diff --git a/.gitignore b/.gitignore index 166c2b253..9b7468c6f 100644 --- a/.gitignore +++ b/.gitignore @@ -25,6 +25,8 @@ pom.xml.releaseBackup pom.xml.versionsBackup pom.xml.next release.properties +# Avoid ignoring Maven wrapper jar file (.jar files are usually ignored) +!maven-wrapper.jar #Gradle stuff .gradle diff --git a/.mvn/wrapper/maven-wrapper.jar b/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/.mvn/wrapper/maven-wrapper.jar differ diff --git a/.mvn/wrapper/maven-wrapper.properties b/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/LICENCE b/LICENCE new file mode 100644 index 000000000..1ce875873 --- /dev/null +++ b/LICENCE @@ -0,0 +1,661 @@ + GNU AFFERO GENERAL PUBLIC LICENSE + Version 3, 19 November 2007 + + Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU Affero General Public License is a free, copyleft license for +software and other kinds of works, specifically designed to ensure +cooperation with the community in the case of network server software. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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If not, see . + +Also add information on how to contact you by electronic and paper mail. + + If your software can interact with users remotely through a computer +network, you should also make sure that it provides a way for users to +get its source. For example, if your program is a web application, its +interface could display a "Source" link that leads users to an archive +of the code. There are many ways you could offer source, and different +solutions will be better for different programs; see section 13 for the +specific requirements. + + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU AGPL, see +. \ No newline at end of file diff --git a/LICENCE.txt b/LICENCE.txt deleted file mode 100644 index d2eae737f..000000000 --- a/LICENCE.txt +++ /dev/null @@ -1,16 +0,0 @@ -The Exomiser - A tool to annotate and prioritize exome variants - -Copyright (C) 2012-2014 Charite Universitätsmedizin Berlin and Genome Research Ltd. - -This program is free software: you can redistribute it and/or modify -it under the terms of the GNU Affero General Public License as -published by the Free Software Foundation, either version 3 of the -License, or (at your option) any later version. - -This program is distributed in the hope that it will be useful, -but WITHOUT ANY WARRANTY; without even the implied warranty of -MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -GNU Affero General Public License for more details. - -You should have received a copy of the GNU Affero General Public License -along with this program. If not, see . diff --git a/README.md b/README.md index 1db7fdba0..63ed6936a 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,10 @@ The Exomiser - A Tool to Annotate and Prioritize Exome Variants =============================================================== +#### Branch build status: +Master: [![CircleCI](https://circleci.com/gh/exomiser/Exomiser/tree/master.svg?style=shield)](https://circleci.com/gh/exomiser/Exomiser/tree/master) +Development: [![CircleCI](https://circleci.com/gh/exomiser/Exomiser/tree/development.svg?style=shield)](https://circleci.com/gh/exomiser/Exomiser/tree/development) -#### Overview +#### Overview: The Exomiser is a Java program that finds potential disease-causing variants from whole-exome or whole-genome sequencing data. @@ -17,8 +20,86 @@ The Exomiser was developed by the Computational Biology and Bioinformatics group The prebuilt Exomiser binaries can be obtained from the [releases](https://github.com/exomiser/Exomiser/releases) page and supporting data files can be downloaded from the [Exomiser FTP site](http://data.monarchinitiative.org/exomiser). -For instructions on installing and running please refer to the [README.md](http://data.monarchinitiative.org/exomiser/README.md) file. +It is possible to use the same data sources for each major version, in order to avoid having to download the data files for each software point release. To do this, edit the ```exomiser.data-directory``` field in the ```application.properties``` file to point to the data directory of the other installation. + +For example you have an exomiser installation located at ```/opt/exomiser-cli-7.0.0``` which contains the data files in the directory ```/opt/exomiser-cli-7.0.0/data```. You can use the release 7.2.3 (same major version) by unzipping the release to ```/opt/exomiser-cli-7.2.3``` and changing the line in the file ```/opt/exomiser-cli-7.2.3/application.properties``` from +```properties +#root path where data is to be downloaded and worked on +#it is assumed that all the files required by exomiser listed in this properties file +#will be found in the data directory unless specifically overridden here. +exomiser.data-directory=data +``` +to +```properties +exomiser.data-directory=/opt/exomiser-cli-7.0.0/data +``` + +For further instructions on installing and running please refer to the [README.md](http://data.monarchinitiative.org/exomiser/README.md) file. #### Running it Please refer to the [manual](http://exomiser.github.io/Exomiser/) for details on how to configure and run the Exomiser. + +#### Using The Exomiser in your code + +The exomiser can also be used as a library in Spring Java applications. Add the ```exomiser-spring-boot-starter``` library to your pom/gradle build script. + +In your configuration class add the ```@EnableExomiser``` annotation + + ```java +@EnableExomiser +public class MainConfig { + +} +``` + +Or if using Spring boot for your application, you can add it on your main class + +```java +@EnableExomiser +@SpringBootApplication +public class Application { + public static void main(String[] args) { + SpringApplication.run(Application.class, args); + } +} +``` + +In your application use the AnalysisBuilder obtained from the Exomiser instance to configure your analysis. Then run the Analysis using the Exomiser class. +Creation of the Exomiser is a complicated process so defer this to Spring and the exomiser-spring-boot-starter. Calling the ```add``` prefixed methods +will add that analysis step to the analysis in the order that they have been defined in your code. + +Example usage: +``` +@Autowired +private final Exomiser exomiser; + +... + + Analysis analysis = exomiser.getAnalysisBuilder() + .vcfPath(vcfPath) + .pedPath(pedPath) + .probandSampleName(probandSampleId) + .hpoIds(phenotypes) + .analysisMode(AnalysisMode.PASS_ONLY) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT) + .frequencySources(FrequencySource.ALL_EXTERNAL_FREQ_SOURCES) + .pathogenicitySources(EnumSet.of(PathogenicitySource.POLYPHEN, PathogenicitySource.MUTATION_TASTER, PathogenicitySource.SIFT)) + .addPhivePrioritiser() + .addPriorityScoreFilter(PriorityType.PHIVE_PRIORITY, 0.501f) + .addQualityFilter(500.0) + .addRegulatoryFeatureFilter() + .addFrequencyFilter(0.01f) + .addPathogenicityFilter(true) + .addInheritanceFilter() + .addOmimPrioritiser() + .build(); + + AnalysisResults analysisResults = exomiser.run(analysis); +``` + +#### Memory usage + +Analysing whole genomes using the ``AnalysisMode.FULL`` or ``AnalysisMode.SPARSE`` will use a lot of RAM (~16GB for 4.5 million variants without any extra variant data being loaded) the standard Java GC will fail to cope well with these. +Using the G1GC should solve this issue. e.g. add ``-XX:+UseG1GC`` to your ``java -jar -Xmx...`` incantation. + \ No newline at end of file diff --git a/circle.yml b/circle.yml new file mode 100644 index 000000000..0494a36f2 --- /dev/null +++ b/circle.yml @@ -0,0 +1,10 @@ +dependencies: + override: + #need to do an install here otherwise the exomiser-core lib won't be found when getting deps for the other modules + - mvn install -DskipTests=true +test: + override: + - mvn test + post: + - mkdir -p $CIRCLE_TEST_REPORTS/junit/ + - find . -type f -regex ".*/target/surefire-reports/.*xml" -exec cp {} $CIRCLE_TEST_REPORTS/junit/ \; \ No newline at end of file diff --git a/exomiser-cli/.mvn/wrapper/maven-wrapper.jar b/exomiser-cli/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-cli/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-cli/.mvn/wrapper/maven-wrapper.properties b/exomiser-cli/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/exomiser-cli/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/exomiser-cli/CHANGELOG.md b/exomiser-cli/CHANGELOG.md index 93b1e7eb6..886a622bb 100644 --- a/exomiser-cli/CHANGELOG.md +++ b/exomiser-cli/CHANGELOG.md @@ -1,6 +1,31 @@ # The Exomiser Command Line Executable - Changelog -## 7.2.2 2016-07-01 +## 8.0.0 2017-08-08 +- See https://github.com/exomiser/Exomiser/projects/2 for a complete list of changes. +- ```application.properties``` file has changed to use ```exomiser``` namespace prefix. Will allow property placeholder substitution - e.g. ```exomiser.property=foo``` can be used elsewhere in the file as ```${exomiser.property}```. Will support user-defined property values too. +- Analysis file now requires ```proband``` id to be specified. Bug-fix for multi-sample VCF files where the proband sample is not the first sample in the genotypes section leading to occasional scores of 0 for the exomiser_gene_variant_score in cases where the variants are heterozygous and consistent with autosomal recessive. +- Analysis file ```scoringMode``` option has now been removed as it was never used. +- Analysis now supports a new ```failedVariantFilter: {}``` to remove variants without a ```PASS``` or ```.``` in the FILTER field. +- Can now filter variants by LOCAL frequency source. +- It is now possible to use UCSC, ENSEMBL or REFSEQ transcript identifiers. +- REMM data is no longer bundled with the distribution. If you want to use this for non-coding variant pathogenicity scoring you'll need to manually download and install it. +- Memory requirements are now reduced. +- Fixed AR comp-het scoring bug. +- Now partly normalises incoming variant data enabling better performance for multi-allelic sites. +- Variants contributing to the exomiser score are now flagged in output files. +- VCF output now has valid headers for info fields and more informative information. +- VCF output no longer contain invalid values in FILTER field for failed variants. +- VCF lines containing multiple alleles now contain the field ```ExContribAltAllele``` with an zero-based integer indicating the ALT allele contributing to the score. +- HTML output now shows individual variant scores and flags contributing variants along with displaying them first. +- HTML output tweaked to display data more clearly in the genes section. + + +## 7.2.3 2016-11-02 +- Partial bug-fix for multi-sample VCF files where the proband sample is not the first sample in the genotypes section leading to occasional scores of 0 for the exomiser_gene_variant_score in cases where the variants are heterozygous and consistent with autosomal recessive. + +*IMPORTANT!* As a workaround for this issue ensure the proband sample is the first sample in the VCF file. This will be properly fixed in the next major release. + +## 7.2.2 2016-07-01 - Fix for issue when using OmimPrioritiser with UNDEFINED inheritance mode which led to gene phenotype scores being halved. - Fix for VCF output multiple allele line duplications. VCF output will now have alternate alleles written out on the same line if they were originally like that in the input VCF. The variant scores will be concatenated to correspond with the alleles. VCFs containing alleles split onto seperate lines in the input file will continue to have them like this in the output file. diff --git a/exomiser-cli/LICENCE.txt b/exomiser-cli/LICENCE.txt new file mode 100644 index 000000000..f6953c1a2 --- /dev/null +++ b/exomiser-cli/LICENCE.txt @@ -0,0 +1,17 @@ +The Exomiser - A tool to annotate and prioritise genomic variants + +Copyright (c) 2016-2017 Queen Mary University of London. +Copyright (c) 2012-2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + +This program is free software: you can redistribute it and/or modify +it under the terms of the GNU Affero General Public License as +published by the Free Software Foundation, either version 3 of the +License, or (at your option) any later version. + +This program is distributed in the hope that it will be useful, +but WITHOUT ANY WARRANTY; without even the implied warranty of +MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +GNU Affero General Public License for more details. + +You should have received a copy of the GNU Affero General Public License +along with this program. If not, see . \ No newline at end of file diff --git a/exomiser-cli/LICENSE.txt b/exomiser-cli/LICENSE.txt deleted file mode 100644 index 33acba8c4..000000000 --- a/exomiser-cli/LICENSE.txt +++ /dev/null @@ -1,16 +0,0 @@ -The Exomiser - A tool to annotate and prioritize exome variants - -Copyright (C) 2012-2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - -This program is free software: you can redistribute it and/or modify -it under the terms of the GNU Affero General Public License as -published by the Free Software Foundation, either version 3 of the -License, or (at your option) any later version. - -This program is distributed in the hope that it will be useful, -but WITHOUT ANY WARRANTY; without even the implied warranty of -MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -GNU Affero General Public License for more details. - -You should have received a copy of the GNU Affero General Public License -along with this program. If not, see . diff --git a/exomiser-cli/README.md b/exomiser-cli/README.md index c70fad9e3..d1b868a3b 100644 --- a/exomiser-cli/README.md +++ b/exomiser-cli/README.md @@ -1,8 +1,11 @@ # The Exomiser - A Tool to Annotate and Prioritize Disease Variants: Command Line Executable -## *New!* Can now perform genome-wide prioritisation including non-coding, regulatory variants (aka. Genomiser). -See [Analysis file](#analysis_file) section on running analysis yml files for more information and the -test-analysis-genome.yml file located in the base install directory. +The Exomiser is a tool to perform genome-wide prioritisation of genomic variants including non-coding and regulatory variants using patient phenotypes as a means of differentiating candidate genes. + +To perform ana analysis, Exomiser requires the patient's genome/exome in VCF format and their phenotype encoded in HPO terms. The exomiser is also capable of analysing trios/small family genomes, so long as a pedigree in PED format is also provided. +See [Usage](#usage) section for info on running an analysis. + +Further information can be found in the [online documentation](http://exomiser.github.io/Exomiser/). ## Software and Hardware requirements - For exome analysis of a 30,000 variant sample 4GB RAM should suffice. @@ -24,18 +27,18 @@ Windows: 4. Extract the data files by right-clicking exomiser-cli-${project.version}-data.zip and selecting 7-Zip > Extract Here 4.1 Allow 7-Zip to overwite any empty data files with the full versions if prompted (remmData for example) 5. cd exomiser-cli-${project.version} - 6. java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --analysis NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml + 6. java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --analysis examples/test-analysis-exome.yml Linux: The following shell script should work- #download the distribution (won't take long) - wget ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${project.version}-distribution.zip + wget https://data.monarchinitiative.org/exomiser/exomiser-cli-${project.version}-distribution.zip #download the data (this is ~20GB and will take a while) - wget ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${project.version}-data.zip + wget https://data.monarchinitiative.org/exomiser/exomiser-cli-${project.version}-data.zip #download the checksums and verify the files (optional) - wget ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/exomiser-cli-${project.version}.sha256 + wget https://data.monarchinitiative.org/exomiser/exomiser-cli-${project.version}.sha256 sha256sum -c exomiser-cli-${project.version}.sha256 #unzip the distribution and data files - this will create a directory called 'exomiser-cli-${project.version}' in the current working directory @@ -44,31 +47,57 @@ The following shell script should work- #run a test genomiser analysis cd exomiser-cli-${project.version} - java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --analysis NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml + java -Xms2g -Xmx2g -jar exomiser-cli-${project.version}.jar --analysis examples/test-analysis-exome.yml + +This script will download, verify and extract the exomiser files and then run the analysis contained in the file 'test-analysis-exome.yml' from the examples sub-directory. This contains a known pathogenic missense variant in the FGFR2 gene. + +## Genomiser data files + +In order to run the Genomiser you will also need to download the REMM data file from [here](https://charite.github.io/software-remm-score.html). Once downloaded you'll need to add the path to the ReMM.v0.3.1.tsv.gz file to the ```application.properties``` file. For example if you downloaded the file to the exomiser data directory you could add the entry like this: -This script will download, verify and extract the exomiser files and then run the analysis contained in the file 'NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml'. -This file is an analysis for an autosomal recessive 5'UTR variant located in POMP gene on chromosome 13. The phenotype HPO terms are taken from the clinical synopsis of + exomiser.remm-path=${exomiser.data-directory}/ReMM.v0.3.1.tsv.gz + +If this step is omitted, the application will throw and error and stop any analysis which defines ```REMM``` in the ```pathogenicitySources``` section of an analysis yml file. + +Having done this, run the analysis like this: + + java -Xms4g -Xmx6g -jar exomiser-cli-${project.version}.jar --analysis examples/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml + +This is an analysis for an autosomal recessive 5'UTR variant located in POMP gene on chromosome 13. The phenotype HPO terms are taken from the clinical synopsis of OMIM #601952 (http://www.omim.org/clinicalSynopsis/601952) ## Alternative set-up -If you want to run Exomiser using an H2 database from a location of your choosing edit the line in application.properties: +If you want to run Exomiser using data from a different release directory edit the line in ```application.properties```: - h2Path= + exomiser.data-directory= with - h2Path=/full/path/to/alternative/h2/database/exomiser.h2.db + exomiser.data-directory=/full/path/to/alternative/data/directory -If you want to run from a Postgres database rather than the default H2 embedded database *Optional* - -1. download exomiser_dump.pg.gz -2. gunzip exomiser_dump.pg.gz -3. load into your postgres server: pg_restore -h yourhost -d yourdatabase -U youruser < exomiser_dump.pg - You can do 2 and 3 at once by using: gunzip -c exomiser_dump.pg.gz | pg_restore -h yourhost -d yourdatabase -U youruser -4. edit application.properties with the details of how to connect this new database +## Usage -## Usage +The Exomiser can be run via simply via command line switches (see cli only) or via a yaml analysis file. We strongly recommended using the yaml option as it provides full control over the application. The cli only options are currently a legacy hangover *only* capable of exome analysis. + +### Analysis file (recommended) + +Analysis files contain all possible options for running an analysis including the ability to specify variant frequency +and pathogenicity data sources and the ability to tweak the order that analysis steps are performed. + +See the test-analysis-exome.yml and test-analysis-genome.yml files located in the base install directory for details. + + java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --analysis examples/test-analysis-exome.yml + +These files an also be used to run full-genomes, however they will require substantially more RAM to do so. For example +a 4.4 million variant analysis requires approximately 12GB RAM. However, RAM requirements can be greatly reduced by +setting the analysisMode option to PASS_ONLY. This will also aid your ability to evaluate the results. + +Analyses can be run in batch mode. Simply put the path to each analysis file in the batch file - one file path per line. + + java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --analysis-batch examples/test-analysis-batch.txt + +### CLI only (limited to exome analysis only) (a) Exomiser hiPHIVE algorithm - phenotype comparisons to human, mouse and fish involving disruption of the gene or nearby genes in the interactome using a RandomWalk @@ -103,37 +132,10 @@ Output options can be combined, for example: --output-format TSV-GENE,VCF (TSV-GENE and VCF) --output-format TSV-GENE, TSV-VARIANT, VCF (TSV-GENE, TSV-VARIANT and VCF) -### Analysis file: - -Analysis files contain all possible options for running an analysis including the ability to specify variant frequency -and pathogenicity data sources and the ability to tweak the order that analysis steps are performed. - - java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --analysis test-analysis-exome.yml - -These files an also be used to run full-genomes, however they will require substantially more RAM to do so. For example -a 4.4 million variant analysis requires approximately 12GB RAM. However, RAM requirements can be substantially reduced by -setting the analysisMode option to PASS_ONLY. - -Analyses can be run in batch mode. Simply put the path to each analysis file in the batch file - one file path per line. - - java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --analysis-batch test-analysis-batch.txt +### Settings file (deprecated) -### Settings file: +This feature is now deprecated and may be subject to removal at a later time. We recommend switching to using an analysis yml file instead. -Settings files contain all the parameters passed in on the command-line so you can just point exomiser to a file. See example.settings and test.settings. - - java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --settings-file test.settings - - -Alternatively you can mix up a settings file and override settings by specifying them on the command line: - - java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --settings-file test.settings --prioritiser=phenix - - -Settings can also be run in batch mode. Simply put the path to each settings file in the batch file - one file path per line. - - java -Xms2g -Xmx4g -jar exomiser-cli-${project.version}.jar --batch-file batch.txt - ### Want help? java -jar exomiser-cli-${project.version}.jar --help diff --git a/exomiser-cli/mvnw b/exomiser-cli/mvnw new file mode 100644 index 000000000..5bf251c07 --- /dev/null +++ b/exomiser-cli/mvnw @@ -0,0 +1,225 @@ +#!/bin/sh +# ---------------------------------------------------------------------------- +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +# ---------------------------------------------------------------------------- + +# ---------------------------------------------------------------------------- +# Maven2 Start Up Batch script +# +# Required ENV vars: +# ------------------ +# JAVA_HOME - location of a JDK home dir +# +# Optional ENV vars +# ----------------- +# M2_HOME - location of maven2's installed home dir +# MAVEN_OPTS - parameters passed to the Java VM when running Maven +# e.g. to debug Maven itself, use +# set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +# MAVEN_SKIP_RC - flag to disable loading of mavenrc files +# ---------------------------------------------------------------------------- + +if [ -z "$MAVEN_SKIP_RC" ] ; then + + if [ -f /etc/mavenrc ] ; then + . /etc/mavenrc + fi + + if [ -f "$HOME/.mavenrc" ] ; then + . "$HOME/.mavenrc" + fi + +fi + +# OS specific support. $var _must_ be set to either true or false. +cygwin=false; +darwin=false; +mingw=false +case "`uname`" in + CYGWIN*) cygwin=true ;; + MINGW*) mingw=true;; + Darwin*) darwin=true + # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home + # See https://developer.apple.com/library/mac/qa/qa1170/_index.html + if [ -z "$JAVA_HOME" ]; then + if [ -x "/usr/libexec/java_home" ]; then + export JAVA_HOME="`/usr/libexec/java_home`" + else + export JAVA_HOME="/Library/Java/Home" + fi + fi + ;; +esac + +if [ -z "$JAVA_HOME" ] ; then + if [ -r /etc/gentoo-release ] ; then + JAVA_HOME=`java-config --jre-home` + fi +fi + +if [ -z "$M2_HOME" ] ; then + ## resolve links - $0 may be a link to maven's home + PRG="$0" + + # need this for relative symlinks + while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG="`dirname "$PRG"`/$link" + fi + done + + saveddir=`pwd` + + M2_HOME=`dirname "$PRG"`/.. + + # make it fully qualified + M2_HOME=`cd "$M2_HOME" && pwd` + + cd "$saveddir" + # echo Using m2 at $M2_HOME +fi + +# For Cygwin, ensure paths are in UNIX format before anything is touched +if $cygwin ; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --unix "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --unix "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --unix "$CLASSPATH"` +fi + +# For Migwn, ensure paths are in UNIX format before anything is touched +if $mingw ; then + [ -n "$M2_HOME" ] && + M2_HOME="`(cd "$M2_HOME"; pwd)`" + [ -n "$JAVA_HOME" ] && + JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`" + # TODO classpath? +fi + +if [ -z "$JAVA_HOME" ]; then + javaExecutable="`which javac`" + if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then + # readlink(1) is not available as standard on Solaris 10. + readLink=`which readlink` + if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then + if $darwin ; then + javaHome="`dirname \"$javaExecutable\"`" + javaExecutable="`cd \"$javaHome\" && pwd -P`/javac" + else + javaExecutable="`readlink -f \"$javaExecutable\"`" + fi + javaHome="`dirname \"$javaExecutable\"`" + javaHome=`expr "$javaHome" : '\(.*\)/bin'` + JAVA_HOME="$javaHome" + export JAVA_HOME + fi + fi +fi + +if [ -z "$JAVACMD" ] ; then + if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + else + JAVACMD="`which java`" + fi +fi + +if [ ! -x "$JAVACMD" ] ; then + echo "Error: JAVA_HOME is not defined correctly." >&2 + echo " We cannot execute $JAVACMD" >&2 + exit 1 +fi + +if [ -z "$JAVA_HOME" ] ; then + echo "Warning: JAVA_HOME environment variable is not set." +fi + +CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher + +# traverses directory structure from process work directory to filesystem root +# first directory with .mvn subdirectory is considered project base directory +find_maven_basedir() { + + if [ -z "$1" ] + then + echo "Path not specified to find_maven_basedir" + return 1 + fi + + basedir="$1" + wdir="$1" + while [ "$wdir" != '/' ] ; do + if [ -d "$wdir"/.mvn ] ; then + basedir=$wdir + break + fi + # workaround for JBEAP-8937 (on Solaris 10/Sparc) + if [ -d "${wdir}" ]; then + wdir=`cd "$wdir/.."; pwd` + fi + # end of workaround + done + echo "${basedir}" +} + +# concatenates all lines of a file +concat_lines() { + if [ -f "$1" ]; then + echo "$(tr -s '\n' ' ' < "$1")" + fi +} + +BASE_DIR=`find_maven_basedir "$(pwd)"` +if [ -z "$BASE_DIR" ]; then + exit 1; +fi + +export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"} +echo $MAVEN_PROJECTBASEDIR +MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS" + +# For Cygwin, switch paths to Windows format before running java +if $cygwin; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --path --windows "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --windows "$CLASSPATH"` + [ -n "$MAVEN_PROJECTBASEDIR" ] && + MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"` +fi + +WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +exec "$JAVACMD" \ + $MAVEN_OPTS \ + -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \ + "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \ + ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@" diff --git a/exomiser-cli/mvnw.cmd b/exomiser-cli/mvnw.cmd new file mode 100644 index 000000000..019bd74d7 --- /dev/null +++ b/exomiser-cli/mvnw.cmd @@ -0,0 +1,143 @@ +@REM ---------------------------------------------------------------------------- +@REM Licensed to the Apache Software Foundation (ASF) under one +@REM or more contributor license agreements. See the NOTICE file +@REM distributed with this work for additional information +@REM regarding copyright ownership. The ASF licenses this file +@REM to you under the Apache License, Version 2.0 (the +@REM "License"); you may not use this file except in compliance +@REM with the License. You may obtain a copy of the License at +@REM +@REM http://www.apache.org/licenses/LICENSE-2.0 +@REM +@REM Unless required by applicable law or agreed to in writing, +@REM software distributed under the License is distributed on an +@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +@REM KIND, either express or implied. See the License for the +@REM specific language governing permissions and limitations +@REM under the License. +@REM ---------------------------------------------------------------------------- + +@REM ---------------------------------------------------------------------------- +@REM Maven2 Start Up Batch script +@REM +@REM Required ENV vars: +@REM JAVA_HOME - location of a JDK home dir +@REM +@REM Optional ENV vars +@REM M2_HOME - location of maven2's installed home dir +@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands +@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a key stroke before ending +@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven +@REM e.g. to debug Maven itself, use +@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files +@REM ---------------------------------------------------------------------------- + +@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on' +@echo off +@REM enable echoing my setting MAVEN_BATCH_ECHO to 'on' +@if "%MAVEN_BATCH_ECHO%" == "on" echo %MAVEN_BATCH_ECHO% + +@REM set %HOME% to equivalent of $HOME +if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%") + +@REM Execute a user defined script before this one +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre +@REM check for pre script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat" +if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd" +:skipRcPre + +@setlocal + +set ERROR_CODE=0 + +@REM To isolate internal variables from possible post scripts, we use another setlocal +@setlocal + +@REM ==== START VALIDATION ==== +if not "%JAVA_HOME%" == "" goto OkJHome + +echo. +echo Error: JAVA_HOME not found in your environment. >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +:OkJHome +if exist "%JAVA_HOME%\bin\java.exe" goto init + +echo. +echo Error: JAVA_HOME is set to an invalid directory. >&2 +echo JAVA_HOME = "%JAVA_HOME%" >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +@REM ==== END VALIDATION ==== + +:init + +@REM Find the project base dir, i.e. the directory that contains the folder ".mvn". +@REM Fallback to current working directory if not found. + +set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR% +IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir + +set EXEC_DIR=%CD% +set WDIR=%EXEC_DIR% +:findBaseDir +IF EXIST "%WDIR%"\.mvn goto baseDirFound +cd .. +IF "%WDIR%"=="%CD%" goto baseDirNotFound +set WDIR=%CD% +goto findBaseDir + +:baseDirFound +set MAVEN_PROJECTBASEDIR=%WDIR% +cd "%EXEC_DIR%" +goto endDetectBaseDir + +:baseDirNotFound +set MAVEN_PROJECTBASEDIR=%EXEC_DIR% +cd "%EXEC_DIR%" + +:endDetectBaseDir + +IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig + +@setlocal EnableExtensions EnableDelayedExpansion +for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a +@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS% + +:endReadAdditionalConfig + +SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe" + +set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar" +set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %* +if ERRORLEVEL 1 goto error +goto end + +:error +set ERROR_CODE=1 + +:end +@endlocal & set ERROR_CODE=%ERROR_CODE% + +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost +@REM check for post script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat" +if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd" +:skipRcPost + +@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on' +if "%MAVEN_BATCH_PAUSE%" == "on" pause + +if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE% + +exit /B %ERROR_CODE% diff --git a/exomiser-cli/pom.xml b/exomiser-cli/pom.xml index 5b8e74b14..2fadab9e8 100644 --- a/exomiser-cli/pom.xml +++ b/exomiser-cli/pom.xml @@ -1,17 +1,18 @@ commons-cli commons-cli - - org.springframework.boot - spring-boot - @@ -63,6 +64,7 @@ log4j2.xml distribution/* + data/* @@ -80,7 +82,7 @@ false - de.charite.compbio.exomiser.cli.Main + org.monarchinitiative.exomiser.cli.Main @@ -129,7 +131,15 @@ - src/main/resources/distribution + src/main/resources/data + + *.ser + *.tsv.gz + *.tsv.gz.tbi + + + + src/main/resources/examples true *.settings @@ -139,18 +149,15 @@ - src/main/resources/distribution/data + src/main/resources/vcf - *.tsv.gz - *.tsv.gz.tbi + Pfeiffer.vcf + Pfeiffer-quartet.vcf.gz + Pfeiffer-quartet.ped + *.vcf + *.vcf.gz - - src/test/resources - Pfeiffer.vcf - Pfeiffer-quartet.vcf.gz - Pfeiffer-quartet.ped - diff --git a/exomiser-cli/src/assemble/distribution.xml b/exomiser-cli/src/assemble/distribution.xml index cbc5c7e7d..6378ef32e 100644 --- a/exomiser-cli/src/assemble/distribution.xml +++ b/exomiser-cli/src/assemble/distribution.xml @@ -1,20 +1,21 @@ distribution - - zip @@ -34,8 +33,8 @@ *.jar README* - LICENSE* - NOTICE* + LICENCE* + CHANGELOG* @@ -49,10 +48,6 @@ ${project.build.directory}/distribution-resources / - *.settings - *.yml - test-analysis-batch.txt - test-batchFiles.txt application.properties ehcache.xml @@ -61,16 +56,26 @@ ${project.build.directory}/distribution-resources /data - Pfeiffer.vcf - Pfeiffer-quartet.vcf - Pfeiffer-quartet.ped - ucsc_hg19.ser + hg19_ucsc.ser + hg19_refseq.ser + hg19_ensembl.ser rw_string_9_05.gz rw_string_9_05_id2index.gz exomiser.h2.db phenix/* - *.tsv.gz - *.tsv.gz.tbi + + + + ${project.build.directory}/distribution-resources + /examples + + *.yml + test-analysis-batch.txt + Pfeiffer.vcf + Pfeiffer-quartet.vcf.gz + Pfeiffer-quartet.ped + NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.vcf + NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.vcf.gz diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/BatchFileReader.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/BatchFileReader.java deleted file mode 100644 index 4e25f814f..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/BatchFileReader.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ -package de.charite.compbio.exomiser.cli; - -import java.io.IOException; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.List; -import java.util.function.Predicate; -import java.util.stream.Stream; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import static java.util.stream.Collectors.toList; - -/** - * Reads in Exomiser batch files and returns a list of Paths to the - * settings/analysis files. The reader expects a single path per line. - * - * @author Jules Jacobsen - */ -public class BatchFileReader { - - private static final Logger logger = LoggerFactory.getLogger(BatchFileReader.class); - - public List readPathsFromBatchFile(Path batchFile) { - logger.info("Processing batch file {}", batchFile); - try (Stream lines = Files.lines(batchFile, Charset.defaultCharset())) { - return lines.filter(commentLines()).filter(emptyLines()).map(line -> Paths.get(line.trim())).collect(toList()); - } catch (IOException ex) { - logger.error("Unable to read batch file {}", batchFile, ex); - } - return new ArrayList<>(); - } - - private Predicate commentLines() { - return line -> !line.startsWith("#"); - } - - private Predicate emptyLines() { - return line -> !line.isEmpty(); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/CommandLineOptionsParser.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/CommandLineOptionsParser.java deleted file mode 100644 index e5b6f3c4d..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/CommandLineOptionsParser.java +++ /dev/null @@ -1,97 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli; - -import de.charite.compbio.exomiser.cli.options.OptionMarshaller; -import static de.charite.compbio.exomiser.cli.options.SettingsFileOptionMarshaller.SETTINGS_FILE_OPTION; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import java.io.IOException; -import java.io.Reader; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.Map; -import java.util.Properties; -import javax.annotation.Resource; -import org.apache.commons.cli.CommandLine; -import org.apache.commons.cli.Option; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.stereotype.Component; - -/** - * Handles parsing of the commandline input to provide properly typed data to - * the rest of the application in the form of an ExomiserSettings object. - * - * @author Jules Jacobsen - */ -@Component -public class CommandLineOptionsParser { - - private static final Logger logger = LoggerFactory.getLogger(CommandLineOptionsParser.class); - - @Resource - private Map optionMarshallers; - - public SettingsBuilder parseCommandLine(CommandLine commandLine) { - - logger.info("Parsing {} command line options:", commandLine.getOptions().length); - - SettingsBuilder settingsBuilder = new SettingsBuilder(); - - if (commandLine.hasOption(SETTINGS_FILE_OPTION)) { - Path settingsFile = Paths.get(commandLine.getOptionValue(SETTINGS_FILE_OPTION)); - settingsBuilder = parseSettingsFile(settingsFile); - logger.warn("Settings file parameters will be overridden by command-line parameters!"); - } - for (Option option : commandLine.getOptions()) { - logger.info("--{} : {}", option.getLongOpt(), option.getValues()); - String key = option.getLongOpt(); - String[] values = option.getValues(); - setBuilderValue(key, values, settingsBuilder); - } - - //return a Map - return settingsBuilder; - - } - - /** - * Parses the settings file and sets the values from this into a settings - * object. - * - * @param settingsFile - * @return - */ - public SettingsBuilder parseSettingsFile(Path settingsFile) { - - SettingsBuilder settingsBuilder = new SettingsBuilder(); - - try (Reader reader = Files.newBufferedReader(settingsFile, Charset.defaultCharset())) { - Properties settingsProperties = new Properties(); - - settingsProperties.load(reader); - logger.info("Loaded settings from properties file: {}", settingsProperties); - for (String key : settingsProperties.stringPropertyNames()) { - String[] values = settingsProperties.getProperty(key).split(","); - setBuilderValue(key, values, settingsBuilder); - } - - } catch (IOException ex) { - logger.error("Unable to parse settings from file {}", settingsFile, ex); - } - return settingsBuilder; - } - - private void setBuilderValue(String key, String[] values, SettingsBuilder settingsBuilder) { - - if (optionMarshallers.containsKey(key)) { - OptionMarshaller optionMarshaller = optionMarshallers.get(key); - optionMarshaller.applyValuesToSettingsBuilder(values, settingsBuilder); - } - } -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/CommandLineParseError.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/CommandLineParseError.java deleted file mode 100644 index 6bd4108f2..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/CommandLineParseError.java +++ /dev/null @@ -1,18 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli; - -/** - * - * @author Jules Jacobsen - */ -public class CommandLineParseError extends RuntimeException { - - public CommandLineParseError(String message) { - super(message); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/Main.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/Main.java deleted file mode 100644 index d0772e716..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/Main.java +++ /dev/null @@ -1,231 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ -package de.charite.compbio.exomiser.cli; - -import de.charite.compbio.exomiser.cli.config.MainConfig; -import de.charite.compbio.exomiser.core.Exomiser; -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.AnalysisParser; -import de.charite.compbio.exomiser.core.analysis.SettingsParser; -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import de.charite.compbio.exomiser.core.writers.OutputSettings; -import de.charite.compbio.exomiser.core.writers.ResultsWriter; -import de.charite.compbio.exomiser.core.writers.ResultsWriterFactory; - -import java.io.IOException; -import java.net.URISyntaxException; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.security.CodeSource; -import java.util.*; - -import org.apache.commons.cli.CommandLine; -import org.apache.commons.cli.GnuParser; -import org.apache.commons.cli.HelpFormatter; -import org.apache.commons.cli.Options; -import org.apache.commons.cli.ParseException; -import org.apache.commons.cli.Parser; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.context.annotation.AnnotationConfigApplicationContext; - -/** - * Main class for calling off the command line in the Exomiser package. - * - * @author Jules Jacobsen - */ -public class Main { - - private static final Logger logger = LoggerFactory.getLogger(Main.class); - - private static final String DEFAULT_OUTPUT_DIR = "results"; - - private AnnotationConfigApplicationContext applicationContext; - - private Options options; - - private SettingsParser settingsParser; - private ResultsWriterFactory resultsWriterFactory; - private AnalysisParser analysisParser; - private Exomiser exomiser; - private String buildVersion; - - public static void main(String[] args) { - Main main = new Main(); - main.run(args); - } - - private void run(String[] args) { - setup(); - showSplash(); - //TODO: this should return a list of Analysis- either convert the settings/cli input to an Analysis or add one directly from an analysis yaml file - //then move ExomiserSettings into this package from core. - runAnalyses(args); - logger.info("Exomising finished - Bye!"); - } - - private void setup() { - Locale.setDefault(Locale.UK); - logger.info("Locale set to {}", Locale.getDefault()); - Path jarFilePath = getJarFilePath(); - applicationContext = setUpApplicationContext(jarFilePath); - createDefaultOutputDirIfNotExists(jarFilePath); - - options = applicationContext.getBean(Options.class); - - settingsParser = applicationContext.getBean(SettingsParser.class); - resultsWriterFactory = applicationContext.getBean(ResultsWriterFactory.class); - analysisParser = applicationContext.getBean(AnalysisParser.class); - exomiser = applicationContext.getBean(Exomiser.class); - - buildVersion = (String) applicationContext.getBean("buildVersion"); - } - - private Path getJarFilePath() { - //Get Spring started - this contains the configuration of the application - CodeSource codeSource = Main.class.getProtectionDomain().getCodeSource(); - try { - return Paths.get(codeSource.getLocation().toURI()).getParent(); - } catch (URISyntaxException ex) { - logger.error("Unable to find jar file", ex); - throw new RuntimeException("Unable to find jar file", ex); - } - } - - private AnnotationConfigApplicationContext setUpApplicationContext(Path jarFilePath) { - //this is set here so that Spring can load - System.setProperty("jarFilePath", jarFilePath.toString()); - applicationContext = new AnnotationConfigApplicationContext(MainConfig.class); - return applicationContext; - } - - private void createDefaultOutputDirIfNotExists(Path jarFilePath) { - Path defaultOutputDir = jarFilePath.resolve(DEFAULT_OUTPUT_DIR); - try { - if (!Files.exists(defaultOutputDir)) { - Files.createDirectory(defaultOutputDir); - } - } catch (IOException ex) { - logger.error("Unable to create default output directory for results {}", defaultOutputDir, ex); - } - } - - private void showSplash() { - String splash - = "\n\n" - + " Welcome to: \n" - + " _____ _ _____ _ \n" - + " |_ _| |__ ___ | ____|_ _____ _ __ ___ (_)___ ___ _ __ \n" - + " | | | '_ \\ / _ \\ | _| \\ \\/ / _ \\| '_ ` _ \\| / __|/ _ \\ '__|\n" - + " | | | | | | __/ | |___ > < (_) | | | | | | \\__ \\ __/ | \n" - + " |_| |_| |_|\\___| |_____/_/\\_\\___/|_| |_| |_|_|___/\\___|_| \n" - + " \n" - + " A Tool to Annotate and Prioritize Exome Variants v" + buildVersion + "\n"; - - System.out.println(splash); - } - - private void runAnalyses(String[] args) { - CommandLineOptionsParser commandLineOptionsParser = applicationContext.getBean(CommandLineOptionsParser.class); - - CommandLine commandLine = parseCommandLineOptions(args); - if (commandLine.hasOption("analysis")) { - Path analysisScript = Paths.get(commandLine.getOptionValue("analysis")); - runAnalysisFromScript(analysisScript); - } else if (commandLine.hasOption("analysis-batch")) { - Path analysisBatchFile = Paths.get(commandLine.getOptionValue("analysis-batch")); - List analysisScripts = new BatchFileReader().readPathsFromBatchFile(analysisBatchFile); - logger.info("Running {} analyses from analysis batch file.", analysisScripts.size()); - //this *can* be run in parallel using parallelStream() at the expense of RAM in order to hold all the variants in memory. - //like this: - //analysisScripts.parallelStream().forEach(this::runAnalysisFromScript); - //HOWEVER there may be threading issues so this needs investigation. - analysisScripts.forEach(analysis ->{logger.info("Running analysis: {}", analysis); runAnalysisFromScript(analysis);}); - } - //check the args for a batch file first as this option is otherwise ignored - else if (commandLine.hasOption("batch-file")) { - Path batchFilePath = Paths.get(commandLine.getOptionValue("batch-file")); - List settingsFiles = new BatchFileReader().readPathsFromBatchFile(batchFilePath); - logger.info("Running {} analyses from settings batch file.", settingsFiles.size()); - for (Path settingsFile : settingsFiles) { - logger.info("Running settings: {}", settingsFile); - SettingsBuilder settingsBuilder = commandLineOptionsParser.parseSettingsFile(settingsFile); - runAnalysisFromSettings(settingsBuilder); - } - } else { - //make a single SettingsBuilder - SettingsBuilder settingsBuilder = commandLineOptionsParser.parseCommandLine(commandLine); - runAnalysisFromSettings(settingsBuilder); - } - } - - private CommandLine parseCommandLineOptions(String[] args) { - Parser parser = new GnuParser(); - try { - CommandLine commandLine = parser.parse(options, args); - if (args.length == 0 || commandLine.hasOption("help")) { - printHelp(); - System.exit(0); - } - return commandLine; - } catch (ParseException ex) { - printHelp(); - logger.error("Unable to parse command line arguments. Please check you have typed the parameters correctly.", ex); - System.exit(0); - } - return null; - } - - private void printHelp() { - HelpFormatter formatter = new HelpFormatter(); - String launchCommand = String.format("java -jar exomizer-cli-%s.jar [...]", buildVersion); - formatter.printHelp(launchCommand, options); - } - - private void runAnalysisFromScript(Path analysisScript) { - Analysis analysis = analysisParser.parseAnalysis(analysisScript); - OutputSettings outputSettings = analysisParser.parseOutputSettings(analysisScript); - runAnalysisAndWriteResults(analysis, outputSettings); - } - - private void runAnalysisFromSettings(SettingsBuilder settingsBuilder) { - Settings settings = settingsBuilder.build(); - if (settings.isValid()) { - Analysis analysis = settingsParser.parse(settings); - runAnalysisAndWriteResults(analysis, settings); - } - } - - private void runAnalysisAndWriteResults(Analysis analysis, OutputSettings outputSettings) { - exomiser.run(analysis); - writeResults(analysis, outputSettings); - } - - private void writeResults(Analysis analysis, OutputSettings outputSettings) { - logger.info("Writing results"); - for (OutputFormat outFormat : outputSettings.getOutputFormats()) { - ResultsWriter resultsWriter = resultsWriterFactory.getResultsWriter(outFormat); - resultsWriter.writeFile(analysis, outputSettings); - } - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/CacheConfig.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/CacheConfig.java deleted file mode 100644 index d440877a7..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/CacheConfig.java +++ /dev/null @@ -1,93 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.config; - -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.cache.CacheManager; -import org.springframework.cache.annotation.EnableCaching; -import org.springframework.cache.concurrent.ConcurrentMapCacheManager; -import org.springframework.cache.ehcache.EhCacheCacheManager; -import org.springframework.cache.ehcache.EhCacheManagerFactoryBean; -import org.springframework.cache.support.NoOpCacheManager; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.Lazy; -import org.springframework.core.env.Environment; -import org.springframework.core.io.PathResource; -import org.springframework.core.io.Resource; - -/** - * - * @author Jules Jacobsen - */ -@EnableCaching -@Configuration -public class CacheConfig { - - private static final Logger logger = LoggerFactory.getLogger(CacheConfig.class); - - @Autowired - private Environment env; - - @Autowired - Path jarFilePath; - - @Bean - public CacheManager cacheManager() { - String cacheOption = env.getProperty("cache"); - //see http://docs.spring.io/spring/docs/current/spring-framework-reference/html/cache.html for how this works - CacheManager cacheManager; - List cacheNames = new ArrayList<>(); - switch (cacheOption) { - case "none": - cacheManager = noOpCacheManager(); - break; - case "mem": - cacheManager = new ConcurrentMapCacheManager("pathogenicity", "frequency", "diseaseHp", "diseases","hpo", "mpo", "zpo"); - cacheNames.addAll(cacheManager.getCacheNames()); - break; - case "ehcache": - cacheManager = ehCacheCacheManager(); - cacheNames.addAll(Arrays.asList(ehCacheCacheManager().getCacheManager().getCacheNames())); - break; - default: - cacheManager = noOpCacheManager(); - } - logger.info("Set up {} caches: {}", cacheOption, cacheNames); - return cacheManager; - } - - public NoOpCacheManager noOpCacheManager() { - logger.info("Caching disabled."); - return new NoOpCacheManager(); - } - - - public EhCacheCacheManager ehCacheCacheManager() { - EhCacheCacheManager ehCacheCacheManager = new EhCacheCacheManager(ehCacheManager().getObject()); - return ehCacheCacheManager; - } - - @Lazy - @Bean//(destroyMethod = "shutdown") - public EhCacheManagerFactoryBean ehCacheManager() { - Path ehCacheConfigFile = jarFilePath.resolve("ehcache.xml"); - Resource ehCachConfig = new PathResource(ehCacheConfigFile); - logger.info("Loading ehcache.xml from {}", ehCachConfig.getDescription()); - - EhCacheManagerFactoryBean ehCacheManagerFactoryBean = new EhCacheManagerFactoryBean(); - ehCacheManagerFactoryBean.setConfigLocation(ehCachConfig); - return ehCacheManagerFactoryBean; - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/CommandLineOptionsConfig.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/CommandLineOptionsConfig.java deleted file mode 100644 index cc6ec4ea8..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/CommandLineOptionsConfig.java +++ /dev/null @@ -1,158 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.config; - -import de.charite.compbio.exomiser.cli.CommandLineOptionsParser; -import de.charite.compbio.exomiser.cli.options.*; -import org.apache.commons.cli.Option; -import org.apache.commons.cli.Options; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; - -import java.util.HashMap; -import java.util.LinkedHashSet; -import java.util.Map; -import java.util.Set; -import org.apache.commons.cli.OptionBuilder; - -/** - * Spring configuration for setting-up the command-line options. If you want a - * new option on the command line, add it here. - * - * @author Jules Jacobsen - */ -@Configuration -public class CommandLineOptionsConfig { - - private static final Logger logger = LoggerFactory.getLogger(CommandLineOptionsConfig.class); - - @Bean - public CommandLineOptionsParser commandLineParser() { - return new CommandLineOptionsParser(); - } - - /** - * Add the options you want to be made available to the application here. - * - * @return the required OptionMarshallers for the system. - */ - private Set desiredOptionMarshallers() { - Set desiredOptionMarshallers = new LinkedHashSet<>(); - - //commandline parser options - desiredOptionMarshallers.add(new SettingsFileOptionMarshaller()); - desiredOptionMarshallers.add(new BatchFileOptionMarshaller()); - - //sample data files - desiredOptionMarshallers.add(new VcfFileOptionMarshaller()); - desiredOptionMarshallers.add(new PedFileOptionMarshaller()); - - //analysis options - desiredOptionMarshallers.add(new HpoIdsOptionMarshaller()); - desiredOptionMarshallers.add(new InheritanceModeOptionMarshaller()); - desiredOptionMarshallers.add(new FullAnalysisOptionMarshaller()); - - //filter options - desiredOptionMarshallers.add(new FrequencyThresholdOptionMarshaller()); - desiredOptionMarshallers.add(new FrequencyKnownVariantOptionMarshaller()); - desiredOptionMarshallers.add(new GeneticIntervalOptionMarshaller()); - desiredOptionMarshallers.add(new QualityThresholdOptionMarshaller()); - desiredOptionMarshallers.add(new PathogenicityFilterCutOffOptionMarshaller()); - desiredOptionMarshallers.add(new TargetFilterOptionMarshaller()); - desiredOptionMarshallers.add(new GenesToKeepFilterOptionMarshaller()); - - //prioritiser options - desiredOptionMarshallers.add(new PrioritiserOptionMarshaller()); - desiredOptionMarshallers.add(new SeedGenesOptionMarshaller()); - desiredOptionMarshallers.add(new DiseaseIdOptionMarshaller()); - desiredOptionMarshallers.add(new CandidateGeneOptionMarshaller()); - desiredOptionMarshallers.add(new HiPhiveOptionMarshaller()); - - //output options - desiredOptionMarshallers.add(new OutputPassOnlyVariantsOptionMarshaller()); - desiredOptionMarshallers.add(new NumGenesOptionMarshaller()); - desiredOptionMarshallers.add(new OutFilePrefixOptionMarshaller()); - desiredOptionMarshallers.add(new OutFileFormatOptionMarshaller()); - - return desiredOptionMarshallers; - } - - @Bean - public Map optionMarshallers() { - Map optionMarshallers = new HashMap<>(); - - for (OptionMarshaller optionMarshaller : desiredOptionMarshallers()) { - String cliParameter = optionMarshaller.getCommandLineParameter(); - logger.debug("Adding {}", optionMarshaller); - optionMarshallers.put(cliParameter, optionMarshaller); - } - return optionMarshallers; - } - - @Bean - public Options options() { - Options options = new Options(); - - options.addOption(new Option("h", "help", false, "Shows this help")); - options.addOption(new Option("H", "help", false, "Shows this help")); - options.addOption(OptionBuilder - .withArgName("file") - .hasArg() - .withDescription("Path to analysis script file. This should be in yaml format.") - .withLongOpt("analysis") - .create()); - options.addOption(OptionBuilder - .withArgName("file") - .hasArg() - .withDescription("Path to analysis batch file. This should be in plain text file with the path to a single analys script file in yaml format on each line.") - .withLongOpt("analysis-batch") - .create()); - - for (OptionMarshaller optionMarshaller : desiredOptionMarshallers()) { - Option option = optionMarshaller.getOption(); - options.addOption(option); - } - - return options; - } - - //the original options: -// options.addOption(new Option("h", "HELP_OPTION", false, "Shows this HELP_OPTION")); -// options.addOption(new Option("H", "HELP_OPTION", false, "Shows this HELP_OPTION")); -// options.addOption(new Option("variant", "VCF_OPTION", true, "Path to VCF_OPTION file with mutations to be analyzed.")); -// options.addOption(new Option("o", "outfile", true, "name of out file (default: \"exomizer.html\")")); -// options.addOption(new Option("l", "log", true, "Configuration file for logger")); -// // / Filtering options -// options.addOption(new Option("A", "omim_disease", true, "OMIM ID for disease being sequenced")); -// options.addOption(new Option("B", "boqa", true, "comma-separated list of HPO terms for BOQA")); -// options.addOption(new Option("D", "file_for_deserialising", true, "De-serialise")); -// options.addOption(new Option("F", "freq_threshold", true, "Frequency threshold for variants")); -// options.addOption(new Option("I", "inheritance", true, "Filter variants for inheritance pattern (AR,AD,X)")); -// options.addOption(new Option("M", "mgi_phenotypes", false, "Filter variants for MGI phenodigm score")); -// -// options.addOption(new Option("P", "path", false, "Filter variants for predicted pathogenicity")); -// options.addOption(new Option("Q", "qual_threshold", true, "Quality threshold for variants")); -// options.addOption(new Option("S", "SeedGenes", true, "Comma separated list of seed genes for random walk")); -// options.addOption(new Option("W", "RWmatrix", true, "Random walk matrix file")); -// options.addOption(new Option("X", "RWindex", true, "Random walk index file")); -// options.addOption(new Option("Z", "zfin_phenotypes", false, "Filter variants for ZFIN phenodigm score")); -// -// // Annotations that do not filter -// options.addOption(new Option(null, "interval", true, "Restrict to interval (e.g., chr2:12345-67890)")); -// options.addOption(new Option(null, "tsv", false, "Output tab-separated value (TSV) file instead of HTML")); -// options.addOption(new Option(null, "vcf_output", false, "Output VCF_OPTION file instead of HTML")); -// options.addOption(new Option(null, "CANDIDATE_GENE_OPTION", true, "Known or suspected gene association")); -// options.addOption(new Option(null, "dbsnp", false, "Filter out all variants with an entry in dbSNP/ESP (regardless of frequency)")); -// options.addOption(new Option(null, "PED_OPTION", true, "pedigree (PED_OPTION) file")); -// options.addOption(new Option(null, "hpo", true, "HPO Ontology (obo) file")); -// options.addOption(new Option(null, "hpoannot", true, "HPO Annotations file")); -// options.addOption(new Option(null, "HPO_IDS_OPTION", true, "HPO IDs for the sample being sequenced")); -// options.addOption(new Option(null, "ngenes", true, "Number of genes to show in output")); -// options.addOption(new Option(null, "withinFirewall", false, "Set flag that we are running on private server")); -// options.addOption(new Option(null, "phenomizerData", true, "Phenomizer data directory")); -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/DataSourceConfig.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/DataSourceConfig.java deleted file mode 100644 index c99787b9a..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/DataSourceConfig.java +++ /dev/null @@ -1,129 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.config; - -import com.zaxxer.hikari.HikariConfig; -import com.zaxxer.hikari.HikariDataSource; -import java.nio.file.Path; -import java.sql.Connection; -import java.sql.SQLException; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.PropertySource; -import org.springframework.core.env.Environment; - -/** - * Provides the JDBC datasource from the jdbc.properties file located in the - * classpath. - * - * @author Jules Jacobsen - */ -@Configuration -@PropertySource({"jdbc.properties"}) -public class DataSourceConfig { - - private static final Logger logger = LoggerFactory.getLogger(DataSourceConfig.class); - - @Autowired - private Environment env; - - @Autowired - private Path dataPath; - - @Bean - public DataSource dataSource() { - HikariDataSource dataSource; - if (env.getProperty("usePostgreSQL").equals("true")) { - dataSource = new HikariDataSource(postgreSQLConfig()); - } - else { - dataSource = new HikariDataSource(h2Config()); - } - dataSource.setMaximumPoolSize(maxConnections()); - - logger.info("DataSource using maximum of {} database connections", dataSource.getMaximumPoolSize()); - logger.info("Returning a new {} DataSource pool to URL {} user: {}", dataSource.getPoolName(), dataSource.getJdbcUrl(), dataSource.getUsername()); - return dataSource; - } - - private int maxConnections() { - int maxConnections = 10; - String userSpecifiedMaxConn = env.getProperty("maxConnections"); - try { - maxConnections = Integer.parseInt(userSpecifiedMaxConn); - } catch (NumberFormatException ex) { - logger.error("{} is not a valid integer value. Returning default value of {}", userSpecifiedMaxConn, maxConnections, ex); - } - return maxConnections; - } - - private HikariConfig postgreSQLConfig() { - - //resolve the placeholders in the jdbc.properties using the user-supplied data from application.properties - env.resolvePlaceholders("dbuser"); - env.resolvePlaceholders("password"); - env.resolvePlaceholders("server"); - env.resolvePlaceholders("port"); - env.resolvePlaceholders("database"); - - //read in the properties from jdbc.properties - String user = env.getProperty("pg.username"); - String password = env.getProperty("pg.password"); - String server = env.getProperty("pg.server"); - String port = env.getProperty("pg.port"); - String db = env.getProperty("pg.database"); - - String url = String.format("jdbc:pgsql://%s:%s/%s", server, port, db); - - HikariConfig config = new HikariConfig(); - config.setJdbcUrl(url); - config.setUsername(user); - config.setPassword(password); - config.setPoolName("exomiser-PostgreSQL"); - - return config; - } - - private HikariConfig h2Config() { - - String user = env.getProperty("h2.username"); - String password = env.getProperty("h2.password"); - String url = env.getProperty("h2.url"); - - if (env.containsProperty("h2Path") & !env.getProperty("h2Path").isEmpty()) { - env.resolvePlaceholders("h2Path"); //this comes from the application.properties - }else { - //in this case it hasn't been manually set, so we'll use the default location - //the placeholders are not visible in the url string hence we replace the 'file:' - String h2Filepath = String.format("file:%s", dataPath); - url = env.getProperty("h2.url").replace("file:", h2Filepath); - } - - HikariConfig config = new HikariConfig(); - config.setJdbcUrl(url); - config.setUsername(user); - config.setPassword(password); - config.setPoolName("exomiser-H2"); - - return config; - } - - @Bean - public Connection connection() { - Connection connection = null; - try { - connection = dataSource().getConnection(); - } catch (SQLException ex) { - logger.error(null, ex); - } - return connection; - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/MainConfig.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/MainConfig.java deleted file mode 100644 index d73a85468..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/config/MainConfig.java +++ /dev/null @@ -1,373 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.cli.config; - -import de.charite.compbio.exomiser.cli.Main; -import de.charite.compbio.exomiser.core.Exomiser; -import de.charite.compbio.exomiser.core.analysis.AnalysisFactory; -import de.charite.compbio.exomiser.core.analysis.AnalysisParser; -import de.charite.compbio.exomiser.core.analysis.SettingsParser; -import de.charite.compbio.exomiser.core.dao.*; -import de.charite.compbio.exomiser.core.factories.SampleDataFactory; -import de.charite.compbio.exomiser.core.factories.VariantDataServiceImpl; -import de.charite.compbio.exomiser.core.dao.DefaultDiseaseDao; -import de.charite.compbio.exomiser.core.dao.DiseaseDao; -import de.charite.compbio.exomiser.core.dao.HumanPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.MousePhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.ZebraFishPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.factories.VariantFactory; -import de.charite.compbio.exomiser.core.prioritisers.PriorityFactoryImpl; -import de.charite.compbio.exomiser.core.prioritisers.util.DataMatrix; -import de.charite.compbio.exomiser.core.prioritisers.util.ModelService; -import de.charite.compbio.exomiser.core.prioritisers.util.ModelServiceImpl; -import de.charite.compbio.exomiser.core.prioritisers.util.OntologyService; -import de.charite.compbio.exomiser.core.prioritisers.util.OntologyServiceImpl; -import de.charite.compbio.exomiser.core.prioritisers.util.PriorityService; -import de.charite.compbio.jannovar.data.JannovarDataSerializer; -import de.charite.compbio.jannovar.data.SerializationException; - -import de.charite.compbio.exomiser.core.writers.ResultsWriterFactory; -import de.charite.compbio.jannovar.data.JannovarData; -import htsjdk.tribble.readers.TabixReader; -import java.io.IOException; - -import java.net.URISyntaxException; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.security.CodeSource; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.*; -import org.springframework.core.env.Environment; -import org.thymeleaf.TemplateEngine; -import org.thymeleaf.templateresolver.ClassLoaderTemplateResolver; -import org.thymeleaf.templateresolver.TemplateResolver; - - -/** - * Provides configuration details from the settings.properties file located in - * the classpath. - * - * @author Jules Jacobsen - */ -@Configuration -//TODO: add this and check it works - then remove all the unecessary gubbins below -//@ComponentScan("de.charite.compbio.exomiser") -@Import({DataSourceConfig.class, CommandLineOptionsConfig.class, CacheConfig.class}) -@PropertySource({"buildversion.properties", "file:${jarFilePath}/application.properties"}) -public class MainConfig { - - private static final Logger logger = LoggerFactory.getLogger(MainConfig.class); - - @Autowired - private Environment env; - - /** - * Used to find the Path the Main application is running on in order to - * pick-up the user-configured properties files. - * - * @return - */ - @Bean - public Path jarFilePath() { - CodeSource codeSource = Main.class.getProtectionDomain().getCodeSource(); - - Path jarFilePath = null; - try { - jarFilePath = Paths.get(codeSource.getLocation().toURI()).getParent(); - } catch (URISyntaxException ex) { - logger.error("Unable to find jar file", ex); - } - logger.info("Jar file is running from location: {}", jarFilePath); - return jarFilePath; - } - - @Bean - public String buildVersion() { - return env.getProperty("buildVersion"); - } - - @Bean - public String buildTimestamp() { - return env.getProperty("buildTimestamp"); - } - - /** - * This is critical for the application to run as it points to the data - * directory where all the required resources are found. Without this being - * correctly set, the application will fail. - * - * @return - */ - @Bean - public Path dataPath() { - String dataDirValue = getValueOfProperty("dataDir"); - Path dataPath = jarFilePath().resolve(dataDirValue); - logger.debug("Root data source directory set to: {}", dataPath.toAbsolutePath()); - - return dataPath; - } - - @Bean - public Path ucscFilePath() { - String ucscFileNameValue = getValueOfProperty("ucscFileName"); - Path ucscFilePath = dataPath().resolve(ucscFileNameValue); - logger.debug("UCSC data file: {}", ucscFilePath.toAbsolutePath()); - return ucscFilePath; - } - - @Bean - public Path phenixDataDirectory() { - String phenixDataDirValue = getValueOfProperty("phenomizerDataDir"); - Path phenixDataDirectory = dataPath().resolve(phenixDataDirValue); - logger.debug("phenixDataDirectory: {}", phenixDataDirectory.toAbsolutePath()); - return phenixDataDirectory; - } - - @Bean - public Path hpoOntologyFilePath() { - String hpoOntologyFileValue = getValueOfProperty("hpoOntologyFile"); - Path hpoOntologyFilePath = phenixDataDirectory().resolve(hpoOntologyFileValue); - logger.debug("hpoOntologyFilePath: {}", hpoOntologyFilePath.toAbsolutePath()); - return hpoOntologyFilePath; - } - - @Bean - public Path hpoAnnotationFilePath() { - String hpoAnnotationFileValue = getValueOfProperty("hpoAnnotationFile"); - Path hpoAnnotationFilePath = phenixDataDirectory().resolve(hpoAnnotationFileValue); - logger.debug("hpoAnnotationFilePath: {}", hpoAnnotationFilePath.toAbsolutePath()); - return hpoAnnotationFilePath; - } - - @Lazy - @Bean - public TabixReader indelTabixReader() { - String caddInDelPathValue = getValueOfProperty("caddInDelPath"); - if (caddInDelPathValue.isEmpty()) { - caddInDelPathValue = dataPath().resolve("InDels.tsv.gz").toString(); - } - try { - return new TabixReader(caddInDelPathValue); - } catch (IOException e) { - throw new RuntimeException("CADD InDels.tsv.gz file not found.", e); - } - } - - @Lazy - @Bean - public TabixReader snvTabixReader() { - String caddSnvPathValue = getValueOfProperty("caddSnvPath"); - if (caddSnvPathValue.isEmpty()) { - caddSnvPathValue = dataPath().resolve("whole_genome_SNVs.tsv.gz").toString(); - } - try { - return new TabixReader(caddSnvPathValue); - } catch (IOException e) { - throw new RuntimeException("CADD whole_genome_SNVs.tsv.gz file not found.", e); - } - } - - @Lazy - @Bean - public TabixReader remmTabixReader() { - String remmPath = getValueOfProperty("remmPath"); - String remmPathValue = dataPath().resolve(remmPath).toString(); - try { - return new TabixReader(remmPathValue); - } catch (IOException e) { - throw new RuntimeException("REMM file not found ", e); - } - } - - @Bean - public VariantDataService variantDataService() { - return new VariantDataServiceImpl(); - } - - @Bean - public SettingsParser settingsParser() { - return new SettingsParser(priorityFactory(), variantDataService()); - } - - @Bean - public AnalysisParser analysisParser() { - return new AnalysisParser(priorityFactory(), variantDataService()); - } - - @Bean - public AnalysisFactory analysisFactory() { - return new AnalysisFactory(sampleDataFactory(), priorityFactory(), variantDataService()); - } - - @Bean - public Exomiser exomiser() { - return new Exomiser(analysisFactory()); - } - - /** - * This takes a few seconds to de-serialise. - */ - @Bean - public JannovarData jannovarData() { - try { - return new JannovarDataSerializer(ucscFilePath().toString()).load(); - } catch (SerializationException e) { - throw new RuntimeException("Could not load Jannovar data from " + ucscFilePath(), e); - } - } - - @Bean - public VariantFactory variantFactory() { - JannovarData jannovarData = jannovarData(); - return new VariantFactory(jannovarData); - } - - @Bean - public SampleDataFactory sampleDataFactory() { - return new SampleDataFactory(); - } - - /** - * This needs a lot of RAM and is slow to create from the randomWalkFile, so - * it's set as lazy use on the command-line. - * - * @return - */ - @Lazy - @Bean - public DataMatrix randomWalkMatrix() { - String randomWalkFileNameValue = getValueOfProperty("randomWalkFileName"); - Path randomWalkFilePath = dataPath().resolve(randomWalkFileNameValue); - - String randomWalkIndexFileNameValue = getValueOfProperty("randomWalkIndexFileName"); - Path randomWalkIndexFilePath = dataPath().resolve(randomWalkIndexFileNameValue); - - return new DataMatrix(randomWalkFilePath.toString(), randomWalkIndexFilePath.toString(), true); - } - - @Bean - public FrequencyDao frequencyDao() { - return new DefaultFrequencyDao(); - } - - @Bean - public PathogenicityDao pathogenicityDao() { - return new DefaultPathogenicityDao(); - } - - @Lazy - @Bean - public CaddDao caddDao() { - return new CaddDao(indelTabixReader(), snvTabixReader()); - } - - @Lazy - @Bean - public RemmDao remmDao() { - return new RemmDao(remmTabixReader()); - } - - @Bean - public RegulatoryFeatureDao regulatoryFeatureDao() { - return new RegulatoryFeatureDao(); - } - - @Bean - public TadDao tadDao() { - return new TadDao(); - } - - @Bean - public PriorityFactoryImpl priorityFactory() { - return new PriorityFactoryImpl(); - } - - @Bean - PriorityService priorityService() { - return new PriorityService(); - } - - @Bean - ModelService modelService() { - return new ModelServiceImpl(); - } - - @Bean - OntologyService ontologyService() { - return new OntologyServiceImpl(); - } - - @Bean - DiseaseDao diseaseDao() { - return new DefaultDiseaseDao(); - } - - @Bean - HumanPhenotypeOntologyDao humanPhenotypeOntologyDao() { - return new HumanPhenotypeOntologyDao(); - } - - @Bean - MousePhenotypeOntologyDao mousePhenotypeOntologyDao() { - return new MousePhenotypeOntologyDao(); - } - - @Bean - ZebraFishPhenotypeOntologyDao zebraFishPhenotypeOntologyDao() { - return new ZebraFishPhenotypeOntologyDao(); - } - - @Bean - public TemplateEngine templateEngine() { - TemplateResolver templateResolver = new ClassLoaderTemplateResolver(); - templateResolver.setTemplateMode("HTML5"); - templateResolver.setPrefix("html/templates/"); - templateResolver.setSuffix(".html"); - templateResolver.setCacheable(true); - TemplateEngine templateEngine = new TemplateEngine(); - templateEngine.setTemplateResolver(templateResolver); - - return templateEngine; - } - - @Bean - public ResultsWriterFactory resultsWriterFactory() { - return new ResultsWriterFactory(); - } - - protected String getValueOfProperty(String property) throws PropertyNotFoundException { - String value = env.getProperty(property); - if (value == null) { - throw new PropertyNotFoundException(String.format("Property '%s' not present in application.properties", property)); - } - return value; - } - - public class PropertyNotFoundException extends RuntimeException { - - public PropertyNotFoundException(String message) { - super(message); - } - } -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/AbstractOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/AbstractOptionMarshaller.java deleted file mode 100644 index 585467add..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/AbstractOptionMarshaller.java +++ /dev/null @@ -1,55 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import java.util.Objects; -import org.apache.commons.cli.Option; -import org.springframework.stereotype.Component; - -/** - * - * @author Jules Jacobsen - */ -@Component -public abstract class AbstractOptionMarshaller implements OptionMarshaller { - - protected Option option; - - @Override - public String getCommandLineParameter() { - return option.getLongOpt(); - } - - @Override - public Option getOption() { - return option; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 29 * hash + Objects.hashCode(this.option); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final AbstractOptionMarshaller other = (AbstractOptionMarshaller) obj; - return Objects.equals(this.option, other.option); - } - - @Override - public String toString() { - return String.format("OptionMarshaller for: '%s'", getCommandLineParameter()); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/BatchFileOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/BatchFileOptionMarshaller.java deleted file mode 100644 index 5a46678b5..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/BatchFileOptionMarshaller.java +++ /dev/null @@ -1,32 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class BatchFileOptionMarshaller extends AbstractOptionMarshaller { - - private static final String BATCH_FILE_OPTION = "batch-file"; - - public BatchFileOptionMarshaller() { - option = OptionBuilder - .withArgName("file") - .hasArg() - .withDescription("Path to batch file. This should contain a list of fully qualified path names for the settings files you wish to process. There should be one file name on each line.") - .withLongOpt(BATCH_FILE_OPTION) - .create(); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - //not direct ExomiserSettings value to set - } -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/CandidateGeneOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/CandidateGeneOptionMarshaller.java deleted file mode 100644 index 6a902be17..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/CandidateGeneOptionMarshaller.java +++ /dev/null @@ -1,28 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.Option; - -/** - * - * @author Jules Jacobsen - */ -public class CandidateGeneOptionMarshaller extends AbstractOptionMarshaller { - - public static final String CANDIDATE_GENE_OPTION = "candidate-gene"; - - public CandidateGeneOptionMarshaller() { - option = new Option(null, CANDIDATE_GENE_OPTION, true, "Gene symbol of known or suspected gene association e.g. FGFR2"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.candidateGene(values[0]); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/DiseaseIdOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/DiseaseIdOptionMarshaller.java deleted file mode 100644 index 236567477..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/DiseaseIdOptionMarshaller.java +++ /dev/null @@ -1,32 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.Option; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class DiseaseIdOptionMarshaller extends AbstractOptionMarshaller { - - private static final Logger logger = LoggerFactory.getLogger(DiseaseIdOptionMarshaller.class); - - public static final String DISEASE_ID_OPTION = "disease-id"; - - public DiseaseIdOptionMarshaller() { - option = new Option("D", DISEASE_ID_OPTION, true, "OMIM ID for disease being sequenced. e.g. OMIM:101600"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.diseaseId(values[0]); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FrequencyKnownVariantOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FrequencyKnownVariantOptionMarshaller.java deleted file mode 100644 index 6746a24c2..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FrequencyKnownVariantOptionMarshaller.java +++ /dev/null @@ -1,41 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class FrequencyKnownVariantOptionMarshaller extends AbstractOptionMarshaller { - - public static final String REMOVE_KNOWN_VARIANTS_OPTION = "remove-known-variants"; - - public FrequencyKnownVariantOptionMarshaller() { - option = OptionBuilder - .hasOptionalArg() - .withType(Boolean.class) - .withArgName("true/false") - .withDescription("Filter out all variants with an entry in dbSNP/ESP/ExAC (regardless of frequency).") - .withLongOpt(REMOVE_KNOWN_VARIANTS_OPTION) - .create(); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - if (values == null) { - //default is not to remove variants with a frequency from a study - //having this triggered from the command line is the same as saying values[0] == true - settingsBuilder.removeKnownVariants(true); - } else { - //but the json/properties file specify true or false - settingsBuilder.removeKnownVariants(Boolean.parseBoolean(values[0])); - } - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FrequencyThresholdOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FrequencyThresholdOptionMarshaller.java deleted file mode 100644 index 3ec842c1b..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FrequencyThresholdOptionMarshaller.java +++ /dev/null @@ -1,28 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.Option; - -/** - * - * @author Jules Jacobsen - */ -public class FrequencyThresholdOptionMarshaller extends AbstractOptionMarshaller { - - public static final String MAX_FREQ_OPTION = "max-freq"; - - public FrequencyThresholdOptionMarshaller() { - option = new Option("F", MAX_FREQ_OPTION, true, "Maximum frequency threshold for variants to be retained. e.g. 100.00 will retain all variants. Default: 100.00"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.maximumFrequency(Float.parseFloat(values[0])); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FullAnalysisOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FullAnalysisOptionMarshaller.java deleted file mode 100644 index a7ed42677..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/FullAnalysisOptionMarshaller.java +++ /dev/null @@ -1,34 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class FullAnalysisOptionMarshaller extends AbstractOptionMarshaller { - - public static final String RUN_FULL_ANALYSIS_OPTION = "full-analysis"; - - public FullAnalysisOptionMarshaller() { - option = OptionBuilder - .hasArg() - .withArgName("true/false") - .withDescription("Run the analysis such that all variants are run through all filters. This will take longer, but give more complete results. Default is false") - .withLongOpt(RUN_FULL_ANALYSIS_OPTION) - .create(); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - //default is false - settingsBuilder.runFullAnalysis(Boolean.parseBoolean(values[0])); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/GenesToKeepFilterOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/GenesToKeepFilterOptionMarshaller.java deleted file mode 100644 index 0e2912496..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/GenesToKeepFilterOptionMarshaller.java +++ /dev/null @@ -1,65 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import java.util.LinkedHashSet; -import java.util.Set; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import org.apache.commons.cli.OptionBuilder; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class GenesToKeepFilterOptionMarshaller extends AbstractOptionMarshaller { - - private static final Logger logger = LoggerFactory.getLogger(SeedGenesOptionMarshaller.class); - - public static final String GENES_TO_KEEP_OPTION = "genes-to-keep"; - - public GenesToKeepFilterOptionMarshaller() { - option = OptionBuilder - .hasArgs() - .withArgName("Entrez geneId") - .withValueSeparator(',') - .withDescription("Comma separated list of seed genes (Entrez gene IDs) for filtering") - .withLongOpt(GENES_TO_KEEP_OPTION) - .create(); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.genesToKeepList(parseGenesToKeepList(values)); - } - - private Set parseGenesToKeepList(String[] values) { - - Set returnList = new LinkedHashSet<>(); - - if (values.length == 0) { - return returnList; - } - - Pattern entrezGeneIdPattern = Pattern.compile("[0-9]+"); - - for (String string : values) { - Matcher entrezGeneIdPatternMatcher = entrezGeneIdPattern.matcher(string); - if (entrezGeneIdPatternMatcher.matches()) { - Integer integer = Integer.parseInt(string.trim()); - returnList.add(integer); - } else { - logger.error("Malformed Entrez gene ID input string \"{}\". Term \"{}\" does not match the Entrez gene ID identifier pattern: {}", values, string, entrezGeneIdPattern); - } - } - - return returnList; - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/GeneticIntervalOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/GeneticIntervalOptionMarshaller.java deleted file mode 100644 index de5a70a31..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/GeneticIntervalOptionMarshaller.java +++ /dev/null @@ -1,41 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; - -import org.apache.commons.cli.Option; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class GeneticIntervalOptionMarshaller extends AbstractOptionMarshaller { - - private static final Logger logger = LoggerFactory.getLogger(GeneticIntervalOptionMarshaller.class); - - public static final String GENETIC_INTERVAL_OPTION = "restrict-interval"; - - public GeneticIntervalOptionMarshaller() { - option = new Option("R", GENETIC_INTERVAL_OPTION, true, "Restrict to region/interval (e.g., chr2:12345-67890)"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - if (values == null || values.length == 0 || values[0].isEmpty()) { - //use the default builder value - return; - } - // FIXME: First load Jannovar DB, use JannovarData#refDict, then parse interval! - settingsBuilder.geneticInterval(GeneticInterval.parseString(HG19RefDictBuilder.build(), values[0])); - } - - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/HiPhiveOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/HiPhiveOptionMarshaller.java deleted file mode 100644 index 79ea13e10..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/HiPhiveOptionMarshaller.java +++ /dev/null @@ -1,51 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class HiPhiveOptionMarshaller extends AbstractOptionMarshaller { - - public static final String HIPHIVE_PARAMS_OPTION = "hiphive-params"; - - public HiPhiveOptionMarshaller() { - option = OptionBuilder - .hasArgs() - .withArgName("type") - .withType(String.class) - .withValueSeparator(',') - .withDescription(String.format("Comma separated list of optional parameters for %s: human, mouse, fish, ppi. " - + "e.g. --%s=human or --%s=human,mouse,ppi", "hiphive", HIPHIVE_PARAMS_OPTION, HIPHIVE_PARAMS_OPTION)) - .withLongOpt(HIPHIVE_PARAMS_OPTION) - .create("E"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.exomiser2Params(parseExomiser2Params(values)); - } - - private String parseExomiser2Params(String[] values) { - String exomiser2Params = ""; - if (values.length == 0) { - return exomiser2Params; - } - for (String token : values) { - token = token.trim(); - if (exomiser2Params.equals("")) { - exomiser2Params = token; - } else { - exomiser2Params = exomiser2Params + "," + token; - } - } - return exomiser2Params; - } -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/HpoIdsOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/HpoIdsOptionMarshaller.java deleted file mode 100644 index 2cc3b9fd2..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/HpoIdsOptionMarshaller.java +++ /dev/null @@ -1,75 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import java.util.ArrayList; -import java.util.List; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import org.apache.commons.cli.OptionBuilder; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class HpoIdsOptionMarshaller extends AbstractOptionMarshaller { - - private static final Logger logger = LoggerFactory.getLogger(HpoIdsOptionMarshaller.class); - - public static final String HPO_IDS_OPTION = "hpo-ids"; - - public HpoIdsOptionMarshaller() { - option = OptionBuilder - .hasArgs() - .withArgName("HPO ID") - .withValueSeparator(',') - .withDescription("Comma separated list of HPO IDs for the sample being sequenced e.g. HP:0000407,HP:0009830,HP:0002858") - .withLongOpt(HPO_IDS_OPTION) - .create(); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.hpoIdList(parseHpoStringList(values)); - } - - private List parseHpoStringList(String[] values) { - logger.debug("Parsing HPO values from: {}", values); - - List hpoList = new ArrayList<>(); - - if (values.length == 0) { - return hpoList; - } - - Pattern hpoPattern = Pattern.compile("HP:[0-9]{7}"); - //I've gone for a more verbose splitting and individual token parsing - //instead of doing while hpoMatcher.matches(); hpoList.add(hpoMatcher.group()) - //on the whole input string so that the user has a warning about any invalid HPO ids - for (String token : values) { - token = token.trim(); - if (token.isEmpty()) { - continue; - } - Matcher hpoMatcher = hpoPattern.matcher(token); - if (hpoMatcher.matches()) { /* A well formed HPO term starts with "HP:" and has ten characters. */ - - //ideally we need an HPO class as the second half of the ID is an integer. - //TODO: add Hpo class to exomiser.core - Phenodigm.core already has one. - - hpoList.add(token); - } else { - logger.error("Malformed HPO input string \"{}\". Term \"{}\" does not match the HPO identifier pattern: {}", values, token, hpoPattern); - } - } - - return hpoList; - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/InheritanceModeOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/InheritanceModeOptionMarshaller.java deleted file mode 100644 index 84a568f9f..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/InheritanceModeOptionMarshaller.java +++ /dev/null @@ -1,50 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import org.apache.commons.cli.Option; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class InheritanceModeOptionMarshaller extends AbstractOptionMarshaller { - - private static final Logger logger = LoggerFactory.getLogger(InheritanceModeOptionMarshaller.class); - - public static final String MODE_OF_INHERITANCE_OPTION = "inheritance-mode"; - - public InheritanceModeOptionMarshaller() { - option = new Option("I", MODE_OF_INHERITANCE_OPTION, true, "Filter variants for inheritance pattern (AR, AD, X)"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.modeOfInheritance(parseInheritanceMode(values[0])); - } - - private ModeOfInheritance parseInheritanceMode(String value) { - switch (value) { - case "AR": - case "AUTOSOMAL_RECESSIVE": - return ModeOfInheritance.AUTOSOMAL_RECESSIVE; - case "AD": - case "AUTOSOMAL_DOMINANT": - return ModeOfInheritance.AUTOSOMAL_DOMINANT; - case "X": - case "X_RECESSIVE": - return ModeOfInheritance.X_RECESSIVE; - default: - logger.info("value {} is not one of AR, AD or X - inheritance mode has not been set", value); - return ModeOfInheritance.UNINITIALIZED; - } - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/NumGenesOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/NumGenesOptionMarshaller.java deleted file mode 100644 index b09f11e0a..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/NumGenesOptionMarshaller.java +++ /dev/null @@ -1,28 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.Option; - -/** - * - * @author Jules Jacobsen - */ -public class NumGenesOptionMarshaller extends AbstractOptionMarshaller { - - public static final String NUM_GENES_OPTION = "num-genes"; - - public NumGenesOptionMarshaller() { - option = new Option(null, NUM_GENES_OPTION, true, "Number of genes to show in output"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.numberOfGenesToShow(Integer.parseInt(values[0])); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OptionMarshaller.java deleted file mode 100644 index d67cafe4b..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OptionMarshaller.java +++ /dev/null @@ -1,22 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.Option; - -/** - * - * @author Jules Jacobsen - */ -public interface OptionMarshaller { - - public String getCommandLineParameter(); - - public Option getOption(); - - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder); -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutFileFormatOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutFileFormatOptionMarshaller.java deleted file mode 100644 index c6eb6424c..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutFileFormatOptionMarshaller.java +++ /dev/null @@ -1,79 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import java.util.ArrayList; -import java.util.EnumSet; -import java.util.List; -import java.util.Set; -import org.apache.commons.cli.OptionBuilder; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class OutFileFormatOptionMarshaller extends AbstractOptionMarshaller { - - private static final Logger logger = LoggerFactory.getLogger(OutFileFormatOptionMarshaller.class); - - public static final String OUT_FILE_FORMAT_OPTION = "out-format"; - - public OutFileFormatOptionMarshaller() { - option = OptionBuilder - .hasArgs() - .withArgName("type") - .withType(OutputFormat.class) - .withValueSeparator(',') - .withDescription("Comma separated list of format options: HTML, VCF, TAB-GENE or TAB-VARIANT,. Defaults to HTML if not specified. e.g. --out-format=TAB-VARIANT or --out-format=TAB-GENE,TAB-VARIANT,HTML,VCF") - .withLongOpt(OUT_FILE_FORMAT_OPTION) - .create("f"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.outputFormats(parseOutputFormat(values)); - } - - private Set parseOutputFormat(String[] values) { - List outputFormats = new ArrayList<>(); - logger.debug("Parsing output options: {}", values); - - for (String outputFormatString : values) { - switch (outputFormatString.trim()) { - case "HTML": - outputFormats.add(OutputFormat.HTML); - break; - case "TSV_GENE": - case "TAB-GENE": - case "TSV-GENE": - outputFormats.add(OutputFormat.TSV_GENE); - break; - case "TSV_VARIANT": - case "TAB-VARIANT": - case "TSV-VARIANT": - outputFormats.add(OutputFormat.TSV_VARIANT); - break; - case "VCF": - outputFormats.add(OutputFormat.VCF); - break; - case "PHENOGRID": - outputFormats.add(OutputFormat.PHENOGRID); - break; - default: - logger.info("{} is not a recognised output format. Please choose one or more of HTML, TAB-GENE, TAB-VARIANT, VCF - defaulting to HTML", outputFormatString); - outputFormats.add(OutputFormat.HTML); - break; - } - } - logger.debug("Setting output formats: {}", outputFormats); - return EnumSet.copyOf(outputFormats); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutFilePrefixOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutFilePrefixOptionMarshaller.java deleted file mode 100644 index 8f420fc8e..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutFilePrefixOptionMarshaller.java +++ /dev/null @@ -1,28 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.Option; - -/** - * - * @author Jules Jacobsen - */ -public class OutFilePrefixOptionMarshaller extends AbstractOptionMarshaller { - - public static final String OUT_FILE_PREFIX_OPTION = "out-prefix"; - - public OutFilePrefixOptionMarshaller() { - option = new Option("o", OUT_FILE_PREFIX_OPTION, true, "Out file prefix. Will default to vcf-filename-exomiser-results"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.outputPrefix(values[0]); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshaller.java deleted file mode 100644 index 303f743d0..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshaller.java +++ /dev/null @@ -1,40 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class OutputPassOnlyVariantsOptionMarshaller extends AbstractOptionMarshaller { - - public static final String OUTPUT_PASS_VARIANTS_ONLY_OPTION = "output-pass-variants-only"; - - public OutputPassOnlyVariantsOptionMarshaller () { - option = OptionBuilder - .hasOptionalArg() - .withType(Boolean.class) - .withArgName("true/false") - .withDescription("Only write out PASS variants in TSV and VCF files.") - .withLongOpt(OUTPUT_PASS_VARIANTS_ONLY_OPTION) - .create(); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - if (values == null) { - //default is to output all variants, regardless of their filtered status. - //having this triggered from the command line is the same as saying values[0] == true - settingsBuilder.outputPassVariantsOnly(true); - } else { - //but the json/properties file specify true or false - settingsBuilder.outputPassVariantsOnly(Boolean.parseBoolean(values[0])); - } - } -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshaller.java deleted file mode 100644 index 749f09588..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshaller.java +++ /dev/null @@ -1,42 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class PathogenicityFilterCutOffOptionMarshaller extends AbstractOptionMarshaller { - - public static final String KEEP_NON_PATHOGENIC_VARIANTS_OPTION = "keep-non-pathogenic"; - - public PathogenicityFilterCutOffOptionMarshaller() { - option = OptionBuilder - .hasOptionalArg() - .withType(Boolean.class) - .withArgName("true/false") - .withDescription("Keep the predicted non-pathogenic variants that are normally removed by default. " - + "These are defined as syonymous, intergenic, intronic, upstream, downstream or intronic ncRNA variants. " - + "This setting can optionally take a true/false argument. Not including the argument is equivalent to specifying 'false'.") - .withLongOpt(KEEP_NON_PATHOGENIC_VARIANTS_OPTION) - .create("P"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - if (values == null) { - //default is to remove the non-pathogenic variants, so this should be false - settingsBuilder.removePathFilterCutOff(true); - } else { - //but the json/properties file specifies true or false, hence the optionArg - settingsBuilder.removePathFilterCutOff(Boolean.parseBoolean(values[0])); - } - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PedFileOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PedFileOptionMarshaller.java deleted file mode 100644 index 6273b32f7..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PedFileOptionMarshaller.java +++ /dev/null @@ -1,34 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import java.nio.file.Paths; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class PedFileOptionMarshaller extends AbstractOptionMarshaller { - - public static final String PED_OPTION = "ped"; - - public PedFileOptionMarshaller() { - option = OptionBuilder - .withArgName("file") - .hasArg() - .withDescription("Path to pedigree (ped) file. Required if the vcf file is for a family.") - .withLongOpt(PED_OPTION) - .create("p"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.pedFilePath(Paths.get(values[0])); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PrioritiserOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PrioritiserOptionMarshaller.java deleted file mode 100644 index 796c24cd8..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/PrioritiserOptionMarshaller.java +++ /dev/null @@ -1,124 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.cli.CommandLineParseError; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import java.util.ArrayList; -import java.util.LinkedHashMap; -import java.util.List; -import java.util.Map; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class PrioritiserOptionMarshaller extends AbstractOptionMarshaller { - - public static final String PRIORITISER_OPTION = "prioritiser"; //values for this are handled by PriorityType - - private final Map prioritiserCliValues = new LinkedHashMap<>(); - - public PrioritiserOptionMarshaller() { - - prioritiserCliValues.put("hiphive", PriorityType.HIPHIVE_PRIORITY); - prioritiserCliValues.put("phenix", PriorityType.PHENIX_PRIORITY); - prioritiserCliValues.put("phive", PriorityType.PHIVE_PRIORITY); - prioritiserCliValues.put("exomewalker", PriorityType.EXOMEWALKER_PRIORITY); - prioritiserCliValues.put("omim", PriorityType.OMIM_PRIORITY); - prioritiserCliValues.put("uber-pheno", PriorityType.UBERPHENO_PRIORITY); - //'none' is the default - prioritiserCliValues.put("none", PriorityType.NONE); - - List commandLineValues = new ArrayList<>(prioritiserCliValues.keySet()); - - option = OptionBuilder - .hasArg() - .withArgName("name") - .withValueSeparator() - .withDescription(buildPrioritiserDescription(PRIORITISER_OPTION, commandLineValues)) - .withLongOpt(PRIORITISER_OPTION) - .create(); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - String value = values[0].toLowerCase(); - PriorityType priorityType = prioritiserCliValues.get(value); - if (priorityType == null) { - throw new CommandLineParseError(buildErrorMessage(value)); - } - settingsBuilder.usePrioritiser(priorityType); - } - - /** - * There is a lot of messing about needed to get the Prioritiser option - * description sorted, but this will now automatically change to reflect - * changes in any names or types which are added to the - * {@link de.charite.compbio.exomiser.core.prioritisers.PriorityType} - * - * @param prioritiserLongOpt - * @return - */ - private String buildPrioritiserDescription(String prioritiserLongOpt, List commandLineValues) { - //Build up the description this should look like this: - //"Name of the PRIORITISER_OPTION used to score the genes. - // Can be one of: inheritance-mode, phenomizer or dynamic-phenodigm. - // e.g. --PRIORITISER_OPTION=dynamic-phenodigm" - - StringBuilder priorityOptionDescriptionBuilder = new StringBuilder("Name of the prioritiser used to score the genes. Can be one of: "); - - int numPriorityTypes = commandLineValues.size(); - int lastType = numPriorityTypes - 1; - int secondLastType = numPriorityTypes - 2; - - for (int i = 0; i < numPriorityTypes; i++) { - String cliValue = commandLineValues.get(i); - if (i == lastType) { - priorityOptionDescriptionBuilder.append(cliValue) - .append(". e.g. --").append(prioritiserLongOpt) - .append("=") - .append(cliValue); - } else if (i == secondLastType) { - priorityOptionDescriptionBuilder.append(cliValue).append(" or "); - } else { - priorityOptionDescriptionBuilder.append(cliValue).append(", "); - } - } - - return priorityOptionDescriptionBuilder.toString(); - } - - private String buildErrorMessage(String value) { - StringBuilder errorMessage = new StringBuilder(); - errorMessage.append(String.format("Invalid %s option: '%s'. ", PRIORITISER_OPTION, value)); - errorMessage.append("Valid options are: "); - errorMessage.append(prioritiserCliValues.keySet()); - return errorMessage.toString(); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/QualityThresholdOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/QualityThresholdOptionMarshaller.java deleted file mode 100644 index 01371ae2a..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/QualityThresholdOptionMarshaller.java +++ /dev/null @@ -1,28 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.Option; - -/** - * - * @author Jules Jacobsen - */ -public class QualityThresholdOptionMarshaller extends AbstractOptionMarshaller { - - public static final String MIN_QUAL_OPTION = "min-qual"; - - public QualityThresholdOptionMarshaller() { - option = new Option("Q", MIN_QUAL_OPTION, true, "Mimimum quality threshold for variants as specifed in VCF 'QUAL' column. Default: 0"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.minimumQuality(Float.parseFloat(values[0])); - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/SeedGenesOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/SeedGenesOptionMarshaller.java deleted file mode 100644 index 946efe74c..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/SeedGenesOptionMarshaller.java +++ /dev/null @@ -1,69 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import java.util.ArrayList; -import java.util.List; -import java.util.regex.Matcher; -import java.util.regex.Pattern; -import org.apache.commons.cli.OptionBuilder; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class SeedGenesOptionMarshaller extends AbstractOptionMarshaller { - - private static final Logger logger = LoggerFactory.getLogger(SeedGenesOptionMarshaller.class); - - public static final String SEED_GENES_OPTION = "seed-genes"; - - public SeedGenesOptionMarshaller() { - option = OptionBuilder - .hasArgs() - .withArgName("Entrez geneId") - .withValueSeparator(',') - .withDescription("Comma separated list of seed genes (Entrez gene IDs) for random walk") - .withLongOpt(SEED_GENES_OPTION) - .create("S"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - settingsBuilder.seedGeneList(parseEntrezSeedGeneList(values)); - } - - private List parseEntrezSeedGeneList(String[] values) { - - List returnList = new ArrayList<>(); - - if (values.length == 0) { - return returnList; - } - - Pattern entrezGeneIdPattern = Pattern.compile("[0-9]+"); - - for (String string : values) { - if (string.isEmpty()) { - continue; - } - String trimmedString = string.trim(); - Matcher entrezGeneIdPatternMatcher = entrezGeneIdPattern.matcher(trimmedString); - if (entrezGeneIdPatternMatcher.matches()) { - Integer integer = Integer.parseInt(trimmedString); - returnList.add(integer); - } else { - logger.error("Malformed Entrez gene ID input string \"{}\". Term \"{}\" does not match the Entrez gene ID identifier pattern: {}", values, string, entrezGeneIdPattern); - } - } - - return returnList; - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/SettingsFileOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/SettingsFileOptionMarshaller.java deleted file mode 100644 index e5650d230..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/SettingsFileOptionMarshaller.java +++ /dev/null @@ -1,33 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class SettingsFileOptionMarshaller extends AbstractOptionMarshaller { - - public static final String SETTINGS_FILE_OPTION = "settings-file"; - - public SettingsFileOptionMarshaller() { - option = OptionBuilder - .withArgName("file") - .hasArg() - .withDescription("Path to settings file. Any settings specified in the file will be overidden by parameters added on the command-line.") - .withLongOpt(SETTINGS_FILE_OPTION) - .create(); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - //no direct ExomiserSettings value to set - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/TargetFilterOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/TargetFilterOptionMarshaller.java deleted file mode 100644 index a69a2e6a1..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/TargetFilterOptionMarshaller.java +++ /dev/null @@ -1,42 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class TargetFilterOptionMarshaller extends AbstractOptionMarshaller { - - public static final String KEEP_OFF_TARGET_OPTION = "keep-off-target"; - - public TargetFilterOptionMarshaller() { - option = OptionBuilder - .hasOptionalArg() - .withType(Boolean.class) - .withArgName("true/false") - .withDescription("Keep the off-target variants that are normally removed by default. " - + "These are defined as intergenic, intronic, upstream, downstream or intronic ncRNA variants. " - + "This setting can optionally take a true/false argument. Not including the argument is equivalent to specifying 'true'.") - .withLongOpt(KEEP_OFF_TARGET_OPTION) - .create("T"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - //the default should be to remove the off-target variants - if (values == null) { - settingsBuilder.keepOffTargetVariants(true); - } else { - //but the json/properties file specifies true or false, hence the optionArg - settingsBuilder.keepOffTargetVariants(Boolean.parseBoolean(values[0])); - } - } - -} diff --git a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/VcfFileOptionMarshaller.java b/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/VcfFileOptionMarshaller.java deleted file mode 100644 index fc28fe642..000000000 --- a/exomiser-cli/src/main/java/de/charite/compbio/exomiser/cli/options/VcfFileOptionMarshaller.java +++ /dev/null @@ -1,38 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import java.nio.file.Paths; -import org.apache.commons.cli.OptionBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class VcfFileOptionMarshaller extends AbstractOptionMarshaller { - - public static final String VCF_OPTION = "vcf"; - - public VcfFileOptionMarshaller() { - option = OptionBuilder - .withArgName("file") - .hasArg() - .withDescription("Path to VCF file with mutations to be analyzed. Can be either for an individual or a family.") - .withLongOpt(VCF_OPTION) - .create("v"); - } - - @Override - public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { - if (values[0].isEmpty()) { - settingsBuilder.vcfFilePath(null); - } else { - settingsBuilder.vcfFilePath(Paths.get(values[0])); - } - } - -} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/BatchFileReader.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/BatchFileReader.java new file mode 100644 index 000000000..0442a8c55 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/BatchFileReader.java @@ -0,0 +1,65 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ +package org.monarchinitiative.exomiser.cli; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.ArrayList; +import java.util.List; +import java.util.function.Predicate; +import java.util.stream.Stream; + +import static java.util.stream.Collectors.toList; + +/** + * Reads in Exomiser batch files and returns a list of Paths to the + * settings/analysis files. The reader expects a single path per line. + * + * @author Jules Jacobsen + */ +public class BatchFileReader { + + private static final Logger logger = LoggerFactory.getLogger(BatchFileReader.class); + + public List readPathsFromBatchFile(Path batchFile) { + logger.info("Processing batch file {}", batchFile); + try (Stream lines = Files.lines(batchFile, Charset.defaultCharset())) { + return lines.filter(commentLines()).filter(emptyLines()).map(line -> Paths.get(line.trim())).collect(toList()); + } catch (IOException ex) { + logger.error("Unable to read batch file {}", batchFile, ex); + } + return new ArrayList<>(); + } + + private Predicate commentLines() { + return line -> !line.startsWith("#"); + } + + private Predicate emptyLines() { + return line -> !line.isEmpty(); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/CommandLineOptionsParser.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/CommandLineOptionsParser.java new file mode 100644 index 000000000..a3354c929 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/CommandLineOptionsParser.java @@ -0,0 +1,121 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli; + +import org.apache.commons.cli.CommandLine; +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.cli.options.OptionMarshaller; +import org.monarchinitiative.exomiser.cli.options.SettingsFileOptionMarshaller; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.stereotype.Component; + +import javax.annotation.Resource; +import java.io.IOException; +import java.io.Reader; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.Map; +import java.util.Properties; + +/** + * Handles parsing of the commandline input to provide properly typed data to + * the rest of the application in the form of an ExomiserSettings object. + * + * @author Jules Jacobsen + */ +@Component +public class CommandLineOptionsParser { + + private static final Logger logger = LoggerFactory.getLogger(CommandLineOptionsParser.class); + + @Resource + private Map optionMarshallers; + + public Settings parseCommandLine(CommandLine commandLine) { + logger.info("Parsing {} command line options:", commandLine.getOptions().length); + + SettingsBuilder settingsBuilder = Settings.builder(); + + if (commandLine.hasOption(SettingsFileOptionMarshaller.SETTINGS_FILE_OPTION)) { + Path settingsFile = Paths.get(commandLine.getOptionValue(SettingsFileOptionMarshaller.SETTINGS_FILE_OPTION)); + settingsBuilder = parseSettings(settingsFile); + logger.warn("Settings file parameters will be overridden by command-line parameters!"); + } + for (Option option : commandLine.getOptions()) { + logger.info("--{} : {}", option.getLongOpt(), option.getValues()); + String key = option.getLongOpt(); + String[] values = option.getValues(); + setBuilderValue(key, values, settingsBuilder); + } + + //return a Map + return settingsBuilder.build(); + } + + /** + * Parses the settings file and sets the values from this into a settings + * object. + * + * @param settingsFile + * @return + */ + public Settings parseSettingsFile(Path settingsFile) { + SettingsBuilder settingsBuilder = parseSettings(settingsFile); + return settingsBuilder.build(); + } + + private SettingsBuilder parseSettings(Path settingsFile) { + SettingsBuilder settingsBuilder = Settings.builder(); + + try (Reader reader = Files.newBufferedReader(settingsFile, Charset.defaultCharset())) { + Properties settingsProperties = new Properties(); + + settingsProperties.load(reader); + logger.info("Loaded settings from properties file: {}", settingsProperties); + for (String key : settingsProperties.stringPropertyNames()) { + String[] values = settingsProperties.getProperty(key).split(","); + setBuilderValue(key, values, settingsBuilder); + } + + } catch (IOException ex) { + logger.error("Unable to parse settings from file {}", settingsFile, ex); + } + return settingsBuilder; + } + + private void setBuilderValue(String key, String[] values, SettingsBuilder settingsBuilder) { + + if (optionMarshallers.containsKey(key)) { + OptionMarshaller optionMarshaller = optionMarshallers.get(key); + optionMarshaller.applyValuesToSettingsBuilder(values, settingsBuilder); + } + } +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/CommandLineParseError.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/CommandLineParseError.java new file mode 100644 index 000000000..efc9fbef1 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/CommandLineParseError.java @@ -0,0 +1,42 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli; + +/** + * + * @author Jules Jacobsen + */ +public class CommandLineParseError extends RuntimeException { + + public CommandLineParseError(String message, Throwable cause) { + super(message, cause); + } + + public CommandLineParseError(String message) { + super(message); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/ExomiserCommandLineRunner.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/ExomiserCommandLineRunner.java new file mode 100644 index 000000000..279183971 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/ExomiserCommandLineRunner.java @@ -0,0 +1,156 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.cli; + +import org.apache.commons.cli.*; +import org.monarchinitiative.exomiser.core.Exomiser; +import org.monarchinitiative.exomiser.core.analysis.*; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; +import org.monarchinitiative.exomiser.core.writers.OutputSettings; +import org.monarchinitiative.exomiser.core.writers.ResultsWriter; +import org.monarchinitiative.exomiser.core.writers.ResultsWriterFactory; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.boot.CommandLineRunner; +import org.springframework.stereotype.Component; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.List; + +/** + * @author Jules Jacobsen + */ +@Component +public class ExomiserCommandLineRunner implements CommandLineRunner { + + private static final Logger logger = LoggerFactory.getLogger(ExomiserCommandLineRunner.class); + + @Autowired + private CommandLineOptionsParser commandLineOptionsParser; + @Autowired + private Options options; + + @Autowired + private AnalysisParser analysisParser; + @Autowired + private SettingsParser settingsParser; + @Autowired + private Exomiser exomiser; + @Autowired + private ResultsWriterFactory resultsWriterFactory; + + @Value("buildVersion") + private String buildVersion; + + @Override + public void run(String... strings) { + if (strings.length == 0) { + printHelp(); + logger.error("Please supply some command line arguments - none found"); + } + CommandLine commandLine = parseCommandLineOptions(strings); + if (commandLine.hasOption("help")) { + printHelp(); + } + runAnalyses(commandLine); + } + + private void runAnalyses(CommandLine commandLine) { + if (commandLine.hasOption("analysis")) { + Path analysisScript = Paths.get(commandLine.getOptionValue("analysis")); + runAnalysisFromScript(analysisScript); + } else if (commandLine.hasOption("analysis-batch")) { + Path analysisBatchFile = Paths.get(commandLine.getOptionValue("analysis-batch")); + List analysisScripts = new BatchFileReader().readPathsFromBatchFile(analysisBatchFile); + logger.info("Running {} analyses from analysis batch file.", analysisScripts.size()); + //this *can* be run in parallel using parallelStream() at the expense of RAM in order to hold all the variants in memory. + //like this: + //analysisScripts.parallelStream().forEach(this::runAnalysisFromScript); + //HOWEVER there may be threading issues so this needs investigation. + analysisScripts.forEach(analysis ->{ + logger.info("Running analysis: {}", analysis); + runAnalysisFromScript(analysis); + }); + } + //check the args for a batch file first as this option is otherwise ignored + else if (commandLine.hasOption("batch-file")) { + Path batchFilePath = Paths.get(commandLine.getOptionValue("batch-file")); + List settingsFiles = new BatchFileReader().readPathsFromBatchFile(batchFilePath); + logger.info("Running {} analyses from settings batch file.", settingsFiles.size()); + for (Path settingsFile : settingsFiles) { + logger.info("Running settings: {}", settingsFile); + Settings settings = commandLineOptionsParser.parseSettingsFile(settingsFile); + runAnalysisFromSettings(settings); + } + } else { + //make a single SettingsBuilder + Settings settings = commandLineOptionsParser.parseCommandLine(commandLine); + runAnalysisFromSettings(settings); + } + } + + private CommandLine parseCommandLineOptions(String[] args) { + CommandLineParser parser = new DefaultParser(); + try { + return parser.parse(options, args); + } catch (ParseException ex) { + String message = "Unable to parse command line arguments. Please check you have typed the parameters correctly." + + " Use command --help for a list of commands."; + throw new CommandLineParseError(message, ex); + } + } + + private void printHelp() { + HelpFormatter formatter = new HelpFormatter(); + String launchCommand = String.format("java -jar exomizer-cli-%s.jar [...]", buildVersion); + formatter.printHelp(launchCommand, options); + } + + private void runAnalysisFromScript(Path analysisScript) { + Analysis analysis = analysisParser.parseAnalysis(analysisScript); + OutputSettings outputSettings = analysisParser.parseOutputSettings(analysisScript); + runAnalysisAndWriteResults(analysis, outputSettings); + } + + private void runAnalysisFromSettings(Settings settings) { + if (settings.isValid()) { + Analysis analysis = settingsParser.parse(settings); + runAnalysisAndWriteResults(analysis, settings); + } + } + + private void runAnalysisAndWriteResults(Analysis analysis, OutputSettings outputSettings) { + AnalysisResults analysisResults = exomiser.run(analysis); + writeResults(analysis, analysisResults, outputSettings); + } + + private void writeResults(Analysis analysis, AnalysisResults analysisResults, OutputSettings outputSettings) { + logger.info("Writing results"); + for (OutputFormat outFormat : outputSettings.getOutputFormats()) { + ResultsWriter resultsWriter = resultsWriterFactory.getResultsWriter(outFormat); + resultsWriter.writeFile(analysis, analysisResults, outputSettings); + } + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/Main.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/Main.java new file mode 100644 index 000000000..800332d5e --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/Main.java @@ -0,0 +1,87 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ +package org.monarchinitiative.exomiser.cli; + +import org.monarchinitiative.exomiser.cli.config.MainConfig; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.context.annotation.AnnotationConfigApplicationContext; + +import java.net.URISyntaxException; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.security.CodeSource; +import java.util.Locale; + + +/** + * Main class for calling off the command line in the Exomiser package. + * + * @author Jules Jacobsen + */ +public class Main { + + private static final Logger logger = LoggerFactory.getLogger(Main.class); + + private AnnotationConfigApplicationContext applicationContext; + + public static void main(String[] args) { + Main main = new Main(); + main.run(args); + } + + private void run(String[] args) { + setUpApplicationContext(); + showSplash(); + runExomiser(args); + } + + //Get Spring started - this contains the configuration of the application + private AnnotationConfigApplicationContext setUpApplicationContext() { + Locale.setDefault(Locale.UK); + logger.info("Locale set to {}", Locale.getDefault()); + //this is set here so that Spring can load the properties file from the jarFilePath + System.setProperty("jarFilePath", jarFilePath().toString()); + applicationContext = new AnnotationConfigApplicationContext(MainConfig.class); + return applicationContext; + } + + private Path jarFilePath() { + CodeSource codeSource = Main.class.getProtectionDomain().getCodeSource(); + try { + return Paths.get(codeSource.getLocation().toURI()).getParent(); + } catch (URISyntaxException ex) { + logger.error("Unable to find jar file", ex); + throw new RuntimeException("Unable to find jar file", ex); + } + } + + private void showSplash() { + String splash = (String) applicationContext.getBean("banner"); + System.out.println(splash); + } + + private void runExomiser(String[] args) { + ExomiserCommandLineRunner exomiserCliRunner = applicationContext.getBean(ExomiserCommandLineRunner.class); + exomiserCliRunner.run(args); + logger.info("Exomising finished - Bye!"); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/config/CommandLineOptionsConfig.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/config/CommandLineOptionsConfig.java new file mode 100644 index 000000000..e938b2574 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/config/CommandLineOptionsConfig.java @@ -0,0 +1,145 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.config; + +import org.apache.commons.cli.Option; +import org.apache.commons.cli.Options; +import org.monarchinitiative.exomiser.cli.CommandLineOptionsParser; +import org.monarchinitiative.exomiser.cli.options.*; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; + +import java.util.HashMap; +import java.util.LinkedHashSet; +import java.util.Map; +import java.util.Set; + +/** + * Spring configuration for setting-up the command-line options. If you want a + * new option on the command line, add it here. + * + * @author Jules Jacobsen + */ +@Configuration +public class CommandLineOptionsConfig { + + private static final Logger logger = LoggerFactory.getLogger(CommandLineOptionsConfig.class); + + @Bean + public CommandLineOptionsParser commandLineParser() { + return new CommandLineOptionsParser(); + } + + /** + * Add the options you want to be made available to the application here. + * + * @return the required OptionMarshallers for the system. + */ + private Set desiredOptionMarshallers() { + Set desiredOptionMarshallers = new LinkedHashSet<>(); + + //commandline parser options + desiredOptionMarshallers.add(new SettingsFileOptionMarshaller()); + desiredOptionMarshallers.add(new BatchFileOptionMarshaller()); + + //sample data files + desiredOptionMarshallers.add(new VcfFileOptionMarshaller()); + desiredOptionMarshallers.add(new PedFileOptionMarshaller()); + desiredOptionMarshallers.add(new ProbandSampleNameOptionMarshaller()); + + //analysis options + desiredOptionMarshallers.add(new HpoIdsOptionMarshaller()); + desiredOptionMarshallers.add(new InheritanceModeOptionMarshaller()); + desiredOptionMarshallers.add(new FullAnalysisOptionMarshaller()); + + //filter options + desiredOptionMarshallers.add(new FailedVariantFilterOptionMarshaller()); + desiredOptionMarshallers.add(new FrequencyThresholdOptionMarshaller()); + desiredOptionMarshallers.add(new FrequencyKnownVariantOptionMarshaller()); + desiredOptionMarshallers.add(new GeneticIntervalOptionMarshaller()); + desiredOptionMarshallers.add(new QualityThresholdOptionMarshaller()); + desiredOptionMarshallers.add(new PathogenicityFilterCutOffOptionMarshaller()); + desiredOptionMarshallers.add(new TargetFilterOptionMarshaller()); + desiredOptionMarshallers.add(new GenesToKeepFilterOptionMarshaller()); + + //prioritiser options + desiredOptionMarshallers.add(new PrioritiserOptionMarshaller()); + desiredOptionMarshallers.add(new SeedGenesOptionMarshaller()); + desiredOptionMarshallers.add(new DiseaseIdOptionMarshaller()); + desiredOptionMarshallers.add(new CandidateGeneOptionMarshaller()); + desiredOptionMarshallers.add(new HiPhiveOptionMarshaller()); + + //output options + desiredOptionMarshallers.add(new OutputPassOnlyVariantsOptionMarshaller()); + desiredOptionMarshallers.add(new NumGenesOptionMarshaller()); + desiredOptionMarshallers.add(new OutFilePrefixOptionMarshaller()); + desiredOptionMarshallers.add(new OutFileFormatOptionMarshaller()); + + return desiredOptionMarshallers; + } + + @Bean + public Map optionMarshallers() { + Map optionMarshallers = new HashMap<>(); + + for (OptionMarshaller optionMarshaller : desiredOptionMarshallers()) { + String cliParameter = optionMarshaller.getCommandLineParameter(); + logger.debug("Adding {}", optionMarshaller); + optionMarshallers.put(cliParameter, optionMarshaller); + } + return optionMarshallers; + } + + @Bean + public Options options() { + Options options = new Options(); + + options.addOption(new Option("h", "help", false, "Shows this help")); + options.addOption(new Option("H", "help", false, "Shows this help")); + options.addOption(Option.builder() + .argName("file") + .hasArg() + .desc("Path to analysis script file. This should be in yaml format.") + .longOpt("analysis") + .build()); + options.addOption(Option.builder() + .argName("file") + .hasArg() + .desc("Path to analysis batch file. This should be in plain text file with the path to a single analysis script file in yaml format on each line.") + .longOpt("analysis-batch") + .build()); + + for (OptionMarshaller optionMarshaller : desiredOptionMarshallers()) { + Option option = optionMarshaller.getOption(); + options.addOption(option); + } + + return options; + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/config/MainConfig.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/config/MainConfig.java new file mode 100644 index 000000000..89007addd --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/config/MainConfig.java @@ -0,0 +1,120 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.cli.config; + +import org.monarchinitiative.exomiser.autoconfigure.EnableExomiser; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.ComponentScan; +import org.springframework.context.annotation.Configuration; +import org.springframework.context.annotation.PropertySource; +import org.springframework.core.env.Environment; +import org.springframework.core.io.ClassPathResource; +import org.springframework.core.io.PathResource; +import org.springframework.core.io.Resource; + +import java.io.BufferedReader; +import java.io.IOException; +import java.io.InputStream; +import java.io.InputStreamReader; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; + + +/** + * Provides configuration details from the application.properties file located in + * the jarfile directory. + * + * @author Jules Jacobsen + */ +@Configuration +@ComponentScan(basePackages = {"org.monarchinitiative.exomiser.cli"}) +@PropertySource("file:${jarFilePath}/application.properties") +@EnableExomiser +public class MainConfig { + + private static final Logger logger = LoggerFactory.getLogger(MainConfig.class); + + @Autowired + private Environment env; + + /** + * Used to find the Path the Main application is running on in order to + * pick-up the user-configured properties files. + * + * @return + */ + @Bean + public Path jarFilePath() { + Path jarFilePath = Paths.get(env.getProperty("jarFilePath")); + logger.info("Jar file is running from location: {}", jarFilePath); + return jarFilePath; + } + + @Bean + public Path resultsDir(Path jarFilePath) { + //TODO: get this from env i.e. exomiser.properties? Will help with server too + Path defaultOutputDir = jarFilePath.resolve("results"); + try { + if (!defaultOutputDir.toFile().exists()) { + Files.createDirectory(defaultOutputDir); + } + } catch (IOException ex) { + logger.error("Unable to create default output directory for results {}", defaultOutputDir, ex); + } + logger.info("Default results directory set to: {}", defaultOutputDir.toAbsolutePath()); + return defaultOutputDir; + } + + @Bean + public Path exomiserDataDirectory(Path jarFilePath) { + String dataDirValue = env.getProperty("exomiser.data-directory"); + logger.info("Data source directory defined in properties as: {}", dataDirValue); + Path dataPath = jarFilePath.resolve(dataDirValue); + logger.info("Root data source directory set to: {}", dataPath.toAbsolutePath()); + return dataPath; + } + + @Bean + public Resource ehCacheConfig(Path jarFilePath) { + return new PathResource(jarFilePath.resolve("ehcache.xml")); + } + + @Bean + public String banner() { + Resource banner = new ClassPathResource("banner.txt"); + StringBuilder stringBuilder = new StringBuilder(); + try (InputStream inputStream = banner.getInputStream(); + BufferedReader reader = new BufferedReader(new InputStreamReader(inputStream, "UTF-8"))) { + String line; + while((line = reader.readLine()) != null) { + stringBuilder.append(line + "\n"); + } + } catch (IOException ex) { + logger.error("Error reading banner.txt {}", ex); + } + return stringBuilder.toString(); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/AbstractOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/AbstractOptionMarshaller.java new file mode 100644 index 000000000..d9b28c24b --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/AbstractOptionMarshaller.java @@ -0,0 +1,76 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.springframework.stereotype.Component; + +import java.util.Objects; + +/** + * + * @author Jules Jacobsen + */ +@Component +public abstract class AbstractOptionMarshaller implements OptionMarshaller { + + protected Option option; + + @Override + public String getCommandLineParameter() { + return option.getLongOpt(); + } + + @Override + public Option getOption() { + return option; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 29 * hash + Objects.hashCode(this.option); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final AbstractOptionMarshaller other = (AbstractOptionMarshaller) obj; + return Objects.equals(this.option, other.option); + } + + @Override + public String toString() { + return String.format("OptionMarshaller for: '%s'", getCommandLineParameter()); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/BatchFileOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/BatchFileOptionMarshaller.java new file mode 100644 index 000000000..7e2d6a599 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/BatchFileOptionMarshaller.java @@ -0,0 +1,52 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class BatchFileOptionMarshaller extends AbstractOptionMarshaller { + + private static final String BATCH_FILE_OPTION = "batch-file"; + + public BatchFileOptionMarshaller() { + option = Option.builder() + .argName("file") + .hasArg() + .desc("Path to batch file. This should contain a list of fully qualified path names for the settings files you wish to process. There should be one file name on each line.") + .longOpt(BATCH_FILE_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + //not direct ExomiserSettings value to set + } +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/CandidateGeneOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/CandidateGeneOptionMarshaller.java new file mode 100644 index 000000000..8226fd609 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/CandidateGeneOptionMarshaller.java @@ -0,0 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class CandidateGeneOptionMarshaller extends AbstractOptionMarshaller { + + public static final String CANDIDATE_GENE_OPTION = "candidate-gene"; + + public CandidateGeneOptionMarshaller() { + option = new Option(null, CANDIDATE_GENE_OPTION, true, "Gene symbol of known or suspected gene association e.g. FGFR2"); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.candidateGene(values[0]); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/DiseaseIdOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/DiseaseIdOptionMarshaller.java new file mode 100644 index 000000000..8c731ef3c --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/DiseaseIdOptionMarshaller.java @@ -0,0 +1,52 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +/** + * + * @author Jules Jacobsen + */ +public class DiseaseIdOptionMarshaller extends AbstractOptionMarshaller { + + private static final Logger logger = LoggerFactory.getLogger(DiseaseIdOptionMarshaller.class); + + public static final String DISEASE_ID_OPTION = "disease-id"; + + public DiseaseIdOptionMarshaller() { + option = new Option("D", DISEASE_ID_OPTION, true, "OMIM ID for disease being sequenced. e.g. OMIM:101600"); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.diseaseId(values[0]); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FailedVariantFilterOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FailedVariantFilterOptionMarshaller.java new file mode 100644 index 000000000..16368bcd7 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FailedVariantFilterOptionMarshaller.java @@ -0,0 +1,45 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings; + +/** + * @author Jules Jacobsen + */ +public class FailedVariantFilterOptionMarshaller extends AbstractOptionMarshaller { + + public static final String FAILED_VARIANT_FILTER_OPTION = "remove-failed"; + + public FailedVariantFilterOptionMarshaller() { + option = Option.builder() + .optionalArg(false) + .desc("Calling this option will tell Exomiser to ignore any variants marked in the input VCF as having failed any previous filters from other upstream analyses. In other words, unless a variant has a 'PASS' or '.' in the FILTER field of the input VCF, it will be excluded from the analysis by the Exomiser.") + .longOpt(FAILED_VARIANT_FILTER_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, Settings.SettingsBuilder settingsBuilder) { + settingsBuilder.removeFailed(true); + } +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FrequencyKnownVariantOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FrequencyKnownVariantOptionMarshaller.java new file mode 100644 index 000000000..4de82d7c6 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FrequencyKnownVariantOptionMarshaller.java @@ -0,0 +1,61 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class FrequencyKnownVariantOptionMarshaller extends AbstractOptionMarshaller { + + public static final String REMOVE_KNOWN_VARIANTS_OPTION = "remove-known-variants"; + + public FrequencyKnownVariantOptionMarshaller() { + option = Option.builder() + .optionalArg(true) + .type(Boolean.class) + .argName("true/false") + .desc("Filter out all variants with an entry in dbSNP/ESP/ExAC (regardless of frequency).") + .longOpt(REMOVE_KNOWN_VARIANTS_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + if (values == null) { + //default is not to remove variants with a frequency from a study + //having this triggered from the command line is the same as saying values[0] == true + settingsBuilder.removeKnownVariants(true); + } else { + //but the json/properties file specify true or false + settingsBuilder.removeKnownVariants(Boolean.parseBoolean(values[0])); + } + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FrequencyThresholdOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FrequencyThresholdOptionMarshaller.java new file mode 100644 index 000000000..7b8d22cfd --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FrequencyThresholdOptionMarshaller.java @@ -0,0 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class FrequencyThresholdOptionMarshaller extends AbstractOptionMarshaller { + + public static final String MAX_FREQ_OPTION = "max-freq"; + + public FrequencyThresholdOptionMarshaller() { + option = new Option("F", MAX_FREQ_OPTION, true, "Maximum frequency threshold for variants to be retained. e.g. 100.00 will retain all variants. Default: 100.00"); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.maximumFrequency(Float.parseFloat(values[0])); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FullAnalysisOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FullAnalysisOptionMarshaller.java new file mode 100644 index 000000000..02c858cf5 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/FullAnalysisOptionMarshaller.java @@ -0,0 +1,54 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class FullAnalysisOptionMarshaller extends AbstractOptionMarshaller { + + public static final String RUN_FULL_ANALYSIS_OPTION = "full-analysis"; + + public FullAnalysisOptionMarshaller() { + option = Option.builder() + .hasArg() + .argName("true/false") + .desc("Run the analysis such that all variants are run through all filters. This will take longer, but give more complete results. Default is false") + .longOpt(RUN_FULL_ANALYSIS_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + //default is false + settingsBuilder.runFullAnalysis(Boolean.parseBoolean(values[0])); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/GenesToKeepFilterOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/GenesToKeepFilterOptionMarshaller.java new file mode 100644 index 000000000..2af177a06 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/GenesToKeepFilterOptionMarshaller.java @@ -0,0 +1,86 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.LinkedHashSet; +import java.util.Set; +import java.util.regex.Matcher; +import java.util.regex.Pattern; + +/** + * + * @author Jules Jacobsen + */ +public class GenesToKeepFilterOptionMarshaller extends AbstractOptionMarshaller { + + private static final Logger logger = LoggerFactory.getLogger(SeedGenesOptionMarshaller.class); + + public static final String GENES_TO_KEEP_OPTION = "genes-to-keep"; + + public GenesToKeepFilterOptionMarshaller() { + option = Option.builder() + .hasArgs() + .argName("Entrez geneId") + .valueSeparator(',') + .desc("Comma separated list of seed genes (Entrez gene IDs) for filtering") + .longOpt(GENES_TO_KEEP_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.genesToKeep(parseGenesToKeepList(values)); + } + + private Set parseGenesToKeepList(String[] values) { + + Set returnList = new LinkedHashSet<>(); + + if (values.length == 0) { + return returnList; + } + + Pattern entrezGeneIdPattern = Pattern.compile("[0-9]+"); + + for (String string : values) { + Matcher entrezGeneIdPatternMatcher = entrezGeneIdPattern.matcher(string); + if (entrezGeneIdPatternMatcher.matches()) { + Integer integer = Integer.parseInt(string.trim()); + returnList.add(integer); + } else { + logger.error("Malformed Entrez gene ID input string \"{}\". Term \"{}\" does not match the Entrez gene ID identifier pattern: {}", values, string, entrezGeneIdPattern); + } + } + + return returnList; + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/GeneticIntervalOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/GeneticIntervalOptionMarshaller.java new file mode 100644 index 000000000..32e7ada9f --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/GeneticIntervalOptionMarshaller.java @@ -0,0 +1,60 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +/** + * + * @author Jules Jacobsen + */ +public class GeneticIntervalOptionMarshaller extends AbstractOptionMarshaller { + + private static final Logger logger = LoggerFactory.getLogger(GeneticIntervalOptionMarshaller.class); + + public static final String GENETIC_INTERVAL_OPTION = "restrict-interval"; + + public GeneticIntervalOptionMarshaller() { + option = new Option("R", GENETIC_INTERVAL_OPTION, true, "Restrict to region/interval (e.g., chr2:12345-67890)"); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + if (values == null || values.length == 0 || values[0].isEmpty()) { + //use the default builder value + return; + } + // FIXME: First load Jannovar DB, use JannovarData#refDict, then parse interval! + settingsBuilder.geneticInterval(GeneticInterval.parseString(HG19RefDictBuilder.build(), values[0])); + } + + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/HiPhiveOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/HiPhiveOptionMarshaller.java new file mode 100644 index 000000000..c52dc77ea --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/HiPhiveOptionMarshaller.java @@ -0,0 +1,71 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class HiPhiveOptionMarshaller extends AbstractOptionMarshaller { + + public static final String HIPHIVE_PARAMS_OPTION = "hiphive-params"; + + public HiPhiveOptionMarshaller() { + option = Option.builder("E") + .hasArgs() + .argName("type") + .type(String.class) + .valueSeparator(',') + .desc(String.format("Comma separated list of optional parameters for %s: human, mouse, fish, ppi. " + + "e.g. --%s=human or --%s=human,mouse,ppi", "hiphive", HIPHIVE_PARAMS_OPTION, HIPHIVE_PARAMS_OPTION)) + .longOpt(HIPHIVE_PARAMS_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.hiPhiveParams(parseHiPhiveParams(values)); + } + + private String parseHiPhiveParams(String[] values) { + String hiPhiveParams = ""; + if (values.length == 0) { + return hiPhiveParams; + } + for (String token : values) { + token = token.trim(); + if (hiPhiveParams.equals("")) { + hiPhiveParams = token; + } else { + hiPhiveParams = hiPhiveParams + "," + token; + } + } + return hiPhiveParams; + } +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/HpoIdsOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/HpoIdsOptionMarshaller.java new file mode 100644 index 000000000..28589948e --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/HpoIdsOptionMarshaller.java @@ -0,0 +1,96 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.ArrayList; +import java.util.List; +import java.util.regex.Matcher; +import java.util.regex.Pattern; + +/** + * + * @author Jules Jacobsen + */ +public class HpoIdsOptionMarshaller extends AbstractOptionMarshaller { + + private static final Logger logger = LoggerFactory.getLogger(HpoIdsOptionMarshaller.class); + + public static final String HPO_IDS_OPTION = "hpo-ids"; + + public HpoIdsOptionMarshaller() { + option = Option.builder() + .hasArgs() + .argName("HPO ID") + .valueSeparator(',') + .desc("Comma separated list of HPO IDs for the sample being sequenced e.g. HP:0000407,HP:0009830,HP:0002858") + .longOpt(HPO_IDS_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.hpoIdList(parseHpoStringList(values)); + } + + private List parseHpoStringList(String[] values) { + logger.debug("Parsing HPO values from: {}", values); + + List hpoList = new ArrayList<>(); + + if (values.length == 0) { + return hpoList; + } + + Pattern hpoPattern = Pattern.compile("HP:[0-9]{7}"); + //I've gone for a more verbose splitting and individual token parsing + //instead of doing while hpoMatcher.matches(); hpoList.add(hpoMatcher.group()) + //on the whole input string so that the user has a warning about any invalid HPO ids + for (String token : values) { + token = token.trim(); + if (token.isEmpty()) { + continue; + } + Matcher hpoMatcher = hpoPattern.matcher(token); + if (hpoMatcher.matches()) { /* A well formed HPO term starts with "HP:" and has ten characters. */ + + //ideally we need an HPO class as the second half of the ID is an integer. + //TODO: add Hpo class to exomiser.core - Phenodigm.core already has one. + + hpoList.add(token); + } else { + logger.error("Malformed HPO input string \"{}\". Term \"{}\" does not match the HPO identifier pattern: {}", values, token, hpoPattern); + } + } + + return hpoList; + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/InheritanceModeOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/InheritanceModeOptionMarshaller.java new file mode 100644 index 000000000..e2eb6bd7f --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/InheritanceModeOptionMarshaller.java @@ -0,0 +1,72 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.cli.CommandLineParseError; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +/** + * + * @author Jules Jacobsen + */ +public class InheritanceModeOptionMarshaller extends AbstractOptionMarshaller { + + private static final Logger logger = LoggerFactory.getLogger(InheritanceModeOptionMarshaller.class); + + public static final String MODE_OF_INHERITANCE_OPTION = "inheritance-mode"; + + public InheritanceModeOptionMarshaller() { + option = new Option("I", MODE_OF_INHERITANCE_OPTION, true, "Filter variants for inheritance pattern (AR, AD, X)"); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.modeOfInheritance(parseInheritanceMode(values[0])); + } + + private ModeOfInheritance parseInheritanceMode(String value) { + switch (value.toUpperCase()) { + case "AR": + case "AUTOSOMAL_RECESSIVE": + return ModeOfInheritance.AUTOSOMAL_RECESSIVE; + case "AD": + case "AUTOSOMAL_DOMINANT": + return ModeOfInheritance.AUTOSOMAL_DOMINANT; + case "X": + case "X_RECESSIVE": + return ModeOfInheritance.X_RECESSIVE; + default: + String message = "'" + value + "' is not a valid mode of inheritance. Use one of AUTOSOMAL_RECESSIVE (AR), AUTOSOMAL_DOMINANT (AD) or X_RECESSIVE (X)."; + logger.error(message); + throw new CommandLineParseError(message); + } + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/NumGenesOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/NumGenesOptionMarshaller.java new file mode 100644 index 000000000..d846f75ff --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/NumGenesOptionMarshaller.java @@ -0,0 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class NumGenesOptionMarshaller extends AbstractOptionMarshaller { + + public static final String NUM_GENES_OPTION = "num-genes"; + + public NumGenesOptionMarshaller() { + option = new Option(null, NUM_GENES_OPTION, true, "Number of genes to show in output"); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.numberOfGenesToShow(Integer.parseInt(values[0])); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OptionMarshaller.java new file mode 100644 index 000000000..1522b67ec --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OptionMarshaller.java @@ -0,0 +1,42 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public interface OptionMarshaller { + + String getCommandLineParameter(); + + Option getOption(); + + void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder); +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutFileFormatOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutFileFormatOptionMarshaller.java new file mode 100644 index 000000000..578a01623 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutFileFormatOptionMarshaller.java @@ -0,0 +1,100 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.ArrayList; +import java.util.EnumSet; +import java.util.List; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public class OutFileFormatOptionMarshaller extends AbstractOptionMarshaller { + + private static final Logger logger = LoggerFactory.getLogger(OutFileFormatOptionMarshaller.class); + + public static final String OUT_FILE_FORMAT_OPTION = "out-format"; + + public OutFileFormatOptionMarshaller() { + option = Option.builder("f") + .hasArgs() + .argName("type") + .type(OutputFormat.class) + .valueSeparator(',') + .desc("Comma separated list of format options: HTML, VCF, TAB-GENE or TAB-VARIANT,. Defaults to HTML if not specified. e.g. --out-format=TAB-VARIANT or --out-format=TAB-GENE,TAB-VARIANT,HTML,VCF") + .longOpt(OUT_FILE_FORMAT_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.outputFormats(parseOutputFormat(values)); + } + + private Set parseOutputFormat(String[] values) { + List outputFormats = new ArrayList<>(); + logger.debug("Parsing output options: {}", values); + + for (String outputFormatString : values) { + switch (outputFormatString.trim()) { + case "HTML": + outputFormats.add(OutputFormat.HTML); + break; + case "TSV_GENE": + case "TAB-GENE": + case "TSV-GENE": + outputFormats.add(OutputFormat.TSV_GENE); + break; + case "TSV_VARIANT": + case "TAB-VARIANT": + case "TSV-VARIANT": + outputFormats.add(OutputFormat.TSV_VARIANT); + break; + case "VCF": + outputFormats.add(OutputFormat.VCF); + break; + case "PHENOGRID": + outputFormats.add(OutputFormat.PHENOGRID); + break; + default: + logger.info("{} is not a recognised output format. Please choose one or more of HTML, TAB-GENE, TAB-VARIANT, VCF - defaulting to HTML", outputFormatString); + outputFormats.add(OutputFormat.HTML); + break; + } + } + logger.debug("Setting output formats: {}", outputFormats); + return EnumSet.copyOf(outputFormats); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutFilePrefixOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutFilePrefixOptionMarshaller.java new file mode 100644 index 000000000..0f5f15835 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutFilePrefixOptionMarshaller.java @@ -0,0 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class OutFilePrefixOptionMarshaller extends AbstractOptionMarshaller { + + public static final String OUT_FILE_PREFIX_OPTION = "out-prefix"; + + public OutFilePrefixOptionMarshaller() { + option = new Option("o", OUT_FILE_PREFIX_OPTION, true, "Out file prefix. Will default to vcf-filename-exomiser-results"); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.outputPrefix(values[0]); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshaller.java new file mode 100644 index 000000000..5d084e182 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshaller.java @@ -0,0 +1,60 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class OutputPassOnlyVariantsOptionMarshaller extends AbstractOptionMarshaller { + + public static final String OUTPUT_PASS_VARIANTS_ONLY_OPTION = "output-pass-variants-only"; + + public OutputPassOnlyVariantsOptionMarshaller () { + option = Option.builder() + .optionalArg(true) + .type(Boolean.class) + .argName("true/false") + .desc("Only write out PASS variants in TSV and VCF files.") + .longOpt(OUTPUT_PASS_VARIANTS_ONLY_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + if (values == null) { + //default is to output all variants, regardless of their filtered status. + //having this triggered from the command line is the same as saying values[0] == true + settingsBuilder.outputPassVariantsOnly(true); + } else { + //but the json/properties file specify true or false + settingsBuilder.outputPassVariantsOnly(Boolean.parseBoolean(values[0])); + } + } +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshaller.java new file mode 100644 index 000000000..d9c2b89ba --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshaller.java @@ -0,0 +1,62 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class PathogenicityFilterCutOffOptionMarshaller extends AbstractOptionMarshaller { + + public static final String KEEP_NON_PATHOGENIC_VARIANTS_OPTION = "keep-non-pathogenic"; + + public PathogenicityFilterCutOffOptionMarshaller() { + option = Option.builder("P") + .optionalArg(true) + .type(Boolean.class) + .argName("true/false") + .desc("Keep the predicted non-pathogenic variants that are normally removed by default. " + + "These are defined as syonymous, intergenic, intronic, upstream, downstream or intronic ncRNA variants. " + + "This setting can optionally take a true/false argument. Not including the argument is equivalent to specifying 'false'.") + .longOpt(KEEP_NON_PATHOGENIC_VARIANTS_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + if (values == null) { + //default is to remove the non-pathogenic variants, so this should be false + settingsBuilder.keepNonPathogenic(true); + } else { + //but the json/properties file specifies true or false, hence the optionArg + settingsBuilder.keepNonPathogenic(Boolean.parseBoolean(values[0])); + } + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PedFileOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PedFileOptionMarshaller.java new file mode 100644 index 000000000..1779c38e7 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PedFileOptionMarshaller.java @@ -0,0 +1,55 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +import java.nio.file.Paths; + +/** + * + * @author Jules Jacobsen + */ +public class PedFileOptionMarshaller extends AbstractOptionMarshaller { + + public static final String PED_OPTION = "ped"; + + public PedFileOptionMarshaller() { + option = Option.builder("p") + .argName("file") + .hasArg() + .desc("Path to pedigree (ped) file. Required if the vcf file is for a family.") + .longOpt(PED_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.pedFilePath(Paths.get(values[0])); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PrioritiserOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PrioritiserOptionMarshaller.java new file mode 100644 index 000000000..ee4fcac5e --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/PrioritiserOptionMarshaller.java @@ -0,0 +1,125 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.cli.CommandLineParseError; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.util.ArrayList; +import java.util.LinkedHashMap; +import java.util.List; +import java.util.Map; + +/** + * + * @author Jules Jacobsen + */ +public class PrioritiserOptionMarshaller extends AbstractOptionMarshaller { + + public static final String PRIORITISER_OPTION = "prioritiser"; //values for this are handled by PriorityType + + private final Map prioritiserCliValues = new LinkedHashMap<>(); + + public PrioritiserOptionMarshaller() { + + prioritiserCliValues.put("hiphive", PriorityType.HIPHIVE_PRIORITY); + prioritiserCliValues.put("phenix", PriorityType.PHENIX_PRIORITY); + prioritiserCliValues.put("phive", PriorityType.PHIVE_PRIORITY); + prioritiserCliValues.put("exomewalker", PriorityType.EXOMEWALKER_PRIORITY); + prioritiserCliValues.put("omim", PriorityType.OMIM_PRIORITY); + //'none' is the default + prioritiserCliValues.put("none", PriorityType.NONE); + + List commandLineValues = new ArrayList<>(prioritiserCliValues.keySet()); + + option = Option.builder() + .hasArg() + .argName("name") + .valueSeparator() + .desc(buildPrioritiserDescription(PRIORITISER_OPTION, commandLineValues)) + .longOpt(PRIORITISER_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + String value = values[0].toLowerCase(); + PriorityType priorityType = prioritiserCliValues.get(value); + if (priorityType == null) { + throw new CommandLineParseError(buildErrorMessage(value)); + } + settingsBuilder.usePrioritiser(priorityType); + } + + /** + * There is a lot of messing about needed to get the Prioritiser option + * description sorted, but this will now automatically change to reflect + * changes in any names or types which are added to the + * {@link PriorityType} + * + * @param prioritiserLongOpt + * @return + */ + private String buildPrioritiserDescription(String prioritiserLongOpt, List commandLineValues) { + //Build up the description this should look like this: + //"Name of the PRIORITISER_OPTION used to score the genes. + // Can be one of: inheritance-mode, phenomizer or dynamic-phenodigm. + // e.g. --PRIORITISER_OPTION=dynamic-phenodigm" + + StringBuilder priorityOptionDescriptionBuilder = new StringBuilder("Name of the prioritiser used to score the genes. Can be one of: "); + + int numPriorityTypes = commandLineValues.size(); + int lastType = numPriorityTypes - 1; + int secondLastType = numPriorityTypes - 2; + + for (int i = 0; i < numPriorityTypes; i++) { + String cliValue = commandLineValues.get(i); + if (i == lastType) { + priorityOptionDescriptionBuilder.append(cliValue) + .append(". e.g. --").append(prioritiserLongOpt) + .append("=") + .append(cliValue); + } else if (i == secondLastType) { + priorityOptionDescriptionBuilder.append(cliValue).append(" or "); + } else { + priorityOptionDescriptionBuilder.append(cliValue).append(", "); + } + } + + return priorityOptionDescriptionBuilder.toString(); + } + + private String buildErrorMessage(String value) { + StringBuilder errorMessage = new StringBuilder(); + errorMessage.append(String.format("Invalid %s option: '%s'. ", PRIORITISER_OPTION, value)); + errorMessage.append("Valid options are: "); + errorMessage.append(prioritiserCliValues.keySet()); + return errorMessage.toString(); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/ProbandSampleNameOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/ProbandSampleNameOptionMarshaller.java new file mode 100644 index 000000000..baf4fc419 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/ProbandSampleNameOptionMarshaller.java @@ -0,0 +1,46 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings; + +/** + * @author Jules Jacobsen + */ +public class ProbandSampleNameOptionMarshaller extends AbstractOptionMarshaller { + + public static final String PROBAND_SAMPLE_NAME_OPTION = "proband"; + + public ProbandSampleNameOptionMarshaller() { + option = Option.builder() + .hasArg() + .desc("Sample name of the proband. This should be present in both the ped and vcf files. Required if the vcf file is for a family.") + .longOpt(PROBAND_SAMPLE_NAME_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, Settings.SettingsBuilder settingsBuilder) { + settingsBuilder.probandSampleName(values[0]); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/QualityThresholdOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/QualityThresholdOptionMarshaller.java new file mode 100644 index 000000000..3ebc42b1b --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/QualityThresholdOptionMarshaller.java @@ -0,0 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class QualityThresholdOptionMarshaller extends AbstractOptionMarshaller { + + public static final String MIN_QUAL_OPTION = "min-qual"; + + public QualityThresholdOptionMarshaller() { + option = new Option("Q", MIN_QUAL_OPTION, true, "Mimimum quality threshold for variants as specifed in VCF 'QUAL' column. Default: 0"); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.minimumQuality(Float.parseFloat(values[0])); + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/SeedGenesOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/SeedGenesOptionMarshaller.java new file mode 100644 index 000000000..b615ab9e6 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/SeedGenesOptionMarshaller.java @@ -0,0 +1,90 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.ArrayList; +import java.util.List; +import java.util.regex.Matcher; +import java.util.regex.Pattern; + +/** + * + * @author Jules Jacobsen + */ +public class SeedGenesOptionMarshaller extends AbstractOptionMarshaller { + + private static final Logger logger = LoggerFactory.getLogger(SeedGenesOptionMarshaller.class); + + public static final String SEED_GENES_OPTION = "seed-genes"; + + public SeedGenesOptionMarshaller() { + option = Option.builder("S") + .hasArgs() + .argName("Entrez geneId") + .valueSeparator(',') + .desc("Comma separated list of seed genes (Entrez gene IDs) for random walk") + .longOpt(SEED_GENES_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + settingsBuilder.seedGeneList(parseEntrezSeedGeneList(values)); + } + + private List parseEntrezSeedGeneList(String[] values) { + + List returnList = new ArrayList<>(); + + if (values.length == 0) { + return returnList; + } + + Pattern entrezGeneIdPattern = Pattern.compile("[0-9]+"); + + for (String string : values) { + if (string.isEmpty()) { + continue; + } + String trimmedString = string.trim(); + Matcher entrezGeneIdPatternMatcher = entrezGeneIdPattern.matcher(trimmedString); + if (entrezGeneIdPatternMatcher.matches()) { + Integer integer = Integer.parseInt(trimmedString); + returnList.add(integer); + } else { + logger.error("Malformed Entrez gene ID input string \"{}\". Term \"{}\" does not match the Entrez gene ID identifier pattern: {}", values, string, entrezGeneIdPattern); + } + } + + return returnList; + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/SettingsFileOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/SettingsFileOptionMarshaller.java new file mode 100644 index 000000000..12ff85727 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/SettingsFileOptionMarshaller.java @@ -0,0 +1,53 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class SettingsFileOptionMarshaller extends AbstractOptionMarshaller { + + public static final String SETTINGS_FILE_OPTION = "settings-file"; + + public SettingsFileOptionMarshaller() { + option = Option.builder() + .argName("file") + .hasArg() + .desc("Path to settings file. Any settings specified in the file will be overidden by parameters added on the command-line.") + .longOpt(SETTINGS_FILE_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + //no direct ExomiserSettings value to set + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/TargetFilterOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/TargetFilterOptionMarshaller.java new file mode 100644 index 000000000..57f8a1620 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/TargetFilterOptionMarshaller.java @@ -0,0 +1,62 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +/** + * + * @author Jules Jacobsen + */ +public class TargetFilterOptionMarshaller extends AbstractOptionMarshaller { + + public static final String KEEP_OFF_TARGET_OPTION = "keep-off-target"; + + public TargetFilterOptionMarshaller() { + option = Option.builder("T") + .optionalArg(true) + .type(Boolean.class) + .argName("true/false") + .desc("Keep the off-target variants that are normally removed by default. " + + "These are defined as intergenic, intronic, upstream, downstream or intronic ncRNA variants. " + + "This setting can optionally take a true/false argument. Not including the argument is equivalent to specifying 'true'.") + .longOpt(KEEP_OFF_TARGET_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + //the default should be to remove the off-target variants + if (values == null) { + settingsBuilder.keepOffTargetVariants(true); + } else { + //but the json/properties file specifies true or false, hence the optionArg + settingsBuilder.keepOffTargetVariants(Boolean.parseBoolean(values[0])); + } + } + +} diff --git a/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/VcfFileOptionMarshaller.java b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/VcfFileOptionMarshaller.java new file mode 100644 index 000000000..0c4eb04e3 --- /dev/null +++ b/exomiser-cli/src/main/java/org/monarchinitiative/exomiser/cli/options/VcfFileOptionMarshaller.java @@ -0,0 +1,59 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +import java.nio.file.Paths; + +/** + * + * @author Jules Jacobsen + */ +public class VcfFileOptionMarshaller extends AbstractOptionMarshaller { + + public static final String VCF_OPTION = "vcf"; + + public VcfFileOptionMarshaller() { + option = Option.builder("v") + .argName("file") + .hasArg() + .desc("Path to VCF file with mutations to be analyzed. Can be either for an individual or a family.") + .longOpt(VCF_OPTION) + .build(); + } + + @Override + public void applyValuesToSettingsBuilder(String[] values, SettingsBuilder settingsBuilder) { + if (values[0].isEmpty()) { + settingsBuilder.vcfFilePath(null); + } else { + settingsBuilder.vcfFilePath(Paths.get(values[0])); + } + } + +} diff --git a/exomiser-cli/src/main/resources/application.properties b/exomiser-cli/src/main/resources/application.properties index f00e94099..53e069429 100644 --- a/exomiser-cli/src/main/resources/application.properties +++ b/exomiser-cli/src/main/resources/application.properties @@ -1,53 +1,35 @@ #root path where data is to be downloaded and worked on #it is assumed that all the files required by exomiser listed in this properties file -#will be found in the dataDir directory. -dataDir=data - -#Full path to the H2 database file (leave blank to use the default location) -h2Path= -#toggle to switch between using the embedded H2 and a external PostgreSQL database -usePostgreSQL=false -#these are the necessary credentials for connecting to your PostgreSQL server -dbuser= -password= -server= -database= -port= -#set the number of database connections you want this process to use - it will need a minimum of 2 -maxConnections=5 - -#location of CADD Tabix files. -#These can be downloaded from http://cadd.gs.washington.edu/download - v1.3 has been tested. -#You will require the tsv.gz and tsv.gz.tbi file pairs. -#replace the empty placeholder files in the exomiser/data directory with the real -#ones or specify the full system path here (leave blank to use the default location) -#caddSnvPath=full/path/to/whole_genome_SNVs.tsv.gz -#caddInDelPath=full/path/to/InDels.tsv.gz -caddSnvPath= -caddInDelPath= +#will be found in the data directory unless specifically overridden here. +exomiser.data-directory=data + +#Full path to the directory containing the exomiser H2 database file (leave blank to use the default location) +#exomiser.h2.directory= +#Name of the transcript data file you want to use - e.g hg19_ucsc or hg19_ensembl. Will default to UCSC if not specified. +#This should be located in the ${exomiser.data-directory}. +#exomiser.transcript-data-file-name=hg19_ucsc.ser +#exomiser.transcript-data-file-name=hg19_ensembl.ser +#exomiser.transcript-data-file-name=hg19_refseq.ser + +#location of CADD/REMM Tabix files - you will need these for analysis of non-coding variants. +#CADD can be downloaded from http://cadd.gs.washington.edu/download - v1.3 has been tested. +#REMM can be downloaded from ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/remm +#local frequencies are required to be normalised in the same manner as the input VCF. +# +#You will require the tsv.gz and tsv.gz.tbi (tabix) file pairs. +#Un-comment and add the full path to the relevant tsv.gz files if you want to enable these. +#exomiser.cadd-snv-path=full/path/to/whole_genome_SNVs.tsv.gz +#exomiser.cadd-in-del-path=full/path/to/InDels.tsv.gz +#exomiser.remm-path=full/path/to/remmData.tsv.gz +#exomiser.local-frequency-path=full/path/to/local-frequencies.tsv.gz + +#String random walk data file +#exomiser.random-walk-file-name=full/path/to/rw_string_9_05.gz +#exomiser.random-walk-index-file-name=full/path/to/rw_string_9_05_id2index.gz #If you're running exomiser in batch mode there might be some performance benefit #if you enable caching. The mem option will continue to store data in memory *without* -#limit - this means for really long-running batch jobs you may run out of memory. +#limit - this means for really long-running batch jobs and/or whole genomes you may run out of memory. #If this is likely choose the ehcache option and configure ehcache.xml to your requirements #none/mem/ehcache -cache=none - -################################################################### -# Don't touch anything below here unless you want to break things # -################################################################### - -#name of ucsc.ser file created from Jannovar for defining known exon locations -ucscFileName=ucsc_hg19.ser - -remmPath=remmData.tsv.gz - -randomWalkFileName=rw_string_9_05.gz - -randomWalkIndexFileName=rw_string_9_05_id2index.gz -#phenix directory -phenomizerDataDir=phenix - -hpoOntologyFile=hp.obo - -hpoAnnotationFile=phenotype_annotation.tab \ No newline at end of file +#exomiser.cache=ehcache \ No newline at end of file diff --git a/exomiser-cli/src/main/resources/distribution/test-batchFiles.txt b/exomiser-cli/src/main/resources/distribution/test-batchFiles.txt deleted file mode 100644 index 8166d716e..000000000 --- a/exomiser-cli/src/main/resources/distribution/test-batchFiles.txt +++ /dev/null @@ -1,4 +0,0 @@ -test-hiphive.settings -test-phive.settings -test-walker.settings -test-phenix.settings \ No newline at end of file diff --git a/exomiser-cli/src/main/resources/ehcache.xml b/exomiser-cli/src/main/resources/ehcache.xml index a7e656066..e7dd2bf6a 100644 --- a/exomiser-cli/src/main/resources/ehcache.xml +++ b/exomiser-cli/src/main/resources/ehcache.xml @@ -38,6 +38,9 @@ + + + diff --git a/exomiser-cli/src/main/resources/distribution/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.yml b/exomiser-cli/src/main/resources/examples/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.yml similarity index 96% rename from exomiser-cli/src/main/resources/distribution/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.yml rename to exomiser-cli/src/main/resources/examples/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.yml index 3a2baceda..2f77b81d2 100644 --- a/exomiser-cli/src/main/resources/distribution/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.yml +++ b/exomiser-cli/src/main/resources/examples/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.yml @@ -3,14 +3,12 @@ # your own set-up. --- analysis: - vcf: data/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.vcf + vcf: examples/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.vcf ped: # AUTOSOMAL_DOMINANT, AUTOSOMAL_RECESSIVE, X_RECESSIVE or UNDEFINED modeOfInheritance: AUTOSOMAL_RECESSIVE #FULL, SPARSE or PASS_ONLY - analysisMode: PASS_ONLY - #RAW_SCORE or RANK_BASED - geneScoreMode: RAW_SCORE + analysisMode: PASS_ONLY hpoIds: ['HP:0000250', 'HP:0000280', 'HP:0000365', @@ -59,6 +57,7 @@ analysis: #all steps are optional steps: [ #intervalFilter: {interval: 'chr10:123256200-123256300'}, + #failedVariantFilter: {}, #geneIdFilter: {geneIds: [12345, 34567, 98765]}, hiPhivePrioritiser: {}, #running the prioritiser followed by a priorityScoreFilter will remove genes diff --git a/exomiser-cli/src/main/resources/distribution/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml b/exomiser-cli/src/main/resources/examples/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml similarity index 96% rename from exomiser-cli/src/main/resources/distribution/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml rename to exomiser-cli/src/main/resources/examples/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml index 8cd3ca85e..a9c0174ec 100644 --- a/exomiser-cli/src/main/resources/distribution/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml +++ b/exomiser-cli/src/main/resources/examples/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.yml @@ -3,14 +3,12 @@ # your own set-up. --- analysis: - vcf: data/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.vcf.gz + vcf: examples/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.vcf.gz ped: # AUTOSOMAL_DOMINANT, AUTOSOMAL_RECESSIVE, X_RECESSIVE or UNDEFINED modeOfInheritance: AUTOSOMAL_RECESSIVE #FULL, SPARSE or PASS_ONLY - analysisMode: PASS_ONLY - #RAW_SCORE or RANK_BASED - geneScoreMode: RAW_SCORE + analysisMode: PASS_ONLY hpoIds: ['HP:0000982', 'HP:0001036', 'HP:0001367', @@ -48,6 +46,7 @@ analysis: #all steps are optional steps: [ #intervalFilter: {interval: 'chr10:123256200-123256300'}, + #failedVariantFilter: {}, #geneIdFilter: {geneIds: [12345, 34567, 98765]}, hiPhivePrioritiser: {}, #running the prioritiser followed by a priorityScoreFilter will remove genes diff --git a/exomiser-cli/src/main/resources/distribution/template.settings b/exomiser-cli/src/main/resources/examples/template.settings similarity index 99% rename from exomiser-cli/src/main/resources/distribution/template.settings rename to exomiser-cli/src/main/resources/examples/template.settings index b05043b7a..ea5d761a1 100644 --- a/exomiser-cli/src/main/resources/distribution/template.settings +++ b/exomiser-cli/src/main/resources/examples/template.settings @@ -10,6 +10,7 @@ vcf= #SAMPLE DATA OPTIONS ped= +proband= #ANALYSIS MODE OPTIONS full-analysis=false diff --git a/exomiser-cli/src/main/resources/distribution/test-analysis-batch.txt b/exomiser-cli/src/main/resources/examples/test-analysis-batch.txt similarity index 100% rename from exomiser-cli/src/main/resources/distribution/test-analysis-batch.txt rename to exomiser-cli/src/main/resources/examples/test-analysis-batch.txt diff --git a/exomiser-cli/src/main/resources/distribution/test-analysis-exome.yml b/exomiser-cli/src/main/resources/examples/test-analysis-exome.yml similarity index 97% rename from exomiser-cli/src/main/resources/distribution/test-analysis-exome.yml rename to exomiser-cli/src/main/resources/examples/test-analysis-exome.yml index eb33d6a2b..7185aa8db 100644 --- a/exomiser-cli/src/main/resources/distribution/test-analysis-exome.yml +++ b/exomiser-cli/src/main/resources/examples/test-analysis-exome.yml @@ -3,14 +3,13 @@ # your own set-up. --- analysis: - vcf: data/Pfeiffer.vcf + vcf: examples/Pfeiffer.vcf ped: + proband: # AUTOSOMAL_DOMINANT, AUTOSOMAL_RECESSIVE, X_RECESSIVE or UNDEFINED modeOfInheritance: UNDEFINED #FULL, SPARSE or PASS_ONLY - analysisMode: SPARSE - #RAW_SCORE or RANK_BASED - geneScoreMode: RAW_SCORE + analysisMode: SPARSE hpoIds: ['HP:0001156', 'HP:0001363', 'HP:0011304', 'HP:0010055'] #Possible frequencySources: #Thousand Genomes project http://www.1000genomes.org/ @@ -39,6 +38,7 @@ analysis: steps: [ #intervalFilter: {interval: 'chr10:123256200-123256300'}, #geneIdFilter: {geneIds: [12345, 34567, 98765]}, + #failedVariantFilter: {}, #qualityFilter: {minQuality: 50.0}, variantEffectFilter: {remove: [UPSTREAM_GENE_VARIANT, INTERGENIC_VARIANT, diff --git a/exomiser-cli/src/main/resources/distribution/test-analysis-genome.yml b/exomiser-cli/src/main/resources/examples/test-analysis-genome.yml similarity index 97% rename from exomiser-cli/src/main/resources/distribution/test-analysis-genome.yml rename to exomiser-cli/src/main/resources/examples/test-analysis-genome.yml index 47ab9e341..7ab33f29a 100644 --- a/exomiser-cli/src/main/resources/distribution/test-analysis-genome.yml +++ b/exomiser-cli/src/main/resources/examples/test-analysis-genome.yml @@ -3,14 +3,13 @@ # your own set-up. --- analysis: - vcf: data/Pfeiffer.vcf + vcf: examples/Pfeiffer.vcf ped: + proband: # AUTOSOMAL_DOMINANT, AUTOSOMAL_RECESSIVE, X_RECESSIVE or UNDEFINED modeOfInheritance: UNDEFINED #FULL, SPARSE or PASS_ONLY - analysisMode: PASS_ONLY - #RAW_SCORE or RANK_BASED - geneScoreMode: RAW_SCORE + analysisMode: PASS_ONLY hpoIds: ['HP:0001156', 'HP:0001363', 'HP:0011304', 'HP:0010055'] #Possible frequencySources: #Thousand Genomes project http://www.1000genomes.org/ @@ -38,7 +37,8 @@ analysis: #this is the recommended order for a genome-sized analysis. #all steps are optional steps: [ - #intervalFilter: {interval: 'chr10:123256200-123256300'}, + #intervalFilter: {interval: 'chr10:123256200-123256300'}, + #failedVariantFilter: {}, #geneIdFilter: {geneIds: [12345, 34567, 98765]}, hiPhivePrioritiser: {}, #running the prioritiser followed by a priorityScoreFilter will remove genes diff --git a/exomiser-cli/src/main/resources/examples/test-batchFiles.txt b/exomiser-cli/src/main/resources/examples/test-batchFiles.txt new file mode 100644 index 000000000..d700d527e --- /dev/null +++ b/exomiser-cli/src/main/resources/examples/test-batchFiles.txt @@ -0,0 +1,5 @@ +test-hiphive.settings +test-phive.settings +test-walker.settings +test-phenix.settings +test-multisample.settings \ No newline at end of file diff --git a/exomiser-cli/src/main/resources/distribution/test-hiphive.settings b/exomiser-cli/src/main/resources/examples/test-hiphive.settings similarity index 98% rename from exomiser-cli/src/main/resources/distribution/test-hiphive.settings rename to exomiser-cli/src/main/resources/examples/test-hiphive.settings index fa8c20f80..5537286c6 100644 --- a/exomiser-cli/src/main/resources/distribution/test-hiphive.settings +++ b/exomiser-cli/src/main/resources/examples/test-hiphive.settings @@ -6,7 +6,7 @@ #for some reason. #REQUIRED OPTIONS - these need to be filled in either here or on the command-line. -vcf=data/Pfeiffer.vcf +vcf=examples/Pfeiffer.vcf #SAMPLE DATA OPTIONS ped= diff --git a/exomiser-cli/src/main/resources/distribution/test-multisample.settings b/exomiser-cli/src/main/resources/examples/test-multisample.settings similarity index 95% rename from exomiser-cli/src/main/resources/distribution/test-multisample.settings rename to exomiser-cli/src/main/resources/examples/test-multisample.settings index 2ed41768f..208ee8687 100644 --- a/exomiser-cli/src/main/resources/distribution/test-multisample.settings +++ b/exomiser-cli/src/main/resources/examples/test-multisample.settings @@ -10,6 +10,7 @@ vcf=data/Pfeiffer-quartet.vcf #SAMPLE DATA OPTIONS ped=data/Pfeiffer-quartet.ped +proband=ISDBM322017 #FILTER OPTIONS max-freq=1.0 @@ -38,6 +39,6 @@ num-genes=0 # according to the out-format option. If unspecified this will default to the following: # {exomiserDir}/results/input-vcf-name-exomiser-results.html # alternatively, specify a fully qualifed path only. e.g. /users/jules/exomes/analysis -out-prefixe= +out-prefix=results/Pfeiffer-multisample-hiphive #out-format options: HTML, VCF, TSV-VARIANT, TSV-GENE (default: HTML) out-format=HTML, VCF, TSV-VARIANT, TSV-GENE diff --git a/exomiser-cli/src/main/resources/examples/test-multisample.yml b/exomiser-cli/src/main/resources/examples/test-multisample.yml new file mode 100644 index 000000000..5955b4146 --- /dev/null +++ b/exomiser-cli/src/main/resources/examples/test-multisample.yml @@ -0,0 +1,80 @@ +## Exomiser Analysis Template for multi-sample VCF files +# These are all the possible options for running exomiser. Use this as a template for +# your own set-up. +analysis: + vcf: examples/Pfeiffer-quartet.vcf.gz + ped: examples/Pfeiffer-quartet.ped + proband: ISDBM322017 + # AUTOSOMAL_DOMINANT, AUTOSOMAL_RECESSIVE, X_RECESSIVE or UNDEFINED + modeOfInheritance: AUTOSOMAL_DOMINANT + #FULL, SPARSE or PASS_ONLY + analysisMode: SPARSE + #RAW_SCORE or RANK_BASED + geneScoreMode: RAW_SCORE + hpoIds: ['HP:0001156', 'HP:0001363', 'HP:0011304', 'HP:0010055'] + #Possible frequencySources: + #Thousand Genomes project http://www.1000genomes.org/ + # THOUSAND_GENOMES, + #ESP project http://evs.gs.washington.edu/EVS/ + # ESP_AFRICAN_AMERICAN, ESP_EUROPEAN_AMERICAN, ESP_ALL, + #ExAC project http://exac.broadinstitute.org/about + # EXAC_AFRICAN_INC_AFRICAN_AMERICAN, EXAC_AMERICAN, + # EXAC_SOUTH_ASIAN, EXAC_EAST_ASIAN, + # EXAC_FINNISH, EXAC_NON_FINNISH_EUROPEAN, + # EXAC_OTHER + frequencySources: [ + THOUSAND_GENOMES, + ESP_AFRICAN_AMERICAN, ESP_EUROPEAN_AMERICAN, ESP_ALL, + EXAC_AFRICAN_INC_AFRICAN_AMERICAN, EXAC_AMERICAN, + EXAC_SOUTH_ASIAN, EXAC_EAST_ASIAN, + EXAC_FINNISH, EXAC_NON_FINNISH_EUROPEAN, + EXAC_OTHER + ] + #Possible pathogenicitySources: POLYPHEN, MUTATION_TASTER, SIFT, CADD, REMM + #*WARNING* if you enable CADD, ensure that you have downloaded and installed the CADD tabix files + #and updated their location in the application.properties. Exomiser will not run without this. + pathogenicitySources: [POLYPHEN, MUTATION_TASTER, SIFT] + #this is the standard exomiser order. + #all steps are optional + steps: [ + #intervalFilter: {interval: 'chr10:123256200-123256300'}, + #geneIdFilter: {geneIds: [12345, 34567, 98765]}, + #failedVariantFilter: {}, + #qualityFilter: {minQuality: 50.0}, + variantEffectFilter: {remove: [UPSTREAM_GENE_VARIANT, + INTERGENIC_VARIANT, + REGULATORY_REGION_VARIANT, + CODING_TRANSCRIPT_INTRON_VARIANT, + NON_CODING_TRANSCRIPT_INTRON_VARIANT, + SYNONYMOUS_VARIANT, + DOWNSTREAM_GENE_VARIANT, + SPLICE_REGION_VARIANT]}, + #knownVariantFilter: {}, #removes variants represented in the database + frequencyFilter: {maxFrequency: 0.01}, + pathogenicityFilter: {keepNonPathogenic: false}, + #inheritanceFilter and omimPrioritiser should always run AFTER all other filters have completed + #they will analyse genes according to the specified modeOfInheritance above- UNDEFINED will not be analysed. + inheritanceFilter: {}, + #omimPrioritiser isn't mandatory. + omimPrioritiser: {}, + #priorityScoreFilter: {minPriorityScore: 0.4}, + #Other prioritisers: Only combine omimPrioritiser with one of these. + #Don't include any if you only want to filter the variants. + hiPhivePrioritiser: {}, + # or run hiPhive in benchmarking mode: + #hiPhivePrioritiser: {runParams: 'mouse'}, + #phivePrioritiser: {} + #phenixPrioritiser: {} + #exomeWalkerPrioritiser: {seedGeneIds: [11111, 22222, 33333]} + ] +outputOptions: + outputPassVariantsOnly: false + #numGenes options: 0 = all or specify a limit e.g. 500 for the first 500 results + numGenes: 50 + #outputPrefix options: specify the path/filename without an extension and this will be added + # according to the outputFormats option. If unspecified this will default to the following: + # {exomiserDir}/results/input-vcf-name-exomiser-results.html + # alternatively, specify a fully qualifed path only. e.g. /users/jules/exomes/analysis + outputPrefix: results/Pfeiffer-quartet-hiphive-exome-SPARSE + #out-format options: HTML, TSV-GENE, TSV-VARIANT, VCF (default: HTML) + outputFormats: [TSV-GENE, TSV-VARIANT, VCF, HTML] diff --git a/exomiser-cli/src/main/resources/distribution/test-phenix.settings b/exomiser-cli/src/main/resources/examples/test-phenix.settings similarity index 98% rename from exomiser-cli/src/main/resources/distribution/test-phenix.settings rename to exomiser-cli/src/main/resources/examples/test-phenix.settings index c47c155d9..3b6930e08 100644 --- a/exomiser-cli/src/main/resources/distribution/test-phenix.settings +++ b/exomiser-cli/src/main/resources/examples/test-phenix.settings @@ -6,7 +6,7 @@ #for some reason. #REQUIRED OPTIONS - these need to be filled in either here or on the command-line. -vcf=data/Pfeiffer.vcf +vcf=examples/Pfeiffer.vcf #SAMPLE DATA OPTIONS ped= diff --git a/exomiser-cli/src/main/resources/distribution/test-phive.settings b/exomiser-cli/src/main/resources/examples/test-phive.settings similarity index 98% rename from exomiser-cli/src/main/resources/distribution/test-phive.settings rename to exomiser-cli/src/main/resources/examples/test-phive.settings index d4fdf07c0..43b907ce1 100644 --- a/exomiser-cli/src/main/resources/distribution/test-phive.settings +++ b/exomiser-cli/src/main/resources/examples/test-phive.settings @@ -6,7 +6,7 @@ #for some reason. #REQUIRED OPTIONS - these need to be filled in either here or on the command-line. -vcf=data/Pfeiffer.vcf +vcf=examples/Pfeiffer.vcf #SAMPLE DATA OPTIONS ped= diff --git a/exomiser-cli/src/main/resources/distribution/test-walker.settings b/exomiser-cli/src/main/resources/examples/test-walker.settings similarity index 98% rename from exomiser-cli/src/main/resources/distribution/test-walker.settings rename to exomiser-cli/src/main/resources/examples/test-walker.settings index 4a4772feb..6e7c0ad22 100644 --- a/exomiser-cli/src/main/resources/distribution/test-walker.settings +++ b/exomiser-cli/src/main/resources/examples/test-walker.settings @@ -6,7 +6,7 @@ #for some reason. #REQUIRED OPTIONS - these need to be filled in either here or on the command-line. -vcf=data/Pfeiffer.vcf +vcf=examples/Pfeiffer.vcf #SAMPLE DATA OPTIONS ped= diff --git a/exomiser-cli/src/main/resources/distribution/test.settings b/exomiser-cli/src/main/resources/examples/test.settings similarity index 97% rename from exomiser-cli/src/main/resources/distribution/test.settings rename to exomiser-cli/src/main/resources/examples/test.settings index a46240060..3f4d5bc59 100644 --- a/exomiser-cli/src/main/resources/distribution/test.settings +++ b/exomiser-cli/src/main/resources/examples/test.settings @@ -6,10 +6,11 @@ #for some reason. #REQUIRED OPTIONS - these need to be filled in either here or on the command-line. -vcf=data/Pfeiffer.vcf +vcf=examples/Pfeiffer.vcf #SAMPLE DATA OPTIONS ped= +proband= #FILTER OPTIONS max-freq=1.0 diff --git a/exomiser-cli/src/main/resources/logback.groovy b/exomiser-cli/src/main/resources/logback.groovy index e4f867a0f..b3af958f3 100644 --- a/exomiser-cli/src/main/resources/logback.groovy +++ b/exomiser-cli/src/main/resources/logback.groovy @@ -13,7 +13,7 @@ appender("CONSOLE", ConsoleAppender) { } } -logger("de.charite.compbio.exomiser", INFO) +logger("org.monarchinitiative.exomiser", INFO) logger("org.thymeleaf", ERROR) root(INFO, ["CONSOLE", "FILE"]) \ No newline at end of file diff --git a/exomiser-cli/src/main/resources/vcf/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.vcf b/exomiser-cli/src/main/resources/vcf/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.vcf new file mode 100644 index 000000000..cae32d73f --- /dev/null +++ b/exomiser-cli/src/main/resources/vcf/NA19722_252900_AR_SGSH_1_NONSYNONYMOUS.vcf @@ -0,0 +1,35260 @@ +##fileformat=VCFv4.1 +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##ALT= +##FORMAT= +##FORMAT= +##FORMAT= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##reference=GRCh37 +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA19722 +22 17072483 rs2236639 A G 100 PASS AA=N;AC=2;AF=0.82;AFR_AF=0.90;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9628;ERATE=0.0222;EUR_AF=0.90;LDAF=0.8102;RSQ=0.9279;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.41,-0.02 +22 17073066 rs5747988 A G 100 PASS AA=N;AC=2;AF=0.85;AFR_AF=0.93;AMR_AF=0.85;AN=2;ASN_AF=0.68;AVGPOST=0.9937;ERATE=0.0006;EUR_AF=0.93;LDAF=0.8514;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-2.97,-0.46,-0.18 +22 17265124 rs5748623 A C 100 PASS AA=.;AC=1;AF=0.38;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.28;AVGPOST=0.7034;ERATE=0.0184;EUR_AF=0.42;LDAF=0.4240;RSQ=0.5606;SNPSOURCE=EXOME;THETA=0.0079;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +22 17446991 rs4819925 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.97;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8117;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 17586471 rs2241046 C T 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.92;AMR_AF=0.83;AN=2;ASN_AF=0.82;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8303;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 17601466 rs75243280 T C 100 PASS AA=t;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.28;AVGPOST=0.8956;ERATE=0.0094;EUR_AF=0.28;LDAF=0.2778;RSQ=0.7905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +22 17662679 rs41282461 C T 100 PASS AA=c;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.32;LDAF=0.2164;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 17662699 rs58754958 A G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.21;AMR_AF=0.24;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.33;LDAF=0.2123;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 17662793 rs7289170 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.24;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2171;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 17662917 rs3764846 G C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.24;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2148;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 17688213 rs77656474 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0327;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 17690409 rs362129 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.09;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.49;LDAF=0.3166;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 18111431 rs7751 T C 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.64;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3340;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 18178859 rs2257083 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.93;AMR_AF=0.84;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8789;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 18209613 rs4488761 A G 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.59;AMR_AF=0.64;AN=2;ASN_AF=0.93;AVGPOST=0.9941;ERATE=0.0032;EUR_AF=0.52;LDAF=0.6609;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 18222263 rs181390 A G 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.64;LDAF=0.7417;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 18226521 rs738094 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.22;AMR_AF=0.61;AN=2;ASN_AF=0.79;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.57;LDAF=0.5578;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 18226528 rs2072393 G A 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.02;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0649;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 18226612 rs2072392 A G 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.02;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0603;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 18226764 rs8190315 T C 100 PASS AA=t;AC=1;AF=0.06;AFR_AF=0.08;AMR_AF=0.02;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0567;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 18273463 rs62238879 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.16;AN=2;ASN_AF=0.04;AVGPOST=0.9955;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1185;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 18274092 rs451548 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.33;AMR_AF=0.26;AN=2;ASN_AF=0.16;AVGPOST=0.9840;ERATE=0.0007;EUR_AF=0.27;LDAF=0.2538;RSQ=0.9672;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 18324564 rs750559 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.18;AN=2;ASN_AF=0.16;AVGPOST=0.9950;ERATE=0.0004;EUR_AF=0.27;LDAF=0.1986;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +22 18370066 rs4819472 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 18893902 rs408469 G C 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.04;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0335;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.71,-0.27,-0.58 +22 18893995 rs409155 C G 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0345;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.00,-0.00,-3.55 +22 18897795 rs56190723 A G 100 PASS AA=N;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=0.9798;ERATE=0.0048;EUR_AF=0.04;LDAF=0.0955;RSQ=0.9140;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.65,-0.11 +22 18899016 rs428224 G A 100 PASS AA=g;AC=1;AF=0.85;AFR_AF=0.59;AMR_AF=0.93;AN=2;ASN_AF=0.91;AVGPOST=0.9854;ERATE=0.0014;EUR_AF=0.92;LDAF=0.8431;RSQ=0.9628;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.31,-0.01,-1.71 +22 18900669 rs383964 A G 100 PASS AA=N;AC=1;AF=0.91;AFR_AF=0.80;AMR_AF=0.95;AN=2;ASN_AF=0.96;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.93;LDAF=0.9141;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.40 +22 18900750 rs372055 G A 100 PASS AA=N;AC=1;AF=0.77;AFR_AF=0.64;AMR_AF=0.79;AN=2;ASN_AF=0.82;AVGPOST=0.9930;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7674;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-2.91,-0.01,-1.66 +22 18900868 rs16983347 G A 100 PASS AA=N;AC=1;AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0193;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.71 +22 18901004 rs450046 C T 100 PASS AA=N;AC=1;AF=0.91;AFR_AF=0.80;AMR_AF=0.95;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9130;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +22 18904414 rs455072 A G 100 PASS AA=N;AC=1;AF=0.76;AFR_AF=0.51;AMR_AF=0.86;AN=2;ASN_AF=0.82;AVGPOST=0.9021;ERATE=0.0324;EUR_AF=0.82;LDAF=0.7368;RSQ=0.8277;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:0.850:-0.48,-0.48,-0.48 +22 18905882 rs2904550 G T 100 PASS AA=t;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=0.9951;ERATE=0.0153;EUR_AF=0.03;LDAF=0.0302;RSQ=0.9325;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 18907124 rs1076466 G A 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.40;AMR_AF=0.39;AN=2;ASN_AF=0.74;AVGPOST=0.9771;ERATE=0.0008;EUR_AF=0.39;LDAF=0.4845;RSQ=0.9690;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +22 18908875 rs1808320 A G 100 PASS AA=.;AC=1;AF=0.70;AFR_AF=0.87;AMR_AF=0.60;AN=2;ASN_AF=0.81;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.56;LDAF=0.7027;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +22 18910301 rs2008904 A G 100 PASS AA=.;AC=1;AF=0.75;AFR_AF=0.91;AMR_AF=0.65;AN=2;ASN_AF=0.96;AVGPOST=0.9944;ERATE=0.0006;EUR_AF=0.54;LDAF=0.7507;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 18910307 rs2008903 G A 100 PASS AA=.;AC=1;AF=0.75;AFR_AF=0.91;AMR_AF=0.65;AN=2;ASN_AF=0.96;AVGPOST=0.9934;ERATE=0.0005;EUR_AF=0.54;LDAF=0.7503;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 18912678 rs4819756 A G 100 PASS AA=.;AC=1;AF=0.74;AFR_AF=0.87;AMR_AF=0.65;AN=2;ASN_AF=0.97;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.53;LDAF=0.7413;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 19026613 rs2072123 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.52;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3948;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19077049 rs2800960 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=0.82;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.90;LDAF=0.9029;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +22 19109609 rs62223868 A C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.37;AMR_AF=0.44;AN=2;ASN_AF=0.39;AVGPOST=0.9560;ERATE=0.0042;EUR_AF=0.37;LDAF=0.3815;RSQ=0.9299;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-1.19,-0.03 +22 19109753 rs11550628 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.53;AMR_AF=0.39;AN=2;ASN_AF=0.31;AVGPOST=0.9319;ERATE=0.0090;EUR_AF=0.33;LDAF=0.3781;RSQ=0.9031;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.31,-0.01,-1.71 +22 19109764 rs11550626 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9523;ERATE=0.0051;EUR_AF=0.37;LDAF=0.4091;RSQ=0.9336;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.050:-2.89,-0.01,-1.66 +22 19184095 rs1061325 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.29;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.52;LDAF=0.3802;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19187375 rs9605957 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.55;AMR_AF=0.50;AN=2;ASN_AF=0.69;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.50;LDAF=0.5609;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.00 +22 19197896 rs698423 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.96;AMR_AF=0.72;AN=2;ASN_AF=0.94;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.64;LDAF=0.8036;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19220648 rs807458 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.06;AMR_AF=0.38;AN=2;ASN_AF=0.25;AVGPOST=0.9882;ERATE=0.0038;EUR_AF=0.48;LDAF=0.3114;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19455376 rs5746742 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.48;AMR_AF=0.48;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4685;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19467652 rs5748232 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.13;AMR_AF=0.53;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4369;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19504318 rs2073733 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.04;AMR_AF=0.40;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3176;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19506456 rs2073760 G T 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.03;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9960;ERATE=0.0074;EUR_AF=0.43;LDAF=0.2976;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19702274 rs117051690 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.09;AVGPOST=0.9913;ERATE=0.0005;LDAF=0.0504;RSQ=0.9314;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.700:-3.11,-0.47,-0.18 +22 19839438 rs17745302 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0393;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 19867771 rs1139795 C T 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.67;AMR_AF=0.20;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.15;LDAF=0.2483;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 19868218 rs1139793 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.94;AMR_AF=0.67;AN=2;ASN_AF=0.64;AVGPOST=0.9866;ERATE=0.0017;EUR_AF=0.72;LDAF=0.7421;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 19882984 rs5992495 T G 100 PASS AA=g;AC=2;AF=0.23;AFR_AF=0.56;AMR_AF=0.18;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2309;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 19885548 rs12169091 G T 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.53;AMR_AF=0.18;AN=2;ASN_AF=0.05;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=0.18;LDAF=0.2246;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +22 19898887 rs45550336 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0325;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 19906511 rs11541479 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.35;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1609;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19907118 rs5748470 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.89;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6056;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19950235 rs4633 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.33;AMR_AF=0.39;AN=2;ASN_AF=0.27;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3901;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19951271 rs4680 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.31;AMR_AF=0.39;AN=2;ASN_AF=0.29;AVGPOST=0.9980;ERATE=0.0018;EUR_AF=0.52;LDAF=0.3907;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19958829 rs5993890 G A 100 PASS AA=g;AC=1;AF=0.07;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0710;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.08,-0.80 +22 19959366 rs165824 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.88;AMR_AF=0.78;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7909;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +22 19959473 rs165815 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.45;AMR_AF=0.69;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6581;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 19959955 rs2073744 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.77;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7755;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 19960394 rs758373 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.41;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1266;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 19960606 rs2240715 G C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.74;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4661;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 19967226 rs60067834 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0429;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.80 +22 19967248 rs55725132 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0426;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 19968971 rs2073748 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.38;AMR_AF=0.34;AN=2;ASN_AF=0.23;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3259;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.71,-0.09 +22 19969075 rs2073747 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.78;AMR_AF=0.68;AN=2;ASN_AF=0.61;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7155;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 19969106 rs2240717 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.58;AMR_AF=0.36;AN=2;ASN_AF=0.23;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3753;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 19969495 rs33992092 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0224;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 19978074 rs16982894 A T 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.16;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0608;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.12 +22 20097643 rs181969325 C T 100 PASS AA=C;AC=1;AF=0.0032;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 20106681 rs150586231 G A 100 PASS AA=G;AC=1;AF=0.0032;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 20755098 rs1990249 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.74;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6252;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 20761063 rs2228236 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.17;AMR_AF=0.14;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1166;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 20779768 rs874101 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.63;AMR_AF=0.55;AN=2;ASN_AF=0.30;AVGPOST=0.9894;ERATE=0.0009;EUR_AF=0.63;LDAF=0.5282;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.10,-0.69,-5.00 +22 20779822 rs874100 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.36;AMR_AF=0.31;AN=2;ASN_AF=0.04;AVGPOST=0.9855;ERATE=0.0010;EUR_AF=0.39;LDAF=0.2809;RSQ=0.9717;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.50 +22 20780079 rs185252842 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;ASN_AF=0.0035;AVGPOST=0.9921;ERATE=0.0011;EUR_AF=0.0013;LDAF=0.0258;RSQ=0.8773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.05,-0.47,-0.18 +22 20780296 rs9680797 G A 100 PASS AA=g;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9956;ERATE=0.0006;EUR_AF=0.04;LDAF=0.0212;RSQ=0.9226;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 20800835 rs8748 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1947;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 20936873 rs116529718 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=0.9909;ERATE=0.0005;LDAF=0.0250;RSQ=0.8785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.600:-0.35,-0.41,-0.78 +22 20937601 rs165643 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1668;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 20939123 rs165835 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1730;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 20939400 rs61741073 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0325;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 21066789 rs5996654 A G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.48;AVGPOST=0.9487;ERATE=0.0083;EUR_AF=0.35;LDAF=0.4238;RSQ=0.9201;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +22 21066897 rs1135929 G A 100 PASS AA=g;AC=2;AF=0.39;AFR_AF=0.41;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=0.9318;ERATE=0.0075;EUR_AF=0.30;LDAF=0.3792;RSQ=0.8992;SNPSOURCE=EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:1.950:-0.48,-0.48,-0.48 +22 21066936 rs5996655 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.35;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9466;ERATE=0.0005;EUR_AF=0.27;LDAF=0.3543;RSQ=0.9255;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-2.94,-0.46,-0.18 +22 21066942 rs5996656 G T 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.36;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9469;ERATE=0.0005;EUR_AF=0.27;LDAF=0.3554;RSQ=0.9260;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-2.91,-0.46,-0.19 +22 21068878 rs2329478 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.51;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4672;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21073122 rs1807692 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9811;ERATE=0.0161;EUR_AF=0.42;LDAF=0.4773;RSQ=0.9753;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.150:-5.00,-0.07,-0.86 +22 21075537 rs5751800 A C 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.41;AMR_AF=0.47;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4424;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21088146 rs17819969 C G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.61;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5439;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +22 21107153 rs2329583 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.62;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5468;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21141300 rs4675 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.62;AMR_AF=0.56;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5457;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21153590 rs165758 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.54;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4460;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21167787 rs165854 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.61;AMR_AF=0.52;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5160;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21327834 rs178265 C G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9499;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.73,-0.00 +22 21329123 rs733455 A G 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.40;AMR_AF=0.71;AN=2;ASN_AF=0.46;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.84;LDAF=0.6196;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21331043 rs178269 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +22 21331950 rs178276 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9840;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21335259 rs178278 C A 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.60;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3860;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 21337266 rs178280 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.11;AMR_AF=0.44;AN=2;ASN_AF=0.60;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4011;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 21337415 rs178281 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21340088 rs178287 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.56;AMR_AF=0.45;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4327;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 21343995 rs4822786 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.37;AMR_AF=0.45;AN=2;ASN_AF=0.36;AVGPOST=0.9936;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4163;RSQ=0.9895;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.13,-0.00 +22 21344002 rs7410444 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=0.98;AVGPOST=0.9761;ERATE=0.0065;EUR_AF=0.85;LDAF=0.8763;RSQ=0.9182;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +22 21346485 rs112544 T C 100 PASS AA=t;AC=2;AF=0.67;AFR_AF=0.65;AMR_AF=0.71;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.74;LDAF=0.6740;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21348084 rs178291 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.83;AMR_AF=0.84;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7869;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.24,-0.03 +22 21348914 rs4822790 C T 100 PASS AA=c;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.10;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1616;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 21349037 rs178292 A G 100 PASS AA=g;AC=1;AF=0.79;AFR_AF=0.90;AMR_AF=0.84;AN=2;ASN_AF=0.73;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7940;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 21351018 rs143758478 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.14;AVGPOST=0.9726;ERATE=0.0835;EUR_AF=0.12;LDAF=0.1310;RSQ=0.9012;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 21354970 rs426938 C G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.85;AMR_AF=0.88;AN=2;ASN_AF=0.86;AVGPOST=0.9990;ERATE=0.0014;EUR_AF=0.86;LDAF=0.8592;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21369676 rs3893495 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.10;AMR_AF=0.40;AN=2;ASN_AF=0.22;AVGPOST=0.9738;ERATE=0.0240;EUR_AF=0.39;LDAF=0.2808;RSQ=0.9564;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 21372374 rs55763104 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.38;AMR_AF=0.14;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2331;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.66,-4.70 +22 21377301 rs1548411 C A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.74;AMR_AF=0.63;AN=2;ASN_AF=0.66;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.53;LDAF=0.6276;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21377334 rs1548412 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.18;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1408;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 21380064 rs1477145 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.39;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2895;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-1.87,-0.01,-4.00 +22 21383312 rs2075279 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.38;AMR_AF=0.22;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2874;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.54 +22 21384578 rs2270384 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2692;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 21386019 rs2072550 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.50;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.10;LDAF=0.2694;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 21740793 rs200586909 C G 100 PASS AA=c;AC=1;AF=0.91;AFR_AF=0.84;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=0.6339;ERATE=0.0193;EUR_AF=0.92;LDAF=0.7360;RSQ=0.1661;SNPSOURCE=EXOME;THETA=0.0311;VT=SNP GT:DS:GL 1|0:1.250:-0.48,-0.48,-0.48 +22 21742066 rs200259378 C A 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.57;AMR_AF=0.80;AN=2;ASN_AF=0.89;AVGPOST=0.6257;ERATE=0.0311;EUR_AF=0.74;LDAF=0.6178;RSQ=0.2391;SNPSOURCE=EXOME;THETA=0.0299;VT=SNP GT:DS:GL 1|1:1.450:-0.48,-0.48,-0.48 +22 21800042 rs467181 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.95;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9832;RSQ=0.9501;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21800444 rs128477 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.95;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9819;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 21901347 rs199678571 G T 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.57;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=0.6143;ERATE=0.0309;EUR_AF=0.79;LDAF=0.6463;RSQ=0.2608;SNPSOURCE=EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:1.750:-0.48,-0.48,-0.48 +22 21983260 rs2298429 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.48;AVGPOST=0.9806;ERATE=0.0023;EUR_AF=0.19;LDAF=0.3693;RSQ=0.9704;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:0.800:-0.06,-0.88,-5.00 +22 21984205 rs710177 A G 100 PASS AA=a;AC=1;AF=0.43;AFR_AF=0.40;AMR_AF=0.47;AN=2;ASN_AF=0.48;AVGPOST=0.9904;ERATE=0.0007;EUR_AF=0.40;LDAF=0.4322;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.39 +22 21988524 rs861854 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1180;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 21988599 rs371513 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.12;AMR_AF=0.18;AN=2;ASN_AF=0.04;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1338;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 21988602 rs861853 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.26;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1478;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 21991072 rs861852 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.58;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2827;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 22036832 rs1669112 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.48;AMR_AF=0.59;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5146;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +22 22055394 rs1860 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6741;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22330082 rs239927 T C 100 PASS AA=N;AC=2;AF=0.61;AFR_AF=0.94;AMR_AF=0.56;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.57;LDAF=0.6106;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 22599537 rs1320 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0297;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 22842206 rs11109 T C 100 PASS AA=t;AC=2;AF=0.85;AFR_AF=0.81;AMR_AF=0.89;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8473;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 22842957 rs2236729 T G 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.86;AMR_AF=0.89;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8599;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 22843118 rs2236730 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.68;AMR_AF=0.83;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7863;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 22868493 rs361666 G T 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5295;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22868497 rs361762 G C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5281;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22868773 rs361737 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.23;AMR_AF=0.67;AN=2;ASN_AF=0.41;AVGPOST=0.9874;ERATE=0.0079;EUR_AF=0.68;LDAF=0.5072;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22868776 rs362173 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.24;AMR_AF=0.69;AN=2;ASN_AF=0.42;AVGPOST=0.9921;ERATE=0.0029;EUR_AF=0.69;LDAF=0.5175;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.61,-0.00,-5.00 +22 22869123 rs362003 T C 100 PASS AA=t;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5293;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22869209 rs362124 C G 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5295;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +22 22869218 rs362132 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5295;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22869538 rs361611 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.70;LDAF=0.5287;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22869545 rs361580 T G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5290;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22869548 rs362011 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5291;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22869649 rs361721 G C 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.66;AMR_AF=0.78;AN=2;ASN_AF=0.47;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6603;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22869742 rs361959 C A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5292;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0141;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22890492 rs13604 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.11;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0751;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22890752 rs17497512 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0947;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22890792 rs17497547 T C 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0947;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 22891081 rs2072049 G T 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.38;AMR_AF=0.45;AN=2;ASN_AF=0.43;AVGPOST=0.9965;ERATE=0.0016;EUR_AF=0.55;LDAF=0.4639;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 22892449 rs41277507 T C 100 PASS AA=.;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0174;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 22899234 rs2266988 A G 100 PASS AA=g;AC=1;AF=0.68;AFR_AF=0.77;AMR_AF=0.65;AN=2;ASN_AF=0.74;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6818;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 22989270 rs2330126 G A 100 PASS AA=g;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=0.9600;ERATE=0.0016;EUR_AF=0.15;LDAF=0.1161;RSQ=0.8676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:0.650:-0.16,-0.52,-3.14 +22 22989281 rs3966363 T C 100 PASS AA=N;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.08;AN=2;ASN_AF=0.16;AVGPOST=0.9605;ERATE=0.0014;EUR_AF=0.16;LDAF=0.1236;RSQ=0.8773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:0.900:-2.19,-0.00,-2.57 +22 23482483 rs35211242 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0802;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 23503170 rs5759612 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.51;LDAF=0.5410;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 23503205 rs5759613 G C 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5415;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 23503651 rs713682 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5416;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 23503756 rs737818 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5416;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 23627369 rs140504 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7986;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 23637200 rs2239666 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.42;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3126;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 23653880 rs180801 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.45;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9875;ERATE=0.0027;EUR_AF=0.37;LDAF=0.4591;RSQ=0.9800;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.71,-0.02,-1.42 +22 23655084 rs11558697 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.19;AN=2;AVGPOST=0.9961;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1384;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 23655219 rs180806 G A 100 PASS AA=.;AC=1;AF=0.45;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9640;ERATE=0.0057;EUR_AF=0.37;LDAF=0.4514;RSQ=0.9449;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.12,-0.60 +22 23656148 rs66569843 T G 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.19;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.25;LDAF=0.1345;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 23657735 rs180812 G A 100 PASS AA=.;AC=1;AF=0.46;AFR_AF=0.46;AMR_AF=0.40;AN=2;ASN_AF=0.61;AVGPOST=0.9938;ERATE=0.0043;EUR_AF=0.37;LDAF=0.4601;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 24034288 rs738786 A G 100 PASS AA=a;AC=1;AF=0.55;AFR_AF=0.46;AMR_AF=0.56;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5479;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 24035970 rs2070446 C T 100 PASS AA=t;AC=1;AF=0.76;AFR_AF=0.96;AMR_AF=0.72;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7573;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 24038847 rs1007298 T C 100 PASS AA=N;AC=1;AF=0.75;AFR_AF=0.94;AMR_AF=0.72;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.70;LDAF=0.7536;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 24095221 rs140601102 G A 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 24108288 rs140182 C G 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.76;AMR_AF=0.83;AN=2;ASN_AF=0.68;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.85;LDAF=0.7818;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24108412 rs80027270 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.76;AMR_AF=0.83;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.85;LDAF=0.7829;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +22 24109550 rs131444 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=0.75;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8830;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +22 24121378 rs738792 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.51;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.94;LDAF=0.7702;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.26,-0.35 +22 24122499 rs9612427 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.08;AMR_AF=0.52;AN=2;ASN_AF=0.35;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.51;LDAF=0.3707;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24125565 rs2877173 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.94;AMR_AF=0.88;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8834;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24129493 rs35243495 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9953;ERATE=0.0008;LDAF=0.0104;RSQ=0.8045;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +22 24210736 rs201945538 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 24217449 rs12157360 A G 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.23;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1754;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24226242 rs2070460 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.68;AMR_AF=0.74;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.72;LDAF=0.6961;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24300059 rs200376763 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.24;AVGPOST=0.8697;ERATE=0.0057;EUR_AF=0.13;LDAF=0.1673;RSQ=0.6110;SNPSOURCE=EXOME;THETA=0.0114;VT=SNP GT:DS:GL 0|1:1.300:-2.72,-0.45,-0.19 +22 24303162 rs201728529 G A 100 PASS AA=g;AC=1;AF=0.06;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.8038;ERATE=0.0088;EUR_AF=0.04;LDAF=0.1315;RSQ=0.3217;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-0.48,-0.48,-0.48 +22 24323131 rs55716339 C T 100 PASS AA=c;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.32;AVGPOST=0.9792;ERATE=0.0040;EUR_AF=0.17;LDAF=0.1882;RSQ=0.9490;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.100:-5.00,-0.79,-0.08 +22 24323227 rs76498342 G A 100 PASS AA=g;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.30;AVGPOST=0.9872;ERATE=0.0005;EUR_AF=0.15;LDAF=0.1675;RSQ=0.9597;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:0.900:-1.81,-0.01,-4.70 +22 24325062 rs78284383 G A 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.29;AVGPOST=0.9796;ERATE=0.0008;EUR_AF=0.17;LDAF=0.1638;RSQ=0.9429;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-3.12 +22 24325648 rs201176441 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.30;AVGPOST=0.9154;ERATE=0.0025;EUR_AF=0.18;LDAF=0.1919;RSQ=0.7874;SNPSOURCE=EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +22 24459438 rs77495199 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9415;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24472270 rs2283807 A G 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.47;AMR_AF=0.82;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6644;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24480503 rs4820581 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.88;AMR_AF=0.92;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9141;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24492061 rs2236622 T C 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.46;AMR_AF=0.82;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.80;LDAF=0.6632;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24583138 rs17642338 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0021;EUR_AF=0.04;LDAF=0.0205;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 24621491 rs12627971 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.23;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1806;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 24622648 rs2275984 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3157;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 24627309 rs12159878 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.21;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=0.9676;ERATE=0.0033;EUR_AF=0.20;LDAF=0.2311;RSQ=0.9308;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +22 24717518 rs3747113 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2357;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 24717850 rs204710 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24730587 rs5760351 C T 100 PASS AA=t;AC=1;AF=0.57;AFR_AF=0.61;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5667;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 24761467 rs204718 G A 100 PASS AA=a;AC=2;AF=0.90;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=0.9712;ERATE=0.0674;EUR_AF=0.90;LDAF=0.9015;RSQ=0.8725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24837301 rs5751876 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.34;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5181;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.59 +22 24891355 rs2070475 A T 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.25;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1538;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 24944053 rs4822506 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9846;ERATE=0.0082;EUR_AF=0.99;LDAF=0.9863;RSQ=0.5798;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 24964128 rs4597 T C 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.46;AMR_AF=0.79;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.86;LDAF=0.7532;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 25124095 rs738827 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.52;AMR_AF=0.54;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6601;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 25144912 rs11703684 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2025;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 25145453 rs1892723 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9264;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 25145471 rs1892722 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.67;AMR_AF=0.68;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6440;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 25147324 rs11705460 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.40;AN=2;ASN_AF=0.19;AVGPOST=0.9908;ERATE=0.0315;EUR_AF=0.21;LDAF=0.2294;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 25158326 rs5751975 A G 100 PASS AA=a;AC=1;AF=0.44;AFR_AF=0.42;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4370;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 25255688 rs116852790 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0240;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 25282711 rs16979179 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.05;AN=2;ASN_AF=0.06;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.01;LDAF=0.0457;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 25294369 rs2073201 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.09;AMR_AF=0.08;AN=2;ASN_AF=0.25;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.04;LDAF=0.1127;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 25294376 rs2073202 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.22;AVGPOST=0.9970;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1098;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 25297755 rs139738 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.37;AMR_AF=0.26;AN=2;ASN_AF=0.49;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.19;LDAF=0.3199;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 25297965 rs139739 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.69;AMR_AF=0.52;AN=2;ASN_AF=0.75;AVGPOST=0.9792;ERATE=0.0041;EUR_AF=0.42;LDAF=0.5844;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +22 25315753 rs5752018 G A 100 PASS AA=g;AC=2;AF=0.27;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2746;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 25597331 rs2269672 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6495;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 25601196 rs9608378 C G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.42;AMR_AF=0.72;AN=2;ASN_AF=0.93;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.63;LDAF=0.6754;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 25625554 rs55700037 G A 100 PASS AA=a;AC=1;AF=0.78;AFR_AF=0.76;AMR_AF=0.72;AN=2;ASN_AF=0.96;AVGPOST=0.9958;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7803;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 25627604 rs8140949 G A 100 PASS AA=g;AC=1;AF=0.29;AFR_AF=0.28;AMR_AF=0.27;AN=2;ASN_AF=0.43;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2909;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 25747749 rs117171864 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0302;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 25753231 rs133194 G A 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.29;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4196;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 26830478 rs77572172 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8775;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 26839213 rs35429415 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0160;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 26853905 rs1894704 C A 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=0.9975;ERATE=0.0015;EUR_AF=0.94;LDAF=0.8292;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 26853980 rs1894705 T C 100 PASS AA=t;AC=2;AF=0.86;AFR_AF=0.77;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8652;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.33,-0.00 +22 26854441 rs1894706 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8309;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 26859942 rs5752330 C T 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8072;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 26861545 rs3213583 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.74;AMR_AF=0.74;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8414;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 26862153 rs739289 C A 100 PASS AA=c;AC=1;AF=0.81;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8071;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 26862212 rs713998 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8071;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 26866723 rs13054747 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0195;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 26884039 rs4820682 G A 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.71;AMR_AF=0.84;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8244;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 26888060 rs17850763 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 26894974 rs58798956 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.02;LDAF=0.0270;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 26894985 rs2187956 C T 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.62;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8012;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 26895061 rs2157586 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=1.00;AMR_AF=0.89;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.94;LDAF=0.9309;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 26895337 rs1008530 G A 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.60;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.91;LDAF=0.7960;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 26937327 rs4822735 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.92;LDAF=0.9647;RSQ=0.9695;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 27021401 rs2071862 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.16;AMR_AF=0.12;AN=2;ASN_AF=0.40;AVGPOST=0.9970;ERATE=0.0014;EUR_AF=0.13;LDAF=0.2041;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 27021425 rs4276 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.78;AMR_AF=0.41;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5845;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 27021457 rs5761637 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9186;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 28194747 rs45554336 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.27;AMR_AF=0.03;AN=2;AVGPOST=0.9765;ERATE=0.0007;LDAF=0.0683;RSQ=0.8774;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|0:0.900:-0.48,-0.48,-0.48 +22 29456360 rs6005976 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.15;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0636;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 29456733 rs6005977 T C 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.29;AVGPOST=0.9968;ERATE=0.0054;EUR_AF=0.63;LDAF=0.4832;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 29621128 rs743920 C G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.78;AMR_AF=0.33;AN=2;ASN_AF=0.58;AVGPOST=0.9935;ERATE=0.0342;EUR_AF=0.12;LDAF=0.4220;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0225;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 29627542 rs201840101 C G 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9991;ERATE=0.0003;LDAF=0.0014;RSQ=0.7477;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.950:-0.15,-0.54,-3.30 +22 29654833 rs61736091 C T 100 PASS AA=C;AC=1;AF=0.0023;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9992;ERATE=0.0004;LDAF=0.0027;RSQ=0.8801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 29659960 rs879580 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.16;LDAF=0.2163;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +22 29664367 rs202208272 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 29669693 rs4820804 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.19;AMR_AF=0.51;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3340;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 29695545 rs200714851 G A 100 PASS AA=G;AC=1;AF=0.0023;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0006;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 29704125 rs11090564 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.18;AMR_AF=0.51;AN=2;ASN_AF=0.30;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.35;LDAF=0.3256;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.06,-0.92,-5.00 +22 29711251 rs2519485 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9859;ERATE=0.0009;EUR_AF=0.99;LDAF=0.9894;RSQ=0.4642;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-0.88,-0.39,-0.33 +22 29727866 rs174765 C T 100 PASS AA=c;AC=1;AF=0.55;AFR_AF=0.41;AMR_AF=0.40;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5488;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 29727886 rs2857465 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 29755888 rs2072051 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.86;AMR_AF=0.45;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6563;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 29834741 rs201219707 G A 100 PASS AA=-;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 29837537 rs3804076 T C 100 PASS AA=-;AC=1;AF=0.26;AFR_AF=0.05;AMR_AF=0.39;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2625;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +22 29837583 rs10211999 C T 100 PASS AA=-;AC=1;AF=0.04;AFR_AF=0.14;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0357;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +22 29881884 rs4823040 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9793;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 29885861 rs165923 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.85;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.77;LDAF=0.8290;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 29886413 rs165625 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.85;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8309;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +22 29908025 rs16987733 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0188;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 29965168 rs467669 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0851;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30125596 rs5997507 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0708;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30198225 rs113225934 G T 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30202774 rs737945 G C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.50;AMR_AF=0.37;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5156;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30367014 rs16988135 A T 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1307;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30374920 rs737907 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1019;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30399000 rs12165769 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0999;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30403996 rs2074204 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.54;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3089;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30405151 rs41157 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.87;AMR_AF=0.76;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6705;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30414091 rs11705418 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0895;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30418161 rs41168 A C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.86;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.61;LDAF=0.6713;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +22 30683105 rs116527400 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=0.9983;ERATE=0.0004;LDAF=0.0230;RSQ=0.9711;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30688339 rs77842957 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0247;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30733914 rs2074731 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.29;AN=2;ASN_AF=0.33;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2022;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30738161 rs9608885 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.84;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.7212;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30752696 rs5994293 G T 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.48;AMR_AF=0.61;AN=2;ASN_AF=0.75;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.49;LDAF=0.5736;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30766466 rs12167903 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0220;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30771554 rs2015035 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9777;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30782731 rs12171261 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2445;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30823113 rs2072160 T G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.19;LDAF=0.2587;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30823196 rs5753130 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.51;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.46;LDAF=0.5516;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30857373 rs2240345 A C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.90;AMR_AF=0.66;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7518;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30857448 rs5749104 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.90;AMR_AF=0.65;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7394;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30862400 rs1057995 T A 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.90;AMR_AF=0.66;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7527;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30864610 rs4820853 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.49;AMR_AF=0.41;AN=2;ASN_AF=0.45;AVGPOST=0.9985;ERATE=0.0025;EUR_AF=0.34;LDAF=0.4129;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30864692 rs4820854 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.89;AMR_AF=0.66;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7413;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 30888492 rs61744139 C G 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30891412 rs8138701 G A 100 PASS AA=g;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.04;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0685;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30901592 rs9608956 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.04;AVGPOST=0.9939;ERATE=0.0019;EUR_AF=0.25;LDAF=0.2066;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.62 +22 30951948 rs61739203 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30953280 rs55674628 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0128;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 30953295 rs2267161 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.34;AMR_AF=0.25;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3158;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 30987861 rs737953 G C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.57;AMR_AF=0.51;AN=2;ASN_AF=0.25;AVGPOST=0.9941;ERATE=0.0038;EUR_AF=0.59;LDAF=0.4851;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31006860 rs9606756 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1019;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31011557 rs2267163 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.77;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5868;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31011610 rs1801198 G C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.77;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5868;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31013419 rs9621049 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.14;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0951;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31032920 rs5997714 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.87;AMR_AF=0.61;AN=2;ASN_AF=0.47;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6253;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +22 31060029 rs1005887 G C 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.78;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9978;ERATE=0.0103;EUR_AF=0.31;LDAF=0.4713;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +22 31091139 rs13053290 A G 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.53;AMR_AF=0.25;AN=2;ASN_AF=0.0017;AVGPOST=0.9987;ERATE=0.0010;EUR_AF=0.28;LDAF=0.2582;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31286843 rs61729258 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0216;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31302233 rs3804085 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.59;AMR_AF=0.40;AN=2;ASN_AF=0.63;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.31;LDAF=0.4702;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31329056 rs2074578 G C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.63;AMR_AF=0.56;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5914;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31333631 rs3747151 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.38;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4603;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31335724 rs1005252 T A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.63;AMR_AF=0.56;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5909;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31342376 rs2072132 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.24;AMR_AF=0.36;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3733;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31486911 rs2074737 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.45;AMR_AF=0.16;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2847;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31491295 rs3205187 G C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.54;AMR_AF=0.56;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.67;LDAF=0.4767;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31491332 rs5997872 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.18;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1417;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31497054 rs5753459 A C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.93;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9857;ERATE=0.0064;EUR_AF=0.85;LDAF=0.9087;RSQ=0.9435;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.67,-0.00 +22 31529043 rs9917541 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2187;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +22 31531875 rs150521769 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31533843 rs2232180 G A 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0046;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31533967 rs2074739 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.44;AMR_AF=0.47;AN=2;ASN_AF=0.39;AVGPOST=0.9981;ERATE=0.0011;EUR_AF=0.57;LDAF=0.4783;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31535995 rs2074734 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.19;AMR_AF=0.13;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1832;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31536133 rs2232176 A C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.73;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8179;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31591512 rs61736799 C A 100 PASS AA=C;AC=1;AF=0.0046;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31600460 rs2413035 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.98;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.8268;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31621792 rs5997917 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.51;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2038;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31663842 rs2228619 C G 100 PASS AA=.;AC=2;AF=0.82;AFR_AF=0.98;AMR_AF=0.76;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.71;LDAF=0.8231;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31668721 rs141331772 G A 100 PASS AA=.;AC=1;AF=0.0018;AFR_AF=0.0041;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0019;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31679064 rs115977339 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0049;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.00 +22 31679110 rs2040533 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.98;AMR_AF=0.76;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.71;LDAF=0.8231;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.10,-0.00 +22 31685458 rs5753543 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.98;AMR_AF=0.76;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.71;LDAF=0.8232;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31687313 rs4820044 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9967;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9747;RSQ=0.9462;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +22 31724942 rs145023907 G A 100 PASS AA=G;AC=1;AF=0.0014;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31737436 rs62236170 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.03;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0235;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 31829981 rs115098936 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0073;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31971258 rs5753700 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9556;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 31985498 rs200928606 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0002;LDAF=0.0006;RSQ=0.7844;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 31998612 rs2006771 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.41;AMR_AF=0.42;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3513;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 32002294 rs5753723 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.82;AN=2;ASN_AF=0.93;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8771;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 32011225 rs12171042 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.58;AMR_AF=0.31;AN=2;ASN_AF=0.45;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3938;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32014250 rs56219558 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1049;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.12,-0.62 +22 32097775 rs6518754 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.22;AMR_AF=0.36;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.51;LDAF=0.3730;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 32179850 rs138286 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9864;RSQ=0.9614;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 32334058 rs75883264 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0180;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32352791 rs1049583 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1979;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 32482321 rs5998233 T G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.87;AMR_AF=0.32;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4067;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 32546946 rs2019949 C T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.85;AMR_AF=0.28;AN=2;ASN_AF=0.13;AVGPOST=0.9953;ERATE=0.0009;EUR_AF=0.35;LDAF=0.3904;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +22 32547012 rs3888536 G A 100 PASS AA=A;AC=2;AF=0.22;AFR_AF=0.30;AMR_AF=0.21;AN=2;ASN_AF=0.10;AVGPOST=0.9665;ERATE=0.0211;EUR_AF=0.28;LDAF=0.2232;RSQ=0.9402;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:1.800:-5.00,-0.65,-0.11 +22 32554985 rs5998267 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.83;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5338;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 32554996 rs12160688 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.12;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0626;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32586854 rs136467 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.72;AMR_AF=0.33;AN=2;ASN_AF=0.11;AVGPOST=0.9592;ERATE=0.0170;EUR_AF=0.43;LDAF=0.3924;RSQ=0.9499;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-1.41,-0.02,-5.00 +22 32586875 rs136468 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.75;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=0.9719;ERATE=0.0088;EUR_AF=0.44;LDAF=0.4038;RSQ=0.9666;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-3.49,-0.00,-5.00 +22 32586878 rs136469 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.74;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=0.9737;ERATE=0.0067;EUR_AF=0.44;LDAF=0.4052;RSQ=0.9690;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.74,-0.00,-5.00 +22 32586926 rs136470 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.80;AMR_AF=0.37;AN=2;ASN_AF=0.13;AVGPOST=0.9968;ERATE=0.0027;EUR_AF=0.49;LDAF=0.4425;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-3.85,-0.00,-5.00 +22 32587023 rs55974778 C G 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.77;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=0.9654;ERATE=0.0159;EUR_AF=0.43;LDAF=0.4037;RSQ=0.9572;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:0.950:-0.11,-0.66,-4.70 +22 32587027 rs136472 G C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.83;AMR_AF=0.35;AN=2;ASN_AF=0.13;AVGPOST=0.9755;ERATE=0.0132;EUR_AF=0.46;LDAF=0.4342;RSQ=0.9716;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.22,-0.01,-2.04 +22 32587348 rs9621401 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0366;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32589023 rs136478 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.48;AMR_AF=0.29;AN=2;ASN_AF=0.13;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3493;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32589034 rs136479 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.80;AMR_AF=0.37;AN=2;ASN_AF=0.13;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4442;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32616870 rs73164039 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0896;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32621619 rs2294208 C T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.75;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4178;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32625210 rs5998322 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.13;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0631;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32626908 rs2068209 G A 100 PASS AA=.;AC=1;AF=0.34;AFR_AF=0.59;AMR_AF=0.30;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3402;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32650200 rs2235171 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.19;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0027;EUR_AF=0.04;LDAF=0.0727;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32756744 rs2076035 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.67;AMR_AF=0.48;AN=2;ASN_AF=0.51;AVGPOST=0.9870;ERATE=0.0206;EUR_AF=0.40;LDAF=0.5024;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32791003 rs2072818 A C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.77;AMR_AF=0.52;AN=2;ASN_AF=0.50;AVGPOST=0.9803;ERATE=0.0255;EUR_AF=0.46;LDAF=0.5519;RSQ=0.9726;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 32795641 rs5749426 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.62;AMR_AF=0.35;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4397;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32808078 rs11545749 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0594;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32810378 rs35856742 T G 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0589;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32811952 rs5998478 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.87;AMR_AF=0.56;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5955;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 32811973 rs115332147 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 32828343 rs9609551 T C 100 PASS AA=T;AC=2;AF=0.22;AFR_AF=0.52;AMR_AF=0.19;AN=2;AVGPOST=0.9977;ERATE=0.0026;EUR_AF=0.22;LDAF=0.2239;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0124;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 32831711 rs5994570 C G 100 PASS AA=C;AC=2;AF=0.13;AFR_AF=0.43;AMR_AF=0.07;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1278;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 32875190 rs11107 G A 100 PASS AA=g;AC=1;AF=0.49;AFR_AF=0.38;AMR_AF=0.53;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 32887150 rs9726 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.37;AMR_AF=0.53;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 32937740 rs135479 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.49;AMR_AF=0.60;AN=2;ASN_AF=0.73;AVGPOST=0.9923;ERATE=0.0289;EUR_AF=0.53;LDAF=0.5858;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 33253280 rs9862 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.88;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=0.9963;ERATE=0.0036;EUR_AF=0.49;LDAF=0.6400;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 34157494 rs117199378 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0160;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 35463162 rs361863 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.84;AMR_AF=0.68;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7643;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 35463179 rs361668 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.84;AMR_AF=0.68;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7642;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 35463249 rs362090 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.41;AMR_AF=0.58;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5782;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 35478486 rs2899241 A C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.87;AMR_AF=0.73;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6472;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 35481493 rs61735502 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0526;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 35660875 rs1053593 G T 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.09;AMR_AF=0.60;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4785;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 35679951 rs2272789 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.34;AMR_AF=0.62;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5752;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 35695894 rs200751924 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0086;RSQ=0.9887;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.48 +22 35742925 rs743810 T G 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.67;AMR_AF=0.32;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.23;LDAF=0.3187;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 35743124 rs2071745 G C 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.63;AMR_AF=0.31;AN=2;ASN_AF=0.12;AVGPOST=0.9973;ERATE=0.0021;EUR_AF=0.23;LDAF=0.3026;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 35799542 rs713618 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4988;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 35806821 rs2307343 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +22 35808708 rs2307344 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0916;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 35816015 rs2307338 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0145;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36007045 rs7292 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.59;AMR_AF=0.47;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5536;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36007075 rs7293 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5260;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36122930 rs2076671 C T 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.32;AMR_AF=0.25;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3651;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36124860 rs2076673 C G 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.24;AMR_AF=0.24;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3488;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36537587 rs190228713 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +22 36537893 rs3827346 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.02;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2941;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36538053 rs6000152 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0215;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 36556729 rs79419411 T C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0219;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 36556823 rs132653 G T 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.46;AMR_AF=0.89;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8011;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36556964 rs916334 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.07;AMR_AF=0.57;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4676;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +22 36623731 rs132760 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36623920 rs7285167 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.28;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1111;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36657596 rs713929 A G 100 PASS AA=a;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8437;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36657628 rs136163 T G 100 PASS AA=t;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8423;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36657789 rs136164 T C 100 PASS AA=t;AC=1;AF=0.65;AFR_AF=0.56;AMR_AF=0.70;AN=2;ASN_AF=0.77;AVGPOST=0.9864;ERATE=0.0050;EUR_AF=0.58;LDAF=0.6430;RSQ=0.9803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36661149 rs76406801 A G 100 PASS AA=a;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8418;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36661152 rs28480494 G A 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8419;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36661330 rs2239785 G A 100 PASS AA=g;AC=1;AF=0.70;AFR_AF=0.38;AMR_AF=0.82;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7048;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36661409 rs116136671 A G 100 PASS AA=a;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0105;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 36661536 rs136174 C A 100 PASS AA=c;AC=2;AF=0.84;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8391;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36661566 rs136175 G A 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8391;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36661646 rs136176 G A 100 PASS AA=a;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8419;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36661842 rs136177 G A 100 PASS AA=a;AC=2;AF=0.83;AFR_AF=0.92;AMR_AF=0.85;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8299;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36661891 rs16996616 G A 100 PASS AA=g;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0233;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0090;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 36684354 rs2269529 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2843;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36684358 rs2269530 C A 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2834;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36689917 rs145429636 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0127;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +22 36690113 rs4821478 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.58;AMR_AF=0.68;AN=2;ASN_AF=0.24;AVGPOST=0.9968;ERATE=0.0014;EUR_AF=0.66;LDAF=0.5345;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 36691607 rs710181 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.98;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36708084 rs2413396 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.45;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8058;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36872750 rs2281082 T G 100 PASS AA=g;AC=2;AF=0.65;AFR_AF=0.78;AMR_AF=0.80;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6476;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36900271 rs2277841 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.25;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6710;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36900806 rs760718 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.43;AMR_AF=0.71;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5123;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 36900812 rs9610522 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.08;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0161;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 36962353 rs2267338 C G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.90;AMR_AF=0.59;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5393;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37163329 rs1048012 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.68;AMR_AF=0.71;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8002;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 37260123 rs10854695 G A 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.20;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0791;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 37267767 rs2072708 A G 100 PASS AA=g;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.71;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6409;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-2.26,-0.01,-1.74 +22 37267769 rs6000455 G C 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.20;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0466;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-3.74,-0.14,-0.55 +22 37268501 rs2072710 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.42;AMR_AF=0.71;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6481;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37271802 rs2072712 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1120;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37271882 rs2075939 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.97;AMR_AF=0.81;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8245;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 37273742 rs11552115 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37319425 rs2072713 G T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.31;AMR_AF=0.55;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0021;EUR_AF=0.53;LDAF=0.4907;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37328966 rs1534879 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.20;AMR_AF=0.56;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5284;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37330082 rs2075937 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.12;AMR_AF=0.53;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.49;LDAF=0.5009;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-1.06,-0.04 +22 37333794 rs131840 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.62;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9917;ERATE=0.0006;EUR_AF=0.80;LDAF=0.8017;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37387505 rs9610625 C A 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.27;AMR_AF=0.37;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2271;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37414528 rs12161085 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0050;RSQ=0.9583;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37453452 rs710185 C T 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.65;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8641;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 37462936 rs855791 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.87;AMR_AF=0.49;AN=2;ASN_AF=0.44;AVGPOST=0.9984;ERATE=0.0070;EUR_AF=0.60;LDAF=0.6009;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37466930 rs111813777 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=0.9988;ERATE=0.0004;LDAF=0.0251;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37469591 rs4820268 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.70;AMR_AF=0.47;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5429;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37470604 rs2072860 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.69;AMR_AF=0.47;AN=2;ASN_AF=0.43;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5399;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37470635 rs111807510 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0237;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37485595 rs2235326 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.85;AMR_AF=0.50;AN=2;ASN_AF=0.62;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.63;LDAF=0.6575;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37531521 rs3218305 G C 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.01;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0010;LDAF=0.0691;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37578214 rs916235 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.26;AMR_AF=0.19;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2962;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37578579 rs229519 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.65;AMR_AF=0.44;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4497;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37578807 rs229520 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.48;AMR_AF=0.21;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3488;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.03,-1.13 +22 37581485 rs229527 C A 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.69;AVGPOST=0.9846;ERATE=0.0124;EUR_AF=0.39;LDAF=0.4591;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37603021 rs2071710 G A 100 PASS AA=g;AC=1;AF=0.34;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3378;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37603051 rs229569 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.44;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3967;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 37603213 rs199668206 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37603390 rs86582 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.44;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3968;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 37603733 rs34943557 G A 100 PASS AA=G;AC=1;AF=0.0032;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.0013;LDAF=0.0034;RSQ=0.9456;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37603744 rs86583 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.52;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.23;LDAF=0.4156;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 37622815 rs1064498 A G 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.10;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2445;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37622861 rs73889256 C A 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0060;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37627234 rs9610682 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.58;AMR_AF=0.34;AN=2;ASN_AF=0.29;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3936;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37627246 rs9610683 G C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.57;AMR_AF=0.34;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.38;LDAF=0.3914;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37637607 rs6000622 A G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.22;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0017;LDAF=0.0511;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0156;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37695256 rs2301435 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.65;AMR_AF=0.65;AN=2;ASN_AF=0.67;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.57;LDAF=0.6281;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37699377 rs2239822 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.82;AMR_AF=0.71;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6994;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 37707072 rs56378525 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0329;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37707140 rs55662193 C T 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0324;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37770066 rs8142615 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.53;AMR_AF=0.47;AN=2;ASN_AF=0.36;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4186;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37770357 rs7292751 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.38;LDAF=0.4604;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37770630 rs2071856 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.24;AMR_AF=0.19;AN=2;ASN_AF=0.38;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2925;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37771158 rs2071857 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.44;AMR_AF=0.60;AN=2;ASN_AF=0.37;AVGPOST=0.9929;ERATE=0.0025;EUR_AF=0.43;LDAF=0.4432;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37875446 rs147087271 A G 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 37902177 rs738304 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.24;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9855;ERATE=0.0193;EUR_AF=0.31;LDAF=0.2412;RSQ=0.9715;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37906262 rs9610775 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.19;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=0.9931;ERATE=0.0044;EUR_AF=0.20;LDAF=0.1785;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37964098 rs73418181 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0160;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37964231 rs73418183 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 37964575 rs77148107 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0165;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38061520 rs62236667 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2754;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38119213 rs12628603 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.39;AMR_AF=0.60;AN=2;ASN_AF=0.66;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5554;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38121152 rs9610841 C A 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3756;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38122122 rs5756795 T C 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.58;AVGPOST=0.9923;ERATE=0.0023;EUR_AF=0.38;LDAF=0.3730;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38122448 rs739137 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.58;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.39;LDAF=0.3778;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.97,-0.05 +22 38122462 rs739138 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.22;AMR_AF=0.61;AN=2;ASN_AF=0.93;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.72;LDAF=0.6450;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +22 38129332 rs7284476 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.58;AVGPOST=0.9957;ERATE=0.0008;EUR_AF=0.39;LDAF=0.3771;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +22 38130385 rs13054052 A C 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.39;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=0.9944;ERATE=0.0032;EUR_AF=0.57;LDAF=0.5542;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +22 38130472 rs8140958 T C 100 PASS AA=t;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9715;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.73,-0.00 +22 38137087 rs137920289 G A 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0048;RSQ=0.9592;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +22 38151170 rs11704996 G A 100 PASS AA=G;AC=2;AF=0.04;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0448;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38155317 rs5756810 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9721;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38204089 rs79849571 C T 100 PASS AA=c;AC=2;AF=0.60;AFR_AF=0.64;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5971;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.76,-0.00 +22 38212762 rs13911 A G 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7368;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +22 38220964 rs8138029 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.92;AMR_AF=0.64;AN=2;ASN_AF=0.86;AVGPOST=0.9591;ERATE=0.0015;EUR_AF=0.62;LDAF=0.7455;RSQ=0.9206;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.700:-3.06,-0.47,-0.18 +22 38251686 rs2157472 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.95;AMR_AF=0.65;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7763;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38282897 rs17752670 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0842;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 38323507 rs9610875 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9980;ERATE=0.0012;EUR_AF=0.24;LDAF=0.1744;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 38333103 rs143576141 G A 100 PASS AA=G;AC=1;AF=0.0037;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0038;RSQ=0.9672;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.85 +22 38341134 rs139859 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.96;AMR_AF=0.64;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7673;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38369976 rs139884 A G 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.87;AMR_AF=0.62;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7129;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38467784 rs760975 G C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.89;AMR_AF=0.58;AN=2;ASN_AF=0.76;AVGPOST=0.9986;ERATE=0.0036;EUR_AF=0.62;LDAF=0.7106;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38470464 rs137938646 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0121;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 38474696 rs2076371 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.90;AVGPOST=0.9973;ERATE=0.0017;EUR_AF=0.75;LDAF=0.8299;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38477156 rs199982500 A C 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9984;ERATE=0.0005;LDAF=0.0013;RSQ=0.5143;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.66,-0.11 +22 38485064 rs62235125 C G 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.16;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=0.9678;ERATE=0.0017;EUR_AF=0.41;LDAF=0.3671;RSQ=0.9477;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:1.850:-0.85,-0.39,-0.34 +22 38503847 rs6001006 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.91;AMR_AF=0.86;AN=2;ASN_AF=0.66;AVGPOST=0.9862;ERATE=0.0010;EUR_AF=0.74;LDAF=0.7783;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0156;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38504372 rs5750540 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=0.9542;ERATE=0.0159;EUR_AF=0.73;LDAF=0.7975;RSQ=0.8997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0091;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.05,-0.00 +22 38506509 rs4820313 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38525561 rs2413502 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0498;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38528958 rs11570679 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0498;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +22 38535946 rs12329956 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.43;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2561;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 38535954 rs6001017 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0498;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38539084 rs11570647 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0498;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38565209 rs2267368 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.22;AMR_AF=0.02;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0841;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38565347 rs2267369 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.02;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0754;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38617723 rs2005968 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.16;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0471;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38620907 rs60964283 G T 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.13;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0388;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38643800 rs35589210 C T 100 PASS AA=c;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.0028;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0188;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38696901 rs1803340 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0190;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38710112 rs55915805 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0006;LDAF=0.0179;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 38823136 rs196059 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.85;AMR_AF=0.63;AN=2;ASN_AF=0.93;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.59;LDAF=0.7422;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 38875549 rs401933 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9365;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 38877461 rs12004 T G 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.18;AMR_AF=0.22;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2880;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39069181 rs3747174 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3131;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39125693 rs199588493 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0010;RSQ=0.9009;SNPSOURCE=EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.56,-0.14 +22 39134715 rs1062687 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.53;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3931;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39145721 rs190330060 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0081;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39148483 rs2072798 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3410;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39178701 rs760482 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.39;AMR_AF=0.20;AN=2;ASN_AF=0.68;AVGPOST=0.9987;ERATE=0.0092;EUR_AF=0.27;LDAF=0.3918;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39222652 rs5757299 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.38;AMR_AF=0.27;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4593;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39224248 rs5757300 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.86;AMR_AF=0.42;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0014;EUR_AF=0.61;LDAF=0.6838;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39353680 rs11912424 C G 100 PASS AA=.;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0238;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39355572 rs17000556 A G 100 PASS AA=.;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0279;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39355717 rs5750717 G A 100 PASS AA=.;AC=2;AF=0.78;AFR_AF=0.93;AMR_AF=0.63;AN=2;ASN_AF=0.96;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7834;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 39414224 rs4821854 A G 100 PASS AA=.;AC=2;AF=0.65;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6493;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +22 39440149 rs5750728 C T 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.22;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5077;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.15,-0.03,-5.00 +22 39441096 rs2020390 G T 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.30;AMR_AF=0.63;AN=2;ASN_AF=0.68;AVGPOST=0.9586;ERATE=0.0547;EUR_AF=0.44;LDAF=0.5011;RSQ=0.9447;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39441203 rs4821862 C T 100 PASS AA=.;AC=1;AF=0.58;AFR_AF=0.54;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9936;ERATE=0.0047;EUR_AF=0.47;LDAF=0.5758;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +22 39445380 rs2014881 G A 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.20;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5022;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39445554 rs2076101 G A 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.20;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5018;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39448711 rs6001402 C A 100 PASS AA=.;AC=1;AF=0.52;AFR_AF=0.27;AMR_AF=0.64;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5160;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39448750 rs5757451 T C 100 PASS AA=.;AC=1;AF=0.52;AFR_AF=0.27;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5170;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39496412 rs139294 G C 100 PASS AA=.;AC=1;AF=0.49;AFR_AF=0.83;AMR_AF=0.35;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4926;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39497404 rs139297 G C 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.87;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4979;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39497452 rs139298 A G 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.87;AMR_AF=0.36;AN=2;ASN_AF=0.30;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5012;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39497454 rs139299 G C 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.87;AMR_AF=0.36;AN=2;ASN_AF=0.30;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5021;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39497509 rs139300 A G 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 39498038 rs139302 G C 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.84;AMR_AF=0.34;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4950;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39499653 rs139315 C T 100 PASS AA=.;AC=1;AF=0.49;AFR_AF=0.81;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4882;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39629418 rs34438964 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0024;LDAF=0.0224;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39631747 rs74525460 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39709009 rs2014842 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.69;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2930;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39710211 rs61737788 A G 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0362;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 39711351 rs2076125 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3290;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39770597 rs4821888 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.57;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7334;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39917515 rs4894 A C 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.26;AMR_AF=0.26;AN=2;ASN_AF=0.16;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2528;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 39925806 rs116823887 T C 100 PASS AA=t;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0114;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 40043812 rs5757759 A G 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.86;AVGPOST=0.9773;ERATE=0.0185;EUR_AF=0.41;LDAF=0.5677;RSQ=0.9694;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 40043867 rs57911777 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0007;LDAF=0.0072;RSQ=0.9384;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 40054948 rs5757761 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.55;LDAF=0.7481;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.23,-0.00 +22 40055896 rs136851 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.76;AMR_AF=0.70;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.7367;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 40057273 rs136852 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.54;LDAF=0.7333;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +22 40058186 rs136853 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.74;AMR_AF=0.70;AN=2;ASN_AF=1.00;AVGPOST=0.9919;ERATE=0.0010;EUR_AF=0.54;LDAF=0.7288;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-3.10,-0.47,-0.18 +22 40416025 rs7286006 G A 100 PASS AA=g;AC=1;AF=0.06;AFR_AF=0.26;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0617;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 40574170 rs6001827 T A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.96;AMR_AF=0.66;AN=2;ASN_AF=0.45;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6431;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 40669648 rs733381 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.39;AN=2;ASN_AF=0.31;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2375;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +22 40673999 rs2413621 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.18;AMR_AF=0.81;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6969;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.97,-0.00,-5.00 +22 40681788 rs6001862 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.45;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3490;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 40697377 rs5995843 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.45;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3453;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 40708679 rs2072858 T C 100 PASS AA=t;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.48;AN=2;ASN_AF=0.45;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3462;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 40800518 rs760701 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2089;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 40800544 rs2235318 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2093;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 40801312 rs12483888 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.36;AN=2;ASN_AF=0.30;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1940;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +22 40803112 rs55844816 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1787;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 40803186 rs2018393 G T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.96;AMR_AF=0.63;AN=2;ASN_AF=0.33;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.51;LDAF=0.5824;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 40804150 rs201794307 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 40814500 rs878756 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.93;AMR_AF=0.30;AN=2;ASN_AF=0.12;AVGPOST=0.9956;ERATE=0.0093;EUR_AF=0.37;LDAF=0.4196;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 40814594 rs56211152 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.30;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9845;ERATE=0.0051;EUR_AF=0.16;LDAF=0.1701;RSQ=0.9604;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41075543 rs133072 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.73;AMR_AF=0.44;AN=2;ASN_AF=0.99;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.62;LDAF=0.7122;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41075695 rs133073 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.59;AMR_AF=0.42;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6672;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41195082 rs117487309 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0606;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41244398 rs138344 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.35;AMR_AF=0.68;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.50;LDAF=0.3834;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41537234 rs6002267 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0009;EUR_AF=1.00;LDAF=0.9652;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 41548008 rs20551 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.50;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2102;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41550954 rs4822011 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.51;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6660;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 41551039 rs20552 T A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.51;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.62;LDAF=0.6659;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 41566595 rs6002271 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.51;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2318;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41568480 rs2076577 T C 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.18;AMR_AF=0.75;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.62;LDAF=0.5380;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 41569609 rs2076578 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2906;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41613188 rs9611519 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.48;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2249;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41615376 rs2273085 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.33;AMR_AF=0.48;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.31;LDAF=0.3492;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41617318 rs139472 G C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.68;LDAF=0.7275;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41645757 rs71948 C G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.71;AMR_AF=0.84;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.79;LDAF=0.7540;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41652332 rs4822017 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0645;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41652846 rs4820435 G T 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.57;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.34;LDAF=0.2416;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41657626 rs2235850 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.25;AMR_AF=0.58;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4027;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41726053 rs4822021 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.18;AMR_AF=0.54;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2409;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41737045 rs2294978 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.37;AMR_AF=0.02;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.1961;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41739370 rs1883828 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.71;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.52;LDAF=0.6582;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 41744022 rs761366 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.06;AMR_AF=0.43;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.25;LDAF=0.1880;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41745355 rs2281331 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6593;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 41751437 rs5758308 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.31;AMR_AF=0.01;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.0013;LDAF=0.1833;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41752747 rs12484074 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.52;AN=2;ASN_AF=0.08;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2007;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41783659 rs12484449 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.47;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1815;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41833116 rs202641 C T 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.63;AMR_AF=0.51;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7440;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41863423 rs202631 A G 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.72;AMR_AF=0.52;AN=2;ASN_AF=0.94;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7656;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 41903813 rs137831 A C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3862;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41914593 rs203319 C T 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.64;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0016;EUR_AF=0.22;LDAF=0.4446;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 41919330 rs12484694 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.45;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1847;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 41923279 rs142233044 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42076381 rs5758405 C A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.91;AMR_AF=0.53;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8071;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42128461 rs6002455 T A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.69;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1865;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42139054 rs5751147 G A 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.97;AMR_AF=0.58;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8412;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42139078 rs5751148 A G 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.97;AMR_AF=0.58;AN=2;ASN_AF=0.94;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8418;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42154430 rs8141939 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.29;AMR_AF=0.03;AN=2;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0731;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42159229 rs2050033 G T 100 PASS AA=T;AC=1;AF=0.84;AFR_AF=0.97;AMR_AF=0.58;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8422;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42172080 rs5996064 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.70;AMR_AF=0.18;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2825;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42177899 rs45500192 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.41;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1559;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42206280 rs201589404 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42221846 rs41277466 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.38;AN=2;ASN_AF=0.06;AVGPOST=0.9928;ERATE=0.0039;EUR_AF=0.10;LDAF=0.1357;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42273462 rs17848346 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.23;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0859;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42276742 rs2228314 G C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.62;AMR_AF=0.54;AN=2;ASN_AF=0.23;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3650;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 42276825 rs2229440 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.0224;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42301712 rs2157590 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.08;AMR_AF=0.39;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1415;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-0.26,-0.35,-4.22 +22 42321591 rs5996087 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.36;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1403;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42341308 rs7293091 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.40;AMR_AF=0.42;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2632;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42342462 rs34730141 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0002;LDAF=0.0153;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42343091 rs6002555 G A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.91;AMR_AF=0.50;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3951;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +22 42394785 rs112032144 C T 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.0061;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42423110 rs2301521 G C 100 PASS AA=c;AC=2;AF=0.78;AFR_AF=0.93;AMR_AF=0.71;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7819;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 42463814 rs133369 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.58;AMR_AF=0.69;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.67;LDAF=0.6979;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42473603 rs133383 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.06;AMR_AF=0.50;AN=2;ASN_AF=0.33;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.47;LDAF=0.3464;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42486723 rs1801311 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.55;AMR_AF=0.32;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.33;LDAF=0.3345;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42522613 rs1135840 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.33;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4022;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.09,-0.74 +22 42523409 rs1985842 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9690;ERATE=0.0191;EUR_AF=0.33;LDAF=0.2908;RSQ=0.9218;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.22 +22 42523943 rs16947 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.41;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6573;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42525132 rs1058164 G C 100 PASS AA=N;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.51;AN=2;ASN_AF=0.32;AVGPOST=0.9710;ERATE=0.0084;EUR_AF=0.44;LDAF=0.3868;RSQ=0.9569;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +22 42525952 rs71328650 C A 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.25;AMR_AF=0.52;AN=2;ASN_AF=0.32;AVGPOST=0.9787;ERATE=0.0034;EUR_AF=0.45;LDAF=0.3796;RSQ=0.9691;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.66,-4.70 +22 42565950 rs5996123 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.30;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0694;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42783130 rs11913215 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.17;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0649;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42807455 rs34296033 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0091;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42908870 rs9745 T G 100 PASS AA=.;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0915;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.38 +22 42908897 rs13504 T C 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.16;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9751;ERATE=0.0176;EUR_AF=0.16;LDAF=0.1385;RSQ=0.9173;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.90,-0.01,-4.00 +22 42910769 rs4822146 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.0035;AVGPOST=0.9975;ERATE=0.0009;EUR_AF=0.14;LDAF=0.0939;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.04,-1.11 +22 42911257 rs1137212 A G 100 PASS AA=N;AC=2;AF=0.53;AFR_AF=0.73;AMR_AF=0.34;AN=2;ASN_AF=0.82;AVGPOST=0.9070;ERATE=0.0278;EUR_AF=0.29;LDAF=0.5182;RSQ=0.8942;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:1.950:-0.48,-0.48,-0.48 +22 42912097 rs11553441 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0932;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 42912106 rs1812240 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.06;LDAF=0.2598;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 42967235 rs137046 C T 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.79;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9610;ERATE=0.0065;EUR_AF=0.27;LDAF=0.4961;RSQ=0.9552;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +22 42967241 rs9620065 G C 100 PASS AA=-;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.57;AVGPOST=0.9556;ERATE=0.0123;EUR_AF=0.04;LDAF=0.1988;RSQ=0.9256;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:0.650:-0.06,-0.91,-5.00 +22 42970032 rs137055 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.55;AMR_AF=0.18;AN=2;ASN_AF=0.67;AVGPOST=0.9925;ERATE=0.0041;EUR_AF=0.10;LDAF=0.3648;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.02,-1.33 +22 43024271 rs1800457 G C 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.31;AMR_AF=0.02;AN=2;AVGPOST=0.9987;ERATE=0.0174;LDAF=0.0728;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0102;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43032870 rs2285141 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2257;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43088971 rs9623659 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.47;AMR_AF=0.40;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3348;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43089055 rs6002904 G C 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.86;AMR_AF=0.64;AN=2;ASN_AF=0.66;AVGPOST=0.9939;ERATE=0.0017;EUR_AF=0.59;LDAF=0.6751;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +22 43089849 rs11541159 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.48;AMR_AF=0.40;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3369;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43195147 rs1128013 A G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3532;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43203137 rs738535 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.29;AMR_AF=0.41;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.2984;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43203210 rs11913107 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43206950 rs1018448 A C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.90;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6778;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43218254 rs112907404 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0137;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43218463 rs5758957 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.86;AMR_AF=0.73;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.53;LDAF=0.6677;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43272116 rs77044416 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9943;ERATE=0.0027;EUR_AF=0.0040;LDAF=0.0195;RSQ=0.8944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43278162 rs4822217 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3554;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43278220 rs2899365 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.07;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3318;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43289473 rs5759013 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.07;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2669;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43442599 rs5759111 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.84;AMR_AF=0.69;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.46;LDAF=0.6728;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43455432 rs5759125 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.44;AMR_AF=0.29;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.3579;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43459846 rs1052160 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.28;LDAF=0.1668;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43558926 rs6971 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.98;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8181;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +22 43558999 rs8192468 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9961;ERATE=0.0006;EUR_AF=0.0013;LDAF=0.0203;RSQ=0.9314;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.30 +22 43564963 rs138931 C G 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.66;AMR_AF=0.83;AN=2;ASN_AF=0.98;AVGPOST=0.9951;ERATE=0.0016;EUR_AF=0.68;LDAF=0.7763;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +22 43567789 rs2071729 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.04;LDAF=0.2314;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43569858 rs7291977 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.12;AMR_AF=0.01;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0475;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43570463 rs2269525 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.50;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3225;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43575616 rs4822261 G A 100 PASS AA=g;AC=1;AF=0.17;AFR_AF=0.06;AMR_AF=0.31;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.31;LDAF=0.1742;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43575774 rs138945 A C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.92;AMR_AF=0.68;AN=2;ASN_AF=0.36;AVGPOST=0.9935;ERATE=0.0017;EUR_AF=0.71;LDAF=0.6585;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43575935 rs33970602 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.06;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0379;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43576904 rs2071723 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.20;AMR_AF=0.42;AN=2;ASN_AF=0.29;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3333;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 43600000 rs8141806 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0315;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43603510 rs17003557 C T 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0316;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43603665 rs72619549 G A 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0315;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43604034 rs878034 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0316;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43606143 rs5759217 C T 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.46;AMR_AF=0.77;AN=2;ASN_AF=0.91;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.71;LDAF=0.7161;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43608531 rs7284575 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0535;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.37,-0.24 +22 43610207 rs138993 A G 100 PASS AA=g;AC=1;AF=0.44;AFR_AF=0.38;AMR_AF=0.60;AN=2;ASN_AF=0.10;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.65;LDAF=0.4354;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43614223 rs9623782 C G 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.46;AMR_AF=0.16;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.20;LDAF=0.3302;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43614316 rs9620123 C G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.46;AMR_AF=0.16;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.20;LDAF=0.3314;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43619200 rs6003114 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.23;AMR_AF=0.28;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1952;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43623353 rs129414 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0002;EUR_AF=0.49;LDAF=0.3536;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 43623395 rs129415 C G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.91;AMR_AF=0.65;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.6988;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +22 43625045 rs200810044 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0002;LDAF=0.0007;RSQ=0.6964;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.14 +22 43830996 rs2413761 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.10;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3692;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43831056 rs4331615 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.10;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.48;LDAF=0.3696;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43898650 rs28711226 C T 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.20;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0017;EUR_AF=0.05;LDAF=0.0768;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 43976396 rs9614382 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.76;AMR_AF=0.84;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7683;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44022578 rs110618 C A 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0021;EUR_AF=0.26;LDAF=0.2364;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44079680 rs137794 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.0983;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 44083442 rs5764214 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.48;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3798;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44112845 rs5764234 C T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7915;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44229492 rs138069 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9172;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-2.43,-0.00 +22 44277406 rs55905376 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.17;AMR_AF=0.32;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2952;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 44282276 rs739231 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.23;AMR_AF=0.43;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4876;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44282307 rs739232 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.21;AMR_AF=0.43;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4822;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44283556 rs5764380 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.23;AMR_AF=0.43;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44285428 rs62226145 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0754;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 44285667 rs713864 G A 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.20;AMR_AF=0.38;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.37;LDAF=0.3471;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44285765 rs2017461 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.46;AMR_AF=0.58;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6140;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44287062 rs2071884 A G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.20;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3448;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +22 44322970 rs2076212 G T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=0.9981;ERATE=0.0234;EUR_AF=0.11;LDAF=0.1101;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0273;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 44324676 rs139051 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.63;AMR_AF=0.45;AN=2;ASN_AF=0.37;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5229;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44341986 rs2294917 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.40;AVGPOST=0.9992;ERATE=0.0010;EUR_AF=0.37;LDAF=0.3520;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44342116 rs2294918 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.89;AMR_AF=0.76;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.64;LDAF=0.7696;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44364594 rs5764434 C T 100 PASS AA=t;AC=1;AF=0.72;AFR_AF=0.82;AMR_AF=0.60;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7148;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44368204 rs3177036 A G 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.77;AMR_AF=0.54;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6792;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44368741 rs932430 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.46;AMR_AF=0.40;AN=2;ASN_AF=0.53;AVGPOST=0.9750;ERATE=0.1253;EUR_AF=0.38;LDAF=0.4425;RSQ=0.9277;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44379822 rs10452 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.82;AMR_AF=0.60;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7180;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44379838 rs8418 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.91;AMR_AF=0.63;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7474;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44386281 rs7587 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2300;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 44489868 rs1983609 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.97;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.73;LDAF=0.8699;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44489896 rs738479 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.57;AMR_AF=0.60;AN=2;ASN_AF=0.86;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6410;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44586522 rs2272942 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2112;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 44594476 rs139151 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44594584 rs139152 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2454;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 44602172 rs3842785 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.08;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0669;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 44602229 rs139186 A C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.66;AVGPOST=0.9950;ERATE=0.0036;EUR_AF=0.85;LDAF=0.7562;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 44681612 rs135388 A G 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.29;AVGPOST=0.9961;ERATE=0.0009;EUR_AF=0.63;LDAF=0.4465;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 45128232 rs8141631 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.59;AMR_AF=0.29;AN=2;ASN_AF=0.37;AVGPOST=0.9870;ERATE=0.0118;EUR_AF=0.20;LDAF=0.3493;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45128288 rs5764979 G C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.82;AMR_AF=0.61;AN=2;ASN_AF=0.90;AVGPOST=0.9867;ERATE=0.0095;EUR_AF=0.41;LDAF=0.6573;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45210666 rs2071758 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.37;AVGPOST=0.9988;ERATE=0.0056;EUR_AF=0.27;LDAF=0.2630;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 45218223 rs136662 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 45244930 rs2269543 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.53;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3355;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 45255580 rs7510897 G C 100 PASS AA=g;AC=2;AF=0.23;AFR_AF=0.18;AMR_AF=0.13;AN=2;ASN_AF=0.39;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.19;LDAF=0.2318;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +22 45255630 rs61756769 T C 100 PASS AA=t;AC=2;AF=0.11;AFR_AF=0.17;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1124;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +22 45255637 rs6007344 G C 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.28;AMR_AF=0.16;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.19;LDAF=0.2751;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +22 45258333 rs9614957 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.14;LDAF=0.0609;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45258495 . A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.39;AMR_AF=0.54;AN=2;ASN_AF=0.91;AVGPOST=0.9807;ERATE=0.0146;EUR_AF=0.52;LDAF=0.5929;RSQ=0.9783;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 45309653 rs3213527 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.45;AMR_AF=0.76;AN=2;ASN_AF=0.92;AVGPOST=0.9985;ERATE=0.0012;EUR_AF=0.74;LDAF=0.7246;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +22 45312345 rs8135982 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.14;AMR_AF=0.07;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0734;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45579422 rs6006950 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.42;AMR_AF=0.53;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4506;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45595721 rs5765217 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.59;AMR_AF=0.67;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7230;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45598833 rs732373 C T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.21;AMR_AF=0.35;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.32;LDAF=0.3249;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45683246 rs2673088 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.24;AMR_AF=0.73;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.73;LDAF=0.5782;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 45683304 rs1057353 G C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.74;AVGPOST=0.9957;ERATE=0.0014;EUR_AF=0.73;LDAF=0.7618;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +22 45685002 rs1135360 A G 100 PASS AA=a;AC=1;AF=0.62;AFR_AF=0.90;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=0.9972;ERATE=0.0015;EUR_AF=0.42;LDAF=0.6169;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 45723854 rs9615108 C G 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.05;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.60;LDAF=0.3885;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45728596 rs73169241 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0064;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 45731182 rs738176 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.05;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.3939;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45732328 rs11704481 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.05;AMR_AF=0.45;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0054;EUR_AF=0.60;LDAF=0.4008;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45748339 rs5765275 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.51;LDAF=0.3490;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45749983 rs5764698 G T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.06;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3469;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45754558 rs5765281 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.51;LDAF=0.3574;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0102;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45755666 rs1012493 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3555;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45758758 rs719925 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3569;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 45767369 rs470062 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.12;AMR_AF=0.15;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1309;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 45767455 rs136569 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.94;AMR_AF=0.58;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.49;LDAF=0.6530;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 45779335 rs136585 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.94;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6514;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 45789642 rs136603 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 45789743 rs136604 T G 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1198;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +22 45794925 rs79154 C A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.91;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6454;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 45923827 rs136730 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9304;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 45931262 rs2071938 C T 100 PASS AA=c;AC=2;AF=0.78;AFR_AF=0.67;AMR_AF=0.69;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.86;LDAF=0.7803;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +22 46114398 rs138156 G T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.71;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4031;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 46449891 rs12159707 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.04;AVGPOST=0.9666;ERATE=0.0014;EUR_AF=0.33;LDAF=0.2530;RSQ=0.9397;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:1.650:-2.86,-0.46,-0.19 +22 46644168 rs9627281 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.73;AMR_AF=0.19;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2591;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46652737 rs6008362 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.61;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2148;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46652929 rs6008365 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.61;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46652959 rs4508712 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.91;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3520;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46654323 rs6007740 G A 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.62;AMR_AF=0.15;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2158;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46655779 rs36125344 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.07;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0754;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46655948 rs6008384 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.63;AMR_AF=0.15;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2187;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46656246 rs7291444 T G 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.57;AMR_AF=0.15;AN=2;AVGPOST=0.9990;ERATE=0.0035;EUR_AF=0.15;LDAF=0.2060;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46656479 rs6519993 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.63;AMR_AF=0.15;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2185;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46656511 rs9627324 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.63;AMR_AF=0.15;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2185;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46656607 rs8143066 G A 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.63;AMR_AF=0.15;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2185;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46656805 rs6519994 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.61;AMR_AF=0.14;AN=2;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.15;LDAF=0.2145;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46657261 rs6007747 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.63;AMR_AF=0.15;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2185;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46657798 rs6007748 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.62;AMR_AF=0.15;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2156;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46674603 rs135170 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9956;ERATE=0.0007;EUR_AF=0.08;LDAF=0.0456;RSQ=0.9575;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 46677607 rs130642 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 46679851 rs6008505 T G 100 PASS AA=t;AC=1;AF=0.15;AFR_AF=0.37;AMR_AF=0.14;AN=2;AVGPOST=0.9892;ERATE=0.0154;EUR_AF=0.13;LDAF=0.1532;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46681153 rs199903244 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.8383;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46682955 rs55926596 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0561;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.71 +22 46682976 rs55653327 C T 100 PASS AA=C;AC=1;AF=0.05;AMR_AF=0.07;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0527;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.70 +22 46684528 rs739165 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.07;AN=2;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0549;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46685274 rs11704586 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0568;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46685380 rs11705624 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0568;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46704243 rs6008598 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.37;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.13;LDAF=0.1474;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46704676 rs6008600 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.37;AMR_AF=0.10;AN=2;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1436;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46709881 rs6008622 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.31;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1285;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46712077 rs9615947 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0569;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46719100 rs6008684 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.27;AMR_AF=0.09;AN=2;AVGPOST=0.9996;ERATE=0.0045;EUR_AF=0.13;LDAF=0.1208;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46722400 rs140054 T C 100 PASS AA=C;AC=1;AF=0.95;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.92;LDAF=0.9531;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46722531 rs9615949 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.08;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0599;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46722560 rs6008700 C T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.56;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1988;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46724558 rs140053 T C 100 PASS AA=C;AC=1;AF=0.96;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9570;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46731689 rs11090865 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.09;AN=2;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1098;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.78,-0.08 +22 46731771 rs11090866 G C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.61;AMR_AF=0.16;AN=2;AVGPOST=0.9904;ERATE=0.0010;EUR_AF=0.17;LDAF=0.2266;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-0.81,-0.40,-0.35 +22 46731791 rs2272937 G A 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.82;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=0.9872;ERATE=0.0005;EUR_AF=0.23;LDAF=0.3119;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.64,-0.11 +22 46749634 rs9615956 C T 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0480;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46760086 rs35364389 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.44;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9990;ERATE=0.0016;EUR_AF=0.16;LDAF=0.1788;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46760481 rs9615351 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.54;AMR_AF=0.20;AN=2;ASN_AF=0.0017;AVGPOST=0.9973;ERATE=0.0026;EUR_AF=0.23;LDAF=0.2355;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46760665 rs9615352 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.06;AN=2;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0463;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.54,-0.15 +22 46761497 rs12165943 C G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.83;AMR_AF=0.20;AN=2;ASN_AF=0.0017;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2932;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +22 46762266 rs77823653 C T 100 PASS AA=N;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.06;AN=2;AVGPOST=0.9963;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0718;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.52 +22 46763757 rs76955646 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0431;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46929692 rs4823561 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.95;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9577;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 46930107 rs8141744 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.27;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1794;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 46931077 rs4823850 G C 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9051;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +22 46931793 rs1009154 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9477;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 46931838 rs1009155 G A 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9039;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +22 47058992 rs2542040 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9985;RSQ=0.9452;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 47064665 rs9616088 C T 100 PASS AA=N;AC=1;AF=0.31;AFR_AF=0.04;AMR_AF=0.42;AN=2;ASN_AF=0.38;AVGPOST=0.9985;ERATE=0.0037;EUR_AF=0.38;LDAF=0.3125;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 47064837 rs2076711 A C 100 PASS AA=a;AC=1;AF=0.28;AFR_AF=0.03;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0028;EUR_AF=0.30;LDAF=0.2754;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 47072477 rs2236028 G A 100 PASS AA=N;AC=1;AF=0.38;AFR_AF=0.16;AMR_AF=0.46;AN=2;ASN_AF=0.48;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3788;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.05 +22 47083010 rs2542014 T C 100 PASS AA=N;AC=2;AF=0.51;AFR_AF=0.72;AMR_AF=0.56;AN=2;ASN_AF=0.38;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5056;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 47083012 rs2748349 T A 100 PASS AA=N;AC=2;AF=0.48;AFR_AF=0.60;AMR_AF=0.56;AN=2;ASN_AF=0.38;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4786;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 47087670 rs36211083 G A 100 PASS AA=g;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1010;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 47097505 rs16995595 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.0017;AVGPOST=0.9912;ERATE=0.0028;EUR_AF=0.09;LDAF=0.1085;RSQ=0.9639;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.41 +22 47116905 rs12166204 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0916;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 47274638 rs131869 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.22;AMR_AF=0.65;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.76;LDAF=0.5736;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 47370343 rs4437 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9921;ERATE=0.0072;EUR_AF=0.23;LDAF=0.2215;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 49103660 rs132234 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7216;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50169205 rs916418 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.41;AMR_AF=0.05;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.02;LDAF=0.1322;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50169421 rs916419 T C 100 PASS AA=t;AC=1;AF=0.17;AFR_AF=0.54;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=0.9977;ERATE=0.0078;EUR_AF=0.03;LDAF=0.1688;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50192174 rs6009878 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.35;AMR_AF=0.05;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.02;LDAF=0.1184;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50277835 rs910796 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9260;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50277883 rs910797 A G 100 PASS AA=a;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9260;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50278438 rs910798 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9250;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50278568 rs910799 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.18;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6645;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50278642 rs910800 C T 100 PASS AA=c;AC=2;AF=0.66;AFR_AF=0.17;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6572;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50280136 rs5770755 T C 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.17;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6572;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50354819 rs11541025 C A 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.31;AVGPOST=0.9207;ERATE=0.0069;EUR_AF=0.30;LDAF=0.3386;RSQ=0.8601;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.69,-0.10 +22 50356302 rs28691713 C T 100 PASS AA=c;AC=1;AF=0.48;AFR_AF=0.54;AMR_AF=0.52;AN=2;ASN_AF=0.42;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4847;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50356555 rs4078443 T C 100 PASS AA=c;AC=2;AF=0.78;AFR_AF=0.76;AMR_AF=0.81;AN=2;ASN_AF=0.80;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.77;LDAF=0.7822;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +22 50356693 rs4077129 T C 100 PASS AA=t;AC=2;AF=0.78;AFR_AF=0.77;AMR_AF=0.81;AN=2;ASN_AF=0.80;AVGPOST=0.9888;ERATE=0.0043;EUR_AF=0.76;LDAF=0.7776;RSQ=0.9746;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +22 50435480 rs5771069 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.66;AMR_AF=0.49;AN=2;ASN_AF=0.54;AVGPOST=0.9976;ERATE=0.0033;EUR_AF=0.53;LDAF=0.5552;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50437976 rs7290572 G T 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9849;ERATE=0.0018;EUR_AF=0.34;LDAF=0.3577;RSQ=0.9724;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.04 +22 50439194 rs9617090 C T 100 PASS AA=c;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.29;AN=2;ASN_AF=0.35;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3080;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50439626 rs9617098 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0139;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +22 50454825 rs7292558 A G 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.54;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9442;ERATE=0.0326;EUR_AF=0.20;LDAF=0.3272;RSQ=0.9104;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 0|1:1.000:-3.70,-0.00,-5.00 +22 50468907 rs738333 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.71;AMR_AF=0.51;AN=2;ASN_AF=0.22;AVGPOST=0.8798;ERATE=0.0123;EUR_AF=0.54;LDAF=0.4960;RSQ=0.8618;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +22 50468933 rs79298 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.37;AN=2;ASN_AF=0.19;AVGPOST=0.9784;ERATE=0.0006;EUR_AF=0.35;LDAF=0.3297;RSQ=0.9635;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +22 50470516 rs11101958 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=0.9954;ERATE=0.0006;EUR_AF=0.20;LDAF=0.2156;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50480108 rs9628315 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.46;AMR_AF=0.33;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4176;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50483850 rs8138121 T C 100 PASS AA=t;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.13;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.41;LDAF=0.2487;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50499967 rs2072873 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1510;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50512617 rs2038048 C T 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.17;AMR_AF=0.40;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3127;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.58,-0.00 +22 50515808 rs2072874 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1627;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-1.01,-0.04 +22 50518723 rs79301 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9629;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.56,-0.01 +22 50528569 rs12628964 A T 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=0.9800;ERATE=0.0029;EUR_AF=0.23;LDAF=0.2445;RSQ=0.9565;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-0.48,-0.48,-0.48 +22 50530501 rs9617066 A T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.33;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2427;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50546666 rs3810971 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2404;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.74 +22 50547247 rs138217 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9945;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50553514 rs742183 A T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2404;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50555619 rs138222 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.93;AN=2;ASN_AF=0.91;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9163;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50555635 rs882753 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1412;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50555825 rs4838804 T A 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0689;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50566835 rs13055917 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2422;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50572473 rs2340601 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2427;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50573081 rs3736690 T G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2313;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50582550 rs2272836 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=0.9978;ERATE=0.0059;EUR_AF=0.17;LDAF=0.2170;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50582626 rs2272837 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.60;AVGPOST=0.9971;ERATE=0.0165;EUR_AF=0.23;LDAF=0.3315;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50584201 rs2272838 A C 100 PASS AA=a;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.36;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2478;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50588131 rs138271 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.01;AVGPOST=0.9955;ERATE=0.0149;EUR_AF=0.33;LDAF=0.1619;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50588153 rs2272840 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2464;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50599466 rs2272843 C A 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1321;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50616656 rs7286904 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.60;AVGPOST=0.9089;ERATE=0.0056;EUR_AF=0.89;LDAF=0.7943;RSQ=0.8147;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.69,-0.10 +22 50616806 rs5771206 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.52;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9077;ERATE=0.0122;EUR_AF=0.65;LDAF=0.5569;RSQ=0.8615;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.66,-4.70 +22 50635627 rs5771095 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.43;AMR_AF=0.34;AN=2;ASN_AF=0.36;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3742;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50644969 rs2294399 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.43;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9960;ERATE=0.0028;EUR_AF=0.39;LDAF=0.3900;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50646936 rs5771102 G C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.87;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=0.61;LDAF=0.7075;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50655098 rs2272851 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.90;AMR_AF=0.63;AN=2;ASN_AF=0.75;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7148;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.72,-0.09,-5.00 +22 50656428 rs35381394 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9864;ERATE=0.0032;EUR_AF=0.10;LDAF=0.0549;RSQ=0.9008;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50657010 rs4838864 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9981;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50658053 rs6537642 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.95;LDAF=0.9745;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50658424 rs11703226 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.46;AMR_AF=0.42;AN=2;ASN_AF=0.38;AVGPOST=0.9977;ERATE=0.0086;EUR_AF=0.44;LDAF=0.4250;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50664612 rs4838865 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.98;AMR_AF=0.71;AN=2;ASN_AF=0.83;AVGPOST=0.9992;ERATE=0.0021;EUR_AF=0.77;LDAF=0.8227;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50666507 rs55899818 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9874;ERATE=0.0101;EUR_AF=0.23;LDAF=0.2172;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50682865 rs5771270 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2911;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50684296 rs13058062 T C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.97;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=0.9943;ERATE=0.0024;EUR_AF=0.73;LDAF=0.8182;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.66,-0.11 +22 50688348 rs1555048 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.97;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8225;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50694297 rs1129880 A G 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.88;AMR_AF=0.77;AN=2;ASN_AF=0.86;AVGPOST=0.9936;ERATE=0.0075;EUR_AF=0.70;LDAF=0.7896;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50696662 rs73187284 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2901;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50699668 rs2272857 A G 100 PASS AA=g;AC=1;AF=0.68;AFR_AF=0.63;AMR_AF=0.79;AN=2;ASN_AF=0.58;AVGPOST=0.9869;ERATE=0.0012;EUR_AF=0.74;LDAF=0.6832;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.25,-0.35 +22 50704661 rs2076139 T C 100 PASS AA=N;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.80;AN=2;ASN_AF=0.59;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6983;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50705059 rs742185 A G 100 PASS AA=g;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.81;AN=2;ASN_AF=0.59;AVGPOST=0.9988;ERATE=0.0016;EUR_AF=0.75;LDAF=0.7002;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50705466 rs760748 A G 100 PASS AA=g;AC=2;AF=0.97;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9710;ERATE=0.0195;EUR_AF=0.97;LDAF=0.9612;RSQ=0.7061;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50714289 rs5771118 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.86;AMR_AF=0.84;AN=2;ASN_AF=0.67;AVGPOST=0.9669;ERATE=0.0078;EUR_AF=0.73;LDAF=0.7533;RSQ=0.9360;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50715029 rs5771119 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9909;ERATE=0.0024;EUR_AF=0.96;LDAF=0.9820;RSQ=0.8138;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50715973 rs28637964 G T 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.30;AMR_AF=0.34;AN=2;ASN_AF=0.54;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4524;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50716167 rs1127000 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.31;AMR_AF=0.46;AN=2;ASN_AF=0.61;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5053;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50717129 rs28718510 T G 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.35;AMR_AF=0.46;AN=2;ASN_AF=0.61;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5133;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.11 +22 50718397 rs28611220 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.54;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=0.9644;ERATE=0.0229;EUR_AF=0.59;LDAF=0.5772;RSQ=0.9431;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50719165 rs28540713 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.64;AMR_AF=0.50;AN=2;ASN_AF=0.47;AVGPOST=0.9831;ERATE=0.0032;EUR_AF=0.57;LDAF=0.5480;RSQ=0.9729;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +22 50719251 rs11547734 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.66;AMR_AF=0.51;AN=2;ASN_AF=0.61;AVGPOST=0.9915;ERATE=0.0010;EUR_AF=0.59;LDAF=0.5982;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50720181 rs28442189 C G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.35;AMR_AF=0.30;AN=2;ASN_AF=0.31;AVGPOST=0.9915;ERATE=0.0024;EUR_AF=0.44;LDAF=0.3630;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50720622 rs11547728 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.31;AVGPOST=0.9879;ERATE=0.0004;EUR_AF=0.48;LDAF=0.3770;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50721244 rs200925999 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9981;ERATE=0.0014;EUR_AF=0.0013;LDAF=0.0022;RSQ=0.6105;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50722134 rs11547731 T C 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.76;AMR_AF=0.59;AN=2;ASN_AF=0.53;AVGPOST=0.9197;ERATE=0.0462;EUR_AF=0.64;LDAF=0.6282;RSQ=0.8761;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50724190 rs28604596 G T 100 PASS AA=t;AC=2;AF=0.63;AFR_AF=0.73;AMR_AF=0.59;AN=2;ASN_AF=0.52;AVGPOST=0.9330;ERATE=0.0210;EUR_AF=0.68;LDAF=0.6236;RSQ=0.8881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-1.74,-0.01 +22 50724207 rs28553432 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.57;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1765;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50724733 rs55709850 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.17;AN=2;ASN_AF=0.33;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2782;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50725553 rs28513473 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.07;AN=2;ASN_AF=0.27;AVGPOST=0.9896;ERATE=0.0010;EUR_AF=0.10;LDAF=0.1633;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.62,-0.12 +22 50727921 rs28578714 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.49;AMR_AF=0.25;AN=2;ASN_AF=0.56;AVGPOST=0.9941;ERATE=0.0008;EUR_AF=0.40;LDAF=0.4366;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50728062 rs28379706 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.66;AMR_AF=0.27;AN=2;ASN_AF=0.56;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4794;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50728478 rs201664331 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0004;LDAF=0.0006;RSQ=0.7457;SNPSOURCE=EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +22 50750879 rs73439304 G A 100 PASS AA=g;AC=1;AF=0.09;AFR_AF=0.28;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0864;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.67 +22 50751529 rs67248662 G C 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.27;AVGPOST=0.9911;ERATE=0.0009;EUR_AF=0.31;LDAF=0.2835;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-3.85,-0.00,-5.00 +22 50752150 rs68178377 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.9781;ERATE=0.0040;EUR_AF=0.30;LDAF=0.2519;RSQ=0.9588;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50752169 rs73891220 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.27;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=0.9481;ERATE=0.0256;EUR_AF=0.34;LDAF=0.3150;RSQ=0.9089;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50753334 rs73439311 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.30;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9965;ERATE=0.0019;EUR_AF=0.39;LDAF=0.3443;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +22 50754445 rs80243206 A T 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0189;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50754466 rs62241230 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.27;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2992;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50754648 rs11553141 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.58;AMR_AF=0.39;AN=2;ASN_AF=0.42;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4519;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +22 50754772 rs73439316 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.23;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0768;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-1.73,-0.01,-5.00 +22 50756452 rs73439320 A G 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.24;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0773;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50757470 rs67488807 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.69;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4956;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.86,-0.01 +22 50869692 rs55712763 G C 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0202;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50876077 rs9306550 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.92;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=0.9992;ERATE=0.0020;EUR_AF=0.76;LDAF=0.8524;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-0.91,-0.06,-5.00 +22 50876235 rs5770779 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.62;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=0.9952;ERATE=0.0069;EUR_AF=0.74;LDAF=0.7709;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-1.81,-0.01,-5.00 +22 50876357 rs5770890 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.39;AMR_AF=0.70;AN=2;ASN_AF=0.84;AVGPOST=0.9955;ERATE=0.0047;EUR_AF=0.66;LDAF=0.6524;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.30 +22 50876662 rs11555194 T G 100 PASS AA=t;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.03;LDAF=0.0366;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50877166 rs4824131 G C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.47;AMR_AF=0.73;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7032;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.75,-0.08,-5.00 +22 50926768 rs2232883 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0973;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 50928331 rs2232887 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.23;AMR_AF=0.24;AN=2;ASN_AF=0.40;AVGPOST=0.9804;ERATE=0.0026;EUR_AF=0.06;LDAF=0.2223;RSQ=0.9625;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.85 +22 50956142 rs2269388 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=0.9987;ERATE=0.0019;LDAF=0.0260;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50961169 rs131813 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.88;AMR_AF=0.81;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8473;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +22 50961854 rs2782 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.66;AMR_AF=0.57;AN=2;ASN_AF=0.71;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6382;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.22,-0.00 +22 50962208 rs12148 T G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.67;AMR_AF=0.57;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6412;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50962782 rs140523 C G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.65;AMR_AF=0.57;AN=2;ASN_AF=0.71;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6381;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50964153 rs131805 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.87;AMR_AF=0.81;AN=2;ASN_AF=0.97;AVGPOST=0.9948;ERATE=0.0008;EUR_AF=0.76;LDAF=0.8476;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +22 50964862 rs131804 G A 100 PASS AA=g;AC=2;AF=0.54;AFR_AF=0.31;AMR_AF=0.52;AN=2;ASN_AF=0.70;AVGPOST=0.9917;ERATE=0.0007;EUR_AF=0.56;LDAF=0.5355;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.62,-0.51,-0.16 +22 50966914 rs470119 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.32;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5549;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 50987287 rs5770886 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.54;AMR_AF=0.37;AN=2;ASN_AF=0.41;AVGPOST=0.9550;ERATE=0.0071;EUR_AF=0.18;LDAF=0.3524;RSQ=0.9283;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.800:-0.48,-0.48,-0.48 +22 50988062 rs140519 G T 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.20;AMR_AF=0.44;AN=2;ASN_AF=0.58;AVGPOST=0.9967;ERATE=0.0024;EUR_AF=0.48;LDAF=0.4374;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 50988193 rs131779 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.57;AMR_AF=0.53;AN=2;ASN_AF=0.59;AVGPOST=0.9956;ERATE=0.0020;EUR_AF=0.64;LDAF=0.5912;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.82 +22 51009953 rs470117 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.12;AMR_AF=0.43;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3752;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 51011936 rs131760 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.81;AMR_AF=0.72;AN=2;ASN_AF=0.97;AVGPOST=0.9941;ERATE=0.0028;EUR_AF=0.64;LDAF=0.7738;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 51015481 rs131759 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.47;LDAF=0.3779;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 51018579 rs140514 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.12;AMR_AF=0.44;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3857;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 51020668 rs86337 C A 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.56;AMR_AF=0.68;AN=2;ASN_AF=0.98;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.56;LDAF=0.6875;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.84,-0.07 +22 51063987 rs79129659 G C 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8191;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 51064039 rs743616 G C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0042;EUR_AF=0.51;LDAF=0.4255;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 51064141 rs762673 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.67;AMR_AF=0.80;AN=2;ASN_AF=0.97;AVGPOST=0.9946;ERATE=0.0049;EUR_AF=0.77;LDAF=0.8022;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +22 51064416 rs2071421 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9978;ERATE=0.0022;EUR_AF=0.13;LDAF=0.2092;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +22 51065229 rs6151416 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0325;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 51065600 rs6151412 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.11;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0480;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +22 51133518 rs13055562 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.33;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.53;LDAF=0.3779;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.05,-0.95 +22 51137249 rs1557620 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.79;AMR_AF=0.81;AN=2;ASN_AF=0.64;AVGPOST=0.9952;ERATE=0.0018;EUR_AF=0.82;LDAF=0.7622;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +22 51182485 rs6009961 A G 100 PASS AA=N;AC=1;AF=0.58;AFR_AF=0.81;AMR_AF=0.59;AN=2;ASN_AF=0.32;AVGPOST=0.8990;ERATE=0.0338;EUR_AF=0.61;LDAF=0.5549;RSQ=0.8796;SNPSOURCE=LOWCOV,EXOME;THETA=0.0131;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +22 51183255 rs5771002 A G 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.55;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.8735;ERATE=0.0320;EUR_AF=0.62;LDAF=0.6282;RSQ=0.7819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0096;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +21 10906989 rs210498 C T 100 PASS AA=.;AC=1;AF=0.23;AFR_AF=0.43;AMR_AF=0.15;AN=2;ASN_AF=0.25;AVGPOST=0.9986;ERATE=0.0017;EUR_AF=0.12;LDAF=0.2273;RSQ=0.9958;SNPSOURCE=EXOME;THETA=0.0078;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 10910291 rs150480 C T 100 PASS AA=.;AC=1;AF=0.58;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.54;AVGPOST=0.9771;ERATE=0.0141;EUR_AF=0.47;LDAF=0.5749;RSQ=0.9410;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 10910347 rs150482 A G 100 PASS AA=.;AC=1;AF=0.84;AFR_AF=0.96;AMR_AF=0.71;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0006;EUR_AF=0.70;LDAF=0.8361;RSQ=0.9896;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 10916322 rs210506 G A 100 PASS AA=.;AC=1;AF=0.39;AFR_AF=0.54;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=0.9639;ERATE=0.0206;EUR_AF=0.28;LDAF=0.3886;RSQ=0.8870;SNPSOURCE=EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 10920041 rs4913553 C T 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.36;AMR_AF=0.37;AN=2;ASN_AF=0.38;AVGPOST=0.9786;ERATE=0.0013;EUR_AF=0.32;LDAF=0.3531;RSQ=0.9251;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 10920067 rs4913681 T C 100 PASS AA=.;AC=1;AF=0.36;AFR_AF=0.38;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9790;ERATE=0.0069;EUR_AF=0.32;LDAF=0.3609;RSQ=0.9273;SNPSOURCE=EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 10920098 rs212146 T C 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.95;AN=2;ASN_AF=0.94;AVGPOST=0.9758;ERATE=0.0213;EUR_AF=0.93;LDAF=0.9195;RSQ=0.8727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.22,-0.00 +21 10920176 rs62211225 G T 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9714;ERATE=0.0224;EUR_AF=0.30;LDAF=0.2753;RSQ=0.9172;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +21 10933986 rs4913855 C G 100 PASS AA=.;AC=1;AF=0.06;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9817;ERATE=0.0037;EUR_AF=0.01;LDAF=0.0614;RSQ=0.8786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:0.950:-2.98,-0.00,-5.00 +21 10953012 rs210537 A G 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.48;AMR_AF=0.16;AN=2;ASN_AF=0.23;AVGPOST=0.9765;ERATE=0.0019;EUR_AF=0.12;LDAF=0.2347;RSQ=0.9362;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 10959806 rs212111 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.51;AMR_AF=0.17;AN=2;ASN_AF=0.26;AVGPOST=0.9893;ERATE=0.0055;EUR_AF=0.12;LDAF=0.2559;RSQ=0.9739;SNPSOURCE=EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 15481365 rs7278737 G T 100 PASS AA=t;AC=2;AF=0.50;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 15516976 rs7283442 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 15524921 rs74369337 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0932;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 15593495 rs378280 T G 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.38;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2364;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 15596772 rs409782 T G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.75;AMR_AF=0.73;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7725;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +21 15596882 rs410052 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.89;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8080;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +21 15748186 rs2822642 C A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.83;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6997;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 15893567 rs760344 A T 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.10;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1891;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 16340289 rs2229741 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.71;AMR_AF=0.55;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0027;EUR_AF=0.39;LDAF=0.5920;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 18933828 rs2824359 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1787;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 19165942 rs2824493 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2932;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +21 19169155 rs1047978 G C 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.37;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2999;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 19666910 rs2824718 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.07;AMR_AF=0.45;AN=2;ASN_AF=0.55;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3931;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 19670118 rs2824721 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.65;AMR_AF=0.74;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7039;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 19685405 rs7281534 A G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.25;AMR_AF=0.33;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.36;LDAF=0.3359;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 19756040 rs2824790 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2385;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 22696837 rs232467 C G 100 PASS AA=c;AC=1;AF=0.63;AFR_AF=0.52;AMR_AF=0.63;AN=2;ASN_AF=0.59;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6328;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 22746187 rs232518 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.36;AMR_AF=0.31;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3972;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 22910123 rs9979040 T G 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.49;AMR_AF=0.52;AN=2;ASN_AF=0.19;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.48;LDAF=0.4115;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 26965100 rs2829809 C A 100 PASS AA=c;AC=2;AF=0.64;AFR_AF=0.47;AMR_AF=0.66;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.6449;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +21 26965148 rs1135638 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.72;AMR_AF=0.80;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7609;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +21 26965205 rs1057885 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.72;AMR_AF=0.80;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7609;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 26966317 rs13048408 A G 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.33;AMR_AF=0.53;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.73;LDAF=0.4533;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +21 26969703 rs1135618 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.72;AMR_AF=0.80;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7619;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 26976250 rs7278164 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.73;LDAF=0.4775;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 26978950 rs3989369 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.75;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9139;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 27326859 rs2829997 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.15;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5162;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 27840793 rs17002187 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0672;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 27852724 rs966410 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.61;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0013;EUR_AF=0.44;LDAF=0.4264;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 28212760 rs436525 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.72;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5656;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 28216595 rs428785 C G 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.92;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.74;LDAF=0.6611;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +21 28216674 rs409630 G C 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9763;ERATE=0.0008;EUR_AF=0.19;LDAF=0.1683;RSQ=0.9419;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +21 28216692 rs445784 G T 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.88;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.74;LDAF=0.6520;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.09,-0.04 +21 28217178 rs434857 T G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.92;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.74;LDAF=0.6616;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +21 28217320 rs402007 C G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.92;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9977;ERATE=0.0006;EUR_AF=0.74;LDAF=0.6627;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.39,-0.00 +21 28296324 rs151065 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.98;AMR_AF=0.73;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7724;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 28302355 rs226794 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.98;AMR_AF=0.74;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7770;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 28305324 rs146717299 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 30250555 rs2205446 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 30250615 rs2205447 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 30255347 rs61735765 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1207;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 30257560 rs1997606 C G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.83;AMR_AF=0.73;AN=2;ASN_AF=0.50;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7412;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 30257568 rs1997607 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 30408670 rs2274802 A T 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.18;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1714;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 30445961 rs2012645 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.33;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2875;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 30464916 rs2832170 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.38;AMR_AF=0.26;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.3030;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 30714776 rs388707 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.67;AMR_AF=0.53;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5178;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 31587793 rs686364 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.69;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.26;LDAF=0.4044;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31587859 rs685967 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.17;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0025;EUR_AF=0.04;LDAF=0.0609;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31654809 rs77638540 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.14;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0526;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31655212 rs1557291 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9998;RSQ=0.1069;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 31692277 rs3804007 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.19;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0786;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31692377 rs3804008 A C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.45;AMR_AF=0.18;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2065;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31709691 rs2244485 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3085;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 31744127 rs877346 A T 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3093;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 31744163 rs2009546 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.08;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0386;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31802768 rs2226548 G A 100 PASS AA=-;AC=1;AF=0.52;AFR_AF=0.66;AMR_AF=0.65;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5242;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31812772 rs2832873 C A 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.67;AMR_AF=0.65;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5274;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31859677 rs6516970 G A 100 PASS AA=-;AC=1;AF=0.53;AFR_AF=0.65;AMR_AF=0.64;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5288;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31869286 rs2298437 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.84;AMR_AF=0.67;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5704;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31914000 rs1023364 T A 100 PASS AA=t;AC=1;AF=0.73;AFR_AF=0.79;AMR_AF=0.72;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7267;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 31973405 rs198914 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2487;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 31973516 rs198915 T A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8168;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 31973525 rs724849 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.05;LDAF=0.0249;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 32493031 rs762194 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.54;AMR_AF=0.59;AN=2;ASN_AF=0.75;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5803;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 32493204 rs2073371 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.21;AMR_AF=0.56;AN=2;ASN_AF=0.62;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4503;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 32499473 rs2070410 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.78;AMR_AF=0.64;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.48;LDAF=0.6051;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 32526525 rs12482307 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.27;AN=2;ASN_AF=0.23;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.37;LDAF=0.2529;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 32638549 rs2070417 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9962;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1609;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 32638550 rs2070418 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9961;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1604;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 33044378 rs73201505 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0106;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 33068962 rs7280330 T C 100 PASS AA=t;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.13;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1495;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 33074633 rs2202128 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0151;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 33368188 rs2070371 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.66;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7043;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 33370900 rs9305483 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.57;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6202;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 33371123 rs10775648 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2093;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 33371540 rs2070372 T G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.57;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0023;EUR_AF=0.77;LDAF=0.6861;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 33980042 rs140374402 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.01;LDAF=0.0059;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34399401 rs762178 A G 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.47;AMR_AF=0.54;AN=2;ASN_AF=0.18;AVGPOST=0.9988;ERATE=0.0020;EUR_AF=0.58;LDAF=0.4456;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.89,-0.01 +21 34617213 rs2834158 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.84;AMR_AF=0.56;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6179;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 34624917 rs2236757 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.82;AMR_AF=0.57;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6303;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +21 34638859 rs2239573 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.46;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9642;ERATE=0.0012;EUR_AF=0.69;LDAF=0.6611;RSQ=0.9420;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:1.850:-5.00,-0.94,-0.05 +21 34707808 rs2243592 T G 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.31;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3662;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34721348 rs2834196 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1555;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34726127 rs2856973 T A 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.86;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.73;LDAF=0.8487;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 34799350 rs11910627 C G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.86;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8374;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34878450 rs2070390 A T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.26;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1915;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34883618 rs8971 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1747;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34892896 rs2834232 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1747;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34894605 rs79087417 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.06;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0531;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34894623 rs2834234 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.90;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34897113 rs8788 C T 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.90;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8707;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34924243 rs16990760 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.27;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1979;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34925142 rs13433428 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 34925689 rs61739710 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.30;LDAF=0.1929;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34926260 rs13047599 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.76;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7148;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34929422 rs2070389 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2061;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 34945721 rs3174808 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.28;AN=2;ASN_AF=0.26;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.34;LDAF=0.2885;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 35124253 rs2834255 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.89;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8894;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.11,-0.00 +21 35237608 rs9976801 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.93;AMR_AF=0.65;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8066;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.37,-0.02 +21 35260481 rs2073370 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.43;AMR_AF=0.51;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5559;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 35275955 rs9980730 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9890;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 35279604 rs62226670 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1440;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 35281393 rs4591 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.74;AMR_AF=0.60;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6814;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 35284734 rs2211873 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.74;AMR_AF=0.60;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6819;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 35286740 rs12626438 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1161;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 35467645 rs8129891 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 35469193 rs4817617 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 35821821 rs17846179 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.75;AMR_AF=0.63;AN=2;ASN_AF=0.69;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6676;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 36041638 rs73357389 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.44;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=0.9941;ERATE=0.0007;EUR_AF=0.22;LDAF=0.2464;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:0.750:-0.11,-0.67,-4.70 +21 36041978 rs7280973 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9977;RSQ=0.4077;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +21 36042203 rs9680380 G C 100 PASS AA=-;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9959;RSQ=0.6293;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.14,-0.48,-0.18 +21 36042492 rs13048804 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.23;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.8694;ERATE=0.0124;EUR_AF=0.18;LDAF=0.1981;RSQ=0.6873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:0.800:-0.48,-0.48,-0.48 +21 36042579 rs13049028 C G 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=0.9894;ERATE=0.0008;EUR_AF=0.22;LDAF=0.2003;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:0.800:-0.17,-0.50,-2.87 +21 36042584 rs13049239 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.24;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=0.9917;ERATE=0.0006;EUR_AF=0.22;LDAF=0.1966;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:0.800:-0.17,-0.49,-2.84 +21 36080204 rs6517253 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9863;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 36080290 rs6517254 C T 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.62;AMR_AF=0.29;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3566;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 36080398 rs2070368 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4405;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 36081626 rs3819041 C G 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.49;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4420;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 36164405 rs13051066 G T 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.22;AMR_AF=0.40;AN=2;ASN_AF=0.35;AVGPOST=0.9214;ERATE=0.0045;EUR_AF=0.46;LDAF=0.3699;RSQ=0.8736;SNPSOURCE=LOWCOV,EXOME;THETA=0.0075;VT=SNP GT:DS:GL 1|0:1.050:-0.48,-0.48,-0.48 +21 36206932 rs11702841 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 37425955 rs762360 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.80;AMR_AF=0.81;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6984;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 37507501 rs8133052 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.27;AMR_AF=0.45;AN=2;ASN_AF=0.43;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.45;LDAF=0.4052;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.74,-0.01 +21 37507745 rs881711 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.73;AMR_AF=0.78;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8195;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +21 37507769 rs881712 C T 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.08;AMR_AF=0.42;AN=2;ASN_AF=0.43;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.44;LDAF=0.3554;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.44,-0.00 +21 37518362 rs2835286 A G 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7893;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 37617630 rs4817788 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9324;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 37617724 rs3746866 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.14;LDAF=0.1627;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 37623447 rs2298450 C T 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.53;AMR_AF=0.37;AN=2;ASN_AF=0.30;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3781;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 37650235 rs2070517 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.39;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9993;ERATE=0.0010;EUR_AF=0.41;LDAF=0.3859;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 37653942 rs73902193 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9978;ERATE=0.0027;EUR_AF=0.12;LDAF=0.1275;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 37660268 rs74949130 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1938;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 37661405 rs3827183 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.12;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1211;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 37664571 rs9978153 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.35;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9867;ERATE=0.0143;EUR_AF=0.34;LDAF=0.3386;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 37769852 rs73902504 A G 100 PASS AA=A;AC=2;AF=0.13;AFR_AF=0.31;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +21 37833307 rs219780 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.25;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1522;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 37833751 rs219779 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2034;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 38081562 rs2070647 T G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.94;AMR_AF=0.69;AN=2;ASN_AF=0.65;AVGPOST=0.9869;ERATE=0.0013;EUR_AF=0.73;LDAF=0.7485;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.42,-0.01,-1.71 +21 38081577 rs2070648 C G 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.86;AMR_AF=0.67;AN=2;ASN_AF=0.65;AVGPOST=0.9510;ERATE=0.0056;EUR_AF=0.69;LDAF=0.7017;RSQ=0.9078;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.48 +21 38132172 rs2073420 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.34;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3579;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 38139632 rs2073421 C A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.70;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6432;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 38302769 rs2073425 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.48;AMR_AF=0.65;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5700;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 38444863 rs2507733 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 38444890 rs2298682 A G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.29;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3902;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 38462614 rs3787780 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4104;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 38466261 rs3753070 T A 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.53;LDAF=0.4224;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 38467616 rs2006941 C A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4241;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 38468958 rs2835600 A G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4245;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 38501279 rs2835617 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0960;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 38512956 rs1133001 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.64;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5677;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 38525356 rs1053808 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.71;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6103;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 38568009 rs1053966 G C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.91;AMR_AF=0.71;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.7221;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 38568308 rs6579 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.64;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5672;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 38850640 rs928763 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9095;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 38997701 rs702859 G A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7800;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 39086965 rs2070995 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.99;AMR_AF=0.80;AN=2;ASN_AF=0.64;AVGPOST=0.9970;ERATE=0.0008;EUR_AF=0.81;LDAF=0.8025;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 39213020 rs2836016 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.64;AMR_AF=0.61;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.59;LDAF=0.6591;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 39671476 rs2230033 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.05;AMR_AF=0.46;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3338;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 39762883 rs2246468 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0964;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 39870310 rs2836441 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=0.9959;ERATE=0.0016;EUR_AF=0.88;LDAF=0.8752;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40190620 rs10854389 C G 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2539;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40191431 rs457705 T G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.57;AMR_AF=0.63;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.6367;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40191638 rs461155 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.57;AMR_AF=0.63;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.6362;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +21 40552307 rs3171465 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4625;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40571246 rs1041439 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.97;AMR_AF=0.94;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40574305 rs2183573 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.58;AMR_AF=0.69;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5996;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40584598 rs6517529 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8454;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40642189 rs6517532 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8446;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40650621 rs973521 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8405;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40652040 rs2836971 A C 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.54;AMR_AF=0.69;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5910;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40670460 rs2056844 G C 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.41;AMR_AF=0.57;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4680;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40684861 rs2297258 C G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.94;AN=2;ASN_AF=0.56;AVGPOST=0.9978;ERATE=0.0008;EUR_AF=0.91;LDAF=0.8375;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.11,-0.03 +21 40684975 rs35687055 C T 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.43;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9483;ERATE=0.0024;EUR_AF=0.29;LDAF=0.3173;RSQ=0.9059;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-2.27,-0.42,-0.21 +21 40685239 rs34240248 A G 100 PASS AA=N;AC=2;AF=0.61;AFR_AF=0.67;AMR_AF=0.69;AN=2;ASN_AF=0.53;AVGPOST=0.9942;ERATE=0.0007;EUR_AF=0.59;LDAF=0.6106;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.95,-0.00 +21 40685246 rs34436313 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.63;AMR_AF=0.69;AN=2;ASN_AF=0.53;AVGPOST=0.9872;ERATE=0.0029;EUR_AF=0.59;LDAF=0.5954;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.93,-0.01 +21 40715132 rs2070867 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40778319 rs201717530 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 40823981 rs6517549 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9840;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 40871810 rs9974333 T C 100 PASS AA=.;AC=1;AF=0.54;AFR_AF=0.39;AMR_AF=0.58;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5443;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 41032740 rs3746887 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.38;AMR_AF=0.76;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6571;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 41032804 rs734413 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.33;AMR_AF=0.75;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.82;LDAF=0.6435;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 41137416 rs8129909 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.16;AMR_AF=0.04;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0955;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 41142932 rs8129968 C T 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.18;AMR_AF=0.04;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1008;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 41434841 rs2837409 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.31;AMR_AF=0.36;AN=2;ASN_AF=0.51;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.25;LDAF=0.3488;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 42622657 rs960231 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.86;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.61;LDAF=0.7774;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 42622786 rs1046210 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.10;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4086;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 42717662 rs417708 T C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8952;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 42767733 rs440364 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.67;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8679;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 42775180 rs459763 C T 100 PASS AA=T;AC=1;AF=0.92;AFR_AF=0.88;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.90;LDAF=0.9212;RSQ=0.9979;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 42812891 rs467960 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.34;AMR_AF=0.46;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3631;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 42817930 rs469390 G A 100 PASS AA=g;AC=2;AF=0.43;AFR_AF=0.44;AMR_AF=0.46;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4327;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 42818106 rs467773 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.44;AMR_AF=0.46;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4327;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.75,-0.01 +21 42824733 rs469304 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.51;LDAF=0.2700;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 42845383 rs17854725 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.33;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9953;ERATE=0.0013;EUR_AF=0.55;LDAF=0.3688;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-3.85,-0.00,-5.00 +21 42860307 rs422471 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.57;AMR_AF=0.56;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5361;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 42860485 rs386416 G C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.57;AMR_AF=0.56;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5370;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.75,-0.00 +21 43161022 rs7276592 C T 100 PASS AA=c;AC=2;AF=0.47;AFR_AF=0.28;AMR_AF=0.49;AN=2;ASN_AF=0.62;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4746;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +21 43161357 rs3746891 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.91;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.98;LDAF=0.9659;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43161805 rs2838113 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.26;AMR_AF=0.61;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5520;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43161877 rs3746893 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.28;AMR_AF=0.49;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4661;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43162150 rs3746894 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.28;AMR_AF=0.49;AN=2;ASN_AF=0.59;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4660;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43162200 rs3746895 T C 100 PASS AA=t;AC=2;AF=0.58;AFR_AF=0.65;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5791;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43164232 rs2277789 C A 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.23;AMR_AF=0.45;AN=2;ASN_AF=0.50;AVGPOST=0.9983;ERATE=0.0026;EUR_AF=0.46;LDAF=0.4148;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43164345 rs2277790 A C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.71;AMR_AF=0.70;AN=2;ASN_AF=0.63;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.73;LDAF=0.6910;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +21 43221483 rs3850706 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9977;RSQ=0.9626;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43239972 rs28477638 A G 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=0.69;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8424;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +21 43256172 rs17766525 T C 100 PASS AA=t;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0161;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43256252 rs4920098 C T 100 PASS AA=c;AC=2;AF=0.54;AFR_AF=0.44;AMR_AF=0.68;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5361;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43258000 rs8127003 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8601;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43267260 rs2277793 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.56;AMR_AF=0.73;AN=2;ASN_AF=0.48;AVGPOST=0.9971;ERATE=0.0014;EUR_AF=0.70;LDAF=0.6166;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +21 43298846 rs143393748 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.08;AN=2;AVGPOST=0.9945;ERATE=0.0006;EUR_AF=0.12;LDAF=0.0611;RSQ=0.9636;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.43 +21 43309191 rs2839403 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.22;AMR_AF=0.37;AN=2;ASN_AF=0.48;AVGPOST=0.9988;ERATE=0.0026;EUR_AF=0.57;LDAF=0.4339;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +21 43327793 rs3746904 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.35;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9969;ERATE=0.0076;EUR_AF=0.35;LDAF=0.3652;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 43327856 rs3746906 A G 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.64;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6258;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43413553 rs871546 T G 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.15;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1696;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43413651 rs871545 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1083;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43413731 rs915837 C T 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.71;AMR_AF=0.56;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6778;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43496381 rs220286 G T 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.53;AN=2;ASN_AF=0.20;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4559;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43504228 rs7278485 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.74;AMR_AF=0.60;AN=2;ASN_AF=0.54;AVGPOST=0.9917;ERATE=0.0018;EUR_AF=0.61;LDAF=0.6220;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 43505436 rs73371577 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.17;AVGPOST=0.9970;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0680;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 43519032 rs220312 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3009;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43522349 rs220109 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.49;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5497;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43523941 rs220111 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.18;AMR_AF=0.35;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3258;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43529819 rs11203186 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.36;AVGPOST=0.9876;ERATE=0.0008;EUR_AF=0.20;LDAF=0.2075;RSQ=0.9719;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43531008 rs220126 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.58;AMR_AF=0.83;AN=2;ASN_AF=0.88;AVGPOST=0.9947;ERATE=0.0038;EUR_AF=0.82;LDAF=0.7817;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43531403 rs220127 C G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.43;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=0.9891;ERATE=0.0016;EUR_AF=0.82;LDAF=0.7410;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.07 +21 43531553 rs220128 A C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.19;AMR_AF=0.50;AN=2;ASN_AF=0.51;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4525;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43531632 rs220129 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.59;AMR_AF=0.85;AN=2;ASN_AF=0.84;AVGPOST=0.9930;ERATE=0.0056;EUR_AF=0.84;LDAF=0.7831;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43531848 rs220131 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.20;AMR_AF=0.47;AN=2;ASN_AF=0.47;AVGPOST=0.9954;ERATE=0.0017;EUR_AF=0.56;LDAF=0.4417;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43541342 rs220150 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.69;AN=2;ASN_AF=0.62;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6128;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 43547165 rs80040922 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.22;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0768;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 43547788 rs220158 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.78;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.90;LDAF=0.8351;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43547873 rs220159 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.33;AMR_AF=0.43;AN=2;ASN_AF=0.38;AVGPOST=0.9983;ERATE=0.0016;EUR_AF=0.35;LDAF=0.3661;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 43557559 rs3819141 T A 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3333;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43557698 rs3819142 A C 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.21;AN=2;ASN_AF=0.23;AVGPOST=0.9990;ERATE=0.0015;EUR_AF=0.17;LDAF=0.1844;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43557736 rs220178 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.13;AMR_AF=0.40;AN=2;ASN_AF=0.53;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3705;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 43557759 rs3819144 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9894;ERATE=0.0056;EUR_AF=0.17;LDAF=0.1759;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43557778 rs117512190 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.17;AVGPOST=0.9863;ERATE=0.0035;EUR_AF=0.18;LDAF=0.1432;RSQ=0.9605;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.68,-0.10 +21 43640066 rs9975490 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.24;AVGPOST=0.9962;ERATE=0.0007;EUR_AF=0.17;LDAF=0.1719;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-0.06,-0.87,-5.00 +21 43640169 rs4148100 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.21;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1600;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.15 +21 43640183 rs4148101 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.21;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1600;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43704650 rs2234719 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=0.9947;ERATE=0.0015;EUR_AF=0.26;LDAF=0.2502;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43782547 rs13276 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0352;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.24 +21 43786512 rs225358 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.46;AMR_AF=0.67;AN=2;ASN_AF=0.23;AVGPOST=0.9977;ERATE=0.0009;EUR_AF=0.68;LDAF=0.5108;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +21 43792869 rs13047838 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2697;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43805637 rs2839501 C T 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.85;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4418;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43805656 rs8130564 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.89;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5873;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43852232 rs13052676 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.20;AMR_AF=0.29;AN=2;ASN_AF=0.22;AVGPOST=0.9988;ERATE=0.0051;EUR_AF=0.34;LDAF=0.2710;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43852355 rs2839513 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0051;EUR_AF=0.24;LDAF=0.1929;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43854985 rs17114925 A C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.52;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2564;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43855067 rs1893592 A C 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.05;AMR_AF=0.27;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2130;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 43863521 rs868092 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.54;AMR_AF=0.64;AN=2;ASN_AF=0.45;AVGPOST=0.9827;ERATE=0.0324;EUR_AF=0.63;LDAF=0.5641;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +21 43896143 rs117385282 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.17;LDAF=0.0875;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 43897355 rs11702140 C T 100 PASS AA=c;AC=2;AF=0.65;AFR_AF=0.63;AMR_AF=0.78;AN=2;ASN_AF=0.54;AVGPOST=0.9459;ERATE=0.0665;EUR_AF=0.70;LDAF=0.6527;RSQ=0.9089;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.73,-0.01 +21 43905887 rs2839536 C T 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.12;AMR_AF=0.57;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=0.37;LDAF=0.2952;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43916339 rs1573413 G A 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.10;AMR_AF=0.57;AN=2;ASN_AF=0.18;AVGPOST=0.9982;ERATE=0.0014;EUR_AF=0.37;LDAF=0.2917;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +21 43959770 rs228063 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6892;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43963759 rs228075 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7932;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43985955 rs228104 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.88;LDAF=0.8076;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 43988437 rs7280392 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.29;AMR_AF=0.63;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4113;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +21 44107989 rs2839574 A G 100 PASS AA=N;AC=1;AF=0.78;AFR_AF=0.96;AMR_AF=0.61;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7827;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 44152149 rs2269153 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3680;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 44163839 rs6586344 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9795;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +21 44180443 rs13047953 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.41;AVGPOST=0.9982;ERATE=0.0035;EUR_AF=0.47;LDAF=0.3202;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 44430325 rs234781 T C 100 PASS AA=T;AC=1;AF=0.85;AFR_AF=0.92;AMR_AF=0.81;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8528;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 44437142 rs3737434 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.42;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4010;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 44515504 rs4920040 T C 100 PASS AA=t;AC=2;AF=0.37;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3710;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +21 44515685 rs2839634 T C 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3716;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 44837551 rs430552 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.48;AMR_AF=0.85;AN=2;ASN_AF=0.88;AVGPOST=0.9686;ERATE=0.0078;EUR_AF=0.78;LDAF=0.7454;RSQ=0.9431;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.850:-2.89,-0.46,-0.19 +21 44837555 rs430554 G A 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.73;AMR_AF=0.88;AN=2;ASN_AF=0.88;AVGPOST=0.9493;ERATE=0.0155;EUR_AF=0.87;LDAF=0.8292;RSQ=0.8624;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.050:-0.17,-0.49,-2.64 +21 45064296 rs2246602 C A 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.60;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6628;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45076443 rs2838341 A G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.51;AMR_AF=0.63;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6260;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45089877 rs2838344 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.47;AMR_AF=0.67;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6411;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45092257 rs2251253 T A 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.47;AMR_AF=0.67;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45096206 rs2155722 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.47;AMR_AF=0.69;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6508;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45107518 rs7279959 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.83;AVGPOST=0.9961;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9552;RSQ=0.9682;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45107562 rs9306160 T C 100 PASS AA=t;AC=2;AF=0.77;AFR_AF=0.96;AMR_AF=0.75;AN=2;ASN_AF=0.83;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.60;LDAF=0.7675;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45168884 rs11539534 G A 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.09;LDAF=0.1310;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45175958 rs7527 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.47;AMR_AF=0.63;AN=2;ASN_AF=0.73;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5760;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +21 45215046 rs2838371 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.75;AMR_AF=0.64;AN=2;ASN_AF=0.80;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.41;LDAF=0.6283;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45215051 rs2838372 A G 100 PASS AA=a;AC=1;AF=0.35;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.56;AVGPOST=0.9969;ERATE=0.0018;EUR_AF=0.26;LDAF=0.3513;RSQ=0.9952;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45215055 rs2838373 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9956;ERATE=0.0044;EUR_AF=0.16;LDAF=0.2323;RSQ=0.9909;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45217456 rs2070537 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.47;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2817;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45217559 rs2838378 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.80;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.42;LDAF=0.6436;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45217753 rs2070538 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.57;AMR_AF=0.28;AN=2;ASN_AF=0.24;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2889;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45217929 rs2838379 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.62;AMR_AF=0.31;AN=2;ASN_AF=0.33;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3491;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45219524 rs4566449 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.42;AMR_AF=0.28;AN=2;ASN_AF=0.32;AVGPOST=0.9973;ERATE=0.0014;EUR_AF=0.21;LDAF=0.2975;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45220483 rs915770 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2294;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45220787 rs2329576 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45379560 rs148304388 G A 100 PASS AA=G;AC=2;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0070;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45494183 rs2277805 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2116;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45503121 rs2071152 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.64;AMR_AF=0.26;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.3181;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45506819 rs1131999 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.73;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.17;LDAF=0.3480;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45514149 rs9941801 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=0.9797;ERATE=0.0327;EUR_AF=0.95;LDAF=0.9567;RSQ=0.8202;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45518223 rs148696190 C T 100 PASS AA=C;AC=2;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0105;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45518436 rs141376279 G A 100 PASS AA=G;AC=2;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0073;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45655124 rs2070557 A T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.55;AMR_AF=0.36;AN=2;ASN_AF=0.47;AVGPOST=0.9951;ERATE=0.0006;EUR_AF=0.29;LDAF=0.4063;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +21 45669027 rs58387967 G T 100 PASS AA=G;AC=2;AF=0.07;AFR_AF=0.20;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0728;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +21 45675904 rs73366550 T G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.48;AMR_AF=0.16;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2472;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45678620 rs61410323 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1784;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45681153 rs2070565 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.96;AMR_AF=0.69;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7774;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45705988 rs3746964 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.54;AMR_AF=0.12;AN=2;ASN_AF=0.32;AVGPOST=0.9544;ERATE=0.0019;EUR_AF=0.03;LDAF=0.2346;RSQ=0.9234;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.45 +21 45712977 rs1800521 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.44;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9710;ERATE=0.0411;EUR_AF=0.37;LDAF=0.3537;RSQ=0.9534;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45714256 rs1800526 G C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.24;AMR_AF=0.21;AN=2;ASN_AF=0.38;AVGPOST=0.9699;ERATE=0.0038;EUR_AF=0.15;LDAF=0.2466;RSQ=0.9394;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-2.12,-0.00,-3.66 +21 45717550 rs1133779 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5428;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +21 45743822 rs743481 G T 100 PASS AA=t;AC=1;AF=0.05;AFR_AF=0.16;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9990;ERATE=0.0007;LDAF=0.0473;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.46 +21 45744821 rs2876959 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.38;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9974;ERATE=0.0014;LDAF=0.1017;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.90,-0.06 +21 45745159 rs76758103 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9988;ERATE=0.0003;LDAF=0.0456;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45750168 rs11552068 A G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.18;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=0.9986;ERATE=0.0006;LDAF=0.0522;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45750248 rs11552067 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.23;AMR_AF=0.54;AN=2;ASN_AF=0.36;AVGPOST=0.9911;ERATE=0.0010;EUR_AF=0.58;LDAF=0.4372;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45759045 rs11870 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.47;AMR_AF=0.24;AN=2;ASN_AF=0.15;AVGPOST=0.9868;ERATE=0.0008;EUR_AF=0.25;LDAF=0.2705;RSQ=0.9754;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +21 45798885 rs45516594 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9939;ERATE=0.0082;EUR_AF=0.01;LDAF=0.0557;RSQ=0.9572;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45811343 rs1556314 T G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.33;AMR_AF=0.19;AN=2;ASN_AF=0.17;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.18;LDAF=0.2108;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45817620 rs1785436 T C 100 PASS AA=t;AC=2;AF=0.79;AFR_AF=0.84;AMR_AF=0.80;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7937;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45817713 rs45622331 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.17;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9984;ERATE=0.0033;EUR_AF=0.0013;LDAF=0.0557;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45819167 rs10211867 A G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0485;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45821529 rs9974831 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.46;AVGPOST=0.9884;ERATE=0.0006;EUR_AF=0.26;LDAF=0.2992;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45821582 rs9974927 T G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0479;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45821794 rs1785437 C T 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.66;AMR_AF=0.76;AN=2;ASN_AF=0.77;AVGPOST=0.9961;ERATE=0.0043;EUR_AF=0.76;LDAF=0.7409;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45824989 rs73375979 A G 100 PASS AA=N;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0480;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45825191 rs9653783 T C 100 PASS AA=N;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0480;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45826434 rs1785454 C T 100 PASS AA=c;AC=1;AF=0.71;AFR_AF=0.55;AMR_AF=0.75;AN=2;ASN_AF=0.76;AVGPOST=0.9969;ERATE=0.0020;EUR_AF=0.76;LDAF=0.7118;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45826462 rs1618355 C A 100 PASS AA=c;AC=1;AF=0.71;AFR_AF=0.54;AMR_AF=0.75;AN=2;ASN_AF=0.76;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7096;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45837790 rs1785452 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.51;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9976;ERATE=0.0027;EUR_AF=0.76;LDAF=0.7109;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45844751 rs9978351 A G 100 PASS AA=G;AC=1;AF=0.95;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=0.9953;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9540;RSQ=0.9622;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45876620 rs61735243 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0541;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45959195 rs233316 G A 100 PASS AA=a;AC=1;AF=0.60;AFR_AF=0.68;AMR_AF=0.66;AN=2;ASN_AF=0.48;AVGPOST=0.9316;ERATE=0.0057;EUR_AF=0.61;LDAF=0.5885;RSQ=0.8993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +21 45959312 rs233317 C T 100 PASS AA=c;AC=2;AF=0.79;AFR_AF=0.79;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=0.9957;ERATE=0.0030;EUR_AF=0.83;LDAF=0.7909;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45959386 rs233318 G A 100 PASS AA=a;AC=1;AF=0.49;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=0.9454;ERATE=0.0418;EUR_AF=0.49;LDAF=0.4946;RSQ=0.9146;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.67 +21 45959733 rs233319 C T 100 PASS AA=c;AC=1;AF=0.61;AFR_AF=0.65;AMR_AF=0.67;AN=2;ASN_AF=0.49;AVGPOST=0.9739;ERATE=0.0022;EUR_AF=0.63;LDAF=0.5987;RSQ=0.9561;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45959918 rs233320 G A 100 PASS AA=g;AC=1;AF=0.63;AFR_AF=0.73;AMR_AF=0.68;AN=2;ASN_AF=0.50;AVGPOST=0.9787;ERATE=0.0053;EUR_AF=0.64;LDAF=0.6268;RSQ=0.9667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45970718 rs233238 C T 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.35;AMR_AF=0.19;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2862;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45970812 rs2329834 G A 100 PASS AA=g;AC=1;AF=0.50;AFR_AF=0.46;AMR_AF=0.62;AN=2;ASN_AF=0.32;AVGPOST=0.9981;ERATE=0.0009;EUR_AF=0.59;LDAF=0.4981;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45971018 rs478947 C G 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=0.9926;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2393;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45971023 rs478967 G T 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=0.9925;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2387;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45971299 rs233240 T C 100 PASS AA=t;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.17;AN=2;ASN_AF=0.38;AVGPOST=0.9990;ERATE=0.0017;EUR_AF=0.23;LDAF=0.2431;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45978090 rs233252 C T 100 PASS AA=t;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.89;AN=2;ASN_AF=0.73;AVGPOST=0.9915;ERATE=0.0069;EUR_AF=0.96;LDAF=0.8717;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 45978499 rs377549 T G 100 PASS AA=g;AC=2;AF=0.83;AFR_AF=0.84;AMR_AF=0.88;AN=2;ASN_AF=0.70;AVGPOST=0.9641;ERATE=0.0008;EUR_AF=0.90;LDAF=0.8258;RSQ=0.9145;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.78,-0.00 +21 45978503 rs435424 G A 100 PASS AA=g;AC=2;AF=0.83;AFR_AF=0.85;AMR_AF=0.88;AN=2;ASN_AF=0.70;AVGPOST=0.9662;ERATE=0.0005;EUR_AF=0.90;LDAF=0.8262;RSQ=0.9189;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.75,-0.00 +21 45993675 rs9976062 G A 100 PASS AA=N;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=0.9962;ERATE=0.0017;LDAF=0.0205;RSQ=0.9291;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 45993727 rs148418343 A C 100 PASS AA=N;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.12;AVGPOST=0.9745;ERATE=0.0075;EUR_AF=0.01;LDAF=0.0574;RSQ=0.8152;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 45993851 rs201895065 C T 100 PASS AA=N;AC=2;AF=0.33;AFR_AF=0.35;AMR_AF=0.38;AN=2;ASN_AF=0.49;AVGPOST=0.8507;ERATE=0.0507;EUR_AF=0.18;LDAF=0.3347;RSQ=0.7720;SNPSOURCE=EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:1.650:-0.88,-0.39,-0.34 +21 45994110 rs201015288 A G 100 PASS AA=N;AC=2;AF=0.38;AFR_AF=0.49;AMR_AF=0.41;AN=2;ASN_AF=0.43;AVGPOST=0.9072;ERATE=0.0213;EUR_AF=0.25;LDAF=0.3888;RSQ=0.8465;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +21 45994843 rs12626886 G C 100 PASS AA=g;AC=2;AF=0.13;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.30;AVGPOST=0.9897;ERATE=0.0006;EUR_AF=0.07;LDAF=0.1256;RSQ=0.9638;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46000398 rs2020221 C T 100 PASS AA=c;AC=2;AF=0.35;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.25;LDAF=0.3502;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46011468 rs465279 G A 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.23;AMR_AF=0.65;AN=2;ASN_AF=0.47;AVGPOST=0.9891;ERATE=0.0015;EUR_AF=0.71;LDAF=0.5290;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +21 46032094 rs411254 A G 100 PASS AA=g;AC=2;AF=0.92;AFR_AF=0.96;AMR_AF=0.96;AN=2;ASN_AF=0.81;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9161;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46047418 rs8126553 C T 100 PASS AA=t;AC=1;AF=0.77;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.64;AVGPOST=0.9938;ERATE=0.0011;EUR_AF=0.77;LDAF=0.7667;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46047633 rs8127342 A G 100 PASS AA=g;AC=1;AF=0.64;AFR_AF=0.53;AMR_AF=0.68;AN=2;ASN_AF=0.64;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.71;LDAF=0.6452;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46047710 rs8131142 T C 100 PASS AA=c;AC=1;AF=0.65;AFR_AF=0.58;AMR_AF=0.68;AN=2;ASN_AF=0.63;AVGPOST=0.9933;ERATE=0.0037;EUR_AF=0.71;LDAF=0.6532;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46047857 rs9980129 C T 100 PASS AA=t;AC=1;AF=0.63;AFR_AF=0.51;AMR_AF=0.68;AN=2;ASN_AF=0.62;AVGPOST=0.9936;ERATE=0.0039;EUR_AF=0.70;LDAF=0.6335;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46047925 rs9979457 G T 100 PASS AA=g;AC=1;AF=0.64;AFR_AF=0.53;AMR_AF=0.67;AN=2;ASN_AF=0.63;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6423;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46047971 rs463217 T C 100 PASS AA=c;AC=1;AF=0.77;AFR_AF=0.85;AMR_AF=0.77;AN=2;ASN_AF=0.69;AVGPOST=0.9889;ERATE=0.0016;EUR_AF=0.77;LDAF=0.7655;RSQ=0.9755;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46057393 rs2838602 T A 100 PASS AA=a;AC=1;AF=0.76;AFR_AF=0.92;AMR_AF=0.77;AN=2;ASN_AF=0.62;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7647;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46057548 rs4818947 A C 100 PASS AA=c;AC=1;AF=0.77;AFR_AF=0.89;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0019;EUR_AF=0.77;LDAF=0.7677;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46057806 rs4818950 G A 100 PASS AA=g;AC=1;AF=0.62;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.65;AVGPOST=0.9984;ERATE=0.0026;EUR_AF=0.69;LDAF=0.6206;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46057958 rs4818951 C T 100 PASS AA=c;AC=1;AF=0.64;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=0.9867;ERATE=0.0097;EUR_AF=0.75;LDAF=0.6396;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46058060 rs13051517 C T 100 PASS AA=c;AC=1;AF=0.37;AFR_AF=0.27;AMR_AF=0.48;AN=2;ASN_AF=0.31;AVGPOST=0.9790;ERATE=0.0025;EUR_AF=0.42;LDAF=0.3688;RSQ=0.9680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.950:-0.28,-0.32,-4.22 +21 46067180 rs462007 C T 100 PASS AA=t;AC=1;AF=0.81;AFR_AF=0.98;AMR_AF=0.82;AN=2;ASN_AF=0.67;AVGPOST=0.9870;ERATE=0.0074;EUR_AF=0.81;LDAF=0.8105;RSQ=0.9694;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46074202 rs9984726 A G 100 PASS AA=g;AC=1;AF=0.76;AFR_AF=0.92;AMR_AF=0.77;AN=2;ASN_AF=0.62;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7626;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46077946 rs9306111 A G 100 PASS AA=N;AC=1;AF=0.77;AFR_AF=0.92;AMR_AF=0.77;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7694;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46078220 rs9306112 T C 100 PASS AA=t;AC=1;AF=0.72;AFR_AF=0.82;AMR_AF=0.73;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7192;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46086377 rs2838622 A G 100 PASS AA=g;AC=1;AF=0.57;AFR_AF=0.72;AMR_AF=0.56;AN=2;ASN_AF=0.53;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5654;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46086757 rs7275298 G A 100 PASS AA=a;AC=1;AF=0.68;AFR_AF=0.78;AMR_AF=0.71;AN=2;ASN_AF=0.59;AVGPOST=0.9668;ERATE=0.0006;EUR_AF=0.68;LDAF=0.6841;RSQ=0.9488;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46086758 rs13046903 C T 100 PASS AA=t;AC=1;AF=0.68;AFR_AF=0.78;AMR_AF=0.71;AN=2;ASN_AF=0.59;AVGPOST=0.9667;ERATE=0.0011;EUR_AF=0.68;LDAF=0.6842;RSQ=0.9488;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 46191270 rs11569 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.94;AMR_AF=0.73;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7998;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46191447 rs2838679 T C 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2390;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46311813 rs235326 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.95;AMR_AF=0.65;AN=2;ASN_AF=0.76;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7671;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46314907 rs235330 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46318940 rs2838728 A G 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.27;AMR_AF=0.25;AN=2;ASN_AF=0.41;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2764;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +21 46393090 rs3827260 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.27;AMR_AF=0.59;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5747;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46641968 rs1051367 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.43;AMR_AF=0.48;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5326;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 46685592 rs1006887 C G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.94;AMR_AF=0.70;AN=2;ASN_AF=0.77;AVGPOST=0.9649;ERATE=0.0268;EUR_AF=0.60;LDAF=0.7292;RSQ=0.9503;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.95,-0.00 +21 46705621 rs2297285 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1684;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 46951556 rs12659 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.52;AMR_AF=0.58;AN=2;ASN_AF=0.47;AVGPOST=0.9966;ERATE=0.0008;EUR_AF=0.57;LDAF=0.5338;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 46952094 rs914231 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.42;AMR_AF=0.57;AN=2;ASN_AF=0.47;AVGPOST=0.9933;ERATE=0.0009;EUR_AF=0.57;LDAF=0.5087;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +21 46957794 rs1051266 T C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.35;AMR_AF=0.57;AN=2;ASN_AF=0.47;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4914;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +21 46957916 rs1131596 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.28;AMR_AF=0.56;AN=2;ASN_AF=0.47;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4769;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.06,-0.00 +21 47316317 rs150126397 C T 100 PASS AA=C;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.0013;LDAF=0.0049;RSQ=0.7489;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:0.850:-1.82,-0.01,-5.00 +21 47320890 rs2075887 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.07;AMR_AF=0.01;AN=2;ASN_AF=0.09;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0442;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47329352 rs2277812 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=0.9841;ERATE=0.0047;EUR_AF=0.71;LDAF=0.8486;RSQ=0.9568;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47350796 rs11089031 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.20;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2485;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47355240 rs3827269 T C 100 PASS AA=t;AC=1;AF=0.07;AFR_AF=0.17;AMR_AF=0.02;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0695;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.44,-0.00,-5.00 +21 47404397 rs3746993 A G 100 PASS AA=A;AC=1;AF=0.87;AFR_AF=0.88;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8736;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47409503 rs2277814 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.88;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9992;ERATE=0.0014;EUR_AF=0.83;LDAF=0.8707;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47410931 rs1980982 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.79;AMR_AF=0.46;AN=2;ASN_AF=0.33;AVGPOST=0.9946;ERATE=0.0261;EUR_AF=0.53;LDAF=0.5238;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47412705 rs35059000 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0067;RSQ=0.9569;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.44 +21 47412751 rs2850173 A C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.87;AVGPOST=0.9707;ERATE=0.0136;EUR_AF=0.86;LDAF=0.8732;RSQ=0.9016;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +21 47417303 rs2839077 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.32;AMR_AF=0.64;AN=2;ASN_AF=0.69;AVGPOST=0.9936;ERATE=0.0318;EUR_AF=0.48;LDAF=0.5248;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47417578 rs2276255 A G 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.47;AMR_AF=0.30;AN=2;ASN_AF=0.16;AVGPOST=0.9990;ERATE=0.0021;EUR_AF=0.27;LDAF=0.2912;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +21 47420723 rs13053065 G C 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2746;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47420726 rs7276098 C G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.91;AMR_AF=0.93;AN=2;ASN_AF=0.87;AVGPOST=0.9975;ERATE=0.0021;EUR_AF=0.87;LDAF=0.8908;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47422639 rs2236485 A G 100 PASS AA=a;AC=2;AF=0.90;AFR_AF=0.94;AMR_AF=0.93;AN=2;ASN_AF=0.87;AVGPOST=0.9978;ERATE=0.0008;EUR_AF=0.87;LDAF=0.8970;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.78,-0.00 +21 47423389 rs1053312 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.42;AMR_AF=0.30;AN=2;ASN_AF=0.15;AVGPOST=0.9942;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2772;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +21 47423507 rs1053315 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.41;AMR_AF=0.29;AN=2;ASN_AF=0.16;AVGPOST=0.9941;ERATE=0.0007;EUR_AF=0.27;LDAF=0.2747;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47423636 rs1053320 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.43;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9934;ERATE=0.0006;EUR_AF=0.25;LDAF=0.2697;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47532536 rs2070957 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.22;AMR_AF=0.08;AN=2;ASN_AF=0.36;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=0.03;LDAF=0.1659;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47536546 rs762438 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.62;AN=2;ASN_AF=0.40;AVGPOST=0.9984;ERATE=0.0022;EUR_AF=0.54;LDAF=0.4436;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47537882 rs7279347 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.35;AMR_AF=0.62;AN=2;ASN_AF=0.38;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4686;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47538960 rs2839110 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.54;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7916;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47539790 rs3737362 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.82;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=0.9965;ERATE=0.0010;EUR_AF=0.83;LDAF=0.8560;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:1.950:-3.13,-0.47,-0.18 +21 47540421 rs73159701 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.37;AVGPOST=0.9970;ERATE=0.0007;EUR_AF=0.21;LDAF=0.2186;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +21 47542861 rs915786 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8883;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47544541 rs3746995 C G 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.53;LDAF=0.4424;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47544553 rs113857622 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0087;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47544838 rs9981981 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.41;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1495;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47545155 rs2839113 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.82;AMR_AF=0.89;AN=2;ASN_AF=0.90;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8519;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47545346 rs2276101 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1514;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47545768 rs1042917 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.23;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9971;ERATE=0.0008;EUR_AF=0.53;LDAF=0.4435;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47545823 rs13052956 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4418;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47545826 rs13046639 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4422;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47545913 rs2839114 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.11;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3543;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47551833 rs7279622 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.71;AN=2;ASN_AF=0.45;AVGPOST=0.9832;ERATE=0.0008;EUR_AF=0.56;LDAF=0.5375;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.44 +21 47557222 rs10432965 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.20;AMR_AF=0.07;AN=2;ASN_AF=0.40;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1720;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47558473 rs1047179 G C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.40;AVGPOST=0.9325;ERATE=0.0184;EUR_AF=0.47;LDAF=0.4892;RSQ=0.8974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-0.57,-0.14,-4.10 +21 47565423 rs201828652 T C 100 PASS AA=T;AC=1;AF=0.0037;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;ASN_AF=0.01;AVGPOST=0.9979;ERATE=0.0005;LDAF=0.0035;RSQ=0.7749;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:0.700:-2.04,-0.00,-5.00 +21 47575372 rs2277820 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.80;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.32;LDAF=0.4126;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47581655 rs3827274 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9879;ERATE=0.0010;EUR_AF=0.29;LDAF=0.2906;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.16 +21 47614469 rs2254524 A C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.94;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7368;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47614528 rs61735802 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0275;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47635713 rs11701729 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.25;AMR_AF=0.68;AN=2;ASN_AF=0.40;AVGPOST=0.9982;ERATE=0.0060;EUR_AF=0.70;LDAF=0.5198;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47666332 rs2839169 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.41;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1513;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47674275 rs2250213 G A 100 PASS AA=g;AC=2;AF=0.37;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3661;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47674460 rs16979014 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.16;AMR_AF=0.05;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0590;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47676711 rs2839173 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.44;AMR_AF=0.47;AN=2;ASN_AF=0.29;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3775;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.04,-0.00 +21 47676837 rs17183017 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.16;AMR_AF=0.05;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0602;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-0.02,-1.40,-5.00 +21 47676934 rs2839174 T C 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.44;AMR_AF=0.48;AN=2;ASN_AF=0.29;AVGPOST=0.9984;ERATE=0.0016;EUR_AF=0.36;LDAF=0.3777;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +21 47685939 rs2839181 A G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.47;AMR_AF=0.52;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4114;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47705237 rs17176131 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.31;AMR_AF=0.50;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3702;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47711229 rs2276257 A G 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.29;AMR_AF=0.50;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3702;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47766004 rs2839216 T G 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.43;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1143;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47766139 rs9982233 T C 100 PASS AA=t;AC=1;AF=0.68;AFR_AF=0.80;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6833;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47769134 rs35210219 A T 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.53;AMR_AF=0.19;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2610;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47771436 rs199807929 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47777063 rs2839223 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8597;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47783655 rs61407822 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.44;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1174;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47783796 rs8131546 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.79;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.87;LDAF=0.8583;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47786449 rs9637173 T A 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.92;AMR_AF=0.83;AN=2;ASN_AF=0.79;AVGPOST=0.9960;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8479;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47786494 rs2839226 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.40;AMR_AF=0.76;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6910;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47786524 rs2839227 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.56;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2669;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47786817 rs2839228 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.79;AVGPOST=0.9963;ERATE=0.0019;EUR_AF=0.87;LDAF=0.8497;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47787002 rs6518289 T C 100 PASS AA=t;AC=2;AF=0.85;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8536;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47821588 rs6518291 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.58;AMR_AF=0.24;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2995;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47831309 rs58559714 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.48;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1582;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47831509 rs35940413 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.50;AMR_AF=0.15;AN=2;ASN_AF=0.0035;AVGPOST=0.9987;ERATE=0.0008;EUR_AF=0.14;LDAF=0.1856;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47831522 rs61735543 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.24;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0674;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47831618 rs16979162 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.48;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1571;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47831729 rs61735810 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9966;ERATE=0.0005;LDAF=0.0185;RSQ=0.9311;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-0.75,-0.09,-2.40 +21 47832019 rs73907502 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.48;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1584;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47832029 rs73379348 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.48;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1583;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47836122 rs2839245 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1577;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47836206 rs35978208 A C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1581;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47836216 rs60444527 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1577;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47836395 rs1044998 T G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1581;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47836426 rs57108405 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.45;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1175;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47836547 rs35346764 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.48;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1598;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47838123 rs2839246 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.43;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9950;ERATE=0.0099;EUR_AF=0.08;LDAF=0.1419;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47841941 rs7277175 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1577;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47847757 rs55937012 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1577;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47848459 rs2839256 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1582;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47848554 rs60356719 G A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.10;LDAF=0.1585;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +21 47850155 rs1023160 G C 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.49;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1610;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.30 +21 47850186 rs1023161 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1578;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.11,-0.66 +21 47850405 rs2839257 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.82;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6768;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +21 47851753 rs2073376 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.82;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6765;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47858272 rs2051190 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.18;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2816;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47910523 rs7279002 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.49;AMR_AF=0.22;AN=2;ASN_AF=0.44;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3495;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.88,-0.01,-5.00 +21 47961634 rs2070434 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.32;AN=2;ASN_AF=0.35;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2836;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47961711 rs2070435 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.54;AMR_AF=0.23;AN=2;ASN_AF=0.44;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3938;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 47970581 rs2255397 G A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=0.9879;ERATE=0.0182;EUR_AF=0.18;LDAF=0.2451;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47970696 rs2839319 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.25;AN=2;ASN_AF=0.02;AVGPOST=0.9944;ERATE=0.0047;EUR_AF=0.03;LDAF=0.0628;RSQ=0.9694;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 47971539 rs2255526 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.86;AMR_AF=0.67;AN=2;ASN_AF=0.77;AVGPOST=0.9952;ERATE=0.0009;EUR_AF=0.71;LDAF=0.7504;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +21 47974582 rs1107065 A G 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.19;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9695;ERATE=0.0130;EUR_AF=0.39;LDAF=0.3365;RSQ=0.9494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-2.94,-0.00 +21 47986633 rs3819044 C A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.94;AMR_AF=0.92;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9120;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 47987547 rs8127941 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.26;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.18;LDAF=0.1455;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 48019239 rs9722 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.43;AMR_AF=0.15;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.2559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +21 48022230 rs1051169 C G 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.42;AMR_AF=0.67;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.65;LDAF=0.5746;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +21 48022375 rs2186358 C A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.69;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7925;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 48063476 rs10854485 C G 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.85;AMR_AF=0.82;AN=2;ASN_AF=0.89;AVGPOST=0.9936;ERATE=0.0051;EUR_AF=0.79;LDAF=0.8331;RSQ=0.9832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +21 48078611 rs2070436 G A 100 PASS AA=.;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1791;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 76962 rs6111385 T C 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7911;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 139419 rs16995668 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0201;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 168728 rs4813043 T A 100 PASS AA=a;AC=2;AF=0.62;AFR_AF=0.82;AMR_AF=0.58;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6211;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 207903 rs2298148 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.36;AMR_AF=0.09;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1769;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 210306 rs1053783 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.45;AMR_AF=0.12;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0026;EUR_AF=0.09;LDAF=0.2103;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 238507 rs373225 A C 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.14;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.61;LDAF=0.4956;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 239688 rs399083 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.57;AMR_AF=0.59;AN=2;ASN_AF=0.63;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6136;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 239697 rs399094 G C 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.73;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6506;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 256573 rs6075567 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4849;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 256727 rs3827147 T A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.74;AMR_AF=0.50;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6558;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 257733 rs2277781 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.75;AMR_AF=0.52;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6668;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 257812 rs6046375 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.88;AMR_AF=0.53;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6949;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 259969 rs7271033 G C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.85;AMR_AF=0.50;AN=2;ASN_AF=0.79;AVGPOST=0.9897;ERATE=0.0137;EUR_AF=0.58;LDAF=0.6830;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 264764 rs6046931 C A 100 PASS AA=A;AC=2;AF=0.08;AFR_AF=0.23;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0816;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 371972 rs6051637 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.86;AMR_AF=0.53;AN=2;ASN_AF=0.76;AVGPOST=0.9875;ERATE=0.0005;EUR_AF=0.53;LDAF=0.6609;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 377226 rs6115830 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.51;AMR_AF=0.37;AN=2;ASN_AF=0.34;AVGPOST=0.9973;ERATE=0.0008;EUR_AF=0.41;LDAF=0.4077;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 389456 rs3746792 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.40;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9940;ERATE=0.0097;EUR_AF=0.51;LDAF=0.4236;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +20 398278 rs11698154 G T 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1189;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 402921 rs6051905 C G 100 PASS AA=N;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.38;LDAF=0.3294;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 428767 rs6139203 A C 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.61;AMR_AF=0.50;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4345;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 590456 rs282164 A G 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.71;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9611;ERATE=0.0031;EUR_AF=0.80;LDAF=0.8402;RSQ=0.8990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.45,-0.02 +20 741847 rs910857 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.62;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=0.9055;ERATE=0.0417;EUR_AF=0.71;LDAF=0.6007;RSQ=0.8619;SNPSOURCE=LOWCOV,EXOME;THETA=0.0314;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.05 +20 825678 rs538094 T C 100 PASS AA=.;AC=2;AF=0.85;AFR_AF=0.78;AMR_AF=0.88;AN=2;ASN_AF=0.88;AVGPOST=0.9889;ERATE=0.0006;EUR_AF=0.87;LDAF=0.8517;RSQ=0.9666;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.59,-0.13 +20 854940 rs944110 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.54;AMR_AF=0.43;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4887;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 858769 rs873147 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.32;AMR_AF=0.07;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1344;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 860426 rs61737018 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.30;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0019;EUR_AF=0.07;LDAF=0.1280;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 896574 rs116327782 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0096;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 947909 rs6140807 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0254;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 1099523 rs1803415 T G 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.83;AMR_AF=0.79;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7249;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1108122 rs6514113 C T 100 PASS AA=C;AC=2;AF=0.10;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0992;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1285933 rs3795139 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.47;AMR_AF=0.34;AN=2;ASN_AF=0.54;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4101;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 1286677 rs61747127 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=0.9969;ERATE=0.0004;LDAF=0.0078;RSQ=0.8509;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.20,-0.43,-2.11 +20 1286711 rs4813082 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9951;RSQ=0.9448;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +20 1291076 rs1048628 G C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.91;AVGPOST=0.9974;ERATE=0.0074;EUR_AF=0.56;LDAF=0.6291;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 1292964 rs4814110 T C 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9953;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +20 1293046 rs1048621 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.21;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0009;EUR_AF=0.21;LDAF=0.1425;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 1293247 rs2273959 C T 100 PASS AA=t;AC=1;AF=0.33;AFR_AF=0.39;AMR_AF=0.41;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3335;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 1356261 rs6074549 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1458876 rs6042506 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.41;AMR_AF=0.11;AN=2;ASN_AF=0.0035;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1399;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 1459060 rs6042507 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9962;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9300;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1459246 rs6033876 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.17;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0545;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 1471903 rs958839 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.48;AMR_AF=0.11;AN=2;ASN_AF=0.0035;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1552;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.13 +20 1532595 rs2249317 T C 100 PASS AA=.;AC=2;AF=0.84;AFR_AF=0.95;AMR_AF=0.75;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8386;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1546911 rs2243603 C G 100 PASS AA=.;AC=2;AF=0.75;AFR_AF=0.87;AMR_AF=0.67;AN=2;ASN_AF=0.75;AVGPOST=0.9791;ERATE=0.0242;EUR_AF=0.71;LDAF=0.7478;RSQ=0.9578;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +20 1551485 rs2254458 C T 100 PASS AA=.;AC=2;AF=0.72;AFR_AF=0.85;AMR_AF=0.62;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7222;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1552430 rs2253427 T C 100 PASS AA=.;AC=2;AF=0.80;AFR_AF=0.93;AMR_AF=0.69;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8035;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.18,-0.00 +20 1592019 rs45482592 G A 100 PASS AA=.;AC=2;AF=0.34;AFR_AF=0.41;AMR_AF=0.23;AN=2;ASN_AF=0.51;AVGPOST=0.8559;ERATE=0.0017;EUR_AF=0.23;LDAF=0.3269;RSQ=0.8103;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:1.750:-2.90,-0.46,-0.19 +20 1592175 rs201724217 T G 100 PASS AA=.;AC=2;AF=0.28;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.31;AVGPOST=0.8607;ERATE=0.0035;EUR_AF=0.24;LDAF=0.2870;RSQ=0.7927;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:1.550:-2.73,-0.45,-0.19 +20 1610939 rs3746722 G A 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.94;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7905;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +20 1615883 rs62186949 A G 100 PASS AA=.;AC=2;AF=0.10;AFR_AF=0.18;AMR_AF=0.11;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1033;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1615959 rs9305125 T C 100 PASS AA=.;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8719;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1616137 rs6034239 G A 100 PASS AA=.;AC=2;AF=0.55;AFR_AF=0.77;AMR_AF=0.45;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5536;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1616206 rs6043409 A G 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.84;AMR_AF=0.74;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7633;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1629906 rs6079967 C T 100 PASS AA=.;AC=1;AF=0.38;AFR_AF=0.33;AMR_AF=0.46;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.44;LDAF=0.3811;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 1895826 rs17855611 G A 100 PASS AA=g;AC=2;AF=0.32;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.53;AVGPOST=0.9842;ERATE=0.0005;EUR_AF=0.25;LDAF=0.3181;RSQ=0.9803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0093;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.62,-0.01 +20 1896100 rs6136375 C T 100 PASS AA=c;AC=2;AF=0.44;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.66;AVGPOST=0.9988;ERATE=0.0034;EUR_AF=0.37;LDAF=0.4439;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 1961022 rs112907294 T C 100 PASS AA=T;AC=1;AF=0.0023;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0011;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2276663 rs115896762 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0106;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2290333 rs214803 C A 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.43;AMR_AF=0.81;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7673;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2297790 rs214814 G A 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.23;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1275;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2315929 rs2076406 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.58;AMR_AF=0.60;AN=2;ASN_AF=0.87;AVGPOST=0.9884;ERATE=0.0132;EUR_AF=0.51;LDAF=0.6365;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0215;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2321105 rs214830 G C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.94;AMR_AF=0.67;AN=2;ASN_AF=0.84;AVGPOST=0.9933;ERATE=0.0028;EUR_AF=0.65;LDAF=0.7687;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2375262 rs2076405 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.95;AMR_AF=0.92;AN=2;ASN_AF=0.67;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.93;LDAF=0.8646;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2376080 rs73894929 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0206;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2376126 rs73894931 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0093;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2380323 rs6114033 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.18;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1420;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2380396 rs2076404 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.42;AMR_AF=0.63;AN=2;ASN_AF=0.64;AVGPOST=0.9783;ERATE=0.0009;EUR_AF=0.69;LDAF=0.6023;RSQ=0.9665;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.70 +20 2413125 rs2076653 C T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.37;AN=2;ASN_AF=0.48;AVGPOST=0.9817;ERATE=0.0372;EUR_AF=0.32;LDAF=0.4234;RSQ=0.9749;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2413126 rs6036467 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9848;ERATE=0.0193;EUR_AF=0.97;LDAF=0.9590;RSQ=0.8700;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2413320 rs2076652 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.66;AMR_AF=0.41;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4831;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2443441 rs2143862 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.23;AMR_AF=0.18;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1970;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2539387 rs6050063 G A 100 PASS AA=a;AC=2;AF=0.64;AFR_AF=0.75;AMR_AF=0.66;AN=2;ASN_AF=0.50;AVGPOST=0.9963;ERATE=0.0024;EUR_AF=0.65;LDAF=0.6366;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +20 2552805 rs1883981 T A 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.14;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=0.9879;ERATE=0.0165;EUR_AF=0.46;LDAF=0.3756;RSQ=0.9789;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2552926 rs1883980 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.38;AMR_AF=0.63;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5168;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2559778 rs6083735 G C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.71;LDAF=0.6723;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2593006 rs1015159 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.49;AMR_AF=0.64;AN=2;ASN_AF=0.81;AVGPOST=0.9978;ERATE=0.0215;EUR_AF=0.59;LDAF=0.6320;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2593863 rs6515646 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.25;LDAF=0.2651;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2596762 rs6050622 G A 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.36;AMR_AF=0.18;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0023;EUR_AF=0.09;LDAF=0.2217;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2597978 rs4815428 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.20;AMR_AF=0.63;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0038;EUR_AF=0.65;LDAF=0.5221;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2616556 rs910271 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.71;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7788;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2616679 rs2422808 C G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.67;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7700;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2618094 rs6037181 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.67;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7707;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2618140 rs6083915 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.67;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7706;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2621998 rs6050798 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.51;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0018;EUR_AF=0.49;LDAF=0.5191;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2633936 rs2073194 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.91;AMR_AF=0.87;AN=2;ASN_AF=0.85;AVGPOST=0.9991;ERATE=0.0025;EUR_AF=0.80;LDAF=0.8503;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 2637071 rs8958 T C 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.79;AMR_AF=0.68;AN=2;ASN_AF=0.60;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6582;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2644407 rs2073193 C G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.42;AMR_AF=0.70;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6337;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2644558 rs201607780 G C 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2775332 rs127078 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.45;AMR_AF=0.25;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3118;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2777828 rs742707 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.06;AMR_AF=0.51;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4046;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.19,-0.00,-5.00 +20 2796133 rs2073127 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=0.9938;ERATE=0.0023;EUR_AF=0.25;LDAF=0.3040;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2816821 rs2274669 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2140;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2840773 rs3818605 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.24;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.17;LDAF=0.1497;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2842685 rs6051449 A C 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4497;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +20 2845130 rs730819 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.24;AMR_AF=0.41;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4393;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2945759 rs1178027 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.64;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2409;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 2967430 rs78716368 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 2996497 rs1178016 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.55;AMR_AF=0.56;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6083;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3002889 rs544090 A C 100 PASS AA=a;AC=2;AF=0.75;AFR_AF=0.91;AMR_AF=0.73;AN=2;ASN_AF=0.92;AVGPOST=0.9952;ERATE=0.0016;EUR_AF=0.52;LDAF=0.7443;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3025107 rs6051545 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2325;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3026415 rs8184100 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2311;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3147024 rs7260750 G A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.94;AMR_AF=0.71;AN=2;ASN_AF=0.96;AVGPOST=0.9969;ERATE=0.0007;EUR_AF=0.66;LDAF=0.8101;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3147468 rs17853865 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.02;AVGPOST=0.9970;ERATE=0.0028;EUR_AF=0.24;LDAF=0.1320;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0083;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3147762 rs6051612 A G 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.86;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=0.9741;ERATE=0.0199;EUR_AF=0.98;LDAF=0.9334;RSQ=0.8394;SNPSOURCE=LOWCOV,EXOME;THETA=0.0153;VT=SNP GT:DS:GL 1|1:1.950:-3.70,-0.51,-0.16 +20 3175556 rs2295549 C G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0014;EUR_AF=0.39;LDAF=0.3899;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3176009 rs2295552 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.43;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9955;ERATE=0.0074;EUR_AF=0.43;LDAF=0.4091;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3193978 rs8362 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.49;AMR_AF=0.31;AN=2;ASN_AF=0.60;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4240;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3204084 rs9101 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.29;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0060;EUR_AF=0.32;LDAF=0.3153;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3209371 rs2281575 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.69;AVGPOST=0.9948;ERATE=0.0005;EUR_AF=0.46;LDAF=0.4736;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3211719 rs3803953 T G 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.31;AMR_AF=0.53;AN=2;ASN_AF=0.47;AVGPOST=0.9931;ERATE=0.0730;EUR_AF=0.48;LDAF=0.4462;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3214126 rs3803955 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.32;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0028;EUR_AF=0.25;LDAF=0.2303;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3214819 rs3827075 T G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.66;AMR_AF=0.45;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4946;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3215548 rs3803957 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2888;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3218355 rs3827076 C G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.54;AMR_AF=0.44;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0015;EUR_AF=0.36;LDAF=0.4499;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3285126 rs2254916 A T 100 PASS AA=a;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2774;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3285140 rs2422864 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.85;LDAF=0.9212;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3564672 rs235540 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8191;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3564772 rs170976 T A 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3565546 rs235538 C G 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3575248 rs235532 G C 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8194;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +20 3624830 rs2246808 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.55;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3638;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3640823 rs2853208 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.05;AMR_AF=0.49;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3975;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3641542 rs58634535 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.33;AMR_AF=0.19;AN=2;ASN_AF=0.18;AVGPOST=0.9423;ERATE=0.0039;EUR_AF=0.17;LDAF=0.2180;RSQ=0.8620;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.950:-0.19,-0.46,-2.43 +20 3641881 rs6084431 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.31;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9902;ERATE=0.0006;EUR_AF=0.17;LDAF=0.2107;RSQ=0.9776;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +20 3650066 rs630712 C A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.93;AMR_AF=0.80;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0018;EUR_AF=0.87;LDAF=0.8327;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.74,-0.00,-5.00 +20 3657803 rs568251 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.73;AMR_AF=0.78;AN=2;ASN_AF=0.86;AVGPOST=0.9773;ERATE=0.0010;EUR_AF=0.70;LDAF=0.7615;RSQ=0.9613;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +20 3657804 rs597165 T A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.73;AMR_AF=0.78;AN=2;ASN_AF=0.85;AVGPOST=0.9767;ERATE=0.0008;EUR_AF=0.70;LDAF=0.7619;RSQ=0.9597;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +20 3670945 rs609203 C A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.20;AMR_AF=0.23;AN=2;ASN_AF=0.61;AVGPOST=0.9930;ERATE=0.0053;EUR_AF=0.21;LDAF=0.3198;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.100:-5.00,-0.68,-0.10 +20 3672836 rs910653 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.24;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3565;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3673815 rs2474436 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.88;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7772;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3675333 rs3746638 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.41;AMR_AF=0.55;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5503;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3675498 rs709012 T G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.77;AMR_AF=0.63;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7134;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3677357 rs501538 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9920;ERATE=0.0044;EUR_AF=0.97;LDAF=0.9829;RSQ=0.8196;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3677736 rs673114 T G 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.80;AMR_AF=0.65;AN=2;ASN_AF=0.74;AVGPOST=0.9988;ERATE=0.0043;EUR_AF=0.59;LDAF=0.6891;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3682011 rs1018493 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.78;AMR_AF=0.64;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6801;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3682275 rs1018492 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.78;AMR_AF=0.64;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.59;LDAF=0.6788;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.89,-0.01,-5.00 +20 3686436 rs6037651 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.78;AMR_AF=0.55;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0010;EUR_AF=0.58;LDAF=0.6576;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3721456 rs3827077 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.37;AMR_AF=0.26;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2395;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3723091 rs611073 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.86;AMR_AF=0.96;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9191;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3730524 rs62206555 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.15;AVGPOST=0.9793;ERATE=0.0039;EUR_AF=0.28;LDAF=0.1959;RSQ=0.9525;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3732225 rs60858447 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9919;ERATE=0.0006;EUR_AF=0.04;LDAF=0.0761;RSQ=0.9596;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.45 +20 3732633 rs541760 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.59;AVGPOST=0.9650;ERATE=0.0034;EUR_AF=0.57;LDAF=0.5585;RSQ=0.9488;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-2.12,-0.00,-3.66 +20 3759200 rs2281477 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.54;AN=2;ASN_AF=0.62;AVGPOST=0.9925;ERATE=0.0008;EUR_AF=0.53;LDAF=0.5432;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3778433 rs3746644 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.84;AMR_AF=0.60;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6390;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3783649 rs592687 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 3784110 rs1056720 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2388;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3838441 rs17857295 C G 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.08;AMR_AF=0.27;AN=2;ASN_AF=0.56;AVGPOST=0.9979;ERATE=0.0015;EUR_AF=0.27;LDAF=0.3028;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 3842984 rs2326369 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.21;AMR_AF=0.10;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1421;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3870079 rs71647828 T A 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0995;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.01,-1.49 +20 3870124 rs3737084 G C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.77;AVGPOST=0.9832;ERATE=0.0009;EUR_AF=0.87;LDAF=0.8759;RSQ=0.9447;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.72,-0.09 +20 3870410 rs73610117 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.25;AVGPOST=0.9924;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0926;RSQ=0.9664;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 3870417 rs3737086 C A 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9744;ERATE=0.0036;EUR_AF=0.06;LDAF=0.1080;RSQ=0.9020;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 4155948 rs1741315 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3351;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 4162411 rs1124983 T C 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.44;AMR_AF=0.38;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3373;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 4163302 rs1051904 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.47;AMR_AF=0.64;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0032;EUR_AF=0.68;LDAF=0.5445;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 4164283 rs1741327 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.79;AMR_AF=0.74;AN=2;ASN_AF=0.66;AVGPOST=0.9990;ERATE=0.0023;EUR_AF=0.70;LDAF=0.7173;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 4202802 rs835873 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.76;AMR_AF=0.76;AN=2;ASN_AF=0.99;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.83;LDAF=0.8427;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 4228735 rs35105284 C T 100 PASS AA=c;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.06;AVGPOST=0.9887;ERATE=0.0008;EUR_AF=0.28;LDAF=0.2143;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.77,-0.08 +20 4705718 rs2245220 C T 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.70;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4594;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 4705756 rs2756263 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.73;AMR_AF=0.39;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5096;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.18,-0.00 +20 4765034 rs41279440 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1243;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 4776445 rs2423004 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.48;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4546;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 4778754 rs2281639 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1723;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 4854682 rs1110277 A G 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.74;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4020;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 4855309 rs41282100 G A 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.0040;LDAF=0.0050;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 4880308 rs1776964 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.33;AMR_AF=0.45;AN=2;ASN_AF=0.61;AVGPOST=0.9990;ERATE=0.0044;EUR_AF=0.47;LDAF=0.4723;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 4883226 rs201286243 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5086939 rs6116651 A T 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.34;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1239;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5099516 rs17349 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.33;AMR_AF=0.11;AN=2;AVGPOST=0.9974;ERATE=0.0031;EUR_AF=0.07;LDAF=0.1171;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5100185 rs17348 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.33;AMR_AF=0.12;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1211;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5100209 rs17347 G C 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.35;AMR_AF=0.12;AN=2;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.08;LDAF=0.1265;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +20 5170373 rs41282118 T G 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.11;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0509;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 5283256 rs3746682 C G 100 PASS AA=g;AC=2;AF=0.73;AFR_AF=0.74;AMR_AF=0.77;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7258;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 5283376 rs3746684 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.44;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4205;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5559292 rs6038208 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1472;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 5843812 rs1699233 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.66;AMR_AF=0.41;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4556;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5843952 rs41282138 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0248;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5844121 rs1699232 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.43;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=0.9895;ERATE=0.0062;EUR_AF=0.25;LDAF=0.2947;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5844122 rs1777353 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.57;AMR_AF=0.44;AN=2;ASN_AF=0.49;AVGPOST=0.9890;ERATE=0.0043;EUR_AF=0.27;LDAF=0.4253;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 5903067 rs6085324 T A 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2418;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 5903323 rs910122 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4054;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 5903517 rs236151 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8708;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 5903848 rs236152 C G 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.63;AMR_AF=0.45;AN=2;ASN_AF=0.51;AVGPOST=0.9918;ERATE=0.0046;EUR_AF=0.34;LDAF=0.4672;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 5903894 rs236153 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.65;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4785;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 5904040 rs742711 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2418;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 5935385 rs236114 T C 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8926;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +20 5948706 rs236100 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 5948712 rs236101 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 5988095 rs4813786 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.97;AMR_AF=0.59;AN=2;ASN_AF=0.59;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7191;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 6011882 rs2423132 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +20 6064710 rs753927 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.31;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.35;LDAF=0.4391;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 6064839 rs2232077 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.73;AMR_AF=0.78;AN=2;ASN_AF=0.86;AVGPOST=0.9987;ERATE=0.0006;EUR_AF=0.67;LDAF=0.7502;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +20 6065729 rs2232074 C T 100 PASS AA=t;AC=1;AF=0.48;AFR_AF=0.42;AMR_AF=0.47;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4762;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 6065731 rs2232073 T C 100 PASS AA=t;AC=1;AF=0.46;AFR_AF=0.41;AMR_AF=0.45;AN=2;ASN_AF=0.64;AVGPOST=0.9958;ERATE=0.0068;EUR_AF=0.35;LDAF=0.4580;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 6069562 rs6117076 C T 100 PASS AA=c;AC=2;AF=0.31;AFR_AF=0.25;AMR_AF=0.36;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3062;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 6077726 rs6076938 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.27;AN=2;ASN_AF=0.17;AVGPOST=0.9986;ERATE=0.0021;EUR_AF=0.32;LDAF=0.2193;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 6096695 rs2295435 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.36;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4037;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 6100002 rs6038363 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 6100088 rs10373 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.58;AMR_AF=0.54;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5146;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 6100230 rs2273423 A C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.67;AMR_AF=0.70;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7028;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +20 6751034 rs1049007 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.89;AMR_AF=0.69;AN=2;ASN_AF=0.82;AVGPOST=0.9981;ERATE=0.0019;EUR_AF=0.63;LDAF=0.7472;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 6759115 rs235768 A T 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.63;LDAF=0.7623;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 6759706 rs13037675 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.07;LDAF=0.0494;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 7887025 rs6055387 G C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.84;AMR_AF=0.53;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.36;LDAF=0.6620;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 7980390 rs1012891 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3125;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 8626859 rs41275582 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1202;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 8665751 rs2273189 C G 100 PASS AA=C;AC=2;AF=0.15;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1504;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 8696907 rs2076689 T G 100 PASS AA=T;AC=2;AF=0.17;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1668;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 8707927 rs1015170 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.78;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5004;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +20 8713842 rs993670 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9881;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 8769180 rs2327089 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.72;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9104;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 8770130 rs2327090 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 9288522 rs6077510 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.15;AMR_AF=0.59;AN=2;ASN_AF=0.47;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.66;LDAF=0.4822;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 9520135 rs202003893 G C 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 9543622 rs2297345 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.87;AMR_AF=0.41;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.5146;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 9547018 rs11700112 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1395;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 9625003 rs4816157 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9648;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 10280083 rs363006 G A 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.13;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.16;LDAF=0.1598;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0336;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 10620275 rs1051421 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2074;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 10620386 rs1051419 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.92;AMR_AF=0.67;AN=2;ASN_AF=0.46;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6699;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 10624396 rs2273059 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0228;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 10625804 rs1801140 T G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0911;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 10632861 rs45575136 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0315;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 10637057 rs10485741 T C 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0626;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 10639385 rs2273060 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.49;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4563;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 12990044 rs3761895 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.17;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5512;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13029764 rs1431433 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 13029790 rs6078899 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.27;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2733;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13053018 rs243887 T G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.98;AMR_AF=0.77;AN=2;ASN_AF=0.55;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7539;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 13053035 rs243888 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.81;AMR_AF=0.67;AN=2;ASN_AF=0.55;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.64;LDAF=0.6586;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 13074235 rs708937 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9593;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 13090745 rs2236126 G C 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.66;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.33;LDAF=0.4187;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 13134768 rs6078938 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1874;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13140720 rs61738161 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9962;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0345;RSQ=0.9628;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13260252 rs911642 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.71;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.38;LDAF=0.4734;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13695498 rs6079146 G A 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.17;AMR_AF=0.15;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1165;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13695607 rs34414644 T G 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0776;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13698006 rs4239710 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 13747441 rs3180370 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.76;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7801;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 13753124 rs2274674 A C 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.17;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2304;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13779113 rs2273317 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0612;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 13845987 rs761811 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9963;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 13847420 rs660710 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9963;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 14306896 rs6042672 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.43;AMR_AF=0.24;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3135;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 14306953 rs6079391 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3062;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 15967327 rs34675181 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4198;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 15967719 rs62194199 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0635;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 16351329 rs2144893 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.61;AMR_AF=0.40;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.4352;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 16359567 rs6034464 A G 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.90;AMR_AF=0.69;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7647;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 16359650 rs8116503 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1787;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 16385494 rs144884167 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0087;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 16410559 rs34550969 A T 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.0882;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 16486698 rs2295115 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2500;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 16493533 rs6135775 T C 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2500;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 16493580 rs6135776 A G 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2500;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 16730522 rs6135878 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.18;AMR_AF=0.62;AN=2;ASN_AF=0.69;AVGPOST=0.9981;ERATE=0.0040;EUR_AF=0.55;LDAF=0.5150;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0247;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +20 17389877 rs2859875 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.25;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0868;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 17474690 rs6105762 T G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.44;AMR_AF=0.54;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4932;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 17474791 rs6080717 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.25;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2025;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 17474968 rs6080718 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.82;AMR_AF=0.81;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.71;LDAF=0.7303;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 17479730 rs6111549 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.45;AMR_AF=0.33;AN=2;ASN_AF=0.27;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.30;LDAF=0.3294;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 17492755 rs1559956 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.61;AMR_AF=0.19;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3048;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 17597331 rs911347 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.45;AMR_AF=0.73;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.81;LDAF=0.6292;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +20 17597361 rs911348 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9882;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +20 17599214 rs2328181 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9840;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 17600357 rs11960 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.08;AMR_AF=0.62;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.76;LDAF=0.4525;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +20 17605240 rs6034867 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +20 17622429 rs2236255 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=0.9936;ERATE=0.0833;EUR_AF=0.18;LDAF=0.2256;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 17705677 rs4814640 A G 100 PASS AA=N;AC=2;AF=0.95;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9534;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 17968871 rs76599088 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0069;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18005600 rs2281543 A C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6864;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 18022171 rs1571431 C T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.80;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5380;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 18143117 rs1205193 T G 100 PASS AA=G;AC=1;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9904;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18143355 rs1205194 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2930;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18167977 rs2747404 T C 100 PASS AA=C;AC=1;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18295730 rs34099160 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.19;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1266;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18296072 rs1033545 T A 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9950;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 18296076 rs2228273 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.19;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1257;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18379129 rs143846023 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0062;RSQ=0.9679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18393312 rs6075337 C G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.55;AMR_AF=0.64;AN=2;ASN_AF=0.34;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.79;LDAF=0.5920;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18393499 rs6075338 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.55;AMR_AF=0.64;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.79;LDAF=0.5919;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18395988 rs6035037 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.27;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2359;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18414356 rs6035042 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.58;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=0.9729;ERATE=0.0375;EUR_AF=0.77;LDAF=0.7294;RSQ=0.9463;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18445963 rs6035051 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.67;AMR_AF=0.58;AN=2;ASN_AF=0.56;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5867;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 18446024 rs6111974 C A 100 PASS AA=c;AC=1;AF=0.55;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=0.9160;ERATE=0.0914;EUR_AF=0.50;LDAF=0.5454;RSQ=0.8544;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18462421 rs1055171 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.67;AMR_AF=0.77;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7916;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18462492 rs4813332 A G 100 PASS AA=N;AC=1;AF=0.71;AFR_AF=0.58;AMR_AF=0.71;AN=2;ASN_AF=0.75;AVGPOST=0.9800;ERATE=0.0349;EUR_AF=0.75;LDAF=0.7064;RSQ=0.9641;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18464101 rs2424213 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.24;AMR_AF=0.18;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1670;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 18464110 rs3827965 T C 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.67;AMR_AF=0.77;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7915;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18470646 rs3748449 A C 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.27;AMR_AF=0.16;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1944;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18470664 rs3748450 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.67;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7998;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18506616 rs911115 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9974;ERATE=0.0026;EUR_AF=0.96;LDAF=0.9050;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 18511456 rs6081189 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9316;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 18513350 rs41309927 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0218;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 18522933 rs2273525 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1549;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 18523002 rs2273526 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1467;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 18576912 rs1884875 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 19261623 rs1569767 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.28;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0022;EUR_AF=0.41;LDAF=0.4332;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 19560664 rs3790261 G A 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.49;AMR_AF=0.70;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.79;LDAF=0.6683;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 19634732 rs3790278 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.75;AMR_AF=0.59;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.64;LDAF=0.5631;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 19634747 rs3790279 T C 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.73;AMR_AF=0.59;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0015;EUR_AF=0.64;LDAF=0.5580;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 20021301 rs3828003 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.52;AMR_AF=0.33;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.3949;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20023174 rs3828004 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20029954 rs66621993 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.16;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2166;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20032998 rs2255255 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5411;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20033137 rs2255258 T A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7207;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20033242 rs2273057 A T 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5419;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20033319 rs2273058 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5411;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20033380 rs3817995 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.70;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5406;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20055800 rs73291608 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.39;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 20071634 rs6046614 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.86;AMR_AF=0.88;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8588;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 20144772 rs6081901 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4588;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 20257958 rs2424317 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1302;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20484043 rs2273528 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.19;AMR_AF=0.06;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1122;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 20517290 rs8114404 C G 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0124;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 20599885 rs73292790 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0134;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 20616052 rs16982059 G A 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0133;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 21312893 rs62217926 C G 100 PASS AA=C;AC=2;AF=0.05;AFR_AF=0.10;AMR_AF=0.04;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0487;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 21314176 rs62217928 T G 100 PASS AA=T;AC=2;AF=0.03;AFR_AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0321;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 21328952 rs62217931 G A 100 PASS AA=G;AC=2;AF=0.09;AFR_AF=0.26;AMR_AF=0.07;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0881;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 21494184 rs8192562 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0387;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.04 +20 22562674 rs1212275 T C 100 PASS AA=t;AC=1;AF=0.94;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.87;LDAF=0.9375;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 23016970 rs3746726 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.23;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2970;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 23017017 rs2567609 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.41;AMR_AF=0.48;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4693;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 23017044 rs3746728 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.24;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3002;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 23017082 rs2567608 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.55;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5095;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 23065209 rs3746731 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.35;AMR_AF=0.59;AN=2;ASN_AF=0.67;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5312;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 23065342 rs3746732 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.83;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7724;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 23472391 rs2983288 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9856;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 23584116 rs726217 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.12;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5269;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +20 23586360 rs2983640 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.09;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5192;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 23618395 rs6138024 T C 100 PASS AA=t;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9964;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9510;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-3.13,-0.47,-0.18 +20 23729722 rs3188314 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9931;ERATE=0.0035;EUR_AF=1.00;LDAF=0.9908;RSQ=0.7071;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.93,-0.01 +20 23731494 rs6076122 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.97;AMR_AF=0.71;AN=2;ASN_AF=0.90;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8109;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 23805832 rs6036548 G A 100 PASS AA=g;AC=1;AF=0.82;AFR_AF=0.88;AMR_AF=0.74;AN=2;ASN_AF=0.93;AVGPOST=0.9985;ERATE=0.0036;EUR_AF=0.74;LDAF=0.8218;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 23807028 rs4407312 A C 100 PASS AA=a;AC=1;AF=0.82;AFR_AF=0.85;AMR_AF=0.73;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8159;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 23860178 rs1799841 A G 100 PASS AA=N;AC=1;AF=0.54;AFR_AF=0.79;AMR_AF=0.53;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5433;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 24524218 rs4815274 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 24524245 rs4813519 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 24645939 rs2892217 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.98;AMR_AF=0.38;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.41;LDAF=0.6479;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 24959382 rs11087491 C G 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.45;AN=2;ASN_AF=0.60;AVGPOST=0.9778;ERATE=0.0658;EUR_AF=0.41;LDAF=0.4359;RSQ=0.9493;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 24959385 rs6083703 A C 100 PASS AA=-;AC=1;AF=0.64;AFR_AF=0.50;AMR_AF=0.63;AN=2;ASN_AF=0.92;AVGPOST=0.9860;ERATE=0.0136;EUR_AF=0.53;LDAF=0.6444;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 24959386 rs56312312 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1441;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 24993414 rs6132785 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.49;AMR_AF=0.27;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2656;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 24994289 rs6050249 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.34;AMR_AF=0.20;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1815;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +20 25004071 rs4813543 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9800;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 25011423 rs6050259 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2271;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25011639 rs60849220 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1139;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25062715 rs8123716 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9721;ERATE=0.0013;EUR_AF=0.10;LDAF=0.0571;RSQ=0.8110;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.36 +20 25190598 rs1007707 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.71;AMR_AF=0.43;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.49;LDAF=0.6426;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25195509 rs6050446 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9862;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 25252161 rs2281559 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.16;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1958;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25257260 rs2257370 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.19;LDAF=0.2024;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25259006 rs2228976 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.16;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1952;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25259807 rs2261115 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.37;AMR_AF=0.34;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5338;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25260931 rs2227890 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.45;AMR_AF=0.35;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5517;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25261784 rs2261747 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.36;AMR_AF=0.34;AN=2;ASN_AF=0.92;AVGPOST=0.9966;ERATE=0.0049;EUR_AF=0.43;LDAF=0.5279;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25262769 rs2227891 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1939;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25262789 rs2261790 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.35;AN=2;ASN_AF=0.93;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5492;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25264814 rs2227892 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.35;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.44;LDAF=0.5513;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25264910 rs2257712 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.35;AN=2;ASN_AF=0.93;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.44;LDAF=0.5509;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25271086 rs2257432 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.35;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.5503;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25274953 rs13043183 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.34;AN=2;ASN_AF=0.0035;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.28;LDAF=0.1608;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 25276297 rs1130694 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.37;AMR_AF=0.34;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5302;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25276343 rs2258728 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.35;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5480;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25282944 rs10966 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.5558;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25288632 rs6107027 G A 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.23;AMR_AF=0.57;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.3281;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 25303932 rs62213662 G A 100 PASS AA=G;AC=1;AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0494;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 25398790 rs6076347 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.2495;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 25398876 rs4815425 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.52;AMR_AF=0.62;AN=2;ASN_AF=0.07;AVGPOST=0.9906;ERATE=0.0112;EUR_AF=0.54;LDAF=0.4242;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 25436283 rs2235607 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.16;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1952;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25442997 rs559771 C G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.51;AMR_AF=0.33;AN=2;ASN_AF=0.32;AVGPOST=0.9675;ERATE=0.0450;EUR_AF=0.24;LDAF=0.3352;RSQ=0.9385;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.47,-0.00,-5.00 +20 25456888 rs437635 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.53;AMR_AF=0.36;AN=2;ASN_AF=0.93;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5707;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 25469844 rs2072977 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.16;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1965;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 29978216 rs2206381 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.88;AMR_AF=0.80;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.83;LDAF=0.8090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 30064331 rs1006459 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.89;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0013;EUR_AF=0.31;LDAF=0.4461;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 30070239 rs2233832 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1457;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 30231382 rs192726865 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 30347832 rs6060930 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.92;AMR_AF=0.51;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5604;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 30408306 rs34396614 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0139;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 30452782 rs4911536 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.16;AMR_AF=0.30;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2787;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 30729488 rs6089193 T C 100 PASS AA=.;AC=1;AF=0.62;AFR_AF=0.79;AMR_AF=0.53;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.42;LDAF=0.6242;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 30746248 rs6061195 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.92;AMR_AF=0.67;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.55;LDAF=0.7651;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 30753270 rs14316 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.95;AMR_AF=0.69;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7797;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 30795819 rs1923095 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.95;AMR_AF=0.69;AN=2;ASN_AF=0.98;AVGPOST=0.9733;ERATE=0.0068;EUR_AF=0.52;LDAF=0.7583;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.47 +20 30914706 rs3746606 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4072;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 30954295 rs2295454 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4186;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31022959 rs6058694 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31024274 rs4911231 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4190;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31025163 rs2295764 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4109;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31291161 rs9421 C T 100 PASS AA=c;AC=1;AF=0.61;AFR_AF=0.60;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6093;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31315862 rs2064936 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2039;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31315867 rs2064937 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.13;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2240;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31374259 rs2424913 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.65;AMR_AF=0.61;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.6549;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31374991 rs4911107 G A 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.50;AMR_AF=0.58;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5806;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31383353 rs910085 T G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5562;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31383530 rs875041 C T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.72;AMR_AF=0.58;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.6293;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31386347 rs6058891 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.88;AMR_AF=0.64;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.7135;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31386449 rs2424922 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.88;AMR_AF=0.64;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.7134;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31387954 rs1997797 C G 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.75;AMR_AF=0.62;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6801;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31388636 rs2424928 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.85;AMR_AF=0.63;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.7057;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31427635 rs2070090 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.45;AMR_AF=0.23;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2952;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31573528 rs2274343 A C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.84;AMR_AF=0.60;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5850;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31577394 rs6058991 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.24;AMR_AF=0.41;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0023;EUR_AF=0.32;LDAF=0.4324;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31583384 rs2070310 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4328;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31584178 rs6141862 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4127;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31585415 rs190097 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4323;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31585432 rs41312288 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.23;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0016;EUR_AF=0.16;LDAF=0.1658;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31590439 rs34427973 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31590745 rs6059011 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.07;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1156;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31598781 rs6120085 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2340;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31608250 rs6057703 C A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.77;AMR_AF=0.39;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4207;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31609581 rs17124003 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.47;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3069;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31660489 rs11700200 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2107;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31671209 rs13036385 G C 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2125;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31671599 rs4339026 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.32;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2285;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31671663 rs2424945 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.57;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3697;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31671693 rs3926669 C T 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.23;AMR_AF=0.32;AN=2;ASN_AF=0.20;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2367;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31678534 rs2070326 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.24;LDAF=0.2130;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31680234 rs2070327 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2692;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31685405 rs13041016 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.14;AMR_AF=0.29;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2043;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31688241 rs11699009 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.67;AMR_AF=0.55;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5145;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31688260 rs11696307 C T 100 PASS AA=c;AC=2;AF=0.48;AFR_AF=0.52;AMR_AF=0.54;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4785;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31688330 rs11696310 C T 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.54;AMR_AF=0.54;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4845;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 31876681 rs1078761 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3398;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31897554 rs1999663 G C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.79;AMR_AF=0.58;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.53;LDAF=0.6677;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31897592 rs73611706 T C 100 PASS AA=t;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0759;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 31975090 rs293732 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.69;AMR_AF=0.75;AN=2;ASN_AF=0.63;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6629;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 31981849 rs291700 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.52;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5841;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 32000351 rs291694 A G 100 PASS AA=g;AC=1;AF=0.67;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.64;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6693;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 32212690 rs3803939 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.56;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6654;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 32245869 rs3746461 C G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.72;AMR_AF=0.55;AN=2;ASN_AF=0.80;AVGPOST=0.9902;ERATE=0.0043;EUR_AF=0.51;LDAF=0.6375;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.27,-0.02 +20 32248163 rs3746460 C T 100 PASS AA=c;AC=1;AF=0.31;AFR_AF=0.28;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3119;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 32295541 rs910397 C T 100 PASS AA=c;AC=2;AF=0.63;AFR_AF=0.71;AMR_AF=0.53;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.50;LDAF=0.6275;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 32298323 rs2626529 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.71;AMR_AF=0.53;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6298;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +20 32319894 rs2281402 C T 100 PASS AA=N;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.53;AVGPOST=0.9834;ERATE=0.0011;EUR_AF=0.18;LDAF=0.2335;RSQ=0.9660;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.13,-0.47,-0.18 +20 32376745 rs140105337 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0124;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 32379263 rs2626551 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.96;AMR_AF=0.72;AN=2;ASN_AF=0.93;AVGPOST=0.9797;ERATE=0.0053;EUR_AF=0.62;LDAF=0.7919;RSQ=0.9589;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.44,-0.00 +20 33147737 rs6059915 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.78;AMR_AF=0.92;AN=2;ASN_AF=0.85;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.88;LDAF=0.8546;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +20 33337751 rs3787220 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.85;AMR_AF=0.93;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8574;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33370114 rs138060369 G A 100 PASS AA=G;AC=1;AF=0.0046;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0046;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 33572941 rs2425007 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.65;AMR_AF=0.82;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7591;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33574022 rs2425008 G C 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.40;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6325;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +20 33578899 rs2425009 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.83;AMR_AF=0.84;AN=2;ASN_AF=0.80;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8043;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33581955 rs2425012 G A 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.17;AMR_AF=0.55;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4418;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33583114 rs2425014 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.65;AMR_AF=0.82;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7609;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +20 33583331 rs2425015 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33584289 rs3746438 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.26;AMR_AF=0.57;AN=2;ASN_AF=0.61;AVGPOST=0.9977;ERATE=0.0023;EUR_AF=0.48;LDAF=0.4814;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33593457 rs3746431 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.38;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6316;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33594226 rs6060151 G T 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.37;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6294;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33642732 rs4911462 G T 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.38;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6316;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33642737 rs4911463 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.38;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6316;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33657126 rs1998233 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.83;AMR_AF=0.84;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8035;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33714187 rs2295887 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.18;AMR_AF=0.68;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5662;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33834708 rs3764733 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1453;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 33859675 rs11696548 C T 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.05;AVGPOST=0.9908;ERATE=0.0005;EUR_AF=0.17;LDAF=0.0986;RSQ=0.9654;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 33867697 rs619865 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9671;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 33971914 rs4911494 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.31;AMR_AF=0.68;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5932;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 34079200 rs224373 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.82;LDAF=0.9159;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.54,-0.00 +20 34205035 rs11698601 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.32;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1852;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +20 34218673 rs12481228 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0873;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34219496 rs6579255 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.40;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2212;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34219987 rs61191623 A C 100 PASS AA=a;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1221;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34219990 rs78084033 A C 100 PASS AA=a;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1221;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34219994 rs10211771 T C 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.42;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2386;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34220060 rs117034885 T C 100 PASS AA=t;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0109;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34243017 rs6121015 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.40;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2207;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34312658 rs11696947 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0928;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34457513 rs6121073 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.41;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2305;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34502107 rs17431878 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0883;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34535373 rs6088971 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2409;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34560526 rs11167280 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0896;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34596371 rs6060750 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2399;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 34775551 rs2247688 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.71;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.25;LDAF=0.3543;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.20,-0.44 +20 34782171 rs2295568 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.32;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 35422936 rs35707272 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.10;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0621;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 35507542 rs3748459 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.41;AMR_AF=0.27;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2412;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 35507621 rs3748461 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.18;AN=2;ASN_AF=0.0017;AVGPOST=0.9969;ERATE=0.0008;EUR_AF=0.22;LDAF=0.1582;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 35515825 rs150768309 A G 100 PASS AA=A;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 35661046 rs6017076 A T 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2500;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 35835657 rs11698281 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6700;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 35835889 rs1079657 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.77;AMR_AF=0.74;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6901;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 35838591 rs2050091 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9817;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 35852395 rs2076397 A C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7560;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 35865054 rs4608 C T 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.77;AMR_AF=0.74;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6906;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 36030939 rs1885257 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9856;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9845;RSQ=0.6630;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 36500313 rs717599 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.17;AMR_AF=0.30;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3080;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 36685915 rs2256288 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.98;AMR_AF=0.77;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8282;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 36841756 rs1534967 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.24;AMR_AF=0.44;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4146;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +20 36841914 rs3746471 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0020;EUR_AF=0.44;LDAF=0.3649;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +20 36845738 rs760998 C T 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.25;AMR_AF=0.33;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.31;LDAF=0.3503;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 36869378 rs149384259 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0146;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 36932660 rs1341023 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.20;AMR_AF=0.56;AN=2;ASN_AF=0.58;AVGPOST=0.9983;ERATE=0.0015;EUR_AF=0.52;LDAF=0.4705;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 36932676 rs1341024 G C 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.21;AMR_AF=0.56;AN=2;ASN_AF=0.59;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4763;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 36932798 rs5741798 C G 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.16;AMR_AF=0.28;AN=2;ASN_AF=0.45;AVGPOST=0.9983;ERATE=0.0027;EUR_AF=0.20;LDAF=0.2697;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 36965617 rs1131847 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.77;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6220;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 36993333 rs2232607 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0074;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 37377139 rs2254105 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.18;AN=2;ASN_AF=0.26;AVGPOST=0.9947;ERATE=0.0011;EUR_AF=0.25;LDAF=0.2295;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.80 +20 37383640 rs2748663 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.18;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2285;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37383841 rs2757521 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.18;AN=2;ASN_AF=0.27;AVGPOST=0.9841;ERATE=0.0160;EUR_AF=0.28;LDAF=0.2473;RSQ=0.9720;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37396120 rs2245231 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.48;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4227;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37396262 rs2245237 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2290;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37534582 rs12626105 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.38;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3620;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37534665 rs4812332 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.34;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3533;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37555116 rs3752290 G C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.55;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=0.9945;ERATE=0.0007;EUR_AF=0.35;LDAF=0.3974;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.62 +20 37570725 rs3752293 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.58;AMR_AF=0.38;AN=2;ASN_AF=0.37;AVGPOST=0.9990;ERATE=0.0010;EUR_AF=0.35;LDAF=0.4116;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37601243 rs16987712 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1696;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37635027 rs3752298 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.51;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.35;LDAF=0.3899;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37635028 rs79495439 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.08;AN=2;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0476;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 37654024 rs3752301 T G 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.16;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.22;LDAF=0.1663;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 39792063 rs2228246 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0951;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 39794489 rs6124323 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.75;AMR_AF=0.49;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6197;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 39797465 rs753381 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.97;AMR_AF=0.57;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.54;LDAF=0.7116;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 39832628 rs17265513 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.0886;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 39985847 rs6072350 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1014;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 39986085 rs12625565 A C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.44;AMR_AF=0.31;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3826;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 39987325 rs75320465 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0234;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 39990614 rs2235592 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3140;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 39990700 rs41278104 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.29;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1570;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 39991144 rs41307177 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1006;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 39991171 rs61739307 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1006;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.85,-0.00,-5.00 +20 40049099 rs6029672 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.49;AMR_AF=0.26;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.25;LDAF=0.3348;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 40076509 rs909882 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 40084399 rs3746540 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.38;AMR_AF=0.31;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3310;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 40111900 rs2143228 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.25;AMR_AF=0.23;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2743;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 40179909 rs6129863 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.66;AMR_AF=0.37;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.4360;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 40179920 rs6072417 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.64;AMR_AF=0.36;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.4309;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 40714479 rs2016647 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.21;AN=2;ASN_AF=0.07;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1579;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 40714524 rs722898 C G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.40;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4336;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 40714539 rs1569547 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.07;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.22;LDAF=0.1277;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 40743829 rs2076248 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.66;AMR_AF=0.57;AN=2;ASN_AF=0.57;AVGPOST=0.9952;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5679;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 41306600 rs2425516 A G 100 PASS AA=a;AC=1;AF=0.40;AFR_AF=0.48;AMR_AF=0.42;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4045;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 42089511 rs2235611 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.86;LDAF=0.8543;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.62,-0.00 +20 42164722 rs3746528 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1513;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 42196550 rs2067061 T G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.79;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.34;LDAF=0.4722;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 42205061 rs763227 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.53;AMR_AF=0.79;AN=2;ASN_AF=0.77;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7274;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +20 42225114 rs2664519 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.58;AMR_AF=0.80;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7482;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 42310509 rs442143 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.80;AMR_AF=0.84;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8321;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +20 42328639 rs285162 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9281;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 42747247 rs3810510 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.38;AMR_AF=0.11;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2416;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 42814931 rs6031442 T C 100 PASS AA=c;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.83;LDAF=0.8557;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 42815190 rs1883790 G A 100 PASS AA=a;AC=2;AF=0.84;AFR_AF=0.95;AMR_AF=0.87;AN=2;ASN_AF=0.74;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.83;LDAF=0.8406;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0152;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 42939750 rs6073401 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0497;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +20 42965863 rs3746570 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1476;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 42966025 rs1884612 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.24;AMR_AF=0.36;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2449;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 42969798 rs3761184 A G 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2253;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43034660 rs736824 T C 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.42;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5224;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43142720 rs41303901 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43251240 rs116962828 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0082;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43252915 rs244076 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.47;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0018;EUR_AF=0.17;LDAF=0.2209;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43264927 rs394105 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9902;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +20 43343997 rs185897223 C T 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0004;LDAF=0.0029;RSQ=0.9489;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.21 +20 43348735 rs2296530 C A 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.49;AMR_AF=0.42;AN=2;ASN_AF=0.34;AVGPOST=0.9279;ERATE=0.0340;EUR_AF=0.34;LDAF=0.3975;RSQ=0.8916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0103;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.40 +20 43378770 rs1111032 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.79;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5994;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43379264 rs6073538 A C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9880;ERATE=0.0031;EUR_AF=0.49;LDAF=0.5988;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43379454 rs13042905 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=0.9900;ERATE=0.0009;EUR_AF=0.49;LDAF=0.5957;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.34,-0.02,-1.32 +20 43547677 rs2075960 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.33;AN=2;ASN_AF=0.22;AVGPOST=0.9966;ERATE=0.0012;EUR_AF=0.24;LDAF=0.2358;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 43566787 rs11780 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.63;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9980;ERATE=0.0029;EUR_AF=0.35;LDAF=0.4331;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 43588802 rs2234200 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.49;AMR_AF=0.36;AN=2;ASN_AF=0.34;AVGPOST=0.9530;ERATE=0.0017;EUR_AF=0.25;LDAF=0.3419;RSQ=0.9239;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.95,-0.30,-0.30 +20 43803613 rs17333103 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43804522 rs2664581 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1120;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43804789 rs34885285 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9984;ERATE=0.0010;EUR_AF=0.17;LDAF=0.1136;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43804797 rs17424474 C A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9827;ERATE=0.0426;EUR_AF=0.23;LDAF=0.1655;RSQ=0.9591;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43835683 rs2233882 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1097;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43836173 rs2301366 T A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.51;AMR_AF=0.28;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2573;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43850143 rs2233895 T A 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1143;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43850400 rs2233896 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1015;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43850525 rs2233898 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1015;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43851094 rs2233901 G A 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1152;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43881630 rs6032073 A G 100 PASS AA=a;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.28;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43933021 rs2072788 G T 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.18;AMR_AF=0.34;AN=2;ASN_AF=0.73;AVGPOST=0.9956;ERATE=0.0009;EUR_AF=0.26;LDAF=0.3792;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 43933163 rs2233094 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.20;AMR_AF=0.34;AN=2;ASN_AF=0.73;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3820;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +20 43933196 rs2233093 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.31;AMR_AF=0.17;AN=2;ASN_AF=0.02;AVGPOST=0.9954;ERATE=0.0018;EUR_AF=0.22;LDAF=0.1799;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43936931 rs2743317 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1209;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43942676 rs2076026 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.30;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1042;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 43944958 rs2741500 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1206;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 43964407 rs2072791 G C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.66;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7934;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 44002665 rs2231626 C G 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.84;AMR_AF=0.78;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7262;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44052992 rs13217 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3223;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44053069 rs2741566 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6829;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44054349 rs707577 T C 100 PASS AA=t;AC=1;AF=0.70;AFR_AF=0.83;AMR_AF=0.70;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7053;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44174423 rs765156 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.67;AMR_AF=0.72;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0016;EUR_AF=0.69;LDAF=0.6723;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44238741 rs2245898 T G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3926;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44259490 rs1487323 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.46;AMR_AF=0.39;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3889;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44259549 rs2272961 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.25;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2354;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44259673 rs1487322 G T 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.45;AMR_AF=0.29;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3693;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44314609 rs232729 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0008;EUR_AF=0.61;LDAF=0.8191;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.11,-0.00 +20 44333052 rs980984 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.34;AN=2;ASN_AF=0.76;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4896;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44334588 rs232290 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.91;AMR_AF=0.53;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6462;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44352620 rs6017667 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.74;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4749;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44352740 rs1487317 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.74;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4749;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44417643 rs6032537 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.60;AMR_AF=0.76;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44417675 rs6032538 G C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.60;AMR_AF=0.76;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6750;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44418564 rs3746493 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.58;AMR_AF=0.72;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6486;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44420637 rs2664539 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.30;AMR_AF=0.68;AN=2;ASN_AF=0.53;AVGPOST=0.9717;ERATE=0.0045;EUR_AF=0.67;LDAF=0.5457;RSQ=0.9588;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.39,-0.23,-2.20 +20 44420665 rs6130935 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.11;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.0356;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.850:-0.17,-0.49,-2.80 +20 44420682 rs2664591 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.64;AMR_AF=0.77;AN=2;ASN_AF=0.62;AVGPOST=0.9958;ERATE=0.0006;EUR_AF=0.73;LDAF=0.6854;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.33,-0.01,-1.74 +20 44422705 rs6032545 G T 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.30;AMR_AF=0.68;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5540;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44452697 rs4629 C A 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.16;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4506;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44469290 rs4638862 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.07;AMR_AF=0.48;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3994;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44505973 rs2903808 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.42;AMR_AF=0.64;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5654;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44506418 rs1045493 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.33;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4955;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44517360 rs1516580 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.50;AMR_AF=0.68;AN=2;ASN_AF=0.65;AVGPOST=0.9924;ERATE=0.0070;EUR_AF=0.62;LDAF=0.6114;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44518843 rs3817731 A T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.45;AMR_AF=0.69;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6060;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44519643 rs2868362 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.13;AMR_AF=0.58;AN=2;ASN_AF=0.44;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.56;LDAF=0.4338;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +20 44522594 rs4810476 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6622;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44523248 rs2075962 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.56;AMR_AF=0.69;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6349;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44523547 rs2075961 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.61;AMR_AF=0.70;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.65;LDAF=0.6596;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44523553 rs199925152 G T 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44523782 rs4608591 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6614;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44678348 rs77916378 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 44684978 rs2297201 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1394;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44691350 rs1537028 T G 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.29;AMR_AF=0.41;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4101;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 44746942 rs11569301 C T 100 PASS AA=c;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0231;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44746982 rs1883832 T C 100 PASS AA=c;AC=2;AF=0.76;AFR_AF=0.98;AMR_AF=0.73;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7556;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 44750424 rs11569315 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0073;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44757018 rs73310754 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44806875 rs2281335 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.18;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.29;LDAF=0.2389;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 44983845 rs201199146 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +20 44985307 rs911435 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +20 44996182 rs2257495 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9871;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 45003326 rs2261213 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9682;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.78,-0.00 +20 45131155 rs41283032 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0124;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 45204266 rs1880898 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.46;AMR_AF=0.59;AN=2;ASN_AF=0.59;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.62;LDAF=0.5708;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 45318042 rs2664523 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.17;AMR_AF=0.13;AN=2;ASN_AF=0.29;AVGPOST=0.9934;ERATE=0.0006;EUR_AF=0.08;LDAF=0.1632;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-3.85,-0.01,-1.58 +20 45318069 rs2664574 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.29;AMR_AF=0.15;AN=2;ASN_AF=0.30;AVGPOST=0.9940;ERATE=0.0005;EUR_AF=0.10;LDAF=0.2018;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.49 +20 45354291 rs2235491 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.34;AMR_AF=0.14;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1424;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 45797883 rs3091653 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.22;AMR_AF=0.53;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4253;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 45853037 rs2664544 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9045;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 45856045 rs1124178 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9035;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 45920530 rs114364441 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0101;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 46267950 rs4810648 C T 100 PASS AA=T;AC=1;AF=0.97;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9687;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 46292149 rs2235734 T G 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9975;ERATE=0.0018;EUR_AF=0.33;LDAF=0.3179;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 46294725 rs2076545 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.26;AMR_AF=0.48;AN=2;ASN_AF=0.58;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.42;LDAF=0.4352;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 46313135 rs2297586 C T 100 PASS AA=t;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9979;ERATE=0.0026;EUR_AF=0.27;LDAF=0.2590;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 46331235 rs143974642 C G 100 PASS AA=C;AC=1;AF=0.0032;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0007;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 46365571 rs3810526 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.83;AMR_AF=0.58;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6572;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47244523 rs8121156 A G 100 PASS AA=a;AC=1;AF=0.28;AFR_AF=0.37;AMR_AF=0.34;AN=2;ASN_AF=0.14;AVGPOST=0.9978;ERATE=0.0008;EUR_AF=0.28;LDAF=0.2769;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.60 +20 47249077 rs144664036 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0005;LDAF=0.0067;RSQ=0.9749;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47249189 rs4413212 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.44;AMR_AF=0.47;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4173;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47253150 rs2664521 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9940;ERATE=0.0006;EUR_AF=0.95;LDAF=0.9791;RSQ=0.8931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.42,-0.00 +20 47256300 rs6019339 C T 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.53;AMR_AF=0.34;AN=2;ASN_AF=0.22;AVGPOST=0.9992;ERATE=0.0054;EUR_AF=0.25;LDAF=0.3184;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 47256479 rs4611698 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.36;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2756;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47258763 rs16993997 C T 100 PASS AA=c;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.18;LDAF=0.1431;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47260936 rs6019344 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.84;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5650;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 47261017 rs6066802 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.22;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3040;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47262549 rs6012504 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.36;AMR_AF=0.11;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0013;EUR_AF=0.07;LDAF=0.1476;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47267480 rs41283556 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1435;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47267940 rs61748372 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1435;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47269233 rs41283558 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1417;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47269874 rs742643 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.38;AMR_AF=0.11;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1523;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47273543 rs7271528 G C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=0.9960;ERATE=0.0056;EUR_AF=0.18;LDAF=0.1694;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.11,-0.64 +20 47273726 rs55904123 C T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.18;LDAF=0.1486;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47307618 rs3746820 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.60;AMR_AF=0.21;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2614;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47317276 rs35913794 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.54;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2445;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47342814 rs12480096 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.11;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1106;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47351045 rs185145060 G A 100 PASS AA=G;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0005;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47361519 rs3746816 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.31;AMR_AF=0.48;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3766;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47568009 rs2295029 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0073;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47580347 rs2295031 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.59;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3423;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47585642 rs3764683 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.36;AMR_AF=0.37;AN=2;ASN_AF=0.52;AVGPOST=0.9947;ERATE=0.0057;EUR_AF=0.27;LDAF=0.3745;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47604825 rs4810905 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3049;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47626736 rs2295579 A T 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.59;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3423;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47626847 rs2295580 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.59;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3419;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47628434 rs2273531 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.59;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3423;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47630449 rs2281582 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.23;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2080;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47639737 rs7270848 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.57;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.87,-0.01,-5.00 +20 47682893 rs2246266 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3058;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 47685320 rs2227946 G C 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.23;AMR_AF=0.20;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47839591 rs2273145 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.19;AMR_AF=0.18;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1568;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47841660 rs11553387 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.19;AMR_AF=0.18;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1568;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47845220 rs238165 T A 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6458;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47850182 rs238148 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6458;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47852822 rs238152 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.57;AMR_AF=0.65;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6088;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47865372 rs238208 G A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.93;AMR_AF=0.74;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.84;LDAF=0.7810;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47865509 rs238209 G A 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.59;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6426;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47865784 rs6512577 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.18;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1541;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47871197 rs56335217 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1463;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47872327 rs238220 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.61;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6476;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47872377 rs78078685 C G 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6175;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47874005 rs3021 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1595;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47886684 rs57950 G A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.93;AMR_AF=0.75;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7824;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 47892270 rs238191 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6434;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 48129706 rs5629 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.24;LDAF=0.2221;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 48130982 rs7274202 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2225;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 48140682 rs5628 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.06;LDAF=0.1046;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 48184560 rs116939356 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9777;ERATE=0.0015;EUR_AF=0.08;LDAF=0.0661;RSQ=0.8524;SNPSOURCE=LOWCOV,EXOME;THETA=0.0099;VT=SNP GT:DS:GL 1|0:0.850:-0.48,-0.48,-0.48 +20 48253996 rs16994756 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0160;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 48257149 rs421801 C T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.77;AMR_AF=0.77;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7916;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 48259130 rs16994762 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0160;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 48429508 rs58677849 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.49;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9412;ERATE=0.0021;EUR_AF=0.36;LDAF=0.4214;RSQ=0.9116;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.900:-0.19,-0.46,-2.46 +20 48429509 rs6020064 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.47;AMR_AF=0.40;AN=2;ASN_AF=0.48;AVGPOST=0.9348;ERATE=0.0046;EUR_AF=0.35;LDAF=0.4133;RSQ=0.9020;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:0.950:-0.19,-0.46,-2.45 +20 48491258 rs542234 T G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8095;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 48494650 rs6020100 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.55;AMR_AF=0.40;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3679;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 48522330 rs495337 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.43;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3291;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 48522585 rs492702 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.14;AMR_AF=0.53;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4844;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 48524827 rs2769982 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.15;AMR_AF=0.53;AN=2;ASN_AF=0.79;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4873;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 48561893 rs4810993 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9186;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 48599549 rs4647954 T C 100 PASS AA=c;AC=2;AF=0.42;AFR_AF=0.78;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.4169;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +20 48599561 rs4647955 G C 100 PASS AA=c;AC=2;AF=0.26;AFR_AF=0.70;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2642;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.81,-0.00 +20 48600557 rs4647959 T C 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.70;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2646;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 48600631 rs4647958 T C 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.70;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2645;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 48600809 rs1063210 G A 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.70;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2645;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 48600924 rs4647957 C T 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.28;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1588;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +20 48729677 rs126907 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9942;ERATE=0.0007;EUR_AF=0.92;LDAF=0.9569;RSQ=0.9432;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +20 48746189 rs6122878 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.36;AMR_AF=0.28;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2953;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 48770159 rs232733 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9883;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9934;RSQ=0.2466;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +20 48808011 rs4253439 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.23;AMR_AF=0.39;AN=2;ASN_AF=0.42;AVGPOST=0.8650;ERATE=0.0098;EUR_AF=0.47;LDAF=0.3949;RSQ=0.7835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.750:-3.09,-0.47,-0.18 +20 49191228 rs1885177 A C 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.31;AMR_AF=0.48;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5032;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 49214156 rs6020624 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.75;AMR_AF=0.66;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7054;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.60,-0.00 +20 49236478 rs6122953 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.23;AMR_AF=0.63;AN=2;ASN_AF=0.68;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5673;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 49458484 rs2145694 G C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=0.9880;ERATE=0.0140;EUR_AF=0.12;LDAF=0.1154;RSQ=0.9555;SNPSOURCE=LOWCOV,EXOME;THETA=0.0103;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 49507892 rs761240 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.94;LDAF=0.9694;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 49620783 rs1054268 G T 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.32;AMR_AF=0.82;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.6747;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 49621149 rs6122993 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.34;AMR_AF=0.82;AN=2;ASN_AF=0.65;AVGPOST=0.9929;ERATE=0.0006;EUR_AF=0.85;LDAF=0.6774;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.09,-0.00 +20 50071258 rs228840 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.66;AMR_AF=0.81;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7820;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 50140627 rs3746420 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.05;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.06;LDAF=0.0558;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50217738 rs145451979 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0055;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50224161 rs2273089 C T 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.57;AMR_AF=0.53;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4328;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +20 50235577 rs2295004 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1152;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 50241714 rs2235859 C A 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.61;AMR_AF=0.56;AN=2;ASN_AF=0.27;AVGPOST=0.9975;ERATE=0.0019;EUR_AF=0.46;LDAF=0.4616;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 50244098 rs2426317 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.50;AMR_AF=0.76;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7303;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50287736 rs2255341 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5480;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50287790 rs2255342 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.50;AMR_AF=0.73;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7161;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50290654 rs6091346 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.50;AMR_AF=0.77;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.78;LDAF=0.7231;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50310668 rs4811225 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1303;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 50407162 rs6021437 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.20;AMR_AF=0.36;AN=2;ASN_AF=0.57;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3658;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50407502 rs6126344 A C 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3500;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50408482 rs6013281 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 50705211 rs2273382 A G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.55;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4588;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 50769183 rs3746415 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1670;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50769379 rs3746414 C T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.29;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1760;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50769549 rs3746413 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 50782608 rs2273472 G T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.36;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2450;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 51870849 rs739870 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.79;AVGPOST=0.9988;ERATE=0.0014;EUR_AF=0.72;LDAF=0.8032;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 52198340 rs16998248 T A 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1595;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 52198967 rs1326862 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0951;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 52645166 rs158551 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1362;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 52645534 rs466264 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.64;AMR_AF=0.54;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6846;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 52674615 rs465184 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.97;AMR_AF=0.65;AN=2;ASN_AF=0.81;AVGPOST=0.9979;ERATE=0.0063;EUR_AF=0.59;LDAF=0.7448;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0247;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 52675188 rs394732 G T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.79;AMR_AF=0.37;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5443;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 52773734 rs116065115 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 52786219 rs2296241 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.51;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.52;LDAF=0.4712;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 53259964 rs6064099 G C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.57;AMR_AF=0.22;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3794;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 54961321 rs2230743 G A 100 PASS AA=G;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0018;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +20 54961463 rs1047972 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.84;AMR_AF=0.90;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8445;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 54974424 rs2426617 C A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.95;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9511;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 55012318 rs911159 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1440;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 55025762 rs6069753 G A 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.78;AMR_AF=0.36;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4602;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 55033420 rs35031530 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.27;AMR_AF=0.03;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.0026;LDAF=0.1359;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 55033476 rs3746623 C G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.38;AMR_AF=0.46;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.5146;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 55033647 rs3746625 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.37;AMR_AF=0.47;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.5146;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 55033713 rs3746626 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.37;AMR_AF=0.47;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.5151;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 55088404 rs1059768 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8661;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.02,-0.00 +20 55108617 rs3209183 C A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.96;AMR_AF=0.56;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6614;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.35,-0.02 +20 55111371 rs2296130 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.54;AMR_AF=0.37;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3501;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 55746096 rs141004050 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0059;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 55749981 rs114761082 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0060;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 55929860 rs35413125 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0128;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 55982579 rs3764719 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.90;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3361;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 56090807 rs6025601 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.41;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3154;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 56098733 rs6025606 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.92;AMR_AF=0.68;AN=2;ASN_AF=0.76;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.65;LDAF=0.7442;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 56136536 rs1042521 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4232;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 56137807 rs1042523 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.31;AMR_AF=0.37;AN=2;ASN_AF=0.03;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3225;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 56137834 rs1062601 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.03;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.53;LDAF=0.3226;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 56137895 rs707555 G C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.84;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8674;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 56138040 rs2070755 G C 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.37;AMR_AF=0.54;AN=2;ASN_AF=0.32;AVGPOST=0.9966;ERATE=0.0023;EUR_AF=0.53;LDAF=0.4387;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 56139403 rs2070756 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.95;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7963;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 56179586 rs6123710 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.37;AN=2;ASN_AF=0.50;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3293;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 56186884 rs2865394 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9936;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +20 56190634 rs2073145 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.20;AMR_AF=0.68;AN=2;ASN_AF=0.73;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5765;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 56227514 rs6025698 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.53;AMR_AF=0.20;AN=2;ASN_AF=0.33;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2869;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 56227589 rs41314918 C G 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.27;AMR_AF=0.04;AN=2;AVGPOST=0.9985;ERATE=0.0010;EUR_AF=0.03;LDAF=0.0789;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 56227673 rs73302914 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.27;AMR_AF=0.04;AN=2;AVGPOST=0.9922;ERATE=0.0006;EUR_AF=0.03;LDAF=0.0783;RSQ=0.9663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 56726107 rs6070358 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +20 56886062 rs542165 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.68;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 57009796 rs2234487 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.39;AMR_AF=0.31;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4263;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57244493 rs2296524 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.46;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.51;LDAF=0.4805;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57268867 rs3746396 C A 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.22;AMR_AF=0.32;AN=2;ASN_AF=0.43;AVGPOST=0.9965;ERATE=0.0010;EUR_AF=0.37;LDAF=0.3446;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57268994 rs6100166 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9879;ERATE=0.0039;EUR_AF=0.44;LDAF=0.4237;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57290347 rs6026468 C G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.83;AMR_AF=0.43;AN=2;ASN_AF=0.45;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5733;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.76 +20 57415536 rs200256285 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +20 57430020 rs200585625 A G 100 PASS AA=A;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9968;ERATE=0.0005;LDAF=0.0025;RSQ=0.5722;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57478807 rs7121 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.83;AMR_AF=0.63;AN=2;ASN_AF=0.64;AVGPOST=0.9973;ERATE=0.0244;EUR_AF=0.45;LDAF=0.6136;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57565943 rs163782 G C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.79;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8240;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57571763 rs9760 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.72;AMR_AF=0.66;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7039;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57572675 rs163785 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 57599016 rs163777 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 57782031 rs146524649 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0071;RSQ=0.9671;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 57829301 rs259956 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.30;AMR_AF=0.57;AN=2;ASN_AF=0.91;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5975;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 58420336 rs1416388 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.97;AMR_AF=0.64;AN=2;ASN_AF=0.77;AVGPOST=0.9988;ERATE=0.0008;EUR_AF=0.54;LDAF=0.7136;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +20 58441644 rs149054585 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 59829847 rs3752252 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.38;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5557;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60485627 rs2427240 C T 100 PASS AA=c;AC=1;AF=0.73;AFR_AF=0.52;AMR_AF=0.86;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7349;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60498459 rs2427245 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.61;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9969;ERATE=0.0072;EUR_AF=0.05;LDAF=0.1794;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60503350 rs6142884 A G 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.26;AMR_AF=0.57;AN=2;ASN_AF=0.85;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5590;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60512028 rs3761222 G C 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.41;AVGPOST=0.9970;ERATE=0.0046;EUR_AF=0.23;LDAF=0.2546;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60572663 rs2296081 C A 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.66;LDAF=0.6211;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60704972 rs139247673 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.06;AN=2;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.0040;LDAF=0.0127;RSQ=0.9564;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60712511 rs2281740 A G 100 PASS AA=.;AC=1;AF=0.73;AFR_AF=0.46;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7280;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60713311 rs7076 G A 100 PASS AA=.;AC=1;AF=0.65;AFR_AF=0.16;AMR_AF=0.76;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6545;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60713332 rs1135961 A G 100 PASS AA=.;AC=1;AF=0.87;AFR_AF=0.90;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8693;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60740447 rs2295208 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0923;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60740585 rs73917807 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.37;AMR_AF=0.07;AN=2;ASN_AF=0.17;AVGPOST=0.9900;ERATE=0.0056;EUR_AF=0.09;LDAF=0.1705;RSQ=0.9766;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-0.43,-0.20,-5.00 +20 60773041 rs6062140 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.32;AMR_AF=0.34;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0022;EUR_AF=0.33;LDAF=0.4167;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60773684 rs4925355 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.55;AMR_AF=0.69;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6670;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60776182 rs1054885 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.31;AMR_AF=0.30;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.31;LDAF=0.3964;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-3.85,-0.00,-5.00 +20 60791404 rs3787429 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.61;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=0.9787;ERATE=0.0226;EUR_AF=0.42;LDAF=0.4645;RSQ=0.9700;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-3.28,-0.00,-5.00 +20 60831300 rs6089706 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.68;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8852;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60848348 rs2236526 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.11;AMR_AF=0.52;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4109;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60861782 rs2297592 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.45;AMR_AF=0.33;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4296;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60864390 rs3746657 C T 100 PASS AA=c;AC=1;AF=0.45;AFR_AF=0.25;AMR_AF=0.53;AN=2;ASN_AF=0.55;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4452;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60881330 rs2427273 G A 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.60;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9994;ERATE=0.0014;EUR_AF=0.90;LDAF=0.8445;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60881780 rs2427275 T C 100 PASS AA=t;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9657;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +20 60882888 rs2427278 A G 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.86;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9476;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.96,-0.00 +20 60885142 rs2379129 C A 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.08;AMR_AF=0.47;AN=2;ASN_AF=0.52;AVGPOST=0.9960;ERATE=0.0006;EUR_AF=0.42;LDAF=0.3768;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60885448 rs944897 A G 100 PASS AA=g;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9757;ERATE=0.0067;EUR_AF=0.98;LDAF=0.9616;RSQ=0.7718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.94,-0.01 +20 60886611 rs2297590 C T 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.20;AMR_AF=0.53;AN=2;ASN_AF=0.43;AVGPOST=0.9737;ERATE=0.0156;EUR_AF=0.52;LDAF=0.4291;RSQ=0.9605;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.85 +20 60887581 rs944895 G A 100 PASS AA=g;AC=2;AF=0.67;AFR_AF=0.57;AMR_AF=0.71;AN=2;ASN_AF=0.74;AVGPOST=0.9947;ERATE=0.0032;EUR_AF=0.65;LDAF=0.6682;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.34,-0.26 +20 60887691 rs41307205 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.0035;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0443;RSQ=0.9637;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60891702 rs142866635 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9989;ERATE=0.0003;LDAF=0.0078;RSQ=0.9514;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.15 +20 60892116 rs2236521 G A 100 PASS AA=-;AC=2;AF=0.51;AFR_AF=0.16;AMR_AF=0.52;AN=2;ASN_AF=0.77;AVGPOST=0.9981;ERATE=0.0034;EUR_AF=0.55;LDAF=0.5132;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +20 60892526 rs2427281 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9985;RSQ=0.3884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60892692 rs6062216 C T 100 PASS AA=t;AC=2;AF=0.88;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.96;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.90;LDAF=0.8836;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.10,-0.00 +20 60893639 rs6089732 G C 100 PASS AA=-;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.24;AN=2;ASN_AF=0.40;AVGPOST=0.9931;ERATE=0.0006;EUR_AF=0.20;LDAF=0.2266;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60895738 rs6089346 A G 100 PASS AA=-;AC=2;AF=0.89;AFR_AF=0.70;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8926;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +20 60897071 rs2274936 A G 100 PASS AA=g;AC=2;AF=0.86;AFR_AF=0.70;AMR_AF=0.82;AN=2;ASN_AF=0.95;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.91;LDAF=0.8582;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60897487 rs2274934 C T 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.13;AMR_AF=0.51;AN=2;ASN_AF=0.77;AVGPOST=0.9811;ERATE=0.0018;EUR_AF=0.57;LDAF=0.5110;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.12,-0.03 +20 60898505 rs2379128 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=0.9923;ERATE=0.0011;EUR_AF=0.65;LDAF=0.6460;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +20 60899206 rs2427283 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.52;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6766;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60900481 rs2427284 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.82;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=0.9942;ERATE=0.0008;EUR_AF=0.93;LDAF=0.9189;RSQ=0.9735;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +20 60900579 rs2427285 C A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.82;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9218;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60902490 rs944892 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.78;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.90;LDAF=0.9000;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60902544 rs944891 A C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.78;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8976;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60902883 rs4925375 C T 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.60;AMR_AF=0.76;AN=2;ASN_AF=0.90;AVGPOST=0.9975;ERATE=0.0011;EUR_AF=0.69;LDAF=0.7361;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60904853 rs2427286 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.87;AMR_AF=0.96;AN=2;ASN_AF=0.98;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.93;LDAF=0.9335;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +20 60905717 rs2095235 T C 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.32;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7543;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60905878 rs3810548 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.47;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8080;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.06,-0.87,-5.00 +20 60906055 rs73613564 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.08;AMR_AF=0.59;AN=2;ASN_AF=0.77;AVGPOST=0.9909;ERATE=0.0007;EUR_AF=0.65;LDAF=0.5402;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.02,-1.46 +20 60907446 rs2151513 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.35;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.92;LDAF=0.7824;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60907675 rs6142734 G A 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.32;AMR_AF=0.77;AN=2;ASN_AF=0.95;AVGPOST=0.9968;ERATE=0.0013;EUR_AF=0.87;LDAF=0.7499;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.47,-0.00,-5.00 +20 60908964 rs13044266 G A 100 PASS AA=g;AC=1;AF=0.78;AFR_AF=0.34;AMR_AF=0.80;AN=2;ASN_AF=0.95;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.91;LDAF=0.7751;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-0.38,-0.24,-5.00 +20 60908969 rs13042941 T C 100 PASS AA=c;AC=1;AF=0.77;AFR_AF=0.34;AMR_AF=0.80;AN=2;ASN_AF=0.94;AVGPOST=0.9883;ERATE=0.0037;EUR_AF=0.90;LDAF=0.7648;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-3.32,-0.00,-5.00 +20 60909060 rs13038331 A G 100 PASS AA=a;AC=1;AF=0.81;AFR_AF=0.48;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8080;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60909316 rs6062223 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.23;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0877;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60912683 rs2427289 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.40;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7910;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60913495 rs2151512 T C 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.09;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5606;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60920887 rs11204472 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.16;AMR_AF=0.62;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5760;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60921643 rs4925229 T C 100 PASS AA=T;AC=1;AF=0.88;AFR_AF=0.64;AMR_AF=0.85;AN=2;ASN_AF=0.97;AVGPOST=0.9969;ERATE=0.0020;EUR_AF=0.98;LDAF=0.8782;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.09 +20 60921701 rs4925387 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9140;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-1.53,-0.01,-5.00 +20 60921896 rs4925388 A G 100 PASS AA=a;AC=1;AF=0.88;AFR_AF=0.64;AMR_AF=0.85;AN=2;ASN_AF=0.97;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.98;LDAF=0.8770;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60927349 rs483876 C T 100 PASS AA=c;AC=1;AF=0.80;AFR_AF=0.46;AMR_AF=0.80;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.92;LDAF=0.8055;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60927412 rs624313 G A 100 PASS AA=g;AC=1;AF=0.57;AFR_AF=0.16;AMR_AF=0.61;AN=2;ASN_AF=0.77;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5724;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60937597 rs477859 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.81;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8441;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60962624 rs755726 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.60;AMR_AF=0.43;AN=2;ASN_AF=0.11;AVGPOST=0.9989;ERATE=0.0021;EUR_AF=0.39;LDAF=0.3697;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60963494 rs6089356 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2124;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60966318 rs6089219 G T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.68;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.92;LDAF=0.8782;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 60966520 rs78388542 A T 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0325;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60968596 rs1570027 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.11;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2001;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60971327 rs748037 A C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.88;AMR_AF=0.60;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5275;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 60987940 rs139582052 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0141;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60989365 rs3810553 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.46;AVGPOST=0.9947;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3197;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.49 +20 60990170 rs911079 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.47;AVGPOST=0.9963;ERATE=0.0007;EUR_AF=0.34;LDAF=0.3221;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.65,-4.70 +20 60990606 rs3810554 A C 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.47;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3283;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 60992402 rs6061521 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.17;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4388;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +20 61040453 rs6061243 C G 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.71;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=0.9877;ERATE=0.0063;EUR_AF=0.45;LDAF=0.5080;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61040951 rs6587239 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.73;AMR_AF=0.45;AN=2;ASN_AF=0.44;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5103;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61041653 rs6061244 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.53;AMR_AF=0.32;AN=2;ASN_AF=0.20;AVGPOST=0.9942;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3547;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.65,-4.70 +20 61048549 rs41305803 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9931;ERATE=0.0005;EUR_AF=0.44;LDAF=0.4199;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61162267 rs6062251 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.69;AMR_AF=0.58;AN=2;ASN_AF=0.33;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.61;LDAF=0.5533;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61287865 rs199951467 T C 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0008;RSQ=0.7811;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.15 +20 61287939 rs79373363 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9957;ERATE=0.0006;LDAF=0.0152;RSQ=0.8799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-1.73,-0.01,-5.00 +20 61292536 rs59460798 C T 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1325;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61428423 rs11696245 A C 100 PASS AA=c;AC=1;AF=0.58;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.58;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5823;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61429925 rs2294982 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0599;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61442996 rs2075775 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.29;AVGPOST=0.9946;ERATE=0.0005;EUR_AF=0.03;LDAF=0.1062;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +20 61444697 rs6122315 G C 100 PASS AA=N;AC=1;AF=0.37;AFR_AF=0.41;AMR_AF=0.34;AN=2;ASN_AF=0.45;AVGPOST=0.8548;ERATE=0.0212;EUR_AF=0.31;LDAF=0.3793;RSQ=0.7464;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:0.800:-0.48,-0.48,-0.48 +20 61448933 rs2273078 C A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.24;AMR_AF=0.16;AN=2;ASN_AF=0.28;AVGPOST=0.9500;ERATE=0.0151;EUR_AF=0.08;LDAF=0.1928;RSQ=0.8864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.97,-0.46,-0.18 +20 61453549 rs2294988 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.19;AMR_AF=0.32;AN=2;ASN_AF=0.24;AVGPOST=0.9986;ERATE=0.0007;EUR_AF=0.32;LDAF=0.2693;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61458547 rs2249766 A T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.80;AMR_AF=0.54;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.6065;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61460338 rs6062700 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.80;AMR_AF=0.54;AN=2;ASN_AF=0.73;AVGPOST=0.9972;ERATE=0.0005;EUR_AF=0.42;LDAF=0.6056;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.44,-0.01,-1.58 +20 61467800 rs760087 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.43;AVGPOST=0.9942;ERATE=0.0026;EUR_AF=0.17;LDAF=0.2383;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61467898 rs910152 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.94;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9955;ERATE=0.0011;EUR_AF=0.87;LDAF=0.9126;RSQ=0.9792;SNPSOURCE=LOWCOV,EXOME;THETA=0.0108;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.57,-0.00 +20 61468571 rs2294995 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.96;AMR_AF=0.69;AN=2;ASN_AF=0.59;AVGPOST=0.9765;ERATE=0.0202;EUR_AF=0.69;LDAF=0.7212;RSQ=0.9590;SNPSOURCE=LOWCOV,EXOME;THETA=0.0130;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61512606 rs910148 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9942;ERATE=0.0006;EUR_AF=0.98;LDAF=0.9875;RSQ=0.8117;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61524133 rs2294998 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.55;AMR_AF=0.30;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3629;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61527563 rs2013097 T C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.42;AMR_AF=0.54;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.41;LDAF=0.4850;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61528074 rs910149 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.94;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.46;LDAF=0.6373;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61528271 rs1883847 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.31;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.18;LDAF=0.2562;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61528306 rs1883848 A G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.42;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9985;ERATE=0.0012;EUR_AF=0.36;LDAF=0.4693;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +20 61541028 rs2295001 C G 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.32;AMR_AF=0.31;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2674;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61588159 rs2245341 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.84;AMR_AF=0.69;AN=2;ASN_AF=0.73;AVGPOST=0.9924;ERATE=0.0016;EUR_AF=0.70;LDAF=0.7377;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61588745 rs2427457 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.24;AMR_AF=0.54;AN=2;ASN_AF=0.73;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5059;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61594679 rs2427463 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9845;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61595537 rs2427464 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.79;AMR_AF=0.93;AN=2;ASN_AF=0.91;AVGPOST=0.9665;ERATE=0.0640;EUR_AF=0.87;LDAF=0.8598;RSQ=0.8754;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61595636 rs2248900 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.20;AVGPOST=0.9926;ERATE=0.0021;EUR_AF=0.20;LDAF=0.1746;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61598899 rs3746750 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.37;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.62;LDAF=0.5945;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61869223 rs6062855 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.39;AMR_AF=0.50;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4688;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.14,-0.00 +20 61869826 rs2273487 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.39;AMR_AF=0.50;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4673;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61870465 rs1075557 A G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.52;AVGPOST=0.9981;ERATE=0.0009;EUR_AF=0.45;LDAF=0.4625;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61870634 rs1075556 A G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.38;AMR_AF=0.49;AN=2;ASN_AF=0.52;AVGPOST=0.9970;ERATE=0.0022;EUR_AF=0.46;LDAF=0.4644;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61872905 rs1047826 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.86;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6915;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.08,-0.04 +20 61878950 rs872808 A C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.49;AMR_AF=0.41;AN=2;ASN_AF=0.54;AVGPOST=0.9957;ERATE=0.0009;EUR_AF=0.37;LDAF=0.4489;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +20 61880169 rs1129659 T G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.44;AMR_AF=0.41;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4374;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61880274 rs2273497 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.74;AMR_AF=0.70;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7344;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.83,-0.00 +20 61881296 rs927081 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.68;AMR_AF=0.59;AN=2;ASN_AF=0.86;AVGPOST=0.9989;ERATE=0.0012;EUR_AF=0.56;LDAF=0.6702;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61912715 rs2236195 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.27;AMR_AF=0.55;AN=2;ASN_AF=0.34;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4237;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.96,-0.00,-5.00 +20 61941747 rs4809287 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.83;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9633;ERATE=0.0106;EUR_AF=0.97;LDAF=0.9324;RSQ=0.7794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +20 61950792 rs3746381 C T 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.28;AN=2;ASN_AF=0.40;AVGPOST=0.9877;ERATE=0.0060;EUR_AF=0.20;LDAF=0.2515;RSQ=0.9748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.97 +20 61951489 rs6089881 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.61;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9069;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.05 +20 61952490 rs4809533 A G 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9429;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.07,-0.04 +20 61953365 rs1884821 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9440;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.73,-0.01 +20 61956782 rs2314251 T C 100 PASS AA=t;AC=1;AF=0.56;AFR_AF=0.30;AMR_AF=0.57;AN=2;ASN_AF=0.61;AVGPOST=0.9782;ERATE=0.0097;EUR_AF=0.67;LDAF=0.5545;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61959642 rs2273494 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.16;AMR_AF=0.29;AN=2;ASN_AF=0.40;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.21;LDAF=0.2633;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61980991 rs3827020 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.44;AVGPOST=0.9963;ERATE=0.0022;EUR_AF=0.19;LDAF=0.2496;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 61981104 rs1044397 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.07;AMR_AF=0.50;AN=2;ASN_AF=0.42;AVGPOST=0.9943;ERATE=0.0023;EUR_AF=0.53;LDAF=0.3968;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61981134 rs1044396 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.07;AMR_AF=0.50;AN=2;ASN_AF=0.29;AVGPOST=0.9940;ERATE=0.0004;EUR_AF=0.53;LDAF=0.3607;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 61981536 rs2229960 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.59;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.95;LDAF=0.8795;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.01 +20 61981554 rs2229959 C A 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.39;AMR_AF=0.85;AN=2;ASN_AF=0.88;AVGPOST=0.9957;ERATE=0.0047;EUR_AF=0.89;LDAF=0.7689;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.78,-0.01 +20 61982085 rs1044394 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.59;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8717;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61982124 rs1044393 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.46;AMR_AF=0.86;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.89;LDAF=0.7856;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 61990874 rs6090384 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.59;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8811;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +20 62038277 rs1801475 T G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.63;AVGPOST=0.9939;ERATE=0.0005;EUR_AF=0.65;LDAF=0.5880;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +20 62038378 rs1801471 A T 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.12;AVGPOST=0.9951;ERATE=0.0006;EUR_AF=0.09;LDAF=0.0808;RSQ=0.9748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.10,-0.70,-5.00 +20 62038757 rs3746364 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0752;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 62124459 rs12480745 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.30;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1673;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.92 +20 62172219 rs6122130 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.96;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4108;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62173562 rs56130722 G T 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4110;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62174724 rs4809309 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4108;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62187187 rs3746348 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.59;AMR_AF=0.57;AN=2;ASN_AF=0.93;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6233;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62187439 rs734750 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.62;AMR_AF=0.58;AN=2;ASN_AF=0.93;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6461;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +20 62191321 rs3810477 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.48;AMR_AF=0.61;AN=2;ASN_AF=0.86;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.54;LDAF=0.6227;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62191475 rs3810478 T G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.21;AMR_AF=0.45;AN=2;ASN_AF=0.83;AVGPOST=0.9585;ERATE=0.0129;EUR_AF=0.36;LDAF=0.4633;RSQ=0.9479;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +20 62191937 rs11551685 G A 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1858;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62193414 rs310629 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9953;ERATE=0.0004;EUR_AF=0.81;LDAF=0.8922;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.17,-0.00 +20 62193587 rs3810482 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.27;AMR_AF=0.36;AN=2;ASN_AF=0.24;AVGPOST=0.9909;ERATE=0.0014;EUR_AF=0.24;LDAF=0.2651;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.02,-0.00 +20 62194030 rs3810483 G C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.35;AMR_AF=0.48;AN=2;ASN_AF=0.85;AVGPOST=0.9939;ERATE=0.0005;EUR_AF=0.41;LDAF=0.5248;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +20 62194103 rs3810484 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.38;AMR_AF=0.49;AN=2;ASN_AF=0.85;AVGPOST=0.9725;ERATE=0.0058;EUR_AF=0.43;LDAF=0.5388;RSQ=0.9631;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-3.58,-0.51,-0.16 +20 62194128 rs3810485 G A 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.24;AMR_AF=0.36;AN=2;ASN_AF=0.24;AVGPOST=0.9922;ERATE=0.0004;EUR_AF=0.24;LDAF=0.2628;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +20 62196807 rs310632 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.94;LDAF=0.9685;RSQ=0.9574;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +20 62196884 rs310633 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9580;RSQ=0.9777;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62198236 rs415304 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.39;AMR_AF=0.66;AN=2;ASN_AF=0.38;AVGPOST=0.9949;ERATE=0.0021;EUR_AF=0.60;LDAF=0.5055;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62198348 rs438363 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.90;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.87;LDAF=0.9154;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62198662 rs367440 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.90;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.87;LDAF=0.9152;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +20 62200575 rs1741594 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.90;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=0.9901;ERATE=0.0004;EUR_AF=0.85;LDAF=0.8926;RSQ=0.9663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62200860 rs1757752 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.47;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7638;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.86,-0.01 +20 62202240 rs402211 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9977;ERATE=0.0011;EUR_AF=0.90;LDAF=0.9500;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.82,-0.00 +20 62221610 rs311496 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.63;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8295;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62223371 rs311494 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.88;LDAF=0.9262;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62227081 rs311489 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.63;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8295;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62229072 rs2297429 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.25;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1673;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62305274 rs2297437 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.40;AMR_AF=0.33;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2482;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62309554 rs41309367 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5952;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62319464 rs2738785 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.27;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6885;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62319604 rs2777941 A C 100 PASS AA=a;AC=2;AF=0.69;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=0.28;AVGPOST=0.9990;ERATE=0.0011;EUR_AF=0.78;LDAF=0.6904;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62320968 rs6062302 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6906;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62321655 rs2236506 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6736;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +20 62322288 rs3208007 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.27;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.78;LDAF=0.6872;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.59,-0.01 +20 62324289 rs3848672 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.32;AN=2;ASN_AF=0.55;AVGPOST=0.9938;ERATE=0.0311;EUR_AF=0.15;LDAF=0.2562;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +20 62326110 rs3208008 A C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.97;AMR_AF=0.80;AN=2;ASN_AF=0.35;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.78;LDAF=0.7156;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +20 62326579 rs41309931 G T 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1450;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62328375 rs2738787 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9588;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.10,-0.00 +20 62340115 rs1291212 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9595;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62369161 rs2236511 C G 100 PASS AA=c;AC=2;AF=0.15;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.23;AVGPOST=0.9718;ERATE=0.0012;EUR_AF=0.11;LDAF=0.1537;RSQ=0.9182;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.15,-0.48,-0.18 +20 62369300 rs914559 C G 100 PASS AA=c;AC=2;AF=0.72;AFR_AF=0.96;AMR_AF=0.81;AN=2;ASN_AF=0.37;AVGPOST=0.9898;ERATE=0.0018;EUR_AF=0.79;LDAF=0.7219;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +20 62369895 rs1151624 A G 100 PASS AA=g;AC=2;AF=0.73;AFR_AF=0.97;AMR_AF=0.81;AN=2;ASN_AF=0.38;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7296;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.09,-0.04 +20 62372706 rs4809221 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.37;AVGPOST=0.9974;ERATE=0.0029;EUR_AF=0.71;LDAF=0.6238;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62372813 rs2427536 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9593;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62373707 rs8957 G T 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=0.37;AVGPOST=0.9976;ERATE=0.0009;EUR_AF=0.74;LDAF=0.6973;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +20 62374219 rs1151626 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9951;ERATE=0.0010;EUR_AF=0.92;LDAF=0.9591;RSQ=0.9557;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +20 62378349 rs5019252 C T 100 PASS AA=c;AC=2;AF=0.31;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.34;AVGPOST=0.9910;ERATE=0.0021;EUR_AF=0.34;LDAF=0.3076;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.13,-0.00 +20 62378364 rs12625387 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.16;AMR_AF=0.38;AN=2;ASN_AF=0.34;AVGPOST=0.9930;ERATE=0.0034;EUR_AF=0.35;LDAF=0.3112;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.53,-0.01 +20 62560701 rs113987077 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0330;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 62594009 rs200049445 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.7608;SNPSOURCE=EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +20 62714783 rs6010717 C G 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.69;AVGPOST=0.9973;ERATE=0.0018;EUR_AF=0.65;LDAF=0.6686;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +20 62715548 rs4431000 C A 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.52;AMR_AF=0.56;AN=2;ASN_AF=0.59;AVGPOST=0.9646;ERATE=0.0016;EUR_AF=0.48;LDAF=0.5334;RSQ=0.9441;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +20 62729431 rs2229205 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.15;AMR_AF=0.09;AN=2;ASN_AF=0.13;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.17;LDAF=0.1427;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 62737318 rs13036542 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.37;AMR_AF=0.54;AN=2;ASN_AF=0.60;AVGPOST=0.9982;ERATE=0.0012;EUR_AF=0.48;LDAF=0.4985;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +20 62830290 rs2295450 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0868;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 62836382 rs2273443 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0846;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 62838933 rs6090069 T C 100 PASS AA=t;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.28;LDAF=0.1769;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +20 62839888 rs59834539 T C 100 PASS AA=t;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.08;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.24;LDAF=0.1723;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +20 62850358 rs41279348 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0842;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 282753 rs1138439 G A 100 PASS AA=.;AC=2;AF=0.37;AFR_AF=0.43;AMR_AF=0.42;AN=2;ASN_AF=0.15;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.48;LDAF=0.3734;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 312143 rs10416918 T C 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.95;AVGPOST=0.9908;ERATE=0.0011;EUR_AF=1.00;LDAF=0.9819;RSQ=0.8152;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.34,-0.02 +19 367089 rs10422863 G A 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.10;AMR_AF=0.04;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0640;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 373897 rs668447 G C 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9939;ERATE=0.0086;EUR_AF=0.24;LDAF=0.1637;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0128;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 374453 rs3815960 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.51;AMR_AF=0.21;AN=2;ASN_AF=0.54;AVGPOST=0.9933;ERATE=0.0384;EUR_AF=0.21;LDAF=0.3657;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0179;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 376008 rs1549697 C T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.58;AMR_AF=0.30;AN=2;ASN_AF=0.16;AVGPOST=0.9782;ERATE=0.0047;EUR_AF=0.29;LDAF=0.3258;RSQ=0.9654;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 438868 rs113879435 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.04;AVGPOST=0.9495;ERATE=0.0027;EUR_AF=0.23;LDAF=0.1330;RSQ=0.8506;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 501725 rs62130833 G A 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.15;AMR_AF=0.37;AN=2;ASN_AF=0.32;AVGPOST=0.9773;ERATE=0.0150;EUR_AF=0.30;LDAF=0.2832;RSQ=0.9437;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-3.12,-0.47,-0.18 +19 504830 rs7246543 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.35;AMR_AF=0.41;AN=2;ASN_AF=0.18;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2848;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 549595 rs1599883 T C 100 PASS AA=N;AC=1;AF=0.95;AFR_AF=0.87;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.97;LDAF=0.9493;RSQ=0.9736;SNPSOURCE=LOWCOV,EXOME;THETA=0.0115;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 549678 rs1599882 A G 100 PASS AA=g;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9949;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 580333 rs11879069 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.31;AMR_AF=0.26;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2959;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 580665 rs4682 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.31;AMR_AF=0.26;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2960;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 580793 rs10416339 A C 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.68;AMR_AF=0.51;AN=2;ASN_AF=0.53;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4764;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 580810 rs10422916 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.90;AMR_AF=0.62;AN=2;ASN_AF=0.67;AVGPOST=0.9775;ERATE=0.0038;EUR_AF=0.40;LDAF=0.6212;RSQ=0.9712;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 580811 rs11879178 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.22;AN=2;ASN_AF=0.41;AVGPOST=0.9819;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2561;RSQ=0.9690;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 582468 rs2074962 A G 100 PASS AA=.;AC=1;AF=0.62;AFR_AF=0.86;AMR_AF=0.63;AN=2;ASN_AF=0.72;AVGPOST=0.9791;ERATE=0.0041;EUR_AF=0.40;LDAF=0.6181;RSQ=0.9698;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-2.07,-0.00,-4.10 +19 582505 rs2072309 G A 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.27;AMR_AF=0.26;AN=2;ASN_AF=0.46;AVGPOST=0.9967;ERATE=0.0016;EUR_AF=0.18;LDAF=0.2882;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 603513 rs4919815 C T 100 PASS AA=.;AC=2;AF=0.33;AFR_AF=0.32;AMR_AF=0.26;AN=2;ASN_AF=0.38;AVGPOST=0.9870;ERATE=0.0005;EUR_AF=0.32;LDAF=0.3275;RSQ=0.9777;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +19 605171 rs12981860 T C 100 PASS AA=.;AC=1;AF=0.64;AFR_AF=0.63;AMR_AF=0.57;AN=2;ASN_AF=0.76;AVGPOST=0.9909;ERATE=0.0109;EUR_AF=0.59;LDAF=0.6371;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 613307 rs2301778 C T 100 PASS AA=.;AC=2;AF=0.28;AFR_AF=0.27;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9953;ERATE=0.0022;EUR_AF=0.32;LDAF=0.2802;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +19 613898 rs1054786 T C 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.95;AMR_AF=0.73;AN=2;ASN_AF=0.89;AVGPOST=0.9678;ERATE=0.0012;EUR_AF=0.56;LDAF=0.7605;RSQ=0.9401;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.60,-0.01 +19 619021 rs14155 G C 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.72;AMR_AF=0.45;AN=2;ASN_AF=0.55;AVGPOST=0.9981;ERATE=0.0010;EUR_AF=0.51;LDAF=0.5562;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 619574 rs10853990 T G 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.58;AMR_AF=0.42;AN=2;ASN_AF=0.54;AVGPOST=0.9915;ERATE=0.0027;EUR_AF=0.50;LDAF=0.5131;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 619772 rs11669381 G C 100 PASS AA=.;AC=1;AF=0.52;AFR_AF=0.59;AMR_AF=0.42;AN=2;ASN_AF=0.55;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.51;LDAF=0.5189;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 619913 rs2074548 T C 100 PASS AA=.;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.16;AN=2;ASN_AF=0.23;AVGPOST=0.9957;ERATE=0.0006;EUR_AF=0.22;LDAF=0.1766;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-3.85,-0.00,-5.00 +19 621020 rs111437074 T C 100 PASS AA=.;AC=1;AF=0.61;AFR_AF=0.87;AMR_AF=0.44;AN=2;ASN_AF=0.64;AVGPOST=0.9769;ERATE=0.0017;EUR_AF=0.51;LDAF=0.6136;RSQ=0.9640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.18 +19 621712 rs2238547 A G 100 PASS AA=.;AC=1;AF=0.54;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9723;ERATE=0.0072;EUR_AF=0.49;LDAF=0.5375;RSQ=0.9602;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.28,-0.29,-0.32 +19 622336 rs2238549 T G 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5518;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.66,-0.11 +19 624683 rs2285853 A G 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.73;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5537;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 625081 rs2285855 G C 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.73;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5536;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 625198 rs1056766 A G 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.85;AMR_AF=0.42;AN=2;ASN_AF=0.51;AVGPOST=0.9729;ERATE=0.0236;EUR_AF=0.48;LDAF=0.5532;RSQ=0.9663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 632915 rs12610885 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.24;AVGPOST=0.9955;ERATE=0.0007;EUR_AF=0.13;LDAF=0.1376;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-2.31,-0.01,-2.06 +19 633381 rs11669858 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.78;AMR_AF=0.43;AN=2;ASN_AF=0.61;AVGPOST=0.9877;ERATE=0.0016;EUR_AF=0.51;LDAF=0.5840;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.32,-0.01,-1.73 +19 643402 rs200852866 G A 100 PASS AA=g;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9984;ERATE=0.0005;LDAF=0.0013;RSQ=0.4170;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.53 +19 652206 rs8102953 G A 100 PASS AA=a;AC=2;AF=0.98;AFR_AF=0.98;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9950;ERATE=0.0008;EUR_AF=0.97;LDAF=0.9777;RSQ=0.9160;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.89,-0.01 +19 652238 rs11554788 A G 100 PASS AA=a;AC=1;AF=0.30;AFR_AF=0.43;AMR_AF=0.36;AN=2;ASN_AF=0.09;AVGPOST=0.9673;ERATE=0.0318;EUR_AF=0.37;LDAF=0.3082;RSQ=0.9478;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.62 +19 676559 rs62134281 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.24;AVGPOST=0.8818;ERATE=0.0050;EUR_AF=0.48;LDAF=0.3422;RSQ=0.8108;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.100:-0.48,-0.48,-0.48 +19 687142 rs8102982 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9970;RSQ=0.8256;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.88,-0.01 +19 691909 rs4375794 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.66;AMR_AF=0.65;AN=2;ASN_AF=0.60;AVGPOST=0.9956;ERATE=0.0023;EUR_AF=0.79;LDAF=0.6838;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 731055 rs10405821 G C 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.59;AMR_AF=0.51;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5056;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 731077 rs10405836 G C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=0.9749;ERATE=0.0050;EUR_AF=0.35;LDAF=0.4294;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.24,-0.00,-5.00 +19 731078 rs2074355 G T 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=0.9754;ERATE=0.0008;EUR_AF=0.36;LDAF=0.4347;RSQ=0.9687;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.27,-0.00,-5.00 +19 731144 rs1050457 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.66;AMR_AF=0.51;AN=2;ASN_AF=0.53;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5229;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-0.98,-0.05,-5.00 +19 797517 rs10414379 G C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.21;AMR_AF=0.19;AN=2;ASN_AF=0.04;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1484;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.58,-0.51,-0.16 +19 804013 rs351982 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.29;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1033;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 804079 rs351981 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.29;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1033;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 804456 rs351980 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.29;AMR_AF=0.11;AN=2;ASN_AF=0.21;AVGPOST=0.9967;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1788;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.80 +19 806451 rs11549887 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0177;RSQ=0.9289;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.69,-0.10 +19 813220 rs351994 T C 100 PASS AA=t;AC=1;AF=0.25;AFR_AF=0.64;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=0.9670;ERATE=0.0021;EUR_AF=0.17;LDAF=0.2529;RSQ=0.9410;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +19 814907 rs1540615 A G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0348;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 815086 rs351988 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.94;AMR_AF=0.69;AN=2;ASN_AF=0.44;AVGPOST=0.9964;ERATE=0.0012;EUR_AF=0.58;LDAF=0.6406;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 815107 rs113614617 C G 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0330;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 815894 rs113121396 C T 100 PASS AA=c;AC=1;AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0329;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 827891 rs34124897 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0095;RSQ=0.9029;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-1.97,-0.00,-4.40 +19 829723 rs678976 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.89;AMR_AF=0.57;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5877;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 830820 rs28626600 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0567;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 830854 rs595844 T C 100 PASS AA=t;AC=1;AF=0.63;AFR_AF=0.95;AMR_AF=0.61;AN=2;ASN_AF=0.47;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.55;LDAF=0.6256;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 841100 rs62132296 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2042;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 844020 rs351111 G A 100 PASS AA=g;AC=1;AF=0.44;AFR_AF=0.51;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=0.9941;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4420;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.58 +19 844042 rs73492537 G A 100 PASS AA=g;AC=1;AF=0.23;AFR_AF=0.43;AMR_AF=0.29;AN=2;ASN_AF=0.09;AVGPOST=0.9949;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2341;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.92 +19 844077 rs351112 A C 100 PASS AA=c;AC=1;AF=0.59;AFR_AF=0.71;AMR_AF=0.64;AN=2;ASN_AF=0.57;AVGPOST=0.9826;ERATE=0.0011;EUR_AF=0.49;LDAF=0.5868;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.03,-1.18 +19 860852 rs1629038 G C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.36;AMR_AF=0.49;AN=2;ASN_AF=0.32;AVGPOST=0.9638;ERATE=0.0009;EUR_AF=0.58;LDAF=0.4483;RSQ=0.9472;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.04 +19 868115 rs13090 C T 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.46;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=0.9946;ERATE=0.0067;EUR_AF=0.28;LDAF=0.2474;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 871135 rs1683569 A G 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2590;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.30,-0.01,-2.00 +19 880066 rs34799086 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.57;AVGPOST=0.9953;ERATE=0.0006;EUR_AF=0.12;LDAF=0.2620;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +19 885818 rs1060442 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.67;AMR_AF=0.52;AN=2;ASN_AF=0.66;AVGPOST=0.9963;ERATE=0.0100;EUR_AF=0.61;LDAF=0.6235;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 886232 rs139394580 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0167;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.92 +19 897571 rs3746149 G C 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.9931;ERATE=0.0007;EUR_AF=0.39;LDAF=0.3188;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +19 899567 rs2930885 C G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.28;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9864;ERATE=0.0011;EUR_AF=0.35;LDAF=0.3258;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 917526 rs10407968 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9777;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1667;RSQ=0.9405;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.67,-0.10 +19 920642 rs350132 T A 100 PASS AA=N;AC=2;AF=0.77;AFR_AF=0.88;AMR_AF=0.70;AN=2;ASN_AF=0.76;AVGPOST=0.9631;ERATE=0.0013;EUR_AF=0.73;LDAF=0.7619;RSQ=0.9213;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +19 929678 rs3826948 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.14;AMR_AF=0.46;AN=2;ASN_AF=0.67;AVGPOST=0.9508;ERATE=0.0012;EUR_AF=0.61;LDAF=0.4935;RSQ=0.9368;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:1.950:-0.89,-0.39,-0.33 +19 929753 rs1799595 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.91;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=0.9820;ERATE=0.0009;EUR_AF=0.83;LDAF=0.8825;RSQ=0.9367;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +19 960187 rs1637993 G C 100 PASS AA=N;AC=2;AF=0.94;AFR_AF=0.85;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9410;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 965043 rs12608658 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.85;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9433;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 966693 rs6510986 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.66;AMR_AF=0.70;AN=2;ASN_AF=0.54;AVGPOST=0.9950;ERATE=0.0005;EUR_AF=0.86;LDAF=0.7037;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.15 +19 971933 rs1051504 A G 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.61;AMR_AF=0.62;AN=2;ASN_AF=0.48;AVGPOST=0.9953;ERATE=0.0005;EUR_AF=0.75;LDAF=0.6256;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 971949 rs1051505 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9037;ERATE=0.0434;EUR_AF=0.71;LDAF=0.5870;RSQ=0.8007;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 985997 rs2074574 C G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.52;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5543;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 990185 rs10409367 G C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.55;AMR_AF=0.53;AN=2;ASN_AF=0.35;AVGPOST=0.9927;ERATE=0.0011;EUR_AF=0.73;LDAF=0.5580;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 990281 rs2158367 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=1.00;AMR_AF=0.80;AN=2;ASN_AF=0.73;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8776;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +19 990394 rs2240148 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=0.9917;ERATE=0.0013;EUR_AF=0.59;LDAF=0.4563;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-2.12,-0.00,-3.66 +19 990819 rs2240149 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.30;AMR_AF=0.42;AN=2;ASN_AF=0.28;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.59;LDAF=0.4176;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 991968 rs1127043 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.42;AMR_AF=0.30;AN=2;ASN_AF=0.42;AVGPOST=0.9902;ERATE=0.0016;EUR_AF=0.29;LDAF=0.3548;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1003158 rs35163060 C T 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.29;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9943;ERATE=0.0006;EUR_AF=0.06;LDAF=0.1276;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.80,-0.00,-5.00 +19 1003221 rs35592366 C A 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.03;AN=2;ASN_AF=0.12;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.06;LDAF=0.0947;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1003374 rs34585248 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.07;AVGPOST=0.9967;ERATE=0.0006;EUR_AF=0.03;LDAF=0.0346;RSQ=0.9582;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.44 +19 1004687 rs12978900 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0321;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-3.47,-0.00,-5.00 +19 1004710 rs4807399 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.36;AMR_AF=0.42;AN=2;ASN_AF=0.07;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.52;LDAF=0.3522;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1004740 rs2240157 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.79;AMR_AF=0.60;AN=2;ASN_AF=0.48;AVGPOST=0.9957;ERATE=0.0006;EUR_AF=0.71;LDAF=0.6485;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +19 1004844 rs4806909 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.39;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3061;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1005230 rs2240158 C T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.49;AMR_AF=0.29;AN=2;ASN_AF=0.14;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3296;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1005531 rs12973948 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.14;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2382;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1005598 rs11671828 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=0.9964;ERATE=0.0009;EUR_AF=0.39;LDAF=0.2864;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1009585 rs10401454 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.28;AMR_AF=0.29;AN=2;ASN_AF=0.13;AVGPOST=0.9438;ERATE=0.0054;EUR_AF=0.33;LDAF=0.2688;RSQ=0.8945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.050:-0.43,-0.21,-2.17 +19 1010406 rs62131162 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9972;ERATE=0.0005;EUR_AF=0.14;LDAF=0.0972;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.81,-0.26,-0.35 +19 1010673 rs11540362 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.01;AN=2;ASN_AF=0.10;AVGPOST=0.9939;ERATE=0.0008;EUR_AF=0.03;LDAF=0.0394;RSQ=0.9334;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.46 +19 1010691 rs2240159 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.70;AMR_AF=0.50;AN=2;ASN_AF=0.32;AVGPOST=0.9862;ERATE=0.0016;EUR_AF=0.60;LDAF=0.5309;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-3.55,-0.50,-0.16 +19 1010807 rs1058810 G T 100 PASS AA=g;AC=1;AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0358;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.30,-0.01,-1.65 +19 1011338 rs34750262 C T 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.26;AMR_AF=0.13;AN=2;ASN_AF=0.10;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1602;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.95,-0.00 +19 1011823 rs2240161 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.80;AMR_AF=0.57;AN=2;ASN_AF=0.50;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6413;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.04,-0.00 +19 1012120 rs7145 G A 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.15;AMR_AF=0.13;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1357;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +19 1012440 rs11672715 A C 100 PASS AA=C;AC=2;AF=0.19;AFR_AF=0.27;AMR_AF=0.14;AN=2;ASN_AF=0.11;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1877;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.28,-0.02 +19 1012596 rs71335287 G C 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0356;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.94,-0.46,-0.18 +19 1012611 rs970100 A C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.69;AMR_AF=0.50;AN=2;ASN_AF=0.31;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.60;LDAF=0.5293;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-3.05,-0.47,-0.18 +19 1014377 rs1058506 A G 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.27;AMR_AF=0.14;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1871;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1014398 rs7146 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.80;AMR_AF=0.57;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6419;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.90,-0.00 +19 1014486 rs78204382 G A 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0358;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1031212 rs7247087 A G 100 PASS AA=g;AC=1;AF=0.81;AFR_AF=0.73;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8117;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1032369 rs10401325 C T 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.52;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7806;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1032474 rs62131196 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.14;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0777;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1036456 rs1064410 C G 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1322;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1036468 rs1064411 A G 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1322;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1036552 rs2304262 T C 100 PASS AA=c;AC=2;AF=0.85;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8503;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1036575 rs2304260 G A 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1306;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1037584 rs72973561 C T 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1288;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1037932 rs3848639 G C 100 PASS AA=c;AC=2;AF=0.85;AFR_AF=0.76;AMR_AF=0.90;AN=2;ASN_AF=0.87;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.87;LDAF=0.8513;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +19 1043324 rs11672201 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0366;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1044753 rs3764648 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.66;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6890;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1049012 rs4147912 A C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.83;AMR_AF=0.85;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8048;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.15,-0.54 +19 1050874 rs12151021 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.55;AMR_AF=0.78;AN=2;ASN_AF=0.52;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6241;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1051214 rs3752240 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.39;AMR_AF=0.38;AN=2;ASN_AF=0.13;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3058;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1052005 rs3764652 C T 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3856;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1053299 rs3829687 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.56;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4587;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-0.57,-0.14,-5.00 +19 1054060 rs3752243 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.76;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.44;LDAF=0.5078;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1055191 rs3745842 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.38;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3949;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1056065 rs881768 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.50;AMR_AF=0.44;AN=2;ASN_AF=0.38;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4382;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1056492 rs3752246 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.98;AMR_AF=0.85;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8240;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +19 1059004 rs2279796 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.92;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5440;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1064193 rs4147930 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.76;AN=2;ASN_AF=0.49;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6384;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.77,-0.00 +19 1065018 rs4147934 G T 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.59;AMR_AF=0.76;AN=2;ASN_AF=0.48;AVGPOST=0.9788;ERATE=0.0039;EUR_AF=0.71;LDAF=0.6276;RSQ=0.9638;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +19 1065044 rs4147935 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.13;AVGPOST=0.9940;ERATE=0.0009;EUR_AF=0.37;LDAF=0.2346;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.69,-0.10 +19 1065197 rs4147936 G C 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.76;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6369;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +19 1068734 rs3764653 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.48;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4014;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1068738 rs1801284 G A 100 PASS AA=g;AC=1;AF=0.40;AFR_AF=0.48;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4014;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1074000 rs2074442 A T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.93;AMR_AF=0.82;AN=2;ASN_AF=0.69;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7778;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.36,-0.00 +19 1074064 rs12610818 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9922;RSQ=0.9673;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.20,-0.00 +19 1074252 rs11084881 T G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.93;AMR_AF=0.82;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7857;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1077985 rs7251797 A G 100 PASS AA=a;AC=1;AF=0.45;AFR_AF=0.71;AMR_AF=0.42;AN=2;ASN_AF=0.37;AVGPOST=0.9872;ERATE=0.0064;EUR_AF=0.35;LDAF=0.4469;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-0.43,-0.21,-2.16 +19 1080311 rs2074454 G C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.69;AVGPOST=0.9963;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7523;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1081617 rs10404947 A G 100 PASS AA=g;AC=2;AF=0.78;AFR_AF=0.78;AMR_AF=0.87;AN=2;ASN_AF=0.70;AVGPOST=0.9879;ERATE=0.0012;EUR_AF=0.79;LDAF=0.7761;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.78,-0.00 +19 1085966 rs3761028 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.63;AMR_AF=0.65;AN=2;ASN_AF=0.33;AVGPOST=0.9862;ERATE=0.0172;EUR_AF=0.63;LDAF=0.5563;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1086043 rs3761026 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.11;AMR_AF=0.46;AN=2;ASN_AF=0.14;AVGPOST=0.9962;ERATE=0.0033;EUR_AF=0.46;LDAF=0.2981;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 1094004 rs12459404 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9981;ERATE=0.0033;EUR_AF=0.99;LDAF=0.9969;RSQ=0.7665;SNPSOURCE=LOWCOV,EXOME;THETA=0.0108;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1095336 rs1046041 C T 100 PASS AA=c;AC=1;AF=0.61;AFR_AF=0.82;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=0.9635;ERATE=0.0080;EUR_AF=0.50;LDAF=0.6077;RSQ=0.9470;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1095355 rs17554917 C T 100 PASS AA=N;AC=1;AF=0.22;AFR_AF=0.11;AMR_AF=0.25;AN=2;ASN_AF=0.34;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2186;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1106615 rs713041 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.69;AMR_AF=0.64;AN=2;ASN_AF=0.54;AVGPOST=0.9905;ERATE=0.0031;EUR_AF=0.55;LDAF=0.5966;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.47,-0.00,-5.00 +19 1109213 rs2159133 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.75;AMR_AF=0.60;AN=2;ASN_AF=0.46;AVGPOST=0.9903;ERATE=0.0008;EUR_AF=0.50;LDAF=0.5635;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.58,-0.30,-0.64 +19 1110829 rs2302109 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.69;AMR_AF=0.60;AN=2;ASN_AF=0.45;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5475;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1112579 rs62131217 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.21;AN=2;ASN_AF=0.13;AVGPOST=0.9811;ERATE=0.0031;EUR_AF=0.22;LDAF=0.1668;RSQ=0.9448;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.59 +19 1113701 rs2302110 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.06;AMR_AF=0.21;AN=2;ASN_AF=0.13;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1656;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1116935 rs7251039 G A 100 PASS AA=g;AC=1;AF=0.56;AFR_AF=0.73;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=0.9943;ERATE=0.0008;EUR_AF=0.51;LDAF=0.5636;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1119019 rs2074920 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.72;AMR_AF=0.57;AN=2;ASN_AF=0.26;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.46;LDAF=0.4844;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1119963 rs2074921 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.54;AMR_AF=0.55;AN=2;ASN_AF=0.26;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.46;LDAF=0.4424;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.40 +19 1122201 rs62131221 G A 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.0017;AVGPOST=0.9928;ERATE=0.0005;EUR_AF=0.17;LDAF=0.0934;RSQ=0.9664;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.52,-0.01,-1.69 +19 1124053 rs2024093 A G 100 PASS AA=a;AC=1;AF=0.49;AFR_AF=0.72;AMR_AF=0.57;AN=2;ASN_AF=0.26;AVGPOST=0.9975;ERATE=0.0007;EUR_AF=0.47;LDAF=0.4887;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1234788 rs200775133 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.7921;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.10,-0.69 +19 1254122 rs2301761 G A 100 PASS AA=g;AC=1;AF=0.40;AFR_AF=0.17;AMR_AF=0.40;AN=2;ASN_AF=0.53;AVGPOST=0.9747;ERATE=0.0025;EUR_AF=0.44;LDAF=0.3987;RSQ=0.9584;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-2.11,-0.00,-2.51 +19 1256998 rs9823 C T 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.10;AMR_AF=0.34;AN=2;ASN_AF=0.52;AVGPOST=0.9896;ERATE=0.0009;EUR_AF=0.34;LDAF=0.3348;RSQ=0.9832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0152;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1271274 rs12609287 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.97;AVGPOST=0.9993;ERATE=0.0010;EUR_AF=0.79;LDAF=0.7908;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1271529 rs4807050 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.61;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8001;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1272040 rs12488 T C 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.97;AVGPOST=0.9990;ERATE=0.0014;EUR_AF=0.80;LDAF=0.8198;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1357082 rs713042 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7111;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1360575 rs3826942 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6591;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1366422 rs2668418 C G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.76;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6864;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 1370675 rs12608765 C G 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.06;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9974;ERATE=0.0008;EUR_AF=0.50;LDAF=0.3551;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +19 1388538 rs1142530 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.29;AMR_AF=0.48;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4443;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +19 1456819 rs12974962 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9961;ERATE=0.0009;EUR_AF=0.03;LDAF=0.0163;RSQ=0.8917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.82,-0.01,-5.00 +19 1467684 rs265273 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9488;ERATE=0.0017;EUR_AF=0.94;LDAF=0.9516;RSQ=0.5600;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-0.89,-0.39,-0.33 +19 1487083 rs4807119 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9798;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1964;RSQ=0.9545;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1487195 rs36123574 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9921;ERATE=0.0011;EUR_AF=0.05;LDAF=0.0251;RSQ=0.8709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1487561 rs62128466 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.43;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9816;ERATE=0.0009;EUR_AF=0.38;LDAF=0.3757;RSQ=0.9712;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.66,-4.70 +19 1488147 rs4807120 C T 100 PASS AA=c;AC=2;AF=0.46;AFR_AF=0.16;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=0.9907;ERATE=0.0085;EUR_AF=0.56;LDAF=0.4606;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1489817 rs12972390 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0152;RSQ=0.9692;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1507270 rs149051157 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0014;RSQ=0.9562;SNPSOURCE=EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1507535 rs791461 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.72;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9956;ERATE=0.0013;EUR_AF=0.55;LDAF=0.5287;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1510661 rs265291 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9625;ERATE=0.0025;EUR_AF=0.91;LDAF=0.9224;RSQ=0.8117;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +19 1611856 rs62130064 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1175;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1615852 rs41275838 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9951;ERATE=0.0019;EUR_AF=0.19;LDAF=0.1342;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1619333 rs1140828 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.17;AMR_AF=0.24;AN=2;ASN_AF=0.28;AVGPOST=0.9673;ERATE=0.0045;EUR_AF=0.27;LDAF=0.2519;RSQ=0.9306;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.06 +19 1619339 rs8140 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.47;AN=2;ASN_AF=0.90;AVGPOST=0.9491;ERATE=0.0124;EUR_AF=0.33;LDAF=0.5968;RSQ=0.9332;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.08 +19 1624007 rs55677929 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.20;LDAF=0.3569;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 1650134 rs1860661 A G 100 PASS AA=g;AC=2;AF=0.68;AFR_AF=0.89;AMR_AF=0.60;AN=2;ASN_AF=0.92;AVGPOST=0.9936;ERATE=0.0004;EUR_AF=0.41;LDAF=0.6777;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +19 1783261 rs2385387 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3062;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.43,-0.00 +19 1784890 rs3764605 A G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.47;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.45;LDAF=0.4066;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +19 1784944 rs3764606 A G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.48;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4069;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +19 1796166 rs8100856 C T 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.32;AN=2;ASN_AF=0.57;AVGPOST=0.9947;ERATE=0.0006;EUR_AF=0.16;LDAF=0.2878;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1806210 rs7252063 A C 100 PASS AA=-;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9986;RSQ=0.2171;SNPSOURCE=LOWCOV,EXOME;THETA=0.0116;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.02,-0.00 +19 1809598 rs9941464 C T 100 PASS AA=c;AC=1;AF=0.34;AFR_AF=0.34;AMR_AF=0.35;AN=2;ASN_AF=0.47;AVGPOST=0.9932;ERATE=0.0012;EUR_AF=0.23;LDAF=0.3353;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1810605 rs716993 T C 100 PASS AA=c;AC=2;AF=0.86;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=0.88;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.82;LDAF=0.8596;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 1811547 rs12609187 A G 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.93;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8420;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1811603 rs7250872 C T 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.50;AMR_AF=0.41;AN=2;ASN_AF=0.39;AVGPOST=0.9920;ERATE=0.0033;EUR_AF=0.32;LDAF=0.3957;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1818459 rs1610106 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.84;AMR_AF=0.80;AN=2;ASN_AF=0.77;AVGPOST=0.9971;ERATE=0.0007;EUR_AF=0.70;LDAF=0.7670;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +19 1819125 rs2396359 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.58;AMR_AF=0.37;AN=2;ASN_AF=0.39;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3671;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1821637 rs4807145 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.84;AMR_AF=0.79;AN=2;ASN_AF=0.77;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.70;LDAF=0.7655;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 1827565 rs10415018 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.40;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=0.9851;ERATE=0.0311;EUR_AF=0.10;LDAF=0.2451;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-3.22,-0.00,-5.00 +19 1854557 rs3746045 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.71;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9926;ERATE=0.0011;EUR_AF=0.21;LDAF=0.4093;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.66,-4.70 +19 1880950 rs4807160 T C 100 PASS AA=-;AC=2;AF=0.63;AFR_AF=0.63;AMR_AF=0.68;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6270;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 1912817 rs35870594 C T 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9955;ERATE=0.0012;EUR_AF=0.06;LDAF=0.1065;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.03,-1.16,-5.00 +19 1912934 rs12984675 T C 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.48;AMR_AF=0.38;AN=2;ASN_AF=0.42;AVGPOST=0.9923;ERATE=0.0026;EUR_AF=0.21;LDAF=0.3535;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1978397 rs2277736 G C 100 PASS AA=.;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0307;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1978833 rs2277737 C T 100 PASS AA=.;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.05;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0310;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 1990825 rs8102506 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.55;AMR_AF=0.13;AN=2;ASN_AF=0.19;AVGPOST=0.9961;ERATE=0.0058;EUR_AF=0.11;LDAF=0.2344;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +19 1997363 rs1610045 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.62;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.34;LDAF=0.4452;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2041032 rs2287003 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.92;AMR_AF=0.69;AN=2;ASN_AF=0.69;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.53;LDAF=0.6820;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 2042886 rs7253052 A G 100 PASS AA=a;AC=2;AF=0.67;AFR_AF=0.90;AMR_AF=0.68;AN=2;ASN_AF=0.67;AVGPOST=0.9860;ERATE=0.0080;EUR_AF=0.52;LDAF=0.6672;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-1.58,-0.01 +19 2073466 rs758145 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.68;AMR_AF=0.41;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4670;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2078176 rs35452475 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0327;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2078409 rs2074893 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.68;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=0.9979;ERATE=0.0027;EUR_AF=0.34;LDAF=0.3815;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2078488 rs2074894 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.67;AMR_AF=0.29;AN=2;ASN_AF=0.21;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3709;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2099362 rs1051767 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.18;AVGPOST=0.9868;ERATE=0.0045;EUR_AF=0.34;LDAF=0.2102;RSQ=0.9704;SNPSOURCE=LOWCOV,EXOME;THETA=0.0277;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2129067 rs142361260 A G 100 PASS AA=a;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=0.9340;ERATE=0.0141;EUR_AF=0.16;LDAF=0.1576;RSQ=0.8088;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:0.950:-0.17,-0.49,-2.86 +19 2249477 rs10407022 G T 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.51;AMR_AF=0.72;AN=2;ASN_AF=0.61;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.80;LDAF=0.6743;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:0.700:-0.56,-0.14,-5.00 +19 2251817 rs10417628 T C 100 PASS AA=N;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9948;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9916;RSQ=0.7388;SNPSOURCE=LOWCOV,EXOME;THETA=0.0238;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.70,-0.00 +19 2253590 rs3746158 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.43;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9524;ERATE=0.0022;EUR_AF=0.71;LDAF=0.5908;RSQ=0.9249;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.900:-0.19,-0.45,-2.38 +19 2255336 rs886363 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9934;ERATE=0.0006;EUR_AF=0.83;LDAF=0.8937;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2290499 rs7258841 C T 100 PASS AA=c;AC=1;AF=0.27;AFR_AF=0.40;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=0.9744;ERATE=0.0011;EUR_AF=0.13;LDAF=0.2677;RSQ=0.9525;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.30,-0.30,-2.69 +19 2321854 rs886881 C G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.78;AMR_AF=0.36;AN=2;ASN_AF=0.71;AVGPOST=0.9921;ERATE=0.0032;EUR_AF=0.27;LDAF=0.5126;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.700:-5.00,-0.95,-0.05 +19 2389872 rs891174 G C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.67;AMR_AF=0.50;AN=2;ASN_AF=0.44;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5780;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2389954 rs891175 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.67;AMR_AF=0.50;AN=2;ASN_AF=0.44;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5790;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2389958 rs891176 T A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.67;AMR_AF=0.50;AN=2;ASN_AF=0.44;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5790;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2396556 rs7252886 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.53;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.24;LDAF=0.4103;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.33,-0.28 +19 2396611 rs17685098 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.41;AMR_AF=0.40;AN=2;ASN_AF=0.53;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3814;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2408486 rs62120712 T C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1407;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2408495 rs62120713 T G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9963;ERATE=0.0016;EUR_AF=0.04;LDAF=0.1396;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2408530 rs62120714 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1412;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2410332 rs3848635 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.57;AMR_AF=0.30;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3748;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2413961 rs10153475 G C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.57;AMR_AF=0.31;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3835;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2415801 rs61732208 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.19;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.05;LDAF=0.1465;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2418031 rs11084939 C T 100 PASS AA=c;AC=1;AF=0.16;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.04;LDAF=0.1632;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2422177 rs735911 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2425196 rs7247162 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.14;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9936;ERATE=0.0008;EUR_AF=0.04;LDAF=0.1338;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-2.40,-0.00,-3.70 +19 2427266 rs968688 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1298;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2432555 rs736705 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.53;AMR_AF=0.31;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0017;EUR_AF=0.31;LDAF=0.4008;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2433890 rs11084940 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.84;AMR_AF=0.62;AN=2;ASN_AF=0.67;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6269;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2434245 rs12462450 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.54;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3902;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2434551 rs2304241 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.54;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3901;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2444363 rs11668494 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.54;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3931;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2476388 rs140611154 A G 100 PASS AA=A;AC=1;AF=0.0032;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0033;RSQ=0.9635;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2477277 rs2024144 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.40;AVGPOST=0.9904;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2040;RSQ=0.9781;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.40 +19 2717256 rs3745812 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.56;AVGPOST=0.9983;ERATE=0.0007;EUR_AF=0.15;LDAF=0.2380;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2732747 rs199727394 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.7417;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +19 2732986 rs759073 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.87;AMR_AF=0.38;AN=2;ASN_AF=0.67;AVGPOST=0.9617;ERATE=0.0080;EUR_AF=0.42;LDAF=0.5892;RSQ=0.9456;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2833802 rs867168 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2618;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2833864 rs867169 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2889;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2853566 rs10412087 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.74;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8697;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2916048 rs2043335 T A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.95;AMR_AF=0.94;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9040;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 2917186 rs2288959 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.74;AMR_AF=0.89;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8203;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 2917287 rs2288958 C A 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4698;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 2917612 rs10410539 T C 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.70;AMR_AF=0.85;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0020;EUR_AF=0.88;LDAF=0.8000;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 2933480 rs3786948 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.48;AMR_AF=0.80;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.6879;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 2934282 rs3746073 T C 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8377;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 2936623 rs4807371 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.94;AMR_AF=0.92;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8405;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 2944806 rs140057887 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9905;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0170;RSQ=0.7883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:0.950:-2.82,-0.26,-0.35 +19 2989697 rs6510730 T C 100 PASS AA=t;AC=1;AF=0.29;AFR_AF=0.66;AMR_AF=0.25;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2939;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2989810 rs504199 G T 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.70;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=0.9963;ERATE=0.0008;EUR_AF=0.48;LDAF=0.5410;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 2991814 rs428113 T C 100 PASS AA=t;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9835;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 2994903 rs34831575 T C 100 PASS AA=t;AC=2;AF=0.32;AFR_AF=0.38;AMR_AF=0.35;AN=2;ASN_AF=0.36;AVGPOST=0.9971;ERATE=0.0007;EUR_AF=0.25;LDAF=0.3221;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +19 2994921 rs34551565 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.34;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=0.9986;ERATE=0.0019;EUR_AF=0.24;LDAF=0.3024;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +19 2997897 rs11150 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2097;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3014639 rs216273 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.65;AMR_AF=0.30;AN=2;ASN_AF=0.30;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3522;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +19 3028871 rs2288950 G C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.56;AMR_AF=0.46;AN=2;ASN_AF=0.39;AVGPOST=0.9619;ERATE=0.0080;EUR_AF=0.35;LDAF=0.4251;RSQ=0.9388;SNPSOURCE=LOWCOV,EXOME;THETA=0.0097;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 3053802 rs425485 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.73;AMR_AF=0.46;AN=2;ASN_AF=0.33;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.70;LDAF=0.5708;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +19 3054089 rs2302301 C T 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9749;ERATE=0.0079;EUR_AF=0.25;LDAF=0.1913;RSQ=0.9489;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.66,-0.11 +19 3110349 rs11085000 T G 100 PASS AA=.;AC=2;AF=0.39;AFR_AF=0.23;AMR_AF=0.40;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.44;LDAF=0.3874;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +19 3113305 rs1682811 G C 100 PASS AA=.;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.92;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8638;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3119184 rs308046 T G 100 PASS AA=.;AC=2;AF=0.82;AFR_AF=0.72;AMR_AF=0.91;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8197;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3119198 rs116848044 C T 100 PASS AA=.;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3119239 rs4900 C T 100 PASS AA=.;AC=2;AF=0.39;AFR_AF=0.22;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.45;LDAF=0.3888;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3119405 rs370286 T G 100 PASS AA=.;AC=1;AF=0.79;AFR_AF=0.91;AMR_AF=0.82;AN=2;ASN_AF=0.70;AVGPOST=0.9407;ERATE=0.0246;EUR_AF=0.76;LDAF=0.7804;RSQ=0.8680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3148819 rs8113569 G T 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.53;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6150;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 3150238 rs310680 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3151780 rs2230330 G A 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0029;RSQ=0.9626;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3162909 rs1637656 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.23;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1658;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3186085 rs11551095 G T 100 PASS AA=g;AC=1;AF=0.55;AFR_AF=0.64;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.54;LDAF=0.5550;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.54 +19 3198777 rs311621 A G 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.44;AMR_AF=0.46;AN=2;ASN_AF=0.49;AVGPOST=0.9955;ERATE=0.0009;EUR_AF=0.42;LDAF=0.4495;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3204172 rs8106438 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.58;AMR_AF=0.52;AN=2;ASN_AF=0.92;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.49;LDAF=0.6239;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +19 3206235 rs482758 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.59;AMR_AF=0.51;AN=2;ASN_AF=0.94;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.49;LDAF=0.6323;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.04,-0.47,-0.18 +19 3207348 rs312069 G C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.61;AMR_AF=0.55;AN=2;ASN_AF=0.91;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6608;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3285012 rs59656659 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.43;AMR_AF=0.48;AN=2;ASN_AF=0.15;AVGPOST=0.9841;ERATE=0.0020;EUR_AF=0.60;LDAF=0.4189;RSQ=0.9774;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.900:-0.19,-0.46,-2.42 +19 3452683 rs8105687 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.73;AMR_AF=0.60;AN=2;ASN_AF=0.38;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6002;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3527110 rs10420193 G T 100 PASS AA=g;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1070;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 3544971 rs12976454 C T 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.04;AMR_AF=0.44;AN=2;ASN_AF=0.83;AVGPOST=0.9910;ERATE=0.0006;EUR_AF=0.34;LDAF=0.4165;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 3548057 rs6510759 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.88;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=0.9761;ERATE=0.0040;EUR_AF=0.49;LDAF=0.6890;RSQ=0.9600;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +19 3548313 rs2240752 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.89;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=0.9858;ERATE=0.0004;EUR_AF=0.49;LDAF=0.6923;RSQ=0.9771;SNPSOURCE=LOWCOV,EXOME;THETA=0.0091;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.64,-4.40 +19 3586471 rs8100350 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.65;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9986;ERATE=0.0021;EUR_AF=0.27;LDAF=0.3505;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 3595794 rs4523 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.81;AMR_AF=0.55;AN=2;ASN_AF=0.19;AVGPOST=0.9937;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5517;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3600390 rs5745 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0770;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3614403 rs7255692 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.95;LDAF=0.9777;RSQ=0.9239;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.55,-0.01 +19 3624005 rs55862054 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9984;ERATE=0.0007;EUR_AF=0.07;LDAF=0.0366;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3626771 rs17674528 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9860;ERATE=0.0014;EUR_AF=0.07;LDAF=0.0431;RSQ=0.8616;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.33,-0.02,-4.10 +19 3638857 rs55668698 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0371;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3667294 rs114799461 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0453;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3730041 rs7258176 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3731985 rs1879040 G A 100 PASS AA=g;AC=1;AF=0.31;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3085;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 3738649 rs599587 A C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.74;AMR_AF=0.79;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6997;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3738971 rs600986 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.70;AMR_AF=0.78;AN=2;ASN_AF=0.66;AVGPOST=0.9898;ERATE=0.0056;EUR_AF=0.65;LDAF=0.6844;RSQ=0.9796;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3740658 rs10416362 T G 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.51;AMR_AF=0.54;AN=2;ASN_AF=0.59;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.50;LDAF=0.5296;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +19 3746087 rs501168 G A 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.34;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4396;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 3750615 rs1046268 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.28;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5395;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 3750622 rs1046271 A C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.51;AMR_AF=0.69;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5944;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +19 3750690 rs1046278 A C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.42;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5732;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +19 3752874 rs8102086 A G 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.37;AMR_AF=0.68;AN=2;ASN_AF=0.66;AVGPOST=0.9872;ERATE=0.0043;EUR_AF=0.55;LDAF=0.5585;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3753769 rs3746120 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.22;AMR_AF=0.41;AN=2;ASN_AF=0.45;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3611;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +19 3762698 rs13960 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.49;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6059;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 3767265 rs7239 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.46;AMR_AF=0.63;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6197;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 3806162 rs8109765 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.70;AMR_AF=0.55;AN=2;ASN_AF=0.51;AVGPOST=0.9844;ERATE=0.0010;EUR_AF=0.45;LDAF=0.5364;RSQ=0.9748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.68,-0.10 +19 3807276 rs56083710 C G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.18;AMR_AF=0.34;AN=2;ASN_AF=0.15;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.11;LDAF=0.1753;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.92 +19 3831709 rs2240234 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.23;AMR_AF=0.18;AN=2;ASN_AF=0.21;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2056;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3910933 rs4807527 G A 100 PASS AA=g;AC=1;AF=0.65;AFR_AF=0.64;AMR_AF=0.65;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.44;LDAF=0.6503;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3938782 rs12459191 C T 100 PASS AA=C;AC=2;AF=0.23;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2308;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3960020 rs2304193 C T 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.24;AMR_AF=0.15;AN=2;ASN_AF=0.21;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2001;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 3977486 rs36527 A G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.98;AMR_AF=0.84;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8999;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +19 3979408 rs36526 A G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.98;AMR_AF=0.84;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8999;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 3980824 rs36525 A G 100 PASS AA=a;AC=1;AF=0.90;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.80;LDAF=0.8979;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.63 +19 4013322 rs2289865 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.40;AMR_AF=0.24;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2541;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4024020 rs2028827 G A 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.72;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9989;ERATE=0.0039;EUR_AF=0.94;LDAF=0.8939;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0109;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4028783 rs2289863 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.15;AMR_AF=0.77;AN=2;ASN_AF=0.93;AVGPOST=0.9972;ERATE=0.0041;EUR_AF=0.72;LDAF=0.6545;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4033462 rs7255988 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9375;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.18,-0.00 +19 4033614 rs12460140 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.30;AMR_AF=0.80;AN=2;ASN_AF=0.96;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.77;LDAF=0.7188;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.77,-0.26,-0.35 +19 4037322 rs75488612 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.09;AVGPOST=0.9833;ERATE=0.0063;EUR_AF=0.09;LDAF=0.0753;RSQ=0.9011;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.62 +19 4037525 rs2305106 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.06;AMR_AF=0.54;AN=2;ASN_AF=0.72;AVGPOST=0.9676;ERATE=0.0021;EUR_AF=0.60;LDAF=0.4983;RSQ=0.9601;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4090572 rs6629 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=0.9942;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1379;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-2.85 +19 4099187 rs350911 T C 100 PASS AA=c;AC=2;AF=0.80;AFR_AF=0.72;AMR_AF=0.84;AN=2;ASN_AF=0.94;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.72;LDAF=0.7963;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +19 4171972 rs352117 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.18;AN=2;ASN_AF=0.28;AVGPOST=0.9927;ERATE=0.0007;EUR_AF=0.06;LDAF=0.1363;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.06 +19 4174950 rs350845 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=0.68;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8227;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.83,-0.00 +19 4177051 rs350844 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8236;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 4180836 rs352493 C T 100 PASS AA=T;AC=1;AF=0.86;AFR_AF=0.93;AMR_AF=0.82;AN=2;ASN_AF=0.73;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.93;LDAF=0.8605;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4207940 rs2240669 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1999;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.94 +19 4210356 rs12978469 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.54;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6183;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4216269 rs12459920 G A 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.15;LDAF=0.2136;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:0.950:-0.03,-1.12,-5.00 +19 4216910 rs10413818 G A 100 PASS AA=a;AC=2;AF=0.73;AFR_AF=0.57;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7249;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4217207 rs353693 T G 100 PASS AA=g;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9948;ERATE=0.0005;EUR_AF=0.91;LDAF=0.9575;RSQ=0.9512;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 4217956 rs6510794 A G 100 PASS AA=g;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.37;AN=2;ASN_AF=0.46;AVGPOST=0.9490;ERATE=0.0049;EUR_AF=0.47;LDAF=0.4663;RSQ=0.9172;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.050:-0.35,-0.41,-0.78 +19 4229635 rs400089 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.92;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=0.9814;ERATE=0.0163;EUR_AF=0.51;LDAF=0.6340;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0177;VT=SNP GT:DS:GL 1|0:0.900:-0.37,-0.24,-5.00 +19 4280186 rs10419363 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.39;AVGPOST=0.9963;ERATE=0.0023;EUR_AF=0.35;LDAF=0.3233;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4288205 rs888928 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.68;AMR_AF=0.54;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.38;LDAF=0.4678;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4288220 rs888929 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.67;AMR_AF=0.54;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0013;EUR_AF=0.38;LDAF=0.4619;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4288258 rs200878149 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4288332 rs888930 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.67;AMR_AF=0.54;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4633;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4292597 rs888932 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.79;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.26;LDAF=0.4315;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4294623 rs58237134 C A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.19;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.19;LDAF=0.1713;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4294807 rs78320454 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1043;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4297968 rs6510801 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.70;AMR_AF=0.36;AN=2;ASN_AF=0.55;AVGPOST=0.9994;ERATE=0.0027;EUR_AF=0.35;LDAF=0.4851;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4304774 rs17523436 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.51;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=0.8777;ERATE=0.0144;EUR_AF=0.45;LDAF=0.4644;RSQ=0.8035;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.850:-0.19,-0.46,-2.49 +19 4306311 rs4807578 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.56;AMR_AF=0.63;AN=2;ASN_AF=0.40;AVGPOST=0.9988;ERATE=0.0040;EUR_AF=0.65;LDAF=0.5604;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4310552 rs200331149 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4325327 rs10411394 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.59;AMR_AF=0.48;AN=2;ASN_AF=0.64;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5225;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4325433 rs1138253 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.58;AMR_AF=0.48;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5224;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4332105 rs7258060 A T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.40;AMR_AF=0.31;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3966;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4333666 rs10413905 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.40;AMR_AF=0.30;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3979;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4333711 rs7247504 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.78;AMR_AF=0.58;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.53;LDAF=0.6420;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4352959 rs11882587 A G 100 PASS AA=a;AC=2;AF=0.62;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.74;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.52;LDAF=0.6215;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4355035 rs2041772 A G 100 PASS AA=N;AC=2;AF=0.66;AFR_AF=0.75;AMR_AF=0.68;AN=2;ASN_AF=0.74;AVGPOST=0.9936;ERATE=0.0012;EUR_AF=0.53;LDAF=0.6587;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.89,-0.00 +19 4355054 rs2041773 A G 100 PASS AA=N;AC=2;AF=0.62;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9821;ERATE=0.0037;EUR_AF=0.52;LDAF=0.6171;RSQ=0.9717;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.03,-0.00 +19 4355203 rs2041774 G A 100 PASS AA=N;AC=2;AF=0.62;AFR_AF=0.59;AMR_AF=0.67;AN=2;ASN_AF=0.75;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.53;LDAF=0.6247;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +19 4357555 rs4807583 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9882;RSQ=0.9316;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.59,-0.00 +19 4400314 rs62129356 C T 100 PASS AA=C;AC=2;AF=0.15;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.06;AVGPOST=0.9928;ERATE=0.0008;EUR_AF=0.23;LDAF=0.1502;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.60,-0.01 +19 4409756 rs34148381 A G 100 PASS AA=A;AC=2;AF=0.14;AFR_AF=0.06;AMR_AF=0.26;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1422;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4423419 rs11668886 C T 100 PASS AA=C;AC=2;AF=0.12;AFR_AF=0.01;AMR_AF=0.26;AN=2;ASN_AF=0.0035;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1256;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4442999 rs243383 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9751;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +19 4454083 rs1127888 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.10;AMR_AF=0.29;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1746;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4508945 rs8105775 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9976;RSQ=0.5102;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 4510560 rs7251858 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.25;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3641;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4511140 rs7255715 C G 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.64;AMR_AF=0.54;AN=2;ASN_AF=0.66;AVGPOST=0.9867;ERATE=0.0012;EUR_AF=0.55;LDAF=0.5964;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4511278 rs10422078 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.33;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=0.9574;ERATE=0.0266;EUR_AF=0.48;LDAF=0.4545;RSQ=0.9265;SNPSOURCE=EXOME;THETA=0.0172;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4511350 rs7259721 T A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.66;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9599;ERATE=0.0316;EUR_AF=0.69;LDAF=0.6936;RSQ=0.8812;SNPSOURCE=EXOME;THETA=0.0083;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4511453 rs7255187 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=0.9888;ERATE=0.0048;EUR_AF=0.86;LDAF=0.8967;RSQ=0.9562;SNPSOURCE=LOWCOV,EXOME;THETA=0.0199;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 4511525 rs7256712 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=0.9931;ERATE=0.0017;EUR_AF=0.87;LDAF=0.9218;RSQ=0.9631;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4511647 rs7256387 C G 100 PASS AA=g;AC=2;AF=0.83;AFR_AF=0.62;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9671;ERATE=0.0170;EUR_AF=0.84;LDAF=0.8175;RSQ=0.9085;SNPSOURCE=LOWCOV,EXOME;THETA=0.0107;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.59,-0.00 +19 4511830 rs7257142 A G 100 PASS AA=a;AC=1;AF=0.46;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9742;ERATE=0.0947;EUR_AF=0.46;LDAF=0.4622;RSQ=0.8302;SNPSOURCE=EXOME;THETA=0.0082;VT=SNP GT:DS:GL 0|1:1.000:-3.19,-0.00,-5.00 +19 4511927 rs10422025 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.58;AVGPOST=0.9407;ERATE=0.0268;EUR_AF=0.40;LDAF=0.4155;RSQ=0.9110;SNPSOURCE=EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4511955 rs7260518 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=0.93;AVGPOST=0.9892;ERATE=0.0028;EUR_AF=0.87;LDAF=0.9036;RSQ=0.9518;SNPSOURCE=LOWCOV,EXOME;THETA=0.0109;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4512669 rs55901236 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.15;AMR_AF=0.51;AN=2;ASN_AF=0.71;AVGPOST=0.9541;ERATE=0.0247;EUR_AF=0.57;LDAF=0.5060;RSQ=0.9479;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4513559 rs4807597 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=0.9943;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9727;RSQ=0.9167;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.16,-0.00 +19 4524016 rs1062223 G A 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.03;AVGPOST=0.9481;ERATE=0.0017;EUR_AF=0.19;LDAF=0.1233;RSQ=0.8254;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.350:-5.00,-0.69,-0.10 +19 4525046 rs1610090 A G 100 PASS AA=.;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=0.67;AVGPOST=0.9310;ERATE=0.0023;EUR_AF=0.86;LDAF=0.8357;RSQ=0.8261;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +19 4538599 rs966384 G A 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.08;AMR_AF=0.46;AN=2;ASN_AF=0.51;AVGPOST=0.9931;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3524;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4548015 rs4807602 G A 100 PASS AA=.;AC=1;AF=0.64;AFR_AF=0.57;AMR_AF=0.57;AN=2;ASN_AF=0.89;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.53;LDAF=0.6372;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4548245 rs10853972 C A 100 PASS AA=.;AC=1;AF=0.54;AFR_AF=0.21;AMR_AF=0.54;AN=2;ASN_AF=0.89;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5385;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 4552673 rs45579944 C T 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.25;AMR_AF=0.08;AN=2;ASN_AF=0.14;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.05;LDAF=0.1232;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4557056 rs10422881 A C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.93;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.75;LDAF=0.8177;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 4558431 rs2304213 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.40;AMR_AF=0.47;AN=2;ASN_AF=0.59;AVGPOST=0.9859;ERATE=0.0011;EUR_AF=0.47;LDAF=0.4849;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.10,-0.70,-5.00 +19 4684642 rs8105807 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.74;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=0.9981;ERATE=0.0007;EUR_AF=0.32;LDAF=0.3891;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4700187 rs2277735 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.72;AMR_AF=0.28;AN=2;ASN_AF=0.27;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.33;LDAF=0.3936;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 4847713 rs9973235 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.90;AVGPOST=0.9947;ERATE=0.0021;EUR_AF=0.88;LDAF=0.8951;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +19 4847874 rs9304915 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.87;AMR_AF=0.93;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8838;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4852106 rs2271058 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.93;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8911;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 4852137 rs1055919 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.45;AMR_AF=0.54;AN=2;ASN_AF=0.47;AVGPOST=0.9993;ERATE=0.0023;EUR_AF=0.47;LDAF=0.4746;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 4852337 rs2271057 A C 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.24;AMR_AF=0.32;AN=2;ASN_AF=0.45;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3175;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5041178 rs2240678 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.97;AMR_AF=0.80;AN=2;ASN_AF=0.77;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.91;LDAF=0.8675;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5047691 rs2620818 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2625;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5110794 rs2613739 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.70;AMR_AF=0.56;AN=2;ASN_AF=0.64;AVGPOST=0.9955;ERATE=0.0009;EUR_AF=0.57;LDAF=0.6164;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +19 5132051 rs2620839 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.74,-0.01 +19 5134096 rs2251561 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.47;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3311;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 5135392 rs2620836 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.1078;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5206775 rs1143700 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.97;AMR_AF=0.76;AN=2;ASN_AF=0.68;AVGPOST=0.9946;ERATE=0.0093;EUR_AF=0.82;LDAF=0.8038;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.850:-5.00,-0.09,-0.75 +19 5208216 rs60630722 G A 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.06;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1351;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5208236 rs55727125 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.39;AMR_AF=0.36;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2558;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5210622 rs2302224 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.41;AMR_AF=0.37;AN=2;ASN_AF=0.07;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.26;LDAF=0.2647;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5210782 rs1143698 G A 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.59;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3163;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5211568 rs55858361 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3565;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 5212380 rs1064300 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.46;AMR_AF=0.41;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3081;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +19 5212482 rs2230611 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.11;AMR_AF=0.29;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1353;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +19 5214533 rs9304921 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.97;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7664;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 5214697 rs4807697 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5215474 rs73919781 G A 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1295;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5222088 rs3746131 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=0.9984;ERATE=0.0018;EUR_AF=0.08;LDAF=0.0920;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5260878 rs36016542 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.78;AVGPOST=0.9950;ERATE=0.0011;EUR_AF=0.65;LDAF=0.6751;RSQ=0.9909;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5265222 rs4807703 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.21;AMR_AF=0.57;AN=2;ASN_AF=0.77;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4975;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5274384 rs1034917 C T 100 PASS AA=t;AC=2;AF=0.15;AFR_AF=0.17;AMR_AF=0.27;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1499;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +19 5455611 rs2240743 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.34;AMR_AF=0.55;AN=2;ASN_AF=0.78;AVGPOST=0.9937;ERATE=0.0014;EUR_AF=0.53;LDAF=0.5571;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5455796 rs420325 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.89;AMR_AF=0.64;AN=2;ASN_AF=0.88;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.58;LDAF=0.7344;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5455971 rs8103406 G T 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.78;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5602;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5455976 rs61740902 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9940;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1211;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5455978 rs8107825 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.39;AMR_AF=0.56;AN=2;ASN_AF=0.78;AVGPOST=0.9939;ERATE=0.0005;EUR_AF=0.52;LDAF=0.5639;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5455990 rs17304380 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.36;AVGPOST=0.9928;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2066;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 5456450 rs8111108 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.78;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9930;ERATE=0.0013;EUR_AF=0.58;LDAF=0.7111;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5595354 rs10413286 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.90;AMR_AF=0.73;AN=2;ASN_AF=0.91;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.66;LDAF=0.7935;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5687509 rs181338024 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9959;ERATE=0.0012;EUR_AF=0.0013;LDAF=0.0080;RSQ=0.7945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.87 +19 5707204 rs945828 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.71;AMR_AF=0.88;AN=2;ASN_AF=0.81;AVGPOST=0.9971;ERATE=0.0017;EUR_AF=0.79;LDAF=0.7945;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +19 5733874 rs73544757 T C 100 PASS AA=t;AC=1;AF=0.04;AFR_AF=0.12;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0375;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 5733908 rs73544759 G C 100 PASS AA=a;AC=1;AF=0.04;AFR_AF=0.13;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0393;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 5749070 rs58136456 C T 100 PASS AA=c;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.70;AVGPOST=0.9947;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4096;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5766090 rs2446200 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.69;AMR_AF=0.84;AN=2;ASN_AF=0.65;AVGPOST=0.9975;ERATE=0.0013;EUR_AF=0.88;LDAF=0.7737;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5772950 rs61180947 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.01;AMR_AF=0.37;AN=2;ASN_AF=0.43;AVGPOST=0.9875;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2677;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 5785449 rs12977803 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9981;ERATE=0.0019;EUR_AF=0.01;LDAF=0.0079;RSQ=0.9047;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.34 +19 5831672 rs61147939 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.27;AN=2;ASN_AF=0.48;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2105;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.99,-0.05 +19 5831724 rs112313064 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.81;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.39;LDAF=0.5646;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.27,-0.01,-1.68 +19 5832209 rs778805 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.65;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.31;LDAF=0.4826;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 5832589 rs9807877 A C 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.25;AMR_AF=0.36;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3599;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 5844537 rs778986 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8907;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5844649 rs812936 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.91;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8874;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5866585 rs778982 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.82;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=0.9983;ERATE=0.0024;EUR_AF=0.78;LDAF=0.8319;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 5866724 rs4807054 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.22;AMR_AF=0.51;AN=2;ASN_AF=0.58;AVGPOST=0.9826;ERATE=0.0044;EUR_AF=0.35;LDAF=0.4099;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.24,-0.38 +19 5866736 rs57100281 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.84;AMR_AF=0.82;AN=2;ASN_AF=0.88;AVGPOST=0.9548;ERATE=0.0250;EUR_AF=0.72;LDAF=0.7939;RSQ=0.9113;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +19 5866816 rs28541500 G A 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=0.85;AVGPOST=0.9704;ERATE=0.0056;EUR_AF=0.75;LDAF=0.7994;RSQ=0.9321;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-2.99,-0.47,-0.18 +19 5866840 rs702065 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.87;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=0.9767;ERATE=0.0031;EUR_AF=0.62;LDAF=0.7582;RSQ=0.9561;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.050:-2.94,-0.46,-0.18 +19 5867177 rs778970 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.28;AMR_AF=0.56;AN=2;ASN_AF=0.62;AVGPOST=0.9723;ERATE=0.0059;EUR_AF=0.44;LDAF=0.4714;RSQ=0.9595;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:0.950:-0.06,-0.90,-5.00 +19 5867191 rs10412834 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.15;LDAF=0.0909;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.83 +19 5867748 rs778971 G T 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.47;AMR_AF=0.66;AN=2;ASN_AF=0.81;AVGPOST=0.9926;ERATE=0.0084;EUR_AF=0.55;LDAF=0.6150;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +19 5905141 rs10406399 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.61;AMR_AF=0.76;AN=2;ASN_AF=0.74;AVGPOST=0.9961;ERATE=0.0006;EUR_AF=0.63;LDAF=0.6766;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.77,-0.08 +19 5908969 rs10404195 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1084;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 5995582 rs2302222 T C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.08;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.34;LDAF=0.1947;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.17 +19 6002917 rs28421560 A G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.28;AMR_AF=0.25;AN=2;ASN_AF=0.05;AVGPOST=0.9920;ERATE=0.0032;EUR_AF=0.27;LDAF=0.2109;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0083;VT=SNP GT:DS:GL 0|1:1.000:-1.37,-0.02,-5.00 +19 6151703 rs7252466 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.41;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6429;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6156483 rs4807840 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7340;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6230771 rs2233185 T G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.76;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3651;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 6262355 rs2227261 C T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.50;AMR_AF=0.34;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2677;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 6415443 rs1616305 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9785;RSQ=0.9567;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.52,-0.01 +19 6415795 rs8103311 T C 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.59;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=0.9848;ERATE=0.0019;EUR_AF=0.37;LDAF=0.4845;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +19 6417855 rs2258496 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.47;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4489;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +19 6419275 rs2305059 A G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.60;AMR_AF=0.61;AN=2;ASN_AF=0.48;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.38;LDAF=0.4913;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +19 6495736 rs2071347 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.64;AMR_AF=0.70;AN=2;ASN_AF=0.48;AVGPOST=0.9943;ERATE=0.0010;EUR_AF=0.69;LDAF=0.6237;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +19 6535080 rs2234182 T C 100 PASS AA=N;AC=1;AF=0.65;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.76;AVGPOST=0.9927;ERATE=0.0035;EUR_AF=0.62;LDAF=0.6477;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0121;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6665020 rs344560 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=0.94;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9579;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6669934 rs2291668 G A 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2183;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6696342 rs2287848 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.88;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7641;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.02 +19 6696496 rs2287847 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.78;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8195;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6696557 rs2287846 C G 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.79;AMR_AF=0.76;AN=2;ASN_AF=0.85;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.62;LDAF=0.7417;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6696597 rs2287845 G A 100 PASS AA=g;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7265;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6696691 rs2355315 G T 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7264;RSQ=0.9987;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6696699 rs2253756 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7265;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6697406 rs423490 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.78;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6697829 rs366510 G T 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7267;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 6702157 rs428453 C G 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7267;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6702246 rs432823 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7271;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6702598 rs406514 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.77;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8190;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6709848 rs2230204 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.49;AMR_AF=0.37;AN=2;ASN_AF=0.47;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3935;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6714489 rs188192816 A G 100 PASS AA=a;AC=1;AF=0.0032;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0014;LDAF=0.0034;RSQ=0.9551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 6731057 rs2279624 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.80;AMR_AF=0.74;AN=2;ASN_AF=0.66;AVGPOST=0.9946;ERATE=0.0007;EUR_AF=0.80;LDAF=0.7525;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 6731213 rs60463209 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.03;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=0.9993;ERATE=0.0004;LDAF=0.0181;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 6731267 rs57717779 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.03;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=0.9992;ERATE=0.0004;LDAF=0.0186;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 6732205 rs77285514 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.03;AMR_AF=0.01;AN=2;ASN_AF=0.06;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0230;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 6732241 rs344618 C T 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.25;AMR_AF=0.24;AN=2;ASN_AF=0.39;AVGPOST=0.9920;ERATE=0.0007;EUR_AF=0.13;LDAF=0.2444;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6732982 rs2012357 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.40;AMR_AF=0.56;AN=2;ASN_AF=0.77;AVGPOST=0.9890;ERATE=0.0037;EUR_AF=0.41;LDAF=0.5259;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.42 +19 6737435 rs340137 A C 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.12;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0463;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.95,-0.05 +19 6737481 rs340138 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.83;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9939;ERATE=0.0006;EUR_AF=0.88;LDAF=0.9022;RSQ=0.9721;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +19 6737509 rs339401 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=0.88;LDAF=0.9187;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +19 6743634 rs339407 G C 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=0.9821;ERATE=0.0098;EUR_AF=0.53;LDAF=0.5263;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6744762 rs339405 A C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.77;AVGPOST=0.9968;ERATE=0.0014;EUR_AF=0.82;LDAF=0.8097;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6754188 rs2305807 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.50;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.26;LDAF=0.3486;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +19 6754774 rs168129 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6755007 rs2305806 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.48;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9990;ERATE=0.0030;EUR_AF=0.27;LDAF=0.3493;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6825032 rs12979659 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.04;AMR_AF=0.34;AN=2;ASN_AF=0.38;AVGPOST=0.9968;ERATE=0.0009;EUR_AF=0.35;LDAF=0.2864;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6828040 rs164022 G C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.09;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3239;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6832060 rs625828 T A 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.10;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=0.9899;ERATE=0.0017;EUR_AF=0.42;LDAF=0.3040;RSQ=0.9829;SNPSOURCE=LOWCOV,EXOME;THETA=0.0269;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6833777 rs186295 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.88;AMR_AF=0.85;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8171;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6833989 rs308199 G T 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.19;AMR_AF=0.80;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.81;LDAF=0.6424;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6896483 rs330877 G A 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=0.9983;ERATE=0.0007;EUR_AF=0.27;LDAF=0.3338;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6897392 rs330879 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.74;AMR_AF=0.40;AN=2;ASN_AF=0.51;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.26;LDAF=0.4579;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6897464 rs330880 C G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.80;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4725;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6901891 rs897738 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.65;AMR_AF=0.38;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4209;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6903920 rs443658 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.65;AMR_AF=0.38;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4205;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6904137 rs370094 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.65;AMR_AF=0.38;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4205;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6913707 rs466876 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1303;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6913811 rs457857 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.57;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7390;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6913878 rs462913 G T 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.57;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7390;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6919529 rs171674 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.65;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7715;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6919624 rs373533 A C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.57;AMR_AF=0.84;AN=2;ASN_AF=0.83;AVGPOST=0.9991;ERATE=0.0030;EUR_AF=0.78;LDAF=0.7535;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6919753 rs461645 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.57;AMR_AF=0.83;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.78;LDAF=0.7519;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6924672 rs2290634 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.92;AMR_AF=0.46;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6926355 rs4807915 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.60;AMR_AF=0.33;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2788;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6926378 rs2228539 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.62;AMR_AF=0.35;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2900;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 6935113 rs252551 C T 100 PASS AA=t;AC=2;AF=0.72;AFR_AF=0.59;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7165;RSQ=0.9994;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 6937683 rs388711 A G 100 PASS AA=N;AC=2;AF=0.69;AFR_AF=0.57;AMR_AF=0.77;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.71;LDAF=0.6930;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7032902 rs78637972 G A 100 PASS AA=.;AC=2;AF=0.52;AFR_AF=0.54;AMR_AF=0.54;AN=2;ASN_AF=0.51;AVGPOST=0.6980;ERATE=0.0107;EUR_AF=0.51;LDAF=0.5110;RSQ=0.5630;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:1.550:-2.86,-0.46,-0.19 +19 7152703 rs3745548 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.0041;AMR_AF=0.18;AN=2;ASN_AF=0.53;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1755;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 7506668 rs2287909 T G 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.32;LDAF=0.3609;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7506755 rs2287910 A G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.56;AMR_AF=0.43;AN=2;ASN_AF=0.57;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.33;LDAF=0.4603;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7506982 rs10424311 C G 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.54;AMR_AF=0.43;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4565;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7524743 rs11259996 G C 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=0.9981;ERATE=0.0007;EUR_AF=0.48;LDAF=0.5020;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +19 7528734 rs2287918 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.95;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.74;LDAF=0.8124;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +19 7533767 rs10405143 T G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.90;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.72;LDAF=0.7806;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +19 7533850 rs9329368 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.95;AMR_AF=0.72;AN=2;ASN_AF=0.85;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.74;LDAF=0.8133;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.32,-0.02 +19 7570978 rs685034 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.79;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6406;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7571094 rs3826735 G T 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.28;AN=2;ASN_AF=0.16;AVGPOST=0.8388;ERATE=0.0314;EUR_AF=0.42;LDAF=0.3016;RSQ=0.7357;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.700:-0.11,-0.64,-4.40 +19 7584223 rs11555037 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1987;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7593169 rs2305889 A G 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.35;AVGPOST=0.9934;ERATE=0.0034;EUR_AF=0.30;LDAF=0.3085;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7594052 rs28541364 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0128;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7607564 rs620744 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.88;AMR_AF=0.75;AN=2;ASN_AF=0.58;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7079;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 7616347 rs473899 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.43;AMR_AF=0.61;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5269;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7619199 rs534464 C G 100 PASS AA=c;AC=2;AF=0.74;AFR_AF=0.70;AMR_AF=0.86;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7358;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7619647 rs599328 G C 100 PASS AA=g;AC=2;AF=0.75;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=0.58;AVGPOST=0.9777;ERATE=0.0020;EUR_AF=0.76;LDAF=0.7483;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +19 7619648 rs599330 T C 100 PASS AA=c;AC=2;AF=0.71;AFR_AF=0.69;AMR_AF=0.82;AN=2;ASN_AF=0.58;AVGPOST=0.9864;ERATE=0.0005;EUR_AF=0.76;LDAF=0.7095;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.27,-0.02 +19 7621648 rs489056 C T 100 PASS AA=c;AC=2;AF=0.39;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.19;AVGPOST=0.9973;ERATE=0.0066;EUR_AF=0.59;LDAF=0.3951;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7623700 rs535208 G A 100 PASS AA=a;AC=2;AF=0.53;AFR_AF=0.56;AMR_AF=0.65;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5329;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.24,-0.00 +19 7624078 rs538850 C T 100 PASS AA=t;AC=2;AF=0.41;AFR_AF=0.32;AMR_AF=0.54;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4141;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7694393 rs4134809 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.21;AMR_AF=0.24;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2720;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 7698320 rs1862514 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.39;LDAF=0.2609;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +19 7703605 rs8104339 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.46;AMR_AF=0.32;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.42;LDAF=0.4895;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7710040 rs929807 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5326;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.66,-4.70 +19 7710210 rs889187 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.55;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5241;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +19 7711221 rs10001 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5131;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7712193 rs809916 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.19;AMR_AF=0.24;AN=2;ASN_AF=0.11;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2014;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 7712277 rs6791 A G 100 PASS AA=a;AC=2;AF=0.74;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7358;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7712425 rs34976997 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.33;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3269;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7712585 rs794073 T G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.78;AMR_AF=0.65;AN=2;ASN_AF=0.84;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7361;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7735089 rs10402265 G C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.63;AMR_AF=0.89;AN=2;ASN_AF=0.67;AVGPOST=0.9535;ERATE=0.0098;EUR_AF=0.85;LDAF=0.7531;RSQ=0.9130;SNPSOURCE=LOWCOV,EXOME;THETA=0.0400;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.09,-0.00 +19 7747445 rs1053363 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.46;AMR_AF=0.13;AN=2;ASN_AF=0.14;AVGPOST=0.9904;ERATE=0.0007;EUR_AF=0.18;LDAF=0.2250;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7755056 rs2228138 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.62;AMR_AF=0.24;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3620;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7755159 rs4996973 A G 100 PASS AA=N;AC=1;AF=0.36;AFR_AF=0.62;AMR_AF=0.24;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3618;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7755285 rs28364072 A G 100 PASS AA=N;AC=1;AF=0.36;AFR_AF=0.62;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3619;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7755469 rs2277995 T C 100 PASS AA=N;AC=1;AF=0.35;AFR_AF=0.58;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3527;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7755472 rs74927160 G T 100 PASS AA=N;AC=1;AF=0.35;AFR_AF=0.58;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9972;ERATE=0.0018;EUR_AF=0.28;LDAF=0.3511;RSQ=0.9958;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7755485 rs76013233 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.57;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9868;ERATE=0.0092;EUR_AF=0.26;LDAF=0.3347;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-0.16,-0.52,-5.00 +19 7761812 rs2277989 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.85;AMR_AF=0.57;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.49;LDAF=0.5623;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 7763703 rs2287866 A G 100 PASS AA=N;AC=2;AF=0.16;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.22;AVGPOST=0.9946;ERATE=0.0192;EUR_AF=0.05;LDAF=0.1578;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0178;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.26,-0.02 +19 7796497 rs11260026 C G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8862;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.36,-0.00 +19 7831628 rs2277998 G A 100 PASS AA=g;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.30;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.30;LDAF=0.2007;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7831700 rs562607 G C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.89;AMR_AF=0.83;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.85;LDAF=0.7859;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7912816 rs2307003 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.15;AMR_AF=0.49;AN=2;ASN_AF=0.48;AVGPOST=0.9966;ERATE=0.0006;EUR_AF=0.37;LDAF=0.3724;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.74,-0.01 +19 7913974 rs555609 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.57;AMR_AF=0.81;AN=2;ASN_AF=0.63;AVGPOST=0.9990;ERATE=0.0013;EUR_AF=0.76;LDAF=0.6894;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 7916475 rs2452012 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.65;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7792;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7916620 rs580790 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.65;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7784;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7918103 rs526464 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9132;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7927465 rs57122454 G C 100 PASS AA=g;AC=2;AF=0.38;AFR_AF=0.19;AMR_AF=0.48;AN=2;ASN_AF=0.50;AVGPOST=0.9665;ERATE=0.0033;EUR_AF=0.35;LDAF=0.3793;RSQ=0.9485;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-3.13,-0.47,-0.18 +19 7928462 rs10410459 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9996;RSQ=0.0806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-3.62,-0.51,-0.16 +19 7963914 rs524029 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9921;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 7976116 rs10412007 T C 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.77;AMR_AF=0.67;AN=2;ASN_AF=0.55;AVGPOST=0.8951;ERATE=0.1049;EUR_AF=0.59;LDAF=0.6252;RSQ=0.8336;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +19 7986638 rs475002 C G 100 PASS AA=c;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.44;AN=2;ASN_AF=0.50;AVGPOST=0.9966;ERATE=0.0015;EUR_AF=0.54;LDAF=0.4457;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 7986685 rs7250749 G A 100 PASS AA=g;AC=1;AF=0.20;AFR_AF=0.19;AMR_AF=0.39;AN=2;ASN_AF=0.10;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1985;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 7990134 rs112578370 T G 100 PASS AA=t;AC=1;AF=0.29;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=0.8538;ERATE=0.0094;EUR_AF=0.34;LDAF=0.3093;RSQ=0.7472;SNPSOURCE=LOWCOV,EXOME;THETA=0.0127;VT=SNP GT:DS:GL 1|0:1.000:-2.29,-0.01,-1.75 +19 7997676 rs2279528 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2393;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8032432 rs3826740 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2496;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8121360 rs2032887 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.32;AN=2;ASN_AF=0.11;AVGPOST=0.9967;ERATE=0.0008;EUR_AF=0.25;LDAF=0.2215;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8122737 rs2303164 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.59;AMR_AF=0.49;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6284;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8122767 rs2303165 T C 100 PASS AA=C;AC=1;AF=0.92;AFR_AF=1.00;AMR_AF=0.85;AN=2;ASN_AF=0.88;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.93;LDAF=0.9192;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8137102 rs7256904 G T 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.69;AVGPOST=0.9951;ERATE=0.0077;EUR_AF=0.59;LDAF=0.5949;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8146013 rs73005538 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.02;LDAF=0.0113;RSQ=0.9293;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8151239 rs8103000 G C 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.31;AVGPOST=0.9828;ERATE=0.0249;EUR_AF=0.26;LDAF=0.3125;RSQ=0.9632;SNPSOURCE=LOWCOV,EXOME;THETA=0.0125;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8152725 rs12460643 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.92;AMR_AF=0.70;AN=2;ASN_AF=0.47;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6900;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8154984 rs56194853 G A 100 PASS AA=g;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.22;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0715;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8155173 rs12459760 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.24;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1878;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8159362 rs7245429 G T 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4721;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8159409 rs7245552 G T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.41;AMR_AF=0.73;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6723;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8160334 rs12608849 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2879;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8160812 rs10404258 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7016;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +19 8160897 rs12150963 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1518;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8165868 rs56182050 G A 100 PASS AA=g;AC=2;AF=0.30;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2971;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8167639 rs200978594 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8174650 rs3813779 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.26;AMR_AF=0.60;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8176919 rs4804264 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.68;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6627;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8176945 rs4804063 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2577;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8188935 rs4804064 G A 100 PASS AA=g;AC=2;AF=0.35;AFR_AF=0.41;AMR_AF=0.35;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3501;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +19 8191184 rs35025963 C T 100 PASS AA=c;AC=2;AF=0.28;AFR_AF=0.12;AMR_AF=0.33;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.29;LDAF=0.2815;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.78,-0.08 +19 8191238 rs10906993 C T 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9942;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +19 8191248 rs10906994 A G 100 PASS AA=g;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9845;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +19 8191323 rs7260558 T C 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9928;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +19 8196073 rs67775982 G A 100 PASS AA=g;AC=2;AF=0.21;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2089;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 8196222 rs3813777 T C 100 PASS AA=t;AC=2;AF=0.23;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2258;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 8196444 rs4804271 C T 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9896;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8201051 rs8112525 T C 100 PASS AA=c;AC=2;AF=0.88;AFR_AF=0.93;AMR_AF=0.94;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8834;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8201249 rs9749144 C A 100 PASS AA=c;AC=2;AF=0.29;AFR_AF=0.23;AMR_AF=0.29;AN=2;ASN_AF=0.44;AVGPOST=0.9973;ERATE=0.0011;EUR_AF=0.21;LDAF=0.2878;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8203328 rs7246376 G A 100 PASS AA=g;AC=2;AF=0.29;AFR_AF=0.26;AMR_AF=0.27;AN=2;ASN_AF=0.45;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2906;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.14,-0.00 +19 8206553 rs73922237 T C 100 PASS AA=t;AC=1;AF=0.32;AFR_AF=0.40;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3219;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8206748 rs12162233 G A 100 PASS AA=a;AC=1;AF=0.53;AFR_AF=0.69;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5308;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8207070 rs12162237 G A 100 PASS AA=a;AC=1;AF=0.53;AFR_AF=0.69;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5308;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8321182 rs28334 A T 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2491;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8321937 rs1127912 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.33;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9992;ERATE=0.0015;EUR_AF=0.22;LDAF=0.2410;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8321946 rs36247 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.45;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3938;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8321969 rs36248 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2244;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8326866 rs17160348 C T 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.17;LDAF=0.1449;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8326904 rs36259 G A 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.64;AMR_AF=0.76;AN=2;ASN_AF=0.84;AVGPOST=0.9972;ERATE=0.0017;EUR_AF=0.76;LDAF=0.7551;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8326944 rs17160349 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1453;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8326999 rs1044547 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=0.9958;ERATE=0.0006;EUR_AF=0.17;LDAF=0.1567;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.17,-0.49,-2.79 +19 8376431 rs561 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.20;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1696;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8386998 rs4147644 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.37;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2866;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 8398714 rs2009733 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.52;AMR_AF=0.45;AN=2;ASN_AF=0.39;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.50;LDAF=0.4642;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.40 +19 8399628 rs710949 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.74;AMR_AF=0.59;AN=2;ASN_AF=0.42;AVGPOST=0.9919;ERATE=0.0011;EUR_AF=0.61;LDAF=0.5855;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-3.62,-0.51,-0.16 +19 8399635 rs890853 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.20;AVGPOST=0.9755;ERATE=0.0018;EUR_AF=0.26;LDAF=0.2352;RSQ=0.9516;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.68,-0.10 +19 8468485 rs2241588 C T 100 PASS AA=C;AC=2;AF=0.23;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.50;AVGPOST=0.9778;ERATE=0.0040;EUR_AF=0.15;LDAF=0.2242;RSQ=0.9557;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.83,-0.07 +19 8495765 rs2303180 G A 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.30;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2948;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +19 8551094 rs2230647 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.57;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.98;LDAF=0.8864;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8553630 rs6992 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.61;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8899;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8642160 rs4542783 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.59;AMR_AF=0.57;AN=2;ASN_AF=0.76;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.46;LDAF=0.5879;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.01,-0.00 +19 8645786 rs7252299 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9993;RSQ=0.6947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +19 8654916 rs3923268 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.54;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.09;LDAF=0.2072;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8662065 rs182837230 G C 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0047;RSQ=0.9827;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 8669873 rs7260282 T C 100 PASS AA=t;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8224;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +19 8669931 rs7255721 G C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.97;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.71;LDAF=0.8525;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +19 8808900 rs10410943 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.81;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7769;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8808942 rs2340550 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.81;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7768;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8841558 rs28324 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.96;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6438;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8953801 rs2969292 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9090;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 8953922 rs2972588 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.84;AMR_AF=0.88;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8917;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 9204307 rs4804097 A G 100 PASS AA=g;AC=2;AF=0.71;AFR_AF=0.66;AMR_AF=0.57;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.67;LDAF=0.7142;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 9213026 rs4804400 T C 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3515;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 9213079 rs4804401 A C 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3515;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 9213132 rs12610094 A G 100 PASS AA=g;AC=1;AF=0.40;AFR_AF=0.21;AMR_AF=0.34;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4045;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 9324863 rs8109935 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.36;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1403;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 9362343 rs2240927 C T 100 PASS AA=N;AC=2;AF=0.50;AFR_AF=0.86;AMR_AF=0.38;AN=2;ASN_AF=0.55;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4985;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 9362443 rs2240928 C T 100 PASS AA=N;AC=2;AF=0.50;AFR_AF=0.86;AMR_AF=0.38;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4987;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +19 9449888 rs77267061 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0592;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 9490814 rs2217652 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.74;AMR_AF=0.61;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5758;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 9492141 rs3826783 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.60;AMR_AF=0.57;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5288;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 9492370 rs2230752 A T 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.59;AMR_AF=0.57;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5284;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 9524185 rs2241356 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.74;AMR_AF=0.60;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5750;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 9964823 rs59948834 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.84;AMR_AF=0.88;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8519;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10071063 rs10406152 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.93;AMR_AF=0.78;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8560;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10077419 rs3745584 C G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.14;AMR_AF=0.34;AN=2;ASN_AF=0.55;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3518;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.62,-0.00,-5.00 +19 10079013 rs3815747 G C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2908;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10079093 rs3815746 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2117;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10081276 rs1895371 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.39;AMR_AF=0.30;AN=2;ASN_AF=0.33;AVGPOST=0.9861;ERATE=0.0008;EUR_AF=0.42;LDAF=0.3695;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.39 +19 10084292 rs2287813 C G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.73;AMR_AF=0.35;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4681;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10084422 rs2287812 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1723;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10084551 rs2287811 T G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.97;AMR_AF=0.51;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6376;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10085054 rs3815745 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1810;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10087200 rs2287810 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.43;AMR_AF=0.32;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3917;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.85 +19 10088271 rs2161468 C G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.37;AMR_AF=0.27;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3579;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.07,-0.80 +19 10089262 rs12610207 G A 100 PASS AA=g;AC=1;AF=0.63;AFR_AF=0.96;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6298;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10089265 rs188093166 C A 100 PASS AA=c;AC=1;AF=0.0018;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9989;ERATE=0.0012;LDAF=0.0017;RSQ=0.7546;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10090634 rs12609337 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0053;EUR_AF=0.24;LDAF=0.2018;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10090649 rs11879687 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9980;ERATE=0.0042;EUR_AF=0.42;LDAF=0.3699;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10100061 rs2287804 C A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.76;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10102567 rs7251453 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.65;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4433;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10102676 rs7252953 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.76;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4702;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10103583 rs2010448 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.65;AMR_AF=0.40;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4408;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10104154 rs2277964 G T 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1441;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10104272 rs2277963 G C 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1244;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10106936 rs1559186 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.62;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0060;EUR_AF=0.31;LDAF=0.4012;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10108714 rs7254800 G A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.37;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0039;EUR_AF=0.41;LDAF=0.3767;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10112346 rs2287803 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.89;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0041;EUR_AF=0.98;LDAF=0.9267;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0151;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10116375 rs2303099 G T 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4616;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10116703 rs11085530 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2152;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10131999 rs1644731 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.63;AMR_AF=0.50;AN=2;ASN_AF=0.59;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.44;LDAF=0.5333;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10132290 rs747574 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.19;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2107;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10218332 rs2305789 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1866;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10222410 rs140237295 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0092;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10224548 rs3745601 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.15;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1790;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10224579 rs201039858 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8803;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10257245 rs2288349 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.24;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2990;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10265248 rs2114724 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.56;AMR_AF=0.47;AN=2;ASN_AF=0.65;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5348;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10265312 rs721186 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9931;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10267077 rs2228611 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.57;AMR_AF=0.47;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5361;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10271034 rs2241531 C G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.27;AMR_AF=0.18;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.07;LDAF=0.2253;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10271141 rs11672909 A C 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1865;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10273372 rs2228612 T C 100 PASS AA=t;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1842;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10334663 rs2116942 T G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.76;AMR_AF=0.51;AN=2;ASN_AF=0.31;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5359;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10362882 rs2358580 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.30;LDAF=0.1625;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.74 +19 10395683 rs5498 A G 100 PASS AA=a;AC=1;AF=0.35;AFR_AF=0.12;AMR_AF=0.51;AN=2;ASN_AF=0.30;AVGPOST=0.9962;ERATE=0.0008;EUR_AF=0.46;LDAF=0.3492;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10402131 rs901886 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.08;AMR_AF=0.54;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.52;LDAF=0.3728;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10402938 rs1056538 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.02;AMR_AF=0.48;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2938;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10403368 rs2228615 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.02;AMR_AF=0.48;AN=2;ASN_AF=0.25;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.41;LDAF=0.2949;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10403947 rs2569702 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.02;AMR_AF=0.48;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.41;LDAF=0.2975;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10404519 rs17852402 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0897;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10441117 rs3181049 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1300;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10444826 rs2278442 G A 100 PASS AA=g;AC=2;AF=0.67;AFR_AF=0.58;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9945;ERATE=0.0148;EUR_AF=0.66;LDAF=0.6724;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10446568 rs2304237 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1754;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.80 +19 10449358 rs7258015 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1750;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10449392 rs2304240 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.96;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8387;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10449665 rs3176768 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1745;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 10464687 rs280497 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.70;AMR_AF=0.48;AN=2;ASN_AF=0.60;AVGPOST=0.9969;ERATE=0.0010;EUR_AF=0.51;LDAF=0.5704;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 10625067 rs6511701 A C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.72;AMR_AF=0.81;AN=2;ASN_AF=0.78;AVGPOST=0.9827;ERATE=0.0005;EUR_AF=0.79;LDAF=0.7755;RSQ=0.9633;SNPSOURCE=LOWCOV,EXOME;THETA=0.0187;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +19 10668452 rs3745255 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.44;AMR_AF=0.80;AN=2;ASN_AF=0.96;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7081;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10670184 rs3826709 C G 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.73;AMR_AF=0.59;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6230;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10671664 rs7259124 T C 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.24;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3757;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10679240 rs1968445 C G 100 PASS AA=N;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9967;ERATE=0.0005;EUR_AF=0.95;LDAF=0.9726;RSQ=0.9481;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +19 10689518 rs73018654 G A 100 PASS AA=g;AC=2;AF=0.35;AFR_AF=0.25;AMR_AF=0.43;AN=2;ASN_AF=0.64;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.17;LDAF=0.3540;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.68,-0.00 +19 10690557 rs10426276 G C 100 PASS AA=N;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9748;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10692000 rs1045361 T C 100 PASS AA=N;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.45;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3639;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10692117 rs2304161 T C 100 PASS AA=t;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.45;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3638;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10692129 rs2304160 G A 100 PASS AA=N;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.45;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3638;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10694239 rs11085739 A G 100 PASS AA=N;AC=2;AF=0.37;AFR_AF=0.24;AMR_AF=0.45;AN=2;ASN_AF=0.67;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3649;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10694244 rs11085740 C T 100 PASS AA=N;AC=2;AF=0.37;AFR_AF=0.24;AMR_AF=0.45;AN=2;ASN_AF=0.67;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3649;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10738639 rs3087969 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7646;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10741907 rs12972963 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7637;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10742170 rs2288904 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.95;AMR_AF=0.81;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7870;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10742287 rs1560711 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.77;LDAF=0.7651;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10742443 rs1560710 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.84;AMR_AF=0.79;AN=2;ASN_AF=0.65;AVGPOST=0.9859;ERATE=0.0036;EUR_AF=0.76;LDAF=0.7477;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10742463 rs1560709 G T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.65;AVGPOST=0.9886;ERATE=0.0024;EUR_AF=0.76;LDAF=0.7567;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10745764 rs2163832 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.93;AMR_AF=0.75;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.62;LDAF=0.7180;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10794630 rs2229383 G T 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.68;AMR_AF=0.73;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6381;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10818092 rs892085 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.62;AMR_AF=0.59;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4872;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 10883126 rs3826803 C G 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.58;AMR_AF=0.62;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5060;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11039724 rs116937805 C G 100 PASS AA=C;AC=2;AF=0.04;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9965;ERATE=0.0004;LDAF=0.0362;RSQ=0.9589;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +19 11215846 rs10423288 T C 100 PASS AA=T;AC=2;AF=0.09;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.12;AVGPOST=0.9981;ERATE=0.0018;EUR_AF=0.02;LDAF=0.0907;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11221454 rs2738442 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11224265 rs5930 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.79;AMR_AF=0.67;AN=2;ASN_AF=0.60;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.59;LDAF=0.6510;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11230881 rs5925 T C 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.17;AMR_AF=0.52;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3326;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11233941 rs5927 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.65;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7870;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11285390 rs440677 G A 100 PASS AA=g;AC=1;AF=0.52;AFR_AF=0.49;AMR_AF=0.58;AN=2;ASN_AF=0.36;AVGPOST=0.9923;ERATE=0.0009;EUR_AF=0.63;LDAF=0.5199;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +19 11303943 rs3745681 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.65;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.38;LDAF=0.4654;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 11313256 rs3745682 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.23;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3487;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 11319491 rs8409 G A 100 PASS AA=g;AC=1;AF=0.48;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.47;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.60;LDAF=0.4788;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11326119 rs2304155 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.43;AMR_AF=0.55;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5340;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11326125 rs2304154 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.26;AMR_AF=0.53;AN=2;ASN_AF=0.50;AVGPOST=0.9982;ERATE=0.0011;EUR_AF=0.62;LDAF=0.4917;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11326629 rs10403991 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11327608 rs4804151 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.62;AMR_AF=0.60;AN=2;ASN_AF=0.56;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6146;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11327626 rs4804152 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.58;AMR_AF=0.59;AN=2;ASN_AF=0.56;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6053;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11332505 rs3826815 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1752;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11332570 rs3810307 T A 100 PASS AA=t;AC=1;AF=0.30;AFR_AF=0.58;AMR_AF=0.25;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.13;LDAF=0.2976;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11333596 rs3810308 T C 100 PASS AA=t;AC=1;AF=0.18;AFR_AF=0.23;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1774;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11346252 rs6511729 A C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.78;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3455;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.89,-0.01,-5.00 +19 11347493 rs737337 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.48;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9953;ERATE=0.0013;EUR_AF=0.07;LDAF=0.2262;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.12,-0.00,-3.70 +19 11358700 rs4804579 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.31;AMR_AF=0.24;AN=2;ASN_AF=0.21;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2167;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11358799 rs12978266 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.13;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.74;LDAF=0.5395;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 11363146 rs8113582 A T 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.22;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.79;LDAF=0.6274;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 11406952 rs374409 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.83;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4150;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11409061 rs377665 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.73;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3922;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11411868 rs420703 C A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.83;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4246;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11508177 rs2291516 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9952;ERATE=0.0005;EUR_AF=0.09;LDAF=0.1909;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 11526759 rs160838 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.66;AMR_AF=0.66;AN=2;ASN_AF=0.66;AVGPOST=0.9861;ERATE=0.0224;EUR_AF=0.62;LDAF=0.6428;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11526765 rs167479 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.17;AMR_AF=0.52;AN=2;ASN_AF=0.46;AVGPOST=0.9885;ERATE=0.0081;EUR_AF=0.45;LDAF=0.4038;RSQ=0.9832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0178;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11529958 rs1549168 C T 100 PASS AA=C;AC=2;AF=0.23;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9743;ERATE=0.0073;EUR_AF=0.32;LDAF=0.2440;RSQ=0.9478;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11541685 rs34095 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.15;AMR_AF=0.46;AN=2;ASN_AF=0.50;AVGPOST=0.9892;ERATE=0.0024;EUR_AF=0.43;LDAF=0.3884;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11541712 rs34094 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=0.91;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9220;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11558240 rs186375 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9936;RSQ=0.9441;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11559696 rs1971206 G A 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0405;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 11708464 rs72997090 G C 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2193;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11727503 rs4545929 T C 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.33;AMR_AF=0.48;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3839;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 11833362 rs144091748 G A 100 PASS AA=g;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0100;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 11833719 rs117129463 G A 100 PASS AA=g;AC=1;AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0352;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 11891003 rs799193 G A 100 PASS AA=a;AC=2;AF=0.88;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8782;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 11943697 rs400106 G A 100 PASS AA=a;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9653;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 12444278 rs45606740 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0537;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 12502457 rs4804669 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.94;AMR_AF=0.69;AN=2;ASN_AF=0.49;AVGPOST=0.9720;ERATE=0.0116;EUR_AF=0.74;LDAF=0.7027;RSQ=0.9588;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 12540971 rs28559848 T A 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.36;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9521;ERATE=0.0022;EUR_AF=0.18;LDAF=0.2107;RSQ=0.9004;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.00 +19 12541214 rs7256321 G T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3452;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 12541532 rs10422063 C A 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.64;AMR_AF=0.73;AN=2;ASN_AF=0.45;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6539;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 12541542 rs34507016 C T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.40;AMR_AF=0.27;AN=2;ASN_AF=0.32;AVGPOST=0.9903;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2997;RSQ=0.9856;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 12541544 rs35055629 A C 100 PASS AA=a;AC=1;AF=0.30;AFR_AF=0.40;AMR_AF=0.27;AN=2;ASN_AF=0.32;AVGPOST=0.9904;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2982;RSQ=0.9858;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 12541547 rs10402252 T G 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.44;AN=2;ASN_AF=0.10;AVGPOST=0.9904;ERATE=0.0014;EUR_AF=0.52;LDAF=0.3278;RSQ=0.9882;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 12541795 rs35699767 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.47;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3453;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 12542355 rs4804183 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3461;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 12542653 rs4239550 T G 100 PASS AA=t;AC=1;AF=0.27;AFR_AF=0.35;AMR_AF=0.27;AN=2;ASN_AF=0.30;AVGPOST=0.9928;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2738;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 12542654 rs28599549 T A 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.30;AVGPOST=0.9940;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2758;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0150;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 12542772 rs1134389 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.18;AMR_AF=0.43;AN=2;ASN_AF=0.10;AVGPOST=0.9904;ERATE=0.0004;EUR_AF=0.50;LDAF=0.3116;RSQ=0.9849;SNPSOURCE=EXOME;THETA=0.0091;VT=SNP GT:DS:GL 1|0:1.000:-0.06,-0.87,-5.00 +19 12542828 rs4804691 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.42;AMR_AF=0.29;AN=2;ASN_AF=0.33;AVGPOST=0.9692;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3205;RSQ=0.9522;SNPSOURCE=EXOME;THETA=0.0115;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.08 +19 12551715 rs11881297 A C 100 PASS AA=a;AC=2;AF=0.65;AFR_AF=0.63;AMR_AF=0.73;AN=2;ASN_AF=0.45;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6518;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 12575894 rs183502634 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 12576049 rs7259240 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3254;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 12576573 rs10404972 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.41;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.48;LDAF=0.2790;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 12760287 rs12984441 A C 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.22;AMR_AF=0.55;AN=2;ASN_AF=0.15;AVGPOST=0.9849;ERATE=0.0044;EUR_AF=0.67;LDAF=0.4071;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +19 12768391 rs73002392 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.22;AMR_AF=0.54;AN=2;ASN_AF=0.14;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.68;LDAF=0.4106;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +19 12774208 rs1054486 G C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.36;AMR_AF=0.23;AN=2;ASN_AF=0.03;AVGPOST=0.9953;ERATE=0.0305;EUR_AF=0.30;LDAF=0.2314;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 12939792 rs1466306 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.60;LDAF=0.7245;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13008607 rs1060218 G T 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.13;AVGPOST=0.9990;ERATE=0.0036;EUR_AF=0.31;LDAF=0.2478;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13010520 rs8012 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.85;AMR_AF=0.67;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.50;LDAF=0.6861;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13015530 rs17706531 A G 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.14;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2455;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13249244 rs8112067 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.50;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.67;LDAF=0.6980;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13255536 rs2304095 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.51;AMR_AF=0.77;AN=2;ASN_AF=0.86;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.67;LDAF=0.6974;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.04,-0.00 +19 13341037 rs16042 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.65;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2895;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13387904 rs16030 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.11;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1621;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13409696 rs16022 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9931;ERATE=0.0005;EUR_AF=0.14;LDAF=0.1140;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 13411482 rs16018 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.45;AMR_AF=0.77;AN=2;ASN_AF=0.99;AVGPOST=0.9975;ERATE=0.0007;EUR_AF=0.71;LDAF=0.7353;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13414594 rs16016 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.28;AVGPOST=0.9923;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1690;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13443770 rs16008 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.75;LDAF=0.8660;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13445144 rs2306348 C T 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.49;AMR_AF=0.76;AN=2;ASN_AF=0.64;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6350;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13445208 rs2248069 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.47;AMR_AF=0.76;AN=2;ASN_AF=0.64;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6297;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 13482623 rs17846942 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.04;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0534;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 13865070 rs378189 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.41;AMR_AF=0.29;AN=2;ASN_AF=0.44;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3712;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13868669 rs6511886 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.31;AMR_AF=0.34;AN=2;ASN_AF=0.55;AVGPOST=0.9971;ERATE=0.0010;EUR_AF=0.32;LDAF=0.3836;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13883099 rs1469071 A G 100 PASS AA=a;AC=1;AF=0.52;AFR_AF=0.56;AMR_AF=0.44;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5209;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13885309 rs1128749 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.43;AMR_AF=0.28;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3359;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13885437 rs1559149 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.43;AMR_AF=0.28;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3375;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13885484 rs10104 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.43;AMR_AF=0.28;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3373;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13915887 rs199644245 A C 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 13940959 rs10403445 G C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.62;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9966;ERATE=0.0053;EUR_AF=0.24;LDAF=0.3181;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14083761 rs2305780 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.71;AMR_AF=0.52;AN=2;ASN_AF=0.43;AVGPOST=0.9307;ERATE=0.0293;EUR_AF=0.46;LDAF=0.5254;RSQ=0.8959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 14139004 rs1982632 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=0.9976;ERATE=0.0009;EUR_AF=0.78;LDAF=0.8539;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 14141480 rs4263049 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.75;AMR_AF=0.23;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.23;LDAF=0.3843;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 14141666 rs78161395 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1682;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 14143151 rs2306191 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.07;AVGPOST=0.9945;ERATE=0.0019;EUR_AF=0.12;LDAF=0.1000;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14161745 rs10404803 T G 100 PASS AA=g;AC=1;AF=0.38;AFR_AF=0.54;AMR_AF=0.35;AN=2;ASN_AF=0.43;AVGPOST=0.9957;ERATE=0.0031;EUR_AF=0.25;LDAF=0.3792;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 14162676 rs2306190 A C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.81;AMR_AF=0.60;AN=2;ASN_AF=0.51;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.42;LDAF=0.5580;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +19 14231243 rs3745464 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1915;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14231325 rs8102267 C G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1915;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14231330 rs8102698 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1864;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14268799 rs2242222 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1015;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14273641 rs3745462 A G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.42;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2075;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14499357 rs2302094 T A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=0.9349;ERATE=0.0394;EUR_AF=0.88;LDAF=0.8662;RSQ=0.7734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.64,-0.11 +19 14499561 rs148390321 G A 100 PASS AA=G;AC=1;AF=0.0027;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0030;RSQ=0.9299;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14508964 rs7508244 T C 100 PASS AA=t;AC=2;AF=0.82;AFR_AF=0.90;AMR_AF=0.80;AN=2;ASN_AF=0.85;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.77;LDAF=0.8247;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 14517594 rs74937637 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.09;LDAF=0.0789;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14561722 rs8107892 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9961;ERATE=0.0007;EUR_AF=0.99;LDAF=0.9950;RSQ=0.6790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.45,-0.02 +19 14574959 rs2230538 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0559;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14575010 rs34819734 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0559;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14578674 rs2287700 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0509;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14578813 rs10416904 T G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.39;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=0.9982;ERATE=0.0022;EUR_AF=0.07;LDAF=0.1670;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14580328 rs2230539 A G 100 PASS AA=a;AC=1;AF=0.16;AFR_AF=0.38;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9984;ERATE=0.0013;EUR_AF=0.06;LDAF=0.1638;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14589378 rs1127307 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=0.9976;ERATE=0.0008;EUR_AF=0.20;LDAF=0.2596;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14589417 rs75802787 A T 100 PASS AA=a;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0672;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14629150 rs3962158 G A 100 PASS AA=N;AC=1;AF=0.28;AFR_AF=0.40;AMR_AF=0.32;AN=2;ASN_AF=0.09;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.33;LDAF=0.2835;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +19 14736316 rs61729083 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1050;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 14752325 rs8102646 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.69;AMR_AF=0.89;AN=2;ASN_AF=0.87;AVGPOST=0.9663;ERATE=0.0297;EUR_AF=0.81;LDAF=0.8051;RSQ=0.9320;SNPSOURCE=LOWCOV,EXOME;THETA=0.0083;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 14769339 rs4606855 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.95;AMR_AF=0.69;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8030;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 14817548 rs6511961 T A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.94;AMR_AF=0.65;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7619;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14829749 rs3764626 C T 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.43;AMR_AF=0.41;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4319;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14875201 rs7253782 G T 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.91;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8969;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 14875388 rs35612307 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2319;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 14877848 rs10418767 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.44;AMR_AF=0.37;AN=2;ASN_AF=0.22;AVGPOST=0.9207;ERATE=0.0102;EUR_AF=0.30;LDAF=0.3104;RSQ=0.9111;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.65,-0.11 +19 14877857 rs10418770 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.53;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=0.9483;ERATE=0.0207;EUR_AF=0.39;LDAF=0.4050;RSQ=0.9464;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.65,-0.11 +19 14910438 rs10415312 C T 100 PASS AA=t;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9964;ERATE=0.0010;EUR_AF=0.89;LDAF=0.9497;RSQ=0.9739;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 14910573 rs10415562 C T 100 PASS AA=t;AC=2;AF=0.81;AFR_AF=0.86;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.75;LDAF=0.8099;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 14938616 rs2190686 T C 100 PASS AA=c;AC=1;AF=0.52;AFR_AF=0.58;AMR_AF=0.41;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5175;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14951889 rs3752194 A G 100 PASS AA=a;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1051;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 14991643 rs10401818 G A 100 PASS AA=g;AC=1;AF=0.30;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.29;AVGPOST=0.9987;ERATE=0.0018;EUR_AF=0.25;LDAF=0.2967;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 14992042 rs10405136 A G 100 PASS AA=g;AC=1;AF=0.50;AFR_AF=0.33;AMR_AF=0.48;AN=2;ASN_AF=0.67;AVGPOST=0.9861;ERATE=0.0058;EUR_AF=0.48;LDAF=0.4961;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.66 +19 15063757 rs2229896 A G 100 PASS AA=-;AC=1;AF=0.27;AFR_AF=0.42;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2687;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15063920 rs112961563 C T 100 PASS AA=-;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0480;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15065169 rs757465 T C 100 PASS AA=c;AC=1;AF=0.73;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.66;LDAF=0.7287;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15072787 rs3827000 A T 100 PASS AA=t;AC=1;AF=0.73;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7290;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15073196 rs74384196 G A 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0484;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15079078 rs73011399 T C 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.32;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2529;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15083555 rs115001292 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0120;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 15083693 rs3746295 C A 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.51;AMR_AF=0.51;AN=2;ASN_AF=0.66;AVGPOST=0.9934;ERATE=0.0007;EUR_AF=0.52;LDAF=0.5520;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 15124474 rs11085935 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.69;AMR_AF=0.45;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5389;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15131261 rs4405675 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.43;AMR_AF=0.55;AN=2;ASN_AF=0.71;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5304;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 15131330 rs35352238 G A 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.08;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3126;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +19 15132574 rs757463 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.80;AMR_AF=0.84;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.86;LDAF=0.8470;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15133762 rs8111625 G C 100 PASS AA=c;AC=2;AF=0.87;AFR_AF=0.96;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8734;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15133787 rs10424547 C A 100 PASS AA=c;AC=2;AF=0.31;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3082;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.06,-0.00 +19 15133926 rs8112667 C A 100 PASS AA=c;AC=2;AF=0.33;AFR_AF=0.21;AMR_AF=0.38;AN=2;ASN_AF=0.52;AVGPOST=0.9954;ERATE=0.0010;EUR_AF=0.24;LDAF=0.3282;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.96,-0.00 +19 15198024 rs59166286 A T 100 PASS AA=a;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1609;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15198263 rs8105277 A G 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15198292 rs8104843 C G 100 PASS AA=N;AC=1;AF=0.67;AFR_AF=0.38;AMR_AF=0.78;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6659;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15198441 rs73008811 G T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1609;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15198507 rs8108721 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.39;AMR_AF=0.78;AN=2;ASN_AF=0.61;AVGPOST=0.9979;ERATE=0.0022;EUR_AF=0.83;LDAF=0.6655;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15198606 rs73008812 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1609;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15198751 rs16980312 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1604;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15198764 rs12975625 T C 100 PASS AA=C;AC=1;AF=0.89;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8871;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15198851 rs16980313 A T 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1609;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15226611 rs2074261 C A 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.67;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6600;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 15227030 rs2074263 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.67;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6600;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 15233581 rs2074265 C A 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.75;AMR_AF=0.42;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5466;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15233631 rs2074266 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.41;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4616;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15273231 rs4809028 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8661;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15273248 rs4809029 A C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8674;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15273381 rs4809030 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8660;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15276143 rs2074618 C T 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8661;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15276919 rs2074619 G A 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8661;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15276923 rs10416777 C T 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8661;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15278057 rs1548555 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8675;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15285052 rs1044006 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.88;LDAF=0.8668;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15289763 rs78907190 G A 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0073;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15292366 rs11669982 C T 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.83;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.83;LDAF=0.7672;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.18,-0.47,-2.41 +19 15292437 rs1043997 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.83;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7677;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.26,-0.01,-1.75 +19 15300069 rs10423702 T C 100 PASS AA=T;AC=1;AF=0.86;AFR_AF=0.92;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8564;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15302844 rs1043994 T C 100 PASS AA=N;AC=1;AF=0.86;AFR_AF=0.92;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9992;ERATE=0.0013;EUR_AF=0.84;LDAF=0.8563;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 15303225 rs3815188 G A 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.40;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.14;LDAF=0.2391;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.74 +19 15490485 rs57295859 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.43;AVGPOST=0.9931;ERATE=0.0007;EUR_AF=0.10;LDAF=0.1755;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.10 +19 15508130 rs7247749 G A 100 PASS AA=g;AC=2;AF=0.85;AFR_AF=0.85;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8481;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15508362 rs2058322 G C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15565646 rs56209154 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.05;AN=2;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0132;RSQ=0.9442;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 15582863 rs34440547 C T 100 PASS AA=C;AC=2;AF=0.23;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.31;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2338;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +19 15586672 rs892145 A T 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.40;AMR_AF=0.32;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3733;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15587185 rs733731 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3610;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15587345 rs3813135 T C 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3620;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15757927 rs1290626 T C 100 PASS AA=.;AC=2;AF=0.75;AFR_AF=0.84;AMR_AF=0.72;AN=2;ASN_AF=0.85;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.63;LDAF=0.7512;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +19 15763721 rs4646904 G A 100 PASS AA=.;AC=2;AF=0.52;AFR_AF=0.61;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5151;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15769253 rs4646513 C A 100 PASS AA=.;AC=2;AF=0.51;AFR_AF=0.61;AMR_AF=0.50;AN=2;ASN_AF=0.64;AVGPOST=0.9979;ERATE=0.0020;EUR_AF=0.36;LDAF=0.5155;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15769270 rs4646514 A C 100 PASS AA=.;AC=2;AF=0.52;AFR_AF=0.63;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5174;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15769379 rs4646515 G C 100 PASS AA=.;AC=2;AF=0.52;AFR_AF=0.65;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5228;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15769529 rs4646518 G T 100 PASS AA=.;AC=2;AF=0.42;AFR_AF=0.47;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=0.9877;ERATE=0.0040;EUR_AF=0.28;LDAF=0.4243;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15769530 rs4646519 C T 100 PASS AA=.;AC=2;AF=0.42;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.56;AVGPOST=0.9884;ERATE=0.0021;EUR_AF=0.28;LDAF=0.4243;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15769625 rs1915390 A G 100 PASS AA=.;AC=2;AF=0.72;AFR_AF=0.76;AMR_AF=0.71;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7221;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15784319 rs56124328 G T 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.82;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9255;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15784386 rs16995378 C T 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.85;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9319;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15789034 rs28416595 C A 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.79;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9191;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15789098 rs609636 A G 100 PASS AA=.;AC=2;AF=0.94;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9383;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15789140 rs609290 A G 100 PASS AA=.;AC=2;AF=0.94;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9383;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15789250 rs35491114 A G 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.79;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9191;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15789257 rs34521056 T C 100 PASS AA=.;AC=2;AF=0.61;AFR_AF=0.66;AMR_AF=0.59;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6089;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15791132 rs2074568 T A 100 PASS AA=.;AC=1;AF=0.18;AFR_AF=0.23;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1751;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 15791180 rs8100667 C T 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9196;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15793235 rs2285888 T C 100 PASS AA=.;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.70;AVGPOST=0.9724;ERATE=0.0145;EUR_AF=0.49;LDAF=0.5691;RSQ=0.9627;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.36,-0.00 +19 15793370 rs28419129 A T 100 PASS AA=.;AC=2;AF=0.22;AFR_AF=0.07;AMR_AF=0.21;AN=2;ASN_AF=0.58;AVGPOST=0.9953;ERATE=0.0018;EUR_AF=0.06;LDAF=0.2225;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.49,-0.00 +19 15795842 rs2018030 C T 100 PASS AA=.;AC=2;AF=0.95;AFR_AF=0.93;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9513;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15807884 rs593818 A G 100 PASS AA=.;AC=2;AF=0.60;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6034;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15839365 rs1806931 C T 100 PASS AA=.;AC=2;AF=0.21;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2075;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15852242 rs2240227 C A 100 PASS AA=.;AC=2;AF=0.21;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2057;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 15905002 rs4808379 T C 100 PASS AA=.;AC=2;AF=0.43;AFR_AF=0.36;AMR_AF=0.37;AN=2;ASN_AF=0.73;AVGPOST=0.9871;ERATE=0.0120;EUR_AF=0.27;LDAF=0.4258;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.06,-0.04 +19 15905431 rs4808381 T C 100 PASS AA=.;AC=2;AF=0.45;AFR_AF=0.32;AMR_AF=0.41;AN=2;ASN_AF=0.78;AVGPOST=0.9926;ERATE=0.0049;EUR_AF=0.30;LDAF=0.4454;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.40,-0.02 +19 15905529 rs62621417 C A 100 PASS AA=.;AC=2;AF=0.28;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.62;AVGPOST=0.9939;ERATE=0.0009;EUR_AF=0.14;LDAF=0.2761;RSQ=0.9905;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-3.10,-0.47,-0.18 +19 15990431 rs2108622 C T 100 PASS AA=c;AC=1;AF=0.22;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2153;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 16024662 rs1064796 G C 100 PASS AA=N;AC=1;AF=0.67;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6668;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 16025176 rs1060463 C T 100 PASS AA=N;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.50;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.60;LDAF=0.5059;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 16034714 rs8104361 A G 100 PASS AA=N;AC=2;AF=0.79;AFR_AF=0.71;AMR_AF=0.78;AN=2;ASN_AF=0.93;AVGPOST=0.9679;ERATE=0.0220;EUR_AF=0.73;LDAF=0.7861;RSQ=0.9366;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16038334 rs2219358 G A 100 PASS AA=N;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5093;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 16040292 rs3765070 A G 100 PASS AA=N;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5087;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 16045141 rs2305801 T C 100 PASS AA=N;AC=2;AF=0.80;AFR_AF=0.60;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7976;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16192898 rs3826722 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.50;AMR_AF=0.41;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5060;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16275515 rs6512086 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.91;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8905;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16275655 rs6512087 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.95;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.77;LDAF=0.8085;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16275772 rs4808461 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.67;AMR_AF=0.80;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8030;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16284288 rs78608985 G T 100 PASS AA=G;AC=2;AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0594;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16301312 rs206231 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.61;AMR_AF=0.76;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6874;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.81,-0.00 +19 16435717 rs8106384 T C 100 PASS AA=t;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9960;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9944;RSQ=0.7126;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.00,-0.00 +19 16435853 rs7248864 C T 100 PASS AA=c;AC=1;AF=0.15;AFR_AF=0.25;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=0.9856;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1536;RSQ=0.9585;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +19 16436262 rs3745318 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.48;AVGPOST=0.9338;ERATE=0.0032;EUR_AF=0.76;LDAF=0.7371;RSQ=0.8775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.93,-0.05 +19 16487905 rs11086030 T C 100 PASS AA=t;AC=2;AF=0.19;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1870;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 16514771 rs873636 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.77;AMR_AF=0.37;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4407;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +19 16591464 rs9305079 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.49;AMR_AF=0.74;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.68;LDAF=0.6426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16593359 rs12459238 C T 100 PASS AA=C;AC=2;AF=0.04;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0420;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16593415 rs8100755 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.52;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6486;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16594967 rs10413787 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.52;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6465;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 16601194 rs3810198 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.52;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6474;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16611978 rs728116 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.62;AMR_AF=0.34;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3465;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16612011 rs728117 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.62;AMR_AF=0.34;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3473;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16612365 rs7251978 G A 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.62;AMR_AF=0.34;AN=2;ASN_AF=0.15;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3470;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16617486 rs74418457 C T 100 PASS AA=T;AC=2;AF=0.03;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0348;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +19 16631322 rs2303119 T C 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.73;AMR_AF=0.37;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3991;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16633950 rs1043481 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.74;AVGPOST=0.9942;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8744;RSQ=0.9776;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16974541 rs12461731 G A 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.0013;LDAF=0.0179;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 16976286 rs773911 A G 100 PASS AA=a;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 16976289 rs2303091 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1659;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 16988456 rs2303090 A G 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.51;AMR_AF=0.63;AN=2;ASN_AF=0.75;AVGPOST=0.9989;ERATE=0.0025;EUR_AF=0.72;LDAF=0.6649;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 16988476 rs2258663 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.82;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7547;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17004049 rs1054533 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.14;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2264;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.27 +19 17008578 rs2608732 G C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.77;AMR_AF=0.60;AN=2;ASN_AF=0.29;AVGPOST=0.9910;ERATE=0.0016;EUR_AF=0.51;LDAF=0.5264;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17017878 rs56408444 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9927;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1999;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17025292 rs706761 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.83;AMR_AF=0.47;AN=2;ASN_AF=0.70;AVGPOST=0.9641;ERATE=0.0248;EUR_AF=0.59;LDAF=0.6474;RSQ=0.9459;SNPSOURCE=LOWCOV,EXOME;THETA=0.0267;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17068621 rs1457090 C G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.52;AMR_AF=0.29;AN=2;ASN_AF=0.08;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2663;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17081790 rs74937996 G A 100 PASS AA=G;AC=1;AF=0.07;AMR_AF=0.05;AN=2;ASN_AF=0.23;AVGPOST=0.9830;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0742;RSQ=0.9180;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17088299 rs1824152 T C 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.84;AMR_AF=0.38;AN=2;ASN_AF=0.53;AVGPOST=0.9675;ERATE=0.0185;EUR_AF=0.35;LDAF=0.5132;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17088319 rs3745335 G T 100 PASS AA=g;AC=1;AF=0.34;AFR_AF=0.50;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9789;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3433;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17091368 rs8103646 T G 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.64;AMR_AF=0.37;AN=2;ASN_AF=0.55;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.36;LDAF=0.4741;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17091533 rs8100517 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.69;AMR_AF=0.37;AN=2;ASN_AF=0.55;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4843;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17100438 rs4447554 T A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.78;AMR_AF=0.49;AN=2;ASN_AF=0.61;AVGPOST=0.9940;ERATE=0.0006;EUR_AF=0.49;LDAF=0.5853;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17100552 rs1973093 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.85;AMR_AF=0.53;AN=2;ASN_AF=0.61;AVGPOST=0.9835;ERATE=0.0065;EUR_AF=0.50;LDAF=0.6068;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17108135 rs3745340 C T 100 PASS AA=c;AC=1;AF=0.37;AFR_AF=0.18;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9968;ERATE=0.0013;EUR_AF=0.40;LDAF=0.3730;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17111297 rs4808551 A G 100 PASS AA=-;AC=1;AF=0.74;AFR_AF=0.76;AMR_AF=0.78;AN=2;ASN_AF=0.62;AVGPOST=0.9643;ERATE=0.0208;EUR_AF=0.80;LDAF=0.7359;RSQ=0.9391;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17160720 rs61735360 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0334;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17160893 rs12460560 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0165;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17160939 . G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17163661 rs2305758 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.24;AMR_AF=0.26;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2139;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17170885 rs1130222 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.47;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4269;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17173487 rs3816550 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.47;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4270;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17273753 rs12980061 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.36;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.32;LDAF=0.3130;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17273893 rs7256689 G T 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.96;AMR_AF=0.75;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7759;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +19 17283303 rs2279008 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2615;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17298724 rs9305088 G C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.77;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.40;LDAF=0.6201;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17298893 rs3826689 G T 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.77;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.40;LDAF=0.6197;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.97,-0.00 +19 17301863 rs962919 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.77;AMR_AF=0.66;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.6169;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17301880 rs4808072 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=0.76;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7441;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17302056 rs962918 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.94;AMR_AF=0.78;AN=2;ASN_AF=0.76;AVGPOST=0.9913;ERATE=0.0013;EUR_AF=0.57;LDAF=0.7354;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +19 17303774 rs1545620 T G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.78;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.40;LDAF=0.6214;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.14,-0.03 +19 17305440 rs1064305 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.78;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.6225;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17306031 rs2279003 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=0.78;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.57;LDAF=0.7469;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.01,-0.04 +19 17311442 rs2305766 C G 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.78;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5585;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 17312992 rs2305765 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.58;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5760;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17313619 rs8101251 C A 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.62;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.40;LDAF=0.5848;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +19 17316782 rs7248508 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.40;LDAF=0.5987;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.82,-0.00 +19 17317955 rs8110964 A G 100 PASS AA=g;AC=2;AF=0.60;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.40;LDAF=0.5991;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +19 17321487 rs12982797 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5990;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.00,-0.05 +19 17321669 rs12463169 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.40;LDAF=0.5989;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +19 17330060 rs414528 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.94;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9814;RSQ=0.9372;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17337025 rs2288544 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.40;AVGPOST=0.9958;ERATE=0.0007;EUR_AF=0.21;LDAF=0.2580;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +19 17337555 rs3745163 C A 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.24;AN=2;ASN_AF=0.39;AVGPOST=0.9947;ERATE=0.0005;EUR_AF=0.21;LDAF=0.2609;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.40 +19 17337871 rs891204 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1893;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17337882 rs891203 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1894;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17338033 rs891202 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.62;AMR_AF=0.46;AN=2;ASN_AF=0.54;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4906;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17339112 rs14129 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1943;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17351535 rs2288539 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.23;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1873;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17362526 rs10469471 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7250;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17366278 rs4430871 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.97;AMR_AF=0.76;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7581;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17392894 rs8100241 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=0.9941;ERATE=0.0010;EUR_AF=0.58;LDAF=0.4332;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.58,-0.13,-4.00 +19 17393015 rs1864116 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.77;AMR_AF=0.60;AN=2;ASN_AF=0.29;AVGPOST=0.9894;ERATE=0.0011;EUR_AF=0.84;LDAF=0.6377;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.68,-0.10 +19 17393504 rs1864113 G C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.29;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.84;LDAF=0.6434;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.10,-0.69,-4.70 +19 17393530 rs8108174 T A 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.44;AN=2;ASN_AF=0.29;AVGPOST=0.9959;ERATE=0.0010;EUR_AF=0.58;LDAF=0.4616;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.06,-0.89,-5.00 +19 17394124 rs2363956 T G 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.48;AMR_AF=0.44;AN=2;ASN_AF=0.28;AVGPOST=0.9906;ERATE=0.0081;EUR_AF=0.57;LDAF=0.4495;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17394504 rs891017 A C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.84;LDAF=0.6438;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17395003 rs11086065 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.84;LDAF=0.6434;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17395055 rs11882562 C G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.29;AVGPOST=0.9903;ERATE=0.0019;EUR_AF=0.83;LDAF=0.6344;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17396549 rs751599 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.6439;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17412366 rs11086066 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2158;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17412399 rs11086067 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2161;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17424932 rs2288463 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.79;AMR_AF=0.52;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5771;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17435884 rs755123 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.84;AMR_AF=0.53;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5899;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17435887 rs56286266 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.10;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2197;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17438642 rs8102944 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.86;AMR_AF=0.53;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5963;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17448961 rs1864112 A C 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.86;AMR_AF=0.53;AN=2;ASN_AF=0.24;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5983;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17450016 rs3810206 T C 100 PASS AA=c;AC=1;AF=0.60;AFR_AF=0.86;AMR_AF=0.53;AN=2;ASN_AF=0.23;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5959;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17450445 rs11669718 G C 100 PASS AA=g;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.25;AN=2;ASN_AF=0.09;AVGPOST=0.9864;ERATE=0.0034;EUR_AF=0.33;LDAF=0.1956;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +19 17450446 rs4808623 G A 100 PASS AA=g;AC=1;AF=0.50;AFR_AF=0.68;AMR_AF=0.47;AN=2;ASN_AF=0.23;AVGPOST=0.9889;ERATE=0.0005;EUR_AF=0.61;LDAF=0.5019;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +19 17451981 rs3745193 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.0041;AMR_AF=0.13;AN=2;ASN_AF=0.35;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1240;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 17463214 rs62128111 C T 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.35;AVGPOST=0.9975;ERATE=0.0024;EUR_AF=0.25;LDAF=0.2515;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17622614 rs11086075 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.35;AVGPOST=0.9926;ERATE=0.0009;EUR_AF=0.46;LDAF=0.3834;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.050:-0.89,-0.39,-0.33 +19 17628587 rs6743 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.82;AMR_AF=0.61;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5881;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17643065 rs12984143 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.80;AMR_AF=0.82;AN=2;ASN_AF=0.46;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.86;LDAF=0.7325;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17648350 rs8107859 T C 100 PASS AA=N;AC=1;AF=0.91;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.72;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9053;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17651370 rs11878663 A G 100 PASS AA=N;AC=1;AF=0.80;AFR_AF=0.96;AMR_AF=0.89;AN=2;ASN_AF=0.50;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.87;LDAF=0.7985;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17664090 rs57969878 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0891;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17670201 rs62119894 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0846;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.13 +19 17881552 rs3746197 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.80;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5698;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17885270 rs2287859 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.85;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5974;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 17885308 rs2287858 G A 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.61;AMR_AF=0.52;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5749;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +19 17885325 rs2287857 A C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.61;AMR_AF=0.52;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5749;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.75,-0.00 +19 17885336 rs2287856 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.91;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8830;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.76,-0.00 +19 17886940 rs2287854 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5702;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17887024 rs2287853 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.91;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17892193 rs2287852 G C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8728;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17892478 rs2042299 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8734;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17892591 rs2042298 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8734;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17919024 rs2240813 A T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.18;AN=2;ASN_AF=0.16;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1266;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17922795 rs36686 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.90;AMR_AF=0.79;AN=2;ASN_AF=0.52;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7467;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 17932138 rs6523 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.64;AVGPOST=0.9876;ERATE=0.0008;EUR_AF=0.65;LDAF=0.6861;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.65,-4.70 +19 17932190 rs1047233 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.38;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=0.9852;ERATE=0.0014;EUR_AF=0.39;LDAF=0.2810;RSQ=0.9759;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-0.11,-0.66,-4.70 +19 17941294 rs2302603 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.44;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9967;ERATE=0.0042;EUR_AF=0.36;LDAF=0.4130;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17942005 rs3212774 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.43;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.35;LDAF=0.4084;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17952185 rs3212733 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.03;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1180;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.07 +19 17952609 rs3212730 T G 100 PASS AA=t;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.18;AVGPOST=0.9909;ERATE=0.0014;EUR_AF=0.26;LDAF=0.2057;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.72 +19 17955001 rs3212713 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.52;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3753;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-1.47,-0.02,-5.00 +19 17955003 rs3212712 C T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.71;AMR_AF=0.39;AN=2;ASN_AF=0.35;AVGPOST=0.9967;ERATE=0.0018;EUR_AF=0.30;LDAF=0.4188;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-1.76,-0.01,-5.00 +19 17955021 rs3212711 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.51;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=0.9969;ERATE=0.0029;EUR_AF=0.30;LDAF=0.3731;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 17973862 rs73020697 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.29;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2131;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.31 +19 18232778 rs273483 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.97;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9590;ERATE=0.0216;EUR_AF=0.94;LDAF=0.9528;RSQ=0.6515;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-2.11,-0.00 +19 18234441 rs740691 C T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.42;AMR_AF=0.54;AN=2;ASN_AF=0.69;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5372;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 18245512 rs2270623 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.32;AMR_AF=0.51;AN=2;ASN_AF=0.69;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5080;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18245807 rs12983325 C T 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.32;AMR_AF=0.51;AN=2;ASN_AF=0.69;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5079;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18245813 rs273499 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9451;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18248146 rs541225 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9450;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18252829 rs613339 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9456;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 18255359 rs8108738 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.31;AMR_AF=0.51;AN=2;ASN_AF=0.69;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5095;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.82,-0.00 +19 18257750 rs2072490 C T 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=0.9947;ERATE=0.0007;EUR_AF=0.49;LDAF=0.5144;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +19 18257875 rs273279 C T 100 PASS AA=c;AC=2;AF=0.81;AFR_AF=0.82;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=0.9919;ERATE=0.0009;EUR_AF=0.77;LDAF=0.8126;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +19 18258459 rs1566030 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.97;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.95;LDAF=0.9571;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +19 18273047 rs1011320 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.96;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9552;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +19 18279638 rs273269 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.80;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8774;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18285944 rs11554159 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.07;AVGPOST=0.9965;ERATE=0.0017;EUR_AF=0.27;LDAF=0.1944;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 18286546 rs200373 T A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.56;AMR_AF=0.46;AN=2;ASN_AF=0.21;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.52;LDAF=0.4347;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.89,-0.00,-5.00 +19 18287907 rs140154009 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9950;ERATE=0.0006;EUR_AF=0.02;LDAF=0.0178;RSQ=0.8846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.13,-0.59 +19 18288069 rs7125 A G 100 PASS AA=g;AC=1;AF=0.45;AFR_AF=0.57;AMR_AF=0.49;AN=2;ASN_AF=0.21;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4480;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 18304700 rs874628 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.28;LDAF=0.1928;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 18305578 rs16982263 G C 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.55;AMR_AF=0.60;AN=2;ASN_AF=0.15;AVGPOST=0.9962;ERATE=0.0031;EUR_AF=0.74;LDAF=0.5176;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +19 18305824 rs2271881 C T 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.27;AMR_AF=0.32;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.35;LDAF=0.2537;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 18322095 rs12611244 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.37;AMR_AF=0.59;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6080;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +19 18324329 rs2302209 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1860;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 18329240 rs1042050 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.48;AMR_AF=0.56;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4740;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 18368810 rs999813 G T 100 PASS AA=g;AC=1;AF=0.54;AFR_AF=0.66;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.47;LDAF=0.5377;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18375815 rs8103177 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.47;AMR_AF=0.23;AN=2;ASN_AF=0.29;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2705;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18375846 rs2277921 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.46;AMR_AF=0.23;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2702;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18375882 rs12608777 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1430;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18376407 rs8110972 T A 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.69;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5306;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18376517 rs61740752 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18376522 rs2277922 T G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.72;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5466;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18377274 rs3746186 A G 100 PASS AA=a;AC=1;AF=0.53;AFR_AF=0.69;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18377496 rs8104533 C G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.69;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5306;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18377647 rs8103906 G C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.71;AMR_AF=0.54;AN=2;ASN_AF=0.51;AVGPOST=0.9927;ERATE=0.0025;EUR_AF=0.45;LDAF=0.5388;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18377761 rs12609001 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1430;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18378219 rs1469023 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.72;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5466;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18420704 rs2227270 C A 100 PASS AA=c;AC=2;AF=0.49;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.76;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.48;LDAF=0.4868;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +19 18423402 rs2232968 T C 100 PASS AA=c;AC=2;AF=0.76;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.82;AVGPOST=0.9900;ERATE=0.0062;EUR_AF=0.76;LDAF=0.7632;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18453629 rs66732430 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1723;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 18496989 rs141542836 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0146;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +19 18497024 rs1059519 G C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.82;AMR_AF=0.72;AN=2;ASN_AF=0.69;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.68;LDAF=0.7239;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18497141 rs1059369 T A 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.17;AMR_AF=0.34;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2861;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18499238 rs1804826 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.15;AMR_AF=0.33;AN=2;ASN_AF=0.41;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2817;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18499780 rs1227733 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.90;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.81;LDAF=0.8500;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18499784 rs1055150 C G 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.56;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9986;ERATE=0.0010;EUR_AF=0.49;LDAF=0.5731;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18502835 rs6512265 G A 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.86;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7326;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 18544467 rs2288428 T C 100 PASS AA=c;AC=1;AF=0.40;AFR_AF=0.68;AMR_AF=0.40;AN=2;ASN_AF=0.25;AVGPOST=0.8755;ERATE=0.0094;EUR_AF=0.34;LDAF=0.4134;RSQ=0.8196;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-0.48,-0.48,-0.48 +19 18650278 rs7247733 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9783;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18679379 rs7648 C G 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.17;AMR_AF=0.52;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5046;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18684563 rs2302055 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.16;AMR_AF=0.52;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5037;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18685964 rs6554 G T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.96;AMR_AF=0.62;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7091;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18707878 rs7247346 A C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.96;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7351;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.34,-0.27 +19 18710535 rs2238647 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.53;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2843;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +19 18726856 rs709679 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5365;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18775077 rs1076235 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.48;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.31;LDAF=0.3997;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18778445 rs10421503 C G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.95;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.64;LDAF=0.7280;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 18974200 rs2238658 A G 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.39;AMR_AF=0.33;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4241;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 18989859 rs2075762 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.37;AVGPOST=0.9954;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1530;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 19011244 rs1127821 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.18;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3936;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +19 19014248 rs55988241 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.52;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2189;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 19017862 rs10330 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.39;AMR_AF=0.14;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1829;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 19023853 rs3177137 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.33;AMR_AF=0.58;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3843;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 19030689 rs2231993 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.44;AMR_AF=0.14;AN=2;ASN_AF=0.04;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1847;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 19032637 rs2231997 T C 100 PASS AA=t;AC=2;AF=0.69;AFR_AF=0.98;AMR_AF=0.80;AN=2;ASN_AF=0.33;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.71;LDAF=0.6860;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 19033089 rs2158004 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.45;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1885;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 19033387 rs2106660 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.45;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1876;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 19035428 rs61750860 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.38;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1150;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 19040312 rs1059240 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9992;RSQ=0.7162;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +19 19049198 rs1064351 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.12;AMR_AF=0.48;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3092;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 19136541 rs4808907 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7771;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 19168183 rs7258637 C T 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.56;AMR_AF=0.75;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7377;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 19217088 rs199634097 C G 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0010;RSQ=0.9093;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 19230868 rs756791 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.88;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9989;ERATE=0.0009;EUR_AF=0.84;LDAF=0.8701;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.50,-0.01 +19 19232068 rs199964943 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.08;AVGPOST=0.9584;ERATE=0.0410;EUR_AF=0.06;LDAF=0.0609;RSQ=0.7119;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:0.800:-1.89,-0.01,-3.74 +19 19256870 rs2238663 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=0.9879;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3286;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.22 +19 19414177 rs1978144 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 19431963 rs12460764 G T 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.33;AMR_AF=0.56;AN=2;ASN_AF=0.67;AVGPOST=0.9920;ERATE=0.0015;EUR_AF=0.68;LDAF=0.5761;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.36,-0.25 +19 19446936 rs769267 G A 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.32;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5778;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 19449686 rs2074090 G T 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.33;AMR_AF=0.56;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5763;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 19453521 rs2965191 T G 100 PASS 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AA=T;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0539;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 30433618 rs117820971 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.09;AN=2;ASN_AF=0.20;AVGPOST=0.9946;ERATE=0.0012;EUR_AF=0.04;LDAF=0.0986;RSQ=0.9724;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.950:-0.48,-0.48,-0.48 +19 30503162 rs16963628 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1120;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 31038995 rs1469705 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.51;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.31;LDAF=0.3625;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 31768416 rs3745784 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.59;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=0.9943;ERATE=0.0191;EUR_AF=0.11;LDAF=0.2844;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 31769763 rs12461253 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3492;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 32873698 rs2270399 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9064;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 32930069 rs6510249 G A 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.48;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5887;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 32954725 rs1544511 G A 100 PASS AA=g;AC=2;AF=0.59;AFR_AF=0.48;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5910;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33072118 rs11084660 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.28;AN=2;ASN_AF=0.02;AVGPOST=0.9867;ERATE=0.0005;EUR_AF=0.39;LDAF=0.1923;RSQ=0.9723;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.800:-0.12,-0.62,-4.22 +19 33072266 rs10411464 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9894;ERATE=0.0012;EUR_AF=0.91;LDAF=0.9504;RSQ=0.9192;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +19 33098632 rs2302970 G C 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.38;AN=2;ASN_AF=0.09;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.57;LDAF=0.2950;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.76 +19 33106621 rs405858 C T 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0013;EUR_AF=0.66;LDAF=0.4959;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33110149 rs28615461 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4588;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33110204 rs2287669 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.58;LDAF=0.4595;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33117666 rs6510271 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.70;AMR_AF=0.57;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6578;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33131336 rs10416829 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.83;AMR_AF=0.60;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7070;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33134323 rs200447574 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33134425 rs259229 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.15;AMR_AF=0.50;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4050;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33137337 rs74776662 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.21;AVGPOST=0.9993;ERATE=0.0024;EUR_AF=0.05;LDAF=0.0811;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33167455 rs259290 G T 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.37;AMR_AF=0.52;AN=2;ASN_AF=0.28;AVGPOST=0.9948;ERATE=0.0006;EUR_AF=0.63;LDAF=0.4623;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.76,-0.08 +19 33167879 rs259291 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.64;AMR_AF=0.59;AN=2;ASN_AF=0.34;AVGPOST=0.9910;ERATE=0.0013;EUR_AF=0.66;LDAF=0.5626;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.30,-0.02 +19 33183352 rs61732600 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=0.9888;ERATE=0.0009;EUR_AF=0.28;LDAF=0.2557;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.34,-0.27 +19 33349488 rs2287879 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.94;AMR_AF=0.57;AN=2;ASN_AF=0.87;AVGPOST=0.9917;ERATE=0.0025;EUR_AF=0.66;LDAF=0.7599;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.34 +19 33390796 rs10418340 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.9191;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33406442 rs7246178 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.9196;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33414420 rs4805825 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.25;AMR_AF=0.27;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.20;LDAF=0.3112;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 33430816 rs12461782 T G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5938;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33439158 rs12710001 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.87;LDAF=0.9176;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +19 33444511 rs80283382 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.1332;EUR_AF=0.50;LDAF=0.5017;RSQ=0.8563;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 33444707 rs10411735 C T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.42;AMR_AF=0.51;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4049;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33467357 rs2304102 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.39;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.4274;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33467576 rs7258185 G A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.36;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2398;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33467620 rs7247715 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.86;LDAF=0.9235;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33470874 rs8099835 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.79;AMR_AF=0.57;AN=2;ASN_AF=0.52;AVGPOST=0.9662;ERATE=0.0136;EUR_AF=0.55;LDAF=0.5938;RSQ=0.9494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.62 +19 33481388 rs7250684 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.98;AMR_AF=0.70;AN=2;ASN_AF=0.71;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.75;LDAF=0.7807;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-2.70,-0.01,-1.63 +19 33482904 rs3764639 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.29;AVGPOST=0.9982;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1126;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.52 +19 33487071 rs12610600 G C 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.79;AMR_AF=0.53;AN=2;ASN_AF=0.66;AVGPOST=0.9565;ERATE=0.0092;EUR_AF=0.51;LDAF=0.6096;RSQ=0.9375;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.200:-5.00,-1.17,-0.03 +19 33493678 rs74446640 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.0041;AMR_AF=0.17;AN=2;ASN_AF=0.28;AVGPOST=0.9971;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1073;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.93,-0.00,-5.00 +19 33502714 rs2288854 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.49;AMR_AF=0.26;AN=2;ASN_AF=0.27;AVGPOST=0.9978;ERATE=0.0011;EUR_AF=0.25;LDAF=0.3104;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-0.01,-1.48,-5.00 +19 33517515 rs28626308 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.08;AN=2;ASN_AF=0.14;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.06;LDAF=0.0841;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33579128 rs7259333 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.78;AMR_AF=0.30;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.4420;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33586739 rs13345542 G C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.78;AMR_AF=0.30;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.4420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33597816 rs10408093 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.78;AMR_AF=0.30;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.4424;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33600764 rs2287679 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.78;AMR_AF=0.30;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.25;LDAF=0.4432;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33602856 rs3786934 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.42;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1874;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33605300 rs10416265 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.73;AMR_AF=0.32;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0045;EUR_AF=0.26;LDAF=0.5320;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33605312 rs10421769 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.97;AMR_AF=0.62;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.6997;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 33610060 rs8113398 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.37;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0038;EUR_AF=0.12;LDAF=0.1814;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33617508 rs73039451 G A 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0385;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33617583 rs6510356 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.42;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1930;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33635761 rs3848596 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.51;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.32;LDAF=0.4469;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33635853 rs3848597 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.4484;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33635877 rs3848598 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.4479;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.70,-0.00,-5.00 +19 33635887 rs3848599 T G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.97;AMR_AF=0.61;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.37;LDAF=0.6007;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +19 33647379 rs11881580 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.50;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=0.9981;ERATE=0.0015;EUR_AF=0.07;LDAF=0.2227;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 33655144 rs1981827 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1399;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33663354 rs62125333 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1490;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 33693785 rs1056034 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0589;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 33696354 rs3745977 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0570;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-1.92,-0.01,-5.00 +19 33696621 rs3745975 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0567;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 33696708 rs2112800 T C 100 PASS AA=t;AC=1;AF=0.66;AFR_AF=0.60;AMR_AF=0.75;AN=2;ASN_AF=0.39;AVGPOST=0.9946;ERATE=0.0007;EUR_AF=0.85;LDAF=0.6557;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +19 33696897 rs11084712 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.14;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9936;ERATE=0.0005;EUR_AF=0.22;LDAF=0.2323;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-3.13,-0.47,-0.18 +19 33697546 rs1056041 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0566;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 33698291 rs3745974 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.61;AMR_AF=0.81;AN=2;ASN_AF=0.50;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.89;LDAF=0.7120;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +19 33700281 rs2303094 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0544;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 33702245 rs2241378 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.21;AMR_AF=0.54;AN=2;ASN_AF=0.29;AVGPOST=0.9960;ERATE=0.0083;EUR_AF=0.55;LDAF=0.4040;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 34302280 rs10426916 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.11;AN=2;ASN_AF=0.07;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1053;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 34710807 rs2599557 A C 100 PASS AA=N;AC=1;AF=0.27;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2719;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 34712654 rs536367 C T 100 PASS AA=t;AC=1;AF=0.28;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2761;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 34842488 rs392340 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.74;AMR_AF=0.44;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5928;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 34843761 rs397414 C A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.84;AMR_AF=0.46;AN=2;ASN_AF=0.82;AVGPOST=0.9968;ERATE=0.0007;EUR_AF=0.40;LDAF=0.6178;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.22 +19 34859457 rs2099099 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.93;AMR_AF=0.54;AN=2;ASN_AF=0.82;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6628;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 34868756 rs1062480 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 34885006 rs8108038 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.75;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9140;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 34942872 rs2161472 A T 100 PASS AA=-;AC=2;AF=0.95;AFR_AF=0.90;AMR_AF=0.97;AN=2;ASN_AF=0.97;AVGPOST=0.9934;ERATE=0.0074;EUR_AF=0.96;LDAF=0.9483;RSQ=0.9499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +19 34959979 rs7259160 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.74;AMR_AF=0.85;AN=2;ASN_AF=0.86;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.88;LDAF=0.8373;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35232677 rs61739988 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0198;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-1.03,-0.04,-5.00 +19 35420841 rs2546001 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.96;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5684;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35422808 rs10422961 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.26;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2920;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35424504 rs2859486 C A 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.66;AMR_AF=0.32;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3982;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35434238 rs1811 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.69;AMR_AF=0.44;AN=2;ASN_AF=0.62;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.51;LDAF=0.5681;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35434512 rs2651109 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.94;AMR_AF=0.47;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35435006 rs1345658 G A 100 PASS AA=a;AC=1;AF=0.63;AFR_AF=0.94;AMR_AF=0.47;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6294;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35449409 rs2651081 G A 100 PASS AA=g;AC=1;AF=0.31;AFR_AF=0.46;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3108;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35449760 rs2651080 G C 100 PASS AA=g;AC=1;AF=0.30;AFR_AF=0.43;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=0.34;LDAF=0.3057;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35450111 rs35715851 C T 100 PASS AA=c;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0247;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35450229 rs2651079 C T 100 PASS AA=t;AC=1;AF=0.62;AFR_AF=0.92;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0013;EUR_AF=0.51;LDAF=0.6239;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35451742 rs2651078 G A 100 PASS AA=g;AC=1;AF=0.31;AFR_AF=0.46;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3076;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35454604 rs2546028 A C 100 PASS AA=c;AC=1;AF=0.62;AFR_AF=0.86;AMR_AF=0.47;AN=2;ASN_AF=0.62;AVGPOST=0.9890;ERATE=0.0008;EUR_AF=0.53;LDAF=0.6143;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35454605 rs2546029 A G 100 PASS AA=g;AC=1;AF=0.62;AFR_AF=0.86;AMR_AF=0.47;AN=2;ASN_AF=0.62;AVGPOST=0.9877;ERATE=0.0013;EUR_AF=0.53;LDAF=0.6149;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35500919 rs11084797 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.62;AMR_AF=0.44;AN=2;ASN_AF=0.36;AVGPOST=0.9942;ERATE=0.0028;EUR_AF=0.42;LDAF=0.4505;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35504627 rs7251988 C A 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.23;AMR_AF=0.39;AN=2;ASN_AF=0.36;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3598;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35506729 rs2290647 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.21;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.34;LDAF=0.2835;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35510102 rs2290646 G C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.54;AMR_AF=0.40;AN=2;ASN_AF=0.20;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3706;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35556123 rs2305744 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.27;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6301;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35556281 rs2305745 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.31;AMR_AF=0.75;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6316;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35556729 rs1672992 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.32;AMR_AF=0.84;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7293;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35556744 rs1688030 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.77;AMR_AF=0.94;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8770;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35610245 rs2278994 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0041;EUR_AF=0.72;LDAF=0.6498;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0112;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35612159 rs2290649 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.21;AMR_AF=0.38;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2811;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 35612168 rs1688016 T A 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3062;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35613623 rs1688017 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3035;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35614336 rs1672974 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.55;AMR_AF=0.61;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5928;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35616086 rs11084800 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.34;AMR_AF=0.23;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3109;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35616087 rs3826989 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=0.9988;ERATE=0.0021;EUR_AF=0.25;LDAF=0.2507;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 35616315 rs12610146 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.22;AVGPOST=0.9873;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2743;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35616316 rs12610234 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.22;AVGPOST=0.9872;ERATE=0.0004;EUR_AF=0.34;LDAF=0.2739;RSQ=0.9776;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35617270 rs1319969 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0021;EUR_AF=0.38;LDAF=0.3178;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35617639 rs1687998 C G 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.23;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.38;LDAF=0.3047;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.87,-0.27,-0.34 +19 35622492 rs1688001 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.22;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9937;ERATE=0.0006;EUR_AF=0.39;LDAF=0.3098;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.15,-0.48,-0.18 +19 35622695 rs1673007 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.98;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9670;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +19 35624890 rs11666576 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.66;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5498;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-1.56,-0.01,-5.00 +19 35642297 rs11673428 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.20;AMR_AF=0.10;AN=2;ASN_AF=0.04;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1137;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35644855 rs62111370 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1658;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 35648365 rs1688005 T G 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.37;AMR_AF=0.38;AN=2;ASN_AF=0.81;AVGPOST=0.9982;ERATE=0.0034;EUR_AF=0.26;LDAF=0.4479;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35649324 rs1633915 C G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.86;AMR_AF=0.87;AN=2;ASN_AF=0.98;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8629;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35655151 rs1672994 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.88;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8236;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35660508 rs12110 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8419;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35719106 rs565791 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.4977;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35719257 rs11673347 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.3167;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35719577 rs34873156 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2091;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35740069 rs10412357 C G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.29;AN=2;ASN_AF=0.32;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2679;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +19 35741456 rs2073900 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.39;AMR_AF=0.69;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.74;LDAF=0.5867;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 35757250 rs916147 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2718;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35757469 rs12459658 A C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.22;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1554;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 35770056 rs2280746 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2067;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.89 +19 35770174 rs12742 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.44;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9947;ERATE=0.0008;EUR_AF=0.36;LDAF=0.3828;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.81,-0.08,-1.96 +19 35790503 rs3746248 G A 100 PASS AA=g;AC=1;AF=0.38;AFR_AF=0.72;AMR_AF=0.26;AN=2;ASN_AF=0.38;AVGPOST=0.9984;ERATE=0.0019;EUR_AF=0.21;LDAF=0.3778;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 35835940 rs45453699 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.41;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3166;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 35843086 rs2301151 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=0.76;AVGPOST=0.9864;ERATE=0.0010;EUR_AF=0.75;LDAF=0.8154;RSQ=0.9681;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +19 35849926 rs79251979 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=0.9715;ERATE=0.0173;EUR_AF=0.22;LDAF=0.1893;RSQ=0.9202;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-1.64,-0.01,-5.00 +19 35850672 rs142125121 T C 100 PASS AA=t;AC=1;AF=0.23;AFR_AF=0.27;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=0.8414;ERATE=0.0676;EUR_AF=0.20;LDAF=0.2727;RSQ=0.5979;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-1.12,-0.03,-5.00 +19 35978577 rs2293690 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1728;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 35991442 rs909072 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 35992691 rs8100640 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.87;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6174;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +19 36002710 rs4806162 C A 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.36;AMR_AF=0.26;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0032;EUR_AF=0.15;LDAF=0.2943;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36003721 rs7254211 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1783;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 36004106 rs4806163 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.99;AMR_AF=0.74;AN=2;ASN_AF=0.89;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8514;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36004171 rs12460932 C A 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.27;AN=2;ASN_AF=0.36;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2705;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0090;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36033460 rs2239945 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.29;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2066;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36038221 rs759996 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2043;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36038390 rs7599 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.53;AMR_AF=0.68;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6504;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36042531 rs12977572 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0279;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36050969 rs2733743 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.44;AVGPOST=0.9869;ERATE=0.0004;EUR_AF=0.89;LDAF=0.7568;RSQ=0.9789;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36104890 rs45510191 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0412;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36105908 rs7249516 G A 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.14;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1323;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.42 +19 36105917 rs34572637 A G 100 PASS AA=a;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.27;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2347;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +19 36106337 rs3814983 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.26;LDAF=0.3849;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36113459 rs2285413 G A 100 PASS AA=g;AC=1;AF=0.39;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3857;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36113658 rs2285414 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.82;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7038;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36124176 rs8106576 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.75;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4580;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36142187 rs7991 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.21;AMR_AF=0.14;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1705;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 36142296 rs61220012 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1303;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36159368 rs2267586 T G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1422;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36164108 rs75289222 G T 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0983;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36164495 rs113559151 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.14;AN=2;ASN_AF=0.24;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1501;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.43 +19 36168872 rs2285420 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0991;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +19 36168914 rs2285421 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.51;LDAF=0.6129;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 36206050 rs2227278 A C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36207336 rs2234375 G C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36221051 rs2242520 G A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.50;AVGPOST=0.9606;ERATE=0.0905;EUR_AF=0.20;LDAF=0.3334;RSQ=0.9364;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36222857 rs16970649 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9991;ERATE=0.0007;EUR_AF=0.12;LDAF=0.1025;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36223111 rs61351824 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1043;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +19 36223747 rs73590585 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9962;ERATE=0.0011;EUR_AF=0.13;LDAF=0.1073;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36224161 rs112013670 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.08;AVGPOST=0.9664;ERATE=0.0032;EUR_AF=0.13;LDAF=0.1187;RSQ=0.8840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +19 36224705 rs231591 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.82;AMR_AF=0.45;AN=2;ASN_AF=0.52;AVGPOST=0.9959;ERATE=0.0021;EUR_AF=0.48;LDAF=0.5630;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36228667 rs73590598 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1005;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36228954 rs2242522 G T 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.18;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=0.9970;ERATE=0.0007;EUR_AF=0.50;LDAF=0.4313;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 36230767 rs34562867 A G 100 PASS AA=a;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1019;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36236120 rs231597 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9726;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36268771 rs231228 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.35;AMR_AF=0.34;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2797;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36269915 rs231230 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5713;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.14,-0.00 +19 36270052 rs231231 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.72;AMR_AF=0.57;AN=2;ASN_AF=0.75;AVGPOST=0.9976;ERATE=0.0018;EUR_AF=0.37;LDAF=0.5823;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +19 36273230 rs231223 C G 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.57;AN=2;ASN_AF=0.62;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5419;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36273308 rs35297478 G A 100 PASS AA=g;AC=2;AF=0.12;AFR_AF=0.06;AMR_AF=0.16;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1175;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36276403 rs120959 T G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.70;AMR_AF=0.57;AN=2;ASN_AF=0.74;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5732;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36278470 rs231235 C G 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.68;AMR_AF=0.56;AN=2;ASN_AF=0.63;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5377;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36302921 rs12462360 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.34;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2562;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36303664 rs3848666 G C 100 PASS AA=g;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.12;AN=2;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.15;LDAF=0.0761;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36321910 rs731934 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3853;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36322270 rs2071327 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3871;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36342212 rs3814995 C T 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.63;AVGPOST=0.9952;ERATE=0.0015;EUR_AF=0.32;LDAF=0.3377;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36355595 rs382789 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36486445 rs7249826 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9959;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9945;RSQ=0.6801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.30,-0.02 +19 36497358 rs2285422 C G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.82;AVGPOST=0.9914;ERATE=0.0012;EUR_AF=0.95;LDAF=0.9232;RSQ=0.9551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36517655 rs10418015 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.65;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=0.50;LDAF=0.4986;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.97,-0.05 +19 36530332 rs10420353 G A 100 PASS AA=g;AC=2;AF=0.30;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.34;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3024;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.03 +19 36530343 rs10421966 C T 100 PASS AA=c;AC=2;AF=0.30;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.34;AVGPOST=0.9958;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3042;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +19 36558712 rs10423651 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2898;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36582270 rs2301736 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.31;AMR_AF=0.51;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4716;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36590329 rs2285745 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.62;AVGPOST=0.9965;ERATE=0.0025;EUR_AF=0.68;LDAF=0.6838;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36594659 rs2074435 A T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.83;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7315;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36595436 rs1008328 A C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.71;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.78;LDAF=0.7637;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36605647 rs2227260 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.80;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9982;ERATE=0.0011;EUR_AF=0.63;LDAF=0.7251;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36605794 rs2231568 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.80;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.63;LDAF=0.7233;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36612396 rs2075474 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.42;AMR_AF=0.34;AN=2;ASN_AF=0.33;AVGPOST=0.9943;ERATE=0.0014;EUR_AF=0.44;LDAF=0.3931;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.150:-4.40,-0.00,-3.44 +19 36640769 rs14100 T C 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9785;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 36674305 rs4805162 A G 100 PASS AA=g;AC=1;AF=0.64;AFR_AF=0.86;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6444;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 36727365 rs2070132 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.31;AMR_AF=0.37;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.37;LDAF=0.3729;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 36940760 rs2967532 G T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.62;AMR_AF=0.45;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.57;LDAF=0.4808;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 37117302 rs3108171 A G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.73;AMR_AF=0.64;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6997;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 37118439 rs61732180 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.24;LDAF=0.1477;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 37210529 rs3108200 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.39;AMR_AF=0.23;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2888;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 37210805 rs3108201 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.76;AMR_AF=0.66;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.7098;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 37441111 rs571294 C T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.76;AMR_AF=0.62;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0026;EUR_AF=0.58;LDAF=0.5689;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 37441462 rs546589 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.75;AMR_AF=0.58;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.57;LDAF=0.5489;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 37441980 rs1644634 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.72;AMR_AF=0.57;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5398;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 37726433 rs320880 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.23;AMR_AF=0.16;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.18;LDAF=0.2071;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38027755 rs12462365 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0004;LDAF=0.0085;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38055612 rs4802029 A T 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.41;AMR_AF=0.25;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.17;LDAF=0.3629;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38056574 rs28512414 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.41;AMR_AF=0.25;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.3624;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38091932 rs1975937 A T 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.41;AMR_AF=0.25;AN=2;ASN_AF=0.65;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.16;LDAF=0.3621;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38189440 rs958305 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.54;AMR_AF=0.69;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.83;LDAF=0.6047;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38189616 rs2075284 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.60;AMR_AF=0.75;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.84;LDAF=0.6420;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38202516 rs2909097 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9906;RSQ=0.9366;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 38229378 rs1291 G A 100 PASS AA=g;AC=1;AF=0.59;AFR_AF=0.39;AMR_AF=0.72;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.5877;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38229824 rs3095726 T C 100 PASS AA=-;AC=1;AF=0.74;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7347;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38230720 rs3752365 C G 100 PASS AA=c;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1239;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38696708 rs74573108 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.26;AN=2;ASN_AF=0.12;AVGPOST=0.9954;ERATE=0.0005;EUR_AF=0.27;LDAF=0.1958;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.29 +19 38696714 rs10419131 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.67;AMR_AF=0.37;AN=2;ASN_AF=0.30;AVGPOST=0.9910;ERATE=0.0006;EUR_AF=0.39;LDAF=0.4244;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.10 +19 38706989 rs2278431 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.64;AMR_AF=0.57;AN=2;ASN_AF=0.78;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.49;LDAF=0.6125;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38708398 rs2304175 A C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.96;AMR_AF=0.73;AN=2;ASN_AF=0.89;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8049;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38709568 rs2255456 C T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.96;AMR_AF=0.73;AN=2;ASN_AF=0.89;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8028;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38743506 rs73030311 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0859;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38743591 rs10993 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0736;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38779856 rs3745948 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0475;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38781218 rs111990687 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0051;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38798086 rs3178327 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.32;LDAF=0.3762;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38800165 rs3900981 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.23;LDAF=0.2303;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.85 +19 38850246 rs60071299 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.63;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3899;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.55,-0.00,-5.00 +19 38860603 rs2286547 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0599;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38861333 rs1052375 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.52;LDAF=0.3089;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38861362 rs2286550 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0708;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38882781 rs12609878 T G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.24;AMR_AF=0.21;AN=2;ASN_AF=0.53;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2703;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38893950 rs3745960 C A 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=0.9950;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0544;RSQ=0.9665;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.69,-0.10 +19 38896244 rs3745962 C A 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0581;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38899548 rs3745964 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.14;AVGPOST=0.9931;ERATE=0.0005;EUR_AF=0.09;LDAF=0.1071;RSQ=0.9716;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38905683 rs10412098 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.74;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9952;ERATE=0.0007;EUR_AF=0.19;LDAF=0.3258;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +19 38905792 rs12462583 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.33;AMR_AF=0.10;AN=2;ASN_AF=0.19;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.05;LDAF=0.1580;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 38935280 rs2229139 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.48;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.64;LDAF=0.6032;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 38939408 rs10406027 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9321;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 38945851 rs7254832 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9287;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 38946182 rs2288888 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.51;AMR_AF=0.71;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=0.69;LDAF=0.6358;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 38946215 rs2288889 G C 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.51;AMR_AF=0.71;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6371;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 38949904 rs3745847 C T 100 PASS AA=c;AC=2;AF=0.62;AFR_AF=0.49;AMR_AF=0.70;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6192;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 38956803 rs2228069 G A 100 PASS AA=g;AC=2;AF=0.60;AFR_AF=0.56;AMR_AF=0.67;AN=2;ASN_AF=0.54;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5994;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 38991640 rs2960323 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.36;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2444;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.10,-0.00,-4.40 +19 38993372 rs1469695 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.50;AMR_AF=0.38;AN=2;ASN_AF=0.33;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3724;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.40,-0.00,-5.00 +19 38993556 rs1469698 C T 100 PASS AA=c;AC=1;AF=0.16;AFR_AF=0.30;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1631;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38993638 rs1469699 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.52;AMR_AF=0.38;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3766;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38994910 rs2229144 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.50;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3615;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38995438 rs2960340 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.50;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3619;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38995510 rs2915951 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.50;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3652;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38995975 rs2915952 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3506;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38996066 rs2915953 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.45;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=0.9915;ERATE=0.0056;EUR_AF=0.30;LDAF=0.3440;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38996620 rs2960342 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3515;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38996623 rs2960343 T G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9985;ERATE=0.0014;EUR_AF=0.31;LDAF=0.3499;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38996990 rs2229146 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3551;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38997076 rs2960344 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3514;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38997214 rs2960345 T G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.31;LDAF=0.3511;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38997459 rs2915958 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3515;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38997609 rs2915959 T A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9985;ERATE=0.0018;EUR_AF=0.31;LDAF=0.3496;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 38997635 rs2960346 A C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.31;LDAF=0.3519;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39002691 rs2960338 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.26;AMR_AF=0.16;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.15;LDAF=0.1539;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39002725 rs2071089 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3519;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39025341 rs4802583 T G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0338;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39025366 rs4802584 C G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0338;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39034051 rs45613041 T A 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0338;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39034386 rs2292797 C G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0338;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39034388 rs2292798 C T 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0339;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39034397 rs2292799 A G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0338;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39068641 rs1468571 A C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.36;AMR_AF=0.14;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1398;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39086604 rs55922338 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.12;AMR_AF=0.12;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1240;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39100594 rs2287734 G A 100 PASS AA=.;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1037;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39100688 rs13345914 G A 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.14;AMR_AF=0.12;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1261;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39101669 rs2287733 A G 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.32;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.16;LDAF=0.2738;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39101870 rs2287732 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.32;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2734;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39101879 rs2287731 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.20;AMR_AF=0.12;AN=2;ASN_AF=0.25;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.03;LDAF=0.1416;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39106924 rs2303041 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.49;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.03;LDAF=0.1744;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39191383 rs2112649 G C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.55;AMR_AF=0.66;AN=2;ASN_AF=0.64;AVGPOST=0.9959;ERATE=0.0014;EUR_AF=0.77;LDAF=0.6672;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39196745 rs3745859 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.24;AMR_AF=0.31;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3814;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39224413 rs4801861 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.97;AMR_AF=0.73;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.78;LDAF=0.7795;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39233146 rs936524 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.56;AMR_AF=0.66;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.77;LDAF=0.6696;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39280276 rs201263690 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.41;AMR_AF=0.60;AN=2;ASN_AF=0.87;AVGPOST=0.8290;ERATE=0.0141;EUR_AF=0.73;LDAF=0.6543;RSQ=0.7025;SNPSOURCE=EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:1.850:-0.48,-0.48,-0.48 +19 39322087 rs9419 T G 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.19;AMR_AF=0.43;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4022;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39328145 rs2278010 A C 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.12;AMR_AF=0.43;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.3803;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39406442 rs11670675 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1753;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39408360 rs7508411 A G 100 PASS AA=g;AC=2;AF=0.81;AFR_AF=0.90;AMR_AF=0.78;AN=2;ASN_AF=0.98;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.65;LDAF=0.8136;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39408688 rs4803034 C G 100 PASS AA=g;AC=2;AF=0.82;AFR_AF=0.91;AMR_AF=0.78;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.8149;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 39416966 rs4803045 G T 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.23;AVGPOST=0.9951;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1787;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39416967 rs4803046 A T 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.23;AVGPOST=0.9952;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1785;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39421388 rs730078 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.93;AMR_AF=0.78;AN=2;ASN_AF=0.98;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.65;LDAF=0.8205;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 39433299 rs8113389 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.92;AMR_AF=0.77;AN=2;ASN_AF=0.98;AVGPOST=0.9939;ERATE=0.0009;EUR_AF=0.66;LDAF=0.8164;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39440918 rs2304117 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.29;AMR_AF=0.39;AN=2;ASN_AF=0.70;AVGPOST=0.9727;ERATE=0.0040;EUR_AF=0.42;LDAF=0.4597;RSQ=0.9617;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-3.14,-0.48,-0.18 +19 39440966 rs2304118 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.30;AMR_AF=0.38;AN=2;ASN_AF=0.70;AVGPOST=0.9915;ERATE=0.0009;EUR_AF=0.42;LDAF=0.4602;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-1.98,-0.00,-3.59 +19 39589189 rs55878600 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.36;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2284;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39589334 rs560364 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8030;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39590955 rs8110736 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.74;AMR_AF=0.56;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6353;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39591748 rs11673089 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2270;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39687592 rs12462614 T C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9951;ERATE=0.0011;EUR_AF=0.31;LDAF=0.3871;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.70,-0.10 +19 39688815 rs12610064 C T 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0016;EUR_AF=0.31;LDAF=0.3822;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39688901 rs12610093 G T 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.35;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.31;LDAF=0.3795;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39689943 rs12610530 G A 100 PASS AA=A;AC=2;AF=0.40;AFR_AF=0.41;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3947;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.07,-0.04 +19 39691136 rs11672471 C A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.40;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3946;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39691216 rs11672475 A T 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.25;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3531;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39691239 rs11672479 A G 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.42;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3986;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 39735106 rs8103142 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.56;AMR_AF=0.40;AN=2;ASN_AF=0.04;AVGPOST=0.9500;ERATE=0.0229;EUR_AF=0.27;LDAF=0.2877;RSQ=0.9255;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.30,-0.01,-1.84 +19 39735644 rs28416813 C G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.57;AMR_AF=0.43;AN=2;ASN_AF=0.07;AVGPOST=0.9800;ERATE=0.0093;EUR_AF=0.33;LDAF=0.3304;RSQ=0.9703;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.800:-0.40,-0.23,-2.09 +19 39760191 rs8103362 A G 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.29;AMR_AF=0.26;AN=2;ASN_AF=0.04;AVGPOST=0.9956;ERATE=0.0010;EUR_AF=0.22;LDAF=0.1933;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.38,-0.49,-0.17 +19 39760336 rs58736064 T G 100 PASS AA=t;AC=2;AF=0.18;AFR_AF=0.24;AMR_AF=0.24;AN=2;ASN_AF=0.07;AVGPOST=0.9684;ERATE=0.0057;EUR_AF=0.19;LDAF=0.1776;RSQ=0.9252;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.650:-2.82,-0.45,-0.19 +19 39760435 rs59746524 T C 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.19;AMR_AF=0.20;AN=2;ASN_AF=0.05;AVGPOST=0.9457;ERATE=0.0100;EUR_AF=0.14;LDAF=0.1397;RSQ=0.8536;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.500:-2.17,-0.41,-0.22 +19 39826597 rs251905 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.44;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1743;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39898667 rs3746083 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0422;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39905903 rs3859551 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.25;AMR_AF=0.24;AN=2;ASN_AF=0.02;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1675;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.61,-0.12 +19 39906985 rs10401595 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.24;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1644;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39907036 rs2277743 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.24;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1644;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39908574 rs35466645 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.20;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1523;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-2.61,-0.00,-3.62 +19 39914308 rs31725 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.65;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9982;ERATE=0.0093;EUR_AF=0.47;LDAF=0.5279;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39914748 rs31726 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.65;AMR_AF=0.48;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5347;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39915637 rs31727 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.65;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5592;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39915758 rs31728 C G 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.65;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9944;ERATE=0.0022;EUR_AF=0.53;LDAF=0.5582;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +19 39923952 rs17627 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.45;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2231;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39924129 rs566130 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.81;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6010;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39936502 rs1932 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.51;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5874;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39944082 rs1130180 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.73;AMR_AF=0.52;AN=2;ASN_AF=0.50;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.56;LDAF=0.5777;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +19 39949935 rs189785280 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.81,-0.01,-5.00 +19 39959519 rs2304218 G T 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0310;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39963828 rs45568533 T A 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.63;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4575;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39971622 rs2304221 C G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.82;AMR_AF=0.56;AN=2;ASN_AF=0.51;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.56;LDAF=0.6052;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39976464 rs4803245 C G 100 PASS AA=c;AC=1;AF=0.59;AFR_AF=0.78;AMR_AF=0.55;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5942;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39976969 rs1865094 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.31;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=0.9965;ERATE=0.0227;EUR_AF=0.41;LDAF=0.3752;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39977173 rs8112528 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.21;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9989;ERATE=0.0047;EUR_AF=0.21;LDAF=0.1726;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39978787 rs201425913 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0010;RSQ=0.9203;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 39991237 rs2304223 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.28;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2276;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39993415 rs2278440 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.28;AN=2;ASN_AF=0.11;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.34;LDAF=0.2284;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +19 39993560 rs8107127 T G 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.11;AVGPOST=0.9919;ERATE=0.0012;EUR_AF=0.34;LDAF=0.2422;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.44,-0.20,-2.11 +19 39994711 rs1110627 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.75;AMR_AF=0.53;AN=2;ASN_AF=0.55;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5943;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 39996027 rs2304214 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.28;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2283;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 40023308 rs1123301 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.70;AN=2;ASN_AF=0.82;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.76;LDAF=0.7779;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +19 40030704 rs7252027 C T 100 PASS AA=.;AC=1;AF=0.20;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.26;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2025;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 40196627 rs72480733 G A 100 PASS AA=.;AC=2;AF=0.17;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1694;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 40318086 rs12977762 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.73;AMR_AF=0.44;AN=2;ASN_AF=0.17;AVGPOST=0.9911;ERATE=0.0025;EUR_AF=0.52;LDAF=0.4608;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 40328339 rs62621202 C A 100 PASS AA=c;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.09;AN=2;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.12;LDAF=0.0672;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 40366362 rs3855679 G C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.87;AMR_AF=0.59;AN=2;ASN_AF=0.78;AVGPOST=0.9914;ERATE=0.0006;EUR_AF=0.64;LDAF=0.7170;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.81,-0.08,-2.30 +19 40367444 rs201370318 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.33;AMR_AF=0.23;AN=2;ASN_AF=0.18;AVGPOST=0.9652;ERATE=0.0008;EUR_AF=0.21;LDAF=0.2315;RSQ=0.9245;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-2.96,-0.46,-0.19 +19 40368395 rs28472548 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.68;AMR_AF=0.60;AN=2;ASN_AF=0.74;AVGPOST=0.9618;ERATE=0.0534;EUR_AF=0.59;LDAF=0.6500;RSQ=0.8734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 40370346 rs140913216 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.41;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=0.7867;ERATE=0.0388;EUR_AF=0.42;LDAF=0.4234;RSQ=0.4923;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-1.27,-0.02,-4.70 +19 40402410 rs2023286 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.31;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=0.9887;ERATE=0.0008;EUR_AF=0.17;LDAF=0.1885;RSQ=0.9715;SNPSOURCE=EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +19 40405899 rs7507507 G T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.34;AMR_AF=0.23;AN=2;ASN_AF=0.11;AVGPOST=0.9690;ERATE=0.0064;EUR_AF=0.25;LDAF=0.2287;RSQ=0.9473;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 40406019 rs2355719 G A 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.40;AN=2;ASN_AF=0.22;AVGPOST=0.9948;ERATE=0.0014;EUR_AF=0.34;LDAF=0.2810;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.86 +19 40408128 rs4803310 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.27;AMR_AF=0.17;AN=2;ASN_AF=0.11;AVGPOST=0.9899;ERATE=0.0023;EUR_AF=0.15;LDAF=0.1696;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-0.08,-0.76,-5.00 +19 40408146 rs56186636 G A 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=0.9946;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2813;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.43,-0.20 +19 40408268 rs34938990 G T 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=0.9753;ERATE=0.0072;EUR_AF=0.28;LDAF=0.2157;RSQ=0.9518;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:0.950:-0.29,-0.39,-1.13 +19 40408821 rs11083543 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2861;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.40,-0.22 +19 40408857 rs4802064 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.82;AMR_AF=0.78;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6970;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.63,-0.01 +19 40419558 rs12459958 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1325;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 40420087 rs12460562 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1307;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 40421612 rs34939346 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9740;ERATE=0.0006;EUR_AF=0.19;LDAF=0.1173;RSQ=0.9095;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-3.70,-0.51,-0.16 +19 40719076 rs1129156 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.83;AMR_AF=0.76;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7538;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 40719497 rs34886198 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.13;AN=2;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0285;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.84 +19 40720079 rs3746005 C T 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.81;AMR_AF=0.75;AN=2;ASN_AF=0.67;AVGPOST=0.9661;ERATE=0.0039;EUR_AF=0.74;LDAF=0.7321;RSQ=0.9290;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +19 40723844 rs79666308 C T 100 PASS AA=c;AC=1;AF=0.40;AFR_AF=0.10;AMR_AF=0.51;AN=2;ASN_AF=0.47;AVGPOST=0.9625;ERATE=0.0046;EUR_AF=0.50;LDAF=0.4086;RSQ=0.9436;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.200:-3.06,-0.47,-0.18 +19 40742320 rs2304189 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.82;AMR_AF=0.76;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7391;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 40875800 rs3745198 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.04;AMR_AF=0.49;AN=2;ASN_AF=0.48;AVGPOST=0.9922;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3713;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-0.95,-0.05,-5.00 +19 40875810 rs3745199 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.04;AMR_AF=0.48;AN=2;ASN_AF=0.48;AVGPOST=0.9830;ERATE=0.0025;EUR_AF=0.44;LDAF=0.3635;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-1.07,-0.04,-5.00 +19 40886742 rs56365273 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 40886962 rs145470994 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=0.9994;ERATE=0.0008;LDAF=0.0271;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 40890052 rs56003460 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0293;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 40900865 rs268674 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=0.9888;ERATE=0.0015;EUR_AF=0.93;LDAF=0.9556;RSQ=0.9016;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 40901496 rs268673 T C 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.31;AMR_AF=0.44;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3136;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 40901604 rs268672 A G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.79;AMR_AF=0.53;AN=2;ASN_AF=0.22;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4968;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 40901614 rs268671 A G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.79;AMR_AF=0.53;AN=2;ASN_AF=0.22;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4968;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 40903788 rs4803335 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0283;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.87 +19 40928944 rs4150992 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.59;AMR_AF=0.25;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2362;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 40929363 rs268687 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.84;AMR_AF=0.55;AN=2;ASN_AF=0.23;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5102;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 40964312 rs1061197 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=0.9833;ERATE=0.0077;EUR_AF=0.13;LDAF=0.1127;RSQ=0.9409;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41008178 rs117958811 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0280;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41010047 rs843779 C G 100 PASS AA=g;AC=1;AF=0.60;AFR_AF=0.96;AMR_AF=0.49;AN=2;ASN_AF=0.28;AVGPOST=0.9845;ERATE=0.0061;EUR_AF=0.66;LDAF=0.5997;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41071701 rs62107869 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1222;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.100:-4.70,-0.02,-1.41 +19 41075662 rs1165837 G C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.66;AMR_AF=0.43;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4743;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41078220 rs1165841 G C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.66;AMR_AF=0.43;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4739;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41173880 rs113525110 C T 100 PASS AA=c;AC=2;AF=0.62;AFR_AF=0.84;AMR_AF=0.56;AN=2;ASN_AF=0.55;AVGPOST=0.9499;ERATE=0.0171;EUR_AF=0.57;LDAF=0.6126;RSQ=0.9248;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.77,-0.08 +19 41206208 rs2246095 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.70;AMR_AF=0.43;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5507;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41209477 rs11538385 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2194;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41211056 rs3865452 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.49;LDAF=0.4612;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41224204 rs28493229 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0944;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41283365 rs2233159 C G 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.76;AMR_AF=0.91;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8460;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41289756 rs2287692 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0951;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41350664 rs1809810 A T 100 PASS AA=-;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9943;ERATE=0.0057;EUR_AF=0.98;LDAF=0.9873;RSQ=0.8169;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.21,-0.03 +19 41354712 rs8192725 A G 100 PASS AA=-;AC=1;AF=0.80;AFR_AF=0.83;AMR_AF=0.80;AN=2;ASN_AF=0.80;AVGPOST=0.9928;ERATE=0.0006;EUR_AF=0.78;LDAF=0.7981;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41356281 rs1137115 T C 100 PASS AA=-;AC=1;AF=0.79;AFR_AF=0.80;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=0.9963;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7886;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.00 +19 41356379 rs28399433 A C 100 PASS AA=-;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.27;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1338;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.08 +19 41381647 rs12460590 A C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.66;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=0.9565;ERATE=0.0425;EUR_AF=0.54;LDAF=0.5990;RSQ=0.9433;SNPSOURCE=EXOME;THETA=0.0073;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +19 41383153 rs2261144 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.18;AMR_AF=0.45;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3048;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41383799 rs3869579 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.42;AMR_AF=0.69;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5085;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 41384675 rs4079366 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9845;ERATE=0.0098;EUR_AF=0.73;LDAF=0.7726;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41386136 rs4142867 A C 100 PASS AA=a;AC=1;AF=0.51;AFR_AF=0.42;AMR_AF=0.69;AN=2;ASN_AF=0.47;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5086;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-1.93,-0.01,-3.66 +19 41386420 rs56081734 A C 100 PASS AA=N;AC=1;AF=0.51;AFR_AF=0.41;AMR_AF=0.68;AN=2;ASN_AF=0.47;AVGPOST=0.9948;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5054;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41386494 rs3815710 A C 100 PASS AA=N;AC=1;AF=0.40;AFR_AF=0.28;AMR_AF=0.58;AN=2;ASN_AF=0.40;AVGPOST=0.9511;ERATE=0.0024;EUR_AF=0.38;LDAF=0.3946;RSQ=0.9395;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 0|1:1.000:-3.49,-0.00,-5.00 +19 41386527 rs58798281 G A 100 PASS AA=N;AC=1;AF=0.42;AFR_AF=0.32;AMR_AF=0.60;AN=2;ASN_AF=0.41;AVGPOST=0.9400;ERATE=0.0058;EUR_AF=0.41;LDAF=0.4183;RSQ=0.9247;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.70 +19 41386544 rs71337574 C G 100 PASS AA=N;AC=1;AF=0.44;AFR_AF=0.34;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9582;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4371;RSQ=0.9495;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.96,-0.00,-5.00 +19 41386547 rs74219554 G C 100 PASS AA=N;AC=1;AF=0.45;AFR_AF=0.35;AMR_AF=0.63;AN=2;ASN_AF=0.42;AVGPOST=0.9539;ERATE=0.0006;EUR_AF=0.44;LDAF=0.4437;RSQ=0.9420;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.27,-0.00,-5.00 +19 41387620 rs10425150 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.35;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9727;ERATE=0.0006;EUR_AF=0.42;LDAF=0.4343;RSQ=0.9650;SNPSOURCE=LOWCOV,EXOME;THETA=0.0152;VT=SNP GT:DS:GL 0|1:1.000:-1.37,-0.02,-5.00 +19 41387647 rs10425169 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.31;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=0.9687;ERATE=0.0007;EUR_AF=0.38;LDAF=0.3964;RSQ=0.9606;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41387669 rs10425185 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.96;AMR_AF=0.83;AN=2;ASN_AF=0.65;AVGPOST=0.9843;ERATE=0.0009;EUR_AF=0.75;LDAF=0.7858;RSQ=0.9717;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-3.10,-0.00,-5.00 +19 41512792 rs4803419 C T 100 PASS AA=.;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3080;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41512841 rs3745274 G T 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2673;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41700493 rs338599 G C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.86;AMR_AF=0.93;AN=2;ASN_AF=0.79;AVGPOST=0.9981;ERATE=0.0092;EUR_AF=0.94;LDAF=0.8793;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0207;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41704832 rs338592 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 41725271 rs10411012 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.55;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9799;ERATE=0.0012;EUR_AF=0.47;LDAF=0.4483;RSQ=0.9687;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-2.13,-0.00,-3.74 +19 41743861 rs7249222 A G 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41811730 rs12745 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9953;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41838206 rs8179181 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.0035;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.25;LDAF=0.1056;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.33 +19 41858921 rs1800470 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.59;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=0.9497;ERATE=0.0046;EUR_AF=0.60;LDAF=0.5487;RSQ=0.9192;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +19 41863777 rs11668109 A C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.69;AMR_AF=0.55;AN=2;ASN_AF=0.16;AVGPOST=0.9956;ERATE=0.0006;EUR_AF=0.67;LDAF=0.5218;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41869392 rs2241714 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.85;AMR_AF=0.59;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6514;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41869468 rs2241713 G C 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.59;AMR_AF=0.53;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.60;LDAF=0.5546;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41889748 rs12602 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.87;AMR_AF=0.56;AN=2;ASN_AF=0.46;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6106;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +19 41903220 rs10853751 G A 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.86;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6065;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41919944 rs3213861 A C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6097;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41928652 rs284652 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6101;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41928701 rs284653 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.20;AMR_AF=0.37;AN=2;ASN_AF=0.09;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.42;LDAF=0.2783;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +19 41928724 rs284654 G A 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.76;AMR_AF=0.55;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5842;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.36,-0.00 +19 41930396 rs4674 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6105;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 41932084 rs284660 G T 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.40;AMR_AF=0.52;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.58;LDAF=0.4958;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41932120 rs284661 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.39;AMR_AF=0.51;AN=2;ASN_AF=0.46;AVGPOST=0.9955;ERATE=0.0026;EUR_AF=0.58;LDAF=0.4931;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41932275 rs284662 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9970;ERATE=0.0023;EUR_AF=0.59;LDAF=0.6115;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41932612 rs284663 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6099;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 41939297 rs1043413 C G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.60;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5027;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41944237 rs2231940 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3957;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41945837 rs13346603 T A 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.22;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4061;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 41945848 rs13344547 G T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4801;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42083849 rs714106 C A 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.13;AMR_AF=0.72;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5494;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 42085873 rs2302188 A G 100 PASS AA=g;AC=2;AF=0.63;AFR_AF=0.42;AMR_AF=0.76;AN=2;ASN_AF=0.58;AVGPOST=0.9990;ERATE=0.0007;EUR_AF=0.73;LDAF=0.6271;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 42125660 rs1041994 T C 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.99;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8721;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42132314 rs1126454 G C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.44;AMR_AF=0.47;AN=2;ASN_AF=0.87;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.56;LDAF=0.6004;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42221607 rs7249230 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=1.00;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8685;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 42265866 rs28547939 C G 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.73;AMR_AF=0.50;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.41;LDAF=0.5435;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 42265889 rs11548735 G T 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.74;AMR_AF=0.50;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5461;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 42312933 rs3752172 G A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.19;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.18;LDAF=0.1615;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 42375447 rs200093004 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42463447 rs735571 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.82;AVGPOST=0.9961;ERATE=0.0012;EUR_AF=0.67;LDAF=0.7311;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 42471050 rs919390 G C 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.80;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.67;LDAF=0.7370;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-2.66,-0.44,-0.20 +19 42489516 rs2217342 A C 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=0.88;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9139;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 42558629 rs3736109 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.10;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0878;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42603776 rs1205817 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.82;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.17;LDAF=0.3356;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42703833 rs2303652 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.19;AMR_AF=0.13;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1191;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42703950 rs149135613 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0083;RSQ=0.9661;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42713835 rs3745231 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.13;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1111;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42728836 rs3810151 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0759;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42736267 rs851609 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 42741124 rs2302485 A G 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.11;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0677;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42753034 rs35493131 A G 100 PASS AA=a;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9827;ERATE=0.0037;EUR_AF=0.08;LDAF=0.0977;RSQ=0.9229;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42753283 rs61735151 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0601;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42753649 rs11557114 G C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.11;AN=2;ASN_AF=0.04;AVGPOST=0.9970;ERATE=0.0018;EUR_AF=0.07;LDAF=0.0693;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42795554 rs10410185 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.11;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0739;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42848750 rs139484187 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0282;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42848764 rs874002 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.99;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9813;ERATE=0.0020;EUR_AF=0.59;LDAF=0.8109;RSQ=0.9577;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.33,-0.00 +19 42848815 rs1206044 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0952;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42853782 rs28621009 T C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.38;AMR_AF=0.15;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.06;LDAF=0.1431;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42857179 rs149155949 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0518;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.86,-0.06 +19 42858793 rs61995685 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0516;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42863035 rs1206038 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0960;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42880062 rs147216997 C T 100 PASS AA=c;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0082;RSQ=0.9021;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42893236 rs73556315 T C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.35;AMR_AF=0.16;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1490;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 42906273 rs35639038 C G 100 PASS AA=C;AC=2;AF=0.07;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9860;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0729;RSQ=0.9295;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:1.550:-5.00,-0.32,-0.29 +19 43013363 rs11666350 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.19;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1532;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43013394 rs10405906 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.54;AMR_AF=0.25;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2560;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43032561 rs8102519 G A 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.51;AMR_AF=0.23;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.10;LDAF=0.2130;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43087484 rs45476198 A C 100 PASS AA=a;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1266;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43233304 rs78863189 C A 100 PASS AA=N;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.06;LDAF=0.0447;RSQ=0.9744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43243217 rs12185496 A G 100 PASS AA=N;AC=2;AF=0.50;AFR_AF=0.70;AMR_AF=0.55;AN=2;ASN_AF=0.37;AVGPOST=0.9865;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5025;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.10,-0.00 +19 43243238 rs11559136 A G 100 PASS AA=N;AC=2;AF=0.56;AFR_AF=0.81;AMR_AF=0.57;AN=2;ASN_AF=0.39;AVGPOST=0.9765;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5597;RSQ=0.9716;SNPSOURCE=LOWCOV,EXOME;THETA=0.0114;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +19 43243248 rs12185500 G A 100 PASS AA=N;AC=2;AF=0.59;AFR_AF=0.85;AMR_AF=0.62;AN=2;ASN_AF=0.42;AVGPOST=0.9881;ERATE=0.0011;EUR_AF=0.55;LDAF=0.5938;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +19 43243251 rs12185501 G A 100 PASS AA=N;AC=1;AF=0.11;AFR_AF=0.29;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9943;ERATE=0.0005;EUR_AF=0.06;LDAF=0.1121;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43243266 rs12185499 C T 100 PASS AA=N;AC=1;AF=0.13;AFR_AF=0.32;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1271;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43259184 rs11879884 T G 100 PASS AA=N;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0605;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-1.66,-0.01,-5.00 +19 43268069 rs7255164 A G 100 PASS AA=g;AC=1;AF=0.15;AFR_AF=0.39;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1454;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43268216 rs7256456 T G 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0859;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43268235 rs75257969 A C 100 PASS AA=a;AC=1;AF=0.16;AFR_AF=0.43;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1550;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43420451 rs3198831 G C 100 PASS AA=N;AC=1;AF=0.39;AFR_AF=0.60;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9964;ERATE=0.0043;EUR_AF=0.26;LDAF=0.3878;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43519362 rs11083680 C T 100 PASS AA=t;AC=1;AF=0.66;AFR_AF=0.69;AMR_AF=0.51;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.47;LDAF=0.6642;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43519442 rs10414166 T C 100 PASS AA=c;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8413;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 43522911 rs9789252 A C 100 PASS AA=a;AC=1;AF=0.59;AFR_AF=0.39;AMR_AF=0.46;AN=2;ASN_AF=0.99;AVGPOST=0.9945;ERATE=0.0011;EUR_AF=0.47;LDAF=0.5846;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.71,-0.01,-5.00 +19 43575874 rs3746096 T C 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0868;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43575905 rs77035666 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0859;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 43579642 rs77796305 A G 100 PASS AA=N;AC=1;AF=0.23;AFR_AF=0.55;AMR_AF=0.21;AN=2;ASN_AF=0.06;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2333;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43579679 rs1058086 T A 100 PASS AA=N;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1053;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 43579815 rs144556615 G A 100 PASS AA=N;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0857;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.45,-2.22 +19 43584987 rs56806329 A G 100 PASS AA=N;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.16;AN=2;ASN_AF=0.0035;AVGPOST=0.9945;ERATE=0.0005;EUR_AF=0.11;LDAF=0.0790;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.03,-1.17,-5.00 +19 43585111 rs149579909 C G 100 PASS AA=N;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.0035;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0746;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.21,-0.02,-1.54 +19 43585325 rs7248878 G A 100 PASS AA=N;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0836;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-3.34 +19 43585404 rs7248679 A T 100 PASS AA=N;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0852;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 43585428 rs117031798 T C 100 PASS AA=N;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0759;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 43586617 rs1806848 T G 100 PASS AA=g;AC=2;AF=0.28;AFR_AF=0.51;AMR_AF=0.32;AN=2;ASN_AF=0.14;AVGPOST=0.9590;ERATE=0.0145;EUR_AF=0.23;LDAF=0.2802;RSQ=0.9371;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.800:-3.06,-0.47,-0.18 +19 43586664 rs3887660 C G 100 PASS AA=g;AC=2;AF=0.29;AFR_AF=0.51;AMR_AF=0.33;AN=2;ASN_AF=0.13;AVGPOST=0.9654;ERATE=0.0135;EUR_AF=0.24;LDAF=0.2882;RSQ=0.9502;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +19 43679410 rs1058467 A G 100 PASS AA=g;AC=1;AF=0.69;AFR_AF=0.75;AMR_AF=0.52;AN=2;ASN_AF=0.94;AVGPOST=0.9608;ERATE=0.0116;EUR_AF=0.54;LDAF=0.6824;RSQ=0.9476;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +19 43680051 rs1058285 C T 100 PASS AA=c;AC=1;AF=0.76;AFR_AF=0.84;AMR_AF=0.57;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=0.61;LDAF=0.7547;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43680147 rs17856402 C T 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.56;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2915;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-1.82,-0.01,-5.00 +19 43689004 rs2302112 G A 100 PASS AA=N;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.55;AVGPOST=0.9970;ERATE=0.0012;EUR_AF=0.16;LDAF=0.2876;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 43690506 rs8107936 G C 100 PASS AA=N;AC=1;AF=0.64;AFR_AF=0.59;AMR_AF=0.49;AN=2;ASN_AF=0.91;AVGPOST=0.9782;ERATE=0.0261;EUR_AF=0.54;LDAF=0.6365;RSQ=0.9701;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43699336 rs1058718 T C 100 PASS AA=c;AC=1;AF=0.69;AFR_AF=0.76;AMR_AF=0.55;AN=2;ASN_AF=0.88;AVGPOST=0.9599;ERATE=0.0142;EUR_AF=0.55;LDAF=0.6832;RSQ=0.9462;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.900:-0.10,-0.69,-4.70 +19 43699417 rs3859474 A G 100 PASS AA=g;AC=1;AF=0.64;AFR_AF=0.81;AMR_AF=0.48;AN=2;ASN_AF=0.94;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.37;LDAF=0.6345;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-1.69,-0.01,-5.00 +19 43702342 rs9789333 C T 100 PASS AA=c;AC=1;AF=0.40;AFR_AF=0.28;AMR_AF=0.32;AN=2;ASN_AF=0.78;AVGPOST=0.9791;ERATE=0.0004;EUR_AF=0.23;LDAF=0.4066;RSQ=0.9764;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43709619 rs34341467 C T 100 PASS AA=-;AC=1;AF=0.57;AFR_AF=0.55;AMR_AF=0.47;AN=2;ASN_AF=0.66;AVGPOST=0.9638;ERATE=0.0050;EUR_AF=0.56;LDAF=0.5702;RSQ=0.9485;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.62 +19 43709637 rs141508635 C G 100 PASS AA=-;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=0.9808;ERATE=0.0029;EUR_AF=0.13;LDAF=0.1019;RSQ=0.9322;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:0.750:-0.05,-0.95,-5.00 +19 43709647 rs12985206 G A 100 PASS AA=-;AC=1;AF=0.57;AFR_AF=0.55;AMR_AF=0.46;AN=2;ASN_AF=0.67;AVGPOST=0.9661;ERATE=0.0040;EUR_AF=0.56;LDAF=0.5692;RSQ=0.9525;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.24,-0.37 +19 43709654 rs11883277 C A 100 PASS AA=-;AC=2;AF=0.84;AFR_AF=0.72;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9617;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8399;RSQ=0.9047;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:1.850:-4.70,-0.39,-0.22 +19 43709656 rs11883278 C G 100 PASS AA=-;AC=2;AF=0.83;AFR_AF=0.71;AMR_AF=0.85;AN=2;ASN_AF=0.80;AVGPOST=0.9616;ERATE=0.0007;EUR_AF=0.93;LDAF=0.8369;RSQ=0.9044;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.800:-4.40,-0.20,-0.44 +19 43762316 rs2072284 A C 100 PASS AA=N;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9843;ERATE=0.0005;EUR_AF=0.05;LDAF=0.0545;RSQ=0.8975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.22,-0.00,-3.40 +19 43763144 rs2355447 C T 100 PASS AA=N;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.04;AVGPOST=0.9844;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0398;RSQ=0.8704;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 43969757 rs2259013 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.72;AMR_AF=0.40;AN=2;ASN_AF=0.33;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4997;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 43979589 rs1055099 G T 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.64;AMR_AF=0.49;AN=2;ASN_AF=0.68;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=0.43;LDAF=0.5530;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 43999634 rs1125030 A C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.76;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6359;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44001379 rs11083711 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0759;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44012880 rs2682578 A G 100 PASS AA=a;AC=2;AF=0.74;AFR_AF=0.90;AMR_AF=0.68;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.67;LDAF=0.7426;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +19 44031324 rs3810381 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.19;AMR_AF=0.11;AN=2;ASN_AF=0.13;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.21;LDAF=0.1672;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.78 +19 44047550 rs3547 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7056;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44047826 rs2682557 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44050195 rs25479 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.37;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2943;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44055726 rs25487 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.88;AMR_AF=0.69;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.65;LDAF=0.7356;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44057227 rs915927 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3167;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +19 44118353 rs2302421 G A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1860;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44128437 rs2240633 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.36;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3026;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44130453 rs3746003 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1856;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44131297 rs407049 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44156472 rs2302524 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.25;AMR_AF=0.24;AN=2;ASN_AF=0.08;AVGPOST=0.9988;ERATE=0.0026;EUR_AF=0.14;LDAF=0.1667;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44278779 rs649540 T G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.60;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9346;ERATE=0.0011;EUR_AF=0.16;LDAF=0.2770;RSQ=0.8967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.23,-0.39 +19 44278781 rs563995 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.61;AMR_AF=0.27;AN=2;ASN_AF=0.16;AVGPOST=0.9358;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3011;RSQ=0.9031;SNPSOURCE=LOWCOV,EXOME;THETA=0.0141;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.74 +19 44280837 rs514328 G A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.70;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=0.9897;ERATE=0.0068;EUR_AF=0.87;LDAF=0.8291;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0307;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44302624 rs349053 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.52;AMR_AF=0.40;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3809;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44303066 rs11547806 C G 100 PASS AA=c;AC=2;AF=0.57;AFR_AF=0.56;AMR_AF=0.66;AN=2;ASN_AF=0.53;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5709;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +19 44351107 rs10421861 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.43;AMR_AF=0.35;AN=2;ASN_AF=0.46;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4166;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44351694 rs2195980 C T 100 PASS AA=c;AC=1;AF=0.79;AFR_AF=0.96;AMR_AF=0.70;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.7893;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44351836 rs957569 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.85;AMR_AF=0.58;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.78;LDAF=0.6558;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44352665 rs2356437 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.79;AMR_AF=0.57;AN=2;ASN_AF=0.33;AVGPOST=0.9926;ERATE=0.0105;EUR_AF=0.73;LDAF=0.6135;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44352666 rs75949548 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.31;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=0.9915;ERATE=0.0293;EUR_AF=0.31;LDAF=0.2734;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44352688 rs2883946 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.42;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3492;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44417575 rs417699 A G 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5891;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44418077 rs407731 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.38;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5740;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44418343 rs406968 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5745;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44418544 rs425221 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5744;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44418680 rs388685 G C 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4661;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44418693 rs388706 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5744;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44418824 rs399098 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4661;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44419030 rs420242 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9949;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44422982 rs423320 G A 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5745;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 44470189 rs454301 T A 100 PASS AA=t;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9497;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44470420 rs439676 T C 100 PASS AA=t;AC=2;AF=0.88;AFR_AF=0.59;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.96;LDAF=0.8802;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44470548 rs453640 A G 100 PASS AA=N;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9593;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44470663 rs435590 G C 100 PASS AA=N;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9574;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44471209 rs365745 T A 100 PASS AA=t;AC=2;AF=0.77;AFR_AF=0.54;AMR_AF=0.83;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.84;LDAF=0.7705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44471323 rs366111 G A 100 PASS AA=N;AC=2;AF=0.85;AFR_AF=0.78;AMR_AF=0.87;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8474;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44496070 rs431509 A G 100 PASS AA=a;AC=2;AF=0.44;AFR_AF=0.56;AMR_AF=0.44;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.4374;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44500478 rs398235 A T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9804;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0102;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44500761 rs448921 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.67;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9146;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44501116 rs388812 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9188;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44501227 rs388471 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9159;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44501518 rs446016 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.36;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0029;EUR_AF=0.26;LDAF=0.3954;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44501627 rs35292176 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.30;AMR_AF=0.50;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5160;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44511202 rs2356549 A T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.55;AMR_AF=0.46;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.5370;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44511223 rs424147 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9780;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44515074 rs76261208 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0526;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44515352 rs1060880 T G 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.27;AMR_AF=0.29;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2176;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44515514 rs12753 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.26;AMR_AF=0.29;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2171;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44535999 rs7258517 G T 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.14;AMR_AF=0.42;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.4346;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44564981 rs3826941 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.70;AMR_AF=0.78;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.7385;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44570393 rs6509138 C A 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4154;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44570551 rs4375771 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.83;AMR_AF=0.79;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.7715;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44571154 rs4433920 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.14;AMR_AF=0.42;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.69;LDAF=0.4277;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44585159 rs4803674 T A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.7583;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44590558 rs7255701 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4474;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44604914 rs62115526 T C 100 PASS AA=t;AC=1;AF=0.58;AFR_AF=0.30;AMR_AF=0.58;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.79;LDAF=0.5791;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44605123 rs4803676 G A 100 PASS AA=a;AC=2;AF=0.80;AFR_AF=0.92;AMR_AF=0.81;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8040;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44610504 rs7250439 C G 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.23;AMR_AF=0.15;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1047;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44610665 rs2068061 A G 100 PASS AA=N;AC=2;AF=0.79;AFR_AF=0.88;AMR_AF=0.81;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0035;EUR_AF=0.87;LDAF=0.7893;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44610798 rs4239529 A T 100 PASS AA=t;AC=2;AF=0.80;AFR_AF=0.89;AMR_AF=0.80;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.7980;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44611066 rs7508149 T C 100 PASS AA=t;AC=1;AF=0.68;AFR_AF=0.62;AMR_AF=0.63;AN=2;ASN_AF=0.53;AVGPOST=0.9982;ERATE=0.0008;EUR_AF=0.85;LDAF=0.6776;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44611162 rs13346417 G T 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.27;AMR_AF=0.17;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1161;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44611420 rs4508518 A G 100 PASS AA=N;AC=1;AF=0.67;AFR_AF=0.67;AMR_AF=0.63;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.80;LDAF=0.6722;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44611957 rs3746322 T C 100 PASS AA=t;AC=1;AF=0.16;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0051;EUR_AF=0.11;LDAF=0.1622;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44612005 rs3746321 A G 100 PASS AA=a;AC=1;AF=0.62;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.80;LDAF=0.6167;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44612014 rs3200505 A T 100 PASS AA=a;AC=1;AF=0.62;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.54;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.80;LDAF=0.6163;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44612231 rs3746319 A G 100 PASS AA=a;AC=1;AF=0.63;AFR_AF=0.52;AMR_AF=0.60;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.6344;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44636802 rs16978738 A T 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0672;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44660967 rs12609635 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.90;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5431;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44680489 rs2178342 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.41;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1536;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44732658 rs922063 C G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.52;AMR_AF=0.21;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.1856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44739303 rs2279073 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.15;AMR_AF=0.44;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.4118;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44739399 rs2279072 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.73;AMR_AF=0.66;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.6111;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44740602 rs3810137 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.41;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1531;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44778405 rs1233428 A C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7436;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44792701 rs2125579 T G 100 PASS AA=t;AC=1;AF=0.44;AFR_AF=0.17;AMR_AF=0.44;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.4378;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44792969 rs2609908 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.82;AMR_AF=0.77;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7432;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44831989 rs2609881 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.43;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.2345;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44832684 rs2609880 T G 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6453;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44832875 rs2722722 A G 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6449;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44832992 rs2722723 C G 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6454;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44833506 rs4325673 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.78;AMR_AF=0.77;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7345;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44833851 rs4280359 G C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.85;AMR_AF=0.77;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7509;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44840789 rs2571104 T C 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6449;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 44890697 rs1836280 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.53;AVGPOST=0.9774;ERATE=0.0149;EUR_AF=0.63;LDAF=0.4957;RSQ=0.9677;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44891784 rs2571089 T C 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.61;AMR_AF=0.71;AN=2;ASN_AF=0.71;AVGPOST=0.9955;ERATE=0.0006;EUR_AF=0.91;LDAF=0.7566;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44933504 rs59505617 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.27;AN=2;ASN_AF=0.14;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1628;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44933706 rs57014690 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1660;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44934489 rs2571174 G A 100 PASS AA=a;AC=1;AF=0.86;AFR_AF=0.98;AMR_AF=0.94;AN=2;ASN_AF=0.67;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8620;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44934653 rs8113370 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1682;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 44981318 rs954313 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1257;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44981525 rs2020083 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1576;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44981883 rs1897820 C G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.56;AMR_AF=0.33;AN=2;ASN_AF=0.45;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.45;LDAF=0.4551;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 44983567 rs2253563 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.59;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4771;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45001346 rs2571108 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3041;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45162038 rs203710 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9877;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45179567 rs78626419 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0453;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45185810 rs116354108 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.14;AMR_AF=0.03;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0436;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45377334 rs393584 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.44;AMR_AF=0.38;AN=2;ASN_AF=0.73;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.31;LDAF=0.4594;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +19 45389224 rs283814 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9604;RSQ=0.9764;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45448036 rs1132899 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.77;AMR_AF=0.69;AN=2;ASN_AF=0.73;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6559;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +19 45476422 rs204481 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.83;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9140;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45488434 rs204472 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.83;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9136;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +19 45488567 rs204471 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.83;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9136;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45490636 rs204468 T C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.39;AVGPOST=0.9966;ERATE=0.0016;EUR_AF=0.61;LDAF=0.4569;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45561063 rs4803794 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45716364 rs189063316 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0079;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.06 +19 45769575 rs2240672 G A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.28;AMR_AF=0.24;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2376;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 45801018 rs173179 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9964;RSQ=0.8888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +19 45810035 rs4884 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.82;AMR_AF=0.51;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5765;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 45818835 rs1133190 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.31;AMR_AF=0.35;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4168;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 45856468 rs238417 G C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.89;AMR_AF=0.54;AN=2;ASN_AF=0.51;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.61;LDAF=0.6371;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45868309 rs238406 T G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.92;AMR_AF=0.49;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.57;LDAF=0.6219;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45872036 rs1799783 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.92;AMR_AF=0.49;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6208;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.08,-0.00 +19 45872144 rs2298860 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0141;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45909934 rs967591 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.45;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2465;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-1.50,-0.01,-5.00 +19 45910003 rs8113779 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.45;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2469;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.09,-0.71,-5.00 +19 45912002 rs735482 A C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.27;AMR_AF=0.20;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2609;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45912343 rs762562 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.27;AMR_AF=0.20;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2610;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45912406 rs2336219 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.25;AMR_AF=0.19;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2573;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45912599 rs201278532 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45912736 rs3212986 C A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.31;AMR_AF=0.35;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2929;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +19 45922323 rs3212961 G T 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.25;AMR_AF=0.20;AN=2;ASN_AF=0.48;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.13;LDAF=0.2628;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.850:-5.00,-0.91,-0.06 +19 45923653 rs11615 A G 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.96;AMR_AF=0.58;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.6378;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 45971961 rs2282695 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.60;AMR_AF=0.21;AN=2;ASN_AF=0.28;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3646;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45974593 rs2276469 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.76;AMR_AF=0.48;AN=2;ASN_AF=0.64;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5878;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 45992075 rs3745822 A G 100 PASS AA=A;AC=1;AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0266;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46025388 rs2301284 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.23;AMR_AF=0.35;AN=2;ASN_AF=0.27;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3191;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 46057081 rs3826860 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.78;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.67;LDAF=0.7666;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46124517 rs3816045 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0504;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46129999 rs1545040 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.21;AMR_AF=0.07;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1115;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46142053 rs7252448 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2377;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46185217 rs12709891 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.42;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2679;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.90 +19 46191021 rs2075142 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.14;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2687;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46205050 rs4803848 T C 100 PASS AA=c;AC=2;AF=0.72;AFR_AF=0.93;AMR_AF=0.56;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.61;LDAF=0.7229;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 46206262 rs17850756 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2245;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46268902 rs2341097 C T 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.30;AMR_AF=0.28;AN=2;ASN_AF=0.24;AVGPOST=0.9964;ERATE=0.0043;EUR_AF=0.33;LDAF=0.2910;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46269076 rs2014576 G A 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.35;AMR_AF=0.58;AN=2;ASN_AF=0.67;AVGPOST=0.9949;ERATE=0.0032;EUR_AF=0.46;LDAF=0.5136;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46269313 rs2014377 G C 100 PASS AA=c;AC=2;AF=0.89;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=0.9978;ERATE=0.0011;EUR_AF=0.80;LDAF=0.8914;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +19 46274972 rs915915 A C 100 PASS AA=c;AC=1;AF=0.57;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5710;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46275976 rs527221 G C 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1226;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46276056 rs16939 C A 100 PASS AA=c;AC=1;AF=0.55;AFR_AF=0.46;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0015;EUR_AF=0.47;LDAF=0.5472;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46281745 rs1799894 A G 100 PASS AA=g;AC=1;AF=0.60;AFR_AF=0.68;AMR_AF=0.64;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5992;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46282503 rs572634 A C 100 PASS AA=a;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0972;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46289392 rs8110017 G C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.94;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9773;ERATE=0.0025;EUR_AF=0.79;LDAF=0.8719;RSQ=0.9276;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.60,-0.00 +19 46289503 rs8109951 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2888;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46294136 rs72626215 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2009;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46313825 rs10407137 A T 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.86;AMR_AF=0.76;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7897;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46318963 rs3810331 C A 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=0.91;AVGPOST=0.9966;ERATE=0.0027;EUR_AF=0.88;LDAF=0.8800;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-4.40 +19 46319415 rs1132645 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.27;AMR_AF=0.27;AN=2;ASN_AF=0.63;AVGPOST=0.9387;ERATE=0.0293;EUR_AF=0.33;LDAF=0.3894;RSQ=0.9130;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46320041 rs74821481 G T 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.23;AVGPOST=0.9919;ERATE=0.0020;EUR_AF=0.32;LDAF=0.2804;RSQ=0.9829;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.70 +19 46327166 rs11671524 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2842;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46329438 rs7246155 G A 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.88;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8616;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46332194 rs3745929 C T 100 PASS AA=C;AC=1;AF=0.86;AFR_AF=0.88;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8615;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46333349 rs138091080 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0076;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46338492 rs7256192 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2856;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46341824 rs17850110 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1385;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46350960 rs3745928 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.21;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1376;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46352122 rs2303014 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1161;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46367703 rs11667582 T C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=0.9968;ERATE=0.0007;EUR_AF=0.16;LDAF=0.1382;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.66 +19 46404579 rs10423899 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=0.9947;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8573;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +19 46443739 rs28742045 T G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.77;AMR_AF=0.58;AN=2;ASN_AF=0.80;AVGPOST=0.9889;ERATE=0.0008;EUR_AF=0.70;LDAF=0.7204;RSQ=0.9798;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +19 46443886 rs1047061 C A 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.67;AMR_AF=0.53;AN=2;ASN_AF=0.80;AVGPOST=0.9891;ERATE=0.0008;EUR_AF=0.66;LDAF=0.6784;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.97,-0.05 +19 46498353 rs892217 C G 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.41;AMR_AF=0.37;AN=2;ASN_AF=0.34;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4173;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46506781 rs10412427 T C 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.18;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1264;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46506809 rs10416563 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0967;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46511548 rs2287305 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.93;AN=2;ASN_AF=0.89;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9346;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 46520026 rs2287306 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.83;AMR_AF=0.81;AN=2;ASN_AF=0.63;AVGPOST=0.9880;ERATE=0.0012;EUR_AF=0.76;LDAF=0.7467;RSQ=0.9755;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.43,-0.02,-5.00 +19 46526298 rs2072562 T G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.60;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.9930;ERATE=0.0010;EUR_AF=0.32;LDAF=0.4951;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.12 +19 46627592 rs2287307 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.28;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9976;ERATE=0.0085;EUR_AF=0.54;LDAF=0.3963;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46811984 rs2311054 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.61;AMR_AF=0.75;AN=2;ASN_AF=0.78;AVGPOST=0.9947;ERATE=0.0011;EUR_AF=0.87;LDAF=0.7671;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46815499 rs8101480 T C 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.81;AMR_AF=0.84;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8702;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46856963 rs917947 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.26;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2093;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46857015 rs917948 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.26;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2093;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 46857257 rs41275764 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.29;LDAF=0.1624;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 46878989 rs4239538 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=0.9982;ERATE=0.0008;EUR_AF=0.30;LDAF=0.1750;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.66,-4.70 +19 46887007 rs1024781 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9812;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 46972967 rs2288916 G C 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.22;AMR_AF=0.51;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4077;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 46974307 rs3826852 C T 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7377;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47177913 rs314665 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47193850 rs314671 T C 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7449;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47225377 rs117755928 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0103;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 47236268 rs11666600 G C 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.35;AMR_AF=0.45;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0018;EUR_AF=0.31;LDAF=0.3388;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47282162 rs2070246 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.48;AMR_AF=0.40;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0019;EUR_AF=0.21;LDAF=0.3186;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47342867 rs312185 A C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.67;AMR_AF=0.63;AN=2;ASN_AF=0.57;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.39;LDAF=0.5386;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 47543774 rs3745615 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.37;AMR_AF=0.63;AN=2;ASN_AF=0.70;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6222;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.85,-0.01 +19 47548678 rs889169 G A 100 PASS AA=g;AC=2;AF=0.51;AFR_AF=0.16;AMR_AF=0.49;AN=2;ASN_AF=0.67;AVGPOST=0.9855;ERATE=0.0013;EUR_AF=0.62;LDAF=0.5080;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.99,-0.00 +19 47571119 rs200248556 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.91 +19 47585517 rs7250850 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.10;AMR_AF=0.53;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.69;LDAF=0.4174;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 47588325 rs2287842 G A 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2193;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 47761646 rs12985905 G C 100 PASS AA=N;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.82;LDAF=0.9122;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47763573 rs45591932 C T 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.35;AMR_AF=0.37;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4158;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.92 +19 47768128 rs2032811 G C 100 PASS AA=.;AC=1;AF=0.60;AFR_AF=0.80;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9755;ERATE=0.0039;EUR_AF=0.45;LDAF=0.5979;RSQ=0.9628;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.050:-3.25,-0.28,-0.32 +19 47769839 rs9304666 A G 100 PASS AA=.;AC=1;AF=0.53;AFR_AF=0.48;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.9981;ERATE=0.0006;EUR_AF=0.45;LDAF=0.5267;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +19 47770015 rs10413121 A C 100 PASS AA=.;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.9762;ERATE=0.0269;EUR_AF=0.47;LDAF=0.5172;RSQ=0.9621;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.07 +19 47773786 rs888838 A G 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.39;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5068;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 47773973 rs888837 T C 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.39;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.45;LDAF=0.5063;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.57 +19 47774329 rs73570553 T C 100 PASS AA=.;AC=1;AF=0.42;AFR_AF=0.35;AMR_AF=0.38;AN=2;ASN_AF=0.57;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4218;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +19 47774447 rs66726054 G A 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.39;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5067;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 47774572 rs60930438 C T 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.9971;ERATE=0.0009;EUR_AF=0.45;LDAF=0.5041;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 47774772 rs888836 T C 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.39;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5062;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 47813165 rs11670330 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.44;AMR_AF=0.35;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3871;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47823038 rs4467185 G A 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.94;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47823484 rs4804049 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47823871 rs11880097 G T 100 PASS AA=g;AC=2;AF=0.97;AFR_AF=0.94;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 47878858 rs61751860 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.14;LDAF=0.0952;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 47879292 rs144080741 G A 100 PASS AA=G;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0004;LDAF=0.0025;RSQ=0.9230;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 47883086 rs28522883 T G 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0923;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 47912323 rs2272294 T G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.30;AMR_AF=0.31;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0020;EUR_AF=0.29;LDAF=0.2501;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 47978671 rs2272295 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.22;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1759;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 47980153 rs2293424 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.03;AMR_AF=0.38;AN=2;ASN_AF=0.56;AVGPOST=0.9872;ERATE=0.0008;EUR_AF=0.52;LDAF=0.3966;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.30,-0.00,-5.00 +19 48184474 rs3745762 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.48;AMR_AF=0.27;AN=2;ASN_AF=0.29;AVGPOST=0.9911;ERATE=0.0010;EUR_AF=0.25;LDAF=0.3170;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.89,-0.06 +19 48184547 rs889337 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.28;AMR_AF=0.47;AN=2;ASN_AF=0.66;AVGPOST=0.9970;ERATE=0.0007;EUR_AF=0.48;LDAF=0.4820;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.62,-0.00,-5.00 +19 48198675 rs13346368 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.30;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9964;ERATE=0.0015;EUR_AF=0.26;LDAF=0.2744;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 48244194 rs7255434 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.16;AMR_AF=0.57;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5160;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48244569 rs3745758 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.16;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4619;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48250320 rs2334293 G C 100 PASS AA=N;AC=2;AF=0.53;AFR_AF=0.25;AMR_AF=0.57;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5320;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48253579 rs3745754 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.82;AMR_AF=0.69;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6837;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48254392 rs10402957 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5950;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.28,-0.00 +19 48255804 rs1042558 A G 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.14;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4473;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48258578 rs10405135 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.88;AMR_AF=0.69;AN=2;ASN_AF=0.55;AVGPOST=0.9901;ERATE=0.0008;EUR_AF=0.69;LDAF=0.6945;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-3.02,-0.47,-0.18 +19 48305319 rs191563892 C T 100 PASS AA=c;AC=1;AF=0.0027;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0005;LDAF=0.0028;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48389425 rs11083907 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48525507 rs2303690 G A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.66;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6915;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48543862 rs8105198 G A 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.66;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7987;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 48591898 rs11564555 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0418;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 48593591 rs3745741 G C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.35;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3126;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48598823 rs156631 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.77;AMR_AF=0.51;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.6174;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48601350 rs251685 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.61;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0053;EUR_AF=0.59;LDAF=0.6334;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48601454 rs251684 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.73;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0021;EUR_AF=0.58;LDAF=0.6607;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48601528 rs251683 G T 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.73;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.58;LDAF=0.6593;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48602948 rs2303744 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.40;AMR_AF=0.30;AN=2;ASN_AF=0.60;AVGPOST=0.9984;ERATE=0.0031;EUR_AF=0.18;LDAF=0.3606;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48621036 rs13436 C G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.54;AMR_AF=0.48;AN=2;ASN_AF=0.77;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5583;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48622427 rs20581 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.91;AMR_AF=0.61;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7239;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 48622483 rs156647 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.57;AMR_AF=0.49;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5666;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48624625 rs153023 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.77;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5453;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +19 48634319 rs392891 T A 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.57;AMR_AF=0.48;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5635;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48646883 rs2288878 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.83;AMR_AF=0.60;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7034;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48654553 rs20580 G T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.58;AMR_AF=0.49;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5585;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48660445 rs274862 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3674;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48664798 rs3730862 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3610;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48668795 rs3730849 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3588;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 48863386 rs438767 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.31;AMR_AF=0.65;AN=2;ASN_AF=0.64;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5515;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48923101 rs276709 C A 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.33;AMR_AF=0.45;AN=2;ASN_AF=0.61;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4525;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48945880 rs62130268 T C 100 PASS AA=c;AC=2;AF=0.75;AFR_AF=0.62;AMR_AF=0.82;AN=2;ASN_AF=0.67;AVGPOST=0.9553;ERATE=0.0044;EUR_AF=0.87;LDAF=0.7428;RSQ=0.9117;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-2.66,-0.44,-0.20 +19 48949286 rs1643487 G T 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.56;AMR_AF=0.80;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7348;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +19 48949766 rs929743 C G 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.45;AMR_AF=0.79;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6879;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 48954421 rs2302951 G A 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.15;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.15;LDAF=0.1881;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49096065 rs2302948 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.25;LDAF=0.1742;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49099955 rs3815691 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1528;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.04 +19 49102513 rs1052131 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=0.9985;ERATE=0.0010;EUR_AF=0.16;LDAF=0.1566;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-4.40 +19 49106995 rs3745728 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.34;AVGPOST=0.9643;ERATE=0.0012;EUR_AF=0.12;LDAF=0.1874;RSQ=0.9152;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.28,-0.39,-1.14 +19 49116134 rs2617800 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9799;ERATE=0.0006;EUR_AF=0.97;LDAF=0.9752;RSQ=0.6780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.59,-0.01 +19 49116359 rs447802 T C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.70;AMR_AF=0.44;AN=2;ASN_AF=0.68;AVGPOST=0.9726;ERATE=0.0047;EUR_AF=0.24;LDAF=0.4879;RSQ=0.9657;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +19 49116438 rs376524 A G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.35;AMR_AF=0.35;AN=2;ASN_AF=0.51;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.21;LDAF=0.3432;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.57,-0.00 +19 49116555 rs368654 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9718;ERATE=0.0007;EUR_AF=0.72;LDAF=0.8670;RSQ=0.9206;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +19 49132634 rs3745733 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.08;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0899;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49143025 rs2303147 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.74;AMR_AF=0.82;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.88;LDAF=0.7660;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49164952 rs281392 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.36;AMR_AF=0.53;AN=2;ASN_AF=0.53;AVGPOST=0.9846;ERATE=0.0015;EUR_AF=0.63;LDAF=0.5267;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.59,-0.00,-5.00 +19 49206603 rs281377 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.29;AMR_AF=0.51;AN=2;ASN_AF=0.84;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5399;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +19 49216926 rs281384 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9109;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49217261 rs281385 A G 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.80;AMR_AF=0.86;AN=2;ASN_AF=0.86;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8434;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49217305 rs281386 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.37;AMR_AF=0.48;AN=2;ASN_AF=0.83;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5072;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +19 49217605 rs281388 T G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.96;AMR_AF=0.90;AN=2;ASN_AF=0.86;AVGPOST=0.9941;ERATE=0.0009;EUR_AF=0.92;LDAF=0.9097;RSQ=0.9703;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-2.06,-0.00,-3.70 +19 49238852 rs78171781 G T 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.05;AVGPOST=0.9946;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0272;RSQ=0.9244;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-2.38,-0.01,-1.68 +19 49244219 rs2307018 C A 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.48;AN=2;ASN_AF=0.72;AVGPOST=0.9932;ERATE=0.0144;EUR_AF=0.36;LDAF=0.4415;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49244220 rs2307019 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.74;AVGPOST=0.9931;ERATE=0.0048;EUR_AF=0.37;LDAF=0.4612;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49247693 rs8108136 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.28;AMR_AF=0.54;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5265;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49247786 rs8108468 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.28;AMR_AF=0.54;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5264;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49254573 rs838137 T A 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.91;AMR_AF=0.53;AN=2;ASN_AF=0.73;AVGPOST=0.9976;ERATE=0.0017;EUR_AF=0.37;LDAF=0.6098;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +19 49259529 rs838133 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.74;AMR_AF=0.71;AN=2;ASN_AF=0.99;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.58;LDAF=0.7473;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49261368 rs739320 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9916;ERATE=0.0004;EUR_AF=0.64;LDAF=0.8257;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +19 49300605 rs526744 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.85;AMR_AF=0.79;AN=2;ASN_AF=0.57;AVGPOST=0.9981;ERATE=0.0006;EUR_AF=0.75;LDAF=0.7314;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +19 49339098 rs8110220 T C 100 PASS AA=-;AC=1;AF=0.30;AFR_AF=0.58;AMR_AF=0.32;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.26;LDAF=0.3047;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49340858 rs10407029 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.75;AMR_AF=0.35;AN=2;ASN_AF=0.14;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3558;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49364625 rs518822 C T 100 PASS AA=c;AC=1;AF=0.19;AFR_AF=0.38;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1851;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49368843 rs506425 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.83;AMR_AF=0.34;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3801;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49376582 rs564196 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.51;AMR_AF=0.23;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2280;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49377086 rs611251 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.53;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2344;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49377242 rs557806 G C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.71;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9991;ERATE=0.0058;EUR_AF=0.15;LDAF=0.2833;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0075;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49377319 rs610308 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.78;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.35;LDAF=0.3865;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49377436 rs556052 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.73;AMR_AF=0.34;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3684;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49378994 rs500079 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.58;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=0.9979;ERATE=0.0013;EUR_AF=0.28;LDAF=0.3398;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49379167 rs524 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.58;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3384;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49379182 rs527 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.58;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3376;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49391404 rs8112811 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.41;AMR_AF=0.20;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1934;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49399821 rs12461075 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.49;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2715;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49400634 rs7260579 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.37;AMR_AF=0.20;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1836;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49421966 rs2287836 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5914;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49422437 rs12460533 A T 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1111;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49424381 rs12979328 C A 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.07;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.72;LDAF=0.4566;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49438288 rs201753232 G A 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0019;RSQ=0.9882;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.01 +19 49438363 rs2270941 G A 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.75;AMR_AF=0.39;AN=2;ASN_AF=0.53;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4656;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +19 49442933 rs2270939 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.66;AMR_AF=0.26;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4122;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49445679 rs11669022 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2519;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49445774 rs10423255 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0595;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49445817 rs11666105 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.66;AMR_AF=0.26;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4126;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49447577 rs79545002 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0750;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49447713 rs3765148 G A 100 PASS AA=g;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49458262 rs4645881 C T 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.58;AMR_AF=0.79;AN=2;ASN_AF=0.85;AVGPOST=0.9879;ERATE=0.0015;EUR_AF=0.86;LDAF=0.7812;RSQ=0.9725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-4.22,-0.55,-0.14 +19 49459104 rs1805419 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.63;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6399;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49513273 rs1062708 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.19;AMR_AF=0.53;AN=2;ASN_AF=0.44;AVGPOST=0.9684;ERATE=0.0251;EUR_AF=0.52;LDAF=0.4279;RSQ=0.9541;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49513349 rs2287760 C G 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.62;AVGPOST=0.8987;ERATE=0.0816;EUR_AF=0.57;LDAF=0.5854;RSQ=0.8469;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 49514319 rs201529731 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0083;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +19 49519058 rs749776 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.74;AMR_AF=0.61;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.61;LDAF=0.5689;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 49519466 rs1056917 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.73;AMR_AF=0.62;AN=2;ASN_AF=0.34;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5752;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49519873 rs6521 G C 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.47;AMR_AF=0.57;AN=2;ASN_AF=0.33;AVGPOST=0.9871;ERATE=0.0061;EUR_AF=0.58;LDAF=0.4883;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49519997 rs4002462 A G 100 PASS AA=a;AC=2;AF=0.50;AFR_AF=0.68;AMR_AF=0.54;AN=2;ASN_AF=0.31;AVGPOST=0.9612;ERATE=0.0040;EUR_AF=0.50;LDAF=0.4978;RSQ=0.9494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +19 49520315 rs2387589 T C 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.43;AMR_AF=0.53;AN=2;ASN_AF=0.29;AVGPOST=0.9956;ERATE=0.0010;EUR_AF=0.50;LDAF=0.4338;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.67,-0.00 +19 49520372 rs3752210 A T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.93;AMR_AF=0.65;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6195;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49526119 rs4002463 T G 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.34;AVGPOST=0.9730;ERATE=0.0006;EUR_AF=0.62;LDAF=0.4818;RSQ=0.9586;SNPSOURCE=EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-3.58,-0.51,-0.16 +19 49526191 rs28571120 G A 100 PASS AA=g;AC=2;AF=0.37;AFR_AF=0.36;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=0.9742;ERATE=0.0034;EUR_AF=0.40;LDAF=0.3757;RSQ=0.9669;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.41,-0.02 +19 49526203 rs17852109 G C 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.33;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=0.9754;ERATE=0.0009;EUR_AF=0.40;LDAF=0.3668;RSQ=0.9675;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +19 49526478 rs201642784 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.41;AMR_AF=0.48;AN=2;ASN_AF=0.30;AVGPOST=0.7993;ERATE=0.0116;EUR_AF=0.43;LDAF=0.4069;RSQ=0.6892;SNPSOURCE=EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:1.650:-0.48,-0.48,-0.48 +19 49547446 rs12610392 G C 100 PASS AA=g;AC=2;AF=0.26;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=0.8967;ERATE=0.0545;EUR_AF=0.27;LDAF=0.2741;RSQ=0.7628;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:1.650:-2.74,-0.45,-0.19 +19 49632079 rs4802565 C A 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.90;AMR_AF=0.63;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5731;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49632230 rs35298280 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0497;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49632309 rs4802566 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.96;AMR_AF=0.66;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5978;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49640002 rs2303053 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.51;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4204;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49658209 rs3745297 A C 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.40;LDAF=0.3545;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49658367 rs3745298 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.56;AMR_AF=0.55;AN=2;ASN_AF=0.31;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4433;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49658390 rs3745299 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.65;AMR_AF=0.54;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0012;EUR_AF=0.41;LDAF=0.4538;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49661547 rs11882563 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.37;AMR_AF=0.26;AN=2;ASN_AF=0.23;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.13;LDAF=0.2309;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49794028 rs45549132 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.31;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2886;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 49812403 rs2278405 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2545;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49838891 rs354020 C A 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.63;AMR_AF=0.80;AN=2;ASN_AF=0.79;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.76;LDAF=0.7452;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49839015 rs354021 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8259;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 49840500 rs117893060 C A 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0277;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49845895 rs8108669 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.30;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.24;LDAF=0.2712;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49860521 rs80095365 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0124;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 49869051 rs2303759 T G 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.27;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2701;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49878115 rs1054770 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.24;LDAF=0.2683;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49878196 rs2288481 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2239;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49894152 rs7256629 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.42;AN=2;ASN_AF=0.51;AVGPOST=0.9981;ERATE=0.0007;EUR_AF=0.47;LDAF=0.4759;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49894217 rs7256984 G T 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.42;AN=2;ASN_AF=0.51;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4761;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49899076 rs10405154 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5006;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 49900877 rs9304688 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.62;AMR_AF=0.50;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5328;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49901318 rs10421748 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.62;AMR_AF=0.50;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5335;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49950298 rs13394 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.92;AMR_AF=0.66;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6744;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49950356 rs12443 C G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.89;AMR_AF=0.66;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6645;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49954803 rs2293013 C T 100 PASS AA=c;AC=1;AF=0.61;AFR_AF=0.64;AMR_AF=0.63;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6060;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49954807 rs2293012 T G 100 PASS AA=g;AC=1;AF=0.61;AFR_AF=0.64;AMR_AF=0.63;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6061;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 49956690 rs3760670 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.38;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3657;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.19 +19 49969310 rs2914668 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.89;AMR_AF=0.66;AN=2;ASN_AF=0.38;AVGPOST=0.9939;ERATE=0.0006;EUR_AF=0.73;LDAF=0.6635;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.71,-0.13,-0.58 +19 50028040 rs3810194 T C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.09;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.08;LDAF=0.1109;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50028731 rs111846329 T A 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50029221 rs112749285 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50059718 rs6509437 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.60;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=0.9941;ERATE=0.0043;EUR_AF=0.12;LDAF=0.2707;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 50086806 rs3745474 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2495;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50091798 rs2288920 G T 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2486;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +19 50097784 rs10414643 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.52;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9982;ERATE=0.0016;EUR_AF=0.22;LDAF=0.2939;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.01,-0.00,-5.00 +19 50097932 rs16981329 G C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.61;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9983;ERATE=0.0010;EUR_AF=0.22;LDAF=0.3121;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +19 50098423 rs12462756 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.46;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9955;ERATE=0.0005;EUR_AF=0.16;LDAF=0.2520;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.49 +19 50100295 rs3745475 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.61;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9930;ERATE=0.0005;EUR_AF=0.22;LDAF=0.3121;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.81,-0.45,-0.19 +19 50140068 rs1368464 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.78;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7662;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50140092 rs1865077 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.78;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7662;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50140209 rs1368463 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.77;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.70;LDAF=0.7649;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 50156896 rs10401743 T C 100 PASS AA=c;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9938;ERATE=0.0007;EUR_AF=0.93;LDAF=0.9624;RSQ=0.9333;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +19 50157946 rs2304208 T C 100 PASS AA=t;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0430;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50162909 rs7251 C G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.72;AMR_AF=0.42;AN=2;ASN_AF=0.38;AVGPOST=0.9977;ERATE=0.0042;EUR_AF=0.32;LDAF=0.4428;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50166795 rs3810260 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50183788 rs79863139 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0147;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50265230 rs1273634 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.74;AMR_AF=0.35;AN=2;ASN_AF=0.56;AVGPOST=0.9853;ERATE=0.0329;EUR_AF=0.29;LDAF=0.4731;RSQ=0.9803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0161;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50311997 rs201118677 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=0.9312;ERATE=0.0889;EUR_AF=0.14;LDAF=0.1530;RSQ=0.7632;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.04,-0.00,-5.00 +19 50358170 rs1290657 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.77;AMR_AF=0.76;AN=2;ASN_AF=0.78;AVGPOST=0.9967;ERATE=0.0027;EUR_AF=0.69;LDAF=0.7447;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.23,-0.00 +19 50381837 rs74421349 C G 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0400;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50383591 rs8109661 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50411742 rs892028 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9730;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50412217 rs79747934 C G 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.21;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3497;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 50412417 rs999583 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9940;ERATE=0.0032;EUR_AF=0.78;LDAF=0.8601;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50435747 rs283525 T C 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.74;AMR_AF=0.64;AN=2;ASN_AF=0.72;AVGPOST=0.9931;ERATE=0.0345;EUR_AF=0.63;LDAF=0.6791;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50435862 rs283526 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.78;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=0.9328;ERATE=0.0420;EUR_AF=0.49;LDAF=0.5965;RSQ=0.8988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +19 50436371 rs8667 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.14;AMR_AF=0.33;AN=2;ASN_AF=0.42;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3303;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.85,-0.01 +19 50463982 rs9676436 T G 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=0.9156;ERATE=0.0134;EUR_AF=0.31;LDAF=0.3204;RSQ=0.8494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:0.950:-0.19,-0.46,-2.44 +19 50484234 rs16981617 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9981;ERATE=0.0012;EUR_AF=0.06;LDAF=0.1696;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50492860 rs10424282 C G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.59;AMR_AF=0.43;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4950;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50735340 rs11666328 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.36;AVGPOST=0.9724;ERATE=0.0059;EUR_AF=0.35;LDAF=0.3257;RSQ=0.9546;SNPSOURCE=LOWCOV,EXOME;THETA=0.0251;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50750419 rs607227 C T 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.62;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7559;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.78,-0.00 +19 50762418 rs1651553 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.64;AMR_AF=0.78;AN=2;ASN_AF=0.86;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.78;LDAF=0.7704;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +19 50763889 rs12981413 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.45;AMR_AF=0.59;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4590;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 50764000 rs193123463 G T 100 PASS AA=G;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0003;LDAF=0.0041;RSQ=0.9259;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50766707 rs1529492 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.65;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7729;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.00,-0.05 +19 50771609 rs3745504 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.45;AMR_AF=0.66;AN=2;ASN_AF=0.41;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5236;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.95,-0.00 +19 50771635 rs930086 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.84;AMR_AF=0.89;AN=2;ASN_AF=0.89;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8766;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.33,-0.00 +19 50796905 rs3745509 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.35;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7074;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50796960 rs3745510 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.41;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0019;EUR_AF=0.76;LDAF=0.7203;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50805138 rs3826772 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.56;AMR_AF=0.79;AN=2;ASN_AF=0.75;AVGPOST=0.9888;ERATE=0.0050;EUR_AF=0.87;LDAF=0.7547;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 50812221 rs889002 A G 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.87;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=0.9975;ERATE=0.0013;EUR_AF=0.82;LDAF=0.8816;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +19 50863023 rs638294 A G 100 PASS AA=a;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.36;AN=2;ASN_AF=0.19;AVGPOST=0.9832;ERATE=0.0109;EUR_AF=0.31;LDAF=0.3078;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50865535 rs676314 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.58;AMR_AF=0.40;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3654;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50868754 rs1274517 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.58;AMR_AF=0.40;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3647;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50909389 rs1673041 T G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.92;AMR_AF=0.78;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6968;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50919797 rs3218776 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.33;AMR_AF=0.63;AN=2;ASN_AF=0.13;AVGPOST=0.9851;ERATE=0.0018;EUR_AF=0.70;LDAF=0.4592;RSQ=0.9811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-0.40,-0.22,-2.56 +19 50926264 rs1673030 T C 100 PASS AA=.;AC=1;AF=0.77;AFR_AF=0.92;AMR_AF=0.85;AN=2;ASN_AF=0.43;AVGPOST=0.9928;ERATE=0.0013;EUR_AF=0.90;LDAF=0.7713;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50938385 rs11669020 C A 100 PASS AA=.;AC=1;AF=0.32;AFR_AF=0.22;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.9919;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3202;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.15 +19 50939867 rs2004423 G A 100 PASS AA=.;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.29;AN=2;ASN_AF=0.37;AVGPOST=0.9952;ERATE=0.0028;EUR_AF=0.28;LDAF=0.2850;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50940778 rs61731791 C T 100 PASS AA=.;AC=1;AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0266;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50951689 rs2445835 A G 100 PASS AA=g;AC=1;AF=0.45;AFR_AF=0.65;AMR_AF=0.47;AN=2;ASN_AF=0.30;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4497;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50954584 rs8105250 C T 100 PASS AA=N;AC=1;AF=0.30;AFR_AF=0.27;AMR_AF=0.28;AN=2;ASN_AF=0.40;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2972;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50957397 rs25665 G A 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2406;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 50965272 rs25668 T C 100 PASS AA=c;AC=2;AF=0.76;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.71;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.68;LDAF=0.7623;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.08,-0.04 +19 50967640 rs25667 G A 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1549;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 50967686 rs34339443 G A 100 PASS AA=g;AC=1;AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0233;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 50983930 rs10409679 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.36;AMR_AF=0.59;AN=2;ASN_AF=0.56;AVGPOST=0.9964;ERATE=0.0008;EUR_AF=0.59;LDAF=0.5306;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.04,-0.00 +19 51015404 rs12977172 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=0.9930;ERATE=0.0014;EUR_AF=0.68;LDAF=0.7663;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +19 51128856 rs10426057 A C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.91;AMR_AF=0.79;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7062;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +19 51133356 rs10407511 C G 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.83;AMR_AF=0.70;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5804;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51140506 rs17849195 G A 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.23;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1381;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51170706 rs3745521 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=0.42;AVGPOST=0.9570;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7083;RSQ=0.9285;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|1:2.000:-1.78,-0.39,-0.24 +19 51171188 rs750578 G A 100 PASS AA=g;AC=2;AF=0.34;AFR_AF=0.05;AMR_AF=0.53;AN=2;ASN_AF=0.34;AVGPOST=0.9478;ERATE=0.0026;EUR_AF=0.44;LDAF=0.3434;RSQ=0.9171;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.66,-0.11 +19 51207700 rs147548184 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.11;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0216;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 51207775 rs41275786 C T 100 PASS AA=C;AC=2;AF=0.11;AFR_AF=0.01;AMR_AF=0.29;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1083;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51217550 rs3745530 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.45;AMR_AF=0.42;AN=2;ASN_AF=0.22;AVGPOST=0.9987;ERATE=0.0042;EUR_AF=0.46;LDAF=0.3896;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 51228746 rs13866 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.36;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.23;LDAF=0.2626;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.70 +19 51323232 rs5517 T C 100 PASS AA=N;AC=2;AF=0.36;AFR_AF=0.19;AMR_AF=0.42;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.28;LDAF=0.3620;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51323473 rs5516 C G 100 PASS AA=N;AC=2;AF=0.71;AFR_AF=0.59;AMR_AF=0.75;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7093;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51323501 rs1054713 A G 100 PASS AA=N;AC=2;AF=0.74;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7412;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51330932 rs3745522 G T 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.05;AMR_AF=0.39;AN=2;ASN_AF=0.49;AVGPOST=0.9982;ERATE=0.0016;EUR_AF=0.25;LDAF=0.2933;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51359453 rs2271095 T C 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3249;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51359497 rs11573 T C 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.19;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.42;LDAF=0.4003;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51359503 rs1135766 A G 100 PASS AA=a;AC=2;AF=0.40;AFR_AF=0.19;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3999;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51363398 rs1058205 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6764;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51411636 rs2569527 G T 100 PASS AA=t;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9985;RSQ=0.9360;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51412666 rs1654552 C A 100 PASS AA=c;AC=2;AF=0.27;AFR_AF=0.09;AMR_AF=0.41;AN=2;ASN_AF=0.09;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.46;LDAF=0.2725;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51447065 rs1701949 T C 100 PASS AA=N;AC=2;AF=0.78;AFR_AF=0.91;AMR_AF=0.72;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0023;EUR_AF=0.62;LDAF=0.7819;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +19 51452250 rs183854 T C 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51455814 rs2739412 A C 100 PASS AA=N;AC=2;AF=0.51;AFR_AF=0.51;AMR_AF=0.47;AN=2;ASN_AF=0.74;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.36;LDAF=0.5122;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51466516 rs1654537 A G 100 PASS AA=N;AC=1;AF=0.32;AFR_AF=0.32;AMR_AF=0.33;AN=2;ASN_AF=0.32;AVGPOST=0.9977;ERATE=0.0017;EUR_AF=0.32;LDAF=0.3202;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0163;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51484984 rs1991820 C T 100 PASS AA=c;AC=1;AF=0.43;AFR_AF=0.06;AMR_AF=0.54;AN=2;ASN_AF=0.45;AVGPOST=0.9945;ERATE=0.0004;EUR_AF=0.59;LDAF=0.4263;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +19 51484990 rs1991819 T C 100 PASS AA=c;AC=2;AF=0.52;AFR_AF=0.34;AMR_AF=0.64;AN=2;ASN_AF=0.47;AVGPOST=0.9948;ERATE=0.0004;EUR_AF=0.63;LDAF=0.5250;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.96,-0.05 +19 51485013 rs1991818 C T 100 PASS AA=c;AC=1;AF=0.44;AFR_AF=0.06;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4360;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-4.00 +19 51485194 rs1654523 C T 100 PASS AA=t;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.90;LDAF=0.9378;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51485622 rs2659067 A G 100 PASS AA=a;AC=2;AF=0.95;AFR_AF=0.95;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9483;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51503524 rs1701946 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.85;AMR_AF=0.53;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5314;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51507020 rs2075802 T G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.78;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4839;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51518222 rs2075696 G A 100 PASS AA=g;AC=1;AF=0.38;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3822;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51519114 rs2075691 C T 100 PASS AA=c;AC=1;AF=0.58;AFR_AF=0.70;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5800;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +19 51519236 rs2075690 A G 100 PASS AA=a;AC=1;AF=0.58;AFR_AF=0.71;AMR_AF=0.60;AN=2;ASN_AF=0.50;AVGPOST=0.9979;ERATE=0.0021;EUR_AF=0.55;LDAF=0.5833;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.68,-0.10 +19 51519259 rs2075689 C T 100 PASS AA=c;AC=1;AF=0.58;AFR_AF=0.72;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5818;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.92,-0.06 +19 51519346 rs1061368 G C 100 PASS AA=g;AC=1;AF=0.35;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3513;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51519364 rs2075688 T G 100 PASS AA=N;AC=1;AF=0.70;AFR_AF=0.95;AMR_AF=0.67;AN=2;ASN_AF=0.61;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6993;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51519451 rs2075687 T C 100 PASS AA=t;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.61;AN=2;ASN_AF=0.50;AVGPOST=0.9841;ERATE=0.0066;EUR_AF=0.56;LDAF=0.6014;RSQ=0.9759;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51520487 rs3745535 A C 100 PASS AA=N;AC=1;AF=0.71;AFR_AF=0.96;AMR_AF=0.68;AN=2;ASN_AF=0.62;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.62;LDAF=0.7070;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51522291 rs2304157 G C 100 PASS AA=c;AC=1;AF=0.69;AFR_AF=0.92;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=0.9949;ERATE=0.0005;EUR_AF=0.61;LDAF=0.6909;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.10,-0.70,-5.00 +19 51528890 rs2288892 C T 100 PASS AA=c;AC=1;AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9984;ERATE=0.0005;LDAF=0.0196;RSQ=0.9658;SNPSOURCE=LOWCOV,EXOME;THETA=0.0188;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51535130 rs3745540 A G 100 PASS AA=a;AC=1;AF=0.52;AFR_AF=0.34;AMR_AF=0.57;AN=2;ASN_AF=0.61;AVGPOST=0.9943;ERATE=0.0008;EUR_AF=0.55;LDAF=0.5209;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51602298 rs12983578 C G 100 PASS AA=.;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=0.9729;ERATE=0.0013;EUR_AF=0.18;LDAF=0.1053;RSQ=0.8874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.600:-0.18,-0.47,-2.52 +19 51628529 rs2075803 A G 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.58;LDAF=0.5059;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 51630482 rs2258983 C A 100 PASS AA=.;AC=1;AF=0.63;AFR_AF=0.88;AMR_AF=0.54;AN=2;ASN_AF=0.55;AVGPOST=0.9963;ERATE=0.0046;EUR_AF=0.58;LDAF=0.6336;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 51631165 rs867188 C A 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.26;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.33;LDAF=0.1726;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 51656454 rs273662 A T 100 PASS AA=.;AC=2;AF=0.73;AFR_AF=0.60;AMR_AF=0.75;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.94;LDAF=0.7323;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51728477 rs12459419 C T 100 PASS AA=.;AC=2;AF=0.24;AFR_AF=0.07;AMR_AF=0.42;AN=2;ASN_AF=0.18;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2388;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.54,-0.01 +19 51769145 rs10410689 T C 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.44;AMR_AF=0.32;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0013;EUR_AF=0.07;LDAF=0.2385;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51769154 rs10410697 T A 100 PASS AA=A;AC=2;AF=0.23;AFR_AF=0.41;AMR_AF=0.31;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2303;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51828595 rs60865738 C T 100 PASS AA=C;AC=2;AF=0.19;AFR_AF=0.11;AMR_AF=0.32;AN=2;ASN_AF=0.23;AVGPOST=0.9951;ERATE=0.0005;EUR_AF=0.15;LDAF=0.1904;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51883727 rs2547318 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.98;AMR_AF=0.71;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7806;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51890741 rs2547309 T C 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.63;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.16;LDAF=0.3340;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 51890745 rs2547308 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2101;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51920613 rs1010425 C T 100 PASS AA=.;AC=2;AF=0.86;AFR_AF=0.78;AMR_AF=0.88;AN=2;ASN_AF=0.88;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.88;LDAF=0.8565;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 51955626 rs36491 A G 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.16;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2454;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51957556 rs3829659 T C 100 PASS AA=.;AC=1;AF=0.33;AFR_AF=0.53;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9987;ERATE=0.0020;EUR_AF=0.29;LDAF=0.3315;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 51984725 rs8106673 T A 100 PASS AA=.;AC=1;AF=0.86;AFR_AF=0.94;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=0.9889;ERATE=0.0007;EUR_AF=0.76;LDAF=0.8549;RSQ=0.9679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52000624 rs3752135 T G 100 PASS AA=.;AC=2;AF=0.81;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.85;LDAF=0.8119;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52000672 rs3829658 G A 100 PASS AA=.;AC=2;AF=0.60;AFR_AF=0.57;AMR_AF=0.74;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.65;LDAF=0.6037;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52001485 rs11668530 G A 100 PASS AA=.;AC=1;AF=0.34;AFR_AF=0.08;AMR_AF=0.48;AN=2;ASN_AF=0.25;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.50;LDAF=0.3391;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52002488 rs968491 C A 100 PASS AA=.;AC=2;AF=0.80;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8030;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52002729 rs2009362 G A 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.54;AMR_AF=0.70;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5522;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52003331 rs6509544 G C 100 PASS AA=.;AC=2;AF=0.80;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8030;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52004551 rs3810109 C T 100 PASS AA=.;AC=1;AF=0.74;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7409;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52004743 rs3810110 G A 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.55;AMR_AF=0.70;AN=2;ASN_AF=0.37;AVGPOST=0.9964;ERATE=0.0041;EUR_AF=0.64;LDAF=0.5604;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52004747 rs2034891 G T 100 PASS AA=.;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.06;AN=2;ASN_AF=0.11;AVGPOST=0.9973;ERATE=0.0024;EUR_AF=0.03;LDAF=0.0618;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52032964 rs3976745 C G 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.62;AMR_AF=0.75;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6407;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52033158 rs35931837 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.20;AN=2;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.14;LDAF=0.0816;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-3.42,-0.00,-5.00 +19 52033206 rs2005199 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0690;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52033742 rs2305772 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.54;AMR_AF=0.66;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5585;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52034469 rs1993462 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1275;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52034940 rs1551559 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.55;AMR_AF=0.66;AN=2;ASN_AF=0.45;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5574;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-1.81,-0.01,-5.00 +19 52115645 rs3829655 G C 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.31;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4443;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52130488 rs17740650 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.16;AMR_AF=0.17;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2669;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52130788 rs8104955 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.23;AMR_AF=0.18;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1417;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52130830 rs8107754 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.39;AMR_AF=0.51;AN=2;ASN_AF=0.01;AVGPOST=0.9967;ERATE=0.0005;EUR_AF=0.47;LDAF=0.3382;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52130925 rs8108074 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.33;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1665;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52132325 rs2305372 A T 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1509;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52133060 rs2278833 G T 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.33;AMR_AF=0.26;AN=2;ASN_AF=0.85;AVGPOST=0.9196;ERATE=0.0293;EUR_AF=0.22;LDAF=0.4354;RSQ=0.9101;SNPSOURCE=LOWCOV,EXOME;THETA=0.0197;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.96,-0.00 +19 52217405 rs75977318 G A 100 PASS AA=g;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9960;ERATE=0.0006;EUR_AF=0.07;LDAF=0.0742;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0245;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.71 +19 52220351 rs11084111 G A 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.09;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2069;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52222552 rs11084112 G A 100 PASS AA=.;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.39;AN=2;ASN_AF=0.20;AVGPOST=0.9935;ERATE=0.0017;EUR_AF=0.32;LDAF=0.3283;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52223121 rs7248778 A G 100 PASS AA=.;AC=2;AF=0.81;AFR_AF=0.74;AMR_AF=0.77;AN=2;ASN_AF=0.99;AVGPOST=0.9941;ERATE=0.0009;EUR_AF=0.74;LDAF=0.8069;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +19 52223180 rs56166910 A G 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.26;AMR_AF=0.38;AN=2;ASN_AF=0.80;AVGPOST=0.9936;ERATE=0.0008;EUR_AF=0.42;LDAF=0.4796;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.02,-1.44 +19 52249211 rs867228 T G 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.80;AMR_AF=0.81;AN=2;ASN_AF=0.72;AVGPOST=0.9993;ERATE=0.0010;EUR_AF=0.78;LDAF=0.7740;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52249702 rs2070746 G T 100 PASS AA=.;AC=1;AF=0.36;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.48;AVGPOST=0.9985;ERATE=0.0012;EUR_AF=0.29;LDAF=0.3579;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0173;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52250216 rs5030878 A G 100 PASS AA=.;AC=2;AF=0.83;AFR_AF=0.77;AMR_AF=0.80;AN=2;ASN_AF=0.96;AVGPOST=0.9991;ERATE=0.0012;EUR_AF=0.78;LDAF=0.8266;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52506985 rs1433089 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2034;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52520607 rs61574510 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2545;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52521296 rs9636139 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.77;AMR_AF=0.41;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4799;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52537576 rs11666149 T G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.77;AMR_AF=0.44;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52620269 rs35582075 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0872;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 52852523 rs321953 T C 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.55;AMR_AF=0.73;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6859;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52856955 rs1961205 C T 100 PASS AA=c;AC=1;AF=0.37;AFR_AF=0.33;AMR_AF=0.34;AN=2;ASN_AF=0.42;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3738;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52869022 rs2241586 G T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7988;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52869278 rs321937 G C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.81;AMR_AF=0.83;AN=2;ASN_AF=0.61;AVGPOST=0.9994;ERATE=0.0048;EUR_AF=0.90;LDAF=0.7895;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0119;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52869312 rs162120 T C 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.82;AMR_AF=0.80;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0019;EUR_AF=0.89;LDAF=0.7604;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52869534 rs162119 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=0.60;AVGPOST=0.9989;ERATE=0.0052;EUR_AF=0.89;LDAF=0.7873;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52870052 rs1054612 C G 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.28;AMR_AF=0.38;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3354;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52887427 rs8104808 A C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.24;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3424;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52887437 rs8104812 A C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.24;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3419;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52887904 rs2042913 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.33;AMR_AF=0.39;AN=2;ASN_AF=0.30;AVGPOST=0.9971;ERATE=0.0046;EUR_AF=0.40;LDAF=0.3558;RSQ=0.9955;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 52909303 rs2290745 C T 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5261;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52938309 rs117305879 A G 100 PASS AA=A;AC=2;AF=0.03;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0275;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52938361 rs11084161 C A 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.80;AMR_AF=0.91;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8419;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52938417 rs11084162 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8496;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52941171 rs1428180 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.83;AMR_AF=0.92;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8500;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52941540 rs1366257 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.83;AMR_AF=0.92;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8501;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 52941618 rs1366258 A C 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.83;AMR_AF=0.92;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8501;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53057925 rs75830912 C A 100 PASS AA=.;AC=2;AF=0.08;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.24;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0799;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53117531 rs1056185 C T 100 PASS AA=N;AC=2;AF=0.73;AFR_AF=0.86;AMR_AF=0.71;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7249;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53117809 rs10406458 C A 100 PASS AA=c;AC=2;AF=0.72;AFR_AF=0.86;AMR_AF=0.71;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0016;EUR_AF=0.65;LDAF=0.7244;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 53270384 rs1820128 A G 100 PASS AA=.;AC=1;AF=0.77;AFR_AF=0.94;AMR_AF=0.76;AN=2;ASN_AF=0.59;AVGPOST=0.9786;ERATE=0.0204;EUR_AF=0.81;LDAF=0.7713;RSQ=0.9631;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 53344118 rs10419826 C G 100 PASS AA=-;AC=1;AF=0.45;AFR_AF=0.65;AMR_AF=0.53;AN=2;ASN_AF=0.34;AVGPOST=0.9820;ERATE=0.0309;EUR_AF=0.37;LDAF=0.4485;RSQ=0.9760;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-1.90,-0.01,-3.49 +19 53345321 rs8100893 T G 100 PASS AA=-;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.29;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1910;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53345414 rs8100996 T A 100 PASS AA=a;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.29;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1907;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53577419 rs8105668 G C 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.90;AMR_AF=0.77;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7610;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53612311 rs4803051 T C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53612745 rs1133327 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.51;AMR_AF=0.65;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5549;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53612757 rs1054485 T G 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.51;AMR_AF=0.65;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5549;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53645291 rs2195310 T C 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.39;AMR_AF=0.67;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6320;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53667804 rs4801958 C T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.14;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5096;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53667913 rs12459469 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.14;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5096;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53667940 rs12459471 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.14;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5096;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53668697 rs45499997 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.12;AN=2;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.05;LDAF=0.0374;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 53669273 rs4801959 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9429;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53669492 rs12460170 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.14;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5098;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53740822 rs8113436 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.75;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4756;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53741068 rs12984188 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.25;AMR_AF=0.44;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4750;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53741188 rs12984473 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.25;AMR_AF=0.44;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4749;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53762537 rs12609049 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1290;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53793042 rs8109165 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.69;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.51;LDAF=0.5459;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53793574 rs2865248 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.82;AMR_AF=0.56;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.52;LDAF=0.5822;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 53848812 rs111757330 G A 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0533;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53910912 rs2061773 G A 100 PASS AA=g;AC=2;AF=0.78;AFR_AF=0.74;AMR_AF=0.85;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7839;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 53911510 rs8182488 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2151;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 53911973 rs10425136 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.74;AMR_AF=0.85;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7827;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.10,-0.04 +19 53912242 rs10426347 G A 100 PASS AA=-;AC=2;AF=0.78;AFR_AF=0.74;AMR_AF=0.85;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7829;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +19 53990002 rs12974996 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.29;AVGPOST=0.9824;ERATE=0.0082;EUR_AF=0.43;LDAF=0.3538;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.100:-5.00,-0.90,-0.06 +19 53993764 rs12609217 A T 100 PASS AA=A;AC=1;AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.23;AVGPOST=0.9959;ERATE=0.0028;EUR_AF=0.0040;LDAF=0.0687;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54080144 rs8109631 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.91;AMR_AF=0.59;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7257;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54308554 rs4806773 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.79;AMR_AF=0.86;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8207;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54310961 rs2866112 G C 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.74;AMR_AF=0.85;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8076;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54312796 rs58572468 C G 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.57;AMR_AF=0.29;AN=2;ASN_AF=0.27;AVGPOST=0.9743;ERATE=0.0057;EUR_AF=0.25;LDAF=0.3323;RSQ=0.9570;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.15,-0.03 +19 54314585 rs6509827 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.96;AN=2;ASN_AF=0.86;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9309;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54327313 rs34436714 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.43;AMR_AF=0.24;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2449;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54385820 rs2547362 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.65;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=0.9978;ERATE=0.0018;EUR_AF=0.96;LDAF=0.8911;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54394965 rs3745406 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9994;ERATE=0.0030;EUR_AF=0.41;LDAF=0.3180;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54395098 rs3745405 G T 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.18;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3232;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54483203 rs145338051 C G 100 PASS AA=.;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0005;LDAF=0.0055;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54501527 rs34604090 G A 100 PASS AA=.;AC=1;AF=0.07;AFR_AF=0.17;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54600232 rs1657535 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.87;AMR_AF=0.92;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.98;LDAF=0.8725;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54606209 rs254260 T G 100 PASS AA=t;AC=2;AF=0.91;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9126;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54606405 rs254259 T C 100 PASS AA=t;AC=1;AF=0.53;AFR_AF=0.62;AMR_AF=0.43;AN=2;ASN_AF=0.47;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5279;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54611614 rs73936706 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54625853 rs56396916 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.18;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0037;LDAF=0.0443;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54626007 rs150517943 C T 100 PASS AA=c;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0160;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54627097 rs2303557 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.75;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9171;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 54632423 rs655240 T C 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.70;AMR_AF=0.74;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7694;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +19 54649671 rs36665 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9945;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54652203 rs43211 T C 100 PASS AA=c;AC=1;AF=0.71;AFR_AF=0.76;AMR_AF=0.69;AN=2;ASN_AF=0.56;AVGPOST=0.9821;ERATE=0.0032;EUR_AF=0.79;LDAF=0.7087;RSQ=0.9669;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.10 +19 54659014 rs200681035 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54664209 rs36657 G C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.60;AMR_AF=0.48;AN=2;ASN_AF=0.24;AVGPOST=0.9973;ERATE=0.0008;EUR_AF=0.53;LDAF=0.4611;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54664752 rs36656 A C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.40;AMR_AF=0.44;AN=2;ASN_AF=0.20;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.52;LDAF=0.3958;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54666060 rs12978996 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.46;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9910;ERATE=0.0008;EUR_AF=0.35;LDAF=0.3683;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.59,-0.01,-5.00 +19 54666357 rs2289146 C G 100 PASS AA=c;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.21;AVGPOST=0.9973;ERATE=0.0008;EUR_AF=0.33;LDAF=0.3094;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54666537 rs9636146 G A 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.24;AMR_AF=0.04;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1051;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54677759 rs4806721 T C 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9942;RSQ=0.9506;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +19 54722275 rs1132609 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2121;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54724390 rs201291137 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9732;ERATE=0.0030;LDAF=0.0273;RSQ=0.5834;SNPSOURCE=EXOME;THETA=0.0279;VT=SNP GT:DS:GL 0|1:1.050:-2.96,-0.46,-0.19 +19 54724635 rs1052983 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.12;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9852;ERATE=0.0082;EUR_AF=0.0013;LDAF=0.0389;RSQ=0.8435;SNPSOURCE=LOWCOV,EXOME;THETA=0.0293;VT=SNP GT:DS:GL 0|1:0.950:-2.69,-0.45,-0.19 +19 54725995 rs61187720 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.70;AMR_AF=0.67;AN=2;ASN_AF=0.69;AVGPOST=0.9023;ERATE=0.0028;EUR_AF=0.76;LDAF=0.7048;RSQ=0.8001;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.36,-0.02 +19 54726324 rs79304773 G C 100 PASS AA=g;AC=2;AF=0.81;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=0.70;AVGPOST=0.8997;ERATE=0.0076;EUR_AF=0.88;LDAF=0.7878;RSQ=0.7918;SNPSOURCE=EXOME;THETA=0.0214;VT=SNP GT:DS:GL 1|1:1.950:-2.96,-0.46,-0.18 +19 54742999 rs8100079 C A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.70;AMR_AF=0.26;AN=2;ASN_AF=0.05;AVGPOST=0.9924;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3023;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54743004 rs8099961 A T 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.70;AMR_AF=0.25;AN=2;ASN_AF=0.05;AVGPOST=0.9910;ERATE=0.0009;EUR_AF=0.25;LDAF=0.2989;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54744104 rs11084326 T G 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.24;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.8507;ERATE=0.0066;EUR_AF=0.18;LDAF=0.2155;RSQ=0.6147;SNPSOURCE=LOWCOV,EXOME;THETA=0.0115;VT=SNP GT:DS:GL 0|1:0.800:-0.36,-0.41,-0.76 +19 54744142 rs113149211 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.25;AMR_AF=0.02;AN=2;AVGPOST=0.9837;ERATE=0.0005;LDAF=0.0626;RSQ=0.9170;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.43,-0.20 +19 54744361 rs2361801 A C 100 PASS AA=a;AC=1;AF=0.43;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.52;AVGPOST=0.8790;ERATE=0.0117;EUR_AF=0.39;LDAF=0.4372;RSQ=0.8133;SNPSOURCE=LOWCOV,EXOME;THETA=0.0109;VT=SNP GT:DS:GL 0|1:1.150:-2.94,-0.46,-0.19 +19 54744387 rs71263238 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.40;AMR_AF=0.34;AN=2;ASN_AF=0.28;AVGPOST=0.8991;ERATE=0.0046;EUR_AF=0.35;LDAF=0.3597;RSQ=0.8293;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +19 54744799 rs1052975 G C 100 PASS AA=g;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.15;AN=2;ASN_AF=0.22;AVGPOST=0.9091;ERATE=0.0431;EUR_AF=0.21;LDAF=0.2095;RSQ=0.7318;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:0.950:-2.16,-0.01,-1.60 +19 54746051 rs620207 A C 100 PASS AA=a;AC=1;AF=0.49;AFR_AF=0.46;AMR_AF=0.44;AN=2;ASN_AF=0.56;AVGPOST=0.9592;ERATE=0.0261;EUR_AF=0.47;LDAF=0.4872;RSQ=0.9144;SNPSOURCE=LOWCOV,EXOME;THETA=0.0181;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54754737 rs7256245 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.03;AN=2;ASN_AF=0.06;AVGPOST=0.9987;ERATE=0.0009;EUR_AF=0.01;LDAF=0.0542;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0096;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54754752 rs433291 T C 100 PASS AA=t;AC=2;AF=0.75;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.81;AVGPOST=0.9678;ERATE=0.0137;EUR_AF=0.72;LDAF=0.7481;RSQ=0.9452;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +19 54754820 rs429425 T G 100 PASS AA=t;AC=2;AF=0.78;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=0.9637;ERATE=0.0048;EUR_AF=0.75;LDAF=0.7813;RSQ=0.9275;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +19 54755962 rs7248556 G A 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.16;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0615;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54755994 rs417523 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.77;AMR_AF=0.80;AN=2;ASN_AF=0.90;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8180;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54756302 rs415860 A G 100 PASS AA=a;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54758592 rs73938621 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.18;AMR_AF=0.03;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0663;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54759102 rs393600 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.77;AN=2;ASN_AF=0.95;AVGPOST=0.9846;ERATE=0.0015;EUR_AF=0.72;LDAF=0.8183;RSQ=0.9619;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.89,-0.39,-0.33 +19 54759110 rs440352 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.88;AMR_AF=0.77;AN=2;ASN_AF=0.95;AVGPOST=0.9873;ERATE=0.0014;EUR_AF=0.73;LDAF=0.8262;RSQ=0.9677;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +19 54779797 rs73938622 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.28;AMR_AF=0.03;AN=2;ASN_AF=0.04;AVGPOST=0.9992;ERATE=0.0003;LDAF=0.0786;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54781364 rs7249967 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.29;AMR_AF=0.03;AN=2;ASN_AF=0.04;AVGPOST=0.9965;ERATE=0.0005;LDAF=0.0795;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-0.12,-0.63,-4.22 +19 54781466 rs3859538 C G 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.82;AMR_AF=0.61;AN=2;ASN_AF=0.20;AVGPOST=0.9438;ERATE=0.0075;EUR_AF=0.61;LDAF=0.5393;RSQ=0.9270;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.050:-2.34,-0.01,-1.64 +19 54781843 rs4022330 C T 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.84;AMR_AF=0.58;AN=2;ASN_AF=0.20;AVGPOST=0.9917;ERATE=0.0006;EUR_AF=0.61;LDAF=0.5489;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-2.49,-0.00,-3.36 +19 54782327 rs7247025 G C 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.35;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9876;ERATE=0.0062;EUR_AF=0.0013;LDAF=0.0925;RSQ=0.9602;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|0:1.000:-3.74,-0.00,-5.00 +19 54782620 rs10404452 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.37;AMR_AF=0.03;AN=2;ASN_AF=0.05;AVGPOST=0.9904;ERATE=0.0015;EUR_AF=0.01;LDAF=0.1058;RSQ=0.9685;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-1.91,-0.01,-1.74 +19 54782919 rs386056 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.74;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3333;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.33,-0.27 +19 54783375 rs373032 T A 100 PASS AA=t;AC=2;AF=0.81;AFR_AF=0.84;AMR_AF=0.78;AN=2;ASN_AF=0.91;AVGPOST=0.9658;ERATE=0.0144;EUR_AF=0.72;LDAF=0.8052;RSQ=0.9300;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54783521 rs383925 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3349;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54783923 rs366337 A G 100 PASS AA=a;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9660;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54784130 rs383369 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.07;AMR_AF=0.25;AN=2;ASN_AF=0.74;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3136;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.18 +19 54801910 rs3815936 A G 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.44;AMR_AF=0.15;AN=2;ASN_AF=0.20;AVGPOST=0.9616;ERATE=0.0005;EUR_AF=0.04;LDAF=0.2029;RSQ=0.9296;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:1.900:-4.70,-0.64,-0.11 +19 54801916 rs3815937 A G 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.44;AMR_AF=0.15;AN=2;ASN_AF=0.20;AVGPOST=0.9603;ERATE=0.0020;EUR_AF=0.05;LDAF=0.2056;RSQ=0.9288;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.66,-0.11 +19 54802105 rs1975046 C T 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.66;AMR_AF=0.08;AN=2;ASN_AF=0.19;AVGPOST=0.9686;ERATE=0.0011;EUR_AF=0.0040;LDAF=0.2234;RSQ=0.9538;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 54802440 rs7508470 T G 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.77;AMR_AF=0.34;AN=2;ASN_AF=0.51;AVGPOST=0.9064;ERATE=0.0053;EUR_AF=0.12;LDAF=0.4153;RSQ=0.8857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-2.01,-0.40,-0.22 +19 54803504 rs6509862 A C 100 PASS AA=a;AC=2;AF=0.45;AFR_AF=0.82;AMR_AF=0.35;AN=2;ASN_AF=0.63;AVGPOST=0.9425;ERATE=0.0004;EUR_AF=0.12;LDAF=0.4471;RSQ=0.9338;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.58,-0.00 +19 54848090 rs3745419 T A 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.25;AVGPOST=0.9979;ERATE=0.0020;EUR_AF=0.19;LDAF=0.1565;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54848741 rs12985462 T C 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.24;AVGPOST=0.9902;ERATE=0.0090;EUR_AF=0.19;LDAF=0.1688;RSQ=0.9747;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +19 54849399 rs10419832 T C 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.32;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1167;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 54849463 rs12976217 C T 100 PASS AA=.;AC=1;AF=0.31;AFR_AF=0.31;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3148;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54849481 rs7256494 T G 100 PASS AA=.;AC=1;AF=0.36;AFR_AF=0.43;AMR_AF=0.41;AN=2;ASN_AF=0.26;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3564;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54875881 rs62132211 C T 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.05;AVGPOST=0.9948;ERATE=0.0007;EUR_AF=0.18;LDAF=0.1127;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0520;VT=SNP GT:DS:GL 0|1:0.550:-0.06,-0.87,-5.00 +19 54933631 rs139443585 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9979;ERATE=0.0004;LDAF=0.0094;RSQ=0.9160;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:0.900:-1.78,-0.01,-5.00 +19 54946748 rs149942161 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54946784 rs3745420 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.70;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3783;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54962579 rs1035452 C T 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.40;AMR_AF=0.47;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4246;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54965860 rs3813148 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.78;AMR_AF=0.53;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5635;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54965889 rs3813147 G C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.85;AMR_AF=0.59;AN=2;ASN_AF=0.37;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.63;LDAF=0.6044;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54966579 rs889147 C G 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.80;AMR_AF=0.59;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.63;LDAF=0.5883;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54973280 rs10423424 C G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.83;AMR_AF=0.53;AN=2;ASN_AF=0.35;AVGPOST=0.9962;ERATE=0.0130;EUR_AF=0.56;LDAF=0.5617;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 54974318 rs10406453 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.93;AMR_AF=0.62;AN=2;ASN_AF=0.34;AVGPOST=0.9944;ERATE=0.0005;EUR_AF=0.65;LDAF=0.6248;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.59 +19 54974774 rs1981829 A T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.72;AMR_AF=0.58;AN=2;ASN_AF=0.32;AVGPOST=0.9739;ERATE=0.0020;EUR_AF=0.60;LDAF=0.5499;RSQ=0.9621;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.41,-0.01,-1.71 +19 55014088 rs2042287 C T 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.16;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=0.9973;ERATE=0.0023;EUR_AF=0.11;LDAF=0.1392;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0177;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55014124 rs2287828 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.23;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.03;LDAF=0.0983;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55086775 rs1052120 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9217;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.32,-0.02 +19 55142739 rs1985501 A C 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.57;AMR_AF=0.45;AN=2;ASN_AF=0.59;AVGPOST=0.9936;ERATE=0.0013;EUR_AF=0.30;LDAF=0.4595;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +19 55142930 rs3843752 C T 100 PASS AA=c;AC=1;AF=0.47;AFR_AF=0.60;AMR_AF=0.45;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4708;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55143083 rs1061679 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.44;AN=2;ASN_AF=0.58;AVGPOST=0.9851;ERATE=0.0050;EUR_AF=0.29;LDAF=0.4564;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55143452 rs1061680 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.64;AMR_AF=0.42;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4568;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55143491 rs1061681 G T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.49;AMR_AF=0.40;AN=2;ASN_AF=0.53;AVGPOST=0.9829;ERATE=0.0120;EUR_AF=0.24;LDAF=0.4019;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55144186 rs272423 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.67;AMR_AF=0.53;AN=2;ASN_AF=0.29;AVGPOST=0.9529;ERATE=0.0089;EUR_AF=0.69;LDAF=0.5485;RSQ=0.9355;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55144720 rs61739180 A C 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.03;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0278;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55148242 rs1061684 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9927;ERATE=0.0021;EUR_AF=0.15;LDAF=0.1113;RSQ=0.9731;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55148249 rs16985478 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=0.9941;ERATE=0.0099;EUR_AF=0.13;LDAF=0.1143;RSQ=0.9789;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55175740 rs3745871 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.61;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.40;LDAF=0.4274;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55176262 rs731170 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.41;AMR_AF=0.61;AN=2;ASN_AF=0.79;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6441;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55176535 rs1925241 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.40;AMR_AF=0.35;AN=2;ASN_AF=0.56;AVGPOST=0.9796;ERATE=0.0112;EUR_AF=0.40;LDAF=0.4341;RSQ=0.9705;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55177929 rs760186 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.36;AMR_AF=0.08;AN=2;ASN_AF=0.45;AVGPOST=0.9968;ERATE=0.0017;EUR_AF=0.06;LDAF=0.2316;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55178162 rs11574576 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.44;AMR_AF=0.31;AN=2;ASN_AF=0.59;AVGPOST=0.9957;ERATE=0.0055;EUR_AF=0.31;LDAF=0.4103;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0144;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55179364 rs1048801 A G 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.46;AMR_AF=0.40;AN=2;ASN_AF=0.30;AVGPOST=0.9969;ERATE=0.0007;EUR_AF=0.33;LDAF=0.3610;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55315307 rs112963206 C G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.71;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=0.9654;ERATE=0.0006;EUR_AF=0.54;LDAF=0.6279;RSQ=0.9529;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.73 +19 55400971 rs77273876 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.13;AMR_AF=0.11;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0945;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55420801 rs3765013 C A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.74;AMR_AF=0.36;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4452;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55423488 rs73619967 T C 100 PASS AA=t;AC=1;AF=0.36;AFR_AF=0.54;AMR_AF=0.29;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3623;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55423530 rs73619969 C T 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.54;AMR_AF=0.28;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.3569;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55435088 rs184844567 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55439166 rs269933 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.51;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5822;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55441902 rs269950 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.49;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5753;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55441995 rs269951 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.49;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5759;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55447595 rs7359929 A G 100 PASS AA=a;AC=1;AF=0.24;AFR_AF=0.32;AMR_AF=0.24;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2389;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55447612 rs17699561 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.17;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2034;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55447681 rs104895512 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +19 55447840 rs4806626 A C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2445;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55451050 rs10418277 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=0.9945;ERATE=0.0017;EUR_AF=0.23;LDAF=0.1911;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.900:-0.10,-0.70,-5.00 +19 55451232 rs775882 C T 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.47;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9936;ERATE=0.0067;EUR_AF=0.23;LDAF=0.2779;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55451797 rs775883 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.56;AMR_AF=0.39;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3729;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55493095 rs17781858 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.41;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2114;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55494881 rs11672113 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.45;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2934;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55501579 rs1654495 A C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3697;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55512137 rs12768 C A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.47;AMR_AF=0.58;AN=2;ASN_AF=0.72;AVGPOST=0.9991;ERATE=0.0091;EUR_AF=0.48;LDAF=0.5591;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55512232 rs1043673 C A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.41;AMR_AF=0.44;AN=2;ASN_AF=0.18;AVGPOST=0.9988;ERATE=0.0034;EUR_AF=0.42;LDAF=0.3572;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55512316 rs1043678 T G 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.33;AMR_AF=0.44;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.42;LDAF=0.3491;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55525894 rs1671151 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.54;AMR_AF=0.84;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7664;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55526345 rs1671152 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.69;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8576;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +19 55526359 rs1654413 A T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.55;AMR_AF=0.85;AN=2;ASN_AF=0.82;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.84;LDAF=0.7695;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +19 55526373 rs2304166 G C 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.27;AMR_AF=0.59;AN=2;ASN_AF=0.22;AVGPOST=0.9933;ERATE=0.0005;EUR_AF=0.60;LDAF=0.4239;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.36 +19 55527081 rs2304167 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.52;AMR_AF=0.84;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7619;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55530035 rs1654416 C T 100 PASS AA=N;AC=2;AF=0.78;AFR_AF=0.60;AMR_AF=0.86;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7824;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55536595 rs1613662 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.75;AMR_AF=0.90;AN=2;ASN_AF=0.98;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8692;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.35,-0.00 +19 55538980 rs1654425 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9735;ERATE=0.0089;EUR_AF=0.83;LDAF=0.8986;RSQ=0.8988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55539061 rs892089 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.58;AMR_AF=0.83;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7708;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55539072 rs892090 T G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.75;AMR_AF=0.90;AN=2;ASN_AF=0.98;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8690;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55559715 rs2305543 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.27;AMR_AF=0.23;AN=2;ASN_AF=0.48;AVGPOST=0.9919;ERATE=0.0007;EUR_AF=0.23;LDAF=0.3051;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55589544 rs10411094 G A 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4439;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +19 55597369 rs2290476 G C 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.43;AMR_AF=0.44;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4513;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55598724 rs1054940 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.35;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.50;LDAF=0.4496;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55605694 rs3803898 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.44;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=0.9952;ERATE=0.0007;EUR_AF=0.40;LDAF=0.4593;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0091;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55614923 rs2532060 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.90;AMR_AF=0.51;AN=2;ASN_AF=0.77;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.41;LDAF=0.6332;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55623806 rs604216 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.28;AN=2;ASN_AF=0.26;AVGPOST=0.9980;ERATE=0.0013;EUR_AF=0.29;LDAF=0.2260;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +19 55624113 rs34521018 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1197;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55644325 rs890868 A C 100 PASS AA=N;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=0.92;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9711;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +19 55652712 rs73060953 G C 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.04;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0331;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55653297 rs67795913 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.18;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1130;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55665584 rs7252610 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55671337 rs890872 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55693286 rs45607834 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.09;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0650;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55697279 rs61734259 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.09;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0670;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55697746 rs202052377 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9294;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +19 55697766 rs77296713 T A 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55697795 rs111326663 G C 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.10;AN=2;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.09;LDAF=0.0854;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55697889 rs1136578 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.09;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0769;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55699454 rs890870 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55699575 rs3803905 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.61;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4316;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55708557 rs2288521 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.85;AMR_AF=0.69;AN=2;ASN_AF=0.41;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.66;LDAF=0.6441;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55715319 rs9304763 C G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3863;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55738634 rs4644955 T C 100 PASS AA=.;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9372;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.55,-0.01 +19 55739515 rs4255895 T C 100 PASS AA=.;AC=2;AF=0.68;AFR_AF=0.70;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9958;ERATE=0.0054;EUR_AF=0.64;LDAF=0.6807;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +19 55739689 rs10413828 G A 100 PASS AA=.;AC=2;AF=0.46;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.63;AVGPOST=0.9992;ERATE=0.0027;EUR_AF=0.42;LDAF=0.4567;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55752662 rs200841391 T C 100 PASS AA=T;AC=1;AF=0.0014;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9987;ERATE=0.0016;EUR_AF=0.0013;LDAF=0.0020;RSQ=0.7072;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55758397 rs200237875 G A 100 PASS AA=G;AC=1;AF=0.0014;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=0.9984;ERATE=0.0016;LDAF=0.0021;RSQ=0.6976;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55776753 rs199998150 C A 100 PASS AA=c;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55815159 rs17851415 C A 100 PASS AA=.;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0780;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55815894 rs1172820 T C 100 PASS AA=.;AC=2;AF=0.55;AFR_AF=0.93;AMR_AF=0.58;AN=2;ASN_AF=0.20;AVGPOST=0.9970;ERATE=0.0005;EUR_AF=0.54;LDAF=0.5479;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +19 55816678 rs1172821 C T 100 PASS AA=.;AC=1;AF=0.30;AFR_AF=0.41;AMR_AF=0.41;AN=2;ASN_AF=0.07;AVGPOST=0.9986;ERATE=0.0031;EUR_AF=0.36;LDAF=0.3037;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55817614 rs2305784 G T 100 PASS AA=.;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55824332 rs7246479 T G 100 PASS AA=.;AC=2;AF=0.53;AFR_AF=0.97;AMR_AF=0.58;AN=2;ASN_AF=0.17;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5324;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 55831576 rs897794 A C 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.31;AMR_AF=0.36;AN=2;ASN_AF=0.05;AVGPOST=0.9872;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2455;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55831577 rs897795 A C 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.31;AMR_AF=0.36;AN=2;ASN_AF=0.05;AVGPOST=0.9866;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2450;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55831723 rs897797 T G 100 PASS AA=.;AC=1;AF=0.40;AFR_AF=0.54;AMR_AF=0.52;AN=2;ASN_AF=0.08;AVGPOST=0.9977;ERATE=0.0018;EUR_AF=0.49;LDAF=0.4000;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55832427 rs10412726 T G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.57;AMR_AF=0.52;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.49;LDAF=0.4035;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55865350 rs12461665 G A 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.26;AMR_AF=0.48;AN=2;ASN_AF=0.69;AVGPOST=0.8975;ERATE=0.0141;EUR_AF=0.57;LDAF=0.5119;RSQ=0.8521;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.250:-3.08,-0.47,-0.18 +19 55879872 rs1126757 C T 100 PASS AA=c;AC=1;AF=0.43;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4301;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55889451 rs77912983 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.10;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0563;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 55913038 rs7608 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.47;AVGPOST=0.9019;ERATE=0.0966;EUR_AF=0.68;LDAF=0.5761;RSQ=0.8438;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.54,-0.01 +19 55966346 rs2277959 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.43;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=0.9935;ERATE=0.0152;EUR_AF=0.34;LDAF=0.3757;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 55993876 rs10423355 T C 100 PASS AA=.;AC=1;AF=0.71;AFR_AF=0.84;AMR_AF=0.73;AN=2;ASN_AF=0.46;AVGPOST=0.9463;ERATE=0.0044;EUR_AF=0.80;LDAF=0.6941;RSQ=0.9050;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.06,-0.87,-5.00 +19 55995710 rs73057174 A G 100 PASS AA=.;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0091;RSQ=0.9278;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.37 +19 56041255 rs620251 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=0.90;AVGPOST=0.9830;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9566;RSQ=0.8330;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.83,-0.07 +19 56047448 rs310453 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.94;AMR_AF=0.92;AN=2;ASN_AF=0.82;AVGPOST=0.9608;ERATE=0.0051;EUR_AF=0.90;LDAF=0.8884;RSQ=0.8589;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56104136 rs7247236 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.89;AMR_AF=0.79;AN=2;ASN_AF=0.57;AVGPOST=0.9904;ERATE=0.0007;EUR_AF=0.81;LDAF=0.7627;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56114045 rs1077806 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.40;AMR_AF=0.43;AN=2;ASN_AF=0.68;AVGPOST=0.9875;ERATE=0.0012;EUR_AF=0.54;LDAF=0.5240;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.66 +19 56114237 rs310459 G A 100 PASS AA=g;AC=1;AF=0.85;AFR_AF=0.73;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=0.94;LDAF=0.8519;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56134038 rs908668 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2219;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.05,-0.97,-5.00 +19 56153868 rs310475 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.21;AMR_AF=0.56;AN=2;ASN_AF=0.56;AVGPOST=0.9491;ERATE=0.0177;EUR_AF=0.68;LDAF=0.5211;RSQ=0.9320;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +19 56160399 rs7246799 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9867;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56162776 rs2287791 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.66;AMR_AF=0.92;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8117;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +19 56162881 rs519856 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.24;AMR_AF=0.61;AN=2;ASN_AF=0.52;AVGPOST=0.9963;ERATE=0.0021;EUR_AF=0.66;LDAF=0.5222;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-4.10,-0.54,-0.15 +19 56175149 rs310444 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9460;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56180968 rs617073 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.91;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.91;LDAF=0.7989;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56185250 rs664684 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.28;AMR_AF=0.74;AN=2;ASN_AF=0.52;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.80;LDAF=0.6011;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56241265 rs193384 A G 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56249445 rs755804 A G 100 PASS AA=N;AC=1;AF=0.61;AFR_AF=0.70;AMR_AF=0.59;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6109;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56249672 rs56211941 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1546;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56307583 rs2616940 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.72;AMR_AF=0.76;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.71;LDAF=0.7016;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56320663 rs12461110 G A 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9990;ERATE=0.0016;EUR_AF=0.32;LDAF=0.2434;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56321414 rs299163 C A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9647;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56369189 rs441827 G A 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4763;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56369215 rs395503 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4763;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56369593 rs421810 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.39;AMR_AF=0.52;AN=2;ASN_AF=0.66;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4976;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56370166 rs379327 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1185;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56372705 rs4801635 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.41;AMR_AF=0.49;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.45;LDAF=0.5051;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56390237 rs302453 A T 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1604;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56392875 rs302456 T G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.36;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2610;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56410340 rs302828 T G 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.83;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8811;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56413583 rs302835 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.88;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8985;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56423033 rs4801643 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.68;AMR_AF=0.36;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5091;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56423074 rs977070 C G 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.68;AMR_AF=0.36;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.45;LDAF=0.5114;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56423254 rs304002 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.68;AMR_AF=0.36;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5091;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56423668 rs304001 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.66;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6243;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56423692 rs304000 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.72;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6358;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56423728 rs303999 A G 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.72;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6365;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56423893 rs303998 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.67;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6257;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56424443 rs303997 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.73;AMR_AF=0.54;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6394;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56459342 rs306507 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.61;LDAF=0.7139;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56459614 rs306506 G C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.74;AMR_AF=0.72;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7159;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56473645 rs11671531 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.25;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4360;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56477687 rs306497 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8547;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56477710 rs306496 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.77;AMR_AF=0.62;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6357;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56487450 rs306482 T G 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.39;AMR_AF=0.63;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5658;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56487603 rs306481 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.41;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5521;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56490778 rs306475 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.76;AMR_AF=0.67;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6108;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56499279 rs306457 G C 100 PASS AA=g;AC=1;AF=0.73;AFR_AF=0.74;AMR_AF=0.78;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.77;LDAF=0.7289;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56511082 rs35427984 C G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.91;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.90;LDAF=0.9274;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0184;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56515331 rs35669530 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0224;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 56520129 rs12460633 G A 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.21;AMR_AF=0.36;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2605;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +19 56520150 rs12460592 C G 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.21;AMR_AF=0.36;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2610;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56539240 rs397977 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.14;AMR_AF=0.44;AN=2;ASN_AF=0.36;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3476;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 56561749 rs2574762 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.83;AMR_AF=0.97;AN=2;ASN_AF=0.76;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8875;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56565164 rs3103057 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.77;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9007;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56671447 rs79199638 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.20;AVGPOST=0.9831;ERATE=0.0012;EUR_AF=0.04;LDAF=0.0795;RSQ=0.9089;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.85,-0.26,-0.34 +19 56691912 rs274171 G C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.85;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.79;LDAF=0.8482;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56693643 rs274174 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56694505 rs575756 C T 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.16;AMR_AF=0.39;AN=2;ASN_AF=0.36;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.35;LDAF=0.3163;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56703248 rs527025 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2553;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56704101 rs11084427 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=0.9963;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2344;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +19 56953863 rs8107758 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9790;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 56953963 rs35914474 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.25;AMR_AF=0.39;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3181;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 57029837 rs10416032 T G 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.19;AMR_AF=0.30;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3159;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57050515 rs7258088 C G 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.43;AMR_AF=0.35;AN=2;ASN_AF=0.63;AVGPOST=0.9953;ERATE=0.0024;EUR_AF=0.26;LDAF=0.4090;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57060317 rs2074940 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.59;AMR_AF=0.36;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4470;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57065189 rs145011 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2331;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57088850 rs3752180 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.15;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3304;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57089050 rs4801177 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.94;AMR_AF=0.75;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7692;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57293394 rs2286751 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.69;AMR_AF=0.79;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7225;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57327503 rs33931963 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.21;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1993;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57641146 rs1027392 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.69;AMR_AF=0.72;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7341;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57642098 rs3764574 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.27;AMR_AF=0.50;AN=2;ASN_AF=0.36;AVGPOST=0.9991;ERATE=0.0009;EUR_AF=0.49;LDAF=0.4106;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57642782 rs9973206 C A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9328;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 57646570 rs4801433 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.24;AMR_AF=0.50;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4050;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57647015 rs7251328 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.62;AMR_AF=0.63;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.54;LDAF=0.6357;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57647236 rs7252632 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.71;AMR_AF=0.72;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7381;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57648277 rs4801200 A T 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.24;AMR_AF=0.51;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4036;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57665750 rs8108591 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0019;EUR_AF=0.50;LDAF=0.4173;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57723007 rs2074858 G C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.84;AMR_AF=0.64;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5973;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57723013 rs917340 G A 100 PASS AA=g;AC=1;AF=0.60;AFR_AF=0.84;AMR_AF=0.64;AN=2;ASN_AF=0.30;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5976;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57742472 rs11084490 G C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.87;AN=2;ASN_AF=0.87;AVGPOST=0.9885;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8614;RSQ=0.9680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +19 57742489 rs58264281 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.57;AMR_AF=0.83;AN=2;ASN_AF=0.84;AVGPOST=0.9452;ERATE=0.0138;EUR_AF=0.80;LDAF=0.7458;RSQ=0.9151;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.65,-0.11 +19 57742497 rs112039303 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.40;AVGPOST=0.7391;ERATE=0.0287;EUR_AF=0.32;LDAF=0.3388;RSQ=0.5560;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.300:-0.48,-0.48,-0.48 +19 57742703 rs758097 A G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.27;AMR_AF=0.34;AN=2;ASN_AF=0.69;AVGPOST=0.9947;ERATE=0.0058;EUR_AF=0.27;LDAF=0.3918;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-3.14,-0.48,-0.18 +19 57743067 rs2361127 C G 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.27;AMR_AF=0.35;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0016;EUR_AF=0.27;LDAF=0.3940;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 57802024 rs45619736 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57802806 rs2041109 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1956;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57802824 rs2041110 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1961;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57832214 rs56960413 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1097;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57832257 rs4801462 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9981;ERATE=0.0035;EUR_AF=0.33;LDAF=0.3442;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57838018 rs6510057 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4556;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57839150 rs8100491 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.72;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6897;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 57839567 rs1968090 T A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.72;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6896;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 57840547 rs10410649 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2130;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57865082 rs862703 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.58;AMR_AF=0.74;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0070;EUR_AF=0.72;LDAF=0.7481;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 57865149 rs862704 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.18;AN=2;ASN_AF=0.27;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.18;LDAF=0.2144;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57867599 rs862708 T C 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.10;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0923;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 57868336 rs862709 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9890;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 57909872 rs4801478 G A 100 PASS AA=A;AC=1;AF=0.89;AFR_AF=0.94;AMR_AF=0.88;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8945;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57954628 rs7249430 G A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.77;AVGPOST=0.9978;ERATE=0.0053;EUR_AF=0.56;LDAF=0.5927;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57956828 rs7246856 T G 100 PASS AA=-;AC=1;AF=0.69;AFR_AF=0.76;AMR_AF=0.63;AN=2;ASN_AF=0.78;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.60;LDAF=0.6900;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57967049 rs61744949 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.30;AMR_AF=0.37;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4017;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57967133 rs28649880 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.30;AMR_AF=0.37;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4022;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57984918 rs2074058 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4036;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57985460 rs2074059 T A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.61;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.64;LDAF=0.6650;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 57985566 rs2074060 G C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.61;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6641;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58001512 rs11672136 T A 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.32;AMR_AF=0.39;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4186;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58002819 rs6510085 T A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.59;AMR_AF=0.71;AN=2;ASN_AF=0.72;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6762;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58004346 rs2074076 G C 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.59;AMR_AF=0.71;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6769;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58004931 rs2074077 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.47;AMR_AF=0.65;AN=2;ASN_AF=0.66;AVGPOST=0.9792;ERATE=0.0316;EUR_AF=0.61;LDAF=0.5988;RSQ=0.9724;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58011421 rs12463137 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.17;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=0.9518;ERATE=0.0010;EUR_AF=0.24;LDAF=0.2605;RSQ=0.9103;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.00 +19 58016193 rs4801227 A G 100 PASS AA=a;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.28;AVGPOST=0.9902;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1801;RSQ=0.9792;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +19 58016196 rs4801228 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.28;AVGPOST=0.9900;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1798;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-5.00 +19 58038964 rs12461014 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9855;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0092;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +19 58058536 rs1548476 A G 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.68;AMR_AF=0.56;AN=2;ASN_AF=0.75;AVGPOST=0.9985;ERATE=0.0160;EUR_AF=0.56;LDAF=0.6368;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58083467 rs73060436 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.15;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1641;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58095678 rs11880137 C G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.20;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1448;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.44,-0.45,-0.55 +19 58115803 rs11881999 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1170;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58117083 rs9677004 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.50;AMR_AF=0.21;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2883;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58117223 rs2360543 T A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.91;AMR_AF=0.73;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7558;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58117399 rs11883343 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0673;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58131623 rs10413455 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=0.9990;ERATE=0.0010;EUR_AF=0.04;LDAF=0.0896;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58231807 rs2239986 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.96;AMR_AF=0.64;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7089;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58419874 rs10415951 T C 100 PASS AA=.;AC=1;AF=0.31;AFR_AF=0.27;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9876;ERATE=0.0094;EUR_AF=0.36;LDAF=0.3084;RSQ=0.9800;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:0.950:-0.11,-0.66,-4.70 +19 58420162 rs10416584 T C 100 PASS AA=.;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.25;AVGPOST=0.9755;ERATE=0.0127;EUR_AF=0.32;LDAF=0.2791;RSQ=0.9606;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.49,-0.00,-2.51 +19 58420167 rs17852300 T C 100 PASS AA=.;AC=1;AF=0.21;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=0.9869;ERATE=0.0017;EUR_AF=0.26;LDAF=0.2080;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-3.19 +19 58421128 rs201944488 C T 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9445;ERATE=0.0136;EUR_AF=0.28;LDAF=0.2596;RSQ=0.8870;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.57,-0.02,-1.38 +19 58453342 rs959231 T C 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.29;AN=2;ASN_AF=0.29;AVGPOST=0.9984;ERATE=0.0022;EUR_AF=0.30;LDAF=0.2610;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58455381 rs257652 C T 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9890;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 58485439 rs257676 C T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.96;AMR_AF=0.70;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.63;LDAF=0.7428;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58549366 rs159870 C G 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.68;AMR_AF=0.71;AN=2;ASN_AF=0.48;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.73;LDAF=0.6497;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58549593 rs2241406 C G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.89;AMR_AF=0.84;AN=2;ASN_AF=0.49;AVGPOST=0.9965;ERATE=0.0005;EUR_AF=0.90;LDAF=0.7781;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.60 +19 58598670 rs2287837 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.22;LDAF=0.2506;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58598784 rs2260914 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.83;AMR_AF=0.71;AN=2;ASN_AF=0.62;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.77;LDAF=0.7325;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.70 +19 58600048 rs1529329 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2514;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58774071 rs260462 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.44;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5510;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 58806083 rs260471 T C 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.42;AMR_AF=0.31;AN=2;ASN_AF=0.51;AVGPOST=0.9982;ERATE=0.0049;EUR_AF=0.24;LDAF=0.3637;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 58858676 rs1265957 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9370;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.86,-0.01 +19 58864479 rs893184 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.70;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=0.9914;ERATE=0.0099;EUR_AF=0.93;LDAF=0.8610;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 58899466 rs1529958 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.65;AMR_AF=0.50;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5031;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.08,-0.78 +19 58904396 rs10853905 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1454;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58906163 rs2241787 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=0.9928;ERATE=0.0038;EUR_AF=0.39;LDAF=0.4664;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58920551 rs147393087 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0051;RSQ=0.9387;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.27 +19 58921296 rs34511020 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1614;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58928299 rs11668757 A T 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1390;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58928302 rs10423138 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.81;AMR_AF=0.42;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5064;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58928309 rs11668789 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1609;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58929052 rs3764535 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.61;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9985;ERATE=0.0010;EUR_AF=0.49;LDAF=0.4605;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58929136 rs3764534 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.81;AMR_AF=0.42;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5064;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58929194 rs3764533 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.60;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4555;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58929200 rs35652377 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1609;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58945089 rs3764529 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1590;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58945962 rs9941466 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9580;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 58946056 rs1465789 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.81;AMR_AF=0.42;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5050;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58946203 rs1122955 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1526;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +19 58951096 rs45617039 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1525;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-0.01,-1.71,-5.00 +19 58951123 rs7259841 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.80;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5605;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-3.55,-0.00,-5.00 +19 58982384 rs10418774 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 58983558 rs55875034 T G 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1414;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58989424 rs731259 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1353;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 58989495 rs893185 A C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.67;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4562;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 59010593 rs4801274 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.92;LDAF=0.8787;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +19 59023166 rs34415062 G A 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1633;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.900:-0.16,-0.51,-5.00 +19 59023174 rs35350976 A G 100 PASS AA=a;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1606;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:0.900:-0.03,-1.15,-5.00 +19 59025685 rs4801602 A C 100 PASS AA=N;AC=2;AF=0.89;AFR_AF=0.76;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.95;LDAF=0.8872;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +19 59028585 rs11545185 G A 100 PASS AA=g;AC=1;AF=0.15;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.06;AVGPOST=0.9908;ERATE=0.0014;EUR_AF=0.19;LDAF=0.1558;RSQ=0.9735;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 59056752 rs2305122 G C 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.22;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1645;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 59058693 rs3816329 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.24;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9953;ERATE=0.0015;EUR_AF=0.20;LDAF=0.1686;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 59067623 rs2305119 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.66;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=0.9994;ERATE=0.0028;EUR_AF=0.25;LDAF=0.3287;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 59074653 rs4756 T C 100 PASS AA=.;AC=1;AF=0.34;AFR_AF=0.68;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3348;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +19 59082605 rs3752109 C T 100 PASS AA=.;AC=1;AF=0.23;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2337;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 203081 rs471274 A C 100 PASS AA=N;AC=2;AF=0.61;AFR_AF=0.59;AMR_AF=0.69;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6147;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 204602 rs138275331 G C 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0091;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 224184 rs631343 C G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.73;AN=2;ASN_AF=0.56;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6598;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +18 252559 rs657138 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9564;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 260140 rs72856275 T A 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.05;AMR_AF=0.29;AN=2;ASN_AF=0.20;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2152;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +18 331827 rs9947291 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.07;AN=2;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0766;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 334758 rs2305026 T C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.94;AMR_AF=0.84;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0017;EUR_AF=0.84;LDAF=0.9035;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 334994 rs2305025 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.65;AMR_AF=0.54;AN=2;ASN_AF=0.75;AVGPOST=0.9797;ERATE=0.0186;EUR_AF=0.61;LDAF=0.6406;RSQ=0.9691;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 346821 rs3826628 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.15;AMR_AF=0.28;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2384;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 580623 rs61734344 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.26;AMR_AF=0.12;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0016;EUR_AF=0.13;LDAF=0.1710;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0186;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 624824 rs495799 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9597;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 625070 rs498466 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9922;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 658064 rs2853533 G C 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.35;AMR_AF=0.19;AN=2;ASN_AF=0.54;AVGPOST=0.9766;ERATE=0.0057;EUR_AF=0.14;LDAF=0.3055;RSQ=0.9634;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:0.950:-1.35,-0.02,-5.00 +18 724612 rs537141 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 905537 rs2231183 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.79;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9923;ERATE=0.0144;EUR_AF=0.98;LDAF=0.9343;RSQ=0.9591;SNPSOURCE=LOWCOV,EXOME;THETA=0.0144;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +18 907675 rs8192597 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.51;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=0.9543;ERATE=0.0053;EUR_AF=0.70;LDAF=0.6943;RSQ=0.9250;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.64,-0.00 +18 909561 rs2231187 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.26;AVGPOST=0.9946;ERATE=0.0104;EUR_AF=0.32;LDAF=0.2332;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0114;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 2539016 rs8084295 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9776;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 2547500 rs2677879 G T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.79;AMR_AF=0.55;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5818;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 2585077 rs6506019 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.56;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3505;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 2595443 rs12456560 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1165;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 2616457 rs1983346 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1760;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 2705700 rs635132 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.28;AMR_AF=0.70;AN=2;ASN_AF=0.69;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6059;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 2707619 rs2276092 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.61;AVGPOST=0.9812;ERATE=0.0180;EUR_AF=0.67;LDAF=0.6803;RSQ=0.9667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 2724930 rs633422 A T 100 PASS AA=A;AC=2;AF=0.28;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2792;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 2763697 rs483547 C T 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3369;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 2771516 rs300291 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9869;ERATE=0.0117;EUR_AF=0.99;LDAF=0.9672;RSQ=0.8385;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 2847361 rs112881773 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9298;ERATE=0.0007;EUR_AF=0.25;LDAF=0.1879;RSQ=0.8307;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 0|1:1.000:-2.54,-0.06,-0.90 +18 2909831 rs607411 C G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.40;AMR_AF=0.78;AN=2;ASN_AF=0.79;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.83;LDAF=0.7160;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 2937867 rs80338805 C A 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.0013;LDAF=0.0018;RSQ=0.9651;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 3067278 rs2230164 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.83;AMR_AF=0.42;AN=2;ASN_AF=0.55;AVGPOST=0.9978;ERATE=0.0052;EUR_AF=0.49;LDAF=0.5695;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 3067599 rs7227886 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.06;AN=2;AVGPOST=0.9984;ERATE=0.0015;EUR_AF=0.08;LDAF=0.0590;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 3075712 rs2298539 C A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.95;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5909;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 3089522 rs948298 G T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.75;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.80;LDAF=0.8041;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 3100429 rs7232329 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.15;AMR_AF=0.54;AN=2;ASN_AF=0.32;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.45;LDAF=0.3619;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 3112252 rs55779127 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.12;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.0984;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 3168816 rs2230167 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.34;AMR_AF=0.24;AN=2;ASN_AF=0.26;AVGPOST=0.9940;ERATE=0.0044;EUR_AF=0.24;LDAF=0.2669;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 3176040 rs8099021 C G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.83;AMR_AF=0.76;AN=2;ASN_AF=0.74;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7516;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 3188976 rs1962519 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.83;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4634;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 3214918 rs7232679 G C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.42;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9931;ERATE=0.0031;EUR_AF=0.23;LDAF=0.2697;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 3215156 rs1662316 C G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.08;AN=2;ASN_AF=0.16;AVGPOST=0.9961;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1161;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 3215158 rs1791085 C G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.08;AN=2;ASN_AF=0.16;AVGPOST=0.9962;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1161;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 3272855 rs6506099 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.94;AMR_AF=0.93;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9365;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 3272874 rs7407072 T A 100 PASS AA=t;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9355;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 3277237 rs10853294 G T 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9346;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 3450455 rs238132 C A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.62;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9903;ERATE=0.0010;EUR_AF=0.14;LDAF=0.2491;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +18 3457539 rs76540437 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.33;AMR_AF=0.12;AN=2;ASN_AF=0.24;AVGPOST=0.9988;ERATE=0.0039;EUR_AF=0.07;LDAF=0.1782;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 5292030 rs620652 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8404;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 5397383 rs61736460 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0120;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 5410574 rs3817466 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.28;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.92;LDAF=0.7578;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 5433570 rs2272130 A C 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.17;AMR_AF=0.66;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5604;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 5891637 rs28656885 C A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.41;AMR_AF=0.33;AN=2;ASN_AF=0.31;AVGPOST=0.9875;ERATE=0.0009;EUR_AF=0.36;LDAF=0.3539;RSQ=0.9777;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 5960165 rs505559 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.94;AMR_AF=0.56;AN=2;ASN_AF=0.95;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.51;LDAF=0.7303;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 6046717 rs7234770 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.66;AMR_AF=0.65;AN=2;ASN_AF=0.61;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5585;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 6837446 rs2303977 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.44;AN=2;ASN_AF=0.08;AVGPOST=0.9957;ERATE=0.0095;EUR_AF=0.47;LDAF=0.2731;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 6889973 rs4239328 A G 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.54;AMR_AF=0.56;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5859;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 6890434 rs1116757 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.57;AMR_AF=0.55;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5891;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 6890591 rs1116756 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.57;AMR_AF=0.55;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5892;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +18 6912143 rs1056408 A C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.76;AMR_AF=0.76;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7801;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 6943264 rs2016639 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.35;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.34;LDAF=0.2565;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 6947143 rs2155697 A C 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.36;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3670;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6949052 rs500355 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.57;AMR_AF=0.31;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3758;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6950999 rs62081480 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2632;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6977719 rs10164200 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1188;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 6977844 rs671871 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.60;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2536;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 6980523 rs607230 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.56;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7113;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6985270 rs11664063 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1586;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6985499 rs11664115 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1590;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6985506 rs616722 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.63;AMR_AF=0.79;AN=2;ASN_AF=0.94;AVGPOST=0.9895;ERATE=0.0212;EUR_AF=0.81;LDAF=0.8009;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6985655 rs617573 C T 100 PASS AA=T;AC=1;AF=0.86;AFR_AF=0.73;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8606;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6986259 rs62081531 G A 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1604;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6993673 rs62081533 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1360;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6997818 rs12961939 A C 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.20;AN=2;ASN_AF=0.07;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.28;LDAF=0.1829;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0143;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 6999628 rs625106 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.76;AMR_AF=0.35;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0015;EUR_AF=0.43;LDAF=0.4447;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 6999963 rs12970643 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.14;AMR_AF=0.08;AN=2;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.08;LDAF=0.0737;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 7008591 rs662471 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1956;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 7012123 rs9946794 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.83;AMR_AF=0.44;AN=2;ASN_AF=0.05;AVGPOST=0.9971;ERATE=0.0014;EUR_AF=0.37;LDAF=0.3996;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 7015714 rs603258 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.39;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2275;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 7017322 rs539713 A G 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.90;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.55;LDAF=0.5364;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 7023371 rs684634 A G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.83;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4269;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 7024345 rs548577 C T 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.85;AMR_AF=0.37;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4424;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +18 7033037 rs621993 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.72;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4058;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 7034448 rs566825 G A 100 PASS AA=A;AC=2;AF=0.40;AFR_AF=0.70;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0016;EUR_AF=0.41;LDAF=0.4018;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +18 7034464 rs674733 T A 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.71;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4054;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 7034508 rs566655 T G 100 PASS AA=T;AC=2;AF=0.17;AFR_AF=0.14;AMR_AF=0.18;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1755;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 7042099 rs9946620 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.21;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.20;LDAF=0.1815;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 7042104 rs9957859 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.04;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1448;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 7117623 rs334406 G C 100 PASS AA=g;AC=2;AF=0.48;AFR_AF=0.24;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=0.9728;ERATE=0.0033;EUR_AF=0.52;LDAF=0.4840;RSQ=0.9609;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +18 7567803 rs67536179 C G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.73;AMR_AF=0.36;AN=2;ASN_AF=0.72;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.19;LDAF=0.4780;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 7774104 rs875530 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.23;AMR_AF=0.49;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5279;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 8069868 rs2230601 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.51;AMR_AF=0.49;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4443;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 8380473 rs657374 T A 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.77;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0017;EUR_AF=0.67;LDAF=0.7006;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 8387058 rs664201 T G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.61;AMR_AF=0.80;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0016;EUR_AF=0.73;LDAF=0.7285;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 8387065 rs594742 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.83;AMR_AF=0.82;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0022;EUR_AF=0.73;LDAF=0.7819;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 8387195 rs593978 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.45;AMR_AF=0.76;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6490;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 8387219 rs593950 G C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.67;AMR_AF=0.80;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.73;LDAF=0.7404;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 8784370 rs918272 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.84;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9348;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 8784612 rs1965665 A G 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.13;AMR_AF=0.41;AN=2;ASN_AF=0.25;AVGPOST=0.9862;ERATE=0.0005;EUR_AF=0.36;LDAF=0.2872;RSQ=0.9755;SNPSOURCE=LOWCOV,EXOME;THETA=0.0098;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 8785897 rs775291 G A 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.33;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9698;ERATE=0.0154;EUR_AF=0.10;LDAF=0.1381;RSQ=0.9078;SNPSOURCE=LOWCOV,EXOME;THETA=0.0204;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 8825192 rs581894 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.62;AN=2;ASN_AF=0.42;AVGPOST=0.9788;ERATE=0.0211;EUR_AF=0.64;LDAF=0.6003;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 8825946 rs72942342 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0085;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0139;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 8826083 rs3744977 G C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=0.89;AVGPOST=0.9985;ERATE=0.0008;EUR_AF=0.98;LDAF=0.9039;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.87,-0.00 +18 9117867 rs906807 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.74;AMR_AF=0.79;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7596;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 9254857 rs7243088 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 9255982 rs4798791 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.38;AMR_AF=0.66;AN=2;ASN_AF=0.63;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5847;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 9535836 rs201580280 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0007;RSQ=0.6786;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 9570320 rs329003 T C 100 PASS AA=T;AC=2;AF=0.05;AFR_AF=0.0020;AMR_AF=0.08;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0522;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 9886890 rs601874 A G 100 PASS AA=a;AC=2;AF=0.18;AFR_AF=0.23;AMR_AF=0.20;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1805;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.92,-0.01 +18 9887433 rs2240907 A G 100 PASS AA=-;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9555;ERATE=0.0192;EUR_AF=0.10;LDAF=0.1048;RSQ=0.8214;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-3.55,-0.00,-3.01 +18 9887877 rs34362649 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0249;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 10455077 rs28379930 A G 100 PASS AA=a;AC=1;AF=0.56;AFR_AF=0.78;AMR_AF=0.46;AN=2;ASN_AF=0.46;AVGPOST=0.9875;ERATE=0.0008;EUR_AF=0.54;LDAF=0.5580;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.22,-0.40 +18 10468453 rs539412 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.35;AMR_AF=0.44;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4607;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 10539739 rs640832 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.75;AMR_AF=0.42;AN=2;ASN_AF=0.49;AVGPOST=0.9872;ERATE=0.0084;EUR_AF=0.39;LDAF=0.4978;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 10540432 rs510110 A C 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.35;AMR_AF=0.35;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3943;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 11689699 rs7236433 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9886;ERATE=0.0007;EUR_AF=0.14;LDAF=0.0901;RSQ=0.9406;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-2.09,-0.00,-3.74 +18 11752943 rs1895689 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.56;AMR_AF=0.17;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3325;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 11753716 rs8095592 G A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.56;AMR_AF=0.17;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3327;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 11753992 rs9963594 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0466;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 11824880 rs1647556 T A 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.37;AMR_AF=0.82;AN=2;ASN_AF=0.66;AVGPOST=0.9905;ERATE=0.0044;EUR_AF=0.79;LDAF=0.6719;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 11824886 rs1647557 T G 100 PASS AA=-;AC=1;AF=0.67;AFR_AF=0.38;AMR_AF=0.83;AN=2;ASN_AF=0.66;AVGPOST=0.9912;ERATE=0.0059;EUR_AF=0.80;LDAF=0.6708;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 11884670 rs643652 C G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.80;AMR_AF=0.51;AN=2;ASN_AF=0.90;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.55;LDAF=0.6908;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 11886563 rs662515 C G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.75;AMR_AF=0.33;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4873;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 11886739 rs45522032 C G 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.0026;LDAF=0.0019;RSQ=0.9558;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 11999038 rs45442994 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.11;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.12;LDAF=0.1677;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 12014411 rs643107 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +18 12308243 rs8087840 T A 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.45;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=0.9875;ERATE=0.0013;EUR_AF=0.76;LDAF=0.6290;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.24,-0.03 +18 12308245 rs8086821 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.45;AMR_AF=0.61;AN=2;ASN_AF=0.62;AVGPOST=0.9857;ERATE=0.0017;EUR_AF=0.77;LDAF=0.6296;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.24,-0.03 +18 12308377 rs8086993 C A 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.45;AMR_AF=0.61;AN=2;ASN_AF=0.62;AVGPOST=0.9960;ERATE=0.0006;EUR_AF=0.77;LDAF=0.6314;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +18 12348285 rs11553521 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.79;AMR_AF=0.62;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 12351342 rs11080572 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6348;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 12359920 rs8097342 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6339;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 12427118 rs7228666 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.24;AMR_AF=0.05;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.03;LDAF=0.0927;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 12512559 rs550613 C A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.84;LDAF=0.8237;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 12512574 rs567709 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +18 12678486 rs12966424 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3428;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 12703067 rs3809916 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.27;AMR_AF=0.30;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3410;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +18 12703192 rs3809919 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.27;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.46;LDAF=0.3419;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 12718488 rs149852307 C A 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +18 12718593 rs2302768 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.24;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3345;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 12978733 rs8182426 C G 100 PASS AA=a;AC=1;AF=0.15;AFR_AF=0.30;AMR_AF=0.08;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1476;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 12984144 rs6505776 C A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.97;AMR_AF=0.65;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.62;LDAF=0.7537;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 13885561 rs28926177 C G 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0027;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 14105016 rs61609068 C A 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.67;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3069;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +18 14105853 rs8094412 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1979;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 14105923 rs2159940 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 14542979 rs200806970 A G 100 PASS AA=a;AC=1;AF=0.49;AFR_AF=0.49;AMR_AF=0.44;AN=2;ASN_AF=0.52;AVGPOST=0.9200;ERATE=0.1007;EUR_AF=0.48;LDAF=0.4939;RSQ=0.6088;SNPSOURCE=EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.12 +18 14543057 rs9807633 T G 100 PASS AA=t;AC=1;AF=0.29;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.49;AVGPOST=0.9907;ERATE=0.0008;EUR_AF=0.16;LDAF=0.2873;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.100:-5.00,-0.00,-3.09 +18 14543098 rs11873462 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.48;AVGPOST=0.9907;ERATE=0.0017;EUR_AF=0.16;LDAF=0.2839;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.150:-5.00,-0.28,-0.32 +18 14543139 rs28535987 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=0.9093;ERATE=0.0339;EUR_AF=0.85;LDAF=0.7629;RSQ=0.8328;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.300:-3.27,-0.48,-0.17 +18 19153494 rs973730 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.85;AMR_AF=0.88;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8715;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 19154143 rs13381941 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5143;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 19995753 rs9946145 T C 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.26;AMR_AF=0.86;AN=2;ASN_AF=0.82;AVGPOST=0.9945;ERATE=0.0238;EUR_AF=0.93;LDAF=0.7382;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 20555219 rs2336916 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9218;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 20577669 rs17852769 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.37;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1426;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 20889611 rs17259154 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0968;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 20953720 rs8099409 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.50;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.50;LDAF=0.4524;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21017836 rs7226498 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9886;ERATE=0.0077;EUR_AF=0.88;LDAF=0.9141;RSQ=0.9491;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.36,-0.00 +18 21044087 rs2291992 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1047;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21046250 rs4800486 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.36;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2614;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21055092 rs7235571 A C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=0.9709;ERATE=0.0291;EUR_AF=0.88;LDAF=0.8883;RSQ=0.8966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 21100240 rs1367083 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6307;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21109250 rs1788825 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.96;AMR_AF=0.76;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.8177;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 21109269 rs1652375 T C 100 PASS AA=t;AC=2;AF=0.82;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.66;LDAF=0.8178;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +18 21113285 rs2510344 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.48;AMR_AF=0.56;AN=2;ASN_AF=0.64;AVGPOST=0.9991;ERATE=0.0014;EUR_AF=0.47;LDAF=0.5301;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21119291 rs6507720 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.72;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5877;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21119777 rs1140458 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.36;AMR_AF=0.56;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5032;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21120444 rs1805082 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.36;AMR_AF=0.56;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21124945 rs1788799 C G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.8176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 21140381 rs201956601 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21140432 rs1805081 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.40;LDAF=0.2455;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21148863 rs12970899 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1001;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21400005 rs7244406 A C 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.22;AMR_AF=0.46;AN=2;ASN_AF=0.20;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.61;LDAF=0.3879;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21413869 rs9962023 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.54;AMR_AF=0.59;AN=2;ASN_AF=0.76;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6618;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21437931 rs80114457 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.22;AMR_AF=0.47;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.3871;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21441717 rs12965685 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.20;AMR_AF=0.46;AN=2;ASN_AF=0.17;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.61;LDAF=0.3807;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21474827 rs1268716 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1760;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21481233 rs1154226 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1760;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21511034 rs1154232 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1577;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21511172 rs1258107 G C 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9667;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 21513768 rs1131521 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1494;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21526087 rs2288592 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.66;LDAF=0.4127;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21529722 rs2241643 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.23;AMR_AF=0.49;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4118;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21644091 rs56229252 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1057;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 21694618 rs4800176 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 21710321 rs12970083 C T 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 21736933 rs1049683 T G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.85;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8222;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 21739725 rs1049684 T C 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.60;AMR_AF=0.37;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0036;EUR_AF=0.40;LDAF=0.4674;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 21883552 rs1487377 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.50;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2523;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21891975 rs2337961 A G 100 PASS AA=a;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2408;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21894351 rs12966893 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0946;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21897189 rs34306542 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1242;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21898556 rs12955338 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1246;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 21912865 rs2848605 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.91;AMR_AF=0.32;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4689;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 22008913 rs582358 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.95;AMR_AF=0.97;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8736;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 22020543 rs677688 C G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.95;AMR_AF=0.97;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8734;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 23873463 rs1677016 T C 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.12;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5348;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 24442392 rs35248760 C A 100 PASS AA=C;AC=2;AF=0.08;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9952;ERATE=0.0078;EUR_AF=0.14;LDAF=0.0791;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 25543387 rs1041985 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.16;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3367;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 25565082 rs1220144 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 25570228 rs1628684 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 25572837 rs1662733 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9909;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 25573622 rs2957286 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 28581554 rs186776125 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 28611139 rs276936 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 28612229 rs2852003 G T 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0503;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 28649042 rs1893963 T C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.45;AMR_AF=0.18;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1896;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 28649166 rs1893962 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0774;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 28711519 rs1789072 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.32;AMR_AF=0.70;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6097;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 28719674 rs1789043 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.77;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7322;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +18 28734749 rs2249810 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.21;AMR_AF=0.57;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.62;LDAF=0.5334;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 28737299 rs2118342 T G 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.31;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6394;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 28934374 rs78995670 A G 100 PASS AA=A;AC=1;AF=0.0023;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 28968371 rs16959856 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.55;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7687;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 28968959 rs9956865 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.78;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8350;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 28969008 rs16959863 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.55;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7678;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 28983529 rs34620697 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0020;EUR_AF=0.01;LDAF=0.0055;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 28986333 rs4799570 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9593;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 28989674 rs1020839 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0014;EUR_AF=0.11;LDAF=0.1677;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 28992826 rs112653254 A C 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.05;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9973;ERATE=0.0035;EUR_AF=0.0026;LDAF=0.0167;RSQ=0.9430;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.950:-3.85,-0.00,-5.00 +18 28993183 rs12960081 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.17;AMR_AF=0.48;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4210;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 28993501 rs7234288 C A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.67;AMR_AF=0.73;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7678;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 29055957 rs1380866 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29104564 rs3737378 C A 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.30;AVGPOST=0.9943;ERATE=0.0064;EUR_AF=0.27;LDAF=0.2400;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29104698 rs2230233 C T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.82;AMR_AF=0.43;AN=2;ASN_AF=0.48;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5121;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29104878 rs62095194 G A 100 PASS AA=g;AC=2;AF=0.24;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2365;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29122799 rs2278792 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.49;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2722;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29126670 rs1791235 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.44;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5431;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29246207 rs9973109 A C 100 PASS AA=A;AC=1;AF=0.0023;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0022;RSQ=0.9720;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 29339910 rs3859364 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9971;RSQ=0.6605;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.16,-0.00 +18 29419462 rs7226615 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.18;AMR_AF=0.21;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3008;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 29426669 rs11660777 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1340;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 29432624 rs3737374 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.47;AMR_AF=0.25;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.35;LDAF=0.4008;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 29454644 rs2276145 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1271;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 29488804 rs12326860 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1335;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 29493533 rs11659244 T A 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.21;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2797;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 29496218 rs62093869 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.23;AMR_AF=0.22;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3134;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 29497573 rs6506948 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.7976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29617255 rs9947278 T G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.85;AMR_AF=0.64;AN=2;ASN_AF=0.42;AVGPOST=0.9975;ERATE=0.0025;EUR_AF=0.70;LDAF=0.6524;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29704652 rs11081746 G C 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3798;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 29793526 rs335518 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.32;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6178;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29795076 rs173032 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7076;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 29795101 rs233223 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.85;AMR_AF=0.82;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8438;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 30349691 rs17851892 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3267;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 30804756 rs466113 C T 100 PASS AA=t;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9956;RSQ=0.9699;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 30846895 rs9965081 A T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9310;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 30950168 rs9965655 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9228;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 31263320 rs8086318 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7587;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 31320229 rs2282632 A G 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.78;AMR_AF=0.66;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.7024;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 31323848 rs61995734 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.05;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0227;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 31324934 rs7232237 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.72;AMR_AF=0.64;AN=2;ASN_AF=0.90;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6811;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 32444040 rs1617318 G A 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.50;AMR_AF=0.25;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2833;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 32917644 rs2032729 T C 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.83;AMR_AF=0.81;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7381;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33048554 rs3088182 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.35;AN=2;ASN_AF=0.13;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2545;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 33269274 rs3737383 T A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0024;EUR_AF=0.16;LDAF=0.1975;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 33282985 rs9989616 A C 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0919;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 33647254 rs1789517 A C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.89;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9470;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.82,-0.00 +18 33694120 rs1050631 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2847;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 33696772 rs1789504 A C 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2848;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 33706614 rs1789528 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9664;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +18 33713287 rs1785905 T A 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3474;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 33718326 rs1785934 A C 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3473;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 33725874 rs1789546 T G 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.17;AMR_AF=0.41;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.2907;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 33725931 rs1785928 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 33744677 rs684890 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 33750046 rs8299 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3515;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 33767479 rs11665282 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.41;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=0.9538;ERATE=0.0052;EUR_AF=0.71;LDAF=0.6747;RSQ=0.9283;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.850:-5.00,-0.69,-0.10 +18 33778607 rs596644 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9928;RSQ=0.9576;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33779821 rs646424 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33779855 rs623053 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8926;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33779896 rs540967 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9945;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33780020 rs623558 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9927;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33783030 rs579596 T C 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.24;AMR_AF=0.54;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.55;LDAF=0.4785;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33785093 rs678560 G A 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8903;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33785185 rs667667 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9945;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33828980 rs567458 C G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5416;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 33831189 rs594445 C A 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.05;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2459;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 34081849 rs17565834 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.25;AMR_AF=0.28;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2600;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 34297753 rs3809994 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.34;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=0.9991;ERATE=0.0066;EUR_AF=0.34;LDAF=0.3830;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 34310668 rs3744903 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2880;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 34324091 rs2303510 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.38;AMR_AF=0.36;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3332;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 34324190 rs2303509 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.12;AMR_AF=0.34;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2693;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.00,-0.00 +18 34378445 rs3826606 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0357;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 34398914 rs1045781 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.26;LDAF=0.1307;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 34850846 rs1443638 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2454;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 40554120 rs16977171 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1166;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 40613840 rs12954451 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.25;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.3656;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 40850296 rs3744959 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1604;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 42532693 rs1064204 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1321;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 42533130 rs8096662 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9282;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 42533315 rs3786177 T A 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1321;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 43205630 rs41300078 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0617;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43206985 rs1484873 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.90;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8881;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43221341 rs7233416 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.93;AMR_AF=0.90;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8880;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 43246156 rs9960464 G A 100 PASS AA=g;AC=2;AF=0.38;AFR_AF=0.28;AMR_AF=0.48;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3840;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 43247001 rs2156609 C G 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.60;AMR_AF=0.77;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6517;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 43247784 rs9964193 C T 100 PASS AA=c;AC=2;AF=0.38;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.34;AVGPOST=0.9985;ERATE=0.0022;EUR_AF=0.44;LDAF=0.3763;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 43310415 rs2298720 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1962;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43316538 rs2298718 A G 100 PASS AA=a;AC=1;AF=0.71;AFR_AF=0.64;AMR_AF=0.73;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43328295 rs474270 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9967;ERATE=0.0045;EUR_AF=0.33;LDAF=0.1767;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 43329719 rs1032119 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.21;AMR_AF=0.24;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2217;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43405792 rs1440822 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.61;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.9917;ERATE=0.0124;EUR_AF=0.52;LDAF=0.5318;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43417752 rs78530686 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9803;ERATE=0.0010;EUR_AF=0.13;LDAF=0.2183;RSQ=0.9617;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:0.700:-0.15,-0.53,-3.28 +18 43432625 rs57761448 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.15;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.11;LDAF=0.1171;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43446734 rs3826633 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.96;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8410;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43488072 rs144175319 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9964;ERATE=0.0007;EUR_AF=0.01;LDAF=0.0207;RSQ=0.9374;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43497710 rs3744998 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.31;AMR_AF=0.48;AN=2;ASN_AF=0.56;AVGPOST=0.9974;ERATE=0.0013;EUR_AF=0.55;LDAF=0.4883;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 43652203 rs8085444 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.26;AN=2;ASN_AF=0.04;AVGPOST=0.9966;ERATE=0.0006;EUR_AF=0.38;LDAF=0.2133;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.950:-0.11,-0.66,-4.70 +18 43666952 rs8097521 C A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.33;AMR_AF=0.28;AN=2;ASN_AF=0.05;AVGPOST=0.9888;ERATE=0.0049;EUR_AF=0.36;LDAF=0.2583;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 43669980 rs2298787 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.36;AMR_AF=0.31;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2788;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 43698309 rs1866321 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.72;AMR_AF=0.52;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5639;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 43703223 rs12954742 C G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.45;AMR_AF=0.47;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4753;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 44595809 rs2289036 A T 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.62;LDAF=0.5342;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 44601611 rs3816125 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.23;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.3126;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 44635048 rs2635058 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 45555613 rs55732061 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.26;AVGPOST=0.9848;ERATE=0.0024;EUR_AF=0.17;LDAF=0.1930;RSQ=0.9638;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:0.900:-0.35,-0.41,-0.78 +18 45555829 rs7231151 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.53;AMR_AF=0.33;AN=2;ASN_AF=0.43;AVGPOST=0.9829;ERATE=0.0038;EUR_AF=0.27;LDAF=0.3819;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.78 +18 46284587 rs1038308 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.99;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=0.9923;ERATE=0.0076;EUR_AF=0.78;LDAF=0.8481;RSQ=0.9785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 46385948 rs3752082 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.91;AMR_AF=0.56;AN=2;ASN_AF=0.23;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5423;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 47017820 rs1943676 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.34;AMR_AF=0.42;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3793;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47088655 rs34474737 T G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.32;LDAF=0.2722;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47093790 rs2000812 C T 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.98;AMR_AF=0.72;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7437;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +18 47093864 rs2000813 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.29;LDAF=0.2436;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47102002 rs2276269 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.85;AMR_AF=0.52;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5520;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47339798 rs2945506 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.57;AMR_AF=0.43;AN=2;ASN_AF=0.24;AVGPOST=0.9918;ERATE=0.0012;EUR_AF=0.55;LDAF=0.4529;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.40 +18 47373466 rs3017176 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.42;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4982;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47375932 rs488890 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.43;AMR_AF=0.39;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3596;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47398504 rs3826580 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2902;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 47398549 rs3826579 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2902;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 47405304 rs2276176 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.27;AMR_AF=0.22;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2798;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 47429022 rs2298624 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.24;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1421;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 47455923 rs2298628 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.41;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9953;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4226;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47463587 rs1790797 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.80;AMR_AF=0.64;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6431;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47480660 rs1787299 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5137;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47488625 rs17715416 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2926;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47511113 rs17659179 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0380;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 47563299 rs1815930 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9721;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 47787402 rs1899671 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.46;AMR_AF=0.72;AN=2;ASN_AF=0.79;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6746;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 47810251 rs3819217 C G 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.20;AMR_AF=0.51;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3971;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 47810351 rs7228084 A G 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.57;AMR_AF=0.76;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7121;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 47810731 rs2276367 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.80;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 47812587 rs11555886 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.0035;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.15;LDAF=0.0757;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 47908556 rs6507992 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.90;AMR_AF=0.74;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7623;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 48190440 rs3752087 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3325;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 48326378 rs2586778 G T 100 PASS AA=g;AC=1;AF=0.44;AFR_AF=0.25;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4410;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 48327815 rs2276186 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.23;AMR_AF=0.56;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4273;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 48333203 rs4940019 C G 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.19;AMR_AF=0.64;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.49;LDAF=0.4489;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 48446953 rs674210 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.79;AMR_AF=0.75;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6809;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 49867224 rs9951523 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9908;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 50432602 rs2229080 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.39;AMR_AF=0.44;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4566;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 50450240 rs2276204 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.31;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3446;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 50832102 rs1431196 A G 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2048;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 50917982 rs12604262 C T 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.18;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3395;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 50936780 rs10853631 G A 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.18;AMR_AF=0.37;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.53;LDAF=0.3473;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 50936994 rs34395300 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.18;AMR_AF=0.37;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3464;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 50937026 rs11873515 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.18;AMR_AF=0.37;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3464;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 51053176 rs17515923 T G 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0014;EUR_AF=0.39;LDAF=0.2148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 51820805 rs8305 G A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.98;AMR_AF=0.68;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.71;LDAF=0.7683;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 51880841 rs7242085 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.12;AMR_AF=0.39;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4264;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 51880986 rs1370363 C T 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.96;AMR_AF=0.66;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7545;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 51904498 rs3753057 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1975;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 51904641 rs3753056 A G 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.89;AMR_AF=0.72;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7477;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 51904644 rs3753055 G A 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.89;AMR_AF=0.72;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7477;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 52258548 rs35428499 T C 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1125;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 52265308 rs9947055 A C 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.43;AMR_AF=0.51;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5626;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 52555398 rs4343367 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 52575002 rs1944382 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 52605188 rs1344011 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1925;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 52608329 rs8087479 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9894;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 54281790 rs655539 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0248;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 54305564 rs657489 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0633;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 54339818 rs568078 C G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.65;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9150;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 54348514 rs605067 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.65;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9154;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 54348650 rs474607 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.65;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9159;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 54354074 rs1943016 C T 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.27;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.88;LDAF=0.7635;RSQ=0.9984;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 54354239 rs576095 T C 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.65;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9159;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +18 54359062 rs2110414 G A 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.28;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.7646;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 54361837 rs637823 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0618;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 54448778 rs2302845 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.34;AMR_AF=0.69;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6005;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 55027212 rs1942964 T G 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.06;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.50;LDAF=0.3598;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 55221648 rs536560 T C 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.97;AMR_AF=0.68;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7335;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 55226383 rs536765 G C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.97;AMR_AF=0.67;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7239;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 55240455 rs577152 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 55317676 rs222581 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 55334295 rs4306606 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1513;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 55338656 rs317838 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.46;AMR_AF=0.56;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5087;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 55359082 rs34315917 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 55362532 rs319443 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 55364830 rs319439 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.59;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4936;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 55364852 rs319438 A G 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56149048 rs3744867 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.46;AMR_AF=0.40;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4040;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 56149099 rs7240666 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9045;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56202059 rs10469211 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9958;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56202120 rs7234999 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0713;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 56202394 rs7240355 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 56202418 rs10469212 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9392;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56202683 rs33910491 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 56202982 rs3826594 A T 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56203411 rs3809980 G C 100 PASS AA=g;AC=1;AF=0.70;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56203447 rs3809979 A G 100 PASS AA=g;AC=1;AF=0.69;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0015;EUR_AF=0.77;LDAF=0.6949;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56203891 rs3809978 G T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56203898 rs3809977 T G 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56204250 rs3809976 A C 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6966;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56204644 rs12963422 T G 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3267;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56204747 rs3826593 G A 100 PASS AA=g;AC=2;AF=0.81;AFR_AF=0.59;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8097;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56246442 rs12606191 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.33;LDAF=0.3760;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 56247180 rs9958735 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.37;AMR_AF=0.50;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56247567 rs9956630 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9960;ERATE=0.0089;EUR_AF=0.50;LDAF=0.4834;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56247600 rs9944810 C A 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.28;AMR_AF=0.49;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4771;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56274514 rs6566986 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.82;LDAF=0.9118;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56279025 rs6566987 T G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0007;EUR_AF=0.82;LDAF=0.9155;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 56400826 rs28740963 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.30;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2244;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 56586284 rs148024897 C T 100 PASS AA=c;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0013;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56807308 rs3744890 C G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.56;AMR_AF=0.47;AN=2;ASN_AF=0.85;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5894;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56819930 rs3760555 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.18;AMR_AF=0.29;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2381;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 56887507 rs1062557 C A 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.75;AMR_AF=0.59;AN=2;ASN_AF=0.74;AVGPOST=0.9721;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7154;RSQ=0.9469;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +18 56936395 rs7226481 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.20;AN=2;ASN_AF=0.15;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.31;LDAF=0.2336;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-2.37,-0.01,-2.08 +18 57000303 rs2298712 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.46;AMR_AF=0.21;AN=2;ASN_AF=0.27;AVGPOST=0.9986;ERATE=0.0008;EUR_AF=0.31;LDAF=0.3145;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 57000469 rs2298711 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1088;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 57103126 rs72958116 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 57115203 rs1893788 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.73;AMR_AF=0.57;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5456;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 57134152 rs4940876 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 57147390 rs1790508 C G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.76;AMR_AF=0.74;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7255;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 59157764 rs680530 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 59158065 rs681902 T G 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 59166541 rs12964819 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.58;AMR_AF=0.59;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5887;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 59170304 rs595093 C G 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 59174759 rs1943330 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0759;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 59174817 rs1547956 C A 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.63;AMR_AF=0.77;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.83;LDAF=0.7591;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 59203707 rs62097360 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 59751715 rs1560502 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.11;AMR_AF=0.48;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3664;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +18 59805532 rs9959632 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +18 59806190 rs2298779 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.34;LDAF=0.4312;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 59807635 rs12608212 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.61;AVGPOST=0.9489;ERATE=0.0462;EUR_AF=0.38;LDAF=0.4487;RSQ=0.9362;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 59814268 rs9320000 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.41;AMR_AF=0.68;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.62;LDAF=0.5987;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 59814324 rs9320001 G C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.88;AMR_AF=0.78;AN=2;ASN_AF=0.93;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.74;LDAF=0.8297;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 59824490 rs1021953 A T 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.25;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.63;LDAF=0.5927;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 60027149 rs6567271 T A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.69;AMR_AF=0.63;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 60027171 rs6567272 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.69;AMR_AF=0.63;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 60027241 rs1805034 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.69;AMR_AF=0.63;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 60036083 rs8092336 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9777;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 60051941 rs56231704 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.25;LDAF=0.1249;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 60209709 rs17729940 C G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.25;LDAF=0.1221;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 60231851 rs12956093 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.25;LDAF=0.1197;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 60237388 rs8096750 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.61;LDAF=0.8241;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 60241732 rs3744926 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.33;AMR_AF=0.44;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4597;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 60985879 rs1801018 T C 100 PASS AA=T;AC=2;AF=0.28;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.09;AVGPOST=0.9981;ERATE=0.0008;EUR_AF=0.50;LDAF=0.2759;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 61022791 rs2003149 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.42;AMR_AF=0.65;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5565;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 61066463 rs2276317 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6098;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 61067959 rs952245 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.24;AMR_AF=0.54;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5171;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 61156606 rs12454742 G C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.86;AMR_AF=0.64;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6910;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 61160287 rs2289519 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.86;AMR_AF=0.64;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6909;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 61170721 rs1455556 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.35;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0024;EUR_AF=0.70;LDAF=0.5767;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 61170782 rs1455555 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.49;LDAF=0.3994;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 61170925 rs8093128 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9990;RSQ=0.6605;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 61261540 rs11152395 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.91;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 61261565 rs11152396 C G 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.65;AMR_AF=0.78;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7797;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 61264298 rs1020694 G A 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.94;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8482;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 61264468 rs1020693 C T 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.67;AMR_AF=0.78;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7838;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 61309139 rs2518060 G A 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9933;ERATE=0.0149;EUR_AF=0.16;LDAF=0.1170;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 61310374 rs2687472 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1472;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.66 +18 61322849 rs61703421 G C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.26;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1801;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 61322995 rs1065205 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.10;AMR_AF=0.19;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.09;LDAF=0.1913;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 61323012 rs3180227 C G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9957;ERATE=0.0016;EUR_AF=0.16;LDAF=0.1407;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 61324033 rs3786333 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.33;AN=2;ASN_AF=0.60;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.26;LDAF=0.3866;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 61326597 rs8085479 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9910;RSQ=0.9239;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +18 61326602 rs8085482 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9936;RSQ=0.8523;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +18 61326609 rs8089201 T G 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9931;RSQ=0.9219;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +18 61465810 rs1720858 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.73;AMR_AF=0.57;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6119;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 61647069 rs1944270 G A 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.64;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.30;LDAF=0.3455;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 61654463 rs3826616 A G 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.44;AMR_AF=0.64;AN=2;ASN_AF=0.56;AVGPOST=0.9957;ERATE=0.0766;EUR_AF=0.57;LDAF=0.5493;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0493;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 63477206 rs17075229 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.07;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0219;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 63489378 rs8097752 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.65;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8958;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 63525204 rs144281309 T C 100 PASS AA=T;AC=1;AF=0.0027;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 63530016 rs2291343 A G 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.28;AMR_AF=0.76;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6792;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 63530140 rs17711596 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0398;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 64176269 rs3764472 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.05;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0726;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 64176365 rs1055335 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2500;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 65179829 rs2279269 G A 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4694;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 66367607 rs72955911 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.22;LDAF=0.1092;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 66504093 rs485613 A C 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.70;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9282;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 66504459 rs572020 A T 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.70;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9287;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 66513615 rs2187094 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.08;AMR_AF=0.43;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3891;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 66513662 rs1977942 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.68;AMR_AF=0.54;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5497;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 66678131 rs7234663 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +18 67345034 rs8099030 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.61;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8066;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 67365668 rs4426448 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.43;AMR_AF=0.35;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5087;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 67406349 rs139161708 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 67531642 rs763361 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.26;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.51;LDAF=0.4931;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 67563309 rs1630425 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9721;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +18 67613926 rs10782036 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9185;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 67718688 rs4891392 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.37;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8303;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 67741117 rs1369292 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.23;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7715;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 67742801 rs285228 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.58;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8852;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 67809647 rs11665653 A C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.46;AMR_AF=0.78;AN=2;ASN_AF=0.84;AVGPOST=0.9224;ERATE=0.0889;EUR_AF=0.81;LDAF=0.7125;RSQ=0.8515;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.00,-2.64 +18 67860719 rs283250 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9614;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 67871343 rs3911730 A C 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.19;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7651;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 70209321 rs7237888 C A 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.21;AMR_AF=0.85;AN=2;ASN_AF=0.38;AVGPOST=0.9888;ERATE=0.0008;EUR_AF=0.93;LDAF=0.6100;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.73,-0.09 +18 70417396 rs922999 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 70532840 rs10164255 T G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7352;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 71749322 rs112618061 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0143;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 71930734 rs2032262 T C 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9469;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 71930758 rs2032263 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.33;AMR_AF=0.64;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5562;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 72103782 rs2278154 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.35;AMR_AF=0.32;AN=2;ASN_AF=0.27;AVGPOST=0.9973;ERATE=0.0015;EUR_AF=0.37;LDAF=0.3309;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.04 +18 72109174 rs1559805 C A 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.35;AMR_AF=0.54;AN=2;ASN_AF=0.74;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5103;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 72226539 rs12607796 T C 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.59;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.80;LDAF=0.7903;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 72228124 rs4263028 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9861;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 72228269 rs4329999 G A 100 PASS AA=g;AC=1;AF=0.30;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.51;AVGPOST=0.9987;ERATE=0.0009;EUR_AF=0.27;LDAF=0.2967;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 72234635 rs12960862 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.32;AMR_AF=0.47;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4711;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 72250762 rs11659237 T C 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.39;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6156;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 72343008 rs7243081 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9928;RSQ=0.9425;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 72347482 rs12327359 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.70;AMR_AF=0.38;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4096;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 72593118 rs2628126 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9503;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.27,-0.00 +18 72776121 rs3744913 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.55;AMR_AF=0.78;AN=2;ASN_AF=0.93;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.88;LDAF=0.8051;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +18 72914280 rs7230037 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.05;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3585;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 72997677 rs3826609 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2175;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 72998004 rs3744908 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2806;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 72998268 rs3744909 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.41;LDAF=0.2934;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 72998886 rs3809997 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.35;AMR_AF=0.42;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.41;LDAF=0.3348;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 72999359 rs55679337 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.35;LDAF=0.2564;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 74563709 rs201343231 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.26;AN=2;ASN_AF=0.26;AVGPOST=0.9535;ERATE=0.1253;EUR_AF=0.20;LDAF=0.2286;RSQ=0.8739;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 74611127 rs608433 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9265;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 74680259 rs657066 C T 100 PASS AA=c;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9091;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 74692336 rs9199 A G 100 PASS AA=A;AC=2;AF=0.31;AFR_AF=0.19;AMR_AF=0.34;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3080;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 74778391 rs117933381 T A 100 PASS AA=T;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0036;RSQ=0.9681;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 74962645 rs5374 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.34;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=0.65;LDAF=0.5098;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 74980601 rs77169818 A T 100 PASS AA=A;AC=1;AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.06;LDAF=0.0545;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 74980809 rs5376 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.68;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9240;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 76753588 rs7240860 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.32;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9905;ERATE=0.0013;EUR_AF=0.83;LDAF=0.7449;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +18 76753768 rs2447437 C G 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.58;AMR_AF=0.83;AN=2;ASN_AF=0.89;AVGPOST=0.9025;ERATE=0.0060;EUR_AF=0.83;LDAF=0.7545;RSQ=0.8012;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.950:-3.12,-0.47,-0.18 +18 76754466 rs2472644 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.59;AMR_AF=0.78;AN=2;ASN_AF=0.93;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.85;LDAF=0.7983;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +18 77013422 rs199718576 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8999;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:0.900:-5.00,0.00,-5.00 +18 77067000 rs59800543 T G 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3908;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 77107934 rs9965202 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0024;EUR_AF=0.84;LDAF=0.9030;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 77137202 rs1110784 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.96;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9237;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 77171061 rs2230112 T G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.16;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9944;ERATE=0.0014;EUR_AF=0.70;LDAF=0.6272;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 77458037 rs2242174 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.40;AN=2;ASN_AF=0.39;AVGPOST=0.9987;ERATE=0.0006;EUR_AF=0.37;LDAF=0.3095;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 77474626 rs144647072 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0154;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 77513721 rs626169 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.66;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9197;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 77797321 rs748337 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.60;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7870;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 77798461 rs3744870 C A 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.42;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.9991;ERATE=0.0013;EUR_AF=0.45;LDAF=0.5530;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 77805856 rs3744872 A C 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.28;AMR_AF=0.44;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3665;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 77805949 rs3744873 A C 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.21;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2317;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 77894844 rs3744877 G A 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.16;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=0.9987;ERATE=0.0125;EUR_AF=0.49;LDAF=0.4398;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +18 77896242 rs3826595 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2541;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +18 77918074 rs199834037 G A 100 PASS AA=G;AC=1;AF=0.0023;AFR_AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=0.9974;ERATE=0.0016;LDAF=0.0028;RSQ=0.6627;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +18 77918221 rs2280349 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.47;AVGPOST=0.9903;ERATE=0.0044;EUR_AF=0.08;LDAF=0.2138;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 65632 rs7207457 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.68;AMR_AF=0.48;AN=2;ASN_AF=0.56;AVGPOST=0.9703;ERATE=0.0092;EUR_AF=0.33;LDAF=0.4957;RSQ=0.9590;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.650:-5.00,-0.93,-0.05 +17 463843 rs741677 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.73;AMR_AF=0.51;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 465775 rs2075443 G A 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.57;AMR_AF=0.41;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3209;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 505162 rs4968055 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9662;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 526907 rs16954056 G T 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1348;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 617869 rs11558129 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.23;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1362;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 648186 rs7813 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.87;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6874;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 648498 rs2740349 C T 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.96;AMR_AF=0.81;AN=2;ASN_AF=0.88;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8743;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 649547 rs910925 G C 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.88;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.59;LDAF=0.6892;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 649935 rs2740348 G C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.96;AMR_AF=0.81;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8752;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 694847 rs34081574 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.01;LDAF=0.0082;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 708264 rs183442140 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.08;AVGPOST=0.9768;ERATE=0.0008;EUR_AF=0.10;LDAF=0.0797;RSQ=0.8851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.550:-0.48,-0.48,-0.48 +17 902869 rs12941159 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.21;AN=2;ASN_AF=0.0017;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.30;LDAF=0.1504;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 909451 rs2586306 A T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.30;AVGPOST=0.9962;ERATE=0.0030;EUR_AF=0.49;LDAF=0.4330;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 910401 rs2586305 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.29;AMR_AF=0.50;AN=2;ASN_AF=0.24;AVGPOST=0.9943;ERATE=0.0024;EUR_AF=0.46;LDAF=0.3684;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.150:-5.00,-2.07,-0.00 +17 912914 rs12600864 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.22;LDAF=0.1623;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 916446 rs9894835 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9970;ERATE=0.0034;EUR_AF=0.28;LDAF=0.2478;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 953456 rs2257540 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.54;AN=2;ASN_AF=0.45;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.61;LDAF=0.4855;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 953737 rs2257222 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9946;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3122;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 960221 rs2304959 C G 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.68;AMR_AF=0.65;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7322;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 961304 rs2260448 C A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.80;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9988;ERATE=0.0016;EUR_AF=0.78;LDAF=0.8334;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 970413 rs2262150 C T 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.78;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9054;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 975804 rs62067901 C T 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0831;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.14 +17 975830 rs77792616 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0923;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0111;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +17 1183354 rs6502774 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.93;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9825;ERATE=0.0038;EUR_AF=0.73;LDAF=0.8436;RSQ=0.9517;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1183464 rs6502776 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=0.9928;ERATE=0.0020;EUR_AF=0.74;LDAF=0.7878;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1265325 rs3752827 T A 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.32;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9786;ERATE=0.0141;EUR_AF=0.27;LDAF=0.3342;RSQ=0.9645;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1359363 rs2229075 T G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.93;AMR_AF=0.73;AN=2;ASN_AF=0.51;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.69;LDAF=0.7037;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +17 1371088 rs8069059 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.93;AMR_AF=0.73;AN=2;ASN_AF=0.55;AVGPOST=0.9947;ERATE=0.0027;EUR_AF=0.69;LDAF=0.7122;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +17 1371123 rs8072859 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.93;AMR_AF=0.73;AN=2;ASN_AF=0.55;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7124;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1371393 rs11538161 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0553;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1371818 rs8080389 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1373518 rs9905106 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.90;AMR_AF=0.71;AN=2;ASN_AF=0.40;AVGPOST=0.9841;ERATE=0.0043;EUR_AF=0.68;LDAF=0.6570;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.11,-0.03 +17 1373612 rs8081370 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=1.00;AMR_AF=0.85;AN=2;ASN_AF=0.52;AVGPOST=0.9928;ERATE=0.0011;EUR_AF=0.88;LDAF=0.8073;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.69,-0.10 +17 1374503 rs2302456 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1020;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1377878 rs2286871 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.64;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8277;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1377943 rs2286873 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.71;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.38;LDAF=0.4147;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1381176 rs2286877 A C 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0631;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1381521 rs45456691 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.54;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0036;EUR_AF=0.32;LDAF=0.3611;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1383893 rs12452780 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0936;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1384066 rs4790518 A G 100 PASS AA=a;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9958;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1424948 rs2277669 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.62;AMR_AF=0.48;AN=2;ASN_AF=0.61;AVGPOST=0.9787;ERATE=0.0145;EUR_AF=0.52;LDAF=0.5607;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1494567 rs63598260 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.11;AMR_AF=0.36;AN=2;ASN_AF=0.15;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.54;LDAF=0.3125;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1495023 rs2002673 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=0.9689;ERATE=0.0039;EUR_AF=0.05;LDAF=0.1547;RSQ=0.9253;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.900:-0.48,-0.48,-0.48 +17 1516480 rs7219369 T C 100 PASS AA=t;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9625;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1538546 rs4790250 C T 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.98;AN=2;ASN_AF=0.93;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9093;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +17 1538628 rs3744644 C G 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.98;AN=2;ASN_AF=0.93;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9110;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 1538714 rs61738531 T G 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1542153 rs2272012 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.46;AMR_AF=0.69;AN=2;ASN_AF=0.89;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6679;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 1542190 rs2272011 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.55;AMR_AF=0.68;AN=2;ASN_AF=0.89;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6799;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1543182 rs144103456 C T 100 PASS AA=c;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0083;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1564251 rs199732661 T C 100 PASS AA=t;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1586998 rs75670228 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0188;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1648502 rs2070863 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1932;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.75,-0.08,-5.00 +17 1657653 rs1057335 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1644;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1673104 rs11658342 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2611;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1673276 rs1136287 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.86;AMR_AF=0.62;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.63;LDAF=0.6476;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1674434 rs1804145 C G 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0165;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1675127 rs4274474 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.89;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 1675378 rs12103559 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.29;AMR_AF=0.13;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1403;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1678338 rs3891224 A T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.43;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1723;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1679805 rs2071022 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.92;AMR_AF=0.71;AN=2;ASN_AF=0.78;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7939;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1680002 rs6828 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.92;AMR_AF=0.71;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7944;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1684605 rs58337165 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.32;AMR_AF=0.12;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1453;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1684772 rs7224977 T C 100 PASS AA=t;AC=2;AF=0.79;AFR_AF=0.92;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7934;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +17 1686410 rs9902398 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.92;AMR_AF=0.71;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7942;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1687796 rs3815612 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.93;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7953;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1690303 rs35569587 A T 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.26;AN=2;ASN_AF=0.23;AVGPOST=0.9930;ERATE=0.0019;EUR_AF=0.40;LDAF=0.2826;RSQ=0.9891;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1690752 rs11549830 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.46;AMR_AF=0.42;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0017;EUR_AF=0.35;LDAF=0.4361;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1703543 rs3809875 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.41;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2806;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1703982 rs9913923 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.27;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1221;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1704296 rs7224496 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3395;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1707893 rs8072508 T A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.56;AMR_AF=0.30;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3168;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1715435 rs7503422 G A 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.70;AMR_AF=0.59;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6467;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1731268 rs8067660 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.66;AMR_AF=0.59;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.75;LDAF=0.6362;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 1733399 rs5030749 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.35;AVGPOST=0.9858;ERATE=0.0012;EUR_AF=0.74;LDAF=0.5838;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +17 1748028 rs4790827 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.77;AMR_AF=0.84;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8391;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1840468 rs9903800 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.75;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=0.9931;ERATE=0.0005;EUR_AF=0.76;LDAF=0.7072;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 1939971 rs61753099 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0510;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1943888 rs2236375 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.85;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8396;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1945041 rs7216804 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.85;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=0.76;LDAF=0.8369;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 1968983 rs2232486 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.85;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8313;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 2186100 rs749240 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.68;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3985;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 2196150 rs216205 C T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.70;LDAF=0.7412;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2202520 rs202060632 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.8313;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2202943 rs216196 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3314;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2203167 rs216195 T G 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3784;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2203348 rs216194 T C 100 PASS AA=C;AC=1;AF=0.92;AFR_AF=1.00;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.83;LDAF=0.9204;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2203453 rs216193 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.36;AMR_AF=0.62;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5882;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2265113 rs2429906 C A 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.54;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3633;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2266709 rs2003969 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.77;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6116;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2266799 rs745400 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.48;AMR_AF=0.38;AN=2;ASN_AF=0.74;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.44;LDAF=0.5199;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2266812 rs2003968 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.53;AMR_AF=0.38;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5320;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2268311 rs2248821 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.52;AMR_AF=0.38;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5275;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2268681 rs2429908 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.52;AMR_AF=0.38;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5289;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.82 +17 2573652 rs3213696 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.83;AMR_AF=0.93;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9086;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 2595964 rs2302199 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.53;AMR_AF=0.39;AN=2;ASN_AF=0.50;AVGPOST=0.9624;ERATE=0.0162;EUR_AF=0.41;LDAF=0.4593;RSQ=0.9462;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2598627 rs1003398 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9889;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 2598639 rs1003399 C G 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.21;AMR_AF=0.62;AN=2;ASN_AF=0.54;AVGPOST=0.9950;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4886;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 2601273 rs147854747 G A 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.0028;AN=2;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0033;RSQ=0.8110;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.850:-3.44,-0.00,-5.00 +17 2606715 rs1065479 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.27;AMR_AF=0.62;AN=2;ASN_AF=0.55;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.57;LDAF=0.5069;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 2868935 rs12950923 T C 100 PASS AA=c;AC=2;AF=0.81;AFR_AF=0.70;AMR_AF=0.85;AN=2;ASN_AF=0.86;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8133;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 2894569 rs8071529 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.13;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.31;LDAF=0.2287;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 2923767 rs2304982 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.84;AMR_AF=0.93;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9004;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.91,-0.01 +17 2923933 rs11652061 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.26;AMR_AF=0.16;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1512;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.86 +17 2929286 rs4072679 A C 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.70;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6849;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 2929674 rs12941934 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.41;AMR_AF=0.69;AN=2;ASN_AF=0.66;AVGPOST=0.9976;ERATE=0.0007;EUR_AF=0.59;LDAF=0.5822;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.09,-0.00,-3.70 +17 3100802 rs2241094 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1124;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3100827 rs2241093 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3350;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3101076 rs2241092 G C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.86;AMR_AF=0.78;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8542;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3101578 rs2241091 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3259;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3101590 rs2469791 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.21;AMR_AF=0.17;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1551;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3101691 rs12150427 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3350;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3119008 rs4325604 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8199;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3119673 rs769426 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.10;AMR_AF=0.18;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1466;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3119767 rs769427 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.36;AMR_AF=0.32;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3399;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3119871 rs17174920 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.36;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=0.9977;ERATE=0.0022;EUR_AF=0.49;LDAF=0.3435;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3324004 rs146946227 C T 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.86;AMR_AF=0.74;AN=2;ASN_AF=0.59;AVGPOST=0.9612;ERATE=0.0147;EUR_AF=0.76;LDAF=0.7294;RSQ=0.9268;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.66,-0.11 +17 3324086 rs227788 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.84;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=0.9510;ERATE=0.0195;EUR_AF=0.88;LDAF=0.8937;RSQ=0.7869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.65,-0.11 +17 3324255 rs769432 C T 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.42;AMR_AF=0.38;AN=2;ASN_AF=0.14;AVGPOST=0.9793;ERATE=0.0075;EUR_AF=0.53;LDAF=0.3793;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.71,-0.09 +17 3336162 rs11867612 T C 100 PASS AA=.;AC=2;AF=0.22;AFR_AF=0.07;AMR_AF=0.27;AN=2;ASN_AF=0.0035;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2182;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3336260 rs61739591 A G 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.06;AMR_AF=0.24;AN=2;ASN_AF=0.0035;AVGPOST=0.9922;ERATE=0.0033;EUR_AF=0.40;LDAF=0.1933;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3337057 rs769431 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.75;AMR_AF=0.80;AN=2;ASN_AF=0.71;AVGPOST=0.9949;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7509;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +17 3352309 rs11556563 T C 100 PASS AA=t;AC=2;AF=0.22;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2161;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3397702 rs12948217 C T 100 PASS AA=t;AC=1;AF=0.21;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2084;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3427442 rs62069862 A G 100 PASS AA=a;AC=2;AF=0.26;AFR_AF=0.06;AMR_AF=0.41;AN=2;ASN_AF=0.03;AVGPOST=0.9938;ERATE=0.0008;EUR_AF=0.47;LDAF=0.2567;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0192;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3430271 rs11657715 A G 100 PASS AA=N;AC=1;AF=0.48;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4814;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3435935 rs454738 C A 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.47;AMR_AF=0.60;AN=2;ASN_AF=0.75;AVGPOST=0.9988;ERATE=0.0015;EUR_AF=0.63;LDAF=0.6204;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3436080 rs395357 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.31;AMR_AF=0.31;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3531;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3445901 rs11078458 T G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.26;AMR_AF=0.71;AN=2;ASN_AF=0.74;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.59;LDAF=0.5761;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3446885 rs322937 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2609;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3447914 rs1039519 C T 100 PASS AA=c;AC=1;AF=0.66;AFR_AF=0.55;AMR_AF=0.73;AN=2;ASN_AF=0.80;AVGPOST=0.9966;ERATE=0.0063;EUR_AF=0.59;LDAF=0.6616;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3448453 rs113563330 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0056;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3458072 rs322965 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0017;EUR_AF=1.00;LDAF=0.9957;RSQ=0.9448;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3475367 rs224548 T G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.52;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9977;ERATE=0.0007;EUR_AF=1.00;LDAF=0.8874;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 3475405 rs224549 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.52;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9796;ERATE=0.0064;EUR_AF=0.99;LDAF=0.8741;RSQ=0.9497;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3475564 rs224550 C T 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.49;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9913;ERATE=0.0019;EUR_AF=0.98;LDAF=0.8671;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3480396 rs8078936 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.11;AMR_AF=0.38;AN=2;ASN_AF=0.53;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3667;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3480447 rs8065080 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.11;AMR_AF=0.39;AN=2;ASN_AF=0.60;AVGPOST=0.9972;ERATE=0.0005;EUR_AF=0.42;LDAF=0.3902;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3493200 rs222747 C G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.88;AMR_AF=0.75;AN=2;ASN_AF=0.46;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7010;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +17 3493533 rs161387 A G 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3514028 rs224496 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3558417 rs459613 C G 100 PASS AA=-;AC=2;AF=0.87;AFR_AF=0.51;AMR_AF=0.96;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3558695 rs457419 A G 100 PASS AA=a;AC=1;AF=0.31;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.18;AVGPOST=0.9970;ERATE=0.0005;EUR_AF=0.48;LDAF=0.3101;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3561396 rs161400 C T 100 PASS AA=c;AC=2;AF=0.84;AFR_AF=0.50;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8400;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3563963 rs2873624 C G 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.48;AVGPOST=0.9932;ERATE=0.0023;EUR_AF=0.20;LDAF=0.2454;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3567461 rs2235107 G A 100 PASS AA=-;AC=2;AF=0.81;AFR_AF=0.80;AMR_AF=0.87;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8113;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3568012 rs8278 A G 100 PASS AA=a;AC=2;AF=0.81;AFR_AF=0.80;AMR_AF=0.87;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8112;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3620138 rs2293881 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.79;AMR_AF=0.46;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5653;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3627473 rs9907144 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.65;AMR_AF=0.39;AN=2;ASN_AF=0.34;AVGPOST=0.9931;ERATE=0.0008;EUR_AF=0.55;LDAF=0.4911;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.62 +17 3628362 rs3809806 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.68;AMR_AF=0.39;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4981;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3631241 rs2976230 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.64;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2756;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3631473 rs7219600 C G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.73;AMR_AF=0.29;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3410;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3635645 rs170209 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.54;AVGPOST=0.9979;ERATE=0.0126;EUR_AF=0.59;LDAF=0.4831;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3635768 rs3744678 A C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.66;AMR_AF=0.33;AN=2;ASN_AF=0.16;AVGPOST=0.9981;ERATE=0.0225;EUR_AF=0.20;LDAF=0.3170;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0112;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3649214 rs1183610 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.92;AMR_AF=0.81;AN=2;ASN_AF=0.48;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.83;LDAF=0.7538;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3657159 rs2272606 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.75;AMR_AF=0.58;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5822;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3657175 rs220479 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7399;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 3665160 rs220471 C G 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.81;AMR_AF=0.57;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5827;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.59,-0.00 +17 3704483 rs3809805 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.26;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1592;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3775848 rs7214723 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.09;AMR_AF=0.51;AN=2;ASN_AF=0.39;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3561;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3775916 rs7214864 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.45;AMR_AF=0.77;AN=2;ASN_AF=0.39;AVGPOST=0.9990;ERATE=0.0007;EUR_AF=0.80;LDAF=0.6109;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3801080 rs711174 C T 100 PASS AA=C;AC=2;AF=0.22;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2193;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +17 3828702 rs887387 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.19;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=0.9960;ERATE=0.0055;EUR_AF=0.35;LDAF=0.3160;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3833563 rs12453032 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.56;AVGPOST=0.9936;ERATE=0.0022;EUR_AF=0.10;LDAF=0.2107;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-3.08,-0.47,-0.18 +17 3921307 rs2247194 C G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.82;AMR_AF=0.51;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4881;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3922918 rs711178 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5006;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3947644 rs781831 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.82;AMR_AF=0.54;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5137;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3953083 rs781853 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.78;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4556;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3953102 rs781852 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.82;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.40;LDAF=0.4661;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3961489 rs781839 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.79;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4589;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3962450 rs9900661 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2084;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3966064 rs781825 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.82;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4667;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3976075 rs781820 C G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.82;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4676;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3977532 rs34760976 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0022;EUR_AF=0.11;LDAF=0.0975;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3978531 rs34356467 G T 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1874;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3979949 rs7207986 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.20;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3980318 rs897026 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.82;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9987;ERATE=0.0009;EUR_AF=0.41;LDAF=0.4692;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-1.77,-0.01 +17 3981148 rs8074454 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.47;AMR_AF=0.30;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3985832 rs2727061 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.18;AMR_AF=0.56;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5324;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.90,-0.06,-5.00 +17 3989968 rs2727060 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.18;AMR_AF=0.56;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5343;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3991943 rs67005107 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.26;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1952;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 3994170 rs2727075 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.18;AMR_AF=0.56;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5343;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 3999199 rs12947597 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1737;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4015916 rs201639173 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4015997 rs58625333 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.33;AMR_AF=0.29;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2798;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4027392 rs7208760 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9346;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 4045809 rs4239043 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9956;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9672;RSQ=0.9526;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.67,-0.01 +17 4088291 rs2020118 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.47;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.91;LDAF=0.8098;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4145774 rs12944876 G A 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.23;AMR_AF=0.45;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3257;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4349508 rs56005249 G A 100 PASS AA=A;AC=2;AF=0.12;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=0.9987;ERATE=0.0014;EUR_AF=0.16;LDAF=0.1168;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4350182 rs2047233 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=0.20;AVGPOST=0.9987;ERATE=0.0017;EUR_AF=0.88;LDAF=0.7290;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4351640 rs884250 G A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.81;AMR_AF=0.88;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.87;LDAF=0.6897;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +17 4352636 rs34457931 G A 100 PASS AA=g;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.13;LDAF=0.0888;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4416638 rs9894697 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3125;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4436005 rs9892232 T C 100 PASS AA=N;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9866;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4439501 rs1076071 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9839;ERATE=0.0048;EUR_AF=1.00;LDAF=0.9569;RSQ=0.8660;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4439532 rs1076072 T C 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.52;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=0.9808;ERATE=0.0128;EUR_AF=0.66;LDAF=0.7243;RSQ=0.9688;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4448868 rs149496421 C T 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.01;LDAF=0.0070;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4455166 rs3816686 A G 100 PASS AA=a;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.56;AVGPOST=0.9977;ERATE=0.0008;EUR_AF=0.20;LDAF=0.2928;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4455500 rs7206974 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9935;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0093;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4458598 rs3809849 G C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9759;ERATE=0.0064;EUR_AF=0.22;LDAF=0.2192;RSQ=0.9465;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +17 4461748 rs7215121 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.36;AMR_AF=0.36;AN=2;ASN_AF=0.73;AVGPOST=0.9884;ERATE=0.0005;EUR_AF=0.38;LDAF=0.4657;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4463023 rs11657054 G A 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.60;AMR_AF=0.79;AN=2;ASN_AF=0.88;AVGPOST=0.9957;ERATE=0.0011;EUR_AF=0.77;LDAF=0.7607;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4463699 rs7216284 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=0.9987;ERATE=0.0061;EUR_AF=0.27;LDAF=0.1809;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4463796 rs7216474 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1397;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4495682 rs4790654 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.18;LDAF=0.1670;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4497084 rs9908079 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9976;ERATE=0.0037;EUR_AF=0.29;LDAF=0.1746;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4497160 rs8080130 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.56;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.64;LDAF=0.6921;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4498611 rs12103697 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9985;ERATE=0.0007;EUR_AF=0.31;LDAF=0.1783;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4498641 rs12939239 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=0.9935;ERATE=0.0025;EUR_AF=0.13;LDAF=0.1406;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4535385 rs2619112 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.55;AMR_AF=0.54;AN=2;ASN_AF=0.57;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5532;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4536241 rs743646 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0612;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4620497 rs7208257 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.77;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9131;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4622638 rs1045280 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.38;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6731;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4637886 rs1051009 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.02;AMR_AF=0.36;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3150;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4638484 rs1876444 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5323;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4638563 rs2277680 G A 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.30;AMR_AF=0.45;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4506;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +17 4638737 rs1050998 A G 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.30;AMR_AF=0.45;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4515;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4641755 rs1050997 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.40;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6591;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4642069 rs2250333 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.70;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7168;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4645324 rs3826517 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.45;LDAF=0.2692;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4648175 rs61743945 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.0040;LDAF=0.0073;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4648262 rs58866259 T G 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.33;AMR_AF=0.09;AN=2;ASN_AF=0.39;AVGPOST=0.9985;ERATE=0.0104;EUR_AF=0.06;LDAF=0.2116;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4684095 rs17765153 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.48;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3489;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4686340 rs3853643 T G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.72;AMR_AF=0.87;AN=2;ASN_AF=0.87;AVGPOST=0.9823;ERATE=0.0115;EUR_AF=0.82;LDAF=0.8210;RSQ=0.9683;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4686341 rs3853644 T G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.74;AMR_AF=0.88;AN=2;ASN_AF=0.87;AVGPOST=0.9827;ERATE=0.0081;EUR_AF=0.83;LDAF=0.8276;RSQ=0.9643;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4688996 rs2279962 A C 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4811;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4689313 rs2279961 G C 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9987;ERATE=0.0025;EUR_AF=0.10;LDAF=0.1101;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4689572 rs4790706 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.42;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5078;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4692559 rs2304969 G T 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.15;AMR_AF=0.16;AN=2;ASN_AF=0.48;AVGPOST=0.9902;ERATE=0.0007;EUR_AF=0.17;LDAF=0.2447;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 4693054 rs12951761 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.75;AMR_AF=0.51;AN=2;ASN_AF=0.49;AVGPOST=0.9971;ERATE=0.0015;EUR_AF=0.45;LDAF=0.5392;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.52 +17 4693170 rs34850425 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9940;RSQ=0.9227;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.96,-0.05 +17 4693342 rs35910358 C A 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9867;ERATE=0.0010;EUR_AF=0.99;LDAF=0.9808;RSQ=0.7436;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-3.08,-0.47,-0.18 +17 4693508 rs34421346 G C 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9624;ERATE=0.0031;EUR_AF=1.00;LDAF=0.9669;RSQ=0.5281;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:1.850:-0.48,-0.48,-0.48 +17 4699552 rs3169950 G A 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.26;AMR_AF=0.42;AN=2;ASN_AF=0.08;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.44;LDAF=0.3002;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +17 4712757 rs2286671 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.32;AMR_AF=0.64;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4328;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4718776 rs1132448 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.42;AMR_AF=0.75;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.72;LDAF=0.6348;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4720469 rs1052748 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.14;AMR_AF=0.44;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2912;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4845768 rs238247 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.14;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.3743;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4849191 rs200415929 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0006;RSQ=0.8138;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4856376 rs238238 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.59;AMR_AF=0.77;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5982;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4856580 rs238239 T C 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.17;AMR_AF=0.49;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.55;LDAF=0.3487;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4863410 rs238224 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.84;AMR_AF=0.86;AN=2;ASN_AF=0.48;AVGPOST=0.9918;ERATE=0.0035;EUR_AF=0.83;LDAF=0.7411;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4875566 rs238230 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.80;AMR_AF=0.67;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5941;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4881776 rs376516 C G 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.69;AMR_AF=0.66;AN=2;ASN_AF=0.38;AVGPOST=0.9953;ERATE=0.0041;EUR_AF=0.57;LDAF=0.5627;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4882952 rs1859434 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7472;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4883818 rs238234 C G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7470;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4886037 rs238232 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7477;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4907989 rs391271 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.12;LDAF=0.0596;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 4926882 rs346828 A G 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.56;AMR_AF=0.76;AN=2;ASN_AF=0.66;AVGPOST=0.9974;ERATE=0.0017;EUR_AF=0.71;LDAF=0.6728;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4936972 rs346821 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.73;AMR_AF=0.66;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5545;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 4937575 rs346822 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=0.82;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9263;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 5036281 rs76236903 G C 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.43;AN=2;ASN_AF=0.38;AVGPOST=0.9853;ERATE=0.1596;EUR_AF=0.41;LDAF=0.3819;RSQ=0.9401;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 5036849 rs3867174 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.57;AMR_AF=0.67;AN=2;ASN_AF=0.36;AVGPOST=0.9463;ERATE=0.0687;EUR_AF=0.69;LDAF=0.5722;RSQ=0.9316;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.43,-0.02 +17 5042894 rs8073787 T C 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.57;LDAF=0.7253;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 5045283 rs140256080 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0547;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.47,-0.00,-5.00 +17 5048207 rs2304447 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.68;AMR_AF=0.71;AN=2;ASN_AF=0.35;AVGPOST=0.9787;ERATE=0.0164;EUR_AF=0.75;LDAF=0.6187;RSQ=0.9717;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:1.850:-5.00,-0.68,-0.10 +17 5058808 rs9899177 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.22;AMR_AF=0.61;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.3972;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 5072316 rs11658877 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.16;AMR_AF=0.62;AN=2;ASN_AF=0.17;AVGPOST=0.9840;ERATE=0.0122;EUR_AF=0.61;LDAF=0.3991;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 5085893 rs4115657 C T 100 PASS AA=c;AC=2;AF=0.38;AFR_AF=0.15;AMR_AF=0.60;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.59;LDAF=0.3823;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 5087040 rs9908414 A G 100 PASS AA=a;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.43;AN=2;ASN_AF=0.09;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2764;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 5126674 rs2641256 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.29;AMR_AF=0.65;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.65;LDAF=0.4835;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 5126689 rs2585271 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.16;AMR_AF=0.60;AN=2;ASN_AF=0.20;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.59;LDAF=0.3918;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 5264916 rs34594998 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.20;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0828;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 5271804 rs7213832 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.21;AMR_AF=0.06;AN=2;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0908;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 5308603 rs3026133 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.89;AMR_AF=0.55;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7345;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 5319808 rs146341032 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0100;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 5326162 rs2189336 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.88;AMR_AF=0.55;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.54;LDAF=0.7281;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 5424376 rs12944976 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2303;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +17 5425077 rs11651270 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.51;AMR_AF=0.39;AN=2;ASN_AF=0.27;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.45;LDAF=0.4061;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 5436263 rs2301582 C T 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.09;AMR_AF=0.34;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2130;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 5485367 rs12150220 A T 100 PASS AA=A;AC=2;AF=0.23;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2313;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +17 5991344 rs2302836 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.15;AMR_AF=0.52;AN=2;ASN_AF=0.81;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5196;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6014176 rs2302837 A G 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.82;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9081;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6021541 rs2302838 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.40;AMR_AF=0.55;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.51;LDAF=0.5805;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6330068 rs2292546 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.73;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.75;LDAF=0.7189;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6330153 rs925616 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.34;AMR_AF=0.29;AN=2;ASN_AF=0.50;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.39;LDAF=0.3899;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6331803 rs8075035 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.49;AMR_AF=0.66;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5932;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6331836 rs12453262 T G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.36;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.61;LDAF=0.5185;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6338284 rs2292543 A G 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.10;AMR_AF=0.01;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0416;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6338293 rs2292544 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.10;AMR_AF=0.01;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0416;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6364753 rs11654099 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.86;LDAF=0.9054;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6373737 rs11654175 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3177;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6381939 rs938288 G A 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.25;AMR_AF=0.50;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4201;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6483046 rs3744720 T C 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.82;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.53;LDAF=0.6580;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6493056 rs367918 T C 100 PASS AA=C;AC=1;AF=0.95;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.81;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9469;RSQ=0.9725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6493198 rs1443417 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.82;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.53;LDAF=0.6573;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6511781 rs4796519 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.74;AMR_AF=0.66;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6387;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6513329 rs2304977 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.31;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.34;LDAF=0.2750;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6515387 rs2289642 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.82;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6577;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6515454 rs2289643 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.37;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5355;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6524298 rs9889363 T A 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3066;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6524358 rs8074991 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.82;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6581;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6531648 rs2072149 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.86;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6668;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6538355 rs2301873 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3615;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6546259 rs2285999 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.90;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7125;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6599288 rs77795940 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6661584 rs4796550 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.84;AMR_AF=0.40;AN=2;ASN_AF=0.63;AVGPOST=0.9962;ERATE=0.0029;EUR_AF=0.35;LDAF=0.5399;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6663895 rs2271231 C G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.73;AMR_AF=0.35;AN=2;ASN_AF=0.54;AVGPOST=0.9955;ERATE=0.0026;EUR_AF=0.31;LDAF=0.4714;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6704121 rs2271233 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0402;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6716385 rs8081510 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6189;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6733672 rs8078571 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.89;AMR_AF=0.46;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5797;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6899559 rs312467 C G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.83;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9753;ERATE=0.0012;EUR_AF=1.00;LDAF=0.9456;RSQ=0.8318;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +17 6900362 rs2070589 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.68;AMR_AF=0.66;AN=2;ASN_AF=0.53;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.60;LDAF=0.6114;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +17 6900383 rs312468 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9588;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.77,-0.01 +17 6902179 rs312470 G A 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.65;AMR_AF=0.66;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7941;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 6902743 rs1042356 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.67;AMR_AF=0.66;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6116;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6902760 rs1126667 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.68;AMR_AF=0.66;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6128;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6905061 rs1042357 T G 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.56;AMR_AF=0.67;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5859;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6909838 rs2307214 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1165;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6920257 rs11078662 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1157;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6929924 rs379478 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9666;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 6941625 rs76070643 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0718;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6945087 rs75493593 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0727;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6945483 rs75418188 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0715;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +17 6945940 rs13342232 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.36;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.03;LDAF=0.1562;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.15,-0.54,-5.00 +17 6946287 rs13342692 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.36;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1565;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6946330 rs117767867 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0710;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +17 6946921 rs2292351 C G 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0710;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 6979280 rs181487113 A G 100 PASS AA=a;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0080;RSQ=0.9776;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7011129 rs530779 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.13;AMR_AF=0.44;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.34;LDAF=0.3354;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7011144 rs62058755 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.18;AMR_AF=0.26;AN=2;ASN_AF=0.31;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2930;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7012073 rs2304980 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.34;AN=2;ASN_AF=0.27;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2333;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7012077 rs2304979 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.27;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2372;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7012079 rs2304978 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.27;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2372;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7127718 rs17671352 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.60;LDAF=0.5205;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7129840 rs35594616 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5210;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7129974 rs2074222 A G 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5203;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7132556 rs222837 C T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.86;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.50;LDAF=0.6335;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7133162 rs222836 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.32;AMR_AF=0.51;AN=2;ASN_AF=0.46;AVGPOST=0.9988;ERATE=0.0037;EUR_AF=0.49;LDAF=0.4479;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7134129 rs222835 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.41;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.56;LDAF=0.5534;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7139238 rs222851 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.62;AMR_AF=0.46;AN=2;ASN_AF=0.61;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.39;LDAF=0.5130;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7150552 rs2074217 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.82;AMR_AF=0.56;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.61;LDAF=0.5936;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7154534 rs414206 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.87;AMR_AF=0.61;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6838;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.41,-0.22,-2.19 +17 7154582 rs3744399 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1050;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.23 +17 7156186 rs2074218 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.37;AMR_AF=0.53;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.61;LDAF=0.4867;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7163739 rs4562 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.87;AMR_AF=0.61;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6850;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7187123 rs5435 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.89;AMR_AF=0.61;AN=2;ASN_AF=0.64;AVGPOST=0.9983;ERATE=0.0020;EUR_AF=0.59;LDAF=0.6760;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7192091 rs222842 C T 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.28;AMR_AF=0.59;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4996;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7192198 rs222841 T G 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.28;AMR_AF=0.59;AN=2;ASN_AF=0.36;AVGPOST=0.9915;ERATE=0.0066;EUR_AF=0.67;LDAF=0.4841;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7193060 rs55781423 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.37;AMR_AF=0.59;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5188;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7193255 rs3744405 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.48;LDAF=0.3919;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7214824 rs11658072 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7217;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7217463 rs11541855 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.51;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5814;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7220697 rs62059198 G T 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.29;LDAF=0.1737;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7221385 rs1127440 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.94;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.57;LDAF=0.7013;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7221544 rs7222233 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.94;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7030;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7221707 rs7216490 G T 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.42;AMR_AF=0.63;AN=2;ASN_AF=0.67;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5591;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7225149 rs3809814 C G 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.10;AMR_AF=0.51;AN=2;ASN_AF=0.47;AVGPOST=0.9886;ERATE=0.0047;EUR_AF=0.47;LDAF=0.3933;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7226957 rs35776863 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9968;ERATE=0.0009;EUR_AF=0.19;LDAF=0.0948;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7228479 rs201566486 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.63;AVGPOST=0.8777;ERATE=0.0535;EUR_AF=0.44;LDAF=0.5250;RSQ=0.8107;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.97 +17 7230845 rs11655578 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1325;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7245371 rs4796407 A G 100 PASS AA=A;AC=2;AF=0.31;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.06;AVGPOST=0.9956;ERATE=0.0019;EUR_AF=0.41;LDAF=0.3101;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7245674 rs8069505 G A 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.21;AMR_AF=0.32;AN=2;ASN_AF=0.03;AVGPOST=0.9982;ERATE=0.0029;EUR_AF=0.38;LDAF=0.2375;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7251605 rs2292066 G C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.62;AMR_AF=0.56;AN=2;ASN_AF=0.23;AVGPOST=0.9984;ERATE=0.0007;EUR_AF=0.61;LDAF=0.5031;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 7254602 rs66687178 T G 100 PASS AA=t;AC=2;AF=0.14;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1437;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +17 7286266 rs1554947 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.05;AMR_AF=0.38;AN=2;ASN_AF=0.51;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.42;LDAF=0.3551;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7286326 rs1554948 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.37;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.44;LDAF=0.3554;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7290821 rs968580 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.17;AMR_AF=0.53;AN=2;ASN_AF=0.64;AVGPOST=0.9969;ERATE=0.0010;EUR_AF=0.55;LDAF=0.4840;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7292107 rs6503018 G A 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.49;AMR_AF=0.80;AN=2;ASN_AF=0.76;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.95;LDAF=0.7709;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7293715 rs3744549 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.45;AMR_AF=0.56;AN=2;ASN_AF=0.28;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.82;LDAF=0.5520;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7297452 rs4613118 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.49;AMR_AF=0.58;AN=2;ASN_AF=0.29;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.82;LDAF=0.5684;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7306727 rs17882626 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1991;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7307287 rs9900153 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.57;AMR_AF=0.59;AN=2;ASN_AF=0.29;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.83;LDAF=0.5895;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.06,-0.86,-5.00 +17 7318396 rs2241233 C T 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.55;AMR_AF=0.89;AN=2;ASN_AF=0.94;AVGPOST=0.9954;ERATE=0.0007;EUR_AF=0.86;LDAF=0.8158;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7319325 rs76733190 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0157;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7324788 rs33989543 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.12;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0864;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7324852 rs34333422 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0867;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7340864 rs34121192 G A 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.19;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=0.9878;ERATE=0.0008;EUR_AF=0.08;LDAF=0.1361;RSQ=0.9609;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.88,-0.06 +17 7350975 rs2302765 T C 100 PASS AA=T;AC=2;AF=0.17;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1726;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7358803 rs7214344 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9684;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7359277 rs2302763 T C 100 PASS AA=T;AC=2;AF=0.17;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1714;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7366651 rs871990 C G 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.11;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9971;ERATE=0.0035;EUR_AF=0.15;LDAF=0.1717;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.70,-0.10 +17 7385454 rs3760422 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.11;AMR_AF=0.25;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1769;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +17 7386055 rs4491591 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9586;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.40,-0.49,-0.17 +17 7400041 rs9890920 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.52;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7637;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7400137 rs9898024 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7402556 rs2277638 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7678;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7402600 rs2228129 T C 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7701;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7403942 rs12936464 A C 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.57;AMR_AF=0.88;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8117;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7404107 rs7217707 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7404209 rs6503030 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7404991 rs2228130 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.75;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9068;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7405074 rs8075218 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7687;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7405937 rs2071504 C T 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1774;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7412403 rs2228133 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0078;EUR_AF=0.09;LDAF=0.1348;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7417086 rs4344809 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7460559 rs4968189 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9818;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7462555 rs11552708 G A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.37;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=0.11;LDAF=0.1723;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.37 +17 7462969 rs3803800 A G 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.29;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=0.9984;ERATE=0.0131;EUR_AF=0.78;LDAF=0.6275;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7477938 rs1057086 G C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.66;AMR_AF=0.83;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8378;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7478402 rs78414518 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0617;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7478498 rs78553499 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1307;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7479892 rs11078698 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0882;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7483915 rs9896688 A T 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1307;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7558895 rs117613045 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7579472 rs1042522 G C 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.33;AMR_AF=0.72;AN=2;ASN_AF=0.61;AVGPOST=0.9973;ERATE=0.0007;EUR_AF=0.72;LDAF=0.6032;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7579619 rs17883323 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=0.9982;ERATE=0.0015;EUR_AF=0.06;LDAF=0.0733;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7579801 rs1642785 G C 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.61;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6372;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7606722 rs7640 C G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.91;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=0.9938;ERATE=0.0050;EUR_AF=0.23;LDAF=0.4286;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7630505 rs11867551 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.18;LDAF=0.1033;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7673928 rs9909288 C G 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.37;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9994;ERATE=0.0018;EUR_AF=0.28;LDAF=0.3420;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7678085 rs79662110 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0106;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7681412 rs7359662 C G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.45;AMR_AF=0.89;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.95;LDAF=0.7867;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7682605 rs17806045 C T 100 PASS AA=c;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.11;AN=2;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.16;LDAF=0.0742;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7700712 rs1565817 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5358;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7720091 rs11078708 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1797;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7720858 rs872345 A T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=0.9962;ERATE=0.0136;EUR_AF=0.17;LDAF=0.2111;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7722365 rs7213894 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.78;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=0.9970;ERATE=0.0005;EUR_AF=0.62;LDAF=0.5891;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +17 7727303 rs143935675 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0124;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7733833 rs34121753 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.60;LDAF=0.3007;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7754993 rs12939056 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.0017;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.59;LDAF=0.2705;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7756284 rs200703724 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9181;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7761926 rs3744252 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0937;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 7811998 rs4239111 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.83;LDAF=0.9178;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7835043 rs76144653 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0019;RSQ=0.9570;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7906519 rs61749665 G T 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.67;AVGPOST=0.9812;ERATE=0.0017;EUR_AF=0.33;LDAF=0.3769;RSQ=0.9711;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-3.11,-0.47,-0.18 +17 7942434 rs73972649 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.42;AMR_AF=0.28;AN=2;ASN_AF=0.27;AVGPOST=0.9838;ERATE=0.0023;EUR_AF=0.32;LDAF=0.3231;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 7942901 rs76589243 C G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9640;ERATE=0.0034;EUR_AF=0.37;LDAF=0.3150;RSQ=0.9335;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|0:1.000:-2.89,-0.26,-0.34 +17 7977105 rs12937410 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8418;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +17 7979463 rs2289586 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.83;AN=2;ASN_AF=0.85;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.81;LDAF=0.8593;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 7983969 rs2304908 G C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.60;AMR_AF=0.42;AN=2;ASN_AF=0.38;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.30;LDAF=0.4094;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 8046772 rs2585405 C G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.74;AMR_AF=0.84;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7705;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8048169 rs2253820 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.54;AMR_AF=0.58;AN=2;ASN_AF=0.30;AVGPOST=0.9888;ERATE=0.0054;EUR_AF=0.84;LDAF=0.5829;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.82 +17 8048283 rs2735611 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.54;AMR_AF=0.59;AN=2;ASN_AF=0.30;AVGPOST=0.9958;ERATE=0.0003;EUR_AF=0.84;LDAF=0.5892;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8050737 rs885747 G C 100 PASS AA=g;AC=1;AF=0.35;AFR_AF=0.50;AMR_AF=0.34;AN=2;ASN_AF=0.11;AVGPOST=0.9971;ERATE=0.0035;EUR_AF=0.45;LDAF=0.3513;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8079029 rs8064449 G C 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.45;AMR_AF=0.65;AN=2;ASN_AF=0.54;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5791;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8092694 rs8531 T G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.30;AVGPOST=0.9899;ERATE=0.0025;EUR_AF=0.84;LDAF=0.5897;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8108331 rs1059476 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.61;AMR_AF=0.82;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7491;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8108339 rs2241909 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.51;AMR_AF=0.68;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6155;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8132763 rs3826543 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.67;AMR_AF=0.66;AN=2;ASN_AF=0.35;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.85;LDAF=0.6471;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8135061 rs3027238 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.98;LDAF=0.9577;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 8137737 rs4792621 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.70;AMR_AF=0.86;AN=2;ASN_AF=0.71;AVGPOST=0.9970;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7952;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +17 8139327 rs4791626 A G 100 PASS AA=g;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9926;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 8141707 rs6503093 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 8157310 rs9891699 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.43;AMR_AF=0.79;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.84;LDAF=0.6792;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8159232 rs7221716 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.70;AMR_AF=0.86;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7929;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8161149 rs4791641 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.22;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3538;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8166378 rs7206953 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.37;AMR_AF=0.71;AN=2;ASN_AF=0.61;AVGPOST=0.9970;ERATE=0.0138;EUR_AF=0.74;LDAF=0.6198;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8167060 rs112902379 C G 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0212;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8167600 rs11078738 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.59;AN=2;ASN_AF=0.26;AVGPOST=0.9974;ERATE=0.0024;EUR_AF=0.78;LDAF=0.5440;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8168224 rs9902252 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.49;AMR_AF=0.59;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5502;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8168805 rs9897842 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.50;AMR_AF=0.61;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.5636;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8169006 rs11655563 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.56;AMR_AF=0.66;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.6261;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8194318 rs72835272 G A 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=0.9911;ERATE=0.0076;EUR_AF=0.44;LDAF=0.2830;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8194319 rs6503098 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.31;AVGPOST=0.9904;ERATE=0.0086;EUR_AF=0.74;LDAF=0.5481;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8216468 rs871841 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.73;AMR_AF=0.62;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6242;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 8219478 rs2270445 A G 100 PASS AA=g;AC=1;AF=0.63;AFR_AF=0.77;AMR_AF=0.63;AN=2;ASN_AF=0.74;AVGPOST=0.9951;ERATE=0.0015;EUR_AF=0.46;LDAF=0.6314;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +17 8224276 rs3744647 T C 100 PASS AA=c;AC=1;AF=0.61;AFR_AF=0.65;AMR_AF=0.68;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6075;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0071;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 8243598 rs73250854 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.17;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0951;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 8243661 rs12601097 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.63;AMR_AF=0.64;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5576;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 8243785 rs12936935 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.63;AMR_AF=0.64;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5576;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 8390733 rs3826463 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.29;AMR_AF=0.60;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.62;LDAF=0.5325;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 8424270 rs8067456 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9840;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 8784149 rs4791764 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.38;AMR_AF=0.24;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0055;EUR_AF=0.27;LDAF=0.2198;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8784361 rs4791765 A G 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.0017;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.30;LDAF=0.2364;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +17 8785087 rs9903447 A C 100 PASS AA=N;AC=1;AF=0.22;AFR_AF=0.45;AMR_AF=0.24;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2238;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8785092 rs9902600 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1747;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8792003 rs9915880 C T 100 PASS AA=c;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.26;AN=2;ASN_AF=0.0017;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2137;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8792029 rs381309 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.71;AMR_AF=0.41;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4081;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8792093 rs16957702 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.26;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8792171 rs11650737 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.26;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2144;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8792514 rs394811 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.71;AMR_AF=0.41;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4081;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 8794014 rs381198 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.66;AMR_AF=0.41;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3994;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 9066248 rs55687153 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0483;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 9066254 rs2286511 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1187;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 9083081 rs9907119 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.33;AMR_AF=0.30;AN=2;ASN_AF=0.14;AVGPOST=0.9965;ERATE=0.0084;EUR_AF=0.36;LDAF=0.2839;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 9086228 rs2302196 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.33;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2939;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 9086293 rs2302197 G C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2921;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 9153861 rs8974 G C 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.29;AMR_AF=0.48;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3794;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +17 9395231 rs9893664 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.50;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7587;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 9471711 rs1133295 T G 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.30;AMR_AF=0.82;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7418;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 9479098 rs7224817 C A 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.29;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.77;LDAF=0.7280;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +17 9515777 rs6503235 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.34;AMR_AF=0.73;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.76;LDAF=0.6065;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 9801547 rs117752682 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.06;AN=2;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0291;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 9820695 rs4791910 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.40;AMR_AF=0.44;AN=2;ASN_AF=0.56;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4957;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10205047 rs62060457 C G 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.44;AMR_AF=0.37;AN=2;ASN_AF=0.22;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3054;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10205067 rs2008528 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10216442 rs4239113 C A 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6670;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10216510 rs4791401 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3470;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10219366 rs2240577 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.90;AMR_AF=0.82;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8282;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10222061 rs2074872 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3492;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.36,-0.00 +17 10223714 rs2074877 T C 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.63;AMR_AF=0.67;AN=2;ASN_AF=0.41;AVGPOST=0.9891;ERATE=0.0074;EUR_AF=0.64;LDAF=0.5813;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10223793 rs35783712 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0229;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 10236465 rs2240579 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.20;AMR_AF=0.58;AN=2;ASN_AF=0.36;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.64;LDAF=0.4579;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-0.06,-0.91,-5.00 +17 10243589 rs4445936 C A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.61;AMR_AF=0.85;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7871;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10243717 rs3760423 G A 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.61;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8044;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10267610 rs4791981 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.20;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1450;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 10297658 rs8069834 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.75;AMR_AF=0.49;AN=2;ASN_AF=0.12;AVGPOST=0.9960;ERATE=0.0065;EUR_AF=0.62;LDAF=0.4960;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 10304261 rs3744552 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.73;AMR_AF=0.49;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4941;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 10309962 rs2024076 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.77;AMR_AF=0.54;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.69;LDAF=0.5444;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 10317831 rs4791406 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.26;AMR_AF=0.51;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5037;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10317842 rs4791407 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.26;AMR_AF=0.51;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5037;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10318636 rs8068729 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.62;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8814;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10346781 rs3744554 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.32;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.37;LDAF=0.5143;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10348354 rs2277649 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.22;AMR_AF=0.45;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4472;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10351327 rs138113590 C A 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10355371 rs11651295 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.47;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4886;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10355763 rs917361 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.33;AMR_AF=0.50;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10357825 rs78433324 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10359782 rs970292 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.31;LDAF=0.1848;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 10362746 rs2058099 A G 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.32;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5143;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10363410 rs3744561 A G 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.33;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5164;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10364191 rs1029665 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.33;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5174;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10399897 rs3744563 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5045;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10400466 rs141906658 G T 100 PASS AA=G;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10404118 rs72816758 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.10;LDAF=0.1379;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10411632 rs35152572 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5056;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10415840 rs2007027 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.68;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8997;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10427924 rs1042236 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.72;AVGPOST=0.9901;ERATE=0.0139;EUR_AF=0.12;LDAF=0.2949;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10432638 rs2277651 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.22;AMR_AF=0.47;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4525;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10434925 rs3744565 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.27;AMR_AF=0.51;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5028;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10446182 rs719277 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.28;AMR_AF=0.52;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10446508 rs11078849 T G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.87;AVGPOST=0.9934;ERATE=0.0057;EUR_AF=0.39;LDAF=0.5217;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10448769 rs11078850 A T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.31;AMR_AF=0.52;AN=2;ASN_AF=0.85;AVGPOST=0.9959;ERATE=0.0029;EUR_AF=0.38;LDAF=0.5077;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10450816 rs12600539 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.38;AMR_AF=0.52;AN=2;ASN_AF=0.87;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.39;LDAF=0.5326;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 10532884 rs12940161 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.27;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.75;LDAF=0.5597;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10535349 rs2239936 C G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.76;AMR_AF=0.70;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7167;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 10535761 rs4792008 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5041;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10536018 rs2285479 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5073;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10541515 rs2285477 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.52;AMR_AF=0.60;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.81;LDAF=0.5941;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10542471 rs2285475 T G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5045;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10542765 rs2285474 A G 100 PASS AA=a;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5045;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10542803 rs2285473 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5045;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10542886 rs2285472 T C 100 PASS AA=t;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5041;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10543463 rs2285469 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5045;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10544018 rs876660 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +17 10544416 rs876657 G T 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10546130 rs2285468 T G 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.37;AMR_AF=0.55;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.78;LDAF=0.5406;RSQ=0.9989;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10548992 rs2239934 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.4995;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10549184 rs2239933 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.4995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10553046 rs1989810 A G 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.37;AMR_AF=0.54;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5393;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10555028 rs2285466 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.74;LDAF=0.4994;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 10614442 rs406446 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.65;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4726;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 10633181 rs3826448 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.66;AMR_AF=0.47;AN=2;ASN_AF=0.55;AVGPOST=0.9824;ERATE=0.0014;EUR_AF=0.47;LDAF=0.5305;RSQ=0.9725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:0.950:-0.06,-0.87,-5.00 +17 11511412 rs4792156 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9932;RSQ=0.9493;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11511457 rs11078022 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.18;AMR_AF=0.54;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4095;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11523082 rs9892256 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11550340 rs11870495 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.35;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2966;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 11583089 rs8071438 T C 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9561;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11604598 rs7214186 T A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.86;AMR_AF=0.96;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9328;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11648332 rs3744578 C T 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.54;AMR_AF=0.81;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7779;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 11648444 rs3744580 T C 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.43;AMR_AF=0.72;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6481;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 11672607 rs61744697 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0791;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 11757556 rs12449553 C G 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.34;AMR_AF=0.54;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4010;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11786951 rs8070256 T C 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3936;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11806266 rs3815269 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.43;AMR_AF=0.88;AN=2;ASN_AF=0.67;AVGPOST=0.9992;ERATE=0.0013;EUR_AF=0.86;LDAF=0.7156;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 11833287 rs2286303 A G 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.08;AMR_AF=0.29;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2330;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 11833365 rs1859887 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=0.9968;ERATE=0.0027;EUR_AF=0.34;LDAF=0.2275;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11835331 rs17612861 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2267;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 11837161 rs12948962 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2267;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 12620761 rs12944823 A G 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.70;AMR_AF=0.68;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7335;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.93 +17 12647490 rs12709295 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.67;AMR_AF=0.79;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7706;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 12862029 rs3213689 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0761;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 12897198 rs200375591 G T 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 12898994 rs2286338 C G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.56;AVGPOST=0.9921;ERATE=0.0404;EUR_AF=0.68;LDAF=0.6029;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 13400153 rs8080565 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0453;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0186;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 13972955 rs8076787 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0398;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 13980058 rs2230351 A T 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 13980350 rs8077302 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.47;AMR_AF=0.51;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.52;LDAF=0.4882;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 14005386 rs2108683 T C 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.77;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9982;ERATE=0.0475;EUR_AF=0.85;LDAF=0.8257;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 14005439 rs2159132 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.38;AVGPOST=0.9961;ERATE=0.0768;EUR_AF=0.57;LDAF=0.4927;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 14095309 rs2230354 A G 100 PASS AA=a;AC=2;AF=0.55;AFR_AF=0.47;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9936;ERATE=0.0015;EUR_AF=0.57;LDAF=0.5519;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.06,-0.00 +17 14095566 rs151441 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.28;AN=2;ASN_AF=0.29;AVGPOST=0.9448;ERATE=0.0753;EUR_AF=0.21;LDAF=0.2427;RSQ=0.8580;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.300:-4.70,-0.61,-0.12 +17 14139191 rs148329066 C G 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9557;ERATE=0.0032;EUR_AF=0.27;LDAF=0.1603;RSQ=0.8644;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.700:-0.48,-0.48,-0.48 +17 14139565 rs4791563 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.74;AMR_AF=0.74;AN=2;ASN_AF=0.71;AVGPOST=0.9670;ERATE=0.0855;EUR_AF=0.70;LDAF=0.7126;RSQ=0.9065;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +17 14139774 rs4791564 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9750;ERATE=0.0035;EUR_AF=1.00;LDAF=0.9748;RSQ=0.6411;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +17 14248423 rs9906855 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.14;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=0.9707;ERATE=0.0271;EUR_AF=0.63;LDAF=0.4789;RSQ=0.9648;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15142755 rs3744333 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0832;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15162389 rs231020 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.81;AMR_AF=0.58;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6157;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 15207364 rs13961 T G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.81;AMR_AF=0.78;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7710;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15217389 rs230897 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.52;AMR_AF=0.43;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5266;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15217437 rs230898 C G 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.25;AMR_AF=0.39;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4152;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15234895 rs7226363 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.14;AMR_AF=0.18;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2001;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15496727 rs79385100 T G 100 PASS AA=t;AC=1;AF=0.18;AFR_AF=0.17;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1819;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15496730 rs8078150 A G 100 PASS AA=N;AC=1;AF=0.34;AFR_AF=0.46;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9940;ERATE=0.0016;EUR_AF=0.25;LDAF=0.3414;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15498181 rs12601532 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.35;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=0.9706;ERATE=0.0237;EUR_AF=0.22;LDAF=0.2996;RSQ=0.9492;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +17 15510856 rs41346256 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.31;AVGPOST=0.9911;ERATE=0.0012;EUR_AF=0.14;LDAF=0.2125;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15510888 rs62070401 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.45;AVGPOST=0.9905;ERATE=0.0006;EUR_AF=0.17;LDAF=0.2610;RSQ=0.9828;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15517237 rs62070406 G C 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9386;ERATE=0.0078;EUR_AF=0.21;LDAF=0.2639;RSQ=0.8776;SNPSOURCE=EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|0:0.600:-0.19,-0.46,-2.41 +17 15517284 rs200934978 G C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=0.8989;ERATE=0.0492;EUR_AF=0.27;LDAF=0.3967;RSQ=0.8652;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-2.09,-0.00,-3.36 +17 15531942 rs62070417 C A 100 PASS AA=.;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.28;AVGPOST=0.9907;ERATE=0.0011;EUR_AF=0.21;LDAF=0.2170;RSQ=0.9764;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-3.02,-0.47,-0.18 +17 15554504 rs4792642 G A 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.27;AMR_AF=0.25;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2473;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 15604444 rs4792655 A G 100 PASS AA=.;AC=1;AF=0.53;AFR_AF=0.45;AMR_AF=0.51;AN=2;ASN_AF=0.61;AVGPOST=0.9888;ERATE=0.0090;EUR_AF=0.55;LDAF=0.5339;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15611495 rs3760299 T C 100 PASS AA=t;AC=1;AF=0.48;AFR_AF=0.58;AMR_AF=0.39;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4835;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15644506 rs11650318 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2646;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15645289 rs17855672 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2642;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15903602 rs758853 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.18;AMR_AF=0.43;AN=2;ASN_AF=0.14;AVGPOST=0.9949;ERATE=0.0004;EUR_AF=0.52;LDAF=0.3313;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +17 15905190 rs3760298 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.45;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.52;LDAF=0.3643;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15961951 rs2157991 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.45;AMR_AF=0.51;AN=2;ASN_AF=0.21;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4367;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15968143 rs2285583 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.88;AMR_AF=0.54;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5544;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 15973844 rs12942295 A T 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.33;AMR_AF=0.45;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3684;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 16229232 rs15739 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.12;AMR_AF=0.47;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3085;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 16323589 rs4273076 C A 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.12;AMR_AF=0.55;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.3967;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 16325968 rs8121 A G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.61;AMR_AF=0.42;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.38;LDAF=0.4065;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 16326005 rs1129235 A C 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.58;AMR_AF=0.41;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3964;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 16326253 rs7225104 G T 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.51;AMR_AF=0.57;AN=2;ASN_AF=0.32;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5171;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +17 16335191 rs34786363 C A 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.30;AMR_AF=0.39;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3295;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 16336992 rs14039 C G 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.33;AMR_AF=0.38;AN=2;ASN_AF=0.25;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3276;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 16527795 rs8065506 C A 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.65;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4294;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 16676047 rs200699778 C T 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=0.9923;ERATE=0.0005;EUR_AF=0.06;LDAF=0.1239;RSQ=0.9717;SNPSOURCE=EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-3.28 +17 16842912 rs11078355 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.60;AMR_AF=0.55;AN=2;ASN_AF=0.79;AVGPOST=0.9979;ERATE=0.0036;EUR_AF=0.37;LDAF=0.5595;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 16842991 rs34562254 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1807;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 16852027 rs2274892 T G 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4159;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 16855878 rs8072293 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.98;AMR_AF=0.77;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8775;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 17035036 rs2271520 A G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.83;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8807;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17046024 rs3744137 C A 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.09;AMR_AF=0.48;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4698;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17062241 rs11551189 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.09;AMR_AF=0.50;AN=2;ASN_AF=0.69;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4801;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17118442 rs34235236 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.0017;AVGPOST=0.9973;ERATE=0.0140;EUR_AF=0.30;LDAF=0.1699;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17122286 rs8065572 C T 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9953;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +17 17122327 rs8065832 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.37;AMR_AF=0.51;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5252;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17127471 rs1736219 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.52;LDAF=0.4657;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17168164 rs3182911 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.33;AMR_AF=0.50;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5115;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17179299 rs4985760 C G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7564;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17179481 rs4985761 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.10;AMR_AF=0.48;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4570;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17184399 rs2012954 A C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.76;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7527;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.00,-5.00 +17 17394611 rs1242489 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2069;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17409560 rs7946 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.32;AMR_AF=0.59;AN=2;ASN_AF=0.18;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.71;LDAF=0.4625;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.02,-0.04,-5.00 +17 17480195 rs2124344 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.80;AMR_AF=0.53;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0022;EUR_AF=0.61;LDAF=0.5830;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17696531 rs3803763 G C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.65;AMR_AF=0.49;AN=2;ASN_AF=0.94;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.35;LDAF=0.5942;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17696755 rs11649804 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.39;AMR_AF=0.46;AN=2;ASN_AF=0.84;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5001;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17697099 rs11078398 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.38;AMR_AF=0.44;AN=2;ASN_AF=0.76;AVGPOST=0.9650;ERATE=0.0151;EUR_AF=0.33;LDAF=0.4669;RSQ=0.9524;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17698254 rs8067439 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.55;AMR_AF=0.49;AN=2;ASN_AF=0.16;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.59;LDAF=0.4532;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17707105 rs3818717 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.12;AMR_AF=0.42;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.2980;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17721736 rs12601420 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0943;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17726965 rs12936927 C T 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.45;AN=2;ASN_AF=0.06;AVGPOST=0.9559;ERATE=0.0082;EUR_AF=0.57;LDAF=0.3569;RSQ=0.9321;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:0.950:-0.44,-0.20,-2.11 +17 17750907 rs7501812 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.47;AN=2;ASN_AF=0.04;AVGPOST=0.9983;ERATE=0.0022;EUR_AF=0.59;LDAF=0.3737;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17880877 rs7219320 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.63;AMR_AF=0.51;AN=2;ASN_AF=0.93;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.39;LDAF=0.6059;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17896090 rs4368210 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.45;AMR_AF=0.46;AN=2;ASN_AF=0.88;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5340;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17896205 rs4584886 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.45;AMR_AF=0.46;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5347;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17897739 rs4924832 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.56;AMR_AF=0.48;AN=2;ASN_AF=0.92;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.37;LDAF=0.5749;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17900990 rs8071238 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.45;AMR_AF=0.47;AN=2;ASN_AF=0.88;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.39;LDAF=0.5450;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 17925164 rs62073570 C T 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17948475 rs2955355 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4244;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 17997209 rs2230316 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.04;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3033;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 18003648 rs854814 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.56;AMR_AF=0.43;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4964;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18003671 rs2272570 T G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.87;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8862;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18003845 rs854813 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3090;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 18023897 rs2955365 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.54;AMR_AF=0.44;AN=2;ASN_AF=0.65;AVGPOST=0.9884;ERATE=0.0009;EUR_AF=0.36;LDAF=0.4915;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.39 +17 18024013 rs2955366 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.57;AMR_AF=0.44;AN=2;ASN_AF=0.65;AVGPOST=0.9643;ERATE=0.0047;EUR_AF=0.36;LDAF=0.4966;RSQ=0.9433;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.42,-0.21,-2.21 +17 18024266 rs2955367 T G 100 PASS AA=t;AC=1;AF=0.44;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.65;AVGPOST=0.9561;ERATE=0.0036;EUR_AF=0.36;LDAF=0.4450;RSQ=0.9308;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.43,-0.21,-2.17 +17 18025744 rs712268 C G 100 PASS AA=N;AC=1;AF=0.54;AFR_AF=0.62;AMR_AF=0.44;AN=2;ASN_AF=0.78;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5419;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18041507 rs2280777 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.39;AMR_AF=0.51;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5157;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18042276 rs2075658 A C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.82;AMR_AF=0.74;AN=2;ASN_AF=0.61;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7218;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +17 18043817 rs2072652 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.21;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2487;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18045098 rs2072653 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.52;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2474;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18046058 rs854778 A C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.82;AMR_AF=0.74;AN=2;ASN_AF=0.61;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7224;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 18046898 rs854777 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.89;AMR_AF=0.76;AN=2;ASN_AF=0.63;AVGPOST=0.9968;ERATE=0.0009;EUR_AF=0.75;LDAF=0.7519;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.56,-0.01 +17 18047189 rs2272571 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2496;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18052867 rs2955379 T C 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9878;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18054692 rs2056841 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2510;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18054868 rs854773 G T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.82;AMR_AF=0.74;AN=2;ASN_AF=0.61;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7215;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 18055229 rs854772 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.49;AMR_AF=0.52;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.61;LDAF=0.4273;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 18057215 rs9916193 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.41;AMR_AF=0.24;AN=2;ASN_AF=0.01;AVGPOST=0.9969;ERATE=0.0011;EUR_AF=0.20;LDAF=0.2050;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 18064730 rs8077577 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0013;EUR_AF=0.20;LDAF=0.1617;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 18065888 rs62073604 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1599;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.67 +17 18069628 rs72827432 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.21;AN=2;ASN_AF=0.56;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.13;LDAF=0.2533;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18077175 rs854800 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.89;AMR_AF=0.77;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7553;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18088094 rs11078411 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.32;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1793;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 18144720 rs2245737 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.73;AMR_AF=0.58;AN=2;ASN_AF=0.38;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5724;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18145450 rs2290509 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0466;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18148485 rs7498 G A 100 PASS AA=A;AC=2;AF=0.28;AFR_AF=0.31;AMR_AF=0.25;AN=2;ASN_AF=0.30;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2760;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18167505 rs2605143 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.89;AMR_AF=0.68;AN=2;ASN_AF=0.54;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6875;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.41,-0.00 +17 18194011 rs3817992 C A 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2404;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18194362 rs6502645 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9915;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18202996 rs2294913 C T 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2404;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18219835 rs3829956 T C 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.16;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2418;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18220770 rs1563632 G A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.89;AMR_AF=0.68;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6874;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18221010 rs12449313 A G 100 PASS AA=A;AC=2;AF=0.24;AFR_AF=0.16;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2413;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18387168 rs201554443 C T 100 PASS AA=c;AC=1;AF=0.04;AFR_AF=0.11;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9645;ERATE=0.0019;EUR_AF=0.01;LDAF=0.0515;RSQ=0.7164;SNPSOURCE=EXOME;THETA=0.0090;VT=SNP GT:DS:GL 1|0:0.800:-0.48,-0.48,-0.48 +17 18390928 rs200433251 A G 100 PASS AA=a;AC=1;AF=0.11;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9428;ERATE=0.0101;EUR_AF=0.05;LDAF=0.1225;RSQ=0.7746;SNPSOURCE=EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|0:1.000:-2.67,-0.26,-0.35 +17 18391003 rs3907319 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.27;AMR_AF=0.13;AN=2;ASN_AF=0.14;AVGPOST=0.9803;ERATE=0.0041;EUR_AF=0.06;LDAF=0.1403;RSQ=0.9271;SNPSOURCE=EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 18394010 rs199771792 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=0.8754;ERATE=0.0143;EUR_AF=0.42;LDAF=0.2891;RSQ=0.7272;SNPSOURCE=EXOME;THETA=0.0093;VT=SNP GT:DS:GL 0|1:1.100:-0.48,-0.48,-0.48 +17 18394552 rs201945348 G A 100 PASS AA=g;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.10;AVGPOST=0.9431;ERATE=0.0026;EUR_AF=0.38;LDAF=0.2394;RSQ=0.8717;SNPSOURCE=EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-2.73,-0.45,-0.19 +17 18396007 rs1725650 C G 100 PASS AA=c;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=0.9234;ERATE=0.0174;EUR_AF=0.18;LDAF=0.1358;RSQ=0.7484;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 0|1:0.950:-1.81,-0.01,-4.00 +17 18396131 rs138238232 T C 100 PASS AA=t;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.09;AVGPOST=0.9088;ERATE=0.0073;EUR_AF=0.33;LDAF=0.2028;RSQ=0.7883;SNPSOURCE=EXOME;THETA=0.0113;VT=SNP GT:DS:GL 0|1:0.600:-0.19,-0.46,-2.45 +17 18541775 rs9902086 A G 100 PASS AA=N;AC=1;AF=0.68;AFR_AF=0.67;AMR_AF=0.63;AN=2;ASN_AF=0.95;AVGPOST=0.9534;ERATE=0.0114;EUR_AF=0.49;LDAF=0.6698;RSQ=0.9400;SNPSOURCE=EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.06,-0.87 +17 18541968 rs199658782 A G 100 PASS AA=N;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0014;RSQ=0.8496;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.11,-0.65 +17 18542519 rs74452761 T G 100 PASS AA=N;AC=1;AF=0.52;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.66;AVGPOST=0.9236;ERATE=0.0248;EUR_AF=0.42;LDAF=0.5048;RSQ=0.8205;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-2.24,-0.00,-4.10 +17 18544321 rs200831553 G A 100 PASS AA=N;AC=1;AF=0.59;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.84;AVGPOST=0.8087;ERATE=0.0241;EUR_AF=0.44;LDAF=0.5560;RSQ=0.6349;SNPSOURCE=EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.100:-0.48,-0.48,-0.48 +17 18544542 rs200833160 C T 100 PASS AA=N;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=0.9812;ERATE=0.0014;EUR_AF=0.09;LDAF=0.0505;RSQ=0.8455;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +17 18659367 rs201169182 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.10;AN=2;ASN_AF=0.14;AVGPOST=0.9472;ERATE=0.0266;EUR_AF=0.05;LDAF=0.0994;RSQ=0.7437;SNPSOURCE=EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|0:0.950:-2.30,-0.00,-5.00 +17 18702220 rs8080471 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.60;AMR_AF=0.72;AN=2;ASN_AF=0.82;AVGPOST=0.9922;ERATE=0.0016;EUR_AF=0.71;LDAF=0.7124;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.80 +17 18855486 rs2073078 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.39;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.08;LDAF=0.1646;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 18872337 rs8415 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.56;AMR_AF=0.61;AN=2;ASN_AF=0.57;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.50;LDAF=0.5511;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +17 18874720 rs916823 C G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.79;AMR_AF=0.69;AN=2;ASN_AF=0.65;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6550;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18880268 rs2472715 C A 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9946;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3168;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18882991 rs2472714 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=0.9771;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 18918530 rs9891254 A G 100 PASS AA=a;AC=1;AF=0.33;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.06;AVGPOST=0.9125;ERATE=0.0135;EUR_AF=0.57;LDAF=0.3183;RSQ=0.8574;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +17 18923681 rs117355297 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0235;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19232078 rs6587220 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.89;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9451;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 19552476 rs4646793 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.49;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3143;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19555976 rs1004491 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3095;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19578873 rs7216 A T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6746;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19608773 rs4925042 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.39;AMR_AF=0.37;AN=2;ASN_AF=0.60;AVGPOST=0.9958;ERATE=0.0202;EUR_AF=0.28;LDAF=0.4053;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19609947 rs12942065 C G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.71;AMR_AF=0.70;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7381;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19610104 rs35263947 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.07;AMR_AF=0.32;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2821;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19617236 rs4924792 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.45;AVGPOST=0.9993;ERATE=0.0029;EUR_AF=0.28;LDAF=0.3417;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19642952 rs2228100 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.30;AN=2;ASN_AF=0.43;AVGPOST=0.9997;ERATE=0.0026;EUR_AF=0.23;LDAF=0.3473;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19645938 rs887241 A C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.64;AMR_AF=0.71;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7317;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19699358 rs192511 T C 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.61;AMR_AF=0.89;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.7733;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 19713740 rs150122 C T 100 PASS AA=T;AC=1;AF=0.90;AFR_AF=0.97;AMR_AF=0.93;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9045;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 19729495 rs157397 T C 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8117;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 19769181 rs281342 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1020;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 19812541 rs203462 T C 100 PASS 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AA=N;AC=2;AF=0.49;AFR_AF=0.55;AMR_AF=0.46;AN=2;ASN_AF=0.50;AVGPOST=0.9398;ERATE=0.0258;EUR_AF=0.45;LDAF=0.4818;RSQ=0.9200;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.750:-5.00,-0.65,-0.11 +17 20799194 rs9907420 A G 100 PASS AA=N;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9891;ERATE=0.0039;EUR_AF=0.12;LDAF=0.0791;RSQ=0.9485;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.99,-0.05,-5.00 +17 20908325 rs9797279 T C 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.70;AMR_AF=0.68;AN=2;ASN_AF=0.49;AVGPOST=0.9938;ERATE=0.0053;EUR_AF=0.77;LDAF=0.6656;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 20911173 rs2291034 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.28;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.16;LDAF=0.1725;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 20924523 rs2291037 G A 100 PASS AA=g;AC=2;AF=0.61;AFR_AF=0.47;AMR_AF=0.67;AN=2;ASN_AF=0.48;AVGPOST=0.9971;ERATE=0.0079;EUR_AF=0.78;LDAF=0.6147;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 21087671 rs3744226 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3071;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21201719 rs8076154 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21202191 rs33911218 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0666;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21202237 rs36047035 G C 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4999;RSQ=0.1666;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21202272 rs34880480 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5001;RSQ=0.1070;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21203820 rs78304829 G C 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21203825 rs75854955 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21203893 rs34105301 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21203934 rs62057672 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4999;RSQ=0.0664;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21203949 rs62057673 C T 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4997;RSQ=0.5372;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21203964 rs34458870 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.24;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=0.9847;ERATE=0.0248;EUR_AF=0.14;LDAF=0.1664;RSQ=0.9511;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21203998 rs62057674 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5001;RSQ=0.1115;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21204153 rs66883103 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4999;RSQ=0.0299;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21204187 rs56067280 G T 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21204192 rs56216806 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21204210 rs55796947 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21204266 rs2230435 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.57;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9973;ERATE=0.0212;EUR_AF=0.53;LDAF=0.5385;RSQ=0.9768;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21205406 rs72831582 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9978;ERATE=0.0010;EUR_AF=0.50;LDAF=0.4991;RSQ=0.2301;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21205460 rs62057721 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4990;RSQ=0.8383;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21205604 rs62057722 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4999;RSQ=0.0730;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21205606 rs2305871 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9950;ERATE=0.0097;EUR_AF=0.18;LDAF=0.2021;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:0.950:-1.92,-0.01,-5.00 +17 21206556 rs736103 C T 100 PASS AA=c;AC=1;AF=0.52;AFR_AF=0.50;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9948;ERATE=0.0049;EUR_AF=0.52;LDAF=0.5201;RSQ=0.9064;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.12 +17 21207834 rs58609466 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.38;AMR_AF=0.26;AN=2;ASN_AF=0.29;AVGPOST=0.9931;ERATE=0.0174;EUR_AF=0.28;LDAF=0.3019;RSQ=0.9798;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21207844 rs2230436 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=0.9947;ERATE=0.0204;EUR_AF=0.43;LDAF=0.4169;RSQ=0.9738;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-2.77,-0.00,-5.00 +17 21208317 rs4456559 G A 100 PASS AA=g;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5008;RSQ=0.5304;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21208331 rs1898407 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.48;AMR_AF=0.34;AN=2;ASN_AF=0.16;AVGPOST=0.9916;ERATE=0.0122;EUR_AF=0.37;LDAF=0.3378;RSQ=0.9752;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21208347 rs4559960 C A 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0666;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21208349 rs7209860 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4999;RSQ=0.0641;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21208413 rs1657695 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21208449 rs1657694 G T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21208456 rs1657693 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4999;RSQ=0.0373;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21215424 rs35026048 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.49;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9946;ERATE=0.0051;EUR_AF=0.39;LDAF=0.3491;RSQ=0.9812;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21215446 rs62055363 C T 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4997;RSQ=0.1259;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21215483 rs55935757 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9989;ERATE=0.0015;EUR_AF=0.50;LDAF=0.4990;RSQ=0.7683;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21215537 rs55736474 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4996;RSQ=0.1095;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21215552 rs56369732 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4997;RSQ=0.0917;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21215557 rs35206134 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4998;RSQ=0.1640;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21215637 rs66486636 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4998;RSQ=0.1069;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21215643 rs73302034 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4995;RSQ=0.7665;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21216788 rs1673840 C T 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5001;RSQ=0.0999;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21216846 rs1657688 G C 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9991;ERATE=0.0007;EUR_AF=0.50;LDAF=0.4990;RSQ=0.7062;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21216891 rs934688 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9908;ERATE=0.0182;EUR_AF=0.39;LDAF=0.3177;RSQ=0.9723;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21217411 rs1657684 T C 100 PASS AA=t;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4998;RSQ=0.0698;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21217513 rs2363198 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9966;ERATE=0.0044;EUR_AF=0.49;LDAF=0.4939;RSQ=0.7910;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21217547 rs2363197 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4992;RSQ=0.5953;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21217554 rs2363196 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4992;RSQ=0.6265;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21217566 rs2363375 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4992;RSQ=0.4869;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21217586 rs2363374 G T 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4997;RSQ=0.1089;SNPSOURCE=EXOME;THETA=0.0604;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21318629 . C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5003;RSQ=0.3477;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21318663 rs72846666 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4997;RSQ=0.4330;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21318698 rs1657738 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4999;RSQ=0.4427;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21318782 rs78117732 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4988;RSQ=0.7573;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21318867 rs73979893 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4995;RSQ=0.6769;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21318897 rs1657739 G C 100 PASS AA=g;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4994;RSQ=0.6136;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21318912 rs35011501 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.10;AMR_AF=0.36;AN=2;ASN_AF=0.44;AVGPOST=0.9913;ERATE=0.0293;EUR_AF=0.32;LDAF=0.3082;RSQ=0.9732;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21318918 rs79626424 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9986;ERATE=0.0014;EUR_AF=0.50;LDAF=0.4982;RSQ=0.7559;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21318952 rs8076599 A G 100 PASS AA=a;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5001;RSQ=0.1937;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21318981 rs9909970 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9955;ERATE=0.0048;EUR_AF=0.49;LDAF=0.4913;RSQ=0.8278;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21319110 rs77283567 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4994;RSQ=0.1586;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21319121 rs1714864 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4995;RSQ=0.3613;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21319251 rs73313923 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.50;LDAF=0.4989;RSQ=0.5098;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21319272 rs73313926 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.50;LDAF=0.4987;RSQ=0.5289;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21319302 rs1657743 T C 100 PASS AA=t;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5000;RSQ=0.1125;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21319392 rs73979899 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.47;AN=2;ASN_AF=0.46;AVGPOST=0.9916;ERATE=0.0036;EUR_AF=0.48;LDAF=0.4738;RSQ=0.8777;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 21319407 rs16962951 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.30;AMR_AF=0.28;AN=2;ASN_AF=0.41;AVGPOST=0.9831;ERATE=0.0325;EUR_AF=0.32;LDAF=0.3347;RSQ=0.9469;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.01,-0.05,-5.00 +17 21319785 rs1657745 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4999;RSQ=0.0748;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 21319908 rs66981137 C T 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4995;RSQ=0.0955;SNPSOURCE=EXOME;THETA=0.0312;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 25970642 rs361498 A T 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9853;ERATE=0.0005;EUR_AF=0.22;LDAF=0.1028;RSQ=0.9442;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +17 26108040 rs2297520 T C 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.86;AMR_AF=0.70;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6483;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 26109030 rs3729508 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.86;AMR_AF=0.70;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6444;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 26691321 rs9910163 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8697;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 26694861 rs704 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.58;AMR_AF=0.55;AN=2;ASN_AF=0.77;AVGPOST=0.9944;ERATE=0.0052;EUR_AF=0.44;LDAF=0.5765;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 26695704 rs2227725 A G 100 PASS AA=a;AC=1;AF=0.97;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9684;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 26818676 rs9890678 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9683;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 26851501 rs614434 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.34;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.75;LDAF=0.6822;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 26851890 rs142223881 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 26874314 rs2070139 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.18;LDAF=0.0894;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 27000391 rs9904043 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.67;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7459;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 27002402 rs9892089 A G 100 PASS AA=a;AC=2;AF=0.75;AFR_AF=0.67;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7454;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 27004703 rs7207976 C A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.36;AMR_AF=0.66;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0020;EUR_AF=0.70;LDAF=0.6241;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 27009749 rs12051648 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.05;AMR_AF=0.44;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.57;LDAF=0.4181;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 27068978 rs145898152 G A 100 PASS AA=G;AC=1;AF=0.0041;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0041;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 27185827 rs2242345 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.91;AMR_AF=0.72;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7843;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 27225937 rs4795473 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=0.68;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7299;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.58,-0.00 +17 27382878 rs143566431 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.900:-5.00,0.00,-5.00 +17 27413908 rs4795495 C G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.86;AMR_AF=0.51;AN=2;ASN_AF=0.90;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7048;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 27437134 rs2279958 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.73;AMR_AF=0.48;AN=2;ASN_AF=0.90;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.51;LDAF=0.6558;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 27438469 rs8076604 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.40;AMR_AF=0.41;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5334;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 27441077 rs12601535 C G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.73;AMR_AF=0.49;AN=2;ASN_AF=0.90;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6579;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 27835138 rs508706 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.85;AMR_AF=0.87;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8359;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 27869968 rs507577 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.18;AMR_AF=0.42;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.2766;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +17 27898828 rs565977 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.60;AMR_AF=0.64;AN=2;ASN_AF=0.81;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6984;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 27901975 rs550818 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.94;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8116;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.65,-0.01 +17 27904617 rs2278217 C A 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4128;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 27904711 rs11080105 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4123;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 28029938 rs3102560 T C 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.65;AMR_AF=0.58;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6142;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 28120887 rs72823964 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.11;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.11;LDAF=0.0591;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 28511978 rs1979572 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.57;AMR_AF=0.55;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5928;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 28576076 rs1050565 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2739;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 28612448 rs7342921 G C 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2898;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 28778720 rs2253256 G C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.85;AMR_AF=0.51;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6678;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 28890203 rs216455 T C 100 PASS AA=.;AC=1;AF=0.57;AFR_AF=0.48;AMR_AF=0.49;AN=2;ASN_AF=0.76;AVGPOST=0.9958;ERATE=0.0012;EUR_AF=0.52;LDAF=0.5667;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.86 +17 29161503 rs11080134 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.0017;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.33;LDAF=0.1737;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 29206421 rs6505216 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.55;AMR_AF=0.24;AN=2;ASN_AF=0.08;AVGPOST=0.9901;ERATE=0.0239;EUR_AF=0.25;LDAF=0.2696;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 29226630 rs28539246 T A 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.23;AVGPOST=0.9785;ERATE=0.0160;EUR_AF=0.37;LDAF=0.4210;RSQ=0.9695;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 29226652 rs9897628 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.81;AMR_AF=0.44;AN=2;ASN_AF=0.24;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4509;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 29486152 rs2952976 G A 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.22;AMR_AF=0.58;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5489;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 29508775 rs1801052 G A 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.22;AMR_AF=0.58;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 29541437 rs2905876 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.10;AMR_AF=0.57;AN=2;ASN_AF=0.59;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.72;LDAF=0.5218;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.00,-0.00 +17 29546175 rs2905880 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.10;AMR_AF=0.57;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5222;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 29557442 rs200546392 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.85 +17 29844658 rs3744619 C G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.61;AMR_AF=0.42;AN=2;ASN_AF=0.57;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4439;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 29844909 rs3744618 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.41;AMR_AF=0.40;AN=2;ASN_AF=0.56;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3947;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.30 +17 29852092 rs2023795 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.91;AMR_AF=0.64;AN=2;ASN_AF=0.83;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7639;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +17 29857460 rs61731602 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1283;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 30183857 rs8068049 T C 100 PASS AA=t;AC=2;AF=0.90;AFR_AF=1.00;AMR_AF=0.87;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8990;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 30228656 rs2074101 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.41;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2619;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 30502955 rs8076276 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.21;AMR_AF=0.19;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2006;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 30533970 rs16967164 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.59;AMR_AF=0.22;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2911;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 30611885 rs60163475 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.30;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1896;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0090;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 30643361 rs2344973 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.97;AMR_AF=0.76;AN=2;ASN_AF=0.63;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7926;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 30696292 rs2286645 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.75;AMR_AF=0.56;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5128;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 30791503 rs2302276 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5363;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 30980972 rs2249638 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.56;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6732;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 31039255 rs11080184 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.43;AMR_AF=0.44;AN=2;ASN_AF=0.72;AVGPOST=0.9979;ERATE=0.0032;EUR_AF=0.47;LDAF=0.5199;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 31107845 rs10512439 A G 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.38;AMR_AF=0.42;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5036;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 31258686 rs72817027 G C 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0344;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.51,-0.01,-5.00 +17 31260255 rs29019 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0631;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 31261382 rs29016 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0640;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 31268015 rs28259 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.10;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0502;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 31319024 rs2188953 A C 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.77;AMR_AF=0.71;AN=2;ASN_AF=0.54;AVGPOST=0.9981;ERATE=0.0032;EUR_AF=0.60;LDAF=0.6407;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.36,-0.00 +17 31319033 rs3922357 G C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.50;AVGPOST=0.9988;ERATE=0.0009;EUR_AF=0.57;LDAF=0.5988;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +17 31618732 rs9893935 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.56;AMR_AF=0.59;AN=2;ASN_AF=0.75;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5883;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 31618997 rs112647385 C A 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9729;ERATE=0.0018;EUR_AF=0.27;LDAF=0.2633;RSQ=0.9468;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +17 32483237 rs2228990 A G 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.21;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=0.9981;ERATE=0.0009;EUR_AF=0.19;LDAF=0.2592;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 32483270 rs2228989 C G 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2189;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 32583269 rs4586 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 32904586 rs887230 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.87;AMR_AF=0.81;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8309;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 32908064 rs4795938 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.81;AN=2;ASN_AF=0.89;AVGPOST=0.9928;ERATE=0.0009;EUR_AF=0.84;LDAF=0.8817;RSQ=0.9721;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +17 33286664 rs2230552 A G 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2907;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33288363 rs9635769 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.32;AMR_AF=0.49;AN=2;ASN_AF=0.82;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.57;LDAF=0.5657;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33288882 rs931196 T G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8993;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33331575 rs1052536 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3228;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 33433487 rs4796033 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0970;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 33434093 rs201141245 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +17 33448818 rs1871892 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.67;LDAF=0.8037;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33454415 rs2306508 C A 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.12;AMR_AF=0.52;AN=2;ASN_AF=0.71;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4492;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 33464864 rs7215209 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.87;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8190;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33469279 rs1471615 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9888;ERATE=0.0007;EUR_AF=0.96;LDAF=0.9807;RSQ=0.7898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +17 33482522 rs11869662 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.27;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1696;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 33501432 rs1384220 C T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5786;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 33502937 rs11657816 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.35;AMR_AF=0.27;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3440;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +17 33504465 rs12451132 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.44,-0.02,-5.00 +17 33513591 rs3744365 A C 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1508;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 33520263 rs7208407 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=0.9910;ERATE=0.0007;EUR_AF=0.39;LDAF=0.2015;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:0.950:-1.67,-0.01,-5.00 +17 33592591 rs11651240 C T 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2518;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 33680807 rs9897352 G A 100 PASS AA=g;AC=1;AF=0.77;AFR_AF=0.72;AMR_AF=0.71;AN=2;ASN_AF=0.94;AVGPOST=0.9716;ERATE=0.0187;EUR_AF=0.69;LDAF=0.7626;RSQ=0.9418;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 33680811 rs9898983 C A 100 PASS AA=c;AC=1;AF=0.32;AFR_AF=0.47;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9826;ERATE=0.0080;EUR_AF=0.17;LDAF=0.3261;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 33680840 rs28571667 T C 100 PASS AA=N;AC=2;AF=0.91;AFR_AF=0.83;AMR_AF=0.93;AN=2;ASN_AF=0.95;AVGPOST=0.9505;ERATE=0.0517;EUR_AF=0.92;LDAF=0.9043;RSQ=0.8021;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33689926 rs4796077 T C 100 PASS AA=t;AC=2;AF=0.97;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33690466 rs12453150 C A 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.15;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4456;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 33690619 rs72825958 G T 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0950;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 33690863 rs4796078 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33749546 rs2586514 A G 100 PASS AA=g;AC=1;AF=0.58;AFR_AF=0.66;AMR_AF=0.62;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5799;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 33749919 rs1849733 A C 100 PASS AA=a;AC=1;AF=0.42;AFR_AF=0.27;AMR_AF=0.50;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4171;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 33768199 rs1822403 G A 100 PASS AA=g;AC=1;AF=0.40;AFR_AF=0.49;AMR_AF=0.37;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4040;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 33768354 rs3744371 C T 100 PASS AA=t;AC=1;AF=0.57;AFR_AF=0.78;AMR_AF=0.46;AN=2;ASN_AF=0.63;AVGPOST=0.9791;ERATE=0.0366;EUR_AF=0.44;LDAF=0.5654;RSQ=0.9744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 33968871 rs225270 A T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=1.00;AMR_AF=0.86;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8921;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 33998802 rs1049379 G C 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.44;AMR_AF=0.46;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4749;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 34072386 rs78157254 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0136;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +17 34171827 rs4251786 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.12;AN=2;AVGPOST=0.9986;ERATE=0.0011;EUR_AF=0.15;LDAF=0.0719;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-1.42,-0.02,-5.00 +17 34264859 rs2280783 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.22;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1418;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 34328461 rs854625 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.55;AMR_AF=0.91;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.7805;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 34340284 rs1003645 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.13;AMR_AF=0.74;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.5814;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 34340846 rs182352077 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 34416665 rs1719133 A G 100 PASS AA=.;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 34431884 rs55906345 T C 100 PASS AA=.;AC=2;AF=0.97;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=0.97;AVGPOST=0.9832;ERATE=0.0027;EUR_AF=1.00;LDAF=0.9699;RSQ=0.8018;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +17 34431961 rs1719146 T C 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.67;AMR_AF=0.84;AN=2;ASN_AF=0.81;AVGPOST=0.9389;ERATE=0.0904;EUR_AF=0.83;LDAF=0.7892;RSQ=0.8999;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:1.650:-4.10,-0.54,-0.15 +17 34842521 rs4796224 A G 100 PASS AA=.;AC=2;AF=0.49;AFR_AF=0.53;AMR_AF=0.54;AN=2;ASN_AF=0.45;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4859;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 34871839 rs201822341 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.8415;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 35346641 rs1045056 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.35;LDAF=0.1822;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 35378217 rs2301686 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.19;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1389;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 35414006 rs11653434 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0545;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 35478362 rs1470452 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 35549275 rs2305099 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.77;AMR_AF=0.63;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7559;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 35608889 rs1519091 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.52;AMR_AF=0.61;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6979;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 35632979 rs2542660 C A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.58;AMR_AF=0.62;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7126;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 35696804 rs58654829 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.34;AMR_AF=0.55;AN=2;ASN_AF=0.67;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6241;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 35743010 rs1714987 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.55;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3174;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 35771468 rs7211875 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.96;AMR_AF=0.88;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8442;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 35902225 rs3110623 C G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.61;AMR_AF=0.39;AN=2;ASN_AF=0.66;AVGPOST=0.9978;ERATE=0.0014;EUR_AF=0.40;LDAF=0.5120;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 35956263 rs4795207 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 35984410 rs7216445 T C 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.42;AMR_AF=0.73;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.76;LDAF=0.6265;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 35988672 rs7224513 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.41;AMR_AF=0.72;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6189;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 36003359 rs3813910 A G 100 PASS AA=a;AC=2;AF=0.63;AFR_AF=0.47;AMR_AF=0.72;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6335;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +17 36047417 rs3110641 A G 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.40;AMR_AF=0.73;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6746;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 36453125 rs112285248 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.08;AN=2;ASN_AF=0.20;AVGPOST=0.9440;ERATE=0.0342;EUR_AF=0.02;LDAF=0.1219;RSQ=0.7742;SNPSOURCE=EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-2.86 +17 36861983 rs17855918 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +17 36909061 rs228274 A G 100 PASS AA=g;AC=2;AF=0.81;AFR_AF=0.66;AMR_AF=0.82;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8112;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 36909499 rs4907 A T 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1486;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 36926731 rs228289 T G 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.49;AMR_AF=0.35;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3533;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 36926767 rs228290 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2916;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 36962670 rs228249 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.60;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3482;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 36997679 rs597234 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.26;AMR_AF=0.29;AN=2;ASN_AF=0.22;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.25;LDAF=0.2526;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 37070658 rs525989 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.90;AMR_AF=0.58;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6808;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 37070737 rs525767 A G 100 PASS AA=a;AC=1;AF=0.68;AFR_AF=0.87;AMR_AF=0.58;AN=2;ASN_AF=0.59;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6753;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 37101380 rs9906595 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9607;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37228765 rs9907595 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.76;AMR_AF=0.86;AN=2;ASN_AF=0.59;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.77;LDAF=0.7363;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.73,-0.00 +17 37239671 rs9891236 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8400;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +17 37243927 rs12602945 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.38;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2834;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 37244004 rs12600774 G A 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.09;AMR_AF=0.36;AN=2;ASN_AF=0.32;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2553;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 37369416 rs1859262 G A 100 PASS AA=N;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.36;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3434;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 37371519 rs11078892 T C 100 PASS AA=N;AC=2;AF=0.60;AFR_AF=0.67;AMR_AF=0.53;AN=2;ASN_AF=0.67;AVGPOST=0.9969;ERATE=0.0067;EUR_AF=0.51;LDAF=0.5950;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37566398 rs199502446 T C 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0010;RSQ=0.9009;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 37790371 rs907094 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.22;AMR_AF=0.62;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5540;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37814080 rs1877031 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.18;AMR_AF=0.53;AN=2;ASN_AF=0.48;AVGPOST=0.9983;ERATE=0.0009;EUR_AF=0.68;LDAF=0.4908;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37822311 rs1053651 A C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.44;AMR_AF=0.58;AN=2;ASN_AF=0.49;AVGPOST=0.9965;ERATE=0.0015;EUR_AF=0.72;LDAF=0.5741;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37829129 rs2247862 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5838;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37830900 rs2941504 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.52;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5823;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +17 37868715 rs4252627 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.18;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4823;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37879762 rs903506 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.20;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4898;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.73,-0.01 +17 37884037 rs61552325 C G 100 PASS AA=c;AC=2;AF=0.49;AFR_AF=0.20;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0007;EUR_AF=0.68;LDAF=0.4908;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37898543 rs2952142 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 37922259 rs907092 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.35;AVGPOST=0.9983;ERATE=0.0040;EUR_AF=0.48;LDAF=0.3474;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38020419 rs1453559 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.63;AMR_AF=0.44;AN=2;ASN_AF=0.31;AVGPOST=0.9966;ERATE=0.0008;EUR_AF=0.53;LDAF=0.4811;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38024626 rs11557466 C T 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3355;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38024839 rs75027016 C T 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0438;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38028634 rs11557467 G T 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.31;AVGPOST=0.9989;ERATE=0.0014;EUR_AF=0.52;LDAF=0.4074;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38031674 rs10852935 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3350;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38031714 rs10852936 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.25;AMR_AF=0.36;AN=2;ASN_AF=0.31;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3664;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38062196 rs2305480 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3295;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38062217 rs2305479 C T 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3530;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38121993 rs3894194 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9971;ERATE=0.0007;EUR_AF=0.44;LDAF=0.4258;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38122200 rs8069202 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.27;AMR_AF=0.51;AN=2;ASN_AF=0.49;AVGPOST=0.9933;ERATE=0.0018;EUR_AF=0.44;LDAF=0.4269;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38122680 rs7212938 G T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.88;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=0.9927;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5986;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38122686 rs7212944 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.40;AVGPOST=0.9927;ERATE=0.0008;EUR_AF=0.33;LDAF=0.3526;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38122708 rs9914973 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.26;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9904;ERATE=0.0038;EUR_AF=0.33;LDAF=0.3244;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0115;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38137364 rs3087852 G A 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.69;AMR_AF=0.54;AN=2;ASN_AF=0.41;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=0.45;LDAF=0.5090;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.55,-0.50,-0.16 +17 38140524 rs3816471 T C 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.92;AN=2;ASN_AF=0.86;AVGPOST=0.9840;ERATE=0.0074;EUR_AF=0.90;LDAF=0.8945;RSQ=0.9402;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 38145088 rs9915252 C G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.69;AMR_AF=0.60;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5471;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 38153554 rs2241244 G C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.69;AMR_AF=0.60;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5470;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 38172452 rs2071370 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9053;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +17 38173143 rs25645 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.07;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9992;ERATE=0.0013;EUR_AF=0.36;LDAF=0.3171;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38175866 rs11555254 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.18;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1244;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38176476 rs9899955 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.92;AN=2;ASN_AF=0.83;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8864;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.53,-0.01 +17 38179492 rs2302777 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.07;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3166;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38179667 rs2302778 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.60;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7413;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38183090 rs2302774 G T 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3200;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38186106 rs11555255 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.16;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1189;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38189049 rs4072639 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.08;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3190;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38189055 rs3935280 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.64;AMR_AF=0.65;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6142;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 38251657 rs72836608 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.32;LDAF=0.1971;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38252667 rs939346 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9928;ERATE=0.0013;EUR_AF=0.99;LDAF=0.9899;RSQ=0.7285;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 38556770 rs471692 T C 100 PASS AA=t;AC=1;AF=0.83;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.77;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.84;LDAF=0.8345;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38572366 rs2586112 G A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.77;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8340;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38600092 rs598892 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.05;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=0.9878;ERATE=0.0013;EUR_AF=0.41;LDAF=0.3514;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.86,-0.26,-0.34 +17 38855772 rs2462961 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.57;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5486;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38856487 . C T 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38856662 rs887376 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.25;AMR_AF=0.62;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4671;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38857446 rs874889 C A 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4648;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38905477 rs10491127 T G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.37;AMR_AF=0.42;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.46;LDAF=0.4985;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38911212 rs12951078 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.16;AMR_AF=0.53;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5183;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38911363 rs12951399 G A 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3694;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38935750 rs116871734 T G 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0074;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38935812 rs981684 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5958;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38936659 rs17558560 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.12;AMR_AF=0.31;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3959;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 38956007 rs142165420 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0083;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38978536 rs4261597 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 38990780 rs17474506 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0276;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 38990834 rs2240078 G C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=0.79;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8900;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39023396 rs11650915 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.10;AMR_AF=0.39;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3387;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39081713 rs8037 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.56;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5498;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39084504 rs9257 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.59;AMR_AF=0.56;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5594;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39092735 rs34861030 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0248;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39092868 rs2269858 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.24;AMR_AF=0.39;AN=2;ASN_AF=0.46;AVGPOST=0.9990;ERATE=0.0007;EUR_AF=0.24;LDAF=0.3229;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39116603 rs17843023 G T 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.02;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0480;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39116728 rs17843021 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1257;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39123013 rs17645930 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1257;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39123138 rs111441819 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.02;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0480;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39134455 rs2271277 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.87;AMR_AF=0.34;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.4465;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39134561 rs2271278 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.71;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.27;LDAF=0.3455;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39134576 rs2271279 A C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.80;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3644;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39134585 rs2271280 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.71;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3447;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39134590 rs2271281 G C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.93;AMR_AF=0.65;AN=2;ASN_AF=0.57;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.55;LDAF=0.6580;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39135084 rs8064733 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.71;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3446;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39135205 rs8064910 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.93;AMR_AF=0.65;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6589;RSQ=0.9995;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39135207 rs150812789 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.31;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2124;RSQ=0.9993;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39135214 rs8068970 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.71;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3446;RSQ=0.9999;SNPSOURCE=EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39135322 rs8068223 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.71;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3446;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39137104 rs9908389 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3359;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39137154 rs721958 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3359;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39137297 rs721957 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.91;AMR_AF=0.64;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6541;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39137387 rs2010027 C T 100 PASS AA=c;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3359;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39138712 rs4243257 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3360;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39139256 rs9910558 A T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.91;AMR_AF=0.64;AN=2;ASN_AF=0.58;AVGPOST=0.9963;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6525;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 39139274 rs34812152 A T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.68;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9959;ERATE=0.0006;EUR_AF=0.27;LDAF=0.3334;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39139279 rs35072663 A T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.68;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3343;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39139370 rs9908304 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3359;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39139413 rs9910145 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3357;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39139430 rs9908522 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3358;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39140221 rs1510068 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3359;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39140417 rs1510069 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3358;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39150167 rs12452295 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.06;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2482;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39150284 rs2010201 A G 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.60;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9859;ERATE=0.0106;EUR_AF=0.27;LDAF=0.4223;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 39150357 rs1989365 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.68;AMR_AF=0.50;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.5060;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39155881 rs3813048 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.48;AMR_AF=0.15;AN=2;ASN_AF=0.22;AVGPOST=0.9897;ERATE=0.0081;EUR_AF=0.09;LDAF=0.2204;RSQ=0.9808;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39155969 rs3813050 A G 100 PASS AA=a;AC=1;AF=0.22;AFR_AF=0.49;AMR_AF=0.15;AN=2;ASN_AF=0.22;AVGPOST=0.9901;ERATE=0.0070;EUR_AF=0.10;LDAF=0.2252;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39156027 rs3829598 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.17;LDAF=0.1700;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39156067 rs9890989 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.56;AMR_AF=0.17;AN=2;ASN_AF=0.24;AVGPOST=0.9884;ERATE=0.0033;EUR_AF=0.11;LDAF=0.2558;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39156084 rs9897046 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.56;AMR_AF=0.19;AN=2;ASN_AF=0.25;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2629;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39190758 rs62622847 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1878;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.66,-0.11 +17 39197176 rs3815561 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1952;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39197499 rs3213755 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1952;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39203455 rs9635728 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9900;ERATE=0.0007;EUR_AF=0.14;LDAF=0.1826;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +17 39305956 rs1497383 G A 100 PASS AA=.;AC=1;AF=0.44;AFR_AF=0.38;AMR_AF=0.52;AN=2;ASN_AF=0.38;AVGPOST=0.9965;ERATE=0.0005;EUR_AF=0.48;LDAF=0.4354;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39333956 rs377518 T C 100 PASS AA=.;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.97;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.9401;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39334133 rs389784 T C 100 PASS AA=.;AC=2;AF=0.94;AFR_AF=0.92;AMR_AF=0.97;AN=2;ASN_AF=0.95;AVGPOST=0.9933;ERATE=0.0004;EUR_AF=0.92;LDAF=0.9352;RSQ=0.9591;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +17 39334456 rs493514 G A 100 PASS AA=.;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.97;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.9401;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39382942 rs11078986 C A 100 PASS AA=.;AC=1;AF=0.43;AFR_AF=0.39;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9350;ERATE=0.0756;EUR_AF=0.43;LDAF=0.4292;RSQ=0.8275;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.02,-1.35 +17 39383073 rs9902235 G C 100 PASS AA=.;AC=2;AF=0.70;AFR_AF=0.61;AMR_AF=0.82;AN=2;ASN_AF=0.64;AVGPOST=0.9928;ERATE=0.0006;EUR_AF=0.74;LDAF=0.6971;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-4.00,-0.53,-0.15 +17 39388852 rs1860551 T C 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=0.93;AVGPOST=0.9695;ERATE=0.0008;EUR_AF=0.91;LDAF=0.9186;RSQ=0.8562;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +17 39394674 rs71383390 A G 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9811;ERATE=0.0014;EUR_AF=0.73;LDAF=0.7423;RSQ=0.9663;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-2.87,-0.46,-0.19 +17 39394729 rs146488039 C A 100 PASS AA=.;AC=2;AF=0.60;AFR_AF=0.66;AMR_AF=0.72;AN=2;ASN_AF=0.43;AVGPOST=0.9292;ERATE=0.0010;EUR_AF=0.64;LDAF=0.5982;RSQ=0.9101;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:1.900:-0.48,-0.48,-0.48 +17 39394755 rs141050869 C A 100 PASS AA=.;AC=2;AF=0.75;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9796;ERATE=0.0015;EUR_AF=0.73;LDAF=0.7410;RSQ=0.9642;SNPSOURCE=EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:1.950:-0.87,-0.39,-0.34 +17 39394787 rs201305440 C A 100 PASS AA=.;AC=2;AF=0.75;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9857;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7439;RSQ=0.9756;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.950:-3.52,-0.50,-0.16 +17 39394790 rs202037613 T C 100 PASS AA=.;AC=2;AF=0.75;AFR_AF=0.85;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9875;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7457;RSQ=0.9784;SNPSOURCE=EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:1.950:-3.52,-0.50,-0.16 +17 39394807 rs143369519 C A 100 PASS AA=.;AC=2;AF=0.75;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9865;ERATE=0.0006;EUR_AF=0.73;LDAF=0.7454;RSQ=0.9761;SNPSOURCE=EXOME;THETA=0.0137;VT=SNP GT:DS:GL 1|1:1.950:-0.88,-0.39,-0.34 +17 39405960 rs11655750 T C 100 PASS AA=.;AC=2;AF=0.58;AFR_AF=0.39;AMR_AF=0.69;AN=2;ASN_AF=0.57;AVGPOST=0.9527;ERATE=0.0411;EUR_AF=0.65;LDAF=0.5696;RSQ=0.9367;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +17 39406409 rs2191379 C A 100 PASS AA=.;AC=2;AF=0.67;AFR_AF=0.52;AMR_AF=0.78;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6682;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39406447 rs3967754 A G 100 PASS AA=.;AC=2;AF=0.64;AFR_AF=0.51;AMR_AF=0.74;AN=2;ASN_AF=0.63;AVGPOST=0.9886;ERATE=0.0151;EUR_AF=0.70;LDAF=0.6431;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39535859 rs2239710 A G 100 PASS AA=g;AC=2;AF=0.72;AFR_AF=0.95;AMR_AF=0.70;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7180;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +17 39551099 rs117612447 C T 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0101;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39577180 rs17737019 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0279;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39580559 rs9916475 T A 100 PASS AA=.;AC=1;AF=0.37;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3715;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39580562 rs9916484 T C 100 PASS AA=.;AC=1;AF=0.37;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3715;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39580660 rs9916724 T C 100 PASS AA=.;AC=1;AF=0.37;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3715;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39580739 rs9910204 C A 100 PASS AA=.;AC=1;AF=0.20;AFR_AF=0.17;AMR_AF=0.27;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1982;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39593620 rs9894044 T C 100 PASS AA=.;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.27;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1978;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.47 +17 39593768 rs897416 A G 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.88;LDAF=0.9250;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39595116 rs9894668 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.27;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1979;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39595661 rs2071611 T A 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.38;AMR_AF=0.63;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.62;LDAF=0.6256;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39596393 rs12601328 C A 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.34;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4511;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39596402 rs2071610 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.38;AMR_AF=0.63;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.62;LDAF=0.6261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39596538 rs2071609 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.34;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4511;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39616430 rs2604953 G T 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.76;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8420;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39619193 rs11078993 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.05;LDAF=0.1041;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39620565 rs72830046 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.23;AN=2;ASN_AF=0.10;AVGPOST=0.9983;ERATE=0.0058;EUR_AF=0.26;LDAF=0.1680;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39622068 rs2071561 G T 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.25;AMR_AF=0.57;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4648;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39623363 rs3744786 T C 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2902;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39623622 rs1807434 A C 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2902;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +17 39633317 rs2239711 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.75;AMR_AF=0.74;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.71;LDAF=0.6950;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39633349 rs2071601 G C 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.66;AMR_AF=0.60;AN=2;ASN_AF=0.31;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5171;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39634576 rs7220061 T G 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.74;AMR_AF=0.61;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5328;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39634625 rs7216017 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.74;AMR_AF=0.61;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5333;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39635777 rs201188742 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 39636044 rs2011243 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.94;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39637244 rs743686 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.74;AMR_AF=0.61;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5324;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39643646 rs2301354 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.39;AMR_AF=0.61;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4543;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39645003 rs60125824 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1044;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39646021 rs1003842 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7326;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39659183 rs4796698 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.43;AMR_AF=0.89;AN=2;ASN_AF=0.97;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.94;LDAF=0.8266;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39659194 rs4796697 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.65;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9160;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39659529 rs7211835 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.48;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.94;LDAF=0.8382;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39659913 rs9891361 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.16;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.91;LDAF=0.7272;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39661689 rs8182306 G A 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.60;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8661;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39670912 rs897420 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9767;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39674641 rs1050784 T C 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.59;AMR_AF=0.74;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7175;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39680796 rs1869720 T A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39681475 rs4601 A G 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.58;AMR_AF=0.73;AN=2;ASN_AF=0.93;AVGPOST=0.9986;ERATE=0.0030;EUR_AF=0.63;LDAF=0.7138;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39684321 rs4602 G C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.64;AMR_AF=0.74;AN=2;ASN_AF=0.93;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.63;LDAF=0.7293;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +17 39684410 rs11550883 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.42;AMR_AF=0.72;AN=2;ASN_AF=0.93;AVGPOST=0.9967;ERATE=0.0006;EUR_AF=0.63;LDAF=0.6772;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.34,-0.00 +17 39723990 rs3890472 T A 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.39;AMR_AF=0.67;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6435;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39724047 rs1008753 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.46;AMR_AF=0.68;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6606;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39726276 rs3816510 C A 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6569;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39727816 rs8075921 T G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.38;AMR_AF=0.66;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0014;EUR_AF=0.56;LDAF=0.6395;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39728050 rs8070680 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.60;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.67;LDAF=0.7534;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39739524 rs59780231 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.07;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0305;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.54 +17 39742718 rs3826549 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.48;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6718;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.59,-0.00 +17 39742894 rs3826551 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.48;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6716;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +17 39742898 rs11551758 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.82;AVGPOST=0.9659;ERATE=0.0096;EUR_AF=0.47;LDAF=0.5574;RSQ=0.9616;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +17 39743081 rs11551759 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.48;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=0.9963;ERATE=0.0007;EUR_AF=0.58;LDAF=0.6707;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-1.37,-0.38,-0.27 +17 39766504 rs7406899 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.96;LDAF=0.9827;RSQ=0.9494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +17 39767551 rs201610693 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8999;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +17 39767744 rs4796681 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.70;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7521;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39871700 rs7220169 G A 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.70;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8423;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39881289 rs8075017 G C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.89;AMR_AF=0.85;AN=2;ASN_AF=0.89;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8834;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39883972 rs4796600 C T 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.83;LDAF=0.8512;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.07,-0.00 +17 39884091 rs4796601 G C 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.79;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8199;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39884419 rs4796692 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.65;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7998;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39884583 rs4796693 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7708;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39888455 rs3895103 G C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8501;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39890715 rs4796603 A T 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.80;AN=2;ASN_AF=0.89;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7703;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39890876 rs4796604 T C 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.33;AMR_AF=0.55;AN=2;ASN_AF=0.74;AVGPOST=0.9840;ERATE=0.0008;EUR_AF=0.51;LDAF=0.5392;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +17 39913645 rs7216034 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.90;AMR_AF=0.61;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.74;LDAF=0.6979;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39914070 rs8067890 G T 100 PASS AA=g;AC=1;AF=0.63;AFR_AF=0.68;AMR_AF=0.58;AN=2;ASN_AF=0.47;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.74;LDAF=0.6314;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39923614 rs12942034 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.91;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.81;LDAF=0.7291;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39925925 rs7405731 A G 100 PASS AA=g;AC=1;AF=0.71;AFR_AF=0.92;AMR_AF=0.58;AN=2;ASN_AF=0.52;AVGPOST=0.9955;ERATE=0.0007;EUR_AF=0.77;LDAF=0.7059;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39959189 rs1065029 C G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8962;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39967442 rs13412 T C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.25;AMR_AF=0.44;AN=2;ASN_AF=0.50;AVGPOST=0.9989;ERATE=0.0020;EUR_AF=0.35;LDAF=0.3838;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 39976733 rs201914085 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 39977862 rs8072866 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.82;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9032;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 39998141 rs1529933 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.69;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7646;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40010979 rs3744782 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.69;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7642;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40024023 rs7217218 A T 100 PASS AA=a;AC=2;AF=0.91;AFR_AF=0.83;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9086;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40025264 rs9912300 G T 100 PASS AA=g;AC=2;AF=0.76;AFR_AF=0.69;AMR_AF=0.84;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7642;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40025285 rs9914829 A G 100 PASS AA=g;AC=2;AF=0.91;AFR_AF=0.83;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9086;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40028450 rs8071627 A T 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.69;AMR_AF=0.84;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7646;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40042392 rs148168367 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +17 40048613 rs8065502 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.77;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8953;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40049473 rs4796736 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.77;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8953;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40146970 rs6503679 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.46;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7578;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40341909 rs79309130 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9979;ERATE=0.0008;EUR_AF=0.06;LDAF=0.0308;RSQ=0.9714;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.92 +17 40639422 rs8069972 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.10;AMR_AF=0.47;AN=2;ASN_AF=0.56;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3903;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 40689455 rs659497 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40689613 rs2071046 G C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.72;AMR_AF=0.83;AN=2;ASN_AF=0.74;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7496;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +17 40696233 rs86312 C G 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.63;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.95;LDAF=0.8843;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40705100 rs597255 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.64;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5241;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40705955 rs2676530 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.21;AMR_AF=0.24;AN=2;ASN_AF=0.03;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1795;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.45,-2.31 +17 40706906 rs605059 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.51;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=0.9946;ERATE=0.0008;EUR_AF=0.53;LDAF=0.4871;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.35,-0.01,-1.73 +17 40714804 rs615942 C A 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.45;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4743;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40716520 rs598126 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.45;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4735;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40720605 rs646174 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.51;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=0.9969;ERATE=0.0022;EUR_AF=0.53;LDAF=0.4919;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40721360 rs632758 C A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.70;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5352;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40725656 rs2292752 G C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.70;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5358;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40735469 rs1517002 T G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.53;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4986;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40737117 rs4792992 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4014;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 40766546 rs1045710 C G 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.64;AMR_AF=0.46;AN=2;ASN_AF=0.43;AVGPOST=0.9633;ERATE=0.0163;EUR_AF=0.49;LDAF=0.4993;RSQ=0.9484;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40811919 rs525911 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.71;AMR_AF=0.44;AN=2;ASN_AF=0.42;AVGPOST=0.9733;ERATE=0.0201;EUR_AF=0.48;LDAF=0.5042;RSQ=0.9652;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40811997 rs526779 G T 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.73;AMR_AF=0.45;AN=2;ASN_AF=0.41;AVGPOST=0.9588;ERATE=0.0149;EUR_AF=0.47;LDAF=0.5038;RSQ=0.9479;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-2.08 +17 40817448 rs3817331 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.33;AMR_AF=0.51;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4448;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 40818451 rs1554227 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9978;ERATE=0.0009;EUR_AF=0.52;LDAF=0.4829;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40818699 rs1046097 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4565;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40822308 rs8071056 C A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.98;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9909;ERATE=0.0007;EUR_AF=0.95;LDAF=0.9706;RSQ=0.8737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +17 40822678 rs2277618 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.54;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2337;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 40835922 rs2271029 A C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.67;AMR_AF=0.50;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5566;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40836975 rs9889373 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.90;AMR_AF=0.53;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6142;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 40841070 rs78630052 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0257;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 40842084 rs3760386 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.70;AMR_AF=0.40;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5109;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 40849842 rs1553468 A G 100 PASS AA=a;AC=2;AF=0.56;AFR_AF=0.85;AMR_AF=0.44;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5639;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41063466 rs2229611 T C 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.67;AMR_AF=0.65;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6527;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 41103938 rs534720 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9962;RSQ=0.9712;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41116234 rs690941 G A 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9504;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41132578 rs692074 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9860;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.93,-0.01 +17 41133071 rs1708875 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9480;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +17 41154817 rs11871636 A C 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7870;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41165493 rs588703 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9845;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41165878 rs13229 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9841;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +17 41332804 rs9904555 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9691;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41341027 rs117796976 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0235;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 41585657 rs2293014 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.85;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6572;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 41622740 rs2271959 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2549;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 41846964 rs1230403 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9855;RSQ=0.9368;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41879074 rs17742683 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.11;LDAF=0.0596;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 41955158 rs231521 A G 100 PASS AA=N;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9077;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41959808 rs124721 T C 100 PASS AA=N;AC=2;AF=0.92;AFR_AF=0.93;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9152;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 41960343 rs124719 T C 100 PASS AA=t;AC=2;AF=0.84;AFR_AF=0.62;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8395;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42018471 rs231473 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.54;AMR_AF=0.67;AN=2;ASN_AF=0.93;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6709;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.16,-0.03 +17 42030531 rs1058046 G C 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.48;AMR_AF=0.61;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5348;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42030743 rs229969 G C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9977;RSQ=0.4061;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.04,-0.04 +17 42084067 rs55708447 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1153;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42085150 rs228773 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.89;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9587;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.24,-0.00 +17 42085972 rs186636 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.43;AMR_AF=0.52;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4780;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 42156471 rs376816 A C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.51;AMR_AF=0.84;AN=2;ASN_AF=0.93;AVGPOST=0.9991;ERATE=0.0009;EUR_AF=0.78;LDAF=0.7673;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42157739 rs850856 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.47;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7555;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42164885 rs228757 G C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.51;AMR_AF=0.81;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7289;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42171206 rs454192 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.63;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.80;LDAF=0.7922;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.96,-0.05 +17 42239349 rs730228 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.79;AMR_AF=0.44;AN=2;ASN_AF=0.68;AVGPOST=0.9989;ERATE=0.0134;EUR_AF=0.31;LDAF=0.5356;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 42248346 rs7218599 A T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9304;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42268274 rs757430 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9347;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42329004 rs112161764 A C 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.29;AMR_AF=0.65;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.74;LDAF=0.4989;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +17 42392077 rs68030960 T C 100 PASS AA=N;AC=2;AF=0.65;AFR_AF=0.76;AMR_AF=0.57;AN=2;ASN_AF=0.92;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.41;LDAF=0.6487;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +17 42392622 rs708386 T C 100 PASS AA=N;AC=2;AF=0.62;AFR_AF=0.70;AMR_AF=0.55;AN=2;ASN_AF=0.90;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.40;LDAF=0.6226;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-4.10,-0.55,-0.15 +17 42397660 rs139114659 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0144;RSQ=0.9690;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +17 42398052 rs2011951 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.77;AMR_AF=0.57;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.6503;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42398757 rs2011895 C A 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.77;AMR_AF=0.57;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.41;LDAF=0.6505;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42400816 rs60776742 C A 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.26;AMR_AF=0.31;AN=2;ASN_AF=0.63;AVGPOST=0.9787;ERATE=0.0053;EUR_AF=0.29;LDAF=0.3805;RSQ=0.9668;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +17 42475983 rs936019 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.40;AMR_AF=0.63;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5338;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 42501692 rs1869495 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.26;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5019;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 42759327 rs201991535 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.8540;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42786213 rs61749923 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1274;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +17 42824402 rs4793144 C A 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9909;ERATE=0.0349;EUR_AF=0.42;LDAF=0.3841;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42824731 rs9912745 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.18;AMR_AF=0.53;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0015;EUR_AF=0.51;LDAF=0.4939;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42850352 rs68017435 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.28;AMR_AF=0.34;AN=2;ASN_AF=0.17;AVGPOST=0.9937;ERATE=0.0391;EUR_AF=0.39;LDAF=0.3010;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42851634 rs62066014 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.46;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.67;LDAF=0.6519;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +17 42851729 rs35936481 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6510;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.10,-0.68,-5.00 +17 42852604 rs1558083 G T 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6504;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42852610 rs1558084 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.95;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9013;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 42854208 rs1558085 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.15;AMR_AF=0.52;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42854502 rs1558086 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.15;AMR_AF=0.52;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4876;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.47 +17 42854610 rs8075210 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6504;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42855248 rs2070603 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6503;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42855472 rs2070604 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.46;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6809;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42855554 rs2070605 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6503;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 42925559 rs12164 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.84;AMR_AF=0.60;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6417;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 42929970 rs2289673 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.86;AMR_AF=0.62;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6517;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 42934415 rs58089352 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9973;ERATE=0.0044;EUR_AF=0.02;LDAF=0.0947;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 42940059 rs57404744 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0604;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 42945296 rs2120276 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.86;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6550;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 43003484 rs3169733 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.48;AMR_AF=0.31;AN=2;ASN_AF=0.14;AVGPOST=0.9853;ERATE=0.0108;EUR_AF=0.22;LDAF=0.2752;RSQ=0.9758;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 43003906 rs9911406 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=0.9960;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0874;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 43003907 rs9890538 T G 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=0.9953;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0878;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 43010064 rs57250020 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.09;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0740;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 43173516 rs8073097 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0389;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 43175906 rs2239922 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1623;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 43181287 rs4793167 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9831;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 43183028 rs1053733 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.30;AMR_AF=0.48;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5178;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 43318778 rs7218169 G C 100 PASS AA=c;AC=2;AF=0.92;AFR_AF=0.91;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=0.9242;ERATE=0.0146;EUR_AF=0.90;LDAF=0.9008;RSQ=0.6723;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.700:-5.00,-0.06,-0.88 +17 43318779 rs7219366 C G 100 PASS AA=a;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=0.9262;ERATE=0.0150;EUR_AF=0.90;LDAF=0.9012;RSQ=0.6748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.700:-5.00,-0.05,-0.93 +17 43334499 rs117103308 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0133;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 43910455 rs17689966 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.44;AMR_AF=0.58;AN=2;ASN_AF=0.84;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6135;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 43923180 rs115372537 G A 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.36;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5895;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 43923898 rs114821961 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.70;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8883;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 44061025 rs116917239 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1354;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 44067382 rs112757188 T C 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.22;LDAF=0.3242;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 44117135 rs113320341 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1604;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 44144993 rs144838667 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 44248499 rs117366359 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2389;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 44788310 rs183211 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.63;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4136;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 44950122 rs4968281 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.91;AMR_AF=0.65;AN=2;ASN_AF=0.48;AVGPOST=0.9870;ERATE=0.0238;EUR_AF=0.72;LDAF=0.6896;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0113;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45000529 rs189899 G C 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.42;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.38;LDAF=0.3615;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.09,-0.71,-5.00 +17 45000547 rs183199 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9861;ERATE=0.0039;EUR_AF=1.00;LDAF=0.9507;RSQ=0.8951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +17 45198400 rs938904 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.28;AMR_AF=0.42;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3222;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45219354 rs7220394 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0434;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45247362 rs73319503 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.34;AMR_AF=0.27;AN=2;ASN_AF=0.23;AVGPOST=0.9957;ERATE=0.1583;EUR_AF=0.29;LDAF=0.2846;RSQ=0.9871;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45266579 rs2285591 C G 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0265;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45360680 rs988684 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0557;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45367681 rs2292864 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.05;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1343;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45368337 rs15908 A C 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.46;AMR_AF=0.36;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.36;LDAF=0.4301;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 45369777 rs4642 A G 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.32;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2953;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 45369789 rs4634 G A 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.32;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2952;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 45425144 rs3851808 C T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.70;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6293;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45425287 rs71377306 C T 100 PASS AA=C;AC=1;AF=0.09;AMR_AF=0.03;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0882;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45447832 rs55853213 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0631;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45451894 rs4968318 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.70;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6277;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45468842 rs72825679 A T 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0882;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45490251 rs3883318 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1514;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45517771 rs56089045 T A 100 PASS AA=.;AC=1;AF=0.14;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1365;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45517774 rs56330182 G T 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.30;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1652;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45695832 rs3760370 C T 100 PASS AA=c;AC=1;AF=0.48;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4787;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45735975 rs1136613 G A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0531;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45750468 rs1136614 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45755810 rs4239162 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.57;AMR_AF=0.46;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4881;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45774072 rs8078309 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.75;AMR_AF=0.57;AN=2;ASN_AF=0.63;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.57;LDAF=0.6242;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 45885687 rs9907142 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.80;AMR_AF=0.88;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8647;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 45887951 rs2074189 G T 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4375;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 45888251 rs2074188 C G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.52;AMR_AF=0.46;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5437;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45894735 rs9914156 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.82;AMR_AF=0.88;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.95;LDAF=0.8683;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +17 45896478 rs878171 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.58;AMR_AF=0.76;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7496;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45897531 rs1985407 C A 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.58;AMR_AF=0.76;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7496;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45904163 rs3809869 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0016;EUR_AF=0.39;LDAF=0.3551;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 45905850 rs4793671 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9826;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 45915788 rs7350974 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9826;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46000406 rs62067380 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0978;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 46020698 rs11079804 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1476;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 46198876 rs3744346 G C 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.54;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7349;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46262171 rs2278868 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.34;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5928;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46266849 rs66753385 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0348;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 46607021 rs7226137 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46607817 rs7207109 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1317;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 46607958 rs12939811 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1138;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 46608030 rs12946855 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1335;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 46620402 rs2229302 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1207;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 46670520 rs7406798 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9370;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46688135 rs79247310 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.26;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1002;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 46688256 rs7406910 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.77;AMR_AF=0.84;AN=2;ASN_AF=0.86;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8535;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 46805443 rs9900627 A G 100 PASS AA=G;AC=2;AF=0.12;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1249;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46847364 rs2032844 C A 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.26;AMR_AF=0.37;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2459;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46868710 rs3887854 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.34;AMR_AF=0.39;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2797;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46926772 rs551605 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46939658 rs10278 C G 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2783;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 46970836 rs684682 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9849;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 47007963 rs2270576 C T 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2404;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 47036042 rs55936433 C A 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.20;AMR_AF=0.39;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2390;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.54,-0.01 +17 47038391 rs6504587 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9911;ERATE=0.0050;EUR_AF=1.00;LDAF=0.9770;RSQ=0.8657;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +17 47076551 rs2411760 G T 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.59;AMR_AF=0.83;AN=2;ASN_AF=0.73;AVGPOST=0.9516;ERATE=0.1057;EUR_AF=0.80;LDAF=0.7316;RSQ=0.9145;SNPSOURCE=LOWCOV,EXOME;THETA=0.0200;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +17 47076563 rs200451577 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.02;LDAF=0.0069;RSQ=0.9338;SNPSOURCE=EXOME;THETA=0.0076;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.07,-0.86 +17 47210429 rs7207842 A G 100 PASS AA=-;AC=1;AF=0.71;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.47;AVGPOST=0.9955;ERATE=0.0011;EUR_AF=0.78;LDAF=0.7141;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 47210506 rs7207403 C A 100 PASS AA=-;AC=1;AF=0.43;AFR_AF=0.54;AMR_AF=0.55;AN=2;ASN_AF=0.13;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4347;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 0|1:1.000:-3.52,-0.00,-5.00 +17 47219542 rs12453819 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.42;AMR_AF=0.29;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.28;LDAF=0.3706;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 47238028 rs8071836 C T 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 47241604 rs8074457 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9972;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 47284683 rs2293215 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.26;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2770;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 47297297 rs616338 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9963;RSQ=0.7195;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.05,-0.04 +17 47590176 rs201266194 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0092;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 47778793 rs8186 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0960;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 47785064 rs9908959 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.09,-0.00 +17 47788755 rs34759387 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0686;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 47795035 rs35495960 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0087;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 47888852 rs4462645 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 47903381 rs61749929 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1909;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 47917198 rs141473647 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9980;ERATE=0.0003;LDAF=0.0101;RSQ=0.9216;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48151353 rs2285524 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.09;LDAF=0.2650;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48151908 rs4793639 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.84;AMR_AF=0.89;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.91;LDAF=0.8033;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48153924 rs2301627 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.32;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.09;LDAF=0.2602;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48158685 rs55893410 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.20;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0731;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48165064 rs12951197 T C 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.40;AMR_AF=0.61;AN=2;ASN_AF=0.31;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.82;LDAF=0.5574;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48165148 rs146126922 C G 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0041;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48172779 rs7221362 A C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=0.9909;ERATE=0.0009;EUR_AF=0.70;LDAF=0.8152;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.58,-0.13 +17 48174908 rs3178055 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.50;AMR_AF=0.40;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3713;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48184288 rs847694 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.76;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=0.9994;ERATE=0.0021;EUR_AF=0.70;LDAF=0.8078;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48245269 rs59944537 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1147;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48252804 rs2696288 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.79;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9324;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 48263021 rs2249492 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.25;AMR_AF=0.67;AN=2;ASN_AF=0.51;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5213;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48265426 rs2586488 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.55;AMR_AF=0.74;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6250;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48265495 rs1800215 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9761;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.13,-0.03 +17 48266669 rs2586489 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48267291 rs2075559 G C 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.56;AMR_AF=0.65;AN=2;ASN_AF=0.51;AVGPOST=0.9971;ERATE=0.0056;EUR_AF=0.48;LDAF=0.5342;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0114;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +17 48268223 rs2734272 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48269302 rs2857396 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8952;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +17 48269426 rs2586490 C T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.69;AMR_AF=0.76;AN=2;ASN_AF=0.52;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6569;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +17 48271433 rs1007086 A G 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.47;AMR_AF=0.74;AN=2;ASN_AF=0.52;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6115;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48272055 rs2253369 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.74;AMR_AF=0.78;AN=2;ASN_AF=0.63;AVGPOST=0.9956;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7013;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.87,-0.06 +17 48275489 rs35231764 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2113;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48276971 rs2256835 G C 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.67;LDAF=0.5314;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48356260 rs6504642 G C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.66;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=0.9926;ERATE=0.0152;EUR_AF=0.59;LDAF=0.6441;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48431032 rs739990 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1430;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +17 48431197 rs739989 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.21;LDAF=0.1421;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.58,-0.00,-3.55 +17 48432324 rs12451299 G C 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1417;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48433958 rs4794136 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.49;AMR_AF=0.56;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3811;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48437456 rs6504649 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.32;AN=2;ASN_AF=0.09;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.41;LDAF=0.2728;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48445699 rs2586438 C T 100 PASS AA=c;AC=1;AF=0.61;AFR_AF=0.44;AMR_AF=0.44;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6057;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48452776 rs76372682 A C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7408;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48455985 rs2189712 A T 100 PASS AA=A;AC=2;AF=0.16;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1553;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48456193 rs12450550 T C 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1553;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48469724 rs757509 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4917;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48472270 rs3760407 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.93;AMR_AF=0.91;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7226;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48557326 rs2290862 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.91;AMR_AF=0.65;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5837;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48557348 rs2290861 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.91;AMR_AF=0.64;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5832;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48595109 rs56994118 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.73;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2626;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48595988 rs8064455 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.63;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0016;EUR_AF=0.16;LDAF=0.2339;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48597114 rs28498091 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.36;AMR_AF=0.13;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1604;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48598785 rs1380657 G A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.92;AMR_AF=0.71;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8135;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48599450 rs7216625 A T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.92;AMR_AF=0.71;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8135;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48602412 rs1106730 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.30;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1444;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48603434 rs61753813 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0174;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48606537 rs1133818 C G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.93;AMR_AF=0.71;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.73;LDAF=0.8135;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48608717 rs1064055 T C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.94;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8194;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48619272 rs111678638 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0527;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48619290 rs112657244 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0540;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.40 +17 48624523 rs9890200 A C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.79;AMR_AF=0.32;AN=2;ASN_AF=0.08;AVGPOST=0.9814;ERATE=0.0017;EUR_AF=0.35;LDAF=0.3757;RSQ=0.9746;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.200:-0.48,-0.48,-0.48 +17 48625828 rs8076470 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.79;AMR_AF=0.42;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4086;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48625928 rs8076632 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.66;AMR_AF=0.31;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3419;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48629458 rs8065903 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.96;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8676;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48652875 rs198550 A G 100 PASS AA=g;AC=2;AF=0.68;AFR_AF=0.67;AMR_AF=0.59;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.54;LDAF=0.6822;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48653354 rs12449998 C A 100 PASS AA=c;AC=2;AF=0.53;AFR_AF=0.18;AMR_AF=0.50;AN=2;ASN_AF=0.93;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.47;LDAF=0.5309;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +17 48668013 rs8064333 G C 100 PASS AA=c;AC=1;AF=0.57;AFR_AF=0.51;AMR_AF=0.46;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5670;RSQ=0.9993;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48669026 rs11079918 T C 100 PASS AA=t;AC=1;AF=0.46;AFR_AF=0.07;AMR_AF=0.41;AN=2;ASN_AF=0.91;AVGPOST=0.9960;ERATE=0.0013;EUR_AF=0.39;LDAF=0.4588;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48692881 rs8066527 C T 100 PASS AA=c;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.24;AN=2;ASN_AF=0.04;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2165;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48693760 rs4794171 G C 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.28;AN=2;ASN_AF=0.02;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2368;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48703752 rs739925 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.56;AMR_AF=0.33;AN=2;ASN_AF=0.17;AVGPOST=0.9935;ERATE=0.0012;EUR_AF=0.45;LDAF=0.3782;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48746923 rs4794176 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.88;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8172;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48752866 rs2072365 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.40;AN=2;ASN_AF=0.39;AVGPOST=0.9983;ERATE=0.0012;EUR_AF=0.35;LDAF=0.3272;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48761105 rs2277624 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2596;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48774319 rs3815378 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0430;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48776725 rs77954842 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0219;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 48821201 rs9894501 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.91;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6503;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 48821207 rs9894508 T C 100 PASS AA=t;AC=1;AF=0.45;AFR_AF=0.46;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4464;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48917333 rs9675120 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.19;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4585;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 48940422 rs4626 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.56;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6195;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 49054439 rs9332407 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.36;AMR_AF=0.47;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3743;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 49067763 rs9899816 T C 100 PASS AA=t;AC=2;AF=0.47;AFR_AF=0.53;AMR_AF=0.52;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4707;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.86,-0.00 +17 49097501 rs2286649 C A 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2285;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 49156907 rs8081821 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.32;AMR_AF=0.36;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.28;LDAF=0.2897;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 49281133 rs17574235 G A 100 PASS AA=-;AC=1;AF=0.41;AFR_AF=0.08;AMR_AF=0.41;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4141;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 49350802 rs2318789 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.14;AMR_AF=0.39;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4143;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 49371230 rs12940196 G C 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.13;AMR_AF=0.39;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4125;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 51900729 rs3803824 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.29;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2376;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 51901084 rs3803825 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8098;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 51901385 rs3803826 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.11;AMR_AF=0.39;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3720;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 51901643 rs4561518 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.80;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8071;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 51901703 rs4561519 C G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8099;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 51902252 rs3826355 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.80;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8071;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 53076799 rs1156287 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.95;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8478;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 53076986 rs11658717 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.71;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7902;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 53392852 rs2287223 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.62;AMR_AF=0.46;AN=2;ASN_AF=0.81;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5550;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 53485186 rs2286806 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0037;EUR_AF=0.53;LDAF=0.5207;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 53844847 rs35430620 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.13;AMR_AF=0.73;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6632;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 53851071 rs2960063 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.38;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8089;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 53851078 rs2912558 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.38;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 53851228 rs2960062 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.38;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 53852111 rs2960061 T C 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.19;AMR_AF=0.80;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7226;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 54450038 rs957724 C A 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.24;AMR_AF=0.73;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6682;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 54450134 rs8069322 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.35;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7198;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 54534634 rs10852985 G A 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.63;AMR_AF=0.80;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7939;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 54921494 rs3760158 A C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.62;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7449;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 54925262 rs6503775 G T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8853;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 54926511 rs2271899 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0215;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 54978794 rs205498 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.81;AMR_AF=0.71;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.75;LDAF=0.7761;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 55079471 rs12940187 T C 100 PASS AA=T;AC=2;AF=0.09;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0883;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 55950064 rs35704289 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2199;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 56083934 rs2233911 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.09;AMR_AF=0.64;AN=2;ASN_AF=0.77;AVGPOST=0.9963;ERATE=0.0024;EUR_AF=0.72;LDAF=0.5767;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.88 +17 56435885 rs2526374 G T 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.40;AMR_AF=0.45;AN=2;ASN_AF=0.45;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3979;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56492800 rs3744093 T C 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.19;AMR_AF=0.51;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3917;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56544280 rs1017089 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56581651 rs4277402 C G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8917;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56584205 rs2302189 A C 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.23;AMR_AF=0.53;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.37;LDAF=0.4085;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56585872 rs3744108 G C 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.23;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4027;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56598439 rs1057068 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.24;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.37;LDAF=0.4090;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56621286 rs8071623 G T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8779;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56621359 rs6503867 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8899;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56636854 rs7225128 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8779;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 56654690 rs1267542 T C 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.22;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4026;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 57094617 rs4932691 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.84;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.59;LDAF=0.7117;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 57725043 rs8071749 T G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 57750982 rs8065248 T C 100 PASS AA=c;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9150;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +17 57889192 rs2063353 T G 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.04;AMR_AF=0.50;AN=2;ASN_AF=0.37;AVGPOST=0.9990;ERATE=0.0007;EUR_AF=0.57;LDAF=0.3883;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 58740950 rs191317670 A G 100 PASS AA=A;AC=1;AF=0.0032;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 58786625 rs2643103 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.22;AMR_AF=0.94;AN=2;ASN_AF=0.89;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7849;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 58824567 rs7501675 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9947;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 59533868 rs3744448 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.32;AVGPOST=0.9961;ERATE=0.0008;EUR_AF=0.17;LDAF=0.2075;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.93,-0.05 +17 59534987 rs3744447 T G 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.20;AN=2;ASN_AF=0.36;AVGPOST=0.9983;ERATE=0.0079;EUR_AF=0.18;LDAF=0.2244;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0139;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 59557433 rs3744439 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.13;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9991;ERATE=0.0016;EUR_AF=0.05;LDAF=0.0890;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 59760996 rs4986763 A G 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.68;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 59761308 rs202228407 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 59763347 rs4986764 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.70;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6737;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 59763465 rs4986765 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.95;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.8090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 59857809 rs4988351 C G 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.87;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.77;LDAF=0.7741;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 59955426 rs606072 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9962;RSQ=0.9716;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 60043884 rs671347 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9958;RSQ=0.9792;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 60464688 rs9909704 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9388;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 60743806 rs73333680 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1131;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 60749533 rs8072984 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.18;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1207;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 60753904 rs4968617 A C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.60;AVGPOST=0.9973;ERATE=0.0054;EUR_AF=0.35;LDAF=0.4572;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0114;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 60758273 rs2245463 G C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.65;AMR_AF=0.95;AN=2;ASN_AF=0.93;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.98;LDAF=0.8874;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 60759340 rs2429389 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.55;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8692;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 60759347 rs2460300 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.54;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8678;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 60766224 rs2465430 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.73;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9138;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +17 60767015 rs2429387 G A 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.47;AMR_AF=0.94;AN=2;ASN_AF=0.95;AVGPOST=0.9977;ERATE=0.0019;EUR_AF=0.98;LDAF=0.8513;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +17 60767135 rs56288724 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=0.9924;ERATE=0.0006;EUR_AF=0.41;LDAF=0.3137;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-3.01,-0.47,-0.18 +17 60767151 rs740698 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.35;AMR_AF=0.52;AN=2;ASN_AF=0.67;AVGPOST=0.9919;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5403;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.64,-4.40 +17 60767461 rs2465426 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.48;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8542;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 60767974 rs4968626 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0142;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 60769803 rs3826537 A G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.32;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3433;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +17 60779025 rs2251391 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.97;AMR_AF=0.97;AN=2;ASN_AF=0.89;AVGPOST=0.9989;ERATE=0.0065;EUR_AF=0.98;LDAF=0.9506;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 60802337 rs201329810 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 60813245 rs17683602 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.20;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.43;LDAF=0.3828;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 60813627 rs2041283 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.13;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2984;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 60814273 rs9891498 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.13;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2980;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 61278229 rs117690040 T G 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0083;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61315272 rs2460111 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.92;AMR_AF=0.50;AN=2;ASN_AF=0.18;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5119;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61432774 rs4968765 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.91;AMR_AF=0.51;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5084;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61457217 rs8065950 G C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.91;AMR_AF=0.49;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5015;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61473325 rs2270133 C A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.91;AMR_AF=0.49;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5020;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61559923 rs4309 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.13;AMR_AF=0.52;AN=2;ASN_AF=0.66;AVGPOST=0.9990;ERATE=0.0027;EUR_AF=0.38;LDAF=0.4206;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61562309 rs4316 C T 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.39;AMR_AF=0.54;AN=2;ASN_AF=0.68;AVGPOST=0.9947;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5031;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61562553 rs4320 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.68;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5077;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61562774 rs4321 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5163;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +17 61564052 rs4331 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.40;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9912;ERATE=0.0165;EUR_AF=0.39;LDAF=0.4758;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61565990 rs4341 G C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5167;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61565998 rs4342 A C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5173;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61566031 rs4343 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.83;AMR_AF=0.60;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.44;LDAF=0.6184;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61573761 rs4362 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.62;AMR_AF=0.59;AN=2;ASN_AF=0.64;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.45;LDAF=0.5587;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61574492 rs4363 G A 100 PASS AA=a;AC=2;AF=0.55;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.63;AVGPOST=0.9951;ERATE=0.0019;EUR_AF=0.44;LDAF=0.5533;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 61607708 rs7221517 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.27;AMR_AF=0.33;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.38;LDAF=0.3057;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61611423 rs7225568 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.51;AMR_AF=0.47;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4728;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61621805 rs8070334 T G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.83;AMR_AF=0.53;AN=2;ASN_AF=0.35;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5785;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +17 61767045 rs201458544 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61892969 rs142666932 A T 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61987570 rs2727307 G T 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.08;AMR_AF=0.37;AN=2;ASN_AF=0.38;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3248;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 61987576 rs2246207 G A 100 PASS AA=g;AC=1;AF=0.41;AFR_AF=0.44;AMR_AF=0.40;AN=2;ASN_AF=0.38;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4101;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.85 +17 62007498 rs2070776 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.73;AMR_AF=0.55;AN=2;ASN_AF=0.45;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5995;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 62018773 rs2070720 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.61;AMR_AF=0.38;AN=2;ASN_AF=0.39;AVGPOST=0.9969;ERATE=0.0010;EUR_AF=0.38;LDAF=0.4341;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 62020348 rs2058194 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.79;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5878;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 62025238 rs13341114 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.34;LDAF=0.2916;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 62041068 rs6504191 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9961;ERATE=0.0006;EUR_AF=0.91;LDAF=0.9412;RSQ=0.9720;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +17 62042078 rs2877373 T C 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.52;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8314;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.80,-0.01 +17 62049235 rs9892013 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9926;RSQ=0.9340;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 62080969 rs4141180 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9602;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 62121480 rs196912 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.22;AMR_AF=0.61;AN=2;ASN_AF=0.68;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5896;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 62122677 rs196917 G A 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.68;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0014;EUR_AF=0.99;LDAF=0.9198;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 62125272 rs196923 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9588;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 62130129 rs74407634 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0919;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 62141455 rs187826 A G 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9593;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 62145672 rs196939 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.12;AMR_AF=0.61;AN=2;ASN_AF=0.67;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.75;LDAF=0.5631;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 62152578 rs75995183 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0299;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.51,-0.01,-5.00 +17 62157004 rs78213244 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0673;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 62157142 rs75923435 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0704;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 62855551 rs150234707 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.98;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9486;ERATE=0.0017;EUR_AF=0.93;LDAF=0.9483;RSQ=0.6441;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:1.950:-2.85,-0.45,-0.19 +17 63173959 rs11651062 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1074;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 63200441 rs76749648 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0823;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 63532692 rs190627728 G C 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.0028;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0027;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +17 63533768 rs1133683 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.57;AN=2;ASN_AF=0.33;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4494;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-2.53,-0.00,-4.10 +17 63533789 rs9915936 T C 100 PASS AA=C;AC=1;AF=0.89;AFR_AF=0.94;AMR_AF=0.91;AN=2;ASN_AF=0.82;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.90;LDAF=0.8904;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.14,-0.57,-5.00 +17 63554591 rs2240308 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.09;AMR_AF=0.47;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3473;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 63633295 rs75033823 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0092;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 64001925 rs1015098 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.24;AMR_AF=0.63;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5352;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 64023642 rs11079628 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.24;AMR_AF=0.63;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5351;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +17 64023698 rs141487547 A G 100 PASS AA=A;AC=1;AF=0.0018;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0019;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 64050007 rs11079637 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.23;AMR_AF=0.63;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5345;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 64128760 rs229854 A T 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.42;AMR_AF=0.44;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.4598;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 64171375 rs199998433 A G 100 PASS AA=A;AC=1;AF=0.0014;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 64173170 rs2159557 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.29;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.49;LDAF=0.3105;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 64208230 rs6933 G A 100 PASS AA=a;AC=2;AF=0.73;AFR_AF=0.89;AMR_AF=0.64;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.7308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 64210757 rs4581 C A 100 PASS AA=c;AC=1;AF=0.47;AFR_AF=0.54;AMR_AF=0.46;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.4739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 64213133 rs8178931 C G 100 PASS AA=c;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 64216644 rs3744317 G A 100 PASS AA=a;AC=2;AF=0.76;AFR_AF=0.93;AMR_AF=0.68;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.7564;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 64684565 rs1010546 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1083;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 64685078 rs2227857 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.39;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.36;LDAF=0.2381;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 64783081 rs6504459 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9857;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 65026886 rs11649752 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0701;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 65051180 rs2363844 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.70;AMR_AF=0.65;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.57;LDAF=0.6883;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 65052304 rs1799938 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0965;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 65104666 rs11657929 T G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.74;AMR_AF=0.60;AN=2;ASN_AF=0.88;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6746;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 65104743 rs11653020 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.93;LDAF=0.9627;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 65110436 rs2302158 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.21;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1846;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 65116491 rs12709454 T C 100 PASS AA=N;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.77;AN=2;ASN_AF=0.97;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8408;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 65212042 rs8080100 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.22;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1871;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 65717525 rs2291284 T C 100 PASS AA=T;AC=1;AF=0.08;AMR_AF=0.05;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0782;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 65720346 rs11654692 A G 100 PASS AA=a;AC=1;AF=0.45;AFR_AF=0.22;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.51;LDAF=0.4465;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 65734514 rs1542610 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.91;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9017;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 65739627 rs10127 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.29;AMR_AF=0.59;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4635;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 65882457 rs8072824 T A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.73;AMR_AF=0.90;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8734;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 65907663 rs9909489 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.38;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0900;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 65924740 rs9904157 A C 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0215;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 65955651 rs8068790 T C 100 PASS AA=C;AC=1;AF=0.89;AFR_AF=0.55;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=1.00;LDAF=0.8905;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 65989048 rs28368756 T C 100 PASS AA=C;AC=1;AF=0.94;AFR_AF=0.72;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9353;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 66246416 rs3213690 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.96;AMR_AF=0.80;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7674;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 66265367 rs199555462 T C 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.38;AMR_AF=0.32;AN=2;ASN_AF=0.23;AVGPOST=0.9843;ERATE=0.0058;EUR_AF=0.16;LDAF=0.2544;RSQ=0.9714;SNPSOURCE=EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:1.900:-0.48,-0.48,-0.48 +17 66267691 rs7222013 A T 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.66;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3313;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.13,-0.00 +17 66364749 rs1558877 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.60;AMR_AF=0.58;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 66391232 rs7342975 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.28;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1074;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 66447073 rs2302783 T C 100 PASS AA=N;AC=1;AF=0.65;AFR_AF=0.65;AMR_AF=0.64;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6537;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 66449122 rs883541 G A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.85;AMR_AF=0.70;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7184;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 66524987 rs2302230 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.88;AMR_AF=0.73;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7939;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 66526027 rs2302231 G T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.78;AMR_AF=0.72;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7711;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 66533655 rs2907373 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7870;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 66538239 rs2302234 G T 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3780;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 66539847 rs2286562 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2419;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 66596463 rs986099 C T 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=0.9943;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1849;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 66872802 rs1481 G C 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.60;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.73;LDAF=0.7899;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 66938141 rs35643726 G C 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 66982447 rs9916254 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.20;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67020328 rs10512522 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0512;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67020526 rs7221250 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.57;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1513;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67023295 rs9899818 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0511;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67023755 rs6501947 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.34;AVGPOST=0.9938;ERATE=0.0058;EUR_AF=0.68;LDAF=0.6021;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67024799 rs8066758 T A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.73;AMR_AF=0.61;AN=2;ASN_AF=0.33;AVGPOST=0.9907;ERATE=0.0109;EUR_AF=0.63;LDAF=0.5688;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67031369 rs1860448 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9533;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67031457 rs1860447 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.60;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8761;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67039645 rs61744800 C T 100 PASS AA=C;AC=2;AF=0.08;AFR_AF=0.20;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0800;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67075072 rs2302290 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.76;AMR_AF=0.58;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5558;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67077237 rs146030856 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0085;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67081732 rs2302133 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.35;AMR_AF=0.54;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4563;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67081830 rs2302134 T C 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.17;AMR_AF=0.63;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4498;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67099129 rs2364315 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.19;AMR_AF=0.49;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.61;LDAF=0.4055;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67101718 rs7212506 C T 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.39;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7701;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67108362 rs9282553 C G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1924;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67109833 rs9282554 T A 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1015;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67109894 rs9282552 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.22;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4328;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67119593 rs4603621 G C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.32;AMR_AF=0.68;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5366;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67125840 rs4968839 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.34;AMR_AF=0.68;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.70;LDAF=0.5416;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67145241 rs75706760 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1001;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67149557 rs12601012 A T 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1001;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67149973 rs10491178 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1001;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67150118 rs16973656 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1001;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67150176 rs2886232 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.88;LDAF=0.9415;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67160186 rs7208382 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4644;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67170736 rs740520 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.78;AMR_AF=0.73;AN=2;ASN_AF=0.42;AVGPOST=0.9821;ERATE=0.0133;EUR_AF=0.71;LDAF=0.6506;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67178316 rs4968849 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.82;AMR_AF=0.75;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.73;LDAF=0.6727;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67178954 rs4968851 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.74;AMR_AF=0.74;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6536;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67188668 rs8074259 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9987;RSQ=0.9316;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67189973 rs16973751 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0206;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67212423 rs9909216 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.60;AMR_AF=0.57;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5366;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67215712 rs12941264 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.66;AMR_AF=0.58;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5497;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67251995 rs78837144 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0284;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67260926 rs12449649 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3774;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67273882 rs536009 C A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.57;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0020;EUR_AF=0.86;LDAF=0.8080;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67280225 rs113812582 A C 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0320;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67282332 rs1550828 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3798;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 67293535 rs487382 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9593;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 67513003 rs2251862 C A 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.43;AMR_AF=0.37;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4278;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 67513055 rs2251855 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.44;AMR_AF=0.37;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4302;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 68172326 rs173135 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.11;LDAF=0.1409;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 70120551 rs1042667 A C 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.18;AMR_AF=0.47;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3916;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 70643702 rs142468230 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0093;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +17 70943990 rs2466517 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.66;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9128;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0110;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71189182 rs3764359 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.53;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9959;ERATE=0.0008;EUR_AF=0.55;LDAF=0.5588;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +17 71192663 rs1052706 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.27;AMR_AF=0.48;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4923;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71192873 rs11544800 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.29;AMR_AF=0.48;AN=2;ASN_AF=0.61;AVGPOST=0.9787;ERATE=0.0211;EUR_AF=0.54;LDAF=0.4923;RSQ=0.9686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.30,-0.00 +17 71196809 rs1026128 A G 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.52;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5558;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71197200 rs1026130 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71197439 rs1551036 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.15;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1343;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 71197748 rs1037256 G A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.53;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5590;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71201675 rs3829571 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.74;AMR_AF=0.96;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8866;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71231604 rs3751925 A C 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5627;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71232687 rs745143 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5631;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71232804 rs904384 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71232807 rs904383 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.51;AMR_AF=0.54;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5690;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71232881 rs745142 G C 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.51;AMR_AF=0.54;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5681;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71233130 rs11869253 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5630;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71238433 rs1566286 G A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5607;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71238525 rs1566287 A G 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5604;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71239000 rs2270726 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5608;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 71239016 rs2270727 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5613;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71239190 rs2270728 A T 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5608;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +17 71334790 rs147236031 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0019;RSQ=0.9558;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 71344889 rs9905883 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.59;AMR_AF=0.95;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8676;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +17 71346353 rs28397959 A C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.58;AMR_AF=0.95;AN=2;ASN_AF=0.88;AVGPOST=0.9942;ERATE=0.0044;EUR_AF=1.00;LDAF=0.8615;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +17 71346750 rs1995163 C G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.58;AMR_AF=0.95;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8670;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71346943 rs4969107 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.58;AMR_AF=0.96;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8674;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71386577 rs61752521 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.39;AMR_AF=0.13;AN=2;ASN_AF=0.21;AVGPOST=0.9991;ERATE=0.0020;EUR_AF=0.20;LDAF=0.2335;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 71390366 rs904381 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.04;AMR_AF=0.48;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2524;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 71397375 rs7226251 T G 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.35;AMR_AF=0.62;AN=2;ASN_AF=0.25;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4684;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +17 71418605 rs9894213 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.68;AMR_AF=0.80;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6188;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 71420035 rs6501636 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.72;AMR_AF=0.81;AN=2;ASN_AF=0.31;AVGPOST=0.9968;ERATE=0.0015;EUR_AF=0.76;LDAF=0.6408;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +17 71426656 rs1105353 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=0.30;LDAF=0.1725;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 71426670 rs1105354 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.07;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1701;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72209858 rs7206926 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.98;AMR_AF=0.71;AN=2;ASN_AF=0.75;AVGPOST=0.9865;ERATE=0.0012;EUR_AF=0.71;LDAF=0.7821;RSQ=0.9703;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +17 72240168 rs35682745 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1054;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72240177 rs35999669 T G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.63;AMR_AF=0.28;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3478;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72246101 rs3897753 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.75;AMR_AF=0.31;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3844;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72246466 rs7224615 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.57;AMR_AF=0.29;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3381;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72248363 rs4789639 C T 100 PASS AA=c;AC=1;AF=0.34;AFR_AF=0.58;AMR_AF=0.29;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3419;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72248483 rs60137033 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.57;AMR_AF=0.29;AN=2;ASN_AF=0.12;AVGPOST=0.9983;ERATE=0.0013;EUR_AF=0.37;LDAF=0.3342;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72248512 rs12600564 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0828;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72281367 rs6501706 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9619;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 72285705 rs62065706 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0790;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72285906 rs62065707 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0791;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72295966 rs34159194 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.18;LDAF=0.0782;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72297180 rs8076337 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.15;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2669;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0128;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72301432 rs8073660 A G 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.27;AMR_AF=0.37;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4013;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72305534 rs2290955 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.08;AMR_AF=0.36;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.66;LDAF=0.3656;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72308319 rs1979370 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.45;AMR_AF=0.87;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.91;LDAF=0.7830;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72308403 rs4239008 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.38;AMR_AF=0.87;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.91;LDAF=0.7665;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +17 72308410 rs4239009 C T 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.62;AMR_AF=0.91;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8474;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +17 72346736 rs12451539 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.18;AMR_AF=0.73;AN=2;ASN_AF=0.72;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.77;LDAF=0.6182;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.83,-0.00 +17 72346855 rs11077744 T C 100 PASS AA=t;AC=2;AF=0.62;AFR_AF=0.18;AMR_AF=0.73;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.77;LDAF=0.6182;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72349067 rs2280108 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.42;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.51;LDAF=0.3668;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72350277 rs2382642 T G 100 PASS AA=N;AC=2;AF=0.53;AFR_AF=0.61;AMR_AF=0.53;AN=2;ASN_AF=0.42;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5305;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72350412 rs2271535 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.08;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9956;ERATE=0.0005;EUR_AF=0.47;LDAF=0.3620;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.02 +17 72366695 rs2382647 C A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0026;EUR_AF=1.00;LDAF=0.9676;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0109;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72367843 rs11652774 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.19;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3067;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72368550 rs11658891 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.77;AMR_AF=0.52;AN=2;ASN_AF=0.41;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5721;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72443192 rs2706527 G T 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.72;AMR_AF=0.90;AN=2;ASN_AF=0.85;AVGPOST=0.9962;ERATE=0.0030;EUR_AF=0.92;LDAF=0.8525;RSQ=0.9889;SNPSOURCE=EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 72469958 rs1127737 A G 100 PASS AA=a;AC=1;AF=0.60;AFR_AF=0.91;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9780;ERATE=0.0354;EUR_AF=0.39;LDAF=0.5984;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72473553 rs7209406 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.98;AMR_AF=0.68;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.42;LDAF=0.6835;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72477385 rs1879967 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.94;AMR_AF=0.61;AN=2;ASN_AF=0.79;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.38;LDAF=0.6507;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0097;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72519798 rs1472726 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.46;AMR_AF=0.45;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4374;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72521897 rs17553512 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.40;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.55;LDAF=0.3263;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72537894 rs2140253 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.82;AMR_AF=0.41;AN=2;ASN_AF=0.27;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4960;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72541838 rs809740 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.96;AMR_AF=0.58;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.63;LDAF=0.6773;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72588326 rs493430 A C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.83;AMR_AF=0.56;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6641;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72608834 rs579238 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.37;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.31;LDAF=0.2553;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72608926 rs509574 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0014;EUR_AF=0.30;LDAF=0.2002;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72610089 rs1878061 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2372;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72613589 rs581157 T G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.64;AMR_AF=0.35;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.44;LDAF=0.4438;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72691928 rs2034310 T C 100 PASS AA=t;AC=2;AF=0.72;AFR_AF=0.65;AMR_AF=0.72;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.81;LDAF=0.7205;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72692030 rs151168048 A C 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0068;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72700943 rs35489971 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.26;AMR_AF=0.64;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.82;LDAF=0.6430;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72784932 rs2016126 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5638;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72791266 rs9910463 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.29;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9951;ERATE=0.0246;EUR_AF=0.82;LDAF=0.7452;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0347;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72791618 rs7221435 A G 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.71;AMR_AF=0.89;AN=2;ASN_AF=0.75;AVGPOST=0.9806;ERATE=0.0279;EUR_AF=0.89;LDAF=0.8091;RSQ=0.9546;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.38,-0.02 +17 72832032 rs72851753 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.22;AMR_AF=0.18;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2879;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72838649 rs3744215 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.30;AMR_AF=0.20;AN=2;ASN_AF=0.40;AVGPOST=0.9936;ERATE=0.0022;EUR_AF=0.30;LDAF=0.3135;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72844165 rs3744193 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.24;AMR_AF=0.19;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2930;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72848800 rs117147802 C G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.24;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=0.9714;ERATE=0.0022;EUR_AF=0.28;LDAF=0.2915;RSQ=0.9493;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.86,-0.26,-0.34 +17 72851133 rs689730 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.78;AMR_AF=0.81;AN=2;ASN_AF=0.75;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.90;LDAF=0.8203;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +17 72859078 rs690371 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.49;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3214;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72860253 rs552432 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.28;AMR_AF=0.19;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3166;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72861974 rs2467577 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2134;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72861991 rs2070919 C T 100 PASS AA=c;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2138;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72862593 rs690514 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.39;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2124;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72862705 rs2070918 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.32;AMR_AF=0.59;AN=2;ASN_AF=0.27;AVGPOST=0.9983;ERATE=0.0007;EUR_AF=0.66;LDAF=0.4692;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72863030 rs1688149 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2153;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 72869078 rs492095 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.39;AVGPOST=0.9937;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2394;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +17 72927123 rs6501741 G T 100 PASS AA=g;AC=1;AF=0.54;AFR_AF=0.22;AMR_AF=0.61;AN=2;ASN_AF=0.57;AVGPOST=0.9922;ERATE=0.0050;EUR_AF=0.69;LDAF=0.5418;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 72937605 rs7210616 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.35;AMR_AF=0.68;AN=2;ASN_AF=0.62;AVGPOST=0.9934;ERATE=0.0033;EUR_AF=0.76;LDAF=0.6139;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.89,-0.00 +17 72937851 rs9890664 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.48;AMR_AF=0.74;AN=2;ASN_AF=0.70;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.73;LDAF=0.6665;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72938100 rs1542752 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.96;AMR_AF=0.88;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.86;LDAF=0.9150;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72939446 rs4789110 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.47;AMR_AF=0.64;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5380;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72939663 rs8069015 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.42;AMR_AF=0.63;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5258;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72943126 rs8066909 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.08;AVGPOST=0.9957;ERATE=0.0015;EUR_AF=0.52;LDAF=0.3162;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72948369 rs17853024 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9680;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72951845 rs9903414 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.38;AMR_AF=0.85;AN=2;ASN_AF=0.47;AVGPOST=0.9974;ERATE=0.0069;EUR_AF=0.95;LDAF=0.6771;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +17 72952017 rs9906160 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9394;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 72956124 rs3744198 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.17;AMR_AF=0.34;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.46;LDAF=0.2749;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73096951 rs4238978 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.25;AMR_AF=0.50;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5210;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +17 73125173 rs2291027 A G 100 PASS AA=A;AC=2;AF=0.40;AFR_AF=0.10;AMR_AF=0.49;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.64;LDAF=0.4005;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.10,-0.00 +17 73127683 rs4788867 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.44;AMR_AF=0.54;AN=2;ASN_AF=0.29;AVGPOST=0.9755;ERATE=0.0024;EUR_AF=0.67;LDAF=0.4995;RSQ=0.9627;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.15,-0.48,-0.18 +17 73142764 rs62620707 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0151;RSQ=0.9502;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73208182 rs12946479 C T 100 PASS AA=-;AC=1;AF=0.67;AFR_AF=0.32;AMR_AF=0.69;AN=2;ASN_AF=0.87;AVGPOST=0.9833;ERATE=0.0229;EUR_AF=0.75;LDAF=0.6730;RSQ=0.9746;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73221439 rs2291029 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.66;AMR_AF=0.93;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8967;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73228101 rs899318 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.77;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9823;ERATE=0.0595;EUR_AF=0.87;LDAF=0.8617;RSQ=0.9446;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73230856 rs9988 C T 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.87;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8679;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73240836 rs4789156 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73242895 rs2242230 A G 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.39;AMR_AF=0.78;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73257986 rs8075276 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.22;AMR_AF=0.77;AN=2;ASN_AF=0.89;AVGPOST=0.9926;ERATE=0.0037;EUR_AF=0.82;LDAF=0.6947;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.01 +17 73269530 rs1809352 A G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.73;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8953;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73269676 rs4789164 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.05;AMR_AF=0.63;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5915;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73279624 rs7213318 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.73;AMR_AF=0.93;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9116;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73279700 rs4788882 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73316679 rs8079197 G C 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.10;AMR_AF=0.66;AN=2;ASN_AF=0.90;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.74;LDAF=0.6266;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73328773 rs1529844 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73485033 rs11867527 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.89;AMR_AF=0.72;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7747;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73488794 rs4078259 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.59;AMR_AF=0.64;AN=2;ASN_AF=0.47;AVGPOST=0.9989;ERATE=0.0117;EUR_AF=0.84;LDAF=0.6509;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73489220 rs7215753 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +17 73489567 rs4078474 C G 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.49;AMR_AF=0.59;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6097;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73491484 rs8082606 C T 100 PASS AA=C;AC=2;AF=0.07;AFR_AF=0.10;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0700;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73494963 rs9894026 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.88;AMR_AF=0.71;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7706;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73497794 rs9892311 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.98;AMR_AF=0.72;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7949;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73498483 rs7503373 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.98;AMR_AF=0.73;AN=2;ASN_AF=0.47;AVGPOST=0.9547;ERATE=0.0119;EUR_AF=0.90;LDAF=0.7680;RSQ=0.9227;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +17 73498623 rs7502835 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.09;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9625;ERATE=0.0423;EUR_AF=0.74;LDAF=0.4849;RSQ=0.9533;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.17 +17 73499697 rs7207376 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.89;AMR_AF=0.72;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7726;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73500073 rs72851933 G T 100 PASS AA=G;AC=2;AF=0.07;AFR_AF=0.12;AMR_AF=0.09;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0731;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.54,-0.01 +17 73500263 rs140662379 C T 100 PASS AA=C;AC=2;AF=0.07;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0689;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-1.36,-0.38,-0.27 +17 73500288 rs112890467 G T 100 PASS AA=G;AC=2;AF=0.07;AFR_AF=0.11;AMR_AF=0.09;AN=2;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0716;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-1.88,-0.40,-0.23 +17 73502645 rs72851936 G A 100 PASS AA=G;AC=2;AF=0.07;AFR_AF=0.11;AMR_AF=0.09;AN=2;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0724;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73504416 rs6501815 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.99;AMR_AF=0.72;AN=2;ASN_AF=0.54;AVGPOST=0.9978;ERATE=0.0012;EUR_AF=0.90;LDAF=0.7929;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +17 73512884 rs8079373 T G 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.37;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1616;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.73,-0.09 +17 73513156 rs8074291 G A 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.37;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1626;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +17 73513289 rs6501818 C G 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.37;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1615;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +17 73513619 rs56895494 C A 100 PASS AA=C;AC=2;AF=0.10;AFR_AF=0.11;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1024;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73518284 rs6501820 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.97;AMR_AF=0.70;AN=2;ASN_AF=0.51;AVGPOST=0.9798;ERATE=0.0035;EUR_AF=0.89;LDAF=0.7763;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.11,-0.47,-0.18 +17 73518328 rs77247739 A C 100 PASS AA=A;AC=2;AF=0.07;AFR_AF=0.11;AMR_AF=0.10;AN=2;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.09;LDAF=0.0744;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.89,-0.39,-0.33 +17 73539631 rs6501822 A G 100 PASS AA=a;AC=2;AF=0.78;AFR_AF=0.74;AMR_AF=0.75;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7847;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73552185 rs1671036 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.12;AMR_AF=0.42;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4196;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73554756 rs66614718 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.09;AN=2;AVGPOST=0.9967;ERATE=0.0003;EUR_AF=0.21;LDAF=0.0946;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-3.85,-0.00,-5.00 +17 73559563 rs1671028 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2737;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73564962 rs34001927 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.14;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2187;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73565171 rs1671021 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.90;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4502;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73565262 rs2305526 T A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.59;AVGPOST=0.9938;ERATE=0.0005;EUR_AF=0.96;LDAF=0.8376;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73566561 rs2305525 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.14;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.19;LDAF=0.1313;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +17 73567801 rs148020757 G A 100 PASS AA=G;AC=1;AF=0.0037;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0038;RSQ=0.9715;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73567846 rs1661715 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.65;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3267;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73568055 rs1661714 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.32;AMR_AF=0.21;AN=2;ASN_AF=0.14;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2312;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73570718 rs1126939 C G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.68;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3318;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73570756 rs1661712 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.68;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3319;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73570774 rs1671016 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.61;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2871;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.92 +17 73571030 rs1042861 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.89;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4502;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73625286 rs820190 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.15;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2500;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73625430 rs4788902 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.15;AMR_AF=0.61;AN=2;ASN_AF=0.81;AVGPOST=0.9907;ERATE=0.0012;EUR_AF=0.60;LDAF=0.5576;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73625478 rs820191 T C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9907;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73626817 rs820194 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9851;ERATE=0.0035;EUR_AF=0.40;LDAF=0.4056;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73626829 rs820195 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9905;RSQ=0.9711;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.85,-0.01 +17 73627539 rs820196 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=0.9789;ERATE=0.0120;EUR_AF=0.25;LDAF=0.2574;RSQ=0.9594;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73627565 rs820197 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9902;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73698557 rs820232 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73702402 rs820229 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9616;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73720900 rs820167 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9793;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +17 73725298 rs1661674 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.34;AMR_AF=0.24;AN=2;ASN_AF=0.43;AVGPOST=0.9977;ERATE=0.0009;EUR_AF=0.27;LDAF=0.3236;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73725301 rs34598265 C T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.34;AMR_AF=0.24;AN=2;ASN_AF=0.43;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3223;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73725304 rs1661675 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.34;AMR_AF=0.24;AN=2;ASN_AF=0.43;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3223;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 73732810 rs820177 A C 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.69;AMR_AF=0.78;AN=2;ASN_AF=0.55;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.77;LDAF=0.6976;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.71 +17 73746146 rs820387 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.61;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=0.9957;ERATE=0.0010;EUR_AF=0.86;LDAF=0.7674;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73746370 rs820388 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=0.9969;ERATE=0.0009;EUR_AF=0.53;LDAF=0.5246;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73750859 rs8669 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.48;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3795;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 73752999 rs2249613 C G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.79;AMR_AF=0.56;AN=2;ASN_AF=0.61;AVGPOST=0.9760;ERATE=0.0599;EUR_AF=0.65;LDAF=0.6511;RSQ=0.9610;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73753503 rs871443 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.15;AMR_AF=0.76;AN=2;ASN_AF=0.59;AVGPOST=0.9871;ERATE=0.0069;EUR_AF=0.79;LDAF=0.5875;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73753661 rs9367 C T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.51;AMR_AF=0.78;AN=2;ASN_AF=0.53;AVGPOST=0.9960;ERATE=0.0062;EUR_AF=0.80;LDAF=0.6629;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73759552 rs7209235 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.53;AMR_AF=0.72;AN=2;ASN_AF=0.82;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.71;LDAF=0.6997;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +17 73949540 rs1135640 G C 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.17;AMR_AF=0.63;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5731;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73951864 rs10852766 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.16;AMR_AF=0.63;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5708;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 73997474 rs2069528 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.95;AMR_AF=0.74;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.73;LDAF=0.8226;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74007846 rs2290251 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2737;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74011452 rs2071195 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.08;AMR_AF=0.38;AN=2;ASN_AF=0.70;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3957;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74011721 rs2665970 C A 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0024;EUR_AF=0.38;LDAF=0.4632;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-0.34,-0.26,-5.00 +17 74014628 rs2071193 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.31;AMR_AF=0.46;AN=2;ASN_AF=0.74;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4893;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74014668 rs2071192 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.62;AMR_AF=0.63;AN=2;ASN_AF=0.74;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.63;LDAF=0.6569;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74015590 rs2244371 C T 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6366;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74015595 rs2244370 T C 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.57;AMR_AF=0.63;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6457;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74018655 rs2598417 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.96;AMR_AF=0.71;AN=2;ASN_AF=0.82;AVGPOST=0.9952;ERATE=0.0005;EUR_AF=0.71;LDAF=0.7943;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +17 74019572 rs2257388 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.85;AMR_AF=0.66;AN=2;ASN_AF=0.76;AVGPOST=0.9364;ERATE=0.0454;EUR_AF=0.65;LDAF=0.7154;RSQ=0.9011;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.88,-0.06 +17 74036573 rs2260516 A T 100 PASS AA=A;AC=2;AF=0.16;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1639;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74039867 rs1530834 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.93;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5704;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74056413 rs2665998 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.92;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5694;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74066447 rs2443168 T A 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.93;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5772;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74068543 rs200249656 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9835;ERATE=0.0019;EUR_AF=0.01;LDAF=0.0111;RSQ=0.4052;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.850:-0.17,-0.49,-2.84 +17 74152366 rs881502 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.27;AMR_AF=0.39;AN=2;ASN_AF=0.23;AVGPOST=0.9964;ERATE=0.0155;EUR_AF=0.37;LDAF=0.3140;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74160914 rs16968638 G C 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74161533 rs16968642 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1750;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74162506 rs1376356 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1737;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74163821 rs2289603 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1755;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74208424 rs9911122 G A 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3141;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74261677 rs2585751 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.87;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9154;ERATE=0.0058;EUR_AF=0.50;LDAF=0.6445;RSQ=0.8693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.77,-0.08 +17 74276067 rs164010 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.39;AMR_AF=0.47;AN=2;ASN_AF=0.59;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4427;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74283253 rs8072620 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.67;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4400;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74286082 rs4789273 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.67;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4415;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74286106 rs4789274 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.67;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4416;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74286173 rs17509527 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.85;AMR_AF=0.51;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5737;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74287204 rs2279052 C G 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.54;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4100;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74287229 rs149430693 T C 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74287389 rs2279053 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.71;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4507;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74287594 rs2279054 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.51;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0028;EUR_AF=0.25;LDAF=0.4004;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74288421 rs6501878 A G 100 PASS AA=a;AC=1;AF=0.33;AFR_AF=0.52;AMR_AF=0.23;AN=2;ASN_AF=0.47;AVGPOST=0.9750;ERATE=0.0004;EUR_AF=0.14;LDAF=0.3225;RSQ=0.9680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-1.42,-0.02,-5.00 +17 74288422 rs6501879 T C 100 PASS AA=t;AC=1;AF=0.33;AFR_AF=0.51;AMR_AF=0.23;AN=2;ASN_AF=0.47;AVGPOST=0.9748;ERATE=0.0008;EUR_AF=0.14;LDAF=0.3221;RSQ=0.9674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.44,-0.02,-5.00 +17 74289500 rs3803737 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.71;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4502;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74289705 rs6501880 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.68;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4447;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74289839 rs6501881 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.71;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4502;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74289875 rs6501882 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.71;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4502;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74289908 rs6501883 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.71;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4502;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74290097 rs7225131 T A 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.71;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4502;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74307737 rs10459 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.31;AMR_AF=0.17;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2670;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74381555 rs2247856 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.04;AMR_AF=0.37;AN=2;ASN_AF=0.17;AVGPOST=0.9835;ERATE=0.0004;EUR_AF=0.46;LDAF=0.2778;RSQ=0.9707;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.52 +17 74381567 rs346803 G A 100 PASS AA=A;AC=1;AF=0.90;AFR_AF=0.84;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9941;ERATE=0.0006;EUR_AF=0.86;LDAF=0.8987;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.25 +17 74387284 rs3803739 C T 100 PASS AA=c;AC=1;AF=0.40;AFR_AF=0.12;AMR_AF=0.45;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.60;LDAF=0.3994;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74475024 rs3744045 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.43;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.92;LDAF=0.7987;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 74475975 rs67160445 C A 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.25;AMR_AF=0.54;AN=2;ASN_AF=0.60;AVGPOST=0.9880;ERATE=0.0046;EUR_AF=0.46;LDAF=0.4642;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74476045 rs3826287 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.26;AMR_AF=0.56;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4764;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +17 74477620 rs12943385 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.09;AN=2;ASN_AF=0.19;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1368;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74524651 rs78346785 T G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.50;AN=2;ASN_AF=0.54;AVGPOST=0.9836;ERATE=0.0004;EUR_AF=0.37;LDAF=0.4194;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.90,-0.00 +17 74524652 rs8077736 T G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.50;AN=2;ASN_AF=0.54;AVGPOST=0.9833;ERATE=0.0004;EUR_AF=0.37;LDAF=0.4211;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.84,-0.00 +17 74533438 rs114197491 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9947;ERATE=0.0005;LDAF=0.0132;RSQ=0.8314;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.900:-0.10,-0.70,-5.00 +17 74732507 rs237058 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 74733099 rs237057 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.46;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9947;ERATE=0.0012;EUR_AF=0.91;LDAF=0.8144;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +17 74878259 rs571264 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.62;AMR_AF=0.33;AN=2;ASN_AF=0.40;AVGPOST=0.9938;ERATE=0.0023;EUR_AF=0.15;LDAF=0.3484;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 74878420 rs1663456 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.62;AMR_AF=0.42;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.4204;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.70 +17 74921129 rs34056052 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0633;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74922636 rs12450749 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.55;AMR_AF=0.73;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7007;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74922652 rs11653088 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.55;AMR_AF=0.73;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7006;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 74944709 rs9894270 T C 100 PASS AA=C;AC=1;AF=0.92;AFR_AF=0.88;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=0.9958;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9212;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 75190846 rs673918 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 75190962 rs674402 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3434;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 75277611 rs8070026 A C 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.33;AMR_AF=0.08;AN=2;ASN_AF=0.08;AVGPOST=0.9865;ERATE=0.0008;EUR_AF=0.06;LDAF=0.1327;RSQ=0.9591;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.47 +17 75303298 rs4789439 T C 100 PASS AA=c;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.84;AN=2;ASN_AF=0.99;AVGPOST=0.9973;ERATE=0.0007;EUR_AF=0.89;LDAF=0.9070;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 75369578 rs7217986 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.05;AVGPOST=0.9838;ERATE=0.0009;EUR_AF=0.49;LDAF=0.3233;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.15,-0.48,-0.18 +17 75484781 rs370531 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.85;AMR_AF=0.44;AN=2;ASN_AF=0.49;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5581;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 75489015 rs188747 T C 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.49;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5180;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 75494705 rs2627223 A G 100 PASS AA=a;AC=2;AF=0.92;AFR_AF=0.78;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9832;ERATE=0.0096;EUR_AF=0.94;LDAF=0.9129;RSQ=0.9232;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.69,-0.00 +17 75494746 rs1059485 A G 100 PASS AA=a;AC=2;AF=0.55;AFR_AF=0.31;AMR_AF=0.56;AN=2;ASN_AF=0.90;AVGPOST=0.9508;ERATE=0.0148;EUR_AF=0.44;LDAF=0.5442;RSQ=0.9362;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.04,-0.04 +17 76115353 rs2748428 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.90;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.52;LDAF=0.7245;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76121318 rs12449858 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.27;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1409;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76130575 rs7208422 A T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9958;ERATE=0.0093;EUR_AF=0.49;LDAF=0.5437;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 76131070 rs12452890 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.69;AMR_AF=0.65;AN=2;ASN_AF=0.44;AVGPOST=0.9993;ERATE=0.0011;EUR_AF=0.53;LDAF=0.5620;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 76133908 rs16970849 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.25;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1595;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76134828 rs7221365 C A 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.75;AMR_AF=0.68;AN=2;ASN_AF=0.46;AVGPOST=0.9991;ERATE=0.0007;EUR_AF=0.56;LDAF=0.5981;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 76137198 rs369764 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9975;RSQ=0.6912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.19,-0.00 +17 76170830 rs1065768 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.35;AMR_AF=0.30;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2934;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.13 +17 76178748 rs1143697 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.88;AMR_AF=0.65;AN=2;ASN_AF=0.64;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6363;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76183043 rs1071664 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.75;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5447;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.13 +17 76198754 rs35822441 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.82;AMR_AF=0.70;AN=2;ASN_AF=0.69;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.66;LDAF=0.7100;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.44 +17 76210367 rs9904341 G C 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4104;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +17 76219591 rs2071214 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9155;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 76219783 rs2239680 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.16;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2323;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 76394449 rs2292644 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.59;AMR_AF=0.63;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5858;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76395421 rs2292643 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.59;AMR_AF=0.63;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5862;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76395430 rs2292642 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.59;AMR_AF=0.63;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5863;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76395634 rs2292641 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1565;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 76396963 rs3817294 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.59;AMR_AF=0.63;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5886;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76794981 rs2279308 A G 100 PASS AA=g;AC=2;AF=0.55;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0032;EUR_AF=0.59;LDAF=0.5512;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 76798362 rs2306526 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.53;LDAF=0.4454;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +17 76799795 rs1057040 G A 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.36;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9973;ERATE=0.0012;EUR_AF=0.53;LDAF=0.4422;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 76799860 rs3088040 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.62;AMR_AF=0.46;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.56;LDAF=0.5737;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 76799898 rs9302885 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.60;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5697;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 76817090 rs3744793 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.51;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.42;LDAF=0.3625;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 76970879 rs3744166 A G 100 PASS AA=a;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=0.78;AVGPOST=0.9711;ERATE=0.0282;EUR_AF=0.92;LDAF=0.8729;RSQ=0.8971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 76993546 rs8077024 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.40;AMR_AF=0.38;AN=2;ASN_AF=0.63;AVGPOST=0.9950;ERATE=0.0008;EUR_AF=0.28;LDAF=0.4171;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.91,-0.00,-5.00 +17 77040128 rs4789922 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.21;AMR_AF=0.31;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.18;LDAF=0.2947;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77040185 rs4789853 G C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9910;ERATE=0.0060;EUR_AF=0.29;LDAF=0.4131;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +17 77042718 rs11077409 C T 100 PASS AA=c;AC=1;AF=0.30;AFR_AF=0.19;AMR_AF=0.32;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3011;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77043574 rs11077410 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.56;AVGPOST=0.9969;ERATE=0.0016;EUR_AF=0.17;LDAF=0.3273;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77071002 rs8076010 C G 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.57;AVGPOST=0.9123;ERATE=0.0088;EUR_AF=0.25;LDAF=0.3778;RSQ=0.8557;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.75,-0.01 +17 77071040 rs56107536 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9617;ERATE=0.0021;EUR_AF=0.12;LDAF=0.1679;RSQ=0.8999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.52 +17 77073566 rs3744181 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2042;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77073776 rs62063818 A T 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0512;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77073941 rs56353542 T C 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0461;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77075673 rs3744185 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.57;AMR_AF=0.33;AN=2;ASN_AF=0.36;AVGPOST=0.9950;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3407;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77076302 rs62063824 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0430;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77076440 rs3744186 G T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9881;ERATE=0.0031;EUR_AF=0.20;LDAF=0.3259;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77076960 rs2889533 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.24;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0984;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77076962 rs2889532 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.24;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0984;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0156;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77078109 rs1317421 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.51;AMR_AF=0.24;AN=2;ASN_AF=0.28;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2880;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77704912 rs8074547 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.65;AMR_AF=0.35;AN=2;ASN_AF=0.54;AVGPOST=0.9920;ERATE=0.0020;EUR_AF=0.37;LDAF=0.4744;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.43 +17 77705045 rs8074728 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.72;AMR_AF=0.36;AN=2;ASN_AF=0.54;AVGPOST=0.9936;ERATE=0.0016;EUR_AF=0.37;LDAF=0.4896;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.53 +17 77709339 rs11657217 C G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.47;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2761;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77752143 rs150471517 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9958;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0182;RSQ=0.9072;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77752147 rs56050112 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.41;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9868;ERATE=0.0014;EUR_AF=0.27;LDAF=0.2442;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77757845 rs8080971 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.18;AMR_AF=0.03;AN=2;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.0477;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77758597 rs76915888 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.14;AMR_AF=0.03;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0375;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +17 77758691 rs3751957 G A 100 PASS AA=g;AC=2;AF=0.37;AFR_AF=0.62;AMR_AF=0.31;AN=2;ASN_AF=0.38;AVGPOST=0.9971;ERATE=0.0006;EUR_AF=0.23;LDAF=0.3721;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 77768654 rs4889891 C A 100 PASS AA=a;AC=2;AF=0.55;AFR_AF=0.79;AMR_AF=0.69;AN=2;ASN_AF=0.36;AVGPOST=0.9879;ERATE=0.0015;EUR_AF=0.48;LDAF=0.5509;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +17 77769398 rs61013672 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.09;AN=2;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0715;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-1.07,-0.04 +17 77808961 rs61737009 G A 100 PASS AA=g;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0580;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77926491 rs4889804 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9956;ERATE=0.0005;EUR_AF=0.29;LDAF=0.1763;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77983967 rs59152781 A G 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.05;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0183;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77983988 rs149833287 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0053;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77984008 rs144832549 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0051;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 77984141 rs35922784 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.21;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2502;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 77984252 rs115353540 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9994;ERATE=0.0005;LDAF=0.0053;RSQ=0.9495;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.45 +17 78013697 rs185006459 G A 100 PASS AA=G;AC=1;AF=0.0023;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0023;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +17 78013724 rs2289527 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9698;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78021037 rs7207441 A G 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.66;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2969;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78021214 rs7212525 T C 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.67;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2973;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.46,-0.00 +17 78022378 rs2289530 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.24;LDAF=0.2305;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78024094 rs2289533 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.24;LDAF=0.2304;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.13,-0.00,-3.47 +17 78055758 rs35578653 T G 100 PASS AA=t;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.43;AN=2;ASN_AF=0.30;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=0.52;LDAF=0.4613;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78071052 rs12952612 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.70;AMR_AF=0.57;AN=2;ASN_AF=0.67;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.76;LDAF=0.6913;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78081578 rs185883087 G A 100 PASS AA=G;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9986;ERATE=0.0004;LDAF=0.0034;RSQ=0.8551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,-0.01,-1.81 +17 78090928 rs2304832 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.98;AMR_AF=0.61;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7597;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78157995 rs4889990 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.47;AMR_AF=0.29;AN=2;ASN_AF=0.21;AVGPOST=0.9945;ERATE=0.0038;EUR_AF=0.37;LDAF=0.3364;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78158063 rs4889991 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.90;AMR_AF=0.67;AN=2;ASN_AF=0.69;AVGPOST=0.9844;ERATE=0.0040;EUR_AF=0.83;LDAF=0.7835;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.03 +17 78171944 rs2066964 G C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.27;AN=2;ASN_AF=0.51;AVGPOST=0.9964;ERATE=0.0010;EUR_AF=0.40;LDAF=0.3871;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0221;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78176233 rs8069255 T A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.34;AN=2;ASN_AF=0.54;AVGPOST=0.9917;ERATE=0.0011;EUR_AF=0.50;LDAF=0.4361;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78178170 rs4889996 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.30;AMR_AF=0.34;AN=2;ASN_AF=0.54;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4383;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.70,-0.01,-5.00 +17 78178182 rs4889836 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.30;AMR_AF=0.34;AN=2;ASN_AF=0.54;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4383;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.72,-0.00,-5.00 +17 78178189 rs4889997 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.27;AMR_AF=0.34;AN=2;ASN_AF=0.54;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4302;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78178830 rs11653893 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.33;AN=2;ASN_AF=0.54;AVGPOST=0.9970;ERATE=0.0016;EUR_AF=0.49;LDAF=0.4276;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +17 78178893 rs11652075 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.25;AMR_AF=0.33;AN=2;ASN_AF=0.53;AVGPOST=0.9984;ERATE=0.0011;EUR_AF=0.49;LDAF=0.4223;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-1.91,-0.01,-5.00 +17 78187954 rs6565647 A G 100 PASS AA=g;AC=1;AF=0.47;AFR_AF=0.63;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=0.9987;ERATE=0.0006;EUR_AF=0.39;LDAF=0.4678;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78188963 rs4889839 G A 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.65;AMR_AF=0.43;AN=2;ASN_AF=0.66;AVGPOST=0.9867;ERATE=0.0116;EUR_AF=0.52;LDAF=0.5698;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +17 78191030 rs9900502 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.29;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0930;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.42,-0.21 +17 78191036 rs9900509 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.30;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0926;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.29,-0.31 +17 78201783 rs6565653 T G 100 PASS AA=N;AC=2;AF=0.71;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.97;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.50;LDAF=0.7072;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +17 78210944 rs8070283 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.59;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7586;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78219065 rs7406843 C A 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.19;AMR_AF=0.70;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6171;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78219100 rs7406844 C T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.54;AMR_AF=0.77;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.69;LDAF=0.7424;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78223103 rs8064518 C A 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.62;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7886;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78261730 rs17853714 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1163;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.42,-0.02,-1.50 +17 78261805 rs7215243 A G 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.59;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2691;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.24,-0.03 +17 78262161 rs17857135 T C 100 PASS AA=C;AC=2;AF=0.19;AFR_AF=0.43;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1866;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78263429 rs62076476 C G 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.45;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9867;ERATE=0.0271;EUR_AF=0.23;LDAF=0.2390;RSQ=0.9743;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78263486 rs17853989 T C 100 PASS AA=t;AC=2;AF=0.20;AFR_AF=0.43;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1979;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78263514 rs17853713 G A 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.42;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1961;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78265667 rs7503557 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.42;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.06;LDAF=0.2055;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78268496 rs9890495 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.23;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1467;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78280030 rs8066993 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.60;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3551;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78292945 rs6565666 G A 100 PASS AA=g;AC=1;AF=0.20;AFR_AF=0.34;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9989;ERATE=0.0144;EUR_AF=0.20;LDAF=0.2041;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0142;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78444658 rs12943620 T G 100 PASS AA=a;AC=2;AF=0.83;AFR_AF=0.96;AMR_AF=0.83;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8293;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78444679 rs28364735 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.18;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2245;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78445702 rs1131609 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.84;AMR_AF=0.82;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7942;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78449948 rs144443274 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9931;ERATE=0.0004;EUR_AF=0.18;LDAF=0.0907;RSQ=0.9687;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.22,-0.00,-5.00 +17 78599562 rs17848685 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0027;EUR_AF=0.23;LDAF=0.1229;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78765219 rs4969429 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.78;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7505;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78820329 rs3751945 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.15;AMR_AF=0.54;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.64;LDAF=0.4555;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78857537 rs201281314 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0004;LDAF=0.0007;RSQ=0.7117;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78896488 rs2271602 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.34;AMR_AF=0.30;AN=2;ASN_AF=0.48;AVGPOST=0.9984;ERATE=0.0007;EUR_AF=0.33;LDAF=0.3666;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.28 +17 78896529 rs2271603 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.17;AMR_AF=0.32;AN=2;ASN_AF=0.20;AVGPOST=0.9967;ERATE=0.0028;EUR_AF=0.33;LDAF=0.2572;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78919558 rs1567962 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.37;AMR_AF=0.32;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3798;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78921117 rs4969231 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.29;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2185;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78969590 rs66738175 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6060;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78970779 rs12951796 G C 100 PASS AA=g;AC=2;AF=0.65;AFR_AF=0.92;AMR_AF=0.65;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6535;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78970909 rs4969334 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6147;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +17 78971156 rs60323363 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.25;AMR_AF=0.38;AN=2;ASN_AF=0.36;AVGPOST=0.9856;ERATE=0.0143;EUR_AF=0.35;LDAF=0.3346;RSQ=0.9731;SNPSOURCE=EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 78971176 rs9989475 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.48;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2399;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 78971182 rs9989472 C T 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.74;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6096;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +17 78972864 rs11870458 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.92;AMR_AF=0.65;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6540;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 79009030 rs145195680 T G 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.20;AMR_AF=0.01;AN=2;AVGPOST=0.9969;ERATE=0.0003;LDAF=0.0461;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-1.98,-0.00,-3.70 +17 79009153 rs8073224 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=0.9731;ERATE=0.0011;EUR_AF=0.87;LDAF=0.8899;RSQ=0.8972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-2.56,-0.44,-0.20 +17 79077957 rs34057293 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.85;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7813;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 79093275 rs8082016 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.21;AMR_AF=0.02;AN=2;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0651;RSQ=0.9701;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79093427 rs62073018 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.23;AMR_AF=0.49;AN=2;ASN_AF=0.67;AVGPOST=0.9319;ERATE=0.0052;EUR_AF=0.54;LDAF=0.4967;RSQ=0.9077;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-3.13,-0.47,-0.18 +17 79093822 rs36000545 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.22;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9710;ERATE=0.0020;EUR_AF=0.38;LDAF=0.3678;RSQ=0.9524;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +17 79095144 rs8073904 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.84;AVGPOST=0.9891;ERATE=0.0012;EUR_AF=0.86;LDAF=0.7984;RSQ=0.9739;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 79095629 rs7503604 C A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.43;AMR_AF=0.63;AN=2;ASN_AF=0.60;AVGPOST=0.8813;ERATE=0.0181;EUR_AF=0.51;LDAF=0.5323;RSQ=0.8151;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.17 +17 79108141 rs4969397 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.77;AMR_AF=0.88;AN=2;ASN_AF=0.99;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.80;LDAF=0.8562;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.83,-0.01,-5.00 +17 79108344 rs55660414 C T 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.03;AN=2;AVGPOST=0.9958;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0297;RSQ=0.9438;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.79 +17 79165171 rs869370 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.07;AMR_AF=0.60;AN=2;ASN_AF=0.68;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4490;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79166103 rs870187 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.65;AMR_AF=0.33;AN=2;ASN_AF=0.14;AVGPOST=0.9920;ERATE=0.0006;EUR_AF=0.47;LDAF=0.4014;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.06,-0.00,-3.47 +17 79170576 rs1542961 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.0017;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2467;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.750:-0.20,-0.45,-2.25 +17 79171967 rs2659016 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9655;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.94,-0.01 +17 79172716 rs73356006 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0188;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.05,-0.04,-5.00 +17 79173184 rs2659015 T C 100 PASS AA=t;AC=2;AF=0.93;AFR_AF=0.83;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9351;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +17 79173224 rs2725419 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.76;AMR_AF=0.95;AN=2;ASN_AF=0.92;AVGPOST=0.9985;ERATE=0.0015;EUR_AF=0.96;LDAF=0.9033;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +17 79173398 rs906176 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.15;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4556;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +17 79174221 rs2466773 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.83;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.97;LDAF=0.9333;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.40,-0.02 +17 79176017 rs73356021 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0106;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79180519 rs112159819 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79182778 rs62075318 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.05;AMR_AF=0.59;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4329;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79193657 rs73356059 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.20;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0567;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79193730 rs8067409 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.20;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0569;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79202956 rs2048057 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.09;AMR_AF=0.61;AN=2;ASN_AF=0.69;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4638;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79219452 rs59820101 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.15;AMR_AF=0.02;AN=2;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0403;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79219566 rs57072484 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.02;AN=2;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0418;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79220224 rs2725405 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.05;AMR_AF=0.48;AN=2;ASN_AF=0.72;AVGPOST=0.9951;ERATE=0.0005;EUR_AF=0.44;LDAF=0.4342;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79225000 rs66535907 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.24;AMR_AF=0.04;AN=2;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0724;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:0.650:-0.00,-2.56,-5.00 +17 79225092 rs66961966 C G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.30;AMR_AF=0.04;AN=2;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0862;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79244802 rs2292184 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.75;AMR_AF=0.38;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4314;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79249997 rs9898133 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.75;AMR_AF=0.38;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4293;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +17 79478019 rs1139405 G A 100 PASS AA=g;AC=1;AF=0.77;AFR_AF=0.61;AMR_AF=0.79;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7735;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79478916 rs9910792 G T 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.45;AMR_AF=0.48;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5486;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79495519 rs2075720 C T 100 PASS AA=N;AC=2;AF=0.75;AFR_AF=0.61;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=0.9886;ERATE=0.0009;EUR_AF=0.80;LDAF=0.7526;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.77,-0.08 +17 79532654 rs3934711 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.31;AN=2;ASN_AF=0.06;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1869;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79534593 rs55730623 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1261;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79536001 rs115485207 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0183;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79589242 rs6565604 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.67;AMR_AF=0.61;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5965;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79596811 rs9894429 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.77;AMR_AF=0.62;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.6229;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79618059 rs8477 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.61;AMR_AF=0.54;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.5329;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79634774 rs61742303 A T 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.11;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1119;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79634813 rs11546632 T C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.11;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1120;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79637349 rs10438817 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9964;ERATE=0.0005;EUR_AF=0.96;LDAF=0.9810;RSQ=0.9193;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 79637367 rs7226091 C G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.38;AMR_AF=0.16;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2502;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79638805 rs11150805 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.11;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1116;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79639198 rs7502870 C T 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.38;AMR_AF=0.16;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2497;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79650181 rs34815730 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.39;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.25;LDAF=0.2614;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79650675 rs8080624 C G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.40;AMR_AF=0.17;AN=2;ASN_AF=0.23;AVGPOST=0.9940;ERATE=0.0010;EUR_AF=0.24;LDAF=0.2617;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +17 79650828 rs8066889 T G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.39;AMR_AF=0.17;AN=2;ASN_AF=0.24;AVGPOST=0.9835;ERATE=0.0043;EUR_AF=0.24;LDAF=0.2641;RSQ=0.9679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.42 +17 79657673 rs12451387 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.11;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.16;LDAF=0.1340;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79662950 rs148054575 C T 100 PASS AA=C;AC=1;AF=0.0041;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79663931 rs8070488 T C 100 PASS AA=t;AC=1;AF=0.26;AFR_AF=0.39;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2617;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79682558 rs2072700 T C 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.52;AMR_AF=0.45;AN=2;ASN_AF=0.33;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.41;LDAF=0.4205;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 79682650 rs8071492 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.11;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1106;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79683997 rs34675304 T G 100 PASS AA=t;AC=1;AF=0.20;AFR_AF=0.30;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=0.9752;ERATE=0.0346;EUR_AF=0.21;LDAF=0.2057;RSQ=0.9305;SNPSOURCE=EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79860661 rs199704942 C A 100 PASS AA=C;AC=1;AF=0.0041;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9971;ERATE=0.0008;LDAF=0.0053;RSQ=0.7627;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +17 79872129 rs1879568 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 79872241 rs1879569 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9866;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 79891147 rs61747618 T C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +17 79891156 rs35589179 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79893962 rs34419046 G A 100 PASS AA=g;AC=1;AF=0.73;AFR_AF=0.38;AMR_AF=0.83;AN=2;ASN_AF=0.67;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.97;LDAF=0.7354;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79912103 rs4796851 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.25;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3947;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79914661 rs35872546 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.22;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.52;LDAF=0.3837;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-3.12,-0.00,-5.00 +17 79915647 rs35069988 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.22;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.52;LDAF=0.3853;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79954544 rs8074498 T A 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.30;AMR_AF=0.48;AN=2;ASN_AF=0.21;AVGPOST=0.9942;ERATE=0.0007;EUR_AF=0.57;LDAF=0.4005;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 79974731 rs13087 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.77;AMR_AF=0.59;AN=2;ASN_AF=0.29;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5555;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79977813 rs4969471 C G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.49;AVGPOST=0.9866;ERATE=0.0021;EUR_AF=0.71;LDAF=0.6994;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.300:-5.00,-0.70,-0.10 +17 79986062 rs61360272 C T 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0101;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.99,-0.05 +17 79986961 rs73999344 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0133;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79994019 rs8067668 A G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.62;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2080;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79994026 rs6502047 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.62;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2080;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79994600 rs61739740 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.61;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2075;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 79995320 rs113680823 A G 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.60;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9804;ERATE=0.0026;EUR_AF=0.11;LDAF=0.2095;RSQ=0.9623;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:0.950:-0.19,-0.46,-2.42 +17 80006957 rs12948507 A C 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.32;AVGPOST=0.9991;ERATE=0.0040;EUR_AF=0.67;LDAF=0.5607;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80007018 rs12939972 T C 100 PASS AA=t;AC=1;AF=0.60;AFR_AF=0.80;AMR_AF=0.66;AN=2;ASN_AF=0.32;AVGPOST=0.9984;ERATE=0.0031;EUR_AF=0.65;LDAF=0.5980;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80007887 rs9915228 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.68;AMR_AF=0.64;AN=2;ASN_AF=0.32;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5663;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80007897 rs9915742 G T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.72;AMR_AF=0.64;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5763;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80008392 rs9916764 G T 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.70;AMR_AF=0.63;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5649;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80008676 rs4464142 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9907;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 80011975 rs34809889 G A 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0991;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.98 +17 80012449 rs11077966 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1055;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80012769 rs11655185 G A 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1047;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80012997 rs35085155 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1007;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80014861 rs4969484 T G 100 PASS AA=g;AC=1;AF=0.59;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.32;AVGPOST=0.9972;ERATE=0.0014;EUR_AF=0.64;LDAF=0.5921;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80017898 rs111336032 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0056;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80019207 rs11542331 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0632;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80039028 rs4246445 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.80;AMR_AF=0.73;AN=2;ASN_AF=0.46;AVGPOST=0.9921;ERATE=0.0006;EUR_AF=0.75;LDAF=0.6790;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.44 +17 80040034 rs2228306 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0301;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80040048 rs9898060 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0288;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80043349 rs17848939 C T 100 PASS AA=c;AC=1;AF=0.44;AFR_AF=0.49;AMR_AF=0.37;AN=2;ASN_AF=0.36;AVGPOST=0.9720;ERATE=0.0026;EUR_AF=0.49;LDAF=0.4377;RSQ=0.9575;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.69 +17 80044180 rs146800506 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0004;LDAF=0.0106;RSQ=0.9731;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80047641 rs4969486 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0558;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-1.03,-0.13,-0.77 +17 80048961 rs17848927 C T 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.0302;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80195582 rs9303026 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9981;RSQ=0.9510;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 80207452 rs60906556 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9984;ERATE=0.0005;LDAF=0.0129;RSQ=0.9496;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.750:-2.38,-0.01,-1.68 +17 80275253 rs3176829 T C 100 PASS AA=c;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9910;ERATE=0.0020;EUR_AF=0.80;LDAF=0.8838;RSQ=0.9668;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-3.08,-0.47,-0.18 +17 80280865 rs11077986 G A 100 PASS AA=g;AC=1;AF=0.40;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.57;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4004;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +17 80320561 rs7502620 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.45;AMR_AF=0.42;AN=2;ASN_AF=0.33;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3631;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80332251 rs11654140 T C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.23;AN=2;ASN_AF=0.0017;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.28;LDAF=0.1907;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.97 +17 80350331 rs11903 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.23;AMR_AF=0.39;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0014;EUR_AF=0.22;LDAF=0.2798;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80352234 rs62079522 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.21;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1815;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80352303 rs62079523 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1865;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80367206 rs62080965 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.30;LDAF=0.1428;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80402296 rs7221125 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.33;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9948;ERATE=0.0182;EUR_AF=0.26;LDAF=0.4788;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80540585 rs2306759 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.27;AN=2;ASN_AF=0.34;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3085;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80544930 rs9914529 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.13;LDAF=0.2288;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80545156 rs6502124 A G 100 PASS AA=a;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9642;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 80583239 rs78549359 C T 100 PASS AA=-;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0297;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80585033 rs2291392 T A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.93;AMR_AF=0.87;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8281;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 80622344 rs2279392 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=0.9967;ERATE=0.0030;EUR_AF=0.29;LDAF=0.2883;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80674643 rs2250000 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9981;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9936;RSQ=0.8737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +17 80674791 rs183144630 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0004;LDAF=0.0102;RSQ=0.9829;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80696410 rs2253149 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9953;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +17 80696542 rs2253132 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 80696547 rs2253131 T A 100 PASS AA=T;AC=2;AF=0.11;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1087;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 80708601 rs1056534 C G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.71;AMR_AF=0.62;AN=2;ASN_AF=0.64;AVGPOST=0.9957;ERATE=0.0019;EUR_AF=0.59;LDAF=0.6358;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 80789628 rs8074277 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1320;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80828057 rs3744161 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.34;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5547;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 80878389 rs1471197 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9944;RSQ=0.8809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.80,-0.08 +17 80887244 rs1127986 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.24;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=0.9973;ERATE=0.0013;EUR_AF=0.28;LDAF=0.2436;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 80887358 rs201850842 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80890638 rs898095 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5540;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80895253 rs8079398 G A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.88;AMR_AF=0.45;AN=2;ASN_AF=0.56;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5690;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 80895933 rs3785522 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9865;ERATE=0.0038;EUR_AF=0.84;LDAF=0.9073;RSQ=0.9404;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 81006387 rs1143006 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.24;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3021;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +17 81009622 rs59686903 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.19;AVGPOST=0.9849;ERATE=0.0018;EUR_AF=0.13;LDAF=0.1238;RSQ=0.9451;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.800:-0.03,-1.14,-5.00 +17 81009636 rs57923322 T G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.15;AN=2;ASN_AF=0.30;AVGPOST=0.9885;ERATE=0.0011;EUR_AF=0.23;LDAF=0.2165;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.650:-0.06,-0.87,-5.00 +17 81050982 rs7501742 G C 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.60;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.66;LDAF=0.5587;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +17 81051007 rs7502442 G T 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.69;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6080;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 103517 rs183360 A C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 105444 rs2541594 C T 100 PASS AA=.;AC=2;AF=0.57;AFR_AF=0.36;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5731;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 108585 rs216598 T C 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7856;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 110165 rs216600 T C 100 PASS AA=.;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8407;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 112513 rs216604 T C 100 PASS AA=.;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.72;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8394;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 115041 rs2288490 C T 100 PASS AA=.;AC=1;AF=0.42;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.57;AVGPOST=0.9976;ERATE=0.0025;EUR_AF=0.33;LDAF=0.4205;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 304514 rs3213508 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.12;AMR_AF=0.21;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2022;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 312253 rs10903013 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.65;AMR_AF=0.29;AN=2;ASN_AF=0.51;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.17;LDAF=0.3852;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 313406 rs7189326 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.63;AMR_AF=0.30;AN=2;ASN_AF=0.46;AVGPOST=0.9930;ERATE=0.0021;EUR_AF=0.19;LDAF=0.3786;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 319398 rs67082465 C G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.33;AVGPOST=0.9917;ERATE=0.0076;EUR_AF=0.08;LDAF=0.1706;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 319511 rs739999 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.62;AMR_AF=0.24;AN=2;ASN_AF=0.34;AVGPOST=0.9979;ERATE=0.0093;EUR_AF=0.08;LDAF=0.2948;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 320759 rs9806942 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.34;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1650;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 322934 rs9940585 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.19;AMR_AF=0.68;AN=2;ASN_AF=0.67;AVGPOST=0.9435;ERATE=0.0014;EUR_AF=0.64;LDAF=0.5562;RSQ=0.9252;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.77 +16 333146 rs421195 C T 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9933;ERATE=0.0005;EUR_AF=0.10;LDAF=0.0492;RSQ=0.9470;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:0.900:-0.05,-0.93,-5.00 +16 334890 rs419949 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.19;AMR_AF=0.11;AN=2;AVGPOST=0.9946;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1235;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 335373 rs2685127 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.11;LDAF=0.0934;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 336396 rs400037 G A 100 PASS AA=g;AC=1;AF=0.18;AFR_AF=0.36;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1807;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 336660 rs11647490 G A 100 PASS AA=g;AC=1;AF=0.60;AFR_AF=0.32;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=0.9903;ERATE=0.0005;EUR_AF=0.60;LDAF=0.5954;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 339415 rs387467 G T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.40;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1948;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 347184 rs214252 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.42;AMR_AF=0.20;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.21;LDAF=0.2203;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 347696 rs185789621 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9985;ERATE=0.0003;LDAF=0.0086;RSQ=0.9455;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 348222 rs214250 C T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.42;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2173;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.44 +16 359953 rs2301522 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.92;AMR_AF=0.59;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6012;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 396264 rs1805105 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.90;AMR_AF=0.54;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5837;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 419092 rs3830160 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.88;AMR_AF=0.62;AN=2;ASN_AF=0.51;AVGPOST=0.9976;ERATE=0.0007;EUR_AF=0.55;LDAF=0.6263;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 449162 rs7185254 T C 100 PASS AA=t;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4173;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 449345 rs763151 G C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.68;AMR_AF=0.40;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4587;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 449659 rs14293 G A 100 PASS AA=g;AC=1;AF=0.43;AFR_AF=0.61;AMR_AF=0.40;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0027;EUR_AF=0.37;LDAF=0.4321;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 450309 rs5841 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.47;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9956;ERATE=0.0038;EUR_AF=0.36;LDAF=0.3896;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0098;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 570454 rs11863276 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.84;AMR_AF=0.68;AN=2;ASN_AF=0.99;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.56;LDAF=0.7546;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 570557 rs11537754 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.84;AMR_AF=0.68;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7540;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 570623 rs2071978 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.38;AMR_AF=0.59;AN=2;ASN_AF=0.56;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4978;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 601632 rs3213574 T C 100 PASS AA=c;AC=1;AF=0.68;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.80;AVGPOST=0.9883;ERATE=0.0031;EUR_AF=0.54;LDAF=0.6840;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 602032 rs79077651 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9774;ERATE=0.0007;EUR_AF=0.0013;LDAF=0.0493;RSQ=0.8297;SNPSOURCE=LOWCOV,EXOME;THETA=0.0097;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.46 +16 602046 rs7196821 T C 100 PASS AA=t;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9747;ERATE=0.0008;EUR_AF=0.93;LDAF=0.9558;RSQ=0.7793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.30,-0.02 +16 602313 rs9930550 C A 100 PASS AA=a;AC=1;AF=0.57;AFR_AF=0.61;AMR_AF=0.53;AN=2;ASN_AF=0.81;AVGPOST=0.8325;ERATE=0.0510;EUR_AF=0.37;LDAF=0.5584;RSQ=0.7494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.46 +16 602595 rs9922777 G C 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.37;AVGPOST=0.8457;ERATE=0.0602;EUR_AF=0.13;LDAF=0.2970;RSQ=0.7285;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +16 602672 rs79942802 C T 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9724;ERATE=0.0032;EUR_AF=0.0013;LDAF=0.0447;RSQ=0.7464;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 0|1:0.850:-1.39,-0.02,-5.00 +16 615326 rs59985111 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.26;AMR_AF=0.51;AN=2;ASN_AF=0.61;AVGPOST=0.9595;ERATE=0.0006;EUR_AF=0.47;LDAF=0.4627;RSQ=0.9421;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:0.900:-0.06,-0.90,-5.00 +16 624114 rs2071979 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.52;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5206;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +16 624713 rs4984669 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.54;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=0.9947;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5270;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 632198 rs916416 T A 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.51;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9952;ERATE=0.0012;EUR_AF=0.46;LDAF=0.5176;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.21,-0.42,-5.00 +16 632225 rs4006748 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9902;ERATE=0.0024;EUR_AF=0.45;LDAF=0.5109;RSQ=0.9855;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 633125 rs1045277 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.51;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5195;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 633353 rs710924 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.47;AMR_AF=0.47;AN=2;ASN_AF=0.57;AVGPOST=0.9798;ERATE=0.0054;EUR_AF=0.41;LDAF=0.4712;RSQ=0.9715;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 633354 rs710925 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.57;AVGPOST=0.9825;ERATE=0.0005;EUR_AF=0.41;LDAF=0.4768;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 677629 rs2269557 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.27;AMR_AF=0.40;AN=2;ASN_AF=0.61;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3795;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 681280 rs4984905 G T 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.61;AVGPOST=0.9964;ERATE=0.0005;EUR_AF=0.26;LDAF=0.3301;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.01,-0.00,-4.10 +16 682566 rs2269561 T C 100 PASS AA=t;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.38;AN=2;ASN_AF=0.60;AVGPOST=0.9966;ERATE=0.0007;EUR_AF=0.26;LDAF=0.3317;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 700644 rs13337278 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.41;AMR_AF=0.12;AN=2;ASN_AF=0.30;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.09;LDAF=0.2254;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 700970 rs2076142 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.24;AMR_AF=0.39;AN=2;ASN_AF=0.67;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3904;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 701296 rs2076143 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.25;AMR_AF=0.39;AN=2;ASN_AF=0.67;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3933;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 701303 rs2076144 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.09;AMR_AF=0.38;AN=2;ASN_AF=0.67;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3525;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 701656 rs11642546 C T 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.25;AMR_AF=0.39;AN=2;ASN_AF=0.66;AVGPOST=0.9855;ERATE=0.0058;EUR_AF=0.28;LDAF=0.3882;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 703721 rs9936879 A C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.88;AMR_AF=0.54;AN=2;ASN_AF=0.98;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.38;LDAF=0.6773;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 705360 rs3803697 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.54;AN=2;ASN_AF=0.98;AVGPOST=0.9965;ERATE=0.0007;EUR_AF=0.38;LDAF=0.6701;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-3.08,-0.47,-0.18 +16 705795 rs12599798 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.36;AMR_AF=0.12;AN=2;ASN_AF=0.31;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.10;LDAF=0.2155;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.57,-0.01,-5.00 +16 705844 rs8051645 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.84;AMR_AF=0.54;AN=2;ASN_AF=0.98;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.38;LDAF=0.6667;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +16 705920 rs9930754 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.67;AVGPOST=0.9967;ERATE=0.0006;EUR_AF=0.28;LDAF=0.3976;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-3.80,-0.00,-5.00 +16 706267 rs9933039 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.16;AMR_AF=0.10;AN=2;ASN_AF=0.30;AVGPOST=0.9951;ERATE=0.0009;EUR_AF=0.07;LDAF=0.1557;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.66 +16 706534 rs28485323 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.26;AMR_AF=0.39;AN=2;ASN_AF=0.67;AVGPOST=0.9949;ERATE=0.0010;EUR_AF=0.27;LDAF=0.3931;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 707748 rs36022186 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.68;AVGPOST=0.9839;ERATE=0.0029;EUR_AF=0.28;LDAF=0.3605;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.41,-0.01,-1.78 +16 708275 rs45613635 C A 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.67;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.27;LDAF=0.3544;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 709001 rs4984906 C A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.87;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9965;ERATE=0.0021;EUR_AF=0.37;LDAF=0.6727;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 709152 rs7184667 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.65;AMR_AF=0.16;AN=2;ASN_AF=0.30;AVGPOST=0.9976;ERATE=0.0012;EUR_AF=0.10;LDAF=0.2868;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 709157 rs7194532 T C 100 PASS AA=t;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.38;LDAF=0.6699;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +16 711326 rs9932282 G C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.37;LDAF=0.6672;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +16 711572 rs8062682 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.67;AVGPOST=0.9964;ERATE=0.0005;EUR_AF=0.27;LDAF=0.3540;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 711582 rs8062685 C G 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.37;LDAF=0.6676;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 711712 rs3177415 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.84;AMR_AF=0.55;AN=2;ASN_AF=0.97;AVGPOST=0.9841;ERATE=0.0023;EUR_AF=0.37;LDAF=0.6582;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 711905 rs2301426 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.86;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.37;LDAF=0.6689;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 712867 rs1057835 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.37;LDAF=0.6675;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +16 715847 rs3752494 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9952;ERATE=0.0006;EUR_AF=0.37;LDAF=0.6657;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +16 715990 rs7190775 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.37;LDAF=0.6677;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 716273 rs11866949 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.76;AMR_AF=0.17;AN=2;ASN_AF=0.32;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.10;LDAF=0.3188;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 716287 rs9934288 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.31;AVGPOST=0.9954;ERATE=0.0004;EUR_AF=0.06;LDAF=0.1560;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 716428 rs3743909 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.54;AN=2;ASN_AF=0.98;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.37;LDAF=0.6667;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 717523 rs3752493 G T 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.98;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.6678;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 717544 rs3752492 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.60;AMR_AF=0.15;AN=2;ASN_AF=0.31;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.10;LDAF=0.2750;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 718514 rs7204542 C G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.63;AMR_AF=0.56;AN=2;ASN_AF=0.31;AVGPOST=0.9795;ERATE=0.0049;EUR_AF=0.65;LDAF=0.5380;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 719592 rs11557858 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.53;AMR_AF=0.13;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2523;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 720152 rs3752487 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.23;AMR_AF=0.10;AN=2;ASN_AF=0.29;AVGPOST=0.9990;ERATE=0.0016;EUR_AF=0.07;LDAF=0.1648;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 720960 rs3743912 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.30;AMR_AF=0.11;AN=2;ASN_AF=0.30;AVGPOST=0.9976;ERATE=0.0016;EUR_AF=0.09;LDAF=0.1971;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 720986 rs1139897 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.05;AMR_AF=0.36;AN=2;ASN_AF=0.68;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3449;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 722331 rs3177338 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.77;AMR_AF=0.52;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0023;EUR_AF=0.38;LDAF=0.6497;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 722548 rs1128550 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.88;AMR_AF=0.54;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.38;LDAF=0.6808;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 723647 rs1045716 C G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.88;AMR_AF=0.54;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.38;LDAF=0.6797;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +16 735794 rs11640115 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.72;AVGPOST=0.9969;ERATE=0.0059;EUR_AF=0.29;LDAF=0.4101;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 735921 rs763053 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.59;AMR_AF=0.41;AN=2;ASN_AF=0.71;AVGPOST=0.9990;ERATE=0.0026;EUR_AF=0.29;LDAF=0.4853;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 746884 rs4984683 A C 100 PASS AA=a;AC=1;AF=0.40;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.71;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3952;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 746914 rs4984915 G A 100 PASS AA=g;AC=1;AF=0.39;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.71;AVGPOST=0.9993;ERATE=0.0020;EUR_AF=0.28;LDAF=0.3933;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 747454 rs12922098 T C 100 PASS AA=t;AC=1;AF=0.40;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.71;AVGPOST=0.9883;ERATE=0.0015;EUR_AF=0.28;LDAF=0.3973;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.53,-0.15 +16 771750 rs3752555 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.67;AMR_AF=0.58;AN=2;ASN_AF=0.79;AVGPOST=0.9859;ERATE=0.0014;EUR_AF=0.48;LDAF=0.6191;RSQ=0.9785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +16 772061 rs55956436 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.46;AMR_AF=0.56;AN=2;ASN_AF=0.77;AVGPOST=0.9936;ERATE=0.0014;EUR_AF=0.49;LDAF=0.5695;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.02,-1.28 +16 772141 rs11867009 G C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.66;AMR_AF=0.57;AN=2;ASN_AF=0.79;AVGPOST=0.9958;ERATE=0.0006;EUR_AF=0.49;LDAF=0.6182;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +16 774063 rs74968560 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.13;AN=2;ASN_AF=0.30;AVGPOST=0.9245;ERATE=0.0208;EUR_AF=0.09;LDAF=0.1651;RSQ=0.7937;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 774520 rs4984921 C T 100 PASS AA=N;AC=2;AF=0.56;AFR_AF=0.43;AMR_AF=0.55;AN=2;ASN_AF=0.77;AVGPOST=0.9946;ERATE=0.0005;EUR_AF=0.48;LDAF=0.5557;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.67,-0.00 +16 774692 rs2071950 A G 100 PASS AA=N;AC=2;AF=0.64;AFR_AF=0.69;AMR_AF=0.59;AN=2;ASN_AF=0.81;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6423;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.56,-0.00 +16 775947 rs12446058 G C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1353;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-0.02,-1.36,-5.00 +16 775954 rs55810015 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9920;ERATE=0.0031;EUR_AF=0.20;LDAF=0.1222;RSQ=0.9736;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.600:-0.06,-0.86,-5.00 +16 775955 rs12448312 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.12;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9905;ERATE=0.0045;EUR_AF=0.21;LDAF=0.1252;RSQ=0.9686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.900:-0.06,-0.88,-5.00 +16 777627 rs7188886 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9964;ERATE=0.0010;EUR_AF=0.22;LDAF=0.1327;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.21 +16 778024 rs1406814 T C 100 PASS AA=t;AC=1;AF=0.49;AFR_AF=0.58;AMR_AF=0.45;AN=2;ASN_AF=0.76;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.26;LDAF=0.4943;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 778158 rs1406815 C G 100 PASS AA=c;AC=1;AF=0.45;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.76;AVGPOST=0.9375;ERATE=0.0030;EUR_AF=0.26;LDAF=0.4319;RSQ=0.9123;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.800:-0.48,-0.48,-0.48 +16 778820 rs12448432 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.17;AMR_AF=0.41;AN=2;ASN_AF=0.76;AVGPOST=0.9982;ERATE=0.0020;EUR_AF=0.26;LDAF=0.3960;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 781633 rs3829492 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.76;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3833;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.44 +16 782397 rs12443803 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.0035;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1123;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 784765 rs9928077 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.70;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3754;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 784920 rs9932304 A G 100 PASS AA=N;AC=2;AF=0.65;AFR_AF=0.72;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=0.9990;ERATE=0.0011;EUR_AF=0.51;LDAF=0.6529;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 789618 rs10794640 G A 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.17;AMR_AF=0.39;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3730;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 789761 rs3752556 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.58;AMR_AF=0.44;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.24;LDAF=0.4908;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 815350 rs184742355 T C 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9983;ERATE=0.0007;LDAF=0.0059;RSQ=0.8737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +16 815549 rs75279195 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.06;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0219;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 815565 rs77260498 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.06;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0220;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 815628 rs1737340 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.98;LDAF=0.9886;RSQ=0.9026;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +16 816072 rs3765320 T C 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0233;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 816287 rs3765321 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0234;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 816294 rs3765322 T G 100 PASS AA=t;AC=1;AF=0.44;AFR_AF=0.85;AMR_AF=0.33;AN=2;ASN_AF=0.42;AVGPOST=0.9947;ERATE=0.0038;EUR_AF=0.24;LDAF=0.4359;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 818555 rs2272905 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.06;AVGPOST=0.9987;ERATE=0.0011;EUR_AF=0.0026;LDAF=0.0226;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.89 +16 837310 rs531278 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.98;AMR_AF=0.71;AN=2;ASN_AF=1.00;AVGPOST=0.9827;ERATE=0.0008;EUR_AF=0.70;LDAF=0.8394;RSQ=0.9544;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-0.89,-0.39,-0.33 +16 839184 rs117479929 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.28;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0971;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-0.17,-0.49,-5.00 +16 839262 rs569951 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9946;RSQ=0.8802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.50,-0.01 +16 839269 rs77682584 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.22;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=0.9953;ERATE=0.0014;EUR_AF=0.02;LDAF=0.0997;RSQ=0.9785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.13 +16 840307 rs3765262 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.28;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0967;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 840378 rs3765263 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.65;AMR_AF=0.34;AN=2;ASN_AF=0.58;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4351;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 840597 rs3765265 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.28;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0953;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 842706 rs742320 G A 100 PASS AA=g;AC=1;AF=0.23;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.32;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.18;LDAF=0.2258;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 842921 rs577688 G C 100 PASS AA=g;AC=1;AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9956;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0192;RSQ=0.9108;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-0.17,-0.50,-5.00 +16 845638 rs140777025 G A 100 PASS AA=g;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=0.9968;ERATE=0.0008;LDAF=0.0217;RSQ=0.9345;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.07,-0.84 +16 845742 rs118113142 G A 100 PASS AA=g;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0203;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 845819 rs2294446 A G 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.36;AMR_AF=0.09;AN=2;ASN_AF=0.09;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.01;LDAF=0.1228;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.36 +16 845901 rs2982244 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9978;RSQ=0.7108;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 846804 rs79959913 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0202;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 847654 rs546305 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.0013;LDAF=0.0019;RSQ=0.7043;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +16 847791 rs2294452 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.07;AVGPOST=0.9878;ERATE=0.0023;EUR_AF=0.0026;LDAF=0.0289;RSQ=0.8319;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 848755 rs36073541 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.04;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0571;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 855676 rs78564080 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.20;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0798;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 855717 rs1005190 C G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.85;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=0.9917;ERATE=0.0019;EUR_AF=0.26;LDAF=0.4779;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 961051 rs2277893 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.59;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3181;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1004694 rs3751666 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.77;AMR_AF=0.46;AN=2;ASN_AF=0.41;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4884;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1021001 rs13334376 C A 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.15;AN=2;ASN_AF=0.09;AVGPOST=0.9650;ERATE=0.0031;EUR_AF=0.21;LDAF=0.2011;RSQ=0.9171;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.44,-0.20,-2.07 +16 1034675 rs36079112 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.12;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9925;ERATE=0.0006;EUR_AF=0.10;LDAF=0.0794;RSQ=0.9614;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-2.36,-0.01,-1.75 +16 1034676 rs35880735 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9936;ERATE=0.0006;EUR_AF=0.10;LDAF=0.0796;RSQ=0.9675;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-2.40,-0.01,-1.73 +16 1034834 rs237674 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1034954 rs11542178 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.58;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9875;ERATE=0.0012;EUR_AF=0.31;LDAF=0.3080;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 1129866 rs12596873 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0106;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1129912 rs642249 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=0.94;AVGPOST=0.9946;ERATE=0.0019;EUR_AF=0.98;LDAF=0.9543;RSQ=0.9518;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.92,-0.01 +16 1252369 rs61734410 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.22;AMR_AF=0.41;AN=2;ASN_AF=0.85;AVGPOST=0.9606;ERATE=0.0007;EUR_AF=0.31;LDAF=0.4440;RSQ=0.9510;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1257731 rs12930875 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.84;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9738;ERATE=0.0043;EUR_AF=0.71;LDAF=0.8290;RSQ=0.9329;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.59,-0.01 +16 1258033 rs41292285 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0067;RSQ=0.9479;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 1260021 rs8056494 G T 100 PASS AA=T;AC=1;AF=0.90;AFR_AF=0.94;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9959;ERATE=0.0005;EUR_AF=0.82;LDAF=0.8980;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.74 +16 1260481 rs8063574 T C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.95;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.82;LDAF=0.9005;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1260767 rs2738897 G A 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.56;AMR_AF=0.59;AN=2;ASN_AF=0.90;AVGPOST=0.9936;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6365;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1261119 rs2738899 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.65;AMR_AF=0.69;AN=2;ASN_AF=0.90;AVGPOST=0.9919;ERATE=0.0015;EUR_AF=0.63;LDAF=0.7172;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1261219 rs2753326 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.90;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7329;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1261222 rs2753325 A G 100 PASS AA=a;AC=1;AF=0.73;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.90;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7331;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1261282 rs4984637 T C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.94;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8973;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1268494 rs2745136 C T 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.69;AMR_AF=0.68;AN=2;ASN_AF=0.91;AVGPOST=0.9974;ERATE=0.0006;EUR_AF=0.63;LDAF=0.7250;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.11 +16 1269029 rs2738893 T C 100 PASS AA=t;AC=1;AF=0.72;AFR_AF=0.67;AMR_AF=0.68;AN=2;ASN_AF=0.91;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=0.63;LDAF=0.7200;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.71,-0.09 +16 1270162 rs1054645 G A 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.70;AMR_AF=0.68;AN=2;ASN_AF=0.91;AVGPOST=0.9974;ERATE=0.0006;EUR_AF=0.63;LDAF=0.7269;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1270349 rs4247094 T C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.94;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8969;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1271890 rs1004041 G T 100 PASS AA=g;AC=1;AF=0.63;AFR_AF=0.54;AMR_AF=0.59;AN=2;ASN_AF=0.89;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6285;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +16 1272038 rs11248860 G A 100 PASS AA=a;AC=1;AF=0.87;AFR_AF=0.91;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8662;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1272865 rs4984639 G A 100 PASS AA=g;AC=1;AF=0.79;AFR_AF=0.70;AMR_AF=0.76;AN=2;ASN_AF=0.93;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7876;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-3.85,-0.00,-5.00 +16 1273638 rs909920 A G 100 PASS AA=g;AC=1;AF=0.81;AFR_AF=0.92;AMR_AF=0.72;AN=2;ASN_AF=0.98;AVGPOST=0.9906;ERATE=0.0005;EUR_AF=0.64;LDAF=0.8033;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.900:-0.18,-0.47,-2.37 +16 1306355 rs1800984 T C 100 PASS AA=-;AC=1;AF=0.71;AFR_AF=0.79;AMR_AF=0.57;AN=2;ASN_AF=0.97;AVGPOST=0.9794;ERATE=0.0016;EUR_AF=0.54;LDAF=0.7106;RSQ=0.9669;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.29 +16 1306671 rs1141966 G A 100 PASS AA=-;AC=1;AF=0.40;AFR_AF=0.32;AMR_AF=0.26;AN=2;ASN_AF=0.68;AVGPOST=0.9776;ERATE=0.0046;EUR_AF=0.30;LDAF=0.3975;RSQ=0.9663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1306681 rs1141967 G A 100 PASS AA=-;AC=1;AF=0.45;AFR_AF=0.33;AMR_AF=0.27;AN=2;ASN_AF=0.82;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.32;LDAF=0.4454;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1306918 rs74470113 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.31;AN=2;ASN_AF=0.44;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3558;RSQ=0.9851;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1306921 rs78324915 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.31;AN=2;ASN_AF=0.44;AVGPOST=0.9956;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3560;RSQ=0.9838;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1306927 rs79472859 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.31;AN=2;ASN_AF=0.44;AVGPOST=0.9951;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3558;RSQ=0.9819;SNPSOURCE=EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1306973 rs79313952 A G 100 PASS AA=a;AC=1;AF=0.35;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.44;AVGPOST=0.9901;ERATE=0.0045;EUR_AF=0.34;LDAF=0.3480;RSQ=0.9667;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1306986 rs72775467 C T 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.31;AN=2;ASN_AF=0.44;AVGPOST=0.9920;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3531;RSQ=0.9722;SNPSOURCE=EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1364140 rs9941160 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1364281 rs4984806 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1370303 rs909916 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9374;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1370309 rs909917 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1374818 rs8063 A G 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.35;AMR_AF=0.67;AN=2;ASN_AF=0.96;AVGPOST=0.9995;ERATE=0.0056;EUR_AF=0.69;LDAF=0.6819;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1388888 rs7197416 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.89;LDAF=0.9435;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1389153 rs7202563 C A 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.91;LDAF=0.9535;RSQ=0.9704;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.92,-0.01 +16 1391221 rs34468534 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.38;AMR_AF=0.29;AN=2;ASN_AF=0.82;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4614;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1391871 rs2369699 C G 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.72;AMR_AF=0.35;AN=2;ASN_AF=0.83;AVGPOST=0.9988;ERATE=0.0018;EUR_AF=0.38;LDAF=0.5687;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1392877 rs742458 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.32;AN=2;ASN_AF=0.82;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.35;LDAF=0.5077;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1393020 rs2235632 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.23;AMR_AF=0.56;AN=2;ASN_AF=0.17;AVGPOST=0.9976;ERATE=0.0020;EUR_AF=0.50;LDAF=0.3657;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 1394430 rs12597545 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.15;AMR_AF=0.50;AN=2;ASN_AF=0.17;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3019;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 1394507 rs1132356 A C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9460;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1394551 rs11248872 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9497;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1397815 rs1132358 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.57;AN=2;ASN_AF=0.17;AVGPOST=0.9861;ERATE=0.0014;EUR_AF=0.47;LDAF=0.3462;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 1412005 rs2072987 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.03;AN=2;ASN_AF=0.29;AVGPOST=0.9947;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0899;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1451519 rs761068 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9431;ERATE=0.0355;EUR_AF=0.69;LDAF=0.5899;RSQ=0.9181;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-1.94,-0.01,-3.55 +16 1464636 rs111437424 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.94;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9061;ERATE=0.0074;EUR_AF=0.87;LDAF=0.8945;RSQ=0.6291;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.950:-4.10,-0.55,-0.14 +16 1479250 rs11646599 C T 100 PASS AA=c;AC=1;AF=0.31;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.22;AVGPOST=0.9976;ERATE=0.0009;EUR_AF=0.39;LDAF=0.3102;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 1507778 rs9922189 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.67;AVGPOST=0.9928;ERATE=0.0628;EUR_AF=0.59;LDAF=0.6050;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 1510567 rs2072950 T G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.94;AMR_AF=0.66;AN=2;ASN_AF=0.31;AVGPOST=0.9984;ERATE=0.0010;EUR_AF=0.70;LDAF=0.6452;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +16 1515248 rs145502580 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0119;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1545448 rs2235624 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.20;AMR_AF=0.69;AN=2;ASN_AF=0.54;AVGPOST=0.9316;ERATE=0.0368;EUR_AF=0.61;LDAF=0.5126;RSQ=0.9098;SNPSOURCE=LOWCOV,EXOME;THETA=0.0243;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.44,-0.02 +16 1569871 rs144624901 C T 100 PASS AA=C;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0040;RSQ=0.9315;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 1570857 rs932391 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.83;AMR_AF=0.46;AN=2;ASN_AF=0.59;AVGPOST=0.9974;ERATE=0.0006;EUR_AF=0.28;LDAF=0.5157;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.05,-0.94 +16 1573485 rs34819117 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1854;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1573810 rs2745176 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9784;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1573890 rs2235638 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.0020;AMR_AF=0.16;AN=2;ASN_AF=0.18;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0903;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1605044 rs12443936 C T 100 PASS AA=c;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0572;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1605051 rs9932984 A G 100 PASS AA=g;AC=1;AF=0.47;AFR_AF=0.69;AMR_AF=0.41;AN=2;ASN_AF=0.54;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4717;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1605053 rs12443939 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0787;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1608177 rs2235641 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.55;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3944;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1614097 rs8048410 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.71;AMR_AF=0.38;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4639;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1616201 rs11648609 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0772;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1639793 rs12447357 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.35;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2034;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1642423 rs2273679 C T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.34;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2025;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1652614 rs2236269 T A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.72;AMR_AF=0.39;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4699;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1652621 rs59000332 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0782;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1657284 rs1894649 C G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.73;AMR_AF=0.39;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4837;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1682281 rs3169425 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.68;AMR_AF=0.33;AN=2;ASN_AF=0.55;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.16;LDAF=0.4067;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1691106 rs2072986 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.69;AMR_AF=0.30;AN=2;ASN_AF=0.59;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.14;LDAF=0.4055;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1703011 rs12445657 T C 100 PASS AA=t;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0543;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1706435 rs61739874 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=0.9927;ERATE=0.0004;EUR_AF=0.20;LDAF=0.0993;RSQ=0.9702;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.20,-0.44 +16 1707015 rs79245610 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0552;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1720844 rs2272893 A G 100 PASS AA=a;AC=1;AF=0.37;AFR_AF=0.61;AMR_AF=0.30;AN=2;ASN_AF=0.52;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.15;LDAF=0.3733;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 1815946 rs2575371 C T 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.06;AMR_AF=0.50;AN=2;ASN_AF=0.25;AVGPOST=0.9927;ERATE=0.0006;EUR_AF=0.55;LDAF=0.3540;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +16 1817754 rs2076427 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.63;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7629;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1817768 rs2076428 T G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.62;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7610;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +16 1817935 rs2076429 A C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.63;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.79;LDAF=0.7643;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1818152 rs2076430 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.75;AMR_AF=0.80;AN=2;ASN_AF=0.59;AVGPOST=0.9633;ERATE=0.0045;EUR_AF=0.68;LDAF=0.6923;RSQ=0.9416;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1818153 rs2437734 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.80;AMR_AF=0.90;AN=2;ASN_AF=0.90;AVGPOST=0.9561;ERATE=0.0101;EUR_AF=0.83;LDAF=0.8449;RSQ=0.8824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1818503 rs2076431 G C 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.78;AMR_AF=0.85;AN=2;ASN_AF=0.62;AVGPOST=0.9955;ERATE=0.0008;EUR_AF=0.79;LDAF=0.7524;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +16 1818680 rs2072989 G C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.59;AVGPOST=0.9846;ERATE=0.0075;EUR_AF=0.79;LDAF=0.7467;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 1820992 rs11890 T A 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.80;AMR_AF=0.86;AN=2;ASN_AF=0.61;AVGPOST=0.9947;ERATE=0.0006;EUR_AF=0.79;LDAF=0.7569;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +16 1823444 rs761065 C G 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.11;AMR_AF=0.52;AN=2;ASN_AF=0.28;AVGPOST=0.9766;ERATE=0.0010;EUR_AF=0.57;LDAF=0.3827;RSQ=0.9652;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.79,-0.08 +16 1825768 rs2745169 A C 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.11;AMR_AF=0.59;AN=2;ASN_AF=0.27;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.57;LDAF=0.3927;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1827836 rs1178432 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.75;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.85;LDAF=0.8632;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +16 1836709 rs2575351 G C 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.93;AMR_AF=0.84;AN=2;ASN_AF=0.71;AVGPOST=0.9980;ERATE=0.0025;EUR_AF=0.79;LDAF=0.8093;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +16 1836796 rs2235648 C A 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.51;AMR_AF=0.62;AN=2;ASN_AF=0.40;AVGPOST=0.9986;ERATE=0.0019;EUR_AF=0.58;LDAF=0.5224;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1837900 rs344358 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9973;RSQ=0.8517;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1838640 rs344359 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.95;AMR_AF=0.84;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8148;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +16 1842209 rs3751893 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.82;AN=2;ASN_AF=0.72;AVGPOST=0.9970;ERATE=0.0009;EUR_AF=0.80;LDAF=0.7838;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.57,-0.00 +16 1843672 rs3817902 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.71;AMR_AF=0.69;AN=2;ASN_AF=0.55;AVGPOST=0.9930;ERATE=0.0026;EUR_AF=0.67;LDAF=0.6482;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +16 1859432 rs1628812 G C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.79;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7430;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 1859730 rs2745199 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.71;AMR_AF=0.79;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7367;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1859850 rs1742442 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.79;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7431;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1873087 rs104843 C A 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.53;AMR_AF=0.68;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.61;LDAF=0.5842;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 1961674 rs337285 G C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.66;AMR_AF=0.51;AN=2;ASN_AF=0.54;AVGPOST=0.9680;ERATE=0.0005;EUR_AF=0.54;LDAF=0.5678;RSQ=0.9527;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2011126 rs758335 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8602;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2014283 rs2286466 A G 100 PASS AA=N;AC=2;AF=0.85;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8528;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2014424 rs403609 C G 100 PASS AA=c;AC=1;AF=0.43;AFR_AF=0.11;AMR_AF=0.47;AN=2;ASN_AF=0.51;AVGPOST=0.9892;ERATE=0.0043;EUR_AF=0.55;LDAF=0.4264;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2014528 rs17135712 G A 100 PASS AA=g;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.10;LDAF=0.0645;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.34,-0.27 +16 2014591 rs1141684 C T 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0856;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.90,-0.06 +16 2024069 rs200942398 G C 100 PASS AA=g;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +16 2024131 rs3743851 T C 100 PASS AA=N;AC=1;AF=0.45;AFR_AF=0.81;AMR_AF=0.33;AN=2;ASN_AF=0.42;AVGPOST=0.9948;ERATE=0.0190;EUR_AF=0.29;LDAF=0.4484;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2024355 rs3743850 G T 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.18;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=0.9970;ERATE=0.0063;EUR_AF=0.10;LDAF=0.1037;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2025206 rs8053843 A C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=0.9983;ERATE=0.0055;EUR_AF=0.22;LDAF=0.1883;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2025604 rs8052713 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.04;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0771;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2025678 rs17602 C A 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0691;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2028402 rs8460 A C 100 PASS AA=N;AC=1;AF=0.40;AFR_AF=0.66;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=0.9945;ERATE=0.0023;EUR_AF=0.29;LDAF=0.3944;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2030127 rs61729118 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0700;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.89 +16 2036048 rs1046495 T C 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2087785 rs34165865 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.19;AN=2;AVGPOST=0.9931;ERATE=0.0005;EUR_AF=0.23;LDAF=0.1465;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2105400 rs1800720 C T 100 PASS AA=.;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.09;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0922;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2106725 rs45473698 C G 100 PASS AA=.;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2115481 rs45477195 C T 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0497;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2133646 rs202012527 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9987;ERATE=0.0006;LDAF=0.0011;RSQ=0.4697;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.06 +16 2138218 rs1800718 A C 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.58;AMR_AF=0.24;AN=2;AVGPOST=0.9975;ERATE=0.0049;EUR_AF=0.23;LDAF=0.2526;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2138398 rs13332221 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.42;AMR_AF=0.16;AN=2;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1629;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2138422 rs13332222 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.53;AMR_AF=0.18;AN=2;AVGPOST=0.9986;ERATE=0.0009;EUR_AF=0.12;LDAF=0.1904;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2140010 rs7203729 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.69;AMR_AF=0.23;AN=2;AVGPOST=0.9975;ERATE=0.0016;EUR_AF=0.20;LDAF=0.2638;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +16 2140454 rs3087632 T C 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.69;AMR_AF=0.23;AN=2;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2617;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2140680 rs10960 T C 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.60;AMR_AF=0.22;AN=2;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2380;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2154478 rs4786209 A G 100 PASS AA=-;AC=2;AF=0.56;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.7559;ERATE=0.0544;EUR_AF=0.52;LDAF=0.5462;RSQ=0.6064;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:1.100:-0.48,-0.48,-0.48 +16 2203456 rs26931 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9947;RSQ=0.9551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2239402 rs27381 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.49;AVGPOST=0.9849;ERATE=0.0015;EUR_AF=0.43;LDAF=0.3595;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 2256326 rs27699 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.59;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3970;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2256461 rs26863 C G 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.59;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.47;LDAF=0.3971;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2257105 rs26862 C G 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.05;AMR_AF=0.44;AN=2;ASN_AF=0.59;AVGPOST=0.9957;ERATE=0.0012;EUR_AF=0.51;LDAF=0.4140;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2260567 rs26857 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.51;AMR_AF=0.46;AN=2;ASN_AF=0.61;AVGPOST=0.9849;ERATE=0.0109;EUR_AF=0.47;LDAF=0.5137;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.56,-0.14 +16 2260612 rs26856 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.64;AVGPOST=0.9907;ERATE=0.0021;EUR_AF=0.72;LDAF=0.6695;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +16 2282256 rs26839 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9939;RSQ=0.9554;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2285357 rs26840 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.9917;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3157;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2305539 rs155243 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.34;AMR_AF=0.52;AN=2;ASN_AF=0.43;AVGPOST=0.9993;ERATE=0.0011;EUR_AF=0.41;LDAF=0.4198;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2328248 rs117271787 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0008;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2331430 rs149532 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.92;LDAF=0.8953;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2337993 rs313909 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.50;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4324;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2338363 rs313908 C G 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.54;AMR_AF=0.74;AN=2;ASN_AF=0.97;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.75;LDAF=0.7598;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +16 2349371 rs170447 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.25;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9963;ERATE=0.0014;EUR_AF=0.53;LDAF=0.4646;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2367336 rs13332514 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1914;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2367424 rs13332547 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1979;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2375961 rs46725 C T 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.43;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8625;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2485896 rs12928789 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7797;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2498828 rs28417759 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7783;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2498849 rs28670436 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.82;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7464;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2499011 rs8060813 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7788;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2510603 rs4786284 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.67;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9622;ERATE=0.0038;EUR_AF=0.63;LDAF=0.6779;RSQ=0.9285;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +16 2510710 rs117764265 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0176;RSQ=0.9423;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2550406 rs12373107 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0154;RSQ=0.8892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2581081 rs71386675 C G 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.06;AN=2;AVGPOST=0.9954;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0296;RSQ=0.9374;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2747857 rs3094475 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3231;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2812482 rs79910471 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2812890 rs2240141 A G 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.64;AMR_AF=0.85;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6755;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2812939 rs2240140 C A 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.02;AMR_AF=0.65;AN=2;ASN_AF=0.34;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.64;LDAF=0.4232;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2814162 rs3094775 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.63;AMR_AF=0.83;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6495;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2815237 rs3094773 A C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9072;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2818161 rs2301802 T C 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.65;AMR_AF=0.85;AN=2;ASN_AF=0.39;AVGPOST=0.9985;ERATE=0.0022;EUR_AF=0.82;LDAF=0.6737;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2821573 rs8017 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.25;AMR_AF=0.55;AN=2;ASN_AF=0.34;AVGPOST=0.9951;ERATE=0.0617;EUR_AF=0.50;LDAF=0.4123;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2825594 rs3094774 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.82;LDAF=0.7059;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +16 2834826 rs12931183 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.66;AMR_AF=0.60;AN=2;ASN_AF=0.31;AVGPOST=0.9952;ERATE=0.0030;EUR_AF=0.75;LDAF=0.5903;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +16 2835189 rs12599918 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.79;AMR_AF=0.60;AN=2;ASN_AF=0.32;AVGPOST=0.9925;ERATE=0.0009;EUR_AF=0.75;LDAF=0.6169;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +16 2867450 rs71386691 G C 100 PASS AA=g;AC=2;AF=0.46;AFR_AF=0.58;AMR_AF=0.51;AN=2;ASN_AF=0.28;AVGPOST=0.9135;ERATE=0.0089;EUR_AF=0.48;LDAF=0.4570;RSQ=0.8688;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.52,-0.01 +16 2871121 rs11076844 T C 100 PASS AA=c;AC=2;AF=0.72;AFR_AF=0.80;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9989;ERATE=0.0034;EUR_AF=0.68;LDAF=0.7233;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2871555 rs10641 G A 100 PASS AA=g;AC=2;AF=0.66;AFR_AF=0.68;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9993;ERATE=0.0015;EUR_AF=0.68;LDAF=0.6644;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2882197 rs12373 G T 100 PASS AA=g;AC=2;AF=0.61;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.68;LDAF=0.6087;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 2903047 rs1054912 G C 100 PASS AA=c;AC=2;AF=0.78;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.63;AVGPOST=0.9842;ERATE=0.0015;EUR_AF=0.84;LDAF=0.7778;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.66,-0.01 +16 2903068 rs113609771 A C 100 PASS AA=a;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.0017;AVGPOST=0.9941;ERATE=0.0005;EUR_AF=0.28;LDAF=0.1286;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2903081 rs3743944 G A 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.55;AMR_AF=0.43;AN=2;ASN_AF=0.49;AVGPOST=0.9894;ERATE=0.0009;EUR_AF=0.59;LDAF=0.5307;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +16 2903845 rs2074294 G T 100 PASS AA=g;AC=1;AF=0.39;AFR_AF=0.48;AMR_AF=0.27;AN=2;ASN_AF=0.49;AVGPOST=0.9943;ERATE=0.0007;EUR_AF=0.32;LDAF=0.3916;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 2903850 rs112285893 G C 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.0017;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1260;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 2979640 rs11644380 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.34;AMR_AF=0.40;AN=2;ASN_AF=0.09;AVGPOST=0.9966;ERATE=0.0006;EUR_AF=0.39;LDAF=0.3023;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.10,-0.67 +16 2987279 rs61747750 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=0.9897;ERATE=0.0007;EUR_AF=0.03;LDAF=0.0161;RSQ=0.7646;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.19 +16 2988469 rs12929501 C G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.30;AN=2;ASN_AF=0.10;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2293;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3016805 rs111506442 T A 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=0.9939;ERATE=0.0005;EUR_AF=0.09;LDAF=0.0395;RSQ=0.9382;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.41 +16 3016885 rs58462745 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9879;ERATE=0.0014;EUR_AF=0.98;LDAF=0.9897;RSQ=0.5446;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +16 3017272 rs2285827 G T 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.22;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9441;ERATE=0.0032;EUR_AF=0.40;LDAF=0.2955;RSQ=0.8957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.58,-0.51,-0.16 +16 3021116 rs4786365 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.76;AMR_AF=0.67;AN=2;ASN_AF=0.61;AVGPOST=0.9991;ERATE=0.0009;EUR_AF=0.73;LDAF=0.6975;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3021417 rs79505645 G T 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0306;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 3024188 rs2074528 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.78;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=0.9869;ERATE=0.0015;EUR_AF=0.74;LDAF=0.7040;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.73,-0.09 +16 3065596 rs2257295 T C 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.36;AMR_AF=0.34;AN=2;ASN_AF=0.22;AVGPOST=0.9943;ERATE=0.0008;EUR_AF=0.36;LDAF=0.3179;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.96,-0.05 +16 3075701 rs2717664 C T 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.27;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2565;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3075999 rs2245000 C G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.79;AMR_AF=0.58;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.56;LDAF=0.5490;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3079685 rs2244494 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.27;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=0.9853;ERATE=0.0018;EUR_AF=0.31;LDAF=0.2597;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.41,-0.02 +16 3085335 rs7204908 G C 100 PASS AA=g;AC=2;AF=0.29;AFR_AF=0.30;AMR_AF=0.36;AN=2;ASN_AF=0.21;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.33;LDAF=0.2955;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.09,-0.00 +16 3085375 rs11077096 G A 100 PASS AA=g;AC=2;AF=0.31;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.21;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.33;LDAF=0.3074;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.68,-0.00 +16 3097596 rs3743936 T A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.80;AMR_AF=0.58;AN=2;ASN_AF=0.33;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5550;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +16 3100095 rs10431961 C T 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.18;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9971;ERATE=0.0010;EUR_AF=0.31;LDAF=0.2637;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3106994 rs1064948 A T 100 PASS AA=t;AC=2;AF=0.79;AFR_AF=0.93;AMR_AF=0.71;AN=2;ASN_AF=0.91;AVGPOST=0.9958;ERATE=0.0004;EUR_AF=0.66;LDAF=0.7940;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3108404 rs7359440 A G 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.34;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9849;ERATE=0.0024;EUR_AF=0.09;LDAF=0.1334;RSQ=0.9546;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-2.78,-0.26,-0.35 +16 3108713 rs79530442 G C 100 PASS AA=g;AC=1;AF=0.11;AFR_AF=0.28;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.10;LDAF=0.1147;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.05,-0.95 +16 3109032 rs7188234 G A 100 PASS AA=g;AC=1;AF=0.09;AFR_AF=0.20;AMR_AF=0.09;AN=2;AVGPOST=0.9948;ERATE=0.0006;EUR_AF=0.08;LDAF=0.0892;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.42,-0.21 +16 3117354 rs1555001 T A 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.44;AVGPOST=0.9934;ERATE=0.0107;EUR_AF=0.31;LDAF=0.3296;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0135;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 3117937 rs2239303 G A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.58;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9960;ERATE=0.0064;EUR_AF=0.61;LDAF=0.5719;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 3165425 rs909410 A G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.47;AMR_AF=0.37;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0018;EUR_AF=0.39;LDAF=0.3497;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3191356 rs2735537 G A 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.33;AMR_AF=0.34;AN=2;ASN_AF=0.16;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3062;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +16 3254470 rs1834026 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.30;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.44;LDAF=0.4451;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3254972 rs2075851 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.13;AMR_AF=0.48;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4050;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3283644 rs147207388 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3297073 rs224206 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.74;AMR_AF=0.63;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0015;EUR_AF=0.56;LDAF=0.6338;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3297175 rs224207 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.69;AMR_AF=0.62;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6207;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3297181 rs224208 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.56;LDAF=0.6097;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3298865 rs224212 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6298;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3299749 rs224213 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.77;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.56;LDAF=0.6607;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +16 3304463 rs224222 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.03;AVGPOST=0.9959;ERATE=0.0007;EUR_AF=0.28;LDAF=0.1687;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3304573 rs224223 G T 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.54;AMR_AF=0.57;AN=2;ASN_AF=0.19;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4275;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.45,-2.36 +16 3304654 rs224224 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.54;AMR_AF=0.57;AN=2;ASN_AF=0.18;AVGPOST=0.9953;ERATE=0.0013;EUR_AF=0.47;LDAF=0.4262;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3304762 rs224225 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.57;AN=2;ASN_AF=0.18;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4245;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3339435 rs220379 G C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.50;AMR_AF=0.36;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.25;LDAF=0.2692;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3350639 rs7185015 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1591;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3367061 rs17611827 G A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1695;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3367229 rs17611866 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1567;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3405986 rs1218762 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.37;AMR_AF=0.25;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2578;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3405994 rs1228348 A G 100 PASS AA=t;AC=2;AF=0.87;AFR_AF=0.81;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8688;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3406387 rs1218763 C G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3406516 rs11643487 A G 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3163;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3406626 rs11648783 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.37;AMR_AF=0.25;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2577;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3434966 rs27231 T C 100 PASS AA=t;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2354;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3452193 rs37811 T G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.96;AMR_AF=0.89;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9068;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3487556 rs40534 A T 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.28;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2134;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3487576 rs37825 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.28;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2138;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3490922 rs2270494 G C 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.13;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4899;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 3533577 rs1137454 C G 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.75;AVGPOST=0.9972;ERATE=0.0011;EUR_AF=0.66;LDAF=0.7089;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 3534892 rs13740 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.34;AMR_AF=0.69;AN=2;ASN_AF=0.62;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6036;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.99,-0.00,-3.66 +16 3639139 rs3810812 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.94;AMR_AF=0.66;AN=2;ASN_AF=0.73;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.53;LDAF=0.6930;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3639827 rs3810813 G A 100 PASS AA=G;AC=1;AF=0.07;AMR_AF=0.07;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0748;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3656482 rs8061528 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.27;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9996;ERATE=0.0012;EUR_AF=0.22;LDAF=0.2507;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 3705819 rs181314680 C G 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9530;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 3706668 rs34923865 A C 100 PASS AA=A;AC=1;AF=0.0046;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 3707747 rs1053874 G A 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.84;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4854;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 3721773 rs1136948 G C 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9993;ERATE=0.0024;EUR_AF=0.19;LDAF=0.1116;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 3726160 rs8050400 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0010;EUR_AF=0.89;LDAF=0.9478;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4015729 rs879620 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.13;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.62;LDAF=0.3957;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4016676 rs2230742 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.61;AMR_AF=0.82;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7921;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4027605 rs2240735 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.14;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.76;LDAF=0.5477;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +16 4039141 rs2072341 A G 100 PASS AA=N;AC=2;AF=0.87;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8697;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4057603 rs3730119 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.30;AMR_AF=0.28;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1981;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 4165432 rs2530898 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9998;RSQ=0.0926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +16 4253117 rs13339613 C T 100 PASS AA=C;AC=2;AF=0.12;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=0.9953;ERATE=0.0013;EUR_AF=0.14;LDAF=0.1194;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4254523 rs60137128 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.30;AN=2;ASN_AF=0.19;AVGPOST=0.9760;ERATE=0.0055;EUR_AF=0.40;LDAF=0.2917;RSQ=0.9585;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4386814 rs669561 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9913;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4414727 rs2277852 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.42;AMR_AF=0.52;AN=2;ASN_AF=0.50;AVGPOST=0.9954;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4990;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.35,-0.00 +16 4414987 rs2277851 G A 100 PASS AA=g;AC=2;AF=0.46;AFR_AF=0.26;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9960;ERATE=0.0020;EUR_AF=0.53;LDAF=0.4579;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.55,-0.00 +16 4415455 rs3747576 C G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.70;AMR_AF=0.54;AN=2;ASN_AF=0.50;AVGPOST=0.9966;ERATE=0.0006;EUR_AF=0.54;LDAF=0.5659;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.33,-0.00 +16 4431202 rs758044 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.59;AMR_AF=0.78;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7527;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +16 4432029 rs3810818 A C 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.59;AMR_AF=0.77;AN=2;ASN_AF=0.83;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7452;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.23,-0.00 +16 4445327 rs3747579 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.12;AMR_AF=0.60;AN=2;ASN_AF=0.82;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5937;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4475868 rs2304631 A T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.75;AVGPOST=0.9970;ERATE=0.0007;EUR_AF=0.74;LDAF=0.7226;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.950:-4.70,-0.09,-0.74 +16 4476089 rs1139652 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.56;AMR_AF=0.75;AN=2;ASN_AF=0.75;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7018;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.70,-0.00 +16 4484396 rs4785963 A T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.64;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6919;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4496973 rs2304633 T A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.64;AMR_AF=0.65;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6864;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4500544 rs2304634 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.29;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=0.9809;ERATE=0.0076;EUR_AF=0.66;LDAF=0.5596;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +16 4524060 rs3761680 C A 100 PASS AA=c;AC=2;AF=0.55;AFR_AF=0.17;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.68;LDAF=0.5503;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.19,-0.00 +16 4562725 rs2270367 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.32;AVGPOST=0.9855;ERATE=0.0007;EUR_AF=0.04;LDAF=0.1299;RSQ=0.9554;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.600:-0.12,-0.61,-5.00 +16 4664833 rs860889 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9932;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9927;RSQ=0.6420;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.73,-0.09 +16 4674954 rs3747587 C G 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.22;AMR_AF=0.81;AN=2;ASN_AF=0.89;AVGPOST=0.9959;ERATE=0.0006;EUR_AF=0.82;LDAF=0.7001;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.71,-0.10 +16 4721468 rs715109 T C 100 PASS AA=c;AC=1;AF=0.58;AFR_AF=0.50;AMR_AF=0.53;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5822;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4723451 rs2289314 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.49;AMR_AF=0.47;AN=2;ASN_AF=0.68;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.51;LDAF=0.5415;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4747136 rs841215 G C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.21;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=0.9973;ERATE=0.0035;EUR_AF=0.54;LDAF=0.4947;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4748825 rs841214 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.18;AMR_AF=0.45;AN=2;ASN_AF=0.66;AVGPOST=0.9888;ERATE=0.0098;EUR_AF=0.46;LDAF=0.4456;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4751045 rs863980 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.50;AMR_AF=0.52;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.54;LDAF=0.5621;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4752134 rs841210 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.53;AMR_AF=0.53;AN=2;ASN_AF=0.69;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5829;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.600:-5.00,-3.13,-0.00 +16 4787935 rs17137215 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0787;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4787987 rs859310 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5773;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4790273 rs859305 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.50;AMR_AF=0.54;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5983;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4794873 rs2075469 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.47;AMR_AF=0.55;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6047;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4796393 rs737700 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.51;AMR_AF=0.56;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6202;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4797457 rs17853375 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.07;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4891;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4802370 rs3747601 C A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.40;AMR_AF=0.54;AN=2;ASN_AF=0.70;AVGPOST=0.9974;ERATE=0.0015;EUR_AF=0.62;LDAF=0.5809;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.54 +16 4802386 rs3747602 G T 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.39;AMR_AF=0.54;AN=2;ASN_AF=0.70;AVGPOST=0.9977;ERATE=0.0008;EUR_AF=0.61;LDAF=0.5741;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.78,-0.08 +16 4815602 rs12919587 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.33;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=0.9732;ERATE=0.0636;EUR_AF=0.50;LDAF=0.4324;RSQ=0.9610;SNPSOURCE=LOWCOV,EXOME;THETA=0.0156;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 4815608 rs4786549 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9957;ERATE=0.0023;EUR_AF=1.00;LDAF=0.9417;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4833421 rs7201715 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0016;EUR_AF=0.30;LDAF=0.2683;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4833970 rs759991 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2984;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4837545 rs9673735 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2896;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4847524 rs1982515 T C 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.20;AMR_AF=0.59;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3995;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4855279 rs8064024 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.78;AMR_AF=0.65;AN=2;ASN_AF=0.33;AVGPOST=0.9990;ERATE=0.0012;EUR_AF=0.51;LDAF=0.5455;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4861709 rs2085329 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4867565 rs6500635 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.77;AMR_AF=0.65;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0023;EUR_AF=0.50;LDAF=0.5388;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4872970 rs2075466 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.35;AMR_AF=0.38;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3181;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4920661 rs6500637 T C 100 PASS AA=t;AC=1;AF=0.41;AFR_AF=0.54;AMR_AF=0.45;AN=2;ASN_AF=0.32;AVGPOST=0.9989;ERATE=0.0015;EUR_AF=0.38;LDAF=0.4106;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4923091 rs2251666 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.45;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0019;EUR_AF=0.35;LDAF=0.3434;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4930100 rs1876359 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.30;AMR_AF=0.47;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.37;LDAF=0.3592;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4933939 rs2037912 G C 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.04;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4451;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 4934549 rs1049208 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.07;AMR_AF=0.46;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0033;EUR_AF=0.54;LDAF=0.4467;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 4934564 rs1049207 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.10;AMR_AF=0.46;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4566;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 4935146 rs1049206 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9992;ERATE=0.0029;EUR_AF=0.32;LDAF=0.3388;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4935517 rs200407505 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4935636 rs2075639 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.23;AVGPOST=0.9973;ERATE=0.0106;EUR_AF=0.08;LDAF=0.1184;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4938160 rs2734742 T G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9447;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4940809 rs2471844 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9337;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.00,-0.05 +16 4942099 rs1049205 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.05;AMR_AF=0.45;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.54;LDAF=0.4444;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 4944518 rs1876363 C G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.56;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8926;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 4945221 rs12709119 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.36;AMR_AF=0.74;AN=2;ASN_AF=0.73;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6933;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 4945225 rs2660246 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2410;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 4947638 rs201173658 C G 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0019;RSQ=0.9882;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 5061085 rs2908669 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9980;ERATE=0.0010;EUR_AF=0.88;LDAF=0.9320;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.06,-0.00 +16 5064917 rs2012649 C T 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.05;AMR_AF=0.37;AN=2;ASN_AF=0.05;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.27;LDAF=0.1777;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 5075542 rs887854 G A 100 PASS AA=g;AC=1;AF=0.77;AFR_AF=0.90;AMR_AF=0.72;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.66;LDAF=0.7691;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 5075633 rs7188856 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.16;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.34;LDAF=0.2283;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 5078841 rs1995278 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 5080523 rs2102065 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.05;AMR_AF=0.26;AN=2;ASN_AF=0.16;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.31;LDAF=0.2076;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.56 +16 5083483 rs2972272 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.66;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9700;ERATE=0.0034;EUR_AF=0.68;LDAF=0.7251;RSQ=0.9394;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.38 +16 5125365 rs4786590 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9502;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 5128817 rs17849848 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.14;AVGPOST=0.9929;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0960;RSQ=0.9702;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.08 +16 5128902 rs2110338 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.30;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.41;LDAF=0.3355;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.68,-0.10 +16 5132636 rs1047732 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.60;AVGPOST=0.9793;ERATE=0.0057;EUR_AF=0.48;LDAF=0.4718;RSQ=0.9711;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.46,-0.01,-1.52 +16 5140561 rs9673770 C T 100 PASS AA=c;AC=1;AF=0.12;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.14;AVGPOST=0.9933;ERATE=0.0005;EUR_AF=0.15;LDAF=0.1208;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +16 5145474 rs7192650 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1331;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.44 +16 7657373 rs1507010 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.08;AMR_AF=0.49;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3341;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 7726757 rs2302213 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0987;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 7759164 rs7196923 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 8728953 rs1731044 C T 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8729011 rs116928307 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0111;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 8729124 rs2302607 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.33;AVGPOST=0.9856;ERATE=0.0007;EUR_AF=0.24;LDAF=0.2058;RSQ=0.9674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 8736028 rs1614616 T C 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8738398 rs1641065 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8738427 rs1641066 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8738499 rs1731000 G A 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9912;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8738579 rs1641067 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9910;RSQ=0.9638;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8738622 rs9933132 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9912;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +16 8739954 rs1641070 G A 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9908;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8740015 rs1730994 A C 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8829715 rs1640998 T C 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.42;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=0.9901;ERATE=0.0466;EUR_AF=0.35;LDAF=0.3102;RSQ=0.9827;SNPSOURCE=LOWCOV,EXOME;THETA=0.0171;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-1.20,-0.03 +16 8839954 rs1731017 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.30;AMR_AF=0.61;AN=2;ASN_AF=0.62;AVGPOST=0.9965;ERATE=0.0090;EUR_AF=0.63;LDAF=0.5490;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8841960 rs1641010 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.17;AMR_AF=0.59;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8858580 rs2302608 T A 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.71;AMR_AF=0.93;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8643;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8868776 rs1641022 C A 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.08;AMR_AF=0.36;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3372;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8905054 rs11074924 T C 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.25;AMR_AF=0.43;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4328;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +16 8948974 rs6898 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9154;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +16 8952248 rs988065 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9803;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8953081 rs8097 C G 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.37;AMR_AF=0.56;AN=2;ASN_AF=0.68;AVGPOST=0.9940;ERATE=0.0036;EUR_AF=0.68;LDAF=0.5870;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.78,-0.01 +16 8992342 rs2304465 G A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.37;AMR_AF=0.47;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3858;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 8996377 rs2447918 C T 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.34;AMR_AF=0.46;AN=2;ASN_AF=0.26;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3537;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 9004564 rs2447916 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 9014350 rs1677470 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 9186735 rs4630540 C G 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.76;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5138;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 9916204 rs9806806 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.25;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2633;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 9943666 rs8049651 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2171;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10524957 rs34430103 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1604;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10525230 rs34404959 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.43;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2089;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10631912 rs2279868 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.15;LDAF=0.2254;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 10631945 rs1504883 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.25;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.52;LDAF=0.4514;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10769958 rs2719710 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.67;AMR_AF=0.53;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5837;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 10770075 rs2719711 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.79;AMR_AF=0.54;AN=2;ASN_AF=0.82;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.38;LDAF=0.6112;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +16 10775855 rs12918646 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2953;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10788129 rs2251985 G T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.64;AMR_AF=0.57;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5822;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10788406 rs9922129 G T 100 PASS AA=.;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.37;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3255;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10855341 rs2233539 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.37;AN=2;ASN_AF=0.47;AVGPOST=0.9991;ERATE=0.0033;EUR_AF=0.28;LDAF=0.3107;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10989219 rs2229317 C G 100 PASS AA=c;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.27;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1504;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10995850 rs6498124 G T 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.26;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9980;ERATE=0.0012;EUR_AF=0.57;LDAF=0.4428;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 10995933 rs8046121 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9896;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 10996682 rs35170497 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.41;AN=2;ASN_AF=0.14;AVGPOST=0.9994;ERATE=0.0016;EUR_AF=0.27;LDAF=0.2494;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 11000848 rs4774 G C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.28;AMR_AF=0.38;AN=2;ASN_AF=0.14;AVGPOST=0.9984;ERATE=0.0017;EUR_AF=0.29;LDAF=0.2631;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 11001743 rs2229320 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.31;AVGPOST=0.9933;ERATE=0.0008;EUR_AF=0.22;LDAF=0.1940;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11001770 rs34654419 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.21;AMR_AF=0.34;AN=2;ASN_AF=0.14;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2094;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 11002904 rs2228238 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0028;EUR_AF=0.71;LDAF=0.6768;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11002927 rs7197779 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.77;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9465;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 11017058 rs4781024 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.18;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.40;LDAF=0.3175;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0160;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11114006 rs2286975 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.24;AN=2;ASN_AF=0.21;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2240;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 11154770 rs2286973 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.76;AMR_AF=0.39;AN=2;ASN_AF=0.30;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4560;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 11361895 rs8043625 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.54;LDAF=0.3839;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11362729 rs11640138 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.25;AMR_AF=0.40;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.54;LDAF=0.3775;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11369930 rs1646022 C G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.31;AVGPOST=0.9953;ERATE=0.0006;EUR_AF=0.42;LDAF=0.3134;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11374866 rs737008 G T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5105;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11439303 rs12149160 G T 100 PASS AA=g;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.27;AVGPOST=0.9900;ERATE=0.0011;EUR_AF=0.53;LDAF=0.3936;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +16 11439639 rs918737 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.66;AMR_AF=0.54;AN=2;ASN_AF=0.27;AVGPOST=0.9898;ERATE=0.0012;EUR_AF=0.66;LDAF=0.5384;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.67,-4.70 +16 11444469 rs2032931 C T 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.83;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8688;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 11650325 rs3743582 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.38;AMR_AF=0.62;AN=2;ASN_AF=0.65;AVGPOST=0.9988;ERATE=0.0011;EUR_AF=0.48;LDAF=0.5248;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.23,-0.00 +16 11769948 rs1050068 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.27;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.2846;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11769963 rs1050069 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.2912;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11773662 rs3190321 C G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.41;AMR_AF=0.34;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4622;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11773743 rs7188511 G T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.41;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.56;LDAF=0.4601;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11836508 rs3743588 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.42;AVGPOST=0.9905;ERATE=0.0010;EUR_AF=0.26;LDAF=0.2803;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-2.36,-0.01,-1.62 +16 11852354 rs8743 A C 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5283;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 11859034 rs75779711 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0856;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11859341 rs7199993 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.87;AMR_AF=0.67;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.7098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 11933678 rs2075160 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1284;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 11940390 rs8052900 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.97;AMR_AF=0.77;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6819;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 11945231 rs2075158 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.78;AMR_AF=0.75;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6358;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 11969724 rs33657 G C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.71;AMR_AF=0.52;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6161;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 12009304 rs11544193 C A 100 PASS AA=c;AC=1;AF=0.34;AFR_AF=0.11;AMR_AF=0.47;AN=2;ASN_AF=0.15;AVGPOST=0.9936;ERATE=0.0007;EUR_AF=0.56;LDAF=0.3379;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.17 +16 12060163 rs373496 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9622;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 12136954 rs1703492 A C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.87;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.67;LDAF=0.6530;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.18,-0.47 +16 12162969 rs1641843 A G 100 PASS AA=g;AC=1;AF=0.56;AFR_AF=0.80;AMR_AF=0.49;AN=2;ASN_AF=0.57;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.44;LDAF=0.5606;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 12371915 rs12448443 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.72;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5657;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 12450163 rs4781211 C G 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3329;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 12758966 rs1713480 T C 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.69;AMR_AF=0.77;AN=2;ASN_AF=0.58;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.95;LDAF=0.7661;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 12798778 rs149102231 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=0.9974;ERATE=0.0026;EUR_AF=0.01;LDAF=0.0130;RSQ=0.9204;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 14014278 rs1799798 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.15;AVGPOST=0.9942;ERATE=0.0005;EUR_AF=0.09;LDAF=0.0987;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-3.85 +16 14026007 rs254942 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9308;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 14031628 rs189463122 A T 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 14342961 rs74514365 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.21;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0585;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 14345901 rs30144 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.86;AMR_AF=0.18;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.14;LDAF=0.3555;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 14742400 rs11546303 T G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.40;LDAF=0.2705;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 14989420 rs77101519 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=0.9657;ERATE=0.0061;EUR_AF=0.44;LDAF=0.4067;RSQ=0.9189;SNPSOURCE=EXOME;THETA=0.0063;VT=SNP GT:DS:GL 0|1:0.900:-0.79,-0.08,-5.00 +16 15091601 rs28545123 G C 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.37;AN=2;ASN_AF=0.44;AVGPOST=0.9813;ERATE=0.0005;EUR_AF=0.24;LDAF=0.2929;RSQ=0.9623;SNPSOURCE=LOWCOV,EXOME;THETA=0.0091;VT=SNP GT:DS:GL 1|0:1.000:-2.96,-0.00,-5.00 +16 15095675 rs9921162 C A 100 PASS AA=g;AC=1;AF=0.27;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.42;AVGPOST=0.9825;ERATE=0.0098;EUR_AF=0.17;LDAF=0.2692;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.85 +16 15098047 rs11549900 C G 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.44;AVGPOST=0.9835;ERATE=0.0009;EUR_AF=0.26;LDAF=0.3000;RSQ=0.9678;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 15100202 rs71271216 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9587;ERATE=0.0436;EUR_AF=0.55;LDAF=0.5497;RSQ=0.8774;SNPSOURCE=EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 15110077 rs4262938 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.33;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=0.9527;ERATE=0.0416;EUR_AF=0.46;LDAF=0.3697;RSQ=0.8578;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.23 +16 15111218 rs4985162 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.43;AVGPOST=0.9849;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2660;RSQ=0.9677;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.88 +16 15116521 rs4985160 C T 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.37;AMR_AF=0.61;AN=2;ASN_AF=0.52;AVGPOST=0.9897;ERATE=0.0031;EUR_AF=0.53;LDAF=0.5033;RSQ=0.9778;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +16 15116625 rs1058637 G T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.39;AMR_AF=0.61;AN=2;ASN_AF=0.52;AVGPOST=0.9916;ERATE=0.0105;EUR_AF=0.53;LDAF=0.5102;RSQ=0.9804;SNPSOURCE=EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +16 15128416 rs35811052 A G 100 PASS AA=A;AC=2;AF=0.22;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.11;AVGPOST=0.9984;ERATE=0.0044;EUR_AF=0.27;LDAF=0.2174;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15129459 rs4985155 A G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.31;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.35;LDAF=0.4109;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.84,-0.00 +16 15129970 rs7200543 A G 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.19;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3322;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15131962 rs1135999 A G 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.19;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3327;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15131974 rs1136001 G T 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.19;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3327;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15132108 rs2740 A G 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.18;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3304;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15133889 rs14347 T G 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.19;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3341;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15168760 rs4985147 T C 100 PASS AA=.;AC=2;AF=0.48;AFR_AF=0.20;AMR_AF=0.67;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.59;LDAF=0.4794;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 15820863 rs16967494 C T 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2372;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15838940 rs2384934 G C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.96;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0022;EUR_AF=0.67;LDAF=0.8349;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15839034 rs1050113 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.15;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0019;EUR_AF=0.35;LDAF=0.3031;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15850204 rs2272554 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.78;AMR_AF=0.37;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.44;LDAF=0.5772;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15853596 rs2280764 C G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.76;AMR_AF=0.36;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5520;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 15973654 rs8045082 G T 100 PASS AA=t;AC=2;AF=0.82;AFR_AF=0.76;AMR_AF=0.90;AN=2;ASN_AF=0.75;AVGPOST=0.9962;ERATE=0.0056;EUR_AF=0.86;LDAF=0.8146;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 16138322 rs246221 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.71;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4447;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 16139714 rs35587 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.71;AMR_AF=0.33;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4420;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 16139878 rs35588 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.69;AMR_AF=0.33;AN=2;ASN_AF=0.44;AVGPOST=0.9980;ERATE=0.0006;EUR_AF=0.32;LDAF=0.4369;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 16161976 rs35604 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.90;AMR_AF=0.76;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8170;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 16162019 rs35605 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.91;AMR_AF=0.76;AN=2;ASN_AF=0.77;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8185;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 16184232 rs2074087 C G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.84;LDAF=0.8154;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 16200756 rs11075296 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9766;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 16205449 rs3851716 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9564;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 16230290 rs212087 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.24;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.43;LDAF=0.3048;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 16243952 rs59461468 C T 100 PASS AA=T;AC=1;AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=0.9992;ERATE=0.0008;LDAF=0.0045;RSQ=0.9388;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 16243973 rs3902401 C T 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.07;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0540;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 16244129 rs212097 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.39;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2950;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.05 +16 16248681 rs2066738 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.21;AN=2;ASN_AF=0.20;AVGPOST=0.9957;ERATE=0.0024;EUR_AF=0.17;LDAF=0.1623;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +16 16271357 rs111973031 T C 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 16272670 rs7500834 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 16283973 rs55707615 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.06;AMR_AF=0.29;AN=2;ASN_AF=0.49;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2955;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 16284265 rs2239322 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.06;AMR_AF=0.30;AN=2;ASN_AF=0.49;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2974;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 16284272 rs7193932 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9653;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 16291858 rs12929920 G C 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.56;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=0.9880;ERATE=0.0013;EUR_AF=0.77;LDAF=0.7609;RSQ=0.9777;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.72,-0.00 +16 16291871 rs9940089 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.72;AMR_AF=0.82;AN=2;ASN_AF=0.94;AVGPOST=0.9877;ERATE=0.0024;EUR_AF=0.79;LDAF=0.8170;RSQ=0.9723;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.13,-0.00 +16 16291971 rs9940825 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2394;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 16291983 rs9930886 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.27;AVGPOST=0.9945;ERATE=0.0007;EUR_AF=0.34;LDAF=0.2939;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0150;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 17202801 rs34511974 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.26;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0950;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 17221755 rs3812961 T G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.47;LDAF=0.2593;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 17228368 rs12708815 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.20;AMR_AF=0.61;AN=2;ASN_AF=0.11;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4009;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 17294295 rs11075341 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.84;AMR_AF=0.65;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5873;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 17352816 rs117382759 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0233;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 17352836 rs79173410 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0210;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 18804737 rs2650628 C T 100 PASS AA=N;AC=1;AF=0.30;AFR_AF=0.27;AMR_AF=0.37;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3029;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 18806023 rs71382566 A G 100 PASS AA=a;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1092;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 18810011 rs17663173 T A 100 PASS AA=t;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0503;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 18823379 rs2606556 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9893;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 18847416 rs3816919 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1034;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 18858727 rs2650615 A C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.52;LDAF=0.4072;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 18861335 rs2650613 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.52;LDAF=0.4805;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 18902172 rs9932903 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.15;AMR_AF=0.10;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0691;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.23 +16 19041595 rs28583298 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.20;AMR_AF=0.59;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5659;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 19046960 rs12933286 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.32;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2874;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19049378 rs8043993 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.33;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6047;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19056769 rs12051270 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.12;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5114;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19067933 rs17854511 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.11;AMR_AF=0.53;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.60;LDAF=0.5233;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19079095 rs4531717 T G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.69;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9007;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19083221 rs4782202 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.77;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9269;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19085298 rs11074359 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.30;AMR_AF=0.62;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6087;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19195130 rs11541511 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0875;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19236181 rs2072076 C T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.81;AMR_AF=0.34;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4072;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19455615 rs4782247 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.94;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8472;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19460842 rs6497373 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.91;AMR_AF=0.79;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8318;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19471665 rs6497375 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7824;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19503598 rs1475962 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5457;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 19505730 rs2245423 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5466;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 19509333 rs2245086 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.85;LDAF=0.8510;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19547357 rs10492785 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.28;AMR_AF=0.21;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2203;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19547503 rs3751821 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.36;AMR_AF=0.21;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2381;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19547747 rs226891 C G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8862;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 19548152 rs179050 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.16;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0795;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 19721806 rs720173 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1651;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19800133 rs6497404 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.67;AMR_AF=0.15;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2838;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19800213 rs7191155 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1604;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 19838302 rs75971389 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.17;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1412;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 19838319 rs79851136 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1435;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 19883364 rs61742688 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0800;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.88 +16 20043330 rs2147865 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.63;AMR_AF=0.38;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5233;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20357398 rs4506906 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.23;AMR_AF=0.42;AN=2;ASN_AF=0.09;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.60;LDAF=0.3532;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20360101 rs7193058 G A 100 PASS AA=g;AC=2;AF=0.58;AFR_AF=0.66;AMR_AF=0.60;AN=2;ASN_AF=0.34;AVGPOST=0.9935;ERATE=0.0030;EUR_AF=0.71;LDAF=0.5835;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +16 20370810 rs9652588 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.38;AMR_AF=0.35;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3533;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20370816 rs9652589 C T 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.40;AMR_AF=0.35;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3574;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20376734 rs8052918 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.63;AMR_AF=0.46;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20376755 rs8054266 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.63;AMR_AF=0.46;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4749;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20381047 rs76731137 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0128;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20386115 rs4522429 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.90;LDAF=0.6969;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 20441053 rs8062344 C G 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.67;AMR_AF=0.23;AN=2;ASN_AF=0.58;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.30;LDAF=0.4409;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20441084 rs8063682 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.65;AMR_AF=0.30;AN=2;ASN_AF=0.73;AVGPOST=0.9742;ERATE=0.0111;EUR_AF=0.33;LDAF=0.4992;RSQ=0.9696;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20448330 rs11646020 A G 100 PASS AA=a;AC=1;AF=0.43;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.74;AVGPOST=0.9466;ERATE=0.0159;EUR_AF=0.25;LDAF=0.4214;RSQ=0.9383;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-1.74,-0.01,-5.00 +16 20448520 rs7499667 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.41;AMR_AF=0.25;AN=2;ASN_AF=0.69;AVGPOST=0.9795;ERATE=0.0017;EUR_AF=0.24;LDAF=0.3953;RSQ=0.9729;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20448527 rs7499668 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.45;AMR_AF=0.24;AN=2;ASN_AF=0.71;AVGPOST=0.9815;ERATE=0.0056;EUR_AF=0.24;LDAF=0.4101;RSQ=0.9758;SNPSOURCE=LOWCOV,EXOME;THETA=0.0105;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.42 +16 20471450 rs59292608 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.40;AVGPOST=0.9880;ERATE=0.0051;EUR_AF=0.19;LDAF=0.1881;RSQ=0.9753;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.08 +16 20476852 rs7187246 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.64;AMR_AF=0.28;AN=2;ASN_AF=0.74;AVGPOST=0.9694;ERATE=0.0134;EUR_AF=0.27;LDAF=0.4753;RSQ=0.9587;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|0:1.000:-2.11,-0.01,-1.68 +16 20480818 rs28615302 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.57;AMR_AF=0.28;AN=2;ASN_AF=0.78;AVGPOST=0.9968;ERATE=0.0024;EUR_AF=0.28;LDAF=0.4754;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.01 +16 20482368 rs1827711 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.66;AMR_AF=0.28;AN=2;ASN_AF=0.79;AVGPOST=0.9991;ERATE=0.0025;EUR_AF=0.29;LDAF=0.5025;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.26,-0.02,-5.00 +16 20487125 rs1629314 T G 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.54;AMR_AF=0.27;AN=2;ASN_AF=0.76;AVGPOST=0.9854;ERATE=0.0066;EUR_AF=0.27;LDAF=0.4570;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +16 20488696 rs1700805 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.27;AN=2;ASN_AF=0.74;AVGPOST=0.9913;ERATE=0.0068;EUR_AF=0.28;LDAF=0.4497;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20488803 rs1634306 T A 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.35;AMR_AF=0.62;AN=2;ASN_AF=0.09;AVGPOST=0.9950;ERATE=0.0010;EUR_AF=0.54;LDAF=0.3930;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-3.34,-0.00,-5.00 +16 20552075 rs16970280 G T 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7088;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +16 20554613 rs62035054 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.53;AVGPOST=0.9821;ERATE=0.0009;EUR_AF=0.20;LDAF=0.2492;RSQ=0.9680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-2.03,-0.00,-3.21 +16 20557688 rs12927522 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.07;AMR_AF=0.19;AN=2;ASN_AF=0.62;AVGPOST=0.9898;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2832;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.28 +16 20563528 rs77863699 T C 100 PASS AA=t;AC=1;AF=0.15;AFR_AF=0.36;AMR_AF=0.08;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20570661 rs62035059 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.83;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=0.9389;ERATE=0.0122;EUR_AF=0.95;LDAF=0.9131;RSQ=0.7452;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.850:-0.48,-0.48,-0.48 +16 20576048 rs112352583 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.03;AMR_AF=0.18;AN=2;ASN_AF=0.63;AVGPOST=0.9883;ERATE=0.0006;EUR_AF=0.20;LDAF=0.2665;RSQ=0.9800;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:0.950:-0.48,-0.48,-0.48 +16 20634775 rs3087812 T C 100 PASS AA=t;AC=2;AF=0.31;AFR_AF=0.52;AMR_AF=0.20;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3082;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 20638576 rs1692729 A T 100 PASS AA=t;AC=2;AF=0.58;AFR_AF=0.76;AMR_AF=0.36;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5772;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 20648702 rs151328 G A 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.52;AMR_AF=0.20;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3085;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 20748331 rs11074471 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1257;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20792188 rs5715 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.39;AVGPOST=0.9956;ERATE=0.0027;EUR_AF=0.72;LDAF=0.5911;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20793129 rs13306604 A T 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1257;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20796387 rs5716 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0832;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20800916 rs7196128 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.26;AMR_AF=0.11;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1718;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20802172 rs2301770 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1107;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 20811681 rs2301771 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.64;AMR_AF=0.60;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5978;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20855309 rs9929443 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.66;AMR_AF=0.86;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8300;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20857698 rs34400115 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1257;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20873767 rs7187522 T G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5320;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20966273 rs12924551 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0836;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20966362 rs34051490 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0841;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20975069 rs3743696 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0823;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20975303 rs3743697 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.06;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1124;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20975522 rs3826156 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.05;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0868;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20976360 rs33928718 T G 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0823;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20981162 rs12929546 T C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.23;AMR_AF=0.09;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1481;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 20986506 rs3115438 C T 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.56;AMR_AF=0.49;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4827;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 21008690 rs3115446 T C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.61;AMR_AF=0.49;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 21030897 rs3095922 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 21045369 rs2112494 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0992;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 21051209 rs330150 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.26;AMR_AF=0.09;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1494;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21078693 rs861424 T G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.42;AMR_AF=0.39;AN=2;ASN_AF=0.69;AVGPOST=0.9986;ERATE=0.0041;EUR_AF=0.42;LDAF=0.4859;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 21082163 rs75686265 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0865;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 21136477 rs7191215 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9794;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 21145648 rs11074483 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.20;AMR_AF=0.31;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2683;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 21145657 rs16970950 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.07;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1078;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21147873 rs186087326 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0055;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21151913 rs72780891 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1622;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 21151980 rs8061600 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0850;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21157443 rs79754380 A T 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0834;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21190853 rs1063087 A C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.95;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9781;ERATE=0.0109;EUR_AF=0.74;LDAF=0.8497;RSQ=0.9442;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 21214609 rs75227459 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0311;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0100;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21215672 rs2075526 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.25;AMR_AF=0.34;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0022;EUR_AF=0.26;LDAF=0.3091;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21222596 rs2075519 C A 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.31;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2802;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21222672 rs2075520 C A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.65;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.27;LDAF=0.4200;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 21272591 rs14122 G C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.80;AMR_AF=0.41;AN=2;ASN_AF=0.30;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4765;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 21654369 rs1454372 A T 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1257;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21689879 rs78970023 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.09;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1147;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21690559 rs12445216 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.40;AMR_AF=0.18;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2440;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 21730449 rs215901 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.56;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9974;ERATE=0.0187;EUR_AF=0.63;LDAF=0.5703;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 21742188 rs76494517 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.27;AVGPOST=0.9908;ERATE=0.0007;EUR_AF=0.01;LDAF=0.0888;RSQ=0.9540;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.39 +16 21747556 rs56065183 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.17;AMR_AF=0.45;AN=2;ASN_AF=0.44;AVGPOST=0.9635;ERATE=0.0071;EUR_AF=0.42;LDAF=0.3752;RSQ=0.9419;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:0.900:-0.11,-0.67,-4.40 +16 21747662 rs143890524 G A 100 PASS AA=g;AC=1;AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.20;AVGPOST=0.9849;ERATE=0.0008;EUR_AF=0.01;LDAF=0.0663;RSQ=0.9068;SNPSOURCE=EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:0.800:-0.10,-0.69,-4.70 +16 22128052 rs11649656 T G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.81;AMR_AF=0.86;AN=2;ASN_AF=0.72;AVGPOST=0.9685;ERATE=0.0327;EUR_AF=0.86;LDAF=0.8081;RSQ=0.9232;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 22128053 rs11649657 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.80;AMR_AF=0.85;AN=2;ASN_AF=0.72;AVGPOST=0.9732;ERATE=0.0400;EUR_AF=0.86;LDAF=0.8015;RSQ=0.9340;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 22144318 rs1105929 C T 100 PASS AA=c;AC=1;AF=0.51;AFR_AF=0.75;AMR_AF=0.33;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.28;LDAF=0.5117;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 22161136 rs1991020 T C 100 PASS AA=C;AC=1;AF=0.95;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=0.85;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9500;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 22262514 rs2303186 C A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.54;AMR_AF=0.36;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.5005;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 22268526 rs11640501 A C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.40;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1540;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 22269867 rs4783453 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 22277965 rs1559316 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.66;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=0.9955;ERATE=0.0047;EUR_AF=0.10;LDAF=0.2100;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 22319517 rs2347 T G 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0352;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 22826339 rs208951 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.53;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4140;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23079353 rs8047644 T C 100 PASS AA=t;AC=1;AF=0.92;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.91;LDAF=0.9242;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23098422 rs13339649 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2527;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23117706 rs17740615 C T 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.33;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2931;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23197545 rs5731 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1993;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23197562 rs5732 A G 100 PASS AA=-;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1993;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23200761 rs5734 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.34;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2482;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23200848 rs5735 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.34;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2486;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23221183 rs5740 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.67;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8098;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23383247 rs2303157 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.26;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2569;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 23486197 rs11074559 A G 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.50;AMR_AF=0.75;AN=2;ASN_AF=0.68;AVGPOST=0.9967;ERATE=0.0029;EUR_AF=0.81;LDAF=0.6934;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23489711 rs1135045 C G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.54;AMR_AF=0.75;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7052;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23521643 rs55900703 G C 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.57;AMR_AF=0.75;AN=2;ASN_AF=0.66;AVGPOST=0.9265;ERATE=0.0049;EUR_AF=0.81;LDAF=0.6972;RSQ=0.8765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.950:-3.17,-0.48,-0.18 +16 23535680 rs1468138 A C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7976;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23536684 rs6497671 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7975;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23540798 rs2072062 C T 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.58;AMR_AF=0.75;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7134;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 23541223 rs2072061 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.52;AMR_AF=0.75;AN=2;ASN_AF=0.67;AVGPOST=0.9855;ERATE=0.0066;EUR_AF=0.78;LDAF=0.6869;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23546561 rs2073951 G C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.69;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.84;LDAF=0.7971;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23563501 rs7187920 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.53;AMR_AF=0.75;AN=2;ASN_AF=0.67;AVGPOST=0.9989;ERATE=0.0011;EUR_AF=0.81;LDAF=0.7026;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23641448 rs200875161 A G 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 23699952 rs202103204 T G 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9826;ERATE=0.1111;EUR_AF=0.20;LDAF=0.2200;RSQ=0.9492;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 23721601 rs4967959 T G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.93;AMR_AF=0.59;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6286;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 23768802 rs80950 T G 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.61;AMR_AF=0.58;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7184;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 23848762 rs3729883 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4734;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 24135112 rs1013316 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.49;AMR_AF=0.35;AN=2;ASN_AF=0.84;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.37;LDAF=0.5170;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 24578458 rs7195386 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.89;AMR_AF=0.63;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6094;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 24834233 rs2303085 C T 100 PASS AA=c;AC=2;AF=0.23;AFR_AF=0.13;AMR_AF=0.22;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2313;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 24902194 rs274081 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 24918530 rs34774948 G A 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.03;AMR_AF=0.18;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0846;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 27238034 rs34940876 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.19;AMR_AF=0.25;AN=2;ASN_AF=0.47;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3308;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 27238110 rs1127228 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.19;AMR_AF=0.25;AN=2;ASN_AF=0.47;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3305;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 27356203 rs1805010 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4666;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 27356359 rs2074572 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.38;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.32;LDAF=0.3066;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 27772901 rs4787984 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 27777831 rs8043555 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.86;LDAF=0.8806;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 27802805 rs1644600 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.36;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2269;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 27974487 rs2051743 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.40;AMR_AF=0.65;AN=2;ASN_AF=0.78;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.57;LDAF=0.5983;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28115967 rs200543236 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.8457;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28145148 rs184989 G A 100 PASS AA=G;AC=2;AF=0.09;AFR_AF=0.10;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0923;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28145165 rs181760 T A 100 PASS AA=T;AC=2;AF=0.09;AFR_AF=0.10;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0924;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28177953 rs2303185 A G 100 PASS AA=A;AC=2;AF=0.09;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0923;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.19,-0.00 +16 28222690 rs74014266 G A 100 PASS AA=G;AC=2;AF=0.09;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0932;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +16 28513403 rs181206 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1814;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28601802 rs4149409 G A 100 PASS AA=.;AC=1;AF=0.08;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0804;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 28602991 rs11401 A G 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1652;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 28603335 rs762634 T C 100 PASS AA=.;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=0.9943;ERATE=0.0007;EUR_AF=0.32;LDAF=0.2091;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.15 +16 28603342 rs710410 A G 100 PASS AA=.;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=0.9915;ERATE=0.0013;EUR_AF=0.29;LDAF=0.1866;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.13 +16 28603393 rs27742 T C 100 PASS AA=.;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.91;AVGPOST=0.9494;ERATE=0.0369;EUR_AF=0.90;LDAF=0.8772;RSQ=0.8541;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.66,-0.00 +16 28603655 rs1059491 T G 100 PASS AA=t;AC=1;AF=0.24;AFR_AF=0.22;AMR_AF=0.32;AN=2;ASN_AF=0.09;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2409;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28604686 rs3743963 A G 100 PASS AA=N;AC=2;AF=0.42;AFR_AF=0.44;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.47;LDAF=0.4217;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28607070 rs4149406 A G 100 PASS AA=a;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.33;AN=2;ASN_AF=0.09;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.34;LDAF=0.2462;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.39 +16 28607228 rs1690407 A G 100 PASS AA=N;AC=1;AF=0.17;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.07;AVGPOST=0.9670;ERATE=0.0028;EUR_AF=0.22;LDAF=0.1682;RSQ=0.9263;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.850:-0.56,-0.22,-0.91 +16 28607232 rs1136703 A G 100 PASS AA=N;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.07;AVGPOST=0.9722;ERATE=0.0005;EUR_AF=0.23;LDAF=0.1632;RSQ=0.9360;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:0.900:-0.56,-0.22,-0.91 +16 28617128 rs6839 T C 100 PASS AA=t;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.09;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.32;LDAF=0.2322;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28617361 rs41278162 G A 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.20;AMR_AF=0.29;AN=2;ASN_AF=0.09;AVGPOST=0.9928;ERATE=0.0011;EUR_AF=0.30;LDAF=0.2223;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +16 28617485 rs1801030 C T 100 PASS AA=t;AC=2;AF=0.89;AFR_AF=0.63;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=0.9773;ERATE=0.0122;EUR_AF=0.96;LDAF=0.8893;RSQ=0.9333;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +16 28617507 rs41278160 C T 100 PASS AA=c;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=0.9986;ERATE=0.0011;EUR_AF=0.03;LDAF=0.0632;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 28617514 rs9282861 C T 100 PASS AA=c;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.29;AN=2;ASN_AF=0.09;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2313;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +16 28618068 rs74752114 G A 100 PASS AA=a;AC=1;AF=0.25;AFR_AF=0.17;AMR_AF=0.34;AN=2;ASN_AF=0.20;AVGPOST=0.9962;ERATE=0.0006;EUR_AF=0.28;LDAF=0.2473;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28618071 rs3020805 C G 100 PASS AA=N;AC=1;AF=0.25;AFR_AF=0.17;AMR_AF=0.34;AN=2;ASN_AF=0.20;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2468;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28618237 rs9282862 T C 100 PASS AA=N;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.20;AVGPOST=0.9970;ERATE=0.0017;EUR_AF=0.26;LDAF=0.2316;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28618238 rs7499134 A G 100 PASS AA=N;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0036;EUR_AF=0.98;LDAF=0.9608;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28618446 rs2925623 T C 100 PASS AA=N;AC=1;AF=0.27;AFR_AF=0.21;AMR_AF=0.36;AN=2;ASN_AF=0.21;AVGPOST=0.9928;ERATE=0.0007;EUR_AF=0.32;LDAF=0.2751;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +16 28631360 rs28410083 A T 100 PASS AA=t;AC=1;AF=0.69;AFR_AF=0.49;AMR_AF=0.65;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6878;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28634425 rs56148728 C T 100 PASS AA=c;AC=2;AF=0.11;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9716;ERATE=0.0014;EUR_AF=0.12;LDAF=0.1151;RSQ=0.8879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:1.900:-3.06,-0.47,-0.18 +16 28734477 rs202014506 G T 100 PASS AA=.;AC=1;AF=0.15;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=0.9097;ERATE=0.0088;EUR_AF=0.17;LDAF=0.1715;RSQ=0.7210;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:0.700:-0.48,-0.48,-0.48 +16 28837203 rs62036622 T G 100 PASS AA=.;AC=2;AF=0.22;AFR_AF=0.02;AMR_AF=0.39;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2226;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +16 28837515 rs8049439 T C 100 PASS AA=.;AC=2;AF=0.36;AFR_AF=0.42;AMR_AF=0.42;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3588;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28842311 rs4344749 A G 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9304;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28844365 rs62036657 G A 100 PASS AA=.;AC=2;AF=0.27;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2669;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28846840 rs56404918 T G 100 PASS AA=.;AC=2;AF=0.27;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2669;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 28846866 rs55719896 G A 100 PASS AA=.;AC=2;AF=0.27;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2670;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28847246 rs12928404 T C 100 PASS AA=.;AC=2;AF=0.44;AFR_AF=0.49;AMR_AF=0.51;AN=2;ASN_AF=0.46;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4382;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28855522 rs61737565 G C 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2669;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28855727 rs4788099 A G 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2669;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28883241 rs7498665 A G 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2665;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28883327 rs28433345 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.74;AMR_AF=0.74;AN=2;ASN_AF=0.73;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.59;LDAF=0.6832;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28883841 rs62037369 C T 100 PASS AA=C;AC=2;AF=0.22;AFR_AF=0.01;AMR_AF=0.38;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2184;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28890131 rs62037371 C A 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2665;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 28896015 rs11642449 C T 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.20;AMR_AF=0.37;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2495;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +16 28898793 rs6565259 T C 100 PASS AA=t;AC=2;AF=0.33;AFR_AF=0.48;AMR_AF=0.40;AN=2;ASN_AF=0.17;AVGPOST=0.9958;ERATE=0.0067;EUR_AF=0.32;LDAF=0.3281;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 28914608 rs80340245 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9986;ERATE=0.0004;LDAF=0.0170;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 28992755 rs4539629 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0247;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 28995145 rs4788114 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.17;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0591;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 29675846 rs150195220 C T 100 PASS AA=.;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9996;ERATE=0.0017;LDAF=0.0098;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 29708350 rs9932770 A G 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9990;RSQ=0.9336;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +16 29811319 rs235648 C T 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9218;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 29814234 rs2450399 G A 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9218;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 29817998 rs111993640 C T 100 PASS AA=c;AC=2;AF=0.90;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=0.94;AVGPOST=0.8835;ERATE=0.0112;EUR_AF=0.98;LDAF=0.8572;RSQ=0.6618;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-3.12,-0.47,-0.18 +16 29824787 rs79182085 C G 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0316;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 29825126 rs11150573 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9934;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 29908433 rs11649499 C G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.98;AMR_AF=0.78;AN=2;ASN_AF=0.56;AVGPOST=0.9945;ERATE=0.0006;EUR_AF=0.83;LDAF=0.7855;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-0.09,-0.73,-5.00 +16 29909329 rs188531354 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.09;AN=2;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0149;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 29994922 rs3814883 C T 100 PASS AA=c;AC=1;AF=0.37;AFR_AF=0.12;AMR_AF=0.40;AN=2;ASN_AF=0.44;AVGPOST=0.9968;ERATE=0.0128;EUR_AF=0.46;LDAF=0.3678;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 30007946 rs184542030 A C 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.09;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0160;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.30 +16 30012229 rs201192192 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 30018617 rs199801773 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 30034986 rs79063905 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9965;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0433;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 30081367 rs2071390 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.50;AVGPOST=0.9955;ERATE=0.0006;EUR_AF=0.16;LDAF=0.2238;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 30081476 rs77290575 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0169;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 30097630 rs2289292 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.50;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3145;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 30119525 rs8061772 C A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.83;AMR_AF=0.88;AN=2;ASN_AF=0.98;AVGPOST=0.9967;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8883;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30198151 rs1132812 A G 100 PASS AA=.;AC=2;AF=0.78;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.93;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.59;LDAF=0.7744;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30390314 rs12447833 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.92;AMR_AF=0.79;AN=2;ASN_AF=0.91;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8185;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30393660 rs4787643 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.75;AMR_AF=0.78;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7773;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30408765 rs12921440 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.41;AMR_AF=0.71;AN=2;ASN_AF=0.91;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6758;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30410445 rs4788413 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.92;AMR_AF=0.79;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.69;LDAF=0.8183;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30495412 rs2285459 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.69;AMR_AF=0.72;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7436;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30505513 rs4350585 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.99;AVGPOST=0.9913;ERATE=0.0078;EUR_AF=0.69;LDAF=0.7576;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30510571 rs1557672 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3657;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30724070 rs4889500 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9748;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30734963 rs4889502 C A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9831;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30762640 rs4889504 C T 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9712;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +16 30773822 rs1550477 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9711;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +16 30779716 rs7195142 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30780828 rs4889506 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9831;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30938811 rs12930545 A G 100 PASS AA=a;AC=2;AF=0.62;AFR_AF=0.25;AMR_AF=0.61;AN=2;ASN_AF=0.93;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.65;LDAF=0.6244;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.53,-0.01 +16 30964940 rs9926903 A G 100 PASS AA=g;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9889;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30976694 rs199846877 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +16 30980902 rs897986 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.26;AMR_AF=0.61;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6247;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30999142 rs9938550 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.25;AMR_AF=0.60;AN=2;ASN_AF=0.93;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.64;LDAF=0.6230;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 30999462 rs2305880 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.25;AMR_AF=0.60;AN=2;ASN_AF=0.93;AVGPOST=0.9984;ERATE=0.0014;EUR_AF=0.64;LDAF=0.6230;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 31075175 rs2303223 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.92;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.40;LDAF=0.4595;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +16 31075708 rs2032917 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9838;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31088347 rs749671 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.92;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.39;LDAF=0.4628;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31088625 rs749670 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4589;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +16 31099011 rs11150606 T C 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.78;AVGPOST=0.9884;ERATE=0.0004;EUR_AF=0.04;LDAF=0.2512;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31121793 rs14235 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.09;AMR_AF=0.40;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4653;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31141826 rs1549295 A G 100 PASS AA=g;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9858;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31141880 rs1549294 A G 100 PASS AA=g;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9670;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31153105 rs1549300 A G 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.51;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8866;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31154146 rs1549299 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.18;AMR_AF=0.59;AN=2;ASN_AF=0.92;AVGPOST=0.9892;ERATE=0.0007;EUR_AF=0.70;LDAF=0.6228;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.18,-0.00 +16 31195279 rs1052352 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.21;AMR_AF=0.53;AN=2;ASN_AF=0.78;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5343;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31230463 rs7186832 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.45;AMR_AF=0.63;AN=2;ASN_AF=0.78;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6500;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +16 31273129 rs3764327 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.78;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7219;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31336719 rs1143682 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3925;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31342608 rs7188189 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0005;EUR_AF=0.89;LDAF=0.9444;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +16 31371193 rs4264407 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9357;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31374535 rs2230429 C G 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.74;AVGPOST=0.9978;ERATE=0.0019;EUR_AF=0.35;LDAF=0.4055;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31384554 rs2070896 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.67;AVGPOST=0.9981;ERATE=0.0013;EUR_AF=0.37;LDAF=0.4462;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31388355 rs201039279 A G 100 PASS AA=A;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0014;RSQ=0.9709;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 31392189 rs11150620 G C 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.60;AVGPOST=0.9987;ERATE=0.0017;EUR_AF=0.28;LDAF=0.3258;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31422429 rs12444660 T C 100 PASS AA=t;AC=2;AF=0.91;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9113;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 31476458 rs11150624 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.06;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3921;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 31488916 rs10596 C G 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.06;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9935;ERATE=0.0005;EUR_AF=0.45;LDAF=0.3912;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.050:-3.70,-0.51,-0.16 +16 31519048 rs11861164 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8923;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +16 31926619 rs3850114 G A 100 PASS AA=.;AC=2;AF=0.88;AFR_AF=0.55;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8765;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 46642286 rs34559393 G A 100 PASS AA=.;AC=1;AF=0.12;AMR_AF=0.07;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.03;LDAF=0.1251;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 46655210 rs6598679 A G 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9875;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 46696284 rs168745 G A 100 PASS AA=.;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9785;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 46697098 rs2304492 A G 100 PASS AA=.;AC=2;AF=0.46;AFR_AF=0.11;AMR_AF=0.48;AN=2;ASN_AF=0.55;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.62;LDAF=0.4633;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 46764482 rs36460 A C 100 PASS AA=a;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9976;ERATE=0.0051;EUR_AF=1.00;LDAF=0.9805;RSQ=0.9471;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 46773999 rs28407821 C A 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.11;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.62;LDAF=0.4679;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 46956292 . G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0064;RSQ=0.9872;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 47294448 rs200576597 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 47347780 rs2058769 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.12;AMR_AF=0.53;AN=2;ASN_AF=0.75;AVGPOST=0.9983;ERATE=0.0008;EUR_AF=0.42;LDAF=0.4600;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 47462851 rs17811434 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.12;AMR_AF=0.53;AN=2;ASN_AF=0.77;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4652;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 48122582 rs7193955 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.14;AMR_AF=0.54;AN=2;ASN_AF=0.90;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.80;LDAF=0.6340;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 48212592 rs138522850 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.0050;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 48234402 rs181635529 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0040;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 48258198 rs17822931 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.90;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.14;LDAF=0.3080;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 49412531 rs27813 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.82;AMR_AF=0.63;AN=2;ASN_AF=0.73;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6976;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 49670390 rs3803667 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2203;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 49672520 rs3803665 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.90;AMR_AF=0.42;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.44;LDAF=0.5535;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 50059279 rs9934704 C A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.84;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9877;ERATE=0.0017;EUR_AF=0.89;LDAF=0.9084;RSQ=0.9394;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-0.89,-0.39,-0.33 +16 50069312 rs2041918 C G 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.34;AMR_AF=0.71;AN=2;ASN_AF=0.62;AVGPOST=0.9983;ERATE=0.0009;EUR_AF=0.72;LDAF=0.6067;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 50100214 rs7192665 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.11;AN=2;ASN_AF=0.30;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.07;LDAF=0.1466;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +16 50100253 rs4389139 T A 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.33;AMR_AF=0.70;AN=2;ASN_AF=0.62;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.72;LDAF=0.6036;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.49 +16 50100274 rs6500280 G C 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.52;AMR_AF=0.20;AN=2;ASN_AF=0.30;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2906;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 50104234 rs7191384 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1596;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 50106594 rs2287197 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.33;AMR_AF=0.71;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6051;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 50109478 rs12931497 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6554;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 50118245 rs877639 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6545;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 50120122 rs2287196 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6545;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +16 50128572 rs60561577 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0024;EUR_AF=0.07;LDAF=0.1417;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 50326661 rs8051594 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9870;ERATE=0.0098;EUR_AF=0.99;LDAF=0.9866;RSQ=0.6362;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 50328526 rs2302717 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.19;AMR_AF=0.32;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3803;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.53,-0.01 +16 50355996 rs7184802 G A 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.39;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2838;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 50368663 rs1062348 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.10;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2435;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 50388657 rs4407056 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 50642201 rs933566 G C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.77;AMR_AF=0.59;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.45;LDAF=0.6880;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 50827601 rs2302759 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.74;AVGPOST=0.9890;ERATE=0.0007;EUR_AF=0.82;LDAF=0.8205;RSQ=0.9729;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 51171175 rs4614723 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9943;ERATE=0.0109;EUR_AF=0.99;LDAF=0.9765;RSQ=0.9052;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 51173559 rs1965024 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.13;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5416;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 53341748 rs6499548 T G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.78;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8242;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 53878247 rs62033438 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.38;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4181;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 53913930 rs11076004 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.18;AMR_AF=0.48;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4487;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +16 54319571 rs1868692 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9649;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.58,-0.01 +16 54967096 rs13336114 C A 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.26;AMR_AF=0.34;AN=2;ASN_AF=0.53;AVGPOST=0.9626;ERATE=0.0011;EUR_AF=0.32;LDAF=0.3684;RSQ=0.9405;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-2.30,-0.01,-2.11 +16 55360208 rs31081 G T 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.45;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9675;ERATE=0.0162;EUR_AF=0.73;LDAF=0.7039;RSQ=0.9453;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +16 55361493 rs31082 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3158;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55363238 rs31087 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3495;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55519535 rs1132896 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.37;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2390;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55523705 rs243849 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.65;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7801;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55525913 rs243846 G C 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.47;AMR_AF=0.69;AN=2;ASN_AF=0.57;AVGPOST=0.9916;ERATE=0.0027;EUR_AF=0.82;LDAF=0.6534;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.09,-0.74 +16 55527026 rs11640428 A T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.17;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3520;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55527113 rs2287074 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.17;AMR_AF=0.44;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3492;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55536687 rs243834 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.39;AMR_AF=0.46;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4840;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 55536727 rs14070 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3436;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55543073 rs17302903 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.07;AMR_AF=0.44;AN=2;ASN_AF=0.23;AVGPOST=0.9949;ERATE=0.0010;EUR_AF=0.48;LDAF=0.3173;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.18 +16 55562257 rs837549 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 55562466 rs837550 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.34;AMR_AF=0.60;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5198;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55583149 rs2160277 T A 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.60;AMR_AF=0.81;AN=2;ASN_AF=0.74;AVGPOST=0.9605;ERATE=0.0441;EUR_AF=0.76;LDAF=0.7233;RSQ=0.9179;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 55731835 rs5569 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.36;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2697;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55731946 rs998424 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.36;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.36;LDAF=0.2687;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55853446 rs4513095 C A 100 PASS AA=.;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0298;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 55883618 rs2160276 T C 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.66;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7354;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 55883725 rs12447097 C T 100 PASS AA=.;AC=2;AF=0.09;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0930;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 55895285 rs12446482 G T 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1309;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +16 55897233 rs11076125 G C 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.27;AMR_AF=0.16;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +16 55897289 rs11076126 C T 100 PASS AA=T;AC=2;AF=0.13;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1330;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 55905636 rs3859108 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9916;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 55907811 rs2397965 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.39;AMR_AF=0.20;AN=2;ASN_AF=0.32;AVGPOST=0.9989;ERATE=0.0012;EUR_AF=0.16;LDAF=0.2581;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 55909163 rs7194945 T C 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6027;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 56362725 rs2241952 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.34;AMR_AF=0.70;AN=2;ASN_AF=0.76;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.63;LDAF=0.6128;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56368689 rs1065375 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.40;AMR_AF=0.56;AN=2;ASN_AF=0.74;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5173;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56441862 rs2920704 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.86;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6367;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56442066 rs4238787 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.84;AMR_AF=0.52;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5809;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56485554 rs11076155 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0574;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56548501 rs4784677 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9959;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 56601720 rs666636 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.76;AMR_AF=0.96;AN=2;ASN_AF=0.73;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.96;LDAF=0.8566;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56601722 rs666647 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.80;AMR_AF=0.97;AN=2;ASN_AF=0.73;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8666;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56660906 rs708274 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1563;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56667282 rs1827210 C A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.54;AMR_AF=0.80;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7300;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56667614 rs2270836 C T 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.18;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3301;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56673143 rs11076160 A G 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.48;AMR_AF=0.72;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6613;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56673148 rs11076161 A G 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.48;AMR_AF=0.72;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6613;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56673227 rs11640851 C A 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.25;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9989;ERATE=0.0009;EUR_AF=0.64;LDAF=0.5194;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56673249 rs11647171 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.38;AMR_AF=0.63;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5506;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56673290 rs7190725 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.14;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1495;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56673828 rs8052394 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.15;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1594;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56686470 rs12051311 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4662;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56686471 rs964374 G T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0022;EUR_AF=0.51;LDAF=0.3865;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56686852 rs8047981 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3843;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 56700907 rs72784736 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1207;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56701294 rs2298847 T A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2349;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56864398 rs1561140 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.75;AMR_AF=0.60;AN=2;ASN_AF=0.83;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6537;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 56864618 rs4461062 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.56;AMR_AF=0.50;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5238;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 56868700 rs1347591 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5169;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 56878378 rs74498124 C T 100 PASS AA=C;AC=2;AF=0.06;AFR_AF=0.09;AMR_AF=0.08;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0572;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 56904587 rs1529927 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9816;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 56912069 rs117440321 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0060;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56913513 rs5801 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.16;AMR_AF=0.11;AN=2;ASN_AF=0.05;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1354;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56917953 rs2304483 T C 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.72;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5562;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56921829 rs13306676 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1010;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56926828 rs2278489 T C 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.92;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9780;ERATE=0.0026;EUR_AF=0.62;LDAF=0.7080;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56936319 rs12708965 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.08;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0370;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56938387 rs2289115 C T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.58;AMR_AF=0.30;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3209;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 56969148 rs2217332 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1183;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57005301 rs1532625 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3053;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57007446 rs11076176 T G 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.47;AMR_AF=0.27;AN=2;ASN_AF=0.27;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2885;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57007451 rs289714 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.39;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6730;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57057654 rs1672865 A G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.69;AMR_AF=0.66;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.57;LDAF=0.7025;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.99,-0.00 +16 57060340 rs34531240 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.15;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2555;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57060353 rs28438857 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.15;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2555;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57060967 rs74592648 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1769;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57062177 rs1684576 T A 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5049;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57068106 rs3995818 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.48;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1392;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57068107 rs3995817 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.50;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.12;LDAF=0.2363;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57069992 rs113408105 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.15;AMR_AF=0.06;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0625;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57071113 rs78176773 T C 100 PASS AA=c;AC=2;AF=0.50;AFR_AF=0.45;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9848;ERATE=0.0694;EUR_AF=0.60;LDAF=0.5007;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57071114 rs1672867 A G 100 PASS AA=g;AC=2;AF=0.95;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9925;ERATE=0.0229;EUR_AF=0.91;LDAF=0.9445;RSQ=0.9446;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57071209 rs9926871 T C 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9957;ERATE=0.0009;EUR_AF=0.12;LDAF=0.1063;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57071232 rs1684580 C G 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.36;AMR_AF=0.61;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5338;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57071236 rs55857123 C T 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1056;RSQ=0.9993;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57073683 rs864750 G C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.94;AMR_AF=0.83;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57075406 rs56171037 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0508;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57076018 rs919377 G C 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0540;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.86 +16 57080528 rs289723 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.29;AN=2;ASN_AF=0.13;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.25;LDAF=0.1790;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57091950 rs7201038 C A 100 PASS AA=A;AC=2;AF=0.12;AFR_AF=0.14;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0013;EUR_AF=0.08;LDAF=0.1159;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.34,-0.02 +16 57091977 rs7206703 T C 100 PASS AA=C;AC=2;AF=0.12;AFR_AF=0.15;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1152;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57100401 rs188134690 G A 100 PASS AA=G;AC=1;AF=0.0014;AFR_AF=0.0041;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0008;LDAF=0.0015;RSQ=0.9405;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57101340 rs7190199 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0973;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57101373 rs7185320 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0969;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57103854 rs289711 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.42;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3808;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-2.15 +16 57108465 rs7205801 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.05;LDAF=0.1934;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57111232 rs11864231 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1799;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57113229 rs42221 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.66;AMR_AF=0.79;AN=2;ASN_AF=0.85;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7788;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57114982 rs154044 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.40;AMR_AF=0.61;AN=2;ASN_AF=0.85;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6228;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.26 +16 57115400 rs188032480 G A 100 PASS AA=G;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +16 57116287 rs27195 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.79;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7975;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57153441 rs75543218 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.09;AN=2;ASN_AF=0.28;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1099;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57168651 rs2305694 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0795;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57171233 rs2305693 C G 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9221;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57180158 rs2279407 C A 100 PASS AA=C;AC=1;AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0741;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.36,-0.00,-5.00 +16 57255363 rs7206038 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9653;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57290788 rs3751707 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1185;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57392733 rs4359426 A C 100 PASS AA=C;AC=1;AF=0.92;AFR_AF=0.95;AMR_AF=0.87;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9214;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57392816 rs2074543 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0851;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57492176 rs78846023 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57504874 rs55780256 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57509164 rs223877 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.96;AMR_AF=0.66;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7244;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57551966 rs28649020 A T 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.44;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.25;LDAF=0.2245;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57552088 rs28756858 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.44;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2244;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57555076 rs28446687 C T 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.29;AMR_AF=0.16;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1846;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57562804 rs12935069 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9928;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9951;RSQ=0.3872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +16 57595999 rs1004363 A G 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.55;AMR_AF=0.41;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4305;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57601792 rs9937918 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.38;AMR_AF=0.52;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4634;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +16 57609392 rs150635750 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57689385 rs1801257 C G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.88;AMR_AF=0.66;AN=2;ASN_AF=0.85;AVGPOST=0.9979;ERATE=0.0014;EUR_AF=0.48;LDAF=0.6943;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57689883 rs1376041 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.80;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.68;LDAF=0.7994;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57697532 rs10852554 T G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.89;AMR_AF=0.76;AN=2;ASN_AF=0.94;AVGPOST=0.9963;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8241;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57710077 rs72793600 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.32;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2171;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57713250 rs4238795 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.84;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5737;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57722328 rs12444859 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.46;AMR_AF=0.30;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3409;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57736047 rs72795521 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.16;LDAF=0.1977;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57738740 rs7194271 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2340;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57758508 rs12598604 A C 100 PASS AA=.;AC=2;AF=0.22;AFR_AF=0.26;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2198;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57758758 rs114106851 G A 100 PASS AA=.;AC=1;AF=0.0032;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0009;LDAF=0.0030;RSQ=0.9550;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57762401 rs2923147 T C 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.70;AMR_AF=0.30;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3863;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57778351 rs145567409 A G 100 PASS AA=A;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0018;RSQ=0.9879;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +16 57785813 rs34438625 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.14;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57787027 rs12922275 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0013;EUR_AF=0.04;LDAF=0.0819;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57789288 rs61729337 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.14;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0010;LDAF=0.0316;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57798091 rs139069247 G A 100 PASS AA=g;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0007;LDAF=0.0028;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57803911 rs3803590 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.49;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6618;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57805176 rs2967165 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.49;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6617;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57937856 rs413562 G C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9783;ERATE=0.0084;EUR_AF=0.84;LDAF=0.8264;RSQ=0.9576;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.56,-0.01 +16 57937895 rs437920 G A 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.67;AMR_AF=0.78;AN=2;ASN_AF=0.66;AVGPOST=0.9862;ERATE=0.0008;EUR_AF=0.84;LDAF=0.7470;RSQ=0.9735;SNPSOURCE=LOWCOV,EXOME;THETA=0.0223;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57946937 rs8044629 A T 100 PASS AA=a;AC=1;AF=0.17;AFR_AF=0.55;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1700;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57949251 rs483053 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.45;AMR_AF=0.44;AN=2;ASN_AF=0.54;AVGPOST=0.9973;ERATE=0.0020;EUR_AF=0.50;LDAF=0.4918;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57950057 rs376270 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.53;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3476;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57951394 rs3991715 T G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.43;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2834;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 57951421 rs691490 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.15;AMR_AF=0.30;AN=2;ASN_AF=0.54;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3399;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 57954268 rs166000 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.70;AMR_AF=0.59;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6553;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57957138 rs247065 G C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.82;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=0.9957;ERATE=0.0008;EUR_AF=0.60;LDAF=0.6802;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +16 57984483 rs152143 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9912;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57991317 rs503686 C T 100 PASS AA=c;AC=2;AF=0.68;AFR_AF=0.29;AMR_AF=0.80;AN=2;ASN_AF=0.84;AVGPOST=0.9979;ERATE=0.0014;EUR_AF=0.77;LDAF=0.6852;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +16 57993919 rs192628905 T A 100 PASS AA=T;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.0035;AVGPOST=0.9976;ERATE=0.0005;LDAF=0.0030;RSQ=0.7276;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.750:-2.87,-0.01,-1.66 +16 57994724 rs2288485 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2249;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +16 57996960 rs13336595 C T 100 PASS AA=c;AC=2;AF=0.77;AFR_AF=0.64;AMR_AF=0.85;AN=2;ASN_AF=0.84;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7737;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 57998345 rs3859043 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.47;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.77;LDAF=0.7294;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 58019396 rs9934227 G A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.95;AMR_AF=0.67;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7692;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58030401 rs3743555 T C 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.79;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6467;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-2.13,-0.00,-3.70 +16 58030634 rs3743556 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.79;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6462;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58036347 rs3743560 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.46;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=0.9978;ERATE=0.0011;EUR_AF=0.70;LDAF=0.5625;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58048142 rs9924482 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0219;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58313566 rs6499945 T G 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.39;AVGPOST=0.9980;ERATE=0.0024;EUR_AF=0.57;LDAF=0.5316;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58314433 rs2241414 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0969;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58314598 rs1052276 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0969;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58318486 rs146088754 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0130;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58318604 rs3815803 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.73;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5260;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58327646 rs2288012 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.91;AMR_AF=0.65;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7405;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 58327742 rs2288013 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0942;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58545426 rs42945 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.95;AMR_AF=0.71;AN=2;ASN_AF=0.97;AVGPOST=0.9980;ERATE=0.0015;EUR_AF=0.58;LDAF=0.7885;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 58549932 rs4784046 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.96;AVGPOST=0.9957;ERATE=0.0007;EUR_AF=0.58;LDAF=0.7439;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.80 +16 58552921 rs3607 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7449;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58566304 rs37060 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2816;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58573901 rs246194 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2834;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58579274 rs246258 C T 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2834;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58580530 rs173475 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2834;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 58616984 rs17854029 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2235;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58711342 rs75896519 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.19;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0503;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58713894 rs7193572 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.45;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.1106;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58713998 rs34698978 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.29;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0718;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58743454 rs30842 A C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.89;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7381;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 58750604 rs1058192 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.88;AMR_AF=0.76;AN=2;ASN_AF=0.64;AVGPOST=0.9980;ERATE=0.0041;EUR_AF=0.64;LDAF=0.7140;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +16 58756075 rs75336120 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0183;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 58757668 rs14221 A C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.86;AMR_AF=0.75;AN=2;ASN_AF=0.62;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.64;LDAF=0.7009;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 58757683 rs257636 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.80;AMR_AF=0.74;AN=2;ASN_AF=0.58;AVGPOST=0.9934;ERATE=0.0083;EUR_AF=0.63;LDAF=0.6709;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 58757695 rs8059441 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0183;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 61687701 rs16963768 C T 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1202;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 65005462 rs12597529 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.33;AMR_AF=0.49;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5265;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 65016087 rs35213 A C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.43;AMR_AF=0.74;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7637;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 65022234 rs1130821 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2230;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 65025658 rs35196 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9204;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 65025849 rs35194 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9195;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 66413195 rs7499886 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.58;AMR_AF=0.58;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0023;EUR_AF=0.39;LDAF=0.4969;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 66420885 rs1130844 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.58;AMR_AF=0.63;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6394;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 66432423 rs1049970 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.79;AVGPOST=0.9967;ERATE=0.0318;EUR_AF=0.65;LDAF=0.7061;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 66759682 rs2305311 C A 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.63;AMR_AF=0.50;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5434;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 66861966 rs152164 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.08;AMR_AF=0.41;AN=2;ASN_AF=0.63;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3712;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 66885652 rs151460 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.86;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6295;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.05,-0.00 +16 66995333 rs71647884 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0096;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 67221050 rs9924876 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9876;ERATE=0.0022;EUR_AF=0.98;LDAF=0.9837;RSQ=0.6933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 67233266 rs12923138 A C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.95;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=0.9579;ERATE=0.0012;EUR_AF=0.45;LDAF=0.5512;RSQ=0.9401;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 67316600 rs7200919 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.95;AMR_AF=0.41;AN=2;ASN_AF=0.17;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.44;LDAF=0.4787;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 67691668 rs6979 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.97;AMR_AF=0.51;AN=2;ASN_AF=0.14;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5184;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 67861501 rs34693072 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0213;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 67863451 rs3743733 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.96;AMR_AF=0.50;AN=2;ASN_AF=0.12;AVGPOST=0.9953;ERATE=0.0005;EUR_AF=0.49;LDAF=0.5006;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 67917958 rs34607252 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0205;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 67991972 rs78818722 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.07;LDAF=0.0348;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68010161 rs186404684 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0092;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 68025801 rs255051 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 68057096 rs237831 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9935;ERATE=0.0007;EUR_AF=0.92;LDAF=0.9586;RSQ=0.9350;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +16 68100461 rs2285912 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.96;AMR_AF=0.49;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5172;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68110672 rs201931510 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8551;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +16 68344696 rs3803650 C T 100 PASS AA=c;AC=1;AF=0.70;AFR_AF=0.82;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6947;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68387373 rs1562479 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.48;AMR_AF=0.59;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5864;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68387496 rs1868159 A C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8131;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68389772 rs1131933 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.61;AMR_AF=0.54;AN=2;ASN_AF=0.79;AVGPOST=0.9945;ERATE=0.0018;EUR_AF=0.40;LDAF=0.5733;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68395094 rs2279539 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.48;AMR_AF=0.59;AN=2;ASN_AF=0.79;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5858;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68398924 rs1868158 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.70;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6622;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68598007 rs1177648 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.17;AMR_AF=0.59;AN=2;ASN_AF=0.78;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5494;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 68712217 rs2296410 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8322;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 68732049 rs3114409 A C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.22;AVGPOST=0.9963;ERATE=0.0019;EUR_AF=0.26;LDAF=0.2162;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 68771372 rs3743674 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.67;AMR_AF=0.80;AN=2;ASN_AF=0.74;AVGPOST=0.9838;ERATE=0.0019;EUR_AF=0.87;LDAF=0.7743;RSQ=0.9640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.08,-0.75,-5.00 +16 68857441 rs1801552 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.93;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6939;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 68862165 rs33964119 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0580;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 69143577 rs2232228 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.50;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3709;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 69377553 rs153060 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=0.9986;ERATE=0.0029;EUR_AF=0.34;LDAF=0.2975;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 69395434 rs251796 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2590;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 69458779 rs1619397 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3570;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 69493004 rs34661695 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0531;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 69745145 rs1800566 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.18;AMR_AF=0.33;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2761;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 69752464 rs689452 C G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.88;AMR_AF=0.93;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8359;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 69782855 rs3811348 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.12;AMR_AF=0.48;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.60;LDAF=0.3757;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 69873992 rs2291959 T G 100 PASS AA=g;AC=1;AF=0.74;AFR_AF=0.93;AMR_AF=0.65;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7365;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 69963355 rs1566452 G A 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.92;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8469;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 69965024 rs2270840 A T 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.94;AMR_AF=0.80;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8528;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 69967897 rs2270841 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.92;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8468;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 69970329 rs1983016 A G 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.89;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8373;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 69988260 rs684036 G A 100 PASS AA=.;AC=2;AF=0.17;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.12;AVGPOST=0.9232;ERATE=0.0029;EUR_AF=0.25;LDAF=0.1736;RSQ=0.8314;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:1.900:-0.48,-0.48,-0.48 +16 69988319 rs3869427 T C 100 PASS AA=.;AC=2;AF=0.27;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.21;AVGPOST=0.9578;ERATE=0.0082;EUR_AF=0.39;LDAF=0.2691;RSQ=0.9216;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:1.850:-0.48,-0.48,-0.48 +16 69988359 rs2549095 A G 100 PASS AA=.;AC=2;AF=0.11;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.05;AVGPOST=0.9280;ERATE=0.0113;EUR_AF=0.17;LDAF=0.1233;RSQ=0.7939;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.650:-3.49,-0.50,-0.17 +16 69988373 rs2549097 T C 100 PASS AA=.;AC=2;AF=0.80;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.95;AVGPOST=0.9527;ERATE=0.0050;EUR_AF=0.66;LDAF=0.7933;RSQ=0.9222;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:1.800:-0.60,-0.21,-0.88 +16 70161263 rs2549532 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.30;AMR_AF=0.53;AN=2;ASN_AF=0.35;AVGPOST=0.9467;ERATE=0.0478;EUR_AF=0.47;LDAF=0.4072;RSQ=0.9010;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +16 70164334 rs10852462 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.37;AMR_AF=0.32;AN=2;ASN_AF=0.23;AVGPOST=0.9830;ERATE=0.0114;EUR_AF=0.40;LDAF=0.3370;RSQ=0.9441;SNPSOURCE=EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.44 +16 70177577 rs2303198 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9812;ERATE=0.0079;EUR_AF=0.31;LDAF=0.2814;RSQ=0.9537;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 0|1:1.000:-2.74,-0.45,-0.19 +16 70182325 rs55843501 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.40;AMR_AF=0.44;AN=2;ASN_AF=0.34;AVGPOST=0.9450;ERATE=0.0403;EUR_AF=0.47;LDAF=0.4101;RSQ=0.8950;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.19,-0.00 +16 70187270 rs2287980 T G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.29;AMR_AF=0.28;AN=2;ASN_AF=0.24;AVGPOST=0.9925;ERATE=0.0273;EUR_AF=0.39;LDAF=0.3097;RSQ=0.9773;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 70190401 rs6499302 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.37;AMR_AF=0.33;AN=2;ASN_AF=0.26;AVGPOST=0.9867;ERATE=0.0135;EUR_AF=0.42;LDAF=0.3544;RSQ=0.9585;SNPSOURCE=EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 70219914 rs200703987 T C 100 PASS AA=N;AC=2;AF=0.09;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.06;AVGPOST=0.9091;ERATE=0.0081;EUR_AF=0.15;LDAF=0.1109;RSQ=0.6859;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.750:-0.48,-0.48,-0.48 +16 70287177 rs4081753 A G 100 PASS AA=N;AC=2;AF=0.88;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8794;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 70302201 rs181264712 C G 100 PASS AA=C;AC=1;AF=0.0037;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0037;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 70303580 rs2070203 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.46;AMR_AF=0.42;AN=2;ASN_AF=0.40;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4622;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 70395387 rs1134074 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.40;LDAF=0.2709;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 70422231 rs4985526 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2713;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 70506907 rs7192865 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.73;AMR_AF=0.58;AN=2;ASN_AF=0.68;AVGPOST=0.9936;ERATE=0.0005;EUR_AF=0.50;LDAF=0.6105;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +16 70512405 rs116954857 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9987;ERATE=0.0003;LDAF=0.0100;RSQ=0.9469;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 70515355 rs11054 C T 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.51;AMR_AF=0.39;AN=2;ASN_AF=0.24;AVGPOST=0.9990;ERATE=0.0060;EUR_AF=0.47;LDAF=0.4035;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 70516109 rs12447090 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.03;AMR_AF=0.40;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0095;EUR_AF=0.49;LDAF=0.3429;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 70548297 rs3931036 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9561;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 70690989 rs8046424 G C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.97;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9992;ERATE=0.0012;EUR_AF=0.46;LDAF=0.6543;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 70713654 rs76602679 G C 100 PASS AA=G;AC=2;AF=0.15;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.31;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.06;LDAF=0.1459;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.34,-0.00 +16 70796515 rs2305689 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.46;AMR_AF=0.77;AN=2;ASN_AF=0.58;AVGPOST=0.9980;ERATE=0.0011;EUR_AF=0.66;LDAF=0.6132;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 70796535 rs2305690 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.43;AMR_AF=0.77;AN=2;ASN_AF=0.58;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6032;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 70816893 rs1875941 C T 100 PASS AA=c;AC=2;AF=0.83;AFR_AF=0.89;AMR_AF=0.93;AN=2;ASN_AF=0.69;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.84;LDAF=0.8279;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.80,-0.01 +16 71212979 rs2158102 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4162;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 71218926 rs3785347 T A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.97;AMR_AF=0.74;AN=2;ASN_AF=0.80;AVGPOST=0.9957;ERATE=0.0034;EUR_AF=0.54;LDAF=0.7385;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71318577 rs3803704 T C 100 PASS AA=T;AC=2;AF=0.29;AFR_AF=0.30;AMR_AF=0.45;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2943;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 71319539 rs3826247 C T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.40;AMR_AF=0.65;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5123;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71319646 rs3096380 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.93;AMR_AF=0.92;AN=2;ASN_AF=0.84;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.96;LDAF=0.9179;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71406024 rs7203012 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.39;AMR_AF=0.53;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3961;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71419595 rs4327058 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.73;AMR_AF=0.79;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7130;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71487206 rs2070832 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.94;AMR_AF=0.60;AN=2;ASN_AF=0.30;AVGPOST=0.9914;ERATE=0.0078;EUR_AF=0.69;LDAF=0.6306;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 71509685 rs2288489 C G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.88;AMR_AF=0.75;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7659;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 71509796 rs8050871 C G 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.58;AMR_AF=0.67;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.66;LDAF=0.6284;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 71660115 rs4788820 G C 100 PASS AA=g;AC=2;AF=0.86;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9915;ERATE=0.0009;EUR_AF=0.82;LDAF=0.8612;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +16 71660310 rs4788821 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.24;AMR_AF=0.45;AN=2;ASN_AF=0.72;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.31;LDAF=0.4288;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.43,-0.21,-2.19 +16 71660404 rs61753635 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.21;AMR_AF=0.21;AN=2;ASN_AF=0.08;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2115;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +16 71668634 rs12932850 T G 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.46;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4337;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 71674882 rs2303225 C G 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4208;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 71682796 rs61733125 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1888;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 71682830 rs61733124 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0690;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 71697752 rs1035545 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4399;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 71701248 rs1423983 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.78;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8729;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71718366 rs7195059 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.83;LDAF=0.8816;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71768500 rs2278031 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4433;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 71772795 rs904764 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.86;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8914;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71773190 rs904763 G T 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1842;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 71780485 rs2270832 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4406;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 71780599 rs2270831 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4424;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 71799347 rs12149092 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.36;AMR_AF=0.45;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4021;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 71805160 rs4788443 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9867;ERATE=0.0101;EUR_AF=0.82;LDAF=0.8744;RSQ=0.9608;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 71955400 rs4788450 T G 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.55;AMR_AF=0.63;AN=2;ASN_AF=0.93;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6306;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 72042682 rs3213422 A C 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5705;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +16 72048332 rs3764310 T C 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4191;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 72050885 rs11075914 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 72093119 rs138635822 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0015;RSQ=0.9004;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 72139396 rs150617 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9443;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 72139537 rs42544 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9808;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 72188376 rs117523217 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0151;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 72827758 rs699444 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.83;LDAF=0.9122;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 72828403 rs2229286 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1168;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 72829630 rs12599442 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1079;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 72831652 rs2229290 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1034;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 72832135 rs740178 T A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.80;AN=2;ASN_AF=0.95;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8811;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 72991286 rs2157786 C T 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.49;AMR_AF=0.59;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5507;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 72991660 rs10852515 C G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.74;AMR_AF=0.89;AN=2;ASN_AF=0.68;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.86;LDAF=0.7926;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 72991715 rs4788682 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.73;AMR_AF=0.86;AN=2;ASN_AF=0.66;AVGPOST=0.9455;ERATE=0.0092;EUR_AF=0.83;LDAF=0.7561;RSQ=0.8906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +16 72992221 rs61735550 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.11;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1066;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 72993622 rs62053190 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.04;AN=2;AVGPOST=0.9985;ERATE=0.0015;EUR_AF=0.06;LDAF=0.0416;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 72993706 rs62053191 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0314;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 72993831 rs7193297 A C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.78;AMR_AF=0.32;AN=2;ASN_AF=0.26;AVGPOST=0.9899;ERATE=0.0008;EUR_AF=0.39;LDAF=0.4329;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +16 72993925 rs62053192 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0311;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 74443733 rs201939921 T G 100 PASS AA=N;AC=2;AF=0.65;AFR_AF=0.61;AMR_AF=0.77;AN=2;ASN_AF=0.68;AVGPOST=0.8199;ERATE=0.0312;EUR_AF=0.60;LDAF=0.6243;RSQ=0.6433;SNPSOURCE=EXOME;THETA=0.0211;VT=SNP GT:DS:GL 1|1:1.700:-5.00,-0.93,-0.05 +16 74444838 rs142404156 A G 100 PASS AA=N;AC=1;AF=0.49;AFR_AF=0.44;AMR_AF=0.54;AN=2;ASN_AF=0.47;AVGPOST=0.9218;ERATE=0.0229;EUR_AF=0.53;LDAF=0.4961;RSQ=0.5883;SNPSOURCE=EXOME;THETA=0.0185;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.02,-1.42 +16 74445689 rs200867217 C T 100 PASS AA=-;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.05;AVGPOST=0.8814;ERATE=0.0144;EUR_AF=0.21;LDAF=0.1618;RSQ=0.6133;SNPSOURCE=EXOME;THETA=0.0243;VT=SNP GT:DS:GL 0|1:1.000:-2.97,-0.46,-0.18 +16 74455003 rs112939835 A G 100 PASS AA=N;AC=1;AF=0.52;AFR_AF=0.48;AMR_AF=0.59;AN=2;ASN_AF=0.57;AVGPOST=0.8928;ERATE=0.0093;EUR_AF=0.48;LDAF=0.5176;RSQ=0.8206;SNPSOURCE=EXOME;THETA=0.0200;VT=SNP GT:DS:GL 1|0:1.300:-4.70,-0.62,-0.12 +16 74503860 rs2303278 T A 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.25;AMR_AF=0.33;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2839;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 74504005 rs2303279 T C 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.83;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7255;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 74537591 rs4887772 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.72;AMR_AF=0.66;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7029;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 74664743 rs7193541 T C 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.53;AMR_AF=0.32;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4172;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 74664810 rs7188880 A T 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.83;AMR_AF=0.46;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6302;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 74670458 rs4888262 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.83;AMR_AF=0.45;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6294;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 74695079 rs8058922 G T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.87;AMR_AF=0.72;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0024;EUR_AF=0.66;LDAF=0.7599;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 74712905 rs6564158 A T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.57;AMR_AF=0.65;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6467;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 74750405 rs2301865 G A 100 PASS AA=g;AC=2;AF=0.75;AFR_AF=0.72;AMR_AF=0.81;AN=2;ASN_AF=0.66;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7551;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 74808425 rs929881 G A 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.47;AMR_AF=0.23;AN=2;ASN_AF=0.03;AVGPOST=0.9908;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2593;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.03 +16 74920191 rs14308 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1113;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 74921661 rs9940014 A T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.26;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1683;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0083;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 74999625 rs4887796 A T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.79;AMR_AF=0.55;AN=2;ASN_AF=0.78;AVGPOST=0.9927;ERATE=0.0038;EUR_AF=0.45;LDAF=0.6290;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 75146711 rs34195333 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.11;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.50;LDAF=0.2885;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.94,-0.00,-5.00 +16 75148604 rs755099 G A 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.23;AMR_AF=0.56;AN=2;ASN_AF=0.16;AVGPOST=0.9938;ERATE=0.0004;EUR_AF=0.73;LDAF=0.4352;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.55,-0.01 +16 75204282 rs764551 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.65;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.11;LDAF=0.2461;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 75238103 rs4737 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.58;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8243;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 75258617 rs2287990 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.08;AN=2;ASN_AF=0.27;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1452;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 75269267 rs3169330 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.82;LDAF=0.9127;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.23,-0.00 +16 75269477 rs61729595 A C 100 PASS AA=A;AC=1;AF=0.04;AMR_AF=0.05;AN=2;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0374;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.48,-0.01,-5.00 +16 75269534 rs3743613 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.84;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.32;LDAF=0.4624;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +16 75276775 rs1035539 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.39;AMR_AF=0.73;AN=2;ASN_AF=0.60;AVGPOST=0.9872;ERATE=0.0026;EUR_AF=0.68;LDAF=0.6002;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.81,-0.01,-2.00 +16 75327916 rs2073619 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7628;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 77228629 rs2232503 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9888;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 77228866 rs2232504 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.90;AMR_AF=0.74;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.58;LDAF=0.7484;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 77325325 rs35478105 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.04;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.52;LDAF=0.2732;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 77353973 rs9930984 G T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.75;AMR_AF=0.57;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0027;EUR_AF=0.37;LDAF=0.6168;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 77359919 rs11640912 A T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.15;AMR_AF=0.54;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.36;LDAF=0.4740;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 77389956 rs8059275 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.91;AMR_AF=0.88;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.86;LDAF=0.8807;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 77393207 rs2650907 G C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.49;AMR_AF=0.39;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.4694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 77398081 rs1948719 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.30;AMR_AF=0.30;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0023;EUR_AF=0.47;LDAF=0.3025;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 77401545 rs11643211 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.23;AMR_AF=0.46;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0015;EUR_AF=0.23;LDAF=0.3647;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 77769679 rs17716789 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.15;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1181;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 77775459 rs11648791 G A 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.35;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.60;LDAF=0.4723;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 77850966 rs2966053 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2189;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 77910418 rs3751765 A G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.41;AMR_AF=0.45;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4108;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 78011559 rs3751769 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.10;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1065;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 78198192 rs2303191 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.78;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7865;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 78312489 rs8048830 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.21;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1217;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 78312497 rs8050128 C A 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.51;AMR_AF=0.45;AN=2;ASN_AF=0.46;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.47;LDAF=0.4758;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 78312527 rs77067228 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0604;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 79245465 rs384216 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.34;AMR_AF=0.39;AN=2;ASN_AF=0.11;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.56;LDAF=0.3664;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81010073 rs1127390 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.66;AMR_AF=0.36;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4032;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81050965 rs935939 A T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9845;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81051327 rs935940 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9845;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81056441 rs3743503 T G 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81061827 rs2549887 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.34;AMR_AF=0.64;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5918;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81062171 rs2602428 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.59;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6575;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81066339 rs77874075 T G 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1171;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81076821 rs2278022 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1153;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81077204 rs16954513 T A 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0615;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81077915 rs2257378 T C 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.39;AMR_AF=0.82;AN=2;ASN_AF=0.72;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7111;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81094760 rs804884 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9851;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81094951 rs10459872 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1111;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81095099 rs2287995 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.10;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1147;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81095363 rs804885 C T 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.41;AMR_AF=0.85;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7303;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81124275 rs8177876 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0456;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81204374 rs183882989 G C 100 PASS AA=G;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0023;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81204423 rs11640279 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.28;AMR_AF=0.47;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2889;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81204720 rs35271642 C A 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1924;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81208515 rs12596941 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.32;AVGPOST=0.9936;ERATE=0.0004;EUR_AF=0.24;LDAF=0.2048;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81209207 rs2317114 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.76;AVGPOST=0.9748;ERATE=0.0013;EUR_AF=0.36;LDAF=0.5228;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0156;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81213378 rs4889261 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.71;AMR_AF=0.83;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8400;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81213422 rs4889262 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.65;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.84;LDAF=0.8245;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 81219329 rs9319563 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9490;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +16 81224234 rs12716909 T C 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.55;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8041;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81232275 rs7205673 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.64;AMR_AF=0.78;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8006;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81232564 rs7194871 T G 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.73;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.80;LDAF=0.8236;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81241098 rs11150369 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.47;AMR_AF=0.79;AN=2;ASN_AF=0.86;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7618;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81241100 rs11150370 G C 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.22;AMR_AF=0.48;AN=2;ASN_AF=0.84;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5072;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81241249 rs72831349 T A 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.29;AN=2;ASN_AF=0.0017;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.36;LDAF=0.1926;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81241269 rs4077826 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.0017;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.37;LDAF=0.1955;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81242102 rs6420424 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.48;AMR_AF=0.50;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5850;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81242194 rs6564838 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.57;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7850;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81242198 rs7499011 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.1963;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81248745 rs8060294 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.55;AMR_AF=0.34;AN=2;ASN_AF=0.41;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.31;LDAF=0.3946;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81249927 rs7185774 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.29;AN=2;ASN_AF=0.0035;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.34;LDAF=0.1811;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81249954 rs7191351 T A 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.36;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5172;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81253637 rs9924275 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.49;AMR_AF=0.33;AN=2;ASN_AF=0.40;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3778;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81253642 rs62052455 A T 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=0.9868;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3137;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81253643 rs9933579 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=0.9864;ERATE=0.0005;EUR_AF=0.24;LDAF=0.3136;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81253745 rs9934272 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3235;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81253759 rs9924371 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5709;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81253917 rs9924530 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5726;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81279120 rs28370522 T C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.55;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3848;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81295902 rs7500996 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.20;LDAF=0.2280;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81301694 rs12934922 A T 100 PASS AA=a;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2705;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81303759 rs4889294 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.35;AN=2;ASN_AF=0.14;AVGPOST=0.9991;ERATE=0.0010;EUR_AF=0.45;LDAF=0.2594;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81304069 rs28504508 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.42;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1550;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81819768 rs4586425 T C 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.66;AMR_AF=0.72;AN=2;ASN_AF=0.91;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7463;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81891998 rs4341734 G C 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.54;AMR_AF=0.80;AN=2;ASN_AF=0.72;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.86;LDAF=0.7397;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81892708 rs4888183 T A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.52;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=0.9977;ERATE=0.0011;EUR_AF=0.59;LDAF=0.5774;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81902797 rs12445580 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.36;AMR_AF=0.58;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5178;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81929488 rs1143688 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.12;AMR_AF=0.54;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.38;LDAF=0.4321;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 81939150 rs4435248 G C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.59;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9970;ERATE=0.0029;EUR_AF=0.78;LDAF=0.8031;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +16 81941319 rs1143689 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7957;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81953081 rs12448130 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9876;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81954789 rs12446127 C G 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.22;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.57;LDAF=0.5646;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 81971403 rs1071644 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.10;AMR_AF=0.40;AN=2;ASN_AF=0.41;AVGPOST=0.9972;ERATE=0.0032;EUR_AF=0.49;LDAF=0.3666;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 81973474 rs4405546 C A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0013;EUR_AF=0.92;LDAF=0.9203;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 82033810 rs11542462 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.16;LDAF=0.0724;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 82182286 rs3751863 C G 100 PASS AA=.;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2034;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 82182354 rs3751865 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2024;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 82182866 rs16956533 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2020;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 82203705 rs2303265 A C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.40;AMR_AF=0.79;AN=2;ASN_AF=0.76;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6826;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.84,-0.00 +16 82203711 rs2303264 G T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.62;AMR_AF=0.83;AN=2;ASN_AF=0.76;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7499;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.68,-0.00 +16 82203742 rs1134847 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.40;AMR_AF=0.79;AN=2;ASN_AF=0.76;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.76;LDAF=0.6817;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +16 82203758 rs2303262 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.87;AN=2;ASN_AF=0.84;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8577;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +16 82203768 rs2303261 G T 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.40;AMR_AF=0.79;AN=2;ASN_AF=0.76;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6820;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +16 82203786 rs2303260 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.03;AMR_AF=0.36;AN=2;ASN_AF=0.15;AVGPOST=0.9847;ERATE=0.0010;EUR_AF=0.51;LDAF=0.2827;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +16 83933296 rs446036 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9884;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9579;RSQ=0.9035;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-2.97,-0.46,-0.18 +16 83983071 rs4782865 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.33;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=0.9993;ERATE=0.0010;EUR_AF=0.63;LDAF=0.6094;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 83984776 rs28555129 A C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.73;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9936;ERATE=0.0024;EUR_AF=0.68;LDAF=0.7606;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.91,-0.06 +16 83984844 rs2244899 A C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.83;LDAF=0.9210;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.79,-0.08 +16 83984850 rs2244898 C G 100 PASS AA=g;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.9212;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.01,-0.04 +16 83994540 rs112408286 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0017;RSQ=0.9092;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 83994569 rs2136662 G T 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.84;AMR_AF=0.68;AN=2;ASN_AF=0.83;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.61;LDAF=0.7309;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84067004 rs57576928 C T 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0017;EUR_AF=0.08;LDAF=0.1026;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84070500 rs1317524 C G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.36;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.33;LDAF=0.4406;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84070510 rs1876962 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.37;AN=2;ASN_AF=0.61;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.34;LDAF=0.4471;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84070514 rs1876960 A C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.36;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4422;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84075563 rs1105355 C A 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.69;AMR_AF=0.52;AN=2;ASN_AF=0.65;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.53;LDAF=0.5955;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84093062 rs2280024 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.31;AMR_AF=0.51;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4899;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84099257 rs80053280 A C 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84158248 rs4378600 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2500;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84163126 rs17574602 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84203612 rs17856705 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3643;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84203730 rs9972733 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1000;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +16 84209815 rs2288021 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.26;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1398;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84217062 rs4782591 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +16 84224805 rs8044351 G C 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.89;AMR_AF=0.62;AN=2;ASN_AF=0.60;AVGPOST=0.9958;ERATE=0.0007;EUR_AF=0.61;LDAF=0.6726;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84224967 rs8044695 G A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.85;AMR_AF=0.63;AN=2;ASN_AF=0.70;AVGPOST=0.9828;ERATE=0.0030;EUR_AF=0.65;LDAF=0.7038;RSQ=0.9661;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +16 84228199 rs11864937 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.51;AMR_AF=0.27;AN=2;ASN_AF=0.18;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3141;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84228237 rs11646787 A C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9983;ERATE=0.0009;EUR_AF=0.66;LDAF=0.6448;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.97 +16 84228770 rs11149631 G C 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.47;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3054;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84228873 rs11865115 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=0.9936;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1322;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +16 84229559 rs2303238 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.73;AVGPOST=0.9904;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7979;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84230376 rs2303242 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.93;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5514;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84230500 rs2303243 A C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.60;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3370;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84255809 rs56796255 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1600;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84256410 rs7196482 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.21;AMR_AF=0.17;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.24;LDAF=0.1688;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +16 84328752 rs369797 G T 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9420;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84328756 rs401782 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9406;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84351828 rs187372 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.05;AMR_AF=0.27;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2990;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84402275 rs62048787 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.50;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=0.9139;ERATE=0.0231;EUR_AF=0.27;LDAF=0.3963;RSQ=0.8617;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-2.54 +16 84444349 rs247818 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84449206 rs3826145 T C 100 PASS AA=T;AC=2;AF=0.14;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1415;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84455961 rs2288573 A G 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.65;AMR_AF=0.48;AN=2;ASN_AF=0.23;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4515;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84473137 rs247904 G C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.89;AN=2;ASN_AF=0.94;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.86;LDAF=0.8750;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84476200 rs247897 A T 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.51;AMR_AF=0.36;AN=2;ASN_AF=0.41;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.35;LDAF=0.4021;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84482279 rs62640930 G A 100 PASS AA=G;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0023;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84485573 rs247885 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9974;RSQ=0.8792;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84486700 rs193704 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=0.9925;ERATE=0.0041;EUR_AF=0.45;LDAF=0.5150;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84486867 rs2435172 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9972;RSQ=0.8417;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84492683 rs693552 A C 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.27;AVGPOST=0.9979;ERATE=0.0035;EUR_AF=0.54;LDAF=0.4447;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84494315 rs62050917 C T 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0040;RSQ=0.9656;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84494450 rs381467 G A 100 PASS AA=g;AC=2;AF=0.40;AFR_AF=0.33;AMR_AF=0.46;AN=2;ASN_AF=0.27;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4051;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84495770 rs2241639 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.24;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=0.9980;ERATE=0.0013;EUR_AF=0.32;LDAF=0.2668;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84497186 rs2241634 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.15;AVGPOST=0.9991;ERATE=0.0015;EUR_AF=0.31;LDAF=0.2346;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84514341 rs444170 A G 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3437;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84516309 rs433293 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.19;AMR_AF=0.50;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4109;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84520223 rs431629 A T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.40;AMR_AF=0.60;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5992;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84520325 rs431389 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.40;AMR_AF=0.60;AN=2;ASN_AF=0.90;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5986;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84520396 rs422145 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84520537 rs431818 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84522867 rs422918 C A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.40;AMR_AF=0.59;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5920;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84522897 rs436278 G C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.38;AMR_AF=0.59;AN=2;ASN_AF=0.90;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5848;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 84695280 rs17755815 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.36;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1915;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84695490 rs12928590 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1648;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.58 +16 84778690 rs1812062 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.23;AMR_AF=0.13;AN=2;ASN_AF=0.45;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2407;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-3.18 +16 84778697 rs1812061 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.23;AMR_AF=0.13;AN=2;ASN_AF=0.45;AVGPOST=0.9963;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2405;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +16 84792428 rs7202832 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.32;AMR_AF=0.34;AN=2;ASN_AF=0.08;AVGPOST=0.9948;ERATE=0.0033;EUR_AF=0.51;LDAF=0.3280;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84801751 rs2641688 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.38;LDAF=0.2109;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-3.14,-0.00,-5.00 +16 84879559 rs143154352 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0070;RSQ=0.9684;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:0.850:-0.92,-0.06,-5.00 +16 84882974 rs4783087 C A 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.36;AMR_AF=0.48;AN=2;ASN_AF=0.56;AVGPOST=0.9967;ERATE=0.0081;EUR_AF=0.64;LDAF=0.5317;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84883102 rs8061351 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.31;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9989;ERATE=0.0059;EUR_AF=0.73;LDAF=0.6023;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84888295 rs4782674 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2587;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84888310 rs4782675 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.26;LDAF=0.2706;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 84900472 rs72799566 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0018;EUR_AF=0.09;LDAF=0.0508;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 84922859 rs767050 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.69;AMR_AF=0.56;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.54;LDAF=0.6548;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 85133872 rs3764278 G C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.71;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.15;LDAF=0.3275;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 85704584 rs2303202 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0053;EUR_AF=0.39;LDAF=0.3762;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 85711860 rs1053328 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.25;AMR_AF=0.30;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3604;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 85743732 rs2305357 C G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.72;AMR_AF=0.68;AN=2;ASN_AF=0.88;AVGPOST=0.9868;ERATE=0.0018;EUR_AF=0.66;LDAF=0.7334;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.89,-0.27,-0.34 +16 85813963 rs301165 C T 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9610;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 85838503 rs2599090 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 85838532 rs2733965 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9744;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 85838653 rs2599091 T C 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 85953682 rs16940005 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1358;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 86565826 rs3751803 C G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.90;LDAF=0.8964;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +16 86566039 rs3751801 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.18;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1127;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.01,-1.47 +16 86566042 rs3751800 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.17;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1107;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +16 86575460 rs3213418 C G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.71;AMR_AF=0.89;AN=2;ASN_AF=0.85;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.90;LDAF=0.8408;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 86575737 rs3829533 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.17;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1036;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 86588318 rs200273062 C T 100 PASS AA=C;AC=1;AF=0.0023;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0024;RSQ=0.9722;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87369078 rs12928999 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0475;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87376605 rs2303763 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.34;AMR_AF=0.63;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6030;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +16 87426028 rs8043569 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9815;ERATE=0.0013;EUR_AF=1.00;LDAF=0.9696;RSQ=0.7643;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-3.15,-0.48,-0.18 +16 87436720 rs1054521 G T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.27;AMR_AF=0.85;AN=2;ASN_AF=0.98;AVGPOST=0.9761;ERATE=0.0320;EUR_AF=0.90;LDAF=0.7662;RSQ=0.9685;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87445363 rs1050846 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.26;AN=2;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.44;LDAF=0.2117;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87445839 rs3748400 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.29;AVGPOST=0.9983;ERATE=0.0018;EUR_AF=0.75;LDAF=0.4601;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87446053 rs2042395 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.29;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.75;LDAF=0.4574;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87451273 rs56283442 G T 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.46;AMR_AF=0.07;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1298;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87451358 rs79319720 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0197;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87452403 rs28607955 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.62;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1823;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87452546 rs4240794 C A 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.53;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.96;LDAF=0.8684;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87454310 rs78839939 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0192;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87457526 rs56974220 A G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0489;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87466695 rs80015854 G C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0187;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87678144 rs918368 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.70;AMR_AF=0.66;AN=2;ASN_AF=0.76;AVGPOST=0.9964;ERATE=0.0023;EUR_AF=0.50;LDAF=0.6393;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 87678165 rs3751725 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.20;AN=2;ASN_AF=0.35;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2155;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87678601 rs199967240 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9991;ERATE=0.0004;LDAF=0.0009;RSQ=0.5646;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87723838 rs34767155 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.70;AMR_AF=0.39;AN=2;ASN_AF=0.25;AVGPOST=0.9949;ERATE=0.0026;EUR_AF=0.33;LDAF=0.4028;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +16 87742092 rs2290018 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.30;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=0.9984;ERATE=0.0026;EUR_AF=0.42;LDAF=0.3566;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87748198 rs2081981 G C 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.60;AMR_AF=0.59;AN=2;ASN_AF=0.33;AVGPOST=0.9986;ERATE=0.0029;EUR_AF=0.71;LDAF=0.5670;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 87760337 rs67926154 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.73,-0.00 +16 87782396 rs34779002 C A 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87788756 rs2303770 A G 100 PASS AA=a;AC=1;AF=0.75;AFR_AF=0.93;AMR_AF=0.73;AN=2;ASN_AF=0.83;AVGPOST=0.9990;ERATE=0.0016;EUR_AF=0.59;LDAF=0.7506;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 87795580 rs2303772 G C 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0017;EUR_AF=0.12;LDAF=0.0850;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 87799389 rs79432318 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0157;RSQ=0.9293;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.96,-0.00,-5.00 +16 87960560 rs12922226 A T 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.32;AN=2;ASN_AF=0.03;AVGPOST=0.9974;ERATE=0.0007;EUR_AF=0.50;LDAF=0.3101;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.08,-0.00,-4.00 +16 88017809 rs3815820 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.71;AMR_AF=0.71;AN=2;ASN_AF=0.57;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.61;LDAF=0.6379;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.88,-0.06 +16 88052161 rs7499814 C A 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.35;AMR_AF=0.59;AN=2;ASN_AF=0.48;AVGPOST=0.9914;ERATE=0.0028;EUR_AF=0.80;LDAF=0.5812;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-0.18,-0.47,-2.42 +16 88061150 rs74740586 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.60;AVGPOST=0.9981;ERATE=0.0008;EUR_AF=0.27;LDAF=0.4034;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88552370 rs3751673 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.77;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.35;LDAF=0.5174;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88599659 rs71395304 G T 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.34;AVGPOST=0.9836;ERATE=0.0007;EUR_AF=0.08;LDAF=0.1435;RSQ=0.9533;SNPSOURCE=LOWCOV,EXOME;THETA=0.0097;VT=SNP GT:DS:GL 0|1:1.000:-2.10,-0.00,-3.70 +16 88600079 rs13335396 C G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9075;ERATE=0.0097;EUR_AF=0.98;LDAF=0.8875;RSQ=0.6782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-2.81,-0.45,-0.19 +16 88644005 rs899728 A G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.85;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9040;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88688832 rs3751675 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.39;AMR_AF=0.45;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.51;LDAF=0.4846;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.42,-0.02 +16 88709712 rs7195830 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.88;AMR_AF=0.65;AN=2;ASN_AF=0.77;AVGPOST=0.9892;ERATE=0.0005;EUR_AF=0.62;LDAF=0.7210;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.06,-0.04 +16 88709737 rs1049255 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.44;AVGPOST=0.9372;ERATE=0.0013;EUR_AF=0.49;LDAF=0.4792;RSQ=0.9084;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +16 88709828 rs1049254 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.77;AVGPOST=0.9432;ERATE=0.0056;EUR_AF=0.62;LDAF=0.7020;RSQ=0.8961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.11 +16 88713236 rs4673 A G 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.50;AMR_AF=0.65;AN=2;ASN_AF=0.94;AVGPOST=0.9980;ERATE=0.0056;EUR_AF=0.66;LDAF=0.6973;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88713473 rs4782308 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.47;AMR_AF=0.65;AN=2;ASN_AF=0.90;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.67;LDAF=0.6797;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88714559 rs2306422 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.20;AMR_AF=0.57;AN=2;ASN_AF=0.28;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4317;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88717386 rs8053867 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9958;RSQ=0.8895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +16 88724347 rs2279258 G T 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.30;AMR_AF=0.67;AN=2;ASN_AF=0.61;AVGPOST=0.9850;ERATE=0.0153;EUR_AF=0.65;LDAF=0.5664;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88752693 rs11076698 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.66;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9943;ERATE=0.0028;EUR_AF=0.90;LDAF=0.8637;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +16 88773528 rs11641194 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1290;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88776297 rs4390574 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.82;AMR_AF=0.86;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8670;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 88777995 rs11076704 C T 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.06;AMR_AF=0.23;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2039;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 88778133 rs2879902 C A 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0018;EUR_AF=0.65;LDAF=0.5928;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 88778831 rs7201610 C T 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.06;AMR_AF=0.24;AN=2;ASN_AF=0.02;AVGPOST=0.9941;ERATE=0.0046;EUR_AF=0.44;LDAF=0.2120;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.03 +16 88779739 rs11549837 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.38;AMR_AF=0.40;AN=2;ASN_AF=0.66;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4524;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88779865 rs4782320 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.15;LDAF=0.0700;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88780023 rs1317756 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.11;AMR_AF=0.21;AN=2;ASN_AF=0.08;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.29;LDAF=0.1794;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88780175 rs4782321 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0658;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88780518 rs3826076 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.76;AMR_AF=0.87;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8716;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 88780923 rs8050715 C G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.76;AMR_AF=0.86;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.89;LDAF=0.8701;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 88781073 rs11549835 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0664;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88781125 rs8043637 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.89;AN=2;ASN_AF=0.95;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8798;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +16 88781419 rs2306046 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.83;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8896;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +16 88781614 rs1058158 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1807;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88872145 rs507329 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9135;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 88880811 rs11076715 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.15;AMR_AF=0.25;AN=2;ASN_AF=0.57;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3199;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.94,-0.05 +16 88880844 rs77826920 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0087;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.62 +16 88884466 rs2303271 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.46;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4593;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +16 88891139 rs116993143 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9973;ERATE=0.0012;EUR_AF=0.05;LDAF=0.0543;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88891240 rs2303269 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0526;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88893122 rs150734270 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0024;RSQ=0.9432;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88902183 rs1064315 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.23;AMR_AF=0.25;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.26;LDAF=0.3386;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88902276 rs12934499 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3076;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 88926026 rs3826063 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88943700 rs140777536 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0163;RSQ=0.9743;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.67,-0.10 +16 88958282 rs3743541 C G 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.55;AMR_AF=0.24;AN=2;ASN_AF=0.47;AVGPOST=0.9857;ERATE=0.0173;EUR_AF=0.20;LDAF=0.3552;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 88968048 rs76033980 T C 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.07;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0338;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89167140 rs7201122 G C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=0.67;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.93;LDAF=0.8567;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89167395 rs6500526 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.77;LDAF=0.6508;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89167404 rs7193255 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.48;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.77;LDAF=0.6501;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89167431 rs6500527 G C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.56;AMR_AF=0.77;AN=2;ASN_AF=0.47;AVGPOST=0.9916;ERATE=0.0102;EUR_AF=0.76;LDAF=0.6382;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89167443 rs6500528 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.57;AMR_AF=0.78;AN=2;ASN_AF=0.48;AVGPOST=0.9966;ERATE=0.0016;EUR_AF=0.77;LDAF=0.6490;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89167458 rs6500529 C A 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0013;EUR_AF=0.77;LDAF=0.6517;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89167792 rs8060043 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.58;AMR_AF=0.77;AN=2;ASN_AF=0.48;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.73;LDAF=0.6373;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +16 89168981 rs4782457 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.56;AMR_AF=0.78;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6449;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89169205 rs4782456 C G 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.56;AMR_AF=0.78;AN=2;ASN_AF=0.48;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6487;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89180844 rs150487794 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 89180883 rs3743979 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.60;AMR_AF=0.76;AN=2;ASN_AF=0.45;AVGPOST=0.9885;ERATE=0.0087;EUR_AF=0.73;LDAF=0.6306;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89180935 rs3743980 G T 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.49;AMR_AF=0.75;AN=2;ASN_AF=0.34;AVGPOST=0.9981;ERATE=0.0015;EUR_AF=0.70;LDAF=0.5679;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89199651 rs12447947 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.05;AMR_AF=0.31;AN=2;ASN_AF=0.01;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.34;LDAF=0.1843;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89238190 rs12927793 G A 100 PASS AA=g;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.43;AN=2;ASN_AF=0.02;AVGPOST=0.9575;ERATE=0.0006;EUR_AF=0.58;LDAF=0.3190;RSQ=0.9377;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.69,-0.10 +16 89246670 rs59865771 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.29;AMR_AF=0.26;AN=2;ASN_AF=0.80;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4209;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 89251776 rs58079876 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.19;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1673;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.98,-0.38,-0.32 +16 89258747 rs75791347 A C 100 PASS AA=c;AC=1;AF=0.46;AFR_AF=0.35;AMR_AF=0.35;AN=2;ASN_AF=0.65;AVGPOST=0.9700;ERATE=0.0026;EUR_AF=0.45;LDAF=0.4644;RSQ=0.9555;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.66,-4.70 +16 89259993 rs3815615 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.33;AMR_AF=0.35;AN=2;ASN_AF=0.81;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5082;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +16 89291948 rs12926996 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.54;AMR_AF=0.91;AN=2;ASN_AF=0.91;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8321;RSQ=0.9940;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89291951 rs12926997 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.54;AMR_AF=0.91;AN=2;ASN_AF=0.91;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8314;RSQ=0.9935;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89293271 rs28417933 A C 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.31;AMR_AF=0.86;AN=2;ASN_AF=0.58;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.85;LDAF=0.6614;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89293614 rs4785626 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.54;AMR_AF=0.91;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8337;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89294184 rs4785627 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.54;AMR_AF=0.91;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8327;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89294381 rs28415940 T C 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.54;AMR_AF=0.87;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7545;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89294439 rs9921361 G T 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7537;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89294511 rs28638280 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.54;AMR_AF=0.91;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8327;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89294697 rs60437616 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.54;AMR_AF=0.87;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7541;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89350038 rs2279348 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.65;AMR_AF=0.65;AN=2;ASN_AF=0.22;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.67;LDAF=0.5436;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89350178 rs2279349 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.87;AMR_AF=0.77;AN=2;ASN_AF=0.67;AVGPOST=0.9991;ERATE=0.0007;EUR_AF=0.81;LDAF=0.7813;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89592690 rs3935626 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1115;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89613037 rs462464 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.22;AMR_AF=0.16;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.20;LDAF=0.1892;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89613123 rs2292954 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1183;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89617064 rs3794632 G C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.26;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1755;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89620328 rs12960 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.13;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1175;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89623405 rs61747711 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0161;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 89627460 rs2280370 T G 100 PASS AA=N;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.14;AN=2;ASN_AF=0.15;AVGPOST=0.9941;ERATE=0.0008;EUR_AF=0.17;LDAF=0.1932;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.24 +16 89627671 rs174035 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.13;AN=2;ASN_AF=0.14;AVGPOST=0.9882;ERATE=0.0013;EUR_AF=0.19;LDAF=0.1555;RSQ=0.9654;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.25,-0.40,-1.51 +16 89645437 rs369230 G T 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.45;AMR_AF=0.71;AN=2;ASN_AF=0.48;AVGPOST=0.9953;ERATE=0.0005;EUR_AF=0.69;LDAF=0.5856;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.53,-0.01 +16 89653032 rs452176 G A 100 PASS AA=g;AC=1;AF=0.46;AFR_AF=0.24;AMR_AF=0.65;AN=2;ASN_AF=0.37;AVGPOST=0.9941;ERATE=0.0033;EUR_AF=0.59;LDAF=0.4626;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 89712889 rs460879 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.29;AMR_AF=0.41;AN=2;ASN_AF=0.53;AVGPOST=0.9952;ERATE=0.0013;EUR_AF=0.49;LDAF=0.4436;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +16 89758973 rs187282 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +16 89760552 rs460057 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9813;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89774411 rs11860230 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9723;RSQ=0.9827;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +16 89777761 rs12920315 C T 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.45;AMR_AF=0.62;AN=2;ASN_AF=0.48;AVGPOST=0.9721;ERATE=0.0059;EUR_AF=0.58;LDAF=0.5317;RSQ=0.9608;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-2.69,-0.00,-5.00 +16 89782989 rs7206570 A G 100 PASS AA=g;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.97;AN=2;ASN_AF=0.80;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9137;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 89783187 rs4785706 C T 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9762;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +16 89790167 rs4785590 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.01;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.39;LDAF=0.1880;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.22,-0.00,-5.00 +16 89805261 rs1800359 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.98;AMR_AF=0.74;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.8167;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 89831510 rs2159116 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0993;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 89833576 rs17233141 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 89849480 rs2239359 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.68;AMR_AF=0.54;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0022;EUR_AF=0.42;LDAF=0.6059;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 89869761 rs1800286 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.96;AMR_AF=0.71;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.8066;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 89883007 rs1800282 A T 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=0.9825;ERATE=0.0010;EUR_AF=0.10;LDAF=0.0540;RSQ=0.8763;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.89,-0.46,-0.19 +16 89925556 rs7200842 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.63;AMR_AF=0.65;AN=2;ASN_AF=0.77;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.56;LDAF=0.6453;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 90102835 rs868045 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.39;AMR_AF=0.28;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0027;EUR_AF=0.37;LDAF=0.2663;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 90108832 rs2241035 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.27;AMR_AF=0.51;AN=2;ASN_AF=0.30;AVGPOST=0.9981;ERATE=0.0135;EUR_AF=0.63;LDAF=0.4449;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +16 90109711 rs3743825 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.98;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.74;LDAF=0.8268;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 90127080 rs3826200 C T 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.66;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.11;LDAF=0.2925;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 90129970 rs4493039 C A 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.77;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3455;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 90130136 rs2078478 C T 100 PASS AA=.;AC=1;AF=0.33;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3346;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +16 90141355 rs12925933 A C 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.13;AMR_AF=0.59;AN=2;ASN_AF=0.20;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4069;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +16 90141477 rs7196459 T G 100 PASS AA=.;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9684;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 22368862 rs1835183 G A 100 PASS AA=.;AC=1;AF=0.60;AFR_AF=0.43;AMR_AF=0.69;AN=2;ASN_AF=0.60;AVGPOST=0.9936;ERATE=0.0082;EUR_AF=0.68;LDAF=0.6036;RSQ=0.9862;SNPSOURCE=EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22368905 rs1835182 G A 100 PASS AA=.;AC=1;AF=0.57;AFR_AF=0.40;AMR_AF=0.69;AN=2;ASN_AF=0.51;AVGPOST=0.9924;ERATE=0.0136;EUR_AF=0.67;LDAF=0.5725;RSQ=0.9844;SNPSOURCE=EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22369248 rs491208 T C 100 PASS AA=.;AC=2;AF=0.85;AFR_AF=0.68;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=0.9680;ERATE=0.0231;EUR_AF=0.88;LDAF=0.8457;RSQ=0.9171;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +15 22369426 rs4087943 G A 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.44;AMR_AF=0.63;AN=2;ASN_AF=0.44;AVGPOST=0.9866;ERATE=0.0123;EUR_AF=0.54;LDAF=0.5078;RSQ=0.9712;SNPSOURCE=EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22382655 rs535034 A C 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.34;AMR_AF=0.24;AN=2;ASN_AF=0.21;AVGPOST=0.9736;ERATE=0.0066;EUR_AF=0.25;LDAF=0.2586;RSQ=0.9412;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.02,-1.36 +15 22382897 rs62006710 A G 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.20;AVGPOST=0.9968;ERATE=0.0016;EUR_AF=0.28;LDAF=0.1760;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 22383189 rs1820851 G A 100 PASS AA=.;AC=1;AF=0.45;AFR_AF=0.29;AMR_AF=0.58;AN=2;ASN_AF=0.49;AVGPOST=0.9961;ERATE=0.0056;EUR_AF=0.47;LDAF=0.4526;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22833520 rs4778301 G T 100 PASS AA=.;AC=1;AF=0.06;AFR_AF=0.18;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.0026;LDAF=0.0583;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 22862890 rs58637805 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.18;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0594;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 22925851 rs4134802 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.37;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.21;LDAF=0.1844;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22925929 rs200867346 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22928533 rs12148589 G C 100 PASS AA=-;AC=1;AF=0.18;AFR_AF=0.39;AMR_AF=0.15;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1819;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 22928537 rs79791617 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.29;LDAF=0.2446;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22929905 rs2305094 C G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.47;AMR_AF=0.52;AN=2;ASN_AF=0.34;AVGPOST=0.9781;ERATE=0.0121;EUR_AF=0.43;LDAF=0.4321;RSQ=0.9683;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 22929906 rs2305093 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.94;AMR_AF=0.83;AN=2;ASN_AF=0.86;AVGPOST=0.9842;ERATE=0.0034;EUR_AF=0.69;LDAF=0.8108;RSQ=0.9685;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 22933528 rs2084063 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2496;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22933691 rs1109036 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2496;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22939192 rs11633474 G A 100 PASS AA=g;AC=2;AF=0.37;AFR_AF=0.36;AMR_AF=0.48;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3719;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 22960868 rs2289818 G C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.61;AMR_AF=0.51;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4524;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22960938 rs2289819 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2006;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 22969232 rs7170637 G A 100 PASS AA=A;AC=2;AF=0.24;AFR_AF=0.69;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9983;ERATE=0.0069;EUR_AF=0.18;LDAF=0.2437;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 23000272 rs999842 A G 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.38;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0015;EUR_AF=0.57;LDAF=0.5361;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 23052632 rs11263683 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.47;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=0.71;LDAF=0.6951;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 23931507 rs2192206 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.01;AMR_AF=0.29;AN=2;ASN_AF=0.34;AVGPOST=0.9937;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2118;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 24921771 rs1563102 G C 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.02;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9980;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2919;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 24922230 rs3742950 C G 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.88;AMR_AF=0.35;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.38;LDAF=0.5046;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 25601030 rs79328837 A G 100 PASS AA=A;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0037;RSQ=0.9785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 25925094 rs3816800 C G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.51;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4428;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 25926179 rs2076744 C T 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.49;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2914;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 25926186 rs2076743 G A 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.79;AMR_AF=0.71;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 25939950 rs75410367 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0063;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 25961964 rs10873607 A G 100 PASS AA=G;AC=1;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 25967085 rs1564828 T C 100 PASS AA=T;AC=1;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 25981177 rs72625120 C A 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1803;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 26026139 rs8038726 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.83;AMR_AF=0.85;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8033;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 27017536 rs55694247 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.29;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1951;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.24 +15 27018797 rs20318 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.01;AMR_AF=0.30;AN=2;ASN_AF=0.33;AVGPOST=0.9929;ERATE=0.0010;EUR_AF=0.19;LDAF=0.2045;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-2.13,-0.00,-3.66 +15 27182357 rs140682 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.84;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9930;ERATE=0.0006;EUR_AF=0.53;LDAF=0.6464;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 27188353 rs140684 C A 100 PASS AA=-;AC=1;AF=0.67;AFR_AF=0.43;AMR_AF=0.79;AN=2;ASN_AF=0.52;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.88;LDAF=0.6708;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.14,-0.48,-0.18 +15 27188459 rs140685 C T 100 PASS AA=-;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.48;AN=2;ASN_AF=0.32;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4474;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 27572192 rs140672 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.35;AMR_AF=0.05;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1074;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 27573968 rs140674 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.41;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1240;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 27772676 rs140679 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.30;AMR_AF=0.66;AN=2;ASN_AF=0.69;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5442;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 27777856 rs35534092 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.12;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0293;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 28090173 rs12592307 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2980;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 28096538 rs1800419 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.60;AMR_AF=0.38;AN=2;ASN_AF=0.42;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4513;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +15 28116275 rs7175046 G C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.96;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8565;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28200408 rs7170989 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.31;AMR_AF=0.55;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.75;LDAF=0.4495;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28211921 rs1800411 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.20;AMR_AF=0.48;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.3944;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28228644 rs12910433 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.11;AMR_AF=0.47;AN=2;ASN_AF=0.12;AVGPOST=0.9987;ERATE=0.0013;EUR_AF=0.68;LDAF=0.3682;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28231793 rs10852218 T C 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.42;AMR_AF=0.74;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7628;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28235773 rs1800404 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.12;AMR_AF=0.62;AN=2;ASN_AF=0.42;AVGPOST=0.9994;ERATE=0.0009;EUR_AF=0.79;LDAF=0.5135;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28357230 rs4778245 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9601;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28359744 rs7495441 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.38;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8396;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28361764 rs4778247 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.38;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8399;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28377772 rs8025035 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.32;AMR_AF=0.86;AN=2;ASN_AF=0.58;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.92;LDAF=0.6872;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 28414665 rs7494786 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.69;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.9926;ERATE=0.0047;EUR_AF=0.98;LDAF=0.9134;RSQ=0.9744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +15 28502279 rs11631797 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.18;AMR_AF=0.61;AN=2;ASN_AF=0.26;AVGPOST=0.9880;ERATE=0.0088;EUR_AF=0.80;LDAF=0.4905;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.39,-0.02 +15 30008856 rs7166878 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 30008889 rs2229518 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.65;AMR_AF=0.83;AN=2;ASN_AF=0.88;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7954;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 30018553 rs4073316 A T 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.55;AMR_AF=0.81;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.82;LDAF=0.7705;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 30018627 rs7179270 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.11;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1099;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 30020106 rs11073221 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.11;LDAF=0.1106;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 30026582 rs2229517 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0075;RSQ=0.9573;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 30663407 rs149768281 C T 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=0.8764;ERATE=0.0138;EUR_AF=0.21;LDAF=0.2238;RSQ=0.6449;SNPSOURCE=EXOME;THETA=0.0141;VT=SNP GT:DS:GL 1|0:0.700:-1.03,-0.04,-5.00 +15 31197564 rs4779794 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.06;AMR_AF=0.43;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4511;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +15 31218164 rs2959037 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.65;AMR_AF=0.72;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7368;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 31229420 rs2955795 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.12;AMR_AF=0.45;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4891;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 31239316 rs202108717 G A 100 PASS AA=g;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 31244263 rs2955789 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.81;LDAF=0.8268;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 31245880 rs1404467 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.48;AMR_AF=0.65;AN=2;ASN_AF=0.89;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7121;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.19,-0.00 +15 31251366 rs2949573 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.17;AMR_AF=0.46;AN=2;ASN_AF=0.87;AVGPOST=0.9978;ERATE=0.0026;EUR_AF=0.46;LDAF=0.5023;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.88,-0.00 +15 31267147 rs1133642 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.87;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5056;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 31330280 rs2288242 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.58;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8107;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 31342744 rs1035705 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.20;AMR_AF=0.58;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5608;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 31362352 rs2241493 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.74;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8308;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 31369123 rs4779816 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8761;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 31862448 rs1459198 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.92;AMR_AF=0.61;AN=2;ASN_AF=0.92;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7174;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 32450828 rs201953202 C T 100 PASS AA=c;AC=1;AF=0.32;AFR_AF=0.20;AMR_AF=0.32;AN=2;ASN_AF=0.27;AVGPOST=0.8511;ERATE=0.0061;EUR_AF=0.42;LDAF=0.3273;RSQ=0.7266;SNPSOURCE=EXOME;THETA=0.0064;VT=SNP GT:DS:GL 0|1:0.750:-0.48,-0.48,-0.48 +15 33096451 rs145907477 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0061;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 33357262 rs2306277 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.39;AMR_AF=0.59;AN=2;ASN_AF=0.22;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4398;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 33359370 rs11072170 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.17;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2826;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 33359574 rs11858145 C A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.60;AMR_AF=0.78;AN=2;ASN_AF=0.85;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7108;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 33765761 rs2245508 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.87;AMR_AF=0.61;AN=2;ASN_AF=0.53;AVGPOST=0.9972;ERATE=0.0017;EUR_AF=0.59;LDAF=0.6439;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 33840414 rs1435100 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=0.52;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8022;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +15 33872177 rs674155 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.46;AMR_AF=0.75;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6289;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 33893769 rs2437135 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.63;LDAF=0.7289;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 33895613 rs2291729 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1459;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 33905410 rs2229116 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2178;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 33916053 rs2229117 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0965;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 33928785 rs35203574 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.05;AVGPOST=0.9992;ERATE=0.0018;EUR_AF=0.14;LDAF=0.1371;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 33951910 rs2279662 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2303;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 33954652 rs4780144 C T 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.57;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8556;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 33990041 rs3736531 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.20;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1458;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 33993320 rs2280419 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.44;AMR_AF=0.32;AN=2;ASN_AF=0.36;AVGPOST=0.9948;ERATE=0.0013;EUR_AF=0.28;LDAF=0.3428;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 34014913 rs2293028 C T 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.38;AMR_AF=0.32;AN=2;ASN_AF=0.58;AVGPOST=0.9801;ERATE=0.0089;EUR_AF=0.23;LDAF=0.3709;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0136;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34016274 rs6495228 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.82;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8835;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34021276 rs7498093 T G 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.31;AMR_AF=0.53;AN=2;ASN_AF=0.28;AVGPOST=0.9944;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3894;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34034529 rs138414127 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 34103272 rs4780181 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9967;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8453;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34113010 rs2288613 C T 100 PASS AA=c;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4071;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 34113054 rs3815965 G A 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.85;AMR_AF=0.71;AN=2;ASN_AF=0.75;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7146;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 34113536 rs2288614 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.85;AMR_AF=0.70;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7093;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 34113592 rs2288615 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2290;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 34133130 rs3764232 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.77;AMR_AF=0.58;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5370;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34137200 rs41279228 T G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1219;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 34137292 rs12899715 C G 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.23;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9990;ERATE=0.0010;EUR_AF=0.73;LDAF=0.5158;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 34146922 rs713203 C T 100 PASS AA=T;AC=1;AF=0.88;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8794;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 34152777 rs2303310 T A 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.14;AMR_AF=0.67;AN=2;ASN_AF=0.42;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5209;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 34156312 rs11072760 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.26;AMR_AF=0.68;AN=2;ASN_AF=0.42;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.77;LDAF=0.5497;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 34156425 rs2303311 C A 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0046;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 34354951 rs75917306 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0283;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 34528948 rs4577050 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.42;AMR_AF=0.64;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6060;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34543055 rs10851964 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.42;AMR_AF=0.64;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6070;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34640218 rs374230 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.57;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.8955;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34640378 rs430083 T C 100 PASS AA=t;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9607;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0097;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 34648935 rs57115249 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0022;EUR_AF=0.05;LDAF=0.1316;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 34649631 rs2279685 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.06;LDAF=0.1353;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 34673722 rs76522922 C T 100 PASS AA=c;AC=1;AF=0.49;AFR_AF=0.25;AMR_AF=0.50;AN=2;ASN_AF=0.60;AVGPOST=0.9356;ERATE=0.0232;EUR_AF=0.57;LDAF=0.4889;RSQ=0.8749;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.54 +15 35045057 rs3743123 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.27;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2875;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 35045312 rs651724 T A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.56;AMR_AF=0.58;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5699;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 35149008 rs8035240 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9840;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 35196492 rs12898639 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.37;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.75;LDAF=0.6012;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 35207397 rs2044920 C G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.81;AMR_AF=0.69;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7591;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 35207430 rs2044921 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.06;AN=2;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0431;RSQ=0.9574;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +15 35273620 rs4923849 C T 100 PASS AA=t;AC=1;AF=0.46;AFR_AF=0.87;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4569;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 35665765 rs10519996 G C 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0377;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 36937405 rs11073191 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.96;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9679;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +15 36984409 rs3743338 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.42;AMR_AF=0.73;AN=2;ASN_AF=0.63;AVGPOST=0.9786;ERATE=0.0023;EUR_AF=0.59;LDAF=0.5840;RSQ=0.9692;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 38233869 rs2937991 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9663;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 38235521 rs12443282 T A 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.23;AMR_AF=0.31;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2189;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 38614525 rs7182445 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.71;AMR_AF=0.82;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8208;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 38631930 rs7180446 C A 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.71;AMR_AF=0.82;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8203;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 38643574 rs3751526 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.71;AMR_AF=0.82;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8208;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 38988760 rs7171233 T A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2025;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 38988815 rs7165988 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2015;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 38990769 rs7172816 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.48;AMR_AF=0.28;AN=2;ASN_AF=0.44;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.23;LDAF=0.3500;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 39879517 rs2664141 C T 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.69;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.28;LDAF=0.3862;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 39882178 rs2228262 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0531;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 39885301 rs2228263 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.24;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1314;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 39910431 rs10152640 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.70;AMR_AF=0.29;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3990;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40030440 rs1906163 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.66;AMR_AF=0.39;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4657;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40062838 rs7179838 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.22;AMR_AF=0.47;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3659;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40062855 rs1565561 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.23;AMR_AF=0.47;AN=2;ASN_AF=0.25;AVGPOST=0.9877;ERATE=0.0118;EUR_AF=0.49;LDAF=0.3687;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40226495 rs566792 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9884;ERATE=0.0004;EUR_AF=0.88;LDAF=0.9392;RSQ=0.9252;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +15 40265799 rs2307105 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.90;AMR_AF=0.77;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8609;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40269052 rs34298786 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.37;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2959;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40282625 rs4144472 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9607;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40300214 rs2279580 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.39;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3423;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 40300443 rs2279579 T G 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.21;AMR_AF=0.36;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2893;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40313083 rs12916520 G T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.87;AMR_AF=0.91;AN=2;ASN_AF=0.70;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8575;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40313141 rs3207297 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.28;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3077;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40322552 rs2250402 G T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.93;AMR_AF=0.94;AN=2;ASN_AF=0.80;AVGPOST=0.9978;ERATE=0.0029;EUR_AF=0.92;LDAF=0.8943;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +15 40324481 rs4432245 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.26;AMR_AF=0.21;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2290;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 40327290 rs4594236 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.28;AMR_AF=0.21;AN=2;ASN_AF=0.45;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2343;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 40327301 rs2898985 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.45;AMR_AF=0.23;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2739;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 40328575 rs7535 G C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.87;AMR_AF=0.93;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8798;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.44,-0.00 +15 40328665 rs8208 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.29;AMR_AF=0.56;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.4835;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40330564 rs7321 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.91;AMR_AF=0.91;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8773;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40330629 rs8041057 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.28;AMR_AF=0.58;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.4836;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40453497 rs2277560 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3442;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.88,-0.00 +15 40477831 rs1801376 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.83;AMR_AF=0.61;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40488851 rs1047130 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.32;LDAF=0.2134;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40491952 rs2172742 A G 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3602;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40500986 rs76932264 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.26;AMR_AF=0.46;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4035;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40558002 rs3743132 A G 100 PASS AA=a;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1313;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.79 +15 40558064 rs2412504 A G 100 PASS AA=N;AC=1;AF=0.16;AFR_AF=0.32;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1582;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40558482 rs3743135 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.33;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1611;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40565055 rs2253603 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.13;AMR_AF=0.70;AN=2;ASN_AF=0.29;AVGPOST=0.9952;ERATE=0.0006;EUR_AF=0.70;LDAF=0.4620;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40581164 rs3743138 C A 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.19;AVGPOST=0.9948;ERATE=0.0010;EUR_AF=0.31;LDAF=0.2083;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.12,-0.62 +15 40581543 rs936212 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.58;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1744;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40583458 rs936209 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=0.91;AVGPOST=0.9947;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9350;RSQ=0.9680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +15 40583560 rs62021888 G T 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=0.9486;ERATE=0.0045;EUR_AF=0.31;LDAF=0.1971;RSQ=0.8777;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.850:-2.42,-0.01,-1.69 +15 40583876 rs9972418 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9967;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9660;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.91,-0.01 +15 40589002 rs2229691 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.13;AMR_AF=0.42;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3593;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40589830 rs2305649 G A 100 PASS AA=g;AC=1;AF=0.69;AFR_AF=0.84;AMR_AF=0.63;AN=2;ASN_AF=0.84;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.50;LDAF=0.6863;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40590134 rs2229690 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.84;AMR_AF=0.63;AN=2;ASN_AF=0.84;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.49;LDAF=0.6817;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40633138 rs4924455 A T 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.62;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.09;LDAF=0.2355;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.05 +15 40650664 rs183775254 T C 100 PASS AA=t;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=0.9932;ERATE=0.0006;LDAF=0.0285;RSQ=0.9221;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +15 40655845 rs1898883 C G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.70;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7322;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40655873 rs1898882 G C 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.62;AMR_AF=0.58;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.43;LDAF=0.6066;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40656141 rs12443160 T C 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2474;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40661013 rs61734053 G T 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0287;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 40661746 rs2412512 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0330;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40662501 rs4514650 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.55;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.10;LDAF=0.2526;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40683780 rs2289332 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.56;AMR_AF=0.64;AN=2;ASN_AF=0.69;AVGPOST=0.9985;ERATE=0.0013;EUR_AF=0.58;LDAF=0.6175;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 40750740 rs3743143 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0453;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40751555 rs3803357 C A 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.83;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.50;LDAF=0.6753;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 40752134 rs3743144 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0480;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 40849408 rs8028999 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.37;AMR_AF=0.31;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3569;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40856989 rs3803354 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.75;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8780;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 40917613 rs74377704 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.09;AVGPOST=0.9989;ERATE=0.0003;LDAF=0.0299;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 40998342 rs45457497 T G 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.28;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3476;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41047024 rs7169010 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.55;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9616;ERATE=0.0066;EUR_AF=0.52;LDAF=0.6306;RSQ=0.9424;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.13,-0.03 +15 41104874 rs17657877 G C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.40;AMR_AF=0.30;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3473;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 41105658 rs3736286 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.16;AMR_AF=0.27;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.38;LDAF=0.2798;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.05,-0.97 +15 41105926 rs690347 T G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8162;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41146581 rs3736287 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.65;AMR_AF=0.83;AN=2;ASN_AF=0.70;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7407;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41148199 rs659232 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.76;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8642;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41149161 rs690458 G C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8636;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41165739 rs1814692 A C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.78;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8023;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41276158 rs11855248 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.39;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3871;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 41313064 rs3214068 C G 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.41;AMR_AF=0.41;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3922;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 41346092 rs2899010 T C 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.56;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8903;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41476101 rs521088 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41476209 rs522063 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8190;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41476465 rs690733 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.84;AMR_AF=0.41;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4799;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 41483636 rs2412609 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9809;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41483682 rs1971131 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.58;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2975;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 41508037 rs8025916 A G 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.48;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2011;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 41509288 rs7173086 T A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.86;AMR_AF=0.41;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4808;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 41797296 rs2278659 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.01;AMR_AF=0.28;AN=2;ASN_AF=0.62;AVGPOST=0.9993;ERATE=0.0014;EUR_AF=0.07;LDAF=0.2336;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0115;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +15 41805115 rs2253936 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.68;AMR_AF=0.50;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4807;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41815516 rs8027526 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9831;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41816190 rs2297378 T G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.36;AVGPOST=0.9985;ERATE=0.0066;EUR_AF=0.54;LDAF=0.5326;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41817367 rs2274858 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.70;AMR_AF=0.57;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5311;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +15 41819283 rs2297379 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.22;AMR_AF=0.48;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3327;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41819716 rs1200345 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.65;AMR_AF=0.56;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5096;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 41821752 rs1200349 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.66;AMR_AF=0.56;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5128;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.56,-0.01 +15 41857303 rs2277536 T C 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.22;AMR_AF=0.40;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2679;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42109223 rs1197689 T C 100 PASS AA=c;AC=1;AF=0.73;AFR_AF=0.95;AMR_AF=0.81;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7275;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42109975 rs2303518 T G 100 PASS AA=g;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.41;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2939;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42114414 rs2303517 C T 100 PASS AA=.;AC=1;AF=0.60;AFR_AF=0.52;AMR_AF=0.76;AN=2;ASN_AF=0.28;AVGPOST=0.9973;ERATE=0.0138;EUR_AF=0.83;LDAF=0.6052;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42115426 rs1197688 A G 100 PASS AA=.;AC=1;AF=0.73;AFR_AF=0.96;AMR_AF=0.81;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.86;LDAF=0.7297;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42115747 rs3959569 G C 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.04;AMR_AF=0.39;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.36;LDAF=0.2399;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42127443 rs2241523 G C 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.52;AMR_AF=0.58;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4813;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +15 42129158 rs890505 G A 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.06;AMR_AF=0.39;AN=2;ASN_AF=0.17;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2499;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42129176 rs890504 T C 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.52;AMR_AF=0.58;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.55;LDAF=0.4812;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42129373 rs11547012 C G 100 PASS AA=.;AC=1;AF=0.47;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.55;LDAF=0.4676;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42133502 rs11635415 T C 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.06;AMR_AF=0.39;AN=2;ASN_AF=0.17;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2502;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42134097 rs3816533 C T 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.69;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.13;LDAF=0.2646;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.36 +15 42134371 rs1648834 G C 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7683;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42134523 rs1648833 C T 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7683;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42134839 rs1672465 T C 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.61;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.82;LDAF=0.7855;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +15 42135988 rs1672466 C T 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7683;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42137282 rs1648829 G A 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.52;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7636;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.99,-0.00 +15 42139038 rs890508 G A 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.51;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7628;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42139642 rs883329 C T 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.68;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2677;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42362298 rs12906547 T G 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.44;AN=2;ASN_AF=0.39;AVGPOST=0.9944;ERATE=0.0016;EUR_AF=0.35;LDAF=0.3257;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.26,-0.00,-2.82 +15 42363769 rs1668589 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.54;AMR_AF=0.81;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0023;EUR_AF=0.77;LDAF=0.6733;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42371752 rs4924618 A T 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.14;AMR_AF=0.44;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3253;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42373810 rs11635685 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.44;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3263;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42375978 rs12442923 C T 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0351;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42377744 rs605253 C G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.59;AMR_AF=0.81;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6914;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42434254 rs655427 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=0.9978;ERATE=0.0032;EUR_AF=0.55;LDAF=0.4316;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42434336 rs75560163 G C 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0302;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42434837 rs1356410 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.86;AMR_AF=0.72;AN=2;ASN_AF=0.88;AVGPOST=0.9956;ERATE=0.0463;EUR_AF=0.69;LDAF=0.7829;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42436599 rs636535 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.93;AMR_AF=0.59;AN=2;ASN_AF=0.37;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6494;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42439376 rs4923929 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.57;AMR_AF=0.43;AN=2;ASN_AF=0.23;AVGPOST=0.9889;ERATE=0.0274;EUR_AF=0.48;LDAF=0.4286;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42446362 rs677895 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0745;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42446398 rs677845 G A 100 PASS AA=g;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0603;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42448659 rs636604 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.16;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0843;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.18,-0.46,-2.49 +15 42454701 rs1712390 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.22;AMR_AF=0.14;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1001;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42458347 rs663454 T C 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1339;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42459034 rs1619030 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.67;AMR_AF=0.44;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3077;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42483769 rs647581 C G 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1499;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42483779 rs660033 C T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1499;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42519136 rs1678988 T C 100 PASS AA=T;AC=1;AF=0.91;AFR_AF=0.82;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9132;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42564369 rs4244587 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.28;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9793;ERATE=0.0345;EUR_AF=0.75;LDAF=0.6278;RSQ=0.9725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +15 42564370 rs4244588 A G 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.73;AMR_AF=0.93;AN=2;ASN_AF=0.83;AVGPOST=0.9815;ERATE=0.0319;EUR_AF=0.87;LDAF=0.8397;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +15 42565588 rs2277533 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.32;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.13;LDAF=0.1642;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 42568547 rs8043515 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9675;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42568630 rs8023678 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.77;AMR_AF=0.99;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9300;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42570718 rs8024732 A G 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.38;AMR_AF=0.68;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7335;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42579948 rs8037627 T C 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.68;AMR_AF=0.98;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9081;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42584909 rs4923939 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9624;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42603083 rs2412694 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.98;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9139;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 42740285 rs146381257 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0113;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 42820451 rs9302112 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.08;AMR_AF=0.57;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.78;LDAF=0.5915;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43028683 rs12441516 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9940;ERATE=0.0008;EUR_AF=0.0013;LDAF=0.0083;RSQ=0.7078;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.700:-0.48,-0.48,-0.48 +15 43170793 rs6493068 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.95;AMR_AF=0.33;AN=2;ASN_AF=0.42;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.29;LDAF=0.4786;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43170823 rs16957250 C T 100 PASS AA=C;AC=2;AF=0.11;AFR_AF=0.0041;AMR_AF=0.15;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1086;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43531411 rs28756768 G C 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.55;AMR_AF=0.16;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2491;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43545728 rs555001 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.75;AMR_AF=0.33;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4497;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43571390 rs567357 C G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.96;AMR_AF=0.36;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4995;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43579566 rs513970 A G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.96;AMR_AF=0.36;AN=2;ASN_AF=0.43;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.5022;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.66,-0.01 +15 43621947 rs3742969 A G 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.70;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.3633;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43627855 rs1549525 A G 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.69;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.3624;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43632549 rs2278857 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.92;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.32;LDAF=0.5052;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43654182 rs6493085 C T 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.64;AMR_AF=0.22;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.3479;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43659046 rs2278860 A G 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.69;AMR_AF=0.22;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.3588;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43661802 rs3809482 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.96;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.5123;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43678543 rs113157089 G A 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.94;AMR_AF=0.34;AN=2;ASN_AF=0.48;AVGPOST=0.9720;ERATE=0.0101;EUR_AF=0.29;LDAF=0.4910;RSQ=0.9664;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43690215 rs999026 T C 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.65;AMR_AF=0.25;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3584;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43720197 rs550239 C T 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.73;AMR_AF=0.22;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.10;LDAF=0.3497;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43724646 rs2602141 T G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.93;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4876;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43748304 rs690367 A G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.96;AMR_AF=0.35;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4950;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43762196 rs689647 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.73;AMR_AF=0.22;AN=2;ASN_AF=0.45;AVGPOST=0.9985;ERATE=0.0026;EUR_AF=0.10;LDAF=0.3519;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43767774 rs560191 G C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.96;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4940;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43784000 rs555252 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9671;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 43784475 rs2439831 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.68;AMR_AF=0.21;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.10;LDAF=0.3373;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43816917 rs1060939 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.96;AMR_AF=0.35;AN=2;ASN_AF=0.47;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4979;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43817406 rs480108 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.96;AMR_AF=0.35;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4985;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43818052 rs2245715 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.67;AMR_AF=0.21;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.3415;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43891512 rs76542740 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.54;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.09;LDAF=0.2672;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.39,-0.23 +15 43892893 rs12437957 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.34;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=0.9629;ERATE=0.0187;EUR_AF=0.05;LDAF=0.1625;RSQ=0.9262;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:0.550:-0.26,-0.35,-5.00 +15 43893072 rs3097773 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.74;AMR_AF=0.22;AN=2;ASN_AF=0.48;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.09;LDAF=0.3604;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43895642 rs28495368 G A 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.39;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=0.9921;ERATE=0.0043;EUR_AF=0.08;LDAF=0.2160;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43895643 rs2260160 C T 100 PASS AA=N;AC=1;AF=0.27;AFR_AF=0.56;AMR_AF=0.19;AN=2;ASN_AF=0.33;AVGPOST=0.9933;ERATE=0.0056;EUR_AF=0.08;LDAF=0.2733;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43897499 rs2920780 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.54;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9919;ERATE=0.0008;EUR_AF=0.09;LDAF=0.2684;RSQ=0.9853;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.050:-2.25,-0.42,-0.21 +15 43939642 rs8042868 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.28;AMR_AF=0.19;AN=2;ASN_AF=0.32;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2071;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 43988604 rs28578041 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.18;AN=2;ASN_AF=0.31;AVGPOST=0.9939;ERATE=0.0010;EUR_AF=0.09;LDAF=0.2144;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 44038899 rs2411284 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.18;AMR_AF=0.68;AN=2;ASN_AF=0.63;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5682;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 44053617 rs8040336 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.05;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.53;LDAF=0.3950;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 44061802 rs1053492 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.08;AMR_AF=0.67;AN=2;ASN_AF=0.58;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5290;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 44068160 rs3844075 C G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.64;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8806;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 44069069 rs2277531 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.34;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9923;ERATE=0.0098;EUR_AF=0.11;LDAF=0.2295;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 44093927 rs12702 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.19;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2121;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 44102010 rs2228368 A C 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2048;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 44120559 rs678084 T G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.71;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8467;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 44151063 rs13329084 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1202;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 44198049 rs2306674 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.42;AMR_AF=0.15;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2162;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 44778936 rs2453275 T A 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.76;AMR_AF=0.62;AN=2;ASN_AF=0.65;AVGPOST=0.9595;ERATE=0.0572;EUR_AF=0.51;LDAF=0.6268;RSQ=0.9423;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 44943757 rs3759871 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.52;AMR_AF=0.57;AN=2;ASN_AF=0.49;AVGPOST=0.9991;ERATE=0.0010;EUR_AF=0.44;LDAF=0.4926;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45059390 rs6493127 C T 100 PASS AA=T;AC=1;AF=0.94;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.96;LDAF=0.9409;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45060014 rs3100143 A T 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.74;AMR_AF=0.86;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8383;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45249121 rs11638723 C G 100 PASS AA=-;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0156;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 45258358 rs77861669 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0159;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.05,-0.93 +15 45353230 rs2854446 C T 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.81;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=0.9955;ERATE=0.0005;EUR_AF=0.89;LDAF=0.8812;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.38 +15 45361180 rs55739437 A T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.58;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=0.9538;ERATE=0.0246;EUR_AF=0.11;LDAF=0.2349;RSQ=0.9209;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.65,-4.40 +15 45361285 rs55881086 A G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=0.9694;ERATE=0.0147;EUR_AF=0.02;LDAF=0.0388;RSQ=0.6855;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:0.800:-0.48,-0.48,-0.48 +15 45364534 rs930337 A C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.40;AMR_AF=0.85;AN=2;ASN_AF=0.81;AVGPOST=0.8666;ERATE=0.0611;EUR_AF=0.81;LDAF=0.7040;RSQ=0.8052;SNPSOURCE=EXOME;THETA=0.0078;VT=SNP GT:DS:GL 1|1:1.850:-5.00,-0.63,-0.12 +15 45365724 rs76283634 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.61;AMR_AF=0.25;AN=2;ASN_AF=0.19;AVGPOST=0.9792;ERATE=0.0045;EUR_AF=0.20;LDAF=0.3010;RSQ=0.9643;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.55 +15 45365762 rs78724098 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.71;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=0.9806;ERATE=0.0058;EUR_AF=0.22;LDAF=0.3391;RSQ=0.9710;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.10 +15 45391566 rs269869 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45392075 rs269868 G A 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.19;AMR_AF=0.85;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7556;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45392390 rs112598817 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 45397831 rs73406330 G A 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.37;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1408;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 45398438 rs57659670 T C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.40;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1499;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 45400358 rs269860 C G 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.57;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8834;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45402940 rs269859 A G 100 PASS AA=.;AC=1;AF=0.74;AFR_AF=0.17;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9983;ERATE=0.0032;EUR_AF=0.92;LDAF=0.7428;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45404066 rs2001616 G A 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.39;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=0.9981;ERATE=0.0013;EUR_AF=0.92;LDAF=0.7807;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45406854 rs4775766 C T 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0042;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 45407967 rs28559568 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.04;AN=2;ASN_AF=0.07;AVGPOST=0.9981;ERATE=0.0043;EUR_AF=0.01;LDAF=0.0498;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 45408414 rs2576090 C G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.56;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=1.00;LDAF=0.8935;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45408691 rs2576091 C G 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.39;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7997;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45408699 rs2252371 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.13;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=0.9959;ERATE=0.0018;EUR_AF=0.91;LDAF=0.7129;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45408710 rs2554459 A G 100 PASS AA=a;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9399;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45408933 rs2576092 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.40;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8017;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +15 45409271 rs955152 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.13;AMR_AF=0.83;AN=2;ASN_AF=0.86;AVGPOST=0.9964;ERATE=0.0005;EUR_AF=0.91;LDAF=0.7114;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45409472 rs4774518 C T 100 PASS AA=c;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.05;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0225;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.80 +15 45433646 rs1648283 T G 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.41;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3076;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45457106 rs12438755 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2756;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45457127 rs7169193 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.77;AMR_AF=0.63;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6906;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45467540 rs1632144 C G 100 PASS AA=G;AC=1;AF=0.93;AFR_AF=0.98;AMR_AF=0.97;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9286;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45470350 rs199616306 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 45491082 rs80131405 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0901;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 45654327 rs1145086 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.92;AMR_AF=0.59;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.6878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45661678 rs1288775 T A 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.86;AMR_AF=0.51;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.5970;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45669055 rs12437840 C A 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4593;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +15 45694579 rs1820518 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4594;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45694610 rs1365610 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.27;LDAF=0.4607;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45695382 rs7182723 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.85;AVGPOST=0.9901;ERATE=0.0009;EUR_AF=0.27;LDAF=0.4605;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +15 45695695 rs1153849 G A 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.86;AMR_AF=0.51;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.5959;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45706739 rs12440038 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4588;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45779810 rs2453531 G A 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.90;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7505;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 45968435 rs1044032 T C 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0024;EUR_AF=0.21;LDAF=0.2491;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45968535 rs12914266 A C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.74;AMR_AF=0.65;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7643;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 45974628 rs2289578 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.10;AMR_AF=0.15;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2149;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +15 48063076 rs568215 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.97;AMR_AF=0.67;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7738;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 48426484 rs1426654 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.92;AMR_AF=0.33;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.5215;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48441554 rs36075490 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.15;AMR_AF=0.10;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0690;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 48443699 rs2470103 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48460786 rs11070626 T C 100 PASS AA=T;AC=1;AF=0.91;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9104;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 48460927 rs8023906 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48522730 rs145745760 A T 100 PASS AA=A;AC=2;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48559801 rs141858745 C T 100 PASS AA=c;AC=2;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0078;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48580713 rs1552311 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.95,-0.00 +15 48726933 rs3825962 C G 100 PASS AA=C;AC=2;AF=0.09;AFR_AF=0.07;AMR_AF=0.05;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0910;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48779402 rs11853943 C T 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.15;AMR_AF=0.15;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2071;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48779530 rs140598 G C 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0772;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48789634 rs140605 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.63;AMR_AF=0.22;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3652;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48797307 rs25458 A G 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.51;AMR_AF=0.17;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2911;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48807637 rs4775765 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 48812828 rs55699652 T C 100 PASS AA=T;AC=2;AF=0.08;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0777;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 49044538 rs2306187 C G 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.60;AMR_AF=0.19;AN=2;ASN_AF=0.44;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.11;LDAF=0.3184;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 49059673 rs9302144 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.05;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0718;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 49083577 rs58156069 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.42;AN=2;ASN_AF=0.32;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.45;LDAF=0.3766;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 49097734 rs72739872 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.35;AMR_AF=0.33;AN=2;ASN_AF=0.31;AVGPOST=0.9575;ERATE=0.0609;EUR_AF=0.33;LDAF=0.3316;RSQ=0.8954;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:0.950:-1.17,-0.03,-5.00 +15 49148356 rs16961733 C A 100 PASS AA=c;AC=1;AF=0.20;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2006;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 49285001 rs34895054 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 49325289 rs11638215 A C 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.67;LDAF=0.4506;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 49429410 rs17473148 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1120;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 49620200 rs1055254 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.27;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.25;LDAF=0.1989;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 49867323 rs12902107 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.60;AMR_AF=0.79;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7585;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 49917341 rs3210227 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1363;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 50152583 rs4774549 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 50158695 rs11630021 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.26;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1956;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 50189448 rs2413976 C A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.42;AMR_AF=0.36;AN=2;ASN_AF=0.08;AVGPOST=0.9971;ERATE=0.0023;EUR_AF=0.51;LDAF=0.3514;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0092;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 50226313 rs2452524 G T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.87;AMR_AF=0.63;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6582;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 50489677 rs1863511 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 50773755 rs3131561 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9908;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 50867082 rs473357 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.71;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5982;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 50878630 rs8042919 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0704;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 50885976 rs567109 G T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.58;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5686;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 50888568 rs543821 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0704;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 50888619 rs675011 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9944;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +15 50941108 rs2063011 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9733;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 51204364 rs1147129 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5219;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 51207818 rs2663553 G C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.58;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5243;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 51217361 rs2306331 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.43;AMR_AF=0.38;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4781;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 51294832 rs3825798 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2418;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 51502986 rs10046 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4112;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 51510702 rs1143704 T A 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.18;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4086;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.68,-0.01,-5.00 +15 51510868 rs4324076 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4104;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 51514572 rs28757184 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0265;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 51529112 rs700518 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3693;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 51634255 rs2446421 T G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.89;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9962;ERATE=0.0006;EUR_AF=0.47;LDAF=0.6095;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 51669682 rs200838713 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0007;RSQ=0.7653;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 51675625 rs2445738 C T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.92;AMR_AF=0.46;AN=2;ASN_AF=0.48;AVGPOST=0.9982;ERATE=0.0074;EUR_AF=0.39;LDAF=0.5443;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 51914778 rs6493514 T G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.88;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8660;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.83,-0.01 +15 52252799 rs2258248 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.81;AMR_AF=0.66;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.7262;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 52254682 rs116808659 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0128;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52404862 rs2231292 A C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.84;AMR_AF=0.49;AN=2;ASN_AF=0.41;AVGPOST=0.9940;ERATE=0.0010;EUR_AF=0.33;LDAF=0.4931;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.45,-0.19 +15 52404934 rs4776003 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9825;ERATE=0.0013;EUR_AF=0.16;LDAF=0.2159;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.24,-0.01,-2.03 +15 52414926 rs150604724 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +15 52420491 rs12909161 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1293;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52503895 rs34276836 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.20;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1788;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52510669 rs3751609 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.16;AMR_AF=0.13;AN=2;ASN_AF=0.43;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1883;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 52513494 rs78101707 T G 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.22 +15 52515727 rs143143252 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0147;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52517221 rs116883163 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0144;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52517737 rs11070887 A C 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.40;AMR_AF=0.16;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2737;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 52517751 rs75580489 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0146;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52539673 rs10163109 C T 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.70;AMR_AF=0.90;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8780;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 52545702 rs74455958 C T 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0920;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52556429 rs4776032 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9780;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 52587880 rs12907067 C T 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.16;AMR_AF=0.59;AN=2;ASN_AF=0.09;AVGPOST=0.9898;ERATE=0.0009;EUR_AF=0.74;LDAF=0.4165;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-2.12,-0.00,-3.62 +15 52611451 rs2290332 A G 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.28;AMR_AF=0.24;AN=2;ASN_AF=0.54;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2871;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 52667552 rs2414145 G A 100 PASS AA=g;AC=2;AF=0.87;AFR_AF=0.52;AMR_AF=0.97;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8743;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 52675261 rs4774621 T C 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.52;AMR_AF=0.97;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8747;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 52681573 rs1724623 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9954;ERATE=0.0026;EUR_AF=1.00;LDAF=0.9676;RSQ=0.9597;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 52689526 rs2924130 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9683;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 52689631 rs1724577 T G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.68;AMR_AF=0.97;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9154;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 52897478 rs2414163 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.23;AMR_AF=0.63;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.75;LDAF=0.4470;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52901283 rs61731670 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.32;AMR_AF=0.24;AN=2;ASN_AF=0.74;AVGPOST=0.9793;ERATE=0.0171;EUR_AF=0.12;LDAF=0.3477;RSQ=0.9743;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 52901284 rs58018557 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.51;AMR_AF=0.25;AN=2;ASN_AF=0.78;AVGPOST=0.9827;ERATE=0.0201;EUR_AF=0.13;LDAF=0.4038;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 52901433 rs12915981 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.30;AMR_AF=0.63;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.75;LDAF=0.4622;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52901638 rs3751614 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.23;AMR_AF=0.62;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.4460;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 52901977 rs2414166 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.23;AMR_AF=0.62;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.4469;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 53907948 rs17730281 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2792;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 53994493 rs6416452 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.74;AMR_AF=0.62;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6527;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 53998314 rs690235 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 54008795 rs690337 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.68;AMR_AF=0.73;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7248;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 54008845 rs690346 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9621;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 54306925 rs12437941 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 54557517 rs79567943 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0366;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 54786879 rs78088948 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0516;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 54841874 rs9302181 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.14;AMR_AF=0.29;AN=2;ASN_AF=0.54;AVGPOST=0.9940;ERATE=0.0056;EUR_AF=0.38;LDAF=0.3532;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 54847677 rs11639005 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.44;LDAF=0.3948;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 54915975 rs2414332 A T 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.40;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.65;LDAF=0.5946;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 54919047 rs1520411 A G 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.30;AMR_AF=0.58;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5740;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 55710369 rs6493785 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9960;RSQ=0.9444;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 55759193 rs600753 T C 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.29;AMR_AF=0.64;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0012;EUR_AF=0.50;LDAF=0.5325;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +15 55921013 rs7165971 T C 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.03;AMR_AF=0.40;AN=2;ASN_AF=0.97;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4320;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 55965521 rs28556884 T C 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.60;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.25;LDAF=0.3262;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 55965917 rs187589950 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0012;RSQ=0.7910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56122664 rs12910830 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3624;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56125182 rs8026172 T A 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3236;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56130286 rs11071227 A T 100 PASS AA=a;AC=1;AF=0.92;AFR_AF=0.86;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.94;LDAF=0.9215;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56139153 rs2288346 T C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.85;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8981;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56140995 rs12232351 T A 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2930;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56152598 rs4774228 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9831;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 56152729 rs2303579 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.63;AMR_AF=0.69;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6760;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56152872 rs2303580 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.63;AMR_AF=0.69;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6755;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56161919 rs1912402 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3142;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56207983 rs7174459 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2038;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 56243766 rs61732704 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0546;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 56704682 rs12441309 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0361;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56719785 rs795784 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1810;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 56719797 rs795785 G T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9360;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 56721264 rs795787 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +15 56721406 rs808730 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +15 56735824 rs17819473 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56739063 rs17238740 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0366;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56739177 rs77189834 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0366;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56923714 rs8043381 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 56959028 rs28620278 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.75;AMR_AF=0.59;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.5032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 56981703 rs1871861 T A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=0.9362;ERATE=0.0548;EUR_AF=0.93;LDAF=0.9043;RSQ=0.7081;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +15 57490034 rs17819994 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 57524982 rs12442879 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0444;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 57731335 rs1280395 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 57731728 rs1280396 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.88;AMR_AF=0.88;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8497;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 57753867 rs1511951 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.15;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1380;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 57835868 rs1620315 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.48;AMR_AF=0.28;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2532;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 57835903 rs1620402 T G 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.48;AMR_AF=0.29;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2665;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 57836823 rs8029295 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.73,-0.01 +15 57838258 rs2635390 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.56;AMR_AF=0.70;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6594;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +15 57918069 rs2069133 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.56;AMR_AF=0.56;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.40;LDAF=0.4954;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 57918090 rs2958059 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 57967219 rs1991252 T C 100 PASS AA=t;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 57976583 rs2554032 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 58000981 rs1062707 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.28;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.76;LDAF=0.5561;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +15 58471368 rs2249783 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.73;AMR_AF=0.94;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8684;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 58476281 rs1867380 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.74;AMR_AF=0.94;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8766;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 58833938 rs6076 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.26;AMR_AF=0.33;AN=2;ASN_AF=0.79;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.18;LDAF=0.3850;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 58834741 rs690 G T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.46;AN=2;ASN_AF=0.23;AVGPOST=0.9966;ERATE=0.0053;EUR_AF=0.56;LDAF=0.4484;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0364;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 58837910 rs2414592 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0057;EUR_AF=1.00;LDAF=0.9408;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 58837957 rs6082 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0053;EUR_AF=0.06;LDAF=0.1933;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 58838010 rs6083 A G 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.69;AMR_AF=0.48;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.38;LDAF=0.5879;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 58853079 rs3829462 C A 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9296;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 58853109 rs3829461 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9296;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 58853218 rs55913623 C T 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9296;RSQ=0.9997;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 58913643 rs116923065 T A 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0251;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 59064041 rs202092838 A G 100 PASS AA=A;AC=1;AF=0.0014;AFR_AF=0.0041;AMR_AF=0.0028;AN=2;AVGPOST=0.9991;ERATE=0.0005;LDAF=0.0017;RSQ=0.7557;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +15 59144199 rs16940850 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.29;AMR_AF=0.60;AN=2;ASN_AF=0.42;AVGPOST=0.9984;ERATE=0.0007;EUR_AF=0.66;LDAF=0.5048;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 59323048 rs2899642 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.46;LDAF=0.2576;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 59347929 rs1446239 C A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.66;AMR_AF=0.47;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.4511;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 59368167 rs7178935 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.66;AMR_AF=0.41;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.4282;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 59499179 rs3809530 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.28;AMR_AF=0.34;AN=2;ASN_AF=0.58;AVGPOST=0.9948;ERATE=0.0025;EUR_AF=0.27;LDAF=0.3624;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 59499228 rs3809529 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.44;AMR_AF=0.40;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.34;LDAF=0.4506;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 59499274 rs3809528 C A 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.49;AMR_AF=0.40;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.34;LDAF=0.4616;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 59500116 rs3825937 T C 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.35;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0019;EUR_AF=0.27;LDAF=0.3633;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 59510189 rs2230155 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.41;AMR_AF=0.50;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4931;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 59515434 rs2306779 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.22;AMR_AF=0.49;AN=2;ASN_AF=0.29;AVGPOST=0.9892;ERATE=0.0108;EUR_AF=0.62;LDAF=0.4257;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 59548475 rs4508371 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9780;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 59784493 rs4296198 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.70;AMR_AF=0.87;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.81;LDAF=0.7957;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 59813464 rs143217762 G A 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0028;RSQ=0.8856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 59964798 rs4774342 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9876;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 60648214 rs12898604 T C 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.89;AMR_AF=0.88;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7491;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 60678298 rs11855679 T A 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8295;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 60678328 rs11858864 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8295;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +15 60690089 rs12904657 A G 100 PASS AA=g;AC=1;AF=0.80;AFR_AF=0.80;AMR_AF=0.75;AN=2;ASN_AF=0.94;AVGPOST=0.9925;ERATE=0.0009;EUR_AF=0.71;LDAF=0.7949;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.94,-0.05 +15 60715800 rs1046657 T G 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.32;AMR_AF=0.66;AN=2;ASN_AF=0.94;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6058;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 60724118 rs12437617 C G 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.33;AMR_AF=0.73;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6841;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 60734697 rs1063100 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.25;AMR_AF=0.64;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5835;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 60742063 rs1869484 G T 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.25;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.57;LDAF=0.5810;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 60789798 rs11071539 G T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9575;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 62164267 rs145106201 A C 100 PASS AA=A;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 62167897 rs12708469 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.47;AMR_AF=0.62;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5293;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 62169232 rs149307561 T C 100 PASS AA=T;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 62202482 rs10851704 C T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.49;AMR_AF=0.64;AN=2;ASN_AF=0.49;AVGPOST=0.9916;ERATE=0.0085;EUR_AF=0.56;LDAF=0.5403;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 62223273 rs9788670 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5489;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 62232796 rs7172838 C T 100 PASS AA=c;AC=1;AF=0.55;AFR_AF=0.50;AMR_AF=0.63;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5476;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 62327127 rs2414758 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.51;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=0.9873;ERATE=0.0231;EUR_AF=0.56;LDAF=0.5491;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 62967395 rs1878784 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.58;AMR_AF=0.97;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8871;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 62967554 rs1878783 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9405;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 62979016 rs12917611 A C 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.59;AMR_AF=0.96;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8674;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 62990916 rs12906130 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.22;AMR_AF=0.34;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3697;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 62990971 rs12905981 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.60;AVGPOST=0.9891;ERATE=0.0108;EUR_AF=0.30;LDAF=0.3604;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 62994428 rs12594220 G C 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.48;AMR_AF=0.97;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8528;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +15 62994928 rs12908653 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3944;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 63009733 rs938983 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.47;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8140;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.04,-0.00 +15 63009804 rs1320191 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.31;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.88;LDAF=0.7723;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.07,-0.04 +15 63014548 rs10775181 A G 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.60;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=0.9978;ERATE=0.0086;EUR_AF=0.96;LDAF=0.8721;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +15 63030398 rs12900862 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9831;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 63044637 rs7176359 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.59;AMR_AF=0.82;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0025;EUR_AF=0.80;LDAF=0.7324;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 63047778 rs8033767 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.41;AMR_AF=0.80;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0022;EUR_AF=0.77;LDAF=0.6585;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 63047793 rs4775538 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.14;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0034;EUR_AF=0.19;LDAF=0.2228;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63054439 rs2030040 C G 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.46;AMR_AF=0.65;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5918;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 63351840 rs1071646 C A 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6966;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 63414083 rs34317102 A C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.62;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9883;ERATE=0.0014;EUR_AF=0.73;LDAF=0.7807;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +15 63419699 rs34536322 A C 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0223;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63433766 rs2729835 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.55;AMR_AF=0.57;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7011;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 63569902 rs117618017 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.10;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0631;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63597857 rs1047552 T G 100 PASS AA=T;AC=2;AF=0.10;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1015;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 63907940 rs7178853 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.21;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1106;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63922752 rs10851731 T A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.88;AMR_AF=0.69;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.89;LDAF=0.6481;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63937209 rs2229749 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.88;AMR_AF=0.69;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.6490;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63937657 rs8029051 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.19;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0805;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63953153 rs2272209 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.89;AMR_AF=0.69;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0002;EUR_AF=0.89;LDAF=0.6468;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63954029 rs2228511 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.89;AMR_AF=0.69;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.89;LDAF=0.6471;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 63988357 rs63019465 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.88;AMR_AF=0.69;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.6467;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 64011104 rs7176133 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2103;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 64020073 rs9920746 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9828;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 64367745 rs332233 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.51;AMR_AF=0.32;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2819;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 64367775 rs332234 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9287;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.03,-0.00 +15 64385851 rs332259 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9278;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 64410484 rs2290117 G T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.54;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.82;LDAF=0.7282;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 64418397 rs1130603 G A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.47;AMR_AF=0.67;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7175;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 64428657 rs2290122 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.53;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7262;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 64448365 rs2253557 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.78;AMR_AF=0.93;AN=2;ASN_AF=0.95;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9019;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 64508763 rs6494466 G A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.95;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3780;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 64706259 rs2046356 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.33;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.90;LDAF=0.7824;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 64737225 rs7167612 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.64;AMR_AF=0.94;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.8876;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 64915106 rs525878 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9817;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65041622 rs6494493 C A 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.32;AMR_AF=0.89;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.90;LDAF=0.7838;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65113493 rs1872592 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.36;AMR_AF=0.69;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6216;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65114833 rs35204896 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0397;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65235776 rs34988193 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.32;LDAF=0.2187;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65236875 rs2414865 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.76;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4909;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65273399 rs4776659 T C 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.35;AMR_AF=0.65;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6193;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 65315961 rs4776661 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.14;AMR_AF=0.51;AN=2;ASN_AF=0.72;AVGPOST=0.9958;ERATE=0.0051;EUR_AF=0.44;LDAF=0.4564;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 65347405 rs2232762 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.18;AMR_AF=0.51;AN=2;ASN_AF=0.78;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4732;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 65350743 rs2232759 C G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3198;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65350968 rs2232758 T A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3195;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65369531 rs2946642 G T 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.50;AMR_AF=0.52;AN=2;ASN_AF=0.72;AVGPOST=0.9432;ERATE=0.0055;EUR_AF=0.39;LDAF=0.5219;RSQ=0.9154;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.42,-0.21,-2.19 +15 65369951 rs2919359 A G 100 PASS AA=g;AC=2;AF=0.89;AFR_AF=0.91;AMR_AF=0.84;AN=2;ASN_AF=0.98;AVGPOST=0.9915;ERATE=0.0009;EUR_AF=0.84;LDAF=0.8886;RSQ=0.9622;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +15 65370353 rs2919360 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9900;RSQ=0.9537;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +15 65449169 rs2946670 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65489128 rs938952 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.58;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8061;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65489688 rs2679117 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65490901 rs2679118 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65494212 rs2073711 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.65;AMR_AF=0.61;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5143;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65495820 rs2072048 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.70;AMR_AF=0.62;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5461;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65495827 rs2073707 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.65;AMR_AF=0.61;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5292;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65496587 rs2585034 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.54;AMR_AF=0.59;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5004;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65497849 rs2681038 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.70;AMR_AF=0.62;AN=2;ASN_AF=0.23;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5477;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +15 65553246 rs2304896 C T 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.27;AMR_AF=0.34;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2568;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65621857 rs509652 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9707;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65667724 rs666623 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.94;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8929;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 65739303 rs11009 C A 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0507;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65772698 rs352461 T C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.34;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1115;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65856653 rs11539008 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1156;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65863917 rs2279854 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0476;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65871698 rs11484 G T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.33;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1083;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65917355 rs35571449 T G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0477;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 65936883 rs62014370 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0481;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 66031024 rs10519304 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0524;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 66170080 rs74845010 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0443;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 66206204 rs3803414 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0585;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 66214785 rs11637551 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0443;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.19 +15 66215138 rs11637615 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0457;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 66257408 rs333550 T C 100 PASS AA=t;AC=2;AF=0.91;AFR_AF=0.87;AMR_AF=0.96;AN=2;ASN_AF=0.94;AVGPOST=0.9560;ERATE=0.0403;EUR_AF=0.90;LDAF=0.9078;RSQ=0.7941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.83,-0.07 +15 66274690 rs551474 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9638;RSQ=0.9719;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.82,-0.07 +15 66386798 rs17819714 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0072;RSQ=0.9550;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +15 66386853 rs7168565 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.28;AMR_AF=0.48;AN=2;ASN_AF=0.29;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.59;LDAF=0.4241;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +15 66629403 rs3759786 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.0919;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 66641732 rs2063690 G C 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1654;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 66644521 rs9806123 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9877;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 66644563 rs9806130 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2605;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 66806308 rs4238406 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9982;RSQ=0.9638;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 67457335 rs1065080 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.87;AMR_AF=0.89;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8527;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 67501033 rs2289262 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2623;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 67501782 rs28693872 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.35;AMR_AF=0.30;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3017;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 67528374 rs7173826 T G 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.05;AMR_AF=0.38;AN=2;ASN_AF=0.63;AVGPOST=0.9959;ERATE=0.0013;EUR_AF=0.34;LDAF=0.3551;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 67547301 rs3743347 C A 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.44;AVGPOST=0.9923;ERATE=0.0030;EUR_AF=0.22;LDAF=0.2541;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +15 67555487 rs62014646 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0073;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 67692502 rs7495023 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 67768151 rs3985641 G C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 67985931 rs8034680 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9987;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 68121483 rs7183168 A C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.72;AMR_AF=0.71;AN=2;ASN_AF=0.95;AVGPOST=0.9961;ERATE=0.0008;EUR_AF=0.59;LDAF=0.7300;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-0.89,-0.39,-0.33 +15 68124665 rs72751453 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2166;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 68445912 rs11633620 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9940;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 68492028 rs11071986 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.45;AMR_AF=0.42;AN=2;ASN_AF=0.14;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4027;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 68583175 rs6494729 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 68603625 rs898591 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9838;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.30,-0.00 +15 68618961 rs2271722 T C 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.21;AMR_AF=0.79;AN=2;ASN_AF=0.83;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.81;LDAF=0.6750;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +15 68624175 rs7167822 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.20;AMR_AF=0.77;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6559;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 68624396 rs7168069 A C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8825;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +15 68624641 rs6494733 A C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.84;LDAF=0.8823;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.64,-0.00 +15 68628143 rs2306023 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.22;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.79;LDAF=0.6716;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.39,-0.00 +15 69238445 rs3743093 G A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.63;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5590;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 69561518 rs3865014 G A 100 PASS AA=g;AC=2;AF=0.70;AFR_AF=0.48;AMR_AF=0.77;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.76;LDAF=0.6961;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 69709686 rs3759825 G A 100 PASS AA=g;AC=2;AF=0.85;AFR_AF=0.66;AMR_AF=0.89;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8478;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 69715488 rs7180624 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0014;EUR_AF=1.00;LDAF=0.9875;RSQ=0.9399;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 69728949 rs3825858 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.59;AMR_AF=0.84;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.7815;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 69732736 rs937724 C T 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.59;AMR_AF=0.84;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.7819;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 69747675 rs1463911 A T 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0011;EUR_AF=1.00;LDAF=0.9830;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 70345626 rs1057865 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.46;AN=2;ASN_AF=0.25;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.47;LDAF=0.3546;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 70346923 rs2228178 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.46;AN=2;ASN_AF=0.25;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3530;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 70351788 rs2133977 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.51;AMR_AF=0.82;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.80;LDAF=0.7107;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 70368432 rs2291986 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.18;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2274;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 70952463 rs117136117 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0101;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 70960068 rs934005 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.32;AMR_AF=0.73;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5961;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 70964274 rs62016910 T G 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0414;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 70975092 rs62016913 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0177;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 70991925 rs4776525 G C 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.64;AMR_AF=0.86;AN=2;ASN_AF=0.55;AVGPOST=0.9994;ERATE=0.0049;EUR_AF=0.88;LDAF=0.7371;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 70994283 rs6494889 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.50;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1906;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 71125093 rs3825970 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.30;AMR_AF=0.72;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5178;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 71125204 rs1549317 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.39;AMR_AF=0.73;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.59;LDAF=0.5396;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 71175296 rs1528828 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9863;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 71184278 rs2959174 G T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.75;AMR_AF=0.31;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5188;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 71184495 rs2955035 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.73;AMR_AF=0.32;AN=2;ASN_AF=0.60;AVGPOST=0.9937;ERATE=0.0014;EUR_AF=0.41;LDAF=0.5133;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +15 71507764 rs12324441 G C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.17;AN=2;AVGPOST=0.9930;ERATE=0.0005;EUR_AF=0.23;LDAF=0.1742;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:0.850:-2.32,-0.01,-2.03 +15 71535458 rs12440013 G C 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.58;AN=2;ASN_AF=0.72;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5536;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 71548937 rs4777350 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.23;AMR_AF=0.31;AN=2;ASN_AF=0.28;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3184;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 71953045 rs62024298 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3661;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 72023422 rs2277540 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.10;AMR_AF=0.68;AN=2;ASN_AF=0.77;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5719;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 72037610 rs2291994 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.36;AMR_AF=0.74;AN=2;ASN_AF=0.84;AVGPOST=0.9966;ERATE=0.0039;EUR_AF=0.74;LDAF=0.6809;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 72040774 rs1872056 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.31;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2140;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 72170400 rs148435644 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0164;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 72190760 rs55738821 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0192;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 72191073 rs2415128 T C 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.48;AMR_AF=0.67;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.76;LDAF=0.5840;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72191266 rs2415129 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.78;AMR_AF=0.96;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.97;LDAF=0.8779;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72432583 rs930871 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9502;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72454729 rs897731 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72462165 rs11072348 A C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9502;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72492779 rs8040828 C A 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.48;AMR_AF=0.66;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.74;LDAF=0.5832;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72545876 rs1426166 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9989;RSQ=0.8603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +15 72546765 rs2912227 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72637795 rs4777502 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.58;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9004;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72638892 rs1800431 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.58;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8994;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 72987588 rs4777527 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9520;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 73002035 rs8033604 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9529;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 73023937 rs12914333 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 73027478 rs2277598 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.28;AMR_AF=0.58;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.65;LDAF=0.4514;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 73052840 rs8024644 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.31;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1951;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 73052845 rs8023358 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.26;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1847;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 73067234 rs11634630 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9693;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 73541513 rs3736510 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.16;AMR_AF=0.56;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3629;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 73545732 rs2623989 T C 100 PASS AA=N;AC=2;AF=0.85;AFR_AF=0.56;AMR_AF=0.94;AN=2;ASN_AF=0.90;AVGPOST=0.9949;ERATE=0.0043;EUR_AF=0.94;LDAF=0.8461;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +15 73551250 rs2251205 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.25;AMR_AF=0.58;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4049;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 73564881 rs1131854 C T 100 PASS AA=c;AC=1;AF=0.37;AFR_AF=0.15;AMR_AF=0.57;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0017;EUR_AF=0.49;LDAF=0.3738;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 73581444 rs489531 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.34;AMR_AF=0.38;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.48;LDAF=0.4676;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 73614834 rs529004 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.69;AMR_AF=0.94;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8693;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.93,-0.01 +15 73616635 rs481579 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.44;AMR_AF=0.94;AN=2;ASN_AF=0.81;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7933;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +15 74000839 rs2291011 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.36;AVGPOST=0.9982;ERATE=0.0024;EUR_AF=0.47;LDAF=0.3556;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 74032234 rs11857595 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.15;AMR_AF=0.30;AN=2;ASN_AF=0.06;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2138;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 74032783 rs28594180 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4246;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 74033033 rs11858458 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.66;AMR_AF=0.90;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8444;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 74177250 rs35697698 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 74178966 rs62007098 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.14;AMR_AF=0.44;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2441;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 74219582 rs3825942 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.41;AMR_AF=0.20;AN=2;ASN_AF=0.14;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2258;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 74238734 rs2304720 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.30;AVGPOST=0.9647;ERATE=0.0095;EUR_AF=0.28;LDAF=0.2790;RSQ=0.9393;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.950:-0.40,-0.22,-5.00 +15 74239613 rs74026313 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.23;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0836;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 74277795 rs10851866 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.85;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6836;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-2.93,-0.01,-1.66 +15 74284406 rs2304715 C G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.49;AMR_AF=0.51;AN=2;ASN_AF=0.48;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5237;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.82 +15 74328116 rs743580 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.65;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.53;LDAF=0.5496;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 74328141 rs743581 G T 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.31;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3873;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 74336633 rs5742915 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.05;AMR_AF=0.36;AN=2;ASN_AF=0.0035;AVGPOST=0.9979;ERATE=0.0018;EUR_AF=0.44;LDAF=0.2264;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 74467856 rs1052622 G A 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.55;AVGPOST=0.9965;ERATE=0.0007;EUR_AF=0.70;LDAF=0.5953;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 74476340 rs2277608 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.20;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.16;LDAF=0.2053;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 74529130 rs11633321 T G 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.13;AMR_AF=0.43;AN=2;ASN_AF=0.35;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4019;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 74560776 rs56107695 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0737;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 74622533 rs2277603 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0999;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 74622678 rs1564782 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4616;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +15 74623272 rs2277605 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.67;LDAF=0.4626;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +15 74623302 rs2277606 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.42;AMR_AF=0.47;AN=2;ASN_AF=0.34;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.68;LDAF=0.4972;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +15 74628242 rs900802 C T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.50;AMR_AF=0.47;AN=2;ASN_AF=0.34;AVGPOST=0.9979;ERATE=0.0014;EUR_AF=0.67;LDAF=0.5146;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 74710593 rs28362912 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.99;AMR_AF=0.75;AN=2;ASN_AF=0.54;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8100;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75044238 rs2472304 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.04;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.3218;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75047426 rs2470890 C T 100 PASS AA=c;AC=2;AF=0.32;AFR_AF=0.03;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9990;ERATE=0.0009;EUR_AF=0.59;LDAF=0.3191;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75115895 rs7162232 G A 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.57;AMR_AF=0.56;AN=2;ASN_AF=0.58;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6121;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75129594 rs2290573 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.17;AVGPOST=0.9931;ERATE=0.0069;EUR_AF=0.50;LDAF=0.2975;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 75130093 rs12898397 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.10;AMR_AF=0.54;AN=2;ASN_AF=0.35;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.58;LDAF=0.4033;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 75130573 rs2290572 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.37;AMR_AF=0.56;AN=2;ASN_AF=0.35;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.58;LDAF=0.4668;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 75131567 rs8039777 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.13;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1691;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-0.06,-0.87,-5.00 +15 75131661 rs4886615 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.60;AMR_AF=0.73;AN=2;ASN_AF=0.71;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6826;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.85,-0.01 +15 75131959 rs936227 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.38;AMR_AF=0.56;AN=2;ASN_AF=0.34;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.58;LDAF=0.4668;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +15 75183935 rs11638130 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.02;AMR_AF=0.47;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.2840;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 75185670 rs7495739 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.32;AMR_AF=0.56;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4085;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 75189930 rs1130741 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.32;AMR_AF=0.56;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4086;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 75336729 rs2304899 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.58;AMR_AF=0.89;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8355;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75498548 rs1466663 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75499602 rs12591506 C A 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.73;AMR_AF=0.96;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8797;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75499619 rs11072531 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.74;AMR_AF=0.92;AN=2;ASN_AF=0.74;AVGPOST=0.9595;ERATE=0.0449;EUR_AF=0.88;LDAF=0.8183;RSQ=0.9042;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75499861 rs11072532 G A 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.73;AMR_AF=0.96;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8795;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75499995 rs28509789 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.46;AMR_AF=0.39;AN=2;ASN_AF=0.33;AVGPOST=0.9950;ERATE=0.0008;EUR_AF=0.26;LDAF=0.3436;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 75503147 rs3743211 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9434;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75631587 rs34234047 A T 100 PASS AA=a;AC=2;AF=0.09;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=0.9943;ERATE=0.0056;EUR_AF=0.11;LDAF=0.0933;RSQ=0.9753;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.41,-0.02 +15 75650836 rs1128933 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.48;LDAF=0.3596;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75650972 rs3809549 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.15;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3847;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75653378 rs7174408 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9951;RSQ=0.9277;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +15 75664570 rs4886696 A T 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.28;AMR_AF=0.63;AN=2;ASN_AF=0.45;AVGPOST=0.9855;ERATE=0.0128;EUR_AF=0.60;LDAF=0.4925;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +15 75664571 rs56395816 A T 100 PASS AA=a;AC=2;AF=0.54;AFR_AF=0.34;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9822;ERATE=0.0116;EUR_AF=0.60;LDAF=0.5364;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +15 75970070 rs8023621 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.14;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.38;LDAF=0.2620;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.050:-5.00,0.00,-5.00 +15 75977920 rs62027240 A G 100 PASS AA=.;AC=2;AF=0.38;AFR_AF=0.27;AMR_AF=0.50;AN=2;ASN_AF=0.24;AVGPOST=0.9809;ERATE=0.0033;EUR_AF=0.51;LDAF=0.3833;RSQ=0.9725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-3.00,-0.47,-0.18 +15 75979782 rs8030131 G T 100 PASS AA=.;AC=2;AF=0.38;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.19;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.52;LDAF=0.3761;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +15 75980112 rs4414463 A G 100 PASS AA=.;AC=2;AF=0.44;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.29;AVGPOST=0.9924;ERATE=0.0007;EUR_AF=0.52;LDAF=0.4365;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 75981507 rs12900539 A G 100 PASS AA=.;AC=2;AF=0.35;AFR_AF=0.27;AMR_AF=0.48;AN=2;ASN_AF=0.14;AVGPOST=0.9821;ERATE=0.0006;EUR_AF=0.51;LDAF=0.3463;RSQ=0.9719;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +15 75982428 rs7182906 C T 100 PASS AA=.;AC=2;AF=0.28;AFR_AF=0.19;AMR_AF=0.37;AN=2;ASN_AF=0.14;AVGPOST=0.9836;ERATE=0.0020;EUR_AF=0.39;LDAF=0.2779;RSQ=0.9698;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.06,-0.00 +15 76191802 rs335689 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9808;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 76523771 rs62030234 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0572;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 76630303 rs4636879 T C 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.21;AMR_AF=0.87;AN=2;ASN_AF=0.89;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6976;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 76630717 rs62028361 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0619;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +15 76632907 rs7180257 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.70;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8622;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +15 77241568 rs1711018 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9520;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 77310636 rs3812911 G C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.44;AMR_AF=0.67;AN=2;ASN_AF=0.53;AVGPOST=0.9963;ERATE=0.0011;EUR_AF=0.84;LDAF=0.6404;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +15 77344793 rs11737 T A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.37;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5321;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 77407114 rs1867780 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2203;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 77471105 rs11856513 C A 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=0.9986;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2052;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 77907145 rs3743481 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.58;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4857;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 77907398 rs202233236 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.8383;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 77907535 rs2271396 C G 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6907;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 77907775 rs2271397 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6949;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 77907784 rs2271398 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.79;AVGPOST=0.9986;ERATE=0.0011;EUR_AF=0.65;LDAF=0.6865;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78290635 rs200408968 C T 100 PASS AA=c;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9816;ERATE=0.0265;EUR_AF=0.09;LDAF=0.0480;RSQ=0.8332;SNPSOURCE=EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:0.850:-1.49,-0.01,-5.00 +15 78390414 rs2289524 T C 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.53;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4160;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 78398146 rs10456 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1418;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 78423479 rs8040395 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.48;AMR_AF=0.42;AN=2;ASN_AF=0.29;AVGPOST=0.9905;ERATE=0.0012;EUR_AF=0.46;LDAF=0.4130;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 78423596 rs11547207 A C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.42;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=0.9723;ERATE=0.0019;EUR_AF=0.26;LDAF=0.2728;RSQ=0.9470;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.39 +15 78441769 rs12442361 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.71;AMR_AF=0.49;AN=2;ASN_AF=0.33;AVGPOST=0.9884;ERATE=0.0016;EUR_AF=0.51;LDAF=0.5065;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78458485 rs3816253 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.53;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3903;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78463890 rs11638547 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.33;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2500;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78466127 rs2304824 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.73;AMR_AF=0.48;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4915;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78471110 rs17850484 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 78471954 rs17479031 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 78473309 rs12915634 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.23;AMR_AF=0.34;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2569;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78474517 rs6495277 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=0.88;AVGPOST=0.9987;ERATE=0.0010;EUR_AF=0.83;LDAF=0.8736;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.07,-0.00 +15 78474787 rs45444496 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0423;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 78565414 rs11629630 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.17;AMR_AF=0.30;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1814;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78565478 rs7163689 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.33;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4341;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 78567853 rs967821 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2093;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78572359 rs9806426 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9946;ERATE=0.0056;EUR_AF=1.00;LDAF=0.9604;RSQ=0.9651;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78581938 rs16969675 C A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.64;AMR_AF=0.70;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5809;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78632830 rs1127472 C G 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.37;AMR_AF=0.69;AN=2;ASN_AF=0.47;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5426;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 78633595 rs2139440 T G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7949;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.54,-0.01,-5.00 +15 78758677 rs2958720 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9796;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78758853 rs2938672 A C 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9781;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78764285 rs3817092 A G 100 PASS AA=A;AC=2;AF=0.16;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1594;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78777312 rs9788758 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78780104 rs2230940 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78786410 rs4887060 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78789676 rs2292116 T C 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.16;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1600;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78825562 rs12906951 C T 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2400;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78834476 rs41280046 A G 100 PASS AA=A;AC=2;AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78911261 rs2869547 T C 100 PASS AA=N;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 78922194 rs55919125 G A 100 PASS AA=G;AC=2;AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0279;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +15 79054900 rs7495616 C G 100 PASS AA=c;AC=2;AF=0.69;AFR_AF=0.74;AMR_AF=0.66;AN=2;ASN_AF=0.60;AVGPOST=0.9855;ERATE=0.0005;EUR_AF=0.73;LDAF=0.6850;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.29,-0.02 +15 79058013 rs2929155 C T 100 PASS AA=c;AC=2;AF=0.67;AFR_AF=0.70;AMR_AF=0.64;AN=2;ASN_AF=0.57;AVGPOST=0.9612;ERATE=0.0022;EUR_AF=0.73;LDAF=0.6580;RSQ=0.9411;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +15 79058572 rs1809421 T G 100 PASS AA=t;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9359;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +15 79058923 rs1809422 G A 100 PASS AA=g;AC=2;AF=0.77;AFR_AF=0.76;AMR_AF=0.80;AN=2;ASN_AF=0.70;AVGPOST=0.7773;ERATE=0.0564;EUR_AF=0.80;LDAF=0.7249;RSQ=0.4669;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|1:1.800:-5.00,-0.68,-0.10 +15 79058951 rs28699256 T C 100 PASS AA=t;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.35;AN=2;ASN_AF=0.07;AVGPOST=0.9160;ERATE=0.0223;EUR_AF=0.41;LDAF=0.2784;RSQ=0.8515;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-3.66 +15 79065557 rs28450923 A G 100 PASS AA=a;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.20;AN=2;ASN_AF=0.37;AVGPOST=0.8579;ERATE=0.0198;EUR_AF=0.13;LDAF=0.2544;RSQ=0.7333;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|0:0.800:-0.72,-0.28,-0.56 +15 79067055 rs2277549 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.24;AMR_AF=0.27;AN=2;ASN_AF=0.20;AVGPOST=0.9531;ERATE=0.0461;EUR_AF=0.35;LDAF=0.2789;RSQ=0.8992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:0.750:-1.19,-0.03,-5.00 +15 79089007 rs3743057 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.73;AMR_AF=0.88;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7952;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 79092603 rs6495329 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.52;AMR_AF=0.41;AN=2;ASN_AF=0.32;AVGPOST=0.9965;ERATE=0.0005;EUR_AF=0.32;LDAF=0.3828;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +15 79217690 rs2044226 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 79231518 rs11638844 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4931;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 79237247 rs1036938 C G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.09;AVGPOST=0.9951;ERATE=0.0019;EUR_AF=0.67;LDAF=0.3903;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +15 79237324 rs1036939 C A 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.27;AMR_AF=0.48;AN=2;ASN_AF=0.09;AVGPOST=0.9846;ERATE=0.0014;EUR_AF=0.66;LDAF=0.3966;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +15 79254480 rs4778732 T A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9840;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +15 79277511 rs2230518 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.41;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2601;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 79296172 rs1562008 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1387;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 79298523 rs894780 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0767;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 79307632 rs3816283 A T 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0937;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 79324419 rs2304991 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.58;AMR_AF=0.79;AN=2;ASN_AF=0.66;AVGPOST=0.9977;ERATE=0.0051;EUR_AF=0.75;LDAF=0.6955;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 79606137 rs3825933 G A 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9790;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 79614418 rs906439 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9794;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 79750127 rs2902954 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.10;AMR_AF=0.26;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.36;LDAF=0.3441;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 79750307 rs1004724 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9547;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 80191343 rs7257 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.31;AMR_AF=0.45;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.53;LDAF=0.4023;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 80414173 rs1522636 C G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.59;AMR_AF=0.83;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.6458;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 80450389 rs1370275 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5127;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 80452075 rs1370274 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.57;AMR_AF=0.51;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6234;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 80452268 rs1370273 G A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.60;AMR_AF=0.51;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6288;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.47,-0.00 +15 80460524 rs1545119 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.76;AMR_AF=0.67;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7701;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 80472431 rs2043691 C A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.86;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6840;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +15 80845136 rs3924894 C T 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.48;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9924;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3383;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 80845137 rs3924893 T C 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.48;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9921;ERATE=0.0007;EUR_AF=0.32;LDAF=0.3384;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 80866609 rs117299940 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0311;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 80867480 rs72732083 G C 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.21;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1175;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 80884025 rs4072568 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.12;AN=2;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.16;LDAF=0.1090;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 81212521 rs2271160 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.15;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1701;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 81212608 rs1553647 G A 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 81430343 rs12438947 T G 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.24;AN=2;ASN_AF=0.45;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=0.12;LDAF=0.2541;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 81578139 rs4072111 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1275;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 81582868 rs8031107 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.78;AMR_AF=0.41;AN=2;ASN_AF=0.52;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.49;LDAF=0.5503;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 81584925 rs61752774 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.16;AN=2;ASN_AF=0.16;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1252;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 81600995 rs4238526 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 81624768 rs4417518 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.90;AMR_AF=0.78;AN=2;ASN_AF=0.71;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.85;LDAF=0.8128;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 81625385 rs11636318 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.24;AMR_AF=0.65;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5495;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 81629009 rs150024184 A G 100 PASS AA=A;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0013;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 81636267 rs7161991 C T 100 PASS AA=T;AC=1;AF=0.82;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.72;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8150;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 81637284 rs4278705 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.26;AMR_AF=0.67;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.74;LDAF=0.5394;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 82431219 rs2457497 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.90;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8158;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 82443939 rs4725 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.57;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3355;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 82444437 rs905450 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.90;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8195;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 82512429 rs2292189 C G 100 PASS AA=c;AC=2;AF=0.76;AFR_AF=0.88;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9676;ERATE=0.0239;EUR_AF=0.69;LDAF=0.7502;RSQ=0.9326;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +15 82517458 rs62012011 A G 100 PASS AA=A;AC=2;AF=0.10;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1048;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.65,-0.11 +15 82530630 rs1972460 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3459;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +15 82563991 rs16973457 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.29;AMR_AF=0.36;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.3665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 83221392 rs3850610 C A 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.31;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1824;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 83224696 rs1145171 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9918;ERATE=0.0038;EUR_AF=1.00;LDAF=0.9933;RSQ=0.5741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 83240293 rs783544 A C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.97;AMR_AF=0.72;AN=2;ASN_AF=0.76;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8040;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 83330873 rs72753906 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0137;RSQ=0.9687;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.900:-0.18,-0.46,-2.49 +15 83478684 rs201191404 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.0028;AN=2;ASN_AF=0.0035;AVGPOST=0.9916;ERATE=0.0012;EUR_AF=0.01;LDAF=0.0087;RSQ=0.5857;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.850:-0.02,-1.40,-5.00 +15 83481880 rs35270670 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.14;AN=2;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1247;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 83521036 rs1256429 C T 100 PASS AA=T;AC=1;AF=0.85;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=0.86;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8512;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 83523368 rs1256426 C G 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.74;AVGPOST=0.9878;ERATE=0.0089;EUR_AF=0.51;LDAF=0.5112;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 83561606 rs41310978 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1367;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 83735926 rs8040457 C G 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.12;AVGPOST=0.9931;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3512;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.13,-0.00,-3.66 +15 84488636 rs4483821 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.84;AMR_AF=0.53;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.48;LDAF=0.6567;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 84539619 rs4144691 C G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.95;AMR_AF=0.88;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8176;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 84568504 rs6603004 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.82;AMR_AF=0.69;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6719;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 84581889 rs12439867 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.3359;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 84581904 rs4842923 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.77;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9839;ERATE=0.0100;EUR_AF=0.53;LDAF=0.6475;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 84582124 rs4842838 G T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.82;AMR_AF=0.69;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6714;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 84651185 rs8031704 C A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.56;AMR_AF=0.29;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0015;EUR_AF=0.35;LDAF=0.3991;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 84651290 rs7176737 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.96;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8826;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 85149771 rs2271433 G T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9164;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 85163998 rs2044502 G C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.87;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.82;LDAF=0.8942;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 85186837 rs72750868 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=0.9970;ERATE=0.0044;EUR_AF=0.10;LDAF=0.0458;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.050:-5.00,0.00,-5.00 +15 85188994 rs2271432 T C 100 PASS AA=t;AC=2;AF=0.90;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.83;LDAF=0.9035;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 85198606 rs17598561 C T 100 PASS AA=C;AC=2;AF=0.05;AFR_AF=0.10;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0530;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 85333953 rs2241645 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.80;AMR_AF=0.72;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.72;LDAF=0.7980;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 85341072 rs56410875 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0471;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 85360101 rs11857356 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.95;AVGPOST=0.9984;ERATE=0.0010;EUR_AF=0.79;LDAF=0.8685;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.92,-0.01 +15 85382193 rs1896864 C A 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.70;AMR_AF=0.66;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7290;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 85383839 rs3803406 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.75;AMR_AF=0.67;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7433;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 85401259 rs306197 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.89;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9865;ERATE=0.0129;EUR_AF=0.74;LDAF=0.7958;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +15 85401419 rs167379 T C 100 PASS AA=t;AC=2;AF=0.85;AFR_AF=0.85;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=0.9923;ERATE=0.0094;EUR_AF=0.81;LDAF=0.8503;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +15 85403340 rs2289140 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0768;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 85438132 rs7166440 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.05;AN=2;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0454;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 85448906 rs2290269 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.30;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=0.9978;ERATE=0.0058;EUR_AF=0.39;LDAF=0.3702;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 85461851 rs8187763 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.10;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.14;LDAF=0.0721;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 85467207 rs3825875 T C 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.40;AMR_AF=0.39;AN=2;ASN_AF=0.30;AVGPOST=0.9979;ERATE=0.0085;EUR_AF=0.39;LDAF=0.3698;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 85476441 rs2305367 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.36;AMR_AF=0.51;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5311;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 85478410 rs2242048 A G 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9282;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 85478729 rs2242046 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.05;AMR_AF=0.29;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.2578;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86087212 rs7162720 C T 100 PASS AA=T;AC=1;AF=0.90;AFR_AF=0.99;AMR_AF=0.84;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9002;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 86122654 rs2061821 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5855;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86122779 rs2061822 T C 100 PASS AA=t;AC=1;AF=0.61;AFR_AF=0.54;AMR_AF=0.66;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6065;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86122916 rs2061823 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5854;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86123019 rs2061824 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5850;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86123833 rs4075256 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5846;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86123924 rs4075255 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5846;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86123988 rs4075254 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5846;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86124419 rs4843073 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.61;LDAF=0.5836;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86124483 rs4843074 C G 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5846;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86124555 rs4843075 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5845;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86124946 rs7162168 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.53;AMR_AF=0.61;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0019;EUR_AF=0.61;LDAF=0.5865;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86124968 rs11633087 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.50;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.60;LDAF=0.5754;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86125031 rs7178065 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.52;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0030;EUR_AF=0.61;LDAF=0.5827;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86125304 rs7179919 C T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.19;AN=2;ASN_AF=0.28;AVGPOST=0.9985;ERATE=0.0117;EUR_AF=0.18;LDAF=0.1805;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 86182670 rs16942564 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0639;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86201859 rs143724764 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0018;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 86253768 rs8037947 T A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.76;AMR_AF=0.88;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7665;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 86253911 rs8038249 T G 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.51;AMR_AF=0.78;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6668;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 86278174 rs2241267 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9260;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 86284342 rs16943792 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.22;LDAF=0.2193;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 86286787 rs61734378 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0562;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86287910 rs11073517 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.17;AMR_AF=0.28;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2217;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 86313048 rs2614657 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.82;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.85;LDAF=0.7996;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 88423463 rs1560975 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.16;AMR_AF=0.54;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 88576185 rs55703281 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.20;AVGPOST=0.9968;ERATE=0.0039;EUR_AF=0.31;LDAF=0.3223;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 88679785 rs1863480 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 88680684 rs1128994 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.38;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0014;EUR_AF=0.26;LDAF=0.2699;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89070815 rs200825981 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.8415;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 89169614 rs3743476 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9969;ERATE=0.0007;EUR_AF=0.36;LDAF=0.2442;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 89169858 rs8027765 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.54;AMR_AF=0.80;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7761;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 89172558 rs3743475 G C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.54;AMR_AF=0.79;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 89173556 rs17777460 C T 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.06;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0421;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.45 +15 89182596 rs3200942 A G 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.24;AVGPOST=0.9983;ERATE=0.0021;EUR_AF=0.51;LDAF=0.3911;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +15 89195526 rs1137166 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.80;AMR_AF=0.76;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7943;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 89442606 rs2280214 C T 100 PASS AA=C;AC=2;AF=0.09;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0879;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 89444760 rs2015495 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.48;AMR_AF=0.53;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4703;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 89450383 rs200463040 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 89450546 rs1878327 C T 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.76;AMR_AF=0.60;AN=2;ASN_AF=0.46;AVGPOST=0.9986;ERATE=0.0042;EUR_AF=0.63;LDAF=0.6073;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 89450587 rs1878326 G T 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.76;AMR_AF=0.61;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6106;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 89456544 rs4945 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.14;AVGPOST=0.9798;ERATE=0.0010;EUR_AF=0.33;LDAF=0.2668;RSQ=0.9601;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.100:-3.11,-0.47,-0.18 +15 89734396 rs78702289 G A 100 PASS AA=t;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0158;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89736558 rs6496562 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.38;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3299;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89754954 rs950541 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.38;LDAF=0.2640;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89804043 rs17803620 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2856;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89804111 rs16942918 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.70;AMR_AF=0.42;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4519;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89806710 rs1981623 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.33;AMR_AF=0.39;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3590;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89806721 rs1981624 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.33;AMR_AF=0.39;AN=2;ASN_AF=0.31;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3592;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89826496 rs9806604 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.64;AMR_AF=0.42;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4439;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89836228 rs2283432 G C 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2911;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89844688 rs2159081 A C 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.37;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0022;EUR_AF=0.41;LDAF=0.3829;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89858602 rs1138465 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.46;AMR_AF=0.41;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4287;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89860786 rs2307438 A C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.55;AMR_AF=0.47;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.42;LDAF=0.4351;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89862341 rs2302084 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.18;AMR_AF=0.36;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3290;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89862366 rs2246900 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.42;LDAF=0.3215;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 89867154 rs2072267 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.82;AMR_AF=0.49;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5306;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90026485 rs4932134 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.43;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2655;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90126121 rs10775247 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.35;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4206;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90128966 rs11629584 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9947;ERATE=0.0023;EUR_AF=0.51;LDAF=0.3806;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90129188 rs1540504 T C 100 PASS AA=c;AC=1;AF=0.78;AFR_AF=0.66;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.90;LDAF=0.7787;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90135432 rs34494298 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.67;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7811;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90138670 rs8042146 C T 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.65;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7761;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90144944 rs4244876 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.57;AMR_AF=0.77;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7559;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90161355 rs2289486 G A 100 PASS AA=A;AC=1;AF=0.86;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8564;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90168108 rs894157 C T 100 PASS AA=T;AC=1;AF=0.85;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.90;LDAF=0.8505;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90174789 rs9672286 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4744;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.69 +15 90174824 rs12900805 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.44;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9971;ERATE=0.0012;EUR_AF=0.56;LDAF=0.4699;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.59 +15 90174955 rs9672296 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.57;LDAF=0.4745;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.09,-0.47,-0.18 +15 90176073 rs3803530 C A 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.43;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.57;LDAF=0.4693;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90176432 rs3803531 T G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.78;AMR_AF=0.80;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.90;LDAF=0.8092;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90177159 rs11633151 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.38;AMR_AF=0.50;AN=2;ASN_AF=0.36;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4597;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90190048 rs1110060 A G 100 PASS AA=g;AC=1;AF=0.54;AFR_AF=0.62;AMR_AF=0.54;AN=2;ASN_AF=0.38;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.61;LDAF=0.5399;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90210333 rs8179071 G A 100 PASS AA=G;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0047;RSQ=0.9397;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90211047 rs894162 A T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.88;AMR_AF=0.86;AN=2;ASN_AF=0.74;AVGPOST=0.9937;ERATE=0.0027;EUR_AF=0.98;LDAF=0.8763;RSQ=0.9792;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +15 90213229 rs6496589 G C 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9072;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +15 90214663 rs8179037 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0368;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.06,-0.92 +15 90226947 rs7169981 C A 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.48;AMR_AF=0.54;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5205;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90245174 rs4287542 T A 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.44;AMR_AF=0.39;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3611;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90245253 rs4316730 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.47;AMR_AF=0.40;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3689;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90245298 rs4306477 G C 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.44;AMR_AF=0.39;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3634;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90246336 rs16974175 A G 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.44;AMR_AF=0.39;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3606;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90248819 rs17238056 A T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.64;AMR_AF=0.56;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5092;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90260145 rs7163367 T A 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.41;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3473;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90270567 rs3743117 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.41;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3519;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90274809 rs72754534 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0535;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90293776 rs2305441 A C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.26;AVGPOST=0.8983;ERATE=0.0141;EUR_AF=0.60;LDAF=0.5481;RSQ=0.8534;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.59,-0.13 +15 90328551 rs10584 G C 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.83;AMR_AF=0.46;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5141;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90333654 rs8192298 A T 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2807;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90334240 rs25654 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2853;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90334345 rs7168329 C G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2803;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90335379 rs8179197 G C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2800;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90335534 rs25652 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0017;EUR_AF=0.26;LDAF=0.2275;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90335788 rs25651 C T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.47;AMR_AF=0.26;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3158;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90336373 rs16943605 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.46;AMR_AF=0.26;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3149;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90346861 rs2305443 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.44;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=0.9945;ERATE=0.0008;EUR_AF=0.50;LDAF=0.4906;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90349558 rs25653 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.91;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=0.9961;ERATE=0.0057;EUR_AF=0.53;LDAF=0.5920;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90455940 rs1256836 G C 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.74;AVGPOST=0.9771;ERATE=0.0014;EUR_AF=0.79;LDAF=0.6190;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.36,-0.25 +15 90610807 rs74038806 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.10;AN=2;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.10;LDAF=0.0767;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.38,-0.29,-0.31 +15 90623052 rs2970357 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.81;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.45;LDAF=0.6175;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90744960 rs12050812 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.58;AVGPOST=0.9947;ERATE=0.0008;EUR_AF=0.19;LDAF=0.2664;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.48 +15 90764203 rs3825998 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.21;AMR_AF=0.17;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2867;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90764219 rs4932305 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.61;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2508;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90764348 rs3825999 C G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.50;AMR_AF=0.47;AN=2;ASN_AF=0.81;AVGPOST=0.9970;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5777;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90764359 rs3826001 T G 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.67;AMR_AF=0.50;AN=2;ASN_AF=0.81;AVGPOST=0.9968;ERATE=0.0010;EUR_AF=0.52;LDAF=0.6286;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90766754 rs908048 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.78;AMR_AF=0.77;AN=2;ASN_AF=0.91;AVGPOST=0.9881;ERATE=0.0064;EUR_AF=0.71;LDAF=0.7878;RSQ=0.9748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +15 90768156 rs1040083 A G 100 PASS AA=a;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9893;ERATE=0.0010;EUR_AF=0.84;LDAF=0.9216;RSQ=0.9452;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90768320 rs11073918 C T 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.11;AMR_AF=0.29;AN=2;ASN_AF=0.35;AVGPOST=0.9825;ERATE=0.0075;EUR_AF=0.25;LDAF=0.2528;RSQ=0.9665;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90771750 rs3751655 T G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.89;AMR_AF=0.73;AN=2;ASN_AF=0.75;AVGPOST=0.9767;ERATE=0.0076;EUR_AF=0.68;LDAF=0.7489;RSQ=0.9584;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +15 90773782 rs2073706 C T 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.39;AMR_AF=0.52;AN=2;ASN_AF=0.75;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.52;LDAF=0.5525;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +15 90774259 rs1044813 G C 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.18;AMR_AF=0.36;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3574;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90784207 rs7166441 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9993;RSQ=0.7797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90784250 rs7171194 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.98;AMR_AF=0.76;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7889;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90794102 rs4932171 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.20;AMR_AF=0.38;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90794757 rs4357917 T G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.79;AMR_AF=0.59;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5951;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90794845 rs2882858 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0020;EUR_AF=0.26;LDAF=0.3615;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90796558 rs12912620 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3626;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90798953 rs2063739 C T 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3487;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90800408 rs2063742 C G 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3492;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90800449 rs2063743 C T 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90801248 rs2048706 C A 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.16;AMR_AF=0.36;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3556;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 90809633 rs9635390 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.94;LDAF=0.9214;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +15 90814664 rs11073922 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0571;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 90897885 rs8042825 G C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.45;AMR_AF=0.20;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.20;LDAF=0.2974;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90897952 rs8023776 C T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2985;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90903311 rs2589957 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.80;AMR_AF=0.62;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6658;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90969335 rs2256388 G T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.82;AMR_AF=0.57;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6503;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 90983706 rs8027211 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.22;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1883;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 91009192 rs2074583 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.38;AMR_AF=0.46;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4333;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 91009484 rs2074585 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.97;AMR_AF=0.69;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.55;LDAF=0.7376;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 91010776 rs1505936 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.71;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4273;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 91017232 rs1145325 G A 100 PASS AA=A;AC=1;AF=0.97;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9749;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 91083353 rs8033595 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.35;AMR_AF=0.45;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3927;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 91423543 rs6224 G T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.85;AMR_AF=0.33;AN=2;ASN_AF=0.13;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4461;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 91424574 rs6226 G C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.97;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7005;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 91428290 rs11539637 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.37;AMR_AF=0.71;AN=2;ASN_AF=0.83;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.52;LDAF=0.5982;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 91428636 rs7177338 G A 100 PASS AA=g;AC=1;AF=0.59;AFR_AF=0.41;AMR_AF=0.64;AN=2;ASN_AF=0.82;AVGPOST=0.9986;ERATE=0.0026;EUR_AF=0.51;LDAF=0.5931;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 91430436 rs2071383 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.90;AMR_AF=0.98;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9337;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 91430647 rs28438927 A C 100 PASS AA=A;AC=2;AF=0.17;AFR_AF=0.16;AMR_AF=0.19;AN=2;AVGPOST=0.9985;ERATE=0.0008;EUR_AF=0.28;LDAF=0.1670;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +15 91483531 rs17593423 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.19;AN=2;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.30;LDAF=0.1418;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 91524841 rs7172758 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 91795758 rs16945457 A C 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.42;AMR_AF=0.17;AN=2;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1901;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 92459187 rs4077721 T C 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.68;AMR_AF=0.61;AN=2;ASN_AF=0.90;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.55;LDAF=0.6794;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 92647645 rs1517618 G C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.93;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8899;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 92937268 rs3743365 G T 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.35;AMR_AF=0.62;AN=2;ASN_AF=0.44;AVGPOST=0.9865;ERATE=0.0009;EUR_AF=0.84;LDAF=0.5904;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-3.04,-0.47,-0.18 +15 92937276 rs3743364 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.62;AN=2;ASN_AF=0.44;AVGPOST=0.9910;ERATE=0.0005;EUR_AF=0.84;LDAF=0.5863;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +15 92987938 rs2305561 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.61;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2024;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 92988165 rs11637874 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.49;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1715;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 93015427 rs1455773 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4085;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 93043545 rs7178722 T G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.84;AMR_AF=0.49;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.49;LDAF=0.5553;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 93198513 rs503112 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=0.9954;ERATE=0.0008;EUR_AF=0.16;LDAF=0.1064;RSQ=0.9811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 93198671 rs501381 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9675;RSQ=0.9617;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.31,-0.02 +15 93510603 rs4777755 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.60;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8341;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 93521604 rs11074121 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 93521651 rs11074122 T G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9982;ERATE=0.0033;EUR_AF=0.84;LDAF=0.8147;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 93536197 rs2272457 C T 100 PASS AA=C;AC=2;AF=0.19;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1942;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 93552330 rs12915582 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.56;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8204;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 93555717 rs2119010 A G 100 PASS AA=A;AC=2;AF=0.15;AFR_AF=0.06;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1494;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 93567864 rs12906163 A C 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2008;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 93588264 rs4299103 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.37;AMR_AF=0.47;AN=2;ASN_AF=0.73;AVGPOST=0.9094;ERATE=0.0280;EUR_AF=0.38;LDAF=0.4801;RSQ=0.8700;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-1.85,-0.01,-5.00 +15 93588336 rs4238485 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.0964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.16,-0.00 +15 93632123 rs8038770 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.54;AMR_AF=0.38;AN=2;ASN_AF=0.68;AVGPOST=0.9490;ERATE=0.0030;EUR_AF=0.36;LDAF=0.4894;RSQ=0.9221;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.41,-0.21 +15 94841691 rs61737195 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1554;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 97327393 rs3812907 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1028;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 98504100 rs4965046 G C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.60;AMR_AF=0.69;AN=2;ASN_AF=0.89;AVGPOST=0.9519;ERATE=0.0073;EUR_AF=0.73;LDAF=0.7232;RSQ=0.9093;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.67,-0.10 +15 98513845 rs2130882 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.08;AMR_AF=0.48;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0025;EUR_AF=0.49;LDAF=0.4118;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 98995081 rs12101356 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9242;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 99023968 rs4528551 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.21;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3413;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 99456253 rs2272037 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.19;AMR_AF=0.60;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.58;LDAF=0.5201;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 99456553 rs951715 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.60;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0036;EUR_AF=0.66;LDAF=0.6176;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 99478225 rs2229765 G A 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.31;AMR_AF=0.35;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3712;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 99500256 rs2593053 G A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9974;ERATE=0.0109;EUR_AF=0.40;LDAF=0.2934;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 99715352 rs2602016 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.94;AMR_AF=0.77;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8496;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 99762041 rs78534478 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0193;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 100246936 rs325408 T C 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.22;AMR_AF=0.68;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.79;LDAF=0.6302;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 100246942 rs325407 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.61;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9063;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 100251015 rs325403 C G 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.32;AMR_AF=0.69;AN=2;ASN_AF=0.70;AVGPOST=0.9899;ERATE=0.0145;EUR_AF=0.62;LDAF=0.5835;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 100269309 rs6598263 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0022;EUR_AF=1.00;LDAF=0.9727;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 100269680 rs2061007 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.10;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=0.61;LDAF=0.4173;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 100269796 rs6598264 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9744;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 100514561 rs2581340 G C 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.62;AMR_AF=0.59;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.66;LDAF=0.5945;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 100514614 rs2573652 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.82;AMR_AF=0.61;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6541;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 100514779 rs182634994 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 100516472 rs11634977 G A 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.36;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9954;ERATE=0.0006;EUR_AF=0.66;LDAF=0.5292;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +15 100533218 rs7175995 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.27;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9982;ERATE=0.0011;EUR_AF=0.61;LDAF=0.4553;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 100589056 rs8028251 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3775;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 100594271 rs28529328 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.31;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3244;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 100594299 rs28587358 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.31;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3240;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 100636586 rs4965583 G A 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.24;AMR_AF=0.25;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.13;LDAF=0.2773;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 100672237 rs12907333 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9965;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 100692845 rs28567966 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9984;ERATE=0.0028;EUR_AF=0.14;LDAF=0.1322;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 100695347 rs8024690 T C 100 PASS AA=t;AC=2;AF=0.36;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3569;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 100881995 rs2585224 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.48;AMR_AF=0.37;AN=2;ASN_AF=0.21;AVGPOST=0.9755;ERATE=0.0045;EUR_AF=0.27;LDAF=0.3176;RSQ=0.9596;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.09 +15 100942962 rs2439928 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 101041896 rs1354332 T C 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.52;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7929;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 101113862 rs12719734 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.98;AMR_AF=0.98;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8958;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +15 101115159 rs1532765 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.26;AMR_AF=0.29;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1728;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 101440988 rs4646674 A C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.76;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.63;LDAF=0.6649;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101445900 rs3825924 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.49;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2505;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101448571 rs4646686 T A 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2273;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101550858 rs12595297 G T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.74;AMR_AF=0.76;AN=2;ASN_AF=0.74;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7361;RSQ=0.9947;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101562793 rs11247253 G A 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.41;AMR_AF=0.86;AN=2;ASN_AF=0.86;AVGPOST=0.9955;ERATE=0.0020;EUR_AF=0.87;LDAF=0.7624;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +15 101567547 rs41319544 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0867;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 101569467 rs11639307 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.35;AMR_AF=0.65;AN=2;ASN_AF=0.57;AVGPOST=0.9960;ERATE=0.0014;EUR_AF=0.76;LDAF=0.5989;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101591923 rs4965778 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.18;AMR_AF=0.52;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4773;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101597266 rs2924845 A G 100 PASS AA=g;AC=1;AF=0.57;AFR_AF=0.53;AMR_AF=0.56;AN=2;ASN_AF=0.84;AVGPOST=0.9980;ERATE=0.0015;EUR_AF=0.40;LDAF=0.5675;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101606889 rs2924835 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.31;AVGPOST=0.9923;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2274;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101606890 rs56193104 C A 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.31;AVGPOST=0.9919;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2275;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 101827855 rs61752834 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.43;AMR_AF=0.50;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3926;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 102191869 rs672314 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.77;AMR_AF=0.56;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5845;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 102192540 rs675436 T G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.04;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.45;LDAF=0.2724;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 102192548 rs2939587 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9888;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +15 102211654 rs606511 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.28;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2692;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +15 102224341 rs12901450 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.24;AMR_AF=0.43;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.27;LDAF=0.4086;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +15 102264304 rs1143138 G C 100 PASS AA=.;AC=1;AF=0.46;AFR_AF=0.28;AMR_AF=0.44;AN=2;ASN_AF=0.84;AVGPOST=0.9759;ERATE=0.0016;EUR_AF=0.29;LDAF=0.4598;RSQ=0.9683;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-0.43,-0.21,-2.18 +14 19553372 rs199677086 G A 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.8610;ERATE=0.0326;EUR_AF=0.24;LDAF=0.2822;RSQ=0.6182;SNPSOURCE=EXOME;THETA=0.0192;VT=SNP GT:DS:GL 0|1:0.750:-0.48,-0.48,-0.48 +14 19574243 rs200779890 C A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.23;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=0.7169;ERATE=0.0205;EUR_AF=0.24;LDAF=0.3343;RSQ=0.3390;SNPSOURCE=EXOME;THETA=0.0138;VT=SNP GT:DS:GL 1|0:0.800:-0.48,-0.48,-0.48 +14 20020194 rs202067492 C T 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=0.8248;ERATE=0.0019;EUR_AF=0.19;LDAF=0.2565;RSQ=0.5447;SNPSOURCE=EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:0.750:-0.48,-0.48,-0.48 +14 20020201 rs201262647 G A 100 PASS AA=g;AC=1;AF=0.18;AFR_AF=0.20;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=0.8270;ERATE=0.0008;EUR_AF=0.19;LDAF=0.2521;RSQ=0.5525;SNPSOURCE=EXOME;THETA=0.0295;VT=SNP GT:DS:GL 1|0:0.750:-0.48,-0.48,-0.48 +14 20216298 rs12896533 T C 100 PASS AA=.;AC=2;AF=0.70;AFR_AF=0.55;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9944;ERATE=0.0025;EUR_AF=0.76;LDAF=0.6960;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.55,-0.00 +14 20248828 rs2635535 C T 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=0.9947;ERATE=0.0114;EUR_AF=0.36;LDAF=0.2758;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +14 20249176 rs2815960 G A 100 PASS AA=.;AC=2;AF=0.27;AFR_AF=0.09;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9970;ERATE=0.0066;EUR_AF=0.36;LDAF=0.2726;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-3.80,-0.00 +14 20295834 rs2801164 T C 100 PASS AA=.;AC=2;AF=0.47;AFR_AF=0.60;AMR_AF=0.44;AN=2;ASN_AF=0.42;AVGPOST=0.9854;ERATE=0.0072;EUR_AF=0.45;LDAF=0.4739;RSQ=0.9717;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +14 20296397 rs200261876 G T 100 PASS AA=.;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.21;AN=2;ASN_AF=0.29;AVGPOST=0.9594;ERATE=0.0973;EUR_AF=0.21;LDAF=0.2252;RSQ=0.8831;SNPSOURCE=EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-2.54,-0.00,-5.00 +14 20403909 rs2792148 T C 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.39;LDAF=0.2708;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20404091 rs12885778 G A 100 PASS AA=.;AC=1;AF=0.30;AFR_AF=0.30;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9988;ERATE=0.0043;EUR_AF=0.35;LDAF=0.3021;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20404614 rs34608158 C A 100 PASS AA=.;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.1893;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20404735 rs34394400 C T 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.34;LDAF=0.2376;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20404736 rs2792146 G A 100 PASS AA=.;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.61;AVGPOST=0.9992;ERATE=0.0028;EUR_AF=0.41;LDAF=0.4431;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20404767 rs2792145 A G 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.46;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4131;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20444490 rs11158071 C T 100 PASS AA=.;AC=2;AF=0.63;AFR_AF=0.19;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9960;ERATE=0.0025;EUR_AF=0.68;LDAF=0.6285;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +14 20482471 rs12590785 C T 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.42;AMR_AF=0.88;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7878;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 20501962 rs2775261 G C 100 PASS AA=.;AC=2;AF=0.87;AFR_AF=0.72;AMR_AF=0.87;AN=2;ASN_AF=0.95;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.92;LDAF=0.8737;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +14 20502120 rs17277032 C T 100 PASS AA=.;AC=2;AF=0.32;AFR_AF=0.11;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3165;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 20528207 rs1958715 G A 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.52;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4949;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20528321 rs1958716 A G 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.52;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4949;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20528359 rs1959630 G T 100 PASS AA=.;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 20528362 rs1958717 A G 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.52;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4959;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20528467 rs200018603 C T 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.32;AVGPOST=0.9787;ERATE=0.0704;EUR_AF=0.18;LDAF=0.2588;RSQ=0.9725;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20528505 rs2775253 T A 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4063;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20528528 rs2775254 G A 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4063;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20529019 rs1959629 C T 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.39;AMR_AF=0.39;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4095;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20529043 rs1959628 C G 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4063;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20529177 rs1959627 C T 100 PASS AA=.;AC=1;AF=0.42;AFR_AF=0.43;AMR_AF=0.39;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4196;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20586042 rs8005245 G C 100 PASS AA=.;AC=1;AF=0.42;AFR_AF=0.30;AMR_AF=0.42;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4246;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20586432 rs9323534 C T 100 PASS AA=.;AC=1;AF=0.46;AFR_AF=0.35;AMR_AF=0.45;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4566;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20665887 rs4981823 G C 100 PASS AA=c;AC=1;AF=0.90;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8999;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20763446 rs1953551 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9419;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 20764585 rs1953552 A C 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.25;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4497;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20767618 rs2318864 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.75;AMR_AF=0.83;AN=2;ASN_AF=0.80;AVGPOST=0.9990;ERATE=0.0042;EUR_AF=0.75;LDAF=0.7743;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 20770036 rs3742945 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.75;AMR_AF=0.83;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7770;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 20784431 rs17242578 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0900;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20784718 rs1132644 G T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.75;AMR_AF=0.46;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20815013 rs1713430 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.76;AMR_AF=0.37;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4523;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20820537 rs1760919 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.76;AMR_AF=0.37;AN=2;ASN_AF=0.35;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4500;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20822219 rs1713412 G T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.67;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=0.9985;ERATE=0.0015;EUR_AF=0.04;LDAF=0.2313;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20824181 rs3093930 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.29;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9875;ERATE=0.0241;EUR_AF=0.68;LDAF=0.5774;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20824859 rs878156 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.42;AMR_AF=0.16;AN=2;ASN_AF=0.17;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1982;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20837701 rs938886 G C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.50;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3248;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20841162 rs1760909 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.45;AMR_AF=0.32;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3117;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20841313 rs1713448 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.66;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.23;LDAF=0.3615;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20841707 rs1713449 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.46;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3125;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20843889 rs1760908 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.37;AMR_AF=0.33;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2843;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20854734 rs945011 A G 100 PASS AA=G;AC=1;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9960;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20859084 rs872073 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1901;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20859205 rs872074 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.28;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1545;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20916958 rs938883 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.61;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.58;LDAF=0.5274;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20916987 rs938882 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.47;AN=2;ASN_AF=0.28;AVGPOST=0.9994;ERATE=0.0027;EUR_AF=0.57;LDAF=0.4630;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20917442 rs938881 A T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5663;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20920250 rs2275007 T C 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.67;AMR_AF=0.52;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5687;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20920340 rs2275006 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.67;AMR_AF=0.52;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.63;LDAF=0.5718;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20924204 rs2307486 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0187;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0136;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20925154 rs1130409 T G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.36;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9983;ERATE=0.0009;EUR_AF=0.52;LDAF=0.4438;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20928359 rs35567022 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.05;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1377;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 20940515 rs1049562 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.25;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.18;LDAF=0.1801;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20940606 rs1049564 G A 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.28;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0023;EUR_AF=0.19;LDAF=0.2217;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20940626 rs1130650 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.28;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2233;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 20942744 rs1713420 A G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.34;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2104;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21024605 rs8014474 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.18;AMR_AF=0.62;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0024;EUR_AF=0.78;LDAF=0.5897;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21024619 rs1243647 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.78;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7397;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21024786 rs12590446 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.19;AMR_AF=0.64;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5976;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21058902 rs41317318 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1020;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21109170 rs11628297 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21109278 rs11627438 A T 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4602;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21109385 rs11622969 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4571;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21109671 rs11627574 A G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4735;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21109726 rs11622794 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4721;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21109859 rs11156622 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4735;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21167576 rs3748338 A T 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.19;AVGPOST=0.9991;ERATE=0.0007;EUR_AF=0.14;LDAF=0.1181;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21215692 rs10136680 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.81;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.73;LDAF=0.7945;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21215728 rs10135976 G C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.83;AMR_AF=0.81;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8332;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21215997 rs11847654 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2820;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21238318 rs3827905 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.22;AMR_AF=0.59;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5747;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21359808 rs2233859 C A 100 PASS AA=c;AC=1;AF=0.31;AFR_AF=0.04;AMR_AF=0.49;AN=2;ASN_AF=0.26;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.42;LDAF=0.3066;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21360216 rs2073342 C G 100 PASS AA=N;AC=2;AF=0.66;AFR_AF=0.39;AMR_AF=0.80;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6625;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21458131 rs2741733 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9830;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21463430 rs2741739 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9897;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21467913 rs2234632 T G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.96;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7537;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21469151 rs2234636 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.13;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3156;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21486137 rs1243445 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9914;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21486442 rs1243446 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3362;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21488046 rs1243448 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9150;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21489044 rs34056586 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.16;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0481;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21500121 rs9624 G T 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0017;EUR_AF=0.12;LDAF=0.1627;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21511458 rs1263872 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.64;AMR_AF=0.87;AN=2;ASN_AF=0.81;AVGPOST=0.9788;ERATE=0.0659;EUR_AF=0.79;LDAF=0.7699;RSQ=0.9529;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21511497 rs1243469 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.73;AMR_AF=0.93;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8545;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21526044 rs12435011 T C 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.38;AMR_AF=0.57;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5598;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21526079 rs12437266 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.39;AMR_AF=0.57;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.63;LDAF=0.5626;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21542766 rs12889267 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.31;AN=2;ASN_AF=0.03;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1094;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.22 +14 21549893 rs7143633 G C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.80;AMR_AF=0.89;AN=2;ASN_AF=0.54;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7553;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.00,-0.05 +14 21551069 rs1958396 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.97;AMR_AF=0.94;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8286;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21559311 rs34720103 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.06;AN=2;AVGPOST=0.9974;ERATE=0.0007;EUR_AF=0.04;LDAF=0.0327;RSQ=0.9634;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21623290 rs7145814 T C 100 PASS AA=t;AC=1;AF=0.72;AFR_AF=0.85;AMR_AF=0.73;AN=2;ASN_AF=0.49;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7146;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21623489 rs45462402 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.69;AMR_AF=0.35;AN=2;ASN_AF=0.66;AVGPOST=0.9981;ERATE=0.0070;EUR_AF=0.20;LDAF=0.4577;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21623836 rs4982419 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.66;AMR_AF=0.72;AN=2;ASN_AF=0.47;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.75;LDAF=0.6532;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21624197 rs10135366 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.38;AMR_AF=0.70;AN=2;ASN_AF=0.41;AVGPOST=0.9991;ERATE=0.0007;EUR_AF=0.73;LDAF=0.5620;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21699069 rs8016099 A C 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2237;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21769193 rs1040904 C A 100 PASS AA=c;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=0.9840;ERATE=0.0022;EUR_AF=0.05;LDAF=0.0638;RSQ=0.9050;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21770730 rs6571751 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.50;AN=2;ASN_AF=0.33;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.50;LDAF=0.4545;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21778792 rs1957414 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.33;AMR_AF=0.38;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3847;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21829129 rs3762158 C G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.81;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8757;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21829404 rs1543494 T C 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.67;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8346;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21831052 rs10138699 T C 100 PASS AA=T;AC=1;AF=0.82;AFR_AF=0.58;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8149;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21831112 rs10146717 G A 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.58;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8149;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21831666 rs146874412 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.11;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0197;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21831692 rs10139379 T A 100 PASS AA=A;AC=1;AF=0.88;AFR_AF=0.81;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8757;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21833147 rs2295866 G A 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.58;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8149;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21836400 rs8008670 T C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.81;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8757;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21871653 rs8022395 C T 100 PASS AA=T;AC=1;AF=0.91;AFR_AF=0.94;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9058;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21874068 rs7155123 G C 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.56;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8091;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21930596 rs10143000 G A 100 PASS AA=A;AC=1;AF=0.91;AFR_AF=0.99;AMR_AF=0.85;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9131;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21931955 rs11848193 T A 100 PASS AA=t;AC=1;AF=0.19;AFR_AF=0.36;AMR_AF=0.26;AN=2;ASN_AF=0.06;AVGPOST=0.9978;ERATE=0.0056;EUR_AF=0.16;LDAF=0.1942;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21945415 rs2282046 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.45;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3939;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21945629 rs12878084 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1289;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21960408 rs3737050 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.62;AMR_AF=0.65;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6587;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21967916 rs1139130 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.59;AMR_AF=0.60;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 21968619 rs1263790 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0960;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21970091 rs1263792 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0777;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 21971729 rs2242526 C G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.52;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.44;LDAF=0.4283;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 21993498 rs1263811 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.69;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9931;ERATE=0.0139;EUR_AF=0.87;LDAF=0.8100;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 22037905 rs8009501 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.70;AMR_AF=0.78;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7088;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 22038162 rs17197261 A C 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0855;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 22038272 rs138619714 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0006;LDAF=0.0023;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 22038450 rs11626669 G A 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.41;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4755;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 22038659 rs17792778 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.67;AMR_AF=0.78;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7015;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 22038915 rs4982462 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.34;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5081;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 22102374 rs12894405 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9777;ERATE=0.0075;EUR_AF=0.32;LDAF=0.4125;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.24,-0.00 +14 22102439 rs35963889 C G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.43;AVGPOST=0.9805;ERATE=0.0069;EUR_AF=0.23;LDAF=0.3117;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 22102592 rs10138694 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.40;AMR_AF=0.38;AN=2;ASN_AF=0.44;AVGPOST=0.9783;ERATE=0.0056;EUR_AF=0.28;LDAF=0.3637;RSQ=0.9706;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +14 22102612 rs10138704 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.40;AMR_AF=0.38;AN=2;ASN_AF=0.44;AVGPOST=0.9797;ERATE=0.0046;EUR_AF=0.28;LDAF=0.3649;RSQ=0.9716;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.41,-0.02 +14 22102800 rs10146821 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0824;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 22133416 rs12717305 A G 100 PASS AA=a;AC=1;AF=0.48;AFR_AF=0.59;AMR_AF=0.51;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.50;LDAF=0.4779;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 22133648 rs2874103 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.93;AMR_AF=0.70;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7414;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 22133997 rs970382 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.94;AMR_AF=0.70;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7421;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 23044002 rs7621 G T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.81;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7569;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23058084 rs1051101 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7975;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23235697 rs1957373 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.07;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4360;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 23235808 rs1957374 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.07;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4330;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 23236524 rs8572 C T 100 PASS AA=c;AC=2;AF=0.80;AFR_AF=0.60;AMR_AF=0.90;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.85;LDAF=0.7969;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23239512 rs2075846 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.07;AMR_AF=0.56;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.44;LDAF=0.4397;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 23239880 rs1957502 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7948;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23240328 rs8786 T A 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1833;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23242828 rs1061040 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.46;AMR_AF=0.89;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7975;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23248112 rs1805061 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.26;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9989;ERATE=0.0018;EUR_AF=0.13;LDAF=0.2219;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0196;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 23282110 rs8018462 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.48;AMR_AF=0.67;AN=2;ASN_AF=0.79;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6093;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23282449 rs1805059 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.48;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6412;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23299135 rs1135641 G T 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.57;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5268;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23299286 rs4982685 T C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.85;AMR_AF=0.88;AN=2;ASN_AF=0.99;AVGPOST=0.9915;ERATE=0.0040;EUR_AF=0.83;LDAF=0.8801;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23302585 rs12050397 T A 100 PASS AA=A;AC=1;AF=0.89;AFR_AF=0.85;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8857;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23306048 rs1042703 C T 100 PASS AA=T;AC=1;AF=0.89;AFR_AF=0.85;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8848;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23312869 rs2236305 G T 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.29;AMR_AF=0.17;AN=2;ASN_AF=0.37;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2515;RSQ=0.9971;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23312875 rs2236306 G C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.37;AMR_AF=0.18;AN=2;ASN_AF=0.37;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2754;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23312923 rs2236307 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.37;AMR_AF=0.18;AN=2;ASN_AF=0.37;AVGPOST=0.9973;ERATE=0.0020;EUR_AF=0.19;LDAF=0.2761;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23371055 rs1127066 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.27;AVGPOST=0.9727;ERATE=0.0590;EUR_AF=0.28;LDAF=0.2409;RSQ=0.9460;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23374435 rs2295680 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.05;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5193;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23374862 rs2295682 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.05;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5193;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23375564 rs72681969 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.04;LDAF=0.0209;RSQ=0.9698;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23391913 rs8007089 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.78;LDAF=0.8003;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23394069 rs1956881 A C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.38;AMR_AF=0.65;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6128;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23444084 rs61737805 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0297;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 23523353 rs139832060 G T 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0012;RSQ=0.8940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23524703 rs79158479 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.0040;LDAF=0.0126;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23549379 rs941719 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23607271 rs1569951 C T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.13;AMR_AF=0.51;AN=2;ASN_AF=0.48;AVGPOST=0.9979;ERATE=0.0084;EUR_AF=0.49;LDAF=0.4098;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23745533 rs10131813 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.30;AVGPOST=0.9878;ERATE=0.0030;EUR_AF=0.38;LDAF=0.3497;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 23777099 rs2231301 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.31;AN=2;ASN_AF=0.52;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.25;LDAF=0.2875;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23777374 rs910332 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23856896 rs178642 A G 100 PASS AA=g;AC=2;AF=0.52;AFR_AF=0.43;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9955;ERATE=0.0080;EUR_AF=0.50;LDAF=0.5241;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23872666 rs434273 T C 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.98;AMR_AF=0.82;AN=2;ASN_AF=0.68;AVGPOST=0.9981;ERATE=0.0011;EUR_AF=0.75;LDAF=0.7941;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23902753 rs2069540 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.63;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9992;ERATE=0.0009;EUR_AF=0.48;LDAF=0.4697;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 23940081 rs1028587 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7152;RSQ=0.9997;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23940086 rs1028588 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=0.75;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8830;RSQ=0.9973;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23944505 rs2236260 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.33;AMR_AF=0.62;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6184;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23944514 rs2236261 C A 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.54;AMR_AF=0.67;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.84;LDAF=0.6924;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 23945366 rs2295706 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7152;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24033027 rs12897422 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0605;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24045714 rs10151899 C A 100 PASS AA=.;AC=1;AF=0.02;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0194;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-1.97,-0.00,-3.74 +14 24458162 rs2273946 G C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.94;AMR_AF=0.48;AN=2;ASN_AF=0.87;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.33;LDAF=0.6309;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24458211 rs2273947 A T 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.31;AVGPOST=0.9962;ERATE=0.0007;EUR_AF=0.10;LDAF=0.1860;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.10 +14 24523594 rs11158525 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.51;AMR_AF=0.59;AN=2;ASN_AF=0.10;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4241;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24525634 rs4982851 C A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.71;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8822;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +14 24525782 rs4982852 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0014;EUR_AF=0.88;LDAF=0.9338;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24526206 rs45484702 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2122;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24526478 rs12879859 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.20;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2829;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24529890 rs1951635 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9549;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24531641 rs960266 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.55;AVGPOST=0.9992;ERATE=0.0025;EUR_AF=0.09;LDAF=0.2602;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24533474 rs117092113 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0196;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24533539 rs10146906 C A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.48;AMR_AF=0.44;AN=2;ASN_AF=0.04;AVGPOST=0.9960;ERATE=0.0191;EUR_AF=0.48;LDAF=0.3600;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0195;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24534206 rs139165380 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;ASN_AF=0.0035;AVGPOST=0.9857;ERATE=0.0055;EUR_AF=0.01;LDAF=0.0150;RSQ=0.6695;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24534471 rs116307579 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0128;RSQ=0.9758;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24543873 rs2025256 G A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.52;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=0.9984;ERATE=0.0013;EUR_AF=0.83;LDAF=0.8084;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24545366 rs2070342 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.59;AMR_AF=0.43;AN=2;ASN_AF=0.48;AVGPOST=0.9963;ERATE=0.0029;EUR_AF=0.35;LDAF=0.4536;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24567498 rs3021119 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24572495 rs2071586 G C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.65;AMR_AF=0.28;AN=2;ASN_AF=0.61;AVGPOST=0.9854;ERATE=0.0057;EUR_AF=0.26;LDAF=0.4418;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24587639 rs3825584 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.45;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3620;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24587667 rs17101367 C T 100 PASS AA=t;AC=1;AF=0.30;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.21;LDAF=0.3008;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24614361 rs7146672 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9940;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24615435 rs4575 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.74;AMR_AF=0.50;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.5169;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24617238 rs2273913 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.40;AMR_AF=0.20;AN=2;ASN_AF=0.55;AVGPOST=0.9880;ERATE=0.0043;EUR_AF=0.22;LDAF=0.3464;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0112;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24624741 rs2295979 C G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.90;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.50;LDAF=0.6432;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24647814 rs1885711 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.88;AMR_AF=0.62;AN=2;ASN_AF=0.93;AVGPOST=0.9941;ERATE=0.0043;EUR_AF=0.51;LDAF=0.7244;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24647957 rs1885710 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.88;AMR_AF=0.60;AN=2;ASN_AF=0.94;AVGPOST=0.9986;ERATE=0.0010;EUR_AF=0.50;LDAF=0.7190;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24653523 rs11550452 G C 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.44;AVGPOST=0.9896;ERATE=0.0072;EUR_AF=0.29;LDAF=0.3052;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24653954 rs7146310 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.22;AMR_AF=0.26;AN=2;ASN_AF=0.44;AVGPOST=0.9954;ERATE=0.0024;EUR_AF=0.26;LDAF=0.2975;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24654489 rs2025258 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.36;AMR_AF=0.30;AN=2;ASN_AF=0.82;AVGPOST=0.9978;ERATE=0.0024;EUR_AF=0.34;LDAF=0.4642;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24656251 rs2295978 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.31;AMR_AF=0.26;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3177;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24657407 rs6573607 T G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.88;AMR_AF=0.60;AN=2;ASN_AF=0.94;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.51;LDAF=0.7196;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24662177 rs10583 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24718515 rs2229463 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.69;AMR_AF=0.84;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7289;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24728294 rs1126432 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.15;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1662;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24735624 rs2877612 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.33;AMR_AF=0.38;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3432;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24736027 rs14193 G A 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.71;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.38;LDAF=0.5367;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24736961 rs729421 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.76;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5548;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24737203 rs941502 A T 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.76;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5552;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 24738379 rs59227799 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1399;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24740272 rs78807053 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1365;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24760764 rs10134537 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0827;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24760808 rs1131941 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1540;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24771137 rs4247000 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.91;AMR_AF=0.93;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9136;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24771256 rs4247001 T C 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.88;AMR_AF=0.92;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.98;LDAF=0.9056;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24771285 rs4280164 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1536;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24772922 rs4982895 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.92;AMR_AF=0.93;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9154;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24773387 rs2144494 T C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1512;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24776769 rs11158635 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1531;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24787588 rs3181385 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0553;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24793600 rs1884366 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9483;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24793647 rs6573722 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.51;AMR_AF=0.54;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0037;EUR_AF=0.42;LDAF=0.5107;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24795237 rs55970272 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9423;RSQ=0.9968;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24795258 rs11622863 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.53;AMR_AF=0.88;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.6870;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24799024 rs1109152 G C 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.07;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2330;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24837668 rs45565135 G C 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.18;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1712;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.88,-0.06 +14 24839165 rs2228233 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.40;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9929;ERATE=0.0032;EUR_AF=0.28;LDAF=0.3779;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24845185 rs45570732 C T 100 PASS AA=C;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0036;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24846961 rs10362 G T 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.09;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1856;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24877161 rs146351794 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0258;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24883887 rs8017377 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.05;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.46;LDAF=0.2449;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24885606 rs17103672 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.11;AMR_AF=0.04;AN=2;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0507;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24901249 rs3742520 A C 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.09;AMR_AF=0.56;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4488;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24901276 rs7151995 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9712;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24901433 rs17795094 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9973;ERATE=0.0048;EUR_AF=0.11;LDAF=0.0827;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 24901844 rs2255591 A G 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.43;AMR_AF=0.80;AN=2;ASN_AF=0.73;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6865;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24905548 rs2277489 G A 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.45;AMR_AF=0.84;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7688;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24909281 rs1043839 C T 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7989;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24909362 rs1043831 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7987;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24909475 rs3211056 C G 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7989;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24909731 rs2273628 C T 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.92;LDAF=0.7986;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24910846 rs11628143 C T 100 PASS AA=c;AC=1;AF=0.80;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7978;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24910876 rs11158703 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7979;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24910973 rs11625819 T G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.39;AMR_AF=0.76;AN=2;ASN_AF=0.74;AVGPOST=0.9800;ERATE=0.0018;EUR_AF=0.76;LDAF=0.6674;RSQ=0.9713;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24910974 rs11625820 T A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.39;AMR_AF=0.76;AN=2;ASN_AF=0.73;AVGPOST=0.9809;ERATE=0.0005;EUR_AF=0.76;LDAF=0.6699;RSQ=0.9724;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24975435 rs5249 G T 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9566;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 24975509 rs1885108 T C 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.48;AMR_AF=0.73;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6619;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 24975814 rs5248 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.06;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1165;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 25043671 rs45567233 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1005;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 25102160 rs8192917 C T 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.58;AMR_AF=0.77;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7147;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 30047580 rs2273815 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.72;AMR_AF=0.64;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6551;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 30098349 rs1191601 T C 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.07;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4676;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 30102025 rs1209180 T C 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.07;AMR_AF=0.47;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.58;LDAF=0.4686;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 31061509 rs2273408 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0562;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 31099738 rs229150 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.79;AMR_AF=0.47;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5585;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 31108977 rs2273521 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.48;AMR_AF=0.37;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4141;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 31191772 rs17097130 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2733;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 31355096 rs1045644 C G 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.24;AMR_AF=0.61;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.63;LDAF=0.4674;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 31381351 rs2273171 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.34;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4315;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 31420047 rs3736743 T C 100 PASS AA=t;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1033;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 31549745 rs11621299 T G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8313;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 31582380 rs1315794 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 31582526 rs2273483 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.76;AMR_AF=0.51;AN=2;ASN_AF=0.36;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4934;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 31647241 rs2274201 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.76;AMR_AF=0.57;AN=2;ASN_AF=0.44;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5219;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 32563640 rs8004384 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.96;LDAF=0.9555;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 33015014 rs7150894 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.68;LDAF=0.7440;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 33046388 rs1950703 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.83;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8638;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 33165182 rs3742929 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.79;AMR_AF=0.67;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6806;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 33242863 rs2273163 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.29;AMR_AF=0.75;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5449;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 33292743 rs2239647 A C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.90;AMR_AF=0.68;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 33293122 rs1051695 A G 100 PASS AA=g;AC=1;AF=0.69;AFR_AF=0.91;AMR_AF=0.67;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6920;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 33293531 rs4647899 T A 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.21;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0023;EUR_AF=0.28;LDAF=0.3114;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 34269167 rs12434716 G C 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1325;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 34985645 rs7797 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2837;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 34998705 rs12147949 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2952;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 35037008 rs11156848 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2340;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 35062312 rs12432539 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.69;AMR_AF=0.83;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7934;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 35099099 rs11847568 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.86;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9953;ERATE=0.0004;EUR_AF=0.62;LDAF=0.7035;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.11 +14 35227880 rs61981201 G T 100 PASS AA=.;AC=1;AF=0.30;AFR_AF=0.23;AMR_AF=0.28;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0015;EUR_AF=0.39;LDAF=0.3035;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35228090 rs61981202 G A 100 PASS AA=.;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2000;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35242828 rs2275145 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.47;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 35245748 rs17102726 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2048;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35263983 rs17102745 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0845;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 35468893 rs12433712 T A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.4547;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35477785 rs1712351 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8197;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +14 35480684 rs183879358 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +14 35488309 rs17102982 A G 100 PASS AA=a;AC=1;AF=0.44;AFR_AF=0.32;AMR_AF=0.33;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4415;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35591174 rs1056879 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.51;AMR_AF=0.30;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.3807;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35592445 rs201656808 C G 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0013;RSQ=0.9689;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:0.900:-5.00,0.00,-5.00 +14 35592538 rs941653 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.18;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2431;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35593137 rs45626032 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0013;RSQ=0.9551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.850:-5.00,0.00,-5.00 +14 35871960 rs2233419 G A 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.18;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0011;EUR_AF=0.18;LDAF=0.1248;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35872094 rs2233417 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1015;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35872307 rs3138054 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0025;EUR_AF=0.17;LDAF=0.1001;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 35872926 rs1050851 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0041;EUR_AF=0.22;LDAF=0.1152;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0118;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 36004075 rs1958260 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9964;RSQ=0.9025;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.42,-0.00 +14 36768276 rs4900833 T C 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.65;AMR_AF=0.89;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8715;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 36789729 rs3168891 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.92;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9296;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 36789775 rs2899849 A T 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.46;AMR_AF=0.86;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8236;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 36789795 rs11558802 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.46;AMR_AF=0.86;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8233;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 37051427 rs11624339 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.04;AMR_AF=0.35;AN=2;ASN_AF=0.33;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.35;LDAF=0.2766;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 37051634 rs35669843 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.04;AMR_AF=0.35;AN=2;ASN_AF=0.33;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2770;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.55,-0.00,-5.00 +14 37132769 rs2236007 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.32;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1811;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 37135752 rs12881240 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.32;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1763;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 37135753 rs4904210 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.43;AVGPOST=0.9962;ERATE=0.0013;EUR_AF=0.36;LDAF=0.3428;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 38061742 rs7144658 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.40;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6283;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 38064215 rs79519281 G C 100 PASS AA=g;AC=1;AF=0.45;AFR_AF=0.25;AMR_AF=0.47;AN=2;ASN_AF=0.60;AVGPOST=0.9988;ERATE=0.0002;EUR_AF=0.45;LDAF=0.4471;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 39512122 rs4902326 T A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.67;AMR_AF=0.65;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7463;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 39517925 rs12895000 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=0.9983;ERATE=0.0055;EUR_AF=0.36;LDAF=0.2770;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 39532492 rs55993688 T C 100 PASS AA=-;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.2728;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 39556185 rs8018720 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.87;AMR_AF=0.81;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7793;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 39583481 rs2277458 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.86;AMR_AF=0.80;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7742;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +14 39620936 rs8003807 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.93;AMR_AF=0.88;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.93;LDAF=0.9287;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 39650234 rs2180792 A T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.93;AMR_AF=0.88;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9291;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 39736680 rs7140561 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.96;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.93;LDAF=0.9390;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 39777676 rs1950952 G C 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5400;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 39784965 rs10150863 G T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.69;AMR_AF=0.86;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0013;EUR_AF=0.92;LDAF=0.8662;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 39818145 rs1060878 G A 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=0.9984;ERATE=0.0164;EUR_AF=0.38;LDAF=0.2948;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 42360633 rs6572117 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.67;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6888;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 44974966 rs1959379 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2478;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 44975052 rs3825630 A G 100 PASS AA=a;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2477;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 44975511 rs45478391 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.1312;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 44975606 rs3809429 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2477;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 45481254 rs145006760 A T 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 47314938 rs1388568 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.18;AMR_AF=0.59;AN=2;ASN_AF=0.63;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4444;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50065717 rs2281836 G C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.71;AMR_AF=0.68;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5759;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50092471 rs9989177 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3186;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50094913 rs2985696 C A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.61;AMR_AF=0.69;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5626;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50100386 rs2985687 T C 100 PASS AA=c;AC=1;AF=0.52;AFR_AF=0.44;AMR_AF=0.65;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5186;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50100683 rs2985686 C G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.64;AMR_AF=0.69;AN=2;ASN_AF=0.19;AVGPOST=0.9938;ERATE=0.0011;EUR_AF=0.75;LDAF=0.5680;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +14 50101370 rs2985685 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.45;AMR_AF=0.65;AN=2;ASN_AF=0.19;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.75;LDAF=0.5209;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50101682 rs2985684 C G 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.45;AMR_AF=0.65;AN=2;ASN_AF=0.19;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.75;LDAF=0.5214;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50195679 rs4301946 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9319;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50199375 rs10146753 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9319;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50241258 rs4499141 A C 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9639;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50251369 rs10143621 A G 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9685;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50251888 rs8009346 C T 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9666;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50280688 rs3126195 T A 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.78;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9415;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +14 50298962 rs3100906 T A 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.76;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9351;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50319499 rs3100887 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9673;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50472405 rs6572635 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.34;AMR_AF=0.29;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2536;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50583083 rs11157729 G T 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.20;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2409;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50585248 rs2227276 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.20;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2317;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50600995 rs28565912 A T 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.20;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2336;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50611845 rs2064667 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.84;AMR_AF=0.92;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8761;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50616878 rs2229869 G A 100 PASS AA=g;AC=1;AF=0.56;AFR_AF=0.45;AMR_AF=0.69;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5634;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 50619927 rs11628935 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2701;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 50626836 rs4900992 C T 100 PASS AA=t;AC=2;AF=0.88;AFR_AF=0.84;AMR_AF=0.92;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8757;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50670965 rs1075537 G C 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.84;AMR_AF=0.92;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8816;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50671133 rs12888783 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2760;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 50697878 rs2273326 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.26;AMR_AF=0.20;AN=2;ASN_AF=0.42;AVGPOST=0.9911;ERATE=0.0007;EUR_AF=0.15;LDAF=0.2533;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.71,-0.01,-5.00 +14 50732042 rs12432673 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4086;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50750577 rs12433038 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.34;AMR_AF=0.46;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5059;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50769717 rs2297995 G A 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5740;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50778816 rs2275591 A C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.54;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5686;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +14 50788213 rs2275592 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.54;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5659;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50799126 rs7161563 G C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.58;AMR_AF=0.57;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5768;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 50808802 rs7142237 G T 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7199;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 51057727 rs1060197 G A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8067;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51058234 rs2934684 G T 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8062;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51107452 rs871643 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.82;AMR_AF=0.80;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7742;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51192659 rs1983764 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.05;AMR_AF=0.24;AN=2;ASN_AF=0.32;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.36;LDAF=0.2591;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51204996 rs11376 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.78;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.49;LDAF=0.5036;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51206021 rs3015485 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 51223789 rs2073347 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.87;AMR_AF=0.85;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7687;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 51224374 rs12882191 T G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.91;AMR_AF=0.86;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7874;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 51224417 rs2236316 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1851;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 51228655 rs12883882 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1785;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 51237701 rs17793018 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.25;AMR_AF=0.62;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5992;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51239067 rs8020503 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 51355517 rs10144606 C A 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.63;AMR_AF=0.57;AN=2;ASN_AF=0.47;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.65;LDAF=0.5872;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 51368610 rs28564871 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3012;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51370784 rs4901064 G C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3012;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51371121 rs4901065 C T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3012;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51371130 rs11157780 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.37;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2729;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51372103 rs1042266 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.37;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2728;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51383432 rs2075643 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2523;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51443968 rs11627694 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0151;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 51446216 rs2275462 T G 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.42;AMR_AF=0.67;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0016;EUR_AF=0.56;LDAF=0.5859;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 51475794 rs2297889 A T 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.71;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.75;LDAF=0.6892;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 51491956 rs11848681 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.32;AMR_AF=0.36;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0019;EUR_AF=0.41;LDAF=0.4322;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 51716188 rs7161242 T G 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7111;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 51716467 rs7160810 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7367;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 52182081 rs731715 T A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.68;AMR_AF=0.66;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52186966 rs2277495 G A 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.08;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.33;LDAF=0.2432;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52470889 rs1151574 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.27;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1344;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 52478315 rs1051069 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.78;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9985;ERATE=0.0062;EUR_AF=0.52;LDAF=0.6759;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 52496387 rs2273430 C A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9310;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52496407 rs2273431 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.70;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8848;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52507429 rs3742536 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.94;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8355;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52509101 rs1982963 G A 100 PASS AA=g;AC=2;AF=0.83;AFR_AF=0.92;AMR_AF=0.78;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8332;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52509483 rs56834750 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.70;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9874;ERATE=0.0186;EUR_AF=0.65;LDAF=0.6863;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52509484 rs4901186 G A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.71;AMR_AF=0.68;AN=2;ASN_AF=0.73;AVGPOST=0.9855;ERATE=0.0115;EUR_AF=0.66;LDAF=0.6957;RSQ=0.9781;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52520368 rs2101919 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.45;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5809;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52520853 rs904059 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52535648 rs3920038 G T 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.49;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8158;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 52906081 rs2249922 T G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.72;AMR_AF=0.45;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5475;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 52907353 rs1952254 C T 100 PASS AA=c;AC=1;AF=0.51;AFR_AF=0.55;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5078;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 52937255 rs7155490 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.22;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2239;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 53325090 rs6572868 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.64;AMR_AF=0.86;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8071;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 53326454 rs3818453 C A 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.39;AMR_AF=0.84;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7308;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 53345266 rs2357946 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.54;AMR_AF=0.85;AN=2;ASN_AF=0.77;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.91;LDAF=0.7824;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 53345378 rs2357947 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.44;AMR_AF=0.84;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.91;LDAF=0.7449;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 53525392 rs915436 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 54417522 rs17563 A G 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.20;AMR_AF=0.37;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3724;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 54418986 rs2761880 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.54;AMR_AF=0.80;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0024;EUR_AF=0.98;LDAF=0.7786;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0093;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 54875514 rs2179896 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.73;AMR_AF=0.68;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7061;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 55218161 rs2295820 A C 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0023;EUR_AF=0.55;LDAF=0.3656;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 55255673 rs11431 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.71;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.53;LDAF=0.5928;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 55493408 rs1201378 T C 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.20;AMR_AF=0.64;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5508;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 55902542 rs7149317 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.80;AMR_AF=0.80;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7275;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 55907172 rs8019270 C G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.79;AMR_AF=0.75;AN=2;ASN_AF=0.64;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6756;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 56103882 rs10483647 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.27;AVGPOST=0.9990;ERATE=0.0007;EUR_AF=0.23;LDAF=0.1800;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 56126456 rs7160678 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 57070501 rs10782433 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.94;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9122;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 57075920 rs17776256 G T 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1010;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 57082648 rs2275024 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.77;AMR_AF=0.45;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.57;LDAF=0.5524;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 57083897 rs2275023 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.39;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2276;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 57099859 rs1041316 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.79;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=0.9976;ERATE=0.0096;EUR_AF=0.70;LDAF=0.7009;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 57101682 rs913742 A G 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.54;AMR_AF=0.74;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7002;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 57271127 rs2277499 G T 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.24;AMR_AF=0.44;AN=2;ASN_AF=0.22;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3082;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +14 57866623 rs2152360 A G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.10;AMR_AF=0.86;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.6960;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 57876265 rs11620639 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.49;AMR_AF=0.92;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8263;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 57938124 rs1152531 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.20;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6787;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 57938260 rs1152530 T C 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.60;AMR_AF=0.97;AN=2;ASN_AF=0.96;AVGPOST=0.9874;ERATE=0.0281;EUR_AF=0.93;LDAF=0.8710;RSQ=0.9666;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 57948380 rs1152522 T C 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.23;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.75;LDAF=0.6856;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 57957664 rs1203338 T A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.65;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9168;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58056257 rs1190313 G T 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.61;AMR_AF=0.52;AN=2;ASN_AF=0.88;AVGPOST=0.9984;ERATE=0.0007;EUR_AF=0.59;LDAF=0.6560;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 58060862 rs17724076 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2650;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 58471445 rs17094192 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.24;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 58563694 rs2273442 G C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.60;AMR_AF=0.47;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4827;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 58600107 rs2180520 T A 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.23;AMR_AF=0.32;AN=2;ASN_AF=0.29;AVGPOST=0.9651;ERATE=0.0357;EUR_AF=0.41;LDAF=0.3281;RSQ=0.9332;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 58605790 rs3829765 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.50;LDAF=0.3716;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58737766 rs8005100 A T 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.81;AMR_AF=0.70;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0089;EUR_AF=0.71;LDAF=0.6503;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58766617 rs1957038 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6453;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58771632 rs7155580 A G 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.83;AMR_AF=0.71;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6521;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58838668 rs1051860 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.39;AMR_AF=0.65;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5136;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58838701 rs1051861 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.36;AMR_AF=0.64;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5072;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58869510 rs7153357 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58917454 rs1748971 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9961;RSQ=0.9621;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58920240 rs1748975 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.05,-0.00 +14 58923395 rs1743721 G A 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9757;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58932772 rs1743716 A G 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58937416 rs1748986 T C 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9755;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 58953746 rs1617510 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 59105188 rs2003021 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.74;AMR_AF=0.57;AN=2;ASN_AF=0.38;AVGPOST=0.9938;ERATE=0.0009;EUR_AF=0.53;LDAF=0.5463;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 59112732 rs17832998 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.24;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2705;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 59787325 rs45610932 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0398;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 59789586 rs8021976 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 59789727 rs8022614 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3579;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 59789892 rs17096074 G T 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.85 +14 59790813 rs6573250 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.73;AMR_AF=0.63;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 59797213 rs41285510 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0388;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 59797235 rs941884 A G 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.51;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6627;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 59797373 rs28927674 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0402;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 59827588 rs181920728 T C 100 PASS AA=T;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0028;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 59835350 rs41285512 A C 100 PASS AA=a;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0389;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 59931697 rs3742646 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9823;ERATE=0.0016;EUR_AF=0.06;LDAF=0.0477;RSQ=0.8495;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +14 59931840 rs3742645 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.57;AMR_AF=0.48;AN=2;ASN_AF=0.20;AVGPOST=0.9400;ERATE=0.0037;EUR_AF=0.40;LDAF=0.3993;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +14 59939727 rs8660 T C 100 PASS AA=c;AC=2;AF=0.46;AFR_AF=0.76;AMR_AF=0.51;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4617;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 59939804 rs1046701 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0389;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 59946094 rs1752435 G C 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.17;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 59946099 rs1752436 T C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.75;AMR_AF=0.51;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4598;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +14 59951278 rs10140007 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.52;AMR_AF=0.45;AN=2;ASN_AF=0.17;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.34;LDAF=0.3554;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.87,-0.06 +14 59954385 rs76472382 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0298;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 59965429 rs1271507 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.68;AMR_AF=0.46;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3917;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 60063472 rs6573275 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9854;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 60921673 rs1262175 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 60923783 rs11625921 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9442;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 60928201 rs1956549 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.59;AMR_AF=0.86;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8222;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 60935281 rs12878738 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.69;AN=2;ASN_AF=0.33;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5587;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 60976537 rs33912345 C A 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.04;AMR_AF=0.60;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.3867;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +14 61180657 rs3742636 T G 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.56;AMR_AF=0.72;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.74;LDAF=0.6662;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 61278684 rs2020892 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.42;AN=2;ASN_AF=0.09;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2174;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 61445967 rs7142228 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 61449328 rs976272 T A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.87;AMR_AF=0.88;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8807;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 61497147 rs1465146 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 61497285 rs1465145 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 61509924 rs2296921 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.87;AMR_AF=0.87;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 61747644 rs3196765 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.61;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.86;LDAF=0.7847;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +14 61997226 rs1088680 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.30;AMR_AF=0.86;AN=2;ASN_AF=0.69;AVGPOST=0.9983;ERATE=0.0025;EUR_AF=0.88;LDAF=0.6972;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 62213848 rs2057482 T C 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.63;AMR_AF=0.82;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7879;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 62233569 rs73324981 A T 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.25;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1750;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 62550877 rs2353778 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.33;AMR_AF=0.63;AN=2;ASN_AF=0.53;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5140;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 63174616 rs7161127 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.75;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9319;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 63174960 rs4902176 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2533;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 63269317 rs12588427 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4716;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 63735862 rs10133216 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64375985 rs2275018 G T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.48;AMR_AF=0.72;AN=2;ASN_AF=0.48;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6017;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64408852 rs33976862 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.21;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0995;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64421392 rs1255874 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.62;AMR_AF=0.73;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6673;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +14 64457079 rs1255907 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.71;AMR_AF=0.47;AN=2;ASN_AF=0.51;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.44;LDAF=0.5251;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64469828 rs17751301 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0322;RSQ=0.9781;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64476680 rs7146588 T A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.66;AMR_AF=0.32;AN=2;ASN_AF=0.24;AVGPOST=0.9968;ERATE=0.0014;EUR_AF=0.18;LDAF=0.3264;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64491695 rs4902264 T C 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.34;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.87;LDAF=0.7187;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64494278 rs10151127 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.50;AMR_AF=0.89;AN=2;ASN_AF=0.87;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7992;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 64496749 rs4027402 C T 100 PASS AA=c;AC=1;AF=0.72;AFR_AF=0.35;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7226;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64496763 rs11850509 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0791;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64497930 rs4027404 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.40;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=0.9716;ERATE=0.0180;EUR_AF=0.80;LDAF=0.6875;RSQ=0.9553;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64498037 rs4027405 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.76;AMR_AF=0.90;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8649;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 64518321 rs11628107 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0340;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64519035 rs1890908 A G 100 PASS AA=a;AC=2;AF=0.89;AFR_AF=0.85;AMR_AF=0.91;AN=2;ASN_AF=0.88;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.91;LDAF=0.8881;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 64519455 rs3829767 A G 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.33;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7122;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64519709 rs34843668 A T 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0335;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64520416 rs10138253 G A 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.38;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.86;LDAF=0.7261;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64522674 rs8010911 G C 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.39;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7274;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64522843 rs8010699 A G 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.39;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7279;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64532107 rs1255972 A G 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.39;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=0.9988;ERATE=0.0016;EUR_AF=0.86;LDAF=0.7274;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64537325 rs79574442 A C 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0389;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64537657 rs1255964 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.85;AMR_AF=0.91;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8893;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 64554517 rs17101637 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.21;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0978;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64565582 rs9323444 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.39;AN=2;ASN_AF=0.53;AVGPOST=0.9984;ERATE=0.0074;EUR_AF=0.39;LDAF=0.4201;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64580297 rs145218296 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0115;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64604595 rs12881815 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.05;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0227;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 64606654 rs17825431 G C 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1157;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64612845 rs11629287 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.58;AMR_AF=0.39;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4460;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64612858 rs10151658 C A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.91;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6129;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64637147 rs7161192 C A 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.34;AMR_AF=0.30;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0025;EUR_AF=0.33;LDAF=0.3895;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64676098 rs1152592 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.87;AMR_AF=0.43;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5736;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64681193 rs1152590 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.84;AMR_AF=0.41;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5631;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64700045 rs944050 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.04;LDAF=0.1713;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64724051 rs1256049 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.10;AMR_AF=0.04;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1279;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 64882380 rs1950902 A G 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.85;AMR_AF=0.90;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8098;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 64908845 rs2236225 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.21;AMR_AF=0.53;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0023;EUR_AF=0.43;LDAF=0.3464;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 64909151 rs2236224 G A 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3120;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 64935720 rs1256149 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 64988830 rs45512391 C A 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.22;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0680;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 65008251 rs1063391 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.44;AMR_AF=0.70;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6787;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 65016702 rs7156953 T G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.82;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8329;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +14 65031534 rs6573560 C T 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.72;AMR_AF=0.60;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6102;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 65031572 rs4902293 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.31;AMR_AF=0.54;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4896;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 65253749 rs72724498 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0091;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 65268451 rs72724501 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0095;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 65406402 rs17881652 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0078;RSQ=0.9421;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 65507654 rs45563031 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.0777;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 66028446 rs3783711 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.74;AMR_AF=0.67;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.7331;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 66028505 rs3825639 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.74;AMR_AF=0.67;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.64;LDAF=0.7331;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 66096297 rs35137471 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0276;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 67147816 rs3759753 T C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.67;AMR_AF=0.40;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3876;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 67291154 rs3784074 A G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.73;AMR_AF=0.35;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3844;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 67291186 rs3784075 T C 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.61;AMR_AF=0.26;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.3172;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 67769177 rs10146663 A C 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.42;AMR_AF=0.20;AN=2;ASN_AF=0.43;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.03;LDAF=0.2497;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 67786924 rs3809387 A G 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.41;AMR_AF=0.20;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.2505;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.69,-0.00 +14 67812474 rs3818467 T C 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.41;AMR_AF=0.20;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.2500;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 67812631 rs2274336 A G 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.41;AMR_AF=0.20;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.2500;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 67814201 rs28422832 T C 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.41;AMR_AF=0.20;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.2496;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +14 67819602 rs8020850 T C 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.48;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.06;LDAF=0.2971;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 67847511 rs10132093 G A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.72;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3900;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 67849139 rs2296561 A T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.72;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3903;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 67940666 rs74338680 G C 100 PASS AA=g;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.15;AVGPOST=0.9931;ERATE=0.0015;EUR_AF=0.04;LDAF=0.0833;RSQ=0.9651;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 68041124 rs1555400 G C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.53;AMR_AF=0.59;AN=2;ASN_AF=0.47;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5181;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.37 +14 68042496 rs4902491 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.64;AMR_AF=0.84;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7396;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +14 68042574 rs11158685 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.36;AMR_AF=0.55;AN=2;ASN_AF=0.47;AVGPOST=0.9947;ERATE=0.0041;EUR_AF=0.50;LDAF=0.4683;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 68044005 rs4902492 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=0.89;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9442;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.69,-0.00 +14 68048759 rs45451797 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0174;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 68048764 rs3809389 T C 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0524;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-3.12,-0.00,-5.00 +14 68050687 rs76327566 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0518;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 68053977 rs6573783 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9862;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 68117421 rs10483802 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.14;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1343;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 68118132 rs15493 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.14;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1330;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 68234539 rs3742883 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.85;AMR_AF=0.94;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9173;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 68247084 rs2273161 C T 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0002;LDAF=0.0295;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 68248281 rs2235962 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.51;AMR_AF=0.72;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6654;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 68264867 rs12891164 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.72;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.62;LDAF=0.7573;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 68273430 rs181576 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.62;LDAF=0.7646;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 68290369 rs34355633 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0089;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 68758575 rs10129646 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.37;AMR_AF=0.06;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.1237;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 69376623 rs3742891 G A 100 PASS AA=g;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2860;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 69376658 rs743128 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.98;AMR_AF=0.76;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.8348;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 69376775 rs872810 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2860;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 69378863 rs2070280 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2870;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 69392264 rs4899272 T G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.77;AMR_AF=0.74;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7614;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +14 69445646 rs4902685 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9837;ERATE=0.0007;EUR_AF=0.96;LDAF=0.9735;RSQ=0.7703;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-2.96,-0.46,-0.18 +14 69695792 rs3742899 G A 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.79;AMR_AF=0.74;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7537;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 69703158 rs3211166 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.06;AMR_AF=0.52;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4419;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 69704553 rs8007859 G T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.87;AMR_AF=0.75;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7715;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 69795199 rs12879377 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.14;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2036;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 69798284 rs1147461 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.19;AMR_AF=0.56;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4608;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 69799892 rs1275677 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.71;AMR_AF=0.48;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5073;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 70418881 rs3742909 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2487;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 70477508 rs3825739 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 70477695 rs34311408 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 70478175 rs59684948 A T 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.20;AVGPOST=0.9897;ERATE=0.0551;EUR_AF=0.15;LDAF=0.1344;RSQ=0.9700;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 70478183 rs57609901 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2148;RSQ=0.9998;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 70634087 rs2114024 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 70924237 rs3751520 C A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.33;AMR_AF=0.30;AN=2;ASN_AF=0.33;AVGPOST=0.9870;ERATE=0.0109;EUR_AF=0.26;LDAF=0.3031;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 70924249 rs3751521 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.58;AMR_AF=0.43;AN=2;ASN_AF=0.78;AVGPOST=0.9815;ERATE=0.0116;EUR_AF=0.38;LDAF=0.5384;RSQ=0.9791;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 70924462 rs3751523 A G 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.65;AMR_AF=0.84;AN=2;ASN_AF=0.50;AVGPOST=0.9949;ERATE=0.0088;EUR_AF=0.86;LDAF=0.7165;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +14 70924501 rs8010994 C G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.62;AMR_AF=0.77;AN=2;ASN_AF=0.76;AVGPOST=0.9362;ERATE=0.0851;EUR_AF=0.74;LDAF=0.7146;RSQ=0.8887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.60,-0.00 +14 70924507 rs3751524 A C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.37;AN=2;ASN_AF=0.06;AVGPOST=0.9809;ERATE=0.0111;EUR_AF=0.38;LDAF=0.2191;RSQ=0.9653;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 70924852 rs3829455 A C 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.48;AMR_AF=0.41;AN=2;ASN_AF=0.34;AVGPOST=0.9744;ERATE=0.0153;EUR_AF=0.37;LDAF=0.3933;RSQ=0.9663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 70925257 rs12436346 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9675;ERATE=0.0041;EUR_AF=0.96;LDAF=0.9426;RSQ=0.8160;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +14 70925818 rs2022624 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.93;AMR_AF=0.58;AN=2;ASN_AF=0.84;AVGPOST=0.9677;ERATE=0.0085;EUR_AF=0.54;LDAF=0.7031;RSQ=0.9555;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.64 +14 71109153 rs4902834 C G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=0.79;AVGPOST=0.9539;ERATE=0.0020;EUR_AF=0.78;LDAF=0.8262;RSQ=0.8799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +14 71199452 rs3829955 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.21;LDAF=0.2494;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 71202650 rs4141095 C T 100 PASS AA=T;AC=1;AF=0.85;AFR_AF=0.90;AMR_AF=0.88;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8464;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 71205136 rs113771991 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0293;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 71227913 rs3814872 A C 100 PASS AA=g;AC=1;AF=0.87;AFR_AF=0.89;AMR_AF=0.87;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8688;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 71374702 rs2526882 G A 100 PASS AA=g;AC=2;AF=0.56;AFR_AF=0.62;AMR_AF=0.62;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0013;EUR_AF=0.65;LDAF=0.5588;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +14 71485692 rs1859914 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9956;RSQ=0.9748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 72055468 rs1859643 A C 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.94;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8583;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 72117156 rs8017465 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9412;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 72201985 rs2097887 C A 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.48;AMR_AF=0.49;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.35;LDAF=0.4515;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 72944943 rs2239277 T G 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.31;AMR_AF=0.34;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.34;LDAF=0.4253;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 73198506 rs6574094 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.79;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0010;EUR_AF=0.95;LDAF=0.9264;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 73360842 rs78898062 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0566;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 73404680 rs3815500 A C 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.05;AMR_AF=0.40;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2582;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 73404825 rs2302586 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.05;AMR_AF=0.40;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2582;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 73409683 rs2240980 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.12;AMR_AF=0.47;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3720;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 73425315 rs7144193 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.44;AVGPOST=0.9978;ERATE=0.0075;EUR_AF=0.21;LDAF=0.2842;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 73440864 rs12931 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4616;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 73460113 rs11159002 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.34;AN=2;ASN_AF=0.35;AVGPOST=0.9939;ERATE=0.0093;EUR_AF=0.20;LDAF=0.2293;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 73563842 rs3025762 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0114;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 73664853 rs165932 G T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6315;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 73711394 rs2280792 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2428;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.92 +14 73711513 rs2280793 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2162;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-3.32 +14 73712303 rs2242609 T G 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.40;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2149;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.04,-1.10 +14 73716774 rs177393 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.44;AMR_AF=0.29;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2903;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 73718879 rs2242610 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.70;AVGPOST=0.9957;ERATE=0.0013;EUR_AF=0.36;LDAF=0.5097;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +14 73719323 rs11159011 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0572;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 73720686 rs2293795 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.21;AN=2;ASN_AF=0.43;AVGPOST=0.9971;ERATE=0.0011;EUR_AF=0.08;LDAF=0.1869;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.91,-0.06 +14 73725659 rs2293797 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=0.9991;ERATE=0.0013;EUR_AF=0.08;LDAF=0.1088;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 73727509 rs177389 T G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.86;AMR_AF=0.68;AN=2;ASN_AF=0.71;AVGPOST=0.9947;ERATE=0.0031;EUR_AF=0.50;LDAF=0.6647;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 73727926 rs2242616 G C 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0225;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 73733188 rs78932134 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0409;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 73733410 rs909216 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.37;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.17;LDAF=0.3611;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 73749188 rs114363522 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0087;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 73963383 rs8014577 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.92;AMR_AF=0.79;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.71;LDAF=0.8044;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74004595 rs72738342 C T 100 PASS AA=-;AC=2;AF=0.36;AFR_AF=0.31;AMR_AF=0.48;AN=2;ASN_AF=0.31;AVGPOST=0.8580;ERATE=0.0021;EUR_AF=0.37;LDAF=0.3991;RSQ=0.8266;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.96,-0.05 +14 74036613 rs61987137 G T 100 PASS AA=G;AC=2;AF=0.10;AFR_AF=0.02;AMR_AF=0.09;AN=2;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.22;LDAF=0.0965;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.07,-0.84 +14 74061968 rs2010070 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.8583;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74193427 rs887508 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.74;LDAF=0.8606;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74196686 rs2075025 T C 100 PASS AA=t;AC=1;AF=0.56;AFR_AF=0.61;AMR_AF=0.43;AN=2;ASN_AF=0.86;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5597;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 74203690 rs8007548 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.26;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.1522;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 74206481 rs758774 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.75;LDAF=0.8715;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74340797 rs11159042 A T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.42;AMR_AF=0.51;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5073;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74388908 rs1127392 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.2546;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74401038 rs17094077 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 74404756 rs28927675 T C 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.22;AMR_AF=0.45;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.4269;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74409032 rs740506 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.22;AMR_AF=0.45;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4260;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74413129 rs7146634 C G 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.30;AMR_AF=0.35;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.41;LDAF=0.2842;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74424938 rs3180946 T C 100 PASS AA=T;AC=2;AF=0.22;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.2221;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74428286 rs7141392 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.73;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.87;LDAF=0.8551;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74428445 rs8500 G A 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.18;AMR_AF=0.44;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74441684 rs2074932 G A 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.36;AMR_AF=0.66;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.62;LDAF=0.4795;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74454819 rs12434581 T A 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.08;AMR_AF=0.34;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.2331;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 74711883 rs35435463 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.10;AMR_AF=0.45;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.2929;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 74727661 rs117813701 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.16;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0538;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.44 +14 74753278 rs929449 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9995;RSQ=0.5639;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 74874540 rs11621669 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.28;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4031;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 74874707 rs2884545 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.47;AMR_AF=0.46;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4716;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 74876181 rs12590672 T G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.51;LDAF=0.4785;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 74876355 rs61734850 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.12;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1264;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 74991855 rs862031 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.79;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7134;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 75139936 rs11844127 C G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.57;AMR_AF=0.31;AN=2;ASN_AF=0.25;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3223;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 75245368 rs57404741 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9883;ERATE=0.0211;EUR_AF=0.18;LDAF=0.1896;RSQ=0.9690;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 75248669 rs2287401 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1674;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 75276079 rs957345 C G 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.30;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4713;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 75278302 rs8022046 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.68;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9978;ERATE=0.0023;EUR_AF=0.70;LDAF=0.7178;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75279395 rs2302834 T A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.68;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.70;LDAF=0.7167;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75359670 rs2230237 G A 100 PASS AA=g;AC=1;AF=0.62;AFR_AF=0.97;AMR_AF=0.59;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6243;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 75359730 rs3742788 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.19;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1915;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 75365062 rs2080087 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.97;AMR_AF=0.59;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6243;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 75367740 rs1799900 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.96;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9964;ERATE=0.0064;EUR_AF=0.53;LDAF=0.6178;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 75373245 rs3742784 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1988;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 75386576 rs2286913 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.02;AMR_AF=0.38;AN=2;ASN_AF=0.56;AVGPOST=0.9884;ERATE=0.0096;EUR_AF=0.38;LDAF=0.3481;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 75388183 rs7156590 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.19;AMR_AF=0.40;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3794;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 75412908 rs8005277 A G 100 PASS AA=a;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9990;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75415194 rs2159907 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9925;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75470446 rs175041 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9876;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75483812 rs13712 T C 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.44;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5996;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75485489 rs175053 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75505008 rs3742780 G C 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.21;AMR_AF=0.56;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5247;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75505016 rs175075 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75513883 rs175081 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75537381 rs11546525 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.04;AMR_AF=0.39;AN=2;ASN_AF=0.60;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3849;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 75538217 rs3742778 G T 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.32;AMR_AF=0.56;AN=2;ASN_AF=0.81;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5497;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75544189 rs12589876 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.21;AMR_AF=0.55;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5233;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75551254 rs175487 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9921;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75558152 rs34648344 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0102;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 75574087 rs10146482 C T 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.33;AMR_AF=0.56;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5513;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75580152 rs175464 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75590822 rs8017642 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.22;AMR_AF=0.55;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5252;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75601737 rs12435391 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.21;AMR_AF=0.55;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5233;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 75746690 rs1046117 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.91;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7136;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 76101386 rs12436885 T C 100 PASS AA=t;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1047;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 76156609 rs2303345 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.04;AMR_AF=0.60;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4378;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 76232398 rs2359870 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 76238203 rs45480992 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0950;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 76368544 rs1133834 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.59;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9961;ERATE=0.0589;EUR_AF=0.19;LDAF=0.3823;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 76429868 rs3917200 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.36;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1330;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 76543004 rs17783366 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2025;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 77236380 rs3815550 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.46;AMR_AF=0.53;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5307;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77332367 rs1882844 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.84;AMR_AF=0.92;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9215;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 77336428 rs11625243 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.30;AMR_AF=0.59;AN=2;ASN_AF=0.52;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.68;LDAF=0.5369;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 77492891 rs879027 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4280;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 77686303 rs2287377 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.82;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8428;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +14 77697967 rs375566 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +14 77703057 rs403291 A G 100 PASS AA=g;AC=1;AF=0.79;AFR_AF=0.88;AMR_AF=0.65;AN=2;ASN_AF=0.92;AVGPOST=0.9961;ERATE=0.0024;EUR_AF=0.69;LDAF=0.7876;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77705726 rs4899646 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2221;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77708804 rs61731611 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.11;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1618;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77745193 rs3209079 A C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.87;AMR_AF=0.75;AN=2;ASN_AF=0.96;AVGPOST=0.9957;ERATE=0.0032;EUR_AF=0.84;LDAF=0.8634;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 77746310 rs438931 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.15;AN=2;ASN_AF=0.33;AVGPOST=0.9982;ERATE=0.0171;EUR_AF=0.12;LDAF=0.1849;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77751925 rs2270419 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.88;AMR_AF=0.75;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8675;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 77755221 rs2287387 T G 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.45;AMR_AF=0.36;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4927;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77794283 rs1046428 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.93;AMR_AF=0.74;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8683;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77796641 rs731346 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.91;AMR_AF=0.55;AN=2;ASN_AF=0.55;AVGPOST=0.9978;ERATE=0.0069;EUR_AF=0.58;LDAF=0.6394;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77843363 rs10141114 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.11;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=0.9739;ERATE=0.0015;EUR_AF=0.20;LDAF=0.1462;RSQ=0.9201;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.950:-0.35,-0.41,-0.78 +14 77843814 rs11844594 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.89;AMR_AF=0.54;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4813;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77843971 rs45540040 C T 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1326;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77844265 rs45527334 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1325;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77844592 rs10133824 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1385;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77844869 rs4903576 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.92;AMR_AF=0.54;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4878;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77845121 rs2193595 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.89;AMR_AF=0.54;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4811;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77872979 rs45557839 G C 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.04;AVGPOST=0.9819;ERATE=0.0493;EUR_AF=0.23;LDAF=0.2154;RSQ=0.9603;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77880305 rs10130481 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1375;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77880493 rs8005759 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.08;AMR_AF=0.46;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5087;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77900165 rs34835605 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1289;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 77926011 rs1061629 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.08;AMR_AF=0.46;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5082;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77928476 rs12436593 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.20;AMR_AF=0.47;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5361;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77928525 rs1061638 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.37;AMR_AF=0.57;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6554;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77932017 rs7146595 A C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.11;AMR_AF=0.45;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5137;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77934758 rs4903584 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.11;AMR_AF=0.45;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5138;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77935520 rs7250 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.11;AMR_AF=0.45;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5137;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 77951124 rs3742728 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.16;AMR_AF=0.62;AN=2;ASN_AF=0.95;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.64;LDAF=0.6129;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 77987958 rs2072672 C A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.58;AMR_AF=0.64;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7404;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 78018550 rs201717420 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +14 78018614 rs2178876 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9506;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +14 78023519 rs2272587 C G 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.08;AMR_AF=0.46;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5257;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 78028803 rs2364602 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.55;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8508;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 78174473 rs11159286 A C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.93;AN=2;ASN_AF=0.84;AVGPOST=0.9879;ERATE=0.0088;EUR_AF=0.95;LDAF=0.8868;RSQ=0.9582;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 78183928 rs17106262 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0105;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 78184566 rs176960 C A 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.93;AMR_AF=0.86;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.85;LDAF=0.8364;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 78197365 rs114763 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5891;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 78365612 rs2287650 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.15;AMR_AF=0.55;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3747;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 79176021 rs71414707 A T 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0201;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 79276733 rs4133797 C A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.82;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=0.9596;ERATE=0.0680;EUR_AF=0.88;LDAF=0.8797;RSQ=0.8596;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +14 79454519 rs154325 G C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.77;AMR_AF=0.50;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.4187;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 80669580 rs225014 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.50;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4201;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 81259078 rs4523859 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.10;AMR_AF=0.36;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.38;LDAF=0.2965;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 81574959 rs3783942 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.61;AMR_AF=0.63;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5790;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 81575005 rs3783941 C A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.60;AMR_AF=0.63;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0013;EUR_AF=0.68;LDAF=0.5780;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 81610583 rs1991517 G C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8917;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 81744736 rs3813535 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.81;AMR_AF=0.81;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7642;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 86088056 rs10141266 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 88401213 rs421262 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9387;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 88407734 rs448805 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9388;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 88407875 rs421466 T A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9388;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 88407888 rs398607 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.61;AMR_AF=0.40;AN=2;ASN_AF=0.22;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4275;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 88407917 rs12432149 G A 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.18;AMR_AF=0.59;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5073;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 88411947 rs367327 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9396;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 88414211 rs398076 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.43;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3502;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 88431898 rs12888666 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3539;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 88454910 rs2289511 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.54;AMR_AF=0.66;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6398;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 88477413 rs6574978 C T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.78;AMR_AF=0.81;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8030;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 88693676 rs3825678 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.19;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3181;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 88693683 rs3825677 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3414;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 88693725 rs2277524 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.45;AMR_AF=0.19;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 88729931 rs761971 G T 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.60;AMR_AF=0.75;AN=2;ASN_AF=0.71;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6699;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.86,-0.00 +14 88792816 rs3742690 T G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.87;AMR_AF=0.91;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.97;LDAF=0.8898;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 88852166 rs4904448 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.05;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.43;LDAF=0.2137;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +14 88895669 rs386579 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 88899441 rs2273172 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0896;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 88934651 rs366476 G A 100 PASS AA=g;AC=1;AF=0.48;AFR_AF=0.43;AMR_AF=0.52;AN=2;ASN_AF=0.59;AVGPOST=0.9970;ERATE=0.0658;EUR_AF=0.42;LDAF=0.4845;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 89042180 rs1469602 T G 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5192;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 89063167 rs2297124 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.80;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8830;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 89105287 rs1152383 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.34;AMR_AF=0.54;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.72;LDAF=0.5371;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 89258613 rs77336257 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.19;AMR_AF=0.08;AN=2;ASN_AF=0.25;AVGPOST=0.9950;ERATE=0.0004;EUR_AF=0.02;LDAF=0.1277;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.150:-0.48,-0.48,-0.48 +14 90398907 rs8778 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2103;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90416517 rs77780222 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90420298 rs3736860 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90429749 rs3825663 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.80;AMR_AF=0.14;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.2276;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90455460 rs35972056 G A 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.43;AMR_AF=0.11;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1444;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90650684 rs35931687 C T 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0368;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90729738 rs143172121 A G 100 PASS AA=A;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0028;RSQ=0.9692;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90729984 rs8015510 C T 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.42;AMR_AF=0.61;AN=2;ASN_AF=0.48;AVGPOST=0.9992;ERATE=0.0013;EUR_AF=0.59;LDAF=0.5252;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90730071 rs4811 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.42;AMR_AF=0.61;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5269;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90735707 rs3742673 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.57;AMR_AF=0.47;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5714;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 90738567 rs4904667 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.14;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1860;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 90744672 rs10184 G A 100 PASS AA=g;AC=1;AF=0.34;AFR_AF=0.09;AMR_AF=0.31;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.40;LDAF=0.3441;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 90745422 rs3737035 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.09;AMR_AF=0.33;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3501;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 90767607 rs3825661 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6883;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 90767746 rs3742669 C A 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.64;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6951;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 90767759 rs3742668 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.19;AMR_AF=0.33;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3724;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 91123575 rs3742660 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.87;AMR_AF=0.85;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8899;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 91161862 rs10146731 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.55;AMR_AF=0.65;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6325;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 91252545 rs17794971 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.13;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0359;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 91282470 rs943700 G A 100 PASS AA=g;AC=1;AF=0.30;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9806;ERATE=0.0015;EUR_AF=0.40;LDAF=0.3011;RSQ=0.9663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.69,-0.10 +14 91626666 rs10142502 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0146;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 91633749 rs12436409 G A 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.39;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1106;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 91636395 rs4900071 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1954;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 91636532 rs4900072 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1954;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 91681888 rs34424078 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0662;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 91681921 rs45465092 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.26;AMR_AF=0.17;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1667;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 91739081 rs941920 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.99;AMR_AF=0.81;AN=2;ASN_AF=0.65;AVGPOST=0.9872;ERATE=0.0022;EUR_AF=0.89;LDAF=0.8335;RSQ=0.9679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 91755563 rs189215037 C T 100 PASS AA=C;AC=1;AF=0.0014;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9992;ERATE=0.0012;LDAF=0.0017;RSQ=0.8134;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 91763637 rs3742656 C T 100 PASS AA=c;AC=1;AF=0.54;AFR_AF=0.69;AMR_AF=0.51;AN=2;ASN_AF=0.44;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5428;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 91773494 rs1970911 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.26;AVGPOST=0.9915;ERATE=0.0005;EUR_AF=0.11;LDAF=0.1617;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 91773568 rs1970912 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.54;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=0.9940;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5217;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 91883967 rs3742654 G T 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.9758;ERATE=0.0028;EUR_AF=0.47;LDAF=0.3916;RSQ=0.9605;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 91927717 rs8006817 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.57;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5192;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 91937143 rs10873409 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.57;AMR_AF=0.49;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5206;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 91942342 rs10145724 T A 100 PASS AA=A;AC=1;AF=0.92;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9145;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92084004 rs1620238 C G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.65;AMR_AF=0.81;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8035;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92088016 rs1296082 G A 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.64;AMR_AF=0.81;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8016;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92102759 rs17127484 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2340;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 92159558 rs72629402 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 92268615 rs2402073 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=1.00;LDAF=0.9794;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 92280037 rs10134181 T C 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.21;AMR_AF=0.56;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4589;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +14 92336775 rs929608 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.22;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4794;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92347680 rs2430347 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.77;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7966;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 92441066 rs1051340 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2743;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92454604 rs2273182 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2738;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92473943 rs3818095 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.34;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2812;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92505915 rs17127898 T A 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0412;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92583974 rs201547910 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 92792255 rs941646 G A 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9461;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 92909073 rs941650 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.88;AMR_AF=0.81;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8523;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 93118038 rs3829947 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.45;AMR_AF=0.45;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4337;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 93118198 rs3814830 C T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.35;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2646;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93118668 rs3742717 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.18;AMR_AF=0.27;AN=2;ASN_AF=0.44;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2745;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93170741 rs2250672 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5622;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93170993 rs9791 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.42;LDAF=0.2980;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93178191 rs1951708 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 93182466 rs1242119 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.05;AMR_AF=0.46;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2527;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93263982 rs17128572 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1051;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93275841 rs17128583 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1111;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93276654 rs1040835 T C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.97;AMR_AF=0.83;AN=2;ASN_AF=0.81;AVGPOST=0.9963;ERATE=0.0064;EUR_AF=0.72;LDAF=0.8155;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93286047 rs17128593 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0978;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93290856 rs2273646 T C 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.70;AMR_AF=0.71;AN=2;ASN_AF=0.75;AVGPOST=0.9803;ERATE=0.0379;EUR_AF=0.62;LDAF=0.6845;RSQ=0.9653;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93290859 rs2273645 C T 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.79;AMR_AF=0.76;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7458;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93398031 rs9658655 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.22;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1554;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93398078 rs9658656 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.22;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1554;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 93401178 rs941581 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.72;AMR_AF=0.72;AN=2;ASN_AF=0.92;AVGPOST=0.9841;ERATE=0.0204;EUR_AF=0.67;LDAF=0.7481;RSQ=0.9711;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-5.00 +14 93693422 rs2905 C T 100 PASS AA=C;AC=2;AF=0.23;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2335;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +14 93994870 rs17094893 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.44;AMR_AF=0.69;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4761;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 93994954 rs28420706 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.51;AMR_AF=0.70;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4943;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 94007022 rs139796738 G C 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 94007075 rs1951716 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.51;AMR_AF=0.73;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 94088587 rs4905081 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.11;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3852;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 94097287 rs2148563 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.81;AMR_AF=0.76;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6627;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 94103602 rs4905082 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.35;AMR_AF=0.69;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.68;LDAF=0.5334;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 94187832 rs1887197 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.43;AMR_AF=0.68;AN=2;ASN_AF=0.34;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.65;LDAF=0.5227;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 94203747 rs117131979 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0160;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94245649 rs4905087 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.62;AMR_AF=0.67;AN=2;ASN_AF=0.31;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.80;LDAF=0.6109;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 94405871 rs10873442 G C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=0.89;AVGPOST=0.9968;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8148;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94417421 rs7147919 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.34;AMR_AF=0.51;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5913;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94417541 rs4277287 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8199;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94417586 rs4483793 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.41;AMR_AF=0.52;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6092;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94419888 rs4243701 A G 100 PASS AA=G;AC=1;AF=0.92;AFR_AF=1.00;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9237;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +14 94505283 rs2295216 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.21;AMR_AF=0.34;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2811;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94510964 rs2273226 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.73;AMR_AF=0.49;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5187;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94524216 rs1056810 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.40;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3291;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94568776 rs2295217 C T 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.25;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2789;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94578162 rs2239644 G T 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.18;AMR_AF=0.24;AN=2;ASN_AF=0.45;AVGPOST=0.9967;ERATE=0.0016;EUR_AF=0.27;LDAF=0.2926;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 94700138 rs4905172 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9825;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 94722764 rs6575403 C A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.84;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5617;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 94732107 rs3827899 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.90;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.36;LDAF=0.5737;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 94756794 rs941590 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.90;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5735;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 94772504 rs1042394 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.16;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.1914;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 94776219 rs2228542 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.24;AMR_AF=0.16;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2071;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 94776221 rs2228541 A C 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.39;AMR_AF=0.65;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5818;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94776387 rs2281520 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.24;AMR_AF=0.16;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2071;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 94780608 rs3748320 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1563;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 94844843 rs1303 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.32;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2267;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94849151 rs20546 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.16;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0312;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94914455 rs10129672 A T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7386;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94929541 rs2224418 G A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.43;AMR_AF=0.75;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6933;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94929660 rs11624364 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.05;AMR_AF=0.24;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1787;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94931016 rs8020984 T G 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.86;AMR_AF=0.78;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7960;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94931105 rs11628722 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.43;AMR_AF=0.75;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6928;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94933473 rs28618118 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3302;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94933640 rs28583900 A T 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3306;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94933695 rs17090921 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3306;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 94935566 rs4900231 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.20;AVGPOST=0.9943;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1502;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 95053849 rs6113 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.59;AMR_AF=0.13;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.09;LDAF=0.2539;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 95053863 rs6118 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.59;AMR_AF=0.13;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.09;LDAF=0.2521;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 95053890 rs6115 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.84;AMR_AF=0.49;AN=2;ASN_AF=0.37;AVGPOST=0.9862;ERATE=0.0090;EUR_AF=0.64;LDAF=0.5869;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95053891 rs6111 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.47;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9888;ERATE=0.0151;EUR_AF=0.07;LDAF=0.2077;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 95054012 rs6119 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.59;AMR_AF=0.13;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2434;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 95054176 rs6112 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.95;AMR_AF=0.50;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6168;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95057270 rs6107 G A 100 PASS AA=a;AC=2;AF=0.64;AFR_AF=0.95;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6367;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95058360 rs6109 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.95;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6367;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95058614 rs2069990 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 95566108 rs66997818 C A 100 PASS AA=c;AC=2;AF=0.85;AFR_AF=0.80;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=0.9904;ERATE=0.0396;EUR_AF=0.79;LDAF=0.8429;RSQ=0.9750;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95906321 rs9671369 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.22;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4315;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95906441 rs910791 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.50;AMR_AF=0.61;AN=2;ASN_AF=0.80;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.48;LDAF=0.5904;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95918625 rs4905318 T C 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.41;AMR_AF=0.56;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4798;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95918741 rs4905319 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5164;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95918745 rs4905320 C T 100 PASS AA=c;AC=2;AF=0.48;AFR_AF=0.40;AMR_AF=0.56;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4798;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95918759 rs4905321 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.40;AMR_AF=0.56;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4798;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 95921741 rs4905324 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.22;AMR_AF=0.63;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4779;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95923670 rs2024863 A C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.75;AMR_AF=0.67;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6114;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 95932223 rs12434921 A G 100 PASS AA=a;AC=2;AF=0.65;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6490;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.72,-0.00 +14 95934128 rs17092460 C T 100 PASS AA=C;AC=2;AF=0.07;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0710;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96157698 rs1748958 A G 100 PASS AA=G;AC=1;AF=0.92;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9155;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 96178688 rs17093294 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0512;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 96707457 rs5224 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8706;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96730142 rs2071084 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.94;AMR_AF=0.83;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.83;LDAF=0.8376;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0075;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 96768380 rs74719094 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0183;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 96771959 rs2289622 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.95;AMR_AF=0.93;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9150;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96777408 rs3759602 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2966;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96777468 rs3759601 G C 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2962;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96781912 rs9323945 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=0.77;AVGPOST=0.9830;ERATE=0.0103;EUR_AF=0.97;LDAF=0.9106;RSQ=0.9317;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96797724 rs1822372 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.95;AMR_AF=0.89;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.98;LDAF=0.8497;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96813703 rs4905483 A T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.95;AMR_AF=0.89;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8492;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96829290 rs12434329 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.20;AMR_AF=0.68;AN=2;ASN_AF=0.44;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.70;LDAF=0.5163;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96852071 rs1545280 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.10;AMR_AF=0.45;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3047;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 96916228 rs10444759 C T 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2765;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 96922752 rs2369679 C G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.96;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8757;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 97022649 rs200844555 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 97299853 rs2145635 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2771;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 97321689 rs2230532 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4580;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 99182535 rs17097718 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0669;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 99876505 rs1047351 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.64;AMR_AF=0.62;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.45;LDAF=0.5585;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 99929801 rs2273386 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.33;AMR_AF=0.57;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4744;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 100111565 rs12893887 G A 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.19;AMR_AF=0.33;AN=2;ASN_AF=0.36;AVGPOST=0.9787;ERATE=0.0020;EUR_AF=0.17;LDAF=0.2562;RSQ=0.9566;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-2.99,-0.47,-0.18 +14 100123487 rs36033161 T C 100 PASS AA=N;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.30;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2431;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100125721 rs7145262 C T 100 PASS AA=c;AC=1;AF=0.32;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.26;AVGPOST=0.9709;ERATE=0.0015;EUR_AF=0.45;LDAF=0.3284;RSQ=0.9533;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.12,-0.62 +14 100158241 rs4900442 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.31;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4433;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 100317376 rs72708401 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1792;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 100331876 rs11160553 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2079;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 100363672 rs2273706 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.60;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9745;ERATE=0.0259;EUR_AF=0.39;LDAF=0.4778;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.89,-0.06 +14 100375707 rs34198557 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2459;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100380948 rs2250718 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.93;AMR_AF=0.63;AN=2;ASN_AF=0.55;AVGPOST=0.9992;ERATE=0.0015;EUR_AF=0.59;LDAF=0.6639;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 100384232 rs2273704 A C 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.59;AMR_AF=0.44;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4296;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100595880 rs74085121 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0640;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100596063 rs74085136 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0640;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.06,-0.00,-5.00 +14 100615665 rs4905936 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.86;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9161;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 100625902 rs7157599 C T 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.88;AMR_AF=0.76;AN=2;ASN_AF=0.74;AVGPOST=0.9706;ERATE=0.0011;EUR_AF=0.70;LDAF=0.7548;RSQ=0.9422;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +14 100792093 rs9324019 C G 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.36;AMR_AF=0.53;AN=2;ASN_AF=0.57;AVGPOST=0.9973;ERATE=0.0024;EUR_AF=0.35;LDAF=0.4411;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 100792482 rs1951519 C A 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.50;AMR_AF=0.82;AN=2;ASN_AF=0.76;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.75;LDAF=0.7080;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100795338 rs8015259 G C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.50;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2783;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 100795663 rs10147903 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.36;AMR_AF=0.51;AN=2;ASN_AF=0.58;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4134;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100801423 rs2234532 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9648;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +14 100803364 rs2234530 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.59;AMR_AF=0.82;AN=2;ASN_AF=0.85;AVGPOST=0.9892;ERATE=0.0139;EUR_AF=0.78;LDAF=0.7619;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100808845 rs9453 G A 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.42;AMR_AF=0.84;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7011;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100813077 rs941923 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.44;AMR_AF=0.84;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7084;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 100847523 rs2181170 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 100847707 rs2273800 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.68;AMR_AF=0.48;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.73;LDAF=0.5932;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 100847930 rs3742387 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.66;AMR_AF=0.48;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.73;LDAF=0.5905;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 100996312 rs13065 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.96;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.6522;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 101005215 rs12893951 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.96;AMR_AF=0.62;AN=2;ASN_AF=0.73;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.43;LDAF=0.6586;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-1.17,-0.03,-5.00 +14 101005236 rs12892571 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.96;AMR_AF=0.62;AN=2;ASN_AF=0.73;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.42;LDAF=0.6529;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +14 101012813 rs71421237 C G 100 PASS AA=c;AC=1;AF=0.67;AFR_AF=0.96;AMR_AF=0.70;AN=2;ASN_AF=0.66;AVGPOST=0.9538;ERATE=0.0015;EUR_AF=0.48;LDAF=0.6787;RSQ=0.9320;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 101198417 rs6575799 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9989;RSQ=0.8475;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 101200445 rs17577779 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7493;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 101200645 rs1802710 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.82;AMR_AF=0.65;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7470;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 102322996 rs3742421 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1391;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 102446161 rs3818188 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.02;AMR_AF=0.32;AN=2;ASN_AF=0.46;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.19;LDAF=0.2447;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 102510874 rs2273440 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.66;AMR_AF=0.28;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.19;LDAF=0.3254;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 102514227 rs13749 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.65;AMR_AF=0.28;AN=2;ASN_AF=0.29;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.14;LDAF=0.3156;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 102515015 rs1004903 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.54;AMR_AF=0.26;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0034;EUR_AF=0.17;LDAF=0.2879;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 102549839 rs7155973 A G 100 PASS AA=N;AC=2;AF=0.94;AFR_AF=0.87;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.9351;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 102550803 rs4947 G A 100 PASS AA=g;AC=2;AF=0.70;AFR_AF=0.29;AMR_AF=0.80;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.85;LDAF=0.6979;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 102568296 rs10873531 G A 100 PASS AA=g;AC=2;AF=0.70;AFR_AF=0.27;AMR_AF=0.82;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.7021;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 102568367 rs8005905 T A 100 PASS AA=t;AC=2;AF=0.81;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.90;LDAF=0.8058;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 102792386 rs7158731 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.71;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3725;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 102792631 rs7158139 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.71;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.15;LDAF=0.3716;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 102798055 rs1543540 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.27;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.06;LDAF=0.1661;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 102808330 rs12590618 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.51;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3190;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 102814945 rs7012 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3098;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 102918686 rs1190554 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.80;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.62;LDAF=0.6950;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 103342072 rs142069424 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0005;RSQ=0.7725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.900:-5.00,0.00,-5.00 +14 103397055 rs1190233 G C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.69;AVGPOST=0.8885;ERATE=0.0371;EUR_AF=0.68;LDAF=0.6467;RSQ=0.8217;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.76,-0.08 +14 103414179 rs12886225 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.48;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.37;LDAF=0.3391;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 103442209 rs35953480 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0311;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 103566904 rs1057640 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.36;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2294;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 103568729 rs10142200 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.62;AVGPOST=0.9819;ERATE=0.0016;EUR_AF=0.38;LDAF=0.5124;RSQ=0.9725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-1.53,-0.01,-5.00 +14 103574714 rs10144543 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9924;ERATE=0.0024;EUR_AF=0.39;LDAF=0.4977;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 103576395 rs729185 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9625;ERATE=0.0188;EUR_AF=0.14;LDAF=0.3193;RSQ=0.9392;SNPSOURCE=LOWCOV,EXOME;THETA=0.0119;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +14 103576415 rs729184 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.60;AMR_AF=0.71;AN=2;ASN_AF=0.71;AVGPOST=0.9456;ERATE=0.0238;EUR_AF=0.91;LDAF=0.7453;RSQ=0.8974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0159;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +14 103576443 rs729183 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.88;AMR_AF=0.52;AN=2;ASN_AF=0.60;AVGPOST=0.9624;ERATE=0.0003;EUR_AF=0.22;LDAF=0.5202;RSQ=0.9548;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +14 103593950 rs1132339 C G 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.43;AMR_AF=0.54;AN=2;ASN_AF=0.54;AVGPOST=0.9749;ERATE=0.0036;EUR_AF=0.60;LDAF=0.5356;RSQ=0.9627;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-1.82,-0.01,-5.00 +14 103596488 rs2234131 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.37;AMR_AF=0.57;AN=2;ASN_AF=0.62;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5466;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 103596609 rs2234133 T A 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.37;AMR_AF=0.57;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5475;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 103599665 rs201106002 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 103923475 rs2273699 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.43;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=0.9848;ERATE=0.0272;EUR_AF=0.38;LDAF=0.3261;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 103931879 rs1116095 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.43;AMR_AF=0.31;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3711;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 103933556 rs8010247 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.43;AMR_AF=0.31;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3712;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 103934488 rs10137161 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 103986255 rs1803283 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=0.9934;ERATE=0.0057;EUR_AF=0.64;LDAF=0.6445;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 103988180 rs1136165 G T 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.58;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.8969;ERATE=0.0144;EUR_AF=0.62;LDAF=0.6594;RSQ=0.8190;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +14 103996396 rs2765037 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9916;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 104027557 rs11625397 C T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.59;AMR_AF=0.60;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5781;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104029378 rs2274268 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.30;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=0.9712;ERATE=0.0024;EUR_AF=0.38;LDAF=0.2705;RSQ=0.9484;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.26,-0.00,-2.47 +14 104139570 rs11160757 G T 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.78;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9301;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104165753 rs861539 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.09;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2500;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104167075 rs861537 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.40;AMR_AF=0.60;AN=2;ASN_AF=0.43;AVGPOST=0.9977;ERATE=0.0026;EUR_AF=0.70;LDAF=0.5466;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104193099 rs2295151 C G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.91;AMR_AF=0.59;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5768;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 104194196 rs1535100 C G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.84;AMR_AF=0.80;AN=2;ASN_AF=0.96;AVGPOST=0.9937;ERATE=0.0123;EUR_AF=0.93;LDAF=0.8972;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104194278 rs1535099 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.57;AMR_AF=0.50;AN=2;ASN_AF=0.37;AVGPOST=0.9740;ERATE=0.0227;EUR_AF=0.62;LDAF=0.5221;RSQ=0.9616;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104441925 rs10147923 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.35;AN=2;ASN_AF=0.33;AVGPOST=0.9972;ERATE=0.0030;EUR_AF=0.37;LDAF=0.3350;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +14 104452640 rs10143389 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.27;AMR_AF=0.33;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3231;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104465037 rs10133836 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9438;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 104470661 rs200657917 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104470686 rs28391043 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.27;AMR_AF=0.31;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104481016 rs7150795 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.65;AMR_AF=0.85;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8922;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 104481083 rs11160779 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.27;AMR_AF=0.31;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104518453 rs7150461 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.24;AMR_AF=0.47;AN=2;ASN_AF=0.58;AVGPOST=0.9952;ERATE=0.0029;EUR_AF=0.58;LDAF=0.4822;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.95,-0.00,-5.00 +14 104559852 rs941953 T C 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.64;AMR_AF=0.35;AN=2;ASN_AF=0.38;AVGPOST=0.9687;ERATE=0.0234;EUR_AF=0.17;LDAF=0.3622;RSQ=0.9539;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 104559919 rs1770984 T C 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.75;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3977;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 104559922 rs1744284 C G 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.75;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.19;LDAF=0.3971;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 104561998 rs1770983 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.77;AMR_AF=0.82;AN=2;ASN_AF=0.89;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7966;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 104563932 rs1465163 G T 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.26;AMR_AF=0.22;AN=2;ASN_AF=0.38;AVGPOST=0.9970;ERATE=0.0005;EUR_AF=0.06;LDAF=0.2149;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.24,-0.03 +14 104571826 rs1744300 A G 100 PASS AA=g;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9684;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.59,-0.01 +14 104573690 rs1744301 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9681;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.02,-0.00 +14 104575531 rs1744302 C G 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.36;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9870;ERATE=0.0133;EUR_AF=0.22;LDAF=0.3068;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 104639351 rs117777904 C T 100 PASS AA=c;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0135;RSQ=0.9458;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 104640011 rs2275593 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.04;AMR_AF=0.31;AN=2;ASN_AF=0.38;AVGPOST=0.9875;ERATE=0.0016;EUR_AF=0.29;LDAF=0.2632;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-3.38,-0.00,-5.00 +14 104641612 rs4906422 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.32;AN=2;ASN_AF=0.44;AVGPOST=0.9875;ERATE=0.0007;EUR_AF=0.28;LDAF=0.2933;RSQ=0.9796;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 104642341 rs2487304 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.83;AMR_AF=0.74;AN=2;ASN_AF=0.79;AVGPOST=0.9845;ERATE=0.0006;EUR_AF=0.71;LDAF=0.7618;RSQ=0.9669;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +14 104642422 rs3742947 A G 100 PASS AA=a;AC=1;AF=0.30;AFR_AF=0.14;AMR_AF=0.33;AN=2;ASN_AF=0.45;AVGPOST=0.9829;ERATE=0.0016;EUR_AF=0.29;LDAF=0.3053;RSQ=0.9715;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.08,-0.77 +14 104643409 rs2487303 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.84;AMR_AF=0.74;AN=2;ASN_AF=0.78;AVGPOST=0.9776;ERATE=0.0019;EUR_AF=0.70;LDAF=0.7564;RSQ=0.9528;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 104644147 rs11621644 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.46;AVGPOST=0.9316;ERATE=0.0087;EUR_AF=0.34;LDAF=0.3285;RSQ=0.8948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.32,-0.28 +14 105054260 rs9788527 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.67;AMR_AF=0.23;AN=2;ASN_AF=0.57;AVGPOST=0.9970;ERATE=0.0034;EUR_AF=0.09;LDAF=0.3699;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +14 105054934 rs12880814 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.72;AMR_AF=0.23;AN=2;ASN_AF=0.57;AVGPOST=0.9914;ERATE=0.0011;EUR_AF=0.10;LDAF=0.3835;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:0.950:-0.48,-0.48,-0.48 +14 105070791 rs3803313 G T 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.67;AMR_AF=0.61;AN=2;ASN_AF=0.38;AVGPOST=0.9939;ERATE=0.0005;EUR_AF=0.75;LDAF=0.6152;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.28,-0.01,-1.75 +14 105167807 rs4983530 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9952;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9791;RSQ=0.9031;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +14 105168110 rs4074531 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.12;AVGPOST=0.9946;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0405;RSQ=0.9486;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.61 +14 105170221 rs7145566 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0567;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105172529 rs118017785 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0441;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.66 +14 105173831 rs3809455 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.11;AVGPOST=0.9842;ERATE=0.0012;EUR_AF=0.05;LDAF=0.0616;RSQ=0.8903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.08,-0.78 +14 105175085 rs11850821 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.57;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9977;ERATE=0.0008;EUR_AF=0.10;LDAF=0.1828;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105179194 rs10133301 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.85;LDAF=0.9122;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105180565 rs4983535 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.77;LDAF=0.8513;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.07,-0.84 +14 105180706 rs1128840 A C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.96;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=0.9620;ERATE=0.0048;EUR_AF=0.80;LDAF=0.8717;RSQ=0.8972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.450:-5.00,-0.69,-0.10 +14 105180785 rs34251364 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0450;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105196230 rs80097179 A C 100 PASS AA=a;AC=1;AF=0.36;AFR_AF=0.20;AMR_AF=0.36;AN=2;ASN_AF=0.55;AVGPOST=0.9941;ERATE=0.0008;EUR_AF=0.31;LDAF=0.3590;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-1.22,-0.03 +14 105196235 rs34672588 G A 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.58;AMR_AF=0.51;AN=2;ASN_AF=0.58;AVGPOST=0.9943;ERATE=0.0009;EUR_AF=0.41;LDAF=0.5092;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-1.48,-0.01 +14 105196365 rs33958252 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.83;AMR_AF=0.52;AN=2;ASN_AF=0.59;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.42;LDAF=0.5757;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105207134 rs3803307 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.85;AMR_AF=0.65;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.43;LDAF=0.6110;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105213343 rs6644 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.96;AMR_AF=0.65;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6321;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105222037 rs1132975 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4141;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105223001 rs200119861 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8803;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105239192 rs2494732 T C 100 PASS AA=c;AC=2;AF=0.55;AFR_AF=0.54;AMR_AF=0.58;AN=2;ASN_AF=0.70;AVGPOST=0.9964;ERATE=0.0009;EUR_AF=0.43;LDAF=0.5529;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.88,-0.01 +14 105239894 rs1130233 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=0.9963;ERATE=0.0029;EUR_AF=0.24;LDAF=0.3127;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105242966 rs2494735 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.77;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9929;ERATE=0.0031;EUR_AF=0.37;LDAF=0.5520;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105246407 rs3730358 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1496;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105258893 rs2494749 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.87;AMR_AF=0.74;AN=2;ASN_AF=0.34;AVGPOST=0.9855;ERATE=0.0007;EUR_AF=0.84;LDAF=0.6969;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105350178 rs45449696 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.01;AVGPOST=0.9177;ERATE=0.0409;EUR_AF=0.36;LDAF=0.2340;RSQ=0.8345;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-3.25,-0.00,-5.00 +14 105350355 rs2841236 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.33;AMR_AF=0.57;AN=2;ASN_AF=0.23;AVGPOST=0.9724;ERATE=0.0143;EUR_AF=0.71;LDAF=0.4721;RSQ=0.9608;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105350799 rs9788593 C T 100 PASS AA=c;AC=1;AF=0.48;AFR_AF=0.27;AMR_AF=0.65;AN=2;ASN_AF=0.20;AVGPOST=0.9849;ERATE=0.0018;EUR_AF=0.76;LDAF=0.4853;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:0.900:-0.03,-1.13,-5.00 +14 105350868 rs9788594 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.27;AMR_AF=0.65;AN=2;ASN_AF=0.20;AVGPOST=0.9863;ERATE=0.0014;EUR_AF=0.77;LDAF=0.4869;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.00,-5.00 +14 105351673 rs894038 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.27;AMR_AF=0.65;AN=2;ASN_AF=0.20;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.76;LDAF=0.4858;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.900:-0.10,-0.67,-4.70 +14 105354293 rs2582548 A G 100 PASS AA=g;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.65;AN=2;ASN_AF=0.20;AVGPOST=0.9912;ERATE=0.0018;EUR_AF=0.77;LDAF=0.5502;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +14 105356137 rs2919629 G C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.66;AN=2;ASN_AF=0.20;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5524;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105359306 rs3742939 G C 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.29;AMR_AF=0.65;AN=2;ASN_AF=0.20;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.77;LDAF=0.4930;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.96,-0.00,-4.70 +14 105359827 rs2247712 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.68;AMR_AF=0.67;AN=2;ASN_AF=0.20;AVGPOST=0.9961;ERATE=0.0007;EUR_AF=0.78;LDAF=0.5869;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.28,-0.01,-1.73 +14 105360746 rs2841244 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.68;AMR_AF=0.68;AN=2;ASN_AF=0.20;AVGPOST=0.9915;ERATE=0.0007;EUR_AF=0.78;LDAF=0.5891;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105404384 rs1048257 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.65;AMR_AF=0.55;AN=2;ASN_AF=0.38;AVGPOST=0.9990;ERATE=0.0011;EUR_AF=0.53;LDAF=0.5225;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105405599 rs3742935 G C 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.66;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5251;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105405942 rs28454709 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.66;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5247;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105406238 rs2819419 A C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.77;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5534;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105406372 rs61421370 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.31;AMR_AF=0.35;AN=2;ASN_AF=0.06;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3153;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105407031 rs11623422 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.66;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5245;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105407208 rs11851053 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.66;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5247;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105407798 rs4465542 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.66;AMR_AF=0.55;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5237;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105408030 rs9671643 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.65;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9928;ERATE=0.0010;EUR_AF=0.53;LDAF=0.5207;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105408182 rs9672139 T G 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.64;AMR_AF=0.53;AN=2;ASN_AF=0.36;AVGPOST=0.9913;ERATE=0.0020;EUR_AF=0.50;LDAF=0.4985;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105408315 rs28600075 T C 100 PASS AA=t;AC=2;AF=0.53;AFR_AF=0.67;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9975;ERATE=0.0011;EUR_AF=0.53;LDAF=0.5262;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105408955 rs2819422 A G 100 PASS AA=a;AC=2;AF=0.55;AFR_AF=0.75;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=0.9969;ERATE=0.0007;EUR_AF=0.53;LDAF=0.5458;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +14 105409907 rs10141053 T C 100 PASS AA=-;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.32;AN=2;ASN_AF=0.06;AVGPOST=0.9933;ERATE=0.0008;EUR_AF=0.49;LDAF=0.2618;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105409959 rs10152073 G T 100 PASS AA=-;AC=2;AF=0.52;AFR_AF=0.65;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5242;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +14 105410183 rs10438246 T C 100 PASS AA=t;AC=2;AF=0.53;AFR_AF=0.66;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5250;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105410411 rs11160825 C T 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.63;AMR_AF=0.55;AN=2;ASN_AF=0.38;AVGPOST=0.9930;ERATE=0.0044;EUR_AF=0.53;LDAF=0.5134;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105410775 rs2819424 A G 100 PASS AA=N;AC=2;AF=0.55;AFR_AF=0.78;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=0.9940;ERATE=0.0012;EUR_AF=0.53;LDAF=0.5541;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.57,-0.00 +14 105410827 rs28380382 C T 100 PASS AA=c;AC=2;AF=0.52;AFR_AF=0.65;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5229;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105411153 rs34499888 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.12;AMR_AF=0.33;AN=2;ASN_AF=0.07;AVGPOST=0.9900;ERATE=0.0012;EUR_AF=0.47;LDAF=0.2595;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105411700 rs4264326 A G 100 PASS AA=N;AC=2;AF=0.54;AFR_AF=0.73;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=0.9918;ERATE=0.0008;EUR_AF=0.53;LDAF=0.5409;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.17,-0.00 +14 105411781 rs10438247 G A 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.61;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=0.9805;ERATE=0.0065;EUR_AF=0.53;LDAF=0.5089;RSQ=0.9694;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.00,-3.92 +14 105412066 rs77154428 C T 100 PASS AA=c;AC=1;AF=0.43;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.29;AVGPOST=0.9542;ERATE=0.0363;EUR_AF=0.50;LDAF=0.4277;RSQ=0.9052;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.74 +14 105412386 rs200059681 C T 100 PASS AA=N;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9980;ERATE=0.0005;LDAF=0.0015;RSQ=0.3810;SNPSOURCE=EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105413204 rs2582514 G T 100 PASS AA=t;AC=2;AF=0.49;AFR_AF=0.69;AMR_AF=0.51;AN=2;ASN_AF=0.33;AVGPOST=0.9545;ERATE=0.0042;EUR_AF=0.47;LDAF=0.4875;RSQ=0.9409;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:1.950:-1.15,-0.22,-0.48 +14 105413790 rs11848564 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.48;AMR_AF=0.36;AN=2;ASN_AF=0.06;AVGPOST=0.9926;ERATE=0.0008;EUR_AF=0.49;LDAF=0.3556;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105414312 rs79130434 T C 100 PASS AA=t;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9908;ERATE=0.0108;EUR_AF=0.0013;LDAF=0.0484;RSQ=0.9263;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105414629 rs72702027 G A 100 PASS AA=-;AC=2;AF=0.51;AFR_AF=0.60;AMR_AF=0.56;AN=2;ASN_AF=0.38;AVGPOST=0.9894;ERATE=0.0012;EUR_AF=0.53;LDAF=0.5082;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.05,-0.00 +14 105414790 rs2582513 A G 100 PASS AA=-;AC=2;AF=0.54;AFR_AF=0.67;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=0.9884;ERATE=0.0006;EUR_AF=0.53;LDAF=0.5378;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105414810 rs10145032 C G 100 PASS AA=-;AC=2;AF=0.51;AFR_AF=0.56;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=0.9866;ERATE=0.0024;EUR_AF=0.52;LDAF=0.5104;RSQ=0.9789;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105415200 rs10145566 G C 100 PASS AA=N;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.34;AN=2;ASN_AF=0.06;AVGPOST=0.9772;ERATE=0.0063;EUR_AF=0.48;LDAF=0.2641;RSQ=0.9624;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105415422 rs79003030 G A 100 PASS AA=N;AC=2;AF=0.34;AFR_AF=0.43;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=0.9497;ERATE=0.0013;EUR_AF=0.25;LDAF=0.3385;RSQ=0.9325;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105415469 rs11846918 T C 100 PASS AA=N;AC=2;AF=0.43;AFR_AF=0.66;AMR_AF=0.50;AN=2;ASN_AF=0.35;AVGPOST=0.9363;ERATE=0.0081;EUR_AF=0.30;LDAF=0.4221;RSQ=0.9216;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105415659 rs61271499 G A 100 PASS AA=-;AC=2;AF=0.15;AFR_AF=0.13;AMR_AF=0.22;AN=2;ASN_AF=0.29;AVGPOST=0.9765;ERATE=0.0016;EUR_AF=0.02;LDAF=0.1531;RSQ=0.9436;SNPSOURCE=LOWCOV,EXOME;THETA=0.0199;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.36,-0.02 +14 105416010 rs2582511 T C 100 PASS AA=-;AC=2;AF=0.55;AFR_AF=0.73;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9809;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5518;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105416087 rs59117977 C T 100 PASS AA=-;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.07;AN=2;ASN_AF=0.27;AVGPOST=0.9907;ERATE=0.0006;EUR_AF=0.01;LDAF=0.1069;RSQ=0.9662;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105416220 rs2819435 T A 100 PASS AA=N;AC=2;AF=0.75;AFR_AF=0.96;AMR_AF=0.69;AN=2;ASN_AF=0.57;AVGPOST=0.9337;ERATE=0.0113;EUR_AF=0.78;LDAF=0.7389;RSQ=0.8917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105416230 rs11851005 A G 100 PASS AA=a;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.04;AN=2;ASN_AF=0.24;AVGPOST=0.9666;ERATE=0.0043;EUR_AF=0.0013;LDAF=0.1129;RSQ=0.8925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105416649 rs28593209 G A 100 PASS AA=g;AC=1;AF=0.29;AFR_AF=0.09;AMR_AF=0.39;AN=2;ASN_AF=0.06;AVGPOST=0.9651;ERATE=0.0026;EUR_AF=0.55;LDAF=0.2926;RSQ=0.9504;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105416685 rs2582506 C G 100 PASS AA=a;AC=2;AF=0.58;AFR_AF=0.69;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=0.9415;ERATE=0.0100;EUR_AF=0.65;LDAF=0.5738;RSQ=0.9241;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105416823 rs2582504 G A 100 PASS AA=a;AC=1;AF=0.14;AFR_AF=0.18;AMR_AF=0.12;AN=2;ASN_AF=0.26;AVGPOST=0.9833;ERATE=0.0011;EUR_AF=0.04;LDAF=0.1425;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105416971 rs77454674 T G 100 PASS AA=t;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.13;AVGPOST=0.9843;ERATE=0.0005;LDAF=0.0404;RSQ=0.8779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-2.67,-0.01,-1.96 +14 105417285 rs76453246 C T 100 PASS AA=c;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=0.9503;ERATE=0.0048;EUR_AF=0.13;LDAF=0.0746;RSQ=0.7661;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:0.900:-1.26,-0.02,-5.00 +14 105417353 rs77667449 T G 100 PASS AA=N;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9391;ERATE=0.0007;EUR_AF=0.21;LDAF=0.1108;RSQ=0.8324;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105417837 rs76231332 A G 100 PASS AA=N;AC=2;AF=0.22;AFR_AF=0.33;AMR_AF=0.18;AN=2;ASN_AF=0.27;AVGPOST=0.9431;ERATE=0.0007;EUR_AF=0.14;LDAF=0.2317;RSQ=0.8988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.98,-0.00 +14 105417894 rs2819440 C G 100 PASS AA=N;AC=2;AF=0.75;AFR_AF=0.99;AMR_AF=0.68;AN=2;ASN_AF=0.58;AVGPOST=0.9196;ERATE=0.0045;EUR_AF=0.76;LDAF=0.7308;RSQ=0.8796;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105418264 rs55650155 G A 100 PASS AA=a;AC=1;AF=0.34;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.26;AVGPOST=0.9299;ERATE=0.0261;EUR_AF=0.47;LDAF=0.3443;RSQ=0.8985;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105418391 rs11625007 C T 100 PASS AA=t;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9649;ERATE=0.0125;EUR_AF=0.51;LDAF=0.4078;RSQ=0.9394;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.44 +14 105418504 rs151013711 G T 100 PASS AA=t;AC=1;AF=0.15;AFR_AF=0.27;AMR_AF=0.09;AN=2;ASN_AF=0.24;AVGPOST=0.9725;ERATE=0.0083;EUR_AF=0.03;LDAF=0.1513;RSQ=0.9275;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-1.93,-0.01,-4.00 +14 105418638 rs78353106 A G 100 PASS AA=N;AC=1;AF=0.18;AFR_AF=0.34;AMR_AF=0.11;AN=2;ASN_AF=0.29;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.04;LDAF=0.1819;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-3.27,-0.00,-5.00 +14 105419234 rs74090129 T C 100 PASS AA=t;AC=1;AF=0.18;AFR_AF=0.33;AMR_AF=0.10;AN=2;ASN_AF=0.29;AVGPOST=0.9976;ERATE=0.0007;EUR_AF=0.04;LDAF=0.1786;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105419568 rs78110724 A G 100 PASS AA=N;AC=1;AF=0.17;AFR_AF=0.30;AMR_AF=0.10;AN=2;ASN_AF=0.27;AVGPOST=0.9882;ERATE=0.0023;EUR_AF=0.04;LDAF=0.1668;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105420215 rs2278607 T C 100 PASS AA=t;AC=1;AF=0.17;AFR_AF=0.30;AMR_AF=0.11;AN=2;ASN_AF=0.29;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.04;LDAF=0.1745;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105420927 rs879210 A G 100 PASS AA=N;AC=1;AF=0.30;AFR_AF=0.33;AMR_AF=0.32;AN=2;ASN_AF=0.06;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.47;LDAF=0.3048;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105421050 rs879209 T G 100 PASS AA=N;AC=1;AF=0.30;AFR_AF=0.31;AMR_AF=0.31;AN=2;ASN_AF=0.06;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2993;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105461067 rs894039 C T 100 PASS AA=c;AC=1;AF=0.73;AFR_AF=0.80;AMR_AF=0.74;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7289;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105478102 rs3803294 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.24;AMR_AF=0.51;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4393;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105518456 rs3803321 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.06;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.01;LDAF=0.1079;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105609335 rs10149229 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.87;AMR_AF=0.65;AN=2;ASN_AF=0.57;AVGPOST=0.9896;ERATE=0.0032;EUR_AF=0.67;LDAF=0.6867;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.35,-0.26 +14 105611282 rs2272591 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.86;AMR_AF=0.65;AN=2;ASN_AF=0.54;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.67;LDAF=0.6767;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.42 +14 105612357 rs201090561 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9992;ERATE=0.0003;LDAF=0.0008;RSQ=0.5871;SNPSOURCE=EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.12,-0.61 +14 105617042 rs1057744 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.81;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9929;ERATE=0.0014;EUR_AF=0.56;LDAF=0.5414;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-1.46,-0.02,-5.00 +14 105618670 rs2238287 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.86;AMR_AF=0.66;AN=2;ASN_AF=0.58;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6914;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.05,-0.04,-5.00 +14 105622056 rs2816679 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9713;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.24,-0.00 +14 105859593 rs141292203 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0010;RSQ=0.9359;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105905126 rs4983620 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.73;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9357;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105916420 rs4983409 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9693;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105930406 rs4983413 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.02;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=0.9969;ERATE=0.0071;EUR_AF=0.23;LDAF=0.3001;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +14 105930923 rs11845995 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.17;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9980;ERATE=0.0018;EUR_AF=0.97;LDAF=0.7850;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.94,-0.01 +14 105935824 rs13707 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.49;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8789;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +14 105945891 rs11849001 C T 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.55;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9971;ERATE=0.0027;EUR_AF=0.95;LDAF=0.8649;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +14 105953595 rs7140395 T C 100 PASS AA=c;AC=2;AF=0.87;AFR_AF=0.47;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=1.00;LDAF=0.8745;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +14 105960187 rs118022421 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0020;EUR_AF=0.01;LDAF=0.0075;RSQ=0.9691;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +14 105960319 rs61641418 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.68;AMR_AF=0.56;AN=2;ASN_AF=0.80;AVGPOST=0.7237;ERATE=0.0279;EUR_AF=0.50;LDAF=0.6019;RSQ=0.5321;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|1:1.350:-0.48,-0.48,-0.48 +13 19751544 rs2297224 C T 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2903;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-2.91 +13 19753438 rs491873 C T 100 PASS AA=c;AC=1;AF=0.45;AFR_AF=0.23;AMR_AF=0.49;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4518;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 20000630 rs2497218 T C 100 PASS AA=N;AC=2;AF=0.95;AFR_AF=0.82;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9529;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 20000702 rs4408395 G C 100 PASS AA=g;AC=2;AF=0.91;AFR_AF=0.68;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9066;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.92,-0.01 +13 20038584 rs7339103 A G 100 PASS AA=a;AC=2;AF=0.76;AFR_AF=0.37;AMR_AF=0.75;AN=2;ASN_AF=0.98;AVGPOST=0.9848;ERATE=0.0076;EUR_AF=0.86;LDAF=0.7639;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 20041323 rs2497251 G T 100 PASS AA=t;AC=2;AF=0.93;AFR_AF=0.78;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9760;ERATE=0.0061;EUR_AF=0.97;LDAF=0.9257;RSQ=0.8983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.60,-0.01 +13 20240743 rs9508812 T C 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.42;AMR_AF=0.72;AN=2;ASN_AF=0.91;AVGPOST=0.9963;ERATE=0.0053;EUR_AF=0.79;LDAF=0.7290;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 20277413 rs75085951 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.36;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9474;ERATE=0.1215;EUR_AF=0.42;LDAF=0.4231;RSQ=0.7474;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.150:-2.50,-0.25,-0.37 +13 20325625 rs2340650 C G 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.28;AMR_AF=0.69;AN=2;ASN_AF=0.92;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.75;LDAF=0.6813;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +13 20356941 rs9508887 T A 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.38;AMR_AF=0.73;AN=2;ASN_AF=0.92;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7245;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 20716533 rs968566 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9966;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9819;RSQ=0.9271;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +13 21006475 rs7983215 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9939;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 21063524 rs3764092 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.48;AMR_AF=0.23;AN=2;ASN_AF=0.10;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2544;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 21205140 rs1329519 A T 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.51;AMR_AF=0.74;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7518;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 21205192 rs9509307 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.51;AMR_AF=0.74;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7518;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 21331779 rs3924006 T A 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3455;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 21358061 rs17318617 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3127;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 21562832 rs2770928 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.68;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8693;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 21562948 rs558614 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.50;AMR_AF=0.73;AN=2;ASN_AF=0.55;AVGPOST=0.9958;ERATE=0.0011;EUR_AF=0.78;LDAF=0.6517;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +13 21620085 rs7317471 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.66;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8103;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 21720956 rs4620 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.24;AMR_AF=0.54;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4816;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 21732094 rs4770121 C T 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.81;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0009;EUR_AF=0.95;LDAF=0.9273;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 21746453 rs2026600 T C 100 PASS AA=T;AC=1;AF=0.92;AFR_AF=0.78;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9190;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 22178308 rs2761924 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9944;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9928;RSQ=0.6770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-1.39,-0.38,-0.27 +13 22255167 rs3818460 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2726;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 22255301 rs2274296 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2861;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 22275394 rs9509841 A G 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.64;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8300;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 22275583 rs9509842 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9854;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 23824775 rs201683351 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 23898509 rs1800353 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.33;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6361;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 23898664 rs1800354 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.72;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.90;LDAF=0.8871;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 23898693 rs9510701 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.05;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0804;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 23907677 rs2737701 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 23908034 rs2737700 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.39;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.44;LDAF=0.3492;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 23929842 rs41315020 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0589;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 23985391 rs17078720 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.45;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3107;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 24234517 rs3751364 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.63;AMR_AF=0.74;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6883;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 24242801 rs7329483 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.70;AMR_AF=0.85;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7929;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 24243200 rs3751363 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.71;AMR_AF=0.90;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8164;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 24411772 rs7333040 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 24465743 rs3864971 A G 100 PASS AA=g;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9607;ERATE=0.0077;EUR_AF=0.98;LDAF=0.9546;RSQ=0.7208;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.87,-0.01 +13 24865057 rs12430530 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1644;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 24869025 rs7993660 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9927;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 24869048 rs9553233 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.68;AMR_AF=0.67;AN=2;ASN_AF=0.93;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.70;LDAF=0.7536;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 24890228 rs4275724 A C 100 PASS AA=a;AC=1;AF=0.28;AFR_AF=0.37;AMR_AF=0.21;AN=2;ASN_AF=0.35;AVGPOST=0.9897;ERATE=0.0151;EUR_AF=0.19;LDAF=0.2772;RSQ=0.9803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 24895240 rs200205073 G A 100 PASS AA=N;AC=1;AF=0.50;AFR_AF=0.24;AMR_AF=0.58;AN=2;ASN_AF=0.52;AVGPOST=0.8431;ERATE=0.0372;EUR_AF=0.62;LDAF=0.4742;RSQ=0.7966;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-3.62,-0.00,-5.00 +13 24895393 rs3751355 A G 100 PASS AA=N;AC=1;AF=0.57;AFR_AF=0.34;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.8521;ERATE=0.0296;EUR_AF=0.70;LDAF=0.5452;RSQ=0.8048;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:0.750:-0.18,-0.47,-2.45 +13 24895559 rs3751357 A G 100 PASS AA=N;AC=1;AF=0.61;AFR_AF=0.40;AMR_AF=0.66;AN=2;ASN_AF=0.61;AVGPOST=0.9489;ERATE=0.0295;EUR_AF=0.73;LDAF=0.6087;RSQ=0.9330;SNPSOURCE=EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:0.900:-0.10,-0.70,-5.00 +13 24895684 rs2862239 A G 100 PASS AA=N;AC=2;AF=0.84;AFR_AF=0.71;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=0.9575;ERATE=0.0073;EUR_AF=0.87;LDAF=0.8402;RSQ=0.9022;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:1.900:-0.48,-0.48,-0.48 +13 25008588 rs1372085 A G 100 PASS AA=N;AC=2;AF=0.95;AFR_AF=0.86;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9980;ERATE=0.0022;EUR_AF=0.96;LDAF=0.9470;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25008630 rs1822135 A G 100 PASS AA=a;AC=2;AF=0.94;AFR_AF=0.83;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25008903 rs9318536 G T 100 PASS AA=g;AC=2;AF=0.90;AFR_AF=0.79;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=0.9701;ERATE=0.0093;EUR_AF=0.92;LDAF=0.8958;RSQ=0.8897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25009099 rs9511259 A C 100 PASS AA=N;AC=2;AF=0.95;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9497;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25016687 rs4770683 C T 100 PASS AA=t;AC=2;AF=0.95;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9495;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +13 25016870 rs3816221 C A 100 PASS AA=a;AC=1;AF=0.55;AFR_AF=0.61;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=0.9854;ERATE=0.0362;EUR_AF=0.55;LDAF=0.5483;RSQ=0.9532;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 25020782 rs9318553 C G 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.45;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8388;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.53,-0.00 +13 25020863 rs9318554 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.65;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8907;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25021154 rs61947037 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.21;AMR_AF=0.60;AN=2;ASN_AF=0.66;AVGPOST=0.9871;ERATE=0.0008;EUR_AF=0.53;LDAF=0.5016;RSQ=0.9839;SNPSOURCE=EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25021200 rs9318558 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.83;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9842;ERATE=0.0051;EUR_AF=0.95;LDAF=0.9301;RSQ=0.9293;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.85,-0.01 +13 25021211 rs7333856 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9233;ERATE=0.0263;EUR_AF=0.80;LDAF=0.7042;RSQ=0.8690;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +13 25021245 rs7334587 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.43;AMR_AF=0.74;AN=2;ASN_AF=0.70;AVGPOST=0.9324;ERATE=0.0412;EUR_AF=0.72;LDAF=0.6424;RSQ=0.8604;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.36,-0.02 +13 25027744 rs4770684 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9990;ERATE=0.0037;EUR_AF=0.97;LDAF=0.9410;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25029218 rs2275660 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.45;AMR_AF=0.79;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6636;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25052261 rs4770696 C T 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.43;AMR_AF=0.58;AN=2;ASN_AF=0.65;AVGPOST=0.9883;ERATE=0.0100;EUR_AF=0.49;LDAF=0.5338;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 25052393 rs79107024 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9760;ERATE=0.0790;EUR_AF=0.14;LDAF=0.1381;RSQ=0.9133;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 25052420 rs17080653 T A 100 PASS AA=T;AC=2;AF=0.29;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.31;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2902;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.85,-0.00 +13 25065008 rs1361577 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2646;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 25075859 rs1539096 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.63;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5909;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25267051 rs200821826 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 25356053 rs9707144 T C 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4470;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25367301 rs1158061 C T 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.11;AMR_AF=0.32;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2573;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25370255 rs1446294 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.84;AMR_AF=0.86;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8556;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25373515 rs12865323 G C 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1609;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 25399752 rs2121253 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.84;AMR_AF=0.86;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8556;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25404743 rs4769382 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9712;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25419176 rs6490984 A G 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.84;AMR_AF=0.86;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8551;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25453420 rs2275939 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0425;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 25458650 rs1530876 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.62;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7830;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25466774 rs9318917 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.57;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7719;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 25466955 rs3742165 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.23;AMR_AF=0.55;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 25480145 rs61729909 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.0040;LDAF=0.0412;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 25480295 rs75985315 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0407;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 25486877 rs61739263 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 25743781 rs2282406 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.11;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0471;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 26043182 rs7317185 A C 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.34;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2088;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 26128096 rs9742643 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.0035;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0663;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 26148966 rs6491066 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.69;AMR_AF=0.67;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.70;LDAF=0.5489;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 26155953 rs7335339 G C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4282;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 26273385 rs6491088 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 26434438 rs78176904 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0154;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 26586775 rs2274135 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.37;AMR_AF=0.61;AN=2;ASN_AF=0.74;AVGPOST=0.9186;ERATE=0.0104;EUR_AF=0.57;LDAF=0.5700;RSQ=0.8757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:1.950:-0.89,-0.39,-0.33 +13 26974562 rs998692 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.42;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7976;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 27259809 rs139408332 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0096;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 27664139 rs41300570 A T 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0553;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 27669722 rs142054250 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 28009031 rs7323 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1952;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 28009920 rs1218825 G C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.90;AMR_AF=0.76;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.95;LDAF=0.8052;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 28143229 rs8002697 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.66;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5293;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 28197436 rs7097 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.06;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3502;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 28239940 rs11029 G C 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.47;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2733;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 28239970 rs14105 G A 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.21;AMR_AF=0.53;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3688;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 28367061 rs1231058 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.97;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9505;ERATE=0.0011;EUR_AF=0.79;LDAF=0.8855;RSQ=0.8364;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.40 +13 28367275 rs3742112 G C 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.37;AMR_AF=0.48;AN=2;ASN_AF=0.32;AVGPOST=0.9792;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3723;RSQ=0.9666;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-2.72,-0.00,-5.00 +13 28537242 rs1805108 A C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.47;AMR_AF=0.76;AN=2;ASN_AF=0.82;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7258;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 28537317 rs1805107 G A 100 PASS AA=g;AC=2;AF=0.73;AFR_AF=0.47;AMR_AF=0.76;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7269;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 28539185 rs2481953 T A 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.39;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9941;ERATE=0.0010;EUR_AF=0.77;LDAF=0.6789;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 28539186 rs3742110 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.34;AVGPOST=0.9894;ERATE=0.0079;EUR_AF=0.23;LDAF=0.2589;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 28589267 rs4073630 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.54;LDAF=0.4273;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0309;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 28607989 rs2491223 T G 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.26;AMR_AF=0.71;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6322;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 28608459 rs34374211 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.23;AMR_AF=0.06;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1152;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 28609825 rs2491227 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.21;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6194;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 28609846 rs2491228 A T 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.21;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6194;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 28610183 rs2491231 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.21;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6199;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 28624294 rs1933437 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.30;AMR_AF=0.61;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5685;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 28636084 rs7338903 G A 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9593;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 28882948 rs9579177 G A 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.30;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7408;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 28883061 rs7993418 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.30;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7404;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 28886113 rs7328692 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9849;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 29675131 rs3829381 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.31;AMR_AF=0.30;AN=2;ASN_AF=0.58;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.27;LDAF=0.3660;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +13 29898768 rs928661 A C 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.48;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7863;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 29898881 rs928660 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.48;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7862;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +13 29898889 rs928659 G C 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.46;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7809;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +13 30077088 rs2482096 C T 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.47;AMR_AF=0.77;AN=2;ASN_AF=0.96;AVGPOST=0.9986;ERATE=0.0009;EUR_AF=0.76;LDAF=0.7485;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 30090404 rs2989592 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.96;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9671;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +13 30091714 rs2482089 G A 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 30091819 rs2482090 G C 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.96;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9665;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 30098226 rs2776958 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9648;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.71,-0.01 +13 30107067 rs2277451 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2578;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 30109939 rs2274837 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1865;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 30805627 rs202087 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.88;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9104;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 31036681 rs1929606 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9749;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 31231806 rs7984952 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.83;AMR_AF=0.43;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4378;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 31233063 rs3742302 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.83;AMR_AF=0.42;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4370;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 31309830 rs4769055 C A 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.82;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4899;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 31318308 rs3803277 C A 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.45;AMR_AF=0.57;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5264;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.82,-0.00 +13 31480827 rs9531945 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9930;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9708;RSQ=0.9038;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +13 31513931 rs2225505 T A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.44;AMR_AF=0.39;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3942;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 31531195 rs6560988 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 31543095 rs2274869 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.09;AMR_AF=0.35;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2054;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 31725260 rs11556147 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2715;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 31725732 rs4941772 A C 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.25;AMR_AF=0.30;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2693;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 31729729 rs1047086 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2715;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 31821240 rs9564692 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.44;AMR_AF=0.47;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4729;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 31821256 rs9542307 C G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2798;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 31821992 rs4943266 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9703;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 31891746 rs1041073 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.39;AMR_AF=0.79;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.76;LDAF=0.6874;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 31903834 rs1060709 G T 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.22;AMR_AF=0.65;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.73;LDAF=0.5178;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 31903841 rs112937254 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.0020;AMR_AF=0.16;AN=2;ASN_AF=0.0017;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.21;LDAF=0.1023;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 32360547 rs7325513 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.59;AMR_AF=0.49;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6115;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 32676114 rs364995 A G 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5700;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 32698544 rs629265 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4405;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 32705785 rs17591851 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1393;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 32708993 rs9590780 T C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1973;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 32758834 rs798971 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.98;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8130;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 32811607 rs2806639 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.32;AMR_AF=0.25;AN=2;ASN_AF=0.01;AVGPOST=0.9984;ERATE=0.0017;EUR_AF=0.32;LDAF=0.2257;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 32828553 rs2157961 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.22;AMR_AF=0.57;AN=2;ASN_AF=0.49;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.59;LDAF=0.4767;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 32852585 rs11617081 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1538;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 32906729 rs144848 A C 100 PASS AA=A;AC=2;AF=0.24;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0020;EUR_AF=0.29;LDAF=0.2414;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 32913055 rs206075 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9744;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 32915005 rs206076 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 32929387 rs169547 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9776;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 32936646 rs9534262 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.56;AMR_AF=0.54;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5470;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 32937521 rs28897749 G A 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 33017480 rs139308263 T C 100 PASS AA=T;AC=1;AF=0.0018;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0019;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 33232334 rs7335546 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.47;LDAF=0.3276;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 33232435 rs2301393 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.47;LDAF=0.3137;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 33315206 rs733487 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3176;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 33332648 rs3752474 G T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3320;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 33333876 rs7988089 A C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.47;LDAF=0.3318;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 33590851 rs2772364 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9925;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9512;RSQ=0.9455;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.01 +13 33634983 rs564481 C T 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.04;AMR_AF=0.47;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.37;LDAF=0.2598;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 33635463 rs648202 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.56;AMR_AF=0.82;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7308;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 33635835 rs649964 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9863;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 33635939 rs650439 T A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.74;AMR_AF=0.85;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7779;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 33686065 rs17518136 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0648;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 33703656 rs495680 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.38;AMR_AF=0.59;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5397;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 35619588 rs73491592 C A 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.10;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0609;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-0.67,-0.10,-5.00 +13 35633030 rs17775456 A T 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0278;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 35644952 rs7995564 A C 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.17;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0790;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 35730381 rs117397794 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0280;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 35735976 rs17051895 A G 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0799;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 35926497 rs9565205 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.12;AMR_AF=0.63;AN=2;ASN_AF=0.30;AVGPOST=0.9948;ERATE=0.0025;EUR_AF=0.59;LDAF=0.4126;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 36141009 rs9544667 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9309;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 36141011 rs35877639 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.37;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3090;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 36167429 rs12865768 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1744;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 36223780 rs3765523 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1079;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 36244990 rs3794387 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.29;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2134;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 36367641 rs1926459 G C 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.14;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2706;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 36382312 rs4421866 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2532;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 36383264 rs9545424 G A 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1211;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 36385031 rs2322807 G T 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.43;AMR_AF=0.26;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2980;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 36397031 rs3751346 C G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.55;AMR_AF=0.28;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3350;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 36401731 rs2225046 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.13;LDAF=0.1668;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 36401746 rs9574698 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.30;AMR_AF=0.25;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.23;LDAF=0.3460;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 36401909 rs9574699 T C 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.46;AMR_AF=0.33;AN=2;ASN_AF=0.55;AVGPOST=0.9989;ERATE=0.0085;EUR_AF=0.34;LDAF=0.4171;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0171;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 36402426 rs2296645 A G 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.13;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=0.9979;ERATE=0.0012;EUR_AF=0.52;LDAF=0.3599;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0096;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 36402475 rs2296646 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.39;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=0.9979;ERATE=0.0035;EUR_AF=0.73;LDAF=0.6190;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0187;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +13 36521460 rs1936003 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.12;AMR_AF=0.67;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.4753;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 36686138 rs3748308 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.28;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.2152;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 36747798 rs1410633 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 37393971 rs201205150 G A 100 PASS AA=g;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 37569200 rs2323165 A G 100 PASS AA=G;AC=1;AF=0.94;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9383;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 37580139 rs1127446 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.11;AMR_AF=0.43;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4163;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 37583831 rs9469 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.11;AMR_AF=0.43;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4163;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 37584838 rs7317750 G A 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.62;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8560;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 37625601 rs1543738 T C 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.63;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8661;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 37678884 rs17773251 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0859;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 37679268 rs9576175 G T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6047;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 38138730 rs4390468 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.82;AMR_AF=0.74;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7738;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 38152959 rs7322626 T G 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.56;AMR_AF=0.45;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4187;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 38153130 rs7322993 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.82;AMR_AF=0.74;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7747;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 38153351 rs7323378 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.40;AMR_AF=0.44;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3808;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 38154687 rs142233571 A G 100 PASS AA=A;AC=1;AF=0.0037;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0037;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 38237872 rs2985171 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 38357471 rs3904512 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.40;AMR_AF=0.36;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3530;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 38924083 rs2231330 A T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.62;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8963;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 39262057 rs1868464 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.51,-0.00 +13 39263023 rs12874397 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.26;LDAF=0.1174;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 39263714 rs2496423 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 39264690 rs2496425 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.82;AMR_AF=0.42;AN=2;ASN_AF=0.43;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.26;LDAF=0.4567;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39338612 rs2442370 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9618;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +13 39430314 rs9548509 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.73;AMR_AF=0.74;AN=2;ASN_AF=0.98;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.67;LDAF=0.7750;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39435518 rs150920693 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39542490 rs143230991 C G 100 PASS AA=C;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 39542531 rs7323023 A C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1860;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39586343 rs9576697 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2011;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39587166 rs11147745 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.34;AMR_AF=0.19;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2203;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39587677 rs3751379 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.45;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2518;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39587865 rs3751378 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2002;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39587889 rs3751377 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2002;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 39622075 rs9532318 T C 100 PASS AA=t;AC=2;AF=0.83;AFR_AF=0.95;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.72;LDAF=0.8281;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 40229891 rs3812882 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.51;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9850;ERATE=0.0030;EUR_AF=0.39;LDAF=0.4713;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.62,-0.01 +13 40229957 rs3812883 T A 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.51;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4633;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +13 40230043 rs3812884 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.39;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.39;LDAF=0.4363;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.69,-0.00 +13 40233691 rs7330016 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.60;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6843;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 41323397 rs13508 C T 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1425;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +13 41515286 rs1056820 T A 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.17;AMR_AF=0.63;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.4379;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 41517985 rs3764056 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.17;AMR_AF=0.63;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.4378;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 41525586 rs3736953 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.18;AMR_AF=0.63;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.4415;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 41533052 rs7799 T C 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.22;AMR_AF=0.64;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.4598;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 41705495 rs584594 A G 100 PASS AA=a;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9717;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 41767338 rs2039134 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.09;AMR_AF=0.79;AN=2;ASN_AF=0.39;AVGPOST=0.9909;ERATE=0.0093;EUR_AF=0.81;LDAF=0.5343;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 41767341 rs2039135 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.09;AMR_AF=0.82;AN=2;ASN_AF=0.40;AVGPOST=0.9944;ERATE=0.0010;EUR_AF=0.82;LDAF=0.5481;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 41834744 rs2297555 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.69;AMR_AF=0.75;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6709;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 41835089 rs1332940 T G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.69;AMR_AF=0.75;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6709;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +13 41902939 rs3812896 T C 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9529;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 42032572 rs7136 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.76;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=0.9784;ERATE=0.0005;EUR_AF=0.40;LDAF=0.5802;RSQ=0.9700;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.05,-0.04 +13 42189232 rs3862741 C G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.52;AMR_AF=0.76;AN=2;ASN_AF=0.72;AVGPOST=0.9970;ERATE=0.0018;EUR_AF=0.71;LDAF=0.6762;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 42335222 rs9566844 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2802;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 42442546 rs3742262 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.07;AMR_AF=0.32;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2404;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 42465713 rs9562362 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.33;LDAF=0.2245;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 42481712 rs2003064 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.64;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.86;LDAF=0.8482;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 42701717 rs605371 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.44;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3249;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 42701739 rs670676 A T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.84;AMR_AF=0.70;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7212;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 42703682 rs3742261 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.19;AMR_AF=0.46;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.3117;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 42763140 rs2122247 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2125;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 42772717 rs9533031 G T 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.41;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9921;ERATE=0.0191;EUR_AF=0.57;LDAF=0.4590;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 42793479 rs180870 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.58;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.68;LDAF=0.6860;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 42803263 rs17646069 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0713;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 42803341 rs545602 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.82;AMR_AF=0.76;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8368;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 42882762 rs238314 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8657;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 43148565 rs2296533 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.55;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9939;ERATE=0.0008;EUR_AF=0.47;LDAF=0.4675;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.06,-0.00 +13 43155443 rs2277439 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.84;LDAF=0.7642;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 43181024 rs9562415 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0297;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 43462422 rs1044856 A T 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1860;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 43463299 rs1323864 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.65;AMR_AF=0.62;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6339;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 43469157 rs1359185 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.38;AMR_AF=0.44;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4269;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 43469211 rs1359184 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.39;AMR_AF=0.45;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4392;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 43597865 rs11617079 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.37;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2379;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 43639845 rs3783044 A C 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2282;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 43681427 rs1047775 G A 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.35;AVGPOST=0.9682;ERATE=0.0487;EUR_AF=0.45;LDAF=0.4408;RSQ=0.9538;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.87,-0.00 +13 43788158 rs703207 G A 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7742;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 43839494 rs4306408 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9780;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 43930337 rs2281713 A G 100 PASS AA=a;AC=2;AF=0.85;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8531;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 44411432 rs9567280 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0593;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 44457925 rs3764147 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.33;AMR_AF=0.37;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3016;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 44971388 rs74508112 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0485;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 45010616 rs7997320 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3478;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 45148257 rs9525983 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0529;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 45149662 rs9525984 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0551;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 45563464 rs1140993 G C 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.12;AMR_AF=0.63;AN=2;ASN_AF=0.58;AVGPOST=0.9930;ERATE=0.0006;EUR_AF=0.77;LDAF=0.5518;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.06,-0.00 +13 46050519 rs2986001 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.22;AMR_AF=0.39;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3894;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 46067593 rs2985959 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.20;AMR_AF=0.39;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3821;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 46077381 rs3014960 G A 100 PASS AA=A;AC=1;AF=0.90;AFR_AF=0.95;AMR_AF=0.90;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8963;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 46085864 rs2985970 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8666;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 46103935 rs2274285 A G 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.47;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7029;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 46108853 rs3014902 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.81;AMR_AF=0.87;AN=2;ASN_AF=0.87;AVGPOST=0.9857;ERATE=0.0310;EUR_AF=0.84;LDAF=0.8473;RSQ=0.9713;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +13 46108854 rs56244086 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.49;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9856;ERATE=0.0288;EUR_AF=0.66;LDAF=0.6665;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 46287373 rs80072371 C A 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.05;AN=2;AVGPOST=0.9953;ERATE=0.0010;EUR_AF=0.05;LDAF=0.0575;RSQ=0.9656;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 46541673 rs9534264 T A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.90;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7934;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 46562935 rs1134071 A G 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.90;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7938;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 46619071 rs3736943 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.17;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2573;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 46629944 rs1926447 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7994;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 46629995 rs1926446 C A 100 PASS AA=c;AC=2;AF=0.80;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7994;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 46641481 rs7337140 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.91;AMR_AF=0.80;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8226;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 46656669 rs2296642 A G 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.89;AMR_AF=0.80;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8163;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 46679039 rs3742266 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.25;AMR_AF=0.33;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3245;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 46708291 rs4941543 T C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.80;AMR_AF=0.92;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8802;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 46728924 rs2296122 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.58;AMR_AF=0.56;AN=2;ASN_AF=0.47;AVGPOST=0.9984;ERATE=0.0120;EUR_AF=0.48;LDAF=0.5113;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 46930536 rs181977 C A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.60;AMR_AF=0.42;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.34;LDAF=0.4785;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 46946157 rs1408184 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.57;AMR_AF=0.42;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4712;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 47255902 rs17069216 G A 100 PASS AA=.;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0375;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 47260054 rs842381 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9682;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 47260224 rs9590979 T G 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0375;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +13 47261970 rs842375 T C 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.86;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8076;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 47273458 rs706621 G C 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.89;AMR_AF=0.77;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 47279454 rs842387 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.94;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8208;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 47297352 rs7319836 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.59;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7907;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 47302934 rs3742273 T A 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.23;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.85;LDAF=0.6597;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 47308109 rs2298086 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.87;AMR_AF=0.96;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 47315984 rs3742274 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.85;AMR_AF=0.96;AN=2;ASN_AF=0.89;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9298;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 47469940 rs6313 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.35;AMR_AF=0.39;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4307;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 48547467 rs7320366 A T 100 PASS AA=t;AC=2;AF=0.72;AFR_AF=0.55;AMR_AF=0.72;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7185;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 48563008 rs6561424 G A 100 PASS AA=a;AC=2;AF=0.72;AFR_AF=0.55;AMR_AF=0.72;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7185;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 48575292 rs9567972 C T 100 PASS AA=t;AC=2;AF=0.71;AFR_AF=0.51;AMR_AF=0.71;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7090;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +13 48919358 rs198617 T G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.80;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9415;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 49051012 rs3020646 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.67;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9122;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 49794650 rs9568169 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=0.9984;ERATE=0.0008;EUR_AF=0.28;LDAF=0.3430;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.55 +13 49951142 rs8002829 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.75;AMR_AF=0.50;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4657;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 49951193 rs8002858 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.75;AMR_AF=0.50;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4657;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 49951310 rs8002153 G T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.75;AMR_AF=0.50;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4662;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50035208 rs2077848 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.5164;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 50050620 rs7998427 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.75;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7459;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 50054308 rs4142285 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.8176;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 50054346 rs7996852 G T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.70;LDAF=0.8172;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 50057097 rs2057413 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.8176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 50057633 rs11619265 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5147;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 50080847 rs2031532 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.93;AMR_AF=0.75;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.7888;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 50098376 rs7332573 G T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.40;AMR_AF=0.12;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1961;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50102810 rs1046295 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.35;AMR_AF=0.52;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4776;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 50108252 rs7317982 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.37;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.53;LDAF=0.4823;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 50123622 rs3751384 G C 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.27;AMR_AF=0.60;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5356;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 50123649 rs3751383 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2614;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50123688 rs3751382 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.26;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2644;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50123832 rs3751381 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2609;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50125622 rs9568246 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2609;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50126382 rs2274278 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8681;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.77,-0.00 +13 50129615 rs2274284 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.88;AMR_AF=0.85;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8643;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 50134020 rs67275254 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2605;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50134099 rs17073145 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2605;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50134150 rs17073150 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2601;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50141276 rs9562899 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2601;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50141345 rs4942848 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.33;AMR_AF=0.68;AN=2;ASN_AF=0.64;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.67;LDAF=0.5882;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 50141362 rs9562900 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2601;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 50205025 rs3803185 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.07;AMR_AF=0.40;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3089;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 50296115 rs1127021 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 50510401 rs1063181 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.17;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1185;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.29,-0.00,-5.00 +13 50589952 rs200397876 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 52293532 rs912097 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9483;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 52373814 rs9535761 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.84;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7820;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 52440130 rs1054515 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3771;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 52509155 rs181250704 G A 100 PASS AA=G;AC=1;AF=0.0023;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0023;RSQ=0.9417;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 52511362 rs9535795 C G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.51;AMR_AF=0.60;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5215;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52511606 rs2282057 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.45;AMR_AF=0.51;AN=2;ASN_AF=0.39;AVGPOST=0.9884;ERATE=0.0061;EUR_AF=0.58;LDAF=0.4866;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52515354 rs1801249 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.40;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5284;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52523808 rs732774 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5202;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52524488 rs1061472 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.45;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4932;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52524560 rs9526811 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.06;AMR_AF=0.39;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.50;LDAF=0.3400;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52544805 rs1801244 C G 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.20;AMR_AF=0.42;AN=2;ASN_AF=0.46;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.52;LDAF=0.4149;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52548140 rs1801243 A C 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4258;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52602919 rs3825528 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4143;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52603194 rs3742289 G T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.45;AMR_AF=0.69;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6161;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 52603241 rs3742290 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0924;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 52603775 rs3742291 C T 100 PASS AA=c;AC=2;AF=0.56;AFR_AF=0.21;AMR_AF=0.67;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5580;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 52663491 rs9535861 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.28;AMR_AF=0.66;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5654;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 52676275 rs34756139 T G 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=0.9974;ERATE=0.0061;EUR_AF=0.13;LDAF=0.0922;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 52701637 rs1886544 T G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.29;AMR_AF=0.65;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5667;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 52971893 rs3803264 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.48;AMR_AF=0.64;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6132;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 53035783 rs7337054 T C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9976;RSQ=0.9546;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 53035925 rs7335867 A G 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 53232489 rs4542538 A G 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.96;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9680;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 53254082 rs4539485 T C 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.96;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9680;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 53254296 rs7986540 A G 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.96;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9680;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 53608632 rs2298231 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.44;AMR_AF=0.55;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5553;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 60582651 rs339540 C G 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.56;AMR_AF=0.64;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4461;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 60590299 rs2762134 C T 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.54;AVGPOST=0.9977;ERATE=0.0011;EUR_AF=0.71;LDAF=0.6906;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 60590307 rs12429010 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1769;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 61986918 rs3812872 C A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.76;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7888;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 61988107 rs4281600 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9927;ERATE=0.0052;EUR_AF=0.99;LDAF=0.9877;RSQ=0.7634;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +13 61989235 rs114633084 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9939;ERATE=0.0033;EUR_AF=0.01;LDAF=0.0337;RSQ=0.9269;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 67800419 rs41283952 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0325;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 67802339 rs8000556 A T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.59;AMR_AF=0.74;AN=2;ASN_AF=0.68;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7082;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 70370853 rs17727950 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.21;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2647;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 70681305 rs9564649 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.16;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1981;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 73293132 rs1046588 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.17;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0485;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 73301655 rs1465897 A C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.61;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8976;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.90,-0.00 +13 73329358 rs10887 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7568;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 73343039 rs2196979 C T 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7582;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 73350079 rs4883918 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.44;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3186;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 73366704 rs11148921 A T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.45;AN=2;ASN_AF=0.43;AVGPOST=0.9872;ERATE=0.0129;EUR_AF=0.29;LDAF=0.3179;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +13 73402075 rs9564921 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.13;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3209;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 74339104 rs3764134 G T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.38;AMR_AF=0.42;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3814;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 74518210 rs9573330 G A 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.33;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3085;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 75876389 rs2297208 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.49;AN=2;ASN_AF=0.16;AVGPOST=0.9967;ERATE=0.0008;EUR_AF=0.56;LDAF=0.3849;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 75884216 rs1062087 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.45;AMR_AF=0.69;AN=2;ASN_AF=0.79;AVGPOST=0.9978;ERATE=0.0035;EUR_AF=0.86;LDAF=0.7197;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 75936237 rs145011623 C T 100 PASS AA=C;AC=1;AF=0.0023;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0005;LDAF=0.0025;RSQ=0.9249;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 75936328 rs200840673 C G 100 PASS AA=C;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0010;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 75936438 rs138788209 C T 100 PASS AA=C;AC=1;AF=0.0023;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0007;LDAF=0.0025;RSQ=0.9113;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 75936519 rs7983969 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9972;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 76055397 rs9573565 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.29;AN=2;ASN_AF=0.22;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2227;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 76055820 rs7327548 G C 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.53;AMR_AF=0.38;AN=2;ASN_AF=0.23;AVGPOST=0.9942;ERATE=0.0010;EUR_AF=0.39;LDAF=0.3776;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.73,-0.00 +13 76135028 rs4884008 T A 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.29;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5708;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 76378447 rs75569760 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0073;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 76378459 rs625033 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.91;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9396;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 76397771 rs147546485 C T 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0028;RSQ=0.9763;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 76409436 rs2273997 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2080;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 76417101 rs920701 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.62;LDAF=0.5370;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 76423248 rs7986131 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.67;AMR_AF=0.77;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.75;LDAF=0.6681;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 77459383 rs142368706 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0064;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +13 77460068 rs694997 C T 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=0.9983;ERATE=0.0009;LDAF=0.0070;RSQ=0.8902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 77566090 rs77416795 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9952;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1263;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.16 +13 77589725 rs599115 A C 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.08;AMR_AF=0.54;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.3955;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 78146301 rs678047 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9922;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 78178451 rs6563011 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9355;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 78183167 rs912293 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 78188078 rs8002725 A G 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.36;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1894;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 78191824 rs4142585 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9990;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 78192207 rs9574090 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.70;LDAF=0.5672;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 78216915 rs2813739 C T 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1412;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 78477674 rs5348 A G 100 PASS AA=G;AC=1;AF=0.99;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 79894736 rs3187338 C T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.55;AMR_AF=0.37;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4219;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 79915389 rs7981067 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.55;AMR_AF=0.37;AN=2;ASN_AF=0.25;AVGPOST=0.9966;ERATE=0.0020;EUR_AF=0.49;LDAF=0.4205;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 79916973 rs3742118 A T 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.37;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4204;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 79929326 rs9530901 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.55;AMR_AF=0.37;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4219;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 79932617 rs7994560 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 79940811 rs7327603 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.57;AMR_AF=0.38;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.49;LDAF=0.4278;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 79946072 rs73564673 A T 100 PASS AA=a;AC=1;AF=0.11;AFR_AF=0.38;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9954;ERATE=0.0085;EUR_AF=0.04;LDAF=0.1076;RSQ=0.9823;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 79946104 rs9545093 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.55;AMR_AF=0.37;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4218;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 80910851 rs11911 A C 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.03;AMR_AF=0.41;AN=2;ASN_AF=0.43;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3199;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +13 80911525 rs504122 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.03;AMR_AF=0.41;AN=2;ASN_AF=0.43;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3091;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 86369120 rs3825413 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.89;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7615;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 92101213 rs75621401 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0288;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 92101216 rs200740688 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8689;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +13 92408505 rs3783054 T G 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.15;AMR_AF=0.37;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3967;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 95097956 rs755684 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.82;AMR_AF=0.64;AN=2;ASN_AF=0.23;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.81;LDAF=0.6331;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 95264604 rs9524559 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.19;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2916;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 95275576 rs4296139 C G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.94;AMR_AF=0.48;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5672;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 95673791 rs3742106 A C 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.30;AMR_AF=0.43;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3976;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 95673939 rs9524765 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9898;ERATE=0.0102;EUR_AF=0.98;LDAF=0.9326;RSQ=0.9478;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 95696470 rs12875235 T G 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.15;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0672;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 95705453 rs11568643 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0347;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 95714942 rs11568656 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0663;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 95714976 rs57270423 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.74;AMR_AF=0.78;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7751;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 95726541 rs1189466 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.93;AMR_AF=0.95;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.8908;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 95727780 rs1678339 T C 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.88;AMR_AF=0.94;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.8780;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 95815415 rs3765534 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0352;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 95858978 rs2274405 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.70;AMR_AF=0.57;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6088;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 95858996 rs2274406 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.37;AMR_AF=0.54;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5287;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 95861804 rs899494 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.85;LDAF=0.8212;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0096;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 95862896 rs899496 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.64;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7298;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.99,-0.00 +13 95899354 rs4148437 A G 100 PASS AA=A;AC=2;AF=0.24;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.2404;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 96293631 rs9561921 G A 100 PASS AA=G;AC=2;AF=0.12;AFR_AF=0.14;AMR_AF=0.12;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.07;LDAF=0.1210;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 96505952 rs3099360 T C 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.47;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3576;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 96513187 rs34859372 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.36;LDAF=0.2711;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.62,-0.00,-5.00 +13 96540141 rs9525075 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9712;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 96540143 rs9525076 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9711;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 96579462 rs9525086 T C 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.16;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3592;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 96600271 rs189009329 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 96638636 rs816142 A C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8570;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 98658358 rs633161 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.89;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6102;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 98829176 rs628778 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.38;AMR_AF=0.84;AN=2;ASN_AF=0.93;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7927;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 98896776 rs7318267 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.19;AMR_AF=0.36;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4013;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99088006 rs1792 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.32;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.25;LDAF=0.2985;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99093094 rs2146998 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +13 99098318 rs2274053 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.63;AMR_AF=0.67;AN=2;ASN_AF=0.63;AVGPOST=0.9979;ERATE=0.0008;EUR_AF=0.80;LDAF=0.6961;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99098470 rs2274054 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.34;AMR_AF=0.66;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.79;LDAF=0.6197;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99098882 rs2281766 A C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.43;AMR_AF=0.66;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6464;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99100474 rs9517310 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.27;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.28;LDAF=0.2120;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99105395 rs8481 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.15;AVGPOST=0.9985;ERATE=0.0026;EUR_AF=0.26;LDAF=0.2224;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99112680 rs4771305 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8540;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 99115927 rs2296149 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.82;AMR_AF=0.71;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7847;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99118590 rs9584854 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.27;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.27;LDAF=0.2335;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99127252 rs9513430 C G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.56;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4722;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99356612 rs1339067 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.84;AMR_AF=0.69;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5922;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 99358401 rs4646227 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.12;AMR_AF=0.03;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.01;LDAF=0.0544;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99376181 rs2297322 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.33;AMR_AF=0.26;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2757;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 99447005 rs812808 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.76;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8005;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 99448441 rs9554522 T A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.34;AMR_AF=0.38;AN=2;ASN_AF=0.58;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4509;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99449755 rs1289315 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.57;AMR_AF=0.52;AN=2;ASN_AF=0.56;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5824;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99457431 rs2296984 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=0.9926;ERATE=0.0125;EUR_AF=0.22;LDAF=0.2285;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99459891 rs9557078 A C 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.38;AMR_AF=0.37;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4708;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99462593 rs2282134 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.63;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4133;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99502260 rs2296990 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.20;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0980;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.36 +13 99505632 rs9513497 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.36;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4151;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99515230 rs199666071 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.0013;LDAF=0.0016;RSQ=0.8665;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +13 99533897 rs2296994 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1566;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99536031 rs9517474 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.56;AMR_AF=0.77;AN=2;ASN_AF=0.57;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6738;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +13 99537202 rs2274641 C A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.56;AMR_AF=0.77;AN=2;ASN_AF=0.58;AVGPOST=0.9918;ERATE=0.0044;EUR_AF=0.78;LDAF=0.6790;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 99537217 rs2274642 G T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.58;AMR_AF=0.77;AN=2;ASN_AF=0.57;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6775;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 99537942 rs2296998 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1591;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99540394 rs3737021 T C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.18;AVGPOST=0.9888;ERATE=0.0075;EUR_AF=0.14;LDAF=0.1391;RSQ=0.9648;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99540395 rs1928104 A G 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.55;AMR_AF=0.76;AN=2;ASN_AF=0.56;AVGPOST=0.9943;ERATE=0.0018;EUR_AF=0.77;LDAF=0.6628;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 99540406 rs3737023 A C 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.15;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1909;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99540500 rs2274643 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.37;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4721;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 99575568 rs12428661 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1761;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 99578219 rs12429249 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.20;LDAF=0.1774;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 100199224 rs3751373 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.60;AMR_AF=0.37;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.33;LDAF=0.3805;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 100888122 rs538229 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1142;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 100921056 rs4306370 A G 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9314;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 101020695 rs9518061 A G 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.49;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6143;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 101264633 rs1572641 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.55;AMR_AF=0.50;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5174;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 101287340 rs946837 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.41;AMR_AF=0.23;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3826;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 101287365 rs946838 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.70;AMR_AF=0.88;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8633;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 101287404 rs2297943 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.05;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2975;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 101288992 rs3803256 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.42;AMR_AF=0.32;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0018;EUR_AF=0.43;LDAF=0.4552;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 101289969 rs3809372 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.08;AMR_AF=0.39;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3012;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 101289998 rs7985718 C A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.52;AMR_AF=0.62;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6997;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 101294428 rs9585476 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.40;AMR_AF=0.23;AN=2;ASN_AF=0.58;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3824;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 101315175 rs1283210 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.52;AMR_AF=0.71;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7601;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 101321067 rs2791680 T C 100 PASS AA=c;AC=2;AF=0.76;AFR_AF=0.52;AMR_AF=0.71;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7592;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +13 101322622 rs1283201 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.41;AMR_AF=0.23;AN=2;ASN_AF=0.59;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3966;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 101795422 rs661585 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.59;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4791;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 101944752 rs570252 C T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.62;AMR_AF=0.54;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5727;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 102106464 rs2297701 C T 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.21;AMR_AF=0.21;AN=2;ASN_AF=0.43;AVGPOST=0.9961;ERATE=0.0007;EUR_AF=0.14;LDAF=0.2423;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +13 102366825 rs2281991 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2002;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 102367888 rs9518501 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1668;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 103289409 rs9518799 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.22;LDAF=0.1393;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 103301537 rs664660 G T 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.97;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.90;LDAF=0.8683;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 103346806 rs2390760 C G 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7178;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 103484060 rs2181676 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9264;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 103491876 rs4771435 A G 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.18;AMR_AF=0.34;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0015;EUR_AF=0.30;LDAF=0.2994;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 103514091 rs7982448 T C 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 103518769 rs6491716 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8415;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 103527849 rs9514066 G C 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 103527930 rs9514067 G C 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 103698630 rs279940 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.94;AMR_AF=0.81;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8437;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 103701788 rs145541774 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 103703579 rs8000956 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.19;AMR_AF=0.49;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4132;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 103705044 rs188096 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.95;AMR_AF=0.81;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8446;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 106119446 rs2391191 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.06;AMR_AF=0.40;AN=2;ASN_AF=0.65;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3871;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 106142235 rs778294 C T 100 PASS AA=c;AC=1;AF=0.23;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2267;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 107145463 rs7995379 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 108518444 rs1771137 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.32;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9945;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1556;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 109459020 rs9301323 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.32;AMR_AF=0.76;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6705;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 109472733 rs41308564 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0535;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 109518578 rs9559428 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0864;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 109661359 rs3825491 C G 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.27;AMR_AF=0.45;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 109707827 rs9521141 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0947;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 109777503 rs157024 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1298;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 109793246 rs80260507 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.07;AN=2;AVGPOST=0.9941;ERATE=0.0007;EUR_AF=0.11;LDAF=0.0637;RSQ=0.9615;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.900:-0.03,-1.19,-5.00 +13 109793474 rs28705148 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9746;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.95,-0.00 +13 109793720 rs7986595 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9611;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +13 110813523 rs2275842 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.16;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1892;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 110813532 rs2275843 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.16;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1896;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 110813709 rs1133219 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.36;AMR_AF=0.25;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2940;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 110817171 rs1816884 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.39;AN=2;ASN_AF=0.73;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.39;LDAF=0.4292;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 110819457 rs652572 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.33;AMR_AF=0.68;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5850;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 110819460 rs1778817 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.48;AMR_AF=0.69;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6206;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 110819586 rs589985 G A 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.54;AMR_AF=0.75;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0025;EUR_AF=0.65;LDAF=0.6500;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0168;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 110839550 rs536174 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 110850770 rs683309 T C 100 PASS AA=t;AC=2;AF=0.91;AFR_AF=0.86;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9078;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 110851014 rs496916 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3666;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 110857823 rs482757 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.38;AMR_AF=0.56;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.61;LDAF=0.5923;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 110857895 rs677877 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.38;AMR_AF=0.56;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5928;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 110859069 rs9588116 G C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.53;AMR_AF=0.43;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0015;EUR_AF=0.38;LDAF=0.3878;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 110859743 rs598893 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.38;AMR_AF=0.56;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5919;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 110861785 rs645114 C G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.92;AMR_AF=0.88;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.83;LDAF=0.8423;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 110866265 rs9521650 G A 100 PASS AA=g;AC=2;AF=0.15;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.23;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1510;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 110895092 rs41275104 A G 100 PASS AA=a;AC=1;AF=0.16;AFR_AF=0.34;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1609;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 110959356 rs9515185 C G 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.29;AMR_AF=0.42;AN=2;ASN_AF=0.62;AVGPOST=0.9445;ERATE=0.0032;EUR_AF=0.41;LDAF=0.4364;RSQ=0.9137;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.44 +13 111077197 rs4238272 G A 100 PASS AA=A;AC=1;AF=0.95;AFR_AF=0.84;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9462;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 111098226 rs4103 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.37;AMR_AF=0.48;AN=2;ASN_AF=0.59;AVGPOST=0.9948;ERATE=0.0084;EUR_AF=0.53;LDAF=0.5021;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111099122 rs7326449 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.61;AMR_AF=0.75;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7127;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111102042 rs76425569 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.29;AVGPOST=0.9931;ERATE=0.0019;EUR_AF=0.38;LDAF=0.2694;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.72,-0.09 +13 111102126 rs74941798 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.28;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.41;LDAF=0.2752;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.09,-0.00,-3.44 +13 111102183 rs34734302 A G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.33;AVGPOST=0.9960;ERATE=0.0012;EUR_AF=0.51;LDAF=0.4349;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +13 111111173 rs7990214 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.66;AMR_AF=0.56;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5010;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111111235 rs7990383 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.72;AMR_AF=0.56;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5156;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111114751 rs7992330 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1805;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +13 111117745 rs3803236 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.67;AMR_AF=0.56;AN=2;ASN_AF=0.28;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5241;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111121717 rs9515229 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.71;AMR_AF=0.56;AN=2;ASN_AF=0.28;AVGPOST=0.9979;ERATE=0.0014;EUR_AF=0.60;LDAF=0.5368;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +13 111130519 rs2281974 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.61;AMR_AF=0.33;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.31;LDAF=0.4275;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-3.15,-0.00,-5.00 +13 111132556 rs9521803 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2684;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 111145676 rs2391833 G C 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.12;AMR_AF=0.50;AN=2;ASN_AF=0.52;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4299;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 111154058 rs439831 T A 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9433;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111154061 rs409858 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9433;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111154160 rs2281968 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.42;AMR_AF=0.50;AN=2;ASN_AF=0.34;AVGPOST=0.9977;ERATE=0.0006;EUR_AF=0.59;LDAF=0.4732;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111155428 rs401316 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111155773 rs438758 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=0.97;AVGPOST=0.9960;ERATE=0.0009;EUR_AF=1.00;LDAF=0.9806;RSQ=0.9221;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +13 111156499 rs4771683 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.66;AMR_AF=0.93;AN=2;ASN_AF=0.91;AVGPOST=0.9508;ERATE=0.0761;EUR_AF=0.87;LDAF=0.8241;RSQ=0.8517;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111158874 rs445348 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.73;AMR_AF=0.81;AN=2;ASN_AF=0.55;AVGPOST=0.9922;ERATE=0.0017;EUR_AF=0.89;LDAF=0.7512;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 111176393 rs419244 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.72;AMR_AF=0.89;AN=2;ASN_AF=0.96;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.87;LDAF=0.8619;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111290630 rs41275126 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1047;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 111290880 rs330563 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.49;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.27;LDAF=0.3590;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 111293915 rs1043886 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.16;LDAF=0.1027;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 111298304 rs141996297 G A 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +13 111298392 rs436462 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.61;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9989;ERATE=0.0030;EUR_AF=0.30;LDAF=0.4340;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 111319754 rs4628819 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.65;AMR_AF=0.69;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7756;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111335406 rs146773721 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0142;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 111358488 rs3818496 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.26;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=0.9406;ERATE=0.0054;EUR_AF=0.67;LDAF=0.5921;RSQ=0.9127;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-3.66,-0.51,-0.16 +13 111368316 rs9555726 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.25;AMR_AF=0.68;AN=2;ASN_AF=0.75;AVGPOST=0.9965;ERATE=0.0008;EUR_AF=0.68;LDAF=0.6036;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 111567039 rs56924528 G C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.57;AMR_AF=0.65;AN=2;ASN_AF=0.19;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.62;LDAF=0.5019;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.74,-0.09 +13 111806245 rs61966721 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.35;AN=2;ASN_AF=0.65;AVGPOST=0.9914;ERATE=0.0063;EUR_AF=0.39;LDAF=0.4384;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 111955465 rs1555751 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.97;AN=2;ASN_AF=0.90;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9326;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 111980537 rs1359428 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.26;AMR_AF=0.60;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5278;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 113030674 rs2296896 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1737;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113030839 rs61960772 G C 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1686;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113052388 rs2296895 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.75;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=0.9802;ERATE=0.0287;EUR_AF=0.53;LDAF=0.6032;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.900:-0.20,-0.43,-5.00 +13 113053470 rs10816 T A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.78;AMR_AF=0.63;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6316;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113176817 rs200753524 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113333684 rs7338610 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.17;AMR_AF=0.51;AN=2;ASN_AF=0.70;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.54;LDAF=0.4915;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113439586 rs11616475 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2659;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113478754 rs112622425 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0013;EUR_AF=0.01;LDAF=0.0387;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 113479820 rs368865 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.99;AMR_AF=0.84;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8456;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 113496566 rs946006 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.48;AMR_AF=0.39;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3739;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 113508839 rs9549573 G C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.96;AMR_AF=0.71;AN=2;ASN_AF=0.62;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7053;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 113527967 rs1320525 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.30;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3862;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 113634091 rs6577024 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2270;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.25 +13 113720476 rs2297192 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.15;LDAF=0.2135;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113728781 rs3814264 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.05;AMR_AF=0.30;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2602;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113739518 rs546818 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.43;AMR_AF=0.51;AN=2;ASN_AF=0.29;AVGPOST=0.9972;ERATE=0.0011;EUR_AF=0.62;LDAF=0.4705;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 113792754 rs2251102 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.65;AMR_AF=0.88;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8231;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 113801737 rs5960 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.47;AMR_AF=0.68;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.6585;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +13 113801843 rs2031184 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9460;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 113812962 rs2273971 G A 100 PASS AA=g;AC=2;AF=0.71;AFR_AF=0.66;AMR_AF=0.74;AN=2;ASN_AF=0.45;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7093;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.06,-0.00 +13 113818900 rs564081 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9589;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 113854715 rs3751413 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.44;AVGPOST=0.9863;ERATE=0.0334;EUR_AF=0.72;LDAF=0.5852;RSQ=0.9781;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 113888201 rs2146408 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.72;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9291;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 113889474 rs2287250 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.58;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 113917767 rs4907602 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 113965176 rs9577503 C A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9838;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114018038 rs9549753 C A 100 PASS AA=c;AC=2;AF=0.43;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9924;ERATE=0.0010;EUR_AF=0.51;LDAF=0.4317;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-0.60,-0.20,-0.90 +13 114138107 rs41288602 G A 100 PASS AA=G;AC=2;AF=0.10;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0974;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114150107 rs11164135 C T 100 PASS AA=C;AC=2;AF=0.10;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1032;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114175038 rs7319493 G A 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.21;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1595;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114201742 rs2259387 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.76;AMR_AF=0.46;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4511;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114202575 rs2259398 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.56;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.27;LDAF=0.3719;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114303764 rs17852631 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.11;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=0.9954;ERATE=0.0064;EUR_AF=0.18;LDAF=0.1766;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114309226 rs11164142 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.61;AVGPOST=0.9979;ERATE=0.0026;EUR_AF=0.46;LDAF=0.4544;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114312354 rs9285616 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.49,-0.00 +13 114502416 rs7400029 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.79;AMR_AF=0.64;AN=2;ASN_AF=0.74;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.63;LDAF=0.6931;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 114507836 rs7323732 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.79;AMR_AF=0.72;AN=2;ASN_AF=0.85;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7566;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 114507840 rs7332019 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.26;AMR_AF=0.55;AN=2;ASN_AF=0.85;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5551;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 114507965 rs9577888 C T 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1001;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-3.22,-0.00,-5.00 +13 114508032 rs60580207 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0997;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 114514704 rs77554503 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1125;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 114514771 rs57648467 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1120;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +13 114524944 rs7400002 A G 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9949;ERATE=0.0009;EUR_AF=0.24;LDAF=0.3608;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.05 +13 114530114 rs1803628 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.08;LDAF=0.1760;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 114773126 rs9562086 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.66;AMR_AF=0.50;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.43;LDAF=0.5370;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114774813 rs6560943 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.88;AMR_AF=0.65;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7007;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114778593 rs7322518 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.67;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5939;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.77,-0.00 +13 114780648 rs2274719 A C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.90;AMR_AF=0.66;AN=2;ASN_AF=0.67;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.63;LDAF=0.7070;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114780764 rs2274717 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.90;AMR_AF=0.66;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7075;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114787021 rs2274714 G A 100 PASS AA=G;AC=2;AF=0.04;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.0026;LDAF=0.0429;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +13 114787031 rs2274713 T G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.90;AMR_AF=0.66;AN=2;ASN_AF=0.67;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7077;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +13 114792842 rs3829340 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.88;AMR_AF=0.65;AN=2;ASN_AF=0.67;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7004;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +13 114806453 rs200389361 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +13 115037613 rs2274638 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.82;AMR_AF=0.46;AN=2;ASN_AF=0.59;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5325;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 247900 rs7313003 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.15;AN=2;ASN_AF=0.36;AVGPOST=0.9584;ERATE=0.0049;EUR_AF=0.23;LDAF=0.2402;RSQ=0.9139;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:0.950:-0.11,-0.65,-4.70 +12 247923 rs75677829 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.28;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=0.9815;ERATE=0.0008;EUR_AF=0.08;LDAF=0.1133;RSQ=0.9364;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 248155 rs55923022 C T 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.29;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9807;ERATE=0.0017;EUR_AF=0.09;LDAF=0.1221;RSQ=0.9370;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-2.86,-0.01,-1.67 +12 248202 rs56204927 C G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9653;ERATE=0.0079;EUR_AF=0.58;LDAF=0.6297;RSQ=0.9460;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.58,-0.13 +12 274572 rs11061700 G C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9595;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 274647 rs4980859 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.32;LDAF=0.2686;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 275065 rs2291922 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2696;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 280349 rs2291919 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2692;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 301843 rs646569 A G 100 PASS AA=G;AC=1;AF=0.92;AFR_AF=0.98;AMR_AF=0.96;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9211;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 319111 rs526690 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.75;AMR_AF=0.44;AN=2;ASN_AF=0.32;AVGPOST=0.9990;ERATE=0.0017;EUR_AF=0.52;LDAF=0.5060;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 319125 rs557881 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.73;AMR_AF=0.43;AN=2;ASN_AF=0.32;AVGPOST=0.9990;ERATE=0.0019;EUR_AF=0.51;LDAF=0.4979;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 347068 rs2289957 T A 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.2998;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 520947 rs4980895 A C 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.34;AMR_AF=0.13;AN=2;ASN_AF=0.31;AVGPOST=0.9990;ERATE=0.0010;EUR_AF=0.09;LDAF=0.2106;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 540994 rs7310504 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.81;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7870;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 547683 rs735295 T C 100 PASS AA=t;AC=2;AF=0.30;AFR_AF=0.27;AMR_AF=0.36;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3006;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 550924 rs55916201 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0091;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 657404 rs11063529 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1924;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 661656 rs7298766 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2633;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 662448 rs758790 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.90;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.65;LDAF=0.7988;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 662838 rs1056008 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.38;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=0.9978;ERATE=0.0008;EUR_AF=0.28;LDAF=0.2640;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 670611 rs191163323 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0064;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 772458 rs3782851 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0965;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 772673 rs4980959 C A 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.39;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3774;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 862989 rs3168640 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9801;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 863517 rs3858703 G A 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.38;AMR_AF=0.60;AN=2;ASN_AF=0.90;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6657;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 936468 rs2158502 C G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.55;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7381;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 939302 rs10774466 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.54;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.75;LDAF=0.7368;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 971291 rs2286007 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0695;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 987482 rs1012729 G A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.54;AMR_AF=0.74;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7129;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 990912 rs956868 A C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.87;AMR_AF=0.89;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 994014 rs10849577 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 994487 rs7955371 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 998365 rs12828016 G T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.53;AMR_AF=0.35;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 1003837 rs2301880 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.25;LDAF=0.2467;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 1017197 rs4766334 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 1025613 rs199595727 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0005;LDAF=0.0026;RSQ=0.8995;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 1040373 rs7303748 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.55;AMR_AF=0.47;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5223;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 1748834 rs2270036 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.85;AMR_AF=0.87;AN=2;ASN_AF=0.68;AVGPOST=0.9549;ERATE=0.0068;EUR_AF=0.81;LDAF=0.7860;RSQ=0.9001;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.77,-0.01 +12 1863728 rs11061971 A T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.75;AMR_AF=0.61;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5882;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 1889823 rs767870 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.34;AMR_AF=0.84;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7473;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 1902905 rs33912216 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=0.9948;ERATE=0.0018;EUR_AF=0.09;LDAF=0.1151;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 1919543 rs2286377 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.26;AMR_AF=0.49;AN=2;ASN_AF=0.62;AVGPOST=0.9959;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5157;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 1949939 rs33972365 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.24;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.12;LDAF=0.1162;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 1955786 rs11836202 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.46;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.01;LDAF=0.1648;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 1955890 rs7137876 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.89;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9957;ERATE=0.0011;EUR_AF=0.83;LDAF=0.8907;RSQ=0.9832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.88,-0.00 +12 1965369 rs2286372 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.47;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1676;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 1983744 rs737102 T C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.52;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.11;LDAF=0.1892;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 1983782 rs758160 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.15;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0887;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 1988167 rs7966806 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.34;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1385;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 1989018 rs60945277 T C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.57;AMR_AF=0.11;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.12;LDAF=0.2015;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 1995118 rs61386831 C T 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.20;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=0.9988;ERATE=0.0026;EUR_AF=0.11;LDAF=0.1055;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 1995403 rs10735005 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9259;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 2024092 rs73038195 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0483;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 2058245 rs2240612 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.54;LDAF=0.5750;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 2659082 rs11062272 G T 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.48;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2843;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 2721137 rs216008 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.26;AMR_AF=0.20;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2637;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 2760708 rs216045 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.75;AVGPOST=0.9983;ERATE=0.0011;EUR_AF=0.76;LDAF=0.6829;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 2760970 rs1990322 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.17;AMR_AF=0.73;AN=2;ASN_AF=0.75;AVGPOST=0.9933;ERATE=0.0018;EUR_AF=0.72;LDAF=0.6053;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +12 2787058 rs2302731 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0846;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 2788810 rs72552065 C T 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9957;ERATE=0.0007;EUR_AF=0.05;LDAF=0.0301;RSQ=0.9469;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 2788879 rs1051375 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.18;AMR_AF=0.67;AN=2;ASN_AF=0.63;AVGPOST=0.9901;ERATE=0.0005;EUR_AF=0.73;LDAF=0.5689;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 2968169 rs3742076 A G 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.56;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9989;ERATE=0.0022;EUR_AF=0.15;LDAF=0.2883;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 2968458 rs2215292 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9961;RSQ=0.9543;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 3047466 rs2074987 G A 100 PASS AA=N;AC=2;AF=0.51;AFR_AF=0.65;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.42;LDAF=0.5078;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 3131206 rs3741952 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.24;AMR_AF=0.77;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6841;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 3149483 rs7294804 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.24;AMR_AF=0.76;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6760;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 3310439 rs740776 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.24;AMR_AF=0.53;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 3387555 rs651243 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.37;AMR_AF=0.46;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3528;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 3391032 rs564247 T G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.41;AMR_AF=0.40;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0019;EUR_AF=0.34;LDAF=0.3314;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 3702219 rs4765741 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.62;LDAF=0.6443;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 3768682 rs12426518 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-5.00 +12 4459032 rs7309402 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.31;AMR_AF=0.21;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.09;LDAF=0.2774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 4554548 rs7358740 G C 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9268;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4662210 rs17850028 T C 100 PASS AA=T;AC=2;AF=0.05;AFR_AF=0.01;AMR_AF=0.14;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0540;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4705317 rs3741925 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2619;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 4708150 rs3741926 T A 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.32;AMR_AF=0.31;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3245;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 4735737 rs2072358 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2980;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 4736495 rs1990312 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9890;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4736631 rs11063265 A G 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9890;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4736677 rs11063266 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9452;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4736690 rs10774251 A G 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9840;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4737042 rs7972737 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.06;AMR_AF=0.45;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3131;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 4737318 rs7960207 A G 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.70;AMR_AF=0.94;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8325;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4737459 rs2072356 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.61;AMR_AF=0.81;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7285;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4737715 rs2072355 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.61;AMR_AF=0.81;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7253;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4768354 rs7972657 A C 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.54;AMR_AF=0.74;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6993;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4771682 rs2267549 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.21;AMR_AF=0.49;AN=2;ASN_AF=0.33;AVGPOST=0.9982;ERATE=0.0016;EUR_AF=0.44;LDAF=0.3662;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4830000 rs10849133 T G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.51;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.37;LDAF=0.4108;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4835882 rs2286578 T G 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.17;AMR_AF=0.41;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3546;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4853806 rs34776842 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=0.9758;ERATE=0.0691;EUR_AF=0.14;LDAF=0.1251;RSQ=0.9095;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 4853915 rs12312983 T G 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.24;AMR_AF=0.44;AN=2;ASN_AF=0.49;AVGPOST=0.9941;ERATE=0.0059;EUR_AF=0.43;LDAF=0.4048;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +12 4873163 rs1468556 G T 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.39;AVGPOST=0.9990;ERATE=0.0018;EUR_AF=0.42;LDAF=0.3730;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4881766 rs2286581 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.41;AMR_AF=0.53;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4926;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4881775 rs2286582 T C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.42;AMR_AF=0.53;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4936;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 4919267 rs758534 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.43;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=0.9952;ERATE=0.0010;EUR_AF=0.45;LDAF=0.4400;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 5154462 rs2359641 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9810;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 5603632 rs6332 G A 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.54;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=0.9938;ERATE=0.0114;EUR_AF=0.50;LDAF=0.4927;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0110;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 5603935 rs10849277 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1005;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 5674754 rs2277398 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9947;ERATE=0.0005;EUR_AF=0.46;LDAF=0.3609;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 5721962 rs3741837 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9951;ERATE=0.0031;EUR_AF=1.00;LDAF=0.9600;RSQ=0.9579;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 5841841 rs2277401 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.14;AMR_AF=0.43;AN=2;ASN_AF=0.59;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4168;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 6091000 rs216867 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.71;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.88;LDAF=0.8577;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6091164 rs216868 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3094;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6094845 rs177702 G A 100 PASS AA=g;AC=2;AF=0.73;AFR_AF=0.64;AMR_AF=0.81;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.77;LDAF=0.7307;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6105387 rs216902 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.31;AMR_AF=0.43;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4625;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +12 6127943 rs216310 A G 100 PASS AA=.;AC=2;AF=0.70;AFR_AF=0.90;AMR_AF=0.73;AN=2;ASN_AF=0.71;AVGPOST=0.9542;ERATE=0.0154;EUR_AF=0.55;LDAF=0.6890;RSQ=0.9342;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-1.16,-0.03 +12 6128443 rs216311 T C 100 PASS AA=.;AC=2;AF=0.73;AFR_AF=0.94;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=0.9888;ERATE=0.0005;EUR_AF=0.59;LDAF=0.7273;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +12 6143984 rs216321 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.97;AMR_AF=0.93;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8967;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6145529 rs216325 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.82;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0022;EUR_AF=0.65;LDAF=0.7370;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6153659 rs216293 G T 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.24;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5283;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +12 6344600 rs2072372 C A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.80;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.53;LDAF=0.5541;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6421495 rs740842 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.62;AMR_AF=0.44;AN=2;ASN_AF=0.28;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4941;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 6427052 rs1468603 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.24;AMR_AF=0.42;AN=2;ASN_AF=0.29;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.63;LDAF=0.4195;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.18 +12 6428116 rs4764497 T G 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.31;AMR_AF=0.43;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.63;LDAF=0.4445;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 6435571 rs10849441 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.28;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.51;LDAF=0.3670;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 6435575 rs10849442 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.68;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4656;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 6435753 rs2302350 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.2951;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 6439255 rs10849443 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6439470 rs12426675 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.22;LDAF=0.2890;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6440009 rs1800693 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.35;AMR_AF=0.32;AN=2;ASN_AF=0.14;AVGPOST=0.9982;ERATE=0.0025;EUR_AF=0.43;LDAF=0.3192;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 6442346 rs1800692 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.97;AMR_AF=0.71;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6922;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.11,-0.00 +12 6450945 rs767455 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.36;AMR_AF=0.36;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3250;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 6457062 rs2228576 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.95;AMR_AF=0.75;AN=2;ASN_AF=0.56;AVGPOST=0.9755;ERATE=0.0005;EUR_AF=0.68;LDAF=0.7180;RSQ=0.9590;SNPSOURCE=LOWCOV,EXOME;THETA=0.0203;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +12 6458084 rs3764875 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.59;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=0.9967;ERATE=0.0076;EUR_AF=0.64;LDAF=0.6809;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0137;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6495275 rs2364480 C A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.98;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8192;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6499533 rs2286599 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1244;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6500105 rs12354 T G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.99;AMR_AF=0.76;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8119;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6560473 rs2532502 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9966;RSQ=0.9314;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6575191 rs2534718 A T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9823;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6601980 rs4764600 C G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.52;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3395;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6604418 rs6489718 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.47;AMR_AF=0.37;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3263;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6619284 rs714774 C G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.98;AMR_AF=0.82;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7879;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6623382 rs4764604 A G 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.43;AMR_AF=0.37;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6623389 rs4764605 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7016;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6631169 rs917634 C A 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.59;AMR_AF=0.58;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5443;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6635567 rs7311174 A T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7901;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6637845 rs2072374 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7896;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6638116 rs740850 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.53;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3314;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6638666 rs7316224 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.53;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3314;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6639088 rs1043262 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6647198 rs45536836 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0083;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6711147 rs1639122 C A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.88;AMR_AF=0.42;AN=2;ASN_AF=0.45;AVGPOST=0.9980;ERATE=0.0011;EUR_AF=0.42;LDAF=0.5321;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6760367 rs76327967 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.16;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0622;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 6840209 rs3168600 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.52;AMR_AF=0.62;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6419;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6887020 rs870849 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.58;AMR_AF=0.67;AN=2;ASN_AF=0.82;AVGPOST=0.9961;ERATE=0.0008;EUR_AF=0.60;LDAF=0.6635;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6926363 rs1055141 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.77;AMR_AF=0.66;AN=2;ASN_AF=0.93;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.57;LDAF=0.7247;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6928075 rs12821756 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.81;AMR_AF=0.66;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0015;EUR_AF=0.57;LDAF=0.7330;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 6933787 rs1051409 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.57;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9989;ERATE=0.0017;EUR_AF=0.47;LDAF=0.5304;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7046745 rs12426246 G C 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9919;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1363;RSQ=0.9728;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.24 +12 7047143 rs7969685 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.25;AN=2;ASN_AF=0.01;AVGPOST=0.9926;ERATE=0.0004;EUR_AF=0.37;LDAF=0.1983;RSQ=0.9829;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.82,-0.01,-5.00 +12 7053362 rs915997 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.94;AN=2;ASN_AF=0.90;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.85;LDAF=0.9079;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7055860 rs2301262 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.77;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=0.9803;ERATE=0.0069;EUR_AF=0.74;LDAF=0.7767;RSQ=0.9584;SNPSOURCE=LOWCOV,EXOME;THETA=0.0112;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 7065281 rs10744724 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.43;AMR_AF=0.92;AN=2;ASN_AF=0.97;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8287;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7065406 rs7963446 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.43;AMR_AF=0.92;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8286;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7065576 rs2110071 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.43;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8304;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7065635 rs2110072 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9446;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7066800 rs186735874 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=0.9989;ERATE=0.0005;LDAF=0.0015;RSQ=0.6612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 7069425 rs28579154 G C 100 PASS AA=g;AC=2;AF=0.57;AFR_AF=0.43;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.8441;ERATE=0.0901;EUR_AF=0.61;LDAF=0.5601;RSQ=0.6109;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:1.450:-5.00,-0.30,-0.30 +12 7069620 rs759052 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.54;AMR_AF=0.83;AN=2;ASN_AF=0.86;AVGPOST=0.9956;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7959;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +12 7171620 rs7965055 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.06;AN=2;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.08;LDAF=0.0787;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 7175047 rs1143664 A G 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.19;AMR_AF=0.06;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0811;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 7249598 rs3742089 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.52;AMR_AF=0.45;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0024;EUR_AF=0.31;LDAF=0.3780;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 7277236 rs2290237 T A 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.38;LDAF=0.2884;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 7287886 rs6488452 A C 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.58;AMR_AF=0.80;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6672;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.51,-0.00 +12 7287914 rs2278822 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.63;AMR_AF=0.81;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7129;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7463241 rs7968241 A T 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.22;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.57;LDAF=0.4128;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 7551022 rs6488268 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9959;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7551050 rs6488269 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9959;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7585971 rs10845159 A G 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.03;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.55;LDAF=0.3599;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7638020 rs10743939 G A 100 PASS AA=g;AC=2;AF=0.51;AFR_AF=0.13;AMR_AF=0.70;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.76;LDAF=0.5114;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7649484 rs4883263 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.60;AMR_AF=0.85;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.7952;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7649653 rs4883264 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.13;AMR_AF=0.72;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5160;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7805236 rs2302515 C G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.54;AMR_AF=0.70;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.6947;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 7805467 rs2080127 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.49;AMR_AF=0.70;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.89;LDAF=0.6838;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 7869701 rs11055388 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9913;ERATE=0.0063;EUR_AF=1.00;LDAF=0.9253;RSQ=0.9634;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 7894056 rs73056605 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.05;AMR_AF=0.34;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2281;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7945559 rs4294629 T C 100 PASS AA=.;AC=2;AF=0.38;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3775;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 7945640 rs2889551 G T 100 PASS AA=.;AC=2;AF=0.33;AFR_AF=0.27;AMR_AF=0.48;AN=2;ASN_AF=0.04;AVGPOST=0.9870;ERATE=0.0151;EUR_AF=0.52;LDAF=0.3319;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 7945670 rs4354764 G A 100 PASS AA=.;AC=2;AF=0.35;AFR_AF=0.32;AMR_AF=0.49;AN=2;ASN_AF=0.05;AVGPOST=0.9836;ERATE=0.0030;EUR_AF=0.54;LDAF=0.3564;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +12 7945757 rs4438116 C T 100 PASS AA=.;AC=1;AF=0.18;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.0035;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.30;LDAF=0.1769;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 7945829 rs4242903 G C 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9947;RSQ=0.9585;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +12 7947017 rs1860931 T C 100 PASS AA=.;AC=2;AF=0.42;AFR_AF=0.44;AMR_AF=0.54;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4255;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.53,-0.00 +12 7947304 rs4012939 T C 100 PASS AA=.;AC=2;AF=0.39;AFR_AF=0.40;AMR_AF=0.52;AN=2;ASN_AF=0.11;AVGPOST=0.9773;ERATE=0.0092;EUR_AF=0.54;LDAF=0.3892;RSQ=0.9730;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.63,-0.12 +12 7966975 rs10845982 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9829;ERATE=0.0086;EUR_AF=0.34;LDAF=0.2624;RSQ=0.9710;SNPSOURCE=EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-1.24,-0.03,-5.00 +12 7967076 rs10845983 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.34;AN=2;ASN_AF=0.12;AVGPOST=0.9993;ERATE=0.0022;EUR_AF=0.33;LDAF=0.2136;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-1.74,-0.01,-5.00 +12 7985460 rs17728008 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.24;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1755;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 8082367 rs17847967 T C 100 PASS AA=t;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.17;AVGPOST=0.9830;ERATE=0.0257;EUR_AF=0.14;LDAF=0.1360;RSQ=0.9512;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 8085547 rs2541279 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2491;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.13 +12 8197424 rs35642012 C G 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.12;AN=2;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.14;LDAF=0.0736;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 8245239 rs2231750 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=0.9994;ERATE=0.0012;EUR_AF=0.25;LDAF=0.1511;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 8276432 rs7295783 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.53;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8761;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 8278181 rs2024301 A T 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.40;AMR_AF=0.56;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5566;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 8329574 rs10770295 C T 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.47;AMR_AF=0.48;AN=2;ASN_AF=0.51;AVGPOST=0.9801;ERATE=0.0058;EUR_AF=0.54;LDAF=0.5021;RSQ=0.9672;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.38 +12 8329652 rs10743251 A G 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.42;AMR_AF=0.46;AN=2;ASN_AF=0.48;AVGPOST=0.9754;ERATE=0.0061;EUR_AF=0.52;LDAF=0.4758;RSQ=0.9665;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 8329700 rs10743253 A C 100 PASS AA=.;AC=1;AF=0.47;AFR_AF=0.28;AMR_AF=0.47;AN=2;ASN_AF=0.52;AVGPOST=0.9904;ERATE=0.0058;EUR_AF=0.55;LDAF=0.4692;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 8329833 rs11043758 G A 100 PASS AA=.;AC=1;AF=0.45;AFR_AF=0.35;AMR_AF=0.46;AN=2;ASN_AF=0.48;AVGPOST=0.9594;ERATE=0.0162;EUR_AF=0.50;LDAF=0.4514;RSQ=0.9507;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 8374770 rs9668474 G A 100 PASS AA=.;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9838;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 8376110 rs9738115 T C 100 PASS AA=.;AC=1;AF=0.67;AFR_AF=0.20;AMR_AF=0.64;AN=2;ASN_AF=0.93;AVGPOST=0.9489;ERATE=0.0132;EUR_AF=0.78;LDAF=0.6563;RSQ=0.9362;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.300:-5.00,-0.91,-0.06 +12 8376181 rs7139128 C G 100 PASS AA=.;AC=1;AF=0.75;AFR_AF=0.30;AMR_AF=0.73;AN=2;ASN_AF=0.99;AVGPOST=0.9922;ERATE=0.0006;EUR_AF=0.87;LDAF=0.7482;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +12 8612336 rs10770736 G C 100 PASS AA=.;AC=2;AF=0.78;AFR_AF=0.55;AMR_AF=0.84;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7797;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 8693333 rs4620776 G A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.80;AMR_AF=0.62;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7098;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 8757481 rs2028373 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.31;AMR_AF=0.65;AN=2;ASN_AF=0.47;AVGPOST=0.9428;ERATE=0.0104;EUR_AF=0.63;LDAF=0.5165;RSQ=0.9261;SNPSOURCE=LOWCOV,EXOME;THETA=0.0194;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 8926011 rs2969089 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9004512 rs1860927 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.73;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9972;ERATE=0.0017;EUR_AF=0.85;LDAF=0.8642;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0107;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9004892 rs1860926 C A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9775;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9013755 rs1860967 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.81;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4595;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9016573 rs10219561 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9761;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9020489 rs7308811 A G 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.64;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8496;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9020912 rs1476910 A G 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.63;AMR_AF=0.71;AN=2;ASN_AF=0.54;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6746;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9083336 rs1805777 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.45;AMR_AF=0.82;AN=2;ASN_AF=0.72;AVGPOST=0.9669;ERATE=0.0397;EUR_AF=0.87;LDAF=0.7221;RSQ=0.9523;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 1|0:1.000:-2.08,-0.01,-2.09 +12 9090668 rs3026261 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1403;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9099034 rs4140911 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.45;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2752;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9220729 rs7955940 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.52;AMR_AF=0.41;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3168;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9230038 rs2377682 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.47;AMR_AF=0.40;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3071;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9232268 rs669 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.40;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2655;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9242924 rs2193005 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.24;AMR_AF=0.39;AN=2;ASN_AF=0.07;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2538;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9248233 rs226405 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9980;RSQ=0.9335;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9254019 rs78698660 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0004;LDAF=0.0159;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9260280 rs226388 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.76;AMR_AF=0.52;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4604;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9264946 rs226383 T G 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.30;AMR_AF=0.39;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2666;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9268473 rs226380 A C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.77;AMR_AF=0.52;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4626;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9303296 rs10842971 A T 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.32;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1993;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9305473 rs10771357 T C 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6761;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 9307373 rs2377741 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9909;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9309995 rs12822596 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2016;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9310383 rs140851445 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9312951 rs57006764 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2642;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 9317784 rs2277413 A G 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.28;AMR_AF=0.27;AN=2;ASN_AF=0.49;AVGPOST=0.9867;ERATE=0.0419;EUR_AF=0.28;LDAF=0.3357;RSQ=0.9803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9333749 rs919209 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.36;AMR_AF=0.24;AN=2;ASN_AF=0.37;AVGPOST=0.9992;ERATE=0.0096;EUR_AF=0.24;LDAF=0.3010;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 9334761 rs12814448 A T 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.40;AMR_AF=0.42;AN=2;ASN_AF=0.46;AVGPOST=0.9862;ERATE=0.1134;EUR_AF=0.44;LDAF=0.4364;RSQ=0.9115;SNPSOURCE=EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9344878 rs2075394 A G 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.35;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3264;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9345273 rs10771407 A G 100 PASS AA=a;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8964;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9346792 rs12230214 G C 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.24;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3012;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9750669 rs1135816 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3944;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9833524 rs3764022 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2865;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9833628 rs3764021 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.59;AMR_AF=0.49;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4694;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 9885526 rs12304510 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.65;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4980;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 9906067 rs1051065 T C 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.37;AMR_AF=0.72;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7056;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10015082 rs253147 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5946;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10015177 rs253146 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5626;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10124336 rs2984956 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5813;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10131684 rs607567 T G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.71;AMR_AF=0.67;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7235;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10131939 rs536947 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1637;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +12 10137557 rs479499 A C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.66;AMR_AF=0.67;AN=2;ASN_AF=0.91;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.61;LDAF=0.7089;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +12 10147850 rs521040 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.42;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2819;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10149406 rs581949 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5887;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10149851 rs583903 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9862;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10151642 rs612593 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9894;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10165469 rs476474 A G 100 PASS AA=a;AC=2;AF=0.94;AFR_AF=0.92;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.91;LDAF=0.9372;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10167277 rs637790 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.92;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10271055 rs7959451 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.85;AMR_AF=0.68;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.82;LDAF=0.6658;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10271087 rs16910526 A C 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0338;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10312648 rs13306593 C A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3455;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10312914 rs3816844 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3455;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.66 +12 10313075 rs3736235 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3455;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10313358 rs3736232 C G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3455;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10339210 rs11053660 C A 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3209;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10370763 rs73058099 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0690;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10462052 rs10772256 T G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9525;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10525740 rs1049172 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.50;AMR_AF=0.74;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7134;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10532111 rs2255353 T G 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.59;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7637;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +12 10532326 rs2255336 T C 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.59;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7637;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10532434 rs2617151 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8213;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 10560957 rs2617170 T C 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.47;AMR_AF=0.66;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5987;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10562025 rs1841957 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5442;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10562089 rs1841958 A C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7303;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +12 10570965 rs2682495 C G 100 PASS AA=N;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10571042 rs2741882 A G 100 PASS AA=a;AC=2;AF=0.95;AFR_AF=0.91;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=0.9638;ERATE=0.0010;EUR_AF=0.97;LDAF=0.9474;RSQ=0.7550;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10571091 rs2682494 T G 100 PASS AA=N;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9932;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9831;RSQ=0.8477;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +12 10571106 rs2682493 G C 100 PASS AA=g;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9924;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9815;RSQ=0.8559;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +12 10572544 rs143188402 T C 100 PASS AA=N;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.93;AN=2;ASN_AF=0.94;AVGPOST=0.9530;ERATE=0.0005;EUR_AF=0.87;LDAF=0.8823;RSQ=0.8444;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:1.950:-2.82,-0.45,-0.19 +12 10572982 rs2741881 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9893;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +12 10573094 rs2682491 C G 100 PASS AA=c;AC=1;AF=0.46;AFR_AF=0.21;AMR_AF=0.53;AN=2;ASN_AF=0.53;AVGPOST=0.9566;ERATE=0.0063;EUR_AF=0.54;LDAF=0.4606;RSQ=0.9416;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.150:-2.17,-0.01,-2.05 +12 10573095 rs2682490 A G 100 PASS AA=N;AC=2;AF=0.87;AFR_AF=0.77;AMR_AF=0.91;AN=2;ASN_AF=0.91;AVGPOST=0.9461;ERATE=0.0054;EUR_AF=0.88;LDAF=0.8604;RSQ=0.8569;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:1.850:-4.70,-0.36,-0.25 +12 10573145 rs2682489 C T 100 PASS AA=t;AC=1;AF=0.62;AFR_AF=0.58;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9171;ERATE=0.0913;EUR_AF=0.58;LDAF=0.6139;RSQ=0.8904;SNPSOURCE=EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +12 10583696 rs2981593 C T 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.27;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=0.9847;ERATE=0.0087;EUR_AF=0.54;LDAF=0.5360;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10587111 rs61917677 A G 100 PASS AA=a;AC=2;AF=0.76;AFR_AF=0.58;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=0.9825;ERATE=0.0107;EUR_AF=0.83;LDAF=0.7628;RSQ=0.9580;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.18,-0.00 +12 10588530 rs75545535 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.32;AN=2;ASN_AF=0.25;AVGPOST=0.9670;ERATE=0.0446;EUR_AF=0.30;LDAF=0.2590;RSQ=0.9070;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +12 10588581 rs28403159 T C 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.41;AVGPOST=0.9706;ERATE=0.0271;EUR_AF=0.37;LDAF=0.3310;RSQ=0.9456;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:1.650:-5.00,-0.72,-0.09 +12 10603670 rs2253849 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10763175 rs11053879 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.14;AMR_AF=0.38;AN=2;ASN_AF=0.81;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3898;RSQ=0.9988;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10763205 rs11053880 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.14;AMR_AF=0.38;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3898;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10763236 rs10845182 G C 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.45;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9968;ERATE=0.0034;EUR_AF=0.76;LDAF=0.7539;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10772983 rs1870194 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0020;EUR_AF=0.35;LDAF=0.4497;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10775195 rs1078437 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.38;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0024;EUR_AF=0.36;LDAF=0.3043;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10782115 rs3759259 T C 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.35;AMR_AF=0.67;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6179;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10783729 rs2290717 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.14;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2673;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10854537 rs2305849 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2550;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10854718 rs139903785 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0170;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10865971 rs2305848 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2496;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 10871667 rs33016 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9520;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10875488 rs1126501 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.49;AVGPOST=0.9895;ERATE=0.0012;EUR_AF=0.17;LDAF=0.2759;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.050:-3.02,-0.47,-0.18 +12 10875525 rs1042085 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.38;AVGPOST=0.9928;ERATE=0.0011;EUR_AF=0.07;LDAF=0.1668;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.89,-0.26,-0.34 +12 10958658 rs2537817 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.60;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8990;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10959031 rs1548803 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.19;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5448;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10962115 rs3741845 A G 100 PASS AA=a;AC=1;AF=0.58;AFR_AF=0.25;AMR_AF=0.60;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5758;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 10978402 rs597468 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9579;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10999708 rs1047699 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.41;AMR_AF=0.84;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7720;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 10999780 rs1063193 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.17;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.61;LDAF=0.5400;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11000934 rs2227296 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.21;AN=2;ASN_AF=0.23;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2305;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 11061122 rs1015443 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.16;AMR_AF=0.61;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5402;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11083677 rs10772391 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.50;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9836;ERATE=0.0094;EUR_AF=0.86;LDAF=0.7917;RSQ=0.9704;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 11091432 rs3741843 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.52;AMR_AF=0.85;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8080;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11091693 rs7138535 T A 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2370;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 11138683 rs10772397 C T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.20;AMR_AF=0.64;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5741;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11138852 rs1376251 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.05;AMR_AF=0.41;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3972;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11149532 rs1450839 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4109;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11149711 rs10845279 C A 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4109;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11149720 rs10845280 A G 100 PASS AA=a;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4109;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11149769 rs10845281 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4109;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11150033 rs12226919 G T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.09;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4154;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11150046 rs12226920 G T 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4108;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11150054 rs79420812 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.30;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.21;LDAF=0.1842;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11150214 rs11054142 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4107;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11150240 rs7135018 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.19;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2134;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 11150319 rs11054143 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4106;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11174276 rs10772420 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.39;AMR_AF=0.53;AN=2;ASN_AF=0.44;AVGPOST=0.9969;ERATE=0.0027;EUR_AF=0.60;LDAF=0.5005;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 11174327 rs72475481 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.34;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=0.9986;ERATE=0.0341;EUR_AF=0.48;LDAF=0.4426;RSQ=0.9885;SNPSOURCE=EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 11174753 rs1868769 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.42;AMR_AF=0.79;AN=2;ASN_AF=0.90;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7531;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11175087 rs12313469 G A 100 PASS AA=.;AC=1;AF=0.40;AFR_AF=0.37;AMR_AF=0.44;AN=2;ASN_AF=0.22;AVGPOST=0.9977;ERATE=0.0007;EUR_AF=0.53;LDAF=0.4026;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 11338555 rs1669409 A T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.42;AMR_AF=0.85;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7939;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 11338559 rs1669410 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.23;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2248;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11338589 rs1817104 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1961;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11338613 rs1650017 C G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.31;AMR_AF=0.74;AN=2;ASN_AF=0.86;AVGPOST=0.9821;ERATE=0.0022;EUR_AF=0.73;LDAF=0.6742;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11338614 rs1669411 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.31;AMR_AF=0.74;AN=2;ASN_AF=0.86;AVGPOST=0.9826;ERATE=0.0013;EUR_AF=0.73;LDAF=0.6748;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11338669 rs1669412 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.23;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2253;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11338750 rs1451772 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.23;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2253;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 11338781 rs1669413 C A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.42;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=0.9950;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7885;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11338957 rs5020531 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.18;AMR_AF=0.64;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5685;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 11338983 rs1650019 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.42;AMR_AF=0.85;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7938;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11339020 rs35969491 T A 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.18;AMR_AF=0.64;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5686;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 11461292 rs1052808 C G 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.58;AMR_AF=0.84;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7720;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11461836 rs6488386 T C 100 PASS AA=.;AC=2;AF=0.91;AFR_AF=0.88;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=0.9979;ERATE=0.0024;EUR_AF=0.92;LDAF=0.9133;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11462275 rs1834857 A G 100 PASS AA=.;AC=2;AF=0.80;AFR_AF=0.62;AMR_AF=0.87;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.88;LDAF=0.8041;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 11506893 rs10845341 C T 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.61;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9864;ERATE=0.0069;EUR_AF=0.77;LDAF=0.7452;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.73,-0.01 +12 12006544 rs17210957 G A 100 PASS AA=A;AC=2;AF=0.24;AFR_AF=0.21;AMR_AF=0.19;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.14;LDAF=0.2354;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 12240199 rs879732 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.41;AMR_AF=0.51;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5053;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 12284915 rs1012672 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0444;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 12301898 rs2302685 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8780;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 12334006 rs10082834 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0599;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 12336966 rs7978064 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.35;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1390;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 12337061 rs11829211 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0590;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 12483275 rs1861676 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.53;AMR_AF=0.67;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5791;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 12483713 rs4763282 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.47;AMR_AF=0.67;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5668;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 12483927 rs4763818 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.65;AMR_AF=0.89;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8117;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 12618715 rs967648 T C 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9450;RSQ=0.9798;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.91,-0.01 +12 12814818 rs4763862 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.71;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0065;EUR_AF=0.94;LDAF=0.8968;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 12871099 rs2066827 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.74;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=0.9841;ERATE=0.0639;EUR_AF=0.23;LDAF=0.2975;RSQ=0.9781;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 13061294 rs2075288 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.33;LDAF=0.3813;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 13095214 rs148322311 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0206;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 13102605 rs4630382 G A 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.19;AVGPOST=0.9980;ERATE=0.0011;EUR_AF=0.41;LDAF=0.2368;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 13142174 rs850918 C G 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.33;AMR_AF=0.87;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7723;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 13214537 rs3741818 A G 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.49;AMR_AF=0.70;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6458;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 13221606 rs1386005 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 13256353 rs10772620 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.64;AMR_AF=0.48;AN=2;ASN_AF=0.73;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.31;LDAF=0.5194;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 13716638 rs1806191 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.17;AMR_AF=0.51;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3003;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 13717508 rs1806201 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.11;AMR_AF=0.29;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.28;LDAF=0.3068;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 13764774 rs1805482 G A 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2162;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 13828659 rs11055581 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1220;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 14577892 rs2231909 A T 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.11;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14591220 rs4479040 G A 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.64;AMR_AF=0.57;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5096;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14656768 rs1600 G C 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.65;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4932;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14688644 rs7957558 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.70;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9182;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14794062 rs10772800 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.45;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8629;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14804994 rs7313027 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.74;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14829893 rs1420635 A C 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9909;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14834427 rs58911033 G T 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.76;AMR_AF=0.97;AN=2;ASN_AF=0.97;AVGPOST=0.9916;ERATE=0.0167;EUR_AF=0.98;LDAF=0.9253;RSQ=0.9637;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14924028 rs16910259 A G 100 PASS AA=A;AC=2;AF=0.17;AFR_AF=0.26;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1731;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 14976553 rs17761825 G C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1230;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 14993439 rs11276 C T 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2806;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 14993608 rs3088189 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2811;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 14993854 rs1861698 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2708;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 15035081 rs4236 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.56;AMR_AF=0.43;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3547;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 15073831 rs2445382 G C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.60;AMR_AF=0.59;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6806;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 15090837 rs3748297 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.39;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2842;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 15095558 rs4703 C G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.56;AVGPOST=0.9978;ERATE=0.0091;EUR_AF=0.58;LDAF=0.5239;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 15103605 rs2430711 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 15262179 rs1055151 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.24;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2582;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 15273957 rs2247568 A G 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.72;AMR_AF=0.79;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6793;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 15650356 rs138770041 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0137;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 15652330 rs4764197 T C 100 PASS AA=C;AC=1;AF=0.93;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9301;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 15656832 rs4764199 T A 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.76;AMR_AF=0.88;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7773;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 15731744 rs1024843 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.20;AMR_AF=0.65;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5838;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 15748020 rs1558787 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.32;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8236;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 16050808 rs10772879 T A 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.29;AMR_AF=0.66;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6883;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 16516710 rs3759207 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2811;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 18443809 rs7133666 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0416;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 18443955 rs7133903 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0417;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 18446881 rs7301521 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0416;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 18499777 rs10770357 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 18649057 rs12312266 C T 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.44;AMR_AF=0.36;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3223;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +12 18747387 rs12827507 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.22;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1627;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 18747528 rs11044211 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.57;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.23;LDAF=0.3122;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 18762450 rs2277328 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1596;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 18849071 rs3825081 G C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.59;AMR_AF=0.43;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4630;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 19406863 rs6486942 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.64;AMR_AF=0.91;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0022;EUR_AF=0.96;LDAF=0.7856;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 19626314 rs28703623 T A 100 PASS AA=t;AC=2;AF=0.69;AFR_AF=0.74;AMR_AF=0.60;AN=2;ASN_AF=0.69;AVGPOST=0.8681;ERATE=0.0852;EUR_AF=0.68;LDAF=0.6589;RSQ=0.7446;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +12 19626322 rs11044583 T A 100 PASS AA=t;AC=2;AF=0.67;AFR_AF=0.63;AMR_AF=0.62;AN=2;ASN_AF=0.69;AVGPOST=0.8790;ERATE=0.0381;EUR_AF=0.71;LDAF=0.6522;RSQ=0.8113;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +12 19626326 rs12370241 T A 100 PASS AA=t;AC=1;AF=0.51;AFR_AF=0.56;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.8202;ERATE=0.0755;EUR_AF=0.51;LDAF=0.5089;RSQ=0.7065;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.04,-1.09 +12 20766559 rs10743380 C T 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.82;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0016;EUR_AF=0.94;LDAF=0.9259;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 20783099 rs7304499 A C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=0.9942;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5508;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 20801855 rs9284155 C T 100 PASS AA=c;AC=2;AF=0.91;AFR_AF=0.75;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9610;ERATE=0.0167;EUR_AF=0.93;LDAF=0.8951;RSQ=0.8656;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +12 20893108 rs2271656 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.08;AMR_AF=0.55;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4520;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 20903757 rs10841611 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.22;AMR_AF=0.54;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 20905250 rs6487138 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.22;AMR_AF=0.53;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 21011480 rs4149117 T G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.38;AMR_AF=0.86;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21013948 rs3764009 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.38;AMR_AF=0.86;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7098;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21015760 rs7311358 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.38;AMR_AF=0.86;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7102;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21036411 rs2053098 A G 100 PASS AA=.;AC=2;AF=0.71;AFR_AF=0.38;AMR_AF=0.85;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7106;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21054369 rs3764006 G A 100 PASS AA=.;AC=2;AF=0.69;AFR_AF=0.27;AMR_AF=0.81;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.87;LDAF=0.6884;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21176135 rs1546308 T C 100 PASS AA=.;AC=2;AF=0.96;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9607;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21176247 rs1546307 A G 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.25;AMR_AF=0.83;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21201663 rs11045689 G A 100 PASS AA=.;AC=2;AF=0.47;AFR_AF=0.12;AMR_AF=0.64;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4676;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +12 21207346 rs7312369 T C 100 PASS AA=.;AC=2;AF=0.48;AFR_AF=0.15;AMR_AF=0.64;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4757;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21220349 rs1910163 A T 100 PASS AA=.;AC=2;AF=0.46;AFR_AF=0.07;AMR_AF=0.63;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4576;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.88,-0.00 +12 21331599 rs4149057 T C 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.15;AMR_AF=0.51;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.3930;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21331987 rs2291076 C T 100 PASS AA=c;AC=2;AF=0.30;AFR_AF=0.05;AMR_AF=0.40;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3048;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21590621 rs2058464 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4853;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.51 +12 21590788 rs2110165 C A 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4862;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.72,-0.01,-5.00 +12 21593404 rs4762702 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9831;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21598264 rs1963817 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.49;AVGPOST=0.9929;ERATE=0.0096;EUR_AF=0.49;LDAF=0.4030;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 21608043 rs2192183 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4793;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21608891 rs2302500 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4794;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21613923 rs7309539 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4794;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21614903 rs3825287 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4858;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21615664 rs3782660 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4795;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21621737 rs61926324 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.32;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=0.9936;ERATE=0.0013;EUR_AF=0.36;LDAF=0.3330;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-3.42 +12 21623122 rs13035 T G 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.12;AMR_AF=0.42;AN=2;ASN_AF=0.46;AVGPOST=0.9968;ERATE=0.0009;EUR_AF=0.48;LDAF=0.3823;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.850:-0.00,-2.18,-5.00 +12 21627745 rs2159943 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.12;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3808;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 21628791 rs3752648 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.51;AMR_AF=0.46;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4831;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21654831 rs1060126 G T 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.32;AMR_AF=0.77;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7298;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.46,-0.00 +12 21684029 rs3765093 G A 100 PASS AA=a;AC=1;AF=0.42;AFR_AF=0.70;AMR_AF=0.35;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4182;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 21689882 rs10431213 T A 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.06;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3749;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21711111 rs7977474 G C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.58;AMR_AF=0.74;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7282;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21712545 rs1871136 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7527;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21712574 rs1871137 C T 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7527;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21713308 rs4639981 T A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.68;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7715;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21713402 rs2306180 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7532;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 21789968 rs1677134 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9781;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21791272 rs1650289 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9529;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21794865 rs1626023 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21797029 rs1650294 A G 100 PASS AA=a;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9698;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21799999 rs1540405 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9529;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21807432 rs1677078 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9529;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 21807640 rs1650315 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9529;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 22005003 rs2307024 T G 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.26;AMR_AF=0.33;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3168;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 22005314 rs139408145 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 22017422 rs697250 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 22025700 rs17846773 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0154;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 22047151 rs704216 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 22063115 rs10770865 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9731;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 22063737 rs4762719 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 22063749 rs4762720 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 22068849 rs3759236 G T 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.60;AMR_AF=0.54;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6490;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 22078838 rs2277405 T G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.74;AMR_AF=0.58;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6923;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 22354921 rs704219 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.71;AMR_AF=0.84;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7848;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 22401911 rs4762896 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.30;AN=2;ASN_AF=0.06;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1899;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 22602796 rs2063573 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.79;AMR_AF=0.73;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.89;LDAF=0.6421;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 23696116 rs7485662 C T 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.45;AMR_AF=0.48;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.49;LDAF=0.4693;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 23998888 rs7980561 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.57;AMR_AF=0.72;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7034;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 24985653 rs3736212 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9948;ERATE=0.0004;EUR_AF=0.11;LDAF=0.0867;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 25031449 rs6487436 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.92;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.9063;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 25147300 rs699030 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9705;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.96,-0.00 +12 25148755 rs864161 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9704;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 25242595 rs7969931 C G 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.61;AMR_AF=0.76;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7440;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 25243115 rs1908946 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.21;AMR_AF=0.56;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5274;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 25261735 rs859146 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 25299921 rs11047863 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.27;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7340;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 25311489 rs10842496 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2742;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 25343516 rs10842501 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.33;AMR_AF=0.54;AN=2;ASN_AF=0.77;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5534;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 25368462 rs4362222 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 25656706 rs78120781 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.07;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0394;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 25679729 rs149733853 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 25679932 rs1705419 G A 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.61;AMR_AF=0.76;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7852;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 25699523 rs278990 A G 100 PASS AA=g;AC=1;AF=0.79;AFR_AF=0.61;AMR_AF=0.77;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7920;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 26217567 rs1495660 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.1233;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 26580814 rs1818135 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.3007;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 26596618 rs2220406 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.67;AMR_AF=0.85;AN=2;ASN_AF=0.77;AVGPOST=0.9959;ERATE=0.0005;EUR_AF=0.85;LDAF=0.7883;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 26806955 rs2230380 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1512;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 26809316 rs2230379 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.56;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3176;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 26810777 rs2291264 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.21;AMR_AF=0.46;AN=2;ASN_AF=0.65;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4251;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 26810816 rs2291263 T G 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3082;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 26812245 rs2306549 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3194;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 26868322 rs1900941 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.26;AN=2;ASN_AF=0.19;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2646;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 26878577 rs17480784 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1174;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 27059224 rs1488052 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8953;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27175494 rs3963548 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.86;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9428;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27234878 rs74075111 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.28;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1641;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 27234914 rs61741737 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.28;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1641;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 27470866 rs6487601 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9812;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27533367 rs4964060 A G 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.17;AMR_AF=0.69;AN=2;ASN_AF=0.31;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.56;LDAF=0.4309;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27553741 rs1037920 A C 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2235;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 27786415 rs7965657 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2628;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 27800746 rs2194816 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=1.00;LDAF=0.9950;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0129;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27813903 rs7133222 C T 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9966;RSQ=0.9162;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27820302 rs2033024 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.95;AMR_AF=0.90;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.96;LDAF=0.9246;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27826780 rs2052673 T G 100 PASS AA=t;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.87;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0021;EUR_AF=0.83;LDAF=0.7961;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27849795 rs929948 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.48;AVGPOST=0.9833;ERATE=0.0507;EUR_AF=0.53;LDAF=0.5316;RSQ=0.9760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 27849796 rs929949 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.83;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9867;ERATE=0.0279;EUR_AF=0.94;LDAF=0.9235;RSQ=0.9386;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27867706 rs11049106 C T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.89;AMR_AF=0.77;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7454;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 27944858 rs2288232 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.14;AMR_AF=0.47;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0055;EUR_AF=0.52;LDAF=0.3548;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 28605426 rs10771427 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6700;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 29689157 rs36070392 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0119;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 29689264 rs77662534 T C 100 PASS AA=t;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0119;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 29736480 rs2113879 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.49;AMR_AF=0.29;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3674;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 29736523 rs2288230 G T 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.29;AMR_AF=0.28;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3218;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 29736553 rs2113880 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.49;AMR_AF=0.29;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3675;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 30787228 rs10843797 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.27;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1755;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 30823971 rs1054426 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.64;AMR_AF=0.29;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4886;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 30868002 rs13656 C T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.82;AMR_AF=0.38;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.5732;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 30878859 rs79960947 G C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.82;AMR_AF=0.38;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.5736;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 30881809 rs2304630 T C 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.77;AMR_AF=0.38;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5316;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 31132479 rs35096 A C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.97;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9450;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 31135418 rs2075332 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1636;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 31135478 rs35089 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.93;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9501;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 31135579 rs2075333 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.60;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.71;LDAF=0.6973;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.81,-0.00 +12 31144884 rs35076 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.41;AMR_AF=0.45;AN=2;ASN_AF=0.95;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5461;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 31238075 rs4931428 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.72;AMR_AF=0.57;AN=2;ASN_AF=0.76;AVGPOST=0.9608;ERATE=0.0134;EUR_AF=0.42;LDAF=0.5943;RSQ=0.9447;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.21,-0.01,-1.67 +12 31240862 rs7308754 A T 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.63;AMR_AF=0.54;AN=2;ASN_AF=0.76;AVGPOST=0.9572;ERATE=0.0163;EUR_AF=0.39;LDAF=0.5646;RSQ=0.9418;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-1.60,-0.01,-4.00 +12 31240925 rs7308773 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.75;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=0.9930;ERATE=0.0039;EUR_AF=0.43;LDAF=0.6291;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:0.950:-0.18,-0.47,-2.40 +12 31240960 rs7309189 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.76;AMR_AF=0.59;AN=2;ASN_AF=0.83;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6335;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-0.06,-0.89,-5.00 +12 31242314 rs2005897 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.50;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=0.9832;ERATE=0.0086;EUR_AF=0.41;LDAF=0.4783;RSQ=0.9753;SNPSOURCE=LOWCOV,EXOME;THETA=0.0090;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 31242399 rs3881298 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.58;AMR_AF=0.53;AN=2;ASN_AF=0.69;AVGPOST=0.9613;ERATE=0.0171;EUR_AF=0.34;LDAF=0.5153;RSQ=0.9532;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:0.700:-0.40,-0.22,-5.00 +12 31242440 rs2075318 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.75;AMR_AF=0.57;AN=2;ASN_AF=0.78;AVGPOST=0.9788;ERATE=0.0055;EUR_AF=0.43;LDAF=0.6112;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:0.850:-0.06,-0.86,-5.00 +12 31244846 rs1808348 C G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.76;AMR_AF=0.60;AN=2;ASN_AF=0.81;AVGPOST=0.9818;ERATE=0.0031;EUR_AF=0.43;LDAF=0.6264;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.600:-0.09,-0.71,-4.70 +12 31249225 rs9788047 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.58;AMR_AF=0.51;AN=2;ASN_AF=0.74;AVGPOST=0.9144;ERATE=0.0171;EUR_AF=0.33;LDAF=0.5102;RSQ=0.9064;SNPSOURCE=EXOME;THETA=0.0112;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.02,-1.40 +12 31249708 rs71455622 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0487;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:0.950:-0.19,-0.46,-2.42 +12 31249861 rs2075322 C G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.75;AMR_AF=0.59;AN=2;ASN_AF=0.85;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.43;LDAF=0.6365;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 31253995 rs1046456 C T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.77;AVGPOST=0.9715;ERATE=0.0080;EUR_AF=0.38;LDAF=0.5634;RSQ=0.9642;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 31254752 rs7966272 C T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.75;AMR_AF=0.60;AN=2;ASN_AF=0.82;AVGPOST=0.9960;ERATE=0.0010;EUR_AF=0.44;LDAF=0.6339;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 31254959 rs7966523 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.73;AMR_AF=0.56;AN=2;ASN_AF=0.81;AVGPOST=0.9581;ERATE=0.0092;EUR_AF=0.42;LDAF=0.6080;RSQ=0.9413;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 0|1:0.900:-0.48,-0.48,-0.48 +12 31256368 rs3925642 G T 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.76;AMR_AF=0.58;AN=2;ASN_AF=0.83;AVGPOST=0.9888;ERATE=0.0012;EUR_AF=0.43;LDAF=0.6346;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-2.00,-0.00,-3.17 +12 31256517 rs140335402 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9938;ERATE=0.0006;EUR_AF=0.10;LDAF=0.0523;RSQ=0.9521;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:0.850:-0.12,-0.62,-4.22 +12 31256546 rs1046457 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.60;AMR_AF=0.53;AN=2;ASN_AF=0.74;AVGPOST=0.9388;ERATE=0.0116;EUR_AF=0.34;LDAF=0.5284;RSQ=0.9222;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.650:-0.06,-0.86,-5.00 +12 31648723 rs4931506 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.56;AMR_AF=0.70;AN=2;ASN_AF=0.83;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6465;RSQ=0.9986;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 31648826 rs4930979 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.10;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.42;LDAF=0.4153;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 31815167 rs61736289 G T 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0283;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 31944691 rs3759294 A C 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1809;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 32134240 rs2388982 C T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.72;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.7399;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 32134638 rs2166807 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.91;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8391;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 32134815 rs16919122 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1239;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 32134943 rs10771894 A G 100 PASS AA=a;AC=1;AF=0.37;AFR_AF=0.43;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.36;LDAF=0.3675;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 32135441 rs3759301 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9465;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 32138924 rs7302975 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8269;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 32459070 rs41521147 T G 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1536;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0086;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 32481093 rs3748275 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3168;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 32487644 rs10844188 T A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.24;AMR_AF=0.22;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3368;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 32490764 rs2270786 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.1956;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 32530580 rs11051966 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0805;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 32735236 rs904582 C T 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.73;AMR_AF=0.51;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.39;LDAF=0.4469;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 32764184 rs10844253 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 32777362 rs11052110 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.25;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2316;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 32778039 rs7970584 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.40;AMR_AF=0.27;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.33;LDAF=0.2957;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 32778581 rs11052113 T C 100 PASS AA=t;AC=1;AF=0.13;AFR_AF=0.23;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1307;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 32974245 rs10772008 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.64;AMR_AF=0.62;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.82;LDAF=0.6215;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 38712142 rs6582584 C G 100 PASS AA=g;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9655;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.95,-0.00 +12 38715000 rs35518352 A G 100 PASS AA=a;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9985;ERATE=0.0013;EUR_AF=0.45;LDAF=0.2708;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 39064484 rs77100936 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0040;LDAF=0.0722;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +12 39064630 rs7980889 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.1952;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 39087609 rs3759139 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.06;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2771;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 39087687 rs826877 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9598;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 39096664 rs7960616 T A 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2811;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 39233771 rs3803020 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.08;AMR_AF=0.49;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.50;LDAF=0.3163;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 39695445 rs2271477 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0832;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 40037727 rs10735878 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.66;AMR_AF=0.83;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7496;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 40619082 rs2256408 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 40626230 rs1352879 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.77;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9470;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 40631791 rs10878245 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.58;LDAF=0.4428;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 40657700 rs7308720 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1015;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40702911 rs7133914 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0998;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40702987 rs11175964 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0717;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40713759 rs1896252 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.55;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5352;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40713834 rs1427263 C A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.77;AMR_AF=0.71;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.6545;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40713873 rs11176013 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.55;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5347;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40715013 rs7307276 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.55;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5353;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40716015 rs7137665 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.77;AMR_AF=0.71;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.69;LDAF=0.6546;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40716260 rs10878371 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5348;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 40753013 rs79074615 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0100;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 40758652 rs3761863 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.46;AMR_AF=0.55;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.5494;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 41330611 rs935105 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1124;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 41337435 rs1056019 C T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.58;AMR_AF=0.66;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5855;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 41374697 rs10784981 C A 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.08;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0955;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 41387106 rs7309797 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.0855;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 41387110 rs278911 C G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.51;AMR_AF=0.20;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2534;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 41421642 rs12367345 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.16;LDAF=0.0987;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 41946453 rs285585 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 41961745 rs17582686 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0485;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 41967677 rs3747556 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1526;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 42835294 rs202148947 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +12 42854205 rs3747562 A G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.49;AMR_AF=0.50;AN=2;ASN_AF=0.44;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4551;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 42854208 rs3747563 A G 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.20;AMR_AF=0.43;AN=2;ASN_AF=0.30;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3197;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 42859961 rs12230583 A G 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.22;AMR_AF=0.41;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3026;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 44338153 rs6582491 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9908;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 44926334 rs2270479 T A 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4250;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 45173571 rs1123078 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.27;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2409;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 45410075 rs1224442 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.69;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6805;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 45417666 rs2731038 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.66;AMR_AF=0.71;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0035;EUR_AF=0.58;LDAF=0.6788;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 45429911 rs2160987 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.2089;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 45444264 rs11182811 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.26;AMR_AF=0.36;AN=2;ASN_AF=0.34;AVGPOST=0.9901;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3717;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.61,-0.00,-3.70 +12 45751145 rs145896287 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 46215163 rs2059404 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.37;AMR_AF=0.61;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4776;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 47168898 rs180414 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 47173662 rs180426 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.35;AMR_AF=0.63;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.6046;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 47178307 rs180430 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.36;AMR_AF=0.63;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.77;LDAF=0.5853;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 48081637 rs7136561 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2585;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48104746 rs1235152 G C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.66;AMR_AF=0.79;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7907;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48110325 rs1235153 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9963;ERATE=0.0029;EUR_AF=0.95;LDAF=0.9794;RSQ=0.9297;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 48132451 rs2072116 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.90;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8935;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 48134016 rs78244793 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0306;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48134214 rs10875687 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2379;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48134634 rs11168219 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2405;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48134695 rs2074533 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.52;AMR_AF=0.48;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5092;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 48143360 rs757280 T C 100 PASS AA=N;AC=2;AF=0.82;AFR_AF=0.73;AMR_AF=0.89;AN=2;ASN_AF=0.93;AVGPOST=0.9792;ERATE=0.0081;EUR_AF=0.77;LDAF=0.8149;RSQ=0.9535;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +12 48144243 rs757279 A C 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8296;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.68,-0.00 +12 48144925 rs2016123 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.93;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.9687;ERATE=0.0218;EUR_AF=0.98;LDAF=0.9604;RSQ=0.6951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.800:-5.00,-1.19,-0.03 +12 48145153 rs757287 G A 100 PASS AA=g;AC=1;AF=0.38;AFR_AF=0.41;AMR_AF=0.52;AN=2;ASN_AF=0.39;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3760;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48145171 rs757286 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.41;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3752;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48151822 rs11168230 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2812;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.40 +12 48181778 rs6580637 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=0.9975;ERATE=0.0065;EUR_AF=0.72;LDAF=0.8158;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 48238757 rs731236 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.27;AMR_AF=0.28;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0012;EUR_AF=0.40;LDAF=0.2641;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48238837 rs7975232 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.67;AMR_AF=0.47;AN=2;ASN_AF=0.29;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4962;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48359984 rs2286025 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.01;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1938;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48367829 rs1635560 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2058;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48367976 rs2070739 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1957;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48375568 rs1635553 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.47;AMR_AF=0.38;AN=2;ASN_AF=0.57;AVGPOST=0.9983;ERATE=0.0011;EUR_AF=0.46;LDAF=0.4796;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.65,-0.11 +12 48375965 rs2276457 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.40;AMR_AF=0.35;AN=2;ASN_AF=0.57;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4290;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48375975 rs2276456 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.47;AMR_AF=0.36;AN=2;ASN_AF=0.58;AVGPOST=0.9993;ERATE=0.0019;EUR_AF=0.38;LDAF=0.4491;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48376291 rs2276454 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.33;AMR_AF=0.36;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4222;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48377970 rs1635550 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.61;AMR_AF=0.64;AN=2;ASN_AF=0.61;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.83;LDAF=0.6941;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48380682 rs10875714 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2093;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48381045 rs41317915 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48389643 rs1034762 A C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.78;AMR_AF=0.62;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.85;LDAF=0.7006;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48391416 rs3737548 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2162;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48398002 rs3803184 G C 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.66;AMR_AF=0.63;AN=2;ASN_AF=0.58;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.84;LDAF=0.6962;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.900:-0.07,-0.84,-5.00 +12 48398080 rs3803183 T A 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.66;AMR_AF=0.63;AN=2;ASN_AF=0.57;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.84;LDAF=0.6941;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.900:-0.01,-1.67,-5.00 +12 48459488 rs17122612 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.27;AMR_AF=0.45;AN=2;ASN_AF=0.57;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.16;LDAF=0.3385;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.58 +12 48465425 rs72644844 A C 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.27;AMR_AF=0.45;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.16;LDAF=0.3386;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48477422 rs886588 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1804;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48526712 rs2228500 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1696;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48527059 rs2269933 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.27;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2560;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48537624 rs4075913 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.73;AMR_AF=0.56;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.84;LDAF=0.6541;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48538979 rs11168427 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1701;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48578325 rs10783231 A C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.60;AMR_AF=0.54;AN=2;ASN_AF=0.40;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.79;LDAF=0.6051;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +12 48596241 rs11168459 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2167;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48597053 rs17122812 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48723142 rs117292373 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0146;RSQ=0.9578;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.150:-5.00,-1.63,-0.01 +12 48723595 rs1471997 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1846;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48866585 rs7956679 A C 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.2779;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48866792 rs7966826 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.2779;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48877056 rs7972785 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.47;LDAF=0.2781;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48877193 rs11832311 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.09;LDAF=0.2775;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 48879951 rs11168599 T G 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48888594 rs11458 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2715;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48888689 rs9268 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.15;AMR_AF=0.40;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0021;EUR_AF=0.65;LDAF=0.3824;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48888763 rs2705132 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.64;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9130;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 48919556 rs2731073 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.89;LDAF=0.9273;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 48919659 rs4075258 T C 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.46;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9951;ERATE=0.0019;EUR_AF=0.44;LDAF=0.5407;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 48919660 rs35367885 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=0.9941;ERATE=0.0077;EUR_AF=0.34;LDAF=0.2057;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 48919796 rs12425460 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.48;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5929;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 48920006 rs12425518 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.36;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.3158;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 49048738 rs3741628 G T 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.34;AMR_AF=0.56;AN=2;ASN_AF=0.75;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.56;LDAF=0.5579;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49086963 rs3741632 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.45;AMR_AF=0.57;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5973;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49110248 rs1110432 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.33;AMR_AF=0.56;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5575;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49176805 rs115315671 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0113;RSQ=0.9785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49176872 rs3730308 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.28;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.15;LDAF=0.1336;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49212806 rs12369114 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0934;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.50,-0.16 +12 49218171 rs2070615 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.89;AMR_AF=0.64;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6185;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49255798 rs1565933 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.30;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4228;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 49308284 rs10747556 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49312432 rs10783294 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.40;LDAF=0.3555;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49312593 rs10875893 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3547;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49314862 rs10875894 C A 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3556;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49314994 rs4760600 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3551;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49319036 rs12829682 A C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.65;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9073;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +12 49333799 rs2228417 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0353;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 49334762 rs12122 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.75;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9301;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 49359989 rs1051886 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.45;AN=2;ASN_AF=0.47;AVGPOST=0.9990;ERATE=0.0016;EUR_AF=0.40;LDAF=0.3600;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 49439659 rs833818 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9768;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 49495321 rs35541634 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.06;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0308;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 49666509 rs7974831 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.80;AMR_AF=0.38;AN=2;ASN_AF=0.79;AVGPOST=0.9380;ERATE=0.0388;EUR_AF=0.31;LDAF=0.5528;RSQ=0.9257;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.47,-0.01,-3.62 +12 50151977 rs2720305 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.04;AMR_AF=0.45;AN=2;ASN_AF=0.77;AVGPOST=0.9985;ERATE=0.0007;EUR_AF=0.31;LDAF=0.3909;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50189602 rs3813526 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.56;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.05;LDAF=0.2772;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-0.06,-0.90,-5.00 +12 50189807 rs2720298 C A 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.75;AMR_AF=0.57;AN=2;ASN_AF=0.68;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5702;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50189834 rs2603104 T G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.82;AMR_AF=0.59;AN=2;ASN_AF=0.81;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.39;LDAF=0.6298;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50190653 rs3741555 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.24;AMR_AF=0.35;AN=2;ASN_AF=0.56;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2753;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50190667 rs3741554 A T 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=0.9963;ERATE=0.0004;EUR_AF=0.05;LDAF=0.2234;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50232169 rs11169172 A T 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.24;AMR_AF=0.36;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2733;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50236848 rs143608766 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0118;RSQ=0.9625;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50291735 rs297937 G C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.69;AMR_AF=0.51;AN=2;ASN_AF=0.74;AVGPOST=0.9963;ERATE=0.0013;EUR_AF=0.54;LDAF=0.6211;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50348078 rs426496 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.48;AMR_AF=0.81;AN=2;ASN_AF=0.65;AVGPOST=0.9971;ERATE=0.0020;EUR_AF=0.80;LDAF=0.6888;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 50349143 rs403201 C G 100 PASS AA=a;AC=2;AF=0.69;AFR_AF=0.48;AMR_AF=0.81;AN=2;ASN_AF=0.65;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.80;LDAF=0.6905;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +12 50349411 rs457487 C A 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.27;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.72;LDAF=0.5099;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +12 50386015 rs296737 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.24;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7536;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 50393372 rs378943 G T 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.24;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7537;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 50452708 rs653576 C G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.90;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.98;LDAF=0.9243;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 50473660 rs404751 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.90;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9237;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 50503269 rs836180 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.10;AVGPOST=0.9951;ERATE=0.0064;EUR_AF=0.41;LDAF=0.2548;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 50537815 rs7302981 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.92;AMR_AF=0.70;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7687;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 50824275 rs77680811 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.2217;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 51089616 rs2684891 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.71;AMR_AF=0.81;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.7994;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51112586 rs3803181 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1499;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 51135167 rs1975351 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9580;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51135275 rs1866422 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9634;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51236931 rs829121 G A 100 PASS AA=g;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9763;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.60,-0.01 +12 51237816 rs861204 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2026;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51382232 rs161044 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.77;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9145;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51399050 rs224589 T G 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.62;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7564;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51442944 rs12379 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.48;AMR_AF=0.49;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5539;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51461425 rs4768956 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51461793 rs2029146 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.21;AMR_AF=0.44;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0015;EUR_AF=0.54;LDAF=0.3340;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 51467596 rs11169696 A C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.68;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8240;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51504799 rs7978782 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9424;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51510234 rs12826153 C A 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1690;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51585335 rs10783419 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.27;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3511;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51636259 rs1049467 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.73;AMR_AF=0.81;AN=2;ASN_AF=0.89;AVGPOST=0.9777;ERATE=0.0314;EUR_AF=0.69;LDAF=0.7676;RSQ=0.9641;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51681846 rs4611251 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.63;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8409;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51681903 rs7954976 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.63;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51685831 rs3210837 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.60;AMR_AF=0.83;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7888;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51693357 rs2288368 G A 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.54;AMR_AF=0.54;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51722311 rs7138439 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.53;AMR_AF=0.59;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 51735022 rs934089 A T 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.38;AMR_AF=0.48;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4949;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 51737520 rs17860301 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1508;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51737562 rs17860300 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1508;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51740388 rs79953319 C A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.72;AMR_AF=0.76;AN=2;ASN_AF=0.71;AVGPOST=0.9714;ERATE=0.0732;EUR_AF=0.87;LDAF=0.7791;RSQ=0.9651;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 51748326 rs2288369 G A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.67;AMR_AF=0.63;AN=2;ASN_AF=0.28;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.72;LDAF=0.5762;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +12 51752897 rs907347 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.57;AMR_AF=0.44;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4501;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51771161 rs201588286 T C 100 PASS AA=T;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.0026;LDAF=0.0014;RSQ=0.9693;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51846090 rs1995691 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4979;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51851126 rs4512904 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4977;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 51890721 rs10783448 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52080965 rs4761829 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.65;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8551;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52099153 rs2291265 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.58;AMR_AF=0.86;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8010;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52156255 rs303767 A C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.83;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.89;LDAF=0.9012;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52163789 rs303808 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.52;AMR_AF=0.86;AN=2;ASN_AF=0.86;AVGPOST=0.9977;ERATE=0.0006;EUR_AF=0.83;LDAF=0.7762;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +12 52184271 rs303815 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.34;AMR_AF=0.72;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5887;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52200028 rs303828 C A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.83;AMR_AF=0.89;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8917;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52200742 rs60637 C A 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.29;AMR_AF=0.71;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5723;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52282060 rs697634 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.45;AVGPOST=0.9946;ERATE=0.0099;EUR_AF=0.31;LDAF=0.3288;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52283302 rs4762026 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1865;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52312944 rs706815 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.49;AMR_AF=0.25;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3368;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52369300 rs2242106 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.20;AMR_AF=0.52;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2980;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52400887 rs141044558 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0035;AVGPOST=0.9830;ERATE=0.0015;EUR_AF=0.02;LDAF=0.0168;RSQ=0.6199;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.050:-3.05,-0.47,-0.18 +12 52404618 rs1298913 T G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.88;AMR_AF=0.48;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7029;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52565322 rs3741737 G T 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.67;AMR_AF=0.83;AN=2;ASN_AF=0.88;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8073;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52574780 rs4762060 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.68;AVGPOST=0.9970;ERATE=0.0029;EUR_AF=0.69;LDAF=0.7276;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52627215 rs7308888 A G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.91;AVGPOST=0.9979;ERATE=0.0008;EUR_AF=0.83;LDAF=0.8771;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-1.04,-0.04 +12 52631313 rs6580870 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.91;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8606;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52635241 rs2078201 G A 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.23;AVGPOST=0.9751;ERATE=0.0146;EUR_AF=0.26;LDAF=0.2429;RSQ=0.9573;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52635443 rs2243588 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.87;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8501;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52639302 rs2608009 G C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8728;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52680008 rs3657 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.50;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3920;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +12 52681416 rs7300801 T C 100 PASS AA=t;AC=1;AF=0.36;AFR_AF=0.48;AMR_AF=0.35;AN=2;ASN_AF=0.15;AVGPOST=0.9844;ERATE=0.0098;EUR_AF=0.44;LDAF=0.3588;RSQ=0.9788;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.10,-0.04,-5.00 +12 52681437 rs3187034 A G 100 PASS AA=a;AC=1;AF=0.33;AFR_AF=0.43;AMR_AF=0.33;AN=2;ASN_AF=0.14;AVGPOST=0.9841;ERATE=0.0271;EUR_AF=0.41;LDAF=0.3290;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.85,-0.00,-5.00 +12 52681533 rs7300941 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.59;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4117;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.28 +12 52681733 rs7954186 A C 100 PASS AA=a;AC=1;AF=0.43;AFR_AF=0.67;AMR_AF=0.39;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.51;LDAF=0.4330;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-2.72,-0.00,-5.00 +12 52681925 rs6580873 A C 100 PASS AA=a;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9204;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.10,-0.04 +12 52681968 rs6580874 T C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9913;ERATE=0.0011;EUR_AF=0.97;LDAF=0.9831;RSQ=0.8156;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.91,-0.06 +12 52682141 rs12812669 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9990;ERATE=0.0007;EUR_AF=0.26;LDAF=0.1774;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52699548 rs2032360 T C 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.48;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=0.9851;ERATE=0.0305;EUR_AF=0.25;LDAF=0.3601;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +12 52708420 rs2857671 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.95;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7183;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +12 52708565 rs2857670 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.88;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7032;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.90,-0.00 +12 52711450 rs2248619 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.90;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7070;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52712975 rs3741715 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.36;AMR_AF=0.36;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3702;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52758994 rs2298795 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2108;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52774235 rs951773 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52777502 rs1945297 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.60;AMR_AF=0.44;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4918;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52789509 rs1732264 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8044;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52789597 rs1732265 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52789605 rs1732266 T A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52818504 rs298104 T G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.67;AMR_AF=0.72;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52821992 rs664354 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.71;AMR_AF=0.69;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6823;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52822258 rs401926 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 52824302 rs423949 C A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6714;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52824352 rs395623 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3259;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52825363 rs1798640 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6714;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52827608 rs2232387 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1341;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52827786 rs2232385 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.25;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1431;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52827818 rs298109 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6714;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52841765 rs388626 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.49;AMR_AF=0.56;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5777;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52842736 rs437014 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.69;AVGPOST=0.9843;ERATE=0.0222;EUR_AF=0.41;LDAF=0.4873;RSQ=0.9804;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52843666 rs673602 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.50;AMR_AF=0.63;AN=2;ASN_AF=0.72;AVGPOST=0.9601;ERATE=0.0185;EUR_AF=0.54;LDAF=0.5909;RSQ=0.9469;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.67,-0.11 +12 52844265 rs652423 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.30;AN=2;ASN_AF=0.42;AVGPOST=0.9952;ERATE=0.0076;EUR_AF=0.30;LDAF=0.3533;RSQ=0.9876;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52845298 rs61914498 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.37;AVGPOST=0.9472;ERATE=0.0079;EUR_AF=0.27;LDAF=0.2331;RSQ=0.8503;SNPSOURCE=EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-1.73,-0.01,-4.00 +12 52845574 rs144860693 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.15;AVGPOST=0.9554;ERATE=0.0066;EUR_AF=0.21;LDAF=0.1931;RSQ=0.8824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-0.48,-0.48,-0.48 +12 52845801 rs428894 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.49;AMR_AF=0.64;AN=2;ASN_AF=0.72;AVGPOST=0.9123;ERATE=0.0407;EUR_AF=0.58;LDAF=0.5931;RSQ=0.8468;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +12 52863038 rs410562 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.56;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3327;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.24,-0.38,-4.70 +12 52863091 rs35481773 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2285;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.80 +12 52863160 rs34838670 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2285;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.09,-0.00,-5.00 +12 52863213 rs412533 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3347;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.87 +12 52863564 rs3894847 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2284;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52863621 rs382367 T G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.23;AMR_AF=0.60;AN=2;ASN_AF=0.70;AVGPOST=0.9835;ERATE=0.0109;EUR_AF=0.55;LDAF=0.5235;RSQ=0.9809;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52863709 rs452600 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3343;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52864240 rs415580 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3341;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52865443 rs7487256 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.39;AMR_AF=0.35;AN=2;ASN_AF=0.20;AVGPOST=0.9919;ERATE=0.0006;EUR_AF=0.25;LDAF=0.2861;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.96,-0.01,-2.09 +12 52865548 rs28759265 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.56;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3332;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0155;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.46 +12 52865837 rs10876294 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.36;AN=2;ASN_AF=0.27;AVGPOST=0.9490;ERATE=0.0012;EUR_AF=0.25;LDAF=0.2915;RSQ=0.9210;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.94,-0.01,-1.69 +12 52867260 rs149028472 C T 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.31;AN=2;ASN_AF=0.55;AVGPOST=0.9761;ERATE=0.0013;EUR_AF=0.36;LDAF=0.3262;RSQ=0.9636;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +12 52867324 rs28542082 G T 100 PASS AA=a;AC=1;AF=0.33;AFR_AF=0.05;AMR_AF=0.31;AN=2;ASN_AF=0.56;AVGPOST=0.9684;ERATE=0.0020;EUR_AF=0.35;LDAF=0.3285;RSQ=0.9525;SNPSOURCE=EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +12 52867375 rs74093594 A G 100 PASS AA=N;AC=1;AF=0.31;AFR_AF=0.54;AMR_AF=0.35;AN=2;ASN_AF=0.20;AVGPOST=0.9686;ERATE=0.0016;EUR_AF=0.22;LDAF=0.3087;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-1.94,-0.01,-3.24 +12 52882094 rs12581781 T G 100 PASS AA=N;AC=1;AF=0.32;AFR_AF=0.52;AMR_AF=0.36;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3158;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.02,-1.38 +12 52883888 rs4761912 C T 100 PASS AA=t;AC=1;AF=0.32;AFR_AF=0.52;AMR_AF=0.36;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3159;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.94 +12 52884557 rs298120 T C 100 PASS AA=N;AC=2;AF=0.67;AFR_AF=0.63;AMR_AF=0.68;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6668;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.83,-0.07 +12 52884735 rs12578949 A G 100 PASS AA=N;AC=1;AF=0.30;AFR_AF=0.45;AMR_AF=0.36;AN=2;ASN_AF=0.21;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.25;LDAF=0.2995;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.97 +12 52885316 rs201142403 A G 100 PASS AA=a;AC=1;AF=0.12;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.39;AVGPOST=0.9989;ERATE=0.0003;LDAF=0.1181;RSQ=0.9960;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52885350 rs199531479 T C 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.31;AVGPOST=0.9994;ERATE=0.0005;LDAF=0.0935;RSQ=0.9970;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52886396 rs4761914 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0194;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.100:-5.00,-1.79,-0.01 +12 52886478 rs376545 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.35;AMR_AF=0.33;AN=2;ASN_AF=0.57;AVGPOST=0.9920;ERATE=0.0082;EUR_AF=0.32;LDAF=0.3941;RSQ=0.9894;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52886490 rs711317 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.14;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5263;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +12 52886911 rs17845411 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.42;AMR_AF=0.36;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2925;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.25,-0.01,-1.65 +12 52908872 rs11549949 C T 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1330;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +12 52908917 rs11549950 T C 100 PASS AA=c;AC=1;AF=0.15;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1463;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.82 +12 52909061 rs28694819 T A 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1330;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52910687 rs1799849 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1321;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52910851 rs60815939 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1321;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52911401 rs4761924 T G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1322;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52912768 rs1132948 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1316;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52912870 rs17852231 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.16;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1306;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52912906 rs641621 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=0.9868;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2516;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52912909 rs641615 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=0.9887;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2539;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52912959 rs60314569 G A 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.23;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1380;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52913730 rs11549951 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.08;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0010;EUR_AF=0.07;LDAF=0.0611;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52938320 rs2292506 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.24;AMR_AF=0.15;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1635;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52938364 rs2292507 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.05;AMR_AF=0.49;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3907;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52938497 rs10783518 A C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.05;AMR_AF=0.50;AN=2;ASN_AF=0.47;AVGPOST=0.9951;ERATE=0.0043;EUR_AF=0.51;LDAF=0.3940;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.79,-0.08,-5.00 +12 52938535 rs10783519 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.08;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9849;ERATE=0.0139;EUR_AF=0.52;LDAF=0.4147;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52942627 rs3803084 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0016;EUR_AF=0.01;LDAF=0.1495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52943144 rs4761930 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.05;AMR_AF=0.49;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3898;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 52944060 rs10747643 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.36;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6207;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52964417 rs657102 A G 100 PASS AA=a;AC=1;AF=0.78;AFR_AF=0.96;AMR_AF=0.69;AN=2;ASN_AF=0.71;AVGPOST=0.9891;ERATE=0.0112;EUR_AF=0.76;LDAF=0.7769;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52965173 rs670741 T G 100 PASS AA=g;AC=1;AF=0.78;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7792;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52965722 rs673363 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52965761 rs673449 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52965782 rs673476 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.97;AMR_AF=0.69;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7783;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52981442 rs11170183 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1536;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52984620 rs12818575 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1536;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52985293 rs12824366 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3588;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52986132 rs617820 T A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.98;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8788;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 52986187 rs12833456 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3588;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52992812 rs11170187 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3584;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 52992919 rs7308017 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0672;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53003082 rs3847848 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.21;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0960;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53004654 rs595624 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.34;LDAF=0.2405;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53008372 rs653493 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0887;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53009041 rs666760 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0032;EUR_AF=0.01;LDAF=0.0913;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53045777 rs11835758 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.03;AVGPOST=0.9959;ERATE=0.0214;EUR_AF=0.44;LDAF=0.2741;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53069014 rs14024 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3287;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53070121 rs698170 T G 100 PASS AA=N;AC=2;AF=0.80;AFR_AF=0.78;AMR_AF=0.73;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8002;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53070145 rs936958 G A 100 PASS AA=N;AC=1;AF=0.39;AFR_AF=0.50;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3948;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53071560 rs2741158 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.50;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3948;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53084928 rs11170236 T G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.12;AN=2;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1039;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53085262 rs2684339 C A 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.31;AMR_AF=0.31;AN=2;ASN_AF=0.61;AVGPOST=0.9955;ERATE=0.0033;EUR_AF=0.38;LDAF=0.4126;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53086645 rs3782489 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.43;AMR_AF=0.33;AN=2;ASN_AF=0.22;AVGPOST=0.9984;ERATE=0.0015;EUR_AF=0.36;LDAF=0.3342;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53088484 rs10783528 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3670;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53090190 rs7138818 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.46;AMR_AF=0.38;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3676;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53091566 rs1567759 C A 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.46;AMR_AF=0.38;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3664;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53096913 rs1625862 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9801;RSQ=0.9771;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 53164848 rs7313832 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4602;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53165940 rs6580904 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.43;AMR_AF=0.68;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6540;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53186088 rs3887954 G C 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.36;AMR_AF=0.51;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4352;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53186122 rs4432093 G A 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8377;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53201413 rs931479 T C 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.77;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8468;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53204614 rs2307027 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.80;AMR_AF=0.85;AN=2;ASN_AF=0.87;AVGPOST=0.9980;ERATE=0.0060;EUR_AF=0.85;LDAF=0.8436;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53216184 rs4415849 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +12 53217056 rs10876353 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.28;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4748;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53217701 rs10876354 C A 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.28;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4749;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53227803 rs2638497 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.82;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9916;ERATE=0.0110;EUR_AF=0.59;LDAF=0.6960;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53242440 rs2013335 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.53;AVGPOST=0.9984;ERATE=0.0008;EUR_AF=0.57;LDAF=0.4973;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53242613 rs199880767 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0007;RSQ=0.7012;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53294381 rs8608 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5415;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53298775 rs137898974 A T 100 PASS AA=a;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0628;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53416251 rs10506315 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.49;AMR_AF=0.90;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7862;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53432107 rs55927246 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1461;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53433089 rs1548204 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9889;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.89,-0.00 +12 53433486 rs8916 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.49;AMR_AF=0.90;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7865;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53580131 rs3814778 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.59;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=0.9947;ERATE=0.0015;EUR_AF=0.09;LDAF=0.2132;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53587468 rs2272300 T G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.55;AMR_AF=0.10;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2157;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53591647 rs7972747 T A 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0084;RSQ=0.8070;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.40 +12 53662624 rs6580942 C A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.8336;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53670545 rs1318648 C A 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.41;AMR_AF=0.61;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6202;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 53671250 rs17125267 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0114;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53671790 rs17125271 G A 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0114;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 53677072 rs1609473 T G 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9634;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53677089 rs4454760 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9634;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53681883 rs1110719 A T 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.58;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8977;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53682326 rs1110720 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.81;AVGPOST=0.9986;ERATE=0.0038;EUR_AF=0.62;LDAF=0.6307;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53682986 rs3214023 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.35;AMR_AF=0.57;AN=2;ASN_AF=0.40;AVGPOST=0.9980;ERATE=0.0011;EUR_AF=0.62;LDAF=0.4931;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53686703 rs1056685 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9698;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53691962 rs2694861 C A 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.70;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9214;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53693532 rs1534284 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9817;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9355;RSQ=0.9034;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.62,-0.00 +12 53693533 rs1534283 A C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9815;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9352;RSQ=0.9013;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +12 53700848 rs1534282 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9694;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53700860 rs711316 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9487;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53703021 rs1546808 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.69;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9253;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53714496 rs4759231 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9332;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53714509 rs7298879 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9333;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53722098 rs7138938 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9667;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 53722128 rs7139272 G A 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.68;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9168;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 54069803 rs916134 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.33;AMR_AF=0.33;AN=2;ASN_AF=0.43;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3420;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-1.00,-0.05,-5.00 +12 54069925 rs17101603 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0183;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 54110197 rs2277369 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1060;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 54339052 rs4759058 C A 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.25;AMR_AF=0.70;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.71;LDAF=0.6358;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 54349365 rs10876524 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.55;AMR_AF=0.85;AN=2;ASN_AF=0.82;AVGPOST=0.9765;ERATE=0.0021;EUR_AF=0.85;LDAF=0.7749;RSQ=0.9504;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.950:-3.66,-0.51,-0.16 +12 54367061 rs4759315 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0016;EUR_AF=1.00;LDAF=0.9977;RSQ=0.4678;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 54394497 rs2241820 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.50;AMR_AF=0.55;AN=2;ASN_AF=0.77;AVGPOST=0.9924;ERATE=0.0018;EUR_AF=0.60;LDAF=0.6150;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +12 54405190 rs4142680 C T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.9827;ERATE=0.0485;EUR_AF=0.44;LDAF=0.4770;RSQ=0.9632;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 54651471 rs1140681 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.39;LDAF=0.5530;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 54767812 rs2887875 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.32;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2107;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 54796757 rs7306692 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.19;AN=2;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1437;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 54799450 rs1249378 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 54805753 rs1922254 G T 100 PASS AA=g;AC=2;AF=0.90;AFR_AF=0.82;AMR_AF=0.87;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8966;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 54805765 rs1249181 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.74;AMR_AF=0.86;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8779;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 54905815 rs2458409 C G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.67;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8135;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 54911426 rs2270581 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0726;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 54911768 rs1795838 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5473;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 54932788 rs4758966 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.82;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9058;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 54970454 rs1249950 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.52;AMR_AF=0.50;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4712;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 54974803 rs8407 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.07;AVGPOST=0.9979;ERATE=0.0013;EUR_AF=0.30;LDAF=0.1755;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 54975837 rs1249958 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9793;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 55042118 rs78394705 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.08;LDAF=0.0558;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 55248357 rs1048371 G T 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.30;AMR_AF=0.57;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5375;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 55250612 rs1349910 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9593;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 55250714 rs10876639 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.15;AMR_AF=0.52;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0021;EUR_AF=0.41;LDAF=0.4485;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 55421250 rs2656804 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.53;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3903;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 55688267 rs7308594 G A 100 PASS AA=-;AC=1;AF=0.82;AFR_AF=0.94;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.8149;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 55688895 rs78183586 A G 100 PASS AA=-;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0040;LDAF=0.0256;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 55759878 rs10876751 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.13;AMR_AF=0.66;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.64;LDAF=0.4725;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 55794264 rs7967395 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.48;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.84;LDAF=0.7847;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +12 55794976 rs7971073 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.48;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.84;LDAF=0.7847;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 55945119 rs7313899 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56030938 rs10876838 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3199;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56031273 rs7970885 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.42;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3218;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56079084 rs3852533 C G 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.31;AMR_AF=0.58;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5848;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 56082785 rs3782240 C G 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.30;AMR_AF=0.58;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5822;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 56088206 rs7953669 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.66;AMR_AF=0.64;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6741;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56088773 rs2293410 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.30;AMR_AF=0.57;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5818;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56089357 rs1800974 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.58;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5877;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56090038 rs7974721 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.35;AMR_AF=0.58;AN=2;ASN_AF=0.92;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5922;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +12 56091617 rs2293412 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6749;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56093817 rs11171660 T G 100 PASS AA=g;AC=2;AF=0.77;AFR_AF=0.95;AMR_AF=0.69;AN=2;ASN_AF=0.93;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7698;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56096816 rs2293413 T C 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.38;AMR_AF=0.59;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5995;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56122084 rs3138131 G C 100 PASS AA=G;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0041;RSQ=0.9407;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 56151291 rs7068 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.32;LDAF=0.2642;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56236531 rs7294345 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +12 56295734 rs7302270 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9684;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56335107 rs1136082 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.76;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8346;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56348028 rs1052206 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.53;AMR_AF=0.72;AN=2;ASN_AF=0.80;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7270;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56398454 rs773115 G C 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.28;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7934;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56428344 rs2452822 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.74;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9364;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56435929 rs1131017 C G 100 PASS AA=c;AC=2;AF=0.55;AFR_AF=0.18;AMR_AF=0.65;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5497;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56477694 rs2271194 A T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.32;AMR_AF=0.67;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5804;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56493677 rs56259600 A G 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9525;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 56493822 rs2292238 A C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3523;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56494991 rs2271189 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3172;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56531012 rs138187966 T G 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +12 56575742 rs773644 T G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9501;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56625045 rs1274497 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9924;RSQ=0.9342;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56647911 rs808919 G C 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.45;AMR_AF=0.89;AN=2;ASN_AF=0.96;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8204;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56649601 rs1274490 A G 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.45;AMR_AF=0.89;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8225;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56717594 rs144721765 G A 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0020;EUR_AF=0.0040;LDAF=0.0021;RSQ=0.9156;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 56722060 rs1918496 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.44;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8643;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56743044 rs2066815 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0110;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56814653 rs2291739 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.32;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0014;EUR_AF=0.56;LDAF=0.4179;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56815281 rs2291738 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.13;AMR_AF=0.35;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3441;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56815922 rs774047 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.21;AMR_AF=0.60;AN=2;ASN_AF=0.70;AVGPOST=0.9975;ERATE=0.0021;EUR_AF=0.45;LDAF=0.4838;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56821998 rs774026 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.21;AMR_AF=0.60;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4876;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56822378 rs774027 T A 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.23;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4945;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56822641 rs774028 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9671;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56825311 rs774033 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.23;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4932;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 56827694 rs2279665 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.65;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=0.9970;ERATE=0.0026;EUR_AF=0.55;LDAF=0.4752;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 56827974 rs2638312 C T 100 PASS AA=c;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9690;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56845296 rs2643622 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9519;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56862886 rs2657881 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9890;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56915782 rs808929 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.95;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9614;ERATE=0.0109;EUR_AF=0.97;LDAF=0.9631;RSQ=0.6186;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56956213 rs3759091 T C 100 PASS AA=t;AC=2;AF=0.72;AFR_AF=0.38;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7212;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 56992630 rs2242497 C G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.70;AMR_AF=0.31;AN=2;ASN_AF=0.22;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3913;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +12 56994170 rs1527140 C T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.40;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1052;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57006998 rs7974600 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.21;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0585;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57007933 rs12314491 A C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.40;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57106660 rs4788 A T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.84;AMR_AF=0.78;AN=2;ASN_AF=0.75;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7665;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57106810 rs898609 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.35;AMR_AF=0.69;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6005;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57108203 rs4902 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.35;AMR_AF=0.69;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6005;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57109792 rs2958149 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.90;AMR_AF=0.78;AN=2;ASN_AF=0.76;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7832;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57109931 rs2926747 A T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.50;AMR_AF=0.70;AN=2;ASN_AF=0.74;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6367;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57110442 rs76076193 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0119;RSQ=0.9662;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57112637 rs11171951 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.35;AMR_AF=0.68;AN=2;ASN_AF=0.75;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5985;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57114100 rs2926743 A G 100 PASS AA=N;AC=2;AF=0.78;AFR_AF=0.90;AMR_AF=0.78;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7820;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57114307 rs2958127 A T 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.35;AMR_AF=0.69;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6006;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57114842 rs148087516 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0011;RSQ=0.8780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57114869 rs17118953 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.21;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0651;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57133140 rs1131514 T G 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.35;AMR_AF=0.69;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6005;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57137828 rs1026565 T A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.50;AMR_AF=0.70;AN=2;ASN_AF=0.75;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6371;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57390038 rs35493121 T C 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1316;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57422934 rs17119344 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1152;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57423197 rs56128678 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1230;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57433051 rs4759043 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0256;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57442139 rs2270737 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1230;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57493602 rs35182390 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0082;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57499408 rs55843453 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0269;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.74 +12 57567180 rs1800177 G T 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4068;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57567762 rs1800194 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4068;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57569513 rs1800180 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.51;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0031;EUR_AF=0.32;LDAF=0.3992;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57579727 rs1800182 A T 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.52;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4070;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.34,-0.00,-5.00 +12 57581028 rs6581127 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9798;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +12 57585144 rs1800139 C T 100 PASS AA=c;AC=1;AF=0.54;AFR_AF=0.31;AMR_AF=0.57;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5444;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57587839 rs1800187 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.30;AMR_AF=0.57;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.68;LDAF=0.5424;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +12 57589659 rs1800154 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.53;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4087;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57589784 rs7397167 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9907;ERATE=0.0071;EUR_AF=0.99;LDAF=0.9829;RSQ=0.7913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57589865 rs1800189 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.20;AMR_AF=0.57;AN=2;ASN_AF=0.56;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.68;LDAF=0.5190;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57590735 rs7308552 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +12 57590758 rs1800191 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.51;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.32;LDAF=0.4149;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57590797 rs1800156 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.53;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.32;LDAF=0.4085;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57590869 rs7308698 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57591458 rs1800166 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.32;LDAF=0.4096;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57593101 rs1140648 G A 100 PASS AA=g;AC=1;AF=0.54;AFR_AF=0.29;AMR_AF=0.57;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0025;EUR_AF=0.68;LDAF=0.5412;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57605168 rs10783814 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57606386 rs7304504 A G 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9211;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.74,-0.01 +12 57618619 rs61736007 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.06;AMR_AF=0.31;AN=2;ASN_AF=0.14;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1900;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57619209 rs7979061 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9864;ERATE=0.0043;EUR_AF=0.99;LDAF=0.9681;RSQ=0.8209;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +12 57619362 rs10783816 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.40;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3628;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57637593 rs3204635 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2079;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57649840 rs4075325 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.21;AMR_AF=0.52;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.41;LDAF=0.3931;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57843014 rs776037 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.48;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8624;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57843711 rs2229357 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1513;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57858414 rs3817475 A G 100 PASS AA=a;AC=1;AF=0.42;AFR_AF=0.19;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4188;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57859431 rs2228225 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.19;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4181;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57865321 rs2228224 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.19;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4181;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57865821 rs2228226 G C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.81;AMR_AF=0.51;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5970;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57869241 rs527226 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9934;RSQ=0.9672;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.86,-0.06 +12 57869447 rs2277318 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.73;AMR_AF=0.51;AN=2;ASN_AF=0.38;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5783;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57869582 rs2277315 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.81;AMR_AF=0.51;AN=2;ASN_AF=0.38;AVGPOST=0.9928;ERATE=0.0008;EUR_AF=0.66;LDAF=0.5947;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57870121 rs486699 A C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=0.86;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8689;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57870155 rs11544238 A C 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.35;AVGPOST=0.9981;ERATE=0.0015;EUR_AF=0.62;LDAF=0.4162;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57870648 rs512490 A G 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.67;AMR_AF=0.82;AN=2;ASN_AF=0.88;AVGPOST=0.9980;ERATE=0.0077;EUR_AF=0.96;LDAF=0.8502;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 57883801 rs899653 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.21;AMR_AF=0.80;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.83;LDAF=0.6581;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57905687 rs1284467 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57958313 rs775322 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.43;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5205;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57985204 rs11537654 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.04;AMR_AF=0.35;AN=2;ASN_AF=0.58;AVGPOST=0.9947;ERATE=0.0007;EUR_AF=0.28;LDAF=0.3166;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 57994743 rs775235 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 57995089 rs812873 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.70;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9283;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 58009372 rs2277323 G A 100 PASS AA=g;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.23;LDAF=0.1828;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 58010163 rs1564374 A G 100 PASS AA=N;AC=1;AF=0.64;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6399;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 58015494 rs923828 G A 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.21;AVGPOST=0.9949;ERATE=0.0033;EUR_AF=0.41;LDAF=0.2921;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.10 +12 58019030 rs142921915 G A 100 PASS AA=.;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0004;LDAF=0.0015;RSQ=0.9319;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 58019472 rs774895 T G 100 PASS AA=.;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9677;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 58022074 rs12322482 G A 100 PASS AA=.;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.25;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1906;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 58023981 rs715930 C A 100 PASS AA=.;AC=1;AF=0.22;AFR_AF=0.29;AMR_AF=0.26;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2203;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 58025813 rs774896 G C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2474;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.81,-0.27,-0.34 +12 58112189 rs799265 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3473;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 58125438 rs12307841 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1138;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 58126234 rs17852479 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.08;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.43;LDAF=0.2450;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 58127766 rs238526 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 58127967 rs12422249 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1138;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 58135659 rs238530 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 58145156 rs2270777 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2691;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 58204283 rs2172521 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 58335626 rs3751325 A T 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.66;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3616;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 58350631 rs10122 C T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.53;AMR_AF=0.51;AN=2;ASN_AF=0.76;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.36;LDAF=0.5283;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0158;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 59279660 rs11172796 A T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.31;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=0.9960;ERATE=0.0187;EUR_AF=0.08;LDAF=0.1508;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 59284551 rs11172799 G T 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.29;AMR_AF=0.02;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0800;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 59308003 rs63602161 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1395;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 62861111 rs6581450 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 62946739 rs147472788 A C 100 PASS AA=A;AC=1;AF=0.0041;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0041;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 63544209 rs1042615 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.85;AMR_AF=0.66;AN=2;ASN_AF=0.51;AVGPOST=0.9934;ERATE=0.0018;EUR_AF=0.54;LDAF=0.6212;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 63954304 rs1054891 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.69;AMR_AF=0.44;AN=2;ASN_AF=0.31;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4545;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.22,-0.40,-5.00 +12 63974439 rs61935050 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9912;ERATE=0.0020;EUR_AF=0.20;LDAF=0.1142;RSQ=0.9726;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.10 +12 64011062 rs4105524 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.45;AVGPOST=0.9952;ERATE=0.0010;EUR_AF=0.41;LDAF=0.4112;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.86,-0.06 +12 64017956 rs7300764 A T 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1141;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.32 +12 64062023 rs10878073 A C 100 PASS AA=a;AC=1;AF=0.34;AFR_AF=0.37;AMR_AF=0.27;AN=2;ASN_AF=0.57;AVGPOST=0.9920;ERATE=0.0005;EUR_AF=0.19;LDAF=0.3418;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 64062052 rs10878074 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.38;AMR_AF=0.27;AN=2;ASN_AF=0.58;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3503;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +12 64062065 rs10878075 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.38;AMR_AF=0.27;AN=2;ASN_AF=0.58;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.20;LDAF=0.3510;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 64383670 rs3741607 T C 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.39;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4498;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 64472803 rs789710 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 64519806 rs789722 T C 100 PASS AA=t;AC=1;AF=0.60;AFR_AF=0.69;AMR_AF=0.48;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5978;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 64587633 rs699638 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9957;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 64609562 rs2335390 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 64668659 rs6581534 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2760;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 64669090 rs1002392 C A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.51;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.81;LDAF=0.6713;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 64678416 rs12581905 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.19;AMR_AF=0.21;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2738;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 64803798 rs11175383 A C 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.40;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2780;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 64818341 rs61931551 A G 100 PASS AA=A;AC=2;AF=0.28;AFR_AF=0.40;AMR_AF=0.22;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2813;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 65004520 rs77813527 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9950;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1377;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +12 65004550 rs117122731 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9936;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1054;RSQ=0.9754;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-3.59,-0.51,-0.16 +12 65146532 rs1147096 C T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.94;AMR_AF=0.62;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7541;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 65514266 rs7301320 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8048;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 66517828 rs2464304 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.08,-0.00 +12 66531694 rs1185629 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9843;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 66546100 rs8793 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.24;AMR_AF=0.27;AN=2;ASN_AF=0.88;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4704;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 66605228 rs1152888 A G 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.41;AMR_AF=0.90;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7189;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 66696410 rs3741604 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.13;AMR_AF=0.34;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3244;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 66698461 rs2118140 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.39;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4482;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 66698895 rs4430553 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.61;AMR_AF=0.39;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4689;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 66698954 rs1971302 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.65;AMR_AF=0.69;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6457;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 66704225 rs75770066 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.03;LDAF=0.0165;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 66717716 rs7957877 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.69;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6568;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 66725160 rs1185244 C T 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.43;AMR_AF=0.57;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4977;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 66725202 rs1168312 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.22;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1681;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 66731864 rs1168329 C A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.62;AMR_AF=0.59;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5438;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 66770869 rs149294743 G C 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.05;AN=2;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0261;RSQ=0.9680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 66786073 rs7970076 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9785;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 66786091 rs7970387 G C 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8601;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 66786644 rs2270594 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8604;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 66814466 rs7397861 C G 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.10;AMR_AF=0.49;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.61;LDAF=0.4019;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 66814487 rs7397862 C A 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.22;AMR_AF=0.51;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4319;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 66856667 rs4913301 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2263;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 67688958 rs78741300 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 67699536 rs17781675 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0352;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 67703909 rs116416219 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0539;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 67706466 rs1060350 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.51;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4264;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 68052178 rs3741644 G T 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.38;AMR_AF=0.61;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5530;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 68595719 rs10748100 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2377;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 68595787 rs10748101 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2198;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 68646521 rs2227491 T C 100 PASS AA=t;AC=1;AF=0.54;AFR_AF=0.60;AMR_AF=0.52;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5411;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 68707287 rs2306392 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2171;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 68707576 rs4575357 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2875;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 68708761 rs2306393 C T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.86;AMR_AF=0.75;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6888;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 68709892 rs17224810 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.26;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1468;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 68715417 rs7964052 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2203;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 68719216 rs2870812 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6833;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 68720627 rs962976 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.81;AMR_AF=0.75;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6774;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 68724951 rs3741808 G T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.81;AMR_AF=0.75;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6773;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 69082805 rs2259588 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2335;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69084541 rs11608404 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.32;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2189;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 69115698 rs17851475 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2326;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69125513 rs7976871 G T 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=0.9949;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1935;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69125514 rs7976876 G T 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=0.9948;ERATE=0.0005;EUR_AF=0.23;LDAF=0.1933;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69135557 rs188835773 A T 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69136252 rs79419059 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0233;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69233215 rs769412 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0734;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69250481 rs3741599 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1211;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69252715 rs1143653 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.27;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69265578 rs2228654 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.30;AMR_AF=0.56;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.5146;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 69646914 rs2305641 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.41;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4351;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 69753830 rs623853 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4739;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +12 69753847 rs554591 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4736;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +12 69967862 rs547497 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.51;AMR_AF=0.54;AN=2;ASN_AF=0.25;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4336;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 69980028 rs485288 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.69;AMR_AF=0.79;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7824;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 69980141 rs484319 G C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8423;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 69986788 rs1043434 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2126;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 69995039 rs11177742 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2025;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 70070942 rs710718 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9515;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 70091432 rs775429 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9762;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 70195439 rs61758770 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0147;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 70928616 rs3752703 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.40;AMR_AF=0.32;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3782;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 70928724 rs582954 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9712;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 70928745 rs3752702 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0991;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 70933687 rs919595 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.56;AMR_AF=0.62;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5883;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 70949620 rs2278341 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9894;ERATE=0.0034;EUR_AF=0.35;LDAF=0.3090;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 70953277 rs2303963 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.19;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1760;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 70956935 rs11178291 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.18;AMR_AF=0.12;AN=2;ASN_AF=0.13;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1618;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 70990054 rs2465811 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.42;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=0.9940;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3059;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 71002865 rs2717430 T A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.79;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.42;LDAF=0.5595;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 71002893 rs2252784 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.76;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5531;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 71003515 rs2252674 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.40;AMR_AF=0.12;AN=2;ASN_AF=0.34;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=0.11;LDAF=0.2379;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.55,-0.00,-5.00 +12 71029431 rs2717417 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.71;AMR_AF=0.34;AN=2;ASN_AF=0.52;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3938;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 71029733 rs2584021 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.26;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.05;LDAF=0.2209;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 71139664 rs3803036 T C 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.33;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7221;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 71526593 rs2270587 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 71960208 rs1797372 G A 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.63;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 71960584 rs1726469 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.63;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 72007084 rs7305505 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.44;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1787;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.60,-0.00 +12 72091025 rs3741690 T G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.79;AMR_AF=0.43;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.5448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 72307616 rs3759171 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.92;AMR_AF=0.52;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.26;LDAF=0.6169;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 72307637 rs11178983 C G 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0439;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 72372862 rs7305115 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.58;AMR_AF=0.48;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5279;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 72388374 rs1007023 G T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.85;LDAF=0.8642;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 72416235 rs4290270 A T 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4944;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 72666702 rs200824580 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9991;ERATE=0.0004;LDAF=0.0008;RSQ=0.5682;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +12 75601389 rs61735712 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.0017;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0656;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.89 +12 75601443 rs61932914 G A 100 PASS AA=g;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.0017;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0604;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.36,-0.25 +12 75687185 rs7967562 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.50;AMR_AF=0.64;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6150;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 75692607 rs7485576 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.04;AMR_AF=0.31;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2921;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 75706720 rs60971359 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3369;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 75785100 rs11180483 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.22;AMR_AF=0.29;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3506;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 75875576 rs1909979 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.16;AMR_AF=0.28;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3378;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 75900702 rs2704766 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.59;AMR_AF=0.60;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6003;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 76446924 rs41292035 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 76449900 rs1059143 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8917;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 76453873 rs10880030 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.27;AMR_AF=0.55;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6130;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 76453966 rs4663 G A 100 PASS AA=g;AC=1;AF=0.61;AFR_AF=0.25;AMR_AF=0.55;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6084;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 76461137 rs10785227 T C 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.31;AMR_AF=0.55;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6211;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 76461145 rs7972289 C T 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.72;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8268;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 76780471 rs73137003 A T 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1266;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 76786349 rs4761423 G A 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.82;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8391;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 77202798 rs10778920 A G 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6415;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +12 77216281 rs17813975 G A 100 PASS AA=G;AC=2;AF=0.11;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1097;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 77438436 rs2242384 T C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1975;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 77438607 rs2242383 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.57;AMR_AF=0.56;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 77439823 rs61754233 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 77449790 rs310791 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.67;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 78225374 rs10735309 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9785;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 78334053 rs1731740 G C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8984;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 78513767 rs300443 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0526;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 78530979 rs1852464 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.79;AMR_AF=0.60;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6174;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 78531156 rs2290103 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.31;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3426;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 78542594 rs444864 T G 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.48;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3941;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 78542699 rs366527 T C 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.35;LDAF=0.3945;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 78562618 rs383190 A G 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0422;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 78562687 rs1726431 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9624;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 78569059 rs2442134 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9630;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 78582362 rs300513 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9458;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 78582566 rs400289 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0009;EUR_AF=0.98;LDAF=0.9462;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 78590983 rs300497 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.16;AVGPOST=0.9854;ERATE=0.0095;EUR_AF=0.42;LDAF=0.2627;RSQ=0.9739;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 78594405 rs3214044 T A 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.41;AMR_AF=0.38;AN=2;ASN_AF=0.52;AVGPOST=0.9065;ERATE=0.1112;EUR_AF=0.29;LDAF=0.3937;RSQ=0.8279;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 78598891 rs9971904 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.63;AMR_AF=0.56;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6044;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 79611374 rs2037743 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 79685913 rs2272500 C A 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.31;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3953;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 80014907 rs78187003 A C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.96;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.8739;ERATE=0.0348;EUR_AF=0.18;LDAF=0.4839;RSQ=0.8627;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:0.850:-0.48,-0.48,-0.48 +12 81533078 rs2107415 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.04;AMR_AF=0.40;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.47;LDAF=0.2518;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 81627238 rs1921038 C T 100 PASS AA=T;AC=2;AF=0.20;AFR_AF=0.10;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.1998;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 82751955 rs6539662 A G 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.72;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8804;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +12 82752633 rs4882530 G A 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.67;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8677;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +12 82783668 rs10778908 C T 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.78;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.96;LDAF=0.9285;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 82792787 rs4296098 C A 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.77;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9264;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 83290083 rs35725509 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0016;EUR_AF=0.01;LDAF=0.0051;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 83358930 rs2403023 A G 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.34;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6506;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 83525962 rs7970515 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.30;AMR_AF=0.30;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2742;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 85277561 rs17183577 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.0041;AMR_AF=0.16;AN=2;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1088;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 85277608 rs17183612 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.31;LDAF=0.1493;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 85674021 rs142324538 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 86272378 rs58553548 A T 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.29;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2097;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 88380094 rs10777084 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.78;AMR_AF=0.13;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.09;LDAF=0.2399;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 88440676 rs9262 G C 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.12;AMR_AF=0.55;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5096;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 88547277 rs2468230 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 88900891 rs41283112 C A 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0049;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 88910307 rs2291557 C T 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0585;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 89743223 rs704075 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9876;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 89744773 rs770087 A C 100 PASS AA=C;AC=2;AF=0.19;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1879;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +12 89744826 rs808820 A G 100 PASS AA=G;AC=2;AF=0.11;AFR_AF=0.14;AMR_AF=0.18;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1079;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.91,-0.06 +12 89818925 rs199852870 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 89853408 rs4842658 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.78;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7540;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 90028901 rs1050395 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1326;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 91449984 rs12320366 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.59;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 91449990 rs2735333 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.24;AMR_AF=0.72;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.6572;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 92539344 rs709223 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.96;AMR_AF=0.74;AN=2;ASN_AF=0.70;AVGPOST=0.9868;ERATE=0.0014;EUR_AF=0.86;LDAF=0.8178;RSQ=0.9662;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-2.98,-0.46,-0.18 +12 92814974 rs149552124 A G 100 PASS AA=A;AC=1;AF=0.0032;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 93100366 rs17020629 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0444;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 93155535 rs1504907 G A 100 PASS AA=A;AC=1;AF=0.87;AFR_AF=0.83;AMR_AF=0.87;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8732;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 93171278 rs4760496 T G 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.1948;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 93196422 rs10745623 T G 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.50;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9955;ERATE=0.0048;EUR_AF=0.63;LDAF=0.7025;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 93206878 rs3925797 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.83;AMR_AF=0.94;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9200;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 93226666 rs7296923 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.1947;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 93236402 rs7300619 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.90;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9543;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 93258665 rs17194451 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.1947;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 93258808 rs61935280 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.1486;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 93788339 rs12811952 A T 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.21;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1412;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.84,-0.07 +12 94243853 rs56944668 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2354;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 94543506 rs2230754 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.56;AMR_AF=0.48;AN=2;ASN_AF=0.45;AVGPOST=0.9914;ERATE=0.0009;EUR_AF=0.32;LDAF=0.4364;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-1.72,-0.01,-5.00 +12 94580286 rs3751189 T C 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.31;AMR_AF=0.27;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2495;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 94621058 rs2291333 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.07;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 94645255 rs2230757 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.49;AMR_AF=0.68;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6165;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 94649103 rs865569 T C 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.56;AMR_AF=0.78;AN=2;ASN_AF=0.60;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.85;LDAF=0.7089;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 94688232 rs1880934 C A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.98;AMR_AF=0.73;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.8262;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.93 +12 94694872 rs55787485 T G 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 94769758 rs4761611 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.98;AMR_AF=0.74;AN=2;ASN_AF=0.98;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.68;LDAF=0.8338;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 94769769 rs74340001 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0290;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 94972290 rs2270893 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.54;AMR_AF=0.57;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5283;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 94975799 rs3747553 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.89;AMR_AF=0.61;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.56;LDAF=0.6549;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 94976084 rs3747552 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.92;AMR_AF=0.63;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6676;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 94976159 rs3747551 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.36;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3329;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 95044161 rs1274523 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.94;AMR_AF=0.96;AN=2;ASN_AF=0.98;AVGPOST=0.9047;ERATE=0.0061;EUR_AF=0.97;LDAF=0.9403;RSQ=0.3435;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-3.70,-0.51,-0.16 +12 95452311 rs142620547 G C 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0218;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 95500727 rs7138545 C G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.56;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6311;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 95531442 rs11829776 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.21;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1769;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 95602672 rs2306884 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.19;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1490;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 95694394 rs14121 G A 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.94;AMR_AF=0.72;AN=2;ASN_AF=0.68;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.69;LDAF=0.7476;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 95927762 rs3812813 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.88;AMR_AF=0.68;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.55;LDAF=0.6855;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96180692 rs59294014 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.06;AMR_AF=0.24;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1746;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 96184102 rs11108265 G A 100 PASS AA=g;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.26;AN=2;ASN_AF=0.04;AVGPOST=0.9796;ERATE=0.0008;EUR_AF=0.28;LDAF=0.1523;RSQ=0.9437;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-2.86,-0.27,-0.34 +12 96260947 rs7960706 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.22;AMR_AF=0.36;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2934;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96284650 rs6538681 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.91;AMR_AF=0.57;AN=2;ASN_AF=0.72;AVGPOST=0.9947;ERATE=0.0082;EUR_AF=0.73;LDAF=0.7425;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 96292170 rs75959092 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0644;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96312686 rs12368787 C A 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0736;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 96337164 rs7955759 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.42;AVGPOST=0.9856;ERATE=0.0017;EUR_AF=0.24;LDAF=0.2454;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-0.28,-0.32,-4.22 +12 96337183 rs7955450 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.71;AMR_AF=0.64;AN=2;ASN_AF=0.94;AVGPOST=0.9905;ERATE=0.0008;EUR_AF=0.58;LDAF=0.7138;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.65,-4.70 +12 96337225 rs1436121 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.42;AVGPOST=0.9948;ERATE=0.0009;EUR_AF=0.25;LDAF=0.2476;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.45 +12 96346594 rs1982138 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2409;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96359426 rs4762658 C G 100 PASS AA=c;AC=1;AF=0.66;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96371894 rs4762659 C T 100 PASS AA=T;AC=1;AF=0.89;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 96374554 rs6538693 G A 100 PASS AA=A;AC=1;AF=0.89;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8898;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 96374563 rs6538694 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8674;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 96374614 rs7297245 C T 100 PASS AA=T;AC=1;AF=0.89;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8899;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 96374672 rs6538695 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.91;AMR_AF=0.86;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8716;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 96379806 rs3213737 G A 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4456;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 96384345 rs17676826 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.29;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.33;LDAF=0.3350;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 96387621 rs2302629 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.75;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5654;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96387829 rs17677007 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.05;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0848;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96641016 rs35332676 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0561;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96653501 rs4762144 C T 100 PASS AA=T;AC=1;AF=0.91;AFR_AF=0.90;AMR_AF=0.88;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9112;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 96694162 rs10777781 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9848;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 97311541 rs4762339 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.63;AMR_AF=0.58;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.44;LDAF=0.5362;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 97338596 rs17026162 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0334;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 98925650 rs3213901 G T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.66;AMR_AF=0.49;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5160;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 98927830 rs17459334 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 100041942 rs79915291 T A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.37;AMR_AF=0.21;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2499;RSQ=0.9994;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 100042040 rs11109968 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.31;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.31;LDAF=0.2373;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 100042163 rs11109969 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2354;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 100466528 rs143906625 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0082;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 100478207 rs146782635 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0087;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 100709313 rs7968030 T A 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.26;AN=2;ASN_AF=0.10;AVGPOST=0.9969;ERATE=0.0035;EUR_AF=0.27;LDAF=0.1843;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 100806503 rs11568536 C T 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.24;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.49;LDAF=0.3465;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 100813976 rs11568537 A C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.35;AMR_AF=0.46;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3848;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +12 101016042 rs10860612 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.09;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.07;LDAF=0.1247;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 101017445 rs1469385 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.70;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=0.9978;ERATE=0.0016;EUR_AF=0.78;LDAF=0.8162;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 101683929 rs703715 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.81;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6458;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 101687043 rs2290720 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.15;AMR_AF=0.37;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3391;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 101701930 rs7975348 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.85;AMR_AF=0.63;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.6874;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 101713434 rs201682109 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +12 101728166 rs2002895 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.75;AMR_AF=0.49;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.5759;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 101732655 rs56265469 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2687;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 101734277 rs7963896 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.80;AMR_AF=0.49;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.5859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 101736381 rs2270861 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2683;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 101750814 rs10082778 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9936;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 101757530 rs2305862 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.26;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2395;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 101790373 rs73159756 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.19;LDAF=0.2204;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102036305 rs2293468 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.31;AMR_AF=0.25;AN=2;ASN_AF=0.38;AVGPOST=0.9984;ERATE=0.0024;EUR_AF=0.29;LDAF=0.3114;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 102045031 rs825045 A T 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.16;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0626;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 102046595 rs1997204 T C 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.82;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9342;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102057166 rs2254631 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.43;AMR_AF=0.77;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.5887;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102064118 rs7139095 T C 100 PASS AA=C;AC=1;AF=0.97;AFR_AF=0.95;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102108301 rs2066920 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1253;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102117589 rs11082 C T 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.80;AMR_AF=0.57;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6929;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102154900 rs759935 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.78;AMR_AF=0.56;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6924;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102158763 rs10778148 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.61;AMR_AF=0.56;AN=2;ASN_AF=0.91;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6526;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102224436 rs4764655 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1197;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102295218 rs7295569 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.88;AMR_AF=0.57;AN=2;ASN_AF=0.90;AVGPOST=0.9918;ERATE=0.0201;EUR_AF=0.48;LDAF=0.6945;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 102301915 rs61936575 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1100;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 103696182 rs79387839 T G 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1279;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 103872172 rs10778257 T G 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.28;AMR_AF=0.70;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5447;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 103988311 rs703597 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1244;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104044241 rs12829198 G A 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.17;AMR_AF=0.23;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2199;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104064574 rs17034336 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0361;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104067812 rs11614418 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.36;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3893;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104069795 rs7973658 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0315;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104086631 rs703651 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.45;AMR_AF=0.38;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4612;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 104092996 rs697210 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.40;AMR_AF=0.34;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0051;EUR_AF=0.29;LDAF=0.3448;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104099544 rs11111718 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.38;AN=2;ASN_AF=0.13;AVGPOST=0.9990;ERATE=0.0035;EUR_AF=0.30;LDAF=0.2503;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0171;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104124061 rs4981042 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.98;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8607;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 104136316 rs2292688 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1449;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104138918 rs2292687 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.38;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3534;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +12 104140517 rs2056128 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.83;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.55;LDAF=0.6867;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104147178 rs3751199 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1818;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104149251 rs7296626 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9738;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 104151931 rs12425537 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.0041;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1198;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104153004 rs2271637 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2911;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104155075 rs55724382 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1333;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104157234 rs1057892 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1344;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104171742 rs17034524 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2363;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104174192 rs1866292 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2674;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104179271 rs11111771 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2633;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104186946 rs1866295 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.24;AMR_AF=0.30;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3405;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104186995 rs61748068 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.0041;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1325;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104187092 rs1866296 G A 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.24;AMR_AF=0.47;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4730;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 104190854 rs73192052 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.24;AN=2;ASN_AF=0.39;AVGPOST=0.9950;ERATE=0.0072;EUR_AF=0.18;LDAF=0.2165;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104190855 rs73192053 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.22;AMR_AF=0.27;AN=2;ASN_AF=0.55;AVGPOST=0.9935;ERATE=0.0054;EUR_AF=0.18;LDAF=0.3012;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104327979 rs6615 C T 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1426;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 104337667 rs1882019 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1330;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104370850 rs3829300 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1344;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 104380734 rs2888805 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0012;EUR_AF=0.09;LDAF=0.1327;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104387138 rs79806135 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1344;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104413436 rs11553765 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1371;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 104476255 rs78717299 G C 100 PASS AA=G;AC=2;AF=0.03;AFR_AF=0.0020;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0320;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 104520054 rs12426862 T C 100 PASS AA=T;AC=2;AF=0.09;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 105431835 rs10861315 T G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2660;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105433463 rs4964120 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2605;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105433523 rs4964317 T A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2660;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105433607 rs4964318 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.77;AMR_AF=0.47;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6332;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105434467 rs11112330 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2605;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105534025 rs1196808 G A 100 PASS AA=A;AC=1;AF=0.91;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9144;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105546172 rs1663564 G A 100 PASS AA=A;AC=1;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9660;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105550565 rs35149056 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0417;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105558566 rs117460788 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0180;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105568122 rs935241 G A 100 PASS AA=A;AC=1;AF=0.91;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9150;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105568176 rs935240 G A 100 PASS AA=A;AC=1;AF=0.91;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9149;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105570981 rs73179990 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.24;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 105583747 rs73179996 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.24;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1056;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 106461760 rs3741884 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1034;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 106477745 rs77900992 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 106704974 rs4964460 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.97;AMR_AF=0.70;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.76;LDAF=0.6764;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 106708278 rs2253838 T G 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.83;AMR_AF=0.69;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.76;LDAF=0.6398;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 106763013 rs7134881 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.62;AMR_AF=0.33;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3094;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 106820986 rs141885523 T C 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0010;RSQ=0.8942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 106838340 rs10861607 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3327;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 106903321 rs13561 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.3378;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 107083059 rs7961392 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.32;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2660;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 107395106 rs8192440 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.85;AMR_AF=0.75;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7861;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 107712880 rs10082935 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.17;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1039;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 107713511 rs961498 G C 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.24;AMR_AF=0.44;AN=2;ASN_AF=0.42;AVGPOST=0.9952;ERATE=0.0007;EUR_AF=0.50;LDAF=0.4110;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +12 107713696 rs111260184 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.24;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9795;ERATE=0.0029;EUR_AF=0.50;LDAF=0.4095;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +12 107937768 rs1558781 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1810;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 108029186 rs73187339 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0765;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 108086697 rs2287216 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.40;LDAF=0.2217;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 108086896 rs2287215 A C 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2650;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 108127965 rs17306603 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.2203;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 108136172 rs2302734 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.40;LDAF=0.2213;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 108140032 rs3803120 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.2212;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 108150758 rs1814335 C A 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 108686008 rs1057401 C G 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.63;AMR_AF=0.38;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.42;LDAF=0.3568;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 108917318 rs35517322 C T 100 PASS AA=c;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0405;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 108918146 rs2303633 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.71;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8258;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 108918330 rs2303632 G T 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2429;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 108919390 rs7963063 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2441;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 108923950 rs1549096 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.71;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8263;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 108943028 rs2052423 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.71;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8263;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 108954823 rs1063936 C T 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.46;AMR_AF=0.82;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7674;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 108956357 rs2287554 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=0.9871;ERATE=0.0007;EUR_AF=0.42;LDAF=0.2498;RSQ=0.9751;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +12 109182049 rs3741778 T C 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.67;AMR_AF=0.49;AN=2;ASN_AF=0.69;AVGPOST=0.9953;ERATE=0.0095;EUR_AF=0.30;LDAF=0.5158;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 109182346 rs146128442 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +12 109278747 rs2111902 T G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.55;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.33;LDAF=0.4551;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 109511256 rs7967322 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8542;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 109577735 rs2878960 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.25;AMR_AF=0.45;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.4342;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 109617865 rs11065772 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7176;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 109629457 rs7135947 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.21;AMR_AF=0.52;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3882;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 109637188 rs7299171 G C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.71;AMR_AF=0.58;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5503;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 109670468 rs3742027 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=0.67;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8697;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 109670657 rs3742026 G C 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.23;AMR_AF=0.45;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.35;LDAF=0.3437;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.56,-0.00 +12 109675029 rs2241220 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.75;AMR_AF=0.86;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7916;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 109683575 rs10744772 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.42;AMR_AF=0.74;AN=2;ASN_AF=0.72;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.68;LDAF=0.6423;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 109685545 rs2284689 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.63;AMR_AF=0.82;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.84;LDAF=0.7596;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 109691991 rs2075259 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.63;AMR_AF=0.82;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.84;LDAF=0.7376;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 109696838 rs2075260 G A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.71;AMR_AF=0.83;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.84;LDAF=0.7700;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 109704177 rs2075262 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.50;AMR_AF=0.46;AN=2;ASN_AF=0.38;AVGPOST=0.9972;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4757;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 109717697 rs10774641 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.16;AMR_AF=0.39;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3446;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 109937534 rs7298565 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.74;AMR_AF=0.51;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5187;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 109968427 rs12679 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.27;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1010;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 109994870 rs9593 A T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.71;AMR_AF=0.51;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5141;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 110011229 rs10774774 G T 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.45;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=0.28;LDAF=0.2902;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-3.38,-0.29,-0.32 +12 110011230 rs10774775 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.45;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2899;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:1.850:-3.36,-0.29,-0.32 +12 110013879 rs7957619 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.10;AMR_AF=0.12;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0936;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 110221631 rs10774894 G C 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5695;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 110240838 rs3825394 T G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.74;AMR_AF=0.66;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.7130;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 110340852 rs11539159 G A 100 PASS AA=G;AC=2;AF=0.09;AFR_AF=0.20;AMR_AF=0.10;AN=2;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.09;LDAF=0.0927;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 110341933 rs10774978 A G 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.61;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2532;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.03,-0.00 +12 110346787 rs1567471 T A 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.61;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2532;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +12 110456175 rs2302689 A G 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.61;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2523;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 110734373 rs12306206 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0201;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 110777078 rs112499287 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 110783217 rs79155063 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0076;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 110824112 rs56130410 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.08;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0594;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 110826463 rs28670753 C T 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.40;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1604;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 110874504 rs201277439 T A 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.42;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9260;ERATE=0.0770;EUR_AF=0.42;LDAF=0.4202;RSQ=0.8418;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 110931054 rs56017652 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.29;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1111;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 111066562 rs12307716 T A 100 PASS AA=t;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9990;ERATE=0.0003;LDAF=0.0205;RSQ=0.9798;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 111160003 rs1973505 G A 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.50;AMR_AF=0.13;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1974;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 111317904 rs35762292 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.25;AMR_AF=0.25;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1696;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 111342558 rs34300256 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.30;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1701;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 111352113 rs115522476 A G 100 PASS AA=A;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 111736417 rs112918730 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=0.9979;ERATE=0.0004;LDAF=0.0085;RSQ=0.9081;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.09 +12 111758620 rs4766505 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.84;AMR_AF=0.40;AN=2;ASN_AF=0.89;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.25;LDAF=0.5760;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 111785586 rs3803167 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.61;AMR_AF=0.43;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.24;LDAF=0.5023;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 111786082 rs6490073 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 111856443 rs7963692 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.42;AMR_AF=0.05;AN=2;AVGPOST=0.9888;ERATE=0.0012;LDAF=0.1060;RSQ=0.9640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.42,-0.21,-2.20 +12 111856493 rs7972796 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.41;AMR_AF=0.05;AN=2;AVGPOST=0.9953;ERATE=0.0006;LDAF=0.1020;RSQ=0.9827;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.47 +12 111884608 rs3184504 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.97;AMR_AF=0.70;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.53;LDAF=0.7810;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 111894072 rs2073950 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.16;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2308;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 111895203 rs2301622 C G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.77;AMR_AF=0.36;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.5343;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 111895209 rs12301585 A C 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.41;AMR_AF=0.05;AN=2;AVGPOST=0.9985;ERATE=0.0015;LDAF=0.0990;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 111926255 rs78209549 T G 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0361;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 111951375 rs16941540 T G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.42;AMR_AF=0.05;AN=2;AVGPOST=0.9997;ERATE=0.0002;LDAF=0.1025;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 112375990 rs3752630 A C 100 PASS AA=N;AC=1;AF=0.22;AFR_AF=0.32;AMR_AF=0.16;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2239;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 112471090 rs12298022 G T 100 PASS AA=G;AC=2;AF=0.11;AFR_AF=0.30;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1083;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 112915434 rs41279090 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0434;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 113328677 rs139437123 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0076;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113348849 rs7955146 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.31;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0763;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 113348870 rs1131454 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.16;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4864;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113357193 rs10774671 G A 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6390;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113357209 rs1131476 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.98;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7815;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113357237 rs1051042 G C 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.98;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7811;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113376320 rs3815178 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.78;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7725;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 113376331 rs1859331 C A 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=0.9970;ERATE=0.0006;EUR_AF=0.64;LDAF=0.6818;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113376388 rs1859330 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9961;ERATE=0.0007;EUR_AF=0.64;LDAF=0.6837;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113376452 rs1859329 C T 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.78;AVGPOST=0.9962;ERATE=0.0009;EUR_AF=0.65;LDAF=0.7737;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.38,-0.02 +12 113385918 rs7961861 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.57;AMR_AF=0.64;AN=2;ASN_AF=0.89;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6514;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113386616 rs34647135 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3094;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +12 113386950 rs2285932 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8238;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113398919 rs2072136 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.63;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.24;LDAF=0.3108;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113403675 rs61942233 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0070;RSQ=0.8989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113405181 rs1557866 A C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8241;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +12 113425154 rs1293767 C G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.99;AMR_AF=0.79;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8272;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113435293 rs1293756 C A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.98;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8510;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113435450 rs1293755 A T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.98;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8510;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113444418 rs929291 T C 100 PASS AA=.;AC=2;AF=0.75;AFR_AF=0.67;AMR_AF=0.75;AN=2;ASN_AF=0.90;AVGPOST=0.9941;ERATE=0.0030;EUR_AF=0.69;LDAF=0.7487;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113445605 rs45519139 G A 100 PASS AA=.;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0279;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 113445768 rs1293746 G A 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2573;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113448288 rs15895 A G 100 PASS AA=.;AC=2;AF=0.83;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.8305;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113531295 rs1625170 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.91;AMR_AF=0.88;AN=2;ASN_AF=0.81;AVGPOST=0.9769;ERATE=0.0005;EUR_AF=0.78;LDAF=0.8303;RSQ=0.9394;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +12 113531305 rs1674095 A T 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.83;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=0.9812;ERATE=0.0006;EUR_AF=0.75;LDAF=0.7834;RSQ=0.9560;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.42,-0.02 +12 113533050 rs2243397 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.83;AMR_AF=0.87;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7973;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113533124 rs2243396 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.83;AMR_AF=0.87;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7966;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113539822 rs1674101 A G 100 PASS AA=g;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.97;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9062;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113541940 rs1613480 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.74;AMR_AF=0.84;AN=2;ASN_AF=0.78;AVGPOST=0.9766;ERATE=0.0031;EUR_AF=0.74;LDAF=0.7633;RSQ=0.9512;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 113544874 rs2468355 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.82;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8020;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 113553408 rs1284878 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.80;AMR_AF=0.85;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.76;LDAF=0.7937;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 113553481 rs1284879 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.78;AMR_AF=0.85;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7899;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.35,-0.00 +12 113731169 rs117183215 G A 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0014;EUR_AF=0.0040;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 113796566 rs7965471 A C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.89;AMR_AF=0.44;AN=2;ASN_AF=0.58;AVGPOST=0.8767;ERATE=0.0049;EUR_AF=0.55;LDAF=0.6055;RSQ=0.8147;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.050:-3.15,-0.48,-0.18 +12 114261053 rs11066773 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1038;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 114282496 rs2075387 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2221;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 114296745 rs10744803 C T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.60;AMR_AF=0.70;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7304;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 114362483 rs3782456 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.53;AMR_AF=0.71;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.60;LDAF=0.7030;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 114377899 rs7299217 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9954;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 114393028 rs1037747 C G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.83;AMR_AF=0.75;AN=2;ASN_AF=0.98;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.60;LDAF=0.7759;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 114793513 rs201152128 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0010;RSQ=0.9009;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 114832510 rs2236017 C A 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.40;AMR_AF=0.68;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5101;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 115118997 rs515746 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.45;AMR_AF=0.45;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4703;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 117217141 rs4767452 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.79;AMR_AF=0.92;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8857;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 117383320 rs4076700 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.27;AMR_AF=0.83;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6842;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 117465857 rs4529958 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9248;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 117685138 rs2291908 T C 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.19;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3651;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 117685270 rs1047735 G A 100 PASS AA=g;AC=2;AF=0.36;AFR_AF=0.19;AMR_AF=0.50;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3605;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 117696164 rs1093329 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.66;AMR_AF=0.59;AN=2;ASN_AF=0.61;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.44;LDAF=0.5597;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118464688 rs5745870 A G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.36;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3884;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118464872 rs5745871 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1586;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 118467553 rs4767654 A G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.42;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4698;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118473054 rs9788041 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.28;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3468;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118476079 rs11068780 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.16;LDAF=0.1559;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 118506186 rs67405503 A T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4024;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 118509124 rs11613924 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.13;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1221;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 118509148 rs7308222 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.73;AMR_AF=0.58;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6468;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118509157 rs7296643 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.79;AMR_AF=0.58;AN=2;ASN_AF=0.91;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.43;LDAF=0.6614;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118509191 rs7307331 G A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.71;AMR_AF=0.46;AN=2;ASN_AF=0.76;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.27;LDAF=0.5264;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118520170 rs7488309 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.51;AMR_AF=0.56;AN=2;ASN_AF=0.63;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5121;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118520240 rs6490164 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.95;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7179;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 118574182 rs2293444 A C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.38;AMR_AF=0.23;AN=2;ASN_AF=0.51;AVGPOST=0.9769;ERATE=0.0018;EUR_AF=0.12;LDAF=0.2979;RSQ=0.9601;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +12 118597943 rs79932870 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0288;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 118682751 rs428073 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.74;AMR_AF=0.73;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7075;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 119540203 rs73213730 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.10;AMR_AF=0.08;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0755;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 119554850 rs78853017 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.07;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.02;LDAF=0.0364;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 119563325 rs12422371 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2439;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 119568596 rs7297606 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0873;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 119568670 rs7298583 C A 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.48;AMR_AF=0.61;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5641;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +12 119937983 rs482802 A C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.93;AMR_AF=0.78;AN=2;ASN_AF=0.88;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8114;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 119978404 rs708889 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.43;AMR_AF=0.26;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2866;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 120171995 rs278109 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.94;AMR_AF=0.89;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7779;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120189879 rs904655 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.62;AMR_AF=0.68;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5769;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120189888 rs904654 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.44;AMR_AF=0.64;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5189;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120220282 rs440299 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.34;AMR_AF=0.59;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4415;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120270528 rs4767849 T C 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.44;AMR_AF=0.70;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0017;EUR_AF=0.63;LDAF=0.6498;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +12 120575549 rs3864938 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9981;RSQ=0.7845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120580606 rs182556738 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0053;RSQ=0.9529;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 120589160 rs2286046 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.98;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.75;LDAF=0.8717;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 120591251 rs10735071 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.98;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8688;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +12 120637199 rs1045110 G A 100 PASS AA=G;AC=2;AF=0.07;AFR_AF=0.01;AMR_AF=0.19;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0690;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120661977 rs4767884 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.97;AMR_AF=0.80;AN=2;ASN_AF=0.98;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.75;LDAF=0.8697;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.36,-0.02 +12 120741382 rs61748115 G A 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0799;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120750239 rs2261612 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.69;AMR_AF=0.75;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6548;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120750517 rs16950058 A G 100 PASS AA=A;AC=2;AF=0.08;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0795;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120762837 rs5634 A G 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0846;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120800823 rs757123 A G 100 PASS AA=a;AC=2;AF=0.92;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.86;LDAF=0.9189;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120884328 rs2235217 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2825;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 120903610 rs75905531 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.36;AVGPOST=0.9983;ERATE=0.0012;EUR_AF=0.08;LDAF=0.1496;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 120941927 rs7136951 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3160;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 120947788 rs4766968 G C 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2846;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 120947948 rs500003 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +12 120966921 rs3742052 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2847;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 120995332 rs2292681 G A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.18;AMR_AF=0.63;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5639;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 120998481 rs787949 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121004590 rs546417 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2857;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 121017171 rs7174 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8048;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121017243 rs509445 A C 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2861;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 121017264 rs2301456 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.07;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2802;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 121017439 rs563920 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.74;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.80;LDAF=0.8013;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121131891 rs2393749 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.84;AMR_AF=0.49;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5174;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121132100 rs7964786 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.84;AMR_AF=0.49;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5174;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121151093 rs11829037 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.32;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1230;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 121157851 rs3752531 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.47;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3126;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 121174899 rs3914 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.60;AMR_AF=0.55;AN=2;ASN_AF=0.48;AVGPOST=0.9686;ERATE=0.0292;EUR_AF=0.44;LDAF=0.5029;RSQ=0.9528;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +12 121176083 rs1799958 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1778;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 121176679 rs3915 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.95;AMR_AF=0.61;AN=2;ASN_AF=0.52;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6151;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121177272 rs3916 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.07;AMR_AF=0.32;AN=2;ASN_AF=0.12;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.26;LDAF=0.1901;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 121222411 rs3213570 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.06;AMR_AF=0.52;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3848;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 121248584 rs674021 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.94;AMR_AF=0.82;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8314;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121432117 rs56348580 G C 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.21;AMR_AF=0.38;AN=2;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2136;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +12 121437221 rs1169304 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.59;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7975;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121437382 rs1169305 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9907;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.69,-0.00 +12 121454257 rs2258227 T A 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.61;AMR_AF=0.91;AN=2;ASN_AF=0.88;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8046;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121614934 rs7132846 C T 100 PASS AA=C;AC=2;AF=0.13;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121615131 rs2230911 C G 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1435;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121622239 rs3751144 C T 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1426;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121622419 rs3751142 G T 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1435;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121622520 rs1653624 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9902;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +12 121659684 rs7298368 C T 100 PASS AA=C;AC=2;AF=0.22;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2216;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121659999 rs1629287 G A 100 PASS AA=g;AC=2;AF=0.36;AFR_AF=0.35;AMR_AF=0.35;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3566;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121660787 rs25643 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.40;AMR_AF=0.38;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4106;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 121666646 rs25644 A G 100 PASS AA=A;AC=2;AF=0.17;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1664;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121690548 rs2686344 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7266;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121690555 rs2686345 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7266;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121691096 rs1132780 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.29;AMR_AF=0.26;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2277;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121773552 rs3751162 T C 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.23;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7258;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 121789887 rs1647256 T A 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.14;AMR_AF=0.77;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.87;LDAF=0.6270;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +12 121789927 rs1799525 C A 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.13;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9936;ERATE=0.0005;EUR_AF=0.66;LDAF=0.5212;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 121878659 rs1064951 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.41;LDAF=0.3564;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 121880520 rs3751131 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3565;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-0.93,-0.05,-5.00 +12 121881848 rs10849885 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9970;ERATE=0.0014;EUR_AF=0.41;LDAF=0.3509;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 121882098 rs3817551 T G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3576;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122231368 rs2707067 C A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.56;AMR_AF=0.85;AN=2;ASN_AF=0.98;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.80;LDAF=0.8030;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +12 122231573 rs2707066 C T 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.53;AMR_AF=0.84;AN=2;ASN_AF=0.96;AVGPOST=0.9872;ERATE=0.0009;EUR_AF=0.80;LDAF=0.7819;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +12 122281575 rs1795963 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.89;AMR_AF=0.66;AN=2;ASN_AF=0.83;AVGPOST=0.9984;ERATE=0.0044;EUR_AF=0.59;LDAF=0.7332;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 122292609 rs140788110 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0111;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122295335 rs1154510 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8670;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122326812 rs2230681 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.84;AVGPOST=0.9960;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8340;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122353796 rs14259 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3069;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122369762 rs7313748 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3038;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122372295 rs146522464 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +12 122396395 rs17852561 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3038;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122405912 rs1169081 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.34;AN=2;ASN_AF=0.48;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3136;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122439369 rs1182927 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.93;AMR_AF=0.79;AN=2;ASN_AF=0.83;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8659;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122497001 rs28629903 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.35;AMR_AF=0.59;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5153;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 122657271 rs7974857 G C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1228;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 122658379 rs61955584 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1353;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 122658383 rs6489173 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9992;RSQ=0.8380;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 122674758 rs4758651 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.35;AMR_AF=0.62;AN=2;ASN_AF=0.92;AVGPOST=0.9915;ERATE=0.0043;EUR_AF=0.75;LDAF=0.6806;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122674780 rs11060094 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.03;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1397;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 122675882 rs67032306 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.02;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1461;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +12 122676013 rs11060167 A C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.08;AMR_AF=0.20;AN=2;ASN_AF=0.72;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3311;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122689161 rs12827843 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.63;AVGPOST=0.9943;ERATE=0.0084;EUR_AF=0.27;LDAF=0.3186;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.40,-0.00,-5.00 +12 122689181 rs7136356 C G 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.48;AMR_AF=0.30;AN=2;ASN_AF=0.72;AVGPOST=0.9979;ERATE=0.0100;EUR_AF=0.30;LDAF=0.4492;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.76,-0.01,-5.00 +12 122691738 rs4758675 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9949;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 122701001 rs2271411 T A 100 PASS AA=-;AC=1;AF=0.48;AFR_AF=0.67;AMR_AF=0.34;AN=2;ASN_AF=0.65;AVGPOST=0.9803;ERATE=0.0287;EUR_AF=0.30;LDAF=0.4816;RSQ=0.9743;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122720310 rs2271408 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0029;EUR_AF=0.27;LDAF=0.3218;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 122812503 rs1129167 G C 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.08;AMR_AF=0.48;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4136;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 122817507 rs7956480 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.87;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7982;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 122838956 rs4997380 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.56;AMR_AF=0.65;AN=2;ASN_AF=0.85;AVGPOST=0.9886;ERATE=0.0051;EUR_AF=0.75;LDAF=0.7125;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +12 122991478 rs9988963 C G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.90;AMR_AF=0.65;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7907;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 122993011 rs10773230 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4259;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 123001737 rs57311174 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4260;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123087442 rs7307735 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.86;AMR_AF=0.64;AN=2;ASN_AF=0.85;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7786;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123105174 rs138697044 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0019;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 123281967 rs10744394 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.71;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123333065 rs2135014 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.74;AMR_AF=0.91;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8121;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123335483 rs2271048 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.96;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9551;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +12 123335488 rs63586961 G A 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.74;AMR_AF=0.89;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7936;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +12 123339712 rs2292138 A G 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.74;AMR_AF=0.91;AN=2;ASN_AF=0.75;AVGPOST=0.9941;ERATE=0.0004;EUR_AF=0.87;LDAF=0.8133;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123341289 rs897386 A C 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.57;AMR_AF=0.89;AN=2;ASN_AF=0.75;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7749;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +12 123341297 rs897385 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.74;AMR_AF=0.91;AN=2;ASN_AF=0.75;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8165;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +12 123345347 rs7306948 G A 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.93;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0013;EUR_AF=0.93;LDAF=0.9514;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +12 123345360 rs7298176 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.97;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9616;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +12 123345736 rs10847910 C G 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.75;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9091;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123352179 rs3825143 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.54;AMR_AF=0.89;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.87;LDAF=0.7692;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123433137 rs10848106 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +12 123471402 rs2049506 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9959;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.43,-0.00 +12 123473254 rs1463877 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.78;AMR_AF=0.76;AN=2;ASN_AF=0.84;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7903;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +12 123645803 rs1051431 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.17;AMR_AF=0.72;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6782;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123647725 rs1727296 G C 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.17;AMR_AF=0.72;AN=2;ASN_AF=0.97;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6770;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123651162 rs1716167 A G 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.17;AMR_AF=0.72;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6787;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123665695 rs1727306 A G 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.17;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6901;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123694724 rs2682434 C T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.17;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6874;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123699245 rs10846484 G A 100 PASS AA=G;AC=2;AF=0.01;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0146;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123746357 rs4759416 C G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.17;AMR_AF=0.72;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.76;LDAF=0.6852;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123751726 rs2271976 A C 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.11;AMR_AF=0.12;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1577;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123794022 rs6488867 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9566;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123812207 rs7959415 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.97;AMR_AF=0.94;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9040;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123812611 rs10846517 A G 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.97;AMR_AF=0.94;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9040;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 123825559 rs12322888 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.45;AMR_AF=0.24;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2207;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 123950471 rs112947708 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 123968838 rs142573147 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0180;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 123983941 rs9697264 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.68;AMR_AF=0.41;AN=2;ASN_AF=0.01;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3564;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 124008073 rs2292500 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.66;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.87;LDAF=0.8348;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124069213 rs786446 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9901;RSQ=0.9753;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124090453 rs786436 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124209332 rs1139789 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7413;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124209352 rs11837144 C T 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7390;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124210782 rs1399961 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7390;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124220055 rs2271660 T C 100 PASS AA=c;AC=2;AF=0.68;AFR_AF=0.43;AMR_AF=0.71;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6769;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124229429 rs7135542 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.87;AMR_AF=0.75;AN=2;ASN_AF=0.95;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7885;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124265687 rs11057353 T C 100 PASS AA=t;AC=2;AF=0.71;AFR_AF=0.53;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.66;LDAF=0.7119;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124267638 rs11057354 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9455;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124267703 rs11057355 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.83;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7878;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124268458 rs7303002 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.82;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7870;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +12 124274474 rs10846559 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.86;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8272;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124325977 rs4930729 T G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.95;AMR_AF=0.85;AN=2;ASN_AF=0.55;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.90;LDAF=0.8088;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124355082 rs117813833 C T 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0133;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 124364131 rs1317312 G C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.53;AMR_AF=0.54;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.54;LDAF=0.4753;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 124387574 rs58411567 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.50;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3277;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 124387586 rs61587964 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.59;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3489;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 124417889 rs4930721 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.31;AMR_AF=0.31;AN=2;ASN_AF=0.14;AVGPOST=0.9982;ERATE=0.0009;EUR_AF=0.34;LDAF=0.2767;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 124427306 rs11057401 T A 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.31;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2628;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 124798801 rs12318072 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.48;AMR_AF=0.28;AN=2;ASN_AF=0.41;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.16;LDAF=0.3166;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 124810174 rs10846657 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.10;AMR_AF=0.59;AN=2;ASN_AF=0.43;AVGPOST=0.9938;ERATE=0.0006;EUR_AF=0.66;LDAF=0.4607;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-2.02 +12 124820013 rs1106317 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.50;AMR_AF=0.26;AN=2;ASN_AF=0.47;AVGPOST=0.9957;ERATE=0.0006;EUR_AF=0.20;LDAF=0.3483;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 124821696 rs2229842 C T 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.47;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2392;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.28 +12 124829234 rs1263992 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.55;AVGPOST=0.9821;ERATE=0.0015;EUR_AF=0.72;LDAF=0.6060;RSQ=0.9700;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.38 +12 124829255 rs1244085 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.55;AMR_AF=0.60;AN=2;ASN_AF=0.40;AVGPOST=0.9582;ERATE=0.0048;EUR_AF=0.71;LDAF=0.5713;RSQ=0.9370;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +12 124831067 rs2272370 C A 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.28;LDAF=0.3599;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 124832474 rs1244065 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.75;AMR_AF=0.88;AN=2;ASN_AF=0.78;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.85;LDAF=0.8123;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +12 124832492 rs1244064 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.98;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9382;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +12 124838591 rs4765555 C G 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3543;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.76,-0.01,-5.00 +12 124838772 rs1244082 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +12 124838774 rs3817108 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3552;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +12 124839150 rs2271142 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.28;LDAF=0.3548;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +12 124839165 rs2271141 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3550;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.15 +12 124839945 rs870052 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.57;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.28;LDAF=0.4042;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 124856660 rs3741513 T A 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.24;AMR_AF=0.59;AN=2;ASN_AF=0.15;AVGPOST=0.9964;ERATE=0.0006;EUR_AF=0.56;LDAF=0.3876;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +12 124859045 rs2695993 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.86;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9451;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124885249 rs2293514 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.29;AMR_AF=0.67;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5933;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 124934459 rs1147284 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9723;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.23,-0.00 +12 124968359 rs906303 C T 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1136;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-3.09,-0.00,-5.00 +12 124979833 rs872224 C G 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.27;AMR_AF=0.60;AN=2;ASN_AF=0.42;AVGPOST=0.9596;ERATE=0.0015;EUR_AF=0.50;LDAF=0.4413;RSQ=0.9404;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.30,-0.00 +12 125263061 rs3825140 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.39;AVGPOST=0.9912;ERATE=0.0010;EUR_AF=0.0013;LDAF=0.1233;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.28,-0.33 +12 125271090 rs838897 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.38;AMR_AF=0.19;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2428;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125284748 rs5888 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.82;AMR_AF=0.64;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.53;LDAF=0.6691;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 125298877 rs5889 G A 100 PASS AA=G;AC=1;AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0029;EUR_AF=0.0013;LDAF=0.1220;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125398039 rs1071862 G C 100 PASS AA=-;AC=1;AF=0.47;AFR_AF=0.24;AMR_AF=0.59;AN=2;ASN_AF=0.21;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.77;LDAF=0.4738;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125434580 rs4447263 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.38;AMR_AF=0.65;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6191;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +12 125434716 rs4078216 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3020;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125435388 rs10773125 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.28;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9982;ERATE=0.0048;EUR_AF=0.57;LDAF=0.5749;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 125436897 rs4502074 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.42;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.59;LDAF=0.6275;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.10,-0.00 +12 125437019 rs4429156 T C 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.42;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6268;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 125437142 rs6488959 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.21;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2286;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 125438414 rs12367953 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6277;RSQ=0.9983;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +12 125438516 rs4516060 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.42;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6254;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +12 125438523 rs4258464 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6270;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +12 125438549 rs4606565 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6274;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 125444975 rs4765007 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.66;AMR_AF=0.52;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5908;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125448960 rs4076777 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4068;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125453232 rs10773130 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=0.95;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9416;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 125453235 rs11057940 C A 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.80;AMR_AF=0.65;AN=2;ASN_AF=0.86;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7368;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 125453542 rs11614657 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1234;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 125456004 rs4542508 C A 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.78;AMR_AF=0.65;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7309;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +12 125465023 rs4072887 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.56;AMR_AF=0.27;AN=2;ASN_AF=0.43;AVGPOST=0.9974;ERATE=0.0031;EUR_AF=0.34;LDAF=0.3988;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 125467158 rs11558556 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.42;AMR_AF=0.27;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3697;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 125509502 rs7303493 C T 100 PASS AA=t;AC=1;AF=0.43;AFR_AF=0.62;AMR_AF=0.49;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.32;LDAF=0.4328;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125561151 rs12831803 A G 100 PASS AA=a;AC=1;AF=0.19;AFR_AF=0.34;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 125587278 rs3763984 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125591844 rs2297478 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.31;LDAF=0.3578;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125603152 rs35814268 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.14;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1441;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 125612839 rs900411 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.20;AMR_AF=0.31;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3406;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125619308 rs2291248 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.49;AMR_AF=0.44;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0016;EUR_AF=0.40;LDAF=0.4856;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125626685 rs3751180 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.11;AMR_AF=0.04;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0873;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125833964 rs7971264 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2633;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125834095 rs1491893 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.21;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2665;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 125834395 rs3803155 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.32;AMR_AF=0.78;AN=2;ASN_AF=0.83;AVGPOST=0.9960;ERATE=0.0021;EUR_AF=0.73;LDAF=0.6728;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 126003940 rs4765259 A T 100 PASS AA=a;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.29;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1366;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 126068417 rs6489006 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.95;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9476;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 126128871 rs12305906 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.74;AMR_AF=0.61;AN=2;ASN_AF=0.31;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5087;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.02,-0.00,-5.00 +12 126135195 rs3803152 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.74;AMR_AF=0.56;AN=2;ASN_AF=0.31;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4968;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 129559557 rs10773594 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.64;AMR_AF=0.70;AN=2;ASN_AF=0.58;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6444;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 130830906 rs11060836 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.25;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1559;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 130839165 rs10848087 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.24;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1699;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 130847389 rs2242363 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.83;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5900;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 130921471 rs2292663 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.29;AVGPOST=0.9963;ERATE=0.0007;EUR_AF=0.10;LDAF=0.1675;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.02,-1.44 +12 130935710 rs2398519 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9979;RSQ=0.9149;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 130940993 rs61935897 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0513;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 130941150 rs2277361 G C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=0.9981;ERATE=0.0033;EUR_AF=0.43;LDAF=0.3947;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 131276448 rs4759786 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 131285663 rs1881060 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9863;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 131438971 rs56090874 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.10;AMR_AF=0.32;AN=2;ASN_AF=0.55;AVGPOST=0.9982;ERATE=0.0009;EUR_AF=0.20;LDAF=0.2892;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0100;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 131439237 rs7350616 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.16;LDAF=0.0845;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 131439239 rs10848261 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.37;AMR_AF=0.50;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0034;EUR_AF=0.49;LDAF=0.4908;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 131466562 rs4759534 T C 100 PASS AA=c;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9469;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 131471608 rs1547577 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9430;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 131622735 rs7302341 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.35;AMR_AF=0.71;AN=2;ASN_AF=0.93;AVGPOST=0.9982;ERATE=0.0058;EUR_AF=0.65;LDAF=0.6680;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 132237848 rs1982528 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9448;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 132241229 rs7136191 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.8962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +12 132271113 rs7136643 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9930;RSQ=0.9796;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.80,-0.01 +12 132396603 rs11616018 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.31;AMR_AF=0.77;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.82;LDAF=0.5706;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 132399065 rs12303764 T G 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.04;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9939;ERATE=0.0006;EUR_AF=0.36;LDAF=0.2369;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +12 132401642 rs7959651 T C 100 PASS AA=t;AC=2;AF=0.39;AFR_AF=0.15;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=0.9382;ERATE=0.0568;EUR_AF=0.58;LDAF=0.3970;RSQ=0.8910;SNPSOURCE=EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:1.850:-5.00,-1.43,-0.02 +12 132402020 rs4964918 T C 100 PASS AA=-;AC=2;AF=0.59;AFR_AF=0.79;AMR_AF=0.59;AN=2;ASN_AF=0.40;AVGPOST=0.9582;ERATE=0.0119;EUR_AF=0.62;LDAF=0.5891;RSQ=0.9399;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.74,-0.09 +12 132403161 rs11609348 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9940;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +12 132626668 rs1133690 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.24;AMR_AF=0.68;AN=2;ASN_AF=0.77;AVGPOST=0.9905;ERATE=0.0018;EUR_AF=0.69;LDAF=0.6077;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 132633458 rs79736234 G A 100 PASS AA=g;AC=1;AF=0.45;AFR_AF=0.39;AMR_AF=0.57;AN=2;ASN_AF=0.20;AVGPOST=0.8619;ERATE=0.0512;EUR_AF=0.62;LDAF=0.4579;RSQ=0.7778;SNPSOURCE=EXOME;THETA=0.0113;VT=SNP GT:DS:GL 0|1:1.350:-3.06,-0.47,-0.18 +12 132635521 rs7397057 T C 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.51;AMR_AF=0.75;AN=2;ASN_AF=0.51;AVGPOST=0.9945;ERATE=0.0097;EUR_AF=0.65;LDAF=0.5985;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 132635989 rs11246947 A G 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.44;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9860;ERATE=0.0116;EUR_AF=0.27;LDAF=0.3365;RSQ=0.9781;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +12 132636400 rs11246948 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.30;AVGPOST=0.9875;ERATE=0.0005;EUR_AF=0.24;LDAF=0.2352;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-2.29,-0.00,-5.00 +12 132682481 rs12308155 T G 100 PASS AA=g;AC=2;AF=0.74;AFR_AF=0.83;AMR_AF=0.75;AN=2;ASN_AF=0.65;AVGPOST=0.9863;ERATE=0.0013;EUR_AF=0.74;LDAF=0.7344;RSQ=0.9728;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.28,-0.00 +12 132682484 rs12306514 A G 100 PASS AA=g;AC=2;AF=0.74;AFR_AF=0.82;AMR_AF=0.75;AN=2;ASN_AF=0.65;AVGPOST=0.9834;ERATE=0.0039;EUR_AF=0.74;LDAF=0.7333;RSQ=0.9664;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.42,-0.02 +12 132683690 rs4074046 G A 100 PASS AA=g;AC=1;AF=0.43;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.39;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4293;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 132683862 rs6598205 G A 100 PASS AA=g;AC=2;AF=0.73;AFR_AF=0.85;AMR_AF=0.69;AN=2;ASN_AF=0.66;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7307;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.08,-0.00 +12 132685826 rs11246988 T C 100 PASS AA=c;AC=1;AF=0.56;AFR_AF=0.63;AMR_AF=0.52;AN=2;ASN_AF=0.48;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5552;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 132685837 rs10794457 A G 100 PASS AA=g;AC=2;AF=0.78;AFR_AF=0.79;AMR_AF=0.80;AN=2;ASN_AF=0.70;AVGPOST=0.9956;ERATE=0.0004;EUR_AF=0.81;LDAF=0.7757;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.47,-0.00 +12 132688137 rs7486927 A G 100 PASS AA=g;AC=1;AF=0.56;AFR_AF=0.66;AMR_AF=0.52;AN=2;ASN_AF=0.48;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.58;LDAF=0.5632;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133196596 rs7964634 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.81;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9864;ERATE=0.0042;EUR_AF=0.56;LDAF=0.6990;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.36,-0.02 +12 133197018 rs6560891 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.81;AMR_AF=0.73;AN=2;ASN_AF=0.79;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7030;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133198021 rs4883632 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.61;AMR_AF=0.54;AN=2;ASN_AF=0.75;AVGPOST=0.9941;ERATE=0.0301;EUR_AF=0.46;LDAF=0.5863;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133198589 rs55716322 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.12;AMR_AF=0.14;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0604;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133201443 rs78686967 G C 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9883;ERATE=0.0079;EUR_AF=0.12;LDAF=0.1114;RSQ=0.9620;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133202215 rs5745075 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.36;AMR_AF=0.45;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4456;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133208886 rs5745023 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.58;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133208979 rs5745022 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.76;AMR_AF=0.72;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6919;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133210985 rs5745005 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.81;AMR_AF=0.72;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.56;LDAF=0.7034;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133212582 rs5744990 G A 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1353;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133214768 rs5744970 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.87;AMR_AF=0.73;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.56;LDAF=0.7175;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133218724 rs5744951 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.68;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5676;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133219831 rs5744944 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.74;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5827;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133219949 rs5744942 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133233705 rs5744889 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9797;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133234020 rs5744886 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0288;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133236000 rs5744857 C T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.74;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5832;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133238076 rs5744844 T C 100 PASS AA=t;AC=1;AF=0.56;AFR_AF=0.63;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5580;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133240782 rs4883592 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.74;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5832;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133250118 rs4883555 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.64;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5564;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133251939 rs5744761 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.12;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0622;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133252796 rs4077170 C G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.64;AMR_AF=0.55;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5577;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133277983 rs7958567 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0031;EUR_AF=0.96;LDAF=0.9786;RSQ=0.9832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133294371 rs117147264 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.13;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0335;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-0.06,-0.90,-5.00 +12 133294728 rs11147014 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.0041;AMR_AF=0.19;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.06;LDAF=0.1875;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133295353 rs12423651 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0020;EUR_AF=0.06;LDAF=0.1911;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +12 133304604 rs11147024 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.31;AMR_AF=0.37;AN=2;ASN_AF=0.50;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3127;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133311944 rs10747081 T C 100 PASS AA=c;AC=2;AF=0.68;AFR_AF=0.58;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6833;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133331459 rs7968520 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.22;AMR_AF=0.14;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0871;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133349893 rs3741484 A G 100 PASS AA=a;AC=1;AF=0.74;AFR_AF=0.73;AMR_AF=0.77;AN=2;ASN_AF=0.54;AVGPOST=0.9931;ERATE=0.0037;EUR_AF=0.90;LDAF=0.7448;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.14 +12 133353539 rs61951323 G A 100 PASS AA=g;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.14;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0814;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133353682 rs61951347 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133363376 rs7976379 G T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.82;AMR_AF=0.85;AN=2;ASN_AF=0.94;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8418;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133365920 rs11147076 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.44;AMR_AF=0.42;AN=2;ASN_AF=0.52;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.29;LDAF=0.4053;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +12 133367788 rs118137428 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0274;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133372395 rs4758905 A C 100 PASS AA=c;AC=2;AF=0.71;AFR_AF=0.56;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7090;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133378440 rs2291258 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.52;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.29;LDAF=0.4169;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133383923 rs10781653 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9749;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.71,-0.09 +12 133433173 rs2062163 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133433240 rs11147110 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.21;LDAF=0.1435;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +12 133634450 rs623100 A C 100 PASS AA=a;AC=2;AF=0.95;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.7850;ERATE=0.0129;EUR_AF=0.97;LDAF=0.8571;RSQ=0.2708;SNPSOURCE=EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:1.300:-0.48,-0.48,-0.48 +12 133682655 rs710945 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.82;AMR_AF=0.46;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5164;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133683261 rs905226 T C 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3917;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133683280 rs905225 A T 100 PASS AA=a;AC=2;AF=0.52;AFR_AF=0.82;AMR_AF=0.46;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5164;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133732624 rs3763151 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.46;AMR_AF=0.27;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2907;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +12 133778684 rs7963812 G A 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.45;AMR_AF=0.26;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2898;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +12 133778796 rs7975069 C T 100 PASS AA=T;AC=2;AF=0.29;AFR_AF=0.45;AMR_AF=0.27;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.35;LDAF=0.2907;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 193096 rs2280539 T C 100 PASS AA=.;AC=1;AF=0.47;AFR_AF=0.48;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9733;ERATE=0.0124;EUR_AF=0.52;LDAF=0.4684;RSQ=0.9002;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 193112 rs7951297 C T 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.19;AMR_AF=0.28;AN=2;ASN_AF=0.24;AVGPOST=0.9844;ERATE=0.0017;EUR_AF=0.32;LDAF=0.2627;RSQ=0.9563;SNPSOURCE=EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 193146 rs61736219 G A 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.22;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9856;ERATE=0.0200;EUR_AF=0.18;LDAF=0.1650;RSQ=0.9518;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 193194 rs2686896 T C 100 PASS AA=.;AC=1;AF=0.64;AFR_AF=0.54;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=0.9867;ERATE=0.0045;EUR_AF=0.61;LDAF=0.6426;RSQ=0.9531;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 193698 rs2294083 C T 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.39;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2364;RSQ=0.9886;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 193722 rs2294082 A G 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.39;AVGPOST=0.9941;ERATE=0.0050;EUR_AF=0.15;LDAF=0.2404;RSQ=0.9835;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 193863 rs2294081 T C 100 PASS AA=.;AC=1;AF=0.64;AFR_AF=0.56;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9928;ERATE=0.0005;EUR_AF=0.61;LDAF=0.6436;RSQ=0.9741;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.200:-5.00,-1.21,-0.03 +11 193865 rs2686894 T G 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.50;AVGPOST=0.9971;ERATE=0.0011;EUR_AF=0.50;LDAF=0.4995;RSQ=0.5612;SNPSOURCE=EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 193925 rs2294080 G A 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9963;ERATE=0.0025;EUR_AF=0.12;LDAF=0.1153;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 0|1:1.000:-0.21,-0.42,-5.00 +11 194441 rs61997072 C T 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.13;AVGPOST=0.9972;ERATE=0.0018;EUR_AF=0.12;LDAF=0.1156;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0125;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 197337 rs3802984 G A 100 PASS AA=.;AC=1;AF=0.38;AFR_AF=0.28;AMR_AF=0.34;AN=2;ASN_AF=0.70;AVGPOST=0.9933;ERATE=0.0005;EUR_AF=0.21;LDAF=0.3761;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +11 197557 rs7103852 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.57;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.91;LDAF=0.8523;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 206089 rs3782120 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1910;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 207275 rs6598075 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.21;AN=2;ASN_AF=0.18;AVGPOST=0.9929;ERATE=0.0009;EUR_AF=0.27;LDAF=0.2433;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.99,-0.00,-4.10 +11 219089 rs511744 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.49;AVGPOST=0.9925;ERATE=0.0022;EUR_AF=0.70;LDAF=0.6585;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 224048 rs570772 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.22;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=0.9946;ERATE=0.0085;EUR_AF=0.20;LDAF=0.1808;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 233067 rs11246020 C T 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1280;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 233212 rs11555236 C A 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1285;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 233298 rs12365010 T G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1276;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 236343 rs7118852 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9835;ERATE=0.0014;EUR_AF=0.99;LDAF=0.9885;RSQ=0.4285;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +11 237087 rs1045288 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=0.9855;ERATE=0.0031;EUR_AF=0.73;LDAF=0.7941;RSQ=0.9669;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244106 rs10902112 A G 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244108 rs7107362 A G 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244115 rs7128044 G A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244129 rs7116130 C T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9986;ERATE=0.0024;EUR_AF=0.73;LDAF=0.8031;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244141 rs7128029 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9993;ERATE=0.0028;EUR_AF=0.73;LDAF=0.8036;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244167 rs1128320 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244171 rs1128321 T C 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244197 rs1128322 T C 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 244414 rs2272565 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8062;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 250877 rs12793187 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.16;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0964;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 279798 rs4758626 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.35;AN=2;ASN_AF=0.05;AVGPOST=0.9926;ERATE=0.0008;EUR_AF=0.40;LDAF=0.2595;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.08 +11 280221 rs6421985 A C 100 PASS AA=a;AC=2;AF=0.72;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.26;AVGPOST=0.9742;ERATE=0.0012;EUR_AF=0.88;LDAF=0.7157;RSQ=0.9628;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +11 280673 rs12807092 C T 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.25;AMR_AF=0.73;AN=2;ASN_AF=0.24;AVGPOST=0.9671;ERATE=0.0010;EUR_AF=0.81;LDAF=0.5175;RSQ=0.9590;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.50,-0.01 +11 280816 rs56159585 A T 100 PASS AA=a;AC=2;AF=0.65;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.25;AVGPOST=0.9716;ERATE=0.0004;EUR_AF=0.81;LDAF=0.6485;RSQ=0.9645;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 280817 rs7482279 T C 100 PASS AA=t;AC=2;AF=0.65;AFR_AF=0.76;AMR_AF=0.81;AN=2;ASN_AF=0.25;AVGPOST=0.9719;ERATE=0.0004;EUR_AF=0.81;LDAF=0.6486;RSQ=0.9657;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 284257 rs11246050 G A 100 PASS AA=A;AC=2;AF=0.13;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=0.9947;ERATE=0.0246;EUR_AF=0.16;LDAF=0.1338;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0092;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 284538 rs6598047 T C 100 PASS AA=t;AC=2;AF=0.59;AFR_AF=0.58;AMR_AF=0.66;AN=2;ASN_AF=0.32;AVGPOST=0.9819;ERATE=0.0570;EUR_AF=0.77;LDAF=0.5891;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0270;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 290816 rs10902120 A G 100 PASS AA=a;AC=2;AF=0.65;AFR_AF=0.71;AMR_AF=0.71;AN=2;ASN_AF=0.44;AVGPOST=0.9978;ERATE=0.0016;EUR_AF=0.75;LDAF=0.6532;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 299411 rs57285449 C G 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.66;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=0.9415;ERATE=0.0869;EUR_AF=0.32;LDAF=0.4885;RSQ=0.9087;SNPSOURCE=LOWCOV,EXOME;THETA=0.0098;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 308178 rs1058873 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.43;AMR_AF=0.37;AN=2;ASN_AF=0.69;AVGPOST=0.9940;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4272;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 308180 rs10398 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.38;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=0.9943;ERATE=0.0007;EUR_AF=0.18;LDAF=0.3690;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 308290 rs1058900 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.94;AMR_AF=0.72;AN=2;ASN_AF=0.99;AVGPOST=0.9734;ERATE=0.0007;EUR_AF=0.55;LDAF=0.7769;RSQ=0.9574;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 308426 rs1058964 G C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.91;AMR_AF=0.70;AN=2;ASN_AF=0.98;AVGPOST=0.9676;ERATE=0.0014;EUR_AF=0.48;LDAF=0.7386;RSQ=0.9539;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +11 309127 rs1059091 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.58;AMR_AF=0.44;AN=2;ASN_AF=0.69;AVGPOST=0.9935;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5021;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 372157 rs34063493 C T 100 PASS AA=c;AC=2;AF=0.37;AFR_AF=0.45;AMR_AF=0.33;AN=2;ASN_AF=0.43;AVGPOST=0.9943;ERATE=0.0032;EUR_AF=0.30;LDAF=0.3743;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-0.87,-0.39,-0.34 +11 372700 rs35475866 G C 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.31;AMR_AF=0.32;AN=2;ASN_AF=0.43;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3427;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.98,-0.00 +11 379598 rs1134699 A G 100 PASS AA=g;AC=1;AF=0.52;AFR_AF=0.70;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=0.9853;ERATE=0.0009;EUR_AF=0.41;LDAF=0.5126;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-3.62,-0.00,-5.00 +11 396701 rs11246147 C T 100 PASS AA=c;AC=2;AF=0.43;AFR_AF=0.26;AMR_AF=0.46;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.53;LDAF=0.4282;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.90,-0.01 +11 396915 rs12419281 C T 100 PASS AA=c;AC=2;AF=0.43;AFR_AF=0.26;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4258;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +11 397706 rs9795298 T C 100 PASS AA=c;AC=2;AF=0.85;AFR_AF=0.97;AMR_AF=0.74;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8496;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.86,-0.01 +11 400109 rs8858 A G 100 PASS AA=g;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9962;ERATE=0.0005;EUR_AF=0.75;LDAF=0.8638;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.28,-0.00 +11 403046 rs76360685 C T 100 PASS AA=c;AC=2;AF=0.44;AFR_AF=0.32;AMR_AF=0.56;AN=2;ASN_AF=0.35;AVGPOST=0.9560;ERATE=0.0017;EUR_AF=0.52;LDAF=0.4325;RSQ=0.9304;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.900:-3.14,-0.48,-0.18 +11 403939 rs7479832 A G 100 PASS AA=g;AC=2;AF=0.90;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.78;LDAF=0.8994;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +11 403980 rs11748 G A 100 PASS AA=g;AC=2;AF=0.49;AFR_AF=0.50;AMR_AF=0.58;AN=2;ASN_AF=0.36;AVGPOST=0.9956;ERATE=0.0009;EUR_AF=0.55;LDAF=0.4948;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 404317 rs1134578 C T 100 PASS AA=c;AC=2;AF=0.44;AFR_AF=0.28;AMR_AF=0.56;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4378;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 406043 rs7947 G A 100 PASS AA=g;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8849;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +11 406473 rs3087588 A C 100 PASS AA=c;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8865;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 406483 rs3210908 T C 100 PASS AA=c;AC=2;AF=0.90;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8989;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 428385 rs10794323 A G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.99;AMR_AF=0.74;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8952;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 428489 rs10794324 T C 100 PASS AA=C;AC=1;AF=0.89;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9964;ERATE=0.0006;EUR_AF=0.81;LDAF=0.8878;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 429659 rs7111432 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.36;AVGPOST=0.9907;ERATE=0.0017;EUR_AF=0.62;LDAF=0.5190;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 431834 rs55914928 A G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.99;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.84;LDAF=0.8989;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 433387 rs7395065 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 433867 rs12575508 G A 100 PASS AA=g;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9972;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2011;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.12,-0.00,-4.22 +11 433904 rs137970750 C T 100 PASS AA=c;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0011;RSQ=0.8780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.61,-0.12 +11 433965 rs7396778 G A 100 PASS AA=g;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9974;ERATE=0.0011;EUR_AF=0.20;LDAF=0.2012;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.94,-0.01,-3.74 +11 433995 rs7396776 G A 100 PASS AA=g;AC=1;AF=0.53;AFR_AF=0.58;AMR_AF=0.52;AN=2;ASN_AF=0.36;AVGPOST=0.9927;ERATE=0.0020;EUR_AF=0.64;LDAF=0.5328;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-2.19,-0.01,-1.75 +11 460303 rs11821341 T C 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.48;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3290;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 487101 rs61876332 C T 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.21;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0723;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 489386 rs67492572 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.31;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2171;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 489537 rs61876336 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.21;AN=2;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0725;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 494942 rs7983 G C 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9944;ERATE=0.0027;EUR_AF=0.31;LDAF=0.3334;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.28,-0.02 +11 495103 rs11246165 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.58;AMR_AF=0.48;AN=2;ASN_AF=0.34;AVGPOST=0.9771;ERATE=0.0044;EUR_AF=0.33;LDAF=0.4110;RSQ=0.9652;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.850:-4.70,-0.02,-1.40 +11 499059 rs17584 C T 100 PASS AA=C;AC=2;AF=0.22;AFR_AF=0.30;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2185;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 502013 rs7930593 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.20;AVGPOST=0.9973;ERATE=0.0015;EUR_AF=0.35;LDAF=0.3220;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.88,-0.01 +11 549959 rs7942030 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8010;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 550028 rs11246180 C G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.76;AMR_AF=0.89;AN=2;ASN_AF=0.91;AVGPOST=0.9922;ERATE=0.0015;EUR_AF=0.91;LDAF=0.8697;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 551753 rs4963198 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.41;AMR_AF=0.58;AN=2;ASN_AF=0.83;AVGPOST=0.9813;ERATE=0.0064;EUR_AF=0.67;LDAF=0.6340;RSQ=0.9731;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +11 552547 rs3740652 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.77;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=0.9969;ERATE=0.0005;EUR_AF=0.94;LDAF=0.9013;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +11 554166 rs10902170 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.70;AMR_AF=0.84;AN=2;ASN_AF=0.85;AVGPOST=0.9842;ERATE=0.0026;EUR_AF=0.81;LDAF=0.7996;RSQ=0.9658;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 554214 rs10902171 G C 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.70;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8108;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 554299 rs10902172 C G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.77;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8968;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 556121 rs936467 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9848;ERATE=0.0015;EUR_AF=0.99;LDAF=0.9534;RSQ=0.8802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +11 556457 rs28407128 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.77;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9960;ERATE=0.0006;EUR_AF=0.93;LDAF=0.8839;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.05,-0.04 +11 556521 rs28406183 C G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.66;AMR_AF=0.93;AN=2;ASN_AF=0.90;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.94;LDAF=0.8656;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.57,-0.00 +11 556857 rs7938269 G C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.78;AMR_AF=0.94;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8939;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.80,-0.01 +11 557989 rs7129811 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.69;AVGPOST=0.9966;ERATE=0.0006;EUR_AF=0.58;LDAF=0.4909;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 558884 rs2061586 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.54;AMR_AF=0.84;AN=2;ASN_AF=0.86;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7677;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 559016 rs3943356 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.54;AMR_AF=0.84;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.81;LDAF=0.7687;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 610277 rs11246212 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.76;AMR_AF=0.83;AN=2;ASN_AF=0.76;AVGPOST=0.9938;ERATE=0.0012;EUR_AF=0.87;LDAF=0.8085;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.200:-0.48,-0.48,-0.48 +11 614864 rs1061501 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.74;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.87;LDAF=0.8216;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.46,-0.02 +11 617537 rs2740380 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.18;AMR_AF=0.47;AN=2;ASN_AF=0.72;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.56;LDAF=0.5007;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.19,-0.00 +11 617967 rs2740379 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9807;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 618998 rs2740375 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.25;AMR_AF=0.47;AN=2;ASN_AF=0.71;AVGPOST=0.9890;ERATE=0.0105;EUR_AF=0.56;LDAF=0.5121;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +11 619789 rs2246614 T G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.42;AMR_AF=0.54;AN=2;ASN_AF=0.73;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6037;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.75,-0.01 +11 654091 rs7112962 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.15;AMR_AF=0.37;AN=2;ASN_AF=0.58;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4076;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 674499 rs6597996 G A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5321;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 688091 rs12277188 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.19;AMR_AF=0.39;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4265;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 691636 rs11246268 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4031;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +11 700247 rs7482162 A C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.69;AMR_AF=0.62;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7476;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 720197 rs3087546 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.53;AMR_AF=0.65;AN=2;ASN_AF=0.25;AVGPOST=0.9859;ERATE=0.0056;EUR_AF=0.54;LDAF=0.4773;RSQ=0.9803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 721570 rs7635 C T 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.17;AMR_AF=0.53;AN=2;ASN_AF=0.20;AVGPOST=0.9946;ERATE=0.0006;EUR_AF=0.42;LDAF=0.3264;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 726178 rs28498399 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9992;RSQ=0.0809;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.43,-0.02 +11 771034 rs7930569 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.32;AMR_AF=0.58;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4913;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 772490 rs12224894 G A 100 PASS AA=-;AC=1;AF=0.38;AFR_AF=0.17;AMR_AF=0.57;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0047;EUR_AF=0.44;LDAF=0.3786;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 800485 rs7121646 T A 100 PASS AA=t;AC=1;AF=0.37;AFR_AF=0.19;AMR_AF=0.56;AN=2;ASN_AF=0.31;AVGPOST=0.9857;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3758;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 800486 rs7117921 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.19;AMR_AF=0.56;AN=2;ASN_AF=0.30;AVGPOST=0.9853;ERATE=0.0006;EUR_AF=0.45;LDAF=0.3741;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 800563 rs113725585 C T 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9259;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 802115 rs7479101 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.71;AMR_AF=0.72;AN=2;ASN_AF=0.66;AVGPOST=0.9952;ERATE=0.0004;EUR_AF=0.63;LDAF=0.6689;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-0.28,-0.32,-4.22 +11 802125 rs28498421 T C 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9591;RSQ=0.9635;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +11 802379 rs10902221 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.30;AMR_AF=0.61;AN=2;ASN_AF=0.32;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4301;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 802902 rs28360884 T G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.71;AMR_AF=0.72;AN=2;ASN_AF=0.66;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6760;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.87 +11 804212 rs7104785 C A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.30;AMR_AF=0.61;AN=2;ASN_AF=0.32;AVGPOST=0.9956;ERATE=0.0012;EUR_AF=0.50;LDAF=0.4277;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 822622 rs7942159 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.65;AN=2;ASN_AF=0.33;AVGPOST=0.9969;ERATE=0.0013;EUR_AF=0.57;LDAF=0.5067;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 823809 rs1135628 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.36;AVGPOST=0.9942;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2488;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.11,-0.04,-5.00 +11 824789 rs1138693 T C 100 PASS AA=-;AC=1;AF=0.70;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9492;ERATE=0.0062;EUR_AF=0.70;LDAF=0.6911;RSQ=0.9073;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-4.10 +11 828784 rs28507876 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.91;AMR_AF=0.82;AN=2;ASN_AF=0.93;AVGPOST=0.9940;ERATE=0.0020;EUR_AF=0.76;LDAF=0.8459;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 828916 rs7126805 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.49;AMR_AF=0.76;AN=2;ASN_AF=0.72;AVGPOST=0.9846;ERATE=0.0025;EUR_AF=0.70;LDAF=0.6650;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 829539 rs28558789 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.57;AMR_AF=0.77;AN=2;ASN_AF=0.92;AVGPOST=0.9912;ERATE=0.0030;EUR_AF=0.67;LDAF=0.7294;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-1.81,-0.01,-5.00 +11 830670 rs4075289 G T 100 PASS AA=g;AC=1;AF=0.72;AFR_AF=0.53;AMR_AF=0.77;AN=2;ASN_AF=0.92;AVGPOST=0.9885;ERATE=0.0014;EUR_AF=0.67;LDAF=0.7221;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-2.03,-0.00,-4.10 +11 836023 rs28475448 C T 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9650;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +11 836227 rs28434354 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9665;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 837582 rs1130663 G A 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.52;AMR_AF=0.78;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7134;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 838110 rs5030780 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.52;AMR_AF=0.78;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7134;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 840363 rs6591 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.59;AN=2;ASN_AF=0.23;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4233;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 840477 rs4895 A G 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.52;AMR_AF=0.78;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.67;LDAF=0.7133;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 842543 rs28372895 C G 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.51;AMR_AF=0.74;AN=2;ASN_AF=0.87;AVGPOST=0.9534;ERATE=0.0082;EUR_AF=0.63;LDAF=0.6736;RSQ=0.9244;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 862652 rs28505621 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9940;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 865503 rs28581489 G A 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9782;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 866044 rs28457111 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9939;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 870095 rs113580509 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.09;AVGPOST=0.9960;ERATE=0.0053;EUR_AF=0.10;LDAF=0.0794;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 870446 rs6682 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.73;AVGPOST=0.9969;ERATE=0.0030;EUR_AF=0.49;LDAF=0.5238;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 870467 rs1127800 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.07;AN=2;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0465;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 884193 rs61869682 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0780;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 900894 rs28454252 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0018;EUR_AF=1.00;LDAF=0.9896;RSQ=0.9668;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.76,-0.00 +11 900929 rs10794339 C G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.73;AMR_AF=0.53;AN=2;ASN_AF=0.72;AVGPOST=0.9968;ERATE=0.0139;EUR_AF=0.53;LDAF=0.6249;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 902939 rs12799186 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.20;AMR_AF=0.54;AN=2;ASN_AF=0.28;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3872;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 903070 rs28380110 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9939;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 972270 rs7933889 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.43;AMR_AF=0.65;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4743;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 985547 rs10794358 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.36;AMR_AF=0.69;AN=2;ASN_AF=0.31;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5012;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 992691 rs10902263 G T 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.34;AMR_AF=0.69;AN=2;ASN_AF=0.31;AVGPOST=0.9982;ERATE=0.0016;EUR_AF=0.65;LDAF=0.4994;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 993745 rs7104956 C G 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=0.9646;ERATE=0.0404;EUR_AF=0.20;LDAF=0.1767;RSQ=0.9101;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-3.74,-0.00,-5.00 +11 1009307 rs11246379 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0613;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1016869 rs35469308 A T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.51;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9979;ERATE=0.0057;EUR_AF=0.50;LDAF=0.5061;RSQ=0.8760;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.800:-5.00,-2.53,-0.00 +11 1016928 rs34053383 C G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.50;AN=2;ASN_AF=0.51;AVGPOST=0.9920;ERATE=0.0086;EUR_AF=0.51;LDAF=0.5101;RSQ=0.7489;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1017029 rs35621365 T G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.50;LDAF=0.5005;RSQ=0.6351;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1017220 . T C 100 PASS AA=t;AC=1;AF=0.44;AFR_AF=0.42;AMR_AF=0.45;AN=2;ASN_AF=0.44;AVGPOST=0.9938;ERATE=0.0022;EUR_AF=0.45;LDAF=0.4424;RSQ=0.9605;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1017231 rs35840539 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.43;AMR_AF=0.45;AN=2;ASN_AF=0.45;AVGPOST=0.9905;ERATE=0.0048;EUR_AF=0.46;LDAF=0.4473;RSQ=0.9340;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1018025 rs10751677 C A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=0.9837;ERATE=0.0115;EUR_AF=0.39;LDAF=0.4037;RSQ=0.9291;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1018031 rs10751678 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=0.9870;ERATE=0.0115;EUR_AF=0.40;LDAF=0.4050;RSQ=0.9410;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1018169 rs77647814 C G 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.40;AVGPOST=0.9770;ERATE=0.0628;EUR_AF=0.34;LDAF=0.3751;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1018295 rs73403297 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9972;ERATE=0.0009;EUR_AF=0.50;LDAF=0.4994;RSQ=0.4626;SNPSOURCE=EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1018374 rs7396383 T A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.63;AVGPOST=0.9835;ERATE=0.0128;EUR_AF=0.79;LDAF=0.7258;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1018436 rs12802800 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.23;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9966;ERATE=0.0039;EUR_AF=0.08;LDAF=0.0898;RSQ=0.9827;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1019375 rs9704308 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.89;AN=2;ASN_AF=0.85;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.93;LDAF=0.9133;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 1025987 rs12805673 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.34;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1213;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1026084 rs12801568 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.15;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0740;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1317004 rs145957069 C T 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0029;RSQ=0.9194;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1411501 rs112066837 C T 100 PASS AA=c;AC=2;AF=0.45;AFR_AF=0.34;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9650;ERATE=0.0016;EUR_AF=0.60;LDAF=0.4446;RSQ=0.9496;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.14,-0.48,-0.18 +11 1472050 rs61869028 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.36;AN=2;ASN_AF=0.01;AVGPOST=0.9546;ERATE=0.0195;EUR_AF=0.53;LDAF=0.2743;RSQ=0.9296;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1475706 rs55744154 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.0017;AVGPOST=0.9930;ERATE=0.0007;EUR_AF=0.17;LDAF=0.1043;RSQ=0.9747;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1579018 rs113161544 T C 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.14;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0645;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1775352 rs147278302 C T 100 PASS AA=c;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0054;RSQ=0.9636;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1855854 rs2063551 G C 100 PASS AA=c;AC=2;AF=0.73;AFR_AF=0.69;AMR_AF=0.79;AN=2;ASN_AF=0.65;AVGPOST=0.9911;ERATE=0.0113;EUR_AF=0.79;LDAF=0.7316;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.35,-0.00 +11 1857112 rs907606 C A 100 PASS AA=c;AC=2;AF=0.30;AFR_AF=0.12;AMR_AF=0.26;AN=2;ASN_AF=0.29;AVGPOST=0.9952;ERATE=0.0005;EUR_AF=0.44;LDAF=0.3026;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 1857173 rs564271 T C 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9795;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 1857762 rs3741230 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0924;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1858572 rs2292474 C T 100 PASS AA=t;AC=1;AF=0.39;AFR_AF=0.17;AMR_AF=0.45;AN=2;ASN_AF=0.40;AVGPOST=0.9850;ERATE=0.0028;EUR_AF=0.50;LDAF=0.3938;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 1861760 rs907610 T C 100 PASS AA=c;AC=1;AF=0.85;AFR_AF=0.63;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9918;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8482;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1861912 rs2271441 G A 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9910;ERATE=0.0008;EUR_AF=0.20;LDAF=0.1351;RSQ=0.9714;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1901467 rs2271439 A C 100 PASS AA=.;AC=2;AF=0.70;AFR_AF=0.74;AMR_AF=0.79;AN=2;ASN_AF=0.46;AVGPOST=0.9966;ERATE=0.0077;EUR_AF=0.80;LDAF=0.6973;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 1902635 rs536462 G T 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.78;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9291;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +11 1902768 rs621679 G A 100 PASS AA=.;AC=1;AF=0.42;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.57;AVGPOST=0.9945;ERATE=0.0011;EUR_AF=0.37;LDAF=0.4184;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.21,-0.16,-0.50 +11 1905292 rs661348 T C 100 PASS AA=.;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.54;AN=2;ASN_AF=0.59;AVGPOST=0.9986;ERATE=0.0075;EUR_AF=0.42;LDAF=0.4291;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 1907940 rs11041676 T C 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.39;AMR_AF=0.58;AN=2;ASN_AF=0.82;AVGPOST=0.9981;ERATE=0.0007;EUR_AF=0.48;LDAF=0.5625;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-1.50,-0.01,-5.00 +11 1950302 rs629990 A G 100 PASS AA=.;AC=1;AF=0.84;AFR_AF=0.80;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.80;LDAF=0.8432;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2169014 rs10770125 A G 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.13;AMR_AF=0.55;AN=2;ASN_AF=0.40;AVGPOST=0.9961;ERATE=0.0008;EUR_AF=0.46;LDAF=0.3858;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.01 +11 2181060 rs3842753 T G 100 PASS AA=t;AC=2;AF=0.66;AFR_AF=0.21;AMR_AF=0.71;AN=2;ASN_AF=0.95;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.72;LDAF=0.6635;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +11 2182004 rs5506 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.74;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9391;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 2182224 rs689 A T 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.21;AMR_AF=0.71;AN=2;ASN_AF=0.95;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6644;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +11 2187855 rs12419447 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.04;AVGPOST=0.9896;ERATE=0.0005;EUR_AF=0.38;LDAF=0.2128;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.350:-5.00,-1.84,-0.01 +11 2188238 rs6357 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.04;AVGPOST=0.9949;ERATE=0.0004;EUR_AF=0.32;LDAF=0.1783;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.200:-5.00,-0.70,-0.10 +11 2189185 rs4074905 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.39;AMR_AF=0.73;AN=2;ASN_AF=0.96;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6910;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 2190951 rs6356 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.77;AVGPOST=0.9978;ERATE=0.0008;EUR_AF=0.38;LDAF=0.4187;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 2324041 rs2074022 A G 100 PASS AA=a;AC=2;AF=0.79;AFR_AF=0.97;AMR_AF=0.85;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7888;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +11 2329995 rs11554947 C T 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.61;AMR_AF=0.73;AN=2;ASN_AF=0.24;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.91;LDAF=0.6369;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +11 2330077 rs2234297 C G 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.56;AMR_AF=0.73;AN=2;ASN_AF=0.25;AVGPOST=0.9981;ERATE=0.0009;EUR_AF=0.91;LDAF=0.6265;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.60,-0.01 +11 2334957 rs2234302 G A 100 PASS AA=G;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0010;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 2417893 rs14077 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.27;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0736;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2417935 rs2229751 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.37;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0978;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2417971 rs12293244 C T 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.27;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0744;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2424647 rs2234281 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.25;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0701;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2424684 rs2234283 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0013;EUR_AF=0.99;LDAF=0.9941;RSQ=0.8891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +11 2427211 rs7938864 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.31;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=0.9991;ERATE=0.0047;EUR_AF=0.07;LDAF=0.1175;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2427291 rs800342 A C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.87;AMR_AF=0.76;AN=2;ASN_AF=0.53;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.88;LDAF=0.7680;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 2427364 rs61873460 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.37;AMR_AF=0.52;AN=2;ASN_AF=0.16;AVGPOST=0.9919;ERATE=0.0043;EUR_AF=0.66;LDAF=0.4375;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 2428341 rs11022676 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.16;AVGPOST=0.9715;ERATE=0.0126;EUR_AF=0.19;LDAF=0.1599;RSQ=0.9244;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 2432820 rs2651822 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.98;AMR_AF=0.89;AN=2;ASN_AF=0.96;AVGPOST=0.9932;ERATE=0.0004;EUR_AF=0.76;LDAF=0.8814;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 2439542 rs3986599 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.96;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.64;LDAF=0.8096;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +11 2439621 rs2074236 A T 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.59;AMR_AF=0.53;AN=2;ASN_AF=0.67;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5212;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +11 2439767 rs886277 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.62;AMR_AF=0.53;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5310;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +11 2441470 rs200126412 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +11 2797237 rs1057128 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.29;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.18;LDAF=0.2001;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2797320 rs163150 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.68;AMR_AF=0.55;AN=2;ASN_AF=0.71;AVGPOST=0.9905;ERATE=0.0026;EUR_AF=0.69;LDAF=0.6647;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.25 +11 2924610 rs1048047 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.44;AMR_AF=0.62;AN=2;ASN_AF=0.74;AVGPOST=0.9984;ERATE=0.0013;EUR_AF=0.61;LDAF=0.6074;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2929552 rs429886 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.66;AMR_AF=0.74;AN=2;ASN_AF=0.77;AVGPOST=0.9988;ERATE=0.0014;EUR_AF=0.74;LDAF=0.7317;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2930395 rs10832891 G C 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.39;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=0.9640;ERATE=0.0039;EUR_AF=0.39;LDAF=0.2727;RSQ=0.9374;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.09 +11 2930440 rs78838117 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=0.9875;ERATE=0.0008;EUR_AF=0.0040;LDAF=0.0193;RSQ=0.7300;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.650:-2.11,-0.00,-3.62 +11 2939297 rs139881375 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0005;LDAF=0.0116;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 2940492 rs450244 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.90;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9154;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 2950558 rs13390 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9945;ERATE=0.0009;EUR_AF=0.18;LDAF=0.0946;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 2979798 rs7940694 G T 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=0.91;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.80;LDAF=0.8723;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 2999507 rs3814964 G T 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.14;AMR_AF=0.47;AN=2;ASN_AF=0.70;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3947;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 3026692 rs4758458 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.96;AMR_AF=0.86;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8627;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 3026712 rs7931504 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.34;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=0.9980;ERATE=0.0031;EUR_AF=0.40;LDAF=0.3207;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 3028140 rs729662 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.04;AMR_AF=0.46;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3574;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 3050210 rs434114 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.52;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4090;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 3109403 rs2289999 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.82;AVGPOST=0.9924;ERATE=0.0006;EUR_AF=0.69;LDAF=0.7339;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 3109408 rs2289998 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.71;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9801;ERATE=0.0066;EUR_AF=0.68;LDAF=0.7171;RSQ=0.9682;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 3109426 rs10160757 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.88;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8412;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 3111782 rs2412134 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.14;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1007;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 3121521 rs17263699 C T 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1102;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 3124435 rs1542188 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1197;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-1.83,-0.01,-3.52 +11 3129027 rs3741350 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.77;AMR_AF=0.35;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.44;LDAF=0.3945;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 3249552 rs4391795 C T 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.40;AVGPOST=0.9387;ERATE=0.0059;EUR_AF=0.46;LDAF=0.3252;RSQ=0.9015;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +11 3249829 rs11026040 G A 100 PASS AA=g;AC=1;AF=0.18;AFR_AF=0.24;AMR_AF=0.28;AN=2;ASN_AF=0.10;AVGPOST=0.9907;ERATE=0.0020;EUR_AF=0.14;LDAF=0.1775;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 3249984 rs12295710 C T 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.51;AVGPOST=0.9855;ERATE=0.0004;EUR_AF=0.50;LDAF=0.3785;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 3381843 rs2157763 A G 100 PASS AA=a;AC=2;AF=0.63;AFR_AF=0.55;AMR_AF=0.70;AN=2;ASN_AF=0.55;AVGPOST=0.9985;ERATE=0.0011;EUR_AF=0.70;LDAF=0.6270;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 3392972 rs2269732 G A 100 PASS AA=a;AC=2;AF=0.67;AFR_AF=0.60;AMR_AF=0.76;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6742;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 3660295 rs1996208 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.31;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9948;ERATE=0.0008;EUR_AF=0.08;LDAF=0.1927;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-1.22,-0.03,-5.00 +11 3661140 rs4910876 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 3681519 rs2280134 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.43;AMR_AF=0.75;AN=2;ASN_AF=0.33;AVGPOST=0.9977;ERATE=0.0018;EUR_AF=0.69;LDAF=0.5503;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 3704704 rs7950171 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.21;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1627;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 3746465 rs276901 C G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.52;AMR_AF=0.19;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3112;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4103524 rs2304891 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.10;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4297;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4104087 rs10767828 T C 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.16;AMR_AF=0.78;AN=2;ASN_AF=0.79;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.88;LDAF=0.6771;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4104745 rs2289570 C G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.47;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8240;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 4123345 rs1348310 C G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.77;AMR_AF=0.84;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8409;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4133317 rs56336381 C A 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.78;AMR_AF=0.84;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8420;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4141132 rs183484 C A 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.04;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3794;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4159457 rs9937 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4013;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4159466 rs1042858 G A 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.78;AMR_AF=0.84;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8418;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4409511 rs12805578 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.79;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.80;LDAF=0.8152;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 4409599 rs5030770 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0069;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4471139 rs150771960 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4510285 rs96489 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.55;AMR_AF=0.27;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3542;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4510587 rs331510 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.25;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.22;LDAF=0.1992;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +11 4566377 rs2657168 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.31;AMR_AF=0.26;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3067;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4566711 rs2709182 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.53;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4273;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4567335 rs2657167 C G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.58;AMR_AF=0.30;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3921;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4594739 rs919519 C T 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.62;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8633;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 4608542 rs1847632 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.24;AMR_AF=0.39;AN=2;ASN_AF=0.58;AVGPOST=0.9947;ERATE=0.0020;EUR_AF=0.35;LDAF=0.3899;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +11 4621485 rs2231978 C G 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.89;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.95;LDAF=0.8607;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 4661285 rs905871 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1449;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4674575 rs3817098 G A 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.21;AMR_AF=0.43;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3053;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 4703165 rs1123991 C A 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.54;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7580;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4903811 rs149770343 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4928621 rs11034596 G A 100 PASS AA=g;AC=2;AF=0.22;AFR_AF=0.09;AMR_AF=0.13;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.09;LDAF=0.2167;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 4929061 rs10500627 C G 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2134;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 4945196 rs1378739 T G 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.76;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6599;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4945229 rs10836954 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0855;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4967468 rs28698374 G A 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.78;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8495;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0104;VT=SNP GT:DS:GL 1|0:1.000:-0.18,-0.46,-5.00 +11 4967532 rs2595988 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=0.9939;ERATE=0.0036;EUR_AF=0.15;LDAF=0.0971;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +11 4967831 rs2595987 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.05;AVGPOST=0.9612;ERATE=0.0156;EUR_AF=0.15;LDAF=0.1036;RSQ=0.8674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +11 4968198 rs3845246 C A 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.78;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=0.9902;ERATE=0.0015;EUR_AF=0.80;LDAF=0.8377;RSQ=0.9777;SNPSOURCE=EXOME;THETA=0.0096;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4976086 rs2570572 C T 100 PASS AA=-;AC=1;AF=0.77;AFR_AF=0.69;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=0.9523;ERATE=0.0028;EUR_AF=0.71;LDAF=0.7548;RSQ=0.9293;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +11 4976241 rs2570571 C G 100 PASS AA=-;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=0.9370;ERATE=0.0104;EUR_AF=0.30;LDAF=0.2163;RSQ=0.8942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0164;VT=SNP GT:DS:GL 0|1:1.000:-3.04,-0.00,-5.00 +11 4976554 rs2595986 A G 100 PASS AA=-;AC=1;AF=0.59;AFR_AF=0.38;AMR_AF=0.67;AN=2;ASN_AF=0.81;AVGPOST=0.9112;ERATE=0.0422;EUR_AF=0.53;LDAF=0.5735;RSQ=0.8958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 4976788 rs35318834 C A 100 PASS AA=-;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.05;AVGPOST=0.9937;ERATE=0.0006;EUR_AF=0.09;LDAF=0.0542;RSQ=0.9621;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 4976811 rs28482315 C A 100 PASS AA=-;AC=1;AF=0.84;AFR_AF=0.77;AMR_AF=0.89;AN=2;ASN_AF=0.92;AVGPOST=0.9915;ERATE=0.0005;EUR_AF=0.81;LDAF=0.8414;RSQ=0.9794;SNPSOURCE=EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5010905 rs2499953 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.34;AMR_AF=0.14;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1820;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5020416 rs2445290 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.85;AMR_AF=0.81;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.87;LDAF=0.8020;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5079946 rs2445332 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5080844 rs16909440 T C 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.21;AMR_AF=0.39;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3217;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5153261 rs2472530 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2216;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5172786 rs10768611 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9717;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5221825 rs11036212 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.48;AMR_AF=0.68;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6257;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5247791 rs10768683 C G 100 PASS AA=g;AC=1;AF=0.74;AFR_AF=0.89;AMR_AF=0.75;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7422;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5248243 rs713040 A G 100 PASS AA=g;AC=1;AF=0.74;AFR_AF=0.89;AMR_AF=0.75;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7389;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5255242 rs61746501 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.0040;LDAF=0.0096;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5269584 . T A 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.92;AMR_AF=0.83;AN=2;ASN_AF=0.88;AVGPOST=0.9943;ERATE=0.0057;EUR_AF=0.77;LDAF=0.8430;RSQ=0.9857;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5289670 rs59733060 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.18;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5322520 rs12283334 G A 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1915;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5323071 rs7118113 C T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.42;AMR_AF=0.79;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.68;LDAF=0.6878;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5344552 rs7934105 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.79;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7550;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5344561 rs7933257 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.79;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7550;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5344681 rs11036815 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2655;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5344772 rs10742622 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.79;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7550;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5344847 rs10768793 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.79;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7550;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5344902 rs7937237 C G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.79;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7550;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5345128 rs10837814 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.30;AMR_AF=0.50;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4511;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5345170 rs7952293 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.79;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7550;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5345486 rs4910750 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.79;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.90;LDAF=0.7550;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5364742 rs11036913 C T 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.09;AMR_AF=0.41;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.42;LDAF=0.3030;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5372863 rs10837882 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.10;LDAF=0.1373;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5373114 rs5006888 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.59;AMR_AF=0.60;AN=2;ASN_AF=0.55;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5801;RSQ=0.9991;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5373646 rs5024041 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.58;AMR_AF=0.60;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5791;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5373713 rs12802177 A T 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2588;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5443442 rs2736590 G C 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.37;LDAF=0.4621;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5443700 rs2736588 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4420;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5443739 rs2736587 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5443867 rs10838092 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5443887 rs10838093 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5443893 rs10838094 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5443963 rs10838095 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4416;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5444061 rs2736586 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5444136 rs2647574 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4419;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5444353 rs2647573 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.68;AVGPOST=0.9964;ERATE=0.0007;EUR_AF=0.37;LDAF=0.4386;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5461991 rs1498486 C A 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.43;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3556;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5474838 rs2030094 G T 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.37;AMR_AF=0.45;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4072;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5475170 rs16931292 G C 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.13;LDAF=0.1254;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5475506 rs11037502 G A 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1417;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5510284 rs417425 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.97;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9387;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5510341 rs404280 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.34;AMR_AF=0.58;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5393;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5510497 rs2467219 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5510626 rs444878 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5510928 rs392296 G A 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5529865 rs186434 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5530137 rs201719446 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5536537 rs393044 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9819;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5536848 rs2017433 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.65;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5352;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5566030 rs1995158 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.94;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8679;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5566051 rs1995157 C A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.44;AMR_AF=0.51;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.58;LDAF=0.4118;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5566112 rs1995156 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.44;AMR_AF=0.51;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=0.58;LDAF=0.4122;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5566365 rs1566275 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8660;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5566489 rs10769054 C T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.45;AMR_AF=0.51;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4136;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5566789 rs12798586 A G 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2007;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5602275 rs1077126 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.63;AMR_AF=0.53;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5456;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5602438 rs2341432 T A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.97;AVGPOST=0.9915;ERATE=0.0055;EUR_AF=0.47;LDAF=0.6760;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5602605 rs2341433 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.61;AMR_AF=0.53;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5402;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5602615 rs2341434 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.63;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6860;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5602679 rs892336 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.63;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6860;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5602790 rs2163946 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.63;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6860;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5602928 rs10838375 G C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.63;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6861;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5602968 rs10769086 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8856;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5603136 rs10838376 C A 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.57;AMR_AF=0.52;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.34;LDAF=0.5284;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5603163 rs10838377 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.63;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6860;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5625847 rs3751006 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.69;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6581;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5629607 rs10769121 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.57;AMR_AF=0.36;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3886;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5632212 rs10769124 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.55;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7408;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5655150 rs7941976 T A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9095;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5664831 rs3740998 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.18;AMR_AF=0.36;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3379;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5664974 rs7109861 T C 100 PASS AA=t;AC=2;AF=0.90;AFR_AF=0.65;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8958;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5701281 rs3740996 G A 100 PASS AA=G;AC=2;AF=0.12;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.12;LDAF=0.1188;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5701409 rs3824949 G C 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0025;EUR_AF=0.54;LDAF=0.4127;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 5717762 rs10838543 T C 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.18;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.52;LDAF=0.3808;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5718517 rs7935564 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.47;AMR_AF=0.49;AN=2;ASN_AF=0.18;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4558;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 5719667 rs2291842 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.37;AMR_AF=0.32;AN=2;ASN_AF=0.31;AVGPOST=0.9736;ERATE=0.0227;EUR_AF=0.20;LDAF=0.2919;RSQ=0.9526;SNPSOURCE=LOWCOV,EXOME;THETA=0.0220;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5729419 rs112606816 T C 100 PASS AA=T;AC=1;AF=0.0041;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.01;LDAF=0.0042;RSQ=0.9684;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5730248 rs999295 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.53;AMR_AF=0.36;AN=2;ASN_AF=0.37;AVGPOST=0.9992;ERATE=0.0031;EUR_AF=0.25;LDAF=0.3612;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5758051 rs75758940 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0210;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5758062 rs7397032 T C 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.62;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.84;LDAF=0.7354;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5758118 rs7396766 A C 100 PASS AA=C;AC=1;AF=0.86;AFR_AF=0.71;AMR_AF=0.81;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8556;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5776287 rs7936512 C T 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9283;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5776470 rs7394584 T G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.80;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9072;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5776484 rs4910844 A T 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.19;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2145;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5776623 rs7396938 A T 100 PASS AA=T;AC=1;AF=0.91;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9099;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5809308 rs7934670 A T 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.91;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9266;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5809477 rs10838637 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.44;AMR_AF=0.26;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3062;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5809673 rs10769224 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.44;AMR_AF=0.26;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3053;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5809746 rs10742787 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.44;AMR_AF=0.26;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3057;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5810080 rs10742788 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.44;AMR_AF=0.26;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3056;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5841856 rs4758435 C T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.69;AMR_AF=0.71;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7317;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5906048 rs4758168 G A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8115;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5906073 rs4757986 G T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8111;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5906192 rs1453435 A C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.90;AMR_AF=0.79;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8339;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5906205 rs4757987 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.49;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4320;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 5968728 rs1840178 T C 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.47;AMR_AF=0.65;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5700;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 5969185 rs10769378 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2257;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6007272 rs4237768 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.77;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8449;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6007613 rs4354673 T G 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.44;AMR_AF=0.81;AN=2;ASN_AF=0.89;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7501;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6007680 rs4436524 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.57;AMR_AF=0.82;AN=2;ASN_AF=0.89;AVGPOST=0.9979;ERATE=0.0020;EUR_AF=0.81;LDAF=0.7774;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6007743 rs4436525 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.70;AMR_AF=0.82;AN=2;ASN_AF=0.87;AVGPOST=0.9529;ERATE=0.0247;EUR_AF=0.73;LDAF=0.7636;RSQ=0.9149;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +11 6007899 rs4501959 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1941;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6129837 rs1462983 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.12;AMR_AF=0.53;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6221169 rs10839531 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.25;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7130;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6221214 rs11040799 T A 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.22;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.74;LDAF=0.6224;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6221427 rs12417049 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.08;LDAF=0.1181;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6231731 rs10769671 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.38;AMR_AF=0.78;AN=2;ASN_AF=0.78;AVGPOST=0.9888;ERATE=0.0056;EUR_AF=0.74;LDAF=0.6728;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6239139 rs11040809 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9966;ERATE=0.0359;EUR_AF=0.23;LDAF=0.1131;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6243804 rs3750945 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.36;AMR_AF=0.84;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7509;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6243843 rs3750946 C G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.49;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7834;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6340525 rs12570 A T 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.74;AVGPOST=0.9930;ERATE=0.0033;EUR_AF=0.71;LDAF=0.6643;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6341365 rs11544764 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0976;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6341684 rs2682123 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9960;ERATE=0.0006;EUR_AF=0.97;LDAF=0.9573;RSQ=0.9674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.97,-0.00 +11 6411935 rs1050228 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.22;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9729;ERATE=0.0059;EUR_AF=0.64;LDAF=0.5840;RSQ=0.9658;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +11 6414651 rs201063268 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6415463 rs1050239 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1806;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6416959 rs1800606 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.88;AMR_AF=0.84;AN=2;ASN_AF=0.99;AVGPOST=0.9984;ERATE=0.0010;EUR_AF=0.89;LDAF=0.9075;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6503127 rs2303492 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.34;LDAF=0.2512;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6519642 rs11604149 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.35;AMR_AF=0.48;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3944;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6520015 rs11040899 G T 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.35;AMR_AF=0.48;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3926;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6520164 rs2555158 T A 100 PASS AA=g;AC=1;AF=0.49;AFR_AF=0.72;AMR_AF=0.51;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6530278 rs10839568 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2444;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6532519 rs4758423 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2449;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6588228 rs10769699 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.26;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.40;LDAF=0.2765;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6621516 rs11040933 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.34;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.39;LDAF=0.2918;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6622714 rs2288283 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.43;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.86;LDAF=0.7646;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6622857 rs11826421 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.68;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4405;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6624617 rs12420389 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.08;AVGPOST=0.9970;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2156;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.09,-0.71 +11 6629665 rs1043388 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.27;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=0.25;LDAF=0.3144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6630410 rs11826498 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.26;LDAF=0.1536;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6630833 rs1043390 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.55;AMR_AF=0.28;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.25;LDAF=0.3478;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6631016 rs2292195 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1860;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6632450 rs12451 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1673;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6636106 rs1128396 T A 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2339;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6637504 rs2072651 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2258;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6637518 rs7943955 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6643976 rs7122587 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.37;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9986;ERATE=0.0019;EUR_AF=0.22;LDAF=0.2139;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6644600 rs72911011 C T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1462;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6646108 rs10458926 T C 100 PASS AA=t;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2061;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6647622 rs11827437 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.30;AMR_AF=0.35;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.38;LDAF=0.3747;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6647931 rs34782445 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.25;AMR_AF=0.34;AN=2;ASN_AF=0.45;AVGPOST=0.9993;ERATE=0.0017;EUR_AF=0.38;LDAF=0.3620;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6647978 rs4442534 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.34;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3606;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6648424 rs4758443 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.12;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3336;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6648573 rs11040936 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.08;AN=2;ASN_AF=0.22;AVGPOST=0.9779;ERATE=0.0436;EUR_AF=0.06;LDAF=0.1161;RSQ=0.9202;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6648937 rs11040937 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3593;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6652618 rs2659871 C T 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.62;AMR_AF=0.42;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4616;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6653232 rs2659870 C G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.50;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4280;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6654613 rs11040938 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.82;AMR_AF=0.45;AN=2;ASN_AF=0.47;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5225;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.58,-0.00 +11 6655332 rs2659869 T A 100 PASS AA=A;AC=2;AF=0.40;AFR_AF=0.38;AMR_AF=0.38;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4036;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6655433 rs997263 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0012;EUR_AF=0.39;LDAF=0.3671;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6789929 rs11828782 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2469;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6790106 rs7102536 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.90;AMR_AF=0.84;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8688;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6806496 rs11041022 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=0.9970;ERATE=0.0023;EUR_AF=0.33;LDAF=0.2373;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6806827 rs2659880 G T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2390;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6807163 rs2659879 C G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.11;AMR_AF=0.26;AN=2;ASN_AF=0.26;AVGPOST=0.9960;ERATE=0.0041;EUR_AF=0.34;LDAF=0.2555;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6807243 rs497681 G A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.50;AMR_AF=0.52;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6816778 rs866347 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.47;AMR_AF=0.63;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7044;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6891385 rs2741764 G A 100 PASS AA=g;AC=2;AF=0.28;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2754;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +11 6913127 rs2741804 A G 100 PASS AA=a;AC=2;AF=0.43;AFR_AF=0.14;AMR_AF=0.56;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4264;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6913244 rs1965208 A G 100 PASS AA=g;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9501;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 6942476 rs10839658 C A 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.30;AMR_AF=0.51;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4612;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6942628 rs11605995 A C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.59;AMR_AF=0.32;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3761;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6942726 rs10839659 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2843;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6942952 rs2035844 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.59;AMR_AF=0.32;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3761;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6943254 rs1388535 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.59;AMR_AF=0.32;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3762;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 6953858 rs11041108 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2751;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 6976988 rs2239731 A T 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.43;AMR_AF=0.79;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6646;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7022038 rs12575236 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.25;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1931;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 7022160 rs2857919 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.71;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9196;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7022531 rs1156525 A T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.37;AMR_AF=0.62;AN=2;ASN_AF=0.78;AVGPOST=0.9942;ERATE=0.0078;EUR_AF=0.64;LDAF=0.6135;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7022717 rs1156526 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.41;AMR_AF=0.61;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5896;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7059960 rs12801277 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9674;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7063755 rs7123944 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9644;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7064929 rs144045277 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +11 7070866 rs1552727 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.45;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6229;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7071031 rs1552726 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7079038 rs10839708 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.35;AMR_AF=0.59;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.60;LDAF=0.5639;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7110363 rs4758158 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.44;AVGPOST=0.9967;ERATE=0.0010;EUR_AF=0.37;LDAF=0.3335;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 7324475 rs4412741 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7439264 rs34058874 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.12;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1732;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 7441737 rs11041372 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1065;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 7509566 rs12805648 A T 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1883;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 7509682 rs12803770 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1883;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 7586738 rs6578874 G T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.86;AMR_AF=0.32;AN=2;ASN_AF=0.37;AVGPOST=0.9981;ERATE=0.0032;EUR_AF=0.51;LDAF=0.5226;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 7618953 rs4758203 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.24;AMR_AF=0.27;AN=2;ASN_AF=0.55;AVGPOST=0.9933;ERATE=0.0763;EUR_AF=0.26;LDAF=0.3315;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 7670440 rs4758209 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7817512 rs7931212 G T 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2689;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7817538 rs7949771 T C 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2693;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7817665 rs72484720 T C 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2690;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7817852 rs76615008 C G 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2690;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7817856 rs78460198 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2689;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7817959 rs73406603 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2690;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7818056 rs73406604 T C 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2690;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7818151 rs73406606 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2690;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7818190 rs73406607 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2690;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7818313 rs73406609 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2690;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7818518 rs73406611 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2690;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7847466 rs1482792 A G 100 PASS AA=a;AC=2;AF=0.83;AFR_AF=0.76;AMR_AF=0.93;AN=2;ASN_AF=0.65;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8305;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7949350 rs4758258 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.72;AMR_AF=0.82;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7797;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 7949791 rs7933807 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.38;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4132;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 7949860 rs7928451 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.28;AMR_AF=0.38;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3958;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 7950024 rs12272735 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3386;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 7982094 rs12363522 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0342;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 8009241 rs12421289 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.19;LDAF=0.0910;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.94 +11 8014479 rs4758267 C T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.42;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=0.9775;ERATE=0.0271;EUR_AF=0.70;LDAF=0.6816;RSQ=0.9695;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8016499 rs56392532 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.19;LDAF=0.0901;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 8061231 rs17847539 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=0.9985;ERATE=0.0062;EUR_AF=0.06;LDAF=0.1301;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 8115699 rs4758289 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.49;AVGPOST=0.9837;ERATE=0.0492;EUR_AF=0.24;LDAF=0.3447;RSQ=0.9747;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 8115762 rs7396690 C G 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.44;AMR_AF=0.87;AN=2;ASN_AF=0.79;AVGPOST=0.9948;ERATE=0.0395;EUR_AF=0.94;LDAF=0.7761;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +11 8117228 rs11041739 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9942;RSQ=0.9494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +11 8118185 rs10160258 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9639;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8118200 rs7931842 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9959;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8159892 rs10839976 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.27;AMR_AF=0.33;AN=2;ASN_AF=0.41;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3093;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 8251921 rs3750952 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.05;AMR_AF=0.49;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3423;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 8284838 rs204931 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9920;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9734;RSQ=0.8697;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +11 8435078 rs3751096 A C 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1870;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 8483335 rs1900273 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.70;AMR_AF=0.51;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5566;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 8486310 rs1446464 C A 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.35;AMR_AF=0.42;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4246;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 8706406 rs4670 T G 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.25;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.06;LDAF=0.1138;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 8707233 rs6735 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.21;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1888;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 8716968 rs2270955 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.29;AMR_AF=0.12;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 8751640 rs3812762 G C 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.34;LDAF=0.2906;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8933064 rs1133833 G A 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.0035;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1435;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +11 8934101 rs2742518 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.63;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9120;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8938934 rs2016844 C T 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.36;LDAF=0.2492;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8942942 rs2653601 C T 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2518;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8942999 rs2568023 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9337;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8947021 rs2653588 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.58;AMR_AF=0.92;AN=2;ASN_AF=0.96;AVGPOST=0.9782;ERATE=0.0292;EUR_AF=0.96;LDAF=0.8638;RSQ=0.9432;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8947179 rs2568077 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2523;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 8959370 rs2742505 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2518;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 9167399 rs10732517 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 9171775 rs7123970 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.67;AMR_AF=0.31;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3656;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 9199650 rs60693427 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2445;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 9225486 rs952374 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3404;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 9316937 rs4601780 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9523;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +11 9406349 rs4606477 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9855;RSQ=0.9723;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.69,-0.00 +11 9537904 rs10743108 G C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9049;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 9715646 rs3763865 T C 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.29;AMR_AF=0.71;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5628;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 9746201 rs1695613 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2706;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 9749645 rs397686 A C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2702;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 9754221 rs360157 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.47;AMR_AF=0.60;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5127;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.100:-5.00,-1.43,-0.02 +11 9759713 rs93138 T G 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.47;AMR_AF=0.60;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5154;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 9769562 rs415895 C G 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.49;AMR_AF=0.65;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5544;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 9812236 rs2645029 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.88;AMR_AF=0.88;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8372;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 9830595 rs11042500 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.23;AMR_AF=0.34;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3012;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 9861009 rs7483882 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.87;LDAF=0.6736;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 9879838 rs7102464 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0566;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 10022585 rs7128234 A T 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2043;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 10503740 rs202051288 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.8383;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 10521764 rs3741041 T C 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.09;AMR_AF=0.40;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4020;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10522983 rs63371362 G T 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.27;AMR_AF=0.56;AN=2;ASN_AF=0.66;AVGPOST=0.9938;ERATE=0.0043;EUR_AF=0.50;LDAF=0.5014;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +11 10526060 rs7943804 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.80;AMR_AF=0.91;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8697;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10555589 rs1065052 A G 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.05;AMR_AF=0.39;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3940;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10631247 rs3741042 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.68;AMR_AF=0.48;AN=2;ASN_AF=0.71;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.47;LDAF=0.5795;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10645289 rs61892975 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.11;AMR_AF=0.38;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4114;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 10647702 rs2241489 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.71;AVGPOST=0.9940;ERATE=0.0028;EUR_AF=0.46;LDAF=0.4802;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 10650329 rs2278125 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.54;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6035;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 10655609 rs2162044 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9727;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 10786142 rs3736326 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.32;AMR_AF=0.74;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6143;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 10821055 rs3736327 C T 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.58;AMR_AF=0.71;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6116;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10822202 rs4910190 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.15;AMR_AF=0.63;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4895;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10822350 rs7951708 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10823815 rs7105210 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10824540 rs10743150 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.92;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9515;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10824731 rs2270620 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.17;AMR_AF=0.67;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5087;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10827418 rs11042964 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.14;AMR_AF=0.63;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 10828361 rs10743151 C A 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.14;AMR_AF=0.63;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 11292700 rs10831567 G C 100 PASS AA=c;AC=1;AF=0.41;AFR_AF=0.36;AMR_AF=0.48;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0021;EUR_AF=0.45;LDAF=0.4136;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 11314538 rs10437598 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.40;AMR_AF=0.45;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.42;LDAF=0.4040;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 11354346 rs901553 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.39;AN=2;ASN_AF=0.59;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4206;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 11354393 rs901554 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.76;AMR_AF=0.94;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8610;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 11398698 rs10444245 G A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.75;AMR_AF=0.66;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.84;LDAF=0.6915;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 11400590 rs201333604 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +11 11905993 rs10765894 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.92;AMR_AF=0.72;AN=2;ASN_AF=0.79;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7702;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 11913585 rs11022079 G T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.94;AMR_AF=0.74;AN=2;ASN_AF=0.87;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8007;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 11976628 rs7933089 G A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.87;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6944;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 11986061 rs3206824 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.82;AMR_AF=0.87;AN=2;ASN_AF=0.78;AVGPOST=0.9993;ERATE=0.0012;EUR_AF=0.75;LDAF=0.7918;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 11989899 rs2291599 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.95;AMR_AF=0.91;AN=2;ASN_AF=0.71;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8359;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 12225946 rs3763823 T G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.89;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6919;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 12279991 rs11022265 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.23;LDAF=0.2029;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 12313887 rs1874043 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9364;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 12315186 rs10741578 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9981;ERATE=0.0016;EUR_AF=0.36;LDAF=0.5102;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 12315407 rs10741579 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.92;AMR_AF=0.94;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9432;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 12315716 rs1493951 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.94;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9382;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 12315848 rs1493952 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.54;AMR_AF=0.40;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4348;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 12315891 rs1493953 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.94;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9383;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 12315915 rs1493954 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.58;AMR_AF=0.43;AN=2;ASN_AF=0.67;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4932;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 12316389 rs3812754 A C 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.19;AVGPOST=0.9064;ERATE=0.0265;EUR_AF=0.54;LDAF=0.3577;RSQ=0.8563;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.06,-0.00,-5.00 +11 12379792 rs10741583 G C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.85;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8999;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 13514263 rs6254 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.10;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2108;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 13514417 rs694 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.27;AMR_AF=0.45;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.63;LDAF=0.4287;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 13716530 rs7130943 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.57;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4657;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 14303282 rs2303972 T A 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0029;EUR_AF=0.42;LDAF=0.3381;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 14501296 rs2575857 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.74;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=0.9986;ERATE=0.0007;EUR_AF=0.63;LDAF=0.6914;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 14632570 rs1403247 A C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.65;AMR_AF=0.67;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6234;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 14810762 rs4757268 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.67;AMR_AF=0.68;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6463;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 14913575 rs12794714 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3515;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 14991539 rs5239 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.9721;ERATE=0.0128;EUR_AF=0.99;LDAF=0.9597;RSQ=0.7398;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 15170644 rs1714354 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.74;AMR_AF=0.72;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5903;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 15170807 rs12222688 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.27;AMR_AF=0.29;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2147;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 15199957 rs1714376 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.83;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8920;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 16007743 rs146661971 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0069;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 16133413 rs4617548 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.60;AVGPOST=0.9934;ERATE=0.0067;EUR_AF=0.50;LDAF=0.5259;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 16766106 rs2270886 T C 100 PASS AA=T;AC=2;AF=0.20;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1979;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 16877497 rs11024058 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1293;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17035718 rs61881311 A G 100 PASS AA=g;AC=2;AF=0.72;AFR_AF=0.59;AMR_AF=0.71;AN=2;ASN_AF=0.97;AVGPOST=0.9915;ERATE=0.0014;EUR_AF=0.61;LDAF=0.7145;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.79,-0.00 +11 17096059 rs11024148 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.64;AMR_AF=0.61;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6303;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17111272 rs10832733 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.64;AMR_AF=0.62;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6335;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17126670 rs2052188 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.39;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3674;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 17172133 rs2302511 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.84;AMR_AF=0.94;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8538;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17191019 rs214936 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.36;AMR_AF=0.39;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3665;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 17333377 rs12225041 T G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.47;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2791;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17333663 rs2521998 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17408630 rs5215 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.95;AMR_AF=0.69;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7194;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17409069 rs5218 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.03;AMR_AF=0.18;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2749;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17409572 rs5219 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.97;AMR_AF=0.70;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7253;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17414715 rs1109591 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.47;AMR_AF=0.50;AN=2;ASN_AF=0.14;AVGPOST=0.9976;ERATE=0.0008;EUR_AF=0.34;LDAF=0.3432;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 17417504 rs739689 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.75;AMR_AF=0.45;AN=2;ASN_AF=0.10;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3878;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.95 +11 17418477 rs757110 C A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.97;AMR_AF=0.67;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.66;LDAF=0.7139;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17419279 rs1799859 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.65;AMR_AF=0.40;AN=2;ASN_AF=0.10;AVGPOST=0.9886;ERATE=0.0141;EUR_AF=0.27;LDAF=0.3315;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 17429922 rs2106865 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6604;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17436936 rs4148626 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8903;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17448704 rs1799854 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.16;AMR_AF=0.51;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.42;LDAF=0.4160;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17452492 rs1799857 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.46;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9986;ERATE=0.0032;EUR_AF=0.42;LDAF=0.3865;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 17484971 rs2301703 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.74;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4712;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17496516 rs1048099 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.39;AMR_AF=0.52;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0038;EUR_AF=0.49;LDAF=0.4430;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0131;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17517235 rs10832795 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9994;ERATE=0.0012;EUR_AF=0.44;LDAF=0.3856;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 17519697 rs2072232 C G 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1577;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17519864 rs2072233 C T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1537;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 17533635 rs2190454 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.67;AMR_AF=0.76;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7038;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17542439 rs2240487 T C 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.33;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9983;ERATE=0.0030;EUR_AF=0.56;LDAF=0.5578;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17542583 rs2108332 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.54;AMR_AF=0.60;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.56;LDAF=0.6155;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17542586 rs2041031 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.54;AMR_AF=0.60;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.56;LDAF=0.6156;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0107;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17542872 rs2240488 G C 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.25;AMR_AF=0.48;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4690;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 17548737 rs12795083 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 17809762 rs149628273 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9995;ERATE=0.0005;LDAF=0.0103;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18044304 rs211101 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 18047255 rs1799913 G T 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3583;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18054777 rs10832874 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.06;AMR_AF=0.37;AN=2;ASN_AF=0.45;AVGPOST=0.9888;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3289;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18159169 rs2468839 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9566;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 18159254 rs4274188 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.54;AMR_AF=0.82;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7733;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +11 18194827 rs2468774 C G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3428;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.36,-0.02 +11 18194878 rs2445180 T G 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3423;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +11 18194964 rs1869788 A G 100 PASS AA=N;AC=2;AF=0.38;AFR_AF=0.37;AMR_AF=0.34;AN=2;ASN_AF=0.48;AVGPOST=0.9971;ERATE=0.0041;EUR_AF=0.32;LDAF=0.3752;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +11 18195051 rs2445179 T C 100 PASS AA=t;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 18195448 rs4630269 C T 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3419;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 18253176 rs2460827 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.67;AMR_AF=0.96;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 18267027 rs2468844 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.55;AMR_AF=0.78;AN=2;ASN_AF=0.92;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8001;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +11 18267471 rs1136766 A G 100 PASS AA=a;AC=2;AF=0.60;AFR_AF=0.47;AMR_AF=0.61;AN=2;ASN_AF=0.65;AVGPOST=0.9482;ERATE=0.0731;EUR_AF=0.65;LDAF=0.5964;RSQ=0.8798;SNPSOURCE=EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.77,-0.00 +11 18290874 rs1136747 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.48;AMR_AF=0.62;AN=2;ASN_AF=0.60;AVGPOST=0.9648;ERATE=0.0069;EUR_AF=0.64;LDAF=0.5887;RSQ=0.9420;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|0:0.900:-0.48,-0.48,-0.48 +11 18290880 rs28720026 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.93;AMR_AF=0.97;AN=2;ASN_AF=0.97;AVGPOST=0.9594;ERATE=0.0096;EUR_AF=0.96;LDAF=0.9518;RSQ=0.6693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +11 18312953 rs4757638 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6628;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18317699 rs2305565 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6627;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18327684 rs1140047 G T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.81;AMR_AF=0.72;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8062;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18357270 rs4150581 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.09;AMR_AF=0.51;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4470;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18379629 rs4150661 C A 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.46;AMR_AF=0.70;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7244;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +11 18424451 rs5030621 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.46;AMR_AF=0.73;AN=2;ASN_AF=0.62;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.74;LDAF=0.6438;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 18424487 rs4820 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.38;AMR_AF=0.69;AN=2;ASN_AF=0.58;AVGPOST=0.9771;ERATE=0.0245;EUR_AF=0.69;LDAF=0.5918;RSQ=0.9711;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 18424590 rs3758680 T A 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.47;AMR_AF=0.73;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6449;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 18467821 rs2658565 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=0.9779;ERATE=0.0257;EUR_AF=0.94;LDAF=0.9429;RSQ=0.8558;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 18632984 rs10128711 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.15;AMR_AF=0.69;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5183;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 18633971 rs11605097 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.10;AMR_AF=0.47;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3356;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 18722791 rs733460 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1354;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18751041 rs1550870 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3353;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 18764026 rs4757707 G C 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.04;AMR_AF=0.53;AN=2;ASN_AF=0.30;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3111;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 18793465 rs142701506 A C 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0084;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 18955744 rs11599929 C T 100 PASS AA=.;AC=1;AF=0.28;AFR_AF=0.27;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=0.9966;ERATE=0.0097;EUR_AF=0.23;LDAF=0.2826;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 18956196 rs78179510 C T 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9977;ERATE=0.0028;EUR_AF=0.15;LDAF=0.1750;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 19197365 rs78603780 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.11;AMR_AF=0.14;AN=2;ASN_AF=0.0017;AVGPOST=0.9980;ERATE=0.0025;EUR_AF=0.16;LDAF=0.1039;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 19252427 rs793252 G T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9970;ERATE=0.0072;EUR_AF=0.38;LDAF=0.4230;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0111;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 19256250 rs793269 C T 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 19854088 rs6483617 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.61;AMR_AF=0.39;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4173;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 19955194 rs16937251 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.37;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.03;LDAF=0.1307;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 19955500 rs1372989 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.64;AMR_AF=0.79;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0021;EUR_AF=0.90;LDAF=0.7513;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 19970558 rs2585773 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9724;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 19970579 rs2707084 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9529;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20005802 rs6483629 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.33;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1330;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20065779 rs3802800 C G 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.63;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8838;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20067064 rs7125647 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.63;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.56;LDAF=0.6768;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20070225 rs12283929 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.26;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0012;EUR_AF=0.25;LDAF=0.2404;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20089944 rs1442710 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.35;AMR_AF=0.30;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.20;LDAF=0.3364;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20089978 rs1442709 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.42;AMR_AF=0.29;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0045;EUR_AF=0.21;LDAF=0.3568;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20099112 rs4757028 A T 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.88;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.89;LDAF=0.9031;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20099541 rs6483642 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.91;AMR_AF=0.88;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9109;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20101704 rs1867114 C T 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.91;AMR_AF=0.86;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9067;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20101744 rs1867115 C A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.96;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20101769 rs3758695 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.28;AMR_AF=0.34;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3517;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20104669 rs2028570 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.23;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0026;EUR_AF=0.58;LDAF=0.4157;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 20112373 rs2289560 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.27;AMR_AF=0.41;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4013;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20112417 rs2243624 A C 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.48;AMR_AF=0.43;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4517;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20112492 rs1837971 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.46;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4396;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 20117232 rs2289566 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.22;AMR_AF=0.41;AN=2;ASN_AF=0.90;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.30;LDAF=0.4573;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20124914 rs2243411 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.78;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=0.9993;ERATE=0.0039;EUR_AF=0.99;LDAF=0.9283;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0105;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20127046 rs11025385 C A 100 PASS AA=c;AC=1;AF=0.57;AFR_AF=0.19;AMR_AF=0.68;AN=2;ASN_AF=0.47;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.83;LDAF=0.5672;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 20139632 rs2245836 G C 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.28;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.11;LDAF=0.3104;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 20403825 rs7926967 A T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9712;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 20404506 rs2403587 T C 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.52;AMR_AF=0.65;AN=2;ASN_AF=0.41;AVGPOST=0.9525;ERATE=0.0804;EUR_AF=0.71;LDAF=0.5698;RSQ=0.9138;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.03,-0.00 +11 20404613 rs3824886 T G 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.60;AMR_AF=0.76;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7121;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20404757 rs3781679 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.60;AMR_AF=0.75;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7093;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20411418 rs7937501 G C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.57;AMR_AF=0.75;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7033;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +11 20429454 rs10741836 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=1.00;AMR_AF=0.87;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8857;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20473655 rs1001669 T G 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.56;AMR_AF=0.75;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7037;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20515555 rs6483697 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20529886 rs6483700 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9890;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20622975 rs1443547 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.41;AMR_AF=0.35;AN=2;ASN_AF=0.35;AVGPOST=0.9962;ERATE=0.0013;EUR_AF=0.37;LDAF=0.3694;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +11 20623042 rs1443548 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.83;AMR_AF=0.75;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.79;LDAF=0.7888;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +11 20623156 rs1443549 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +11 20639400 rs7925597 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20639479 rs11827415 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.35;AMR_AF=0.38;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3577;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20648418 rs4923548 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9437;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20658679 rs2000959 C A 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.15;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3154;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20673867 rs2276433 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.19;AMR_AF=0.51;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4886;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20805286 rs8176785 G A 100 PASS AA=g;AC=2;AF=0.69;AFR_AF=0.29;AMR_AF=0.83;AN=2;ASN_AF=0.85;AVGPOST=0.9922;ERATE=0.0149;EUR_AF=0.75;LDAF=0.6864;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 20959429 rs1880087 T C 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.26;AMR_AF=0.68;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5819;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 21581805 rs8176789 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.28;AMR_AF=0.65;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6161;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 21581854 rs201134228 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 22242729 rs4312063 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.94;AMR_AF=0.73;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7573;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 22271870 rs7481951 A T 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.42;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3492;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 22297770 rs11026488 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2380;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 22301077 rs76850415 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0196;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 22647366 rs3740615 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1554;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 22696451 rs922571 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.17;AMR_AF=0.61;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5677;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 24759855 rs1564992 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.57;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3469;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 26552702 rs293937 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 26563464 rs410036 A T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.62;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7271;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 26563652 rs420143 T G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.62;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7271;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 26568966 rs2663168 A G 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.58;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6906;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 26584625 rs444178 C A 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.57;AMR_AF=0.71;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5827;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 26586801 rs15783 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.51;AMR_AF=0.70;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.65;LDAF=0.5676;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 26587133 rs293980 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.70;AMR_AF=0.77;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6546;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 26619872 rs7112022 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2921;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 26656563 rs7946841 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3345;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 26663394 rs10835040 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3519;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 26677947 rs10835051 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.32;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5361;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 26694979 rs4369354 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.34;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4172;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 26702664 rs10734383 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9917;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 26705310 rs3924551 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.29;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4493;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 26732923 rs4322349 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3063;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 26734209 rs10742156 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.44;AMR_AF=0.90;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8135;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 27076977 rs2305095 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1531;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 27077118 rs10767598 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 27362359 rs17244028 T G 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.1989;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 27389403 rs2447996 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0256;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 27390089 rs2447997 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 27679662 rs2353512 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9955;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 27679916 rs6265 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2284;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 28045260 rs33937991 A G 100 PASS AA=a;AC=1;AF=0.24;AFR_AF=0.43;AMR_AF=0.21;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2377;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 28057957 rs10458896 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.62;AMR_AF=0.24;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 28134974 rs60970073 C A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.67;AMR_AF=0.36;AN=2;ASN_AF=0.70;AVGPOST=0.9755;ERATE=0.0263;EUR_AF=0.38;LDAF=0.5222;RSQ=0.9695;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 30032253 rs201734181 T G 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.25;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9509;ERATE=0.1250;EUR_AF=0.24;LDAF=0.2936;RSQ=0.8607;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 30033191 rs3802914 G A 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.29;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1596;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 30253641 rs609896 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.57;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 30255185 rs6169 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.53;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5951;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 31312205 rs201039841 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +11 31327316 rs2616815 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.91;AMR_AF=0.72;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.6581;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 31653956 rs4922872 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9882;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 31812215 rs3026393 A C 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0023;EUR_AF=0.53;LDAF=0.4507;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 32118925 rs223073 A G 100 PASS AA=g;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 32124978 rs4876 T C 100 PASS AA=t;AC=1;AF=0.49;AFR_AF=0.22;AMR_AF=0.48;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4914;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 32125961 rs11529889 C T 100 PASS AA=t;AC=1;AF=0.46;AFR_AF=0.25;AMR_AF=0.44;AN=2;ASN_AF=0.65;AVGPOST=0.9875;ERATE=0.0541;EUR_AF=0.45;LDAF=0.4564;RSQ=0.9841;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 32410774 rs1799937 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.53;AMR_AF=0.36;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4593;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 32414333 rs2234593 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.26;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1062;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 32449486 rs1799933 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.63;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2177;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.33,-0.28 +11 32456694 rs2234582 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.62;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9957;ERATE=0.0008;EUR_AF=0.19;LDAF=0.2507;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.94,-0.05 +11 32657266 rs201854 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.77;AMR_AF=0.70;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6183;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 32674627 rs172101 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.54;AMR_AF=0.37;AN=2;ASN_AF=0.17;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3807;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 32697598 rs35630681 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.09;AVGPOST=0.9934;ERATE=0.0052;EUR_AF=0.08;LDAF=0.0907;RSQ=0.9690;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 32720887 rs12808227 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.10;AMR_AF=0.09;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0907;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 32874926 rs11032025 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.43;AMR_AF=0.50;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4250;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 32954344 rs1022586 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 32956244 rs7940077 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 32956620 rs7481878 A G 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.58;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8074;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 33050100 rs3802790 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.39;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.38;LDAF=0.4075;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 33053107 rs966191 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.40;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4141;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33054562 rs2273536 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.40;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.4090;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33054794 rs2273540 T G 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.40;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4091;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33065394 rs1064005 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.4141;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33076191 rs2273544 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.62;AMR_AF=0.67;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7308;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33078643 rs2273546 T C 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.43;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9987;ERATE=0.0040;EUR_AF=0.38;LDAF=0.4175;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33079445 rs2273548 G T 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.43;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.38;LDAF=0.4140;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33080496 rs11032133 T C 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.43;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.4141;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33362723 rs266470 G T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6946;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33773161 rs7479064 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9749;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 33775982 rs2272065 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.27;AMR_AF=0.39;AN=2;ASN_AF=0.28;AVGPOST=0.9948;ERATE=0.0085;EUR_AF=0.42;LDAF=0.3464;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 33881016 rs3740617 T C 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.45;AMR_AF=0.69;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5438;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34107785 rs4755360 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34152939 rs2957516 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34154641 rs2957518 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.55;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0010;EUR_AF=0.96;LDAF=0.8796;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34161907 rs2982614 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0197;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 34460541 rs1049982 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.53;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5255;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.07,-0.84 +11 34482908 rs769217 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2839;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 34502345 rs2231828 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.29;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2130;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 34511541 rs2231825 C A 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2272;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 34527152 rs2231821 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.1607;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 34668143 rs2281910 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.16;AMR_AF=0.32;AN=2;ASN_AF=0.38;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2586;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 34678435 rs435537 C G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34904399 rs2288667 C T 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.40;AMR_AF=0.57;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6150;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34909926 rs1571133 T G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.40;AMR_AF=0.57;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6152;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34910397 rs1977420 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4570;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34910433 rs1977421 A G 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.40;AMR_AF=0.57;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6152;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34912013 rs2303959 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4570;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 34937813 rs2956114 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.26;AMR_AF=0.39;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4337;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +11 34938265 rs2956109 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7880;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +11 34978892 rs2243948 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.26;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.71;LDAF=0.5859;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 34979095 rs79170416 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 34988343 rs61760973 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.26;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0850;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 34991727 rs497582 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.35;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6074;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 34999745 rs10768108 C G 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.13;AMR_AF=0.52;AN=2;ASN_AF=0.72;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.68;LDAF=0.5383;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 35198108 rs4756196 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5251;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 35201842 rs1071695 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1522;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 35201982 rs76393888 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0645;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 35229673 rs1467558 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.83;LDAF=0.9167;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 35233014 rs144898660 A G 100 PASS AA=A;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 35308369 rs1042113 T C 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.32;AMR_AF=0.26;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2697;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 35323200 rs2273689 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.29;AMR_AF=0.67;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5910;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 35327748 rs752949 C T 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.15;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2317;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 35327825 rs3895234 A G 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.15;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2312;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 35334032 rs56028027 T C 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2469;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 35336737 rs189426732 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 35338893 rs2273687 G C 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2096;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +11 35456061 rs61736408 T C 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.33;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1311;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 35456153 rs35216474 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.33;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1311;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 35827958 rs61881297 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.0041;AMR_AF=0.12;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1076;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 36057626 rs262451 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.19;AMR_AF=0.62;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4431;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 36103228 rs1138807 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.38;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3513;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 36422792 rs330261 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.58;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.91;LDAF=0.8547;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 36484208 rs514352 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 40137543 rs2953310 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.70;AMR_AF=0.48;AN=2;ASN_AF=0.64;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5320;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 43429174 rs202210346 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 43702581 rs4573669 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.51;AMR_AF=0.80;AN=2;ASN_AF=0.96;AVGPOST=0.9917;ERATE=0.0011;EUR_AF=0.74;LDAF=0.7558;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +11 43772549 rs12801203 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4063;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 43852491 rs6485471 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.17;AMR_AF=0.33;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4214;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 43876435 rs3736505 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.43;AMR_AF=0.45;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3272;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 43876698 rs11555762 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.42;AMR_AF=0.45;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3253;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 43905484 rs2271817 T G 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.10;AMR_AF=0.40;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2409;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 43911365 rs2434478 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9972;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 43913604 rs16937692 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0571;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 43913707 rs3740985 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0640;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 43940566 rs7926534 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.63;AMR_AF=0.88;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8565;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 43940644 rs1048928 G T 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.29;AMR_AF=0.65;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6165;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 44080210 rs2074051 T C 100 PASS AA=t;AC=2;AF=0.80;AFR_AF=0.89;AMR_AF=0.62;AN=2;ASN_AF=0.87;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.78;LDAF=0.8016;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 44089161 rs178514 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.97;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.80;LDAF=0.8309;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 44096238 rs178521 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.70;AMR_AF=0.79;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7998;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 44151577 rs11037882 T A 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.09;AMR_AF=0.45;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3053;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 44257802 rs3740878 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.42;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2883;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 44289071 rs12419361 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.13;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0976;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 44296946 rs11037928 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0742;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 44297054 rs10769028 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 44297253 rs11037929 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9465;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 44331309 rs12421995 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9613;ERATE=0.0017;EUR_AF=0.47;LDAF=0.3632;RSQ=0.9412;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-2.26,-0.08,-0.77 +11 44331509 rs3824915 C G 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.26;AMR_AF=0.38;AN=2;ASN_AF=0.49;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4178;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-1.14,-0.03,-5.00 +11 44636839 rs883752 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2569;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 44639921 rs2303863 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.38;AMR_AF=0.62;AN=2;ASN_AF=0.46;AVGPOST=0.9867;ERATE=0.0114;EUR_AF=0.58;LDAF=0.5130;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 44940828 rs2291334 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3404;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 44959213 rs2279363 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.27;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4585;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.02,-0.00 +11 44959924 rs2306666 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.36;AMR_AF=0.56;AN=2;ASN_AF=0.67;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5162;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 45672261 rs3802762 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.43;AMR_AF=0.81;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6806;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 45832295 rs7127456 A G 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.36;AMR_AF=0.25;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2165;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +11 45877529 rs2292913 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7761;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 45935384 rs1132349 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.58;AMR_AF=0.69;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.6763;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 45936035 rs3802758 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.58;AMR_AF=0.69;AN=2;ASN_AF=0.42;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.92;LDAF=0.6742;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 45937267 rs10742772 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 45945837 rs10838531 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.2233;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 45949534 rs939105 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.37;AMR_AF=0.65;AN=2;ASN_AF=0.35;AVGPOST=0.9987;ERATE=0.0029;EUR_AF=0.91;LDAF=0.5990;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 45949903 rs188560105 A G 100 PASS AA=A;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 45959669 rs10742773 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.68;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8853;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 45975130 rs3736508 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.0041;AMR_AF=0.23;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2088;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46105688 rs2932515 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.81;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9223;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 46401108 rs76583617 C G 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0045;RSQ=0.9320;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46701728 rs10838612 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.12;LDAF=0.2236;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46702160 rs4752927 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.54;AVGPOST=0.9968;ERATE=0.0007;EUR_AF=0.12;LDAF=0.2152;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46702920 rs4268467 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 46726747 rs144957649 G A 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0030;RSQ=0.9195;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +11 46744925 rs2070852 G C 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4471;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46745003 rs5896 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.57;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2452;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46842829 rs200773918 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46889713 rs2306026 T C 100 PASS AA=.;AC=1;AF=0.58;AFR_AF=0.43;AMR_AF=0.63;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.77;LDAF=0.5777;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46890165 rs3816614 C T 100 PASS AA=.;AC=1;AF=0.58;AFR_AF=0.43;AMR_AF=0.63;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.5777;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46890197 rs2290883 G A 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2464;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46897446 rs2306033 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2459;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46897995 rs964551 G T 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.5786;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46900659 rs2306028 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2455;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46907827 rs2306027 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.24;AMR_AF=0.63;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.77;LDAF=0.5325;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46911047 rs199674492 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46911457 rs2306035 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.23;AMR_AF=0.63;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.76;LDAF=0.5301;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46911704 rs2306036 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.68;AMR_AF=0.69;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.6713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 46911781 rs2306037 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2638;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 46914583 rs10838631 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 46914598 rs10769215 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 46916693 rs3751097 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.12;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0933;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47182985 rs3740693 G A 100 PASS AA=G;AC=1;AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0499;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47188314 rs4752820 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47193367 rs57323109 T G 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.30;AMR_AF=0.38;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.34;LDAF=0.4323;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47201924 rs11039119 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.32;AMR_AF=0.38;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4410;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47203904 rs10838664 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.25;LDAF=0.3479;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47204175 rs2279438 A T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.74;AMR_AF=0.69;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.75;LDAF=0.6307;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47238522 rs326212 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47259728 rs143049891 G A 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.0040;LDAF=0.0019;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47260319 rs901746 A G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.57;AMR_AF=0.39;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.31;LDAF=0.4941;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47266808 rs2242261 T G 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.39;AMR_AF=0.28;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.3565;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47269159 rs4752973 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.42;AMR_AF=0.28;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.20;LDAF=0.3894;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47270255 rs2167079 C T 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.57;AMR_AF=0.38;AN=2;ASN_AF=0.74;AVGPOST=0.9958;ERATE=0.0036;EUR_AF=0.31;LDAF=0.4956;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.12,-0.03 +11 47282024 rs2279238 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.36;AMR_AF=0.28;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.16;LDAF=0.3473;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47306585 rs1051006 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0017;EUR_AF=0.17;LDAF=0.3255;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47306628 rs3736101 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0731;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47312374 rs58023804 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2541;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47330991 rs41304347 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0727;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47331116 rs1017594 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47345916 rs2290149 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1042;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47346145 rs2290148 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.40;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.3464;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47350287 rs2305280 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.44;AMR_AF=0.33;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.25;LDAF=0.4042;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47350553 rs10838693 G C 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.58;AMR_AF=0.39;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.4831;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47380593 rs3740689 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.08;AMR_AF=0.50;AN=2;ASN_AF=0.45;AVGPOST=0.9953;ERATE=0.0041;EUR_AF=0.57;LDAF=0.4185;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.87 +11 47431728 rs2010519 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9962;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9431;RSQ=0.9777;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47431961 rs61000762 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.21;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2235;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47431966 rs755555 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.38;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2910;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47446292 rs55927797 A T 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3083;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47446729 rs149818746 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47460306 rs7126210 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.37;AMR_AF=0.66;AN=2;ASN_AF=0.63;AVGPOST=0.9846;ERATE=0.0082;EUR_AF=0.70;LDAF=0.5991;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47469439 rs7111873 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.38;AMR_AF=0.67;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6111;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47640367 rs76315325 T A 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9903;ERATE=0.0601;EUR_AF=0.16;LDAF=0.1623;RSQ=0.9680;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47640429 rs1064608 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2824;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47701528 rs12286721 C A 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.60;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.57;LDAF=0.6096;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47758152 rs59205786 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.20;AN=2;ASN_AF=0.32;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2241;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 47776047 rs7928954 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47786953 rs78592079 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0149;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 47813436 rs10742821 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47834592 rs7110289 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 47857168 rs2305982 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2207;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48145247 rs2270992 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.13;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.62;LDAF=0.4947;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48157869 rs2270994 T C 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.13;AMR_AF=0.66;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.62;LDAF=0.4982;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48166267 rs4752904 G C 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.08;AMR_AF=0.59;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4368;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48184974 rs11039553 T G 100 PASS AA=T;AC=2;AF=0.28;AFR_AF=0.05;AMR_AF=0.38;AN=2;ASN_AF=0.26;AVGPOST=0.9433;ERATE=0.0435;EUR_AF=0.39;LDAF=0.2725;RSQ=0.9255;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.700:-0.70,-0.26,-0.59 +11 48184983 rs2270990 G T 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.54;AMR_AF=0.80;AN=2;ASN_AF=0.78;AVGPOST=0.9970;ERATE=0.0011;EUR_AF=0.77;LDAF=0.7235;RSQ=0.9949;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48238421 rs10769329 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9845;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48267589 rs1503180 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9899;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48285842 rs1503193 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48285856 rs10838850 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.53;AMR_AF=0.74;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.6600;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48286231 rs10838851 T A 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.53;AMR_AF=0.74;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.75;LDAF=0.6599;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48286256 rs10838852 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.21;AMR_AF=0.58;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.58;LDAF=0.4583;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 48346681 rs78490540 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.48;AVGPOST=0.9985;ERATE=0.0088;EUR_AF=0.48;LDAF=0.4845;RSQ=0.9612;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48346729 rs73463990 G C 100 PASS AA=g;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 48346791 rs73463994 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0833;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48346822 rs73463997 A C 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48346843 rs73463998 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48346999 rs72473367 T G 100 PASS AA=t;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4997;RSQ=0.1726;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 48347014 rs72473368 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4997;RSQ=0.1495;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 48347023 rs67077733 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4999;RSQ=0.0698;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48347067 rs73464001 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5000;RSQ=0.1125;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48347100 rs73465905 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4999;RSQ=0.1233;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48347140 rs10838874 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.58;AMR_AF=0.48;AN=2;ASN_AF=0.56;AVGPOST=0.9973;ERATE=0.0170;EUR_AF=0.46;LDAF=0.5167;RSQ=0.9917;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 48347267 . T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48347492 rs79775762 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5000;RSQ=0.1722;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48347498 rs78309417 A T 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5000;RSQ=0.1875;SNPSOURCE=EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 48510654 rs7103557 A C 100 PASS AA=N;AC=2;AF=0.54;AFR_AF=0.37;AMR_AF=0.62;AN=2;ASN_AF=0.49;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5383;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +11 48510777 rs7103992 G A 100 PASS AA=N;AC=2;AF=0.54;AFR_AF=0.37;AMR_AF=0.62;AN=2;ASN_AF=0.49;AVGPOST=0.9968;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5371;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +11 49974371 rs28662375 G A 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9976;RSQ=0.9633;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +11 50003191 rs4598671 C A 100 PASS AA=.;AC=2;AF=0.51;AFR_AF=0.21;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5049;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.47,-0.00 +11 51516000 rs11246607 C T 100 PASS AA=.;AC=2;AF=0.47;AFR_AF=0.16;AMR_AF=0.60;AN=2;ASN_AF=0.53;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4687;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.93,-0.01 +11 51516036 rs11246608 G A 100 PASS AA=.;AC=2;AF=0.47;AFR_AF=0.18;AMR_AF=0.60;AN=2;ASN_AF=0.53;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.56;LDAF=0.4730;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.87,-0.06 +11 51516144 rs11246609 A G 100 PASS AA=.;AC=2;AF=0.63;AFR_AF=0.38;AMR_AF=0.76;AN=2;ASN_AF=0.74;AVGPOST=0.9091;ERATE=0.0471;EUR_AF=0.63;LDAF=0.6055;RSQ=0.8868;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.88,-0.06 +11 55111238 rs11229158 C A 100 PASS AA=a;AC=1;AF=0.44;AFR_AF=0.14;AMR_AF=0.57;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4434;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 55111584 rs10896659 A T 100 PASS AA=a;AC=1;AF=0.44;AFR_AF=0.14;AMR_AF=0.57;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4424;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 55135435 rs1425193 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2586;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 55322211 rs9804659 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2778;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55339652 rs1459101 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2773;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55339798 rs557667 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2833;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55339829 rs557590 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.71;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8857;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55340379 rs559449 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.27;AMR_AF=0.60;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.56;LDAF=0.4981;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55340586 rs191364677 C G 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55433040 rs11230600 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2774;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55541098 rs297118 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55563776 rs297054 T G 100 PASS AA=N;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9744;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55563900 rs297055 T C 100 PASS AA=t;AC=1;AF=0.24;AFR_AF=0.35;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2399;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 55587117 rs297082 T A 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55587511 rs297081 A G 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55587914 rs55832853 A G 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.35;AN=2;ASN_AF=0.37;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.29;LDAF=0.2642;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55595081 rs7102394 C T 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.27;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1216;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 55595324 rs7102663 C T 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.26;AMR_AF=0.09;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1201;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 55606302 rs6591699 G T 100 PASS AA=.;AC=2;AF=0.68;AFR_AF=0.65;AMR_AF=0.69;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.62;LDAF=0.6783;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55606693 rs6591700 G A 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.28;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1257;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 55606818 rs11231253 C T 100 PASS AA=.;AC=1;AF=0.43;AFR_AF=0.29;AMR_AF=0.50;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.36;LDAF=0.4351;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55681336 rs11231529 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.34;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2866;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 55681494 rs2457239 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55761221 rs2449134 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9749;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55761736 rs200555184 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55761738 rs2128152 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 55798152 rs1482011 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55860780 rs1842700 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9799;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55861760 rs11523504 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.24;AMR_AF=0.26;AN=2;ASN_AF=0.16;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2519;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.10 +11 55872876 rs2512961 C T 100 PASS AA=t;AC=2;AF=0.95;AFR_AF=0.97;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9829;ERATE=0.0028;EUR_AF=0.90;LDAF=0.9447;RSQ=0.8906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 55873024 rs2449148 A G 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 55873368 rs1842696 G A 100 PASS AA=a;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9989;RSQ=0.8780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.60,-0.00 +11 55873475 rs2170447 C T 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2502;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 55890257 rs1842691 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9966;RSQ=0.5483;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.87,-0.00 +11 55944048 rs10896103 G C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.77;AMR_AF=0.74;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.67;LDAF=0.7403;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56000403 rs10791893 C G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.79;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.9003;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56000600 rs3919907 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2340;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56043604 rs12360890 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.61;AVGPOST=0.9880;ERATE=0.0103;EUR_AF=0.34;LDAF=0.3980;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56043702 rs7125697 G C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.76;AMR_AF=0.74;AN=2;ASN_AF=0.81;AVGPOST=0.9993;ERATE=0.0020;EUR_AF=0.67;LDAF=0.7389;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56058197 rs1842674 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.53;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.36;LDAF=0.4068;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56086147 rs960193 T G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.77;AMR_AF=0.82;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7618;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56113516 rs1905055 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.77;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7605;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56113575 rs10896271 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.60;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56113593 rs10896272 C A 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.19;AMR_AF=0.59;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4332;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56127746 rs7942390 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.80;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9702;ERATE=0.0426;EUR_AF=0.81;LDAF=0.8161;RSQ=0.9389;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 56128081 rs10896290 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.23;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2400;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +11 56128524 rs7928704 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8880;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 56143156 rs11228165 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.50;AMR_AF=0.66;AN=2;ASN_AF=0.69;AVGPOST=0.9902;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5874;RSQ=0.9721;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56143158 rs11228166 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.50;AMR_AF=0.66;AN=2;ASN_AF=0.69;AVGPOST=0.9908;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5867;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56143434 rs10791961 C G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.53;AMR_AF=0.31;AN=2;ASN_AF=0.31;AVGPOST=0.9873;ERATE=0.0259;EUR_AF=0.46;LDAF=0.4151;RSQ=0.9791;SNPSOURCE=EXOME;THETA=0.0063;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56143592 . C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.43;AVGPOST=0.9960;ERATE=0.0373;EUR_AF=0.29;LDAF=0.3190;RSQ=0.9881;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56143966 rs12291978 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.24;AMR_AF=0.21;AN=2;ASN_AF=0.25;AVGPOST=0.9822;ERATE=0.0144;EUR_AF=0.30;LDAF=0.2637;RSQ=0.9650;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56143977 rs12272403 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.52;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9878;ERATE=0.0034;EUR_AF=0.38;LDAF=0.3507;RSQ=0.9815;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56184888 rs998544 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4274;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56185159 rs7930678 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.51;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2783;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56185327 rs7933772 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.51;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2747;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56185345 rs6591324 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.70;AMR_AF=0.80;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7555;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 56185689 rs7931261 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.51;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2788;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56409603 rs11606499 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.26;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1239;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56431216 rs11228710 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.24;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6244;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56467816 rs78119960 G T 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.47;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4777;RSQ=0.9478;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56467819 rs78036340 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.47;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4783;RSQ=0.9506;SNPSOURCE=EXOME;THETA=0.0144;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56467833 rs73474897 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4995;RSQ=0.4285;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56467926 rs1704284 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0499;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56467945 rs36184181 G T 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.45;AN=2;ASN_AF=0.43;AVGPOST=0.9992;ERATE=0.0114;EUR_AF=0.40;LDAF=0.3543;RSQ=0.9974;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468020 rs532637 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.76;AMR_AF=0.51;AN=2;ASN_AF=0.46;AVGPOST=0.9985;ERATE=0.0022;EUR_AF=0.53;LDAF=0.5586;RSQ=0.9962;SNPSOURCE=EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56468048 rs2865520 C T 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.91;AVGPOST=0.9928;ERATE=0.0007;EUR_AF=0.93;LDAF=0.9356;RSQ=0.9695;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 56468155 rs11228732 T G 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2817;RSQ=0.9972;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56468259 rs503776 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5004;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468368 rs11228733 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4940;RSQ=0.9894;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468403 rs11228734 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4928;RSQ=0.9634;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468416 rs11228735 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4896;RSQ=0.9726;SNPSOURCE=EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468493 rs10792053 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.56;AMR_AF=0.51;AN=2;ASN_AF=0.49;AVGPOST=0.9983;ERATE=0.0037;EUR_AF=0.50;LDAF=0.5130;RSQ=0.9797;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468554 rs12420076 A C 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.48;AVGPOST=0.9975;ERATE=0.0024;EUR_AF=0.50;LDAF=0.5090;RSQ=0.9723;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468560 rs10896516 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.43;AMR_AF=0.44;AN=2;ASN_AF=0.40;AVGPOST=0.9956;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4066;RSQ=0.9843;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468561 rs10896517 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.43;AMR_AF=0.44;AN=2;ASN_AF=0.40;AVGPOST=0.9959;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4067;RSQ=0.9850;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468637 rs76884192 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4926;RSQ=0.9602;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56468638 rs7121276 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.19;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0020;EUR_AF=0.13;LDAF=0.1048;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56468646 rs78493274 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4922;RSQ=0.9710;SNPSOURCE=EXOME;THETA=0.0193;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 56510623 rs513873 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.23;AMR_AF=0.15;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2034;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 56510672 rs577576 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9890;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 56510694 rs1397053 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.21;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.1439;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 57004344 rs948847 G T 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.42;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0032;EUR_AF=0.58;LDAF=0.5769;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57080882 rs145672238 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0173;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57081197 rs4939134 G C 100 PASS AA=g;AC=2;AF=0.50;AFR_AF=0.10;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=0.9973;ERATE=0.0029;EUR_AF=0.57;LDAF=0.4991;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.70,-0.00 +11 57117385 rs2276042 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4282;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57137371 rs2276039 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.63;AVGPOST=0.9989;ERATE=0.0017;EUR_AF=0.40;LDAF=0.3957;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57137424 rs2276038 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.09;AMR_AF=0.44;AN=2;ASN_AF=0.69;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.40;LDAF=0.4142;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57147016 rs540687 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9616;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57148175 rs669661 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9621;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57155001 rs536455 G A 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.60;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9031;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57155288 rs630396 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9541;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +11 57157405 rs490358 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.60;AMR_AF=0.80;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7216;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57243588 rs2258835 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.76;AN=2;ASN_AF=0.87;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8163;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57244296 rs141304388 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0063;RSQ=0.8136;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 57268808 rs150660444 G T 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0004;LDAF=0.0173;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57379170 rs2511988 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4930;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 57463500 rs1783978 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6732;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57509429 rs635663 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9486;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.18,-0.00 +11 57509690 rs17152073 G A 100 PASS AA=G;AC=1;AF=0.07;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9957;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0678;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57563991 rs10896644 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.10;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2715;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 57571232 rs11229137 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9965;RSQ=0.9323;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57799371 rs1374570 G C 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.50;AMR_AF=0.58;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.54;LDAF=0.4703;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 57958775 rs7120468 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.22;AMR_AF=0.38;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.4027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57971195 rs11229279 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.31;LDAF=0.4086;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57971201 rs11229280 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.47;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4868;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57982229 rs1966836 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.37;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.66;LDAF=0.6512;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57982584 rs1966835 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.76;AVGPOST=0.9987;ERATE=0.0008;EUR_AF=0.41;LDAF=0.4952;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57982620 rs1966834 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.76;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4963;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57982726 rs1993089 G T 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.23;AMR_AF=0.49;AN=2;ASN_AF=0.72;AVGPOST=0.9907;ERATE=0.0086;EUR_AF=0.36;LDAF=0.4477;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57982763 rs1993088 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.23;AMR_AF=0.48;AN=2;ASN_AF=0.71;AVGPOST=0.9906;ERATE=0.0114;EUR_AF=0.35;LDAF=0.4404;RSQ=0.9896;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57982832 rs2867400 T A 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.72;AVGPOST=0.9883;ERATE=0.0100;EUR_AF=0.36;LDAF=0.4505;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57982896 rs2903566 G T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.51;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4948;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57983194 rs7103033 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4137;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 57996084 rs61902844 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2847;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 57996312 rs4245219 C G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9493;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 58034543 rs10792156 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.52;AMR_AF=0.50;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.5032;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 58125620 rs4127353 T C 100 PASS AA=c;AC=2;AF=0.71;AFR_AF=0.67;AMR_AF=0.75;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.63;LDAF=0.7139;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 58126305 rs4939208 A T 100 PASS AA=a;AC=2;AF=0.71;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.63;LDAF=0.7075;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 58170780 rs17152659 T A 100 PASS AA=t;AC=1;AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0475;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 58190136 rs4298923 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.74;AMR_AF=0.43;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4735;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 58207204 rs4938895 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9912;RSQ=0.9430;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 58318619 rs1047979 C G 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.27;AMR_AF=0.58;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.56;LDAF=0.5238;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 58378382 rs2245938 G C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.73;AMR_AF=0.42;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0015;EUR_AF=0.45;LDAF=0.4799;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 58381686 rs1938596 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.73;AMR_AF=0.42;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0014;EUR_AF=0.45;LDAF=0.4809;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 58391501 rs1800169 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1243;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 58478026 rs675423 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7029;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 58478039 rs675757 T C 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7034;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 58478084 rs675815 T C 100 PASS AA=t;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9415;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 58715285 rs565355 C T 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2879;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 58978258 rs17153442 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0050;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 59132798 rs7941190 G C 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.52;AMR_AF=0.71;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6644;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 59132882 rs10896964 A G 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6887;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 59189405 rs9988824 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.75;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8997;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 59211188 rs6591536 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6247;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 59211265 rs7941591 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6242;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 59224720 rs1453543 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9072;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 59480951 rs499033 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.92;LDAF=0.9628;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 59603364 rs2867802 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0283;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 59608814 rs148960211 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 59623378 rs34324219 C A 100 PASS AA=c;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.08;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0686;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 59830103 rs481950 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.34;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5626;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 59831716 rs1151065 C A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.27;AMR_AF=0.21;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 59837097 rs528823 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.29;AMR_AF=0.21;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2477;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 59940599 rs7232 T A 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.37;LDAF=0.1970;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 60073597 rs4644658 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9346;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60073702 rs3018806 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60102384 rs2304935 A G 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2971;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60102396 rs2304934 A G 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2975;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60102507 rs2304933 G T 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2966;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60105199 rs2289614 G C 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.19;AMR_AF=0.32;AN=2;ASN_AF=0.13;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2333;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60107470 rs2289612 C A 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.27;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.9947;ERATE=0.0171;EUR_AF=0.48;LDAF=0.3841;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0276;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60152563 rs950803 T A 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.51;AMR_AF=0.68;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6120;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60157107 rs2233252 T G 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.56;AMR_AF=0.69;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6248;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60164204 rs2241920 G A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.56;AMR_AF=0.69;AN=2;ASN_AF=0.61;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6261;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60182970 rs7131283 A T 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.55;AMR_AF=0.68;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5992;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60184191 rs3825020 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.52;AMR_AF=0.62;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5393;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60201232 rs3763845 T C 100 PASS AA=T;AC=2;AF=0.20;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60264755 rs2298551 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.67;AMR_AF=0.62;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5960;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60264947 rs2298552 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.65;AMR_AF=0.62;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60265002 rs2298553 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.50;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4543;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60268679 rs2186918 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60271325 rs2298556 A T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.61;AMR_AF=0.60;AN=2;ASN_AF=0.59;AVGPOST=0.9940;ERATE=0.0090;EUR_AF=0.49;LDAF=0.5587;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60274640 rs2298559 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.55;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4051;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60285575 rs10736706 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9502;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60291413 rs6591595 C T 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.60;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7431;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60309947 rs4939400 A T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.77;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9470;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +11 60310083 rs11230378 A T 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.34;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2797;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60531264 rs12363342 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.22;AMR_AF=0.32;AN=2;ASN_AF=0.17;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.35;LDAF=0.2712;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 60559805 rs931861 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.48;AMR_AF=0.74;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7408;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 60561613 rs751026 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.30;AMR_AF=0.51;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5538;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 60610056 rs2074421 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.06;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0908;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60610065 rs2074420 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3368;RSQ=0.9997;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 60617646 rs495949 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9872;RSQ=0.9486;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60617834 rs530963 C A 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.57;AMR_AF=0.67;AN=2;ASN_AF=0.91;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.56;LDAF=0.6733;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 60620585 rs2467642 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9868;RSQ=0.9080;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.22,-0.00 +11 60620590 rs2428461 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9779;ERATE=0.0033;EUR_AF=0.99;LDAF=0.9737;RSQ=0.6938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +11 60635091 rs550479 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9652;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60637164 rs489172 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.82;AMR_AF=0.85;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.81;LDAF=0.7072;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60638461 rs10897122 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.03;AMR_AF=0.26;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2963;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 60638470 rs566411 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60666116 rs3763841 G T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.40;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3236;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60666341 rs3763840 G A 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.40;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3228;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60673868 rs17155470 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=0.9967;ERATE=0.0011;EUR_AF=0.39;LDAF=0.3619;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +11 60689445 rs555835 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.56;AMR_AF=0.69;AN=2;ASN_AF=0.93;AVGPOST=0.9807;ERATE=0.0213;EUR_AF=0.60;LDAF=0.6880;RSQ=0.9715;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60695301 rs575123 C A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.52;AMR_AF=0.72;AN=2;ASN_AF=0.96;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7162;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.72,-0.00 +11 60695375 rs575955 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.52;AMR_AF=0.72;AN=2;ASN_AF=0.96;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7159;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +11 60698054 rs2074416 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.40;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3155;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60700991 rs512233 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.46;AMR_AF=0.45;AN=2;ASN_AF=0.32;AVGPOST=0.9981;ERATE=0.0007;EUR_AF=0.42;LDAF=0.4101;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-1.97 +11 60701136 rs9513 C G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.47;AMR_AF=0.45;AN=2;ASN_AF=0.32;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4131;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +11 60701987 rs7715 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.50;AMR_AF=0.45;AN=2;ASN_AF=0.32;AVGPOST=0.9904;ERATE=0.0014;EUR_AF=0.42;LDAF=0.4168;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +11 60703777 rs55920775 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.23;LDAF=0.2967;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 60704213 rs2469887 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.47;AMR_AF=0.45;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4123;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.92 +11 60705454 rs2905692 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9942;RSQ=0.9616;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60775007 rs4939485 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.09;AMR_AF=0.41;AN=2;ASN_AF=0.56;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.28;LDAF=0.3318;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.56,-0.01 +11 60776334 rs2905518 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9986;RSQ=0.8957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +11 60783135 rs3019557 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 60892606 rs637186 A G 100 PASS AA=G;AC=1;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9598;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 60893322 rs574843 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0425;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 60899815 rs2232142 A T 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0422;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.55 +11 61106525 rs2512809 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.33;AMR_AF=0.92;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.97;LDAF=0.8171;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61106892 rs2513329 G C 100 PASS AA=g;AC=2;AF=0.82;AFR_AF=0.31;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8181;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61108974 rs2260655 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.38;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8345;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.36,-0.00 +11 61110169 rs4939514 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.40;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8428;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61112802 rs2305465 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.38;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8346;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61123965 rs76030461 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9949;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61179285 rs3019198 G A 100 PASS AA=g;AC=2;AF=0.76;AFR_AF=0.29;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7601;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61205434 rs879647 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.29;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7596;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61249383 rs3019200 C A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.52;AMR_AF=0.85;AN=2;ASN_AF=0.97;AVGPOST=0.9994;ERATE=0.0010;EUR_AF=0.82;LDAF=0.7978;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61253973 rs2957858 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.37;AMR_AF=0.77;AN=2;ASN_AF=0.97;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.84;LDAF=0.7581;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 61254376 rs3019188 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.63;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.85;LDAF=0.8240;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61490880 rs9735635 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.08;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2039;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61505168 rs198444 G A 100 PASS AA=g;AC=1;AF=0.53;AFR_AF=0.38;AMR_AF=0.47;AN=2;ASN_AF=0.83;AVGPOST=0.9993;ERATE=0.0022;EUR_AF=0.44;LDAF=0.5346;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61505583 rs2240287 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.08;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2033;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61505594 rs186296528 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.09;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0153;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61505696 rs198443 G T 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.39;AMR_AF=0.47;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5384;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.29,-0.31,-5.00 +11 61508074 rs11828739 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.27;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1903;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61511133 rs3741251 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9954;ERATE=0.0005;EUR_AF=0.18;LDAF=0.1460;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61511498 rs3741252 C T 100 PASS AA=c;AC=1;AF=0.22;AFR_AF=0.35;AMR_AF=0.06;AN=2;ASN_AF=0.37;AVGPOST=0.9889;ERATE=0.0006;EUR_AF=0.09;LDAF=0.2187;RSQ=0.9798;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61543499 rs174528 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.46;AMR_AF=0.60;AN=2;ASN_AF=0.42;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.39;LDAF=0.4499;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61545807 rs202245459 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61546888 rs34038946 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9957;ERATE=0.0003;LDAF=0.0131;RSQ=0.8718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.39 +11 61548559 rs509360 A G 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.12;AMR_AF=0.77;AN=2;ASN_AF=0.42;AVGPOST=0.9991;ERATE=0.0035;EUR_AF=0.69;LDAF=0.5047;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61549025 rs174533 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.04;AMR_AF=0.55;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3331;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61551356 rs174535 T C 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.14;AMR_AF=0.56;AN=2;ASN_AF=0.41;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.36;LDAF=0.3576;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 61605215 rs2072114 A G 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1993;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.24,-0.03 +11 61624885 rs526126 G C 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.25;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9955;ERATE=0.0223;EUR_AF=0.81;LDAF=0.6980;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61645967 rs174453 C G 100 PASS AA=.;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.29;AVGPOST=0.9984;ERATE=0.0012;EUR_AF=0.18;LDAF=0.2240;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61658629 rs693672 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.66;AMR_AF=0.54;AN=2;ASN_AF=0.72;AVGPOST=0.9809;ERATE=0.0028;EUR_AF=0.82;LDAF=0.7057;RSQ=0.9664;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.02,-1.38 +11 61658800 rs174465 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.13;AMR_AF=0.40;AN=2;ASN_AF=0.70;AVGPOST=0.9765;ERATE=0.0014;EUR_AF=0.69;LDAF=0.5187;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.950:-0.17,-0.50,-2.87 +11 61666737 rs149104663 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0118;RSQ=0.9689;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61672147 rs111902278 A C 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.04;AN=2;AVGPOST=0.9988;ERATE=0.0022;EUR_AF=0.08;LDAF=0.0539;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-0.83,-0.07,-5.00 +11 61672235 rs174473 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.35;AVGPOST=0.9989;ERATE=0.0019;EUR_AF=0.24;LDAF=0.3003;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61672265 rs174474 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.24;LDAF=0.2672;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61675714 rs34281659 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.07;LDAF=0.0333;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.84,-0.01,-5.00 +11 61675751 rs61898561 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0356;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.16 +11 61719387 rs1800007 T C 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.79;AMR_AF=0.53;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.6202;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61722645 rs1109748 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0010;EUR_AF=0.08;LDAF=0.2742;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61724292 rs760306 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.60;AMR_AF=0.38;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.5200;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61724514 rs195162 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.66;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61730036 rs149698 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.31;LDAF=0.1516;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61730234 rs58357769 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.35;LDAF=0.5439;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61731534 rs195155 G T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=0.94;AVGPOST=0.9825;ERATE=0.0497;EUR_AF=0.91;LDAF=0.9099;RSQ=0.9155;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61895741 rs1675131 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.32;AMR_AF=0.42;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.68;LDAF=0.3990;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61896215 rs1792946 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.42;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.68;LDAF=0.4013;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61897359 rs1675133 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.32;AMR_AF=0.42;AN=2;ASN_AF=0.09;AVGPOST=0.9894;ERATE=0.0041;EUR_AF=0.67;LDAF=0.3943;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61906374 rs1675126 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.91;AMR_AF=0.90;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7842;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 61908440 rs2277283 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2019;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 61913196 rs7129085 G T 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.24;AMR_AF=0.38;AN=2;ASN_AF=0.08;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.62;LDAF=0.3531;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.78,-0.01,-5.00 +11 61914369 rs35595038 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.0017;AVGPOST=0.9874;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0419;RSQ=0.8879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 61960827 rs2232941 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.33;AMR_AF=0.66;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6513;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62010863 rs2232950 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4621;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 62105441 rs3741245 T C 100 PASS AA=t;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.29;LDAF=0.2724;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62123989 rs67821209 T A 100 PASS AA=t;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2317;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62287497 rs148186265 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +11 62293948 rs486903 G A 100 PASS AA=g;AC=1;AF=0.47;AFR_AF=0.08;AMR_AF=0.65;AN=2;ASN_AF=0.29;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=0.76;LDAF=0.4668;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62380732 rs4387351 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.74;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9344;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.84,-0.00 +11 62381106 rs1799959 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.74;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9344;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 62384869 rs4963224 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0014;EUR_AF=1.00;LDAF=0.9964;RSQ=0.9141;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +11 62397177 rs948683 C G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9538;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 62430659 rs597259 T A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.58;AMR_AF=0.71;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7432;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 62439569 rs13941 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.54;AMR_AF=0.70;AN=2;ASN_AF=0.93;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7330;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +11 62459994 rs2850597 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.63;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.78;LDAF=0.7459;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 62489267 rs496032 C T 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.63;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7441;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 62549466 rs181124445 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0007;LDAF=0.0069;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62559501 rs11231221 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=0.9783;ERATE=0.0010;EUR_AF=0.08;LDAF=0.0838;RSQ=0.8921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-2.24,-0.00,-2.47 +11 62563353 rs539465 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9821;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 62652063 rs489381 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.65;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.91;LDAF=0.8072;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 62677220 rs2067480 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0947;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62678306 rs2067477 G T 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0947;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62766431 rs2276299 A T 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1900;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 62931484 rs6591771 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.60;AMR_AF=0.41;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5065;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62951221 rs11231397 C G 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4006;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 62984868 rs11231409 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63057925 rs1790218 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.28;AMR_AF=0.59;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.57;LDAF=0.4707;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63064823 rs576641 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5860;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63064970 rs575009 T G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.78;AMR_AF=0.66;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6220;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63067138 rs513338 T G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5858;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63072310 rs1201559 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.29;AMR_AF=0.60;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4771;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63258416 rs10897424 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9814;RSQ=0.9651;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.90,-0.06 +11 63278621 rs2239679 C G 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.08;AMR_AF=0.44;AN=2;ASN_AF=0.21;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.54;LDAF=0.3337;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0156;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 63313644 rs584905 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63487386 rs542998 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.45;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7851;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63585804 rs643634 C A 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.10;AMR_AF=0.59;AN=2;ASN_AF=0.70;AVGPOST=0.9987;ERATE=0.0026;EUR_AF=0.40;LDAF=0.4415;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63668557 rs224174 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63679369 rs320108 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9915;ERATE=0.0009;EUR_AF=1.00;LDAF=0.9551;RSQ=0.9301;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +11 63680045 rs320109 C A 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.31;AMR_AF=0.29;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.45;LDAF=0.3085;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 63680297 rs320110 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.55;AMR_AF=0.97;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8812;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63681513 rs10897461 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9789;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63681648 rs4980533 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.23;AMR_AF=0.69;AN=2;ASN_AF=0.89;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5868;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63682312 rs4375445 G C 100 PASS AA=c;AC=2;AF=0.88;AFR_AF=0.54;AMR_AF=0.97;AN=2;ASN_AF=0.96;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8802;RSQ=0.9969;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63713317 rs3740637 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.1865;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 63720086 rs4980513 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9817;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63767186 rs709594 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.72;AMR_AF=0.28;AN=2;ASN_AF=0.13;AVGPOST=0.9972;ERATE=0.0005;EUR_AF=0.44;LDAF=0.3951;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.05,-0.93 +11 63767249 rs11600062 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.04;AVGPOST=0.9964;ERATE=0.0007;EUR_AF=0.40;LDAF=0.1864;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +11 63883985 rs614397 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.22;AMR_AF=0.69;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.5698;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63884027 rs614035 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.15;AMR_AF=0.56;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4524;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63885305 rs3824854 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.27;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1682;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63885632 rs4379854 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9633;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63885704 rs677447 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.14;AMR_AF=0.55;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4470;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63885769 rs688241 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0633;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 63967770 rs11231722 C G 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.30;AMR_AF=0.56;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3807;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63970625 rs2070232 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0594;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 63979162 rs17851033 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0599;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 63986713 rs11603538 C A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.28;AMR_AF=0.43;AN=2;ASN_AF=0.27;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3200;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63986992 rs59250939 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0609;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 63988102 rs3802933 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.17;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1788;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63990505 rs78324705 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0608;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 63991801 rs1059440 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.29;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1707;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 63993287 rs11549691 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0612;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.33,-0.02,-5.00 +11 63997329 rs633561 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9528;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 63997338 rs633557 T C 100 PASS AA=N;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9652;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64003843 rs11603042 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.38;AN=2;ASN_AF=0.25;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.34;LDAF=0.2708;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64011441 rs654573 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9840;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64012225 rs605187 G C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9896;ERATE=0.0052;EUR_AF=1.00;LDAF=0.9528;RSQ=0.9273;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64012784 rs12798333 G A 100 PASS AA=g;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.18;LDAF=0.1740;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64022459 rs632439 A G 100 PASS AA=g;AC=2;AF=0.94;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=0.9801;ERATE=0.0161;EUR_AF=0.96;LDAF=0.9354;RSQ=0.8797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64024056 rs588177 C A 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.53;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4288;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64026144 rs2244625 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.53;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4316;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64026219 rs2244621 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.24;AMR_AF=0.30;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2921;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64027468 rs28395878 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0599;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.08 +11 64030944 rs2510067 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9698;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.42,-0.02 +11 64033748 rs28395880 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0595;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64066859 rs2232417 G A 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.48;AMR_AF=0.95;AN=2;ASN_AF=0.90;AVGPOST=0.9950;ERATE=0.0005;EUR_AF=1.00;LDAF=0.8469;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.22,-0.00 +11 64066999 rs953778 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.29;AN=2;ASN_AF=0.52;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=0.15;LDAF=0.2888;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64082437 rs650008 C T 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.54;AMR_AF=0.96;AN=2;ASN_AF=0.90;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8609;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.42,-0.00 +11 64085785 rs7938623 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9506;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +11 64088435 rs566049 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64107735 rs663743 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.35;AN=2;ASN_AF=0.16;AVGPOST=0.9950;ERATE=0.0005;EUR_AF=0.35;LDAF=0.2289;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 0|1:1.000:-3.14,-0.48,-0.18 +11 64109118 rs647152 T G 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.38;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3470;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64110668 rs574835 G A 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.38;LDAF=0.2592;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.38 +11 64110683 rs479552 G C 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.36;AMR_AF=0.37;AN=2;ASN_AF=0.27;AVGPOST=0.9972;ERATE=0.0005;EUR_AF=0.39;LDAF=0.3461;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.28 +11 64111928 rs685870 T C 100 PASS AA=N;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.68;LDAF=0.5232;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64116843 rs1318165 A C 100 PASS AA=N;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9721;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64124515 rs612448 T C 100 PASS AA=N;AC=1;AF=0.28;AFR_AF=0.04;AMR_AF=0.39;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2765;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64127744 rs521950 A G 100 PASS AA=N;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.38;AN=2;ASN_AF=0.22;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.45;LDAF=0.2886;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.39,-0.01,-1.71 +11 64136877 rs11606015 C G 100 PASS AA=N;AC=1;AF=0.26;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9848;ERATE=0.0014;EUR_AF=0.39;LDAF=0.2637;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.750:-0.06,-0.89,-5.00 +11 64137875 rs11606081 T C 100 PASS AA=N;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2651;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64138805 rs11542299 T C 100 PASS AA=N;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2646;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64138905 rs17857342 T G 100 PASS AA=t;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9965;ERATE=0.0007;EUR_AF=0.39;LDAF=0.2667;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.01,-1.49,-5.00 +11 64359286 rs3825016 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.23;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.70;LDAF=0.4137;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64360274 rs11231825 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4122;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64365943 rs79866595 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.12;AMR_AF=0.48;AN=2;ASN_AF=0.23;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.71;LDAF=0.4144;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.06 +11 64367325 rs1630320 A G 100 PASS AA=a;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9821;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64418900 rs526338 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.08;AMR_AF=0.47;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.4013;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64480641 rs2518907 G A 100 PASS AA=g;AC=1;AF=0.55;AFR_AF=0.25;AMR_AF=0.62;AN=2;ASN_AF=0.48;AVGPOST=0.9891;ERATE=0.0011;EUR_AF=0.77;LDAF=0.5514;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +11 64496357 rs2230414 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.14;AMR_AF=0.24;AN=2;ASN_AF=0.37;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1968;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.86 +11 64497189 rs533515 A C 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.47;AMR_AF=0.68;AN=2;ASN_AF=0.64;AVGPOST=0.9963;ERATE=0.0047;EUR_AF=0.87;LDAF=0.6883;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64503179 rs553618 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.73;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9364;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +11 64503363 rs10897524 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2363;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64503496 rs556356 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +11 64507315 rs550930 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.74;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9375;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64507680 rs547280 A C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.69;AMR_AF=0.97;AN=2;ASN_AF=0.97;AVGPOST=0.9693;ERATE=0.0121;EUR_AF=0.97;LDAF=0.9005;RSQ=0.8942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64514506 rs569602 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1878;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64519062 rs532747 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1747;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64520942 rs2959652 G T 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.37;AMR_AF=0.73;AN=2;ASN_AF=0.60;AVGPOST=0.9951;ERATE=0.0017;EUR_AF=0.92;LDAF=0.6779;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +11 64525216 rs589691 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.23;AMR_AF=0.70;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.6440;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64527080 rs477549 T C 100 PASS AA=t;AC=1;AF=0.26;AFR_AF=0.38;AMR_AF=0.24;AN=2;ASN_AF=0.39;AVGPOST=0.9983;ERATE=0.0018;EUR_AF=0.08;LDAF=0.2548;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64535357 rs575375 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9749;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 64536866 rs484886 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64544135 rs474707 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.24;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2367;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64557132 rs11231869 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.20;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1700;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +11 64559898 rs10897526 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.26;AMR_AF=0.42;AN=2;ASN_AF=0.74;AVGPOST=0.9926;ERATE=0.0133;EUR_AF=0.24;LDAF=0.4065;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +11 64563934 rs483544 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64564208 rs677298 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1556;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64572018 rs2959656 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.71;AMR_AF=0.90;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8460;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64572557 rs540012 A G 100 PASS AA=a;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64572602 rs2071313 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.40;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3095;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64577620 rs509606 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1758;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.06,-0.88,-5.00 +11 64594490 rs57772251 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8271;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +11 64597205 rs7936466 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.53;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2780;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.06 +11 64597574 rs12790925 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2790;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64598944 rs684071 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9955;RSQ=0.9551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 64601933 rs7933683 T C 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.53;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.24;LDAF=0.2801;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.10,-0.70,-5.00 +11 64604178 rs2904960 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9508;ERATE=0.0063;EUR_AF=0.98;LDAF=0.9615;RSQ=0.4814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +11 64606177 rs653343 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2706;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64607587 rs589984 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.13;LDAF=0.2708;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64621856 rs3897618 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64622869 rs10897533 G C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.49;AMR_AF=0.81;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.6979;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64645871 rs1211284 A G 100 PASS AA=a;AC=2;AF=0.67;AFR_AF=0.38;AMR_AF=0.81;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.6736;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64669417 rs682673 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64677293 rs656195 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9989;RSQ=0.4641;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +11 64680819 rs618006 G A 100 PASS AA=g;AC=1;AF=0.58;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.54;AVGPOST=0.9920;ERATE=0.0005;EUR_AF=0.74;LDAF=0.5849;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.36 +11 64700767 rs675090 G A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.80;AMR_AF=0.76;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7226;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64702200 rs673995 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.79;AMR_AF=0.74;AN=2;ASN_AF=0.60;AVGPOST=0.9987;ERATE=0.0031;EUR_AF=0.71;LDAF=0.7027;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64702815 rs2375087 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.30;AMR_AF=0.31;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2313;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64799894 rs678614 A C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5846;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64799998 rs534236 T C 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.27;AMR_AF=0.62;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.63;LDAF=0.4291;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64807294 rs653111 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.21;AMR_AF=0.62;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.63;LDAF=0.4156;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +11 64809090 rs12271134 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9820;ERATE=0.0020;EUR_AF=1.00;LDAF=0.9884;RSQ=0.3558;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.10,-0.47,-0.18 +11 64820654 rs477539 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.07;AMR_AF=0.60;AN=2;ASN_AF=0.18;AVGPOST=0.9936;ERATE=0.0004;EUR_AF=0.63;LDAF=0.3813;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.97,-0.05 +11 64882789 rs1129195 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.33;AMR_AF=0.56;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3822;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64883864 rs1706937 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4799;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64884052 rs1546532 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.91;AMR_AF=0.92;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9247;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64897453 rs1206196 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.30;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4743;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.10,-0.00,-5.00 +11 64900270 rs3825073 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1558;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64937683 rs17743381 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.09;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1670;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.06,-0.00 +11 64950970 rs17583 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.28;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2551;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64972286 rs10895991 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.20;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0951;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 64972354 rs2271450 A T 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.22;AMR_AF=0.42;AN=2;ASN_AF=0.43;AVGPOST=0.9894;ERATE=0.0026;EUR_AF=0.42;LDAF=0.3779;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 64977424 rs2271448 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.21;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9974;ERATE=0.0007;EUR_AF=0.33;LDAF=0.2859;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 64977937 rs542380 A G 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.42;AMR_AF=0.77;AN=2;ASN_AF=0.67;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6842;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65064656 rs201640265 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65143892 rs34400381 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0181;RSQ=0.9723;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65144075 rs624307 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9784;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65154464 rs142241454 C G 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0338;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65156839 rs142184687 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65161525 rs61740654 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0347;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65164357 rs12417665 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.06;AVGPOST=0.9906;ERATE=0.0023;EUR_AF=0.16;LDAF=0.1471;RSQ=0.9714;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:0.950:-0.19,-0.46,-2.43 +11 65302893 rs947791 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.19;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1773;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65338034 rs1151496 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.45;AMR_AF=0.23;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2895;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65347636 rs1194100 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9971;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9978;RSQ=0.4663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65349849 rs1194099 A T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.78;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9442;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65351074 rs10896018 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.07;AMR_AF=0.42;AN=2;ASN_AF=0.45;AVGPOST=0.9941;ERATE=0.0019;EUR_AF=0.27;LDAF=0.2955;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65357697 rs1151503 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.84;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.76;LDAF=0.8393;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65359625 rs4261292 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9952;RSQ=0.7495;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 65363275 rs3814752 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.18;AVGPOST=0.9937;ERATE=0.0013;EUR_AF=0.25;LDAF=0.2014;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65366847 rs10791820 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.27;LDAF=0.1924;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +11 65367253 rs4326800 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.10;AMR_AF=0.18;AN=2;ASN_AF=0.04;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.27;LDAF=0.1546;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.65,-4.70 +11 65383755 rs58950470 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9870;ERATE=0.0012;EUR_AF=0.35;LDAF=0.2346;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.68,-0.10 +11 65383896 rs7947140 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.0586;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65384727 rs12790427 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.26;AMR_AF=0.38;AN=2;ASN_AF=0.43;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3038;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65385606 rs1151489 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9971;RSQ=0.9143;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65386206 rs1193851 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.26;AN=2;ASN_AF=0.12;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2586;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65387012 rs57318451 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1106;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65392695 rs1205259 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2546;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65415028 rs4930157 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9769;ERATE=0.0021;EUR_AF=0.99;LDAF=0.9819;RSQ=0.4775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +11 65480791 rs551115 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9684;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65481166 rs1151500 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.73;AMR_AF=0.89;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8633;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65561468 rs644740 C T 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.33;AMR_AF=0.56;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 65562852 rs72922786 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.29;AN=2;ASN_AF=0.17;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1438;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +11 65623519 rs4621 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4475;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65628334 rs13817 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.67;LDAF=0.4476;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.01,-1.73 +11 65629932 rs659857 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.30;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4467;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65629934 rs545500 G C 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.30;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4467;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65630698 rs538394 T G 100 PASS AA=g;AC=1;AF=0.45;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4509;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65631167 rs648732 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4474;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65631973 rs630303 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4511;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65632262 rs558114 G T 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4475;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65635559 rs594689 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.11;AMR_AF=0.36;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3126;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65636053 rs601314 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.65;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9150;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65637984 rs630394 C G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.43;AMR_AF=0.52;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4823;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65638719 rs633800 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.11;AMR_AF=0.36;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3098;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65649774 rs604630 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9445;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65649984 rs687672 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.53;AMR_AF=0.79;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6846;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65650515 rs35461885 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1718;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65651830 rs658938 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.53;AMR_AF=0.79;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6820;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +11 65664346 rs637571 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.55;AMR_AF=0.60;AN=2;ASN_AF=0.79;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5842;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65667796 rs1058068 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.07;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9776;ERATE=0.0012;EUR_AF=0.44;LDAF=0.3979;RSQ=0.9671;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.050:-3.12,-0.47,-0.18 +11 65684929 rs9667389 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9710;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65685225 rs7947504 T C 100 PASS AA=t;AC=2;AF=0.91;AFR_AF=0.66;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9123;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65732651 rs550435 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.29;AMR_AF=0.56;AN=2;ASN_AF=0.57;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4582;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65732800 rs552130 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.57;AMR_AF=0.59;AN=2;ASN_AF=0.71;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5753;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65733289 rs556643 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.35;AMR_AF=0.58;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5127;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65733393 rs688862 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.38;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3565;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65735174 rs660118 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.06;AMR_AF=0.54;AN=2;ASN_AF=0.56;AVGPOST=0.9954;ERATE=0.0013;EUR_AF=0.44;LDAF=0.4042;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.900:-0.01,-1.75,-5.00 +11 65744247 rs622779 G A 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1574;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65744265 rs2276016 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1660;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.99 +11 65744275 rs543952 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.62;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7789;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.07,-0.82 +11 65767153 rs507672 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.55;AMR_AF=0.80;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7619;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65779590 rs1131544 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.13;AN=2;AVGPOST=0.9920;ERATE=0.0005;EUR_AF=0.15;LDAF=0.0807;RSQ=0.9600;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.68,-0.10 +11 65788072 rs3814747 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9342;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 65789137 rs34114713 C G 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2524;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65790527 rs2845570 G T 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.26;AMR_AF=0.49;AN=2;ASN_AF=0.43;AVGPOST=0.9870;ERATE=0.0369;EUR_AF=0.61;LDAF=0.4612;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 65793454 rs1203998 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.48;AMR_AF=0.40;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3707;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65793797 rs1893316 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2039;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65810209 rs61895584 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.55;AMR_AF=0.88;AN=2;ASN_AF=0.77;AVGPOST=0.9636;ERATE=0.0020;EUR_AF=0.85;LDAF=0.7644;RSQ=0.9277;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-0.89,-0.39,-0.33 +11 65810749 rs7937692 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=0.87;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9315;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 65824472 rs547404 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.33;AMR_AF=0.38;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2953;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 65826704 rs1049872 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2267;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66010633 rs524268 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 66031450 rs525698 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9781;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 66031660 rs1151539 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.26;AMR_AF=0.50;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3716;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.88,-0.00 +11 66033301 rs474005 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.26;AMR_AF=0.50;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3716;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 66050712 rs4073582 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.36;LDAF=0.1895;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66083129 rs3741367 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.52;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3480;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66083782 rs3741368 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.06;AMR_AF=0.51;AN=2;ASN_AF=0.24;AVGPOST=0.9943;ERATE=0.0035;EUR_AF=0.44;LDAF=0.3135;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66099987 rs1784029 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.25;AMR_AF=0.73;AN=2;ASN_AF=0.58;AVGPOST=0.9921;ERATE=0.0043;EUR_AF=0.67;LDAF=0.5648;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66100152 rs1784030 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9767;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 66101974 rs3016317 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.36;AMR_AF=0.89;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7687;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.11,-0.00 +11 66101978 rs10896110 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.28;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1998;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66103046 rs3016763 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9444;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +11 66107674 rs1784035 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 66108660 rs947978 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.24;AMR_AF=0.73;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5567;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66131906 rs7125100 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9757;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 66134085 rs8187658 C T 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1810;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +11 66188761 rs77600363 G T 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1883;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66206169 rs11110 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.21;AN=2;ASN_AF=0.30;AVGPOST=0.9924;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2654;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66258916 rs75546553 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.08;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.40;LDAF=0.3561;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66262806 rs10791878 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9840;ERATE=0.0108;EUR_AF=0.99;LDAF=0.9818;RSQ=0.6794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 66272142 rs1671063 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.92;AMR_AF=0.50;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6480;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66276576 rs12421620 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.21;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0494;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66299515 rs8432 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.91;AMR_AF=0.50;AN=2;ASN_AF=0.57;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6465;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66331458 rs572846 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.88;AMR_AF=0.46;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6143;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66333598 rs545009 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.88;AMR_AF=0.46;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6143;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66335548 rs1127894 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.84;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=0.9535;ERATE=0.0202;EUR_AF=0.51;LDAF=0.5726;RSQ=0.9379;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.51,-0.00,-5.00 +11 66358126 rs486584 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.11;AMR_AF=0.60;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4159;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66457681 rs35532855 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0125;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66468469 rs506028 A G 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.27;AMR_AF=0.13;AN=2;ASN_AF=0.29;AVGPOST=0.9936;ERATE=0.0075;EUR_AF=0.12;LDAF=0.1993;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 66469032 rs532439 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.55;AMR_AF=0.82;AN=2;ASN_AF=0.82;AVGPOST=0.9987;ERATE=0.0097;EUR_AF=0.76;LDAF=0.7377;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66472274 rs4930388 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9912;RSQ=0.9119;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +11 66481264 rs615536 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.77;AMR_AF=0.94;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8812;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 66483265 rs12805133 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.23;AMR_AF=0.57;AN=2;ASN_AF=0.41;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4106;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66626234 rs3741194 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=0.9924;ERATE=0.0006;EUR_AF=0.26;LDAF=0.1703;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +11 66833327 rs12287978 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3797;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66834252 rs2282502 C T 100 PASS AA=c;AC=1;AF=0.34;AFR_AF=0.13;AMR_AF=0.44;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3406;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 66837965 rs4930409 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 66995603 rs3741189 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.86;AMR_AF=0.96;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9383;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67034266 rs11227756 C A 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.21;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9837;ERATE=0.0030;EUR_AF=0.91;LDAF=0.6674;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.40 +11 67044850 rs3730140 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0526;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67049216 rs885833 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0530;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67050292 rs2071007 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.19;AMR_AF=0.68;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.91;LDAF=0.6634;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 67052466 rs10896164 G A 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.93;LDAF=0.7061;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 67071584 rs4244822 C G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.81;AMR_AF=0.95;AN=2;ASN_AF=0.88;AVGPOST=0.9767;ERATE=0.0045;EUR_AF=0.96;LDAF=0.8953;RSQ=0.9045;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.49,-0.17 +11 67072382 rs61731786 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.08;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0590;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67079177 rs1573536 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.10;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0622;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67120530 rs28364240 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0341;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.07,-0.81 +11 67164725 rs200201923 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67164791 rs872110 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.81;AMR_AF=0.32;AN=2;ASN_AF=0.27;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.09;LDAF=0.3344;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +11 67165015 rs2066494 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0539;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67171736 rs2514256 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.82;AMR_AF=0.32;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.08;LDAF=0.3347;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67176898 rs11227788 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.82;AMR_AF=0.32;AN=2;ASN_AF=0.26;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.09;LDAF=0.3375;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +11 67186271 rs868167 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.46;AMR_AF=0.22;AN=2;ASN_AF=0.03;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1505;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67191449 rs1790747 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.81;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.09;LDAF=0.3460;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67192107 rs1790748 T A 100 PASS AA=a;AC=1;AF=0.35;AFR_AF=0.81;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.09;LDAF=0.3466;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67196544 rs917570 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.21;AMR_AF=0.29;AN=2;ASN_AF=0.14;AVGPOST=0.9960;ERATE=0.0017;EUR_AF=0.42;LDAF=0.2781;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 67200819 rs4930427 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.37;AMR_AF=0.51;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4063;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67202044 rs1790752 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.77;AMR_AF=0.54;AN=2;ASN_AF=0.32;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4997;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.30,-0.00 +11 67202156 rs13859 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.77;AMR_AF=0.54;AN=2;ASN_AF=0.32;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.44;LDAF=0.5007;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.84,-0.00 +11 67202183 rs140071749 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.0405;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.81 +11 67205978 rs872375 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.37;AMR_AF=0.51;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4036;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67209515 rs111451405 C T 100 PASS AA=c;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0407;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67209869 rs80182011 T G 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0439;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67223920 rs1638564 C G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.85;AMR_AF=0.52;AN=2;ASN_AF=0.30;AVGPOST=0.9739;ERATE=0.0038;EUR_AF=0.42;LDAF=0.4957;RSQ=0.9684;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67223921 rs1638565 A C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.86;AMR_AF=0.52;AN=2;ASN_AF=0.30;AVGPOST=0.9777;ERATE=0.0017;EUR_AF=0.42;LDAF=0.4997;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67257823 rs641081 C A 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.50;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8834;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67258391 rs4930199 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +11 67263767 rs618633 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9379;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67264679 rs2276120 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.21;AMR_AF=0.48;AN=2;ASN_AF=0.17;AVGPOST=0.9913;ERATE=0.0054;EUR_AF=0.40;LDAF=0.3120;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +11 67351297 rs8191439 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.0040;LDAF=0.0454;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-2.52,-0.06,-0.90 +11 67352256 rs762803 C A 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9979;ERATE=0.0013;EUR_AF=0.41;LDAF=0.3228;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 67352689 rs1695 A G 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.44;AMR_AF=0.43;AN=2;ASN_AF=0.17;AVGPOST=0.9965;ERATE=0.0028;EUR_AF=0.32;LDAF=0.3249;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67353844 rs1871042 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2517;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 67353970 rs4891 T C 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.48;AMR_AF=0.43;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3362;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67374581 rs1871043 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.66;AMR_AF=0.51;AN=2;ASN_AF=0.19;AVGPOST=0.9954;ERATE=0.0005;EUR_AF=0.37;LDAF=0.4123;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.07,-0.04 +11 67401635 rs12787511 G C 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.18;AMR_AF=0.39;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2395;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67402362 rs3758938 T G 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.18;AMR_AF=0.39;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2400;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67414492 rs948445 C T 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.47;AMR_AF=0.86;AN=2;ASN_AF=0.77;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.82;LDAF=0.7329;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.71 +11 67430698 rs3741172 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0754;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 67430762 rs1551886 T C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.78;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8825;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67431110 rs1979376 G A 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.75;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8743;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67431914 rs17856219 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0785;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 67432854 rs6591270 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.77;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=0.9656;ERATE=0.0138;EUR_AF=0.97;LDAF=0.9191;RSQ=0.8594;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67433758 rs1551887 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.44;AMR_AF=0.85;AN=2;ASN_AF=0.77;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7241;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67433869 rs1551888 C T 100 PASS AA=T;AC=1;AF=0.88;AFR_AF=0.77;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8802;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67434010 rs1871032 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.05;AMR_AF=0.60;AN=2;ASN_AF=0.61;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4420;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67434416 rs4646823 C A 100 PASS AA=c;AC=1;AF=0.82;AFR_AF=0.55;AMR_AF=0.89;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8227;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 67799731 rs3133266 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67800494 rs3115545 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67814979 rs2471829 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9774;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 67816463 rs35089741 G C 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.18;AN=2;AVGPOST=0.9996;ERATE=0.0004;LDAF=0.0297;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 67957518 rs2512606 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68030173 rs3802746 C A 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.11;AMR_AF=0.49;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3374;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68131167 rs10791978 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.89,-0.00 +11 68133035 rs314776 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.69;AMR_AF=0.44;AN=2;ASN_AF=0.11;AVGPOST=0.9851;ERATE=0.0098;EUR_AF=0.38;LDAF=0.3871;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68157299 rs4988320 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1083;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68171013 rs545382 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.93;LDAF=0.8629;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68192690 rs556442 G A 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.20;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=0.9968;ERATE=0.0049;EUR_AF=0.72;LDAF=0.5869;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68456410 rs3136540 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.60;AMR_AF=0.71;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7445;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68458470 rs1042577 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.39;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6415;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68476011 rs4930597 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.53;AMR_AF=0.68;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7116;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68512543 rs12365708 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.12;LDAF=0.0681;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68548260 rs3019576 C A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.80;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9104;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68549340 rs2228502 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.80;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9104;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68560787 rs11228356 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0735;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68566839 rs3019603 G A 100 PASS AA=g;AC=2;AF=0.75;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.74;AVGPOST=0.9837;ERATE=0.0836;EUR_AF=0.78;LDAF=0.7544;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68671419 rs4930624 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1577;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.58,-0.00,-3.74 +11 68671477 rs1249463 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.59;AMR_AF=0.83;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.85;LDAF=0.7007;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.02 +11 68678962 rs560096 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.60;AMR_AF=0.83;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7033;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68682402 rs10896380 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1577;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68701948 rs11228413 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1677;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68703959 rs622082 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2231;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68704028 rs2236654 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.26;LDAF=0.1677;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68704264 rs546382 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2230;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68748003 rs34847539 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.80;AMR_AF=0.75;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6520;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68777323 rs11544721 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.39;AMR_AF=0.26;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3076;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68822739 rs1470892 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68825037 rs3750973 A C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.70;AMR_AF=0.70;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7606;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68834968 rs6591368 T C 100 PASS AA=c;AC=2;AF=0.91;AFR_AF=0.82;AMR_AF=0.93;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9125;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68840071 rs3750964 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0777;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 68840397 rs1466221 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.38;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3811;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68840412 rs1466220 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.38;AMR_AF=0.36;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0016;EUR_AF=0.46;LDAF=0.3789;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68846098 rs4930649 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7582;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68846519 rs7124310 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.76;AMR_AF=0.88;AN=2;ASN_AF=0.81;AVGPOST=0.9512;ERATE=0.0470;EUR_AF=0.88;LDAF=0.8304;RSQ=0.8760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 68851402 rs201584147 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68851414 rs2376558 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7577;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68851466 rs896973 G T 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.37;AMR_AF=0.36;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3774;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 68855363 rs3829241 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.05;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.36;LDAF=0.2354;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 69625511 rs7932320 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.39;AMR_AF=0.39;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4857;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 69954412 rs2509182 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9625;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 69957917 rs9666157 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.33;AN=2;ASN_AF=0.01;AVGPOST=0.9969;ERATE=0.0012;EUR_AF=0.23;LDAF=0.1946;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 69962642 rs2515245 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.79;AMR_AF=0.93;AN=2;ASN_AF=0.86;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.90;LDAF=0.8702;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.74,-0.01 +11 69970412 rs2509160 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.57;AMR_AF=0.78;AN=2;ASN_AF=0.73;AVGPOST=0.9969;ERATE=0.0005;EUR_AF=0.72;LDAF=0.6974;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 69999122 rs10160639 A C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.68;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7185;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 69999252 rs3781663 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.68;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7180;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 70007311 rs2276066 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.40;AMR_AF=0.57;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6161;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 70007392 rs2276067 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.58;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6655;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 70007484 rs2276068 C G 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.30;AMR_AF=0.46;AN=2;ASN_AF=0.72;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5124;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 70007865 rs2155461 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9918;RSQ=0.9589;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70049523 rs1131677 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.56;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=0.9928;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5681;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-1.97,-0.00,-4.10 +11 70118251 rs670012 T G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.83;AMR_AF=0.47;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4210;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70118489 rs546502 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.16;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=0.21;LDAF=0.1773;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70179672 rs2282481 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.64;AMR_AF=0.44;AN=2;ASN_AF=0.15;AVGPOST=0.9994;ERATE=0.0027;EUR_AF=0.34;LDAF=0.3743;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70194259 rs61887408 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.05;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0243;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 70200594 rs7943389 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.85;LDAF=0.9333;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +11 70208311 rs7130178 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.83;AMR_AF=0.47;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4193;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70208350 rs10751231 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70221160 rs140582605 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0156;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 70222604 rs664130 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1825;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70253389 rs2298396 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.08;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1731;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +11 70253475 rs2298397 C T 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1630;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +11 70253586 rs569732 T C 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.83;AMR_AF=0.44;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4419;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70260598 rs34053053 C T 100 PASS AA=C;AC=2;AF=0.09;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0905;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 70260609 rs7932550 T C 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2071;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 71146691 rs760241 A G 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.65;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8207;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71152258 rs736894 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.27;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3451;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71152461 rs949177 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.79;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.96;LDAF=0.8715;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71155153 rs1790334 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.79;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8707;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71174553 rs1629220 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3180;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71184678 rs7950441 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 71185479 rs2276354 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8684;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71185518 rs2186778 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8263;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71189436 rs2276353 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8679;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71238453 rs147685834 G C 100 PASS AA=N;AC=1;AF=0.23;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9920;ERATE=0.0019;EUR_AF=0.18;LDAF=0.2277;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.08 +11 71276632 rs36164574 T C 100 PASS AA=N;AC=2;AF=0.64;AFR_AF=0.85;AMR_AF=0.62;AN=2;ASN_AF=0.67;AVGPOST=0.9961;ERATE=0.0005;EUR_AF=0.49;LDAF=0.6365;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 71277273 rs66487667 T G 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.11;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1286;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 71498591 rs12270466 C G 100 PASS AA=.;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.36;AN=2;ASN_AF=0.29;AVGPOST=0.9436;ERATE=0.0021;EUR_AF=0.50;LDAF=0.3827;RSQ=0.9227;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-1.99,-0.00,-4.00 +11 71548492 rs12793731 C T 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.16;AVGPOST=0.9977;ERATE=0.0017;EUR_AF=0.49;LDAF=0.2902;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71548544 rs7120658 A G 100 PASS AA=.;AC=1;AF=0.47;AFR_AF=0.56;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=0.9717;ERATE=0.0303;EUR_AF=0.56;LDAF=0.4682;RSQ=0.9663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.44 +11 71640070 rs147232257 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0144;RSQ=0.9439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-2.30,-0.01,-2.11 +11 71714526 rs949324 G C 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.73;AMR_AF=0.80;AN=2;ASN_AF=0.77;AVGPOST=0.9772;ERATE=0.0452;EUR_AF=0.86;LDAF=0.7926;RSQ=0.9421;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 71714528 rs949323 T G 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.80;AMR_AF=0.85;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.97;LDAF=0.8797;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 71727422 rs1057992 A C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9031;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 71734211 rs2298457 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.69;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=0.9781;ERATE=0.0326;EUR_AF=0.88;LDAF=0.7776;RSQ=0.9553;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 71932120 rs2508202 G C 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.24,-0.03 +11 71941212 rs2276048 A G 100 PASS AA=N;AC=1;AF=0.31;AFR_AF=0.50;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3082;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71941381 rs2276047 A G 100 PASS AA=N;AC=1;AF=0.37;AFR_AF=0.63;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9989;ERATE=0.0029;EUR_AF=0.24;LDAF=0.3654;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71941812 rs12361913 C T 100 PASS AA=N;AC=1;AF=0.29;AFR_AF=0.49;AMR_AF=0.27;AN=2;ASN_AF=0.27;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.18;LDAF=0.2861;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71944667 rs1006488 C T 100 PASS AA=c;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0142;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 71945332 rs61736312 A G 100 PASS AA=N;AC=1;AF=0.15;AFR_AF=0.29;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1467;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71946333 rs2276046 T C 100 PASS AA=N;AC=1;AF=0.13;AFR_AF=0.23;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1321;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71948536 rs11548491 C G 100 PASS AA=N;AC=1;AF=0.15;AFR_AF=0.29;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1466;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 71955067 rs140850664 C T 100 PASS AA=c;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9916;ERATE=0.0008;EUR_AF=0.01;LDAF=0.0394;RSQ=0.9105;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.03,-0.00,-4.40 +11 72040784 rs36049191 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.24;AMR_AF=0.10;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1175;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 72288664 rs1980090 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.83;AMR_AF=0.63;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6682;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 72291883 rs644698 C A 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 72291927 rs577536 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 72293039 rs379638 G A 100 PASS AA=g;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.64,-0.00 +11 72293602 rs4944557 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9593;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 72295906 rs452228 A G 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 72408266 rs2306614 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.10;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0937;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 72412675 rs11235574 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.48;AMR_AF=0.52;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4647;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 72423436 rs200862533 C T 100 PASS AA=C;AC=1;AF=0.0046;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0051;RSQ=0.9149;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 72466017 rs73543261 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=0.9987;ERATE=0.0004;LDAF=0.0180;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +11 72525484 rs188671842 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9953;ERATE=0.0006;LDAF=0.0154;RSQ=0.8810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|0:0.550:-0.11,-0.66,-4.70 +11 72532708 rs11235603 C T 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9953;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9945;RSQ=0.6625;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-3.02,-0.46,-0.18 +11 72695114 rs17131809 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0119;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 72945341 rs2511241 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.89;AMR_AF=0.94;AN=2;ASN_AF=0.89;AVGPOST=0.9984;ERATE=0.0061;EUR_AF=0.91;LDAF=0.9056;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 72946020 rs1783596 C T 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.60;AMR_AF=0.65;AN=2;ASN_AF=0.63;AVGPOST=0.9982;ERATE=0.0017;EUR_AF=0.56;LDAF=0.6013;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 72946140 rs3741156 G C 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.01;AMR_AF=0.36;AN=2;ASN_AF=0.55;AVGPOST=0.9983;ERATE=0.0007;EUR_AF=0.23;LDAF=0.2859;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 73357710 rs3741144 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9825;ERATE=0.0004;EUR_AF=0.11;LDAF=0.0732;RSQ=0.9077;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.45 +11 73441772 rs2037709 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.83;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0030;EUR_AF=0.93;LDAF=0.9267;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 73670645 rs653263 T C 100 PASS AA=t;AC=1;AF=0.59;AFR_AF=0.90;AMR_AF=0.60;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5932;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73681090 rs2306819 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.22;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2646;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73681135 rs72982975 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.33;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2382;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73689104 rs660339 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.42;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.42;LDAF=0.4315;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73715542 rs2075577 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.84;AMR_AF=0.54;AN=2;ASN_AF=0.46;AVGPOST=0.9991;ERATE=0.0009;EUR_AF=0.57;LDAF=0.5978;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73715666 rs2734828 G A 100 PASS AA=g;AC=1;AF=0.27;AFR_AF=0.33;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=0.9989;ERATE=0.0025;EUR_AF=0.25;LDAF=0.2648;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73717024 rs45613736 A T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.68;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9789;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4854;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73717025 rs1685325 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.67;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9794;ERATE=0.0005;EUR_AF=0.44;LDAF=0.4858;RSQ=0.9712;SNPSOURCE=LOWCOV,EXOME;THETA=0.0268;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73785326 rs4453265 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4749;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73789777 rs1726735 T G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.93;AMR_AF=0.50;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5937;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 73796917 rs826058 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.59;AMR_AF=0.38;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3537;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 74047683 rs1044782 A G 100 PASS AA=a;AC=2;AF=0.60;AFR_AF=0.35;AMR_AF=0.59;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5965;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74049569 rs3867270 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.22;AMR_AF=0.59;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5677;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74053547 rs592644 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.75;AMR_AF=0.68;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7253;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74054346 rs641271 G T 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.43;AMR_AF=0.61;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6203;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74085420 rs35170680 T G 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.28;AMR_AF=0.63;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6051;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +11 74329615 rs4944052 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.56;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3784;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 74407676 rs3819242 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.32;AMR_AF=0.60;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.72;LDAF=0.5539;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 74408384 rs10751240 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.85;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8094;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 74419357 rs1944937 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.69;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7673;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +11 74419378 rs7948433 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.10;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3944;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +11 74559446 rs4944960 G C 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.14;AMR_AF=0.44;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3419;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74559481 rs4944961 C T 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.11;AMR_AF=0.46;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3494;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 74563077 rs2304683 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3323;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74705696 rs544115 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.60;AMR_AF=0.79;AN=2;ASN_AF=0.77;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7494;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74862391 rs1944612 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9667;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +11 74877004 rs3740839 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.26;AMR_AF=0.40;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2712;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74880856 rs7125268 C A 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.43;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.19;LDAF=0.3186;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +11 74883577 rs12422149 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2030;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74904362 rs1621378 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 74978732 rs140226575 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0097;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 74994352 rs877711 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1400;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 75152243 rs571353 C T 100 PASS AA=t;AC=2;AF=0.71;AFR_AF=0.44;AMR_AF=0.71;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.71;LDAF=0.7049;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 75160183 rs61897374 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.88,-0.27,-0.34 +11 75160213 rs473462 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.28;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5864;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.74,-0.01,-5.00 +11 75160575 rs518611 G A 100 PASS AA=g;AC=1;AF=0.57;AFR_AF=0.20;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5685;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.00 +11 75277628 rs584961 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.96;AMR_AF=0.93;AN=2;ASN_AF=0.72;AVGPOST=0.9942;ERATE=0.0005;EUR_AF=0.89;LDAF=0.8677;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.62 +11 75277757 rs650241 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.46;AMR_AF=0.39;AN=2;ASN_AF=0.19;AVGPOST=0.9969;ERATE=0.0007;EUR_AF=0.29;LDAF=0.3211;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 75279846 rs649257 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3227;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 75282882 rs585821 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3212;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 75298797 rs1231128 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.34;AMR_AF=0.50;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3404;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 75718536 rs149698377 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0011;RSQ=0.8911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 75902571 rs2508779 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9939;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 75905800 rs1533767 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.14;AMR_AF=0.36;AN=2;ASN_AF=0.23;AVGPOST=0.9859;ERATE=0.0013;EUR_AF=0.26;LDAF=0.2431;RSQ=0.9719;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-0.36,-0.41,-0.76 +11 75917334 rs1879633 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.98;AVGPOST=0.9910;ERATE=0.0008;EUR_AF=0.75;LDAF=0.8342;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +11 76183924 rs4245443 A G 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.37;AMR_AF=0.72;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6060;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 76227182 rs2508740 G A 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.42;AMR_AF=0.73;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6476;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 76370792 rs4304809 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 76372052 rs3740779 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.62;AMR_AF=0.58;AN=2;ASN_AF=0.56;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5907;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 76372418 rs3740778 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.99;AMR_AF=0.79;AN=2;ASN_AF=0.74;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8460;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 76372564 rs10751259 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.66;AMR_AF=0.59;AN=2;ASN_AF=0.54;AVGPOST=0.9990;ERATE=0.0016;EUR_AF=0.60;LDAF=0.5960;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +11 76507692 rs1149621 T A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.86;AVGPOST=0.9819;ERATE=0.0007;EUR_AF=0.74;LDAF=0.8251;RSQ=0.9564;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +11 76637651 rs4379869 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.64;AMR_AF=0.51;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6380;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 76637680 rs4479014 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.20;AMR_AF=0.47;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5329;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 76637730 rs4604914 C G 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.18;AMR_AF=0.47;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5270;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 76687399 rs1517909 A C 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.66;AMR_AF=0.54;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6718;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 76701606 rs3740767 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.20;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5604;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 76709795 rs11237053 G A 100 PASS AA=g;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1668;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 76827223 rs11606456 G C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.50;AMR_AF=0.29;AN=2;ASN_AF=0.42;AVGPOST=0.9991;ERATE=0.0014;EUR_AF=0.29;LDAF=0.3707;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +11 76827360 rs11604536 A G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.48;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0009;EUR_AF=0.25;LDAF=0.3505;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +11 76944049 rs4945162 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3830;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 76944123 rs116543089 T A 100 PASS AA=T;AC=1;AF=0.0037;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0037;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 76954898 rs7104577 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.56;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4433;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 76979465 rs1618188 A C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.95;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7731;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77330747 rs75346522 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0452;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 77335982 rs2013296 C A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.92;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=0.9982;ERATE=0.0026;EUR_AF=0.71;LDAF=0.7747;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77378388 rs4945197 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.35;AMR_AF=0.19;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1933;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77378505 rs28930682 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.35;AMR_AF=0.19;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1933;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77690024 rs145646077 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 77734209 rs11237362 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.56;AMR_AF=0.82;AN=2;ASN_AF=0.57;AVGPOST=0.9915;ERATE=0.0017;EUR_AF=0.79;LDAF=0.6849;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +11 77790653 rs534418 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.90;AMR_AF=0.90;AN=2;ASN_AF=0.73;AVGPOST=0.9833;ERATE=0.0067;EUR_AF=0.82;LDAF=0.8251;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.55,-0.01 +11 77790655 rs8875 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1491;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.24 +11 77811990 rs1263505 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.95;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8259;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 77825320 rs665278 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.21;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1522;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 77832076 rs518624 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 77884782 rs230661 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.85;AMR_AF=0.68;AN=2;ASN_AF=0.50;AVGPOST=0.9982;ERATE=0.0279;EUR_AF=0.53;LDAF=0.6184;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0096;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 77909014 rs2510044 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.37;AVGPOST=0.9906;ERATE=0.0007;EUR_AF=0.16;LDAF=0.2032;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77920457 rs2256051 G A 100 PASS AA=a;AC=1;AF=0.31;AFR_AF=0.42;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=0.9969;ERATE=0.0010;EUR_AF=0.19;LDAF=0.3138;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.55,-0.00,-5.00 +11 77920563 rs2510045 G T 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.17;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2530;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77920863 rs2512527 C A 100 PASS AA=c;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.25;AN=2;ASN_AF=0.40;AVGPOST=0.9880;ERATE=0.0066;EUR_AF=0.16;LDAF=0.2168;RSQ=0.9746;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.33,-0.28 +11 77920930 rs2511188 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.43;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=0.9899;ERATE=0.0117;EUR_AF=0.24;LDAF=0.3368;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77921527 rs2512526 G C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=0.65;AVGPOST=0.9951;ERATE=0.0005;EUR_AF=0.96;LDAF=0.8805;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 77924870 rs2450138 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.17;AMR_AF=0.27;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2578;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77930345 rs2450122 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2578;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77930499 rs901104 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.25;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2236;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77931346 rs901103 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2451;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77936166 rs1385600 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.30;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3227;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77937800 rs2248407 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.35;AMR_AF=0.29;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2983;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 77961419 rs76853537 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0114;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 78189558 rs4944202 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.32;AMR_AF=0.29;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3015;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 78277277 rs10751296 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.59;AMR_AF=0.66;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6531;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 78279790 rs10501429 T G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7002;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 78372536 rs2277277 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.26;AMR_AF=0.47;AN=2;ASN_AF=0.19;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.67;LDAF=0.4199;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 78437182 rs689369 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.27;AMR_AF=0.24;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1839;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 78440736 rs512004 G C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.47;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=0.9975;ERATE=0.0029;EUR_AF=0.18;LDAF=0.2505;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 78498022 rs11237621 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.40;AVGPOST=0.9942;ERATE=0.0006;EUR_AF=0.10;LDAF=0.1984;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.74,-0.00,-5.00 +11 82443672 rs6592081 C G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.89;AMR_AF=0.54;AN=2;ASN_AF=0.68;AVGPOST=0.9958;ERATE=0.0008;EUR_AF=0.37;LDAF=0.5958;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.14,-0.03 +11 82561339 rs13306597 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.35;AMR_AF=0.29;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2436;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 82564357 rs17144337 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.37;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1257;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 82973004 rs8789 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.63;AMR_AF=0.36;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4342;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 82973045 rs645954 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.88;AMR_AF=0.53;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6833;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 82996986 rs494791 A C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.87;AMR_AF=0.53;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.68;LDAF=0.6649;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 83810113 rs3750917 T G 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.61;AMR_AF=0.79;AN=2;ASN_AF=0.74;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.90;LDAF=0.7771;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 83962251 rs7933566 A G 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.53;AMR_AF=0.74;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7114;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 84822798 rs601375 T G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.78;AMR_AF=0.65;AN=2;ASN_AF=0.93;AVGPOST=0.9934;ERATE=0.0019;EUR_AF=0.58;LDAF=0.7274;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.64,-0.00 +11 84822808 rs349058 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0252;RSQ=0.9829;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +11 85366762 rs2196168 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.43;AMR_AF=0.36;AN=2;ASN_AF=0.42;AVGPOST=0.9968;ERATE=0.0141;EUR_AF=0.22;LDAF=0.3452;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 85374993 rs1192 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9963;ERATE=0.0012;EUR_AF=0.09;LDAF=0.1775;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 85435730 rs550404 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.67;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.6294;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85436352 rs641393 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.63;LDAF=0.5499;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85436394 rs556669 T C 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.87;AMR_AF=0.62;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.66;LDAF=0.6779;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85436500 rs580459 T C 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.87;AMR_AF=0.62;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.6779;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85436699 rs598346 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.81;LDAF=0.9008;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 85436868 rs597480 G C 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.42;AMR_AF=0.54;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.63;LDAF=0.5507;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85447611 rs680498 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.83;AMR_AF=0.60;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.66;LDAF=0.6697;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85448679 rs17744245 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0215;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 85456703 rs647912 T C 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.49;AMR_AF=0.55;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5749;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85576127 rs36093844 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.27;AMR_AF=0.24;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2180;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85593529 rs17817308 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1019;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85626569 rs60185300 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.18;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.26;LDAF=0.1472;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85627108 rs7927222 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.18;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.1476;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 85692181 rs76719109 A C 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.60;AMR_AF=0.57;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0021;EUR_AF=0.58;LDAF=0.5973;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 85725937 rs592297 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.92;AMR_AF=0.74;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7884;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 85977117 rs10898460 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.71;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.84;LDAF=0.7820;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 86048477 rs201042989 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 86098680 rs292109 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.79;AMR_AF=0.51;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6462;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 86108819 rs117348514 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0110;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 86118683 rs61736174 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0129;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 86119342 rs77592703 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.08;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 86126317 rs34331151 G C 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0014;RSQ=0.9693;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 86126337 rs35587986 T G 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 86133784 rs1056194 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.83;AMR_AF=0.75;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.76;LDAF=0.7710;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 86133807 rs117575679 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0128;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 86159223 rs34662182 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0434;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 86209110 rs35059554 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0435;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 86868347 rs556139 C T 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.41;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4484;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 87006776 rs10792935 G A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.59;AMR_AF=0.53;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5727;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 87013438 rs2276102 G A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.56;AMR_AF=0.52;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5694;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 87032215 rs7112344 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 87908346 rs302647 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.27;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.35;LDAF=0.2674;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.22 +11 87908448 rs302646 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.76;AMR_AF=0.79;AN=2;ASN_AF=0.57;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7543;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 87908563 rs3812730 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2169;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 88027209 rs3888798 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 88027393 rs17594 A C 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 88033661 rs217116 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.91;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9122;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +11 88045583 rs217086 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.91;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9122;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 88242024 rs2941563 T G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.95;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9889;ERATE=0.0008;EUR_AF=0.93;LDAF=0.9534;RSQ=0.9034;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +11 88338165 rs3816649 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.69;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8556;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 88911696 rs1042602 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.31;AN=2;ASN_AF=0.0017;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.37;LDAF=0.1832;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 89133449 rs317139 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9965;RSQ=0.8136;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +11 89223616 rs490934 C G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8793;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 89224326 rs10830279 G A 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.17;AMR_AF=0.52;AN=2;ASN_AF=0.35;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4536;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0138;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +11 89224453 rs2289125 A C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.20;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9853;ERATE=0.0013;EUR_AF=0.77;LDAF=0.5533;RSQ=0.9803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.03,-0.04 +11 89531780 rs149578071 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=0.9223;ERATE=0.0148;EUR_AF=0.10;LDAF=0.1604;RSQ=0.7824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-2.45,-0.00,-3.19 +11 89868692 rs7109578 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.73;AMR_AF=0.54;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4845;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 89868755 rs10734123 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.72;AMR_AF=0.54;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4817;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 89880469 rs2186748 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.73;AMR_AF=0.54;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4835;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 89896457 rs489009 C T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.93;AMR_AF=0.65;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6191;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 89903334 rs3758754 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.69;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.36;LDAF=0.4740;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 89916053 rs9804494 C G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.58;AMR_AF=0.51;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4447;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 89916080 rs9804632 G C 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.58;AMR_AF=0.51;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4447;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 89935586 rs1045861 G T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.41;AMR_AF=0.68;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6340;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 89936093 rs3758757 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.34;AMR_AF=0.51;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4723;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 89939448 rs1943381 G A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.38;AMR_AF=0.68;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6262;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 93118515 rs3020057 G A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.79;AMR_AF=0.87;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8212;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 93141548 rs139654175 G T 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.0010;RSQ=0.9135;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 93141580 rs2259633 C A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.80;AMR_AF=0.87;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8248;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 93212161 rs2605594 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.63;AMR_AF=0.76;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0007;EUR_AF=0.67;LDAF=0.7602;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +11 93212254 rs2658797 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.61;AMR_AF=0.66;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6760;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 93517874 rs63618760 C G 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.26;AMR_AF=0.72;AN=2;ASN_AF=0.75;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6003;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.39 +11 93517886 rs2848477 G C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.26;AMR_AF=0.72;AN=2;ASN_AF=0.75;AVGPOST=0.9970;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5994;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.16 +11 93527219 rs657177 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9438;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 93534990 rs655699 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.16;AMR_AF=0.70;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.5694;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.00 +11 93754508 rs2511403 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.52;AMR_AF=0.83;AN=2;ASN_AF=0.75;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7428;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 93797619 rs1945783 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.66;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9191;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 93803717 rs1878799 C G 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.40;AMR_AF=0.96;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7981;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 93844034 rs7925817 G T 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.64;AMR_AF=0.71;AN=2;ASN_AF=0.61;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6499;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 93862493 rs1138800 A C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.89;AMR_AF=0.74;AN=2;ASN_AF=0.67;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7115;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 93886838 rs7928030 G C 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.50;AMR_AF=0.56;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4752;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 94113288 rs3740867 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1385;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 94197260 rs641936 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.36;LDAF=0.3929;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94212048 rs535801 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.19;AMR_AF=0.39;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.32;LDAF=0.3327;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94225920 rs497763 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.38;AMR_AF=0.48;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4598;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94231257 rs2509943 C G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.62;AMR_AF=0.52;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5443;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 94278713 rs2230274 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0754;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94301881 rs61065511 T C 100 PASS AA=t;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1190;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94320179 rs16920648 T G 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.27;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1499;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94320237 rs7110167 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.80;AMR_AF=0.47;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5206;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 94322352 rs11020845 A T 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1700;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 94322353 rs11020846 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1698;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 94326765 rs57607909 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.27;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2331;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 94335077 rs624184 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.16;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94337220 rs593690 C T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.89;AMR_AF=0.47;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5406;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 94533373 rs2303960 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2616;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94731759 rs3740853 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.31;AN=2;ASN_AF=0.62;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.24;LDAF=0.3229;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 94861491 rs599281 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.25;AMR_AF=0.50;AN=2;ASN_AF=0.62;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4528;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 94908658 rs11021065 G T 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.13;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2591;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 94963937 rs4753658 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.36;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.03;LDAF=0.1424;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.22 +11 95509037 rs3789960 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2706;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95512060 rs1150360 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.92;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5740;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95521648 rs1727165 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.92;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5736;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95562327 rs534488 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2692;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95564259 rs644799 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2701;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95580926 rs566204 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.37;LDAF=0.2689;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95657111 rs3824874 T G 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=0.9935;ERATE=0.0007;EUR_AF=0.38;LDAF=0.2737;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-0.11,-0.66,-4.70 +11 95712897 rs7123133 G T 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0949;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95713024 rs7123272 G A 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0900;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95713175 rs74393839 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0951;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 95724658 rs488398 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9810;ERATE=0.0093;EUR_AF=0.28;LDAF=0.3264;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0406;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 95825797 rs7931870 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.73;AMR_AF=0.49;AN=2;ASN_AF=0.18;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4933;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 96092376 rs10765801 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.63;AMR_AF=0.65;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.71;LDAF=0.6458;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 96106661 rs11021560 C G 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.31;AMR_AF=0.32;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3273;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 96116444 rs10831519 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.21;LDAF=0.2450;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 100863096 rs515552 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.21;LDAF=0.3518;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 100863354 rs471933 C A 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.3487;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 100909809 rs484389 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2916;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 100909991 rs500760 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2911;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 100922202 rs1042839 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0023;EUR_AF=0.19;LDAF=0.0957;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 100933412 rs1042838 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.0951;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 100998771 rs3740753 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9968;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0952;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 100999140 rs200322178 A T 100 PASS AA=A;AC=1;AF=0.0014;AFR_AF=0.0041;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 101347093 rs12366144 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.53;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2674;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 101375549 rs10501986 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.50;AMR_AF=0.40;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3932;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 101771248 rs3858418 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 101775663 rs1661409 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3550;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 101818728 rs11225080 A G 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.36;AMR_AF=0.33;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.42;LDAF=0.4161;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +11 101828884 rs143745013 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 101832478 rs7926728 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 101833644 rs7109233 C T 100 PASS AA=t;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 101857758 rs6590942 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9812;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 101868415 rs1783742 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.67;AMR_AF=0.47;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6006;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102098354 rs3858420 G C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.47;AMR_AF=0.37;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4096;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 102207681 rs57261191 A C 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0055;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102207851 rs1055088 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.68;AMR_AF=0.61;AN=2;ASN_AF=0.68;AVGPOST=0.9990;ERATE=0.0012;EUR_AF=0.62;LDAF=0.6483;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +11 102563739 rs1276289 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.21;AMR_AF=0.47;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4347;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 102567207 rs1276286 T A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.47;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4264;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 102573451 rs3809017 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.33;AMR_AF=0.16;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1930;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102576358 rs2846707 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.92;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7901;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102576375 rs1939015 G A 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.73;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7912;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102576382 rs12099177 G A 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1554;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102584104 rs35866072 T G 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.25;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0804;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102584207 rs33927742 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.25;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0804;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102584607 rs2509013 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.72;AMR_AF=0.60;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6352;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102586171 rs35638252 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102587062 rs3740938 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.0020;AMR_AF=0.11;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 102587180 rs35508510 G C 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.0020;AMR_AF=0.11;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1102;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 102593248 rs1940475 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.72;AMR_AF=0.54;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5891;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102595492 rs3765620 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.81;AMR_AF=0.59;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6330;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102647310 rs470154 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9287;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102663503 rs7125062 T C 100 PASS AA=t;AC=1;AF=0.40;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3967;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 102666043 rs491152 A G 100 PASS AA=g;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9351;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102666164 rs5031036 T C 100 PASS AA=t;AC=1;AF=0.08;AFR_AF=0.19;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0777;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102666316 rs470558 T C 100 PASS AA=c;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9351;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102668022 rs10488 C T 100 PASS AA=c;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0713;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 102668702 rs470358 T C 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.85;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9985;ERATE=0.0051;EUR_AF=0.61;LDAF=0.6503;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0136;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102709425 rs520540 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.58;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5985;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102711338 rs591058 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.69;AMR_AF=0.63;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6239;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102713046 rs3020919 C T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.23;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1838;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 102713447 rs41380244 G C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0530;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 102713465 rs602128 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5950;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 102713620 rs679620 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.71;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6280;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 103013954 rs2514006 G T 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.49;AMR_AF=0.75;AN=2;ASN_AF=0.78;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6916;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 103029373 rs688094 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=0.87;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9371;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +11 103029516 rs688906 A G 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.47;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6856;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.88 +11 103033914 rs657936 A T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.57;AMR_AF=0.74;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7092;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 103057048 rs658804 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.52;AMR_AF=0.66;AN=2;ASN_AF=0.53;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5807;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 103058126 rs586592 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.67;AMR_AF=0.67;AN=2;ASN_AF=0.53;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.62;LDAF=0.6191;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 103074349 rs631712 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.87;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9243;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +11 103082590 rs589623 G A 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.60;AMR_AF=0.83;AN=2;ASN_AF=0.79;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.80;LDAF=0.7557;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.37 +11 103091546 rs670464 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.95;AMR_AF=0.95;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9291;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 103104930 rs1784259 C A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.95;AMR_AF=0.95;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9291;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 103123999 rs648387 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.49;AMR_AF=0.34;AN=2;ASN_AF=0.47;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4205;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 103124135 rs11225634 T G 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.36;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1718;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 103128507 rs1346883 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.14;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0335;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 103128510 rs650238 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.40;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=0.9988;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2427;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 103152919 rs12574626 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.40;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1803;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 103174000 rs11225674 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1701;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 103175497 rs3758862 C T 100 PASS AA=T;AC=2;AF=0.18;AFR_AF=0.21;AMR_AF=0.22;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1764;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 103182774 rs79978663 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.21;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1408;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 103229027 rs2566913 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.25;AMR_AF=0.66;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5261;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.43 +11 103229110 rs2671333 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.25;AMR_AF=0.66;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5261;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 103270607 rs10895417 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.65;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5165;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 103870755 rs11226108 G C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.18;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1673;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 104819327 rs9507 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9598;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 104839222 rs658560 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.82;AMR_AF=0.60;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7116;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 104869708 rs523104 G C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.41;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5238;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 104877927 rs507879 T C 100 PASS AA=.;AC=1;AF=0.43;AFR_AF=0.63;AMR_AF=0.47;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4301;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104899817 rs505901 C A 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1188;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104900385 rs501192 C T 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1188;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104900488 rs580253 G A 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1188;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104901007 rs473549 C T 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1188;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104905047 rs539595 G A 100 PASS AA=.;AC=1;AF=0.14;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1381;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.51 +11 104912221 rs542571 T A 100 PASS AA=.;AC=1;AF=0.20;AFR_AF=0.42;AMR_AF=0.28;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1984;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104912458 rs1503391 A C 100 PASS AA=.;AC=1;AF=0.14;AFR_AF=0.18;AMR_AF=0.24;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1398;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104971210 rs1792771 C T 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.54;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=0.9832;ERATE=0.0255;EUR_AF=0.64;LDAF=0.5427;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104971257 rs12806837 G A 100 PASS AA=.;AC=1;AF=0.10;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0987;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 104972190 rs1792773 C T 100 PASS AA=.;AC=1;AF=0.60;AFR_AF=0.69;AMR_AF=0.62;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6023;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 105732731 rs2277279 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1134;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 105768983 rs609239 T C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1134;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 105782654 rs72978094 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1057;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 106579204 rs12420232 C A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4127;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 107197606 rs630693 G C 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.42;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.29;LDAF=0.3214;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 107286943 rs17106909 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0941;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 107299623 rs35968518 A C 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0882;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 107299631 rs659040 G A 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.1326;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 107402995 rs589788 A T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.57;AMR_AF=0.41;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.4370;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 107431637 rs662349 C A 100 PASS AA=a;AC=1;AF=0.43;AFR_AF=0.57;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9983;ERATE=0.0012;EUR_AF=0.38;LDAF=0.4251;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 107904646 rs10890800 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.40;AMR_AF=0.70;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6678;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 107917087 rs7117111 A G 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.40;AMR_AF=0.71;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6715;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 107925327 rs3847562 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9763;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 107925557 rs2271853 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1536;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 107948858 rs10890807 T A 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.07;AMR_AF=0.51;AN=2;ASN_AF=0.42;AVGPOST=0.9886;ERATE=0.0045;EUR_AF=0.41;LDAF=0.3490;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 107992325 rs3741055 T A 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9938;ERATE=0.0005;EUR_AF=0.33;LDAF=0.2905;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.44 +11 107992346 rs3741056 G C 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9951;ERATE=0.0006;EUR_AF=0.33;LDAF=0.3086;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.87,-0.01,-1.68 +11 108014799 rs10890819 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.39;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.34;LDAF=0.2889;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 108043988 rs2070661 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.63;AMR_AF=0.66;AN=2;ASN_AF=0.47;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5894;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 108093208 rs228589 A T 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.39;AMR_AF=0.64;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5268;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +11 108183167 rs659243 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 108380335 rs1943382 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 108380449 rs114567088 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +11 108381247 rs2640779 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3235;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 108384207 rs2846412 C T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.49;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6178;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 108409784 rs2640785 T A 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.31;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2916;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 108464209 rs2640738 T C 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4202;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 108722851 rs10890899 C G 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.05;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3926;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 109964187 rs7116896 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.52;AMR_AF=0.39;AN=2;ASN_AF=0.29;AVGPOST=0.9541;ERATE=0.0040;EUR_AF=0.31;LDAF=0.3626;RSQ=0.9245;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.00,-0.47,-0.18 +11 110030228 rs3802839 A G 100 PASS AA=A;AC=2;AF=0.09;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0855;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 110035262 rs1026608 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2463;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 110035301 rs1026607 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.34;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2683;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 110103924 rs111354355 A C 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4411;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 110306727 rs4754453 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.20;LDAF=0.1206;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 110451011 rs146021011 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 110452999 rs2008772 C A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.52;AMR_AF=0.88;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7628;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 110453009 rs4079590 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.45;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.80;LDAF=0.7446;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111368047 rs489078 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9854;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 111405090 rs2298739 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0116;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111420364 rs634679 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9726;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 111487106 rs571462 C G 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.23;AMR_AF=0.69;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6458;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111623088 rs4936675 T A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.89;AMR_AF=0.69;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7491;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 111635655 rs7106104 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2468;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 111724133 rs10502151 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.27;AN=2;ASN_AF=0.60;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3263;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111747297 rs7124696 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2715;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 111749265 rs3802845 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.27;AN=2;ASN_AF=0.60;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3255;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111749349 rs611010 A T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.94;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9084;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 111754574 rs1045282 A C 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2665;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 111781047 rs11603779 A C 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 111795085 rs7124407 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.15;AMR_AF=0.29;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3429;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111896324 rs2303436 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.59;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3776;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111897050 rs1974426 A T 100 PASS AA=a;AC=1;AF=0.41;AFR_AF=0.38;AMR_AF=0.33;AN=2;ASN_AF=0.57;AVGPOST=0.9547;ERATE=0.0199;EUR_AF=0.34;LDAF=0.4073;RSQ=0.9332;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111908162 rs627441 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.82;AMR_AF=0.36;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.5160;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111916647 rs10891314 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.29;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3469;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 111933088 rs10891315 A G 100 PASS AA=a;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.30;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3547;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 112020916 rs549908 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2340;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 112040027 rs360712 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1814;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 112064431 rs7105056 T C 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9593;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 112065434 rs10891338 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9803;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 112071294 rs12420140 G A 100 PASS AA=G;AC=2;AF=0.12;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1184;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 112087101 rs2676377 T A 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.39;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6498;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 112088499 rs2217401 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113194168 rs723077 A C 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.13;AMR_AF=0.44;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3675;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 113200709 rs2303380 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.70;AMR_AF=0.59;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.6247;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113211370 rs10891537 T G 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.08;AMR_AF=0.36;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.48;LDAF=0.2577;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113234679 rs719802 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.37;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9989;ERATE=0.0136;EUR_AF=0.64;LDAF=0.5331;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 113264272 rs17115439 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.39;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.68;LDAF=0.5704;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113264470 rs4938013 A C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.80;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6704;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113264511 rs11214596 C G 100 PASS AA=c;AC=2;AF=0.26;AFR_AF=0.03;AMR_AF=0.36;AN=2;ASN_AF=0.06;AVGPOST=0.9981;ERATE=0.0008;EUR_AF=0.53;LDAF=0.2644;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113268059 rs11604671 G A 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.06;AVGPOST=0.9962;ERATE=0.0019;EUR_AF=0.49;LDAF=0.2583;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113270015 rs4938016 G C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.43;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.67;LDAF=0.5509;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.82,-0.00 +11 113270160 rs2734849 A G 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.06;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.49;LDAF=0.2739;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.17,-0.00 +11 113270374 rs2734848 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.57;AMR_AF=0.83;AN=2;ASN_AF=0.96;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.81;LDAF=0.7987;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113283459 rs6277 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.04;AMR_AF=0.37;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.2737;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113283477 rs6275 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.32;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.68;LDAF=0.5273;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113561054 rs7110736 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.96;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7597;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113561057 rs7110738 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.96;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.63;LDAF=0.7592;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +11 113564012 rs11600570 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.07;AN=2;AVGPOST=0.9964;ERATE=0.0013;EUR_AF=0.10;LDAF=0.0510;RSQ=0.9697;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 113565322 rs17115841 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.21;AMR_AF=0.11;AN=2;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.07;LDAF=0.0924;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.38,-0.00,-3.85 +11 113566205 rs45515199 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.21;AMR_AF=0.09;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0847;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 113566207 rs4936279 C A 100 PASS AA=c;AC=1;AF=0.47;AFR_AF=0.81;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.29;LDAF=0.4738;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 113570385 rs11601425 C T 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0494;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 113570405 rs4936280 T C 100 PASS AA=N;AC=2;AF=0.76;AFR_AF=0.96;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7606;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +11 113576932 rs7926267 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.96;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.63;LDAF=0.7615;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113618470 rs2459977 T A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.95;LDAF=0.8976;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113618936 rs2271261 A T 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1344;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 113618968 rs2513584 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113644261 rs2136445 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.09;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0664;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 113670052 rs2459971 T A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113679119 rs2465647 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.66;AMR_AF=0.85;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8125;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113680018 rs2513581 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113724943 rs2513590 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0429;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 113802435 rs17116124 T C 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0453;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 113802600 rs45597437 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.08;AN=2;AVGPOST=0.9987;ERATE=0.0043;EUR_AF=0.04;LDAF=0.0472;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 113802601 rs1176746 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.93;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=0.9989;ERATE=0.0013;EUR_AF=0.59;LDAF=0.7255;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113803028 rs1176744 A C 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.50;AMR_AF=0.41;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3428;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 113803666 rs17116138 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0453;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 113803846 rs45562138 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0453;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 113803855 rs45595034 C A 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0452;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 114120999 rs670984 C T 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.21;AMR_AF=0.39;AN=2;ASN_AF=0.49;AVGPOST=0.9992;ERATE=0.0011;EUR_AF=0.41;LDAF=0.3819;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 114393652 rs10891692 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.25;AMR_AF=0.30;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3949;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 114441639 rs508631 A G 100 PASS AA=A;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0043;RSQ=0.9647;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 114441943 rs10891705 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.22;AMR_AF=0.29;AN=2;ASN_AF=0.67;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3857;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 114442103 rs550897 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.89;AMR_AF=0.53;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6188;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 115102224 rs11607928 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.38;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.46;LDAF=0.2688;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 116631690 rs3741300 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.14;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3259;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 116631707 rs3825041 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=1.00;AMR_AF=0.89;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8875;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 116633825 rs918144 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.65;AMR_AF=0.59;AN=2;ASN_AF=0.42;AVGPOST=0.9994;ERATE=0.0010;EUR_AF=0.46;LDAF=0.5144;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 116660813 rs619054 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.18;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1363;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 116661826 rs2072560 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=1.00;AMR_AF=0.89;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8912;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +11 116662579 rs651821 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.85;AMR_AF=0.87;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8413;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 116691675 rs675 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.09;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1051;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 116692334 rs5104 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=0.64;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.83;LDAF=0.7895;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 116693464 rs5092 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.85;AMR_AF=0.78;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7495;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 116701535 rs4520 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.73;AMR_AF=0.64;AN=2;ASN_AF=0.40;AVGPOST=0.9980;ERATE=0.0015;EUR_AF=0.71;LDAF=0.6221;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 116703640 rs5128 G C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.86;AMR_AF=0.84;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8088;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 116707684 rs2070665 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8195;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 116707708 rs199948046 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0006;RSQ=0.8138;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 116708020 rs5070 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.45;AMR_AF=0.54;AN=2;ASN_AF=0.26;AVGPOST=0.9955;ERATE=0.0043;EUR_AF=0.67;LDAF=0.4913;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.86,-0.01 +11 117034619 rs7122944 G T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.89;AMR_AF=0.83;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.86;LDAF=0.7711;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117059552 rs474339 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.35;AMR_AF=0.67;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5387;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117061467 rs17120419 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0207;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117064693 rs521171 C G 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.33;AMR_AF=0.64;AN=2;ASN_AF=0.37;AVGPOST=0.9883;ERATE=0.0076;EUR_AF=0.72;LDAF=0.5259;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117160347 rs539765 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117241760 rs2305826 T A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.60;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.5242;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117252489 rs897836 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.95;AMR_AF=0.90;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.93;LDAF=0.9146;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +11 117257876 rs2305829 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.18;LDAF=0.2228;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 117266312 rs2305830 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.28;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2911;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117266754 rs693147 A C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.63;AMR_AF=0.46;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5315;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117267884 rs573455 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.39;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.53;LDAF=0.4626;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117268074 rs77543424 C G 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0394;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117282742 rs67023719 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.06;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1300;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117282800 rs522885 G T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.96;AMR_AF=0.93;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9301;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117299015 rs2925768 T C 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.39;AMR_AF=0.50;AN=2;ASN_AF=0.23;AVGPOST=0.9123;ERATE=0.0710;EUR_AF=0.61;LDAF=0.4539;RSQ=0.8734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0260;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 117299039 rs3741283 G C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.57;AMR_AF=0.32;AN=2;ASN_AF=0.03;AVGPOST=0.9493;ERATE=0.0359;EUR_AF=0.31;LDAF=0.3066;RSQ=0.9230;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 117303242 rs60580523 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1755;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 117304196 rs2242133 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.16;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1736;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 117332343 rs2298766 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.27;LDAF=0.2416;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 117332352 rs588048 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9817;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117335722 rs538847 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.87;AMR_AF=0.65;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.50;LDAF=0.7116;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 117395497 rs55642294 C A 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.04;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2044;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +11 117693255 rs529623 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.20;AMR_AF=0.52;AN=2;ASN_AF=0.56;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.57;LDAF=0.4767;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.80,-0.00,-2.01 +11 117776471 rs3802873 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.27;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2471;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117781435 rs2155194 A G 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.88;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9233;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +11 117785260 rs4936410 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.19;AVGPOST=0.9964;ERATE=0.0008;EUR_AF=0.35;LDAF=0.2407;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117789345 rs61900347 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.08;AVGPOST=0.9215;ERATE=0.0607;EUR_AF=0.07;LDAF=0.1323;RSQ=0.6972;SNPSOURCE=EXOME;THETA=0.0105;VT=SNP GT:DS:GL 1|0:1.000:-2.08,-0.00,-3.52 +11 117864047 rs2256111 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.48;AMR_AF=0.56;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5242;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117866259 rs145034778 T A 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0011;RSQ=0.8802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +11 117869670 rs2229113 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8103;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117965530 rs2276122 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=0.35;LDAF=0.2929;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 117965595 rs2276123 C T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.16;AMR_AF=0.32;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2989;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 117982495 rs1941635 T G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9899;ERATE=0.0139;EUR_AF=0.96;LDAF=0.9611;RSQ=0.9074;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 117988082 rs642215 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8112;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118037813 rs8192613 G T 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.33;AMR_AF=0.49;AN=2;ASN_AF=0.79;AVGPOST=0.9981;ERATE=0.0025;EUR_AF=0.50;LDAF=0.5356;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +11 118065068 rs201241187 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 118067426 rs648947 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.60;AVGPOST=0.9964;ERATE=0.0041;EUR_AF=0.57;LDAF=0.5567;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118074117 rs1793173 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.92;AMR_AF=0.78;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7769;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118074337 rs1793174 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.92;AMR_AF=0.78;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7766;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118081345 rs17121881 A T 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118081468 rs17121882 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.15;AMR_AF=0.48;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118083664 rs1715429 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.93;AMR_AF=0.78;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7854;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118107805 rs1793140 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.92;AMR_AF=0.76;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7774;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118108003 rs1793141 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.91;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7651;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118110977 rs2853006 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.91;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7651;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118134785 rs1624780 T G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.66;AMR_AF=0.56;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.61;LDAF=0.5915;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118179197 rs1599810 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.40;AMR_AF=0.68;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6270;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +11 118179200 rs1599809 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3757;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +11 118182829 rs1945765 T A 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3766;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118209960 rs2276424 A C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.37;AMR_AF=0.61;AN=2;ASN_AF=0.79;AVGPOST=0.9996;ERATE=0.0031;EUR_AF=0.73;LDAF=0.6468;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118221350 rs3753058 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.45;AVGPOST=0.9973;ERATE=0.0015;EUR_AF=0.14;LDAF=0.2070;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 118362414 rs562780 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.91;AMR_AF=0.92;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7893;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118404804 rs6589664 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=0.9948;ERATE=0.0064;EUR_AF=0.31;LDAF=0.2796;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 118405343 rs512849 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9738;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118499394 rs2236661 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.25;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1906;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.31,-0.29 +11 118509668 rs483598 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.47;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5823;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118514625 rs11216938 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1902;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 118526306 rs150576411 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0064;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 118625609 rs580079 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8793;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 118651809 rs555649 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.36;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4117;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 118769442 rs7104819 A G 100 PASS AA=g;AC=1;AF=0.46;AFR_AF=0.66;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9951;ERATE=0.0005;EUR_AF=0.42;LDAF=0.4569;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 118919132 rs2276060 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.23;AMR_AF=0.34;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4777;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 118919206 rs568922 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.62;AMR_AF=0.68;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7874;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 118920453 rs673768 T C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.97;AMR_AF=0.73;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8779;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 118922200 rs1804690 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.07;AN=2;ASN_AF=0.34;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.12;LDAF=0.1623;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 118925341 rs538478 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.22;AMR_AF=0.32;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4658;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 118959331 rs17075 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.77;AMR_AF=0.67;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0014;EUR_AF=0.53;LDAF=0.5444;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 118962816 rs1784304 C A 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.19;AMR_AF=0.33;AN=2;ASN_AF=0.45;AVGPOST=0.9949;ERATE=0.0661;EUR_AF=0.27;LDAF=0.3090;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0112;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 118978411 rs7940073 G C 100 PASS AA=C;AC=1;AF=0.86;AFR_AF=0.85;AMR_AF=0.95;AN=2;ASN_AF=0.74;AVGPOST=0.9904;ERATE=0.0010;EUR_AF=0.92;LDAF=0.8649;RSQ=0.9697;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +11 118984287 rs4938630 A C 100 PASS AA=C;AC=1;AF=0.89;AFR_AF=0.96;AMR_AF=0.95;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8893;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 119003322 rs662069 C A 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.18;AMR_AF=0.33;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4388;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119005088 rs512703 C T 100 PASS AA=T;AC=1;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9820;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119005132 rs100803 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.18;AMR_AF=0.33;AN=2;ASN_AF=0.74;AVGPOST=0.9985;ERATE=0.0018;EUR_AF=0.44;LDAF=0.4425;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119043656 rs643423 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.65;AMR_AF=0.45;AN=2;ASN_AF=0.87;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6342;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119052826 rs4245191 C A 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.71;AMR_AF=0.46;AN=2;ASN_AF=0.87;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.54;LDAF=0.6488;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119054488 rs10790286 C T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.40;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5280;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119059404 rs1815811 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.60;AMR_AF=0.47;AN=2;ASN_AF=0.86;AVGPOST=0.9958;ERATE=0.0019;EUR_AF=0.56;LDAF=0.6333;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119060963 rs45535039 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3258;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119146659 rs2511854 G C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.85;AMR_AF=0.49;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.57;LDAF=0.6980;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119148573 rs2510152 G T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.72;AMR_AF=0.48;AN=2;ASN_AF=0.81;AVGPOST=0.9938;ERATE=0.0430;EUR_AF=0.53;LDAF=0.6344;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119181170 rs2249466 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.77;AMR_AF=0.75;AN=2;ASN_AF=0.65;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7127;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 119185347 rs6589732 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.29;AMR_AF=0.44;AN=2;ASN_AF=0.16;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3221;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 119206375 rs2511841 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.71;AMR_AF=0.71;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6782;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 119213303 rs11217241 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0011;EUR_AF=0.07;LDAF=0.1671;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119216231 rs2510143 A G 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.84;AMR_AF=0.89;AN=2;ASN_AF=0.86;AVGPOST=0.9983;ERATE=0.0060;EUR_AF=0.95;LDAF=0.8918;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0229;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 119216504 rs3814762 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.05;AMR_AF=0.22;AN=2;ASN_AF=0.19;AVGPOST=0.9950;ERATE=0.0008;EUR_AF=0.33;LDAF=0.2131;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 119217254 rs883247 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.56;AMR_AF=0.58;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6251;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 119229964 rs2241646 G A 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.58;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.72;LDAF=0.7167;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 119244095 rs587985 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.59;AMR_AF=0.59;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.62;LDAF=0.6686;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 119510644 rs7940667 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.66;AMR_AF=0.94;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8725;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120097498 rs873059 T C 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.3995;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120099658 rs2508489 A G 100 PASS AA=a;AC=2;AF=0.59;AFR_AF=0.53;AMR_AF=0.77;AN=2;ASN_AF=0.14;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.89;LDAF=0.5933;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120099679 rs2508490 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.51;AMR_AF=0.64;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.80;LDAF=0.5341;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120175749 rs7110845 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.95;AMR_AF=0.65;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7614;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 120176310 rs12790634 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.26;AN=2;ASN_AF=0.03;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2010;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 120292570 rs532006 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9890;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120338040 rs2305011 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.07;AVGPOST=0.9981;ERATE=0.0007;EUR_AF=0.14;LDAF=0.1096;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 120355230 rs503473 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.67;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4279;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 120776001 rs2156634 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9976;ERATE=0.0009;EUR_AF=0.87;LDAF=0.8922;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120823528 rs10750178 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9118;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120823608 rs2298725 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.09;AMR_AF=0.34;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2743;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120823721 rs2298724 A G 100 PASS AA=A;AC=2;AF=0.28;AFR_AF=0.09;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0015;EUR_AF=0.36;LDAF=0.2819;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120827609 rs644057 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7221;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 120929197 rs3758891 G A 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2166;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 120996292 rs536069 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.97;AMR_AF=0.68;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7713;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 120998942 rs10502247 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.17;AMR_AF=0.28;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2949;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 121000784 rs586473 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.90;AMR_AF=0.68;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7548;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 121032978 rs526433 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9967;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 121033105 rs662496 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.87;AMR_AF=0.38;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4598;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 121038810 rs2155369 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1534;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 121403229 rs636588 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9890;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 121437819 rs1699107 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 121445084 rs1792126 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 121456962 rs1699102 C T 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.46;AMR_AF=0.52;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0055;EUR_AF=0.66;LDAF=0.4546;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 121475798 rs1784929 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 121483401 rs1010159 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.43;AMR_AF=0.50;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5121;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.04,-0.00 +11 121491782 rs1792120 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9853;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 121493001 rs1614735 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.08;AMR_AF=0.43;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.50;LDAF=0.2959;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 122650172 rs4935813 C G 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.66;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=0.9980;ERATE=0.0022;EUR_AF=0.78;LDAF=0.7341;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 122738261 rs2272094 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.41;AMR_AF=0.73;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5875;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 122742154 rs56148911 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0919;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 123065683 rs2302605 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.12;AMR_AF=0.62;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4959;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +11 123504959 rs1148110 C G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.96;AMR_AF=0.65;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.54;LDAF=0.7089;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 123513161 rs1275085 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0689;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123596703 rs3183878 A C 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9993;ERATE=0.0078;EUR_AF=0.38;LDAF=0.3520;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 123600475 rs1144507 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.75;AMR_AF=0.73;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.6636;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 123624658 rs12364099 G T 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.0869;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 123676413 rs7952150 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2311;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 123753937 rs1939927 A G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9004;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123754844 rs10893099 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 123777497 rs10750250 G A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.89;AMR_AF=0.83;AN=2;ASN_AF=0.73;AVGPOST=0.9926;ERATE=0.0104;EUR_AF=0.73;LDAF=0.7836;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123777536 rs7926767 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.62;AMR_AF=0.79;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7020;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123777986 rs7942047 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.90;AMR_AF=0.87;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8345;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123778031 rs7927385 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.62;AMR_AF=0.79;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7020;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123847473 rs55944888 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1252;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123848121 rs17686210 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.16;AMR_AF=0.24;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2052;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123848212 rs17759513 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1979;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123886307 rs79057843 C T 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.33;AN=2;ASN_AF=0.22;AVGPOST=0.9886;ERATE=0.0194;EUR_AF=0.35;LDAF=0.2790;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123886308 rs11219407 A G 100 PASS AA=g;AC=1;AF=0.65;AFR_AF=0.47;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=0.9871;ERATE=0.0158;EUR_AF=0.65;LDAF=0.6460;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123886681 rs1893766 A G 100 PASS AA=a;AC=1;AF=0.42;AFR_AF=0.39;AMR_AF=0.52;AN=2;ASN_AF=0.38;AVGPOST=0.9836;ERATE=0.0117;EUR_AF=0.43;LDAF=0.4238;RSQ=0.9736;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.57,-0.14,-3.92 +11 123886865 rs4084209 T A 100 PASS AA=t;AC=1;AF=0.69;AFR_AF=0.50;AMR_AF=0.79;AN=2;ASN_AF=0.76;AVGPOST=0.9976;ERATE=0.0027;EUR_AF=0.73;LDAF=0.6938;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123886984 rs4936880 A G 100 PASS AA=a;AC=1;AF=0.45;AFR_AF=0.45;AMR_AF=0.54;AN=2;ASN_AF=0.41;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4475;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-1.99 +11 123887164 rs4936881 A C 100 PASS AA=a;AC=1;AF=0.45;AFR_AF=0.45;AMR_AF=0.53;AN=2;ASN_AF=0.40;AVGPOST=0.9959;ERATE=0.0010;EUR_AF=0.44;LDAF=0.4465;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123887184 rs4936882 T G 100 PASS AA=t;AC=1;AF=0.69;AFR_AF=0.51;AMR_AF=0.79;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6947;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123893987 rs142337884 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=0.9935;ERATE=0.0006;EUR_AF=0.38;LDAF=0.2537;RSQ=0.9875;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.32,-0.29,-3.38 +11 123894119 rs12366219 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.21;AVGPOST=0.9736;ERATE=0.0047;EUR_AF=0.36;LDAF=0.2640;RSQ=0.9527;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.800:-0.21,-0.42,-1.96 +11 123894136 rs28499345 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.84;AMR_AF=0.82;AN=2;ASN_AF=0.78;AVGPOST=0.9513;ERATE=0.0135;EUR_AF=0.78;LDAF=0.7935;RSQ=0.9008;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.38,-0.03,-1.28 +11 123909627 rs11219420 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.15;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9907;ERATE=0.0018;EUR_AF=0.37;LDAF=0.3276;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123909637 rs4936889 G T 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=0.9925;ERATE=0.0065;EUR_AF=0.37;LDAF=0.3165;RSQ=0.9888;SNPSOURCE=EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 123909695 rs3894197 G C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.41;AMR_AF=0.77;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6637;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124012491 rs2276052 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0402;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124015994 rs1056615 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.79;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6371;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124179902 rs57552127 G A 100 PASS AA=g;AC=1;AF=0.10;AFR_AF=0.35;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0996;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124189306 rs2466620 G A 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2384;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124189729 rs2512219 C T 100 PASS AA=t;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2381;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124190137 rs2466621 A G 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2386;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124252422 rs503220 G A 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.46;AMR_AF=0.31;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3289;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.91,-0.00,-5.00 +11 124252750 rs886202 G A 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9720;ERATE=0.0055;EUR_AF=0.30;LDAF=0.3160;RSQ=0.9456;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +11 124252892 rs644147 A G 100 PASS AA=g;AC=1;AF=0.27;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9742;ERATE=0.0234;EUR_AF=0.27;LDAF=0.2750;RSQ=0.9529;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-5.00 +11 124253048 rs146094090 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0371;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-2.02,-0.00,-3.74 +11 124253181 rs28373946 T C 100 PASS AA=c;AC=2;AF=0.60;AFR_AF=0.78;AMR_AF=0.54;AN=2;ASN_AF=0.55;AVGPOST=0.9562;ERATE=0.0703;EUR_AF=0.56;LDAF=0.6047;RSQ=0.9023;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +11 124266906 rs530992 C T 100 PASS AA=N;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.31;AN=2;ASN_AF=0.25;AVGPOST=0.9961;ERATE=0.0007;EUR_AF=0.31;LDAF=0.3233;RSQ=0.9928;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124266912 rs28398895 A G 100 PASS AA=N;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.89;AN=2;ASN_AF=0.89;AVGPOST=0.9865;ERATE=0.0085;EUR_AF=0.86;LDAF=0.8883;RSQ=0.9516;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 124267056 rs144478570 G A 100 PASS AA=N;AC=1;AF=0.03;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0328;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +11 124267148 rs77374761 C T 100 PASS AA=N;AC=1;AF=0.31;AFR_AF=0.54;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9503;ERATE=0.0220;EUR_AF=0.22;LDAF=0.2998;RSQ=0.9266;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.300:-2.29,-0.03,-1.15 +11 124267177 rs61910862 T C 100 PASS AA=N;AC=2;AF=0.81;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.84;AVGPOST=0.9363;ERATE=0.0077;EUR_AF=0.77;LDAF=0.7969;RSQ=0.8789;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.800:-2.87,-0.46,-0.19 +11 124294703 rs10750270 T C 100 PASS AA=t;AC=1;AF=0.38;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3812;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124310622 rs4296049 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.04;AMR_AF=0.35;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2939;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124440617 rs12792184 C T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.80;AMR_AF=0.76;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7938;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124618346 rs111738856 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.09;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0220;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124739988 rs4936957 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.53;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9938;ERATE=0.0036;EUR_AF=0.68;LDAF=0.5466;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124742365 rs3862618 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.29;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1349;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124747837 rs7933204 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.83;AMR_AF=0.50;AN=2;ASN_AF=0.47;AVGPOST=0.9942;ERATE=0.0013;EUR_AF=0.67;LDAF=0.6238;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124764050 rs67478674 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.08;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1266;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124766128 rs4078313 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.77;AMR_AF=0.26;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4584;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124766591 rs4078483 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.85;AMR_AF=0.52;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6459;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124767067 rs59648931 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.61;AMR_AF=0.19;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3597;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124767125 rs73016370 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.24;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1086;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124789755 rs3802904 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.86;AMR_AF=0.63;AN=2;ASN_AF=0.92;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7898;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124793682 rs10790715 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.87;AMR_AF=0.63;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7848;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124824839 rs12272437 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.31;AMR_AF=0.15;AN=2;ASN_AF=0.18;AVGPOST=0.9905;ERATE=0.0121;EUR_AF=0.13;LDAF=0.1890;RSQ=0.9759;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124829914 rs7482800 T A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.37;AMR_AF=0.16;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2134;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +11 124857708 rs4936966 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2656;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124861377 rs61752520 A G 100 PASS AA=a;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0173;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124862514 rs6590113 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2644;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124863136 rs7951202 C A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2655;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124875124 rs35971753 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.36;AMR_AF=0.16;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2106;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124908352 rs7107487 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.37;AMR_AF=0.16;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2116;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124933351 rs12791554 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.35;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=0.17;LDAF=0.2172;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +11 124947149 rs12276567 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.49;AMR_AF=0.30;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2825;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 124947396 rs55752830 A G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.50;AMR_AF=0.39;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3400;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 124951311 rs75801851 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.25;AN=2;ASN_AF=0.30;AVGPOST=0.9967;ERATE=0.0075;EUR_AF=0.22;LDAF=0.2428;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 124955032 rs948268 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.93;AMR_AF=0.54;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6357;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 124967487 rs1043821 T A 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.72;AMR_AF=0.39;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5718;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 124967678 rs3737350 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.71;AMR_AF=0.39;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5694;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 125298871 rs595849 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9561;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125326026 rs2241514 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.23;AMR_AF=0.28;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3167;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 125351472 rs597570 A T 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1563;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 125478209 rs6590153 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.57;AMR_AF=0.31;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4093;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 125479363 rs2241502 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.57;AMR_AF=0.31;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4097;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 125479496 rs2241501 C T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.28;AMR_AF=0.25;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3040;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 125497466 rs491528 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.42;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3428;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 125525195 rs506504 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9822;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +11 125617610 rs2114084 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 125648503 rs494361 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.81;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8981;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125763746 rs3088241 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.40;AMR_AF=0.43;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4840;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 125766044 rs549990 C A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.61;AMR_AF=0.62;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6568;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 125766173 rs622756 A C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.65;AMR_AF=0.90;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.86;LDAF=0.8225;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125766204 rs600761 G C 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.61;AMR_AF=0.89;AN=2;ASN_AF=0.88;AVGPOST=0.9980;ERATE=0.0019;EUR_AF=0.85;LDAF=0.8103;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125766207 rs471980 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.61;AMR_AF=0.89;AN=2;ASN_AF=0.88;AVGPOST=0.9984;ERATE=0.0014;EUR_AF=0.85;LDAF=0.8111;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125851055 rs564214 A G 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.46;AMR_AF=0.18;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2514;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125851181 rs684805 G A 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.46;AMR_AF=0.18;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2514;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125867053 rs11220309 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.94;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9510;RSQ=0.9987;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125871715 rs12274923 G A 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1257;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125871735 rs516664 C T 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3108;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 125891269 rs3740912 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.81;AMR_AF=0.56;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 126074192 rs2276312 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2646;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 126080757 rs608367 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.57;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7911;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 126081336 rs587891 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 126081403 rs2282580 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.27;AMR_AF=0.51;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4777;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 126139100 rs1786702 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.57;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7911;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 126146244 rs56321210 C T 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9952;ERATE=0.0051;EUR_AF=1.00;LDAF=0.9952;RSQ=0.6297;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 126174164 rs695029 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3098;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 126176578 rs637462 G A 100 PASS AA=g;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.80;LDAF=0.9074;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 128333503 rs7111236 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.47;AMR_AF=0.39;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5036;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 128651893 rs35195224 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.47;AMR_AF=0.14;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.08;LDAF=0.2056;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 128675292 rs7113191 T A 100 PASS AA=t;AC=1;AF=0.15;AFR_AF=0.24;AMR_AF=0.10;AN=2;ASN_AF=0.14;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1514;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 128709940 rs41302407 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 128772452 rs11221503 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=0.9991;ERATE=0.0022;EUR_AF=0.24;LDAF=0.1459;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 128773413 rs4937387 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2312;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 128781339 rs6590357 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.87;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8546;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 128781978 rs7118824 T G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.87;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8517;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 128782002 rs7118833 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.83;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=0.9886;ERATE=0.0150;EUR_AF=0.83;LDAF=0.8347;RSQ=0.9671;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 128782012 rs7102584 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9899;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 128786294 rs4937391 G A 100 PASS AA=g;AC=2;AF=0.72;AFR_AF=0.75;AMR_AF=0.71;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7176;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 128842873 rs581258 T C 100 PASS AA=T;AC=2;AF=0.19;AFR_AF=0.25;AMR_AF=0.19;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1861;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 129321026 rs10791010 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.19;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.19;LDAF=0.2445;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 129321066 rs10791011 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.19;AMR_AF=0.19;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2500;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 129801043 rs2277033 C T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.83;AMR_AF=0.51;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6303;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 129827700 rs78900720 T A 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0154;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 129830796 rs11221912 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.40;AMR_AF=0.15;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2715;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 129939826 rs80070284 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.27;AMR_AF=0.11;AN=2;ASN_AF=0.20;AVGPOST=0.9892;ERATE=0.0011;EUR_AF=0.10;LDAF=0.1679;RSQ=0.9716;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +11 129990587 rs747180 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.63;AMR_AF=0.14;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2783;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 129998900 rs651935 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9944;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +11 130060612 rs858704 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.76;AMR_AF=0.82;AN=2;ASN_AF=0.97;AVGPOST=0.9937;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8388;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0123;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.33 +11 130064223 rs610005 A G 100 PASS AA=a;AC=2;AF=0.91;AFR_AF=0.84;AMR_AF=0.93;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9086;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +11 130064647 rs597661 G A 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.65;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8290;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 130066261 rs17667603 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0388;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 130066335 rs476106 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.35;AMR_AF=0.74;AN=2;ASN_AF=0.70;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6209;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 130066372 rs858713 G A 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.79;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.86;LDAF=0.8725;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-1.27,-0.02,-5.00 +11 130068179 rs202205907 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 130281488 rs2131535 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.71;AMR_AF=0.80;AN=2;ASN_AF=0.82;AVGPOST=0.9963;ERATE=0.0017;EUR_AF=0.77;LDAF=0.7735;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 130297948 rs7927048 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.15;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=0.9528;ERATE=0.0012;EUR_AF=0.56;LDAF=0.4972;RSQ=0.9347;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +11 130297957 rs7942034 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.95;AMR_AF=0.92;AN=2;ASN_AF=0.95;AVGPOST=0.9528;ERATE=0.0032;EUR_AF=0.81;LDAF=0.8872;RSQ=0.8270;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-3.08,-0.47,-0.18 +11 130339312 rs731446 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.82;AMR_AF=0.49;AN=2;ASN_AF=0.37;AVGPOST=0.9947;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5829;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 130343702 rs61744317 C T 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.0013;LDAF=0.0126;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 130750642 rs2298566 A C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.93;AMR_AF=0.76;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 130776646 rs4586174 T A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.90;AMR_AF=0.76;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7628;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 130780225 rs681982 C A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=0.9648;ERATE=0.0283;EUR_AF=0.96;LDAF=0.9450;RSQ=0.7482;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 130784754 rs3751037 C G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.65;AMR_AF=0.72;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6952;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 130784971 rs3751036 C G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.90;AMR_AF=0.76;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7582;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 132306153 rs1940024 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.87;AMR_AF=0.47;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5201;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 133712348 rs2257010 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3596;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 133712473 rs2257004 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3646;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 133714522 rs2282602 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3643;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134054773 rs71486993 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0150;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134073019 rs2305379 A T 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3231;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134109924 rs35378544 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.07;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0352;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134119820 rs12799304 C T 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.33;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0973;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134132559 rs561945 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2577;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 134151364 rs78033300 C A 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.06;AVGPOST=0.9942;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1136;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134151370 rs541174 T C 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.06;AVGPOST=0.9845;ERATE=0.0234;EUR_AF=0.20;LDAF=0.1323;RSQ=0.9515;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134151975 rs472287 G C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.86;AMR_AF=0.80;AN=2;ASN_AF=0.72;AVGPOST=0.9539;ERATE=0.0445;EUR_AF=0.90;LDAF=0.8213;RSQ=0.8970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0113;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.96,-0.00 +11 134152030 rs10791352 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.63;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0040;EUR_AF=0.79;LDAF=0.7314;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 134181101 rs1144218 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.05;AMR_AF=0.48;AN=2;ASN_AF=0.37;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3518;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 134182375 rs2509062 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9971;RSQ=0.8596;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 134188542 rs481252 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.47;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4210;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134214380 rs111433290 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.37;AMR_AF=0.22;AN=2;ASN_AF=0.09;AVGPOST=0.9948;ERATE=0.0203;EUR_AF=0.17;LDAF=0.2021;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 134237113 rs10791357 C A 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=0.9981;ERATE=0.0018;EUR_AF=0.19;LDAF=0.2278;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +11 134238518 rs78260611 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0935;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +11 134240142 rs10791358 T C 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.06;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.32;LDAF=0.3146;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +11 134244631 rs876542 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0821;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 394714 rs4880610 G A 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9817;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 395266 rs4880611 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0014;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 429932 rs7092412 C T 100 PASS AA=N;AC=1;AF=0.43;AFR_AF=0.43;AMR_AF=0.46;AN=2;ASN_AF=0.49;AVGPOST=0.9985;ERATE=0.0019;EUR_AF=0.37;LDAF=0.4283;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 429977 rs10904083 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.24;AMR_AF=0.42;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3666;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 436848 rs10904093 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.36;AN=2;ASN_AF=0.29;AVGPOST=0.9982;ERATE=0.0041;EUR_AF=0.48;LDAF=0.3306;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 445061 rs6560837 C T 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9808;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 459940 rs4881274 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.57;AMR_AF=0.63;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.55;LDAF=0.6109;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 468748 rs4881290 C T 100 PASS AA=.;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 518437 rs148545889 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 1046712 rs2306409 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.41;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5304;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 1142208 rs10794716 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 1230968 rs2271275 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.24;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9955;ERATE=0.0023;EUR_AF=0.68;LDAF=0.5562;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +10 1245893 rs1983028 A C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.22;AMR_AF=0.72;AN=2;ASN_AF=0.98;AVGPOST=0.9482;ERATE=0.0134;EUR_AF=0.67;LDAF=0.6523;RSQ=0.9410;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +10 1263076 rs3750677 C T 100 PASS AA=c;AC=1;AF=0.34;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3446;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.25,-0.37 +10 1279598 rs67687625 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3021;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 3143643 rs4881080 A C 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.76,-0.00 +10 3146180 rs2306294 C T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.71;AMR_AF=0.47;AN=2;ASN_AF=0.42;AVGPOST=0.9863;ERATE=0.0135;EUR_AF=0.46;LDAF=0.5062;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +10 3150898 rs11251721 C T 100 PASS AA=c;AC=1;AF=0.16;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1649;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 3150973 rs1132173 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.28;AMR_AF=0.34;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3675;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 3155263 rs7906901 T C 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.98;AVGPOST=0.9897;ERATE=0.0040;EUR_AF=0.89;LDAF=0.8566;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.73,-0.00 +10 3155285 rs3816698 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1463;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 3155353 rs3816699 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1463;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 3155408 rs3816700 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.34;AMR_AF=0.51;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6024;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 3155428 rs3816701 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5892;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +10 3155540 rs4881085 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.71;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8742;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +10 3155620 rs1052309 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.41;AMR_AF=0.52;AN=2;ASN_AF=0.83;AVGPOST=0.9970;ERATE=0.0040;EUR_AF=0.65;LDAF=0.6242;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 3155698 rs4881086 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.33;AMR_AF=0.34;AN=2;ASN_AF=0.15;AVGPOST=0.9985;ERATE=0.0030;EUR_AF=0.25;LDAF=0.2581;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 3155753 rs4881087 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.98;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.95;LDAF=0.9042;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 3171995 rs2279211 G T 100 PASS AA=t;AC=2;AF=0.40;AFR_AF=0.45;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.40;LDAF=0.4048;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 3172121 rs1052333 C T 100 PASS AA=N;AC=2;AF=0.41;AFR_AF=0.45;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4055;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 3175541 rs3740613 C A 100 PASS AA=a;AC=2;AF=0.43;AFR_AF=0.48;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4324;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 3178815 rs9063 G C 100 PASS AA=g;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1854;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 4872825 rs150291564 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.0026;LDAF=0.0018;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5005747 rs2904798 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.23;AN=2;ASN_AF=0.51;AVGPOST=0.9951;ERATE=0.0006;EUR_AF=0.06;LDAF=0.2029;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5010572 rs1138600 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.81;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9541;ERATE=0.0570;EUR_AF=0.84;LDAF=0.8487;RSQ=0.8338;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.850:-4.70,-0.62,-0.12 +10 5018146 rs199593717 T A 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.63;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.8541;ERATE=0.0321;EUR_AF=0.58;LDAF=0.6114;RSQ=0.7335;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.750:-4.70,-0.59,-0.13 +10 5018174 rs200458191 C T 100 PASS AA=N;AC=2;AF=0.65;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.76;AVGPOST=0.8649;ERATE=0.0265;EUR_AF=0.58;LDAF=0.6210;RSQ=0.7545;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.900:-4.70,-0.59,-0.13 +10 5019959 rs8483 G A 100 PASS AA=N;AC=1;AF=0.51;AFR_AF=0.59;AMR_AF=0.55;AN=2;ASN_AF=0.55;AVGPOST=0.9846;ERATE=0.0069;EUR_AF=0.41;LDAF=0.5100;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-2.32,-0.01,-1.73 +10 5034016 rs200698968 T C 100 PASS AA=t;AC=1;AF=0.40;AFR_AF=0.30;AMR_AF=0.43;AN=2;ASN_AF=0.62;AVGPOST=0.8668;ERATE=0.0380;EUR_AF=0.30;LDAF=0.4287;RSQ=0.7613;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.850:-0.48,-0.48,-0.48 +10 5136651 rs12529 C G 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.50;AMR_AF=0.55;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5718;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5139685 rs12387 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.92;AMR_AF=0.85;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8684;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5144635 rs4347280 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.36;AMR_AF=0.24;AN=2;ASN_AF=0.21;AVGPOST=0.9937;ERATE=0.0045;EUR_AF=0.27;LDAF=0.2678;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +10 5144638 rs33979906 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.20;AMR_AF=0.38;AN=2;ASN_AF=0.66;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3581;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +10 5147909 rs2275928 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.66;AMR_AF=0.47;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4939;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5149703 rs3209896 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.66;AMR_AF=0.47;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4945;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5242346 rs7099651 G A 100 PASS AA=a;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9845;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.67,-0.00 +10 5255025 rs4880718 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8148;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5415954 rs10904481 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4014;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-2.93,-0.00,-5.00 +10 5416202 rs10904482 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=0.9794;ERATE=0.0020;EUR_AF=0.15;LDAF=0.1591;RSQ=0.9443;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.04,-0.00,-4.10 +10 5435918 rs7097775 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6806;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5436260 rs7910290 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.79;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7707;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5437365 rs11253156 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.81;AMR_AF=0.79;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7787;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5446794 rs7477466 C T 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.70;AMR_AF=0.78;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7496;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5471200 rs4604777 C T 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=0.88;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9550;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5495218 rs4567355 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5498248 rs4242790 G T 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.57;AMR_AF=0.72;AN=2;ASN_AF=0.64;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.64;LDAF=0.6372;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5541230 rs11546426 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.29;LDAF=0.2888;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 5682641 rs7896492 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9863;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5765637 rs3793708 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.41;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1356;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 5781628 rs2254067 T G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8469;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5781969 rs2797486 A T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8469;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5782022 rs4748636 C A 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0604;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5784151 rs45575338 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.25;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1727;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5784509 rs2797488 G A 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.81;AMR_AF=0.61;AN=2;ASN_AF=0.63;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6745;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 5788608 rs2797491 G C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8446;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5790420 rs2669142 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9776;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5790616 rs2797492 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.30;AMR_AF=0.07;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1939;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 5798730 rs3793707 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.25;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1718;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5800811 rs2246268 A C 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.29;AMR_AF=0.07;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1907;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 5804531 rs2797501 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.88;AMR_AF=0.89;AN=2;ASN_AF=0.81;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.87;LDAF=0.8584;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5808086 rs1129614 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1687;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5920121 rs1052420 T C 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.71;AMR_AF=0.92;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8355;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5924942 rs617165 C G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.94;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8821;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5925971 rs631947 C A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.95;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9299;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5926079 rs3750657 A C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.51;AMR_AF=0.39;AN=2;ASN_AF=0.14;AVGPOST=0.9879;ERATE=0.0007;EUR_AF=0.43;LDAF=0.3652;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5926080 rs78422537 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.52;AMR_AF=0.39;AN=2;ASN_AF=0.14;AVGPOST=0.9874;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3656;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5951025 rs595923 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.14;AMR_AF=0.49;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4302;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 5957352 rs41290313 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0681;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 5963174 rs41290317 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0704;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-1.98,-0.00,-5.00 +10 5978411 rs646406 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.86;AMR_AF=0.93;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8688;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 5995052 rs2229135 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0960;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 6001696 rs3136618 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.65;AMR_AF=0.49;AN=2;ASN_AF=0.42;AVGPOST=0.9993;ERATE=0.0022;EUR_AF=0.47;LDAF=0.4997;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 6002368 rs2228059 T G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.71;AMR_AF=0.50;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5178;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 6005674 rs3136614 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.84;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8556;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +10 6008154 rs3181147 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0170;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 6061479 rs28360490 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0512;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 6061499 rs28360489 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0512;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 6063674 rs942200 T C 100 PASS AA=t;AC=2;AF=0.91;AFR_AF=0.65;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9063;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 6066195 rs12358961 T A 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3502;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 6150677 rs12264240 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 6156118 rs10795823 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +10 6245317 rs6602514 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.34;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=0.9956;ERATE=0.0006;EUR_AF=0.32;LDAF=0.2605;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 6258052 rs2148294 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.57;AMR_AF=0.93;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.95;LDAF=0.8208;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 6261704 rs1557111 T C 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.71;AMR_AF=0.66;AN=2;ASN_AF=0.72;AVGPOST=0.9974;ERATE=0.0080;EUR_AF=0.73;LDAF=0.7133;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 6268205 rs35877496 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0155;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0156;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 6521147 rs643610 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.15;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0016;EUR_AF=0.21;LDAF=0.2098;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 7285632 rs2248474 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9240;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 7745492 rs2298319 A C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.42;AMR_AF=0.30;AN=2;ASN_AF=0.25;AVGPOST=0.9993;ERATE=0.0032;EUR_AF=0.15;LDAF=0.2589;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 7759595 rs7072478 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1974;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 7763661 rs7075296 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 7769101 rs2274455 T G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.54;AMR_AF=0.28;AN=2;ASN_AF=0.23;AVGPOST=0.9966;ERATE=0.0049;EUR_AF=0.21;LDAF=0.3003;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 7773976 rs7098319 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.62;AMR_AF=0.86;AN=2;ASN_AF=0.72;AVGPOST=0.9984;ERATE=0.0071;EUR_AF=0.80;LDAF=0.7506;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 7786286 rs141636649 C T 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0311;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 7844195 rs932971 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4191;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 7866268 rs7070208 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9957;ERATE=0.0041;EUR_AF=1.00;LDAF=0.9721;RSQ=0.9481;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 8006798 rs4747647 A G 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.23;AMR_AF=0.71;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5749;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 8007559 rs10795583 G C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.24;AMR_AF=0.65;AN=2;ASN_AF=0.66;AVGPOST=0.9729;ERATE=0.0193;EUR_AF=0.53;LDAF=0.5178;RSQ=0.9658;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 8007560 rs1244229 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.45;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=0.9706;ERATE=0.0235;EUR_AF=0.65;LDAF=0.6152;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 8111409 rs422628 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8259;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11299735 rs2277212 A T 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.68;AMR_AF=0.71;AN=2;ASN_AF=0.85;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7527;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 11330548 rs2277215 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.36;AMR_AF=0.44;AN=2;ASN_AF=0.62;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.27;LDAF=0.4099;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11527786 rs3824642 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.48;AVGPOST=0.9931;ERATE=0.0055;EUR_AF=0.07;LDAF=0.2053;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 11543086 rs3781056 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.18;AVGPOST=0.9957;ERATE=0.0017;EUR_AF=0.15;LDAF=0.1333;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 11789382 rs4750090 G A 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9292;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11789405 rs4750091 G A 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.74;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11789511 rs4750092 C G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9292;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11797436 rs7899215 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9469;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11797467 rs7910140 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9307;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11797619 rs902892 C G 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9392;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +10 11805204 rs72781916 A C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1503;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +10 11805249 rs61739577 T C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1503;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 11805339 rs17850531 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1878;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 11805354 rs12258196 A G 100 PASS AA=a;AC=2;AF=0.51;AFR_AF=0.41;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5059;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11805357 rs10906011 G A 100 PASS AA=g;AC=2;AF=0.51;AFR_AF=0.41;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5059;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 11978499 rs7921794 T G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.83;AMR_AF=0.68;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0018;EUR_AF=0.47;LDAF=0.6865;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 12111090 rs1279138 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9811;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +10 12123666 rs10906066 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.22;AMR_AF=0.49;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4608;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12123667 rs1722445 A C 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.38;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=0.9961;ERATE=0.0022;EUR_AF=0.19;LDAF=0.2766;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 12126490 rs11257527 A T 100 PASS AA=t;AC=1;AF=0.46;AFR_AF=0.23;AMR_AF=0.49;AN=2;ASN_AF=0.48;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.59;LDAF=0.4640;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12131081 rs3740015 T G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.24;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4670;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12140030 rs10906076 C G 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.59;AMR_AF=0.72;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7198;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12143105 rs2062988 C G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.59;AMR_AF=0.73;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7212;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12148259 rs1701472 A C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 12148286 rs1615510 T C 100 PASS AA=t;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9625;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 12149939 rs1722462 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.78;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.90;LDAF=0.8981;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 12159647 rs2399771 A G 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9593;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 12171740 rs11257552 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=0.9892;ERATE=0.0007;EUR_AF=0.48;LDAF=0.3786;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.25,-0.01,-2.08 +10 12191933 rs10466280 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.37;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12200125 rs4750175 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.37;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4401;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12209752 rs6686 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.40;AMR_AF=0.49;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12288302 rs36042706 A G 100 PASS AA=a;AC=2;AF=0.45;AFR_AF=0.32;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.4534;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 12292286 rs12779647 C G 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.57;AVGPOST=0.9990;ERATE=0.0060;EUR_AF=0.55;LDAF=0.5350;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 12292344 rs10951 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.74;AMR_AF=0.66;AN=2;ASN_AF=0.69;AVGPOST=0.9986;ERATE=0.0064;EUR_AF=0.60;LDAF=0.6669;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 12856346 rs11258012 C T 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0006;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 12867598 rs1757051 C G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.77;LDAF=0.7699;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 12940377 rs10752280 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9641;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.68,-0.00 +10 12940455 rs10906249 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9937;RSQ=0.9267;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13158262 rs2244380 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.81;AMR_AF=0.85;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7952;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13166076 rs523747 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9910;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13206233 rs7090944 A T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.73;AMR_AF=0.83;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7951;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0311;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 13212884 rs2147279 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.74;AMR_AF=0.61;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6795;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13214812 rs6602637 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.74;AMR_AF=0.67;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6901;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13222508 rs12248671 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0087;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 13224886 rs3765520 G T 100 PASS AA=g;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2884;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13225119 rs11258235 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2816;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13230950 rs2296222 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1879;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 13237015 rs10796036 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8031;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13246190 rs7072097 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.07;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0016;EUR_AF=0.03;LDAF=0.0335;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 13251345 rs183514711 G A 100 PASS AA=G;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 13275510 rs7893239 C G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.47;AMR_AF=0.42;AN=2;ASN_AF=0.32;AVGPOST=0.9967;ERATE=0.0016;EUR_AF=0.29;LDAF=0.3599;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13275514 rs4750327 A G 100 PASS AA=N;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13275553 rs3829925 T G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.75;AMR_AF=0.92;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8473;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13275643 rs4750328 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.17;AMR_AF=0.27;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1826;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13275676 rs3829926 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.42;AMR_AF=0.74;AN=2;ASN_AF=0.54;AVGPOST=0.9979;ERATE=0.0041;EUR_AF=0.65;LDAF=0.5843;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13276179 rs942418 A G 100 PASS AA=a;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9741;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.27,-0.00 +10 13337588 rs1747682 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9767;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13340293 rs7916926 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.07;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4271;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13370315 rs3740211 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.16;AMR_AF=0.62;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5014;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13375906 rs10752297 T C 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.67;AMR_AF=0.72;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6522;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13481427 rs12415754 T A 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3771;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 13494594 rs2277222 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.14;AMR_AF=0.34;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3959;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 13534851 rs2251555 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.52;AMR_AF=0.56;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4867;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13653653 rs1135102 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.44;AMR_AF=0.49;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.44;LDAF=0.3491;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13693883 rs11258499 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.05;AMR_AF=0.21;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3606;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 13717076 rs3814663 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.43;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0017;EUR_AF=0.43;LDAF=0.2856;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 13782605 rs6602679 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.68;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.61;LDAF=0.7508;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 13824943 rs10160188 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0106;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 14943176 rs61730323 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0462;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 14970168 rs41298886 G C 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0288;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 14974843 rs35927251 G A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.21;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1595;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 14974905 rs12768894 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.15;LDAF=0.1298;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 14976414 rs7076862 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.62;AMR_AF=0.37;AN=2;ASN_AF=0.39;AVGPOST=0.9835;ERATE=0.0300;EUR_AF=0.31;LDAF=0.4088;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 14976727 rs35441642 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1252;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 15008493 rs4750568 A C 100 PASS AA=a;AC=2;AF=0.58;AFR_AF=0.50;AMR_AF=0.72;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5818;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 15106379 rs10796255 A G 100 PASS AA=a;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1773;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 15106441 rs10906818 A G 100 PASS AA=a;AC=1;AF=0.45;AFR_AF=0.43;AMR_AF=0.36;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4443;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 15154974 rs7072269 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.90;LDAF=0.9585;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 15255292 rs3814168 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.04;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0489;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 15573050 rs1041135 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9090;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 15648243 rs2282383 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.58;AMR_AF=0.65;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6995;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 15685983 rs4748191 A T 100 PASS AA=-;AC=2;AF=0.90;AFR_AF=0.65;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9011;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 15701093 rs9333128 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1585;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 15713667 rs7100510 C G 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.43;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0014;EUR_AF=0.66;LDAF=0.6125;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0152;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 15729923 rs1954181 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.54;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7687;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 15761527 rs9333070 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.53;AMR_AF=0.72;AN=2;ASN_AF=0.83;AVGPOST=0.9839;ERATE=0.0013;EUR_AF=0.69;LDAF=0.6934;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +10 15902303 rs2297882 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.46;AMR_AF=0.29;AN=2;ASN_AF=0.16;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2934;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 16526840 rs2275731 G A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.39;LDAF=0.3933;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +10 16547058 rs7904014 A G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.47;LDAF=0.6289;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 16794623 rs10445 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1244;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 16796919 rs1049632 C A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.70;AMR_AF=0.32;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4069;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 16797033 rs7910261 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.87;AMR_AF=0.34;AN=2;ASN_AF=0.42;AVGPOST=0.9988;ERATE=0.0008;EUR_AF=0.26;LDAF=0.4489;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +10 16806545 rs3765595 A C 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1741;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 16878204 rs703062 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.66;AMR_AF=0.74;AN=2;ASN_AF=0.53;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6992;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +10 16882518 rs703064 T C 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.66;AMR_AF=0.73;AN=2;ASN_AF=0.53;AVGPOST=0.9965;ERATE=0.0049;EUR_AF=0.78;LDAF=0.6794;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.07,-0.00 +10 16911605 rs703075 C A 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.88;AMR_AF=0.44;AN=2;ASN_AF=0.39;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.29;LDAF=0.4737;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 16918997 rs1801240 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.20;AMR_AF=0.09;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0920;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 16919052 rs1801239 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0530;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 16943371 rs2796835 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 16948177 rs780807 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.69;AMR_AF=0.66;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7543;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 16967401 rs1276712 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 16967445 rs1276713 T G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.83;AMR_AF=0.81;AN=2;ASN_AF=0.99;AVGPOST=0.9826;ERATE=0.0068;EUR_AF=0.81;LDAF=0.8565;RSQ=0.9542;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 16967586 rs62619939 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.16;AMR_AF=0.15;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1225;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +10 16975078 rs2271461 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1982;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +10 16979593 rs41289303 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0091;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 17024503 rs1801231 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.39;AMR_AF=0.65;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6321;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17024615 rs1801229 A T 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.39;AMR_AF=0.65;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6321;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17032559 rs925522 A C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8917;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17032561 rs925523 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8917;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17088006 rs1801228 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0297;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17110595 rs10795440 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.96;AMR_AF=0.86;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8903;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17130199 rs41289311 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0302;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17146590 rs12571671 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.09;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1142;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 17146652 rs7068549 C A 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.39;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3398;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +10 17152994 rs1801223 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0017;EUR_AF=0.26;LDAF=0.2313;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 17156151 rs1801222 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.78;AMR_AF=0.80;AN=2;ASN_AF=0.82;AVGPOST=0.9946;ERATE=0.0044;EUR_AF=0.70;LDAF=0.7675;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17157572 rs41289313 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0521;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17157630 rs2295813 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.84;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17165545 rs41289315 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0590;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17165552 rs2273737 T G 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0562;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17171265 rs2281648 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.64;AMR_AF=0.82;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8154;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17196670 rs3736820 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1148;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17199419 rs2295810 C G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.86;AMR_AF=0.84;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17199778 rs11254408 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1144;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17199830 rs7894268 A C 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2564;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 17201247 rs17140049 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1161;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17204139 rs33993216 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2477;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 17204187 rs11254413 G A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3880;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17210881 rs7096233 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1161;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17216556 rs2273734 C T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.36;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3862;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 17271400 rs3758410 G C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.67;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9915;ERATE=0.0007;EUR_AF=0.32;LDAF=0.4025;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.64 +10 17659149 rs7895850 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9849;ERATE=0.0011;EUR_AF=0.99;LDAF=0.9900;RSQ=0.4129;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +10 17726779 rs113549693 G A 100 PASS AA=g;AC=1;AF=0.0046;AFR_AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=0.9979;ERATE=0.0032;EUR_AF=0.0040;LDAF=0.0052;RSQ=0.8422;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.800:-2.60,-0.00,-5.00 +10 17756596 rs12221 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0017;EUR_AF=0.20;LDAF=0.1755;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 17875857 rs56278466 T G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.42;AMR_AF=0.19;AN=2;ASN_AF=0.05;AVGPOST=0.9086;ERATE=0.0080;EUR_AF=0.19;LDAF=0.2315;RSQ=0.8576;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:0.950:-0.53,-0.15,-5.00 +10 17891705 rs1926736 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.86;AMR_AF=0.48;AN=2;ASN_AF=0.50;AVGPOST=0.9393;ERATE=0.0028;EUR_AF=0.51;LDAF=0.5737;RSQ=0.9272;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 18122608 rs200561004 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9693;ERATE=0.0021;EUR_AF=0.0040;LDAF=0.0234;RSQ=0.4707;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:0.750:-0.48,-0.48,-0.48 +10 18242304 rs691112 T C 100 PASS AA=C;AC=1;AF=0.93;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9314;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18242311 rs10764176 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.29;AMR_AF=0.23;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2354;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18254655 rs11011754 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1111;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18266783 rs1926740 G T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.52;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0014;EUR_AF=0.47;LDAF=0.4418;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18266989 rs2478568 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.64;AMR_AF=0.69;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6568;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18270208 rs11011850 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0370;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18270422 rs1926739 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.55;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4895;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18276586 rs17658718 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0302;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18439926 rs79819217 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0627;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18691018 rs3750592 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.22;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.51;LDAF=0.3891;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18789724 rs4485000 T G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.05;AVGPOST=0.9989;ERATE=0.0053;EUR_AF=0.34;LDAF=0.2627;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18816633 rs4314963 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2198;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 18828371 rs2228645 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2171;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 18840919 rs12767546 T A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3208;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 18931512 rs7907153 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.47;AMR_AF=0.53;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6352;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 18940157 rs3740102 C A 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4209;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 18957647 rs10741127 T G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.32;AMR_AF=0.41;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.39;LDAF=0.5009;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 20506326 rs12783379 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.3862;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 20506418 rs3817405 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.67;AMR_AF=0.47;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.70;LDAF=0.5572;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 20534333 rs2778979 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7934;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 21074724 rs2296614 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.10;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0603;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 21141469 rs703089 T C 100 PASS AA=C;AC=1;AF=0.96;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9552;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 22048330 rs9045 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.25;AVGPOST=0.9987;ERATE=0.0008;EUR_AF=0.17;LDAF=0.1492;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 22193422 rs792455 T C 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.54;AMR_AF=0.66;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7298;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 22826093 rs1053454 A C 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.83;AMR_AF=0.81;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0026;EUR_AF=0.62;LDAF=0.7003;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 22830719 rs943192 G C 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.82;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9269;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 23220883 rs12360508 T A 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.38;AMR_AF=0.26;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.3007;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 23297301 rs11817610 C T 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.33;AMR_AF=0.62;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5263;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.47 +10 23297336 rs11819616 A T 100 PASS AA=a;AC=1;AF=0.53;AFR_AF=0.33;AMR_AF=0.62;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5261;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.88 +10 23482635 rs7918487 T C 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.60;AMR_AF=0.62;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6224;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 23482850 rs10828415 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2386;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 23633566 rs2036917 C A 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.71;AMR_AF=0.66;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.48;LDAF=0.6536;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 24669877 rs17506606 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1257;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 24721946 rs2274831 A C 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.33;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1947;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 24783384 rs3818673 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.32;AMR_AF=0.22;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2816;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 24783393 rs3818672 C A 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2805;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 24831846 rs59421477 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 24832885 rs3748218 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0035;EUR_AF=0.15;LDAF=0.2620;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0083;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 24873369 rs1127893 C G 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.38;AMR_AF=0.52;AN=2;ASN_AF=0.56;AVGPOST=0.9941;ERATE=0.0027;EUR_AF=0.51;LDAF=0.4942;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.65,-4.40 +10 24889901 rs3748221 T G 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.45;AMR_AF=0.47;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.50;LDAF=0.4410;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 24908686 rs3748222 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.44;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.51;LDAF=0.4401;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +10 25140411 rs1326192 G C 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.38;AMR_AF=0.38;AN=2;ASN_AF=0.51;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4472;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 25701341 rs2480345 C G 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.44;AMR_AF=0.54;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4671;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 26994345 rs1748356 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.38;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5215;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 26998739 rs2368183 G C 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.36;LDAF=0.2827;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 27009334 rs1780196 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.90;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8926;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 27303605 rs2274741 A T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.22;AMR_AF=0.17;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3021;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27317840 rs10829163 C T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.22;AMR_AF=0.17;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3021;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27318333 rs201345550 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.7921;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 27326999 rs7096505 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.86;AMR_AF=0.76;AN=2;ASN_AF=0.98;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8577;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 27349249 rs7080104 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0891;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27350056 rs11015496 G T 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0897;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27350201 rs11015497 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0891;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27356071 rs115864032 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0239;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27368126 rs3737055 A C 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.15;AMR_AF=0.53;AN=2;ASN_AF=0.39;AVGPOST=0.9963;ERATE=0.0029;EUR_AF=0.59;LDAF=0.4294;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 27375559 rs66853312 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1687;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27381349 rs2297145 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3302;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27382236 rs2297146 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.28;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1673;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.70 +10 27382240 rs2297147 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.14;AMR_AF=0.52;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4243;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-3.13,-0.00,-5.00 +10 27382586 rs2297150 G C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1673;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27389197 rs7897309 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.86;LDAF=0.9304;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 27400861 rs9833 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.87;AMR_AF=0.74;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.8629;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 27401056 rs11015538 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3359;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27405096 rs2297152 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.23;LDAF=0.3359;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27405310 rs2480718 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9969;RSQ=0.9482;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 27412669 rs2274743 A T 100 PASS AA=a;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3359;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27423744 rs2275752 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.18;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2779;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27431288 rs41282208 T C 100 PASS AA=t;AC=1;AF=0.04;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0411;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27434483 rs2274634 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3379;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27437994 rs10764675 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3360;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27444329 rs7907981 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.76;AMR_AF=0.67;AN=2;ASN_AF=0.97;AVGPOST=0.9750;ERATE=0.0027;EUR_AF=0.75;LDAF=0.7939;RSQ=0.9492;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.98,-0.05,-5.00 +10 27444344 rs7907988 T G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.83;AMR_AF=0.74;AN=2;ASN_AF=0.98;AVGPOST=0.9986;ERATE=0.0002;EUR_AF=0.82;LDAF=0.8516;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +10 27444578 rs41282218 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.06;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0384;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27449991 rs12572707 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.05;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0978;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27454111 rs7068375 A T 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.5105;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 27456003 rs788238 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9918;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 27459670 rs1981296 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.5105;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 27459746 rs3802526 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.05;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0960;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27475275 rs73598041 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.06;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 27475444 rs10741130 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.52;AMR_AF=0.55;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.5233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 27475494 rs10764686 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.15;AMR_AF=0.52;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4328;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 27508758 rs10764690 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.09;AMR_AF=0.41;AN=2;ASN_AF=0.36;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3453;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 27822816 rs2242356 T A 100 PASS AA=T;AC=1;AF=0.10;AMR_AF=0.03;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0960;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 27964470 rs2253230 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.36;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2742;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 28023747 rs12218027 G C 100 PASS AA=G;AC=1;AF=0.06;AMR_AF=0.03;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0599;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 28032136 rs2252651 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.46;AMR_AF=0.73;AN=2;ASN_AF=0.45;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.80;LDAF=0.6180;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.29 +10 28032360 rs1055192 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.31;AMR_AF=0.07;AN=2;ASN_AF=0.20;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1371;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +10 28101455 rs3737184 C A 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0740;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 28358659 rs7919895 C T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.44;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.15;LDAF=0.4830;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 28378758 rs2997211 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.87;LDAF=0.9223;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 28408538 rs10047289 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.19;AMR_AF=0.32;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.3341;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 28409298 rs145570841 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.0151;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 28409614 rs7903192 C G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.86;AVGPOST=0.9979;ERATE=0.0075;EUR_AF=0.13;LDAF=0.3906;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 28970487 rs56281747 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.26;AN=2;ASN_AF=0.36;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1933;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29578084 rs17851935 A G 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.58;AMR_AF=0.64;AN=2;ASN_AF=0.80;AVGPOST=0.9760;ERATE=0.0112;EUR_AF=0.60;LDAF=0.6504;RSQ=0.9621;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.41,-0.02 +10 29580743 rs2148902 G A 100 PASS AA=g;AC=2;AF=0.68;AFR_AF=0.54;AMR_AF=0.69;AN=2;ASN_AF=0.82;AVGPOST=0.9345;ERATE=0.0207;EUR_AF=0.66;LDAF=0.6698;RSQ=0.8887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0242;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +10 29580942 rs2209788 C T 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.32;AN=2;ASN_AF=0.36;AVGPOST=0.9333;ERATE=0.0011;EUR_AF=0.32;LDAF=0.2902;RSQ=0.9063;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-2.24,-0.01,-1.70 +10 29580944 rs1774948 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=0.9327;ERATE=0.0012;EUR_AF=0.33;LDAF=0.2866;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|0:1.000:-2.14,-0.01,-1.74 +10 29581440 rs3818550 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.16;AMR_AF=0.39;AN=2;ASN_AF=0.54;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3791;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-3.47,-0.00,-5.00 +10 29581493 rs3818551 A C 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2745;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +10 29747417 rs1887465 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.27;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3482;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29754609 rs1057952 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0028;EUR_AF=0.40;LDAF=0.4282;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29759225 rs11007607 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2523;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29759434 rs2274493 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.14;AMR_AF=0.18;AN=2;ASN_AF=0.24;AVGPOST=0.9987;ERATE=0.0008;EUR_AF=0.10;LDAF=0.1571;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29760209 rs2274494 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.35;AMR_AF=0.42;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4256;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29783813 rs6481600 G A 100 PASS AA=g;AC=1;AF=0.53;AFR_AF=0.75;AMR_AF=0.61;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0029;EUR_AF=0.49;LDAF=0.5324;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29783885 rs1056782 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.34;AVGPOST=0.9969;ERATE=0.0122;EUR_AF=0.46;LDAF=0.3875;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29784072 rs2368406 G C 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.68;AMR_AF=0.66;AN=2;ASN_AF=0.53;AVGPOST=0.9666;ERATE=0.0570;EUR_AF=0.70;LDAF=0.6461;RSQ=0.9503;SNPSOURCE=LOWCOV,EXOME;THETA=0.0124;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 29784114 rs6481601 T C 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.70;AVGPOST=0.9644;ERATE=0.0306;EUR_AF=0.81;LDAF=0.7617;RSQ=0.9208;SNPSOURCE=LOWCOV,EXOME;THETA=0.0138;VT=SNP GT:DS:GL 1|1:1.900:-3.42,-0.49,-0.17 +10 29821089 rs17756919 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.32;AMR_AF=0.38;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0026;EUR_AF=0.39;LDAF=0.2937;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 29821523 rs1328323 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3126;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 29822159 rs7076239 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3226;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 29839513 rs10159964 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3020;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.38 +10 29839787 rs10160013 A G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.27;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3075;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 29839864 rs1270874 A C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.64;AMR_AF=0.72;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7385;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 29840038 rs3740003 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.27;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3089;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 29840164 rs3740002 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2693;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 29843833 rs1547169 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.34;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2717;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 30316208 rs2185724 T C 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.38;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.42;LDAF=0.3697;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 30316872 rs3739996 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2637;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 30317826 rs7920682 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.88;AMR_AF=0.44;AN=2;ASN_AF=0.34;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5258;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 30317838 rs7920686 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.85;AMR_AF=0.44;AN=2;ASN_AF=0.34;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5185;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 30629136 rs1047988 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.17;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2141;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 30629226 rs1047991 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2077;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 30728101 rs1042058 T C 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.13;AMR_AF=0.51;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4287;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 30728250 rs2907 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.17;AMR_AF=0.51;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4411;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 30901756 rs9954 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4212;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 30918486 rs75095145 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.43;AMR_AF=0.43;AN=2;ASN_AF=0.49;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4354;RSQ=0.9799;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 30918492 rs76101300 G T 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.43;AMR_AF=0.43;AN=2;ASN_AF=0.49;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4354;RSQ=0.9794;SNPSOURCE=EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 31134214 rs3740236 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.23;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0082;EUR_AF=0.09;LDAF=0.1695;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 31803516 rs220060 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.84;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 32106851 rs2778650 A G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.56;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4927;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +10 32109267 rs138298016 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 32120678 rs2808100 C T 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2395;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 32128611 rs2808096 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.25;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2319;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 32141460 rs2799021 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.25;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2318;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 32307536 rs55938482 T A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9785;RSQ=0.9958;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 32311969 rs176924 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9762;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 32323591 rs211277 G T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.0035;AVGPOST=0.9991;ERATE=0.0017;EUR_AF=0.24;LDAF=0.1560;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 32327779 rs45615333 C G 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0668;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 32328389 rs41289023 A C 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.07;AMR_AF=0.13;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 32575793 rs2986931 A G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.42;AMR_AF=0.60;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6287;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 32742234 rs2505335 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.2816;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 32742256 rs2490505 T G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.66;AMR_AF=0.87;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.88;LDAF=0.7672;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 32751901 rs2505380 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.65;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9932;ERATE=0.0117;EUR_AF=0.99;LDAF=0.9069;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 32832214 rs2990986 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.55;AMR_AF=0.50;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4721;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 32974969 rs1762526 A G 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9168;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 32978136 rs1763784 G A 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.2555;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 33015782 rs928701 G A 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 33018351 rs1414548 G C 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9168;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 33123774 rs11009107 T C 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.48;LDAF=0.2561;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 33123824 rs4448627 G C 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +10 33137515 rs2488294 T G 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.48;LDAF=0.2559;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 33137551 rs2504011 T C 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.2555;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 33143396 rs1418538 G A 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 33165226 rs2488305 G A 100 PASS AA=.;AC=2;AF=0.73;AFR_AF=0.59;AMR_AF=0.85;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.83;LDAF=0.7321;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 33190567 rs2153875 C A 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.20;AMR_AF=0.73;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.74;LDAF=0.5457;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 33209266 rs2230396 G T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.62;AMR_AF=0.86;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.7591;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 33214802 rs2298141 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1481;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 33219008 rs2256455 T G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.18;AMR_AF=0.63;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4917;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 33475282 rs2228638 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0969;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 33486667 rs10827208 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3209;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 33510614 rs4934837 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.32;AMR_AF=0.41;AN=2;ASN_AF=0.67;AVGPOST=0.9926;ERATE=0.0416;EUR_AF=0.32;LDAF=0.4269;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 33510663 rs4934838 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3529;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 33510768 rs2229934 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3529;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 33552696 rs7079053 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9978;ERATE=0.0058;EUR_AF=1.00;LDAF=0.9879;RSQ=0.9219;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 34620220 rs3781128 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.72;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 34666864 rs10740890 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.91;AMR_AF=0.55;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.46;LDAF=0.5640;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 34688287 rs2796011 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 35302705 rs12830 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.16;AMR_AF=0.33;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.37;LDAF=0.3003;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 35320355 rs17582954 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1205;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 35320383 rs3740083 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3473;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 35324076 rs2244174 A G 100 PASS AA=g;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9809;ERATE=0.0107;EUR_AF=0.99;LDAF=0.9811;RSQ=0.6287;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 35338699 rs7900480 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.46;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0022;EUR_AF=0.36;LDAF=0.3753;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 35426755 rs17499247 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.36;AMR_AF=0.36;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3492;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 35484949 rs1057108 T G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.34;AMR_AF=0.36;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3460;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 35772402 rs3802509 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.62;AMR_AF=0.48;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.31;LDAF=0.4328;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 35896957 rs595652 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.37;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2151;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 35928224 rs625858 C G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.69;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9920;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9124;RSQ=0.9681;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +10 37419292 rs116939015 G T 100 PASS AA=.;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0102;RSQ=0.9627;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 37508450 rs1148259 A C 100 PASS AA=a;AC=2;AF=0.49;AFR_AF=0.38;AMR_AF=0.46;AN=2;ASN_AF=0.71;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4869;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 43089965 rs210280 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7692;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +10 43287148 rs2272881 G A 100 PASS AA=g;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.06;AVGPOST=0.9987;ERATE=0.0012;EUR_AF=0.0013;LDAF=0.0216;RSQ=0.9763;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-3.27,-0.00,-5.00 +10 43288074 rs191521695 T C 100 PASS AA=t;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0031;RSQ=0.9347;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.85 +10 43288626 rs9422671 T G 100 PASS AA=N;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0668;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 43595968 rs1800858 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.91;AMR_AF=0.78;AN=2;ASN_AF=0.53;AVGPOST=0.9760;ERATE=0.0170;EUR_AF=0.70;LDAF=0.7126;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 43612226 rs760466 C T 100 PASS AA=C;AC=2;AF=0.15;AFR_AF=0.03;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1562;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 43613843 rs1800861 G T 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.90;AMR_AF=0.77;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.76;LDAF=0.7235;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 43622217 rs2075912 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7614;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +10 43659536 rs2503865 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.81;AMR_AF=0.78;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.76;LDAF=0.6732;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 43883342 rs1126487 T A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.91;AMR_AF=0.40;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4899;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 44104101 rs45545532 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0754;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 44111806 rs10899839 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.30;AN=2;ASN_AF=0.05;AVGPOST=0.9991;ERATE=0.0012;EUR_AF=0.25;LDAF=0.2599;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 44112214 rs7478426 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0695;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 44112763 rs7069748 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0422;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 44874216 rs2236533 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.41;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2088;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 45430462 rs17417442 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.29;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3559;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 45496120 rs12269028 A T 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.26;AMR_AF=0.67;AN=2;ASN_AF=0.36;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.64;LDAF=0.4853;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 45869700 rs72561472 G C 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.20;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9547;ERATE=0.0046;EUR_AF=0.18;LDAF=0.1843;RSQ=0.8802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +10 45869713 rs4987106 C G 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.20;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9865;ERATE=0.0010;EUR_AF=0.17;LDAF=0.1735;RSQ=0.9639;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +10 45869748 rs4987105 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.19;AVGPOST=0.9906;ERATE=0.0006;EUR_AF=0.18;LDAF=0.1656;RSQ=0.9735;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.13,-0.47,-0.18 +10 45869895 rs111916157 A G 100 PASS AA=g;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.16;AN=2;ASN_AF=0.19;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1903;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.80 +10 45869903 rs111528152 A G 100 PASS AA=g;AC=1;AF=0.18;AFR_AF=0.19;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9917;ERATE=0.0007;EUR_AF=0.18;LDAF=0.1806;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-2.09,-0.00,-3.70 +10 45877899 rs28395865 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.19;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1655;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 45924023 rs1565096 G A 100 PASS AA=g;AC=2;AF=0.82;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8209;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 45924256 rs1565097 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.79;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7798;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 45939136 rs7900977 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.92;AMR_AF=0.79;AN=2;ASN_AF=0.78;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.77;LDAF=0.8087;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.50,-0.01 +10 45953767 rs7908745 A G 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.35;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3085;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 46143958 rs17854567 T G 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.15;LDAF=0.0919;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 46965018 rs3127785 C G 100 PASS AA=.;AC=1;AF=0.45;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.38;AVGPOST=0.9819;ERATE=0.0079;EUR_AF=0.50;LDAF=0.4553;RSQ=0.9091;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-1.69,-0.01,-5.00 +10 46965727 rs1889849 G A 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.47;AVGPOST=0.9901;ERATE=0.0063;EUR_AF=0.52;LDAF=0.5065;RSQ=0.8963;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46967672 rs2152530 C T 100 PASS AA=.;AC=1;AF=0.54;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.51;AVGPOST=0.9899;ERATE=0.0005;EUR_AF=0.53;LDAF=0.5364;RSQ=0.8939;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46968762 rs3127790 C G 100 PASS AA=g;AC=1;AF=0.52;AFR_AF=0.53;AMR_AF=0.52;AN=2;ASN_AF=0.51;AVGPOST=0.9904;ERATE=0.0009;EUR_AF=0.53;LDAF=0.5210;RSQ=0.8518;SNPSOURCE=EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46969496 rs3127792 A G 100 PASS AA=a;AC=1;AF=0.53;AFR_AF=0.56;AMR_AF=0.52;AN=2;ASN_AF=0.51;AVGPOST=0.9812;ERATE=0.0059;EUR_AF=0.53;LDAF=0.5304;RSQ=0.7786;SNPSOURCE=EXOME;THETA=0.0090;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46998894 rs3127817 G A 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9920;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5061;RSQ=0.5698;SNPSOURCE=EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46998995 rs4926045 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.38;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9899;ERATE=0.0019;EUR_AF=0.49;LDAF=0.4610;RSQ=0.8984;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46998999 rs3127818 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9945;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5042;RSQ=0.5194;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 46999019 rs3127819 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4996;RSQ=0.3154;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46999190 rs3127679 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.75;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9839;ERATE=0.0008;EUR_AF=0.88;LDAF=0.8676;RSQ=0.9422;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.06,-0.00 +10 46999465 rs3127682 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5008;RSQ=0.7469;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 46999484 rs11204658 G T 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4693;RSQ=0.9861;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46999732 rs4579877 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.40;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9983;ERATE=0.0018;EUR_AF=0.49;LDAF=0.4705;RSQ=0.9794;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 46999747 rs3127821 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5006;RSQ=0.7287;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47000004 rs3127822 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9567;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 47000071 rs4244614 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.40;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9984;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4693;RSQ=0.9792;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 47000079 rs3127823 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9984;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5015;RSQ=0.6933;SNPSOURCE=EXOME;THETA=0.0125;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47000146 rs3127684 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.57;AMR_AF=0.55;AN=2;ASN_AF=0.54;AVGPOST=0.9766;ERATE=0.0172;EUR_AF=0.56;LDAF=0.5546;RSQ=0.8322;SNPSOURCE=EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-2.57,-0.00,-5.00 +10 47000188 rs3127824 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9967;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9620;RSQ=0.9646;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.87,-0.01 +10 47000239 rs7912299 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.47;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9730;ERATE=0.0019;EUR_AF=0.50;LDAF=0.4963;RSQ=0.4598;SNPSOURCE=EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +10 47086915 rs59974223 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.19;AMR_AF=0.17;AN=2;ASN_AF=0.34;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2146;RSQ=0.9978;SNPSOURCE=EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47086978 rs3740294 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.10;AMR_AF=0.15;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1909;RSQ=0.9979;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47087371 rs1048156 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.29;LDAF=0.1418;RSQ=0.9989;SNPSOURCE=EXOME;THETA=0.0167;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 47087474 rs1129838 C T 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.81;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9953;ERATE=0.0005;EUR_AF=0.72;LDAF=0.8300;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47087501 rs3824733 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.09;AMR_AF=0.32;AN=2;ASN_AF=0.47;AVGPOST=0.9958;ERATE=0.0317;EUR_AF=0.29;LDAF=0.2974;RSQ=0.9869;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47087608 rs1936339 T C 100 PASS AA=t;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9737;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 47087680 rs1048157 C T 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.82;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9949;ERATE=0.0009;EUR_AF=0.73;LDAF=0.8352;RSQ=0.9837;SNPSOURCE=EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47087731 rs1048158 C T 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=0.9955;ERATE=0.0029;EUR_AF=0.73;LDAF=0.8367;RSQ=0.9859;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47087830 rs1129839 G A 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=0.9944;ERATE=0.0057;EUR_AF=0.76;LDAF=0.8484;RSQ=0.9809;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 47756004 rs3013885 T C 100 PASS AA=.;AC=2;AF=0.84;AFR_AF=0.74;AMR_AF=0.86;AN=2;ASN_AF=0.88;AVGPOST=0.8323;ERATE=0.0058;EUR_AF=0.86;LDAF=0.7933;RSQ=0.6657;SNPSOURCE=LOWCOV,EXOME;THETA=0.0226;VT=SNP GT:DS:GL 1|1:1.800:-0.48,-0.48,-0.48 +10 47915898 rs183064568 A G 100 PASS AA=.;AC=1;AF=0.23;AFR_AF=0.26;AMR_AF=0.27;AN=2;ASN_AF=0.11;AVGPOST=0.8029;ERATE=0.0093;EUR_AF=0.27;LDAF=0.2922;RSQ=0.5751;SNPSOURCE=LOWCOV,EXOME;THETA=0.0230;VT=SNP GT:DS:GL 0|1:1.000:-1.74,-0.01,-3.49 +10 47915977 rs201484861 A T 100 PASS AA=.;AC=2;AF=0.42;AFR_AF=0.43;AMR_AF=0.40;AN=2;ASN_AF=0.60;AVGPOST=0.7571;ERATE=0.0063;EUR_AF=0.30;LDAF=0.4296;RSQ=0.6662;SNPSOURCE=EXOME;THETA=0.0130;VT=SNP GT:DS:GL 1|1:1.500:-3.04,-0.47,-0.18 +10 48370595 rs11204210 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.30;AMR_AF=0.27;AN=2;ASN_AF=0.49;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3610;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 48390890 rs41284964 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0914;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.08 +10 48414570 rs7923671 A G 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.68;AMR_AF=0.88;AN=2;ASN_AF=0.84;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.95;LDAF=0.8452;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 48426798 rs743509 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.09;AMR_AF=0.62;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5112;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 48428941 rs35421500 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0531;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 48438734 rs1126827 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.56;AMR_AF=0.77;AN=2;ASN_AF=0.69;AVGPOST=0.9958;ERATE=0.0006;EUR_AF=0.77;LDAF=0.7010;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +10 49392575 rs931743 C G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.66;AMR_AF=0.55;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5787;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 49450443 rs280612 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.67;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8920;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.33,-0.00 +10 49654403 rs1051507 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.31;AMR_AF=0.53;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.61;LDAF=0.5365;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 49661341 rs7092959 A G 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.51;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8611;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 49667713 rs1867575 G A 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.62;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9063;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 49667795 rs3853761 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.62;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9100;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 49687800 rs4080665 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.50;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7980;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.17,-0.00 +10 49687850 rs3888298 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.34;AMR_AF=0.18;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2972;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 49763618 rs1838570 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1394;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 49790972 rs2289808 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.18;AMR_AF=0.40;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4035;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 50121784 rs10776653 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=0.9946;ERATE=0.0383;EUR_AF=0.47;LDAF=0.5395;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50122181 rs7094610 C A 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.09;AMR_AF=0.31;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3739;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50227785 rs1913525 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9447;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50227870 rs1913524 C T 100 PASS AA=T;AC=1;AF=0.89;AFR_AF=0.68;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8866;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 50315893 rs13088 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.76;AMR_AF=0.47;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.38;LDAF=0.4365;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50531214 rs4838383 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1087;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50531549 rs56206226 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2176;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50531604 rs7093235 T C 100 PASS AA=t;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9652;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50531606 rs55780106 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2176;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50531972 rs45554335 A C 100 PASS AA=a;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2183;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50532683 rs7921186 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9677;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50594509 rs12261515 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.24;AMR_AF=0.23;AN=2;ASN_AF=0.54;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3098;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50667105 rs2228529 T C 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1564;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50678369 rs2228527 T C 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1636;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50678717 rs2228526 T C 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1572;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50691360 rs4253162 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.69;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8775;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50701156 rs4253132 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.68;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8653;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.28,-0.00 +10 50723684 rs4253073 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.69;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8776;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50724016 rs4253072 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50740876 rs2228524 G C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.36;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5827;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50818762 rs1880675 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.59;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.99;LDAF=0.8437;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.87,-0.06 +10 50820345 rs8187730 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9972;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50827721 rs4838537 C T 100 PASS AA=C;AC=2;AF=0.12;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1181;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +10 50828506 rs1880677 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9703;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50854767 rs11101192 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0772;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +10 50856652 rs4838544 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9672;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +10 50863147 rs8178992 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.65;AMR_AF=0.80;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7998;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50901809 rs1153797 T G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8981;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50901938 rs1133837 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.40;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3670;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50902684 rs1055421 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.40;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9980;ERATE=0.0011;EUR_AF=0.50;LDAF=0.3678;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50916484 rs1258236 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.54;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8538;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 50916542 rs4838554 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.45;AMR_AF=0.42;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3817;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 50944613 rs1258258 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.09;AMR_AF=0.51;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4922;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 50947918 rs1258259 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.73;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9136;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +10 50950976 rs11101224 G A 100 PASS AA=g;AC=1;AF=0.19;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1874;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 50953830 rs7910114 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.43;AMR_AF=0.26;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2212;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 50960166 rs2304635 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1902;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 50960209 rs1258184 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.15;AMR_AF=0.52;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5187;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 51465650 rs199898426 C T 100 PASS AA=.;AC=2;AF=0.45;AFR_AF=0.10;AMR_AF=0.55;AN=2;ASN_AF=0.51;AVGPOST=0.9094;ERATE=0.0009;EUR_AF=0.59;LDAF=0.4485;RSQ=0.8758;SNPSOURCE=EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.10,-0.04 +10 51465920 rs4043622 G A 100 PASS AA=.;AC=2;AF=0.41;AFR_AF=0.12;AMR_AF=0.50;AN=2;ASN_AF=0.47;AVGPOST=0.8651;ERATE=0.0075;EUR_AF=0.52;LDAF=0.4088;RSQ=0.8013;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.75,-0.09 +10 51549545 rs4935176 G T 100 PASS AA=t;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9589;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 51827763 rs4935425 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.62;AVGPOST=0.9935;ERATE=0.0007;EUR_AF=0.20;LDAF=0.2816;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-2.26,-0.01,-1.73 +10 51952509 rs199967962 C A 100 PASS AA=c;AC=2;AF=0.80;AFR_AF=0.44;AMR_AF=0.88;AN=2;ASN_AF=0.94;AVGPOST=0.6420;ERATE=0.0291;EUR_AF=0.90;LDAF=0.6774;RSQ=0.3263;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:1.250:-0.48,-0.48,-0.48 +10 52002980 rs3739979 T G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.51;AMR_AF=0.16;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2870;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 52005153 rs7097319 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.59;AMR_AF=0.18;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.3094;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 52086939 rs2246994 C G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.89;AMR_AF=0.60;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6805;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 52103707 rs10763354 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.52;AMR_AF=0.64;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5374;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 52509066 rs144446949 G T 100 PASS AA=g;AC=2;AF=0.77;AFR_AF=0.39;AMR_AF=0.82;AN=2;ASN_AF=0.97;AVGPOST=0.9540;ERATE=0.0044;EUR_AF=0.83;LDAF=0.7578;RSQ=0.9168;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.63,-0.12 +10 52566594 rs34190540 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0478;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 52576068 rs4245008 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.60;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8231;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 53921754 rs10824173 C A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.66;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.79;LDAF=0.7322;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0217;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +10 54528266 rs930507 G C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7708;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 54528298 rs930508 G C 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.67;AMR_AF=0.84;AN=2;ASN_AF=0.75;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.81;LDAF=0.7666;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 55582905 rs10825114 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.21;AMR_AF=0.19;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.04;LDAF=0.2920;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 55591313 rs7089209 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.30;AMR_AF=0.38;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4561;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 55626367 rs10825135 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.40;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2530;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 55719652 rs2593107 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.66;AMR_AF=0.78;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.70;LDAF=0.7504;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 55779915 rs3812658 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.26;AMR_AF=0.73;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.5064;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 55826470 rs3812657 A G 100 PASS AA=a;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1659;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 55943184 rs7093302 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.89;AMR_AF=0.67;AN=2;ASN_AF=0.12;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6121;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 55955444 rs4935502 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.12;LDAF=0.3369;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 56077209 rs10740579 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.76;AMR_AF=0.66;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.76;LDAF=0.6024;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 56423968 rs11004439 A C 100 PASS AA=A;AC=2;AF=0.21;AFR_AF=0.14;AMR_AF=0.29;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2088;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 60273121 rs7100474 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.65;AMR_AF=0.36;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5011;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 60558125 rs2393503 A T 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6410;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 60559047 rs2893789 G C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.82;AMR_AF=0.79;AN=2;ASN_AF=0.86;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8046;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.72,-0.00 +10 60573753 rs9416746 G T 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7628;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 60577393 rs4344442 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.76;AMR_AF=0.76;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.72;LDAF=0.7499;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 60588553 rs4948550 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.36;AMR_AF=0.70;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6355;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 60996453 rs10763600 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 61005244 rs2452505 G C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.45;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.87;LDAF=0.7729;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 61007534 rs1459996 A G 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.43;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7678;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 61414011 rs2242206 G T 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3263;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 61443808 rs1171660 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4828;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 61552692 rs1053266 G T 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.22;AMR_AF=0.58;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4578;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 61552774 rs1053265 C T 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.36;AMR_AF=0.78;AN=2;ASN_AF=0.64;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6402;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 61665886 rs1171830 C A 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.04;AMR_AF=0.45;AN=2;ASN_AF=0.60;AVGPOST=0.9985;ERATE=0.0021;EUR_AF=0.46;LDAF=0.4012;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 61802550 rs9888033 A T 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.60;AMR_AF=0.54;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6133;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 61802561 rs2393607 G T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.62;AMR_AF=0.63;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7216;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 61819049 rs10733757 T G 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8304;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 61831271 rs10821668 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1454;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 61831744 rs10740006 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1449;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 61833499 rs3802696 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0434;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 61868716 rs3750800 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.07;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.31;LDAF=0.1792;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 62551889 rs2456777 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9827;ERATE=0.0277;EUR_AF=0.65;LDAF=0.6381;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 62551890 rs2456778 A T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.60;AMR_AF=0.69;AN=2;ASN_AF=0.73;AVGPOST=0.9856;ERATE=0.0249;EUR_AF=0.66;LDAF=0.6705;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 62553763 rs1871446 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.66;AMR_AF=0.75;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7605;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 62634839 rs12251212 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.14;AN=2;ASN_AF=0.14;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1339;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 62671305 rs2271126 G A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.62;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2902;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 63520698 rs1992625 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.88;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8556;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 63699895 rs7073837 A C 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.76;AMR_AF=0.52;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.62;LDAF=0.6435;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 63958112 rs3125734 T C 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.34;AMR_AF=0.67;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6484;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 63982984 rs10740069 A G 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.73;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7979;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 63995983 rs3852448 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9164;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 64000878 rs1368158 T G 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.73;AMR_AF=0.80;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7952;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 64005711 rs3815999 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.61;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7660;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 64148125 rs3852424 C A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9533;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 64148360 rs74156188 G T 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 64148369 rs2893897 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9940;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +10 64159333 rs3758490 G T 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.07;AMR_AF=0.52;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4868;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 64415184 rs7076156 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.97;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.8483;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 64564892 rs2236295 G T 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.16;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.36;LDAF=0.2204;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +10 64564934 rs10995311 C G 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.05;AMR_AF=0.29;AN=2;ASN_AF=0.16;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.41;LDAF=0.2426;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.55,-0.00,-2.79 +10 64573771 rs224083 C T 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 64945364 rs3211105 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.31;AMR_AF=0.61;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6102;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 64967445 rs1904294 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9863;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 64974380 rs41274074 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.09;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0768;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 65225244 rs1061259 G C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.27;AMR_AF=0.59;AN=2;ASN_AF=0.61;AVGPOST=0.9310;ERATE=0.0188;EUR_AF=0.73;LDAF=0.5573;RSQ=0.9054;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +10 65225245 rs10761770 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.82;AMR_AF=0.97;AN=2;ASN_AF=0.97;AVGPOST=0.9519;ERATE=0.0069;EUR_AF=0.94;LDAF=0.9133;RSQ=0.7843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +10 67726514 rs2105702 A C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.44;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.26;LDAF=0.3408;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 68040325 rs4548513 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4717;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 69281585 rs10997691 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.13;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1613;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 69647332 rs932657 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0072;EUR_AF=0.99;LDAF=0.9828;RSQ=0.9356;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69651125 rs7896005 A G 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.09;AMR_AF=0.50;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.3743;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69692330 rs3758392 T C 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.09;AMR_AF=0.50;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.3752;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69926097 rs2673794 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.28;AMR_AF=0.64;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4968;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69926334 rs10823148 C G 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.13;AMR_AF=0.43;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3377;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69933921 rs10997975 G A 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.20;AMR_AF=0.42;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3593;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69933969 rs7916821 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.21;AMR_AF=0.42;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3451;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69934258 rs3814182 C G 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.49;AMR_AF=0.50;AN=2;ASN_AF=0.34;AVGPOST=0.9973;ERATE=0.0333;EUR_AF=0.57;LDAF=0.4801;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69935059 rs7097776 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.50;AMR_AF=0.68;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5625;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69935235 rs6480306 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0096;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69948844 rs10733838 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69954290 rs7081213 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3757;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +10 69959097 rs7079549 G T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.41;AMR_AF=0.69;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5658;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 69959242 rs7079481 C A 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3607;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70045201 rs7909365 C A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70051810 rs80227066 A G 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.66;AMR_AF=0.78;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7987;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70051928 rs10823171 A G 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.61;AMR_AF=0.76;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7742;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70056600 rs59822399 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.66;AMR_AF=0.78;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7979;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70105560 rs1162753 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.77;AMR_AF=0.83;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8340;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70143774 rs7899885 C T 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.40;AMR_AF=0.73;AN=2;ASN_AF=0.85;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7098;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70166913 rs59831114 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.98;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9901;ERATE=0.0009;EUR_AF=0.95;LDAF=0.9675;RSQ=0.8618;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-0.89,-0.39,-0.33 +10 70253350 rs41278516 G A 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0663;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 70266523 rs2275715 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.34;AMR_AF=0.32;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2308;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 70332066 rs3814177 C T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.32;AMR_AF=0.48;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4919;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 70332580 rs10823229 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.03;AMR_AF=0.29;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2816;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 70405855 rs3998860 A G 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.47;AMR_AF=0.75;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7317;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 70502288 rs1300253 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8560;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70513684 rs5030887 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.35;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0941;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 70641860 rs1341667 T C 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.35;AMR_AF=0.55;AN=2;ASN_AF=0.90;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6308;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70696713 rs5030895 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70700944 rs5030900 A G 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.50;AMR_AF=0.57;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6673;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70716106 rs5030896 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70725128 rs3898314 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.17;LDAF=0.2568;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 70733266 rs5030899 T G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.21;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2563;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 70748784 rs2255607 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.34;AMR_AF=0.37;AN=2;ASN_AF=0.39;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4029;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 70856852 rs2805910 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.31;AMR_AF=0.65;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.85;LDAF=0.6089;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 70863699 rs4892 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.23;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0713;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 70992664 rs874556 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.59;AMR_AF=0.41;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5470;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 70992912 rs5030970 A T 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.59;AMR_AF=0.41;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5471;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71000540 rs3740598 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.06;AN=2;ASN_AF=0.17;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0830;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71000541 rs3740599 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.06;AN=2;ASN_AF=0.17;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0830;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71010026 rs4745978 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9934;RSQ=0.9701;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71010375 rs5030948 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1641;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 71018660 rs1111335 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71055459 rs4746837 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.61;AMR_AF=0.60;AN=2;ASN_AF=0.83;AVGPOST=0.9993;ERATE=0.0014;EUR_AF=0.73;LDAF=0.7050;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71060610 rs906220 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.80;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9090;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71060634 rs906221 G A 100 PASS AA=A;AC=1;AF=0.91;AFR_AF=0.80;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71129194 rs41279656 C T 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0411;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71142420 rs748235 G A 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.90;AMR_AF=0.67;AN=2;ASN_AF=0.64;AVGPOST=0.9989;ERATE=0.0034;EUR_AF=0.77;LDAF=0.7491;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 71144702 rs749105 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.82;AMR_AF=0.60;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6496;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 71168685 rs55953810 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.0578;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +10 71392501 rs2616088 G C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.61;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7241;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71392557 rs12020 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.59;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.68;LDAF=0.7202;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71392692 rs1052152 T C 100 PASS AA=t;AC=2;AF=0.73;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7263;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71562437 rs10998973 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.31;AMR_AF=0.64;AN=2;ASN_AF=0.72;AVGPOST=0.9982;ERATE=0.0011;EUR_AF=0.57;LDAF=0.5626;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71634969 rs59942449 G A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.30;AMR_AF=0.29;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1888;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71640255 rs2395272 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.22;AMR_AF=0.24;AN=2;ASN_AF=0.45;AVGPOST=0.9934;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2650;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +10 71657272 rs1227746 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71658512 rs1227747 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 71678058 rs2274181 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1952;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 71685532 rs1227778 G C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.63;AMR_AF=0.62;AN=2;ASN_AF=0.55;AVGPOST=0.9947;ERATE=0.0007;EUR_AF=0.64;LDAF=0.6130;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +10 71697516 rs3750781 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.32;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.26;LDAF=0.3249;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 71849772 rs16927265 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1796;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 71868763 rs2271698 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.15;AMR_AF=0.53;AN=2;ASN_AF=0.37;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.72;LDAF=0.4684;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71874048 rs1053495 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.25;AMR_AF=0.08;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1513;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 71876382 rs2394656 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.37;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=0.9988;ERATE=0.0009;EUR_AF=0.78;LDAF=0.6442;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 71905569 rs3750774 C A 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.50;AN=2;ASN_AF=0.58;AVGPOST=0.9925;ERATE=0.0009;EUR_AF=0.42;LDAF=0.4152;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.11,-0.47,-0.18 +10 71906150 rs4746970 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.49;AN=2;ASN_AF=0.58;AVGPOST=0.9960;ERATE=0.0008;EUR_AF=0.42;LDAF=0.4136;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.43,-0.21,-2.14 +10 71969062 rs9415006 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9337;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 71990196 rs7904074 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9945;ERATE=0.0048;EUR_AF=0.37;LDAF=0.3535;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72061079 rs10740336 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9903;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 72083835 rs3750764 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0781;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72181460 rs3793809 G T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.71;AMR_AF=0.78;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7984;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72195439 rs1904589 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.48;AMR_AF=0.67;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6563;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72298631 rs1122918 T C 100 PASS AA=c;AC=1;AF=0.92;AFR_AF=0.76;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9233;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72324143 rs7093516 A G 100 PASS AA=g;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9677;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 72326318 rs12412625 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.41;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.23;LDAF=0.2049;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72358577 rs885822 G A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.83;AMR_AF=0.63;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6898;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 72500763 rs10823607 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.71;AMR_AF=0.75;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8249;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +10 72500824 rs75615682 C T 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0293;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 72500863 rs10999500 C G 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.70;AMR_AF=0.59;AN=2;ASN_AF=0.85;AVGPOST=0.9992;ERATE=0.0009;EUR_AF=0.63;LDAF=0.6961;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 72513682 rs2587475 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.50;AMR_AF=0.63;AN=2;ASN_AF=0.47;AVGPOST=0.9927;ERATE=0.0021;EUR_AF=0.54;LDAF=0.5309;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72517837 rs6480463 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5219;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72532238 rs2253801 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.44;AMR_AF=0.54;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4435;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72535007 rs2254174 C T 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.81;AMR_AF=0.74;AN=2;ASN_AF=0.60;AVGPOST=0.9989;ERATE=0.0026;EUR_AF=0.87;LDAF=0.7637;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 72536936 rs2254433 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.32;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.30;LDAF=0.2327;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 72537086 rs4747099 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1033;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72614421 rs2171157 T C 100 PASS AA=t;AC=1;AF=0.36;AFR_AF=0.23;AMR_AF=0.39;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3565;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72619205 rs827255 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9881;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 72629683 rs75121822 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0650;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72636450 rs923177 T G 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.75;AMR_AF=0.74;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7486;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 72643671 rs9712 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.75;AMR_AF=0.74;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7485;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 73044580 rs12770025 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.47;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.68;LDAF=0.5367;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 73051440 rs10509332 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0300;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73053436 rs56312213 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.12;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0302;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73082563 rs2277257 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.68;AMR_AF=0.36;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4497;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73104056 rs2243540 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.87;AMR_AF=0.87;AN=2;ASN_AF=0.68;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.90;LDAF=0.8286;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 73111408 rs780668 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.30;AMR_AF=0.58;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5289;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 73115941 rs2252997 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9878;ERATE=0.0458;EUR_AF=0.70;LDAF=0.6510;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 73115942 rs2252996 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.65;AMR_AF=0.64;AN=2;ASN_AF=0.56;AVGPOST=0.9818;ERATE=0.0303;EUR_AF=0.71;LDAF=0.6448;RSQ=0.9751;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 73121913 rs2487068 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.95;AMR_AF=0.72;AN=2;ASN_AF=0.68;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.85;LDAF=0.8059;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 73121945 rs1084004 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9990;ERATE=0.0033;EUR_AF=0.89;LDAF=0.7863;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73270906 rs3802720 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.98;AMR_AF=0.56;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7569;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73270982 rs3802719 G A 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.95;AMR_AF=0.55;AN=2;ASN_AF=0.77;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7491;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73270995 rs3802718 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.97;AMR_AF=0.55;AN=2;ASN_AF=0.77;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7525;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73377069 rs7903475 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.23;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0576;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73377163 rs7903502 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0162;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73515103 rs3747858 G T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.79;AMR_AF=0.55;AN=2;ASN_AF=0.53;AVGPOST=0.9985;ERATE=0.0022;EUR_AF=0.64;LDAF=0.6302;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73520632 rs3747869 A C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.89;LDAF=0.8779;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73521578 rs3747866 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.52;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1823;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73521830 rs41281326 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.53;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1827;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73767859 rs3740129 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.38;AN=2;ASN_AF=0.09;AVGPOST=0.9645;ERATE=0.0044;EUR_AF=0.40;LDAF=0.2916;RSQ=0.9405;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.49 +10 73822507 rs1530803 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2847;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73956553 rs56902153 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.50;AMR_AF=0.05;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1590;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 73992862 rs9275 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.26;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0640;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 74104673 rs3793834 T A 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.23;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0740;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 74671611 rs3750736 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.33;LDAF=0.3540;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 74684417 rs16930172 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.80;AMR_AF=0.10;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.06;LDAF=0.2952;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 74767998 rs34162681 C G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0507;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 74834651 rs4405231 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.40;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2102;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 74886598 rs7072086 C G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.56;AMR_AF=0.12;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2678;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 74897816 rs2271905 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.39;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2102;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 74899134 rs3736518 C G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.39;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2102;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 74912004 rs7069878 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.39;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 74914256 rs11000530 T G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.39;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 74923562 rs3812619 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.40;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2107;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75006804 rs35302968 A G 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.38;AMR_AF=0.11;AN=2;ASN_AF=0.32;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2085;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.06,-0.92,-5.00 +10 75010597 rs7075371 A G 100 PASS AA=a;AC=1;AF=0.04;AFR_AF=0.15;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75011761 rs7905009 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.02;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0410;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75035257 rs4294502 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.38;AMR_AF=0.11;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2089;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75037980 rs7899308 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0445;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75071618 rs78334417 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0412;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75108146 rs3812622 T G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.53;AMR_AF=0.12;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2637;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75184323 rs61738877 G A 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0434;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75184463 rs61753915 A C 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0434;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75184843 rs7918817 A T 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75185748 rs61744605 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75185810 rs61740737 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0411;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75206378 rs3729975 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.15;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0023;EUR_AF=0.01;LDAF=0.0396;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75234826 rs3763679 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.38;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75265136 rs7083344 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0393;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75335461 rs75355799 G T 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0521;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75407887 rs57006992 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.23;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0660;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.45 +10 75525999 rs3849969 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.50;AMR_AF=0.55;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5210;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75533448 rs3740289 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.24;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0687;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 75558867 rs2271271 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.49;AMR_AF=0.55;AN=2;ASN_AF=0.23;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.74;LDAF=0.5191;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75560160 rs181929079 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0021;RSQ=0.8962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 75562161 rs13013 C A 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.31;AMR_AF=0.43;AN=2;ASN_AF=0.08;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.60;LDAF=0.3696;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75673101 rs2227564 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7969;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75843100 rs1908339 T A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.91;AMR_AF=0.58;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.7359;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 75849991 rs73280468 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0201;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 75871722 rs16931179 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0265;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 75871735 rs2131956 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.76;AMR_AF=0.66;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6463;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 75873892 rs10824072 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.34;AMR_AF=0.49;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4406;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 75896601 rs10762576 A C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6102;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 75936611 rs10824095 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.76;AMR_AF=0.66;AN=2;ASN_AF=0.40;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.76;LDAF=0.6489;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.00 +10 76719679 rs4746249 C A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.80;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.3875;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 76803548 rs114881123 C T 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.16;AMR_AF=0.10;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1041;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 76803567 rs16931938 T G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.68;AMR_AF=0.20;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.04;LDAF=0.2779;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 76854564 rs3088142 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.68;AMR_AF=0.63;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6508;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 76855326 rs3740318 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.41;AMR_AF=0.37;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4191;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 76855412 rs3740317 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.40;AMR_AF=0.37;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4159;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 76855421 rs3740316 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2285;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 78778734 rs16934182 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.31;AMR_AF=0.53;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.67;LDAF=0.3923;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +10 78944590 rs1131824 G A 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.68;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3825;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 79552151 rs1058202 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.85;AMR_AF=0.78;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7362;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 79565655 rs2289311 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2788;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 79566632 rs1058198 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 79579047 rs1248635 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.78;AMR_AF=0.76;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7129;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 79579222 rs1248634 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2587;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 79579251 rs2289308 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2268;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.14,-0.56 +10 79580976 rs41274586 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 79584178 rs1248629 G C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.86;AMR_AF=0.77;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7328;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 79584274 rs41306534 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.05;AN=2;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0351;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 79595473 rs1781797 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.42;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2657;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 79616605 rs1248696 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9582;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 79628875 rs1248655 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.90;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7528;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 79737415 rs10219086 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0251;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 79742617 rs3781180 G T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.37;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=0.9989;ERATE=0.0493;EUR_AF=0.08;LDAF=0.1791;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 79769668 rs56214655 T A 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0128;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 79793688 rs3740253 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.26;AMR_AF=0.55;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.60;LDAF=0.4767;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 81060474 rs1250549 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.65;AMR_AF=0.46;AN=2;ASN_AF=0.73;AVGPOST=0.9987;ERATE=0.0017;EUR_AF=0.42;LDAF=0.5630;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 81065371 rs113334887 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0108;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 81318621 rs17884396 C T 100 PASS AA=N;AC=1;AF=0.30;AFR_AF=0.53;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9962;ERATE=0.0128;EUR_AF=0.25;LDAF=0.3029;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 81319214 rs1059046 G T 100 PASS AA=N;AC=1;AF=0.39;AFR_AF=0.23;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9080;ERATE=0.0552;EUR_AF=0.47;LDAF=0.3880;RSQ=0.8706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.59 +10 81371729 rs1136450 C G 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.34;AMR_AF=0.42;AN=2;ASN_AF=0.29;AVGPOST=0.9463;ERATE=0.0338;EUR_AF=0.53;LDAF=0.4066;RSQ=0.9292;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-1.87,-0.01,-3.59 +10 81697811 rs4469829 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0302;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 81697818 rs1051246 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.24;AMR_AF=0.28;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1467;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 81701722 rs2243639 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.98;AMR_AF=0.65;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7415;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0123;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 81706324 rs721917 A G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.41;AMR_AF=0.41;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4676;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 81904638 rs2819874 G A 100 PASS AA=g;AC=1;AF=0.53;AFR_AF=0.36;AMR_AF=0.62;AN=2;ASN_AF=0.59;AVGPOST=0.9957;ERATE=0.0017;EUR_AF=0.54;LDAF=0.5274;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.05,-0.95 +10 81917708 rs1079242 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.4575;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 81926702 rs1049550 G A 100 PASS AA=.;AC=1;AF=0.42;AFR_AF=0.15;AMR_AF=0.42;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4256;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 82033594 rs2993763 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.77;AMR_AF=0.56;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.5356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 82033683 rs4933327 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2477;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 82034262 rs2994388 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.78;AMR_AF=0.56;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.5366;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 82034842 rs10887711 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.90;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.64;LDAF=0.8022;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.98,-0.00 +10 82034854 rs10788546 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.90;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.8037;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.02,-0.00 +10 82040052 rs1143694 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.97;AMR_AF=0.77;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.67;LDAF=0.8313;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 82095968 rs1340383 T G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.94;AMR_AF=0.74;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.67;LDAF=0.8200;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 82182296 rs1870142 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.8506;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 82269238 rs10785897 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.35;AMR_AF=0.53;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.5781;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 82298291 rs150879511 A G 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0105;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.83,-0.01,-1.65 +10 82331347 rs59617064 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2884;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 82363340 rs7069048 C A 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.47;AMR_AF=0.29;AN=2;ASN_AF=0.53;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3766;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.47 +10 82363404 rs7075840 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.42;AMR_AF=0.28;AN=2;ASN_AF=0.53;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3656;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 82369226 rs76769317 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0160;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 82403836 rs113555087 G A 100 PASS AA=G;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0009;RSQ=0.9294;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 84718677 rs17101139 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.24;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1052;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 84744926 rs17101193 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0864;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 84745040 rs17101196 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0864;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 85902394 rs3816716 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2053;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 85960395 rs4933975 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.71;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.5018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 85972043 rs10749482 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.77;AMR_AF=0.34;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.4022;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 85974236 rs3814213 T C 100 PASS AA=t;AC=2;AF=0.56;AFR_AF=0.84;AMR_AF=0.55;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5622;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 85974381 rs3814212 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.93;AMR_AF=0.64;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6244;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 85981801 rs6585847 T G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.83;AMR_AF=0.52;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5375;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 85992478 rs3814210 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.86;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 85992511 rs3814209 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.86;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4744;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 85993836 rs4933986 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9913;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 85993910 rs3814206 G A 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.88;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.48;LDAF=0.5466;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 85994142 rs3829858 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.92;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.48;LDAF=0.5562;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 85996968 rs4933988 A C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.85;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4296;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 85997250 rs10887259 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.85;AMR_AF=0.39;AN=2;ASN_AF=0.20;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.37;LDAF=0.4348;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.17,-0.00,-3.27 +10 86004873 rs2279227 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.97;AMR_AF=0.58;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.6019;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 86185654 rs1336202 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 87407163 rs17105747 C G 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.18;AMR_AF=0.05;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0040;LDAF=0.0745;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 87675994 rs35815235 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0197;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 87898729 rs17106320 G A 100 PASS AA=g;AC=1;AF=0.15;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1526;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 88126056 rs11202000 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9643;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +10 88203068 rs7094132 T C 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.8103;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 88213604 rs6586011 A G 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.35;AMR_AF=0.34;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3845;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 88230874 rs2288362 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.67;AMR_AF=0.67;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.86;LDAF=0.7207;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 88256943 rs4934215 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9626;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 88260455 rs201850920 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +10 88419012 rs3740334 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.25;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2502;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 88419641 rs3740335 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.25;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2495;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 88422116 rs1079610 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.81;AMR_AF=0.76;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.63;LDAF=0.7325;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.59,-0.01 +10 88423492 rs12262894 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0002;LDAF=0.0089;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88423523 rs33936589 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.02;AN=2;AVGPOST=0.9988;ERATE=0.0004;LDAF=0.0324;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.64 +10 88445385 rs3740345 G C 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.61;AMR_AF=0.55;AN=2;ASN_AF=0.47;AVGPOST=0.9960;ERATE=0.0032;EUR_AF=0.72;LDAF=0.6020;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 88446811 rs113445294 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.03;LDAF=0.0503;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88452373 rs11202128 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88635779 rs11528010 C A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.59;AMR_AF=0.32;AN=2;ASN_AF=0.68;AVGPOST=0.9865;ERATE=0.0488;EUR_AF=0.25;LDAF=0.4520;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88635888 rs73351703 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0119;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88635891 rs202004922 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +10 88659788 rs11818239 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.15;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0347;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88672153 rs12267107 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.15;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0348;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88681458 rs55763614 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88683122 rs7074064 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.74;AMR_AF=0.34;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.5087;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88702350 rs4934281 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.86;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9526;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 88704129 rs61736566 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0123;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 88717140 rs4244973 T A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9799;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 88717154 rs3750823 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.19;AMR_AF=0.37;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4553;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 88718436 rs1800373 A C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.48;AMR_AF=0.44;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5543;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 88730312 rs4869 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.33;AMR_AF=0.42;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.5622;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 88730374 rs7960 C T 100 PASS AA=c;AC=1;AF=0.43;AFR_AF=0.19;AMR_AF=0.28;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4357;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 88939962 rs7081609 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.96;AMR_AF=0.80;AN=2;ASN_AF=0.32;AVGPOST=0.9728;ERATE=0.0156;EUR_AF=0.79;LDAF=0.7017;RSQ=0.9650;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +10 88940096 rs10887700 A T 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.63;AMR_AF=0.46;AN=2;ASN_AF=0.17;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4622;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.66,-4.40 +10 89118125 rs77153116 C T 100 PASS AA=c;AC=1;AF=0.23;AFR_AF=0.54;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9840;ERATE=0.0121;EUR_AF=0.21;LDAF=0.2316;RSQ=0.9691;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.100:-5.00,-0.02,-1.45 +10 89503310 rs34097979 C T 100 PASS AA=C;AC=1;AF=0.0037;AFR_AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0020;LDAF=0.0035;RSQ=0.9445;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 90342837 rs2296545 C G 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.56;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4702;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 90356598 rs1409136 A G 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.97;AMR_AF=0.84;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.8757;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 90427173 rs12414074 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0388;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 90438207 rs1228187 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2309;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 90484420 . C A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.96;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8495;RSQ=0.9984;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 90492356 rs11202833 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.22;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0934;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 90530660 rs10788611 C A 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.41;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4310;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 90585819 rs7893917 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3538;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 90673047 rs34270879 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0183;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 90681048 rs34083181 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.03;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0240;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 90767640 rs2296601 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.17;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.2271;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 90771829 rs2234978 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.64;AMR_AF=0.76;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.7637;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 90975649 rs3802656 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.53;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2413;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 90983629 rs1556478 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.29;AMR_AF=0.44;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4616;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 91007360 rs1051338 T G 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2742;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 91066460 rs954439 T A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.89;AMR_AF=0.50;AN=2;ASN_AF=0.84;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6805;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91066769 rs1727 C A 100 PASS AA=A;AC=1;AF=0.87;AFR_AF=0.98;AMR_AF=0.71;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0009;EUR_AF=0.77;LDAF=0.8653;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91099630 rs3780878 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.19;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2335;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91143529 rs304494 T A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.93;AMR_AF=0.50;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6992;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91162497 rs303211 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9676;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 91359116 rs11592870 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91371445 rs7896079 C A 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.29;AMR_AF=0.55;AN=2;ASN_AF=0.50;AVGPOST=0.9957;ERATE=0.0026;EUR_AF=0.59;LDAF=0.4907;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +10 91371844 rs3802655 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.30;AMR_AF=0.57;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5174;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 91404448 rs11185826 C G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.45;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9803;ERATE=0.0022;EUR_AF=0.26;LDAF=0.3141;RSQ=0.9660;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.85 +10 91404832 rs12769113 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.43;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9762;ERATE=0.0034;EUR_AF=0.26;LDAF=0.3048;RSQ=0.9570;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.07,-0.83,-5.00 +10 91468925 rs1129777 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.21;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2304;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 91470834 rs1048057 A C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.50;AMR_AF=0.34;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3972;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91473887 rs11185853 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.44;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2975;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91483908 rs7079174 G C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.76;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8016;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 91484780 rs8181361 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.44;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2971;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91487649 rs12572012 A T 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.21;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2303;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 91488979 rs3758388 A T 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.21;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2303;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 91497631 rs1062465 T A 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.43;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2920;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91498127 rs1886996 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.79;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.74;LDAF=0.8085;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 91498254 rs1886997 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.44;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2976;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91498318 rs1886998 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.44;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2975;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91503660 rs1126480 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.43;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2920;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 91522605 rs3740038 G C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.76;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8021;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 91532432 rs3758389 A T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.50;AMR_AF=0.34;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3972;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 92678744 rs11595794 A T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.56;AMR_AF=0.56;AN=2;ASN_AF=0.53;AVGPOST=0.8278;ERATE=0.0765;EUR_AF=0.50;LDAF=0.5207;RSQ=0.7333;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.800:-0.18,-0.47,-2.41 +10 92678748 rs10881854 A T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.8240;ERATE=0.0745;EUR_AF=0.46;LDAF=0.4826;RSQ=0.7182;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.27,-0.01,-1.56 +10 92678758 rs201949081 T A 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9365;ERATE=0.0475;EUR_AF=0.29;LDAF=0.2702;RSQ=0.8493;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-3.66,-0.00,-5.00 +10 92678765 rs56177217 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.21;AMR_AF=0.54;AN=2;ASN_AF=0.41;AVGPOST=0.9706;ERATE=0.0419;EUR_AF=0.54;LDAF=0.4383;RSQ=0.9657;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 93000211 rs10881907 G A 100 PASS AA=g;AC=1;AF=0.52;AFR_AF=0.82;AMR_AF=0.45;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.38;LDAF=0.5156;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 93572984 rs11186694 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.15;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2016;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 93588201 rs1572933 G C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.87;AMR_AF=0.72;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7554;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 93588208 rs1572934 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.87;AMR_AF=0.72;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7554;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 93600480 rs17107140 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1152;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 93617306 rs1340420 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.87;AMR_AF=0.72;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7555;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 93668051 rs80269321 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0238;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 93668110 rs1107947 T A 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1527;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 93702328 rs17107230 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0013;LDAF=0.0128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 93749380 rs41287646 T G 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0420;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 93776048 rs7074133 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 93841227 rs2676811 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 93851714 rs1229578 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.81;LDAF=0.7886;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 93999850 rs3824734 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.94;AMR_AF=0.73;AN=2;ASN_AF=0.53;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.60;LDAF=0.6788;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.09,-0.04 +10 94234755 rs12245118 T A 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.27;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0640;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 94452430 rs2275729 T G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0914;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 94594565 rs2490741 G A 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.69;LDAF=0.5960;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 94695617 rs1326331 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.82;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.8551;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 94714427 rs11187225 C G 100 PASS AA=C;AC=2;AF=0.08;AFR_AF=0.08;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0800;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 94816817 rs11187263 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.16;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0759;RSQ=0.9994;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 94822756 rs58993699 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.11;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0368;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 94824166 rs11187265 G A 100 PASS AA=g;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0773;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 94833890 rs35630863 G C 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0457;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.93,-0.05 +10 95072906 rs787666 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.82;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8423;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 95095667 rs7097740 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.14;AMR_AF=0.33;AN=2;ASN_AF=0.88;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3920;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 95097537 rs1614065 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.79;AMR_AF=0.67;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8031;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 95099965 rs111875089 A T 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0100;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 95111123 rs56163868 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 95111163 rs55993578 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 95157058 rs141910418 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0085;RSQ=0.9628;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95162113 rs2272177 G C 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.25;AMR_AF=0.19;AN=2;ASN_AF=0.68;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.14;LDAF=0.3129;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 95168634 rs2296142 A G 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.2198;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 95216623 rs701882 A G 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.44;AMR_AF=0.66;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5857;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 95241999 rs947597 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9565;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 95259979 rs3740370 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.33;AMR_AF=0.18;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2468;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95262981 rs7080916 A G 100 PASS AA=G;AC=1;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9892;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95276673 rs4919224 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.65;AMR_AF=0.76;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6846;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95279506 rs2293277 A T 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.24;AMR_AF=0.71;AN=2;ASN_AF=0.56;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5774;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95346938 rs11187539 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.68;AMR_AF=0.33;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3675;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95360650 rs56401591 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=0.9954;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1379;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.48 +10 95381773 rs701865 T A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.45;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4280;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95389041 rs714550 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4094;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95389083 rs714549 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4108;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95395247 rs616522 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7052;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95405814 rs1409332 C A 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.34;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9971;ERATE=0.0071;EUR_AF=0.53;LDAF=0.4402;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 95425201 rs112520932 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 95454681 rs2275438 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.10;AMR_AF=0.45;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4008;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95458141 rs11187597 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.10;AMR_AF=0.45;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4008;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95459817 rs726817 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.47;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6650;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 95549970 rs12262635 A T 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.18;AMR_AF=0.02;AN=2;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0444;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 95549971 rs12248097 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.18;AMR_AF=0.02;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0444;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 95552653 rs1111820 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 95552925 rs1108877 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.60;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2180;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 96044734 rs3736901 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.04;AMR_AF=0.46;AN=2;ASN_AF=0.18;AVGPOST=0.9934;ERATE=0.0006;EUR_AF=0.40;LDAF=0.2728;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 96100094 rs140939496 C A 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 96104665 rs3758526 T G 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.18;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1832;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 96114835 rs12572897 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.18;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1827;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 96271298 rs2860761 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9925;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 96305729 rs10882474 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.51;AMR_AF=0.36;AN=2;ASN_AF=0.78;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.43;LDAF=0.5278;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.78 +10 96313960 rs11188019 A C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.43;AMR_AF=0.36;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.43;LDAF=0.4972;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 96322404 rs10882477 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.53;AMR_AF=0.36;AN=2;ASN_AF=0.78;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5310;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 96356571 rs7906968 A T 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.31;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.4278;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 96495232 rs2860840 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.04;AMR_AF=0.47;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2596;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 96540422 rs200936950 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 96796861 rs1058932 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.33;AMR_AF=0.18;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.2783;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 96802598 rs2275620 A T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5955;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 97074887 rs35348091 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0416;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 97106165 rs726176 T C 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.20;AMR_AF=0.41;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.33;LDAF=0.3999;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 97127462 rs6583998 C A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.86;AMR_AF=0.83;AN=2;ASN_AF=0.77;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7864;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 97141523 rs2274490 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.40;AMR_AF=0.70;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.5850;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97165935 rs144504728 G T 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97174225 rs12773574 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0334;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 97192324 rs943542 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9795;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 97366746 rs7099284 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.56;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.3277;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97369939 rs10882640 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.15;AMR_AF=0.53;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3021;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97370989 rs2296691 T A 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2125;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97373966 rs2296692 A C 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.56;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.3277;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97397227 rs2275273 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.49;AMR_AF=0.70;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.70;LDAF=0.6636;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97440394 rs12784530 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.1823;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 97442995 rs17461546 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.09;AMR_AF=0.41;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2000;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97599537 rs61731067 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0530;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 97602091 rs3181131 T C 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.56;AMR_AF=0.64;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4809;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 97607165 rs3181122 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.38;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1801;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97772253 rs3748224 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.68;AMR_AF=0.59;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.6632;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97772496 rs10748652 T A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.69;AMR_AF=0.59;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.6645;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97791761 rs1336459 A T 100 PASS AA=A;AC=1;AF=0.03;AMR_AF=0.14;AN=2;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0344;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97816420 rs7099399 G A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.56;AMR_AF=0.51;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.45;LDAF=0.5731;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 97817688 rs193097883 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 97987144 rs2305846 C G 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.28;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.46;LDAF=0.3770;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 97990583 rs727852 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.16;AMR_AF=0.66;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.71;LDAF=0.5128;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 98078127 rs7081385 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98078239 rs6584066 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98082517 rs7097016 T G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9456;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98144312 rs7085022 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9808;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98287094 rs10786298 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98287150 rs3789958 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.30;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2162;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 98287261 rs3789957 G C 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.35;AMR_AF=0.58;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 98287792 rs12779720 G T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.30;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2152;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 98319367 rs3818389 A T 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.35;AMR_AF=0.57;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6291;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 98319503 rs3818390 A T 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.37;AMR_AF=0.50;AN=2;ASN_AF=0.74;AVGPOST=0.9691;ERATE=0.0989;EUR_AF=0.54;LDAF=0.5484;RSQ=0.9550;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.52,-0.00,-5.00 +10 98321928 rs7094142 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98369536 rs3748236 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.41;AMR_AF=0.31;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2475;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 98380137 rs12784975 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=0.9941;ERATE=0.0154;EUR_AF=0.24;LDAF=0.1907;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 98380277 rs3748234 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.32;AMR_AF=0.54;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5983;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 98380363 rs7910630 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9334;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.33,-0.00 +10 98383329 rs4917745 G T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.72;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9081;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98386433 rs1469847 C A 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.69;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9004;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.57,-0.01 +10 98386558 rs4344416 G A 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.73;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9095;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98416533 rs3748231 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.19;AMR_AF=0.26;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3025;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 98469693 rs17112076 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1598;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 98808866 rs2805588 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9648;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 98819317 rs2817676 A G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.29;AMR_AF=0.67;AN=2;ASN_AF=0.84;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6291;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 98995076 rs946981 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2198;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99006083 rs13439 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.32;AMR_AF=0.27;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2400;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99019144 rs3740522 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.18;AMR_AF=0.61;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5517;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99019177 rs2253301 A G 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.75;AMR_AF=0.94;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8789;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 99024572 rs793524 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.44;AMR_AF=0.28;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2664;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99025611 rs10882884 T A 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.18;AMR_AF=0.61;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5516;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99125949 rs2275580 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.12;AMR_AF=0.57;AN=2;ASN_AF=0.43;AVGPOST=0.9990;ERATE=0.0018;EUR_AF=0.60;LDAF=0.4449;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 99160965 rs2275091 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9341;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 99205686 rs2297666 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.04;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2916;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99219885 rs2152092 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.41;AMR_AF=0.52;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5110;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99220707 rs3740526 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.20;AMR_AF=0.43;AN=2;ASN_AF=0.38;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3753;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99225738 rs2236575 T A 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.37;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4181;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99226370 rs29001315 A C 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1787;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99229489 rs11592973 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.21;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1509;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99240651 rs29001278 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0096;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99240758 rs2275586 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9518;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 99337572 rs7094973 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.17;AMR_AF=0.64;AN=2;ASN_AF=0.41;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.70;LDAF=0.4941;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +10 99338262 rs36020819 C T 100 PASS AA=C;AC=1;AF=0.0032;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0012;EUR_AF=0.01;LDAF=0.0034;RSQ=0.9215;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.950:-4.40,-0.00,-5.00 +10 99350017 rs7093840 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.34;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2540;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99350128 rs7093643 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.39;AMR_AF=0.26;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2655;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99358511 rs11817730 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.19;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1645;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99359412 rs7078003 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0937;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99371344 rs12261752 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.35;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=0.9969;ERATE=0.0008;EUR_AF=0.26;LDAF=0.2998;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99439556 rs11556392 A C 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=0.9981;ERATE=0.0006;EUR_AF=0.06;LDAF=0.0450;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99498234 rs3818876 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4653;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99504630 rs10882993 G T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.79;AMR_AF=0.67;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0044;EUR_AF=0.79;LDAF=0.7120;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +10 99510068 rs3750614 G T 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.39;AMR_AF=0.60;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5868;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 99517355 rs3750612 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.51;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6539;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 99519097 rs1981237 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.73;AMR_AF=0.68;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7039;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 99529459 rs144832598 G A 100 PASS AA=G;AC=1;AF=0.0018;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0018;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99682981 rs894375 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.72;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8249;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +10 99969475 rs34494334 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1613;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 99969568 rs11189513 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2783;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 99991408 rs1952061 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9931;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 99995773 rs61875307 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1591;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 100013438 rs17524355 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1541;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 100013563 rs7086391 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1569;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 100017453 rs1983864 T G 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.08;AMR_AF=0.44;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3643;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100018844 rs7077073 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.28;AMR_AF=0.53;AN=2;ASN_AF=0.74;AVGPOST=0.9970;ERATE=0.0010;EUR_AF=0.46;LDAF=0.5041;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-1.43,-0.02,-5.00 +10 100144782 rs2296441 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0047;EUR_AF=0.26;LDAF=0.3612;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100147060 rs4345897 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.63;AMR_AF=0.45;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4814;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100147097 rs4400721 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.41;AMR_AF=0.41;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3709;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100148176 rs2147896 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.87;AMR_AF=0.51;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5559;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100148308 rs2147895 T G 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.60;AMR_AF=0.45;AN=2;ASN_AF=0.58;AVGPOST=0.9985;ERATE=0.0036;EUR_AF=0.34;LDAF=0.4779;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +10 100152373 rs6584192 T G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.58;AMR_AF=0.45;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4722;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100167322 rs11189595 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.26;AN=2;ASN_AF=0.37;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2367;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100167396 rs12763326 G A 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.51;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3732;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100167436 rs45523432 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.51;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3739;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100167451 rs12763044 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.51;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3721;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100170762 rs3814140 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.57;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3860;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.10 +10 100174721 rs2147900 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.57;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3853;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100182285 rs2296435 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2423;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100184062 rs2296433 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9941;ERATE=0.0008;EUR_AF=0.16;LDAF=0.1980;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100184063 rs2296432 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9941;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1985;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100190920 rs1801287 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.29;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2758;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 100219314 rs10883099 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.63;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5420;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 100219374 rs10883100 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.63;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5424;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 100219519 rs11189618 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.63;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5429;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 100401745 rs693656 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3762;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101089810 rs74419794 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9656;ERATE=0.0018;EUR_AF=0.0040;LDAF=0.0261;RSQ=0.4718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.750:-2.29,-0.00,-2.27 +10 101090428 rs2862600 T G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.95;AMR_AF=0.76;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8496;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101293035 rs41290504 C A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9809;ERATE=0.0139;EUR_AF=0.50;LDAF=0.5171;RSQ=0.9688;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101373729 rs17494319 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.05;AVGPOST=0.9882;ERATE=0.0079;EUR_AF=0.22;LDAF=0.1551;RSQ=0.9691;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 101439252 rs3740079 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.85;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8355;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +10 101445591 rs3740078 A C 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2747;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101451259 rs11190245 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2610;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101473218 rs2231687 A G 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.76;AMR_AF=0.84;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8140;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101474499 rs11190255 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2644;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101542578 rs717620 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1765;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101544447 rs927344 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9959;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101553259 rs2804400 C T 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.27;AMR_AF=0.45;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3515;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101604207 rs3740066 C T 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.21;AMR_AF=0.38;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3048;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101639796 rs2255901 G A 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.50;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4543;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101639877 rs11190305 A C 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.11;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2884;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101645498 rs2490763 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.55;AMR_AF=0.53;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4674;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.33,-0.00 +10 101654696 rs3758394 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.46;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0035;EUR_AF=0.54;LDAF=0.4542;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101655982 rs3740058 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2779;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 101657880 rs7919323 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2779;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101715899 rs2862923 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.64;AMR_AF=0.45;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4251;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 101716112 rs35924554 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.03;LDAF=0.0530;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101802262 rs61733667 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0298;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101825160 rs3829161 C G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.47;AMR_AF=0.46;AN=2;ASN_AF=0.20;AVGPOST=0.9982;ERATE=0.0027;EUR_AF=0.46;LDAF=0.3907;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 101829514 rs61751507 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0320;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101841153 rs10883439 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.96;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9116;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 101912064 rs2862954 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.03;AMR_AF=0.37;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.2473;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101953705 rs11597086 A C 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2230;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101964312 rs17880383 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.08;LDAF=0.0392;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101977883 rs2230804 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.76;AMR_AF=0.49;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5617;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 101980459 rs986266 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9798;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 102016268 rs2270961 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.74;AMR_AF=0.48;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5557;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102056970 rs2278841 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.40;LDAF=0.4274;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 102056972 rs2278840 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.35;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9884;ERATE=0.0115;EUR_AF=0.36;LDAF=0.3936;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 102057005 rs2278839 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.44;AN=2;ASN_AF=0.52;AVGPOST=0.9911;ERATE=0.0080;EUR_AF=0.40;LDAF=0.4581;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 102107251 rs1054411 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.12;AMR_AF=0.47;AN=2;ASN_AF=0.36;AVGPOST=0.9971;ERATE=0.0009;EUR_AF=0.41;LDAF=0.3417;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 102116311 rs2234970 A C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.37;AMR_AF=0.51;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4232;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 102258439 rs9420792 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1902;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102265183 rs2295772 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1810;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102265815 rs2295773 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1810;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102265847 rs2295774 A C 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1550;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102269085 rs3793706 C A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1901;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102269206 rs3763695 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1810;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102296461 rs10883509 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1778;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102506070 rs4472867 G C 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8295;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 102506103 rs4405241 C A 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.21;AMR_AF=0.44;AN=2;ASN_AF=0.96;AVGPOST=0.9967;ERATE=0.0007;EUR_AF=0.41;LDAF=0.5107;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 102684380 rs10883563 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.12;AMR_AF=0.46;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3327;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102689217 rs2273654 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2591;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102707526 rs12780429 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0150;RSQ=0.9569;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102738936 rs188155769 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0059;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 102746829 rs181211282 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102762256 rs752974 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.43;AN=2;ASN_AF=0.12;AVGPOST=0.9942;ERATE=0.0004;EUR_AF=0.49;LDAF=0.2884;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102783678 rs6584410 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.81;AMR_AF=0.61;AN=2;ASN_AF=0.43;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5902;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 102824349 rs807037 G C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.44;AVGPOST=0.9990;ERATE=0.0008;EUR_AF=0.65;LDAF=0.5830;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 103281634 rs6584429 C G 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.57;AMR_AF=0.23;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.21;LDAF=0.4009;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103281676 rs6584430 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.58;AMR_AF=0.29;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.4338;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.25,-0.00,-5.00 +10 103368654 rs7006 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.30;LDAF=0.2518;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103558701 rs17697840 G A 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103563470 rs17697930 A G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0539;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103572913 rs41307050 T A 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0421;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103577726 rs41291488 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.06;AN=2;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0427;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103751836 rs17778015 C T 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.06;AN=2;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0539;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103799758 rs11191190 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.31;AMR_AF=0.31;AN=2;ASN_AF=0.55;AVGPOST=0.9963;ERATE=0.0027;EUR_AF=0.25;LDAF=0.3526;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103900729 rs61731871 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0814;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103907055 rs34169738 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103908080 rs3740405 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.40;AN=2;ASN_AF=0.14;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2641;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 103916985 rs199809715 A T 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 103920172 rs17114409 T G 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.07;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0687;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103920475 rs1049455 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.49;AMR_AF=0.12;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1622;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103922063 rs1049466 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.12;AMR_AF=0.06;AN=2;AVGPOST=0.9995;ERATE=0.0027;EUR_AF=0.08;LDAF=0.0636;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 103991381 rs2281983 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.77;AMR_AF=0.61;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6870;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104125108 rs151041619 A C 100 PASS AA=A;AC=1;AF=0.0032;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0032;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +10 104128954 rs7902882 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 104136469 rs2180707 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 104136571 rs150136542 T G 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0119;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104138996 rs61873660 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.07;AN=2;AVGPOST=0.9990;ERATE=0.0014;EUR_AF=0.07;LDAF=0.0666;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104157727 rs4919632 C T 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.83;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9491;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 104159196 rs4919633 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9893;ERATE=0.0013;EUR_AF=1.00;LDAF=0.9877;RSQ=0.6456;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +10 104160434 rs4919634 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 104163569 rs11191283 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.20;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2474;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +10 104184081 rs1044476 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0951;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104184213 rs41287462 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.26;AN=2;ASN_AF=0.09;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1622;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104184953 rs11597439 C G 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.19;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2594;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 104184981 rs11593146 A G 100 PASS AA=a;AC=2;AF=0.26;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.19;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.34;LDAF=0.2596;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 104229785 rs41306870 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4205;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104231054 rs11191295 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4204;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104232716 rs3740415 G A 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4200;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104240974 rs2296578 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.40;AMR_AF=0.34;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3253;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104242886 rs2296581 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.21;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2820;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104243883 rs7079810 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.21;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2819;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104244139 rs2296582 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.21;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2820;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104264107 rs2274351 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4050;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104268877 rs2281879 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.40;AMR_AF=0.34;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3254;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104387019 rs12414407 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.76;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7061;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104389932 rs4917980 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9951;RSQ=0.8278;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 104492707 rs2778037 G C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7427;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 104572963 rs284860 T C 100 PASS AA=c;AC=1;AF=0.55;AFR_AF=0.56;AMR_AF=0.61;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5480;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104573017 rs284859 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1556;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 104592249 rs4919686 A C 100 PASS AA=a;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1755;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104596924 rs6163 C A 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.33;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4214;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104596981 rs6162 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.33;AMR_AF=0.40;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4296;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104597152 rs743572 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.33;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4210;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 104650251 rs7085854 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.15;AN=2;ASN_AF=0.17;AVGPOST=0.9986;ERATE=0.0007;EUR_AF=0.22;LDAF=0.1917;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105128134 rs10883859 T G 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=0.9048;ERATE=0.0130;EUR_AF=0.35;LDAF=0.3886;RSQ=0.8464;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.66,-0.11 +10 105215016 rs2986016 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.97;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.75;LDAF=0.8543;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.92 +10 105218252 rs2986017 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.97;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=0.9956;ERATE=0.0004;EUR_AF=0.74;LDAF=0.8478;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105218254 rs4918016 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.40;AN=2;ASN_AF=0.44;AVGPOST=0.9875;ERATE=0.0040;EUR_AF=0.29;LDAF=0.3307;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105218359 rs2986018 T C 100 PASS AA=C;AC=1;AF=0.86;AFR_AF=0.97;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8605;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105344756 rs2236209 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.39;AMR_AF=0.52;AN=2;ASN_AF=0.71;AVGPOST=0.9937;ERATE=0.0012;EUR_AF=0.54;LDAF=0.5472;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-0.40,-0.22,-2.53 +10 105361816 rs4918031 T G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8702;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105362209 rs4917396 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8894;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 105484018 rs45564336 T C 100 PASS AA=T;AC=2;AF=0.11;AFR_AF=0.20;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1097;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 105495612 rs6584568 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.65;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4082;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 105615074 rs10883928 C T 100 PASS AA=c;AC=1;AF=0.37;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.65;AVGPOST=0.9964;ERATE=0.0005;EUR_AF=0.31;LDAF=0.3702;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +10 105657316 rs10786775 G C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.65;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8734;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 105658588 rs2902639 G C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.32;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105659826 rs2487999 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.65;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 105759018 rs55977639 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105762591 rs805657 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.37;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1997;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105781532 rs10883961 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.21;AMR_AF=0.56;AN=2;ASN_AF=0.73;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5215;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105792077 rs805688 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.45;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2427;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105792539 rs41302703 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0473;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105793173 rs1747675 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9863;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +10 105796399 rs2274098 G C 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.42;AMR_AF=0.78;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7285;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105796819 rs2476958 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 105797378 rs2282437 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.40;AMR_AF=0.78;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7221;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105798872 rs2274100 T C 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.42;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7174;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105799216 rs2296219 G T 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.40;AMR_AF=0.78;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7225;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105801253 rs4918079 G A 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.40;AMR_AF=0.78;AN=2;ASN_AF=0.78;AVGPOST=0.9892;ERATE=0.0066;EUR_AF=0.80;LDAF=0.7011;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105805497 rs813944 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.19;AMR_AF=0.47;AN=2;ASN_AF=0.67;AVGPOST=0.9977;ERATE=0.0049;EUR_AF=0.52;LDAF=0.4776;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105810400 rs805722 T C 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.47;AMR_AF=0.81;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7244;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 105811218 rs12260615 T A 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.11;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105816685 rs805696 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=0.88;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9155;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +10 105816916 rs805698 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.49;AMR_AF=0.94;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8409;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 105819956 rs805701 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.25;AMR_AF=0.69;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5869;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105821136 rs805704 A T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.71;AMR_AF=0.96;AN=2;ASN_AF=0.88;AVGPOST=0.9911;ERATE=0.0048;EUR_AF=0.99;LDAF=0.8944;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +10 105824333 rs805708 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.27;AMR_AF=0.71;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6010;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105840422 rs17116471 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0293;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 105882765 rs10786783 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.36;AMR_AF=0.16;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2176;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105942304 rs569856 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.70;AMR_AF=0.38;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4625;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 105967413 rs17824653 A C 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1426;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 106037894 rs157077 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.82;AMR_AF=0.39;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.47;LDAF=0.5218;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 106159305 rs10509772 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.80;AMR_AF=0.48;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5621;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 106602537 rs41317264 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0978;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 106675585 rs6584635 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.62;AMR_AF=0.26;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3012;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 106907440 rs791125 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.52;AMR_AF=0.64;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.4950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 106907586 rs791126 C G 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.52;AMR_AF=0.64;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.4950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 108338917 rs11192966 T C 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0855;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 108388923 rs1885351 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1321;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 108439103 rs821929 A C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.67;AMR_AF=0.81;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7802;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 108459165 rs17121235 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 108466412 rs2756231 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9433;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 108489848 rs149193345 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0051;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 111878510 rs12268910 T G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.82;AMR_AF=0.21;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3874;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 112266822 rs1889566 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.68;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=0.9781;ERATE=0.0325;EUR_AF=0.83;LDAF=0.8148;RSQ=0.9593;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 112266823 rs1889565 C T 100 PASS AA=c;AC=2;AF=0.82;AFR_AF=0.68;AMR_AF=0.86;AN=2;ASN_AF=0.88;AVGPOST=0.9809;ERATE=0.0299;EUR_AF=0.84;LDAF=0.8184;RSQ=0.9622;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 112356331 rs7075340 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.89;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9552;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 112361870 rs2419565 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9890;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 112641053 rs7081726 A G 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.85;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 112764594 rs1980869 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.79;AMR_AF=0.89;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8350;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.43,-0.00 +10 113917085 rs2254537 T A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.78;AMR_AF=0.66;AN=2;ASN_AF=0.73;AVGPOST=0.9957;ERATE=0.0079;EUR_AF=0.67;LDAF=0.7069;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 113920465 rs2277207 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.57;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5453;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 113920652 rs3824626 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.57;AMR_AF=0.46;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5466;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 113923595 rs10736219 C G 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.57;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5452;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 113935379 rs10787428 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.57;AMR_AF=0.47;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5484;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 113940329 rs2792751 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.95;AMR_AF=0.68;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.68;LDAF=0.7564;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 114053546 rs726009 C G 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.52;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5608;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 114181683 rs2255740 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9397;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 114186624 rs2256368 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9525;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 114192285 rs2306158 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.39;LDAF=0.3519;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 114200355 rs2306159 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.34;AMR_AF=0.55;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4955;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 114710942 rs200761145 C T 100 PASS AA=C;AC=1;AF=0.0014;AFR_AF=0.0041;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0016;RSQ=0.8653;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.83 +10 115334124 rs3740530 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.27;AMR_AF=0.64;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5435;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115340492 rs2286742 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.40;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9990;ERATE=0.0052;EUR_AF=0.54;LDAF=0.5582;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115370254 rs12243176 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.34;AMR_AF=0.48;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4571;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115370274 rs10749138 T C 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.30;AMR_AF=0.48;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4493;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115375528 rs11196397 C A 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.09;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2648;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115393929 rs3189030 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.12;AMR_AF=0.31;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2994;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115401081 rs3127105 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.68;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115401264 rs3121465 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.33;AMR_AF=0.68;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0025;EUR_AF=0.61;LDAF=0.5832;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115405615 rs3127106 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.68;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5855;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115405664 rs3121478 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.68;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115410234 rs2185913 T C 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2430;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115411614 rs2154028 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8821;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115412686 rs3121488 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.81;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=0.9981;ERATE=0.0008;EUR_AF=0.88;LDAF=0.8720;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115417289 rs1891762 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8807;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115423094 rs12770981 G C 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3044;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115457387 rs191199444 T C 100 PASS AA=T;AC=1;AF=0.0046;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0045;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 115489152 rs2227310 C G 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115489167 rs2227309 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.14;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2715;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115529576 rs41292632 T A 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.15;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.15;LDAF=0.1874;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 115533975 rs3750903 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.47;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3917;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 115535599 rs3750901 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2029;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 115540311 rs11196482 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.26;AMR_AF=0.29;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3414;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 115540411 rs11196483 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3492;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 115609915 rs3750898 C G 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.35;AMR_AF=0.81;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6988;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 115804036 rs1801252 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.24;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=0.9978;ERATE=0.0007;EUR_AF=0.12;LDAF=0.1723;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 115805056 rs1801253 G C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.60;AMR_AF=0.79;AN=2;ASN_AF=0.79;AVGPOST=0.9887;ERATE=0.0014;EUR_AF=0.66;LDAF=0.7013;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +10 115962953 rs17091414 A G 100 PASS AA=a;AC=1;AF=0.18;AFR_AF=0.25;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1756;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 116032519 rs597371 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.86;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5051;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 116060387 rs2286396 T C 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.29;AMR_AF=0.81;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.83;LDAF=0.6645;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 116068176 rs581327 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.84;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9246;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 116073696 rs3813722 C T 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.10;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0012;EUR_AF=0.76;LDAF=0.6439;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 116091555 rs10787524 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.48;AMR_AF=0.81;AN=2;ASN_AF=0.94;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7721;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.40,-0.02 +10 116100320 rs4752395 T G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.35;AMR_AF=0.81;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7418;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 116203906 rs72826956 A C 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.0017;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1536;RSQ=0.9953;SNPSOURCE=EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 116307504 rs2247528 A G 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.97;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7623;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 116335246 rs985273 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.44;AMR_AF=0.34;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2848;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 116620968 rs145620128 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0334;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 117075175 rs1953758 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9785;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 117226713 rs17093114 T C 100 PASS AA=T;AC=1;AF=0.06;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0645;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 117228794 rs10885721 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.30;AMR_AF=0.49;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0019;EUR_AF=0.46;LDAF=0.3566;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 117486910 rs2286631 T G 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.17;AMR_AF=0.51;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.43;LDAF=0.4730;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 117884950 rs2245020 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.27;AMR_AF=0.62;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4912;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118231328 rs61729307 A G 100 PASS AA=A;AC=2;AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0242;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118231360 rs10736251 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0019;EUR_AF=1.00;LDAF=0.9721;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118231363 rs1897519 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118231406 rs10749217 A C 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.60;AMR_AF=0.77;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7569;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118236610 rs2116286 T A 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1641;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118313265 rs2915748 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.90;AMR_AF=0.84;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8322;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118351905 rs1867991 A C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.57;AMR_AF=0.71;AN=2;ASN_AF=0.62;AVGPOST=0.9979;ERATE=0.0019;EUR_AF=0.68;LDAF=0.6425;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118355695 rs2915765 A T 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.22;AMR_AF=0.54;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3591;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118357490 rs2915764 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.73;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=0.9850;ERATE=0.0570;EUR_AF=0.90;LDAF=0.8709;RSQ=0.9465;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118359548 rs3816355 T C 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.45;AMR_AF=0.60;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.65;LDAF=0.6747;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118363642 rs3010501 T C 100 PASS AA=-;AC=2;AF=0.72;AFR_AF=0.55;AMR_AF=0.73;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7153;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 118368606 rs1049125 T C 100 PASS AA=-;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1339;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 118671273 rs75242161 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0183;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 118957027 rs67346047 A G 100 PASS AA=a;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0766;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 118969346 rs363315 T C 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0768;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 119003564 rs363387 T G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0871;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 119014023 rs2072362 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.92;AMR_AF=0.88;AN=2;ASN_AF=0.68;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.91;LDAF=0.8468;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 119014948 rs363343 C A 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.59;AMR_AF=0.74;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6448;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 119026566 rs363227 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.67;AMR_AF=0.79;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7514;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 119029744 rs363272 G A 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.67;AMR_AF=0.79;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7523;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 119036625 rs363279 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1600;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 119042761 rs363293 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9607;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 119133968 rs3814230 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.36;AMR_AF=0.24;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2802;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 119134058 rs3814229 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.36;AMR_AF=0.24;AN=2;ASN_AF=0.42;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2812;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 119768551 rs7923321 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.72;AMR_AF=0.89;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.7925;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 120070427 rs4751651 G T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.21;AMR_AF=0.55;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.53;LDAF=0.4391;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120070709 rs3213691 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.18;AMR_AF=0.55;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4223;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120353843 rs8192524 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0266;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120353910 rs1613448 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9972;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9775;RSQ=0.9531;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +10 120354472 rs938700 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.08;AMR_AF=0.06;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0437;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120446114 rs12440 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0425;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120817450 rs10886375 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.53;AMR_AF=0.92;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8368;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 120820224 rs3740555 C A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.52;AMR_AF=0.92;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8366;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 120828969 rs7908387 A G 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.45;AMR_AF=0.91;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8181;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 120867716 rs149420713 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0059;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120883045 rs74157632 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.21;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0739;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120889022 rs3802739 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3218;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 120896027 rs11198799 G A 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.74;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9124;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 120914692 rs17668734 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2642;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 120917269 rs2420494 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 120917445 rs2275111 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.47;AMR_AF=0.49;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5320;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120917616 rs2275112 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.29;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2687;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 120919246 rs2181118 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 120920588 rs10749291 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.46;AMR_AF=0.44;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5141;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 120933324 rs3758609 G A 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.96;AMR_AF=0.92;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9534;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 120936701 rs3740562 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.55;AMR_AF=0.31;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4311;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121196335 rs2230349 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1189;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121199310 rs1109490 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.24;AMR_AF=0.42;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3299;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 121201626 rs2275044 T C 100 PASS AA=N;AC=2;AF=0.75;AFR_AF=0.52;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7513;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 121435955 rs196294 A C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.68;AMR_AF=0.74;AN=2;ASN_AF=0.48;AVGPOST=0.9936;ERATE=0.0031;EUR_AF=0.75;LDAF=0.6638;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121436362 rs196295 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6984;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121564859 rs2273748 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.56;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3170;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121565015 rs2273749 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.59;AVGPOST=0.9920;ERATE=0.0182;EUR_AF=0.27;LDAF=0.3381;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121586827 rs56055506 A G 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.16;LDAF=0.1509;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121591511 rs2273747 G A 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1540;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121602732 rs17099338 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0722;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121602949 rs3740565 G A 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0722;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121618382 rs34469768 T A 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0718;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121632120 rs11556853 A T 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.17;AVGPOST=0.9877;ERATE=0.0013;EUR_AF=0.07;LDAF=0.0822;RSQ=0.9380;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.900:-0.48,-0.48,-0.48 +10 121668656 rs3740570 T G 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0754;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121671651 rs17099368 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0754;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121679013 rs2475298 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7363;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 121680359 rs2271123 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0750;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121685559 rs12771873 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0782;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 121693246 rs34826964 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 122216790 rs10886691 A T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.57;AMR_AF=0.76;AN=2;ASN_AF=0.60;AVGPOST=0.9671;ERATE=0.0023;EUR_AF=0.72;LDAF=0.6617;RSQ=0.9437;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.11,-0.47,-0.18 +10 122618148 rs2241846 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1919;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 122624679 rs10886789 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3131;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 122626038 rs2289335 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3131;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 122645376 rs7899928 A T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3698;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 122646379 rs7079830 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3692;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 122663585 rs1652727 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.88;AMR_AF=0.67;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6590;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 122664967 rs1866516 C T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.83;AMR_AF=0.63;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6165;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 122665459 rs3740307 C G 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1581;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123243197 rs2278202 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.10;AMR_AF=0.65;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4236;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 123263478 rs3135774 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0170;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 123298158 rs1047100 T C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.79;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8236;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 123310871 rs755793 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.36;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1203;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 123549691 rs35350755 T G 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.53;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.43;LDAF=0.4862;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123596254 rs4237536 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9040;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 123673339 rs10749435 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9040;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 123681962 rs10887023 T C 100 PASS AA=T;AC=2;AF=0.28;AFR_AF=0.09;AMR_AF=0.39;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2838;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +10 123719835 rs10887033 T A 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.30;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3125;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +10 123724767 rs4752626 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9336;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 123724863 rs149089631 G A 100 PASS AA=G;AC=2;AF=0.02;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0169;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 123810060 rs11200367 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.18;AMR_AF=0.21;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.08;LDAF=0.1380;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 123810115 rs11200368 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.19;AMR_AF=0.21;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1397;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 123842467 rs78149003 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0186;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123842523 rs11200385 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2094;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123844503 rs10887063 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.29;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1915;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123845211 rs11200387 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.19;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1607;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123845322 rs7073433 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 123845897 rs1106992 G C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2103;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123846288 rs4752642 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2121;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123846485 rs4751871 A G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2121;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123846860 rs11599291 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2048;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123847355 rs10788237 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2076;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123970530 rs2295873 T C 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.67;AMR_AF=0.24;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.09;LDAF=0.3199;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 123970569 rs2295874 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1011;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 123970587 rs2295875 C T 100 PASS AA=C;AC=1;AF=0.06;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0608;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 123970722 rs2295876 T A 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.13;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.08;LDAF=0.0843;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 123976391 rs10444046 C A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.84;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8328;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124036328 rs11200524 G A 100 PASS AA=G;AC=2;AF=0.10;AFR_AF=0.0041;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0960;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124036494 rs7090214 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.86;AMR_AF=0.67;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7349;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 124066731 rs7100442 T G 100 PASS AA=T;AC=2;AF=0.14;AFR_AF=0.13;AMR_AF=0.18;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1362;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124089036 rs2421013 G A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.59;AMR_AF=0.59;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.51;LDAF=0.6340;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124089129 rs10887130 G A 100 PASS AA=G;AC=2;AF=0.10;AFR_AF=0.0041;AMR_AF=0.16;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0973;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.53,-0.15 +10 124094467 rs10887135 T C 100 PASS AA=T;AC=2;AF=0.10;AFR_AF=0.0041;AMR_AF=0.16;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0987;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124095982 rs3817280 A G 100 PASS AA=a;AC=2;AF=0.47;AFR_AF=0.42;AMR_AF=0.46;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4671;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +10 124096035 rs3817281 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.42;AMR_AF=0.45;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.32;LDAF=0.4667;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124096041 rs1129973 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.42;AMR_AF=0.46;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4676;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124096061 rs1048347 A C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.42;AMR_AF=0.46;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4676;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124096209 rs3817284 C T 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.42;AMR_AF=0.46;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4667;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124183691 rs45519541 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=0.9725;ERATE=0.0889;EUR_AF=0.30;LDAF=0.3333;RSQ=0.9375;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-3.09,-0.00,-5.00 +10 124183732 rs4405249 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9232;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +10 124189197 rs1045216 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.80;AMR_AF=0.73;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0018;EUR_AF=0.60;LDAF=0.7189;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124271589 rs2672586 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124329672 rs3740220 T C 100 PASS AA=N;AC=2;AF=0.55;AFR_AF=0.42;AMR_AF=0.65;AN=2;ASN_AF=0.63;AVGPOST=0.9830;ERATE=0.0015;EUR_AF=0.52;LDAF=0.5508;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124329673 rs3740221 C T 100 PASS AA=t;AC=2;AF=0.55;AFR_AF=0.42;AMR_AF=0.66;AN=2;ASN_AF=0.64;AVGPOST=0.9835;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5531;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124329710 rs11523871 C A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6992;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124329746 rs3740222 A T 100 PASS AA=a;AC=2;AF=0.70;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6989;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124330427 rs3013236 C T 100 PASS AA=c;AC=2;AF=0.70;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6979;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124331867 rs7084792 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124333308 rs2277235 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.43;AMR_AF=0.74;AN=2;ASN_AF=0.73;AVGPOST=0.9813;ERATE=0.0091;EUR_AF=0.64;LDAF=0.6320;RSQ=0.9697;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124335866 rs1985025 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.47;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6681;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 124339332 rs3013245 T C 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.85;AMR_AF=0.94;AN=2;ASN_AF=0.94;AVGPOST=0.9370;ERATE=0.0185;EUR_AF=0.94;LDAF=0.9064;RSQ=0.7228;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.10,-0.04 +10 124339378 rs1969620 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.08;AN=2;ASN_AF=0.22;AVGPOST=0.9964;ERATE=0.0007;EUR_AF=0.0026;LDAF=0.1011;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-3.40,-0.49,-0.17 +10 124339439 rs1969621 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.12;AMR_AF=0.07;AN=2;ASN_AF=0.21;AVGPOST=0.9904;ERATE=0.0028;EUR_AF=0.0026;LDAF=0.0923;RSQ=0.9617;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.66,-0.11 +10 124339449 rs4339974 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.22;AMR_AF=0.15;AN=2;ASN_AF=0.26;AVGPOST=0.9939;ERATE=0.0005;EUR_AF=0.06;LDAF=0.1622;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-2.85,-0.45,-0.19 +10 124351954 rs4752722 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.48;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9600;ERATE=0.0088;EUR_AF=0.11;LDAF=0.3004;RSQ=0.9344;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124351992 rs118033581 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.12;AVGPOST=0.9914;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0464;RSQ=0.9318;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124399985 rs2261660 G T 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.82;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.36;LDAF=0.5567;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124402677 rs1052715 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.86;AMR_AF=0.52;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5922;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124457452 rs2947594 C T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.87;AMR_AF=0.78;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.7916;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124457969 rs74509433 C G 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0388;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124610027 rs1891110 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.51;AMR_AF=0.45;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5261;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124740079 rs79913180 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0335;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.21,-0.41 +10 124742586 rs3736585 G A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.5937;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124742792 rs3736583 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.5937;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124742895 rs3736582 G C 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.5937;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 124917238 rs2304550 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.29;AMR_AF=0.14;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.2340;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 125426412 rs12263344 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.59;AMR_AF=0.58;AN=2;ASN_AF=0.39;AVGPOST=0.9914;ERATE=0.0009;EUR_AF=0.63;LDAF=0.5521;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 125426565 rs4980313 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9992;RSQ=0.7607;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.86,-0.01 +10 125506302 rs7088479 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9903;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 125521533 rs10794566 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.47;AMR_AF=0.73;AN=2;ASN_AF=0.55;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6394;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 125521590 rs10794567 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.59;AMR_AF=0.74;AN=2;ASN_AF=0.55;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6705;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 125521721 rs10751743 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.90;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8241;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 125526689 rs1896392 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.52;AMR_AF=0.75;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6717;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 125528007 rs1219726 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.38;LDAF=0.3999;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 125528048 rs1219725 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.15;AMR_AF=0.44;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.38;LDAF=0.3972;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 125780958 rs9422312 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.10;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.28;LDAF=0.2852;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 125801809 rs28716482 C A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.53;AMR_AF=0.32;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3284;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 126089434 rs11461 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.17;AMR_AF=0.53;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4113;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 126093991 rs9422807 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.79;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8519;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 126172863 rs6597801 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.99;AMR_AF=0.89;AN=2;ASN_AF=0.94;AVGPOST=0.9982;ERATE=0.0048;EUR_AF=0.85;LDAF=0.9136;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 126185618 rs3824810 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.81;AMR_AF=0.70;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6988;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 126186708 rs185278267 G A 100 PASS AA=G;AC=1;AF=0.0023;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0024;RSQ=0.9507;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 126517989 rs2303611 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.21;AMR_AF=0.53;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4815;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 126681219 rs62943061 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.20;AMR_AF=0.48;AN=2;ASN_AF=0.67;AVGPOST=0.9882;ERATE=0.0323;EUR_AF=0.67;LDAF=0.5335;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 126714714 rs2946994 G C 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.39;AMR_AF=0.34;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4721;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 126714966 rs3012075 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.33;AMR_AF=0.34;AN=2;ASN_AF=0.62;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4604;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 126715075 rs3781413 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=0.9991;ERATE=0.0012;EUR_AF=0.13;LDAF=0.1187;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.05,-0.00,-5.00 +10 126715154 rs3781412 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.17;AMR_AF=0.54;AN=2;ASN_AF=0.32;AVGPOST=0.9843;ERATE=0.0033;EUR_AF=0.41;LDAF=0.3492;RSQ=0.9763;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.05,-0.94,-5.00 +10 126715436 rs3781411 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1188;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 126715744 rs3781407 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.05;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0359;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 126716346 rs2938006 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.35;AMR_AF=0.34;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4658;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127426588 rs3740180 C A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.67;AMR_AF=0.57;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7418;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127426835 rs3943225 G T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.82;AMR_AF=0.86;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8698;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 127436411 rs2296832 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.53;AMR_AF=0.55;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7057;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127459189 rs17153528 T G 100 PASS AA=T;AC=1;AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0261;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 127460952 rs10901424 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.18;AMR_AF=0.26;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2475;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127462525 rs10901425 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.69;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=0.9548;ERATE=0.0083;EUR_AF=0.81;LDAF=0.7288;RSQ=0.9182;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127483573 rs3740179 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.41;AMR_AF=0.36;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3885;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127484653 rs2281954 G A 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.41;AMR_AF=0.36;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0033;EUR_AF=0.44;LDAF=0.3829;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127530325 rs3208565 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.57;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4305;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127548587 rs1539315 C G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.84;AMR_AF=0.94;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8951;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 127685091 rs3736477 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.47;AMR_AF=0.54;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0019;EUR_AF=0.66;LDAF=0.6326;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127686013 rs12411612 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.12;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0198;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 127693432 rs2138283 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 127697165 rs2292690 T G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.52;AMR_AF=0.54;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6463;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 127708428 rs2138280 A T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5613;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.44,-0.20 +10 127753361 rs2279090 T C 100 PASS AA=T;AC=2;AF=0.15;AFR_AF=0.17;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1476;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +10 127753478 rs1278279 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.40;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.23;LDAF=0.2739;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 127843740 rs1466359 G T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.48;AMR_AF=0.48;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5301;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 127843756 rs1466360 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5347;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 127843921 rs1466361 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.48;AMR_AF=0.48;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5301;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 128019025 rs3740199 C G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.59;AMR_AF=0.57;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.56;LDAF=0.5471;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 128150096 rs12412320 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.09;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1264;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 128192985 rs11245007 C T 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.67;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=0.9982;ERATE=0.0014;EUR_AF=0.30;LDAF=0.4449;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 128202435 rs1436803 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.90;AMR_AF=0.87;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8606;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 129690826 rs35070529 A T 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0503;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129845625 rs61758315 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0447;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.74 +10 129845903 rs7912703 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.22;AMR_AF=0.50;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0012;EUR_AF=0.32;LDAF=0.3406;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 129846010 rs7911904 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.81;AMR_AF=0.80;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7993;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 129854369 rs4424589 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8428;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 129859992 rs4462251 T C 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.39;AMR_AF=0.67;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5315;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 129899578 rs8473 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.39;AMR_AF=0.58;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4749;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 129899778 rs11106 G C 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.39;AMR_AF=0.52;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4306;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 129900858 rs3191122 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1979;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 129901066 rs114687140 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0403;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129901393 rs11016071 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2230;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129901501 rs2071496 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1984;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 129901722 rs10082432 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2235;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129901726 rs10082533 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2235;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129901747 rs10764749 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1985;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 129901825 rs10082391 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2230;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129901946 rs1050767 T G 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.26;AMR_AF=0.18;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2130;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129902158 rs12777740 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.26;AMR_AF=0.18;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2130;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129902281 rs1063535 G A 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.40;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4749;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 129902368 rs79661992 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0484;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129903016 rs7071768 T C 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.40;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4767;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 129903465 rs2857028 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2088;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 129904477 rs11591817 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.26;AMR_AF=0.18;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2130;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129905896 rs3740423 T A 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.29;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1562;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 129906468 rs4750936 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2230;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129906980 rs2152143 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2079;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 129907544 rs2240 G C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2231;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129911856 rs11016076 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2244;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 129917560 rs2071498 T C 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.62;AMR_AF=0.69;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6467;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 131506192 rs1803965 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.11;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1472;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 131506283 rs12917 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1505;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 131967693 rs17297984 T A 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.20;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2724;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 133107496 rs61732111 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0288;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 133918372 rs10870252 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.39;AMR_AF=0.16;AN=2;ASN_AF=0.31;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2546;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.79 +10 133918466 rs10870253 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.49;AMR_AF=0.32;AN=2;ASN_AF=0.49;AVGPOST=0.9932;ERATE=0.0013;EUR_AF=0.37;LDAF=0.4189;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 133948634 rs2814182 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.96;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9942;ERATE=0.0032;EUR_AF=0.70;LDAF=0.8533;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 133948689 rs2637644 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.18;AMR_AF=0.41;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3360;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 133954011 rs2818387 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.55;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5087;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 133954111 rs9733324 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.14;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=0.9707;ERATE=0.0110;EUR_AF=0.32;LDAF=0.2455;RSQ=0.9403;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-2.13,-0.01,-2.16 +10 133955427 rs11592585 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=0.9989;ERATE=0.0018;EUR_AF=0.34;LDAF=0.2290;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 133961494 rs2818384 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.33;AMR_AF=0.67;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4656;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 133961564 rs2818383 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.43;AMR_AF=0.69;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4949;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 133963466 rs9419380 A G 100 PASS AA=a;AC=1;AF=0.77;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7724;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 133976706 rs12776458 G T 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.13;AMR_AF=0.48;AN=2;ASN_AF=0.31;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.48;LDAF=0.3594;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-1.32,-0.02,-5.00 +10 134013856 rs871883 G T 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.07;AMR_AF=0.47;AN=2;ASN_AF=0.70;AVGPOST=0.9954;ERATE=0.0062;EUR_AF=0.48;LDAF=0.4426;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134013990 rs2247705 G A 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.79;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=0.9972;ERATE=0.0145;EUR_AF=0.81;LDAF=0.8452;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134016115 rs2637629 G A 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.72;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=0.9992;ERATE=0.0009;EUR_AF=0.63;LDAF=0.7573;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134017295 rs12313 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.76;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9979;ERATE=0.0009;EUR_AF=0.80;LDAF=0.8359;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134036193 rs2818401 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.68;AMR_AF=0.82;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7875;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134038715 rs902629 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.92;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9784;ERATE=0.0041;EUR_AF=0.82;LDAF=0.8813;RSQ=0.9223;SNPSOURCE=LOWCOV,EXOME;THETA=0.0100;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134039132 rs2130893 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.06;AMR_AF=0.30;AN=2;ASN_AF=0.09;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1913;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134039242 rs2130894 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.30;AN=2;ASN_AF=0.09;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1904;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134040290 rs2306982 C A 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.34;AMR_AF=0.48;AN=2;ASN_AF=0.41;AVGPOST=0.9945;ERATE=0.0010;EUR_AF=0.44;LDAF=0.4160;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134151034 rs2259594 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.44;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3720;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 134155774 rs116720164 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0166;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134161517 rs2474329 C T 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.15;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1015;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 134161633 rs2474328 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.98;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8305;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 134165291 rs2261222 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.84;AMR_AF=0.78;AN=2;ASN_AF=0.83;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7968;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 134218269 rs11146363 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.41;AMR_AF=0.50;AN=2;ASN_AF=0.62;AVGPOST=0.9667;ERATE=0.0056;EUR_AF=0.58;LDAF=0.5344;RSQ=0.9468;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 134218296 rs10747057 C G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.68;AMR_AF=0.49;AN=2;ASN_AF=0.69;AVGPOST=0.9574;ERATE=0.0044;EUR_AF=0.44;LDAF=0.5631;RSQ=0.9361;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-4.10 +10 134459388 rs1133400 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=0.9966;ERATE=0.0089;EUR_AF=0.22;LDAF=0.2320;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 134598628 rs2804003 A G 100 PASS AA=G;AC=1;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9713;RSQ=0.9674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 134748331 rs12781609 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.35;AMR_AF=0.46;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3698;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 134750604 rs10870211 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9890;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +10 134910629 rs11101914 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.24;AMR_AF=0.31;AN=2;ASN_AF=0.65;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3744;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134942166 rs2806452 A G 100 PASS AA=.;AC=1;AF=0.49;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.57;AVGPOST=0.9885;ERATE=0.0009;EUR_AF=0.43;LDAF=0.4915;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +10 134973995 rs71503783 G A 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.30;AMR_AF=0.36;AN=2;ASN_AF=0.10;AVGPOST=0.9897;ERATE=0.0025;EUR_AF=0.29;LDAF=0.2542;RSQ=0.9792;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.24 +10 134981837 rs2998151 T C 100 PASS AA=t;AC=2;AF=0.64;AFR_AF=0.71;AMR_AF=0.71;AN=2;ASN_AF=0.57;AVGPOST=0.9925;ERATE=0.0127;EUR_AF=0.62;LDAF=0.6402;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 134997480 rs57510763 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.11;AMR_AF=0.38;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3994;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134997514 rs67800134 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.11;AMR_AF=0.37;AN=2;ASN_AF=0.59;AVGPOST=0.9976;ERATE=0.0015;EUR_AF=0.46;LDAF=0.3962;RSQ=0.9967;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 134999602 rs3008393 G C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.72;AMR_AF=0.78;AN=2;ASN_AF=0.70;AVGPOST=0.9958;ERATE=0.0004;EUR_AF=0.85;LDAF=0.7705;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.19,-0.00 +10 135000148 rs3810965 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.11;AMR_AF=0.37;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3977;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135000159 rs3810964 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.11;AMR_AF=0.37;AN=2;ASN_AF=0.59;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3978;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135010662 rs6537590 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.11;AVGPOST=0.9947;ERATE=0.0015;EUR_AF=0.32;LDAF=0.2266;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 135012162 rs2998139 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=0.9822;ERATE=0.0046;EUR_AF=0.55;LDAF=0.5463;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.61,-0.12 +10 135012429 rs3008390 T A 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.58;AVGPOST=0.9753;ERATE=0.0011;EUR_AF=0.43;LDAF=0.4003;RSQ=0.9652;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.35,-0.01,-1.69 +10 135012430 rs3008389 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.58;AVGPOST=0.9812;ERATE=0.0007;EUR_AF=0.54;LDAF=0.5269;RSQ=0.9715;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-2.32,-0.01,-1.66 +10 135012652 rs3008388 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.64;AVGPOST=0.9947;ERATE=0.0017;EUR_AF=0.45;LDAF=0.4123;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.14,-0.03,-5.00 +10 135012672 rs138963989 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0112;RSQ=0.9246;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.20 +10 135015427 rs9418941 C A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.55;LDAF=0.5482;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.16,-0.00,-3.38 +10 135020315 rs3008375 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.64;AMR_AF=0.82;AN=2;ASN_AF=0.75;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.88;LDAF=0.7825;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135051562 rs2998143 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.79;AMR_AF=0.67;AN=2;ASN_AF=0.99;AVGPOST=0.9419;ERATE=0.0024;EUR_AF=0.58;LDAF=0.7436;RSQ=0.9007;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +10 135097434 rs2995326 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.89;LDAF=0.9014;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135098672 rs3008334 G A 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.88;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8972;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135103305 rs201043382 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.31;AMR_AF=0.06;AN=2;AVGPOST=0.9936;ERATE=0.0025;EUR_AF=0.04;LDAF=0.0967;RSQ=0.9711;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 135103315 rs113340564 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.35;AMR_AF=0.07;AN=2;AVGPOST=0.9946;ERATE=0.0038;EUR_AF=0.04;LDAF=0.1053;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 135105983 rs2864768 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.07;AMR_AF=0.45;AN=2;ASN_AF=0.58;AVGPOST=0.9812;ERATE=0.0156;EUR_AF=0.46;LDAF=0.4075;RSQ=0.9749;SNPSOURCE=EXOME;THETA=0.0091;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135107301 rs2860672 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.57;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9901;ERATE=0.0025;EUR_AF=0.06;LDAF=0.1773;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.20,-0.43 +10 135142320 rs41283333 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.02;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0299;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.10,-0.68 +10 135160950 rs4838721 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.47;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=0.9988;ERATE=0.0029;EUR_AF=0.82;LDAF=0.7542;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135165623 rs34780987 G A 100 PASS AA=g;AC=1;AF=0.06;AFR_AF=0.22;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0622;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 135165790 rs4369319 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9940;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135169204 rs74164154 A G 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.24;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 135170788 rs41317286 G A 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.23;AMR_AF=0.06;AN=2;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0657;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.62,-0.00,-3.62 +10 135171516 rs146000004 C A 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.19;AMR_AF=0.06;AN=2;AVGPOST=0.9828;ERATE=0.0012;EUR_AF=0.02;LDAF=0.0601;RSQ=0.8919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:0.950:-0.19,-0.46,-2.42 +10 135179458 rs6537598 G C 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.76;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9346;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135180430 rs2230261 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9977;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9508;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135184126 rs1049951 G A 100 PASS AA=g;AC=2;AF=0.85;AFR_AF=0.49;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.95;LDAF=0.8453;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135186806 rs10466126 A G 100 PASS AA=a;AC=1;AF=0.69;AFR_AF=0.29;AMR_AF=0.68;AN=2;ASN_AF=0.92;AVGPOST=0.9251;ERATE=0.0092;EUR_AF=0.77;LDAF=0.6789;RSQ=0.8915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 0|1:0.800:-0.06,-0.92,-5.00 +10 135197419 rs4240520 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.57;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8268;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135202594 rs10776679 T C 100 PASS AA=N;AC=2;AF=0.88;AFR_AF=0.66;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.96;LDAF=0.8829;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135204799 rs6537600 C T 100 PASS AA=c;AC=2;AF=0.86;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8552;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135204950 rs1046175 C G 100 PASS AA=N;AC=2;AF=0.86;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8549;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135205009 rs1046178 C G 100 PASS AA=c;AC=2;AF=0.86;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8548;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135211892 rs2252852 A G 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +10 135232934 rs2243619 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.34;AMR_AF=0.54;AN=2;ASN_AF=0.59;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.68;LDAF=0.5589;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-0.28,-0.33,-4.10 +10 135233541 rs2255246 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0019;EUR_AF=1.00;LDAF=0.9957;RSQ=0.8802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135347397 rs915909 T C 100 PASS AA=c;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9735;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135351362 rs2515641 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.34;AMR_AF=0.82;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.88;LDAF=0.7295;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +10 135352509 rs2480257 T A 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.16;AMR_AF=0.63;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.76;LDAF=0.5467;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 135352514 rs2480256 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.29;AMR_AF=0.65;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.76;LDAF=0.5778;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 135368835 rs3737034 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1504;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135368967 rs11592461 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1503;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135369258 rs3827688 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1504;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135369532 rs3747881 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.19;AMR_AF=0.19;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1847;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135370343 rs8181464 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1504;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135370370 rs8181332 C T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1764;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135370633 rs8181356 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1504;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135370639 rs8181357 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1504;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135371466 rs2987792 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.18;AMR_AF=0.63;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5535;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +10 135371467 rs8181456 T C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1504;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135372870 rs11101825 C G 100 PASS AA=.;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1503;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135373591 rs3813873 C T 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1613;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135373694 rs10857752 G A 100 PASS AA=.;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1504;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +10 135438806 rs202242175 G T 100 PASS AA=.;AC=2;AF=0.45;AFR_AF=0.40;AMR_AF=0.51;AN=2;ASN_AF=0.52;AVGPOST=0.7649;ERATE=0.0259;EUR_AF=0.39;LDAF=0.4858;RSQ=0.5640;SNPSOURCE=EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:1.750:-5.00,-0.72,-0.09 +9 117713 rs2492216 T C 100 PASS AA=.;AC=1;AF=0.54;AFR_AF=0.64;AMR_AF=0.54;AN=2;ASN_AF=0.47;AVGPOST=0.9197;ERATE=0.0260;EUR_AF=0.53;LDAF=0.5357;RSQ=0.8902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +9 178895 rs200809115 A C 100 PASS AA=.;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.08;AVGPOST=0.8493;ERATE=0.0309;EUR_AF=0.16;LDAF=0.1562;RSQ=0.5759;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:0.950:-0.48,-0.48,-0.48 +9 712060 rs4465020 G C 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.05;AMR_AF=0.23;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0017;EUR_AF=0.41;LDAF=0.2205;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 712137 rs912175 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1974;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 712156 rs912174 T G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.22;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2165;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 712599 rs11789987 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2356;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 712674 rs79835909 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.08;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.0746;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 712766 rs3824420 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.16;AVGPOST=0.9992;ERATE=0.0021;EUR_AF=0.01;LDAF=0.0675;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 713307 rs4742277 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.08;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 730054 rs12352313 A G 100 PASS AA=a;AC=1;AF=0.15;AFR_AF=0.40;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.1499;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 738238 rs2296052 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.89;AMR_AF=0.61;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.58;LDAF=0.5805;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +9 740972 rs7032867 G C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.52;AMR_AF=0.29;AN=2;ASN_AF=0.16;AVGPOST=0.9977;ERATE=0.0114;EUR_AF=0.41;LDAF=0.3503;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 742342 rs10733535 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9954;RSQ=0.9470;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 967981 rs279895 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9243;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 990840 rs7021244 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.22;AVGPOST=0.9980;ERATE=0.0290;EUR_AF=0.22;LDAF=0.1659;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 1056728 rs3824419 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0012;EUR_AF=0.35;LDAF=0.3443;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 1057204 rs4741029 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.57;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2268;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 1057318 rs9140 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.87;AMR_AF=0.69;AN=2;ASN_AF=0.84;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7491;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 2029018 rs10964468 G A 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.24;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1508;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +9 2170512 rs3793511 G C 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.21;AMR_AF=0.53;AN=2;ASN_AF=0.48;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.54;LDAF=0.4486;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 2182290 rs7034409 G A 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.26;AMR_AF=0.15;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1471;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 2191309 rs2296212 C G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1814;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 2717698 rs7029012 C G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.67;AMR_AF=0.71;AN=2;ASN_AF=0.80;AVGPOST=0.9961;ERATE=0.0055;EUR_AF=0.56;LDAF=0.6734;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 2717922 rs10967705 C G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.59;AMR_AF=0.72;AN=2;ASN_AF=0.79;AVGPOST=0.9980;ERATE=0.0065;EUR_AF=0.57;LDAF=0.6547;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 2718498 rs10967709 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=0.9924;ERATE=0.0034;EUR_AF=0.10;LDAF=0.0880;RSQ=0.9622;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 2718534 rs12237048 C G 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.31;AMR_AF=0.51;AN=2;ASN_AF=0.73;AVGPOST=0.9832;ERATE=0.0046;EUR_AF=0.48;LDAF=0.5143;RSQ=0.9759;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 2729475 rs41312842 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0489;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 2729686 rs12352254 C G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.35;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1294;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 2729733 rs41306094 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0804;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 2804393 rs12171 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.03;LDAF=0.0851;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 4118111 rs6415788 G T 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.59;AMR_AF=0.72;AN=2;ASN_AF=0.87;AVGPOST=0.9738;ERATE=0.0093;EUR_AF=0.60;LDAF=0.6868;RSQ=0.9560;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 4118208 rs806052 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9967;RSQ=0.6155;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.56,-0.01 +9 4490760 rs76972569 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0126;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 4561421 rs72694015 T C 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2075;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 4574022 rs12682807 A C 100 PASS AA=A;AC=2;AF=0.12;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.20;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1186;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 4576680 rs301430 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.49;AMR_AF=0.39;AN=2;ASN_AF=0.61;AVGPOST=0.9992;ERATE=0.0054;EUR_AF=0.33;LDAF=0.4487;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 4576774 rs1471786 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2285;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 4793254 rs841990 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.22;AMR_AF=0.63;AN=2;ASN_AF=0.70;AVGPOST=0.9872;ERATE=0.0033;EUR_AF=0.66;LDAF=0.5670;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.71,-0.01 +9 4844507 rs295259 G T 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9196;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 4844704 rs2236497 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2445;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 4860300 rs15583 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.48;AMR_AF=0.70;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.70;LDAF=0.5905;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 5335639 rs2146074 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6771;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 5557672 rs7854303 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 5805001 rs10975289 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.12;AMR_AF=0.44;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4235;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 5832728 rs1131727 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.13;AMR_AF=0.44;AN=2;ASN_AF=0.73;AVGPOST=0.9805;ERATE=0.0021;EUR_AF=0.37;LDAF=0.4176;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-2.86,-0.00,-2.01 +9 5921844 rs117286418 G T 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0530;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 5923326 rs7045445 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.35;AMR_AF=0.60;AN=2;ASN_AF=0.54;AVGPOST=0.9937;ERATE=0.0015;EUR_AF=0.70;LDAF=0.5623;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 5929167 rs7029054 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.69;AMR_AF=0.87;AN=2;ASN_AF=0.72;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.91;LDAF=0.8020;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 5968416 rs3739649 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.76;AMR_AF=0.91;AN=2;ASN_AF=0.73;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8520;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 5969249 rs10739080 A G 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.70;LDAF=0.5753;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 5988333 rs2291055 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.72;AMR_AF=0.92;AN=2;ASN_AF=0.71;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8400;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 6007500 rs1061767 G A 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.11;AMR_AF=0.23;AN=2;ASN_AF=0.32;AVGPOST=0.9775;ERATE=0.0037;EUR_AF=0.21;LDAF=0.2229;RSQ=0.9512;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 6253571 rs10975519 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3954;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 6254568 rs75228791 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.39;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9808;ERATE=0.0144;EUR_AF=0.30;LDAF=0.3618;RSQ=0.9686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 6328947 rs3847262 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.80;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9365;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 6533010 rs2228098 C G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.70;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=0.9974;ERATE=0.0099;EUR_AF=0.64;LDAF=0.7445;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 6594978 rs11789777 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1934;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 7103816 rs3763651 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.64;AMR_AF=0.61;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.44;LDAF=0.6010;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 7174673 rs913588 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.34;AMR_AF=0.37;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3446;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 7174773 rs913589 G A 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.65;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5841;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 7799606 rs14059 C A 100 PASS AA=c;AC=1;AF=0.38;AFR_AF=0.28;AMR_AF=0.55;AN=2;ASN_AF=0.36;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3777;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 7799653 rs1127430 G T 100 PASS AA=g;AC=1;AF=0.38;AFR_AF=0.28;AMR_AF=0.55;AN=2;ASN_AF=0.34;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.38;LDAF=0.3743;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-2.92,-0.00,-5.00 +9 8319806 rs7873084 C T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.72;AMR_AF=0.38;AN=2;ASN_AF=0.39;AVGPOST=0.9941;ERATE=0.0051;EUR_AF=0.17;LDAF=0.3858;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 8331548 rs76379489 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0338;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 8389364 rs2279776 C G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.64;AMR_AF=0.45;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5270;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 8436560 rs1359117 A T 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.36;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1741;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 8436703 rs1359118 C G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.52;AMR_AF=0.59;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0027;EUR_AF=0.59;LDAF=0.5983;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 8485201 rs13286908 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 8485834 rs35929428 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0695;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 8485928 rs3824417 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0165;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 8518143 rs7026388 T C 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=0.9980;ERATE=0.0112;EUR_AF=0.16;LDAF=0.2971;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 8521244 rs3818346 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.44;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1920;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 12704725 rs2733832 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.05;AMR_AF=0.38;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.58;LDAF=0.2793;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 12775889 rs3750501 A G 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.50;AMR_AF=0.82;AN=2;ASN_AF=0.77;AVGPOST=0.9500;ERATE=0.0087;EUR_AF=0.82;LDAF=0.7235;RSQ=0.9163;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.950:-0.48,-0.48,-0.48 +9 13112116 rs10809904 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 13125201 rs2297003 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.39;AMR_AF=0.64;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5823;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 13126470 rs10738323 C G 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.27;AMR_AF=0.62;AN=2;ASN_AF=0.54;AVGPOST=0.9955;ERATE=0.0016;EUR_AF=0.69;LDAF=0.5440;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 13150531 rs10756457 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.68;AMR_AF=0.36;AN=2;ASN_AF=0.47;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4451;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 13192320 rs1331676 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9850;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +9 14120655 rs6474818 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9979;RSQ=0.9343;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.99,-0.00 +9 14306944 rs4741362 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14618930 rs13284437 A G 100 PASS AA=A;AC=1;AF=0.0032;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 14640055 rs6474849 C T 100 PASS AA=T;AC=1;AF=0.90;AFR_AF=0.79;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8968;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 14662260 rs17215796 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9958;ERATE=0.0128;EUR_AF=0.16;LDAF=0.0928;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 14737506 rs10961689 T G 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.69;AMR_AF=0.71;AN=2;ASN_AF=0.73;AVGPOST=0.9607;ERATE=0.0477;EUR_AF=0.69;LDAF=0.6952;RSQ=0.9232;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14737616 rs10961690 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.79;AMR_AF=0.74;AN=2;ASN_AF=0.79;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7655;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14756483 rs10810233 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.15;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9941;ERATE=0.0005;EUR_AF=0.52;LDAF=0.4420;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0142;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.96,-0.00 +9 14759725 rs7045154 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9849;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14770580 rs1874109 G A 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.14;AMR_AF=0.34;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3026;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14775779 rs1874108 A G 100 PASS AA=A;AC=2;AF=0.18;AFR_AF=0.07;AMR_AF=0.21;AN=2;ASN_AF=0.14;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1847;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14775853 rs1032474 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.83;AMR_AF=0.86;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8583;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14801710 rs35870000 C A 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.09;AMR_AF=0.44;AN=2;ASN_AF=0.22;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2714;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14846036 rs2779500 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.45;AMR_AF=0.52;AN=2;ASN_AF=0.31;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.62;LDAF=0.4830;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 14851617 rs2818940 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7803;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 14859356 rs10961757 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.52;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2725;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 15486958 rs2737828 A T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9392;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 15591372 rs4741510 T A 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.60;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.44;LDAF=0.3903;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 15784496 rs2382540 C G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.42;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.4150;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 15784631 rs1539172 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.54;AMR_AF=0.39;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.48;LDAF=0.4433;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 16435714 rs3739715 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.07;LDAF=0.0676;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 16738312 rs7858712 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8976;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +9 17135115 rs41306071 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.25;LDAF=0.1744;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 17135434 rs12003380 G C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.59;AMR_AF=0.44;AN=2;ASN_AF=0.65;AVGPOST=0.9906;ERATE=0.0019;EUR_AF=0.44;LDAF=0.5272;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +9 17135443 rs111496959 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.10;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=0.9941;ERATE=0.0017;EUR_AF=0.25;LDAF=0.1827;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.68,-0.10 +9 17273731 rs3808795 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2844;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 17273878 rs12376938 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1737;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 17342383 rs1442527 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9500;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 17366568 rs4961548 A T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9972;ERATE=0.0008;EUR_AF=0.60;LDAF=0.6084;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 17394536 rs7035276 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.65;AMR_AF=0.83;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7893;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 17394996 rs3739489 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.72;AMR_AF=0.85;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8267;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 17395108 rs3739488 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.65;AMR_AF=0.83;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7897;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 17409366 rs2780211 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.73;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8303;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 17579198 rs4961574 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9984;RSQ=0.1229;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +9 18504916 rs2277160 T A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.67;AMR_AF=0.58;AN=2;ASN_AF=0.44;AVGPOST=0.9990;ERATE=0.0028;EUR_AF=0.59;LDAF=0.5690;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 18681821 rs13293151 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.12;AMR_AF=0.33;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3007;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 18684837 rs41268981 T G 100 PASS AA=T;AC=2;AF=0.04;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9954;ERATE=0.0012;EUR_AF=0.10;LDAF=0.0445;RSQ=0.9684;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +9 18775810 rs934472 C A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.41;AMR_AF=0.34;AN=2;ASN_AF=0.47;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4350;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 18776840 rs1549986 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.93;LDAF=0.9580;RSQ=0.9575;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.14,-0.00 +9 18777196 rs41268983 A C 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.10;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.15;LDAF=0.0961;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 18777368 rs7033684 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.71;AMR_AF=0.57;AN=2;ASN_AF=0.72;AVGPOST=0.9884;ERATE=0.0046;EUR_AF=0.72;LDAF=0.6931;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +9 18777422 rs45579937 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.11;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.18;LDAF=0.1098;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.07,-0.80 +9 18826500 rs934469 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.52;AMR_AF=0.65;AN=2;ASN_AF=0.49;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6237;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +9 18888089 rs10963818 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.11;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0805;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 18889544 rs10963819 A T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.76;AMR_AF=0.48;AN=2;ASN_AF=0.65;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6142;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 18889789 rs34099646 G A 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.52;AMR_AF=0.44;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4984;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-1.26,-0.02,-5.00 +9 18941881 rs41268995 A T 100 PASS AA=a;AC=1;AF=0.11;AFR_AF=0.35;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1142;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 18950787 rs6475273 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.90;AMR_AF=0.73;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7371;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 18950895 rs7021572 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.16;AMR_AF=0.62;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5160;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 18950980 rs6475274 A T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.93;AMR_AF=0.73;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7455;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 19032907 rs17810415 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1609;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 19058425 rs11515236 G A 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.44;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=0.9626;ERATE=0.0413;EUR_AF=0.17;LDAF=0.2148;RSQ=0.9261;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.44 +9 19063108 rs13302748 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.18;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9981;ERATE=0.0019;EUR_AF=0.43;LDAF=0.3689;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 19076673 rs13286328 G C 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3789;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 19082832 rs7869414 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.24;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1161;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 19087154 rs7875404 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.25;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1174;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 19087196 rs7860085 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.23;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0868;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 19126281 rs2228416 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.23;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0759;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 19326053 rs2256093 G T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.51;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=0.9975;ERATE=0.0049;EUR_AF=0.11;LDAF=0.1845;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 19341045 rs928128 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.37;AMR_AF=0.21;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.23;LDAF=0.2062;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 19521062 rs151165131 A G 100 PASS AA=A;AC=1;AF=0.0037;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 19550308 rs4977555 A T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.87;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8733;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 19576949 rs2383101 T G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.79;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8501;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 19622268 rs4977308 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.77;AMR_AF=0.80;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7913;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 20764870 rs10511687 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.29;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2569;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 20765097 rs7871811 A G 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6431;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 20778631 rs7875153 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.77;AMR_AF=0.92;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8331;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 20866974 rs7875872 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 20885240 rs2383156 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.56;AMR_AF=0.70;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0035;EUR_AF=0.58;LDAF=0.5963;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 20923618 rs7044447 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3816;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 20948311 rs35470485 A G 100 PASS AA=A;AC=1;AF=0.05;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0467;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 20953049 rs3206852 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.28;AMR_AF=0.28;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3529;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 20978306 rs10811445 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.25;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3387;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 20978312 rs4977616 A G 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9730;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 20982328 rs10964782 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.25;AMR_AF=0.27;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3432;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 20988426 rs4977881 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.76;AMR_AF=0.72;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7838;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 21029330 rs2298260 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.25;AMR_AF=0.36;AN=2;ASN_AF=0.51;AVGPOST=0.9797;ERATE=0.0165;EUR_AF=0.27;LDAF=0.3395;RSQ=0.9684;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 21077716 rs1051922 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.33;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3414;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 21166308 rs35082920 G T 100 PASS AA=N;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0082;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.05,-0.95 +9 21816758 rs7023954 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.44;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4104;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 21968199 rs11515 C G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.81;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9994;ERATE=0.0009;EUR_AF=0.85;LDAF=0.8846;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 22006273 rs2069426 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0727;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 22447759 rs13299803 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0094;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 23762176 rs73654364 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9993;ERATE=0.0014;EUR_AF=0.02;LDAF=0.0584;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 25677698 rs72631815 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=0.9865;ERATE=0.0009;EUR_AF=0.32;LDAF=0.2040;RSQ=0.9694;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-0.35,-0.41,-0.78 +9 25677933 rs35110225 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.48;AMR_AF=0.48;AN=2;ASN_AF=0.31;AVGPOST=0.9754;ERATE=0.0017;EUR_AF=0.57;LDAF=0.4687;RSQ=0.9647;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +9 25677953 rs34498078 T C 100 PASS AA=C;AC=1;AF=0.91;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=0.85;AVGPOST=0.9940;ERATE=0.0005;EUR_AF=0.93;LDAF=0.9076;RSQ=0.9726;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-3.80 +9 25678122 rs72631814 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.15;AMR_AF=0.18;AN=2;ASN_AF=0.11;AVGPOST=0.9602;ERATE=0.0009;EUR_AF=0.28;LDAF=0.1856;RSQ=0.9030;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.49 +9 27047246 rs10812520 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.78;AMR_AF=0.79;AN=2;ASN_AF=0.89;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7922;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +9 27173180 rs666478 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.53;AMR_AF=0.57;AN=2;ASN_AF=0.28;AVGPOST=0.9989;ERATE=0.0123;EUR_AF=0.52;LDAF=0.4664;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0210;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 27183463 rs682632 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9840;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 27197282 rs10812532 T G 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0790;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 27202870 rs639225 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4388;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 27203134 rs638203 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4399;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 27205021 rs542913 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1691;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 27213612 rs41272847 G C 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0275;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 27218726 rs667250 C T 100 PASS AA=t;AC=1;AF=0.88;AFR_AF=0.93;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8844;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 27290984 rs2383724 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.82;AMR_AF=0.88;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8711;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 27292529 rs41272857 C T 100 PASS AA=c;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.17;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0740;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 27296595 rs7044345 C G 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.49;AMR_AF=0.96;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8272;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 27455095 rs12379154 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.15;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.46;LDAF=0.4228;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 27524327 rs58668566 C A 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.17;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0535;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 27524731 rs700785 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9433;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 27524980 rs41272879 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0270;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 27556780 rs10122902 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.16;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.16;LDAF=0.2135;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 27561628 rs17769294 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 27562352 rs2589050 T C 100 PASS AA=t;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 32405639 rs41298178 T G 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1170;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 32407466 rs56127964 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0087;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 32418237 rs2026739 G T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.53;AMR_AF=0.68;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6490;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 32425910 rs3780473 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3702;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 32436303 rs202244128 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 32459450 rs3205166 T G 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3473;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 32488237 rs10813825 G C 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.17;AMR_AF=0.33;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2747;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 32526146 rs10813831 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1913;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 32541532 rs12348918 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1348;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 32542204 rs10971019 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1344;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 32784838 rs1810807 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.25;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=0.28;LDAF=0.2217;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 33240165 rs555445 G C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.67;AMR_AF=0.29;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3506;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +9 33240225 rs706107 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.67;AMR_AF=0.29;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3506;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 33264540 rs1071545 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9808;RSQ=0.9543;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.89,-0.01 +9 33270748 rs831271 G T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.71;AMR_AF=0.79;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7953;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 33290532 rs830576 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.79;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 33318977 rs144117681 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0014;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 33354937 rs4878534 G A 100 PASS AA=G;AC=2;AF=0.06;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0567;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 33385241 rs62542743 C A 100 PASS AA=c;AC=1;AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0261;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 33395196 rs642636 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9950;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9864;RSQ=0.8610;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.73,-0.00 +9 33442952 rs2228332 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.76;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0027;EUR_AF=0.61;LDAF=0.6682;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 33442986 rs2231231 A C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.76;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0031;EUR_AF=0.66;LDAF=0.6966;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 33447424 rs591810 C G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.76;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7668;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.83,-0.07 +9 33465182 rs2785210 G A 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.59;AMR_AF=0.51;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.57;LDAF=0.5394;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.02,-0.00 +9 33467123 rs35291866 G A 100 PASS AA=G;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.01;LDAF=0.0042;RSQ=0.9834;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 33467983 rs679644 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 33927899 rs307692 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9972;RSQ=0.9472;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 34017106 rs1785506 C T 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.50;AMR_AF=0.71;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6444;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 34089395 rs2296897 T C 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.18;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.38;LDAF=0.2838;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 34093274 rs16935392 G C 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2107;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 34106410 rs10971917 C T 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2102;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +9 34256347 rs10814083 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.29;AMR_AF=0.38;AN=2;ASN_AF=0.69;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4228;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 34256539 rs36025573 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0265;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 34290407 rs11790773 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1675;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 34310927 rs10972048 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.10;AMR_AF=0.55;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4181;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 34382726 rs3808876 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.37;AMR_AF=0.63;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6065;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 34397545 rs11790577 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0013;EUR_AF=0.51;LDAF=0.4266;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 34400980 rs117759827 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0106;RSQ=0.9961;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 34500879 rs10814116 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1901;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 34556453 rs2070802 A T 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 34569010 rs9695558 T A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9538;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.65,-0.01 +9 34618641 rs3802427 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.24;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2308;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 34622389 rs3808869 A C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.75;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5648;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 34623718 rs10814129 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2300;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-2.79 +9 34635598 rs4879809 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +9 34637690 rs1800866 T G 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=0.9654;ERATE=0.0038;EUR_AF=0.16;LDAF=0.2237;RSQ=0.9261;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:0.850:-0.11,-0.66,-4.70 +9 34710084 rs11574915 A C 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0879;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 35043291 rs615474 G T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.62;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6617;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35060302 rs684562 T C 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.69;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.4269;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35060955 rs2258240 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.75;AMR_AF=0.83;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7038;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35062972 rs514492 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.75;AMR_AF=0.83;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7024;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35074917 rs587118 T C 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.03;AMR_AF=0.47;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.2522;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35077441 rs554098 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.75;AMR_AF=0.83;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7020;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35089048 rs556766 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35093020 rs568300 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.39;AMR_AF=0.61;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4877;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35100002 rs664357 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35100569 rs586017 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.71;AMR_AF=0.83;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7001;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35101870 rs693325 C G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.64;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6755;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35107765 rs13287211 C A 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.03;AMR_AF=0.41;AN=2;ASN_AF=0.0035;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2133;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35107858 rs7039828 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9908;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35546735 rs1535422 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35562549 rs755774 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.28;AVGPOST=0.9971;ERATE=0.0029;EUR_AF=0.44;LDAF=0.3720;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.05,-0.00,-5.00 +9 35616583 rs2095858 A T 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.38;AMR_AF=0.53;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5183;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35650458 rs2297880 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.54;AVGPOST=0.9987;ERATE=0.0032;EUR_AF=0.72;LDAF=0.6174;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 35660990 rs1339374 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.64;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8285;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 35662251 rs2297879 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.10;AMR_AF=0.38;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3309;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 35707054 rs741917 C T 100 PASS AA=T;AC=2;AF=0.20;AFR_AF=0.16;AMR_AF=0.33;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1988;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35711806 rs2249250 G T 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.42;AMR_AF=0.67;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.70;LDAF=0.5981;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35712823 rs2249133 G A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.64;AMR_AF=0.64;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5753;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.88,-0.01 +9 35748322 rs142319191 T G 100 PASS AA=T;AC=1;AF=0.0018;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0019;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 35809328 rs2281645 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.30;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0023;EUR_AF=0.31;LDAF=0.2043;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 35845929 rs7848557 A C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.72;AMR_AF=0.90;AN=2;ASN_AF=0.84;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8502;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 35870001 rs7044405 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.75;AMR_AF=0.64;AN=2;ASN_AF=0.64;AVGPOST=0.9992;ERATE=0.0061;EUR_AF=0.60;LDAF=0.6534;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 35870225 rs72727089 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.30;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.30;LDAF=0.1838;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 35906471 rs76452347 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.0035;AVGPOST=0.9896;ERATE=0.0027;EUR_AF=0.21;LDAF=0.1172;RSQ=0.9648;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 35906519 rs79284865 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9905;ERATE=0.0186;EUR_AF=0.22;LDAF=0.1933;RSQ=0.9771;SNPSOURCE=LOWCOV,EXOME;THETA=0.0217;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 36063743 rs942478 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.85;AMR_AF=0.89;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8501;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 36169494 rs3739610 G A 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.45;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3423;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 36169598 rs3739609 T C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.59;AMR_AF=0.31;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4579;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 36276857 rs7875447 A G 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.73;AMR_AF=0.64;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6576;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 36674842 rs2274473 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.45;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7939;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 36840623 rs3780135 G A 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.35;AMR_AF=0.88;AN=2;ASN_AF=0.89;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.95;LDAF=0.7868;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.34,-0.02 +9 37302155 rs10814518 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0019;EUR_AF=0.38;LDAF=0.2825;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 37426524 rs2736664 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=1.00;LDAF=0.9392;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 37429814 rs309458 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.75;AMR_AF=0.86;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.92;LDAF=0.8684;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 37441808 rs309450 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 37492721 rs3739575 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0941;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 37503124 rs7047823 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9135;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 37503241 rs11792930 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9981;ERATE=0.0040;EUR_AF=0.10;LDAF=0.1071;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 37512734 rs10973387 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.33;AMR_AF=0.37;AN=2;ASN_AF=0.38;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.30;LDAF=0.3372;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 37529286 rs34323368 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0576;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 37531872 rs11789166 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0658;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 37537557 rs7044153 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.31;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5777;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 37707392 rs2296557 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1527;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 37729786 rs1359590 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.27;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2000;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 37735680 rs61740795 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 37737283 rs2296552 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.52;AMR_AF=0.56;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5206;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +9 37740637 rs2281872 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.64;AMR_AF=0.63;AN=2;ASN_AF=0.54;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6036;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 37745413 rs3747541 G A 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.60;AMR_AF=0.39;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3720;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 37782111 rs7158 C T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.59;AMR_AF=0.57;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5352;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 37801444 rs74987730 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1042;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-0.24,-0.40,-1.55 +9 37855003 rs7040503 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.31;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1662;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 37948724 rs3827519 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.10;AN=2;ASN_AF=0.14;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1220;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 37974743 rs1138374 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.70;AMR_AF=0.50;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6184;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 38016158 rs17847953 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.16;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0462;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 38068451 rs112858544 T C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9975;ERATE=0.0007;EUR_AF=0.0013;LDAF=0.0245;RSQ=0.9531;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 38395940 rs2228094 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9294;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 38396065 rs2073478 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.28;AMR_AF=0.43;AN=2;ASN_AF=0.29;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.60;LDAF=0.4199;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 38396502 rs4878199 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9306;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 38414067 rs12375529 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2487;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 40772067 rs201307203 C T 100 PASS AA=c;AC=2;AF=0.41;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.44;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4146;RSQ=0.9940;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.82,-0.07 +9 70993081 rs145607092 G C 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9572;ERATE=0.0050;EUR_AF=0.31;LDAF=0.3473;RSQ=0.9373;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +9 71098986 rs78291377 C T 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.06;AN=2;ASN_AF=0.31;AVGPOST=0.9971;ERATE=0.0016;EUR_AF=0.02;LDAF=0.1130;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 71098987 rs10868913 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.08;AN=2;ASN_AF=0.31;AVGPOST=0.9976;ERATE=0.0007;EUR_AF=0.04;LDAF=0.1571;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 71114312 rs12685375 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3112;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 71534678 rs11144305 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0718;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 71555522 rs10746974 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.53;AMR_AF=0.90;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7299;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 71650752 rs2481598 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9560;ERATE=0.0016;EUR_AF=0.99;LDAF=0.9560;RSQ=0.6073;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +9 71668197 rs3829062 T C 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.39;AMR_AF=0.53;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5050;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 71831398 rs2498417 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=0.9948;ERATE=0.0029;EUR_AF=0.91;LDAF=0.9027;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 71843023 rs2309428 C A 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.67;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8054;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 71852760 rs2309421 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.42;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2902;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 71862975 rs2282336 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2888;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 71862987 rs2095876 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2893;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 71865932 rs2282335 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.48;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.38;LDAF=0.3274;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 72064749 rs2781532 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9604;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 72131577 rs34788368 A C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.33;AMR_AF=0.17;AN=2;ASN_AF=0.28;AVGPOST=0.9963;ERATE=0.0009;EUR_AF=0.07;LDAF=0.1999;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.900:-0.01,-1.69,-5.00 +9 72459567 rs10780678 G T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.38;AMR_AF=0.17;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2409;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 72741312 rs1998972 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.63;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8875;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 72783608 rs10780871 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.74;AMR_AF=0.89;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8729;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 72897434 rs1180116 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8675;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 72901096 rs1180123 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 73002648 rs7020167 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9868;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 73150873 rs17535963 T G 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2123;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 73150918 rs41287373 C T 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2096;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 73151715 rs7033976 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.84;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.86;LDAF=0.8944;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 73213610 rs4744605 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.79;AMR_AF=0.87;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.76;LDAF=0.8025;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 73255432 rs1538669 G C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.34;AMR_AF=0.72;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6331;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 73296400 rs10123161 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3350;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 73442724 rs1034538 C T 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.96;AMR_AF=0.82;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7614;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 73461337 rs7862440 T A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.57;AMR_AF=0.59;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.4922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 74300640 rs2310021 A G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.94;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8811;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 74324149 rs7046059 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.12;AMR_AF=0.18;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1161;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74340458 rs62547007 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0562;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74340659 rs41308888 A G 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0562;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74344821 rs25693 T C 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0562;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74344920 rs2297090 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0562;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74345158 rs25694 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0562;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74349846 rs25695 A T 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0562;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74354983 rs25691 A G 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0562;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74355028 rs25690 A G 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0567;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74360096 rs25689 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.34;AMR_AF=0.22;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.21;LDAF=0.2349;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74360234 rs25688 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.08;LDAF=0.0553;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74561883 rs10120169 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9464;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +9 74562050 rs35141787 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0937;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74838023 rs34979271 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.23;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1343;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 74975136 rs2809270 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9538;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 74975711 rs1853276 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9880;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 75303653 rs2589615 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.74;AMR_AF=0.48;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5096;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 75315438 rs1796993 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2754;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 75431076 rs34532421 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0594;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 75539077 rs3739962 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.20;AMR_AF=0.44;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3918;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 75540572 rs2288086 G A 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0435;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 75545882 rs13959 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.18;AMR_AF=0.44;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3894;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 75782510 rs1342017 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.55;AMR_AF=0.55;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.63;LDAF=0.4840;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 75783937 rs3739959 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.60;AMR_AF=0.55;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.63;LDAF=0.4941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 77245162 rs2146777 A T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9639;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 77407636 rs4145894 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2428;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 77436641 rs7018994 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.09;AMR_AF=0.46;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3623;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 77684690 rs3752955 A C 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.73;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=0.9988;ERATE=0.0028;EUR_AF=0.53;LDAF=0.6109;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 77752510 rs2273769 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1371;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 78506145 rs7020560 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.30;AMR_AF=0.06;AN=2;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1050;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 78506187 rs7040769 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.47;AMR_AF=0.12;AN=2;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1756;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 78686818 rs2297344 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1728;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 78711053 rs1416547 T G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2618;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 78773953 rs2297342 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.22;LDAF=0.2577;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 78799566 rs1537183 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9808;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 78803466 rs7046850 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.91;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9374;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 79259850 rs512951 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.66;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6206;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79318378 rs13290609 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.29;AMR_AF=0.21;AN=2;ASN_AF=0.50;AVGPOST=0.7537;ERATE=0.0804;EUR_AF=0.28;LDAF=0.3683;RSQ=0.5739;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-3.08,-0.00,-5.00 +9 79318471 rs560094 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8123;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79318677 rs561970 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8123;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79318921 rs620985 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.21;AMR_AF=0.63;AN=2;ASN_AF=0.37;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.57;LDAF=0.4462;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79318998 rs620552 A G 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8123;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79319050 rs620476 A C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8123;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79320640 rs512110 C T 100 PASS AA=c;AC=1;AF=0.82;AFR_AF=0.77;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8207;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79321276 rs517634 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8126;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79321871 rs577993 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.40;AMR_AF=0.66;AN=2;ASN_AF=0.45;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5291;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79322068 rs683866 G T 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.36;AMR_AF=0.63;AN=2;ASN_AF=0.45;AVGPOST=0.9923;ERATE=0.0035;EUR_AF=0.58;LDAF=0.4992;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79322674 rs680775 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.73;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8122;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79322720 rs680729 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.70;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.76;LDAF=0.8062;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79324179 rs530978 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.22;AMR_AF=0.63;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4492;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79324741 rs557352 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.33;AMR_AF=0.64;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4753;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79325558 rs600859 G C 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.29;AMR_AF=0.64;AN=2;ASN_AF=0.46;AVGPOST=0.9986;ERATE=0.0027;EUR_AF=0.58;LDAF=0.4944;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79325615 rs611461 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8131;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 79922839 rs2275549 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.52;AMR_AF=0.62;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5547;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +9 79986057 rs3737289 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.33;AMR_AF=0.54;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4091;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 80022415 rs2025846 A T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.55;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9992;ERATE=0.0023;EUR_AF=0.52;LDAF=0.5714;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 80049298 rs1801258 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.51;AMR_AF=0.29;AN=2;ASN_AF=0.36;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3625;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 80409345 rs1328529 A G 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0021;EUR_AF=0.52;LDAF=0.3313;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 80851350 rs10867166 G C 100 PASS AA=g;AC=2;AF=0.27;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.28;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.33;LDAF=0.2713;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.85,-0.01 +9 80851527 rs13292584 G A 100 PASS AA=g;AC=2;AF=0.27;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.28;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2709;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +9 80877777 rs11137579 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=0.9970;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2699;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.98,-0.00 +9 80912115 rs2277148 G C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.68;AVGPOST=0.9929;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7560;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0118;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +9 80919756 rs3739474 T G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.49;AMR_AF=0.56;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4955;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 80921446 rs944513 G T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.72;AMR_AF=0.81;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7277;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 80932574 rs3780194 T A 100 PASS AA=a;AC=2;AF=0.71;AFR_AF=0.80;AMR_AF=0.80;AN=2;ASN_AF=0.64;AVGPOST=0.9920;ERATE=0.0098;EUR_AF=0.66;LDAF=0.7066;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 82187750 rs1934610 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9967;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9912;RSQ=0.8648;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +9 82267732 rs2297499 C G 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.21;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.62;LDAF=0.5553;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 82320887 rs4877147 A T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.86;AMR_AF=0.88;AN=2;ASN_AF=0.77;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.86;LDAF=0.8400;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 84200439 rs147941591 G A 100 PASS AA=g;AC=1;AF=0.0037;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0039;RSQ=0.9645;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 84207898 rs7023704 C G 100 PASS AA=c;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.29;LDAF=0.2208;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 84267147 rs2228173 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.94;AMR_AF=0.93;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8967;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 84268878 rs2796447 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2729;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 85627408 rs4146960 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5549;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 85863091 rs10114696 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.16;AMR_AF=0.30;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2766;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 85905666 rs942283 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.32;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5685;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 86278817 rs7866234 C A 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4026;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 86278913 rs2781004 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0946;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 86284178 rs1044175 C A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.83;AMR_AF=0.73;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7495;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 86912815 rs3812510 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0951;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 86920236 rs7867504 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.85;AMR_AF=0.50;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.31;LDAF=0.5319;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 86928403 rs10780662 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1224;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 87285915 rs1187326 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.58;AMR_AF=0.76;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7239;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 87563562 rs2289656 G A 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1277;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 88211387 rs41282441 G C 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0108;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 88618462 rs1328923 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.56;LDAF=0.2759;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 88934624 rs700760 G T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.47;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5982;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 88959938 rs791323 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.47;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5969;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 89763851 rs458983 C G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8952;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 90114082 rs12552278 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0223;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 90258248 rs3793657 C T 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.80;AMR_AF=0.54;AN=2;ASN_AF=0.61;AVGPOST=0.9919;ERATE=0.0022;EUR_AF=0.38;LDAF=0.5586;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.96,-0.00 +9 90265015 rs3818584 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3967;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 90321017 rs36220123 T A 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.06;AN=2;ASN_AF=0.11;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0679;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 90500405 rs7850542 A C 100 PASS AA=.;AC=1;AF=0.75;AFR_AF=0.94;AMR_AF=0.71;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7531;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 90501448 rs4076795 C A 100 PASS AA=a;AC=1;AF=0.75;AFR_AF=0.94;AMR_AF=0.70;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7517;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 90501514 rs4076794 C G 100 PASS AA=g;AC=1;AF=0.29;AFR_AF=0.62;AMR_AF=0.26;AN=2;ASN_AF=0.25;AVGPOST=0.9982;ERATE=0.0017;EUR_AF=0.12;LDAF=0.2889;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 90502458 rs10868670 T A 100 PASS AA=N;AC=1;AF=0.75;AFR_AF=0.94;AMR_AF=0.71;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7527;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 90502819 rs10868671 T C 100 PASS AA=N;AC=1;AF=0.57;AFR_AF=0.65;AMR_AF=0.55;AN=2;ASN_AF=0.55;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5669;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 90503313 rs76003300 C G 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.11;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1111;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 90586043 rs622418 G A 100 PASS AA=.;AC=2;AF=0.33;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3288;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 90588814 rs570184 C G 100 PASS AA=.;AC=2;AF=0.78;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=0.47;AVGPOST=0.9990;ERATE=0.0045;EUR_AF=0.91;LDAF=0.7768;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 90588903 rs665983 C T 100 PASS AA=.;AC=2;AF=0.60;AFR_AF=0.57;AMR_AF=0.72;AN=2;ASN_AF=0.29;AVGPOST=0.9890;ERATE=0.0393;EUR_AF=0.81;LDAF=0.6014;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 90589016 rs666459 A G 100 PASS AA=.;AC=2;AF=0.56;AFR_AF=0.74;AMR_AF=0.54;AN=2;ASN_AF=0.30;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5633;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +9 91661746 rs7022911 C G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.67;AMR_AF=0.40;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3449;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 91680531 rs3818668 C G 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.32;AMR_AF=0.73;AN=2;ASN_AF=0.96;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7077;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 92003679 rs11526468 C T 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.38;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.31;LDAF=0.2627;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 93639803 rs1760132 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +9 93639846 rs290223 C G 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0049;EUR_AF=0.21;LDAF=0.3086;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 93641151 rs2306042 T C 100 PASS AA=T;AC=1;AF=0.06;AMR_AF=0.01;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0635;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 93657761 rs158689 A T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.71;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5644;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 94118258 rs10991898 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1037;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 94172507 rs142259863 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0019;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 94172992 rs146293258 C T 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 94485928 rs2230578 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.78;AMR_AF=0.76;AN=2;ASN_AF=0.93;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.72;LDAF=0.7918;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +9 94486321 rs10761129 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.78;AMR_AF=0.74;AN=2;ASN_AF=0.93;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.70;LDAF=0.7832;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 94486622 rs2230577 G A 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.14;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0845;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 94985637 rs556155 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1239;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 95005537 rs2230405 A C 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 95022383 rs41307467 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0233;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 95060630 rs3736836 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0210;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95063947 rs921122 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0233;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95068046 rs1133908 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.88;AMR_AF=0.33;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4072;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95072907 rs15717 G C 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0568;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95076665 rs2236344 C G 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0568;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95077470 rs61742574 T A 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0211;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95077827 rs17678735 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0235;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95080879 rs3737147 T C 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0604;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95084066 rs2274967 T C 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0572;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.77,-0.00,-5.00 +9 95088255 rs142766418 G T 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=0.9980;ERATE=0.0006;EUR_AF=0.02;LDAF=0.0218;RSQ=0.9582;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.00,-5.00 +9 95147894 rs41297183 A G 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0223;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95148084 rs2236529 C A 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95155563 rs2274966 C A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.74;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3753;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95179179 rs34860658 C T 100 PASS AA=t;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0265;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95274261 rs2296666 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.69;AMR_AF=0.29;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.3460;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95274338 rs2296667 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.74;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.34;LDAF=0.3771;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95277356 rs34758505 C T 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0221;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95284982 rs10120210 T G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.94;AMR_AF=0.69;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.53;LDAF=0.7108;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 95375468 rs41312236 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0251;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95378353 rs2274413 G A 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.18;AMR_AF=0.42;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.3752;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 95396712 rs2277170 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0256;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95397418 rs1111047 C G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.94;AMR_AF=0.68;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.55;LDAF=0.7372;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 95411725 rs72756427 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0256;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95414828 rs7857502 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.05;AMR_AF=0.34;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3190;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 95480251 rs79574551 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0220;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95482536 rs41273374 G C 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0251;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95609564 rs3739602 C T 100 PASS AA=.;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95738781 rs3802381 C A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.58;AMR_AF=0.68;AN=2;ASN_AF=0.53;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5925;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 95780465 rs7048975 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9977;RSQ=0.9368;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 95782667 rs11790517 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.25;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.28;LDAF=0.3175;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 95838156 rs201944177 G A 100 PASS AA=g;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +9 95840307 rs184778161 C G 100 PASS AA=C;AC=1;AF=0.0037;AMR_AF=0.02;AN=2;AVGPOST=0.9990;ERATE=0.0009;LDAF=0.0041;RSQ=0.8939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 95887320 rs2275848 G T 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.86;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.80;LDAF=0.7961;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 96097747 rs78436873 C T 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.61;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9691;ERATE=0.0096;EUR_AF=0.76;LDAF=0.7044;RSQ=0.9491;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.60,-0.12 +9 96098114 rs200532275 C G 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.48;AMR_AF=0.62;AN=2;ASN_AF=0.48;AVGPOST=0.6955;ERATE=0.0736;EUR_AF=0.58;LDAF=0.5406;RSQ=0.4320;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:1.450:-0.48,-0.48,-0.48 +9 96209943 rs10821128 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.36;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.36;LDAF=0.3149;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 96214928 rs1055710 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=0.9973;ERATE=0.0011;EUR_AF=0.36;LDAF=0.3580;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 96238578 rs10821135 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.67;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 96392371 rs10992813 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.38;LDAF=0.2597;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 96407953 rs35505758 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.0028;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0215;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 96411414 rs16912641 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.10;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0365;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 96415653 rs3750354 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.32;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3693;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 96420390 rs3763605 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.71;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.61;LDAF=0.5968;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.42,-0.21 +9 96422788 rs73523907 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0137;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 96425777 rs7036592 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.30;AMR_AF=0.29;AN=2;ASN_AF=0.30;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3259;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 96436037 rs41276200 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.02;LDAF=0.0095;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 96827123 rs10993039 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.11;LDAF=0.2180;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 96857621 rs61743388 G T 100 PASS AA=.;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +9 96870198 rs61734082 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0019;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 97055376 rs1328305 G A 100 PASS AA=g;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1710;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 97062981 rs12236219 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1657;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 97082699 rs10993163 G A 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9927;ERATE=0.0007;EUR_AF=0.07;LDAF=0.1734;RSQ=0.9829;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.25,-0.36 +9 97209066 rs9409546 T C 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.32;AMR_AF=0.47;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.34;LDAF=0.3515;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 97213843 rs4744347 A T 100 PASS AA=a;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.16;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1212;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 97221434 rs9409765 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.62;AMR_AF=0.64;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 97349666 rs573212 C G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8666;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 97365642 rs9695 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.47;AMR_AF=0.68;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5013;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 97365720 rs1769257 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.85;LDAF=0.9163;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 97369083 rs2297084 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.46;AMR_AF=0.68;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4982;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +9 97369149 rs1769259 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9776;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 97372172 rs3739747 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3593;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 97522829 rs16911681 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0266;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 97822941 rs1888944 T C 100 PASS AA=T;AC=1;AF=0.89;AFR_AF=0.67;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8866;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 98638288 rs690528 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2785;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.38 +9 98669335 rs76831529 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 98691137 rs2274654 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.17;AMR_AF=0.26;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2006;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 99013663 rs408876 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.98;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8805;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 99122481 rs200009581 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +9 99538274 rs142032998 C T 100 PASS AA=c;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0050;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 99699485 rs7866127 G C 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.09;AVGPOST=0.9629;ERATE=0.0010;EUR_AF=0.13;LDAF=0.1178;RSQ=0.8734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.100:-5.00,-0.90,-0.06 +9 100190972 rs10817568 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0439;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100365086 rs3802473 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.1261;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100366973 rs117823806 C T 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100367810 rs1928641 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.1266;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100367813 rs1928642 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.1266;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100380093 rs3750368 T C 100 PASS AA=T;AC=1;AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0425;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100380204 rs3750369 A G 100 PASS AA=A;AC=1;AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100388197 rs2773347 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.77;AMR_AF=0.69;AN=2;ASN_AF=0.49;AVGPOST=0.9974;ERATE=0.0083;EUR_AF=0.68;LDAF=0.6531;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 100405465 rs3763606 T G 100 PASS AA=T;AC=1;AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100410550 rs118098251 T C 100 PASS AA=T;AC=1;AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100420976 rs2297155 G A 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.1266;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 100459578 rs1800975 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.78;AMR_AF=0.68;AN=2;ASN_AF=0.49;AVGPOST=0.9920;ERATE=0.0011;EUR_AF=0.68;LDAF=0.6512;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.67,-0.00 +9 100616583 rs3021523 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.97;AMR_AF=0.81;AN=2;ASN_AF=0.99;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.76;LDAF=0.8739;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 100617021 rs3021526 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.86;AVGPOST=0.9340;ERATE=0.0058;EUR_AF=0.59;LDAF=0.6888;RSQ=0.8900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-0.48,-0.48,-0.48 +9 100672338 rs2282192 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.79;AMR_AF=0.42;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.5498;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 100684719 rs3183928 A C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2953;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.98,-0.00,-5.00 +9 100684757 rs3183927 A G 100 PASS AA=g;AC=1;AF=0.30;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2946;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.03,-0.00,-5.00 +9 100689693 rs1059003 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0791;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 100745902 rs3739672 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.43;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2294;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.39 +9 100819070 rs3199064 T G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.96;AMR_AF=0.53;AN=2;ASN_AF=0.33;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5359;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.73,-0.09 +9 100819192 rs3739670 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.65;AMR_AF=0.21;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2771;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 100823084 rs13049 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.91;AMR_AF=0.60;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5553;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 100971348 rs3739666 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.76;AMR_AF=0.57;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.57;LDAF=0.6055;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 101006443 rs10818669 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.86;AMR_AF=0.59;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6073;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 101052858 rs2304391 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.36;AMR_AF=0.10;AN=2;ASN_AF=0.26;AVGPOST=0.9907;ERATE=0.0045;EUR_AF=0.08;LDAF=0.1955;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-1.94,-0.01,-5.00 +9 101061639 rs970388 C G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2292;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 101304348 rs2184026 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.31;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0016;EUR_AF=0.25;LDAF=0.2933;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 101340301 rs2808536 A C 100 PASS AA=c;AC=1;AF=0.67;AFR_AF=0.96;AMR_AF=0.67;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6705;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 101518677 rs692824 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.0041;AMR_AF=0.14;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1079;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 101533220 rs6415847 C T 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.93;AMR_AF=0.85;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8702;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 101748356 rs2075663 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.80;AMR_AF=0.48;AN=2;ASN_AF=0.59;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.42;LDAF=0.5610;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 101785598 rs7861925 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.26;AMR_AF=0.11;AN=2;ASN_AF=0.32;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.13;LDAF=0.2084;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 101785633 rs7851787 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.26;AMR_AF=0.14;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2199;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 101814626 rs4142986 C G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.97;AMR_AF=0.79;AN=2;ASN_AF=0.92;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.72;LDAF=0.8400;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 101984936 rs170623 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9930;ERATE=0.0007;EUR_AF=0.28;LDAF=0.1562;RSQ=0.9811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-1.18,-0.03,-5.00 +9 102595685 rs10988904 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3296;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 102677502 rs190387629 T A 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 102713580 rs1997368 G A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.74;AMR_AF=0.66;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7093;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 102713591 rs3739794 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.42;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4694;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 103059476 rs7864494 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.78;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7289;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +9 103064530 rs7472 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.54;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.5713;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 103065884 rs3923501 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.74;AMR_AF=0.63;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6645;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 103108941 rs2151131 C G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8642;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 104124664 rs2229594 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.73;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7564;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +9 104133628 rs1572983 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.49;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6170;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 104152790 rs17853010 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.10;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.07;LDAF=0.0623;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 104152846 rs8131 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0613;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 104161450 rs61755098 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=0.9963;ERATE=0.0125;EUR_AF=0.06;LDAF=0.0583;RSQ=0.9715;SNPSOURCE=LOWCOV,EXOME;THETA=0.0097;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 104238142 rs15889 A C 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.37;AMR_AF=0.30;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3035;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 104324545 rs10521057 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1764;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104385711 rs10989563 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9972;ERATE=0.0032;EUR_AF=0.19;LDAF=0.1163;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104385712 rs10989564 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.55;AMR_AF=0.44;AN=2;ASN_AF=0.54;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4897;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104432293 rs1323434 C T 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2861;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104432873 rs942142 T G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2861;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104433034 rs10512285 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2861;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104433235 rs76198691 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2834;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104433436 rs1885980 T A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2861;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104449063 rs2506354 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.86;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7006;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 104449098 rs10989591 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.49;AMR_AF=0.28;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3003;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 104499575 rs1337677 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.85;AMR_AF=0.92;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 105763912 rs10820335 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.24;LDAF=0.1745;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 106896809 rs7872034 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.79;AMR_AF=0.44;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5000;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107266503 rs41277749 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.36;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2341;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107266596 rs7049042 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.89;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.7824;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107266774 rs1949755 C G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.89;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.7824;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107266844 rs1403812 A G 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.89;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.7824;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107266943 rs1403811 G A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.89;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.75;LDAF=0.7825;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107267304 rs7030820 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.56;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.62;LDAF=0.5361;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107298444 rs41305445 C T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.24;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1093;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 107299001 rs41304943 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0896;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 107510145 rs3753024 G C 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.42;AMR_AF=0.59;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5576;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +9 107515214 rs2274870 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.77;AMR_AF=0.69;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6444;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 107526619 rs62565988 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9940;ERATE=0.0005;EUR_AF=0.12;LDAF=0.0724;RSQ=0.9653;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-0.35,-0.41,-0.79 +9 107562804 rs2230808 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.17;AMR_AF=0.71;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.5896;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 107566877 rs2777801 C A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.83;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.88;LDAF=0.9041;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 107578529 rs34788556 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0311;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107579632 rs33918808 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.16;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0507;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 107586753 rs2066714 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.50;AMR_AF=0.21;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.3661;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 107591272 rs2853579 G T 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3538;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 107593182 rs4743763 A T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.85;AMR_AF=0.39;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.5452;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 107651526 rs2275545 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.35;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.14;LDAF=0.1632;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 107665978 rs1800978 C G 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1297;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +9 108147683 rs16924542 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0114;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 108147763 rs3199966 T G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.50;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1581;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.20 +9 108366734 rs34787999 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1947;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 108380355 rs17309806 C A 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2101;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 109689859 rs3814540 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.68;AMR_AF=0.45;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.39;LDAF=0.4836;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 109691676 rs3814538 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.84;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5189;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 110081018 rs1805335 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.56;AMR_AF=0.56;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6115;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 110084328 rs1805329 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1676;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 110086149 rs1805334 G A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.83;AMR_AF=0.69;AN=2;ASN_AF=0.77;AVGPOST=0.9989;ERATE=0.0055;EUR_AF=0.75;LDAF=0.7656;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 110249505 rs2236599 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.27;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1772;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 111617650 rs11543179 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.26;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2197;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 111618163 rs3750468 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2157;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 111618209 rs17728850 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.10;AMR_AF=0.12;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0813;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 111625620 rs7872077 G A 100 PASS AA=g;AC=1;AF=0.07;AFR_AF=0.21;AMR_AF=0.03;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0699;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 111625913 rs4978370 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.82;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8739;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 111653574 rs1063110 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.06;AMR_AF=0.43;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3574;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 111670707 rs838824 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.82;AMR_AF=0.69;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7134;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 111727670 rs7021366 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2267;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 111755008 rs2297581 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2263;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 111795561 rs7866253 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.11;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1275;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 111795565 rs7852550 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.21;AMR_AF=0.10;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1170;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 111800267 rs7029890 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.11;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1267;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 111812825 rs614253 C T 100 PASS AA=c;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9479;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 111835614 rs11792149 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.19;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1147;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 111868885 rs2271878 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2272;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 111881856 rs1051474 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.31;AVGPOST=0.9867;ERATE=0.0012;EUR_AF=0.28;LDAF=0.2308;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-0.17,-0.49,-2.85 +9 111881927 rs6825 T C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.21;AMR_AF=0.39;AN=2;ASN_AF=0.30;AVGPOST=0.9942;ERATE=0.0005;EUR_AF=0.47;LDAF=0.3529;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.900:-0.89,-0.39,-0.33 +9 111882167 rs12001627 G C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.34;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=0.9000;ERATE=0.0091;EUR_AF=0.45;LDAF=0.3701;RSQ=0.8456;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:1.950:-1.38,-0.38,-0.27 +9 111899928 rs10759329 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.55;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6192;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 111945049 rs3750450 T G 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.73;AMR_AF=0.81;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7577;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 112015852 rs115581703 G C 100 PASS AA=G;AC=1;AF=0.0041;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0042;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 112145799 rs2304742 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0612;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 112145864 rs2304743 G A 100 PASS AA=g;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0603;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 112172477 rs2275699 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8629;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 112190884 rs2274785 A G 100 PASS AA=C;AC=2;AF=0.07;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0014;EUR_AF=0.02;LDAF=0.0658;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 112219474 rs3793524 C G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.50;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3793;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 112225531 rs62576448 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.40;AMR_AF=0.26;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2554;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 112629858 rs2769154 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8958;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 112899361 rs4978872 A C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9939;ERATE=0.0007;EUR_AF=0.84;LDAF=0.9172;RSQ=0.9707;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 112900785 rs3739456 A G 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3669;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 112918581 rs7862044 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.87;AMR_AF=0.70;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8048;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 112963504 rs10120707 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9675;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 113006420 rs5843 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.87;AVGPOST=0.9631;ERATE=0.0661;EUR_AF=0.43;LDAF=0.6021;RSQ=0.9551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.10,-0.00 +9 113013606 rs997392 C G 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.24;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0047;EUR_AF=0.02;LDAF=0.0837;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0155;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113100012 rs7026528 T G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.68;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3345;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113132221 rs17204533 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.32;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1705;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113141815 rs992883 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.62;AMR_AF=0.50;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4771;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113148239 rs10817003 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.17;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0548;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113163127 rs16914990 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.05;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0481;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113166697 rs1410049 T A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.80;AMR_AF=0.48;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5715;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113168399 rs199677397 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113169126 rs2281937 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.34;AN=2;ASN_AF=0.11;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2789;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113169630 rs7046213 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.83;AMR_AF=0.47;AN=2;ASN_AF=0.44;AVGPOST=0.9790;ERATE=0.0093;EUR_AF=0.49;LDAF=0.5479;RSQ=0.9735;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113169631 rs7030192 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9786;ERATE=0.0184;EUR_AF=0.28;LDAF=0.3410;RSQ=0.9665;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113192655 rs2986671 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2262;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113213726 rs4421419 A G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.86;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8835;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113220820 rs10980398 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2250;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113228098 rs10980401 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2262;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113233720 rs10980402 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.45;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2353;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113234507 rs10817025 T C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1919;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113243506 rs73655373 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0274;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.00,-5.00 +9 113244624 rs12115783 A G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0274;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113252064 rs73655383 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0274;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113261483 rs872665 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.18;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2537;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 113276356 rs3818764 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1494;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 113547322 rs484010 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9599;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114089882 rs61748723 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0964;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114090279 rs314452 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.33;AMR_AF=0.60;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.63;LDAF=0.5205;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114125835 rs2297524 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.83;AMR_AF=0.66;AN=2;ASN_AF=0.65;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6905;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114125854 rs2297525 T A 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0932;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114152408 rs41316540 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.19;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0933;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114152416 rs41313313 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.12;AN=2;ASN_AF=0.32;AVGPOST=0.9985;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1853;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114174415 rs2418163 T C 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.46;AMR_AF=0.38;AN=2;ASN_AF=0.32;AVGPOST=0.9991;ERATE=0.0010;EUR_AF=0.48;LDAF=0.4196;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114190337 rs16916100 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0928;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114195587 rs2297530 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0956;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114341240 rs74633160 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.22;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.07;LDAF=0.0990;RSQ=0.9943;SNPSOURCE=EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114359624 rs1053959 C A 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.58;AMR_AF=0.59;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5859;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114409550 rs4978455 A G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.40;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3505;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114411945 rs7019332 G T 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.40;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3500;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114423879 rs2273792 G C 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.31;AMR_AF=0.20;AN=2;ASN_AF=0.15;AVGPOST=0.9781;ERATE=0.0005;EUR_AF=0.08;LDAF=0.1704;RSQ=0.9470;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +9 114454544 rs7869279 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.36;AMR_AF=0.58;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5238;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 114454580 rs1475110 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9982;RSQ=0.9668;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114462322 rs6477845 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.83;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8492;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114464487 rs1407390 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.88;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8605;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114468966 rs7036568 A C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.34;AMR_AF=0.22;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2149;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114476748 rs11791445 T A 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1512;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114480602 rs2418174 C A 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.46;AMR_AF=0.65;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6280;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 114484682 rs1337581 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.81;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8419;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114484783 rs12352352 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1518;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114486219 rs12349541 T A 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1518;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114489887 rs953536 C T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.47;AMR_AF=0.65;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6285;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 114490229 rs10512411 T G 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1518;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114490308 rs7470491 T C 100 PASS AA=t;AC=2;AF=0.84;AFR_AF=0.81;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8419;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 114508486 rs193153842 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 114688807 rs72757814 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 114694486 rs7850023 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.37;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3171;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 115060205 rs10981348 C G 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.10;AMR_AF=0.40;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3012;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 115095743 rs7040447 T C 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.93;AMR_AF=0.85;AN=2;ASN_AF=0.73;AVGPOST=0.9973;ERATE=0.0007;EUR_AF=0.80;LDAF=0.8195;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +9 115142507 rs7867831 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9989;RSQ=0.0589;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-3.10,-0.47,-0.18 +9 115421788 rs16917185 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.20;AMR_AF=0.04;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0864;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 115567184 rs1891402 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9546;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 115580008 rs10117709 G C 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.66;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7713;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 115598447 rs6477961 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.61;AMR_AF=0.79;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7582;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 115600848 rs7023478 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9868;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 115651873 rs61741119 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0165;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 115652674 rs113997864 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 115652713 rs7025717 A G 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.18;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0430;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 115652881 rs3802491 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.18;AMR_AF=0.44;AN=2;ASN_AF=0.74;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.33;LDAF=0.4229;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 115920099 rs4344146 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5946;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 115931703 rs3810910 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.32;AMR_AF=0.30;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2899;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 115950141 rs73655816 C T 100 PASS AA=.;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 115950706 rs10435864 A C 100 PASS AA=.;AC=1;AF=0.53;AFR_AF=0.48;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5301;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 115959199 rs7866432 G C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.37;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2007;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 115965227 rs73655842 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9989;ERATE=0.0015;LDAF=0.0184;RSQ=0.9749;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 115968797 rs1133618 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.21;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1846;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 116085423 rs10817479 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0691;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 116136198 rs1043836 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.53;AMR_AF=0.67;AN=2;ASN_AF=0.44;AVGPOST=0.9983;ERATE=0.0008;EUR_AF=0.63;LDAF=0.5638;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 116152990 rs1805312 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0980;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 116153900 rs1139488 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.29;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=0.9972;ERATE=0.0052;EUR_AF=0.38;LDAF=0.3859;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 116346287 rs3810927 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9980;ERATE=0.0018;EUR_AF=0.18;LDAF=0.1816;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 116356373 rs12350531 G C 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.72;AMR_AF=0.74;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.70;LDAF=0.7609;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 116356516 rs12341266 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9967;ERATE=0.0008;EUR_AF=0.88;LDAF=0.9383;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 116356529 rs10817493 C G 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.82;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.73;LDAF=0.8312;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 116798596 rs74541872 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0295;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.25 +9 116811184 rs7852282 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.27;AMR_AF=0.04;AN=2;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0674;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 116857656 rs7036734 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.58;AMR_AF=0.53;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5626;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.10 +9 116858625 rs6478062 T G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.87;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7097;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +9 116859748 rs114942807 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0288;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 116958216 rs2567711 C T 100 PASS AA=c;AC=1;AF=0.68;AFR_AF=0.68;AMR_AF=0.80;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.79;LDAF=0.6854;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 116968603 rs115840417 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0029;LDAF=0.0128;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0162;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 116973273 rs34350265 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.08;LDAF=0.0792;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117002517 rs2014134 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.15;AMR_AF=0.46;AN=2;ASN_AF=0.21;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2982;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117027155 rs111567212 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.15;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0375;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117027709 rs7048607 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.14;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0343;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117033022 rs4143245 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.43;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9991;ERATE=0.0028;EUR_AF=0.42;LDAF=0.4125;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117033096 rs2636866 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.99;AMR_AF=0.83;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7901;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117044751 rs2787330 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.75;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8277;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117050790 rs1631319 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0327;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117050998 rs10982134 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3870;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +9 117051020 rs1687410 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.33;AMR_AF=0.21;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2265;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117051202 rs1687409 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.25;AMR_AF=0.04;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0625;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117051586 rs72762675 C G 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.62;AVGPOST=0.9895;ERATE=0.0069;EUR_AF=0.29;LDAF=0.4140;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117051614 rs1249742 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.35;AMR_AF=0.21;AN=2;ASN_AF=0.30;AVGPOST=0.9983;ERATE=0.0008;EUR_AF=0.15;LDAF=0.2426;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-3.85,-0.00,-5.00 +9 117053215 rs1249738 A G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.58;AMR_AF=0.44;AN=2;ASN_AF=0.62;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4678;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +9 117063685 rs187016046 A C 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117063792 rs187658701 C T 100 PASS AA=C;AC=1;AF=0.0023;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0023;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117064345 rs1546048 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.60;AVGPOST=0.9974;ERATE=0.0134;EUR_AF=0.33;LDAF=0.4282;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0107;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117073006 rs1249756 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.74;AMR_AF=0.65;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6443;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117085526 rs147960186 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.56;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=0.8169;ERATE=0.0399;EUR_AF=0.61;LDAF=0.6151;RSQ=0.6792;SNPSOURCE=EXOME;THETA=0.0079;VT=SNP GT:DS:GL 0|1:0.950:-2.06,-0.00,-3.66 +9 117086035 rs138003853 C T 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.07;AVGPOST=0.9987;ERATE=0.0004;LDAF=0.0225;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.050:-0.48,-0.48,-0.48 +9 117087212 rs10982154 T A 100 PASS AA=t;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.06;LDAF=0.0638;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117087281 rs200915931 C T 100 PASS AA=-;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.02;AN=2;AVGPOST=0.9960;ERATE=0.0007;LDAF=0.0416;RSQ=0.9645;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117092701 rs117654479 C A 100 PASS AA=-;AC=2;AF=0.23;AFR_AF=0.45;AMR_AF=0.16;AN=2;ASN_AF=0.20;AVGPOST=0.9330;ERATE=0.0417;EUR_AF=0.13;LDAF=0.2248;RSQ=0.8812;SNPSOURCE=EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:1.650:-2.87,-0.45,-0.19 +9 117093110 rs2636889 T C 100 PASS AA=-;AC=1;AF=0.08;AFR_AF=0.36;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0841;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117094200 rs1826232 C T 100 PASS AA=T;AC=2;AF=0.13;AFR_AF=0.47;AMR_AF=0.05;AN=2;ASN_AF=0.06;AVGPOST=0.9990;ERATE=0.0016;EUR_AF=0.0013;LDAF=0.1315;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117103838 rs59274247 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.23;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0551;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117103973 rs2250242 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.88;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6133;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117108971 rs902492 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.33;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0951;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117110112 rs1265891 T C 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.68;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.0026;LDAF=0.1818;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +9 117110180 rs10982174 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0299;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.06,-0.86,-5.00 +9 117121840 rs2787348 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8706;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117136479 rs78027042 C T 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0315;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +9 117165599 rs61743618 C T 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0028;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117166311 rs34963246 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.23;AMR_AF=0.11;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1015;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117166338 rs6478078 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117168825 rs35258467 C G 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0028;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117186677 rs4979387 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.80;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9990;ERATE=0.0034;EUR_AF=0.71;LDAF=0.8136;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117188566 rs10817610 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117266965 rs2297815 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.17;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.41;LDAF=0.2737;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117552885 rs3810936 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.89;AMR_AF=0.72;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6938;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117555785 rs7852290 G A 100 PASS AA=G;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0009;RSQ=0.9499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +9 117568049 rs7030574 C A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.24;AMR_AF=0.42;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3161;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117668142 rs3181195 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.47;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3340;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117692344 rs3181357 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.64;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.2386;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117804544 rs1061495 T C 100 PASS AA=t;AC=1;AF=0.29;AFR_AF=0.53;AMR_AF=0.26;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2852;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117836188 rs2210108 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.93;AMR_AF=0.71;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7344;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117844239 rs2989519 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.69;AMR_AF=0.50;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4643;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117846450 rs1755639 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.63;AMR_AF=0.61;AN=2;ASN_AF=0.40;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5379;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117846570 rs2274836 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.41;AMR_AF=0.39;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4693;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 117846580 rs1061494 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4442;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117848112 rs1617917 A T 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.34;AMR_AF=0.36;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3186;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117848394 rs1757095 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9495;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 117849314 rs2992147 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.58;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4442;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 117853022 rs944510 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.58;AMR_AF=0.50;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4410;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 118163563 rs2269700 C T 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.88;AMR_AF=0.61;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7441;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 118163577 rs147129385 G C 100 PASS AA=G;AC=1;AF=0.0032;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0032;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +9 118950208 rs80284365 G T 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.15;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0361;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 119107024 rs56187073 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0576;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 119109537 rs3761844 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.35;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0891;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 119187839 rs7518 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2234;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 119495697 rs7863560 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9935;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 119582872 rs3765537 T G 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7600;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 119770480 rs3761845 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.15;AMR_AF=0.65;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5396;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 119770551 rs7036098 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9735;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 120053776 rs7848630 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9694;RSQ=0.9785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 121930388 rs35224314 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0271;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +9 121971245 rs7862457 G T 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0430;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 122001000 rs2274157 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.16;AMR_AF=0.46;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4497;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 123152099 rs2297457 C G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.71;AMR_AF=0.77;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0013;EUR_AF=0.72;LDAF=0.7475;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 123156761 rs4410972 G C 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.57;AMR_AF=0.75;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7112;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 123170733 rs4837768 C G 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.60;AMR_AF=0.84;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.76;LDAF=0.7591;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 123280950 rs2095064 T C 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.66;AMR_AF=0.89;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0017;EUR_AF=0.94;LDAF=0.8138;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 123291036 rs4836822 C G 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.71;AMR_AF=0.90;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8217;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 123342259 rs932975 C A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9821;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.72,-0.00 +9 123342275 rs932974 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9744;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.87,-0.01 +9 123550027 rs7026635 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=0.55;AVGPOST=0.9957;ERATE=0.0008;EUR_AF=0.75;LDAF=0.7267;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 123583192 rs1060817 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.22;AMR_AF=0.63;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.59;LDAF=0.4786;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 123586737 rs10760117 T G 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.22;AMR_AF=0.62;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4785;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 123631642 rs3753029 G C 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.22;AMR_AF=0.65;AN=2;ASN_AF=0.48;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.62;LDAF=0.4985;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 123632045 rs1056567 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.55;AMR_AF=0.76;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.69;LDAF=0.6143;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 123632829 rs4836833 G C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.55;AMR_AF=0.76;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6133;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 123671520 rs2239657 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6956;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 123676482 rs2416805 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6947;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 123731408 rs10985112 G A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.48;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.07;LDAF=0.1554;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 123850770 rs10818503 G A 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.27;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6358;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 123888242 rs10760150 G T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.60;AMR_AF=0.79;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7678;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 123908345 rs7023214 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.27;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6363;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 123928486 rs2273988 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.26;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6348;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 123929770 rs61745682 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1407;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 124065224 rs2230287 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0763;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 124088768 rs306769 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.89;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8931;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +9 124091135 rs306771 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.84;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8647;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 124093762 rs2289070 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.14;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1023;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.09,-0.00,-5.00 +9 124094800 rs9102 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.14;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1024;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 124111628 rs3747847 A C 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0800;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 124522544 rs34334373 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0120;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 124751361 rs41277110 A C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.20;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0713;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 124855211 rs61742319 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.37;AMR_AF=0.30;AN=2;ASN_AF=0.05;AVGPOST=0.9915;ERATE=0.0006;EUR_AF=0.30;LDAF=0.2537;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.69,-0.10 +9 124929080 rs73551372 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.24;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0562;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 124929211 rs1411444 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.58;AMR_AF=0.40;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3706;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 125133479 rs1236913 T C 100 PASS AA=c;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9616;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125143792 rs5788 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.65;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2436;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125145743 rs3842798 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.71;AMR_AF=0.28;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2984;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125282393 rs1318392 C T 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.72;AMR_AF=0.54;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5530;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125289083 rs16911867 A G 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.34;AMR_AF=0.35;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3723;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125289521 rs10818708 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.79;AMR_AF=0.56;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6672;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125315418 rs1411270 G C 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.37;AMR_AF=0.37;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3583;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125315542 rs1831369 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.37;AMR_AF=0.37;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3583;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125315557 rs1831370 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5489;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125315778 rs1411271 G C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5503;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125316033 rs1341042 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125316042 rs1341043 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125316179 rs1341044 T G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.85;AMR_AF=0.76;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125316350 rs1411272 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.59;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.54;LDAF=0.5818;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125316455 rs7039436 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.30;AMR_AF=0.37;AN=2;ASN_AF=0.82;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.24;LDAF=0.4268;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125330125 rs10739614 C G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7377;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125330184 rs10985702 A C 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.44;AMR_AF=0.40;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.32;LDAF=0.4973;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125330325 rs10985703 C G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.32;AMR_AF=0.38;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4401;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125330678 rs10985704 T G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.60;AMR_AF=0.63;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6805;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125330739 rs1999182 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.47;AMR_AF=0.62;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6499;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125377087 rs972925 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.63;AMR_AF=0.81;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.82;LDAF=0.8086;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125377176 rs187659423 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0120;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 125377505 rs1329957 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.72;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125377734 rs727913 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1239;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 125390874 rs1556189 A C 100 PASS AA=c;AC=2;AF=0.81;AFR_AF=0.64;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8058;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125391026 rs1476858 A C 100 PASS AA=c;AC=2;AF=0.75;AFR_AF=0.45;AMR_AF=0.74;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7477;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125391127 rs1476859 C T 100 PASS AA=t;AC=1;AF=0.40;AFR_AF=0.09;AMR_AF=0.43;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3991;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 125391241 rs1476860 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.08;AMR_AF=0.41;AN=2;ASN_AF=0.57;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3329;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 125391369 rs1536929 A G 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.43;AMR_AF=0.60;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6330;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125391409 rs1536928 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.33;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4127;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125437725 rs16912096 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.19;AMR_AF=0.02;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125437769 rs16912099 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.39;AMR_AF=0.03;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.1147;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125438244 rs74634130 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.16;AMR_AF=0.02;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0622;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125438378 rs79636164 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.17;AMR_AF=0.02;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0636;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125438392 rs57989094 T A 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.30;AMR_AF=0.02;AN=2;ASN_AF=0.05;AVGPOST=0.9935;ERATE=0.0192;EUR_AF=0.02;LDAF=0.0947;RSQ=0.9743;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +9 125486968 rs2215530 G A 100 PASS AA=.;AC=1;AF=0.85;AFR_AF=0.63;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=0.9887;ERATE=0.0144;EUR_AF=0.91;LDAF=0.8488;RSQ=0.9681;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 125652757 rs10818759 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.43;AMR_AF=0.32;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.11;LDAF=0.3626;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 125659520 rs2793005 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9818;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 125673051 rs1147321 T G 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.42;AMR_AF=0.65;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.5699;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125761059 rs28416273 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.32;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0832;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 125861741 rs2302590 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1984;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 126118600 rs12551047 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.19;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0990;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-0.71,-0.26,-0.59 +9 126125318 rs2808415 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9970;RSQ=0.9302;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 126128654 rs4838052 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.18;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.02;LDAF=0.1138;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-0.01,-1.66,-5.00 +9 126133547 rs2488602 T C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9964;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 126135715 rs2488601 A G 100 PASS AA=.;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9899;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9747;RSQ=0.8510;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +9 126135831 rs7848449 T C 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=0.9941;ERATE=0.0007;EUR_AF=0.09;LDAF=0.1175;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|0:1.050:-0.48,-0.48,-0.48 +9 126135936 rs2488600 G C 100 PASS AA=.;AC=1;AF=0.19;AFR_AF=0.35;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=0.9727;ERATE=0.0023;EUR_AF=0.18;LDAF=0.1942;RSQ=0.9327;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.37 +9 126136247 rs2488599 A G 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.68;AMR_AF=0.33;AN=2;ASN_AF=0.38;AVGPOST=0.9738;ERATE=0.0051;EUR_AF=0.30;LDAF=0.4106;RSQ=0.9598;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +9 126143662 rs3739837 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.24;AN=2;ASN_AF=0.28;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2043;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.04,-1.04 +9 126144746 rs2491348 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9851;RSQ=0.9656;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 126144758 rs2808409 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 126145907 rs2797946 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 126146197 rs2808411 C G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.81;AMR_AF=0.88;AN=2;ASN_AF=0.96;AVGPOST=0.9963;ERATE=0.0035;EUR_AF=0.92;LDAF=0.8997;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 126220114 rs61736953 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0513;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 126439100 rs12377595 T G 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.26;LDAF=0.1815;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 126520068 rs9785285 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.69;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0011;EUR_AF=0.19;LDAF=0.2943;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 127083725 rs10760352 C T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.57;AMR_AF=0.48;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5278;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 127101924 rs10760354 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9383;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 127177161 rs4574 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.59;AMR_AF=0.40;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3986;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 127177736 rs2236386 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.22;AMR_AF=0.44;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3980;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 127255448 rs2297605 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.20;AMR_AF=0.59;AN=2;ASN_AF=0.51;AVGPOST=0.9952;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4253;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 127262802 rs1110061 C G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.79;AMR_AF=0.09;AN=2;ASN_AF=0.28;AVGPOST=0.9941;ERATE=0.0005;EUR_AF=0.01;LDAF=0.2719;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.22 +9 127561559 rs2281923 C T 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.46;AMR_AF=0.76;AN=2;ASN_AF=0.68;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6432;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 127566378 rs7874348 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.87;AMR_AF=0.79;AN=2;ASN_AF=0.89;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7758;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 127572700 rs73669209 C A 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.24;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0576;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 127572710 rs7020260 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9814;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 127616537 rs12375547 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.46;AMR_AF=0.36;AN=2;ASN_AF=0.60;AVGPOST=0.9962;ERATE=0.0056;EUR_AF=0.40;LDAF=0.4597;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 127618776 rs2274970 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.97;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9055;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 127618839 rs10760381 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9870;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +9 127619922 rs944952 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.97;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9028;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 127637215 rs581558 T G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.89;AMR_AF=0.97;AN=2;ASN_AF=0.79;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9133;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 127643456 rs687434 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.24;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.38;LDAF=0.3318;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 127644882 rs596231 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 127652621 rs622280 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3327;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 127661645 rs634710 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.30;AMR_AF=0.36;AN=2;ASN_AF=0.59;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4211;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-1.66,-0.01,-3.70 +9 127674200 rs583134 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9885;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 127733926 rs2289631 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.69;AMR_AF=0.66;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6404;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 127757310 rs6478690 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.77;AMR_AF=0.67;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6606;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 127781259 rs1017530 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.34;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2263;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 128074807 rs432757 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9715;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 128246786 rs2070113 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1732;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 129102840 rs1888156 G A 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.38;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.29;LDAF=0.3146;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 129143315 rs62766561 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.79;AMR_AF=0.56;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 129143435 rs2286889 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.0041;AMR_AF=0.12;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1220;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 129595667 rs80025775 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.1170;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 129595895 rs3118994 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.85;AMR_AF=0.73;AN=2;ASN_AF=0.97;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.76;LDAF=0.8292;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 129831659 rs1281158 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130094526 rs10987596 T G 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1915;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130155331 rs7864853 A G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5000;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130164818 rs3802367 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.55;AMR_AF=0.77;AN=2;ASN_AF=0.74;AVGPOST=0.9829;ERATE=0.0020;EUR_AF=0.82;LDAF=0.7293;RSQ=0.9683;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.88,-0.06 +9 130164993 rs1138739 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.26;LDAF=0.2143;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.74 +9 130166382 rs10819287 C G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.89;AMR_AF=0.96;AN=2;ASN_AF=0.81;AVGPOST=0.9935;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9041;RSQ=0.9729;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +9 130166383 rs11788710 G T 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.33;AN=2;ASN_AF=0.29;AVGPOST=0.9942;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2506;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130167061 rs114827209 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9986;ERATE=0.0002;LDAF=0.0080;RSQ=0.9352;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130191186 rs13292096 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.61;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.5718;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130197414 rs4504745 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.62;AMR_AF=0.61;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.64;LDAF=0.5736;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130206669 rs2298182 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1476;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130206762 rs2248025 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.33;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.3583;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130210111 rs1139400 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.62;AMR_AF=0.64;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.67;LDAF=0.5872;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130213110 rs2247310 G C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.55;AMR_AF=0.61;AN=2;ASN_AF=0.35;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5411;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +9 130219669 rs2243906 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.61;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.64;LDAF=0.5701;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130221388 rs2243767 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.61;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.64;LDAF=0.5702;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +9 130241822 rs1539569 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.63;AMR_AF=0.76;AN=2;ASN_AF=0.69;AVGPOST=0.9921;ERATE=0.0019;EUR_AF=0.81;LDAF=0.7299;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +9 130242070 rs143901401 G A 100 PASS AA=G;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0042;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130242166 rs1539567 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.64;AMR_AF=0.77;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7353;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130259618 rs2248822 A C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.64;AMR_AF=0.76;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7317;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130259656 rs3802358 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1498;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130265014 rs10987671 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1383;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130265163 rs34768188 C T 100 PASS AA=C;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0042;RSQ=0.9744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130270189 rs61732274 G A 100 PASS AA=G;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0042;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130270683 rs2277194 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1507;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130270686 rs3824524 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9980;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1509;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130270834 rs113843607 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.01;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0283;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130272417 rs11788951 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1280;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130286150 rs2251409 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.61;AMR_AF=0.67;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.69;LDAF=0.5829;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130289615 rs2243558 C G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.69;LDAF=0.5908;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130341253 rs4240420 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.85;AN=2;ASN_AF=0.74;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8391;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130475011 rs522328 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.90;AMR_AF=0.61;AN=2;ASN_AF=0.38;AVGPOST=0.9983;ERATE=0.0008;EUR_AF=0.61;LDAF=0.6151;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130485618 rs537881 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.63;AMR_AF=0.57;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5242;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130486384 rs836333 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.30;AVGPOST=0.9954;ERATE=0.0029;EUR_AF=0.60;LDAF=0.5215;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130488494 rs538927 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5861;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130489558 rs472144 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5910;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130493513 rs482095 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.78;AMR_AF=0.61;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.63;LDAF=0.5927;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130493724 rs505268 C T 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.31;AVGPOST=0.9952;ERATE=0.0031;EUR_AF=0.63;LDAF=0.5292;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130494486 rs114990094 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0180;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130494811 rs515182 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.88;AMR_AF=0.61;AN=2;ASN_AF=0.38;AVGPOST=0.9936;ERATE=0.0015;EUR_AF=0.65;LDAF=0.6209;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130494957 rs538066 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9926;RSQ=0.9236;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +9 130495633 rs564754 C G 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5995;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130497591 rs7848592 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.22;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=0.9954;ERATE=0.0007;EUR_AF=0.03;LDAF=0.0821;RSQ=0.9764;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-2.30,-0.01,-1.75 +9 130509439 rs2233505 A G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0284;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130536717 rs10760500 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5531;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130565267 rs10760502 A G 100 PASS AA=g;AC=2;AF=0.76;AFR_AF=0.88;AMR_AF=0.59;AN=2;ASN_AF=0.95;AVGPOST=0.9663;ERATE=0.0021;EUR_AF=0.63;LDAF=0.7555;RSQ=0.9360;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:1.900:-2.98,-0.46,-0.18 +9 130566539 rs7856096 A G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.17;AMR_AF=0.01;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130572123 rs7027767 A G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.43;AMR_AF=0.43;AN=2;ASN_AF=0.66;AVGPOST=0.9087;ERATE=0.0032;EUR_AF=0.37;LDAF=0.4578;RSQ=0.8657;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:1.850:-0.89,-0.39,-0.33 +9 130630639 rs913986 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +9 130649111 rs4837202 G A 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9803;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +9 130670652 rs1043012 A G 100 PASS AA=G;AC=1;AF=0.95;AFR_AF=0.78;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9451;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130670903 rs10760511 C A 100 PASS AA=C;AC=1;AF=0.94;AFR_AF=0.78;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9446;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130672221 rs10739700 C T 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.61;AMR_AF=0.88;AN=2;ASN_AF=0.79;AVGPOST=0.9963;ERATE=0.0027;EUR_AF=0.93;LDAF=0.8143;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130690412 rs10760515 G C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.72;AMR_AF=0.88;AN=2;ASN_AF=0.61;AVGPOST=0.9852;ERATE=0.0020;EUR_AF=0.92;LDAF=0.7850;RSQ=0.9679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +9 130698029 rs7997 G C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.68;AMR_AF=0.84;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7061;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130698043 rs6781 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.69;AMR_AF=0.86;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7623;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130707081 rs2274426 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.72;AMR_AF=0.84;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7162;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130710726 rs4837212 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.76;AMR_AF=0.91;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8208;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130715922 rs2417062 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.85;AMR_AF=0.94;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8528;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130854127 rs10739712 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9305;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130860866 rs947624 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9675;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130861039 rs947623 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.71;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9231;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130864676 rs7859709 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130868831 rs1418420 T C 100 PASS AA=c;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9675;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130869499 rs4837239 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9985;RSQ=0.9107;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130883511 rs2040004 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.73;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9387;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130889705 rs4837244 G A 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9608;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +9 130914170 rs11794980 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.15;AMR_AF=0.74;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5021;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130914434 rs2232629 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.98;LDAF=0.9565;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 130939930 rs12334 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0147;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130942972 rs45585631 T C 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.43;AMR_AF=0.76;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7098;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130980937 rs2229917 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.22;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0868;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 130982416 rs3003606 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.11;AMR_AF=0.59;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4785;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130984430 rs3003608 C A 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.45;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5736;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 130984755 rs3003609 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.08;AMR_AF=0.59;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4699;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131001692 rs10987942 G C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.74;AMR_AF=0.27;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.4080;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131019323 rs148499646 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0073;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131072058 rs34262454 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131088076 rs2270203 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.08;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1262;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131095112 rs7850697 A C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.70;AMR_AF=0.22;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3441;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131110892 rs2240953 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1168;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131186401 rs7038316 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.52;AMR_AF=0.18;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3134;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131186581 rs2286813 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.68;AMR_AF=0.20;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3531;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131186783 rs61732491 C T 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0403;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131186856 rs34878035 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0389;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131191041 rs11554802 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0389;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131193519 rs3174220 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.21;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131193605 rs1009851 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.52;AMR_AF=0.17;AN=2;ASN_AF=0.40;AVGPOST=0.9986;ERATE=0.0031;EUR_AF=0.19;LDAF=0.3171;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131196334 rs2072398 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.62;AMR_AF=0.18;AN=2;ASN_AF=0.41;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3526;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131196336 rs2072397 T A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.62;AMR_AF=0.18;AN=2;ASN_AF=0.41;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3526;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131196695 rs7258 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.35;AMR_AF=0.16;AN=2;ASN_AF=0.39;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.22;LDAF=0.2819;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131196704 rs7259 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.63;AMR_AF=0.19;AN=2;ASN_AF=0.39;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.22;LDAF=0.3497;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131197896 rs7040989 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.42;AMR_AF=0.18;AN=2;ASN_AF=0.39;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3123;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131235163 rs113174868 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0238;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131235321 rs4512487 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131247176 rs4075146 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.42;AVGPOST=0.9933;ERATE=0.0028;EUR_AF=0.25;LDAF=0.3352;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131247626 rs3924786 T A 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.45;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3080;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131337661 rs2297769 A C 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9653;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131340535 rs113357847 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131344034 rs7040737 T A 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0224;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131346218 rs10760566 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9767;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131346710 rs34084388 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0283;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131347165 rs4836615 G A 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9764;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131347169 rs4837284 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.35;AMR_AF=0.81;AN=2;ASN_AF=0.50;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.88;LDAF=0.6502;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131356538 rs2227865 G A 100 PASS AA=g;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0224;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131360750 rs2227864 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.44;AMR_AF=0.82;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.88;LDAF=0.6715;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131374165 rs7024498 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131375701 rs1415568 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131379967 rs2227862 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.34;AMR_AF=0.81;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.6476;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131379998 rs3750333 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0375;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131380225 rs7864187 A C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.46;AMR_AF=0.17;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2929;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131388643 rs3737308 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.33;AMR_AF=0.81;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0020;EUR_AF=0.88;LDAF=0.6476;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131392553 rs7866175 G A 100 PASS AA=G;AC=1;AF=0.93;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9319;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131396018 rs13581 A C 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=0.9990;ERATE=0.0004;LDAF=0.0222;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131397479 rs4837291 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.38;AMR_AF=0.81;AN=2;ASN_AF=0.48;AVGPOST=0.9970;ERATE=0.0031;EUR_AF=0.87;LDAF=0.6463;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.17 +9 131398518 rs73623567 G C 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.02;AN=2;AVGPOST=0.9991;ERATE=0.0003;LDAF=0.0332;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.28 +9 131398540 rs78387565 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=0.9989;ERATE=0.0004;LDAF=0.0277;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +9 131398636 rs10760570 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.31;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.87;LDAF=0.6335;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131403096 rs2298045 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.71;AMR_AF=0.85;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7555;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131419025 rs115636627 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.02;AN=2;AVGPOST=0.9976;ERATE=0.0004;LDAF=0.0299;RSQ=0.9638;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.12,-0.63,-4.40 +9 131454120 rs3750330 C T 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.58;AMR_AF=0.96;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8675;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131454935 rs77639733 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0206;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131455903 rs4836618 C T 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.58;AMR_AF=0.96;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8674;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131467782 rs55665019 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.35;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.0040;LDAF=0.0897;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-0.39,-0.23,-5.00 +9 131475737 rs116278677 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0207;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131475951 rs4837297 T C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9908;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131477544 rs7854055 G A 100 PASS AA=A;AC=1;AF=0.88;AFR_AF=0.63;AMR_AF=0.96;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8821;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131479023 rs10739729 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9909;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131482467 rs3750325 T C 100 PASS AA=T;AC=1;AF=0.85;AFR_AF=0.57;AMR_AF=0.92;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8477;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131483551 rs11539209 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0462;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131483749 rs2900268 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9982;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +9 131495681 rs7848023 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.25;AMR_AF=0.03;AN=2;AVGPOST=0.9996;ERATE=0.0008;LDAF=0.0610;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131502440 rs3818931 G C 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.67;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9062;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131515148 rs12341940 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.29;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0709;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131550722 rs1891076 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9444;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131553768 rs10760577 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131565554 rs1572912 T C 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.88;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4241;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131570183 rs7862546 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131585994 rs2997918 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9976;RSQ=0.9191;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.45,-0.02 +9 131586374 rs7033070 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.51;AMR_AF=0.21;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2884;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131588652 rs2997914 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131588813 rs6478853 C G 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.61;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3142;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131588888 rs6478854 G C 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.75;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3974;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131670457 rs3750320 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.42;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9985;ERATE=0.0103;EUR_AF=0.18;LDAF=0.2396;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131670919 rs3750319 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.27;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9957;ERATE=0.0025;EUR_AF=0.75;LDAF=0.6147;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +9 131689361 rs751340 G A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.48;AMR_AF=0.42;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3789;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131702891 rs2273866 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.40;AMR_AF=0.41;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3609;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131735559 rs17452428 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.39;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2734;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131745548 rs719703 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.39;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.41;LDAF=0.2925;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131749113 rs61744524 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0105;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131761437 rs2004632 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.39;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2802;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131761899 rs2302811 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.39;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2930;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131767668 rs2287363 A C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.54;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=0.9994;ERATE=0.0018;EUR_AF=0.47;LDAF=0.4670;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131771505 rs1129098 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.38;AN=2;ASN_AF=0.15;AVGPOST=0.9884;ERATE=0.0056;EUR_AF=0.42;LDAF=0.2715;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-3.80,-0.02,-1.31 +9 131772389 rs3750340 T G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.68;AVGPOST=0.9858;ERATE=0.0158;EUR_AF=0.84;LDAF=0.8093;RSQ=0.9674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131772500 rs13440035 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9900;ERATE=0.0061;LDAF=0.0175;RSQ=0.7783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:0.750:-2.33,-0.00,-5.00 +9 131846957 rs11541836 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.06;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.63;LDAF=0.3890;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131848382 rs7859344 T A 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.30;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.74;LDAF=0.5882;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131857630 rs2229419 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.52;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3647;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131860465 rs200041803 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.0013;LDAF=0.0015;RSQ=0.9134;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131860901 rs3118635 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131862781 rs10988204 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9976;ERATE=0.0040;EUR_AF=0.70;LDAF=0.5429;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131866523 rs2228304 C G 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.37;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1255;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131866609 rs17508668 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.22;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0535;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 131882761 rs9409311 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131897221 rs7019373 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.32;AMR_AF=0.61;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5819;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 131898880 rs1536548 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 131899846 rs3118631 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9976;RSQ=0.9573;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +9 131904850 rs3904184 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.39;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0933;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132375536 rs201110691 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0006;RSQ=0.6978;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +9 132377728 rs918166 C T 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9823;ERATE=0.0151;EUR_AF=0.43;LDAF=0.5113;RSQ=0.9743;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132377900 rs918165 C T 100 PASS AA=N;AC=2;AF=0.53;AFR_AF=0.72;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5316;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132401824 rs2302780 G A 100 PASS AA=A;AC=1;AF=0.95;AFR_AF=0.95;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.97;LDAF=0.9475;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 132402908 rs2241247 C G 100 PASS AA=C;AC=1;AF=0.94;AFR_AF=0.89;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9355;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 132404304 rs4837396 C G 100 PASS AA=G;AC=1;AF=0.97;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9646;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 132569442 rs2302820 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2503;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132569532 rs16936946 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0109;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132585058 rs2296793 G A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2372;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132590431 rs732074 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2369;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132591509 rs3818553 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2363;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132595685 rs45507500 C G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2340;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132596031 rs2274507 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1774;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132597021 rs3814547 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2340;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132618578 rs4836674 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8962;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132620364 rs10819568 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8961;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132620707 rs2134601 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8961;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132623293 rs1503375 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.74;AMR_AF=0.88;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8838;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132623868 rs10115249 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8961;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132623917 rs10124224 C A 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8962;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132625417 rs4837419 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.54;AMR_AF=0.75;AN=2;ASN_AF=0.84;AVGPOST=0.9437;ERATE=0.0212;EUR_AF=0.74;LDAF=0.7109;RSQ=0.9157;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.42,-0.02 +9 132625418 rs4836676 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.55;AMR_AF=0.77;AN=2;ASN_AF=0.88;AVGPOST=0.9534;ERATE=0.0046;EUR_AF=0.77;LDAF=0.7426;RSQ=0.9223;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +9 132625602 rs2900279 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8951;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.16,-0.03 +9 132631680 rs6478920 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.75;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8982;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132635944 rs2296787 C G 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.67;AMR_AF=0.88;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8673;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132636031 rs4332226 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.66;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9924;ERATE=0.0005;EUR_AF=0.92;LDAF=0.8748;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132636033 rs4415421 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.67;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9931;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8759;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132637712 rs735115 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.9947;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2518;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 132640726 rs2296788 T G 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.05;AMR_AF=0.27;AN=2;ASN_AF=0.20;AVGPOST=0.9929;ERATE=0.0005;EUR_AF=0.41;LDAF=0.2514;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-0.54,-0.15,-5.00 +9 132662786 rs1023000 C T 100 PASS AA=c;AC=1;AF=0.61;AFR_AF=0.63;AMR_AF=0.60;AN=2;ASN_AF=0.76;AVGPOST=0.9879;ERATE=0.0015;EUR_AF=0.49;LDAF=0.6093;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 132678195 rs7867211 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.66;AMR_AF=0.87;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8243;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 132686186 rs4836680 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.7976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 132935037 rs181147470 C A 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=0.9971;ERATE=0.0009;EUR_AF=0.05;LDAF=0.0515;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.12,-0.00,-3.62 +9 132981990 rs4836698 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.08;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0192;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 132988709 rs2277200 T G 100 PASS AA=g;AC=2;AF=0.34;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.17;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.31;LDAF=0.3399;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133346171 rs150202505 C G 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133346920 rs652313 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.59;AMR_AF=0.86;AN=2;ASN_AF=0.96;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.85;LDAF=0.8245;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133355744 rs151042066 G T 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0011;LDAF=0.0046;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133355874 rs1215940 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.69;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9232;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +9 133553993 rs7021384 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.47;AVGPOST=0.9989;ERATE=0.0033;EUR_AF=0.32;LDAF=0.3795;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133554065 rs7030674 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.47;AMR_AF=0.42;AN=2;ASN_AF=0.48;AVGPOST=0.9981;ERATE=0.0040;EUR_AF=0.33;LDAF=0.4125;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133710804 rs7866590 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9902;ERATE=0.0008;EUR_AF=0.98;LDAF=0.9890;RSQ=0.6658;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.96,-0.05 +9 133761001 rs1056171 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.88;AMR_AF=0.63;AN=2;ASN_AF=0.59;AVGPOST=0.9962;ERATE=0.0012;EUR_AF=0.48;LDAF=0.6247;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133779730 rs12552821 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2517;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133779756 rs11244186 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.28;AMR_AF=0.29;AN=2;ASN_AF=0.39;AVGPOST=0.9988;ERATE=0.0012;EUR_AF=0.22;LDAF=0.2874;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133787225 rs6597650 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.82;AMR_AF=0.51;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5777;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133884820 rs3739512 T G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.75;AMR_AF=0.55;AN=2;ASN_AF=0.85;AVGPOST=0.9689;ERATE=0.0025;EUR_AF=0.45;LDAF=0.6326;RSQ=0.9536;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.30,-0.01,-1.73 +9 133911598 rs2275132 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.95;AMR_AF=0.84;AN=2;ASN_AF=0.82;AVGPOST=0.9878;ERATE=0.0044;EUR_AF=0.81;LDAF=0.8491;RSQ=0.9604;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133911706 rs2275131 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.20;AMR_AF=0.49;AN=2;ASN_AF=0.64;AVGPOST=0.9853;ERATE=0.0012;EUR_AF=0.48;LDAF=0.4588;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133914570 rs2293518 G A 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.14;AVGPOST=0.9961;ERATE=0.0007;EUR_AF=0.22;LDAF=0.1820;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0168;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 133936381 rs3824398 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.37;AMR_AF=0.60;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5436;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133936571 rs3739510 C G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.97;AMR_AF=0.73;AN=2;ASN_AF=0.54;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.82;LDAF=0.7659;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +9 133942624 rs3765569 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.53;AMR_AF=0.70;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6938;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133946909 rs10901344 G A 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2924;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133946915 rs10901345 C G 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2929;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133948049 rs2275140 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.57;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7043;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0090;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +9 133962853 rs4740411 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1723;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133963008 rs4740412 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1710;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133963101 rs4740413 A G 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.30;AMR_AF=0.39;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3676;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133986980 rs353526 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 133987060 rs353525 G A 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 134020092 rs103612 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.63;AMR_AF=0.74;AN=2;ASN_AF=0.63;AVGPOST=0.9984;ERATE=0.0230;EUR_AF=0.68;LDAF=0.6651;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 134136515 rs352952 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.79;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9383;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 134136677 rs352951 A G 100 PASS AA=a;AC=2;AF=0.94;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9393;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 134165368 rs7029366 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.23;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.39;LDAF=0.3728;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.47 +9 134183379 rs2966332 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.42;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6497;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 134183503 rs2986606 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.44;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0014;EUR_AF=0.73;LDAF=0.6535;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +9 134323240 rs2994064 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9838;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 134334588 rs34553878 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0580;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134346315 rs4310250 T C 100 PASS AA=T;AC=1;AF=0.86;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=0.9957;ERATE=0.0100;EUR_AF=0.93;LDAF=0.8568;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134349152 rs7850251 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9839;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +9 134350231 rs17458486 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0572;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +9 134350323 rs10736851 C G 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.54;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7606;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134350458 rs10751478 C T 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.53;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.77;LDAF=0.7590;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134350647 rs10793873 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +9 134351065 rs7858488 G T 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.70;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.93;LDAF=0.8684;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134351343 rs11243403 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.37;AN=2;ASN_AF=0.11;AVGPOST=0.9952;ERATE=0.0004;EUR_AF=0.55;LDAF=0.3632;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134351500 rs113338693 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0567;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 134353093 rs45451696 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0933;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 134354794 rs45501698 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0932;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 134358108 rs2275498 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0937;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.38,-0.00,-5.00 +9 134361581 rs10793875 T A 100 PASS AA=A;AC=1;AF=0.87;AFR_AF=0.72;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8739;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134371165 rs41296113 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.05;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0648;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 134384277 rs11243404 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.71;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8711;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134385436 rs2296949 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.70;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9973;ERATE=0.0014;EUR_AF=0.94;LDAF=0.8656;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134385599 rs2018621 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.71;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8706;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-3.80,-0.00,-5.00 +9 134386675 rs4740163 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 134386744 rs10901065 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.71;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8707;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134386781 rs4740164 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 134386903 rs10901066 G A 100 PASS AA=A;AC=1;AF=0.87;AFR_AF=0.71;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134387488 rs3739494 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.71;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8706;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134395628 rs2277152 C G 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.59;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8340;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134397394 rs187443595 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0102;RSQ=0.9751;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 134397624 rs4740165 C T 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.59;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8340;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134398534 rs3739495 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.71;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8692;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134401335 rs2296957 C T 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.52;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.94;LDAF=0.8236;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134406071 rs7867616 C G 100 PASS AA=c;AC=2;AF=0.85;AFR_AF=0.69;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0009;EUR_AF=0.84;LDAF=0.8536;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 134458109 rs3765545 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1321;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134465398 rs3818581 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8413;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 134467456 rs2296951 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.31;AMR_AF=0.13;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1618;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134514011 rs41317002 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0708;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 134952790 rs4440729 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9838;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 135073309 rs11243663 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.27;AMR_AF=0.32;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.44;LDAF=0.3939;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 135073315 rs11243664 C G 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.30;AMR_AF=0.32;AN=2;ASN_AF=0.48;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4024;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 135073877 rs3824574 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.21;AMR_AF=0.22;AN=2;ASN_AF=0.38;AVGPOST=0.9979;ERATE=0.0018;EUR_AF=0.33;LDAF=0.3001;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 135102254 rs2149171 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.42;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.62;LDAF=0.5586;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135105964 rs4962173 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9981;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.58,-0.00 +9 135202829 rs543573 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.77;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.5868;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 135203231 rs1183768 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.77;AN=2;ASN_AF=0.33;AVGPOST=0.9986;ERATE=0.0009;EUR_AF=0.86;LDAF=0.5855;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 135203409 rs1185193 A C 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.59;AMR_AF=0.80;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.6576;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 135206460 rs9411449 A G 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.57;AMR_AF=0.78;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6485;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 135263573 rs556386 G T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.66;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9067;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 135273507 rs569288 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.51;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7377;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135273607 rs504525 C G 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.52;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=0.9984;ERATE=0.0024;EUR_AF=0.86;LDAF=0.7399;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135374898 rs562350 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.81;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9997;ERATE=0.0024;EUR_AF=0.50;LDAF=0.6659;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 135601354 rs396819 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.79;AMR_AF=0.72;AN=2;ASN_AF=0.55;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6536;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +9 135730257 rs17407084 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0187;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135753629 rs2231400 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.31;AMR_AF=0.06;AN=2;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0960;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0109;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135777121 rs11243931 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.36;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1729;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135781563 rs10901220 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.24;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1423;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135782221 rs7862221 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.23;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1412;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135786112 rs6597586 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.23;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1362;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135786904 rs1073123 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.24;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1380;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135862632 rs633153 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.31;AMR_AF=0.56;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0015;EUR_AF=0.62;LDAF=0.4742;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 135945800 rs138715663 C T 100 PASS AA=C;AC=2;AF=0.03;AFR_AF=0.0020;AMR_AF=0.05;AN=2;AVGPOST=0.9948;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0295;RSQ=0.9335;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.49,-0.01 +9 135974079 rs1062356 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.85;AMR_AF=0.84;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8186;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 135974100 rs886017 G A 100 PASS AA=g;AC=1;AF=0.47;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4677;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135978153 rs694881 G C 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.84;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7342;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.01,-1.49 +9 135979751 rs598499 C G 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.74;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.71;LDAF=0.7385;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 135982088 rs2073822 A C 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.33;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2350;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 135983504 rs2285375 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.42;AMR_AF=0.38;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3034;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 135985796 rs3761824 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2263;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136031346 rs2073927 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.55;AN=2;ASN_AF=0.57;AVGPOST=0.9979;ERATE=0.0030;EUR_AF=0.53;LDAF=0.5980;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136081829 rs11244037 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.23;AN=2;AVGPOST=0.9953;ERATE=0.0014;EUR_AF=0.22;LDAF=0.1257;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136083580 rs2073870 T G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.59;AMR_AF=0.81;AN=2;ASN_AF=0.61;AVGPOST=0.9232;ERATE=0.0455;EUR_AF=0.79;LDAF=0.6877;RSQ=0.8727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.900:-0.88,-0.39,-0.33 +9 136199466 rs886089 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2674;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136199503 rs886090 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.37;LDAF=0.2705;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136201470 rs563666 C A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136213521 rs616836 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.85;AMR_AF=0.64;AN=2;ASN_AF=0.73;AVGPOST=0.9874;ERATE=0.0074;EUR_AF=0.58;LDAF=0.6879;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136227260 rs12763 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6928;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136234124 rs1179033 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136260696 rs41306714 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.41;LDAF=0.2782;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136268038 rs3124748 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.38;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9903;ERATE=0.0286;EUR_AF=0.43;LDAF=0.4256;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136268084 rs3124747 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.36;AMR_AF=0.54;AN=2;ASN_AF=0.27;AVGPOST=0.9909;ERATE=0.0236;EUR_AF=0.71;LDAF=0.4892;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.900:-0.06,-0.90,-5.00 +9 136270538 rs41302673 T G 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0484;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136277480 rs2285486 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.87;AMR_AF=0.64;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7079;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136291063 rs3118667 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.51;AMR_AF=0.56;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6024;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136298729 rs739469 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5270;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136301982 rs2301612 C G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2745;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +9 136304497 rs3124768 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5270;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136305439 rs2073932 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.38;AMR_AF=0.49;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5247;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136308542 rs3124767 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.34;AMR_AF=0.49;AN=2;ASN_AF=0.80;AVGPOST=0.9839;ERATE=0.0062;EUR_AF=0.39;LDAF=0.5032;RSQ=0.9771;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.700:-0.01,-1.67,-5.00 +9 136320444 rs61751476 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9991;ERATE=0.0003;LDAF=0.0151;RSQ=0.9751;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136324239 rs1055432 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.19;AVGPOST=0.9916;ERATE=0.0100;EUR_AF=0.35;LDAF=0.2403;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136325160 rs2301614 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.18;AVGPOST=0.9964;ERATE=0.0008;EUR_AF=0.34;LDAF=0.2311;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-2.60,-0.06,-0.89 +9 136328657 rs3124765 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.71;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8482;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136340200 rs2073935 T G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.48;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9915;ERATE=0.0007;EUR_AF=0.71;LDAF=0.7262;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +9 136403562 rs13283227 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.15;AN=2;ASN_AF=0.0017;AVGPOST=0.9931;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1275;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136405965 rs28504582 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9953;ERATE=0.0004;EUR_AF=0.16;LDAF=0.0896;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136409580 rs9802778 T G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7573;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136412170 rs2073874 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7473;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136412236 rs2073875 A T 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7482;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136412255 rs2073876 A C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7481;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136412296 rs2073877 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1180;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136412346 rs2073878 C T 100 PASS AA=c;AC=2;AF=0.74;AFR_AF=0.75;AMR_AF=0.74;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.91;LDAF=0.7422;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136412382 rs2073879 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7477;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136505114 rs1108580 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.66;AMR_AF=0.42;AN=2;ASN_AF=0.14;AVGPOST=0.9954;ERATE=0.0109;EUR_AF=0.53;LDAF=0.4373;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 136505146 rs13306308 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0157;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136505155 rs3025391 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.05;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0201;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136507577 rs5322 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136509312 rs1611125 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.60;AMR_AF=0.43;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4322;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136509370 rs4531 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.13;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0631;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136509451 rs1611127 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0639;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136518097 rs77905 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.91;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.53;LDAF=0.6453;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0091;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136522274 rs6271 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.07;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0326;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136535677 rs10993958 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.07;AN=2;AVGPOST=0.9938;ERATE=0.0006;EUR_AF=0.06;LDAF=0.0349;RSQ=0.9270;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-3.40 +9 136536633 rs2797840 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.71;AMR_AF=0.59;AN=2;ASN_AF=0.79;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.48;LDAF=0.6295;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136536679 rs129932 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.65;AMR_AF=0.57;AN=2;ASN_AF=0.76;AVGPOST=0.9979;ERATE=0.0014;EUR_AF=0.46;LDAF=0.5975;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136536793 rs2519123 C G 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.72;AMR_AF=0.59;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6323;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +9 136555629 rs886016 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.82;AMR_AF=0.48;AN=2;ASN_AF=0.44;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.45;LDAF=0.5335;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136559460 rs2073817 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9942;ERATE=0.0011;EUR_AF=0.44;LDAF=0.3915;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.58 +9 136561303 rs2502739 A T 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.62;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.87;LDAF=0.8322;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136594864 rs2427988 A G 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.57;AMR_AF=0.92;AN=2;ASN_AF=0.86;AVGPOST=0.9977;ERATE=0.0016;EUR_AF=0.90;LDAF=0.8178;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136599315 rs2488553 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.29;AMR_AF=0.74;AN=2;ASN_AF=0.71;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.81;LDAF=0.6562;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.15 +9 136637198 rs653967 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.03;AVGPOST=0.9956;ERATE=0.0078;EUR_AF=0.38;LDAF=0.2514;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136641235 rs667183 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.40;AMR_AF=0.28;AN=2;ASN_AF=0.02;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2966;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136643908 rs56233098 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0707;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136643994 rs602990 T C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.84;AMR_AF=0.48;AN=2;ASN_AF=0.03;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4611;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136645079 rs540626 G C 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2224;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136648606 rs1468128 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.39;AMR_AF=0.69;AN=2;ASN_AF=0.96;AVGPOST=0.9739;ERATE=0.0231;EUR_AF=0.65;LDAF=0.6774;RSQ=0.9616;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136654366 rs45607334 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0801;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136654497 rs2072059 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.39;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4129;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136662928 rs7865299 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.48;AMR_AF=0.25;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2199;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136672493 rs2510246 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.60;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9950;ERATE=0.0006;EUR_AF=0.27;LDAF=0.3446;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:0.950:-0.94,-0.05,-5.00 +9 136804211 rs2073886 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.61;AMR_AF=0.72;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7258;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 136907108 rs467317 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.51;AMR_AF=0.37;AN=2;ASN_AF=0.73;AVGPOST=0.9942;ERATE=0.0006;EUR_AF=0.39;LDAF=0.5040;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-1.43,-0.02,-5.00 +9 136913355 rs464826 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.80;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=0.9852;ERATE=0.0085;EUR_AF=0.68;LDAF=0.6776;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 136918350 rs71505268 G A 100 PASS AA=G;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0042;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 136918555 rs13297632 G T 100 PASS AA=G;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0041;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137005023 rs11556390 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.18;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3515;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137293761 rs2234753 G A 100 PASS AA=g;AC=1;AF=0.78;AFR_AF=0.91;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9633;ERATE=0.0101;EUR_AF=0.76;LDAF=0.7735;RSQ=0.9205;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.87 +9 137299949 rs1805352 C A 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.27;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.70;LDAF=0.5931;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137328286 rs1805343 G A 100 PASS AA=g;AC=1;AF=0.54;AFR_AF=0.22;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5411;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137619195 rs3124299 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.06;AMR_AF=0.55;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3762;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137620474 rs3124302 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.21;AMR_AF=0.60;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.46;LDAF=0.4337;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137622033 rs3124308 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.21;AMR_AF=0.60;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4345;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137622039 rs3128598 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.60;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4349;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137623555 rs3109675 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.22;AMR_AF=0.63;AN=2;ASN_AF=0.49;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4516;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-1.71,-0.01,-5.00 +9 137630568 rs3109677 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.79;AMR_AF=0.34;AN=2;ASN_AF=0.49;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5413;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137630587 rs3128612 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.79;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5419;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137655607 rs41298367 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0179;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137672012 rs3124932 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.12;AMR_AF=0.47;AN=2;ASN_AF=0.07;AVGPOST=0.9972;ERATE=0.0010;EUR_AF=0.49;LDAF=0.2956;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137686906 rs4072883 C T 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.83;AMR_AF=0.56;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6827;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137688657 rs3811159 A G 100 PASS AA=a;AC=1;AF=0.53;AFR_AF=0.50;AMR_AF=0.45;AN=2;ASN_AF=0.74;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5285;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137690318 rs4240707 A T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.49;AMR_AF=0.48;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5566;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137702200 rs3827850 G C 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.52;AMR_AF=0.44;AN=2;ASN_AF=0.43;AVGPOST=0.9910;ERATE=0.0039;EUR_AF=0.44;LDAF=0.4574;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137707834 rs3827848 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1321;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137708934 rs10858282 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.18;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.36;LDAF=0.2976;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137708960 rs10776910 A C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.65;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4570;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137708973 rs10858283 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.65;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4570;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137709683 rs77176843 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0194;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137711997 rs3811146 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.50;AMR_AF=0.33;AN=2;ASN_AF=0.37;AVGPOST=0.9981;ERATE=0.0054;EUR_AF=0.37;LDAF=0.3911;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137714027 rs9697186 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.91;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.54;LDAF=0.6027;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137717610 rs7868111 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7163;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137772664 rs17514136 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.24;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1949;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137772792 rs3128627 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9720;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 137775212 rs7037264 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.64;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0015;EUR_AF=0.40;LDAF=0.5088;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 137777788 rs12684723 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.19;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.10;LDAF=0.1484;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137779026 rs17549193 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.39;AMR_AF=0.26;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2414;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 137779091 rs7851696 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.19;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137779306 rs4521835 T G 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.67;AMR_AF=0.41;AN=2;ASN_AF=0.34;AVGPOST=0.9979;ERATE=0.0010;EUR_AF=0.41;LDAF=0.4523;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 137801800 rs1071583 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.92;AMR_AF=0.47;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6367;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 137804360 rs2274845 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.90;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6247;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +9 137804830 rs2070622 G C 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.89;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.63;LDAF=0.6220;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.52,-0.50,-0.16 +9 137809685 rs10858293 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2665;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 137982127 rs500461 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.89;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7877;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 137998745 rs144025462 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0101;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.93,-0.05 +9 138376649 rs3748192 T C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.25;AMR_AF=0.44;AN=2;ASN_AF=0.69;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.21;LDAF=0.3808;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138376972 rs3928777 A G 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.25;AMR_AF=0.44;AN=2;ASN_AF=0.67;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.21;LDAF=0.3772;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138377657 rs1808998 T C 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.34;AMR_AF=0.45;AN=2;ASN_AF=0.73;AVGPOST=0.9993;ERATE=0.0017;EUR_AF=0.21;LDAF=0.4152;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.00,-0.00 +9 138377738 rs61729479 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0210;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 138377853 rs2004074 A G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.29;AMR_AF=0.44;AN=2;ASN_AF=0.70;AVGPOST=0.9990;ERATE=0.0009;EUR_AF=0.21;LDAF=0.3926;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138377915 rs3748195 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.0020;AMR_AF=0.13;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.01;LDAF=0.1534;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 138378856 rs2078266 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.80;AVGPOST=0.9961;ERATE=0.0005;EUR_AF=0.84;LDAF=0.8770;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138379002 rs1975518 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9968;RSQ=0.7105;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 138379059 rs3748198 G T 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.47;AVGPOST=0.9932;ERATE=0.0032;EUR_AF=0.04;LDAF=0.1825;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138387483 rs2274650 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.37;AMR_AF=0.46;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.42;LDAF=0.5210;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138391517 rs2274651 A C 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.47;AN=2;ASN_AF=0.84;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.44;LDAF=0.5313;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.04,-0.04 +9 138439005 rs504061 A C 100 PASS AA=t;AC=1;AF=0.83;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=0.9910;ERATE=0.0008;EUR_AF=0.72;LDAF=0.8288;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.100:-5.00,-1.18,-0.03 +9 138440525 rs2590500 C G 100 PASS AA=c;AC=1;AF=0.44;AFR_AF=0.24;AMR_AF=0.50;AN=2;ASN_AF=0.66;AVGPOST=0.9865;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4385;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 138440641 rs2853652 T C 100 PASS AA=c;AC=1;AF=0.84;AFR_AF=0.85;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=0.9957;ERATE=0.0030;EUR_AF=0.73;LDAF=0.8430;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 138516531 rs7466817 G C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.71;AMR_AF=0.74;AN=2;ASN_AF=0.81;AVGPOST=0.9898;ERATE=0.0009;EUR_AF=0.63;LDAF=0.7178;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 138518010 rs1333240 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9748;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138523332 rs1333234 C A 100 PASS AA=c;AC=2;AF=0.81;AFR_AF=0.77;AMR_AF=0.81;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8102;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138586198 rs572335 G A 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.61;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8720;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +9 138586309 rs484524 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.61;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8762;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138586854 rs3118655 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.66;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.94;LDAF=0.8861;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +9 138586966 rs3119932 G A 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.68;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9855;ERATE=0.0005;EUR_AF=0.94;LDAF=0.8821;RSQ=0.9529;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.53,-0.01 +9 138586967 rs3119933 C A 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.67;AMR_AF=0.91;AN=2;ASN_AF=0.96;AVGPOST=0.9532;ERATE=0.0085;EUR_AF=0.92;LDAF=0.8609;RSQ=0.8640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.46,-0.00 +9 138589311 rs7036532 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.26;AMR_AF=0.37;AN=2;ASN_AF=0.09;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.48;LDAF=0.3100;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 138590138 rs506498 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.72;AMR_AF=0.92;AN=2;ASN_AF=0.97;AVGPOST=0.9750;ERATE=0.0090;EUR_AF=0.94;LDAF=0.8897;RSQ=0.9151;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138590347 rs529976 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.64;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8794;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138590928 rs471525 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.74;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8106;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.91,-0.01 +9 138591230 rs558113 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.74;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8108;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.49,-0.00 +9 138591266 rs559326 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.74;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8155;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +9 138707727 rs913342 C G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.88;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.80;LDAF=0.8621;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138837113 rs10776856 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.51;AMR_AF=0.56;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.57;LDAF=0.5311;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.55 +9 138838140 rs7028495 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138903671 rs9626 A G 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.56;AVGPOST=0.9861;ERATE=0.0011;EUR_AF=0.70;LDAF=0.6780;RSQ=0.9746;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +9 138904997 rs2280485 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.73;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9941;ERATE=0.0011;EUR_AF=0.42;LDAF=0.5007;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.55,-0.01 +9 138905136 rs2280486 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.56;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4636;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 138908250 rs2275107 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1758;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139094773 rs2274115 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.76;AMR_AF=0.74;AN=2;ASN_AF=0.50;AVGPOST=0.9557;ERATE=0.0010;EUR_AF=0.66;LDAF=0.6560;RSQ=0.9292;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +9 139094805 rs2274116 C T 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.05;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=0.9643;ERATE=0.0033;EUR_AF=0.31;LDAF=0.1898;RSQ=0.9134;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +9 139096898 rs10858245 T G 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=0.9882;ERATE=0.0011;EUR_AF=0.18;LDAF=0.1989;RSQ=0.9701;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.35,-0.01,-1.66 +9 139100805 rs9696116 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1745;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139110654 rs12684650 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.13;AVGPOST=0.9989;ERATE=0.0039;EUR_AF=0.29;LDAF=0.1734;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139116666 rs78475959 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.07;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0337;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139230585 rs28583929 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.52;AMR_AF=0.52;AN=2;ASN_AF=0.23;AVGPOST=0.9911;ERATE=0.0024;EUR_AF=0.46;LDAF=0.4200;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139235415 rs60980157 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.23;AN=2;ASN_AF=0.07;AVGPOST=0.9914;ERATE=0.0006;EUR_AF=0.23;LDAF=0.1944;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-2.28,-0.01,-2.09 +9 139252495 rs3812547 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.78;AMR_AF=0.62;AN=2;ASN_AF=0.92;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.68;LDAF=0.7527;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139264888 rs114895119 T A 100 PASS AA=T;AC=1;AF=0.0032;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0033;RSQ=0.9614;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.80 +9 139273402 rs3812567 C T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9967;ERATE=0.0034;EUR_AF=0.67;LDAF=0.7884;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139276407 rs34569521 C T 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0422;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +9 139276430 rs34850728 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.0017;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.18;LDAF=0.0881;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.95 +9 139289747 rs201492253 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139298593 rs1051957 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.20;AVGPOST=0.9932;ERATE=0.0015;EUR_AF=0.40;LDAF=0.3457;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139391636 rs2229974 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.64;AMR_AF=0.66;AN=2;ASN_AF=0.93;AVGPOST=0.9910;ERATE=0.0006;EUR_AF=0.58;LDAF=0.6974;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139393307 rs9632944 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9977;ERATE=0.0021;EUR_AF=0.10;LDAF=0.0892;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139396408 rs3124594 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.92;AMR_AF=0.64;AN=2;ASN_AF=0.89;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.53;LDAF=0.7314;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139396983 rs12344155 A G 100 PASS AA=a;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=0.10;LDAF=0.0830;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.15,-0.48,-0.18 +9 139397707 rs10521 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.58;AMR_AF=0.51;AN=2;ASN_AF=0.88;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.40;LDAF=0.5844;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139402663 rs3124597 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.96;AMR_AF=0.67;AN=2;ASN_AF=0.88;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.57;LDAF=0.7560;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139403280 rs11145765 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=0.9956;ERATE=0.0005;EUR_AF=0.10;LDAF=0.0590;RSQ=0.9656;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.76,-0.00,-2.42 +9 139403554 rs3124598 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.95;AMR_AF=0.67;AN=2;ASN_AF=0.88;AVGPOST=0.9925;ERATE=0.0013;EUR_AF=0.57;LDAF=0.7530;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.71,-0.01 +9 139405093 rs36119806 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9958;ERATE=0.0008;EUR_AF=0.11;LDAF=0.0922;RSQ=0.9811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139405261 rs3125001 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.71;AMR_AF=0.51;AN=2;ASN_AF=0.85;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.42;LDAF=0.6141;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139407452 rs3812608 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.88;AMR_AF=0.63;AN=2;ASN_AF=0.84;AVGPOST=0.9922;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6997;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +9 139410424 rs3125006 A G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.91;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9818;ERATE=0.0037;EUR_AF=0.87;LDAF=0.9000;RSQ=0.9244;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139412197 rs9411208 G A 100 PASS AA=g;AC=2;AF=0.69;AFR_AF=0.77;AMR_AF=0.60;AN=2;ASN_AF=0.93;AVGPOST=0.9949;ERATE=0.0005;EUR_AF=0.49;LDAF=0.6877;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139413908 rs2229975 C T 100 PASS AA=C;AC=2;AF=0.10;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.07;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1008;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139418260 rs4489420 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.94;AMR_AF=0.59;AN=2;ASN_AF=0.84;AVGPOST=0.9934;ERATE=0.0008;EUR_AF=0.51;LDAF=0.7055;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139563144 rs2297535 C A 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.15;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1688;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139564668 rs2297538 G A 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.24;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1866;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139616742 rs945384 A G 100 PASS AA=a;AC=2;AF=0.88;AFR_AF=0.55;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.96;LDAF=0.8787;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +9 139617379 rs11793962 G A 100 PASS AA=g;AC=2;AF=0.31;AFR_AF=0.37;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3117;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +9 139617626 rs7038042 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.35;AMR_AF=0.30;AN=2;ASN_AF=0.16;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=0.24;LDAF=0.2538;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139617662 rs11849 T C 100 PASS AA=t;AC=2;AF=0.32;AFR_AF=0.41;AMR_AF=0.39;AN=2;ASN_AF=0.16;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=0.35;LDAF=0.3209;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +9 139617836 rs6874 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.08;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.11;LDAF=0.0609;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139649580 rs879467 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.30;AMR_AF=0.58;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5873;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139652338 rs9411272 C G 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.32;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.67;LDAF=0.5907;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139656618 rs2484658 T C 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9984;RSQ=0.4105;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +9 139656670 rs2297722 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.65;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9948;ERATE=0.0010;EUR_AF=0.76;LDAF=0.7682;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.53,-0.01,-5.00 +9 139656706 rs2297723 A C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.65;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7698;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139657834 rs9987876 G C 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.57;AMR_AF=0.77;AN=2;ASN_AF=0.88;AVGPOST=0.9861;ERATE=0.0067;EUR_AF=0.75;LDAF=0.7445;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139686357 rs2784042 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.71;AMR_AF=0.54;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.48;LDAF=0.4748;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139690840 rs1055995 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.22;AMR_AF=0.67;AN=2;ASN_AF=0.81;AVGPOST=0.9799;ERATE=0.0124;EUR_AF=0.62;LDAF=0.5855;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139700605 rs2811795 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.98;AMR_AF=0.74;AN=2;ASN_AF=0.85;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.81;LDAF=0.8461;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +9 139701108 rs2254143 A C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.81;AMR_AF=0.73;AN=2;ASN_AF=0.85;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.81;LDAF=0.8046;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139701983 rs3739944 C G 100 PASS AA=-;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9864;ERATE=0.0013;EUR_AF=0.81;LDAF=0.8416;RSQ=0.9613;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.70,-0.10 +9 139726239 rs2811748 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.85;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=0.9699;ERATE=0.0222;EUR_AF=0.91;LDAF=0.8158;RSQ=0.9236;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139732331 rs2811741 G C 100 PASS AA=.;AC=2;AF=0.81;AFR_AF=0.78;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=0.9896;ERATE=0.0005;EUR_AF=0.82;LDAF=0.8087;RSQ=0.9726;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.65,-0.11 +9 139732462 rs2811740 C T 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.01;AVGPOST=0.9481;ERATE=0.0014;EUR_AF=0.21;LDAF=0.1272;RSQ=0.8252;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:0.800:-0.19,-0.45,-2.29 +9 139749067 rs7869864 C T 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.87;AMR_AF=0.60;AN=2;ASN_AF=0.88;AVGPOST=0.9933;ERATE=0.0005;EUR_AF=0.76;LDAF=0.7888;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.75,-0.00 +9 139750061 rs138811323 G A 100 PASS AA=.;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0093;RSQ=0.9138;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.22 +9 139752899 rs2275156 T G 100 PASS AA=.;AC=2;AF=0.71;AFR_AF=0.73;AMR_AF=0.55;AN=2;ASN_AF=0.82;AVGPOST=0.9486;ERATE=0.0362;EUR_AF=0.68;LDAF=0.7041;RSQ=0.9103;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139804346 rs4448378 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.81;AMR_AF=0.59;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7708;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139837990 rs2271872 G C 100 PASS AA=g;AC=1;AF=0.62;AFR_AF=0.66;AMR_AF=0.46;AN=2;ASN_AF=0.81;AVGPOST=0.9883;ERATE=0.0063;EUR_AF=0.53;LDAF=0.6194;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +9 139839947 rs7034646 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1155;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.17,-0.50,-2.89 +9 139840471 rs7862602 G T 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.65;AMR_AF=0.45;AN=2;ASN_AF=0.81;AVGPOST=0.9811;ERATE=0.0062;EUR_AF=0.53;LDAF=0.6107;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139840521 rs41307442 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1157;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +9 139840543 rs7850844 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9564;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +9 139840560 rs17613 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1157;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139840580 rs20574 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1164;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139841212 rs41309980 T C 100 PASS AA=t;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1140;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139847500 rs34635210 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.16;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9932;ERATE=0.0006;EUR_AF=0.15;LDAF=0.1165;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139848273 rs2271869 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.64;AMR_AF=0.40;AN=2;ASN_AF=0.82;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5740;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139848278 rs2271868 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.68;AMR_AF=0.41;AN=2;ASN_AF=0.82;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.43;LDAF=0.5843;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139848688 rs4880175 C T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.82;AMR_AF=0.60;AN=2;ASN_AF=0.85;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.69;LDAF=0.7468;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +9 139872048 rs4880179 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9528;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +9 139879170 rs17578859 G A 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.17;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2471;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139887042 rs10870159 G C 100 PASS AA=g;AC=1;AF=0.67;AFR_AF=0.59;AMR_AF=0.57;AN=2;ASN_AF=0.83;AVGPOST=0.9778;ERATE=0.0015;EUR_AF=0.66;LDAF=0.6727;RSQ=0.9611;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.46,-0.47,-0.50 +9 139889844 rs4880183 T G 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.04;LDAF=0.0256;RSQ=0.9759;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139904037 rs7048567 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=0.67;LDAF=0.6942;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139906359 rs2271862 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.61;AMR_AF=0.56;AN=2;ASN_AF=0.82;AVGPOST=0.9886;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6753;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139906513 rs2271863 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9863;ERATE=0.0022;EUR_AF=0.68;LDAF=0.6927;RSQ=0.9753;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139906686 rs45540434 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.27;AMR_AF=0.35;AN=2;ASN_AF=0.55;AVGPOST=0.8741;ERATE=0.0098;EUR_AF=0.36;LDAF=0.3921;RSQ=0.8063;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.950:-1.75,-0.01,-5.00 +9 139908265 rs10781531 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=0.95;LDAF=0.9505;RSQ=0.9636;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.09,-0.04 +9 139910648 rs6560657 T C 100 PASS AA=N;AC=2;AF=0.96;AFR_AF=0.93;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9938;ERATE=0.0005;EUR_AF=0.96;LDAF=0.9620;RSQ=0.9387;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139912178 rs879854 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.65;AMR_AF=0.60;AN=2;ASN_AF=0.77;AVGPOST=0.9586;ERATE=0.0009;EUR_AF=0.60;LDAF=0.6530;RSQ=0.9313;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.86,-0.00 +9 139912484 rs908832 A G 100 PASS AA=g;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9917;ERATE=0.0013;EUR_AF=0.96;LDAF=0.9592;RSQ=0.9172;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139913239 rs908828 T G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9998;RSQ=0.0640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139926402 rs7469569 T C 100 PASS AA=c;AC=2;AF=0.63;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.72;AVGPOST=0.9884;ERATE=0.0200;EUR_AF=0.60;LDAF=0.6349;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139943429 rs7873815 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.54;AMR_AF=0.39;AN=2;ASN_AF=0.52;AVGPOST=0.9728;ERATE=0.0013;EUR_AF=0.32;LDAF=0.4341;RSQ=0.9546;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.47,-0.19,-1.71 +9 139943549 rs7390981 G A 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.75;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=0.9734;ERATE=0.0025;EUR_AF=0.88;LDAF=0.8512;RSQ=0.9235;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.48 +9 139946804 rs2271867 C G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8944;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139973582 rs75127829 C G 100 PASS AA=C;AC=1;AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0375;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139973629 rs7390710 A C 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.25;AMR_AF=0.58;AN=2;ASN_AF=0.44;AVGPOST=0.9822;ERATE=0.0041;EUR_AF=0.67;LDAF=0.5033;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 139973820 rs7037849 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.44;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4845;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139975108 rs9314874 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9959;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 139977195 rs4390039 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9658;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +9 139981627 rs968733 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.65;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9174;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.03 +9 139990813 rs61744585 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0256;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 139994102 rs4880200 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=0.9816;ERATE=0.0149;EUR_AF=0.72;LDAF=0.7164;RSQ=0.9666;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 140002989 rs4880091 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.98;AMR_AF=0.78;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.75;LDAF=0.7939;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 140006202 rs13631 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.50;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.39;LDAF=0.5147;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 140006425 rs10747048 C G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.87;AMR_AF=0.77;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0019;EUR_AF=0.75;LDAF=0.7665;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 140008750 rs10747049 G C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.98;AMR_AF=0.78;AN=2;ASN_AF=0.71;AVGPOST=0.9767;ERATE=0.0012;EUR_AF=0.75;LDAF=0.7976;RSQ=0.9483;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 140008899 rs10870183 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.40;AMR_AF=0.44;AN=2;ASN_AF=0.59;AVGPOST=0.9120;ERATE=0.0085;EUR_AF=0.29;LDAF=0.4290;RSQ=0.8729;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.100:-5.00,-0.03,-1.17 +9 140040156 rs10870196 G A 100 PASS AA=g;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=0.9952;ERATE=0.0005;EUR_AF=0.95;LDAF=0.9479;RSQ=0.9614;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +9 140055876 rs10747050 G A 100 PASS AA=-;AC=2;AF=0.96;AFR_AF=0.97;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9602;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +9 140064219 rs12000091 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.24;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=0.7949;ERATE=0.0190;EUR_AF=0.16;LDAF=0.2338;RSQ=0.5471;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.250:-3.11,-0.47,-0.18 +9 140076346 rs58384967 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.33;AVGPOST=0.9891;ERATE=0.0008;EUR_AF=0.05;LDAF=0.1470;RSQ=0.9705;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 140100224 rs7032361 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9850;ERATE=0.0008;EUR_AF=0.37;LDAF=0.3377;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 140100317 rs113809617 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.20;AVGPOST=0.9935;ERATE=0.0006;EUR_AF=0.15;LDAF=0.1448;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 140108857 rs73563696 T C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.11;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1467;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 140110274 rs7390663 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.95;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9040;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 140128085 rs28407527 T C 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.43;AMR_AF=0.61;AN=2;ASN_AF=0.48;AVGPOST=0.9929;ERATE=0.0007;EUR_AF=0.41;LDAF=0.4655;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 140130606 rs28542318 A T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9882;ERATE=0.0005;EUR_AF=0.83;LDAF=0.9275;RSQ=0.9369;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 140130882 rs28591989 A C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.35;AMR_AF=0.35;AN=2;ASN_AF=0.15;AVGPOST=0.9360;ERATE=0.0223;EUR_AF=0.34;LDAF=0.2996;RSQ=0.8903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.08 +9 140139757 rs9775264 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9962;RSQ=0.9594;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 140147152 rs28376526 C G 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.51;AMR_AF=0.77;AN=2;ASN_AF=0.46;AVGPOST=0.9718;ERATE=0.0034;EUR_AF=0.71;LDAF=0.6058;RSQ=0.9579;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.84,-0.07 +9 140157460 rs13296455 T C 100 PASS AA=t;AC=2;AF=0.69;AFR_AF=0.59;AMR_AF=0.79;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6864;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +9 140157701 rs56368095 C T 100 PASS AA=N;AC=2;AF=0.63;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.47;AVGPOST=0.9990;ERATE=0.0012;EUR_AF=0.74;LDAF=0.6285;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 140158650 rs9695897 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.48;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.74;LDAF=0.6302;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +9 140167022 rs3204123 G A 100 PASS AA=g;AC=2;AF=0.63;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.73;LDAF=0.6296;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +9 140196400 rs113579584 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9882;ERATE=0.0013;EUR_AF=0.06;LDAF=0.1057;RSQ=0.9503;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.77,-0.08 +9 140242726 rs58941960 C T 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.31;AN=2;ASN_AF=0.05;AVGPOST=0.9923;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1330;RSQ=0.9758;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.94,-0.05,-5.00 +9 140243844 rs28545754 C T 100 PASS AA=c;AC=1;AF=0.57;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.84;AVGPOST=0.9920;ERATE=0.0005;EUR_AF=0.62;LDAF=0.5684;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +9 140243968 rs79140116 C T 100 PASS AA=t;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.29;AN=2;ASN_AF=0.05;AVGPOST=0.9936;ERATE=0.0006;EUR_AF=0.16;LDAF=0.1306;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +9 140247076 rs141126990 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.12;AN=2;AVGPOST=0.9910;ERATE=0.0009;EUR_AF=0.0013;LDAF=0.0233;RSQ=0.8702;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.67,-0.10 +9 140247143 rs7020732 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.96;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.88;LDAF=0.9261;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +9 140249253 rs57429875 A C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.77;AMR_AF=0.78;AN=2;ASN_AF=0.84;AVGPOST=0.9551;ERATE=0.0016;EUR_AF=0.77;LDAF=0.7784;RSQ=0.9057;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.20,-0.00 +9 140250818 rs7389423 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.92;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0013;EUR_AF=0.88;LDAF=0.9202;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +9 140262426 rs11533158 C T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.52;AMR_AF=0.72;AN=2;ASN_AF=0.86;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.67;LDAF=0.6943;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 140277794 rs80074261 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.07;AMR_AF=0.06;AN=2;ASN_AF=0.11;AVGPOST=0.9840;ERATE=0.0034;EUR_AF=0.08;LDAF=0.0838;RSQ=0.9172;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.78,-0.08 +9 140277826 rs13291830 C T 100 PASS AA=N;AC=1;AF=0.55;AFR_AF=0.76;AMR_AF=0.46;AN=2;ASN_AF=0.36;AVGPOST=0.9826;ERATE=0.0026;EUR_AF=0.60;LDAF=0.5491;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-3.52,-0.50,-0.16 +9 140317979 rs117554356 G T 100 PASS AA=g;AC=1;AF=0.15;AFR_AF=0.25;AMR_AF=0.32;AN=2;ASN_AF=0.01;AVGPOST=0.9709;ERATE=0.0019;EUR_AF=0.12;LDAF=0.1536;RSQ=0.9199;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.12 +9 140322640 rs28553346 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.16;AMR_AF=0.37;AN=2;ASN_AF=0.59;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3576;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.41 +9 140323373 rs77546115 C A 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.01;LDAF=0.0198;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.10,-0.01,-2.41 +9 140328077 rs35138580 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.37;AN=2;ASN_AF=0.59;AVGPOST=0.9931;ERATE=0.0013;EUR_AF=0.30;LDAF=0.3916;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.90 +9 140329618 rs28589413 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.32;AMR_AF=0.39;AN=2;ASN_AF=0.01;AVGPOST=0.9933;ERATE=0.0008;EUR_AF=0.24;LDAF=0.2211;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +9 140330976 rs13297080 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=0.93;LDAF=0.9422;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.05,-0.04 +9 140332478 rs6606582 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9675;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +9 140356422 rs28452008 G C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.82;AVGPOST=0.9775;ERATE=0.0120;EUR_AF=0.38;LDAF=0.4702;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.42 +9 140357972 rs1891627 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9970;RSQ=0.8983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.16,-0.03 +9 140374861 rs1891630 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +9 140483076 rs2259657 G A 100 PASS AA=a;AC=1;AF=0.52;AFR_AF=0.85;AMR_AF=0.63;AN=2;ASN_AF=0.16;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5165;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 494804 rs10105131 C G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.58;AMR_AF=0.74;AN=2;ASN_AF=0.70;AVGPOST=0.9290;ERATE=0.0026;EUR_AF=0.73;LDAF=0.6875;RSQ=0.8790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.73,-0.09 +8 618728 rs2271263 A G 100 PASS AA=A;AC=1;AF=0.87;AFR_AF=0.78;AMR_AF=0.89;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8734;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 681206 rs11781283 G C 100 PASS AA=c;AC=1;AF=0.34;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.11;AVGPOST=0.9748;ERATE=0.0041;EUR_AF=0.49;LDAF=0.3465;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-0.54,-0.15,-4.40 +8 1514009 rs2301963 C A 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.35;AMR_AF=0.55;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4393;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 1581226 rs6995760 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.77;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3535;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 1616718 rs2235112 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.79;AMR_AF=0.40;AN=2;ASN_AF=0.55;AVGPOST=0.9935;ERATE=0.0007;EUR_AF=0.26;LDAF=0.4799;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +8 1728557 rs150047904 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0105;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 1817314 rs7003839 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=0.23;LDAF=0.2385;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 1817367 rs7003969 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2729;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 1830928 rs4543586 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.62;AMR_AF=0.68;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.59;LDAF=0.7181;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.17,-0.48,-0.18 +8 1846562 rs755543 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.64;AMR_AF=0.51;AN=2;ASN_AF=0.47;AVGPOST=0.9871;ERATE=0.0173;EUR_AF=0.42;LDAF=0.4997;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.72,-0.00 +8 1871896 rs2272614 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1518;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 1900855 rs7832438 A G 100 PASS AA=a;AC=2;AF=0.94;AFR_AF=0.92;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9401;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 2005624 rs3765206 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.42;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0018;EUR_AF=0.36;LDAF=0.2908;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 2007230 rs6558591 A C 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.84;LDAF=0.8757;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 2021421 rs2272720 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.03;AMR_AF=0.41;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3099;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 2024207 rs7822836 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.90;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9602;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +8 2024405 rs3817698 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.45;LDAF=0.4243;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 2040298 rs2235122 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.17;LDAF=0.1427;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 2040337 rs6420202 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9862;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 2044046 rs58868465 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.42;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=0.9978;ERATE=0.0034;EUR_AF=0.08;LDAF=0.2287;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 2048640 rs3779838 C A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=0.9921;ERATE=0.0064;EUR_AF=0.56;LDAF=0.6535;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 2048811 rs4876227 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9588;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 2054012 rs12677887 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.28;AMR_AF=0.50;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.67;LDAF=0.4779;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 2054171 rs3817705 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2793;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 2054195 rs3817706 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.29;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0020;EUR_AF=0.60;LDAF=0.5019;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 2077072 rs2280902 A G 100 PASS AA=a;AC=1;AF=0.65;AFR_AF=0.71;AMR_AF=0.59;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6495;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 2092578 rs200851248 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 6272399 rs2305022 G T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.39;AMR_AF=0.83;AN=2;ASN_AF=0.78;AVGPOST=0.9977;ERATE=0.0007;EUR_AF=0.81;LDAF=0.7088;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 6296550 rs2442513 G T 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9286;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 6302183 rs930557 G C 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.25;AMR_AF=0.83;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6841;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 6302418 rs2515569 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9941;ERATE=0.0022;EUR_AF=1.00;LDAF=0.9886;RSQ=0.7875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 6303025 rs2584 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.03;AVGPOST=0.9944;ERATE=0.0007;EUR_AF=0.36;LDAF=0.1836;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 6385150 rs144373407 G A 100 PASS AA=G;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0018;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +8 6390027 rs2515481 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3332;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 6478956 rs2936531 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.40;AN=2;ASN_AF=0.66;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5056;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 6478960 rs11137040 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.28;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=0.9968;ERATE=0.0021;EUR_AF=0.29;LDAF=0.2157;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 6478986 rs2912010 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.65;AVGPOST=0.9961;ERATE=0.0022;EUR_AF=0.42;LDAF=0.4644;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 6479042 rs1057090 C T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.40;AN=2;ASN_AF=0.65;AVGPOST=0.9970;ERATE=0.0005;EUR_AF=0.42;LDAF=0.4937;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 6479178 rs2912016 C A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.48;AMR_AF=0.31;AN=2;ASN_AF=0.45;AVGPOST=0.9987;ERATE=0.0017;EUR_AF=0.36;LDAF=0.4037;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 6500544 rs1057091 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.29;LDAF=0.2252;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 6728198 rs1047031 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2085;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 6735300 rs2293958 T A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.86;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8291;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 6735399 rs11362 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4054;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 6735423 rs1800972 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.93;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8455;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 6793540 rs736227 C T 100 PASS AA=.;AC=2;AF=0.66;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6604;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 6913031 rs2272719 G A 100 PASS AA=.;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3059;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 7308386 rs1042797 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.35;AMR_AF=0.50;AN=2;ASN_AF=0.44;AVGPOST=0.8727;ERATE=0.0084;EUR_AF=0.47;LDAF=0.4348;RSQ=0.8086;SNPSOURCE=EXOME;THETA=0.0173;VT=SNP GT:DS:GL 1|0:1.350:-4.70,-0.39,-0.23 +8 7308729 rs2294141 G C 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.36;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=0.9176;ERATE=0.0082;EUR_AF=0.41;LDAF=0.4229;RSQ=0.8455;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|1:1.800:-3.52,-0.50,-0.17 +8 7319059 rs200271729 G T 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.8255;ERATE=0.0121;EUR_AF=0.99;LDAF=0.8919;RSQ=0.2046;SNPSOURCE=EXOME;THETA=0.0187;VT=SNP GT:DS:GL 1|1:1.900:-0.48,-0.48,-0.48 +8 7328067 rs200118617 A C 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.47;AMR_AF=0.69;AN=2;ASN_AF=0.61;AVGPOST=0.6406;ERATE=0.0114;EUR_AF=0.62;LDAF=0.5481;RSQ=0.2588;SNPSOURCE=EXOME;THETA=0.0208;VT=SNP GT:DS:GL 1|0:0.900:-0.35,-0.41,-0.78 +8 7340204 rs138253070 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=0.8949;ERATE=0.0048;EUR_AF=0.13;LDAF=0.1391;RSQ=0.6455;SNPSOURCE=EXOME;THETA=0.0189;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +8 7353480 rs201256319 G T 100 PASS AA=.;AC=1;AF=0.34;AFR_AF=0.35;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.6663;ERATE=0.0254;EUR_AF=0.30;LDAF=0.4359;RSQ=0.3088;SNPSOURCE=EXOME;THETA=0.0175;VT=SNP GT:DS:GL 1|0:1.150:-0.48,-0.48,-0.48 +8 7366586 rs200698984 T C 100 PASS AA=.;AC=2;AF=0.54;AFR_AF=0.36;AMR_AF=0.57;AN=2;ASN_AF=0.56;AVGPOST=0.7047;ERATE=0.0170;EUR_AF=0.62;LDAF=0.5266;RSQ=0.4032;SNPSOURCE=EXOME;THETA=0.0237;VT=SNP GT:DS:GL 1|1:1.200:-0.48,-0.48,-0.48 +8 7673126 rs200631345 C A 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.52;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.7141;ERATE=0.0316;EUR_AF=0.44;LDAF=0.4991;RSQ=0.3896;SNPSOURCE=EXOME;THETA=0.0245;VT=SNP GT:DS:GL 1|0:1.300:-1.92,-0.40,-0.23 +8 7682797 rs202102718 G C 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.32;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=0.7122;ERATE=0.0165;EUR_AF=0.54;LDAF=0.4959;RSQ=0.3969;SNPSOURCE=EXOME;THETA=0.0126;VT=SNP GT:DS:GL 1|0:1.250:-0.89,-0.39,-0.33 +8 7686323 rs201085281 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.33;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.8700;ERATE=0.0079;EUR_AF=0.43;LDAF=0.3995;RSQ=0.7268;SNPSOURCE=EXOME;THETA=0.0103;VT=SNP GT:DS:GL 1|0:1.150:-5.00,-0.12,-0.63 +8 7706187 rs200013544 G T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.60;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=0.6662;ERATE=0.0110;EUR_AF=0.94;LDAF=0.7293;RSQ=0.3485;SNPSOURCE=EXOME;THETA=0.0207;VT=SNP GT:DS:GL 1|1:1.300:-0.48,-0.48,-0.48 +8 7718187 rs3177011 T G 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.17;AMR_AF=0.52;AN=2;ASN_AF=0.39;AVGPOST=0.9201;ERATE=0.0114;EUR_AF=0.39;LDAF=0.3810;RSQ=0.8758;SNPSOURCE=LOWCOV,EXOME;THETA=0.0160;VT=SNP GT:DS:GL 0|1:1.000:-2.24,-0.00,-4.70 +8 7718266 rs3860876 A T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.68;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.8852;ERATE=0.0078;EUR_AF=0.97;LDAF=0.8601;RSQ=0.6763;SNPSOURCE=EXOME;THETA=0.0099;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.12,-0.03 +8 7720995 rs199909847 T C 100 PASS AA=T;AC=2;AF=0.22;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9178;ERATE=0.0035;EUR_AF=0.26;LDAF=0.2440;RSQ=0.7918;SNPSOURCE=EXOME;THETA=0.0127;VT=SNP GT:DS:GL 1|1:1.550:-3.05,-0.47,-0.18 +8 7754021 rs200885320 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.18;AMR_AF=0.13;AN=2;ASN_AF=0.21;AVGPOST=0.7069;ERATE=0.0364;EUR_AF=0.17;LDAF=0.3051;RSQ=0.3310;SNPSOURCE=EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:0.800:-0.48,-0.48,-0.48 +8 8176221 rs13269488 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.43;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9971;ERATE=0.0006;EUR_AF=0.52;LDAF=0.5172;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 8176554 rs12549973 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.60;AVGPOST=0.9947;ERATE=0.0019;EUR_AF=0.25;LDAF=0.3154;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 8176825 rs6601691 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.44;AMR_AF=0.47;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5291;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 8234113 rs2921005 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0731;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 8643582 rs2271340 C G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.76;AMR_AF=0.78;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8003;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 8655023 rs3748144 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8094;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 8747537 rs399123 T C 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.18;AMR_AF=0.59;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.48;LDAF=0.5308;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 8747894 rs429433 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.93;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9604;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 8748850 rs200026075 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0012;RSQ=0.7891;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 8860620 rs2288672 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=0.76;AVGPOST=0.9965;ERATE=0.0008;EUR_AF=0.92;LDAF=0.8502;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +8 8860709 rs28510464 T G 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.42;AMR_AF=0.23;AN=2;ASN_AF=0.03;AVGPOST=0.9804;ERATE=0.0018;EUR_AF=0.31;LDAF=0.2479;RSQ=0.9628;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.41,-0.01,-1.72 +8 8869199 rs9650616 T G 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.44;AMR_AF=0.34;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3227;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 8869277 rs28665409 G A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.48;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3322;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 8875764 rs7822129 G T 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.42;AMR_AF=0.22;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2386;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 8998262 rs434238 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=0.9863;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3558;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 8998263 rs408773 T G 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.68;AVGPOST=0.9861;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3564;RSQ=0.9827;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 8999187 rs330924 G C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.39;AMR_AF=0.41;AN=2;ASN_AF=0.79;AVGPOST=0.9988;ERATE=0.0008;EUR_AF=0.30;LDAF=0.4664;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 9414049 rs33945943 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2824;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 9414159 rs34790717 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.24;LDAF=0.2810;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 9564437 rs7006985 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.54;AMR_AF=0.60;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5457;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 9577940 rs6601360 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9785;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 9609331 rs13265931 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9992;ERATE=0.0016;EUR_AF=0.16;LDAF=0.1669;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 9627603 rs34806026 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0167;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10285825 rs10903326 T G 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.73;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9373;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 10383226 rs4521726 C G 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.64;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=0.9962;ERATE=0.0016;EUR_AF=0.82;LDAF=0.7265;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +8 10390452 rs4406360 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0015;EUR_AF=0.35;LDAF=0.3428;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 10396054 rs6601483 A C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.66;AMR_AF=0.67;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6676;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 10464885 rs56382513 T C 100 PASS AA=t;AC=1;AF=0.64;AFR_AF=0.45;AMR_AF=0.65;AN=2;ASN_AF=0.98;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6423;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 10465097 rs4354268 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.34;AN=2;ASN_AF=0.02;AVGPOST=0.9969;ERATE=0.0007;EUR_AF=0.48;LDAF=0.3292;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +8 10465190 rs72494282 C T 100 PASS AA=-;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1889;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.21,-0.42 +8 10465344 rs11778341 C A 100 PASS AA=-;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1780;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 10465399 rs11782670 T A 100 PASS AA=-;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.16;AN=2;ASN_AF=0.37;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1750;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 10465748 rs11783478 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.44;AMR_AF=0.65;AN=2;ASN_AF=0.98;AVGPOST=0.9984;ERATE=0.0007;EUR_AF=0.51;LDAF=0.6392;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 10465771 rs11785822 G T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9414;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 10466482 rs13267180 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.43;AMR_AF=0.35;AN=2;ASN_AF=0.02;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3332;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10467207 rs4840498 C A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9547;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 10469233 rs35602868 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.34;AMR_AF=0.38;AN=2;ASN_AF=0.02;AVGPOST=0.9819;ERATE=0.0039;EUR_AF=0.53;LDAF=0.3302;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10469817 rs6996950 G A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.79;AMR_AF=0.81;AN=2;ASN_AF=0.61;AVGPOST=0.9947;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7762;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10470068 rs74990397 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.34;AN=2;ASN_AF=0.02;AVGPOST=0.9868;ERATE=0.0004;EUR_AF=0.50;LDAF=0.3135;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10470148 rs74400517 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.05;AN=2;AVGPOST=0.9975;ERATE=0.0007;EUR_AF=0.11;LDAF=0.0510;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10474042 rs4388421 T G 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.24;AN=2;ASN_AF=0.47;AVGPOST=0.9911;ERATE=0.0016;EUR_AF=0.13;LDAF=0.2483;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 10530218 rs11250058 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9908;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.92,-0.00 +8 10532355 rs4841419 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=0.95;AVGPOST=0.9981;ERATE=0.0029;EUR_AF=1.00;LDAF=0.9444;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 10583203 rs10110624 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.87;AMR_AF=0.62;AN=2;ASN_AF=0.36;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.69;LDAF=0.6332;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10583476 rs113624178 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0064;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10584212 rs10100209 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.86;AMR_AF=0.65;AN=2;ASN_AF=0.47;AVGPOST=0.9966;ERATE=0.0011;EUR_AF=0.62;LDAF=0.6413;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10623138 rs1078543 T A 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.42;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1681;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10677792 rs2409653 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0667;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10683623 rs2271357 G A 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.71;AMR_AF=0.37;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4140;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +8 10689142 rs7004998 G T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.71;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3858;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 10690509 rs6993753 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0585;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 10692158 rs2271355 C T 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.73;AMR_AF=0.46;AN=2;ASN_AF=0.17;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.55;LDAF=0.4779;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 10692242 rs1052523 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0444;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11167233 rs7009857 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0695;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 11177372 rs2293854 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.18;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1157;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11188703 rs4841520 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=0.9892;ERATE=0.0025;EUR_AF=0.06;LDAF=0.1110;RSQ=0.9613;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.45,-2.37 +8 11189316 rs2736269 G C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.89;AMR_AF=0.73;AN=2;ASN_AF=0.93;AVGPOST=0.9509;ERATE=0.0168;EUR_AF=0.59;LDAF=0.7616;RSQ=0.9164;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11189344 rs2572403 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=0.9954;ERATE=0.0007;EUR_AF=0.06;LDAF=0.1428;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:0.950:-0.39,-0.23,-2.55 +8 11189488 rs12681987 T C 100 PASS AA=N;AC=1;AF=0.57;AFR_AF=0.49;AMR_AF=0.54;AN=2;ASN_AF=0.81;AVGPOST=0.9697;ERATE=0.0202;EUR_AF=0.46;LDAF=0.5687;RSQ=0.9613;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-0.17,-0.49,-2.77 +8 11189533 rs74495029 A C 100 PASS AA=a;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=0.9943;ERATE=0.0044;EUR_AF=0.07;LDAF=0.1121;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-2.74,-0.26,-0.34 +8 11301753 rs3021513 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9971;RSQ=0.9340;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 11406593 rs3816668 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.52;AMR_AF=0.46;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4045;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11414237 rs2306234 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.75;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.85;LDAF=0.8612;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 11415572 rs4841557 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.65;AMR_AF=0.52;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4690;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 11415597 rs4841558 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.64;AMR_AF=0.52;AN=2;ASN_AF=0.05;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4659;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 11418773 rs4841561 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.37;AMR_AF=0.46;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.5188;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11421384 rs10097015 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.49;AMR_AF=0.47;AN=2;ASN_AF=0.93;AVGPOST=0.9912;ERATE=0.0028;EUR_AF=0.34;LDAF=0.5485;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +8 11629119 rs804269 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.44;AMR_AF=0.74;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7107;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11629129 rs804268 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3609;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11667179 rs8417 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2326;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11683653 rs904011 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9960;ERATE=0.0017;EUR_AF=1.00;LDAF=0.9701;RSQ=0.9498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 11687938 rs1293313 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9712;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 11687959 rs2294137 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3158;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11689119 rs9205 G C 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.22;LDAF=0.3134;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11689228 rs2409836 T G 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.39;AMR_AF=0.64;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6430;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11695872 rs10903343 T C 100 PASS AA=t;AC=1;AF=0.62;AFR_AF=0.35;AMR_AF=0.63;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6170;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11702594 rs709821 G C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1376;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 11704719 rs1692817 C A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.26;AMR_AF=0.21;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.24;LDAF=0.1770;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 11705139 rs2294138 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.25;AMR_AF=0.36;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3701;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11705342 rs1736088 G C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.58;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0014;EUR_AF=0.61;LDAF=0.5618;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 11705677 rs2294140 C G 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.51;AMR_AF=0.40;AN=2;ASN_AF=0.49;AVGPOST=0.9978;ERATE=0.0055;EUR_AF=0.40;LDAF=0.4472;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11706581 rs13332 T G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.73;AMR_AF=0.59;AN=2;ASN_AF=0.49;AVGPOST=0.9843;ERATE=0.0122;EUR_AF=0.62;LDAF=0.6056;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 11708355 rs2272766 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.37;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3900;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11710888 rs12338 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.38;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0012;EUR_AF=0.39;LDAF=0.4056;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11710974 rs17154017 G A 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0458;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 11832079 rs10108075 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.7354;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 12592956 rs13251315 C A 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.41;AMR_AF=0.96;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8303;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +8 12600720 rs1139354 T A 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0353;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 12878637 rs528255 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9972;RSQ=0.9763;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 12878677 rs622106 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.52;AMR_AF=0.73;AN=2;ASN_AF=0.71;AVGPOST=0.9600;ERATE=0.0420;EUR_AF=0.73;LDAF=0.6729;RSQ=0.9317;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 12878807 rs3739310 T G 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.49;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.76;LDAF=0.6969;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 12878830 rs3739309 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.22;AMR_AF=0.32;AN=2;ASN_AF=0.14;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3086;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 12879062 rs503550 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.59;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7482;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 12879099 rs63744861 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.59;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7481;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 12879334 rs608909 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.58;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9993;ERATE=0.0011;EUR_AF=0.82;LDAF=0.7467;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 12879539 rs608052 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.57;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.82;LDAF=0.7445;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 12879600 rs498852 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +8 13258936 rs289583 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 13356802 rs3816747 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.86;AMR_AF=0.80;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8136;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 13356818 rs11203494 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.80;AMR_AF=0.92;AN=2;ASN_AF=0.97;AVGPOST=0.9808;ERATE=0.0205;EUR_AF=0.83;LDAF=0.8725;RSQ=0.9430;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 13356819 rs11203495 T G 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.54;AVGPOST=0.9806;ERATE=0.0340;EUR_AF=0.79;LDAF=0.6571;RSQ=0.9729;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 13357587 rs1383942 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.94;LDAF=0.7463;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 15978063 rs4338104 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 16012648 rs3747531 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1504;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 16939284 rs12056715 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.25;AMR_AF=0.15;AN=2;ASN_AF=0.36;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.09;LDAF=0.2088;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +8 16942837 rs2285264 C T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.90;AMR_AF=0.60;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6884;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 16942849 rs2285265 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.63;AMR_AF=0.45;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.39;LDAF=0.4721;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17067520 rs150543362 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0100;RSQ=0.9609;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17067574 rs73198534 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.31;AVGPOST=0.9731;ERATE=0.0257;EUR_AF=0.24;LDAF=0.2485;RSQ=0.9490;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17074640 rs3213600 C G 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.33;AMR_AF=0.36;AN=2;ASN_AF=0.43;AVGPOST=0.9972;ERATE=0.0007;EUR_AF=0.26;LDAF=0.3355;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +8 17125768 rs11555738 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.38;AMR_AF=0.34;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.3524;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17142065 rs2285269 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.38;AMR_AF=0.34;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3502;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17143830 rs3793427 G C 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.61;AMR_AF=0.45;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.5069;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +8 17157677 rs3764796 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0009;EUR_AF=0.12;LDAF=0.0982;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17159812 rs6587028 G A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.91;AMR_AF=0.69;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.68;LDAF=0.7680;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17166763 rs199514566 A C 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +8 17230644 rs7388581 G C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17270763 rs2073694 G C 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.10;AMR_AF=0.59;AN=2;ASN_AF=0.48;AVGPOST=0.9894;ERATE=0.0005;EUR_AF=0.49;LDAF=0.4146;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +8 17270787 rs67972978 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.91;AMR_AF=0.95;AN=2;ASN_AF=0.96;AVGPOST=0.9293;ERATE=0.0267;EUR_AF=0.92;LDAF=0.9169;RSQ=0.6478;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +8 17270837 rs72607374 G C 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.11;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9739;ERATE=0.0011;EUR_AF=0.47;LDAF=0.4078;RSQ=0.9645;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +8 17396380 rs13259948 G A 100 PASS AA=g;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.11;AN=2;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.17;LDAF=0.0804;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17396415 rs13259978 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9978;ERATE=0.0019;EUR_AF=0.19;LDAF=0.1815;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17406183 rs737039 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.36;AMR_AF=0.67;AN=2;ASN_AF=0.61;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5775;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17415796 rs80330909 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0302;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17478525 rs80343296 G T 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0913;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17486282 rs2517221 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9979;ERATE=0.0041;EUR_AF=0.99;LDAF=0.9803;RSQ=0.9581;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17491730 rs7006613 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.71;AMR_AF=0.36;AN=2;ASN_AF=0.31;AVGPOST=0.9988;ERATE=0.0028;EUR_AF=0.15;LDAF=0.3528;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17500119 rs17633132 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1217;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17500223 rs4705 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.21;AMR_AF=0.42;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0025;EUR_AF=0.58;LDAF=0.4400;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17503431 rs1043883 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.26;AMR_AF=0.46;AN=2;ASN_AF=0.43;AVGPOST=0.9975;ERATE=0.0014;EUR_AF=0.65;LDAF=0.4756;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17541999 rs2979792 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.42;AVGPOST=0.9955;ERATE=0.0005;EUR_AF=0.40;LDAF=0.3223;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17579318 rs143889879 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.01;LDAF=0.0131;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17611886 rs2979788 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.37;AMR_AF=0.83;AN=2;ASN_AF=0.63;AVGPOST=0.9856;ERATE=0.0200;EUR_AF=0.86;LDAF=0.6824;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17612043 rs61733694 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0187;RSQ=0.9684;SNPSOURCE=LOWCOV,EXOME;THETA=0.0158;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17612456 rs11203910 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.72;AMR_AF=0.95;AN=2;ASN_AF=0.80;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8586;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17612846 rs3739408 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1504;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17612875 rs3739407 A G 100 PASS AA=a;AC=1;AF=0.69;AFR_AF=0.56;AMR_AF=0.68;AN=2;ASN_AF=0.65;AVGPOST=0.9988;ERATE=0.0027;EUR_AF=0.81;LDAF=0.6927;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17612900 rs199854201 C T 100 PASS AA=c;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0006;RSQ=0.8218;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17726019 rs10112643 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.17;AMR_AF=0.40;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0015;EUR_AF=0.68;LDAF=0.4571;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17731961 rs2653406 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.28;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1509;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17739538 rs3739406 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.22;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4703;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17742953 rs2073563 T G 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.31;AMR_AF=0.16;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1284;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17743020 rs484373 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.83;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.78;LDAF=0.6787;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17793093 rs445422 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0841;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17796382 rs41364448 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.64;AMR_AF=0.59;AN=2;ASN_AF=0.54;AVGPOST=0.9771;ERATE=0.0320;EUR_AF=0.65;LDAF=0.6075;RSQ=0.9679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17796383 rs114261839 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.60;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9703;ERATE=0.0515;EUR_AF=0.63;LDAF=0.5806;RSQ=0.9617;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17797409 rs2285303 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.59;AMR_AF=0.46;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.71;LDAF=0.5953;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17804665 rs28655174 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.62;LDAF=0.3410;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17814915 rs208753 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.81;AMR_AF=0.63;AN=2;ASN_AF=0.62;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7228;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17819572 rs3780103 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.19;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.57;LDAF=0.3330;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17830005 rs17514547 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0130;RSQ=0.9541;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17849147 rs370429 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.14;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1127;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17867275 rs443743 T G 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.19;AMR_AF=0.14;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1188;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +8 17871563 rs73666809 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.18;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0932;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17918934 rs10103355 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.97;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17921921 rs2073574 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.64;AMR_AF=0.46;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5759;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17924849 rs12675283 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.36;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3691;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17927280 rs2106037 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.16;AMR_AF=0.46;AN=2;ASN_AF=0.29;AVGPOST=0.9979;ERATE=0.0069;EUR_AF=0.44;LDAF=0.3392;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 17927294 rs4921834 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.47;LDAF=0.4222;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17927327 rs1049874 T C 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4246;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17928811 rs1071645 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4236;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 17928920 rs12547845 T C 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.36;AVGPOST=0.9982;ERATE=0.0020;EUR_AF=0.47;LDAF=0.4270;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +8 17930727 rs6586687 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.35;AVGPOST=0.9981;ERATE=0.0011;EUR_AF=0.47;LDAF=0.4205;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +8 17930734 rs7461977 C A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.35;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.47;LDAF=0.4212;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +8 17930772 rs3753115 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.35;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4215;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +8 17933099 rs35513736 G A 100 PASS AA=.;AC=1;AF=0.10;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1010;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 17933146 rs34482943 C T 100 PASS AA=.;AC=1;AF=0.10;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 18257854 rs1801280 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2971;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 18257994 rs1799929 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.26;AMR_AF=0.36;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2788;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 18413875 rs2260920 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 18457957 rs2932001 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.68;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.89;LDAF=0.8604;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 18658878 rs143901818 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0060;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 18658929 rs1386691 C A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.84;AMR_AF=0.88;AN=2;ASN_AF=0.80;AVGPOST=0.9930;ERATE=0.0080;EUR_AF=0.92;LDAF=0.8611;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +8 18729817 rs59018241 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=0.9540;ERATE=0.0429;EUR_AF=0.53;LDAF=0.6714;RSQ=0.9364;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 18729818 rs7003060 T G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.70;AMR_AF=0.66;AN=2;ASN_AF=0.83;AVGPOST=0.9541;ERATE=0.0469;EUR_AF=0.53;LDAF=0.6691;RSQ=0.9387;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 18793697 rs10092681 T A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.92;AMR_AF=0.96;AN=2;ASN_AF=0.98;AVGPOST=0.9773;ERATE=0.0219;EUR_AF=0.97;LDAF=0.9523;RSQ=0.8033;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 19177103 rs2280444 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0599;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 19190491 rs1574288 A G 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.42;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2321;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 19192192 rs17128221 T C 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.51;AMR_AF=0.18;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2698;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 19192332 rs56005620 G T 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.57;AMR_AF=0.22;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2663;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0159;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 19218697 rs58037995 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0098;RSQ=0.9764;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 19218766 rs4921637 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.48;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2336;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 19277817 rs6999786 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.25;AMR_AF=0.63;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5451;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 19316086 rs12155539 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.21;AMR_AF=0.51;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4726;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 19362768 rs7017776 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.60;AMR_AF=0.84;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7734;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 19677915 rs7822495 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.27;AMR_AF=0.27;AN=2;ASN_AF=0.28;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2380;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 19689633 rs4434638 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8762;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 19816934 rs301 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.39;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9883;ERATE=0.1007;EUR_AF=0.43;LDAF=0.4268;RSQ=0.9689;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 20036713 rs1390938 A G 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.92;AMR_AF=0.58;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.73;LDAF=0.7440;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 20036869 rs17215801 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0004;LDAF=0.0181;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 20068163 rs7460146 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9861;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 20068842 rs17092159 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0580;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 20111016 rs141146887 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0060;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 21550768 rs15881 A C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.68;AMR_AF=0.38;AN=2;ASN_AF=0.49;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.47;LDAF=0.5084;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 21550800 rs1128397 A T 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.34;AMR_AF=0.31;AN=2;ASN_AF=0.44;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3840;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 21608105 rs80120686 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0641;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 21766881 rs2242241 A C 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0003;LDAF=0.0104;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 21900505 rs3176266 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.22;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0506;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +8 21905772 rs3176304 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9920;ERATE=0.0005;EUR_AF=0.29;LDAF=0.2343;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +8 21925214 rs6997244 C G 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.59;AMR_AF=0.79;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8053;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +8 21927460 rs7386762 C G 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.34;AMR_AF=0.76;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7408;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 21930007 rs3824334 G A 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.55;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=0.9973;ERATE=0.0012;EUR_AF=0.84;LDAF=0.8072;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.45,-0.02 +8 21937667 rs6557781 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.75;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.84;LDAF=0.8505;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 21955552 rs1973254 T C 100 PASS AA=.;AC=2;AF=0.60;AFR_AF=0.48;AMR_AF=0.70;AN=2;ASN_AF=0.62;AVGPOST=0.9977;ERATE=0.0016;EUR_AF=0.62;LDAF=0.5993;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.00,-0.00 +8 21958333 rs1552283 T C 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 21959191 rs6557810 A G 100 PASS AA=.;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9587;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.14,-0.00 +8 21959638 rs13267096 A G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.24;AMR_AF=0.38;AN=2;ASN_AF=0.53;AVGPOST=0.9798;ERATE=0.0006;EUR_AF=0.25;LDAF=0.3402;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 21959639 rs13253275 C T 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.25;AMR_AF=0.38;AN=2;ASN_AF=0.53;AVGPOST=0.9797;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3411;RSQ=0.9717;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22020066 rs13248346 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.71;AVGPOST=0.9863;ERATE=0.0067;EUR_AF=0.43;LDAF=0.5702;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0119;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22020294 rs2070684 C A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.37;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9925;ERATE=0.0030;EUR_AF=0.89;LDAF=0.6978;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0075;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22053123 rs4075478 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.71;AMR_AF=0.50;AN=2;ASN_AF=0.55;AVGPOST=0.9952;ERATE=0.0005;EUR_AF=0.40;LDAF=0.5252;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22054197 rs2229777 T C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.08;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.13;LDAF=0.1362;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 22079355 rs4872422 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9973;RSQ=0.6942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0291;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.27,-0.02 +8 22081708 rs4075536 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.22;AMR_AF=0.76;AN=2;ASN_AF=0.82;AVGPOST=0.9829;ERATE=0.0020;EUR_AF=0.81;LDAF=0.6701;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22084503 rs11547656 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9886;ERATE=0.0013;EUR_AF=0.41;LDAF=0.3098;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 22104691 rs34392777 G T 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.04;AMR_AF=0.42;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.40;LDAF=0.3369;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22105502 rs1126677 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.44;AMR_AF=0.75;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.74;LDAF=0.6942;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22106638 rs148812870 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0097;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22147333 rs4872463 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.17;AMR_AF=0.58;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0019;EUR_AF=0.51;LDAF=0.5209;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22172702 rs4397403 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.05;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0033;EUR_AF=0.38;LDAF=0.3318;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22211756 rs66554545 T A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.26;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5765;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22262418 rs2293144 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.80;AMR_AF=0.59;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6567;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22273687 rs6558052 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.71;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0016;EUR_AF=0.06;LDAF=0.2491;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22273829 rs6558053 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.58;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.0013;LDAF=0.1588;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22428658 rs2449331 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.76;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9251;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22429373 rs2280889 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1371;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22442287 rs4872003 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.47;AVGPOST=0.9973;ERATE=0.0037;EUR_AF=0.60;LDAF=0.5659;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22442661 rs2294047 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.59;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.61;LDAF=0.5671;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0103;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22526559 rs17088526 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.27;LDAF=0.1234;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.51 +8 22548526 rs199865032 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.8415;SNPSOURCE=EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 22548790 rs3750192 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.23;AVGPOST=0.9942;ERATE=0.0004;EUR_AF=0.06;LDAF=0.1141;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22570844 rs3853 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.29;AVGPOST=0.9874;ERATE=0.0043;EUR_AF=0.33;LDAF=0.3255;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22570935 rs1047406 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.29;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3166;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22571018 rs1047398 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.29;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3173;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22584718 rs1129474 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.74;AMR_AF=0.56;AN=2;ASN_AF=0.25;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4818;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22863004 rs2430811 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8903;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22863017 rs2466179 G T 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.78;AMR_AF=0.84;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8615;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22864622 rs2466178 T C 100 PASS AA=T;AC=1;AF=0.89;AFR_AF=0.88;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8844;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22880162 rs1047275 G C 100 PASS AA=g;AC=1;AF=0.47;AFR_AF=0.25;AMR_AF=0.46;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.59;LDAF=0.4682;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22886020 rs13265018 A G 100 PASS AA=N;AC=1;AF=0.88;AFR_AF=0.74;AMR_AF=0.84;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8771;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22886130 rs2293399 A G 100 PASS AA=N;AC=1;AF=0.88;AFR_AF=0.74;AMR_AF=0.84;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8770;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22888407 rs10866818 G A 100 PASS AA=a;AC=1;AF=0.87;AFR_AF=0.72;AMR_AF=0.84;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8707;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22900701 rs1047266 G A 100 PASS AA=g;AC=2;AF=0.13;AFR_AF=0.0020;AMR_AF=0.16;AN=2;ASN_AF=0.29;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1253;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 22926313 rs1129424 G A 100 PASS AA=a;AC=2;AF=0.74;AFR_AF=0.78;AMR_AF=0.74;AN=2;ASN_AF=0.91;AVGPOST=0.9940;ERATE=0.0005;EUR_AF=0.59;LDAF=0.7426;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.32,-0.02 +8 22960704 rs6557616 G C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8137;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22972321 rs4242389 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.14;AMR_AF=0.13;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1605;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 22974370 rs151239314 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=0.8846;ERATE=0.0613;EUR_AF=0.16;LDAF=0.2074;RSQ=0.6742;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.900:-0.49,-0.21,-1.27 +8 22974415 rs11780526 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.27;AVGPOST=0.9656;ERATE=0.0185;EUR_AF=0.09;LDAF=0.1352;RSQ=0.8803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +8 22974450 rs9644063 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.58;AMR_AF=0.86;AN=2;ASN_AF=0.85;AVGPOST=0.9982;ERATE=0.0046;EUR_AF=0.79;LDAF=0.7719;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23001988 rs1133782 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.53;AMR_AF=0.69;AN=2;ASN_AF=0.94;AVGPOST=0.9978;ERATE=0.0021;EUR_AF=0.60;LDAF=0.6879;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23004629 rs3924519 T C 100 PASS AA=N;AC=1;AF=0.50;AFR_AF=0.41;AMR_AF=0.48;AN=2;ASN_AF=0.88;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.28;LDAF=0.5006;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-1.69,-0.01,-5.00 +8 23049292 rs2230229 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8998;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 23058188 rs4872077 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.36;AMR_AF=0.33;AN=2;ASN_AF=0.08;AVGPOST=0.9975;ERATE=0.0043;EUR_AF=0.31;LDAF=0.2652;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 23059280 rs4872078 G T 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.25;AMR_AF=0.58;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5699;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 23059324 rs20575 C G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.26;AMR_AF=0.58;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5717;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 23060256 rs6557634 T C 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.23;AMR_AF=0.57;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5644;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 23104195 rs2294123 G T 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.13;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9958;ERATE=0.0011;EUR_AF=0.42;LDAF=0.3457;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.16,-0.51 +8 23117643 rs2294125 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.06;AMR_AF=0.41;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2550;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 23118155 rs9828 T C 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.06;AMR_AF=0.40;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.2482;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 23160778 rs3765215 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2194;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 23167300 rs11554932 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.11;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.07;LDAF=0.0548;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23167353 rs1063582 T G 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.68;AMR_AF=0.82;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7600;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23167435 rs2294126 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.16;AMR_AF=0.04;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0960;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 23174425 rs3824213 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.66;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7311;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +8 23174499 rs3736016 G A 100 PASS AA=G;AC=1;AF=0.05;AMR_AF=0.02;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0488;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 23186007 rs1051146 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.46;AMR_AF=0.59;AN=2;ASN_AF=0.47;AVGPOST=0.9989;ERATE=0.0022;EUR_AF=0.75;LDAF=0.5836;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23190926 rs2294128 C T 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0535;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23190941 rs1010156 T C 100 PASS AA=c;AC=2;AF=0.46;AFR_AF=0.31;AMR_AF=0.41;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4598;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 23190995 rs2294127 T C 100 PASS AA=c;AC=1;AF=0.05;AMR_AF=0.02;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0507;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23301340 rs11787224 A C 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.28;AMR_AF=0.24;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3094;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 23302164 rs2272640 A G 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.65;AMR_AF=0.30;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4218;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 23423669 rs2942194 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2005;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23423758 rs10992 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.13;AMR_AF=0.59;AN=2;ASN_AF=0.32;AVGPOST=0.9812;ERATE=0.0135;EUR_AF=0.68;LDAF=0.4497;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 23540417 rs11781886 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.69;AMR_AF=0.72;AN=2;ASN_AF=0.68;AVGPOST=0.9809;ERATE=0.0021;EUR_AF=0.71;LDAF=0.6957;RSQ=0.9632;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +8 23702587 rs1992053 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.65;AMR_AF=0.69;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5946;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24211278 rs7815643 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24211331 rs7814768 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24256470 rs2291577 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.21;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2923;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24261526 rs3765124 A G 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.43;LDAF=0.2948;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24339679 rs13255694 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.10;AMR_AF=0.41;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2468;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24356818 rs13259668 A C 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.30;AMR_AF=0.43;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2989;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24359068 rs13277171 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.10;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2491;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24366020 rs2290150 T C 100 PASS AA=T;AC=2;AF=0.28;AFR_AF=0.21;AMR_AF=0.42;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2765;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 24774683 rs196864 C A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.75;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9078;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 25042515 rs75913818 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0661;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.03,-1.16,-5.00 +8 25149501 rs78044122 T G 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.02;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0659;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 25181356 rs2666174 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9947;RSQ=0.9659;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 25203022 rs2468902 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9712;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 25216620 rs17053446 A T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.25;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3308;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 25222165 rs2271111 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2907;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 25230168 rs2271108 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4424;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 25230267 rs2271106 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4424;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 25234858 rs2659585 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 25247710 rs199531685 C T 100 PASS AA=C;AC=1;AF=0.0027;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 25257531 rs3763520 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.17;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5247;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 25267622 rs2709618 A G 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5364;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 25280666 rs2709608 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9657;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 25280800 rs6185 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.54;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2709;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 25323777 rs10108752 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9648;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 25365278 rs8537 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.35;AMR_AF=0.72;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6284;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 25744257 rs6557865 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9456;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 26240646 rs1055479 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.54;AN=2;ASN_AF=0.88;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7001;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 26265907 rs9644114 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.18;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.33;LDAF=0.1988;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 26441275 rs415524 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.75;AMR_AF=0.45;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4900;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 26481771 rs327222 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.95;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9484;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 26492397 rs78121726 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0188;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 26501493 rs113213704 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0073;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27099879 rs3739212 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.28;AMR_AF=0.44;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4248;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27101204 rs4733040 T A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.65;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7614;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27101206 rs7830662 A C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.65;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7614;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27147716 rs12386801 A C 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.18;AVGPOST=0.9983;ERATE=0.0055;EUR_AF=0.67;LDAF=0.4669;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27255080 rs2241649 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.26;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3451;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27255128 rs1045510 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.22;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3359;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27255146 rs1045511 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3300;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27255263 rs1045512 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.22;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3359;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27255325 rs2241650 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.22;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3363;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27293335 rs11774417 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2125;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27293865 rs7005936 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.42;AMR_AF=0.35;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3340;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 27294606 rs7005954 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.42;AMR_AF=0.36;AN=2;ASN_AF=0.15;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3391;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 27308538 rs751018 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.45;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3447;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 27308585 rs751019 A C 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3752;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27308961 rs2278319 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2112;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27311703 rs1879184 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.90;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7641;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27312040 rs10093964 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.60;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3824;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 27312135 rs7007145 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.60;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3826;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 27315876 rs1879182 A G 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7609;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27315900 rs1879181 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7541;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27319292 rs735421 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.33;LDAF=0.2532;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27369334 rs7816586 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.95;AMR_AF=0.55;AN=2;ASN_AF=0.59;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.54;LDAF=0.6472;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27462481 rs7982 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.55;AMR_AF=0.64;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6508;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27641609 rs1824449 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9849;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27667969 rs2294092 C G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.43;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.44;LDAF=0.4200;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27680576 rs727813 G T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.44;LDAF=0.4169;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27737198 rs4732610 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.88;AMR_AF=0.89;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8543;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 27764627 rs2726987 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.70;AMR_AF=0.64;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0015;EUR_AF=0.74;LDAF=0.7349;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27767171 rs2726991 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.39;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5308;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.31,-0.02,-5.00 +8 27767305 rs2726992 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.40;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5351;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-1.72,-0.01,-5.00 +8 27779545 rs10103504 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.40;AMR_AF=0.68;AN=2;ASN_AF=0.58;AVGPOST=0.9940;ERATE=0.0009;EUR_AF=0.61;LDAF=0.5694;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.24,-0.03 +8 27779811 rs4732613 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.48;AMR_AF=0.70;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6212;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +8 27880826 rs921597 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.21;AMR_AF=0.47;AN=2;ASN_AF=0.14;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.57;LDAF=0.3604;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 27903069 rs13279787 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.44;AMR_AF=0.37;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3807;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 27915830 rs4336563 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9905;RSQ=0.9654;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +8 27918057 rs7817227 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9687;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 27925204 rs4732620 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.63;AMR_AF=0.56;AN=2;ASN_AF=0.62;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5729;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 27927849 rs6998705 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9675;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.50,-0.00 +8 27957529 rs2290370 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.14;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 27967856 rs3213997 A G 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.64;AMR_AF=0.63;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6444;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 28013579 rs4732832 A C 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.61;AMR_AF=0.63;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6536;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 28206275 rs1046511 G C 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.14;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3218;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 28304769 rs1390963 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.54;AMR_AF=0.40;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4556;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 28384712 rs2241802 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5423;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 28574803 rs240951 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.16;AMR_AF=0.30;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.28;LDAF=0.2721;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 28600572 rs2048369 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2409;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 28651298 rs2665911 A C 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.29;AMR_AF=0.51;AN=2;ASN_AF=0.18;AVGPOST=0.9846;ERATE=0.0188;EUR_AF=0.54;LDAF=0.3830;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 28651300 rs2665912 A C 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.18;AVGPOST=0.9881;ERATE=0.0115;EUR_AF=0.40;LDAF=0.2974;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +8 28692783 rs28522383 C T 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.34;AMR_AF=0.67;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4612;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 29197672 rs583034 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.78;AMR_AF=0.59;AN=2;ASN_AF=0.63;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.46;LDAF=0.5989;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 29207845 rs3182143 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.60;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.25;LDAF=0.3144;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.91 +8 29927300 rs6468093 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 29927321 rs6468094 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 29931375 rs986636 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 29940505 rs3824207 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.09;AN=2;ASN_AF=0.22;AVGPOST=0.9943;ERATE=0.0008;EUR_AF=0.12;LDAF=0.1440;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +8 29961951 rs11557703 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.10;AMR_AF=0.07;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1261;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 30469805 rs7815625 A C 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.17;AMR_AF=0.25;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2989;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 30539623 rs2250192 T G 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.64;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7957;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 30546636 rs2551715 T C 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.74;AMR_AF=0.55;AN=2;ASN_AF=0.56;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.62;LDAF=0.6199;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 30554006 rs8190996 G A 100 PASS AA=g;AC=2;AF=0.43;AFR_AF=0.27;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4329;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 30695226 rs2720593 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 30889577 rs11574151 T G 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0084;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 30916085 rs2737316 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9746;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 30924557 rs1800389 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.51;AMR_AF=0.78;AN=2;ASN_AF=0.88;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7256;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 30941317 rs2737325 T C 100 PASS AA=t;AC=1;AF=0.46;AFR_AF=0.19;AMR_AF=0.56;AN=2;ASN_AF=0.55;AVGPOST=0.9329;ERATE=0.0631;EUR_AF=0.52;LDAF=0.4547;RSQ=0.9114;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.34,-0.27 +8 30948072 rs2247189 T A 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0992;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 30973957 rs1800392 G T 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.42;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 30977717 rs2725352 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.45;AMR_AF=0.61;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5141;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 30999123 rs2737335 G A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.51;AMR_AF=0.62;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.42;LDAF=0.5303;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 30999280 rs1801195 G T 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.51;AMR_AF=0.62;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 31000243 rs2725365 T C 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.39;AMR_AF=0.56;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4721;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 32406382 rs73234136 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.46;AN=2;ASN_AF=0.19;AVGPOST=0.9967;ERATE=0.0006;EUR_AF=0.47;LDAF=0.3362;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.17,-0.49,-2.85 +8 33246538 rs16880849 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2664;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 33246591 rs17855838 G C 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.44;AVGPOST=0.9924;ERATE=0.0041;EUR_AF=0.18;LDAF=0.2181;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 33246685 rs16880852 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2660;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 33347907 rs2732274 T G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.71;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6170;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 33356074 rs6468171 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.69;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5841;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 33369944 rs2304748 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.45;AMR_AF=0.47;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5388;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 33369994 rs3098657 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.69;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6106;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 33416189 rs3735950 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.64;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5187;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 33416222 rs3735951 C T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.87;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6211;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 33451026 rs2044162 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.07;AMR_AF=0.49;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.43;LDAF=0.3607;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 37635649 rs7463174 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.34;AVGPOST=0.9988;ERATE=0.0008;EUR_AF=0.15;LDAF=0.1985;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 37686749 rs6468442 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=0.88;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.78;LDAF=0.8499;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 37693302 rs10101560 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9758;RSQ=0.9570;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.36,-0.00 +8 37699195 rs4976898 C G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.71;AN=2;ASN_AF=0.88;AVGPOST=0.9073;ERATE=0.0102;EUR_AF=0.71;LDAF=0.7596;RSQ=0.8090;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +8 37702472 rs34817565 G A 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.12;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0393;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 37728017 rs7817179 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.85;AMR_AF=0.75;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8341;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 37728019 rs7820872 T G 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.82;AMR_AF=0.74;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8263;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 37730368 rs12541651 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.42;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=0.9971;ERATE=0.0135;EUR_AF=0.69;LDAF=0.6324;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0218;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 37730456 rs7341564 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.51;AMR_AF=0.30;AN=2;ASN_AF=0.10;AVGPOST=0.9975;ERATE=0.0075;EUR_AF=0.35;LDAF=0.3138;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0119;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 37823607 rs45563241 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0003;LDAF=0.0114;RSQ=0.9764;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 37963239 rs2073351 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0997;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 37985897 rs2843740 A G 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8505;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 37996327 rs2275957 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0896;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 38003787 rs2720050 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9840;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 38005835 rs2229620 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9959;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 38027483 rs3015656 G C 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.0041;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.13;LDAF=0.1079;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 38385795 rs2445020 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.80;AMR_AF=0.88;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8762;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 38677322 rs34235313 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0277;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 38835456 rs4733960 T C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8149;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 38835666 rs4733961 T C 100 PASS AA=T;AC=1;AF=0.82;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8154;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 38845602 rs62504414 T G 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0321;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 38848850 rs4733895 C T 100 PASS AA=T;AC=1;AF=0.85;AFR_AF=0.82;AMR_AF=0.87;AN=2;ASN_AF=0.94;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8495;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 38851204 rs28626007 A C 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2797;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 38911953 rs9643905 C A 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.82;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8391;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 38959498 rs4733905 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2286;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 39004620 rs35335280 A T 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.15;AMR_AF=0.34;AN=2;ASN_AF=0.20;AVGPOST=0.9913;ERATE=0.0022;EUR_AF=0.29;LDAF=0.2474;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 39022522 rs10088854 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.22;AMR_AF=0.52;AN=2;ASN_AF=0.71;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5104;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 39080632 rs7845771 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9606;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 39463823 rs13268577 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2824;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 39496029 rs12708194 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.71;AMR_AF=0.61;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.65;LDAF=0.5570;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 39505826 rs3735880 C A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.46;AMR_AF=0.67;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.76;LDAF=0.5474;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 39521419 rs6988389 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.73;AMR_AF=0.76;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.6773;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 39525750 rs2305392 C A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.72;AMR_AF=0.69;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6038;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 39785321 rs3739319 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.34;AMR_AF=0.37;AN=2;ASN_AF=0.54;AVGPOST=0.9975;ERATE=0.0007;EUR_AF=0.40;LDAF=0.4193;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.36,-0.00 +8 40011079 rs6474226 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9945;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 40554742 rs11781516 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.64;AMR_AF=0.56;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5403;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 41166523 rs184528079 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0056;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 41348534 rs3780023 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.32;AMR_AF=0.26;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1742;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +8 41355096 rs17656952 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0983;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 41478569 rs11545514 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.09;AN=2;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0556;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.69,-0.10 +8 41519462 rs515071 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.76;AMR_AF=0.74;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7779;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 41525914 rs750625 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.21;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2006;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 41529856 rs508112 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 41553835 rs2304883 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.30;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3100;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 41566438 rs2304877 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0494;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 41571802 rs16890776 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0512;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.22 +8 41580607 rs7826127 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.52;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3514;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 41580636 rs17661203 T C 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0302;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 41583441 rs6982971 T C 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0311;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 41585571 rs1872877 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.62;AMR_AF=0.58;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5412;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 42175303 rs2294100 A T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.30;AMR_AF=0.90;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7582;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 42587301 rs75384358 A G 100 PASS AA=a;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0009;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 42959007 rs5024011 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 43025712 rs201193888 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 43054553 rs1126058 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9951;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 48885436 rs762679 T A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.96;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.83;LDAF=0.9153;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 48955549 rs200281870 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0006;RSQ=0.7057;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +8 49643243 rs966703 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.91;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7957;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 51571172 rs1911830 G A 100 PASS AA=g;AC=1;AF=0.58;AFR_AF=0.25;AMR_AF=0.65;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5804;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 52321243 rs2977020 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.73;AMR_AF=0.82;AN=2;ASN_AF=0.92;AVGPOST=0.9969;ERATE=0.0005;EUR_AF=0.85;LDAF=0.8367;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.67,-0.01 +8 52366200 rs6473599 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.43;AMR_AF=0.90;AN=2;ASN_AF=0.68;AVGPOST=0.9977;ERATE=0.0024;EUR_AF=0.93;LDAF=0.7481;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 52412226 rs755311 G T 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.08;AMR_AF=0.56;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.61;LDAF=0.4848;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 52733050 rs12335014 T A 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.06;AMR_AF=0.60;AN=2;ASN_AF=0.44;AVGPOST=0.9966;ERATE=0.0017;EUR_AF=0.60;LDAF=0.4373;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +8 52746153 rs9298462 C T 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.06;AMR_AF=0.61;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4433;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 53537316 rs1129660 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3226;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 53555069 rs2305427 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3264;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 53570529 rs12708142 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 53586706 rs17337252 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5474;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 54141824 rs963549 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.52;AMR_AF=0.26;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2322;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 54142157 rs702764 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.53;AMR_AF=0.26;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0026;EUR_AF=0.14;LDAF=0.2321;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 54745538 rs6991513 C G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=0.88;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.78;LDAF=0.8582;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 55539395 rs2293869 A T 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2600;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 55542540 rs61739567 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.29;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2359;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 56686224 rs1818 T C 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.70;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8729;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 56863151 rs7813271 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.40;AMR_AF=0.21;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1897;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 56985814 rs1050403 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.19;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1102;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 56986737 rs2976044 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.41;AMR_AF=0.27;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2194;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 57026229 rs35392772 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.15;LDAF=0.0796;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 57078933 rs35883156 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1189;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 59411042 rs2162459 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.39;AMR_AF=0.66;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 59484899 rs7827910 T A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.50;AMR_AF=0.28;AN=2;ASN_AF=0.57;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=0.35;LDAF=0.4315;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 59498190 rs12677290 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.30;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4570;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 59508076 rs16923588 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.69;AMR_AF=0.33;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4909;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 59511756 rs10111180 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.21;AMR_AF=0.27;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3395;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 59512334 rs2680903 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9365;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 59515756 rs2255834 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.26;AMR_AF=0.58;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4593;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 59547804 rs10113830 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2464;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 59872615 rs3780001 T G 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.03;AMR_AF=0.29;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2665;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 61193570 rs74792169 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.18;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.11;LDAF=0.1680;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 61655690 rs7836586 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.70;AMR_AF=0.78;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7962;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 61707725 rs4540437 G A 100 PASS AA=A;AC=1;AF=0.86;AFR_AF=0.95;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8565;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 61732521 rs6471902 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.79;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8200;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 61750860 rs7844902 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.78;AMR_AF=0.79;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8067;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 62416074 rs7005617 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9776;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 62438530 rs4738904 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9785;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 62475276 rs3802286 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.76;AMR_AF=0.81;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7609;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 62556590 rs7825861 C T 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.18;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1823;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 62563718 rs7016408 G T 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.18;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1828;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 62595068 rs3750278 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.83;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8181;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 63942717 rs4617146 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2678;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 63976754 rs4501570 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.86;AMR_AF=0.61;AN=2;ASN_AF=0.77;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.45;LDAF=0.6524;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 67341938 rs3739336 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0755;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 67357690 rs1025228 G T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6312;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 67372743 rs3824263 G T 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1024;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 67813633 rs2358008 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9514;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 67925380 rs78625536 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0169;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 68200276 rs76811394 T C 100 PASS AA=T;AC=1;AF=0.03;AMR_AF=0.01;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0002;LDAF=0.0281;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 68396915 rs17343819 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.13;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0851;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 68864728 rs61753697 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.03;AMR_AF=0.37;AN=2;ASN_AF=0.52;AVGPOST=0.9961;ERATE=0.0017;EUR_AF=0.31;LDAF=0.3108;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-3.40 +8 68965521 rs10504417 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.81;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5201;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 68968166 rs1434774 C A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.86;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5306;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 68968171 rs1434775 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.86;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 68972907 rs1369164 C G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.25;AMR_AF=0.33;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 69104521 rs6472389 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.92;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +8 70588878 rs10448034 T C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1100;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 70744812 rs3750266 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.69;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4439;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 70964399 rs10089937 A G 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.62;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6402;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 70967607 rs3750225 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.86;AMR_AF=0.63;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6993;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 71037131 rs3736661 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0580;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71039118 rs2228591 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0601;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71040892 rs79801151 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.05;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0674;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71041229 rs111631661 C A 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0161;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71071695 rs2272670 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.31;AMR_AF=0.64;AN=2;ASN_AF=0.34;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5210;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71075113 rs72663933 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0616;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71495847 rs61065292 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0462;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71499109 rs61412217 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0462;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71510093 rs268626 A G 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.88;AMR_AF=0.71;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8240;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 71512349 rs268592 A T 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.37;AMR_AF=0.54;AN=2;ASN_AF=0.67;AVGPOST=0.9964;ERATE=0.0035;EUR_AF=0.77;LDAF=0.6141;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 71550058 rs268571 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.88;AMR_AF=0.71;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8240;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 71550144 rs35571096 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.43;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1856;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 71593425 rs6991329 G A 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.23;AMR_AF=0.31;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3023;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 72111599 rs10103397 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.76;AVGPOST=0.9992;ERATE=0.0016;EUR_AF=0.31;LDAF=0.4604;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72111678 rs10090382 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4593;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72127764 rs3735935 C A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4196;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72129009 rs4738118 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2747;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72938357 rs2305018 A C 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.26;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2519;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72942210 rs3824151 G T 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.64;AMR_AF=0.71;AN=2;ASN_AF=0.70;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6474;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.67,-0.01 +8 72948588 rs13280644 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0439;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 72962985 rs2120474 G A 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.64;AMR_AF=0.71;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6481;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 72963109 rs35427625 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0786;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 72963135 rs1025927 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0786;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 72965043 rs13271151 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0786;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 72965973 rs3735942 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.36;AMR_AF=0.52;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4288;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72966002 rs3735943 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.47;AMR_AF=0.62;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5617;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72966124 rs3735944 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.47;AMR_AF=0.62;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5620;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72971579 rs28736596 A C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.36;AMR_AF=0.52;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4289;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72975801 rs7819749 T G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.96;AMR_AF=0.75;AN=2;ASN_AF=0.99;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.62;LDAF=0.8152;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 72981327 rs1811457 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.90;AMR_AF=0.74;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7999;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 73480140 rs41272419 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.03;AN=2;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0262;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 73848139 rs3735829 A T 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.25;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.2879;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 73850203 rs11782118 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.20;AMR_AF=0.34;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2720;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 74204653 rs2070764 A T 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.46;AMR_AF=0.48;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4388;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 74527996 rs949493 C T 100 PASS AA=T;AC=1;AF=0.88;AFR_AF=0.76;AMR_AF=0.81;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.8743;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 74890961 rs62509309 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.56;AMR_AF=0.58;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4634;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 74893452 rs61734099 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0325;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 74893821 rs1053079 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.45;AMR_AF=0.37;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2491;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 74893850 rs1053077 C G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.45;AMR_AF=0.37;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2491;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 74893880 rs7108 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.56;AMR_AF=0.58;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4621;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 74917084 rs6472812 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9905;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 74941183 rs11466003 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0270;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 75227885 rs16938872 G A 100 PASS AA=G;AC=2;AF=0.15;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1489;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 75262798 rs7828201 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 75262841 rs4321999 G A 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 75275312 rs4463412 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 77895865 rs10087163 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.98;LDAF=0.9918;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 79601420 rs1872072 T C 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.35;AMR_AF=0.78;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6895;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 79610710 rs1054283 A G 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.50;AMR_AF=0.80;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7262;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 80678865 rs960978 C A 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2829;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 81400021 rs183925020 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.05;AN=2;AVGPOST=0.9993;ERATE=0.0004;LDAF=0.0085;RSQ=0.9600;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 81733727 rs3907424 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.44;AMR_AF=0.16;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1759;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 82355621 rs6473276 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.75;AMR_AF=0.46;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.5425;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 82357112 rs2229015 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.3720;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 82627395 rs58900840 A C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.39;AMR_AF=0.32;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.4492;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 82629447 rs62512330 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3739;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 82633452 rs2130263 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.59;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2355;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.08 +8 82727515 rs2635482 C T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2733;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 82727520 rs2600606 A T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2733;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 82727569 rs16909651 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1604;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 82751822 rs78592277 T G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2734;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 86171816 rs4739699 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 86351997 rs20571 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.29;AMR_AF=0.51;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.62;LDAF=0.4896;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 86389403 rs703 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.72;AMR_AF=0.56;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.62;LDAF=0.6024;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 87060672 rs3802225 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.37;LDAF=0.4205;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 87076150 rs981711 C G 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.57;AMR_AF=0.70;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7676;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 87076520 rs6998760 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.37;LDAF=0.3267;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 87155094 rs1483779 T C 100 PASS AA=T;AC=1;AF=0.86;AFR_AF=0.94;AMR_AF=0.75;AN=2;ASN_AF=0.88;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.86;LDAF=0.8650;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 87165011 rs10504820 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1321;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 87226700 rs9656982 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.10;LDAF=0.1380;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 87229948 rs4621787 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9977;ERATE=0.0034;EUR_AF=0.10;LDAF=0.1454;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 87241847 rs7814198 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.43;AMR_AF=0.39;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3675;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 87474085 rs7460650 A G 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.16;AMR_AF=0.45;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3446;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 87497176 rs11539113 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.16;AMR_AF=0.45;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3457;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 87520894 rs68008113 C A 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.15;AMR_AF=0.45;AN=2;ASN_AF=0.54;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3423;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +8 87666251 rs4961206 T G 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6595;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 87679303 rs6471482 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9319;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 88886024 rs201620366 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 90781953 rs40377 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.70;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5653;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 90955624 rs3736639 T A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3481;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 90958422 rs1061302 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3268;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 90958530 rs2308962 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3487;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 90967711 rs709816 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.84;AMR_AF=0.54;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.5750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 90970935 rs2234744 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3268;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 90990479 rs1805794 C G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3319;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 90995019 rs1063045 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3488;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 91064036 rs1476590 G C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.84;AMR_AF=0.54;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.35;LDAF=0.5756;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 91940446 rs1002583 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.43;AMR_AF=0.49;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4671;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 91953138 rs7018395 G A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.17;AMR_AF=0.44;AN=2;ASN_AF=0.59;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3595;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 92021036 rs2054805 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.49;AMR_AF=0.51;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.71;LDAF=0.5136;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 92083424 rs11557571 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.21;AMR_AF=0.43;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4785;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 92090573 rs11786324 G C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.64;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.63;LDAF=0.6016;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 92307978 rs10107822 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.49;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6047;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 92364100 rs10109254 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.32;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2153;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 92972780 rs2977676 G A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.88;AMR_AF=0.67;AN=2;ASN_AF=0.85;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.46;LDAF=0.6923;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0187;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 93088151 rs13252280 C T 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.55;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7848;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 94715965 rs6997642 C G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.88;AMR_AF=0.62;AN=2;ASN_AF=0.55;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.67;LDAF=0.6785;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 94746698 rs3133974 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.37;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2731;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 94794620 rs3097427 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.59;LDAF=0.7164;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 94808165 rs3134031 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.80;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9982;ERATE=0.0056;EUR_AF=0.61;LDAF=0.6892;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 94935937 rs4735258 T C 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.42;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95143186 rs1051623 C G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.85;AMR_AF=0.82;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7920;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95158259 rs2251734 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.39;AMR_AF=0.41;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2843;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95161102 rs35792427 G A 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1258;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95172403 rs11786634 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1454;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 95186295 rs2514813 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.93;AMR_AF=0.62;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6718;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 95188850 rs2243518 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=0.61;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7687;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95188916 rs67774240 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.35;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1070;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 95262820 rs75334292 G C 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.14;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0736;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 95419698 rs2291439 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.35;AMR_AF=0.50;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4195;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 95470697 rs2919660 C A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.44;AMR_AF=0.51;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4465;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 95524209 rs3099412 C T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.88;AMR_AF=0.74;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7431;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 95541302 rs957448 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.44;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3839;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 95547119 rs2304764 T G 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.23;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9885;ERATE=0.0133;EUR_AF=0.34;LDAF=0.3831;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 95655596 rs72676907 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0035;AVGPOST=0.9965;ERATE=0.0005;EUR_AF=0.22;LDAF=0.0935;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 95658526 rs60139063 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.23;AMR_AF=0.76;AN=2;ASN_AF=0.75;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6222;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95677132 rs1426171 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.61;AMR_AF=0.75;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7303;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95680229 rs1549466 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.06;AMR_AF=0.37;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3564;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95690579 rs12677519 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.26;AMR_AF=0.56;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5151;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 95746833 rs7815731 C G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.74;AMR_AF=0.57;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5576;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 95841185 rs146049046 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 95885742 rs200662837 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 96070181 rs2678832 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.80;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9231;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 97256341 rs6993518 T A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.52;AMR_AF=0.33;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3851;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 97258719 rs1878638 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.52;AMR_AF=0.33;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3801;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 97321898 rs961075 T A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.54;AMR_AF=0.33;AN=2;ASN_AF=0.31;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.41;LDAF=0.4016;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 97342536 rs2280263 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.25;AMR_AF=0.48;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4735;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +8 97614625 rs3816208 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1093;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 97847358 rs1864384 G T 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.34;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6226;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 98289986 rs28669903 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.39;AMR_AF=0.67;AN=2;ASN_AF=0.66;AVGPOST=0.9918;ERATE=0.0005;EUR_AF=0.64;LDAF=0.5941;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.40 +8 98673250 rs16896067 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.16;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2400;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 98787994 rs2449510 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.97;AMR_AF=0.64;AN=2;ASN_AF=0.80;AVGPOST=0.9912;ERATE=0.0008;EUR_AF=0.62;LDAF=0.7451;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +8 98788033 rs2449509 G C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.77;AVGPOST=0.9645;ERATE=0.0044;EUR_AF=0.61;LDAF=0.6955;RSQ=0.9370;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +8 99115144 rs2447497 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.12;LDAF=0.1494;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 99140544 rs2447508 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +8 99149189 rs182805220 G A 100 PASS AA=G;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0023;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 99162888 rs4735530 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.98;AMR_AF=0.65;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6678;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 99205612 rs3735887 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.55;AMR_AF=0.63;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5612;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 99208190 rs3779721 A C 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.31;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3821;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 99208244 rs7010905 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1956;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100133706 rs7460625 T G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.6645;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100654319 rs144257406 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100844758 rs36074608 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2062;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 100861146 rs34513504 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.45;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=0.17;LDAF=0.2286;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100865836 rs6468694 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1316;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100899793 rs1130569 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.51;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2491;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100904277 rs1130474 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2376;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100975002 rs6468700 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9970;RSQ=0.9320;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 100994126 rs73274939 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1054;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100994389 rs6468704 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.83;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=0.9968;ERATE=0.0007;EUR_AF=0.21;LDAF=0.3457;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 100999668 rs76193261 T C 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0553;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 101011612 rs3133711 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0389;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 101020572 rs3101323 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0412;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 101053980 rs922207 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5982;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 101059662 rs2980542 G A 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.51;AMR_AF=0.62;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5913;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 101117554 rs1471294 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.04;AMR_AF=0.42;AN=2;ASN_AF=0.48;AVGPOST=0.9921;ERATE=0.0044;EUR_AF=0.39;LDAF=0.3398;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 101149939 rs2453629 G C 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.12;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=0.9963;ERATE=0.0029;EUR_AF=0.37;LDAF=0.3564;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 101153024 rs1460934 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.71;AMR_AF=0.67;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6621;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 101196824 rs2453656 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4530;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +8 101225559 rs2514681 C G 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.18;AMR_AF=0.41;AN=2;ASN_AF=0.50;AVGPOST=0.9808;ERATE=0.0018;EUR_AF=0.37;LDAF=0.3721;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.01,-0.47,-0.18 +8 101232701 rs2919471 T C 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6822;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 101252680 rs6511 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.72;AMR_AF=0.72;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6353;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 101253184 rs1788190 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.04;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3336;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 101586133 rs2022923 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.62;AMR_AF=0.39;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4320;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 101661603 rs7016136 T G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.57;AMR_AF=0.55;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4867;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 101661634 rs12681977 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.54;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.30;LDAF=0.4355;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 101730073 rs72681443 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.34;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=0.9915;ERATE=0.1301;EUR_AF=0.25;LDAF=0.2630;RSQ=0.9754;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 102504974 rs515622 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9620;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0131;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 102678798 rs10093032 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.48;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3858;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 102678972 rs3735713 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.48;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3853;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 103220351 rs59015244 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 103291018 rs140599016 A C 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 103572992 rs3018444 C G 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.61;AMR_AF=0.90;AN=2;ASN_AF=0.66;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7745;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 103573001 rs3018445 C G 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.31;AVGPOST=0.9979;ERATE=0.0019;EUR_AF=0.64;LDAF=0.4905;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 103573006 rs2916569 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.67;AMR_AF=0.54;AN=2;ASN_AF=0.32;AVGPOST=0.9917;ERATE=0.0119;EUR_AF=0.65;LDAF=0.5503;RSQ=0.9878;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 103663814 rs4734653 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.02;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0340;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 103851052 rs1062048 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1782;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 104312341 rs3736047 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.32;AMR_AF=0.50;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 104337096 rs3808554 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.28;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4584;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 104337367 rs3808553 A C 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.28;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4589;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 104343686 rs1053917 G A 100 PASS AA=g;AC=2;AF=0.45;AFR_AF=0.25;AMR_AF=0.48;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4488;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 104390224 rs2687364 T A 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.31;AMR_AF=0.53;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5054;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 104394744 rs3098233 T C 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.78;AMR_AF=0.75;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.76;LDAF=0.7358;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 105261725 rs2028945 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.53;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.08;LDAF=0.2355;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 105263979 rs10461 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.56;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4983;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 105367096 rs2458431 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.39;AMR_AF=0.69;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.6010;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 106573578 rs3735953 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.92;AMR_AF=0.64;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6742;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 107754473 rs1681904 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.20;AMR_AF=0.50;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3839;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 107754583 rs1784468 T G 100 PASS AA=a;AC=2;AF=0.90;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.83;LDAF=0.9036;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +8 107782065 rs13259080 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1904;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 107782395 rs11996466 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.32;AN=2;ASN_AF=0.49;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.34;LDAF=0.4240;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 108970367 rs601558 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.12;AMR_AF=0.63;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5370;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 109094747 rs10955475 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 109215368 rs630492 T C 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.55;AMR_AF=0.39;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.47;LDAF=0.4799;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 109254003 rs667742 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.58;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5457;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 109455863 rs3737502 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2816;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +8 110301944 rs2980616 A C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.39;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4278;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110301951 rs2980617 C A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.39;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4278;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110301998 rs2980618 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3784;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110302047 rs2980619 T G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.86;AMR_AF=0.68;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6202;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110397738 rs7016085 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3273;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110410693 rs188649530 C A 100 PASS AA=C;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9992;ERATE=0.0004;LDAF=0.0013;RSQ=0.7439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 110412519 rs1379369 G A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.69;AMR_AF=0.63;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5482;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110413762 rs964307 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3206;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110413824 rs2061294 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5531;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110416813 rs1457286 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.69;AMR_AF=0.63;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5475;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110420245 rs16879470 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3237;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110420384 rs13254245 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3231;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110420429 rs13252234 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3231;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110437384 rs4735133 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.74;AMR_AF=0.63;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.51;LDAF=0.5585;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110455321 rs1673408 C A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.54;AMR_AF=0.64;AN=2;ASN_AF=0.43;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5152;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110460488 rs1673407 G T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.43;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5585;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110461518 rs1673405 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.43;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5582;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.66,-0.01,-5.00 +8 110465060 rs1673404 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.41;AMR_AF=0.60;AN=2;ASN_AF=0.43;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4769;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110472066 rs17368310 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0480;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110473966 rs71506390 A T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.35;AMR_AF=0.58;AN=2;ASN_AF=0.42;AVGPOST=0.9729;ERATE=0.0236;EUR_AF=0.45;LDAF=0.4372;RSQ=0.9597;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110476993 rs1673398 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.36;AMR_AF=0.61;AN=2;ASN_AF=0.44;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4698;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110487512 rs12549027 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0494;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110489620 rs1783148 A T 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3651;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110491840 rs1783147 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3664;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110491877 rs1630942 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3661;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110495192 rs2844254 T A 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3657;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110505886 rs2607628 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3652;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110516527 rs720139 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3652;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110522965 rs2607624 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2605;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110527569 rs1783167 A T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2604;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110530774 rs1783169 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.31;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2258;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110534512 rs1563578 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2612;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110539186 rs1783174 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2605;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110542298 rs1617259 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.14;LDAF=0.2605;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110542337 rs1617350 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.14;LDAF=0.2599;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.21,-0.00,-5.00 +8 110566184 rs2703377 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.22;LDAF=0.2301;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 110588176 rs33970535 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0267;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 113842039 rs10106945 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.91;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8506;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 114186003 rs2219898 T C 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.47;AMR_AF=0.54;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.4625;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 114388945 rs17609383 G A 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.24;AMR_AF=0.46;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3697;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 116599199 rs2293889 T G 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.95;AMR_AF=0.68;AN=2;ASN_AF=0.83;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.59;LDAF=0.7469;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 117782385 rs4514005 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.80;AMR_AF=0.69;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6356;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 117783975 rs16888728 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.42;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1535;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 117864992 rs115102885 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0202;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-1.39,-0.02,-5.00 +8 117869498 rs2921787 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.38;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1362;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 118165149 rs6469675 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.77;AMR_AF=0.24;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4016;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 118184783 rs13266634 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2822;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 118533312 rs11990107 A G 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.28;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1849;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 119391791 rs5020517 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.87;AMR_AF=0.57;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6225;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 119936669 rs1804854 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.29;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0690;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 119941173 rs3134046 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.91;AMR_AF=0.90;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9160;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 119964016 rs3102734 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.05;LDAF=0.1067;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-1.25,-0.02,-5.00 +8 119964052 rs2073618 G C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.89;AMR_AF=0.51;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6436;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.81,-0.07,-5.00 +8 120114645 rs73327239 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.12;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0288;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 120429024 rs2279112 G A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.58;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.22;LDAF=0.2872;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-1.90,-0.01,-5.00 +8 120569877 rs2305129 T G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1092;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 120577030 rs3816330 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.22;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1060;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 120594802 rs4871364 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.45;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2162;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 120596023 rs10283100 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.95;LDAF=0.9747;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 120602908 rs935359 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9436;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 120602914 rs935360 C T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.83;AMR_AF=0.49;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5772;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 120608229 rs145333587 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0096;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 120613747 rs2289888 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.68;AMR_AF=0.44;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5361;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 120886112 rs145341556 G A 100 PASS AA=G;AC=1;AF=0.0023;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0024;RSQ=0.9662;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 120940652 rs16893299 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.38;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2107;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 120940867 rs28461628 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.38;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2109;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 121015361 rs6469887 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.41;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1307;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 121019040 rs56833210 C A 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.42;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1330;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 121209000 rs2305597 A C 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.46;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2852;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 121210069 rs2305598 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.80;AMR_AF=0.61;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6119;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 121211847 rs2326483 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.20;AMR_AF=0.37;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2920;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 121215991 rs2305600 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.79;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.45;LDAF=0.6083;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 121259843 rs2305604 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.41;AMR_AF=0.39;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4026;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 121267617 rs993823 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.88;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7715;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 121293331 rs1563388 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.85;AMR_AF=0.62;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 121296045 rs16893819 A G 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.31;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.16;LDAF=0.1527;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 121309862 rs2219241 A T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.92;AMR_AF=0.63;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6621;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +8 121344388 rs115085969 G A 100 PASS AA=g;AC=1;AF=0.0018;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0018;LDAF=0.0020;RSQ=0.9304;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 121528385 rs35511242 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0969;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 121534874 rs75728398 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0315;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 121560963 rs12335252 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0051;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 123964080 rs73335724 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0201;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124138855 rs16898012 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2827;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124142489 rs2272724 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.43;AMR_AF=0.40;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3309;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124154697 rs10101626 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.26;AMR_AF=0.14;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124164171 rs34994118 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0210;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124238872 rs59113457 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.14;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0329;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 124238903 rs113594427 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 124333429 rs148512784 A T 100 PASS AA=A;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0017;RSQ=0.9237;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +8 124357253 rs16898247 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.47;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1257;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 124359405 rs16898248 A C 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0238;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 124383864 rs79319751 A T 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0243;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 124384085 rs16898259 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0252;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 124448689 rs9297669 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.83;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9109;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124516813 rs73330050 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.30;AMR_AF=0.10;AN=2;AVGPOST=0.9986;ERATE=0.0013;EUR_AF=0.05;LDAF=0.1029;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124525483 rs3739287 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2107;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124526607 rs2294088 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4507;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.86 +8 124553222 rs4871385 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1369;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124658210 rs16898671 C T 100 PASS AA=c;AC=1;AF=0.14;AFR_AF=0.20;AMR_AF=0.07;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1424;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124663769 rs10109736 A T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.87;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9026;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124664130 rs11780509 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.64;AMR_AF=0.69;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7217;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124664167 rs11784192 T C 100 PASS AA=t;AC=2;AF=0.75;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.86;LDAF=0.7481;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124664792 rs7387544 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.64;AMR_AF=0.69;AN=2;ASN_AF=0.70;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7211;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124664873 rs7387792 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.61;AVGPOST=0.9625;ERATE=0.0259;EUR_AF=0.72;LDAF=0.6317;RSQ=0.9457;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124664874 rs7386562 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.51;AMR_AF=0.67;AN=2;ASN_AF=0.61;AVGPOST=0.9595;ERATE=0.0272;EUR_AF=0.72;LDAF=0.6314;RSQ=0.9407;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124665211 rs7387855 C T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7486;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124693444 rs3739283 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.87;AMR_AF=0.74;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.69;LDAF=0.6630;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124693641 rs4314634 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.28;AMR_AF=0.36;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2449;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124696867 rs2294015 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.93;AMR_AF=0.62;AN=2;ASN_AF=0.51;AVGPOST=0.9981;ERATE=0.0040;EUR_AF=0.56;LDAF=0.6417;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124710729 rs2294013 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2450;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124749610 rs6470179 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9351;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124824826 rs1946586 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.83;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=0.9584;ERATE=0.0756;EUR_AF=0.90;LDAF=0.8828;RSQ=0.8291;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 124985780 rs10102622 A C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.24;AMR_AF=0.32;AN=2;ASN_AF=0.30;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3293;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 124987478 rs7465584 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.39;AVGPOST=0.9943;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4253;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 125035788 rs4358790 G C 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.70;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5734;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125061895 rs4870887 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.49;AMR_AF=0.47;AN=2;ASN_AF=0.51;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4899;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125072426 rs4483140 T C 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.87;AMR_AF=0.76;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8089;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125076589 rs7012186 T G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.77;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.86;LDAF=0.7778;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125083869 rs116511443 C T 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0142;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125107201 rs6470219 G A 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.62;AMR_AF=0.71;AN=2;ASN_AF=0.67;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7291;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125107207 rs74695869 C T 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.75;AMR_AF=0.72;AN=2;ASN_AF=0.70;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7694;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125463250 rs3812475 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5521;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125498547 rs3812471 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5479;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125568175 rs3793395 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.36;AMR_AF=0.07;AN=2;ASN_AF=0.21;AVGPOST=0.9966;ERATE=0.0231;EUR_AF=0.10;LDAF=0.1831;RSQ=0.9923;SNPSOURCE=EXOME;THETA=0.0112;VT=SNP GT:DS:GL 0|1:1.000:-1.83,-0.01,-5.00 +8 125570144 rs4870903 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9866;ERATE=0.0122;EUR_AF=0.71;LDAF=0.6451;RSQ=0.9789;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 0|1:1.000:-3.52,-0.00,-5.00 +8 125575047 rs16899702 G T 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.22;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0530;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125987990 rs116179294 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125988688 rs78372332 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125989432 rs78004199 A T 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125989649 rs10105106 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.21;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0626;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 125989698 rs16900167 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1645;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 125989852 rs10107774 A T 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.21;AMR_AF=0.05;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0628;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 126021164 rs2288312 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2287;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.36,-0.00,-5.00 +8 126044593 rs34569226 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0123;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 126059605 rs79810716 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0247;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 126062905 rs148936723 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0051;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 126068886 rs2303522 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.17;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2418;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 126073472 rs16900302 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 126075757 rs16900312 T C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 126079867 rs10429323 T C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 126079969 rs16900335 C T 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0237;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 126085363 rs10102230 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.75;AMR_AF=0.43;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4469;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 126085586 rs12546285 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2285;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 126443534 rs3750182 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9791;ERATE=0.0006;EUR_AF=0.12;LDAF=0.1492;RSQ=0.9329;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.78 +8 126445537 rs2235110 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.62;AMR_AF=0.30;AN=2;ASN_AF=0.64;AVGPOST=0.9942;ERATE=0.0009;EUR_AF=0.28;LDAF=0.4544;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 126445544 rs2235109 C A 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.60;AMR_AF=0.28;AN=2;ASN_AF=0.63;AVGPOST=0.9865;ERATE=0.0159;EUR_AF=0.26;LDAF=0.4362;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 128753254 rs2070583 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0582;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0137;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 130760850 rs4144738 A G 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.93;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6609;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 130761030 rs4144736 G C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.93;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6622;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 130788548 rs4733741 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.91;AMR_AF=0.51;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.6010;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 131070348 rs76278922 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0247;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 131124559 rs966185 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.25;AMR_AF=0.37;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4685;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 131127831 rs2305513 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.46;LDAF=0.4434;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 131165086 rs3935174 A T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4246;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 131916318 rs11781997 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.23;AMR_AF=0.54;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5023;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 131921956 rs12547243 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.36;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6101;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 132002770 rs13278912 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.66;AMR_AF=0.23;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2596;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 132002814 rs11991124 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.66;AMR_AF=0.23;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2606;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 132980709 rs6471017 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.84;LDAF=0.9131;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 132997353 rs10085968 T C 100 PASS AA=T;AC=2;AF=0.19;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.33;AVGPOST=0.9969;ERATE=0.0023;EUR_AF=0.20;LDAF=0.1885;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 133023163 rs4736529 G C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.84;LDAF=0.9008;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 133053309 rs7386782 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.73;AMR_AF=0.73;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7417;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 133053318 rs7386783 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.73;AMR_AF=0.73;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.71;LDAF=0.7417;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 133150103 rs2469515 C T 100 PASS AA=C;AC=2;AF=0.12;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9980;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1246;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0113;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 133723166 rs1895807 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.92;AMR_AF=0.40;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5996;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 133740239 rs71526264 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.09;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1842;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 133811435 rs2244885 T A 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.47;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=0.9954;ERATE=0.0076;EUR_AF=0.39;LDAF=0.3909;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 133844508 rs16904746 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.46;AMR_AF=0.44;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3913;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 133858009 rs756201 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.52;AMR_AF=0.45;AN=2;ASN_AF=0.37;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4340;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 133858017 rs142049529 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0007;RSQ=0.6980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 133880334 rs180203 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9945;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 133900252 rs180223 T G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.72;AMR_AF=0.59;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6394;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 133900386 rs2069550 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.71;AMR_AF=0.59;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6372;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 133909974 rs853326 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.71;AMR_AF=0.58;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6353;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 133919178 rs62514139 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.80 +8 133984058 rs2076740 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.50;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3294;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 133985019 rs1403488 G A 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.19;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1129;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 134108453 rs2069568 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.19;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.49;LDAF=0.3748;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 134108546 rs56541861 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.84;AMR_AF=0.53;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5182;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 134125682 rs1133076 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.83;AMR_AF=0.41;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5283;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 134144113 rs2294024 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.56;AMR_AF=0.53;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.48;LDAF=0.4246;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 134225068 rs10089461 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.45;AMR_AF=0.40;AN=2;ASN_AF=0.59;AVGPOST=0.9937;ERATE=0.0014;EUR_AF=0.47;LDAF=0.4846;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.47 +8 134225434 rs13258091 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 134239770 rs3739261 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2944;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 134256559 rs2233341 G T 100 PASS AA=G;AC=2;AF=0.10;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1029;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 134271506 rs2233327 G A 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0014;EUR_AF=0.17;LDAF=0.1872;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 134474148 rs1048479 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.38;AMR_AF=0.64;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.51;LDAF=0.4699;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 135524797 rs3739429 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.36;AMR_AF=0.10;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1995;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 135577530 rs6999469 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3062;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 135577533 rs6988653 T A 100 PASS AA=T;AC=2;AF=0.19;AFR_AF=0.21;AMR_AF=0.36;AN=2;ASN_AF=0.01;AVGPOST=0.9612;ERATE=0.0133;EUR_AF=0.25;LDAF=0.2041;RSQ=0.9309;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +8 135602581 rs3739425 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.20;LDAF=0.3081;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 135612745 rs894344 A G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.44;AMR_AF=0.60;AN=2;ASN_AF=0.55;AVGPOST=0.9984;ERATE=0.0017;EUR_AF=0.43;LDAF=0.4910;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 135614705 rs3739423 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.78;AMR_AF=0.79;AN=2;ASN_AF=0.92;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8003;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 135614972 rs3739422 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.33;AMR_AF=0.40;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3854;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 135649848 rs12541381 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.33;AVGPOST=0.9783;ERATE=0.0490;EUR_AF=0.26;LDAF=0.2388;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0083;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 136560952 rs12545587 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5798;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 136561153 rs11166602 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.30;AMR_AF=0.63;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5978;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 136659195 rs28621864 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.13;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3832;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 139149406 rs6577876 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.29;AMR_AF=0.24;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1898;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 139149510 rs6577877 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8724;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 139151375 rs4634694 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5748;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +8 139158317 rs7006664 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8751;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 139164192 rs3750306 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3948;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139164570 rs3750307 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1988;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 139165068 rs3763590 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.24;AMR_AF=0.34;AN=2;ASN_AF=0.55;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3898;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139165272 rs7835712 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.70;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9844;ERATE=0.0013;EUR_AF=0.62;LDAF=0.6720;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 139165273 rs13280444 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.47;AVGPOST=0.9858;ERATE=0.0019;EUR_AF=0.31;LDAF=0.3196;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139165289 rs7835830 T C 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7235;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 139190957 rs4909747 T G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.90;AMR_AF=0.72;AN=2;ASN_AF=0.98;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7980;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139269052 rs1512403 A G 100 PASS AA=A;AC=2;AF=0.24;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2375;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +8 139614436 rs4394401 G A 100 PASS AA=g;AC=1;AF=0.86;AFR_AF=0.84;AMR_AF=0.85;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8629;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139617046 rs12546923 A C 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.31;AMR_AF=0.60;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6170;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139620267 rs11166829 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.33;AMR_AF=0.62;AN=2;ASN_AF=0.70;AVGPOST=0.9929;ERATE=0.0111;EUR_AF=0.78;LDAF=0.6332;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139626176 rs7000261 C G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.85;AMR_AF=0.85;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8673;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139631650 rs7009396 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.58;AMR_AF=0.74;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.86;LDAF=0.7534;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139642974 rs4131277 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.48;AMR_AF=0.24;AN=2;ASN_AF=0.22;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.09;LDAF=0.2354;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 139647262 rs10091563 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.46;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7505;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 139672671 rs3935045 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.20;AMR_AF=0.60;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.76;LDAF=0.5851;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139696635 rs4506262 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9854;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 139697478 rs9644500 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.35;AMR_AF=0.60;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.60;LDAF=0.5868;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 139712323 rs4909835 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 139768085 rs7825723 G A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.70;AMR_AF=0.67;AN=2;ASN_AF=0.86;AVGPOST=0.9990;ERATE=0.0029;EUR_AF=0.62;LDAF=0.7111;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0146;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 139838912 rs2292927 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.87;AMR_AF=0.82;AN=2;ASN_AF=0.76;AVGPOST=0.9989;ERATE=0.0011;EUR_AF=0.82;LDAF=0.8137;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 139889972 rs4736255 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9723;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 140630990 rs2615374 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.89;AMR_AF=0.68;AN=2;ASN_AF=0.72;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7270;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 140998945 rs2614718 G A 100 PASS AA=G;AC=2;AF=0.09;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0873;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.50,-0.01 +8 141262869 rs11166964 C T 100 PASS AA=c;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0741;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 141263015 rs11166965 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0740;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 141310644 rs12549048 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.24;AMR_AF=0.38;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.17;LDAF=0.3257;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 141685641 rs6998337 C A 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.85;AMR_AF=0.82;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7486;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 141840645 rs4246127 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.83;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6106;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 142146708 rs307772 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8657;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +8 142161064 rs3816063 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2893;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 142170884 rs2289001 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2818;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 142176280 rs2241735 G A 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.19;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0016;EUR_AF=0.25;LDAF=0.2117;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 142176507 rs412706 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9971;ERATE=0.0020;EUR_AF=0.61;LDAF=0.6425;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 142185580 rs12675070 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.20;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=0.9980;ERATE=0.0019;EUR_AF=0.34;LDAF=0.2977;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 142199229 rs76337474 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0088;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 142200467 rs1045303 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.20;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=0.9910;ERATE=0.0052;EUR_AF=0.26;LDAF=0.3554;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +8 142204326 rs1045248 C G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.48;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=0.9929;ERATE=0.0043;EUR_AF=0.39;LDAF=0.5054;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 142222261 rs3824235 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.82;AMR_AF=0.62;AN=2;ASN_AF=0.80;AVGPOST=0.9905;ERATE=0.0010;EUR_AF=0.54;LDAF=0.6843;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +8 142222374 rs7017848 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.57;LDAF=0.6828;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 142222445 rs3739238 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.83;AMR_AF=0.64;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6997;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 142225990 rs2288998 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.45;AVGPOST=0.9989;ERATE=0.0082;EUR_AF=0.25;LDAF=0.3166;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 142226108 rs892364 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.43;AMR_AF=0.39;AN=2;ASN_AF=0.38;AVGPOST=0.9932;ERATE=0.0059;EUR_AF=0.28;LDAF=0.3633;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 142228095 rs201592635 T A 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.46;AN=2;ASN_AF=0.59;AVGPOST=0.7959;ERATE=0.0786;EUR_AF=0.35;LDAF=0.4423;RSQ=0.7044;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.150:-5.00,-0.02,-1.42 +8 142228149 rs12679446 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1458;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 142228686 rs3739237 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.13;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1453;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 142228809 rs753779 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.80;AMR_AF=0.65;AN=2;ASN_AF=0.82;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7013;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 142228909 rs753778 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3500;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 142229145 rs3739235 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.80;AMR_AF=0.65;AN=2;ASN_AF=0.81;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.58;LDAF=0.7001;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +8 142229178 rs3739234 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9974;ERATE=0.0007;EUR_AF=0.28;LDAF=0.3494;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.52 +8 142229834 rs2304280 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1499;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 142229891 rs2304279 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6979;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +8 142229946 rs4961256 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.78;AMR_AF=0.65;AN=2;ASN_AF=0.81;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6939;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.06,-0.00 +8 142231636 rs7004350 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.14;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1728;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 142367335 rs10875472 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.86;AMR_AF=0.83;AN=2;ASN_AF=0.54;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.83;LDAF=0.7610;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.24,-0.03 +8 142367400 rs11167054 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.85;AMR_AF=0.83;AN=2;ASN_AF=0.54;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.83;LDAF=0.7586;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +8 142367559 rs11785629 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.48;AMR_AF=0.68;AN=2;ASN_AF=0.54;AVGPOST=0.9938;ERATE=0.0009;EUR_AF=0.74;LDAF=0.6206;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +8 143310815 rs11167136 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.54;AMR_AF=0.52;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4926;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 143381810 rs7822013 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.68;AMR_AF=0.50;AN=2;ASN_AF=0.58;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5342;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 143396446 rs62000450 C T 100 PASS AA=C;AC=2;AF=0.05;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0475;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 143694775 rs28686812 G C 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.61;AMR_AF=0.56;AN=2;ASN_AF=0.40;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5171;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 143695144 rs2234911 G A 100 PASS AA=g;AC=1;AF=0.48;AFR_AF=0.38;AMR_AF=0.44;AN=2;ASN_AF=0.60;AVGPOST=0.9917;ERATE=0.0018;EUR_AF=0.48;LDAF=0.4820;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-0.37,-0.24,-2.92 +8 143695678 rs28403912 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9875;ERATE=0.0017;EUR_AF=0.72;LDAF=0.7794;RSQ=0.9695;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +8 143695681 rs28641083 G C 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9891;ERATE=0.0008;EUR_AF=0.72;LDAF=0.7801;RSQ=0.9748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +8 143808951 rs2585138 C T 100 PASS AA=c;AC=2;AF=0.48;AFR_AF=0.63;AMR_AF=0.40;AN=2;ASN_AF=0.41;AVGPOST=0.9943;ERATE=0.0010;EUR_AF=0.48;LDAF=0.4782;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +8 143809193 rs2257840 C T 100 PASS AA=c;AC=2;AF=0.47;AFR_AF=0.57;AMR_AF=0.39;AN=2;ASN_AF=0.41;AVGPOST=0.9919;ERATE=0.0010;EUR_AF=0.48;LDAF=0.4662;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +8 143867841 rs2717607 C G 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.79;AMR_AF=0.49;AN=2;ASN_AF=0.42;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5349;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +8 143867905 rs2572925 C T 100 PASS AA=c;AC=2;AF=0.36;AFR_AF=0.48;AMR_AF=0.36;AN=2;ASN_AF=0.23;AVGPOST=0.9977;ERATE=0.0007;EUR_AF=0.38;LDAF=0.3598;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.16,-0.03 +8 143921804 rs3750246 C T 100 PASS AA=N;AC=2;AF=0.29;AFR_AF=0.03;AMR_AF=0.39;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2935;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 143921812 rs3750247 A G 100 PASS AA=N;AC=2;AF=0.42;AFR_AF=0.40;AMR_AF=0.42;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4187;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 143957856 rs7822986 G A 100 PASS AA=.;AC=2;AF=0.66;AFR_AF=0.63;AMR_AF=0.60;AN=2;ASN_AF=0.84;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6650;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +8 143958427 rs6387 C T 100 PASS AA=.;AC=2;AF=0.56;AFR_AF=0.34;AMR_AF=0.58;AN=2;ASN_AF=0.75;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5581;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.13,-0.00 +8 143960597 rs5283 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3219;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 143961005 rs6410 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.41;AMR_AF=0.59;AN=2;ASN_AF=0.75;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5779;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 143994321 rs6435 T C 100 PASS AA=.;AC=2;AF=0.66;AFR_AF=0.67;AMR_AF=0.60;AN=2;ASN_AF=0.82;AVGPOST=0.9712;ERATE=0.0146;EUR_AF=0.55;LDAF=0.6528;RSQ=0.9526;SNPSOURCE=LOWCOV,EXOME;THETA=0.0133;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +8 143994702 rs4538 G T 100 PASS AA=.;AC=2;AF=0.59;AFR_AF=0.47;AMR_AF=0.55;AN=2;ASN_AF=0.79;AVGPOST=0.9539;ERATE=0.0094;EUR_AF=0.53;LDAF=0.5796;RSQ=0.9351;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.57,-0.01 +8 143995761 rs4536 C T 100 PASS AA=.;AC=2;AF=0.84;AFR_AF=0.94;AMR_AF=0.91;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8359;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 143996363 rs6418 A G 100 PASS AA=.;AC=2;AF=0.31;AFR_AF=0.15;AMR_AF=0.40;AN=2;ASN_AF=0.27;AVGPOST=0.9697;ERATE=0.0007;EUR_AF=0.39;LDAF=0.3042;RSQ=0.9531;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.70,-0.10 +8 143996539 rs4539 T C 100 PASS AA=.;AC=2;AF=0.36;AFR_AF=0.19;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3639;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +8 143996553 rs4546 G A 100 PASS AA=.;AC=2;AF=0.36;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.48;LDAF=0.3609;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.39,-0.02 +8 144124512 rs11136299 T C 100 PASS AA=t;AC=1;AF=0.38;AFR_AF=0.44;AMR_AF=0.35;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0010;EUR_AF=0.36;LDAF=0.3816;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144124548 rs78041945 G A 100 PASS AA=g;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1138;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144124609 rs11136300 T C 100 PASS AA=c;AC=1;AF=0.71;AFR_AF=0.75;AMR_AF=0.67;AN=2;ASN_AF=0.79;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.64;LDAF=0.7087;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 144126244 rs4612316 T C 100 PASS AA=c;AC=1;AF=0.69;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.79;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.62;LDAF=0.6904;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 144295782 rs11538388 G T 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.25;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3775;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.56,-0.00 +8 144332012 rs6558339 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.87;AMR_AF=0.88;AN=2;ASN_AF=0.87;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.82;LDAF=0.8544;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 144332082 rs11136275 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.56;AMR_AF=0.64;AN=2;ASN_AF=0.76;AVGPOST=0.9859;ERATE=0.0175;EUR_AF=0.49;LDAF=0.5996;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144351632 rs6558341 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9734;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144358381 rs1056148 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.10;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9951;ERATE=0.0007;EUR_AF=0.49;LDAF=0.4721;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.17,-0.00 +8 144378184 rs2235115 C G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.21;AMR_AF=0.57;AN=2;ASN_AF=0.69;AVGPOST=0.9802;ERATE=0.0005;EUR_AF=0.46;LDAF=0.4805;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.84,-0.07 +8 144378868 rs7386259 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.85;LDAF=0.8860;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +8 144391728 rs7386475 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.26;AMR_AF=0.69;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0015;EUR_AF=0.55;LDAF=0.5791;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144392368 rs2293925 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.05;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4543;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +8 144398029 rs13275896 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.35;AMR_AF=0.72;AN=2;ASN_AF=0.80;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6024;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144398123 rs2293928 G C 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.07;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4547;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144398132 rs2293927 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.26;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5740;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144399885 rs61401831 A C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.25;AMR_AF=0.65;AN=2;ASN_AF=0.77;AVGPOST=0.9810;ERATE=0.0005;EUR_AF=0.51;LDAF=0.5431;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 144399886 rs2272636 G T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.24;AMR_AF=0.65;AN=2;ASN_AF=0.77;AVGPOST=0.9813;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5428;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +8 144417051 rs2956274 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.90;AN=2;ASN_AF=0.79;AVGPOST=0.9834;ERATE=0.0017;EUR_AF=0.85;LDAF=0.8545;RSQ=0.9410;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +8 144462169 rs3812440 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.56;AMR_AF=0.82;AN=2;ASN_AF=0.78;AVGPOST=0.9822;ERATE=0.0043;EUR_AF=0.83;LDAF=0.7519;RSQ=0.9633;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +8 144618379 rs11774857 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +8 144620183 rs4874147 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.69;AMR_AF=0.75;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7895;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144620342 rs1318196 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.56;AMR_AF=0.44;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3902;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144620855 rs4873802 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.23;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1414;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144621058 rs150994390 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0095;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144621084 rs3750207 T G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.56;AMR_AF=0.44;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3902;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144623574 rs2242093 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1998;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 144641753 rs4874151 A C 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.79;LDAF=0.7824;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 144641912 rs201573599 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0055;RSQ=0.9086;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.62 +8 144642178 rs11774948 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9867;ERATE=0.0034;EUR_AF=1.00;LDAF=0.9449;RSQ=0.9232;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.19,-0.00 +8 144642854 rs11551202 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1641;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144642986 rs11136298 T C 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9930;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9562;RSQ=0.9386;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-2.67,-0.44,-0.19 +8 144643321 rs12541790 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8223;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.04,-0.00 +8 144643603 rs2290414 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.43;AMR_AF=0.49;AN=2;ASN_AF=0.58;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.45;LDAF=0.4847;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.91,-0.00,-5.00 +8 144644583 rs1349806 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.79;LDAF=0.8229;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +8 144644787 rs1377663 T A 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.66;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8199;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +8 144649968 rs13255489 C T 100 PASS AA=c;AC=2;AF=0.81;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9954;ERATE=0.0007;EUR_AF=0.78;LDAF=0.8061;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +8 144650925 rs13279011 A T 100 PASS AA=t;AC=1;AF=0.78;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.91;AVGPOST=0.9892;ERATE=0.0011;EUR_AF=0.79;LDAF=0.7797;RSQ=0.9755;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|0:1.000:-1.84,-0.01,-5.00 +8 144652281 rs11990325 T A 100 PASS AA=a;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9737;ERATE=0.0199;EUR_AF=0.26;LDAF=0.2425;RSQ=0.9442;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144654249 rs10866911 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.13;AMR_AF=0.49;AN=2;ASN_AF=0.32;AVGPOST=0.9942;ERATE=0.0004;EUR_AF=0.53;LDAF=0.3778;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +8 144654255 rs4874153 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.72;AMR_AF=0.74;AN=2;ASN_AF=0.89;AVGPOST=0.9938;ERATE=0.0012;EUR_AF=0.82;LDAF=0.8008;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 144654582 rs4874154 C A 100 PASS AA=a;AC=2;AF=0.75;AFR_AF=0.64;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9201;ERATE=0.0309;EUR_AF=0.78;LDAF=0.7355;RSQ=0.8369;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.91,-0.06 +8 144654586 rs4874155 G C 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.95,-0.00 +8 144654594 rs4873803 G T 100 PASS AA=g;AC=2;AF=0.37;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.32;AVGPOST=0.9930;ERATE=0.0012;EUR_AF=0.53;LDAF=0.3750;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +8 144654693 rs4873804 G C 100 PASS AA=g;AC=2;AF=0.37;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.32;AVGPOST=0.9944;ERATE=0.0006;EUR_AF=0.53;LDAF=0.3747;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +8 144658711 rs872935 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.22;AMR_AF=0.55;AN=2;ASN_AF=0.35;AVGPOST=0.9986;ERATE=0.0064;EUR_AF=0.63;LDAF=0.4496;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144659608 rs12678314 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.70;AMR_AF=0.71;AN=2;ASN_AF=0.73;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.75;LDAF=0.7284;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.50,-0.01 +8 144662353 rs1062391 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.15;AMR_AF=0.53;AN=2;ASN_AF=0.36;AVGPOST=0.9989;ERATE=0.0013;EUR_AF=0.62;LDAF=0.4309;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +8 144671244 rs4874160 C A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.47;AMR_AF=0.85;AN=2;ASN_AF=0.56;AVGPOST=0.9827;ERATE=0.0013;EUR_AF=0.92;LDAF=0.7136;RSQ=0.9764;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.39,-0.02 +8 144671685 rs6985081 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9394;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.07,-0.00 +8 144671922 rs3812448 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.46;AMR_AF=0.81;AN=2;ASN_AF=0.47;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.85;LDAF=0.6546;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 144688736 rs2242090 C G 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.11;AMR_AF=0.48;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3761;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144697041 rs1049832 A G 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.08;AMR_AF=0.54;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.3797;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144732026 rs3750203 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.07;AMR_AF=0.52;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.3637;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144732363 rs4875017 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144732418 rs4874084 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144732450 rs3750204 G A 100 PASS AA=g;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.31;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3088;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 144775871 rs6987308 C A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.49;AMR_AF=0.69;AN=2;ASN_AF=0.23;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.85;LDAF=0.5789;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144776109 rs11786757 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9906;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +8 144776713 rs7464270 A C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.49;AMR_AF=0.69;AN=2;ASN_AF=0.23;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.85;LDAF=0.5783;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144800004 rs12543136 G A 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.13;AMR_AF=0.65;AN=2;ASN_AF=0.46;AVGPOST=0.9887;ERATE=0.0073;EUR_AF=0.79;LDAF=0.5295;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.45,-0.00 +8 144801243 rs12678428 C T 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.10;AMR_AF=0.62;AN=2;ASN_AF=0.47;AVGPOST=0.9949;ERATE=0.0065;EUR_AF=0.74;LDAF=0.5055;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +8 144801681 rs11778657 G A 100 PASS AA=g;AC=2;AF=0.52;AFR_AF=0.11;AMR_AF=0.65;AN=2;ASN_AF=0.45;AVGPOST=0.9980;ERATE=0.0031;EUR_AF=0.78;LDAF=0.5190;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144802884 rs146609910 C T 100 PASS AA=c;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.0026;LDAF=0.0069;RSQ=0.9359;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144803616 rs11783357 C T 100 PASS AA=t;AC=2;AF=0.68;AFR_AF=0.70;AMR_AF=0.71;AN=2;ASN_AF=0.47;AVGPOST=0.9775;ERATE=0.0056;EUR_AF=0.81;LDAF=0.6777;RSQ=0.9653;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144808747 rs11136321 G A 100 PASS AA=g;AC=2;AF=0.56;AFR_AF=0.25;AMR_AF=0.68;AN=2;ASN_AF=0.45;AVGPOST=0.9921;ERATE=0.0007;EUR_AF=0.80;LDAF=0.5662;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +8 144809804 rs13254035 G A 100 PASS AA=g;AC=2;AF=0.86;AFR_AF=0.46;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9921;ERATE=0.0010;EUR_AF=0.99;LDAF=0.8596;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.26,-0.02 +8 144810138 rs1137806 G A 100 PASS AA=N;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.26;AVGPOST=0.9421;ERATE=0.0014;EUR_AF=0.14;LDAF=0.1505;RSQ=0.8358;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.050:-0.89,-0.39,-0.33 +8 144811338 rs9969600 C G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144874366 rs7461245 T C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9889;RSQ=0.9312;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +8 144874554 rs6991873 T C 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9955;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9886;RSQ=0.8439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.87,-0.06 +8 144885580 rs13281371 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.91;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.91;LDAF=0.9267;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +8 144889172 rs10866915 A G 100 PASS AA=g;AC=2;AF=0.88;AFR_AF=0.73;AMR_AF=0.90;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.90;LDAF=0.8803;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 144890873 rs10098508 A T 100 PASS AA=t;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9997;RSQ=0.1137;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144893084 rs6558394 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.50;AMR_AF=0.64;AN=2;ASN_AF=0.36;AVGPOST=0.9931;ERATE=0.0144;EUR_AF=0.64;LDAF=0.5354;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144893383 rs201834512 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0014;RSQ=0.7365;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.900:-4.10,-0.00,-5.00 +8 144894496 rs4875060 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.82;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9003;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 144990879 rs187810163 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9968;ERATE=0.0004;LDAF=0.0089;RSQ=0.8368;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 144996111 rs34803322 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9936;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0555;RSQ=0.9508;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 144997783 rs74772299 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9909;ERATE=0.0009;EUR_AF=0.03;LDAF=0.0433;RSQ=0.9077;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-3.08,-0.47,-0.18 +8 144998514 rs75586449 C T 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9902;ERATE=0.0006;EUR_AF=0.03;LDAF=0.0431;RSQ=0.9017;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-1.65,-0.01,-5.00 +8 145057868 rs11544989 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.90;AMR_AF=0.52;AN=2;ASN_AF=0.19;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5398;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 145066886 rs13277282 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.89;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9696;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145150832 rs7820984 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9702;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145151910 rs2070688 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.29;AVGPOST=0.9960;ERATE=0.0010;EUR_AF=0.0013;LDAF=0.1086;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145158446 rs12549149 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.69;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9832;ERATE=0.0018;EUR_AF=0.91;LDAF=0.8804;RSQ=0.9373;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +8 145158503 rs11136254 G T 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.70;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9823;ERATE=0.0019;EUR_AF=0.91;LDAF=0.8902;RSQ=0.9344;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-3.09,-0.47,-0.18 +8 145160646 rs11136256 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9639;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145161823 rs11546144 G A 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.69;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8876;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +8 145161896 rs13263342 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.71;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8931;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +8 145223191 rs6982878 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.49;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9852;ERATE=0.0169;EUR_AF=1.00;LDAF=0.8761;RSQ=0.9625;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.76,-0.00 +8 145223288 rs34819224 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.31;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9918;ERATE=0.0121;EUR_AF=1.00;LDAF=0.8284;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0122;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145234508 rs7842771 G C 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.54;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8678;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +8 145247168 rs6988451 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.54;AMR_AF=0.44;AN=2;ASN_AF=0.23;AVGPOST=0.9788;ERATE=0.0007;EUR_AF=0.39;LDAF=0.3912;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +8 145537328 rs62530368 T G 100 PASS AA=-;AC=2;AF=0.51;AFR_AF=0.48;AMR_AF=0.63;AN=2;ASN_AF=0.48;AVGPOST=0.8986;ERATE=0.0193;EUR_AF=0.49;LDAF=0.5012;RSQ=0.8537;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +8 145639320 rs736676 G C 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.33;AMR_AF=0.43;AN=2;ASN_AF=0.30;AVGPOST=0.9924;ERATE=0.0127;EUR_AF=0.50;LDAF=0.3963;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.22,-0.03 +8 145639521 rs4992316 T C 100 PASS AA=t;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9888;ERATE=0.0006;EUR_AF=0.95;LDAF=0.9707;RSQ=0.8441;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +8 145639726 rs2272662 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.08;AMR_AF=0.45;AN=2;ASN_AF=0.50;AVGPOST=0.9777;ERATE=0.0410;EUR_AF=0.58;LDAF=0.4293;RSQ=0.9686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +8 145640411 rs2977838 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9709;ERATE=0.0123;EUR_AF=0.94;LDAF=0.9564;RSQ=0.7491;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145641328 rs17855765 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9922;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4374;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.150:-5.00,-1.09,-0.04 +8 145641392 rs4355816 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9938;ERATE=0.0006;LDAF=0.0224;RSQ=0.8912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.44 +8 145641564 rs2280839 T G 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9933;ERATE=0.0030;EUR_AF=0.55;LDAF=0.4861;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +8 145642002 rs2280838 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.42;AMR_AF=0.48;AN=2;ASN_AF=0.41;AVGPOST=0.9916;ERATE=0.0018;EUR_AF=0.58;LDAF=0.4811;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.70 +8 145642194 rs77422016 A C 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.20;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0741;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 145650321 rs191913784 G A 100 PASS AA=g;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.44 +8 145651491 rs192788085 G A 100 PASS AA=g;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0064;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.85 +8 145660833 rs1010427 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.42;AVGPOST=0.9858;ERATE=0.0045;EUR_AF=0.59;LDAF=0.5123;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.700:-2.23,-0.01,-1.75 +8 145663814 rs13255086 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5106;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.00,-0.00 +8 145665407 rs2229315 C T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.58;AMR_AF=0.49;AN=2;ASN_AF=0.42;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.55;LDAF=0.5141;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +8 145665516 rs2306383 T C 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.89;AMR_AF=0.92;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9062;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145665637 rs2620650 A G 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.91;AMR_AF=0.92;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9099;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145665761 rs2229313 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.37;AMR_AF=0.52;AN=2;ASN_AF=0.41;AVGPOST=0.9950;ERATE=0.0082;EUR_AF=0.61;LDAF=0.4908;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145667405 rs2242264 C G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.92;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9260;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +8 145668042 rs741969 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=0.9978;ERATE=0.0015;EUR_AF=0.53;LDAF=0.4814;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 145689915 rs2721167 G A 100 PASS AA=A;AC=1;AF=0.90;AFR_AF=0.84;AMR_AF=0.93;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8994;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145690308 rs2721166 C T 100 PASS AA=t;AC=1;AF=0.90;AFR_AF=0.84;AMR_AF=0.93;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8994;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145692110 rs2306388 C T 100 PASS AA=N;AC=1;AF=0.89;AFR_AF=0.83;AMR_AF=0.93;AN=2;ASN_AF=0.79;AVGPOST=0.9755;ERATE=0.0028;EUR_AF=1.00;LDAF=0.8876;RSQ=0.9084;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.050:-2.99,-0.47,-0.18 +8 145692296 rs2250895 A C 100 PASS AA=c;AC=1;AF=0.92;AFR_AF=0.94;AMR_AF=0.93;AN=2;ASN_AF=0.79;AVGPOST=0.9961;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9200;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.55 +8 145692385 rs2250891 C T 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.84;AMR_AF=0.93;AN=2;ASN_AF=0.79;AVGPOST=0.9931;ERATE=0.0010;EUR_AF=1.00;LDAF=0.8944;RSQ=0.9729;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +8 145692535 rs201345666 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0005;LDAF=0.0012;RSQ=0.7986;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 145693720 rs2250657 A G 100 PASS AA=G;AC=1;AF=0.93;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.80;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9330;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145699601 rs2721176 T C 100 PASS AA=C;AC=1;AF=0.93;AFR_AF=0.97;AMR_AF=0.93;AN=2;ASN_AF=0.80;AVGPOST=0.9964;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9270;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145724275 rs3816732 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.09;AMR_AF=0.52;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3946;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145729727 rs1063739 C A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.18;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4154;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145745182 rs2721172 T C 100 PASS AA=C;AC=1;AF=0.93;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9322;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145747920 rs13277542 T G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.09;AMR_AF=0.58;AN=2;ASN_AF=0.45;AVGPOST=0.9415;ERATE=0.0069;EUR_AF=0.47;LDAF=0.4077;RSQ=0.9180;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-2.07,-0.00,-4.10 +8 145750138 rs2721138 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.64;AMR_AF=0.57;AN=2;ASN_AF=0.47;AVGPOST=0.9857;ERATE=0.0017;EUR_AF=0.47;LDAF=0.5234;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.42 +8 145771211 rs2721161 C G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.68;AMR_AF=0.58;AN=2;ASN_AF=0.59;AVGPOST=0.9479;ERATE=0.0320;EUR_AF=0.53;LDAF=0.5845;RSQ=0.9241;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145806681 rs2620647 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9890;ERATE=0.0016;EUR_AF=1.00;LDAF=0.9922;RSQ=0.4706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.03 +8 145947776 rs2722468 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.1175;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 145999498 rs199914624 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 146003567 rs2294120 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.09;AMR_AF=0.49;AN=2;ASN_AF=0.71;AVGPOST=0.9984;ERATE=0.0032;EUR_AF=0.45;LDAF=0.4426;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 146067054 rs1735169 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.69;AMR_AF=0.44;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4959;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +8 146068594 rs1735408 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.96;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0017;EUR_AF=0.82;LDAF=0.9075;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 146115367 rs2735906 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.97;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8847;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +8 146156247 rs3735789 C A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.36;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.25;LDAF=0.2981;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 146157339 rs3735787 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2357;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +8 146171437 rs3735785 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2381;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 540741 rs1800814 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.55;AMR_AF=0.54;AN=2;ASN_AF=0.50;AVGPOST=0.9994;ERATE=0.0019;EUR_AF=0.47;LDAF=0.5091;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 550409 rs183980841 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.31;AMR_AF=0.32;AN=2;ASN_AF=0.32;AVGPOST=0.7451;ERATE=0.0283;EUR_AF=0.45;LDAF=0.3902;RSQ=0.5567;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 0|1:1.300:-0.48,-0.48,-0.48 +7 550414 rs187675590 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.05;AVGPOST=0.9732;ERATE=0.0014;EUR_AF=0.03;LDAF=0.0391;RSQ=0.7326;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.100:-0.48,-0.48,-0.48 +7 550419 rs192599376 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.04;AVGPOST=0.9744;ERATE=0.0016;EUR_AF=0.04;LDAF=0.0396;RSQ=0.7395;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-2.34,-0.01,-1.70 +7 551946 rs9692018 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.84;AVGPOST=0.9903;ERATE=0.0006;EUR_AF=0.95;LDAF=0.8411;RSQ=0.9744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.41,-0.00 +7 552046 rs1129401 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=0.9970;ERATE=0.0162;EUR_AF=0.26;LDAF=0.2461;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 590199 rs11545042 A G 100 PASS AA=a;AC=1;AF=0.17;AFR_AF=0.26;AMR_AF=0.12;AN=2;ASN_AF=0.23;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1730;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.37 +7 591125 rs71518309 C G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.74;AMR_AF=0.67;AN=2;ASN_AF=0.60;AVGPOST=0.9935;ERATE=0.0006;EUR_AF=0.49;LDAF=0.6053;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +7 591146 rs118004775 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.09;LDAF=0.0726;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.31 +7 618855 rs62431411 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.50;AMR_AF=0.35;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3912;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 618869 rs62431412 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.50;AMR_AF=0.35;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3912;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 618938 rs3211362 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.53;AMR_AF=0.36;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.44;LDAF=0.4009;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 624221 rs9330368 T G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.83;AMR_AF=0.71;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.57;LDAF=0.7188;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 780980 rs6943337 T G 100 PASS AA=t;AC=1;AF=0.74;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7427;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.13 +7 794471 rs34761279 A G 100 PASS AA=a;AC=1;AF=0.80;AFR_AF=0.88;AMR_AF=0.77;AN=2;ASN_AF=0.74;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8024;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +7 796430 rs73036225 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.0942;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 813867 rs6973746 C G 100 PASS AA=c;AC=1;AF=0.65;AFR_AF=0.78;AMR_AF=0.57;AN=2;ASN_AF=0.52;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6441;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +7 825114 rs67721251 T C 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.74;AMR_AF=0.67;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7221;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 897492 rs10950789 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.48;AN=2;ASN_AF=0.51;AVGPOST=0.9968;ERATE=0.0016;EUR_AF=0.35;LDAF=0.4439;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 900035 rs4276575 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.21;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1307;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 925717 rs11543222 G A 100 PASS AA=g;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1130;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 939007 rs79698027 C G 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.14;AN=2;AVGPOST=0.9946;ERATE=0.0057;EUR_AF=0.21;LDAF=0.1046;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 939163 rs200373083 C T 100 PASS AA=c;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0010;RSQ=0.8965;SNPSOURCE=EXOME;THETA=0.0092;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 940181 rs10256887 C T 100 PASS AA=t;AC=1;AF=0.87;AFR_AF=0.96;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=0.9941;ERATE=0.0135;EUR_AF=0.84;LDAF=0.8726;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.17 +7 940298 rs13224354 C G 100 PASS AA=N;AC=1;AF=0.63;AFR_AF=0.55;AMR_AF=0.74;AN=2;ASN_AF=0.45;AVGPOST=0.9792;ERATE=0.0196;EUR_AF=0.76;LDAF=0.6282;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +7 944683 rs1881121 C T 100 PASS AA=t;AC=1;AF=0.91;AFR_AF=0.97;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0069;EUR_AF=0.81;LDAF=0.9059;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1024002 rs3735689 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.90;AMR_AF=0.59;AN=2;ASN_AF=0.67;AVGPOST=0.9630;ERATE=0.0076;EUR_AF=0.49;LDAF=0.6382;RSQ=0.9450;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.42,-0.01,-1.65 +7 1024581 rs3824081 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.78;AMR_AF=0.57;AN=2;ASN_AF=0.68;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.50;LDAF=0.6207;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 1028448 rs3808348 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.31;AVGPOST=0.9952;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2197;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 1131356 rs3802141 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.82;AMR_AF=0.62;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6309;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 1477969 rs193271993 T G 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0056;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +7 1481919 rs4236408 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9880;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 1482009 rs61744261 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.51;AVGPOST=0.9946;ERATE=0.0149;EUR_AF=0.13;LDAF=0.2455;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1484572 rs10435184 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.98;LDAF=0.9902;RSQ=0.8639;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +7 1518336 rs11977356 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.70;AMR_AF=0.43;AN=2;ASN_AF=0.72;AVGPOST=0.9920;ERATE=0.0010;EUR_AF=0.47;LDAF=0.5799;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +7 1519946 rs7783971 A T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.84;AMR_AF=0.44;AN=2;ASN_AF=0.72;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6136;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1522157 rs10227674 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.77;AMR_AF=0.43;AN=2;ASN_AF=0.72;AVGPOST=0.9940;ERATE=0.0005;EUR_AF=0.47;LDAF=0.5949;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1522175 rs10224038 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.98;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=0.9883;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7964;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1526456 rs62435333 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.55;AVGPOST=0.9725;ERATE=0.0009;EUR_AF=0.34;LDAF=0.3128;RSQ=0.9561;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1529201 rs4425657 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.42;AMR_AF=0.35;AN=2;ASN_AF=0.72;AVGPOST=0.9946;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4783;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.03 +7 1532631 rs10229645 G A 100 PASS AA=g;AC=1;AF=0.62;AFR_AF=0.84;AMR_AF=0.45;AN=2;ASN_AF=0.72;AVGPOST=0.9590;ERATE=0.0187;EUR_AF=0.49;LDAF=0.6149;RSQ=0.9397;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1533513 rs2251226 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.84;AMR_AF=0.43;AN=2;ASN_AF=0.72;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.48;LDAF=0.6135;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.05,-0.00,-4.00 +7 1533556 rs2251231 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.59;AMR_AF=0.40;AN=2;ASN_AF=0.72;AVGPOST=0.9965;ERATE=0.0005;EUR_AF=0.46;LDAF=0.5451;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.40 +7 1533566 rs2251232 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.84;AMR_AF=0.43;AN=2;ASN_AF=0.72;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.48;LDAF=0.6124;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.41 +7 1534425 rs752791 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.84;AMR_AF=0.44;AN=2;ASN_AF=0.72;AVGPOST=0.9961;ERATE=0.0008;EUR_AF=0.48;LDAF=0.6131;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1535051 rs892530 A G 100 PASS AA=g;AC=1;AF=0.61;AFR_AF=0.83;AMR_AF=0.44;AN=2;ASN_AF=0.72;AVGPOST=0.9960;ERATE=0.0006;EUR_AF=0.48;LDAF=0.6121;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1535838 rs3735659 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9953;ERATE=0.0021;EUR_AF=0.0013;LDAF=0.0115;RSQ=0.8212;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1538021 rs11761394 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9955;ERATE=0.0005;EUR_AF=0.06;LDAF=0.0278;RSQ=0.9317;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 1538877 rs750005 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.83;AMR_AF=0.43;AN=2;ASN_AF=0.72;AVGPOST=0.9967;ERATE=0.0006;EUR_AF=0.48;LDAF=0.6111;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1539799 rs2304357 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.44;AMR_AF=0.36;AN=2;ASN_AF=0.71;AVGPOST=0.9878;ERATE=0.0042;EUR_AF=0.44;LDAF=0.4951;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1540049 rs2304358 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.85;AMR_AF=0.43;AN=2;ASN_AF=0.72;AVGPOST=0.9960;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6163;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-2.24,-0.00,-5.00 +7 1542697 rs3752714 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.77;AMR_AF=0.43;AN=2;ASN_AF=0.72;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.47;LDAF=0.5958;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1542814 rs3752715 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.77;AMR_AF=0.43;AN=2;ASN_AF=0.72;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5958;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1586662 rs3779607 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.71;AVGPOST=0.9904;ERATE=0.0010;EUR_AF=0.61;LDAF=0.6519;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1586866 rs3824072 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.81;AMR_AF=0.69;AN=2;ASN_AF=0.71;AVGPOST=0.9915;ERATE=0.0012;EUR_AF=0.62;LDAF=0.6946;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +7 1589956 rs201867640 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9991;ERATE=0.0004;LDAF=0.0013;RSQ=0.7230;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +7 1590443 rs2304361 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.57;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6408;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1595068 rs17852421 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.18;AVGPOST=0.9921;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2390;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 1938031 rs73288773 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.17;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0833;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 1976457 rs1801368 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3255;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-4.22 +7 1976556 rs2280550 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3253;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.34,-0.00,-5.00 +7 2257612 rs6951493 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.33;LDAF=0.3619;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2290522 rs1799832 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.20;LDAF=0.1478;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2290685 rs1062492 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1310;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2296493 rs2302070 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.72;AMR_AF=0.85;AN=2;ASN_AF=0.80;AVGPOST=0.9970;ERATE=0.0019;EUR_AF=0.96;LDAF=0.8466;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 2297006 rs6888 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.80;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9136;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.03,-0.00 +7 2303986 rs2286206 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.8620;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 2400306 rs953770 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.24;AMR_AF=0.59;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5306;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2414142 rs886632 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.92;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.8341;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 2577691 rs1043294 C G 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.0035;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0814;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2577781 rs1043291 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.70;AMR_AF=0.39;AN=2;ASN_AF=0.39;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.35;LDAF=0.4448;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2578237 rs4719552 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.70;AMR_AF=0.39;AN=2;ASN_AF=0.39;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.35;LDAF=0.4442;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2578434 rs4721763 G T 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.69;AMR_AF=0.39;AN=2;ASN_AF=0.39;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.35;LDAF=0.4429;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2580914 rs62442586 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.0035;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0821;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-2.31,-0.00,-5.00 +7 2580986 . C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9992;ERATE=0.0004;LDAF=0.0010;RSQ=0.6760;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +7 2583328 rs61753095 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1005;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2584523 rs34720091 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.0035;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0809;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.02,-0.00,-3.70 +7 2587122 rs2164688 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.71;AMR_AF=0.39;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4487;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2611878 rs2917751 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.52;AVGPOST=0.9986;ERATE=0.0016;EUR_AF=0.77;LDAF=0.6643;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 2613008 rs62442625 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.11;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0971;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2613042 rs2304540 G C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.76;AMR_AF=0.69;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6846;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 2613062 rs61739566 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.11;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0964;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2613133 rs62442626 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0585;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2623351 rs13242369 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.37;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3340;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2649673 rs3735108 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4347;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2649704 rs3735109 T G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.30;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4365;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2649777 rs1061566 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.14;LDAF=0.0649;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2649819 rs3735110 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.30;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4362;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2686455 rs3801080 C A 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.18;AVGPOST=0.9948;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2321;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-1.88,-0.01,-5.00 +7 2686761 rs3801079 G C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.84;AMR_AF=0.57;AN=2;ASN_AF=0.69;AVGPOST=0.9898;ERATE=0.0007;EUR_AF=0.49;LDAF=0.6354;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.80,-0.07 +7 2697881 rs2302342 G T 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1367;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +7 2748758 rs59438885 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.18;AMR_AF=0.08;AN=2;ASN_AF=0.54;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2360;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2748803 rs58726146 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.28;AMR_AF=0.10;AN=2;ASN_AF=0.54;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.13;LDAF=0.2665;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.00 +7 2748901 rs58748470 G C 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.28;AMR_AF=0.10;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.13;LDAF=0.2688;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2752059 rs55919423 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0124;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2951824 rs2301921 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.15;AMR_AF=0.10;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1033;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2952886 rs1626708 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.06;AVGPOST=0.9948;ERATE=0.0068;EUR_AF=0.26;LDAF=0.1550;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2956918 rs3735123 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.27;AMR_AF=0.11;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1290;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2957005 rs3735124 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.56;AMR_AF=0.36;AN=2;ASN_AF=0.59;AVGPOST=0.9994;ERATE=0.0031;EUR_AF=0.20;LDAF=0.4108;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2959172 rs3735126 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.26;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1238;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2962293 rs3735131 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.22;AMR_AF=0.11;AN=2;ASN_AF=0.16;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.02;LDAF=0.1149;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2962753 rs2527509 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.32;AMR_AF=0.64;AN=2;ASN_AF=0.42;AVGPOST=0.9977;ERATE=0.0052;EUR_AF=0.78;LDAF=0.5574;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 2964011 rs41469246 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.23;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.02;LDAF=0.1152;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2966445 rs1182136 T G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.53;AMR_AF=0.69;AN=2;ASN_AF=0.30;AVGPOST=0.9915;ERATE=0.0144;EUR_AF=0.62;LDAF=0.5270;RSQ=0.9892;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 2968359 rs12671442 C T 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.20;AMR_AF=0.09;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1014;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 2968361 rs2527506 G A 100 PASS AA=g;AC=1;AF=0.23;AFR_AF=0.21;AMR_AF=0.24;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2341;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 4026944 rs7785899 C G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.75;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0017;EUR_AF=0.28;LDAF=0.3703;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 4116665 rs11978101 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2202;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 4172006 rs13224870 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2418;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 4185592 rs608271 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.71;AMR_AF=0.84;AN=2;ASN_AF=0.84;AVGPOST=0.9892;ERATE=0.0246;EUR_AF=0.80;LDAF=0.7935;RSQ=0.9751;SNPSOURCE=LOWCOV,EXOME;THETA=0.0075;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 4189075 rs659182 G C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7829;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 4189123 rs4720177 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.39;AMR_AF=0.58;AN=2;ASN_AF=0.67;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.53;LDAF=0.5439;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 4213877 rs601424 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.59;AMR_AF=0.69;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.66;LDAF=0.6755;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 4213940 rs671756 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.57;AMR_AF=0.69;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.66;LDAF=0.6705;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 4213975 rs671694 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.97;AMR_AF=0.79;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0012;EUR_AF=0.73;LDAF=0.8029;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 4304727 rs10270413 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.56;AMR_AF=0.69;AN=2;ASN_AF=0.89;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6985;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.14,-0.03 +7 4780514 rs3087749 G T 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.34;AMR_AF=0.54;AN=2;ASN_AF=0.89;AVGPOST=0.9978;ERATE=0.0056;EUR_AF=0.50;LDAF=0.5723;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 4802029 rs6976790 T G 100 PASS AA=g;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9792;ERATE=0.0020;EUR_AF=0.98;LDAF=0.9719;RSQ=0.7019;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +7 4839163 rs3736241 A C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.74;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=0.9598;ERATE=0.0104;EUR_AF=0.27;LDAF=0.3642;RSQ=0.9438;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 4841470 rs414035 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9952;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9946;RSQ=0.6240;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.71,-0.00 +7 4874420 rs2292498 G C 100 PASS AA=-;AC=2;AF=0.24;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.34;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2405;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.70,-0.01 +7 4876057 rs3763384 C T 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.34;AVGPOST=0.9925;ERATE=0.0013;EUR_AF=0.28;LDAF=0.2415;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.48,-0.00 +7 4959789 rs932060 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.61;AMR_AF=0.55;AN=2;ASN_AF=0.29;AVGPOST=0.9970;ERATE=0.0006;EUR_AF=0.41;LDAF=0.4469;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.06,-0.89,-5.00 +7 4959807 rs932061 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.61;AMR_AF=0.55;AN=2;ASN_AF=0.29;AVGPOST=0.9962;ERATE=0.0007;EUR_AF=0.41;LDAF=0.4484;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.44 +7 5254227 rs4587243 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9918;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 5331307 rs12667188 A G 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.95;AN=2;ASN_AF=0.94;AVGPOST=0.8984;ERATE=0.0440;EUR_AF=0.92;LDAF=0.8938;RSQ=0.6060;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +7 5334582 rs59119551 C T 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.20;AN=2;ASN_AF=0.50;AVGPOST=0.9962;ERATE=0.0031;EUR_AF=0.20;LDAF=0.2523;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 5338693 rs11761173 C T 100 PASS AA=.;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0378;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.24 +7 5353253 rs140781391 G T 100 PASS AA=g;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=0.9937;ERATE=0.0006;EUR_AF=0.11;LDAF=0.0943;RSQ=0.9711;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.050:-3.08,-0.47,-0.18 +7 5353344 rs12532973 G A 100 PASS AA=g;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=0.9941;ERATE=0.0010;EUR_AF=0.11;LDAF=0.0938;RSQ=0.9714;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-3.00,-0.47,-0.18 +7 5359916 rs56056769 C T 100 PASS AA=c;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0648;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-2.42 +7 5372406 rs13238738 G T 100 PASS AA=.;AC=1;AF=0.59;AFR_AF=0.40;AMR_AF=0.47;AN=2;ASN_AF=0.73;AVGPOST=0.9821;ERATE=0.0015;EUR_AF=0.66;LDAF=0.5866;RSQ=0.9719;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +7 5396955 rs7805732 A G 100 PASS AA=g;AC=2;AF=0.57;AFR_AF=0.84;AMR_AF=0.51;AN=2;ASN_AF=0.26;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5727;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.62,-0.00 +7 5399044 rs12531309 C G 100 PASS AA=g;AC=2;AF=0.27;AFR_AF=0.25;AMR_AF=0.28;AN=2;ASN_AF=0.26;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2681;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 5410425 rs12671708 G C 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.09;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9862;ERATE=0.0017;EUR_AF=0.42;LDAF=0.3575;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.18,-0.00 +7 5427720 rs4724663 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9981;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9983;RSQ=0.5173;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-3.49,-0.50,-0.17 +7 5430283 rs67295626 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.11;AMR_AF=0.48;AN=2;ASN_AF=0.84;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5006;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +7 5434107 rs73057725 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0179;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.53,-0.00,-4.10 +7 5434135 rs4724668 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.79;LDAF=0.9012;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.17,-0.03 +7 5521468 rs10951956 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1165;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 5530827 rs3801057 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.51;AMR_AF=0.40;AN=2;ASN_AF=0.71;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5535;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.04 +7 5530954 rs11975313 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.04;AVGPOST=0.9986;ERATE=0.0012;EUR_AF=0.14;LDAF=0.1467;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-3.80,-0.00,-5.00 +7 5540769 rs6953642 A C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.93;LDAF=0.9348;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 5541009 rs12667381 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.23;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1341;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 5541657 rs4724704 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.83;AMR_AF=0.57;AN=2;ASN_AF=0.74;AVGPOST=0.9952;ERATE=0.0016;EUR_AF=0.66;LDAF=0.7040;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +7 5643145 rs1640233 T C 100 PASS AA=t;AC=1;AF=0.19;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.15;AVGPOST=0.9990;ERATE=0.0016;EUR_AF=0.17;LDAF=0.1952;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 5643479 rs1725183 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.13;LDAF=0.1826;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 5645116 rs116036920 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=0.9855;ERATE=0.0031;EUR_AF=0.06;LDAF=0.0746;RSQ=0.9173;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|0:1.000:-1.46,-0.02,-5.00 +7 5965334 rs150333500 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=0.9155;ERATE=0.0164;EUR_AF=0.35;LDAF=0.4080;RSQ=0.8030;SNPSOURCE=EXOME;THETA=0.0125;VT=SNP GT:DS:GL 0|1:0.700:-0.19,-0.46,-2.40 +7 5983553 rs80120223 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.78;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=0.9160;ERATE=0.0086;EUR_AF=0.83;LDAF=0.8414;RSQ=0.8070;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.98,-0.05 +7 5984721 rs201017159 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.23;AVGPOST=0.9500;ERATE=0.0026;EUR_AF=0.17;LDAF=0.1850;RSQ=0.8440;SNPSOURCE=EXOME;THETA=0.0116;VT=SNP GT:DS:GL 1|0:0.900:-1.97,-0.01,-1.86 +7 5987996 rs200941935 A G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.54;AMR_AF=0.60;AN=2;ASN_AF=0.81;AVGPOST=0.6788;ERATE=0.0278;EUR_AF=0.56;LDAF=0.5732;RSQ=0.3387;SNPSOURCE=EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:1.400:-0.48,-0.48,-0.48 +7 5990888 rs200304474 T C 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.57;AMR_AF=0.68;AN=2;ASN_AF=0.87;AVGPOST=0.6968;ERATE=0.0267;EUR_AF=0.66;LDAF=0.6372;RSQ=0.4093;SNPSOURCE=EXOME;THETA=0.0112;VT=SNP GT:DS:GL 1|1:1.800:-3.52,-0.50,-0.16 +7 6005323 rs200962894 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.0035;AVGPOST=0.9077;ERATE=0.0028;EUR_AF=0.08;LDAF=0.0850;RSQ=0.5205;SNPSOURCE=EXOME;THETA=0.0243;VT=SNP GT:DS:GL 0|1:1.050:-3.05,-0.47,-0.18 +7 6013049 rs1802683 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=0.7611;ERATE=0.0239;EUR_AF=0.17;LDAF=0.2699;RSQ=0.4540;SNPSOURCE=EXOME;THETA=0.0109;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.03,-1.24 +7 6026708 rs63750668 C A 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6026775 rs2228006 T C 100 PASS AA=t;AC=2;AF=0.88;AFR_AF=0.92;AMR_AF=0.75;AN=2;ASN_AF=0.91;AVGPOST=0.9934;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8774;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.36,-0.00 +7 6026988 rs1805321 G A 100 PASS AA=g;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.42;AN=2;ASN_AF=0.39;AVGPOST=0.9962;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3938;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.77 +7 6036980 rs1805319 G C 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.84;AMR_AF=0.73;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8427;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 6038722 rs62456182 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.21;AMR_AF=0.37;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.44;LDAF=0.3603;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6063283 rs4560 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3761;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6066461 rs2639 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.23;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3145;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 6084310 rs511969 G T 100 PASS AA=.;AC=2;AF=0.60;AFR_AF=0.71;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.5964;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 6155166 rs62454267 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.17;AN=2;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.26;LDAF=0.1249;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 6193521 rs61729726 G C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.82;AMR_AF=0.36;AN=2;ASN_AF=0.77;AVGPOST=0.9928;ERATE=0.0008;EUR_AF=0.29;LDAF=0.5437;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +7 6193752 rs61753119 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=0.9964;ERATE=0.0008;EUR_AF=0.13;LDAF=0.0768;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6194230 rs199684634 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9962;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0037;RSQ=0.5958;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 6204999 rs2301910 A C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.92;AMR_AF=0.69;AN=2;ASN_AF=0.88;AVGPOST=0.9963;ERATE=0.0114;EUR_AF=0.70;LDAF=0.7965;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 6213396 rs17136059 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.40;AMR_AF=0.16;AN=2;ASN_AF=0.07;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1975;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6370194 rs6952125 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.89;AMR_AF=0.63;AN=2;ASN_AF=0.88;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.46;LDAF=0.6947;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6370305 rs3750039 C G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.83;AMR_AF=0.63;AN=2;ASN_AF=0.88;AVGPOST=0.9886;ERATE=0.0051;EUR_AF=0.45;LDAF=0.6747;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.10 +7 6370406 rs3750040 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.85;AMR_AF=0.63;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6847;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6426941 rs702483 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.83;AMR_AF=0.61;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.6832;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 6431690 rs836478 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.70;AMR_AF=0.60;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.6549;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 6441688 rs2303364 T C 100 PASS AA=.;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.05;LDAF=0.1761;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 6456263 rs145934843 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +7 6456302 rs2288152 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.04;LDAF=0.1695;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6461348 rs836514 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.54;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2229;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 6461424 rs836515 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.17;AMR_AF=0.05;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0604;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 6465598 rs836524 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.20;AMR_AF=0.05;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0715;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 6505901 rs2230263 T C 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8464;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 6621277 rs11559146 G A 100 PASS AA=g;AC=1;AF=0.31;AFR_AF=0.44;AMR_AF=0.36;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3104;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6628242 rs3088114 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.61;AMR_AF=0.44;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3798;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6639953 rs34300529 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1005;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 6647738 rs4416743 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.49;AVGPOST=0.9916;ERATE=0.0008;EUR_AF=0.85;LDAF=0.7833;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.78,-0.01 +7 6811356 rs201617732 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.29;AMR_AF=0.38;AN=2;ASN_AF=0.25;AVGPOST=0.8952;ERATE=0.0154;EUR_AF=0.39;LDAF=0.3523;RSQ=0.7419;SNPSOURCE=EXOME;THETA=0.0203;VT=SNP GT:DS:GL 1|0:1.000:-3.59,-0.00,-5.00 +7 6813140 rs202123546 A G 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.9255;ERATE=0.0058;EUR_AF=0.59;LDAF=0.6406;RSQ=0.7951;SNPSOURCE=EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|1:1.700:-5.00,-0.94,-0.05 +7 6854512 rs58851147 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.28;AMR_AF=0.29;AN=2;ASN_AF=0.39;AVGPOST=0.9669;ERATE=0.0064;EUR_AF=0.24;LDAF=0.3040;RSQ=0.9476;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.59 +7 6859402 rs200223833 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.25;AVGPOST=0.9878;ERATE=0.0011;EUR_AF=0.05;LDAF=0.0888;RSQ=0.9366;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-3.85,-0.00,-5.00 +7 6861880 rs2711224 G C 100 PASS AA=.;AC=1;AF=0.47;AFR_AF=0.42;AMR_AF=0.53;AN=2;ASN_AF=0.57;AVGPOST=0.9038;ERATE=0.0340;EUR_AF=0.40;LDAF=0.4646;RSQ=0.8728;SNPSOURCE=EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +7 7398457 rs2348042 T G 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.20;AMR_AF=0.75;AN=2;ASN_AF=0.87;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6617;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 7571094 rs7804532 G C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9551;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 7645535 rs10276434 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9876;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 7646651 rs7806046 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9879;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 7646687 rs4222 A G 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.74;AVGPOST=0.9873;ERATE=0.0098;EUR_AF=0.78;LDAF=0.7266;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 8043504 rs38013 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.43;AMR_AF=0.34;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.41;LDAF=0.3622;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 8110780 rs10486207 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.22;LDAF=0.1856;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 8125964 rs929509 C T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.88;AMR_AF=0.71;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7332;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 8126194 rs12847 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.52;AMR_AF=0.50;AN=2;ASN_AF=0.60;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5283;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 10973362 rs7789764 C T 100 PASS AA=c;AC=1;AF=0.67;AFR_AF=0.88;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.57;LDAF=0.6723;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 11075263 rs2353340 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.36;AMR_AF=0.51;AN=2;ASN_AF=0.73;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4759;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 11464297 rs1859226 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.63;AMR_AF=0.50;AN=2;ASN_AF=0.31;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.38;LDAF=0.4416;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 11581003 rs2072139 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1618;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 11581121 rs47 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8253;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 11581134 rs2074603 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.49;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.42;LDAF=0.4582;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 11871406 rs140474426 G C 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9898;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0233;RSQ=0.8319;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 12269417 rs3173615 C G 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.66;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.5489;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 12270770 rs2302634 T A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.66;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.5489;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 12271452 rs3800842 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6449;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 12668760 rs188068227 T A 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0011;RSQ=0.8603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 14758273 rs1997040 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.17;AMR_AF=0.54;AN=2;ASN_AF=0.89;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5202;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 15652068 rs2237493 T G 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.10;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.1545;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 15726066 rs1050290 G A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.84;AMR_AF=0.67;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7166;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.22,-0.41 +7 16445673 rs6461252 A T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.67;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4948;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 16505341 rs6945425 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.87;AMR_AF=0.92;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8981;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 16640358 rs543387 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.70;LDAF=0.7832;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 16640491 rs541797 G A 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.18;AMR_AF=0.28;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1645;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 16650427 rs572570 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.79;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.75;LDAF=0.7962;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 16655387 rs11540037 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.05;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9988;ERATE=0.0013;EUR_AF=0.19;LDAF=0.1620;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 16666741 rs11532682 T G 100 PASS AA=T;AC=2;AF=0.18;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1837;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 16666759 rs11531477 G C 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1842;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 16834551 rs4719480 C A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8981;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 16913394 rs10249749 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9959;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 17854532 rs2723501 G T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.88;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6438;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 17854616 rs2723502 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.50;LDAF=0.6046;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 17908130 rs2389858 T A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.84;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9961;ERATE=0.0009;EUR_AF=0.48;LDAF=0.5788;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 18067433 rs142006625 C T 100 PASS AA=C;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0027;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 18705964 rs35691757 C T 100 PASS AA=C;AC=2;AF=0.03;AFR_AF=0.01;AMR_AF=0.14;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0316;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 18993870 rs2389998 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.78;AMR_AF=0.82;AN=2;ASN_AF=0.74;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.76;LDAF=0.7679;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.87,-0.01 +7 19739947 rs145557463 C G 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0187;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 19744417 rs78012428 T C 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.16;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9964;ERATE=0.0051;EUR_AF=0.04;LDAF=0.0879;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 20193979 rs12671170 T G 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 20197911 rs117084218 C T 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 20198440 rs975263 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.35;AMR_AF=0.30;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.24;LDAF=0.4205;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 20199486 rs146810957 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +7 20201458 rs117142233 G A 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0224;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 20371395 rs206197 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9861;RSQ=0.9565;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +7 20418678 rs3735619 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1854;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 20418926 rs1042277 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.29;AMR_AF=0.29;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3930;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 20420270 rs17142761 T A 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.41;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1787;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 20421490 rs6968952 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.29;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3880;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 20739632 rs11762180 A C 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1699;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 20739672 rs12700230 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1379;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 20768013 rs10254317 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.79;AMR_AF=0.64;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6205;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 20778646 rs6461515 G A 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.66;AMR_AF=0.85;AN=2;ASN_AF=0.87;AVGPOST=0.9993;ERATE=0.0011;EUR_AF=0.82;LDAF=0.8023;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 20778773 rs6461516 C G 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.77;AMR_AF=0.89;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8427;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 20782474 rs12669866 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.52;AMR_AF=0.72;AN=2;ASN_AF=0.66;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5957;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 20784910 rs60197951 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0170;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 21470488 rs76475179 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 22857589 rs7782015 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.84;AMR_AF=0.63;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.66;LDAF=0.7814;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 23015831 rs3735231 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.31;AMR_AF=0.36;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3766;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23164701 rs15775 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.71;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4136;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23191636 rs2178139 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.77;AMR_AF=0.35;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4269;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23191664 rs2141306 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.77;AMR_AF=0.35;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4269;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23221870 rs7808488 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.75;AMR_AF=0.39;AN=2;ASN_AF=0.19;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4062;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +7 23293098 rs199348 C A 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.58;AMR_AF=0.38;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3542;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23293746 rs199347 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.95;AMR_AF=0.42;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4795;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23296533 rs199355 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.58;AMR_AF=0.38;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0016;EUR_AF=0.36;LDAF=0.3546;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23300049 rs199351 A C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.94;AMR_AF=0.42;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4947;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23313171 rs2268748 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.05;LDAF=0.1543;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 23352512 rs199653 C A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9676;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.36,-0.00 +7 23737795 rs5029444 T C 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.26;AMR_AF=0.49;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.51;LDAF=0.4686;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 23757162 rs6945306 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.18;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2527;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 23768907 rs12176610 A G 100 PASS AA=a;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2221;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 23794029 rs4722266 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1979;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23808604 rs61564984 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.14;AMR_AF=0.19;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2651;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 23810605 rs1469000 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.39;AMR_AF=0.56;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4598;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 23854717 rs2390814 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=0.63;AVGPOST=0.9973;ERATE=0.0052;EUR_AF=0.70;LDAF=0.7654;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24325009 rs5573 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.40;AMR_AF=0.64;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5495;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24718710 rs722218 A C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.94;AMR_AF=0.67;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.50;LDAF=0.7545;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24742436 rs17149912 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.27;AVGPOST=0.9989;ERATE=0.0051;EUR_AF=0.17;LDAF=0.2008;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24746022 rs2269812 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.25;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1534;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24747910 rs2721809 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.80;AMR_AF=0.60;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.6810;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24758645 rs876307 G T 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.83;AMR_AF=0.61;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.41;LDAF=0.6896;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24758795 rs876305 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.83;AMR_AF=0.61;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.6892;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24784403 rs2521768 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.93;AMR_AF=0.63;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.45;LDAF=0.6713;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 24854765 rs1044956 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.11;AMR_AF=0.39;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3652;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 24903107 rs2285691 C G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.62;AMR_AF=0.38;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.5031;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 24911526 rs10261181 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.44;AMR_AF=0.31;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.27;LDAF=0.4345;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 25181912 rs2285738 T C 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.40;AMR_AF=0.61;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5503;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 25182001 rs2285737 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.40;AMR_AF=0.61;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5503;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +7 25194618 rs2523073 G A 100 PASS AA=a;AC=1;AF=0.52;AFR_AF=0.57;AMR_AF=0.52;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5251;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 25194665 rs2523072 G C 100 PASS AA=g;AC=1;AF=0.52;AFR_AF=0.57;AMR_AF=0.52;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5251;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 25194753 rs12535348 C T 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.05;AMR_AF=0.41;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2824;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 25194857 rs2717899 A T 100 PASS AA=a;AC=1;AF=0.52;AFR_AF=0.57;AMR_AF=0.52;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5251;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 25267934 rs877834 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2624;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 25267963 rs886354 G C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 25268094 rs877835 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2724;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 26386122 rs3801891 T A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.62;AMR_AF=0.45;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.4428;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 26778406 rs10951145 A G 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.47;AMR_AF=0.62;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.57;LDAF=0.6323;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 27135314 rs10951154 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.47;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9934;ERATE=0.0203;EUR_AF=0.85;LDAF=0.8010;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 27169093 rs2158218 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 27196069 rs2301720 A C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7925;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 27196113 rs2301721 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.16;AMR_AF=0.67;AN=2;ASN_AF=0.84;AVGPOST=0.9915;ERATE=0.0057;EUR_AF=0.83;LDAF=0.6570;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 29070209 rs7313 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.24;AMR_AF=0.39;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3162;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 29070320 rs1052200 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1928;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 29103867 rs644763 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.86;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.81;LDAF=0.8459;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 29103877 rs2074783 T C 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.16;AMR_AF=0.27;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3286;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 29103889 rs143251967 T C 100 PASS AA=T;AC=1;AF=0.0023;AMR_AF=0.0028;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0023;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 29105776 rs2270027 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2075;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 29132212 rs2687636 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.93;AMR_AF=0.52;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6842;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 29544468 rs73684725 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1468;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 29605975 rs2302618 C G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.73;AMR_AF=0.88;AN=2;ASN_AF=0.73;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.96;LDAF=0.8344;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.15,-0.03 +7 30485710 rs6958571 A C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.21;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9952;ERATE=0.0079;EUR_AF=0.21;LDAF=0.2272;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 30485741 rs2907749 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.50;AMR_AF=0.35;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3316;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 30536874 rs38405 G A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.93;AMR_AF=0.56;AN=2;ASN_AF=0.47;AVGPOST=0.9965;ERATE=0.0047;EUR_AF=0.38;LDAF=0.5587;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +7 30544360 rs38414 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.48;AMR_AF=0.65;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6207;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 30634661 rs1049402 C G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.57;AMR_AF=0.74;AN=2;ASN_AF=0.59;AVGPOST=0.9941;ERATE=0.0009;EUR_AF=0.76;LDAF=0.6665;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.100:-5.00,-1.72,-0.01 +7 30643069 rs1558064 C A 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.08;AMR_AF=0.56;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4548;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 30673345 rs2240401 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.10;AMR_AF=0.57;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4591;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 30705105 rs8192496 G A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.43;AMR_AF=0.72;AN=2;ASN_AF=0.42;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5763;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +7 30791848 rs4723010 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.26;AMR_AF=0.34;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0034;EUR_AF=0.39;LDAF=0.2573;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 30795331 rs2302340 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.08;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.43;LDAF=0.3927;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 30795436 rs4720015 T G 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.59;AMR_AF=0.88;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8066;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 30817998 rs11762566 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0571;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 30831082 rs12701034 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.75;AMR_AF=0.46;AN=2;ASN_AF=0.17;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4550;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 31592733 rs7811042 C A 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.36;AMR_AF=0.53;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5160;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31594166 rs2286710 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.53;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7605;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31611758 rs67930674 G T 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.53;AMR_AF=0.47;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.40;LDAF=0.4332;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 31617733 rs6945679 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9570;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31618008 rs10252720 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.74;AMR_AF=0.90;AN=2;ASN_AF=0.91;AVGPOST=0.9758;ERATE=0.0731;EUR_AF=0.86;LDAF=0.8462;RSQ=0.9216;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31681765 rs10239388 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.59;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7582;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.92,-0.00 +7 31682453 rs4141001 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.59;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7583;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31683410 rs10247620 G A 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.73;AMR_AF=0.81;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7934;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31683610 rs38398 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9762;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31691697 rs3735424 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.68;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.76;LDAF=0.7788;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +7 31732089 rs3735422 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.10;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1540;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 31735263 rs34173 G C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.98;AMR_AF=0.72;AN=2;ASN_AF=0.90;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.67;LDAF=0.8078;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31746837 rs2072409 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1271;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 31848706 rs3213709 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.24;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1956;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 31855569 rs2302450 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.25;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2267;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 31855578 rs1860790 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.97;LDAF=0.9556;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 31876766 rs2270218 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.82;AMR_AF=0.69;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.75;LDAF=0.7487;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 32529936 rs1584614 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.66;AMR_AF=0.80;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7824;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 32535437 rs3750086 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9759;ERATE=0.0027;EUR_AF=0.09;LDAF=0.1146;RSQ=0.9123;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.34 +7 32598138 rs12673881 C T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.51;AMR_AF=0.70;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6339;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 32598524 rs1466144 G A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.83;AMR_AF=0.87;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8336;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 32613020 rs1993050 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.38;AMR_AF=0.69;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6028;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 32615553 rs6462381 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.77;AMR_AF=0.83;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7816;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 32908945 rs62467365 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0652;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 32909182 rs752730 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1974;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 33014770 rs3750113 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.11;AMR_AF=0.05;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0883;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-2.29,-0.02,-1.50 +7 33016120 rs3750116 G T 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.72;AMR_AF=0.93;AN=2;ASN_AF=0.78;AVGPOST=0.9654;ERATE=0.0166;EUR_AF=0.90;LDAF=0.8270;RSQ=0.9266;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-2.14,-0.00,-2.88 +7 33020182 rs115452449 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.03;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0820;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 33136209 rs17169625 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0011;EUR_AF=0.01;LDAF=0.0544;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 33136983 rs6462460 G A 100 PASS AA=A;AC=1;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9944;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 33137010 rs74690167 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0485;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 33138875 rs11771864 A T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.69;AMR_AF=0.44;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5535;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 33388713 rs11773504 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1732;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 34192762 rs6968741 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.79;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0140;EUR_AF=0.94;LDAF=0.9210;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0150;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 34697982 rs887020 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.16;AMR_AF=0.52;AN=2;ASN_AF=0.82;AVGPOST=0.9975;ERATE=0.0050;EUR_AF=0.53;LDAF=0.5221;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 34818113 rs324981 A T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4822;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 34851393 rs9655357 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1809;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 34867124 rs34705969 G T 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0166;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 34874038 rs727162 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.30;AMR_AF=0.32;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2834;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 34889185 rs79459851 G T 100 PASS AA=G;AC=1;AF=0.0046;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0046;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 34979905 rs1637696 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.20;AMR_AF=0.25;AN=2;ASN_AF=0.13;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2247;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.96,-0.00,-4.10 +7 34989364 rs2021391 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.30;LDAF=0.2351;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 35009183 rs62461951 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.21;AMR_AF=0.32;AN=2;ASN_AF=0.23;AVGPOST=0.9652;ERATE=0.0124;EUR_AF=0.20;LDAF=0.2335;RSQ=0.9274;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.46 +7 35050217 rs7782779 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.22;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.19;LDAF=0.2183;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-1.69,-0.01,-5.00 +7 35058177 rs10282006 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.05;AMR_AF=0.23;AN=2;ASN_AF=0.14;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.27;LDAF=0.1802;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 35280693 rs2072434 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.31;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3358;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 35288276 rs17675148 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.31;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3363;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 35293193 rs336283 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.85;AMR_AF=0.70;AN=2;ASN_AF=0.56;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6930;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 36320821 rs196586 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.84;AMR_AF=0.95;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9392;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 36324436 rs13232200 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.18;AMR_AF=0.51;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.3798;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 36327410 rs196595 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.44;AMR_AF=0.39;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4804;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 36338749 rs196613 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9501;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 36370555 rs196660 G T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9323;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 36374799 rs3779230 G A 100 PASS AA=G;AC=2;AF=0.10;AFR_AF=0.0041;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0983;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 36396480 rs3735401 A G 100 PASS AA=A;AC=2;AF=0.11;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1080;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 36445856 rs62873663 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.41;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6189;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 36447600 rs3801315 T C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.34;AMR_AF=0.47;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4609;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +7 36450631 rs35533849 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.0115;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 36661423 rs2727822 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.66;AMR_AF=0.69;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.63;LDAF=0.6390;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 36763688 rs2228411 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.53;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3981;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 36934448 rs6462722 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9607;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 37272769 rs35387639 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0375;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 37298800 rs2717968 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.35;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2779;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 37311517 rs17257293 T G 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 37780799 rs61729279 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1152;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 37901581 rs2249451 G A 100 PASS AA=A;AC=1;AF=0.86;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8565;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 37903904 rs3816418 C T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.91;AMR_AF=0.72;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7290;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.95,-0.05,-5.00 +7 37907304 rs10250905 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.91;AMR_AF=0.72;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7299;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 37934234 rs10261071 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6517;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 37936530 rs3213975 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2253;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 37951726 rs1132553 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5000;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 37960835 rs13240429 G A 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.34;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.25;LDAF=0.2622;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.17,-0.00 +7 37988589 rs2044831 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.52;AMR_AF=0.76;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6577;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 37989775 rs1450851 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.84;AMR_AF=0.70;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6501;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 38268395 rs7795499 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.32;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4424;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 38424539 rs76851151 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.0708;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 38429370 rs6977263 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.26;LDAF=0.1654;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 38431481 rs1058655 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1538;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 38431511 rs2229922 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.08;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0628;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 38433726 rs35024632 T G 100 PASS AA=T;AC=1;AF=0.08;AMR_AF=0.05;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0841;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 38505025 rs722334 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.73;AMR_AF=0.71;AN=2;ASN_AF=0.61;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.57;LDAF=0.6401;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-1.97,-0.00,-3.62 +7 38813711 rs976350 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9959;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 38908876 rs3735346 T C 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2056;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 39125413 rs1950001 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8573;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 39500352 rs885689 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9414;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.33,-0.00 +7 42064852 rs846273 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9766;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 42088222 rs846266 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.90;AMR_AF=0.41;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.58;LDAF=0.6262;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 42951515 rs647117 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.28;AMR_AF=0.68;AN=2;ASN_AF=0.81;AVGPOST=0.8823;ERATE=0.0093;EUR_AF=0.78;LDAF=0.6591;RSQ=0.8214;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.69,-0.10 +7 42977091 rs631132 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.79;AMR_AF=0.82;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +7 42977195 rs631561 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9849;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.80,-0.00 +7 43483981 rs61756574 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.0960;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 43484310 rs73098706 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.21;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2885;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 43506059 rs2304329 A G 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.49;AMR_AF=0.58;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5375;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 43540264 rs2304325 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.27;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.26;LDAF=0.2527;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 43540887 rs17339479 A C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.18;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1202;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 43622806 rs10251937 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.31;AVGPOST=0.9950;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3874;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-1.75,-0.01,-5.00 +7 43664280 rs1044141 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7912;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 43664477 rs15866 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.85;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5714;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 43684803 rs2302031 C G 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.88;AMR_AF=0.68;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6677;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +7 43810764 rs699512 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7905;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 43846603 rs7738 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.59;AMR_AF=0.38;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4200;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 43908866 rs2730608 C T 100 PASS AA=-;AC=1;AF=0.50;AFR_AF=0.46;AMR_AF=0.54;AN=2;ASN_AF=0.55;AVGPOST=0.8621;ERATE=0.0122;EUR_AF=0.47;LDAF=0.5022;RSQ=0.7840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-0.48,-0.48,-0.48 +7 43916491 rs2232109 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0731;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 43916727 rs2232108 T G 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.38;AMR_AF=0.53;AN=2;ASN_AF=0.54;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4766;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 43917013 rs2232105 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.54;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.47;LDAF=0.4624;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 43917274 rs2232103 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.83;AMR_AF=0.74;AN=2;ASN_AF=0.71;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7315;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 43982482 rs2074727 A C 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.43;AMR_AF=0.39;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3935;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 44046844 rs61131874 A G 100 PASS AA=.;AC=2;AF=0.32;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.9872;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3126;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-4.10,-0.55,-0.14 +7 44084292 rs4430012 C G 100 PASS AA=-;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.42;AN=2;ASN_AF=0.65;AVGPOST=0.9666;ERATE=0.0033;EUR_AF=0.38;LDAF=0.4285;RSQ=0.9505;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.050:-0.48,-0.48,-0.48 +7 44097696 rs6968228 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.58;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9959;ERATE=0.0005;EUR_AF=0.64;LDAF=0.6746;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-0.04,-1.09,-5.00 +7 44147485 rs2537188 C A 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.30;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=0.9915;ERATE=0.0026;EUR_AF=0.37;LDAF=0.3208;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +7 44148553 rs2595701 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.89;AMR_AF=0.77;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7897;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.79,-0.00 +7 44189393 rs144723656 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0079;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 44266184 rs35452727 C T 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.19;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=0.9819;ERATE=0.0049;EUR_AF=0.05;LDAF=0.1173;RSQ=0.9381;SNPSOURCE=LOWCOV,EXOME;THETA=0.0184;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 44579180 rs2072183 G C 100 PASS AA=N;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.24;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.24;LDAF=0.2724;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 44606098 rs6656 C T 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.93;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7430;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +7 44609752 rs2304373 C T 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1325;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 44610490 rs217376 C T 100 PASS AA=.;AC=1;AF=0.33;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3268;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 44611077 rs217375 T C 100 PASS AA=.;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.38;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3167;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 44612229 rs2289057 G A 100 PASS AA=.;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1431;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 44612347 rs217374 G C 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.96;AMR_AF=0.65;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7573;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 44612454 rs217373 C A 100 PASS AA=.;AC=1;AF=0.32;AFR_AF=0.46;AMR_AF=0.38;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3181;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 44620836 rs8580 C A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.96;AMR_AF=0.65;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7568;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 44836314 rs6850 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.73;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3828;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 44840864 rs10249442 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.32;AMR_AF=0.63;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.5242;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 45004063 rs7792760 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.99;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8941;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 45008963 rs3735483 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.0040;LDAF=0.1152;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 45009325 rs3735484 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.29;AMR_AF=0.37;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4310;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 45009341 rs3735485 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.98;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8935;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 45009723 rs11555636 G A 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0029;EUR_AF=0.55;LDAF=0.5929;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 45077978 rs2107732 G A 100 PASS AA=G;AC=1;AF=0.05;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0467;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 45197433 rs67477213 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.56;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9958;ERATE=0.0007;EUR_AF=0.21;LDAF=0.2393;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.42,-0.21 +7 45217015 rs2074654 T C 100 PASS AA=t;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0645;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 45223018 rs11982639 C G 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.48;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.22;LDAF=0.2468;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 45697295 rs2461131 C G 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.44;AMR_AF=0.72;AN=2;ASN_AF=0.65;AVGPOST=0.9670;ERATE=0.0619;EUR_AF=0.69;LDAF=0.6218;RSQ=0.9390;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:1.500:-5.00,-0.39,-0.23 +7 45697297 rs2471231 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.79;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.86;LDAF=0.8636;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.43,-0.00 +7 45724696 rs2461106 T C 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.16;LDAF=0.1626;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 45743128 rs2247685 T G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4296;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 45957055 rs2471551 G C 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1587;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 47319723 rs4720590 C T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.80;AMR_AF=0.75;AN=2;ASN_AF=0.65;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7063;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 47323456 rs3750164 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.71;AVGPOST=0.9988;ERATE=0.0009;EUR_AF=0.67;LDAF=0.7016;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 47333332 rs75253453 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.0026;LDAF=0.0561;RSQ=0.9721;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 47342713 rs188962919 G C 100 PASS AA=G;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0045;RSQ=0.7534;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 47408029 rs2255744 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.59;AMR_AF=0.74;AN=2;ASN_AF=0.45;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.83;LDAF=0.6609;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 47408974 rs1534136 T A 100 PASS AA=a;AC=1;AF=0.67;AFR_AF=0.62;AMR_AF=0.74;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6666;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 47451295 rs834607 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9875;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +7 47698685 rs12531737 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.23;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1802;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 47840510 rs1466203 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8534;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 47853498 rs6463449 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 47859239 rs3757379 C A 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.31;AMR_AF=0.39;AN=2;ASN_AF=0.64;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4436;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +7 47869751 rs6463451 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4210;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +7 47872845 rs921634 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.67;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7628;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 47884555 rs13237611 A G 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.26;AMR_AF=0.37;AN=2;ASN_AF=0.68;AVGPOST=0.9979;ERATE=0.0038;EUR_AF=0.44;LDAF=0.4516;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 47913579 rs1470859 T C 100 PASS AA=C;AC=1;AF=0.89;AFR_AF=0.93;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9916;ERATE=0.0061;EUR_AF=0.79;LDAF=0.8844;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 47925331 rs10274334 C G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.80;AMR_AF=0.54;AN=2;ASN_AF=0.65;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.46;LDAF=0.5979;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 47943953 rs11766212 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.38;LDAF=0.3130;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 47947863 rs1474283 T C 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.93;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7376;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 47968927 rs2686817 C A 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.47;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.52;LDAF=0.4921;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 47971575 rs885337 A G 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.46;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5010;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 47979922 rs2708913 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.49;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9914;ERATE=0.0148;EUR_AF=0.53;LDAF=0.5061;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48004962 rs1056663 C T 100 PASS AA=c;AC=2;AF=0.46;AFR_AF=0.28;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4570;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48017965 rs2242477 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.32;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4686;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48017989 rs2242478 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.34;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4733;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48018455 rs2242479 T A 100 PASS AA=c;AC=2;AF=0.47;AFR_AF=0.34;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4725;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48028512 rs3736547 G C 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.08;AMR_AF=0.32;AN=2;ASN_AF=0.42;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2950;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 48086077 rs2708912 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.76;AMR_AF=0.86;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8417;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48086161 rs10233232 T C 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.76;AMR_AF=0.86;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8417;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48089542 rs2686788 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8469;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48089571 rs2708890 C A 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.77;AMR_AF=0.86;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8442;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48092486 rs2686791 T C 100 PASS AA=t;AC=2;AF=0.84;AFR_AF=0.77;AMR_AF=0.86;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8432;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48237802 rs2188 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.15;AMR_AF=0.35;AN=2;ASN_AF=0.47;AVGPOST=0.9984;ERATE=0.0007;EUR_AF=0.46;LDAF=0.3730;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 48285485 rs1880738 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.13;AMR_AF=0.43;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3967;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48312674 rs1358066 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.52;AN=2;ASN_AF=0.77;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.46;LDAF=0.5659;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48315796 rs1880736 C A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.99;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7819;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +7 48318811 rs2222648 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.83;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.70;LDAF=0.8277;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +7 48335265 rs10280046 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.77;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7774;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48336844 rs6583546 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.71;AMR_AF=0.76;AN=2;ASN_AF=0.99;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.58;LDAF=0.7463;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +7 48349647 rs3931814 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1054;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 48467355 rs13233421 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.29;AMR_AF=0.26;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3136;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 48506566 rs4917152 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.32;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2254;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 48506642 rs4917153 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.32;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2254;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 48520780 rs4472462 A T 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.41;AMR_AF=0.41;AN=2;ASN_AF=0.52;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4384;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +7 48545976 rs6583448 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 48682996 rs28610321 C G 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.13;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1591;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 49815390 rs769604 C G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.61;AMR_AF=0.46;AN=2;ASN_AF=0.38;AVGPOST=0.9545;ERATE=0.0043;EUR_AF=0.47;LDAF=0.4790;RSQ=0.9290;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.11,-0.65 +7 50023122 rs988392 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.81;AMR_AF=0.67;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8109;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 50070921 rs1351691 C G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7832;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 50512929 rs10230343 C A 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.46;AMR_AF=0.76;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6124;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 50547584 rs11575457 A C 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5347;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 50611735 rs6264 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 50673029 rs4947710 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8728;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 50737384 rs2072235 C T 100 PASS AA=.;AC=1;AF=0.28;AFR_AF=0.02;AMR_AF=0.26;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2798;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 50742118 rs2715128 A G 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9192;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 50742180 rs1800504 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.65;AMR_AF=0.55;AN=2;ASN_AF=0.35;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.52;LDAF=0.5097;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 51093013 rs2240087 A T 100 PASS AA=T;AC=1;AF=0.88;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8784;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 51097063 rs10230120 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9822;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 51287470 rs801142 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.73;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=0.9972;ERATE=0.0008;EUR_AF=0.74;LDAF=0.7588;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 53103371 rs72598684 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.44;AVGPOST=0.9939;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2866;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.62 +7 53103382 rs72598685 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.44;AVGPOST=0.9947;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2862;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.72 +7 53103554 rs11238247 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.21;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9967;ERATE=0.0009;EUR_AF=0.49;LDAF=0.3687;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 53103571 rs11238248 G A 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.20;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3655;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 53103673 rs1184320 C A 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.44;AMR_AF=0.36;AN=2;ASN_AF=0.60;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4441;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 53103946 rs12113170 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.20;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9979;ERATE=0.0002;EUR_AF=0.49;LDAF=0.3656;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 53104078 rs72598686 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.44;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3036;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 55214348 rs2072454 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.47;AMR_AF=0.47;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4546;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 55228053 rs1558544 A T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.47;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7568;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 55249063 rs1050171 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.40;AMR_AF=0.51;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.61;LDAF=0.4187;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 55266417 rs1140475 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.94;AMR_AF=0.88;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9058;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 55459563 rs2049497 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4059;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 55499058 rs815988 A G 100 PASS AA=a;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9633;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 55540707 rs815957 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.12;AMR_AF=0.48;AN=2;ASN_AF=0.48;AVGPOST=0.9965;ERATE=0.0009;EUR_AF=0.33;LDAF=0.3451;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 55912185 rs76424679 C T 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.33;AMR_AF=0.22;AN=2;ASN_AF=0.38;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2458;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 55991292 rs2174460 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=0.9928;ERATE=0.0052;EUR_AF=0.73;LDAF=0.8213;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 55991293 rs2174459 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9940;ERATE=0.0214;EUR_AF=0.19;LDAF=0.2317;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 56007576 rs34016595 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.37;AMR_AF=0.32;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3114;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 56049117 rs2304375 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0439;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 56079444 rs35136814 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0564;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-2.94 +7 56087465 rs77534057 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.48;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9929;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3162;RSQ=0.9785;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 56087474 rs77874436 A G 100 PASS AA=a;AC=1;AF=0.31;AFR_AF=0.47;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=0.9915;ERATE=0.0043;EUR_AF=0.17;LDAF=0.3112;RSQ=0.9746;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +7 56088786 rs202027697 A T 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.49;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9983;ERATE=0.0002;EUR_AF=0.18;LDAF=0.3227;RSQ=0.9939;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 56088789 rs199851385 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.49;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9980;ERATE=0.0002;EUR_AF=0.18;LDAF=0.3231;RSQ=0.9929;SNPSOURCE=EXOME;THETA=0.0082;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 56088811 rs78599516 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.49;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3243;RSQ=0.9908;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 56088825 rs74445297 T A 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.49;AMR_AF=0.26;AN=2;ASN_AF=0.39;AVGPOST=0.9975;ERATE=0.0056;EUR_AF=0.19;LDAF=0.3211;RSQ=0.9917;SNPSOURCE=EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|0:1.000:-3.70,-0.00,-5.00 +7 56122058 rs6593297 A T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.52;AMR_AF=0.62;AN=2;ASN_AF=0.67;AVGPOST=0.9803;ERATE=0.0326;EUR_AF=0.65;LDAF=0.6180;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 56125757 rs33922584 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.03;AN=2;ASN_AF=0.05;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0454;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 56126360 rs2230197 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.62;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9911;ERATE=0.0045;EUR_AF=0.69;LDAF=0.6710;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 56136260 rs4245575 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +7 56149939 rs13238521 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.08;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1248;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 56155519 rs72499804 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0359;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 56174115 rs10043 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=0.93;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.80;LDAF=0.8664;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 56174140 rs816407 G T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8670;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 57188718 rs62464802 T C 100 PASS AA=N;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.32;AN=2;ASN_AF=0.59;AVGPOST=0.9929;ERATE=0.0035;EUR_AF=0.30;LDAF=0.3290;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.74 +7 63981563 rs10243954 A G 100 PASS AA=g;AC=2;AF=0.69;AFR_AF=0.85;AMR_AF=0.67;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6865;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 64023371 rs6969879 T C 100 PASS AA=c;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.35;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3670;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 64152353 rs4718101 A G 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.56;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5471;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 64168806 rs4718103 T C 100 PASS AA=.;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.40;AN=2;ASN_AF=0.25;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3108;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +7 64169019 rs4717205 G A 100 PASS AA=.;AC=1;AF=0.84;AFR_AF=0.66;AMR_AF=0.89;AN=2;ASN_AF=0.83;AVGPOST=0.9885;ERATE=0.0123;EUR_AF=0.93;LDAF=0.8411;RSQ=0.9696;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 64169061 rs4717206 G A 100 PASS AA=.;AC=1;AF=0.92;AFR_AF=0.91;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9218;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.60 +7 64389089 rs2017252 A C 100 PASS AA=.;AC=1;AF=0.46;AFR_AF=0.36;AMR_AF=0.50;AN=2;ASN_AF=0.51;AVGPOST=0.9946;ERATE=0.0019;EUR_AF=0.46;LDAF=0.4576;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.42 +7 64438667 rs1404453 G A 100 PASS AA=.;AC=2;AF=0.89;AFR_AF=0.73;AMR_AF=0.94;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8857;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.26,-0.00 +7 64439938 rs1852016 C T 100 PASS AA=.;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9415;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 64451699 rs4717229 T C 100 PASS AA=.;AC=2;AF=0.89;AFR_AF=0.76;AMR_AF=0.95;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8938;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +7 64452830 rs34639489 C T 100 PASS AA=.;AC=2;AF=0.47;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4726;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 64453136 rs6460219 G A 100 PASS AA=.;AC=2;AF=0.89;AFR_AF=0.76;AMR_AF=0.95;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8940;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 64863392 rs10265083 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.53;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.15;LDAF=0.3091;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 64864607 rs10239197 G A 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.58;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3199;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +7 64864800 rs4122883 A G 100 PASS AA=a;AC=2;AF=0.31;AFR_AF=0.54;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.15;LDAF=0.3113;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 65554352 rs160647 C T 100 PASS AA=c;AC=2;AF=0.77;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7664;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.55,-0.01 +7 66094008 rs35526611 C T 100 PASS AA=N;AC=2;AF=0.45;AFR_AF=0.70;AMR_AF=0.44;AN=2;ASN_AF=0.23;AVGPOST=0.9835;ERATE=0.0012;EUR_AF=0.45;LDAF=0.4456;RSQ=0.9759;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +7 70231070 rs2293509 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2217;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 70252185 rs2293500 A G 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7196;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 70598059 rs2903458 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.93;AMR_AF=0.78;AN=2;ASN_AF=0.98;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.71;LDAF=0.8424;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-0.89,-0.39,-0.33 +7 71252751 rs200207748 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 71868228 rs62463250 A C 100 PASS AA=A;AC=2;AF=0.18;AFR_AF=0.01;AMR_AF=0.26;AN=2;ASN_AF=0.28;AVGPOST=0.9870;ERATE=0.0014;EUR_AF=0.19;LDAF=0.1866;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +7 72413874 rs199633193 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.19;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=0.9065;ERATE=0.0117;EUR_AF=0.42;LDAF=0.3671;RSQ=0.8736;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:1.800:-0.88,-0.39,-0.34 +7 72891754 rs2074754 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.03;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.48;LDAF=0.3713;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 73020301 rs799157 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.97;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9683;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.89,-0.00 +7 73084309 rs7795181 G C 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.02;AMR_AF=0.32;AN=2;ASN_AF=0.18;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.30;LDAF=0.2088;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.75,-0.01 +7 73097238 rs1569062 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.02;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2271;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 73101137 rs11769825 A G 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.09;AMR_AF=0.39;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2600;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 73107003 rs2293490 C A 100 PASS AA=A;AC=2;AF=0.23;AFR_AF=0.02;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2276;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 73108310 rs2293487 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.02;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2276;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 73112252 rs143987214 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 73118196 rs4363087 T C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.07;AMR_AF=0.49;AN=2;ASN_AF=0.61;AVGPOST=0.9956;ERATE=0.0022;EUR_AF=0.38;LDAF=0.3878;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +7 73151220 rs2293484 G C 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.49;AMR_AF=0.40;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3789;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73151644 rs6460052 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.82;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5847;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73245519 rs8629 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.46;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6083;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73249165 rs13246460 T A 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.46;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6079;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73249299 rs13232463 G C 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.46;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6077;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73254812 rs13241921 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.46;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6079;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73254910 rs13242043 T A 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.35;AMR_AF=0.59;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5803;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +7 73256364 rs145055366 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0128;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 73275501 rs11770024 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.41;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6074;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73275565 rs11770052 T A 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.29;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5791;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73279361 rs61742124 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.34;AMR_AF=0.23;AN=2;ASN_AF=0.09;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2025;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +7 73279482 rs13227841 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.34;AMR_AF=0.56;AN=2;ASN_AF=0.63;AVGPOST=0.9898;ERATE=0.0029;EUR_AF=0.69;LDAF=0.5726;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73280020 rs1136647 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4554;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73280145 rs191035679 C T 100 PASS AA=C;AC=1;AF=0.0041;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0043;RSQ=0.9588;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 73470714 rs2071307 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.30;AN=2;ASN_AF=0.14;AVGPOST=0.9991;ERATE=0.0019;EUR_AF=0.39;LDAF=0.2564;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 73470782 rs2856728 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.73;AMR_AF=0.81;AN=2;ASN_AF=0.72;AVGPOST=0.9963;ERATE=0.0010;EUR_AF=0.82;LDAF=0.7745;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 73732042 rs55991045 G C 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.32;AMR_AF=0.16;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1654;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 73814749 rs2522943 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9908;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 73971959 rs76184137 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9993;ERATE=0.0010;EUR_AF=0.05;LDAF=0.0215;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75168764 rs3757603 G T 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2806;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 75168788 rs3757602 G T 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2806;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 75176196 rs1167800 G A 100 PASS AA=a;AC=2;AF=0.69;AFR_AF=0.90;AMR_AF=0.69;AN=2;ASN_AF=0.69;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.55;LDAF=0.6888;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +7 75183403 rs1167807 A G 100 PASS AA=g;AC=2;AF=0.68;AFR_AF=0.88;AMR_AF=0.69;AN=2;ASN_AF=0.68;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.54;LDAF=0.6777;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0119;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 75185985 rs794368 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.56;AMR_AF=0.52;AN=2;ASN_AF=0.42;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5291;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75398998 rs2302009 A C 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.42;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2649;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 75401418 rs2240478 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.39;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2551;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75441108 rs11465315 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5075;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75441111 rs11465314 G T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.80;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5075;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0075;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75442587 rs3815261 A G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.29;LDAF=0.4163;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +7 75442730 rs2302006 T G 100 PASS AA=.;AC=2;AF=0.34;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.57;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.20;LDAF=0.3380;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 75442759 rs2302005 G A 100 PASS AA=.;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.36;AN=2;ASN_AF=0.64;AVGPOST=0.9983;ERATE=0.0007;EUR_AF=0.24;LDAF=0.3645;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +7 75513062 rs42183 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9964;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9779;RSQ=0.9392;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 75609677 rs1135612 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.40;AN=2;ASN_AF=0.45;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2864;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75614082 rs4732516 C G 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.50;AMR_AF=0.89;AN=2;ASN_AF=0.84;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8128;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75614288 rs2286822 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.21;AMR_AF=0.37;AN=2;ASN_AF=0.41;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3251;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75614296 rs2286823 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.19;AMR_AF=0.37;AN=2;ASN_AF=0.41;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3173;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75614863 rs2302431 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.49;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9500;ERATE=0.0059;EUR_AF=0.92;LDAF=0.7801;RSQ=0.9050;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.55,-0.01,-5.00 +7 75614953 rs2228104 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.56;AMR_AF=0.90;AN=2;ASN_AF=0.84;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.97;LDAF=0.8305;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +7 75630274 rs8565 T C 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.64;AMR_AF=0.69;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.70;LDAF=0.6448;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 75633209 rs2058389 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.85;AMR_AF=0.92;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 75659815 rs1044483 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.24;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.67;LDAF=0.4834;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 75677430 rs10231092 C G 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9950;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9746;RSQ=0.9218;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +7 75677504 rs17849553 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.72;AMR_AF=0.41;AN=2;ASN_AF=0.62;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.33;LDAF=0.5063;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.82 +7 75692927 rs1637037 C T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.81;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.33;LDAF=0.5256;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 75694079 rs11972240 T G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.81;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.33;LDAF=0.5255;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 76023029 rs10261314 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.71;AMR_AF=0.49;AN=2;ASN_AF=0.54;AVGPOST=0.9862;ERATE=0.0011;EUR_AF=0.46;LDAF=0.5409;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-3.11,-0.47,-0.18 +7 76029673 rs79960636 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0520;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 76029695 rs4728712 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1757;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 76063333 rs3972768 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.47;AVGPOST=0.9508;ERATE=0.0220;EUR_AF=0.42;LDAF=0.4640;RSQ=0.9356;SNPSOURCE=EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.86,-0.06 +7 76069553 rs3864552 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.37;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9578;ERATE=0.0056;EUR_AF=0.03;LDAF=0.1683;RSQ=0.8849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0281;VT=SNP GT:DS:GL 0|1:0.950:-0.07,-0.80,-5.00 +7 76069811 rs2906999 T C 100 PASS AA=N;AC=2;AF=0.50;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.48;AVGPOST=0.9646;ERATE=0.0148;EUR_AF=0.46;LDAF=0.5030;RSQ=0.9499;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +7 76071412 rs200426507 A G 100 PASS AA=a;AC=2;AF=0.81;AFR_AF=0.82;AMR_AF=0.79;AN=2;ASN_AF=0.91;AVGPOST=0.8287;ERATE=0.0068;EUR_AF=0.72;LDAF=0.7741;RSQ=0.6372;SNPSOURCE=EXOME;THETA=0.0093;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.65,-0.11 +7 76111835 rs4236506 G A 100 PASS AA=.;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2202;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0116;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 76112060 rs1638074 C T 100 PASS AA=.;AC=2;AF=0.56;AFR_AF=0.67;AMR_AF=0.56;AN=2;ASN_AF=0.54;AVGPOST=0.9936;ERATE=0.0010;EUR_AF=0.50;LDAF=0.5611;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +7 76131586 rs2690683 G A 100 PASS AA=.;AC=1;AF=0.49;AFR_AF=0.42;AMR_AF=0.53;AN=2;ASN_AF=0.50;AVGPOST=0.9479;ERATE=0.0263;EUR_AF=0.50;LDAF=0.4955;RSQ=0.8866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +7 76131645 rs6979487 A G 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.75;AN=2;ASN_AF=0.88;AVGPOST=0.9416;ERATE=0.0110;EUR_AF=0.61;LDAF=0.7278;RSQ=0.9068;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-2.97,-0.46,-0.18 +7 76131695 rs4728775 A G 100 PASS AA=.;AC=2;AF=0.69;AFR_AF=0.61;AMR_AF=0.72;AN=2;ASN_AF=0.79;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6919;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.62,-0.00 +7 76140023 rs117509972 G A 100 PASS AA=.;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0386;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 76144455 rs1799125 A C 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9915;RSQ=0.9690;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.13,-0.03 +7 76144560 rs1799126 T C 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9912;RSQ=0.9439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.71,-0.09 +7 76239480 rs200882024 C A 100 PASS AA=N;AC=1;AF=0.43;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.33;AVGPOST=0.8987;ERATE=0.0152;EUR_AF=0.45;LDAF=0.4170;RSQ=0.8506;SNPSOURCE=EXOME;THETA=0.0077;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +7 76240888 rs1134609 A G 100 PASS AA=N;AC=1;AF=0.47;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.39;AVGPOST=0.9549;ERATE=0.0173;EUR_AF=0.49;LDAF=0.4640;RSQ=0.9440;SNPSOURCE=EXOME;THETA=0.0202;VT=SNP GT:DS:GL 0|1:0.950:-1.71,-0.01,-5.00 +7 76240996 rs146744487 G A 100 PASS AA=N;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.13;AVGPOST=0.9961;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0421;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 76255019 rs56046726 T C 100 PASS AA=t;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.21;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1758;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.79 +7 76885769 rs3108428 A G 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.24;AMR_AF=0.58;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 76908199 rs3828947 A C 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.73;AMR_AF=0.32;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.33;LDAF=0.3694;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 76950035 rs6950870 C T 100 PASS AA=C;AC=2;AF=0.12;AFR_AF=0.12;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1247;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 76958730 rs10274222 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9532;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 76984572 rs2037753 G A 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.81;AMR_AF=0.48;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.31;LDAF=0.4886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 76990126 rs4727365 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.58;AMR_AF=0.25;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2785;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 76990178 rs4727366 C G 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.58;AMR_AF=0.25;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2798;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 76991935 rs1527263 C T 100 PASS AA=T;AC=2;AF=0.28;AFR_AF=0.59;AMR_AF=0.25;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2811;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 77035392 rs6949654 T C 100 PASS AA=t;AC=2;AF=0.90;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=0.90;AVGPOST=0.9966;ERATE=0.0008;EUR_AF=0.85;LDAF=0.8987;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 77200392 rs17155183 A T 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2444;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 77227241 rs6955503 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.30;LDAF=0.2404;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 77240069 rs2302473 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.0020;AMR_AF=0.32;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2418;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 77247821 rs9640663 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.86;AMR_AF=0.73;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7600;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 77256713 rs3750050 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.19;AMR_AF=0.41;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.3423;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 77423574 rs7953 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.87;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5177;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 77539744 rs711309 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.10;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.50;LDAF=0.4684;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 77552127 rs848486 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6110;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 77648671 rs13438302 G C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.47;AMR_AF=0.31;AN=2;ASN_AF=0.64;AVGPOST=0.9832;ERATE=0.0016;EUR_AF=0.21;LDAF=0.3962;RSQ=0.9765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.65,-4.70 +7 77789403 rs1009524 A G 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.14;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 78119199 rs1990577 A C 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.52;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6113;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 80087981 rs2074673 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.39;AMR_AF=0.41;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.33;LDAF=0.4691;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 80088041 rs2074674 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4609;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 80091981 rs799936 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.22;AMR_AF=0.38;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3949;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 80290369 rs3211892 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9151;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 80374342 rs1949971 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.70;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9278;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 80374438 rs1949972 T C 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.66;AMR_AF=0.91;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8478;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 80378175 rs2886793 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.77;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9470;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 80378319 rs2272351 G C 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.69;AMR_AF=0.92;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8565;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 80387766 rs1058425 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.66;AMR_AF=0.31;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3835;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 80427530 rs1527482 C T 100 PASS AA=C;AC=2;AF=0.03;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0329;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 80456841 rs4461841 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9269;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 81346685 rs1800793 T C 100 PASS AA=t;AC=2;AF=0.80;AFR_AF=0.65;AMR_AF=0.82;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7957;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 81350208 rs12536657 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.84;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8725;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +7 81359051 rs5745687 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0325;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 82453708 rs2522833 A C 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.07;AMR_AF=0.41;AN=2;ASN_AF=0.70;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4245;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 82455895 rs2715150 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.07;AMR_AF=0.41;AN=2;ASN_AF=0.70;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4242;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 82532000 rs182078347 T C 100 PASS AA=T;AC=1;AF=0.0027;AMR_AF=0.02;AN=2;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0031;RSQ=0.9389;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 82544987 rs17156844 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.50;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.20;LDAF=0.4064;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 82581859 rs976714 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.44;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3262;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 82582846 rs10954696 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.44;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.37;LDAF=0.3262;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 82764425 rs2877 C G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.67;AMR_AF=0.77;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.69;LDAF=0.7803;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 82784017 rs6951239 G T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.59;AMR_AF=0.64;AN=2;ASN_AF=0.40;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.67;LDAF=0.5766;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 82784832 rs77721383 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.25;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1014;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 83031907 rs2709930 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.85,-0.00 +7 83034754 rs2245441 T A 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.12;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5608;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 83036367 rs2245312 C G 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.12;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5608;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 83036602 rs2709941 T A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.12;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5611;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 83037731 rs61729612 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1183;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 83037751 rs2722985 C A 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.12;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5616;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 83047666 rs2713145 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.24;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 83095955 rs7806439 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.42;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3221;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 83590852 rs797821 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.47;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6225;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 83592491 rs7809708 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2221;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 83606518 rs701320 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.77;LDAF=0.8614;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 83739762 rs1990044 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.25;AMR_AF=0.55;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5261;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 83764309 rs17241389 C G 100 PASS AA=c;AC=2;AF=0.54;AFR_AF=0.33;AMR_AF=0.55;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5381;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 84628989 rs7800072 T G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.39;AMR_AF=0.26;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3060;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 84644346 rs6468008 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.78;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.54;LDAF=0.6494;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 84644500 rs17559084 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.1760;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 86800351 rs3747807 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.82;AMR_AF=0.79;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7797;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 86978347 rs802037 C A 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.88;AMR_AF=0.81;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7942;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 86998842 rs6966140 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.35;AMR_AF=0.77;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6714;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 87011349 rs31630 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.80;AMR_AF=0.88;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8218;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 87022024 rs31644 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.79;AMR_AF=0.89;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8213;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 87032613 rs31653 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8684;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 87053206 rs31668 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.87;AMR_AF=0.88;AN=2;ASN_AF=0.69;AVGPOST=0.9755;ERATE=0.0309;EUR_AF=0.89;LDAF=0.8292;RSQ=0.9391;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 87069758 rs31675 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.95;AMR_AF=0.92;AN=2;ASN_AF=0.72;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8762;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 87082292 rs1202283 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.02;AMR_AF=0.51;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3784;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 87160561 rs2032583 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.22;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1316;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87160618 rs2032582 A C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.97;AMR_AF=0.59;AN=2;ASN_AF=0.55;AVGPOST=0.9973;ERATE=0.0059;EUR_AF=0.57;LDAF=0.6585;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87165750 rs2235040 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1266;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87178626 rs2235013 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4583;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87179143 rs2235033 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4583;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87179601 rs1128503 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5771;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87180198 rs10276036 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.81;AMR_AF=0.56;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5635;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87199564 rs2235015 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.39;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2016;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87229501 rs2214102 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9600;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 87530228 rs199560047 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87737592 rs34957515 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0741;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87754915 rs17255978 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0700;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 87840263 rs6964163 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3705;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 87913361 rs1981529 C T 100 PASS AA=T;AC=1;AF=0.84;AFR_AF=0.99;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.73;LDAF=0.8389;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 88389420 rs1858848 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.66;AMR_AF=0.30;AN=2;ASN_AF=0.33;AVGPOST=0.9981;ERATE=0.0028;EUR_AF=0.25;LDAF=0.3741;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 88424115 rs2373396 C G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1609;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 88424221 rs200802688 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8999;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +7 88424291 rs4363132 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1605;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 88847451 rs111419898 A T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.73;AMR_AF=0.60;AN=2;ASN_AF=0.18;AVGPOST=0.9820;ERATE=0.0235;EUR_AF=0.65;LDAF=0.5331;RSQ=0.9801;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 88964000 rs801839 C T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.72;AMR_AF=0.36;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4799;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 88964196 rs74687205 T A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.76;AMR_AF=0.36;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4904;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 88964226 rs79931924 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.05;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0427;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 88964227 rs76870774 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.05;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0427;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 88965141 rs6962993 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.05;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0512;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 88965609 rs6963781 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.05;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0530;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 89854446 rs194520 T G 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.30;AMR_AF=0.40;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.3661;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 89856608 rs110360 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.49;AMR_AF=0.44;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4397;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 89856644 rs2016903 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.22;LDAF=0.0986;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 89861832 rs194524 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.29;AMR_AF=0.40;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3629;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 89861890 rs194525 G T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.9342;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 89861942 rs194526 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.9369;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +7 89861957 rs17621350 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1006;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 89983808 rs42663 T G 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.77;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.8195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 89984409 rs42664 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.32;AMR_AF=0.54;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5196;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 90356175 rs10240049 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.95;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9271;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 91503228 rs10266424 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.18;AMR_AF=0.48;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4122;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 91632306 rs1989779 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.87;LDAF=0.9364;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 91714911 rs1063242 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9987;RSQ=0.9516;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 92027187 rs38793 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.73;AMR_AF=0.64;AN=2;ASN_AF=0.82;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7116;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 92028039 rs38794 C A 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.22;AMR_AF=0.49;AN=2;ASN_AF=0.43;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4422;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 92131289 rs10278857 G T 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9319;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 92135686 rs10236856 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0754;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 92136447 rs74519968 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0164;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 92140397 rs2111200 C T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.36;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2719;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 92147584 rs38809 C T 100 PASS AA=c;AC=1;AF=0.89;AFR_AF=0.85;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8867;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 92244422 rs42039 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.21;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1531;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 92355033 rs34257565 T A 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0119;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 92734451 rs6965201 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.80;AMR_AF=0.51;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4977;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 92760502 rs4268 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.93;AMR_AF=0.51;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.5571;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 92762681 rs1029357 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.49;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2732;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 92764982 rs1133906 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.61;AMR_AF=0.34;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3850;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 92886812 rs722263 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.96;AMR_AF=0.53;AN=2;ASN_AF=0.63;AVGPOST=0.9978;ERATE=0.0051;EUR_AF=0.40;LDAF=0.6075;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 92970847 rs2106432 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.95;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5905;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 92985252 rs2374639 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.34;AN=2;ASN_AF=0.30;AVGPOST=0.9860;ERATE=0.0012;EUR_AF=0.29;LDAF=0.3223;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0122;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 93055650 rs1042138 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1782;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 93055753 rs1801197 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.56;AMR_AF=0.43;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.5275;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 93116299 rs2301680 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.62;AMR_AF=0.40;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5526;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 93518486 rs34489123 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.11;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0926;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 93519400 rs59740167 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.11;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0910;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 94038934 rs42518 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.82;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8578;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94039032 rs42519 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.91;AMR_AF=0.81;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8546;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94043239 rs42524 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.90;AMR_AF=0.83;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8527;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94043274 rs421587 A G 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.22;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2459;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94173803 rs13242090 T C 100 PASS AA=T;AC=2;AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1161;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94174854 rs3793326 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.33;AMR_AF=0.59;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5667;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94252752 rs2272091 T G 100 PASS AA=T;AC=2;AF=0.14;AFR_AF=0.0020;AMR_AF=0.14;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94539536 rs12536183 C T 100 PASS AA=C;AC=2;AF=0.11;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1074;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94919525 rs61749906 A G 100 PASS AA=A;AC=2;AF=0.10;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1024;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94937446 rs662 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.75;AMR_AF=0.48;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.5155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 94991632 rs17884000 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2980;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 95001555 rs1053275 C T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.49;LDAF=0.6330;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 95024046 rs11970910 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.61;AMR_AF=0.61;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.6047;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 95034821 rs9641164 A T 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.3039;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 95216394 rs4727323 T G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.61;AMR_AF=0.33;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.5521;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 95221269 rs2301630 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.62;AMR_AF=0.38;AN=2;ASN_AF=0.94;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.45;LDAF=0.6039;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 95499183 rs79162063 T C 100 PASS AA=T;AC=2;AF=0.06;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 95800820 rs2301629 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3898;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 95864108 rs6957975 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.49;AVGPOST=0.9919;ERATE=0.0231;EUR_AF=0.66;LDAF=0.6461;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 97487730 rs41278830 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.13;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1216;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 97488569 rs1049674 A T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8451;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 97488733 rs7797354 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.32;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3871;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 97736577 rs3735252 C G 100 PASS AA=C;AC=2;AF=0.09;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=0.9926;ERATE=0.0007;EUR_AF=0.05;LDAF=0.0938;RSQ=0.9684;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.600:-3.22,-0.15,-0.55 +7 97800993 rs35943072 A C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.21;AN=2;ASN_AF=0.30;AVGPOST=0.9980;ERATE=0.0021;EUR_AF=0.05;LDAF=0.1454;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 97821855 rs56204700 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1385;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 97823125 rs3801296 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1367;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 97823629 rs10268268 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1412;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 97841618 rs10270045 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.30;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1346;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +7 97847040 rs2279676 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9935;ERATE=0.0006;EUR_AF=0.20;LDAF=0.2269;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.81,-0.08,-1.89 +7 97851109 rs4729416 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.90,-0.00 +7 97852399 rs11762014 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.27;AMR_AF=0.25;AN=2;ASN_AF=0.26;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2362;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 97854393 rs2291745 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.45;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2670;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.42,-0.00,-5.00 +7 97863145 rs2291750 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.45;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2759;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.41,-0.02,-5.00 +7 97873994 rs1874344 G A 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3187;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 98460824 rs10238224 C A 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.23;AMR_AF=0.73;AN=2;ASN_AF=0.88;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.85;LDAF=0.7007;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 98461062 rs1548622 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.88;AVGPOST=0.9980;ERATE=0.0024;EUR_AF=0.91;LDAF=0.8683;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.88,-0.00 +7 98500956 rs7777927 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.23;AMR_AF=0.74;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6719;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 98513300 rs1859662 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.26;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.86;LDAF=0.6723;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 98547888 rs202055793 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 98558880 rs160384 G C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8593;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 99013772 rs150153594 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0005;RSQ=0.9181;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99023246 rs28457808 C G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.92;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.18;LDAF=0.4106;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.21 +7 99026837 rs2240385 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.08;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1285;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99032458 rs940336 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.12;AMR_AF=0.08;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1243;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99047978 rs883403 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.87;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3922;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99048432 rs2280600 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.87;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3922;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99081730 rs6962772 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.91;AMR_AF=0.31;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.17;LDAF=0.4003;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99217424 rs10282706 G A 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.68;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2799;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99227172 rs1859690 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.68;AMR_AF=0.20;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2820;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99245914 rs15524 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.69;AMR_AF=0.20;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2838;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99303094 rs12360 G A 100 PASS AA=g;AC=1;AF=0.71;AFR_AF=0.32;AMR_AF=0.78;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7130;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99306685 rs2257401 C G 100 PASS AA=N;AC=1;AF=0.73;AFR_AF=0.39;AMR_AF=0.79;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99361466 rs2242480 C T 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.83;AMR_AF=0.35;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.3346;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +7 99365943 rs2687116 C A 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.27;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.97;LDAF=0.8078;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 99474427 rs2572023 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.92;AMR_AF=0.47;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5279;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99500899 rs2247762 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3154;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99500911 rs2247761 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.89;AMR_AF=0.50;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5471;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99514417 rs2571997 A C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.89;AMR_AF=0.50;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5471;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99569394 rs17295356 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.07;AMR_AF=0.43;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4040;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99654600 rs11558475 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.12;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3277;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99654689 rs11558476 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3253;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99669802 rs11550034 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=0.9979;ERATE=0.0029;EUR_AF=0.13;LDAF=0.1095;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99686873 rs4729575 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2726;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99692993 rs2261360 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2704;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99693078 rs12267 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2700;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99696370 rs1534309 C G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.74;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8119;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99697002 rs150084480 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99699436 rs1122598 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2162;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99699626 rs2293481 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.46;AMR_AF=0.60;AN=2;ASN_AF=0.86;AVGPOST=0.9922;ERATE=0.0010;EUR_AF=0.59;LDAF=0.6327;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99701176 rs999885 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.21;AMR_AF=0.53;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5329;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99704827 rs1050542 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.34;AMR_AF=0.59;AN=2;ASN_AF=0.87;AVGPOST=0.9994;ERATE=0.0020;EUR_AF=0.60;LDAF=0.6099;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99707712 rs2272338 A G 100 PASS AA=g;AC=1;AF=0.64;AFR_AF=0.47;AMR_AF=0.61;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6408;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 99747130 rs12878 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.48;AMR_AF=0.50;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5814;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99751017 rs3736591 A G 100 PASS AA=a;AC=1;AF=0.57;AFR_AF=0.48;AMR_AF=0.48;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5695;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99753121 rs2272337 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.43;AMR_AF=0.43;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5223;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +7 99757612 rs3823646 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.32;AMR_AF=0.41;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4950;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99758136 rs3800951 T G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.41;AMR_AF=0.43;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5186;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 99772298 rs10252037 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 99796072 rs3823642 T C 100 PASS AA=.;AC=2;AF=0.36;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.56;AVGPOST=0.9892;ERATE=0.0157;EUR_AF=0.24;LDAF=0.3605;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 99796146 rs3735241 A C 100 PASS AA=.;AC=2;AF=0.52;AFR_AF=0.36;AMR_AF=0.54;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5156;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 99797031 rs2272345 C G 100 PASS AA=.;AC=2;AF=0.38;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3811;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 99799845 rs1043915 T A 100 PASS AA=.;AC=2;AF=0.39;AFR_AF=0.32;AMR_AF=0.45;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3935;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 99818101 rs4727450 G A 100 PASS AA=g;AC=2;AF=0.10;AMR_AF=0.20;AN=2;ASN_AF=0.25;AVGPOST=0.9894;ERATE=0.0005;EUR_AF=0.01;LDAF=0.1024;RSQ=0.9644;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +7 100004446 rs1476679 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.98;AMR_AF=0.78;AN=2;ASN_AF=0.68;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.69;LDAF=0.7675;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100280896 rs221793 A C 100 PASS AA=.;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9582;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100281768 rs221794 T C 100 PASS AA=.;AC=2;AF=0.88;AFR_AF=0.87;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8785;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.22,-0.00 +7 100284913 rs221796 C G 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.94;AN=2;ASN_AF=0.94;AVGPOST=0.9986;ERATE=0.0016;EUR_AF=0.89;LDAF=0.9338;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100285476 rs77794375 C T 100 PASS AA=.;AC=2;AF=0.17;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.50;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1747;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100410657 rs314358 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.60;AVGPOST=0.9895;ERATE=0.0081;EUR_AF=0.61;LDAF=0.5774;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100411278 rs314359 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.50;AMR_AF=0.61;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5905;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100416139 rs3857809 T C 100 PASS AA=C;AC=2;AF=0.24;AFR_AF=0.21;AMR_AF=0.22;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.2358;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100416250 rs144173 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.46;AMR_AF=0.61;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5849;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +7 100452239 rs3735695 C T 100 PASS AA=C;AC=2;AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0449;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100456611 rs314374 G C 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.10;AMR_AF=0.54;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4826;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100458795 rs314378 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.44;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5933;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100466441 rs2075756 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.06;AMR_AF=0.39;AN=2;ASN_AF=0.45;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2825;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +7 100468103 rs7800241 G A 100 PASS AA=g;AC=2;AF=0.28;AFR_AF=0.06;AMR_AF=0.40;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2856;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100468284 rs1054391 A G 100 PASS AA=g;AC=2;AF=0.57;AFR_AF=0.36;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5744;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100468398 rs7783543 T C 100 PASS AA=c;AC=2;AF=0.59;AFR_AF=0.43;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.51;LDAF=0.5919;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +7 100482026 rs15624 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.43;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5925;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100482526 rs6942607 C G 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.10;AMR_AF=0.54;AN=2;ASN_AF=0.81;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.46;LDAF=0.4833;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100484917 rs6954151 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.10;AMR_AF=0.54;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4822;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100486088 rs3087504 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.10;AMR_AF=0.54;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4822;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100486656 rs13241786 T G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.67;AMR_AF=0.65;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6613;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100678086 rs4729647 T C 100 PASS AA=N;AC=2;AF=0.93;AFR_AF=0.96;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9670;ERATE=0.0080;EUR_AF=0.87;LDAF=0.9218;RSQ=0.8571;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.42,-0.02 +7 100800635 rs2074686 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.37;AMR_AF=0.60;AN=2;ASN_AF=0.43;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.57;LDAF=0.4918;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100807230 rs116131136 G T 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=0.9897;ERATE=0.0005;LDAF=0.0238;RSQ=0.8565;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.650:-0.11,-0.66,-4.70 +7 100815816 rs12540617 C T 100 PASS AA=C;AC=2;AF=0.06;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.03;AVGPOST=0.9844;ERATE=0.0009;EUR_AF=0.04;LDAF=0.0646;RSQ=0.9105;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +7 100816527 rs2009973 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9383;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +7 100818101 rs733965 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.28;AMR_AF=0.63;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.63;LDAF=0.5179;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 100855001 rs2301903 C T 100 PASS AA=C;AC=2;AF=0.09;AFR_AF=0.13;AMR_AF=0.22;AN=2;ASN_AF=0.06;AVGPOST=0.9958;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0853;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +7 101265350 rs4263675 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9780;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 101713590 rs377612 T C 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8665;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 101740606 rs1637257 T G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.82;AMR_AF=0.49;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4747;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101740610 rs1734879 C A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.82;AMR_AF=0.49;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4746;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101747575 rs201480 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.81;AMR_AF=0.58;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5096;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101755060 rs9655774 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1668;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101758584 rs201501 G A 100 PASS AA=g;AC=1;AF=0.35;AFR_AF=0.50;AMR_AF=0.39;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3529;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101837149 rs11540899 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.36;AMR_AF=0.30;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2856;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101844851 rs60987662 A G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.39;AMR_AF=0.32;AN=2;ASN_AF=0.09;AVGPOST=0.9993;ERATE=0.0015;EUR_AF=0.39;LDAF=0.2979;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101870599 rs430841 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.6998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 101892121 rs410825 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.26;AMR_AF=0.47;AN=2;ASN_AF=0.89;AVGPOST=0.9698;ERATE=0.0016;EUR_AF=0.49;LDAF=0.5447;RSQ=0.9599;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +7 101892328 rs368214 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.30;AMR_AF=0.62;AN=2;ASN_AF=0.89;AVGPOST=0.9799;ERATE=0.0030;EUR_AF=0.57;LDAF=0.6010;RSQ=0.9714;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-1.21,-0.03,-5.00 +7 101916647 rs813000 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.98;AMR_AF=0.72;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7333;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101917521 rs803064 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.65;AMR_AF=0.56;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5626;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 101926087 rs73712454 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.32;AN=2;ASN_AF=0.17;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2206;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 102087202 rs1129271 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.23;AMR_AF=0.14;AN=2;ASN_AF=0.49;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.04;LDAF=0.2168;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 102108152 rs4729791 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1597;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-2.85,-0.45,-0.19 +7 102110366 rs13223494 T A 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.35;AMR_AF=0.60;AN=2;ASN_AF=0.40;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.66;LDAF=0.5152;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.05,-0.98,-5.00 +7 102112980 rs3800987 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.35;AMR_AF=0.59;AN=2;ASN_AF=0.40;AVGPOST=0.9911;ERATE=0.0036;EUR_AF=0.66;LDAF=0.5101;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.36,-0.01,-2.03 +7 102113093 rs3800988 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.48;AMR_AF=0.67;AN=2;ASN_AF=0.40;AVGPOST=0.9950;ERATE=0.0056;EUR_AF=0.74;LDAF=0.5803;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 102113256 rs72603518 T C 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.0041;AMR_AF=0.18;AN=2;ASN_AF=0.46;AVGPOST=0.9969;ERATE=0.0015;EUR_AF=0.06;LDAF=0.1725;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 102114087 rs2229796 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1770;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 102116580 rs142140094 G A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.31;AMR_AF=0.64;AN=2;ASN_AF=0.68;AVGPOST=0.8629;ERATE=0.0649;EUR_AF=0.52;LDAF=0.5148;RSQ=0.8371;SNPSOURCE=EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|1:1.750:-4.70,-0.57,-0.14 +7 102119322 rs1131325 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.32;AMR_AF=0.49;AN=2;ASN_AF=0.33;AVGPOST=0.8708;ERATE=0.0089;EUR_AF=0.53;LDAF=0.4070;RSQ=0.7979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:0.850:-0.26,-0.35,-4.70 +7 102210320 rs146014961 G C 100 PASS AA=g;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.24;AVGPOST=0.9015;ERATE=0.0088;EUR_AF=0.33;LDAF=0.3156;RSQ=0.7397;SNPSOURCE=EXOME;THETA=0.0104;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-2.98 +7 102309418 rs74556368 C A 100 PASS AA=a;AC=1;AF=0.64;AFR_AF=0.47;AMR_AF=0.73;AN=2;ASN_AF=0.65;AVGPOST=0.8675;ERATE=0.0094;EUR_AF=0.70;LDAF=0.6045;RSQ=0.7971;SNPSOURCE=EXOME;THETA=0.0133;VT=SNP GT:DS:GL 1|0:1.000:-2.29,-0.00,-4.70 +7 102668001 rs7805950 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9689;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 102739043 rs4729879 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.53;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=0.9473;ERATE=0.0404;EUR_AF=0.94;LDAF=0.8279;RSQ=0.8776;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.31,-0.02 +7 102743893 rs3181009 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.55;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8866;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 102952123 rs3087615 G T 100 PASS AA=G;AC=2;AF=0.07;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 103007949 rs4520097 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9971;ERATE=0.0019;EUR_AF=1.00;LDAF=0.9635;RSQ=0.9760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 103018016 rs10273883 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9419;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 103029915 rs62482415 A G 100 PASS AA=A;AC=2;AF=0.14;AFR_AF=0.13;AMR_AF=0.18;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1408;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 103053435 rs7779997 A G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.78;AMR_AF=0.30;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.4159;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 103138273 rs148509350 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 103138517 rs2711885 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 103138556 rs144728023 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 103175965 rs362706 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.75;AMR_AF=0.76;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.7180;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 103389954 rs607755 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.44;AMR_AF=0.48;AN=2;ASN_AF=0.39;AVGPOST=0.9969;ERATE=0.0101;EUR_AF=0.53;LDAF=0.4658;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 104717517 rs2240455 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.59;AMR_AF=0.25;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.12;LDAF=0.3960;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 104741842 rs10953468 A T 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.24;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2997;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 104742054 rs11976329 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.60;AMR_AF=0.25;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.12;LDAF=0.3816;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 104785779 rs7780887 T G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.43;AMR_AF=0.75;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.88;LDAF=0.6239;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 104800939 rs4730071 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.38;AMR_AF=0.74;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.88;LDAF=0.5959;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 105192164 rs117732387 T C 100 PASS AA=T;AC=1;AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0325;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 105205917 rs864687 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1055;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 105205955 rs861761 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1047;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 105615357 rs117170119 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9985;ERATE=0.0004;LDAF=0.0137;RSQ=0.9548;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 105615406 rs35008315 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1749;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 105615426 rs34426483 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1751;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 105621512 rs193795 G T 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4387;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 105658451 rs6967330 G A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1739;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 105662690 rs10258293 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.16;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.20;LDAF=0.1588;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 105672826 rs75850640 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.16;LDAF=0.0951;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 105732429 rs176485 T C 100 PASS AA=T;AC=2;AF=0.20;AFR_AF=0.06;AMR_AF=0.26;AN=2;ASN_AF=0.13;AVGPOST=0.9951;ERATE=0.0082;EUR_AF=0.31;LDAF=0.2011;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 105733619 rs176486 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 105739732 rs176492 C T 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1832;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 105752555 rs2240473 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.54;AVGPOST=0.9685;ERATE=0.0055;EUR_AF=0.45;LDAF=0.5048;RSQ=0.9506;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.31,-0.02 +7 105752691 rs176501 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.28;LDAF=0.1833;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +7 105903904 rs2302559 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.42;AMR_AF=0.70;AN=2;ASN_AF=0.90;AVGPOST=0.9759;ERATE=0.0351;EUR_AF=0.63;LDAF=0.6605;RSQ=0.9707;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +7 106508978 rs849389 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0019;EUR_AF=0.96;LDAF=0.9432;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 106508987 rs849390 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.86;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9448;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 106513011 rs1129293 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2610;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 106519943 rs849370 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9424;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 106685448 rs75385144 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.02;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9925;ERATE=0.0006;EUR_AF=0.34;LDAF=0.2855;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.40,-0.29,-0.31 +7 106781445 rs2302453 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.04;AMR_AF=0.48;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3574;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 106786952 rs3729876 T C 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.95;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8827;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 106799997 rs257376 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.51;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4934;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 106836242 rs3801964 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.25;AN=2;ASN_AF=0.28;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2230;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-3.70,-0.00,-5.00 +7 106965009 rs62482495 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.07;AMR_AF=0.25;AN=2;ASN_AF=0.30;AVGPOST=0.9851;ERATE=0.0111;EUR_AF=0.30;LDAF=0.2411;RSQ=0.9751;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107002806 rs2269970 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.97;AMR_AF=0.54;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6700;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107188719 rs2066735 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.18;AMR_AF=0.28;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.33;LDAF=0.2779;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107198405 rs2520272 A T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4154;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107303865 rs200139879 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0004;RSQ=0.8551;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:0.900:-5.00,0.00,-5.00 +7 107414419 rs41669 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9977;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107429932 rs144888198 T A 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0133;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 107545799 rs10263341 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.85;AMR_AF=0.62;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107559722 rs8721 A T 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3026;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107564366 rs7561 T G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.84;AMR_AF=0.61;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.58;LDAF=0.7148;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107569517 rs1131398 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.55;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0020;EUR_AF=0.39;LDAF=0.4467;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107580839 rs2158836 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.70;AMR_AF=0.63;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6983;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107593989 rs20556 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.62;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.58;LDAF=0.6961;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 107615506 rs11770141 C T 100 PASS AA=C;AC=2;AF=0.09;AFR_AF=0.10;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107626770 rs25659 G A 100 PASS AA=G;AC=2;AF=0.09;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0933;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107738836 rs6974722 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9894;ERATE=0.0082;EUR_AF=0.34;LDAF=0.2860;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 107738882 rs1735499 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.24;AMR_AF=0.38;AN=2;ASN_AF=0.25;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3161;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 107738948 rs451252 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.24;AMR_AF=0.38;AN=2;ASN_AF=0.26;AVGPOST=0.9984;ERATE=0.0032;EUR_AF=0.38;LDAF=0.3191;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 107743664 rs402113 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.22;AMR_AF=0.37;AN=2;ASN_AF=0.25;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3124;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.69,-0.00,-2.04 +7 107746214 rs430628 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.20;AMR_AF=0.39;AN=2;ASN_AF=0.39;AVGPOST=0.9912;ERATE=0.0037;EUR_AF=0.36;LDAF=0.3355;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 107746246 rs370495 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.31;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3863;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 107746253 rs420753 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.22;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3666;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 107800953 rs12670313 A G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.16;AMR_AF=0.75;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6325;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107820911 rs414077 G T 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.90;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9315;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107822396 rs2142325 G A 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.34;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7171;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107824678 rs6970656 A G 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.34;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7180;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107824889 rs401433 C G 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.35;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7184;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107825108 rs427909 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.34;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7180;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.62,-0.00 +7 107834613 rs6958498 G C 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7340;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107834624 rs6978315 T C 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7340;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107834734 rs404287 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7327;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107838464 rs381318 G T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.36;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107849908 rs1269621 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6111;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107872816 rs2072546 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.13;LDAF=0.2321;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 107875170 rs1269633 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.77;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9987;ERATE=0.0006;EUR_AF=0.84;LDAF=0.8621;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 108212353 rs1043615 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.26;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4852;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 111386365 rs3735535 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.61;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3444;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 111512032 rs10224326 A T 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.43;AMR_AF=0.20;AN=2;ASN_AF=0.15;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2471;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +7 111512630 rs28593141 T C 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.52;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.23;LDAF=0.2734;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 111541692 rs12154775 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.36;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2117;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 111580132 rs73428869 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.22;AMR_AF=0.13;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.07;LDAF=0.1828;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 111640504 rs62474283 T G 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.24;AMR_AF=0.22;AN=2;ASN_AF=0.42;AVGPOST=0.9907;ERATE=0.0007;EUR_AF=0.17;LDAF=0.2613;RSQ=0.9835;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.86,-0.00 +7 112101909 rs2708609 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.71;AMR_AF=0.57;AN=2;ASN_AF=0.20;AVGPOST=0.9758;ERATE=0.0280;EUR_AF=0.67;LDAF=0.5378;RSQ=0.9675;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 112724417 rs2256044 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9278;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 112724525 rs1608890 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9211;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 113518434 rs1799999 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2916;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 113518498 rs1800000 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0480;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 113518502 rs2974938 A T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9726;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 113519719 rs2974944 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 113519796 rs2974942 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 114210814 rs17137124 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.26;AMR_AF=0.54;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5297;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 114619598 rs2594449 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 115874560 rs2030978 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.44;AMR_AF=0.30;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3935;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 115890187 rs73222310 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0035;EUR_AF=0.19;LDAF=0.1670;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 115897392 rs4710 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3862;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 116140275 rs11767363 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.80;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8666;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 116140524 rs2270188 G T 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.33;AMR_AF=0.54;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5401;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 116146074 rs8940 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.18;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1206;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 116411867 rs35624294 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0162;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 116435768 rs41736 C T 100 PASS AA=c;AC=1;AF=0.37;AFR_AF=0.05;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.44;LDAF=0.3730;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 116436022 rs2023748 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.05;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3744;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 116436097 rs41737 G A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.05;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9982;ERATE=0.0011;EUR_AF=0.44;LDAF=0.3766;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 116528240 rs4808 C T 100 PASS AA=t;AC=1;AF=0.31;AFR_AF=0.38;AMR_AF=0.29;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3127;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 116557939 rs3173936 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.19;AMR_AF=0.26;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2646;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 117024820 rs1029396 T G 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1828;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 117188739 rs62469440 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9733;ERATE=0.0784;EUR_AF=0.12;LDAF=0.1059;RSQ=0.8834;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.800:-1.49,-0.01,-5.00 +7 117199533 rs213950 G A 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.91;AMR_AF=0.53;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5398;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 117235055 rs1042077 T G 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.69;AMR_AF=0.43;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4401;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 117450792 rs2111204 A C 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.32;AMR_AF=0.68;AN=2;ASN_AF=0.98;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.60;LDAF=0.6485;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 117824239 rs2896242 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.76;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.68;LDAF=0.7789;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.75,-0.08 +7 117825681 rs45604739 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.12;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.3812;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 120428607 rs41622 G A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.76;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8249;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 120428799 rs41623 C A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.77;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8273;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 120450658 rs7805733 G A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.76;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8237;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 120655676 rs4730984 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.20;AMR_AF=0.41;AN=2;ASN_AF=0.43;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3104;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 120704289 rs2721375 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.95;AMR_AF=0.97;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9451;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 120740103 rs798937 G T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.59;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8022;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 120764477 rs1524498 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.20;AMR_AF=0.58;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 120764573 rs798948 C A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.85;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9142;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +7 120765954 rs798949 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5356;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 120773954 rs61128227 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.03;AMR_AF=0.54;AN=2;ASN_AF=0.60;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4009;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 120776097 rs41281692 C G 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.20;AMR_AF=0.57;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5275;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 120901695 rs10953934 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.54;AMR_AF=0.33;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3415;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 120969769 rs2908004 G A 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.93;AMR_AF=0.44;AN=2;ASN_AF=0.18;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4800;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 120979089 rs2707466 C T 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.90;AMR_AF=0.44;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4716;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 121002910 rs2536163 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.47;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2157;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 121616250 rs4629793 G A 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.07;AMR_AF=0.37;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3295;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 121636647 rs7795588 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1193;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 121653177 rs61732006 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.05;LDAF=0.1110;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 121653250 rs61732005 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.05;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0896;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 121653398 rs1147504 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.93;AMR_AF=0.56;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6327;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 121698827 rs1206381 A C 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.69;AMR_AF=0.44;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4552;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 121960407 rs1348442 T G 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.26;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3687;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 121960438 rs1443749 C T 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.25;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.37;LDAF=0.3683;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 122078414 rs2074589 T G 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.43;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2995;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 122091566 rs3764810 C G 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.42;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.27;LDAF=0.2906;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +7 122635024 rs860170 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.94;AMR_AF=0.74;AN=2;ASN_AF=0.53;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.70;LDAF=0.7173;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 122774603 rs2470983 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.57;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0016;EUR_AF=0.16;LDAF=0.2871;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 122809234 rs2140516 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.25;AMR_AF=0.22;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3067;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 123097468 rs10234745 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.41;AMR_AF=0.32;AN=2;ASN_AF=0.38;AVGPOST=0.9976;ERATE=0.0072;EUR_AF=0.30;LDAF=0.3491;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123119990 rs10500091 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2582;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123120070 rs12155170 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.40;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3396;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123152019 rs10255061 C T 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.21;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2902;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123152035 rs10270705 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.34;AMR_AF=0.35;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3537;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123256427 rs6962756 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.79;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7710;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123264804 rs11769381 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.29;AMR_AF=0.48;AN=2;ASN_AF=0.57;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4414;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123267310 rs116956332 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123269118 rs4731112 G C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.82;AMR_AF=0.75;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7737;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123296320 rs12538876 C A 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.29;AMR_AF=0.48;AN=2;ASN_AF=0.58;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4489;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.27,-0.00,-5.00 +7 123388732 rs62472101 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.48;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4441;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 123594206 rs2285996 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.14;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2737;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 124387092 rs3735270 C G 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.21;AMR_AF=0.42;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4146;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 124387374 rs724356 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.37;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7418;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 124404371 rs61744942 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.25;AMR_AF=0.08;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0974;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 124404983 rs62638681 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0205;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 124469267 rs10263573 A T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.32;AMR_AF=0.42;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4301;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 124481245 rs3815221 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.32;AMR_AF=0.42;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4301;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.85 +7 124486980 rs7794637 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.71;LDAF=0.7490;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 124492038 rs7784168 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.34;AMR_AF=0.37;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2816;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 124499002 rs6977407 A C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9883;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4643;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 124499003 rs6959712 T A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9881;ERATE=0.0006;EUR_AF=0.44;LDAF=0.4650;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 126173481 rs182088200 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +7 126883197 rs769202 A C 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 126883230 rs769194 G C 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 127222157 rs3735644 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2889;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 127224193 rs3735643 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.93;AMR_AF=0.62;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7957;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 127224286 rs3735642 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.22;LDAF=0.3177;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 127236338 rs3735640 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.0923;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 127251188 rs712701 T G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.72;AMR_AF=0.78;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.78;LDAF=0.6594;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 127447499 rs325440 A T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.82;AMR_AF=0.62;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7330;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +7 127669857 rs3823994 A T 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.47;AMR_AF=0.38;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.26;LDAF=0.3213;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 127721507 rs322825 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.96;AMR_AF=0.69;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6491;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 127976119 rs359651 G T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.84;AMR_AF=0.51;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5023;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 127977304 rs11496082 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1247;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 128034467 rs72624969 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1217;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128049557 rs201236962 T C 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128133984 rs2562741 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.77;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9594;ERATE=0.0157;EUR_AF=0.98;LDAF=0.9182;RSQ=0.8308;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.99,-0.00 +7 128140982 rs10257897 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=0.9900;ERATE=0.0273;EUR_AF=0.32;LDAF=0.2884;RSQ=0.9829;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 128141865 rs1053124 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.72;AMR_AF=0.71;AN=2;ASN_AF=0.68;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.81;LDAF=0.7408;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 128312450 rs11769769 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3619;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128355458 rs3807127 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1307;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128358839 rs17162583 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1590;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128358865 rs77362226 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1339;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128371206 rs339066 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.72;AMR_AF=0.67;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6829;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128409225 rs1043550 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2340;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 128415195 rs1799922 T G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 128415860 rs3807128 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2128;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +7 128455767 rs4728137 C G 100 PASS AA=-;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9917;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +7 128455916 rs2270590 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.63;AMR_AF=0.26;AN=2;ASN_AF=0.59;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3909;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128478103 rs2291562 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.29;AMR_AF=0.12;AN=2;ASN_AF=0.34;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1841;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128480123 rs2291563 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.33;AMR_AF=0.09;AN=2;ASN_AF=0.31;AVGPOST=0.9954;ERATE=0.0052;EUR_AF=0.02;LDAF=0.1781;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128481196 rs2291565 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.40;AMR_AF=0.14;AN=2;ASN_AF=0.38;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.03;LDAF=0.2240;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128482440 rs2291566 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.40;AMR_AF=0.13;AN=2;ASN_AF=0.38;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.05;LDAF=0.2291;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128484816 rs3734973 A G 100 PASS AA=g;AC=1;AF=0.35;AFR_AF=0.59;AMR_AF=0.20;AN=2;ASN_AF=0.49;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3519;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128486258 rs200624482 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.07;AN=2;ASN_AF=0.18;AVGPOST=0.9643;ERATE=0.0086;EUR_AF=0.02;LDAF=0.0916;RSQ=0.8347;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128486363 rs34373805 C T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.57;AMR_AF=0.22;AN=2;ASN_AF=0.45;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.15;LDAF=0.3331;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128486446 rs75770585 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.18;AMR_AF=0.10;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.03;LDAF=0.1563;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128487866 rs2249128 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9906;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 128487893 rs2291568 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.37;AMR_AF=0.13;AN=2;ASN_AF=0.38;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2160;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128490553 rs13227216 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.60;AMR_AF=0.23;AN=2;ASN_AF=0.49;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3676;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128491603 rs3816884 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.14;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2387;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128495338 rs3816885 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.37;AMR_AF=0.13;AN=2;ASN_AF=0.38;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.03;LDAF=0.2159;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128607384 rs8043 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4777;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 128641226 rs2305324 G C 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3578;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 128845018 rs2703091 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.69;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7697;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 128845277 rs2075777 G C 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.68;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.81;LDAF=0.7679;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +7 128846328 rs2228617 G C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.70;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.81;LDAF=0.7714;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 128846469 rs2735842 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.70;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 128848652 rs200510336 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 128865321 rs188817853 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9917;ERATE=0.0007;LDAF=0.0109;RSQ=0.7180;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-1.44,-0.02,-5.00 +7 129019455 rs201308553 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 129037029 rs17168750 G C 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3631;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 129297332 rs1882094 T G 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.72;AMR_AF=0.35;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 129349101 rs11769146 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2244;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 129350170 rs3736626 A C 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.30;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2486;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 129351444 rs1962038 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2245;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 129663496 rs11556924 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9984;ERATE=0.0007;EUR_AF=0.38;LDAF=0.1918;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 129664312 rs1464890 T C 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.12;AMR_AF=0.51;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5018;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 129736880 rs12531444 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3469;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 129916515 rs17590 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.66;AMR_AF=0.64;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6819;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 129962360 rs1569133 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 129986338 rs6973851 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5683;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 129989878 rs7808823 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.41;AMR_AF=0.60;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5205;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 130002317 rs1544705 T C 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.37;AMR_AF=0.87;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7678;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 130021488 rs1126899 G C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.56;AN=2;ASN_AF=0.58;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5690;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 130027633 rs10263705 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.47;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4209;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 130080812 rs2287371 T G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.70;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4675;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 130138155 rs6968284 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 130140766 rs765205 C A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.21;AMR_AF=0.53;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4882;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 130144943 rs1050582 G C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.21;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=0.9884;ERATE=0.0205;EUR_AF=0.52;LDAF=0.4747;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 130418525 rs76603546 G A 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.11;AMR_AF=0.45;AN=2;ASN_AF=0.57;AVGPOST=0.9939;ERATE=0.0006;EUR_AF=0.49;LDAF=0.4205;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.500:-3.09,-0.47,-0.18 +7 131060277 rs3823557 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.31;AMR_AF=0.30;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3720;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 131155588 rs1733861 G T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.63;AMR_AF=0.40;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5557;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 131190696 rs6651125 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.33;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=0.9981;ERATE=0.0055;EUR_AF=0.37;LDAF=0.3644;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 131195712 rs12670788 G A 100 PASS AA=g;AC=1;AF=0.39;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3915;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 131195959 rs3735035 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3916;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 131815220 rs10954360 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.10;AMR_AF=0.62;AN=2;ASN_AF=0.83;AVGPOST=0.9951;ERATE=0.0066;EUR_AF=0.73;LDAF=0.5985;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 131815310 rs2671103 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.85;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8962;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 131815343 rs10954361 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.53;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7170;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 131817850 rs75848889 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1083;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 131832627 rs1450882 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9936;RSQ=0.9349;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +7 131859496 rs7808586 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.97;AMR_AF=0.70;AN=2;ASN_AF=0.71;AVGPOST=0.9979;ERATE=0.0018;EUR_AF=0.61;LDAF=0.7322;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 131859678 rs13232207 G T 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.16;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0933;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 131864591 rs3734989 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.97;AMR_AF=0.72;AN=2;ASN_AF=0.65;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.61;LDAF=0.7203;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 131864692 rs201927511 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.34,-0.26 +7 132709293 rs13235276 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.36;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3949;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 132766584 rs11769814 C G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.74;AMR_AF=0.74;AN=2;ASN_AF=0.67;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6893;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +7 133580447 rs2042456 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.69;AMR_AF=0.37;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 133749164 rs6953296 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.67;AMR_AF=0.73;AN=2;ASN_AF=0.76;AVGPOST=0.9967;ERATE=0.0087;EUR_AF=0.60;LDAF=0.6785;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 133868439 rs55857809 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1709;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 133868507 rs1222419 C T 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9945;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 133884081 rs34890031 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.17;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0434;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 133943177 rs140349215 C T 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0046;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +7 133979545 rs2504 A T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.52;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4442;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 133979552 rs2505 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.52;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4442;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 133979578 rs2241336 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.52;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4443;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 133979795 rs1421484 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.59;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4610;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 133981227 rs1862052 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.04;AMR_AF=0.46;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.45;LDAF=0.2738;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 133984878 rs34664116 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.09;AMR_AF=0.47;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2861;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 133989543 rs447266 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.54;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4159;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 134133291 rs2734653 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.02;AMR_AF=0.36;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0015;EUR_AF=0.24;LDAF=0.2995;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 134212741 rs2037005 A G 100 PASS AA=-;AC=1;AF=0.31;AFR_AF=0.36;AMR_AF=0.33;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3104;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134215403 rs1722883 T C 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.76;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5078;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134217729 rs3735041 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2468;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 134223718 rs3735042 T C 100 PASS AA=-;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0393;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 134225788 rs4732036 C T 100 PASS AA=-;AC=2;AF=0.81;AFR_AF=0.81;AMR_AF=0.80;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8126;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 134225827 rs4728329 A G 100 PASS AA=-;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9614;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 134576441 rs6953822 T C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8952;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 134849213 rs3800592 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.43;AMR_AF=0.46;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4164;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134849280 rs292501 T A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9305;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 134849577 rs2288237 A C 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.43;AMR_AF=0.46;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4164;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134871775 rs292557 C T 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.53;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7203;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134877935 rs292573 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.53;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7217;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134879830 rs292575 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.53;AMR_AF=0.80;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6559;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134880884 rs292578 G C 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.53;AMR_AF=0.80;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6535;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134889141 rs292592 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.53;AMR_AF=0.80;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6549;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134890855 rs292593 T G 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.31;AMR_AF=0.78;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.72;LDAF=0.6032;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 134891961 rs2278130 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.28;AMR_AF=0.16;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2312;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 134925411 rs7805859 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.40;AMR_AF=0.40;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.46;LDAF=0.3705;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 134928033 rs62481958 G T 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.32;AMR_AF=0.39;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3273;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 135047703 rs6969632 T C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 135095270 rs2696877 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 135099896 rs147574111 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0005;RSQ=0.8415;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 135123060 rs17480616 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0124;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 135262533 rs10252250 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.33;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3414;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 135279315 rs7800214 A C 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 135304273 rs7810767 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 135328110 rs10260691 C T 100 PASS AA=c;AC=2;AF=0.28;AFR_AF=0.23;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2797;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 135375925 rs78050425 A C 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9841;ERATE=0.0256;EUR_AF=0.23;LDAF=0.2112;RSQ=0.9588;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-3.62,-0.00,-5.00 +7 135378854 rs3800763 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2432;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 135387656 rs3112347 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.63;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6915;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 135392876 rs3110800 T C 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.60;AMR_AF=0.62;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6609;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 135406176 rs4596594 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.50;AMR_AF=0.34;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4346;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 135412273 rs3112369 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.78;AMR_AF=0.65;AN=2;ASN_AF=0.71;AVGPOST=0.9971;ERATE=0.0007;EUR_AF=0.59;LDAF=0.6745;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-0.48,-0.48,-0.48 +7 136912761 rs191694252 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +7 136939582 rs1162122 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 137092781 rs7800454 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7127;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 137128830 rs1918837 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.23;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4278;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 137150695 rs2293545 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.13;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0914;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 137237356 rs1646372 T C 100 PASS AA=T;AC=2;AF=0.12;AFR_AF=0.27;AMR_AF=0.11;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1193;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 137261940 rs834431 T G 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.52;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.07;LDAF=0.2086;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.04,-0.00 +7 137374693 rs61757580 G A 100 PASS AA=G;AC=2;AF=0.03;AFR_AF=0.0020;AMR_AF=0.13;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0270;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +7 137600690 rs273957 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.96;AMR_AF=0.64;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7843;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 138312122 rs2305816 A C 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.39;AMR_AF=0.54;AN=2;ASN_AF=0.31;AVGPOST=0.9981;ERATE=0.0014;EUR_AF=0.74;LDAF=0.5159;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 138417718 rs3807154 A G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.47;AMR_AF=0.76;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7049;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0107;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 138418910 rs1026435 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.62;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 138429823 rs55843107 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.10;AMR_AF=0.50;AN=2;ASN_AF=0.64;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.38;LDAF=0.4064;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 138486096 rs61729750 G C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.75;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6762;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 138732457 rs3735008 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.52;AMR_AF=0.39;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4388;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 138732497 rs3735007 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.73;AMR_AF=0.42;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5032;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 138738204 rs11977775 G A 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.24;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0800;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 138740037 rs2297236 G C 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.48;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0011;EUR_AF=0.56;LDAF=0.5777;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 138749582 rs75367132 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 139026152 rs10265 T G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.87;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3957;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 139102490 rs3778931 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.85;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3911;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 139138871 rs11763327 T G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.70;AMR_AF=0.40;AN=2;ASN_AF=0.33;AVGPOST=0.9863;ERATE=0.0013;EUR_AF=0.37;LDAF=0.4397;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-2.08,-0.02,-1.57 +7 139167934 rs1860150 T G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.85;AMR_AF=0.53;AN=2;ASN_AF=0.64;AVGPOST=0.9560;ERATE=0.0020;EUR_AF=0.50;LDAF=0.6164;RSQ=0.9275;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.76,-0.08,-2.35 +7 139653196 rs5768 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 139724358 rs2269996 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.33;AMR_AF=0.33;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3323;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 139724555 rs3735352 C T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.68;AMR_AF=0.37;AN=2;ASN_AF=0.49;AVGPOST=0.9939;ERATE=0.0075;EUR_AF=0.21;LDAF=0.4183;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 139727135 rs2286196 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.28;AMR_AF=0.33;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3204;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 139754451 rs2362460 T C 100 PASS AA=t;AC=1;AF=0.54;AFR_AF=0.86;AMR_AF=0.51;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.5448;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 139762273 rs737321 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.46;AVGPOST=0.9449;ERATE=0.0008;EUR_AF=0.78;LDAF=0.6705;RSQ=0.9127;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.16 +7 139762282 rs6945590 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.60;AMR_AF=0.62;AN=2;ASN_AF=0.46;AVGPOST=0.9346;ERATE=0.0028;EUR_AF=0.78;LDAF=0.6222;RSQ=0.8977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.44 +7 140051063 rs12703774 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4013;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 140051091 rs12703775 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4013;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 140051848 rs12665885 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3624;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 140069361 rs4448174 G C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5411;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 140080087 rs62490396 C G 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.21;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3880;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 140082363 rs6968618 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.71;AMR_AF=0.79;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7436;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 140218464 rs6852 C A 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.20;AMR_AF=0.45;AN=2;ASN_AF=0.81;AVGPOST=0.9855;ERATE=0.0005;EUR_AF=0.54;LDAF=0.5197;RSQ=0.9803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 140227076 rs2293178 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9934;ERATE=0.0006;LDAF=0.0151;RSQ=0.8199;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.64 +7 140257907 rs12704002 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.31;AMR_AF=0.52;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5941;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 140258000 rs12704003 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.33;AMR_AF=0.53;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5996;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 140301731 rs269243 G T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9967;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9638;RSQ=0.9607;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 140373326 rs2968558 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.69;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2495;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 140374049 rs1140034 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.69;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 140449071 rs3789806 C G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.71;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.14;LDAF=0.2741;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 140449150 rs9648696 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.72;AMR_AF=0.16;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2792;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 140476936 rs62487918 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0512;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 140500135 rs41282721 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0512;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141362431 rs6949729 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9902;RSQ=0.9666;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +7 141362693 rs2269984 A T 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.15;AMR_AF=0.40;AN=2;ASN_AF=0.51;AVGPOST=0.9783;ERATE=0.0120;EUR_AF=0.30;LDAF=0.3381;RSQ=0.9669;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141364712 rs2286150 G A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.13;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.08;LDAF=0.1679;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141365128 rs2286151 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.37;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1744;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141420707 rs6971275 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.79;AMR_AF=0.49;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5265;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141420768 rs6967301 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.79;AMR_AF=0.49;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5268;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141422926 rs147083641 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0110;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141429371 rs35683659 T G 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0125;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141463914 rs765007 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5707;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 141464765 rs2270009 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.20;AMR_AF=0.52;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4657;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141478297 rs2233996 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141478308 rs2233998 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.20;AMR_AF=0.53;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4684;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141478574 rs2234001 G C 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.34;AMR_AF=0.56;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5265;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 141478800 rs2234002 G A 100 PASS AA=g;AC=2;AF=0.49;AFR_AF=0.21;AMR_AF=0.55;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4949;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 141490238 rs2227264 G T 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.24;AMR_AF=0.54;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4895;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 141536866 rs7806190 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1673;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141537735 rs12669721 T G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.40;AMR_AF=0.56;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5425;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 141540774 rs10454325 A C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1673;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141619035 rs12671371 G A 100 PASS AA=.;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141619152 rs12671397 G A 100 PASS AA=.;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141645240 rs2293459 A C 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.17;AMR_AF=0.07;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0786;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141672604 rs10246939 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.52;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.45;LDAF=0.5476;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141672705 rs1726866 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.31;AMR_AF=0.34;AN=2;ASN_AF=0.35;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4097;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141673074 rs145970530 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141673345 rs713598 C G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.51;AMR_AF=0.61;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5292;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141736798 rs4132774 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.49;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2899;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141747658 rs2960746 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9955;RSQ=0.9343;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +7 141750472 rs62477572 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.20;AMR_AF=0.56;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.60;LDAF=0.4567;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141752213 rs2961085 C A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.03;AVGPOST=0.9925;ERATE=0.0045;EUR_AF=0.36;LDAF=0.2639;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141752215 rs116536012 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.11;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=0.9983;ERATE=0.0018;EUR_AF=0.03;LDAF=0.0515;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.00 +7 141752551 rs148040668 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0177;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141755358 rs67998329 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=0.9968;ERATE=0.0037;EUR_AF=0.19;LDAF=0.2344;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 141755795 rs57906508 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.42;AMR_AF=0.57;AN=2;ASN_AF=0.21;AVGPOST=0.9729;ERATE=0.0120;EUR_AF=0.50;LDAF=0.4190;RSQ=0.9647;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +7 141756581 rs62477618 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.21;AN=2;ASN_AF=0.20;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1915;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141759676 rs62477620 T C 100 PASS AA=t;AC=2;AF=0.19;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.18;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1892;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.34,-0.02 +7 141764164 rs10271514 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.38;AMR_AF=0.50;AN=2;ASN_AF=0.85;AVGPOST=0.9967;ERATE=0.0011;EUR_AF=0.59;LDAF=0.5977;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.03,-1.19,-5.00 +7 141796131 rs6975672 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.50;AMR_AF=0.77;AN=2;ASN_AF=0.86;AVGPOST=0.9760;ERATE=0.0049;EUR_AF=0.82;LDAF=0.7440;RSQ=0.9557;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.65,-0.11 +7 141796244 rs75355762 G T 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.25;AVGPOST=0.9958;ERATE=0.0006;EUR_AF=0.31;LDAF=0.2405;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-3.80,-0.00,-5.00 +7 141799396 rs62479371 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.25;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2447;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 141951998 rs1052410 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.31;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1819;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141952023 rs1052408 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.31;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1819;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141955128 rs1894317 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.31;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.09;LDAF=0.1815;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 141957504 rs7786497 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.31;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2879;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 142460261 rs201825825 T A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5093;RSQ=0.8964;SNPSOURCE=EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 142460335 rs201550522 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.50;LDAF=0.5005;RSQ=0.7952;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 142460744 rs150930992 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.44;AMR_AF=0.44;AN=2;ASN_AF=0.34;AVGPOST=0.9858;ERATE=0.0171;EUR_AF=0.45;LDAF=0.4184;RSQ=0.9259;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 142460865 rs6667 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.43;AMR_AF=0.54;AN=2;ASN_AF=0.24;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.59;LDAF=0.4561;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 142566163 rs6944571 C G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.91;AMR_AF=0.45;AN=2;ASN_AF=0.13;AVGPOST=0.9974;ERATE=0.0008;EUR_AF=0.50;LDAF=0.4891;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 142836203 rs73170678 A T 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.07;AN=2;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.15;LDAF=0.0686;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0136;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 142881540 rs4726600 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=0.9940;ERATE=0.0007;EUR_AF=0.26;LDAF=0.1214;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 142920042 rs149217752 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0005;LDAF=0.0090;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143017807 rs10282312 G T 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9907;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143036318 rs2272253 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.64;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4086;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143036337 rs2272252 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.64;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4086;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143042837 rs2272251 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.63;AVGPOST=0.9964;ERATE=0.0022;EUR_AF=0.46;LDAF=0.4829;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143043240 rs13438232 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.45;AMR_AF=0.34;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3633;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143043377 rs56680997 C G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.45;AMR_AF=0.34;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3633;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143053723 rs17854363 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2232;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143085819 rs6954724 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.45;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.08;LDAF=0.2672;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143088823 rs1804527 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9512;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143088867 rs6967117 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 143088897 rs62472724 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1678;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143093538 rs10952549 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.75;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9972;ERATE=0.0161;EUR_AF=0.78;LDAF=0.8431;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143095378 rs3812407 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.23;AN=2;ASN_AF=0.40;AVGPOST=0.9937;ERATE=0.0073;EUR_AF=0.13;LDAF=0.2542;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143097100 rs4725617 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.86;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.91;LDAF=0.9292;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143141475 rs4595035 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.51;AMR_AF=0.74;AN=2;ASN_AF=0.88;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6949;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143175154 rs1404635 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.26;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2259;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143175345 rs10278721 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.34;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2280;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143632618 rs2240359 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.69;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4572;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143633297 rs984764 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.71;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4867;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143657427 rs2072164 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1202;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143657473 rs2072165 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.41;AMR_AF=0.24;AN=2;ASN_AF=0.18;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.11;LDAF=0.2173;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143657801 rs2072166 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.66;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4817;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143701516 rs7787378 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.25;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1636;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143701884 rs728275 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.36;AMR_AF=0.53;AN=2;ASN_AF=0.59;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4340;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143747870 rs2961144 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.47;AMR_AF=0.28;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2473;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143748098 rs6464573 G T 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.28;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2445;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143748257 rs6464574 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.30;AMR_AF=0.26;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2045;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143748364 rs4407791 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.88;AMR_AF=0.73;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6688;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143771408 rs59319753 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3680;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143771536 rs6951485 G A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6261;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143771557 rs61731397 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.29;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.06;LDAF=0.1551;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143771937 rs2961135 G C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.70;AMR_AF=0.68;AN=2;ASN_AF=0.64;AVGPOST=0.9990;ERATE=0.0035;EUR_AF=0.46;LDAF=0.5993;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143792991 rs34947817 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.23;AMR_AF=0.13;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1281;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143793162 rs34470072 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.23;AMR_AF=0.13;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1281;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143806688 rs10230228 C A 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.39;AMR_AF=0.14;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1667;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143807304 rs10252253 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.41;AMR_AF=0.14;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1704;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143807515 rs2961149 T G 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.30;AMR_AF=0.56;AN=2;ASN_AF=0.73;AVGPOST=0.9826;ERATE=0.0028;EUR_AF=0.28;LDAF=0.4438;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143807518 rs2951315 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.30;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=0.9815;ERATE=0.0049;EUR_AF=0.28;LDAF=0.4428;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143807666 rs10249545 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.41;AMR_AF=0.14;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1704;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 143807674 rs2961150 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.34;AMR_AF=0.58;AN=2;ASN_AF=0.75;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.30;LDAF=0.4754;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 143826603 rs2961160 G T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.75;AMR_AF=0.73;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6449;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 143826697 rs2961161 C G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.80;AMR_AF=0.71;AN=2;ASN_AF=0.74;AVGPOST=0.9923;ERATE=0.0078;EUR_AF=0.45;LDAF=0.6486;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +7 143884370 rs118112343 G C 100 PASS AA=.;AC=2;AF=0.39;AFR_AF=0.21;AMR_AF=0.52;AN=2;ASN_AF=0.68;AVGPOST=0.9279;ERATE=0.0114;EUR_AF=0.22;LDAF=0.3843;RSQ=0.9122;SNPSOURCE=EXOME;THETA=0.0306;VT=SNP GT:DS:GL 1|1:1.450:-0.48,-0.48,-0.48 +7 144015437 rs150229766 C T 100 PASS AA=c;AC=2;AF=0.79;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.91;AVGPOST=0.8015;ERATE=0.0159;EUR_AF=0.70;LDAF=0.7332;RSQ=0.5479;SNPSOURCE=EXOME;THETA=0.0083;VT=SNP GT:DS:GL 1|1:1.800:-3.02,-0.47,-0.18 +7 144015658 rs200043627 C T 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.36;AMR_AF=0.36;AN=2;ASN_AF=0.62;AVGPOST=0.7277;ERATE=0.0152;EUR_AF=0.25;LDAF=0.4128;RSQ=0.4452;SNPSOURCE=EXOME;THETA=0.0150;VT=SNP GT:DS:GL 1|0:1.050:-0.48,-0.48,-0.48 +7 144015687 rs202096920 C T 100 PASS AA=c;AC=2;AF=0.70;AFR_AF=0.73;AMR_AF=0.67;AN=2;ASN_AF=0.89;AVGPOST=0.7723;ERATE=0.0136;EUR_AF=0.55;LDAF=0.6581;RSQ=0.5218;SNPSOURCE=EXOME;THETA=0.0233;VT=SNP GT:DS:GL 1|1:1.500:-0.48,-0.48,-0.48 +7 144060802 rs145771593 C T 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=0.9046;ERATE=0.0086;EUR_AF=0.28;LDAF=0.3623;RSQ=0.8146;SNPSOURCE=EXOME;THETA=0.0237;VT=SNP GT:DS:GL 0|1:1.400:-5.00,-0.64,-0.11 +7 144462951 rs3779087 C T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.87;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7139;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 146997203 rs2692185 T A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.96;AMR_AF=0.76;AN=2;ASN_AF=0.77;AVGPOST=0.9967;ERATE=0.0016;EUR_AF=0.70;LDAF=0.7870;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 147092861 rs34592169 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1115;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 147183143 rs2286127 A G 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.22;AMR_AF=0.27;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2578;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 147259374 rs2074715 A G 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4991;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 147674912 rs2373284 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.59;AMR_AF=0.49;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5631;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 147926734 rs3779031 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.26;AN=2;ASN_AF=0.32;AVGPOST=0.9982;ERATE=0.0038;EUR_AF=0.19;LDAF=0.2276;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0223;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 147926888 rs3779032 A C 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.41;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9983;ERATE=0.0104;EUR_AF=0.40;LDAF=0.3602;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0311;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 147964091 rs3801976 G A 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.80;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7841;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 148312382 rs6962115 T G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.65;AMR_AF=0.59;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5846;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148312520 rs6962292 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.65;AMR_AF=0.59;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5841;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148463860 rs1014095 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148464675 rs6956231 T G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.68;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7797;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148480990 rs10271133 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.84;AMR_AF=0.41;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3936;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 148487395 rs2007404 T C 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6751;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148508833 rs2072407 A G 100 PASS AA=a;AC=2;AF=0.70;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.65;LDAF=0.6994;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148525904 rs2302427 C G 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.07;LDAF=0.0736;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 148543525 rs10274535 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.97;AMR_AF=0.77;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7587;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148705221 rs2306172 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.97;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=1.00;LDAF=0.8888;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148712092 rs2290971 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0180;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 148801091 rs11525060 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.38;AMR_AF=0.67;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6572;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148801658 rs1137432 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.20;AMR_AF=0.64;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6120;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 148851213 rs917124 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.42;AMR_AF=0.72;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7098;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 149133916 rs11762125 C T 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0482;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 149151302 rs200964721 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +7 149152770 rs3735319 A G 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.56;AMR_AF=0.61;AN=2;ASN_AF=0.81;AVGPOST=0.9835;ERATE=0.0114;EUR_AF=0.56;LDAF=0.6367;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 149152906 rs3735318 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.42;AMR_AF=0.57;AN=2;ASN_AF=0.81;AVGPOST=0.9964;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5915;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 149191460 rs112293204 G A 100 PASS AA=.;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.32;AN=2;ASN_AF=0.45;AVGPOST=0.9974;ERATE=0.0006;EUR_AF=0.27;LDAF=0.3261;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.62 +7 149556518 rs4725833 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.79;AMR_AF=0.49;AN=2;ASN_AF=0.38;AVGPOST=0.9798;ERATE=0.0072;EUR_AF=0.59;LDAF=0.5633;RSQ=0.9710;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.00,-5.00 +7 149558409 rs2240361 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.23;AMR_AF=0.49;AN=2;ASN_AF=0.36;AVGPOST=0.9957;ERATE=0.0008;EUR_AF=0.58;LDAF=0.4316;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 149559273 rs2074700 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.23;AMR_AF=0.48;AN=2;ASN_AF=0.35;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.56;LDAF=0.4177;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 149559465 rs2074701 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.51;AN=2;ASN_AF=0.35;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.56;LDAF=0.4795;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.61,-0.12 +7 150093701 rs940453 A C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.85;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8645;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +7 150094851 rs13225910 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.34;AMR_AF=0.35;AN=2;ASN_AF=0.52;AVGPOST=0.9815;ERATE=0.0016;EUR_AF=0.43;LDAF=0.4227;RSQ=0.9702;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-0.19,-0.46,-2.46 +7 150094853 rs7780011 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.53;AMR_AF=0.52;AN=2;ASN_AF=0.31;AVGPOST=0.9838;ERATE=0.0022;EUR_AF=0.47;LDAF=0.4481;RSQ=0.9720;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.14,-0.48,-0.18 +7 150217248 rs3735081 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.96;AMR_AF=0.73;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7487;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150327195 rs117935084 C A 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0128;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150417677 rs4725358 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0711;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150488616 rs2302479 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.81;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.56;LDAF=0.6347;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150490376 rs2072443 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.27;AMR_AF=0.34;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4023;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150490431 rs2072442 C G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5472;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +7 150491084 rs3173833 T G 100 PASS AA=g;AC=2;AF=0.55;AFR_AF=0.49;AMR_AF=0.47;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5523;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150498836 rs2075079 C G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9930;ERATE=0.0006;EUR_AF=0.70;LDAF=0.7397;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +7 150499267 rs12668797 C A 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.40;AMR_AF=0.38;AN=2;ASN_AF=0.10;AVGPOST=0.9898;ERATE=0.0267;EUR_AF=0.49;LDAF=0.3490;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150500455 rs741067 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.79;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7386;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150500576 rs741065 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.17;LDAF=0.3555;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150500729 rs741064 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8866;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150501455 rs10378 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1330;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150501516 rs9088 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.79;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7367;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150554887 rs2071514 G A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.27;AMR_AF=0.30;AN=2;ASN_AF=0.48;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2911;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150555810 rs45455308 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1750;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150555915 rs10893 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.56;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9980;ERATE=0.0025;EUR_AF=0.29;LDAF=0.4273;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150556002 rs1049748 T C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.56;AMR_AF=0.48;AN=2;ASN_AF=0.59;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4941;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150556055 rs6943147 C G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=0.94;AVGPOST=0.9266;ERATE=0.0196;EUR_AF=0.91;LDAF=0.9087;RSQ=0.6889;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.60,-0.00 +7 150556056 rs6943420 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.91;AMR_AF=0.95;AN=2;ASN_AF=0.93;AVGPOST=0.9284;ERATE=0.0193;EUR_AF=0.90;LDAF=0.9074;RSQ=0.7059;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.03,-0.00 +7 150557622 rs12179 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.29;LDAF=0.4219;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150557665 rs1049793 C G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4215;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150557748 rs3735076 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.29;LDAF=0.4234;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150644394 rs3815459 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.36;AMR_AF=0.35;AN=2;ASN_AF=0.74;AVGPOST=0.9939;ERATE=0.0008;EUR_AF=0.22;LDAF=0.4084;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.35,-0.41,-0.79 +7 150645534 rs1805123 T G 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1294;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150647969 rs41258144 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.08;AVGPOST=0.9920;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2192;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150647970 rs2072412 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.31;AMR_AF=0.23;AN=2;ASN_AF=0.08;AVGPOST=0.9926;ERATE=0.0005;EUR_AF=0.25;LDAF=0.2187;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150648198 rs1137617 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.92;AMR_AF=0.68;AN=2;ASN_AF=0.88;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.60;LDAF=0.7582;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150648789 rs33959111 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.80;AMR_AF=0.47;AN=2;ASN_AF=0.85;AVGPOST=0.9986;ERATE=0.0029;EUR_AF=0.38;LDAF=0.6129;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150649531 rs1805120 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.30;AMR_AF=0.34;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.23;LDAF=0.3693;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150649603 rs740952 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0012;EUR_AF=0.23;LDAF=0.3729;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150655624 rs758891 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.55;AMR_AF=0.43;AN=2;ASN_AF=0.77;AVGPOST=0.9919;ERATE=0.0016;EUR_AF=0.32;LDAF=0.5035;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.62 +7 150695726 rs1549758 T C 100 PASS AA=N;AC=1;AF=0.78;AFR_AF=0.93;AMR_AF=0.76;AN=2;ASN_AF=0.82;AVGPOST=0.9912;ERATE=0.0043;EUR_AF=0.68;LDAF=0.7821;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150696111 rs1799983 T G 100 PASS AA=N;AC=1;AF=0.80;AFR_AF=0.94;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=0.9991;ERATE=0.0022;EUR_AF=0.68;LDAF=0.8029;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150698879 rs1800780 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.61;AMR_AF=0.64;AN=2;ASN_AF=0.63;AVGPOST=0.9973;ERATE=0.0007;EUR_AF=0.53;LDAF=0.5905;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150704250 rs2566514 C G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.57;AMR_AF=0.49;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4232;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150706383 rs753482 C A 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.95;AVGPOST=0.9944;ERATE=0.0049;EUR_AF=0.77;LDAF=0.8049;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150708089 rs891512 A G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.99;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8759;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150709571 rs7830 G T 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.17;AMR_AF=0.49;AN=2;ASN_AF=0.46;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3625;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.20,-0.03,-5.00 +7 150730999 rs4148844 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.05;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0619;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150731338 rs2303923 G C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.95;AMR_AF=0.72;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7454;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150739054 rs56198402 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0306;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150742388 rs61741011 A C 100 PASS AA=a;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.05;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0622;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150745956 rs150091812 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0093;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150748869 rs10255526 C G 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.21;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.21;LDAF=0.2773;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150751590 rs2069459 C A 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.42;AMR_AF=0.31;AN=2;ASN_AF=0.38;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3809;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150752066 rs891507 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.96;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.87;LDAF=0.9165;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +7 150752608 rs2069456 T G 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9977;ERATE=0.0009;EUR_AF=0.28;LDAF=0.3152;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150752982 rs2069454 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.08;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0442;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150753769 rs2069450 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.18;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0679;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150761314 rs2303929 G A 100 PASS AA=g;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2733;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150761880 rs2303931 C A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.33;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3546;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150763555 rs12703111 G C 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.44;AMR_AF=0.81;AN=2;ASN_AF=0.74;AVGPOST=0.9938;ERATE=0.0016;EUR_AF=0.80;LDAF=0.7064;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-0.17,-0.50,-2.91 +7 150763655 rs2229549 T A 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.33;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9946;ERATE=0.0008;EUR_AF=0.63;LDAF=0.5975;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.85,-0.01,-1.58 +7 150765065 rs2229550 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9021;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.27,-0.02 +7 150767184 rs35859353 G A 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.04;AN=2;AVGPOST=0.9984;ERATE=0.0021;EUR_AF=0.05;LDAF=0.0552;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150768786 rs2303937 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.38;AMR_AF=0.54;AN=2;ASN_AF=0.44;AVGPOST=0.9984;ERATE=0.0015;EUR_AF=0.44;LDAF=0.4432;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 150768849 rs11542749 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.21;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0644;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150768973 rs34762230 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.21;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0645;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150772333 rs35662595 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.33;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0946;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150773072 rs2303939 G C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.90;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6462;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150773489 rs2229553 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.20;AMR_AF=0.04;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0632;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.59,-0.00,-5.00 +7 150773807 rs67771563 A T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.90;AMR_AF=0.64;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6453;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.77,-0.01 +7 150778923 rs202144001 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.7844;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150916228 rs6949587 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.23;AMR_AF=0.43;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.45;LDAF=0.4557;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150921950 rs6464133 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.77;AMR_AF=0.77;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7733;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150931268 rs2608293 C G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.31;AMR_AF=0.44;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4754;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150934975 rs2487154 C G 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.68;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4655;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150939193 rs4725398 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.28;AMR_AF=0.43;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4675;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 150939359 rs219227 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.71;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7920;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 150972189 rs2072298 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.10;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.50;LDAF=0.3292;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151048484 rs449081 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.45;AMR_AF=0.81;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7212;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 151053043 rs446886 A G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.90;AVGPOST=0.9924;ERATE=0.0086;EUR_AF=0.68;LDAF=0.7022;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 151064064 rs386956 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.18;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.63;LDAF=0.4791;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 151074296 rs2159158 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.15;AMR_AF=0.45;AN=2;ASN_AF=0.51;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4270;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151097323 rs11767693 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.82;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7416;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 151127086 rs199515629 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.8316;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +7 151168534 rs6956899 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.57;AMR_AF=0.48;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5068;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151573731 rs66628686 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1862;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +7 151680072 rs6960270 T C 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9989;ERATE=0.0012;EUR_AF=0.86;LDAF=0.8254;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151680175 rs35682935 C T 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1239;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 151818777 rs967093 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 151842397 rs2240819 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1404;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151847946 rs3757422 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.06;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0805;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151873853 rs6464211 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.73;AMR_AF=0.25;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3447;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151874498 rs10252263 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1403;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151884607 rs3800834 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1408;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151902343 rs10265729 G A 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9988;ERATE=0.0012;EUR_AF=0.01;LDAF=0.1386;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:0.950:-1.02,-0.04,-5.00 +7 151944961 rs1623137 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=0.9588;ERATE=0.0314;EUR_AF=0.07;LDAF=0.0660;RSQ=0.7222;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 151948999 rs187080406 A T 100 PASS AA=a;AC=1;AF=0.0037;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.01;LDAF=0.0037;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 151949068 rs3735156 C G 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.49;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1511;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 151962309 rs201948579 G A 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=0.9522;ERATE=0.0441;EUR_AF=0.08;LDAF=0.0959;RSQ=0.7782;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-3.80,-0.00,-5.00 +7 152346007 rs3218536 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0429;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 152498667 rs112156405 C T 100 PASS AA=c;AC=1;AF=0.30;AFR_AF=0.14;AMR_AF=0.25;AN=2;ASN_AF=0.38;AVGPOST=0.8755;ERATE=0.0790;EUR_AF=0.35;LDAF=0.3368;RSQ=0.6556;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.750:-0.18,-0.47,-2.37 +7 152511598 rs112910296 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.85;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=0.9223;ERATE=0.0155;EUR_AF=0.70;LDAF=0.7680;RSQ=0.8635;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.90,-0.06 +7 154748908 rs3817480 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.41;AMR_AF=0.72;AN=2;ASN_AF=0.57;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5765;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 154862591 rs1800883 G C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.41;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9957;ERATE=0.0161;EUR_AF=0.41;LDAF=0.4493;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 155093925 rs73485859 A T 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.01;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0658;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 155301736 rs116523217 C T 100 PASS AA=C;AC=1;AF=0.0014;AFR_AF=0.0041;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0006;LDAF=0.0014;RSQ=0.9244;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 155503920 rs7800753 A T 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.53;AMR_AF=0.53;AN=2;ASN_AF=0.66;AVGPOST=0.9952;ERATE=0.0010;EUR_AF=0.74;LDAF=0.6377;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 155530954 rs2178428 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.50;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3130;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 155531080 rs3735576 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.70;AMR_AF=0.29;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.19;LDAF=0.3606;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 155596353 rs9333634 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9968;ERATE=0.0006;LDAF=0.0125;RSQ=0.8966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0276;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 156468377 rs67486611 G C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.68;AMR_AF=0.35;AN=2;ASN_AF=0.51;AVGPOST=0.9880;ERATE=0.0117;EUR_AF=0.32;LDAF=0.4525;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156468378 rs2886381 C A 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9885;ERATE=0.0201;EUR_AF=0.25;LDAF=0.3301;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156469096 rs2302149 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4445;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156469133 rs2302147 C G 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.53;AMR_AF=0.37;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4174;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156469179 rs2302146 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.53;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.9990;ERATE=0.0011;EUR_AF=0.38;LDAF=0.4211;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156469190 rs2302145 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.82;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9979;ERATE=0.0025;EUR_AF=0.42;LDAF=0.5424;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156742501 rs6969990 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.29;AVGPOST=0.9931;ERATE=0.0008;EUR_AF=0.17;LDAF=0.2115;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.89,-0.39,-0.33 +7 156742749 rs6969196 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.28;AVGPOST=0.9946;ERATE=0.0008;EUR_AF=0.16;LDAF=0.2078;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.17,-0.50,-2.89 +7 156742796 rs6952214 A C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.25;AVGPOST=0.9895;ERATE=0.0008;EUR_AF=0.16;LDAF=0.2037;RSQ=0.9749;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-2.84,-0.00,-5.00 +7 156742868 rs199647631 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9978;ERATE=0.0007;LDAF=0.0016;RSQ=0.4188;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.00 +7 156742965 rs61734937 G C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.19;AN=2;ASN_AF=0.29;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2166;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156745224 rs59371845 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.18;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0439;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156754981 rs3750131 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9994;ERATE=0.0036;EUR_AF=0.22;LDAF=0.2508;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 156761751 rs9969350 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.47;AMR_AF=0.54;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4589;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 156761818 rs2302445 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.47;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4593;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 156761913 rs2302444 C T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.47;AMR_AF=0.51;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4443;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 156762224 rs2302443 G C 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.49;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4639;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 156762248 rs12919 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.56;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4799;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 156762446 rs3087905 G T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4685;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 156971581 rs870745 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.93;AMR_AF=0.60;AN=2;ASN_AF=0.52;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.49;LDAF=0.6161;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 157000176 rs2301914 T C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.80;AMR_AF=0.43;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 157151234 rs3802100 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.47;AMR_AF=0.63;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6088;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 157208704 rs78337193 C T 100 PASS AA=C;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0041;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 157370688 rs122004 C G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.94;LDAF=0.8995;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 157873975 rs3800863 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.54;AMR_AF=0.60;AN=2;ASN_AF=0.91;AVGPOST=0.9989;ERATE=0.0012;EUR_AF=0.67;LDAF=0.6945;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 157903478 rs3800861 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.67;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.66;LDAF=0.6601;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +7 157926349 rs17847428 T G 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.46;AMR_AF=0.33;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.30;LDAF=0.3093;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 157930979 rs3752367 C G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.48;AMR_AF=0.37;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4099;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 157931119 rs1130500 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.49;AMR_AF=0.37;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4127;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 157931144 rs1130499 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.48;AMR_AF=0.37;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4103;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 157931151 rs150508509 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0133;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 157959620 rs10277232 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3572;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.00,-0.46,-0.18 +7 157959636 rs10246889 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.41;AMR_AF=0.72;AN=2;ASN_AF=0.76;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.72;LDAF=0.6582;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.68,-0.10 +7 157959794 rs73745196 T C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0224;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +7 157959870 rs112343839 G T 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0129;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +7 157959879 rs1130497 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3537;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 157959888 rs73745197 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0224;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 157959895 rs1130496 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3538;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 157959911 rs1130495 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.90;AMR_AF=0.90;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8862;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 157985171 rs140977880 C T 100 PASS AA=C;AC=1;AF=0.0041;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9992;ERATE=0.0003;LDAF=0.0039;RSQ=0.9296;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 157985218 rs143377636 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0101;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 158109537 rs138046898 A C 100 PASS AA=A;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.17 +7 158109572 rs146018380 G A 100 PASS AA=G;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158438186 rs2290393 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.41;AMR_AF=0.61;AN=2;ASN_AF=0.45;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5336;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158444975 rs1466210 T G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.69;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=0.9974;ERATE=0.0011;EUR_AF=0.72;LDAF=0.7880;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 158455089 rs4484634 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9432;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 158457458 rs3816466 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.34;AMR_AF=0.34;AN=2;ASN_AF=0.40;AVGPOST=0.9950;ERATE=0.0043;EUR_AF=0.26;LDAF=0.3291;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 158526880 rs3750051 G A 100 PASS AA=c;AC=1;AF=0.27;AFR_AF=0.34;AMR_AF=0.18;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0021;EUR_AF=0.06;LDAF=0.2655;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158528158 rs3816461 C G 100 PASS AA=G;AC=1;AF=0.93;AFR_AF=0.83;AMR_AF=0.94;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9273;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158528170 rs7787974 G A 100 PASS AA=A;AC=1;AF=0.93;AFR_AF=0.85;AMR_AF=0.94;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9328;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158528233 rs3816462 A G 100 PASS AA=a;AC=1;AF=0.33;AFR_AF=0.42;AMR_AF=0.18;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.17;LDAF=0.3327;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158529704 rs6960873 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.17;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3213;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158529889 rs2305467 T G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.17;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3213;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158531692 rs7804970 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.17;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3219;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158534372 rs57686648 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.18;AN=2;ASN_AF=0.56;AVGPOST=0.9950;ERATE=0.0043;EUR_AF=0.17;LDAF=0.3081;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158534381 rs59980573 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.19;AN=2;ASN_AF=0.56;AVGPOST=0.9971;ERATE=0.0017;EUR_AF=0.17;LDAF=0.3205;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158536267 rs2305473 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.17;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3205;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158536334 rs2305474 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.28;AMR_AF=0.12;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2398;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158536345 rs2305475 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.17;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3204;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158536376 rs2305476 A C 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.17;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3199;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158536388 rs2305477 A C 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.17;AN=2;ASN_AF=0.56;AVGPOST=0.9972;ERATE=0.0021;EUR_AF=0.17;LDAF=0.3145;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158536408 rs71547564 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.37;AMR_AF=0.17;AN=2;ASN_AF=0.55;AVGPOST=0.9964;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3049;RSQ=0.9945;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-1.71,-0.01,-5.00 +7 158536411 rs71547565 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.37;AMR_AF=0.17;AN=2;ASN_AF=0.55;AVGPOST=0.9963;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3050;RSQ=0.9944;SNPSOURCE=EXOME;THETA=0.0067;VT=SNP GT:DS:GL 0|1:1.000:-1.15,-0.03,-5.00 +7 158662642 rs116625827 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0069;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158672476 rs2709859 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9962;RSQ=0.9710;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 158672619 rs2788478 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.69;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5446;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158711584 rs10279428 A G 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.26;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1512;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158715219 rs62862160 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8805;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 158715264 rs6459913 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.53;AMR_AF=0.32;AN=2;ASN_AF=0.58;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4185;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158716221 rs114475809 A C 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0110;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158716224 rs115436921 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0110;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158719084 rs2244789 C T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.63;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9985;ERATE=0.0016;EUR_AF=0.78;LDAF=0.7920;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +7 158719139 rs11505215 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0124;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158827326 rs2071624 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.24;AMR_AF=0.28;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0024;EUR_AF=0.25;LDAF=0.3321;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158851234 rs2098349 T G 100 PASS AA=g;AC=2;AF=0.87;AFR_AF=0.56;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8720;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +7 158896436 rs17837874 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.41;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.09;LDAF=0.1581;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158896517 rs2270313 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.34;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2569;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +7 158902567 rs3750071 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 335175 rs2671431 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 348080 rs2797333 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 350829 rs1129085 G A 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.46;AMR_AF=0.37;AN=2;ASN_AF=0.50;AVGPOST=0.9982;ERATE=0.0114;EUR_AF=0.35;LDAF=0.4177;RSQ=0.9932;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 497520 rs6909878 G C 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.06;AMR_AF=0.37;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4361;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 564515 rs2277096 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.14;AMR_AF=0.56;AN=2;ASN_AF=0.41;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4004;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 572480 rs2073009 G A 100 PASS AA=g;AC=1;AF=0.49;AFR_AF=0.38;AMR_AF=0.63;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.57;LDAF=0.4900;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 576902 rs708038 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2229;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 599042 rs2294664 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.35;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5361;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 656143 rs1211554 C A 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.43;AMR_AF=0.87;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0024;EUR_AF=0.91;LDAF=0.7774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 1624512 rs11759759 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.11;AN=2;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0626;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +6 1726623 rs960295 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2231;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 2623820 rs6902511 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3061;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 2623930 rs9503233 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1170;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 2675271 rs9328114 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.21;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2305;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 2679676 rs12523992 G A 100 PASS AA=g;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2271;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 2683439 rs898772 T A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.84;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9465;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 2685677 rs966232 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.78;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7920;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 2766144 rs17851692 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.31;AN=2;ASN_AF=0.36;AVGPOST=0.8923;ERATE=0.0118;EUR_AF=0.34;LDAF=0.3418;RSQ=0.8246;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-0.06,-0.88,-5.00 +6 2766727 rs3757094 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.21;AMR_AF=0.27;AN=2;ASN_AF=0.37;AVGPOST=0.9775;ERATE=0.0066;EUR_AF=0.32;LDAF=0.3051;RSQ=0.9631;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.01 +6 2834265 rs386915 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.59;AMR_AF=0.78;AN=2;ASN_AF=0.74;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6977;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 2836266 rs385955 T A 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.45;AMR_AF=0.66;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.59;LDAF=0.5730;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 2838102 rs316340 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.12;AMR_AF=0.56;AN=2;ASN_AF=0.57;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.53;LDAF=0.4530;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 2838248 rs316341 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.61;AMR_AF=0.77;AN=2;ASN_AF=0.73;AVGPOST=0.9976;ERATE=0.0043;EUR_AF=0.70;LDAF=0.6990;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.84,-0.00 +6 2896280 rs76406624 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0410;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 2948965 rs318426 C T 100 PASS AA=T;AC=1;AF=0.88;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.85;LDAF=0.8767;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 2953252 rs2244693 T C 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.44;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=0.9992;ERATE=0.0027;EUR_AF=0.70;LDAF=0.6717;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 2953445 rs3818276 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.89;AMR_AF=0.84;AN=2;ASN_AF=0.96;AVGPOST=0.9994;ERATE=0.0032;EUR_AF=0.85;LDAF=0.8892;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 2955802 rs2295769 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2409;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 3006807 rs4149360 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1419;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 3010390 rs1143684 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.98;AMR_AF=0.77;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8021;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 3010459 rs2475208 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.61;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5347;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 3015790 rs1049115 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.94;AMR_AF=0.73;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7617;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 3019927 rs6955 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.21;AMR_AF=0.24;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1814;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 3077141 rs2272990 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.79;AMR_AF=0.90;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.92;LDAF=0.8478;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 3154871 rs17849443 A C 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.14;AMR_AF=0.45;AN=2;ASN_AF=0.34;AVGPOST=0.9545;ERATE=0.0260;EUR_AF=0.53;LDAF=0.3753;RSQ=0.9366;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.08,-0.77 +6 3285286 rs10793841 A G 100 PASS AA=a;AC=2;AF=0.60;AFR_AF=0.12;AMR_AF=0.74;AN=2;ASN_AF=0.55;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.89;LDAF=0.6044;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 3287118 rs6910086 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.96;AMR_AF=0.89;AN=2;ASN_AF=0.68;AVGPOST=0.9948;ERATE=0.0008;EUR_AF=0.95;LDAF=0.8693;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +6 3410376 rs78994264 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0119;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 3727811 rs226959 C G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.70;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6494;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 3738248 rs114032149 A T 100 PASS AA=A;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0042;RSQ=0.9771;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +6 4031998 rs9503893 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7116;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4037582 rs7763233 C A 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.73;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7178;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4044297 rs853396 G T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.74;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7198;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4052167 rs3747761 C A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.74;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7194;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4052171 rs72841286 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.09;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0737;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 4057233 rs853407 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.74;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7202;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4057429 rs853408 A G 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.73;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7186;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4069166 rs595413 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.16;AMR_AF=0.64;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5654;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 4087948 rs9503910 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0183;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4119516 rs2326408 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.82;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5004;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4133766 rs853421 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1394;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 4892015 rs61747454 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0091;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 4998963 rs1749144 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.53;AMR_AF=0.34;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3110;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 5000027 rs439795 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.34;AMR_AF=0.26;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2226;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 5000779 rs7744457 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.57;AMR_AF=0.34;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3208;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 5999464 rs3749860 C G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.62;AMR_AF=0.50;AN=2;ASN_AF=0.31;AVGPOST=0.9991;ERATE=0.0015;EUR_AF=0.66;LDAF=0.5335;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 6152007 rs5980 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1891;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 6152137 rs5988 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1892;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 6152140 rs5987 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0672;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 6152211 rs2274394 C G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1892;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 6174786 rs380058 G C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9606;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7187651 rs199886615 T G 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +6 7211818 rs1334576 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4247;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 7229346 rs2714315 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.77;AMR_AF=0.23;AN=2;ASN_AF=0.29;AVGPOST=0.9948;ERATE=0.0022;EUR_AF=0.34;LDAF=0.4029;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 7230680 rs9502564 G T 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=0.9569;ERATE=0.0189;EUR_AF=0.27;LDAF=0.4650;RSQ=0.9409;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 7231843 rs9379084 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=0.9915;ERATE=0.0099;EUR_AF=0.13;LDAF=0.1106;RSQ=0.9668;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.23 +6 7232186 rs9505086 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.53;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9950;ERATE=0.0088;EUR_AF=0.40;LDAF=0.4141;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 7246998 rs2281833 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.21;AN=2;ASN_AF=0.29;AVGPOST=0.9825;ERATE=0.0021;EUR_AF=0.15;LDAF=0.1865;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.07,-0.85 +6 7247248 rs2256596 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.95;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9906;ERATE=0.0007;EUR_AF=0.65;LDAF=0.7476;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.18,-0.00 +6 7295605 rs9502587 A G 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.30;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=0.9939;ERATE=0.0137;EUR_AF=0.43;LDAF=0.3983;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7295755 rs2714361 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.95;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7971;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7303735 rs9505131 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.44;AMR_AF=0.43;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4977;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7310259 rs10004 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.49;AMR_AF=0.18;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2939;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 7368917 rs1324502 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.87;AMR_AF=0.50;AN=2;ASN_AF=0.56;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5633;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.83,-0.00 +6 7374207 rs2876098 T G 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1266;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 7404269 rs140810129 A T 100 PASS AA=a;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 7414657 rs4960314 T C 100 PASS AA=t;AC=1;AF=0.89;AFR_AF=0.74;AMR_AF=0.94;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8871;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 7563983 rs2806234 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7567970 rs2076296 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7897;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7572026 rs2076303 T A 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.35;AMR_AF=0.50;AN=2;ASN_AF=0.78;AVGPOST=0.9929;ERATE=0.0043;EUR_AF=0.38;LDAF=0.4966;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7572262 rs2076304 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.81;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7906;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7574852 rs2295859 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0659;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 7576527 rs1016835 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.61;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7496;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7578819 rs2806229 T G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.62;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7522;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7578823 rs2842691 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.72;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7765;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7585967 rs2744380 G C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.59;AMR_AF=0.74;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7112;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7862556 rs61733611 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0192;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 7862589 rs17558 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0348;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 7862631 rs17557 G C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.74;AMR_AF=0.58;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.40;LDAF=0.5927;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7879407 rs267172 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.80;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0047;EUR_AF=0.46;LDAF=0.6513;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 7883468 rs111331197 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0049;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 7889088 rs1225944 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.89;AMR_AF=0.59;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.6408;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 8016089 rs2057185 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.60;AMR_AF=0.81;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8094;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 8026577 rs9328452 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.52;AMR_AF=0.65;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6924;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 8413890 rs3757099 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.68;AMR_AF=0.24;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3103;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 8430049 rs6918877 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.72;AMR_AF=0.52;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5063;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +6 10398707 rs3734391 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.15;LDAF=0.0955;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 10398982 rs79469538 A T 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.72;AMR_AF=0.28;AN=2;ASN_AF=0.31;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.14;LDAF=0.3379;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 10587038 rs539351 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 10764727 rs126405 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.81;LDAF=0.8654;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 10802101 rs4712966 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.17;AMR_AF=0.53;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4662;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 10891781 rs1538441 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9880;RSQ=0.9811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 10955408 rs1225746 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.79;AMR_AF=0.94;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8866;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 10983971 rs4532436 C G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.58;AMR_AF=0.62;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6229;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 10989942 rs12195587 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0658;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 11005842 rs2295602 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6545;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 11011074 rs9380025 T G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.90;AVGPOST=0.9945;ERATE=0.0039;EUR_AF=0.44;LDAF=0.6491;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 11185533 rs1050775 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.66;AMR_AF=0.40;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4900;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 11190626 rs941982 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.95;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9246;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 11192575 rs1465131 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.84;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8962;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 11193860 rs16871074 G A 100 PASS AA=g;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.21;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1922;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 11213468 rs12215094 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.47;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2537;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 11213832 rs3734404 T C 100 PASS AA=N;AC=2;AF=0.45;AFR_AF=0.59;AMR_AF=0.38;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4511;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 11538534 rs821443 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=0.9931;ERATE=0.0011;EUR_AF=0.27;LDAF=0.2146;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.28,-0.32,-4.22 +6 11723538 rs210905 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.86;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8711;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 11723539 rs77836444 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9973;ERATE=0.0032;EUR_AF=0.07;LDAF=0.0527;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 12120090 rs3800499 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.26;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2574;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 12120445 rs2228215 A G 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2376;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 12120588 rs2228209 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2239;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 12122174 rs2228210 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2245;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 12122645 rs6900196 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 12122773 rs2228211 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.29;AN=2;ASN_AF=0.50;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2774;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 12124855 rs2228213 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2349;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 12292772 rs2070699 G T 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.05;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4018;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 12294258 rs5369 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.84;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9017;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 13307824 rs2439537 C T 100 PASS AA=c;AC=2;AF=0.28;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2774;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 13321097 rs2496132 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.35;AMR_AF=0.27;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2327;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 13325279 rs2439553 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.73;AMR_AF=0.41;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5220;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +6 13365913 rs9367440 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.08;AMR_AF=0.55;AN=2;ASN_AF=0.70;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4814;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 13592135 rs3734674 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0035;EUR_AF=0.33;LDAF=0.2436;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 13612078 rs34162626 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.14;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0443;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 13659079 rs204232 T G 100 PASS AA=t;AC=1;AF=0.64;AFR_AF=0.84;AMR_AF=0.66;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6357;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 13794110 rs4715568 C A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6194;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0113;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 13801615 rs3180196 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1581;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 13814340 rs1204145 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.65;AMR_AF=0.63;AN=2;ASN_AF=0.64;AVGPOST=0.8356;ERATE=0.0075;EUR_AF=0.60;LDAF=0.6101;RSQ=0.7232;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:1.700:-0.48,-0.48,-0.48 +6 14118138 rs2235368 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.47;AMR_AF=0.33;AN=2;ASN_AF=0.11;AVGPOST=0.9965;ERATE=0.0008;EUR_AF=0.22;LDAF=0.2658;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +6 15374508 rs9383050 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9959;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 15513482 rs2235258 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.31;AMR_AF=0.67;AN=2;ASN_AF=0.66;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.75;LDAF=0.6163;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.07 +6 15523448 rs17470454 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0302;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 15593240 rs7758659 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8711;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 16145325 rs9370867 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.95;AMR_AF=0.66;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7413;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 17543036 rs2296249 A G 100 PASS AA=a;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.61;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6353;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 17543302 rs9256 A G 100 PASS AA=g;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.61;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6360;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 17600619 rs6919110 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9965;ERATE=0.0005;EUR_AF=0.26;LDAF=0.1942;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-0.17,-0.50,-2.89 +6 17605106 rs6916441 A C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.22;AMR_AF=0.22;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2719;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 17629616 rs942467 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0036;EUR_AF=0.99;LDAF=0.8875;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 17633061 rs2274136 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.77;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8218;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 17665479 rs6906499 G C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.27;LDAF=0.2706;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 17675246 rs2228375 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.05;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1422;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 17688798 rs11751113 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.39;LDAF=0.2743;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 17790191 rs2147211 A G 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.57;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3107;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 17799575 rs3734235 A G 100 PASS AA=A;AC=2;AF=0.18;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1791;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 17809199 rs6913612 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 17817235 rs9383327 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.87;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.93;LDAF=0.9366;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +6 17831419 rs2277080 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2070;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 17834198 rs4716189 T G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.31;AMR_AF=0.48;AN=2;ASN_AF=0.40;AVGPOST=0.9989;ERATE=0.0013;EUR_AF=0.49;LDAF=0.4224;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +6 17834213 rs4716190 T C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.39;AMR_AF=0.51;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4575;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +6 17834316 rs4716191 T C 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.48;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4210;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 17834328 rs4716192 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.31;AMR_AF=0.48;AN=2;ASN_AF=0.40;AVGPOST=0.9928;ERATE=0.0057;EUR_AF=0.49;LDAF=0.4259;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +6 17834346 rs4716193 A G 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.48;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4211;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +6 17855864 rs624105 G C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.91;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7853;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 18122526 rs115931931 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.26;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1162;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-3.08,-0.00,-3.52 +6 18130918 rs1142345 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.10;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0462;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 18139214 rs2842934 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.80;AMR_AF=0.75;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.7733;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 18139228 rs1800460 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 18148019 rs4449636 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.75;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.54;LDAF=0.5435;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 18161563 rs4716224 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.14;AMR_AF=0.33;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3418;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 18208319 rs214596 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.42;AMR_AF=0.35;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3213;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 18213988 rs6903583 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1595;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 18215303 rs214585 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9631;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 18222100 rs3734242 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1660;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 18237661 rs1013062 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1677;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 18264210 rs11544757 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1669;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-5.00 +6 18399750 rs2296198 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6937;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 20481678 rs4134938 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.0017;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1264;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 22570189 rs6922960 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.18;AVGPOST=0.9955;ERATE=0.0008;EUR_AF=0.27;LDAF=0.2433;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.38 +6 22570245 rs6900627 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.22;AMR_AF=0.21;AN=2;ASN_AF=0.0017;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.26;LDAF=0.1753;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.55,-0.00,-4.10 +6 24174955 rs9358755 G C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.41;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7601;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 24291203 rs2274305 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.05;AMR_AF=0.67;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.68;LDAF=0.5498;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24302087 rs807703 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9854;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 24403455 rs11695 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1290;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24405357 rs2273606 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1289;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24416593 rs75878386 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1289;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24418348 rs2793422 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.2313;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 24418786 rs79527965 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1316;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24418854 rs45590133 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1289;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24433483 rs9461006 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.12;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1856;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24437445 rs1772256 G A 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9324;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 24437458 rs1042303 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.28;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3279;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 24448061 rs796985 A C 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.34;AMR_AF=0.66;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.85;LDAF=0.5910;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 24463020 rs17300770 G C 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0038;EUR_AF=0.17;LDAF=0.1078;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24463055 rs2793442 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.76;AMR_AF=0.49;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0028;EUR_AF=0.54;LDAF=0.5807;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24467366 rs6928435 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.54;AMR_AF=0.17;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2345;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24475300 rs6901703 A T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.54;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2335;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24476553 rs760904 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.61;AMR_AF=0.60;AN=2;ASN_AF=0.48;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6220;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 24523174 rs67603730 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.22;AMR_AF=0.14;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1618;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24547606 rs2817245 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.37;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2121;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24551624 rs2076313 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.52;AMR_AF=0.20;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2646;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24554762 rs2243831 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.52;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2610;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24559433 rs3903801 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.32;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2591;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 24581283 rs807508 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0915;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24588884 rs4504469 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2331;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 24589034 rs115399701 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0110;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24596478 rs4576240 T G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.95;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.90;LDAF=0.9420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 24651320 rs3181245 C G 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.44;AMR_AF=0.40;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0014;EUR_AF=0.46;LDAF=0.3877;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0114;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 24653376 rs1129644 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.92;AMR_AF=0.82;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.7925;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 24698215 rs7765904 G A 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.14;AMR_AF=0.15;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.24;LDAF=0.1573;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 24780944 rs2307300 A C 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0169;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 24869300 rs2817747 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.55;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.36;LDAF=0.3855;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 25682262 rs3765236 A C 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.13;AMR_AF=0.45;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3162;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 25689487 rs2294346 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.26;AMR_AF=0.49;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4821;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25691362 rs17492659 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.14;LDAF=0.0855;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25726343 rs6940348 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.85;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9525;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 25727527 rs17320558 T A 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1051;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25769349 rs1892251 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.68;AMR_AF=0.90;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.90;LDAF=0.8743;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 25776949 rs11754288 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2413;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 25813150 rs1165196 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.92;AMR_AF=0.69;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7403;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25849620 rs942379 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.92;AMR_AF=0.68;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.7253;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25850845 rs56027330 C T 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.0708;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25862466 rs1165165 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.33;AMR_AF=0.20;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.2285;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25914801 rs2071299 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4260;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25914901 rs2071298 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4260;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25916979 rs1865760 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4259;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25918688 rs3752421 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.41;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4337;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 25924158 rs1540273 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4260;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26027135 rs3752420 G A 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.16;AMR_AF=0.39;AN=2;ASN_AF=0.72;AVGPOST=0.9993;ERATE=0.0018;EUR_AF=0.39;LDAF=0.4224;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26027433 rs3752419 G A 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.72;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4238;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26031868 rs2213284 G A 100 PASS AA=N;AC=1;AF=0.79;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7907;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26033506 rs2230655 G A 100 PASS AA=g;AC=1;AF=0.79;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7916;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26045929 rs3752416 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.71;AMR_AF=0.68;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7222;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26056549 rs10425 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.90;AMR_AF=0.66;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.63;LDAF=0.7635;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26091179 rs1799945 C G 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.0841;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26091336 rs2071303 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.38;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4558;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26094367 rs1572982 G A 100 PASS AA=.;AC=1;AF=0.60;AFR_AF=0.66;AMR_AF=0.57;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.6010;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26104448 rs198852 A G 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.31;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.2390;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26107790 rs198845 G T 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.31;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.39;LDAF=0.2372;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26108282 rs198844 C G 100 PASS AA=.;AC=1;AF=0.40;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.3972;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26124430 rs198819 C T 100 PASS AA=.;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.3903;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26124634 rs4645 C T 100 PASS AA=.;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.22;LDAF=0.0972;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26285503 rs41266829 C T 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1106;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26285560 rs2393592 A G 100 PASS AA=.;AC=1;AF=0.62;AFR_AF=0.37;AMR_AF=0.64;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6220;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26285683 rs2393593 T C 100 PASS AA=.;AC=1;AF=0.77;AFR_AF=0.93;AMR_AF=0.74;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.7688;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26285759 rs41266831 A G 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1106;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26374549 rs11758089 T C 100 PASS AA=t;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1156;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26393021 rs1614887 G A 100 PASS AA=.;AC=1;AF=0.58;AFR_AF=0.90;AMR_AF=0.56;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5761;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 26444168 rs143665311 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2165;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.05 +6 26446011 rs138065289 G A 100 PASS AA=G;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0044;RSQ=0.9686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26466225 rs1977198 A C 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.11;AMR_AF=0.49;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0024;EUR_AF=0.50;LDAF=0.4605;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0118;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26501777 rs2255070 C G 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.57;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5448;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26501897 rs1321479 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.57;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.46;LDAF=0.5451;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26505135 rs3736780 C T 100 PASS AA=T;AC=1;AF=0.92;AFR_AF=0.93;AMR_AF=0.92;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9186;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26505362 rs3736781 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.57;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.5466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26505403 rs3736782 C A 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.57;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.5466;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26509330 rs9393728 C G 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.41;AMR_AF=0.55;AN=2;ASN_AF=0.69;AVGPOST=0.9825;ERATE=0.0098;EUR_AF=0.43;LDAF=0.5146;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 26545632 rs4871 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.57;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.5480;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 27216848 rs1234145 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9913;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 27420588 rs61736957 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.13;LDAF=0.0887;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 27425185 rs1883216 C A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.51;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.5896;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 27435707 rs2272814 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.52;AMR_AF=0.68;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6207;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 27792221 rs200499 C T 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=0.9962;ERATE=0.0006;EUR_AF=0.91;LDAF=0.9315;RSQ=0.9774;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 27792228 rs200498 T C 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=0.9977;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9338;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 28227436 rs12000 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.71;AMR_AF=0.37;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.4040;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 28228342 rs1679709 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.77;AMR_AF=0.88;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8519;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 29141632 rs143025597 T C 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.54;LDAF=0.3564;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.02,-0.00 +6 29141743 rs113110715 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.91;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9539;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 29141772 rs111303879 A G 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.80;AMR_AF=0.74;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.86;LDAF=0.7503;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 29141849 rs114578586 T C 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.12;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3983;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 29142054 rs115334439 C G 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.12;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3982;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.92,-0.00 +6 29142064 rs114170657 A G 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.54;LDAF=0.3569;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +6 29323259 rs115450889 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0018;EUR_AF=0.95;LDAF=0.9581;RSQ=0.9785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 29454651 rs141570832 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +6 29635410 rs148636218 T G 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0069;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29693011 rs146403415 C T 100 PASS AA=.;AC=1;AF=0.86;AFR_AF=0.83;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8582;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29797173 rs116722226 A G 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.59;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.45;LDAF=0.5515;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29797553 rs115774792 G C 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.46;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.5027;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29797639 rs114374571 C T 100 PASS AA=.;AC=1;AF=0.23;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2285;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29797696 rs115438745 A G 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.59;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.45;LDAF=0.5518;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29910286 rs114039523 C T 100 PASS AA=.;AC=1;AF=0.84;AFR_AF=0.77;AMR_AF=0.82;AN=2;ASN_AF=0.95;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8361;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29910742 rs78073371 G C 100 PASS AA=.;AC=1;AF=0.65;AFR_AF=0.59;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9877;ERATE=0.0015;EUR_AF=0.66;LDAF=0.6541;RSQ=0.9827;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29910759 rs115148713 T A 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=0.9681;ERATE=0.0030;EUR_AF=0.11;LDAF=0.1638;RSQ=0.9271;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29910761 . G A 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9827;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2896;RSQ=0.9722;SNPSOURCE=EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29910801 rs80246530 C A 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.14;AN=2;ASN_AF=0.31;AVGPOST=0.9792;ERATE=0.0044;EUR_AF=0.25;LDAF=0.2402;RSQ=0.9617;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29910820 rs113437653 G C 100 PASS AA=.;AC=1;AF=0.77;AFR_AF=0.64;AMR_AF=0.78;AN=2;ASN_AF=0.91;AVGPOST=0.9462;ERATE=0.0065;EUR_AF=0.75;LDAF=0.7647;RSQ=0.8980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29910834 rs111809723 G C 100 PASS AA=.;AC=1;AF=0.88;AFR_AF=0.86;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=0.9879;ERATE=0.0007;EUR_AF=0.82;LDAF=0.8735;RSQ=0.9639;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-3.70,-0.00,-5.00 +6 29912968 rs112254711 C G 100 PASS AA=.;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0421;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29913001 rs111333009 T C 100 PASS AA=.;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.18;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1883;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29913042 rs112763429 C T 100 PASS AA=.;AC=1;AF=0.90;AFR_AF=0.94;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.83;LDAF=0.9021;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29913067 rs113982959 T C 100 PASS AA=.;AC=1;AF=0.53;AFR_AF=0.61;AMR_AF=0.54;AN=2;ASN_AF=0.47;AVGPOST=0.9970;ERATE=0.0043;EUR_AF=0.51;LDAF=0.5244;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29913074 rs9260205 A G 100 PASS AA=.;AC=1;AF=0.84;AFR_AF=0.78;AMR_AF=0.82;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8409;RSQ=0.9990;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 29913078 rs111257184 A G 100 PASS AA=.;AC=1;AF=0.84;AFR_AF=0.78;AMR_AF=0.82;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8409;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30043171 rs144370663 G C 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9949;ERATE=0.0006;EUR_AF=0.05;LDAF=0.0527;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-0.37,-0.24,-5.00 +6 30530245 rs114696540 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.81;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7177;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30553871 rs115386392 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.81;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.71;LDAF=0.7157;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30571471 rs114836628 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.80;AMR_AF=0.50;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5918;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30573842 rs116538024 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1088;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30657015 rs114134204 T C 100 PASS AA=C;AC=1;AF=0.95;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9534;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30711805 rs114637387 C G 100 PASS AA=G;AC=1;AF=0.95;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9545;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30861000 rs116839962 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.35;LDAF=0.2432;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 30862423 rs115156025 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.26;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1563;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30864829 rs116629156 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.52;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.42;LDAF=0.5078;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 30883920 rs115543438 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.2431;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 30888161 rs114835309 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5773;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 30888169 rs115583245 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.21;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.35;LDAF=0.2438;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 30889120 rs114195195 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.2432;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 30953977 rs116032617 C T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1522;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 30954245 rs116749480 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.59;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7208;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +6 30954873 rs114494872 G A 100 PASS AA=g;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.05;AVGPOST=0.9954;ERATE=0.0011;EUR_AF=0.25;LDAF=0.1745;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.40,-0.00,-4.70 +6 30955209 rs141563971 T A 100 PASS AA=t;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=0.9835;ERATE=0.0085;EUR_AF=0.11;LDAF=0.1283;RSQ=0.9411;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31079236 rs1265055 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.56;AMR_AF=0.57;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5192;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31079440 rs139327231 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0405;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31079578 rs2233981 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0498;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31079643 rs1265054 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.56;AMR_AF=0.57;AN=2;ASN_AF=0.47;AVGPOST=0.9986;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5177;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31079889 rs1265053 C G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.56;AMR_AF=0.57;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5192;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31079894 rs2233977 A G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2098;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31080016 rs2233974 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1130;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31080099 rs2233973 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1440;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31083813 rs3130981 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.91;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8029;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31084048 rs3094216 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.23;AMR_AF=0.11;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1851;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31084075 rs3130982 G C 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.53;LDAF=0.6174;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31084163 rs3132554 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6184;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31084170 rs1042127 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1595;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +6 31084288 rs1042126 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6184;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31084639 rs4713436 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1595;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31084684 rs3094215 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6183;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31084792 rs3130983 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6184;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31084964 rs3130984 T C 100 PASS AA=t;AC=2;AF=0.80;AFR_AF=0.91;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8016;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31085200 rs3132553 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.91;AMR_AF=0.73;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8032;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +6 31085269 rs3132552 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.91;AMR_AF=0.73;AN=2;ASN_AF=0.87;AVGPOST=0.9966;ERATE=0.0025;EUR_AF=0.72;LDAF=0.8004;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.15,-0.03 +6 31088145 rs3095318 T A 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1180;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.42 +6 31088232 rs2302398 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.82;AMR_AF=0.71;AN=2;ASN_AF=0.78;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7569;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.66,-0.01 +6 31088241 rs2302397 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.82;AMR_AF=0.71;AN=2;ASN_AF=0.78;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.72;LDAF=0.7567;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +6 31112899 rs114711325 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.76;AMR_AF=0.83;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.78;LDAF=0.7559;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31237230 rs114633440 A G 100 PASS AA=.;AC=2;AF=0.72;AFR_AF=0.73;AMR_AF=0.77;AN=2;ASN_AF=0.74;AVGPOST=0.9773;ERATE=0.0017;EUR_AF=0.67;LDAF=0.7175;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31237233 rs116398929 A G 100 PASS AA=.;AC=2;AF=0.70;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.75;AVGPOST=0.9806;ERATE=0.0038;EUR_AF=0.66;LDAF=0.6983;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31237255 rs116009043 G A 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0001;EUR_AF=0.68;LDAF=0.7451;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31237323 rs114212090 A G 100 PASS AA=.;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.72;LDAF=0.7793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31237333 rs115399944 T A 100 PASS AA=.;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.80;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0001;EUR_AF=0.72;LDAF=0.7787;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31237767 rs115504869 T C 100 PASS AA=.;AC=2;AF=0.65;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.71;AVGPOST=0.9726;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6512;RSQ=0.9650;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 31237771 rs1050106 G A 100 PASS AA=.;AC=2;AF=0.60;AFR_AF=0.55;AMR_AF=0.69;AN=2;ASN_AF=0.67;AVGPOST=0.9852;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6047;RSQ=0.9823;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +6 31237773 . T C 100 PASS AA=.;AC=2;AF=0.60;AFR_AF=0.55;AMR_AF=0.69;AN=2;ASN_AF=0.67;AVGPOST=0.9851;ERATE=0.0004;EUR_AF=0.54;LDAF=0.6043;RSQ=0.9824;SNPSOURCE=EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +6 31237802 rs115272444 A G 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.80;AMR_AF=0.80;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7700;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31237862 rs116342335 T C 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9981;ERATE=0.0001;EUR_AF=0.12;LDAF=0.1124;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31238135 rs1050317 G A 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.79;AMR_AF=0.78;AN=2;ASN_AF=0.79;AVGPOST=0.9777;ERATE=0.0051;EUR_AF=0.70;LDAF=0.7519;RSQ=0.9628;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.63,-0.12 +6 31238147 rs144499408 C G 100 PASS AA=.;AC=2;AF=0.31;AFR_AF=0.32;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9761;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3077;RSQ=0.9624;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +6 31238259 rs115500469 G T 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.80;AMR_AF=0.80;AN=2;ASN_AF=0.80;AVGPOST=0.9972;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7743;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +6 31238297 rs114408626 C T 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.81;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7743;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.36,-0.02 +6 31238308 rs115055805 G C 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.81;AMR_AF=0.79;AN=2;ASN_AF=0.80;AVGPOST=0.9974;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7730;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.32,-0.02 +6 31238868 rs147959904 C T 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=0.9923;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1169;RSQ=0.9704;SNPSOURCE=LOWCOV,EXOME;THETA=0.0231;VT=SNP GT:DS:GL 0|1:1.000:-2.55,-0.11,-0.65 +6 31238930 rs116683968 A C 100 PASS AA=.;AC=1;AF=0.30;AFR_AF=0.26;AMR_AF=0.33;AN=2;ASN_AF=0.31;AVGPOST=0.9247;ERATE=0.0206;EUR_AF=0.31;LDAF=0.3144;RSQ=0.8330;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 0|1:1.250:-0.70,-0.27,-0.59 +6 31238942 rs116669411 G A 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.58;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.8194;ERATE=0.0299;EUR_AF=0.52;LDAF=0.5375;RSQ=0.7414;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 0|1:1.150:-0.89,-0.39,-0.33 +6 31238983 rs141994306 G C 100 PASS AA=.;AC=2;AF=0.48;AFR_AF=0.48;AMR_AF=0.55;AN=2;ASN_AF=0.49;AVGPOST=0.8864;ERATE=0.0157;EUR_AF=0.45;LDAF=0.4867;RSQ=0.8212;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|1:1.650:-5.00,-0.65,-0.11 +6 31238984 . G T 100 PASS AA=.;AC=2;AF=0.07;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9883;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0750;RSQ=0.9412;SNPSOURCE=EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:1.500:-5.00,-0.66,-0.11 +6 31239016 rs142790919 G A 100 PASS AA=.;AC=2;AF=0.10;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9898;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1059;RSQ=0.9610;SNPSOURCE=LOWCOV,EXOME;THETA=0.0210;VT=SNP GT:DS:GL 1|1:1.450:-0.48,-0.48,-0.48 +6 31322220 rs183895122 C T 100 PASS AA=N;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.14;AVGPOST=0.9836;ERATE=0.0076;EUR_AF=0.23;LDAF=0.1697;RSQ=0.9651;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31322229 rs3819301 A G 100 PASS AA=N;AC=1;AF=0.37;AFR_AF=0.37;AMR_AF=0.48;AN=2;ASN_AF=0.37;AVGPOST=0.9791;ERATE=0.0124;EUR_AF=0.32;LDAF=0.3680;RSQ=0.9700;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31322303 rs2308655 C G 100 PASS AA=N;AC=1;AF=0.57;AFR_AF=0.66;AMR_AF=0.65;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0001;EUR_AF=0.44;LDAF=0.5654;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31322395 rs17199328 A G 100 PASS AA=N;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.14;LDAF=0.0878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31322402 rs2442718 C T 100 PASS AA=N;AC=1;AF=0.22;AFR_AF=0.19;AMR_AF=0.21;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2153;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31322459 rs2507992 T C 100 PASS AA=N;AC=1;AF=0.22;AFR_AF=0.19;AMR_AF=0.21;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0001;EUR_AF=0.30;LDAF=0.2163;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31322470 rs2442717 C G 100 PASS AA=N;AC=2;AF=0.85;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.82;LDAF=0.8465;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31323233 rs709052 A G 100 PASS AA=N;AC=2;AF=0.42;AFR_AF=0.42;AMR_AF=0.48;AN=2;ASN_AF=0.37;AVGPOST=0.9933;ERATE=0.0143;EUR_AF=0.44;LDAF=0.4243;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31323296 rs142145421 A G 100 PASS AA=N;AC=2;AF=0.82;AFR_AF=0.87;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=0.9778;ERATE=0.0059;EUR_AF=0.81;LDAF=0.8178;RSQ=0.9528;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31323321 rs141003919 G A 100 PASS AA=N;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0001;EUR_AF=0.14;LDAF=0.0878;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31323353 rs2257269 G A 100 PASS AA=N;AC=2;AF=0.39;AFR_AF=0.37;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0001;EUR_AF=0.41;LDAF=0.3904;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31323409 rs2523605 T C 100 PASS AA=N;AC=2;AF=0.85;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0001;EUR_AF=0.82;LDAF=0.8464;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31324025 rs9266144 G A 100 PASS AA=N;AC=1;AF=0.21;AFR_AF=0.19;AMR_AF=0.15;AN=2;ASN_AF=0.25;AVGPOST=0.9350;ERATE=0.0185;EUR_AF=0.21;LDAF=0.2233;RSQ=0.8194;SNPSOURCE=LOWCOV,EXOME;THETA=0.0114;VT=SNP GT:DS:GL 1|0:1.000:-0.10,-0.68,-5.00 +6 31324245 rs145512068 A C 100 PASS AA=N;AC=2;AF=0.76;AFR_AF=0.82;AMR_AF=0.76;AN=2;ASN_AF=0.75;AVGPOST=0.8468;ERATE=0.0067;EUR_AF=0.74;LDAF=0.7331;RSQ=0.7055;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 1|1:1.900:-0.48,-0.48,-0.48 +6 31324516 rs1131215 C A 100 PASS AA=N;AC=2;AF=0.62;AFR_AF=0.63;AMR_AF=0.71;AN=2;ASN_AF=0.65;AVGPOST=0.9575;ERATE=0.0051;EUR_AF=0.56;LDAF=0.6201;RSQ=0.9502;SNPSOURCE=LOWCOV,EXOME;THETA=0.0108;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.38,-0.02 +6 31324531 rs139134873 C T 100 PASS AA=N;AC=2;AF=0.74;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=0.9697;ERATE=0.0008;EUR_AF=0.72;LDAF=0.7412;RSQ=0.9533;SNPSOURCE=LOWCOV,EXOME;THETA=0.0104;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.02,-0.00 +6 31324574 rs139096804 C T 100 PASS AA=N;AC=2;AF=0.03;AFR_AF=0.04;AMR_AF=0.07;AN=2;AVGPOST=0.9982;ERATE=0.0001;EUR_AF=0.03;LDAF=0.0314;RSQ=0.9811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +6 31324595 rs144857500 C G 100 PASS AA=N;AC=2;AF=0.41;AFR_AF=0.39;AMR_AF=0.48;AN=2;ASN_AF=0.47;AVGPOST=0.9632;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4130;RSQ=0.9517;SNPSOURCE=EXOME;THETA=0.0134;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.45,-0.02 +6 31324647 rs149969028 T C 100 PASS AA=N;AC=2;AF=0.03;AFR_AF=0.04;AMR_AF=0.06;AN=2;AVGPOST=0.9958;ERATE=0.0001;EUR_AF=0.04;LDAF=0.0344;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0147;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +6 31324742 rs147324178 T C 100 PASS AA=N;AC=2;AF=0.83;AFR_AF=0.75;AMR_AF=0.87;AN=2;ASN_AF=0.88;AVGPOST=0.9431;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8247;RSQ=0.8741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +6 31324953 rs9266207 C T 100 PASS AA=N;AC=2;AF=0.73;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9932;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7266;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|1:2.000:-3.47,-0.50,-0.17 +6 31474000 rs1051788 G A 100 PASS AA=N;AC=1;AF=0.28;AFR_AF=0.40;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2802;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31475127 rs3131638 A G 100 PASS AA=-;AC=2;AF=0.82;AFR_AF=0.83;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=0.9737;ERATE=0.0119;EUR_AF=0.76;LDAF=0.8101;RSQ=0.9410;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31506624 rs116828464 T C 100 PASS AA=c;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.83;LDAF=0.8716;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31506648 rs114558811 G T 100 PASS AA=g;AC=2;AF=0.78;AFR_AF=0.84;AMR_AF=0.82;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7797;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31508069 rs114760035 T G 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0183;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31513402 rs2239705 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1626;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31513864 rs2523502 A T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.82;LDAF=0.8706;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31583155 rs116284162 G A 100 PASS AA=g;AC=2;AF=0.42;AFR_AF=0.18;AMR_AF=0.48;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4218;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31607050 rs115961006 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.77;AMR_AF=0.89;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.85;LDAF=0.8401;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +6 31610686 rs116546065 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.32;AMR_AF=0.54;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4918;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +6 31631907 rs115181763 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.14;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0604;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31635710 rs114923349 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.42;AMR_AF=0.33;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3168;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31675501 rs114533005 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.30;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1436;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31687008 rs115777364 G A 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.50;AMR_AF=0.31;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3163;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31726688 rs707939 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.03;AMR_AF=0.38;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2953;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31729359 rs707938 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.66;AMR_AF=0.40;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0023;EUR_AF=0.33;LDAF=0.4223;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31729925 rs1802127 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.14;AMR_AF=0.07;AN=2;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.02;LDAF=0.0497;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31777946 rs2075800 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.03;AMR_AF=0.36;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2902;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31778272 rs2227956 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.97;AMR_AF=0.94;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.83;LDAF=0.8775;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31778529 rs2075799 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.23;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1427;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31783507 rs1043618 G C 100 PASS AA=g;AC=1;AF=0.44;AFR_AF=0.79;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4387;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31783755 rs1043620 T C 100 PASS AA=c;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9953;ERATE=0.0005;EUR_AF=0.88;LDAF=0.9439;RSQ=0.9674;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.52,-0.50,-0.16 +6 31783863 rs562047 G C 100 PASS AA=g;AC=1;AF=0.20;AFR_AF=0.47;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9886;ERATE=0.0008;EUR_AF=0.11;LDAF=0.2018;RSQ=0.9744;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.03,-0.47,-0.18 +6 31785228 rs140446899 G C 100 PASS AA=g;AC=2;AF=0.83;AFR_AF=0.93;AMR_AF=0.90;AN=2;ASN_AF=0.77;AVGPOST=0.9903;ERATE=0.0044;EUR_AF=0.79;LDAF=0.8347;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.26,-0.00 +6 31795949 rs140434649 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9980;RSQ=0.4732;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.60,-0.13 +6 31796057 rs144223778 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.17;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=0.9909;ERATE=0.0009;EUR_AF=0.05;LDAF=0.0819;RSQ=0.9533;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.98,-0.01,-1.77 +6 31797587 rs539689 C G 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.44;AMR_AF=0.67;AN=2;ASN_AF=0.63;AVGPOST=0.9958;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5641;RSQ=0.9930;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31839309 rs2242665 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6092;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31839331 rs2242664 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6093;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31842598 rs12661281 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1134;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31843924 rs2736428 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2852;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31868765 rs114508013 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9982;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0126;RSQ=0.9504;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31868843 rs148838488 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.0106;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.74 +6 31922254 rs115926079 A C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.93;AMR_AF=0.78;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.7943;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31929014 rs115002281 A C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.93;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.7802;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 31938107 rs116737778 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.32;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1819;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31938120 rs116035606 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0119;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 31939345 rs114386100 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.07;AMR_AF=0.03;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 31996966 rs2746414 G A 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9715;ERATE=0.0117;EUR_AF=0.09;LDAF=0.0857;RSQ=0.8811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +6 32006597 rs141984017 C T 100 PASS AA=c;AC=1;AF=0.72;AFR_AF=0.62;AMR_AF=0.81;AN=2;ASN_AF=0.72;AVGPOST=0.9677;ERATE=0.0091;EUR_AF=0.73;LDAF=0.7103;RSQ=0.9411;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-3.47 +6 32089142 rs116299635 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.08;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1051;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32190484 rs116074832 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.36;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=0.9987;ERATE=0.0060;EUR_AF=0.10;LDAF=0.1943;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0112;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32407709 rs115696912 C A 100 PASS AA=.;AC=1;AF=0.39;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3854;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32485492 rs111892599 C T 100 PASS AA=.;AC=1;AF=0.64;AFR_AF=0.52;AMR_AF=0.75;AN=2;ASN_AF=0.65;AVGPOST=0.9461;ERATE=0.0011;EUR_AF=0.65;LDAF=0.6295;RSQ=0.9454;SNPSOURCE=LOWCOV,EXOME;THETA=0.0168;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32485539 rs112839628 G C 100 PASS AA=.;AC=1;AF=0.70;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.66;AVGPOST=0.9634;ERATE=0.0017;EUR_AF=0.70;LDAF=0.6895;RSQ=0.9603;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:1.000:-0.63,-0.12,-5.00 +6 32486447 rs139672306 G A 100 PASS AA=.;AC=1;AF=0.64;AFR_AF=0.56;AMR_AF=0.74;AN=2;ASN_AF=0.63;AVGPOST=0.9345;ERATE=0.0005;EUR_AF=0.66;LDAF=0.6321;RSQ=0.9299;SNPSOURCE=LOWCOV,EXOME;THETA=0.0115;VT=SNP GT:DS:GL 0|1:0.750:-0.42,-0.20,-5.00 +6 32486456 rs113965088 A G 100 PASS AA=.;AC=1;AF=0.75;AFR_AF=0.64;AMR_AF=0.87;AN=2;ASN_AF=0.77;AVGPOST=0.9445;ERATE=0.0024;EUR_AF=0.75;LDAF=0.7335;RSQ=0.9317;SNPSOURCE=LOWCOV,EXOME;THETA=0.0181;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32486484 rs115773472 T G 100 PASS AA=.;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.24;AVGPOST=0.9296;ERATE=0.0022;EUR_AF=0.22;LDAF=0.2167;RSQ=0.8456;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +6 32486491 rs114548292 T C 100 PASS AA=.;AC=1;AF=0.72;AFR_AF=0.66;AMR_AF=0.81;AN=2;ASN_AF=0.69;AVGPOST=0.9594;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7082;RSQ=0.9522;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32489642 rs147192780 A C 100 PASS AA=.;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.36;AN=2;ASN_AF=0.27;AVGPOST=0.9552;ERATE=0.0007;EUR_AF=0.32;LDAF=0.2657;RSQ=0.9225;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-1.37,-0.02,-5.00 +6 32489650 rs115862317 A G 100 PASS AA=.;AC=1;AF=0.80;AFR_AF=0.80;AMR_AF=0.85;AN=2;ASN_AF=0.77;AVGPOST=0.9814;ERATE=0.0006;EUR_AF=0.81;LDAF=0.7994;RSQ=0.9681;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-2.30,-0.00,-5.00 +6 32489668 rs111875855 C T 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9745;ERATE=0.0005;EUR_AF=0.32;LDAF=0.2539;RSQ=0.9539;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:0.750:-0.08,-0.76,-5.00 +6 32551970 rs17886918 T G 100 PASS AA=.;AC=1;AF=0.51;AFR_AF=0.53;AMR_AF=0.53;AN=2;ASN_AF=0.47;AVGPOST=0.9501;ERATE=0.0200;EUR_AF=0.53;LDAF=0.5115;RSQ=0.8970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32552016 rs17880973 C A 100 PASS AA=.;AC=1;AF=0.21;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9801;ERATE=0.0008;EUR_AF=0.23;LDAF=0.2106;RSQ=0.9516;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|0:1.000:-1.55,-0.01,-5.00 +6 32552067 rs17882603 C T 100 PASS AA=.;AC=1;AF=0.45;AFR_AF=0.39;AMR_AF=0.50;AN=2;ASN_AF=0.43;AVGPOST=0.9795;ERATE=0.0047;EUR_AF=0.49;LDAF=0.4526;RSQ=0.9676;SNPSOURCE=EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32552072 rs17879995 T G 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9887;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1296;RSQ=0.9658;SNPSOURCE=EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32552172 rs9269961 C G 100 PASS AA=.;AC=1;AF=0.73;AFR_AF=0.70;AMR_AF=0.80;AN=2;ASN_AF=0.69;AVGPOST=0.9462;ERATE=0.0010;EUR_AF=0.76;LDAF=0.7225;RSQ=0.9401;SNPSOURCE=LOWCOV,EXOME;THETA=0.0152;VT=SNP GT:DS:GL 1|0:0.550:-0.65,-0.11,-5.00 +6 32605189 rs9272426 A G 100 PASS AA=.;AC=1;AF=0.42;AFR_AF=0.28;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9905;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4150;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32605207 rs3187964 C G 100 PASS AA=.;AC=1;AF=0.54;AFR_AF=0.42;AMR_AF=0.66;AN=2;ASN_AF=0.55;AVGPOST=0.9927;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5386;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32605257 rs1047989 C A 100 PASS AA=.;AC=1;AF=0.49;AFR_AF=0.37;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4931;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32605274 . T C 100 PASS AA=.;AC=1;AF=0.57;AFR_AF=0.48;AMR_AF=0.69;AN=2;ASN_AF=0.56;AVGPOST=0.9985;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5716;RSQ=0.9978;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32605295 rs9272433 C T 100 PASS AA=.;AC=1;AF=0.33;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3259;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32605336 rs9272435 G A 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9948;ERATE=0.0040;EUR_AF=0.30;LDAF=0.2886;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609042 rs28383439 C A 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.15;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2893;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609056 rs28383441 C T 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.16;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2904;RSQ=0.9991;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609094 rs12722043 C T 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.51;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.30;LDAF=0.3515;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609105 rs1129740 G A 100 PASS AA=.;AC=1;AF=0.53;AFR_AF=0.45;AMR_AF=0.65;AN=2;ASN_AF=0.52;AVGPOST=0.9957;ERATE=0.0012;EUR_AF=0.53;LDAF=0.5286;RSQ=0.9942;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609126 rs1071630 T C 100 PASS AA=.;AC=1;AF=0.57;AFR_AF=0.47;AMR_AF=0.68;AN=2;ASN_AF=0.56;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5654;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609130 rs1129753 C T 100 PASS AA=.;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1806;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609169 rs1048027 T C 100 PASS AA=.;AC=1;AF=0.31;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9957;ERATE=0.0002;EUR_AF=0.30;LDAF=0.3119;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609173 rs10093 C G 100 PASS AA=.;AC=1;AF=0.40;AFR_AF=0.28;AMR_AF=0.44;AN=2;ASN_AF=0.41;AVGPOST=0.9921;ERATE=0.0012;EUR_AF=0.44;LDAF=0.3978;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609181 rs1129765 C T 100 PASS AA=.;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.29;AVGPOST=0.9946;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2304;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32609207 rs1142324 C T 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.39;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=0.9872;ERATE=0.0043;EUR_AF=0.46;LDAF=0.4777;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|0:0.950:-0.58,-0.13,-5.00 +6 32627976 rs1063345 G A 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.45;AMR_AF=0.68;AN=2;ASN_AF=0.53;AVGPOST=0.9918;ERATE=0.0007;EUR_AF=0.55;LDAF=0.5460;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0122;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +6 32627992 rs1063343 T C 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.47;AMR_AF=0.69;AN=2;ASN_AF=0.55;AVGPOST=0.9941;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5606;RSQ=0.9932;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32628022 rs1140347 A G 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.46;AMR_AF=0.67;AN=2;ASN_AF=0.55;AVGPOST=0.9927;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5510;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0117;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32628030 rs9273471 G A 100 PASS AA=.;AC=1;AF=0.36;AFR_AF=0.24;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=0.9891;ERATE=0.0014;EUR_AF=0.37;LDAF=0.3571;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0071;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32629755 rs1130399 G A 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9976;ERATE=0.0014;EUR_AF=0.24;LDAF=0.2677;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32629764 rs1130398 C T 100 PASS AA=.;AC=1;AF=0.43;AFR_AF=0.31;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.40;LDAF=0.4261;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32629802 rs75643968 A G 100 PASS AA=.;AC=1;AF=0.61;AFR_AF=0.45;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=0.9975;ERATE=0.0040;EUR_AF=0.59;LDAF=0.6115;RSQ=0.9963;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32629847 rs1049133 A G 100 PASS AA=.;AC=1;AF=0.80;AFR_AF=0.70;AMR_AF=0.87;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.78;LDAF=0.7984;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32629859 rs1049130 A G 100 PASS AA=.;AC=1;AF=0.65;AFR_AF=0.52;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6494;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32629889 rs1049087 G A 100 PASS AA=.;AC=1;AF=0.44;AFR_AF=0.29;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9984;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4404;RSQ=0.9979;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32629891 . C T 100 PASS AA=.;AC=1;AF=0.42;AFR_AF=0.31;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9978;ERATE=0.0002;EUR_AF=0.40;LDAF=0.4242;RSQ=0.9968;SNPSOURCE=EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32632650 rs1130386 C T 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.41;AMR_AF=0.60;AN=2;ASN_AF=0.73;AVGPOST=0.9736;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5585;RSQ=0.9705;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32632714 rs3210148 G C 100 PASS AA=.;AC=1;AF=0.80;AFR_AF=0.70;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9895;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8040;RSQ=0.9821;SNPSOURCE=EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32632717 rs1049073 G A 100 PASS AA=.;AC=1;AF=0.34;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.55;AVGPOST=0.9751;ERATE=0.0017;EUR_AF=0.30;LDAF=0.3403;RSQ=0.9677;SNPSOURCE=EXOME;THETA=0.0103;VT=SNP GT:DS:GL 1|0:1.000:-3.74,-0.00,-5.00 +6 32632744 rs1049082 C T 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.23;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9867;ERATE=0.0002;EUR_AF=0.34;LDAF=0.3462;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32632832 rs9274407 A T 100 PASS AA=.;AC=1;AF=0.75;AFR_AF=0.70;AMR_AF=0.82;AN=2;ASN_AF=0.68;AVGPOST=0.9912;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7524;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634300 rs1130366 G C 100 PASS AA=.;AC=1;AF=0.53;AFR_AF=0.37;AMR_AF=0.64;AN=2;ASN_AF=0.66;AVGPOST=0.9791;ERATE=0.0008;EUR_AF=0.49;LDAF=0.5332;RSQ=0.9759;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634302 . A G 100 PASS AA=.;AC=1;AF=0.67;AFR_AF=0.52;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9739;ERATE=0.0009;EUR_AF=0.65;LDAF=0.6706;RSQ=0.9659;SNPSOURCE=EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634306 . A T 100 PASS AA=.;AC=1;AF=0.57;AFR_AF=0.42;AMR_AF=0.67;AN=2;ASN_AF=0.69;AVGPOST=0.9847;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5726;RSQ=0.9826;SNPSOURCE=EXOME;THETA=0.0112;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634331 rs1049058 G C 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9739;ERATE=0.0005;EUR_AF=0.47;LDAF=0.4979;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634350 rs1049057 T C 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.39;AMR_AF=0.65;AN=2;ASN_AF=0.70;AVGPOST=0.9809;ERATE=0.0064;EUR_AF=0.53;LDAF=0.5591;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634355 rs1049072 G A 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.35;AN=2;ASN_AF=0.35;AVGPOST=0.9874;ERATE=0.0005;EUR_AF=0.26;LDAF=0.2708;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634387 rs1049055 C T 100 PASS AA=.;AC=1;AF=0.79;AFR_AF=0.68;AMR_AF=0.86;AN=2;ASN_AF=0.86;AVGPOST=0.9946;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7872;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634405 rs1049053 C T 100 PASS AA=.;AC=1;AF=0.77;AFR_AF=0.64;AMR_AF=0.84;AN=2;ASN_AF=0.86;AVGPOST=0.9941;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7661;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32634425 rs1049070 C T 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.33;AVGPOST=0.9971;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2515;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 32709204 rs116624258 G C 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.29;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1645;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32709309 rs114506080 A G 100 PASS AA=.;AC=1;AF=0.80;AFR_AF=0.78;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=0.9884;ERATE=0.0081;EUR_AF=0.75;LDAF=0.7929;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32805307 rs2071466 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2281;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32805470 rs2071465 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.37;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.44;LDAF=0.3610;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32810443 rs9276810 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.33;AMR_AF=0.43;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.46;LDAF=0.4058;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32904981 rs116126874 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.84;AMR_AF=0.71;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.79;LDAF=0.7595;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32917042 rs114253801 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0480;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 32942302 rs114751618 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.82;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6112;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33053609 rs114572290 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1362;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33053682 rs115930026 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.59;AMR_AF=0.30;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.4388;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33053968 rs114926188 T A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.59;AMR_AF=0.30;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.31;LDAF=0.4353;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33053971 rs9277491 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.59;AMR_AF=0.30;AN=2;ASN_AF=0.56;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.31;LDAF=0.4351;RSQ=0.9985;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33053982 rs116449581 G C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.60;AMR_AF=0.30;AN=2;ASN_AF=0.57;AVGPOST=0.9985;ERATE=0.0016;EUR_AF=0.31;LDAF=0.4394;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33054046 rs9277493 T G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.59;AMR_AF=0.30;AN=2;ASN_AF=0.57;AVGPOST=0.9987;ERATE=0.0011;EUR_AF=0.30;LDAF=0.4364;RSQ=0.9984;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33054057 rs116603005 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.59;AMR_AF=0.30;AN=2;ASN_AF=0.57;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.30;LDAF=0.4343;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33134392 rs2855453 C A 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.56;AMR_AF=0.74;AN=2;ASN_AF=0.96;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7325;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33136575 rs2855448 C T 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.53;AMR_AF=0.70;AN=2;ASN_AF=0.90;AVGPOST=0.9805;ERATE=0.0222;EUR_AF=0.59;LDAF=0.6729;RSQ=0.9661;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.44 +6 33138955 rs2855437 G A 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.83;AMR_AF=0.74;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7847;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33141253 rs9277932 T G 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.62;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=0.55;LDAF=0.6476;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33147589 rs3129201 T G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33152865 rs116165521 G A 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1340;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +6 33169392 rs146225058 G C 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0257;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33248174 rs114723636 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.69;AMR_AF=0.49;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6174;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.98,-0.00,-3.52 +6 33255103 rs116237407 A C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.77;AMR_AF=0.61;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5526;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33256096 rs115412679 A T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.77;AMR_AF=0.61;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5521;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33256471 rs116810514 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9443;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33256984 rs114553834 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.77;AMR_AF=0.61;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5521;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33258443 rs115146844 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.58;AMR_AF=0.59;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4996;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33261871 rs116718592 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.39;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2553;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33272855 rs2071888 G C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.77;AMR_AF=0.61;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5567;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33281842 rs75399572 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9937;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2108;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33281843 rs2239840 A T 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9933;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2104;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33283766 rs3130100 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.62;AMR_AF=0.60;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5218;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33288017 rs139733540 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +6 33288271 rs114250845 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.38;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2404;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33359716 rs116749831 G C 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.40;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3113;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33359820 rs115791715 A C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.83;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9031;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33377484 rs115587807 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.10;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=0.9946;ERATE=0.0603;EUR_AF=0.32;LDAF=0.2286;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33382241 rs115188083 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.07;AMR_AF=0.40;AN=2;ASN_AF=0.30;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.40;LDAF=0.2981;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33382288 rs114055674 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.90;LDAF=0.9607;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33382943 rs3106196 G T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.90;LDAF=0.9607;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33403422 rs453590 C T 100 PASS AA=c;AC=1;AF=0.42;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4159;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33408542 rs411136 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4140;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.85 +6 33422976 rs3119025 T G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9551;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33541719 rs513349 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.72;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5824;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33589332 rs55774724 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.13;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0635;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.800:-2.57,-0.00,-3.66 +6 33608379 rs4713647 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9714;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33627367 rs41271249 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.14;AVGPOST=0.9981;ERATE=0.0007;EUR_AF=0.05;LDAF=0.0695;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33631696 rs2296337 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.25;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2541;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33632922 rs138821995 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0021;RSQ=0.9029;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +6 33636907 rs2077163 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.40;AMR_AF=0.45;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4617;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33638180 rs2229634 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.17;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2930;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33639760 rs3736893 G C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.75;AMR_AF=0.72;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.65;LDAF=0.7276;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33641379 rs1803831 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.31;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4462;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33641956 rs7769838 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.78;AMR_AF=0.78;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8034;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33644768 rs2068236 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9988;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9399;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 33644773 rs4713652 T A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.75;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9338;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33646328 rs2274195 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.54;AMR_AF=0.78;AN=2;ASN_AF=0.93;AVGPOST=0.9961;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7624;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +6 33647651 rs4713654 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.44;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.70;LDAF=0.6925;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +6 33648228 rs2229638 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.82;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=0.9966;ERATE=0.0040;EUR_AF=0.92;LDAF=0.9162;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33653111 rs942637 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.82;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9199;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33653448 rs749338 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.11;AMR_AF=0.57;AN=2;ASN_AF=0.84;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5025;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33654897 rs942642 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.52;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.70;LDAF=0.7351;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33656250 rs2296736 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.14;AMR_AF=0.60;AN=2;ASN_AF=0.88;AVGPOST=0.9963;ERATE=0.0030;EUR_AF=0.49;LDAF=0.5333;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.93,-0.01,-1.66 +6 33656969 rs2296739 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.11;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5003;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33659472 rs2229642 C G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5580;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33659536 rs2296740 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5644;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33659557 rs2296741 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.13;AMR_AF=0.59;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5289;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33660695 rs3818524 G C 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.12;AMR_AF=0.56;AN=2;ASN_AF=0.80;AVGPOST=0.9932;ERATE=0.0043;EUR_AF=0.47;LDAF=0.4935;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33690796 rs4713668 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.08;AMR_AF=0.49;AN=2;ASN_AF=0.71;AVGPOST=0.9931;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4131;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33690797 rs4711341 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.08;AMR_AF=0.50;AN=2;ASN_AF=0.73;AVGPOST=0.9941;ERATE=0.0014;EUR_AF=0.37;LDAF=0.4225;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33703230 rs545787 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.74;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=0.9978;ERATE=0.0026;EUR_AF=0.32;LDAF=0.3403;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33740382 rs2296744 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4882;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33740592 rs4711349 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.24;AMR_AF=0.44;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5206;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33744711 rs2296746 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.22;AMR_AF=0.33;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4274;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33744882 rs2296747 C G 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.25;AMR_AF=0.34;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4351;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33748831 rs2182658 T G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.66;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8112;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 33754592 rs4711351 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.36;LDAF=0.3990;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33762625 rs11758463 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2153;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 33768897 rs2281820 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.52;AMR_AF=0.51;AN=2;ASN_AF=0.83;AVGPOST=0.9979;ERATE=0.0024;EUR_AF=0.54;LDAF=0.6080;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 33995871 rs7745888 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.39;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1271;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34003685 rs2228623 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1873;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 34008006 rs2229900 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.74;AMR_AF=0.48;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.20;LDAF=0.4358;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34026938 rs2451359 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9637;RSQ=0.9792;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 34214322 rs1150781 C G 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.51;AMR_AF=0.67;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7683;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 34214348 rs34410712 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0475;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34495078 rs2282252 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.14;AMR_AF=0.06;AN=2;ASN_AF=0.10;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0741;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34507004 rs2233647 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.07;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0796;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34512064 rs2233639 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.07;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34512195 rs2233637 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.07;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0854;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34512265 rs2233635 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.19;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0512;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-1.83,-0.01,-5.00 +6 34664207 rs3800456 T G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.72;AMR_AF=0.81;AN=2;ASN_AF=0.69;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.80;LDAF=0.7532;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-3.74 +6 34738203 rs2038841 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.73;AMR_AF=0.32;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.33;LDAF=0.4508;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34791027 rs7774697 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.73;AMR_AF=0.32;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.33;LDAF=0.4554;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34803947 rs4259246 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.76;AMR_AF=0.32;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4608;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34824636 rs11755393 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.76;AMR_AF=0.32;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4679;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34825662 rs16894959 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.31;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1346;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34827085 rs9469913 A T 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.48;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1829;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34831866 rs3734264 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.76;AMR_AF=0.32;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.33;LDAF=0.4622;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34937738 rs150286932 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 34949451 rs3817473 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.06;AMR_AF=0.64;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.4520;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 34949607 rs2293242 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.33;AMR_AF=0.73;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.5845;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 34962060 rs3823438 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.04;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.57;LDAF=0.3622;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 35027927 rs820085 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 35047579 rs2762338 G C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.18;AMR_AF=0.48;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.3725;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +6 35047732 rs2689094 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.47;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.3286;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.55,-0.14,-5.00 +6 35050506 rs2177382 G A 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.81;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=0.9993;ERATE=0.0046;EUR_AF=0.85;LDAF=0.8500;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35051328 rs199741559 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35104018 rs12661389 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.47;AN=2;ASN_AF=0.27;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3273;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 35216296 rs2071920 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.30;AMR_AF=0.74;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6481;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 35253974 rs2228265 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.32;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0856;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35254207 rs743965 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.31;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0850;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35258539 rs763157 C A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9145;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35260503 rs1557567 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.26;AMR_AF=0.74;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6380;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 35260530 rs1557568 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.26;AMR_AF=0.74;AN=2;ASN_AF=0.66;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6382;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 35265711 rs16874262 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.22;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0544;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +6 35285720 rs2395617 A C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.84;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9012;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35391787 rs2076167 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.42;AMR_AF=0.78;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.80;LDAF=0.6920;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35423489 rs7757405 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7578;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35423662 rs4713867 A C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7591;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35425416 rs13214239 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.07;AMR_AF=0.60;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4132;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35448189 rs760782 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.87;AMR_AF=0.83;AN=2;ASN_AF=0.64;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.69;LDAF=0.7406;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +6 35452346 rs11756089 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.31;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1189;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35477025 rs2064318 C G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.91;AMR_AF=0.90;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8537;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35478612 rs2273001 G A 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.51;AMR_AF=0.68;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6700;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35478626 rs185636479 C G 100 PASS AA=C;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0041;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35479574 rs7764472 G C 100 PASS AA=C;AC=1;AF=0.89;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=0.9954;ERATE=0.0006;EUR_AF=0.83;LDAF=0.8854;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.050:-3.66,-0.11,-0.64 +6 35705892 rs2817041 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.83;AMR_AF=0.86;AN=2;ASN_AF=0.58;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7579;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35715303 rs2252881 G C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.88;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5466;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35747107 rs9470092 C G 100 PASS AA=C;AC=2;AF=0.05;AFR_AF=0.05;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0484;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +6 35773490 rs149941106 C T 100 PASS AA=C;AC=1;AF=0.0032;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 35803283 rs2859420 C T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.68;AMR_AF=0.42;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4108;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35923246 rs2295852 T C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.65;AMR_AF=0.29;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3821;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35960390 rs17707331 C T 100 PASS AA=C;AC=2;AF=0.10;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9977;ERATE=0.0030;EUR_AF=0.14;LDAF=0.1018;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35967772 rs17713154 T C 100 PASS AA=T;AC=2;AF=0.11;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1079;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 35980121 rs743923 C T 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.42;AMR_AF=0.26;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.24;LDAF=0.2538;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 36041431 rs851010 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.55;LDAF=0.3656;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36075219 rs9470219 A C 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.18;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3701;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36098333 rs12191295 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.98;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9959;ERATE=0.0006;EUR_AF=0.94;LDAF=0.9692;RSQ=0.9456;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +6 36098410 rs1059227 A C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.79;AMR_AF=0.73;AN=2;ASN_AF=0.95;AVGPOST=0.9923;ERATE=0.0006;EUR_AF=0.65;LDAF=0.7732;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +6 36260858 rs2239795 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.56;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0016;EUR_AF=0.42;LDAF=0.4144;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 36263171 rs45524833 G A 100 PASS AA=G;AC=1;AF=0.0032;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.0026;LDAF=0.0032;RSQ=0.9731;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36274148 rs45621032 T A 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0119;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 36274153 rs12197079 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.30;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2144;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 36275458 rs4713956 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.73;AMR_AF=0.67;AN=2;ASN_AF=0.56;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6377;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 36446975 rs2239808 G C 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.49;AMR_AF=0.19;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3176;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 36467791 rs659726 C G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.72;AMR_AF=0.49;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.5086;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 36492269 rs3752479 C G 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.50;AMR_AF=0.19;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3190;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 36493330 rs6927896 C T 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.52;AMR_AF=0.19;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3199;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +6 36652339 rs3176352 C G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.75;AMR_AF=0.42;AN=2;ASN_AF=0.59;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4735;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36712962 rs743870 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.40;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.47;LDAF=0.4128;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36713263 rs763046 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.87;AMR_AF=0.66;AN=2;ASN_AF=0.84;AVGPOST=0.9968;ERATE=0.0054;EUR_AF=0.84;LDAF=0.8165;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-3.01,-0.00 +6 36733132 rs763048 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.39;AMR_AF=0.62;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0039;EUR_AF=0.63;LDAF=0.5789;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36759768 rs9349011 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.05;AMR_AF=0.36;AN=2;ASN_AF=0.42;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3025;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36766292 rs6940728 C T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=0.9977;ERATE=0.0101;EUR_AF=0.61;LDAF=0.6626;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 36882353 rs2272275 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.30;AMR_AF=0.28;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2761;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 36887308 rs2272276 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.30;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2733;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 36922684 rs1405069 A C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.78;AMR_AF=0.54;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5659;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 36930687 rs17624006 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0754;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36930814 rs41272198 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0768;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36931162 rs2296934 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.66;AMR_AF=0.70;AN=2;ASN_AF=0.54;AVGPOST=0.9969;ERATE=0.0008;EUR_AF=0.62;LDAF=0.6201;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 36936771 rs7772210 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2313;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36943513 rs2293385 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.25;AMR_AF=0.32;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36945393 rs76406709 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.26;AMR_AF=0.11;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1138;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36945938 rs61748598 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.26;AMR_AF=0.11;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1138;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 36978834 rs1753288 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.45;AMR_AF=0.43;AN=2;ASN_AF=0.56;AVGPOST=0.9981;ERATE=0.0045;EUR_AF=0.37;LDAF=0.4469;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 37250112 rs195753 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9205;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 37252210 rs3818136 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6801;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 37280844 rs149708 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.87;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9017;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 37447075 rs2797790 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.89;AMR_AF=0.69;AN=2;ASN_AF=0.47;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6681;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 37450914 rs10692 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.89;AMR_AF=0.71;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6828;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 37606304 rs3778013 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.39;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1708;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 37620129 rs2273109 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.46;AMR_AF=0.71;AN=2;ASN_AF=0.82;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6798;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 37623566 rs3846874 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.33;AMR_AF=0.65;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6315;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 38650628 rs4746 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.33;AMR_AF=0.37;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3026;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 38670837 rs1049346 G A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.69;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5532;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 38718402 rs56148146 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.1225;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 38771096 rs12192604 T C 100 PASS AA=T;AC=2;AF=0.09;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.20;LDAF=0.0935;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 38885211 rs139798043 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 38899643 rs75954496 T A 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0158;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 38979946 rs9296273 T A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.62;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8067;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 38980081 rs10484847 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1115;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 39033602 rs6918287 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9945;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +6 39034095 rs10305457 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.18;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0663;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 39040654 rs2235868 A C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4525;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 39041502 rs1042044 A C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.63;AMR_AF=0.60;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5704;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 39048491 rs1126476 A C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0015;EUR_AF=0.51;LDAF=0.4906;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 40360465 rs3734557 A G 100 PASS AA=g;AC=1;AF=0.56;AFR_AF=0.67;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5613;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 40399446 rs7775772 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.73;AMR_AF=0.63;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6554;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 41196156 rs2803496 C T 100 PASS AA=.;AC=2;AF=0.90;AFR_AF=0.79;AMR_AF=0.94;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9035;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +6 41196605 rs9369265 T C 100 PASS AA=.;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7191;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 41196727 rs2101269 C T 100 PASS AA=.;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0012;EUR_AF=0.77;LDAF=0.7205;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 41197785 rs9296357 T C 100 PASS AA=.;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7203;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 41197857 rs7769759 C T 100 PASS AA=.;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7198;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 41204329 rs9349186 A T 100 PASS AA=.;AC=2;AF=0.35;AFR_AF=0.37;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3529;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 41303592 rs9394782 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.43;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6782;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41309552 rs2236369 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.24;AMR_AF=0.66;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5073;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41309698 rs2236370 G C 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.36;AMR_AF=0.71;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5575;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41318438 rs2273962 A G 100 PASS AA=N;AC=1;AF=0.73;AFR_AF=0.47;AMR_AF=0.85;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7313;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41533579 rs2104506 C A 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.48;AMR_AF=0.37;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3688;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 41621271 rs2230088 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0735;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41652604 rs1062966 T C 100 PASS AA=t;AC=1;AF=0.74;AFR_AF=0.88;AMR_AF=0.65;AN=2;ASN_AF=0.73;AVGPOST=0.9971;ERATE=0.0008;EUR_AF=0.70;LDAF=0.7404;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41658566 rs2273068 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1189;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41658889 rs1015149 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.57;AMR_AF=0.44;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4634;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41704772 rs73733015 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1988;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41705612 rs3804279 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.35;AMR_AF=0.24;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2309;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41708374 rs4714509 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.22;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1775;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 41773576 rs2185798 G C 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.50;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5381;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 41905174 rs2479717 T A 100 PASS AA=N;AC=1;AF=0.84;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8376;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42036395 rs2492926 A C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.79;AMR_AF=0.77;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7646;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 42044945 rs3800286 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.47;AMR_AF=0.73;AN=2;ASN_AF=0.89;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7035;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 42162388 rs3749921 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.22;AMR_AF=0.67;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6042;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42162575 rs1474867 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8835;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +6 42176120 rs2295278 G T 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.22;AMR_AF=0.67;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5951;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42181960 rs1884318 A C 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.22;AMR_AF=0.67;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.63;LDAF=0.5951;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42185564 rs9471809 A C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.67;AMR_AF=0.21;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2863;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 42210951 rs2295276 C G 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.56;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2464;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 42214291 rs117301162 A C 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0087;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42224546 rs2295275 A T 100 PASS AA=A;AC=1;AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0613;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 42532102 rs3749897 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4548;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42600319 rs5014584 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9415;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.10,-0.00 +6 42612312 rs7767888 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.94;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9273;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 42627434 rs6917033 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.42;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4351;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42644623 rs2038261 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.42;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.41;LDAF=0.4351;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42650772 rs6906859 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.27;AMR_AF=0.18;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0021;EUR_AF=0.09;LDAF=0.1564;RSQ=0.9986;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42658949 rs10058 T A 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.13;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1502;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42666061 rs434102 T C 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7810;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 42666145 rs425876 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9434;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 42666164 rs390659 G C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7802;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 42689755 rs7764439 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.65;AMR_AF=0.57;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5754;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 42713618 rs2234026 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9929;RSQ=0.9682;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 42832715 rs140628632 G A 100 PASS AA=G;AC=1;AF=0.0037;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 42853842 rs2179719 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.99;LDAF=0.9977;RSQ=0.9626;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 42928461 rs10948059 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.49;AMR_AF=0.37;AN=2;ASN_AF=0.14;AVGPOST=0.9980;ERATE=0.0006;EUR_AF=0.48;LDAF=0.3754;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.63,-0.12 +6 42928758 rs2296805 T G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.96;AMR_AF=0.59;AN=2;ASN_AF=0.33;AVGPOST=0.9962;ERATE=0.0005;EUR_AF=0.60;LDAF=0.6048;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.96 +6 42931224 rs4987173 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.39;AMR_AF=0.36;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3397;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42931261 rs2296804 C G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.96;AMR_AF=0.59;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6072;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42932200 rs1129187 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.34;AMR_AF=0.36;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3303;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42932202 rs1129186 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.76;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4833;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42932715 rs2274517 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.79;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4905;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42934500 rs2274514 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.76;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4832;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42934620 rs3818554 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.76;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4832;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42935998 rs9471982 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.77;AMR_AF=0.43;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4848;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42942779 rs9986447 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.21;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.2984;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 42946490 rs9462858 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.34;AMR_AF=0.36;AN=2;ASN_AF=0.12;AVGPOST=0.9911;ERATE=0.0014;EUR_AF=0.46;LDAF=0.3270;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.86,-0.26,-0.35 +6 42980849 rs117965109 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0310;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 43014298 rs9394939 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.77;AMR_AF=0.85;AN=2;ASN_AF=0.86;AVGPOST=0.9831;ERATE=0.0282;EUR_AF=0.79;LDAF=0.8127;RSQ=0.9695;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43014299 rs9381231 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.73;AMR_AF=0.83;AN=2;ASN_AF=0.84;AVGPOST=0.9900;ERATE=0.0540;EUR_AF=0.75;LDAF=0.7840;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43109751 rs6905948 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.46;AMR_AF=0.43;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3410;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.83,-0.00 +6 43112382 rs7759437 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.60;AMR_AF=0.45;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3789;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 43128434 rs61021888 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.39;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2491;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 43152062 rs200369406 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +6 43152573 rs9472022 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.63;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3249;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 43154091 rs941849 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43184132 rs2273709 A C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.72;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3701;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 43221264 rs12664472 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.34;AMR_AF=0.19;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2798;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 43230970 rs3800294 G C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.40;AMR_AF=0.29;AN=2;ASN_AF=0.36;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3435;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 43269029 rs1574430 A C 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.02;AMR_AF=0.50;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4608;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43270097 rs2651184 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43273604 rs2242416 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.06;AMR_AF=0.43;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.58;LDAF=0.4583;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43306346 rs1459675 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43399837 rs700008 A G 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.86;AMR_AF=0.82;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8762;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 43401105 rs9394952 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.03;AMR_AF=0.43;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3968;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43414216 rs1214746 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9466;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 43414234 rs1214747 G C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.59;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.77;LDAF=0.6868;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 43492578 rs2257082 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.18;AMR_AF=0.29;AN=2;ASN_AF=0.61;AVGPOST=0.9950;ERATE=0.0007;EUR_AF=0.29;LDAF=0.3502;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 43496662 rs1106841 A C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.62;AMR_AF=0.44;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3628;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 43536401 rs4714687 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.0020;AMR_AF=0.11;AN=2;ASN_AF=0.54;AVGPOST=0.9926;ERATE=0.0005;EUR_AF=0.02;LDAF=0.1662;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 43538208 rs35642078 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.62;AVGPOST=0.9964;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3411;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44081718 rs6883 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.82;AMR_AF=0.68;AN=2;ASN_AF=0.78;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.49;LDAF=0.6709;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 44081987 rs4711767 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.85;AMR_AF=0.68;AN=2;ASN_AF=0.81;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.49;LDAF=0.6884;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 44107189 rs35174285 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1368;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44108848 rs12528844 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1367;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44120293 rs79582609 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1380;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44121947 rs2277127 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.16;AMR_AF=0.14;AN=2;ASN_AF=0.26;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1442;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44140818 rs3813500 C G 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.02;AMR_AF=0.35;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2955;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44145063 rs16871612 T C 100 PASS AA=T;AC=1;AF=0.10;AMR_AF=0.03;AN=2;ASN_AF=0.34;AVGPOST=0.9952;ERATE=0.0008;EUR_AF=0.01;LDAF=0.1005;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44147337 rs56277421 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.20;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2326;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44148568 rs58040611 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0832;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 44151490 rs7761137 G A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.56;AMR_AF=0.24;AN=2;ASN_AF=0.0035;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2432;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 44219710 rs2070695 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1955;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44222718 rs3734707 G C 100 PASS AA=g;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0110;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44232920 rs2233434 A G 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.02;AN=2;ASN_AF=0.16;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0739;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.38 +6 44232977 rs2233433 G A 100 PASS AA=G;AC=1;AF=0.06;AMR_AF=0.02;AN=2;ASN_AF=0.16;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0624;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.93,-0.05 +6 44247951 rs484757 T G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.67;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9045;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 44250165 rs516582 A G 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.47;AMR_AF=0.81;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6745;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44253749 rs324143 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.67;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.96;LDAF=0.8972;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 44253765 rs2297336 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1938;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 44255387 rs61742784 C T 100 PASS AA=C;AC=1;AF=0.07;AMR_AF=0.03;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0663;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44255459 rs324146 G A 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.48;AMR_AF=0.81;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6755;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44268371 rs325008 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.60;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8888;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 44269023 rs325007 T C 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.60;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8880;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 44272284 rs74950428 G C 100 PASS AA=G;AC=1;AF=0.07;AMR_AF=0.03;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0663;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44274797 rs7740535 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9117;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 44275011 rs324136 T C 100 PASS AA=t;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9109;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 44279111 rs9688508 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2642;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44279309 rs41282672 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2642;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 44982593 rs12528232 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.23;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1640;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 45922849 rs3734206 C T 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.75;AMR_AF=0.74;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7295;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46107752 rs7451713 C G 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.22;AMR_AF=0.49;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4250;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46129345 rs2235881 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.19;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4182;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46135489 rs6926570 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.19;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4164;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46135984 rs3806995 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.19;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4163;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46521602 rs699939 C A 100 PASS AA=a;AC=2;AF=0.38;AFR_AF=0.74;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.25;LDAF=0.3802;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46563779 rs147961800 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.0026;LDAF=0.0015;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46563817 rs7761731 A T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.76;AMR_AF=0.37;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4181;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 46620135 rs9369628 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.16;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 46620252 rs12192544 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1385;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46623698 rs3757241 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.76;LDAF=0.8610;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46657057 rs3799277 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8647;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46658892 rs9381471 A T 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.14;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0457;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 46658905 rs9381472 C G 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3596;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46659187 rs149251330 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 46672943 rs1051931 A G 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7930;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46684222 rs1805017 C T 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.23;AMR_AF=0.35;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2527;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46793175 rs6920863 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.45;AMR_AF=0.40;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3458;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46794048 rs2297018 C G 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.45;AMR_AF=0.40;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3460;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46797329 rs2274657 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2377;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46802370 rs4714952 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.90;AMR_AF=0.70;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6636;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.71,-0.00 +6 46803018 rs2297020 A T 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.48;AMR_AF=0.29;AN=2;ASN_AF=0.29;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3260;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-2.63,-0.00,-5.00 +6 46803102 rs2297019 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.53;AMR_AF=0.30;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3364;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +6 46806809 rs1804211 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.36;LDAF=0.2403;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46823695 rs657340 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8638;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 46826508 rs613870 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8638;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46826715 rs572248 T A 100 PASS AA=a;AC=2;AF=0.86;AFR_AF=0.58;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9941;ERATE=0.0035;EUR_AF=0.93;LDAF=0.8591;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +6 46826844 rs571247 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8637;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +6 46826910 rs611779 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8638;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +6 46826979 rs9381487 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.40;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9983;ERATE=0.0012;EUR_AF=0.22;LDAF=0.3134;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.89 +6 46827073 rs547499 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.17;AMR_AF=0.62;AN=2;ASN_AF=0.60;AVGPOST=0.9990;ERATE=0.0009;EUR_AF=0.71;LDAF=0.5474;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-3.52,-0.00,-5.00 +6 46827126 rs610856 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8638;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +6 46827239 rs9395218 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.32;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2914;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 46828670 rs540727 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8638;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46832741 rs529201 T C 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8638;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46832813 rs614826 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.14;AMR_AF=0.61;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5388;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46834685 rs586024 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8638;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46856100 rs678312 G A 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.97;AMR_AF=0.84;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.86;LDAF=0.8867;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46867717 rs220702 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.87;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9086;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 46976812 rs1226475 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.48;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1805;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 46977304 rs151335777 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 46977458 rs937057 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.48;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1805;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 46977475 rs73480725 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 47522357 rs9473132 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4954;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 47563692 rs2039503 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9845;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 47567017 rs9473135 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.12;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0324;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 47577064 rs9395287 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4968;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 47681494 rs6916562 T C 100 PASS AA=t;AC=2;AF=0.83;AFR_AF=0.68;AMR_AF=0.90;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8327;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 47682604 rs9369738 A C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.68;AMR_AF=0.90;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8318;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 47684591 rs1360157 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4868;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 47686101 rs6914013 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 49403282 rs8589 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.58;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5234;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 49415448 rs2229385 C T 100 PASS AA=C;AC=2;AF=0.10;AFR_AF=0.10;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0951;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 49425521 rs2229384 C T 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.59;AMR_AF=0.42;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5302;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 49440599 rs7759308 T A 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.23;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2111;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +6 50712784 rs3765306 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.56;AMR_AF=0.38;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4639;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 51483961 rs9381994 T C 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.45;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5577;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 51491884 rs4715227 T C 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.45;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5416;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 51586771 rs9349593 G A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.92;AVGPOST=0.9975;ERATE=0.0109;EUR_AF=0.56;LDAF=0.7133;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 51613177 rs765525 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.04;AMR_AF=0.46;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4072;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 51618170 rs1326605 T G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.90;AMR_AF=0.78;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8385;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 51640751 rs3920621 C G 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.05;AMR_AF=0.48;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4172;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 51695647 rs1571084 A T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.62;AMR_AF=0.32;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.39;LDAF=0.3511;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 51732807 rs12210295 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.31;AMR_AF=0.47;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.3976;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 51799166 rs1266889 T C 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.80;AMR_AF=0.69;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.67;LDAF=0.7706;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 51875250 rs2435322 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9675;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 51889483 rs45517932 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 51917968 rs4715271 T G 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0717;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 51923409 rs4715272 A T 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1152;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 51924774 rs1896976 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9698;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 51938242 rs9474140 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.37;AMR_AF=0.25;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3158;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 51947237 rs9474143 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.44;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3363;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 51947257 rs6901799 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.08;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0786;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 52051274 rs3819025 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0033;EUR_AF=0.05;LDAF=0.1386;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 52129484 rs2230240 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1380;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 52147692 rs2307322 T A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.41;AMR_AF=0.45;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4574;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 52268008 rs3748066 T G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.62;AMR_AF=0.42;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3734;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 52268890 rs17591381 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1042;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 52269046 rs3799274 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.22;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1225;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 52617731 rs2180314 C G 100 PASS AA=c;AC=2;AF=0.55;AFR_AF=0.27;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5554;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 52697825 rs4715345 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.96;AN=2;ASN_AF=0.98;AVGPOST=0.9790;ERATE=0.0051;EUR_AF=0.99;LDAF=0.9629;RSQ=0.8164;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.56,-0.00 +6 52697834 rs4715346 C A 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9662;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +6 52701143 rs2397118 C T 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9117;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 52702324 rs4715350 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 52847551 rs316133 G C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.47;AMR_AF=0.48;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5699;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 52849342 rs45507994 A G 100 PASS AA=A;AC=1;AF=0.0046;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 52998834 rs2816345 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.76;AMR_AF=0.79;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7189;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.74,-0.01 +6 52998856 rs2518573 T G 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.60;AMR_AF=0.77;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6764;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 53140928 rs2294864 T A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.92;AMR_AF=0.58;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.47;LDAF=0.5711;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 53365019 rs661346 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 53516876 rs6928338 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9944;RSQ=0.9100;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.75,-0.01 +6 53519062 rs10948758 A G 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.55;AMR_AF=0.78;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6823;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 53519605 rs3799260 C T 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.84;AMR_AF=0.88;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8433;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 53519857 rs12210809 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.17;AMR_AF=0.65;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5018;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 53520088 rs2038939 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9269;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 53883843 rs17625497 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2148;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 54025155 rs10484648 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.11;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1184;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 54025539 rs78446650 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0005;LDAF=0.0055;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 54054686 rs6934690 T A 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.60;AMR_AF=0.87;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.8131;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 54095524 rs2275769 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.23;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1467;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 54173413 rs2297980 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0672;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 54186147 rs1058768 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.82;AMR_AF=0.62;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7499;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 54219290 rs45545344 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.14;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1170;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 54219326 rs3195579 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.14;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1175;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 54735122 rs1472679 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.3601;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 55142337 rs2653349 A G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.88;AMR_AF=0.87;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8711;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 55216005 rs870806 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.34;AMR_AF=0.45;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.57;LDAF=0.4763;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 55266625 rs9370418 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.64;AMR_AF=0.78;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7358;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 55381262 rs6459082 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.57;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6631;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 55739553 rs3734444 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.61;AMR_AF=0.51;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4234;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 56417282 rs4715630 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.94;AMR_AF=0.74;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8076;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 56417545 rs4715631 T C 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.60;AMR_AF=0.70;AN=2;ASN_AF=0.68;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.75;LDAF=0.6878;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 56422216 rs16887983 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0389;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 56911574 rs9382680 A G 100 PASS AA=g;AC=1;AF=0.20;AFR_AF=0.26;AMR_AF=0.16;AN=2;ASN_AF=0.18;AVGPOST=0.9800;ERATE=0.0355;EUR_AF=0.19;LDAF=0.2004;RSQ=0.9572;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-5.00 +6 56917538 rs6926980 G A 100 PASS AA=a;AC=1;AF=0.22;AFR_AF=0.37;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.2176;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 56919443 rs61740375 A G 100 PASS AA=a;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.08;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0846;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 56998023 rs3757296 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.19;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1088;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 57006933 rs2273921 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.36;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.2171;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 57012930 rs3734738 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.37;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.2189;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 57055354 rs1040461 C T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1060;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 62390916 rs1204114 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.33;AMR_AF=0.65;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.6074;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 62407067 rs1555167 G T 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.12;AMR_AF=0.44;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3802;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 62887099 rs6921170 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5960;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 66044927 rs61753610 T C 100 PASS AA=t;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1202;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 66045077 rs1502965 C T 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9863;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 66063513 rs1936439 G A 100 PASS AA=a;AC=1;AF=0.64;AFR_AF=0.64;AMR_AF=0.63;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6399;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 66112409 rs974110 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.53;AMR_AF=0.44;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5009;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 69666520 rs7757138 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.35;AMR_AF=0.19;AN=2;ASN_AF=0.06;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2317;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 69666684 rs1932618 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.90;AMR_AF=0.89;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.85;LDAF=0.8848;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 69759148 rs618372 A T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9492;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 70064187 rs2296974 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1915;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 70386320 rs3214021 C T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.20;AMR_AF=0.41;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4077;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +6 70407465 rs9354880 A T 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.15;AMR_AF=0.40;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3934;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 70423739 rs2305837 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 70778297 rs7349861 G A 100 PASS AA=G;AC=2;AF=0.15;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.1536;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 70778378 rs78801645 G C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.57;AMR_AF=0.33;AN=2;ASN_AF=0.20;AVGPOST=0.9908;ERATE=0.0069;EUR_AF=0.50;LDAF=0.4056;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 70778379 rs2224514 C T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.57;AMR_AF=0.33;AN=2;ASN_AF=0.20;AVGPOST=0.9909;ERATE=0.0074;EUR_AF=0.49;LDAF=0.4055;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 70812123 rs7772672 A G 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.98;AMR_AF=0.84;AN=2;ASN_AF=0.55;AVGPOST=0.9989;ERATE=0.0115;EUR_AF=0.95;LDAF=0.8364;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0191;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 70878156 rs62421668 A G 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.13;AMR_AF=0.15;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2034;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 70897967 rs3828775 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.23;AMR_AF=0.19;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2473;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +6 71190577 rs2273210 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1851;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 71236216 rs7740873 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.50;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2386;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 71238105 rs2747701 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.48;LDAF=0.3569;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 71269459 rs16869371 C T 100 PASS AA=c;AC=1;AF=0.16;AFR_AF=0.18;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1554;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 71269632 rs16869373 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.19;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1586;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 71289189 rs1048886 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.34;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2045;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 72006187 rs2273889 A T 100 PASS AA=a;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0717;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 72011086 rs16880821 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0718;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 72889472 rs2249021 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.83;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7526;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 72892257 rs2463730 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9839;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +6 73332040 rs3734212 C G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.28;AMR_AF=0.45;AN=2;ASN_AF=0.46;AVGPOST=0.9846;ERATE=0.0014;EUR_AF=0.72;LDAF=0.5070;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +6 73332121 rs34821312 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.13;AN=2;ASN_AF=0.0035;AVGPOST=0.9901;ERATE=0.0013;EUR_AF=0.22;LDAF=0.1167;RSQ=0.9645;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +6 74079024 rs496530 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.32;AMR_AF=0.49;AN=2;ASN_AF=0.59;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5130;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 74079041 rs497243 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.89;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9752;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 74119084 rs4708053 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.77;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9483;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 74155346 rs610913 G T 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5144;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +6 74155491 rs2985419 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 74161503 rs9446904 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.89;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8833;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.38,-0.00 +6 74161740 rs34985291 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9966;ERATE=0.0010;EUR_AF=0.03;LDAF=0.0120;RSQ=0.8698;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.42,-0.21,-2.19 +6 74161801 rs9352000 G T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.89;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.85;LDAF=0.8833;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +6 74189574 rs7766570 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 74228006 rs1874229 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.65;AMR_AF=0.63;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6544;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 74228049 rs1874230 A G 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.35;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5019;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 74229258 rs2073466 G T 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.38;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.69;LDAF=0.5087;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 74466377 rs6453696 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.76;AMR_AF=0.65;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6705;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 74493432 rs10455097 A C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.67;AMR_AF=0.52;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5417;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 74496984 rs45572237 A G 100 PASS AA=A;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 74521947 rs2917862 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4214;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 74528293 rs3005506 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.32;AMR_AF=0.45;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4428;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 74533192 rs2917887 T G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.70;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8812;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 75797302 rs970547 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.65;AMR_AF=0.79;AN=2;ASN_AF=0.68;AVGPOST=0.9750;ERATE=0.0243;EUR_AF=0.77;LDAF=0.7197;RSQ=0.9562;SNPSOURCE=LOWCOV,EXOME;THETA=0.0168;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 75804783 rs10943236 G A 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.34;AMR_AF=0.10;AN=2;ASN_AF=0.18;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1460;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 75811291 rs3734191 T C 100 PASS AA=T;AC=1;AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0636;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 75814903 rs9447445 T A 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1489;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 75830974 rs499018 G C 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.61;AMR_AF=0.64;AN=2;ASN_AF=0.43;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.67;LDAF=0.5885;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 75830983 rs619607 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.21;AMR_AF=0.08;AN=2;ASN_AF=0.19;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1156;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 75841722 rs594012 A T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8939;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 75844600 rs1332020 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.42;AMR_AF=0.49;AN=2;ASN_AF=0.52;AVGPOST=0.9617;ERATE=0.0331;EUR_AF=0.42;LDAF=0.4577;RSQ=0.9466;SNPSOURCE=LOWCOV,EXOME;THETA=0.0406;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 75968720 rs147523 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9324;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 76022082 rs9352202 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.59;AMR_AF=0.58;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5481;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 76022090 rs9343281 G C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.81;AMR_AF=0.66;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6715;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 76344431 rs17414086 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1659;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 76369054 rs507662 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.68;AMR_AF=0.97;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.97;LDAF=0.8798;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 76373274 rs2783351 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.08;AMR_AF=0.49;AN=2;ASN_AF=0.41;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.36;LDAF=0.3339;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 76376552 rs17414687 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1873;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 76421003 rs3765140 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1869;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 76425288 rs9250 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.33;LDAF=0.1653;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 76554593 rs7760587 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 76596728 rs2295936 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.1586;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 76624741 rs12606 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.1586;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 76720990 rs2274349 A T 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3725;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 76744298 rs2274348 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2153;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 78171941 rs6297 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.86;LDAF=0.9031;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 79577412 rs41269339 C G 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0178;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 79577644 rs9350789 A C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.91;AMR_AF=0.90;AN=2;ASN_AF=0.91;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9006;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +6 79657391 rs1984195 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.29;AMR_AF=0.44;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4790;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 79679577 rs7742431 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.41;AMR_AF=0.46;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5160;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 79695029 rs1890229 C T 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.32;AMR_AF=0.44;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.4890;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 79707923 rs11752126 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3826;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 79708000 rs7747479 A C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9442;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 79918309 rs9341761 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.81;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=0.9776;ERATE=0.0248;EUR_AF=0.90;LDAF=0.9026;RSQ=0.9076;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 80196848 rs1875845 C T 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.55;AMR_AF=0.35;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3510;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 80228535 rs34068461 T G 100 PASS AA=T;AC=2;AF=0.17;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1718;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 80228541 rs2655655 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.87;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8880;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 80631539 rs700483 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 80724156 rs2295840 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.09;AMR_AF=0.47;AN=2;ASN_AF=0.63;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3834;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 80724312 rs239566 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.69;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6504;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 80741243 rs1801465 A T 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.0786;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 80749972 rs1801460 A C 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.0658;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 80750290 rs608962 C T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.61;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6321;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 80751942 rs17254634 G A 100 PASS AA=g;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.0786;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 80837239 rs9448893 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.07;AMR_AF=0.57;AN=2;ASN_AF=0.55;AVGPOST=0.9986;ERATE=0.0014;EUR_AF=0.46;LDAF=0.4155;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 82921339 rs9341913 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.31;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2569;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 82922388 rs9353057 C T 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 82933309 rs9361904 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 83075914 rs700494 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.74;AMR_AF=0.72;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6650;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 83733785 rs4235816 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.44;AMR_AF=0.69;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6515;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +6 83828724 rs2148010 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.76;AMR_AF=0.78;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7550;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 83933491 rs116402692 G A 100 PASS AA=G;AC=1;AF=0.0037;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 83949261 rs1180230 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.60;AMR_AF=0.42;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4314;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 84108065 rs4706990 A T 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.80;AMR_AF=0.54;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4945;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 84233831 rs504593 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9613;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 84284880 rs2022269 T A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.85;AMR_AF=0.82;AN=2;ASN_AF=0.91;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8169;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 84317533 rs7752421 A T 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.18;AMR_AF=0.39;AN=2;ASN_AF=0.43;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3757;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 85472367 rs200869232 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0010;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 85473758 rs172562 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.10;AMR_AF=0.42;AN=2;ASN_AF=0.48;AVGPOST=0.9890;ERATE=0.0005;EUR_AF=0.51;LDAF=0.3924;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.900:-0.05,-0.98,-5.00 +6 86180926 rs10944129 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.31;AMR_AF=0.66;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.58;LDAF=0.4675;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +6 86199233 rs2229523 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.95;AMR_AF=0.84;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7582;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.00,-0.00 +6 86199329 rs9450284 G C 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.39;AMR_AF=0.77;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5718;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 87797956 rs67797329 C A 100 PASS AA=a;AC=1;AF=0.55;AFR_AF=0.74;AMR_AF=0.63;AN=2;ASN_AF=0.51;AVGPOST=0.9247;ERATE=0.0776;EUR_AF=0.42;LDAF=0.5340;RSQ=0.9173;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 87943281 rs16878734 A T 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.20;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0658;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 87965528 rs6908834 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.29;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=0.9916;ERATE=0.0048;EUR_AF=0.38;LDAF=0.4045;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 87968565 rs9362415 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.61;AMR_AF=0.66;AN=2;ASN_AF=0.57;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5626;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 87969341 rs16878809 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.21;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.04;LDAF=0.0676;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 87969480 rs6910541 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.11;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1261;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 87969737 rs3734187 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.61;AMR_AF=0.66;AN=2;ASN_AF=0.57;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5619;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 87970301 rs3812132 C G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.84;AMR_AF=0.70;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6334;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 87994015 rs6934603 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.58;AMR_AF=0.66;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5535;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 87994101 rs41273281 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.20;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0660;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 87994550 rs41273283 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.20;AMR_AF=0.04;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0660;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 87994572 rs4707358 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.86;AMR_AF=0.70;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6399;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 88119693 rs6454616 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.40;AMR_AF=0.29;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2975;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 88170710 rs73492299 A T 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.24;AMR_AF=0.42;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2907;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 88182704 rs9450704 G C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.80;AMR_AF=0.71;AN=2;ASN_AF=0.50;AVGPOST=0.9918;ERATE=0.0014;EUR_AF=0.52;LDAF=0.6093;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-2.85,-0.46,-0.19 +6 88221103 rs56136150 T C 100 PASS AA=-;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.13;AN=2;ASN_AF=0.14;AVGPOST=0.9967;ERATE=0.0017;EUR_AF=0.11;LDAF=0.1223;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 88224164 rs8802 T C 100 PASS AA=T;AC=2;AF=0.14;AFR_AF=0.18;AMR_AF=0.15;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1399;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 88226641 rs9450723 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.78;AMR_AF=0.71;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6211;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 88251642 rs75794097 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 88255438 rs4707374 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.78;AMR_AF=0.71;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6216;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 88315689 rs2307371 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0146;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 88321997 rs7752473 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1266;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 88366708 rs2307373 C T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.21;AMR_AF=0.38;AN=2;ASN_AF=0.51;AVGPOST=0.9974;ERATE=0.0205;EUR_AF=0.42;LDAF=0.3923;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 88769299 rs117078336 G A 100 PASS AA=G;AC=1;AF=0.0032;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0033;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 89323961 rs2236287 T G 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.36;AMR_AF=0.19;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2226;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 89388023 rs11753513 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.37;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.39;LDAF=0.2470;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 89793894 rs1130809 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.26;AMR_AF=0.34;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.18;LDAF=0.3519;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 89814830 rs7753709 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.76;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7571;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 89888443 rs3734201 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.42;AMR_AF=0.47;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3903;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 89888744 rs1796743 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.51;AMR_AF=0.38;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4591;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 89891582 rs404943 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.34;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3830;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 89895202 rs406462 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4054;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 89895207 rs364936 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4054;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 89907873 rs422751 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.67;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8354;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 89913108 rs4590241 C G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7345;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 89913112 rs4457139 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7345;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 89913209 rs4590242 C T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7349;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 89913218 rs4445034 T A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.74;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=0.9973;ERATE=0.0048;EUR_AF=0.66;LDAF=0.7602;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 90090024 rs16881819 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.12;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 90315789 rs3748085 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.69;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8391;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90333106 rs78272179 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=0.9986;ERATE=0.0017;EUR_AF=0.0013;LDAF=0.0106;RSQ=0.9415;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 90333599 rs17292811 A G 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.87;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.84;LDAF=0.8977;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90338863 rs9353687 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.20;AMR_AF=0.13;AN=2;ASN_AF=0.23;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1916;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 90340276 rs3210511 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.61;AMR_AF=0.67;AN=2;ASN_AF=0.91;AVGPOST=0.9973;ERATE=0.0011;EUR_AF=0.48;LDAF=0.6546;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90371202 rs9444701 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.71;AMR_AF=0.77;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7619;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90371986 rs3818132 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.61;AMR_AF=0.67;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6589;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90387329 rs35509794 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0238;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 90390443 rs9353689 C A 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.63;AMR_AF=0.68;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6632;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90402482 rs9294445 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.62;AMR_AF=0.67;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6553;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90402840 rs9351212 C G 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.78;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9950;ERATE=0.0032;EUR_AF=0.79;LDAF=0.8535;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90405306 rs9294446 T A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9236;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90415764 rs7743484 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.85;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8922;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90418262 rs2026634 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.80;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8780;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90425390 rs115497826 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 90428968 rs6454774 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8761;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90432662 rs756363 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8771;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90437699 rs7767196 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.80;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0046;EUR_AF=0.84;LDAF=0.8803;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90448092 rs4140446 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8770;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90450135 rs2180140 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.43;AMR_AF=0.54;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4670;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 90453248 rs2273245 T C 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.62;AMR_AF=0.67;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6572;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90455084 rs9359861 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9227;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90459454 rs4053618 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.92;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8830;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 90461123 rs4707563 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.13;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1861;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 90482397 rs12110451 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.13;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1874;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 90500117 rs76489362 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0242;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 90605836 rs7738845 T A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.70;AMR_AF=0.74;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.7139;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 90660319 rs9451298 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.46;AMR_AF=0.20;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2920;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 90661576 rs2236181 T C 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.49;AMR_AF=0.41;AN=2;ASN_AF=0.67;AVGPOST=0.9987;ERATE=0.0008;EUR_AF=0.35;LDAF=0.4765;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 93964319 rs345736 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.82;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7826;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 93967851 rs345730 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.62;AMR_AF=0.69;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0014;EUR_AF=0.72;LDAF=0.7242;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 93982124 rs345713 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.99;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8889;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 94067981 rs164544 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.88;AMR_AF=0.59;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7185;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 94120192 rs474809 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.83;AMR_AF=0.57;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6384;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 94120219 rs2278106 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0640;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 94120639 rs2278107 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0645;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 94124530 rs540816 C A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.83;AMR_AF=0.57;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6354;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 96651740 rs3811069 A G 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.68;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9218;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 97058574 rs2252816 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.04;AMR_AF=0.45;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3639;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 97339078 rs6684 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.37;AMR_AF=0.54;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5261;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 97339088 rs11402 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9323;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 97599612 rs3822908 T C 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2701;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 99283376 rs195860 T G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=0.96;AVGPOST=0.9953;ERATE=0.0008;EUR_AF=0.87;LDAF=0.9096;RSQ=0.9742;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +6 99771540 rs221527 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.86;LDAF=0.9269;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 99817601 rs4144164 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9506;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 99819379 rs6925344 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.71;AMR_AF=0.89;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.83;LDAF=0.8112;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 99825227 rs7764793 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.44;AMR_AF=0.54;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4086;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 99853866 rs7744072 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9680;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 99883704 rs6570065 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 99894086 rs41288947 C G 100 PASS AA=C;AC=2;AF=0.23;AFR_AF=0.16;AMR_AF=0.33;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2253;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 99951750 rs6934692 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.9077;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 100957344 rs240768 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.12;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1138;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 100964147 rs240780 G C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.95;AMR_AF=0.64;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=0.56;LDAF=0.7125;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 100966006 rs3213542 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1059;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 101054999 rs395521 C T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6161;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 101094554 rs239239 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6115;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 101166095 rs41288423 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.52;AMR_AF=0.44;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.4250;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 101215244 rs7746961 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.69;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5996;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 101253788 rs4839792 A T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.69;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5993;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +6 101312097 rs846791 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9813;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 101312104 rs705600 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.68;AMR_AF=0.71;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7304;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 102134022 rs2786251 C G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.69;AMR_AF=0.37;AN=2;ASN_AF=0.48;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.4133;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 102247673 rs6922753 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.48;AMR_AF=0.24;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3724;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 102376517 rs2243355 G A 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.01;AMR_AF=0.30;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.35;LDAF=0.1940;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 105244526 rs6918700 A T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.79;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5507;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 105259152 rs2168394 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.78;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5484;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 105300250 rs9499992 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.39;AMR_AF=0.20;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2623;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 105307435 rs2499655 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.21;AMR_AF=0.47;AN=2;ASN_AF=0.59;AVGPOST=0.9698;ERATE=0.0033;EUR_AF=0.50;LDAF=0.4557;RSQ=0.9550;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-0.17,-0.49,-2.82 +6 105577401 rs4946656 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.67;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8816;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 106555025 rs1010273 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.20;AVGPOST=0.9977;ERATE=0.0018;EUR_AF=0.12;LDAF=0.1145;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 106634569 rs41292420 C T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.20;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1101;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 106727719 rs1624701 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.10;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0801;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 106756282 rs77859116 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0005;LDAF=0.0079;RSQ=0.9832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 106960447 rs11152999 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2709;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 106960957 rs1381552 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.29;AN=2;ASN_AF=0.56;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2870;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 106967185 rs1159148 A C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1709;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 106987370 rs783396 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.94;AMR_AF=0.93;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9278;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 106992464 rs1799693 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9561;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 106992592 rs2247335 A T 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.70;AMR_AF=0.87;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8455;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 106992844 rs2066201 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.70;AMR_AF=0.87;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8459;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 106999822 rs2297970 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.21;AN=2;ASN_AF=0.05;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1806;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 107001456 rs1770731 A T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.78;AMR_AF=0.90;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.85;LDAF=0.8483;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 107003686 rs141300996 G A 100 PASS AA=G;AC=1;AF=0.0027;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0027;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +6 107003810 rs2066202 T C 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.50;AMR_AF=0.75;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7006;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 107006347 rs4946763 T C 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.38;AMR_AF=0.64;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6070;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 107069273 rs1870867 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.57;AMR_AF=0.42;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4415;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 107070665 rs112030542 G A 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.0026;LDAF=0.0046;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +6 107076696 rs1824619 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.24;AMR_AF=0.08;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.1209;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 107076783 rs1987623 A T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.59;AMR_AF=0.46;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.30;LDAF=0.4717;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 107077550 rs3747792 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.25;AMR_AF=0.08;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.1225;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +6 107096853 rs9486434 A C 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.33;AMR_AF=0.42;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3465;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 107111084 rs72613241 T G 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0832;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 107113715 rs2015205 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3484;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 107361476 rs311207 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.86;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.98;LDAF=0.9536;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 107391396 rs3814073 G A 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.38;AVGPOST=0.9956;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2567;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.83,-0.00 +6 107420516 rs4946811 A C 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.07;AMR_AF=0.54;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3629;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 107533265 rs3734677 G A 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.26;AMR_AF=0.15;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1914;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 107655358 rs3764914 A C 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0672;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 107780479 rs3734676 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0325;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 107780483 rs3734675 A G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0325;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 107956095 rs9486659 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.80;AMR_AF=0.87;AN=2;ASN_AF=0.87;AVGPOST=0.8091;ERATE=0.0119;EUR_AF=0.95;LDAF=0.8383;RSQ=0.4446;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.550:-0.48,-0.48,-0.48 +6 108042213 rs846977 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9223;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 108042216 rs3734756 C T 100 PASS AA=C;AC=2;AF=0.09;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0013;EUR_AF=0.08;LDAF=0.0864;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 108233929 rs675117 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.92;AMR_AF=0.90;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8263;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 108677003 rs2135941 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 108687496 rs56005804 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0110;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 108882830 rs111556510 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.05;LDAF=0.0307;RSQ=0.9494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +6 109294752 rs3734649 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0782;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109322477 rs10457185 G C 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0699;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109322554 rs12214121 C T 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0777;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109323519 rs2273668 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0699;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109480562 rs61743581 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0969;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109703391 rs1885691 C T 100 PASS AA=c;AC=2;AF=0.56;AFR_AF=0.76;AMR_AF=0.51;AN=2;ASN_AF=0.57;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.44;LDAF=0.5556;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.76,-0.08 +6 109721228 rs4946972 A C 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0818;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 109762600 rs749621 A C 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.13;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0910;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 109764535 rs1476387 G T 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.75;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5329;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 109766471 rs34681234 T A 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0110;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 109767930 rs9320288 G T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.73;AMR_AF=0.47;AN=2;ASN_AF=0.47;AVGPOST=0.9948;ERATE=0.0189;EUR_AF=0.41;LDAF=0.5073;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +6 109767931 rs59056467 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.9955;ERATE=0.0115;EUR_AF=0.33;LDAF=0.3073;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109768295 rs910730 G A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.75;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9990;ERATE=0.0023;EUR_AF=0.43;LDAF=0.5302;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 109769216 rs4946975 A C 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0036;EUR_AF=0.08;LDAF=0.1043;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 109770999 rs752262 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3164;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109773731 rs141863174 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0106;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 109775366 rs4946977 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0993;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-3.52,-0.00,-5.00 +6 109775436 rs2277113 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.75;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9976;ERATE=0.0007;EUR_AF=0.43;LDAF=0.5335;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.55,-0.00 +6 109798153 rs117893130 A T 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0119;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109803084 rs147441359 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 109954252 rs1406957 C T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.32;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6337;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 109993291 rs12197838 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.17;AMR_AF=0.40;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3670;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 110036274 rs56378532 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0411;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 110059510 rs2273752 C A 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.15;AMR_AF=0.40;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3464;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 110106234 rs10499054 A G 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.11;AMR_AF=0.55;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.65;LDAF=0.4293;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 110146303 rs9398218 G A 100 PASS AA=g;AC=2;AF=0.39;AFR_AF=0.10;AMR_AF=0.43;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.3844;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 110643956 rs6908306 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.91;LDAF=0.9522;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 110679413 rs62435951 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.47;AMR_AF=0.52;AN=2;ASN_AF=0.47;AVGPOST=0.9424;ERATE=0.0053;EUR_AF=0.62;LDAF=0.5273;RSQ=0.9104;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.68,-0.10 +6 110757008 rs7765849 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1179;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 110777962 rs6907567 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.26;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3058;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 110778128 rs714368 T C 100 PASS AA=t;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.26;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3057;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 110797708 rs62421708 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.71;AMR_AF=0.68;AN=2;ASN_AF=0.87;AVGPOST=0.6938;ERATE=0.0210;EUR_AF=0.65;LDAF=0.6811;RSQ=0.4568;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.300:-0.48,-0.48,-0.48 +6 110797709 rs62421709 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=0.8840;ERATE=0.0133;EUR_AF=0.90;LDAF=0.8758;RSQ=0.6011;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +6 110797710 . G A 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.83;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=0.8658;ERATE=0.0117;EUR_AF=0.90;LDAF=0.8629;RSQ=0.5570;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.68,-0.10 +6 110797821 rs11153236 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.97;AMR_AF=0.95;AN=2;ASN_AF=0.97;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9690;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.54,-0.01 +6 111337078 rs4947093 A G 100 PASS AA=a;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0503;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 111527988 rs402940 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.60;AMR_AF=0.80;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7491;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 111587266 rs11153279 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.10;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4689;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 111695073 rs455645 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.35;AMR_AF=0.72;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5910;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 111695268 rs455732 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.06;AMR_AF=0.44;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3780;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 111695887 rs462779 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.35;AMR_AF=0.72;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5909;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 111696257 rs461646 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.35;AMR_AF=0.72;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5909;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 111696852 rs458486 T C 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.06;AMR_AF=0.44;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3780;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 111901453 rs1043730 G T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.9090;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 112015741 rs804187 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0219;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112015823 rs804186 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0219;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112017448 rs812500 G C 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0206;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112375644 rs2280153 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.24;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2536;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112382313 rs1230345 G T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.45;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.23;LDAF=0.3006;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112408405 rs116744223 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=0.9979;ERATE=0.0005;LDAF=0.0062;RSQ=0.8683;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:0.950:-2.07,-0.00,-3.70 +6 112408610 rs6568714 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.45;AMR_AF=0.24;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3052;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.85,-0.01,-1.63 +6 112435264 rs3734290 T G 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.24;AMR_AF=0.23;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2543;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112435273 rs3734289 A C 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.24;AMR_AF=0.23;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2543;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112435912 rs1050353 A T 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0060;EUR_AF=0.25;LDAF=0.2926;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112457383 rs1050349 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.13;AMR_AF=0.22;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.22;LDAF=0.2332;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112457390 rs2032567 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.87;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7952;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 112457471 rs2032568 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.88;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7961;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 112460541 rs2072019 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.40;AMR_AF=0.23;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3191;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112471688 rs3734286 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.24;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3304;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112493872 rs1050348 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.79;AMR_AF=0.71;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7242;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 112496484 rs201260900 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 112506583 rs6908219 G T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.85;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8707;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 116429623 rs517352 T A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.48;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6262;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 116429631 rs56116396 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0384;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 116441646 rs2228547 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.26;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1824;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 116446576 rs1064583 A G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.70;AMR_AF=0.37;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4238;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 116575083 rs2232470 C A 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.96;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.67;LDAF=0.8352;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 116600774 rs3749895 C G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.32;AMR_AF=0.36;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4063;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 116720487 rs10485183 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1662;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 116757557 rs560644 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9637;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 116783390 rs10784 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.52;AMR_AF=0.74;AN=2;ASN_AF=0.92;AVGPOST=0.9769;ERATE=0.0020;EUR_AF=0.72;LDAF=0.7301;RSQ=0.9575;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-2.89,-0.46,-0.19 +6 116783585 rs76716752 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.01;AN=2;AVGPOST=0.9949;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0437;RSQ=0.9606;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.34 +6 116836720 rs881863 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.13;AMR_AF=0.54;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4150;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 116878947 rs6906668 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.42;AMR_AF=0.70;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6604;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 116950833 rs784133 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.95;AMR_AF=0.63;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6580;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 117086265 rs641338 C A 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.70;AMR_AF=0.65;AN=2;ASN_AF=0.51;AVGPOST=0.9957;ERATE=0.0008;EUR_AF=0.47;LDAF=0.5606;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 117114290 rs35937022 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.1399;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 117114403 rs6901971 G A 100 PASS AA=g;AC=2;AF=0.68;AFR_AF=0.74;AMR_AF=0.77;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.6851;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 117121894 rs6917467 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9849;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 117130544 rs28360548 A C 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.1847;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 117130704 rs2274911 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.74;AMR_AF=0.77;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.6851;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 117587054 rs433425 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.57;AMR_AF=0.27;AN=2;ASN_AF=0.20;AVGPOST=0.9971;ERATE=0.0017;EUR_AF=0.25;LDAF=0.3128;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 117591755 rs13194610 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.33;AMR_AF=0.10;AN=2;ASN_AF=0.12;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.10;LDAF=0.1577;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.97,-0.00,-5.00 +6 117678083 rs2243384 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.20;AMR_AF=0.42;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4072;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 117680945 rs113151724 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0074;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 117686943 rs2243383 A T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.71;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5886;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 117704607 rs34582164 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0096;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 117708971 rs9489143 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0595;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 117714346 rs1535330 C G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.67;AMR_AF=0.54;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5352;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 117718303 rs9401003 A G 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.58;AMR_AF=0.32;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 117724462 rs2243379 C A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.89;AMR_AF=0.50;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.50;LDAF=0.5995;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 117725578 rs2243378 T A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.89;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6106;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 117730819 rs2273601 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.46;AMR_AF=0.19;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2971;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 117730824 rs140610109 A G 100 PASS AA=A;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 117842669 rs72963484 T A 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9984;ERATE=0.0059;EUR_AF=0.16;LDAF=0.0902;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 118556628 rs9489326 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.36;AMR_AF=0.46;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.58;LDAF=0.4259;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 118886961 rs3734382 G T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.76;AMR_AF=0.54;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.74;LDAF=0.5996;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 118887303 rs3734381 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.55;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.54;LDAF=0.4287;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 119232799 rs76967739 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0146;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 119501618 rs6569054 A T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.47;AMR_AF=0.27;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.21;LDAF=0.3103;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 119510941 rs2072890 C A 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.34;AMR_AF=0.66;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.85;LDAF=0.6920;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 121436422 rs7772508 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9921;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 121560191 rs10214599 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.21;AMR_AF=0.02;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0761;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 121577370 rs7745023 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.58;LDAF=0.2936;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 121620608 rs9387944 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 121624945 rs73526687 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.03;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0699;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 121632008 rs9372653 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 122752704 rs58931802 C T 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0005;LDAF=0.0027;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 123101647 rs2243372 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.52;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6109;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 123369910 rs6900862 T C 100 PASS AA=C;AC=1;AF=0.93;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9340;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 125144352 rs2025251 T G 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.05;AMR_AF=0.47;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3962;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 125475139 rs2277111 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.41;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2335;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 126080522 rs61737181 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.0035;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0537;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 126249914 rs1567 T G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.24;AMR_AF=0.07;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1568;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 126278230 rs2295005 G C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.76;AMR_AF=0.67;AN=2;ASN_AF=0.95;AVGPOST=0.9975;ERATE=0.0006;EUR_AF=0.50;LDAF=0.7031;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.49 +6 126288023 rs3757212 T C 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.82;AMR_AF=0.77;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7924;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 126334041 rs2206941 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.83;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7912;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 127471533 rs9491699 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.29;AMR_AF=0.47;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4253;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 127476516 rs1892172 G A 100 PASS AA=g;AC=1;AF=0.53;AFR_AF=0.62;AMR_AF=0.52;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5303;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 127768762 rs6902288 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.53;AMR_AF=0.43;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4099;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 127770923 rs3818135 A C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.53;AMR_AF=0.43;AN=2;ASN_AF=0.07;AVGPOST=0.9982;ERATE=0.0024;EUR_AF=0.58;LDAF=0.4120;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 127771452 rs3734447 T G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.53;AMR_AF=0.44;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4135;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 127836860 rs61741828 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9956;ERATE=0.0007;EUR_AF=0.02;LDAF=0.0186;RSQ=0.9030;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-3.12,-0.47,-0.18 +6 127898305 rs9388590 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.21;AMR_AF=0.60;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5120;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 128040839 rs675531 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.70;AMR_AF=0.45;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5018;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 128134685 rs10872326 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9923;ERATE=0.0089;EUR_AF=0.06;LDAF=0.0506;RSQ=0.9411;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 128176383 rs270032 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.58;AMR_AF=0.68;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6741;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 128298018 rs138792006 A C 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 128330249 rs9321104 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.74;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9036;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 128388799 rs35030557 G T 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.44;LDAF=0.3009;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 128403745 rs17828130 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.15;AMR_AF=0.65;AN=2;ASN_AF=0.62;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.64;LDAF=0.5292;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 129371106 rs1140366 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0996;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 129381026 rs4404787 C A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9630;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 129622055 rs902373 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3190;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 129722389 rs3749877 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.71;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5484;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 129722425 rs3749878 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.71;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5476;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 129724942 rs3828735 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.71;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5443;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 129785391 rs1414736 T C 100 PASS AA=t;AC=1;AF=0.65;AFR_AF=0.87;AMR_AF=0.64;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.60;LDAF=0.6495;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 129807629 rs6569605 C T 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6042;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 129807699 rs6569606 G C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.43;AMR_AF=0.64;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6047;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 129905249 rs12197456 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0025;EUR_AF=0.07;LDAF=0.0376;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 130031215 rs3752536 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.80;AMR_AF=0.82;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.85;LDAF=0.7978;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 130152479 rs7758540 T C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.62;AMR_AF=0.44;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4593;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 130152520 rs7776426 A C 100 PASS AA=A;AC=2;AF=0.28;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2779;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 130154686 rs4629709 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6055;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 130164764 rs9321190 G A 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.73;AMR_AF=0.58;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6152;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 130374102 rs9388768 C A 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.11;AMR_AF=0.61;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5452;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 130381246 rs7451021 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.46;AMR_AF=0.70;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6801;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 130505374 rs41285310 A C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.41;AMR_AF=0.41;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3596;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 131184770 rs915172 T G 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.57;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.3734;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 131190838 rs17059736 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1540;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 131276473 rs45550834 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.65;AMR_AF=0.44;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.36;LDAF=0.5855;RSQ=0.9990;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 131958485 rs9375819 A C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8790;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 131973932 rs3765562 C G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2518;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0187;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 132043349 rs378697 A T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9648;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 132172368 rs1044498 A C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.87;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2926;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 132181673 rs9493113 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.42;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1613;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 132271952 rs7451102 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.1329;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.01 +6 132271959 rs12206231 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0497;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +6 132271980 rs6934749 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.0894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +6 132645195 rs35248832 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0025;RSQ=0.9544;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 132785224 rs3757299 A C 100 PASS AA=A;AC=2;AF=0.21;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 132910612 rs3813355 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.74;AMR_AF=0.69;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6423;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 132966279 rs8192620 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2198;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 133070995 rs4895944 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 133135864 rs12202302 T G 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.31;AMR_AF=0.51;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3167;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 133135886 rs9483504 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.79;AMR_AF=0.64;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5142;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 133138249 rs2236381 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.43;AMR_AF=0.58;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3953;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 133789728 rs9493627 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.57;AMR_AF=0.33;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3939;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 133827354 rs2277083 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.71;AMR_AF=0.67;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6862;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 133836430 rs56378005 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0092;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 134305494 rs2273097 A G 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.32;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1307;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 135287533 rs13064 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2907;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 135290355 rs35571217 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2907;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 135299959 rs13214669 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.38;LDAF=0.2842;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 135375762 rs2297338 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.36;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4723;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 135763866 rs2757645 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.50;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8471;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 136472439 rs4896201 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.28;AMR_AF=0.53;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.39;LDAF=0.4242;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 136590640 rs62431286 A C 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9941;ERATE=0.0577;EUR_AF=0.26;LDAF=0.2644;RSQ=0.9828;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 136594292 rs7381749 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9948;ERATE=0.0352;EUR_AF=0.21;LDAF=0.1912;RSQ=0.9844;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 136597281 rs1967445 A T 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.45;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4834;RSQ=0.9227;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 136597288 rs1967446 A C 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.45;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=0.9962;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4835;RSQ=0.9149;SNPSOURCE=EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 136599393 rs6940018 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.55;AMR_AF=0.55;AN=2;ASN_AF=0.51;AVGPOST=0.9956;ERATE=0.0023;EUR_AF=0.52;LDAF=0.5319;RSQ=0.9468;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 136599404 rs6919254 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.53;AMR_AF=0.56;AN=2;ASN_AF=0.52;AVGPOST=0.9969;ERATE=0.0039;EUR_AF=0.53;LDAF=0.5314;RSQ=0.9658;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 136599822 rs9942517 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4987;RSQ=0.8828;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 136599836 rs9942518 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.50;LDAF=0.4944;RSQ=0.9610;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 136599842 rs9942519 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.49;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4977;RSQ=0.8989;SNPSOURCE=EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 136682172 rs2076190 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.68;AMR_AF=0.78;AN=2;ASN_AF=0.67;AVGPOST=0.9971;ERATE=0.0013;EUR_AF=0.85;LDAF=0.7527;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +6 137026266 rs9321567 T G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.80;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5960;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 137113137 rs55666429 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.47;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=0.9959;ERATE=0.0006;EUR_AF=0.59;LDAF=0.5590;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.17,-0.00 +6 137323213 rs1342642 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.28;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 137325847 rs1555498 C T 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.47;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8720;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 137338276 rs433243 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.35;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8428;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 137519780 rs3799488 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1382;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 138413269 rs648396 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.53;AMR_AF=0.54;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5813;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 138413333 rs648802 G C 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.52;AMR_AF=0.54;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5782;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 138634896 rs2294443 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0937;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 139097174 rs1040773 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.10;AMR_AF=0.38;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3378;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 139183879 rs12204850 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.14;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2470;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 139487394 rs7768941 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.60;AMR_AF=0.51;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4326;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 139487836 rs3173082 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6029;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 142718801 rs989946 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9973;RSQ=0.8741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 142758631 rs1262686 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9998;RSQ=0.0497;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 143074700 rs169098 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.87;AMR_AF=0.70;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.62;LDAF=0.7482;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 143081847 rs197462 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.94;AMR_AF=0.75;AN=2;ASN_AF=0.83;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.67;LDAF=0.7860;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +6 143091263 rs109836 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9842;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 143092754 rs34875559 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0137;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 143654625 rs2303386 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.33;AMR_AF=0.54;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4283;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 143754938 rs3761999 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.60;AMR_AF=0.57;AN=2;ASN_AF=0.21;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.56;LDAF=0.4784;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 143792078 rs3762000 C G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.55;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3208;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 143806276 rs161058 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.87;AMR_AF=0.57;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.35;LDAF=0.5599;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 143816859 rs8161 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.52;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4338;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 143823112 rs3762001 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1819;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 143823157 rs3762002 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.33;AMR_AF=0.17;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2304;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 144033366 rs3762004 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.26;AN=2;ASN_AF=0.33;AVGPOST=0.9937;ERATE=0.0030;EUR_AF=0.10;LDAF=0.1828;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 144081609 rs2073214 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.30;AMR_AF=0.24;AN=2;ASN_AF=0.13;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1961;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 144081768 rs2073215 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.21;AMR_AF=0.18;AN=2;ASN_AF=0.41;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2219;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0098;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 144086394 rs9496767 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.42;AMR_AF=0.54;AN=2;ASN_AF=0.46;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4948;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 144093352 rs1018463 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.19;AN=2;ASN_AF=0.41;AVGPOST=0.9985;ERATE=0.0011;EUR_AF=0.11;LDAF=0.2188;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 144758799 rs4895642 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.79;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.4510;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 144809978 rs113814301 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.05;LDAF=0.0229;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 144838118 rs9403563 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.11;AN=2;ASN_AF=0.55;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2056;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 144843091 rs13208386 A T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9340;ERATE=0.0548;EUR_AF=0.37;LDAF=0.4286;RSQ=0.8907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-2.94,-0.00,-5.00 +6 144869785 rs1534443 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3569;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 144870040 rs1534442 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3565;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 144878337 rs2293536 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.11;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2285;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 144999763 rs9376837 A C 100 PASS AA=A;AC=2;AF=0.24;AFR_AF=0.13;AMR_AF=0.15;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2400;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 145051594 rs4305737 G A 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.90;AMR_AF=0.57;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.23;LDAF=0.6042;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 145075963 rs17074126 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0343;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 145079033 rs17074128 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0343;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 145093052 rs80110270 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0329;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 145162001 rs4895657 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.97;AMR_AF=0.63;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.37;LDAF=0.7061;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 145167978 rs9403617 C G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.08;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1444;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 146125466 rs9403747 T G 100 PASS AA=t;AC=1;AF=0.41;AFR_AF=0.58;AMR_AF=0.31;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4105;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 146125793 rs3811102 A T 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.22;AMR_AF=0.25;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.41;LDAF=0.2989;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 146126419 rs9373475 C T 100 PASS AA=c;AC=1;AF=0.31;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3080;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 146207563 rs1062067 A G 100 PASS AA=a;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.26;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3365;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 146234644 rs9497426 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.96;AMR_AF=0.87;AN=2;ASN_AF=0.80;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8285;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 146244743 rs6923545 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.72;AMR_AF=0.74;AN=2;ASN_AF=0.72;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6795;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 146268623 rs9386141 T A 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.45;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5982;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 146755140 rs2942 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.54;LDAF=0.5211;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 146755324 rs6923492 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.72;AMR_AF=0.48;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5675;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 146755515 rs6923864 T G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.92;AMR_AF=0.52;AN=2;ASN_AF=0.59;AVGPOST=0.9962;ERATE=0.0011;EUR_AF=0.57;LDAF=0.6479;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 146755560 rs1047006 T G 100 PASS AA=t;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.09;AVGPOST=0.9940;ERATE=0.0005;EUR_AF=0.41;LDAF=0.2272;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 146755842 rs9373491 C A 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.69;AMR_AF=0.48;AN=2;ASN_AF=0.53;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5606;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 147631201 rs6928919 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.42;AMR_AF=0.50;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 147635385 rs1039083 C G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.55;AMR_AF=0.56;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5005;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 147635413 rs1039084 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.42;AMR_AF=0.50;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.53;LDAF=0.4419;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 147635709 rs146162057 A G 100 PASS AA=A;AC=1;AF=0.0032;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0032;RSQ=0.9468;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 147680359 rs9390459 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.56;AMR_AF=0.53;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4830;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 147830073 rs66812182 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.38;AMR_AF=0.29;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2838;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 147885588 rs140643252 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.0026;LDAF=0.0014;RSQ=0.9548;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 148664404 rs55914407 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0520;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 148835416 rs1057793 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2075;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 148865257 rs208696 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.73;AMR_AF=0.63;AN=2;ASN_AF=0.35;AVGPOST=0.9974;ERATE=0.0022;EUR_AF=0.57;LDAF=0.5601;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 149068627 rs9498146 A T 100 PASS AA=t;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9925;ERATE=0.0013;EUR_AF=0.04;LDAF=0.0502;RSQ=0.9370;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.03,-0.00,-3.66 +6 149285719 rs3734377 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.33;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3364;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 149700491 rs3734296 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.05;AMR_AF=0.22;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2135;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 149721690 rs237025 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.79;AMR_AF=0.56;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6280;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 149730846 rs652921 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.05;AMR_AF=0.22;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2135;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 149953981 rs9800580 C T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.62;AMR_AF=0.60;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.5681;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 149983216 rs3924871 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.59;AMR_AF=0.60;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.35;LDAF=0.5617;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 149997657 rs62439843 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.89;AMR_AF=0.63;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.6371;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150004779 rs3798761 A G 100 PASS AA=a;AC=1;AF=0.56;AFR_AF=0.60;AMR_AF=0.60;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.35;LDAF=0.5635;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150067675 rs10872646 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.57;AMR_AF=0.60;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5553;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150184882 rs9322225 G C 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.81;AVGPOST=0.9521;ERATE=0.0041;EUR_AF=0.41;LDAF=0.5085;RSQ=0.9345;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +6 150209717 rs2342767 C G 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.43;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.5512;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150209828 rs2342768 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.75;AVGPOST=0.9790;ERATE=0.0301;EUR_AF=0.38;LDAF=0.4844;RSQ=0.9671;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150210681 rs9371533 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.81;AMR_AF=0.55;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.42;LDAF=0.6472;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150210685 rs9383921 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.20;AMR_AF=0.49;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150210723 rs6925151 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.26;LDAF=0.3222;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150210802 rs6933882 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.43;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.5511;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150210994 rs6939761 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.43;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.5512;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150210999 rs3823021 G C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.43;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.5512;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150211100 rs3798763 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.05;AMR_AF=0.36;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2468;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150211123 rs2151910 A T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8478;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 150239484 rs4870111 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0302;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150263186 rs4343924 A C 100 PASS AA=-;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9824;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +6 150263333 rs17079087 G A 100 PASS AA=-;AC=1;AF=0.16;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.03;LDAF=0.1603;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.85 +6 150263339 rs78097417 A G 100 PASS AA=-;AC=1;AF=0.16;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.03;LDAF=0.1602;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-2.46,-0.00,-4.40 +6 150267478 rs7764321 T C 100 PASS AA=-;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.34;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.03;LDAF=0.1338;RSQ=0.9879;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.17,-0.49 +6 150267527 rs2282235 A C 100 PASS AA=-;AC=1;AF=0.60;AFR_AF=0.70;AMR_AF=0.49;AN=2;ASN_AF=0.72;AVGPOST=0.9452;ERATE=0.0465;EUR_AF=0.49;LDAF=0.5930;RSQ=0.9085;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 150268533 rs146872141 A C 100 PASS AA=-;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.35;AVGPOST=0.9938;ERATE=0.0005;EUR_AF=0.03;LDAF=0.1285;RSQ=0.9805;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.86,-0.45,-0.19 +6 150285302 rs74844020 G A 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.03;LDAF=0.1330;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 150342006 rs200932472 T A 100 PASS AA=t;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9917;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0341;RSQ=0.9112;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.800:-0.10,-0.68,-4.70 +6 150342012 rs200010395 A G 100 PASS AA=N;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9905;ERATE=0.0018;EUR_AF=0.01;LDAF=0.0321;RSQ=0.8919;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:0.800:-0.18,-0.47,-2.40 +6 150343211 rs202055124 A G 100 PASS AA=N;AC=1;AF=0.64;AFR_AF=0.66;AMR_AF=0.79;AN=2;ASN_AF=0.38;AVGPOST=0.9095;ERATE=0.0479;EUR_AF=0.74;LDAF=0.6178;RSQ=0.8836;SNPSOURCE=EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:0.950:-0.18,-0.47,-2.43 +6 150346532 rs1543547 T C 100 PASS AA=c;AC=1;AF=0.40;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.21;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.46;LDAF=0.3997;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150385730 rs912558 T G 100 PASS AA=T;AC=2;AF=0.36;AFR_AF=0.30;AMR_AF=0.42;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3611;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 150387302 rs669009 A T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=0.70;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8274;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 150387312 rs6935471 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=0.70;AVGPOST=0.9985;ERATE=0.0024;EUR_AF=0.88;LDAF=0.8270;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 150390149 rs72501734 G C 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0286;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +6 150569833 rs113779140 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0087;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 150710447 rs9397944 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.16;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1440;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150719380 rs2076286 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.43;AMR_AF=0.18;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.2180;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 150719404 rs2076285 T C 100 PASS AA=t;AC=1;AF=0.22;AFR_AF=0.43;AMR_AF=0.18;AN=2;ASN_AF=0.29;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.2181;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 151152059 rs2073065 G A 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1308;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151152656 rs803411 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6714;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151161018 rs17348890 A G 100 PASS AA=A;AC=2;AF=0.13;AFR_AF=0.04;AMR_AF=0.23;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1258;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151198895 rs2073064 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.34;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2136;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 151247439 rs803455 A G 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=0.91;AVGPOST=0.9984;ERATE=0.0067;EUR_AF=0.94;LDAF=0.9287;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0272;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151266717 rs803444 G A 100 PASS AA=g;AC=1;AF=0.35;AFR_AF=0.34;AMR_AF=0.27;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3535;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151281567 rs1771798 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.70;AMR_AF=0.92;AN=2;ASN_AF=0.86;AVGPOST=0.9986;ERATE=0.0045;EUR_AF=0.90;LDAF=0.8473;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +6 151358299 rs9478918 T C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=0.93;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9015;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.60 +6 151627034 rs2294792 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.45;LDAF=0.2695;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151627046 rs201662069 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +6 151669875 rs10872670 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.80;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0015;EUR_AF=0.79;LDAF=0.7351;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151670172 rs3734799 A C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.34;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5808;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151670690 rs35341741 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0617;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151670897 rs900654 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.79;AMR_AF=0.77;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7450;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151671182 rs41289369 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0690;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 151672285 rs13212161 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0731;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151672812 rs3734797 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0649;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 151673589 rs12201388 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.12;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0759;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151674270 rs34713284 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151674593 rs3734795 G T 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.33;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1394;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 151726829 rs3757315 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.63;AMR_AF=0.36;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4506;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 151743629 rs6912830 A C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.86;AMR_AF=0.48;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5941;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 151754273 rs6904364 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.43;AMR_AF=0.44;AN=2;ASN_AF=0.68;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4894;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151857594 rs6931664 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.15;AMR_AF=0.50;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.59;LDAF=0.3848;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151859314 rs4870034 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.27;AMR_AF=0.72;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6193;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151894278 rs4242277 G T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9383;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151894505 rs953767 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9390;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 151914421 rs9383930 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.79;AMR_AF=0.46;AN=2;ASN_AF=0.81;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.27;LDAF=0.5594;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 151936677 rs6929137 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.51;AMR_AF=0.27;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3401;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 151939181 rs3734804 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.72;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5023;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152201875 rs4986934 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9816;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 152265522 rs1801132 G C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.93;AMR_AF=0.75;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7390;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 152420095 rs2228480 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9983;ERATE=0.0083;EUR_AF=0.17;LDAF=0.1794;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0206;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152453291 rs35591210 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.05;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0391;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152461061 rs3818110 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.54;AMR_AF=0.54;AN=2;ASN_AF=0.27;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4143;RSQ=0.9990;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152464839 rs2256135 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.80;AMR_AF=0.68;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6630;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152466582 rs2813487 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.46;AMR_AF=0.52;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3698;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152466674 rs2747662 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3364;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152469188 rs2252755 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.44;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3665;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152469331 rs2252748 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3053;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152539350 rs9371243 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2811;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152540278 rs2147377 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9934;RSQ=0.9542;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 152540357 rs17195304 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0701;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152542548 rs9383976 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.28;AMR_AF=0.25;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0020;EUR_AF=0.23;LDAF=0.3280;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152555112 rs2296254 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.38;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2162;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152570274 rs17215781 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0635;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152570415 rs6557210 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.62;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6964;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152621955 rs148405405 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0066;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152630946 rs12662994 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1104;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152647681 rs2306916 A T 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.94;AMR_AF=0.80;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8336;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152652034 rs6911096 A T 100 PASS AA=T;AC=1;AF=0.82;AFR_AF=0.89;AMR_AF=0.80;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8227;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152653037 rs9478314 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.52;AMR_AF=0.55;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4112;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152658142 rs9479297 T C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.95;AMR_AF=0.70;AN=2;ASN_AF=0.86;AVGPOST=0.9989;ERATE=0.0013;EUR_AF=0.75;LDAF=0.8147;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152658191 rs9479298 T C 100 PASS AA=t;AC=1;AF=0.82;AFR_AF=0.94;AMR_AF=0.70;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.76;LDAF=0.8171;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152665261 rs4645434 C A 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.44;AMR_AF=0.61;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5814;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 152673147 rs6908392 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5955;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 152673519 rs6932325 A C 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.55;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5964;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +6 152675854 rs9397102 A G 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.55;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5964;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 152683413 rs4407724 G T 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.60;AMR_AF=0.69;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6910;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 152688567 rs7775637 C T 100 PASS AA=T;AC=1;AF=0.90;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8998;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152690559 rs1873176 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4242;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152694184 rs6913579 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.41;AMR_AF=0.51;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4670;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152697706 rs214955 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.52;AMR_AF=0.50;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5199;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 152765579 rs139524103 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0087;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 152784450 rs143505528 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 153296541 rs2073260 G C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7330;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 153311001 rs3860814 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9997;RSQ=0.0586;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.28,-0.02 +6 153315617 rs3799135 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2034;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 153315695 rs3192723 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2034;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 153316326 rs3734467 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.18;AMR_AF=0.14;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1265;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 153323594 rs3818123 C T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.50;AVGPOST=0.9977;ERATE=0.0015;EUR_AF=0.70;LDAF=0.6560;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 153323709 rs3818125 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.50;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.70;LDAF=0.6581;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.79,-0.08 +6 153323806 rs3818126 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.12;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.16;LDAF=0.2008;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.18,-0.47,-2.45 +6 153365100 rs2295230 A C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.62;AMR_AF=0.38;AN=2;ASN_AF=0.59;AVGPOST=0.9984;ERATE=0.0032;EUR_AF=0.29;LDAF=0.4552;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 154360797 rs1799971 A G 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.38;AVGPOST=0.9903;ERATE=0.0010;EUR_AF=0.16;LDAF=0.1892;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 154414375 rs9282821 A C 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.81;AVGPOST=0.9785;ERATE=0.0248;EUR_AF=0.63;LDAF=0.6303;RSQ=0.9704;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 154414446 rs540825 A T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.97;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8733;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 154414563 rs675026 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.73;AMR_AF=0.74;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7579;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 154414573 rs562859 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.59;AMR_AF=0.73;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7234;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 154763401 rs6557351 G A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.57;AMR_AF=0.31;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3321;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 154771277 rs9322467 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.74;AN=2;ASN_AF=0.92;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7802;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 155131392 rs138152831 A C 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0007;RSQ=0.8291;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 155152311 rs911191 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.09;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.54;LDAF=0.3230;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155451352 rs931312 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.16;LDAF=0.2021;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 155485535 rs1032140 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.39;AMR_AF=0.74;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5690;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 155485554 rs1032141 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.39;AMR_AF=0.74;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5740;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 155561760 rs4259257 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9793;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 155561796 rs11751128 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.0035;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1297;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 155565744 rs6907595 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.31;AMR_AF=0.27;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0014;EUR_AF=0.43;LDAF=0.2710;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 155571113 rs3011902 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 155574198 rs2989458 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.27;AMR_AF=0.27;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2468;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 155574207 rs2274824 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.73;AMR_AF=0.54;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5992;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 155575546 rs1331213 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.27;AN=2;ASN_AF=0.02;AVGPOST=0.9994;ERATE=0.0019;EUR_AF=0.40;LDAF=0.2517;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 155575607 rs3011895 G A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2631;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 155577823 rs1571766 C T 100 PASS AA=c;AC=1;AF=0.75;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7459;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155579246 rs3734322 A C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.98;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7368;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155596901 rs927718 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7454;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155597147 rs1555774 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.24;AMR_AF=0.46;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3948;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155606325 rs324356 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.69;AMR_AF=0.67;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6650;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155635585 rs162981 A C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.71;AMR_AF=0.71;AN=2;ASN_AF=0.84;AVGPOST=0.9976;ERATE=0.0031;EUR_AF=0.60;LDAF=0.7062;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155750035 rs231954 C T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.73;AMR_AF=0.62;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7075;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155750219 rs231955 G A 100 PASS AA=A;AC=1;AF=0.90;AFR_AF=0.95;AMR_AF=0.84;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9019;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 155761246 rs3749930 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1966;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 157963743 rs2365611 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.34;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3921;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 158294184 rs9355424 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0786;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 158327269 rs9365567 T C 100 PASS AA=T;AC=2;AF=0.22;AFR_AF=0.33;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2207;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +6 158330765 rs3211067 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.24;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2020;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 158359815 rs6922592 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.25;AMR_AF=0.13;AN=2;ASN_AF=0.11;AVGPOST=0.9931;ERATE=0.0244;EUR_AF=0.22;LDAF=0.1820;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 158361899 rs912879 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.98;AMR_AF=0.68;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.73;LDAF=0.8053;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 158497717 rs2296508 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.80;AMR_AF=0.40;AN=2;ASN_AF=0.55;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.53;LDAF=0.5730;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 158499302 rs2296507 G T 100 PASS AA=g;AC=1;AF=0.55;AFR_AF=0.71;AMR_AF=0.39;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5494;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 158502137 rs2256014 G T 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.70;AMR_AF=0.39;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5471;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 158502590 rs173263 C A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.95;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.84;LDAF=0.7569;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.10,-0.00 +6 158505088 rs1744173 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.98;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7641;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 158507981 rs2296506 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.60;AMR_AF=0.37;AN=2;ASN_AF=0.56;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.53;LDAF=0.5286;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.21 +6 158509750 rs350289 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.97;AMR_AF=0.65;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7724;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 158517308 rs2502601 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.63;AMR_AF=0.38;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5251;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 158569886 rs9356399 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 158571501 rs6929274 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.72;AMR_AF=0.78;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7312;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 158571655 rs6929520 G C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.72;AMR_AF=0.78;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7313;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 158735087 rs9364951 C T 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.71;AMR_AF=0.92;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8597;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 158735090 rs7756620 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.71;AMR_AF=0.92;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8597;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 158870081 rs705956 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.79;AMR_AF=0.57;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 158873293 rs41266333 G A 100 PASS AA=G;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.0023;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 158923434 rs9364968 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.88;AVGPOST=0.9962;ERATE=0.0145;EUR_AF=0.76;LDAF=0.8241;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 158924088 rs914690 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9994;RSQ=0.8338;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 158924595 rs3749853 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9953;ERATE=0.0273;EUR_AF=0.17;LDAF=0.1593;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 158927651 rs3828712 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.49;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3998;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 158994577 rs4709217 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9941;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.72,-0.00 +6 159029342 rs6925091 G C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.43;AMR_AF=0.49;AN=2;ASN_AF=0.57;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4597;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159050889 rs2278612 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.24;AMR_AF=0.34;AN=2;ASN_AF=0.63;AVGPOST=0.9880;ERATE=0.0077;EUR_AF=0.25;LDAF=0.3603;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159065758 rs2306751 C G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.79;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=0.57;LDAF=0.6733;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159166486 rs6914168 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.47;AMR_AF=0.21;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2532;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159184462 rs2291387 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.93;AMR_AF=0.55;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0019;EUR_AF=0.80;LDAF=0.6357;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 159185563 rs3123101 T A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.62;AMR_AF=0.51;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5334;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 159188128 rs2242318 A G 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.56;AMR_AF=0.50;AN=2;ASN_AF=0.18;AVGPOST=0.9949;ERATE=0.0059;EUR_AF=0.75;LDAF=0.5160;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 159188282 rs9364994 T G 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1133;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159188549 rs3212310 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.12;AMR_AF=0.08;AN=2;AVGPOST=0.9998;ERATE=0.0034;EUR_AF=0.14;LDAF=0.0882;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159190800 rs3127177 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.24;AMR_AF=0.18;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1842;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159191788 rs3212308 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.29;AMR_AF=0.32;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3268;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159205632 rs9364995 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.29;AMR_AF=0.32;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3287;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159205668 rs3103003 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.42;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4218;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159210283 rs56194802 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.14;AMR_AF=0.08;AN=2;AVGPOST=0.9988;ERATE=0.0019;EUR_AF=0.15;LDAF=0.0975;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159398633 rs3756988 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159398700 rs3756987 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159398764 rs12191022 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.26;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1956;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159399348 rs768994 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.26;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1927;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159404862 rs2143651 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2144;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159407446 rs34582178 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159414843 rs16889317 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.26;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1947;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159414899 rs16889320 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.26;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1956;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159420574 rs10945587 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.44;AMR_AF=0.34;AN=2;ASN_AF=0.43;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.13;LDAF=0.3126;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159456842 rs2235822 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1658;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159652931 rs420137 G C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.74;AMR_AF=0.89;AN=2;ASN_AF=0.63;AVGPOST=0.9979;ERATE=0.0011;EUR_AF=0.92;LDAF=0.7983;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 159653635 rs381639 C G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.32;AMR_AF=0.69;AN=2;ASN_AF=0.26;AVGPOST=0.9953;ERATE=0.0010;EUR_AF=0.79;LDAF=0.5286;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +6 159654487 rs404435 G T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=0.64;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8031;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +6 159654551 rs370434 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=0.64;AVGPOST=0.9961;ERATE=0.0009;EUR_AF=0.92;LDAF=0.8007;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +6 159654994 rs402388 A C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=0.64;AVGPOST=0.9952;ERATE=0.0008;EUR_AF=0.92;LDAF=0.8015;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.55,-0.01 +6 159655084 rs420054 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.88;AN=2;ASN_AF=0.63;AVGPOST=0.9860;ERATE=0.0028;EUR_AF=0.92;LDAF=0.7956;RSQ=0.9692;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 159655102 rs436743 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=0.64;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8023;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 159655326 rs3003174 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=0.64;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.92;LDAF=0.8025;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.13,-0.00 +6 159655383 rs2501176 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.88;AN=2;ASN_AF=0.64;AVGPOST=0.9958;ERATE=0.0008;EUR_AF=0.92;LDAF=0.8009;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 159655402 rs2932988 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=0.64;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8027;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 159655516 rs77131924 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0567;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159672455 rs294899 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.20;AMR_AF=0.67;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.72;LDAF=0.4822;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159682206 rs294883 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.50;AMR_AF=0.72;AN=2;ASN_AF=0.64;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6617;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 159689004 rs560889 C G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.62;AMR_AF=0.28;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3689;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 159692321 rs409691 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.38;AMR_AF=0.72;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.75;LDAF=0.6323;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160106088 rs2758332 C A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.49;AMR_AF=0.55;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3879;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160113872 rs4880 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.11;AVGPOST=0.9991;ERATE=0.0010;EUR_AF=0.46;LDAF=0.3715;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160114168 rs5746094 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.18;AMR_AF=0.26;AN=2;ASN_AF=0.41;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2867;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.43 +6 160169258 rs7766006 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2590;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 160174456 rs1440 T G 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.20;AMR_AF=0.60;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3761;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160196343 rs25683 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.17;AMR_AF=0.57;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3657;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160198359 rs3464 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2606;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 160198395 rs3465 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.33;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2432;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160199687 rs15982 T C 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.54;AMR_AF=0.82;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6709;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160202167 rs2295899 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.27;AMR_AF=0.59;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3898;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160207049 rs2273828 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.17;AMR_AF=0.57;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3638;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.16 +6 160211636 rs1128670 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.50;AMR_AF=0.81;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6618;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160211697 rs9346795 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2902;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 160211700 rs9355278 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2747;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 160224346 rs2146163 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.87;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.80;LDAF=0.7386;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160225012 rs35435543 T G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.24;AMR_AF=0.56;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3674;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160225559 rs9364536 G C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.87;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7377;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 160229889 rs35872675 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.17;AMR_AF=0.55;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3489;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160234625 rs13220869 G C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.57;AMR_AF=0.65;AN=2;ASN_AF=0.54;AVGPOST=0.9987;ERATE=0.0212;EUR_AF=0.58;LDAF=0.5762;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160241440 rs7775650 G C 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1161;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 160328620 rs220721 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.30;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3807;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 160453561 rs4709390 T G 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160453978 rs1570070 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.22;AMR_AF=0.31;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4278;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160464289 rs894817 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.23;AMR_AF=0.31;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.33;LDAF=0.4210;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 160494409 rs629849 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.88;LDAF=0.9024;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160505199 rs614754 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9949;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160551204 rs683369 G C 100 PASS AA=c;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.89;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8706;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160560845 rs628031 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.76;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6976;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160575985 rs2297374 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.53;AMR_AF=0.30;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3853;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 160645832 rs316003 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.48;AMR_AF=0.83;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7314;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160670282 rs316019 A C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8780;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160677614 rs2774230 G C 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.48;AMR_AF=0.82;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7427;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160679400 rs624249 C A 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.24;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=0.9942;ERATE=0.0083;EUR_AF=0.42;LDAF=0.2949;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 160769423 rs555754 G A 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=0.9856;ERATE=0.0012;EUR_AF=0.48;LDAF=0.4364;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.85,-0.07 +6 160769811 rs668871 C T 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.53;AMR_AF=0.47;AN=2;ASN_AF=0.28;AVGPOST=0.9880;ERATE=0.0018;EUR_AF=0.49;LDAF=0.4401;RSQ=0.9812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.96,-0.05 +6 160868701 rs2457574 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.43;AMR_AF=0.36;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4452;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 161085295 rs1853021 A G 100 PASS AA=g;AC=2;AF=0.81;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.74;AVGPOST=0.9649;ERATE=0.0402;EUR_AF=0.77;LDAF=0.8041;RSQ=0.9296;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.65,-0.01 +6 161123413 rs2314851 G T 100 PASS AA=.;AC=2;AF=0.30;AFR_AF=0.28;AMR_AF=0.37;AN=2;ASN_AF=0.16;AVGPOST=0.9451;ERATE=0.0143;EUR_AF=0.39;LDAF=0.3013;RSQ=0.9057;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-1.10,-0.04 +6 161132146 rs4757 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.49;AMR_AF=0.25;AN=2;AVGPOST=0.9977;ERATE=0.0008;EUR_AF=0.29;LDAF=0.2511;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 161137663 rs4252109 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1581;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 161139857 rs13231 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.20;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1582;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 161143608 rs4252120 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.14;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1618;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 161152240 rs4252125 G A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.14;AMR_AF=0.20;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1618;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 161152294 rs4252126 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.07;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1444;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 161160083 rs2859879 G A 100 PASS AA=.;AC=1;AF=0.63;AFR_AF=0.78;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6270;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 161469774 rs4559074 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 161502094 rs9347479 C T 100 PASS AA=c;AC=2;AF=0.86;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.99;AVGPOST=0.9893;ERATE=0.0067;EUR_AF=0.73;LDAF=0.8545;RSQ=0.9686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 161509003 rs9355332 T A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9392;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 161557662 rs3734462 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1689;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 161557703 rs6455706 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 161990339 rs10945756 G A 100 PASS AA=G;AC=2;AF=0.15;AFR_AF=0.18;AMR_AF=0.20;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1491;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 161990483 rs3765474 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.54;AMR_AF=0.45;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5776;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 162622304 rs4709583 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9502;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 165801790 rs1511746 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.41;AMR_AF=0.14;AN=2;AVGPOST=0.9997;ERATE=0.0013;EUR_AF=0.15;LDAF=0.1663;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 165806114 rs220794 A C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.37;AMR_AF=0.18;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1883;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 165808630 rs491522 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.41;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1641;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 165808634 rs491517 A T 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.41;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1641;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 165827194 rs63201662 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.89;AMR_AF=0.65;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.64;LDAF=0.6351;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +6 165832227 rs220740 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2249;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 166579270 rs2305089 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.24;AMR_AF=0.53;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3912;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 166580188 rs1056048 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.35;AMR_AF=0.24;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2057;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 166720806 rs911203 G C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.87;AMR_AF=0.62;AN=2;ASN_AF=0.92;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7954;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.04 +6 166721211 rs13204594 G T 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.75;AMR_AF=0.60;AN=2;ASN_AF=0.92;AVGPOST=0.9856;ERATE=0.0032;EUR_AF=0.74;LDAF=0.7601;RSQ=0.9726;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 166721224 rs7757150 C G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.88;AMR_AF=0.62;AN=2;ASN_AF=0.92;AVGPOST=0.9962;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7961;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.49 +6 166736362 rs7088 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.34;AMR_AF=0.47;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4523;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 166737980 rs4710041 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8691;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 166739684 rs10806847 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.81;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0048;EUR_AF=0.76;LDAF=0.8225;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 166743760 rs9348119 G C 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.25;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4803;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 166755975 rs10862 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.80;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9951;ERATE=0.0008;EUR_AF=0.76;LDAF=0.8152;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.72,-0.09 +6 166755979 rs11168 A C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.80;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.76;LDAF=0.8158;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.78,-0.08 +6 166826255 rs909631 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.36;AMR_AF=0.65;AN=2;ASN_AF=0.74;AVGPOST=0.9960;ERATE=0.0021;EUR_AF=0.64;LDAF=0.6077;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 166826304 rs760670 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.86;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.66;LDAF=0.7567;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 166827436 rs2235295 T C 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.65;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0020;EUR_AF=0.65;LDAF=0.6979;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 166952264 rs1003857 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.58;AMR_AF=0.82;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7840;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 167271711 rs943687 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9378;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 167271716 rs9347162 T C 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.13;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6401;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 167347673 rs41269597 G C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.22;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1239;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 167413539 rs12212247 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3017;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 167424293 rs1322077 T C 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.24;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=0.9968;ERATE=0.0014;EUR_AF=0.42;LDAF=0.3349;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 167436159 rs3752520 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3050;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 167440128 rs2282861 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.33;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4168;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +6 167446172 rs185255545 T C 100 PASS AA=T;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 167550042 rs2071171 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.43;AMR_AF=0.68;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0026;EUR_AF=0.60;LDAF=0.5540;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 167571048 rs6902566 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9906;RSQ=0.9562;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 167590541 rs3737098 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.47;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=0.9369;ERATE=0.0483;EUR_AF=0.68;LDAF=0.6238;RSQ=0.8518;SNPSOURCE=LOWCOV,EXOME;THETA=0.0207;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.63,-0.12 +6 167704944 rs2076005 T G 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.60;AMR_AF=0.56;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5901;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 167719436 rs2072767 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.24;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0009;EUR_AF=0.27;LDAF=0.2701;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 167728774 rs663606 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.72;AVGPOST=0.9764;ERATE=0.0378;EUR_AF=0.52;LDAF=0.6364;RSQ=0.9679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 167754661 rs909545 A G 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8430;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 167787862 rs79258919 C A 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9064;ERATE=0.0647;EUR_AF=0.22;LDAF=0.2342;RSQ=0.7903;SNPSOURCE=EXOME;THETA=0.0084;VT=SNP GT:DS:GL 0|1:1.000:-1.97,-0.00,-3.49 +6 167789615 rs58620632 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9195;ERATE=0.0212;EUR_AF=0.41;LDAF=0.4382;RSQ=0.8561;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.98,-0.00 +6 167791530 rs17855837 G C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.56;AMR_AF=0.33;AN=2;ASN_AF=0.41;AVGPOST=0.8549;ERATE=0.0119;EUR_AF=0.39;LDAF=0.4194;RSQ=0.7918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0211;VT=SNP GT:DS:GL 1|0:1.000:-2.58,-0.27,-0.33 +6 167791549 rs3010594 T G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.53;AMR_AF=0.33;AN=2;ASN_AF=0.40;AVGPOST=0.8469;ERATE=0.0044;EUR_AF=0.41;LDAF=0.4181;RSQ=0.7826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0369;VT=SNP GT:DS:GL 1|0:0.950:-0.48,-0.48,-0.48 +6 167794572 rs150504525 C T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9434;ERATE=0.0010;EUR_AF=0.12;LDAF=0.1490;RSQ=0.8287;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.900:-0.48,-0.48,-0.48 +6 168298875 rs9346511 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3584;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 168315978 rs3213590 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1508;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 168316118 rs3213591 T G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.61;AMR_AF=0.56;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.42;LDAF=0.5817;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 168317816 rs6906754 A C 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1526;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 168323664 rs2301533 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.34;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3537;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 168325803 rs2301534 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1513;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 168343838 rs1132306 T C 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.37;AMR_AF=0.55;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5256;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 168349011 rs9364371 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2320;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 168349206 rs12665666 C A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.19;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=0.11;LDAF=0.1650;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 168442687 rs12197062 A C 100 PASS AA=A;AC=2;AF=0.11;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.19;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1090;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.43,-0.00 +6 168457801 rs3734898 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.86;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.90;LDAF=0.8647;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.59,-0.13 +6 168457966 rs3734899 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.13;AMR_AF=0.38;AN=2;ASN_AF=0.47;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3886;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 168459790 rs1465182 G T 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.22;AMR_AF=0.47;AN=2;ASN_AF=0.53;AVGPOST=0.9955;ERATE=0.0009;EUR_AF=0.60;LDAF=0.4735;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.45,-0.02 +6 168459792 rs2269680 G A 100 PASS AA=c;AC=1;AF=0.41;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.48;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4053;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.41,-0.02,-5.00 +6 168459845 rs1548349 G C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=0.9986;ERATE=0.0007;EUR_AF=0.90;LDAF=0.8714;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +6 168463624 rs902393 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.05;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0650;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 168479568 rs78152017 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.08;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0960;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 168479604 rs34054991 G A 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.86;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.87;LDAF=0.8419;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 168479790 rs11750985 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.86;AMR_AF=0.75;AN=2;ASN_AF=0.85;AVGPOST=0.9986;ERATE=0.0009;EUR_AF=0.87;LDAF=0.8414;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.10,-0.00 +6 168479809 rs41266315 G A 100 PASS AA=g;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.08;AN=2;ASN_AF=0.14;AVGPOST=0.9994;ERATE=0.0012;EUR_AF=0.08;LDAF=0.1002;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.87 +6 169620247 rs9393165 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.88;AMR_AF=0.71;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6617;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 169622263 rs6605530 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2010;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 169629783 rs6422747 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.95;AMR_AF=0.66;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6705;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 169634809 rs9393156 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.37;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3511;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 169635010 rs9406328 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.37;AN=2;ASN_AF=0.51;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3508;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 169637456 rs9283850 G A 100 PASS AA=a;AC=2;AF=0.69;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0013;EUR_AF=0.53;LDAF=0.6942;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 169637469 rs73043889 G T 100 PASS AA=g;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 169637911 rs9766678 G A 100 PASS AA=a;AC=2;AF=0.71;AFR_AF=0.74;AMR_AF=0.67;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7061;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +6 169646409 rs73046010 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 169648767 rs12178180 G A 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1543;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 170033086 rs9396946 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.57;AVGPOST=0.9986;ERATE=0.0002;EUR_AF=0.05;LDAF=0.2235;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170049421 rs4145868 T G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.98;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.36;LDAF=0.6559;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170059627 rs3823464 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.25;AMR_AF=0.36;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3368;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170068180 rs3823465 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3344;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170070723 rs4236176 A G 100 PASS AA=a;AC=1;AF=0.52;AFR_AF=0.41;AMR_AF=0.49;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.30;LDAF=0.5181;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170159023 rs6459660 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.90;AMR_AF=0.66;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.7322;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170592293 rs2295205 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.11;AVGPOST=0.9926;ERATE=0.0028;EUR_AF=0.27;LDAF=0.1792;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 170592945 rs3734776 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.05;AN=2;ASN_AF=0.61;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1947;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170594819 rs2255020 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9780;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 170595430 rs2747757 G C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.67;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9033;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +6 170597305 rs3818115 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.05;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1892;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170627651 rs9460113 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.56;AMR_AF=0.59;AN=2;ASN_AF=0.10;AVGPOST=0.9963;ERATE=0.0004;EUR_AF=0.66;LDAF=0.4790;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 170858045 rs2076319 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.77;AMR_AF=0.56;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6490;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170862300 rs12717 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.29;AMR_AF=0.42;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4799;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170878793 rs1042327 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.67;AMR_AF=0.54;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.51;LDAF=0.6267;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170878886 rs2235506 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1747;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +6 170892100 rs9295417 T C 100 PASS AA=.;AC=1;AF=0.61;AFR_AF=0.62;AMR_AF=0.54;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6147;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170892848 rs4140615 A G 100 PASS AA=.;AC=1;AF=0.63;AFR_AF=0.67;AMR_AF=0.54;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6257;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +6 170893364 rs4140616 C T 100 PASS AA=.;AC=1;AF=0.50;AFR_AF=0.37;AMR_AF=0.44;AN=2;ASN_AF=0.78;AVGPOST=0.9818;ERATE=0.0049;EUR_AF=0.40;LDAF=0.4960;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.84 +5 163260 rs29674 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.87;AVGPOST=0.9840;ERATE=0.0027;EUR_AF=0.99;LDAF=0.9544;RSQ=0.8653;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.04,-0.00 +5 163266 rs3810867 C G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.41;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9579;ERATE=0.0280;EUR_AF=0.35;LDAF=0.3175;RSQ=0.9305;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 171569 rs4956981 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.58;AMR_AF=0.58;AN=2;ASN_AF=0.28;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5319;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 172971 rs6868964 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.53;LDAF=0.4398;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 173200 rs6885136 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.45;AMR_AF=0.46;AN=2;ASN_AF=0.28;AVGPOST=0.9990;ERATE=0.0035;EUR_AF=0.53;LDAF=0.4364;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 174106 rs4956987 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3277;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 174240 rs6875054 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.46;AMR_AF=0.52;AN=2;ASN_AF=0.25;AVGPOST=0.9682;ERATE=0.0004;EUR_AF=0.58;LDAF=0.4526;RSQ=0.9598;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +5 174241 rs6890914 C A 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.46;AMR_AF=0.52;AN=2;ASN_AF=0.25;AVGPOST=0.9693;ERATE=0.0005;EUR_AF=0.58;LDAF=0.4536;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +5 181660 rs7717970 T G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.27;AMR_AF=0.50;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0019;EUR_AF=0.63;LDAF=0.4307;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 181730 rs12519352 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.08;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3229;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 181762 rs11133847 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.63;LDAF=0.4275;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 182077 rs4956924 T A 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3426;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 195507 rs13167067 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.19;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9949;ERATE=0.0005;EUR_AF=0.54;LDAF=0.3708;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 230980 rs2288461 A G 100 PASS AA=-;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=0.69;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.88;LDAF=0.8549;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 231111 rs1126417 T C 100 PASS AA=-;AC=1;AF=0.63;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.33;AVGPOST=0.9939;ERATE=0.0006;EUR_AF=0.75;LDAF=0.6261;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 256472 rs6961 G A 100 PASS AA=N;AC=1;AF=0.34;AFR_AF=0.58;AMR_AF=0.32;AN=2;ASN_AF=0.33;AVGPOST=0.9809;ERATE=0.0383;EUR_AF=0.20;LDAF=0.3408;RSQ=0.9640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 311478 rs2244029 T C 100 PASS AA=N;AC=1;AF=0.58;AFR_AF=0.73;AMR_AF=0.60;AN=2;ASN_AF=0.27;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.71;LDAF=0.5777;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 354051 rs2013782 T C 100 PASS AA=N;AC=2;AF=0.49;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.31;AVGPOST=0.9976;ERATE=0.0017;EUR_AF=0.61;LDAF=0.4878;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 413594 rs2261659 G C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.51;AMR_AF=0.42;AN=2;ASN_AF=0.10;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3659;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 422955 rs2292596 C G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3080;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 433952 rs2672724 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.66;AMR_AF=0.34;AN=2;ASN_AF=0.37;AVGPOST=0.9938;ERATE=0.0018;EUR_AF=0.36;LDAF=0.4279;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +5 434981 rs2672725 G C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.82;AMR_AF=0.81;AN=2;ASN_AF=0.54;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.86;LDAF=0.7590;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.02 +5 442571 rs56146525 A C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.01;AMR_AF=0.27;AN=2;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.40;LDAF=0.1886;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 442933 rs79112167 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.14;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0367;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 474974 rs2721018 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.66;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=0.9913;ERATE=0.0012;EUR_AF=0.35;LDAF=0.4375;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.60,-0.00,-3.44 +5 475104 rs2247114 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.85;AMR_AF=0.75;AN=2;ASN_AF=0.51;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.85;LDAF=0.7449;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +5 475626 rs41282625 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.01;AMR_AF=0.26;AN=2;AVGPOST=0.9953;ERATE=0.0004;EUR_AF=0.40;LDAF=0.1854;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.95,-0.05 +5 476353 rs2230437 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.42;LDAF=0.2445;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 476530 rs2244240 C G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.79;AMR_AF=0.73;AN=2;ASN_AF=0.48;AVGPOST=0.9662;ERATE=0.0155;EUR_AF=0.80;LDAF=0.6989;RSQ=0.9426;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 479905 rs890986 A C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7855;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +5 482186 rs9885312 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.98;AMR_AF=0.82;AN=2;ASN_AF=0.53;AVGPOST=0.9921;ERATE=0.0036;EUR_AF=0.88;LDAF=0.7995;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +5 482653 rs3777230 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.92;AMR_AF=0.83;AN=2;ASN_AF=0.55;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7909;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 483564 rs56098739 A G 100 PASS AA=a;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.24;AN=2;AVGPOST=0.9984;ERATE=0.0037;EUR_AF=0.28;LDAF=0.1404;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 485259 rs55989315 G T 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=0.9988;ERATE=0.0021;EUR_AF=0.28;LDAF=0.1405;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 633915 rs62001013 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0265;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 635709 rs1697985 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.32;AMR_AF=0.25;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3035;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 640705 rs868649 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.24;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2832;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 665280 rs1697963 T C 100 PASS AA=t;AC=2;AF=0.70;AFR_AF=0.92;AMR_AF=0.70;AN=2;ASN_AF=0.63;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7025;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 678062 rs450628 A G 100 PASS AA=g;AC=2;AF=0.71;AFR_AF=0.96;AMR_AF=0.70;AN=2;ASN_AF=0.61;AVGPOST=0.9967;ERATE=0.0007;EUR_AF=0.64;LDAF=0.7152;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +5 833915 rs605088 G T 100 PASS AA=t;AC=1;AF=0.24;AFR_AF=0.27;AMR_AF=0.23;AN=2;ASN_AF=0.25;AVGPOST=0.8711;ERATE=0.0438;EUR_AF=0.20;LDAF=0.2789;RSQ=0.6488;SNPSOURCE=EXOME;THETA=0.0085;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.02,-1.32 +5 843696 rs143771442 G T 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.34;AMR_AF=0.07;AN=2;ASN_AF=0.07;AVGPOST=0.9345;ERATE=0.0013;EUR_AF=0.09;LDAF=0.1509;RSQ=0.7937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-1.35,-0.38,-0.27 +5 843723 rs3863148 C A 100 PASS AA=t;AC=1;AF=0.28;AFR_AF=0.43;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9144;ERATE=0.0187;EUR_AF=0.25;LDAF=0.2936;RSQ=0.7826;SNPSOURCE=EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.300:-0.48,-0.48,-0.48 +5 1035482 rs12657514 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9408;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +5 1035602 rs73026754 T C 100 PASS AA=t;AC=1;AF=0.15;AFR_AF=0.24;AMR_AF=0.11;AN=2;ASN_AF=0.23;AVGPOST=0.9988;ERATE=0.0016;EUR_AF=0.06;LDAF=0.1547;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.11,-0.67 +5 1036324 rs73026756 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.07;AMR_AF=0.04;AN=2;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0358;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1036435 rs73026757 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.07;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0352;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1053440 rs79151625 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0325;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1057571 rs75296832 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0101;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1057615 rs2241606 A G 100 PASS AA=a;AC=1;AF=0.52;AFR_AF=0.26;AMR_AF=0.64;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.66;LDAF=0.5220;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1057782 rs12108965 T C 100 PASS AA=t;AC=1;AF=0.94;AFR_AF=0.75;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9400;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1065399 rs737154 C T 100 PASS AA=c;AC=1;AF=0.56;AFR_AF=0.51;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5564;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1076361 rs41280371 C T 100 PASS AA=c;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0412;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1078898 rs4975564 A G 100 PASS AA=N;AC=1;AF=0.80;AFR_AF=0.35;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=0.9976;ERATE=0.0025;EUR_AF=0.92;LDAF=0.7987;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1081767 rs4526148 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.28;AMR_AF=0.61;AN=2;ASN_AF=0.68;AVGPOST=0.9980;ERATE=0.0016;EUR_AF=0.51;LDAF=0.5190;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1212647 rs13180809 C T 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=0.9945;ERATE=0.0006;EUR_AF=0.50;LDAF=0.3390;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 1216775 rs4975629 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.87;AMR_AF=0.89;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8605;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1225564 rs7728646 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.82;AMR_AF=0.76;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7404;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +5 1225613 rs7704058 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.84;AMR_AF=0.77;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7454;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1225626 rs7728667 T A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.84;AMR_AF=0.77;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7450;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1225687 rs7705355 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.68;AMR_AF=0.78;AN=2;ASN_AF=0.55;AVGPOST=0.9838;ERATE=0.0251;EUR_AF=0.79;LDAF=0.7007;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1225688 rs7728814 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.58;AMR_AF=0.66;AN=2;ASN_AF=0.50;AVGPOST=0.9831;ERATE=0.0242;EUR_AF=0.63;LDAF=0.5872;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1225703 rs7724858 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.89;AMR_AF=0.88;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8460;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1225801 rs7704363 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3996;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1232491 rs4975623 G C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=0.64;AVGPOST=0.9961;ERATE=0.0005;EUR_AF=0.91;LDAF=0.8393;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.92,-0.00 +5 1240757 rs7447815 C G 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.38;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3398;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1243009 rs7721679 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9942;ERATE=0.0006;EUR_AF=0.85;LDAF=0.9254;RSQ=0.9689;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1244286 rs7448994 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.88;AMR_AF=0.64;AN=2;ASN_AF=0.23;AVGPOST=0.9097;ERATE=0.0214;EUR_AF=0.71;LDAF=0.5925;RSQ=0.8947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +5 1244425 rs4073918 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.91;AMR_AF=0.73;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6659;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 1320722 rs402710 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.47;AMR_AF=0.33;AN=2;ASN_AF=0.29;AVGPOST=0.9882;ERATE=0.0070;EUR_AF=0.36;LDAF=0.3610;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.11,-0.64,-4.22 +5 1338078 rs113203740 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0109;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 1344458 rs31490 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.52;AMR_AF=0.33;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.46;LDAF=0.3740;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1394815 rs1042098 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.46;AMR_AF=0.28;AN=2;ASN_AF=0.10;AVGPOST=0.9987;ERATE=0.0033;EUR_AF=0.30;LDAF=0.2809;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0109;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1409127 rs429699 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=1.00;AMR_AF=0.89;AN=2;ASN_AF=0.74;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9122;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +5 1442987 rs2270913 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.22;AMR_AF=0.06;AN=2;ASN_AF=0.12;AVGPOST=0.9965;ERATE=0.0008;EUR_AF=0.02;LDAF=0.0975;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1443163 rs6346 C A 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.17;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0017;EUR_AF=0.0013;LDAF=0.0422;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 1470900 rs2277005 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.14;AMR_AF=0.39;AN=2;ASN_AF=0.23;AVGPOST=0.9986;ERATE=0.0008;EUR_AF=0.42;LDAF=0.3030;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1494909 rs3733796 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.20;AN=2;ASN_AF=0.45;AVGPOST=0.9989;ERATE=0.0049;EUR_AF=0.19;LDAF=0.2693;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 1501542 rs1979397 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.51;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2433;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 1801689 rs2242412 A C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.76;AMR_AF=0.90;AN=2;ASN_AF=0.47;AVGPOST=0.9815;ERATE=0.0022;EUR_AF=0.92;LDAF=0.7619;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.30,-0.02 +5 1815950 rs10058270 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.34;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0933;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 1880865 rs4975753 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.35;AMR_AF=0.29;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.23;LDAF=0.2865;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 1881916 rs2307118 A C 100 PASS AA=N;AC=1;AF=0.28;AFR_AF=0.34;AMR_AF=0.29;AN=2;ASN_AF=0.31;AVGPOST=0.9945;ERATE=0.0014;EUR_AF=0.22;LDAF=0.2841;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.44 +5 1882129 rs2232374 T G 100 PASS AA=N;AC=1;AF=0.27;AFR_AF=0.27;AMR_AF=0.30;AN=2;ASN_AF=0.31;AVGPOST=0.9883;ERATE=0.0007;EUR_AF=0.22;LDAF=0.2657;RSQ=0.9760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.59,-0.51,-0.16 +5 2755191 rs76652220 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.18;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1314;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 3600334 rs844154 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.90;AMR_AF=0.91;AN=2;ASN_AF=0.76;AVGPOST=0.9937;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8711;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.04,-0.00 +5 5146223 rs1871468 G C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.72;AMR_AF=0.89;AN=2;ASN_AF=0.65;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.84;LDAF=0.7711;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 5146335 rs2086310 C G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6889;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 5146377 rs1019747 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.63;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.40;LDAF=0.5090;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 5200281 rs6555335 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.57;AMR_AF=0.79;AN=2;ASN_AF=0.84;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7353;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 5209210 rs16875054 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.14;AVGPOST=0.9961;ERATE=0.0005;EUR_AF=0.04;LDAF=0.0705;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 5235096 rs2913631 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.57;AMR_AF=0.83;AN=2;ASN_AF=0.82;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7365;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 5447607 rs4702269 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1354;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 5460569 rs2578565 C T 100 PASS AA=t;AC=2;AF=0.70;AFR_AF=0.69;AMR_AF=0.77;AN=2;ASN_AF=0.73;AVGPOST=0.9985;ERATE=0.0011;EUR_AF=0.64;LDAF=0.6982;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 5460619 rs2619844 G C 100 PASS AA=c;AC=2;AF=0.70;AFR_AF=0.70;AMR_AF=0.77;AN=2;ASN_AF=0.73;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.64;LDAF=0.7003;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 5462148 rs2578500 G A 100 PASS AA=a;AC=2;AF=0.69;AFR_AF=0.70;AMR_AF=0.72;AN=2;ASN_AF=0.72;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6888;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 5462607 rs3806873 A G 100 PASS AA=a;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1088;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 5462620 rs3806874 G A 100 PASS AA=g;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1088;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 5462905 rs142087337 C T 100 PASS AA=c;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 5473866 rs2306349 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1353;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 5489383 rs16900247 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.29;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1011;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 6372585 rs9451 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.54;AMR_AF=0.47;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5045;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 6378614 rs7723985 G C 100 PASS AA=a;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9988;RSQ=0.7891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 6600150 rs3822434 G A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0037;EUR_AF=0.15;LDAF=0.1624;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 6602544 rs2303711 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.76;AMR_AF=0.65;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6864;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 6605532 rs2303707 C A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.76;AMR_AF=0.65;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6846;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 6616791 rs199656511 A C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.70;AMR_AF=0.60;AN=2;ASN_AF=0.64;AVGPOST=0.9723;ERATE=0.0504;EUR_AF=0.61;LDAF=0.6310;RSQ=0.9623;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.37,-0.00,-5.00 +5 6617011 rs6887702 C A 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6778;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 6618186 rs10475338 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.73;AMR_AF=0.65;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6796;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 6620459 rs2288446 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.75;AMR_AF=0.65;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6860;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 6632875 rs10076470 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.31;AMR_AF=0.42;AN=2;ASN_AF=0.15;AVGPOST=0.9984;ERATE=0.0015;EUR_AF=0.38;LDAF=0.3096;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 6632909 rs571550 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.38;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5501;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +5 6633042 rs10062086 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.32;AMR_AF=0.42;AN=2;ASN_AF=0.15;AVGPOST=0.9941;ERATE=0.0005;EUR_AF=0.37;LDAF=0.3123;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.34,-0.01,-2.09 +5 6633779 rs248793 C G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.67;AMR_AF=0.67;AN=2;ASN_AF=0.37;AVGPOST=0.9924;ERATE=0.0015;EUR_AF=0.55;LDAF=0.5504;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.27,-0.02 +5 6651970 rs3822430 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3194;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 6652009 rs8192186 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3199;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 6656210 rs3736316 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 7690754 rs2914289 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.28;AMR_AF=0.54;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3885;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 7695845 rs11134251 C A 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.59;AMR_AF=0.45;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5772;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 7717396 rs6878196 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.39;AMR_AF=0.59;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5910;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.92,-0.00 +5 7757705 rs4072341 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.70;AMR_AF=0.53;AN=2;ASN_AF=0.32;AVGPOST=0.9947;ERATE=0.0051;EUR_AF=0.41;LDAF=0.4706;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.56,-0.14 +5 7757715 rs4479814 C T 100 PASS AA=c;AC=2;AF=0.47;AFR_AF=0.70;AMR_AF=0.53;AN=2;ASN_AF=0.31;AVGPOST=0.9959;ERATE=0.0031;EUR_AF=0.42;LDAF=0.4736;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.00,-0.05 +5 7802363 rs2290910 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2532;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 7866967 rs162030 G C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.94;AMR_AF=0.85;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8122;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 7868030 rs2966952 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.94;AMR_AF=0.85;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8131;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 7869235 rs72716536 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.33;AMR_AF=0.27;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1997;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 7878192 rs161870 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.39;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2294;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 7885959 rs162036 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.39;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2303;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 7897191 rs10380 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.26;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1892;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 7897283 rs12347 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.38;AMR_AF=0.29;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2162;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 9066802 rs786846 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.73;AMR_AF=0.82;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8154;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 9108333 rs34874986 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.15;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1728;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 9108427 rs41283161 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.15;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1719;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 9122926 rs6894626 C T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.26;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1970;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 9190404 rs1806095 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.30;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2825;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 9190598 rs1806132 G A 100 PASS AA=A;AC=2;AF=0.28;AFR_AF=0.30;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.13;LDAF=0.2811;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 9629813 rs41469 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1576;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 9630187 rs41470 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.47;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1496;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 10227548 rs2136197 C A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9543;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 10239261 rs2438652 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.82;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3512;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 10239278 rs2252505 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.28;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6226;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 10250430 rs2548546 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7490;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 10250443 rs2578618 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7490;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 10254817 rs2578617 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7504;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 10256161 rs1042392 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.41;AMR_AF=0.81;AN=2;ASN_AF=0.89;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.86;LDAF=0.7562;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 10262740 rs2578642 C A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7505;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 10761182 rs267927 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=0.65;AVGPOST=0.9921;ERATE=0.0004;EUR_AF=0.99;LDAF=0.8922;RSQ=0.9755;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-4.22,-0.55,-0.14 +5 10981921 rs13180095 A T 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 11082762 rs2277053 T C 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.95;AMR_AF=0.64;AN=2;ASN_AF=0.94;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.66;LDAF=0.7964;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 11159657 rs1990003 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.08;AMR_AF=0.58;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0021;EUR_AF=0.59;LDAF=0.4232;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13692279 rs2166337 A T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.54;AMR_AF=0.54;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5127;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13701525 rs3734111 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13701536 rs3734110 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.54;AMR_AF=0.54;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5105;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13714740 rs30175 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.38;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4011;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13719022 rs30169 T G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.41;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13719089 rs30168 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.54;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4423;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13729714 rs3777093 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.64;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6105;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13735892 rs3734109 T C 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0018;EUR_AF=0.58;LDAF=0.5691;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13754394 rs2401809 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2911;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13762972 rs6554812 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.37;AMR_AF=0.31;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2729;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13763039 rs6554813 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.37;AMR_AF=0.31;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2729;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13769257 rs12655133 T A 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3469;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13788886 rs10513155 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2221;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13810149 rs35732567 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.31;AMR_AF=0.35;AN=2;ASN_AF=0.58;AVGPOST=0.9804;ERATE=0.0094;EUR_AF=0.40;LDAF=0.4199;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +5 13814682 rs56046501 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.30;AMR_AF=0.20;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3172;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13829608 rs1348691 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.39;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4639;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13829799 rs1348689 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.39;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4639;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13830838 rs143894811 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +5 13865980 rs7703349 T C 100 PASS AA=t;AC=1;AF=0.44;AFR_AF=0.59;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4379;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13866054 rs11958022 A C 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.30;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13882841 rs10057007 A G 100 PASS AA=A;AC=2;AF=0.23;AFR_AF=0.33;AMR_AF=0.27;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2335;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 13882897 rs200249508 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13894894 rs4701997 T A 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.57;AMR_AF=0.48;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4424;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 13900321 rs115004914 G T 100 PASS AA=G;AC=1;AF=0.0032;AMR_AF=0.0028;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13900345 rs1445823 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.66;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6234;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13900544 rs114717951 T G 100 PASS AA=t;AC=1;AF=0.0032;AMR_AF=0.0028;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0032;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 13913913 rs189145014 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0007;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13931205 rs1530497 G C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.65;AMR_AF=0.45;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.29;LDAF=0.4987;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13931340 rs1530496 C T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.58;AMR_AF=0.45;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4840;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 13944512 rs339445 A C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.87;AMR_AF=0.96;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9150;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 14290805 rs30629 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4771;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 14420027 rs30612 A C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.98;AMR_AF=0.82;AN=2;ASN_AF=0.72;AVGPOST=0.9979;ERATE=0.0009;EUR_AF=0.87;LDAF=0.8502;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 14481424 rs199516802 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 14741984 rs2288474 T C 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0027;EUR_AF=0.04;LDAF=0.0873;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 14769103 rs17251667 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0977;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 16177807 rs2582666 A G 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.73;AN=2;ASN_AF=0.93;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7212;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 16477751 rs162850 C A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6815;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 16478200 rs162848 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.54;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6816;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.12 +5 16508674 rs332811 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.47;AMR_AF=0.62;AN=2;ASN_AF=0.40;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5341;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 19520932 rs441865 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3565;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 19591174 rs17285716 A G 100 PASS AA=A;AC=2;AF=0.10;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 19721490 rs12187552 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9735;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 21760731 rs2303749 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 21842436 rs17839323 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0485;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 22078584 rs4371716 C T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.69;AMR_AF=0.27;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3236;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 23527919 rs2099081 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9232;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.56,-0.00 +5 24509947 rs3797171 C A 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.50;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3573;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 31302288 rs2287582 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.09;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4361;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 31317494 rs2302904 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.36;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4968;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 31317529 rs2302903 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.44;AMR_AF=0.51;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5219;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 31317952 rs2229575 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.09;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4300;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 31409115 rs644236 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.61;AMR_AF=0.32;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4595;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 31409252 rs2241337 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.27;AMR_AF=0.27;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3050;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 31423007 rs2287584 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.54;AMR_AF=0.30;AN=2;ASN_AF=0.70;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4425;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 31515373 rs7730136 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.39;AN=2;ASN_AF=0.19;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3088;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32058115 rs151861 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=0.80;AVGPOST=0.9993;ERATE=0.0011;EUR_AF=0.94;LDAF=0.8861;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0219;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 32087228 rs157494 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.40;AMR_AF=0.36;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4570;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32087253 rs157495 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3295;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32087374 rs157496 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3299;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32087583 rs12520467 C A 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0152;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32087802 rs157497 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.41;AMR_AF=0.37;AN=2;ASN_AF=0.67;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4603;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32090660 rs143439364 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0056;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32101168 rs2279232 A T 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.26;AMR_AF=0.60;AN=2;ASN_AF=0.31;AVGPOST=0.9996;ERATE=0.0012;EUR_AF=0.64;LDAF=0.4608;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 32248077 rs11960898 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.24;AMR_AF=0.32;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3647;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32379210 rs1862636 G A 100 PASS AA=g;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.92;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9410;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 32400266 rs1051489 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.32;LDAF=0.2615;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32403346 rs4867440 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.98;AMR_AF=0.92;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 32444286 rs183443 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.79;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=0.9867;ERATE=0.0014;EUR_AF=0.63;LDAF=0.6559;RSQ=0.9760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +5 32712678 rs200405591 G A 100 PASS AA=G;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9984;ERATE=0.0006;LDAF=0.0016;RSQ=0.5611;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 32786389 rs2270915 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.10;AMR_AF=0.19;AN=2;ASN_AF=0.21;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1772;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 32789852 rs1173756 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.52;LDAF=0.6060;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 33448739 rs146538659 A C 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33455121 rs144381018 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33457535 rs2270903 T A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.69;AMR_AF=0.45;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5590;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 33458636 rs3765145 G A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.69;AMR_AF=0.45;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5588;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 33461971 rs17455135 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0187;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33462034 rs3736393 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1074;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 33535060 rs25754 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.62;AMR_AF=0.49;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5425;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 33615904 rs10057235 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.58;AMR_AF=0.58;AN=2;ASN_AF=0.46;AVGPOST=0.9981;ERATE=0.0081;EUR_AF=0.62;LDAF=0.5643;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0247;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 33624430 rs61748198 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.16;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1451;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 33630839 rs4260678 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.67;AMR_AF=0.27;AN=2;ASN_AF=0.11;AVGPOST=0.9984;ERATE=0.0049;EUR_AF=0.26;LDAF=0.3156;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0129;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33637891 rs4076946 C A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.41;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6679;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33637899 rs4076947 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.41;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6682;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33643617 rs4866409 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.37;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.60;LDAF=0.5784;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33648906 rs6870538 G C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.37;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5773;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33649637 rs4242082 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.37;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5773;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33649807 rs4504387 C A 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.37;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5772;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33683089 rs10080136 C T 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.15;AMR_AF=0.05;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33951826 rs35398 G T 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1627;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 33954511 rs2287949 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.85;AMR_AF=0.91;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 33963870 rs26722 C T 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.05;AMR_AF=0.23;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1554;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 33989518 rs2278008 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.87;AVGPOST=0.9991;ERATE=0.0025;EUR_AF=0.74;LDAF=0.7666;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 33998883 rs2287939 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.77;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7616;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 34004707 rs10941112 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.03;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.51;LDAF=0.3516;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 34008100 rs3195676 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.15;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.52;LDAF=0.3812;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 34807928 rs6895634 C T 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.22;AMR_AF=0.54;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3686;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 34811137 rs2271522 T G 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.05;AMR_AF=0.46;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3103;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 34821825 rs10461947 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.10;AMR_AF=0.53;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3309;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 34824555 rs1048944 G T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.59;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4250;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 34945944 rs37442 A T 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.29;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2272;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 34998778 rs16899972 C A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.47;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4539;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 34998877 rs16899974 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2372;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 35010138 rs466067 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.86;AMR_AF=0.96;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9109;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 35033605 rs180749 G A 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.79;AMR_AF=0.94;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 35033706 rs2291702 T C 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.18;AMR_AF=0.50;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4753;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 35037115 rs37369 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.61;AMR_AF=0.24;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0022;EUR_AF=0.09;LDAF=0.3653;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 35641582 rs6897513 A C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6634;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 35644621 rs7706444 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.82;AMR_AF=0.76;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.63;LDAF=0.7594;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 35654711 rs2270558 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6618;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 35659355 rs9292598 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.78;AMR_AF=0.67;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6650;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 35670303 rs34708521 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.10;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.1527;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35692775 rs7710284 T A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.64;AMR_AF=0.22;AN=2;ASN_AF=0.40;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.14;LDAF=0.3357;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35695915 rs62351876 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.13;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.1965;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.24,-0.00,-5.00 +5 35709095 rs13170082 C T 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7405;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35709184 rs13170390 G C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7404;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35713007 rs10073537 T G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7393;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35807070 rs36093359 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.49;AMR_AF=0.24;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3089;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35857177 rs1353252 G C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.90;AMR_AF=0.59;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6517;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35857207 rs1353251 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2601;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 35861068 rs1494558 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.75;AMR_AF=0.57;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.70;LDAF=0.6129;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35871190 rs1494555 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.90;AMR_AF=0.59;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6737;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35871273 rs2228141 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1344;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 35910419 rs1445899 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.25;AMR_AF=0.56;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.5141;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 35910529 rs1445898 C T 100 PASS AA=c;AC=1;AF=0.51;AFR_AF=0.25;AMR_AF=0.56;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.5142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 35921069 rs6859892 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.80;AMR_AF=0.88;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8542;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 35954588 rs700164 C T 100 PASS AA=.;AC=1;AF=0.32;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3158;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 35954614 rs4869444 C T 100 PASS AA=.;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0183;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 36253937 rs4869473 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.7856;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 36260976 rs6881086 T A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.96;LDAF=0.7854;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 36269475 rs78742059 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0366;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 36269551 rs1035480 G C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.68;AMR_AF=0.86;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8012;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 36301420 rs884694 G T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.41;AMR_AF=0.61;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5597;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 36680713 rs3733811 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.29;AN=2;ASN_AF=0.27;AVGPOST=0.9990;ERATE=0.0020;EUR_AF=0.27;LDAF=0.2144;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 36686404 rs2229894 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.11;AMR_AF=0.41;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2820;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 36985267 rs140100861 A G 100 PASS AA=A;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 37036492 rs61748200 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.31;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=0.16;LDAF=0.1641;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 37294473 rs1045908 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2729;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 37341352 rs13172306 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.22;LDAF=0.2039;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 37364443 rs217852 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9762;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 37724990 rs7444391 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9858;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 38338761 rs17339367 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0672;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 38352476 rs2589812 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.31;AMR_AF=0.19;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2354;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 38370537 rs1465567 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.49;AMR_AF=0.16;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2591;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 38527228 rs2289779 T G 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3959;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 38950776 rs2115949 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9762;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 38954994 rs9292726 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.98;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9808;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 38955796 rs2043112 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.25;AMR_AF=0.36;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3920;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 38958968 rs6868591 A C 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.85;AMR_AF=0.85;AN=2;ASN_AF=0.83;AVGPOST=0.9719;ERATE=0.0598;EUR_AF=0.90;LDAF=0.8559;RSQ=0.9034;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 38962543 rs7729745 A G 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9616;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +5 39074296 rs2303808 G C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.51;AVGPOST=0.9945;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4305;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 39108309 rs377022 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.61;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7092;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +5 39108322 rs430630 A G 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.77;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8480;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.27,-0.00 +5 39119723 rs379707 C A 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.22;AMR_AF=0.68;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5204;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 39342308 rs476569 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.88;AMR_AF=0.61;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5936;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 39375082 rs2686162 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.21;AMR_AF=0.44;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3637;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 39377418 rs2738238 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.17;AMR_AF=0.44;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.3560;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 39390061 rs2855512 C A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8949;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 40834595 rs6495 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 40834724 rs150453721 A T 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 40852451 rs188934 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9990;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 40853048 rs16870407 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1449;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 40931237 rs78327832 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 40949997 rs1450656 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.72;AMR_AF=0.61;AN=2;ASN_AF=0.65;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6568;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 40955561 rs1063499 G C 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.33;AMR_AF=0.55;AN=2;ASN_AF=0.53;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5122;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 40964816 rs7713884 C A 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.35;AMR_AF=0.19;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2795;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 40998196 rs704040 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.63;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6506;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 40998235 rs722575 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3418;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 40998814 rs2876850 T A 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3420;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 40999900 rs1376175 T A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.51;AMR_AF=0.45;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4159;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41000343 rs1001420 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.63;AMR_AF=0.63;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.69;LDAF=0.6664;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41004406 rs7711722 A T 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4027;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41005791 rs10941529 T C 100 PASS AA=t;AC=1;AF=0.64;AFR_AF=0.60;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.63;LDAF=0.6432;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.43,-0.02,-5.00 +5 41008780 rs2271704 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.87;AMR_AF=0.86;AN=2;ASN_AF=0.61;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7795;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41033112 rs4957367 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.50;AMR_AF=0.65;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.64;LDAF=0.5316;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41039000 rs325849 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7335;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 41042284 rs325854 G T 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.57;AMR_AF=0.82;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7244;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41045835 rs6864243 C G 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.44;AMR_AF=0.67;AN=2;ASN_AF=0.43;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5512;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41048533 rs13173930 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.11;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.39;LDAF=0.2565;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41049389 rs325863 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.83;AMR_AF=0.86;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8103;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 41049397 rs325864 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.83;AMR_AF=0.86;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8104;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 41057309 rs138816420 A T 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0010;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41061716 rs865093 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.82;AMR_AF=0.78;AN=2;ASN_AF=0.60;AVGPOST=0.9951;ERATE=0.0024;EUR_AF=0.84;LDAF=0.7620;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 41061871 rs587412 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.43;AMR_AF=0.39;AN=2;ASN_AF=0.33;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.60;LDAF=0.4559;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41064709 rs79638256 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0142;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 41069852 rs13174484 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.23;AMR_AF=0.25;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.39;LDAF=0.2654;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41154150 rs4957374 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.87;AMR_AF=0.89;AN=2;ASN_AF=0.80;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8451;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +5 41158863 rs6866352 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 41186320 rs200930599 A C 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41199849 rs141459878 C T 100 PASS AA=C;AC=1;AF=0.0046;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0046;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 41199959 rs1801033 G T 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.55;AMR_AF=0.60;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.65;LDAF=0.5630;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 41382536 rs16871312 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.26;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0617;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 41382681 rs319013 G T 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.46;AMR_AF=0.61;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.63;LDAF=0.5645;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41739626 rs16871940 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 41853514 rs7723992 T G 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.36;AMR_AF=0.10;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1157;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 41925435 rs2231917 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9979;ERATE=0.0005;LDAF=0.0240;RSQ=0.9652;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-0.41,-0.22,-2.40 +5 42700044 rs6179 A G 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.39;AMR_AF=0.73;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.6691;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 43161337 rs903391 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.27;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3633;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 43245922 rs13176855 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0017;EUR_AF=0.42;LDAF=0.2922;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 43277283 rs61734291 G A 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0393;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 43280047 rs77210110 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.16;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0393;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 43535754 rs6869933 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.63;AMR_AF=0.43;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.48;LDAF=0.4036;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 43609343 rs10057103 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.92;AMR_AF=0.51;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5421;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 43704542 rs55984047 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 44305092 rs111763965 T A 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0151;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 45303672 rs16902099 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 50045967 rs2442107 G T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.51;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9941;ERATE=0.0244;EUR_AF=0.67;LDAF=0.6245;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 50057729 rs282547 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.18;AMR_AF=0.62;AN=2;ASN_AF=0.74;AVGPOST=0.9959;ERATE=0.0106;EUR_AF=0.66;LDAF=0.5667;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 50117060 rs140755482 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 50680331 rs180866141 A G 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0012;RSQ=0.8534;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 50685505 rs2303751 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.54;AMR_AF=0.35;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3463;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52096889 rs1499280 C A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.91;AMR_AF=0.91;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8958;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 52157374 rs2447867 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.84;AMR_AF=0.71;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7500;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 52193287 rs1531545 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.69;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.51;LDAF=0.5850;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 52201722 rs4145748 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0996;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52214581 rs2279587 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52229745 rs12520591 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1001;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52235802 rs1904165 T G 100 PASS AA=G;AC=1;AF=0.87;AFR_AF=0.87;AMR_AF=0.90;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8716;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52322721 rs26678 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.20;AMR_AF=0.26;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2665;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 52337908 rs3212441 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.23;AMR_AF=0.35;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2773;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52338083 rs1363192 T G 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.23;AMR_AF=0.35;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2774;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52344610 rs1421933 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.81;AMR_AF=0.76;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7102;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52347369 rs1126643 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.27;AMR_AF=0.45;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3634;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52351413 rs1062535 G A 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.29;AMR_AF=0.45;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3679;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52355854 rs2303127 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.45;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3629;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52366138 rs2112290 G A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.81;AMR_AF=0.76;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6901;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52368922 rs984966 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3624;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52370174 rs3212591 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.52;AMR_AF=0.50;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4699;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52379277 rs2303122 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3496;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52404312 rs153602 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.66;AMR_AF=0.50;AN=2;ASN_AF=0.22;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4468;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 52856504 rs2279516 G C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.84;AMR_AF=0.65;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6655;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 52942083 rs31304 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9273;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 52942197 rs31303 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.88;AMR_AF=0.80;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.75;LDAF=0.7866;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 52979097 rs567 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.26;AMR_AF=0.52;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3731;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 53751901 rs7699 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.44;AMR_AF=0.50;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.63;LDAF=0.4981;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 53751988 rs7823 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.75;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.64;LDAF=0.5821;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 53814052 rs2548615 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9809;ERATE=0.0017;EUR_AF=0.99;LDAF=0.9760;RSQ=0.6709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +5 53814394 rs2548614 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9880;RSQ=0.9630;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +5 53815240 rs61739378 G C 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.25;AMR_AF=0.30;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3028;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54403957 rs3104233 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9785;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54404015 rs1875506 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54410120 rs3104230 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9790;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54439466 rs1021580 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.58;AMR_AF=0.86;AN=2;ASN_AF=0.73;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.81;LDAF=0.7428;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54459961 rs381852 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8409;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54528388 rs72749883 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0535;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 54563480 rs17647768 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.0017;AVGPOST=0.9989;ERATE=0.0060;EUR_AF=0.10;LDAF=0.0680;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 54693374 rs230802 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.73;AMR_AF=0.90;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8149;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54693402 rs230801 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.73;AMR_AF=0.90;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8149;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 54721642 rs230750 A C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.73;AMR_AF=0.90;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8144;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54830380 rs11745331 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.72;AVGPOST=0.9953;ERATE=0.0004;EUR_AF=0.88;LDAF=0.8450;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.95,-0.00 +5 54923705 rs73119722 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.12;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.02;LDAF=0.0470;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 54941617 rs35361432 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.12;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0462;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 54960609 rs4865614 A G 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.44;AMR_AF=0.61;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5497;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54960673 rs4865615 C G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.44;AMR_AF=0.61;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5498;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54960687 rs4865616 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.44;AMR_AF=0.61;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5498;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 54993829 rs3761766 A G 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.44;AMR_AF=0.61;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5512;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 55058992 rs3761776 C A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.64;AMR_AF=0.30;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4082;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 55082474 rs957459 C T 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.67;AMR_AF=0.46;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4594;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 56152416 rs832567 C A 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.64;AMR_AF=0.54;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5397;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 56161787 rs832575 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.78;AMR_AF=0.77;AN=2;ASN_AF=0.70;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7875;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 56177443 rs702689 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.48;AMR_AF=0.53;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.70;LDAF=0.5016;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 56177743 rs832582 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6978;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 56178111 rs3822625 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.12;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0947;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 56178217 rs832583 A C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6978;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 56219054 rs112542697 A T 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 56224714 rs252893 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.62;AMR_AF=0.64;AN=2;ASN_AF=0.43;AVGPOST=0.9927;ERATE=0.0042;EUR_AF=0.72;LDAF=0.6082;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 56233541 rs2591968 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.36;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3899;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 56233551 rs2591967 C G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.36;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3899;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 56242774 rs2034244 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.46;AMR_AF=0.36;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4081;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 56526783 rs1130203 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.97;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.8278;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 57751443 rs1042994 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1253;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 57753116 rs17710502 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1248;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 57753149 rs17767072 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1243;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 57753251 rs2220785 T A 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1243;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 57753437 rs2201293 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1243;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 57753456 rs702723 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.69;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.7308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 57754004 rs697135 C T 100 PASS AA=t;AC=1;AF=0.44;AFR_AF=0.67;AMR_AF=0.45;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4411;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 57754005 rs1848510 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4031;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 57754007 rs59135347 T G 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1243;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 57754040 rs17710615 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1243;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 57754808 rs697133 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.73;AMR_AF=0.69;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.7308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 57755703 rs3211270 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.55;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3893;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.03 +5 57790337 rs7704785 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.72;AMR_AF=0.56;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5005;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 58284283 rs3805556 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.89;AMR_AF=0.87;AN=2;ASN_AF=0.87;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.81;LDAF=0.8578;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.70,-0.01 +5 58286625 rs1553114 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.75;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8081;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +5 58289334 rs7724713 A G 100 PASS AA=g;AC=2;AF=0.81;AFR_AF=0.75;AMR_AF=0.87;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8093;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 58489384 rs27175 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.91;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9749;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 59899413 rs11740327 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.24;AMR_AF=0.56;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.54;LDAF=0.4814;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 60241142 rs158921 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.57;AMR_AF=0.66;AN=2;ASN_AF=0.89;AVGPOST=0.9798;ERATE=0.0122;EUR_AF=0.53;LDAF=0.6521;RSQ=0.9713;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +5 60369083 rs10471502 A G 100 PASS AA=.;AC=1;AF=0.68;AFR_AF=0.46;AMR_AF=0.70;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6796;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 61657377 rs247266 A T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.86;AMR_AF=0.52;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6352;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 61658396 rs113580902 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.18;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9988;ERATE=0.0004;LDAF=0.0476;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.800:-1.80,-0.01,-5.00 +5 61676902 rs247253 G T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.63;AMR_AF=0.47;AN=2;ASN_AF=0.67;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.43;LDAF=0.5432;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 61676911 rs247254 T G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.85;AMR_AF=0.52;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6334;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 61694379 rs247264 T C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.69;AMR_AF=0.51;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5928;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0083;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 61697859 rs27089 C T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.56;AMR_AF=0.52;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0023;EUR_AF=0.52;LDAF=0.5769;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 61772535 rs26635 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.48;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4177;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 61772591 rs26620 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.05;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0779;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 61785936 rs26644 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5247;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 61833044 rs34906196 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 61847073 rs32170 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0900;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 63257253 rs6294 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.33;AMR_AF=0.05;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0918;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 63905068 rs889248 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.80;AMR_AF=0.88;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7596;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 64020241 rs16879016 T C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.42;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1124;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +5 64023981 rs275819 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.89;AMR_AF=0.56;AN=2;ASN_AF=0.53;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6197;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 64064943 rs1363953 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.81;AMR_AF=0.22;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.17;LDAF=0.4127;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 64273018 rs1309581 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.28;AMR_AF=0.36;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3419;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 64447777 rs17206779 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.17;AMR_AF=0.53;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3977;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 64838584 rs6891597 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.40;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4785;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 64848412 rs3213939 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 64859110 rs72762442 T A 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9705;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 64865658 rs3752673 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1691;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 64881936 rs27141 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.63;AMR_AF=0.52;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5580;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 64890479 rs61511730 A C 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.63;AMR_AF=0.52;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5585;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 64919991 rs154854 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.62;AMR_AF=0.52;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5576;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 64933505 rs11741124 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1690;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 65073224 rs34979 C A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9296;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 65108215 rs2254485 A G 100 PASS AA=N;AC=1;AF=0.68;AFR_AF=0.85;AMR_AF=0.63;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6769;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 65317181 rs706679 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.48;AMR_AF=0.70;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.6700;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 65321311 rs3213837 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.09;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.15;LDAF=0.1057;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 65350374 rs36303 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2299;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 65350481 rs3805466 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0951;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 65459773 rs3763061 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1512;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 65892448 rs4502771 C G 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.34;AVGPOST=0.9830;ERATE=0.0016;EUR_AF=0.30;LDAF=0.3127;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.80,-0.01 +5 65892594 rs73102407 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.16;AMR_AF=0.11;AN=2;ASN_AF=0.27;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.06;LDAF=0.1458;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +5 66429329 rs2371882 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 66459878 rs1705399 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.98;AMR_AF=0.94;AN=2;ASN_AF=0.90;AVGPOST=0.9898;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9462;RSQ=0.9214;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.12,-0.03 +5 66480004 rs1697144 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 67522722 rs706713 C T 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.45;AMR_AF=0.33;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0069;EUR_AF=0.25;LDAF=0.4407;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 67522851 rs706714 A C 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.40;AMR_AF=0.32;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=0.27;LDAF=0.4388;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 67569746 rs171649 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3053;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 67589188 rs3730090 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.27;AMR_AF=0.31;AN=2;ASN_AF=0.40;AVGPOST=0.9911;ERATE=0.1497;EUR_AF=0.27;LDAF=0.3101;RSQ=0.9754;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 68525027 rs2932777 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.40;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4295;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 68531253 rs2972388 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.78;AMR_AF=0.56;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5960;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 68602746 rs6881767 G C 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.31;AMR_AF=0.43;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4132;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 68609885 rs11749723 G T 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4213;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 68695940 rs1045051 T G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.34;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2569;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 68715310 rs1185246 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.42;AMR_AF=0.49;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4780;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 68868255 rs201020620 C T 100 PASS AA=T;AC=2;AF=0.18;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.25;AVGPOST=0.7979;ERATE=0.0049;EUR_AF=0.18;LDAF=0.2330;RSQ=0.5984;SNPSOURCE=EXOME;THETA=0.0111;VT=SNP GT:DS:GL 1|1:1.200:-0.48,-0.48,-0.48 +5 70308251 rs28409706 C T 100 PASS AA=t;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=0.89;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8574;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70338021 rs199781191 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.33;AVGPOST=0.8145;ERATE=0.0195;EUR_AF=0.24;LDAF=0.2828;RSQ=0.6493;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.150:-0.48,-0.48,-0.48 +5 70343789 rs200903404 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.28;AVGPOST=0.8172;ERATE=0.0056;EUR_AF=0.20;LDAF=0.2501;RSQ=0.6534;SNPSOURCE=EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:0.850:-0.48,-0.48,-0.48 +5 70344903 rs199999389 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.66;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=0.6484;ERATE=0.0300;EUR_AF=0.60;LDAF=0.5595;RSQ=0.1907;SNPSOURCE=EXOME;THETA=0.0098;VT=SNP GT:DS:GL 1|0:0.950:-0.48,-0.48,-0.48 +5 70751818 rs3748043 T G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.55;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.83;LDAF=0.7846;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +5 70800475 rs3761966 C T 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3432;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70806711 rs715747 C G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.60;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.83;LDAF=0.7940;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70806958 rs6886336 G A 100 PASS AA=g;AC=2;AF=0.82;AFR_AF=0.72;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8220;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70834926 rs276589 T C 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.52;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3456;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70837295 rs6453014 A C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.72;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8246;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70858194 rs277941 C T 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3431;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70922616 rs12516456 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.70;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0013;EUR_AF=0.83;LDAF=0.8181;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70930966 rs277984 A G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.08;AMR_AF=0.46;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3533;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 70945075 rs10064079 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.71;AMR_AF=0.83;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.85;LDAF=0.8501;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 71490962 rs1866374 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.98;AMR_AF=0.77;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8907;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 71739546 rs4267851 C G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.83;AMR_AF=0.73;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8670;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 71743024 rs10043295 G C 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8391;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 71756102 rs7721922 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.5173;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 71756670 rs2278600 C T 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.35;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2606;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 72178873 rs115115607 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 72182857 rs4704045 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.27;AMR_AF=0.58;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4498;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 72184098 rs17606 C T 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.74;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8318;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 72348272 rs185435 A G 100 PASS AA=a;AC=1;AF=0.22;AFR_AF=0.43;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2171;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 72419410 rs7731777 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 72798724 rs347233 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.05;AMR_AF=0.45;AN=2;ASN_AF=0.27;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2967;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 72798845 rs14010 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.75;AMR_AF=0.16;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.07;LDAF=0.3622;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 72872766 rs1220622 C T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.72;AMR_AF=0.75;AN=2;ASN_AF=0.84;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7499;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 72874801 rs12652195 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.04;AMR_AF=0.34;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2544;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 73930751 rs300239 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.50;AMR_AF=0.75;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6499;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 73931246 rs442425 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.86;AMR_AF=0.83;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7870;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 73932315 rs9176 T C 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.50;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.70;LDAF=0.6632;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 73981270 rs820878 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9788;RSQ=0.9458;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +5 73992609 rs1665894 G A 100 PASS AA=A;AC=1;AF=0.87;AFR_AF=0.83;AMR_AF=0.84;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8729;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 74017499 rs1048167 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.25;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1248;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 74034245 rs7732843 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.31;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1399;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 74037386 rs16872235 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1074;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 74046464 rs17852781 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1613;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74055209 rs957680 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.37;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1544;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 74063154 rs1043968 C G 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.63;AMR_AF=0.36;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3268;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 74069863 rs6874609 A G 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.77;AMR_AF=0.37;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3588;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 74134742 rs16872323 T C 100 PASS AA=t;AC=1;AF=0.13;AFR_AF=0.27;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1288;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 74137541 rs2044409 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.09;AN=2;ASN_AF=0.05;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0316;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74651084 rs3846662 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.94;AMR_AF=0.48;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.5841;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74681773 rs698912 T C 100 PASS AA=t;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.16;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2637;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74685520 rs3761743 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.60;AMR_AF=0.22;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.3510;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74877266 rs3213801 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.24;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2560;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74892002 rs5744712 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1513;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74981322 rs17563610 A T 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.10;AVGPOST=0.9966;ERATE=0.0060;EUR_AF=0.21;LDAF=0.1400;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74984818 rs17563686 A T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2019;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74988336 rs888788 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1336;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74988369 rs888789 A G 100 PASS AA=a;AC=1;AF=0.49;AFR_AF=0.50;AMR_AF=0.46;AN=2;ASN_AF=0.51;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4892;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 74998426 rs17649248 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1376;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 75003678 rs2307111 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.90;AMR_AF=0.47;AN=2;ASN_AF=0.53;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.41;LDAF=0.5619;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 75008193 rs2047059 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.33;AMR_AF=0.27;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2642;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 75427935 rs10070440 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.26;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.74;LDAF=0.4860;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 75858215 rs58087114 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1600;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 75884734 rs10036913 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.75;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.9990;ERATE=0.0020;EUR_AF=0.50;LDAF=0.6424;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 75888788 rs3736394 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.63;AMR_AF=0.60;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5186;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 75923294 rs2431352 T G 100 PASS AA=G;AC=1;AF=0.90;AFR_AF=0.94;AMR_AF=0.78;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9013;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 75923307 rs2909888 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 75932971 rs138758867 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0256;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 75936944 rs457821 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6124;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 75960825 rs253092 G C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=0.9963;ERATE=0.0053;EUR_AF=0.88;LDAF=0.8480;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 75960865 rs253093 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.97;AMR_AF=0.98;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9657;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 75964702 rs3764935 G A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.27;AMR_AF=0.28;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2381;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 75969747 rs41271836 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1207;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 75996865 rs468648 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.11;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1864;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 76028124 rs168753 A T 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.44;AVGPOST=0.9962;ERATE=0.0041;EUR_AF=0.17;LDAF=0.2009;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 76128521 rs616235 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9585;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 76129053 rs631465 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8545;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 76171252 rs1320308 A C 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.58;AMR_AF=0.69;AN=2;ASN_AF=0.51;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6182;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 76249536 rs1715771 C G 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.09;AMR_AF=0.50;AN=2;ASN_AF=0.51;AVGPOST=0.9858;ERATE=0.0007;EUR_AF=0.48;LDAF=0.4033;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0110;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +5 76343999 rs13155212 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.23;AMR_AF=0.24;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.25;LDAF=0.2108;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 76359024 rs34400049 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2353;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 76704849 rs186753 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 76708987 rs335614 A G 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.79;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7413;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 76734084 rs33204 C T 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.65;AMR_AF=0.59;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.40;LDAF=0.5041;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 76747087 rs335609 T C 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.88;AMR_AF=0.68;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6296;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 76749605 rs17751147 G C 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.09;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1056;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 76926578 rs13357072 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9949;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9888;RSQ=0.8307;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.43,-0.00 +5 76926651 rs62362480 A C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.56;AMR_AF=0.45;AN=2;ASN_AF=0.33;AVGPOST=0.9974;ERATE=0.0006;EUR_AF=0.47;LDAF=0.4495;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +5 77004031 rs9791124 A T 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.27;AMR_AF=0.13;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 77412011 rs42360 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.31;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1954;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 77425028 rs6453373 A T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=0.47;AVGPOST=0.9986;ERATE=0.0008;EUR_AF=0.93;LDAF=0.8144;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 77473165 rs4532349 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1577;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 77784738 rs2241566 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.87;AMR_AF=0.59;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7386;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78076517 rs3822473 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0955;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 78135276 rs25415 T G 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.06;AMR_AF=0.51;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3191;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 78181423 rs17220759 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0950;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 78181477 rs1065757 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3410;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78340257 rs248385 C G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6083;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78340286 rs532964 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6083;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78340411 rs531982 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.29;AMR_AF=0.59;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4872;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78351636 rs2253262 A C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.55;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6512;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78373413 rs201966732 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0006;RSQ=0.7604;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +5 78373431 rs682985 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.19;AMR_AF=0.63;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5056;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78378825 rs56689763 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0110;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 78421959 rs3733890 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3011;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 78422035 rs4703772 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0238;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 78573790 rs13182512 A T 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.53;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5211;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78586914 rs10043008 G T 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.42;AMR_AF=0.51;AN=2;ASN_AF=0.46;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5001;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78596044 rs10514159 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.94;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.62;LDAF=0.6827;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78742858 rs12516663 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2873;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 78742980 rs6862358 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.97;AMR_AF=0.69;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.7582;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 78964729 rs10514164 T G 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0448;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 79026434 rs35928567 G A 100 PASS AA=G;AC=2;AF=0.03;AFR_AF=0.01;AMR_AF=0.15;AN=2;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.0040;LDAF=0.0285;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79084949 rs2302979 G C 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2015;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79351735 rs423906 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.37;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9941;ERATE=0.0075;EUR_AF=0.19;LDAF=0.2645;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 79351852 rs438042 A T 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.64;AMR_AF=0.56;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5562;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 79351859 rs405482 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.49;AMR_AF=0.50;AN=2;ASN_AF=0.44;AVGPOST=0.9837;ERATE=0.0277;EUR_AF=0.43;LDAF=0.4578;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 79351860 rs447875 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.49;AMR_AF=0.49;AN=2;ASN_AF=0.44;AVGPOST=0.9828;ERATE=0.0259;EUR_AF=0.43;LDAF=0.4590;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 79354147 rs368936 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.64;AMR_AF=0.56;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5584;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 79354647 rs432267 C G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.64;AMR_AF=0.56;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5571;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 79375724 rs2288395 G C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.47;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3610;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 79616083 rs1862136 G C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.85;AMR_AF=0.68;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7762;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 79616544 rs2047589 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0414;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.25 +5 79733079 rs2544600 T C 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.43;AMR_AF=0.88;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7976;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79734297 rs259028 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.69;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8798;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79734409 rs259029 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.76;AMR_AF=0.95;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8999;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79735858 rs168939 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.37;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7806;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79743821 rs2251759 T A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.69;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8798;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79745469 rs249038 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.70;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=0.9984;ERATE=0.0018;EUR_AF=0.94;LDAF=0.8833;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79747291 rs249039 A G 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.41;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7902;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79773028 rs166062 T G 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.46;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=0.9968;ERATE=0.0035;EUR_AF=0.89;LDAF=0.8036;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79855372 rs32857 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.9392;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 79855876 rs187262 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.87;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8716;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +5 79950512 rs1105524 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.95;AMR_AF=0.63;AN=2;ASN_AF=0.39;AVGPOST=0.9888;ERATE=0.0009;EUR_AF=0.68;LDAF=0.6562;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.77,-0.01 +5 80149981 rs184967 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.86;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.86;LDAF=0.8926;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 80382806 rs7733625 G T 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.19;AMR_AF=0.33;AN=2;ASN_AF=0.25;AVGPOST=0.9993;ERATE=0.0007;EUR_AF=0.28;LDAF=0.2580;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 80390225 rs505748 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.23;AMR_AF=0.46;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3967;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +5 80409729 rs10942942 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.60;AMR_AF=0.35;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4082;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 80562120 rs545 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2665;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 80604430 rs1055383 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1454;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 80655709 rs13163821 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1376;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 81549216 rs1864183 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.20;AMR_AF=0.53;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5393;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 81549240 rs1864182 C A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.21;AMR_AF=0.57;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5847;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 81549280 rs1864181 C T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.21;AMR_AF=0.57;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5846;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 81572184 rs226200 G C 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.14;AMR_AF=0.65;AN=2;ASN_AF=0.92;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5829;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 81613781 rs142800418 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82360783 rs2306336 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.57;AMR_AF=0.33;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3949;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 82491674 rs28360135 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0165;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82786194 rs12332199 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.53;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.40;LDAF=0.3724;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 82789647 rs4470745 A G 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.23;AMR_AF=0.31;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0009;EUR_AF=0.41;LDAF=0.2675;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 82833145 rs2548541 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.80;AMR_AF=0.67;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6828;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82833369 rs309559 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.53;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4859;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82834299 rs188703 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.28;AMR_AF=0.47;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3816;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82834630 rs309557 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.46;AMR_AF=0.54;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.52;LDAF=0.4818;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82835545 rs160279 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.54;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4858;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82835724 rs160278 T A 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.53;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4849;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82837631 rs160277 G T 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3837;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82875800 rs308365 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9896;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 82940273 rs2242128 C G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.86;AMR_AF=0.73;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7280;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 82940510 rs1457081 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.86;AMR_AF=0.73;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7276;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 83476194 rs163715 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.18;AMR_AF=0.35;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3082;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 86564564 rs111840875 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0165;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 87498849 rs3097146 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.11;AMR_AF=0.58;AN=2;ASN_AF=0.75;AVGPOST=0.9977;ERATE=0.0032;EUR_AF=0.59;LDAF=0.5229;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 89769647 rs3763072 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9910;ERATE=0.0016;EUR_AF=0.33;LDAF=0.3770;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-2.79 +5 89769728 rs2162986 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.93;AVGPOST=0.9894;ERATE=0.0009;EUR_AF=0.99;LDAF=0.9763;RSQ=0.8342;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +5 89820984 rs10069050 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.75;AMR_AF=0.44;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5768;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 89938587 rs2366773 C T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.96;AMR_AF=0.80;AN=2;ASN_AF=0.82;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8065;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89943571 rs2366777 G T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7965;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89969880 rs72782753 A G 100 PASS AA=A;AC=1;AF=0.0037;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0037;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 89979380 rs4916683 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3495;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89979589 rs4916684 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.94;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7902;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89979698 rs4916685 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.27;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.32;LDAF=0.3642;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89985882 rs10037067 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.33;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3775;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89988412 rs10040165 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.32;LDAF=0.3496;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89988504 rs2366926 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3491;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89989779 rs16876822 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3492;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89990324 rs1878878 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7944;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 89990545 rs10068473 C A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.73;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.48;LDAF=0.6526;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90020868 rs7723259 A C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.93;AMR_AF=0.78;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7857;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90020923 rs16869042 T G 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.22;AMR_AF=0.49;AN=2;ASN_AF=0.43;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3527;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90024735 rs2366928 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.71;LDAF=0.7979;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90052289 rs10062026 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.05;AMR_AF=0.48;AN=2;ASN_AF=0.51;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.32;LDAF=0.3348;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90052372 rs2438349 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.68;AMR_AF=0.59;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5447;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90107108 rs2438374 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.82;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9475;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 90119324 rs2438378 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 90136624 rs149544995 C T 100 PASS AA=C;AC=1;AF=0.0018;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0019;RSQ=0.9546;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90151589 rs2247870 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.15;AMR_AF=0.67;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.57;LDAF=0.4963;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90449031 rs7726023 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.88;AMR_AF=0.93;AN=2;ASN_AF=0.88;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8969;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.90,-0.00 +5 90449154 rs13158963 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1390;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 90667296 rs187329401 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0078;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 94206202 rs159032 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1550;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 94206714 rs2277012 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0233;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 94224591 rs17084201 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.05;AMR_AF=0.01;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0242;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 94728631 rs2546097 G T 100 PASS AA=T;AC=1;AF=0.82;AFR_AF=0.97;AMR_AF=0.77;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8236;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 94772540 rs6878669 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 94860229 rs142058280 G A 100 PASS AA=G;AC=1;AF=0.0032;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0032;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 94876493 rs200646357 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8999;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +5 95733112 rs6233 A G 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.36;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3428;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 96076487 rs7724759 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.12;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.33;LDAF=0.2025;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96078309 rs26503 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.52;AMR_AF=0.79;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.72;LDAF=0.6797;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +5 96086334 rs754615 G C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.2998;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96093138 rs2290677 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0745;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96093222 rs27654 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.40;AMR_AF=0.41;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3984;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96093389 rs57890546 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0745;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96103110 rs3214019 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0737;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96112083 rs1065407 T G 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.25;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0015;EUR_AF=0.37;LDAF=0.2112;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96116940 rs27042 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.47;AMR_AF=0.27;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3328;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96118852 rs27044 G C 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.68;AMR_AF=0.65;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6499;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 96121524 rs469783 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.57;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5434;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96121715 rs469758 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5900;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96122260 rs30379 T G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5900;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96122281 rs30380 A C 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5900;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96124330 rs30187 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.58;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5907;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96126197 rs27710 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.58;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96126308 rs27529 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.58;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96127905 rs27640 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.55;AMR_AF=0.70;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.6494;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96129512 rs27434 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.55;AMR_AF=0.70;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.79;LDAF=0.6494;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96136525 rs27528 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2532;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96139250 rs26653 C G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.45;AMR_AF=0.60;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.71;LDAF=0.5731;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96139464 rs3734016 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.08;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0882;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96231000 rs2549782 G T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5544;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96232142 rs2548538 T A 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5543;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96232222 rs2548537 G C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5543;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96232402 rs2548536 T A 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5540;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96235896 rs2248374 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5544;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96237326 rs2287988 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5544;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96237413 rs171647 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5544;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96239258 rs17408150 T A 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0242;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96239294 rs1423568 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5543;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96244638 rs2549795 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96244719 rs17486915 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0238;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96245343 rs2549796 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.40;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96245439 rs1056893 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96245518 rs2549797 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5548;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96249115 rs2255546 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5540;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96314795 rs79631011 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0229;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96322360 rs41276279 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0234;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 96339273 rs27613 T G 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.54;AMR_AF=0.63;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5841;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 96363407 rs27300 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.55;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6015;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 96364063 rs27712 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.85;AMR_AF=0.70;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7048;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 98193867 rs77597932 G T 100 PASS AA=G;AC=2;AF=0.05;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0535;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 98199077 rs10069735 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.32;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2974;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 99897866 rs6874840 G A 100 PASS AA=A;AC=2;AF=0.21;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2121;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 99921841 rs2370612 G C 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.83;AMR_AF=0.52;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4763;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 100222343 rs6595534 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.21;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 101726648 rs6874612 C A 100 PASS AA=a;AC=2;AF=0.57;AFR_AF=0.61;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=0.9807;ERATE=0.0180;EUR_AF=0.62;LDAF=0.5708;RSQ=0.9742;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 101795490 rs11746217 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.65;AMR_AF=0.57;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6001;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 101816104 rs6884141 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.04;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.2025;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 102310166 rs3733939 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.51;AMR_AF=0.37;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4178;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 102345546 rs11544128 A C 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2728;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 102423576 rs468844 A G 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2870;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +5 102423579 rs469094 A C 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2876;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +5 102433409 rs34813 G A 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2880;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 102489511 rs34767 T G 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2669;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 102520400 rs26821 A C 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.40;AMR_AF=0.27;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3523;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 102537200 rs154290 T G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.12;AMR_AF=0.45;AN=2;ASN_AF=0.58;AVGPOST=0.9977;ERATE=0.0007;EUR_AF=0.49;LDAF=0.4255;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +5 102537298 rs17155147 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0255;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 102537379 rs28025 A G 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.08;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2748;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +5 102886512 rs58006145 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2492;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 102891695 rs10045774 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.57;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5877;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 108133967 rs2229085 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.30;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1577;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 108516629 rs6594349 A G 100 PASS AA=g;AC=1;AF=0.74;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7398;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 108713970 rs10042721 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.85;AMR_AF=0.67;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0018;EUR_AF=0.74;LDAF=0.6651;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 109049178 rs17162097 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.28;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1097;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 109110591 rs61735369 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0800;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 110784822 rs2116824 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6357;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 110819753 rs25925 G C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.94;AMR_AF=0.78;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7527;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 111066590 rs1055975 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0189;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 111071106 rs3797722 T A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.60;AMR_AF=0.29;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0032;EUR_AF=0.20;LDAF=0.3475;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 111504479 rs7703522 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.90;AMR_AF=0.74;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.8166;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 111506069 rs10040749 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.90;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.66;LDAF=0.8133;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 111519740 rs1560058 T C 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.54;AMR_AF=0.77;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7516;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 111530284 rs7719346 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.90;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.8441;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 111545670 rs890757 C G 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.59;AMR_AF=0.77;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.70;LDAF=0.7628;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 112162854 rs2229992 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.17;AMR_AF=0.64;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.60;LDAF=0.5330;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112164561 rs351771 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.53;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6613;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112175770 rs41115 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.53;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6618;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112176325 rs42427 G A 100 PASS AA=g;AC=1;AF=0.66;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6645;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112176559 rs866006 T G 100 PASS AA=t;AC=1;AF=0.66;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6631;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112176756 rs459552 T A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8619;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 112177036 rs201988789 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.23;AVGPOST=0.9806;ERATE=0.1097;EUR_AF=0.18;LDAF=0.1828;RSQ=0.9404;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112177171 rs465899 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6631;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112222694 rs712662 C G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.59;AMR_AF=0.30;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3515;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112238039 rs153546 A C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.62;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3972;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112256814 rs149190 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4556;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112257908 rs153556 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.72;AMR_AF=0.45;AN=2;ASN_AF=0.28;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4687;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112312676 rs33555 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 112321488 rs33543 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2559;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112328377 rs3733969 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.80;AMR_AF=0.75;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7815;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112349070 rs9326869 T C 100 PASS AA=c;AC=1;AF=0.79;AFR_AF=0.85;AMR_AF=0.76;AN=2;ASN_AF=0.83;AVGPOST=0.9991;ERATE=0.0018;EUR_AF=0.75;LDAF=0.7918;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112379289 rs2227948 G A 100 PASS AA=g;AC=1;AF=0.53;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.51;LDAF=0.5339;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112384802 rs6594664 G A 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.59;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8753;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 112385035 rs7708603 T G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5427;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112399791 rs2227947 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.17;AMR_AF=0.64;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5404;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112406862 rs2227950 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3187;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112439941 rs6594681 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 112479004 rs6890140 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 112487137 rs1947026 A C 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.56;AMR_AF=0.71;AN=2;ASN_AF=0.73;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.71;LDAF=0.6816;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112676191 rs10900684 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.82;AMR_AF=0.51;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4883;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112720648 rs17327526 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.17;AN=2;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.20;LDAF=0.1071;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112823998 rs348943 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=0.9941;ERATE=0.0013;EUR_AF=0.48;LDAF=0.4945;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112849801 rs1862315 A C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.57;AMR_AF=0.40;AN=2;ASN_AF=0.21;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3216;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112849823 rs2416281 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.30;AMR_AF=0.32;AN=2;ASN_AF=0.11;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.16;LDAF=0.2050;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +5 112851109 rs1820057 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.57;AMR_AF=0.40;AN=2;ASN_AF=0.22;AVGPOST=0.9965;ERATE=0.0019;EUR_AF=0.21;LDAF=0.3252;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112868693 rs6594732 C A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.56;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.3241;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112884197 rs4444963 C G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.96;AMR_AF=0.56;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5763;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112884380 rs6889574 G A 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.66;AMR_AF=0.37;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112884728 rs4639215 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.96;AMR_AF=0.56;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5758;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112884752 rs6594734 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.67;AMR_AF=0.37;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3341;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112889065 rs60871281 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.64;AMR_AF=0.37;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3277;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112889374 rs10071816 G A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.66;AMR_AF=0.37;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112889608 rs10079758 T A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.64;AMR_AF=0.37;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3273;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112899702 rs6886628 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.66;AMR_AF=0.37;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3304;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112899876 rs11241214 G A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.66;AMR_AF=0.37;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3314;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112901751 rs143973199 A C 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 112917278 rs11748794 T G 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2089;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112926982 rs2303717 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.96;AMR_AF=0.56;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5753;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 112929013 rs1132528 T A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.96;AMR_AF=0.56;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5721;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 113829121 rs1841251 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 114462355 rs2974617 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.90;AMR_AF=0.97;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9421;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 114462589 rs2921623 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 114469724 rs17137481 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.04;LDAF=0.1728;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 114469851 rs17137483 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1440;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 114480364 rs7716270 C T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.57;AMR_AF=0.23;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.08;LDAF=0.2980;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 114607246 rs141205772 T A 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0110;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 114961396 rs143393455 C A 100 PASS AA=c;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0092;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 115238716 rs41332950 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.26;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1732;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.05,-0.98 +5 115298378 rs10062297 C T 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.72;AVGPOST=0.9974;ERATE=0.0008;EUR_AF=0.77;LDAF=0.7805;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +5 115298475 rs12520255 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7779;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.07,-0.00 +5 115298518 rs12522632 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.81;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7759;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 115298977 rs1445708 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.26;AMR_AF=0.45;AN=2;ASN_AF=0.40;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3695;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 115339086 rs6594929 A G 100 PASS AA=a;AC=2;AF=0.83;AFR_AF=0.95;AMR_AF=0.82;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8263;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 115341611 rs10078748 G T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.81;AMR_AF=0.81;AN=2;ASN_AF=0.76;AVGPOST=0.9980;ERATE=0.0025;EUR_AF=0.81;LDAF=0.7958;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 115341638 rs10078759 G C 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.82;AMR_AF=0.81;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8002;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 115351150 rs10214076 T G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.76;AMR_AF=0.74;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6774;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 115351498 rs17485148 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.88;AMR_AF=0.80;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.8112;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 115358190 rs7714138 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1160;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 115426746 rs10065554 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.20;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0019;EUR_AF=0.67;LDAF=0.4834;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 115428334 rs1129494 G T 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.20;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.67;LDAF=0.4809;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 115428439 rs6894046 T A 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.20;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.67;LDAF=0.4809;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 115428444 rs10069656 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0836;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 115469773 rs2048220 C T 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.16;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.66;LDAF=0.4731;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 115628117 rs6866938 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.15;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1348;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 115813726 rs34966 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 115827407 rs154600 G A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.90;AMR_AF=0.81;AN=2;ASN_AF=0.77;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8287;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 115831092 rs32972 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.38;AMR_AF=0.45;AN=2;ASN_AF=0.29;AVGPOST=0.9791;ERATE=0.0116;EUR_AF=0.49;LDAF=0.4072;RSQ=0.9699;SNPSOURCE=LOWCOV,EXOME;THETA=0.0237;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 115840528 rs153644 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9936;ERATE=0.0005;EUR_AF=0.22;LDAF=0.2010;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 118484804 rs7734532 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.49;AMR_AF=0.58;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.48;LDAF=0.6253;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 118532034 rs6595178 A C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.61;AMR_AF=0.67;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.61;LDAF=0.7131;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 118691737 rs3797340 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.21;AN=2;ASN_AF=0.09;AVGPOST=0.9808;ERATE=0.0063;EUR_AF=0.20;LDAF=0.1676;RSQ=0.9440;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.69 +5 118691784 rs3797341 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.66;AMR_AF=0.33;AN=2;ASN_AF=0.09;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3240;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 118691832 rs3797342 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.23;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1837;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 118968423 rs328698 T G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.33;AMR_AF=0.39;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4239;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 118969960 rs328694 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.52;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4294;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 118970770 rs2434600 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.22;AMR_AF=0.38;AN=2;ASN_AF=0.10;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.41;LDAF=0.2809;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 120021819 rs1158194 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9849;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 121488506 rs35262183 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.30;AN=2;ASN_AF=0.41;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2736;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 121759040 rs144384727 A G 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 121761021 rs2242224 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.27;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2171;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 121767643 rs77615391 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.09;AMR_AF=0.26;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2107;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 121776301 rs2290987 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.27;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2335;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 122131082 rs2161391 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.49;AMR_AF=0.44;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3638;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 122359640 rs451195 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1581;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 122682348 rs1047438 A G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6974;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 122685727 rs1047437 C G 100 PASS AA=C;AC=2;AF=0.19;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.17;LDAF=0.1865;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 122685801 rs485847 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 122718736 rs6595440 G C 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.30;AMR_AF=0.40;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.48;LDAF=0.4374;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 122727026 rs6876883 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.51;AMR_AF=0.41;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4868;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 123976967 rs7703447 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.24;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.10;LDAF=0.1248;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 123983915 rs6862252 G T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.73;AMR_AF=0.47;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.54;LDAF=0.6285;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 123984763 rs7708070 C T 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.88;AMR_AF=0.63;AN=2;ASN_AF=0.76;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.75;LDAF=0.7621;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 125759396 rs201029255 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +5 125807911 rs61486463 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.11;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0542;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 125887685 rs2306617 C T 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.64;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7362;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 125887715 rs12514417 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0957;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 126171999 rs1051643 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.69;AMR_AF=0.68;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6835;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 126206303 rs34150806 C T 100 PASS AA=-;AC=2;AF=0.14;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1431;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 126746277 rs31483 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.93;LDAF=0.9665;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 126869270 rs233039 T G 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3889;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 126887569 rs7522 G A 100 PASS AA=A;AC=2;AF=0.40;AFR_AF=0.36;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4013;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 126993249 rs45074 G C 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.75;AMR_AF=0.64;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6571;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 126993263 rs248709 A T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0019;EUR_AF=0.64;LDAF=0.6580;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 126993282 rs2280170 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1170;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 127469859 rs2228112 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.72;AMR_AF=0.31;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3702;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 127512873 rs1559263 A C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.55;AMR_AF=0.28;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3254;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 127614472 rs190450 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.62;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7289;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 127622983 rs2042327 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.10;AMR_AF=0.54;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.61;LDAF=0.3725;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 127625559 rs56131649 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1389;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 127640783 rs60746914 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.70;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9959;ERATE=0.0018;EUR_AF=0.72;LDAF=0.7425;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 127680042 rs17676694 A T 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.0553;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 127685135 rs154001 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.60;AMR_AF=0.71;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7304;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 127685624 rs255690 C A 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2061;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 128301824 rs2526246 T A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.06;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2326;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 128301885 rs2526247 T G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.31;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.36;LDAF=0.2434;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 128301971 rs2577541 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.36;LDAF=0.2380;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 128365384 rs1898548 G T 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 128863471 rs6595908 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 129015452 rs30645 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.48;AN=2;ASN_AF=0.20;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.54;LDAF=0.3511;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 129072943 rs1465686 G T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.98;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9625;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +5 129240972 rs33917 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.22;AMR_AF=0.54;AN=2;ASN_AF=0.59;AVGPOST=0.8628;ERATE=0.0171;EUR_AF=0.53;LDAF=0.4645;RSQ=0.7888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.900:-0.89,-0.39,-0.33 +5 129519874 rs10066410 G A 100 PASS AA=A;AC=1;AF=0.91;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9151;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 129521126 rs2015018 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.20;AMR_AF=0.69;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5888;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 130498228 rs17165688 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.33;AMR_AF=0.07;AN=2;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0965;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 130500751 rs2278060 A C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.75;AMR_AF=0.29;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3680;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.25,-0.02,-5.00 +5 130500842 rs4696 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.33;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +5 130695152 rs11951274 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.44;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1266;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 130766662 rs1291602 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.97;AMR_AF=0.89;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.83;LDAF=0.8912;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 130788698 rs10054168 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.53;AMR_AF=0.36;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.27;LDAF=0.4018;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 130808293 rs9327613 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.09;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0366;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 130831365 rs40400 T C 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.80;AMR_AF=0.71;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.74;LDAF=0.6901;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 130840385 rs10063129 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.22;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0681;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 130982768 rs26006 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.38;AMR_AF=0.63;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.5786;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131006356 rs26007 T A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.80;AMR_AF=0.72;AN=2;ASN_AF=0.51;AVGPOST=0.9969;ERATE=0.0026;EUR_AF=0.77;LDAF=0.7010;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131008194 rs26008 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.91;AMR_AF=0.88;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.93;LDAF=0.8825;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131066577 rs7729787 A C 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.42;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5883;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 131066725 rs7730228 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131312327 rs370652 G T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.93;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8974;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131322494 rs77938 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.20;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.76;LDAF=0.5292;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 131325888 rs422130 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.68;AMR_AF=0.72;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6653;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131411460 rs25882 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3702;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131602166 rs1007602 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.62;AMR_AF=0.56;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5354;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131607721 rs10479001 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.18;AMR_AF=0.10;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0735;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131658085 rs270600 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9960;ERATE=0.0012;EUR_AF=1.00;LDAF=0.9916;RSQ=0.8231;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131663062 rs272893 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5850;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131670546 rs272879 C G 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.69;AMR_AF=0.68;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0026;EUR_AF=0.58;LDAF=0.5599;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131671662 rs12777 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0289;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131719999 rs4551059 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131819798 rs2070731 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.34;AMR_AF=0.32;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3346;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131819800 rs2070730 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.48;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3716;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131822055 rs9282762 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.46;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=0.9885;ERATE=0.0112;EUR_AF=0.34;LDAF=0.3568;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131822072 rs2070724 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.48;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3724;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131822224 rs9282761 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.48;AMR_AF=0.34;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3725;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131892979 rs4526098 G A 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9415;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 131924341 rs104895045 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0184;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131995843 rs1295686 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.77;LDAF=0.6120;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 131995964 rs20541 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.79;AMR_AF=0.68;AN=2;ASN_AF=0.66;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7317;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 132009710 rs2070874 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.50;AMR_AF=0.34;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.4274;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 132018132 rs2243289 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.30;AMR_AF=0.32;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3808;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 132018169 rs2243290 C A 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.40;AMR_AF=0.33;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.4059;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 132039132 rs2285700 C A 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.37;AMR_AF=0.57;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.4703;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 132046789 rs11740584 G C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.37;AMR_AF=0.57;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.71;LDAF=0.4699;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 132069847 rs9784600 G T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.61;AMR_AF=0.35;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.4529;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 132098242 rs30510 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8148;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 132150948 rs40470 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 132198199 rs254286 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.34;AMR_AF=0.51;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4539;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 132198287 rs254285 C G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.99;AMR_AF=0.81;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8159;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 132334252 rs3087646 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.57;AMR_AF=0.25;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3650;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 132408967 rs61755724 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 132535046 rs3749817 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2628;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 132535433 rs147873655 G T 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +5 132559950 rs2303671 T G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.74;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.26;LDAF=0.4206;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 132648331 rs2278232 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.36;AVGPOST=0.9994;ERATE=0.0009;EUR_AF=0.06;LDAF=0.1433;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 132736722 rs72805037 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0394;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 133316518 rs117231680 G A 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0357;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 133496649 rs75350593 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1678;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 133561589 rs3863186 G C 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.63;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.80;LDAF=0.6696;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 133902288 rs2044318 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.37;AMR_AF=0.30;AN=2;ASN_AF=0.11;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.28;LDAF=0.2573;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.20 +5 133909475 rs329322 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.87;AMR_AF=0.91;AN=2;ASN_AF=0.69;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.84;LDAF=0.8200;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 134033777 rs246341 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9874;RSQ=0.9737;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 134331921 rs299364 T G 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.15;AMR_AF=0.37;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3824;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 134343661 rs10044000 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3012;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 134343799 rs177252 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.63;AMR_AF=0.40;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 134344497 rs299376 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9392;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 134364518 rs479632 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.49;AVGPOST=0.9962;ERATE=0.0007;EUR_AF=0.28;LDAF=0.3184;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 135178124 rs2304075 T C 100 PASS AA=t;AC=1;AF=0.75;AFR_AF=0.77;AMR_AF=0.70;AN=2;ASN_AF=0.66;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.83;LDAF=0.7481;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 135186075 rs2304077 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.71;AMR_AF=0.60;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6453;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 135188214 rs2304078 G C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.77;AMR_AF=0.70;AN=2;ASN_AF=0.66;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7433;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 135283222 rs977691 T A 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2299;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 135287029 rs31517 T C 100 PASS AA=t;AC=2;AF=0.63;AFR_AF=0.56;AMR_AF=0.67;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6266;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 135382989 rs1442 G C 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3460;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 136961400 rs2074344 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1828;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 136961413 rs2074345 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1828;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 136961566 rs17171525 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0302;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 136969793 rs2301708 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.43;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2261;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 136975687 rs2074348 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.47;AMR_AF=0.30;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3958;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 137027953 rs2301710 A T 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.84;AMR_AF=0.76;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.8304;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +5 137028029 rs2905608 T C 100 PASS AA=t;AC=2;AF=0.83;AFR_AF=0.84;AMR_AF=0.76;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.8305;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137206560 rs41431944 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137241856 rs700605 T C 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.60;AMR_AF=0.81;AN=2;ASN_AF=0.94;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8038;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137244517 rs1880458 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.61;AMR_AF=0.72;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.76;LDAF=0.7761;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137257288 rs4304074 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9857;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137259179 rs12187140 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9857;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137259251 rs13188503 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9858;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137281708 rs1125979 A C 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.61;AMR_AF=0.73;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137295823 rs9327802 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.61;AMR_AF=0.73;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7792;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137323117 rs7714536 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.61;AMR_AF=0.73;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7793;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +5 137347498 rs10064910 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9954;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137426447 rs6596422 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.59;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.49;LDAF=0.4684;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 137426768 rs12520886 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.37;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1772;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 137475787 rs423258 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2966;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 137476416 rs412051 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9854;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137485292 rs217270 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9945;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137486426 rs217272 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.32;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2295;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 137665323 rs3734166 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.47;AMR_AF=0.27;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.30;LDAF=0.4069;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 137708434 rs4835678 C T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6577;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137717213 rs10073922 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2880;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 137717265 rs6865472 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9890;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137754695 rs7726234 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.55;AMR_AF=0.62;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6599;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 137763615 rs2240334 A C 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2880;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 137802404 rs11743810 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.56;AN=2;ASN_AF=0.16;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.54;LDAF=0.3927;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 137892170 rs10117 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.80;AMR_AF=0.37;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6037;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 137902339 rs1042665 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.23;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.25;LDAF=0.4035;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 138148036 rs28363396 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0169;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 138221989 rs288028 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.19;AMR_AF=0.26;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1819;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 138264895 rs28363483 C T 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0004;LDAF=0.0043;RSQ=0.9713;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 138266546 rs1059110 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.45;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2458;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 138456815 rs3088052 T C 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.70;AMR_AF=0.46;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4265;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 138643062 rs12153162 T A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.19;AMR_AF=0.52;AN=2;ASN_AF=0.19;AVGPOST=0.9544;ERATE=0.0331;EUR_AF=0.56;LDAF=0.3769;RSQ=0.9270;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 138713959 rs6596474 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +5 138773090 rs10900864 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.15;AMR_AF=0.62;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.65;LDAF=0.4376;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 138775173 rs3923059 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.65;AMR_AF=0.72;AN=2;ASN_AF=0.38;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.71;LDAF=0.6113;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 138856982 rs7380824 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.28;AMR_AF=0.25;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2655;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 138857919 rs1131769 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.85;LDAF=0.8595;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 138857925 rs78233829 C G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2519;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 138861078 rs11554776 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.15;LDAF=0.2006;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 138861146 rs7447927 C G 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.11;AMR_AF=0.52;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.4487;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 139574050 rs11538394 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.21;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2085;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 139740454 rs34507975 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=0.9955;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2195;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.49 +5 139741370 rs717097 C A 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.24;AMR_AF=0.46;AN=2;ASN_AF=0.57;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4390;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 139745154 rs6860077 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.58;AMR_AF=0.75;AN=2;ASN_AF=0.84;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.72;LDAF=0.7243;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 139936760 rs250426 G T 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.31;AMR_AF=0.71;AN=2;ASN_AF=0.84;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6592;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 139936980 rs250427 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.57;AMR_AF=0.75;AN=2;ASN_AF=0.83;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7188;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +5 139940233 rs250431 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.31;AMR_AF=0.71;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6522;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 139940302 rs1800882 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.37;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.01;LDAF=0.1164;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 139941228 rs250430 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.95;AMR_AF=0.88;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8991;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 139941318 rs171632 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.56;AMR_AF=0.75;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7176;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140021482 rs11554680 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2505;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140021858 rs12153256 A T 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2502;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140023238 rs17208187 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.25;AN=2;ASN_AF=0.29;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2271;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140023818 rs753279 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.50;AVGPOST=0.9926;ERATE=0.0073;EUR_AF=0.44;LDAF=0.4405;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 140027216 rs778593 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.28;AMR_AF=0.38;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3861;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140037272 rs778596 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4199;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140048209 rs2251860 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.64;AMR_AF=0.47;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4941;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140048267 rs2530245 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9557;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140048544 rs2286394 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.28;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2152;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140051983 rs2530243 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.44;AVGPOST=0.9978;ERATE=0.0011;EUR_AF=0.44;LDAF=0.4221;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140054257 rs58302597 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2180;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140073883 rs6883035 G A 100 PASS AA=g;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2181;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140077699 rs2530234 A G 100 PASS AA=N;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9566;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 140209467 rs7710794 T G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.73;AMR_AF=0.56;AN=2;ASN_AF=0.55;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5846;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 140236950 rs251362 C G 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.37;AMR_AF=0.53;AN=2;ASN_AF=0.46;AVGPOST=0.9926;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4750;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140237109 rs251363 T G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.70;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9730;ERATE=0.0005;EUR_AF=0.61;LDAF=0.5892;RSQ=0.9651;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.25,-0.35,-4.70 +5 140250252 rs251372 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.45;AVGPOST=0.9924;ERATE=0.0005;EUR_AF=0.47;LDAF=0.4457;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.96,-0.05,-5.00 +5 140255792 rs251377 C A 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.49;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4366;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140263290 rs251380 T G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.49;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6416;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140307284 rs155361 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5760;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 140307746 rs155820 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.51;AVGPOST=0.9928;ERATE=0.0023;EUR_AF=0.32;LDAF=0.3359;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 140307969 rs246074 C G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.68;AMR_AF=0.52;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5795;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 140346468 rs155364 T A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.72;AMR_AF=0.52;AN=2;ASN_AF=0.61;AVGPOST=0.9945;ERATE=0.0006;EUR_AF=0.52;LDAF=0.5898;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +5 140346712 rs155808 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.31;AN=2;ASN_AF=0.53;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3507;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140347053 rs155807 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.31;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3469;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140480321 rs183428005 T C 100 PASS AA=T;AC=2;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140516795 rs246726 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.70;AMR_AF=0.73;AN=2;ASN_AF=0.83;AVGPOST=0.8220;ERATE=0.0467;EUR_AF=0.77;LDAF=0.7245;RSQ=0.6236;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +5 140517174 rs400562 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.79;AMR_AF=0.79;AN=2;ASN_AF=0.88;AVGPOST=0.9711;ERATE=0.0048;EUR_AF=0.82;LDAF=0.8194;RSQ=0.9292;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140531175 rs246707 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.0725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140531667 rs246704 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.25;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9344;ERATE=0.0138;EUR_AF=0.02;LDAF=0.1035;RSQ=0.7354;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.750:-1.95,-0.01,-2.09 +5 140553822 rs202165393 C A 100 PASS AA=N;AC=2;AF=0.03;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9873;ERATE=0.0159;EUR_AF=0.03;LDAF=0.0311;RSQ=0.8506;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140553893 rs17844453 T C 100 PASS AA=N;AC=2;AF=0.02;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9833;ERATE=0.0126;EUR_AF=0.01;LDAF=0.0286;RSQ=0.7867;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.97,-0.05 +5 140554006 rs2907329 C G 100 PASS AA=c;AC=2;AF=0.61;AFR_AF=0.66;AMR_AF=0.60;AN=2;ASN_AF=0.66;AVGPOST=0.9666;ERATE=0.0135;EUR_AF=0.54;LDAF=0.6084;RSQ=0.9439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:1.750:-5.00,-0.64,-0.11 +5 140559596 rs2697541 T G 100 PASS AA=a;AC=2;AF=0.90;AFR_AF=0.96;AMR_AF=0.89;AN=2;ASN_AF=0.91;AVGPOST=0.9951;ERATE=0.0007;EUR_AF=0.84;LDAF=0.8943;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.00,-0.05 +5 140559914 rs2740583 T C 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2136;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140563574 rs2697534 A G 100 PASS AA=a;AC=2;AF=0.37;AFR_AF=0.29;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=0.9844;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3684;RSQ=0.9765;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140563616 rs17844647 G A 100 PASS AA=g;AC=2;AF=0.37;AFR_AF=0.28;AMR_AF=0.42;AN=2;ASN_AF=0.33;AVGPOST=0.9811;ERATE=0.0010;EUR_AF=0.43;LDAF=0.3676;RSQ=0.9705;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +5 140563658 rs2697533 A G 100 PASS AA=N;AC=2;AF=0.35;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.32;AVGPOST=0.9709;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3508;RSQ=0.9558;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +5 140563763 rs17844658 C A 100 PASS AA=c;AC=2;AF=0.32;AFR_AF=0.25;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9577;ERATE=0.0010;EUR_AF=0.36;LDAF=0.3181;RSQ=0.9345;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.42,-0.50,-0.17 +5 140682891 rs3749779 A C 100 PASS AA=A;AC=2;AF=0.05;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0457;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140720543 rs147941013 C T 100 PASS AA=.;AC=2;AF=0.07;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.09;AVGPOST=0.9928;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0658;RSQ=0.9558;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-4.10,-0.55,-0.14 +5 140725828 rs7736541 C T 100 PASS AA=.;AC=2;AF=0.53;AFR_AF=0.80;AMR_AF=0.61;AN=2;ASN_AF=0.34;AVGPOST=0.9889;ERATE=0.0012;EUR_AF=0.45;LDAF=0.5226;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140772427 rs726684 T G 100 PASS AA=.;AC=2;AF=0.17;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1724;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +5 140774288 rs4912749 T C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9972;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9971;RSQ=0.5667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 140793007 rs4912751 A G 100 PASS AA=g;AC=2;AF=0.54;AFR_AF=0.86;AMR_AF=0.60;AN=2;ASN_AF=0.33;AVGPOST=0.9948;ERATE=0.0045;EUR_AF=0.45;LDAF=0.5340;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140797630 rs2015825 G T 100 PASS AA=g;AC=2;AF=0.52;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.33;AVGPOST=0.9847;ERATE=0.0044;EUR_AF=0.45;LDAF=0.5145;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +5 140810773 rs17097300 G A 100 PASS AA=g;AC=2;AF=0.07;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0667;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140856265 rs2075661 G C 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.20;AMR_AF=0.32;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2123;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140857798 rs1423148 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.85;AMR_AF=0.60;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5333;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140869003 rs1002519 T C 100 PASS AA=T;AC=2;AF=0.20;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2048;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140869311 rs185263705 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140870516 rs2074912 A G 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.14;AMR_AF=0.33;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1970;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140870949 rs918558 G T 100 PASS AA=T;AC=2;AF=0.20;AFR_AF=0.14;AMR_AF=0.33;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1970;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 140890770 rs2233613 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1192;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 140955777 rs2302103 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.85;AMR_AF=0.69;AN=2;ASN_AF=0.35;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.60;LDAF=0.6039;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141014494 rs2530223 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.85;AMR_AF=0.69;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6038;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141016276 rs32954 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141016288 rs1421896 T G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.90;AMR_AF=0.71;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6208;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141018454 rs11741647 C G 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1280;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 141019110 rs14251 C A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.60;AMR_AF=0.40;AN=2;ASN_AF=0.16;AVGPOST=0.9987;ERATE=0.0024;EUR_AF=0.38;LDAF=0.3741;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 141019569 rs17855844 G C 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1610;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 141019830 rs11742646 C G 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1619;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 141029072 rs11739451 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1168;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 141036337 rs7703648 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.68;AMR_AF=0.49;AN=2;ASN_AF=0.41;AVGPOST=0.9992;ERATE=0.0017;EUR_AF=0.44;LDAF=0.4974;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 141049407 rs3763120 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4318;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 141051236 rs12514851 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1705;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 141059649 rs417503 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7710;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141059868 rs11167756 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.49;AMR_AF=0.51;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4725;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 141243646 rs3797054 A G 100 PASS AA=a;AC=1;AF=0.37;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.59;AVGPOST=0.9987;ERATE=0.0022;EUR_AF=0.32;LDAF=0.3735;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 141244356 rs3822357 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0913;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 141325249 rs105633 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9875;RSQ=0.9716;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141334921 rs2434322 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.29;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.12;LDAF=0.1380;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 141335241 rs164073 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.93;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7459;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141335284 rs164074 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.34;AMR_AF=0.64;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5955;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141336264 rs164075 G T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.93;AMR_AF=0.67;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.7261;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141337126 rs164076 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.34;AMR_AF=0.61;AN=2;ASN_AF=0.86;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5784;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141337225 rs164077 A G 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.50;AMR_AF=0.82;AN=2;ASN_AF=0.98;AVGPOST=0.9925;ERATE=0.0006;EUR_AF=0.76;LDAF=0.7678;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0102;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 141364511 rs252099 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.94;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8981;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 142254679 rs185200 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.88;AMR_AF=0.43;AN=2;ASN_AF=0.86;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.32;LDAF=0.6035;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 142416741 rs192194 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6591;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 142421415 rs2270068 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8652;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +5 142593652 rs258819 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9931;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +5 143200053 rs161557 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.27;AMR_AF=0.26;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2793;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 145197411 rs6870210 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.20;AMR_AF=0.58;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.4506;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 145246085 rs2569006 T G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.91;AMR_AF=0.69;AN=2;ASN_AF=0.70;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.58;LDAF=0.7027;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 145252574 rs10037373 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.63;AMR_AF=0.64;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6180;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 145393364 rs758037 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.44;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6135;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 145439647 rs2962525 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 145442133 rs11435 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.28;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.14;LDAF=0.1579;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 145442203 rs1056149 G C 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.50;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6335;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 145838440 rs11743333 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.31;AMR_AF=0.56;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4282;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 145851184 rs111857100 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0394;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 145887453 rs12186370 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0393;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 145890028 rs4705103 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9688;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 145890228 rs1802027 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0525;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 145895558 rs17104742 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 146619206 rs4705132 G C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.63;AMR_AF=0.68;AN=2;ASN_AF=0.29;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.57;LDAF=0.5268;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 146775311 rs2288808 A T 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3364;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 146777188 rs2304045 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.63;AMR_AF=0.49;AN=2;ASN_AF=0.56;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.37;LDAF=0.4976;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 146971253 rs7449194 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9109;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147020419 rs1529686 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.32;AMR_AF=0.29;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.3281;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 147024509 rs2116765 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.49;AMR_AF=0.30;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.3332;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 147204192 rs11319 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0672;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 147449855 rs1423001 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.97;AMR_AF=0.76;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7819;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147475386 rs6892205 A G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.48;AMR_AF=0.62;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4886;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147475488 rs11958432 A G 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4455;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147477551 rs34482796 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.28;AMR_AF=0.60;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4423;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147478785 rs1422991 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.26;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4365;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147479991 rs2303061 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4285;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147480007 rs2303062 A G 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4285;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147480027 rs2303063 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4286;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147480112 rs2303065 T C 100 PASS AA=t;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4287;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147480868 rs2303066 G A 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4292;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147480955 rs2303067 A G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4291;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147481018 rs2303068 G A 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4292;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147481430 rs6896303 A G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4290;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147486677 rs880687 C A 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.21;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4258;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147488367 rs2303071 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.46;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5745;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147498019 rs3777134 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.36;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4945;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147498523 rs3764926 T C 100 PASS AA=t;AC=2;AF=0.51;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9957;ERATE=0.0035;EUR_AF=0.56;LDAF=0.5079;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147498652 rs9325073 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.86;AMR_AF=0.76;AN=2;ASN_AF=0.91;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7996;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147498669 rs9325074 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.86;AMR_AF=0.76;AN=2;ASN_AF=0.91;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7996;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147499616 rs17704908 C T 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.36;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4944;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147499670 rs33920397 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.36;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4946;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147505116 rs3764930 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.21;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4576;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147510776 rs6895434 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5114;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147510866 rs2400478 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5114;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147554889 rs10052031 A C 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.63;AMR_AF=0.50;AN=2;ASN_AF=0.43;AVGPOST=0.9975;ERATE=0.0025;EUR_AF=0.61;LDAF=0.5487;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 147593497 rs12186491 C A 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.26;AMR_AF=0.88;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.6971;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 147693826 rs3749690 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.54;AMR_AF=0.32;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3743;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 147781732 rs34685718 T G 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2678;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 147788798 rs10077690 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2021;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 147803557 rs11168047 G T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.73;AMR_AF=0.40;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4753;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 147805120 rs10043775 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.32;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2568;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 147819366 rs10051223 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.73;AMR_AF=0.39;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4749;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 147889623 rs3734119 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.39;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2048;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 147928225 rs2278392 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.42;AMR_AF=0.21;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2367;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 148206348 rs1042711 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.84;AMR_AF=0.73;AN=2;ASN_AF=0.92;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.59;LDAF=0.7555;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +5 148206375 rs1801704 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.84;AMR_AF=0.73;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.59;LDAF=0.7561;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 148206440 rs1042713 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.53;AMR_AF=0.47;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4699;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 148206473 rs1042714 G C 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.84;AMR_AF=0.73;AN=2;ASN_AF=0.93;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.59;LDAF=0.7607;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 148207447 rs1042719 G C 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3545;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0100;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 148207633 rs1042720 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.59;AMR_AF=0.39;AN=2;ASN_AF=0.65;AVGPOST=0.9977;ERATE=0.0090;EUR_AF=0.32;LDAF=0.4755;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 148407708 rs1432794 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9890;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 148407945 rs17722227 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0517;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 148408101 rs1432793 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.57;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9982;ERATE=0.0009;EUR_AF=0.48;LDAF=0.4277;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 148422274 rs17722293 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0604;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 148580025 rs6580602 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.76;AMR_AF=0.70;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6595;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 148725199 rs352347 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.75;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5049;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +5 149000039 rs7733761 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.46;AMR_AF=0.60;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5969;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149001551 rs4629585 A C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.36;AMR_AF=0.42;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.34;LDAF=0.4077;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149212243 rs7732671 G C 100 PASS AA=g;AC=1;AF=0.10;AFR_AF=0.16;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1037;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149212471 rs17572019 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0669;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149219653 rs150637009 G A 100 PASS AA=G;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.0040;LDAF=0.0037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149247393 rs202098417 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +5 149360630 rs78676079 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.03;LDAF=0.0105;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149360877 rs30832 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9972;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149374932 rs10875553 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.56;AMR_AF=0.74;AN=2;ASN_AF=0.67;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.77;LDAF=0.6923;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149433596 rs2066934 T G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.89;AMR_AF=0.72;AN=2;ASN_AF=0.66;AVGPOST=0.9694;ERATE=0.0033;EUR_AF=0.68;LDAF=0.7275;RSQ=0.9468;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 149433597 rs2066933 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.84;AMR_AF=0.71;AN=2;ASN_AF=0.64;AVGPOST=0.9648;ERATE=0.0173;EUR_AF=0.66;LDAF=0.7036;RSQ=0.9445;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 149435759 rs216136 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.11;AMR_AF=0.46;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4201;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149437190 rs216138 C G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.97;AMR_AF=0.76;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0017;EUR_AF=0.76;LDAF=0.7885;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149457678 rs2228422 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.31;AMR_AF=0.38;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.3798;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149460553 rs216123 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.26;AMR_AF=0.38;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0015;EUR_AF=0.57;LDAF=0.3465;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149495395 rs246388 T C 100 PASS AA=t;AC=1;AF=0.29;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2852;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +5 149497133 rs62620044 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=0.06;LDAF=0.0643;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149497177 rs246391 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.34;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2985;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149499672 rs246395 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.29;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0019;EUR_AF=0.30;LDAF=0.2263;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149509270 rs1864972 A G 100 PASS AA=g;AC=1;AF=0.78;AFR_AF=0.92;AMR_AF=0.74;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.65;LDAF=0.7777;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149515074 rs740750 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.30;AMR_AF=0.55;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4581;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149546426 rs2302274 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.76;AMR_AF=0.43;AN=2;ASN_AF=0.55;AVGPOST=0.9391;ERATE=0.0064;EUR_AF=0.44;LDAF=0.5390;RSQ=0.9082;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.050:-2.89,-0.26,-0.34 +5 149546828 rs2302275 C G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.76;AMR_AF=0.44;AN=2;ASN_AF=0.54;AVGPOST=0.9770;ERATE=0.0012;EUR_AF=0.46;LDAF=0.5421;RSQ=0.9660;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.05,-0.93,-5.00 +5 149576233 rs2270145 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.13;AMR_AF=0.41;AN=2;ASN_AF=0.47;AVGPOST=0.9787;ERATE=0.0198;EUR_AF=0.53;LDAF=0.4086;RSQ=0.9742;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149576273 rs2270146 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.20;AMR_AF=0.39;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.51;LDAF=0.4040;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149580819 rs3733680 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.25;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3556;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149582103 rs2240788 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.47;LDAF=0.3633;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149583300 rs2240793 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.59;AMR_AF=0.77;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6335;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149583336 rs2240794 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.86;AMR_AF=0.80;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7587;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149584197 rs17652561 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.34;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1828;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149584341 rs6878880 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0007;EUR_AF=0.98;LDAF=0.9909;RSQ=0.8793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149584981 rs4705425 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.56;AMR_AF=0.42;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0024;EUR_AF=0.51;LDAF=0.4804;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 149585025 rs4705426 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149588926 rs78984787 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0519;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149602280 rs55976097 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.39;AMR_AF=0.39;AN=2;ASN_AF=0.16;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3154;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149602608 rs2241694 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=0.82;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9164;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149602824 rs2241695 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.17;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4827;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-2.24,-0.00,-5.00 +5 149627423 rs7711562 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.89;AMR_AF=0.51;AN=2;ASN_AF=0.52;AVGPOST=0.9897;ERATE=0.0016;EUR_AF=0.44;LDAF=0.5734;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0111;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149644597 rs891938 T G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149677851 rs6579784 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +5 149772280 rs1136103 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.12;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1083;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149827132 rs17656930 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0183;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 149914401 rs2545341 T C 100 PASS AA=t;AC=2;AF=0.68;AFR_AF=0.77;AMR_AF=0.68;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.65;LDAF=0.6819;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 149914631 rs2909809 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.46;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2710;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.73,-0.00 +5 149919739 rs1290147 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.96;AMR_AF=0.73;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7793;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150051958 rs194134 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9950;RSQ=0.9754;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150407456 rs8177447 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.63;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8190;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150413406 rs2233305 A C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.50;AMR_AF=0.81;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7806;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150425467 rs2233299 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1691;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150483095 rs4958892 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.39;AMR_AF=0.46;AN=2;ASN_AF=0.60;AVGPOST=0.9882;ERATE=0.0048;EUR_AF=0.34;LDAF=0.4401;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0211;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150489390 rs1133202 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.84;AMR_AF=0.73;AN=2;ASN_AF=0.69;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7553;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150498981 rs2303022 C G 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.44;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3477;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150506086 rs2303029 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.24;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1788;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150564975 rs248428 T C 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.47;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4237;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150565008 rs248427 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.47;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4218;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150565724 rs248426 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.49;AMR_AF=0.42;AN=2;ASN_AF=0.36;AVGPOST=0.9938;ERATE=0.0096;EUR_AF=0.45;LDAF=0.4310;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150603444 rs248461 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.27;LDAF=0.3387;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150632832 rs1048719 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0846;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150639409 rs153477 A G 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.54;AMR_AF=0.70;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6375;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150639439 rs153478 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.8144;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150647012 rs1048723 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.11;AMR_AF=0.38;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2618;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150660769 rs1368393 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5324;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150660794 rs1368394 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.74;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5192;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150663565 rs1347147 A C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5324;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150666933 rs375396 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2545;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150667016 rs978012 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5348;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150696447 rs369907 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6517;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150696498 rs428064 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3263;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150696540 rs431240 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6517;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.27,-0.00 +5 150723806 rs192192 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.26;AMR_AF=0.62;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150886725 rs7723266 G A 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.94;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.9008;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150886882 rs1105168 G A 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.87;AMR_AF=0.69;AN=2;ASN_AF=0.82;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.55;LDAF=0.7133;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150887200 rs41290577 A G 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1547;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150891733 rs2304028 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.69;AMR_AF=0.79;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7852;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150901111 rs3822699 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.62;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9986;ERATE=0.0025;EUR_AF=0.72;LDAF=0.7681;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150901261 rs6650971 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.60;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9991;ERATE=0.0007;EUR_AF=0.72;LDAF=0.7631;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150901300 rs3734046 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.58;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7602;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150901597 rs3734047 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1335;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150901613 rs2053028 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.63;AMR_AF=0.79;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7719;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150901630 rs3734049 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1335;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150905398 rs3734051 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2191;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150908813 rs2304024 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1325;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150914184 rs1432643 A T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.53;AMR_AF=0.66;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6365;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150923405 rs6892335 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9292;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150942919 rs6872614 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9968;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150942969 rs2304053 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3894;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150943085 rs2304054 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.44;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4337;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150945483 rs3734055 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.41;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.49;LDAF=0.4278;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150945518 rs3734056 C T 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0271;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 150945699 rs10085060 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4438;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150945862 rs3734057 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4438;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150945931 rs3734058 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=0.9947;ERATE=0.0091;EUR_AF=0.50;LDAF=0.4553;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150946132 rs3734059 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4433;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150946436 rs9324700 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4433;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150946773 rs1432862 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4415;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150946966 rs1465690 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.90;AMR_AF=0.80;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.93;LDAF=0.8642;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 150947719 rs3734060 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.48;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4426;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 150948537 rs1469680 T C 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.92;AMR_AF=0.80;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8679;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 151043103 rs1053411 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2048;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 151052659 rs1978707 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.80;AMR_AF=0.63;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.57;LDAF=0.6173;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 151054137 rs2116780 A C 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.29;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2048;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 151169881 rs2053062 C T 100 PASS AA=C;AC=2;AF=0.02;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0196;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 151771817 rs1363422 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9982;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 151771838 rs4958531 T C 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1307;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 151771852 rs4958532 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1308;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 151772055 rs1895245 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1307;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 151775064 rs4958535 C G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1307;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 153029960 rs707176 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.32;LDAF=0.1850;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 153144216 rs3813470 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.65;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6961;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 153372525 rs1057772 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.56;AMR_AF=0.65;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.63;LDAF=0.6792;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 153413390 rs2578377 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.7056;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 153429459 rs690592 T C 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.61;AMR_AF=0.67;AN=2;ASN_AF=0.86;AVGPOST=0.9877;ERATE=0.0057;EUR_AF=0.64;LDAF=0.6914;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 153432733 rs2578386 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.7048;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 153432970 rs2255493 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.7048;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 153789078 rs6580077 C G 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.45;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3342;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 154268902 rs816739 C T 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9520;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 154271948 rs816736 G A 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9520;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 154278888 rs816740 C T 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9520;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 154287115 rs6580119 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9602;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 154291409 rs1974777 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.67;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8304;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 154291496 rs1974776 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.67;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8304;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 154300940 rs348739 A C 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.57;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8071;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 154306972 rs2258437 T C 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.67;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8300;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 155771579 rs1801193 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.25;AMR_AF=0.45;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4931;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 156376703 rs6873053 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9648;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156459856 rs34670839 C T 100 PASS AA=C;AC=2;AF=0.19;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1918;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156464212 rs4704837 T G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.94;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9127;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156464242 rs2036402 T C 100 PASS AA=T;AC=2;AF=0.19;AFR_AF=0.03;AMR_AF=0.32;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1928;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156479323 rs1553318 G C 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.35;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9989;ERATE=0.0011;EUR_AF=0.66;LDAF=0.6331;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156479424 rs1553317 A C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9004;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156479426 rs12522248 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.13;AMR_AF=0.35;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2303;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156479509 rs1553316 A G 100 PASS AA=a;AC=2;AF=0.90;AFR_AF=0.89;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9004;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156482459 rs1809941 G T 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.87;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8971;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156531736 rs1036199 C A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.82;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8693;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156593062 rs144784850 T G 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.850:-5.00,0.00,-5.00 +5 156644939 rs246747 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.17;AVGPOST=0.9991;ERATE=0.0013;EUR_AF=0.29;LDAF=0.2117;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 156650052 rs2288502 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0699;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 156679576 rs27341 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.64;AMR_AF=0.39;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4220;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 156770049 rs17054522 G C 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0190;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 156898690 rs6860507 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.41;AMR_AF=0.46;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.48;LDAF=0.5234;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 156899290 rs9313607 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.79;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6865;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 156899869 rs4704870 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9823;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 156936364 rs1422795 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.64;AMR_AF=0.44;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3775;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 158589898 rs2304056 C G 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.84;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5525;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 158697481 rs3734104 C G 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.32;AMR_AF=0.55;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5077;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 158750013 rs2288831 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.36;AMR_AF=0.32;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3391;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 159505208 rs4360078 C A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6848;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.55,-0.00 +5 159659273 rs1130435 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.45;AMR_AF=0.43;AN=2;ASN_AF=0.49;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4372;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 159665599 rs2277954 G A 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.45;AMR_AF=0.73;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.6979;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 159831803 rs2961940 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.30;AMR_AF=0.37;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2879;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 159835658 rs2961944 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6151;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 159841493 rs79791419 A T 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.08;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0014;EUR_AF=0.11;LDAF=0.0705;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 159851211 rs2910203 G C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.93;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8638;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 160044855 rs1363199 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.66;AMR_AF=0.73;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7568;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 160049355 rs2032804 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.80;AMR_AF=0.73;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7900;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +5 160097429 rs3828604 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8725;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 160097453 rs1990888 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8723;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 160097496 rs958912 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.91;AMR_AF=0.72;AN=2;ASN_AF=0.90;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.81;LDAF=0.8405;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 160097632 rs958911 G A 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.91;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8720;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 160721319 rs2229944 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1089;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 160763822 rs252958 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0523;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 161119071 rs12522663 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9735;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 161128627 rs34907804 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0722;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 161128761 rs4277944 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9694;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 161281245 rs35166395 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.08;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2492;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 161292685 rs41304896 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2043;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 161309752 rs11135172 T G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2073;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +5 161524670 rs61735412 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0132;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +5 162866548 rs299322 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.54;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4292;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 162868905 rs2069352 A C 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0055;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 162887650 rs2303076 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2130;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.22 +5 162890953 rs380101 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 162896650 rs299284 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0796;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 162896856 rs299283 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.54;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4282;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 162902516 rs299290 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3227;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 162902707 rs299291 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.54;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4278;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 162909716 rs299295 C T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.26;AMR_AF=0.21;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.25;LDAF=0.1953;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 162910199 rs184181 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 162918073 rs148720461 G A 100 PASS AA=g;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 162940999 rs17061795 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0887;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 162944709 rs7733775 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.19;AMR_AF=0.61;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5512;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 167798585 rs2287703 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.74;AMR_AF=0.71;AN=2;ASN_AF=0.74;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6744;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 167837030 rs112514380 G C 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0201;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 167850748 rs12054944 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.67;AMR_AF=0.59;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.43;LDAF=0.6577;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 167868779 rs3733981 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.78;AMR_AF=0.44;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.5123;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 167868809 rs3733980 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.78;AMR_AF=0.44;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.30;LDAF=0.5119;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 167891830 rs3203960 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.40;AMR_AF=0.36;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3181;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 167894984 rs2305724 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.23;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.1874;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 167913510 rs244903 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.7044;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.06,-0.00 +5 167919623 rs184957 T A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.70;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6577;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 167921047 rs2432642 C G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6645;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +5 167922463 rs2305730 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0850;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 167937607 rs2290629 G A 100 PASS AA=g;AC=1;AF=0.07;AFR_AF=0.0020;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0736;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 167943827 rs653568 G A 100 PASS AA=a;AC=2;AF=0.79;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.58;LDAF=0.7940;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 167946076 rs2305736 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1911;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 168098235 rs2277933 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.36;AN=2;ASN_AF=0.37;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3467;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 168098463 rs292486 A G 100 PASS AA=a;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9834;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.36,-0.00 +5 168123313 rs1864954 A G 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1472;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 168134959 rs112611140 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0124;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 168176517 rs2304035 A G 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.58;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4839;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 168179922 rs10039601 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.43;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2829;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 168180081 rs10036727 C T 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5625;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 168189501 rs2288796 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.63;AMR_AF=0.56;AN=2;ASN_AF=0.64;AVGPOST=0.9997;ERATE=0.0022;EUR_AF=0.51;LDAF=0.5787;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 168212951 rs891921 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9411;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 168213007 rs2292143 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.34;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1933;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 168233413 rs3797716 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.48;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5343;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 168250350 rs924875 C G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.79;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.38;LDAF=0.4950;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 168620435 rs11744813 C A 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.19;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2162;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 169021233 rs142049273 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0005;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169021610 rs4493692 C T 100 PASS AA=t;AC=1;AF=0.64;AFR_AF=0.53;AMR_AF=0.59;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6435;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169028481 rs3797713 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.57;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6545;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169031150 rs3777084 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.57;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6545;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169031218 rs2042248 G T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.63;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169122803 rs3734099 C A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.36;AMR_AF=0.09;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1682;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169129284 rs2306560 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.38;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.23;LDAF=0.2573;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 169267784 rs261623 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.68;AMR_AF=0.39;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4097;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 169435713 rs2287727 A C 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0012;EUR_AF=0.28;LDAF=0.2505;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169454831 rs13175232 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.58;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4520;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169454833 rs13157227 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.58;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4520;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169454941 rs9791113 C G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.58;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4520;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169461399 rs3763047 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.60;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.33;LDAF=0.4530;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169461547 rs3763048 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.61;AMR_AF=0.34;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.35;LDAF=0.4621;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 169469165 rs73800274 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0206;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 169504743 rs1045168 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.38;AMR_AF=0.30;AN=2;ASN_AF=0.10;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.34;LDAF=0.2805;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 169535522 rs10063424 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9356;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 169661994 rs957998 G C 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.56;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5341;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +5 169685163 rs315717 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.69;AMR_AF=0.58;AN=2;ASN_AF=0.56;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5676;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 169689604 rs395407 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=0.94;AVGPOST=0.9881;ERATE=0.0026;EUR_AF=0.86;LDAF=0.9101;RSQ=0.9440;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +5 169695446 rs2292254 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9215;ERATE=0.0034;EUR_AF=0.43;LDAF=0.4467;RSQ=0.8836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-3.07,-0.47,-0.18 +5 169697707 rs315745 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.44;AMR_AF=0.53;AN=2;ASN_AF=0.85;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5713;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 169702390 rs2271146 C A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0010;EUR_AF=0.53;LDAF=0.3310;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 169715038 rs315721 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.42;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3410;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 170215638 rs10036156 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.55;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2184;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 170215670 rs7725726 G A 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.55;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2184;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 170221185 rs6884917 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.83;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5141;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 170224530 rs975061 A T 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.15;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0361;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 170239112 rs1063310 C A 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.15;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2577;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 170319575 rs79372097 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.12;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0288;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 170345708 rs112213519 A G 100 PASS AA=a;AC=1;AF=0.03;AFR_AF=0.12;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0288;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 170610273 rs6555936 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.69;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7435;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 170736824 rs117020618 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1136;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +5 170819887 rs3830035 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.41;AMR_AF=0.41;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4333;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 170883734 rs34347344 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.11;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.03;LDAF=0.0599;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 171480055 rs4569891 G A 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.39;AMR_AF=0.67;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.60;LDAF=0.6057;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 171533629 rs2306963 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0007;EUR_AF=0.75;LDAF=0.7573;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.45,-0.00 +5 171533656 rs2306962 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.41;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9979;ERATE=0.0051;EUR_AF=0.74;LDAF=0.6934;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 171554396 rs62641681 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0160;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 171554473 rs2279514 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.28;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6499;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 171583616 rs200916433 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +5 171785892 rs2569232 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.86;AMR_AF=0.69;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.66;LDAF=0.7322;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 171821671 rs13356223 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0516;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 171849471 rs17074773 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3752;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 172196711 rs2431663 G T 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.57;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.94;LDAF=0.8764;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 172197581 rs34507926 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.31;AVGPOST=0.9931;ERATE=0.0005;EUR_AF=0.05;LDAF=0.1295;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.91,-0.06 +5 172351160 rs2302958 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.16;AMR_AF=0.12;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1782;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 172387094 rs73803681 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0224;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 172396394 rs505788 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 172518112 rs34710345 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0197;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 172550204 rs10476061 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.32;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 172662024 rs2277923 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.72;AMR_AF=0.43;AN=2;ASN_AF=0.67;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.29;LDAF=0.5108;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 173040244 rs150573630 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 173316729 rs359467 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.56;AMR_AF=0.52;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5447;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 173376506 rs12652907 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.30;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.2271;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 174156168 rs4242182 T C 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.37;AMR_AF=0.84;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7869;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 174868840 rs155417 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.99;LDAF=0.9926;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 174870150 rs4532 C T 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.91;AMR_AF=0.71;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7467;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 175394181 rs200408233 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.7634;ERATE=0.0513;EUR_AF=0.38;LDAF=0.4237;RSQ=0.4908;SNPSOURCE=EXOME;THETA=0.0144;VT=SNP GT:DS:GL 0|1:1.150:-0.48,-0.48,-0.48 +5 175772208 rs17622467 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1065;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 175792605 rs2303667 G C 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.61;AMR_AF=0.50;AN=2;ASN_AF=0.60;AVGPOST=0.9652;ERATE=0.0025;EUR_AF=0.60;LDAF=0.5779;RSQ=0.9436;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +5 175793532 rs2303666 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1070;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 175956271 rs890835 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8737;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 175995935 rs10056130 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.70;LDAF=0.5424;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176002144 rs4242200 A C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.76;AMR_AF=0.93;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8688;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176002873 rs3762969 C T 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.49;AMR_AF=0.90;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8044;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.46,-0.02 +5 176002926 rs3762968 C A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.47;AMR_AF=0.90;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8008;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +5 176004476 rs11134982 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9487;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.68,-0.00 +5 176004846 rs1565149 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.65;AMR_AF=0.93;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8326;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 176005477 rs2358747 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.62;AMR_AF=0.78;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6741;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176011264 rs752139 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.57;AMR_AF=0.72;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5804;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176011889 rs4868660 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.41;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2452;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176017455 rs2291442 C T 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.29;AN=2;ASN_AF=0.32;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.25;LDAF=0.2814;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 176017549 rs4868662 C T 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.10;AMR_AF=0.40;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2485;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176024880 rs4868663 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.73;AMR_AF=0.93;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8486;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176025757 rs146535631 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176025938 rs6556276 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176056529 rs4868669 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9740;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 176069831 rs901740 G A 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9614;RSQ=0.9668;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.02 +5 176081856 rs13183320 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.74;AMR_AF=0.79;AN=2;ASN_AF=0.48;AVGPOST=0.9906;ERATE=0.0037;EUR_AF=0.86;LDAF=0.7204;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.06,-0.87 +5 176083175 rs6878977 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0017;EUR_AF=1.00;LDAF=0.9716;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176083997 rs4868677 G A 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.46;AMR_AF=0.80;AN=2;ASN_AF=0.46;AVGPOST=0.9777;ERATE=0.0066;EUR_AF=0.75;LDAF=0.6148;RSQ=0.9677;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +5 176305466 rs2304516 T A 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.29;AMR_AF=0.61;AN=2;ASN_AF=0.59;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.80;LDAF=0.5997;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176306676 rs2292257 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=0.9820;ERATE=0.0023;EUR_AF=0.80;LDAF=0.5654;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.83,-0.00 +5 176313955 rs114127988 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0143;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176314434 rs2278493 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.07;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3052;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 176314459 rs2278492 G A 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.19;AMR_AF=0.46;AN=2;ASN_AF=0.38;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3340;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 176314639 rs6875296 G A 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.07;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3052;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176315299 rs4976662 C T 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.07;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3049;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +5 176318150 rs199663371 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176338294 rs141969154 T G 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0055;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176517461 rs446382 T G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.62;AMR_AF=0.80;AN=2;ASN_AF=0.98;AVGPOST=0.9988;ERATE=0.0013;EUR_AF=0.68;LDAF=0.7654;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176517797 rs376618 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.71;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8140;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176518784 rs452885 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.71;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8140;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176519287 rs393923 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8783;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176520243 rs351855 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.12;AMR_AF=0.34;AN=2;ASN_AF=0.45;AVGPOST=0.9973;ERATE=0.0014;EUR_AF=0.29;LDAF=0.3031;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 176522728 rs42409 C T 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.39;AMR_AF=0.77;AN=2;ASN_AF=0.98;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.65;LDAF=0.6993;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.30,-0.00 +5 176523562 rs31777 C A 100 PASS AA=a;AC=2;AF=0.85;AFR_AF=0.80;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8482;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 176523597 rs31776 A G 100 PASS AA=g;AC=2;AF=0.77;AFR_AF=0.63;AMR_AF=0.80;AN=2;ASN_AF=0.98;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7696;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176636882 rs1363405 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.69;AMR_AF=0.32;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.4141;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 176637149 rs3733874 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2244;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 176637240 rs3733875 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2244;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 176637576 rs28932178 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.20;AN=2;ASN_AF=0.51;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.15;LDAF=0.2422;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 176673773 rs150920473 G T 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0017;RSQ=0.8949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +5 176721198 rs28580074 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.92;AMR_AF=0.80;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7751;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176721272 rs11740250 G C 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.19;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1207;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176733116 rs4631 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7778;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176733616 rs9834 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.95;AMR_AF=0.82;AN=2;ASN_AF=0.47;AVGPOST=0.9954;ERATE=0.0048;EUR_AF=0.89;LDAF=0.7794;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +5 176734855 rs4568379 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.35;AMR_AF=0.21;AN=2;ASN_AF=0.03;AVGPOST=0.9751;ERATE=0.0048;EUR_AF=0.22;LDAF=0.2062;RSQ=0.9429;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-2.24,-0.00,-2.82 +5 176737720 rs13190036 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.99;AMR_AF=0.81;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.89;LDAF=0.7965;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176764108 rs117909302 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.10;AVGPOST=0.9982;ERATE=0.0007;LDAF=0.0387;RSQ=0.9789;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.09 +5 176798040 rs56235845 T G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.55;AMR_AF=0.32;AN=2;ASN_AF=0.23;AVGPOST=0.9483;ERATE=0.0065;EUR_AF=0.32;LDAF=0.3545;RSQ=0.9145;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +5 176798306 rs11746443 G A 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.06;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.28;LDAF=0.1939;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176813404 rs3812036 C T 100 PASS AA=C;AC=2;AF=0.19;AFR_AF=0.05;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1902;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176815124 rs5030873 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.04;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.33;LDAF=0.2339;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176830627 rs17876032 G A 100 PASS AA=-;AC=2;AF=0.40;AFR_AF=0.08;AMR_AF=0.52;AN=2;ASN_AF=0.24;AVGPOST=0.9926;ERATE=0.0008;EUR_AF=0.68;LDAF=0.4048;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 176831119 rs17876031 A G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.36;AMR_AF=0.54;AN=2;ASN_AF=0.24;AVGPOST=0.9894;ERATE=0.0007;EUR_AF=0.68;LDAF=0.4727;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.05,-0.04 +5 176831826 rs17876030 C G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9454;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.13,-0.00 +5 176836532 rs1801020 A G 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.56;AMR_AF=0.70;AN=2;ASN_AF=0.27;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5801;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 176859848 rs2731664 C A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.48;AMR_AF=0.43;AN=2;ASN_AF=0.24;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.51;LDAF=0.4200;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +5 176863519 rs1130857 G C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.35;AMR_AF=0.41;AN=2;ASN_AF=0.24;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.51;LDAF=0.3870;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176867943 rs335435 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3914;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176885178 rs28538572 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9965;RSQ=0.9120;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176885499 rs2544809 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.44;AMR_AF=0.42;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4164;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 176894756 rs2545794 C T 100 PASS AA=a;AC=1;AF=0.39;AFR_AF=0.42;AMR_AF=0.40;AN=2;ASN_AF=0.21;AVGPOST=0.9903;ERATE=0.0126;EUR_AF=0.51;LDAF=0.3934;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +5 176895817 rs446104 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.58;AMR_AF=0.85;AN=2;ASN_AF=0.86;AVGPOST=0.9793;ERATE=0.0663;EUR_AF=0.80;LDAF=0.7771;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176895818 rs371070 C A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.68;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=0.9641;ERATE=0.0133;EUR_AF=0.87;LDAF=0.8505;RSQ=0.9060;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176916516 rs335462 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.40;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=0.9957;ERATE=0.0015;EUR_AF=0.55;LDAF=0.4411;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.03 +5 176931594 rs61749657 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9937;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0360;RSQ=0.9331;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-3.74,-0.00,-5.00 +5 176931706 rs179810 G C 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.33;AMR_AF=0.56;AN=2;ASN_AF=0.33;AVGPOST=0.9933;ERATE=0.0121;EUR_AF=0.49;LDAF=0.4282;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176936650 rs28565502 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9935;ERATE=0.0050;EUR_AF=1.00;LDAF=0.9839;RSQ=0.8447;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +5 176939051 rs28464438 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9921;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176939688 rs28544348 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9790;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176939735 rs335436 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9762;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 176940384 rs335438 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.47;AMR_AF=0.35;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3725;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 176940871 rs335439 G C 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9762;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +5 177031348 rs11537644 T C 100 PASS AA=g;AC=1;AF=0.68;AFR_AF=0.61;AMR_AF=0.69;AN=2;ASN_AF=0.79;AVGPOST=0.9930;ERATE=0.0043;EUR_AF=0.64;LDAF=0.6784;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 177035964 rs729459 T C 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.58;AMR_AF=0.60;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6312;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 177036043 rs6600953 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177158552 rs76216490 G T 100 PASS AA=.;AC=1;AF=0.32;AFR_AF=0.20;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=0.8683;ERATE=0.0264;EUR_AF=0.32;LDAF=0.3158;RSQ=0.8198;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.200:-3.32,-0.30,-0.30 +5 177422876 rs7445271 T C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9985;RSQ=0.9420;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177422908 rs1135320 A G 100 PASS AA=.;AC=2;AF=0.46;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4566;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177547247 rs7719667 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9983;RSQ=0.9292;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177548085 rs7712666 C A 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.41;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3528;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177570759 rs6601218 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177574901 rs7380934 C G 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.64;AMR_AF=0.80;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0056;EUR_AF=0.75;LDAF=0.7052;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177656900 rs75990575 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.13;AN=2;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.20;LDAF=0.0927;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 177674589 rs72819017 C T 100 PASS AA=c;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=0.9843;ERATE=0.0010;EUR_AF=0.19;LDAF=0.1027;RSQ=0.9438;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 177675217 rs2913851 C T 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.10;AMR_AF=0.49;AN=2;ASN_AF=0.21;AVGPOST=0.9823;ERATE=0.0105;EUR_AF=0.48;LDAF=0.3279;RSQ=0.9723;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177683377 rs890802 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.58;AMR_AF=0.59;AN=2;ASN_AF=0.42;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5104;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 177688772 rs2973745 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.21;AMR_AF=0.50;AN=2;ASN_AF=0.15;AVGPOST=0.9840;ERATE=0.0040;EUR_AF=0.44;LDAF=0.3231;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0255;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 177715291 rs890801 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.38;AMR_AF=0.62;AN=2;ASN_AF=0.25;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.70;LDAF=0.5009;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 178373319 rs56954828 G C 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.23;AMR_AF=0.08;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1181;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 178391902 rs12719860 A C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.65;AMR_AF=0.71;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6691;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 178415982 rs4701014 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9885;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 178507069 rs1445846 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7631;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 178507090 rs1445845 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7631;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 178540975 rs1054480 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.05;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2527;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 178549791 rs2303641 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2365;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.25 +5 178557142 rs2251105 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4536;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 178567054 rs2303638 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2235;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 178581797 rs2278222 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2198;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 178581859 rs2278221 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2185;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 178634619 rs423552 C T 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0136;EUR_AF=0.91;LDAF=0.9328;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0109;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 178634672 rs398829 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.40;AMR_AF=0.27;AN=2;ASN_AF=0.64;AVGPOST=0.9871;ERATE=0.0274;EUR_AF=0.27;LDAF=0.3994;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 178770718 rs2271214 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.33;AVGPOST=0.9974;ERATE=0.0014;EUR_AF=0.14;LDAF=0.1898;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 178770759 rs2271213 C G 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.51;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.39;LDAF=0.3890;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 178770981 rs2271212 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.51;AVGPOST=0.9979;ERATE=0.0019;EUR_AF=0.40;LDAF=0.3925;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 178986978 rs7704349 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.38;AMR_AF=0.49;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4582;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 178986987 rs12658664 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.43;AMR_AF=0.48;AN=2;ASN_AF=0.75;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4921;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 178996435 rs11743261 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.40;AMR_AF=0.51;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4895;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179016664 rs6895677 A T 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.09;AMR_AF=0.36;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3190;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179021982 rs28685239 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7103;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +5 179036357 rs7448707 G A 100 PASS AA=N;AC=1;AF=0.34;AFR_AF=0.18;AMR_AF=0.37;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0018;EUR_AF=0.19;LDAF=0.3428;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179036433 rs17355294 G A 100 PASS AA=N;AC=1;AF=0.32;AFR_AF=0.30;AMR_AF=0.34;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3228;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179045142 rs4701143 G A 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.37;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3268;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179153797 rs7734102 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.17;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179193598 rs3797776 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.1978;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179201806 rs199901618 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179201847 rs6895902 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2518;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179260009 rs2241349 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.22;AMR_AF=0.44;AN=2;ASN_AF=0.65;AVGPOST=0.9989;ERATE=0.0037;EUR_AF=0.32;LDAF=0.4018;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 179260153 rs4935 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.77;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=0.9962;ERATE=0.0184;EUR_AF=0.49;LDAF=0.6828;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 179260213 rs4797 G A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.41;AMR_AF=0.64;AN=2;ASN_AF=0.81;AVGPOST=0.9966;ERATE=0.0110;EUR_AF=0.49;LDAF=0.5795;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +5 179264731 rs10277 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6681;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 179264915 rs1065154 G T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.91;AMR_AF=0.67;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6934;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 179267949 rs248248 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.91;AVGPOST=0.9960;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8256;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +5 179269075 rs2303676 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.0041;AMR_AF=0.18;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1236;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179280379 rs1650893 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.91;AMR_AF=0.67;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6982;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 179285752 rs10060182 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.50;AN=2;ASN_AF=0.79;AVGPOST=0.9848;ERATE=0.0004;EUR_AF=0.28;LDAF=0.4272;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.250:-2.34,-0.01,-1.75 +5 179290845 rs30386 T G 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.39;AMR_AF=0.62;AN=2;ASN_AF=0.78;AVGPOST=0.9974;ERATE=0.0101;EUR_AF=0.43;LDAF=0.5436;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179299867 rs532795 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.87;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.39;LDAF=0.6344;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179321657 rs17079780 C T 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.15;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0817;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179407229 rs28011 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.95;AMR_AF=0.70;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7168;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179498595 rs3749821 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.47;AMR_AF=0.63;AN=2;ASN_AF=0.62;AVGPOST=0.9830;ERATE=0.0032;EUR_AF=0.63;LDAF=0.5921;RSQ=0.9720;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.34,-0.01,-2.04 +5 179498658 rs3828698 G T 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.18;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=0.9622;ERATE=0.0018;EUR_AF=0.47;LDAF=0.4484;RSQ=0.9489;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.42 +5 179529124 rs7725201 G A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.82;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7802;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179545562 rs62405054 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.19;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=0.9751;ERATE=0.0214;EUR_AF=0.25;LDAF=0.2556;RSQ=0.9487;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179555407 rs13354066 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.51;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3935;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179555654 rs6895192 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.51;AMR_AF=0.42;AN=2;ASN_AF=0.28;AVGPOST=0.9917;ERATE=0.0043;EUR_AF=0.46;LDAF=0.4172;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.97 +5 179563359 rs55638756 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.09;AMR_AF=0.48;AN=2;ASN_AF=0.44;AVGPOST=0.9950;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3724;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.06,-0.90,-5.00 +5 179563435 rs11546322 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.70;AVGPOST=0.9956;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4635;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-0.10,-0.70,-5.00 +5 179563532 rs2890346 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.12;AVGPOST=0.9941;ERATE=0.0006;EUR_AF=0.36;LDAF=0.2567;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.10,-0.70,-5.00 +5 179565071 rs4700878 G C 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9419;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 179729519 rs1035411 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.70;AMR_AF=0.65;AN=2;ASN_AF=0.93;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7384;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179734200 rs73343449 A G 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.19;AMR_AF=0.15;AN=2;ASN_AF=0.23;AVGPOST=0.9970;ERATE=0.0007;EUR_AF=0.24;LDAF=0.2113;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.06 +5 179743730 rs6893693 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.19;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0781;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 179765467 rs55946431 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.34;AMR_AF=0.53;AN=2;ASN_AF=0.55;AVGPOST=0.9490;ERATE=0.0175;EUR_AF=0.60;LDAF=0.5128;RSQ=0.9250;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 179996111 rs6877400 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.79;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9027;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 179998454 rs13164597 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3839;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 180041208 rs659268 T C 100 PASS AA=t;AC=1;AF=0.67;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.55;AVGPOST=0.9961;ERATE=0.0066;EUR_AF=0.73;LDAF=0.6737;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 180043388 rs1130378 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2340;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 180046209 rs446003 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.58;AMR_AF=0.71;AN=2;ASN_AF=0.51;AVGPOST=0.9021;ERATE=0.0161;EUR_AF=0.70;LDAF=0.6138;RSQ=0.8356;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:0.750:-0.11,-0.66,-4.70 +5 180046344 rs448012 G C 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.46;AMR_AF=0.64;AN=2;ASN_AF=0.44;AVGPOST=0.9556;ERATE=0.0519;EUR_AF=0.58;LDAF=0.5264;RSQ=0.9370;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 180047863 rs423086 C G 100 PASS AA=c;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9677;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +5 180053307 rs402647 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9515;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 180055862 rs383985 T G 100 PASS AA=N;AC=1;AF=0.73;AFR_AF=0.63;AMR_AF=0.71;AN=2;ASN_AF=0.93;AVGPOST=0.9814;ERATE=0.0101;EUR_AF=0.66;LDAF=0.7336;RSQ=0.9641;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +5 180056044 rs13359473 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.07;AVGPOST=0.9963;ERATE=0.0007;EUR_AF=0.34;LDAF=0.2085;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 180166461 rs10464105 C G 100 PASS AA=c;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9269;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0197;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 180218668 rs634501 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.72;AMR_AF=0.54;AN=2;ASN_AF=0.51;AVGPOST=0.9584;ERATE=0.0840;EUR_AF=0.67;LDAF=0.6222;RSQ=0.9363;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +5 180486224 rs7379015 T G 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9879;ERATE=0.0017;EUR_AF=0.88;LDAF=0.8088;RSQ=0.9706;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.67,-0.01 +5 180486247 rs6601166 G T 100 PASS AA=t;AC=2;AF=0.70;AFR_AF=0.50;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9714;ERATE=0.0057;EUR_AF=0.75;LDAF=0.6979;RSQ=0.9471;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +5 180486785 rs10068763 G C 100 PASS AA=t;AC=2;AF=0.69;AFR_AF=0.85;AMR_AF=0.64;AN=2;ASN_AF=0.69;AVGPOST=0.9572;ERATE=0.0225;EUR_AF=0.60;LDAF=0.6787;RSQ=0.9314;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.80,-0.01 +5 180486841 rs10054109 C T 100 PASS AA=c;AC=2;AF=0.45;AFR_AF=0.24;AMR_AF=0.48;AN=2;ASN_AF=0.58;AVGPOST=0.9862;ERATE=0.0043;EUR_AF=0.48;LDAF=0.4559;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.60,-0.00 +5 180582604 rs2546423 A G 100 PASS AA=.;AC=2;AF=0.64;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6371;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +5 180632059 rs3857300 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=0.9938;ERATE=0.0007;EUR_AF=0.01;LDAF=0.0149;RSQ=0.8305;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.750:-2.03,-0.00,-4.10 +4 437831 rs72501950 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.29;AMR_AF=0.10;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1527;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 517600 rs61749092 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0179;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 521068 rs7697650 A T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9742;RSQ=0.9495;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +4 648643 rs10902758 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 780286 rs10794536 C G 100 PASS AA=g;AC=1;AF=0.82;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.71;AVGPOST=0.9948;ERATE=0.0006;EUR_AF=0.84;LDAF=0.8186;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.81,-0.01,-5.00 +4 843695 rs8093 A G 100 PASS AA=a;AC=2;AF=0.75;AFR_AF=0.85;AMR_AF=0.62;AN=2;ASN_AF=0.85;AVGPOST=0.9856;ERATE=0.0033;EUR_AF=0.67;LDAF=0.7471;RSQ=0.9731;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +4 843720 rs2306242 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.11;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0497;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 845772 rs10031922 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9677;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +4 858866 rs1026739 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2450;RSQ=0.9992;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 858941 rs1026738 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9682;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +4 860146 rs2306248 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.54;AMR_AF=0.57;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5991;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 860192 rs1064207 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.54;AMR_AF=0.57;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5991;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 860349 rs2306247 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0529;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 862502 rs2306244 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.15;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1939;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.81 +4 871025 rs3736088 T A 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0535;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 871501 rs35964990 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0228;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 871624 rs1564281 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.29;AVGPOST=0.9981;ERATE=0.0040;EUR_AF=0.40;LDAF=0.3402;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 877271 rs899388 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.03;LDAF=0.0498;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 882625 rs2279182 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1033;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-3.59,-0.00,-5.00 +4 882643 rs2279181 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1032;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 946226 rs11552301 T C 100 PASS AA=c;AC=1;AF=0.62;AFR_AF=0.72;AMR_AF=0.53;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0016;EUR_AF=0.55;LDAF=0.6197;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 946974 rs2290405 G A 100 PASS AA=a;AC=1;AF=0.55;AFR_AF=0.63;AMR_AF=0.52;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5493;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 960713 rs4690196 G A 100 PASS AA=g;AC=1;AF=0.39;AFR_AF=0.21;AMR_AF=0.54;AN=2;ASN_AF=0.36;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3896;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.99,-0.05 +4 961191 rs1377587 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.49;AVGPOST=0.9657;ERATE=0.0045;EUR_AF=0.52;LDAF=0.5755;RSQ=0.9486;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.01,-0.00,-3.70 +4 961373 rs1377586 G A 100 PASS AA=g;AC=1;AF=0.44;AFR_AF=0.43;AMR_AF=0.56;AN=2;ASN_AF=0.36;AVGPOST=0.9952;ERATE=0.0028;EUR_AF=0.45;LDAF=0.4402;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 961397 rs2305487 C T 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0463;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 962100 rs76581432 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=0.9963;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0243;RSQ=0.9365;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-3.34,-0.29,-0.32 +4 980896 rs11248061 C A 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.33;AMR_AF=0.51;AN=2;ASN_AF=0.30;AVGPOST=0.9169;ERATE=0.0072;EUR_AF=0.43;LDAF=0.3902;RSQ=0.8652;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-3.01,-0.47,-0.18 +4 982852 rs3796621 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.37;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9966;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4325;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 983060 rs3796622 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.67;AMR_AF=0.69;AN=2;ASN_AF=0.61;AVGPOST=0.9987;ERATE=0.0006;EUR_AF=0.65;LDAF=0.6516;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 983668 rs59758572 G A 100 PASS AA=g;AC=1;AF=0.02;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0240;RSQ=0.9760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-2.46 +4 983809 rs4690221 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.54;AN=2;ASN_AF=0.37;AVGPOST=0.9923;ERATE=0.0010;EUR_AF=0.42;LDAF=0.4097;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.89,-0.01,-5.00 +4 985372 rs36084010 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.01;AN=2;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0277;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 995305 rs6815946 T C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1874;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 995422 rs6829789 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1874;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 995459 rs6848974 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1875;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 995919 rs6830825 G C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1876;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-5.00 +4 995997 rs6811373 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9970;ERATE=0.0006;EUR_AF=0.17;LDAF=0.1875;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-2.04,-0.00,-3.66 +4 996012 rs6831021 G C 100 PASS AA=g;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1897;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.09,-0.12,-0.64 +4 996165 rs6831280 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1853;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 996248 rs6836258 G C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9947;ERATE=0.0010;EUR_AF=0.16;LDAF=0.1877;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-2.75,-0.45,-0.19 +4 996690 rs73066479 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.12;AN=2;ASN_AF=0.20;AVGPOST=0.9416;ERATE=0.0036;EUR_AF=0.17;LDAF=0.2017;RSQ=0.8664;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.20,-0.00,-2.44 +4 996768 rs115134980 T C 100 PASS AA=c;AC=1;AF=0.19;AFR_AF=0.22;AMR_AF=0.13;AN=2;ASN_AF=0.21;AVGPOST=0.9484;ERATE=0.0035;EUR_AF=0.18;LDAF=0.1996;RSQ=0.8819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.38 +4 996888 rs115929690 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9841;ERATE=0.0014;EUR_AF=0.17;LDAF=0.1904;RSQ=0.9591;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.53,-0.00,-5.00 +4 1006333 rs4647942 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.70;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=0.9215;ERATE=0.0113;EUR_AF=0.48;LDAF=0.5272;RSQ=0.8817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.36,-0.41,-0.78 +4 1018208 rs58679007 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9951;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0132;RSQ=0.8670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 1102195 rs78238785 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0626;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 1164277 rs2279279 C G 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.23;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5806;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 1165130 rs11247975 G T 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.23;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9964;ERATE=0.0007;EUR_AF=0.68;LDAF=0.5805;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.06,-0.00,-5.00 +4 1165741 rs922697 A G 100 PASS AA=G;AC=1;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9510;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 1305799 rs34082974 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.27;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0664;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 1305962 rs6818213 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.27;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0659;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 1309416 rs2272481 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.42;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1865;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 1330759 rs1128427 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.75;AMR_AF=0.66;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6179;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 1332175 rs13147602 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.92;AMR_AF=0.72;AN=2;ASN_AF=0.75;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7204;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 1343405 rs2276903 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.83;AMR_AF=0.67;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6298;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 1346796 rs17164682 A G 100 PASS AA=A;AC=2;AF=0.22;AFR_AF=0.24;AMR_AF=0.25;AN=2;ASN_AF=0.43;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2170;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 1349029 rs2276904 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.28;AMR_AF=0.25;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2255;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.29,-0.02 +4 1374695 rs28614045 C A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.71;AMR_AF=0.75;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7058;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 1374774 rs28522910 C T 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.71;AMR_AF=0.75;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7050;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.59,-0.00 +4 1374789 rs28733902 A G 100 PASS AA=a;AC=2;AF=0.76;AFR_AF=0.93;AMR_AF=0.77;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7577;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.59,-0.00 +4 1377615 rs9996817 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.72;AMR_AF=0.77;AN=2;ASN_AF=0.72;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7259;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 1388583 rs9328733 A G 100 PASS AA=N;AC=2;AF=0.73;AFR_AF=0.89;AMR_AF=0.75;AN=2;ASN_AF=0.69;AVGPOST=0.9764;ERATE=0.0085;EUR_AF=0.65;LDAF=0.7315;RSQ=0.9592;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 1659128 rs56214302 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.94;AMR_AF=0.69;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.62;LDAF=0.6247;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 1801570 rs17886954 C G 100 PASS AA=c;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9992;ERATE=0.0003;LDAF=0.0025;RSQ=0.8538;SNPSOURCE=EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 1807894 rs7688609 G A 100 PASS AA=a;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0023;EUR_AF=1.00;LDAF=0.9576;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 1807922 rs3135898 G A 100 PASS AA=g;AC=1;AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0194;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 1818594 rs9328763 C T 100 PASS AA=t;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 2175733 rs2022302 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.57;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3093;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2176454 rs9328764 G A 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.57;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3099;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2176506 rs6822665 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.85;AMR_AF=0.27;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.16;LDAF=0.3871;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2178108 rs6599411 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.57;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3099;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2181016 rs35787308 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.57;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2181080 rs6830513 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.57;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3099;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2194901 rs10015921 A C 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.61;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3173;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2194946 rs10011549 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.61;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3173;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2194953 rs10002583 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.61;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3173;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2195024 rs10018786 T G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.61;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3173;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2195089 rs10018882 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.61;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.3172;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2233709 rs11937432 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0718;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2252845 rs2233042 C T 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0304;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2252980 rs2071658 T G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.47;AMR_AF=0.26;AN=2;ASN_AF=0.37;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.16;LDAF=0.3002;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-2.20 +4 2275835 rs2051561 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.38;AMR_AF=0.53;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3972;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2306053 rs661301 A G 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.67;AMR_AF=0.78;AN=2;ASN_AF=0.69;AVGPOST=0.9782;ERATE=0.0341;EUR_AF=0.82;LDAF=0.7419;RSQ=0.9578;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 2341194 rs2071680 T C 100 PASS AA=c;AC=1;AF=0.65;AFR_AF=0.71;AMR_AF=0.69;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0023;EUR_AF=0.57;LDAF=0.6494;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2343349 rs615447 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1869;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2698364 rs3733215 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.23;AMR_AF=0.53;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3972;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +4 2743999 rs232712 A G 100 PASS AA=a;AC=2;AF=0.77;AFR_AF=0.78;AMR_AF=0.87;AN=2;ASN_AF=0.59;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7657;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.13,-0.00 +4 2744087 rs2269495 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.09;AMR_AF=0.52;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3638;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +4 2822467 rs231402 G T 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.12;AMR_AF=0.46;AN=2;ASN_AF=0.41;AVGPOST=0.9917;ERATE=0.0072;EUR_AF=0.41;LDAF=0.3542;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2826400 rs3213501 T C 100 PASS AA=c;AC=2;AF=0.74;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.72;LDAF=0.7400;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 2826912 rs16843413 C G 100 PASS AA=c;AC=1;AF=0.12;AFR_AF=0.27;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1194;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2829077 rs2269485 T C 100 PASS AA=c;AC=2;AF=0.72;AFR_AF=0.94;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7226;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 2829409 rs28516876 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.29;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1250;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.36,-0.01,-2.09 +4 2831383 rs231399 T G 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.34;AMR_AF=0.53;AN=2;ASN_AF=0.45;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.48;LDAF=0.4495;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2906453 rs2239728 T G 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2779;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2906707 rs4961 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.05;AMR_AF=0.18;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=0.22;LDAF=0.2481;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2916762 rs4963 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2705;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 2928413 rs4964 T C 100 PASS AA=t;AC=1;AF=0.73;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.53;AVGPOST=0.9982;ERATE=0.0014;EUR_AF=0.78;LDAF=0.7347;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2934308 rs1263349 G A 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.77;AMR_AF=0.80;AN=2;ASN_AF=0.48;AVGPOST=0.9987;ERATE=0.0021;EUR_AF=0.79;LDAF=0.7084;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2935251 rs2301374 T A 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.77;AMR_AF=0.80;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7168;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2943361 rs1054090 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.67;AMR_AF=0.42;AN=2;ASN_AF=0.18;AVGPOST=0.9993;ERATE=0.0014;EUR_AF=0.44;LDAF=0.4239;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2951804 rs2515960 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.67;AMR_AF=0.42;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4243;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2955192 rs1475976 C G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.67;AMR_AF=0.42;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4217;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2958362 rs147257376 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2990499 rs2960306 G T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.54;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3373;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 2993980 rs2515941 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3158;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3006043 rs1024323 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.63;AMR_AF=0.38;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3944;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3009536 rs117478149 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0087;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3039150 rs1801058 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.92;AMR_AF=0.64;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6380;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3116998 rs10488839 A G 100 PASS AA=A;AC=1;AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.08;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0299;RSQ=0.9562;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3162056 rs363099 C T 100 PASS AA=C;AC=2;AF=0.25;AFR_AF=0.01;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2556;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.09,-0.00 +4 3180021 rs363096 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.67;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5440;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3213832 rs362336 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.31;AN=2;ASN_AF=0.36;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2779;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3215835 rs362331 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.57;AMR_AF=0.44;AN=2;ASN_AF=0.38;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4556;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3216815 rs916171 C G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.56;AMR_AF=0.42;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4460;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3219613 rs2857790 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3227419 rs362273 A G 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2825;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3234980 rs362272 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.01;AMR_AF=0.30;AN=2;ASN_AF=0.31;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2469;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3240159 rs2071704 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.51;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9980;ERATE=0.0010;EUR_AF=0.44;LDAF=0.4207;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.77,-0.00 +4 3240526 rs2858081 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9875;RSQ=0.9214;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +4 3255258 rs2798227 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.41;AVGPOST=0.9968;ERATE=0.0123;EUR_AF=0.49;LDAF=0.3488;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3257593 rs362287 C T 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=0.9944;ERATE=0.0007;EUR_AF=0.40;LDAF=0.2968;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-3.14,-0.48,-0.18 +4 3417845 rs3213507 G C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.48;AVGPOST=0.9993;ERATE=0.0020;EUR_AF=0.27;LDAF=0.3765;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3427315 rs183853932 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0138;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3429856 rs2269497 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0540;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3444593 rs2073504 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.19;AMR_AF=0.24;AN=2;ASN_AF=0.34;AVGPOST=0.9983;ERATE=0.0047;EUR_AF=0.19;LDAF=0.2375;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3445745 rs4690097 C T 100 PASS AA=t;AC=2;AF=0.77;AFR_AF=0.66;AMR_AF=0.72;AN=2;ASN_AF=0.94;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7707;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3446132 rs1987546 C G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.66;AMR_AF=0.73;AN=2;ASN_AF=0.94;AVGPOST=0.9961;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7702;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.38,-0.02 +4 3446751 rs3752439 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.83;AVGPOST=0.9910;ERATE=0.0006;EUR_AF=0.45;LDAF=0.5335;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.05 +4 3449886 rs28468427 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.28;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9927;ERATE=0.0008;EUR_AF=0.24;LDAF=0.2882;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.71 +4 3475107 rs2344208 G C 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.59;AMR_AF=0.27;AN=2;ASN_AF=0.29;AVGPOST=0.9670;ERATE=0.0005;EUR_AF=0.17;LDAF=0.3157;RSQ=0.9521;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3475252 rs4325970 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3475406 rs57204641 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0654;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-1.94,-0.01,-5.00 +4 3487237 rs2006791 A G 100 PASS AA=g;AC=2;AF=0.78;AFR_AF=0.70;AMR_AF=0.80;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0012;EUR_AF=0.71;LDAF=0.7773;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3491504 rs59932476 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0468;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.02 +4 3494600 rs6811423 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.54;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2557;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3494826 rs6811856 A C 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.54;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2573;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3494847 rs6831659 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.54;AVGPOST=0.9935;ERATE=0.0015;EUR_AF=0.23;LDAF=0.2539;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3494898 rs6850908 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.53;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2559;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3494956 rs16844464 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.12;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=0.9968;ERATE=0.0007;EUR_AF=0.03;LDAF=0.0604;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3514689 rs1800495 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0452;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3514695 rs6789 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3482;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3516448 rs2285088 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.18;AMR_AF=0.19;AN=2;ASN_AF=0.55;AVGPOST=0.9979;ERATE=0.0026;EUR_AF=0.23;LDAF=0.2979;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3516689 rs2515967 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9915;RSQ=0.9632;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 3521939 rs1741547 T A 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.42;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3729;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3526645 rs11549516 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0394;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 3526786 rs1800485 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2518;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 3768741 rs138457504 C G 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.0040;LDAF=0.0254;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 4199634 rs2916414 A T 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.57;AMR_AF=0.56;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0014;EUR_AF=0.67;LDAF=0.6205;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 4204299 rs2920182 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.94;AMR_AF=0.74;AN=2;ASN_AF=0.67;AVGPOST=0.9963;ERATE=0.0013;EUR_AF=0.72;LDAF=0.7592;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 4239539 rs62286914 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.39;AMR_AF=0.45;AN=2;ASN_AF=0.33;AVGPOST=0.9441;ERATE=0.1255;EUR_AF=0.33;LDAF=0.3731;RSQ=0.7976;SNPSOURCE=EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 4249297 rs2916469 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4202;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 4249300 rs2916468 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4207;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 4275280 rs2272741 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.69;AMR_AF=0.23;AN=2;ASN_AF=0.49;AVGPOST=0.9978;ERATE=0.0032;EUR_AF=0.18;LDAF=0.3847;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 4275287 rs2272740 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.68;AMR_AF=0.22;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3810;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 4276132 rs7376390 T C 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 4276475 rs2272739 C A 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.01;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0467;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 4304337 rs2916382 C T 100 PASS AA=T;AC=1;AF=0.82;AFR_AF=0.80;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 5016841 rs6847131 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +4 5018702 rs11724788 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.26;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7137;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5170214 rs3749567 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.21;LDAF=0.2415;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 5418539 rs168985 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.92;AMR_AF=0.67;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8314;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +4 5461801 rs2301856 A G 100 PASS AA=a;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1842;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 5469810 rs2301855 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3122;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 5527249 rs2267654 A G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.30;AMR_AF=0.28;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3423;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5570221 rs12511039 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.31;LDAF=0.4325;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.04,-0.00 +4 5617295 rs10025164 T C 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.56;AMR_AF=0.36;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4278;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5624670 rs730469 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.86;AMR_AF=0.39;AN=2;ASN_AF=0.58;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.27;LDAF=0.5014;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5710189 rs6820907 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.35;AMR_AF=0.13;AN=2;ASN_AF=0.22;AVGPOST=0.9612;ERATE=0.0027;EUR_AF=0.13;LDAF=0.2071;RSQ=0.9136;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.69,-0.10 +4 5743509 rs6446393 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.95;LDAF=0.9777;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0153;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5743512 rs6414624 T C 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.53;AMR_AF=0.81;AN=2;ASN_AF=0.91;AVGPOST=0.9965;ERATE=0.0251;EUR_AF=0.80;LDAF=0.7724;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0596;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5747072 rs2286343 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.30;AMR_AF=0.43;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4319;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5749904 rs4688963 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.55;AMR_AF=0.30;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 5749961 rs4688962 G C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.80;AMR_AF=0.39;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5590;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 5754544 rs899691 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.44;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.47;LDAF=0.3495;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 5755516 rs60582583 T A 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.0040;LDAF=0.0202;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 5755542 rs2302075 C A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.99;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8332;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 5785442 rs1383180 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.19;AMR_AF=0.46;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3360;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5830414 rs6818391 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0007;EUR_AF=0.94;LDAF=0.9693;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 5838513 rs12331 C G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.89;AMR_AF=0.41;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5718;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 5841350 rs16837723 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.42;AMR_AF=0.14;AN=2;ASN_AF=0.49;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.12;LDAF=0.2871;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 5843196 rs2286283 T G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.57;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4032;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 6114420 rs1543965 G T 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.09;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9926;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3637;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6114421 rs1609743 C A 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.09;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9940;ERATE=0.0010;EUR_AF=0.35;LDAF=0.3586;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6114422 rs1543966 C A 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.09;AMR_AF=0.53;AN=2;ASN_AF=0.50;AVGPOST=0.9940;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3667;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6292909 rs9998519 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.66;AMR_AF=0.69;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.62;LDAF=0.7202;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6292915 rs10010131 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.70;AMR_AF=0.69;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7331;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6293696 rs1801213 C G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.70;AMR_AF=0.73;AN=2;ASN_AF=0.94;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.68;LDAF=0.7615;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.14,-0.00 +4 6302519 rs1801212 G A 100 PASS AA=a;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.72;LDAF=0.8641;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6302707 rs1801206 C T 100 PASS AA=c;AC=2;AF=0.67;AFR_AF=0.43;AMR_AF=0.66;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6657;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6303022 rs1801214 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.69;AMR_AF=0.69;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7327;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6303322 rs71524362 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0073;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 6303354 rs734312 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.06;AMR_AF=0.56;AN=2;ASN_AF=0.84;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5208;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6303955 rs1046314 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.47;AMR_AF=0.67;AN=2;ASN_AF=0.94;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.61;LDAF=0.6758;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6304087 rs1046316 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.78;AMR_AF=0.74;AN=2;ASN_AF=0.94;AVGPOST=0.9980;ERATE=0.0014;EUR_AF=0.68;LDAF=0.7791;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6304242 rs1046317 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.80;AMR_AF=0.75;AN=2;ASN_AF=0.94;AVGPOST=0.9975;ERATE=0.0013;EUR_AF=0.68;LDAF=0.7866;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6325018 rs3796402 A T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.49;AMR_AF=0.67;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6618;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6325086 rs3796403 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.45;AMR_AF=0.66;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0020;EUR_AF=0.56;LDAF=0.6494;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6330947 rs6811801 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.42;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9967;ERATE=0.0012;LDAF=0.1128;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.42 +4 6374468 rs12511721 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.35;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=0.9986;ERATE=0.0009;EUR_AF=0.22;LDAF=0.3217;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 6377530 rs4688997 C G 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.47;AMR_AF=0.75;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7477;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6377534 rs4688998 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.74;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9127;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6578487 rs4689485 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.77;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8370;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6596360 rs2301795 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.47;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4673;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6611813 rs4689487 T C 100 PASS AA=t;AC=2;AF=0.23;AFR_AF=0.34;AMR_AF=0.29;AN=2;ASN_AF=0.15;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=0.18;LDAF=0.2258;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6616056 rs61729241 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=0.9989;ERATE=0.0032;EUR_AF=0.05;LDAF=0.0479;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 6619165 rs4689489 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9894;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6619204 rs4689490 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.31;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7414;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6623032 rs4234768 G T 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0019;EUR_AF=1.00;LDAF=0.9612;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6698667 rs11734898 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6698706 rs11733989 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 6864690 rs144840805 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0089;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 6925237 rs34860182 C G 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0654;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 6969163 rs62289166 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0740;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 7006541 rs2301819 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.21;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.12;LDAF=0.1209;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 7044357 rs871133 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.97;LDAF=0.9627;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.84,-0.07 +4 7044380 rs871134 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.35;AMR_AF=0.53;AN=2;ASN_AF=0.61;AVGPOST=0.9856;ERATE=0.0009;EUR_AF=0.58;LDAF=0.5279;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.47 +4 7064219 rs28636568 A T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.47;AMR_AF=0.70;AN=2;ASN_AF=0.69;AVGPOST=0.9885;ERATE=0.0098;EUR_AF=0.75;LDAF=0.6601;RSQ=0.9807;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.59 +4 7069804 rs3822270 C A 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.48;AMR_AF=0.70;AN=2;ASN_AF=0.71;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.77;LDAF=0.6769;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 7435379 rs4689746 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9862;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 7655855 rs2285789 C T 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.11;AMR_AF=0.62;AN=2;ASN_AF=0.90;AVGPOST=0.9915;ERATE=0.0006;EUR_AF=0.68;LDAF=0.5988;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 7684641 rs4689820 C A 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.62;AMR_AF=0.62;AN=2;ASN_AF=0.69;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6395;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 7684661 rs4689821 C A 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.54;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.9796;ERATE=0.0078;EUR_AF=0.49;LDAF=0.5447;RSQ=0.9712;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 7684662 rs4689822 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.56;AN=2;ASN_AF=0.60;AVGPOST=0.9731;ERATE=0.0148;EUR_AF=0.49;LDAF=0.5363;RSQ=0.9661;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 7691193 rs929264 G C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7465;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +4 7714490 rs4689833 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.78;AMR_AF=0.78;AN=2;ASN_AF=1.00;AVGPOST=0.9975;ERATE=0.0014;EUR_AF=0.73;LDAF=0.8184;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 7716061 rs16840892 C T 100 PASS AA=C;AC=1;AF=0.12;AMR_AF=0.16;AN=2;ASN_AF=0.33;AVGPOST=0.9884;ERATE=0.0005;EUR_AF=0.02;LDAF=0.1203;RSQ=0.9657;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.30 +4 7716932 rs6816604 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.82;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9408;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 7728472 rs2301746 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.59;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.52;LDAF=0.5204;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 7728658 rs2301745 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.78;AMR_AF=0.52;AN=2;ASN_AF=0.61;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.57;LDAF=0.6176;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 7731310 rs1544402 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.13;AMR_AF=0.46;AN=2;ASN_AF=0.36;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.38;LDAF=0.3347;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 7765495 rs2240053 G T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.26;AMR_AF=0.14;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2176;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.65,-4.70 +4 7765566 rs730420 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1229;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.89,-0.06 +4 7770645 rs199953617 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +4 7770723 rs2285761 G T 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.67;AVGPOST=0.9966;ERATE=0.0041;EUR_AF=0.18;LDAF=0.3475;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 7774610 rs2276967 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.09;LDAF=0.1715;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 7787899 rs16841246 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.13;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1960;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 7845067 rs62289296 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1275;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 7845123 rs62289297 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.23;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.09;LDAF=0.1286;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 8009737 rs16841552 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.32;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1665;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 8009759 rs17180256 G A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.86;AMR_AF=0.71;AN=2;ASN_AF=0.77;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7637;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8031471 rs80092385 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9934;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7463;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +4 8062689 rs6811028 T C 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=0.9701;ERATE=0.0334;EUR_AF=0.76;LDAF=0.8153;RSQ=0.9391;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 8062690 rs10938683 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.84;AVGPOST=0.9636;ERATE=0.0438;EUR_AF=0.53;LDAF=0.5984;RSQ=0.9503;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 8062830 rs16841624 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.06;AMR_AF=0.21;AN=2;ASN_AF=0.31;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1864;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 8221058 rs4696782 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.66;AMR_AF=0.70;AN=2;ASN_AF=0.82;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.65;LDAF=0.7022;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8228731 rs1281145 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0023;EUR_AF=1.00;LDAF=0.9730;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8228894 rs1292647 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9693;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.92,-0.00 +4 8229218 rs1281146 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9854;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8229326 rs1281147 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9713;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8229551 rs201128171 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 8242466 rs1281103 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0020;EUR_AF=0.99;LDAF=0.9850;RSQ=0.9419;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8306028 rs4696801 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.29;LDAF=0.3707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8594574 rs2302583 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.91;AVGPOST=0.9841;ERATE=0.0019;EUR_AF=0.74;LDAF=0.8093;RSQ=0.9617;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +4 8594577 rs34964084 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9852;ERATE=0.0009;EUR_AF=0.24;LDAF=0.1616;RSQ=0.9566;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.62,-0.12 +4 8602816 rs4594711 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9795;RSQ=0.9557;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +4 8602884 rs4301095 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9814;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8602935 rs4431213 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9721;ERATE=0.0130;EUR_AF=0.99;LDAF=0.9575;RSQ=0.7583;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8605933 rs41266531 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.44;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9962;ERATE=0.0008;EUR_AF=0.10;LDAF=0.1879;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.17,-0.48,-0.18 +4 8608634 rs2302580 C T 100 PASS AA=c;AC=1;AF=0.40;AFR_AF=0.12;AMR_AF=0.54;AN=2;ASN_AF=0.46;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.46;LDAF=0.3969;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.60,-0.13 +4 8608979 rs2302578 G A 100 PASS AA=g;AC=2;AF=0.47;AFR_AF=0.23;AMR_AF=0.60;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.54;LDAF=0.4731;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8616054 rs2302572 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.21;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4651;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 8616070 rs2302571 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.21;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4666;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 8616096 rs1131140 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.40;AMR_AF=0.64;AN=2;ASN_AF=0.90;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6236;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8616179 rs7378066 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8621194 rs28514374 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0014;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 8621386 rs1050464 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.20;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9924;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4312;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.12,-0.61 +4 9784631 rs6283 C T 100 PASS AA=c;AC=1;AF=0.59;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.59;AVGPOST=0.9796;ERATE=0.0369;EUR_AF=0.59;LDAF=0.5878;RSQ=0.9664;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.350:-5.00,-0.22,-0.40 +4 9785134 rs1967551 T C 100 PASS AA=t;AC=2;AF=0.46;AFR_AF=0.32;AMR_AF=0.54;AN=2;ASN_AF=0.35;AVGPOST=0.9972;ERATE=0.0016;EUR_AF=0.60;LDAF=0.4613;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +4 9909850 rs2280204 T G 100 PASS AA=T;AC=2;AF=0.21;AFR_AF=0.36;AMR_AF=0.18;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.2098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 9922167 rs16890979 C T 100 PASS AA=C;AC=2;AF=0.22;AFR_AF=0.43;AMR_AF=0.33;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2226;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 9998440 rs10939650 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.70;AMR_AF=0.62;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.76;LDAF=0.6591;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 9998493 rs13113918 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.78;AMR_AF=0.73;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.8391;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 9998605 rs28592748 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.78;AMR_AF=0.73;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.8391;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 10020564 rs2240721 G A 100 PASS AA=g;AC=2;AF=0.42;AFR_AF=0.17;AMR_AF=0.47;AN=2;ASN_AF=0.44;AVGPOST=0.9971;ERATE=0.0009;EUR_AF=0.55;LDAF=0.4200;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +4 10022981 rs2276961 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.17;AMR_AF=0.47;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.4196;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 10446385 rs9291410 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 10446906 rs10016022 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.88;AMR_AF=0.77;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.76;LDAF=0.7952;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 10447168 rs66538112 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.1983;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 10502937 rs2903960 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9895;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 10509699 rs2868941 T C 100 PASS AA=t;AC=1;AF=0.78;AFR_AF=0.84;AMR_AF=0.74;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7764;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +4 10669522 rs13136927 A C 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.31;AMR_AF=0.48;AN=2;ASN_AF=0.38;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4334;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 13545792 rs9684692 G T 100 PASS AA=g;AC=2;AF=0.68;AFR_AF=0.40;AMR_AF=0.65;AN=2;ASN_AF=0.97;AVGPOST=0.9831;ERATE=0.0004;EUR_AF=0.67;LDAF=0.6821;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 13606576 rs1971278 A T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.34;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.81;LDAF=0.7518;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 13615293 rs2109917 C A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.34;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7509;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15482477 rs10000250 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8921;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15538744 rs1558572 T G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.79;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7742;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15539498 rs1861044 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.52;AMR_AF=0.58;AN=2;ASN_AF=0.33;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.55;LDAF=0.4927;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 15539779 rs17476642 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1015;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 15552423 rs2041673 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1120;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 15560750 rs35309200 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1098;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +4 15568992 rs13121363 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.62;AMR_AF=0.75;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6606;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15569146 rs13116304 A C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.62;AMR_AF=0.75;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6604;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15587897 rs6832789 A T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15603069 rs1134634 G C 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.57;AMR_AF=0.51;AN=2;ASN_AF=0.51;AVGPOST=0.9986;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5569;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.23 +4 15640168 rs3182730 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.0969;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 15709192 rs2302465 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0751;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 15937526 rs1042510 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2332;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 15937731 rs2072313 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.89;AMR_AF=0.96;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.97;LDAF=0.9127;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15964040 rs2286460 G A 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.45;AMR_AF=0.65;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4991;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 15964501 rs2286459 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.32;AMR_AF=0.63;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.50;LDAF=0.4524;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15964573 rs758328 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.77;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9403;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 15964670 rs35496730 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1166;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 15964763 rs4698432 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2998;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 15987348 rs16892734 C T 100 PASS AA=C;AC=1;AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0575;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 15992802 rs4698131 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0960;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 15992831 rs4698436 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0947;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 15994019 rs55708318 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0192;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 16189991 rs75841626 A T 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.27;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1832;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 16215537 rs12651110 T G 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.22;LDAF=0.1857;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 16510131 rs9993371 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3948;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 16513748 rs6824949 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1650;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 16597280 rs1506462 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 17503433 rs3733570 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.10;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 17517099 rs1551091 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9885;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 17586703 rs3733576 T C 100 PASS AA=t;AC=1;AF=0.78;AFR_AF=0.82;AMR_AF=0.73;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7811;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 17625209 rs11733730 G C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.48;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.63;LDAF=0.6659;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 17818885 rs2302212 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.46;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.3615;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 17829990 rs3795243 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1042;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 17841848 rs2286535 A C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.37;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1819;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 17844029 rs17585261 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.82;AMR_AF=0.53;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.6206;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 20520993 rs519813 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8994;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 20552510 rs17542486 A C 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.17;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0736;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 20569099 rs2290750 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.52;AMR_AF=0.33;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3210;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 20569254 rs12506323 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.27;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2024;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 20569259 rs2290751 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.35;AMR_AF=0.31;AN=2;ASN_AF=0.13;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2787;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 20611818 rs35891001 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.21;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1812;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 20711423 rs193108636 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 20852166 rs3765121 A G 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.14;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.3592;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 20852244 rs3765122 A G 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.14;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.3593;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 21950259 rs6448102 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 22439914 rs6823735 A C 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.23;AMR_AF=0.67;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.5950;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 23797521 rs201337076 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 23815522 rs3755863 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3712;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 23815924 rs2970847 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.82;LDAF=0.8560;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 24550580 rs33972724 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 24801315 rs2536512 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9649;ERATE=0.0006;EUR_AF=0.63;LDAF=0.4118;RSQ=0.9531;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.10 +4 25005023 rs2232029 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.23;AMR_AF=0.29;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.16;LDAF=0.2578;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.97 +4 25005193 rs2232028 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.92;AMR_AF=0.60;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.7262;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 25253995 rs313567 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.81;AMR_AF=0.82;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.83;LDAF=0.7865;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 25363901 rs315675 T A 100 PASS AA=A;AC=1;AF=0.88;AFR_AF=0.99;AMR_AF=0.88;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8814;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 25394078 rs2292408 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.22;AMR_AF=0.47;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3656;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 25404553 rs10023139 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.51;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5142;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 25408516 rs3214034 T A 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.47;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3464;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 25419283 rs9174 T C 100 PASS AA=t;AC=1;AF=0.51;AFR_AF=0.59;AMR_AF=0.55;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5109;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 25664244 rs4697597 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1145;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 25669530 rs77319279 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0137;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 25673284 rs79450009 C T 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0303;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 25674908 rs62409432 C G 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9890;ERATE=0.0012;EUR_AF=0.90;LDAF=0.9365;RSQ=0.9350;SNPSOURCE=EXOME;THETA=0.0302;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.14,-0.00 +4 25678199 rs6448389 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9223;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 25678396 rs3733545 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.33;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=0.9971;ERATE=0.0007;EUR_AF=0.20;LDAF=0.3397;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 25769135 rs2290577 T C 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.57;AMR_AF=0.53;AN=2;ASN_AF=0.58;AVGPOST=0.9967;ERATE=0.0007;EUR_AF=0.49;LDAF=0.5403;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +4 26364300 rs13116873 C G 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.21;AMR_AF=0.61;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 26417136 rs2270226 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.30;AMR_AF=0.65;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.56;LDAF=0.5128;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 26585881 rs4692549 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.40;LDAF=0.3143;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 26615982 rs260954 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.53;AMR_AF=0.98;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8665;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 26673761 rs9997999 T A 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.52;AMR_AF=0.98;AN=2;ASN_AF=0.92;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=1.00;LDAF=0.8635;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.14,-0.00 +4 26673787 rs7691219 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9811;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +4 30723052 rs181051038 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9965;ERATE=0.0005;LDAF=0.0084;RSQ=0.8456;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +4 30725696 rs1047012 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1504;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 30725987 rs977931 G A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1906;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 36081878 rs4833069 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9928;RSQ=0.9743;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 36149025 rs1567483 G A 100 PASS AA=A;AC=1;AF=0.94;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=0.91;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9398;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0092;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 36160340 rs1546495 G T 100 PASS AA=T;AC=1;AF=0.86;AFR_AF=0.87;AMR_AF=0.86;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8630;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 36163128 rs16991960 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0726;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 36216114 rs78599785 A T 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0718;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 37590570 rs2279994 G A 100 PASS AA=g;AC=2;AF=0.18;AFR_AF=0.14;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1782;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 37592128 rs2973275 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.11;AVGPOST=0.9904;ERATE=0.0104;EUR_AF=0.26;LDAF=0.1707;RSQ=0.9766;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 37636750 rs2276943 T G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.55;AMR_AF=0.63;AN=2;ASN_AF=0.45;AVGPOST=0.9949;ERATE=0.0058;EUR_AF=0.62;LDAF=0.5632;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 37651155 rs2292298 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.24;AMR_AF=0.30;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3144;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 37903669 rs2279028 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.64;AMR_AF=0.34;AN=2;ASN_AF=0.35;AVGPOST=0.9980;ERATE=0.0005;EUR_AF=0.21;LDAF=0.3659;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 37903756 rs2279027 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.89;AMR_AF=0.59;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6832;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 37904082 rs2279026 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.67;AMR_AF=0.34;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3724;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38016395 rs10501 T G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.62;AMR_AF=0.48;AN=2;ASN_AF=0.74;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.42;LDAF=0.5608;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38119753 rs200460442 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0006;RSQ=0.8338;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38138856 rs13110318 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1047;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38774785 rs10776482 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.22;LDAF=0.3090;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38775040 rs10776483 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.3090;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38776107 rs11096955 T G 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.55;AMR_AF=0.41;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4839;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 38776180 rs11096956 C A 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.22;LDAF=0.3090;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38776235 rs11466653 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0740;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38776303 rs11466652 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.37;AMR_AF=0.09;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1746;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 38776320 rs11466651 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0759;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38776491 rs11096957 T G 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.55;AMR_AF=0.41;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.4835;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 38776725 rs11466649 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0759;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38777059 rs10856837 C T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1065;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38777173 rs10856838 A T 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.49;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.2706;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 38777236 rs10856839 T G 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.49;AMR_AF=0.27;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.2706;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 38798648 rs5743618 C A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.95;AMR_AF=0.65;AN=2;ASN_AF=0.99;AVGPOST=0.9859;ERATE=0.0136;EUR_AF=0.25;LDAF=0.6644;RSQ=0.9850;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 38798935 rs5743614 C T 100 PASS AA=c;AC=1;AF=0.52;AFR_AF=0.86;AMR_AF=0.43;AN=2;ASN_AF=0.66;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.24;LDAF=0.5196;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.00 +4 38799710 rs4833095 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.89;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.24;LDAF=0.5290;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 38830350 rs5743810 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.98;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.57;LDAF=0.8117;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 38930893 rs2306923 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0179;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38933859 rs17429619 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1280;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38937372 rs2271031 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.89;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6865;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 38945169 rs1060582 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1038;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38972770 rs147646218 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 38995310 rs11721954 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.24;AMR_AF=0.35;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4163;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 38995374 rs10212770 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9111;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 39064126 rs2711942 G C 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.63;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7555;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39064162 rs2711941 A C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.63;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7560;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39109399 rs12508577 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.40;AMR_AF=0.64;AN=2;ASN_AF=0.52;AVGPOST=0.9987;ERATE=0.0022;EUR_AF=0.62;LDAF=0.5468;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39116775 rs10026775 A T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.41;AMR_AF=0.63;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5374;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39116911 rs3733276 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.41;AMR_AF=0.63;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5374;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39122697 rs3733275 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.41;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5375;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39205365 rs1451817 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9689;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 39207318 rs17584431 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.0041;AMR_AF=0.14;AN=2;ASN_AF=0.15;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1141;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 39216221 rs2167494 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2546;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 39226486 rs199520609 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.30;AN=2;ASN_AF=0.25;AVGPOST=0.9068;ERATE=0.1196;EUR_AF=0.20;LDAF=0.2513;RSQ=0.7604;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-3.74,-0.00,-5.00 +4 39302029 rs2066786 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.07;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=0.9988;ERATE=0.0017;EUR_AF=0.56;LDAF=0.4857;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 39308187 rs2066789 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.40;AMR_AF=0.72;AN=2;ASN_AF=0.91;AVGPOST=0.9949;ERATE=0.0486;EUR_AF=0.62;LDAF=0.6642;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 39343940 rs2306596 C A 100 PASS AA=c;AC=2;AF=0.46;AFR_AF=0.07;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4607;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 39353122 rs4975007 C T 100 PASS AA=t;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9773;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +4 39466779 rs35086467 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39506144 rs1379819 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.36;AMR_AF=0.08;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1696;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 39510175 rs6815780 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.51;AMR_AF=0.15;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2733;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 39510264 rs1129052 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.51;AMR_AF=0.15;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2733;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 39511359 rs6531722 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.51;AMR_AF=0.15;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2733;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 39512347 rs11544855 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.0777;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39515655 rs10021786 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.47;AMR_AF=0.15;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2630;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 39515736 rs10019532 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.47;AMR_AF=0.15;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2628;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 39864448 rs4547806 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.25;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2306;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 39921942 rs28449663 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.16;AMR_AF=0.30;AN=2;ASN_AF=0.65;AVGPOST=0.9936;ERATE=0.0031;EUR_AF=0.41;LDAF=0.3975;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 40103767 rs17511668 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1311;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 40119501 rs1128372 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1312;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 40121562 rs794001 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.70;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8117;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 40122453 rs78417585 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0051;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 40337523 rs56241474 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.32;AMR_AF=0.28;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2239;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 40337908 rs10022491 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.92;AMR_AF=0.66;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6038;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 40337944 rs56159866 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1266;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 40356422 rs10009228 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.66;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7587;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 40428010 rs278981 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.61;AMR_AF=0.73;AN=2;ASN_AF=0.53;AVGPOST=0.9829;ERATE=0.0560;EUR_AF=0.72;LDAF=0.6455;RSQ=0.9679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 40438576 rs2307046 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.84;AN=2;ASN_AF=0.80;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8208;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 40440215 rs2291580 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7344;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 40440854 rs1052153 G C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.72;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9952;ERATE=0.0014;EUR_AF=0.88;LDAF=0.8175;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.80,-0.08 +4 40778146 rs2465570 C T 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.89;AMR_AF=0.88;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.78;LDAF=0.7532;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 40778162 rs2437323 T G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.89;AMR_AF=0.88;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.78;LDAF=0.7532;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 41015823 rs2292234 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=0.9727;ERATE=0.0078;EUR_AF=0.38;LDAF=0.3672;RSQ=0.9684;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 41015899 rs4861358 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.32;AMR_AF=0.72;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6933;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 41016441 rs200746372 A C 100 PASS AA=A;AC=2;AF=0.22;AFR_AF=0.16;AMR_AF=0.27;AN=2;ASN_AF=0.25;AVGPOST=0.9492;ERATE=0.1101;EUR_AF=0.21;LDAF=0.2292;RSQ=0.8618;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.550:-5.00,-0.81,-0.07 +4 41258970 rs11556271 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1239;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 41258978 rs9321 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1226;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 41526503 rs4266323 C T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.94;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4895;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 41615690 rs13146318 T A 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.08;AMR_AF=0.74;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5891;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 41646651 rs2304647 G C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.77;AMR_AF=0.40;AN=2;ASN_AF=0.16;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4264;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 41937458 rs41265681 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0165;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 41940576 rs16853777 G A 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.33;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0027;EUR_AF=0.12;LDAF=0.1385;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 41983787 rs2174728 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.13;LDAF=0.0616;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 41984118 rs2660320 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.15;AMR_AF=0.78;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6915;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 41992677 rs2581434 C G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.25;AMR_AF=0.83;AN=2;ASN_AF=0.96;AVGPOST=0.9932;ERATE=0.0010;EUR_AF=0.83;LDAF=0.7303;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +4 42003671 rs1047626 A G 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.12;AMR_AF=0.75;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6682;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 42003835 rs2581453 C G 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.17;AMR_AF=0.78;AN=2;ASN_AF=0.96;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6955;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 42020142 rs2581423 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9794;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 42022464 rs15857 C A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.22;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 42024982 rs13107768 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.22;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 42402992 rs66671329 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.06;AMR_AF=0.26;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3547;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 42618138 rs10033628 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1651;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 42965159 rs10213360 A C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8734;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 44682465 rs6447368 T C 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9921;ERATE=0.0077;EUR_AF=0.59;LDAF=0.4592;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 44684455 rs13117025 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9706;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 44685225 rs58659516 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0009;EUR_AF=1.00;LDAF=0.9859;RSQ=0.9479;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.43,-0.00 +4 44696538 rs12641137 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 44699484 rs6851576 T G 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.29;AMR_AF=0.53;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4731;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 44699506 rs6821295 C T 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.29;AMR_AF=0.53;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4731;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 46060412 rs77939156 G T 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0407;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 46995366 rs2229940 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9989;ERATE=0.0023;EUR_AF=0.37;LDAF=0.3405;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 47322190 rs4482737 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9792;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 47582387 rs2351791 A C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.78;LDAF=0.7496;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 47584046 rs1058793 G A 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.30;AMR_AF=0.23;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.15;LDAF=0.3026;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 47589203 rs1316874 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1988;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 47605505 rs61759670 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0096;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 47667064 rs11934749 T C 100 PASS AA=C;AC=1;AF=0.93;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9279;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 47679928 rs2271036 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.48;AMR_AF=0.27;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0025;EUR_AF=0.26;LDAF=0.3962;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 47680085 rs2271037 T G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.67;AMR_AF=0.29;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.26;LDAF=0.4456;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 47839929 rs2289433 C T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.58;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7098;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 47853843 rs6822668 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7262;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 47857040 rs7690499 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.07;AMR_AF=0.40;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.2514;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 47887536 rs2053404 T C 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7267;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 47887991 rs6818556 G A 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7267;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 47898491 rs6447592 C T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.65;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7267;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 47951945 rs1972883 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8875;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 47953515 rs3845160 A T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8881;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 48069696 rs2230594 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.32;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.4785;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48069725 rs9996535 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.32;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.4785;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48073501 rs906486 G T 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.69;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8816;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48076091 rs55781011 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0535;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 48082095 rs11724347 C T 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0348;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 48088446 rs6858664 A G 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.59;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 48115264 rs7658300 C T 100 PASS AA=c;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.37;LDAF=0.2080;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48139565 rs2661529 C A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.80;AMR_AF=0.82;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8259;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48147309 rs17574371 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.33;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.2376;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48147612 rs2661547 T G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.83;AMR_AF=0.84;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8419;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48148435 rs3749503 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.43;LDAF=0.3615;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48169769 rs7689953 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.63;AMR_AF=0.80;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7906;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48170669 rs2243840 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8418;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48384991 rs1565221 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0353;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 48424058 rs17609614 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0352;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 48486193 rs6845250 C G 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.19;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.1600;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48492434 rs10008444 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9803;ERATE=0.0014;EUR_AF=1.00;LDAF=0.9721;RSQ=0.7499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-1.98,-0.40,-0.23 +4 48494924 rs17609740 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0311;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 48537633 rs56173927 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.32;AMR_AF=0.62;AN=2;ASN_AF=0.51;AVGPOST=0.9228;ERATE=0.0472;EUR_AF=0.54;LDAF=0.4975;RSQ=0.8679;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.95,-0.00,-5.00 +4 48545814 rs10517225 A T 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0297;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 48577121 rs28558226 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9941;ERATE=0.0053;EUR_AF=1.00;LDAF=0.9749;RSQ=0.9119;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 48582836 rs4695390 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9856;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 48588742 rs34558821 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.60;AMR_AF=0.31;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4704;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48625213 rs776579 C A 100 PASS AA=-;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9798;RSQ=0.9619;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 48851937 rs3761729 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.28;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.4570;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 48994138 rs28678278 G T 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.19;AMR_AF=0.77;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5023;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 49000599 rs146230326 T A 100 PASS AA=T;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.0026;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 49019232 rs28610228 T A 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.26;LDAF=0.1852;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 49063872 rs1051447 C A 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.22;AMR_AF=0.78;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5479;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 52896050 rs225170 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.11;AMR_AF=0.64;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4218;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 52927113 rs999634 C A 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.10;AMR_AF=0.67;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4346;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 52938243 rs3860707 T C 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.08;AMR_AF=0.68;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4612;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 54011603 rs17082453 C T 100 PASS AA=c;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.18;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 54232110 rs1351514 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1403;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 54245476 rs75361204 A T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9771;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 54257131 rs10517296 A T 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.15;LDAF=0.1742;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 54310188 rs11722866 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.22;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 54310281 rs11723755 T G 100 PASS AA=t;AC=1;AF=0.51;AFR_AF=0.26;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5151;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 54327235 rs3811785 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.22;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5050;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 54327584 rs3765158 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.68;AMR_AF=0.64;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6690;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 54373464 rs10021772 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.44;AMR_AF=0.37;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3885;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 54966667 rs3194383 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.33;AMR_AF=0.69;AN=2;ASN_AF=0.83;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6171;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +4 54966830 rs13144341 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9922;RSQ=0.8553;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +4 54966919 rs1132998 T C 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.32;AMR_AF=0.69;AN=2;ASN_AF=0.81;AVGPOST=0.9829;ERATE=0.0012;EUR_AF=0.61;LDAF=0.6076;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +4 54967709 rs2278142 C A 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.33;AMR_AF=0.69;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6176;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +4 55130078 rs2229307 T C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2016;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 55133726 rs4358459 T G 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.24;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1989;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 55133936 rs28489067 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.23;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9986;ERATE=0.0013;EUR_AF=0.13;LDAF=0.1946;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 55139771 rs35597368 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1654;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 55141055 rs1873778 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=1.00;LDAF=0.9634;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 55143577 rs10028020 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.32;AMR_AF=0.22;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0016;EUR_AF=0.12;LDAF=0.1950;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 55152040 rs2228230 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2084;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 55161254 rs3733540 C T 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.46;AMR_AF=0.74;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7381;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 55161391 rs7685117 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 55946081 rs4421048 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 55948108 rs2412617 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 55968053 rs7655964 A C 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.13;AMR_AF=0.52;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3317;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 55991461 rs56233104 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9980;ERATE=0.0006;EUR_AF=0.05;LDAF=0.0249;RSQ=0.9703;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 56262374 rs1128141 A G 100 PASS AA=a;AC=2;AF=0.71;AFR_AF=0.80;AMR_AF=0.69;AN=2;ASN_AF=0.72;AVGPOST=0.9528;ERATE=0.0020;EUR_AF=0.64;LDAF=0.7025;RSQ=0.9077;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +4 56309992 rs3736544 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.76;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7043;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 56465271 rs73236157 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0389;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +4 56471404 rs1873090 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1516;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 56471433 rs1873091 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1412;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 56475338 rs3805383 G A 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1901;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 56734701 rs3213948 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5914;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 56756531 rs2290016 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.26;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3423;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 56830605 rs62308567 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0589;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 56874517 rs3214045 A C 100 PASS AA=a;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1645;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 56878193 rs11724411 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1700;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57176832 rs79868722 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0683;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57180473 rs6823339 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.37;AMR_AF=0.31;AN=2;ASN_AF=0.06;AVGPOST=0.9969;ERATE=0.0008;EUR_AF=0.42;LDAF=0.2957;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57180616 rs11723379 G C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.40;AMR_AF=0.31;AN=2;ASN_AF=0.06;AVGPOST=0.9810;ERATE=0.0027;EUR_AF=0.41;LDAF=0.2915;RSQ=0.9667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-1.72,-0.01,-5.00 +4 57181632 rs7672073 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9870;RSQ=0.9368;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 57182901 rs73159954 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.21;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0844;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57189498 rs2292985 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.34;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=0.63;LDAF=0.5424;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57190242 rs2292983 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.11;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2229;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57190356 rs7695701 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2340;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57193762 rs6826795 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.72;AMR_AF=0.75;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7111;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 57208955 rs9996468 A T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.54;AMR_AF=0.49;AN=2;ASN_AF=0.37;AVGPOST=0.9929;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4879;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.10 +4 57215677 rs3796544 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2784;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57219523 rs6554347 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.37;AMR_AF=0.37;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3962;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57219592 rs6554348 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.71;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6219;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57221348 rs3796543 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0727;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57237683 rs6554354 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2783;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57248716 rs34228795 G C 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0722;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57250285 rs34543011 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0722;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57272620 rs2271923 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2884;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57273840 rs11538098 C G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2642;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57349282 rs7700034 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.57;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57356588 rs17086879 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0722;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57367809 rs76774105 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0754;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57522220 rs4626270 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.70;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9861;ERATE=0.0024;EUR_AF=0.48;LDAF=0.4854;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.10,-0.70,-5.00 +4 57843320 rs4865167 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9987;RSQ=0.6956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +4 57876955 rs1718878 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.39;AMR_AF=0.33;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3405;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57881715 rs1713982 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.38;AMR_AF=0.33;AN=2;ASN_AF=0.29;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.35;LDAF=0.3392;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 57883175 rs1718866 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9168;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 57889677 rs1056364 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.52;AMR_AF=0.60;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5992;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 57906986 rs3755906 A T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2957;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 65145955 rs1483711 T G 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9701;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 65146711 rs1483709 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 65165661 rs11935568 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9310;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 66197804 rs7349683 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.33;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3108;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 66218728 rs3792649 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.48;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 66233029 rs2198104 A G 100 PASS AA=A;AC=2;AF=0.40;AFR_AF=0.06;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3967;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +4 66270241 rs3749525 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1312;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 66280171 rs2305351 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 66509194 rs4343775 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.58;AMR_AF=0.66;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 68360955 rs2646282 A G 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.76;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=0.9967;ERATE=0.0007;EUR_AF=0.90;LDAF=0.8797;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +4 68374597 rs1056789 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.62;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6877;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 68380215 rs11250 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.62;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6878;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 68384008 rs355510 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.57;AMR_AF=0.72;AN=2;ASN_AF=0.80;AVGPOST=0.9633;ERATE=0.0322;EUR_AF=0.57;LDAF=0.6494;RSQ=0.9472;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 68396525 rs355477 G C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.63;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6891;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 68436883 rs13111555 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.75;AMR_AF=0.77;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7244;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 68441091 rs2306810 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1523;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 68442968 rs11556614 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.47;AMR_AF=0.45;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4333;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 68447200 rs2242331 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2688;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 68490019 rs10454253 C T 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2080;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 68492060 rs34742870 A G 100 PASS AA=A;AC=2;AF=0.21;AFR_AF=0.17;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2121;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 68514739 rs3849642 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.17;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1728;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 68562365 rs17572160 A G 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2080;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +4 68610251 rs17088591 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0348;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 68777054 rs12646286 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2628;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 68780399 rs1371932 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.33;AMR_AF=0.45;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5079;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 68784774 rs353163 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.86;AMR_AF=0.60;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7317;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 68788694 rs353159 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.87;AMR_AF=0.59;AN=2;ASN_AF=0.82;AVGPOST=0.9865;ERATE=0.0069;EUR_AF=0.63;LDAF=0.7252;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.08,-0.04,-5.00 +4 68812283 rs11930532 C T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.26;AMR_AF=0.66;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6553;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 68919617 rs10018943 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.39;AMR_AF=0.60;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6714;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 68934306 rs10004522 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.31;AMR_AF=0.60;AN=2;ASN_AF=0.86;AVGPOST=0.9894;ERATE=0.0074;EUR_AF=0.72;LDAF=0.6429;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69094507 rs2319797 T A 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.65;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7185;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69094575 rs2319796 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9966;RSQ=0.9664;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69095197 rs12331141 T C 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.42;AMR_AF=0.65;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7176;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69203080 rs118034479 T C 100 PASS AA=T;AC=1;AF=0.08;AMR_AF=0.05;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0786;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 69203551 rs115354718 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69203646 rs115010638 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0418;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 69340500 rs145348409 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.59;AMR_AF=0.47;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5642;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 69342169 rs143061496 G C 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.57;AMR_AF=0.47;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5594;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 69343287 rs139555919 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.23;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1851;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 69343353 rs149380523 A G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.63;AMR_AF=0.74;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7043;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69344733 rs143756978 G T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.63;AMR_AF=0.74;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7043;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69416556 rs13102139 T C 100 PASS AA=T;AC=2;AF=0.15;AFR_AF=0.04;AMR_AF=0.35;AN=2;ASN_AF=0.0035;AVGPOST=0.9570;ERATE=0.0050;EUR_AF=0.22;LDAF=0.1631;RSQ=0.9100;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +4 69433714 rs34664906 C T 100 PASS AA=c;AC=2;AF=0.30;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.16;AVGPOST=0.9062;ERATE=0.0006;EUR_AF=0.36;LDAF=0.3292;RSQ=0.8693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69434217 rs148387263 G A 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=0.9540;ERATE=0.0007;EUR_AF=0.99;LDAF=0.9690;RSQ=0.4378;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.01 +4 69513115 rs139488408 A G 100 PASS AA=a;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0352;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 69536084 rs141137354 A C 100 PASS AA=N;AC=1;AF=0.56;AFR_AF=0.64;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5626;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 69795626 rs139709914 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.48;AMR_AF=0.63;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.84;LDAF=0.6836;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.30,-0.02 +4 69796838 rs115947394 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.50;AMR_AF=0.90;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7997;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +4 69817080 rs115181167 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.26;AMR_AF=0.20;AN=2;ASN_AF=0.35;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2492;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 69962610 rs28365063 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1431;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 69964209 rs7438244 A G 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6435;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69964337 rs7438284 A T 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.59;AMR_AF=0.58;AN=2;ASN_AF=0.62;AVGPOST=0.9860;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5316;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 69972949 rs4292394 C G 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.74;AMR_AF=0.60;AN=2;ASN_AF=0.68;AVGPOST=0.9842;ERATE=0.0115;EUR_AF=0.47;LDAF=0.6072;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 70146230 rs13139691 G A 100 PASS AA=-;AC=1;AF=0.66;AFR_AF=0.55;AMR_AF=0.69;AN=2;ASN_AF=0.58;AVGPOST=0.9783;ERATE=0.0006;EUR_AF=0.78;LDAF=0.6595;RSQ=0.9690;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.49 +4 70146804 rs148987832 G C 100 PASS AA=-;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9733;ERATE=0.0021;EUR_AF=0.19;LDAF=0.1065;RSQ=0.9140;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +4 70346564 rs13142440 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.20;AN=2;AVGPOST=0.9967;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1191;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 70346565 rs13119049 A T 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.20;AN=2;AVGPOST=0.9968;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1192;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 70355211 rs1845555 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 70465153 rs3775782 A T 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 70512773 rs41292307 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0681;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 70512801 rs55864295 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0681;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 70513139 rs1347046 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 70800377 rs77374532 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.11;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.09;LDAF=0.0849;RSQ=0.9785;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 70802218 rs962689 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.08;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1522;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 70807747 rs62305467 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.08;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1524;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.99,-0.00,-5.00 +4 70807771 rs10030475 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.43;AN=2;ASN_AF=0.25;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3460;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 70898953 rs1136515 C T 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.32;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5328;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 71110639 rs13103289 G A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3267;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71114956 rs1048152 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.12;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1517;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 71115053 rs3775740 T A 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0868;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71115152 rs3775738 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3273;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71201388 rs1351419 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.77;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9218;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 71201943 rs13039 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1933;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 71227802 rs1842478 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.33;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5446;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.73 +4 71232388 rs10031844 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.26;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2619;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71232430 rs10024123 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9493;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 71232701 rs6853742 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.78;AMR_AF=0.69;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6888;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 71232742 rs3775732 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.26;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2605;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71250308 rs2233586 T A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.83;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9861;ERATE=0.0108;EUR_AF=0.94;LDAF=0.9299;RSQ=0.9408;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.26,-0.00 +4 71255370 rs7674958 A T 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.77;AMR_AF=0.68;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6851;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 71255593 rs2988 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.77;AMR_AF=0.68;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6856;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 71339723 rs2306949 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.28;AMR_AF=0.12;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1755;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71339728 rs2306948 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.28;AMR_AF=0.12;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1755;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71346701 rs6826961 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2756;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71384488 rs28674149 C T 100 PASS AA=T;AC=1;AF=0.88;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8830;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71389669 rs3912755 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.43;AMR_AF=0.19;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2208;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71468396 rs35859385 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1097;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71468985 rs35266919 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1093;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 71698183 rs4694081 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9902;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 71892513 rs1486271 A T 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.34;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8038;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 72121163 rs4694388 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.27;AMR_AF=0.22;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2537;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 72313411 rs34373561 C T 100 PASS AA=c;AC=1;AF=0.03;AMR_AF=0.14;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0320;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 72423624 rs1453474 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.63;AMR_AF=0.89;AN=2;ASN_AF=0.74;AVGPOST=0.9986;ERATE=0.0017;EUR_AF=0.96;LDAF=0.8168;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 72425863 rs1453458 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.62;AMR_AF=0.88;AN=2;ASN_AF=0.74;AVGPOST=0.9977;ERATE=0.0029;EUR_AF=0.96;LDAF=0.8129;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 72433545 rs1062677 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.09;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1587;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 72618296 rs9016 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9940;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 72618334 rs7041 A C 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.10;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3862;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 72622403 rs222033 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +4 72629669 rs56097748 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0261;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 73175093 rs10024487 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 73414286 rs788908 C T 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.86;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6892;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 73942678 rs2306058 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1756;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 73991006 rs6822576 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9972;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 74014809 rs1534450 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.19;AMR_AF=0.52;AN=2;ASN_AF=0.51;AVGPOST=0.9990;ERATE=0.0006;EUR_AF=0.43;LDAF=0.4127;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 74017201 rs35591466 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0055;RSQ=0.9444;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 74285239 rs962004 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.43;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5018;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 74302071 rs3796678 T A 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.48;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5169;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 74302870 rs16849384 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.34;AMR_AF=0.53;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4264;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 74310844 rs2298839 A G 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.46;AMR_AF=0.47;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5475;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 74313169 rs7667494 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 74318330 rs4235117 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9808;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 74357851 rs11733262 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.41;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.5878;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 74442349 rs17804499 G C 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0297;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 74447510 rs1247671 A C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.91;AVGPOST=0.9931;ERATE=0.0109;EUR_AF=0.75;LDAF=0.7787;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 74451073 rs12507775 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2514;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 74451092 rs12508661 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.31;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.1618;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 74453656 rs10019146 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2509;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 74453691 rs10011419 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2510;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 74486264 rs1247590 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9840;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +4 74735150 rs11547681 G T 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.32;AVGPOST=0.9791;ERATE=0.0022;EUR_AF=0.17;LDAF=0.2270;RSQ=0.9558;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|1:2.000:-3.55,-0.50,-0.16 +4 74735244 rs2071425 A G 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.54;AMR_AF=0.37;AN=2;ASN_AF=0.38;AVGPOST=0.9796;ERATE=0.0015;EUR_AF=0.17;LDAF=0.3412;RSQ=0.9653;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.13,-0.03 +4 74847292 rs352007 G C 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.52;AMR_AF=0.89;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8218;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.67,-0.01 +4 74863997 rs425535 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.53;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8236;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 75248434 rs2367707 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.78;AMR_AF=0.81;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0011;EUR_AF=0.82;LDAF=0.7751;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 75248544 rs2367708 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.88;AMR_AF=0.83;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8007;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 75673363 rs4585380 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.24;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.24;LDAF=0.1814;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 75675841 rs11938093 A T 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.23;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1793;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 75681217 rs11734944 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.32;AMR_AF=0.47;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 76416779 rs2045863 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.79;AMR_AF=0.61;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6662;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 76785716 rs1394913 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76785723 rs1394914 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 76793228 rs1394916 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76794345 rs6858658 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76804067 rs4859564 A G 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.47;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8693;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76805902 rs1976518 C T 100 PASS AA=c;AC=2;AF=0.88;AFR_AF=0.54;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8803;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76805962 rs1976517 G A 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.54;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76809319 rs7691712 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.58;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8940;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76809386 rs7691755 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9959;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76817412 rs11731367 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1618;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 76836137 rs6823734 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.97;AMR_AF=0.73;AN=2;ASN_AF=0.51;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.70;LDAF=0.7152;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 76861137 rs6847716 G C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.50;AMR_AF=0.81;AN=2;ASN_AF=0.94;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.93;LDAF=0.8168;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 76861859 rs2292533 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9957;ERATE=0.0006;EUR_AF=0.44;LDAF=0.2590;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +4 76878716 rs2242471 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2532;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 76878956 rs2242473 G A 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2532;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 76878982 rs2242474 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2532;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 76903036 rs10008757 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.78;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7463;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 76943137 rs4859584 G C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.71;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7020;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 76944491 rs4241578 T C 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.71;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7019;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 76955914 rs6532111 T C 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.71;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7021;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 76956188 rs4241580 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.71;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7020;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 76956528 rs4859415 A G 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.71;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7019;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 76957171 rs6819597 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.75;AMR_AF=0.71;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7020;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 77021433 rs6532189 C T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.43;AMR_AF=0.27;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3337;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 77021915 rs72655511 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.23;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0987;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 77025136 rs11097233 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1032;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 77033531 rs72655520 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0109;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 77053834 rs61750814 T C 100 PASS AA=T;AC=2;AF=0.15;AFR_AF=0.19;AMR_AF=0.24;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1458;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 77274242 rs12504985 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.36;AMR_AF=0.74;AN=2;ASN_AF=0.76;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6135;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 77290561 rs72657825 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2364;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 77303898 rs6844174 C T 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.80;AMR_AF=0.91;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8665;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 77305201 rs149175410 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0152;RSQ=0.9685;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 77660162 rs344140 G C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.67;AMR_AF=0.73;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6655;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 77660731 rs344141 C G 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.52;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4721;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 77662248 rs60216375 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.46;AMR_AF=0.52;AN=2;ASN_AF=0.26;AVGPOST=0.9907;ERATE=0.0009;EUR_AF=0.60;LDAF=0.4686;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +4 77662309 rs344143 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.46;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9922;ERATE=0.0005;EUR_AF=0.44;LDAF=0.3943;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +4 77675505 rs3733242 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.73;AMR_AF=0.44;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5129;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 77675925 rs61741104 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0382;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 77871016 rs873090 T G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.71;AMR_AF=0.70;AN=2;ASN_AF=0.46;AVGPOST=0.9788;ERATE=0.0007;EUR_AF=0.62;LDAF=0.6137;RSQ=0.9650;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.70,-0.52,-0.16 +4 78669454 rs6855336 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8632;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 78873605 rs35979107 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.28;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3076;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 78873629 rs17002849 G A 100 PASS AA=g;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.28;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3071;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 79494430 rs5945 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.17;AMR_AF=0.09;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1577;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 79512800 rs10003947 T A 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.31;AMR_AF=0.60;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6526;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 79525404 rs5942 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.10;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1764;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 79531202 rs5950 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1636;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 79786856 rs2288255 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0823;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 79800080 rs10518205 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1115;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 79831736 rs17003500 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1101;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 79832486 rs189080275 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 79832509 rs12649750 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1125;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 79832706 rs12507099 C G 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.24;AVGPOST=0.9890;ERATE=0.0013;EUR_AF=0.10;LDAF=0.1280;RSQ=0.9644;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 79845007 rs13108247 C A 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.72;AMR_AF=0.73;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7436;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 79851526 rs2306443 G C 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.06;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1124;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 80329343 rs6837906 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.29;AN=2;ASN_AF=0.47;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.15;LDAF=0.2546;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 80828668 rs10027070 A T 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.03;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2756;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 80905990 rs12647691 C G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.71;AMR_AF=0.81;AN=2;ASN_AF=0.96;AVGPOST=0.9939;ERATE=0.0036;EUR_AF=0.68;LDAF=0.7796;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 80977078 rs4594664 T G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.52;AMR_AF=0.74;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7042;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 81124596 rs12780 G C 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3557;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +4 81884722 rs1052325 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.68;AMR_AF=0.83;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8281;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 81967188 rs6831040 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8148;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83582064 rs3733228 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.10;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.30;LDAF=0.3303;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 83582211 rs3733227 C G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6157;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83765605 rs11541628 C A 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0146;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 83788139 rs2290739 C A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.64;AMR_AF=0.80;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7326;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83788344 rs2045478 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83793243 rs4693525 A C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.64;AMR_AF=0.80;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7335;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83793274 rs4693059 A C 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0110;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 83795806 rs10025654 T C 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.08;AMR_AF=0.63;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3894;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83838217 rs1031639 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83838262 rs897945 G T 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.07;AMR_AF=0.61;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.56;LDAF=0.3673;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83839799 rs6535411 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83852065 rs985899 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 83857402 rs6535415 T C 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.22,-0.00 +4 83900043 rs6535422 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84223461 rs4285078 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0032;EUR_AF=1.00;LDAF=0.9761;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0226;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84230619 rs11099592 T C 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.87;AMR_AF=0.73;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8076;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84232019 rs12512551 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.07;AN=2;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0119;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 84234229 rs6840520 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.87;AMR_AF=0.73;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8077;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84240654 rs12501123 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.87;AMR_AF=0.73;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8080;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84362443 rs4693088 T G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.85;AMR_AF=0.58;AN=2;ASN_AF=0.65;AVGPOST=0.9803;ERATE=0.0101;EUR_AF=0.43;LDAF=0.6017;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84364751 rs7665103 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.42;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.40;LDAF=0.4880;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84364808 rs6535473 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.37;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5155;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +4 84367286 rs11099600 G A 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.51;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5516;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84370091 rs13141136 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.11;AMR_AF=0.49;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4149;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 84374480 rs1494961 C T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.82;AMR_AF=0.61;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6257;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84376743 rs6831595 A T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9734;ERATE=0.0161;EUR_AF=0.99;LDAF=0.9746;RSQ=0.5992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84380955 rs12505955 G T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.15;AMR_AF=0.50;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4228;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84383810 rs12642536 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.15;AMR_AF=0.50;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4227;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 84393475 rs6535478 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.88;AMR_AF=0.61;AN=2;ASN_AF=0.65;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.49;LDAF=0.6403;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +4 84515968 rs3733327 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2255;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 84518558 rs3733329 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2245;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 84519828 rs62303973 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.05;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0291;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 85414433 rs111907596 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.36;AMR_AF=0.16;AN=2;ASN_AF=0.19;AVGPOST=0.7239;ERATE=0.0733;EUR_AF=0.13;LDAF=0.2846;RSQ=0.3843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.100:-2.13,-0.41,-0.22 +4 85569679 rs144066823 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 85612737 rs3747680 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3487;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 85612894 rs17368018 T C 100 PASS AA=T;AC=1;AF=0.0032;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0032;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +4 85762338 rs187506570 G A 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 85762385 rs2046402 T C 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.51;AMR_AF=0.44;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4413;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 87024409 rs28529458 T C 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.31;AMR_AF=0.67;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.70;LDAF=0.6219;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 87679513 rs71605616 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.10;AVGPOST=0.9984;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0947;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 87684031 rs710832 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.81;AMR_AF=0.78;AN=2;ASN_AF=0.68;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.71;LDAF=0.7371;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 87690998 rs2230600 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.33;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.16;LDAF=0.1846;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 87706506 rs989902 T G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.79;AMR_AF=0.50;AN=2;ASN_AF=0.42;AVGPOST=0.9949;ERATE=0.0005;EUR_AF=0.39;LDAF=0.5070;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 87728676 rs17694112 A C 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.31;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1801;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 87754419 rs10050311 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.29;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1809;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 87754547 rs141195238 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0092;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 87809387 rs1550931 G T 100 PASS AA=T;AC=1;AF=0.90;AFR_AF=0.66;AMR_AF=0.96;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8962;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 87812564 rs10011798 G C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.42;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.3492;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 88029482 rs3733377 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.19;LDAF=0.2155;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 88052219 rs342467 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.52;AMR_AF=0.68;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 88226480 rs6850131 A C 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.66;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4544;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 88239609 rs13118664 A T 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2010;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 88258483 rs9991501 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9876;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 88356111 rs28736552 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.17;AMR_AF=0.34;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.39;LDAF=0.2613;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 88363087 rs79569855 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0232;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 88401616 rs9933 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.89;AMR_AF=0.76;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6970;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 88416223 rs8342 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.91;AMR_AF=0.76;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.60;LDAF=0.7002;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 88533441 rs13131929 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.17;AMR_AF=0.54;AN=2;ASN_AF=0.66;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4998;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 88533445 rs13131936 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.21;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2090;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 88534235 rs2736982 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.66;LDAF=0.6695;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 88583135 rs10019009 A T 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.27;AMR_AF=0.35;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3104;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 88732531 rs4693878 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.91;AMR_AF=0.76;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7422;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 88732692 rs1054627 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.1855;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 88732746 rs13144371 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.91;AMR_AF=0.76;AN=2;ASN_AF=0.59;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7418;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 88732763 rs17013181 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.43;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2647;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 88732911 rs1054628 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.12;LDAF=0.2185;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 88732918 rs1054629 A T 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.1847;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 88755828 rs7698623 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.97;AMR_AF=0.97;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9237;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 88959381 rs2725221 G A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.94;AMR_AF=0.65;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6929;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0122;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 89016782 rs2231162 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.53;AMR_AF=0.80;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.7911;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 89020427 rs2231156 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1193;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 89022362 rs2231153 C T 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.27;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.7216;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 89052323 rs2231142 G T 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1389;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 89053718 rs2231138 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0763;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89060909 rs4148152 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.19;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1358;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89061114 rs2231137 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1399;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89300127 rs61997163 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.08;AN=2;AVGPOST=0.9971;ERATE=0.0004;LDAF=0.0147;RSQ=0.9085;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +4 89311962 rs12510688 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.09;AVGPOST=0.9992;ERATE=0.0012;EUR_AF=0.10;LDAF=0.0929;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89319296 rs17014118 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.81;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=0.9894;ERATE=0.0007;EUR_AF=0.16;LDAF=0.4956;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +4 89397091 rs7699006 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.79;AMR_AF=0.44;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.33;LDAF=0.5695;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 89415396 rs6857425 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 89575324 rs2860427 T A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.89;AMR_AF=0.28;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4881;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89577214 rs2972040 A T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.65;AMR_AF=0.25;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4109;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89588689 rs3017921 C T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.81;AMR_AF=0.29;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4781;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89607905 rs3737488 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1481;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89618837 rs710834 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.71;AMR_AF=0.36;AN=2;ASN_AF=0.58;AVGPOST=0.9922;ERATE=0.0008;EUR_AF=0.38;LDAF=0.4993;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89625427 rs1804080 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.19;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1924;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89649659 rs9224 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.44;AN=2;ASN_AF=0.86;AVGPOST=0.9983;ERATE=0.0175;EUR_AF=0.35;LDAF=0.5963;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89653257 rs1801915 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.18;AMR_AF=0.18;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1869;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89668859 rs7657817 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.43;AMR_AF=0.21;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2573;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 89670155 rs3756050 C T 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.79;AMR_AF=0.28;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 90034686 rs17015027 A G 100 PASS AA=a;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.24;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2372;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 90168882 rs13115988 G A 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.42;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9984;ERATE=0.0109;EUR_AF=0.33;LDAF=0.4499;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 90169925 rs7653897 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.73;AMR_AF=0.37;AN=2;ASN_AF=0.58;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5669;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 90170118 rs28622301 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.14;AVGPOST=0.9989;ERATE=0.0013;EUR_AF=0.13;LDAF=0.1009;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 91389444 rs187207325 A G 100 PASS AA=A;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0020;RSQ=0.9267;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 93511481 rs2870639 G A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.40;AMR_AF=0.42;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3816;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 94032125 rs78495618 G C 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.58;AMR_AF=0.62;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5233;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 94316763 rs1385405 T G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.96;AMR_AF=0.62;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.61;LDAF=0.7174;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 94750058 rs10009502 C G 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.17;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3004;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 95170839 rs11722476 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.20;AMR_AF=0.49;AN=2;ASN_AF=0.72;AVGPOST=0.9962;ERATE=0.0036;EUR_AF=0.39;LDAF=0.4476;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 95173779 rs7439869 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.96;AMR_AF=0.68;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7129;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.31,-0.02 +4 95185854 rs10029551 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1083;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 95186055 rs2306802 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.09;AMR_AF=0.36;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3369;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 95197520 rs6823404 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.36;AMR_AF=0.63;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5686;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 95229745 rs55710447 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.14;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1111;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 95255637 rs2289186 T G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.80;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.65;LDAF=0.5663;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 95500628 rs3828518 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.31;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2000;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 95503902 rs5013417 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.07;AMR_AF=0.52;AN=2;ASN_AF=0.43;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3620;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 95506842 rs11097431 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.30;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.22;LDAF=0.1970;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 95539267 rs966845 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9973;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 95561459 rs7690296 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.44;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3542;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 95575601 rs2280003 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.24;AMR_AF=0.26;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3084;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 95578588 rs13107595 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9895;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 96073956 rs1365691 A T 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.29;AMR_AF=0.58;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.56;LDAF=0.4479;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +4 96091524 rs2241743 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.57;AMR_AF=0.63;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5214;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 96106322 rs2289043 A G 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.09;AMR_AF=0.72;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0016;EUR_AF=0.72;LDAF=0.5446;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 96123981 rs3733212 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.72;AMR_AF=0.59;AN=2;ASN_AF=0.36;AVGPOST=0.9991;ERATE=0.0047;EUR_AF=0.71;LDAF=0.5994;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 96127869 rs2276322 T G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.59;AMR_AF=0.56;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5589;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 96256616 rs4699423 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.14;AMR_AF=0.52;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5012;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 96256673 rs1843018 G A 100 PASS AA=A;AC=1;AF=0.81;AFR_AF=0.57;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8140;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 96761256 rs11725710 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.0880;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 98761900 rs11735193 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.38;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3779;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 98893437 rs783960 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.42;AMR_AF=0.52;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4058;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 98893476 rs783959 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.42;AMR_AF=0.52;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 98902278 rs35146453 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.42;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3880;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 99027137 rs2865979 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3478;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 99027184 rs2903150 T C 100 PASS AA=t;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3478;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 99027218 rs2903151 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3476;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 99049593 rs17558193 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3473;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 99055480 rs13328005 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.39;LDAF=0.3456;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 100045574 rs1042364 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.73;LDAF=0.8582;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 100045616 rs1126673 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.76;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.8204;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100045647 rs2602894 A G 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.8583;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +4 100047929 rs10009145 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.45;LDAF=0.2609;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100048327 rs9307234 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9614;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100048414 rs1126671 T C 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.76;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.8199;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100048506 rs6836440 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9616;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100052733 rs1126670 C A 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.76;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.8199;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100062819 rs2032349 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9616;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100128753 rs4147545 T C 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.60;AMR_AF=0.46;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.35;LDAF=0.5670;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 100140306 rs4699735 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100235053 rs1789882 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.78;AMR_AF=0.80;AN=2;ASN_AF=0.93;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8457;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 100239319 rs1229984 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=0.27;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.98;LDAF=0.7893;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100341643 rs1154460 G A 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.44;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4449;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 100341861 rs971074 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1403;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100356337 rs1154470 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.38;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2579;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 100443782 rs13119384 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.93;AMR_AF=0.37;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4813;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100443853 rs17029090 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.25;AMR_AF=0.06;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100445786 rs7697177 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.21;AMR_AF=0.06;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1289;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100504575 rs2306986 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.06;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100510859 rs991811 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.79;AMR_AF=0.29;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.5087;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100510903 rs3792683 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1225;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100512412 rs982424 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.24;AMR_AF=0.08;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.1495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 100512433 rs150319930 T G 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 100516022 rs2306985 C G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.78;AMR_AF=0.29;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.5069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 102019648 rs142836504 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 102839362 rs3733198 A T 100 PASS AA=a;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=0.87;AVGPOST=0.9635;ERATE=0.0363;EUR_AF=0.93;LDAF=0.9029;RSQ=0.8374;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 102965043 rs3113676 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9965;RSQ=0.9617;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 103188709 rs13107325 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0343;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 103225513 rs11097773 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1312;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 103228545 rs1462947 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.29;AMR_AF=0.29;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2495;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 103228734 rs35411892 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1522;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 103514658 rs1609993 T C 100 PASS AA=t;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9584;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 103555992 rs2272697 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.63;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5513;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 103557077 rs2866413 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.63;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5511;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 103557192 rs4547797 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.63;AMR_AF=0.62;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5511;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 103610872 rs227365 A G 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.38;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6202;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 103611845 rs227368 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3964;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 103911069 rs2715591 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 104000922 rs12508269 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.0020;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0968;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 104003993 rs56412006 A C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2276;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 104013796 rs1054707 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1275;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 104061266 rs7686105 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1394;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 104061993 rs1381657 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.21;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1700;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 104062223 rs1381658 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1390;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 104063071 rs2711898 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.68;AMR_AF=0.37;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4310;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 104079424 rs2251322 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.68;AMR_AF=0.37;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4314;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 104082349 rs2251634 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.68;AMR_AF=0.37;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4315;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 106317429 rs13787 C G 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.10;AMR_AF=0.45;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4452;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 106359209 rs2713862 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.39;AN=2;ASN_AF=0.53;AVGPOST=0.9812;ERATE=0.0637;EUR_AF=0.37;LDAF=0.3665;RSQ=0.9707;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 106474096 rs6533206 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 106819053 rs34712979 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.14;AN=2;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1072;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 106861730 rs4340795 A G 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.72;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.92;LDAF=0.8944;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 107115960 rs12506062 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.22;AMR_AF=0.16;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1796;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 107133919 rs17036613 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.28;AMR_AF=0.16;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1938;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 107156462 rs34961213 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=0.9993;ERATE=0.0015;EUR_AF=0.17;LDAF=0.1300;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 107168431 rs3775091 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 107246136 rs3737498 C A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.15;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1659;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 107268876 . G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +4 108622475 rs13110240 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4676;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 108641300 rs973126 T C 100 PASS AA=C;AC=1;AF=0.89;AFR_AF=0.85;AMR_AF=0.90;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8903;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 108641317 rs1127006 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.31;AMR_AF=0.50;AN=2;ASN_AF=0.43;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4747;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 108868515 rs6856745 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.73;AMR_AF=0.63;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6540;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 108931039 rs4956145 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8917;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 108999366 rs4956157 G A 100 PASS AA=g;AC=2;AF=0.77;AFR_AF=0.33;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7655;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 109576843 rs2851380 G T 100 PASS AA=.;AC=2;AF=0.86;AFR_AF=0.84;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8569;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 109578572 rs2851379 G A 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 109735133 rs2305436 T C 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.35;AMR_AF=0.53;AN=2;ASN_AF=0.47;AVGPOST=0.9869;ERATE=0.0130;EUR_AF=0.61;LDAF=0.4998;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 109762918 rs11942576 C A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.54;AMR_AF=0.69;AN=2;ASN_AF=0.62;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.64;LDAF=0.6176;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 109769899 rs13135591 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.59;AMR_AF=0.83;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7892;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 109969337 rs79275327 G T 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.77;AMR_AF=0.54;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5846;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110384790 rs33911248 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0663;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 110446454 rs6812906 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.98;AMR_AF=0.62;AN=2;ASN_AF=0.70;AVGPOST=0.9919;ERATE=0.0006;EUR_AF=0.58;LDAF=0.7029;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 110454861 rs34133579 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0449;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 110603784 rs3733611 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.83;AMR_AF=0.62;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6586;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110605744 rs13846 A T 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.29;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2276;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110619534 rs2301717 T G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.88;AMR_AF=0.59;AN=2;ASN_AF=0.56;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.62;LDAF=0.6614;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 110638810 rs2285714 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.03;AMR_AF=0.37;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.42;LDAF=0.2703;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110663642 rs114013791 C A 100 PASS AA=C;AC=1;AF=0.0037;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0043;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 110670807 rs7441380 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9698;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110678925 rs11098044 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9675;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110681505 rs2298749 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3204;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110737389 rs2276326 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.71;AMR_AF=0.60;AN=2;ASN_AF=0.91;AVGPOST=0.9972;ERATE=0.0020;EUR_AF=0.74;LDAF=0.7555;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110737549 rs6828254 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110745095 rs13109228 G A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2866;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110754499 rs12513108 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.24;AMR_AF=0.34;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2751;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110757224 rs61747002 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0930;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110757287 rs61744555 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1325;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110758551 rs4698750 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.33;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2330;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110765361 rs7681770 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9662;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110765372 rs7657133 A G 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.62;AMR_AF=0.65;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.6956;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 110790911 rs764205 A T 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.38;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 110791361 rs2347131 G A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2377;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110791413 rs2347132 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2381;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110791543 rs2347133 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2377;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110865271 rs10470911 T G 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.28;AMR_AF=0.45;AN=2;ASN_AF=0.28;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3260;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.85 +4 110866442 rs4698756 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.46;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4208;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 110883121 rs11568943 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.30;AMR_AF=0.10;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1627;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110901198 rs2237051 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.85;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5937;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 110902111 rs11569017 A T 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0914;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110902166 rs11569018 G A 100 PASS AA=g;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 110914427 rs4698803 A T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.80;LDAF=0.9117;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 111398208 rs10004516 A G 100 PASS AA=A;AC=1;AF=0.86;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=0.82;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8634;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 111474659 rs12501626 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 113199075 rs701759 A G 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.89;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6755;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 113350415 rs11944513 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2242;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 113352397 rs2074388 G A 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.70;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6381;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 113352628 rs13148353 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.72;AMR_AF=0.58;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 113352899 rs2074379 G A 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.70;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6385;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 113353285 rs11726117 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.72;AMR_AF=0.58;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6745;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 113356259 rs3815071 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.19;AMR_AF=0.28;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3355;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 113359703 rs231247 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.73;AMR_AF=0.57;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6768;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 113436044 rs901474 T G 100 PASS AA=G;AC=1;AF=0.93;AFR_AF=1.00;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.85;LDAF=0.9328;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.08,-0.78 +4 113570878 rs118095673 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.07;AVGPOST=0.9919;ERATE=0.0287;EUR_AF=0.04;LDAF=0.0507;RSQ=0.9370;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 113570885 rs7656819 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.37;AMR_AF=0.05;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.1060;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 114209691 rs29357 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0791;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 114267023 rs9968405 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.8999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 114421712 rs17446453 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.28;LDAF=0.1549;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 115544714 rs6851610 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9824;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 115589302 rs11098261 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9926;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 115589441 rs148890217 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0004;LDAF=0.0184;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 115749005 rs6843860 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.52;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2587;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 115751064 rs12648047 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.09;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.05;LDAF=0.1111;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 115769330 rs10022934 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.40;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2119;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 115792154 rs17047425 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.09;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1001;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-3.09,-0.00,-5.00 +4 118975146 rs13152576 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1551;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 119064668 rs3749506 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.38;AMR_AF=0.80;AN=2;ASN_AF=0.69;AVGPOST=0.9644;ERATE=0.0667;EUR_AF=0.75;LDAF=0.6590;RSQ=0.9454;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.64,-0.00 +4 119161795 rs617430 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2536;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 119176703 rs7684275 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.29;AMR_AF=0.48;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4461;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 119219909 rs28661939 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.12;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1115;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 119237348 rs2292597 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.42;AMR_AF=0.56;AN=2;ASN_AF=0.58;AVGPOST=0.9991;ERATE=0.0027;EUR_AF=0.57;LDAF=0.5363;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 119273712 rs13119545 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.20;AMR_AF=0.73;AN=2;ASN_AF=0.45;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.63;LDAF=0.5026;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +4 119609039 rs9968326 G A 100 PASS AA=a;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 119615543 rs13111664 T C 100 PASS AA=N;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.2491;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 119718988 rs11730993 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.06;AMR_AF=0.39;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2847;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 119736598 rs6843524 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.94;AMR_AF=0.90;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8492;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 119736796 rs2389688 A C 100 PASS AA=c;AC=1;AF=0.43;AFR_AF=0.23;AMR_AF=0.55;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.43;LDAF=0.4309;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 119944611 rs1459058 G T 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.50;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4117;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 119947985 rs12645298 G C 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2737;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 119948046 rs17263971 A C 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.18;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=0.9993;ERATE=0.0010;EUR_AF=0.26;LDAF=0.2114;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 119951647 rs7698598 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.80;AMR_AF=0.89;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8520;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 120072233 rs6828875 G C 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.26;AMR_AF=0.64;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5690;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 120072238 rs6828349 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.26;AMR_AF=0.64;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5695;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 120079159 rs11721566 A G 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.26;AMR_AF=0.64;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5720;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 120214030 rs3749591 T G 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2755;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120240238 rs1511025 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.41;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3537;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120241849 rs4834770 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5914;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120241902 rs1799883 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.79;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7477;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 120423719 rs3733523 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.23;AMR_AF=0.25;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2984;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120423729 rs3733524 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.29;LDAF=0.2669;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120425777 rs3775841 A C 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0017;EUR_AF=0.29;LDAF=0.3016;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120474859 rs11947234 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.22;AMR_AF=0.25;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2966;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120481431 rs34308924 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.3012;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120528327 rs3733526 G A 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8103;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120549862 rs187593210 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9983;ERATE=0.0003;LDAF=0.0134;RSQ=0.9443;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 120983259 rs2908989 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.87;AMR_AF=0.80;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.8080;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 121720784 rs200491818 A G 100 PASS AA=A;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 121737767 rs2136998 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.38;AMR_AF=0.39;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.4113;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 121957734 rs1397645 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.64;AMR_AF=0.89;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8501;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 122063084 rs111424774 A G 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.13;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.03;LDAF=0.0448;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0075;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 122068316 rs75386686 T G 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0156;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 122075861 rs75171177 T G 100 PASS AA=t;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 122078415 rs17051299 A C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0219;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 122079827 rs74396543 G C 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 122250734 rs2302310 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2962;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 122254119 rs33977434 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.34;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.2655;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 122257942 rs4558890 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9927;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 122258063 rs4490481 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.16;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.4717;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 122683007 rs4370153 G A 100 PASS AA=A;AC=1;AF=0.87;AFR_AF=0.93;AMR_AF=0.87;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8743;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 122723106 rs67772833 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.83;AMR_AF=0.40;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.36;LDAF=0.4781;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 122742217 rs769242 T C 100 PASS AA=C;AC=1;AF=0.96;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9611;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 122749436 rs2706793 G T 100 PASS AA=T;AC=1;AF=0.81;AFR_AF=0.90;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.8135;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 122749541 rs1507994 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.50;AMR_AF=0.38;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3574;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 122769967 rs6824258 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.09;AMR_AF=0.26;AN=2;ASN_AF=0.17;AVGPOST=0.9975;ERATE=0.0075;EUR_AF=0.29;LDAF=0.2097;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 122782879 rs56159666 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.35;LDAF=0.2541;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 123113352 rs72687029 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1429;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 123140739 rs6534345 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9702;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 123252438 rs148316119 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=0.9984;ERATE=0.0002;LDAF=0.0211;RSQ=0.9792;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 123280860 rs1127348 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1425;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 123377482 rs2069763 C A 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.09;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3446;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 123536963 rs4833837 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.95;AMR_AF=0.79;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.8003;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 123664204 rs309370 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.55;AMR_AF=0.46;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.32;LDAF=0.4788;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 123664445 rs2292493 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.15;AMR_AF=0.29;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.08;LDAF=0.2752;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 123748086 rs1449683 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.27;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=0.9953;ERATE=0.0008;EUR_AF=0.10;LDAF=0.1618;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.18,-0.46,-2.49 +4 123748524 rs41333248 T C 100 PASS AA=t;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0719;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 123838758 rs12648093 A G 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.18;AMR_AF=0.67;AN=2;ASN_AF=0.94;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6544;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 123843716 rs13134412 T C 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.38;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.89;LDAF=0.7726;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-1.31,-0.02,-5.00 +4 123949556 rs1472949 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.95;LDAF=0.8968;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126238924 rs6847454 A T 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.63;AMR_AF=0.41;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4178;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 126239986 rs1039808 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.63;AMR_AF=0.41;AN=2;ASN_AF=0.22;AVGPOST=0.9984;ERATE=0.0010;EUR_AF=0.42;LDAF=0.4141;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 126240510 rs2940779 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.91;AMR_AF=0.74;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6915;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126241335 rs36052762 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0950;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 126241871 rs2710555 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.88;AMR_AF=0.74;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6801;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126329789 rs958415 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126336703 rs17009618 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1760;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 126336990 rs10010000 G T 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9964;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126337555 rs7675556 A G 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9941;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126355609 rs7656135 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9964;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126369872 rs988863 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9964;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0128;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126370647 rs12508222 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0645;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 126372742 rs1567047 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2580;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 126373789 rs12650153 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9963;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126389627 rs6814158 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9967;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 126402921 rs11098815 T G 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.26;AMR_AF=0.45;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.36;LDAF=0.4155;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +4 126412575 rs1014866 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7679;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 128565000 rs3749507 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.67;AMR_AF=0.62;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5777;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 128584580 rs4833380 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.63;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.6042;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 128632023 rs2305956 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.12;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1542;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 128665981 rs769293 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.78;AMR_AF=0.75;AN=2;ASN_AF=0.63;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7031;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 128689936 rs2305958 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.32;AMR_AF=0.63;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.65;LDAF=0.4923;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 128723042 rs1380154 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.80;AMR_AF=0.76;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7115;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 128807219 rs3811740 T A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.79;AMR_AF=0.76;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.69;LDAF=0.7093;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 128814964 rs17012739 G T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.79;AMR_AF=0.76;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7099;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 128842876 rs11098943 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0362;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 129012181 rs2306054 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.57;AMR_AF=0.70;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.68;LDAF=0.5997;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 129012638 rs1064205 A G 100 PASS AA=a;AC=1;AF=0.60;AFR_AF=0.57;AMR_AF=0.70;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.5987;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 129043204 rs12508837 C G 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.40;AMR_AF=0.68;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.5590;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 129043286 rs3733320 C T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.41;AMR_AF=0.68;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.5599;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 129100643 rs12645577 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.35;AMR_AF=0.67;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5438;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 129867280 rs10028124 T A 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.95;AMR_AF=0.75;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7408;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 129924977 rs3113487 C A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.27;AMR_AF=0.61;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.67;LDAF=0.5694;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 130023759 rs1757935 A T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.40;AMR_AF=0.73;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7011;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 130030652 rs337277 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.43;AMR_AF=0.73;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7116;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 134072264 rs13144059 G A 100 PASS AA=G;AC=1;AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 134076153 rs2271171 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0038;EUR_AF=0.02;LDAF=0.0736;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 138449683 rs10018837 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.89;AMR_AF=0.42;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5397;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 138449812 rs10006580 C G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.83;AMR_AF=0.41;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5238;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 139100372 rs4479754 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9319;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 139135799 rs11944083 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2047;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 139140388 rs10025342 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 139140494 rs6838248 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3172;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 140005294 rs4863628 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.5081;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 140625323 rs925424 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9962;RSQ=0.9689;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 141446767 rs3828535 G T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.47;AMR_AF=0.37;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3739;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 141543997 rs1560440 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.62;AVGPOST=0.9963;ERATE=0.0016;EUR_AF=0.80;LDAF=0.7828;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.59,-0.00 +4 141555062 rs6851737 G T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.78;AMR_AF=0.73;AN=2;ASN_AF=0.61;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6859;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 141600320 rs4956329 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.68;AMR_AF=0.62;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6463;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 141847110 rs13120735 T C 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.57;AMR_AF=0.64;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6718;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 142640637 rs2857261 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.46;AMR_AF=0.45;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4626;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 142651159 rs12510030 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.56;AMR_AF=0.44;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4863;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 143007419 rs336324 A G 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.33;AMR_AF=0.75;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6294;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.50 +4 143029391 rs17383664 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0942;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 143033778 rs3822141 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0622;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 143043404 rs13133767 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0928;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 143130034 rs1907123 A T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.78;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9200;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 143130219 rs1994217 T A 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.07;AMR_AF=0.68;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5681;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 143324094 rs1982966 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2537;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 144135718 rs4285045 G A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.86;AMR_AF=0.69;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7660;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 144361324 rs142207353 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 144442735 rs11541117 C T 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.53;AMR_AF=0.41;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5211;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 144447630 rs7694156 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4768;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 144456124 rs6818251 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9776;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 144466050 rs7692376 A G 100 PASS AA=a;AC=1;AF=0.48;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4776;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 144467104 rs13139128 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9953;RSQ=0.9726;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 144801671 rs146400730 A C 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=0.9347;ERATE=0.0588;EUR_AF=0.32;LDAF=0.2790;RSQ=0.8359;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +4 145037980 rs6824244 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8457;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 145040962 rs6857144 C G 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.55;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=0.9799;ERATE=0.0009;EUR_AF=0.83;LDAF=0.7734;RSQ=0.9700;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.35,-0.26,-5.00 +4 145040963 rs6833563 A T 100 PASS AA=a;AC=1;AF=0.76;AFR_AF=0.54;AMR_AF=0.80;AN=2;ASN_AF=0.85;AVGPOST=0.9827;ERATE=0.0065;EUR_AF=0.82;LDAF=0.7623;RSQ=0.9746;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-0.29,-0.31,-5.00 +4 145041686 rs4867 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.54;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=0.9462;ERATE=0.0055;EUR_AF=0.90;LDAF=0.8049;RSQ=0.9064;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-1.35,-0.02,-5.00 +4 145579907 rs6537301 G A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.75;AMR_AF=0.60;AN=2;ASN_AF=0.45;AVGPOST=0.9957;ERATE=0.0072;EUR_AF=0.48;LDAF=0.5515;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 145640154 rs2276933 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1251;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 146046138 rs4835203 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9968;ERATE=0.0028;EUR_AF=1.00;LDAF=0.9840;RSQ=0.9226;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 147215092 rs76346232 T C 100 PASS AA=t;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0187;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 147425114 rs7439061 A T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8733;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +4 147560460 rs189899086 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.05;AVGPOST=0.9580;ERATE=0.0040;EUR_AF=0.01;LDAF=0.0324;RSQ=0.4861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.550:-0.48,-0.48,-0.48 +4 147724590 rs12506936 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0644;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 147754939 rs12506386 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0658;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 147788709 rs10013280 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.38;AMR_AF=0.35;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3469;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.75 +4 147788728 rs35231662 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0626;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 147824864 rs17610219 G A 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.64;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4911;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 148441139 rs4835412 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1239;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 148461037 rs5333 T C 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.61;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3250;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 148461073 rs5334 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.61;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3250;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 148589677 rs2718454 C T 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.52;AMR_AF=0.95;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8327;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 148591769 rs2036502 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9815;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 148827747 rs12509618 A C 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.13;AMR_AF=0.76;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.6394;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 149035449 rs1879829 T C 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.40;AMR_AF=0.41;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.46;LDAF=0.5016;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 149116035 rs4835500 A G 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.56;AMR_AF=0.57;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5914;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 149356516 rs5525 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.92;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8830;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 149357475 rs5522 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.92;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 149358014 rs2070951 G C 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.17;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 151000419 rs56382032 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0557;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.85,-0.00,-5.00 +4 151161502 rs6813035 G T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.85;AMR_AF=0.96;AN=2;ASN_AF=0.91;AVGPOST=0.9992;ERATE=0.0066;EUR_AF=0.95;LDAF=0.9183;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 151177340 rs13152819 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.74;AVGPOST=0.9717;ERATE=0.0007;EUR_AF=0.95;LDAF=0.8477;RSQ=0.9240;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.600:-3.62,-0.51,-0.16 +4 151177341 rs60939896 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.80;AMR_AF=0.91;AN=2;ASN_AF=0.74;AVGPOST=0.9691;ERATE=0.0007;EUR_AF=0.94;LDAF=0.8511;RSQ=0.9193;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:1.600:-3.66,-0.51,-0.16 +4 151177432 rs13101258 A C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.80;AMR_AF=0.89;AN=2;ASN_AF=0.72;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.95;LDAF=0.8470;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-4.10 +4 151765243 rs186080 G A 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.55;AMR_AF=0.85;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8126;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 151829659 rs1201207 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9744;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 152022348 rs145965647 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0005;LDAF=0.0151;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 152069090 rs78397848 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0354;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 152070633 rs3792611 T A 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.22;AMR_AF=0.84;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0011;EUR_AF=0.88;LDAF=0.6865;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 152201053 rs36097019 G A 100 PASS AA=g;AC=1;AF=0.35;AFR_AF=0.14;AMR_AF=0.46;AN=2;ASN_AF=0.33;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3508;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 152212486 rs13126069 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.14;AMR_AF=0.46;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3497;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 152212603 rs2407221 T G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.69;AMR_AF=0.92;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8337;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 152609784 rs75029272 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0005;LDAF=0.0197;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 152681952 rs1429559 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.59;AMR_AF=0.31;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4058;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 153252061 rs10033601 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.72;AMR_AF=0.41;AN=2;ASN_AF=0.45;AVGPOST=0.9992;ERATE=0.0009;EUR_AF=0.29;LDAF=0.4508;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 153565641 rs12650966 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.18;AMR_AF=0.54;AN=2;ASN_AF=0.47;AVGPOST=0.9968;ERATE=0.0228;EUR_AF=0.45;LDAF=0.4111;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0247;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +4 153690842 rs4696354 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.69;AMR_AF=0.73;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6741;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 153750918 rs10010297 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.69;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6650;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 153881835 rs3811834 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.09;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9980;ERATE=0.0063;EUR_AF=0.35;LDAF=0.3485;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0165;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 154478222 rs10001845 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.54;AMR_AF=0.38;AN=2;ASN_AF=0.56;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.20;LDAF=0.4016;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 154479430 rs6848033 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.85;AMR_AF=0.59;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5691;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 154523683 rs140033515 T G 100 PASS AA=t;AC=1;AF=0.03;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0311;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 154525138 rs36023829 A G 100 PASS AA=A;AC=1;AF=0.03;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 154525458 rs1063151 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.33;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.11;LDAF=0.1588;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 154542814 rs7663417 G T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.53;AMR_AF=0.56;AN=2;ASN_AF=0.42;AVGPOST=0.9917;ERATE=0.0096;EUR_AF=0.60;LDAF=0.5291;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 154544267 rs2289319 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.66;AMR_AF=0.60;AN=2;ASN_AF=0.47;AVGPOST=0.9897;ERATE=0.0127;EUR_AF=0.47;LDAF=0.5333;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 154626180 rs5743705 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0234;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 154626402 rs5743709 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0151;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 154631543 rs2405432 A T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.89;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=0.9717;ERATE=0.0191;EUR_AF=0.96;LDAF=0.9450;RSQ=0.7981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 154644454 rs1456384 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9830;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 154709480 rs3810765 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.62;AMR_AF=0.59;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5210;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 154709856 rs6535952 A C 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155156207 rs7655799 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.25;AMR_AF=0.73;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.6924;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155157015 rs61743677 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0814;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 155161666 rs6535989 C T 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.20;AMR_AF=0.72;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.6810;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155226421 rs12507663 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2743;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155241572 rs11935573 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2742;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155242383 rs62331873 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2742;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155243573 rs13109747 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.42;AMR_AF=0.92;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7916;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155243604 rs1352714 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.65;AMR_AF=0.98;AN=2;ASN_AF=0.87;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8765;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155249362 rs12651681 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0914;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 155256177 rs6858157 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.34;AMR_AF=0.33;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3468;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155256205 rs6858712 G A 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155305491 rs34927139 C T 100 PASS AA=c;AC=2;AF=0.40;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3972;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155488821 rs6056 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1728;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155490832 rs4681 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155491759 rs4220 G A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1727;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 155507590 rs6050 T C 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.37;AMR_AF=0.22;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3295;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155508627 rs2070018 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.92;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8981;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155525970 rs1049636 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.84;AMR_AF=0.55;AN=2;ASN_AF=0.82;AVGPOST=0.9988;ERATE=0.0016;EUR_AF=0.67;LDAF=0.7264;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155530958 rs141651129 G A 100 PASS AA=G;AC=2;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0080;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 155720274 rs156502 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.90;AMR_AF=0.61;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.6577;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 156273742 rs199795369 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=0.9882;ERATE=0.0793;EUR_AF=0.10;LDAF=0.1182;RSQ=0.9538;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.79,-0.00,-5.00 +4 156617994 rs2306557 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.11;AMR_AF=0.26;AN=2;ASN_AF=0.21;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2218;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 156632391 rs11944673 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 156643176 rs2306555 T A 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.51;AMR_AF=0.35;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3958;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 156643183 rs2306554 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.31;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3341;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 156680340 rs1459845 G T 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.70;AVGPOST=0.9904;ERATE=0.0006;EUR_AF=0.45;LDAF=0.4676;RSQ=0.9873;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +4 156717580 rs199558345 A T 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.7933;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +4 156750959 rs34057823 T G 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0722;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 156757818 rs1399046 A C 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.32;AMR_AF=0.79;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7349;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 156787340 rs6848883 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.58;AMR_AF=0.93;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8642;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 156830023 rs72681567 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0759;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 156847230 rs1543108 A G 100 PASS AA=a;AC=2;AF=0.77;AFR_AF=0.33;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7711;RSQ=0.9990;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +4 156874833 rs2292538 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=0.9925;ERATE=0.0008;EUR_AF=0.34;LDAF=0.3514;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.35 +4 158065038 rs12507409 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9795;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 158238830 rs4302506 T C 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.49;AMR_AF=0.74;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6695;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +4 158242540 rs4475186 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.50;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=0.9961;ERATE=0.0033;EUR_AF=0.64;LDAF=0.6728;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 159076826 rs6830702 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.48;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7879;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 159568383 rs13111939 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.59;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9016;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 159601676 rs11559290 C T 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.18;AMR_AF=0.78;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7227;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 159631991 rs9410 G T 100 PASS AA=t;AC=1;AF=0.25;AFR_AF=0.38;AMR_AF=0.15;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2464;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 159780244 rs2276938 C G 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.16;AMR_AF=0.05;AN=2;ASN_AF=0.05;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0763;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 159881479 rs9784569 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2231;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 159894199 rs1820511 T A 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.26;AMR_AF=0.32;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3253;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.22 +4 159894250 rs619128 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9854;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 159894277 rs17037858 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.04;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1002;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 159894305 rs662473 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9866;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 160277276 rs1135004 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.24;AMR_AF=0.57;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.3719;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 162307312 rs3749598 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0937;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 162459299 rs4691769 T C 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9872;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 162577430 rs17638339 A G 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2034;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.18,-0.00 +4 164085425 rs4691896 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.81;AMR_AF=0.80;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7897;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 164247743 rs5577 A C 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0205;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 164272703 rs11946004 G A 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.10;AMR_AF=0.09;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0896;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 164393253 rs202081893 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 164435265 rs2304802 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.25;AMR_AF=0.60;AN=2;ASN_AF=0.34;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4124;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 164440581 rs1561736 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.25;AMR_AF=0.60;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4122;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 164466824 rs13130399 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.25;AMR_AF=0.59;AN=2;ASN_AF=0.34;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4051;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 166231868 rs28678193 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.41;AMR_AF=0.32;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0024;EUR_AF=0.43;LDAF=0.3617;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 166910665 rs80130536 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.0035;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0221;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 166929102 rs17590218 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.04;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0585;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 167012249 rs114418594 T A 100 PASS AA=a;AC=2;AF=0.57;AFR_AF=0.52;AMR_AF=0.66;AN=2;ASN_AF=0.49;AVGPOST=0.9644;ERATE=0.0359;EUR_AF=0.63;LDAF=0.5750;RSQ=0.9505;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +4 167012250 rs58224478 T A 100 PASS AA=a;AC=2;AF=0.87;AFR_AF=0.76;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=0.9611;ERATE=0.0398;EUR_AF=0.87;LDAF=0.8650;RSQ=0.8837;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +4 167012381 rs2654492 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.79;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9364;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 167012480 rs2646914 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9781;RSQ=0.9636;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 167012506 rs2254420 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.79;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9365;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 167012543 rs2654493 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.79;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9365;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 167020644 rs2291822 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.06;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1746;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 167656278 rs12499704 A C 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3364;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 167675635 rs2305593 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.30;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3526;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169098984 rs10024092 G T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.32;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169108472 rs3828561 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.21;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9989;ERATE=0.0009;EUR_AF=0.0026;LDAF=0.0965;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169108500 rs3792714 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0489;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169138229 rs80220511 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0512;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169145579 rs2271712 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0512;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169157542 rs1454847 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0512;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169158471 rs6552559 T G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.40;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.1741;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169158489 rs3828560 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0804;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169158531 rs3805396 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0804;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169176996 rs61732255 G A 100 PASS AA=g;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0040;LDAF=0.0695;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169177041 rs17053879 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.21;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0040;LDAF=0.0996;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169183789 rs6552581 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.98;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6218;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169195109 rs76527646 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0439;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169197297 rs550625 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.26;AMR_AF=0.14;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1426;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169282355 rs2684348 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.38;AMR_AF=0.61;AN=2;ASN_AF=0.75;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6045;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169299528 rs13110927 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.18;AMR_AF=0.53;AN=2;ASN_AF=0.65;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.51;LDAF=0.4761;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169299676 rs10517990 T G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.69;AMR_AF=0.82;AN=2;ASN_AF=0.87;AVGPOST=0.9928;ERATE=0.0036;EUR_AF=0.77;LDAF=0.7859;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 169315760 rs3749499 C A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.70;AMR_AF=0.99;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9013;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 169317081 rs1826028 C A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.46;AMR_AF=0.61;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5617;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169317279 rs3857035 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5359;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-0.61,-0.12,-5.00 +4 169325124 rs62334117 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1181;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169327191 rs3762856 C T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.21;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3306;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169327905 rs62334119 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1175;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169336662 rs4692661 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 169340431 rs2018241 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1138;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169341435 rs2130145 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9857;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 169348435 rs2712120 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.53;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1922;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169362557 rs13151700 C G 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.05;AMR_AF=0.47;AN=2;ASN_AF=0.64;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3735;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169369820 rs2712113 T A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.76;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8236;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169369853 rs2712114 A T 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.49;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7568;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169369920 rs12507582 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.03;AMR_AF=0.47;AN=2;ASN_AF=0.65;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.34;LDAF=0.3692;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169393595 rs13149639 A G 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.49;AMR_AF=0.77;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7518;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.42 +4 169432673 rs61051061 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.16;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2020;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169432841 rs1806729 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.24;AMR_AF=0.21;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2541;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169433326 rs115740056 T C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=0.9935;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2060;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169433327 rs7671781 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=0.9934;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2059;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169433333 rs7673220 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2575;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 169606649 rs62333891 C A 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 169835048 rs1532651 C G 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.38;AMR_AF=0.66;AN=2;ASN_AF=0.92;AVGPOST=0.9709;ERATE=0.0221;EUR_AF=0.75;LDAF=0.6930;RSQ=0.9586;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 169846255 rs3733656 T C 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.43;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7331;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 169928842 rs2877380 G T 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.42;AMR_AF=0.69;AN=2;ASN_AF=0.96;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7427;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 169931268 rs28371817 G A 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.68;AMR_AF=0.77;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8415;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 169931274 rs2279038 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.16;AMR_AF=0.62;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5966;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 169931288 rs2279039 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.59;AMR_AF=0.70;AN=2;ASN_AF=0.96;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7819;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +4 170017860 rs1471172 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.23;AMR_AF=0.61;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5376;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 170354836 rs7680152 C T 100 PASS AA=c;AC=2;AF=0.81;AFR_AF=0.58;AMR_AF=0.87;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8067;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 170482883 rs56064008 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.08;LDAF=0.0390;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.80 +4 170506703 rs55679731 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.07;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0467;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 170601172 rs33965812 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1161;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 170663235 rs1047642 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.66;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8157;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 170678993 rs11540095 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.70;AMR_AF=0.80;AN=2;ASN_AF=0.89;AVGPOST=0.9682;ERATE=0.0010;EUR_AF=0.80;LDAF=0.8007;RSQ=0.9267;SNPSOURCE=LOWCOV,EXOME;THETA=0.0097;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +4 170987636 rs1480544 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.89;AMR_AF=0.52;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6956;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 172735897 rs3796654 C G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.34;AMR_AF=0.90;AN=2;ASN_AF=0.81;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.92;LDAF=0.7552;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 173232944 rs168011 G T 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.22;AMR_AF=0.63;AN=2;ASN_AF=0.71;AVGPOST=0.9887;ERATE=0.0338;EUR_AF=0.55;LDAF=0.5307;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 173269638 rs333399 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.64;AMR_AF=0.30;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.32;LDAF=0.4410;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 173930479 rs4696042 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 175429808 rs3775977 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.28;AMR_AF=0.32;AN=2;ASN_AF=0.67;AVGPOST=0.9897;ERATE=0.0166;EUR_AF=0.28;LDAF=0.3920;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0267;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 175443156 rs1050145 C T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3793;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 175443261 rs45567139 G T 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0265;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 175565245 rs4235212 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.47;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3263;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 175580191 rs4365704 G A 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.08;AMR_AF=0.46;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 175598280 rs12648678 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2326;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 175598334 rs6812439 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9817;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 175649861 rs1872548 T G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.61;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5187;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 175688138 rs7696263 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.73;AMR_AF=0.75;AN=2;ASN_AF=0.98;AVGPOST=0.9970;ERATE=0.0057;EUR_AF=0.74;LDAF=0.7999;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 175688141 rs12651268 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.13;AMR_AF=0.37;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3487;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 175899137 rs150490039 T C 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9414;ERATE=0.0352;EUR_AF=0.04;LDAF=0.0682;RSQ=0.6375;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-3.22,-0.00,-5.00 +4 177073026 rs4690661 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9790;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177087322 rs4388031 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9570;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177093505 rs4538426 T G 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.39;AMR_AF=0.61;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4762;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177095908 rs4690665 A G 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.32;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2952;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177098285 rs17625943 G A 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.28;AMR_AF=0.38;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2861;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177113764 rs6857056 A C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.60;AMR_AF=0.66;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7178;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177113836 rs6832177 C T 100 PASS AA=c;AC=2;AF=0.31;AFR_AF=0.23;AMR_AF=0.36;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0015;EUR_AF=0.36;LDAF=0.3097;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177116463 rs994252 C G 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.39;AMR_AF=0.54;AN=2;ASN_AF=0.80;AVGPOST=0.9887;ERATE=0.0137;EUR_AF=0.56;LDAF=0.5797;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0092;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177137988 rs6827525 C T 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.55;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5238;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 177142776 rs10032098 C A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.83;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9915;ERATE=0.0129;EUR_AF=0.87;LDAF=0.8421;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 178272748 rs1054753 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.37;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.47;LDAF=0.2703;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 178274565 rs113130668 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.64;AMR_AF=0.70;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6284;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 178274694 rs10007075 T G 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.40;AMR_AF=0.69;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5690;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 178274750 rs13112358 C T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.64;AMR_AF=0.70;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6280;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 178274835 rs13112390 A C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.70;AMR_AF=0.74;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6728;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 178281754 rs1876268 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9602;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 178355668 rs4690521 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0020;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0200;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 178359960 rs2228119 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9346;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 178361414 rs34241758 A C 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1741;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 178361621 rs3792607 T A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.56;AMR_AF=0.54;AN=2;ASN_AF=0.37;AVGPOST=0.9974;ERATE=0.0040;EUR_AF=0.55;LDAF=0.5023;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 178363378 rs11131799 G A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.45;AMR_AF=0.63;AN=2;ASN_AF=0.58;AVGPOST=0.9903;ERATE=0.0006;EUR_AF=0.64;LDAF=0.5791;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +4 183594117 rs3749508 A T 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.31;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9611;ERATE=0.0167;EUR_AF=0.26;LDAF=0.3638;RSQ=0.9376;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +4 183601666 rs79195097 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0992;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 183601847 rs2871328 T C 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.36;AMR_AF=0.48;AN=2;ASN_AF=0.75;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4841;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 183652175 rs10866256 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 184170025 rs907357 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +4 184192183 rs28647357 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2744;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 184192278 rs11734376 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.14;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0718;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 184201909 rs11132173 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.31;AMR_AF=0.46;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3501;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 184203886 rs3814422 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.20;AMR_AF=0.36;AN=2;ASN_AF=0.23;AVGPOST=0.9925;ERATE=0.0165;EUR_AF=0.24;LDAF=0.2484;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 184204099 rs3814421 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3501;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 184426387 rs8872 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.68;AMR_AF=0.71;AN=2;ASN_AF=0.62;AVGPOST=0.9703;ERATE=0.0037;EUR_AF=0.80;LDAF=0.7055;RSQ=0.9451;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.95,-0.05 +4 184426526 rs6552675 A G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.79;AVGPOST=0.9942;ERATE=0.0005;EUR_AF=0.95;LDAF=0.8812;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +4 184570715 rs10015804 T G 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.24;AMR_AF=0.24;AN=2;ASN_AF=0.14;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2168;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 184600601 rs4241779 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.59;AMR_AF=0.45;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4799;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 184619017 rs12651215 C G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.65;AMR_AF=0.47;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5388;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 184931818 rs4861597 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.30;LDAF=0.4184;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 184932609 rs4862282 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 185012398 rs4479748 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.69;AMR_AF=0.46;AN=2;ASN_AF=0.59;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.45;LDAF=0.5426;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 185138760 rs4861612 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0078;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 185310218 rs3775543 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.37;AMR_AF=0.53;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3983;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 185339894 rs4861623 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 185553098 rs2705897 T G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.85;AMR_AF=0.57;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5969;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 185587165 rs2463447 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9739;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 185622046 rs11728389 C T 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 185652147 rs3806796 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.4758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 185681475 rs6825554 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 185686032 rs2292898 C T 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.8103;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 185687863 rs11727009 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0016;EUR_AF=0.25;LDAF=0.2294;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 185701549 rs1803898 G T 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.35;LDAF=0.1858;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 185701620 rs7680850 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.36;LDAF=0.1884;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 186097045 rs6855305 C T 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.63;AMR_AF=0.51;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4982;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186272773 rs3822302 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.79;AMR_AF=0.38;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0038;EUR_AF=0.33;LDAF=0.4398;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 186288388 rs138661740 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 186294198 rs3797026 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0017;EUR_AF=0.19;LDAF=0.2331;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 186299260 rs2030802 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.70;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9938;ERATE=0.0280;EUR_AF=0.27;LDAF=0.3905;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 186329220 rs6854344 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.28;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0951;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 186339584 rs10003160 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186339620 rs61735474 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0207;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 186347055 rs2289720 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.23;AMR_AF=0.72;AN=2;ASN_AF=0.86;AVGPOST=0.9951;ERATE=0.0006;EUR_AF=0.73;LDAF=0.6478;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +4 186379371 rs7687202 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186379899 rs35596415 G C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3921;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186380243 rs59319722 A C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3926;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186380295 rs36007437 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.36;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3195;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 186380515 rs11132306 G A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3922;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186380846 rs7698680 A T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.31;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3931;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186381115 rs7699687 G T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.31;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3931;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186381165 rs7699724 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.31;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3931;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186382206 rs11132309 A G 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3917;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186423637 rs4635850 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.30;AMR_AF=0.76;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6890;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186423655 rs12644280 G A 100 PASS AA=g;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.16;LDAF=0.1524;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 186423677 rs10866276 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.30;AMR_AF=0.76;AN=2;ASN_AF=0.79;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6890;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 186427841 rs2306705 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.65;AMR_AF=0.80;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0016;EUR_AF=0.83;LDAF=0.7744;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +4 186456617 rs4862545 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9916;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9463;RSQ=0.9452;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-0.88,-0.39,-0.34 +4 186541301 rs61753946 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0444;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 186544153 rs150703988 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0068;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 186544879 rs61910743 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.04;AN=2;AVGPOST=0.9984;ERATE=0.0015;EUR_AF=0.09;LDAF=0.0524;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0075;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 186570855 rs7663827 C A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.42;AMR_AF=0.39;AN=2;ASN_AF=0.25;AVGPOST=0.9989;ERATE=0.0016;EUR_AF=0.46;LDAF=0.3843;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187074833 rs4862650 A G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.93;AMR_AF=0.85;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8751;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187077206 rs4862653 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.90;LDAF=0.8825;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-5.00,0.00 +4 187077393 rs7670550 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.55;AMR_AF=0.63;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6568;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187078785 rs2276924 A G 100 PASS AA=a;AC=1;AF=0.89;AFR_AF=0.96;AMR_AF=0.86;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0020;EUR_AF=0.90;LDAF=0.8858;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187078866 rs2276922 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.47;AMR_AF=0.24;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2575;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187093018 rs4241814 G T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.49;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.61;LDAF=0.4352;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187113041 rs1055138 C G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.43;AMR_AF=0.47;AN=2;ASN_AF=0.30;AVGPOST=0.9794;ERATE=0.0018;EUR_AF=0.54;LDAF=0.4372;RSQ=0.9689;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-2.02,-0.00,-3.74 +4 187120211 rs13146272 C A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.60;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5452;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187122319 rs3736455 T G 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.59;AMR_AF=0.53;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5507;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187129995 rs2276917 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.24;AMR_AF=0.43;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3477;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187171355 rs4253299 A G 100 PASS AA=g;AC=1;AF=0.86;AFR_AF=0.87;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8633;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187173012 rs4253301 T G 100 PASS AA=t;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0937;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187201211 rs5974 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.23;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1450;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187205301 rs5970 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.23;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1467;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 187516880 rs1298865 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.66;AMR_AF=0.53;AN=2;ASN_AF=0.62;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.38;LDAF=0.5313;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187518976 rs2306990 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.58;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3782;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187518980 rs1280096 T C 100 PASS AA=t;AC=1;AF=0.88;AFR_AF=0.99;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9953;ERATE=0.0004;EUR_AF=0.76;LDAF=0.8802;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187519206 rs1280097 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0013;EUR_AF=1.00;LDAF=0.9976;RSQ=0.7908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 187521037 rs10009030 C A 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3249;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187525020 rs2637777 A C 100 PASS AA=c;AC=1;AF=0.55;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.62;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.38;LDAF=0.5539;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187530313 rs4862722 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 187534363 rs2249916 G A 100 PASS AA=g;AC=1;AF=0.65;AFR_AF=0.71;AMR_AF=0.66;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6536;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187534375 rs2249917 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4338;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187534542 rs2249926 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.81;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9503;ERATE=0.0093;EUR_AF=0.52;LDAF=0.5845;RSQ=0.9368;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187538133 rs1280100 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.84;AMR_AF=0.67;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0014;EUR_AF=0.57;LDAF=0.6836;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187538330 rs1280099 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.51;AMR_AF=0.47;AN=2;ASN_AF=0.31;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4312;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187538942 rs1280098 T G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.70;AVGPOST=0.9869;ERATE=0.0061;EUR_AF=0.55;LDAF=0.6591;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 187584771 rs172903 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9802;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 187627792 rs11939575 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.89;AMR_AF=0.77;AN=2;ASN_AF=0.50;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7260;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 187628398 rs1877731 C G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.70;AMR_AF=0.74;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6793;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 187629140 rs367863 G C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.70;AMR_AF=0.74;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.77;LDAF=0.6777;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 187629497 rs458021 G A 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.31;AMR_AF=0.59;AN=2;ASN_AF=0.22;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.65;LDAF=0.4519;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 187629538 rs3733413 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.19;AMR_AF=0.53;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.57;LDAF=0.3632;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 187629770 rs3733414 A C 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.24;AMR_AF=0.59;AN=2;ASN_AF=0.22;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4349;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 189012861 rs147971195 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0078;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +4 189061106 rs13131525 G A 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.11;AMR_AF=0.49;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.47;LDAF=0.2921;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 189064952 rs28463290 C G 100 PASS AA=c;AC=2;AF=0.44;AFR_AF=0.27;AMR_AF=0.55;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0018;EUR_AF=0.55;LDAF=0.4392;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +4 190862155 rs4145515 T G 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.27;AMR_AF=0.27;AN=2;ASN_AF=0.27;AVGPOST=0.9947;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2918;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-2.16,-0.00,-2.98 +4 190862182 rs2411530 C T 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.79;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.9897;ERATE=0.0039;EUR_AF=0.37;LDAF=0.4820;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0083;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.43,-0.20 +4 190876195 rs7684300 C T 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.32;AMR_AF=0.29;AN=2;ASN_AF=0.25;AVGPOST=0.9838;ERATE=0.0110;EUR_AF=0.31;LDAF=0.2953;RSQ=0.9644;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 190878512 rs12511235 A G 100 PASS AA=.;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9919;ERATE=0.0005;EUR_AF=0.09;LDAF=0.0488;RSQ=0.9330;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-3.25,-0.00,-5.00 +4 190878661 rs62345291 A T 100 PASS AA=.;AC=1;AF=0.49;AFR_AF=0.49;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9830;ERATE=0.0371;EUR_AF=0.49;LDAF=0.4921;RSQ=0.4817;SNPSOURCE=EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +4 190947629 rs199615825 T A 100 PASS AA=.;AC=2;AF=0.41;AFR_AF=0.32;AMR_AF=0.40;AN=2;ASN_AF=0.60;AVGPOST=0.6741;ERATE=0.0099;EUR_AF=0.33;LDAF=0.4672;RSQ=0.4850;SNPSOURCE=EXOME;THETA=0.0266;VT=SNP GT:DS:GL 1|1:1.600:-2.99,-0.47,-0.18 +3 361493 rs142251617 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0132;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 386247 rs3736632 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.39;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2842;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 391100 rs13060847 A G 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.48;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.8747;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 403345 rs9846775 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 439963 rs6442827 A G 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9607;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 440028 rs6771714 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9707;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 440088 rs6771803 T A 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9712;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 1262474 rs2013828 T C 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4326;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 1424718 rs2291101 G A 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.44;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4871;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 3076401 rs6790908 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.50;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.55;LDAF=0.4533;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 3076443 rs6803232 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.66;AMR_AF=0.56;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5808;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 3078840 rs9820464 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.37;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1421;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 3081825 rs339285 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9223;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 3081959 rs339284 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.28;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1138;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 3082003 rs339283 T A 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1870;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 3084147 rs163560 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.46;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2332;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 3084653 rs6800354 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0015;EUR_AF=0.24;LDAF=0.2221;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 3116438 rs2290611 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1161;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 3170792 rs334773 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9214;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 3170910 rs334772 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.65;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9173;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 3189279 rs1705805 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.44;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7613;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 3189398 rs1669348 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4254;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 3197871 rs1705789 T C 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9223;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 3197918 rs17027638 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2294;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 3215954 rs1669321 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.58;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 3886580 rs4685689 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9859;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 3887093 rs9844909 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2421;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 3887876 rs2120609 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.57;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.75;LDAF=0.5174;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 4403817 rs2633851 T A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.77;AMR_AF=0.62;AN=2;ASN_AF=0.70;AVGPOST=0.9801;ERATE=0.0096;EUR_AF=0.51;LDAF=0.6352;RSQ=0.9721;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 4403818 rs35083095 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.21;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9848;ERATE=0.0067;EUR_AF=0.46;LDAF=0.4231;RSQ=0.9790;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 4403837 rs2633852 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.90;AMR_AF=0.69;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7154;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 4417989 rs17040575 A C 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0188;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 4461698 rs711666 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.64;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9100;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +3 5241309 rs410509 C A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9410;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 6903297 rs3749380 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.35;AVGPOST=0.9904;ERATE=0.0019;EUR_AF=0.39;LDAF=0.3794;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0189;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 6903601 rs342034 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0006;EUR_AF=0.94;LDAF=0.9745;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 7456675 rs712774 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.83;AMR_AF=0.61;AN=2;ASN_AF=0.57;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6852;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 7620168 rs34373930 A G 100 PASS AA=A;AC=2;AF=0.20;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 7620382 rs7614915 C T 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.05;AMR_AF=0.27;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.30;LDAF=0.1969;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 7620789 rs1485175 T C 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.56;AMR_AF=0.57;AN=2;ASN_AF=0.45;AVGPOST=0.9953;ERATE=0.0113;EUR_AF=0.60;LDAF=0.5455;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 7620828 rs1485174 G A 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1983;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 7621093 rs1485173 T A 100 PASS AA=t;AC=2;AF=0.20;AFR_AF=0.05;AMR_AF=0.27;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1975;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.12,-0.00 +3 8667896 rs355058 T C 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.64;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8188;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 8669361 rs1533001 C A 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.43;AMR_AF=0.33;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4747;RSQ=0.9993;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 8675318 rs2276801 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.22;AVGPOST=0.9275;ERATE=0.0273;EUR_AF=0.25;LDAF=0.2323;RSQ=0.8439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|0:1.000:-2.34,-0.00,-5.00 +3 8775661 rs1008642 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.57;AMR_AF=0.32;AN=2;ASN_AF=0.36;AVGPOST=0.9974;ERATE=0.0159;EUR_AF=0.27;LDAF=0.3685;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0088;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 8809703 rs2228485 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.64;AMR_AF=0.57;AN=2;ASN_AF=0.71;AVGPOST=0.9514;ERATE=0.0217;EUR_AF=0.73;LDAF=0.6694;RSQ=0.9176;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +3 8955389 rs373572 C T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.67;AMR_AF=0.67;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6325;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9005078 rs615967 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.32;AMR_AF=0.70;AN=2;ASN_AF=0.44;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.80;LDAF=0.5807;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.63,-0.12 +3 9034558 rs511815 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.96;AMR_AF=0.60;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0019;EUR_AF=0.55;LDAF=0.6079;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 9036010 rs637172 T G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.67;AMR_AF=0.58;AN=2;ASN_AF=0.41;AVGPOST=0.9993;ERATE=0.0025;EUR_AF=0.55;LDAF=0.5451;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 9068577 rs1703128 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.33;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2304;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 9069747 rs416685 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7952;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9406836 rs1054975 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.54;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5736;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9407022 rs2648536 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.59;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5868;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9422210 rs2596916 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.54;AMR_AF=0.58;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5740;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9425911 rs1129170 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.57;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.58;LDAF=0.5646;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9495385 rs2648580 A G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.49;AMR_AF=0.69;AN=2;ASN_AF=0.53;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.77;LDAF=0.6314;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9754334 rs187310 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.18;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1069;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 9783147 rs696513 A G 100 PASS AA=A;AC=2;AF=0.22;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2208;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9803126 rs17252807 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.18;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.60;LDAF=0.3511;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9822275 rs3868897 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.52;AMR_AF=0.67;AN=2;ASN_AF=0.69;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.76;LDAF=0.6726;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +3 9841989 rs6443266 A G 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.49;AMR_AF=0.67;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6723;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9934605 rs279553 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.67;AMR_AF=0.64;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6851;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9952706 rs279572 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.65;AMR_AF=0.47;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0017;EUR_AF=0.55;LDAF=0.4336;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9952788 rs279571 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.67;AMR_AF=0.49;AN=2;ASN_AF=0.07;AVGPOST=0.9992;ERATE=0.0033;EUR_AF=0.55;LDAF=0.4395;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9956279 rs455863 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.39;AMR_AF=0.46;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3707;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9956894 rs693802 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.41;AMR_AF=0.46;AN=2;ASN_AF=0.07;AVGPOST=0.9890;ERATE=0.0024;EUR_AF=0.54;LDAF=0.3747;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-0.89,-0.39,-0.33 +3 9957455 rs1056286 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.38;AMR_AF=0.44;AN=2;ASN_AF=0.07;AVGPOST=0.9851;ERATE=0.0046;EUR_AF=0.49;LDAF=0.3441;RSQ=0.9760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9960070 rs708567 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.49;AMR_AF=0.47;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3923;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9962157 rs783494 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.54;AMR_AF=0.46;AN=2;ASN_AF=0.07;AVGPOST=0.9990;ERATE=0.0050;EUR_AF=0.58;LDAF=0.4179;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9969801 rs76234423 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.22;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.06;LDAF=0.0971;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9969911 rs11917994 C T 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.35;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9984;ERATE=0.0023;EUR_AF=0.01;LDAF=0.1006;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0150;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9970031 rs279549 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9976;RSQ=0.9071;SNPSOURCE=LOWCOV,EXOME;THETA=0.0169;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9975247 rs183956 C G 100 PASS AA=-;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9859;RSQ=0.9359;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.57,-0.01 +3 9976159 rs279552 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 9979660 rs2302786 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.88;AMR_AF=0.35;AN=2;ASN_AF=0.21;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3867;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9985656 rs3774207 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.81;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3673;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9990800 rs59465469 G C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.81;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3674;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9991101 rs55847233 C G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.81;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3688;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9991163 rs55847610 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.81;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3687;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 9991388 rs279601 G C 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.96;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9765;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 10015437 rs3732967 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.43;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=0.9985;ERATE=0.0040;EUR_AF=0.16;LDAF=0.2432;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10088343 rs73126218 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.46;AMR_AF=0.44;AN=2;ASN_AF=0.40;AVGPOST=0.9948;ERATE=0.0983;EUR_AF=0.44;LDAF=0.4357;RSQ=0.9670;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10142949 rs3172417 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2353;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10219508 rs2306696 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.32;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1744;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10219729 rs1681663 A G 100 PASS AA=g;AC=1;AF=0.60;AFR_AF=0.63;AMR_AF=0.68;AN=2;ASN_AF=0.29;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5971;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10242243 rs263411 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.60;AMR_AF=0.59;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4974;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0151;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 10258762 rs2302860 G C 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.61;AMR_AF=0.69;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5553;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 10264480 rs3844283 C G 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.18;AMR_AF=0.44;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3046;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 10276163 rs708035 T A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.77;AMR_AF=0.78;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7888;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 10280753 rs11465932 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.21;AMR_AF=0.52;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3917;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +3 10353626 rs35671 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1920;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 10370486 rs4327369 G C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.48;AMR_AF=0.34;AN=2;ASN_AF=0.62;AVGPOST=0.9994;ERATE=0.0031;EUR_AF=0.27;LDAF=0.4198;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10379923 rs35678 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9966;ERATE=0.0069;EUR_AF=0.42;LDAF=0.5269;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10382148 rs154242 G A 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.71;AMR_AF=0.70;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7146;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10387059 rs241509 C A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.12;AMR_AF=0.52;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4060;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10401576 rs61736451 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0064;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 10443827 rs13084776 G C 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.11;AMR_AF=0.29;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1403;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 10885920 rs2304725 T C 100 PASS AA=t;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3346;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 10975745 rs2272399 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.18;AMR_AF=0.24;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3346;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 11300707 rs901865 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8223;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 11350553 rs2305686 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.19;AMR_AF=0.30;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2327;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 11596302 rs2305295 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9978;ERATE=0.0071;EUR_AF=0.31;LDAF=0.2497;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 11596348 rs14016 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.30;AMR_AF=0.24;AN=2;ASN_AF=0.40;AVGPOST=0.9986;ERATE=0.0117;EUR_AF=0.15;LDAF=0.2628;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 11643465 rs2276749 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9502;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 11831953 rs9267 C T 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.09;AMR_AF=0.47;AN=2;ASN_AF=0.19;AVGPOST=0.9987;ERATE=0.0031;EUR_AF=0.37;LDAF=0.2742;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 11871215 rs11551661 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.0035;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0617;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 11887991 rs408600 C G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.50;AMR_AF=0.42;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4077;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 12613866 rs2648307 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.97;AMR_AF=0.72;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.63;LDAF=0.5829;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 12616533 rs3773341 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.65;AMR_AF=0.28;AN=2;ASN_AF=0.57;AVGPOST=0.9969;ERATE=0.0969;EUR_AF=0.27;LDAF=0.4354;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12618262 rs9855183 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.43;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1586;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 12626516 rs3729931 G A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.68;AMR_AF=0.48;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.39;LDAF=0.3817;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 12838293 rs12631514 G C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9901;ERATE=0.0017;EUR_AF=0.58;LDAF=0.4618;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.49 +3 12845013 rs62620196 C T 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9979;ERATE=0.0014;EUR_AF=0.0013;LDAF=0.0038;RSQ=0.8037;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12845158 rs9835677 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4068;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12856856 rs2305398 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.95;AMR_AF=0.50;AN=2;ASN_AF=0.26;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5864;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12857493 rs2305397 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.33;AMR_AF=0.34;AN=2;ASN_AF=0.15;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.57;LDAF=0.3671;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12857823 rs731646 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.40;AMR_AF=0.38;AN=2;ASN_AF=0.29;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=0.57;LDAF=0.4272;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12858028 rs3732675 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.95;AMR_AF=0.48;AN=2;ASN_AF=0.40;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6093;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12859004 rs3732678 A C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.94;AMR_AF=0.46;AN=2;ASN_AF=0.26;AVGPOST=0.9900;ERATE=0.0007;EUR_AF=0.62;LDAF=0.5731;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12861586 rs4684883 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.30;AN=2;ASN_AF=0.12;AVGPOST=0.9947;ERATE=0.0007;EUR_AF=0.16;LDAF=0.1518;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0124;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12861608 rs3817121 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.29;AN=2;ASN_AF=0.12;AVGPOST=0.9945;ERATE=0.0004;EUR_AF=0.16;LDAF=0.1432;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 12875443 rs12629133 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.45;AVGPOST=0.9988;ERATE=0.0014;EUR_AF=0.61;LDAF=0.4849;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 13368892 rs2271509 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.43;AMR_AF=0.42;AN=2;ASN_AF=0.34;AVGPOST=0.9975;ERATE=0.0029;EUR_AF=0.48;LDAF=0.4225;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13379400 rs3773302 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.79;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13381419 rs114096350 C T 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0042;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 13383540 rs2271504 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.88;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5713;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13383650 rs142129326 G T 100 PASS AA=G;AC=1;AF=0.0037;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0037;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 13395579 rs2280084 C A 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.87;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5689;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +3 13399786 rs6795271 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.24;AMR_AF=0.26;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2093;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13407556 rs3732671 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.88;AMR_AF=0.48;AN=2;ASN_AF=0.43;AVGPOST=0.9989;ERATE=0.0015;EUR_AF=0.53;LDAF=0.5716;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13421150 rs7628051 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.80;AMR_AF=0.44;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5270;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13438830 rs13066607 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.82;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0023;EUR_AF=0.53;LDAF=0.5340;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13670481 rs2242023 A G 100 PASS AA=a;AC=2;AF=0.70;AFR_AF=0.56;AMR_AF=0.80;AN=2;ASN_AF=0.78;AVGPOST=0.9989;ERATE=0.0009;EUR_AF=0.68;LDAF=0.7006;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 13670536 rs9843344 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.77;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8096;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13670776 rs4684968 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.77;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.67;LDAF=0.8035;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 13670837 rs4684969 T G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.77;AMR_AF=0.81;AN=2;ASN_AF=0.99;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.67;LDAF=0.8030;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +3 13679044 rs4684148 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.68;AMR_AF=0.38;AN=2;ASN_AF=0.60;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.31;LDAF=0.4821;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 13679203 rs1061375 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.77;AMR_AF=0.40;AN=2;ASN_AF=0.60;AVGPOST=0.9991;ERATE=0.0007;EUR_AF=0.31;LDAF=0.5019;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 13679335 rs1061376 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.68;AMR_AF=0.38;AN=2;ASN_AF=0.60;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.31;LDAF=0.4817;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 13916407 rs3749319 G T 100 PASS AA=t;AC=1;AF=0.55;AFR_AF=0.32;AMR_AF=0.60;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5466;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 14187449 rs2228001 G T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.73;AN=2;ASN_AF=0.65;AVGPOST=0.9969;ERATE=0.0026;EUR_AF=0.59;LDAF=0.6566;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 14187699 rs2733532 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.73;AMR_AF=0.74;AN=2;ASN_AF=0.66;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6677;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 14190237 rs2279017 T G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.72;AN=2;ASN_AF=0.65;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6560;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 14197987 rs2958057 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 14200136 rs200157068 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.7129;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 14201352 rs3731125 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0562;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 14489107 rs62233560 G A 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0074;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 14526538 rs1062540 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.07;AMR_AF=0.40;AN=2;ASN_AF=0.14;AVGPOST=0.9954;ERATE=0.0020;EUR_AF=0.54;LDAF=0.3060;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.07,-0.80 +3 14708918 rs2280383 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.63;AMR_AF=0.84;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7838;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 14709058 rs2280382 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0818;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 14712473 rs1901 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.49;AMR_AF=0.44;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3707;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 14724345 rs17040154 G A 100 PASS AA=G;AC=1;AF=0.06;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0580;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 14724413 rs9821143 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.24;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.37;LDAF=0.3353;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 14745857 rs17040196 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4056;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 14755572 rs6765537 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4070;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 14755617 rs6790129 C G 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.47;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4090;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 14768554 rs17255247 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.30;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3665;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 14801550 rs2729697 G A 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.06;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9989;ERATE=0.0012;EUR_AF=0.35;LDAF=0.2445;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.34,-0.00 +3 14862121 rs61751584 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.06;AN=2;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0311;RSQ=0.9754;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 14939198 rs2117775 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.83;AMR_AF=0.71;AN=2;ASN_AF=0.56;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7064;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +3 14939471 rs67571220 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0136;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 14939479 rs2164356 G T 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.74;AMR_AF=0.69;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6713;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 14949268 rs9818644 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.74;AMR_AF=0.69;AN=2;ASN_AF=0.55;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6691;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.00 +3 14965466 rs4685234 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.78;AMR_AF=0.75;AN=2;ASN_AF=0.60;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.67;LDAF=0.6908;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 14965507 rs4685235 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9611;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 15311325 rs1287467 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.65;AMR_AF=0.54;AN=2;ASN_AF=0.14;AVGPOST=0.9966;ERATE=0.0231;EUR_AF=0.70;LDAF=0.5152;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 15455717 rs2290537 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.25;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3760;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15515695 rs2305616 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.37;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4639;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15516481 rs924812 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.3853;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15516910 rs3816526 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.3853;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +3 15517025 rs2305615 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.59;AMR_AF=0.38;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4671;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15518731 rs2305612 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.37;AMR_AF=0.34;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4029;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15563178 rs73033051 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1431;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15613279 rs56298314 T G 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.08;AMR_AF=0.11;AN=2;ASN_AF=0.33;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1519;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15686776 rs3817641 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0064;EUR_AF=0.10;LDAF=0.1478;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15727823 rs7630642 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.27;AMR_AF=0.14;AN=2;ASN_AF=0.55;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2602;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 15737610 rs2470547 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.18;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4530;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 15737689 rs2470548 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.34;AMR_AF=0.65;AN=2;ASN_AF=0.39;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4939;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 15737698 rs2470549 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.18;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4527;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 15752830 rs2455833 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.12;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.60;LDAF=0.4387;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 15753641 rs2455834 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.12;AMR_AF=0.62;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4305;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 15807725 rs6789076 T A 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.20;AMR_AF=0.62;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4493;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16242101 rs3796301 C T 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1618;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16249998 rs1505609 A T 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.36;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2055;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16268974 rs15767 T A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.56;AMR_AF=0.43;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3890;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 16268986 rs14576 C A 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.37;AMR_AF=0.41;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3314;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 16358584 rs690241 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.76;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5873;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 16364919 rs690216 A C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.76;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5886;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 16399590 rs35271329 C T 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0024;EUR_AF=0.11;LDAF=0.0570;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0236;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16535229 rs3815962 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.39;AMR_AF=0.44;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.37;LDAF=0.3805;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16633664 rs57842038 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2112;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16636785 rs2303590 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.45;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.11;LDAF=0.2121;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16638467 rs2303591 A G 100 PASS AA=a;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2112;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16638963 rs74208885 T G 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.21;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2112;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 16646745 rs9847342 C G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9888;ERATE=0.0029;EUR_AF=0.89;LDAF=0.9494;RSQ=0.9116;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 17051328 rs7653834 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.48;AMR_AF=0.28;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4031;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 17053499 rs4602367 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.67;AMR_AF=0.50;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5800;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 17208267 rs1138454 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.25;AMR_AF=0.32;AN=2;ASN_AF=0.06;AVGPOST=0.9989;ERATE=0.0028;EUR_AF=0.39;LDAF=0.2645;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 17209195 rs2305291 G A 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0061;EUR_AF=0.15;LDAF=0.2828;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 18419859 rs10460976 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.56;AMR_AF=0.68;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 18427924 rs9845303 G T 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.56;AMR_AF=0.68;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6778;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 19436587 rs10470642 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.96;AMR_AF=0.75;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7537;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 20212189 rs1052930 A G 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.95;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.62;LDAF=0.8085;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 20216519 rs61729306 T A 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.18;AMR_AF=0.29;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2596;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 20219885 rs6550402 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.72;AMR_AF=0.67;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.6961;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 21462754 rs451242 A G 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.88;AVGPOST=0.9980;ERATE=0.0036;EUR_AF=0.77;LDAF=0.8007;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 21462787 rs427233 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.9254;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 23541057 rs1011754 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0526;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 24006477 rs4858097 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 24009279 rs67657770 A C 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.23;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3747;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 25502851 rs77748152 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0559;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 25666156 rs2293787 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.19;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1434;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 25674091 rs3736601 C A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.31;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2742;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 25679738 rs60422476 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.32;AN=2;ASN_AF=0.31;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3116;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 25775356 rs6550987 A C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.72;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8336;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 25836023 rs9831075 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.54;AMR_AF=0.80;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7783;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 26751493 rs35497952 A T 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.11;AMR_AF=0.16;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1362;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27297816 rs3213930 G C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.96;AMR_AF=0.64;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5644;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27326097 rs11129280 G T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2121;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27326451 rs10510594 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.37;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2098;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27332282 rs62255594 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2102;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27332820 rs10510592 A G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2125;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27350384 rs77257134 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.09;AVGPOST=0.9972;ERATE=0.0019;EUR_AF=0.27;LDAF=0.1956;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27353716 rs552647 C A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.96;AMR_AF=0.64;AN=2;ASN_AF=0.23;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.53;LDAF=0.5634;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27394419 rs12494966 T G 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.39;AN=2;ASN_AF=0.14;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2526;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 27424718 rs1472256 A G 100 PASS AA=a;AC=2;AF=0.93;AFR_AF=0.85;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9332;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 27462259 rs189574936 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 28520417 rs1563656 T A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.35;AMR_AF=0.45;AN=2;ASN_AF=0.60;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4611;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 28533658 rs13100556 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2298;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 29476428 rs3773018 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.51;AMR_AF=0.49;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4497;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 29529907 rs2371695 G A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.58;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5610;RSQ=0.9993;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 29804487 rs1371839 A T 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.64;AMR_AF=0.41;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.39;LDAF=0.4091;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 29804509 rs1371840 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.69;AMR_AF=0.47;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4560;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 30029724 rs1868491 C T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.14;AMR_AF=0.33;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2656;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 30032530 rs2197896 A G 100 PASS AA=a;AC=2;AF=0.32;AFR_AF=0.79;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.05;LDAF=0.3210;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 30713126 rs11466512 T A 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3113;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 30885806 rs1494738 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.51;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4707;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 31712393 rs3749405 C T 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.84;AMR_AF=0.41;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.37;LDAF=0.5588;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 31725316 rs2278959 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.10;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9977;ERATE=0.0010;EUR_AF=0.30;LDAF=0.2682;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 31789582 rs2290532 T C 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.05;AMR_AF=0.52;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.45;LDAF=0.4578;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +3 32200322 rs2305361 T C 100 PASS AA=c;AC=2;AF=0.47;AFR_AF=0.61;AMR_AF=0.34;AN=2;ASN_AF=0.61;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.33;LDAF=0.4654;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +3 32586346 rs146648720 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +3 32586374 rs199851895 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 32758763 rs11129531 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.07;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9940;ERATE=0.0025;EUR_AF=0.63;LDAF=0.4619;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 32766905 rs6550155 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.43;AMR_AF=0.25;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2894;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 32927509 rs6774703 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33055721 rs4302331 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9405;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33063050 rs13093698 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1582;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 33138544 rs7614776 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.89;LDAF=0.9311;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +3 33138549 rs7637099 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.10;AMR_AF=0.62;AN=2;ASN_AF=0.48;AVGPOST=0.9953;ERATE=0.0006;EUR_AF=0.63;LDAF=0.4713;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 33175793 rs4234239 C A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.87;AMR_AF=0.84;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8757;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33194990 rs6810039 C A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.74;AMR_AF=0.57;AN=2;ASN_AF=0.89;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.41;LDAF=0.6334;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33195284 rs61743511 G A 100 PASS AA=G;AC=2;AF=0.15;AFR_AF=0.09;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1544;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33195309 rs61743461 A G 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.24;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1895;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33216350 rs4257493 G A 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.15;LDAF=0.1385;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33255592 rs9637517 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9967;ERATE=0.0006;EUR_AF=0.84;LDAF=0.9267;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33434831 rs2293250 G A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.54;AMR_AF=0.60;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5325;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33454342 rs2272152 G A 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.34;AMR_AF=0.35;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3199;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33458266 rs3736563 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.51;AMR_AF=0.50;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4547;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 33866868 rs12488699 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.29;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9964;ERATE=0.0037;EUR_AF=0.22;LDAF=0.3140;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 33868104 rs189083325 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 33877508 rs3792595 T A 100 PASS AA=t;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=0.9986;ERATE=0.0021;EUR_AF=0.09;LDAF=0.2031;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 33877626 rs3792594 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=0.9930;ERATE=0.0269;EUR_AF=0.24;LDAF=0.3392;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 33887102 rs11928792 A G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.28;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3083;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 33895391 rs3183982 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.22;AMR_AF=0.34;AN=2;ASN_AF=0.36;AVGPOST=0.9817;ERATE=0.0210;EUR_AF=0.18;LDAF=0.2629;RSQ=0.9669;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.83,-0.00,-5.00 +3 33905471 rs11922311 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.29;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2057;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 33905566 rs1127732 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 33907945 rs3183987 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.28;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 35725250 rs969818 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6747;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 36756806 rs200646257 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0005;RSQ=0.7748;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +3 37083740 rs9876116 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.44;AMR_AF=0.43;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3459;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 37096024 rs749072 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.30;AN=2;ASN_AF=0.59;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3524;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 37107470 rs2302503 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.39;AMR_AF=0.43;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0017;EUR_AF=0.45;LDAF=0.3387;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 37144535 rs2302507 C A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.47;AMR_AF=0.47;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3734;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 37150988 rs6806252 C G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.70;AMR_AF=0.52;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.51;LDAF=0.4557;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 37163039 rs336595 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 37285152 rs2271548 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.35;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2314;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 37366459 rs11718848 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.35;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2377;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 37368755 rs62241896 T A 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.35;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2381;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 37535984 rs2507940 C G 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.35;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5909;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +3 37574951 rs267561 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.42;AMR_AF=0.70;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38052725 rs933135 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.17;AVGPOST=0.9950;ERATE=0.0005;EUR_AF=0.02;LDAF=0.0587;RSQ=0.9678;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38087024 rs36046028 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=0.9959;ERATE=0.0004;EUR_AF=0.21;LDAF=0.1155;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38271881 rs6599079 C T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.44;AMR_AF=0.11;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1789;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38289251 rs3925158 C G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.46;AMR_AF=0.11;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0011;EUR_AF=0.12;LDAF=0.1833;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38293904 rs9880223 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.52;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1965;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38347633 rs34043027 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38347851 rs2073714 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38350479 rs818819 T C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.83;AMR_AF=0.82;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8222;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38350519 rs818818 G A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.83;AMR_AF=0.82;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8218;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38350543 rs818817 A G 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8303;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38350630 rs704929 C A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.83;AMR_AF=0.82;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8217;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38355225 rs73064822 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1901;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38357817 rs2070492 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.13;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1210;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38390020 rs2615631 C A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9573;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38401839 rs818850 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9707;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38401918 rs818849 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.71;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9045;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38404472 rs17118 C A 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.14;AMR_AF=0.29;AN=2;ASN_AF=0.25;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.33;LDAF=0.2617;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38406648 rs704942 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.80;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9255;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38406773 rs704943 G T 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.70;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9013;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38406793 rs2234608 T G 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.54;AMR_AF=0.90;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7966;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38408361 rs843890 G A 100 PASS AA=g;AC=2;AF=0.90;AFR_AF=0.70;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9022;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38442490 rs2070488 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.16;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.3606;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38519424 rs2070489 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.33;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4822;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38521156 rs13097628 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3596;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38524742 rs1046048 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.13;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.3556;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 38592406 rs1805126 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.72;AMR_AF=0.42;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5059;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 38622467 rs7430407 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9161;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38674712 rs6599230 T C 100 PASS AA=t;AC=2;AF=0.77;AFR_AF=0.91;AMR_AF=0.71;AN=2;ASN_AF=0.68;AVGPOST=0.9973;ERATE=0.0008;EUR_AF=0.77;LDAF=0.7666;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38739574 rs6599241 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38739845 rs6599242 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9346;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38945560 rs4073113 A G 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.47;AMR_AF=0.66;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6019;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 38961537 rs6779297 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.92;AMR_AF=0.83;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8848;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39150559 rs146873178 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0002;LDAF=0.0111;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 39166509 rs784507 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.65;AMR_AF=0.89;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8254;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39167905 rs784506 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.92;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8956;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39178899 rs784495 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.12;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.66;LDAF=0.5082;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +3 39179909 rs784497 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.17;AMR_AF=0.62;AN=2;ASN_AF=0.68;AVGPOST=0.9942;ERATE=0.0061;EUR_AF=0.67;LDAF=0.5508;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39180099 rs784498 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.51;AMR_AF=0.73;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.77;LDAF=0.7005;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39180162 rs811969 A C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.17;AMR_AF=0.64;AN=2;ASN_AF=0.72;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.69;LDAF=0.5698;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39180263 rs704959 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.17;AMR_AF=0.63;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.67;LDAF=0.5618;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39184959 rs1274958 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.79;AMR_AF=0.75;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7674;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39185077 rs1274957 G A 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.14;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5146;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39185248 rs784519 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8931;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39185968 rs810743 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.76;LDAF=0.7435;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39186728 rs784517 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.14;AMR_AF=0.56;AN=2;ASN_AF=0.56;AVGPOST=0.9979;ERATE=0.0096;EUR_AF=0.59;LDAF=0.4758;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39229142 rs147045101 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0092;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 39229900 rs6805248 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9926;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39431081 rs2270770 G A 100 PASS AA=g;AC=2;AF=0.45;AFR_AF=0.09;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4506;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39433147 rs1995236 G A 100 PASS AA=a;AC=2;AF=0.88;AFR_AF=0.56;AMR_AF=0.98;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8803;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 39452430 rs200785492 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0002;LDAF=0.0006;RSQ=0.7200;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +3 40204178 rs1714414 T C 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.42;AMR_AF=0.50;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4305;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 40231883 rs1317317 C T 100 PASS AA=c;AC=2;AF=0.85;AFR_AF=0.75;AMR_AF=0.92;AN=2;ASN_AF=0.81;AVGPOST=0.9990;ERATE=0.0025;EUR_AF=0.91;LDAF=0.8497;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 40251392 rs1799418 T C 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.46;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4200;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 40251628 rs1799419 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.30;AMR_AF=0.46;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4200;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 40498845 rs2276868 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.28;AMR_AF=0.61;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5187;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.27,-0.00 +3 40498933 rs4973904 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9765;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.62,-0.00 +3 41280827 rs2293303 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0458;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 41291081 rs2293304 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9885;ERATE=0.0052;EUR_AF=0.43;LDAF=0.2907;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 41841716 rs4973986 A C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.77;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8571;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 41925398 rs1052501 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.32;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7070;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 41925423 rs1716687 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9328;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 41937000 rs1717003 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.27;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=0.9796;ERATE=0.0066;EUR_AF=0.80;LDAF=0.6905;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +3 41938500 rs1717005 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9323;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 41939993 rs1625226 T A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.60;AMR_AF=0.87;AN=2;ASN_AF=0.89;AVGPOST=0.9860;ERATE=0.0362;EUR_AF=0.84;LDAF=0.8019;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 41942199 rs1717007 T C 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.29;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7001;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 41952781 rs1716991 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9495;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 41957466 rs1716698 T G 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.28;AMR_AF=0.80;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6969;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 41960006 rs1716975 T C 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.28;AMR_AF=0.79;AN=2;ASN_AF=0.84;AVGPOST=0.9988;ERATE=0.0015;EUR_AF=0.80;LDAF=0.6927;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 41961168 rs1716979 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.59;AVGPOST=0.9898;ERATE=0.0008;EUR_AF=0.38;LDAF=0.3403;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 41996136 rs2272007 T C 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.29;AMR_AF=0.80;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6974;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 41996275 rs7651623 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9314;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42226151 rs4234445 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.69;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7850;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42236415 rs9851455 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.75;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8337;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42251263 rs2290134 C T 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.41;AMR_AF=0.65;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5064;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42251329 rs2290133 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3652;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42305131 rs754635 C G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.63;AMR_AF=0.80;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7677;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +3 42568929 rs2229722 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.50;AMR_AF=0.27;AN=2;ASN_AF=0.58;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.15;LDAF=0.3602;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 42599091 rs2271184 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.44;AMR_AF=0.22;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.3213;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 42599234 rs2271185 C T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.78;AMR_AF=0.30;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 42610374 rs2271186 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.78;AMR_AF=0.30;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4931;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 42610515 rs2271187 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.40;AMR_AF=0.20;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.18;LDAF=0.3012;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 42727306 rs200216330 C A 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0012;RSQ=0.7642;SNPSOURCE=EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 42727982 rs74843241 A C 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.01;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0160;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 42728144 rs6805421 A G 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.43;AMR_AF=0.63;AN=2;ASN_AF=0.80;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6443;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 42733468 rs123509 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.94;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8830;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42734750 rs74853274 C A 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.02;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0481;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 42738594 rs2290972 C T 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0453;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 42750446 rs2240860 G A 100 PASS AA=G;AC=2;AF=0.25;AFR_AF=0.27;AMR_AF=0.23;AN=2;ASN_AF=0.32;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2493;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42772038 rs12495805 A T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.28;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1961;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 42774475 rs17074778 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.24;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2757;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.00 +3 42787469 rs2240859 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.54;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.4831;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42788823 rs73829283 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.22;AVGPOST=0.9789;ERATE=0.0288;EUR_AF=0.03;LDAF=0.1180;RSQ=0.9321;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 42788914 rs12490743 G C 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1699;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 42799858 rs339678 T A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42907112 rs2228468 A C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.24;AMR_AF=0.56;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.40;LDAF=0.4638;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42917047 rs9865715 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 42956273 rs1427801 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9401;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 43121559 rs604033 C T 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.84;AMR_AF=0.84;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7914;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 43121633 rs201446071 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 43122966 rs78772257 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.23;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4635;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +3 43602803 rs3772165 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.42;AMR_AF=0.71;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6540;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 43607136 rs7616708 T C 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.35;AMR_AF=0.70;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6371;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +3 44399668 rs4682970 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.69;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8752;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 44437870 rs6441838 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9690;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.46,-0.00 +3 44612050 rs9873604 C T 100 PASS AA=.;AC=1;AF=0.76;AFR_AF=0.69;AMR_AF=0.74;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7560;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44692564 rs2272044 C G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.81;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.15;LDAF=0.3082;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.72 +3 44761729 rs17076938 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0654;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44775962 rs4682752 A G 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6873;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44794881 rs112645395 A C 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.04;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0403;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44803130 rs4682994 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0758;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44819565 rs4682753 T G 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0667;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44869026 rs4682999 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9971;RSQ=0.9299;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 44881909 rs76526953 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0635;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44903434 rs2292181 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.08;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=0.9937;ERATE=0.0005;EUR_AF=0.06;LDAF=0.0645;RSQ=0.9553;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.18 +3 44929287 rs2271087 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.16;AMR_AF=0.38;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4241;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44943069 rs1995640 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5423;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44943104 rs937838 G C 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0684;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44943389 rs1995641 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.45;AMR_AF=0.47;AN=2;ASN_AF=0.83;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5348;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44948479 rs3749195 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.65;AMR_AF=0.55;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6309;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44948590 rs9876921 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.47;AMR_AF=0.53;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5877;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44952407 rs1520082 G C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.67;AMR_AF=0.55;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6416;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 44952942 rs6777798 A C 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.67;AMR_AF=0.55;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6431;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 45052775 rs6794 G C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.72;AMR_AF=0.60;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6737;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 45077123 rs13963 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.40;AMR_AF=0.49;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5387;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 45077458 rs8318 G A 100 PASS AA=g;AC=1;AF=0.57;AFR_AF=0.51;AMR_AF=0.50;AN=2;ASN_AF=0.88;AVGPOST=0.9932;ERATE=0.0012;EUR_AF=0.40;LDAF=0.5639;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.41 +3 45127515 rs9874077 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9397;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45132637 rs1879240 T C 100 PASS AA=t;AC=1;AF=0.29;AFR_AF=0.22;AMR_AF=0.29;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2883;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 45134822 rs3749191 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.57;AMR_AF=0.73;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.63;LDAF=0.7230;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45137087 rs2037358 T G 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.14;AMR_AF=0.61;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5184;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45527218 rs7610357 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.39;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8240;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45533224 rs2128361 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.39;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8236;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45542083 rs2306522 T C 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.09;AMR_AF=0.63;AN=2;ASN_AF=0.79;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5448;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45559519 rs2170549 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.54;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8876;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45565554 rs267220 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.59;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8972;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45636335 rs267238 A G 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.30;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5179;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 45637253 rs267237 C T 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.62;AMR_AF=0.64;AN=2;ASN_AF=0.92;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6816;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 45637439 rs267236 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.73;AMR_AF=0.65;AN=2;ASN_AF=0.90;AVGPOST=0.9834;ERATE=0.0125;EUR_AF=0.58;LDAF=0.7082;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 45748429 rs2742441 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.40;AMR_AF=0.48;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.4301;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 45748435 rs2673039 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.58;LDAF=0.3689;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 45761115 rs2064062 G C 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.62;AMR_AF=0.58;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.5690;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 45772772 rs2673055 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.62;AMR_AF=0.58;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5690;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 45776704 rs201552459 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 45776900 rs1468543 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.58;LDAF=0.3691;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 45779136 rs1468542 A T 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.62;AMR_AF=0.58;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.70;LDAF=0.5713;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 45817418 rs758386 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9483;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0105;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45821624 rs2252547 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.49;AMR_AF=0.61;AN=2;ASN_AF=0.39;AVGPOST=0.9779;ERATE=0.0177;EUR_AF=0.57;LDAF=0.5126;RSQ=0.9682;SNPSOURCE=LOWCOV,EXOME;THETA=0.0129;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +3 45977899 rs1873002 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45989044 rs2234358 T G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.36;AMR_AF=0.59;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5352;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 45996761 rs1463680 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8588;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46001063 rs1532071 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.29;AMR_AF=0.58;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5178;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +3 46008790 rs3796375 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.09;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4269;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46009864 rs3733100 C G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.23;AMR_AF=0.62;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5201;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46010077 rs4683158 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.9173;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46016851 rs751552 A T 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.08;AMR_AF=0.55;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4250;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46021218 rs4682801 G T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.44;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7888;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46307377 rs142318962 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.0004;RSQ=0.8054;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.850:-5.00,0.00,-5.00 +3 46399798 rs1799865 T C 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.33;AMR_AF=0.35;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.3199;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46449978 rs11266744 A C 100 PASS AA=A;AC=2;AF=0.36;AFR_AF=0.07;AMR_AF=0.38;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3583;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46450070 rs3204849 T A 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.53;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3699;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46479668 rs3213479 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.32;AMR_AF=0.51;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.33;LDAF=0.4356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46480958 rs2073495 C G 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.07;AMR_AF=0.37;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2797;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46484898 rs7615975 T G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=1.00;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.76;LDAF=0.8921;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46490366 rs2230895 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.22;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1705;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46490474 rs2230894 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2103;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +3 46491948 rs6774882 T A 100 PASS AA=A;AC=2;AF=0.21;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.17;LDAF=0.2130;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.27,-0.00 +3 46501100 rs17078878 C A 100 PASS AA=C;AC=2;AF=0.15;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1463;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46501213 rs1126478 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.96;AMR_AF=0.47;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5850;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46501268 rs1126477 C T 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.74;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4296;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 46713102 rs6776565 C T 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.18;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2999;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46713507 rs201171398 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +3 46714797 rs11130103 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2950;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.69,-0.01 +3 46714821 rs11130104 C G 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2946;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.67,-0.01 +3 46717065 rs7635360 C G 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2999;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46717931 rs6808525 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.83;AMR_AF=0.80;AN=2;ASN_AF=0.68;AVGPOST=0.9980;ERATE=0.0037;EUR_AF=0.74;LDAF=0.7550;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46718298 rs6806400 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.95;AMR_AF=0.82;AN=2;ASN_AF=0.67;AVGPOST=0.9977;ERATE=0.0089;EUR_AF=0.75;LDAF=0.7856;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46722692 rs13080080 G T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.77;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6441;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46723551 rs4683310 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0024;EUR_AF=0.42;LDAF=0.3276;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 46944274 rs1138518 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6403;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47033937 rs13066214 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.58;LDAF=0.4981;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +3 47043538 rs2305634 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.59;LDAF=0.4980;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +3 47044122 rs11928558 A T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9567;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.30,-0.00 +3 47045739 rs1079276 C G 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.59;LDAF=0.4987;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47046842 rs2305638 G C 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.51;AMR_AF=0.56;AN=2;ASN_AF=0.53;AVGPOST=0.9954;ERATE=0.0014;EUR_AF=0.59;LDAF=0.5538;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +3 47079112 rs6768722 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6829;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47125385 rs4082155 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47162661 rs6767907 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.79;AMR_AF=0.71;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.61;LDAF=0.6837;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47276968 rs2276854 C T 100 PASS AA=c;AC=2;AF=0.57;AFR_AF=0.55;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5672;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47277885 rs13094438 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.29;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5042;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47282303 rs2276853 G A 100 PASS AA=g;AC=2;AF=0.56;AFR_AF=0.52;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5594;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47318747 rs924009 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9661;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47449058 rs900688 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9584;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47452087 rs900689 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9603;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47452786 rs1531875 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4814;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47454399 rs6789730 G A 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9605;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.34,-0.00 +3 47458750 rs2306628 C T 100 PASS AA=C;AC=2;AF=0.02;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0250;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +3 47459679 rs12487736 C T 100 PASS AA=c;AC=2;AF=0.48;AFR_AF=0.28;AMR_AF=0.53;AN=2;ASN_AF=0.46;AVGPOST=0.9737;ERATE=0.0063;EUR_AF=0.59;LDAF=0.4777;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.48,-0.01 +3 47462200 rs900690 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9600;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47467590 rs201263232 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +3 47539751 rs2170814 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9608;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +3 47539969 rs13059519 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.46;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4786;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47543389 rs3816779 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.45;AVGPOST=0.9962;ERATE=0.0018;EUR_AF=0.60;LDAF=0.4773;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +3 47604299 rs4858839 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47734700 rs12635438 A G 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2488;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 47898943 rs150980381 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +3 47956424 rs1137524 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.49;AMR_AF=0.36;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3369;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 47958037 rs1060407 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2317;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 48414215 rs9815103 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3606;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 48415007 rs4858793 C G 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5754;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 48419897 rs6442117 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.65;AMR_AF=0.62;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6152;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 48422235 rs6784322 T A 100 PASS AA=t;AC=1;AF=0.37;AFR_AF=0.27;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3679;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 48454468 rs3214041 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.27;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3662;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 48476431 rs13062723 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 48659009 rs9834639 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.25;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9963;ERATE=0.0064;EUR_AF=0.08;LDAF=0.1083;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 48670483 rs2276849 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.03;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0111;RSQ=0.9623;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 48716993 rs3816836 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.0020;AMR_AF=0.28;AN=2;ASN_AF=0.51;AVGPOST=0.9990;ERATE=0.0024;EUR_AF=0.01;LDAF=0.1835;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 48719638 rs7633840 T C 100 PASS AA=t;AC=2;AF=0.69;AFR_AF=0.47;AMR_AF=0.75;AN=2;ASN_AF=0.94;AVGPOST=0.9973;ERATE=0.0089;EUR_AF=0.63;LDAF=0.6926;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 48727112 rs4858798 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.49;AMR_AF=0.75;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7020;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 48897078 rs6414612 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9940;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49004723 rs6446196 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.60;AMR_AF=0.77;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7344;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49053219 rs7100 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8770;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49054692 rs3087866 T C 100 PASS AA=c;AC=2;AF=0.88;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8770;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49068091 rs146677553 G A 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 49135961 rs13064784 C G 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.54;AMR_AF=0.76;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7167;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49137904 rs4521268 G T 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.56;AMR_AF=0.77;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7308;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49141859 rs58012546 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0110;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 49148890 rs4292260 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.65;AMR_AF=0.85;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8231;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49166069 rs9865051 C T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.89;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8812;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49200627 rs4955418 A G 100 PASS AA=g;AC=2;AF=0.71;AFR_AF=0.55;AMR_AF=0.72;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7093;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49200692 rs4955419 T A 100 PASS AA=t;AC=2;AF=0.69;AFR_AF=0.46;AMR_AF=0.71;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.64;LDAF=0.6859;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49273996 rs12631989 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.44;AMR_AF=0.69;AN=2;ASN_AF=0.93;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.64;LDAF=0.6777;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49365269 rs6795772 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.39;AMR_AF=0.65;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6344;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49548008 rs2131107 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9811;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49548294 rs2329024 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49690199 rs4855885 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8998;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49699447 rs199632264 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 49701298 rs2005557 G A 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.38;AMR_AF=0.63;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6133;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49720393 rs2960548 C G 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.38;AMR_AF=0.63;AN=2;ASN_AF=0.93;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6111;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49723784 rs9713651 C A 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.23;AMR_AF=0.47;AN=2;ASN_AF=0.66;AVGPOST=0.8929;ERATE=0.0500;EUR_AF=0.40;LDAF=0.4336;RSQ=0.7993;SNPSOURCE=EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:1.550:-2.62,-0.44,-0.20 +3 49724808 rs3020779 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.72;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9923;ERATE=0.0027;EUR_AF=0.84;LDAF=0.8552;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.04,-1.10 +3 49736565 rs6785549 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.41;AMR_AF=0.66;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6029;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49739086 rs1491986 C T 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.42;AMR_AF=0.66;AN=2;ASN_AF=0.82;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6038;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.51,-0.00 +3 49739507 rs1491985 G C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8436;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49753003 rs34614773 T G 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.42;AMR_AF=0.66;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6037;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49753788 rs11720705 A G 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8441;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49760039 rs1466685 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9888;RSQ=0.9646;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 49785297 rs200393807 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0004;RSQ=0.8551;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +3 49928691 rs7433231 T C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 50103917 rs2023953 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0881;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 50114515 rs7061 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.7161;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 50144951 rs1061474 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.89;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.58;LDAF=0.7171;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 50153356 rs1138536 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.7171;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 50197097 rs1046953 C T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.32;AMR_AF=0.33;AN=2;ASN_AF=0.21;AVGPOST=0.9983;ERATE=0.0012;EUR_AF=0.41;LDAF=0.3252;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 50222926 rs1046956 T A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.63;AMR_AF=0.74;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7628;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 50224225 rs12632110 A G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.61;AMR_AF=0.51;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.5612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.54,-0.01 +3 50231621 rs4688684 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0192;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 50327845 rs117692440 C G 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9994;ERATE=0.0002;LDAF=0.0183;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 50332697 rs13100173 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.38;AN=2;ASN_AF=0.09;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2679;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 50357869 rs709210 A C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.79;AVGPOST=0.9940;ERATE=0.0006;EUR_AF=0.64;LDAF=0.7736;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 50597092 rs1034405 G A 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.62;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8252;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.46,-0.00 +3 50609123 rs636168 T C 100 PASS AA=c;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9589;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 50609624 rs2232248 T G 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.70;AMR_AF=0.66;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.87;LDAF=0.7257;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 50645793 rs77555465 C G 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.72;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 51101936 rs181257952 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 51273773 rs1480361 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9940;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 51661749 rs143125010 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0128;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 51895850 rs986539 C T 100 PASS AA=t;AC=2;AF=0.89;AFR_AF=0.64;AMR_AF=0.92;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8871;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 51978220 rs28547534 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9951;RSQ=0.8912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 51978640 rs4687792 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.28;AN=2;ASN_AF=0.43;AVGPOST=0.9963;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2012;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 51990315 rs28651222 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9950;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9956;RSQ=0.4995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.64,-0.11 +3 52256697 rs352140 C T 100 PASS AA=c;AC=1;AF=0.46;AFR_AF=0.31;AMR_AF=0.52;AN=2;ASN_AF=0.44;AVGPOST=0.9988;ERATE=0.0008;EUR_AF=0.54;LDAF=0.4592;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52258372 rs352139 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.58;AMR_AF=0.55;AN=2;ASN_AF=0.45;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5283;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 0|1:1.000:-3.62,-0.00,-3.42 +3 52325759 rs2276834 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.68;AMR_AF=0.49;AN=2;ASN_AF=0.45;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5281;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52397098 rs138320093 A T 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0010;RSQ=0.8770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52430698 rs365048 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52433745 rs202094249 A G 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0011;RSQ=0.8780;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52453893 rs498778 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9651;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52471942 rs82825 G A 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.69;AMR_AF=0.84;AN=2;ASN_AF=0.98;AVGPOST=0.9974;ERATE=0.0006;EUR_AF=0.85;LDAF=0.8424;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +3 52492707 rs1541495 T C 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.95;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9493;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52506282 rs4312651 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9653;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52506426 rs6784615 C T 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9607;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52507719 rs13094915 G C 100 PASS AA=g;AC=2;AF=0.49;AFR_AF=0.52;AMR_AF=0.53;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0017;EUR_AF=0.43;LDAF=0.4871;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52510592 rs9856575 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9890;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52512318 rs2109559 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9607;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52514164 rs77017530 C T 100 PASS AA=C;AC=1;AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0697;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52522659 rs887514 T C 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9596;RSQ=0.9748;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-3.04,-0.47,-0.18 +3 52523405 rs887515 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.33;AMR_AF=0.80;AN=2;ASN_AF=0.98;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7545;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +3 52526535 rs2240897 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.03;AN=2;ASN_AF=0.09;AVGPOST=0.9980;ERATE=0.0003;LDAF=0.0298;RSQ=0.9744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52536743 rs201713438 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +3 52544470 rs9835659 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9877;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52546487 rs7644763 C T 100 PASS AA=T;AC=1;AF=0.94;AFR_AF=0.99;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9442;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52546820 rs2015971 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.16;AMR_AF=0.54;AN=2;ASN_AF=0.51;AVGPOST=0.9897;ERATE=0.0064;EUR_AF=0.46;LDAF=0.4249;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52551010 rs79979130 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0539;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52554304 rs7630214 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9849;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52555957 rs9853056 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.72;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.57;LDAF=0.6097;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52556369 rs35325270 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.33;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1298;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52556890 rs4434138 A G 100 PASS AA=a;AC=1;AF=0.42;AFR_AF=0.18;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.47;LDAF=0.4205;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52557038 rs4234633 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.17;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4155;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52557069 rs4234634 C T 100 PASS AA=C;AC=1;AF=0.10;AMR_AF=0.19;AN=2;ASN_AF=0.25;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0972;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52558008 rs13303 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.69;AMR_AF=0.66;AN=2;ASN_AF=0.51;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5968;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +3 52558133 rs13621 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4543;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52558904 rs34005367 A T 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.17;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4113;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52561779 rs11711421 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.33;AMR_AF=0.52;AN=2;ASN_AF=0.47;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4473;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52584715 rs2878628 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.40;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4566;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52584787 rs2251219 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.43;LDAF=0.3940;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52610651 rs17264436 T A 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.47;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3907;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52643307 rs3733045 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.56;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4936;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52643685 rs3755806 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3931;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52676065 rs11719685 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3930;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52692359 rs2590846 C G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3931;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52720080 rs1108842 A C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.57;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5498;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52721305 rs11177 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.47;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.42;LDAF=0.3889;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52727257 rs2289247 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.55;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52740182 rs6617 C G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.55;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.43;LDAF=0.4926;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.27 +3 52778347 rs2268026 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3940;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52797634 rs1029871 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.14;AMR_AF=0.47;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3856;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52800284 rs2230535 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3935;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52802402 rs2230534 A C 100 PASS AA=a;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3935;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52814256 rs2302417 T A 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.26;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=0.9860;ERATE=0.0069;EUR_AF=0.51;LDAF=0.4531;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.52,-0.16 +3 52820981 rs678 A T 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3574;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52821011 rs1042779 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.55;AMR_AF=0.49;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.40;LDAF=0.4612;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52821177 rs2286798 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.36;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.40;LDAF=0.4096;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52825528 rs1075653 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.54;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4484;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52825585 rs9324 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.59;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4598;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52829633 rs2286797 G A 100 PASS AA=G;AC=1;AF=0.07;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0673;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52830764 rs2240921 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.29;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1401;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52833805 rs3617 C A 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.74;AMR_AF=0.62;AN=2;ASN_AF=0.47;AVGPOST=0.9979;ERATE=0.0009;EUR_AF=0.49;LDAF=0.5655;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52837855 rs2710331 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.46;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4310;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52841758 rs147111922 C T 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=0.9994;ERATE=0.0003;LDAF=0.0309;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +3 52847544 rs17331178 C A 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0713;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52852060 rs2245538 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.66;AMR_AF=0.57;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52852538 rs4687657 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.17;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3076;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52853747 rs2276815 C G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.18;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3085;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52857778 rs34860124 T A 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.04;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0728;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52860936 rs2276817 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2865;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52861211 rs13072536 A T 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2865;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52864584 rs2071042 A G 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.66;AMR_AF=0.57;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4985;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52864635 rs2276818 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1074;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 52864693 rs2071041 T G 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.55;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3780;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52867715 rs6787916 G C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9625;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52867811 rs6776876 A T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9948;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9841;RSQ=0.8883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.01,-0.04 +3 52877720 rs4687668 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.60;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9049;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52878825 rs7629528 C A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.60;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9054;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 52886605 rs2276825 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.17;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2948;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 52968801 rs2710315 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53125922 rs11242 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5448;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53133526 rs2581829 A G 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.27;AMR_AF=0.60;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5641;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53212574 rs2306571 C G 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.32;AMR_AF=0.68;AN=2;ASN_AF=0.77;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6215;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +3 53222761 rs2306574 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.67;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7322;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53223291 rs7630600 T G 100 PASS AA=-;AC=2;AF=0.84;AFR_AF=0.66;AMR_AF=0.90;AN=2;ASN_AF=0.91;AVGPOST=0.9604;ERATE=0.0447;EUR_AF=0.88;LDAF=0.8363;RSQ=0.8875;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.95,-0.00 +3 53223927 rs1075865 C G 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.74;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9301;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53224002 rs900495 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9406;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53267133 rs6445573 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.85;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9661;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53700550 rs2250736 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.91;AMR_AF=0.58;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6554;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53766026 rs2612033 T C 100 PASS AA=t;AC=2;AF=0.92;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53769479 rs1045958 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.29;AN=2;ASN_AF=0.21;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.33;LDAF=0.2225;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 53776995 rs2612026 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.50;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8071;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53777176 rs2680648 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.29;AN=2;ASN_AF=0.31;AVGPOST=0.9973;ERATE=0.0031;EUR_AF=0.26;LDAF=0.2281;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 53778875 rs2253795 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1751;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 53856653 rs2241808 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.14;AMR_AF=0.47;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4439;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53857803 rs12676 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.91;AMR_AF=0.78;AN=2;ASN_AF=0.99;AVGPOST=0.9958;ERATE=0.0007;EUR_AF=0.71;LDAF=0.8379;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-3.14,-0.48,-0.18 +3 53882663 rs1025690 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.91;AMR_AF=0.67;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7971;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53883722 rs1025689 C G 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.10;AMR_AF=0.50;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4561;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53905308 rs1046677 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.74;AMR_AF=0.62;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6668;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53906513 rs4687757 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.62;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6650;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53910122 rs62752960 G A 100 PASS AA=g;AC=2;AF=0.54;AFR_AF=0.65;AMR_AF=0.49;AN=2;ASN_AF=0.89;AVGPOST=0.9478;ERATE=0.0370;EUR_AF=0.24;LDAF=0.5369;RSQ=0.9490;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +3 53911783 rs2276842 A G 100 PASS AA=A;AC=2;AF=0.13;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1298;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53912341 rs3733081 C A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.79;AMR_AF=0.62;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6792;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 53914093 rs3733082 G A 100 PASS AA=G;AC=2;AF=0.10;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0969;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 54961949 rs78978076 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.86;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8047;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 55733390 rs4955865 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.23;AMR_AF=0.45;AN=2;ASN_AF=0.36;AVGPOST=0.9772;ERATE=0.0059;EUR_AF=0.36;LDAF=0.3481;RSQ=0.9639;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 56041187 rs1379715 C T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.47;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.28;LDAF=0.3931;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +3 56601115 rs55865922 T C 100 PASS AA=T;AC=2;AF=0.13;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1330;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56627598 rs1491170 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9630;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56628055 rs139806311 A G 100 PASS AA=A;AC=2;AF=0.02;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0192;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56647799 rs17216685 T C 100 PASS AA=T;AC=2;AF=0.29;AFR_AF=0.45;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2865;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56650012 rs4681904 G C 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.49;AMR_AF=0.19;AN=2;ASN_AF=0.37;AVGPOST=0.9986;ERATE=0.0008;EUR_AF=0.12;LDAF=0.2805;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56658871 rs2291498 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.34;AMR_AF=0.18;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2322;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56667682 rs9835332 G C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.91;AMR_AF=0.67;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.7161;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56674190 rs1489949 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9679;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56695060 rs7619465 T A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.90;AMR_AF=0.67;AN=2;ASN_AF=0.92;AVGPOST=0.9942;ERATE=0.0095;EUR_AF=0.44;LDAF=0.7064;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +3 56763316 rs1565376 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.87;AMR_AF=0.62;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6658;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56763328 rs1565377 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.87;AMR_AF=0.62;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6658;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 56835761 rs3732508 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.04;AMR_AF=0.50;AN=2;ASN_AF=0.20;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.59;LDAF=0.3481;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.08,-0.00 +3 57132200 rs2291462 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.58;AMR_AF=0.86;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7089;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 57137090 rs2247656 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.73;AMR_AF=0.91;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7655;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +3 57138419 rs6780995 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.4995;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 57139972 rs1545981 A G 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.73;AMR_AF=0.91;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7660;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 57140108 rs2035654 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.58;AMR_AF=0.86;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7084;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 57261894 rs7643644 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.29;AMR_AF=0.05;AN=2;AVGPOST=0.9908;ERATE=0.0009;EUR_AF=0.0040;LDAF=0.0759;RSQ=0.9559;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:0.600:-0.11,-0.66,-4.70 +3 57294085 rs10510791 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.15;AMR_AF=0.50;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4812;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 57303684 rs11544593 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.0035;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.17;LDAF=0.0881;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 57528503 rs9311651 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.55;AMR_AF=0.20;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2075;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 57627500 rs9873675 T C 100 PASS AA=C;AC=1;AF=0.86;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.86;LDAF=0.8597;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 57743337 rs13400 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2283;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 57846577 rs2306056 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.18;AN=2;ASN_AF=0.44;AVGPOST=0.9945;ERATE=0.0076;EUR_AF=0.21;LDAF=0.2497;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58081888 rs1522384 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.58;AMR_AF=0.54;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.6024;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 58094157 rs2259091 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.73;AMR_AF=0.47;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.6128;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58095466 rs2708318 G T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.83;AMR_AF=0.52;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.6499;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 58095945 rs2686634 T G 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0493;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 58109162 rs1131356 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.47;AMR_AF=0.40;AN=2;ASN_AF=0.91;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.27;LDAF=0.5061;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58111285 rs3732633 T G 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.61;AMR_AF=0.41;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.5397;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58112440 rs2362903 A G 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.93;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.8103;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 58112488 rs2362904 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.77;AMR_AF=0.42;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.28;LDAF=0.5937;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58118555 rs12632456 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.64;AMR_AF=0.42;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.5637;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58118700 rs12638356 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.61;AMR_AF=0.42;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.28;LDAF=0.5403;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +3 58124238 rs141357606 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58131638 rs183917041 G A 100 PASS AA=g;AC=1;AF=0.0032;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58145263 rs12634123 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.63;AMR_AF=0.72;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.61;LDAF=0.7310;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 58154177 rs13079906 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0677;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 58154327 rs8640 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.55;AMR_AF=0.41;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.27;LDAF=0.5263;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58179028 rs3732630 T C 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.24;AMR_AF=0.43;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4159;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +3 58191242 rs17058970 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.27;AMR_AF=0.13;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1156;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 58191266 rs2070117 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.29;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3306;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58303123 rs1473971 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.19;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0910;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 58355230 rs75261945 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.16;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0782;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 58414382 rs62259769 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3679;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 58416538 rs4264746 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 58520859 rs4681862 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.62;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8839;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 58555386 rs7609991 G T 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.52;AN=2;ASN_AF=0.80;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5415;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 58870474 rs201305207 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.8198;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +3 59738064 rs1683356 A T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.33;AMR_AF=0.15;AN=2;ASN_AF=0.20;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.14;LDAF=0.2024;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 59997112 rs17255497 G A 100 PASS AA=g;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.18;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0969;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 59999690 rs13067835 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.32;AN=2;ASN_AF=0.28;AVGPOST=0.9977;ERATE=0.0037;EUR_AF=0.49;LDAF=0.3224;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0216;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 61734539 rs3821880 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.55;AMR_AF=0.58;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6128;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 62229553 rs1352882 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 62431415 rs6791296 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.73;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8240;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +3 62459819 rs76824303 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=0.9943;ERATE=0.0026;EUR_AF=0.11;LDAF=0.0548;RSQ=0.9604;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 62477933 rs9834224 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0503;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 62498378 rs1376917 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.84;AMR_AF=0.83;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8339;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 62556622 rs833663 A G 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.78;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9246;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 62739092 rs478123 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.89;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=0.9835;ERATE=0.0074;EUR_AF=0.89;LDAF=0.8690;RSQ=0.9494;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 63595036 rs147416129 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0128;RSQ=0.9531;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-1.25,-0.02,-5.00 +3 63645575 rs34568643 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.23;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1691;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 63967900 rs1053338 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.18;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1278;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 63976489 rs74823804 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9980;ERATE=0.0003;LDAF=0.0235;RSQ=0.9674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 63982082 rs3774729 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.59;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.34;LDAF=0.4371;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 63999312 rs150399340 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 64004728 rs147177356 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 64133350 rs27673 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0011;EUR_AF=1.00;LDAF=0.9885;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 64145759 rs2306380 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3117;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 64518994 rs1017537 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.90;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9597;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 64526942 rs3796383 A C 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.25;AMR_AF=0.58;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.83;LDAF=0.5457;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 64526943 rs3796382 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.14;AMR_AF=0.25;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1289;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 64527321 rs1373163 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.25;AMR_AF=0.57;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.5455;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 64527336 rs1036919 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.23;AMR_AF=0.57;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.5418;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 64532476 rs6787633 G C 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1367;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 64554254 rs7635677 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.94;AMR_AF=0.71;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.7061;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 64641226 rs180962057 A G 100 PASS AA=A;AC=1;AF=0.0046;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0005;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 64672474 rs36115950 A T 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.23;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1212;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 66431943 rs13094825 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.0041;AMR_AF=0.17;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0431;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 66432680 rs332371 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7712;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 66432845 rs9868503 G A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.20;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1610;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 66433676 rs900171 A G 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.74;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6950;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 66444615 rs6793110 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.48;AMR_AF=0.33;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.25;LDAF=0.2617;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 66463251 rs4856924 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.79;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9346;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 66463254 rs12493943 C G 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.23;AMR_AF=0.31;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0020;EUR_AF=0.24;LDAF=0.1998;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +3 66550756 rs1403625 G C 100 PASS AA=g;AC=2;AF=0.76;AFR_AF=0.24;AMR_AF=0.90;AN=2;ASN_AF=0.85;AVGPOST=0.9743;ERATE=0.0011;EUR_AF=0.97;LDAF=0.7596;RSQ=0.9608;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-0.88,-0.39,-0.34 +3 66550762 rs1403626 G C 100 PASS AA=g;AC=2;AF=0.76;AFR_AF=0.24;AMR_AF=0.90;AN=2;ASN_AF=0.85;AVGPOST=0.9760;ERATE=0.0010;EUR_AF=0.97;LDAF=0.7628;RSQ=0.9632;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|1:2.000:-3.05,-0.47,-0.18 +3 67426125 rs1065399 C T 100 PASS AA=c;AC=1;AF=0.68;AFR_AF=0.69;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.69;LDAF=0.6819;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 68788363 rs1504301 G T 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6596;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 69036683 rs4855541 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4079;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 69036707 rs4855542 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.51;AMR_AF=0.44;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.45;LDAF=0.3766;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 69047141 rs4855544 G A 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3241;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 69054341 rs6781612 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.36;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3565;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 69058783 rs56761230 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.27;LDAF=0.3192;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 69082657 rs937859 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.29;AN=2;ASN_AF=0.40;AVGPOST=0.9986;ERATE=0.0012;EUR_AF=0.36;LDAF=0.3110;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 69084161 rs2271121 C A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.25;AMR_AF=0.28;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3213;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 69093598 rs2271118 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.85;AMR_AF=0.87;AN=2;ASN_AF=0.66;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7852;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69096614 rs2292199 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.80;AMR_AF=0.86;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7701;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69104695 rs6549179 T A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=0.90;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9601;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69230026 rs9818314 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.74;AMR_AF=0.99;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9209;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69230061 rs9831516 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.90;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8043;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69230801 rs9836305 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.90;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8044;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69244162 rs9853587 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.45;AMR_AF=0.89;AN=2;ASN_AF=0.62;AVGPOST=0.9984;ERATE=0.0011;EUR_AF=0.99;LDAF=0.7532;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69245454 rs9310141 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9698;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69246152 rs13059488 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.58;AMR_AF=0.93;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.95;LDAF=0.7838;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 69265371 rs62254460 G C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.61;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8484;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-3.40,-0.00,-5.00 +3 69267578 rs4855301 A T 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.61;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8474;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 69362706 rs1483895 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.38;AMR_AF=0.75;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6616;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 71015021 rs7638391 G T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9612;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0091;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 71247064 rs141808088 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=0.9991;ERATE=0.0019;LDAF=0.0082;RSQ=0.9580;SNPSOURCE=LOWCOV,EXOME;THETA=0.0127;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 71247572 rs56850311 A T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.40;AMR_AF=0.30;AN=2;ASN_AF=0.10;AVGPOST=0.9946;ERATE=0.0005;EUR_AF=0.26;LDAF=0.2569;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 71745688 rs9877458 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.17;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0718;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 73024350 rs1052278 C A 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.51;AMR_AF=0.64;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5583;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 73114003 rs61188513 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.15;AMR_AF=0.10;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1897;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 73434086 rs6787588 A G 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.42;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=0.9985;ERATE=0.0018;EUR_AF=0.30;LDAF=0.3322;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.58,-0.00 +3 73437112 rs6549532 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.92;AMR_AF=0.74;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7966;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 73450198 rs3816831 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1129;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 73453325 rs2291463 C T 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.50;AMR_AF=0.62;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6403;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 73651469 rs6797804 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.85;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7103;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 74349062 rs626578 T C 100 PASS AA=T;AC=2;AF=0.12;AFR_AF=0.10;AMR_AF=0.07;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1193;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 74350997 rs475988 T C 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.51;AMR_AF=0.38;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.4503;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 74413676 rs6549590 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.28;AMR_AF=0.52;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4533;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 74413784 rs9859540 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0201;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 74420315 rs9310294 G A 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0286;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 87295049 rs11540913 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.55;AMR_AF=0.93;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8403;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 88188420 rs9813894 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.59;AMR_AF=0.87;AN=2;ASN_AF=0.86;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.83;LDAF=0.7909;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 88189341 rs7653652 T C 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.59;AMR_AF=0.87;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7911;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 88190768 rs7432826 C A 100 PASS AA=a;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9451;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +3 88190809 rs7432838 C T 100 PASS AA=t;AC=2;AF=0.87;AFR_AF=0.80;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8683;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +3 89456555 rs3792572 T A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.64;AMR_AF=0.42;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4118;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 89480265 rs12639506 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1724;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 89521693 rs35124509 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.65;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=0.9993;ERATE=0.0019;EUR_AF=0.39;LDAF=0.4037;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 89521725 rs1054750 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1662;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 93593119 rs6123 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.10;AMR_AF=0.44;AN=2;ASN_AF=0.58;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3957;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.74,-0.00,-5.00 +3 93780109 rs61739170 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.22;LDAF=0.1508;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.22 +3 93813171 rs10934676 C G 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1633;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 96706885 rs185296249 A T 100 PASS AA=a;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0056;RSQ=0.9057;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 97466432 rs79617067 T G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.43;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2527;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 97664725 rs2172257 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5082;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 97673268 rs832079 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 97806616 rs4518168 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.56;AMR_AF=0.53;AN=2;ASN_AF=0.44;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.51;LDAF=0.5088;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 97851998 rs9845327 A C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.84;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9679;ERATE=0.0128;EUR_AF=0.51;LDAF=0.5899;RSQ=0.9586;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.00,-3.28 +3 97852083 rs9826076 C T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.84;AMR_AF=0.54;AN=2;ASN_AF=0.58;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.54;LDAF=0.6159;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +3 97868419 rs4241468 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.70;AMR_AF=0.52;AN=2;ASN_AF=0.58;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.54;LDAF=0.5825;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97868616 rs4379004 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.83;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9793;ERATE=0.0108;EUR_AF=0.51;LDAF=0.5866;RSQ=0.9742;SNPSOURCE=EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97868795 rs4857076 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.84;AMR_AF=0.52;AN=2;ASN_AF=0.56;AVGPOST=0.9895;ERATE=0.0051;EUR_AF=0.53;LDAF=0.6044;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97868970 rs12639519 T A 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.66;AMR_AF=0.52;AN=2;ASN_AF=0.57;AVGPOST=0.9856;ERATE=0.0130;EUR_AF=0.51;LDAF=0.5588;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97887495 rs10212222 C G 100 PASS AA=-;AC=1;AF=0.63;AFR_AF=0.89;AMR_AF=0.54;AN=2;ASN_AF=0.56;AVGPOST=0.9963;ERATE=0.0008;EUR_AF=0.54;LDAF=0.6252;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.81,-0.07,-5.00 +3 97887865 rs4133320 G A 100 PASS AA=-;AC=1;AF=0.58;AFR_AF=0.72;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5833;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97887985 rs4133321 T A 100 PASS AA=-;AC=1;AF=0.57;AFR_AF=0.64;AMR_AF=0.52;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5665;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +3 97888042 rs4133322 A T 100 PASS AA=-;AC=1;AF=0.57;AFR_AF=0.64;AMR_AF=0.52;AN=2;ASN_AF=0.56;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5662;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.12,-0.62,-4.00 +3 97888197 rs7623031 C T 100 PASS AA=-;AC=1;AF=0.62;AFR_AF=0.85;AMR_AF=0.53;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6155;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +3 97983257 rs2132894 C G 100 PASS AA=-;AC=1;AF=0.72;AFR_AF=0.89;AMR_AF=0.59;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7153;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97983561 rs9289564 G C 100 PASS AA=-;AC=1;AF=0.71;AFR_AF=0.88;AMR_AF=0.59;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7140;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97983711 rs9853887 T C 100 PASS AA=-;AC=1;AF=0.64;AFR_AF=0.59;AMR_AF=0.57;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6414;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97983942 rs9853906 A G 100 PASS AA=-;AC=1;AF=0.68;AFR_AF=0.76;AMR_AF=0.59;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6851;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 97983981 rs9871143 G A 100 PASS AA=-;AC=1;AF=0.33;AFR_AF=0.24;AMR_AF=0.36;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3323;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.79 +3 98073313 rs9822460 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.24;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2043;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 98109489 rs13069360 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.30;AMR_AF=0.15;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2237;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 98109640 rs13068323 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1655;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 98217178 rs55639376 T A 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1275;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 98304467 rs1729995 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.89;AMR_AF=0.72;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7623;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 98541116 rs828616 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.10;AMR_AF=0.51;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4127;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 98541633 rs828618 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.02;AMR_AF=0.35;AN=2;ASN_AF=0.42;AVGPOST=0.9952;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2748;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +3 99536937 rs1718240 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.03;AMR_AF=0.42;AN=2;ASN_AF=0.50;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3535;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 100015146 rs3772698 G T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.37;AMR_AF=0.64;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5393;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 100015166 rs3772697 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.27;LDAF=0.2923;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 100086861 rs277640 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.92;AMR_AF=0.69;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7998;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 100170825 rs6797397 G A 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.49;AMR_AF=0.51;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5375;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 100174722 rs1132022 G A 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.38;AMR_AF=0.49;AN=2;ASN_AF=0.74;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5122;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 100277476 rs7645690 G C 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4015;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 100287764 rs28722928 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.34;AMR_AF=0.26;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2491;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 100295733 rs7427360 A G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.81;AMR_AF=0.44;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5023;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 100354683 rs1520652 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.49;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7212;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 100368546 rs61730367 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1298;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 100368692 rs1144118 A G 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.54;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8875;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +3 100374073 rs12636989 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1326;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 100374740 rs9866111 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.22;AMR_AF=0.61;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4465;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 100438784 rs1503838 A G 100 PASS AA=A;AC=2;AF=0.31;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.47;AVGPOST=0.9947;ERATE=0.0022;EUR_AF=0.26;LDAF=0.3056;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +3 100467018 rs11353 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.63;AMR_AF=0.81;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6604;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 100605206 rs1987384 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.48;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7613;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 100617680 rs2245370 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.81;AMR_AF=0.65;AN=2;ASN_AF=0.94;AVGPOST=0.9855;ERATE=0.0235;EUR_AF=0.61;LDAF=0.7488;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 100621426 rs2576365 C A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.82;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.84;LDAF=0.8833;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 100949842 rs348867 G A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.83;AMR_AF=0.82;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8163;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 101039107 rs573908 A C 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.50;AMR_AF=0.82;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7560;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 101046671 rs9849770 C A 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.53;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4410;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 101080694 rs7616677 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.53;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4423;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 101085413 rs939443 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.53;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4417;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 101219889 rs7621830 G C 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.33;AMR_AF=0.53;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4411;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 101231921 rs9682313 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.32;AMR_AF=0.58;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4602;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 101283792 rs3762735 C G 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1289;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 101370551 rs78127229 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0814;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 101404813 rs2303473 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.42;LDAF=0.3411;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 101484335 rs2625282 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.87;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9241;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 101571550 rs587555 A G 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.37;AMR_AF=0.69;AN=2;ASN_AF=0.47;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5486;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 101576175 rs14134 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.51;AMR_AF=0.67;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.63;LDAF=0.5663;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 102176634 rs72942858 G A 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 102187979 rs58997897 G A 100 PASS AA=G;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 105238901 rs2291376 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.43;AMR_AF=0.47;AN=2;ASN_AF=0.48;AVGPOST=0.9981;ERATE=0.0030;EUR_AF=0.37;LDAF=0.4289;RSQ=0.9972;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 105253475 rs6437601 A C 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0836;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 105258861 rs1044240 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0836;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 105260520 rs1044243 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 105260596 rs599278 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 105264025 rs72989914 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 105266331 rs9855810 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 105422844 rs2305037 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.72;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7244;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 105453034 rs6768096 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 105495432 rs9809911 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 107096547 rs709564 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.31;AMR_AF=0.45;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4657;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 107447857 rs3761963 T A 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.19;AMR_AF=0.42;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0014;EUR_AF=0.38;LDAF=0.4888;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 107451907 rs4855764 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +3 107938240 rs1289754 G C 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.70;AMR_AF=0.77;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.6774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 107941163 rs192053464 C T 100 PASS AA=C;AC=1;AF=0.0032;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0032;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 108072243 rs6766283 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.17;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.67;LDAF=0.5592;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 108072298 rs6779254 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5590;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 108081247 rs16854512 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.03;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.18;LDAF=0.1518;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108096098 rs1463426 C G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.85;AMR_AF=0.83;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.93;LDAF=0.6961;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +3 108107925 rs7616341 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.24;AN=2;ASN_AF=0.0035;AVGPOST=0.9986;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2009;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108117694 rs13087507 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.0035;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.1998;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108135680 rs9873504 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.04;LDAF=0.2203;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 108135799 rs11927603 C G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.63;AMR_AF=0.61;AN=2;ASN_AF=0.83;AVGPOST=0.9991;ERATE=0.0027;EUR_AF=0.49;LDAF=0.6280;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 108147295 rs1350235 C A 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.82;AMR_AF=0.80;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.88;LDAF=0.7317;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108147728 rs3900940 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.26;AN=2;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.33;LDAF=0.1842;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108158574 rs3996040 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.75;AMR_AF=0.67;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.84;LDAF=0.6175;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108159977 rs12638212 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.2070;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 108172817 rs6437783 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.74;AMR_AF=0.67;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.84;LDAF=0.5718;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108188993 rs9868484 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.71;AMR_AF=0.63;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.76;LDAF=0.5290;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108195406 rs3996003 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.24;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1847;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108366978 rs2399235 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2189;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 108403086 rs9856097 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 108475974 rs11708527 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.21;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.1618;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108557820 rs7651205 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.11;AMR_AF=0.49;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5146;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 108634973 rs10933973 C A 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2573;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 108639423 rs2715687 C T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.71;AMR_AF=0.64;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.74;LDAF=0.6165;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 108703587 rs2290057 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2834;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108754238 rs4855576 A T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.64;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9031;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 108776343 rs1031252 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.64;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9036;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 108788461 rs2305238 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3963;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 108836832 rs112916758 C T 100 PASS AA=C;AC=1;AF=0.0023;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0022;RSQ=0.9362;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 109027157 rs7611135 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.63;AMR_AF=0.77;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7587;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 109047928 rs1163439 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.22;AMR_AF=0.15;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1358;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 109052732 rs3762648 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4949;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 111286375 rs2276872 G C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.07;AMR_AF=0.06;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0667;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 111356083 rs1533270 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9982;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111637904 rs2399399 G A 100 PASS AA=A;AC=1;AF=0.88;AFR_AF=0.79;AMR_AF=0.89;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8751;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 111658290 rs712509 T G 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.63;AMR_AF=0.49;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.5896;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111658486 rs712510 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111659377 rs698358 T C 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +3 111730591 rs3749311 G T 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.16;AMR_AF=0.53;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.4333;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111766559 rs1688304 T G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.73;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9177;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111785208 rs11715561 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.29;AMR_AF=0.55;AN=2;ASN_AF=0.57;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5254;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 111794246 rs200656460 T G 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.17;AVGPOST=0.9322;ERATE=0.1095;EUR_AF=0.15;LDAF=0.1894;RSQ=0.7981;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 111794365 rs1907639 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.37;AMR_AF=0.55;AN=2;ASN_AF=0.57;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5410;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 111799845 rs340151 A T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.74;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.96;LDAF=0.9117;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111828423 rs340167 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9792;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111828476 rs2120095 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.24;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2655;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.44 +3 111851890 rs879652 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.15;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.3583;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 111918215 rs28516377 C T 100 PASS AA=T;AC=2;AF=0.25;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.28;AVGPOST=0.9929;ERATE=0.0205;EUR_AF=0.19;LDAF=0.2476;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111918216 rs13098660 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.66;AMR_AF=0.78;AN=2;ASN_AF=0.98;AVGPOST=0.9953;ERATE=0.0109;EUR_AF=0.72;LDAF=0.7840;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111921116 rs9288938 C A 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.37;AMR_AF=0.38;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3153;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111921225 rs6781844 G T 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.71;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8094;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111923047 rs4422273 G A 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.71;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8094;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111923123 rs4434123 G A 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.71;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8094;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111962851 rs6768523 T C 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.34;AMR_AF=0.37;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3063;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111981849 rs9860819 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6435;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111981878 rs9809384 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6435;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111981924 rs9809404 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6432;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111983197 rs6788397 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6431;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 111985107 rs9872691 T C 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.35;AMR_AF=0.38;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3108;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111993716 rs6805112 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8208;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111996554 rs9828502 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.32;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2971;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 111996730 rs9809174 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.32;AMR_AF=0.37;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2953;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 112052103 rs2276772 G T 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.27;AN=2;ASN_AF=0.13;AVGPOST=0.9967;ERATE=0.0005;EUR_AF=0.40;LDAF=0.2490;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.100:-3.15,-0.48,-0.18 +3 112059768 rs1131199 C G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.76;AMR_AF=0.54;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.51;LDAF=0.6257;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112063850 rs2272022 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2372;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112184927 rs2171513 A G 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.26;AMR_AF=0.82;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.7418;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 112185025 rs9288952 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.17;AMR_AF=0.75;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.6911;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112190137 rs2931761 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9904;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 112256630 rs2969896 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.45;AMR_AF=0.11;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1742;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112267523 rs9809247 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.30;AMR_AF=0.76;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7157;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112289372 rs9869579 G A 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.30;AMR_AF=0.75;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7130;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112299732 rs2292442 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.46;AMR_AF=0.11;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1764;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112546473 rs1997281 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3327;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112642568 rs9865242 C G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.70;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6288;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112647613 rs1466872 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.73;AMR_AF=0.63;AN=2;ASN_AF=0.69;AVGPOST=0.9902;ERATE=0.0078;EUR_AF=0.56;LDAF=0.6423;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112647832 rs9826308 A C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.70;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6289;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112647988 rs9868053 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.70;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6287;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112648125 rs6438117 G T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.68;AMR_AF=0.60;AN=2;ASN_AF=0.68;AVGPOST=0.9923;ERATE=0.0120;EUR_AF=0.53;LDAF=0.6159;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112648127 rs4596117 T G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.70;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6288;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112648222 rs2171509 T C 100 PASS AA=t;AC=1;AF=0.63;AFR_AF=0.70;AMR_AF=0.61;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6289;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 112693753 rs62263759 A T 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.04;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.31;LDAF=0.1554;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112709828 rs2272393 C G 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.17;AMR_AF=0.70;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.73;LDAF=0.4964;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +3 112727184 rs2306857 A T 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.22;AMR_AF=0.73;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.76;LDAF=0.5280;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 112991312 rs3814398 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.20;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0039;EUR_AF=0.19;LDAF=0.2683;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112991959 rs11710894 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.21;AMR_AF=0.33;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2802;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112993456 rs141826592 A T 100 PASS AA=A;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0013;RSQ=0.9689;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.900:-5.00,0.00,-5.00 +3 112997554 rs775228 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.73;AMR_AF=0.50;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.50;LDAF=0.6046;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112998090 rs3856720 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.09;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.20;LDAF=0.2521;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 112998265 rs2649878 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.79;AMR_AF=0.41;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.5279;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113003595 rs775222 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.20;LDAF=0.2523;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113005754 rs5022662 A T 100 PASS AA=a;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.35;AN=2;ASN_AF=0.47;AVGPOST=0.9434;ERATE=0.0782;EUR_AF=0.30;LDAF=0.3429;RSQ=0.8894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113119440 rs140356033 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0019;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 113128051 rs13059888 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.10;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0636;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 113135345 rs12635786 A C 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3081;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113145006 rs73239107 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2217;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113146130 rs59722850 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0014;EUR_AF=0.25;LDAF=0.2747;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113164109 rs2054823 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.72;AMR_AF=0.42;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5708;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113207758 rs7625841 G A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.72;AMR_AF=0.42;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5708;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113251962 rs61738949 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=0.8575;ERATE=0.0778;EUR_AF=0.18;LDAF=0.1815;RSQ=0.5843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-3.40,-0.00,-5.00 +3 113285423 rs2271495 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.19;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2811;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 113286405 rs2292511 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.28;AMR_AF=0.23;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3364;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 113300183 rs2271494 A T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.52;AMR_AF=0.36;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5367;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 113320477 rs33990195 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0558;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113323787 rs3732797 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0555;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113373930 rs930818 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 113377361 rs9813630 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.28;AN=2;ASN_AF=0.23;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.39;LDAF=0.3468;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113377505 rs16861271 T G 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.32;AVGPOST=0.9976;ERATE=0.0015;EUR_AF=0.08;LDAF=0.1383;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 113379865 rs9866806 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.38;LDAF=0.2581;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113522544 rs13321446 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.41;AMR_AF=0.25;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3730;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113594377 rs13079383 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.09;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2876;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 113595156 rs2712350 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 113619872 rs2632244 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 113858350 rs2251177 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 113890815 rs6280 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.18;AMR_AF=0.61;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5485;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-4.10 +3 113955164 rs3732782 T G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.86;AMR_AF=0.59;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6773;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 113955265 rs6438190 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.86;AMR_AF=0.59;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6769;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 113955320 rs6438191 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.86;AMR_AF=0.59;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6769;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 113955820 rs3732780 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3222;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 115571364 rs3821560 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1216;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 118649060 rs2903250 G T 100 PASS AA=T;AC=1;AF=0.84;AFR_AF=0.99;AMR_AF=0.87;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0016;EUR_AF=0.77;LDAF=0.8439;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 118865801 rs4077931 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.21;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2203;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 118866376 rs56317615 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2207;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 118867047 rs9289122 C G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.4964;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 118909159 rs9840317 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.89;AMR_AF=0.94;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9379;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 118909962 rs3796356 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.78;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9099;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 118909987 rs3796357 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.78;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9100;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 118931389 rs6784208 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.84;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9173;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 118948716 rs4422294 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.05;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2313;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119118104 rs4688001 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119128628 rs1463139 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.74;AMR_AF=0.64;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6255;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119128634 rs1463138 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.33;AMR_AF=0.51;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4678;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119133183 rs3732413 G A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.93;AMR_AF=0.75;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8308;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119133554 rs61740281 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1198;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119171280 rs1919586 C G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8094;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119196334 rs3732419 G T 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.72;AMR_AF=0.49;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.54;LDAF=0.6222;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119198873 rs4688007 G A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=0.87;AMR_AF=0.75;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8158;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119367390 rs2688643 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9616;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119373315 rs2688629 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.36;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.64;LDAF=0.5823;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119426307 rs9848716 T C 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.18;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6106;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119434527 rs6438544 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.68;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9251;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119533910 rs4058490 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119886548 rs9858566 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9150;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119886776 rs902790 T A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9150;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119892121 rs13064815 C G 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.18;AMR_AF=0.35;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.2409;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 119904125 rs902791 A G 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9150;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 119905641 rs2319542 G A 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9150;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 120068022 rs6770482 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.09;AVGPOST=0.9836;ERATE=0.0024;EUR_AF=0.07;LDAF=0.1773;RSQ=0.9597;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.55,-0.14 +3 120130874 rs185906368 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0432;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 120134883 rs2272515 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.40;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.2655;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 120169641 rs1147708 T C 100 PASS AA=t;AC=1;AF=0.86;AFR_AF=0.78;AMR_AF=0.76;AN=2;ASN_AF=0.85;AVGPOST=0.9745;ERATE=0.0033;EUR_AF=0.97;LDAF=0.8548;RSQ=0.9264;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.35,-0.01,-1.67 +3 120369575 rs3817627 T G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.32;AMR_AF=0.62;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.64;LDAF=0.6070;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 120371414 rs2551607 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.58;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.92;LDAF=0.8602;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 120389316 rs2255543 T A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.80;AMR_AF=0.81;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.75;LDAF=0.7378;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 120394604 rs2733825 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 120500093 rs3732401 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.29;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1929;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121100283 rs17740066 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0706;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121137976 rs6782025 C T 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.68;AMR_AF=0.73;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7663;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121151812 rs3218634 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.25;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0937;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121186422 rs532411 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.25;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121186451 rs532326 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0101;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121206542 rs200881849 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121228960 rs487848 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.25;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0937;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121238749 rs702018 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 121263720 rs702017 C A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9908;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 121304933 rs9813391 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.13;AMR_AF=0.39;AN=2;ASN_AF=0.05;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2015;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121340536 rs4676684 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.41;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4051;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121350966 rs9869984 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 121353254 rs2070179 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.55;AMR_AF=0.52;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6920;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121361787 rs2070178 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2213;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121366123 rs9818402 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2211;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121412892 rs11915822 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0978;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121414217 rs35674179 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0978;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121418765 rs11927625 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2400;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121435621 rs9832267 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6947;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121435624 rs9812411 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.56;AMR_AF=0.51;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6956;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121500699 rs17849995 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.26;AMR_AF=0.47;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2619;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121517997 rs12492214 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0759;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121526204 rs4543051 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.76;AMR_AF=0.67;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5714;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 121563271 rs11717089 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.37;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=0.9916;ERATE=0.0199;EUR_AF=0.31;LDAF=0.2622;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 121631841 rs1523519 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2587;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121643163 rs2293611 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2582;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121659197 rs3817599 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.67;AMR_AF=0.69;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7605;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 121825197 rs2681417 G A 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.65;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0034;EUR_AF=0.93;LDAF=0.8862;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 121976253 rs9869985 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.96;LDAF=0.9218;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 121981215 rs12493789 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0229;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 122003045 rs2036400 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9749;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 122003832 rs1801726 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9228;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 122056432 rs17589 C T 100 PASS AA=C;AC=2;AF=0.40;AFR_AF=0.40;AMR_AF=0.55;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.58;LDAF=0.3999;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 122133830 rs3749213 T G 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2116;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122145810 rs4677950 T A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 122186188 rs4678193 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 122247606 rs7628052 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2106;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122259606 rs9851180 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5360;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122274757 rs73192127 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2093;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122287289 rs9839782 T C 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.36;AMR_AF=0.33;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3379;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +3 122288210 rs2332285 G A 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5682;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 122290579 rs2036342 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.25;AMR_AF=0.30;AN=2;ASN_AF=0.41;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.32;LDAF=0.3239;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 122354037 rs1106346 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3816;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122354052 rs1106345 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2472;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122354792 rs12489170 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.10;AMR_AF=0.23;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2339;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122437321 rs7645033 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9064;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 122437834 rs3821688 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.30;AMR_AF=0.42;AN=2;ASN_AF=0.30;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4002;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122474305 rs6794019 C A 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.35;AMR_AF=0.54;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4910;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +3 122630323 rs2303982 T G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.54;AMR_AF=0.67;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.5978;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122630346 rs2303983 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.53;AMR_AF=0.67;AN=2;ASN_AF=0.34;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.79;LDAF=0.5985;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122631896 rs2276782 A T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.34;AVGPOST=0.9951;ERATE=0.0007;EUR_AF=0.80;LDAF=0.5898;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.51,-0.16 +3 122642415 rs2276779 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.20;AMR_AF=0.49;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4319;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 122642590 rs2276778 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.20;AMR_AF=0.49;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4328;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 123015094 rs9882534 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 123018963 rs4482616 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.78;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8086;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 123021870 rs9844212 G C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.50;AMR_AF=0.49;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4642;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 123047666 rs9855969 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.90;AMR_AF=0.81;AN=2;ASN_AF=0.96;AVGPOST=0.9957;ERATE=0.0062;EUR_AF=0.80;LDAF=0.8617;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 123167249 rs4678027 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9721;ERATE=0.0029;EUR_AF=0.99;LDAF=0.9654;RSQ=0.6928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-3.11,-0.47,-0.18 +3 123303821 rs1271004 G C 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.43;AMR_AF=0.34;AN=2;ASN_AF=0.64;AVGPOST=0.9445;ERATE=0.0058;EUR_AF=0.19;LDAF=0.3854;RSQ=0.9153;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +3 123357037 rs820463 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.3514;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 123357062 rs820464 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.3514;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 123368013 rs1254392 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.56;AMR_AF=0.28;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.10;LDAF=0.3814;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 123411589 rs40305 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.08;AMR_AF=0.52;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.3821;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 123418913 rs865358 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9502;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 123440967 rs820355 G A 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.70;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9269;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.39,-0.00 +3 123451773 rs9833275 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9990;RSQ=0.9359;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 123452838 rs4678047 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.37;AMR_AF=0.71;AN=2;ASN_AF=0.96;AVGPOST=0.9920;ERATE=0.0085;EUR_AF=0.64;LDAF=0.6726;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0100;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 123456432 rs2168439 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9406;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 123457711 rs2198766 C A 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9385;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +3 123457893 rs9840993 G A 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.59;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8812;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +3 123633612 rs11551801 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.20;AMR_AF=0.54;AN=2;ASN_AF=0.09;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.66;LDAF=0.3907;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 123634046 rs2700373 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.95;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8381;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 123652476 rs6784695 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.95;AMR_AF=0.88;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8395;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.86,-0.00 +3 123665902 rs17310144 T G 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.47;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.3164;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 123666192 rs17375977 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.17;AMR_AF=0.47;AN=2;ASN_AF=0.08;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.56;LDAF=0.3313;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 123667524 rs4678073 A C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.2267;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 123699299 rs7622201 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.36;AMR_AF=0.11;AN=2;ASN_AF=0.37;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.01;LDAF=0.2001;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 123988039 rs2272486 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.66;AMR_AF=0.64;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.61;LDAF=0.6057;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 124044949 rs2289778 C T 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.51;AMR_AF=0.81;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7638;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124048764 rs2276740 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1190;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 124196094 rs2289843 A T 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2162;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 124303786 rs2250757 G C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.89;AMR_AF=0.53;AN=2;ASN_AF=0.87;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6896;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.68,-0.01,-5.00 +3 124351316 rs1708303 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.7198;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124351424 rs1660038 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.78;AMR_AF=0.64;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.7226;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124379748 rs333290 G C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.81;AMR_AF=0.52;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6074;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124379817 rs333289 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.52;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6028;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124380793 rs665927 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.50;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2793;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124412634 rs333283 G T 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.81;AMR_AF=0.69;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.63;LDAF=0.7536;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124418846 rs2289427 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1664;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124436262 rs145268246 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.03;AVGPOST=0.9994;ERATE=0.0040;EUR_AF=0.01;LDAF=0.0134;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0114;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 124449291 rs1139538 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.34;AMR_AF=0.66;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5526;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124449406 rs17843776 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 124692689 rs2270778 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.88;AMR_AF=0.60;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7043;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 124692785 rs2270779 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.88;AMR_AF=0.60;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7043;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 124728626 rs6438869 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.56;AMR_AF=0.75;AN=2;ASN_AF=0.61;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.67;LDAF=0.6433;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124731485 rs10804567 C G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.65;AMR_AF=0.68;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7258;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124732618 rs6790837 A G 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0016;EUR_AF=0.55;LDAF=0.4435;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124732842 rs6438871 C A 100 PASS AA=c;AC=2;AF=0.72;AFR_AF=0.63;AMR_AF=0.67;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7160;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124738107 rs59232004 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.38;AMR_AF=0.46;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4886;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124739892 rs6438874 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.43;AMR_AF=0.48;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5015;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124746049 rs2981546 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.36;AMR_AF=0.47;AN=2;ASN_AF=0.49;AVGPOST=0.9895;ERATE=0.0093;EUR_AF=0.55;LDAF=0.4734;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124746182 rs2333041 C A 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.45;AMR_AF=0.48;AN=2;ASN_AF=0.50;AVGPOST=0.9982;ERATE=0.0008;EUR_AF=0.56;LDAF=0.5078;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124746347 rs4404487 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.77;AMR_AF=0.67;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7340;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124748226 rs2860440 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.37;AMR_AF=0.47;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4877;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124802881 rs2981483 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.79;AMR_AF=0.56;AN=2;ASN_AF=0.56;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6074;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124802888 rs2981482 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.79;AMR_AF=0.56;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.55;LDAF=0.6075;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 124837684 rs621383 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.8054;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 124839470 rs863642 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9846;RSQ=0.9832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 124896861 rs545103 C G 100 PASS AA=N;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9670;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +3 124909178 rs4679159 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.11;AN=2;ASN_AF=0.11;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.08;LDAF=0.1016;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 124951821 rs1053738 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.88;AMR_AF=0.64;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6961;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 125223456 rs2076724 C T 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.67;AMR_AF=0.55;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4960;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 125301711 rs2979382 C G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.83;AMR_AF=0.56;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5343;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 125769757 rs4077563 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.26;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3771;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 125775228 rs7613944 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9946;ERATE=0.0016;EUR_AF=1.00;LDAF=0.9910;RSQ=0.7810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 125775321 rs58595496 G C 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0723;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 125775428 rs6438964 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.59;AMR_AF=0.69;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6513;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 125786760 rs4308226 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6476;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 125786852 rs11543283 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0800;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 125786879 rs4234270 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 125874388 rs2276731 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.85;AMR_AF=0.77;AN=2;ASN_AF=0.74;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7948;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 126132880 rs4679240 G A 100 PASS AA=g;AC=1;AF=0.07;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0663;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126132999 rs75744986 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.0026;LDAF=0.0220;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 126135365 rs6439010 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.36;AMR_AF=0.23;AN=2;ASN_AF=0.11;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.20;LDAF=0.2192;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126137558 rs4679242 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.36;AMR_AF=0.24;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2182;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +3 126138778 rs2271630 T C 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.88;AMR_AF=0.85;AN=2;ASN_AF=0.58;AVGPOST=0.9954;ERATE=0.0004;EUR_AF=0.93;LDAF=0.8154;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +3 126138889 rs1877967 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.49;AMR_AF=0.25;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2489;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126181071 rs6775965 A C 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2378;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 126194076 rs812367 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.59;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.68;LDAF=0.5577;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126202257 rs1687477 G A 100 PASS AA=g;AC=1;AF=0.44;AFR_AF=0.20;AMR_AF=0.49;AN=2;ASN_AF=0.50;AVGPOST=0.9986;ERATE=0.0012;EUR_AF=0.53;LDAF=0.4435;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126208249 rs777479 A C 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.22;AMR_AF=0.52;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5046;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126211282 rs777474 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0096;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126218167 rs1168595 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.17;AMR_AF=0.34;AN=2;ASN_AF=0.27;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2711;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126219030 rs13072404 T C 100 PASS AA=t;AC=1;AF=0.53;AFR_AF=0.47;AMR_AF=0.51;AN=2;ASN_AF=0.56;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5290;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 126222856 rs139894266 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 126229473 rs78041432 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.08;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0827;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126260608 rs6766712 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.23;AMR_AF=0.30;AN=2;ASN_AF=0.26;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.26;LDAF=0.2611;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.06,-0.89,-5.00 +3 126260995 rs7614066 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.15;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9975;ERATE=0.0007;EUR_AF=0.02;LDAF=0.0452;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +3 126261202 rs1056524 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.47;AMR_AF=0.35;AN=2;ASN_AF=0.26;AVGPOST=0.9953;ERATE=0.0009;EUR_AF=0.30;LDAF=0.3384;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +3 126261207 rs1056523 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.26;AVGPOST=0.9962;ERATE=0.0006;EUR_AF=0.26;LDAF=0.2134;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.06,-0.87,-5.00 +3 126261345 rs1056522 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.47;AMR_AF=0.35;AN=2;ASN_AF=0.26;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.30;LDAF=0.3388;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +3 126268918 rs869463 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2102;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 126270923 rs34760151 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.29;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0813;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 126451937 rs2272487 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.26;AMR_AF=0.27;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2317;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 127295759 rs2289185 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.14;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0694;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 127323830 rs893293 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.50;AMR_AF=0.61;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6534;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 127336934 rs782427 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.97;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8012;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 127379270 rs920232 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1608;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 127394820 rs35703629 C T 100 PASS AA=c;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1261;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 127641968 rs4141499 C A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9985;ERATE=0.0006;EUR_AF=0.58;LDAF=0.6400;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 127703085 rs13100951 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.16;AMR_AF=0.33;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2670;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 127703144 rs34959313 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 127779306 rs2304018 G A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.23;AMR_AF=0.18;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1883;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 127783698 rs1044843 A T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.23;AMR_AF=0.18;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1883;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 127800071 rs1057156 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.23;AMR_AF=0.18;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1883;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 127872506 rs11711710 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.24;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.11;LDAF=0.1176;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +3 127872602 rs11719546 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.24;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9983;ERATE=0.0006;EUR_AF=0.11;LDAF=0.1174;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.79,-0.01,-1.97 +3 127983495 rs2811544 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.68;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8656;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 128181537 rs2953129 C T 100 PASS AA=C;AC=2;AF=0.22;AFR_AF=0.02;AMR_AF=0.26;AN=2;ASN_AF=0.43;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.18;LDAF=0.2234;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 128182074 rs2981026 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.16;AMR_AF=0.38;AN=2;ASN_AF=0.52;AVGPOST=0.9972;ERATE=0.0028;EUR_AF=0.26;LDAF=0.3253;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 128205860 rs1573858 G C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.66;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.64;LDAF=0.6871;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.22 +3 128292213 rs2734046 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8327;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 128356852 rs1697 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.60;AMR_AF=0.59;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6549;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 128614133 rs1683791 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.93;AMR_AF=0.61;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6362;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +3 128614185 rs1680778 A C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.83;AMR_AF=0.45;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.5224;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 128890350 rs4303883 G A 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.41;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8131;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 128971113 rs4927953 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.57;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2079;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 128976396 rs4927910 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.57;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2106;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 128976451 rs62266876 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0535;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 128976729 rs114007375 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0142;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 128979256 rs6802965 C G 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.55;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2038;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 128987730 rs10934875 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.62;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2262;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 129020778 rs6765930 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.90;AMR_AF=0.81;AN=2;ASN_AF=0.73;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8090;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 129034758 rs6795995 A G 100 PASS AA=a;AC=1;AF=0.20;AFR_AF=0.59;AMR_AF=0.18;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1955;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.06,-0.88 +3 129279597 rs2713627 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 129281980 rs2713625 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 129293183 rs2625962 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9928;RSQ=0.9684;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +3 129303197 rs2811463 T C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9906;RSQ=0.9720;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 129324193 rs7619850 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9682;ERATE=0.0024;EUR_AF=0.99;LDAF=0.9626;RSQ=0.6661;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:1.950:-0.89,-0.39,-0.33 +3 129694681 rs5658 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.22;AMR_AF=0.27;AN=2;ASN_AF=0.36;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.09;LDAF=0.2179;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 129695538 rs784704 C T 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9561;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 129695714 rs5660 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0731;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 129695954 rs5662 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9562;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 129696041 rs5663 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9570;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +3 129696105 rs5664 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0731;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.85 +3 130284284 rs9830253 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.18;AMR_AF=0.77;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.84;LDAF=0.5804;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 130286886 rs9836961 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.80;AN=2;ASN_AF=0.46;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.84;LDAF=0.6357;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 130289617 rs10934949 T C 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.56;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.98;LDAF=0.8615;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 130300650 rs6439249 T C 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.34;AMR_AF=0.80;AN=2;ASN_AF=0.46;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.88;LDAF=0.6327;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 130311398 rs73868925 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.21;AMR_AF=0.11;AN=2;ASN_AF=0.21;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.09;LDAF=0.1500;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 130368069 rs7614116 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.59;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.30;LDAF=0.5170;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.96 +3 130383973 rs59386806 G A 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.34;AMR_AF=0.32;AN=2;ASN_AF=0.27;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2717;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +3 130424390 rs75791598 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.30;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2194;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 130424393 rs7652761 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.70;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.21;LDAF=0.3999;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 130424650 rs4682629 G A 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.0041;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0969;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 130449222 rs2170990 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2052;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 130748733 rs9864242 A G 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.03;AMR_AF=0.38;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0024;EUR_AF=0.40;LDAF=0.2749;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 130828790 rs9850655 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.27;AMR_AF=0.48;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.56;LDAF=0.4109;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 130881409 rs1913898 T C 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.11;AMR_AF=0.46;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.56;LDAF=0.3721;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 130947435 rs3738000 A T 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.18;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.4831;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 131415340 rs2369134 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.31;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2470;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 132063914 rs972774 A T 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.37;AMR_AF=0.52;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4122;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 132068831 rs2228402 C T 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.35;AMR_AF=0.50;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 132068876 rs2290542 G A 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.35;AMR_AF=0.50;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3707;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +3 132075554 rs3181784 T C 100 PASS AA=T;AC=2;AF=0.28;AFR_AF=0.32;AMR_AF=0.39;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2821;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 132075707 rs2071505 A G 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.35;AMR_AF=0.50;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3699;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 132075746 rs1042330 G A 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.32;AMR_AF=0.47;AN=2;ASN_AF=0.09;AVGPOST=0.9883;ERATE=0.0066;EUR_AF=0.49;LDAF=0.3442;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 132235344 rs80120242 A T 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0238;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 132360883 rs821572 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 133099245 rs1197314 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.24;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0035;EUR_AF=0.43;LDAF=0.3909;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133108978 rs1197296 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.08;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3533;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133167363 rs2276737 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.10;AMR_AF=0.42;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4511;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133185834 rs2737717 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.46;AMR_AF=0.40;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4680;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133191453 rs7628499 A G 100 PASS AA=a;AC=1;AF=0.61;AFR_AF=0.38;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=0.72;LDAF=0.6132;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133329943 rs1444601 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.77;AMR_AF=0.62;AN=2;ASN_AF=0.64;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7024;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133335787 rs3732574 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.61;AMR_AF=0.60;AN=2;ASN_AF=0.64;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6623;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133341988 rs10935070 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.26;AN=2;ASN_AF=0.03;AVGPOST=0.9872;ERATE=0.0004;EUR_AF=0.36;LDAF=0.1828;RSQ=0.9714;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133342218 rs4854738 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.13;AN=2;ASN_AF=0.20;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1326;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 133368362 rs3192149 T G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.78;AMR_AF=0.62;AN=2;ASN_AF=0.64;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7140;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133465283 rs1130459 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.63;AMR_AF=0.65;AN=2;ASN_AF=0.75;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6230;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.61,-0.01 +3 133474328 rs12769 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3072;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133483696 rs1880669 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.35;AMR_AF=0.56;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.60;LDAF=0.5168;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133485133 rs2692696 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 133494354 rs1049296 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1485;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 133496032 rs121918677 G A 100 PASS AA=G;AC=1;AF=0.0032;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0032;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 133524717 rs1107413 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.08;AMR_AF=0.24;AN=2;ASN_AF=0.22;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1840;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 133553527 rs2280672 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.51;AMR_AF=0.49;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.63;LDAF=0.5339;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 133692497 rs4634113 A G 100 PASS AA=g;AC=2;AF=0.90;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.9036;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 133698280 rs4640563 C G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.87;AMR_AF=0.91;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.90;LDAF=0.9037;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 133698349 rs10935090 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0015;EUR_AF=0.13;LDAF=0.2434;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0108;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 134077470 rs1353776 C G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.93;AMR_AF=0.66;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7742;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 134080661 rs1077718 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.89;LDAF=0.9327;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.35,-0.00 +3 134225969 rs9827878 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1697;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 134226159 rs6766818 C T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.57;AMR_AF=0.75;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7069;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 134256110 rs114108011 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0146;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 134266148 rs12632372 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 134266321 rs11927068 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.37;AMR_AF=0.25;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2779;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 134270886 rs9821505 A C 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1265;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 134280395 rs6777283 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 134322742 rs2293293 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.52;AMR_AF=0.71;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6960;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 134322814 rs2293294 G C 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.43;AMR_AF=0.27;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2902;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 134323156 rs4955535 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9964;RSQ=0.9088;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 134369716 rs13060869 C A 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.22;AN=2;ASN_AF=0.03;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1730;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 134514579 rs9852662 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9829;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 134967368 rs11717042 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2624;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 135720540 rs9814557 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1381;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 135720673 rs9872542 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1663;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 135720851 rs6779903 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.57;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3417;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 135721036 rs34629706 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0452;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 135722264 rs17197552 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1568;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 135768232 rs67039922 T A 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1495;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 136035737 rs9833162 A G 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.52;AMR_AF=0.23;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2610;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 136088038 rs9860801 G A 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.54;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2719;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 136573289 rs9865545 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.59;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7063;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 136573440 rs9827648 A G 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.60;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7079;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 136574501 rs1052618 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7174;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 136574521 rs1052620 C T 100 PASS AA=C;AC=2;AF=0.09;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0887;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 137787047 rs374045 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.36;AMR_AF=0.75;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.86;LDAF=0.6709;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 137787192 rs446644 T C 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.36;AMR_AF=0.75;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6710;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 138033181 rs9289556 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.56;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.71;LDAF=0.7125;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 138091701 rs1199333 G T 100 PASS AA=T;AC=1;AF=0.89;AFR_AF=0.93;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8866;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 138189031 rs2347469 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.71;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7956;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +3 138244400 rs9878436 C T 100 PASS AA=T;AC=2;AF=0.32;AFR_AF=0.42;AMR_AF=0.35;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3173;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 139098195 rs7649535 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.28;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1148;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 139102120 rs7373302 C A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.39;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7797;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 139173565 rs2233817 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.62;AMR_AF=0.17;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2225;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 139244762 rs6808946 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.28;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0014;EUR_AF=0.05;LDAF=0.1012;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 139257603 rs2071387 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.46;AMR_AF=0.36;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2779;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 140167536 rs2081803 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.99;AMR_AF=0.85;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8331;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 140178485 rs7632885 G A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.60;AMR_AF=0.45;AN=2;ASN_AF=0.51;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.60;LDAF=0.5505;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 140277734 rs72980136 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.21;AMR_AF=0.05;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0851;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 140282084 rs4683509 C G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.38;AMR_AF=0.60;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.4744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 140285115 rs4683510 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.76;AMR_AF=0.74;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.89;LDAF=0.6329;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.55,-0.00,-5.00 +3 140401693 rs698673 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9990;RSQ=0.9135;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 140784929 rs6771494 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.78;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9758;ERATE=0.0021;EUR_AF=0.23;LDAF=0.4132;RSQ=0.9657;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.26,-0.35,-4.22 +3 140785175 rs890529 C A 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.72;AMR_AF=0.34;AN=2;ASN_AF=0.34;AVGPOST=0.9857;ERATE=0.0007;EUR_AF=0.23;LDAF=0.3884;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.74 +3 140998214 rs13087169 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.38;AMR_AF=0.66;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5626;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 141327474 rs295323 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.76;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4612;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 142168331 rs1802904 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.99;AMR_AF=0.83;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 142215178 rs7620648 A C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.90;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9938;ERATE=0.0045;EUR_AF=0.59;LDAF=0.6345;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +3 142222284 rs2227931 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3514;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 142277536 rs2227929 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3492;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 142277575 rs2227930 A T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6179;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 142281612 rs2227928 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.85;AMR_AF=0.55;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6170;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 142408606 rs6793735 G A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.93;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6334;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 142413407 rs6789958 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.96;AMR_AF=0.53;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6746;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 142542449 rs17554211 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.10;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0634;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 142567030 rs3816690 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0529;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 142567327 rs893883 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.62;AMR_AF=0.53;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5563;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 142681249 rs62276870 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 142756907 rs11929440 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.19;AN=2;ASN_AF=0.04;AVGPOST=0.9767;ERATE=0.0263;EUR_AF=0.26;LDAF=0.1545;RSQ=0.9339;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 142773738 rs10935479 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.82;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.62;LDAF=0.6959;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 143567207 rs11714060 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.86;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9524;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 145788467 rs6710 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5210;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 145788803 rs2305274 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5128;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 145820684 rs3762691 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0020;EUR_AF=0.46;LDAF=0.4904;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 145824478 rs9289716 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4918;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 145838895 rs4681297 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.80;AMR_AF=0.74;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7820;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 145917761 rs1061409 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.11;AMR_AF=0.34;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.35;LDAF=0.2569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 145938619 rs3762685 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.37;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3122;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 146243369 rs2688693 G T 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.21;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1693;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 146307635 rs343289 C A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.76;AMR_AF=0.65;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7308;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 146309715 rs862912 A T 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.24;AVGPOST=0.9928;ERATE=0.0005;EUR_AF=0.10;LDAF=0.1220;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 148459395 rs5182 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.14;AMR_AF=0.56;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4739;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148559694 rs141911824 C T 100 PASS AA=C;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 148583371 rs79975401 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148596506 rs111881854 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148597564 rs74621974 C T 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.14;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0356;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148597612 rs12489516 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9671;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 148727133 rs4938 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3103;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148756825 rs6764352 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9909;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 148757909 rs61750365 A G 100 PASS AA=A;AC=1;AF=0.0032;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0032;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148759325 rs2290725 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.30;AMR_AF=0.32;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.32;LDAF=0.3202;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148764090 rs1017489 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.77;AMR_AF=0.39;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4494;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148786108 rs812249 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.88;AMR_AF=0.80;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7715;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 148872987 rs6440589 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.70;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4656;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148885066 rs57192685 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.28;AMR_AF=0.09;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1274;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +3 148885077 rs2681092 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.65;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9945;ERATE=0.0159;EUR_AF=0.39;LDAF=0.4460;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148889840 rs138521782 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0092;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148896430 rs16861582 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.53;AMR_AF=0.24;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3620;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 148916235 rs701753 T A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.64;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9920;ERATE=0.0086;EUR_AF=0.93;LDAF=0.8846;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 149087714 rs6776940 T C 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.96;AMR_AF=0.92;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 149093238 rs4771 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.91;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8867;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 149192676 rs12488126 G A 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.06;AMR_AF=0.39;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2207;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 149678534 rs6768054 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.45;AMR_AF=0.69;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6819;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 150280445 rs1132979 C G 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.18;AMR_AF=0.39;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3647;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 150384807 rs6440691 T G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.96;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9519;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 150421419 rs17281287 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3959;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 150690439 rs3796242 T A 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.12;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1467;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 150845574 rs1897296 C T 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.59;AMR_AF=0.28;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3789;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 150845795 rs7427471 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.38;AMR_AF=0.22;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2592;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 150881774 rs17290219 A C 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0786;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 150932075 rs55936523 T G 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0623;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 151011969 rs1048408 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.45;AMR_AF=0.55;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4712;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 151012497 rs2242353 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.87;AMR_AF=0.85;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7820;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151012896 rs9819885 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.0960;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 151046308 rs1466684 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8720;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151056598 rs6809699 A C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8902;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151056616 rs6785930 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2642;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 151073033 rs7615865 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7847;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 151078216 rs9856118 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.12;AN=2;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.20;LDAF=0.0937;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 151085578 rs3732764 C A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.92;AMR_AF=0.76;AN=2;ASN_AF=0.82;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.64;LDAF=0.7698;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 151090604 rs9855202 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0955;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 151094995 rs73158000 G A 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0955;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 151105992 rs9289837 C T 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0914;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 151112568 rs3732768 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.42;AMR_AF=0.22;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2816;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 151154666 rs2172250 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.86;AMR_AF=0.85;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.85;LDAF=0.8637;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151155620 rs6781302 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.56;AMR_AF=0.64;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6242;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 151155758 rs9864533 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.17;AMR_AF=0.18;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2039;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 151165678 rs9871952 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.85;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7906;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151166422 rs6798252 C T 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7417;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151171439 rs7619322 A C 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.73;AMR_AF=0.70;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.75;LDAF=0.7385;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151171542 rs7621591 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.91;AMR_AF=0.78;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8071;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151463421 rs1972977 G T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.81;AMR_AF=0.65;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0046;EUR_AF=0.67;LDAF=0.6864;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151463493 rs1550964 A G 100 PASS AA=A;AC=2;AF=0.14;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.09;LDAF=0.1349;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151535422 rs2271942 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.79;AMR_AF=0.72;AN=2;ASN_AF=0.56;AVGPOST=0.9963;ERATE=0.0032;EUR_AF=0.78;LDAF=0.7143;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151545601 rs1803155 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.77;AMR_AF=0.72;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7083;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 151545966 rs146887039 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 153202348 rs3732619 G A 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.05;AMR_AF=0.08;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0797;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 153839866 rs12493885 G C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9401;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.39,-0.00 +3 153839959 rs59508481 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.40;AMR_AF=0.54;AN=2;ASN_AF=0.44;AVGPOST=0.9182;ERATE=0.0326;EUR_AF=0.60;LDAF=0.4995;RSQ=0.8877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.74 +3 153839960 rs12497267 T C 100 PASS AA=C;AC=1;AF=0.86;AFR_AF=0.94;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9234;ERATE=0.0214;EUR_AF=0.74;LDAF=0.8435;RSQ=0.8178;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.150:-5.00,-0.00,-2.66 +3 153840162 rs13073165 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=0.9965;ERATE=0.0006;EUR_AF=0.11;LDAF=0.2171;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-0.68,-0.10,-5.00 +3 153840389 rs13096373 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.51;AMR_AF=0.33;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.11;LDAF=0.3324;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 153870511 rs1727956 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.42;AMR_AF=0.58;AN=2;ASN_AF=0.48;AVGPOST=0.9535;ERATE=0.0141;EUR_AF=0.72;LDAF=0.5640;RSQ=0.9366;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.54 +3 153972500 rs355749 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.86;LDAF=0.9414;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 154011573 rs143919087 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +3 154832768 rs79413638 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0151;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 155241740 rs9840234 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.71;AMR_AF=0.76;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.70;LDAF=0.7751;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 155571275 rs3804769 T C 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.08;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0960;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 155628877 rs10936021 T G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.23;AMR_AF=0.25;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2988;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 155639959 rs3772117 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.25;AN=2;ASN_AF=0.37;AVGPOST=0.9978;ERATE=0.0007;EUR_AF=0.32;LDAF=0.2854;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 156009925 rs1551066 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.63;AMR_AF=0.50;AN=2;ASN_AF=0.66;AVGPOST=0.9976;ERATE=0.0194;EUR_AF=0.32;LDAF=0.5078;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 156249214 rs2280031 T C 100 PASS AA=t;AC=1;AF=0.26;AFR_AF=0.27;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2623;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 156262232 rs6792998 C G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.47;AMR_AF=0.25;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3304;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 156266774 rs9296 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.20;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1659;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 156271595 rs2292337 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.23;AMR_AF=0.11;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1974;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 156271608 rs2292338 G A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.11;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1649;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 156421525 rs34277251 G T 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.04;AMR_AF=0.53;AN=2;ASN_AF=0.73;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4372;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-4.10 +3 156877707 rs9814142 A T 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0632;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 156983273 rs3749214 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.49;AMR_AF=0.57;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.34;LDAF=0.4781;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 157004323 rs4680353 A C 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 157154839 rs34655398 T G 100 PASS AA=t;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0151;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 157155314 rs3816527 C A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6923;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 157817748 rs75663704 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0091;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 157820423 rs4462902 C T 100 PASS AA=C;AC=1;AF=0.91;AFR_AF=0.92;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.86;LDAF=0.9136;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.62 +3 158261937 rs9839632 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.11;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0265;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 158320597 rs4875 T C 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5499;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 158320703 rs77911695 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.28;AMR_AF=0.36;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3434;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 158362441 rs1864507 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5522;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +3 158362526 rs1864506 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.65;AMR_AF=0.32;AN=2;ASN_AF=0.16;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3752;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +3 158366900 rs2303909 G A 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5521;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 158384883 rs4680455 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1769;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 158386737 rs1492909 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.62;AMR_AF=0.32;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.3684;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 158388780 rs8455 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.73;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5452;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 158409262 rs1047355 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.62;AMR_AF=0.32;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.3684;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 158428693 rs35475848 C T 100 PASS AA=C;AC=1;AF=0.0046;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0046;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +3 159706982 rs141519443 G C 100 PASS AA=G;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0021;RSQ=0.9023;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 159976271 rs16831149 C T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.52;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1509;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 159986285 rs16831157 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 159997061 rs6778728 T A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.55;AMR_AF=0.21;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2564;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160021681 rs4680576 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.60;AMR_AF=0.46;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4566;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160122340 rs76120291 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0069;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160130110 rs2305407 G A 100 PASS AA=g;AC=1;AF=0.45;AFR_AF=0.57;AMR_AF=0.46;AN=2;ASN_AF=0.24;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4515;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160142618 rs11718121 A C 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.28;AMR_AF=0.40;AN=2;ASN_AF=0.18;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3325;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160144029 rs76309161 A C 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0082;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160149403 rs16831214 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0068;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160156193 rs76926983 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0073;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160395093 rs1879797 A G 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.66;AMR_AF=0.30;AN=2;ASN_AF=0.30;AVGPOST=0.9952;ERATE=0.0049;EUR_AF=0.30;LDAF=0.3778;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160395097 rs79817049 A G 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.14;AMR_AF=0.02;AN=2;AVGPOST=0.9985;ERATE=0.0008;EUR_AF=0.0013;LDAF=0.0357;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160395207 rs146619115 G A 100 PASS AA=G;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0006;LDAF=0.0028;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160679744 rs7629001 A T 100 PASS AA=T;AC=1;AF=0.83;AFR_AF=0.82;AMR_AF=0.83;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8322;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160955879 rs4350933 G T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.73;AMR_AF=0.60;AN=2;ASN_AF=0.92;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6824;RSQ=0.9993;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 160964271 rs73026976 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.34;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.3633;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 160967354 rs4290817 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.51;AMR_AF=0.54;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.5690;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 164699998 rs41273561 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.48;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1764;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164714296 rs78437999 C T 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.16;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1019;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164714532 rs4855271 C T 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.95;AMR_AF=0.85;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.93;LDAF=0.9260;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164724567 rs7618643 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.15;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164730804 rs74648160 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0891;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164772957 rs9290256 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.45;AMR_AF=0.59;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6381;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164773057 rs9290257 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.45;AMR_AF=0.59;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6380;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164777677 rs9290259 T G 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6363;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164781368 rs11718901 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.45;AMR_AF=0.58;AN=2;ASN_AF=0.83;AVGPOST=0.9910;ERATE=0.0015;EUR_AF=0.63;LDAF=0.6325;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164783165 rs9283633 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6362;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 164783260 rs9681508 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.42;AMR_AF=0.38;AN=2;ASN_AF=0.14;AVGPOST=0.9267;ERATE=0.0421;EUR_AF=0.31;LDAF=0.3114;RSQ=0.8574;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.450:-5.00,-0.89,-0.06 +3 164905688 rs17449404 G A 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0823;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 167000256 rs12638625 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3942;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 167023738 rs13096767 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.37;AMR_AF=0.37;AN=2;ASN_AF=0.18;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.41;LDAF=0.3345;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 167034776 rs77679531 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.05;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0184;RSQ=0.9593;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 167034814 rs13068132 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.24;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=0.9982;ERATE=0.0007;EUR_AF=0.41;LDAF=0.3029;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 167051726 rs10936530 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.43;AMR_AF=0.40;AN=2;ASN_AF=0.67;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4563;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 167051769 rs11923054 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.41;LDAF=0.2682;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 167068256 rs4619784 T A 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=0.9991;ERATE=0.0014;EUR_AF=0.40;LDAF=0.2705;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 167077691 rs4257551 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9181;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 167078544 rs9834845 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.38;AMR_AF=0.51;AN=2;ASN_AF=0.84;AVGPOST=0.9836;ERATE=0.0007;EUR_AF=0.44;LDAF=0.5435;RSQ=0.9771;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 167090574 rs140060012 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0005;LDAF=0.0120;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 167159980 rs9810473 A G 100 PASS AA=A;AC=2;AF=0.24;AFR_AF=0.41;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2399;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 167164187 rs2272138 A G 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.42;AMR_AF=0.20;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2408;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 167167186 rs6770577 T A 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3908;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 167184878 rs9841174 T C 100 PASS AA=t;AC=2;AF=0.43;AFR_AF=0.41;AMR_AF=0.40;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4259;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 167217960 rs13061106 C T 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2032;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 167217964 rs13060964 A G 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3656;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 167747659 rs62637708 C G 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.15;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0412;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 169485989 rs35419455 T A 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.13;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0316;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 169486144 rs9822885 A G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.39;AMR_AF=0.36;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4246;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 169492101 rs10936599 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3039;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 169540397 rs1920119 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.64;AMR_AF=0.53;AN=2;ASN_AF=0.76;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5725;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 169550759 rs12486767 G A 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.51;AMR_AF=0.54;AN=2;ASN_AF=0.76;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5391;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 169555273 rs200900869 G T 100 PASS AA=G;AC=1;AF=0.0009;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 169558025 rs3732451 C T 100 PASS AA=c;AC=2;AF=0.54;AFR_AF=0.52;AMR_AF=0.54;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5407;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 169566090 rs9290375 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.52;AMR_AF=0.54;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5411;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 169574465 rs11919269 T G 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.20;AMR_AF=0.38;AN=2;ASN_AF=0.64;AVGPOST=0.9969;ERATE=0.0031;EUR_AF=0.30;LDAF=0.3780;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 169639050 rs61420799 C T 100 PASS AA=c;AC=1;AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0513;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 169656188 rs138055938 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +3 169940416 rs111868479 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.0028;AN=2;AVGPOST=0.9940;ERATE=0.0005;LDAF=0.0169;RSQ=0.8860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +3 169988286 rs56257047 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1041;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 170009601 rs41273585 C T 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.28;AMR_AF=0.02;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0868;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 170078232 rs3772173 C T 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.42;AMR_AF=0.82;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7390;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 170198967 rs1861939 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.23;AMR_AF=0.50;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4628;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 170715830 rs5398 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.61;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3569;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 170723276 rs5406 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.41;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1765;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 170724955 rs5404 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.28;AMR_AF=0.13;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1262;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 170732300 rs5400 G A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.46;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 170825905 rs6444960 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9892;RSQ=0.9636;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +3 170885097 rs2292005 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.58;AN=2;ASN_AF=0.83;AVGPOST=0.9966;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5915;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 170893070 rs12637875 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.30;AMR_AF=0.60;AN=2;ASN_AF=0.86;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5968;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 171338237 rs9881788 T G 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.78;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4730;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 171362785 rs2287579 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0151;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 171395468 rs2124147 A G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.78;AMR_AF=0.42;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4602;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 171404478 rs2290480 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1494;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 171405384 rs2305547 A T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.66;AMR_AF=0.40;AN=2;ASN_AF=0.28;AVGPOST=0.9861;ERATE=0.0185;EUR_AF=0.37;LDAF=0.4185;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.87,-0.00 +3 171405424 rs2305548 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.61;AMR_AF=0.41;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4191;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 171452645 rs9869368 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.10;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1243;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 171969077 rs7652177 C G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.91;AMR_AF=0.58;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0019;EUR_AF=0.51;LDAF=0.6122;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 171969228 rs35366330 T C 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.17;AMR_AF=0.03;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0469;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 172046861 rs2270568 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.73;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.45;LDAF=0.5361;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 172064091 rs583550 G A 100 PASS AA=g;AC=1;AF=0.41;AFR_AF=0.29;AMR_AF=0.48;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4117;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 172165727 rs572169 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2714;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 172166033 rs495225 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.38;AMR_AF=0.67;AN=2;ASN_AF=0.64;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6053;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 172365832 rs2302815 T G 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=0.9971;ERATE=0.0031;EUR_AF=0.11;LDAF=0.1257;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 172428782 rs2276805 T C 100 PASS AA=N;AC=2;AF=0.60;AFR_AF=0.19;AMR_AF=0.74;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6033;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 172520818 rs7644191 G C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.71;AMR_AF=0.93;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8693;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 172835082 rs16846616 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1513;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 172835125 rs1515442 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.68;AMR_AF=0.30;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3962;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 172835290 rs1515441 C T 100 PASS AA=c;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.16;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1676;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 173997153 rs7646919 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.24;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 174814920 rs9836841 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.30;AMR_AF=0.48;AN=2;ASN_AF=0.41;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4045;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 174951756 rs4371530 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.60;AMR_AF=0.59;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6516;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 174974177 rs13072102 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.36;AVGPOST=0.9967;ERATE=0.0006;EUR_AF=0.35;LDAF=0.2597;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 175165079 rs6802937 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +3 175165201 rs2161041 T G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.76;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9963;ERATE=0.0006;EUR_AF=0.83;LDAF=0.8492;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.18,-0.47 +3 175189417 rs79264590 G A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.33;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5896;RSQ=0.9979;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 175189447 rs79452486 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.33;AMR_AF=0.65;AN=2;ASN_AF=0.69;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5895;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 175345143 rs9866564 C G 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.61;AMR_AF=0.83;AN=2;ASN_AF=0.89;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7872;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +3 175473047 rs9826737 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9948;ERATE=0.0005;EUR_AF=0.93;LDAF=0.9682;RSQ=0.9403;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 176765253 rs1201300 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 178785549 rs6772028 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.95;AMR_AF=0.80;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.75;LDAF=0.8543;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 178976777 rs11720871 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.25;AMR_AF=0.56;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5612;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 179092989 rs9865666 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.79;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7107;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +3 179096508 rs7637065 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.93,-0.01 +3 179109735 rs2287209 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.79;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7107;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 179137273 rs1362650 A G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.41;AMR_AF=0.48;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4635;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 179298999 rs1132429 C T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.54;AMR_AF=0.67;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.62;LDAF=0.6888;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 179311688 rs75400090 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0490;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 179448383 rs3213761 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.64;AMR_AF=0.78;AN=2;ASN_AF=0.75;AVGPOST=0.9992;ERATE=0.0013;EUR_AF=0.69;LDAF=0.7101;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 179472674 rs2287240 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.18;AMR_AF=0.49;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4662;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 179592240 rs2339914 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5276;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 180325487 rs9858483 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.0773;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 180334623 rs7612917 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.16;AMR_AF=0.20;AN=2;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1473;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 180365956 rs6769457 G A 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.74;AMR_AF=0.31;AN=2;ASN_AF=0.0017;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3067;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 180372538 rs1401333 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9990;ERATE=0.0003;LDAF=0.0055;RSQ=0.9243;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 182546017 rs9814205 C A 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.59;AMR_AF=0.70;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6348;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182575631 rs661774 G T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.70;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6357;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182576923 rs645597 T A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.70;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6357;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +3 182590354 rs771156 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.69;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6365;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182681740 rs4859146 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.74;AMR_AF=0.65;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5887;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182681853 rs4859147 T C 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.05;AMR_AF=0.52;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.3748;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182755209 rs2270968 T G 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.22;AMR_AF=0.58;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.4776;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182790249 rs7622479 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.78;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9195;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182853670 rs482912 T C 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5270;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182858287 rs522235 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5270;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182871962 rs653316 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.81;AMR_AF=0.80;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7951;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182913092 rs577136 T G 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.40;AMR_AF=0.45;AN=2;ASN_AF=0.46;AVGPOST=0.9984;ERATE=0.0023;EUR_AF=0.49;LDAF=0.4521;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182925404 rs6804951 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.78;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9136;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 182947413 rs1122143 C G 100 PASS AA=C;AC=2;AF=0.23;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2340;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183476685 rs262993 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.24;AMR_AF=0.45;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4241;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183521133 rs263042 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.39;AMR_AF=0.51;AN=2;ASN_AF=0.68;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.46;LDAF=0.5088;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.96,-0.00,-5.00 +3 183535094 rs2582091 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.29;AMR_AF=0.48;AN=2;ASN_AF=0.55;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4460;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.01,-1.51 +3 183535763 rs897604 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.34;AMR_AF=0.54;AN=2;ASN_AF=0.64;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.52;LDAF=0.5144;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183543291 rs263006 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.24;AMR_AF=0.54;AN=2;ASN_AF=0.53;AVGPOST=0.9683;ERATE=0.0015;EUR_AF=0.55;LDAF=0.4713;RSQ=0.9528;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-0.43,-0.20,-2.12 +3 183558402 rs3732581 C G 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.47;AMR_AF=0.53;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4753;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183560195 rs13091 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.48;AMR_AF=0.53;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4766;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183561997 rs147772011 A T 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0010;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183585883 rs953419 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.24;AMR_AF=0.25;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2738;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 183660585 rs3749442 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.41;AVGPOST=0.9981;ERATE=0.0016;EUR_AF=0.18;LDAF=0.2524;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 183665062 rs1016752 G C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.93;AMR_AF=0.69;AN=2;ASN_AF=0.93;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7894;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183669396 rs4148586 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.26;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2293;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183683124 rs28365027 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0240;RSQ=0.9832;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 183685534 rs939336 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.75;AMR_AF=0.57;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6852;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183696402 rs1132776 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.72;AMR_AF=0.57;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.6753;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183699516 rs7636910 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.19;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3419;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183700211 rs2293001 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.50;AMR_AF=0.36;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4169;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183754294 rs6443930 G C 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.70;AMR_AF=0.50;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5325;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183755822 rs1000952 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.83;AMR_AF=0.67;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7592;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183756426 rs6799766 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.75;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6766;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.15,-0.54 +3 183756702 rs6789754 G A 100 PASS AA=.;AC=2;AF=0.68;AFR_AF=0.80;AMR_AF=0.60;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6796;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183756742 rs55674402 C T 100 PASS AA=.;AC=1;AF=0.34;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3433;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183756813 rs6789682 C T 100 PASS AA=.;AC=1;AF=0.33;AFR_AF=0.57;AMR_AF=0.22;AN=2;ASN_AF=0.40;AVGPOST=0.9924;ERATE=0.0012;EUR_AF=0.18;LDAF=0.3305;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 183818416 rs7627615 G A 100 PASS AA=a;AC=1;AF=0.75;AFR_AF=0.92;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7448;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183823576 rs4912524 T C 100 PASS AA=N;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183861243 rs843358 A G 100 PASS AA=a;AC=1;AF=0.37;AFR_AF=0.33;AMR_AF=0.34;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3716;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183896641 rs2231216 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.38;AN=2;ASN_AF=0.57;AVGPOST=0.9876;ERATE=0.0197;EUR_AF=0.46;LDAF=0.4089;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183900680 rs843366 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.19;AMR_AF=0.30;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.30;LDAF=0.3419;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183906515 rs843345 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.60;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5324;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183907032 rs843344 G C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.60;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5324;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183975365 rs7633387 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9878;RSQ=0.9713;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183976103 rs11546878 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.19;LDAF=0.1080;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 183976108 rs902415 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.46;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3028;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 183994536 rs843371 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.93;AMR_AF=0.79;AN=2;ASN_AF=0.66;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7887;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 183995854 rs2272471 G A 100 PASS AA=g;AC=2;AF=0.51;AFR_AF=0.50;AMR_AF=0.56;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5120;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 183996068 rs3752904 C T 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.57;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5279;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 184010048 rs3914188 G C 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.69;AMR_AF=0.75;AN=2;ASN_AF=0.62;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.74;LDAF=0.6996;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 184020542 rs11545169 G T 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0864;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184026703 rs6845 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.2957;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184037533 rs13319149 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.99;LDAF=0.9981;RSQ=0.9226;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.77,-0.01 +3 184039666 rs2178403 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7814;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 184044433 rs2293605 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.0041;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0685;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184045799 rs939317 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7930;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 184071017 rs41266265 G A 100 PASS AA=g;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1463;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184071019 rs11920716 T C 100 PASS AA=t;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.27;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1742;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184071063 rs9820367 G C 100 PASS AA=c;AC=1;AF=0.44;AFR_AF=0.69;AMR_AF=0.46;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4428;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184072459 rs73189624 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9991;ERATE=0.0024;EUR_AF=0.26;LDAF=0.1451;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184075047 rs2228291 A G 100 PASS AA=a;AC=1;AF=0.36;AFR_AF=0.50;AMR_AF=0.37;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3638;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184075958 rs41266271 C T 100 PASS AA=c;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.24;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1539;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184090266 rs6141 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.96;AMR_AF=0.66;AN=2;ASN_AF=0.44;AVGPOST=0.9939;ERATE=0.0134;EUR_AF=0.52;LDAF=0.6197;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 184099378 rs35929225 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.24;AN=2;ASN_AF=0.06;AVGPOST=0.9952;ERATE=0.0007;EUR_AF=0.30;LDAF=0.1824;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184102396 rs16858778 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1189;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184103903 rs16858780 A C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0027;EUR_AF=0.15;LDAF=0.2829;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184104864 rs145052186 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184428903 rs9872799 T G 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.50;AMR_AF=0.54;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.75;LDAF=0.5699;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184429414 rs10937187 C A 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.31;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9771;ERATE=0.0073;EUR_AF=0.75;LDAF=0.5265;RSQ=0.9707;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184550501 rs9830734 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.68;AMR_AF=0.47;AN=2;ASN_AF=0.64;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.33;LDAF=0.5134;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184573555 rs6443999 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.65;AMR_AF=0.48;AN=2;ASN_AF=0.63;AVGPOST=0.9976;ERATE=0.0017;EUR_AF=0.37;LDAF=0.5202;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184633247 rs4686879 A C 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.41;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.61;LDAF=0.4867;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184647413 rs4643688 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8967;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +3 184654166 rs6444004 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9976;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +3 184675359 rs4501092 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9978;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 184682214 rs6799328 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.82;AMR_AF=0.63;AN=2;ASN_AF=0.39;AVGPOST=0.9982;ERATE=0.0006;EUR_AF=0.69;LDAF=0.6293;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 184700356 rs4572747 A C 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.65;AMR_AF=0.95;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8839;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 184700426 rs11555405 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.02;AMR_AF=0.35;AN=2;ASN_AF=0.51;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3024;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184766249 rs6779564 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.54;AVGPOST=0.9822;ERATE=0.0255;EUR_AF=0.34;LDAF=0.4127;RSQ=0.9760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184766250 rs6766721 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.45;AN=2;ASN_AF=0.55;AVGPOST=0.9814;ERATE=0.0214;EUR_AF=0.35;LDAF=0.4219;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184766392 rs3821751 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.52;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5298;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 184911105 rs186736134 G T 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +3 185212593 rs6798873 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.43;AMR_AF=0.47;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4364;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 185229464 rs61730237 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.32;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3720;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 185232169 rs1837882 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.35;AMR_AF=0.41;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3799;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 185643454 rs2551372 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1320;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 185882643 rs4686741 C G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.64;AMR_AF=0.82;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7769;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 185990096 rs2193587 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.91;AMR_AF=0.81;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 186006566 rs710443 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.67;AMR_AF=0.67;AN=2;ASN_AF=0.71;AVGPOST=0.9969;ERATE=0.0043;EUR_AF=0.70;LDAF=0.6910;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186006618 rs1004588 G C 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.49;AMR_AF=0.48;AN=2;ASN_AF=0.63;AVGPOST=0.9935;ERATE=0.0170;EUR_AF=0.54;LDAF=0.5427;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 186015283 rs3819860 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.35;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5090;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 186015303 rs3819859 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5443;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 186015315 rs3819858 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5442;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 186293588 rs2280391 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.52;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2642;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186299905 rs6784026 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.54;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2683;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186301703 rs8147 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.52;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2642;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186302392 rs78484175 G T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.44;AMR_AF=0.36;AN=2;ASN_AF=0.33;AVGPOST=0.9805;ERATE=0.2051;EUR_AF=0.39;LDAF=0.3838;RSQ=0.9674;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186337713 rs4917 T C 100 PASS AA=N;AC=1;AF=0.71;AFR_AF=0.75;AMR_AF=0.67;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186338382 rs4918 G C 100 PASS AA=c;AC=1;AF=0.69;AFR_AF=0.69;AMR_AF=0.66;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6906;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186338425 rs1071592 A C 100 PASS AA=N;AC=2;AF=0.79;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7881;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 186370333 rs1131364 G T 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.78;AMR_AF=0.62;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6271;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 186390627 rs9898 C T 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.63;AMR_AF=0.42;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.32;LDAF=0.4630;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 186395113 rs2228243 A G 100 PASS AA=A;AC=2;AF=0.21;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 186395180 rs7629680 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9987;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +3 186395572 rs1042464 A T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.72;AMR_AF=0.62;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6365;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 186435370 rs1050274 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3515;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186435561 rs13072823 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.23;AMR_AF=0.16;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1348;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186437944 rs5029980 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.15;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0949;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186440243 rs1469859 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2692;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 186442833 rs1656921 G C 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5009;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +3 186443018 rs1656922 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5013;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 186459927 rs710446 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.52;AMR_AF=0.50;AN=2;ASN_AF=0.29;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.42;LDAF=0.4199;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 186505706 rs12630327 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.09;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1088;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 186507757 rs1047148 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0914;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 186507922 rs2066500 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.12;AMR_AF=0.30;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2962;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186509517 rs187868 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.46;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0015;EUR_AF=0.50;LDAF=0.5013;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186793423 rs7629263 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.24;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0727;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186917751 rs6764714 C G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.41;AMR_AF=0.48;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4259;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 186953808 rs850312 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.04;AMR_AF=0.35;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2376;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 186954285 rs710452 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9611;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 187009372 rs16861896 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.25;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1645;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 187009412 rs72549254 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.25;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1645;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 187088656 rs1047584 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1810;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 187088812 rs3821812 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4059;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 187088903 rs1533595 C A 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4059;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 187088923 rs35224605 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0127;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 187088926 rs1533594 G A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.63;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8134;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 187089031 rs1003995 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.06;AMR_AF=0.40;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.34;LDAF=0.3132;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 187416253 rs1523468 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.07;AMR_AF=0.57;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5293;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 187416634 rs1973791 C A 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.08;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=0.9873;ERATE=0.0053;EUR_AF=0.62;LDAF=0.5212;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +3 187416719 rs11707167 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.08;AMR_AF=0.58;AN=2;ASN_AF=0.76;AVGPOST=0.9835;ERATE=0.0089;EUR_AF=0.62;LDAF=0.5232;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-1.53,-0.01,-5.00 +3 187419816 rs61754877 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1495;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 187447032 rs1056932 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.17;AMR_AF=0.74;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6102;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 188584186 rs1877547 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0727;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 188590446 rs1136644 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.26;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4232;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 189038648 rs1055152 T C 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.86;AMR_AF=0.49;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5506;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 189582249 rs2276792 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.49;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2023;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 189587091 rs6789961 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.62;AMR_AF=0.23;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2865;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 189590824 rs9840359 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.57;AMR_AF=0.46;AN=2;ASN_AF=0.35;AVGPOST=0.9944;ERATE=0.0095;EUR_AF=0.53;LDAF=0.4803;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 189590825 rs9840360 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=0.9919;ERATE=0.0144;EUR_AF=0.17;LDAF=0.1892;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 189604149 rs1554131 T G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6988;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 189604160 rs1345186 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6992;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 189688569 rs3732920 C A 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.43;AMR_AF=0.44;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4624;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 189690861 rs710545 T A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.88;AMR_AF=0.87;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8985;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.57,-0.00 +3 189712089 rs57754021 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.49;AMR_AF=0.70;AN=2;ASN_AF=0.85;AVGPOST=0.9809;ERATE=0.0162;EUR_AF=0.67;LDAF=0.6789;RSQ=0.9720;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 189713205 rs9821880 T C 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.23;AMR_AF=0.29;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3359;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 189837993 rs710596 G A 100 PASS AA=a;AC=1;AF=0.56;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.68;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5566;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +3 189838018 rs35346557 G T 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.24;AMR_AF=0.16;AN=2;ASN_AF=0.16;AVGPOST=0.9967;ERATE=0.0008;EUR_AF=0.24;LDAF=0.2059;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 190030680 rs9869263 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.76;AMR_AF=0.81;AN=2;ASN_AF=0.83;AVGPOST=0.9979;ERATE=0.0142;EUR_AF=0.85;LDAF=0.8183;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 190158168 rs35161724 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.09;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0934;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 190167533 rs10513852 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0800;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 190327020 rs41268633 A G 100 PASS 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AA=T;AC=1;AF=0.52;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5223;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 190999872 rs6444534 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5238;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 190999917 rs6788319 C A 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5237;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 190999990 rs6444535 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5238;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 191047532 rs9847278 A G 100 PASS 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AA=A;AC=1;AF=0.50;AFR_AF=0.72;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 191093310 rs4677728 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.72;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4991;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 191093384 rs4677729 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.72;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 191093419 rs77846288 A C 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.06;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 191097908 rs293812 C T 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.83;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6247;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 191097966 rs293813 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.84;AMR_AF=0.58;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.50;LDAF=0.6260;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 191098731 rs211043 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.84;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6253;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 191100561 rs364519 C A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.84;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6252;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 192053274 rs4571187 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.58;AMR_AF=0.35;AN=2;ASN_AF=0.65;AVGPOST=0.9968;ERATE=0.0347;EUR_AF=0.28;LDAF=0.4559;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 192125768 rs2249551 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.58;AMR_AF=0.44;AN=2;ASN_AF=0.64;AVGPOST=0.9947;ERATE=0.0007;EUR_AF=0.35;LDAF=0.4910;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 192994543 rs2271791 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3624;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 192997145 rs78223566 T A 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 193016895 rs1878716 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.83;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8770;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193031926 rs2280268 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.32;AMR_AF=0.53;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5480;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 193036794 rs6788770 G C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.94;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8843;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193042776 rs11926955 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.93;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8839;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193062906 rs6444706 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9603;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193080414 rs6797429 C G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.64;AMR_AF=0.56;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5315;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193081206 rs2367605 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.56;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193081866 rs4386441 T A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.64;AMR_AF=0.70;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7079;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193096529 rs4687419 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.59;AMR_AF=0.69;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.71;LDAF=0.6988;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 193128900 rs61401139 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1755;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 193174782 rs9879227 T C 100 PASS AA=T;AC=2;AF=0.19;AFR_AF=0.40;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0024;EUR_AF=0.09;LDAF=0.1888;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0100;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +3 193182715 rs12696666 T G 100 PASS AA=T;AC=2;AF=0.22;AFR_AF=0.28;AMR_AF=0.22;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2249;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193183817 rs3796181 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.71;AMR_AF=0.54;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5434;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193209178 rs6788448 T C 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4524;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193210768 rs2130407 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5109;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193334991 rs7624750 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.60;AMR_AF=0.43;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4566;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 193336676 rs34307082 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0242;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 193355074 rs166850 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.83;LDAF=0.9078;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193364872 rs78767626 A C 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0311;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 193374964 rs9851685 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.60;AMR_AF=0.44;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 193384203 rs10937595 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.37;AMR_AF=0.39;AN=2;ASN_AF=0.25;AVGPOST=0.9955;ERATE=0.0034;EUR_AF=0.42;LDAF=0.3606;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 194061906 rs4974538 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.82;AMR_AF=0.82;AN=2;ASN_AF=0.77;AVGPOST=0.9842;ERATE=0.0020;EUR_AF=0.79;LDAF=0.7973;RSQ=0.9657;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 194061907 rs4974539 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.22;AMR_AF=0.21;AN=2;ASN_AF=0.28;AVGPOST=0.9876;ERATE=0.0054;EUR_AF=0.30;LDAF=0.2605;RSQ=0.9770;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 194062565 rs3732476 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.62;AMR_AF=0.56;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0015;EUR_AF=0.69;LDAF=0.6489;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 194063153 rs3732474 G A 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2833;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 194063300 rs62288099 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.84;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.84;LDAF=0.8044;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 194118874 rs1223989 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9952;ERATE=0.0005;EUR_AF=0.97;LDAF=0.9862;RSQ=0.8622;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 194309210 rs3732473 G A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.22;AMR_AF=0.14;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.11;LDAF=0.1738;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 194324982 rs745171 C A 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.33;AMR_AF=0.49;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4630;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +3 194325010 rs745168 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.33;AMR_AF=0.49;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4630;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.77,-0.01 +3 194337901 rs922282 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.89;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9975;ERATE=0.0021;EUR_AF=0.86;LDAF=0.8841;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +3 194387186 rs35670721 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0827;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 194387253 rs34423045 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0718;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 194390713 rs1675926 C A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.59;AMR_AF=0.74;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7687;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 194408704 rs4677673 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.79;AMR_AF=0.64;AN=2;ASN_AF=0.76;AVGPOST=0.9854;ERATE=0.0005;EUR_AF=0.64;LDAF=0.7048;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.16,-0.52,-3.11 +3 194408821 rs79296405 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.06;AVGPOST=0.9956;ERATE=0.0006;EUR_AF=0.04;LDAF=0.0577;RSQ=0.9658;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.03,-1.16 +3 195102787 rs2275518 T C 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3771;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195245805 rs17847362 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.61;AMR_AF=0.73;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7235;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195300676 rs1568566 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.99;AMR_AF=0.77;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.9067;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 195306219 rs5953 G A 100 PASS AA=G;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 195477713 rs2291654 G A 100 PASS AA=g;AC=2;AF=0.73;AFR_AF=0.61;AMR_AF=0.66;AN=2;ASN_AF=0.78;AVGPOST=0.9771;ERATE=0.0061;EUR_AF=0.82;LDAF=0.7340;RSQ=0.9588;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 195477715 rs2291653 C A 100 PASS AA=c;AC=2;AF=0.56;AFR_AF=0.34;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=0.9795;ERATE=0.0074;EUR_AF=0.62;LDAF=0.5641;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 195477791 rs2291652 G A 100 PASS AA=g;AC=2;AF=0.43;AFR_AF=0.09;AMR_AF=0.40;AN=2;ASN_AF=0.72;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4323;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195478012 rs2291651 G C 100 PASS AA=N;AC=2;AF=0.83;AFR_AF=0.99;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9956;ERATE=0.0005;EUR_AF=0.82;LDAF=0.8328;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +3 195479256 rs2258447 T C 100 PASS AA=.;AC=2;AF=0.83;AFR_AF=0.66;AMR_AF=0.91;AN=2;ASN_AF=0.79;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.92;LDAF=0.8285;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195484244 rs2550270 G A 100 PASS AA=.;AC=2;AF=0.69;AFR_AF=0.46;AMR_AF=0.62;AN=2;ASN_AF=0.77;AVGPOST=0.9902;ERATE=0.0025;EUR_AF=0.82;LDAF=0.6903;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +3 195487737 rs2246771 A G 100 PASS AA=.;AC=2;AF=0.70;AFR_AF=0.72;AMR_AF=0.59;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7038;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195489009 rs2246901 C A 100 PASS AA=.;AC=2;AF=0.65;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.78;AVGPOST=0.9923;ERATE=0.0011;EUR_AF=0.72;LDAF=0.6554;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.71,-0.01 +3 195489067 rs2246980 C G 100 PASS AA=.;AC=2;AF=0.45;AFR_AF=0.16;AMR_AF=0.39;AN=2;ASN_AF=0.72;AVGPOST=0.9939;ERATE=0.0006;EUR_AF=0.46;LDAF=0.4461;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +3 195490284 rs61617169 T C 100 PASS AA=.;AC=2;AF=0.68;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=0.9934;ERATE=0.0016;EUR_AF=0.75;LDAF=0.6841;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +3 195492027 rs11926236 T C 100 PASS AA=.;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9886;RSQ=0.9535;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.64,-0.00 +3 195495916 rs2550240 G C 100 PASS AA=.;AC=2;AF=0.45;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.72;AVGPOST=0.9992;ERATE=0.0015;EUR_AF=0.44;LDAF=0.4476;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195497174 rs2259102 C G 100 PASS AA=.;AC=2;AF=0.84;AFR_AF=0.99;AMR_AF=0.71;AN=2;ASN_AF=0.78;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.84;LDAF=0.8362;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195501149 rs2259292 C T 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.60;AMR_AF=0.48;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.58;LDAF=0.6033;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195782176 rs419068 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=0.9868;ERATE=0.0014;EUR_AF=0.33;LDAF=0.2520;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 195782177 rs366268 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.24;AMR_AF=0.27;AN=2;ASN_AF=0.13;AVGPOST=0.9888;ERATE=0.0081;EUR_AF=0.32;LDAF=0.2430;RSQ=0.9796;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 195782184 rs419059 C T 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.35;LDAF=0.2790;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 195789428 rs507131 C A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.51;AMR_AF=0.73;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.6463;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 195798258 rs480760 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.68;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.97;LDAF=0.9071;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195801025 rs3736651 T A 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.2500;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 195938177 rs1522394 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.48;AVGPOST=0.9879;ERATE=0.0083;EUR_AF=0.27;LDAF=0.2796;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 195955762 rs939885 G A 100 PASS AA=A;AC=2;AF=0.50;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5001;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195956827 rs17852687 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.35;AMR_AF=0.49;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5181;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195956970 rs67261052 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.25;AMR_AF=0.38;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.31;LDAF=0.4182;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 195959924 rs1476331 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.53;AMR_AF=0.51;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.5850;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 196044894 rs2270769 G C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.14;AMR_AF=0.39;AN=2;ASN_AF=0.78;AVGPOST=0.9960;ERATE=0.0025;EUR_AF=0.32;LDAF=0.4139;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +3 196054439 rs6785339 T G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.48;AMR_AF=0.61;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6441;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 196054488 rs6782336 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.48;AMR_AF=0.62;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6444;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 196386964 rs1798631 C G 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.67;AMR_AF=0.83;AN=2;ASN_AF=0.93;AVGPOST=0.9932;ERATE=0.0096;EUR_AF=0.74;LDAF=0.7902;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +3 196388099 rs62623661 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0581;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 196435534 rs6776064 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.44;AMR_AF=0.32;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4345;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 196547446 rs2084382 G C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.59;AMR_AF=0.36;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3810;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 196554020 rs2084386 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.89;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9141;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 196626689 rs9842002 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1444;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 196656579 rs145947941 A G 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.08;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0179;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 196674749 rs4916589 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.64;AMR_AF=0.54;AN=2;ASN_AF=0.80;AVGPOST=0.9917;ERATE=0.0210;EUR_AF=0.60;LDAF=0.6532;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 196674879 rs12636891 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.61;AMR_AF=0.55;AN=2;ASN_AF=0.78;AVGPOST=0.9987;ERATE=0.0062;EUR_AF=0.50;LDAF=0.6036;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0133;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 196674972 rs574365 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.65;AMR_AF=0.71;AN=2;ASN_AF=0.80;AVGPOST=0.9781;ERATE=0.0084;EUR_AF=0.63;LDAF=0.6919;RSQ=0.9674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 196674973 rs573708 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.76;AMR_AF=0.70;AN=2;ASN_AF=0.76;AVGPOST=0.9763;ERATE=0.0039;EUR_AF=0.63;LDAF=0.7079;RSQ=0.9654;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 196735624 rs965666 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9952;ERATE=0.0010;EUR_AF=0.08;LDAF=0.1359;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 196749798 rs2288766 T G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.78;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9976;ERATE=0.0064;EUR_AF=0.83;LDAF=0.8133;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 196750016 rs2288765 A G 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.78;AMR_AF=0.78;AN=2;ASN_AF=0.79;AVGPOST=0.9993;ERATE=0.0019;EUR_AF=0.82;LDAF=0.7981;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 196778438 rs7629533 C T 100 PASS AA=c;AC=2;AF=0.23;AFR_AF=0.37;AMR_AF=0.23;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.24;LDAF=0.2290;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 196865242 rs1134986 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0920;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 196869688 rs7628652 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 197239266 rs9325394 C G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.27;AMR_AF=0.25;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2614;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 197241286 rs35089738 G C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.17;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0037;EUR_AF=0.07;LDAF=0.0707;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 197432063 rs58507505 T C 100 PASS AA=t;AC=1;AF=0.21;AFR_AF=0.38;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=0.9964;ERATE=0.0005;EUR_AF=0.21;LDAF=0.2103;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +3 197483279 rs6794391 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8953;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 197495334 rs3205525 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.42;AMR_AF=0.81;AN=2;ASN_AF=0.93;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.87;LDAF=0.7765;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 197496984 rs1708460 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9891;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +3 197544201 rs1273552 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.81;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9008;RSQ=0.9969;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.88,-0.01 +3 197557635 rs501101 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.47;AMR_AF=0.80;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.83;LDAF=0.7698;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +3 197566254 rs17850206 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3591;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +3 197574936 rs2306439 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.06;AMR_AF=0.40;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.49;LDAF=0.3716;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 45895 rs4241318 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.96;AVGPOST=0.9814;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9865;RSQ=0.4856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-4.70,-0.58,-0.13 +2 276942 rs7573495 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3730;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 1079320 rs4971432 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.59;AMR_AF=0.79;AN=2;ASN_AF=0.68;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7168;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1133367 rs79642551 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0823;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 1168756 rs4597564 G A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 1418192 rs9678281 C G 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.30;AMR_AF=0.40;AN=2;ASN_AF=0.21;AVGPOST=0.9971;ERATE=0.0036;EUR_AF=0.39;LDAF=0.3258;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1426787 rs2276701 G A 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2151;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1437163 rs1473936 A C 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.51;AMR_AF=0.36;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3286;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1459806 rs4927610 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.88;AMR_AF=0.93;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9268;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1460004 rs4927611 G T 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.41;AMR_AF=0.37;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3295;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1488668 rs6715129 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.75;AMR_AF=0.52;AN=2;ASN_AF=0.53;AVGPOST=0.9907;ERATE=0.0041;EUR_AF=0.48;LDAF=0.5597;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1497803 rs1126797 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.34;AMR_AF=0.38;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.36;LDAF=0.3771;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1499728 rs2276704 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2804;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +2 1499899 rs732608 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.46;AMR_AF=0.42;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4205;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1499927 rs732609 A C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.67;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4710;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1520676 rs1126799 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.79;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=0.9867;ERATE=0.0169;EUR_AF=0.52;LDAF=0.6107;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1647171 rs6730800 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.79;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.90;LDAF=0.9083;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1652660 rs3811613 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.28;AVGPOST=0.9892;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2491;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +2 1652822 rs1863135 T G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.91;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.89;LDAF=0.9352;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1664654 rs17841813 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.98;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8032;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1842968 rs6728368 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.69;AMR_AF=0.33;AN=2;ASN_AF=0.63;AVGPOST=0.9846;ERATE=0.0007;EUR_AF=0.32;LDAF=0.4837;RSQ=0.9811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 1844652 rs7425544 C T 100 PASS AA=c;AC=1;AF=0.48;AFR_AF=0.61;AMR_AF=0.34;AN=2;ASN_AF=0.63;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.36;LDAF=0.4842;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-1.38,-0.02,-5.00 +2 1891412 rs144422182 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0023;RSQ=0.9626;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 1893133 rs75247762 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.06;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0751;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 1926437 rs1529667 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9892;RSQ=0.9054;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 1983374 rs2304008 A C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.75;AMR_AF=0.30;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4360;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 3217908 rs11682452 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9333;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 3391826 rs11127423 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.42;AVGPOST=0.9562;ERATE=0.0023;EUR_AF=0.24;LDAF=0.2827;RSQ=0.9191;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-1.85,-0.01,-5.00 +2 3392075 rs10865541 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.71;AMR_AF=0.54;AN=2;ASN_AF=0.68;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.62;LDAF=0.6435;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3392295 rs11686212 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.40;AMR_AF=0.35;AN=2;ASN_AF=0.61;AVGPOST=0.9956;ERATE=0.0017;EUR_AF=0.39;LDAF=0.4420;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3425729 rs1132171 C T 100 PASS AA=C;AC=1;AF=0.09;AMR_AF=0.03;AN=2;ASN_AF=0.30;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0895;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3428364 rs117838642 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0004;LDAF=0.0148;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3469463 rs4971514 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.50;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4266;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3483205 rs6767 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.37;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4648;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3599700 rs7563960 G T 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.91;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6247;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3624051 rs62106034 C A 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0438;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 3685074 rs3811527 A G 100 PASS AA=A;AC=1;AF=0.84;AFR_AF=0.87;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.81;LDAF=0.8351;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3721729 rs12105179 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.93;AMR_AF=0.38;AN=2;ASN_AF=0.35;AVGPOST=0.9967;ERATE=0.0007;EUR_AF=0.45;LDAF=0.5229;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3726163 rs2043080 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.68;AMR_AF=0.33;AN=2;ASN_AF=0.38;AVGPOST=0.9985;ERATE=0.0009;EUR_AF=0.48;LDAF=0.4737;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3729254 rs13426642 C T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.36;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1968;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3749084 rs11689171 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.38;LDAF=0.3110;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 3749267 rs11681270 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3099;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 7005369 rs11678810 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9957;RSQ=0.7656;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +2 7017903 rs10182815 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9651;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 7027323 rs9917321 T A 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.57;AMR_AF=0.82;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7690;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 7137067 rs364891 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.87;AMR_AF=0.78;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8089;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 7154632 rs309325 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 7164578 rs376219 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.09;AMR_AF=0.36;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2454;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 8870814 rs6431959 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=0.96;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9501;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 8870862 rs13406422 T C 100 PASS AA=T;AC=1;AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.32;AVGPOST=0.9943;ERATE=0.0019;EUR_AF=0.01;LDAF=0.1061;RSQ=0.9800;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 8871342 rs1044280 C A 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2345;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 8910987 rs12476359 A T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.84;AMR_AF=0.93;AN=2;ASN_AF=0.88;AVGPOST=0.9648;ERATE=0.0620;EUR_AF=0.88;LDAF=0.8669;RSQ=0.8709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 8911010 rs17630893 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.66;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.56;LDAF=0.4899;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 8916847 rs4669338 A T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.85;AMR_AF=0.97;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9470;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 8943291 rs2356658 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9945;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.11,-0.00 +2 9419411 rs10193043 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.40;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=0.9992;ERATE=0.0031;EUR_AF=0.90;LDAF=0.7061;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 9419415 rs10170149 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=0.9991;ERATE=0.0074;EUR_AF=0.65;LDAF=0.5641;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 9491017 rs4669385 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.71;AMR_AF=0.96;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=1.00;LDAF=0.9031;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 9491059 rs146776570 C T 100 PASS AA=C;AC=2;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.01;LDAF=0.0054;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-5.00,0.00 +2 9983686 rs2303914 G T 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.46;AMR_AF=0.56;AN=2;ASN_AF=0.67;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.53;LDAF=0.5571;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +2 9983716 rs385513 A C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.79;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9783;ERATE=0.0032;EUR_AF=0.99;LDAF=0.9377;RSQ=0.8772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.62,-0.51,-0.16 +2 10044941 rs450192 G T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.15;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9967;ERATE=0.0009;EUR_AF=0.64;LDAF=0.4772;RSQ=0.9952;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 10044951 rs2052948 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.45;AMR_AF=0.35;AN=2;ASN_AF=0.34;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3510;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 10045014 rs400917 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.73;AMR_AF=0.93;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8596;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 10045024 rs396190 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9529;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 10045147 rs448327 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9575;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 10050947 rs1054561 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.15;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4785;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 10050960 rs1054565 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.15;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4785;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 10051053 rs10495576 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.15;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 10053412 rs12467598 C T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.15;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4785;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 10059770 rs1820965 G T 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.15;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4912;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 10059844 rs16867245 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1421;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 10188649 rs11687357 A T 100 PASS AA=T;AC=1;AF=0.84;AFR_AF=0.82;AMR_AF=0.89;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8366;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 10583846 rs200691250 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +2 10712278 rs3732114 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.47;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3112;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 10729897 rs759403 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.76;AMR_AF=0.55;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6099;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 10743191 rs2287062 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.76;AMR_AF=0.55;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6097;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 10743319 rs2287063 T C 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.47;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3124;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 10747271 rs6759740 A G 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.76;AMR_AF=0.55;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6098;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +2 10784491 rs3732111 A G 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.28;AMR_AF=0.30;AN=2;ASN_AF=0.41;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2606;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +2 10784528 rs3821196 T C 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.36;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2860;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.51,-0.00 +2 10822228 rs117898643 T C 100 PASS AA=T;AC=2;AF=0.02;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0197;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +2 10915090 rs58188788 T A 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.07;AMR_AF=0.32;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.27;LDAF=0.3102;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 11300732 rs2271622 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3908;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 11300869 rs6432182 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9338;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 11312181 rs12987956 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.04;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3529;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 11333994 rs2271621 T G 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.12;AMR_AF=0.24;AN=2;ASN_AF=0.54;AVGPOST=0.9953;ERATE=0.0035;EUR_AF=0.30;LDAF=0.3134;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 11359120 rs2230774 G T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.20;AMR_AF=0.55;AN=2;ASN_AF=0.41;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.52;LDAF=0.4260;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 11702661 rs10929757 A C 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.06;AMR_AF=0.47;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0026;EUR_AF=0.57;LDAF=0.4250;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 11718591 rs1529868 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.47;AMR_AF=0.50;AN=2;ASN_AF=0.52;AVGPOST=0.9991;ERATE=0.0053;EUR_AF=0.57;LDAF=0.5247;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 11725241 rs12470971 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.11;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3560;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +2 11727507 rs13394619 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.92;AMR_AF=0.60;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6230;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 11738091 rs1435547 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9401;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 11738765 rs1865575 C T 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.78;AMR_AF=0.98;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9374;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 11740961 rs76644468 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.10;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0354;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 11752635 rs2304399 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9836;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 11755443 rs2252958 T G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.66;AMR_AF=0.85;AN=2;ASN_AF=0.97;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8235;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.05,-0.00 +2 11810095 rs6432225 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9950;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9756;RSQ=0.9255;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.900:-0.48,-0.48,-0.48 +2 11907842 rs45509591 C T 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1033;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.46,-0.19 +2 11911761 rs11538448 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0631;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 11932173 rs7561070 G T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.94;AMR_AF=0.43;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5459;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15427173 rs4668892 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.84;AMR_AF=0.56;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.43;LDAF=0.6496;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15448311 rs1318102 A T 100 PASS AA=T;AC=1;AF=0.63;AFR_AF=0.73;AMR_AF=0.56;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6307;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15468025 rs2042145 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2742;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15493881 rs2277915 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.16;AMR_AF=0.57;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4162;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15519992 rs2058866 G T 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.52;AMR_AF=0.63;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5220;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15542352 rs16862653 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.10;AMR_AF=0.06;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0838;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 15601441 rs7590340 C T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.56;AMR_AF=0.64;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5329;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15607842 rs4668909 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.12;AMR_AF=0.57;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4017;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15614404 rs13014906 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5252;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15615910 rs1990754 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15616013 rs1990755 C G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15616030 rs1990756 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4872;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15618339 rs1125534 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.57;AMR_AF=0.64;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5338;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15674686 rs13029846 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.18;AMR_AF=0.58;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4168;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15676686 rs10208972 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.60;AMR_AF=0.63;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 15768981 rs62122280 C G 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2020;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 17696573 rs834514 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.17;AMR_AF=0.61;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5786;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 17698678 rs665312 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.20;AMR_AF=0.65;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.64;LDAF=0.6033;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 17773524 rs2680827 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.38;AMR_AF=0.69;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.6965;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 17883218 rs11681696 T A 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.20;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.31;LDAF=0.1983;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 17884495 rs1065381 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.31;AMR_AF=0.25;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2257;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 17888457 rs6734462 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.83;AMR_AF=0.40;AN=2;ASN_AF=0.09;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4281;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 17897488 rs35195207 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1316;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 17898326 rs12469221 C T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.83;AMR_AF=0.40;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4282;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 17942775 rs1812152 T A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.80;AMR_AF=0.75;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.7852;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 17954027 rs300175 G A 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 17954421 rs300177 C G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.79;AMR_AF=0.75;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.65;LDAF=0.7833;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 17962450 rs300168 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.19;AMR_AF=0.60;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5644;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 17962518 rs300169 C T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.63;AMR_AF=0.73;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.7431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 17998025 rs34069439 A T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.03;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3305;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 17998095 rs35858730 C T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3056;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 17998331 rs13001625 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.22;AMR_AF=0.40;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.54;LDAF=0.3118;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 18112473 rs4240213 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9461;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 18113508 rs3747516 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.17;LDAF=0.3145;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 18113623 rs4832524 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.72;AMR_AF=0.76;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.62;LDAF=0.7577;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 20101487 rs2304589 G A 100 PASS AA=g;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2446;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 20131184 rs1191779 C A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9757;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 20135283 rs6741091 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.49;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4954;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 20189089 rs3731663 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.77;AMR_AF=0.52;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6019;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 20192931 rs35973216 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.22;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2509;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 20194036 rs3820949 G C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.48;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4946;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 20202929 rs28452699 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.19;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1527;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 20205680 rs28401180 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.53;AMR_AF=0.45;AN=2;ASN_AF=0.66;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5066;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 20205848 rs28598872 G A 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.54;AMR_AF=0.45;AN=2;ASN_AF=0.66;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.40;LDAF=0.5070;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 20403794 rs10205485 A T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9680;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 20403949 rs2230924 C T 100 PASS AA=c;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.28;AN=2;ASN_AF=0.09;AVGPOST=0.9973;ERATE=0.0019;EUR_AF=0.27;LDAF=0.1973;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 20823612 rs13030108 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.67;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8068;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.08,-0.00 +2 20823724 rs6531248 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9969;RSQ=0.9075;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +2 20823816 rs2305460 G T 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.26;AMR_AF=0.48;AN=2;ASN_AF=0.78;AVGPOST=0.9944;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4707;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +2 20824559 rs2305457 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.04;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2883;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 20824658 rs10199441 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.4004;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 20838318 rs3796064 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.20;AMR_AF=0.29;AN=2;ASN_AF=0.58;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.27;LDAF=0.3418;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 20845273 rs2304423 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.80;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7047;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 20870579 rs13013489 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.78;AMR_AF=0.83;AN=2;ASN_AF=0.84;AVGPOST=0.9668;ERATE=0.0024;EUR_AF=0.69;LDAF=0.7698;RSQ=0.9292;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.09,-0.47,-0.18 +2 20871190 rs4666457 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9989;RSQ=0.8251;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.71,-0.01 +2 20939706 rs2046325 T C 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.50;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2986;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 20939708 rs653347 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.22;AMR_AF=0.44;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4179;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 21225281 rs1042034 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.84;AMR_AF=0.78;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6629;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 21231524 rs676210 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3367;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 21232803 rs584542 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0063;EUR_AF=0.97;LDAF=0.9723;RSQ=0.9604;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 21235475 rs568413 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 21250914 rs679899 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.15;AMR_AF=0.40;AN=2;ASN_AF=0.84;AVGPOST=0.9967;ERATE=0.0014;EUR_AF=0.49;LDAF=0.4895;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 21251243 rs139864087 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 24108652 rs7579201 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24110657 rs75512051 A T 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.07;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0647;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 24194314 rs1533440 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.30;AMR_AF=0.65;AN=2;ASN_AF=0.82;AVGPOST=0.9958;ERATE=0.0037;EUR_AF=0.55;LDAF=0.5793;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24255862 rs10179142 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24400769 rs55661701 A C 100 PASS AA=G;AC=2;AF=0.15;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1535;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24413298 rs2288073 A G 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.33;LDAF=0.2171;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24431184 rs2303291 C T 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.27;LDAF=0.1590;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24432138 rs2303292 C T 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1609;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +2 24432667 rs2303295 C G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.68;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8629;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24432839 rs2303296 A G 100 PASS AA=A;AC=2;AF=0.16;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1603;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24432937 rs2303297 C T 100 PASS AA=C;AC=2;AF=0.16;AFR_AF=0.04;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1612;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24435599 rs41281481 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0142;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 24440847 rs146263778 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +2 24468955 rs200107442 A C 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8642;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +2 24475205 rs4450560 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24484150 rs4665680 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.85;AMR_AF=0.92;AN=2;ASN_AF=0.95;AVGPOST=0.9680;ERATE=0.0298;EUR_AF=0.93;LDAF=0.9107;RSQ=0.8540;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 24521493 rs7559133 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.96;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9776;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24524958 rs7603997 C T 100 PASS AA=T;AC=2;AF=0.30;AFR_AF=0.41;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3044;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24905927 rs11125744 G C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.52;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8382;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 24962252 rs3820933 G A 100 PASS AA=G;AC=2;AF=0.12;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1249;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +2 24974945 rs11125763 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.63;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8648;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 25038499 rs201226760 A C 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +2 25046090 rs1127568 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.50;AMR_AF=0.75;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.67;LDAF=0.6983;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 25047408 rs7604576 A G 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.27;AMR_AF=0.60;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5160;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 25050977 rs7566416 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.38;AMR_AF=0.76;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6723;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 25064079 rs2241757 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.09;AMR_AF=0.52;AN=2;ASN_AF=0.61;AVGPOST=0.9915;ERATE=0.0022;EUR_AF=0.38;LDAF=0.3989;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.100:-5.00,-1.41,-0.02 +2 25064157 rs2241758 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9979;ERATE=0.0024;EUR_AF=0.08;LDAF=0.0875;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 25194741 rs7593864 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.63;AMR_AF=0.87;AN=2;ASN_AF=0.76;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7549;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +2 25458546 rs2304429 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.14;AMR_AF=0.52;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.59;LDAF=0.4042;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 25463483 rs2289195 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.38;AMR_AF=0.50;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.44;LDAF=0.3844;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 25466888 rs2289093 G T 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.50;AMR_AF=0.70;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0026;EUR_AF=0.76;LDAF=0.6481;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.36,-0.00 +2 25469913 rs2276599 C T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.54;AMR_AF=0.70;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=0.75;LDAF=0.6563;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 25602142 rs2304426 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.64;AMR_AF=0.48;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.59;LDAF=0.4676;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 25656880 rs1395949 C G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.85;AMR_AF=0.78;AN=2;ASN_AF=0.78;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8400;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26177198 rs17047211 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.27;AMR_AF=0.16;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1403;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26203678 rs1465878 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26204640 rs6721440 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.74;AMR_AF=0.40;AN=2;ASN_AF=0.06;AVGPOST=0.9894;ERATE=0.0026;EUR_AF=0.43;LDAF=0.3957;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26321526 rs11678157 T C 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.61;AMR_AF=0.79;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7765;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26350136 rs2289022 G T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.68;AMR_AF=0.80;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7966;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26417533 rs1865324 C A 100 PASS AA=A;AC=1;AF=0.86;AFR_AF=0.96;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8588;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26455002 rs35746418 C G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1417;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26455127 rs11552518 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1385;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26457267 rs3892649 T G 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1376;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26501953 rs7604564 C A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1645;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26502875 rs1056389 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1422;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26505858 rs17528590 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1417;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26507076 rs2303893 A T 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2693;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26507724 rs17528653 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1417;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26532491 rs2007556 G T 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.73;AMR_AF=0.73;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7464;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26533023 rs3851967 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.52;AMR_AF=0.67;AN=2;ASN_AF=0.75;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6691;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26534112 rs77088392 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0117;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26534801 rs7568529 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.64;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.72;LDAF=0.7188;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26536299 rs11886746 C G 100 PASS AA=g;AC=1;AF=0.35;AFR_AF=0.49;AMR_AF=0.35;AN=2;ASN_AF=0.28;AVGPOST=0.9983;ERATE=0.0005;EUR_AF=0.31;LDAF=0.3502;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +2 26536694 rs2052937 C T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.68;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7076;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0098;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26537499 rs10187359 A C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9434;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26590084 rs6748996 T G 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.38;LDAF=0.2606;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26590118 rs6731447 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2601;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26606154 rs1109465 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.62;AVGPOST=0.9963;ERATE=0.0071;EUR_AF=0.08;LDAF=0.2327;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26607815 rs4665853 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.61;AVGPOST=0.9991;ERATE=0.0022;EUR_AF=0.07;LDAF=0.2264;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26607992 rs934280 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9323;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26647277 rs7423300 T G 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.6106;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26652671 rs4356622 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.86;AMR_AF=0.77;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7386;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26663213 rs13421454 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.09;AN=2;ASN_AF=0.10;AVGPOST=0.9581;ERATE=0.0331;EUR_AF=0.04;LDAF=0.1162;RSQ=0.8365;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.800:-1.16,-0.03,-5.00 +2 26663215 rs56218945 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9306;ERATE=0.0814;EUR_AF=0.49;LDAF=0.3331;RSQ=0.8536;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:0.950:-1.36,-0.02,-5.00 +2 26667130 rs3795958 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.21;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1577;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26667615 rs61509377 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9993;RSQ=0.7462;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26671544 rs4072407 A G 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.33;AMR_AF=0.65;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.83;LDAF=0.5315;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26676322 rs1402962 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26676395 rs12623642 G T 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2328;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26693967 rs2272072 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2382;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26699126 rs4335905 C G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.79;AMR_AF=0.64;AN=2;ASN_AF=0.98;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.49;LDAF=0.7104;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26699855 rs2272069 G C 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.26;AMR_AF=0.53;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5242;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26724725 rs6547079 T G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.87;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.61;LDAF=0.7092;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.65,-0.01 +2 26726752 rs884390 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.08;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2994;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26739247 rs7575020 T A 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4277;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26741961 rs13031859 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.48;AN=2;ASN_AF=0.10;AVGPOST=0.9935;ERATE=0.0043;EUR_AF=0.45;LDAF=0.2806;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 26804218 rs935171 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0018;EUR_AF=1.00;LDAF=0.9680;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26804247 rs935172 T C 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.56;AMR_AF=0.57;AN=2;ASN_AF=0.67;AVGPOST=0.9979;ERATE=0.0062;EUR_AF=0.52;LDAF=0.5777;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 26818006 rs1148962 T C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.73;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8848;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26818021 rs1148963 C T 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.30;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.85;LDAF=0.7596;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 26950560 rs199957242 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0006;RSQ=0.7139;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +2 26951449 rs1663002 G A 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9960;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9705;RSQ=0.9488;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.78,-0.08 +2 27014980 rs12992046 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2633;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27015118 rs13014800 G A 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2633;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +2 27015969 rs2289018 G A 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.12;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2633;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27157400 rs920436 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9714;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27163044 rs3739085 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.59;AMR_AF=0.46;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6010;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27164806 rs3820823 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.59;AMR_AF=0.46;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6010;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27169842 rs11126784 C A 100 PASS AA=c;AC=2;AF=0.58;AFR_AF=0.43;AMR_AF=0.49;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5753;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +2 27246285 rs10865456 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.83;AMR_AF=0.89;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8688;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27249245 rs3754733 A G 100 PASS AA=g;AC=2;AF=0.65;AFR_AF=0.62;AMR_AF=0.53;AN=2;ASN_AF=0.75;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.65;LDAF=0.6480;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27261329 rs11690454 A G 100 PASS AA=a;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27280127 rs6721395 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.36;AMR_AF=0.59;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6705;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27290525 rs11681145 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.38;AMR_AF=0.59;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.70;LDAF=0.6746;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27291661 rs7575465 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.08;AMR_AF=0.43;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.57;LDAF=0.4790;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +2 27293150 rs1053609 G T 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.28;AMR_AF=0.49;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5608;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27303755 rs2736976 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9716;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.48,-0.00 +2 27351279 rs1866561 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.58;AMR_AF=0.54;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6270;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 27351948 rs6715286 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9854;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27355454 rs4665948 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27424496 rs1006898 G A 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.49;AMR_AF=0.88;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8418;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27424636 rs1395 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.19;AMR_AF=0.57;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6156;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27428295 rs1275524 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27428877 rs1275527 C G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.49;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8487;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27435250 rs1275533 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9946;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9266;RSQ=0.9746;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-2.93,-0.46,-0.19 +2 27435374 rs11608 G A 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.19;AMR_AF=0.58;AN=2;ASN_AF=0.89;AVGPOST=0.9940;ERATE=0.0005;EUR_AF=0.72;LDAF=0.6215;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +2 27440785 rs1275536 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27801403 rs1919125 C G 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.63;AN=2;ASN_AF=0.86;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.49;LDAF=0.6632;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27801418 rs1919126 C A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.63;AN=2;ASN_AF=0.86;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6622;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27801493 rs1919127 T C 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.56;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3537;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27801759 rs1919128 A G 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.03;AMR_AF=0.46;AN=2;ASN_AF=0.56;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3268;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27804432 rs28381983 T C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.82;AMR_AF=0.66;AN=2;ASN_AF=0.86;AVGPOST=0.9915;ERATE=0.0037;EUR_AF=0.51;LDAF=0.6957;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27838058 rs11127071 C A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.72;AMR_AF=0.63;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6590;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27839107 rs6737921 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.72;AMR_AF=0.63;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6591;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27851918 rs3749147 G A 100 PASS AA=G;AC=2;AF=0.23;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2294;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 27857992 rs4666009 T A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.75;AMR_AF=0.64;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6805;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 28634790 rs12624279 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.27;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.41;LDAF=0.2792;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28748857 rs4666085 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9702;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 28752555 rs4473343 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.78;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9013;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 28761257 rs7589169 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.65;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8638;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.59,-0.00 +2 28761282 rs7589254 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.66;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8649;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.98,-0.00 +2 28761981 rs6753929 G C 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2116;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28789643 rs10186460 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.29;AMR_AF=0.38;AN=2;ASN_AF=0.25;AVGPOST=0.9973;ERATE=0.0038;EUR_AF=0.48;LDAF=0.3615;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0189;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28805410 rs4666102 C A 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.40;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3592;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +2 28812285 rs12468715 T C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.51;AMR_AF=0.38;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3931;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 28812982 rs4666105 C T 100 PASS AA=c;AC=2;AF=0.40;AFR_AF=0.54;AMR_AF=0.39;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4017;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 28814033 rs11681826 A G 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.36;AMR_AF=0.29;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0022;EUR_AF=0.19;LDAF=0.2738;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 28814548 rs12464271 A T 100 PASS AA=A;AC=2;AF=0.26;AFR_AF=0.34;AMR_AF=0.27;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2639;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 28821613 rs35746006 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0581;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28821662 rs7557359 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.66;AMR_AF=0.60;AN=2;ASN_AF=0.86;AVGPOST=0.9924;ERATE=0.0098;EUR_AF=0.59;LDAF=0.6806;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28824793 rs7601771 C G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.71;AMR_AF=0.59;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6809;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28827625 rs34289907 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0594;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28827644 rs36116681 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0585;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28836901 rs115147925 G A 100 PASS AA=G;AC=1;AF=0.0023;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0023;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28843871 rs35800423 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0493;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28865760 rs2272387 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.51;AMR_AF=0.29;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.43;LDAF=0.4013;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28865968 rs57817040 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.52;AMR_AF=0.30;AN=2;ASN_AF=0.33;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.43;LDAF=0.4035;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 28865977 rs1052358 C T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.27;AMR_AF=0.08;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1085;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29001691 rs1128416 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.57;AMR_AF=0.48;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4776;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 29045323 rs4436918 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9771;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 29092679 rs4233729 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.39;AMR_AF=0.54;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.44;LDAF=0.5265;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29092850 rs4666122 G T 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.39;AMR_AF=0.54;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5265;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29129418 rs11688605 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.19;AMR_AF=0.41;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3949;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29135468 rs6715296 C G 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.69;LDAF=0.7070;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29140711 rs4389288 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.20;AMR_AF=0.41;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3974;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.67,-0.10 +2 29169612 rs3087649 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.71;AMR_AF=0.76;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7536;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29222070 rs13009279 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.22;AMR_AF=0.26;AN=2;ASN_AF=0.58;AVGPOST=0.9989;ERATE=0.0011;EUR_AF=0.28;LDAF=0.3442;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29226498 rs12613325 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.32;AMR_AF=0.71;AN=2;ASN_AF=0.65;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.74;LDAF=0.6174;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.52,-0.01 +2 29226512 rs12623297 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.64;AMR_AF=0.81;AN=2;ASN_AF=0.81;AVGPOST=0.9914;ERATE=0.0040;EUR_AF=0.82;LDAF=0.7753;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.61,-0.00 +2 29226559 rs12619829 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.46;AMR_AF=0.78;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6817;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +2 29240005 rs13409097 T C 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.08;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4154;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 29245933 rs13420380 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.38;AMR_AF=0.40;AN=2;ASN_AF=0.72;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.31;LDAF=0.4457;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.82 +2 29246044 rs6721861 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.68;AMR_AF=0.42;AN=2;ASN_AF=0.72;AVGPOST=0.9970;ERATE=0.0010;EUR_AF=0.31;LDAF=0.5197;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.24 +2 29274720 rs895591 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.58;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9971;ERATE=0.0017;EUR_AF=0.51;LDAF=0.5954;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 29287708 rs10182566 C T 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.30;AMR_AF=0.27;AN=2;ASN_AF=0.51;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3275;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29294239 rs144569618 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.09;AN=2;AVGPOST=0.9948;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0267;RSQ=0.9271;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 29294629 rs34253433 C T 100 PASS AA=c;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.16;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1477;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29294754 rs17744093 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1480;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29295016 rs10200693 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.45;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3339;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29295676 rs13385188 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.45;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3324;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29296870 rs62132765 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1341;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29297068 rs35929540 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1401;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29356669 rs3100232 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.65;AMR_AF=0.32;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4237;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29366830 rs3213947 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.22;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4383;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 29383256 rs3100246 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0667;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29383374 rs2305450 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.80;AMR_AF=0.91;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8747;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 29416366 rs1881421 G C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.66;AMR_AF=0.53;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5654;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 29416481 rs1881420 T C 100 PASS AA=t;AC=1;AF=0.40;AFR_AF=0.23;AMR_AF=0.42;AN=2;ASN_AF=0.73;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3949;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 29416572 rs1670283 T C 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 29419591 rs1670284 G T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.35;AMR_AF=0.47;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4323;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29420577 rs145383813 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0005;RSQ=0.8665;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29445458 rs3795850 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.71;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.25;LDAF=0.3951;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 29446184 rs2276550 C G 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.24;AMR_AF=0.41;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4016;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 29455267 rs2256740 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.54;AMR_AF=0.57;AN=2;ASN_AF=0.19;AVGPOST=0.9981;ERATE=0.0024;EUR_AF=0.69;LDAF=0.5070;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0085;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 29543663 rs2293564 T C 100 PASS AA=t;AC=2;AF=0.80;AFR_AF=0.43;AMR_AF=0.88;AN=2;ASN_AF=0.92;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.92;LDAF=0.8010;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 29940529 rs2246745 A T 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.17;AMR_AF=0.73;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.6435;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 30143499 rs4358080 G C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.79;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9803;ERATE=0.0008;EUR_AF=0.89;LDAF=0.8949;RSQ=0.9263;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-3.58,-0.51,-0.16 +2 30381505 rs1137288 T C 100 PASS AA=.;AC=2;AF=0.49;AFR_AF=0.30;AMR_AF=0.42;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4918;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 30975961 rs62142192 G T 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.10;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.0883;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 30976058 rs2926304 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.46;AN=2;ASN_AF=0.52;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3955;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 30980940 rs508405 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.95;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7684;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 30986989 rs579016 G T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.78;AMR_AF=0.94;AN=2;ASN_AF=0.88;AVGPOST=0.9952;ERATE=0.0019;EUR_AF=0.91;LDAF=0.8782;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 31009977 rs1915125 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.95;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=0.9924;ERATE=0.0026;EUR_AF=0.86;LDAF=0.9066;RSQ=0.9640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.87,-0.00 +2 31010212 rs13021213 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1157;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0258;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 31467351 rs2295473 T A 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.54;AMR_AF=0.72;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6531;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 31472288 rs61749077 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 31570376 rs1366813 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7861;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 31571241 rs13415401 G C 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.65;AMR_AF=0.74;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.81;LDAF=0.7793;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 31571786 rs1884725 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.74;AMR_AF=0.76;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8021;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 31588288 rs2365842 T A 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6910;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 31589847 rs2295475 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2665;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 31590785 rs761926 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.06;AMR_AF=0.34;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.32;LDAF=0.2683;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 31600146 rs10187719 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.80;AMR_AF=0.73;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7647;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 31609448 rs477626 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 32396320 rs79234407 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0100;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 32475109 rs455060 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.70;AMR_AF=0.65;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6028;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 32476390 rs408813 T G 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.60;AMR_AF=0.60;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5425;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 32481795 rs59966205 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.60;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.60;LDAF=0.5394;RSQ=0.9996;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 32667182 rs60197615 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 32667562 rs2276592 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.13;AMR_AF=0.22;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.24;LDAF=0.2856;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 32712875 rs2366891 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 32713706 rs2366894 A T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.67;AMR_AF=0.68;AN=2;ASN_AF=0.37;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5771;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 32822957 rs2710625 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.31;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3692;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 32855615 rs2710623 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9890;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 32959024 rs1551177 T C 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.42;AMR_AF=0.47;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4593;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 32961745 rs10200333 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 33036324 rs3731578 G A 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.50;AMR_AF=0.32;AN=2;ASN_AF=0.38;AVGPOST=0.9954;ERATE=0.0035;EUR_AF=0.38;LDAF=0.3966;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 33748913 rs6735997 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=0.9995;ERATE=0.0012;EUR_AF=0.21;LDAF=0.1340;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 33749145 rs41369046 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0119;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 33749457 rs76697275 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=0.9991;ERATE=0.0005;LDAF=0.0089;RSQ=0.9556;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 33764286 rs7592762 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9982;ERATE=0.0013;EUR_AF=0.38;LDAF=0.3603;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 33809826 rs11124323 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0160;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 36668395 rs2276673 T A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.22;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2926;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 36704144 rs848547 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.54;AMR_AF=0.71;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0039;EUR_AF=0.50;LDAF=0.5981;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 36739395 rs150637747 G C 100 PASS AA=G;AC=1;AF=0.0018;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0018;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +2 36806021 rs2072534 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.58;AMR_AF=0.32;AN=2;ASN_AF=0.62;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4837;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 36806051 rs2072533 A G 100 PASS AA=a;AC=1;AF=0.49;AFR_AF=0.60;AMR_AF=0.32;AN=2;ASN_AF=0.62;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4886;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 36810473 rs11691767 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=0.9968;ERATE=0.0022;EUR_AF=0.34;LDAF=0.2128;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 36810586 rs14291 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.46;AMR_AF=0.49;AN=2;ASN_AF=0.39;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.41;LDAF=0.4313;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 37000915 rs3770782 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.18;AMR_AF=0.03;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.1039;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 37010574 rs3821147 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.10;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0017;EUR_AF=0.66;LDAF=0.5747;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37041480 rs17441812 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.07;LDAF=0.0311;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37094945 rs2540923 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9278;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 37111045 rs2691106 T A 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.08;AMR_AF=0.54;AN=2;ASN_AF=0.34;AVGPOST=0.9989;ERATE=0.0009;EUR_AF=0.54;LDAF=0.3839;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37230734 rs17497654 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.28;AMR_AF=0.17;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1423;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 37306343 rs6743906 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9406;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 37319078 rs201830084 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +2 37402270 rs11569755 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2509;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37402373 rs11569758 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2513;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37410537 rs6544061 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.46;AMR_AF=0.42;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3718;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37438993 rs1137437 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.37;AN=2;ASN_AF=0.39;AVGPOST=0.9994;ERATE=0.0018;EUR_AF=0.43;LDAF=0.3783;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37454998 rs1803251 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.29;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0727;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 37456032 rs2098386 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9330;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 37458711 rs3213745 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.20;AMR_AF=0.34;AN=2;ASN_AF=0.42;AVGPOST=0.9992;ERATE=0.0017;EUR_AF=0.42;LDAF=0.3599;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37459308 rs2714473 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.20;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0489;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 37487317 rs2465486 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.24;AMR_AF=0.04;AN=2;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0607;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 37496741 rs181178848 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37518045 rs10177176 G C 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.20;AMR_AF=0.35;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.43;LDAF=0.3692;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 37579937 rs2302652 C T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.49;AMR_AF=0.29;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.08;LDAF=0.2700;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 37586680 rs45604037 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.35;AMR_AF=0.08;AN=2;AVGPOST=0.9921;ERATE=0.0051;EUR_AF=0.01;LDAF=0.0974;RSQ=0.9755;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 37586681 rs2302651 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.74;AMR_AF=0.49;AN=2;ASN_AF=0.38;AVGPOST=0.9940;ERATE=0.0042;EUR_AF=0.30;LDAF=0.4508;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 38178362 rs2197561 T C 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.31;AMR_AF=0.43;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.25;LDAF=0.3944;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 38179134 rs4670800 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 38202502 rs2044447 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3908;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 38298150 rs1056837 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.23;AMR_AF=0.69;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.63;LDAF=0.6220;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 38298169 rs4986888 G C 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0136;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 38298203 rs1056836 C G 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.19;AMR_AF=0.69;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6133;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 38301803 rs9341249 C G 100 PASS AA=c;AC=1;AF=0.07;AFR_AF=0.27;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9991;ERATE=0.0010;EUR_AF=0.0026;LDAF=0.0650;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 38302177 rs1056827 C A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.55;AMR_AF=0.29;AN=2;ASN_AF=0.17;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.30;LDAF=0.3228;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 38302390 rs10012 G C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.61;AMR_AF=0.29;AN=2;ASN_AF=0.18;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3358;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 38536626 rs2305243 T G 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.33;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=0.37;LDAF=0.2911;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 38537626 rs2305245 A C 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.82;AMR_AF=0.40;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4428;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 38604351 rs3731847 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.81;AMR_AF=0.41;AN=2;ASN_AF=0.20;AVGPOST=0.9955;ERATE=0.0007;EUR_AF=0.40;LDAF=0.4405;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.28,-0.00 +2 38809162 rs2253519 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.44;AMR_AF=0.14;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.14;LDAF=0.2395;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 38916970 rs6741892 A T 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.25;AMR_AF=0.09;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1507;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 38977371 rs3112183 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.38;AMR_AF=0.67;AN=2;ASN_AF=0.88;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6738;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 39025555 rs1530853 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.31;AMR_AF=0.59;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6065;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 39025632 rs1530852 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.30;AMR_AF=0.59;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6053;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 39030074 rs13029406 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.29;AMR_AF=0.58;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 39042639 rs3112138 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.72;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9209;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 39050141 rs3770681 A C 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.33;AMR_AF=0.60;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6188;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 39082344 rs7598922 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.31;AMR_AF=0.58;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6005;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 39090696 rs3099999 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9949;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 39224351 rs1454223 G T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.96;AMR_AF=0.92;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.94;LDAF=0.9112;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 39241174 rs73930394 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.09;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.0013;LDAF=0.0220;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 39281730 rs997344 G C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.98;AMR_AF=0.89;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8976;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.63,-0.00 +2 39507417 rs3755176 T A 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.25;AMR_AF=0.73;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.86;LDAF=0.6841;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 39514136 rs3755172 T C 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.25;AMR_AF=0.73;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.86;LDAF=0.6824;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 39526842 rs2111382 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9607;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +2 39553271 rs3815594 A G 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.64;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8080;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 39564620 rs1125839 C A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.81;AMR_AF=0.81;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8703;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 39583446 rs7422651 A G 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.36;AMR_AF=0.74;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.91;LDAF=0.7395;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 42396722 rs7233 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.69;AMR_AF=0.78;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6361;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 42510018 rs6736913 A G 100 PASS AA=G;AC=1;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9926;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 42515388 rs10202624 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8538;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 42515437 rs28651764 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3273;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 42556022 rs2286700 A T 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.06;AMR_AF=0.18;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.29;LDAF=0.2828;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 42588195 rs3764906 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.24;AMR_AF=0.20;AN=2;ASN_AF=0.54;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3427;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 42935979 rs4953578 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.82;AMR_AF=0.69;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.53;LDAF=0.6665;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 42990010 rs12617777 C A 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.48;AMR_AF=0.25;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.23;LDAF=0.3948;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 42990101 rs2278586 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.23;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3290;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 42990336 rs1992286 T G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.94;AMR_AF=0.74;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.7262;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 42990522 rs12712859 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3318;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 42991200 rs34142793 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0119;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 43452183 rs7933 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.82;AMR_AF=0.40;AN=2;ASN_AF=0.25;AVGPOST=0.9734;ERATE=0.0015;EUR_AF=0.36;LDAF=0.4411;RSQ=0.9650;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43514036 rs11900952 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.82;AMR_AF=0.41;AN=2;ASN_AF=0.26;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.36;LDAF=0.4435;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43754992 rs1491508 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.17;AN=2;ASN_AF=0.28;AVGPOST=0.9966;ERATE=0.0005;EUR_AF=0.22;LDAF=0.2322;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43797619 rs17031056 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.27;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2124;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43800174 rs11898207 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.26;AN=2;ASN_AF=0.29;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3242;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43801712 rs11899823 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.39;AMR_AF=0.26;AN=2;ASN_AF=0.29;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3236;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43804229 rs13021894 T C 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.49;AMR_AF=0.28;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3501;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43871983 rs12105773 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.82;AMR_AF=0.58;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5814;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43926943 rs7606783 T A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.78;AMR_AF=0.52;AN=2;ASN_AF=0.15;AVGPOST=0.9929;ERATE=0.0109;EUR_AF=0.53;LDAF=0.4852;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43931176 rs4953002 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.61;AMR_AF=0.47;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4351;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43937500 rs17414174 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.14;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1216;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43939525 rs13028613 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1385;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 43989525 rs76859622 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0242;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 43991357 rs7565517 A C 100 PASS AA=c;AC=1;AF=0.71;AFR_AF=0.95;AMR_AF=0.72;AN=2;ASN_AF=0.47;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7085;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 44101538 rs28517482 C T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=0.9972;ERATE=0.0129;EUR_AF=0.60;LDAF=0.7381;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 44104925 rs6544718 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8921;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44116836 rs2955280 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.91;AMR_AF=0.56;AN=2;ASN_AF=0.95;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.49;LDAF=0.7155;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44145374 rs7568481 G T 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.80;AMR_AF=0.53;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.6508;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44152180 rs4952694 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.91;AMR_AF=0.57;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.7162;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44172444 rs28394191 A C 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.40;LDAF=0.6070;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44173422 rs7594526 T G 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.65;AMR_AF=0.52;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.40;LDAF=0.6198;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44175366 rs72877186 A C 100 PASS AA=A;AC=2;AF=0.16;AFR_AF=0.35;AMR_AF=0.16;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1613;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44177701 rs58811869 G C 100 PASS AA=G;AC=2;AF=0.15;AFR_AF=0.34;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1499;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44201259 rs7593842 T C 100 PASS AA=T;AC=2;AF=0.16;AFR_AF=0.36;AMR_AF=0.16;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1613;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44209477 rs6741066 C T 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.65;AMR_AF=0.62;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5201;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44502788 rs3738985 A C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.83;AMR_AF=0.69;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.76;LDAF=0.6682;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44531484 rs3738984 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.55;AMR_AF=0.60;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5389;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44547574 rs698761 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.20;AMR_AF=0.57;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4582;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44548613 rs2241871 T C 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.77;AMR_AF=0.64;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5996;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 44556298 rs2033951 T C 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.67;AMR_AF=0.69;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.78;LDAF=0.6279;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 44565447 rs2289463 A T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.75;AMR_AF=0.64;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.65;LDAF=0.5896;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 45171842 rs62840660 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9469;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.81,-0.01 +2 45640334 rs3755072 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.04;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1417;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 45778459 rs3755081 C T 100 PASS AA=C;AC=2;AF=0.15;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1518;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 45879610 rs637909 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.87;AMR_AF=0.84;AN=2;ASN_AF=0.87;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.83;LDAF=0.8477;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +2 46207567 rs2249505 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.02;AMR_AF=0.35;AN=2;ASN_AF=0.59;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2916;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 46234568 rs10188306 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.14;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1819;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 46234762 rs77951226 A G 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 46603747 rs61757375 G A 100 PASS AA=G;AC=1;AF=0.0014;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 46607548 rs184760160 G A 100 PASS AA=G;AC=1;AF=0.0037;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0037;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 46739157 rs3814045 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.35;AMR_AF=0.48;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4547;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 46803354 rs41281473 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0096;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 46839477 rs1824050 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.05;AMR_AF=0.30;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1813;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 46986416 rs6738426 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.41;AN=2;ASN_AF=0.09;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2420;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-1.38,-0.02,-5.00 +2 46987300 rs3768720 T G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.89;AMR_AF=0.79;AN=2;ASN_AF=0.52;AVGPOST=0.9972;ERATE=0.0048;EUR_AF=0.59;LDAF=0.6758;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-1.53,-0.01,-5.00 +2 47222236 rs114356926 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0256;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 47233048 rs13407983 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.31;AMR_AF=0.14;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1453;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 47233749 rs13424540 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.34;AMR_AF=0.15;AN=2;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.15;LDAF=0.1526;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 47277043 rs2304287 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2158;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +2 47277207 rs3816066 C A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.62;AMR_AF=0.46;AN=2;ASN_AF=0.65;AVGPOST=0.9823;ERATE=0.0077;EUR_AF=0.33;LDAF=0.5044;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 47277208 rs60758066 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.63;AMR_AF=0.46;AN=2;ASN_AF=0.66;AVGPOST=0.9842;ERATE=0.0120;EUR_AF=0.33;LDAF=0.5049;RSQ=0.9795;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 47380145 rs17036300 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.27;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1188;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 47380203 rs815809 T C 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.25;AMR_AF=0.66;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6707;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 47388844 rs2016682 T C 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0220;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 47601106 rs1126497 T C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.89;AMR_AF=0.50;AN=2;ASN_AF=0.80;AVGPOST=0.9993;ERATE=0.0012;EUR_AF=0.48;LDAF=0.6588;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 47630550 rs2303426 C G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.79;AMR_AF=0.49;AN=2;ASN_AF=0.79;AVGPOST=0.9939;ERATE=0.0010;EUR_AF=0.43;LDAF=0.6151;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.56,-0.01 +2 48018081 rs1800932 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.08;AMR_AF=0.14;AN=2;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1041;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 48023115 rs1800935 T C 100 PASS AA=t;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.22;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1746;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 48030838 rs2020911 A T 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.14;AMR_AF=0.42;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.36;LDAF=0.3958;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 48033551 rs3136367 C G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.93;AMR_AF=0.64;AN=2;ASN_AF=0.89;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.70;LDAF=0.7886;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 48602252 rs17855177 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2930;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48681850 rs148229375 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.08;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0206;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48713777 rs33994624 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0724;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 48725610 rs3811519 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.53;AMR_AF=0.49;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4406;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 48725757 rs145955884 T C 100 PASS AA=T;AC=1;AF=0.0037;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48737115 rs150611634 G A 100 PASS AA=A;AC=1;AF=0.0041;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0041;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48737165 rs34242961 G C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.07;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0179;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48807796 rs17039250 A C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.29;AMR_AF=0.28;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3309;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48807976 rs3828340 T C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.29;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3405;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48808152 rs940389 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.31;AMR_AF=0.29;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3515;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48808594 rs3749142 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.30;AMR_AF=0.39;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4119;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48808882 rs3749144 T A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3365;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48808898 rs3749145 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.29;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3355;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48809450 rs146130623 G T 100 PASS AA=G;AC=1;AF=0.0023;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0023;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 48809593 rs3792234 G T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.30;AMR_AF=0.39;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4101;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48848295 rs13035544 C T 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=0.9983;ERATE=0.0010;EUR_AF=0.20;LDAF=0.1334;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 48873582 rs12988176 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.24;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1027;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 48898798 rs3920390 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9881;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 48906625 rs1965508 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9885;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 48925746 rs6755901 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.87;AMR_AF=0.69;AN=2;ASN_AF=0.44;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.82;LDAF=0.7087;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 48950744 rs180853612 A G 100 PASS AA=A;AC=1;AF=0.0014;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0016;RSQ=0.9280;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 49189921 rs6166 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.58;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5980;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 49191041 rs6165 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.24;AMR_AF=0.58;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5142;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 49381585 rs1394205 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.29;AMR_AF=0.37;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3598;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 50692560 rs3213756 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.41;AVGPOST=0.9875;ERATE=0.0110;EUR_AF=0.30;LDAF=0.3119;RSQ=0.9798;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 51254901 rs1045874 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.47;AMR_AF=0.07;AN=2;ASN_AF=0.09;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.07;LDAF=0.1661;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +2 54587378 rs2280717 C G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.21;AMR_AF=0.16;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1175;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 54587596 rs2280718 C T 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.65;AMR_AF=0.74;AN=2;ASN_AF=0.69;AVGPOST=0.9986;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7274;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 54839276 rs3796014 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.98;AMR_AF=0.75;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7486;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 54844790 rs2229506 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.11;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1115;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 55201038 rs2255026 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.99;AMR_AF=0.81;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8410;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 55214618 rs2580769 A C 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.44;AMR_AF=0.70;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.74;LDAF=0.6746;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 55252214 rs13401937 T G 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.22;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1004;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55404794 rs14026 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.45;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.52;LDAF=0.5051;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 55404925 rs6545477 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.40;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1997;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55407754 rs6716066 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9744;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 55436934 rs9677948 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.40;AMR_AF=0.17;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.21;LDAF=0.2116;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55439963 rs2118283 C A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 55470115 rs11357 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.48;AMR_AF=0.74;AN=2;ASN_AF=0.64;AVGPOST=0.9984;ERATE=0.0024;EUR_AF=0.82;LDAF=0.6830;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 55471407 rs2589083 T C 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9557;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.26,-0.00 +2 55490819 rs1056445 G T 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.46;AMR_AF=0.74;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.6805;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 55576634 rs2589090 C T 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.66;AMR_AF=0.35;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.5448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 55582684 rs1437394 A T 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.37;AMR_AF=0.33;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.4758;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 55589434 rs3111412 T A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.63;AMR_AF=0.33;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.5284;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 55771050 rs3816489 C G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.54;AMR_AF=0.76;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.6462;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55771161 rs1045910 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.8345;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55844445 rs782594 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.47;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3641;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55883317 rs2627765 G T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.31;AMR_AF=0.52;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4005;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55889062 rs782604 G A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.8350;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55894247 rs782637 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.49;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.3780;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55899228 rs782631 A T 100 PASS AA=T;AC=1;AF=0.84;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.8359;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 55912120 rs782572 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.48;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.54;LDAF=0.3785;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 56098272 rs45535043 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0457;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 56420006 rs60028731 A T 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0860;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 56420296 rs75743618 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0859;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 56603118 rs72803075 C G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.05;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.25;LDAF=0.1812;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 58316814 rs1051061 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.09;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3401;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 58388696 rs848291 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.93;AMR_AF=0.61;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6728;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 60687959 rs7569946 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.93;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7979;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 61009909 rs10197672 C T 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.68;AMR_AF=0.50;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4593;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +2 61021349 rs11125855 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.58;AMR_AF=0.49;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.53;LDAF=0.4359;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 61108996 rs842650 A T 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.16;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9959;ERATE=0.0017;EUR_AF=0.09;LDAF=0.1243;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.42,-0.21,-2.15 +2 61121492 rs842644 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9710;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 61175312 rs12479056 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.57;AMR_AF=0.60;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5125;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 61235855 rs1182688 C A 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.33;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3656;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 61304271 rs1729659 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.40;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3775;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 61413723 rs1809028 A G 100 PASS AA=.;AC=2;AF=0.80;AFR_AF=0.98;AMR_AF=0.80;AN=2;ASN_AF=0.68;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.79;LDAF=0.8047;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 61415492 rs14170 A G 100 PASS AA=.;AC=2;AF=0.46;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.38;AVGPOST=0.9953;ERATE=0.0040;EUR_AF=0.50;LDAF=0.4598;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 61417617 rs777591 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.68;AVGPOST=0.9974;ERATE=0.0019;EUR_AF=0.65;LDAF=0.6470;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 61420140 rs11897723 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.36;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1514;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 61468761 rs72884996 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.26;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1340;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 61473445 rs78389654 T C 100 PASS AA=T;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0014;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.44 +2 61505622 rs115065092 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=0.9915;ERATE=0.0020;EUR_AF=0.01;LDAF=0.0116;RSQ=0.7126;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 61522123 rs13014347 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9904;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 61552484 rs2593624 T A 100 PASS AA=t;AC=1;AF=0.68;AFR_AF=0.78;AMR_AF=0.66;AN=2;ASN_AF=0.65;AVGPOST=0.9929;ERATE=0.0026;EUR_AF=0.66;LDAF=0.6815;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 61566536 rs17008405 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9986;ERATE=0.0014;EUR_AF=0.15;LDAF=0.1189;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 61575308 rs6722430 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9899;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 61749716 rs3732170 C T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.74;AMR_AF=0.59;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6595;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +2 62066927 rs4672457 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9790;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 62069358 rs11125895 T C 100 PASS AA=T;AC=2;AF=0.15;AFR_AF=0.09;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1516;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 62081012 rs4270331 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9785;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 62081217 rs1881616 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9782;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +2 62103327 rs115496486 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 62105986 rs78442748 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0334;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 62110571 rs12713451 G T 100 PASS AA=G;AC=2;AF=0.20;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2000;RSQ=0.9987;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.11,-0.00 +2 62362995 rs9096 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0645;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 62729674 rs4672527 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.86;AMR_AF=0.77;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8140;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 63486429 rs992214 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.93;AMR_AF=0.66;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.52;LDAF=0.7201;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 63609017 rs2138796 A T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5192;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 63631830 rs6724115 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1932;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 64085114 rs10183479 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8373;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 64174664 rs41291181 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.21;AN=2;ASN_AF=0.65;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2871;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 64327544 rs329498 G T 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.30;LDAF=0.3744;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 64327592 rs329497 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.30;LDAF=0.3698;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 64796844 rs141992828 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 64796847 rs2287532 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.26;AMR_AF=0.34;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2994;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 65217089 rs7559202 G C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.26;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1871;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.14 +2 65481008 rs268871 A C 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.81;AMR_AF=0.83;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8247;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 65488538 rs268862 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8459;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 65495887 rs268875 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.89;AMR_AF=0.83;AN=2;ASN_AF=0.70;AVGPOST=0.9825;ERATE=0.0124;EUR_AF=0.85;LDAF=0.8115;RSQ=0.9613;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.10,-0.00 +2 67630980 rs3770657 G A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.87;AMR_AF=0.73;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7203;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 67631831 rs61740794 G A 100 PASS AA=-;AC=1;AF=0.46;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4583;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 67632125 rs3770655 C T 100 PASS AA=T;AC=1;AF=0.73;AFR_AF=0.92;AMR_AF=0.74;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7312;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 67637196 rs1569 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9835;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 68270068 rs10444 A G 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.35;AMR_AF=0.12;AN=2;ASN_AF=0.30;AVGPOST=0.9898;ERATE=0.0312;EUR_AF=0.13;LDAF=0.2242;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.36,-0.00 +2 68358341 rs62145930 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.54;AMR_AF=0.49;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4758;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 68374629 rs200352366 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 68385097 rs2044693 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.98;AMR_AF=0.68;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7235;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 68388823 rs1137930 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3282;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 68415767 rs11692815 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.55;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4865;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 68546304 rs4671897 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.82;AMR_AF=0.51;AN=2;ASN_AF=0.11;AVGPOST=0.9920;ERATE=0.0011;EUR_AF=0.46;LDAF=0.4556;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.35,-0.41,-0.78 +2 68546374 rs4671898 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.11;AVGPOST=0.9952;ERATE=0.0007;EUR_AF=0.45;LDAF=0.3796;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.10,-0.68,-4.70 +2 68607947 rs3816281 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.27;AMR_AF=0.41;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0015;EUR_AF=0.28;LDAF=0.3989;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 68622914 rs1063479 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.94;AMR_AF=0.80;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.8309;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 68622952 rs1050181 G C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.51;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3779;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 68622990 rs6725743 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.38;AMR_AF=0.11;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1572;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69002281 rs11685672 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2098;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69040500 rs2280310 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2825;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 69043539 rs2271832 G C 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.58;AMR_AF=0.58;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6239;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69045158 rs10197806 C A 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.23;AMR_AF=0.27;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3323;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69049939 rs4241344 G T 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2541;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 69049941 rs10177248 T C 100 PASS AA=t;AC=1;AF=0.37;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3702;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69093312 rs2231344 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.30;AMR_AF=0.10;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1321;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 69409029 rs6749826 C A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.53;AMR_AF=0.47;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5398;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69573029 rs6722492 T C 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.86;AMR_AF=0.53;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6065;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 69586370 rs67760762 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.36;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2589;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69597209 rs75562034 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.03;LDAF=0.0138;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69614161 rs6720415 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.90;AMR_AF=0.53;AN=2;ASN_AF=0.45;AVGPOST=0.9947;ERATE=0.0006;EUR_AF=0.60;LDAF=0.6185;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +2 69659126 rs4453725 A T 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.19;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.42;LDAF=0.3104;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 69709919 rs6721259 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.19;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1335;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 69741801 rs6757825 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.15;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1330;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 69741854 rs6715776 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 70096862 rs114517801 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0114;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 70121197 rs2278934 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.50;AMR_AF=0.25;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3179;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 70162534 rs11126250 T G 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.84;AMR_AF=0.39;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5494;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 70188676 rs3796097 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.91;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=0.9926;ERATE=0.0004;EUR_AF=0.50;LDAF=0.6657;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 70524577 rs2618235 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.21;AN=2;ASN_AF=0.35;AVGPOST=0.9978;ERATE=0.0023;EUR_AF=0.31;LDAF=0.2660;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 70906115 rs2074815 C A 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.52;AMR_AF=0.32;AN=2;ASN_AF=0.35;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.28;LDAF=0.3594;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0127;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 70915134 rs2074820 C G 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.46;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3495;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71004492 rs56316086 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.26;LDAF=0.3140;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71004494 rs56135050 A T 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.04;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.27;LDAF=0.3167;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71012604 rs7566541 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.96;AMR_AF=0.67;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7835;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 71012734 rs7566476 C G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.88;AMR_AF=0.66;AN=2;ASN_AF=0.94;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.7509;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 71017516 rs12713717 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.35;AN=2;ASN_AF=0.63;AVGPOST=0.9890;ERATE=0.0009;EUR_AF=0.29;LDAF=0.3955;RSQ=0.9829;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.08 +2 71043461 rs722896 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.12;AMR_AF=0.34;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3441;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71044211 rs2075221 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0016;EUR_AF=0.38;LDAF=0.3517;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71163086 rs11681642 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.40;AMR_AF=0.31;AN=2;ASN_AF=0.36;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.46;LDAF=0.3951;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71163173 rs17720303 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.20;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1659;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71163225 rs759219 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.43;AMR_AF=0.31;AN=2;ASN_AF=0.36;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4022;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71190384 rs2072462 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.16;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4433;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 71205976 rs1115049 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.67;AMR_AF=0.60;AN=2;ASN_AF=0.48;AVGPOST=0.9969;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5757;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.10,-0.70,-5.00 +2 71211417 rs72832792 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1716;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71211815 rs3796098 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1662;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71220793 rs2276684 T G 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.23;LDAF=0.1714;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71221822 rs2302561 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.56;AMR_AF=0.43;AN=2;ASN_AF=0.20;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3563;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-3.66,-0.00,-5.00 +2 71351403 rs6748672 C A 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.22;AMR_AF=0.17;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1723;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71351487 rs11541017 G A 100 PASS AA=g;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.30;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2057;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71360282 rs13010513 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.19;AMR_AF=0.17;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1669;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71360723 rs1813159 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.80;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8888;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +2 71417065 rs357777 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.96;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9489;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 71417134 rs357776 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.36;AMR_AF=0.24;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2878;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 71631109 rs3732235 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1024;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71633275 rs3732233 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.21;AMR_AF=0.59;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4231;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71633389 rs6714975 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.58;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4324;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71654175 rs1804020 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.21;AMR_AF=0.26;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3446;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71654450 rs60163900 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1042;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71658541 rs11542286 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1015;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71661946 rs141620069 A T 100 PASS AA=A;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71742892 rs13428076 T C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1120;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71743376 rs11903960 T C 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0868;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71747899 rs12713756 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3775;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71755380 rs4852800 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.90;AMR_AF=0.73;AN=2;ASN_AF=0.19;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=0.84;LDAF=0.6702;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +2 71762232 rs4852801 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4767;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 71762413 rs61740288 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0105;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 71780215 rs2303596 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.19;AVGPOST=0.9981;ERATE=0.0007;EUR_AF=0.73;LDAF=0.5866;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 71780906 rs13424178 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0235;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +2 71795152 rs2288355 A T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.87;AMR_AF=0.57;AN=2;ASN_AF=0.14;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.66;LDAF=0.5542;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71838597 rs2303606 C A 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.37;AMR_AF=0.53;AN=2;ASN_AF=0.46;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.54;LDAF=0.4785;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 71871236 rs84182 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.93;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8460;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71891361 rs2303599 C T 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7465;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71901286 rs2559081 C T 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.55;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7326;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 71906171 rs1863812 T C 100 PASS AA=C;AC=1;AF=0.88;AFR_AF=0.98;AMR_AF=0.87;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8784;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 72374778 rs150322824 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.0035;AVGPOST=0.9957;ERATE=0.0009;LDAF=0.0111;RSQ=0.8331;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:0.950:-1.10,-0.04,-5.00 +2 72707874 rs653220 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.94;AMR_AF=0.23;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3300;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 72958333 rs61736520 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.58;AMR_AF=0.11;AN=2;ASN_AF=0.0035;AVGPOST=0.9971;ERATE=0.0023;EUR_AF=0.12;LDAF=0.1905;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 73339430 rs4143146 T G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.84;AVGPOST=0.9941;ERATE=0.0006;EUR_AF=0.86;LDAF=0.8741;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.15,-0.03 +2 73339708 rs1864488 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.24;AMR_AF=0.67;AN=2;ASN_AF=0.44;AVGPOST=0.9924;ERATE=0.0007;EUR_AF=0.70;LDAF=0.5239;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +2 73450139 rs17008885 A T 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2912;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 73650122 rs1881246 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.10;AMR_AF=0.59;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5389;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 73651967 rs3813227 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.87;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3378;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73675669 rs2037814 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.92;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8624;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 73675844 rs7598901 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.09;AMR_AF=0.59;AN=2;ASN_AF=0.75;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5367;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 73677833 rs6546836 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.79;AMR_AF=0.34;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.23;LDAF=0.3192;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73677898 rs6546837 G C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.87;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3372;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73678616 rs28730853 G T 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0311;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73679280 rs6546838 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.85;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3340;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73679440 rs17009061 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0306;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73679990 rs6724782 T A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.86;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3368;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73680508 rs6546839 G C 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.86;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3369;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73717567 rs2056486 G T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.85;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3341;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73717656 rs10193972 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.85;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3338;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73784477 rs34617744 T A 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73828310 rs1320374 T C 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.14;AMR_AF=0.69;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5562;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 73828402 rs201728850 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 73828538 rs1052161 G A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.25;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5831;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 73829372 rs1052162 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.81;AMR_AF=0.33;AN=2;ASN_AF=0.01;AVGPOST=0.9962;ERATE=0.0032;EUR_AF=0.24;LDAF=0.3221;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73830454 rs116733486 A T 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9961;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0526;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73830455 rs114375547 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9958;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0525;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73830458 rs17848872 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0538;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73868366 rs72635973 G T 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0311;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73868538 rs72635972 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.05;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0316;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 73957124 rs7210 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.32;AMR_AF=0.61;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5891;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +2 73994074 rs2567599 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.90;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0012;EUR_AF=0.93;LDAF=0.9457;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 74007136 rs2272051 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.45;AMR_AF=0.62;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6218;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 74128391 rs1721241 G C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.72;AMR_AF=0.83;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7313;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74128433 rs1050146 C T 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.72;AMR_AF=0.83;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7304;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74129474 rs1726025 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.51;AMR_AF=0.67;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74129664 rs1653256 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.51;AMR_AF=0.67;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5754;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74135797 rs702461 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.43;AMR_AF=0.72;AN=2;ASN_AF=0.51;AVGPOST=0.9979;ERATE=0.0034;EUR_AF=0.70;LDAF=0.5941;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74135898 rs756128 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.43;AMR_AF=0.72;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5937;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74140581 rs891699 A T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6096;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74140781 rs146450506 G T 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0231;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74140789 rs891698 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6093;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74185876 rs4777 A T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.51;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5375;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 74274415 rs61742889 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.11;AN=2;AVGPOST=0.9977;ERATE=0.0005;LDAF=0.0194;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74450125 rs6745054 T C 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.66;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.08;LDAF=0.3657;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74454291 rs113170181 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.39;AMR_AF=0.12;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1438;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74460685 rs3796109 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.20;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1107;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74477427 rs75131120 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.20;AMR_AF=0.15;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1067;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74481817 rs200346496 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74531583 rs3771737 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.36;AMR_AF=0.11;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.2011;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74589288 rs2268427 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.25;AMR_AF=0.11;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1796;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74589897 rs2268426 G T 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.25;AMR_AF=0.11;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1785;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74682512 rs2268417 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.86;AMR_AF=0.27;AN=2;ASN_AF=0.83;AVGPOST=0.9948;ERATE=0.0021;EUR_AF=0.15;LDAF=0.5085;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74687550 rs8469 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.81;AMR_AF=0.25;AN=2;ASN_AF=0.82;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.15;LDAF=0.4901;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.93 +2 74690039 rs2268416 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.85;AMR_AF=0.27;AN=2;ASN_AF=0.82;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.15;LDAF=0.5029;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74690378 rs1063588 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.79;AMR_AF=0.26;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.4868;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74699778 rs1047911 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.80;AMR_AF=0.27;AN=2;ASN_AF=0.83;AVGPOST=0.9929;ERATE=0.0092;EUR_AF=0.16;LDAF=0.5000;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74710491 rs6707475 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.89;AMR_AF=0.27;AN=2;ASN_AF=0.82;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.15;LDAF=0.5117;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74719910 rs17009980 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.82;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.15;LDAF=0.3263;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74720002 rs4853026 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9917;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 74725144 rs6546908 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.94;LDAF=0.9657;RSQ=0.9744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 74725178 rs17009998 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.82;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3286;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74746322 rs6546909 A T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.80;AMR_AF=0.27;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.4900;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74761422 rs6707302 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.89;AMR_AF=0.31;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.5177;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74763258 rs17010022 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0978;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74763594 rs190924518 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 74900738 rs2075213 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.09;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0016;EUR_AF=0.01;LDAF=0.1236;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 74901602 rs363608 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.47;AMR_AF=0.23;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.14;LDAF=0.4054;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 74902872 rs363609 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.84;AMR_AF=0.27;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.14;LDAF=0.4966;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 75105798 rs604112 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9889;RSQ=0.9814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 75115108 rs10194657 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.48;AMR_AF=0.52;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0020;EUR_AF=0.63;LDAF=0.5452;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 75425623 rs2024512 G A 100 PASS AA=g;AC=1;AF=0.53;AFR_AF=0.83;AMR_AF=0.45;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0019;EUR_AF=0.45;LDAF=0.5256;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 75425728 rs6715729 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.88;AMR_AF=0.48;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5461;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 75874390 rs2286239 G C 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.05;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=0.9961;ERATE=0.0006;EUR_AF=0.25;LDAF=0.1837;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +2 75881828 rs6759555 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.78;AMR_AF=0.45;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4918;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 75882399 rs17689863 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1696;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 75915035 rs1803196 C T 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.79;AMR_AF=0.45;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 75923413 rs7560262 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.81;AMR_AF=0.54;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5439;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 75928300 rs6547019 G T 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.78;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4899;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 79254261 rs452267 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.84;AMR_AF=0.88;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8501;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 79255426 rs383969 G C 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.84;AMR_AF=0.88;AN=2;ASN_AF=0.89;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.81;LDAF=0.8498;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 79312414 rs3739144 G A 100 PASS AA=N;AC=2;AF=0.64;AFR_AF=0.49;AMR_AF=0.72;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6362;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 79314081 rs6738657 T C 100 PASS AA=t;AC=1;AF=0.22;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2186;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 79314094 rs6723688 G T 100 PASS AA=N;AC=2;AF=0.67;AFR_AF=0.57;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6709;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 79350347 rs12228 A G 100 PASS AA=N;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 80101511 rs76283151 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.33;AVGPOST=0.9930;ERATE=0.0016;EUR_AF=0.03;LDAF=0.1582;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 80529956 rs6733871 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.48;AMR_AF=0.28;AN=2;ASN_AF=0.55;AVGPOST=0.9968;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3668;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 80801346 rs17019360 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.40;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2875;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 84800605 rs11891970 C A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.85;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9420;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 85051122 rs1649292 G A 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.18;AN=2;ASN_AF=0.13;AVGPOST=0.9980;ERATE=0.0034;EUR_AF=0.15;LDAF=0.1585;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 85066245 rs736711 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1125;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 85133216 rs7148 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0412;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 85549868 rs4240199 A G 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7669;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 85549874 rs3637 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9939;ERATE=0.0038;EUR_AF=0.36;LDAF=0.3629;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 85553784 rs1044973 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.54;AMR_AF=0.68;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6417;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 85554080 rs4247303 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.35;AMR_AF=0.63;AN=2;ASN_AF=0.85;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5744;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 85570942 rs9309620 G C 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.45;AMR_AF=0.63;AN=2;ASN_AF=0.65;AVGPOST=0.9306;ERATE=0.0775;EUR_AF=0.59;LDAF=0.5751;RSQ=0.8596;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.02,-0.00 +2 85571710 rs4832171 A G 100 PASS AA=a;AC=2;AF=0.88;AFR_AF=0.99;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8834;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 85573049 rs908304 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.14;AMR_AF=0.54;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3847;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 85595818 rs955592 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0343;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 85622059 rs6886 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.79;AMR_AF=0.44;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.67;LDAF=0.6131;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 85625222 rs6885 T G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.44;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2399;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 85769246 rs1078005 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 85781318 rs1254896 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 85788140 rs1254898 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1878;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 85820046 rs4832178 A T 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0096;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86259443 rs2276626 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.83;AMR_AF=0.52;AN=2;ASN_AF=0.36;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5691;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 86272758 rs1561328 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.49;AMR_AF=0.08;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1911;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 86302103 rs3815840 A G 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.67;AMR_AF=0.88;AN=2;ASN_AF=0.77;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8082;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-3.42,-0.00,-5.00 +2 86305123 rs2288117 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.75;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9001;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 86315741 rs2288120 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.28;AMR_AF=0.84;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.84;LDAF=0.6686;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86317037 rs4832242 G C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.49;AMR_AF=0.87;AN=2;ASN_AF=0.77;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7572;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86332809 rs4832245 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.36;AMR_AF=0.85;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.84;LDAF=0.6864;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86346180 rs2303339 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.17;AMR_AF=0.04;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0987;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 86359405 rs1559515 G T 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.36;AMR_AF=0.85;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.84;LDAF=0.6865;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86360573 rs2241437 T G 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0745;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 86385886 rs6739460 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.91;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9534;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.18,-0.00 +2 86400824 rs1050301 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.01;AMR_AF=0.42;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3314;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86406556 rs17027011 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.04;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1125;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 86479035 rs12988844 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.09;AMR_AF=0.58;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4717;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86481835 rs2276625 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.16;AMR_AF=0.57;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4547;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86509267 rs1863058 G A 100 PASS AA=g;AC=1;AF=0.44;AFR_AF=0.10;AMR_AF=0.57;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4367;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86509388 rs1863059 T G 100 PASS AA=t;AC=1;AF=0.58;AFR_AF=0.57;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5809;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 86683642 rs2030259 A G 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8528;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 86691250 rs12714187 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.93;AMR_AF=0.72;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.78;LDAF=0.8528;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 86707313 rs61748134 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.02;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0265;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 86707504 rs4832290 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.85;AMR_AF=0.73;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0021;EUR_AF=0.80;LDAF=0.8398;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 86737649 rs966477 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.57;AMR_AF=0.64;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.65;LDAF=0.7103;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 86850022 rs396354 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.83;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7979;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +2 86979093 rs10186663 G A 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.62;AMR_AF=0.68;AN=2;ASN_AF=0.91;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7181;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 87042825 rs35555413 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1267;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 87069431 rs4514875 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.58;AMR_AF=0.52;AN=2;ASN_AF=0.64;AVGPOST=0.9054;ERATE=0.0236;EUR_AF=0.58;LDAF=0.5726;RSQ=0.8009;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.03,-1.18 +2 87073852 rs75893774 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1804;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +2 87073921 rs115819014 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=0.9969;ERATE=0.0007;EUR_AF=0.22;LDAF=0.1803;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.39,-0.23 +2 88383970 rs61748137 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0293;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 88387403 rs1542088 C A 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.12;AMR_AF=0.60;AN=2;ASN_AF=0.93;AVGPOST=0.9963;ERATE=0.0038;EUR_AF=0.53;LDAF=0.5530;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.62 +2 88396080 rs2919883 A C 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3094;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 88396120 rs2919882 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3093;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 88396123 rs2970912 C G 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3094;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 88396174 rs2919881 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3093;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 88424066 rs2241883 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2643;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 88472791 rs4129190 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.91;AMR_AF=0.78;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8633;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 88472925 rs4129189 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.30;AMR_AF=0.21;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2335;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 88474370 rs2139100 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.91;AMR_AF=0.79;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8652;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 88484808 rs2292869 C A 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.55;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2098;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 88485392 rs1878810 G C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.93;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8707;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.56,-0.00 +2 88874891 rs1805165 C A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.98;AMR_AF=0.66;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7120;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 88882942 rs6750998 T A 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1966;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 88895123 rs13045 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.89;AMR_AF=0.60;AN=2;ASN_AF=0.48;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6530;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 88991444 rs201068417 C T 100 PASS AA=C;AC=1;AF=0.0032;AMR_AF=0.01;AN=2;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0032;RSQ=0.6463;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.650:-0.05,-0.94,-5.00 +2 89049517 rs142341148 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0117;RSQ=0.8686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 95537622 rs11164112 A G 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.50;AMR_AF=0.38;AN=2;ASN_AF=0.46;AVGPOST=0.9759;ERATE=0.0049;EUR_AF=0.32;LDAF=0.4056;RSQ=0.9626;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-1.25,-0.03,-5.00 +2 95540540 rs76696553 C T 100 PASS AA=.;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9050;ERATE=0.0849;EUR_AF=0.18;LDAF=0.2177;RSQ=0.7454;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +2 95945568 rs7585914 G A 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.87;AMR_AF=0.89;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7814;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 95947085 rs12992066 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.90;AMR_AF=0.90;AN=2;ASN_AF=0.69;AVGPOST=0.9993;ERATE=0.0016;EUR_AF=0.75;LDAF=0.7929;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 95947099 rs72819488 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.0041;AMR_AF=0.07;AN=2;ASN_AF=0.20;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1152;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 95952177 rs7602232 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9886;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +2 95963242 rs2248415 C G 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.87;AMR_AF=0.69;AN=2;ASN_AF=0.60;AVGPOST=0.9918;ERATE=0.0008;EUR_AF=0.74;LDAF=0.7209;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-1.33,-0.02,-5.00 +2 96012907 rs7602807 C G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.90;AMR_AF=0.68;AN=2;ASN_AF=0.59;AVGPOST=0.9966;ERATE=0.0007;EUR_AF=0.75;LDAF=0.7306;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 96789787 rs893173 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.25;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3574;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 96795608 rs1657502 T G 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.26;AMR_AF=0.42;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4186;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 96795714 rs749459 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.26;AMR_AF=0.42;AN=2;ASN_AF=0.60;AVGPOST=0.9985;ERATE=0.0017;EUR_AF=0.37;LDAF=0.4157;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 96795857 rs749458 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.99;AMR_AF=0.84;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.78;LDAF=0.8926;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 96798510 rs1168966 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.21;AMR_AF=0.41;AN=2;ASN_AF=0.61;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4055;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 96858914 rs997548 A G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1254;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 96859034 rs997547 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.0896;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 96861159 rs2276650 C G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1216;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 96919642 rs3852673 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1142;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 96943230 rs188004395 G C 100 PASS AA=g;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0004;LDAF=0.0019;RSQ=0.9535;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 96943473 rs3214063 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.27;AMR_AF=0.32;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.34;LDAF=0.2993;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 96944553 rs772175 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.30;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3055;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 96952833 rs3171927 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.25;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2035;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 96993757 rs2279105 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.22;AMR_AF=0.31;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2660;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 96993884 rs1048675 A G 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2874;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 97020049 rs3731935 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.24;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1987;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 97020170 rs3731936 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.24;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1988;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 97030247 rs2305935 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2893;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 97490752 rs4077343 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9939;ERATE=0.0059;EUR_AF=0.07;LDAF=0.0891;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 97493877 rs1320149 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.84;AMR_AF=0.11;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.09;LDAF=0.2742;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 97508082 rs58147284 G C 100 PASS AA=c;AC=1;AF=0.19;AFR_AF=0.58;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1908;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.18 +2 98273290 rs11547232 C T 100 PASS AA=.;AC=1;AF=0.40;AFR_AF=0.12;AMR_AF=0.46;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.63;LDAF=0.3981;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +2 98273661 rs2290124 A G 100 PASS AA=.;AC=1;AF=0.61;AFR_AF=0.72;AMR_AF=0.58;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6088;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98274527 rs1042705 G C 100 PASS AA=.;AC=1;AF=0.61;AFR_AF=0.72;AMR_AF=0.58;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6088;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98275354 rs11692435 G A 100 PASS AA=.;AC=1;AF=0.04;AMR_AF=0.05;AN=2;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0405;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98354139 rs17488834 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.01;AMR_AF=0.34;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2155;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98354511 rs3192177 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.1860;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.11,-0.66 +2 98355990 rs11678558 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.22;AN=2;ASN_AF=0.01;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.38;LDAF=0.1863;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98378573 rs201313610 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 98409046 rs12995673 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.21;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.1900;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 98413781 rs2305143 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2902;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 98449796 rs6721250 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 98525107 rs1317178 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.91;AMR_AF=0.59;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6513;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98797446 rs11692266 A T 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.08;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0348;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98844674 rs7601049 C G 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.64;AMR_AF=0.55;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6389;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98853173 rs11889349 G A 100 PASS AA=g;AC=1;AF=0.60;AFR_AF=0.62;AMR_AF=0.50;AN=2;ASN_AF=0.77;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.52;LDAF=0.6030;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 98866775 rs6747410 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1307;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 98887116 rs4851955 G C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.37;AMR_AF=0.49;AN=2;ASN_AF=0.23;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.48;LDAF=0.3945;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 98928494 rs7587534 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.97;LDAF=0.9873;RSQ=0.9252;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.00,-0.05 +2 99149946 rs2278211 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2263;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 99170912 rs150565121 G A 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0028;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99172244 rs2278206 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.30;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2751;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.70 +2 99193496 rs2230388 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.27;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2522;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 99226173 rs1062847 T A 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.26;AMR_AF=0.30;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2788;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 99274653 rs2271670 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.88;AMR_AF=0.57;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.6056;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99439603 rs149622421 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9961;ERATE=0.0005;EUR_AF=0.05;LDAF=0.0311;RSQ=0.9493;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-0.17,-0.49,-5.00 +2 99636701 rs190679885 A T 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99688387 rs149619654 G C 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99695097 rs62156364 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.29;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.1984;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 99767073 rs139891421 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99804642 rs10865030 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.70;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.86;LDAF=0.8661;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +2 99812070 rs1044575 G A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.49;AMR_AF=0.65;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0005;EUR_AF=0.62;LDAF=0.6642;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99812108 rs7572157 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.08;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0270;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99976813 rs41280587 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0120;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99980811 rs117138860 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0119;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 99995517 rs11896520 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.32;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.28;LDAF=0.1789;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 99995804 rs1376443 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.76;AMR_AF=0.71;AN=2;ASN_AF=0.37;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5929;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 100010810 rs3197957 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0119;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 100019496 rs2305354 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.76;AMR_AF=0.70;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.58;LDAF=0.5859;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 100020945 rs3087401 C T 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0256;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 100021184 rs2290261 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.41;AMR_AF=0.61;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4301;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 100022617 rs13394927 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.35;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 100022772 rs717454 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.41;AMR_AF=0.61;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4301;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 100055506 rs3087386 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.72;AMR_AF=0.70;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5736;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 100058870 rs3087403 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.31;AMR_AF=0.34;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2382;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 100218080 rs4851214 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.03;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9915;ERATE=0.0005;EUR_AF=0.29;LDAF=0.2535;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 100343557 rs4851223 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 100915772 rs4851287 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.85;AMR_AF=0.68;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7824;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 100916306 rs2033748 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.85;AMR_AF=0.68;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7806;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 100916315 rs11123823 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.49;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3443;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 100917109 rs13006224 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.03;AMR_AF=0.42;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4415;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 100938481 rs74177696 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.12;AMR_AF=0.44;AN=2;ASN_AF=0.73;AVGPOST=0.9553;ERATE=0.0023;EUR_AF=0.48;LDAF=0.4622;RSQ=0.9395;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.10,-0.70 +2 101010082 rs3748930 G C 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.62;AMR_AF=0.53;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.50;LDAF=0.6078;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101014363 rs2241809 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.03;AMR_AF=0.43;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4329;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 101096960 rs1519654 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.92;AMR_AF=0.65;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.7584;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101186088 rs1052117 C T 100 PASS AA=.;AC=2;AF=0.61;AFR_AF=0.61;AMR_AF=0.42;AN=2;ASN_AF=0.98;AVGPOST=0.9926;ERATE=0.0082;EUR_AF=0.43;LDAF=0.6096;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101541798 rs356651 C T 100 PASS AA=T;AC=1;AF=0.90;AFR_AF=0.91;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.83;LDAF=0.9037;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 101584895 rs2289950 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.28;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2678;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 101587455 rs1562313 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.31;AMR_AF=0.12;AN=2;ASN_AF=0.25;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.24;LDAF=0.2370;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 101591304 rs2305160 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.93;AMR_AF=0.68;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.67;LDAF=0.7678;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101591443 rs2305159 A C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.61;AMR_AF=0.38;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.5101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101598677 rs2278727 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.31;AVGPOST=0.9990;ERATE=0.0012;EUR_AF=0.27;LDAF=0.2782;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 101619283 rs2278724 C G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8508;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 101869588 rs2272320 G T 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.22;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=0.9895;ERATE=0.0019;EUR_AF=0.45;LDAF=0.4231;RSQ=0.9829;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.42,-0.21 +2 101874442 rs6757365 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.24;AMR_AF=0.46;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4273;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101881549 rs3768995 A T 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.23;AMR_AF=0.45;AN=2;ASN_AF=0.54;AVGPOST=0.9919;ERATE=0.0100;EUR_AF=0.44;LDAF=0.4211;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +2 101898412 rs13151 G C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.64;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8579;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101911385 rs3828194 A G 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.26;AMR_AF=0.47;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4318;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101967346 rs6543032 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.38;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6788;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 101967552 rs199840530 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 102788409 rs2041747 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9840;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 102842467 rs2302620 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.21;AMR_AF=0.30;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1915;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 102851708 rs2302612 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.53;AMR_AF=0.38;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3153;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 102955468 rs1041973 C A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.60;AMR_AF=0.21;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2898;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 102968007 rs4988956 G A 100 PASS AA=.;AC=1;AF=0.40;AFR_AF=0.76;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4032;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 102968075 rs4988957 T C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.76;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4031;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 102968211 rs10192036 C A 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.57;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=0.9896;ERATE=0.0016;EUR_AF=0.33;LDAF=0.3242;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 102968212 rs10204137 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.57;AMR_AF=0.26;AN=2;ASN_AF=0.14;AVGPOST=0.9906;ERATE=0.0038;EUR_AF=0.32;LDAF=0.3211;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 102968285 rs4988958 T C 100 PASS AA=N;AC=1;AF=0.40;AFR_AF=0.76;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4031;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 102968356 rs10192157 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.76;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4031;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 102968362 rs10206753 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.76;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4031;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 103010912 rs1420096 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.77;AMR_AF=0.36;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4647;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 103059613 rs1558651 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 103063520 rs11465723 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.07;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0920;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 103095404 rs11692304 G A 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.29;AMR_AF=0.38;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3720;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 103136309 rs1403550 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.96;AMR_AF=0.79;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7783;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 103136446 rs1403551 T G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.79;AMR_AF=0.78;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7390;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 103141447 rs2015478 A G 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.75;AMR_AF=0.71;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6612;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 103141651 rs1024798 G C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.97;AMR_AF=0.80;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7765;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 103149100 rs1014286 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.70;AMR_AF=0.70;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6482;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 103149162 rs2008159 A G 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.70;AMR_AF=0.70;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6482;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 103149182 rs2008157 A G 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.70;AMR_AF=0.70;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6482;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 103324575 rs17833353 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1910;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 103378857 rs2540298 C G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.39;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4611;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 103431404 rs887987 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9894;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 105654716 rs3739160 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.58;AMR_AF=0.43;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5361;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-3.74,-0.00,-5.00 +2 105665808 rs17634737 C T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.22;AMR_AF=0.26;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2025;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 105705507 rs11538198 C T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1819;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 105709023 rs6543282 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9768;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 105713697 rs15567 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1819;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 105716266 rs9066 A G 100 PASS AA=a;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1805;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 105885961 rs2241797 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.49;AMR_AF=0.62;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5099;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 105889349 rs11676273 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1389;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 105956244 rs185242233 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.8760;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 105977761 rs11124029 G A 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.09;AMR_AF=0.18;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1293;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 105979730 rs2278502 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.19;AMR_AF=0.31;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2875;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 106690542 rs35317173 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.36;LDAF=0.2221;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 106742139 rs4851925 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9652;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.41,-0.00 +2 106742177 rs3739137 T A 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.68;AMR_AF=0.78;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7646;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 107032279 rs6543411 T C 100 PASS AA=.;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.96;AVGPOST=0.9284;ERATE=0.0135;EUR_AF=0.75;LDAF=0.8002;RSQ=0.8602;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.92,-0.06 +2 107073469 rs76857936 T A 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.66;AMR_AF=0.74;AN=2;ASN_AF=0.96;AVGPOST=0.9622;ERATE=0.0057;EUR_AF=0.70;LDAF=0.7553;RSQ=0.9308;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-3.55,-0.50,-0.17 +2 107073501 rs72627454 C T 100 PASS AA=.;AC=2;AF=0.77;AFR_AF=0.66;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=0.9734;ERATE=0.0043;EUR_AF=0.71;LDAF=0.7670;RSQ=0.9484;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-3.08,-0.47,-0.18 +2 107423188 rs1470591 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.18;AMR_AF=0.33;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2601;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 107423395 rs1470590 T G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.42;AMR_AF=0.48;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4274;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 107448988 rs12623034 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.0041;AMR_AF=0.14;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1632;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 107450525 rs12615112 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.16;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.2294;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 107450589 rs3796111 C T 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.39;AMR_AF=0.27;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3364;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 107460474 rs12473361 T G 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2911;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 108475958 rs142985549 A G 100 PASS AA=-;AC=1;AF=0.52;AFR_AF=0.47;AMR_AF=0.52;AN=2;ASN_AF=0.36;AVGPOST=0.9661;ERATE=0.0062;EUR_AF=0.68;LDAF=0.5159;RSQ=0.9503;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.300:-5.00,-1.63,-0.01 +2 108479432 rs200501106 G A 100 PASS AA=-;AC=1;AF=0.44;AFR_AF=0.43;AMR_AF=0.46;AN=2;ASN_AF=0.31;AVGPOST=0.8627;ERATE=0.0323;EUR_AF=0.55;LDAF=0.4328;RSQ=0.7435;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.250:-5.00,-0.61,-0.12 +2 108487330 rs148409227 A G 100 PASS AA=-;AC=1;AF=0.53;AFR_AF=0.49;AMR_AF=0.53;AN=2;ASN_AF=0.36;AVGPOST=0.9594;ERATE=0.0011;EUR_AF=0.67;LDAF=0.5197;RSQ=0.9404;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-0.12,-0.61,-4.00 +2 108496435 rs832352 T A 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.50;AMR_AF=0.52;AN=2;ASN_AF=0.34;AVGPOST=0.9370;ERATE=0.0087;EUR_AF=0.67;LDAF=0.5189;RSQ=0.9035;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.06 +2 108608648 rs1013940 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0940;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 108618514 rs3731684 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.19;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1645;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 108618540 rs3731683 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.63;AMR_AF=0.46;AN=2;ASN_AF=0.28;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.38;LDAF=0.4224;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 108863767 rs9308806 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8414;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 108875198 rs2219078 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.30;AMR_AF=0.37;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3940;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 108875244 rs6722745 T C 100 PASS AA=N;AC=2;AF=0.53;AFR_AF=0.65;AMR_AF=0.46;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.5242;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 109089404 rs2243888 C G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.56;AMR_AF=0.70;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7024;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 109092121 rs3213886 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.15;AMR_AF=0.55;AN=2;ASN_AF=0.88;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4869;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 109099477 rs2577613 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.56;AMR_AF=0.70;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7024;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +2 109099572 rs2718698 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9975;RSQ=0.9553;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 109103108 rs3754925 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.16;AMR_AF=0.55;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4927;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 109106381 rs12104502 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.20;AMR_AF=0.55;AN=2;ASN_AF=0.88;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5029;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 109371576 rs183341856 A G 100 PASS AA=a;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9910;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0225;RSQ=0.8321;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-2.27,-0.01,-1.66 +2 109381927 rs200526519 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.18;AVGPOST=0.8395;ERATE=0.0718;EUR_AF=0.15;LDAF=0.2198;RSQ=0.5505;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-1.98,-0.00,-5.00 +2 109389463 rs826580 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 109429146 rs975597 T A 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.24;AMR_AF=0.77;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6778;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 109513321 rs7607563 C A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.75;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9035;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.92,-0.00 +2 109513601 rs3827760 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.01;AMR_AF=0.32;AN=2;ASN_AF=0.88;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.01;LDAF=0.2890;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 109513654 rs12623957 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.39;AMR_AF=0.86;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7719;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 109522720 rs260639 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.33;AMR_AF=0.85;AN=2;ASN_AF=0.88;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.85;LDAF=0.7427;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 109526969 rs260632 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.87;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9296;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 109527373 rs260630 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9346;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 110373197 rs1560884 G A 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3270;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 110919321 rs2271244 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.22;AMR_AF=0.44;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3718;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 110922703 rs11675767 C T 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.54;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4518;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 111691147 rs3761711 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.21;AVGPOST=0.9992;ERATE=0.0003;LDAF=0.0810;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 111753449 rs3761707 G C 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.29;AMR_AF=0.38;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4246;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 111907691 rs724710 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.77;AMR_AF=0.52;AN=2;ASN_AF=0.88;AVGPOST=0.9993;ERATE=0.0065;EUR_AF=0.68;LDAF=0.7291;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112526866 rs137999262 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.16;AVGPOST=0.9896;ERATE=0.0010;EUR_AF=0.21;LDAF=0.1629;RSQ=0.9697;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.97,-0.46,-0.18 +2 112558479 rs200015423 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.19;AN=2;ASN_AF=0.15;AVGPOST=0.9765;ERATE=0.0009;EUR_AF=0.20;LDAF=0.1520;RSQ=0.9296;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:0.950:-0.48,-0.48,-0.48 +2 112560090 rs142711068 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.20;AMR_AF=0.23;AN=2;ASN_AF=0.15;AVGPOST=0.9791;ERATE=0.0012;EUR_AF=0.21;LDAF=0.1940;RSQ=0.9490;SNPSOURCE=EXOME;THETA=0.0076;VT=SNP GT:DS:GL 0|1:0.800:-0.19,-0.46,-2.32 +2 112605465 rs4848800 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9958;RSQ=0.9540;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 112625575 rs6742515 T C 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.40;AMR_AF=0.66;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5668;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 112705157 rs3761701 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.47;AMR_AF=0.59;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4757;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112705185 rs3761700 G T 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.49;AMR_AF=0.52;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4410;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112740373 rs1996323 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.65;AMR_AF=0.60;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112751928 rs7604639 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.65;AMR_AF=0.60;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112755001 rs2230515 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.65;AMR_AF=0.60;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5178;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112765973 rs1131244 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.47;AMR_AF=0.60;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4767;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112767483 rs11884693 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2185;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112776979 rs3811640 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.34;AMR_AF=0.32;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2687;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112813163 rs10176769 G A 100 PASS AA=g;AC=1;AF=0.23;AFR_AF=0.22;AMR_AF=0.28;AN=2;ASN_AF=0.14;AVGPOST=0.9916;ERATE=0.0006;EUR_AF=0.28;LDAF=0.2320;RSQ=0.9824;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +2 112834862 rs146130208 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 112847164 rs11123128 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.24;AMR_AF=0.37;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2801;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 112856165 rs4849007 C A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.72;AMR_AF=0.54;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.47;LDAF=0.6466;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113152247 rs201531763 C T 100 PASS AA=N;AC=1;AF=0.48;AFR_AF=0.23;AMR_AF=0.50;AN=2;ASN_AF=0.64;AVGPOST=0.6402;ERATE=0.0332;EUR_AF=0.51;LDAF=0.4956;RSQ=0.3742;SNPSOURCE=EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.100:-2.94,-0.46,-0.18 +2 113152295 rs200687738 C G 100 PASS AA=c;AC=1;AF=0.66;AFR_AF=0.58;AMR_AF=0.67;AN=2;ASN_AF=0.73;AVGPOST=0.6454;ERATE=0.0263;EUR_AF=0.66;LDAF=0.6121;RSQ=0.3558;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-2.96,-0.46,-0.18 +2 113277949 rs62157538 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.12;AMR_AF=0.09;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.20;LDAF=0.1928;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113305150 rs11123139 G C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.49;AMR_AF=0.56;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4931;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113305152 rs78234807 C T 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.01;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0266;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113308516 rs2304555 T A 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5416;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113308622 rs3816140 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5416;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113309473 rs1545133 C T 100 PASS AA=c;AC=1;AF=0.46;AFR_AF=0.36;AMR_AF=0.54;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4588;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113321900 rs41280572 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.05;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.46;LDAF=0.3341;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113326281 rs6746874 C G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.76;AMR_AF=0.80;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7477;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113326502 rs13010814 C T 100 PASS AA=T;AC=1;AF=0.75;AFR_AF=0.76;AMR_AF=0.80;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7473;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113346413 rs3748024 C G 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.38;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2871;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113346512 rs1047652 A C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.76;AMR_AF=0.78;AN=2;ASN_AF=0.64;AVGPOST=0.9993;ERATE=0.0008;EUR_AF=0.77;LDAF=0.7345;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113404708 rs4849091 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.14;AMR_AF=0.49;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3579;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113498566 rs3811040 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.06;AMR_AF=0.54;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4613;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113513504 rs4848298 A G 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.06;AMR_AF=0.54;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4607;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113513825 rs6731822 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.94;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9656;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113671378 rs3811046 G T 100 PASS AA=g;AC=2;AF=0.63;AFR_AF=0.21;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6348;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113671410 rs3811047 A G 100 PASS AA=a;AC=2;AF=0.65;AFR_AF=0.26;AMR_AF=0.79;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0016;EUR_AF=0.70;LDAF=0.6471;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113676314 rs184728003 C T 100 PASS AA=c;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113763463 rs2305152 A C 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.03;AMR_AF=0.45;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2921;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113763575 rs895497 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.78;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8208;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113785727 rs1562304 A G 100 PASS AA=g;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9790;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113789316 rs2305150 C T 100 PASS AA=c;AC=2;AF=0.63;AFR_AF=0.61;AMR_AF=0.60;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6285;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113832312 rs6761276 T C 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.59;AMR_AF=0.57;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4789;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113832333 rs6743376 C A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.74;AMR_AF=0.69;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7019;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113832981 rs13005572 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1763;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113875565 rs2234678 A G 100 PASS AA=a;AC=2;AF=0.18;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1810;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113875584 rs2234679 G C 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1810;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113875631 rs16065 T C 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1810;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113877713 rs878972 A C 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1851;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113887207 rs419598 T C 100 PASS AA=T;AC=2;AF=0.18;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1851;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113887262 rs423904 C T 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1851;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113887273 rs446433 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1851;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113888579 rs432014 T C 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.15;AMR_AF=0.35;AN=2;ASN_AF=0.08;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2133;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 113940681 rs3748914 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.75;AMR_AF=0.53;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0012;EUR_AF=0.46;LDAF=0.5801;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113940839 rs4849167 G C 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.58;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5362;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113942903 rs1975535 A C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.75;AMR_AF=0.53;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5781;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113943470 rs2241976 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.75;AMR_AF=0.53;AN=2;ASN_AF=0.62;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5830;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 113956371 rs2276561 G C 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.20;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4565;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 113956821 rs2305133 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.20;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9964;ERATE=0.0006;EUR_AF=0.47;LDAF=0.4574;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.100:-3.80,-0.31,-0.29 +2 114492135 rs2305254 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.48;AMR_AF=0.37;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3958;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 114501242 rs3748907 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.20;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1714;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 114513901 rs4321376 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.24;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2147;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.10 +2 116497479 rs1550854 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9621;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 116510817 rs2053724 G C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.19;AMR_AF=0.70;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5722;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 116525960 rs1446495 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 116539979 rs141057562 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0053;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 116548820 rs3738879 C T 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8481;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 116594221 rs736335 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.0041;AMR_AF=0.22;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2784;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 116599927 rs272009 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9849;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 118575215 rs1052637 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.61;AMR_AF=0.35;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3793;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 118677916 rs35891278 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0553;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 118688754 rs971754 T C 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9690;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 118704478 rs7580124 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 118704503 rs2303329 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.33;AMR_AF=0.67;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6156;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 118706879 rs1035598 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9694;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 118731573 rs748767 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.40;LDAF=0.4521;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +2 118743630 rs33975708 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.08;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0553;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 118771566 rs11545372 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.46;AMR_AF=0.28;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2996;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-0.63,-0.11,-5.00 +2 118865814 rs13003121 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.10;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0375;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 119748143 . C G 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9989;ERATE=0.0017;EUR_AF=0.15;LDAF=0.1294;RSQ=0.9962;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 119749477 rs2304708 T G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.75;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8659;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +2 119915249 rs7556873 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.59;AMR_AF=0.76;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5973;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 119915509 rs1317848 G T 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.11;AMR_AF=0.21;AN=2;ASN_AF=0.60;AVGPOST=0.9545;ERATE=0.0042;EUR_AF=0.27;LDAF=0.3167;RSQ=0.9238;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.950:-1.60,-0.01,-5.00 +2 119988565 rs838100 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.30;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3207;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 120129886 rs8192507 G A 100 PASS AA=G;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0005;LDAF=0.0046;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 120197670 rs1042656 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.39;AMR_AF=0.73;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6133;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 120199140 rs1530100 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.85;AMR_AF=0.85;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8761;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 120209689 rs2587692 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9068;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +2 120230998 rs2579641 G A 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.63;AMR_AF=0.82;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8099;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.78,-0.00 +2 120231165 rs2587701 T C 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.30;AMR_AF=0.79;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.84;LDAF=0.7233;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 120362407 rs1568540 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.72;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8926;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 120362897 rs1521914 T A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 120369300 rs10864986 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 120388412 rs2272058 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 120414083 rs6761357 C T 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.49;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9926;ERATE=0.0732;EUR_AF=0.66;LDAF=0.5837;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 120438523 rs13011768 A G 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.61;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7765;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 120438696 rs939777 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9854;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 120439230 rs1983406 C G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.61;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7765;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 120704166 rs2289580 G T 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6631;RSQ=0.9997;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 120799566 rs41279782 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0083;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 120830815 rs3738970 A G 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.41;AMR_AF=0.74;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6640;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 120885310 rs1034489 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6348;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 120889173 rs3738968 G C 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6348;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 120900736 rs75582263 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.36;AMR_AF=0.25;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2820;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 120918585 rs12617570 A C 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.41;AMR_AF=0.70;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6362;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 121713022 rs6718382 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9899;ERATE=0.0012;EUR_AF=1.00;LDAF=0.9938;RSQ=0.3718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +2 121713030 rs12614482 G A 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.34;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.95;LDAF=0.8201;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +2 121713041 rs12617878 T C 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.34;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9958;ERATE=0.0004;EUR_AF=0.95;LDAF=0.8176;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +2 121726447 rs2592595 G A 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.42;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8529;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 121729490 rs2592591 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.62;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8981;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 121729686 rs2592590 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.62;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8980;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 121740505 rs280196 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.34;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9947;ERATE=0.0030;EUR_AF=0.96;LDAF=0.8178;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 121744225 rs2276553 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.38;AMR_AF=0.60;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5720;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 121746956 rs3738880 G T 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.37;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5607;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 121747406 rs12711538 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.52;AMR_AF=0.60;AN=2;ASN_AF=0.49;AVGPOST=0.9931;ERATE=0.0040;EUR_AF=0.71;LDAF=0.5932;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 121747429 rs10167980 A G 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.37;AMR_AF=0.60;AN=2;ASN_AF=0.50;AVGPOST=0.9972;ERATE=0.0009;EUR_AF=0.72;LDAF=0.5638;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 121981950 rs11890430 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.42;AMR_AF=0.29;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3172;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 121982011 rs4384798 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.11;AMR_AF=0.43;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3610;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 121989489 rs2304667 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0022;EUR_AF=0.50;LDAF=0.3511;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 121995151 rs2260394 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.43;AMR_AF=0.21;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.09;LDAF=0.2855;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 121997120 rs41278936 G A 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.22;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0741;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 122004596 rs2252862 C G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.88;AMR_AF=0.43;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5877;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.60,-0.01 +2 125192068 rs1425745 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.71;AMR_AF=0.83;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8532;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 125204285 rs11689115 G T 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0892;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 125320888 rs199662771 A C 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9249;ERATE=0.1372;EUR_AF=0.22;LDAF=0.2551;RSQ=0.7970;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 125405302 rs924802 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.25;AVGPOST=0.9987;ERATE=0.0007;EUR_AF=0.60;LDAF=0.4357;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 127950904 rs885276 A T 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.41;AMR_AF=0.56;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4768;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 127951458 rs2089109 G A 100 PASS AA=G;AC=2;AF=0.41;AFR_AF=0.40;AMR_AF=0.49;AN=2;ASN_AF=0.46;AVGPOST=0.9888;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4150;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 127951459 rs12476709 C T 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.18;AMR_AF=0.47;AN=2;ASN_AF=0.46;AVGPOST=0.9893;ERATE=0.0039;EUR_AF=0.34;LDAF=0.3586;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 128180872 rs5936 G T 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.66;AMR_AF=0.75;AN=2;ASN_AF=0.58;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6585;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +2 128181028 rs1878844 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9957;RSQ=0.9442;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.70,-0.10 +2 128321770 rs2404991 G A 100 PASS AA=G;AC=2;AF=0.45;AFR_AF=0.17;AMR_AF=0.57;AN=2;ASN_AF=0.55;AVGPOST=0.9903;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4513;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0126;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.48,-0.00 +2 128339456 rs4662740 G T 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.07;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4308;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 128345960 rs10928773 T C 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.27;AMR_AF=0.53;AN=2;ASN_AF=0.68;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4818;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 128400608 rs4662751 C T 100 PASS AA=c;AC=2;AF=0.60;AFR_AF=0.50;AMR_AF=0.63;AN=2;ASN_AF=0.73;AVGPOST=0.9936;ERATE=0.0028;EUR_AF=0.54;LDAF=0.5949;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +2 128411950 rs6707282 A G 100 PASS AA=.;AC=2;AF=0.88;AFR_AF=0.80;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=0.9919;ERATE=0.0005;EUR_AF=0.86;LDAF=0.8813;RSQ=0.9705;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 128699776 rs2304520 T G 100 PASS AA=.;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0526;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 128744457 rs3732196 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0526;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 128744580 rs2948068 A G 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.49;AMR_AF=0.81;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7470;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 128870808 rs4662775 T C 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.67;AMR_AF=0.92;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8583;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 128878014 rs4662594 G A 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.73;AMR_AF=0.93;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8725;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 130738220 rs201440216 G C 100 PASS AA=.;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9894;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0127;RSQ=0.6748;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.900:-2.38,-0.42,-0.21 +2 130832444 rs2599794 C A 100 PASS AA=.;AC=2;AF=0.47;AFR_AF=0.29;AMR_AF=0.59;AN=2;ASN_AF=0.52;AVGPOST=0.8257;ERATE=0.0134;EUR_AF=0.49;LDAF=0.4509;RSQ=0.7510;SNPSOURCE=EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:1.950:-0.48,-0.48,-0.48 +2 130897234 rs3177472 C T 100 PASS AA=.;AC=2;AF=0.38;AFR_AF=0.30;AMR_AF=0.40;AN=2;ASN_AF=0.47;AVGPOST=0.9941;ERATE=0.0005;EUR_AF=0.35;LDAF=0.3798;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0095;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.91,-0.06 +2 130897559 rs2258632 C A 100 PASS AA=.;AC=2;AF=0.25;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=0.9093;ERATE=0.0104;EUR_AF=0.23;LDAF=0.2535;RSQ=0.8489;SNPSOURCE=LOWCOV,EXOME;THETA=0.0082;VT=SNP GT:DS:GL 1|1:1.500:-0.67,-0.29,-0.57 +2 130897620 rs76485676 A G 100 PASS AA=.;AC=2;AF=0.29;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.8661;ERATE=0.0154;EUR_AF=0.25;LDAF=0.2885;RSQ=0.7877;SNPSOURCE=EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:1.850:-0.48,-0.48,-0.48 +2 130899804 rs138331089 T C 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.94;AMR_AF=0.76;AN=2;ASN_AF=0.73;AVGPOST=0.8119;ERATE=0.0207;EUR_AF=0.65;LDAF=0.7120;RSQ=0.6845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:1.950:-3.03,-0.47,-0.18 +2 130910847 rs4511676 G A 100 PASS AA=.;AC=2;AF=0.39;AFR_AF=0.34;AMR_AF=0.42;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3895;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 130925088 rs10909567 C T 100 PASS AA=.;AC=2;AF=0.37;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.47;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3649;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.87,-0.00 +2 130930819 rs60309319 C T 100 PASS AA=c;AC=2;AF=0.36;AFR_AF=0.24;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9931;ERATE=0.0005;EUR_AF=0.34;LDAF=0.3604;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +2 130949411 rs10208844 G T 100 PASS AA=N;AC=2;AF=0.90;AFR_AF=0.91;AMR_AF=0.90;AN=2;ASN_AF=0.94;AVGPOST=0.9527;ERATE=0.0067;EUR_AF=0.86;LDAF=0.8910;RSQ=0.8118;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.71,-0.01 +2 130949491 rs60154251 G A 100 PASS AA=g;AC=2;AF=0.40;AFR_AF=0.34;AMR_AF=0.46;AN=2;ASN_AF=0.47;AVGPOST=0.9972;ERATE=0.0006;EUR_AF=0.37;LDAF=0.4024;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.00,-0.00 +2 130949553 rs1052422 A G 100 PASS AA=N;AC=2;AF=0.34;AFR_AF=0.29;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9642;ERATE=0.0110;EUR_AF=0.29;LDAF=0.3349;RSQ=0.9456;SNPSOURCE=EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.90,-0.06 +2 130951566 rs7340193 G A 100 PASS AA=g;AC=2;AF=0.78;AFR_AF=0.61;AMR_AF=0.79;AN=2;ASN_AF=0.90;AVGPOST=0.9466;ERATE=0.0121;EUR_AF=0.78;LDAF=0.7691;RSQ=0.8642;SNPSOURCE=LOWCOV,EXOME;THETA=0.0093;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.13,-0.03 +2 130951581 rs1052312 A G 100 PASS AA=a;AC=2;AF=0.42;AFR_AF=0.56;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9761;ERATE=0.0005;EUR_AF=0.32;LDAF=0.4238;RSQ=0.9607;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +2 130951754 rs13000249 G T 100 PASS AA=g;AC=2;AF=0.34;AFR_AF=0.21;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9773;ERATE=0.0051;EUR_AF=0.34;LDAF=0.3413;RSQ=0.9562;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.86,-0.06 +2 130951848 rs2259488 T C 100 PASS AA=N;AC=2;AF=0.32;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=0.9309;ERATE=0.0300;EUR_AF=0.28;LDAF=0.3245;RSQ=0.8949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|1:1.950:-3.42,-0.50,-0.17 +2 130951949 rs62165074 G A 100 PASS AA=g;AC=2;AF=0.40;AFR_AF=0.34;AMR_AF=0.45;AN=2;ASN_AF=0.47;AVGPOST=0.9935;ERATE=0.0014;EUR_AF=0.36;LDAF=0.3989;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +2 130952038 rs13000721 G A 100 PASS AA=g;AC=2;AF=0.33;AFR_AF=0.20;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=0.9644;ERATE=0.0038;EUR_AF=0.31;LDAF=0.3277;RSQ=0.9413;SNPSOURCE=EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|1:1.900:-4.70,-0.61,-0.12 +2 130952718 rs3853852 G A 100 PASS AA=g;AC=2;AF=0.37;AFR_AF=0.37;AMR_AF=0.43;AN=2;ASN_AF=0.43;AVGPOST=0.9846;ERATE=0.0011;EUR_AF=0.29;LDAF=0.3633;RSQ=0.9774;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.65,-0.11 +2 130952725 rs3863907 C T 100 PASS AA=N;AC=2;AF=0.46;AFR_AF=0.74;AMR_AF=0.48;AN=2;ASN_AF=0.42;AVGPOST=0.9737;ERATE=0.0070;EUR_AF=0.30;LDAF=0.4593;RSQ=0.9663;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +2 131116404 rs7568956 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.60;AMR_AF=0.25;AN=2;ASN_AF=0.31;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.20;LDAF=0.3288;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 131487673 rs272128 A C 100 PASS AA=.;AC=2;AF=0.95;AFR_AF=0.96;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.92;LDAF=0.9540;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 131520178 rs77687733 C G 100 PASS AA=C;AC=2;AF=0.15;AFR_AF=0.01;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9947;ERATE=0.0009;EUR_AF=0.19;LDAF=0.1549;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 131520663 rs1905235 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9900;RSQ=0.9176;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 132236963 rs72992284 C T 100 PASS AA=c;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.23;AN=2;ASN_AF=0.25;AVGPOST=0.9670;ERATE=0.0728;EUR_AF=0.22;LDAF=0.2420;RSQ=0.9061;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 132237732 rs145612794 C T 100 PASS AA=c;AC=1;AF=0.11;AFR_AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.12;AVGPOST=0.9459;ERATE=0.0293;EUR_AF=0.11;LDAF=0.1200;RSQ=0.7747;SNPSOURCE=EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.80 +2 132237983 rs71347110 A G 100 PASS AA=g;AC=2;AF=0.44;AFR_AF=0.45;AMR_AF=0.47;AN=2;ASN_AF=0.68;AVGPOST=0.9300;ERATE=0.0144;EUR_AF=0.22;LDAF=0.4306;RSQ=0.9155;SNPSOURCE=EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-2.45,-0.43,-0.21 +2 132524797 rs202059810 C T 100 PASS AA=.;AC=2;AF=0.21;AFR_AF=0.22;AMR_AF=0.22;AN=2;ASN_AF=0.11;AVGPOST=0.6952;ERATE=0.0226;EUR_AF=0.27;LDAF=0.3015;RSQ=0.3698;SNPSOURCE=EXOME;THETA=0.0093;VT=SNP GT:DS:GL 1|1:1.100:-0.48,-0.48,-0.48 +2 133489401 rs17397142 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1295;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133539566 rs6730282 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.49;AMR_AF=0.48;AN=2;ASN_AF=0.78;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5591;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133540605 rs13016342 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.16;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1215;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133541444 rs12691829 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.85;AMR_AF=0.64;AN=2;ASN_AF=0.89;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.52;LDAF=0.7109;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133541454 rs12691830 A G 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.83;AMR_AF=0.63;AN=2;ASN_AF=0.89;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6961;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133541575 rs12611515 C T 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.44;AMR_AF=0.33;AN=2;ASN_AF=0.52;AVGPOST=0.9969;ERATE=0.0007;EUR_AF=0.28;LDAF=0.3870;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133542014 rs12616282 T C 100 PASS AA=c;AC=1;AF=0.70;AFR_AF=0.83;AMR_AF=0.64;AN=2;ASN_AF=0.89;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6988;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133542545 rs10191147 G A 100 PASS AA=g;AC=1;AF=0.36;AFR_AF=0.42;AMR_AF=0.31;AN=2;ASN_AF=0.51;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3648;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133542585 rs17325719 C G 100 PASS AA=c;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0901;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133554288 rs1868076 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.73;AMR_AF=0.64;AN=2;ASN_AF=0.91;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.53;LDAF=0.6928;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 133971322 rs181912343 C T 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0041;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 134060719 rs7604084 T C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.28;AMR_AF=0.11;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1536;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 135099144 rs2290047 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0992;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 135180526 rs2289466 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.08;AMR_AF=0.05;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 135470735 rs2276161 A T 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2363;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 135694379 rs1374289 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.83;AMR_AF=0.66;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.7157;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 135700151 rs3816339 A T 100 PASS AA=T;AC=2;AF=0.43;AFR_AF=0.56;AMR_AF=0.39;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4333;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +2 135710322 rs10166142 A G 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.64;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6879;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 135711516 rs3814355 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.83;AMR_AF=0.66;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.7144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 135711657 rs3814354 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.72;AMR_AF=0.64;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 135745392 rs11888766 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.22;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2102;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 135745545 rs11899779 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.35;AMR_AF=0.22;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3464;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 135745722 rs10928526 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.35;AMR_AF=0.22;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3465;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 135756265 rs58663889 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.11;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0092;EUR_AF=0.09;LDAF=0.1212;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0110;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 135911422 rs17261772 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.96;AMR_AF=0.65;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.41;LDAF=0.7249;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 136545844 rs1042712 C G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7518;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136546110 rs2278544 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4926;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136548192 rs1808756 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9657;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136555659 rs2322659 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.27;AMR_AF=0.50;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0074;EUR_AF=0.65;LDAF=0.4891;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136558157 rs748841 C T 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.17;AMR_AF=0.46;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4328;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136561557 rs2304371 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.42;AMR_AF=0.72;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6846;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136569848 rs12988076 C A 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.11;AMR_AF=0.46;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4178;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136575199 rs6719488 G T 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.11;AMR_AF=0.46;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4184;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136575534 rs4954449 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9803;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 136594158 rs2236783 G A 100 PASS AA=g;AC=1;AF=0.41;AFR_AF=0.12;AMR_AF=0.43;AN=2;ASN_AF=0.38;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4078;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 136614255 rs309180 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.12;AMR_AF=0.42;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4036;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 139429068 rs10803570 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.86;AMR_AF=0.72;AN=2;ASN_AF=0.47;AVGPOST=0.9988;ERATE=0.0011;EUR_AF=0.72;LDAF=0.6846;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 140992337 rs13387241 C A 100 PASS AA=c;AC=2;AF=0.47;AFR_AF=0.29;AMR_AF=0.50;AN=2;ASN_AF=0.51;AVGPOST=0.9899;ERATE=0.0218;EUR_AF=0.55;LDAF=0.4733;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 141027926 rs3748865 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1879;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141032088 rs1386356 C T 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.19;AMR_AF=0.57;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5443;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 141260668 rs4444457 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.47;AMR_AF=0.47;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5589;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 141274576 rs4954672 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.67;AMR_AF=0.74;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6394;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141283603 rs1352047 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9863;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 141298674 rs13013854 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.13;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3402;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 141298682 rs11694934 G C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.45;AMR_AF=0.48;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5140;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 141299317 rs9287535 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.47;AMR_AF=0.49;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5315;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 141473505 rs4954852 A T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4511;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 141528592 rs7599219 T C 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.80;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8912;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 141533662 rs996361 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.80;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8908;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 141571329 rs3749010 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.74;AMR_AF=0.80;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8601;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 141625410 rs12987572 A C 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.15;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141707868 rs6748626 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.48;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2646;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141708021 rs6706503 T A 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.48;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2641;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141709406 rs1991540 T G 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1485;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141709419 rs1429348 T G 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.26;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.65;LDAF=0.5543;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 141747249 rs1429365 A T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.57;AMR_AF=0.41;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5046;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141751592 rs13007735 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.56;AMR_AF=0.40;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4858;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141773306 rs143197572 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 141816621 rs1525579 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9534;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 141945949 rs1249434 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 142567910 rs12990449 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.16;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2162;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 143787274 rs6430000 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 144193293 rs12621011 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1128;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 144194447 rs6755050 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.17;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0850;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 144899559 rs3731958 C A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.74;AMR_AF=0.65;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.55;LDAF=0.6807;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 148657117 rs1128919 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3870;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 148716428 rs2307394 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.44;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3889;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 149520214 rs10193313 C A 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.41;AMR_AF=0.59;AN=2;ASN_AF=0.41;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.81;LDAF=0.5775;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 150305703 rs11681264 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.24;AMR_AF=0.18;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1942;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +2 150432377 rs12232959 C G 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.19;AMR_AF=0.69;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6485;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +2 150432976 rs11545261 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.44;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7774;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152226570 rs1046668 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.29;AMR_AF=0.11;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1778;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152311570 rs2444263 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.63;AMR_AF=0.71;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6965;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152314385 rs16830047 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.10;AMR_AF=0.39;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2861;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152320118 rs2123465 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.63;AMR_AF=0.71;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6970;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152322095 rs2444257 A T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7234;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152331418 rs1065177 C G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0007;EUR_AF=0.71;LDAF=0.7208;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152342481 rs16830090 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.10;AMR_AF=0.39;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2856;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152349026 rs2288195 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.63;AMR_AF=0.71;AN=2;ASN_AF=0.79;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6970;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152352843 rs7575451 C G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.63;AMR_AF=0.69;AN=2;ASN_AF=0.78;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.64;LDAF=0.6836;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +2 152374800 rs16830136 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.55;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6065;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152382454 rs6721666 C G 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.55;AMR_AF=0.68;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6075;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152387553 rs4664475 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.37;AMR_AF=0.66;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.61;LDAF=0.5636;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152394534 rs3732310 T G 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.40;AMR_AF=0.67;AN=2;ASN_AF=0.61;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5703;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152404294 rs2288201 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.66;AMR_AF=0.67;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6754;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152417064 rs2288206 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.31;AMR_AF=0.40;AN=2;ASN_AF=0.35;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3166;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152417628 rs145127681 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0115;RSQ=0.9707;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152422076 rs2288210 C G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.66;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.67;LDAF=0.7028;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152422087 rs2288211 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.04;AMR_AF=0.39;AN=2;ASN_AF=0.34;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2664;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152432886 rs61254943 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.23;AMR_AF=0.38;AN=2;ASN_AF=0.34;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2933;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152467001 rs11902616 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.04;AN=2;ASN_AF=0.16;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.02;LDAF=0.1640;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152474001 rs4303716 A G 100 PASS AA=a;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.31;AVGPOST=0.9495;ERATE=0.0300;EUR_AF=0.30;LDAF=0.2724;RSQ=0.8957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.67 +2 152476130 rs6717213 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.28;AMR_AF=0.04;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1215;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152496526 rs6713162 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.72;AMR_AF=0.19;AN=2;ASN_AF=0.62;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.17;LDAF=0.4149;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152511778 rs10930723 A C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.68;AMR_AF=0.19;AN=2;ASN_AF=0.62;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.17;LDAF=0.4031;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152520027 rs12620077 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.64;AMR_AF=0.18;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.17;LDAF=0.3917;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152521096 rs10170273 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.70;AMR_AF=0.18;AN=2;ASN_AF=0.61;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.17;LDAF=0.4068;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152522556 rs4664496 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.41;AMR_AF=0.12;AN=2;ASN_AF=0.50;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.12;LDAF=0.2829;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152527572 rs7426114 C T 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.21;AMR_AF=0.80;AN=2;ASN_AF=0.39;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.83;LDAF=0.5701;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152527608 rs34577613 C T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.49;AMR_AF=0.13;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3205;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152531077 rs6711382 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.59;AMR_AF=0.90;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7404;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 152531781 rs12618063 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.40;AMR_AF=0.10;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2747;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 152536498 rs6735208 T A 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.33;AMR_AF=0.83;AN=2;ASN_AF=0.47;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6192;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152552062 rs6433569 A C 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.10;AMR_AF=0.78;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.81;LDAF=0.5350;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 152573981 rs4611637 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.30;AMR_AF=0.81;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.82;LDAF=0.6078;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 153000337 rs12617139 T A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.87;AMR_AF=0.57;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.50;LDAF=0.6942;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 153378459 rs4664114 T C 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.68;AMR_AF=0.72;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6992;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 153378574 rs4664592 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.40;AMR_AF=0.51;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5425;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 153405594 rs1155779 G A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.52;AMR_AF=0.62;AN=2;ASN_AF=0.80;AVGPOST=0.9938;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6339;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 153415235 rs10195938 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.12;AN=2;ASN_AF=0.23;AVGPOST=0.9619;ERATE=0.0556;EUR_AF=0.18;LDAF=0.1649;RSQ=0.8788;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 153415376 rs6434098 T G 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.86;AMR_AF=0.67;AN=2;ASN_AF=0.81;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7802;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 153481943 rs2346532 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9986;RSQ=0.7744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 153483257 rs7604573 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.56;AMR_AF=0.41;AN=2;ASN_AF=0.84;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.50;LDAF=0.5849;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 153483281 rs9989874 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.25;AN=2;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1567;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 153486283 rs142842065 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0024;RSQ=0.9565;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 153492910 rs1561267 G T 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.69;AMR_AF=0.88;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.90;LDAF=0.8368;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 153514583 rs6713779 G C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.80;AMR_AF=0.85;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7870;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.02,-0.00 +2 153519524 rs1036526 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.70;AMR_AF=0.84;AN=2;ASN_AF=0.71;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7634;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 153520782 rs3762507 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.70;AMR_AF=0.84;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7637;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 153535670 rs10166987 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9985;RSQ=0.9405;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 153577013 rs9646744 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.80;AMR_AF=0.86;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7920;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 155306885 rs697648 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9849;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 155711357 rs17642086 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2107;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 157406249 rs2116665 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.46;AMR_AF=0.67;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6554;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 157406296 rs2116664 A C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.71;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7249;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 157427837 rs1469651 C A 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6928;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 157427850 rs1469650 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.59;AMR_AF=0.68;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6928;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 158115129 rs61748237 A T 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.10;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 158157361 rs3214040 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.59;AMR_AF=0.80;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8035;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 158291188 rs11904180 A C 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.61;AMR_AF=0.84;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8171;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.74,-0.01 +2 158395079 rs77015367 C G 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0023;EUR_AF=0.89;LDAF=0.8779;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 158400908 rs6728987 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.64;AMR_AF=0.80;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8025;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 158401137 rs10432556 T C 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.47;AMR_AF=0.77;AN=2;ASN_AF=0.92;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7607;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 158443889 rs4556933 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.67;AMR_AF=0.44;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.39;LDAF=0.4360;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 158626980 rs1146031 C T 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.73;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9209;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 158636910 rs2227861 G A 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.21;AMR_AF=0.76;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.77;LDAF=0.6764;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 158978178 rs10804389 C G 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.51;AMR_AF=0.55;AN=2;ASN_AF=0.06;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.53;LDAF=0.4071;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 159028800 rs2222390 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 159166069 rs7559772 T C 100 PASS AA=t;AC=2;AF=0.95;AFR_AF=0.93;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9533;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 159195225 rs11686762 T G 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1513;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 159522879 rs2248854 C G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.76;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6615;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 159660870 rs17810398 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0768;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 159663599 rs9869 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.56;AMR_AF=0.55;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0039;EUR_AF=0.43;LDAF=0.5831;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 159992699 rs2288105 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.18;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2272;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160019863 rs12466551 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 160027069 rs148444366 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0010;RSQ=0.9157;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160035195 rs12988603 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2080;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160035207 rs6748288 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 160042273 rs78921157 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.15;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0463;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.81 +2 160084473 rs2288110 A C 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.38;AMR_AF=0.54;AN=2;ASN_AF=0.62;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4661;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160086653 rs4664276 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.48;AN=2;ASN_AF=0.54;AVGPOST=0.9715;ERATE=0.0178;EUR_AF=0.30;LDAF=0.3957;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160086654 rs55738533 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=0.9703;ERATE=0.0188;EUR_AF=0.29;LDAF=0.4104;RSQ=0.9599;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160086692 rs3821296 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.54;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.37;LDAF=0.4648;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160087535 rs3821301 T G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.64;AMR_AF=0.87;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7709;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 160112881 rs7591849 G T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.73;AMR_AF=0.42;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160114437 rs3213715 G A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.53;AMR_AF=0.37;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160116281 rs4665052 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.04;AMR_AF=0.32;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.2478;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160136337 rs174264 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 160176943 rs174229 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9565;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 160304741 rs12470533 A T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.34;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3838;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160599796 rs80210415 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160604514 rs76774368 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0279;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160604812 rs1427329 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.38;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3382;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160605268 rs1365803 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.8930;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 160639970 rs2114626 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.38;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3368;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160663678 rs7566887 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.61;AMR_AF=0.75;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.78;LDAF=0.6421;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160667004 rs35590513 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0668;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160676427 rs12692566 C A 100 PASS AA=A;AC=1;AF=0.86;AFR_AF=0.92;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.8574;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160692082 rs12468507 G A 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0110;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160697305 rs34702313 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0110;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160697447 rs36090480 C T 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0110;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160710922 rs2729705 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.75;AMR_AF=0.45;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5617;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160711045 rs3951216 G C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.39;AMR_AF=0.56;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5197;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160714906 rs116003141 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160721357 rs78088512 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0133;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160729134 rs1397705 A C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.60;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.8848;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 160737560 rs2729711 G T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.47;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.8556;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 160743040 rs2271381 T A 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.26;LDAF=0.1963;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160833188 rs2715918 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.91;AMR_AF=0.87;AN=2;ASN_AF=0.87;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.82;LDAF=0.8604;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160873270 rs2667040 A G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.63;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7468;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160889673 rs2203053 G A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.34;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5092;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160901353 rs12327936 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0210;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 160901517 rs4665143 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.15;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.63;LDAF=0.5064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 160983060 rs2305819 G C 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.32;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1668;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 161025685 rs7608557 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.31;AMR_AF=0.06;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.05;LDAF=0.2181;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +2 161029218 rs2305818 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.04;AMR_AF=0.29;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.2898;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 161051853 rs2124971 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.34;AMR_AF=0.07;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.2262;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 161223688 rs12692594 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.35;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1417;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 162059969 rs11884495 A T 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.30;AMR_AF=0.53;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4387;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 162091836 rs3754970 T C 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.30;AMR_AF=0.53;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4402;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 162175290 rs1116165 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +2 162280748 rs890076 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.57;AMR_AF=0.81;AN=2;ASN_AF=0.84;AVGPOST=0.9845;ERATE=0.0015;EUR_AF=0.81;LDAF=0.7605;RSQ=0.9653;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.07,-0.83 +2 162696252 rs72879270 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0061;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 162821515 rs4233647 G A 100 PASS AA=g;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.01;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2317;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 162890175 rs1558957 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.98;AMR_AF=0.62;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.8002;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 162891848 rs6432708 C T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.98;AMR_AF=0.62;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.8004;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 162904013 rs116302758 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0192;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 163124051 rs1990760 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.11;AMR_AF=0.45;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.61;LDAF=0.3680;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 163128824 rs3747517 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.60;AMR_AF=0.76;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.74;LDAF=0.6091;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 164468360 rs2231899 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.52;AMR_AF=0.34;AN=2;ASN_AF=0.39;AVGPOST=0.9875;ERATE=0.0029;EUR_AF=0.19;LDAF=0.3433;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 165353712 rs8192673 C T 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.68;AMR_AF=0.75;AN=2;ASN_AF=0.38;AVGPOST=0.9986;ERATE=0.0097;EUR_AF=0.73;LDAF=0.6302;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0243;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 165476253 rs61748245 A T 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.22;AMR_AF=0.70;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.4962;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 165551201 rs7607980 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.21;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1138;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 166152389 rs17183814 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0726;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 166153499 rs7593568 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.74;AMR_AF=0.82;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7718;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +2 166170127 rs2121371 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.74;AMR_AF=0.81;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7719;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 166172317 rs1838846 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.75;AMR_AF=0.81;AN=2;ASN_AF=0.71;AVGPOST=0.9957;ERATE=0.0013;EUR_AF=0.82;LDAF=0.7755;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 166179650 rs1867864 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.58;AMR_AF=0.49;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.55;LDAF=0.4917;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 166234076 rs1864885 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.28;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2199;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166535754 rs183252532 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166535918 rs777346 C T 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.36;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4133;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166621354 rs2113840 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 166770120 rs10176588 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2866;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166771663 rs7590559 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.42;AMR_AF=0.42;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3702;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166773971 rs6750044 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.30;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2975;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166788336 rs7592429 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9506;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 166797646 rs1432273 C T 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.59;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.63;LDAF=0.6732;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 166799893 rs10930190 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 166850811 rs200263247 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166892788 rs2298771 C T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7856;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166893081 rs7601520 G A 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7856;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166896143 rs2126152 T G 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166897864 rs6432860 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.69;LDAF=0.7854;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166900606 rs6753355 A C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.84;AMR_AF=0.75;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7857;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.72 +2 166903445 rs7580482 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.55;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7166;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 166905480 rs994399 G A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.55;AMR_AF=0.72;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7166;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 167055393 rs3750904 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0690;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 167060449 rs10180721 A T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.94;AMR_AF=0.89;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9037;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 167129256 rs4369876 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0370;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 167133540 rs12478318 T G 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0370;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 167137119 rs6432893 G A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.81;AMR_AF=0.57;AN=2;ASN_AF=0.32;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5267;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.34,-0.00 +2 167140955 rs7608201 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1198;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 167144974 rs6747673 A T 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.81;AMR_AF=0.57;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5282;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 167144995 rs13402180 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.34;AMR_AF=0.36;AN=2;ASN_AF=0.24;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3408;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 167145142 rs13414203 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.34;AMR_AF=0.36;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3405;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 167149693 rs7588632 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.92;AMR_AF=0.67;AN=2;ASN_AF=0.69;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7141;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +2 167160735 rs74449889 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.0041;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0571;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0112;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 167266360 rs141677829 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0006;RSQ=0.7805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 167759948 rs7599152 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.80;AMR_AF=0.60;AN=2;ASN_AF=0.74;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.43;LDAF=0.6202;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 168099316 rs143400009 T C 100 PASS AA=T;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.0024;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168099738 rs10497323 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.59;AMR_AF=0.24;AN=2;ASN_AF=0.36;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3277;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168099775 rs16853305 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.40;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2139;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168099796 rs16853306 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.41;AMR_AF=0.15;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2238;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168103304 rs16853309 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.35;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1765;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168103863 rs7581012 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.35;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1774;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168104627 rs61750760 G A 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.35;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1773;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168105695 rs16853326 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0156;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168106246 rs16853330 G A 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.39;AMR_AF=0.14;AN=2;ASN_AF=0.24;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2204;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168107155 rs16853331 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.35;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1773;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168107491 rs3749004 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.35;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1774;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168108032 rs16853333 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0119;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168108357 rs1842233 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.55;AMR_AF=0.24;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3195;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168110534 rs114227676 A G 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.06;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0192;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 168931610 rs3739115 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.23;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1001;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 168986154 rs925846 A G 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.83;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8145;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 169690729 rs522893 T C 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.59;AMR_AF=0.54;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5844;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 169707552 rs488621 A G 100 PASS AA=a;AC=1;AF=0.46;AFR_AF=0.25;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4556;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 169721377 rs479661 G A 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8880;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 169721381 rs3931 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2354;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 169763148 rs560887 T C 100 PASS AA=C;AC=1;AF=0.85;AFR_AF=0.99;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8483;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 169764176 rs492594 G C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.34;AMR_AF=0.56;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.45;LDAF=0.4392;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 169780366 rs579275 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.22;AMR_AF=0.50;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4776;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 169789016 rs497692 T C 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.22;AMR_AF=0.51;AN=2;ASN_AF=0.62;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4783;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 169801488 rs853789 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.94;AMR_AF=0.76;AN=2;ASN_AF=0.99;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.64;LDAF=0.8175;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.22,-0.00 +2 169814655 rs853772 G T 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.22;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.50;LDAF=0.4759;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 169828325 rs2241340 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.54;AMR_AF=0.50;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5977;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 169830328 rs2287622 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.54;AMR_AF=0.50;AN=2;ASN_AF=0.70;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.59;LDAF=0.5935;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 169842809 rs2287618 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.85;AMR_AF=0.57;AN=2;ASN_AF=0.80;AVGPOST=0.9987;ERATE=0.0008;EUR_AF=0.72;LDAF=0.7432;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 169997051 rs990626 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.25;AMR_AF=0.68;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.73;LDAF=0.5388;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170003432 rs4667591 T G 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.14;AMR_AF=0.72;AN=2;ASN_AF=0.45;AVGPOST=0.9992;ERATE=0.0049;EUR_AF=0.79;LDAF=0.5417;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170010985 rs2075252 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.93;AMR_AF=0.80;AN=2;ASN_AF=0.50;AVGPOST=0.9944;ERATE=0.0145;EUR_AF=0.78;LDAF=0.7435;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170032989 rs2229265 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.31;AMR_AF=0.62;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3734;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170092395 rs2229267 A G 100 PASS AA=A;AC=2;AF=0.41;AFR_AF=0.67;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=0.25;LDAF=0.4136;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170096018 rs830973 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.34;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.32;LDAF=0.3839;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170099446 rs831041 T G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.63;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170099473 rs831042 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.57;AMR_AF=0.61;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5083;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170099895 rs2075255 A C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.75;AMR_AF=0.64;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.47;LDAF=0.5587;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170099899 rs2075254 G A 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.63;AN=2;ASN_AF=0.46;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5383;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170103336 rs831043 T C 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.62;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5370;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170103351 rs2075249 G T 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.21;AMR_AF=0.54;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4185;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170115588 rs2241190 T C 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.69;AMR_AF=0.62;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.47;LDAF=0.5416;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170129528 rs830994 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.49;AMR_AF=0.55;AN=2;ASN_AF=0.87;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.66;LDAF=0.6607;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170139346 rs831010 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.86;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8624;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170150671 rs2229266 G A 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.36;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=0.9968;ERATE=0.0294;EUR_AF=0.23;LDAF=0.3417;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0204;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170218816 rs1559013 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9824;ERATE=0.0010;EUR_AF=0.99;LDAF=0.9737;RSQ=0.7459;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +2 170218847 rs1559014 C G 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9979;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9832;RSQ=0.9445;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-0.88,-0.39,-0.34 +2 170336024 rs1879466 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9286;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.84,-0.00 +2 170386294 rs7349274 G A 100 PASS AA=g;AC=2;AF=0.10;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1024;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 170402752 rs2290010 T C 100 PASS AA=T;AC=2;AF=0.10;AFR_AF=0.02;AMR_AF=0.11;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1033;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170492567 rs2290007 A G 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.71;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5452;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170492584 rs2290008 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.79;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6389;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170493103 rs1050354 T A 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.71;AMR_AF=0.51;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5452;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170605981 rs4667607 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 170662153 rs202137537 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 170665108 rs2556352 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.46;AMR_AF=0.71;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5909;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 171055772 rs35745676 A G 100 PASS AA=G;AC=2;AF=0.15;AFR_AF=0.14;AMR_AF=0.15;AN=2;ASN_AF=0.32;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1453;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171070850 rs13423313 G T 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.37;AMR_AF=0.38;AN=2;ASN_AF=0.45;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3965;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171070912 rs13385825 T C 100 PASS AA=t;AC=2;AF=0.41;AFR_AF=0.40;AMR_AF=0.39;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4089;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171071369 rs4667626 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.92;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9429;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171073887 rs2161916 G A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.59;AMR_AF=0.47;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5626;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171225841 rs4668246 A G 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.39;AVGPOST=0.9701;ERATE=0.0115;EUR_AF=0.40;LDAF=0.3233;RSQ=0.9548;SNPSOURCE=LOWCOV,EXOME;THETA=0.0266;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171239560 rs12471568 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2291;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 171240249 rs11675394 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2328;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 171259308 rs17579757 T G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.23;AN=2;ASN_AF=0.54;AVGPOST=0.9915;ERATE=0.0063;EUR_AF=0.13;LDAF=0.2532;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 171260708 rs10930425 C A 100 PASS AA=c;AC=2;AF=0.79;AFR_AF=0.64;AMR_AF=0.89;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7907;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171260787 rs6736609 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.64;AMR_AF=0.89;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.90;LDAF=0.7906;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171260797 rs33962844 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.02;AMR_AF=0.36;AN=2;ASN_AF=0.25;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.35;LDAF=0.2514;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 171260820 rs6751520 T C 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.64;AMR_AF=0.89;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7912;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171264179 rs72876321 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.07;LDAF=0.1884;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 171319997 rs12477518 A C 100 PASS AA=A;AC=2;AF=0.38;AFR_AF=0.19;AMR_AF=0.47;AN=2;ASN_AF=0.18;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.61;LDAF=0.3811;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 171355198 rs6761297 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171356274 rs10185178 G A 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9174;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171508262 rs6724627 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.66;AMR_AF=0.41;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4035;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 171572940 rs3749036 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.49;AMR_AF=0.40;AN=2;ASN_AF=0.56;AVGPOST=0.9829;ERATE=0.0006;EUR_AF=0.31;LDAF=0.4337;RSQ=0.9718;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.96,-0.00 +2 171702480 rs701492 C T 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2742;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171702585 rs701491 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 171818289 rs2557804 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 171822466 rs4668356 C T 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.56;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0010;EUR_AF=0.94;LDAF=0.8585;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 172291616 rs6751956 C T 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.38;AMR_AF=0.33;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2923;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 172330393 rs3731983 A G 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1979;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 172336541 rs3731981 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1965;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 172398311 rs7586144 T C 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.79;AMR_AF=0.73;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.75;LDAF=0.7888;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 172411273 rs10455 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.91;AMR_AF=0.64;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.6486;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 172549248 rs6433311 A G 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.54;AMR_AF=0.74;AN=2;ASN_AF=0.79;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.73;LDAF=0.7050;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 172712480 rs2056202 T C 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.56;AMR_AF=0.67;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.7738;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 172725301 rs1878583 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.59;AMR_AF=0.78;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.8199;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 172864845 rs6730085 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.21;AMR_AF=0.38;AN=2;ASN_AF=0.15;AVGPOST=0.9886;ERATE=0.0014;EUR_AF=0.54;LDAF=0.3407;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.01,-1.92 +2 172945107 rs12473549 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0256;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 172966250 rs2228184 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.12;AMR_AF=0.29;AN=2;ASN_AF=0.69;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3944;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 172967302 rs743605 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.25;AMR_AF=0.40;AN=2;ASN_AF=0.15;AVGPOST=0.9929;ERATE=0.0006;EUR_AF=0.46;LDAF=0.3250;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:0.950:-0.35,-0.41,-0.78 +2 173292709 rs6744873 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.88;AVGPOST=0.9879;ERATE=0.0003;EUR_AF=0.20;LDAF=0.4749;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +2 173292713 rs6716540 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.46;AMR_AF=0.37;AN=2;ASN_AF=0.84;AVGPOST=0.9876;ERATE=0.0009;EUR_AF=0.20;LDAF=0.4551;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 173292728 rs6731763 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.47;AMR_AF=0.40;AN=2;ASN_AF=0.88;AVGPOST=0.9829;ERATE=0.0007;EUR_AF=0.21;LDAF=0.4724;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.08,-0.00 +2 173333840 rs1574028 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0425;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 173339808 rs11895564 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.33;AMR_AF=0.27;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.28;LDAF=0.2395;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 173344474 rs1920979 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.50;AMR_AF=0.36;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3683;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 173352103 rs2293649 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.21;AMR_AF=0.34;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3313;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 173355907 rs56084828 A C 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.0020;AMR_AF=0.17;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1874;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 173659913 rs7585729 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9817;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 173686663 rs2258180 G T 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.51;AMR_AF=0.49;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5285;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 173848287 rs17301507 C G 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.11;AN=2;ASN_AF=0.0017;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0263;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 173883549 rs2242079 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0700;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 173898719 rs2290376 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0380;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 174068513 rs11899707 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 174074407 rs2289396 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.32;AMR_AF=0.55;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4717;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 174094500 rs16861404 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2408;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 174131392 rs35608243 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.21;AN=2;ASN_AF=0.05;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.09;LDAF=0.1069;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 174131525 rs111588144 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.09;AN=2;ASN_AF=0.11;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0956;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 174229731 rs13382180 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.27;AMR_AF=0.11;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.04;LDAF=0.1740;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 174230153 rs2288993 C G 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.80;AMR_AF=0.84;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8738;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 175263218 rs10930660 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.10;AMR_AF=0.37;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3446;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 175306804 rs7574442 C G 100 PASS AA=C;AC=2;AF=0.35;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3455;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 175335076 rs2358637 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 175436940 rs4972450 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9461;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 175622788 rs2646164 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 175742547 rs77698806 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0005;LDAF=0.0088;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 175994967 rs62184479 A C 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0283;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 176046167 rs41270205 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0288;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +2 176964904 rs847151 G A 100 PASS AA=G;AC=2;AF=0.29;AFR_AF=0.49;AMR_AF=0.42;AN=2;ASN_AF=0.05;AVGPOST=0.9951;ERATE=0.0008;EUR_AF=0.29;LDAF=0.2953;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 176965086 rs35817516 G A 100 PASS AA=G;AC=2;AF=0.07;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.0035;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.11;LDAF=0.0737;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +2 176996023 rs4972804 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.15;AMR_AF=0.60;AN=2;ASN_AF=0.34;AVGPOST=0.9974;ERATE=0.0043;EUR_AF=0.67;LDAF=0.4572;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 177036211 rs2857535 G A 100 PASS AA=g;AC=2;AF=0.52;AFR_AF=0.51;AMR_AF=0.54;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.36;LDAF=0.5243;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.09,-0.00 +2 177036754 rs1051929 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.94;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7631;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +2 178417142 rs11694988 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8946;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 178417225 rs11695035 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8940;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.85,-0.00 +2 178481818 rs10497497 G T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.83;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.87;LDAF=0.9008;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +2 178482094 rs28630685 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.70;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9418;ERATE=0.0341;EUR_AF=0.81;LDAF=0.8245;RSQ=0.8798;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.69,-0.01 +2 178528703 rs13025391 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.66;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8597;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 178534324 rs6433687 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.64;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8560;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 178540293 rs3770016 A G 100 PASS AA=a;AC=2;AF=0.73;AFR_AF=0.32;AMR_AF=0.82;AN=2;ASN_AF=0.88;AVGPOST=0.9994;ERATE=0.0017;EUR_AF=0.82;LDAF=0.7260;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +2 178565815 rs10201180 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.76;AMR_AF=0.83;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7944;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 178936373 rs1435573 T G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.78;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.8875;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 178936614 rs6433711 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9908;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 178977620 rs2276622 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.08;AMR_AF=0.42;AN=2;ASN_AF=0.57;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3648;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.200:-5.00,-0.70,-0.10 +2 179185051 rs12478760 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.17;AMR_AF=0.32;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.17;LDAF=0.2234;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 179189012 rs1434083 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.17;LDAF=0.2006;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 179196233 rs12471790 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1994;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 179203797 rs1434087 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.87;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9168;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 179208974 rs12464380 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.13;AMR_AF=0.22;AN=2;AVGPOST=0.9983;ERATE=0.0052;EUR_AF=0.16;LDAF=0.1214;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 179236831 rs6433724 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.64;AMR_AF=0.52;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.6426;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 179251779 rs3731758 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0503;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 179255962 rs3765020 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.01;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0503;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 179296821 rs3997876 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9978;ERATE=0.0064;EUR_AF=0.25;LDAF=0.2304;RSQ=0.9936;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 179300971 . G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.26;AN=2;ASN_AF=0.28;AVGPOST=0.9978;ERATE=0.0058;EUR_AF=0.25;LDAF=0.2260;RSQ=0.9933;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 179300979 rs77419724 A T 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.09;AVGPOST=0.9979;ERATE=0.0155;EUR_AF=0.16;LDAF=0.1179;RSQ=0.9909;SNPSOURCE=EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 179309165 rs75862065 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9955;ERATE=0.0385;EUR_AF=0.10;LDAF=0.0774;RSQ=0.9742;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.62,-0.00,-5.00 +2 179315757 rs9406386 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.12;AVGPOST=0.8808;ERATE=0.0505;EUR_AF=0.22;LDAF=0.2055;RSQ=0.7403;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.35 +2 179325816 rs79399438 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.01;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0540;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 179341953 rs6704545 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.55;AMR_AF=0.22;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.4022;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 179974761 rs2305170 A C 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0604;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 180016141 rs17363449 G C 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.0020;AMR_AF=0.05;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0601;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 180047908 rs6757681 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.81;AMR_AF=0.80;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8327;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 180311207 rs2271760 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 180810180 rs59139193 C T 100 PASS AA=c;AC=1;AF=0.62;AFR_AF=0.66;AMR_AF=0.48;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6189;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 180810264 rs6433818 A T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9424;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 180810358 rs71425650 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1845;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 180815528 rs2304858 A T 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.66;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6201;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 180835589 rs4894140 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9976;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 182344837 rs201528483 A G 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 182350743 rs155103 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.67;AMR_AF=0.80;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.80;LDAF=0.7248;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 182374534 rs1143674 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.68;AMR_AF=0.58;AN=2;ASN_AF=0.61;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5877;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182376546 rs1466109 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9747;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 182395345 rs1143676 G A 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.74;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7404;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 182399097 rs7562325 T C 100 PASS AA=T;AC=1;AF=0.59;AFR_AF=0.65;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5863;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182399638 rs2124443 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 182403851 rs10180793 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9894;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 182413238 rs72883670 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1911;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 182413259 rs12997453 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.63;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5809;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182413602 rs13003064 A T 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.63;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5809;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182414358 rs12623687 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1728;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 182430120 rs7604902 C A 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.36;AMR_AF=0.27;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2401;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182468803 rs61750041 T G 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1938;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 182468818 rs6433923 A T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.58;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2267;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182468855 rs6433924 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.58;AMR_AF=0.21;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2267;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182521578 rs1473295 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.23;AMR_AF=0.49;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4751;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 182543455 rs1801262 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.74;AMR_AF=0.70;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7329;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +2 182780126 rs78774163 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0465;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182783653 rs2303553 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0435;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182926144 rs3754930 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1186;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 182928555 rs1196161 G C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.79;AMR_AF=0.92;AN=2;ASN_AF=0.79;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8737;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 183070619 rs1344773 A T 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.22;AMR_AF=0.31;AN=2;ASN_AF=0.27;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2987;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 183088584 rs3754929 G A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.72;AMR_AF=0.68;AN=2;ASN_AF=0.74;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6885;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 183799558 rs9288088 G C 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.31;AMR_AF=0.78;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7290;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 183827018 rs2271671 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.25;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6581;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 185798504 rs4667000 A C 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.08;AMR_AF=0.61;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 185800905 rs12476147 A T 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.44;AMR_AF=0.68;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.64;LDAF=0.6600;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 185801747 rs4667001 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.08;AMR_AF=0.61;AN=2;ASN_AF=0.86;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5553;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 185801755 rs4667002 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8325;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 185802243 rs1366842 C A 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.08;AMR_AF=0.61;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5553;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 185802363 rs12477430 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.63;AMR_AF=0.74;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.71;LDAF=0.7450;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 187455278 rs9333287 C T 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.57;AMR_AF=0.72;AN=2;ASN_AF=0.85;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7234;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 187487160 rs9333288 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.73;AMR_AF=0.72;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7591;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 187498107 rs9333289 T C 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.1838;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 187501742 rs16828136 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0252;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 187503226 rs4667108 T C 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.49;AMR_AF=0.50;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.5347;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 187511466 rs3738918 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.04;AVGPOST=0.9987;ERATE=0.0058;EUR_AF=0.01;LDAF=0.0518;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 187519338 rs9333290 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.01;AMR_AF=0.22;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.31;LDAF=0.1568;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 187532417 rs2230616 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 187626338 rs13026081 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.33;LDAF=0.1695;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 187698751 rs7559533 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.11;AMR_AF=0.27;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.1856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 188216807 rs858745 T C 100 PASS AA=T;AC=2;AF=0.85;AFR_AF=0.93;AMR_AF=0.84;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8473;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 188243633 rs3771084 A G 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.36;AMR_AF=0.58;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5832;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 188250301 rs698577 T A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 188332692 rs8176592 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.43;AMR_AF=0.31;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2866;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 188343497 rs7586970 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.38;AMR_AF=0.29;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2724;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 189866199 rs2271682 T A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.66;AMR_AF=0.71;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7545;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 189868958 rs144780447 G A 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0019;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 189875421 rs1516446 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 189901295 rs12693526 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.67;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.6809;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 189907937 rs6434312 A G 100 PASS AA=G;AC=1;AF=0.93;AFR_AF=0.96;AMR_AF=0.89;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0018;EUR_AF=0.98;LDAF=0.9341;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 189925548 rs6414122 T A 100 PASS AA=A;AC=1;AF=0.95;AFR_AF=0.94;AMR_AF=0.89;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9483;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 189932831 rs2229495 T C 100 PASS AA=C;AC=1;AF=0.95;AFR_AF=0.94;AMR_AF=0.89;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9497;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 189974958 rs4128539 G T 100 PASS AA=T;AC=1;AF=0.91;AFR_AF=0.88;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9113;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 189975187 rs117917418 A C 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0315;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 190323530 rs1157910 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.31;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5652;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 190430177 rs2304704 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.19;AMR_AF=0.68;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5804;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 190444630 rs1439816 C G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.28;AMR_AF=0.77;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.86;LDAF=0.7066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 190531426 rs1437880 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9858;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 190531615 rs3828267 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.31;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1376;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 190617643 rs2243876 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9941;ERATE=0.0018;EUR_AF=1.00;LDAF=0.9716;RSQ=0.9254;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 190640475 rs3816196 A G 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.24;AMR_AF=0.68;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6147;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 190647108 rs10168387 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=0.9544;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 190925045 rs35781413 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0082;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 191159232 rs188339 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.76;LDAF=0.6687;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 191161622 rs1058180 T C 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6677;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 191224927 rs2067404 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0123;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 191224981 rs4656 G T 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.66;AMR_AF=0.33;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4484;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 191231458 rs11544940 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.77;AMR_AF=0.76;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7015;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 191231503 rs10931450 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.25;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3074;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 191235901 rs1882891 A C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8556;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 191301368 rs9646748 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.40;AMR_AF=0.60;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0024;EUR_AF=0.45;LDAF=0.5077;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 191354491 rs3811609 T C 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3510;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 191854423 rs2066797 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.16;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1220;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 191862901 rs2066805 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0361;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 191922841 rs3024866 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.16;AMR_AF=0.60;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.5355;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 192160839 rs4853574 A T 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.36;AMR_AF=0.53;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5453;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 192160875 rs4853575 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.36;AMR_AF=0.53;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5453;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 192250568 rs13026888 T C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.41;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8135;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 192250726 rs13018796 G A 100 PASS AA=G;AC=1;AF=0.81;AFR_AF=0.39;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.97;LDAF=0.8094;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 192272933 rs2271768 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.49;AMR_AF=0.14;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1654;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 192279327 rs2271767 T C 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.27;AMR_AF=0.85;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.7806;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 192701393 rs10167187 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.53;AMR_AF=0.64;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6210;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 192711162 rs4471838 A C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.69;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9246;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 193056737 rs3768702 C A 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2797;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 196659034 rs17442764 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.15;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1078;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 196673533 rs13411834 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9693;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 196753123 rs200813965 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0014;RSQ=0.9244;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 196765098 rs148270536 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=0.9964;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0171;RSQ=0.9297;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 196791276 rs1489802 T G 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.11;AMR_AF=0.54;AN=2;ASN_AF=0.59;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5009;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 196822004 rs62623378 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0502;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 196825256 rs115124743 G C 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0240;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 196849453 rs17363011 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0795;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 196851911 rs10931715 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.17;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9987;ERATE=0.0006;EUR_AF=0.68;LDAF=0.5516;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 196866420 rs6434811 C T 100 PASS AA=C;AC=2;AF=0.67;AFR_AF=0.19;AMR_AF=0.79;AN=2;ASN_AF=0.68;AVGPOST=0.9985;ERATE=0.0021;EUR_AF=0.90;LDAF=0.6670;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 196891449 rs1072600 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.58;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5024;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 196912067 rs4850381 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.77;AMR_AF=0.73;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.74;LDAF=0.7846;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 196915991 rs10174065 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.76;AMR_AF=0.73;AN=2;ASN_AF=0.89;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7825;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 197004439 rs1054537 A G 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.61;AMR_AF=0.70;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 197010823 rs2271888 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.13;AMR_AF=0.55;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4886;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 197021141 rs6712829 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.14;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.62;LDAF=0.4957;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 197021276 rs10931726 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.12;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4905;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 197021372 rs12478353 T A 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.46;AMR_AF=0.67;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6705;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 197065964 rs3820908 C A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.58;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0010;EUR_AF=0.70;LDAF=0.7154;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 197093005 rs3748874 A C 100 PASS 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AA=T;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0576;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 197171175 rs4241189 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.57;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7678;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 197171183 rs12468199 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.17;AMR_AF=0.63;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5786;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 197172816 rs2305567 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.57;AMR_AF=0.76;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.7678;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 197184321 rs1531111 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.41;AMR_AF=0.80;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7675;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 197504545 rs1879128 C G 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.51;AMR_AF=0.75;AN=2;ASN_AF=0.93;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7274;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.14 +2 197541296 rs17271281 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.08;AMR_AF=0.10;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.13;LDAF=0.0800;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 197761824 rs332300 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.46;AMR_AF=0.18;AN=2;ASN_AF=0.08;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2201;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 197777589 rs12693800 C T 100 PASS AA=T;AC=1;AF=0.93;AFR_AF=0.92;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9250;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 198257795 rs4685 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.88;AMR_AF=0.64;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0025;EUR_AF=0.72;LDAF=0.7103;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 198263146 rs16865262 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1989;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 198265173 rs788017 T A 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.77;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=0.9840;ERATE=0.0519;EUR_AF=0.67;LDAF=0.6379;RSQ=0.9719;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 198265526 rs788018 A G 100 PASS 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AA=T;AC=2;AF=0.66;AFR_AF=0.75;AMR_AF=0.63;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6631;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 198363504 rs1050347 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.11;AMR_AF=0.18;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1857;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 198365788 rs2305560 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.18;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1609;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 198508951 rs10497806 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.86;AMR_AF=0.64;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6787;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 198571709 rs141544058 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0004;LDAF=0.0083;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 200173684 rs10153730 T G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9410;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +2 200245245 rs1348813 C G 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.30;AMR_AF=0.66;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5283;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 200820505 rs281766 T G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.87;AMR_AF=0.90;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8357;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 201253956 rs842823 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.16;AVGPOST=0.9954;ERATE=0.0014;EUR_AF=0.33;LDAF=0.2381;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 201254049 rs3820881 G C 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.38;AMR_AF=0.82;AN=2;ASN_AF=0.82;AVGPOST=0.9915;ERATE=0.0111;EUR_AF=0.81;LDAF=0.7149;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.54,-0.00 +2 201277181 rs6706953 T C 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.37;AMR_AF=0.54;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.56;LDAF=0.4414;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 201342616 rs117996228 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=0.9928;ERATE=0.0026;EUR_AF=0.01;LDAF=0.0426;RSQ=0.9333;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 201354935 rs3795969 C G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.19;AMR_AF=0.34;AN=2;ASN_AF=0.46;AVGPOST=0.9952;ERATE=0.0220;EUR_AF=0.37;LDAF=0.3505;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 201371768 rs3739116 G T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.79;LDAF=0.7848;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 201399917 rs10497848 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0644;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 201436555 rs17448235 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.16;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1010;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 201437048 rs17532665 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.15;LDAF=0.0750;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 201437334 rs12052989 T C 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.71;AMR_AF=0.69;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7587;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 201460104 rs7597590 A G 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2966;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 201464295 rs10179964 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.66;AMR_AF=0.59;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.6426;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 201468732 rs2293525 C G 100 PASS 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AA=T;AC=2;AF=0.76;AFR_AF=0.95;AMR_AF=0.71;AN=2;ASN_AF=0.79;AVGPOST=0.9973;ERATE=0.0016;EUR_AF=0.63;LDAF=0.7591;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 205969220 rs2289025 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.49;AMR_AF=0.71;AN=2;ASN_AF=0.80;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6450;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 205990353 rs2276676 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.13;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3086;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 206364737 rs10197347 T C 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.34;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4437;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 206418032 rs6730102 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9510;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 206562250 rs849558 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.80;AMR_AF=0.94;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0045;EUR_AF=0.98;LDAF=0.9058;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 206581033 rs849541 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0012;EUR_AF=1.00;LDAF=0.9712;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 206592695 rs849526 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.08;AMR_AF=0.55;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5187;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 206608039 rs849568 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9698;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 206610502 rs849563 T G 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=0.13;LDAF=0.2445;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 206921451 rs818009 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.57;AMR_AF=0.74;AN=2;ASN_AF=0.76;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.76;LDAF=0.7129;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 206995010 rs4147725 A G 100 PASS AA=a;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.34;LDAF=0.3262;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207006676 rs1801318 T C 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3286;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207006825 rs4147718 C A 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.48;AMR_AF=0.54;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4077;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 207008763 rs1127566 C A 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.61;AMR_AF=0.58;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4700;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 207025444 rs11689362 T C 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4675;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 207041053 rs3732083 T C 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.63;AMR_AF=0.58;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4717;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 207041441 rs3732082 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.45;AMR_AF=0.36;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3588;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207172627 rs7582864 A G 100 PASS AA=a;AC=1;AF=0.47;AFR_AF=0.37;AMR_AF=0.58;AN=2;ASN_AF=0.36;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.57;LDAF=0.4697;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207174316 rs3732084 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.42;AMR_AF=0.59;AN=2;ASN_AF=0.36;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.57;LDAF=0.4841;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207527840 rs2115591 G T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.62;AMR_AF=0.45;AN=2;ASN_AF=0.19;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3938;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 207564886 rs200369556 G T 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0043;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 207569715 rs16838626 T C 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.34;AMR_AF=0.26;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3452;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.51,-0.00 +2 207603234 rs2287631 T G 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.60;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 207605733 rs10197325 C T 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.60;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.3803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 207621759 rs1990849 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 207820276 rs13420911 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.39;AMR_AF=0.30;AN=2;ASN_AF=0.39;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3934;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207824384 rs11903403 T G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.51;AMR_AF=0.31;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0023;EUR_AF=0.45;LDAF=0.4259;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207825656 rs13397039 A T 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.29;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3922;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207833848 rs7582092 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.75;AMR_AF=0.49;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6311;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 207988613 rs2700166 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0018;EUR_AF=1.00;LDAF=0.9655;RSQ=0.9892;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +2 208477852 rs2551949 G A 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 208477956 rs2709416 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 208478055 rs17520056 A G 100 PASS AA=A;AC=2;AF=0.31;AFR_AF=0.24;AMR_AF=0.30;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3107;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 208633413 rs4675711 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9901;RSQ=0.8814;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.14,-0.00 +2 208841964 rs4441448 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.61;AMR_AF=0.67;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.74;LDAF=0.6248;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 208986385 rs2305429 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.90;AMR_AF=0.82;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.8313;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 208986637 rs2305430 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.80;AMR_AF=0.79;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.92;LDAF=0.7915;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 208988920 rs202233735 G C 100 PASS AA=G;AC=1;AF=0.0037;AMR_AF=0.01;AN=2;ASN_AF=0.0035;AVGPOST=0.9994;ERATE=0.0013;EUR_AF=0.0013;LDAF=0.0039;RSQ=0.9414;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +2 209007559 rs796287 T G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.65;AMR_AF=0.57;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.72;LDAF=0.6348;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 209010558 rs2854723 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.40;AMR_AF=0.33;AN=2;ASN_AF=0.26;AVGPOST=0.9988;ERATE=0.0013;EUR_AF=0.51;LDAF=0.3904;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 209028191 rs796280 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.20;AMR_AF=0.36;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.20;LDAF=0.3195;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 209030578 rs796281 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.24;AMR_AF=0.35;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3207;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 209035658 rs6748431 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9840;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209036712 rs10804166 T C 100 PASS AA=T;AC=1;AF=0.87;AFR_AF=0.78;AMR_AF=0.93;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8724;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 209036778 rs6435421 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9840;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209104007 rs193249271 G A 100 PASS AA=G;AC=1;AF=0.0032;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0032;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 209138297 rs4675744 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0092;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 209168853 rs893256 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209184980 rs10932258 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209184999 rs10932259 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9374;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209190330 rs2363468 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9378;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209190519 rs893254 A T 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.78;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=0.9867;ERATE=0.0031;EUR_AF=0.98;LDAF=0.9127;RSQ=0.9417;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209190528 rs893253 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9345;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209191082 rs1529979 C A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209191099 rs1529978 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209204714 rs2289171 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.46;AN=2;ASN_AF=0.39;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3513;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 209209827 rs2304544 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209212707 rs2304545 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.35;AMR_AF=0.84;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.87;LDAF=0.7605;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209214770 rs2118297 A G 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209215448 rs994696 A G 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209215586 rs994697 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.81;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9374;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 209219415 rs138153736 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0092;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 209315573 rs1370371 G A 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.28;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.67;LDAF=0.6312;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 209358027 rs3820900 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.83;AMR_AF=0.82;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7322;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 210517915 rs2271252 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.50;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2189;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 210557380 rs6720659 C T 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.24;AMR_AF=0.08;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 210557542 rs741007 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.53;AMR_AF=0.12;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.2276;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 210558162 rs741006 G A 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.24;AMR_AF=0.08;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1426;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 210559960 rs2239672 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1207;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 210594540 rs4673486 A G 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.45;AMR_AF=0.88;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7687;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 210594722 rs77505136 T A 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.19;AVGPOST=0.9990;ERATE=0.0012;EUR_AF=0.07;LDAF=0.1188;RSQ=0.9960;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 210636747 rs116428671 G C 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.30;AMR_AF=0.09;AN=2;ASN_AF=0.21;AVGPOST=0.9955;ERATE=0.0005;EUR_AF=0.07;LDAF=0.1640;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:0.900:-0.43,-0.21,-2.17 +2 210882171 rs2075116 A T 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.10;AMR_AF=0.47;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.49;LDAF=0.3963;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 211060050 rs2286963 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2285;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 211069438 rs263677 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 211074909 rs3764913 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2301;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 211319824 rs2287432 T C 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6876;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 211341156 rs2287418 C G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.20;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4606;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 211342502 rs17552879 G A 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.20;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4603;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 212251864 rs3748962 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.32;LDAF=0.2559;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 214012405 rs6738070 A C 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.85;AMR_AF=0.90;AN=2;ASN_AF=0.95;AVGPOST=0.9950;ERATE=0.0339;EUR_AF=0.92;LDAF=0.9082;RSQ=0.9771;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 214174925 rs79574940 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.11;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0453;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 214228792 rs12469417 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 214727221 rs2042791 A C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.22;AMR_AF=0.37;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0013;EUR_AF=0.38;LDAF=0.3769;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 214727367 rs2042792 C G 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.22;AMR_AF=0.37;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3774;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 215632256 rs2070093 A G 100 PASS AA=a;AC=2;AF=0.73;AFR_AF=0.46;AMR_AF=0.76;AN=2;ASN_AF=0.91;AVGPOST=0.9923;ERATE=0.0132;EUR_AF=0.76;LDAF=0.7333;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 215645545 rs2070096 C G 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.17;AMR_AF=0.21;AN=2;ASN_AF=0.15;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1765;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 215674090 rs35933323 T G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.76;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7741;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.87,-0.06 +2 215674224 rs1048108 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.19;AMR_AF=0.42;AN=2;ASN_AF=0.35;AVGPOST=0.9970;ERATE=0.0006;EUR_AF=0.41;LDAF=0.3464;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-0.11,-0.66,-4.70 +2 215674323 rs1129804 C G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.75;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=0.9943;ERATE=0.0010;EUR_AF=0.74;LDAF=0.7716;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.60,-0.12 +2 215674341 rs17489363 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.76;AMR_AF=0.80;AN=2;ASN_AF=0.81;AVGPOST=0.9978;ERATE=0.0005;EUR_AF=0.74;LDAF=0.7737;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.44,-0.20 +2 215813900 rs73088462 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.31;AMR_AF=0.13;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1426;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 215815807 rs145031776 C A 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 215833415 rs4673925 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.53;AMR_AF=0.56;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4457;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 215851246 rs7559069 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 215851303 rs34351934 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.39;AMR_AF=0.24;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0029;EUR_AF=0.09;LDAF=0.1718;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 215854156 rs71428357 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.17;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0687;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 215862383 rs1980844 G A 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.33;AMR_AF=0.73;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7596;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 215869066 rs34644785 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1239;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 215876166 rs7560008 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9982;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 215876371 rs10198064 T C 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.65;AMR_AF=0.26;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.08;LDAF=0.2320;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 215880278 rs76979001 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.02;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0067;RSQ=0.9778;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 215901774 rs17501837 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.17;AMR_AF=0.22;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2569;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 215928972 rs1523721 G C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.80;AMR_AF=0.56;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6558;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216176824 rs28366035 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.33;AVGPOST=0.9852;ERATE=0.0020;EUR_AF=0.16;LDAF=0.1818;RSQ=0.9644;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.10,-0.70,-5.00 +2 216184482 rs16853782 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.22;AMR_AF=0.25;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2934;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216190691 rs2177737 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216191515 rs6751557 C T 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.53;AMR_AF=0.46;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4397;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 216191533 rs78562722 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2861;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216211712 rs10932609 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216235089 rs1250209 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216242917 rs1132741 T A 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.08;AMR_AF=0.38;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3848;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216243832 rs1250204 T C 100 PASS AA=t;AC=2;AF=0.94;AFR_AF=0.85;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9433;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216249587 rs13652 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8866;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216251697 rs35343655 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.24;AMR_AF=0.40;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4214;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216262621 rs6725958 A C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.61;AMR_AF=0.65;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7048;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216272819 rs7570208 C G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.64;AMR_AF=0.65;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7103;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216272900 rs2577301 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 216272907 rs7596677 A T 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.23;AMR_AF=0.43;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4712;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216283958 rs3796123 T A 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.22;AMR_AF=0.43;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4593;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216293098 rs202153198 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 216299550 rs2577290 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.22;AMR_AF=0.37;AN=2;ASN_AF=0.85;AVGPOST=0.9924;ERATE=0.0003;EUR_AF=0.20;LDAF=0.4045;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216299551 rs2692234 C A 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.22;AMR_AF=0.37;AN=2;ASN_AF=0.85;AVGPOST=0.9915;ERATE=0.0017;EUR_AF=0.20;LDAF=0.4020;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216300482 rs1250259 T A 100 PASS AA=A;AC=1;AF=0.86;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.95;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8562;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 216811707 rs1344695 G T 100 PASS AA=T;AC=2;AF=0.46;AFR_AF=0.42;AMR_AF=0.51;AN=2;ASN_AF=0.30;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.57;LDAF=0.4574;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 216878008 rs1864253 C G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.70;AMR_AF=0.68;AN=2;ASN_AF=0.69;AVGPOST=0.9943;ERATE=0.0007;EUR_AF=0.64;LDAF=0.6727;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +2 217012901 rs207906 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.87;AMR_AF=0.88;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8935;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 217057484 rs1805381 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.31;AMR_AF=0.14;AN=2;ASN_AF=0.06;AVGPOST=0.9978;ERATE=0.0064;EUR_AF=0.10;LDAF=0.1447;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 217069151 rs1438162 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.20;AMR_AF=0.54;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4662;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 217069876 rs2287561 T G 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.22;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1202;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 217148417 rs876771 C A 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.32;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4296;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 217279768 rs11555797 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0169;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 217285119 rs2066513 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=0.9918;ERATE=0.0107;EUR_AF=0.01;LDAF=0.0322;RSQ=0.9085;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 217541582 rs2160549 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 218674697 rs918949 C T 100 PASS AA=c;AC=2;AF=0.62;AFR_AF=0.79;AMR_AF=0.62;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6211;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 218678582 rs7559273 C T 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0800;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 218679599 rs2059408 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2053;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.07 +2 218682474 rs12694422 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.30;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3549;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 218682771 rs3796026 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3232;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +2 218683154 rs2571445 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.82;AMR_AF=0.64;AN=2;ASN_AF=0.62;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.60;LDAF=0.6606;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 218683257 rs2571442 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.47;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3928;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 218683368 rs34144104 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2245;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 218694551 rs16858298 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.23;LDAF=0.2239;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 218695146 rs189877000 C T 100 PASS 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AA=G;AC=2;AF=0.47;AFR_AF=0.08;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9988;ERATE=0.0009;EUR_AF=0.59;LDAF=0.4757;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.75,-0.00 +2 219231807 rs3845833 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9902;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219254622 rs2695342 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0013;EUR_AF=1.00;LDAF=0.9832;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219257688 rs2045433 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9864;RSQ=0.9806;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219267781 rs2227255 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.05;AMR_AF=0.59;AN=2;ASN_AF=0.70;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.64;LDAF=0.5133;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219267913 rs2227258 A G 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.30;AMR_AF=0.62;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5773;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219305404 rs2305833 G C 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.07;AMR_AF=0.59;AN=2;ASN_AF=0.75;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5193;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219319657 rs6436058 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219480804 rs485765 G C 100 PASS 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AA=C;AC=2;AF=0.75;AFR_AF=0.76;AMR_AF=0.68;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.63;LDAF=0.7473;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219509618 rs2230115 C A 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.07;AMR_AF=0.60;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5334;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219696014 rs650898 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.89;LDAF=0.9508;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 219903258 rs6736922 T G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.78;LDAF=0.6102;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 219903723 rs4674354 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.62;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6092;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 219903787 rs4672910 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.23;AMR_AF=0.52;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.4515;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 219920037 rs394452 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.96;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.82;LDAF=0.8757;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +2 219920412 rs3731881 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.45;AMR_AF=0.54;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5076;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 219941063 rs897477 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.66;AMR_AF=0.64;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6458;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 220022176 rs6436120 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9383;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220022435 rs2030452 G C 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.23;AMR_AF=0.51;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4396;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 220037393 rs4674361 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220041455 rs6436125 C T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.59;AMR_AF=0.78;AN=2;ASN_AF=0.49;AVGPOST=0.9928;ERATE=0.0006;EUR_AF=0.93;LDAF=0.7147;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +2 220045454 rs2293072 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.05;AMR_AF=0.16;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1842;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220071803 rs6714820 C G 100 PASS AA=c;AC=2;AF=0.77;AFR_AF=0.43;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=0.9942;ERATE=0.0005;EUR_AF=0.91;LDAF=0.7712;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +2 220072766 rs4674366 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9863;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220083279 rs1109866 C T 100 PASS AA=c;AC=2;AF=0.77;AFR_AF=0.43;AMR_AF=0.82;AN=2;ASN_AF=0.85;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.91;LDAF=0.7716;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.94,-0.00 +2 220085845 rs2276633 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.62;AMR_AF=0.96;AN=2;ASN_AF=0.89;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8746;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220113242 rs56772206 T G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9820;ERATE=0.0113;EUR_AF=0.99;LDAF=0.9515;RSQ=0.8669;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220118531 rs939574 G C 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.42;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.91;LDAF=0.7700;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +2 220246218 rs6436148 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.74;AMR_AF=0.98;AN=2;ASN_AF=0.93;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9197;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220250147 rs907679 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9998;RSQ=0.0496;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220250322 rs878437 C A 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.62;AMR_AF=0.97;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8875;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220250826 rs2271456 G A 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.53;AMR_AF=0.96;AN=2;ASN_AF=0.93;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.99;LDAF=0.8658;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220251178 rs2271457 T C 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.64;AMR_AF=0.97;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8922;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220283259 rs1318299 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.64;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9107;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.97,-0.05 +2 220283277 rs2017800 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.60;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9947;ERATE=0.0006;EUR_AF=0.99;LDAF=0.9000;RSQ=0.9815;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.49,-0.17 +2 220284779 rs12991025 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.09;AMR_AF=0.57;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5444;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220315970 rs10932806 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.17;AMR_AF=0.49;AN=2;ASN_AF=0.66;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.50;LDAF=0.4675;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220316579 rs4674399 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.90;AMR_AF=0.94;AN=2;ASN_AF=0.95;AVGPOST=0.9953;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9542;RSQ=0.9612;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-2.97,-0.46,-0.19 +2 220333950 rs10167209 T C 100 PASS AA=t;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9853;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.77,-0.00 +2 220342004 rs45519033 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0447;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220354108 rs55760516 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.52;AMR_AF=0.43;AN=2;ASN_AF=0.25;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3658;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220354542 rs55969678 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9671;ERATE=0.0268;EUR_AF=0.09;LDAF=0.1056;RSQ=0.8611;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220355529 rs12464085 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.56;AMR_AF=0.40;AN=2;ASN_AF=0.19;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3547;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220356632 rs6747090 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0431;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220356806 rs907146 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9679;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220371181 rs10932808 T A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9647;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220379560 rs3731909 C G 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.24;AMR_AF=0.54;AN=2;ASN_AF=0.75;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.65;LDAF=0.5645;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 220399951 rs2276643 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.43;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0014;EUR_AF=0.21;LDAF=0.2463;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220401751 rs2385538 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.37;AMR_AF=0.45;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4026;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220402624 rs11689270 G T 100 PASS AA=T;AC=1;AF=0.74;AFR_AF=0.58;AMR_AF=0.76;AN=2;ASN_AF=0.83;AVGPOST=0.9992;ERATE=0.0015;EUR_AF=0.77;LDAF=0.7419;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.92,-0.00,-5.00 +2 220402665 rs6436153 C A 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1662;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.09 +2 220402671 rs11689281 G T 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.67;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5226;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +2 220402680 rs11695248 T C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.55;AMR_AF=0.53;AN=2;ASN_AF=0.67;AVGPOST=0.9974;ERATE=0.0019;EUR_AF=0.54;LDAF=0.5711;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 220404381 rs1976616 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9802;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220404648 rs1043833 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3573;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220404726 rs1043832 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.22;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=0.46;LDAF=0.3565;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220405230 rs6436154 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.23;AMR_AF=0.44;AN=2;ASN_AF=0.27;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3583;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220405321 rs6436155 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=0.93;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9609;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 220406722 rs3731912 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.66;AMR_AF=0.70;AN=2;ASN_AF=0.76;AVGPOST=0.9964;ERATE=0.0011;EUR_AF=0.74;LDAF=0.7194;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +2 220407918 rs10932810 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9981;ERATE=0.0006;EUR_AF=0.20;LDAF=0.1585;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.97,-0.00,-5.00 +2 220412256 rs8179770 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9757;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220414016 rs6436156 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.75;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9760;ERATE=0.0265;EUR_AF=0.94;LDAF=0.8997;RSQ=0.9073;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220414019 rs13023533 T C 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.39;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9962;ERATE=0.0023;EUR_AF=0.47;LDAF=0.4325;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220416570 rs4672931 C T 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.74;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9893;ERATE=0.0024;EUR_AF=0.99;LDAF=0.9290;RSQ=0.9394;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.57,-0.01 +2 220416803 rs4672933 A T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9978;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9798;RSQ=0.9570;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.78,-0.08 +2 220416942 rs34490902 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.35;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4297;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.42,-0.01,-1.73 +2 220416967 rs4672934 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.36;AMR_AF=0.51;AN=2;ASN_AF=0.59;AVGPOST=0.9905;ERATE=0.0018;EUR_AF=0.51;LDAF=0.4991;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.01,-1.48 +2 220417228 rs60549465 G T 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.23;AMR_AF=0.45;AN=2;ASN_AF=0.40;AVGPOST=0.9947;ERATE=0.0010;EUR_AF=0.48;LDAF=0.3994;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.28,-0.39,-1.15 +2 220417266 rs59332477 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.33;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9933;ERATE=0.0009;EUR_AF=0.47;LDAF=0.4190;RSQ=0.9877;SNPSOURCE=LOWCOV,EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.25,-0.36 +2 220419236 rs10932813 T C 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9986;ERATE=0.0011;EUR_AF=1.00;LDAF=0.9874;RSQ=0.9495;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220419339 rs10932814 T C 100 PASS AA=c;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9660;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 220420956 rs10932816 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9700;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 220421417 rs1983210 C G 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.62;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9971;ERATE=0.0042;EUR_AF=0.73;LDAF=0.6963;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220421456 rs1983211 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9980;ERATE=0.0020;EUR_AF=0.19;LDAF=0.1289;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220422029 rs55873563 G A 100 PASS AA=g;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.11;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1304;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220422774 rs2278201 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.48;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9943;ERATE=0.0020;EUR_AF=0.45;LDAF=0.4494;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220428381 rs2303543 A T 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.29;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9982;ERATE=0.0027;EUR_AF=0.69;LDAF=0.5674;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220430203 rs1039898 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.60;AMR_AF=0.85;AN=2;ASN_AF=0.89;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8249;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220431631 rs1043537 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1667;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220432014 rs61732787 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.06;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1678;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220432709 rs2292360 A T 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.17;AMR_AF=0.33;AN=2;ASN_AF=0.46;AVGPOST=0.9967;ERATE=0.0008;EUR_AF=0.47;LDAF=0.3790;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 220435034 rs10180675 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.58;AMR_AF=0.85;AN=2;ASN_AF=0.89;AVGPOST=0.9976;ERATE=0.0005;EUR_AF=0.91;LDAF=0.8180;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220435375 rs1061399 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.17;AMR_AF=0.33;AN=2;ASN_AF=0.47;AVGPOST=0.9862;ERATE=0.0011;EUR_AF=0.47;LDAF=0.3816;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.03,-0.00,-3.70 +2 220462640 rs681747 G T 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.47;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8587;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 220466199 rs620698 G T 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.35;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.97;LDAF=0.8321;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220471207 rs199837177 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220473355 rs673951 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.04;AMR_AF=0.38;AN=2;ASN_AF=0.71;AVGPOST=0.9879;ERATE=0.0009;EUR_AF=0.37;LDAF=0.3851;RSQ=0.9838;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 220476443 rs627530 C T 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.49;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8638;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220476645 rs581547 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.54;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.8901;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.10,-0.00 +2 220476747 rs148777814 C A 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.04;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0004;LDAF=0.0078;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 220479312 rs624773 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9836;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220494118 rs597306 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9615;RSQ=0.9923;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +2 220496974 rs182991533 C T 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0007;LDAF=0.0098;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 220500423 rs589767 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9520;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.97,-0.00 +2 220500426 rs639214 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.68;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9168;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.91,-0.00 +2 220502367 rs635311 A C 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.45;AMR_AF=0.76;AN=2;ASN_AF=0.84;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.78;LDAF=0.7211;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 220505265 rs684428 T C 100 PASS AA=T;AC=2;AF=0.74;AFR_AF=0.41;AMR_AF=0.78;AN=2;ASN_AF=0.85;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7368;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 222301357 rs3213844 T C 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.30;AMR_AF=0.57;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5836;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 222320427 rs2288627 G A 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.66;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7052;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.18,-0.00 +2 223084833 rs13022712 C T 100 PASS AA=C;AC=2;AF=0.06;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0595;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 223161889 rs12623857 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8904;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +2 223423362 rs4674664 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.70;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8976;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 223436607 rs7185 C T 100 PASS AA=T;AC=1;AF=0.86;AFR_AF=0.67;AMR_AF=0.86;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8583;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 223488979 rs16863940 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0301;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 223787559 rs11891410 G A 100 PASS AA=A;AC=1;AF=0.88;AFR_AF=0.93;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8830;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 223799207 rs935030 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.58,-0.00 +2 223806194 rs1550426 C T 100 PASS AA=-;AC=1;AF=0.87;AFR_AF=0.91;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9899;ERATE=0.0056;EUR_AF=0.77;LDAF=0.8665;RSQ=0.9691;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 223917629 rs3795886 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.68;AMR_AF=0.74;AN=2;ASN_AF=0.63;AVGPOST=0.9958;ERATE=0.0006;EUR_AF=0.72;LDAF=0.6883;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 223917812 rs10201907 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.98;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9653;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 223917983 rs12621643 T G 100 PASS AA=T;AC=2;AF=0.66;AFR_AF=0.51;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6630;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0087;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 223918080 rs10189762 C G 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.89;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9447;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.82,-0.00 +2 224743373 rs571111 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.47;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3930;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 224758906 rs625150 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.90;AMR_AF=0.94;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 224763816 rs530065 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.95;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8953;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 224765894 rs604990 G A 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.95;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8953;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 224765956 rs2272317 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.01;LDAF=0.1024;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 224856650 rs6712954 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.21;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1513;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 225362559 rs143436770 A C 100 PASS AA=A;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.0008;RSQ=0.8255;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 225376032 rs6743816 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.46;AMR_AF=0.11;AN=2;ASN_AF=0.18;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2375;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 225669996 rs4674940 A G 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.20;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.0663;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 225670901 rs4674941 G C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.61;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2189;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 225679031 rs77952666 A C 100 PASS AA=A;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0195;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-1.14,-0.03 +2 225684166 rs7572725 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.61;AMR_AF=0.13;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2194;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 226273689 rs2048936 T C 100 PASS AA=t;AC=2;AF=0.80;AFR_AF=0.96;AMR_AF=0.82;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7982;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 226447735 rs3828256 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.23;AMR_AF=0.70;AN=2;ASN_AF=0.54;AVGPOST=0.9940;ERATE=0.0010;EUR_AF=0.70;LDAF=0.5525;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +2 226491770 rs3748993 A C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=0.85;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9355;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 227661043 rs1801123 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.45;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2330;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 227872182 rs2228557 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.58;AMR_AF=0.47;AN=2;ASN_AF=0.39;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.42;LDAF=0.4574;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227872995 rs2228555 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5984;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227873028 rs13419076 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.59;AMR_AF=0.47;AN=2;ASN_AF=0.39;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4600;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227877037 rs10188770 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.59;AMR_AF=0.48;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4661;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227886773 rs3752895 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.64;AMR_AF=0.48;AN=2;ASN_AF=0.40;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4779;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227886925 rs3752896 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.44;LDAF=0.4149;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227892619 rs3817490 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4518;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227892720 rs2229813 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4517;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227895125 rs1917127 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4506;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227896652 rs13423714 C G 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4516;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227896886 rs2229812 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.44;LDAF=0.4506;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227896976 rs10203363 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4502;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227915832 rs1800517 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.56;AMR_AF=0.51;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5115;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 227922109 rs7567796 T A 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.65;AMR_AF=0.66;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5919;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.15,-0.00 +2 227954599 rs2229814 G A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.50;AMR_AF=0.59;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5176;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 227973623 rs12475686 A G 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.60;AMR_AF=0.57;AN=2;ASN_AF=0.61;AVGPOST=0.9963;ERATE=0.0004;EUR_AF=0.65;LDAF=0.6144;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 227973892 rs73082223 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.75;AMR_AF=0.22;AN=2;ASN_AF=0.33;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.08;LDAF=0.3157;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228102680 rs148393022 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.03;AVGPOST=0.9968;ERATE=0.0004;LDAF=0.0187;RSQ=0.9333;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228102752 rs1882435 C A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.30;AMR_AF=0.30;AN=2;ASN_AF=0.45;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.32;LDAF=0.3473;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228109627 rs55789142 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.24;AMR_AF=0.29;AN=2;ASN_AF=0.33;AVGPOST=0.9378;ERATE=0.1430;EUR_AF=0.32;LDAF=0.3089;RSQ=0.8741;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 228110643 rs112712399 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0242;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 228111435 rs10178458 T C 100 PASS AA=t;AC=2;AF=0.81;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8094;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 228113175 rs6436669 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.61;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8094;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 228115847 rs55667591 A C 100 PASS AA=A;AC=1;AF=0.03;AMR_AF=0.09;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0256;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 228118229 rs200575877 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0007;RSQ=0.8015;SNPSOURCE=EXOME;THETA=0.0319;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228118403 rs12621551 T G 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.69;AMR_AF=0.78;AN=2;ASN_AF=0.91;AVGPOST=0.9856;ERATE=0.0103;EUR_AF=0.81;LDAF=0.8040;RSQ=0.9674;SNPSOURCE=LOWCOV,EXOME;THETA=0.0201;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 228119461 rs35467545 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0972;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228128540 rs10205042 C T 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.67;AMR_AF=0.77;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7596;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 228128568 rs34505188 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0961;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228131169 rs11677877 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1011;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228131752 rs34019152 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0978;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228135631 rs28381984 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.47;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3929;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 228149107 rs6436672 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.76;AMR_AF=0.87;AN=2;ASN_AF=0.76;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8343;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 228197238 rs11557342 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0741;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228204982 rs4442987 C T 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.64;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8492;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 228243905 rs7574414 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1257;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228416712 rs13426457 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.86;AMR_AF=0.74;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7340;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 228476140 rs2176186 C T 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.23;AMR_AF=0.32;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3067;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 228476253 rs2138402 C G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.66;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8789;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 228855958 rs16824284 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.21;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2596;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228855993 rs61752221 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0073;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 228858331 rs183902648 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228882970 rs3828161 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.21;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2505;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 228883721 rs3811514 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.77;AMR_AF=0.61;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.50;LDAF=0.6198;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 229890660 rs34351298 A G 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.12;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0845;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 230663576 rs6720868 C T 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.30;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3336;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 230668858 rs13018957 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.16;AMR_AF=0.47;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3821;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 230668968 rs4972915 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.92;AMR_AF=0.87;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8337;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 230668982 rs4973229 T G 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.16;AMR_AF=0.46;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3800;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 231050715 rs3948464 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.83;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8976;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 231072709 rs1365776 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.93;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7869;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +2 231076289 rs3820974 T G 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.56;AMR_AF=0.57;AN=2;ASN_AF=0.68;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5586;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 231077112 rs28930679 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1705;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 231077154 rs41309096 G A 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.08;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2245;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 231077725 rs1129411 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9410;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 231149108 rs4972946 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.91;LDAF=0.9597;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 232087474 rs1626450 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.77;AMR_AF=0.89;AN=2;ASN_AF=0.88;AVGPOST=0.9783;ERATE=0.0660;EUR_AF=0.83;LDAF=0.8395;RSQ=0.9512;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.00,-2.54 +2 232087475 rs1626451 T A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.76;AMR_AF=0.88;AN=2;ASN_AF=0.89;AVGPOST=0.9707;ERATE=0.0614;EUR_AF=0.84;LDAF=0.8462;RSQ=0.9346;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 232326417 rs1131171 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.45;AMR_AF=0.31;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3776;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 232327880 rs59474219 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.13;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1595;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 232389744 rs3752762 A G 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.18;AMR_AF=0.41;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3327;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 232390151 rs3752763 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.18;AMR_AF=0.41;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3323;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 232458443 rs10933378 T C 100 PASS AA=c;AC=2;AF=0.94;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9375;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 233201328 rs3811578 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.19;AN=2;ASN_AF=0.49;AVGPOST=0.9730;ERATE=0.0150;EUR_AF=0.08;LDAF=0.2206;RSQ=0.9473;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.50,-0.17 +2 233243660 rs2014448 T C 100 PASS AA=.;AC=1;AF=0.92;AFR_AF=0.97;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9761;ERATE=0.0045;EUR_AF=0.93;LDAF=0.9174;RSQ=0.9031;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233243793 . C T 100 PASS AA=.;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0105;RSQ=0.9674;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.950:-0.42,-0.21,-5.00 +2 233243796 rs200958062 T C 100 PASS AA=.;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0106;RSQ=0.9693;SNPSOURCE=EXOME;THETA=0.0066;VT=SNP GT:DS:GL 0|1:0.950:-0.72,-0.09,-5.00 +2 233243876 rs4973525 G T 100 PASS AA=.;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0233;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 233244586 rs2853374 C G 100 PASS AA=.;AC=1;AF=0.92;AFR_AF=0.99;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=0.9702;ERATE=0.0059;EUR_AF=0.91;LDAF=0.9119;RSQ=0.8749;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233272528 rs6728119 G T 100 PASS AA=g;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.04;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1019;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233322701 rs201251145 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233346455 rs68130818 C G 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.02;AN=2;ASN_AF=0.05;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0520;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233347919 rs6750085 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.18;AMR_AF=0.42;AN=2;ASN_AF=0.26;AVGPOST=0.9973;ERATE=0.0007;EUR_AF=0.45;LDAF=0.3375;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.65 +2 233349588 rs1529874 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9653;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 233350000 rs2573246 C G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.44;AMR_AF=0.73;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.75;LDAF=0.6839;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +2 233390937 rs2245601 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.32;AMR_AF=0.50;AN=2;ASN_AF=0.66;AVGPOST=0.9989;ERATE=0.0011;EUR_AF=0.46;LDAF=0.4862;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 233396025 rs41265125 G A 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0010;EUR_AF=0.09;LDAF=0.0479;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233408283 rs13018423 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.10;AMR_AF=0.41;AN=2;ASN_AF=0.47;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3068;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 233428927 rs1656397 G C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.42;AMR_AF=0.41;AN=2;ASN_AF=0.30;AVGPOST=0.9986;ERATE=0.0041;EUR_AF=0.27;LDAF=0.3337;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 233537125 rs11550699 A G 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.15;AMR_AF=0.42;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3460;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 233599904 rs11555646 A C 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2867;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 233633460 rs1801251 G A 100 PASS AA=A;AC=2;AF=0.29;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2870;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 233641083 rs737027 G C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.77;AMR_AF=0.58;AN=2;ASN_AF=0.61;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6338;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.21,-0.03 +2 233757697 rs895432 A G 100 PASS AA=G;AC=1;AF=0.96;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9569;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233759650 rs75269119 T A 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0795;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233785015 rs778354 G A 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.78;AMR_AF=0.81;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7190;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 233834975 rs4973588 A G 100 PASS AA=a;AC=2;AF=0.88;AFR_AF=0.93;AMR_AF=0.90;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8766;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 233835088 rs78336991 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0741;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 233899377 rs2233394 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.29;AMR_AF=0.22;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1656;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234171812 rs13011156 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0341;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234173503 rs12994997 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.25;AMR_AF=0.37;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3886;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 234181593 rs2289475 G C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.65;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6001;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 234183368 rs2241880 A G 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.25;AMR_AF=0.38;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3898;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 234183468 rs2241879 G A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.25;AMR_AF=0.38;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3898;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 234235749 rs2304774 G C 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.16;AMR_AF=0.37;AN=2;ASN_AF=0.39;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3785;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 234238254 rs745498 T G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.84;AMR_AF=0.58;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6742;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 234255547 rs1046974 G A 100 PASS AA=g;AC=1;AF=0.31;AFR_AF=0.06;AMR_AF=0.29;AN=2;ASN_AF=0.39;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3137;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 234449316 rs2167884 G A 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.75;AMR_AF=0.87;AN=2;ASN_AF=0.88;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8121;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 234449462 rs1545525 T C 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.59;AMR_AF=0.85;AN=2;ASN_AF=0.88;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7726;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 234457900 rs3965793 T A 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.25;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6228;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +2 234590616 rs7577677 C A 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.24;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2920;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234590970 rs17868323 T G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.54;AMR_AF=0.51;AN=2;ASN_AF=0.38;AVGPOST=0.9835;ERATE=0.0093;EUR_AF=0.56;LDAF=0.5011;RSQ=0.9802;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234591205 rs11692021 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.24;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2915;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234601669 rs6759892 T G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.38;AMR_AF=0.37;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3442;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234601965 rs1105880 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.33;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3186;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234602191 rs2070959 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.24;AMR_AF=0.27;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2665;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234602202 rs1105879 A C 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3036;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234622429 rs2012734 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.78;AMR_AF=0.50;AN=2;ASN_AF=0.29;AVGPOST=0.9942;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4811;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-4.22 +2 234627937 rs2011404 T C 100 PASS AA=C;AC=1;AF=0.91;AFR_AF=0.96;AMR_AF=0.87;AN=2;ASN_AF=0.99;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.82;LDAF=0.9059;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234637803 rs3821242 T C 100 PASS AA=t;AC=1;AF=0.44;AFR_AF=0.66;AMR_AF=0.47;AN=2;ASN_AF=0.30;AVGPOST=0.9778;ERATE=0.0091;EUR_AF=0.39;LDAF=0.4400;RSQ=0.9698;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234637853 rs6706232 G A 100 PASS AA=a;AC=1;AF=0.49;AFR_AF=0.80;AMR_AF=0.50;AN=2;ASN_AF=0.31;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4883;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-3.11,-0.00,-5.00 +2 234637912 rs6431625 T C 100 PASS AA=N;AC=1;AF=0.37;AFR_AF=0.70;AMR_AF=0.40;AN=2;ASN_AF=0.12;AVGPOST=0.9882;ERATE=0.0062;EUR_AF=0.33;LDAF=0.3671;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.800:-0.54,-0.15,-4.22 +2 234638249 rs7574296 A G 100 PASS AA=N;AC=1;AF=0.49;AFR_AF=0.80;AMR_AF=0.50;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4891;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234750831 rs3806589 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.84;AMR_AF=0.66;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.7176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234758500 rs529963 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.28;AMR_AF=0.17;AN=2;ASN_AF=0.14;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1882;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-2.40,-0.01,-1.67 +2 234762480 rs626110 A T 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.37;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=0.9990;ERATE=0.0017;EUR_AF=0.71;LDAF=0.5820;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234846198 rs1019103 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0016;EUR_AF=1.00;LDAF=0.9978;RSQ=0.7186;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 234905078 rs11563208 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.36;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1948;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 234967539 rs593668 T A 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.58;AMR_AF=0.69;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6558;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 235961424 rs57924475 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.07;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9938;ERATE=0.0008;EUR_AF=0.03;LDAF=0.0354;RSQ=0.9338;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-1.79,-0.01,-5.00 +2 236708166 rs2292708 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2290;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 236839616 rs77020450 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.14;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1281;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.10 +2 236957822 rs2034648 G A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.90;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9956;ERATE=0.0005;EUR_AF=0.51;LDAF=0.6894;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 237029104 rs2278884 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.32;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2800;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 237032523 rs11893568 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.76;AMR_AF=0.22;AN=2;ASN_AF=0.25;AVGPOST=0.9976;ERATE=0.0012;EUR_AF=0.26;LDAF=0.3633;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 237032607 rs11895915 T G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.69;AMR_AF=0.19;AN=2;ASN_AF=0.25;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.26;LDAF=0.3419;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 237032703 rs8178994 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.75;AMR_AF=0.20;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.26;LDAF=0.3579;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 237076096 rs112186240 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.06;AN=2;AVGPOST=0.9896;ERATE=0.0004;EUR_AF=0.13;LDAF=0.0636;RSQ=0.9371;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +2 237105050 rs55818776 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.70;AMR_AF=0.21;AN=2;ASN_AF=0.22;AVGPOST=0.9894;ERATE=0.0036;EUR_AF=0.19;LDAF=0.3198;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 237149941 rs6756597 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.30;AMR_AF=0.48;AN=2;ASN_AF=0.58;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4695;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 237300677 rs10204742 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.16;AMR_AF=0.06;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0627;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 237489904 rs1045879 C T 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.71;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2943;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 238233410 rs4663722 C G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.26;AMR_AF=0.16;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.10;LDAF=0.1723;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 238243464 rs2270669 C G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.97;AMR_AF=0.70;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8035;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 238244963 rs6728818 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.79;AMR_AF=0.58;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6512;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 238249630 rs4433949 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.22;AMR_AF=0.34;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3806;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 238258814 rs3790993 C G 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.59;AMR_AF=0.48;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0008;EUR_AF=0.54;LDAF=0.5814;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 238475826 rs112601669 C A 100 PASS AA=c;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9987;ERATE=0.0006;EUR_AF=0.07;LDAF=0.0348;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 238486767 rs11542159 A G 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0457;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 238494742 rs3751112 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.52;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2468;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 238990388 rs3210400 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.04;AMR_AF=0.43;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.2966;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 238999883 rs1128552 T C 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.21;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1778;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 239006879 rs12993309 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.21;AN=2;ASN_AF=0.24;AVGPOST=0.9918;ERATE=0.0051;EUR_AF=0.20;LDAF=0.2272;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 239009336 rs61744770 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.04;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=0.9950;ERATE=0.0007;EUR_AF=0.47;LDAF=0.2605;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.050:-0.48,-0.48,-0.48 +2 239009384 rs62196013 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=0.9958;ERATE=0.0008;EUR_AF=0.47;LDAF=0.2575;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-0.06,-0.92,-5.00 +2 239010577 rs1562333 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.47;LDAF=0.2573;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 239010690 rs34878344 C A 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1113;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-4.22 +2 239010719 rs36066915 T C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.57;AMR_AF=0.60;AN=2;ASN_AF=0.58;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.70;LDAF=0.6205;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.80,-0.52,-0.15 +2 239016539 rs935415 C G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.81;AMR_AF=0.70;AN=2;ASN_AF=0.69;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7349;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +2 239016640 rs878134 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1141;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.44 +2 239025523 rs11903074 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.82;AMR_AF=0.78;AN=2;ASN_AF=0.79;AVGPOST=0.9713;ERATE=0.0254;EUR_AF=0.82;LDAF=0.7989;RSQ=0.9344;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 239033901 rs10172440 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.82;AMR_AF=0.40;AN=2;ASN_AF=0.56;AVGPOST=0.9881;ERATE=0.0082;EUR_AF=0.33;LDAF=0.5095;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 239034043 rs10170048 A C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.85;AMR_AF=0.50;AN=2;ASN_AF=0.69;AVGPOST=0.9944;ERATE=0.0035;EUR_AF=0.40;LDAF=0.5929;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +2 239036416 rs12692214 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.87;AMR_AF=0.82;AN=2;ASN_AF=0.81;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.86;LDAF=0.8396;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.30,-0.02 +2 239036423 rs62197371 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.12;AVGPOST=0.9975;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2462;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.56 +2 239039057 rs13033248 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9856;ERATE=0.0028;EUR_AF=0.38;LDAF=0.3917;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 239039075 rs13006204 G T 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.36;AMR_AF=0.41;AN=2;ASN_AF=0.41;AVGPOST=0.9880;ERATE=0.0004;EUR_AF=0.37;LDAF=0.3880;RSQ=0.9811;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 239039637 rs4663845 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.92;AVGPOST=0.9927;ERATE=0.0009;EUR_AF=0.71;LDAF=0.8437;RSQ=0.9801;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.17,-0.48,-0.18 +2 239039841 rs10172220 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.65;AMR_AF=0.43;AN=2;ASN_AF=0.52;AVGPOST=0.9462;ERATE=0.0035;EUR_AF=0.45;LDAF=0.5104;RSQ=0.9151;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +2 239039896 rs10182906 G C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.92;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.72;LDAF=0.8444;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +2 239040187 rs12692215 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.97;AMR_AF=0.81;AN=2;ASN_AF=0.92;AVGPOST=0.9942;ERATE=0.0011;EUR_AF=0.72;LDAF=0.8449;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +2 239093788 rs6431588 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8917;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +2 239161957 rs35333999 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0229;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 239165663 rs2304669 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.15;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1225;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 239184581 rs10462023 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.34;LDAF=0.2242;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 239229372 rs13398676 C A 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.76;AMR_AF=0.77;AN=2;ASN_AF=0.50;AVGPOST=0.9907;ERATE=0.0013;EUR_AF=0.76;LDAF=0.6904;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.050:-1.39,-0.38,-0.27 +2 239261866 rs3213874 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1704;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 240029736 rs7585225 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.78;AMR_AF=0.90;AN=2;ASN_AF=0.83;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8223;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +2 240055901 rs2278778 G A 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.18;AMR_AF=0.59;AN=2;ASN_AF=0.87;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5811;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.41,-0.00 +2 240066417 rs2290087 A G 100 PASS AA=G;AC=1;AF=0.86;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.84;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8626;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 240078488 rs76103770 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.09;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1170;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 240098068 rs56211861 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.12;LDAF=0.1309;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 240111521 rs2290092 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.09;AN=2;ASN_AF=0.12;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1019;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.25 +2 240946766 rs13848 T C 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.30;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4122;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 240954110 rs2289407 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3304;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 240961728 rs2083411 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.80;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.9976;ERATE=0.0011;EUR_AF=0.69;LDAF=0.7197;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 240969312 rs10187574 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=0.9880;ERATE=0.0009;EUR_AF=0.38;LDAF=0.3280;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.96 +2 240969483 rs145620667 G A 100 PASS AA=g;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=0.9830;ERATE=0.0010;EUR_AF=0.38;LDAF=0.3152;RSQ=0.9698;SNPSOURCE=EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +2 240981262 rs6728493 A C 100 PASS AA=a;AC=2;AF=0.44;AFR_AF=0.47;AMR_AF=0.37;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4364;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 240981375 rs6732185 T A 100 PASS AA=N;AC=2;AF=0.73;AFR_AF=0.93;AMR_AF=0.60;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7322;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 240982131 rs79839275 A G 100 PASS AA=-;AC=1;AF=0.26;AFR_AF=0.26;AMR_AF=0.22;AN=2;ASN_AF=0.35;AVGPOST=0.9087;ERATE=0.0237;EUR_AF=0.22;LDAF=0.2627;RSQ=0.8466;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.100:-0.48,-0.48,-0.48 +2 240982171 rs78953006 A C 100 PASS AA=-;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.19;AN=2;ASN_AF=0.34;AVGPOST=0.9369;ERATE=0.0122;EUR_AF=0.18;LDAF=0.2388;RSQ=0.8563;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.400:-3.10,-0.47,-0.18 +2 240982173 rs73107451 A G 100 PASS AA=-;AC=2;AF=0.32;AFR_AF=0.33;AMR_AF=0.25;AN=2;ASN_AF=0.49;AVGPOST=0.9469;ERATE=0.0077;EUR_AF=0.24;LDAF=0.3203;RSQ=0.9292;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:1.650:-3.02,-0.47,-0.18 +2 240982201 rs73107452 A G 100 PASS AA=N;AC=2;AF=0.38;AFR_AF=0.39;AMR_AF=0.33;AN=2;ASN_AF=0.52;AVGPOST=0.9551;ERATE=0.0247;EUR_AF=0.30;LDAF=0.3822;RSQ=0.9377;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.950:-4.70,-0.70,-0.10 +2 240982312 rs115609219 G A 100 PASS AA=N;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0353;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.34,-0.00,-5.00 +2 240982443 rs34596708 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.27;AN=2;ASN_AF=0.56;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3615;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +2 240982449 rs35318485 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.27;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3606;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 240984789 rs12465491 C T 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.26;AMR_AF=0.24;AN=2;ASN_AF=0.55;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3527;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 240985099 rs150098707 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.80;AMR_AF=0.54;AN=2;ASN_AF=0.74;AVGPOST=0.9838;ERATE=0.0024;EUR_AF=0.60;LDAF=0.6686;RSQ=0.9717;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.85,-0.07 +2 240985160 rs201725195 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.21;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=0.9963;ERATE=0.0009;EUR_AF=0.03;LDAF=0.0751;RSQ=0.9799;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-2.16,-0.01,-1.60 +2 240985347 rs13030992 G A 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.47;AMR_AF=0.37;AN=2;ASN_AF=0.59;AVGPOST=0.9287;ERATE=0.0292;EUR_AF=0.42;LDAF=0.4583;RSQ=0.9097;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.800:-4.00,-0.53,-0.15 +2 240985511 rs10933560 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.76;AMR_AF=0.45;AN=2;ASN_AF=0.75;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6423;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.01,-1.84 +2 241066280 rs4292120 C T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.96;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.55;LDAF=0.7099;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241073450 rs3749078 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.43;AMR_AF=0.32;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3030;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241075809 rs13406410 C T 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.86;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=0.9784;ERATE=0.0012;EUR_AF=0.51;LDAF=0.6447;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.36,-0.29,-0.32 +2 241403990 rs199587685 G A 100 PASS AA=g;AC=2;AF=0.39;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.19;AVGPOST=0.9314;ERATE=0.0966;EUR_AF=0.43;LDAF=0.3772;RSQ=0.9229;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.72,-0.09 +2 241404317 rs2229458 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.63;AMR_AF=0.56;AN=2;ASN_AF=0.31;AVGPOST=0.9830;ERATE=0.0035;EUR_AF=0.54;LDAF=0.5006;RSQ=0.9763;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +2 241404499 rs2228327 C T 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.33;AMR_AF=0.27;AN=2;ASN_AF=0.11;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2553;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.94,-0.05 +2 241405454 rs6760745 G A 100 PASS AA=g;AC=2;AF=0.36;AFR_AF=0.46;AMR_AF=0.39;AN=2;ASN_AF=0.30;AVGPOST=0.9972;ERATE=0.0021;EUR_AF=0.31;LDAF=0.3571;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +2 241405528 rs2228331 A G 100 PASS AA=g;AC=2;AF=0.64;AFR_AF=0.91;AMR_AF=0.68;AN=2;ASN_AF=0.33;AVGPOST=0.9921;ERATE=0.0037;EUR_AF=0.69;LDAF=0.6416;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 241419090 rs73010211 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0728;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241439337 rs12994534 G A 100 PASS AA=g;AC=1;AF=0.45;AFR_AF=0.19;AMR_AF=0.38;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4517;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241440020 rs12986801 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.33;AMR_AF=0.51;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5595;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241446952 rs74388234 G A 100 PASS AA=g;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0836;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241451351 rs35044862 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.30;AMR_AF=0.23;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1819;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 241452198 rs12695025 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.53;AMR_AF=0.62;AN=2;ASN_AF=0.80;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6751;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241452212 rs12695026 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.80;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.70;LDAF=0.6755;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241463453 rs3821348 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.15;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1531;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241463595 rs35996697 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.18;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=0.9946;ERATE=0.0045;EUR_AF=0.16;LDAF=0.1204;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 241468408 rs115570421 T C 100 PASS AA=T;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.02;AN=2;ASN_AF=0.0035;AVGPOST=0.9988;ERATE=0.0051;EUR_AF=0.02;LDAF=0.0337;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 241496566 rs116475941 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0287;RSQ=0.9798;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 241496567 rs7609147 A G 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.36;AMR_AF=0.34;AN=2;ASN_AF=0.14;AVGPOST=0.9940;ERATE=0.0025;EUR_AF=0.45;LDAF=0.3259;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 241537421 rs3749166 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.30;AMR_AF=0.63;AN=2;ASN_AF=0.64;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5459;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 241538074 rs2975766 A G 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9959;ERATE=0.0020;EUR_AF=0.97;LDAF=0.9857;RSQ=0.8922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.30,-0.02 +2 241569692 rs3749171 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.20;AMR_AF=0.14;AN=2;ASN_AF=0.09;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1558;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 241616119 rs200464367 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.18;AMR_AF=0.26;AN=2;ASN_AF=0.22;AVGPOST=0.6829;ERATE=0.0624;EUR_AF=0.32;LDAF=0.3567;RSQ=0.3272;SNPSOURCE=EXOME;THETA=0.0087;VT=SNP GT:DS:GL 0|1:1.150:-2.57,-0.44,-0.20 +2 241622209 rs4081908 T C 100 PASS AA=.;AC=2;AF=0.63;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.49;AVGPOST=0.8589;ERATE=0.0321;EUR_AF=0.66;LDAF=0.6048;RSQ=0.8257;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.700:-0.48,-0.48,-0.48 +2 241631413 rs71428454 T G 100 PASS AA=.;AC=1;AF=0.21;AFR_AF=0.19;AMR_AF=0.30;AN=2;ASN_AF=0.03;AVGPOST=0.9695;ERATE=0.0013;EUR_AF=0.31;LDAF=0.2103;RSQ=0.9405;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241631476 rs4328629 C G 100 PASS AA=.;AC=2;AF=0.61;AFR_AF=0.81;AMR_AF=0.66;AN=2;ASN_AF=0.54;AVGPOST=0.9462;ERATE=0.0011;EUR_AF=0.50;LDAF=0.6024;RSQ=0.9300;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +2 241631616 rs11889147 T C 100 PASS AA=.;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.06;AN=2;ASN_AF=0.06;AVGPOST=0.9284;ERATE=0.0140;EUR_AF=0.03;LDAF=0.0941;RSQ=0.6997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.10,-0.70 +2 241659368 rs6437368 C A 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.83;AMR_AF=0.76;AN=2;ASN_AF=0.92;AVGPOST=0.9510;ERATE=0.0166;EUR_AF=0.75;LDAF=0.8059;RSQ=0.8860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 241685586 rs73102625 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.06;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0473;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.80 +2 241700307 rs58415613 G T 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0411;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241702561 rs11688298 T A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.73;AMR_AF=0.49;AN=2;ASN_AF=0.67;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6226;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241713646 rs1063353 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.72;AMR_AF=0.32;AN=2;ASN_AF=0.61;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4998;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241726646 rs2288746 A G 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.77;AMR_AF=0.40;AN=2;ASN_AF=0.44;AVGPOST=0.9847;ERATE=0.0078;EUR_AF=0.40;LDAF=0.4952;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 241815307 rs12478859 C T 100 PASS AA=c;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.15;AVGPOST=0.9871;ERATE=0.0172;EUR_AF=0.32;LDAF=0.2199;RSQ=0.9734;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241815308 rs12464426 A G 100 PASS AA=g;AC=1;AF=0.74;AFR_AF=0.94;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9821;ERATE=0.0196;EUR_AF=0.68;LDAF=0.7336;RSQ=0.9691;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 241817516 rs4426527 A G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1367;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 241818279 rs4273214 C A 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.26;AN=2;ASN_AF=0.23;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.42;LDAF=0.2815;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.150:-5.00,-1.83,-0.01 +2 241827696 rs4675869 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.91;AMR_AF=0.59;AN=2;ASN_AF=0.70;AVGPOST=0.9975;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7375;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.13,-0.03 +2 241828012 rs6708304 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.82;AMR_AF=0.38;AN=2;ASN_AF=0.47;AVGPOST=0.9895;ERATE=0.0008;EUR_AF=0.52;LDAF=0.5498;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +2 241828034 rs6707568 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9811;ERATE=0.0009;EUR_AF=0.97;LDAF=0.9783;RSQ=0.6510;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +2 241830944 rs10171053 G T 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.77;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9965;ERATE=0.0012;EUR_AF=0.52;LDAF=0.5150;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 241830969 rs10171067 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.77;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5169;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 241831005 rs10195453 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.77;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5169;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 241834944 rs4468809 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.77;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.52;LDAF=0.5154;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.90,-0.01 +2 241835379 rs12105122 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.75;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5120;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +2 241835421 rs13426919 A G 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.48;AMR_AF=0.30;AN=2;ASN_AF=0.24;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.42;LDAF=0.3676;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +2 241835432 rs10933514 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.77;AMR_AF=0.38;AN=2;ASN_AF=0.38;AVGPOST=0.9980;ERATE=0.0007;EUR_AF=0.52;LDAF=0.5162;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.06,-0.00 +2 242011151 rs6760731 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9946;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9968;RSQ=0.3116;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +2 242047718 rs55792951 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0150;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242062130 rs2302049 C G 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.05;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1334;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242065601 rs75080735 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.16;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1348;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242066314 rs2240542 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.64;AMR_AF=0.40;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3926;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242072280 rs11684830 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.33;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.2437;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242077496 rs1470414 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.14;AMR_AF=0.31;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2519;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242082222 rs2074834 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.1957;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242082262 rs6709462 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.46;AMR_AF=0.59;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5960;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242082480 rs758068 A C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.47;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3825;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242129487 rs11695874 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.09;AMR_AF=0.21;AN=2;ASN_AF=0.01;AVGPOST=0.9966;ERATE=0.0011;EUR_AF=0.31;LDAF=0.1667;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-1.79,-0.01,-5.00 +2 242139491 rs2013250 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.60;AMR_AF=0.62;AN=2;ASN_AF=0.13;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.80;LDAF=0.5489;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242140785 rs78154103 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1513;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242141719 rs2074840 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.42;AMR_AF=0.55;AN=2;ASN_AF=0.06;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4362;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242142737 rs1179530 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.1495;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.78,-0.01 +2 242149073 rs10192730 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.95;AMR_AF=0.84;AN=2;ASN_AF=0.47;AVGPOST=0.9913;ERATE=0.0046;EUR_AF=0.72;LDAF=0.7280;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242151585 rs7593101 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.24;AMR_AF=0.24;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1776;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242163359 rs7590653 G A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.19;AMR_AF=0.22;AN=2;ASN_AF=0.0017;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1590;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242176019 rs2305073 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.36;AMR_AF=0.23;AN=2;ASN_AF=0.22;AVGPOST=0.9968;ERATE=0.0230;EUR_AF=0.33;LDAF=0.2913;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242179134 rs10153800 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.27;LDAF=0.1609;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242189231 rs12475607 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0658;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242192848 rs7578199 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.0017;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1628;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242203916 rs11891776 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242206176 rs148887989 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242402061 rs13011791 T A 100 PASS AA=T;AC=2;AF=0.14;AFR_AF=0.12;AMR_AF=0.19;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1393;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.79,-0.08 +2 242407746 rs10933559 A G 100 PASS AA=A;AC=2;AF=0.16;AFR_AF=0.20;AMR_AF=0.19;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1554;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242432704 rs2271030 G C 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.24;AMR_AF=0.54;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3327;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242440221 rs13013693 G A 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.20;AMR_AF=0.19;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1567;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242572846 rs3208142 A G 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.42;AMR_AF=0.33;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0031;EUR_AF=0.31;LDAF=0.4041;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242573211 rs7424328 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.52;AMR_AF=0.55;AN=2;ASN_AF=0.87;AVGPOST=0.9813;ERATE=0.0687;EUR_AF=0.46;LDAF=0.5933;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242610773 rs7601000 T A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8617;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242617882 rs150300178 C T 100 PASS AA=C;AC=1;AF=0.0027;AFR_AF=0.01;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242674682 rs4675887 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.06;AVGPOST=0.9704;ERATE=0.0023;EUR_AF=0.0040;LDAF=0.0466;RSQ=0.7432;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:0.800:-0.48,-0.48,-0.48 +2 242674803 rs77940364 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=0.9842;ERATE=0.0008;EUR_AF=0.32;LDAF=0.2160;RSQ=0.9632;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-2.34,-0.00,-5.00 +2 242674959 rs62191977 T G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.94;AMR_AF=0.72;AN=2;ASN_AF=0.68;AVGPOST=0.9714;ERATE=0.0010;EUR_AF=0.64;LDAF=0.7283;RSQ=0.9461;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +2 242680430 rs4073889 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.83;AMR_AF=0.54;AN=2;ASN_AF=0.38;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5310;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +2 242682029 rs78147778 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.31;AMR_AF=0.18;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2221;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242684115 rs4234097 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.82;AMR_AF=0.54;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5261;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242690675 rs1106639 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.25;AMR_AF=0.19;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2112;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +2 242690745 rs1105273 C T 100 PASS AA=c;AC=1;AF=0.21;AFR_AF=0.27;AMR_AF=0.31;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2139;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242707101 rs6756901 A G 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.93;AMR_AF=0.51;AN=2;ASN_AF=0.59;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.50;LDAF=0.6194;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +2 242716380 rs12469459 A T 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.56;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9966;ERATE=0.0052;EUR_AF=0.30;LDAF=0.3777;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +2 242743357 rs78253117 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.05;AMR_AF=0.05;AN=2;AVGPOST=0.9902;ERATE=0.0007;EUR_AF=0.05;LDAF=0.0381;RSQ=0.9011;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.050:-2.98,-0.46,-0.18 +2 242757334 rs3749152 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.21;AMR_AF=0.12;AN=2;ASN_AF=0.22;AVGPOST=0.9941;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1481;RSQ=0.9828;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.04,-0.00,-5.00 +2 242757411 rs36111671 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.17;AN=2;ASN_AF=0.18;AVGPOST=0.9963;ERATE=0.0019;EUR_AF=0.23;LDAF=0.1870;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +2 242758179 rs2293764 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.28;AMR_AF=0.16;AN=2;ASN_AF=0.21;AVGPOST=0.9960;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1942;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-4.70 +2 242758203 rs2293763 T C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.46;AMR_AF=0.35;AN=2;ASN_AF=0.38;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3928;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +2 242758326 rs2293761 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.46;AMR_AF=0.36;AN=2;ASN_AF=0.39;AVGPOST=0.9951;ERATE=0.0007;EUR_AF=0.37;LDAF=0.3944;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.83,-0.07 +2 242793273 rs2227981 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.54;AMR_AF=0.62;AN=2;ASN_AF=0.72;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6199;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242794179 rs199998677 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +2 242814009 rs7420371 G A 100 PASS AA=.;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9782;ERATE=0.0005;EUR_AF=0.45;LDAF=0.2722;RSQ=0.9636;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.36 +2 242814228 rs202220121 C T 100 PASS AA=.;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9985;ERATE=0.0004;LDAF=0.0012;RSQ=0.4950;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.83 +1 876499 rs4372192 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.86;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=0.9928;ERATE=0.0004;EUR_AF=0.95;LDAF=0.9156;RSQ=0.9606;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.55,-0.01 +1 877831 rs6672356 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9900;ERATE=0.0007;EUR_AF=0.99;LDAF=0.9928;RSQ=0.4319;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +1 883625 rs4970378 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.03,-0.04 +1 887560 rs3748595 A C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.86;AVGPOST=0.9723;ERATE=0.0060;EUR_AF=0.85;LDAF=0.8349;RSQ=0.9220;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +1 887801 rs3828047 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9283;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 888639 rs3748596 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9282;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 888659 rs3748597 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9282;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 889158 rs56262069 G C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.79;AMR_AF=0.87;AN=2;ASN_AF=0.88;AVGPOST=0.9720;ERATE=0.0005;EUR_AF=0.85;LDAF=0.8465;RSQ=0.9181;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 894573 rs13303010 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.18;AMR_AF=0.71;AN=2;ASN_AF=0.69;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.90;LDAF=0.6524;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.09,-0.00 +1 897325 rs4970441 G C 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.71;AMR_AF=0.88;AN=2;ASN_AF=0.92;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8722;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 898323 rs6605071 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.91;AN=2;ASN_AF=0.92;AVGPOST=0.9922;ERATE=0.0031;EUR_AF=0.95;LDAF=0.9259;RSQ=0.9575;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.45,-0.00 +1 900505 rs28705211 G C 100 PASS AA=G;AC=2;AF=0.16;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.09;AVGPOST=0.9973;ERATE=0.0027;EUR_AF=0.28;LDAF=0.1656;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 906272 rs28507236 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.36;AVGPOST=0.9440;ERATE=0.0257;EUR_AF=0.09;LDAF=0.2085;RSQ=0.8702;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 909238 rs3829740 G C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.81;AMR_AF=0.67;AN=2;ASN_AF=0.89;AVGPOST=0.9925;ERATE=0.0083;EUR_AF=0.61;LDAF=0.7350;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 909309 rs3829738 T C 100 PASS AA=T;AC=2;AF=0.22;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=0.9943;ERATE=0.0048;EUR_AF=0.18;LDAF=0.2159;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 909314 rs138435605 C T 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0024;RSQ=0.9449;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +1 909768 rs2340593 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 935222 rs2298214 C A 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.05;AMR_AF=0.59;AN=2;ASN_AF=0.76;AVGPOST=0.9822;ERATE=0.0015;EUR_AF=0.59;LDAF=0.5106;RSQ=0.9758;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +1 948921 rs15842 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.67;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8981;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 949608 rs1921 G A 100 PASS AA=g;AC=2;AF=0.34;AFR_AF=0.43;AMR_AF=0.30;AN=2;ASN_AF=0.21;AVGPOST=0.9989;ERATE=0.0014;EUR_AF=0.40;LDAF=0.3404;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 949654 rs8997 A G 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.45;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9890;ERATE=0.0099;EUR_AF=0.94;LDAF=0.8154;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 977330 rs2799066 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.67;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8877;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +1 977570 rs2710876 G A 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.37;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.92;LDAF=0.8067;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.85,-0.01 +1 981087 rs3128098 A G 100 PASS AA=A;AC=2;AF=0.87;AFR_AF=0.60;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8739;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 981931 rs2465128 A G 100 PASS AA=a;AC=2;AF=0.82;AFR_AF=0.45;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=0.9895;ERATE=0.0052;EUR_AF=0.91;LDAF=0.8174;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 982941 rs3128102 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.41;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8166;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 982994 rs10267 T C 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.49;AMR_AF=0.91;AN=2;ASN_AF=0.99;AVGPOST=0.9919;ERATE=0.0036;EUR_AF=0.92;LDAF=0.8407;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 987200 rs9803031 C T 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.37;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8093;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 990380 rs3121561 C T 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.53;AMR_AF=0.29;AN=2;ASN_AF=0.20;AVGPOST=0.9904;ERATE=0.0022;EUR_AF=0.30;LDAF=0.3236;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +1 1021346 rs10907177 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.25;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9989;ERATE=0.0028;EUR_AF=0.16;LDAF=0.1694;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1021415 rs3737728 A G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.79;AMR_AF=0.78;AN=2;ASN_AF=0.91;AVGPOST=0.9968;ERATE=0.0026;EUR_AF=0.72;LDAF=0.7976;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1115994 rs13376597 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.42;AMR_AF=0.20;AN=2;ASN_AF=0.19;AVGPOST=0.9939;ERATE=0.0007;EUR_AF=0.14;LDAF=0.2297;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:0.950:-0.19,-0.45,-2.38 +1 1116231 rs13374146 T C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.38;AMR_AF=0.15;AN=2;ASN_AF=0.05;AVGPOST=0.9940;ERATE=0.0009;EUR_AF=0.08;LDAF=0.1529;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.79,-0.08 +1 1118212 rs10907171 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.81;AMR_AF=0.51;AN=2;ASN_AF=0.76;AVGPOST=0.9882;ERATE=0.0007;EUR_AF=0.26;LDAF=0.5538;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:1.950:-0.48,-0.48,-0.48 +1 1118275 rs61733845 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.38;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9981;ERATE=0.0008;EUR_AF=0.04;LDAF=0.1372;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.49 +1 1120307 rs7539911 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.12;AMR_AF=0.30;AN=2;ASN_AF=0.61;AVGPOST=0.9424;ERATE=0.0188;EUR_AF=0.19;LDAF=0.3081;RSQ=0.9022;SNPSOURCE=EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:0.800:-0.06,-0.87,-5.00 +1 1147422 rs17568 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.47;AMR_AF=0.48;AN=2;ASN_AF=0.76;AVGPOST=0.9874;ERATE=0.0026;EUR_AF=0.21;LDAF=0.4545;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.49,-0.00 +1 1158631 rs6603781 A G 100 PASS AA=N;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.87;LDAF=0.9415;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 1177893 rs12410680 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9936;ERATE=0.0006;EUR_AF=0.0040;LDAF=0.0200;RSQ=0.8774;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 0|1:1.150:-5.00,-0.74,-0.09 +1 1179479 rs201767574 G A 100 PASS AA=g;AC=1;AF=0.01;AMR_AF=0.0028;AN=2;ASN_AF=0.02;AVGPOST=0.9984;ERATE=0.0003;LDAF=0.0061;RSQ=0.8967;SNPSOURCE=EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1229114 rs2281459 C A 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.16;AMR_AF=0.09;AN=2;ASN_AF=0.58;AVGPOST=0.9672;ERATE=0.0019;EUR_AF=0.01;LDAF=0.2082;RSQ=0.9401;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.90,-0.46,-0.19 +1 1231507 rs619608 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.17;AMR_AF=0.12;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1184;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1233941 rs1739855 T C 100 PASS AA=c;AC=2;AF=0.46;AFR_AF=0.84;AMR_AF=0.27;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.09;LDAF=0.4562;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 1246004 rs2296474 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9606;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 1254841 rs10907179 C G 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.32;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7463;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1262591 rs2296472 C T 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.34;AMR_AF=0.83;AN=2;ASN_AF=0.83;AVGPOST=0.9963;ERATE=0.0017;EUR_AF=0.92;LDAF=0.7521;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1262966 rs307349 C T 100 PASS AA=c;AC=1;AF=0.78;AFR_AF=0.47;AMR_AF=0.85;AN=2;ASN_AF=0.83;AVGPOST=0.9949;ERATE=0.0017;EUR_AF=0.92;LDAF=0.7812;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1263144 rs307350 G A 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.77;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9638;ERATE=0.0131;EUR_AF=0.90;LDAF=0.8326;RSQ=0.9061;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1268159 rs3813210 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.31;AMR_AF=0.14;AN=2;ASN_AF=0.08;AVGPOST=0.9939;ERATE=0.0016;EUR_AF=0.04;LDAF=0.1283;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1268195 rs3813211 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.32;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9949;ERATE=0.0024;EUR_AF=0.02;LDAF=0.1222;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1268847 rs307378 T G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9593;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 1269004 rs140035477 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0192;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +1 1269554 rs307377 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.91;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9597;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.38,-0.02 +1 1271942 rs111315662 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.04;LDAF=0.1104;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1275716 rs112871502 T A 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.18;AMR_AF=0.11;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=0.02;LDAF=0.0859;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1277533 rs307362 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.99;AVGPOST=0.9829;ERATE=0.0056;EUR_AF=0.99;LDAF=0.9845;RSQ=0.5728;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +1 1277735 rs140992194 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0185;RSQ=0.9578;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.12 +1 1284490 rs150789461 G A 100 PASS AA=g;AC=1;AF=0.79;AFR_AF=0.50;AMR_AF=0.85;AN=2;ASN_AF=0.83;AVGPOST=0.9801;ERATE=0.0025;EUR_AF=0.92;LDAF=0.7871;RSQ=0.9580;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:0.950:-0.11,-0.66,-4.70 +1 1289911 rs4970365 G A 100 PASS AA=.;AC=1;AF=0.84;AFR_AF=0.71;AMR_AF=0.87;AN=2;ASN_AF=0.83;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8425;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1310074 rs2765035 C G 100 PASS AA=g;AC=2;AF=0.84;AFR_AF=0.59;AMR_AF=0.92;AN=2;ASN_AF=0.90;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.94;LDAF=0.8450;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.95,-0.05 +1 1330726 rs1240746 A G 100 PASS AA=N;AC=2;AF=0.60;AFR_AF=0.92;AMR_AF=0.47;AN=2;ASN_AF=0.98;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.18;LDAF=0.6036;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +1 1333598 rs35242196 C A 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.12;AMR_AF=0.27;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.3324;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1342612 rs2275915 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.23;AMR_AF=0.32;AN=2;ASN_AF=0.87;AVGPOST=0.9879;ERATE=0.0007;EUR_AF=0.16;LDAF=0.3870;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1387726 rs9793066 A G 100 PASS AA=.;AC=2;AF=0.27;AFR_AF=0.25;AMR_AF=0.35;AN=2;ASN_AF=0.39;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2706;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 1387764 rs9793256 G A 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2538;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1389886 rs112630825 G A 100 PASS AA=.;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9952;ERATE=0.0007;EUR_AF=0.02;LDAF=0.0346;RSQ=0.9499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-3.38,-0.49,-0.17 +1 1390875 rs1781147 C T 100 PASS AA=.;AC=2;AF=0.39;AFR_AF=0.58;AMR_AF=0.39;AN=2;ASN_AF=0.50;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.19;LDAF=0.3902;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +1 1391304 rs1695873 T C 100 PASS AA=.;AC=2;AF=0.34;AFR_AF=0.47;AMR_AF=0.35;AN=2;ASN_AF=0.46;AVGPOST=0.9749;ERATE=0.0177;EUR_AF=0.16;LDAF=0.3386;RSQ=0.9644;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.09,-0.04 +1 1403814 rs146537972 C T 100 PASS AA=.;AC=1;AF=0.08;AFR_AF=0.06;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0791;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.250:-5.00,-2.24,-0.00 +1 1417696 rs819970 C G 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.88;AMR_AF=0.75;AN=2;ASN_AF=0.96;AVGPOST=0.8291;ERATE=0.0120;EUR_AF=0.54;LDAF=0.7292;RSQ=0.7156;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:1.950:-2.96,-0.46,-0.18 +1 1418004 rs819972 T C 100 PASS AA=.;AC=2;AF=0.37;AFR_AF=0.66;AMR_AF=0.28;AN=2;ASN_AF=0.57;AVGPOST=0.9737;ERATE=0.0154;EUR_AF=0.09;LDAF=0.3727;RSQ=0.9683;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.52,-0.01 +1 1421531 rs819976 C A 100 PASS AA=.;AC=2;AF=0.44;AFR_AF=0.83;AMR_AF=0.31;AN=2;ASN_AF=0.64;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.10;LDAF=0.4396;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 1421991 rs860213 G A 100 PASS AA=.;AC=2;AF=0.40;AFR_AF=0.68;AMR_AF=0.30;AN=2;ASN_AF=0.63;AVGPOST=0.9892;ERATE=0.0006;EUR_AF=0.09;LDAF=0.3992;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +1 1423267 rs819977 A G 100 PASS AA=.;AC=2;AF=0.44;AFR_AF=0.82;AMR_AF=0.32;AN=2;ASN_AF=0.64;AVGPOST=0.9986;ERATE=0.0026;EUR_AF=0.11;LDAF=0.4404;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 1424695 rs144622790 G A 100 PASS AA=.;AC=1;AF=0.02;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0185;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.33 +1 1425700 rs819980 T C 100 PASS AA=.;AC=2;AF=0.44;AFR_AF=0.83;AMR_AF=0.32;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.11;LDAF=0.4425;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 1425816 rs149187984 G A 100 PASS AA=.;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0840;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1430985 rs139902189 C T 100 PASS AA=c;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.11;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0836;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1451380 rs9439458 T C 100 PASS AA=c;AC=2;AF=0.42;AFR_AF=0.82;AMR_AF=0.35;AN=2;ASN_AF=0.50;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.14;LDAF=0.4226;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +1 1469289 rs28370384 G C 100 PASS AA=-;AC=2;AF=0.41;AFR_AF=0.69;AMR_AF=0.32;AN=2;ASN_AF=0.51;AVGPOST=0.9523;ERATE=0.0129;EUR_AF=0.20;LDAF=0.4162;RSQ=0.9405;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +1 1479333 rs7533 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.89;AMR_AF=0.51;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.31;LDAF=0.6169;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1509825 rs6666293 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.90;AMR_AF=0.50;AN=2;ASN_AF=0.85;AVGPOST=0.9941;ERATE=0.0006;EUR_AF=0.33;LDAF=0.6217;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.04,-1.05 +1 1599812 rs12729295 C T 100 PASS AA=c;AC=2;AF=0.55;AFR_AF=0.47;AMR_AF=0.62;AN=2;ASN_AF=0.50;AVGPOST=0.9047;ERATE=0.0183;EUR_AF=0.62;LDAF=0.5381;RSQ=0.8475;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.11,-0.03 +1 1635565 rs11488591 C T 100 PASS AA=-;AC=1;AF=0.19;AFR_AF=0.44;AMR_AF=0.13;AN=2;ASN_AF=0.19;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.06;LDAF=0.1939;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 0|1:1.000:-2.24,-0.01,-2.02 +1 1635619 rs2076329 T C 100 PASS AA=-;AC=1;AF=0.62;AFR_AF=0.92;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=0.9908;ERATE=0.0007;EUR_AF=0.58;LDAF=0.6186;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +1 1647778 rs72901773 C G 100 PASS AA=-;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4990;RSQ=0.5884;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1647814 rs72901775 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4996;RSQ=0.6584;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1647871 rs72909014 T C 100 PASS AA=-;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9968;ERATE=0.0011;EUR_AF=0.50;LDAF=0.4981;RSQ=0.5883;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1647928 rs1883424 A G 100 PASS AA=-;AC=1;AF=0.27;AFR_AF=0.05;AMR_AF=0.33;AN=2;ASN_AF=0.38;AVGPOST=0.9877;ERATE=0.0017;EUR_AF=0.31;LDAF=0.2753;RSQ=0.9667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1650787 rs1137003 T C 100 PASS AA=-;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4999;RSQ=0.5716;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1650797 rs1059830 A G 100 PASS AA=-;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.50;LDAF=0.4994;RSQ=0.2299;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1650801 rs1137004 T C 100 PASS AA=-;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4997;RSQ=0.5007;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1650807 rs1137005 T C 100 PASS AA=-;AC=1;AF=0.46;AFR_AF=0.40;AMR_AF=0.48;AN=2;ASN_AF=0.47;AVGPOST=0.9962;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4654;RSQ=0.9605;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1650832 rs72909030 A G 100 PASS AA=-;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4998;RSQ=0.2749;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1650845 rs1059831 G A 100 PASS AA=-;AC=1;AF=0.46;AFR_AF=0.40;AMR_AF=0.48;AN=2;ASN_AF=0.47;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4650;RSQ=0.9745;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1650920 rs36191908 G A 100 PASS AA=-;AC=1;AF=0.38;AFR_AF=0.35;AMR_AF=0.44;AN=2;ASN_AF=0.32;AVGPOST=0.9752;ERATE=0.0417;EUR_AF=0.43;LDAF=0.3868;RSQ=0.9053;SNPSOURCE=EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1653004 rs36039898 T C 100 PASS AA=-;AC=1;AF=0.74;AFR_AF=0.47;AMR_AF=0.81;AN=2;ASN_AF=0.76;AVGPOST=0.9471;ERATE=0.0071;EUR_AF=0.85;LDAF=0.7308;RSQ=0.9170;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-1.87,-0.01,-4.70 +1 1653028 rs16825265 C T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.56;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.92;LDAF=0.7995;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-1.96,-0.00,-4.22 +1 1663851 rs2294486 G C 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.06;AMR_AF=0.47;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3261;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.40 +1 1663861 rs2294487 G A 100 PASS AA=g;AC=1;AF=0.33;AFR_AF=0.06;AMR_AF=0.47;AN=2;ASN_AF=0.32;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.44;LDAF=0.3261;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.21 +1 1684472 rs7407 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.07;AMR_AF=0.53;AN=2;ASN_AF=0.33;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3673;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1686943 rs2072929 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.28;AMR_AF=0.38;AN=2;ASN_AF=0.34;AVGPOST=0.9968;ERATE=0.0128;EUR_AF=0.47;LDAF=0.3784;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1686962 rs2076327 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.18;AMR_AF=0.41;AN=2;ASN_AF=0.32;AVGPOST=0.9925;ERATE=0.0047;EUR_AF=0.49;LDAF=0.3669;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1696659 rs75906779 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.47;AMR_AF=0.87;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7943;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1846765 rs2247560 G A 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.10;AMR_AF=0.51;AN=2;ASN_AF=0.49;AVGPOST=0.9869;ERATE=0.0171;EUR_AF=0.51;LDAF=0.4122;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1847856 rs2748986 G T 100 PASS AA=.;AC=2;AF=0.54;AFR_AF=0.44;AMR_AF=0.60;AN=2;ASN_AF=0.60;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.54;LDAF=0.5425;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.11,-0.47,-0.18 +1 1847979 rs28581776 T C 100 PASS AA=.;AC=1;AF=0.15;AFR_AF=0.36;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9965;ERATE=0.0044;EUR_AF=0.05;LDAF=0.1468;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1848160 rs28634421 A G 100 PASS AA=.;AC=1;AF=0.15;AFR_AF=0.37;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1500;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1849529 rs28640257 A G 100 PASS AA=.;AC=1;AF=0.39;AFR_AF=0.07;AMR_AF=0.51;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.3867;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1849530 rs4459050 T C 100 PASS AA=.;AC=1;AF=0.15;AFR_AF=0.37;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1485;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1849744 rs1884455 G A 100 PASS AA=.;AC=1;AF=0.15;AFR_AF=0.37;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.04;LDAF=0.1481;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 1987993 rs12184 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.89;AMR_AF=0.40;AN=2;ASN_AF=0.95;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.33;LDAF=0.6298;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 1988044 rs3820005 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1015;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 2121118 rs2503701 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.62;AMR_AF=0.64;AN=2;ASN_AF=0.88;AVGPOST=0.9819;ERATE=0.0151;EUR_AF=0.61;LDAF=0.6890;RSQ=0.9705;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +1 2125347 rs202236326 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 2288852 rs2645087 G A 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.04;AMR_AF=0.34;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1797;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 2332391 rs12037485 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.26;AMR_AF=0.45;AN=2;ASN_AF=0.21;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3505;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 2338126 rs3795269 C A 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.45;AN=2;ASN_AF=0.21;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3479;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 2340200 rs2494598 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.57;AMR_AF=0.75;AN=2;ASN_AF=0.76;AVGPOST=0.9988;ERATE=0.0026;EUR_AF=0.79;LDAF=0.7259;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 2441358 rs2494620 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.69;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3898;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.18 +1 2441392 rs2494619 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.69;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3898;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.45 +1 2444414 rs7535528 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.02;AMR_AF=0.32;AN=2;ASN_AF=0.35;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.38;LDAF=0.2798;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 2445406 rs2247308 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.69;AMR_AF=0.31;AN=2;ASN_AF=0.42;AVGPOST=0.9956;ERATE=0.0043;EUR_AF=0.20;LDAF=0.3862;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 2446960 rs2236394 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.70;AMR_AF=0.32;AN=2;ASN_AF=0.42;AVGPOST=0.9954;ERATE=0.0011;EUR_AF=0.20;LDAF=0.3878;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 2452357 rs2494636 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.69;AMR_AF=0.32;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3903;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 2452569 rs2985862 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.91;AMR_AF=0.80;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8437;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 2488153 rs4870 A G 100 PASS AA=a;AC=1;AF=0.55;AFR_AF=0.74;AMR_AF=0.53;AN=2;ASN_AF=0.48;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.47;LDAF=0.5453;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.00 +1 2938265 rs4576609 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.18;AMR_AF=0.23;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.16;LDAF=0.2454;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 2938697 rs3795262 T G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9927;ERATE=0.0032;EUR_AF=0.16;LDAF=0.2508;RSQ=0.9872;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3389727 rs2185639 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.38;AMR_AF=0.73;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.88;LDAF=0.6929;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3394456 rs4638054 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9726;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 3394640 rs4422946 A G 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.88;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8834;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3395039 rs10797395 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.38;AMR_AF=0.73;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.88;LDAF=0.6937;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3397062 rs56309807 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.04;AMR_AF=0.03;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0278;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3397188 rs2487677 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9919;RSQ=0.9601;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 3413514 rs61759245 C G 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.25;AMR_AF=0.06;AN=2;AVGPOST=0.9805;ERATE=0.0027;EUR_AF=0.03;LDAF=0.0816;RSQ=0.9057;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.40 +1 3421897 rs2821008 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.36;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9955;ERATE=0.0015;EUR_AF=0.17;LDAF=0.2296;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3424388 rs947345 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.07;AN=2;ASN_AF=0.05;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0726;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3428160 rs2820999 T G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.69;AMR_AF=0.43;AN=2;ASN_AF=0.61;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.27;LDAF=0.4785;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 3428608 rs11585362 G A 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.36;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2748;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 3440647 rs2794322 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.96;AMR_AF=0.95;AN=2;ASN_AF=0.92;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.97;LDAF=0.9507;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.76,-0.01 +1 3496479 rs2794340 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.88;AMR_AF=0.92;AN=2;ASN_AF=0.68;AVGPOST=0.9877;ERATE=0.0017;EUR_AF=0.91;LDAF=0.8421;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.75,-0.00 +1 3519179 rs2794330 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.41;AMR_AF=0.48;AN=2;ASN_AF=0.45;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.35;LDAF=0.4130;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +1 3544187 rs113982697 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0183;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3548136 rs2760321 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.84;AN=2;ASN_AF=0.99;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8859;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 3548832 rs2760320 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3607520 rs3765730 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.32;AVGPOST=0.9964;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2632;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +1 3607532 rs12122732 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.16;LDAF=0.0977;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.05,-0.96 +1 3638674 rs1801174 C T 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.79;AMR_AF=0.75;AN=2;ASN_AF=0.51;AVGPOST=0.9979;ERATE=0.0018;EUR_AF=0.91;LDAF=0.7508;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 3644349 rs2181486 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.76;AMR_AF=0.70;AN=2;ASN_AF=0.34;AVGPOST=0.9926;ERATE=0.0006;EUR_AF=0.82;LDAF=0.6585;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.00,-0.05 +1 3644374 rs2146657 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.75;AMR_AF=0.70;AN=2;ASN_AF=0.34;AVGPOST=0.9948;ERATE=0.0004;EUR_AF=0.83;LDAF=0.6606;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.41,-0.02 +1 3645844 rs2096224 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.42;AMR_AF=0.63;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.79;LDAF=0.5910;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 3669201 rs10797410 A G 100 PASS AA=a;AC=1;AF=0.47;AFR_AF=0.84;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4667;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3669205 rs10910021 C G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.41;AMR_AF=0.37;AN=2;ASN_AF=0.28;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3620;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3672156 rs4648555 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.0017;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.1628;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3673496 rs4648405 T G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.32;AMR_AF=0.32;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2816;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3677933 rs1181883 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.72;AMR_AF=0.45;AN=2;ASN_AF=0.26;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4558;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3679139 rs1181879 T C 100 PASS AA=t;AC=1;AF=0.49;AFR_AF=0.83;AMR_AF=0.47;AN=2;ASN_AF=0.26;AVGPOST=0.9945;ERATE=0.0004;EUR_AF=0.45;LDAF=0.4890;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-0.13,-0.59,-3.92 +1 3679146 rs4648556 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.25;AN=2;ASN_AF=0.0017;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1784;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-0.09,-0.71,-5.00 +1 3679307 rs4648557 T C 100 PASS AA=t;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.25;AN=2;ASN_AF=0.0017;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.30;LDAF=0.1788;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-2.97,-0.46,-0.18 +1 3679775 rs10910024 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.10;AMR_AF=0.24;AN=2;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.25;LDAF=0.1481;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0158;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3732103 rs4648409 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.89;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.54;LDAF=0.6125;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3743319 rs6663840 G A 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.52;AMR_AF=0.33;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4310;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3745787 rs2275832 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.91;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6650;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3745924 rs2275831 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1976;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3746583 rs2275828 G T 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3757;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3746589 rs2275826 C G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8026;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3747580 rs6424058 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.24;AMR_AF=0.46;AN=2;ASN_AF=0.35;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.43;LDAF=0.3681;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3747603 rs6413779 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8025;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3753136 rs2275824 A T 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.09;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3350;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3755675 rs1891941 T C 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.91;AMR_AF=0.85;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8026;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3761479 rs2275822 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.26;AMR_AF=0.46;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3743;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3775454 rs4376673 C G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.98;AMR_AF=0.85;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8243;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3782608 rs10909809 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.33;AVGPOST=0.9893;ERATE=0.0008;EUR_AF=0.65;LDAF=0.4694;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3786189 rs1141070 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.15;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2336;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 3800242 rs3205087 A G 100 PASS AA=A;AC=2;AF=0.37;AFR_AF=0.33;AMR_AF=0.37;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3685;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 3806643 rs4520357 T A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.52;AMR_AF=0.36;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4004;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 3807593 rs4274008 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 3809423 rs11807227 G A 100 PASS AA=g;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.15;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1554;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 4772053 rs1061968 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.45;AMR_AF=0.48;AN=2;ASN_AF=0.62;AVGPOST=0.9678;ERATE=0.0131;EUR_AF=0.38;LDAF=0.4728;RSQ=0.9532;SNPSOURCE=LOWCOV,EXOME;THETA=0.0102;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 5925371 rs1287634 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.41;AN=2;ASN_AF=0.27;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3199;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.93,-0.05 +1 5926507 rs555164 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.17;AMR_AF=0.41;AN=2;ASN_AF=0.28;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.41;LDAF=0.3230;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.55 +1 5934490 rs868163 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.68;AMR_AF=0.59;AN=2;ASN_AF=0.30;AVGPOST=0.9930;ERATE=0.0032;EUR_AF=0.61;LDAF=0.5421;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0086;VT=SNP GT:DS:GL 1|0:1.000:-1.77,-0.01,-5.00 +1 5935162 rs1287637 A T 100 PASS AA=t;AC=2;AF=0.83;AFR_AF=0.88;AMR_AF=0.81;AN=2;ASN_AF=0.83;AVGPOST=0.9828;ERATE=0.0079;EUR_AF=0.81;LDAF=0.8314;RSQ=0.9512;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.46,-0.00 +1 5937168 rs3747992 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.30;AMR_AF=0.40;AN=2;ASN_AF=0.74;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4791;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.29,-0.32 +1 5937391 rs3747989 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.95;AMR_AF=0.72;AN=2;ASN_AF=0.82;AVGPOST=0.9990;ERATE=0.0012;EUR_AF=0.81;LDAF=0.8288;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.76,-0.00 +1 5940243 rs17472401 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0119;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6142308 rs11542387 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.23;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0914;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6154417 rs2294932 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.36;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2467;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 6157434 rs2311802 C T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.71;AMR_AF=0.54;AN=2;ASN_AF=0.18;AVGPOST=0.9962;ERATE=0.0013;EUR_AF=0.49;LDAF=0.4628;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.28,-0.01,-1.75 +1 6158562 rs2229002 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.63;AMR_AF=0.62;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5561;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 6184092 rs2843493 A G 100 PASS AA=g;AC=2;AF=0.70;AFR_AF=0.61;AMR_AF=0.61;AN=2;ASN_AF=0.99;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7020;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6184192 rs2273041 A G 100 PASS AA=g;AC=2;AF=0.60;AFR_AF=0.60;AMR_AF=0.51;AN=2;ASN_AF=0.84;AVGPOST=0.9993;ERATE=0.0009;EUR_AF=0.45;LDAF=0.5949;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6188546 rs2273034 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.10;AMR_AF=0.31;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2195;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.79 +1 6190215 rs9434662 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.66;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.17;LDAF=0.2929;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6194347 rs3765452 T G 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.31;AMR_AF=0.19;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0015;EUR_AF=0.17;LDAF=0.3323;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6195493 rs2250504 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.33;AMR_AF=0.46;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4987;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6196869 rs2250358 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.36;AMR_AF=0.47;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5070;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6196943 rs2746066 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.36;AMR_AF=0.47;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5064;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6196951 rs2785582 T A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.36;AMR_AF=0.47;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 6202245 rs2273032 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.07;AN=2;ASN_AF=0.36;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.11;LDAF=0.1550;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6204222 rs17489787 C G 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=0.9987;ERATE=0.0021;EUR_AF=0.11;LDAF=0.1327;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 6209363 rs12565328 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.74;AMR_AF=0.23;AN=2;ASN_AF=0.67;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4864;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6211183 rs9434711 G A 100 PASS AA=g;AC=1;AF=0.48;AFR_AF=0.71;AMR_AF=0.23;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4767;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6228180 rs58385986 A C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=0.9980;ERATE=0.0008;EUR_AF=0.04;LDAF=0.1060;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 6252946 rs74804565 G A 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.30;AMR_AF=0.17;AN=2;ASN_AF=0.15;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1509;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 6257826 rs2294714 T C 100 PASS AA=T;AC=2;AF=0.38;AFR_AF=0.45;AMR_AF=0.34;AN=2;ASN_AF=0.47;AVGPOST=0.9981;ERATE=0.0054;EUR_AF=0.28;LDAF=0.3748;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6257856 rs2294713 G A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.73;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=0.9987;ERATE=0.0065;EUR_AF=0.45;LDAF=0.5764;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0129;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.65,-0.00 +1 6278414 rs709209 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.70;AMR_AF=0.32;AN=2;ASN_AF=0.27;AVGPOST=0.9974;ERATE=0.0004;EUR_AF=0.33;LDAF=0.3953;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6279370 rs846111 G C 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.18;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1741;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 6305303 rs61760837 C A 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.30;AMR_AF=0.70;AN=2;ASN_AF=0.54;AVGPOST=0.9765;ERATE=0.0008;EUR_AF=0.68;LDAF=0.5635;RSQ=0.9667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-3.14,-0.48,-0.18 +1 6313938 rs12735670 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.69;AMR_AF=0.77;AN=2;ASN_AF=0.59;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6879;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.74,-0.00 +1 6314822 rs11590458 T C 100 PASS AA=t;AC=2;AF=0.71;AFR_AF=0.79;AMR_AF=0.77;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0013;EUR_AF=0.72;LDAF=0.7116;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6579607 rs1556035 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.45;AMR_AF=0.86;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.89;LDAF=0.7659;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6586070 rs7548042 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9813;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6614415 rs6693400 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9955;ERATE=0.0009;EUR_AF=1.00;LDAF=0.9783;RSQ=0.9171;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +1 6614535 rs4908923 G A 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.44;AMR_AF=0.84;AN=2;ASN_AF=0.81;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.87;LDAF=0.7504;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.70,-0.10 +1 6631319 rs11122096 G A 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=0.96;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9080;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6635231 rs10864628 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9397;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6636461 rs17492553 C T 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.25;AMR_AF=0.47;AN=2;ASN_AF=0.36;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4156;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6679848 rs2072948 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.10;AMR_AF=0.29;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2368;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 6681744 rs3747994 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.64;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6586;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 6695802 rs6577583 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.64;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6652;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 6704635 rs200458 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.84;AMR_AF=0.95;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.92;LDAF=0.8199;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 6705874 rs200454 G C 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.0035;AVGPOST=0.9984;ERATE=0.0038;EUR_AF=0.23;LDAF=0.1859;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 7527996 rs1201529 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.65;AMR_AF=0.45;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.57;LDAF=0.4900;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 7737799 rs3011926 A G 100 PASS AA=a;AC=2;AF=0.59;AFR_AF=0.60;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5876;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0117;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 7796641 rs2071985 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.52;AMR_AF=0.63;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.48;LDAF=0.5363;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 7845695 rs228729 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.77;AMR_AF=0.73;AN=2;ASN_AF=0.74;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7169;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 7869915 rs228668 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.97;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9694;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.52,-0.00 +1 7870048 rs228669 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.96;AMR_AF=0.80;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8633;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 7887248 rs2859387 G A 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.50;AMR_AF=0.47;AN=2;ASN_AF=0.78;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.37;LDAF=0.5228;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 7887493 rs228696 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.97;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9694;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 7889941 rs2640908 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.30;AMR_AF=0.18;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2893;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 7890264 rs1773135 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7086;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 7907971 rs707473 C A 100 PASS AA=C;AC=2;AF=0.26;AFR_AF=0.29;AMR_AF=0.18;AN=2;ASN_AF=0.42;AVGPOST=0.9939;ERATE=0.0122;EUR_AF=0.17;LDAF=0.2635;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-2.61,-0.00 +1 7913430 rs228648 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.43;AMR_AF=0.46;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4597;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 8029494 rs2641116 T G 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.32;AMR_AF=0.37;AN=2;ASN_AF=0.69;AVGPOST=0.9936;ERATE=0.0093;EUR_AF=0.18;LDAF=0.3755;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0094;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 8031054 rs389298 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.2062;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 8390384 rs56125713 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.13;AN=2;ASN_AF=0.04;AVGPOST=0.9980;ERATE=0.0036;EUR_AF=0.16;LDAF=0.1002;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 8390495 rs1058619 A G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.74;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9826;ERATE=0.0096;EUR_AF=0.74;LDAF=0.7641;RSQ=0.9637;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +1 8395560 rs7535752 G T 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.20;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1101;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 8418644 rs11121172 C A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7774;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 8418650 rs1058766 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.83;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7783;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 8421092 rs2784735 C T 100 PASS AA=c;AC=2;AF=0.51;AFR_AF=0.22;AMR_AF=0.49;AN=2;ASN_AF=0.85;AVGPOST=0.9663;ERATE=0.0039;EUR_AF=0.46;LDAF=0.5076;RSQ=0.9590;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.93,-0.05 +1 8421203 rs13596 T C 100 PASS AA=t;AC=2;AF=0.78;AFR_AF=0.80;AMR_AF=0.80;AN=2;ASN_AF=0.92;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.67;LDAF=0.7828;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +1 8928125 rs2071412 G T 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.14;AMR_AF=0.40;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.25;LDAF=0.3822;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 9009406 rs2274327 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.10;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2927;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 9009444 rs2274328 A C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.54;AMR_AF=0.50;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4938;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 9017204 rs2274333 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.35;AN=2;ASN_AF=0.54;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3234;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 9030964 rs3737665 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2742;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 9063602 rs4908804 G C 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.32;AMR_AF=0.53;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5033;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 9070178 rs67090552 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.28;AMR_AF=0.13;AN=2;ASN_AF=0.25;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.06;LDAF=0.1718;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-2.28,-0.01,-1.70 +1 9074932 rs1556757 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.51;AMR_AF=0.53;AN=2;ASN_AF=0.55;AVGPOST=0.9971;ERATE=0.0004;EUR_AF=0.35;LDAF=0.4677;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.18 +1 9165685 rs72637739 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1699;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 9307033 rs7524046 G A 100 PASS AA=g;AC=2;AF=0.25;AFR_AF=0.11;AMR_AF=0.21;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.24;LDAF=0.2532;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 9307138 rs11121350 T C 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.27;AMR_AF=0.23;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2999;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 9416346 rs3795309 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=0.9900;ERATE=0.0055;EUR_AF=0.33;LDAF=0.2370;RSQ=0.9810;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 9642329 rs56026893 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.18;LDAF=0.1796;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 9658465 rs9430181 T G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.73;AMR_AF=0.89;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7846;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 9658707 rs9430182 G A 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.71;AMR_AF=0.78;AN=2;ASN_AF=0.71;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.80;LDAF=0.7550;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 9781304 rs151278626 G C 100 PASS AA=G;AC=1;AF=0.0032;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0030;RSQ=0.9110;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 9781643 rs140468930 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0169;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +1 10195185 rs138056371 A G 100 PASS AA=A;AC=1;AF=0.0037;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0037;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 10318652 rs12402052 C G 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2601;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10322054 rs4846209 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.35;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3656;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10327407 rs12141246 A T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.45;AMR_AF=0.42;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.36;LDAF=0.3954;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10328338 rs1339458 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.15;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2794;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10342629 rs3748576 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.97;AMR_AF=0.73;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.64;LDAF=0.6983;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 10355834 rs3753037 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.18;AMR_AF=0.36;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2875;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10394536 rs2276100 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.40;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3556;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10420937 rs3748579 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3565;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10431158 rs17411502 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.32;LDAF=0.2779;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10435324 rs11121552 C A 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2600;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10459779 rs3737155 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3574;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10460485 rs1049887 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2636;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10473196 rs2229687 C T 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3583;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10479635 rs2298570 C G 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.76;AMR_AF=0.53;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5169;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10479678 rs1889309 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.16;AMR_AF=0.35;AN=2;ASN_AF=0.30;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2798;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 10511544 rs628462 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.03;AMR_AF=0.34;AN=2;ASN_AF=0.51;AVGPOST=0.9930;ERATE=0.0060;EUR_AF=0.39;LDAF=0.3357;RSQ=0.9900;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 10511589 rs666103 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.86;AMR_AF=0.86;AN=2;ASN_AF=0.82;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.93;LDAF=0.8750;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 10529194 rs2781233 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4094;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 10596388 rs2480779 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 10713765 rs284294 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.72;AMR_AF=0.50;AN=2;ASN_AF=0.28;AVGPOST=0.9914;ERATE=0.0021;EUR_AF=0.56;LDAF=0.5118;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 10719905 rs184530993 T A 100 PASS AA=t;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9986;ERATE=0.0004;LDAF=0.0025;RSQ=0.7813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11087524 rs1782455 G A 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.25;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.84;LDAF=0.7075;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11090916 rs12711521 C A 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.15;AMR_AF=0.75;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.6257;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11097867 rs12142107 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.26;AMR_AF=0.07;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1006;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11114940 rs13616 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.23;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1188;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11119899 rs7545802 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9945;ERATE=0.0011;EUR_AF=1.00;LDAF=0.9965;RSQ=0.2898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.79,-0.00 +1 11126848 rs41274502 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.06;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0768;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11128654 rs2791655 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.23;AMR_AF=0.73;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.73;LDAF=0.6366;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0073;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11132217 rs1130683 G A 100 PASS AA=A;AC=1;AF=0.65;AFR_AF=0.23;AMR_AF=0.75;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6463;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11137661 rs2273339 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0878;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11139731 rs144662222 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.12;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0810;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11141102 rs2273337 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.15;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0878;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11141187 rs2258621 C G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.48;AMR_AF=0.79;AN=2;ASN_AF=0.87;AVGPOST=0.9803;ERATE=0.0255;EUR_AF=0.71;LDAF=0.7136;RSQ=0.9653;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11150682 rs3737621 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0832;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11159823 rs12133922 T C 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0832;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11169676 rs2275525 C T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.23;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1107;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11174331 rs17235654 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.14;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0727;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11181457 rs17235633 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0690;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11186897 rs3737611 A G 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1152;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11187893 rs1770344 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9955;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11205058 rs1057079 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.08;AMR_AF=0.70;AN=2;ASN_AF=0.82;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6073;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11206690 rs2275942 A T 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0690;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11253844 rs12122575 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0690;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11255008 rs2076658 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0690;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11273418 rs12116957 T G 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.17;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0782;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11288758 rs1064261 G A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.33;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7025;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11301714 rs1135172 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.23;AMR_AF=0.75;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6614;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11303153 rs12141961 C A 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0690;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11579470 rs2072994 G A 100 PASS AA=g;AC=2;AF=0.43;AFR_AF=0.06;AMR_AF=0.67;AN=2;ASN_AF=0.28;AVGPOST=0.9972;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4289;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11708736 rs1055547 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.32;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9967;ERATE=0.0020;EUR_AF=0.78;LDAF=0.5470;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11710561 rs9614 T G 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.23;AN=2;ASN_AF=0.44;AVGPOST=0.9669;ERATE=0.0033;EUR_AF=0.17;LDAF=0.2516;RSQ=0.9326;SNPSOURCE=LOWCOV,EXOME;THETA=0.0101;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11714368 rs2272983 T G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.83;AMR_AF=0.85;AN=2;ASN_AF=0.74;AVGPOST=0.9646;ERATE=0.0017;EUR_AF=0.79;LDAF=0.7932;RSQ=0.9158;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.70,-0.10 +1 11728894 rs3125818 G A 100 PASS AA=G;AC=2;AF=0.11;AFR_AF=0.06;AMR_AF=0.17;AN=2;ASN_AF=0.13;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.11;LDAF=0.1147;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11735262 rs2233027 C T 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.04;AMR_AF=0.20;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1436;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +1 11737051 rs2294638 G C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.90;AMR_AF=0.58;AN=2;ASN_AF=0.38;AVGPOST=0.9981;ERATE=0.0008;EUR_AF=0.49;LDAF=0.5694;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +1 11772526 rs1883573 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.61;AMR_AF=0.54;AN=2;ASN_AF=0.54;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.44;LDAF=0.5206;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11779762 rs12117076 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.02;AVGPOST=0.9969;ERATE=0.0005;EUR_AF=0.34;LDAF=0.1866;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11808706 rs11121819 T G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.39;AMR_AF=0.44;AN=2;ASN_AF=0.61;AVGPOST=0.9954;ERATE=0.0014;EUR_AF=0.33;LDAF=0.4369;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11851003 rs3818762 G C 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.30;LDAF=0.2203;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11852300 rs1476413 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.17;AN=2;ASN_AF=0.21;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2196;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11854457 rs4846051 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.69;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9258;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11854476 rs1801131 T G 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.18;AN=2;ASN_AF=0.19;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.32;LDAF=0.2295;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11854755 rs1994798 G A 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.46;AMR_AF=0.72;AN=2;ASN_AF=0.80;AVGPOST=0.9995;ERATE=0.0065;EUR_AF=0.60;LDAF=0.6395;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11856378 rs1801133 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.49;AN=2;ASN_AF=0.37;AVGPOST=0.9987;ERATE=0.0008;EUR_AF=0.35;LDAF=0.3245;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 11884555 rs198400 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 11896141 rs41275498 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0142;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 11897592 rs198406 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.46;AMR_AF=0.27;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3367;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 12062205 rs2236057 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.65;AMR_AF=0.57;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.68;LDAF=0.6416;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 12082926 rs2295283 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.79;AMR_AF=0.59;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6591;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 12164437 rs2230622 C T 100 PASS AA=.;AC=1;AF=0.28;AFR_AF=0.24;AMR_AF=0.36;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0024;EUR_AF=0.22;LDAF=0.2764;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 12175729 rs1763642 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12175818 rs77569300 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.60;AMR_AF=0.36;AN=2;ASN_AF=0.41;AVGPOST=0.9954;ERATE=0.0008;EUR_AF=0.20;LDAF=0.3712;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 12339619 rs4845898 A T 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1712;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 12401868 rs28551666 A C 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.73;AMR_AF=0.76;AN=2;ASN_AF=0.90;AVGPOST=0.9963;ERATE=0.0239;EUR_AF=0.78;LDAF=0.7971;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12418700 rs10864552 T C 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.91;LDAF=0.9605;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12638964 rs2275875 T C 100 PASS AA=t;AC=1;AF=0.78;AFR_AF=0.76;AMR_AF=0.76;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7829;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 12639018 rs2275874 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.37;AVGPOST=0.9964;ERATE=0.0008;EUR_AF=0.50;LDAF=0.3796;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 12776344 rs3000859 A T 100 PASS AA=a;AC=2;AF=0.68;AFR_AF=0.41;AMR_AF=0.85;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.82;LDAF=0.6814;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12779560 rs3010876 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.92;AMR_AF=0.87;AN=2;ASN_AF=0.81;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8527;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12779618 rs3010877 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.92;AMR_AF=0.87;AN=2;ASN_AF=0.81;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.83;LDAF=0.8518;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12785494 rs7513079 G T 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.48;AMR_AF=0.75;AN=2;ASN_AF=0.80;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7007;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12820870 rs1132185 T C 100 PASS AA=.;AC=2;AF=0.83;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.80;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8300;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12835868 rs1812242 T C 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.58;AMR_AF=0.81;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7381;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12837634 rs848578 T A 100 PASS AA=.;AC=2;AF=0.70;AFR_AF=0.40;AMR_AF=0.80;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.82;LDAF=0.6992;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 12853403 rs1737157 A C 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.36;AN=2;ASN_AF=0.50;AVGPOST=0.9499;ERATE=0.0372;EUR_AF=0.33;LDAF=0.3563;RSQ=0.9251;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-2.23,-0.00,-5.00 +1 12854428 rs1769774 C T 100 PASS AA=.;AC=1;AF=0.29;AFR_AF=0.18;AMR_AF=0.28;AN=2;ASN_AF=0.38;AVGPOST=0.9820;ERATE=0.0081;EUR_AF=0.29;LDAF=0.2843;RSQ=0.9568;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.72,-0.09,-5.00 +1 12854530 rs1063776 C G 100 PASS AA=.;AC=2;AF=0.87;AFR_AF=0.92;AMR_AF=0.89;AN=2;ASN_AF=0.80;AVGPOST=0.9948;ERATE=0.0009;EUR_AF=0.87;LDAF=0.8686;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.12,-0.03 +1 12854544 rs1063778 T C 100 PASS AA=.;AC=1;AF=0.35;AFR_AF=0.21;AMR_AF=0.31;AN=2;ASN_AF=0.49;AVGPOST=0.9819;ERATE=0.0037;EUR_AF=0.35;LDAF=0.3467;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-2.91,-0.00,-5.00 +1 12856146 rs1974302 G A 100 PASS AA=.;AC=1;AF=0.32;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.44;AVGPOST=0.9637;ERATE=0.0009;EUR_AF=0.32;LDAF=0.3137;RSQ=0.9354;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-3.30 +1 12955697 rs200630847 A G 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.15;AVGPOST=0.8264;ERATE=0.0041;EUR_AF=0.16;LDAF=0.1870;RSQ=0.5499;SNPSOURCE=EXOME;THETA=0.0175;VT=SNP GT:DS:GL 1|0:0.850:-0.48,-0.48,-0.48 +1 12979729 rs146836223 G A 100 PASS AA=.;AC=1;AF=0.18;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.13;AVGPOST=0.9162;ERATE=0.0021;EUR_AF=0.24;LDAF=0.1914;RSQ=0.7634;SNPSOURCE=EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|0:0.950:-0.11,-0.65,-4.22 +1 12980116 rs77689488 G A 100 PASS AA=.;AC=1;AF=0.04;AMR_AF=0.01;AN=2;ASN_AF=0.12;AVGPOST=0.9770;ERATE=0.0014;EUR_AF=0.02;LDAF=0.0497;RSQ=0.8335;SNPSOURCE=LOWCOV,EXOME;THETA=0.0193;VT=SNP GT:DS:GL 0|1:1.000:-2.39,-0.01,-1.59 +1 12980122 rs148616830 G C 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.11;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9191;ERATE=0.0041;EUR_AF=0.14;LDAF=0.1395;RSQ=0.7645;SNPSOURCE=EXOME;THETA=0.0084;VT=SNP GT:DS:GL 1|0:1.000:-2.25,-0.01,-1.75 +1 12980127 rs142075338 C T 100 PASS AA=.;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9208;ERATE=0.0066;EUR_AF=0.14;LDAF=0.1377;RSQ=0.7600;SNPSOURCE=LOWCOV,EXOME;THETA=0.0206;VT=SNP GT:DS:GL 1|0:1.000:-1.96,-0.00,-3.44 +1 12980232 rs201674075 G A 100 PASS AA=.;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.8105;ERATE=0.0180;EUR_AF=0.29;LDAF=0.2698;RSQ=0.5362;SNPSOURCE=EXOME;THETA=0.0071;VT=SNP GT:DS:GL 1|0:1.050:-1.62,-0.04,-1.22 +1 13037823 rs202065754 A G 100 PASS AA=.;AC=1;AF=0.81;AFR_AF=0.76;AMR_AF=0.82;AN=2;ASN_AF=0.84;AVGPOST=0.6746;ERATE=0.0032;EUR_AF=0.81;LDAF=0.6880;RSQ=0.2588;SNPSOURCE=EXOME;THETA=0.0093;VT=SNP GT:DS:GL 0|1:1.300:-0.48,-0.48,-0.48 +1 13037860 rs201365789 A G 100 PASS AA=.;AC=1;AF=0.75;AFR_AF=0.70;AMR_AF=0.76;AN=2;ASN_AF=0.78;AVGPOST=0.6569;ERATE=0.0048;EUR_AF=0.75;LDAF=0.6422;RSQ=0.2622;SNPSOURCE=EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:1.350:-0.48,-0.48,-0.48 +1 13037864 rs200307391 T A 100 PASS AA=.;AC=1;AF=0.78;AFR_AF=0.74;AMR_AF=0.78;AN=2;ASN_AF=0.83;AVGPOST=0.6669;ERATE=0.0057;EUR_AF=0.76;LDAF=0.6690;RSQ=0.2622;SNPSOURCE=EXOME;THETA=0.0090;VT=SNP GT:DS:GL 0|1:1.200:-0.48,-0.48,-0.48 +1 13038327 rs199598633 G T 100 PASS AA=.;AC=1;AF=0.56;AFR_AF=0.50;AMR_AF=0.57;AN=2;ASN_AF=0.60;AVGPOST=0.7473;ERATE=0.0244;EUR_AF=0.57;LDAF=0.5487;RSQ=0.4189;SNPSOURCE=EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:0.800:-0.19,-0.45,-2.20 +1 13910417 rs355025 C T 100 PASS AA=c;AC=2;AF=0.53;AFR_AF=0.70;AMR_AF=0.48;AN=2;ASN_AF=0.67;AVGPOST=0.9977;ERATE=0.0004;EUR_AF=0.35;LDAF=0.5332;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 13940864 rs2486188 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9726;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 14143003 rs1046331 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.92;AMR_AF=0.89;AN=2;ASN_AF=0.70;AVGPOST=0.9986;ERATE=0.0014;EUR_AF=0.85;LDAF=0.8340;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 14149622 rs2697968 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.75;AMR_AF=0.79;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.80;LDAF=0.7431;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 15386628 rs2073091 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.58;AVGPOST=0.9885;ERATE=0.0020;EUR_AF=0.16;LDAF=0.2665;RSQ=0.9827;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 15390145 rs2076565 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.66;AMR_AF=0.28;AN=2;ASN_AF=0.68;AVGPOST=0.9993;ERATE=0.0029;EUR_AF=0.23;LDAF=0.4534;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 15541537 rs3753314 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.71;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8711;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 15541607 rs3820065 T C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.17;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1884;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15546077 rs3753313 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.1915;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 15808767 rs3820071 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3386;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15808872 rs3766160 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.24;AMR_AF=0.23;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3204;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15809876 rs10927792 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.29;AMR_AF=0.31;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3495;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15809930 rs184117904 G A 100 PASS AA=g;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0024;RSQ=0.9432;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15812432 rs6429745 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 15813751 rs2011159 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 15813969 rs3737704 A C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.88;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=0.9993;ERATE=0.0016;EUR_AF=0.56;LDAF=0.6630;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15832543 rs1052576 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5987;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15844615 rs1820204 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5983;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15844926 rs1820205 C T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5983;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15850613 rs1052571 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.71;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9668;ERATE=0.0058;EUR_AF=0.53;LDAF=0.5818;RSQ=0.9509;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.050:-0.48,-0.48,-0.48 +1 15873386 rs7515244 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3625;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15874961 rs2295626 T A 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.28;AMR_AF=0.26;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.3624;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15909850 rs6429757 C G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.87;AMR_AF=0.53;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6321;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15909895 rs6429758 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.80;AMR_AF=0.53;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6165;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 15911349 rs3737705 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.26;AMR_AF=0.26;AN=2;ASN_AF=0.54;AVGPOST=0.9959;ERATE=0.0007;EUR_AF=0.32;LDAF=0.3523;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|0:0.950:-0.19,-0.46,-2.48 +1 15959886 rs3795762 C G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.89;AMR_AF=0.57;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.61;LDAF=0.6628;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16096893 rs12146078 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.09;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1394;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16096934 rs10927851 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.39;AMR_AF=0.61;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6243;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16332665 rs34950166 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0084;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16342237 rs1739840 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.71;AMR_AF=0.49;AN=2;ASN_AF=0.75;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6416;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16344360 rs732286 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.71;AMR_AF=0.48;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6389;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16344402 rs945416 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.71;AMR_AF=0.48;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6394;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16344494 rs1572381 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.71;AMR_AF=0.48;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6388;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.86,-0.00 +1 16351275 rs10927887 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.71;AMR_AF=0.48;AN=2;ASN_AF=0.75;AVGPOST=0.9956;ERATE=0.0011;EUR_AF=0.55;LDAF=0.6242;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16354280 rs10927889 G C 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.64;AMR_AF=0.56;AN=2;ASN_AF=0.90;AVGPOST=0.9929;ERATE=0.0007;EUR_AF=0.59;LDAF=0.6794;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +1 16356501 rs1805152 G A 100 PASS AA=g;AC=2;AF=0.63;AFR_AF=0.74;AMR_AF=0.48;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6328;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16356583 rs3737218 C T 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.31;AMR_AF=0.33;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.40;LDAF=0.4407;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 16358685 rs6669935 C G 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.65;AMR_AF=0.56;AN=2;ASN_AF=0.97;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6997;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16358932 rs10803407 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.77;AMR_AF=0.61;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7623;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16359051 rs10927892 C A 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.68;AMR_AF=0.44;AN=2;ASN_AF=0.69;AVGPOST=0.9598;ERATE=0.0039;EUR_AF=0.49;LDAF=0.5742;RSQ=0.9469;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16359052 rs10927893 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.71;AMR_AF=0.83;AN=2;ASN_AF=0.81;AVGPOST=0.9315;ERATE=0.0611;EUR_AF=0.77;LDAF=0.7733;RSQ=0.8491;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16371067 rs2015352 G T 100 PASS AA=g;AC=2;AF=0.60;AFR_AF=0.29;AMR_AF=0.70;AN=2;ASN_AF=0.71;AVGPOST=0.9986;ERATE=0.0017;EUR_AF=0.67;LDAF=0.5970;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.30,-0.00 +1 16372003 rs6604910 G C 100 PASS AA=g;AC=2;AF=0.60;AFR_AF=0.27;AMR_AF=0.69;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6020;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16373124 rs5257 A G 100 PASS AA=a;AC=2;AF=0.78;AFR_AF=0.39;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7779;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16374533 rs2014562 G C 100 PASS AA=N;AC=2;AF=0.91;AFR_AF=0.76;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9145;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16374994 rs1889788 C T 100 PASS AA=c;AC=2;AF=0.78;AFR_AF=0.39;AMR_AF=0.83;AN=2;ASN_AF=0.99;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=0.84;LDAF=0.7767;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.02,-0.47,-0.18 +1 16375063 rs1889789 C G 100 PASS AA=g;AC=2;AF=0.72;AFR_AF=0.44;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=0.9233;ERATE=0.0215;EUR_AF=0.76;LDAF=0.7066;RSQ=0.8852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:1.400:-5.00,-0.32,-0.28 +1 16376191 rs7367494 C T 100 PASS AA=t;AC=2;AF=0.86;AFR_AF=0.56;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.95;LDAF=0.8637;RSQ=0.9956;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16376278 rs7365182 G A 100 PASS AA=a;AC=2;AF=0.86;AFR_AF=0.56;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8648;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16376319 rs7368151 T C 100 PASS AA=N;AC=2;AF=0.86;AFR_AF=0.56;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8648;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16376458 rs7368166 T C 100 PASS AA=N;AC=2;AF=0.83;AFR_AF=0.52;AMR_AF=0.87;AN=2;ASN_AF=0.96;AVGPOST=0.9723;ERATE=0.0044;EUR_AF=0.91;LDAF=0.8259;RSQ=0.9439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16380196 rs5253 T C 100 PASS AA=t;AC=2;AF=0.83;AFR_AF=0.61;AMR_AF=0.92;AN=2;ASN_AF=0.81;AVGPOST=0.9781;ERATE=0.0066;EUR_AF=0.96;LDAF=0.8296;RSQ=0.9583;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +1 16380243 rs2275166 A G 100 PASS AA=N;AC=2;AF=0.70;AFR_AF=0.82;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.60;LDAF=0.7027;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0129;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.56,-0.00 +1 16380252 rs2275167 C T 100 PASS AA=c;AC=2;AF=0.64;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.82;AVGPOST=0.9979;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6416;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.45,-0.00 +1 16382877 rs7517792 A G 100 PASS AA=N;AC=2;AF=0.78;AFR_AF=0.67;AMR_AF=0.80;AN=2;ASN_AF=0.84;AVGPOST=0.9943;ERATE=0.0005;EUR_AF=0.79;LDAF=0.7749;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +1 16383336 rs12746138 G C 100 PASS AA=g;AC=2;AF=0.63;AFR_AF=0.37;AMR_AF=0.68;AN=2;ASN_AF=0.77;AVGPOST=0.9535;ERATE=0.0147;EUR_AF=0.66;LDAF=0.6175;RSQ=0.9365;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:1.850:-4.70,-0.65,-0.11 +1 16383448 rs10803415 A C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.76;AMR_AF=0.82;AN=2;ASN_AF=0.76;AVGPOST=0.9140;ERATE=0.0309;EUR_AF=0.89;LDAF=0.8021;RSQ=0.7864;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.300:-4.70,-0.02,-1.30 +1 16385980 rs3884058 G A 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.50;AMR_AF=0.77;AN=2;ASN_AF=0.83;AVGPOST=0.9800;ERATE=0.0063;EUR_AF=0.76;LDAF=0.7155;RSQ=0.9633;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.41,-0.00 +1 16386416 rs9442230 G A 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.50;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9914;ERATE=0.0006;EUR_AF=0.76;LDAF=0.7213;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-4.40,-0.56,-0.14 +1 16388565 rs7524413 C G 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.81;AVGPOST=0.9570;ERATE=0.0009;EUR_AF=0.44;LDAF=0.4400;RSQ=0.9503;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.83,-0.00 +1 16388646 rs2863456 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.71;AMR_AF=0.85;AN=2;ASN_AF=0.85;AVGPOST=0.9685;ERATE=0.0072;EUR_AF=0.87;LDAF=0.8215;RSQ=0.9133;SNPSOURCE=LOWCOV,EXOME;THETA=0.0070;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.53,-0.00 +1 16451767 rs3754334 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.29;AN=2;ASN_AF=0.12;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2302;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16464673 rs2230597 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.31;AMR_AF=0.41;AN=2;ASN_AF=0.13;AVGPOST=0.9817;ERATE=0.0118;EUR_AF=0.42;LDAF=0.3176;RSQ=0.9691;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16475123 rs6678616 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2294;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16475126 rs6678618 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.17;AMR_AF=0.35;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2294;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16525056 rs451260 G T 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.13;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2139;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16528233 rs221037 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.29;AMR_AF=0.37;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2555;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16529117 rs221039 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.17;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.27;LDAF=0.2229;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16532498 rs41269185 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0489;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16532803 rs221050 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2215;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16532848 rs221051 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2216;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.40 +1 16534002 rs221056 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2194;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16534255 rs221057 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2194;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16534646 rs221058 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0016;EUR_AF=0.28;LDAF=0.2062;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16534730 rs221059 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.34;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2194;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +1 16559541 rs3738631 C G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.58;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3141;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16577908 rs12069239 G C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.46;AMR_AF=0.25;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2984;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16725818 rs41310375 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.18;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0932;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16726036 rs61769432 A G 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16730413 rs61769436 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.09;LDAF=0.0480;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16731510 rs525409 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.34;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2159;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 16731646 rs3106498 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.82;AMR_AF=0.97;AN=2;ASN_AF=0.97;AVGPOST=0.9886;ERATE=0.0036;EUR_AF=0.97;LDAF=0.9372;RSQ=0.9378;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 16731647 rs526481 G C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.28;AMR_AF=0.42;AN=2;ASN_AF=0.67;AVGPOST=0.9809;ERATE=0.0148;EUR_AF=0.48;LDAF=0.4747;RSQ=0.9739;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16736132 rs4661746 T C 100 PASS AA=t;AC=1;AF=0.20;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9990;ERATE=0.0035;EUR_AF=0.31;LDAF=0.2006;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 16736546 rs10907226 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.61;AMR_AF=0.57;AN=2;ASN_AF=0.93;AVGPOST=0.9961;ERATE=0.0013;EUR_AF=0.65;LDAF=0.6994;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17248500 rs6683035 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.34;AMR_AF=0.50;AN=2;ASN_AF=0.53;AVGPOST=0.9536;ERATE=0.0214;EUR_AF=0.52;LDAF=0.4856;RSQ=0.8755;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-1.93,-0.01,-4.00 +1 17248532 rs6586566 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.1314;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.91,-0.06 +1 17256850 rs147451230 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.03;AN=2;ASN_AF=0.0035;AVGPOST=0.9952;ERATE=0.0044;EUR_AF=0.02;LDAF=0.0158;RSQ=0.8765;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17270751 rs12025984 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.03;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=0.9285;ERATE=0.0090;EUR_AF=0.21;LDAF=0.2536;RSQ=0.8396;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|0:1.000:-2.54,-0.02,-1.47 +1 17295679 rs4920574 T C 100 PASS AA=C;AC=1;AF=0.94;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.89;LDAF=0.9433;RSQ=0.9837;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17297289 rs9435656 C T 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.33;AMR_AF=0.73;AN=2;ASN_AF=0.85;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.75;LDAF=0.6781;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17301448 rs2235933 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.24;AMR_AF=0.41;AN=2;ASN_AF=0.60;AVGPOST=0.9917;ERATE=0.0008;EUR_AF=0.28;LDAF=0.3749;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.81,-0.07 +1 17313454 rs7531163 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.15;AMR_AF=0.38;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3259;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17314702 rs3738815 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.56;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3078;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17359676 rs1022580 C A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.89;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9575;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +1 17371223 rs2647169 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.06;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1042;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17380497 rs2746462 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.87;AMR_AF=0.97;AN=2;ASN_AF=0.99;AVGPOST=0.9747;ERATE=0.0074;EUR_AF=0.96;LDAF=0.9397;RSQ=0.8324;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.03,-0.04 +1 17395521 rs2076598 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.28;AMR_AF=0.53;AN=2;ASN_AF=0.43;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=0.60;LDAF=0.4735;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17396703 rs2076595 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.29;AMR_AF=0.53;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4753;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17402135 rs3818034 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5398;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17402159 rs3818033 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.66;LDAF=0.5388;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17402255 rs3818032 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.44;AMR_AF=0.59;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5397;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17402347 rs2647205 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9744;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 17405809 rs2057096 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4684;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17405916 rs2057095 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4684;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17405949 rs2057094 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.56;AMR_AF=0.55;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5324;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17409017 rs2076617 G A 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.28;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3812;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17410364 rs1883913 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.26;AMR_AF=0.53;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.4611;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17413121 rs2076615 A C 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.27;AMR_AF=0.29;AN=2;ASN_AF=0.52;AVGPOST=0.9960;ERATE=0.0074;EUR_AF=0.25;LDAF=0.3318;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17418883 rs2647184 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.95;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9639;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 17418894 rs2273111 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.38;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17419066 rs11203298 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.38;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5055;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17550225 rs3003481 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9304;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 17555316 rs2977233 C G 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.08;AVGPOST=0.9952;ERATE=0.0091;EUR_AF=0.44;LDAF=0.3057;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0154;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17563967 rs2977306 T C 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.54;AMR_AF=0.41;AN=2;ASN_AF=0.43;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4467;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17570466 rs2293921 T C 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.61;AMR_AF=0.44;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4766;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +1 17575645 rs3763589 A C 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=0.9984;ERATE=0.0029;EUR_AF=0.07;LDAF=0.0884;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17586134 rs3750300 A G 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.08;AMR_AF=0.14;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1092;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17593316 rs2272629 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0963;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17597655 rs2293916 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0822;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17597721 rs4595409 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9970;ERATE=0.0006;EUR_AF=0.27;LDAF=0.2774;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.50 +1 17609448 rs2293920 G T 100 PASS AA=g;AC=1;AF=0.43;AFR_AF=0.17;AMR_AF=0.38;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4269;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17657534 rs11203366 G A 100 PASS AA=g;AC=1;AF=0.55;AFR_AF=0.46;AMR_AF=0.53;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0009;EUR_AF=0.59;LDAF=0.5503;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17657616 rs11203367 T C 100 PASS AA=N;AC=1;AF=0.56;AFR_AF=0.49;AMR_AF=0.53;AN=2;ASN_AF=0.59;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5571;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17660499 rs874881 G C 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.41;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9837;ERATE=0.0115;EUR_AF=0.54;LDAF=0.5056;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17662639 rs2240340 T C 100 PASS AA=t;AC=1;AF=0.54;AFR_AF=0.42;AMR_AF=0.52;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5384;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17662662 rs1748033 T C 100 PASS AA=N;AC=1;AF=0.62;AFR_AF=0.55;AMR_AF=0.57;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6221;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17662751 rs1621005 C G 100 PASS AA=N;AC=1;AF=0.63;AFR_AF=0.60;AMR_AF=0.57;AN=2;ASN_AF=0.64;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6334;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17674402 rs2240336 C T 100 PASS AA=-;AC=1;AF=0.51;AFR_AF=0.53;AMR_AF=0.44;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5057;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17674537 rs2240335 C A 100 PASS AA=-;AC=1;AF=0.42;AFR_AF=0.36;AMR_AF=0.39;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4214;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17736578 rs2762890 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.70;AMR_AF=0.67;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6340;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 17914122 rs35497285 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.0020;AMR_AF=0.12;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1013;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 17991052 rs6695710 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9998;RSQ=0.1069;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +1 18023365 rs2270978 C T 100 PASS AA=c;AC=2;AF=0.77;AFR_AF=0.59;AMR_AF=0.86;AN=2;ASN_AF=0.83;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7737;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 18023509 rs2270977 T C 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.74;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.80;LDAF=0.8246;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.68,-0.00 +1 18023690 rs2270976 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.68;AMR_AF=0.87;AN=2;ASN_AF=0.90;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.81;LDAF=0.8119;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 18554345 rs61762155 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2103;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 18554356 rs3738087 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2103;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 18703523 rs2271859 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.03;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.31;LDAF=0.1843;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 18704862 rs1043459 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.72;AMR_AF=0.53;AN=2;ASN_AF=0.60;AVGPOST=0.9978;ERATE=0.0008;EUR_AF=0.45;LDAF=0.5637;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19027239 rs2743201 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.62;AMR_AF=0.38;AN=2;ASN_AF=0.57;AVGPOST=0.9987;ERATE=0.0010;EUR_AF=0.26;LDAF=0.4422;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 19029546 rs1416464 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.62;AMR_AF=0.38;AN=2;ASN_AF=0.57;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4420;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 19166829 rs41273167 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0147;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19175846 rs28374389 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.26;AN=2;ASN_AF=0.0017;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1458;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19181015 rs34447754 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.09;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2401;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19181082 rs28470550 A C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.10;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2427;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19181393 rs35874116 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.34;AMR_AF=0.31;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2657;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19184077 rs68081213 A G 100 PASS AA=-;AC=1;AF=0.28;AFR_AF=0.37;AMR_AF=0.32;AN=2;ASN_AF=0.10;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2771;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19186129 rs9701796 G C 100 PASS AA=c;AC=2;AF=0.78;AFR_AF=0.79;AMR_AF=0.83;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7806;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 19199487 rs35255325 A G 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.21;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19201956 rs2230708 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.73;AMR_AF=0.78;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7334;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19202770 rs7550822 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.75;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9237;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 19202896 rs2230707 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.61;AN=2;ASN_AF=0.63;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5239;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19202917 rs7550938 T C 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.48;AMR_AF=0.73;AN=2;ASN_AF=0.71;AVGPOST=0.9985;ERATE=0.0031;EUR_AF=0.70;LDAF=0.6563;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19202926 rs2230706 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.48;AMR_AF=0.73;AN=2;ASN_AF=0.71;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6561;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.18,-0.00,-5.00 +1 19203997 rs2230705 C G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.71;AMR_AF=0.72;AN=2;ASN_AF=0.47;AVGPOST=0.9885;ERATE=0.0177;EUR_AF=0.71;LDAF=0.6482;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0130;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +1 19204154 rs6426813 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.70;AMR_AF=0.83;AN=2;ASN_AF=0.93;AVGPOST=0.9829;ERATE=0.0009;EUR_AF=0.73;LDAF=0.7902;RSQ=0.9629;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +1 19215834 rs941495 T C 100 PASS AA=C;AC=1;AF=0.98;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9773;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.46 +1 19500088 rs41273197 A G 100 PASS AA=A;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0014;RSQ=0.9594;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 19582563 rs1557133 G A 100 PASS AA=A;AC=1;AF=0.90;AFR_AF=0.91;AMR_AF=0.89;AN=2;ASN_AF=0.93;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8980;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19595137 rs2235795 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.41;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6587;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 19596124 rs2235794 C T 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.41;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6595;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.30,-0.00 +1 19596156 rs6665756 G T 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.41;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6608;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.87,-0.00 +1 19609254 rs1738025 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.71;AMR_AF=0.87;AN=2;ASN_AF=0.83;AVGPOST=0.9862;ERATE=0.0077;EUR_AF=0.83;LDAF=0.8110;RSQ=0.9701;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.09,-0.04 +1 19611227 rs1065658 G A 100 PASS AA=.;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.16;AN=2;ASN_AF=0.02;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1241;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 19611241 rs1738023 T C 100 PASS AA=.;AC=2;AF=0.80;AFR_AF=0.63;AMR_AF=0.88;AN=2;ASN_AF=0.84;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.85;LDAF=0.8015;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 19612492 rs148340817 C T 100 PASS AA=.;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9963;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0135;RSQ=0.8962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.650:-0.40,-0.23,-1.91 +1 19638309 rs2227295 A G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.85;AMR_AF=0.65;AN=2;ASN_AF=0.57;AVGPOST=0.9912;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7013;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +1 19651102 rs41264067 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1934;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19651277 rs41264069 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1751;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19651300 rs41264071 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1746;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19652063 rs11558390 G A 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1751;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 19950062 rs1737428 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.69;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3160;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 19981791 rs2294630 A G 100 PASS AA=g;AC=2;AF=0.46;AFR_AF=0.71;AMR_AF=0.49;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4634;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 19992372 rs8192529 G T 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0296;RSQ=0.9449;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 20020993 rs4370779 A G 100 PASS AA=a;AC=2;AF=0.63;AFR_AF=0.50;AMR_AF=0.67;AN=2;ASN_AF=0.60;AVGPOST=0.9866;ERATE=0.0025;EUR_AF=0.71;LDAF=0.6315;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 20020994 rs4515815 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.13;AMR_AF=0.52;AN=2;ASN_AF=0.25;AVGPOST=0.9873;ERATE=0.0144;EUR_AF=0.56;LDAF=0.3753;RSQ=0.9831;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 20141528 rs1541185 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.26;AMR_AF=0.39;AN=2;ASN_AF=0.35;AVGPOST=0.9964;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3025;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 20216860 rs10799593 G A 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.58;AMR_AF=0.56;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4693;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 20305065 rs10732279 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.82;AMR_AF=0.79;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0013;EUR_AF=0.78;LDAF=0.8310;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 20412723 rs2020881 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0174;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 20442054 rs584367 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.94;AMR_AF=0.67;AN=2;ASN_AF=0.76;AVGPOST=0.9994;ERATE=0.0013;EUR_AF=0.58;LDAF=0.7228;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 20960230 rs45530340 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.12;AVGPOST=0.9972;ERATE=0.0007;EUR_AF=0.18;LDAF=0.1355;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-0.37,-0.41,-0.72 +1 20964328 rs2298298 A G 100 PASS AA=a;AC=2;AF=0.83;AFR_AF=0.74;AMR_AF=0.84;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8290;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 20972048 rs3131713 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.73;AMR_AF=0.84;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.89;LDAF=0.8258;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 20975168 rs71653623 C T 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0256;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 20977221 rs686658 A T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.79;AMR_AF=0.85;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8382;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.69,-0.00 +1 20978832 rs6893 T C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.75;AMR_AF=0.84;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8327;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.53,-0.01 +1 20980880 rs607254 G A 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.38;AMR_AF=0.43;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.3857;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +1 20982631 rs4704 G A 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.74;AMR_AF=0.60;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6005;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 20987873 rs537816 G C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9957;ERATE=0.0013;EUR_AF=1.00;LDAF=0.9793;RSQ=0.9136;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 20991273 rs56070322 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.18;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1323;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 20992819 rs631357 G C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.74;AMR_AF=0.78;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.82;LDAF=0.7257;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 21024901 rs522496 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.46;AMR_AF=0.68;AN=2;ASN_AF=0.63;AVGPOST=0.9992;ERATE=0.0023;EUR_AF=0.69;LDAF=0.6210;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 21030902 rs900039 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.17;AMR_AF=0.32;AN=2;ASN_AF=0.07;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.46;LDAF=0.2683;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-1.71,-0.01,-5.00 +1 21040079 rs10799661 C A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.75;AMR_AF=0.63;AN=2;ASN_AF=0.91;AVGPOST=0.9989;ERATE=0.0037;EUR_AF=0.74;LDAF=0.7663;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 21043926 rs604645 T C 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.90;AVGPOST=0.9977;ERATE=0.0005;EUR_AF=0.72;LDAF=0.7771;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 21044161 rs601329 A G 100 PASS AA=G;AC=1;AF=0.74;AFR_AF=0.66;AMR_AF=0.61;AN=2;ASN_AF=0.90;AVGPOST=0.9911;ERATE=0.0015;EUR_AF=0.72;LDAF=0.7346;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 21044219 rs601392 A C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9822;ERATE=0.0011;EUR_AF=0.82;LDAF=0.8924;RSQ=0.9325;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-3.52,-0.50,-0.16 +1 21050958 rs592060 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.76;AN=2;ASN_AF=0.98;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8674;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +1 21091861 rs1985278 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.39;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.37;LDAF=0.2628;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 21167404 rs7553394 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9502;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 21180181 rs2305463 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.36;AMR_AF=0.56;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5813;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 21188703 rs10916885 A T 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.35;AMR_AF=0.56;AN=2;ASN_AF=0.81;AVGPOST=0.9960;ERATE=0.0102;EUR_AF=0.54;LDAF=0.5730;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 21188871 rs17409373 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2505;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 21571601 rs12562197 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.26;LDAF=0.1707;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 21573722 rs2229450 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0038;EUR_AF=0.25;LDAF=0.1637;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 21583973 rs3026879 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.1586;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 21795388 rs1827293 A G 100 PASS AA=.;AC=1;AF=0.46;AFR_AF=0.18;AMR_AF=0.52;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.54;LDAF=0.4580;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 21799823 rs1971328 A G 100 PASS AA=.;AC=2;AF=0.64;AFR_AF=0.44;AMR_AF=0.72;AN=2;ASN_AF=0.74;AVGPOST=0.9947;ERATE=0.0089;EUR_AF=0.65;LDAF=0.6395;RSQ=0.9908;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 21801346 rs7531217 G A 100 PASS AA=.;AC=2;AF=0.74;AFR_AF=0.57;AMR_AF=0.82;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.7386;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 21804815 rs7535654 T G 100 PASS AA=.;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9527;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.06,-0.00 +1 21807521 rs200206527 A T 100 PASS AA=.;AC=1;AF=0.24;AFR_AF=0.30;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9362;ERATE=0.0105;EUR_AF=0.22;LDAF=0.2413;RSQ=0.8437;SNPSOURCE=EXOME;THETA=0.0093;VT=SNP GT:DS:GL 0|1:0.750:-0.26,-0.34,-4.10 +1 21808159 rs71512991 G A 100 PASS AA=.;AC=1;AF=0.49;AFR_AF=0.41;AMR_AF=0.53;AN=2;ASN_AF=0.54;AVGPOST=0.8776;ERATE=0.0581;EUR_AF=0.50;LDAF=0.4948;RSQ=0.6721;SNPSOURCE=EXOME;THETA=0.0065;VT=SNP GT:DS:GL 0|1:1.000:-0.20,-0.44,-2.07 +1 21808207 rs146564096 A C 100 PASS AA=.;AC=2;AF=0.53;AFR_AF=0.34;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=0.9162;ERATE=0.0045;EUR_AF=0.54;LDAF=0.5253;RSQ=0.8574;SNPSOURCE=EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:1.650:-0.48,-0.48,-0.48 +1 21808223 rs145079058 T C 100 PASS AA=.;AC=2;AF=0.54;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.63;AVGPOST=0.9126;ERATE=0.0006;EUR_AF=0.56;LDAF=0.5405;RSQ=0.8492;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|1:1.650:-0.48,-0.48,-0.48 +1 21809051 rs201590042 G A 100 PASS AA=.;AC=2;AF=0.55;AFR_AF=0.38;AMR_AF=0.59;AN=2;ASN_AF=0.62;AVGPOST=0.7785;ERATE=0.0237;EUR_AF=0.59;LDAF=0.5378;RSQ=0.5829;SNPSOURCE=EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|1:1.650:-2.38,-0.42,-0.21 +1 21889635 rs1780316 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.85;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9354;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 21896767 rs1256328 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1513;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 21904131 rs34605986 T C 100 PASS AA=t;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.0017;AVGPOST=0.9958;ERATE=0.0005;EUR_AF=0.11;LDAF=0.0594;RSQ=0.9745;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 21929260 rs829368 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.84;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9575;ERATE=0.0334;EUR_AF=0.82;LDAF=0.8593;RSQ=0.8707;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +1 21932530 rs1767443 C A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.74;AMR_AF=0.83;AN=2;ASN_AF=0.96;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.75;LDAF=0.8165;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.63,-0.01 +1 21932625 rs2275365 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.24;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.09;LDAF=0.1431;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.62 +1 21934667 rs829371 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.48;AMR_AF=0.35;AN=2;ASN_AF=0.45;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.51;LDAF=0.4596;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 21935433 rs861212 G T 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.22;AMR_AF=0.50;AN=2;ASN_AF=0.68;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.46;LDAF=0.4722;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 21939741 rs1256282 G C 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.41;AMR_AF=0.63;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4745;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 21940555 rs2275363 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.35;AMR_AF=0.30;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.45;LDAF=0.4031;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 21943820 rs2275360 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.20;AMR_AF=0.47;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.25;LDAF=0.3429;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.44,-0.00,-5.00 +1 22013771 rs10493008 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.35;AMR_AF=0.62;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4950;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22032570 rs333173 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.1558;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 22063149 rs10753517 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.38;AMR_AF=0.73;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.63;LDAF=0.5983;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22084145 rs17458515 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.09;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0608;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 22109370 rs10917042 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.04;AMR_AF=0.49;AN=2;ASN_AF=0.59;AVGPOST=0.9935;ERATE=0.0004;EUR_AF=0.23;LDAF=0.3245;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.05,-0.00,-3.74 +1 22141206 rs10917051 A C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.44;AMR_AF=0.76;AN=2;ASN_AF=0.65;AVGPOST=0.9872;ERATE=0.0005;EUR_AF=0.70;LDAF=0.6360;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.12,-0.47,-0.18 +1 22304831 rs143312313 C A 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.21;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9628;ERATE=0.0225;EUR_AF=0.06;LDAF=0.1309;RSQ=0.8730;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:0.700:-0.05,-0.99,-5.00 +1 22307340 rs7528228 C T 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.55;AMR_AF=0.86;AN=2;ASN_AF=0.62;AVGPOST=0.9792;ERATE=0.0007;EUR_AF=0.83;LDAF=0.7187;RSQ=0.9671;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.32,-0.00 +1 22307538 rs7528405 C T 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.88;AMR_AF=0.97;AN=2;ASN_AF=0.71;AVGPOST=0.9974;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8894;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 22310139 rs10733031 T G 100 PASS AA=t;AC=2;AF=0.84;AFR_AF=0.72;AMR_AF=0.94;AN=2;ASN_AF=0.71;AVGPOST=0.9955;ERATE=0.0004;EUR_AF=0.97;LDAF=0.8378;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.82,-0.01 +1 22310145 rs10733032 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.72;AMR_AF=0.94;AN=2;ASN_AF=0.71;AVGPOST=0.9939;ERATE=0.0008;EUR_AF=0.97;LDAF=0.8379;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +1 22310190 rs41266015 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.08;AN=2;ASN_AF=0.16;AVGPOST=0.9962;ERATE=0.0005;EUR_AF=0.08;LDAF=0.1105;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-2.26,-0.01,-1.70 +1 22310262 rs10733033 G C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.73;AMR_AF=0.90;AN=2;ASN_AF=0.66;AVGPOST=0.9630;ERATE=0.0053;EUR_AF=0.94;LDAF=0.8112;RSQ=0.9303;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.64,-0.01 +1 22310662 rs6426735 G T 100 PASS AA=g;AC=2;AF=0.83;AFR_AF=0.72;AMR_AF=0.94;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8320;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 22310674 rs7538207 C T 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.72;AMR_AF=0.95;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.98;LDAF=0.8448;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 22310725 rs3820287 G C 100 PASS AA=c;AC=2;AF=0.83;AFR_AF=0.72;AMR_AF=0.94;AN=2;ASN_AF=0.71;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8321;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +1 22310824 rs1803531 T C 100 PASS AA=C;AC=2;AF=0.86;AFR_AF=0.85;AMR_AF=0.94;AN=2;ASN_AF=0.68;AVGPOST=0.9779;ERATE=0.0053;EUR_AF=0.97;LDAF=0.8575;RSQ=0.9456;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.64,-0.00 +1 22313017 rs61777963 G T 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.09;AMR_AF=0.14;AN=2;ASN_AF=0.16;AVGPOST=0.9950;ERATE=0.0005;EUR_AF=0.20;LDAF=0.1559;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.150:-5.00,-0.84,-0.07 +1 22313161 rs1803530 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=0.72;AVGPOST=0.9943;ERATE=0.0024;EUR_AF=1.00;LDAF=0.8722;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.26,-0.02 +1 22313197 rs34963341 C A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.64;AMR_AF=0.57;AN=2;ASN_AF=0.35;AVGPOST=0.9784;ERATE=0.0016;EUR_AF=0.75;LDAF=0.5892;RSQ=0.9710;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.67,-0.10 +1 22315738 rs4655006 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.40;AMR_AF=0.67;AN=2;ASN_AF=0.39;AVGPOST=0.8493;ERATE=0.0378;EUR_AF=0.70;LDAF=0.5243;RSQ=0.7048;SNPSOURCE=EXOME;THETA=0.0179;VT=SNP GT:DS:GL 0|1:1.050:-2.87,-0.45,-0.19 +1 22336277 rs3820285 C G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.93;AMR_AF=0.91;AN=2;ASN_AF=0.71;AVGPOST=0.9969;ERATE=0.0011;EUR_AF=0.98;LDAF=0.8865;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 22336371 rs3806297 C A 100 PASS AA=A;AC=2;AF=0.52;AFR_AF=0.50;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=0.9800;ERATE=0.0112;EUR_AF=0.72;LDAF=0.5185;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.71,-0.01 +1 22832743 rs209732 A T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.93;AMR_AF=0.77;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7954;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 22835677 rs209729 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.93;AMR_AF=0.82;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.8378;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 22837849 rs209727 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.76;AMR_AF=0.60;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.5005;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 22846709 rs209720 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9969;RSQ=0.9685;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 22848972 rs61769198 A C 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.08;AMR_AF=0.23;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1238;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22852904 rs2281355 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1481;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 22902772 rs56218493 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.05;AMR_AF=0.09;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.0718;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22913153 rs638058 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.72;AMR_AF=0.40;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.36;LDAF=0.4290;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22915674 rs56044578 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0535;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22915753 rs606002 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.69;AMR_AF=0.39;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4268;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22915858 rs76452513 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.06;AMR_AF=0.07;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0590;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22919904 rs209696 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.39;AMR_AF=0.34;AN=2;ASN_AF=0.15;AVGPOST=0.9975;ERATE=0.0004;EUR_AF=0.27;LDAF=0.2761;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.27,-0.00,-5.00 +1 22922560 rs209691 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.76;AMR_AF=0.52;AN=2;ASN_AF=0.29;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4828;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22925292 rs664340 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +1 22927126 rs55821293 C T 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0477;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22927314 rs209702 A G 100 PASS AA=g;AC=1;AF=0.47;AFR_AF=0.68;AMR_AF=0.49;AN=2;ASN_AF=0.37;AVGPOST=0.9816;ERATE=0.0105;EUR_AF=0.40;LDAF=0.4685;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22927408 rs56055011 G A 100 PASS AA=g;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0475;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 22928265 rs209700 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.95;AMR_AF=0.61;AN=2;ASN_AF=0.37;AVGPOST=0.9902;ERATE=0.0004;EUR_AF=0.43;LDAF=0.5589;RSQ=0.9870;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.61 +1 22965438 rs172378 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.80;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5848;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.18,-0.00 +1 22974297 rs9434 C A 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.89;AMR_AF=0.47;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.38;LDAF=0.5736;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 23191746 rs45550439 G T 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.10;AN=2;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.16;LDAF=0.0747;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 23219493 rs309472 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23236826 rs309497 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.76;AMR_AF=0.57;AN=2;ASN_AF=0.26;AVGPOST=0.9981;ERATE=0.0014;EUR_AF=0.48;LDAF=0.5003;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 23399932 rs967605 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.80;AMR_AF=0.64;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7802;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23418153 rs10799790 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.83;AMR_AF=0.64;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7880;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23419261 rs477717 G A 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.65;AMR_AF=0.61;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7423;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23419374 rs3765407 G T 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.59;AMR_AF=0.60;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7276;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23419383 rs477830 C T 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.65;AMR_AF=0.61;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7423;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23419855 rs1983965 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.83;AMR_AF=0.64;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7893;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23637846 rs41268113 C T 100 PASS AA=c;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0042;RSQ=0.9474;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 23688933 rs2849028 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.20;AMR_AF=0.66;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5681;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 23689083 rs3795308 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0910;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 23710805 rs605468 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.77;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8797;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23713952 rs676363 T G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.89;AVGPOST=0.9941;ERATE=0.0035;EUR_AF=0.92;LDAF=0.8742;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +1 23735241 rs1198423 G T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.77;AMR_AF=0.86;AN=2;ASN_AF=0.91;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.88;LDAF=0.8609;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 23751140 rs71514235 G T 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.09;AMR_AF=0.60;AN=2;ASN_AF=0.58;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5097;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 23836364 rs2075993 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.05;AMR_AF=0.39;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4171;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-3.36,-0.00,-5.00 +1 23847464 rs2075995 C A 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.07;AMR_AF=0.38;AN=2;ASN_AF=0.64;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4239;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 23885498 rs11574 T C 100 PASS AA=C;AC=1;AF=0.86;AFR_AF=0.99;AMR_AF=0.75;AN=2;ASN_AF=0.98;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8651;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 23885599 rs2067053 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.64;AMR_AF=0.36;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4126;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24018277 rs10917413 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9897;ERATE=0.0161;EUR_AF=0.97;LDAF=0.9573;RSQ=0.8978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24022437 rs2280437 A G 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.17;AMR_AF=0.29;AN=2;ASN_AF=0.55;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3660;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24083494 rs2076345 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.11;AMR_AF=0.25;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2355;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24083649 rs2076346 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.55;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2835;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 24122986 rs760941 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.43;AMR_AF=0.61;AN=2;ASN_AF=0.59;AVGPOST=0.9962;ERATE=0.0036;EUR_AF=0.60;LDAF=0.5601;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 24134721 rs719400 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8954;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24143932 rs2076344 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=0.79;AVGPOST=0.9919;ERATE=0.0037;EUR_AF=0.90;LDAF=0.8841;RSQ=0.9724;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24180962 rs13551 T C 100 PASS AA=t;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.27;AN=2;ASN_AF=0.25;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2512;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24200983 rs2229583 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.84;AMR_AF=0.65;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6444;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24201094 rs2229581 G C 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6371;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24201109 rs2229580 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6371;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24201262 rs2502993 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.80;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=0.9947;ERATE=0.0005;EUR_AF=0.59;LDAF=0.6305;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24201357 rs4649124 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6371;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24201448 rs3003336 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6372;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24201643 rs2501431 G A 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.81;AMR_AF=0.64;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6371;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24201919 rs2502992 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.60;AMR_AF=0.56;AN=2;ASN_AF=0.47;AVGPOST=0.9920;ERATE=0.0051;EUR_AF=0.46;LDAF=0.5138;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24201920 rs2501432 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.61;AMR_AF=0.56;AN=2;ASN_AF=0.47;AVGPOST=0.9933;ERATE=0.0028;EUR_AF=0.47;LDAF=0.5166;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24383819 rs7540491 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.53;AMR_AF=0.54;AN=2;ASN_AF=0.97;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.73;LDAF=0.7166;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24400633 rs10903083 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9795;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24406535 rs35446243 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.0035;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.18;LDAF=0.1093;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 24416059 rs4393101 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9788;RSQ=0.9762;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.67,-0.00 +1 24416628 rs72648548 T C 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.04;AVGPOST=0.9974;ERATE=0.0007;EUR_AF=0.06;LDAF=0.0477;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24447468 rs3795299 G C 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.28;AMR_AF=0.35;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4391;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24465113 rs10903022 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.22;AMR_AF=0.49;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0016;EUR_AF=0.37;LDAF=0.4538;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24485518 rs10751769 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24485941 rs4649195 T C 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.45;AMR_AF=0.67;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.72;LDAF=0.5983;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24658063 rs2486668 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.20;AMR_AF=0.15;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0032;EUR_AF=0.17;LDAF=0.1746;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24680915 rs12030057 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.07;AMR_AF=0.36;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2880;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24706113 rs3765428 G A 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.47;AMR_AF=0.47;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4282;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24706269 rs1064842 A G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.49;AMR_AF=0.48;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4333;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24706292 rs1142057 T C 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.35;AMR_AF=0.45;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3953;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24779855 rs2272934 T C 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.17;AMR_AF=0.41;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0028;EUR_AF=0.28;LDAF=0.3256;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24785393 rs2272935 C T 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3190;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 24861704 rs196432 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.44;AMR_AF=0.39;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.48;LDAF=0.5224;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 24927561 rs4553122 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.49;AMR_AF=0.53;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5457;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 25291010 rs6672420 A T 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.40;AMR_AF=0.66;AN=2;ASN_AF=0.66;AVGPOST=0.9946;ERATE=0.0064;EUR_AF=0.49;LDAF=0.5445;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 25570081 rs1043879 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.29;LDAF=0.1450;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 25611035 rs2301153 G C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.18;AMR_AF=0.69;AN=2;ASN_AF=0.78;AVGPOST=0.9705;ERATE=0.0005;EUR_AF=0.76;LDAF=0.6193;RSQ=0.9640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.25,-0.03 +1 25717365 rs609320 C G 100 PASS AA=c;AC=1;AF=0.16;AFR_AF=0.08;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=0.9984;ERATE=0.0006;EUR_AF=0.16;LDAF=0.1624;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 25780893 rs61775167 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.20;AMR_AF=0.51;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4863;RSQ=0.9998;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 25889632 rs6687605 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.34;AMR_AF=0.48;AN=2;ASN_AF=0.50;AVGPOST=0.9919;ERATE=0.0063;EUR_AF=0.49;LDAF=0.4568;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 25889672 rs6688931 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.30;AMR_AF=0.46;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4465;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 25890189 rs28969504 A G 100 PASS AA=a;AC=1;AF=0.59;AFR_AF=0.81;AMR_AF=0.59;AN=2;ASN_AF=0.51;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.52;LDAF=0.5939;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26098107 rs2072747 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.39;AMR_AF=0.58;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6024;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 26109237 rs12567324 A G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.52;AMR_AF=0.59;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6266;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 26110143 rs3767877 G A 100 PASS AA=A;AC=2;AF=0.64;AFR_AF=0.56;AMR_AF=0.60;AN=2;ASN_AF=0.72;AVGPOST=0.9992;ERATE=0.0008;EUR_AF=0.64;LDAF=0.6351;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 26131654 rs7349185 G A 100 PASS AA=A;AC=2;AF=0.83;AFR_AF=0.75;AMR_AF=0.88;AN=2;ASN_AF=0.92;AVGPOST=0.9888;ERATE=0.0032;EUR_AF=0.79;LDAF=0.8319;RSQ=0.9704;SNPSOURCE=LOWCOV,EXOME;THETA=0.0074;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 26138136 rs760598 C A 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.40;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7517;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +1 26138262 rs760597 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.57;AMR_AF=0.84;AN=2;ASN_AF=0.96;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7924;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.09,-0.00 +1 26139137 rs10902685 C T 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.23;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7148;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +1 26140573 rs2294228 C A 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.23;AMR_AF=0.82;AN=2;ASN_AF=0.96;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7145;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 26152758 rs6598924 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.81;AMR_AF=0.87;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8578;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 26310555 rs201037372 T C 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26357667 rs11247848 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1738;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26368261 rs1316852 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.11;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0754;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26487940 rs3748856 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.04;AMR_AF=0.23;AN=2;ASN_AF=0.25;AVGPOST=0.9957;ERATE=0.0004;EUR_AF=0.33;LDAF=0.2269;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.17,-0.00,-5.00 +1 26488019 rs3748857 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.01;AMR_AF=0.35;AN=2;ASN_AF=0.60;AVGPOST=0.9881;ERATE=0.0018;EUR_AF=0.12;LDAF=0.2607;RSQ=0.9791;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.45,-2.38 +1 26496455 rs2232648 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.21;AN=2;ASN_AF=0.24;AVGPOST=0.9947;ERATE=0.0008;EUR_AF=0.33;LDAF=0.2222;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-0.11,-0.66,-4.70 +1 26496651 rs7087 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.64;AMR_AF=0.52;AN=2;ASN_AF=0.66;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.29;LDAF=0.5037;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-0.05,-0.95,-5.00 +1 26496870 rs2232654 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.36;AMR_AF=0.49;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4429;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26508480 rs2275945 T C 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.14;AMR_AF=0.37;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2967;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26511700 rs2783680 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.48;AMR_AF=0.75;AN=2;ASN_AF=0.97;AVGPOST=0.9950;ERATE=0.0007;EUR_AF=0.59;LDAF=0.6887;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.18,-0.03 +1 26524854 rs17163663 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0110;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26582091 rs3795686 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2266;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26608782 rs34209692 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.08;AMR_AF=0.23;AN=2;ASN_AF=0.25;AVGPOST=0.9935;ERATE=0.0009;EUR_AF=0.31;LDAF=0.2293;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26608814 rs6672357 A G 100 PASS AA=-;AC=1;AF=0.76;AFR_AF=0.85;AMR_AF=0.75;AN=2;ASN_AF=0.47;AVGPOST=0.9734;ERATE=0.0038;EUR_AF=0.92;LDAF=0.7618;RSQ=0.9514;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26609259 rs7522905 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.38;AMR_AF=0.42;AN=2;ASN_AF=0.30;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.63;LDAF=0.4510;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26609307 rs6598952 G T 100 PASS AA=T;AC=1;AF=0.76;AFR_AF=0.85;AMR_AF=0.73;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7577;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26610891 rs4332350 A C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.86;AMR_AF=0.73;AN=2;ASN_AF=0.47;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.93;LDAF=0.7594;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26612042 rs11247898 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.85;AMR_AF=0.73;AN=2;ASN_AF=0.47;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7583;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26627478 rs2276712 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.62;AMR_AF=0.61;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6101;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26646726 rs1071849 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.64;AMR_AF=0.62;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6179;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26646730 rs17645 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.64;AMR_AF=0.62;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.6179;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26689659 rs11247932 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.35;LDAF=0.2793;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26691174 rs11247933 C A 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.40;AN=2;ASN_AF=0.26;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.35;LDAF=0.2848;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26694245 rs10794531 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.59;AMR_AF=0.34;AN=2;ASN_AF=0.62;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4507;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26694260 rs10794532 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.24;AMR_AF=0.26;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3125;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26752992 rs4659441 T C 100 PASS AA=C;AC=1;AF=0.84;AFR_AF=0.86;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8418;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.22,-0.00,-5.00 +1 26774179 rs200852161 T G 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +1 26786627 rs3816539 G A 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.43;AMR_AF=0.28;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.4186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26856462 rs11800553 T G 100 PASS AA=g;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.92;AN=2;ASN_AF=0.94;AVGPOST=0.9673;ERATE=0.0029;EUR_AF=0.95;LDAF=0.9223;RSQ=0.8230;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +1 26872346 rs71640330 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.10;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0607;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.40 +1 26872554 rs12723936 A G 100 PASS AA=G;AC=2;AF=0.46;AFR_AF=0.48;AMR_AF=0.35;AN=2;ASN_AF=0.75;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.29;LDAF=0.4635;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.70,-0.00 +1 26879920 rs4970490 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9929;RSQ=0.9723;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 26887592 rs1064196 T C 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.50;AMR_AF=0.35;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4662;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 26898142 rs188158 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.60;AMR_AF=0.35;AN=2;ASN_AF=0.74;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.30;LDAF=0.4894;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.18,-0.00 +1 26899671 rs2296399 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.13;AMR_AF=0.09;AN=2;ASN_AF=0.25;AVGPOST=0.9954;ERATE=0.0244;EUR_AF=0.10;LDAF=0.1480;RSQ=0.9854;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 26899687 rs282178 C A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.28;AMR_AF=0.41;AN=2;ASN_AF=0.47;AVGPOST=0.9912;ERATE=0.0623;EUR_AF=0.24;LDAF=0.3399;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 26900735 rs282179 C G 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.74;AMR_AF=0.71;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7742;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 27210721 rs3170660 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.63;LDAF=0.8360;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.74,-0.00 +1 27278521 rs3010110 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.14;AN=2;ASN_AF=0.03;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.27;LDAF=0.1287;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27339103 rs4970471 G T 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.76;AVGPOST=0.8870;ERATE=0.0016;EUR_AF=0.17;LDAF=0.3402;RSQ=0.8351;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-2.39,-0.01,-1.66 +1 27426796 rs4266911 T C 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9802;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 27427041 rs4418629 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9826;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 27428321 rs6598870 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.28;AMR_AF=0.23;AN=2;ASN_AF=0.09;AVGPOST=0.9878;ERATE=0.0085;EUR_AF=0.34;LDAF=0.2443;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27435976 rs3738689 C G 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.36;LDAF=0.2290;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27480757 rs34306208 A G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.26;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2395;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27609980 rs6670124 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9826;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.80,-0.00 +1 27660568 rs35771571 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.40;AMR_AF=0.29;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3528;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27676925 rs6702341 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2499;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27679797 rs3813795 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.37;AMR_AF=0.45;AN=2;ASN_AF=0.26;AVGPOST=0.9955;ERATE=0.0031;EUR_AF=0.68;LDAF=0.4635;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.72 +1 27679954 rs1128918 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=0.9968;ERATE=0.0008;EUR_AF=0.38;LDAF=0.2442;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27680292 rs8533 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.63;AMR_AF=0.49;AN=2;ASN_AF=0.26;AVGPOST=0.9848;ERATE=0.0194;EUR_AF=0.71;LDAF=0.5361;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27682126 rs12742921 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.13;AN=2;ASN_AF=0.05;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.20;LDAF=0.1076;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27684396 rs4970520 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.09;AMR_AF=0.41;AN=2;ASN_AF=0.50;AVGPOST=0.9936;ERATE=0.0006;EUR_AF=0.20;LDAF=0.2892;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-1.07,-0.04,-5.00 +1 27686063 rs7521552 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9890;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 27687366 rs35733093 C G 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=0.9899;ERATE=0.0032;EUR_AF=0.38;LDAF=0.3303;RSQ=0.9830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27688551 rs41303775 T A 100 PASS AA=T;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.04;LDAF=0.0184;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27688633 rs1138294 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3273;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27696011 rs10218730 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9940;RSQ=0.9858;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 27875824 rs4908364 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9967;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 27876482 rs2076457 C A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.98;AMR_AF=0.74;AN=2;ASN_AF=0.82;AVGPOST=0.9844;ERATE=0.0006;EUR_AF=0.62;LDAF=0.7738;RSQ=0.9705;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 27995077 rs56015130 G T 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.43;AMR_AF=0.89;AN=2;ASN_AF=0.75;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.98;LDAF=0.7801;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +1 28209305 rs3766398 A G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.17;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9961;ERATE=0.0005;EUR_AF=0.63;LDAF=0.4754;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 28209362 rs3766399 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.18;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9954;ERATE=0.0016;EUR_AF=0.63;LDAF=0.4757;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 28209366 rs3766400 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.09;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9965;ERATE=0.0004;EUR_AF=0.63;LDAF=0.4560;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 28282206 rs3813804 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.26;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.28;LDAF=0.2391;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 28290231 rs4373781 C G 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.72;AMR_AF=0.89;AN=2;ASN_AF=0.73;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8302;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.93,-0.00 +1 28555426 rs567086 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.67;AMR_AF=0.34;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3702;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 28564252 rs8559 A G 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.74;AMR_AF=0.35;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3876;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 28733993 rs12091029 G T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.63;AMR_AF=0.33;AN=2;ASN_AF=0.09;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3446;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 28800380 rs61785974 C A 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.34;AMR_AF=0.28;AN=2;ASN_AF=0.09;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2561;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 28861636 rs2066726 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.33;AMR_AF=0.26;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2501;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 29016716 rs6678913 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=0.9863;ERATE=0.0257;EUR_AF=0.33;LDAF=0.3374;RSQ=0.9624;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.72,-0.00,-4.70 +1 29138975 rs1042114 G T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9963;ERATE=0.0005;EUR_AF=0.87;LDAF=0.9313;RSQ=0.9744;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.69,-0.10 +1 29189597 rs2234918 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.31;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.57;LDAF=0.5921;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +1 29313973 rs75060926 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.06;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0220;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 29320013 rs111642750 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0184;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 29475648 rs2230679 T G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.73;AMR_AF=0.78;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7404;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 29529699 rs1062924 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.80;AMR_AF=0.79;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7578;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.27,-0.00 +1 29542637 rs1128400 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.73;AMR_AF=0.77;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7381;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 29557224 rs2640466 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7192;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +1 29581937 rs16838065 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.33;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1625;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 29587363 rs115945321 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=0.9993;ERATE=0.0004;LDAF=0.0209;RSQ=0.9875;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 29630455 rs2295061 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.33;AMR_AF=0.30;AN=2;ASN_AF=0.66;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.16;LDAF=0.3540;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 29649874 rs10915252 T C 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.39;AMR_AF=0.40;AN=2;ASN_AF=0.57;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.38;LDAF=0.4374;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.53,-0.01 +1 29652068 rs2076618 T C 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.45;AMR_AF=0.40;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4524;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 31188901 rs20566 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.81;AMR_AF=0.65;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.47;LDAF=0.6101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31189194 rs116244983 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0008;EUR_AF=0.0013;LDAF=0.0302;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31206806 rs3795437 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.45;AMR_AF=0.31;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3827;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31215364 rs1050663 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.61;AMR_AF=0.66;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6092;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 31346057 rs3766284 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.04;AMR_AF=0.12;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1824;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31347320 rs2282440 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1796;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31413972 rs3795433 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.0041;AMR_AF=0.12;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1229;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31426815 rs2275741 A G 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.29;AMR_AF=0.45;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3624;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 31501755 rs4949331 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.27;AMR_AF=0.32;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2231;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 31740668 rs3753374 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.08;AMR_AF=0.50;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.61;LDAF=0.3584;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 31740706 rs3753373 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.27;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2647;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31897493 rs1320585 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.70;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9274;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.51,-0.01 +1 31897643 rs2275437 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.09;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1177;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31898132 rs4949400 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3584;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 31898162 rs4949401 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3592;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 31898234 rs4949402 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3953;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 31898279 rs4949403 A C 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3593;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 31899684 rs10454445 A T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9305;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 31899704 rs10454446 C T 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.36;AMR_AF=0.87;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7561;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 31905767 rs59550534 G C 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0896;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 31906882 rs11587589 A G 100 PASS AA=G;AC=1;AF=0.89;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.75;AVGPOST=0.9992;ERATE=0.0013;EUR_AF=0.98;LDAF=0.8858;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 32050459 rs149209488 C G 100 PASS AA=N;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9328;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +1 32084904 rs1056526 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.08;AMR_AF=0.48;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3551;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32092525 rs2271933 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.53;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.62;LDAF=0.4311;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32096265 rs1061770 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.08;AMR_AF=0.49;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.55;LDAF=0.3616;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32119431 rs3817398 T C 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.26;AMR_AF=0.50;AN=2;ASN_AF=0.22;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.55;LDAF=0.3914;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32127911 rs2271927 C T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.46;AN=2;ASN_AF=0.63;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.42;LDAF=0.5058;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 32127953 rs2271928 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.46;AN=2;ASN_AF=0.63;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5056;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 32128167 rs114016347 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0128;RSQ=0.9319;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.22 +1 32128283 rs1568396 C G 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.53;AMR_AF=0.47;AN=2;ASN_AF=0.63;AVGPOST=0.9119;ERATE=0.0103;EUR_AF=0.43;LDAF=0.5315;RSQ=0.8654;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.100:-0.48,-0.48,-0.48 +1 32131163 rs1356803 C G 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.07;AMR_AF=0.47;AN=2;ASN_AF=0.23;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.54;LDAF=0.3419;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32133737 rs2292988 C T 100 PASS AA=C;AC=1;AF=0.37;AFR_AF=0.11;AMR_AF=0.42;AN=2;ASN_AF=0.59;AVGPOST=0.9953;ERATE=0.0005;EUR_AF=0.35;LDAF=0.3690;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 32134491 rs2271929 C G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.53;AMR_AF=0.54;AN=2;ASN_AF=0.29;AVGPOST=0.9897;ERATE=0.0055;EUR_AF=0.62;LDAF=0.5009;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-4.00,-0.00,-5.00 +1 32136168 rs2292990 G C 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.32;AMR_AF=0.84;AN=2;ASN_AF=0.55;AVGPOST=0.8794;ERATE=0.0090;EUR_AF=0.94;LDAF=0.6753;RSQ=0.8477;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:1.950:-0.89,-0.39,-0.33 +1 32148571 rs10737358 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9985;RSQ=0.9107;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 32156869 rs10798884 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9985;RSQ=0.9405;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 32157009 rs2297679 G T 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.17;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1465;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32158374 rs3818788 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.75;AMR_AF=0.65;AN=2;ASN_AF=0.32;AVGPOST=0.9968;ERATE=0.0006;EUR_AF=0.64;LDAF=0.5841;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32164206 rs2228550 T G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.82;AMR_AF=0.61;AN=2;ASN_AF=0.30;AVGPOST=0.9979;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5900;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32165495 rs2228552 G T 100 PASS AA=g;AC=1;AF=0.43;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.24;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.65;LDAF=0.4297;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32193647 rs1127100 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.83;AMR_AF=0.56;AN=2;ASN_AF=0.29;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.65;LDAF=0.5811;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.00 +1 32196647 rs909001 C G 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.75;AMR_AF=0.26;AN=2;ASN_AF=0.18;AVGPOST=0.9949;ERATE=0.0009;EUR_AF=0.16;LDAF=0.3137;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32203163 rs2271931 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1043;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32203218 rs2271932 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.15;AN=2;ASN_AF=0.08;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0784;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32207581 rs2297600 T G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.76;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9818;ERATE=0.0151;EUR_AF=0.18;LDAF=0.3420;RSQ=0.9755;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32221913 rs4949223 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.10;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1028;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 32266026 rs552124 A G 100 PASS AA=a;AC=2;AF=0.68;AFR_AF=0.81;AMR_AF=0.70;AN=2;ASN_AF=0.52;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.72;LDAF=0.6810;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0104;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.54,-0.00 +1 32280610 rs6664445 T C 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.68;AMR_AF=0.63;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6755;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 33065947 rs704886 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0146;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 33133968 rs2762904 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 33134774 rs359955 A C 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.25;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6349;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 33134989 rs359956 A G 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8126;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 33138516 rs607202 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 33235626 rs3737995 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.05;AMR_AF=0.40;AN=2;ASN_AF=0.45;AVGPOST=0.9737;ERATE=0.0007;EUR_AF=0.37;LDAF=0.3238;RSQ=0.9570;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 33318634 rs785274 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 33330432 rs1284368 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +1 33478931 rs80324279 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.33;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=0.9953;ERATE=0.0390;EUR_AF=0.27;LDAF=0.2635;RSQ=0.9860;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 33478959 rs72884305 C G 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.34;AMR_AF=0.28;AN=2;ASN_AF=0.19;AVGPOST=0.9926;ERATE=0.0394;EUR_AF=0.27;LDAF=0.2655;RSQ=0.9781;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 33547930 rs149817424 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0174;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 33560338 rs804428 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9785;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 33625275 rs35622844 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9953;ERATE=0.0006;EUR_AF=0.05;LDAF=0.0256;RSQ=0.9234;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 33631069 rs2306257 C A 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.20;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1860;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 33646950 rs622407 A G 100 PASS AA=a;AC=1;AF=0.77;AFR_AF=0.73;AMR_AF=0.81;AN=2;ASN_AF=0.78;AVGPOST=0.9953;ERATE=0.0008;EUR_AF=0.75;LDAF=0.7634;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.37,-0.24,-2.94 +1 33741787 rs12743549 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1669;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 33760743 rs4641276 T C 100 PASS AA=C;AC=1;AF=0.82;AFR_AF=0.95;AMR_AF=0.83;AN=2;ASN_AF=0.76;AVGPOST=0.9979;ERATE=0.0065;EUR_AF=0.77;LDAF=0.8152;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 33790496 rs11554674 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1727;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 33799900 rs12734630 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1688;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 33820134 rs12026290 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.1687;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 33832865 rs6425816 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.87;AMR_AF=0.54;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7070;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 33957130 rs3795419 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1842;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 33957152 rs4403594 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.8253;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 33960062 rs9943259 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.83;AMR_AF=0.65;AN=2;ASN_AF=0.75;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7492;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 34008297 rs1000418 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2295;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 34038214 rs2641962 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.57;AMR_AF=0.60;AN=2;ASN_AF=0.40;AVGPOST=0.9997;ERATE=0.0013;EUR_AF=0.48;LDAF=0.5015;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 34071434 rs1874044 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.35;AMR_AF=0.66;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5393;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +1 34071525 rs1874045 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.34;AMR_AF=0.65;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5356;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 34158518 rs201576687 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8999;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.900:-5.00,0.00,-5.00 +1 34189888 rs61743144 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0284;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 34189917 rs519370 C T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.76;AMR_AF=0.77;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0005;EUR_AF=0.65;LDAF=0.7875;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 34238283 rs474474 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.48;AMR_AF=0.27;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.24;LDAF=0.3116;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 34285342 rs17342512 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.56;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5827;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 34285381 rs11578857 C T 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.56;AMR_AF=0.62;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5832;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 35259961 rs1764390 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.83;AMR_AF=0.57;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6375;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 35561510 rs2101973 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.26;AMR_AF=0.68;AN=2;ASN_AF=0.34;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.90;LDAF=0.5739;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 35562965 rs2971408 G A 100 PASS AA=A;AC=1;AF=0.83;AFR_AF=0.83;AMR_AF=0.80;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8332;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 35563206 rs6658571 C G 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.35;AMR_AF=0.70;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.90;LDAF=0.5992;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 35652770 rs3738697 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0626;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 35654765 rs2088481 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.62;AMR_AF=0.31;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.3844;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 35654777 rs2088482 G A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.63;AMR_AF=0.31;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.3867;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 35656064 rs11264114 T A 100 PASS AA=A;AC=2;AF=0.39;AFR_AF=0.65;AMR_AF=0.32;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.3934;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 35851640 rs16837315 A G 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.07;AMR_AF=0.19;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.1874;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 35900615 rs3814302 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.73;AMR_AF=0.33;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.4424;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 35900725 rs10157108 A C 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.33;AMR_AF=0.11;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.1535;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 35909937 rs201544013 A G 100 PASS AA=A;AC=1;AF=0.0014;AMR_AF=0.0028;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 35925861 rs2819002 C A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9785;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 35928178 rs200651359 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36029343 rs12094935 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.34;AMR_AF=0.11;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.1567;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 36039962 rs2301902 T G 100 PASS AA=G;AC=2;AF=0.22;AFR_AF=0.23;AMR_AF=0.21;AN=2;ASN_AF=0.49;AVGPOST=0.9589;ERATE=0.0036;EUR_AF=0.03;LDAF=0.2298;RSQ=0.9223;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.06,-0.47,-0.18 +1 36205166 rs577483 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.24;AMR_AF=0.59;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.5101;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 36213712 rs516992 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9730;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 36216835 rs535638 C T 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.24;AMR_AF=0.59;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.5101;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 36225948 rs7537203 T C 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.64;AMR_AF=0.40;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.4616;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36297638 rs143868810 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36316571 rs4652895 A C 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.15;AMR_AF=0.57;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.4803;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36359669 rs2296470 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.38;AMR_AF=0.28;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.01;LDAF=0.3222;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 36367780 rs595961 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.88;AMR_AF=0.44;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.14;LDAF=0.5312;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 36385061 rs4142288 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.25;AN=2;ASN_AF=0.71;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.2590;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.80,-0.00,-5.00 +1 36553673 rs399393 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.89;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9330;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 36557619 rs2236387 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.29;AMR_AF=0.23;AN=2;ASN_AF=0.28;AVGPOST=0.9986;ERATE=0.0014;EUR_AF=0.01;LDAF=0.1797;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 36563158 rs3738360 C A 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.44;AMR_AF=0.65;AN=2;ASN_AF=0.49;AVGPOST=0.9968;ERATE=0.0007;EUR_AF=0.90;LDAF=0.6493;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36563797 rs35495320 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.50;AVGPOST=0.9946;ERATE=0.0007;EUR_AF=0.01;LDAF=0.2103;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-1.82,-0.01,-5.00 +1 36565617 rs274754 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.37;AMR_AF=0.56;AN=2;ASN_AF=0.24;AVGPOST=0.9983;ERATE=0.0021;EUR_AF=0.76;LDAF=0.5043;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36565739 rs57985157 C T 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.03;AMR_AF=0.19;AN=2;ASN_AF=0.27;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1110;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.92 +1 36602943 rs2231318 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.86;AMR_AF=0.83;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7729;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 36638206 rs148608573 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.12;AN=2;ASN_AF=0.01;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0226;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36642420 rs475591 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.89;AMR_AF=0.75;AN=2;ASN_AF=0.91;AVGPOST=0.9947;ERATE=0.0008;EUR_AF=0.57;LDAF=0.7578;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.60,-0.01 +1 36752433 rs6425977 C T 100 PASS AA=C;AC=2;AF=0.82;AFR_AF=0.53;AMR_AF=0.83;AN=2;ASN_AF=0.96;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8180;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.02,-0.00 +1 36762396 rs1566589 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9365;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 36788356 rs7536394 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.91;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9955;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9712;RSQ=0.9467;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.17,-0.48,-0.18 +1 36807481 rs3795498 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.16;AMR_AF=0.15;AN=2;ASN_AF=0.12;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.23;LDAF=0.1728;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36921371 rs1538634 G T 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.38;AN=2;ASN_AF=0.31;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2668;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 36923494 rs12023818 G C 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2016;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 36927733 rs111308179 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9689;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 36937059 rs3917981 A G 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.67;AMR_AF=0.46;AN=2;ASN_AF=0.40;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5299;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 36937065 rs3917980 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.24;AN=2;ASN_AF=0.10;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2145;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 37324683 rs3738081 A C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.62;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2912;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 37325477 rs6691840 A C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.59;AMR_AF=0.27;AN=2;ASN_AF=0.03;AVGPOST=0.9983;ERATE=0.0025;EUR_AF=0.30;LDAF=0.2919;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38006359 rs2174769 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.43;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7838;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38023316 rs11749 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2395;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38049552 rs6426024 C G 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.45;AMR_AF=0.83;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7892;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38078630 rs55852308 A T 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.23;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2299;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38082122 rs12039431 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.29;AVGPOST=0.9893;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2005;RSQ=0.9779;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38082123 rs12046650 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.29;AVGPOST=0.9897;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2003;RSQ=0.9782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38148765 rs684260 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.83;AMR_AF=0.80;AN=2;ASN_AF=0.94;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8299;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38185169 rs35909785 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.13;AMR_AF=0.06;AN=2;ASN_AF=0.21;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0977;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38327982 rs3843 G T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.34;AMR_AF=0.59;AN=2;ASN_AF=0.52;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5681;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38329999 rs41311191 C G 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.11;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0736;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38338557 rs202244300 G T 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.14;AMR_AF=0.21;AN=2;ASN_AF=0.19;AVGPOST=0.9424;ERATE=0.1124;EUR_AF=0.15;LDAF=0.1890;RSQ=0.8302;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38338795 rs11488569 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.34;AMR_AF=0.59;AN=2;ASN_AF=0.51;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.74;LDAF=0.5664;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38345896 rs2306427 A C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.34;AMR_AF=0.59;AN=2;ASN_AF=0.51;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.74;LDAF=0.5652;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38348506 rs41307896 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.02;AMR_AF=0.11;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0731;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38423853 rs9293 G C 100 PASS AA=G;AC=1;AF=0.93;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9291;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38425895 rs28675056 T C 100 PASS AA=C;AC=1;AF=0.93;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9287;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38442547 rs10890216 G A 100 PASS AA=G;AC=1;AF=0.93;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9292;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38444749 rs7555461 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.41;AMR_AF=0.50;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4863;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38449910 rs11210870 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.36;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2783;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38450367 rs6680796 A G 100 PASS AA=a;AC=1;AF=0.93;AFR_AF=0.97;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9292;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 38463504 rs7366048 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.68;AMR_AF=0.51;AN=2;ASN_AF=0.64;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.41;LDAF=0.5463;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 38464639 rs4570384 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0096;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 39325063 rs1925678 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.15;AMR_AF=0.60;AN=2;ASN_AF=0.42;AVGPOST=0.9883;ERATE=0.0012;EUR_AF=0.67;LDAF=0.4758;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.47 +1 39340282 rs880303 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3460;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 39352271 rs2147914 G T 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.29;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3450;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 39361615 rs9438984 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.15;AMR_AF=0.47;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3455;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 39748921 rs2275188 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.26;AMR_AF=0.67;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5956;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 39763242 rs2275187 G A 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.26;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.74;LDAF=0.5855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 39766041 rs41270803 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1513;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39766055 rs2275186 C T 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.26;AMR_AF=0.67;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.74;LDAF=0.5998;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 39797055 rs16826069 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1822;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39801815 rs41270807 A C 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1472;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39806610 rs3116396 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.89;AMR_AF=0.98;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9570;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 39812620 rs2490944 G T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9552;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 39812822 rs2761764 C A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.98;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9552;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 39815143 rs16826093 T A 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1476;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39815344 rs41270811 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1473;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39835817 rs2296172 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1471;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39889677 rs663892 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.74;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.4008;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39893093 rs625384 C T 100 PASS AA=-;AC=1;AF=0.35;AFR_AF=0.53;AMR_AF=0.32;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3496;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39895460 rs683135 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.74;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.27;LDAF=0.4013;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39908506 rs587404 G A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.53;AMR_AF=0.32;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3528;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39913351 rs2296173 A G 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.21;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1486;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39914363 rs668556 G C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.80;AMR_AF=0.51;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5444;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 39927507 rs783820 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9552;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 39929240 rs7554206 T C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.50;AMR_AF=0.68;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6596;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 39977575 rs200415763 C T 100 PASS AA=N;AC=2;AF=0.68;AFR_AF=0.53;AMR_AF=0.74;AN=2;ASN_AF=0.68;AVGPOST=0.7067;ERATE=0.0503;EUR_AF=0.75;LDAF=0.6397;RSQ=0.4083;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:1.850:-0.48,-0.48,-0.48 +1 39987190 rs115627781 A G 100 PASS AA=N;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.26;AVGPOST=0.7626;ERATE=0.0474;EUR_AF=0.17;LDAF=0.2533;RSQ=0.5171;SNPSOURCE=LOWCOV,EXOME;THETA=0.0132;VT=SNP GT:DS:GL 1|0:0.800:-0.48,-0.48,-0.48 +1 39987201 rs144103941 G C 100 PASS AA=N;AC=1;AF=0.10;AFR_AF=0.09;AMR_AF=0.09;AN=2;ASN_AF=0.17;AVGPOST=0.8237;ERATE=0.0177;EUR_AF=0.06;LDAF=0.1582;RSQ=0.4864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:0.650:-0.48,-0.48,-0.48 +1 39988084 rs6525 G A 100 PASS AA=N;AC=1;AF=0.33;AFR_AF=0.13;AMR_AF=0.40;AN=2;ASN_AF=0.40;AVGPOST=0.8878;ERATE=0.0388;EUR_AF=0.38;LDAF=0.3335;RSQ=0.8322;SNPSOURCE=EXOME;THETA=0.0082;VT=SNP GT:DS:GL 1|0:1.000:-3.66,-0.00,-5.00 +1 40098328 rs784625 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9945;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40129066 rs4660340 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0041;AMR_AF=0.03;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.05;LDAF=0.0516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 40137754 rs2871601 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.26;AMR_AF=0.22;AN=2;ASN_AF=0.38;AVGPOST=0.9937;ERATE=0.0007;EUR_AF=0.20;LDAF=0.2609;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.28 +1 40149642 rs784634 G T 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.90;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8393;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 40149870 rs113763288 C G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.91;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8407;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.79 +1 40229368 rs2463260 A G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.26;AMR_AF=0.37;AN=2;ASN_AF=0.34;AVGPOST=0.9117;ERATE=0.0611;EUR_AF=0.43;LDAF=0.3610;RSQ=0.8615;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-2.42,-0.00,-3.55 +1 40230336 rs76376226 C G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.34;AMR_AF=0.31;AN=2;ASN_AF=0.36;AVGPOST=0.9486;ERATE=0.0978;EUR_AF=0.33;LDAF=0.3468;RSQ=0.8662;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-2.61,-0.00,-2.69 +1 40230531 rs115705483 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.11;AN=2;ASN_AF=0.15;AVGPOST=0.9670;ERATE=0.0143;EUR_AF=0.13;LDAF=0.1153;RSQ=0.8628;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|0:0.900:-2.05,-0.02,-1.60 +1 40236074 rs230321 A C 100 PASS AA=c;AC=1;AF=0.22;AFR_AF=0.34;AMR_AF=0.23;AN=2;ASN_AF=0.11;AVGPOST=0.9750;ERATE=0.0355;EUR_AF=0.22;LDAF=0.2195;RSQ=0.9529;SNPSOURCE=EXOME;THETA=0.0040;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 40363054 rs3134614 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0021;EUR_AF=0.89;LDAF=0.9447;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40533266 rs11207440 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40533287 rs6665926 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9993;RSQ=0.3591;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40533315 rs6665933 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40533320 rs6665936 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9990;RSQ=0.4352;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40533326 rs6665937 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9987;RSQ=0.5709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40533347 rs6665944 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0698;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40546209 rs77623018 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0804;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 40705726 rs10889205 A T 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.22;AMR_AF=0.13;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1549;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 40737516 rs6677717 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9898;RSQ=0.9855;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40773149 rs2228564 T C 100 PASS AA=.;AC=2;AF=0.38;AFR_AF=0.42;AMR_AF=0.35;AN=2;ASN_AF=0.60;AVGPOST=0.9952;ERATE=0.0063;EUR_AF=0.22;LDAF=0.3842;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 40776752 rs3737815 C A 100 PASS AA=.;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.22;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2199;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 40777792 rs11207843 G A 100 PASS AA=.;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0499;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 40777800 rs1979785 T G 100 PASS AA=.;AC=2;AF=0.41;AFR_AF=0.39;AMR_AF=0.36;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.4066;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.68,-0.00 +1 40778377 rs1983658 C T 100 PASS AA=.;AC=2;AF=0.38;AFR_AF=0.34;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.22;LDAF=0.3843;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.16,-0.03 +1 40879808 rs209605 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9970;ERATE=0.0038;EUR_AF=0.91;LDAF=0.9472;RSQ=0.9808;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 40881041 rs209606 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9388;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 41101572 rs2253835 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.92;AMR_AF=0.71;AN=2;ASN_AF=0.52;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.79;LDAF=0.7361;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 41107360 rs491619 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.92;AMR_AF=0.69;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7285;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 41107612 rs2076332 C G 100 PASS AA=C;AC=2;AF=0.22;AFR_AF=0.22;AMR_AF=0.26;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2212;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 41204569 rs1057925 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.39;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0009;EUR_AF=0.57;LDAF=0.5010;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 41282919 rs13374844 C T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.15;LDAF=0.2024;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41282921 rs13374845 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2011;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41284366 rs2361660 G C 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.56;AMR_AF=0.58;AN=2;ASN_AF=0.44;AVGPOST=0.9925;ERATE=0.0008;EUR_AF=0.69;LDAF=0.5745;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.81 +1 41285087 rs4660468 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.52;AMR_AF=0.58;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0011;EUR_AF=0.68;LDAF=0.5628;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41285585 rs12117176 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1160;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41285591 rs12143503 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1174;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41298652 rs913378 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.84;AVGPOST=0.9884;ERATE=0.0063;EUR_AF=0.66;LDAF=0.7123;RSQ=0.9804;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 41300682 rs55925184 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0274;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 41327407 rs116373577 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.13;AMR_AF=0.31;AN=2;ASN_AF=0.51;AVGPOST=0.9831;ERATE=0.0012;EUR_AF=0.08;LDAF=0.2447;RSQ=0.9683;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +1 41466803 rs12718433 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3633;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41474400 rs35044078 C G 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1545;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41475085 rs12144160 A G 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.24;AMR_AF=0.62;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.4936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41494222 rs11578697 G T 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.17;AMR_AF=0.58;AN=2;ASN_AF=0.56;AVGPOST=0.9991;ERATE=0.0051;EUR_AF=0.46;LDAF=0.4407;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 41540853 rs2011981 A T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.98;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8862;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 41540861 rs2011982 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.99;AMR_AF=0.83;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8884;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 41950312 rs2984691 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.84;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9240;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.07,-0.00 +1 41976328 rs9439043 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9946;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9674;RSQ=0.9325;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.74,-0.09 +1 41978566 rs2991344 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9964;RSQ=0.9324;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +1 41978825 rs2483689 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9652;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 41979156 rs615177 A G 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.65;AMR_AF=0.71;AN=2;ASN_AF=0.99;AVGPOST=0.9856;ERATE=0.0004;EUR_AF=0.59;LDAF=0.7282;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.27,-0.00 +1 42046812 rs2810565 C T 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 42047300 rs41269473 A T 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.03;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0356;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 42048745 rs2810566 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 42049032 rs2984694 G A 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9597;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 42049140 rs2475842 C G 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9598;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 42050366 rs2146315 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.30;AMR_AF=0.22;AN=2;ASN_AF=0.41;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2918;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 42619152 rs2297567 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.07;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.18;LDAF=0.1408;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 42629040 rs2232224 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9324;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +1 42630364 rs2071499 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.09;AMR_AF=0.63;AN=2;ASN_AF=0.44;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4575;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-0.01,-1.68,-5.00 +1 42654364 rs554500 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.31;AMR_AF=0.14;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2413;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 42693597 rs343376 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.78;AMR_AF=0.91;AN=2;ASN_AF=0.86;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8270;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 42846786 rs11210626 G C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.62;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9399;ERATE=0.0064;EUR_AF=0.63;LDAF=0.5512;RSQ=0.9075;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-0.35,-0.41,-0.78 +1 42880516 rs1055055 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.48;AMR_AF=0.57;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5215;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0066;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 42898843 rs1034268 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.60;AMR_AF=0.66;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6353;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43124859 rs3738494 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.69;AMR_AF=0.59;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.6120;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 43131653 rs12244 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 43159152 rs144302481 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0093;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43201534 rs4660658 G A 100 PASS AA=g;AC=2;AF=0.19;AFR_AF=0.23;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=0.9978;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1920;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.64,-0.01 +1 43201614 rs9660973 C T 100 PASS AA=c;AC=1;AF=0.04;AFR_AF=0.10;AMR_AF=0.05;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0448;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.09 +1 43212926 rs67014447 G A 100 PASS AA=-;AC=1;AF=0.05;AFR_AF=0.12;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0512;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 43213499 rs3738499 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.33;AMR_AF=0.59;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5454;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43223489 rs6700677 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.10;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0444;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 43228189 rs2816593 T A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9904;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 43232504 rs55716016 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.06;AMR_AF=0.03;AN=2;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0276;RSQ=0.9897;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.97 +1 43300663 rs112744081 T C 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.55;AMR_AF=0.70;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5975;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43395635 rs2229682 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.06;AMR_AF=0.21;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0028;EUR_AF=0.20;LDAF=0.1398;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43396414 rs11537641 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.22;AN=2;ASN_AF=0.10;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1556;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43408966 rs1385129 G A 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.17;AMR_AF=0.28;AN=2;ASN_AF=0.28;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2397;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 43652369 rs6413971 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9954;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 43663376 rs513009 A G 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.54;AMR_AF=0.78;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7578;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 43672636 rs11210812 T G 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.70;AVGPOST=0.9955;ERATE=0.0050;EUR_AF=0.54;LDAF=0.4877;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 43675467 rs2453412 G A 100 PASS AA=g;AC=2;AF=0.73;AFR_AF=0.53;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 43777852 rs1999595 C T 100 PASS AA=T;AC=2;AF=0.82;AFR_AF=0.76;AMR_AF=0.86;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0010;EUR_AF=0.86;LDAF=0.8242;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 43779564 rs3120276 T C 100 PASS AA=C;AC=1;AF=0.75;AFR_AF=0.88;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7460;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 43782846 rs1198982 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.88;AMR_AF=0.64;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7418;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 43784956 rs1199039 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.20;AMR_AF=0.37;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2843;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43812075 rs1760670 G A 100 PASS AA=g;AC=1;AF=0.27;AFR_AF=0.21;AMR_AF=0.38;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2660;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43825644 rs839763 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.27;AMR_AF=0.38;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2851;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43826312 rs710251 C A 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.49;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.63;LDAF=0.6321;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43869235 rs710249 G C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.25;AMR_AF=0.42;AN=2;ASN_AF=0.11;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3029;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43901011 rs2039531 A C 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.13;AMR_AF=0.41;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2652;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43903239 rs138347651 G A 100 PASS AA=G;AC=1;AF=0.0023;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.0026;LDAF=0.0024;RSQ=0.9595;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43903589 rs2782648 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2756;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43906896 rs2027130 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.10;AMR_AF=0.41;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2601;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43909265 rs2255632 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.43;AN=2;ASN_AF=0.15;AVGPOST=0.9986;ERATE=0.0081;EUR_AF=0.43;LDAF=0.2925;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 43912590 rs2782650 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.2755;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44035352 rs1065771 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.04;AMR_AF=0.25;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.32;LDAF=0.2361;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44035472 rs943513 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.33;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3204;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44044468 rs11210874 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.26;AN=2;ASN_AF=0.35;AVGPOST=0.9990;ERATE=0.0037;EUR_AF=0.32;LDAF=0.2698;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44057042 rs3748796 A G 100 PASS AA=A;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.0026;LDAF=0.0046;RSQ=0.8786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-3.38 +1 44057257 rs2304353 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.42;AVGPOST=0.9989;ERATE=0.0005;EUR_AF=0.33;LDAF=0.2837;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.95 +1 44057668 rs7540068 G T 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.26;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2834;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44058265 rs3828151 C A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.40;AMR_AF=0.34;AN=2;ASN_AF=0.51;AVGPOST=0.9974;ERATE=0.0011;EUR_AF=0.40;LDAF=0.4174;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44070691 rs17371903 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.09;AMR_AF=0.30;AN=2;ASN_AF=0.26;AVGPOST=0.9991;ERATE=0.0031;EUR_AF=0.36;LDAF=0.2657;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44071221 rs631248 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.41;AMR_AF=0.62;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.75;LDAF=0.6504;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0150;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44072018 rs1065772 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=0.9985;ERATE=0.0038;EUR_AF=0.35;LDAF=0.2879;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44072066 rs10890266 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.04;AMR_AF=0.31;AN=2;ASN_AF=0.40;AVGPOST=0.9990;ERATE=0.0017;EUR_AF=0.36;LDAF=0.2914;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44079411 rs603542 T C 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.21;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5365;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44083110 rs571862 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.93;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7660;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44083507 rs641365 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.93;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7655;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44083519 rs641351 G A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.93;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7655;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44084739 rs1143701 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.93;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7661;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44086080 rs568639 T C 100 PASS AA=t;AC=2;AF=0.77;AFR_AF=0.93;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7670;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44086831 rs1143702 C T 100 PASS AA=c;AC=2;AF=0.58;AFR_AF=0.55;AMR_AF=0.55;AN=2;ASN_AF=0.62;AVGPOST=0.9884;ERATE=0.0194;EUR_AF=0.59;LDAF=0.5858;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44137257 rs586339 C A 100 PASS AA=A;AC=2;AF=0.76;AFR_AF=0.93;AMR_AF=0.64;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7632;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44365315 rs201204481 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44386615 rs3120803 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.66;AMR_AF=0.86;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.70,-0.00 +1 44386642 rs3764833 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.03;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0768;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.36 +1 44395786 rs2108202 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.16;AMR_AF=0.67;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.76;LDAF=0.5585;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44401384 rs2242637 A G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.76;AMR_AF=0.87;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8322;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.35,-0.00 +1 44415415 rs2240447 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.11;AMR_AF=0.66;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5518;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44415424 rs41270385 A G 100 PASS AA=A;AC=1;AF=0.05;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0507;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44426025 rs2301993 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.23;AMR_AF=0.67;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5805;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44426823 rs2301992 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0972;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44426948 rs2906596 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.67;AMR_AF=0.83;AN=2;ASN_AF=0.76;AVGPOST=0.9852;ERATE=0.0239;EUR_AF=0.89;LDAF=0.7934;RSQ=0.9662;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44432500 rs4660759 C G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.24;AMR_AF=0.68;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5858;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44440769 rs2286241 G C 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.05;AMR_AF=0.05;AN=2;ASN_AF=0.18;AVGPOST=0.9930;ERATE=0.0011;EUR_AF=0.06;LDAF=0.0869;RSQ=0.9667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-2.33,-0.01,-1.66 +1 44441533 rs2286243 A G 100 PASS AA=A;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.05;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0891;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44442521 rs12410334 A C 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.12;AMR_AF=0.69;AN=2;ASN_AF=0.71;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.6069;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 44447413 rs1859728 G C 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.04;AMR_AF=0.05;AN=2;ASN_AF=0.17;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0807;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44451234 rs1061781 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.06;AMR_AF=0.08;AN=2;ASN_AF=0.14;AVGPOST=0.9987;ERATE=0.0060;EUR_AF=0.10;LDAF=0.0990;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44461822 rs2301983 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.11;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0542;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44463204 rs2286245 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.04;AN=2;ASN_AF=0.11;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0548;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44595113 rs2429051 G C 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.23;AMR_AF=0.54;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5489;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44595410 rs2485652 A G 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3190;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44595426 rs2429050 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.10;AMR_AF=0.29;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3186;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 44679556 rs803369 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.91;AMR_AF=0.72;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6682;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44685677 rs147610607 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0188;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 44686322 rs12419 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.31;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2477;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 45205598 rs3820586 T C 100 PASS AA=N;AC=1;AF=0.26;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2564;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45218895 rs3795713 A T 100 PASS AA=a;AC=1;AF=0.26;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2569;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45224998 rs4342887 A C 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.19;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1947;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45226084 rs1140279 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1805;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45266832 rs17881698 A G 100 PASS AA=a;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1828;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45270024 rs11211036 G C 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1833;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45271097 rs17883049 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1829;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45271912 rs17886118 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.26;AVGPOST=0.9825;ERATE=0.0008;EUR_AF=0.16;LDAF=0.1800;RSQ=0.9588;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.17,-0.49,-2.81 +1 45291908 rs11211040 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1860;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45293518 rs7525308 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.58;AMR_AF=0.39;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4327;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45293752 rs2295997 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.20;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1997;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45294156 rs2273940 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.57;AMR_AF=0.39;AN=2;ASN_AF=0.49;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.31;LDAF=0.4296;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45296752 rs2295998 C T 100 PASS AA=c;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=0.9996;ERATE=0.0011;EUR_AF=0.15;LDAF=0.1933;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45297753 rs2295999 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.44;AMR_AF=0.22;AN=2;ASN_AF=0.27;AVGPOST=0.9989;ERATE=0.0021;EUR_AF=0.15;LDAF=0.2566;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45307506 rs3795720 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.34;AMR_AF=0.42;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3657;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 45362992 rs263978 T C 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.94;AMR_AF=0.71;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.7656;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 45444038 rs11556200 G A 100 PASS AA=a;AC=1;AF=0.28;AFR_AF=0.39;AMR_AF=0.35;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2838;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 45473316 rs4660830 C T 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.64;AMR_AF=0.59;AN=2;ASN_AF=0.61;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6493;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45474008 rs7541207 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.27;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.22;LDAF=0.2394;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 45476663 rs2298005 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.17;AMR_AF=0.34;AN=2;ASN_AF=0.27;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.22;LDAF=0.2433;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.38 +1 45479772 rs11211066 G T 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2386;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 45486272 rs998418 T C 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.50;AMR_AF=0.63;AN=2;ASN_AF=0.72;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.78;LDAF=0.6736;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45504720 rs7551698 G C 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.39;AMR_AF=0.49;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5201;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 45796269 rs3219493 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9255;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.85,-0.00 +1 45797505 rs3219489 C G 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.25;AMR_AF=0.41;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0008;EUR_AF=0.24;LDAF=0.3190;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.23,-0.03 +1 45798555 rs3219487 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=0.89;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9291;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 45973928 rs2275276 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.39;AMR_AF=0.53;AN=2;ASN_AF=0.58;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4897;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 45981512 rs2356559 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.86;AMR_AF=0.81;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8021;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 46073489 rs2230657 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.68;AMR_AF=0.56;AN=2;ASN_AF=0.62;AVGPOST=0.9980;ERATE=0.0019;EUR_AF=0.47;LDAF=0.5711;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +1 46078854 rs2230658 A G 100 PASS AA=A;AC=2;AF=0.69;AFR_AF=0.73;AMR_AF=0.69;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6915;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 46078884 rs2230659 C T 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.71;AMR_AF=0.67;AN=2;ASN_AF=0.64;AVGPOST=0.9975;ERATE=0.0078;EUR_AF=0.70;LDAF=0.6807;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 46080947 rs1972410 A C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.73;AMR_AF=0.69;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7057;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 46081960 rs2253862 C T 100 PASS AA=T;AC=2;AF=0.70;AFR_AF=0.73;AMR_AF=0.69;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7025;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 46476587 rs11211247 T G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8574;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 46493460 rs1707336 T G 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.40;AMR_AF=0.47;AN=2;ASN_AF=0.60;AVGPOST=0.9802;ERATE=0.0256;EUR_AF=0.40;LDAF=0.4617;RSQ=0.9697;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 46494627 rs185347733 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9993;ERATE=0.0003;LDAF=0.0086;RSQ=0.9632;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 46496709 rs925524 A G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.59;AMR_AF=0.67;AN=2;ASN_AF=0.69;AVGPOST=0.9929;ERATE=0.0025;EUR_AF=0.74;LDAF=0.6806;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 46498375 rs1622208 A G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7162;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 46521517 rs785468 G A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.73;LDAF=0.6769;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 46521559 rs785467 A T 100 PASS AA=T;AC=1;AF=0.71;AFR_AF=0.74;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7088;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 46655158 rs6659553 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9521;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 46659104 rs7527668 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.35;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.3240;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 46660295 rs2292487 T C 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.34;AMR_AF=0.34;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2994;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 46810530 rs3737744 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.16;AMR_AF=0.40;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3547;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 46810797 rs138645617 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0069;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 46827214 rs324414 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9945;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 46870761 rs324420 C A 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.37;AMR_AF=0.28;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2482;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 46871986 rs324419 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.87;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.87;LDAF=0.9112;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 46976837 rs1886116 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.33;AN=2;ASN_AF=0.02;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2097;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 47013364 rs1258041 T C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=0.72;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.99;LDAF=0.9188;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-3.14,-0.48,-0.18 +1 47078637 rs4660947 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.55;AMR_AF=0.56;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.49;LDAF=0.6357;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 47080679 rs6671527 G A 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.55;AMR_AF=0.53;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.6161;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 47108828 rs736188 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.55;AMR_AF=0.93;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7720;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 47133811 rs11211337 T C 100 PASS AA=c;AC=2;AF=0.85;AFR_AF=0.87;AMR_AF=0.88;AN=2;ASN_AF=0.92;AVGPOST=0.9843;ERATE=0.0013;EUR_AF=0.77;LDAF=0.8417;RSQ=0.9525;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-3.05,-0.47,-0.18 +1 47144083 rs9094 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.05;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1549;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 47279175 rs4646487 C T 100 PASS AA=C;AC=2;AF=0.15;AFR_AF=0.19;AMR_AF=0.11;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1536;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 47284526 rs3766196 C A 100 PASS AA=C;AC=2;AF=0.11;AFR_AF=0.04;AMR_AF=0.10;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1143;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 47398496 rs1126742 A G 100 PASS AA=N;AC=2;AF=0.17;AFR_AF=0.23;AMR_AF=0.13;AN=2;ASN_AF=0.20;AVGPOST=0.9878;ERATE=0.0256;EUR_AF=0.14;LDAF=0.1724;RSQ=0.9705;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-2.09,-0.00 +1 47399967 rs28451040 G A 100 PASS AA=-;AC=2;AF=0.38;AFR_AF=0.50;AMR_AF=0.31;AN=2;ASN_AF=0.51;AVGPOST=0.9297;ERATE=0.0264;EUR_AF=0.24;LDAF=0.3852;RSQ=0.8851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:1.950:-4.70,-0.62,-0.12 +1 47400059 rs71500102 A G 100 PASS AA=-;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9667;ERATE=0.0074;EUR_AF=1.00;LDAF=0.9435;RSQ=0.8234;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-3.11,-0.47,-0.18 +1 47547972 rs1502924 C G 100 PASS AA=-;AC=2;AF=0.11;AFR_AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.21;AVGPOST=0.9789;ERATE=0.0098;EUR_AF=0.09;LDAF=0.1185;RSQ=0.9331;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.38,-0.02 +1 47571902 rs4926802 C T 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.51;AMR_AF=0.39;AN=2;ASN_AF=0.93;AVGPOST=0.9877;ERATE=0.0012;EUR_AF=0.31;LDAF=0.5286;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.49,-0.00 +1 47571905 rs28463559 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.45;AMR_AF=0.38;AN=2;ASN_AF=0.90;AVGPOST=0.9798;ERATE=0.0039;EUR_AF=0.31;LDAF=0.5046;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.53,-0.00 +1 47582292 rs10890465 T G 100 PASS AA=t;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.42;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.34;LDAF=0.5657;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.70,-0.10 +1 47583415 rs6664496 G T 100 PASS AA=t;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.42;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5658;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.88,-0.00 +1 47607281 rs12564525 C T 100 PASS AA=t;AC=2;AF=0.31;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.60;AVGPOST=0.9895;ERATE=0.0119;EUR_AF=0.19;LDAF=0.3103;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.90,-0.01 +1 47607762 rs2056901 T C 100 PASS AA=N;AC=2;AF=0.30;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3007;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 47607785 rs2056900 G A 100 PASS AA=g;AC=2;AF=0.29;AFR_AF=0.20;AMR_AF=0.24;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2930;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 47607851 rs2056899 A T 100 PASS AA=t;AC=2;AF=0.68;AFR_AF=0.91;AMR_AF=0.46;AN=2;ASN_AF=0.99;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.40;LDAF=0.6790;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.68,-0.01 +1 47608983 rs113777592 G T 100 PASS AA=g;AC=2;AF=0.28;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.52;AVGPOST=0.9910;ERATE=0.0038;EUR_AF=0.18;LDAF=0.2795;RSQ=0.9839;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.900:-5.00,-0.61,-0.12 +1 47609489 rs10789501 T C 100 PASS AA=N;AC=2;AF=0.54;AFR_AF=0.49;AMR_AF=0.42;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.34;LDAF=0.5437;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 47610065 rs149718343 A C 100 PASS AA=a;AC=2;AF=0.12;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.29;AVGPOST=0.9969;ERATE=0.0020;EUR_AF=0.07;LDAF=0.1186;RSQ=0.9883;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.90,-0.01 +1 47611598 rs2405599 T C 100 PASS AA=N;AC=2;AF=0.31;AFR_AF=0.20;AMR_AF=0.25;AN=2;ASN_AF=0.59;AVGPOST=0.9905;ERATE=0.0132;EUR_AF=0.21;LDAF=0.3124;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 47614434 rs4926600 C T 100 PASS AA=c;AC=2;AF=0.13;AFR_AF=0.03;AMR_AF=0.11;AN=2;ASN_AF=0.29;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1272;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.27,-0.02 +1 47685455 rs927462 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9998;RSQ=0.0640;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 47717189 rs2758735 A G 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.45;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4077;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 47735280 rs2742104 T C 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.45;AN=2;ASN_AF=0.42;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4084;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 47767914 rs3125630 G A 100 PASS AA=A;AC=1;AF=0.61;AFR_AF=0.86;AMR_AF=0.57;AN=2;ASN_AF=0.59;AVGPOST=0.9943;ERATE=0.0090;EUR_AF=0.47;LDAF=0.6072;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 47799639 rs7543016 G C 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.79;AMR_AF=0.55;AN=2;ASN_AF=0.59;AVGPOST=0.9784;ERATE=0.0031;EUR_AF=0.47;LDAF=0.5859;RSQ=0.9686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.38,-0.38,-0.27 +1 47842431 rs3125648 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9970;ERATE=0.0028;EUR_AF=0.99;LDAF=0.9586;RSQ=0.9740;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 47904909 rs2405913 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9977;RSQ=0.6464;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.70,-0.51,-0.16 +1 48695114 rs200484428 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 48697733 rs212991 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 48698062 rs61743842 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 48764419 rs1056042 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.35;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3126;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 48937691 rs2275309 A T 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.35;AN=2;ASN_AF=0.35;AVGPOST=0.9952;ERATE=0.0005;EUR_AF=0.44;LDAF=0.3134;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-0.17,-0.50,-2.88 +1 49056695 rs7543402 T C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.45;AMR_AF=0.36;AN=2;ASN_AF=0.04;AVGPOST=0.9968;ERATE=0.0012;EUR_AF=0.35;LDAF=0.2917;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 50661411 rs2480683 C T 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.41;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8473;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 50666515 rs2494876 C T 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.37;AMR_AF=0.88;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.89;LDAF=0.7128;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 50957509 rs1149790 A T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.94;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=0.9770;ERATE=0.0140;EUR_AF=0.89;LDAF=0.9299;RSQ=0.8782;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 51777748 rs7521849 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.47;AMR_AF=0.16;AN=2;ASN_AF=0.30;AVGPOST=0.9934;ERATE=0.0006;EUR_AF=0.13;LDAF=0.2578;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 51873951 rs1065754 G A 100 PASS AA=A;AC=1;AF=0.80;AFR_AF=0.86;AMR_AF=0.74;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.65;LDAF=0.8022;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 52256359 rs41293251 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.07;AVGPOST=0.9992;ERATE=0.0168;EUR_AF=0.06;LDAF=0.0614;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 52264064 rs1770791 A G 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.65;AMR_AF=0.36;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.3380;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 52266242 rs8375 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.23;AMR_AF=0.56;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5388;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 52290984 rs11205896 T G 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.26;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5452;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 52293570 rs2077725 G A 100 PASS AA=g;AC=2;AF=0.68;AFR_AF=0.44;AMR_AF=0.75;AN=2;ASN_AF=0.92;AVGPOST=0.9888;ERATE=0.0040;EUR_AF=0.61;LDAF=0.6754;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 52402956 rs10888742 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9086;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 52729432 rs75677938 C G 100 PASS AA=-;AC=2;AF=0.38;AFR_AF=0.03;AMR_AF=0.49;AN=2;ASN_AF=0.55;AVGPOST=0.9789;ERATE=0.0058;EUR_AF=0.42;LDAF=0.3786;RSQ=0.9722;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.65,-0.01 +1 52991638 rs12123698 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.02;AMR_AF=0.47;AN=2;ASN_AF=0.44;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.37;LDAF=0.3275;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53072454 rs1970951 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.96;AMR_AF=0.85;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8537;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53250650 rs6588443 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.90;AMR_AF=0.62;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.43;LDAF=0.7103;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53453683 rs7516939 C T 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.79;AMR_AF=0.31;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.3688;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53480745 rs7529265 G A 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.06;LDAF=0.1970;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53493625 rs17107640 A G 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.16;AMR_AF=0.21;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.06;LDAF=0.1892;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53527948 rs7513730 T G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.79;AMR_AF=0.32;AN=2;ASN_AF=0.41;AVGPOST=0.9889;ERATE=0.0021;EUR_AF=0.10;LDAF=0.3733;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.40,-0.22 +1 53527996 rs56054926 A G 100 PASS AA=G;AC=1;AF=0.37;AFR_AF=0.79;AMR_AF=0.33;AN=2;ASN_AF=0.41;AVGPOST=0.9865;ERATE=0.0012;EUR_AF=0.10;LDAF=0.3711;RSQ=0.9817;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.46 +1 53535478 rs1288386 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.55;AVGPOST=0.9942;ERATE=0.0006;EUR_AF=0.43;LDAF=0.3808;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.900:-0.02,-1.27,-5.00 +1 53537266 rs1769316 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.48;AMR_AF=0.59;AN=2;ASN_AF=0.70;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5471;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.98,-0.00 +1 53544289 rs11206087 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.20;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1137;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53547800 rs6687909 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.40;AMR_AF=0.13;AN=2;ASN_AF=0.24;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.02;LDAF=0.1810;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 53553702 rs1288400 A G 100 PASS AA=a;AC=2;AF=0.96;AFR_AF=0.81;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9566;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53554680 rs3816744 T C 100 PASS AA=T;AC=1;AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1102;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53558270 rs1288406 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.76;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.84;LDAF=0.8606;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53558366 rs12129653 T C 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1256;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53559247 rs12045217 C T 100 PASS AA=c;AC=1;AF=0.11;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1103;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +1 53600078 rs3737989 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.32;AN=2;ASN_AF=0.31;AVGPOST=0.9996;ERATE=0.0031;EUR_AF=0.16;LDAF=0.2277;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53676401 rs2229291 T G 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0622;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53676448 rs1799821 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.30;AMR_AF=0.39;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5003;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53683921 rs12140585 C G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.17;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2752;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 53684525 rs436887 C G 100 PASS AA=-;AC=2;AF=0.84;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.66;LDAF=0.8362;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53716416 rs3737983 G A 100 PASS AA=A;AC=2;AF=0.43;AFR_AF=0.27;AMR_AF=0.26;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4356;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53723965 rs2297661 C G 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.12;AMR_AF=0.02;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0005;LDAF=0.0837;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 53732315 rs2297660 G T 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4022;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 53974987 rs10749691 G T 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.33;AMR_AF=0.72;AN=2;ASN_AF=0.53;AVGPOST=0.9929;ERATE=0.0007;EUR_AF=0.81;LDAF=0.6115;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.90,-0.06 +1 54325688 rs11206230 T C 100 PASS AA=t;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0512;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 54344282 rs2272928 C A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.73;AMR_AF=0.52;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6654;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 54354658 rs2294508 T G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2345;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 54359922 rs2294510 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.22;AMR_AF=0.04;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1003;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 54375570 rs2235544 C A 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.18;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9955;ERATE=0.0013;EUR_AF=0.53;LDAF=0.4467;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 54375701 rs11206244 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2857;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 54561916 rs7555099 C T 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.88;AMR_AF=0.53;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.5795;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 54606804 rs3766465 C T 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.78;AMR_AF=0.81;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8310;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 54607051 rs671103 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 54610389 rs34826914 C G 100 PASS AA=C;AC=1;AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0324;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 54670902 rs139458279 C G 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 54681920 rs13571 G C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.59;AMR_AF=0.65;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.79;LDAF=0.6271;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 54683856 rs15921 C G 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.37;AMR_AF=0.35;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3615;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 54683925 rs6621 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.13;AMR_AF=0.18;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2212;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55060251 rs2304306 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55063130 rs2304304 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0869;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.59,-0.13,-5.00 +1 55064980 rs2304303 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0859;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55065022 rs200922642 G A 100 PASS AA=G;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0014;RSQ=0.9709;SNPSOURCE=EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55069651 rs41297133 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0302;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55069986 rs746503 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.43;AMR_AF=0.59;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5255;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55074597 rs12073609 T C 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.14;AN=2;ASN_AF=0.23;AVGPOST=0.9953;ERATE=0.0074;EUR_AF=0.05;LDAF=0.1233;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55074922 rs2289016 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.28;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2697;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55075062 rs2289015 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0873;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55075122 rs11206394 C G 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.13;AMR_AF=0.15;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1357;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55076238 rs7535372 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.18;AN=2;ASN_AF=0.21;AVGPOST=0.9823;ERATE=0.0324;EUR_AF=0.08;LDAF=0.1389;RSQ=0.9498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55080568 rs76533361 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0891;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55085499 rs11206396 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.65;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5279;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55118566 rs1655520 C G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9630;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55119515 rs1655519 T G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.47;AMR_AF=0.38;AN=2;ASN_AF=0.39;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3864;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55119546 rs1655518 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.85;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9656;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55134487 rs478513 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.36;AMR_AF=0.45;AN=2;ASN_AF=0.38;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3537;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55136529 rs480963 T C 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.29;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9867;ERATE=0.0053;EUR_AF=0.29;LDAF=0.3374;RSQ=0.9773;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +1 55139741 rs570218 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.92;AMR_AF=0.82;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.80;LDAF=0.8828;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55167773 rs646356 T A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=0.9924;ERATE=0.0004;EUR_AF=0.83;LDAF=0.9064;RSQ=0.9667;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55167882 rs151176802 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0115;RSQ=0.9510;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55182300 rs1147990 T A 100 PASS AA=A;AC=1;AF=0.66;AFR_AF=0.56;AMR_AF=0.59;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6630;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55197149 rs3815226 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.54;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.20;LDAF=0.2753;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55251689 rs586462 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=0.9941;ERATE=0.0119;EUR_AF=0.99;LDAF=0.9864;RSQ=0.8468;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55266845 rs1147984 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.29;AVGPOST=0.9980;ERATE=0.0004;EUR_AF=0.60;LDAF=0.4806;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55271774 rs757581 A G 100 PASS AA=g;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.50;AN=2;ASN_AF=0.42;AVGPOST=0.9713;ERATE=0.0041;EUR_AF=0.60;LDAF=0.5269;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.22,-0.40 +1 55272643 rs6666034 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.10;AMR_AF=0.15;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.14;LDAF=0.1404;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55273580 rs9782980 G T 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.52;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4761;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55277430 rs10788986 T A 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.47;AMR_AF=0.47;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.61;LDAF=0.4617;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55277599 rs600499 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55318108 rs667222 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.40;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.4017;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55319902 rs718265 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.67;AMR_AF=0.60;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5987;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55330966 rs611057 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55446697 rs2253465 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.38;AMR_AF=0.77;AN=2;ASN_AF=0.49;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.78;LDAF=0.6120;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 55457710 rs2500326 G A 100 PASS AA=A;AC=2;AF=0.78;AFR_AF=0.80;AMR_AF=0.91;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7820;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55457815 rs2495513 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.80;AMR_AF=0.91;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7820;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55465047 rs78904893 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.16;AMR_AF=0.13;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1015;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55473935 rs200886926 T C 100 PASS AA=T;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9756;SNPSOURCE=EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +1 55505732 rs2495482 A G 100 PASS AA=G;AC=1;AF=0.91;AFR_AF=0.82;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.94;LDAF=0.9070;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-1.66,-0.01,-5.00 +1 55518316 rs2483205 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.45;AMR_AF=0.35;AN=2;ASN_AF=0.21;AVGPOST=0.9963;ERATE=0.0104;EUR_AF=0.47;LDAF=0.3769;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55518467 rs2495477 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.72;AMR_AF=0.34;AN=2;ASN_AF=0.25;AVGPOST=0.9945;ERATE=0.0076;EUR_AF=0.41;LDAF=0.4253;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 55523033 rs509504 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9866;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55524197 rs540796 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.79;AMR_AF=0.88;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8642;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55524237 rs562556 G A 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.78;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9859;ERATE=0.0069;EUR_AF=0.81;LDAF=0.8490;RSQ=0.9592;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 55529187 rs505151 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.71;AMR_AF=0.96;AN=2;ASN_AF=0.95;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9023;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 56977819 rs3738570 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0744;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 57185818 rs857141 A G 100 PASS AA=g;AC=2;AF=0.79;AFR_AF=0.96;AMR_AF=0.77;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7930;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 57209695 rs1156845 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1439;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 57224460 rs857103 G C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.97;AMR_AF=0.75;AN=2;ASN_AF=0.93;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.63;LDAF=0.8019;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +1 57258485 rs1935553 A G 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2919;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 57395251 rs605648 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.80;AMR_AF=0.89;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.86;LDAF=0.8692;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 57422484 rs1013579 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9807;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 59004979 rs902925 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9844;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 59125683 rs232777 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.43;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.21;LDAF=0.2585;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 59127207 rs232780 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.44;AMR_AF=0.23;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.21;LDAF=0.2596;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 59131311 rs232790 G T 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.84;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8843;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 59139223 rs2064370 C G 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.48;AMR_AF=0.64;AN=2;ASN_AF=0.62;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5780;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 59142713 rs579110 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.69;AMR_AF=0.67;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6294;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 59147420 rs11207292 G A 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.48;AMR_AF=0.64;AN=2;ASN_AF=0.62;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5782;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 59147926 rs12139511 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.61;AMR_AF=0.66;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6115;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 59148118 rs17118103 A T 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1427;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 59150941 rs2206764 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.88;AMR_AF=0.89;AN=2;ASN_AF=0.93;AVGPOST=0.9821;ERATE=0.0124;EUR_AF=0.85;LDAF=0.8806;RSQ=0.9341;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.96,-0.00 +1 59158632 rs12097333 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.49;AMR_AF=0.65;AN=2;ASN_AF=0.62;AVGPOST=0.9926;ERATE=0.0087;EUR_AF=0.59;LDAF=0.5866;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 59787350 rs835409 T G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.56;AMR_AF=0.41;AN=2;ASN_AF=0.49;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4499;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 59844471 rs835435 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.69;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0020;EUR_AF=0.42;LDAF=0.4854;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 60392236 rs11572193 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.10;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.0315;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 60466814 rs626251 T C 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.63;AMR_AF=0.63;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5773;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +1 61743160 rs332827 G A 100 PASS AA=G;AC=2;AF=0.38;AFR_AF=0.05;AMR_AF=0.56;AN=2;ASN_AF=0.48;AVGPOST=0.9995;ERATE=0.0024;EUR_AF=0.45;LDAF=0.3848;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 61869783 rs2236059 G A 100 PASS AA=G;AC=2;AF=0.37;AFR_AF=0.25;AMR_AF=0.34;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0013;EUR_AF=0.31;LDAF=0.3698;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62232031 rs1286835 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9291;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62261168 rs7516332 A G 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.25;AMR_AF=0.57;AN=2;ASN_AF=0.41;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4228;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62330080 rs2799627 T G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62380270 rs1134766 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.89;AMR_AF=0.81;AN=2;ASN_AF=0.80;AVGPOST=0.9963;ERATE=0.0175;EUR_AF=0.72;LDAF=0.7931;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62380298 rs1056513 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.10;AMR_AF=0.51;AN=2;ASN_AF=0.61;AVGPOST=0.9970;ERATE=0.0196;EUR_AF=0.64;LDAF=0.4867;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0154;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 62393394 rs2251182 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.87;AMR_AF=0.91;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8684;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62483657 rs7528797 C T 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.20;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0878;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 62516683 rs2498982 G C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.73;AMR_AF=0.58;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5252;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 62579823 rs1475563 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.42;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6453;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62579907 rs7418709 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.26;AMR_AF=0.21;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.06;LDAF=0.3002;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 62594593 rs2476194 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.51;AN=2;ASN_AF=0.07;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.54;LDAF=0.3270;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 62713224 rs2941679 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9827;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62713246 rs10889315 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.26;AMR_AF=0.35;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3049;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 62728784 rs2666472 A G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7171;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62728838 rs2258470 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7171;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62728861 rs2260581 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.54;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7175;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 62728918 rs2262110 G A 100 PASS AA=A;AC=2;AF=0.72;AFR_AF=0.53;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7171;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +1 62729015 rs2262106 G A 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.51;AMR_AF=0.77;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7113;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.64,-0.00 +1 62732421 rs11207949 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.27;LDAF=0.3532;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 62733939 rs11207950 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.58;AMR_AF=0.41;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4082;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 62738904 rs7516290 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.88;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7824;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 62739198 rs17855078 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.14;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2253;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 62740065 rs12127930 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.63;AMR_AF=0.41;AN=2;ASN_AF=0.24;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4258;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 62740446 rs2666506 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.89;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7890;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62740449 rs2666507 T C 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.82;AMR_AF=0.77;AN=2;ASN_AF=0.81;AVGPOST=0.9988;ERATE=0.0008;EUR_AF=0.71;LDAF=0.7725;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 62939634 rs1168007 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9694;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 63001120 rs1168018 A C 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.36;AMR_AF=0.66;AN=2;ASN_AF=0.78;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6338;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 63284830 rs17123872 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.14;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0349;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 63881552 rs4630153 C T 100 PASS AA=T;AC=1;AF=0.78;AFR_AF=0.88;AMR_AF=0.73;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7798;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 63920515 rs17319708 C G 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.0041;AMR_AF=0.21;AN=2;ASN_AF=0.03;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1219;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 63991267 rs217478 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 63999087 rs217454 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3830;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 64100478 rs6588052 A T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.59;AMR_AF=0.44;AN=2;ASN_AF=0.69;AVGPOST=0.9995;ERATE=0.0018;EUR_AF=0.38;LDAF=0.5190;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 64114301 rs11208257 T C 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.21;AMR_AF=0.36;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2386;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 64117537 rs2269238 G T 100 PASS AA=T;AC=2;AF=0.28;AFR_AF=0.38;AMR_AF=0.37;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2760;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 64125234 rs11208265 G T 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.46;AMR_AF=0.36;AN=2;ASN_AF=0.29;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3368;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 64125368 rs8294 C T 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2043;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 64515379 rs1772626 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.60;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.84;LDAF=0.8139;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 64608329 rs2762833 G T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=0.9851;ERATE=0.0701;EUR_AF=0.90;LDAF=0.9023;RSQ=0.9303;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 64680654 rs7534166 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.52;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2656;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +1 65016349 rs2164571 A T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.81;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.9273;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65068638 rs6665437 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9894;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65099978 rs2118102 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9309;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65113568 rs6588100 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9984;RSQ=0.9164;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65119397 rs7518616 A G 100 PASS AA=A;AC=2;AF=0.33;AFR_AF=0.46;AMR_AF=0.23;AN=2;ASN_AF=0.61;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.08;LDAF=0.3298;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65147002 rs3828064 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.17;AMR_AF=0.10;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1143;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65270549 rs12134044 A G 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.20;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.14;LDAF=0.0947;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65301238 rs2274945 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0398;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65311214 rs3737139 G C 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0398;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65321250 rs2230586 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0398;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65321388 rs310229 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.64;AMR_AF=0.44;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3854;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65321419 rs11579283 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0398;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.40 +1 65325970 rs310224 C T 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.65;AMR_AF=0.43;AN=2;ASN_AF=0.26;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3866;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65330682 rs2256298 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.63;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3497;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.73 +1 65335095 rs11585932 T C 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0397;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65614260 rs115225200 C T 100 PASS AA=C;AC=2;AF=0.15;AFR_AF=0.23;AMR_AF=0.29;AN=2;ASN_AF=0.10;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1511;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.92,-0.06 +1 65684425 rs11208611 C T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.84;AMR_AF=0.52;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.5672;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65690461 rs4915685 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.32;AMR_AF=0.27;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 65845042 rs2296480 A T 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.63;AMR_AF=0.20;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.3633;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65845076 rs2296481 C T 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.63;AMR_AF=0.20;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.08;LDAF=0.3628;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 65858088 rs6588144 T C 100 PASS AA=T;AC=2;AF=0.40;AFR_AF=0.37;AMR_AF=0.48;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4013;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65858145 rs4325172 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.27;AMR_AF=0.46;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3638;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65860687 rs4582839 A C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.98;AMR_AF=0.64;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.59;LDAF=0.7343;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 65886398 rs3790435 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.85;AVGPOST=0.9982;ERATE=0.0005;EUR_AF=0.44;LDAF=0.5688;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.59,-0.51,-0.16 +1 65886448 rs3790434 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.38;AMR_AF=0.46;AN=2;ASN_AF=0.81;AVGPOST=0.9734;ERATE=0.0186;EUR_AF=0.42;LDAF=0.5154;RSQ=0.9623;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-0.74,-0.09 +1 66036501 rs2186248 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 66062325 rs3828034 A G 100 PASS AA=A;AC=1;AF=0.11;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1065;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 66075952 rs8179183 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.18;AMR_AF=0.19;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1453;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 66085574 rs3790439 T A 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.53;AMR_AF=0.48;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.5635;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 66088701 rs12067936 C A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.82;AVGPOST=0.9883;ERATE=0.0093;EUR_AF=0.37;LDAF=0.5290;RSQ=0.9851;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.86 +1 66102257 rs1805096 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.43;AMR_AF=0.46;AN=2;ASN_AF=0.87;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5415;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 66829262 rs783039 A G 100 PASS AA=G;AC=1;AF=0.85;AFR_AF=0.94;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8492;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 66831370 rs783036 G A 100 PASS AA=A;AC=2;AF=0.46;AFR_AF=0.80;AMR_AF=0.46;AN=2;ASN_AF=0.13;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4649;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 67142675 rs11208943 T C 100 PASS AA=T;AC=2;AF=0.13;AFR_AF=0.06;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1270;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 67145322 rs10889644 C A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.68;AMR_AF=0.73;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.56;LDAF=0.7285;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 67155865 rs200603211 C T 100 PASS AA=C;AC=1;AF=0.0018;AFR_AF=0.0020;AMR_AF=0.0028;AN=2;AVGPOST=0.9959;ERATE=0.0010;EUR_AF=0.0026;LDAF=0.0041;RSQ=0.6538;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67243024 rs2133173 C A 100 PASS AA=C;AC=2;AF=0.22;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2248;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 67266756 rs549148 T A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.81;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8766;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 67279881 rs74609208 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0339;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67288045 rs482082 C T 100 PASS AA=c;AC=1;AF=0.54;AFR_AF=0.56;AMR_AF=0.50;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5416;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67288229 rs41300323 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0434;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67292478 rs36067642 T A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.39;AMR_AF=0.50;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4497;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67313122 rs148490193 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0055;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67390416 rs3008858 G C 100 PASS AA=C;AC=1;AF=0.81;AFR_AF=0.84;AMR_AF=0.86;AN=2;ASN_AF=0.88;AVGPOST=0.9973;ERATE=0.0033;EUR_AF=0.72;LDAF=0.8124;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67390468 rs1886686 C G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.86;AMR_AF=0.86;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.8195;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67436446 rs4553158 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.08;AVGPOST=0.9985;ERATE=0.0012;EUR_AF=0.18;LDAF=0.1015;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67438535 rs12131222 A T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.16;AMR_AF=0.14;AN=2;ASN_AF=0.11;AVGPOST=0.9981;ERATE=0.0010;EUR_AF=0.27;LDAF=0.1820;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67442275 rs11208979 C T 100 PASS AA=T;AC=1;AF=0.18;AFR_AF=0.16;AMR_AF=0.14;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.1829;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67512903 rs1024229 G T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.76;AMR_AF=0.69;AN=2;ASN_AF=0.64;AVGPOST=0.9971;ERATE=0.0022;EUR_AF=0.64;LDAF=0.6722;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67512920 rs1024230 A C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6696;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67558739 rs6588237 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.92;AMR_AF=0.90;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8935;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 67560897 rs10889653 A G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.96;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.9022;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 67560956 rs11208997 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.91;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.9095;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 67561056 rs61782288 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0334;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67633812 rs1884444 G T 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.39;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.53;LDAF=0.5167;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67672765 rs7539625 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3345;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67685387 rs7530511 T C 100 PASS AA=C;AC=1;AF=0.87;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8693;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67795319 rs1495963 T C 100 PASS AA=C;AC=1;AF=0.86;AFR_AF=0.75;AMR_AF=0.91;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.97;LDAF=0.8651;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67833501 rs2252596 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.20;AMR_AF=0.09;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1239;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 67852335 rs4297265 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4319;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67861520 rs2229546 C A 100 PASS AA=A;AC=1;AF=0.55;AFR_AF=0.54;AMR_AF=0.58;AN=2;ASN_AF=0.38;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.68;LDAF=0.5506;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 67890526 rs6702742 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4292;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 68173264 rs2295942 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.16;AMR_AF=0.49;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4064;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 68603432 rs1430754 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.15;AN=2;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.18;LDAF=0.0954;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 68603586 rs983034 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.12;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9992;ERATE=0.0013;EUR_AF=0.37;LDAF=0.2472;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 68620762 rs3762371 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.19;AMR_AF=0.35;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2815;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 68624878 rs3748705 C T 100 PASS 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AA=A;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.2706;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 71437436 rs200317724 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +1 71512643 rs5671 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.08;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0836;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 71537980 rs41287936 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.10;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0636;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 71538191 rs11556475 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0832;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 72058543 rs3795696 A T 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.05;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0553;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 72058552 rs1413368 G A 100 PASS AA=A;AC=1;AF=0.88;AFR_AF=0.68;AMR_AF=0.93;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8780;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 74575182 rs1340472 C T 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.54;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.91;LDAF=0.8395;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 74665493 rs792310 G A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.15;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.48;LDAF=0.4575;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 74670172 rs12046751 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.15;AMR_AF=0.39;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.2784;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 74670325 rs186422789 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +1 74671519 rs571848 A G 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.14;AMR_AF=0.41;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.48;LDAF=0.4548;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 74819077 rs6424586 T G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.83;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9360;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.69,-0.00 +1 75006027 rs3895907 A G 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.20;AMR_AF=0.39;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3300;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 75036783 rs9326115 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75036812 rs9326116 C T 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9822;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75072264 rs41289216 G T 100 PASS AA=G;AC=2;AF=0.33;AFR_AF=0.25;AMR_AF=0.47;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3309;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75097426 rs11210490 G C 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3405;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75172001 rs7527057 T A 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.05;AMR_AF=0.37;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2573;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75190452 rs1051122 C T 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.82;AMR_AF=0.80;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.7815;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75199152 rs277373 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9958;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75214390 rs749690 G C 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.12;AMR_AF=0.46;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.2843;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75672376 rs1948874 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.19;AMR_AF=0.46;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.4826;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 75681511 rs595009 T C 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.84;AMR_AF=0.88;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.85;LDAF=0.8899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 75699646 rs10493564 T C 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.37;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2299;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 75699771 rs10493565 A G 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.37;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2299;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 75699831 rs10493566 G A 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.37;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2299;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 75707652 rs7556057 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.34;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2212;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 75708529 rs1856128 A T 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.31;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2135;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 75716925 rs588098 C T 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.57;AMR_AF=0.77;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.72;LDAF=0.7573;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 76194054 rs7524467 C G 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.17;AMR_AF=0.31;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.1956;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76198436 rs2275378 T C 100 PASS AA=T;AC=2;AF=0.24;AFR_AF=0.33;AMR_AF=0.34;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2395;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76199345 rs2153126 C G 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.33;AMR_AF=0.34;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2395;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76205643 rs12127402 C A 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.20;AMR_AF=0.32;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2011;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76227022 rs1061337 A G 100 PASS AA=A;AC=2;AF=0.19;AFR_AF=0.17;AMR_AF=0.28;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.1878;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76257892 rs12703 A T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.99;AMR_AF=0.83;AN=2;ASN_AF=0.67;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8614;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76269372 rs5745323 T C 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.3903;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76276353 rs12122939 T C 100 PASS AA=T;AC=2;AF=0.18;AFR_AF=0.18;AMR_AF=0.26;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.1764;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76333163 rs5745433 T G 100 PASS AA=T;AC=2;AF=0.17;AFR_AF=0.18;AMR_AF=0.25;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.1696;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 76378576 rs5745550 C A 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 76779444 rs17626151 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0124;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 77093180 rs1184626 C A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.64;AMR_AF=0.50;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4256;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 77558057 rs1048575 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.45;AMR_AF=0.36;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3515;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 77627096 rs839825 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9909;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 77634948 rs1779199 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 77763542 rs1167206 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9854;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 78024284 rs6675743 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.56;AMR_AF=0.83;AN=2;ASN_AF=0.72;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7194;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 78383467 rs1749913 G A 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.70;AMR_AF=0.75;AN=2;ASN_AF=0.81;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.87;LDAF=0.7931;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 78399207 rs4483454 C G 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.46;AMR_AF=0.68;AN=2;ASN_AF=0.81;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7086;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 78408536 rs3767028 C G 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.12;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1111;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 78429408 rs2274257 G C 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.05;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0955;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 78958491 rs35227129 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0480;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 79094593 rs273257 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9898;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 79357360 rs2275902 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.28;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9964;ERATE=0.0017;EUR_AF=0.31;LDAF=0.2624;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 79392756 rs12754818 C A 100 PASS AA=a;AC=1;AF=0.62;AFR_AF=0.48;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6227;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 79403751 rs985277 T G 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.44;AMR_AF=0.65;AN=2;ASN_AF=0.72;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5957;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 82421596 rs11163397 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9959;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 84876731 rs1506700 T G 100 PASS AA=g;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.54;AN=2;ASN_AF=0.60;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5441;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 84878228 rs7511984 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.19;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1366;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 84946745 rs7413066 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9895;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 85029077 rs15911 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0022;EUR_AF=0.21;LDAF=0.1316;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 85031630 rs2994953 G A 100 PASS AA=G;AC=2;AF=0.26;AFR_AF=0.34;AMR_AF=0.27;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.24;LDAF=0.2624;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 85035592 rs147024168 C A 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0338;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 85036239 rs2303306 C G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.76;AMR_AF=0.37;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3857;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 85039955 rs2303307 G A 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.27;AMR_AF=0.25;AN=2;ASN_AF=0.21;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2447;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.31,-0.02 +1 85040069 rs2911592 G A 100 PASS AA=G;AC=2;AF=0.24;AFR_AF=0.28;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9926;ERATE=0.0006;EUR_AF=0.24;LDAF=0.2416;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.62,-0.51,-0.16 +1 85040070 rs115347546 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.12;AMR_AF=0.15;AN=2;ASN_AF=0.03;AVGPOST=0.9934;ERATE=0.0006;EUR_AF=0.22;LDAF=0.1357;RSQ=0.9775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-0.18,-0.48,-2.69 +1 85113203 rs2994949 T C 100 PASS AA=C;AC=1;AF=0.79;AFR_AF=0.61;AMR_AF=0.84;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7916;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 85113229 rs1057746 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.24;AMR_AF=0.55;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5571;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 85128262 rs2911563 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.66;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9925;ERATE=0.0138;EUR_AF=0.81;LDAF=0.7297;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 85397286 rs34793286 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.05;AMR_AF=0.24;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2514;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 85405389 rs12064092 T G 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.13;AMR_AF=0.04;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0489;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 85462582 rs11161503 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.26;AMR_AF=0.50;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4611;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 85488030 rs2028304 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.81;AMR_AF=0.76;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7897;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 85547945 rs7534574 T C 100 PASS AA=T;AC=2;AF=0.45;AFR_AF=0.44;AMR_AF=0.49;AN=2;ASN_AF=0.31;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4467;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 85560264 rs709764 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.39;AMR_AF=0.15;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1517;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 85595645 rs1020770 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.40;AMR_AF=0.61;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5846;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 85624549 rs709786 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9135;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 85624864 rs817412 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9817;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 85648620 rs817443 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9808;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 85648905 rs11161539 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.24;AMR_AF=0.52;AN=2;ASN_AF=0.59;AVGPOST=0.9986;ERATE=0.0006;EUR_AF=0.65;LDAF=0.5228;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 85666156 rs12121540 T G 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.49;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3002;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 85724328 rs4949926 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.14;AMR_AF=0.27;AN=2;ASN_AF=0.28;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2166;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 85742012 rs11576939 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2299;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 85787114 rs233116 A T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86167957 rs1764298 C T 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.42;AMR_AF=0.75;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.85;LDAF=0.7601;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86171885 rs17128109 T C 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 86173298 rs1539444 C T 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.39;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.51;LDAF=0.4799;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 86210546 rs7547023 G A 100 PASS AA=G;AC=1;AF=0.88;AFR_AF=0.72;AMR_AF=0.84;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.97;LDAF=0.8834;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86249911 rs313725 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.67;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8860;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0200;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86334316 rs17411495 T C 100 PASS AA=t;AC=1;AF=0.45;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.60;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.41;LDAF=0.4456;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86355212 rs76666601 C A 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.20;AN=2;ASN_AF=0.17;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.03;LDAF=0.1002;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 86375654 rs1502657 C G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.62;AMR_AF=0.77;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7179;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86377028 rs10493777 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.20;AMR_AF=0.45;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.33;LDAF=0.3742;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86453237 rs11799965 T G 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.21;AMR_AF=0.35;AN=2;ASN_AF=0.23;AVGPOST=0.9984;ERATE=0.0002;EUR_AF=0.29;LDAF=0.2674;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 86482922 rs557928 A T 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.44;AMR_AF=0.33;AN=2;ASN_AF=0.11;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2877;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +1 86487981 rs516213 G A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.89;AMR_AF=0.76;AN=2;ASN_AF=0.85;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7636;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86488232 rs641712 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.44;AMR_AF=0.33;AN=2;ASN_AF=0.12;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2852;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86524903 rs41309191 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0275;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86554821 rs12405791 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.34;AMR_AF=0.50;AN=2;ASN_AF=0.26;AVGPOST=0.9837;ERATE=0.0036;EUR_AF=0.57;LDAF=0.4240;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +1 86590915 rs2174767 G A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9643;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86590948 rs11161746 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.18;AN=2;ASN_AF=0.05;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1172;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86591837 rs11161747 G A 100 PASS AA=g;AC=1;AF=0.66;AFR_AF=0.56;AMR_AF=0.69;AN=2;ASN_AF=0.62;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.73;LDAF=0.6570;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 86621992 rs1999747 C A 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.46;AMR_AF=0.64;AN=2;ASN_AF=0.59;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.70;LDAF=0.6059;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 86891005 rs1158506 C A 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.47;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5689;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86900332 rs17449526 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2482;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86900372 rs17409304 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.15;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2482;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86909703 rs3820039 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.15;AMR_AF=0.29;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2161;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 86939130 rs2145412 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.71;AMR_AF=0.92;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8999;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86939390 rs2180762 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.78;AMR_AF=0.95;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9223;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86952324 rs2734705 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.91;AMR_AF=0.88;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8725;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86959173 rs2791494 T C 100 PASS AA=C;AC=2;AF=0.84;AFR_AF=0.77;AMR_AF=0.87;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8409;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 86964434 rs201131437 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +1 86965419 rs1882753 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.34;AMR_AF=0.25;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3501;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 87036746 rs772599 C A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.87;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.76;LDAF=0.8507;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 87045902 rs1932809 A T 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.24;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=0.8069;ERATE=0.0972;EUR_AF=0.23;LDAF=0.2847;RSQ=0.6727;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.400:-0.48,-0.48,-0.48 +1 87200729 rs263483 C G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.75;AMR_AF=0.44;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.36;LDAF=0.5494;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 87549858 rs2798675 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9419;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 87563668 rs1199677 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 87570398 rs1621247 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.33;AMR_AF=0.80;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7258;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89225976 rs430600 T C 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.90;AMR_AF=0.64;AN=2;ASN_AF=0.63;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7105;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89236029 rs7541301 T A 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.36;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5019;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89271574 rs786906 T C 100 PASS AA=T;AC=2;AF=0.50;AFR_AF=0.36;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=0.9988;ERATE=0.0002;EUR_AF=0.59;LDAF=0.5016;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89322982 rs2794318 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9890;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89474818 rs17433780 A G 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.25;AMR_AF=0.30;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.32;LDAF=0.2715;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89475135 rs10493821 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2257;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89478854 rs4656076 C G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.25;AMR_AF=0.64;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.76;LDAF=0.5599;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89478868 rs113490655 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.16;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1413;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 89479063 rs4656077 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3221;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 89479074 rs4656078 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.34;AN=2;ASN_AF=0.28;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3222;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 89479758 rs3795543 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.55;AMR_AF=0.65;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.76;LDAF=0.6270;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89520574 rs10922554 C A 100 PASS AA=A;AC=2;AF=0.70;AFR_AF=0.78;AMR_AF=0.68;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.77;LDAF=0.6983;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89521841 rs1048443 G C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.56;AMR_AF=0.33;AN=2;ASN_AF=0.19;AVGPOST=0.9965;ERATE=0.0016;EUR_AF=0.30;LDAF=0.3355;RSQ=0.9944;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 89522512 rs4376712 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.18;AMR_AF=0.35;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3496;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89522646 rs1048425 G C 100 PASS AA=C;AC=2;AF=0.70;AFR_AF=0.78;AMR_AF=0.68;AN=2;ASN_AF=0.54;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.76;LDAF=0.6978;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.28,-0.00 +1 89523927 rs60070945 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.28;AMR_AF=0.31;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2518;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 89579941 rs2230338 T C 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.45;AMR_AF=0.66;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6371;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89582690 rs1803632 G C 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.45;AMR_AF=0.65;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6367;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89615979 rs586609 C T 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.68;AMR_AF=0.68;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6929;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89616127 rs138285876 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +1 89637578 rs676913 G A 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.73;AMR_AF=0.68;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.65;LDAF=0.7011;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89652078 rs608339 A T 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.32;AN=2;ASN_AF=0.33;AVGPOST=0.9933;ERATE=0.0064;EUR_AF=0.44;LDAF=0.3099;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89652097 rs1142886 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.31;AN=2;ASN_AF=0.32;AVGPOST=0.9949;ERATE=0.0002;EUR_AF=0.37;LDAF=0.2818;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89655720 rs41296177 C T 100 PASS AA=C;AC=1;AF=0.0027;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 89727870 rs76346754 A T 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1587;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89732237 rs61729628 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1599;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89844035 rs35837853 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1193;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 89846152 rs4582772 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.11;AN=2;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0545;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 89847372 rs4658359 G T 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7920;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89847411 rs4658360 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7920;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89847444 rs4658146 A G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.91;AMR_AF=0.83;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7916;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89849201 rs928652 C G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8629;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89849268 rs41288387 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1197;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 89849350 rs928653 G A 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8629;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 89849742 rs959460 A T 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.92;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8629;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 90178336 rs142843076 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0142;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 90178743 rs474536 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 90179843 rs139429089 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 90486412 rs2816881 T G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.68;AMR_AF=0.69;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.59;LDAF=0.7082;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 90493026 rs10922744 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.48;AMR_AF=0.68;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.58;LDAF=0.6581;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 91728053 rs585898 G A 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 91739414 rs281963 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9975;RSQ=0.9235;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 91781413 rs281992 T G 100 PASS AA=T;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.68;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7473;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 91841301 rs282036 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9976;RSQ=0.9545;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 91851253 rs282026 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 91859795 rs282009 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 91989572 rs488126 T G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9843;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 92174260 rs284878 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.95;AMR_AF=0.96;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9053;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 92177938 rs1805113 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.33;AMR_AF=0.32;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3081;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 92224347 rs11165441 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.19;AN=2;ASN_AF=0.29;AVGPOST=0.9993;ERATE=0.0006;EUR_AF=0.13;LDAF=0.1822;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 92262874 rs58760640 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.78;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7220;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 92428495 rs10783071 C A 100 PASS AA=A;AC=2;AF=0.77;AFR_AF=0.68;AMR_AF=0.87;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.92;LDAF=0.7674;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 92446398 rs2303967 T A 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.56;AMR_AF=0.71;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.79;LDAF=0.6664;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 92457843 rs10747493 C T 100 PASS AA=T;AC=2;AF=0.71;AFR_AF=0.63;AMR_AF=0.77;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7124;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 92946479 rs11164605 G A 100 PASS AA=a;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=0.9970;ERATE=0.0008;EUR_AF=0.81;LDAF=0.8888;RSQ=0.9867;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.78,-0.08 +1 92948938 rs34631763 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.03;AN=2;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0248;RSQ=0.9847;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.02,-1.44 +1 92979354 rs6603979 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.95;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.8889;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 93073228 rs11808092 C A 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.1476;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 93089823 rs7514716 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.95;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 93160902 rs2391199 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.95;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 93163385 rs7418336 A G 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.55;AMR_AF=0.65;AN=2;ASN_AF=0.88;AVGPOST=0.9886;ERATE=0.0063;EUR_AF=0.62;LDAF=0.6787;RSQ=0.9816;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93580581 rs2815427 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.9135;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 93580992 rs566843 C T 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.20;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.74;LDAF=0.6765;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93581024 rs2295423 T C 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.11;AMR_AF=0.60;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.64;LDAF=0.5159;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93602194 rs2281524 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.95;AMR_AF=0.84;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.92;LDAF=0.8612;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 93620393 rs1060622 G A 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.09;AMR_AF=0.59;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5096;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93646207 rs2297707 T C 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.15;AMR_AF=0.61;AN=2;ASN_AF=0.66;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.66;LDAF=0.5399;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93649732 rs6682670 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.16;AMR_AF=0.61;AN=2;ASN_AF=0.66;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5397;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93659350 rs2815411 A T 100 PASS AA=T;AC=1;AF=0.86;AFR_AF=0.75;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8633;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93672723 rs2815413 A C 100 PASS AA=A;AC=1;AF=0.75;AFR_AF=0.34;AMR_AF=0.84;AN=2;ASN_AF=0.96;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.82;LDAF=0.7530;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93676314 rs555161 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.16;AMR_AF=0.61;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.66;LDAF=0.5397;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93711782 rs3754186 T A 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.04;AMR_AF=0.51;AN=2;ASN_AF=0.66;AVGPOST=0.9978;ERATE=0.0004;EUR_AF=0.54;LDAF=0.4513;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 93712532 rs670650 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.25;AMR_AF=0.11;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1367;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 93744055 rs10874767 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.35;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1669;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 94343233 rs3789457 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.81;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7574;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 94367097 rs7515191 G A 100 PASS AA=A;AC=2;AF=0.42;AFR_AF=0.73;AMR_AF=0.48;AN=2;ASN_AF=0.25;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4228;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 94374576 rs2273406 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.19;AVGPOST=0.9808;ERATE=0.0015;EUR_AF=0.15;LDAF=0.2101;RSQ=0.9561;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-3.14,-0.48,-0.18 +1 94471075 rs1762114 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.39;AMR_AF=0.90;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.94;LDAF=0.7975;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 94487354 rs472908 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.77;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.56;LDAF=0.5843;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 94544234 rs3112831 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.16;AMR_AF=0.29;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2463;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 94544276 rs4147830 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.52;AMR_AF=0.49;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5228;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 94549029 rs526016 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.28;AN=2;ASN_AF=0.21;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2277;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 94576968 rs2297634 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.46;AMR_AF=0.57;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5312;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 94578548 rs4847281 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0010;EUR_AF=1.00;LDAF=0.9881;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0181;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 94639447 rs1999272 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9493;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 94670784 rs10443184 T C 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.22;AMR_AF=0.38;AN=2;ASN_AF=0.42;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3364;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 94980671 rs3118109 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9872;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 95001600 rs698946 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9819;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 95290003 rs6687749 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.42;AVGPOST=0.9991;ERATE=0.0008;EUR_AF=0.57;LDAF=0.5295;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 95330372 rs859098 G A 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.52;AMR_AF=0.82;AN=2;ASN_AF=0.99;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.78;LDAF=0.7826;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 95332864 rs12137650 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.14;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.2464;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 95358096 rs859063 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.38;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.60;LDAF=0.5036;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 95363663 rs41497749 A C 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.13;AMR_AF=0.15;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1650;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 95367649 rs859058 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.32;AMR_AF=0.56;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.4913;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 95530411 rs151088933 T C 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0115;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 95709821 rs259358 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9830;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 95709939 rs2296308 T G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.66;AMR_AF=0.86;AN=2;ASN_AF=0.79;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.88;LDAF=0.8022;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 95712458 rs592097 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.04;AMR_AF=0.06;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0878;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 97981242 rs2811178 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.61;AMR_AF=0.60;AN=2;ASN_AF=0.71;AVGPOST=0.9922;ERATE=0.0082;EUR_AF=0.61;LDAF=0.6340;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 97981243 rs2786783 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.17;AN=2;ASN_AF=0.24;AVGPOST=0.9907;ERATE=0.0044;EUR_AF=0.16;LDAF=0.1726;RSQ=0.9783;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 97981395 rs1801159 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.20;AMR_AF=0.19;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2044;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 98348885 rs1801265 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.55;AMR_AF=0.77;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7696;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 99150635 rs9433747 G A 100 PASS AA=A;AC=2;AF=0.88;AFR_AF=0.67;AMR_AF=0.96;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8798;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 99156634 rs35296149 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.07;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1065;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 99225627 rs2019213 G A 100 PASS AA=A;AC=1;AF=0.86;AFR_AF=0.87;AMR_AF=0.91;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8597;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 99470269 rs12057990 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.17;AN=2;ASN_AF=0.42;AVGPOST=0.9261;ERATE=0.0155;EUR_AF=0.23;LDAF=0.2634;RSQ=0.8507;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.850:-0.02,-1.39,-5.00 +1 100152443 rs1338576 T C 100 PASS AA=T;AC=1;AF=0.47;AFR_AF=0.35;AMR_AF=0.47;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.4703;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 100203597 rs7513916 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.92;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4871;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 100203648 rs7537296 C T 100 PASS AA=c;AC=1;AF=0.49;AFR_AF=0.92;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4877;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 100203693 rs7514021 G A 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.92;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.32;LDAF=0.4877;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 100316589 rs2307130 A G 100 PASS AA=A;AC=1;AF=0.43;AFR_AF=0.25;AMR_AF=0.47;AN=2;ASN_AF=0.53;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.46;LDAF=0.4300;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 100336361 rs2230306 C T 100 PASS AA=c;AC=1;AF=0.74;AFR_AF=0.95;AMR_AF=0.70;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.67;LDAF=0.7422;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 100340225 rs634880 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.88;AMR_AF=0.69;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0022;EUR_AF=0.68;LDAF=0.7290;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 100346741 rs3736296 T C 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.42;AMR_AF=0.60;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.54;LDAF=0.5607;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 100353675 rs555929 G A 100 PASS AA=A;AC=2;AF=0.68;AFR_AF=0.61;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6819;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 100357141 rs2035961 T A 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.37;AMR_AF=0.59;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5343;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 100358103 rs3753494 C T 100 PASS 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AA=C;AC=2;AF=0.90;AFR_AF=0.78;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8990;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 100818464 rs594529 T C 100 PASS AA=C;AC=1;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9830;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 101190173 rs2392221 C T 100 PASS AA=t;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.27;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1473;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 101203698 rs3176878 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.14;AMR_AF=0.21;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1220;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 101203827 rs3176879 G A 100 PASS 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AA=A;AC=2;AF=0.92;AFR_AF=0.72;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9205;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 103548319 rs11164662 C G 100 PASS AA=T;AC=1;AF=0.58;AFR_AF=0.17;AMR_AF=0.67;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5782;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 104116413 rs17851840 T C 100 PASS AA=t;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0477;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 107979396 rs480392 A C 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9579;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 108139003 rs3748702 C T 100 PASS 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AA=T;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.02;AN=2;AVGPOST=0.9968;ERATE=0.0003;LDAF=0.0105;RSQ=0.8902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.700:-0.48,-0.48,-0.48 +1 109103207 rs72978732 G T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.47;AMR_AF=0.17;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2262;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109170746 rs2133198 C T 100 PASS AA=C;AC=1;AF=0.78;AFR_AF=0.54;AMR_AF=0.84;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.93;LDAF=0.7797;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 109265029 rs4423040 G T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.23;AMR_AF=0.64;AN=2;ASN_AF=0.84;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5882;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109273456 rs4970809 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.58;AMR_AF=0.50;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.54;LDAF=0.4546;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109289353 rs1124427 C G 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.68;AMR_AF=0.57;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.74;LDAF=0.5664;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-3.70,-0.52,-0.16 +1 109301250 rs1277042 G C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.69;AMR_AF=0.57;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.74;LDAF=0.5670;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109337572 rs1149158 A C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.31;AMR_AF=0.43;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4319;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109351501 rs1149154 A G 100 PASS AA=G;AC=1;AF=0.42;AFR_AF=0.26;AMR_AF=0.42;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.4196;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109363140 rs1333129 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.26;AMR_AF=0.36;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3917;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109363232 rs1333130 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.26;AMR_AF=0.36;AN=2;ASN_AF=0.70;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3917;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109369797 rs11102506 T G 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.64;AMR_AF=0.57;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5133;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 109369915 rs7551421 G T 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.64;AMR_AF=0.57;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5087;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 109391486 rs1149142 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9918;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109395105 rs1277207 C T 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.88;AMR_AF=0.85;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.8634;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109486196 rs338466 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.75;AMR_AF=0.51;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.52;LDAF=0.5399;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109545046 rs184606 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9831;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.43,-0.02 +1 109566159 rs200099921 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109656946 rs667524 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.71;AMR_AF=0.47;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.4913;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109656981 rs586530 T C 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.60;AMR_AF=0.31;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3631;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.03,-1.15 +1 109704618 rs678238 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9987;RSQ=0.9672;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109735298 rs658779 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.39;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7527;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109735416 rs659543 A C 100 PASS AA=c;AC=2;AF=0.75;AFR_AF=0.39;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7523;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109735504 rs659659 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.39;AMR_AF=0.80;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7523;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109737063 rs2359246 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.32;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7303;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109737090 rs2359245 G A 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.33;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.78;LDAF=0.7321;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109737132 rs2359244 T C 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.46;AMR_AF=0.81;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7651;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109737172 rs2359243 C T 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.33;AMR_AF=0.79;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7308;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109742452 rs913178 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.49;AMR_AF=0.79;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7665;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109742485 rs913179 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.50;AMR_AF=0.79;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7678;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109745618 rs1052878 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.76;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8832;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109771063 rs683182 T C 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.41;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7262;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109778577 rs658092 T C 100 PASS AA=N;AC=2;AF=0.73;AFR_AF=0.43;AMR_AF=0.81;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7326;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109794252 rs454107 T C 100 PASS AA=N;AC=2;AF=0.92;AFR_AF=0.71;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9164;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109795026 rs413380 T C 100 PASS AA=N;AC=2;AF=0.92;AFR_AF=0.72;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9173;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109795608 rs437444 T C 100 PASS AA=N;AC=2;AF=0.93;AFR_AF=0.77;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9296;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109813510 rs41279716 A T 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9987;ERATE=0.0052;EUR_AF=0.19;LDAF=0.1208;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109816176 rs441853 A C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9964;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9754;RSQ=0.9395;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +1 109825232 rs147287389 G A 100 PASS AA=G;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0041;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 109836835 rs3738777 A G 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.12;AMR_AF=0.30;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3176;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109838833 rs616899 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9748;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109838918 rs629001 C T 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.72;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0031;EUR_AF=0.93;LDAF=0.9018;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109839392 rs604349 A G 100 PASS AA=a;AC=2;AF=0.79;AFR_AF=0.32;AMR_AF=0.89;AN=2;ASN_AF=0.97;AVGPOST=0.9993;ERATE=0.0022;EUR_AF=0.91;LDAF=0.7877;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109839433 rs1278285 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9465;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109884775 rs2228604 T G 100 PASS AA=t;AC=2;AF=0.72;AFR_AF=0.37;AMR_AF=0.83;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7166;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109897103 rs11142 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.65;AMR_AF=0.86;AN=2;ASN_AF=0.96;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7833;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 109958035 rs1465607 T C 100 PASS AA=c;AC=2;AF=0.76;AFR_AF=0.56;AMR_AF=0.85;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7605;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110086451 rs17575798 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2098;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110148974 rs1799875 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.07;AMR_AF=0.53;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0006;EUR_AF=0.46;LDAF=0.4351;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110151395 rs3738766 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.02;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0832;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 110162918 rs28362580 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.17;AMR_AF=0.06;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1540;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 110163879 rs28362581 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.32;AMR_AF=0.07;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.07;LDAF=0.1902;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 110168888 rs493972 C G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.99;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.65;LDAF=0.7787;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110169957 rs524998 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.90;AMR_AF=0.77;AN=2;ASN_AF=0.99;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.67;LDAF=0.8220;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110170896 rs863978 T C 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.75;AMR_AF=0.75;AN=2;ASN_AF=0.98;AVGPOST=0.9980;ERATE=0.0010;EUR_AF=0.67;LDAF=0.7839;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110171705 rs523786 A C 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.83;AMR_AF=0.76;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.67;LDAF=0.8029;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110201580 rs650985 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9763;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110201699 rs506008 T C 100 PASS AA=t;AC=2;AF=0.74;AFR_AF=0.43;AMR_AF=0.79;AN=2;ASN_AF=0.90;AVGPOST=0.9873;ERATE=0.0412;EUR_AF=0.80;LDAF=0.7414;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110210780 rs530021 C G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.92;AMR_AF=0.93;AN=2;ASN_AF=0.97;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.90;LDAF=0.9238;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110210818 rs2073483 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.16;AMR_AF=0.54;AN=2;ASN_AF=0.64;AVGPOST=0.9942;ERATE=0.0024;EUR_AF=0.39;LDAF=0.4288;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.92 +1 110230767 rs10857795 G A 100 PASS AA=g;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.96;AVGPOST=0.9186;ERATE=0.0008;EUR_AF=0.86;LDAF=0.8535;RSQ=0.8164;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.56,-0.00 +1 110231777 rs4147565 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.02;AMR_AF=0.13;AN=2;ASN_AF=0.35;AVGPOST=0.8890;ERATE=0.0008;EUR_AF=0.16;LDAF=0.2167;RSQ=0.8265;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.99,-0.00 +1 110233138 rs74837985 G C 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.09;AMR_AF=0.48;AN=2;ASN_AF=0.73;AVGPOST=0.8714;ERATE=0.0084;EUR_AF=0.42;LDAF=0.4135;RSQ=0.8453;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110255324 rs201371910 A C 100 PASS AA=a;AC=1;AF=0.03;AFR_AF=0.03;AMR_AF=0.04;AN=2;ASN_AF=0.03;AVGPOST=0.9631;ERATE=0.0224;EUR_AF=0.02;LDAF=0.0391;RSQ=0.6368;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.700:-1.48,-0.01,-5.00 +1 110279701 rs7483 C T 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.09;AMR_AF=0.36;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3789;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110279821 rs1537234 C A 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.16;AMR_AF=0.48;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4886;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110295772 rs1887547 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.90;AMR_AF=0.67;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.61;LDAF=0.7501;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110300441 rs3818562 G A 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.16;AMR_AF=0.43;AN=2;ASN_AF=0.79;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4824;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110300504 rs10776700 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9852;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110456866 rs2297706 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.39;AMR_AF=0.22;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.3135;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110465935 rs200796309 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +1 110466338 rs333970 C A 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.13;AMR_AF=0.57;AN=2;ASN_AF=0.41;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4477;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 110466466 rs1058885 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.41;AMR_AF=0.35;AN=2;ASN_AF=0.61;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.34;LDAF=0.4257;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110466555 rs2229165 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.17;AMR_AF=0.08;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0975;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110466709 rs333971 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110466810 rs2229166 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.39;AMR_AF=0.21;AN=2;ASN_AF=0.52;AVGPOST=0.9985;ERATE=0.0007;EUR_AF=0.14;LDAF=0.3092;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110467745 rs333972 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 110581321 rs183730102 G A 100 PASS AA=G;AC=1;AF=0.0041;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0004;LDAF=0.0041;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110581780 rs1834 T G 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.20;AMR_AF=0.30;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2390;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 110612925 rs2274568 G A 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.80;AVGPOST=0.9915;ERATE=0.0013;EUR_AF=0.57;LDAF=0.6733;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +1 110738296 rs2784140 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.05;AMR_AF=0.39;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=0.46;LDAF=0.3209;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110740688 rs2761445 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.12;AMR_AF=0.40;AN=2;ASN_AF=0.32;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.47;LDAF=0.3400;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110766466 rs12411176 G A 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.16;AMR_AF=0.04;AN=2;ASN_AF=0.10;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0809;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 110882444 rs814771 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.95;AMR_AF=0.82;AN=2;ASN_AF=0.78;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8000;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.80,-0.00 +1 110950462 rs11102099 G A 100 PASS AA=G;AC=2;AF=0.08;AFR_AF=0.11;AMR_AF=0.17;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0773;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +1 110998854 rs7514102 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.36;AMR_AF=0.51;AN=2;ASN_AF=0.58;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4658;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 111059825 rs3768457 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.09;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.22;LDAF=0.1840;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 111060669 rs1281175 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.52;AMR_AF=0.73;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6655;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 111061011 rs3748731 C A 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.19;AMR_AF=0.23;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2066;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 111061062 rs1281174 T C 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.52;AMR_AF=0.73;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6654;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 111441829 rs1803259 C T 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.33;AMR_AF=0.70;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5896;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 111726213 rs694180 A G 100 PASS AA=a;AC=2;AF=0.72;AFR_AF=0.85;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.65;LDAF=0.7166;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 111737183 rs660173 C T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.82;AMR_AF=0.77;AN=2;ASN_AF=0.66;AVGPOST=0.9832;ERATE=0.0077;EUR_AF=0.66;LDAF=0.7113;RSQ=0.9716;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 111770423 rs755467 T G 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.68;AMR_AF=0.70;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6851;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 111778241 rs2764544 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9648;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 111778701 rs200826910 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 111778824 rs2251608 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.55;AMR_AF=0.68;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6453;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 111783996 rs2494007 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 111784816 rs11102221 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.39;AMR_AF=0.31;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2537;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 111862903 rs138227985 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 111957311 rs10067 G C 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.38;AMR_AF=0.16;AN=2;ASN_AF=0.42;AVGPOST=0.9997;ERATE=0.0152;EUR_AF=0.11;LDAF=0.2596;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 112020238 rs2211494 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 112029193 rs2252739 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.74;AMR_AF=0.86;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.84;LDAF=0.8099;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 112042632 rs2229155 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.75;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7994;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 112106444 rs1591712 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.88;AMR_AF=0.91;AN=2;ASN_AF=0.95;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9130;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 112234068 rs506070 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1426;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 112237915 rs7525307 A T 100 PASS AA=A;AC=1;AF=0.33;AFR_AF=0.16;AMR_AF=0.37;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.32;LDAF=0.3259;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.06 +1 112251902 rs563083 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 112269872 rs197434 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.96;AMR_AF=0.78;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8473;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 112281899 rs3738299 G T 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0572;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 112298829 rs197393 T C 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.73;AMR_AF=0.44;AN=2;ASN_AF=0.35;AVGPOST=0.9965;ERATE=0.0007;EUR_AF=0.42;LDAF=0.4734;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-2.32,-0.01,-2.04 +1 112298875 rs12741924 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.08;AVGPOST=0.9938;ERATE=0.0008;EUR_AF=0.05;LDAF=0.0550;RSQ=0.9533;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-0.19,-0.46,-2.48 +1 112303237 rs3754025 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0531;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 112303791 rs17569368 A T 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.09;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0530;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 112308953 rs197412 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.73;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4753;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 112308972 rs197413 G A 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.75;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.42;LDAF=0.4788;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 112991698 rs2256883 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.36;AMR_AF=0.59;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5251;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 112999227 rs1175641 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.94;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.9265;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 113197203 rs3790599 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.05;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0837;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 113202417 rs2932536 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.52;AMR_AF=0.58;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4730;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 113234456 rs2932532 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.51;AMR_AF=0.58;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4699;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 113238201 rs17030647 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.08;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0740;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 113239478 rs2999158 T C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.85;AMR_AF=0.81;AN=2;ASN_AF=0.85;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.67;LDAF=0.7808;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +1 113242488 rs3013431 C T 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.52;AMR_AF=0.64;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5150;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 113246229 rs937053 T A 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.45;AMR_AF=0.45;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.53;LDAF=0.4292;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 113252868 rs148123745 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 113255389 rs10857971 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9702;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 113456546 rs1049434 A T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.90;AMR_AF=0.53;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6577;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 113460683 rs74411643 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.20;AMR_AF=0.35;AN=2;ASN_AF=0.52;AVGPOST=0.9883;ERATE=0.0235;EUR_AF=0.28;LDAF=0.3392;RSQ=0.9793;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 113636924 rs1216802 T C 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.48;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8665;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +1 113657092 rs1216793 A C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.67;AMR_AF=0.97;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9122;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 113658887 rs1216791 G A 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.51;AMR_AF=0.79;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7939;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 114301335 rs61817589 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2902;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 114377568 rs2476601 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.90;LDAF=0.9575;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 114424601 rs1217381 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 114438123 rs17031980 G C 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.07;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0256;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 114443035 rs3789613 C G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.08;AMR_AF=0.43;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4168;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 114448389 rs11552449 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2766;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 114449662 rs3761936 T C 100 PASS AA=T;AC=2;AF=0.28;AFR_AF=0.03;AMR_AF=0.31;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2774;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 114449829 rs11102701 T A 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.47;AVGPOST=0.9891;ERATE=0.0136;EUR_AF=0.18;LDAF=0.2388;RSQ=0.9754;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.70 +1 114450585 rs200022270 A T 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.13;AN=2;ASN_AF=0.25;AVGPOST=0.9645;ERATE=0.1041;EUR_AF=0.15;LDAF=0.1726;RSQ=0.8888;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 114515717 rs2358996 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.57;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9990;ERATE=0.0015;EUR_AF=0.43;LDAF=0.4876;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 114641685 rs2774285 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.95;AMR_AF=0.69;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.8332;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 114680310 rs41274114 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1706;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 114948281 rs6537825 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.60;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.94;LDAF=0.8389;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 114976224 rs12132214 A C 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.14;LDAF=0.0685;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 115119392 rs41274118 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2001;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 115144703 rs28398 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 115161140 rs12145066 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.18;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1335;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 115168600 rs7541738 A T 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.02;AMR_AF=0.18;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1325;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 115399940 rs360614 T G 100 PASS AA=T;AC=2;AF=0.37;AFR_AF=0.17;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.3720;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 115401136 rs360615 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9913;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +1 115576023 rs10776792 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9849;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 115601615 rs7523818 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.9548;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 115604798 rs10776795 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.30;AMR_AF=0.36;AN=2;ASN_AF=0.46;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.28;LDAF=0.3446;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.06,-0.92 +1 115829313 rs6330 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.16;AMR_AF=0.39;AN=2;ASN_AF=0.15;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.47;LDAF=0.3059;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 116206423 rs4839469 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.05;AMR_AF=0.21;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1331;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 116224940 rs10754330 C A 100 PASS AA=A;AC=1;AF=0.68;AFR_AF=0.54;AMR_AF=0.75;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6778;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 116243877 rs7413162 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.46;AMR_AF=0.45;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.41;LDAF=0.4175;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 116283343 rs9428083 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.25;AMR_AF=0.78;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.86;LDAF=0.6636;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 116311198 rs4074537 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9671;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.52,-0.00 +1 116534852 rs4046190 C T 100 PASS AA=C;AC=1;AF=0.45;AFR_AF=0.14;AMR_AF=0.50;AN=2;ASN_AF=0.45;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4509;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 116569530 rs2488429 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.86;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9090;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 116577981 rs1935828 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9671;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 116931225 rs10924077 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.50;AMR_AF=0.10;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.1440;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 116931507 rs12079355 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.43;AMR_AF=0.09;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.1271;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 116931628 rs12079419 C A 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.47;AMR_AF=0.09;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.1348;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 116933372 rs12130872 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.73;AMR_AF=0.11;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.2075;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 116947051 rs9567 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.17;AMR_AF=0.08;AN=2;ASN_AF=0.03;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0608;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 117122130 rs6703791 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.36;AMR_AF=0.29;AN=2;ASN_AF=0.55;AVGPOST=0.9987;ERATE=0.0088;EUR_AF=0.16;LDAF=0.3293;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 117487710 rs10159095 A G 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.65;AMR_AF=0.85;AN=2;ASN_AF=0.81;AVGPOST=0.9613;ERATE=0.0160;EUR_AF=0.81;LDAF=0.7736;RSQ=0.9280;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 117487711 rs4546904 T A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.63;AMR_AF=0.85;AN=2;ASN_AF=0.81;AVGPOST=0.9582;ERATE=0.0186;EUR_AF=0.81;LDAF=0.7697;RSQ=0.9236;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 117552560 rs7554376 T C 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.17;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0704;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 117554421 rs3754112 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.06;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.31;LDAF=0.1701;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 117559726 rs2249265 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.93;AMR_AF=0.96;AN=2;ASN_AF=0.85;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9221;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 117560058 rs17235773 C G 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.06;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 117602960 rs2244501 C A 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.40;AMR_AF=0.88;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.7687;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 117603188 rs2244406 G T 100 PASS AA=T;AC=2;AF=0.72;AFR_AF=0.50;AMR_AF=0.78;AN=2;ASN_AF=0.94;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7234;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 117617705 rs998532 A G 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.11;AMR_AF=0.66;AN=2;ASN_AF=0.76;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5353;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 117618067 rs1289673 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.11;AMR_AF=0.67;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5356;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 117622286 rs2801939 A G 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.13;AMR_AF=0.69;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5686;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 117631391 rs1555792 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.71;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9003;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 117655093 rs41301281 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0301;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 117656088 rs1289658 A G 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.64;AMR_AF=0.47;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4159;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 117660608 rs1289655 C T 100 PASS AA=T;AC=2;AF=0.87;AFR_AF=0.78;AMR_AF=0.88;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.91;LDAF=0.8666;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 117660754 rs749902 C T 100 PASS AA=C;AC=2;AF=0.23;AFR_AF=0.21;AMR_AF=0.35;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2330;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 117690272 rs10754339 G A 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.28;AMR_AF=0.85;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.93;LDAF=0.7610;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 117957288 rs1289948 A G 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.88;AMR_AF=0.67;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7258;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 118165577 rs865443 C G 100 PASS 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AA=G;AC=2;AF=0.29;AFR_AF=0.15;AMR_AF=0.44;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2925;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 118584417 rs146889394 G A 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0019;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 118644430 rs10754367 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.70;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5351;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 118644524 rs17185492 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.17;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.22;LDAF=0.1371;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 119466275 rs4659129 A G 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.56;AMR_AF=0.62;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.6618;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 119584949 rs33960696 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0454;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 119923724 rs2275607 T C 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.12;AMR_AF=0.50;AN=2;ASN_AF=0.45;AVGPOST=0.9991;ERATE=0.0042;EUR_AF=0.53;LDAF=0.4115;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 119927680 rs6667679 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.68;AMR_AF=0.70;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6691;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 120057246 rs1047303 C A 100 PASS AA=C;AC=1;AF=0.80;AFR_AF=0.92;AMR_AF=0.76;AN=2;ASN_AF=0.91;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.67;LDAF=0.8032;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 120285546 rs543703 G A 100 PASS AA=.;AC=2;AF=0.70;AFR_AF=0.84;AMR_AF=0.76;AN=2;ASN_AF=0.63;AVGPOST=0.9990;ERATE=0.0026;EUR_AF=0.64;LDAF=0.7019;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 120293568 rs668156 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.16;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1252;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.22 +1 120438827 rs41276636 T C 100 PASS AA=T;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0045;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 120512104 rs2493409 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +1 144855866 rs1698582 A G 100 PASS AA=.;AC=1;AF=0.39;AFR_AF=0.34;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=0.9562;ERATE=0.0330;EUR_AF=0.38;LDAF=0.3949;RSQ=0.8212;SNPSOURCE=EXOME;THETA=0.0113;VT=SNP GT:DS:GL 1|0:0.700:-0.73,-0.09,-5.00 +1 144859720 rs678786 G C 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=1.00;AMR_AF=0.88;AN=2;ASN_AF=0.99;AVGPOST=0.9969;ERATE=0.0004;EUR_AF=0.82;LDAF=0.9177;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0142;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 144859889 rs111880480 G T 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.05;AMR_AF=0.01;AN=2;AVGPOST=0.9983;ERATE=0.0027;EUR_AF=0.01;LDAF=0.0171;RSQ=0.9570;SNPSOURCE=EXOME;THETA=0.0205;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144860026 rs1699819 G C 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5000;RSQ=0.1611;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144863401 rs71225704 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.01;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.18;LDAF=0.0970;RSQ=0.9916;SNPSOURCE=EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-4.40,-0.00,-5.00 +1 144865850 rs1613780 G T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144866643 rs1620560 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0999;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144866662 rs1064044 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.61;AVGPOST=0.9989;ERATE=0.0055;EUR_AF=0.50;LDAF=0.5304;RSQ=0.9860;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144868170 rs1628310 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0900;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144868204 rs1747951 A C 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0833;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144871738 rs1698605 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144871889 rs1698606 A C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144873840 rs1627335 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144873887 rs1699787 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144874038 rs1419160 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4999;RSQ=0.2998;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144874070 rs1610565 C T 100 PASS AA=c;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144874641 rs1610771 G C 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144874760 rs1610774 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144874950 rs1747957 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144877176 rs2762875 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0499;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144879090 rs1778120 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.21;AMR_AF=0.30;AN=2;ASN_AF=0.30;AVGPOST=0.9988;ERATE=0.0026;EUR_AF=0.26;LDAF=0.2659;RSQ=0.9963;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144879264 rs2798901 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.59;AMR_AF=0.78;AN=2;ASN_AF=0.96;AVGPOST=0.9847;ERATE=0.0226;EUR_AF=0.69;LDAF=0.7562;RSQ=0.9564;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +1 144879375 rs1747958 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144880832 rs12568796 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0022;EUR_AF=0.25;LDAF=0.2042;RSQ=0.9985;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144881389 rs1614163 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144882581 rs1699836 A G 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144882823 rs1698647 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144882912 rs1698646 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.07;AVGPOST=0.9970;ERATE=0.0050;EUR_AF=0.35;LDAF=0.2889;RSQ=0.9911;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144886063 rs1625285 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0499;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144886092 rs1343472 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.50;LDAF=0.5000;RSQ=0.1000;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144886197 rs1698624 A T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.50;LDAF=0.4999;RSQ=0.1098;SNPSOURCE=EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144909956 rs638260 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.29;AMR_AF=0.28;AN=2;ASN_AF=0.35;AVGPOST=0.9977;ERATE=0.0215;EUR_AF=0.27;LDAF=0.2972;RSQ=0.9928;SNPSOURCE=EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144912153 rs1628172 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.90;AMR_AF=0.87;AN=2;ASN_AF=0.95;AVGPOST=0.9976;ERATE=0.0006;EUR_AF=0.79;LDAF=0.8714;RSQ=0.9909;SNPSOURCE=EXOME;THETA=0.0091;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 144912233 rs1629011 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.38;AMR_AF=0.44;AN=2;ASN_AF=0.44;AVGPOST=0.9922;ERATE=0.0132;EUR_AF=0.43;LDAF=0.4259;RSQ=0.9548;SNPSOURCE=EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144915412 rs1698684 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.22;AMR_AF=0.43;AN=2;ASN_AF=0.50;AVGPOST=0.9952;ERATE=0.0053;EUR_AF=0.37;LDAF=0.3802;RSQ=0.9813;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +1 144915561 rs1778111 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144915624 rs1778112 G A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.38;AMR_AF=0.42;AN=2;ASN_AF=0.28;AVGPOST=0.9898;ERATE=0.0233;EUR_AF=0.40;LDAF=0.3701;RSQ=0.9622;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144916676 rs1698683 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.40;AMR_AF=0.26;AN=2;ASN_AF=0.04;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.35;LDAF=0.2659;RSQ=0.9994;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144916748 rs1747930 C G 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144917546 rs1698682 A G 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144917841 rs1698681 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144918957 rs1061308 T A 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144922171 rs1343470 C T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144922523 rs2455994 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.38;AMR_AF=0.26;AN=2;ASN_AF=0.04;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.35;LDAF=0.2614;RSQ=0.9995;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144922583 rs1359300 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144930571 rs2762866 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0046;EUR_AF=0.50;LDAF=0.5003;RSQ=0.2163;SNPSOURCE=EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144930596 rs2762867 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9995;ERATE=0.0032;EUR_AF=0.50;LDAF=0.5003;RSQ=0.1996;SNPSOURCE=EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144930940 rs2147326 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=0.9990;ERATE=0.0057;EUR_AF=0.50;LDAF=0.5000;RSQ=0.3262;SNPSOURCE=EXOME;THETA=0.0049;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144931087 rs41315684 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.12;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.24;LDAF=0.1584;RSQ=0.9938;SNPSOURCE=EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144931330 rs2762745 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144931392 rs2798893 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0000;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144931461 rs41315685 A T 100 PASS AA=A;AC=1;AF=0.20;AFR_AF=0.10;AMR_AF=0.24;AN=2;ASN_AF=0.19;AVGPOST=0.9981;ERATE=0.0028;EUR_AF=0.26;LDAF=0.2017;RSQ=0.9939;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 144931727 rs2985363 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.45;AMR_AF=0.27;AN=2;ASN_AF=0.07;AVGPOST=0.9875;ERATE=0.0051;EUR_AF=0.34;LDAF=0.2835;RSQ=0.9639;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-2.97,-0.00,-5.00 +1 144946768 rs2762733 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.50;LDAF=0.5000;RSQ=0.0500;SNPSOURCE=EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 144994658 rs1664022 C A 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.50;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0030;EUR_AF=0.50;LDAF=0.4987;RSQ=0.9839;SNPSOURCE=EXOME;THETA=0.0079;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 145015877 rs77741369 G T 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.04;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=0.35;LDAF=0.1924;RSQ=0.9919;SNPSOURCE=EXOME;THETA=0.0059;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 145016020 rs657162 T G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=0.93;AVGPOST=0.9977;ERATE=0.0017;EUR_AF=1.00;LDAF=0.9361;RSQ=0.9848;SNPSOURCE=EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 145075683 rs2762779 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.49;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9917;ERATE=0.0006;EUR_AF=0.50;LDAF=0.5006;RSQ=0.4575;SNPSOURCE=EXOME;THETA=0.0027;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 145075854 rs1663853 G C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.50;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9966;ERATE=0.0008;EUR_AF=0.50;LDAF=0.4993;RSQ=0.4653;SNPSOURCE=EXOME;THETA=0.0077;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 145075903 rs2596336 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.09;AMR_AF=0.37;AN=2;ASN_AF=0.40;AVGPOST=0.9772;ERATE=0.0012;EUR_AF=0.36;LDAF=0.3164;RSQ=0.9313;SNPSOURCE=EXOME;THETA=0.0260;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 145492385 rs200372109 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 145532549 rs1328584 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9881;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 145533175 rs11590105 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.34;LDAF=0.2235;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 145535921 rs2274617 T C 100 PASS AA=C;AC=1;AF=0.60;AFR_AF=0.72;AMR_AF=0.62;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.6042;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 145555653 rs6424379 C T 100 PASS AA=C;AC=2;AF=0.44;AFR_AF=0.40;AMR_AF=0.48;AN=2;ASN_AF=0.28;AVGPOST=0.9978;ERATE=0.0032;EUR_AF=0.57;LDAF=0.4413;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 145558824 rs17352281 A C 100 PASS AA=A;AC=2;AF=0.30;AFR_AF=0.29;AMR_AF=0.39;AN=2;ASN_AF=0.13;AVGPOST=0.9994;ERATE=0.0038;EUR_AF=0.39;LDAF=0.3017;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 145561116 rs11578772 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.0020;AMR_AF=0.07;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0527;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 145562293 rs11579366 G C 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.09;AMR_AF=0.51;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.3871;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 145562881 rs10910824 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.59;AMR_AF=0.52;AN=2;ASN_AF=0.74;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5609;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 145585317 rs4128488 A G 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.73;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0020;EUR_AF=1.00;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 145601861 rs9286837 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 146643555 rs1348316 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.75;AMR_AF=0.56;AN=2;ASN_AF=0.89;AVGPOST=0.9986;ERATE=0.0014;EUR_AF=0.43;LDAF=0.6413;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.25,-0.00 +1 146672906 rs894469 C T 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.83;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.91;LDAF=0.9209;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 146740502 rs17356233 C G 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1380;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 146740576 rs11576360 G A 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.61;AMR_AF=0.83;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7362;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 146747153 rs6680778 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.56;AMR_AF=0.82;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7207;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 146751782 rs7547279 A C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9653;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 146759306 rs6703892 T C 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.1379;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 146765454 rs2297752 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.40;AMR_AF=0.17;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2459;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 146767062 rs7516430 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.40;AMR_AF=0.17;AN=2;ASN_AF=0.33;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2461;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 146767149 rs4950394 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9652;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 147087721 rs3737843 T A 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.01;AMR_AF=0.36;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.56;LDAF=0.3661;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 147091972 rs3820129 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.08;AVGPOST=0.9991;ERATE=0.0010;EUR_AF=0.43;LDAF=0.2185;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 147096794 rs867270 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.86;AMR_AF=0.90;AN=2;ASN_AF=0.68;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8239;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 147119273 rs1344 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.41;AMR_AF=0.63;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5014;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 147121977 rs6593795 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 147124310 rs2153463 T G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.77;AMR_AF=0.75;AN=2;ASN_AF=0.74;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7404;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 147131465 rs6674938 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7372;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 147131501 rs34675044 A T 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.2888;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 149905279 rs72692821 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.01;AMR_AF=0.27;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.14;LDAF=0.1766;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 149906413 rs11205303 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.27;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.38;LDAF=0.2647;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 149915754 rs3754041 G A 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0350;RSQ=0.9846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 150122493 rs4553237 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9918;ERATE=0.0009;EUR_AF=1.00;LDAF=0.9860;RSQ=0.7580;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-4.10,-0.54,-0.15 +1 150128425 rs1545762 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.33;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.7646;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150199123 rs7522034 G T 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.90;AMR_AF=0.43;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.44;LDAF=0.5590;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 150236107 rs41304255 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0238;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 150258838 rs1122967 C G 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.97;AMR_AF=0.67;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.55;LDAF=0.7221;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150259400 rs9126 A C 100 PASS AA=A;AC=2;AF=0.48;AFR_AF=0.38;AMR_AF=0.46;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.39;LDAF=0.4762;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150531008 rs10888382 T C 100 PASS AA=T;AC=2;AF=0.84;AFR_AF=0.60;AMR_AF=0.91;AN=2;ASN_AF=0.89;AVGPOST=0.9947;ERATE=0.0564;EUR_AF=0.94;LDAF=0.8423;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150531050 rs10749657 G A 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.85;AMR_AF=0.83;AN=2;ASN_AF=0.98;AVGPOST=0.9941;ERATE=0.0472;EUR_AF=0.86;LDAF=0.8802;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0118;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150531170 rs10749658 C T 100 PASS AA=T;AC=2;AF=0.93;AFR_AF=0.72;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0019;EUR_AF=1.00;LDAF=0.9350;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150679033 rs1336900 G A 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.25;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.3646;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150727539 rs2230061 G A 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.27;AMR_AF=0.43;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3519;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150771703 rs10788796 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.92;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9771;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150804429 rs10305704 A C 100 PASS AA=A;AC=2;AF=0.35;AFR_AF=0.26;AMR_AF=0.43;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3551;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +1 150808889 rs2228099 C G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.53;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4283;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150938616 rs267739 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9827;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150940357 rs6656535 G T 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.18;AMR_AF=0.44;AN=2;ASN_AF=0.38;AVGPOST=0.9958;ERATE=0.0038;EUR_AF=0.30;LDAF=0.3180;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150940358 rs59988025 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.16;AMR_AF=0.44;AN=2;ASN_AF=0.38;AVGPOST=0.9970;ERATE=0.0075;EUR_AF=0.29;LDAF=0.3099;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150941381 rs752376 C T 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.61;AMR_AF=0.53;AN=2;ASN_AF=0.45;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.4771;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150960350 rs7532008 A C 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.42;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4529;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 150970577 rs2925741 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9525;RSQ=0.9934;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150974162 rs771204 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.75;AMR_AF=0.88;AN=2;ASN_AF=0.83;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.83;LDAF=0.8195;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 150975108 rs771205 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.34;AMR_AF=0.94;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.7898;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151006539 rs3738476 C A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.81;AMR_AF=0.86;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8592;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151019180 rs6587553 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.69;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0022;EUR_AF=0.81;LDAF=0.8103;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151026815 rs2902810 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.67;AMR_AF=0.82;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8029;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151028234 rs11204767 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +1 151104950 rs10788800 G A 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.18;AMR_AF=0.74;AN=2;ASN_AF=0.89;AVGPOST=0.9928;ERATE=0.0012;EUR_AF=0.71;LDAF=0.6429;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.950:-0.48,-0.48,-0.48 +1 151105824 rs4971006 C G 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.52;AMR_AF=0.80;AN=2;ASN_AF=0.91;AVGPOST=0.9940;ERATE=0.0011;EUR_AF=0.81;LDAF=0.7681;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +1 151108137 rs4971007 T G 100 PASS AA=G;AC=2;AF=0.83;AFR_AF=0.78;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8314;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151288391 rs1752379 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9767;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151316161 rs1752386 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9767;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151372138 rs7172 G A 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.4949;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 151373200 rs2495391 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151374025 rs4603 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.05;AMR_AF=0.28;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1997;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 151377248 rs6667714 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151384733 rs3748550 G A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7756;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 151396037 rs2274534 A C 100 PASS AA=A;AC=1;AF=0.49;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0012;EUR_AF=0.84;LDAF=0.4922;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 151402045 rs6587577 A G 100 PASS AA=G;AC=1;AF=0.76;AFR_AF=0.79;AMR_AF=0.71;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7624;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 151501841 rs12044926 C G 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.07;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0891;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 151542099 rs3748610 G T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.57;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5439;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 151551320 rs3748608 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.30;AMR_AF=0.56;AN=2;ASN_AF=0.41;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.67;LDAF=0.5028;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 151679596 rs1308153 G A 100 PASS AA=.;AC=1;AF=0.14;AFR_AF=0.14;AMR_AF=0.13;AN=2;ASN_AF=0.33;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1446;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-1.36,-0.02,-5.00 +1 151679963 rs2280473 C T 100 PASS AA=.;AC=1;AF=0.20;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.23;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2023;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 151735545 rs1196455 A G 100 PASS AA=A;AC=2;AF=0.14;AFR_AF=0.13;AMR_AF=0.09;AN=2;ASN_AF=0.35;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.1360;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151773387 rs1521179 G A 100 PASS AA=G;AC=2;AF=0.13;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.32;AVGPOST=0.9992;ERATE=0.0003;LDAF=0.1347;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151773851 rs61746299 T A 100 PASS AA=T;AC=2;AF=0.13;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0003;LDAF=0.1340;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151801951 rs4845606 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.15;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1519;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 151820298 rs6587624 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151820324 rs6587625 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.87;AMR_AF=0.85;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.83;LDAF=0.7994;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151825991 rs7556386 G T 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.70;AMR_AF=0.60;AN=2;ASN_AF=0.64;AVGPOST=0.9983;ERATE=0.0063;EUR_AF=0.71;LDAF=0.6699;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151867560 rs3762427 G A 100 PASS AA=A;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.89;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9277;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 151881885 rs3748805 A C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.92;AMR_AF=0.88;AN=2;ASN_AF=0.95;AVGPOST=0.9928;ERATE=0.0010;EUR_AF=0.93;LDAF=0.9232;RSQ=0.9600;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-3.08,-0.47,-0.18 +1 152079989 rs1131471 T G 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.52;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5101;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152081921 rs2496253 G C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.48;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.42;LDAF=0.5004;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152084984 rs3134814 C G 100 PASS AA=c;AC=1;AF=0.05;AFR_AF=0.08;AMR_AF=0.06;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0503;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152085505 rs2515663 A C 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9922;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152185750 rs12729662 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.63;AVGPOST=0.9968;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3163;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152185780 rs41266116 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.38;AMR_AF=0.56;AN=2;ASN_AF=0.32;AVGPOST=0.9768;ERATE=0.0027;EUR_AF=0.69;LDAF=0.5033;RSQ=0.9727;SNPSOURCE=LOWCOV,EXOME;THETA=0.0107;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152186042 rs12751022 A G 100 PASS AA=G;AC=2;AF=0.52;AFR_AF=0.44;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=0.9505;ERATE=0.0360;EUR_AF=0.46;LDAF=0.5189;RSQ=0.9371;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.90,-0.06 +1 152186209 rs200517893 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.03;AVGPOST=0.9247;ERATE=0.0042;EUR_AF=0.17;LDAF=0.1578;RSQ=0.7948;SNPSOURCE=EXOME;THETA=0.0052;VT=SNP GT:DS:GL 0|1:0.850:-0.48,-0.48,-0.48 +1 152186218 rs146450966 A G 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.05;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9768;ERATE=0.0022;EUR_AF=0.0026;LDAF=0.0230;RSQ=0.6184;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:0.650:-0.48,-0.48,-0.48 +1 152186222 rs4845424 T C 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.34;AVGPOST=0.8441;ERATE=0.0180;EUR_AF=0.75;LDAF=0.5436;RSQ=0.7794;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.150:-0.48,-0.48,-0.48 +1 152187810 rs145371085 G A 100 PASS AA=-;AC=1;AF=0.62;AFR_AF=0.46;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.7432;ERATE=0.0738;EUR_AF=0.62;LDAF=0.5969;RSQ=0.5367;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.250:-0.59,-0.22,-0.87 +1 152188413 rs200760332 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.02;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=0.9670;ERATE=0.0006;EUR_AF=0.08;LDAF=0.1086;RSQ=0.8688;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-2.23,-0.07,-0.84 +1 152190835 rs144383071 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.59;AVGPOST=0.9960;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2684;RSQ=0.9940;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.88,-0.01,-1.92 +1 152190945 rs77376932 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.03;AMR_AF=0.32;AN=2;ASN_AF=0.58;AVGPOST=0.9851;ERATE=0.0005;EUR_AF=0.15;LDAF=0.2589;RSQ=0.9774;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-3.03,-0.14,-0.56 +1 152191709 rs6662450 C G 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.47;AMR_AF=0.63;AN=2;ASN_AF=0.36;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.5923;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152191806 rs148459733 G A 100 PASS AA=-;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0004;LDAF=0.0056;RSQ=0.9752;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152191879 rs10788828 G A 100 PASS AA=-;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6087;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152192114 rs7520249 C T 100 PASS AA=-;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6087;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152192293 rs7520375 C T 100 PASS AA=-;AC=1;AF=0.53;AFR_AF=0.41;AMR_AF=0.57;AN=2;ASN_AF=0.33;AVGPOST=0.9866;ERATE=0.0105;EUR_AF=0.74;LDAF=0.5321;RSQ=0.9836;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152192555 rs41266134 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.03;AMR_AF=0.33;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2666;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152192631 rs6587647 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6088;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152192687 rs6587648 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9557;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152192978 rs6587649 T C 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9556;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152193052 rs6587650 A G 100 PASS AA=a;AC=2;AF=0.93;AFR_AF=0.72;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9346;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152193121 rs6587651 G T 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.36;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6061;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152193291 rs6587652 G T 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.82;LDAF=0.6083;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152193544 rs7535536 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.47;AMR_AF=0.63;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.5923;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152193547 rs6587653 G A 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.81;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9556;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152193851 rs11204937 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.47;AMR_AF=0.63;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.5923;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152193990 rs11204938 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.47;AMR_AF=0.63;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.5924;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152195579 rs74127901 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.09;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3012;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152276149 rs77422831 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.32;AN=2;ASN_AF=0.58;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2606;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152276583 rs12083389 C G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.41;AMR_AF=0.23;AN=2;ASN_AF=0.44;AVGPOST=0.9363;ERATE=0.0129;EUR_AF=0.11;LDAF=0.2792;RSQ=0.8949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-4.22,-0.00,-5.00 +1 152276772 rs72697000 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.61;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2683;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0123;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152277055 rs2065955 C G 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.72;AMR_AF=0.38;AN=2;ASN_AF=0.60;AVGPOST=0.9896;ERATE=0.0053;EUR_AF=0.15;LDAF=0.4325;RSQ=0.9865;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.82,-0.00,-5.00 +1 152277168 rs3091276 A G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.54;AMR_AF=0.36;AN=2;ASN_AF=0.61;AVGPOST=0.9745;ERATE=0.0023;EUR_AF=0.17;LDAF=0.3976;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +1 152277345 rs2065956 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2615;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-1.39,-0.02 +1 152277396 rs6681433 T C 100 PASS AA=T;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3095;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152277717 rs9436066 C A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.67;AVGPOST=0.9864;ERATE=0.0019;EUR_AF=0.17;LDAF=0.4080;RSQ=0.9814;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.02,-1.47 +1 152277822 rs3126069 T C 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.04;AMR_AF=0.26;AN=2;ASN_AF=0.51;AVGPOST=0.9689;ERATE=0.0048;EUR_AF=0.10;LDAF=0.2206;RSQ=0.9522;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.650:-0.12,-0.61,-4.10 +1 152277826 rs2065957 A C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.44;AMR_AF=0.29;AN=2;ASN_AF=0.52;AVGPOST=0.9620;ERATE=0.0077;EUR_AF=0.10;LDAF=0.3146;RSQ=0.9508;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.600:-0.12,-0.61,-4.10 +1 152278689 rs57672167 C A 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.37;AMR_AF=0.37;AN=2;ASN_AF=0.63;AVGPOST=0.9511;ERATE=0.0085;EUR_AF=0.17;LDAF=0.3698;RSQ=0.9317;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +1 152278856 rs11582087 T G 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.25;AN=2;ASN_AF=0.41;AVGPOST=0.9822;ERATE=0.0006;EUR_AF=0.11;LDAF=0.1903;RSQ=0.9456;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.550:-0.13,-0.60,-5.00 +1 152279729 rs3126072 C T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.52;AMR_AF=0.37;AN=2;ASN_AF=0.63;AVGPOST=0.9938;ERATE=0.0061;EUR_AF=0.18;LDAF=0.4028;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +1 152279841 rs3126074 G C 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.63;AVGPOST=0.9980;ERATE=0.0008;EUR_AF=0.17;LDAF=0.3952;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.42 +1 152279920 rs55650366 A G 100 PASS AA=a;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3111;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152280032 rs71625200 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.56;AVGPOST=0.9941;ERATE=0.0009;EUR_AF=0.14;LDAF=0.2687;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152280170 rs71625201 C G 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.32;AN=2;ASN_AF=0.51;AVGPOST=0.9608;ERATE=0.0037;EUR_AF=0.17;LDAF=0.2699;RSQ=0.9255;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-0.53,-0.15,-3.47 +1 152280265 rs71625202 C G 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.53;AVGPOST=0.9744;ERATE=0.0005;EUR_AF=0.16;LDAF=0.2452;RSQ=0.9514;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 1|0:1.000:-0.48,-0.48,-0.48 +1 152280347 rs139476473 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.25;AN=2;ASN_AF=0.43;AVGPOST=0.9769;ERATE=0.0044;EUR_AF=0.12;LDAF=0.2019;RSQ=0.9449;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-2.01,-0.00,-3.62 +1 152280372 rs142776569 G A 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.40;AMR_AF=0.32;AN=2;ASN_AF=0.56;AVGPOST=0.9799;ERATE=0.0052;EUR_AF=0.13;LDAF=0.3349;RSQ=0.9725;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-4.00,-0.00,-5.00 +1 152280759 rs2338554 A G 100 PASS AA=a;AC=1;AF=0.28;AFR_AF=0.42;AMR_AF=0.26;AN=2;ASN_AF=0.38;AVGPOST=0.9893;ERATE=0.0199;EUR_AF=0.12;LDAF=0.2802;RSQ=0.9738;SNPSOURCE=EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152280782 rs2184953 A G 100 PASS AA=g;AC=1;AF=0.46;AFR_AF=0.74;AMR_AF=0.39;AN=2;ASN_AF=0.63;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.18;LDAF=0.4603;RSQ=0.9990;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152280864 rs2184954 A G 100 PASS AA=g;AC=1;AF=0.35;AFR_AF=0.40;AMR_AF=0.33;AN=2;ASN_AF=0.57;AVGPOST=0.9936;ERATE=0.0007;EUR_AF=0.15;LDAF=0.3455;RSQ=0.9913;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152281039 rs7522925 G A 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.38;AMR_AF=0.30;AN=2;ASN_AF=0.42;AVGPOST=0.9982;ERATE=0.0071;EUR_AF=0.13;LDAF=0.2906;RSQ=0.9946;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152281479 rs3126079 G T 100 PASS AA=t;AC=1;AF=0.46;AFR_AF=0.74;AMR_AF=0.39;AN=2;ASN_AF=0.63;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.18;LDAF=0.4595;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.89 +1 152281690 rs12407748 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.55;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.15;LDAF=0.2515;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152281948 rs12405241 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2629;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152282267 rs12405278 G A 100 PASS AA=g;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2625;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152282311 rs12407807 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.59;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2730;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152282829 rs138596526 C G 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0046;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152282917 rs11204978 G T 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.58;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2620;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152283236 rs11581433 T C 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.30;AN=2;ASN_AF=0.55;AVGPOST=0.9945;ERATE=0.0025;EUR_AF=0.15;LDAF=0.2694;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152283283 rs11586631 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.01;AMR_AF=0.29;AN=2;ASN_AF=0.52;AVGPOST=0.9958;ERATE=0.0004;EUR_AF=0.12;LDAF=0.2317;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.90 +1 152283862 rs58001094 G C 100 PASS AA=g;AC=1;AF=0.37;AFR_AF=0.53;AMR_AF=0.34;AN=2;ASN_AF=0.55;AVGPOST=0.9817;ERATE=0.0194;EUR_AF=0.15;LDAF=0.3744;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152283975 rs66831674 A G 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.45;AMR_AF=0.34;AN=2;ASN_AF=0.58;AVGPOST=0.9878;ERATE=0.0008;EUR_AF=0.16;LDAF=0.3665;RSQ=0.9823;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-4.40,-0.00,-5.00 +1 152284854 rs3120653 A G 100 PASS AA=-;AC=1;AF=0.40;AFR_AF=0.54;AMR_AF=0.36;AN=2;ASN_AF=0.58;AVGPOST=0.9955;ERATE=0.0005;EUR_AF=0.17;LDAF=0.3943;RSQ=0.9931;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152285082 rs144821977 C G 100 PASS AA=-;AC=1;AF=0.0046;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0046;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152285099 rs74129461 C T 100 PASS AA=-;AC=1;AF=0.28;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.58;AVGPOST=0.9913;ERATE=0.0021;EUR_AF=0.17;LDAF=0.2845;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152285930 rs11584340 G A 100 PASS AA=-;AC=1;AF=0.31;AFR_AF=0.15;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3130;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152286002 rs2011331 T C 100 PASS AA=-;AC=1;AF=0.40;AFR_AF=0.49;AMR_AF=0.38;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3974;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152286032 rs11588170 C T 100 PASS AA=-;AC=1;AF=0.26;AFR_AF=0.02;AMR_AF=0.33;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2614;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152286367 rs41267154 C A 100 PASS AA=-;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3094;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152323132 rs12568784 G T 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2989;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152324002 rs141384852 T C 100 PASS AA=t;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.0013;LDAF=0.0029;RSQ=0.9552;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152325732 rs12022217 G A 100 PASS AA=g;AC=1;AF=0.30;AFR_AF=0.29;AMR_AF=0.34;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2989;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152326843 rs78399057 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.0020;AMR_AF=0.11;AN=2;ASN_AF=0.25;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.0026;LDAF=0.0837;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152329369 rs2282302 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.21;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.21;LDAF=0.1654;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152329435 rs2282303 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.34;AMR_AF=0.36;AN=2;ASN_AF=0.50;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.3164;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152331240 rs3818831 G A 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.42;AMR_AF=0.36;AN=2;ASN_AF=0.49;AVGPOST=0.9995;ERATE=0.0006;EUR_AF=0.15;LDAF=0.3353;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152382062 rs10888486 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.02;AMR_AF=0.30;AN=2;ASN_AF=0.44;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2202;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152382120 rs3829868 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.30;AN=2;ASN_AF=0.45;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2317;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152384759 rs7521839 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2765;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152484129 rs2105117 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.33;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.63;LDAF=0.5566;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152487979 rs2282296 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.16;AMR_AF=0.57;AN=2;ASN_AF=0.64;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5159;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.03,-0.00 +1 152488063 rs1053588 C T 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.48;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9963;ERATE=0.0007;EUR_AF=0.63;LDAF=0.5976;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +1 152538358 rs17659359 G C 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.30;AN=2;ASN_AF=0.27;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2479;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152538717 rs77965260 G A 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0005;LDAF=0.0010;RSQ=0.8118;SNPSOURCE=EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152552285 rs512208 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.14;AMR_AF=0.28;AN=2;ASN_AF=0.33;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3000;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.06,-0.00,-5.00 +1 152552461 rs4845313 C A 100 PASS AA=c;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.28;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2303;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152636843 rs9793541 A T 100 PASS AA=a;AC=1;AF=0.14;AFR_AF=0.01;AMR_AF=0.19;AN=2;ASN_AF=0.03;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.30;LDAF=0.1441;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152681543 rs1332496 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152732174 rs944683 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.15;AMR_AF=0.21;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1961;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152732436 rs4845480 G C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.60;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5128;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152732567 rs16834461 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.35;AMR_AF=0.25;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2482;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152733301 rs4329520 T A 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.60;AMR_AF=0.54;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152759950 rs11205106 A G 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.71;AMR_AF=0.52;AN=2;ASN_AF=0.40;AVGPOST=0.9672;ERATE=0.0067;EUR_AF=0.46;LDAF=0.5078;RSQ=0.9544;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.78,-0.01 +1 152770521 rs41268492 G A 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.39;AMR_AF=0.36;AN=2;ASN_AF=0.34;AVGPOST=0.9427;ERATE=0.0117;EUR_AF=0.25;LDAF=0.3245;RSQ=0.9162;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.40,-0.02 +1 152770589 rs11485496 A G 100 PASS AA=G;AC=2;AF=0.35;AFR_AF=0.45;AMR_AF=0.37;AN=2;ASN_AF=0.37;AVGPOST=0.9380;ERATE=0.0227;EUR_AF=0.25;LDAF=0.3504;RSQ=0.9076;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.04,-0.04 +1 152777574 rs1048534 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.14;AMR_AF=0.22;AN=2;ASN_AF=0.33;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1902;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 152777868 rs36107483 A G 100 PASS AA=A;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.26;AN=2;ASN_AF=0.03;AVGPOST=0.9947;ERATE=0.0045;EUR_AF=0.36;LDAF=0.2159;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152882610 rs2229496 A G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.70;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3912;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152883608 rs7545413 G A 100 PASS AA=g;AC=2;AF=0.39;AFR_AF=0.70;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3912;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.42,-0.02 +1 152883680 rs7535306 A G 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.70;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3912;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.99,-0.05 +1 152883711 rs7545520 G C 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.70;AMR_AF=0.28;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3912;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +1 152944594 rs3170863 C T 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.81;AMR_AF=0.55;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6399;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 152957832 rs1611762 C A 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.48;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=0.9924;ERATE=0.0058;EUR_AF=0.53;LDAF=0.5361;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152957887 rs1611764 G A 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.65;AMR_AF=0.50;AN=2;ASN_AF=0.65;AVGPOST=0.9916;ERATE=0.0080;EUR_AF=0.53;LDAF=0.5804;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152975495 rs2075739 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.52;AMR_AF=0.48;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5549;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152975763 rs1977734 C A 100 PASS AA=-;AC=1;AF=0.51;AFR_AF=0.48;AMR_AF=0.46;AN=2;ASN_AF=0.60;AVGPOST=0.9441;ERATE=0.0200;EUR_AF=0.48;LDAF=0.4996;RSQ=0.9035;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:0.900:-0.09,-0.74,-5.00 +1 152975829 rs1970328 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.52;AMR_AF=0.48;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.5548;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 152975941 rs1055935 C G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.73;AMR_AF=0.49;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6019;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153004778 rs3820141 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5192;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153004809 rs3181787 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.51;LDAF=0.5191;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153004848 rs3795381 T C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5192;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153004853 rs3795382 C T 100 PASS AA=c;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5192;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153004983 rs12195 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.46;AMR_AF=0.46;AN=2;ASN_AF=0.62;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.51;LDAF=0.5209;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153012765 rs1846857 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.14;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.0013;LDAF=0.1733;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-1.96,-0.01,-1.74 +1 153066072 rs3737865 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.18;AMR_AF=0.17;AN=2;ASN_AF=0.42;AVGPOST=0.9930;ERATE=0.0255;EUR_AF=0.05;LDAF=0.1977;RSQ=0.9860;SNPSOURCE=EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153066262 rs1933388 T C 100 PASS AA=t;AC=1;AF=0.44;AFR_AF=0.52;AMR_AF=0.35;AN=2;ASN_AF=0.54;AVGPOST=0.9853;ERATE=0.0413;EUR_AF=0.35;LDAF=0.4400;RSQ=0.9705;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153085029 rs74133286 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.37;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1287;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153085232 rs72480208 A C 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.08;AMR_AF=0.13;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1440;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153122620 rs513555 T C 100 PASS AA=C;AC=1;AF=0.58;AFR_AF=0.51;AMR_AF=0.56;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.55;LDAF=0.5763;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153277423 rs843971 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.44;AMR_AF=0.45;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.38;LDAF=0.4502;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 153314153 rs3006448 C A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.73;AMR_AF=0.86;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 153315579 rs3014863 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.90;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9237;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 153317723 rs3006453 T C 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.05;LDAF=0.0241;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153320334 rs3006457 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.73;AMR_AF=0.86;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8478;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 153320372 rs3006458 T G 100 PASS AA=G;AC=2;AF=0.79;AFR_AF=0.68;AMR_AF=0.85;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7866;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 153431406 rs3014837 C G 100 PASS AA=.;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0011;EUR_AF=0.96;LDAF=0.9775;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 153517172 rs1050923 T C 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.26;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0919;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153520138 rs41265162 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.41;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1275;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153520203 rs41265164 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.41;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1275;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153520784 rs28718953 C A 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.36;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1204;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153520790 rs28594230 G C 100 PASS AA=c;AC=1;AF=0.14;AFR_AF=0.45;AMR_AF=0.10;AN=2;ASN_AF=0.03;AVGPOST=0.9982;ERATE=0.0004;EUR_AF=0.04;LDAF=0.1420;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153520804 rs28452456 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.37;AMR_AF=0.09;AN=2;ASN_AF=0.03;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1205;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153520954 rs36022742 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.37;AMR_AF=0.09;AN=2;ASN_AF=0.02;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1165;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153533898 rs8401 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.56;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1595;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153534027 rs1047325 C T 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.42;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1253;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153588279 rs9792967 G A 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.08;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4570;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 153588340 rs11548103 C T 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.21;AMR_AF=0.28;AN=2;ASN_AF=0.32;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.48;LDAF=0.3442;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153609039 rs4845557 T C 100 PASS AA=C;AC=1;AF=0.62;AFR_AF=0.60;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6202;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 153636472 rs4515830 T C 100 PASS AA=T;AC=1;AF=0.48;AFR_AF=0.20;AMR_AF=0.60;AN=2;ASN_AF=0.67;AVGPOST=0.9904;ERATE=0.0235;EUR_AF=0.46;LDAF=0.4825;RSQ=0.9872;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 153636860 rs4351684 A G 100 PASS AA=G;AC=1;AF=0.64;AFR_AF=0.69;AMR_AF=0.73;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6380;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 153743234 rs6675978 T C 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.29;AMR_AF=0.35;AN=2;ASN_AF=0.71;AVGPOST=0.9989;ERATE=0.0075;EUR_AF=0.42;LDAF=0.4529;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 153790501 rs4363451 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.11;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2719;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153906397 rs11264621 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.60;AMR_AF=0.66;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.50;LDAF=0.6649;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153909069 rs1043608 G C 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=0.9984;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2761;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153913699 rs1110165 T G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.39;AN=2;ASN_AF=0.30;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2810;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153913770 rs2252508 A G 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.72;AMR_AF=0.67;AN=2;ASN_AF=0.95;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6909;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153920564 rs10559 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=0.9986;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2769;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153926078 rs11264680 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.12;AMR_AF=0.39;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2774;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153933063 rs148164856 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153941514 rs11264743 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.10;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2697;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153954674 rs10908578 T C 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.65;AMR_AF=0.67;AN=2;ASN_AF=0.95;AVGPOST=0.9994;ERATE=0.0006;EUR_AF=0.51;LDAF=0.6822;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 153994647 rs11264875 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2837;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154029450 rs11264964 G C 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.13;AMR_AF=0.37;AN=2;ASN_AF=0.30;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.30;LDAF=0.2745;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154061855 rs2066135 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154108387 rs3001361 G A 100 PASS AA=A;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9706;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154141908 rs4845364 A G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.85;AMR_AF=0.69;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.7308;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154186918 rs12408458 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.04;AMR_AF=0.47;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3341;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154296076 rs1194610 T C 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.52;AMR_AF=0.24;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2824;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154296812 rs41304552 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0171;RSQ=0.9657;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154302826 rs6691345 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.24;AMR_AF=0.16;AN=2;ASN_AF=0.15;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1605;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154310048 rs1760795 C G 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.15;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4444;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 154317153 rs1194587 C T 100 PASS AA=C;AC=1;AF=0.44;AFR_AF=0.13;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4383;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 154317418 rs1194586 T C 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.13;AMR_AF=0.52;AN=2;ASN_AF=0.62;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4392;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 154401679 rs8192282 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.03;AMR_AF=0.13;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1193;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154426947 rs4845374 T A 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.27;AMR_AF=0.14;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1696;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 154426970 rs2228145 A C 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.09;AMR_AF=0.48;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3192;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154437896 rs2229238 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.79;AMR_AF=0.83;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8067;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154459197 rs4845633 C G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9694;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154474131 rs4845635 C G 100 PASS AA=c;AC=1;AF=0.81;AFR_AF=0.62;AMR_AF=0.86;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.8103;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154479670 rs6664608 C T 100 PASS AA=c;AC=1;AF=0.55;AFR_AF=0.14;AMR_AF=0.65;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5475;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154516477 rs12750774 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.31;LDAF=0.1612;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154516571 rs6678164 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.70;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9296;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154524973 rs12144146 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.31;LDAF=0.1555;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 154544651 rs4845378 G T 100 PASS AA=G;AC=2;AF=0.11;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.15;AVGPOST=0.9926;ERATE=0.0006;EUR_AF=0.10;LDAF=0.1058;RSQ=0.9731;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:1.800:-5.00,-0.92,-0.06 +1 154573967 rs2229857 T C 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.37;AMR_AF=0.75;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6207;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154574820 rs1466731 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=0.9906;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154575040 rs1802645 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154580458 rs58655370 C A 100 PASS AA=c;AC=2;AF=0.25;AFR_AF=0.42;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9935;ERATE=0.0023;EUR_AF=0.19;LDAF=0.2492;RSQ=0.9879;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.850:-5.00,-0.62,-0.12 +1 154744807 rs1051614 C G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.62;LDAF=0.5345;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154744852 rs1131820 A G 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.61;AMR_AF=0.81;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7867;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154924015 rs116114495 C T 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0233;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 154938214 rs61751623 C G 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0137;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +1 154987526 rs11264295 C T 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.44;AMR_AF=0.62;AN=2;ASN_AF=0.92;AVGPOST=0.9991;ERATE=0.0004;EUR_AF=0.44;LDAF=0.5947;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 154988957 rs2242195 A G 100 PASS AA=g;AC=2;AF=0.65;AFR_AF=0.46;AMR_AF=0.70;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.55;LDAF=0.6531;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155006091 rs10908453 A G 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.55;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5708;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155006999 rs6680600 C T 100 PASS AA=C;AC=2;AF=0.54;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5426;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155019710 rs11264300 A C 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.36;AMR_AF=0.53;AN=2;ASN_AF=0.90;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5319;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155026942 rs6427128 A C 100 PASS AA=C;AC=1;AF=0.90;AFR_AF=0.88;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.84;LDAF=0.8995;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 155030376 rs201599586 T G 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9135;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 155033308 rs11589479 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.14;AN=2;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.18;LDAF=0.0877;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 155033317 rs11264304 T C 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.47;AMR_AF=0.70;AN=2;ASN_AF=0.94;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7019;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 155106054 rs4390169 A G 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.39;AN=2;ASN_AF=0.14;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3071;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 155106227 rs4745 A T 100 PASS AA=A;AC=1;AF=0.31;AFR_AF=0.13;AMR_AF=0.39;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3066;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 155106550 rs9297 A G 100 PASS AA=a;AC=1;AF=0.51;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.86;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5141;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 155142229 rs4276914 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.67;AMR_AF=0.59;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6449;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 155149718 rs3814316 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.23;AMR_AF=0.50;AN=2;ASN_AF=0.81;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.38;LDAF=0.4783;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 155162067 rs4072037 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.66;AMR_AF=0.66;AN=2;ASN_AF=0.84;AVGPOST=0.9934;ERATE=0.0131;EUR_AF=0.59;LDAF=0.6804;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 155178782 rs760077 A T 100 PASS AA=T;AC=1;AF=0.69;AFR_AF=0.64;AMR_AF=0.70;AN=2;ASN_AF=0.83;AVGPOST=0.9951;ERATE=0.0004;EUR_AF=0.63;LDAF=0.6937;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.80 +1 155182164 rs2075570 C T 100 PASS AA=.;AC=1;AF=0.65;AFR_AF=0.62;AMR_AF=0.61;AN=2;ASN_AF=0.82;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.55;LDAF=0.6480;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.09,-0.74 +1 155205669 rs28559737 G T 100 PASS AA=.;AC=2;AF=0.95;AFR_AF=0.79;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9476;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +1 155294274 rs914616 A G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9962;ERATE=0.0008;EUR_AF=1.00;LDAF=0.9541;RSQ=0.9680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.10,-0.00 +1 155294772 rs4971075 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9326;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155408635 rs4971053 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.82;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9544;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155755097 rs822021 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9406;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155837865 rs822522 G C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9620;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155838267 rs822521 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9443;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155870416 rs1749409 G A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.44;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8044;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155880573 rs493446 C G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.45;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=0.9984;ERATE=0.0017;EUR_AF=0.90;LDAF=0.8069;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155903408 rs4661151 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.12;AMR_AF=0.56;AN=2;ASN_AF=0.17;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.65;LDAF=0.3910;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 155904177 rs2275079 T C 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.44;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8039;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +1 155912486 rs2152051 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.77;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9457;RSQ=0.9929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 155928232 rs2364404 T C 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.41;AMR_AF=0.91;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.7989;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156011444 rs2297792 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.42;AMR_AF=0.51;AN=2;ASN_AF=0.13;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4186;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156025096 rs7541 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.03;AMR_AF=0.13;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0795;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156035664 rs146658867 C G 100 PASS AA=C;AC=1;AF=0.0023;AMR_AF=0.0028;AN=2;ASN_AF=0.0035;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.0026;LDAF=0.0025;RSQ=0.9274;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +1 156105028 rs538089 T C 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=0.9951;ERATE=0.0011;EUR_AF=0.09;LDAF=0.1603;RSQ=0.9898;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156105928 rs534807 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.48;AMR_AF=0.11;AN=2;ASN_AF=0.02;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.09;LDAF=0.1619;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156106185 rs505058 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.71;AMR_AF=0.12;AN=2;ASN_AF=0.02;AVGPOST=0.9995;ERATE=0.0011;EUR_AF=0.09;LDAF=0.2145;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156106863 rs553016 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.44;AMR_AF=0.10;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1505;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156146640 rs41265017 G A 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0307;RSQ=0.9935;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156146689 rs41265019 G A 100 PASS AA=g;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0078;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156287360 rs2249790 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2523;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156314440 rs41265041 T G 100 PASS AA=T;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.01;LDAF=0.0093;RSQ=0.9859;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156446242 rs2274316 C A 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.24;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5690;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +1 156446903 rs2274317 T C 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.24;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5690;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156450740 rs1925950 G A 100 PASS AA=G;AC=2;AF=0.57;AFR_AF=0.24;AMR_AF=0.61;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.5694;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156503541 rs6699212 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.30,-0.00 +1 156520173 rs1778819 T A 100 PASS AA=a;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9899;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +1 156526387 rs11264498 C G 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.17;AMR_AF=0.57;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.63;LDAF=0.4730;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156526444 rs2488269 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9722;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156532344 rs7548309 T G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.65;AMR_AF=0.64;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6366;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156532908 rs16837492 C A 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.60;AMR_AF=0.64;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.6261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156532977 rs1171547 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9721;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156534525 rs4661184 A C 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.43;AMR_AF=0.62;AN=2;ASN_AF=0.48;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.71;LDAF=0.5740;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 156536133 rs4382715 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9721;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156536221 rs2066377 G C 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9721;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156536251 rs947662 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9720;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156536353 rs947663 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9721;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156539154 rs6427319 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9927;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 156561651 rs7516274 G C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.96;LDAF=0.9455;RSQ=0.9909;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.80,-0.00 +1 156562008 rs1925949 G A 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9442;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 156562143 rs942959 G A 100 PASS AA=g;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9442;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156563375 rs6427321 G A 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9442;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156563726 rs6427322 A C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9442;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156563813 rs6668178 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9442;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156563852 rs942963 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9443;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156563898 rs1270 T C 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.88;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9443;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156594347 rs116317850 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0239;RSQ=0.9769;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156622252 rs1056695 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.23;AMR_AF=0.33;AN=2;ASN_AF=0.34;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3301;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.10 +1 156626920 rs7524611 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=0.98;AVGPOST=0.9787;ERATE=0.0126;EUR_AF=0.96;LDAF=0.9715;RSQ=0.7091;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.25,-0.00 +1 156639753 rs11582300 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.40;AMR_AF=0.68;AN=2;ASN_AF=0.85;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6465;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +1 156640156 rs3748570 G A 100 PASS AA=A;AC=2;AF=0.73;AFR_AF=0.71;AMR_AF=0.71;AN=2;ASN_AF=0.87;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7297;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156640678 rs2886443 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.40;AMR_AF=0.67;AN=2;ASN_AF=0.85;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6508;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156670891 rs200568916 C A 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156697056 rs3795737 T C 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.25;AMR_AF=0.24;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.1604;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156705593 rs4311877 G C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.89;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156706559 rs8658 A C 100 PASS AA=C;AC=2;AF=0.83;AFR_AF=0.47;AMR_AF=0.85;AN=2;ASN_AF=0.99;AVGPOST=0.8708;ERATE=0.0293;EUR_AF=0.93;LDAF=0.8072;RSQ=0.7505;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 156707775 rs6670122 T G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9684;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 156713512 rs4437869 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.87;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9682;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 156752048 rs2274503 C G 100 PASS AA=C;AC=1;AF=0.67;AFR_AF=0.46;AMR_AF=0.68;AN=2;ASN_AF=0.80;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6691;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156784982 rs926103 T C 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.31;AMR_AF=0.65;AN=2;ASN_AF=0.81;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.66;LDAF=0.6171;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0044;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156785617 rs1800601 G A 100 PASS AA=A;AC=1;AF=0.67;AFR_AF=0.45;AMR_AF=0.69;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6654;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156785771 rs7546838 A G 100 PASS AA=A;AC=1;AF=0.63;AFR_AF=0.38;AMR_AF=0.65;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6305;RSQ=0.9993;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156785779 rs1800600 G A 100 PASS AA=G;AC=1;AF=0.68;AFR_AF=0.52;AMR_AF=0.69;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6841;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156785810 rs145574758 C G 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156814027 rs56252149 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.23;AMR_AF=0.15;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.16;LDAF=0.1646;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156814478 rs41267423 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.16;AMR_AF=0.12;AN=2;ASN_AF=0.16;AVGPOST=0.9976;ERATE=0.0077;EUR_AF=0.16;LDAF=0.1544;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0054;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156815921 rs12064115 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.10;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.10;LDAF=0.0957;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 156846233 rs6334 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.10;AMR_AF=0.21;AN=2;ASN_AF=0.34;AVGPOST=0.9984;ERATE=0.0005;EUR_AF=0.19;LDAF=0.2148;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156875092 rs4661074 G A 100 PASS AA=G;AC=2;AF=0.47;AFR_AF=0.12;AMR_AF=0.65;AN=2;ASN_AF=0.20;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.81;LDAF=0.4686;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156875097 rs4661075 G A 100 PASS AA=G;AC=2;AF=0.51;AFR_AF=0.25;AMR_AF=0.65;AN=2;ASN_AF=0.23;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.81;LDAF=0.5079;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156875107 rs2644590 C A 100 PASS AA=C;AC=2;AF=0.47;AFR_AF=0.11;AMR_AF=0.65;AN=2;ASN_AF=0.20;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.81;LDAF=0.4665;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 156876492 rs61744071 C T 100 PASS AA=C;AC=1;AF=0.0009;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 156877457 rs1952294 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 157485429 rs60516051 C G 100 PASS AA=C;AC=2;AF=0.06;AFR_AF=0.10;AMR_AF=0.06;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0562;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 157485504 rs115493285 G A 100 PASS AA=G;AC=2;AF=0.03;AFR_AF=0.0041;AMR_AF=0.05;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0316;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 157508882 rs6427384 C T 100 PASS AA=C;AC=2;AF=0.71;AFR_AF=0.34;AMR_AF=0.80;AN=2;ASN_AF=0.77;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.7098;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 157509025 rs2012199 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.73;AMR_AF=0.83;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.8318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 157514091 rs12036228 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.31;AMR_AF=0.20;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2093;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 157514097 rs6679793 A G 100 PASS AA=A;AC=2;AF=0.74;AFR_AF=0.43;AMR_AF=0.71;AN=2;ASN_AF=0.90;AVGPOST=0.9984;ERATE=0.0014;EUR_AF=0.84;LDAF=0.7408;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 157548669 rs1885561 T A 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.81;AMR_AF=0.40;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4438;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 157557957 rs11799853 T C 100 PASS AA=c;AC=1;AF=0.30;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3012;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 157567751 rs1361889 A G 100 PASS AA=a;AC=1;AF=0.80;AFR_AF=0.72;AMR_AF=0.83;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8043;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 157668390 rs7522061 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.66;AMR_AF=0.51;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.49;LDAF=0.5119;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 157668427 rs12140725 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1732;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 157670290 rs945635 C G 100 PASS AA=c;AC=1;AF=0.56;AFR_AF=0.90;AMR_AF=0.50;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5549;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 157768000 rs3811024 G C 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.32;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2386;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 157771880 rs4971154 C T 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.07;AMR_AF=0.47;AN=2;ASN_AF=0.56;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.50;LDAF=0.4164;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 157802979 rs2261295 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.85;AMR_AF=0.72;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.7724;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158058109 rs6427419 C A 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.02;AMR_AF=0.55;AN=2;ASN_AF=0.69;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4549;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 158224825 rs411089 C T 100 PASS AA=T;AC=2;AF=0.48;AFR_AF=0.72;AMR_AF=0.37;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.4817;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158226814 rs41310138 G A 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0142;RSQ=0.9827;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158324425 rs1065457 A G 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.88;AMR_AF=0.40;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.36;LDAF=0.5526;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158368315 rs60530245 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.12;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0983;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158368541 rs34465440 A G 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.43;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.3213;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158368846 rs6662382 T C 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.43;AMR_AF=0.27;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.32;LDAF=0.3213;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158390252 rs12239443 T G 100 PASS AA=G;AC=2;AF=0.31;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.19;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3130;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158390501 rs34616883 G A 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.18;AMR_AF=0.29;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.3048;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158436299 rs4657080 T C 100 PASS AA=N;AC=2;AF=0.60;AFR_AF=0.68;AMR_AF=0.49;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.63;LDAF=0.6042;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158450314 rs6679056 A G 100 PASS AA=a;AC=1;AF=0.55;AFR_AF=0.50;AMR_AF=0.45;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5448;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158450382 rs1418843 C T 100 PASS AA=c;AC=1;AF=0.47;AFR_AF=0.39;AMR_AF=0.39;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4736;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158517142 rs41273491 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2331;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158517353 rs16840314 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2276;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158549264 rs863360 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.42;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5343;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158549420 rs863361 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.65;AMR_AF=0.42;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5462;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158549492 rs863362 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.42;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5343;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158549511 rs863363 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.65;AMR_AF=0.42;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5462;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158577109 rs857685 A C 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2719;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158582646 rs2251969 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.46;AMR_AF=0.52;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5484;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158584091 rs952094 A G 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.47;AMR_AF=0.52;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5489;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158585230 rs2518491 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.08;AMR_AF=0.28;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2628;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158587390 rs857716 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.41;AMR_AF=0.52;AN=2;ASN_AF=0.61;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5366;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158587784 rs857717 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9995;RSQ=0.8803;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158607788 rs2518492 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9993;RSQ=0.6929;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158607935 rs857725 T G 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.13;AMR_AF=0.28;AN=2;ASN_AF=0.40;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2754;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158612236 rs863931 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.74;AMR_AF=0.55;AN=2;ASN_AF=0.61;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.60;LDAF=0.6229;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158618455 rs2246434 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.15;AMR_AF=0.26;AN=2;ASN_AF=0.38;AVGPOST=0.9961;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2599;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158619728 rs2482965 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9968;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158626378 rs857691 C T 100 PASS AA=T;AC=2;AF=0.42;AFR_AF=0.81;AMR_AF=0.31;AN=2;ASN_AF=0.38;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4200;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158631171 rs2518493 A C 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.15;AMR_AF=0.27;AN=2;ASN_AF=0.38;AVGPOST=0.9983;ERATE=0.0004;EUR_AF=0.25;LDAF=0.2680;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158647495 rs325996 A T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9598;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.49,-0.00 +1 158647522 rs703121 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.27;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5076;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158647631 rs325995 T A 100 PASS AA=A;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9597;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158647669 rs703122 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.27;AMR_AF=0.51;AN=2;ASN_AF=0.55;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5077;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158654852 rs857937 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.30;AMR_AF=0.52;AN=2;ASN_AF=0.55;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5146;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158655036 rs435080 G A 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158655162 rs2564859 C A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158656281 rs2564858 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.89;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9753;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158735595 rs857824 C T 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.76;AMR_AF=0.79;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7148;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 158735691 rs857825 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.76;AMR_AF=0.79;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 158735740 rs857826 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.76;AMR_AF=0.79;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 158735892 rs857827 A G 100 PASS AA=A;AC=1;AF=0.71;AFR_AF=0.76;AMR_AF=0.79;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7148;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 158736215 rs6666753 G A 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.68;AMR_AF=0.93;AN=2;ASN_AF=0.91;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.94;LDAF=0.8740;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158736445 rs1864346 C T 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.03;AMR_AF=0.32;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2839;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 158736517 rs1864347 A T 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.03;AMR_AF=0.32;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2838;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 158813819 rs857870 A G 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.29;AMR_AF=0.52;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5388;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158913532 rs4656498 C T 100 PASS AA=C;AC=1;AF=0.39;AFR_AF=0.12;AMR_AF=0.41;AN=2;ASN_AF=0.51;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.46;LDAF=0.3878;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 158985652 rs4262539 T C 100 PASS AA=.;AC=2;AF=0.07;AFR_AF=0.13;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0726;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 158988270 rs11539423 T C 100 PASS AA=T;AC=2;AF=0.04;AFR_AF=0.03;AMR_AF=0.07;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0389;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 159021506 rs62621173 C T 100 PASS AA=C;AC=2;AF=0.02;AFR_AF=0.02;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0252;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 159169641 rs862999 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.91;AMR_AF=0.70;AN=2;ASN_AF=0.94;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8287;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 159175193 rs3027016 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.10;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.17;LDAF=0.0770;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 159175354 rs12075 G A 100 PASS AA=A;AC=2;AF=0.54;AFR_AF=0.96;AMR_AF=0.58;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5388;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 159283746 rs11265165 T C 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.22;AMR_AF=0.11;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.2107;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 159284490 rs72713656 A C 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.12;AMR_AF=0.03;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0618;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 159409533 rs10908721 G A 100 PASS AA=A;AC=1;AF=0.91;AFR_AF=0.68;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9132;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 159409734 rs10908722 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9913;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 159409857 rs12048482 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.39;AMR_AF=0.56;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.4753;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 159505101 rs35393723 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1010;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 159505297 rs4656837 C T 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.34;AMR_AF=0.70;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.69;LDAF=0.5708;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 159558258 rs2808661 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.89;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.84;LDAF=0.9195;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 159684186 rs1417938 T A 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.08;AMR_AF=0.35;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2007;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 159785284 rs4411129 C G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.96;AMR_AF=0.83;AN=2;ASN_AF=0.80;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.70;LDAF=0.8025;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 159802627 rs2494480 A C 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.47;AMR_AF=0.10;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.2888;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 159825916 rs11587021 C T 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.04;AMR_AF=0.47;AN=2;ASN_AF=0.27;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3037;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-2.31,-0.00,-5.00 +1 159828128 rs2494504 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=1.00;AMR_AF=0.85;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0011;EUR_AF=0.87;LDAF=0.9168;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 159828746 rs2501337 G A 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.51;AMR_AF=0.70;AN=2;ASN_AF=0.70;AVGPOST=0.9977;ERATE=0.0010;EUR_AF=0.69;LDAF=0.6526;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 159842691 rs4460634 C G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.37;AMR_AF=0.68;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6271;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 159854251 rs16842789 T C 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.24;AMR_AF=0.06;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1120;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 159854392 rs2501325 C A 100 PASS AA=A;AC=2;AF=0.80;AFR_AF=0.84;AMR_AF=0.77;AN=2;ASN_AF=0.84;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.77;LDAF=0.8034;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 159858290 rs3795334 T A 100 PASS AA=A;AC=1;AF=0.14;AFR_AF=0.33;AMR_AF=0.08;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1408;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 159860259 rs2501320 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.36;LDAF=0.2171;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 159922369 rs2840583 C T 100 PASS AA=T;AC=2;AF=0.91;AFR_AF=0.80;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9053;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 159923111 rs2789417 T G 100 PASS AA=G;AC=2;AF=0.90;AFR_AF=0.77;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8995;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160062472 rs2295622 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.03;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1662;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160062727 rs2295621 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.05;AMR_AF=0.22;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.19;LDAF=0.1705;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160090674 rs2854246 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0497;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.13,-0.00 +1 160093222 rs2820581 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9524;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160097315 rs2295623 C A 100 PASS AA=C;AC=1;AF=0.09;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0910;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160100201 rs17846713 C G 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0191;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160124875 rs6427504 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.77;AMR_AF=0.70;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.7057;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160134205 rs11265338 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.37;AMR_AF=0.68;AN=2;ASN_AF=0.58;AVGPOST=0.9961;ERATE=0.0094;EUR_AF=0.65;LDAF=0.5724;RSQ=0.9946;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160136350 rs7529215 G A 100 PASS AA=g;AC=1;AF=0.47;AFR_AF=0.29;AMR_AF=0.53;AN=2;ASN_AF=0.48;AVGPOST=0.9976;ERATE=0.0022;EUR_AF=0.54;LDAF=0.4656;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160141196 rs625549 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160141268 rs12058214 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.38;AMR_AF=0.23;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2075;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160147502 rs731852 T G 100 PASS AA=T;AC=2;AF=0.78;AFR_AF=0.84;AMR_AF=0.77;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7783;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160151450 rs7519748 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.92;AMR_AF=0.78;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.8031;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160156027 rs12131640 C G 100 PASS AA=g;AC=1;AF=0.42;AFR_AF=0.24;AMR_AF=0.35;AN=2;ASN_AF=0.68;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.36;LDAF=0.4159;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160183100 rs8175359 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.03;LDAF=0.0115;RSQ=0.9750;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160265668 rs2887489 G C 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.05;LDAF=0.0224;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160275434 rs2066320 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9794;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160580549 rs3796504 G T 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0416;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160582248 rs11265449 C G 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.08;AMR_AF=0.36;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4155;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160604473 rs164288 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.02;AMR_AF=0.08;AN=2;ASN_AF=0.02;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0503;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160616768 rs12076998 G A 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.12;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0623;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160722063 rs181406695 C T 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0041;RSQ=0.9845;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 160722064 rs527342 A G 100 PASS AA=a;AC=2;AF=0.92;AFR_AF=0.78;AMR_AF=0.95;AN=2;ASN_AF=0.96;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.98;LDAF=0.9229;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160788131 rs3817407 T C 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.40;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.24;LDAF=0.3200;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160789196 rs537540 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9935;RSQ=0.9920;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160793442 rs474131 A G 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.73;AMR_AF=0.64;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.45;LDAF=0.6104;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160793560 rs509749 A G 100 PASS AA=G;AC=1;AF=0.63;AFR_AF=0.79;AMR_AF=0.64;AN=2;ASN_AF=0.71;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6261;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160793962 rs506081 G C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.73;AMR_AF=0.64;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6119;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160797514 rs576334 C G 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.69;AMR_AF=0.64;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6115;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160803802 rs11265493 A G 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.37;AMR_AF=0.57;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5132;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160849060 rs3766359 G A 100 PASS AA=g;AC=2;AF=0.60;AFR_AF=0.30;AMR_AF=0.67;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6011;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160849082 rs3820094 A G 100 PASS AA=G;AC=2;AF=0.64;AFR_AF=0.45;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6412;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160850936 rs2236515 T C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.61;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6773;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160851826 rs2274907 A T 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.34;AMR_AF=0.66;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6088;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160851894 rs2274908 G A 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.33;AMR_AF=0.66;AN=2;ASN_AF=0.72;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6066;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +1 160852022 rs2274909 C T 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.31;AMR_AF=0.66;AN=2;ASN_AF=0.72;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.68;LDAF=0.6014;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160920809 rs3829790 A G 100 PASS AA=A;AC=2;AF=0.51;AFR_AF=0.25;AMR_AF=0.61;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5128;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160920813 rs790059 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9767;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 160920966 rs6680969 C T 100 PASS AA=c;AC=2;AF=0.53;AFR_AF=0.34;AMR_AF=0.60;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5311;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +1 160969585 rs790056 C T 100 PASS AA=T;AC=1;AF=0.84;AFR_AF=0.93;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8396;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160971146 rs790055 A G 100 PASS AA=G;AC=1;AF=0.84;AFR_AF=0.91;AMR_AF=0.80;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.79;LDAF=0.8364;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 160990878 rs28365978 C T 100 PASS AA=C;AC=1;AF=0.59;AFR_AF=0.73;AMR_AF=0.52;AN=2;ASN_AF=0.63;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.50;LDAF=0.5893;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161017556 rs2774279 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2136;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161019040 rs3813609 G C 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.21;AMR_AF=0.48;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.63;LDAF=0.4305;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161022380 rs4396136 G A 100 PASS AA=A;AC=1;AF=0.79;AFR_AF=0.87;AMR_AF=0.75;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.79;LDAF=0.7893;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161047220 rs11265548 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.13;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.0923;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161049358 rs3820097 G A 100 PASS AA=A;AC=2;AF=0.86;AFR_AF=0.98;AMR_AF=0.88;AN=2;ASN_AF=0.68;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8566;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.34,-0.00 +1 161049509 rs35434391 G T 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9931;ERATE=0.0004;EUR_AF=0.14;LDAF=0.0629;RSQ=0.9557;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161088000 rs76502631 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0124;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161132821 rs1127525 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.04;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0201;RSQ=0.9949;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161163037 rs4233367 T C 100 PASS AA=C;AC=1;AF=0.69;AFR_AF=0.59;AMR_AF=0.67;AN=2;ASN_AF=0.92;AVGPOST=0.9993;ERATE=0.0021;EUR_AF=0.60;LDAF=0.6937;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161163633 rs3813622 C T 100 PASS AA=T;AC=1;AF=0.68;AFR_AF=0.59;AMR_AF=0.66;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.58;LDAF=0.6852;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161188649 rs41270849 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0244;RSQ=0.9878;SNPSOURCE=LOWCOV,EXOME;THETA=0.0133;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161479745 rs1801274 A G 100 PASS AA=.;AC=2;AF=0.43;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0012;EUR_AF=0.50;LDAF=0.4309;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 161495477 rs72633678 A T 100 PASS AA=.;AC=1;AF=0.66;AFR_AF=0.66;AMR_AF=0.66;AN=2;ASN_AF=0.67;AVGPOST=0.9822;ERATE=0.0088;EUR_AF=0.66;LDAF=0.6586;RSQ=0.9675;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161495885 rs404508 T C 100 PASS AA=.;AC=2;AF=0.81;AFR_AF=0.76;AMR_AF=0.75;AN=2;ASN_AF=0.93;AVGPOST=0.9979;ERATE=0.0008;EUR_AF=0.78;LDAF=0.8098;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.61,-0.12 +1 161514542 rs396991 A C 100 PASS AA=N;AC=1;AF=0.24;AFR_AF=0.22;AMR_AF=0.20;AN=2;ASN_AF=0.27;AVGPOST=0.9388;ERATE=0.0422;EUR_AF=0.27;LDAF=0.2431;RSQ=0.8846;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:0.850:-0.48,-0.48,-0.48 +1 161518172 rs147342954 C T 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.07;AMR_AF=0.30;AN=2;ASN_AF=0.18;AVGPOST=0.9393;ERATE=0.0031;EUR_AF=0.29;LDAF=0.2143;RSQ=0.8542;SNPSOURCE=EXOME;THETA=0.0068;VT=SNP GT:DS:GL 0|1:1.000:-1.57,-0.01,-5.00 +1 161518214 rs148181339 T C 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.15;AMR_AF=0.32;AN=2;ASN_AF=0.32;AVGPOST=0.8818;ERATE=0.0450;EUR_AF=0.19;LDAF=0.2737;RSQ=0.6842;SNPSOURCE=EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.02,-1.26 +1 161518757 rs56095771 T C 100 PASS AA=T;AC=1;AF=0.09;AFR_AF=0.08;AMR_AF=0.07;AN=2;ASN_AF=0.07;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0856;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-2.17,-0.00,-4.70 +1 161643025 rs145835719 C A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.09;AMR_AF=0.07;AN=2;ASN_AF=0.05;AVGPOST=0.9618;ERATE=0.0113;EUR_AF=0.07;LDAF=0.0754;RSQ=0.7970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0065;VT=SNP GT:DS:GL 1|0:0.600:-0.03,-1.12,-5.00 +1 161643798 rs1050501 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.25;AMR_AF=0.14;AN=2;ASN_AF=0.26;AVGPOST=0.9681;ERATE=0.0018;EUR_AF=0.12;LDAF=0.1931;RSQ=0.9184;SNPSOURCE=EXOME;THETA=0.0071;VT=SNP GT:DS:GL 0|1:1.050:-0.19,-0.45,-2.22 +1 161645010 rs6427615 C A 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.25;AMR_AF=0.12;AN=2;ASN_AF=0.24;AVGPOST=0.9950;ERATE=0.0009;EUR_AF=0.11;LDAF=0.1808;RSQ=0.9857;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-2.11,-0.01,-1.64 +1 161676970 rs1340978 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.58;AMR_AF=0.56;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6696;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 161681780 rs2275603 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.73;AMR_AF=0.40;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.4474;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161683136 rs11746 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.05;AMR_AF=0.37;AN=2;ASN_AF=0.26;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3159;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161695639 rs7520519 G T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.87;LDAF=0.9415;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 161696782 rs11585450 G C 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.06;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.51;LDAF=0.3423;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161696998 rs1875763 C G 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.12;AMR_AF=0.43;AN=2;ASN_AF=0.28;AVGPOST=0.9985;ERATE=0.0003;EUR_AF=0.51;LDAF=0.3479;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161697072 rs72704099 G C 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.61;AMR_AF=0.11;AN=2;ASN_AF=0.39;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.06;LDAF=0.2802;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161697149 rs16858529 G T 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.06;AMR_AF=0.03;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.02;LDAF=0.1239;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161721707 rs1063178 C T 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.47;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3615;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161722204 rs1063179 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.38;AMR_AF=0.08;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1655;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161751741 rs1058405 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.30;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2112;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 161823011 rs2257107 T A 100 PASS AA=T;AC=1;AF=0.44;AFR_AF=0.08;AMR_AF=0.49;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.72;LDAF=0.4388;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161928327 rs9482 A G 100 PASS AA=A;AC=1;AF=0.60;AFR_AF=0.44;AMR_AF=0.56;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.79;LDAF=0.5996;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161967681 rs2499836 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.56;AMR_AF=0.73;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6660;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 161976234 rs12022536 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.46;AMR_AF=0.81;AN=2;ASN_AF=0.48;AVGPOST=0.9991;ERATE=0.0006;EUR_AF=0.83;LDAF=0.6527;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 162313597 rs347278 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.76;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9328;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 162344102 rs2282397 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.18;AMR_AF=0.40;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.39;LDAF=0.3757;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 162344186 rs150773743 C T 100 PASS AA=C;AC=1;AF=0.0018;AMR_AF=0.0028;AN=2;AVGPOST=0.9997;ERATE=0.0007;EUR_AF=0.0040;LDAF=0.0020;RSQ=0.9475;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 162344390 rs164159 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 162345091 rs164181 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9479;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 162352941 rs11806859 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.09;AMR_AF=0.26;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2198;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 162367071 rs17852003 C T 100 PASS AA=c;AC=1;AF=0.31;AFR_AF=0.39;AMR_AF=0.32;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3071;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 162381833 rs66518016 C G 100 PASS AA=C;AC=1;AF=0.21;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.18;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.30;LDAF=0.2138;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 162722846 rs1632311 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 162729613 rs56351141 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0069;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 162740327 rs1780003 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.81;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9537;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 162743418 rs1355287 G T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=0.98;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9955;RSQ=0.9693;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 162766476 rs1780019 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.20;AMR_AF=0.60;AN=2;ASN_AF=0.56;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.80;LDAF=0.5696;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.46,-0.02 +1 163122528 rs1354939 G C 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.21;AMR_AF=0.69;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5521;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 163309219 rs1509022 A T 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.32;AMR_AF=0.43;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3780;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 163309302 rs2999852 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.69;AMR_AF=0.93;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9008;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 164529120 rs2275558 G A 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.65;AVGPOST=0.9470;ERATE=0.0023;EUR_AF=0.19;LDAF=0.3112;RSQ=0.9241;SNPSOURCE=LOWCOV,EXOME;THETA=0.0189;VT=SNP GT:DS:GL 1|0:1.000:-2.13,-0.00,-3.52 +1 164789444 rs1538488 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 165173216 rs1354509 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9756;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 165218792 rs10753668 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.35;AN=2;ASN_AF=0.55;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.25;LDAF=0.3165;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 165376043 rs283696 T C 100 PASS AA=T;AC=2;AF=0.86;AFR_AF=0.90;AMR_AF=0.82;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8597;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 165389285 rs157870 C G 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.60;AMR_AF=0.41;AN=2;ASN_AF=0.17;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3739;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 165398115 rs113471 T C 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.42;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2427;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 165651502 rs1913844 G C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.61;AMR_AF=0.75;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7363;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 165652273 rs1143659 A G 100 PASS AA=G;AC=2;AF=0.74;AFR_AF=0.61;AMR_AF=0.75;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7363;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 165667762 rs201651041 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9996;ERATE=0.0003;LDAF=0.0006;RSQ=0.7425;SNPSOURCE=EXOME;THETA=0.0061;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 165667781 rs12408101 T G 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.07;AMR_AF=0.27;AN=2;ASN_AF=0.01;AVGPOST=0.9924;ERATE=0.0008;EUR_AF=0.26;LDAF=0.1542;RSQ=0.9786;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 0|1:1.000:-2.11,-0.00,-3.80 +1 165859630 rs477033 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0103;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 165865478 rs11553301 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.02;AMR_AF=0.10;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.0923;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 166039898 rs41269662 C G 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.20;AMR_AF=0.31;AN=2;ASN_AF=0.26;AVGPOST=0.9997;ERATE=0.0022;EUR_AF=0.15;LDAF=0.2159;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 166905927 rs33958744 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.05;AMR_AF=0.17;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1110;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167088473 rs1410244 C A 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.41;AMR_AF=0.27;AN=2;ASN_AF=0.75;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.25;LDAF=0.4207;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167095163 rs267745 G C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.85;AMR_AF=0.50;AN=2;ASN_AF=0.89;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.44;LDAF=0.6580;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167095765 rs6668826 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.16;LDAF=0.3524;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.93 +1 167095881 rs3795605 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.28;AMR_AF=0.20;AN=2;ASN_AF=0.76;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.16;LDAF=0.3523;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167097739 rs2281959 C A 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.29;AMR_AF=0.32;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.4195;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167734793 rs763283 C T 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.13;AMR_AF=0.35;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2473;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167787265 rs12060498 C T 100 PASS AA=C;AC=2;AF=0.14;AFR_AF=0.20;AMR_AF=0.14;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1394;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +1 167792356 rs72697797 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0178;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167793670 rs1476074 C T 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.32;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4109;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 167814913 rs150156383 G T 100 PASS AA=G;AC=1;AF=0.0027;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0040;LDAF=0.0027;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 167815514 rs35398078 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.04;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0644;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 167817639 rs203795 A G 100 PASS AA=A;AC=2;AF=0.81;AFR_AF=0.93;AMR_AF=0.81;AN=2;ASN_AF=0.84;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.71;LDAF=0.8112;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 167825485 rs2071921 T C 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.45;AMR_AF=0.52;AN=2;ASN_AF=0.71;AVGPOST=0.9978;ERATE=0.0022;EUR_AF=0.41;LDAF=0.5165;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167825718 rs7537851 C T 100 PASS AA=T;AC=1;AF=0.23;AFR_AF=0.18;AMR_AF=0.24;AN=2;ASN_AF=0.21;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.2294;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167839578 rs67878347 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.05;AMR_AF=0.18;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.21;LDAF=0.1508;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 167849318 rs203847 A G 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.46;AMR_AF=0.29;AN=2;ASN_AF=0.14;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.32;LDAF=0.2984;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.42,-0.00 +1 167849327 rs203848 G A 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.47;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1577;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 167849414 rs203849 A G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.65;AMR_AF=0.45;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4845;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 167865871 rs16859886 G A 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.16;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0772;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 167887642 rs10918798 C T 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.23;AMR_AF=0.09;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1038;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 167893759 rs203861 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.65;AMR_AF=0.46;AN=2;ASN_AF=0.19;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3930;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 167906239 rs203788 A C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.1995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.90,-0.00 +1 168013850 rs11558511 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.17;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0009;EUR_AF=0.28;LDAF=0.1891;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 168059866 rs275149 A G 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.71;AMR_AF=0.46;AN=2;ASN_AF=0.23;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.35;LDAF=0.4136;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 168160781 rs2023424 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.10;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0744;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 168165888 rs16860183 T G 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.13;AMR_AF=0.10;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.0748;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 168200733 rs11588504 T C 100 PASS AA=T;AC=1;AF=0.51;AFR_AF=0.31;AMR_AF=0.54;AN=2;ASN_AF=0.46;AVGPOST=0.9957;ERATE=0.0119;EUR_AF=0.68;LDAF=0.5140;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 168274201 rs4656579 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.43;AMR_AF=0.58;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5379;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 168282261 rs3885717 T A 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.49;AMR_AF=0.44;AN=2;ASN_AF=0.46;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.40;LDAF=0.4436;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 168511284 rs4282797 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.16;AMR_AF=0.23;AN=2;ASN_AF=0.62;AVGPOST=0.9715;ERATE=0.0137;EUR_AF=0.16;LDAF=0.2895;RSQ=0.9610;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 168511321 rs4501820 C T 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.53;AVGPOST=0.9754;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2568;RSQ=0.9624;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 168511325 rs4301615 G C 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.07;AMR_AF=0.24;AN=2;ASN_AF=0.53;AVGPOST=0.9751;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2567;RSQ=0.9623;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 168511349 rs4478789 A G 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.23;AN=2;ASN_AF=0.61;AVGPOST=0.9662;ERATE=0.0134;EUR_AF=0.16;LDAF=0.2860;RSQ=0.9557;SNPSOURCE=LOWCOV,EXOME;THETA=0.0123;VT=SNP GT:DS:GL 0|1:1.000:-4.22,-0.00,-5.00 +1 168513129 rs3820405 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.21;AMR_AF=0.37;AN=2;ASN_AF=0.73;AVGPOST=0.9768;ERATE=0.0216;EUR_AF=0.29;LDAF=0.4015;RSQ=0.9713;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-3.18,-0.00,-5.00 +1 168513243 rs1933114 G A 100 PASS AA=g;AC=1;AF=0.40;AFR_AF=0.27;AMR_AF=0.36;AN=2;ASN_AF=0.73;AVGPOST=0.9872;ERATE=0.0087;EUR_AF=0.26;LDAF=0.4039;RSQ=0.9848;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 168545949 rs34933908 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.65;AMR_AF=0.54;AN=2;ASN_AF=0.35;AVGPOST=0.9786;ERATE=0.0429;EUR_AF=0.66;LDAF=0.5565;RSQ=0.9638;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 168698173 rs1052591 C T 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.26;AMR_AF=0.31;AN=2;ASN_AF=0.16;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.3268;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169094100 rs968304 T A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.66;AMR_AF=0.64;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6742;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169256501 rs4589164 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.08;AMR_AF=0.20;AN=2;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.34;LDAF=0.1696;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169272451 rs10800427 A T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9799;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169272453 rs10800428 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9799;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169293721 rs7538259 G A 100 PASS AA=G;AC=2;AF=0.27;AFR_AF=0.18;AMR_AF=0.42;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2688;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169390957 rs35107735 A T 100 PASS AA=A;AC=2;AF=0.18;AFR_AF=0.08;AMR_AF=0.22;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.1855;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169391154 rs3820059 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.65;AMR_AF=0.73;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7454;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169498834 rs6009 T C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.85;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=0.9945;ERATE=0.0030;EUR_AF=0.93;LDAF=0.9120;RSQ=0.9780;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169509687 rs138504020 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169510233 rs9332607 G A 100 PASS AA=-;AC=2;AF=0.26;AFR_AF=0.20;AMR_AF=0.29;AN=2;AVGPOST=0.9866;ERATE=0.0324;EUR_AF=0.47;LDAF=0.2587;RSQ=0.9813;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169519049 rs6025 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9941;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169580885 rs6131 C T 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.30;AMR_AF=0.18;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=0.19;LDAF=0.2144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169697076 rs5367 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0597;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169697166 rs3917424 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0598;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169698789 rs5363 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0599;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169698825 rs1534904 T G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.97;AMR_AF=0.76;AN=2;ASN_AF=0.71;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7719;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169700961 rs5362 A G 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0599;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169701060 rs5361 T G 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9984;ERATE=0.0008;EUR_AF=0.09;LDAF=0.0555;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169701108 rs3917410 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0599;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169701901 rs1800016 T C 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0599;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169701904 rs1800015 T C 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0599;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169702705 rs932307 G A 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.39;AMR_AF=0.38;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.3916;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169702772 rs1805193 C A 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0599;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169773317 rs11590604 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1411;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169823718 rs4656197 T C 100 PASS AA=T;AC=1;AF=0.65;AFR_AF=0.72;AMR_AF=0.67;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.6481;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 169890933 rs518928 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.90;LDAF=0.9505;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 169941761 rs511443 A T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.90;LDAF=0.9519;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +1 169951997 rs33943686 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.11;AMR_AF=0.30;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.33;LDAF=0.3181;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 169952385 rs2057249 G T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=1.00;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.90;LDAF=0.9534;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.73,-0.01 +1 169985796 rs16862933 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.01;AMR_AF=0.28;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.29;LDAF=0.2763;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 170004722 rs4656732 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.08;AMR_AF=0.19;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0016;EUR_AF=0.12;LDAF=0.1257;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 170501385 rs7531125 A C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.73;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9392;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 170501456 rs11578119 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.05;AMR_AF=0.35;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.1947;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 170511604 rs7538037 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.06;AMR_AF=0.36;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.32;LDAF=0.3569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 170521376 rs913257 G A 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.53;AMR_AF=0.51;AN=2;ASN_AF=0.91;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.49;LDAF=0.6102;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 170916646 rs4656817 G T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.28;AN=2;ASN_AF=0.32;AVGPOST=0.9858;ERATE=0.0014;EUR_AF=0.20;LDAF=0.2389;RSQ=0.9721;SNPSOURCE=LOWCOV,EXOME;THETA=0.0200;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 170927573 rs45626233 T C 100 PASS AA=t;AC=1;AF=0.16;AFR_AF=0.04;AMR_AF=0.14;AN=2;ASN_AF=0.32;AVGPOST=0.9644;ERATE=0.0359;EUR_AF=0.13;LDAF=0.1697;RSQ=0.8955;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 170927615 rs17563089 A G 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.02;AMR_AF=0.10;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.12;LDAF=0.0631;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 170967395 rs151291051 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0064;RSQ=0.9680;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 171076935 rs1800822 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1207;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 171077198 rs1920149 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.73;AMR_AF=0.50;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5155;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 171679958 rs10913530 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.55;AMR_AF=0.27;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3578;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 171810960 rs12239702 A G 100 PASS AA=G;AC=1;AF=0.65;AFR_AF=0.71;AMR_AF=0.56;AN=2;ASN_AF=0.78;AVGPOST=0.9934;ERATE=0.0011;EUR_AF=0.55;LDAF=0.6482;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 172038079 rs12760234 T C 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.09;AMR_AF=0.36;AN=2;ASN_AF=0.17;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2670;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 172356437 rs6688654 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9933;RSQ=0.9761;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 172410967 rs1063412 G A 100 PASS AA=G;AC=2;AF=0.50;AFR_AF=0.10;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5000;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 172411496 rs2230471 A G 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.90;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.9090;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +1 172425529 rs2285170 C G 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.06;AMR_AF=0.52;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.4524;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 172437592 rs1129942 G A 100 PASS AA=G;AC=2;AF=0.85;AFR_AF=0.73;AMR_AF=0.86;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8460;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 172547465 rs2285664 A G 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.20;AMR_AF=0.25;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2111;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 172634734 rs2639653 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9921;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 173457017 rs78495657 C T 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.71;AMR_AF=0.25;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.21;LDAF=0.4356;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 173478877 rs16846052 G T 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.54;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0040;LDAF=0.1316;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173503585 rs56043618 G T 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.20;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0476;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173503864 rs10798285 A G 100 PASS AA=A;AC=1;AF=0.44;AFR_AF=0.63;AMR_AF=0.35;AN=2;ASN_AF=0.62;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.22;LDAF=0.4386;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173505104 rs1461021 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.58;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0040;LDAF=0.1385;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173516903 rs10494490 A G 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.69;AMR_AF=0.36;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.22;LDAF=0.4538;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173517540 rs6425247 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.48;AMR_AF=0.05;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0026;LDAF=0.1165;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173552703 rs16828416 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.29;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0685;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173552783 rs12032386 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.76;AMR_AF=0.39;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.5019;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173596257 rs12059066 A T 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.72;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1723;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173596273 rs12059068 A G 100 PASS AA=A;AC=1;AF=0.17;AFR_AF=0.72;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1723;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173628589 rs57404133 A T 100 PASS AA=T;AC=1;AF=0.04;AFR_AF=0.18;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173825898 rs57068378 T G 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.26;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0612;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173878832 rs5878 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.87;AMR_AF=0.36;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5320;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 173878862 rs5877 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.87;AMR_AF=0.40;AN=2;ASN_AF=0.65;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.34;LDAF=0.5466;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 173907812 rs6703547 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.81;AMR_AF=0.17;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.3176;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 173952539 rs6686083 T A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.90;AMR_AF=0.24;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.4676;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 174188285 rs2103640 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.38;AMR_AF=0.29;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.2486;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 174219724 rs7339904 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.27;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0626;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 174417231 rs7516240 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9776;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 174969271 rs1046439 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.98;AMR_AF=0.62;AN=2;ASN_AF=0.65;AVGPOST=0.9987;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7318;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.45,-0.02 +1 174969277 rs111585397 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.04;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0123;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 174973777 rs139819219 G T 100 PASS AA=G;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0078;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175046789 rs2072032 A G 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.83;AMR_AF=0.52;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5437;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175053101 rs2072030 A T 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.74;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5201;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175054548 rs1573758 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.73;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.50;LDAF=0.5179;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175087677 rs6656284 G A 100 PASS AA=A;AC=2;AF=0.44;AFR_AF=0.88;AMR_AF=0.38;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4375;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175087729 rs6696455 T C 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.85;AMR_AF=0.38;AN=2;ASN_AF=0.08;AVGPOST=0.9931;ERATE=0.0025;EUR_AF=0.43;LDAF=0.4255;RSQ=0.9919;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175092674 rs2285215 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6111;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175092707 rs10798333 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.45;AMR_AF=0.30;AN=2;ASN_AF=0.09;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3304;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175092840 rs2072041 T C 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.64;AMR_AF=0.67;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.6110;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175097331 rs10912891 G A 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.33;AMR_AF=0.44;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.64;LDAF=0.4657;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175097349 rs7547567 C T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.81;AMR_AF=0.73;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.6664;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175097911 rs6664308 T A 100 PASS AA=T;AC=1;AF=0.05;AFR_AF=0.15;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0526;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 175105942 rs4650703 G A 100 PASS AA=A;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9849;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175113578 rs10912897 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9831;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175116252 rs4651335 C G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.99;AMR_AF=0.89;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.86;LDAF=0.8652;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 175292633 rs150154842 C A 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.11;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0188;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175299301 rs2027867 T C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.86;AMR_AF=0.76;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7884;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175324651 rs2228359 A G 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.54;AMR_AF=0.70;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6917;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 175335234 rs1385541 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.14;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1792;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 175336305 rs1872439 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.10;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.24;LDAF=0.1476;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 175348723 rs859427 C T 100 PASS AA=T;AC=1;AF=0.70;AFR_AF=0.68;AMR_AF=0.70;AN=2;ASN_AF=0.80;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.7010;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175355128 rs859436 C G 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.64;AMR_AF=0.69;AN=2;ASN_AF=0.70;AVGPOST=0.9997;ERATE=0.0030;EUR_AF=0.56;LDAF=0.6363;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175355391 rs859437 A G 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.79;AMR_AF=0.83;AN=2;ASN_AF=0.90;AVGPOST=0.9995;ERATE=0.0007;EUR_AF=0.77;LDAF=0.8198;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175365663 rs859446 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175375334 rs859400 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.45;AMR_AF=0.43;AN=2;ASN_AF=0.53;AVGPOST=0.9995;ERATE=0.0016;EUR_AF=0.34;LDAF=0.4275;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175375469 rs2239819 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.10;AMR_AF=0.33;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2994;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175375683 rs859399 T C 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.75;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7216;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 175375802 rs859398 T C 100 PASS AA=C;AC=1;AF=0.72;AFR_AF=0.74;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7175;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 176012807 rs4233165 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9470;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 176857347 rs2072935 A G 100 PASS AA=G;AC=1;AF=0.83;AFR_AF=0.86;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 176863836 rs2281180 G C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.86;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8318;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 176863867 rs2228956 T C 100 PASS AA=C;AC=1;AF=0.83;AFR_AF=0.86;AMR_AF=0.78;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8314;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 176915022 rs2076070 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.40;AMR_AF=0.28;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2312;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 176918504 rs2076073 A G 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.25;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1824;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 176934389 rs12565733 T A 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1307;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 176992553 rs172917 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.79;AMR_AF=0.52;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.59;LDAF=0.5152;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 176999917 rs12568439 G A 100 PASS AA=A;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1545;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 177001896 rs2076069 C G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.03;AMR_AF=0.21;AN=2;ASN_AF=0.24;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1561;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 177199323 rs3176442 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.24;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3985;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 177901741 rs684227 A G 100 PASS AA=A;AC=1;AF=0.56;AFR_AF=0.39;AMR_AF=0.56;AN=2;ASN_AF=0.71;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.56;LDAF=0.5604;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-0.22,-0.40,-5.00 +1 177906657 rs6676302 G A 100 PASS AA=A;AC=1;AF=0.21;AFR_AF=0.25;AMR_AF=0.22;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2075;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 177908852 rs943762 C T 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.04;AMR_AF=0.18;AN=2;ASN_AF=0.33;AVGPOST=0.9983;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1697;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 177923440 rs12129817 T G 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.20;AMR_AF=0.22;AN=2;ASN_AF=0.02;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.23;LDAF=0.1674;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 177929554 rs10913472 C T 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.25;AMR_AF=0.51;AN=2;ASN_AF=0.60;AVGPOST=0.9982;ERATE=0.0008;EUR_AF=0.47;LDAF=0.4588;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 177929987 rs12040910 T C 100 PASS AA=C;AC=2;AF=0.80;AFR_AF=0.90;AMR_AF=0.79;AN=2;ASN_AF=0.79;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.75;LDAF=0.8017;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 177930096 rs867275 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.13;AMR_AF=0.34;AN=2;ASN_AF=0.31;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.27;LDAF=0.2614;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 177930894 rs945641 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.90;AMR_AF=0.79;AN=2;ASN_AF=0.77;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7926;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 178433368 rs12039605 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.10;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.10;LDAF=0.1006;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 178442190 rs10913557 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.12;AMR_AF=0.12;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1037;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 178483231 rs10913563 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.26;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3995;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 178489978 rs3813636 T G 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.28;AMR_AF=0.46;AN=2;ASN_AF=0.42;AVGPOST=0.9978;ERATE=0.0027;EUR_AF=0.44;LDAF=0.4051;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 178854162 rs6425503 C T 100 PASS AA=T;AC=1;AF=0.61;AFR_AF=0.78;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.59;LDAF=0.6095;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 178858759 rs3753534 G A 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.65;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4095;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 179051300 rs2296377 T C 100 PASS AA=C;AC=1;AF=0.77;AFR_AF=0.98;AMR_AF=0.69;AN=2;ASN_AF=0.69;AVGPOST=0.9967;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7680;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.14,-0.00,-3.70 +1 179087934 rs2171959 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.74;AMR_AF=0.58;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.64;LDAF=0.6348;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179310262 rs11576517 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.14;AMR_AF=0.25;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.25;LDAF=0.2934;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179312102 rs4651024 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.41;AMR_AF=0.46;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.54;LDAF=0.4886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179312752 rs10753191 C T 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.34;AMR_AF=0.23;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2518;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 179319541 rs3753526 C G 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.10;AMR_AF=0.17;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1700;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 179319580 rs3753527 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.75;AMR_AF=0.69;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.7413;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 179320578 rs13306731 A G 100 PASS AA=A;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.10;AN=2;ASN_AF=0.30;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1239;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 179339262 rs16854009 C G 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.11;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1568;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.42,-0.00,-5.00 +1 179347832 rs10798674 T C 100 PASS AA=T;AC=2;AF=0.51;AFR_AF=0.31;AMR_AF=0.49;AN=2;ASN_AF=0.72;AVGPOST=0.9989;ERATE=0.0024;EUR_AF=0.49;LDAF=0.5124;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 179364372 rs12405133 G C 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.05;AMR_AF=0.11;AN=2;ASN_AF=0.31;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1435;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 179398726 rs150583143 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0009;LDAF=0.0128;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179401503 rs12097041 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.13;AN=2;ASN_AF=0.31;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.1659;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 179452275 rs10494520 G A 100 PASS AA=g;AC=1;AF=0.18;AFR_AF=0.15;AMR_AF=0.14;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1792;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 179504043 rs6658180 C G 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.21;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9983;ERATE=0.0023;EUR_AF=0.40;LDAF=0.3776;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179504130 rs6425574 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.13;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.40;LDAF=0.3597;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179520506 rs1410592 G A 100 PASS AA=A;AC=1;AF=0.57;AFR_AF=0.52;AMR_AF=0.68;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.60;LDAF=0.5750;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179544898 rs1079292 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.78;AMR_AF=0.96;AN=2;ASN_AF=0.97;AVGPOST=0.9888;ERATE=0.0015;EUR_AF=0.99;LDAF=0.9327;RSQ=0.9361;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-3.15,-0.48,-0.18 +1 179562740 rs61310274 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.09;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3323;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179604864 rs4628468 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.70;AMR_AF=0.83;AN=2;ASN_AF=0.89;AVGPOST=0.9999;ERATE=0.0014;EUR_AF=0.77;LDAF=0.7934;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 179605058 rs4483370 G A 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.36;AMR_AF=0.49;AN=2;ASN_AF=0.50;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.46;LDAF=0.4544;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 179609576 rs183321034 T A 100 PASS AA=T;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:0.900:-5.00,0.00,-5.00 +1 179609589 rs16854429 G T 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.09;AMR_AF=0.20;AN=2;ASN_AF=0.34;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2172;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 179782224 rs184499634 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.07;AN=2;AVGPOST=0.9979;ERATE=0.0005;LDAF=0.0126;RSQ=0.9329;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.46 +1 179852074 rs1281378 T C 100 PASS AA=T;AC=2;AF=0.61;AFR_AF=0.38;AMR_AF=0.65;AN=2;ASN_AF=0.79;AVGPOST=0.9981;ERATE=0.0005;EUR_AF=0.61;LDAF=0.6117;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 179858444 rs2245425 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.44;AMR_AF=0.67;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.61;LDAF=0.6266;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 179876988 rs609521 C G 100 PASS AA=c;AC=2;AF=0.59;AFR_AF=0.30;AMR_AF=0.65;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.61;LDAF=0.5932;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 179887125 rs627897 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.86;AMR_AF=0.94;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9200;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 179983665 rs2501607 G A 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5882;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 179989742 rs2477120 G C 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.72;AVGPOST=1.0000;ERATE=0.0007;EUR_AF=0.65;LDAF=0.5887;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 180022343 rs9425854 T G 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5905;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 180059811 rs10798729 A C 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.26;AMR_AF=0.70;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5909;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +1 180080115 rs3767202 T G 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.21;AMR_AF=0.69;AN=2;ASN_AF=0.73;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.65;LDAF=0.5773;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 180145088 rs2298206 A G 100 PASS AA=G;AC=2;AF=0.89;AFR_AF=0.80;AMR_AF=0.96;AN=2;ASN_AF=0.83;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.8880;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.98,-0.05 +1 180241155 rs3806302 G T 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.09;AMR_AF=0.17;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.06;LDAF=0.0768;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 180257692 rs2254465 A C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.96;AMR_AF=0.94;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9584;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 180885430 rs10732273 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9966;RSQ=0.9199;SNPSOURCE=LOWCOV,EXOME;THETA=0.0079;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 180897521 rs7544551 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=0.78;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9963;ERATE=0.0077;EUR_AF=1.00;LDAF=0.9398;RSQ=0.9747;SNPSOURCE=LOWCOV,EXOME;THETA=0.0106;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 180905352 rs3795505 C T 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.19;AMR_AF=0.45;AN=2;ASN_AF=0.24;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3252;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 180905448 rs3795504 G T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.37;AMR_AF=0.48;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.45;LDAF=0.3852;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 180905694 rs3795503 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.24;AN=2;ASN_AF=0.52;AVGPOST=0.9972;ERATE=0.0004;EUR_AF=0.31;LDAF=0.3149;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 180913597 rs2331995 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0007;EUR_AF=1.00;LDAF=0.9957;RSQ=0.8933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 180953853 rs3747957 A G 100 PASS AA=A;AC=2;AF=0.57;AFR_AF=0.46;AMR_AF=0.62;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.5727;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 181018180 rs2236411 C G 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.07;AN=2;ASN_AF=0.05;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0957;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 0|1:1.000:-4.10,-0.00,-5.00 +1 181024404 rs3747956 G A 100 PASS AA=G;AC=2;AF=0.49;AFR_AF=0.53;AMR_AF=0.47;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4936;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 181058313 rs3747955 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.27;AMR_AF=0.44;AN=2;ASN_AF=0.63;AVGPOST=0.9910;ERATE=0.0010;EUR_AF=0.39;LDAF=0.4319;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.28,-0.00,-2.39 +1 182026813 rs12568050 G C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.12;AMR_AF=0.11;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1705;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 182027022 rs12564283 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.11;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.15;LDAF=0.1701;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 182354850 rs2296520 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6595;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 182355046 rs2296519 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6595;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 182356399 rs1058111 A G 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.73;AMR_AF=0.62;AN=2;ASN_AF=0.81;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6594;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 182369078 rs6698722 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.95;AMR_AF=0.81;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8414;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 182369233 rs6674281 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.74;AMR_AF=0.61;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6600;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 182569626 rs1144566 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9872;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 182571277 rs569790 C T 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.17;AMR_AF=0.43;AN=2;ASN_AF=0.23;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3002;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 182850727 rs6677840 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9856;RSQ=0.9738;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 182993025 rs10911194 C T 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.37;AMR_AF=0.57;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.55;LDAF=0.5192;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183072590 rs2296288 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.58;LDAF=0.5354;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183072701 rs2296289 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1024;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 183084607 rs3736888 A G 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.52;AVGPOST=0.9891;ERATE=0.0004;EUR_AF=0.48;LDAF=0.4527;RSQ=0.9863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183084608 rs2027082 C A 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.27;AMR_AF=0.52;AN=2;ASN_AF=0.52;AVGPOST=0.9889;ERATE=0.0005;EUR_AF=0.48;LDAF=0.4527;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183085696 rs6424888 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5334;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183085755 rs20563 A G 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5343;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183086757 rs2296292 A C 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5342;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183093875 rs20557 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5343;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183094547 rs20558 T C 100 PASS AA=C;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5343;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183095234 rs1886501 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5345;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183099701 rs2296300 G A 100 PASS AA=G;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5343;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183100555 rs2333620 T C 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.52;AVGPOST=0.9931;ERATE=0.0136;EUR_AF=0.53;LDAF=0.4982;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183100563 rs4997370 G T 100 PASS AA=T;AC=2;AF=0.47;AFR_AF=0.35;AMR_AF=0.52;AN=2;ASN_AF=0.52;AVGPOST=0.9843;ERATE=0.0461;EUR_AF=0.50;LDAF=0.4736;RSQ=0.9721;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.80,-0.00 +1 183101686 rs12095664 G A 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.38;AMR_AF=0.58;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.57;LDAF=0.5342;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183102719 rs73036945 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.10;AMR_AF=0.16;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1194;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 183105534 rs20560 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.48;AMR_AF=0.60;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0016;EUR_AF=0.58;LDAF=0.5553;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183105705 rs20561 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.19;AMR_AF=0.40;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0017;EUR_AF=0.45;LDAF=0.3850;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 183155482 rs684527 C A 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.07;AMR_AF=0.33;AN=2;ASN_AF=0.39;AVGPOST=0.9801;ERATE=0.0043;EUR_AF=0.32;LDAF=0.2853;RSQ=0.9647;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.73,-0.09 +1 183177218 rs647347 A G 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.49;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.46;LDAF=0.4872;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 183184616 rs2274980 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.41;AMR_AF=0.29;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2875;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183187494 rs10911285 T C 100 PASS AA=T;AC=2;AF=0.29;AFR_AF=0.41;AMR_AF=0.29;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2875;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183187603 rs1129723 C T 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.41;AMR_AF=0.29;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2875;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +1 183192304 rs1047980 T G 100 PASS AA=G;AC=2;AF=0.32;AFR_AF=0.55;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3227;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183192496 rs3738824 A G 100 PASS AA=A;AC=1;AF=0.13;AFR_AF=0.12;AMR_AF=0.14;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0015;EUR_AF=0.11;LDAF=0.1289;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 183201970 rs2296303 G C 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.22;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1535;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 183205569 rs3738822 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0361;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 183206573 rs1047981 G A 100 PASS AA=A;AC=2;AF=0.32;AFR_AF=0.54;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3181;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183207603 rs1925043 T C 100 PASS AA=C;AC=2;AF=0.32;AFR_AF=0.55;AMR_AF=0.31;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.17;LDAF=0.3236;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183212548 rs3768593 T G 100 PASS AA=G;AC=2;AF=0.30;AFR_AF=0.39;AMR_AF=0.29;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2965;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183262006 rs2301876 G C 100 PASS AA=G;AC=1;AF=0.04;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.0384;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 183486859 rs789169 G A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9360;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183534935 rs2296164 C T 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.36;AMR_AF=0.54;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5014;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 183542387 rs2274064 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.36;AMR_AF=0.55;AN=2;ASN_AF=0.65;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.47;LDAF=0.5021;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 183616926 rs1174657 T C 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.48;AMR_AF=0.39;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3578;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183617105 rs1174658 A G 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.48;AMR_AF=0.39;AN=2;ASN_AF=0.19;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.40;LDAF=0.3577;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 183775638 rs11579867 A T 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.06;AMR_AF=0.23;AN=2;ASN_AF=0.05;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1796;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 183876182 rs11591089 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.25;AMR_AF=0.29;AN=2;ASN_AF=0.08;AVGPOST=0.9994;ERATE=0.0022;EUR_AF=0.29;LDAF=0.2254;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 183895435 rs4382680 A C 100 PASS AA=A;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.08;AN=2;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.11;LDAF=0.0529;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 183909717 rs2296713 G A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1869;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 183909934 rs1887278 G A 100 PASS AA=A;AC=1;AF=0.19;AFR_AF=0.09;AMR_AF=0.27;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1869;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 184020945 rs2274432 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.16;AMR_AF=0.31;AN=2;ASN_AF=0.46;AVGPOST=0.9968;ERATE=0.0005;EUR_AF=0.33;LDAF=0.3229;RSQ=0.9936;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-0.19,-0.46,-2.47 +1 184023529 rs1046934 A C 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.15;AMR_AF=0.31;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3214;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 184663537 rs9425343 A C 100 PASS AA=A;AC=2;AF=0.34;AFR_AF=0.06;AMR_AF=0.37;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.37;LDAF=0.3405;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 184663581 rs9425634 T C 100 PASS AA=T;AC=2;AF=0.41;AFR_AF=0.22;AMR_AF=0.41;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4109;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 184675814 rs1062994 G A 100 PASS AA=G;AC=2;AF=0.34;AFR_AF=0.04;AMR_AF=0.36;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3373;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 184677464 rs3736757 G A 100 PASS AA=A;AC=2;AF=0.60;AFR_AF=0.81;AMR_AF=0.52;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6047;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 184695571 rs10752941 C T 100 PASS AA=T;AC=2;AF=0.60;AFR_AF=0.79;AMR_AF=0.52;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.47;LDAF=0.6005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 184764067 rs581100 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.18;AMR_AF=0.38;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.34;LDAF=0.3588;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 184764681 rs35545276 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0411;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 184764824 rs35704242 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.04;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0411;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 184765072 rs28927681 A G 100 PASS AA=a;AC=1;AF=0.18;AFR_AF=0.52;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1805;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 184777177 rs543912 C A 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.36;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1970;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 184801065 rs487675 T C 100 PASS AA=T;AC=1;AF=0.29;AFR_AF=0.37;AMR_AF=0.27;AN=2;ASN_AF=0.18;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2917;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 185094277 rs7523448 G T 100 PASS AA=G;AC=1;AF=0.30;AFR_AF=0.50;AMR_AF=0.31;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.34;LDAF=0.2989;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 185135745 rs950327 A G 100 PASS AA=A;AC=1;AF=0.34;AFR_AF=0.47;AMR_AF=0.36;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.34;LDAF=0.3418;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 185240474 rs12041704 A G 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.27;AMR_AF=0.37;AN=2;ASN_AF=0.30;AVGPOST=0.9997;ERATE=0.0011;EUR_AF=0.43;LDAF=0.3487;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 185833565 rs7556537 A C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.96;AMR_AF=0.47;AN=2;ASN_AF=0.47;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.45;LDAF=0.5698;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 185984517 rs6665753 T C 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.05;AMR_AF=0.41;AN=2;ASN_AF=0.40;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3449;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 185985173 rs148365191 G C 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0018;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 186026474 rs12129650 T C 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.52;AMR_AF=0.60;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.51;LDAF=0.5484;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 186031041 rs7522627 C T 100 PASS AA=T;AC=1;AF=0.64;AFR_AF=0.84;AMR_AF=0.62;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.55;LDAF=0.6432;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 186050417 rs10798035 A G 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.66;AMR_AF=0.63;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.51;LDAF=0.5886;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 186055371 rs6425017 A G 100 PASS 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AA=t;AC=1;AF=0.47;AFR_AF=0.61;AMR_AF=0.47;AN=2;ASN_AF=0.53;AVGPOST=0.9964;ERATE=0.0077;EUR_AF=0.33;LDAF=0.4695;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 186092076 rs2057388 A C 100 PASS AA=C;AC=1;AF=0.57;AFR_AF=0.88;AMR_AF=0.53;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.36;LDAF=0.5689;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 186101539 rs10911825 A G 100 PASS AA=A;AC=1;AF=0.48;AFR_AF=0.66;AMR_AF=0.45;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4749;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.70 +1 186141301 rs4651302 G A 100 PASS AA=A;AC=1;AF=0.64;AFR_AF=0.94;AMR_AF=0.62;AN=2;ASN_AF=0.60;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.48;LDAF=0.6379;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 186273994 rs2273779 C T 100 PASS 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AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9776;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 200877850 rs41299637 T G 100 PASS AA=T;AC=1;AF=0.16;AFR_AF=0.15;AMR_AF=0.19;AN=2;ASN_AF=0.0035;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.26;LDAF=0.1554;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 200880978 rs296520 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.53;AMR_AF=0.79;AN=2;ASN_AF=0.99;AVGPOST=0.9948;ERATE=0.0012;EUR_AF=0.74;LDAF=0.7660;RSQ=0.9894;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.050:-3.62,-0.51,-0.16 +1 200944840 rs296563 T G 100 PASS AA=G;AC=1;AF=0.75;AFR_AF=0.79;AMR_AF=0.75;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7486;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 200957691 rs2297912 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.48;AMR_AF=0.23;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.18;LDAF=0.3497;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 200960307 rs2297909 G A 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.22;AMR_AF=0.25;AN=2;ASN_AF=0.22;AVGPOST=0.9988;ERATE=0.0007;EUR_AF=0.30;LDAF=0.2510;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 200967490 rs10920089 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.85;AMR_AF=0.47;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5966;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201020105 rs6702590 A G 100 PASS AA=.;AC=2;AF=0.84;AFR_AF=0.96;AMR_AF=0.76;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.69;LDAF=0.8418;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 201022376 rs56183942 G A 100 PASS AA=.;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.06;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0695;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201035071 rs2297902 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.20;AVGPOST=0.9989;ERATE=0.0021;EUR_AF=0.02;LDAF=0.0716;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201044748 rs1998721 A G 100 PASS AA=G;AC=2;AF=0.75;AFR_AF=0.51;AMR_AF=0.75;AN=2;ASN_AF=0.95;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.77;LDAF=0.7522;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 201047062 rs4915476 G A 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.31;AMR_AF=0.28;AN=2;ASN_AF=0.05;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.23;LDAF=0.2088;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 201047075 rs4915477 A G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.95;AMR_AF=0.70;AN=2;ASN_AF=0.27;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.65;LDAF=0.6241;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 201047135 rs16847674 G A 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.17;AMR_AF=0.11;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.1376;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201052283 rs3767512 G A 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.0020;AMR_AF=0.07;AN=2;ASN_AF=0.20;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0721;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201054197 rs41267505 G T 100 PASS AA=G;AC=1;AF=0.14;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1409;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 201060865 rs2296383 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.05;AMR_AF=0.41;AN=2;ASN_AF=0.39;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.42;LDAF=0.3277;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201112981 rs8158 A G 100 PASS AA=G;AC=1;AF=0.71;AFR_AF=0.68;AMR_AF=0.73;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.77;LDAF=0.7134;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201113118 rs3738266 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.96;AMR_AF=0.96;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9369;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 201115822 rs3752978 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.44;AMR_AF=0.32;AN=2;ASN_AF=0.40;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3650;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201116018 rs3752979 C G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.96;AMR_AF=0.96;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9369;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 201122947 rs1925361 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.95;AMR_AF=0.96;AN=2;ASN_AF=0.87;AVGPOST=0.9813;ERATE=0.0079;EUR_AF=0.95;LDAF=0.9246;RSQ=0.9059;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 201252866 rs2268147 C T 100 PASS AA=C;AC=1;AF=0.14;AFR_AF=0.35;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1420;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201285759 rs1779297 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9785;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 201286678 rs1794867 C T 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1893;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201286771 rs1722779 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1893;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201288898 rs1722759 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 201288955 rs1626370 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1778;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201291066 rs2071960 C T 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.41;AMR_AF=0.74;AN=2;ASN_AF=0.77;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6608;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 201291283 rs1772832 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.12;AMR_AF=0.17;AN=2;ASN_AF=0.22;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.19;LDAF=0.1783;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 201292110 rs1779288 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.98;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 201331554 rs1104859 T G 100 PASS AA=G;AC=1;AF=0.72;AFR_AF=0.80;AMR_AF=0.81;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7185;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 201334382 rs3729547 G A 100 PASS 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AA=G;AC=1;AF=0.14;AFR_AF=0.09;AMR_AF=0.09;AN=2;ASN_AF=0.34;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.04;LDAF=0.1382;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 203148633 rs4950927 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9996;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 203152801 rs880633 T C 100 PASS AA=T;AC=1;AF=0.37;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.36;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.53;LDAF=0.3747;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 203154532 rs1538372 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.72;AMR_AF=0.65;AN=2;ASN_AF=0.65;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.66;LDAF=0.6686;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 203317162 rs7543148 C T 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.28;AMR_AF=0.79;AN=2;ASN_AF=0.61;AVGPOST=0.9984;ERATE=0.0054;EUR_AF=0.87;LDAF=0.6547;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 203652444 rs1419114 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.63;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8670;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 203667409 rs2228445 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.67;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8761;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 203677250 rs3753036 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.14;AN=2;ASN_AF=0.24;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1514;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 203740458 rs3820196 C A 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.28;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2765;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 203740462 rs3820195 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.28;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.2765;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 203740615 rs3737976 T C 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.34;AMR_AF=0.53;AN=2;ASN_AF=0.09;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.61;LDAF=0.3982;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 203787700 rs4951260 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 203798978 rs201157723 A G 100 PASS AA=A;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +1 203803016 rs6694647 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204082002 rs2293336 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.47;AN=2;ASN_AF=0.27;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.38;LDAF=0.2921;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204086324 rs144279050 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.09;AN=2;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0247;RSQ=0.9833;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204095280 rs41306221 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.16;AMR_AF=0.07;AN=2;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.06;LDAF=0.0659;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204101421 rs12730254 G A 100 PASS AA=G;AC=1;AF=0.04;AFR_AF=0.04;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0364;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204103618 rs2293335 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.18;AMR_AF=0.63;AN=2;ASN_AF=0.51;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5218;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204115934 rs2293337 C T 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.24;AN=2;ASN_AF=0.12;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2155;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204129671 rs5707 A C 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.35;AMR_AF=0.20;AN=2;ASN_AF=0.37;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2997;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204130376 rs2272237 G C 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.03;AMR_AF=0.25;AN=2;ASN_AF=0.18;AVGPOST=0.9979;ERATE=0.0005;EUR_AF=0.37;LDAF=0.2245;RSQ=0.9957;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204159787 rs4889 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.40;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9559;ERATE=0.0053;EUR_AF=0.25;LDAF=0.3267;RSQ=0.9212;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.41,-0.21 +1 204198209 rs3795571 A G 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.68;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.44;LDAF=0.5210;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204199614 rs10900562 C T 100 PASS AA=T;AC=1;AF=0.52;AFR_AF=0.67;AMR_AF=0.53;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.5187;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.70 +1 204210791 rs4951325 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.20;AMR_AF=0.44;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3583;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204216468 rs4512713 C T 100 PASS AA=C;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.75;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6974;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204216601 rs4288652 G A 100 PASS AA=G;AC=1;AF=0.70;AFR_AF=0.67;AMR_AF=0.75;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.6974;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204230581 rs3795569 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.51;AMR_AF=0.68;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.6189;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204237416 rs10900571 C T 100 PASS AA=C;AC=1;AF=0.68;AFR_AF=0.51;AMR_AF=0.75;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6760;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204379617 rs3014626 T C 100 PASS AA=C;AC=2;AF=0.97;AFR_AF=0.88;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9715;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204409281 rs3014631 C G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.65;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9196;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204413297 rs2292459 C T 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.43;AMR_AF=0.78;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6216;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204413299 rs2292460 G A 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.38;AMR_AF=0.77;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.77;LDAF=0.5763;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204418939 rs3014637 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.36;AMR_AF=0.77;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.77;LDAF=0.5721;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.22,-0.00 +1 204429838 rs2271414 C G 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.38;AMR_AF=0.89;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7907;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204433093 rs2271415 A C 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.29;AMR_AF=0.79;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.5786;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204438334 rs1124777 C T 100 PASS AA=C;AC=2;AF=0.77;AFR_AF=0.28;AMR_AF=0.89;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7655;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204438643 rs1553921 G T 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.28;AMR_AF=0.89;AN=2;ASN_AF=0.81;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.7655;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204512100 rs4252717 T C 100 PASS AA=T;AC=1;AF=0.57;AFR_AF=0.22;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.5667;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204516025 rs2290854 A G 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.23;AMR_AF=0.59;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.5694;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204518842 rs4245739 C A 100 PASS AA=A;AC=1;AF=0.78;AFR_AF=0.72;AMR_AF=0.69;AN=2;ASN_AF=0.95;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7840;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204587240 rs3747632 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.03;AMR_AF=0.47;AN=2;ASN_AF=0.31;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3163;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204921258 rs12141283 A G 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.09;AMR_AF=0.36;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.45;LDAF=0.2545;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 204943285 rs2595945 A T 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.75;AMR_AF=0.98;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9360;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 204943947 rs2246662 C A 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.23;AMR_AF=0.45;AN=2;ASN_AF=0.72;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.4656;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204943991 rs2246661 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.26;AMR_AF=0.44;AN=2;ASN_AF=0.66;AVGPOST=0.9834;ERATE=0.0343;EUR_AF=0.35;LDAF=0.4287;RSQ=0.9794;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 204943992 rs2794861 A G 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.72;AMR_AF=0.96;AN=2;ASN_AF=0.92;AVGPOST=0.9879;ERATE=0.0280;EUR_AF=0.96;LDAF=0.8965;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205027737 rs2275697 G A 100 PASS AA=A;AC=2;AF=0.23;AFR_AF=0.11;AMR_AF=0.22;AN=2;ASN_AF=0.47;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2308;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205031116 rs2229866 C T 100 PASS AA=C;AC=2;AF=0.50;AFR_AF=0.31;AMR_AF=0.50;AN=2;ASN_AF=0.87;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.33;LDAF=0.4960;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205034434 rs3901740 G T 100 PASS AA=G;AC=2;AF=0.19;AFR_AF=0.02;AMR_AF=0.18;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.11;LDAF=0.1874;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205041158 rs2229868 C T 100 PASS AA=c;AC=2;AF=0.29;AFR_AF=0.19;AMR_AF=0.25;AN=2;ASN_AF=0.53;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.20;LDAF=0.2935;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205052939 rs4950979 G A 100 PASS AA=A;AC=2;AF=0.79;AFR_AF=0.46;AMR_AF=0.86;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7920;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205053219 rs4951168 C T 100 PASS AA=T;AC=2;AF=0.81;AFR_AF=0.50;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8080;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205069404 rs11240356 G A 100 PASS AA=G;AC=2;AF=0.21;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2134;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205130413 rs3851294 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9491;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205240913 rs9659978 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.99;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.89;LDAF=0.9506;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205272926 rs1106201 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.48;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3194;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205272983 rs1106202 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.12;AMR_AF=0.36;AN=2;ASN_AF=0.48;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.31;LDAF=0.3190;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205275421 rs4951197 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=0.94;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9849;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205389592 rs7531012 G A 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.09;AMR_AF=0.02;AN=2;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0271;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 205492756 rs7529442 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.94;AMR_AF=0.95;AN=2;ASN_AF=0.81;AVGPOST=0.9971;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9160;RSQ=0.9864;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.08,-0.04 +1 205495976 rs1544154 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205497066 rs2297836 G A 100 PASS AA=G;AC=1;AF=0.15;AFR_AF=0.22;AMR_AF=0.24;AN=2;ASN_AF=0.09;AVGPOST=0.9959;ERATE=0.0068;EUR_AF=0.09;LDAF=0.1467;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205499355 rs12042887 C A 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.21;AMR_AF=0.29;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.14;LDAF=0.2283;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205500543 rs11240507 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.27;LDAF=0.1490;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 205549122 rs77822322 T A 100 PASS AA=T;AC=1;AF=0.14;AFR_AF=0.15;AMR_AF=0.22;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1423;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205554085 rs7526132 G C 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.66;AMR_AF=0.49;AN=2;ASN_AF=0.09;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.4168;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205554095 rs7515820 A C 100 PASS AA=C;AC=2;AF=0.36;AFR_AF=0.51;AMR_AF=0.42;AN=2;ASN_AF=0.06;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.47;LDAF=0.3641;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205555145 rs7531623 G A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.52;AMR_AF=0.47;AN=2;ASN_AF=0.21;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3994;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 205568213 rs2282449 C T 100 PASS AA=c;AC=1;AF=0.31;AFR_AF=0.14;AMR_AF=0.34;AN=2;ASN_AF=0.60;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3118;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205568390 rs2282450 T A 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.45;AMR_AF=0.36;AN=2;ASN_AF=0.61;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.23;LDAF=0.3986;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205764640 rs823156 G A 100 PASS AA=G;AC=1;AF=0.69;AFR_AF=0.32;AMR_AF=0.76;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.82;LDAF=0.6878;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205810947 rs11240573 C T 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.13;AMR_AF=0.07;AN=2;ASN_AF=0.17;AVGPOST=0.9991;ERATE=0.0036;EUR_AF=0.08;LDAF=0.1128;RSQ=0.9970;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205811828 rs4951025 A T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.43;AMR_AF=0.23;AN=2;ASN_AF=0.30;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.13;LDAF=0.2574;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0104;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 205814485 rs1104899 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.21;AMR_AF=0.21;AN=2;ASN_AF=0.23;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.25;LDAF=0.2313;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205814497 rs1891460 T C 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.86;AMR_AF=0.87;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.93;LDAF=0.8478;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 205886376 rs35694044 T A 100 PASS AA=T;AC=1;AF=0.07;AFR_AF=0.14;AMR_AF=0.07;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0672;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205886381 rs11240591 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2253;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 205887981 rs16856462 T C 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.17;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0759;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205888143 rs11240593 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.08;AMR_AF=0.15;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.2258;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 205889329 rs16856470 C T 100 PASS AA=C;AC=1;AF=0.05;AFR_AF=0.07;AMR_AF=0.07;AN=2;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.07;LDAF=0.0498;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205890679 rs12759719 T C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.90;AMR_AF=0.93;AN=2;ASN_AF=0.89;AVGPOST=0.9960;ERATE=0.0009;EUR_AF=0.90;LDAF=0.9017;RSQ=0.9842;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.92,-0.00 +1 205892415 rs3811426 C T 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.06;AMR_AF=0.12;AN=2;ASN_AF=0.56;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.10;LDAF=0.2153;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 205896647 rs34803033 A G 100 PASS AA=A;AC=1;AF=0.08;AFR_AF=0.18;AMR_AF=0.08;AN=2;AVGPOST=1.0000;ERATE=0.0009;EUR_AF=0.06;LDAF=0.0754;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205901000 rs33943971 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.20;AMR_AF=0.08;AN=2;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.07;LDAF=0.0796;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205901026 rs146704092 C T 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.01;LDAF=0.0041;RSQ=0.9841;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 205901788 rs3811423 G T 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.62;AMR_AF=0.30;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.27;LDAF=0.4563;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 206647742 rs1539242 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9989;RSQ=0.9030;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 206647787 rs1539243 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.87;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9994;ERATE=0.0067;EUR_AF=0.83;LDAF=0.8895;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 206648378 rs1059704 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.36;AMR_AF=0.62;AN=2;ASN_AF=0.39;AVGPOST=0.9955;ERATE=0.0134;EUR_AF=0.68;LDAF=0.5246;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 206652427 rs2297542 C G 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.0041;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.0013;LDAF=0.0079;RSQ=0.9866;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 206680983 rs2095124 A C 100 PASS AA=C;AC=1;AF=0.92;AFR_AF=0.97;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9797;ERATE=0.0007;EUR_AF=0.86;LDAF=0.9180;RSQ=0.8938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-2.74,-0.26,-0.35 +1 206769047 rs11584983 T C 100 PASS AA=T;AC=2;AF=0.26;AFR_AF=0.35;AMR_AF=0.22;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2569;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 206773659 rs6662929 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9991;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 206810946 rs17013271 C T 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.33;AN=2;ASN_AF=0.08;AVGPOST=0.9998;ERATE=0.0004;EUR_AF=0.40;LDAF=0.2793;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 206902471 rs45514798 G A 100 PASS 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AA=C;AC=2;AF=0.65;AFR_AF=0.81;AMR_AF=0.72;AN=2;ASN_AF=0.29;AVGPOST=0.9996;ERATE=0.0031;EUR_AF=0.78;LDAF=0.6466;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +1 207195779 rs2842726 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.99;LDAF=0.9949;RSQ=0.9874;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 207262980 rs12711513 T G 100 PASS AA=G;AC=2;AF=0.62;AFR_AF=0.52;AMR_AF=0.60;AN=2;ASN_AF=0.88;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.49;LDAF=0.6152;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 207263829 rs6690037 A G 100 PASS AA=A;AC=2;AF=0.47;AFR_AF=0.06;AMR_AF=0.51;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.48;LDAF=0.4716;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 207297484 rs2842707 G C 100 PASS 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AA=T;AC=1;AF=0.14;AFR_AF=0.27;AMR_AF=0.12;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1431;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 211836789 rs12031285 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.34;AMR_AF=0.32;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.23;LDAF=0.2802;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 211840498 rs2230489 T C 100 PASS AA=T;AC=1;AF=0.17;AFR_AF=0.17;AMR_AF=0.17;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.13;LDAF=0.1742;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 211846876 rs701929 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.52;AMR_AF=0.60;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 212273639 rs3135474 C T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.92;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.96;LDAF=0.9662;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 212274413 rs6540718 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 212560327 rs792449 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9927;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 212615875 rs521469 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.66;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.38;LDAF=0.4936;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 212619339 rs4804 T C 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.4927;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 212788567 rs2229346 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0818;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 212791621 rs8192660 T C 100 PASS AA=C;AC=1;AF=0.11;AFR_AF=0.09;AMR_AF=0.19;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.1056;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 212798601 rs17019481 C A 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.0041;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0818;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 212798977 rs3122712 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.46;AMR_AF=0.24;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0006;EUR_AF=0.26;LDAF=0.2606;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 212799870 rs3122713 A G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.77;AMR_AF=0.77;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.85;LDAF=0.7614;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 212870292 rs2233925 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.24;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1650;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 212911836 rs15702 T C 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.67;AMR_AF=0.51;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.6088;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 212960866 rs3738800 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.03;AMR_AF=0.39;AN=2;ASN_AF=0.37;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.17;LDAF=0.2275;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 212965095 rs17856201 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.33;AMR_AF=0.13;AN=2;ASN_AF=0.14;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1823;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 212965284 rs61736926 C G 100 PASS AA=G;AC=1;AF=0.21;AFR_AF=0.44;AMR_AF=0.13;AN=2;ASN_AF=0.16;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2150;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 213009469 rs10864004 A G 100 PASS AA=G;AC=1;AF=0.67;AFR_AF=0.82;AMR_AF=0.53;AN=2;ASN_AF=0.54;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.75;LDAF=0.6739;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 213031948 rs11120047 G C 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.26;AMR_AF=0.36;AN=2;ASN_AF=0.55;AVGPOST=0.9799;ERATE=0.0050;EUR_AF=0.54;LDAF=0.4505;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.69,-0.10 +1 213032568 rs12023052 T A 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.25;AMR_AF=0.34;AN=2;ASN_AF=0.53;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.52;LDAF=0.4334;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 213056819 rs2644547 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9967;RSQ=0.8927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +1 213061362 rs2291772 T A 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.16;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2833;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 213068404 rs17019870 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2820;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 213068436 rs17019873 A G 100 PASS AA=A;AC=1;AF=0.28;AFR_AF=0.16;AMR_AF=0.41;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2820;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 213124871 rs3123305 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.11;AMR_AF=0.27;AN=2;ASN_AF=0.40;AVGPOST=0.9834;ERATE=0.0015;EUR_AF=0.46;LDAF=0.3346;RSQ=0.9711;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-2.36,-0.01,-1.68 +1 213178340 rs11120076 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.08;AMR_AF=0.40;AN=2;ASN_AF=0.50;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4470;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 213224719 rs4951476 T C 100 PASS AA=C;AC=1;AF=0.71;AFR_AF=0.89;AMR_AF=0.63;AN=2;ASN_AF=0.60;AVGPOST=0.9971;ERATE=0.0005;EUR_AF=0.72;LDAF=0.7128;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.01 +1 214492286 rs1134647 G A 100 PASS AA=A;AC=1;AF=0.82;AFR_AF=1.00;AMR_AF=0.77;AN=2;ASN_AF=0.59;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.92;LDAF=0.8226;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 214503489 rs2291830 T G 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.54;AMR_AF=0.46;AN=2;ASN_AF=0.58;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5516;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 214510115 rs11120301 T G 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.0020;AMR_AF=0.16;AN=2;ASN_AF=0.30;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1060;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 214542819 rs1135352 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.96;AMR_AF=0.68;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7637;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 214551276 rs3013451 G A 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.96;AMR_AF=0.68;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7692;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 214564340 rs7550799 T C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.99;AMR_AF=0.69;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.80;LDAF=0.7636;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 214571251 rs11580603 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.37;AMR_AF=0.42;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.42;LDAF=0.4064;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 214638172 rs10864100 C T 100 PASS 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AA=A;AC=1;AF=0.22;AFR_AF=0.46;AMR_AF=0.22;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.09;LDAF=0.2171;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 214826196 rs335524 G A 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.30;AMR_AF=0.54;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.47;LDAF=0.5603;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 214826364 rs335523 G A 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.28;AMR_AF=0.50;AN=2;ASN_AF=0.88;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5398;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 214830617 rs438034 A G 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.35;AMR_AF=0.61;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.6207;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 214837110 rs7289 C G 100 PASS 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AA=C;AC=1;AF=0.38;AFR_AF=0.36;AMR_AF=0.42;AN=2;ASN_AF=0.52;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3765;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 222713631 rs3748666 G C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.36;AMR_AF=0.42;AN=2;ASN_AF=0.52;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.26;LDAF=0.3766;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 222721288 rs4846382 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.33;AMR_AF=0.68;AN=2;ASN_AF=0.66;AVGPOST=0.9967;ERATE=0.0003;EUR_AF=0.61;LDAF=0.5718;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222734803 rs1134898 G C 100 PASS AA=G;AC=2;AF=0.36;AFR_AF=0.04;AMR_AF=0.38;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.3556;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222751034 rs2936033 T C 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.38;AMR_AF=0.55;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.76;LDAF=0.5919;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222798106 rs3008617 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9986;RSQ=0.9709;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 222802006 rs2936053 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9968;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222802803 rs3748626 T G 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.27;AMR_AF=0.56;AN=2;ASN_AF=0.59;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5589;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222802926 rs3008620 C T 100 PASS AA=T;AC=2;AF=0.83;AFR_AF=0.60;AMR_AF=0.89;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8305;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222823743 rs67180937 T G 100 PASS AA=T;AC=2;AF=0.54;AFR_AF=0.18;AMR_AF=0.57;AN=2;ASN_AF=0.59;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.73;LDAF=0.5436;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.50,-0.00 +1 222825403 rs3002150 G A 100 PASS AA=A;AC=2;AF=0.95;AFR_AF=0.94;AMR_AF=0.97;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9479;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222825717 rs10495198 T C 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.18;AMR_AF=0.57;AN=2;ASN_AF=0.61;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.73;LDAF=0.5481;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222826481 rs2291832 G A 100 PASS AA=G;AC=2;AF=0.54;AFR_AF=0.15;AMR_AF=0.56;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0006;EUR_AF=0.73;LDAF=0.5352;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222833601 rs3002153 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9963;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 222919895 rs2378607 T G 100 PASS AA=t;AC=1;AF=0.63;AFR_AF=0.27;AMR_AF=0.71;AN=2;ASN_AF=0.81;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6340;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 222923351 rs6683071 A G 100 PASS AA=N;AC=2;AF=0.81;AFR_AF=0.76;AMR_AF=0.85;AN=2;ASN_AF=0.83;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8144;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 223156382 rs2926159 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9991;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 223177974 rs76611705 G A 100 PASS AA=A;AC=1;AF=0.02;AMR_AF=0.01;AN=2;ASN_AF=0.06;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0210;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 223178477 rs72744122 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.01;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0219;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 223178561 rs9441941 A C 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.42;AMR_AF=0.56;AN=2;ASN_AF=0.48;AVGPOST=0.9997;ERATE=0.0013;EUR_AF=0.60;LDAF=0.5246;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 223283910 rs7512943 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 223284528 rs5744174 A G 100 PASS AA=G;AC=2;AF=0.28;AFR_AF=0.14;AMR_AF=0.34;AN=2;ASN_AF=0.18;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.41;LDAF=0.2769;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 223900408 rs25655 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.96;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9903;RSQ=0.9557;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.79,-0.01 +1 223905532 rs3738383 G A 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.39;AMR_AF=0.68;AN=2;ASN_AF=0.60;AVGPOST=0.9999;ERATE=0.0010;EUR_AF=0.77;LDAF=0.6280;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 223934720 rs17600 G A 100 PASS AA=G;AC=2;AF=0.69;AFR_AF=0.31;AMR_AF=0.76;AN=2;ASN_AF=0.72;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.90;LDAF=0.6952;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 223938565 rs1153968 A C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.89;AMR_AF=0.42;AN=2;ASN_AF=0.45;AVGPOST=0.9866;ERATE=0.0162;EUR_AF=0.33;LDAF=0.5034;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:0.800:-2.36,-0.00,-5.00 +1 223954080 rs17599 A C 100 PASS AA=A;AC=2;AF=0.21;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0008;EUR_AF=0.25;LDAF=0.2130;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 224001963 rs76208122 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0060;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 224345012 rs7543762 G A 100 PASS AA=A;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9936;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 224437889 rs78473436 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0348;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 224492746 rs3754090 C T 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.55;AMR_AF=0.93;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.97;LDAF=0.8497;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 224495852 rs7534447 C T 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.56;AMR_AF=0.93;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.97;LDAF=0.8510;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 224517842 rs2896990 C T 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.57;AMR_AF=0.93;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.97;LDAF=0.8542;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.62,-0.00 +1 224872473 rs3738363 A G 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.37;AMR_AF=0.14;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.17;LDAF=0.1984;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 225142710 rs41267347 A T 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0394;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 225600169 rs112582692 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0297;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 225600383 rs16844850 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.02;AMR_AF=0.03;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0297;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 225607144 rs2230419 C T 100 PASS AA=c;AC=2;AF=0.78;AFR_AF=0.41;AMR_AF=0.85;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.84;LDAF=0.7765;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 225609884 rs1056608 A G 100 PASS AA=A;AC=1;AF=0.74;AFR_AF=0.36;AMR_AF=0.83;AN=2;ASN_AF=0.92;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.80;LDAF=0.7363;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 225611661 rs1056607 C T 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.66;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9993;ERATE=0.0027;EUR_AF=0.71;LDAF=0.7259;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 226016381 rs41266229 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.21;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2588;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 226016397 rs41266231 G A 100 PASS AA=G;AC=1;AF=0.27;AFR_AF=0.26;AMR_AF=0.25;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2719;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 226033083 rs4653695 A C 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.09;AVGPOST=0.9949;ERATE=0.0005;EUR_AF=0.12;LDAF=0.0992;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-2.09 +1 226040404 rs1009668 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.10;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1002;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 226074563 rs360057 T G 100 PASS AA=t;AC=2;AF=0.29;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.21;AVGPOST=0.9954;ERATE=0.0006;EUR_AF=0.41;LDAF=0.2904;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.85,-0.00 +1 226108200 rs73131849 C T 100 PASS AA=c;AC=1;AF=0.19;AFR_AF=0.30;AMR_AF=0.23;AN=2;ASN_AF=0.10;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.17;LDAF=0.1889;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 226109284 rs56362902 G A 100 PASS AA=g;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9992;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0178;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 226127443 rs74578461 G C 100 PASS AA=g;AC=2;AF=0.31;AFR_AF=0.38;AMR_AF=0.38;AN=2;ASN_AF=0.16;AVGPOST=0.9538;ERATE=0.0047;EUR_AF=0.34;LDAF=0.3119;RSQ=0.9199;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:1.900:-0.88,-0.39,-0.34 +1 226253316 rs1849032 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.93;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9835;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 226352498 rs2306120 T G 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.61;AMR_AF=0.62;AN=2;ASN_AF=0.46;AVGPOST=0.9979;ERATE=0.0027;EUR_AF=0.63;LDAF=0.5796;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 226353521 rs2306121 T A 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.51;AMR_AF=0.40;AN=2;ASN_AF=0.38;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4333;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 226474132 rs10799347 G A 100 PASS AA=G;AC=2;AF=0.72;AFR_AF=0.73;AMR_AF=0.66;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7180;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 226488826 rs11577454 A G 100 PASS AA=G;AC=1;AF=0.25;AFR_AF=0.17;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.31;LDAF=0.2495;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 226570840 rs1805415 T C 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.89;AMR_AF=0.67;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.7422;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 226578099 rs1805403 T C 100 PASS AA=t;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.81;AN=2;ASN_AF=0.93;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.78;LDAF=0.8670;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 226923505 rs708776 G T 100 PASS AA=T;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9730;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +1 227069677 rs11405 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.83;AMR_AF=0.74;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7443;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 227069737 rs6759 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.35;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.60;LDAF=0.4822;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 227071364 rs1295643 G A 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.35;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.60;LDAF=0.4821;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 227071377 rs1295644 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.53;AMR_AF=0.67;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.81;LDAF=0.6540;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 227071525 rs1046240 C T 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.35;AMR_AF=0.53;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.4822;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 227073410 rs2236910 G C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.83;AMR_AF=0.74;AN=2;ASN_AF=0.59;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7443;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 227078955 rs2802267 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.80;AMR_AF=0.73;AN=2;ASN_AF=0.62;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.81;LDAF=0.7438;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-3.55,-0.00,-5.00 +1 227081850 rs2855562 G A 100 PASS AA=A;AC=1;AF=0.59;AFR_AF=0.46;AMR_AF=0.64;AN=2;ASN_AF=0.62;AVGPOST=0.9994;ERATE=0.0010;EUR_AF=0.63;LDAF=0.5897;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 227172290 rs12593 C T 100 PASS AA=C;AC=2;AF=0.28;AFR_AF=0.18;AMR_AF=0.30;AN=2;ASN_AF=0.17;AVGPOST=0.9993;ERATE=0.0041;EUR_AF=0.43;LDAF=0.2816;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227172935 rs2297416 C G 100 PASS AA=C;AC=2;AF=0.29;AFR_AF=0.23;AMR_AF=0.31;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.44;LDAF=0.2959;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227174145 rs7552783 T C 100 PASS AA=C;AC=2;AF=0.38;AFR_AF=0.43;AMR_AF=0.35;AN=2;ASN_AF=0.19;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.49;LDAF=0.3757;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227174210 rs3738725 T C 100 PASS AA=C;AC=2;AF=0.34;AFR_AF=0.27;AMR_AF=0.33;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.3382;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227181923 rs3795451 C T 100 PASS AA=C;AC=2;AF=0.31;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.19;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.44;LDAF=0.3125;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.20,-0.03 +1 227182033 rs2802269 G A 100 PASS AA=A;AC=2;AF=0.90;AFR_AF=0.93;AMR_AF=0.89;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.88;LDAF=0.8967;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.09,-0.00 +1 227182575 rs1045247 A G 100 PASS AA=g;AC=2;AF=0.86;AFR_AF=0.97;AMR_AF=0.82;AN=2;ASN_AF=0.83;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.82;LDAF=0.8597;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227216662 rs1929861 T C 100 PASS AA=C;AC=2;AF=0.46;AFR_AF=0.50;AMR_AF=0.41;AN=2;ASN_AF=0.43;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.47;LDAF=0.4570;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227216775 rs1929860 C T 100 PASS AA=T;AC=2;AF=0.33;AFR_AF=0.21;AMR_AF=0.31;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3327;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227221123 rs11582863 G A 100 PASS AA=G;AC=2;AF=0.17;AFR_AF=0.13;AMR_AF=0.14;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1650;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227288655 rs2104863 G A 100 PASS AA=a;AC=2;AF=0.83;AFR_AF=0.80;AMR_AF=0.84;AN=2;ASN_AF=0.89;AVGPOST=0.9839;ERATE=0.0056;EUR_AF=0.81;LDAF=0.8305;RSQ=0.9581;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227330759 rs12139502 A G 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.62;AMR_AF=0.72;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.73;LDAF=0.7057;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 227387361 rs3768434 A G 100 PASS AA=G;AC=2;AF=0.78;AFR_AF=0.90;AMR_AF=0.75;AN=2;ASN_AF=0.62;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.84;LDAF=0.7799;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.59,-0.00 +1 227920061 rs1060295 T G 100 PASS AA=a;AC=1;AF=0.74;AFR_AF=0.96;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.56;LDAF=0.7348;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 227920665 rs41270159 A G 100 PASS AA=.;AC=1;AF=0.03;AFR_AF=0.0041;AMR_AF=0.05;AN=2;ASN_AF=0.0017;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0328;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 227922918 rs2295994 A C 100 PASS AA=A;AC=1;AF=0.41;AFR_AF=0.45;AMR_AF=0.45;AN=2;ASN_AF=0.37;AVGPOST=0.9870;ERATE=0.0007;EUR_AF=0.40;LDAF=0.4136;RSQ=0.9784;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-2.05,-0.00,-4.10 +1 227923081 rs7419238 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9939;ERATE=0.0008;EUR_AF=0.99;LDAF=0.9961;RSQ=0.3820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +1 227935355 rs2236360 T C 100 PASS AA=C;AC=1;AF=0.73;AFR_AF=0.96;AMR_AF=0.70;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.56;LDAF=0.7322;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 227935444 rs2236359 A G 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.47;AMR_AF=0.46;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.4205;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 228003967 rs12121588 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.20;AMR_AF=0.21;AN=2;ASN_AF=0.10;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.26;LDAF=0.1956;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 228033197 rs9426581 A G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.76;AMR_AF=0.77;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.85;LDAF=0.7746;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 228112121 rs4653889 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.66;AMR_AF=0.55;AN=2;ASN_AF=0.40;AVGPOST=0.9979;ERATE=0.0002;EUR_AF=0.49;LDAF=0.5139;RSQ=0.9972;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 228113163 rs3795768 A G 100 PASS AA=G;AC=2;AF=0.68;AFR_AF=0.82;AMR_AF=0.64;AN=2;ASN_AF=0.59;AVGPOST=0.9756;ERATE=0.0028;EUR_AF=0.66;LDAF=0.6741;RSQ=0.9551;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +1 228288896 rs79502515 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.02;AN=2;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0146;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 228289843 rs1128456 C T 100 PASS AA=C;AC=1;AF=0.08;AFR_AF=0.02;AMR_AF=0.09;AN=2;AVGPOST=0.9866;ERATE=0.0012;EUR_AF=0.16;LDAF=0.0768;RSQ=0.9247;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-0.17,-0.49,-2.80 +1 228362682 rs2298014 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.03;AMR_AF=0.29;AN=2;ASN_AF=0.06;AVGPOST=0.9968;ERATE=0.0003;EUR_AF=0.33;LDAF=0.1837;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 228588654 rs35670307 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.0020;AMR_AF=0.04;AN=2;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0372;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-1.99,-0.00,-5.00 +1 228588680 rs11555960 A C 100 PASS AA=t;AC=1;AF=0.23;AFR_AF=0.28;AMR_AF=0.16;AN=2;ASN_AF=0.40;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.11;LDAF=0.2335;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-0.74,-0.09,-5.00 +1 228597130 rs61827276 G A 100 PASS AA=g;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.04;AN=2;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0409;RSQ=0.9856;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.96 +1 228601638 rs472594 T C 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.81;AMR_AF=0.35;AN=2;ASN_AF=0.46;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.21;LDAF=0.4336;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 228602660 rs503203 G C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.65;AMR_AF=0.12;AN=2;ASN_AF=0.33;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.10;LDAF=0.2880;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 228612838 rs2230656 G T 100 PASS AA=g;AC=1;AF=0.70;AFR_AF=0.32;AMR_AF=0.88;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.7006;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 228613052 rs1188474 T C 100 PASS AA=c;AC=1;AF=0.85;AFR_AF=0.91;AMR_AF=0.94;AN=2;ASN_AF=0.67;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8463;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 229422193 rs237764 T C 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.6394;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 229613399 rs142046957 G T 100 PASS AA=G;AC=1;AF=0.0009;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.0013;LDAF=0.0009;RSQ=0.9768;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 229730452 rs2295625 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.08;AMR_AF=0.33;AN=2;ASN_AF=0.33;AVGPOST=0.9992;ERATE=0.0054;EUR_AF=0.46;LDAF=0.3221;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 229738236 rs4925500 G A 100 PASS AA=A;AC=1;AF=0.85;AFR_AF=0.93;AMR_AF=0.77;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.76;LDAF=0.8477;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 229783236 rs6587349 T C 100 PASS AA=C;AC=1;AF=0.94;AFR_AF=0.98;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.88;LDAF=0.9420;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 230415025 rs6698963 A G 100 PASS AA=A;AC=1;AF=0.70;AFR_AF=0.89;AMR_AF=0.57;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.6979;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 230795177 rs1359866 T C 100 PASS AA=C;AC=1;AF=0.74;AFR_AF=0.79;AMR_AF=0.70;AN=2;ASN_AF=0.91;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.60;LDAF=0.7380;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 230825942 rs3000064 A G 100 PASS AA=A;AC=2;AF=0.25;AFR_AF=0.10;AMR_AF=0.25;AN=2;ASN_AF=0.12;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.45;LDAF=0.2507;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 230841687 rs7080 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9592;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 230883466 rs12143120 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.38;AMR_AF=0.45;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4036;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 230883484 rs6690251 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5667;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.55,-0.00 +1 230883499 rs6690254 T C 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.72;LDAF=0.5671;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.77,-0.00 +1 230898494 rs2282319 C T 100 PASS AA=T;AC=2;AF=0.39;AFR_AF=0.27;AMR_AF=0.45;AN=2;ASN_AF=0.45;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.38;LDAF=0.3871;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 230903350 rs3828126 T C 100 PASS AA=C;AC=2;AF=0.27;AFR_AF=0.18;AMR_AF=0.32;AN=2;ASN_AF=0.22;AVGPOST=0.9993;ERATE=0.0005;EUR_AF=0.34;LDAF=0.2685;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 230904911 rs11122593 C T 100 PASS AA=C;AC=2;AF=0.21;AFR_AF=0.02;AMR_AF=0.31;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2103;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 230933898 rs2297831 C T 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.04;AMR_AF=0.28;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.25;LDAF=0.1741;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 231042732 rs3811502 T A 100 PASS AA=T;AC=2;AF=0.53;AFR_AF=0.44;AMR_AF=0.61;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.54;LDAF=0.5320;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 231060736 rs3748775 T C 100 PASS AA=T;AC=2;AF=0.49;AFR_AF=0.32;AMR_AF=0.59;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4950;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 231061302 rs201187353 C G 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +1 231067236 rs11122624 C T 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.32;AMR_AF=0.59;AN=2;ASN_AF=0.56;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.4950;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 231069652 rs1890351 A C 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.72;AMR_AF=0.75;AN=2;ASN_AF=0.60;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.67;LDAF=0.6736;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 231124099 rs144095931 G A 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 231334780 rs11122249 C A 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.37;AMR_AF=0.08;AN=2;ASN_AF=0.05;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1309;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 231377081 rs518686 C T 100 PASS AA=C;AC=2;AF=0.55;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.61;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.50;LDAF=0.5515;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 231401204 rs6702011 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.25;AMR_AF=0.31;AN=2;ASN_AF=0.21;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.24;LDAF=0.2466;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 231401902 rs574553 G A 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.67;AMR_AF=0.61;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.51;LDAF=0.5919;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 231487017 rs2474634 T C 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.36;AMR_AF=0.56;AN=2;ASN_AF=0.55;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5566;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 231488524 rs2437150 C T 100 PASS AA=C;AC=1;AF=0.56;AFR_AF=0.40;AMR_AF=0.56;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.67;LDAF=0.5566;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 231502245 rs1435167 T A 100 PASS AA=t;AC=1;AF=0.45;AFR_AF=0.34;AMR_AF=0.46;AN=2;ASN_AF=0.45;AVGPOST=0.9816;ERATE=0.0327;EUR_AF=0.52;LDAF=0.4497;RSQ=0.9560;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 231697030 rs1982095 G A 100 PASS AA=a;AC=2;AF=0.45;AFR_AF=0.72;AMR_AF=0.52;AN=2;ASN_AF=0.33;AVGPOST=0.9985;ERATE=0.0004;EUR_AF=0.34;LDAF=0.4510;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 231830295 rs3738401 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.14;AMR_AF=0.39;AN=2;ASN_AF=0.26;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2809;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 232534957 rs12043251 T C 100 PASS AA=C;AC=1;AF=0.42;AFR_AF=0.26;AMR_AF=0.42;AN=2;ASN_AF=0.73;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4175;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 232535030 rs629939 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9968;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 232607094 rs12116822 T C 100 PASS AA=t;AC=1;AF=0.23;AFR_AF=0.23;AMR_AF=0.37;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.22;LDAF=0.2317;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 232650750 rs3795366 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.98;AMR_AF=0.86;AN=2;ASN_AF=0.47;AVGPOST=0.9994;ERATE=0.0013;EUR_AF=0.95;LDAF=0.8161;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 232650867 rs4649383 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.48;AMR_AF=0.66;AN=2;ASN_AF=0.31;AVGPOST=0.9968;ERATE=0.0003;EUR_AF=0.80;LDAF=0.5813;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 232941153 rs12409898 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.11;AMR_AF=0.65;AN=2;ASN_AF=0.64;AVGPOST=0.9961;ERATE=0.0005;EUR_AF=0.71;LDAF=0.5465;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 233091463 rs12725558 T A 100 PASS AA=T;AC=1;AF=0.11;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.16;LDAF=0.1088;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 233225848 rs12059884 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.33;AMR_AF=0.12;AN=2;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.10;LDAF=0.1294;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233388242 rs6682865 A G 100 PASS AA=G;AC=1;AF=0.03;AFR_AF=0.07;AMR_AF=0.02;AN=2;ASN_AF=0.01;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.02;LDAF=0.0266;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 233397752 rs6701073 T C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2455;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233398670 rs12132556 C A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2454;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233398713 rs1033325 C T 100 PASS AA=T;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2449;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233398927 rs1033324 C G 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.21;AMR_AF=0.23;AN=2;ASN_AF=0.16;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.34;LDAF=0.2451;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233489529 rs7549137 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5027;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233489707 rs7551511 G T 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5028;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233490543 rs2049182 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.53;AMR_AF=0.58;AN=2;ASN_AF=0.55;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.41;LDAF=0.5026;RSQ=0.9995;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233498026 rs56052041 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0242;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 233515209 rs142593417 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 234529519 rs1802871 C T 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.51;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 234529540 rs1134756 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.51;AMR_AF=0.17;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1856;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 234529552 rs2175594 C T 100 PASS 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AA=T;AC=1;AF=0.17;AFR_AF=0.18;AMR_AF=0.20;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1746;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 234582720 rs139816698 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0020;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 234584176 rs115691704 T G 100 PASS AA=T;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0169;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 234584288 rs114916639 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0169;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 235357543 rs10802438 A G 100 PASS AA=A;AC=2;AF=0.27;AFR_AF=0.06;AMR_AF=0.38;AN=2;ASN_AF=0.25;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.37;LDAF=0.2698;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 235383188 rs4659654 A G 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4278;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 235392546 rs12731746 T C 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.46;AMR_AF=0.50;AN=2;ASN_AF=0.27;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.49;LDAF=0.4269;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 235394541 rs7518225 A C 100 PASS AA=C;AC=2;AF=0.43;AFR_AF=0.46;AMR_AF=0.51;AN=2;ASN_AF=0.27;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.49;LDAF=0.4272;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.31,-0.00 +1 235505849 rs146421372 G C 100 PASS AA=G;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0007;RSQ=0.8031;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +1 235628908 rs1305556 G A 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.59;AMR_AF=0.70;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0005;EUR_AF=0.52;LDAF=0.6513;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 235647631 rs291387 G T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.60;AMR_AF=0.71;AN=2;ASN_AF=0.85;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.52;LDAF=0.6545;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 235652513 rs291396 T C 100 PASS AA=C;AC=2;AF=0.65;AFR_AF=0.60;AMR_AF=0.71;AN=2;ASN_AF=0.85;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.52;LDAF=0.6545;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 235715523 rs14326 A G 100 PASS AA=A;AC=1;AF=0.62;AFR_AF=0.58;AMR_AF=0.60;AN=2;ASN_AF=0.81;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.51;LDAF=0.6191;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 235715556 rs423026 C G 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.55;AMR_AF=0.59;AN=2;ASN_AF=0.81;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.51;LDAF=0.6123;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 236175327 rs3738531 C A 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.12;AMR_AF=0.23;AN=2;ASN_AF=0.26;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1606;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 236175339 rs2031487 T C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.78;AMR_AF=0.60;AN=2;ASN_AF=0.75;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.50;LDAF=0.6445;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +1 236180498 rs140374909 C T 100 PASS AA=C;AC=1;AF=0.0046;AMR_AF=0.01;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0046;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 236180580 rs3768081 C G 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.36;AMR_AF=0.36;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0010;EUR_AF=0.10;LDAF=0.3556;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 236187365 rs3738533 T C 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.21;AMR_AF=0.27;AN=2;ASN_AF=0.28;AVGPOST=0.9996;ERATE=0.0017;EUR_AF=0.10;LDAF=0.1990;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 236343166 rs201452454 C T 100 PASS AA=C;AC=1;AF=0.0005;AMR_AF=0.0028;AN=2;AVGPOST=0.9999;ERATE=0.0003;LDAF=0.0004;RSQ=0.8999;SNPSOURCE=EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:0.900:-5.00,0.00,-5.00 +1 236413230 rs2477599 T A 100 PASS AA=T;AC=2;AF=0.35;AFR_AF=0.15;AMR_AF=0.36;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.62;LDAF=0.3451;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236444973 rs1269025 C T 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.19;AMR_AF=0.26;AN=2;ASN_AF=0.34;AVGPOST=0.9565;ERATE=0.0040;EUR_AF=0.32;LDAF=0.2937;RSQ=0.9250;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.950:-0.19,-0.46,-2.45 +1 236557771 rs966365 G A 100 PASS AA=G;AC=2;AF=0.77;AFR_AF=0.46;AMR_AF=0.84;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.81;LDAF=0.7687;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236572475 rs669710 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.48;AMR_AF=0.51;AN=2;ASN_AF=0.27;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.59;LDAF=0.4695;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 236590659 rs636048 G C 100 PASS AA=G;AC=1;AF=0.39;AFR_AF=0.18;AMR_AF=0.46;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.60;LDAF=0.3940;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 236700807 rs2737713 T A 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.47;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5594;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236700823 rs1041934 T C 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.47;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5594;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236700857 rs1041935 C T 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.47;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5594;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236702153 rs2244808 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.46;AMR_AF=0.54;AN=2;ASN_AF=0.48;AVGPOST=0.9996;ERATE=0.0013;EUR_AF=0.68;LDAF=0.5547;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236702209 rs1041936 C T 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.17;AMR_AF=0.42;AN=2;ASN_AF=0.41;AVGPOST=0.9927;ERATE=0.0052;EUR_AF=0.45;LDAF=0.3718;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.52,-0.00 +1 236702210 rs1041937 A G 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.61;AMR_AF=0.58;AN=2;ASN_AF=0.60;AVGPOST=0.9887;ERATE=0.0004;EUR_AF=0.57;LDAF=0.5912;RSQ=0.9860;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.10,-0.00 +1 236702374 rs2472126 G A 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.49;AVGPOST=0.9965;ERATE=0.0063;EUR_AF=0.65;LDAF=0.5143;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 236706352 rs2758174 A C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.46;AMR_AF=0.55;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5599;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236706371 rs2758175 A G 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.46;AMR_AF=0.55;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5599;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236706862 rs2243525 G C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.71;AMR_AF=0.75;AN=2;ASN_AF=0.70;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7221;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236708224 rs2244063 A C 100 PASS AA=A;AC=2;AF=0.56;AFR_AF=0.46;AMR_AF=0.55;AN=2;ASN_AF=0.49;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5599;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236711297 rs2254823 A T 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.46;AMR_AF=0.55;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5599;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236711323 rs15701 T C 100 PASS AA=T;AC=2;AF=0.56;AFR_AF=0.46;AMR_AF=0.55;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5599;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236714335 rs2254487 C T 100 PASS AA=c;AC=2;AF=0.48;AFR_AF=0.23;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.64;LDAF=0.4849;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.29,-0.00 +1 236716959 rs2275685 C T 100 PASS AA=c;AC=2;AF=0.55;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5471;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236717926 rs2275687 T C 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5471;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236718561 rs6668926 G A 100 PASS AA=G;AC=2;AF=0.55;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5471;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236718620 rs1126627 T C 100 PASS AA=T;AC=2;AF=0.55;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5471;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236719135 rs1885532 T C 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.86;AMR_AF=0.87;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8684;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236719193 rs1885533 A G 100 PASS AA=A;AC=2;AF=0.55;AFR_AF=0.41;AMR_AF=0.54;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5475;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236719259 rs1885534 G A 100 PASS AA=G;AC=2;AF=0.42;AFR_AF=0.06;AMR_AF=0.49;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4200;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236721610 rs2275688 G A 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.60;AMR_AF=0.64;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6590;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236721660 rs2275689 T C 100 PASS AA=C;AC=2;AF=0.72;AFR_AF=0.71;AMR_AF=0.75;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.73;LDAF=0.7208;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236721731 rs819431 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236723177 rs10754576 G A 100 PASS AA=G;AC=2;AF=0.43;AFR_AF=0.20;AMR_AF=0.47;AN=2;ASN_AF=0.45;AVGPOST=0.9829;ERATE=0.0008;EUR_AF=0.54;LDAF=0.4318;RSQ=0.9776;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236723178 rs10754577 C A 100 PASS AA=C;AC=2;AF=0.42;AFR_AF=0.19;AMR_AF=0.46;AN=2;ASN_AF=0.44;AVGPOST=0.9839;ERATE=0.0040;EUR_AF=0.53;LDAF=0.4211;RSQ=0.9793;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236724504 rs1077439 G A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.46;AMR_AF=0.63;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6243;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236724605 rs1077438 G T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.46;AMR_AF=0.63;AN=2;ASN_AF=0.66;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6243;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236740039 rs6658793 G C 100 PASS AA=C;AC=2;AF=0.62;AFR_AF=0.46;AMR_AF=0.62;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.70;LDAF=0.6193;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236744712 rs4518892 C A 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.15;AMR_AF=0.53;AN=2;ASN_AF=0.49;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.67;LDAF=0.4826;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236746275 rs2794769 G C 100 PASS AA=G;AC=2;AF=0.58;AFR_AF=0.33;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.68;LDAF=0.5806;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236746443 rs2794768 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.32;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5790;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236748505 rs1006456 T C 100 PASS AA=T;AC=2;AF=0.58;AFR_AF=0.32;AMR_AF=0.59;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5791;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236749649 rs2794763 T C 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.06;AMR_AF=0.50;AN=2;ASN_AF=0.49;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.62;LDAF=0.4411;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236755427 rs2794759 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6124;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236755814 rs2794757 G A 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6124;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.47,-0.00 +1 236755837 rs2564739 C T 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6124;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.40,-0.00 +1 236758887 rs2794751 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.36;AMR_AF=0.60;AN=2;ASN_AF=0.73;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.69;LDAF=0.6124;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236767330 rs10802551 A G 100 PASS AA=A;AC=2;AF=0.63;AFR_AF=0.35;AMR_AF=0.69;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.68;LDAF=0.6316;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236882303 rs1341864 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9931;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236883421 rs1341863 C T 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.84;AMR_AF=0.89;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9374;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236902560 rs7527525 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.11;AMR_AF=0.48;AN=2;ASN_AF=0.45;AVGPOST=0.9956;ERATE=0.0041;EUR_AF=0.65;LDAF=0.4476;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 236902594 rs2288601 C G 100 PASS AA=G;AC=2;AF=0.76;AFR_AF=0.74;AMR_AF=0.75;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.78;LDAF=0.7601;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 236902865 rs2288602 A C 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.12;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0008;EUR_AF=0.66;LDAF=0.4690;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 236924506 rs2282366 A G 100 PASS AA=a;AC=2;AF=0.82;AFR_AF=0.79;AMR_AF=0.84;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.89;LDAF=0.8174;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 237001926 rs3820568 A G 100 PASS AA=a;AC=1;AF=0.37;AFR_AF=0.21;AMR_AF=0.43;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.39;LDAF=0.3739;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 237038008 rs61127739 T A 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.37;AMR_AF=0.42;AN=2;ASN_AF=0.44;AVGPOST=0.9424;ERATE=0.0936;EUR_AF=0.38;LDAF=0.4124;RSQ=0.8834;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 237038161 rs1770449 T C 100 PASS AA=T;AC=1;AF=0.26;AFR_AF=0.04;AMR_AF=0.31;AN=2;ASN_AF=0.20;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.42;LDAF=0.2601;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 237048562 rs2275566 G A 100 PASS AA=A;AC=1;AF=0.73;AFR_AF=0.93;AMR_AF=0.69;AN=2;ASN_AF=0.80;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7334;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 237054569 rs2229276 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.18;AMR_AF=0.42;AN=2;ASN_AF=0.46;AVGPOST=0.9998;ERATE=0.0029;EUR_AF=0.39;LDAF=0.3651;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 237057608 rs2297965 G A 100 PASS AA=G;AC=1;AF=0.55;AFR_AF=0.50;AMR_AF=0.60;AN=2;ASN_AF=0.58;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5544;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 237058744 rs12070777 C A 100 PASS AA=C;AC=1;AF=0.36;AFR_AF=0.19;AMR_AF=0.42;AN=2;ASN_AF=0.45;AVGPOST=0.9975;ERATE=0.0018;EUR_AF=0.39;LDAF=0.3652;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.00 +1 237058828 rs1131449 C T 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.51;AMR_AF=0.57;AN=2;ASN_AF=0.57;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.53;LDAF=0.5430;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 237060433 rs3820571 G T 100 PASS AA=T;AC=1;AF=0.72;AFR_AF=0.90;AMR_AF=0.67;AN=2;ASN_AF=0.80;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.58;LDAF=0.7221;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 240256171 rs142232913 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9947;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0078;RSQ=0.7180;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.94,-0.05 +1 240256822 rs10926124 C A 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.31;AVGPOST=0.9963;ERATE=0.0004;EUR_AF=0.52;LDAF=0.3485;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 240341268 rs3765588 A G 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.35;AMR_AF=0.14;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.18;LDAF=0.2162;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 240370934 rs4997328 G C 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.30;AMR_AF=0.16;AN=2;ASN_AF=0.27;AVGPOST=0.9663;ERATE=0.0109;EUR_AF=0.20;LDAF=0.2311;RSQ=0.9262;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:0.550:-0.04,-1.06,-5.00 +1 240370985 rs111896385 C T 100 PASS AA=C;AC=1;AF=0.18;AFR_AF=0.13;AMR_AF=0.16;AN=2;ASN_AF=0.22;AVGPOST=0.9897;ERATE=0.0012;EUR_AF=0.20;LDAF=0.1835;RSQ=0.9735;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-4.70 +1 240492414 rs6677726 T C 100 PASS AA=T;AC=1;AF=0.15;AFR_AF=0.25;AMR_AF=0.19;AN=2;ASN_AF=0.17;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.1536;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 240492734 rs3795677 G A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.34;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.30;LDAF=0.3232;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 240497265 rs10157874 A C 100 PASS AA=C;AC=2;AF=0.64;AFR_AF=0.88;AMR_AF=0.70;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.52;LDAF=0.6444;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 240656824 rs10926280 C A 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.05;AMR_AF=0.41;AN=2;ASN_AF=0.35;AVGPOST=0.9953;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3109;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 241519098 rs4659599 T A 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9602;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 241712134 rs12410855 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.54;AMR_AF=0.40;AN=2;ASN_AF=0.31;AVGPOST=0.9967;ERATE=0.0047;EUR_AF=0.32;LDAF=0.3802;RSQ=0.9948;SNPSOURCE=LOWCOV,EXOME;THETA=0.0109;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 241767930 rs632966 G A 100 PASS AA=A;AC=2;AF=0.91;AFR_AF=0.95;AMR_AF=0.90;AN=2;ASN_AF=0.82;AVGPOST=0.9996;ERATE=0.0007;EUR_AF=0.95;LDAF=0.9103;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 242030151 rs735943 A G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.60;AMR_AF=0.67;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.58;LDAF=0.6522;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 242042301 rs1047840 G A 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.53;AMR_AF=0.34;AN=2;ASN_AF=0.23;AVGPOST=0.9979;ERATE=0.0411;EUR_AF=0.36;LDAF=0.3603;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 242042545 rs1776148 A G 100 PASS AA=G;AC=2;AF=0.71;AFR_AF=0.67;AMR_AF=0.69;AN=2;ASN_AF=0.82;AVGPOST=0.9970;ERATE=0.0043;EUR_AF=0.65;LDAF=0.7061;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0128;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 242042690 rs1418760 A G 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.65;AMR_AF=0.84;AN=2;ASN_AF=0.72;AVGPOST=0.9941;ERATE=0.0034;EUR_AF=0.81;LDAF=0.7546;RSQ=0.9887;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +1 242045275 rs1635498 C T 100 PASS AA=C;AC=2;AF=0.92;AFR_AF=0.87;AMR_AF=0.98;AN=2;ASN_AF=0.84;AVGPOST=0.9981;ERATE=0.0036;EUR_AF=0.97;LDAF=0.9158;RSQ=0.9910;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 242048674 rs9350 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.20;AMR_AF=0.28;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2587;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 242159710 rs114367814 G T 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.02;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0266;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 243362331 rs2789172 C T 100 PASS AA=T;AC=1;AF=0.80;AFR_AF=0.66;AMR_AF=0.82;AN=2;ASN_AF=0.90;AVGPOST=0.8369;ERATE=0.0446;EUR_AF=0.82;LDAF=0.7541;RSQ=0.7114;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.050:-5.00,-0.17,-0.48 +1 243493907 rs2275155 A T 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.22;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.33;LDAF=0.2319;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 243579112 rs10927011 G A 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.78;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.50;LDAF=0.4996;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 243777066 rs2168812 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.33;AMR_AF=0.24;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.18;LDAF=0.2362;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 245027349 rs6675421 C T 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.41;AMR_AF=0.33;AN=2;ASN_AF=0.14;AVGPOST=0.9891;ERATE=0.0021;EUR_AF=0.28;LDAF=0.2815;RSQ=0.9807;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.04,-1.08 +1 245245420 rs142888002 C T 100 PASS AA=C;AC=1;AF=0.0041;AMR_AF=0.02;AN=2;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.0026;LDAF=0.0040;RSQ=0.9658;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 245704130 rs61754898 G C 100 PASS AA=G;AC=2;AF=0.14;AFR_AF=0.01;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9875;ERATE=0.0006;EUR_AF=0.14;LDAF=0.1409;RSQ=0.9649;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 245851304 rs6701084 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9934;ERATE=0.0010;EUR_AF=0.98;LDAF=0.9890;RSQ=0.7482;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-4.22,-0.55,-0.14 +1 245912840 rs8025 C T 100 PASS AA=C;AC=2;AF=0.33;AFR_AF=0.30;AMR_AF=0.33;AN=2;ASN_AF=0.51;AVGPOST=0.9999;ERATE=0.0009;EUR_AF=0.22;LDAF=0.3331;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 246078968 rs41305945 G A 100 PASS AA=G;AC=1;AF=0.09;AFR_AF=0.20;AMR_AF=0.08;AN=2;ASN_AF=0.10;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0868;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 246720798 rs3124071 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 246755124 rs6702823 T C 100 PASS AA=C;AC=2;AF=0.89;AFR_AF=0.82;AMR_AF=0.91;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.90;LDAF=0.8857;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 246890158 rs34677128 T C 100 PASS AA=C;AC=2;AF=0.20;AFR_AF=0.43;AMR_AF=0.17;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.10;LDAF=0.1993;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 246922390 rs1127098 A G 100 PASS AA=A;AC=2;AF=0.10;AFR_AF=0.09;AMR_AF=0.15;AN=2;ASN_AF=0.16;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.04;LDAF=0.0974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247150740 rs3749427 T C 100 PASS AA=T;AC=2;AF=0.63;AFR_AF=0.17;AMR_AF=0.70;AN=2;ASN_AF=0.98;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6303;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.17,-0.00 +1 247151557 rs2642992 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.28;AMR_AF=0.71;AN=2;ASN_AF=0.98;AVGPOST=0.9992;ERATE=0.0006;EUR_AF=0.64;LDAF=0.6570;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247162658 rs2642973 C T 100 PASS AA=T;AC=2;AF=0.89;AFR_AF=0.85;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8922;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247163187 rs2818870 T C 100 PASS AA=T;AC=2;AF=0.88;AFR_AF=0.79;AMR_AF=0.91;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.85;LDAF=0.8776;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247267274 rs4925692 C A 100 PASS AA=C;AC=1;AF=0.22;AFR_AF=0.12;AMR_AF=0.30;AN=2;ASN_AF=0.12;AVGPOST=0.9949;ERATE=0.0028;EUR_AF=0.33;LDAF=0.2216;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0042;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.00 +1 247319830 rs74318046 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.17;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0973;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-5.00 +1 247320258 rs41304032 A G 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.19;AMR_AF=0.17;AN=2;ASN_AF=0.0017;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0978;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 247322298 rs6675536 G T 100 PASS AA=T;AC=1;AF=0.40;AFR_AF=0.78;AMR_AF=0.41;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.35;LDAF=0.3985;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 247587531 rs4925543 A G 100 PASS AA=G;AC=2;AF=0.95;AFR_AF=0.88;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.96;LDAF=0.9466;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247592950 rs183128734 C T 100 PASS AA=C;AC=1;AF=0.0014;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0014;RSQ=0.9844;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 247597365 rs10925022 G A 100 PASS AA=-;AC=2;AF=0.94;AFR_AF=0.84;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.95;LDAF=0.9365;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247614617 rs4925663 C T 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.18;AMR_AF=0.44;AN=2;ASN_AF=0.49;AVGPOST=0.9984;ERATE=0.0009;EUR_AF=0.43;LDAF=0.3914;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247614693 rs6695302 C T 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.64;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0021;EUR_AF=1.00;LDAF=0.9147;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247614896 rs11583410 A C 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.12;AMR_AF=0.33;AN=2;ASN_AF=0.49;AVGPOST=0.9957;ERATE=0.0200;EUR_AF=0.46;LDAF=0.3694;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0089;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 247615252 rs12028142 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.14;AN=2;ASN_AF=0.18;AVGPOST=0.9988;ERATE=0.0052;EUR_AF=0.14;LDAF=0.1215;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 247695612 rs6657127 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247695756 rs6697472 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9790;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247752019 rs1151687 G C 100 PASS AA=G;AC=1;AF=0.61;AFR_AF=0.17;AMR_AF=0.69;AN=2;ASN_AF=0.77;AVGPOST=0.9991;ERATE=0.0097;EUR_AF=0.73;LDAF=0.6076;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 247752109 rs61732336 A G 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.09;AN=2;AVGPOST=0.9995;ERATE=0.0036;EUR_AF=0.10;LDAF=0.0736;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 247752161 rs10925085 T C 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.06;AMR_AF=0.35;AN=2;ASN_AF=0.53;AVGPOST=0.9984;ERATE=0.0142;EUR_AF=0.41;LDAF=0.3542;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0153;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 247769592 rs1151683 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.34;AMR_AF=0.35;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3089;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 247835950 rs1151640 T C 100 PASS AA=T;AC=2;AF=0.44;AFR_AF=0.13;AMR_AF=0.56;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0011;EUR_AF=0.42;LDAF=0.4397;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247921100 rs1552812 T G 100 PASS AA=T;AC=2;AF=0.76;AFR_AF=0.43;AMR_AF=0.87;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.7642;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247921352 rs1552813 C T 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.58;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8724;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247921717 rs10888359 C A 100 PASS AA=C;AC=2;AF=0.87;AFR_AF=0.58;AMR_AF=0.92;AN=2;ASN_AF=0.98;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.96;LDAF=0.8728;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247978087 rs10888248 G A 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.55;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9957;ERATE=0.0020;EUR_AF=0.92;LDAF=0.8540;RSQ=0.9899;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247978319 rs6695283 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9982;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 247978996 rs10888249 A G 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.61;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.8707;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248004614 rs6667389 G A 100 PASS AA=G;AC=2;AF=0.87;AFR_AF=0.63;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8657;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248004687 rs10888255 C G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.71;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8830;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248004775 rs10888256 C T 100 PASS AA=T;AC=2;AF=0.90;AFR_AF=0.79;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9036;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248004848 rs4607924 G C 100 PASS AA=C;AC=2;AF=0.90;AFR_AF=0.79;AMR_AF=0.90;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9036;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248004877 rs10888257 C T 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.71;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0004;EUR_AF=0.91;LDAF=0.8840;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248004884 rs1339845 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.90;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9625;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248005213 rs7522811 G C 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.63;AMR_AF=0.87;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8615;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248020556 rs11204523 G C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.44;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9813;ERATE=0.0008;EUR_AF=0.76;LDAF=0.6818;RSQ=0.9686;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +1 248028219 rs946696 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.06;AMR_AF=0.46;AN=2;ASN_AF=0.55;AVGPOST=0.9937;ERATE=0.0035;EUR_AF=0.56;LDAF=0.4273;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-2.78 +1 248058845 rs4500353 A C 100 PASS AA=A;AC=1;AF=0.95;AFR_AF=0.90;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.98;LDAF=0.9470;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248058879 rs6587387 A T 100 PASS AA=T;AC=1;AF=0.95;AFR_AF=0.90;AMR_AF=0.95;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9470;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0197;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248059423 rs10888267 C T 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.17;AMR_AF=0.36;AN=2;ASN_AF=0.52;AVGPOST=0.9959;ERATE=0.0019;EUR_AF=0.54;LDAF=0.4216;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0049;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248059456 rs12135078 G A 100 PASS AA=G;AC=1;AF=0.38;AFR_AF=0.07;AMR_AF=0.35;AN=2;ASN_AF=0.47;AVGPOST=0.9940;ERATE=0.0046;EUR_AF=0.52;LDAF=0.3775;RSQ=0.9914;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248059476 rs12139390 A C 100 PASS AA=A;AC=2;AF=0.59;AFR_AF=0.29;AMR_AF=0.61;AN=2;ASN_AF=0.54;AVGPOST=0.9982;ERATE=0.0024;EUR_AF=0.79;LDAF=0.5848;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0038;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248059703 rs11204545 T A 100 PASS AA=A;AC=1;AF=0.51;AFR_AF=0.29;AMR_AF=0.47;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5124;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248059712 rs11204546 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.29;AMR_AF=0.47;AN=2;ASN_AF=0.54;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5146;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248059856 rs10888268 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.29;AMR_AF=0.46;AN=2;ASN_AF=0.54;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.66;LDAF=0.5119;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0056;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248084434 rs11204563 G A 100 PASS AA=g;AC=1;AF=0.47;AFR_AF=0.15;AMR_AF=0.66;AN=2;ASN_AF=0.34;AVGPOST=0.9885;ERATE=0.0028;EUR_AF=0.69;LDAF=0.4740;RSQ=0.9853;SNPSOURCE=LOWCOV,EXOME;THETA=0.0140;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248084464 rs11204564 T C 100 PASS AA=N;AC=2;AF=0.85;AFR_AF=0.76;AMR_AF=0.89;AN=2;ASN_AF=0.88;AVGPOST=0.9782;ERATE=0.0230;EUR_AF=0.86;LDAF=0.8438;RSQ=0.9319;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.21,-0.00 +1 248084511 rs41315864 T C 100 PASS AA=N;AC=1;AF=0.29;AFR_AF=0.12;AMR_AF=0.43;AN=2;ASN_AF=0.33;AVGPOST=0.9865;ERATE=0.0194;EUR_AF=0.31;LDAF=0.2932;RSQ=0.9778;SNPSOURCE=EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-1.23,-0.03,-5.00 +1 248084579 rs144850929 G A 100 PASS AA=N;AC=1;AF=0.18;AFR_AF=0.23;AMR_AF=0.09;AN=2;ASN_AF=0.27;AVGPOST=0.9698;ERATE=0.0126;EUR_AF=0.12;LDAF=0.1834;RSQ=0.9212;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.03,-1.22 +1 248084609 rs140703773 C T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.90;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9813;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9705;RSQ=0.8002;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-0.48,-0.48,-0.48 +1 248084625 rs6692365 C G 100 PASS AA=c;AC=1;AF=0.54;AFR_AF=0.38;AMR_AF=0.64;AN=2;ASN_AF=0.44;AVGPOST=0.9780;ERATE=0.0006;EUR_AF=0.68;LDAF=0.5439;RSQ=0.9633;SNPSOURCE=EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +1 248084627 rs61857490 C T 100 PASS AA=T;AC=1;AF=0.54;AFR_AF=0.38;AMR_AF=0.64;AN=2;ASN_AF=0.44;AVGPOST=0.9787;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5447;RSQ=0.9641;SNPSOURCE=EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:1.050:-0.48,-0.48,-0.48 +1 248084631 rs28689982 A C 100 PASS AA=a;AC=1;AF=0.60;AFR_AF=0.58;AMR_AF=0.68;AN=2;ASN_AF=0.45;AVGPOST=0.9621;ERATE=0.0075;EUR_AF=0.70;LDAF=0.6064;RSQ=0.9318;SNPSOURCE=LOWCOV,EXOME;THETA=0.0081;VT=SNP GT:DS:GL 0|1:1.100:-0.48,-0.48,-0.48 +1 248084754 rs192581532 G A 100 PASS AA=G;AC=1;AF=0.22;AFR_AF=0.16;AMR_AF=0.17;AN=2;ASN_AF=0.43;AVGPOST=0.9456;ERATE=0.0014;EUR_AF=0.12;LDAF=0.2165;RSQ=0.9016;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:0.700:-0.48,-0.48,-0.48 +1 248084756 rs146023264 G C 100 PASS AA=g;AC=1;AF=0.25;AFR_AF=0.21;AMR_AF=0.22;AN=2;ASN_AF=0.44;AVGPOST=0.9447;ERATE=0.0013;EUR_AF=0.14;LDAF=0.2462;RSQ=0.9053;SNPSOURCE=EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:0.850:-0.48,-0.48,-0.48 +1 248084825 rs61857492 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.34;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=0.9067;ERATE=0.0846;EUR_AF=0.30;LDAF=0.3077;RSQ=0.7855;SNPSOURCE=EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|0:1.000:-1.78,-0.01,-3.42 +1 248084854 rs4584426 A G 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.37;AMR_AF=0.59;AN=2;ASN_AF=0.37;AVGPOST=0.9422;ERATE=0.0258;EUR_AF=0.58;LDAF=0.4810;RSQ=0.9101;SNPSOURCE=EXOME;THETA=0.0035;VT=SNP GT:DS:GL 0|1:1.000:-1.25,-0.03,-5.00 +1 248084909 rs34508376 T G 100 PASS AA=T;AC=1;AF=0.46;AFR_AF=0.13;AMR_AF=0.64;AN=2;ASN_AF=0.37;AVGPOST=0.9822;ERATE=0.0046;EUR_AF=0.66;LDAF=0.4613;RSQ=0.9760;SNPSOURCE=EXOME;THETA=0.0078;VT=SNP GT:DS:GL 0|1:1.000:-0.41,-0.22,-2.09 +1 248084980 rs4362017 G T 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.17;AMR_AF=0.65;AN=2;ASN_AF=0.36;AVGPOST=0.9917;ERATE=0.0006;EUR_AF=0.67;LDAF=0.4740;RSQ=0.9887;SNPSOURCE=EXOME;THETA=0.0053;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.89,-0.06 +1 248085011 rs4595394 C G 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.29;AMR_AF=0.26;AN=2;ASN_AF=0.54;AVGPOST=0.9949;ERATE=0.0015;EUR_AF=0.20;LDAF=0.3153;RSQ=0.9912;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-1.44,-0.02,-5.00 +1 248085108 rs4625315 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.34;AMR_AF=0.67;AN=2;ASN_AF=0.43;AVGPOST=0.9899;ERATE=0.0030;EUR_AF=0.73;LDAF=0.5556;RSQ=0.9848;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248085124 rs4590708 G A 100 PASS AA=G;AC=1;AF=0.31;AFR_AF=0.26;AMR_AF=0.26;AN=2;ASN_AF=0.54;AVGPOST=0.9964;ERATE=0.0003;EUR_AF=0.20;LDAF=0.3134;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0137;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248112763 rs4925790 G A 100 PASS AA=.;AC=2;AF=0.65;AFR_AF=0.23;AMR_AF=0.84;AN=2;ASN_AF=0.73;AVGPOST=0.9707;ERATE=0.0003;EUR_AF=0.77;LDAF=0.6515;RSQ=0.9647;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.15,-0.00 +1 248112771 rs4925791 C T 100 PASS AA=.;AC=2;AF=0.75;AFR_AF=0.24;AMR_AF=0.93;AN=2;ASN_AF=0.83;AVGPOST=0.9878;ERATE=0.0068;EUR_AF=0.92;LDAF=0.7450;RSQ=0.9834;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.32,-0.00 +1 248112809 rs4925583 A G 100 PASS AA=.;AC=2;AF=0.78;AFR_AF=0.28;AMR_AF=0.94;AN=2;ASN_AF=0.86;AVGPOST=0.9957;ERATE=0.0010;EUR_AF=0.96;LDAF=0.7772;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248112836 rs4925792 A G 100 PASS AA=.;AC=2;AF=0.78;AFR_AF=0.30;AMR_AF=0.94;AN=2;ASN_AF=0.85;AVGPOST=0.9976;ERATE=0.0004;EUR_AF=0.95;LDAF=0.7787;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0078;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248112915 rs10888280 A G 100 PASS AA=.;AC=2;AF=0.30;AFR_AF=0.13;AMR_AF=0.36;AN=2;ASN_AF=0.40;AVGPOST=0.9981;ERATE=0.0003;EUR_AF=0.30;LDAF=0.2962;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.34,-0.00 +1 248113026 rs10888281 T A 100 PASS AA=.;AC=2;AF=0.76;AFR_AF=0.29;AMR_AF=0.93;AN=2;ASN_AF=0.83;AVGPOST=0.9932;ERATE=0.0002;EUR_AF=0.94;LDAF=0.7658;RSQ=0.9902;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.29,-0.02 +1 248113040 rs10888282 A G 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.83;AMR_AF=0.97;AN=2;ASN_AF=0.95;AVGPOST=0.9560;ERATE=0.0097;EUR_AF=0.96;LDAF=0.9206;RSQ=0.7812;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.39,-0.02 +1 248113121 rs12030937 C A 100 PASS AA=.;AC=2;AF=0.31;AFR_AF=0.16;AMR_AF=0.38;AN=2;ASN_AF=0.39;AVGPOST=0.9990;ERATE=0.0004;EUR_AF=0.30;LDAF=0.3056;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.68,-0.10 +1 248128929 rs6664332 G A 100 PASS AA=.;AC=2;AF=0.36;AFR_AF=0.27;AMR_AF=0.39;AN=2;ASN_AF=0.44;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.33;LDAF=0.3552;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248129689 rs78182622 G T 100 PASS AA=.;AC=1;AF=0.04;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0375;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248262644 rs78385124 A G 100 PASS AA=A;AC=1;AF=0.10;AFR_AF=0.01;AMR_AF=0.23;AN=2;ASN_AF=0.04;AVGPOST=0.9989;ERATE=0.0010;EUR_AF=0.14;LDAF=0.1004;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248308783 rs140701631 T A 100 PASS AA=t;AC=1;AF=0.01;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0101;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248366792 rs12562957 T C 100 PASS AA=T;AC=1;AF=0.22;AFR_AF=0.18;AMR_AF=0.21;AN=2;ASN_AF=0.35;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.16;LDAF=0.2246;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248402758 rs6666148 C T 100 PASS AA=t;AC=1;AF=0.68;AFR_AF=0.43;AMR_AF=0.70;AN=2;ASN_AF=0.79;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.75;LDAF=0.6792;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248436611 rs10888338 G A 100 PASS AA=-;AC=1;AF=0.63;AFR_AF=0.53;AMR_AF=0.63;AN=2;ASN_AF=0.75;AVGPOST=0.9015;ERATE=0.0412;EUR_AF=0.61;LDAF=0.6128;RSQ=0.8609;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.87,-0.01,-4.40 +1 248436616 rs71538179 A G 100 PASS AA=-;AC=1;AF=0.70;AFR_AF=0.63;AMR_AF=0.67;AN=2;ASN_AF=0.81;AVGPOST=0.9378;ERATE=0.0182;EUR_AF=0.67;LDAF=0.6908;RSQ=0.9129;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-1.30,-0.02,-2.36 +1 248436805 rs28399248 T G 100 PASS AA=-;AC=1;AF=0.76;AFR_AF=0.77;AMR_AF=0.73;AN=2;ASN_AF=0.79;AVGPOST=0.8981;ERATE=0.0261;EUR_AF=0.74;LDAF=0.7394;RSQ=0.7688;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.400:-0.48,-0.48,-0.48 +1 248436857 rs137984104 C T 100 PASS AA=-;AC=1;AF=0.13;AFR_AF=0.04;AMR_AF=0.13;AN=2;ASN_AF=0.24;AVGPOST=0.9639;ERATE=0.0102;EUR_AF=0.10;LDAF=0.1322;RSQ=0.8830;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:0.850:-0.48,-0.48,-0.48 +1 248436972 rs112084843 A G 100 PASS AA=-;AC=1;AF=0.35;AFR_AF=0.40;AMR_AF=0.30;AN=2;ASN_AF=0.40;AVGPOST=0.9539;ERATE=0.0431;EUR_AF=0.31;LDAF=0.3623;RSQ=0.9072;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:0.850:-0.19,-0.46,-2.44 +1 248457979 rs6667171 C A 100 PASS AA=c;AC=1;AF=0.77;AFR_AF=0.74;AMR_AF=0.71;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.74;LDAF=0.7663;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248457993 rs11204625 C G 100 PASS AA=-;AC=1;AF=0.19;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.35;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1937;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248458760 rs12135684 C A 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.17;AMR_AF=0.24;AN=2;ASN_AF=0.35;AVGPOST=0.9946;ERATE=0.0059;EUR_AF=0.20;LDAF=0.2391;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-4.10,-0.00,-5.00 +1 248486895 rs4244184 G T 100 PASS AA=T;AC=1;AF=0.79;AFR_AF=0.84;AMR_AF=0.73;AN=2;ASN_AF=0.86;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7920;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248486913 rs4244185 A G 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.74;AMR_AF=0.72;AN=2;ASN_AF=0.86;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7674;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248487016 rs4451579 C T 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.35;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.19;LDAF=0.1949;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248487338 rs4916130 C A 100 PASS AA=A;AC=1;AF=0.76;AFR_AF=0.78;AMR_AF=0.71;AN=2;ASN_AF=0.83;AVGPOST=0.9785;ERATE=0.0192;EUR_AF=0.71;LDAF=0.7526;RSQ=0.9660;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:0.950:-0.25,-0.36,-4.40 +1 248487638 rs7555310 A G 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.74;AMR_AF=0.72;AN=2;ASN_AF=0.86;AVGPOST=0.9989;ERATE=0.0009;EUR_AF=0.74;LDAF=0.7654;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248487768 rs7555424 A G 100 PASS AA=A;AC=1;AF=0.77;AFR_AF=0.74;AMR_AF=0.72;AN=2;ASN_AF=0.86;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.74;LDAF=0.7666;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248512498 rs28448343 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.12;AMR_AF=0.22;AN=2;ASN_AF=0.41;AVGPOST=0.9999;ERATE=0.0008;EUR_AF=0.21;LDAF=0.2422;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248525071 rs28499298 T C 100 PASS AA=t;AC=1;AF=0.23;AFR_AF=0.21;AMR_AF=0.20;AN=2;ASN_AF=0.37;AVGPOST=0.9972;ERATE=0.0046;EUR_AF=0.16;LDAF=0.2333;RSQ=0.9948;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248525193 rs28655275 C T 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.01;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=0.9992;ERATE=0.0024;EUR_AF=0.18;LDAF=0.2011;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248525285 rs28637620 T C 100 PASS AA=T;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.23;AN=2;ASN_AF=0.38;AVGPOST=0.9904;ERATE=0.0230;EUR_AF=0.16;LDAF=0.2461;RSQ=0.9819;SNPSOURCE=EXOME;THETA=0.0067;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248525647 rs28405645 C A 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.25;AMR_AF=0.23;AN=2;ASN_AF=0.40;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2665;RSQ=0.9986;SNPSOURCE=EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248525650 rs28602650 C T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.25;AMR_AF=0.23;AN=2;ASN_AF=0.41;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2662;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248525657 rs28718027 G A 100 PASS AA=A;AC=1;AF=0.25;AFR_AF=0.23;AMR_AF=0.20;AN=2;ASN_AF=0.39;AVGPOST=0.9953;ERATE=0.0012;EUR_AF=0.17;LDAF=0.2466;RSQ=0.9905;SNPSOURCE=EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248525780 rs28698997 C T 100 PASS AA=C;AC=1;AF=0.28;AFR_AF=0.28;AMR_AF=0.23;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2765;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248550894 rs7418152 T G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.53;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3401;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248550970 rs7417616 A G 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.53;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3399;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248550976 rs6587467 T G 100 PASS AA=G;AC=1;AF=0.73;AFR_AF=0.86;AMR_AF=0.69;AN=2;ASN_AF=0.73;AVGPOST=0.9999;ERATE=0.0007;EUR_AF=0.67;LDAF=0.7313;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248551203 rs6700947 T C 100 PASS AA=t;AC=1;AF=0.32;AFR_AF=0.46;AMR_AF=0.26;AN=2;ASN_AF=0.42;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3228;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248551560 rs954474 C T 100 PASS AA=C;AC=1;AF=0.27;AFR_AF=0.25;AMR_AF=0.24;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.2724;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248551636 rs954475 T G 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.49;AMR_AF=0.26;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3290;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248570440 rs6695780 G A 100 PASS AA=a;AC=1;AF=0.83;AFR_AF=0.86;AMR_AF=0.79;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8253;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248637046 rs148025314 G A 100 PASS AA=g;AC=1;AF=0.29;AFR_AF=0.26;AMR_AF=0.28;AN=2;ASN_AF=0.42;AVGPOST=0.9591;ERATE=0.0007;EUR_AF=0.23;LDAF=0.2907;RSQ=0.9075;SNPSOURCE=EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|0:0.950:-0.48,-0.48,-0.48 +1 248637115 rs139558207 T C 100 PASS AA=t;AC=1;AF=0.36;AFR_AF=0.39;AMR_AF=0.34;AN=2;ASN_AF=0.44;AVGPOST=0.9434;ERATE=0.0050;EUR_AF=0.30;LDAF=0.3603;RSQ=0.8806;SNPSOURCE=EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|0:0.950:-0.21,-0.43,-1.85 +1 248637262 rs1770110 T C 100 PASS AA=t;AC=1;AF=0.23;AFR_AF=0.16;AMR_AF=0.19;AN=2;ASN_AF=0.41;AVGPOST=0.9432;ERATE=0.0194;EUR_AF=0.17;LDAF=0.2355;RSQ=0.8997;SNPSOURCE=EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:0.950:-1.41,-0.02,-5.00 +1 248637362 rs77686526 C T 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.34;AMR_AF=0.32;AN=2;ASN_AF=0.51;AVGPOST=0.9830;ERATE=0.0018;EUR_AF=0.27;LDAF=0.3569;RSQ=0.9725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0100;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.01,-1.91 +1 248637543 rs139993642 C T 100 PASS AA=c;AC=1;AF=0.29;AFR_AF=0.25;AMR_AF=0.26;AN=2;ASN_AF=0.41;AVGPOST=0.9496;ERATE=0.0036;EUR_AF=0.23;LDAF=0.2818;RSQ=0.8817;SNPSOURCE=EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:0.700:-0.28,-0.33,-4.22 +1 248685253 rs9727474 T C 100 PASS AA=N;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9596;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248789454 rs1892441 G C 100 PASS AA=.;AC=2;AF=0.89;AFR_AF=0.56;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9906;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8879;RSQ=0.9754;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248789504 rs1892442 T C 100 PASS AA=.;AC=2;AF=0.96;AFR_AF=0.86;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9948;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9578;RSQ=0.9606;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248790075 rs1892443 A G 100 PASS AA=.;AC=2;AF=0.92;AFR_AF=0.67;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9934;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9152;RSQ=0.9747;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248801592 rs78622116 C T 100 PASS AA=.;AC=1;AF=0.73;AFR_AF=0.50;AMR_AF=0.79;AN=2;ASN_AF=0.79;AVGPOST=0.8055;ERATE=0.0125;EUR_AF=0.80;LDAF=0.6789;RSQ=0.6809;SNPSOURCE=EXOME;THETA=0.0250;VT=SNP GT:DS:GL 0|1:1.300:-0.48,-0.48,-0.48 +1 248801897 rs79303917 G A 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.33;AVGPOST=0.9583;ERATE=0.0014;EUR_AF=0.14;LDAF=0.1841;RSQ=0.8814;SNPSOURCE=EXOME;THETA=0.0151;VT=SNP GT:DS:GL 1|0:1.250:-5.00,-0.44,-0.19 +1 248802469 rs199678335 C T 100 PASS AA=.;AC=2;AF=0.85;AFR_AF=0.64;AMR_AF=0.93;AN=2;ASN_AF=0.93;AVGPOST=0.7636;ERATE=0.0245;EUR_AF=0.89;LDAF=0.7570;RSQ=0.5182;SNPSOURCE=EXOME;THETA=0.0202;VT=SNP GT:DS:GL 1|1:1.700:-2.86,-0.45,-0.19 +1 248813547 rs201161767 G C 100 PASS AA=.;AC=2;AF=0.67;AFR_AF=0.25;AMR_AF=0.83;AN=2;ASN_AF=0.70;AVGPOST=0.9297;ERATE=0.0076;EUR_AF=0.85;LDAF=0.6538;RSQ=0.9146;SNPSOURCE=EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.66,-0.11 +1 248814052 rs28533004 T A 100 PASS AA=.;AC=1;AF=0.57;AFR_AF=0.53;AMR_AF=0.60;AN=2;ASN_AF=0.56;AVGPOST=0.8589;ERATE=0.0389;EUR_AF=0.59;LDAF=0.5551;RSQ=0.6704;SNPSOURCE=EXOME;THETA=0.0118;VT=SNP GT:DS:GL 1|0:0.900:-0.48,-0.48,-0.48 +1 248814080 rs1782242 A C 100 PASS AA=.;AC=2;AF=0.95;AFR_AF=0.82;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9895;ERATE=0.0033;EUR_AF=1.00;LDAF=0.9522;RSQ=0.9109;SNPSOURCE=LOWCOV,EXOME;THETA=0.0120;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.42,-0.02 +1 248814126 rs28418327 G A 100 PASS AA=.;AC=1;AF=0.67;AFR_AF=0.61;AMR_AF=0.60;AN=2;ASN_AF=0.88;AVGPOST=0.9598;ERATE=0.0507;EUR_AF=0.59;LDAF=0.6651;RSQ=0.9038;SNPSOURCE=EXOME;THETA=0.0149;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.40 +1 248844959 rs55871516 T C 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.18;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1335;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248845097 rs2000390 C T 100 PASS AA=.;AC=1;AF=0.78;AFR_AF=0.45;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7761;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248845356 rs41311583 G T 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.17;AMR_AF=0.10;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.12;LDAF=0.1307;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +1 248845411 rs11485825 G A 100 PASS AA=.;AC=1;AF=0.79;AFR_AF=0.52;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7920;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248845458 rs4509608 C T 100 PASS AA=.;AC=1;AF=0.77;AFR_AF=0.42;AMR_AF=0.86;AN=2;ASN_AF=0.87;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.88;LDAF=0.7714;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +1 248845471 rs4575113 T C 100 PASS AA=.;AC=2;AF=0.90;AFR_AF=0.60;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9013;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 248845499 rs4462184 A G 100 PASS AA=.;AC=2;AF=0.93;AFR_AF=0.70;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9260;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +1 249110906 rs4926508 G C 100 PASS AA=G;AC=1;AF=0.48;AFR_AF=0.13;AMR_AF=0.63;AN=2;ASN_AF=0.36;AVGPOST=0.9991;ERATE=0.0005;EUR_AF=0.72;LDAF=0.4753;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0027;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 200860 rs149308410 T C 100 PASS AA=.;AC=2;AF=0.79;AFR_AF=0.94;AMR_AF=0.71;AN=2;ASN_AF=0.78;AVGPOST=0.9997;ERATE=0.0005;EUR_AF=0.73;LDAF=0.7894;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 205373 rs183135182 A G 100 PASS AA=.;AC=2;AF=0.56;AFR_AF=0.25;AMR_AF=0.58;AN=2;ASN_AF=0.67;AVGPOST=0.9984;ERATE=0.0014;EUR_AF=0.67;LDAF=0.5592;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 207362 rs138167631 C T 100 PASS AA=.;AC=2;AF=0.57;AFR_AF=0.35;AMR_AF=0.53;AN=2;ASN_AF=0.75;AVGPOST=0.9969;ERATE=0.0006;EUR_AF=0.59;LDAF=0.5680;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 295069 rs191602319 A G 100 PASS AA=A;AC=2;AF=0.49;AFR_AF=0.68;AMR_AF=0.42;AN=2;ASN_AF=0.48;AVGPOST=0.9842;ERATE=0.0012;EUR_AF=0.41;LDAF=0.4897;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.04,-0.00 +X 295097 rs138337436 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.16;AMR_AF=0.24;AN=2;ASN_AF=0.22;AVGPOST=0.9938;ERATE=0.0005;EUR_AF=0.30;LDAF=0.2387;RSQ=0.9868;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 295132 rs149158170 T C 100 PASS AA=T;AC=2;AF=0.52;AFR_AF=0.81;AMR_AF=0.43;AN=2;ASN_AF=0.48;AVGPOST=0.9824;ERATE=0.0034;EUR_AF=0.41;LDAF=0.5237;RSQ=0.9757;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.21,-0.00 +X 295231 rs148359886 A G 100 PASS AA=A;AC=2;AF=0.53;AFR_AF=0.81;AMR_AF=0.43;AN=2;ASN_AF=0.51;AVGPOST=0.9791;ERATE=0.0026;EUR_AF=0.42;LDAF=0.5315;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:1.950:-3.66,-0.51,-0.16 +X 295243 rs144421032 G A 100 PASS AA=G;AC=1;AF=0.0046;AFR_AF=0.02;AMR_AF=0.0028;AN=2;AVGPOST=0.9985;ERATE=0.0005;LDAF=0.0051;RSQ=0.8775;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|0:0.750:-3.34,-0.01,-1.94 +X 299360 rs150477629 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.11;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.31;LDAF=0.2312;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 299362 rs138410054 A G 100 PASS AA=a;AC=2;AF=0.87;AFR_AF=0.98;AMR_AF=0.79;AN=2;ASN_AF=0.90;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.81;LDAF=0.8693;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 299481 rs141523608 C A 100 PASS AA=C;AC=2;AF=0.74;AFR_AF=0.62;AMR_AF=0.69;AN=2;ASN_AF=0.85;AVGPOST=0.9932;ERATE=0.0056;EUR_AF=0.75;LDAF=0.7351;RSQ=0.9884;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 299501 rs145396935 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.16;AMR_AF=0.37;AN=2;ASN_AF=0.41;AVGPOST=0.9990;ERATE=0.0015;EUR_AF=0.41;LDAF=0.3492;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 299591 rs137911861 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.92;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.81;LDAF=0.8551;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 299635 rs142572399 C T 100 PASS AA=C;AC=1;AF=0.24;AFR_AF=0.15;AMR_AF=0.24;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0019;EUR_AF=0.31;LDAF=0.2390;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 301454 . G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.29;AMR_AF=0.19;AN=2;ASN_AF=0.34;AVGPOST=0.9857;ERATE=0.0045;EUR_AF=0.28;LDAF=0.2819;RSQ=0.9692;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:0.600:-0.08,-0.76,-5.00 +X 301992 rs150108271 G A 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.35;AMR_AF=0.27;AN=2;ASN_AF=0.39;AVGPOST=0.9885;ERATE=0.0030;EUR_AF=0.32;LDAF=0.3337;RSQ=0.9809;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 302139 rs138608845 G C 100 PASS AA=C;AC=2;AF=0.79;AFR_AF=0.83;AMR_AF=0.72;AN=2;ASN_AF=0.84;AVGPOST=0.9959;ERATE=0.0010;EUR_AF=0.77;LDAF=0.7930;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 307411 rs148261498 G A 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.20;AMR_AF=0.38;AN=2;ASN_AF=0.44;AVGPOST=0.9697;ERATE=0.0035;EUR_AF=0.38;LDAF=0.3590;RSQ=0.9508;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-1.84,-0.01,-5.00 +X 307920 . G C 100 PASS AA=g;AC=2;AF=0.67;AFR_AF=0.49;AMR_AF=0.61;AN=2;ASN_AF=0.78;AVGPOST=0.9263;ERATE=0.0395;EUR_AF=0.72;LDAF=0.6512;RSQ=0.8911;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.04,-0.00 +X 322161 rs139099006 A G 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.67;AMR_AF=0.62;AN=2;ASN_AF=0.55;AVGPOST=0.9986;ERATE=0.0005;EUR_AF=0.62;LDAF=0.6155;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 322257 rs144954420 G A 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.16;AMR_AF=0.28;AN=2;ASN_AF=0.22;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.35;LDAF=0.2621;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 591926 rs140970936 T G 100 PASS AA=G;AC=2;AF=0.96;AFR_AF=0.95;AMR_AF=0.97;AN=2;ASN_AF=0.94;AVGPOST=0.9979;ERATE=0.0006;EUR_AF=0.98;LDAF=0.9620;RSQ=0.9772;SNPSOURCE=LOWCOV,EXOME;THETA=0.0063;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1409420 rs144750623 G T 100 PASS AA=.;AC=1;AF=0.13;AFR_AF=0.20;AMR_AF=0.13;AN=2;ASN_AF=0.11;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.09;LDAF=0.1283;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 1422868 rs146020675 G A 100 PASS AA=.;AC=2;AF=0.34;AFR_AF=0.29;AMR_AF=0.32;AN=2;ASN_AF=0.31;AVGPOST=0.9987;ERATE=0.0004;EUR_AF=0.40;LDAF=0.3401;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1422943 rs139978009 T C 100 PASS AA=.;AC=2;AF=0.64;AFR_AF=0.69;AMR_AF=0.60;AN=2;ASN_AF=0.59;AVGPOST=0.9970;ERATE=0.0011;EUR_AF=0.67;LDAF=0.6397;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1460617 rs185999304 G C 100 PASS AA=.;AC=2;AF=0.89;AFR_AF=0.81;AMR_AF=0.92;AN=2;ASN_AF=0.82;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.99;LDAF=0.8935;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1460740 rs149479304 A G 100 PASS AA=.;AC=1;AF=0.77;AFR_AF=0.48;AMR_AF=0.86;AN=2;ASN_AF=0.76;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.92;LDAF=0.7724;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 1464184 rs150072215 G T 100 PASS AA=.;AC=2;AF=0.59;AFR_AF=0.79;AMR_AF=0.57;AN=2;ASN_AF=0.48;AVGPOST=0.9978;ERATE=0.0042;EUR_AF=0.55;LDAF=0.5881;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0067;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1467290 rs143694639 G C 100 PASS AA=.;AC=1;AF=0.40;AFR_AF=0.19;AMR_AF=0.38;AN=2;ASN_AF=0.37;AVGPOST=0.9970;ERATE=0.0120;EUR_AF=0.56;LDAF=0.3975;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0137;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 1471138 rs145821690 G T 100 PASS AA=.;AC=2;AF=0.69;AFR_AF=0.92;AMR_AF=0.73;AN=2;ASN_AF=0.39;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.76;LDAF=0.6942;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1499878 rs146536506 T G 100 PASS AA=.;AC=1;AF=0.59;AFR_AF=0.77;AMR_AF=0.63;AN=2;ASN_AF=0.44;AVGPOST=0.9995;ERATE=0.0009;EUR_AF=0.56;LDAF=0.5884;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 1506318 rs182857272 C G 100 PASS AA=.;AC=1;AF=0.60;AFR_AF=0.78;AMR_AF=0.64;AN=2;ASN_AF=0.47;AVGPOST=0.9978;ERATE=0.0010;EUR_AF=0.57;LDAF=0.6026;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 1508324 rs146688502 G A 100 PASS AA=.;AC=1;AF=0.28;AFR_AF=0.49;AMR_AF=0.32;AN=2;ASN_AF=0.12;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.26;LDAF=0.2852;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 1531765 rs148250762 C G 100 PASS AA=N;AC=2;AF=0.42;AFR_AF=0.40;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4227;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1531770 rs141453748 T C 100 PASS AA=N;AC=2;AF=0.42;AFR_AF=0.40;AMR_AF=0.43;AN=2;ASN_AF=0.41;AVGPOST=0.9984;ERATE=0.0003;EUR_AF=0.44;LDAF=0.4227;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1537002 rs192663340 C G 100 PASS AA=c;AC=2;AF=0.61;AFR_AF=0.33;AMR_AF=0.69;AN=2;ASN_AF=0.75;AVGPOST=0.9790;ERATE=0.0097;EUR_AF=0.65;LDAF=0.6087;RSQ=0.9708;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1537881 rs151271783 C T 100 PASS AA=c;AC=1;AF=0.26;AFR_AF=0.28;AMR_AF=0.33;AN=2;ASN_AF=0.23;AVGPOST=0.9716;ERATE=0.0063;EUR_AF=0.23;LDAF=0.2625;RSQ=0.9458;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 1544482 rs140071135 C T 100 PASS AA=c;AC=1;AF=0.01;AFR_AF=0.0020;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0066;RSQ=0.9733;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 1546792 rs147098886 G A 100 PASS AA=g;AC=2;AF=0.67;AFR_AF=0.39;AMR_AF=0.73;AN=2;ASN_AF=0.82;AVGPOST=0.9952;ERATE=0.0024;EUR_AF=0.72;LDAF=0.6728;RSQ=0.9916;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1546876 rs148858066 A G 100 PASS AA=g;AC=2;AF=0.69;AFR_AF=0.45;AMR_AF=0.73;AN=2;ASN_AF=0.83;AVGPOST=0.9905;ERATE=0.0036;EUR_AF=0.71;LDAF=0.6861;RSQ=0.9835;SNPSOURCE=LOWCOV,EXOME;THETA=0.0021;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1553907 rs142647986 G A 100 PASS AA=N;AC=1;AF=0.19;AFR_AF=0.26;AMR_AF=0.18;AN=2;ASN_AF=0.24;AVGPOST=0.9944;ERATE=0.0020;EUR_AF=0.12;LDAF=0.1931;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 1554649 rs140898431 T C 100 PASS AA=c;AC=1;AF=0.40;AFR_AF=0.51;AMR_AF=0.34;AN=2;ASN_AF=0.41;AVGPOST=0.9931;ERATE=0.0004;EUR_AF=0.35;LDAF=0.3982;RSQ=0.9895;SNPSOURCE=LOWCOV,EXOME;THETA=0.0048;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 1554655 rs150136641 T C 100 PASS AA=c;AC=1;AF=0.39;AFR_AF=0.48;AMR_AF=0.33;AN=2;ASN_AF=0.40;AVGPOST=0.9942;ERATE=0.0008;EUR_AF=0.35;LDAF=0.3874;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 1585500 rs144490561 T C 100 PASS AA=c;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9973;ERATE=0.0006;EUR_AF=1.00;LDAF=0.9909;RSQ=0.8863;SNPSOURCE=LOWCOV,EXOME;THETA=0.0100;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1713021 rs144582736 C T 100 PASS AA=c;AC=2;AF=0.57;AFR_AF=0.58;AMR_AF=0.52;AN=2;ASN_AF=0.55;AVGPOST=0.9985;ERATE=0.0005;EUR_AF=0.58;LDAF=0.5651;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 1718360 rs146889818 G A 100 PASS AA=g;AC=1;AF=0.51;AFR_AF=0.36;AMR_AF=0.51;AN=2;ASN_AF=0.53;AVGPOST=0.9663;ERATE=0.0027;EUR_AF=0.58;LDAF=0.5076;RSQ=0.9508;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-0.17,-0.50,-2.88 +X 1719897 rs144881287 C G 100 PASS AA=c;AC=1;AF=0.54;AFR_AF=0.41;AMR_AF=0.57;AN=2;ASN_AF=0.53;AVGPOST=0.9778;ERATE=0.0005;EUR_AF=0.61;LDAF=0.5400;RSQ=0.9670;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 2139200 rs185574506 T C 100 PASS AA=c;AC=2;AF=0.90;AFR_AF=0.99;AMR_AF=0.78;AN=2;ASN_AF=0.99;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.83;LDAF=0.9004;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 2161129 rs143173259 C G 100 PASS AA=g;AC=2;AF=0.57;AFR_AF=0.79;AMR_AF=0.65;AN=2;ASN_AF=0.23;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.65;LDAF=0.5723;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 2209672 rs184008678 C G 100 PASS AA=C;AC=2;AF=0.30;AFR_AF=0.20;AMR_AF=0.33;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3035;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 2326782 rs141006490 G C 100 PASS AA=g;AC=1;AF=0.28;AFR_AF=0.57;AMR_AF=0.19;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0004;EUR_AF=0.19;LDAF=0.2792;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 2688542 rs147341525 T C 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.55;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.45;LDAF=0.4925;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 2700202 rs5939320 A G 100 PASS AA=A;AC=1;AF=0.39;AFR_AF=0.46;AMR_AF=0.28;AN=2;ASN_AF=0.52;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.29;LDAF=0.3904;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 2715425 rs112841345 A G 100 PASS AA=G;AC=2;AF=0.61;AFR_AF=0.62;AMR_AF=0.78;AN=2;ASN_AF=0.48;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.63;LDAF=0.6096;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 2748253 rs6642032 G C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.77;AMR_AF=0.90;AN=2;ASN_AF=0.99;AVGPOST=0.9988;ERATE=0.0003;EUR_AF=0.99;LDAF=0.9289;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0053;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.99,-0.00 +X 2773007 rs146920147 C T 100 PASS AA=C;AC=1;AF=0.0036;AMR_AF=0.01;AN=2;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.01;LDAF=0.0029;RSQ=0.8918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 2774700 rs5939133 T G 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.48;AMR_AF=0.40;AN=2;ASN_AF=0.27;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.29;LDAF=0.3409;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 2777985 rs2306734 C T 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.31;AMR_AF=0.62;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.71;LDAF=0.6335;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 2779570 rs2306735 A G 100 PASS AA=N;AC=1;AF=0.63;AFR_AF=0.31;AMR_AF=0.61;AN=2;ASN_AF=0.82;AVGPOST=0.9994;ERATE=0.0008;EUR_AF=0.70;LDAF=0.6302;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 2825403 rs2228431 A G 100 PASS AA=g;AC=1;AF=0.23;AFR_AF=0.31;AMR_AF=0.14;AN=2;ASN_AF=0.46;AVGPOST=0.9992;ERATE=0.0004;EUR_AF=0.05;LDAF=0.2342;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 2832742 rs211648 G C 100 PASS AA=C;AC=1;AF=0.76;AFR_AF=0.87;AMR_AF=0.75;AN=2;ASN_AF=0.91;AVGPOST=0.9904;ERATE=0.0004;EUR_AF=0.60;LDAF=0.7749;RSQ=0.9676;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 2836037 rs211653 G C 100 PASS AA=g;AC=1;AF=0.41;AFR_AF=0.35;AMR_AF=0.51;AN=2;ASN_AF=0.32;AVGPOST=0.9661;ERATE=0.0011;EUR_AF=0.47;LDAF=0.3873;RSQ=0.9150;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 0|1:1.000:-4.70,-0.00,-5.00 +X 2852915 rs11055 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.0027;AMR_AF=0.03;AN=2;AVGPOST=0.9952;ERATE=0.0003;EUR_AF=0.08;LDAF=0.0348;RSQ=0.9348;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-3.30,-0.00,-5.00 +X 2856155 rs35143646 C T 100 PASS AA=c;AC=2;AF=0.57;AFR_AF=0.08;AMR_AF=0.54;AN=2;ASN_AF=0.89;AVGPOST=0.9949;ERATE=0.0003;EUR_AF=0.68;LDAF=0.5771;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.45,-0.00 +X 2942109 rs5939407 T C 100 PASS AA=T;AC=2;AF=0.73;AFR_AF=0.58;AMR_AF=0.72;AN=2;ASN_AF=0.97;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.66;LDAF=0.7336;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 2951434 rs5939155 C G 100 PASS AA=N;AC=2;AF=0.75;AFR_AF=0.62;AMR_AF=0.73;AN=2;ASN_AF=0.97;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.68;LDAF=0.7542;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3002687 rs5983003 A G 100 PASS AA=N;AC=1;AF=0.77;AFR_AF=0.80;AMR_AF=0.74;AN=2;ASN_AF=0.92;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.65;LDAF=0.7702;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 3019114 rs11798999 G A 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.14;AMR_AF=0.16;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 3021798 rs1869561 T C 100 PASS AA=T;AC=1;AF=0.12;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.07;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1219;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 3028260 rs17051478 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.24;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1010;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 3028289 rs5983011 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.24;AMR_AF=0.13;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.1010;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 3030181 rs7053230 G A 100 PASS AA=G;AC=1;AF=0.06;AFR_AF=0.09;AMR_AF=0.10;AN=2;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0608;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0098;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 3030403 rs1052638 C T 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.05;AMR_AF=0.08;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0646;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0051;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 3030426 rs10522044 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.10;AN=2;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.07;LDAF=0.0420;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0035;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 3228891 rs1635235 A G 100 PASS AA=A;AC=2;AF=0.61;AFR_AF=0.45;AMR_AF=0.60;AN=2;ASN_AF=0.74;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.62;LDAF=0.6058;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.47,-0.01 +X 3235724 rs1635242 C T 100 PASS AA=c;AC=2;AF=0.70;AFR_AF=0.71;AMR_AF=0.64;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.68;LDAF=0.6961;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3238069 rs143725042 G A 100 PASS AA=G;AC=1;AF=0.0018;AMR_AF=0.0036;AN=2;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.0034;LDAF=0.0016;RSQ=0.7703;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 3238167 rs1635245 T G 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.42;AMR_AF=0.48;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4862;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3238733 rs1974522 G A 100 PASS AA=g;AC=2;AF=0.45;AFR_AF=0.27;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4506;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3239545 rs1726199 C T 100 PASS AA=t;AC=2;AF=0.72;AFR_AF=0.81;AMR_AF=0.66;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7217;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.85,-0.00 +X 3240343 rs1635246 G A 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.60;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.5306;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3241050 rs1635247 G A 100 PASS AA=g;AC=2;AF=0.53;AFR_AF=0.60;AMR_AF=0.49;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.60;LDAF=0.5315;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3241256 rs5983119 T C 100 PASS AA=c;AC=2;AF=0.74;AFR_AF=0.90;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7426;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3241284 rs1635248 A G 100 PASS AA=a;AC=2;AF=0.48;AFR_AF=0.40;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4823;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3241317 rs1635249 T C 100 PASS AA=N;AC=2;AF=0.74;AFR_AF=0.90;AMR_AF=0.67;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.7431;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3241791 rs1635250 G A 100 PASS AA=a;AC=2;AF=0.48;AFR_AF=0.40;AMR_AF=0.47;AN=2;ASN_AF=0.40;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4813;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3530194 rs2287236 G T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.72;AMR_AF=0.41;AN=2;ASN_AF=0.21;AVGPOST=0.9971;ERATE=0.0010;EUR_AF=0.58;LDAF=0.4928;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-2.35 +X 3592725 rs10871864 G A 100 PASS AA=G;AC=2;AF=0.48;AFR_AF=0.33;AMR_AF=0.65;AN=2;ASN_AF=0.36;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.58;LDAF=0.4785;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3592847 rs7880937 C T 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9518;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 3631167 rs3752362 A G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.92;AMR_AF=0.64;AN=2;ASN_AF=0.92;AVGPOST=0.9865;ERATE=0.0003;EUR_AF=0.32;LDAF=0.6588;RSQ=0.9805;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-3.59,-0.00,-5.00 +X 8138080 rs1058239 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.97;AMR_AF=0.92;AN=2;ASN_AF=0.97;AVGPOST=0.9993;ERATE=0.0003;EUR_AF=0.82;LDAF=0.9080;RSQ=0.9953;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 8138160 rs1058238 T C 100 PASS AA=C;AC=2;AF=0.76;AFR_AF=0.75;AMR_AF=0.82;AN=2;ASN_AF=0.86;AVGPOST=0.9777;ERATE=0.0014;EUR_AF=0.67;LDAF=0.7631;RSQ=0.9202;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.38,-0.00 +X 8138165 rs1058237 C G 100 PASS AA=G;AC=2;AF=0.65;AFR_AF=0.59;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9879;ERATE=0.0003;EUR_AF=0.57;LDAF=0.6577;RSQ=0.9788;SNPSOURCE=LOWCOV,EXOME;THETA=0.0001;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +X 8138170 rs75657421 C G 100 PASS AA=G;AC=2;AF=0.63;AFR_AF=0.53;AMR_AF=0.71;AN=2;ASN_AF=0.77;AVGPOST=0.9880;ERATE=0.0006;EUR_AF=0.56;LDAF=0.6405;RSQ=0.9799;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.37,-0.00 +X 8138171 rs78723459 T C 100 PASS AA=T;AC=2;AF=0.64;AFR_AF=0.53;AMR_AF=0.72;AN=2;ASN_AF=0.77;AVGPOST=0.9893;ERATE=0.0002;EUR_AF=0.57;LDAF=0.6424;RSQ=0.9821;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.12,-0.00 +X 8138284 rs41309545 G C 100 PASS AA=C;AC=2;AF=0.68;AFR_AF=0.59;AMR_AF=0.77;AN=2;ASN_AF=0.78;AVGPOST=0.9543;ERATE=0.0012;EUR_AF=0.61;LDAF=0.6921;RSQ=0.9120;SNPSOURCE=EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.49,-0.01 +X 8138425 rs200509803 T C 100 PASS AA=T;AC=1;AF=0.41;AFR_AF=0.29;AMR_AF=0.45;AN=2;ASN_AF=0.64;AVGPOST=0.9258;ERATE=0.0007;EUR_AF=0.31;LDAF=0.4252;RSQ=0.8802;SNPSOURCE=EXOME;THETA=0.0120;VT=SNP GT:DS:GL 1|0:0.800:-0.48,-0.48,-0.48 +X 9659766 rs2301675 G A 100 PASS AA=a;AC=1;AF=0.40;AFR_AF=0.51;AMR_AF=0.48;AN=2;ASN_AF=0.20;AVGPOST=0.9990;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3912;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 9661165 rs3747430 G T 100 PASS AA=T;AC=1;AF=0.43;AFR_AF=0.63;AMR_AF=0.50;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4175;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 9665368 rs2239411 C A 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.20;AMR_AF=0.43;AN=2;ASN_AF=0.20;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.43;LDAF=0.3144;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 9859098 rs6640543 A G 100 PASS AA=A;AC=2;AF=0.89;AFR_AF=0.67;AMR_AF=0.91;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.93;LDAF=0.8894;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.54,-0.00 +X 9859197 rs6640544 A G 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.49;AMR_AF=0.89;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.93;LDAF=0.8473;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.01,-0.00 +X 9863426 rs61738461 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.0036;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0068;RSQ=0.9347;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 9914667 rs2073941 A G 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.64;AMR_AF=0.38;AN=2;ASN_AF=0.65;AVGPOST=0.9997;ERATE=0.0012;EUR_AF=0.15;LDAF=0.4279;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 9914947 rs2073942 G C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.81;AMR_AF=0.43;AN=2;ASN_AF=0.64;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.23;LDAF=0.5015;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-1.70,-0.01,-5.00 +X 10062163 rs5934747 G C 100 PASS AA=C;AC=1;AF=0.25;AFR_AF=0.39;AMR_AF=0.39;AN=2;ASN_AF=0.03;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.2542;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 10085674 rs6530368 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.94;AN=2;ASN_AF=1.00;AVGPOST=0.9880;ERATE=0.0005;EUR_AF=0.87;LDAF=0.9403;RSQ=0.9295;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.28,-0.02 +X 11786839 rs2525868 T C 100 PASS AA=C;AC=1;AF=0.91;AFR_AF=0.99;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.80;LDAF=0.9114;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 12628036 rs2304605 A C 100 PASS AA=C;AC=1;AF=0.20;AFR_AF=0.32;AMR_AF=0.23;AN=2;ASN_AF=0.27;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.05;LDAF=0.1974;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 12628049 rs2304604 T C 100 PASS AA=C;AC=2;AF=0.59;AFR_AF=0.90;AMR_AF=0.53;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5864;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 12633034 rs6654760 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.88;AMR_AF=0.58;AN=2;ASN_AF=0.42;AVGPOST=0.9988;ERATE=0.0006;EUR_AF=0.57;LDAF=0.6023;RSQ=0.9966;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 12722616 rs4469660 C G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9947;RSQ=0.9741;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 12809661 rs1731469 G A 100 PASS AA=g;AC=2;AF=0.62;AFR_AF=0.35;AMR_AF=0.61;AN=2;ASN_AF=0.82;AVGPOST=0.9981;ERATE=0.0002;EUR_AF=0.64;LDAF=0.6145;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.19,-0.00 +X 12838934 rs917580 A G 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.41;AMR_AF=0.59;AN=2;ASN_AF=0.44;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.61;LDAF=0.5326;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0041;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 12906030 rs864058 G A 100 PASS AA=G;AC=1;AF=0.10;AFR_AF=0.23;AMR_AF=0.09;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.08;LDAF=0.1040;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 12924826 rs3764880 A G 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.31;AMR_AF=0.42;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.27;LDAF=0.4452;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 12937513 rs2159377 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.22;AMR_AF=0.30;AN=2;ASN_AF=0.74;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.17;LDAF=0.3567;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 12937804 rs5744080 C T 100 PASS AA=c;AC=1;AF=0.63;AFR_AF=0.83;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0010;EUR_AF=0.38;LDAF=0.6388;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 12939112 rs2407992 G C 100 PASS AA=C;AC=1;AF=0.66;AFR_AF=0.94;AMR_AF=0.67;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.39;LDAF=0.6705;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 12939412 rs3747414 C A 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.41;AMR_AF=0.60;AN=2;ASN_AF=0.79;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=0.32;LDAF=0.5152;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 12939928 rs2109135 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 13056654 rs4830483 T C 100 PASS AA=T;AC=1;AF=0.50;AFR_AF=0.23;AMR_AF=0.68;AN=2;ASN_AF=0.68;AVGPOST=0.9989;ERATE=0.0011;EUR_AF=0.47;LDAF=0.5006;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 13337059 rs4830842 C T 100 PASS AA=T;AC=2;AF=0.62;AFR_AF=0.83;AMR_AF=0.66;AN=2;ASN_AF=0.83;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.32;LDAF=0.6310;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 13626403 rs2370236 T C 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.46;AMR_AF=0.13;AN=2;ASN_AF=0.18;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.04;LDAF=0.1899;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 13637306 rs139523577 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0146;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 13680580 rs141411768 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.04;AN=2;ASN_AF=0.02;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0138;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 13681115 rs2361159 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.42;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5375;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 13681638 rs5935649 C T 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.42;AMR_AF=0.58;AN=2;ASN_AF=0.64;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5389;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 13681679 rs5935650 G T 100 PASS AA=T;AC=2;AF=0.57;AFR_AF=0.50;AMR_AF=0.64;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5736;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.27,-0.00 +X 13771576 rs3815049 A G 100 PASS AA=.;AC=2;AF=0.34;AFR_AF=0.25;AMR_AF=0.52;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.24;LDAF=0.3483;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 13803960 rs5978663 C T 100 PASS AA=T;AC=2;AF=0.59;AFR_AF=0.58;AMR_AF=0.72;AN=2;ASN_AF=0.56;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.55;LDAF=0.5928;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 14868806 rs2905223 A G 100 PASS AA=a;AC=1;AF=0.45;AFR_AF=0.45;AMR_AF=0.50;AN=2;ASN_AF=0.18;AVGPOST=0.9980;ERATE=0.0024;EUR_AF=0.63;LDAF=0.4571;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 15408419 rs2317326 T C 100 PASS AA=C;AC=2;AF=0.56;AFR_AF=0.60;AMR_AF=0.57;AN=2;ASN_AF=0.54;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.54;LDAF=0.5592;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 15415583 rs3829990 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.31;AMR_AF=0.47;AN=2;ASN_AF=0.46;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4785;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 15610348 rs2285666 C T 100 PASS 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AA=G;AC=2;AF=0.38;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 15817963 rs5980192 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.97;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.73;LDAF=0.8743;RSQ=0.9959;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 15838366 rs2301724 C T 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.54;AMR_AF=0.55;AN=2;ASN_AF=0.61;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.51;LDAF=0.5485;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 16709626 rs5980322 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.92;AMR_AF=0.56;AN=2;ASN_AF=0.43;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.42;LDAF=0.5502;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 16762002 rs4830562 A G 100 PASS AA=G;AC=2;AF=0.86;AFR_AF=0.86;AMR_AF=0.82;AN=2;ASN_AF=0.94;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.83;LDAF=0.8617;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 16859628 rs5924530 G A 100 PASS AA=A;AC=2;AF=0.66;AFR_AF=0.83;AMR_AF=0.64;AN=2;ASN_AF=0.89;AVGPOST=0.9984;ERATE=0.0029;EUR_AF=0.39;LDAF=0.6604;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 16876980 rs4828536 G A 100 PASS AA=G;AC=2;AF=0.60;AFR_AF=0.51;AMR_AF=0.63;AN=2;ASN_AF=0.89;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.41;LDAF=0.5960;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 17745057 rs149244552 A T 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.05;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0138;RSQ=0.9889;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 17746244 rs3747295 T C 100 PASS AA=C;AC=2;AF=0.37;AFR_AF=0.87;AMR_AF=0.31;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.03;LDAF=0.3812;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 17767602 rs142861368 C T 100 PASS AA=C;AC=1;AF=0.0042;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0041;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 17819377 rs6527818 T C 100 PASS AA=c;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9995;RSQ=0.7933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 19041592 rs5909263 C T 100 PASS AA=T;AC=1;AF=0.66;AFR_AF=0.63;AMR_AF=0.60;AN=2;ASN_AF=0.68;AVGPOST=0.9974;ERATE=0.0015;EUR_AF=0.70;LDAF=0.6679;RSQ=0.9926;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 21508666 rs77732468 A G 100 PASS AA=A;AC=2;AF=0.06;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.0034;LDAF=0.0576;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 22065121 rs178720 C T 100 PASS AA=C;AC=2;AF=0.18;AFR_AF=0.11;AMR_AF=0.26;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1822;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 22291606 rs5951426 C A 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.75;AMR_AF=0.34;AN=2;ASN_AF=0.45;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.11;LDAF=0.3809;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 22291732 rs6629461 C T 100 PASS AA=T;AC=1;AF=0.27;AFR_AF=0.29;AMR_AF=0.30;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0006;EUR_AF=0.11;LDAF=0.2724;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23398214 rs5926304 T C 100 PASS AA=C;AC=1;AF=0.65;AFR_AF=0.89;AMR_AF=0.59;AN=2;ASN_AF=0.58;AVGPOST=0.9987;ERATE=0.0009;EUR_AF=0.59;LDAF=0.6526;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0057;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23685964 rs496067 T C 100 PASS AA=c;AC=1;AF=0.67;AFR_AF=0.67;AMR_AF=0.66;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6613;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23689636 rs513572 A T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.47;AMR_AF=0.55;AN=2;ASN_AF=0.67;AVGPOST=0.9862;ERATE=0.0166;EUR_AF=0.47;LDAF=0.5322;RSQ=0.9652;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23689637 rs513573 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.46;AMR_AF=0.55;AN=2;ASN_AF=0.67;AVGPOST=0.9883;ERATE=0.0222;EUR_AF=0.46;LDAF=0.5253;RSQ=0.9713;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23700473 rs552105 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.65;AMR_AF=0.66;AN=2;ASN_AF=0.78;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.59;LDAF=0.6563;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23700693 rs795489 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.31;AMR_AF=0.50;AN=2;ASN_AF=0.55;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.45;LDAF=0.4484;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.74 +X 23858452 rs8680 G A 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.90;AMR_AF=0.42;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.35;LDAF=0.5603;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23886691 rs6526354 G C 100 PASS AA=C;AC=1;AF=0.52;AFR_AF=0.71;AMR_AF=0.39;AN=2;ASN_AF=0.65;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.36;LDAF=0.5179;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23899112 rs112978835 C T 100 PASS AA=c;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.16;AN=2;ASN_AF=0.50;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2075;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 23925834 rs5970618 A T 100 PASS AA=T;AC=1;AF=0.30;AFR_AF=0.29;AMR_AF=0.25;AN=2;ASN_AF=0.57;AVGPOST=0.9966;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2981;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.11,-0.00,-3.62 +X 23928489 rs2707164 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.23;AMR_AF=0.58;AN=2;ASN_AF=0.35;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.65;LDAF=0.4644;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 24007151 rs5925972 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.02;AMR_AF=0.22;AN=2;ASN_AF=0.52;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.18;LDAF=0.2392;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 24073761 rs36018672 C T 100 PASS AA=C;AC=2;AF=0.48;AFR_AF=0.11;AMR_AF=0.62;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.69;LDAF=0.4776;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 24751958 rs75310488 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 26157220 rs5944317 C T 100 PASS AA=T;AC=2;AF=0.68;AFR_AF=0.82;AMR_AF=0.68;AN=2;ASN_AF=0.91;AVGPOST=0.9914;ERATE=0.0063;EUR_AF=0.42;LDAF=0.6876;RSQ=0.9903;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 26157792 rs5944318 C T 100 PASS AA=T;AC=2;AF=0.69;AFR_AF=0.83;AMR_AF=0.69;AN=2;ASN_AF=0.92;AVGPOST=0.9999;ERATE=0.0001;EUR_AF=0.43;LDAF=0.6970;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 30236658 rs6526962 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.58;AMR_AF=0.37;AN=2;ASN_AF=0.05;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3299;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 30236878 rs2529541 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.90;AMR_AF=0.91;AN=2;ASN_AF=0.69;AVGPOST=0.9847;ERATE=0.0388;EUR_AF=0.87;LDAF=0.8524;RSQ=0.9437;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.91,-0.01 +X 30236913 rs5973792 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.23;AMR_AF=0.20;AN=2;ASN_AF=0.04;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=0.25;LDAF=0.1865;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:0.950:-0.00,-1.99,-5.00 +X 30237003 rs2074793 C T 100 PASS AA=T;AC=1;AF=0.32;AFR_AF=0.56;AMR_AF=0.37;AN=2;ASN_AF=0.05;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.35;LDAF=0.3248;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 30254361 rs2071308 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4703;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 30254376 rs2071309 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.90;AMR_AF=0.89;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8145;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 30254530 rs2071310 A G 100 PASS AA=A;AC=1;AF=0.47;AFR_AF=0.32;AMR_AF=0.52;AN=2;ASN_AF=0.53;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4698;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 30261002 rs2071311 A G 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.90;AMR_AF=0.89;AN=2;ASN_AF=0.57;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8144;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 30261158 rs2856733 G C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.90;AMR_AF=0.89;AN=2;ASN_AF=0.57;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8144;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 30326983 rs2269345 C T 100 PASS AA=C;AC=2;AF=0.41;AFR_AF=0.45;AMR_AF=0.37;AN=2;ASN_AF=0.73;AVGPOST=0.9938;ERATE=0.0003;EUR_AF=0.17;LDAF=0.4146;RSQ=0.9925;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.97,-0.05 +X 30577846 rs887369 A C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.92;AMR_AF=0.90;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.8779;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 30715827 rs2035432 C T 100 PASS AA=T;AC=1;AF=0.77;AFR_AF=0.79;AMR_AF=0.72;AN=2;ASN_AF=0.78;AVGPOST=0.9999;ERATE=0.0005;EUR_AF=0.77;LDAF=0.7682;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 30872602 rs5927629 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 31089930 rs438870 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.48;AMR_AF=0.13;AN=2;ASN_AF=0.29;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2620;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0069;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 31224684 rs2293668 A G 100 PASS AA=G;AC=2;AF=0.82;AFR_AF=0.69;AMR_AF=0.92;AN=2;ASN_AF=0.79;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.89;LDAF=0.8280;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 31496350 rs1800280 C T 100 PASS AA=T;AC=2;AF=0.94;AFR_AF=1.00;AMR_AF=0.84;AN=2;ASN_AF=0.95;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9350;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 31893307 rs1800275 T G 100 PASS AA=T;AC=1;AF=0.20;AFR_AF=0.16;AMR_AF=0.39;AN=2;ASN_AF=0.11;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.21;LDAF=0.1988;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 32380996 rs1801187 C T 100 PASS AA=C;AC=2;AF=0.45;AFR_AF=0.05;AMR_AF=0.61;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0005;EUR_AF=0.47;LDAF=0.4456;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 32503194 rs228406 T C 100 PASS AA=C;AC=2;AF=0.73;AFR_AF=0.63;AMR_AF=0.75;AN=2;ASN_AF=0.86;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.69;LDAF=0.7265;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 32563263 rs228373 A G 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.46;AMR_AF=0.39;AN=2;ASN_AF=0.54;AVGPOST=0.9989;ERATE=0.0008;EUR_AF=0.25;LDAF=0.3995;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 32563488 rs115571 A C 100 PASS AA=C;AC=2;AF=0.78;AFR_AF=0.84;AMR_AF=0.79;AN=2;ASN_AF=0.94;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.62;LDAF=0.7837;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 34962909 rs6632131 A C 100 PASS AA=A;AC=2;AF=0.45;AFR_AF=0.42;AMR_AF=0.43;AN=2;ASN_AF=0.73;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.26;LDAF=0.4484;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 37518734 rs35042954 G A 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.0036;AN=2;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.02;LDAF=0.0050;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 37518806 rs12009345 C T 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.69;AMR_AF=0.20;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2559;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 37527659 rs28503960 T C 100 PASS AA=T;AC=1;AF=0.13;AFR_AF=0.18;AMR_AF=0.13;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.1293;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 37701048 rs11771 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.70;AMR_AF=0.19;AN=2;ASN_AF=0.24;AVGPOST=0.9980;ERATE=0.0093;EUR_AF=0.15;LDAF=0.2955;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0469;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 37701208 rs5964203 A G 100 PASS AA=A;AC=1;AF=0.37;AFR_AF=0.56;AMR_AF=0.35;AN=2;ASN_AF=0.48;AVGPOST=0.9905;ERATE=0.0121;EUR_AF=0.16;LDAF=0.3670;RSQ=0.9861;SNPSOURCE=LOWCOV,EXOME;THETA=0.0228;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 39922359 rs3810694 A G 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.89;AMR_AF=0.43;AN=2;ASN_AF=0.70;AVGPOST=0.9894;ERATE=0.0004;EUR_AF=0.42;LDAF=0.5981;RSQ=0.9852;SNPSOURCE=LOWCOV,EXOME;THETA=0.0156;VT=SNP GT:DS:GL 1|0:0.700:-1.80,-0.01,-5.00 +X 39933339 rs5917933 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.94;AMR_AF=0.94;AN=2;ASN_AF=0.97;AVGPOST=0.9984;ERATE=0.0008;EUR_AF=0.89;LDAF=0.9306;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0025;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 40456961 rs3112299 G C 100 PASS AA=C;AC=2;AF=0.91;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9196;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 40506697 rs6610447 A G 100 PASS AA=G;AC=2;AF=0.97;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9976;ERATE=0.0003;EUR_AF=0.93;LDAF=0.9698;RSQ=0.9655;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.80,-0.00 +X 40514322 rs11266293 G A 100 PASS AA=G;AC=2;AF=0.59;AFR_AF=0.16;AMR_AF=0.56;AN=2;ASN_AF=0.69;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.82;LDAF=0.5987;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 41043944 rs5918130 T C 100 PASS AA=T;AC=1;AF=0.21;AFR_AF=0.08;AMR_AF=0.20;AN=2;ASN_AF=0.09;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.40;LDAF=0.2100;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 41203119 rs2275944 G A 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.71;AMR_AF=0.65;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.6636;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 41587218 rs1023065 T C 100 PASS AA=T;AC=1;AF=0.84;AFR_AF=0.86;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.8414;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 43590970 rs138703731 G A 100 PASS AA=G;AC=1;AF=0.0012;AMR_AF=0.0036;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0017;LDAF=0.0009;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 43591036 rs6323 G T 100 PASS AA=T;AC=2;AF=0.67;AFR_AF=0.88;AMR_AF=0.71;AN=2;ASN_AF=0.40;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6668;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 43595428 rs2235186 A G 100 PASS AA=G;AC=2;AF=0.67;AFR_AF=0.88;AMR_AF=0.71;AN=2;ASN_AF=0.41;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.71;LDAF=0.6671;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 43603391 rs1137070 T C 100 PASS AA=C;AC=2;AF=0.60;AFR_AF=0.64;AMR_AF=0.63;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.70;LDAF=0.5983;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 45050973 rs4239958 C T 100 PASS AA=C;AC=1;AF=0.64;AFR_AF=0.67;AMR_AF=0.62;AN=2;ASN_AF=0.82;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.50;LDAF=0.6413;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 45051111 rs1132201 C T 100 PASS AA=C;AC=1;AF=0.43;AFR_AF=0.19;AMR_AF=0.46;AN=2;ASN_AF=0.77;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.33;LDAF=0.4356;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 46618321 rs1056846 C G 100 PASS AA=G;AC=2;AF=0.70;AFR_AF=0.97;AMR_AF=0.65;AN=2;ASN_AF=0.84;AVGPOST=0.9980;ERATE=0.0003;EUR_AF=0.46;LDAF=0.7082;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.29,-0.02 +X 46719385 rs199851354 G A 100 PASS AA=G;AC=1;AF=0.0006;AMR_AF=0.0036;AN=2;AVGPOST=0.9999;ERATE=0.0002;LDAF=0.0005;RSQ=0.9049;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +X 46949403 rs6611330 C T 100 PASS AA=C;AC=2;AF=0.58;AFR_AF=0.43;AMR_AF=0.41;AN=2;ASN_AF=0.77;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.62;LDAF=0.5743;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 47061018 rs4239964 C G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=0.96;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.98;LDAF=0.9780;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 47086347 rs6417923 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.82;AMR_AF=0.45;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.67;LDAF=0.6640;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +X 47106463 rs17327536 G C 100 PASS AA=g;AC=1;AF=0.03;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.06;LDAF=0.0290;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 47424615 rs2071776 C T 100 PASS AA=c;AC=1;AF=0.32;AFR_AF=0.45;AMR_AF=0.28;AN=2;ASN_AF=0.41;AVGPOST=0.9974;ERATE=0.0005;EUR_AF=0.19;LDAF=0.3275;RSQ=0.9922;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 47430457 rs2854412 A T 100 PASS AA=a;AC=1;AF=0.38;AFR_AF=0.29;AMR_AF=0.43;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.38;LDAF=0.3812;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-2.63,-0.00,-5.00 +X 47445940 rs11551797 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.0027;AMR_AF=0.20;AN=2;ASN_AF=0.23;AVGPOST=0.9987;ERATE=0.0006;EUR_AF=0.01;LDAF=0.0991;RSQ=0.9905;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 47466361 rs1142636 A G 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.47;AMR_AF=0.37;AN=2;ASN_AF=0.23;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.36;LDAF=0.3505;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 47483800 rs1048118 G A 100 PASS AA=G;AC=1;AF=0.18;AFR_AF=0.24;AMR_AF=0.23;AN=2;ASN_AF=0.02;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.24;LDAF=0.1772;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 47918205 rs501128 G A 100 PASS AA=.;AC=2;AF=0.66;AFR_AF=0.63;AMR_AF=0.67;AN=2;ASN_AF=0.86;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.53;LDAF=0.6638;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 47920356 rs727079 A G 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9981;RSQ=0.9436;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 48049666 rs5906557 C T 100 PASS AA=N;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9287;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 48053521 rs4239967 T C 100 PASS AA=N;AC=2;AF=0.88;AFR_AF=0.65;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=0.9969;ERATE=0.0029;EUR_AF=1.00;LDAF=0.8814;RSQ=0.9890;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.88,-0.06 +X 48054740 rs4824675 C G 100 PASS AA=N;AC=2;AF=0.88;AFR_AF=0.64;AMR_AF=0.90;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.8803;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 48317386 rs17281188 A G 100 PASS AA=a;AC=2;AF=0.09;AFR_AF=0.04;AMR_AF=0.19;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.07;LDAF=0.0883;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.87,-0.00 +X 48326216 rs2293953 A G 100 PASS AA=N;AC=2;AF=0.38;AFR_AF=0.68;AMR_AF=0.38;AN=2;ASN_AF=0.42;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.3803;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 48339985 rs2070991 C T 100 PASS AA=c;AC=1;AF=0.28;AFR_AF=0.22;AMR_AF=0.35;AN=2;ASN_AF=0.44;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2783;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 48382174 rs3048 G T 100 PASS AA=G;AC=1;AF=0.34;AFR_AF=0.25;AMR_AF=0.30;AN=2;ASN_AF=0.43;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.36;LDAF=0.3414;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 48418126 rs2293948 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.78;AMR_AF=0.43;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.5393;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 48418659 rs235836 G A 100 PASS AA=A;AC=1;AF=0.54;AFR_AF=0.78;AMR_AF=0.43;AN=2;ASN_AF=0.56;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.41;LDAF=0.5388;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 48433529 rs2249585 C T 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.22;AMR_AF=0.57;AN=2;ASN_AF=0.44;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4611;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 48460314 rs235842 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 48460625 rs235841 G C 100 PASS AA=G;AC=2;AF=0.81;AFR_AF=0.47;AMR_AF=0.86;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8076;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 48547112 rs2737799 T C 100 PASS AA=T;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.01;LDAF=0.0059;RSQ=0.9110;SNPSOURCE=EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 48759204 rs741932 C T 100 PASS AA=C;AC=1;AF=0.61;AFR_AF=0.56;AMR_AF=0.60;AN=2;ASN_AF=0.71;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.57;LDAF=0.6047;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 48847497 rs11545861 T C 100 PASS AA=T;AC=2;AF=0.31;AFR_AF=0.03;AMR_AF=0.41;AN=2;ASN_AF=0.29;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.46;LDAF=0.3158;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 48888074 rs3027472 T C 100 PASS AA=T;AC=2;AF=0.27;AFR_AF=0.05;AMR_AF=0.32;AN=2;ASN_AF=0.09;AVGPOST=0.9987;ERATE=0.0002;EUR_AF=0.53;LDAF=0.2691;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 49021256 rs5906744 A G 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0499;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 49021537 rs5905720 G C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.35,-0.00 +X 49022700 rs4824462 T C 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9998;RSQ=0.0497;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.19,-0.03 +X 49028478 rs2071314 G C 100 PASS AA=G;AC=1;AF=0.03;AMR_AF=0.05;AN=2;ASN_AF=0.07;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0326;RSQ=0.9917;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 49035732 rs141702866 C T 100 PASS AA=C;AC=1;AF=0.02;AMR_AF=0.05;AN=2;ASN_AF=0.02;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0178;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 49071964 rs2075866 A G 100 PASS AA=.;AC=1;AF=0.55;AFR_AF=0.81;AMR_AF=0.58;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.30;LDAF=0.5517;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 49077583 rs2869212 G A 100 PASS AA=.;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.4534;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0017;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 49081291 rs2235127 G A 100 PASS AA=.;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.65;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.4543;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.10 +X 49084492 rs6609854 C T 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.21;AMR_AF=0.42;AN=2;ASN_AF=0.65;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.3867;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 49087487 rs5905724 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.49;AMR_AF=0.45;AN=2;ASN_AF=0.65;AVGPOST=0.9976;ERATE=0.0011;EUR_AF=0.28;LDAF=0.4555;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-0.43,-0.21,-2.17 +X 49093528 rs2294016 T C 100 PASS AA=t;AC=1;AF=0.67;AFR_AF=0.95;AMR_AF=0.63;AN=2;ASN_AF=0.84;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.6723;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 49098631 rs2294018 A G 100 PASS AA=G;AC=1;AF=0.56;AFR_AF=0.90;AMR_AF=0.51;AN=2;ASN_AF=0.65;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.28;LDAF=0.5610;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 49103224 rs2294020 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.63;AMR_AF=0.49;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.28;LDAF=0.4789;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +X 49104815 rs2280882 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.40;AVGPOST=0.9970;ERATE=0.0010;EUR_AF=0.58;LDAF=0.4515;RSQ=0.9952;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-1.88,-0.01,-3.66 +X 49105610 rs2294021 T C 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.35;AMR_AF=0.43;AN=2;ASN_AF=0.40;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.58;LDAF=0.4528;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 49369711 rs3747318 A G 100 PASS AA=.;AC=1;AF=0.41;AFR_AF=0.13;AMR_AF=0.42;AN=2;ASN_AF=0.40;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4057;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 50056814 rs5915179 A G 100 PASS AA=A;AC=1;AF=0.38;AFR_AF=0.15;AMR_AF=0.42;AN=2;ASN_AF=0.31;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.57;LDAF=0.3784;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 50350674 rs3747282 T C 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.27;AMR_AF=0.26;AN=2;ASN_AF=0.28;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.31;LDAF=0.2811;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 50376139 rs4826618 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.22;AN=2;AVGPOST=0.9997;ERATE=0.0003;LDAF=0.0394;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 50659280 rs17003221 C T 100 PASS AA=t;AC=1;AF=0.14;AFR_AF=0.47;AMR_AF=0.08;AN=2;ASN_AF=0.06;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1422;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 52825546 rs2806838 C G 100 PASS AA=c;AC=2;AF=0.98;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9781;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 53228148 rs1977364 C A 100 PASS AA=c;AC=2;AF=0.75;AFR_AF=0.37;AMR_AF=0.88;AN=2;ASN_AF=0.69;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.97;LDAF=0.7476;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 53436232 rs1264008 G T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.99;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.9790;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 53449568 rs1264011 G A 100 PASS AA=G;AC=1;AF=0.45;AFR_AF=0.06;AMR_AF=0.50;AN=2;ASN_AF=0.54;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.60;LDAF=0.4408;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 53453272 rs144461098 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.0027;AMR_AF=0.13;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0003;LDAF=0.0261;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 53457622 rs1264013 T C 100 PASS AA=C;AC=1;AF=0.48;AFR_AF=0.21;AMR_AF=0.51;AN=2;ASN_AF=0.54;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.60;LDAF=0.4761;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 53563262 rs2234477 G A 100 PASS AA=G;AC=1;AF=0.02;AFR_AF=0.0027;AMR_AF=0.12;AN=2;ASN_AF=0.0047;AVGPOST=0.9994;ERATE=0.0002;LDAF=0.0245;RSQ=0.9818;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 53563589 rs426298 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9925;RSQ=0.9730;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 53584418 rs17276588 G A 100 PASS AA=G;AC=1;AF=0.12;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.32;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=0.02;LDAF=0.1268;RSQ=0.9912;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 53607754 rs266786 A C 100 PASS AA=A;AC=1;AF=0.36;AFR_AF=0.10;AMR_AF=0.41;AN=2;ASN_AF=0.47;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.43;LDAF=0.3675;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 53641647 rs6638360 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.06;AMR_AF=0.49;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.56;LDAF=0.4168;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 54117740 rs2495797 C A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=0.99;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9965;RSQ=0.9513;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 54209387 rs2495783 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9997;RSQ=0.0565;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|1:2.000:-3.66,-0.51,-0.16 +X 54472506 rs2230265 G A 100 PASS AA=G;AC=1;AF=0.20;AFR_AF=0.02;AMR_AF=0.23;AN=2;ASN_AF=0.52;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.08;LDAF=0.2051;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 54481833 rs3830137 C G 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.88;AMR_AF=0.37;AN=2;ASN_AF=0.62;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.4794;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 54491863 rs2071812 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.12;AVGPOST=0.9995;ERATE=0.0005;LDAF=0.0426;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 54496989 rs2239809 A G 100 PASS AA=A;AC=1;AF=0.23;AFR_AF=0.12;AMR_AF=0.25;AN=2;ASN_AF=0.52;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.08;LDAF=0.2335;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 54836361 rs1043031 A G 100 PASS AA=A;AC=1;AF=0.45;AFR_AF=0.30;AMR_AF=0.41;AN=2;ASN_AF=0.64;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4529;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 54836505 rs1043034 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.68;AMR_AF=0.43;AN=2;ASN_AF=0.64;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5437;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0059;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 54837340 rs1043044 C T 100 PASS AA=C;AC=1;AF=0.49;AFR_AF=0.48;AMR_AF=0.43;AN=2;ASN_AF=0.63;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4987;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 54838077 rs2071932 C T 100 PASS AA=C;AC=1;AF=0.47;AFR_AF=0.38;AMR_AF=0.41;AN=2;ASN_AF=0.63;AVGPOST=0.9996;ERATE=0.0004;EUR_AF=0.43;LDAF=0.4709;RSQ=0.9988;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 54840013 rs763183 C T 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.49;AMR_AF=0.43;AN=2;ASN_AF=0.63;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4982;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 55116466 rs1845444 C G 100 PASS AA=g;AC=2;AF=0.95;AFR_AF=0.78;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9459;RSQ=0.9896;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.89,-0.06 +X 55247030 rs5914273 C G 100 PASS AA=.;AC=2;AF=0.87;AFR_AF=0.51;AMR_AF=0.93;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.97;LDAF=0.8693;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.08,-0.04 +X 55248320 rs5914274 G A 100 PASS AA=.;AC=1;AF=0.31;AFR_AF=0.19;AMR_AF=0.44;AN=2;ASN_AF=0.36;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.29;LDAF=0.3019;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.49 +X 55249049 rs2148982 T C 100 PASS AA=.;AC=1;AF=0.49;AFR_AF=0.06;AMR_AF=0.46;AN=2;ASN_AF=0.64;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.68;LDAF=0.4977;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 55479299 rs11545211 G A 100 PASS AA=.;AC=1;AF=0.25;AFR_AF=0.06;AMR_AF=0.39;AN=2;ASN_AF=0.33;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.26;LDAF=0.2491;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 55757777 rs2296861 A G 100 PASS AA=A;AC=1;AF=0.06;AFR_AF=0.01;AMR_AF=0.12;AN=2;ASN_AF=0.14;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.0034;LDAF=0.0616;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 56590327 rs202132872 C G 100 PASS AA=C;AC=1;AF=0.0006;AMR_AF=0.0036;AN=2;AVGPOST=0.9989;ERATE=0.0003;LDAF=0.0010;RSQ=0.5730;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.950:-5.00,0.00,-5.00 +X 57405163 rs4826543 T C 100 PASS AA=C;AC=2;AF=0.93;AFR_AF=0.71;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9273;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 57474943 rs1821118 A T 100 PASS AA=t;AC=2;AF=0.92;AFR_AF=0.69;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9220;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 57475132 rs1367830 T C 100 PASS AA=t;AC=2;AF=0.55;AFR_AF=0.07;AMR_AF=0.55;AN=2;ASN_AF=0.68;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.76;LDAF=0.5491;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 57619648 rs1057328 G T 100 PASS AA=.;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.65,-0.01 +X 65247409 rs9633155 T A 100 PASS AA=A;AC=1;AF=0.29;AFR_AF=0.88;AMR_AF=0.23;AN=2;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.15;LDAF=0.2893;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 65392181 rs5964495 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.82;AMR_AF=0.27;AN=2;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.22;LDAF=0.3035;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 65393658 rs5918591 A G 100 PASS AA=g;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.11,-0.00 +X 65420609 rs1264215 A G 100 PASS AA=G;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0001;EUR_AF=0.94;LDAF=0.9765;RSQ=0.9964;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +X 65427040 rs806607 T C 100 PASS AA=C;AC=1;AF=0.33;AFR_AF=0.92;AMR_AF=0.29;AN=2;AVGPOST=0.9999;ERATE=0.0001;EUR_AF=0.22;LDAF=0.3318;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 65427124 rs809363 A G 100 PASS AA=A;AC=1;AF=0.24;AFR_AF=0.56;AMR_AF=0.25;AN=2;AVGPOST=0.9995;ERATE=0.0001;EUR_AF=0.21;LDAF=0.2355;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 65822607 rs1385698 T C 100 PASS AA=C;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9985;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9494;RSQ=0.9930;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.85,-0.00 +X 65824986 rs1385699 C T 100 PASS AA=C;AC=2;AF=0.69;AFR_AF=0.08;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0001;EUR_AF=0.81;LDAF=0.6910;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 68725640 rs1171942 T C 100 PASS AA=C;AC=2;AF=0.61;AFR_AF=0.83;AMR_AF=0.63;AN=2;ASN_AF=0.82;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.31;LDAF=0.6143;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 68749379 rs35383499 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.22;AMR_AF=0.60;AN=2;ASN_AF=0.31;AVGPOST=0.9979;ERATE=0.0002;EUR_AF=0.59;LDAF=0.4342;RSQ=0.9947;SNPSOURCE=LOWCOV,EXOME;THETA=0.0064;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 69459945 rs74490344 C T 100 PASS AA=T;AC=1;AF=0.95;AFR_AF=0.96;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9511;RSQ=0.9942;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 69510335 rs1199470 C T 100 PASS AA=t;AC=2;AF=0.92;AFR_AF=0.89;AMR_AF=0.92;AN=2;ASN_AF=0.95;AVGPOST=0.9815;ERATE=0.0406;EUR_AF=0.93;LDAF=0.9310;RSQ=0.8463;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 69595909 rs1199407 C G 100 PASS AA=G;AC=1;AF=0.96;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.92;LDAF=0.9575;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 69626739 rs10482161 C T 100 PASS AA=T;AC=1;AF=0.06;AFR_AF=0.11;AMR_AF=0.05;AN=2;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0625;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 69637865 rs5980934 G T 100 PASS AA=t;AC=1;AF=0.06;AFR_AF=0.12;AMR_AF=0.06;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0654;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 69645230 rs45513993 C T 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.04;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0376;RSQ=0.9869;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 69645983 rs73216706 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.03;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0425;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 69647169 rs5980939 T C 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.13;AMR_AF=0.06;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0681;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 69652762 rs2296542 A G 100 PASS AA=G;AC=2;AF=0.88;AFR_AF=0.68;AMR_AF=0.93;AN=2;ASN_AF=0.92;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.94;LDAF=0.8761;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 69672655 rs12010766 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.77;AMR_AF=0.54;AN=2;ASN_AF=0.39;AVGPOST=0.9973;ERATE=0.0003;EUR_AF=0.46;LDAF=0.5226;RSQ=0.9933;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.09,-0.72 +X 69673464 rs28391150 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.07;AMR_AF=0.11;AN=2;ASN_AF=0.01;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1008;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 69749852 rs1536250 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.68;AMR_AF=0.88;AN=2;ASN_AF=0.82;AVGPOST=0.9820;ERATE=0.0345;EUR_AF=0.84;LDAF=0.8118;RSQ=0.9396;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 69749853 rs1536251 T A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.72;AMR_AF=0.89;AN=2;ASN_AF=0.83;AVGPOST=0.9799;ERATE=0.0165;EUR_AF=0.85;LDAF=0.8326;RSQ=0.9319;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 69774517 rs4844240 A T 100 PASS AA=T;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9799;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 69844799 rs5980983 T C 100 PASS AA=T;AC=2;AF=0.12;AFR_AF=0.13;AMR_AF=0.13;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.20;LDAF=0.1147;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 69890179 rs5980996 T A 100 PASS AA=T;AC=2;AF=0.10;AFR_AF=0.05;AMR_AF=0.12;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.0955;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 70093038 rs5937008 C T 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.12;AMR_AF=0.37;AN=2;ASN_AF=0.57;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.50;LDAF=0.4054;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 70146398 rs4360450 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.77;AMR_AF=0.79;AN=2;ASN_AF=1.00;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.63;LDAF=0.7899;RSQ=0.9971;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 70282696 rs34211894 A G 100 PASS AA=g;AC=2;AF=0.61;AFR_AF=0.85;AMR_AF=0.69;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.58;LDAF=0.6102;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 70321631 rs5980742 T G 100 PASS AA=G;AC=2;AF=0.56;AFR_AF=0.91;AMR_AF=0.62;AN=2;ASN_AF=0.34;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.47;LDAF=0.5592;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 70324157 rs1130009 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.19;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.33;LDAF=0.1467;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 70339498 rs12850852 C T 100 PASS AA=.;AC=1;AF=0.15;AFR_AF=0.03;AMR_AF=0.19;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.33;LDAF=0.1476;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 70341169 rs62609586 A C 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.05;AMR_AF=0.19;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.33;LDAF=0.1518;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 70345593 rs2075790 C T 100 PASS 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AA=C;AC=1;AF=0.75;AFR_AF=0.94;AMR_AF=0.79;AN=2;ASN_AF=0.45;AVGPOST=0.9863;ERATE=0.0088;EUR_AF=0.84;LDAF=0.7544;RSQ=0.9797;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 71522126 rs2984343 C T 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.50;AMR_AF=0.26;AN=2;ASN_AF=0.45;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.10;LDAF=0.3076;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 71715133 rs72630048 G A 100 PASS AA=G;AC=1;AF=0.24;AFR_AF=0.06;AMR_AF=0.20;AN=2;ASN_AF=0.74;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.2440;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 71791912 rs11093377 C T 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.67;AMR_AF=0.35;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.3875;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 71896025 rs149014464 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.0027;AMR_AF=0.07;AN=2;ASN_AF=0.11;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.0017;LDAF=0.0429;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 73524557 rs139445685 A G 100 PASS AA=A;AC=1;AF=0.01;AMR_AF=0.03;AN=2;ASN_AF=0.01;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0082;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 73641569 rs6647476 T C 100 PASS AA=C;AC=2;AF=0.63;AFR_AF=0.72;AMR_AF=0.35;AN=2;ASN_AF=0.98;AVGPOST=0.9960;ERATE=0.0002;EUR_AF=0.45;LDAF=0.6332;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0030;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.22,-0.03 +X 73749319 rs5937843 T G 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.16;AMR_AF=0.54;AN=2;ASN_AF=0.01;AVGPOST=0.9992;ERATE=0.0001;EUR_AF=0.79;LDAF=0.3972;RSQ=0.9993;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-3.19 +X 74334687 rs4148837 T C 100 PASS AA=T;AC=1;AF=0.36;AFR_AF=0.20;AMR_AF=0.27;AN=2;ASN_AF=0.93;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.07;LDAF=0.3578;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 74494470 rs4892396 T G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.73;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=1.00;LDAF=0.9355;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 74494483 rs5981831 A G 100 PASS AA=G;AC=2;AF=0.84;AFR_AF=0.40;AMR_AF=0.94;AN=2;ASN_AF=0.98;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.97;LDAF=0.8423;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 74523367 rs972561 A G 100 PASS AA=A;AC=2;AF=0.85;AFR_AF=0.45;AMR_AF=0.95;AN=2;ASN_AF=0.98;AVGPOST=0.9996;ERATE=0.0001;EUR_AF=0.97;LDAF=0.8549;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 75004529 rs1343879 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.05;AMR_AF=0.24;AN=2;ASN_AF=0.91;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.03;LDAF=0.3003;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 77296047 rs5913631 G C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 77298857 rs4826245 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 77528317 rs320995 G A 100 PASS AA=A;AC=2;AF=0.67;AFR_AF=0.59;AMR_AF=0.67;AN=2;ASN_AF=0.60;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.78;LDAF=0.6699;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 78216024 rs6618868 A C 100 PASS 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AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=1.00;LDAF=0.9886;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 79971651 rs186391561 C T 100 PASS AA=C;AC=1;AF=0.0024;AMR_AF=0.0036;AN=2;AVGPOST=0.9997;ERATE=0.0001;EUR_AF=0.01;LDAF=0.0020;RSQ=0.8547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 79989018 rs4240018 C G 100 PASS AA=G;AC=1;AF=0.66;AFR_AF=0.95;AMR_AF=0.48;AN=2;ASN_AF=0.99;AVGPOST=0.9997;ERATE=0.0001;EUR_AF=0.33;LDAF=0.6645;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 82764040 rs5921978 A G 100 PASS AA=G;AC=2;AF=0.92;AFR_AF=0.90;AMR_AF=0.95;AN=2;ASN_AF=0.94;AVGPOST=0.9854;ERATE=0.0239;EUR_AF=0.91;LDAF=0.9367;RSQ=0.8728;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 83403178 rs1539517 G C 100 PASS 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AA=A;AC=1;AF=0.50;AFR_AF=0.49;AMR_AF=0.46;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.40;LDAF=0.5069;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0040;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 99849051 rs2073163 T C 100 PASS AA=C;AC=1;AF=0.51;AFR_AF=0.50;AMR_AF=0.47;AN=2;ASN_AF=0.68;AVGPOST=1.0000;ERATE=0.0003;EUR_AF=0.40;LDAF=0.5114;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0039;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 99919733 rs2022475 G A 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.42;AMR_AF=0.92;AN=2;ASN_AF=0.83;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.98;LDAF=0.7993;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0068;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.40,-0.00 +X 99941705 rs2022039 T C 100 PASS AA=T;AC=2;AF=0.95;AFR_AF=0.80;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9497;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 100356331 rs185678077 A G 100 PASS AA=A;AC=1;AF=0.0006;AMR_AF=0.0036;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 100505617 rs3747280 G C 100 PASS AA=G;AC=1;AF=0.32;AFR_AF=0.36;AMR_AF=0.28;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0005;EUR_AF=0.36;LDAF=0.3212;RSQ=0.9982;SNPSOURCE=LOWCOV,EXOME;THETA=0.0076;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 100511098 rs3213505 C T 100 PASS AA=C;AC=1;AF=0.32;AFR_AF=0.34;AMR_AF=0.30;AN=2;ASN_AF=0.26;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.36;LDAF=0.3236;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 100532621 rs35899692 T C 100 PASS AA=t;AC=1;AF=0.20;AFR_AF=0.25;AMR_AF=0.15;AN=2;ASN_AF=0.28;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2052;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 100547933 rs5951328 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9948;RSQ=0.9822;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 100608191 rs1135363 G A 100 PASS AA=A;AC=1;AF=0.42;AFR_AF=0.84;AMR_AF=0.42;AN=2;ASN_AF=0.43;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.15;LDAF=0.4235;RSQ=0.9987;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 100611285 rs3747288 T C 100 PASS AA=C;AC=1;AF=0.38;AFR_AF=0.65;AMR_AF=0.40;AN=2;ASN_AF=0.43;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.3780;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 100653109 rs2071228 G A 100 PASS AA=A;AC=1;AF=0.30;AFR_AF=0.77;AMR_AF=0.27;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.14;LDAF=0.3017;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 100653950 rs2071397 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.14;AMR_AF=0.10;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1028;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 100668147 rs199773177 G A 100 PASS AA=G;AC=1;AF=0.0006;AMR_AF=0.0036;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=1.0000;SNPSOURCE=EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 100911066 rs3850315 C T 100 PASS AA=c;AC=2;AF=0.96;AFR_AF=0.99;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.9566;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 101138792 rs5944882 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 101576826 rs200584518 C T 100 PASS AA=.;AC=1;AF=0.10;AFR_AF=0.03;AMR_AF=0.08;AN=2;ASN_AF=0.21;AVGPOST=0.9579;ERATE=0.0007;EUR_AF=0.08;LDAF=0.1105;RSQ=0.8062;SNPSOURCE=EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:0.550:-0.19,-0.45,-2.22 +X 101581404 rs200108909 A G 100 PASS AA=.;AC=1;AF=0.44;AFR_AF=0.38;AMR_AF=0.35;AN=2;ASN_AF=0.82;AVGPOST=0.9166;ERATE=0.0046;EUR_AF=0.25;LDAF=0.4658;RSQ=0.8777;SNPSOURCE=EXOME;THETA=0.0031;VT=SNP GT:DS:GL 0|1:0.550:-0.10,-0.68,-4.70 +X 101857678 rs55673173 C T 100 PASS AA=C;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.01;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0031;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 101912118 rs2235804 C T 100 PASS AA=C;AC=1;AF=0.10;AFR_AF=0.24;AMR_AF=0.05;AN=2;ASN_AF=0.14;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.01;LDAF=0.1001;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 101969763 rs2235805 G A 100 PASS AA=G;AC=1;AF=0.02;AMR_AF=0.01;AN=2;ASN_AF=0.06;AVGPOST=1.0000;ERATE=0.0001;LDAF=0.0178;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 102192301 rs34191945 C T 100 PASS AA=.;AC=1;AF=0.14;AFR_AF=0.41;AMR_AF=0.06;AN=2;ASN_AF=0.15;AVGPOST=0.9989;ERATE=0.0001;EUR_AF=0.01;LDAF=0.1442;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 102192315 rs61745030 G C 100 PASS AA=.;AC=1;AF=0.17;AFR_AF=0.53;AMR_AF=0.06;AN=2;ASN_AF=0.15;AVGPOST=0.9979;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1707;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-3.92,-0.00,-5.00 +X 102192330 rs61745025 T C 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.50;AMR_AF=0.05;AN=2;ASN_AF=0.14;AVGPOST=0.9960;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1592;RSQ=0.9871;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 102192681 rs61745022 C T 100 PASS AA=.;AC=1;AF=0.14;AFR_AF=0.41;AMR_AF=0.05;AN=2;ASN_AF=0.14;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.01;LDAF=0.1377;RSQ=0.9901;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +X 102192693 rs150288459 C T 100 PASS AA=.;AC=1;AF=0.16;AFR_AF=0.41;AMR_AF=0.06;AN=2;ASN_AF=0.19;AVGPOST=0.9837;ERATE=0.0109;EUR_AF=0.02;LDAF=0.1614;RSQ=0.9535;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-0.19,-0.47,-2.35 +X 102337316 rs916218 G A 100 PASS AA=G;AC=1;AF=0.08;AFR_AF=0.10;AMR_AF=0.04;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0001;EUR_AF=0.0034;LDAF=0.0859;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 102339606 rs1029305 T C 100 PASS AA=C;AC=2;AF=0.81;AFR_AF=0.97;AMR_AF=0.78;AN=2;ASN_AF=0.85;AVGPOST=0.9992;ERATE=0.0001;EUR_AF=0.70;LDAF=0.8190;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 102564583 rs7557 A G 100 PASS AA=G;AC=1;AF=0.79;AFR_AF=0.82;AMR_AF=0.80;AN=2;ASN_AF=0.99;AVGPOST=0.9921;ERATE=0.0078;EUR_AF=0.62;LDAF=0.7868;RSQ=0.9886;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 102755250 rs79820963 G A 100 PASS AA=.;AC=1;AF=0.08;AFR_AF=0.24;AMR_AF=0.04;AN=2;ASN_AF=0.06;AVGPOST=0.9781;ERATE=0.0176;EUR_AF=0.0034;LDAF=0.0715;RSQ=0.8246;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.06,-0.88 +X 102979486 rs4907817 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9994;ERATE=0.0001;EUR_AF=0.95;LDAF=0.9810;RSQ=0.9881;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 103042882 rs1126707 T C 100 PASS AA=T;AC=2;AF=0.23;AFR_AF=0.08;AMR_AF=0.30;AN=2;ASN_AF=0.25;AVGPOST=0.9996;ERATE=0.0001;EUR_AF=0.28;LDAF=0.2277;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 104992963 rs3764765 T C 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.25;AMR_AF=0.08;AN=2;ASN_AF=0.25;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.1659;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 106200202 rs6622126 G A 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.86;AMR_AF=0.70;AN=2;ASN_AF=0.95;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.7130;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 106396402 rs1298577 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.82;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.4474;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 106396455 rs1285590 A G 100 PASS AA=G;AC=2;AF=0.44;AFR_AF=0.82;AMR_AF=0.39;AN=2;ASN_AF=0.48;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.20;LDAF=0.4474;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 107396365 rs1883411 G A 100 PASS AA=g;AC=1;AF=0.38;AFR_AF=0.67;AMR_AF=0.23;AN=2;ASN_AF=0.13;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.45;LDAF=0.3839;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 107413930 rs2295912 G A 100 PASS AA=G;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.05;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0750;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 107417730 rs5973851 G A 100 PASS AA=G;AC=1;AF=0.40;AFR_AF=0.33;AMR_AF=0.50;AN=2;ASN_AF=0.63;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.23;LDAF=0.4017;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 107418906 rs4623610 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9919;RSQ=0.9825;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 107420287 rs2295915 T C 100 PASS AA=T;AC=1;AF=0.39;AFR_AF=0.30;AMR_AF=0.49;AN=2;ASN_AF=0.63;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3944;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 107423884 rs56961168 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.05;AN=2;ASN_AF=0.12;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0733;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 107433688 rs1042065 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.62;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.77;LDAF=0.5855;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 107447685 rs73636379 C T 100 PASS AA=C;AC=1;AF=0.07;AFR_AF=0.10;AMR_AF=0.05;AN=2;ASN_AF=0.12;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0727;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 107448639 rs1266730 G T 100 PASS AA=T;AC=1;AF=0.60;AFR_AF=0.65;AMR_AF=0.51;AN=2;ASN_AF=0.37;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.77;LDAF=0.5925;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 107455014 rs1266736 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9863;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 107819223 rs6622333 T C 100 PASS AA=T;AC=2;AF=0.34;AFR_AF=0.10;AMR_AF=0.48;AN=2;ASN_AF=0.62;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.21;LDAF=0.3357;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.40,-0.00 +X 107844666 rs34077552 G T 100 PASS AA=G;AC=1;AF=0.01;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0059;RSQ=0.9439;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 107865895 rs1006269 A G 100 PASS AA=A;AC=1;AF=0.18;AFR_AF=0.02;AMR_AF=0.20;AN=2;ASN_AF=0.38;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.12;LDAF=0.1747;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 107976940 rs1801164 G C 100 PASS AA=C;AC=2;AF=0.49;AFR_AF=0.63;AMR_AF=0.53;AN=2;ASN_AF=0.69;AVGPOST=0.9997;ERATE=0.0016;EUR_AF=0.22;LDAF=0.4914;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 107979512 rs2073114 C T 100 PASS AA=N;AC=2;AF=0.50;AFR_AF=0.67;AMR_AF=0.53;AN=2;ASN_AF=0.70;AVGPOST=0.9987;ERATE=0.0002;EUR_AF=0.22;LDAF=0.5038;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 107979515 rs2073115 C T 100 PASS AA=c;AC=2;AF=0.40;AFR_AF=0.41;AMR_AF=0.45;AN=2;ASN_AF=0.67;AVGPOST=0.9983;ERATE=0.0002;EUR_AF=0.17;LDAF=0.4080;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 108708516 rs502209 C T 100 PASS AA=T;AC=2;AF=0.92;AFR_AF=0.98;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.83;LDAF=0.9278;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 108904729 rs839408 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.99;LDAF=0.9959;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 109924896 rs149028104 T C 100 PASS AA=T;AC=1;AF=0.0048;AMR_AF=0.01;AN=2;ASN_AF=0.01;AVGPOST=0.9995;ERATE=0.0003;LDAF=0.0050;RSQ=0.9371;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 110459827 rs10521535 C G 100 PASS AA=C;AC=1;AF=0.06;AFR_AF=0.20;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.02;LDAF=0.0571;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 111155476 rs7050962 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.33;AMR_AF=0.04;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.07;LDAF=0.1056;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 111698036 rs6568050 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.79;AMR_AF=0.43;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.43;LDAF=0.5064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 111698613 rs7053563 T C 100 PASS AA=T;AC=1;AF=0.34;AFR_AF=0.49;AMR_AF=0.29;AN=2;ASN_AF=0.38;AVGPOST=1.0000;ERATE=0.0004;EUR_AF=0.22;LDAF=0.3377;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 114082535 rs5946005 G A 100 PASS AA=A;AC=2;AF=0.92;AFR_AF=0.93;AMR_AF=0.93;AN=2;ASN_AF=0.99;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.85;LDAF=0.9163;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 114882360 rs191032649 T C 100 PASS AA=t;AC=1;AF=0.0006;AMR_AF=0.0036;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0060;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 117521338 rs17318100 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1686;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 117528056 rs17271416 G A 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1691;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 117528142 rs6603401 C T 100 PASS AA=T;AC=1;AF=0.53;AFR_AF=0.92;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.5261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 117531099 rs5956969 C A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.92;AMR_AF=0.55;AN=2;ASN_AF=0.60;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.5261;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 117566782 rs10521584 C T 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.31;AN=2;ASN_AF=0.19;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1691;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 117742356 rs5910394 C T 100 PASS AA=C;AC=2;AF=0.57;AFR_AF=0.21;AMR_AF=0.60;AN=2;ASN_AF=0.84;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.58;LDAF=0.5743;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 118108785 rs3813933 T C 100 PASS AA=C;AC=2;AF=0.52;AFR_AF=0.31;AMR_AF=0.57;AN=2;ASN_AF=0.80;AVGPOST=0.9924;ERATE=0.0014;EUR_AF=0.44;LDAF=0.5235;RSQ=0.9888;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 118215511 rs7055713 C A 100 PASS AA=A;AC=1;AF=0.35;AFR_AF=0.71;AMR_AF=0.23;AN=2;ASN_AF=0.51;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.06;LDAF=0.3564;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 118219347 rs2305570 T C 100 PASS AA=C;AC=1;AF=0.31;AFR_AF=0.55;AMR_AF=0.22;AN=2;ASN_AF=0.51;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.06;LDAF=0.3172;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 118220720 rs3813932 A G 100 PASS AA=A;AC=1;AF=0.26;AFR_AF=0.34;AMR_AF=0.18;AN=2;ASN_AF=0.51;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.05;LDAF=0.2621;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 118222360 rs3761592 T A 100 PASS AA=T;AC=1;AF=0.28;AFR_AF=0.43;AMR_AF=0.20;AN=2;ASN_AF=0.51;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.05;LDAF=0.2856;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 118281538 rs5910522 C A 100 PASS AA=A;AC=2;AF=0.94;AFR_AF=0.76;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9989;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9385;RSQ=0.9955;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 118284579 rs5957121 G A 100 PASS AA=G;AC=1;AF=0.43;AFR_AF=0.38;AMR_AF=0.47;AN=2;ASN_AF=0.29;AVGPOST=0.9979;ERATE=0.0002;EUR_AF=0.56;LDAF=0.4218;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 118587003 rs3810755 C T 100 PASS AA=T;AC=1;AF=0.55;AFR_AF=0.58;AMR_AF=0.52;AN=2;ASN_AF=0.51;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5457;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 118603844 rs371749 T G 100 PASS AA=G;AC=1;AF=0.77;AFR_AF=0.95;AMR_AF=0.77;AN=2;ASN_AF=0.65;AVGPOST=0.9917;ERATE=0.0073;EUR_AF=0.73;LDAF=0.7682;RSQ=0.9839;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 118604436 rs12390 T C 100 PASS AA=N;AC=1;AF=0.78;AFR_AF=0.98;AMR_AF=0.78;AN=2;ASN_AF=0.65;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7785;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 118678364 rs5910611 G A 100 PASS AA=G;AC=1;AF=0.60;AFR_AF=0.37;AMR_AF=0.63;AN=2;ASN_AF=0.75;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.62;LDAF=0.5994;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 118699320 rs5910616 A G 100 PASS AA=G;AC=2;AF=0.94;AFR_AF=0.99;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.86;LDAF=0.9437;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0118;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 118892888 rs2782222 G C 100 PASS AA=c;AC=1;AF=0.60;AFR_AF=0.64;AMR_AF=0.63;AN=2;ASN_AF=0.46;AVGPOST=0.9942;ERATE=0.0006;EUR_AF=0.66;LDAF=0.5989;RSQ=0.9921;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-2.40,-0.01,-1.66 +X 118893054 rs2782223 C A 100 PASS AA=c;AC=1;AF=0.60;AFR_AF=0.64;AMR_AF=0.64;AN=2;ASN_AF=0.46;AVGPOST=0.9978;ERATE=0.0002;EUR_AF=0.66;LDAF=0.6000;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 118893137 rs2782224 T C 100 PASS AA=c;AC=1;AF=0.60;AFR_AF=0.64;AMR_AF=0.63;AN=2;ASN_AF=0.46;AVGPOST=0.9973;ERATE=0.0004;EUR_AF=0.66;LDAF=0.6000;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0046;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 118893413 rs2782225 T C 100 PASS AA=C;AC=1;AF=0.63;AFR_AF=0.77;AMR_AF=0.65;AN=2;ASN_AF=0.46;AVGPOST=0.9965;ERATE=0.0005;EUR_AF=0.66;LDAF=0.6304;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-2.10,-0.00,-5.00 +X 118985598 rs2428212 C T 100 PASS AA=T;AC=2;AF=0.77;AFR_AF=0.95;AMR_AF=0.73;AN=2;ASN_AF=0.95;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.52;LDAF=0.7674;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 119065893 rs194302 G A 100 PASS AA=A;AC=2;AF=0.65;AFR_AF=0.98;AMR_AF=0.60;AN=2;ASN_AF=0.53;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.56;LDAF=0.6534;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.44,-0.00 +X 119070411 rs194307 T A 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.70;AMR_AF=0.57;AN=2;ASN_AF=0.52;AVGPOST=0.9924;ERATE=0.0117;EUR_AF=0.54;LDAF=0.5798;RSQ=0.9885;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:1.450:-5.00,-0.01,-1.57 +X 119070567 rs194308 A T 100 PASS AA=A;AC=2;AF=0.58;AFR_AF=0.70;AMR_AF=0.57;AN=2;ASN_AF=0.51;AVGPOST=0.9944;ERATE=0.0141;EUR_AF=0.55;LDAF=0.5799;RSQ=0.9932;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 119211392 rs200607919 T C 100 PASS AA=t;AC=1;AF=0.27;AFR_AF=0.23;AMR_AF=0.26;AN=2;ASN_AF=0.21;AVGPOST=0.9560;ERATE=0.0007;EUR_AF=0.33;LDAF=0.2691;RSQ=0.8964;SNPSOURCE=EXOME;THETA=0.0039;VT=SNP GT:DS:GL 0|1:1.000:-0.48,-0.48,-0.48 +X 119394904 rs3752341 G T 100 PASS AA=G;AC=1;AF=0.50;AFR_AF=0.24;AMR_AF=0.49;AN=2;ASN_AF=0.61;AVGPOST=0.9950;ERATE=0.0004;EUR_AF=0.60;LDAF=0.5010;RSQ=0.9876;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 119402264 rs41300936 A C 100 PASS AA=A;AC=1;AF=0.40;AFR_AF=0.18;AMR_AF=0.41;AN=2;ASN_AF=0.58;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4053;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 119438372 rs41310458 T G 100 PASS AA=T;AC=1;AF=0.08;AFR_AF=0.01;AMR_AF=0.09;AN=2;ASN_AF=0.13;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.08;LDAF=0.0795;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 119590533 rs12097 T A 100 PASS AA=t;AC=1;AF=0.39;AFR_AF=0.32;AMR_AF=0.38;AN=2;ASN_AF=0.37;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.47;LDAF=0.3896;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 123034511 rs5956583 A C 100 PASS AA=a;AC=2;AF=0.33;AFR_AF=0.47;AMR_AF=0.41;AN=2;ASN_AF=0.08;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.37;LDAF=0.3172;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 123526031 rs2076165 T C 100 PASS AA=T;AC=1;AF=0.19;AFR_AF=0.13;AMR_AF=0.20;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.11;LDAF=0.1828;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 123540315 rs960869 G T 100 PASS AA=G;AC=2;AF=0.40;AFR_AF=0.40;AMR_AF=0.39;AN=2;ASN_AF=0.36;AVGPOST=0.9988;ERATE=0.0002;EUR_AF=0.43;LDAF=0.4096;RSQ=0.9975;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 125298690 rs3761552 G A 100 PASS AA=A;AC=1;AF=0.52;AFR_AF=0.83;AMR_AF=0.52;AN=2;ASN_AF=0.53;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.31;LDAF=0.5196;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 125299188 rs12014937 T G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.77;AMR_AF=0.51;AN=2;ASN_AF=0.53;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.31;LDAF=0.5028;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 125299467 rs10126452 G T 100 PASS AA=t;AC=1;AF=0.52;AFR_AF=0.82;AMR_AF=0.52;AN=2;ASN_AF=0.53;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.31;LDAF=0.5190;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 128880614 rs3747343 T C 100 PASS AA=C;AC=1;AF=0.54;AFR_AF=0.87;AMR_AF=0.34;AN=2;ASN_AF=0.75;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.28;LDAF=0.5452;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 128957640 rs2275605 T C 100 PASS AA=c;AC=2;AF=0.81;AFR_AF=0.77;AMR_AF=0.96;AN=2;ASN_AF=0.54;AVGPOST=0.9987;ERATE=0.0002;EUR_AF=0.97;LDAF=0.8083;RSQ=0.9939;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 129147079 rs4830173 T C 100 PASS AA=C;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=1.00;LDAF=0.9994;RSQ=0.2194;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 129269980 rs209998 G A 100 PASS AA=G;AC=1;AF=0.44;AFR_AF=0.66;AMR_AF=0.53;AN=2;ASN_AF=0.20;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4361;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 129283520 rs1139851 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.73;AMR_AF=0.54;AN=2;ASN_AF=0.20;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4543;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 129349295 rs209238 T G 100 PASS AA=T;AC=1;AF=0.49;AFR_AF=0.72;AMR_AF=0.53;AN=2;ASN_AF=0.37;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.42;LDAF=0.4922;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 130409774 rs188871008 T C 100 PASS AA=T;AC=1;AF=0.0006;AMR_AF=0.0036;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0004;RSQ=0.9500;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:0.950:-5.00,0.00,-5.00 +X 130410965 rs4830219 A G 100 PASS AA=A;AC=1;AF=0.27;AFR_AF=0.42;AMR_AF=0.34;AN=2;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.34;LDAF=0.2659;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 130415818 rs1128617 T C 100 PASS AA=T;AC=1;AF=0.56;AFR_AF=0.59;AMR_AF=0.49;AN=2;ASN_AF=0.71;AVGPOST=0.9971;ERATE=0.0021;EUR_AF=0.45;LDAF=0.5556;RSQ=0.9961;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 130416958 rs5932877 C T 100 PASS AA=c;AC=2;AF=0.92;AFR_AF=0.69;AMR_AF=0.97;AN=2;ASN_AF=1.00;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9247;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0032;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 130420006 rs5930458 T C 100 PASS AA=C;AC=2;AF=0.96;AFR_AF=0.85;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9611;RSQ=0.9924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0034;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 130420415 rs4495600 T C 100 PASS AA=C;AC=2;AF=0.98;AFR_AF=0.91;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9790;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 130678467 rs499030 A G 100 PASS AA=G;AC=2;AF=0.66;AFR_AF=0.81;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.6604;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 130678596 rs17316625 C G 100 PASS AA=C;AC=2;AF=0.17;AFR_AF=0.03;AMR_AF=0.20;AN=2;ASN_AF=0.05;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.34;LDAF=0.1728;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 130678844 rs655415 A C 100 PASS AA=C;AC=2;AF=0.66;AFR_AF=0.81;AMR_AF=0.57;AN=2;ASN_AF=0.66;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.61;LDAF=0.6607;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 131212512 rs5977623 A G 100 PASS AA=G;AC=1;AF=0.26;AFR_AF=0.46;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.30;LDAF=0.2608;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0023;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 131212944 rs7051368 A G 100 PASS AA=A;AC=1;AF=0.07;AFR_AF=0.11;AMR_AF=0.05;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.10;LDAF=0.0686;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 131231257 rs2064650 G A 100 PASS AA=G;AC=1;AF=0.19;AFR_AF=0.33;AMR_AF=0.09;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.19;LDAF=0.1897;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 131348510 rs41310444 A G 100 PASS AA=A;AC=1;AF=0.04;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.09;LDAF=0.0387;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.00,-4.00 +X 131518737 rs3736748 C T 100 PASS AA=T;AC=1;AF=0.35;AFR_AF=0.81;AMR_AF=0.20;AN=2;ASN_AF=0.11;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.3469;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 132437337 rs1048369 G A 100 PASS AA=G;AC=2;AF=0.39;AFR_AF=0.64;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.27;LDAF=0.3888;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 132438872 rs1129980 C A 100 PASS AA=C;AC=2;AF=0.39;AFR_AF=0.64;AMR_AF=0.27;AN=2;ASN_AF=0.42;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.28;LDAF=0.3899;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 132549013 rs2073288 G A 100 PASS AA=g;AC=2;AF=0.44;AFR_AF=0.71;AMR_AF=0.30;AN=2;ASN_AF=0.47;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.30;LDAF=0.4377;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 133379551 rs2428577 C T 100 PASS AA=T;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 133511988 rs5978001 G A 100 PASS AA=A;AC=2;AF=0.82;AFR_AF=0.78;AMR_AF=0.82;AN=2;ASN_AF=0.97;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.75;LDAF=0.8313;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.70,-0.00 +X 134156121 rs2475853 G C 100 PASS AA=c;AC=2;AF=0.70;AFR_AF=0.77;AMR_AF=0.66;AN=2;ASN_AF=0.61;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7030;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.44,-0.02 +X 134185997 rs2498776 T A 100 PASS AA=c;AC=2;AF=0.74;AFR_AF=0.93;AMR_AF=0.68;AN=2;ASN_AF=0.60;AVGPOST=0.9980;ERATE=0.0002;EUR_AF=0.74;LDAF=0.7437;RSQ=0.9969;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.66,-0.01 +X 134427640 rs5978119 C G 100 PASS AA=G;AC=2;AF=0.18;AFR_AF=0.11;AMR_AF=0.21;AN=2;ASN_AF=0.07;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.29;LDAF=0.1746;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 134948034 rs2034920 A G 100 PASS AA=G;AC=2;AF=0.80;AFR_AF=0.90;AMR_AF=0.77;AN=2;ASN_AF=0.86;AVGPOST=0.9954;ERATE=0.0003;EUR_AF=0.71;LDAF=0.7994;RSQ=0.9904;SNPSOURCE=LOWCOV,EXOME;THETA=0.0018;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +X 134948167 rs2501496 G A 100 PASS AA=A;AC=2;AF=0.84;AFR_AF=0.91;AMR_AF=0.80;AN=2;ASN_AF=0.90;AVGPOST=0.9855;ERATE=0.0005;EUR_AF=0.77;LDAF=0.8414;RSQ=0.9588;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.36,-0.02 +X 134992554 rs5975631 A G 100 PASS AA=A;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0017;LDAF=0.0270;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 135095545 rs142049079 A C 100 PASS AA=A;AC=1;AF=0.0030;AMR_AF=0.01;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0025;RSQ=0.8924;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135289902 rs28764019 C T 100 PASS AA=C;AC=1;AF=0.03;AFR_AF=0.10;AMR_AF=0.01;AN=2;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.0017;LDAF=0.0240;RSQ=0.9967;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 135307049 rs5929742 G A 100 PASS AA=G;AC=1;AF=0.52;AFR_AF=0.27;AMR_AF=0.50;AN=2;ASN_AF=0.70;AVGPOST=0.9981;ERATE=0.0028;EUR_AF=0.56;LDAF=0.5255;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135310765 rs2273220 G A 100 PASS AA=G;AC=1;AF=0.23;AFR_AF=0.01;AMR_AF=0.18;AN=2;ASN_AF=0.62;AVGPOST=0.9935;ERATE=0.0004;EUR_AF=0.12;LDAF=0.2322;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135310785 rs2273221 T C 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.71;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5290;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135313034 rs1055497 T G 100 PASS AA=g;AC=2;AF=0.57;AFR_AF=0.44;AMR_AF=0.53;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5716;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 135323452 rs5975707 G A 100 PASS AA=G;AC=1;AF=0.53;AFR_AF=0.28;AMR_AF=0.51;AN=2;ASN_AF=0.71;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.57;LDAF=0.5289;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135430044 rs877761 T C 100 PASS AA=c;AC=1;AF=0.51;AFR_AF=0.76;AMR_AF=0.47;AN=2;ASN_AF=0.37;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.48;LDAF=0.5137;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135443689 rs149125737 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.03;AMR_AF=0.01;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0017;LDAF=0.0096;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135474420 rs1329546 C A 100 PASS AA=A;AC=1;AF=0.72;AFR_AF=0.65;AMR_AF=0.76;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.7157;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 135480126 rs5974595 T C 100 PASS AA=C;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.77;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.7468;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 135496398 rs5930942 G A 100 PASS AA=A;AC=2;AF=0.75;AFR_AF=0.77;AMR_AF=0.77;AN=2;ASN_AF=0.92;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.60;LDAF=0.7473;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0022;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 135593167 rs1058376 G A 100 PASS AA=g;AC=1;AF=0.12;AFR_AF=0.43;AMR_AF=0.07;AN=2;ASN_AF=0.04;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.01;LDAF=0.1248;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135618224 rs3027859 A G 100 PASS AA=G;AC=1;AF=0.17;AFR_AF=0.59;AMR_AF=0.10;AN=2;ASN_AF=0.01;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.06;LDAF=0.1723;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0026;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135741185 rs3092923 T C 100 PASS AA=C;AC=1;AF=0.26;AFR_AF=0.77;AMR_AF=0.16;AN=2;ASN_AF=0.11;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.09;LDAF=0.2658;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 135764130 rs138342895 A G 100 PASS AA=A;AC=1;AF=0.01;AFR_AF=0.02;AMR_AF=0.0036;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.0017;LDAF=0.0064;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 136113464 rs1190736 C A 100 PASS AA=C;AC=1;AF=0.30;AFR_AF=0.02;AMR_AF=0.24;AN=2;ASN_AF=0.34;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.49;LDAF=0.3045;RSQ=0.9995;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 138633280 rs6048 A G 100 PASS AA=A;AC=1;AF=0.16;AFR_AF=0.10;AMR_AF=0.16;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.31;LDAF=0.1577;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0047;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 138642995 rs1800455 T C 100 PASS AA=T;AC=1;AF=0.0018;AMR_AF=0.0036;AN=2;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.0034;LDAF=0.0016;RSQ=0.8497;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 138724725 rs926563 G A 100 PASS AA=A;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9995;RSQ=0.6382;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 138825675 rs1268015 T C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9869;RSQ=0.9945;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.24,-0.00 +X 138897130 rs2491014 A C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=1.00;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9996;ERATE=0.0003;EUR_AF=0.97;LDAF=0.9859;RSQ=0.9820;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 138899005 rs12838569 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.01;AMR_AF=0.05;AN=2;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.12;LDAF=0.0512;RSQ=0.9893;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 139038443 rs5955139 G A 100 PASS AA=A;AC=1;AF=0.32;AFR_AF=0.62;AMR_AF=0.26;AN=2;ASN_AF=0.41;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.09;LDAF=0.3245;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 140983031 rs176023 A G 100 PASS AA=N;AC=2;AF=0.81;AFR_AF=0.85;AMR_AF=0.80;AN=2;ASN_AF=0.54;AVGPOST=0.9977;ERATE=0.0003;EUR_AF=0.98;LDAF=0.8121;RSQ=0.9915;SNPSOURCE=LOWCOV,EXOME;THETA=0.0224;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 140983064 rs176024 G A 100 PASS AA=N;AC=2;AF=0.76;AFR_AF=0.75;AMR_AF=0.78;AN=2;ASN_AF=0.51;AVGPOST=0.9975;ERATE=0.0014;EUR_AF=0.95;LDAF=0.7638;RSQ=0.9907;SNPSOURCE=LOWCOV,EXOME;THETA=0.0036;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 140983127 rs176026 G A 100 PASS AA=N;AC=2;AF=0.68;AFR_AF=0.45;AMR_AF=0.75;AN=2;ASN_AF=0.49;AVGPOST=0.9983;ERATE=0.0002;EUR_AF=0.93;LDAF=0.6775;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0024;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 140993341 rs201830037 C T 100 PASS AA=c;AC=1;AF=0.0012;AMR_AF=0.0036;AN=2;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.0017;LDAF=0.0011;RSQ=0.8998;SNPSOURCE=EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 140993642 rs176037 C T 100 PASS AA=c;AC=1;AF=0.33;AFR_AF=0.22;AMR_AF=0.34;AN=2;ASN_AF=0.21;AVGPOST=0.9968;ERATE=0.0013;EUR_AF=0.49;LDAF=0.3369;RSQ=0.9918;SNPSOURCE=LOWCOV,EXOME;THETA=0.0173;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 140994037 rs176045 C A 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.53;AMR_AF=0.34;AN=2;ASN_AF=0.19;AVGPOST=0.9212;ERATE=0.0380;EUR_AF=0.39;LDAF=0.3827;RSQ=0.8340;SNPSOURCE=LOWCOV,EXOME;THETA=0.0189;VT=SNP GT:DS:GL 0|1:1.050:-5.00,-0.02,-1.46 +X 140994591 rs176048 C G 100 PASS AA=g;AC=1;AF=0.15;AFR_AF=0.15;AMR_AF=0.15;AN=2;ASN_AF=0.01;AVGPOST=0.9910;ERATE=0.0013;EUR_AF=0.25;LDAF=0.1513;RSQ=0.9753;SNPSOURCE=LOWCOV,EXOME;THETA=0.0019;VT=SNP GT:DS:GL 1|0:1.000:-5.00,-0.10,-0.68 +X 140996364 rs12845617 G A 100 PASS AA=g;AC=1;AF=0.14;AFR_AF=0.11;AMR_AF=0.09;AN=2;ASN_AF=0.15;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.17;LDAF=0.1435;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 141290865 rs3765272 C T 100 PASS AA=-;AC=2;AF=0.73;AFR_AF=0.55;AMR_AF=0.79;AN=2;ASN_AF=0.88;AVGPOST=0.9983;ERATE=0.0003;EUR_AF=0.70;LDAF=0.7327;RSQ=0.9941;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 142122058 rs62601929 T G 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.44;AMR_AF=0.35;AN=2;ASN_AF=0.29;AVGPOST=0.9976;ERATE=0.0007;EUR_AF=0.28;LDAF=0.3314;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0209;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 142795225 rs3859898 G A 100 PASS AA=N;AC=2;AF=0.65;AFR_AF=0.61;AMR_AF=0.62;AN=2;ASN_AF=0.85;AVGPOST=0.9961;ERATE=0.0048;EUR_AF=0.53;LDAF=0.6532;RSQ=0.9956;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.72,-0.01 +X 142967468 rs237520 T G 100 PASS AA=T;AC=1;AF=0.62;AFR_AF=0.60;AMR_AF=0.59;AN=2;ASN_AF=0.63;AVGPOST=0.9992;ERATE=0.0027;EUR_AF=0.65;LDAF=0.6196;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 144904882 rs2748588 T C 100 PASS AA=C;AC=2;AF=0.94;AFR_AF=0.97;AMR_AF=0.96;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.86;LDAF=0.9375;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0014;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 147014145 rs150724379 C T 100 PASS AA=C;AC=1;AF=0.02;AFR_AF=0.01;AMR_AF=0.03;AN=2;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0165;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 147088249 rs764631 C T 100 PASS AA=T;AC=1;AF=0.45;AFR_AF=0.36;AMR_AF=0.38;AN=2;ASN_AF=0.69;AVGPOST=0.9990;ERATE=0.0002;EUR_AF=0.38;LDAF=0.4578;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 148055144 rs5980615 A G 100 PASS AA=N;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9637;RSQ=0.9938;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 148797899 rs41312624 T A 100 PASS AA=N;AC=1;AF=0.0024;AMR_AF=0.0036;AN=2;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.01;LDAF=0.0024;RSQ=0.9546;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 148856393 rs201561571 A G 100 PASS AA=A;AC=1;AF=0.69;AFR_AF=0.53;AMR_AF=0.69;AN=2;ASN_AF=0.76;AVGPOST=0.9041;ERATE=0.0022;EUR_AF=0.74;LDAF=0.6981;RSQ=0.8064;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.050:-0.48,-0.48,-0.48 +X 148856785 rs201098724 C T 100 PASS AA=C;AC=1;AF=0.12;AFR_AF=0.07;AMR_AF=0.15;AN=2;ASN_AF=0.05;AVGPOST=0.9062;ERATE=0.0069;EUR_AF=0.18;LDAF=0.1351;RSQ=0.6364;SNPSOURCE=EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:0.800:-0.48,-0.48,-0.48 +X 149013727 rs5983916 A G 100 PASS AA=.;AC=2;AF=0.87;AFR_AF=0.97;AMR_AF=0.89;AN=2;ASN_AF=0.88;AVGPOST=0.9992;ERATE=0.0003;EUR_AF=0.80;LDAF=0.8716;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 149826503 rs222410 G A 100 PASS AA=A;AC=1;AF=0.58;AFR_AF=0.92;AMR_AF=0.63;AN=2;ASN_AF=0.29;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.54;LDAF=0.5746;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 149931106 rs16995747 C T 100 PASS AA=C;AC=2;AF=0.85;AFR_AF=0.60;AMR_AF=0.92;AN=2;ASN_AF=1.00;AVGPOST=0.9987;ERATE=0.0005;EUR_AF=0.87;LDAF=0.8512;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 150348228 rs1202874 C T 100 PASS AA=T;AC=2;AF=0.79;AFR_AF=0.85;AMR_AF=0.67;AN=2;ASN_AF=0.70;AVGPOST=0.9929;ERATE=0.0116;EUR_AF=0.88;LDAF=0.7900;RSQ=0.9843;SNPSOURCE=LOWCOV,EXOME;THETA=0.0192;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 150349871 rs13440581 A G 100 PASS AA=A;AC=2;AF=0.31;AFR_AF=0.27;AMR_AF=0.30;AN=2;ASN_AF=0.01;AVGPOST=0.9954;ERATE=0.0013;EUR_AF=0.57;LDAF=0.3109;RSQ=0.9928;SNPSOURCE=LOWCOV,EXOME;THETA=0.0291;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 150789950 rs945815 C T 100 PASS AA=T;AC=2;AF=0.80;AFR_AF=0.30;AMR_AF=0.88;AN=2;ASN_AF=0.97;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.95;LDAF=0.7989;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 150840185 rs6627174 T C 100 PASS AA=T;AC=1;AF=0.38;AFR_AF=0.08;AMR_AF=0.39;AN=2;ASN_AF=0.85;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.23;LDAF=0.3849;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 150867321 rs5925008 C T 100 PASS AA=C;AC=1;AF=0.23;AFR_AF=0.02;AMR_AF=0.19;AN=2;ASN_AF=0.19;AVGPOST=0.9994;ERATE=0.0004;EUR_AF=0.41;LDAF=0.2275;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 150869267 rs4323608 A G 100 PASS AA=G;AC=2;AF=0.93;AFR_AF=0.85;AMR_AF=0.95;AN=2;ASN_AF=1.00;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.93;LDAF=0.9324;RSQ=0.9840;SNPSOURCE=LOWCOV,EXOME;THETA=0.0252;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 150884620 rs3810715 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.06;AMR_AF=0.11;AN=2;ASN_AF=0.26;AVGPOST=0.9939;ERATE=0.0004;EUR_AF=0.15;LDAF=0.1533;RSQ=0.9819;SNPSOURCE=LOWCOV,EXOME;THETA=0.0062;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.17 +X 150889857 rs72612761 C T 100 PASS AA=C;AC=1;AF=0.15;AFR_AF=0.14;AMR_AF=0.08;AN=2;ASN_AF=0.23;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.14;LDAF=0.1563;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0055;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 151092126 rs1047246 C G 100 PASS AA=C;AC=1;AF=0.46;AFR_AF=0.32;AMR_AF=0.35;AN=2;ASN_AF=0.60;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.49;LDAF=0.4619;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 151092220 rs1047248 A G 100 PASS AA=G;AC=1;AF=0.51;AFR_AF=0.62;AMR_AF=0.36;AN=2;ASN_AF=0.56;AVGPOST=0.9988;ERATE=0.0004;EUR_AF=0.49;LDAF=0.5153;RSQ=0.9979;SNPSOURCE=LOWCOV,EXOME;THETA=0.0043;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 151092653 rs1047251 G A 100 PASS AA=A;AC=1;AF=0.53;AFR_AF=0.59;AMR_AF=0.39;AN=2;ASN_AF=0.56;AVGPOST=0.9967;ERATE=0.0026;EUR_AF=0.53;LDAF=0.5316;RSQ=0.9927;SNPSOURCE=LOWCOV,EXOME;THETA=0.0178;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 151092784 rs61746135 C T 100 PASS AA=C;AC=1;AF=0.01;AFR_AF=0.01;AMR_AF=0.01;AN=2;ASN_AF=0.0023;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0122;RSQ=0.9429;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 151138179 rs1139916 A C 100 PASS AA=a;AC=2;AF=0.69;AFR_AF=0.44;AMR_AF=0.73;AN=2;ASN_AF=0.85;AVGPOST=0.9968;ERATE=0.0487;EUR_AF=0.72;LDAF=0.6840;RSQ=0.9937;SNPSOURCE=LOWCOV,EXOME;THETA=0.0080;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 151303393 rs210586 C T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0005;EUR_AF=1.00;LDAF=0.9873;RSQ=0.9732;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 151303596 rs210585 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.83;AMR_AF=0.99;AN=2;ASN_AF=1.00;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9575;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0072;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 151817820 rs6627251 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.23;AMR_AF=0.62;AN=2;ASN_AF=0.28;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.34;LDAF=0.3491;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 151821277 rs3810651 T A 100 PASS AA=A;AC=1;AF=0.46;AFR_AF=0.29;AMR_AF=0.72;AN=2;ASN_AF=0.32;AVGPOST=0.9986;ERATE=0.0043;EUR_AF=0.56;LDAF=0.4616;RSQ=0.9954;SNPSOURCE=LOWCOV,EXOME;THETA=0.0015;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 151899818 rs2233056 C T 100 PASS AA=c;AC=1;AF=0.53;AFR_AF=0.36;AMR_AF=0.31;AN=2;ASN_AF=0.71;AVGPOST=0.9965;ERATE=0.0003;EUR_AF=0.63;LDAF=0.5349;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0020;VT=SNP GT:DS:GL 1|0:1.000:-4.70,-0.00,-3.80 +X 151899913 rs2233055 T C 100 PASS AA=T;AC=1;AF=0.42;AFR_AF=0.24;AMR_AF=0.22;AN=2;ASN_AF=0.68;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.44;LDAF=0.4205;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 151904488 rs2515838 C A 100 PASS AA=C;AC=1;AF=0.53;AFR_AF=0.33;AMR_AF=0.30;AN=2;ASN_AF=0.70;AVGPOST=0.9998;ERATE=0.0006;EUR_AF=0.65;LDAF=0.5338;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 151909156 rs2515848 A G 100 PASS AA=G;AC=1;AF=0.58;AFR_AF=0.76;AMR_AF=0.78;AN=2;ASN_AF=0.32;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.56;LDAF=0.5772;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 152018832 rs5969919 T G 100 PASS AA=g;AC=2;AF=0.87;AFR_AF=0.76;AMR_AF=0.95;AN=2;ASN_AF=0.94;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.86;LDAF=0.8780;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 152138068 rs5925268 C T 100 PASS AA=c;AC=1;AF=0.24;AFR_AF=0.09;AMR_AF=0.29;AN=2;ASN_AF=0.32;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2348;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 152138078 rs2071253 C T 100 PASS AA=c;AC=1;AF=0.23;AFR_AF=0.07;AMR_AF=0.29;AN=2;ASN_AF=0.32;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.24;LDAF=0.2309;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 152226542 rs6526155 T C 100 PASS AA=N;AC=2;AF=0.91;AFR_AF=0.92;AMR_AF=0.93;AN=2;ASN_AF=0.95;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.88;LDAF=0.9143;RSQ=0.9986;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 152482064 rs2233046 T C 100 PASS AA=T;AC=1;AF=0.10;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.13;LDAF=0.1036;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 152482198 rs2233045 G A 100 PASS AA=G;AC=1;AF=0.11;AFR_AF=0.04;AMR_AF=0.07;AN=2;ASN_AF=0.15;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.13;LDAF=0.1048;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0033;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 152482917 rs2008160 T C 100 PASS AA=c;AC=1;AF=0.36;AFR_AF=0.39;AMR_AF=0.37;AN=2;ASN_AF=0.58;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.17;LDAF=0.3601;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 152728155 rs2980032 T C 100 PASS AA=C;AC=2;AF=0.51;AFR_AF=0.31;AMR_AF=0.62;AN=2;ASN_AF=0.35;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.71;LDAF=0.5096;RSQ=0.9974;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 152770230 rs4833 G A 100 PASS AA=G;AC=1;AF=0.41;AFR_AF=0.27;AMR_AF=0.51;AN=2;ASN_AF=0.50;AVGPOST=0.9987;ERATE=0.0043;EUR_AF=0.37;LDAF=0.4077;RSQ=0.9963;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 152772473 rs2073479 C T 100 PASS AA=C;AC=1;AF=0.40;AFR_AF=0.25;AMR_AF=0.49;AN=2;ASN_AF=0.52;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.36;LDAF=0.3951;RSQ=0.9992;SNPSOURCE=LOWCOV,EXOME;THETA=0.0058;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 152807425 rs762733 G A 100 PASS AA=G;AC=1;AF=0.62;AFR_AF=0.15;AMR_AF=0.75;AN=2;ASN_AF=0.63;AVGPOST=0.9974;ERATE=0.0002;EUR_AF=0.86;LDAF=0.6172;RSQ=0.9968;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 152807923 rs2980013 G C 100 PASS AA=C;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9877;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 152815089 rs3020949 A G 100 PASS AA=g;AC=2;AF=0.99;AFR_AF=0.94;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9891;RSQ=0.9943;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 152821887 rs3020957 C T 100 PASS AA=T;AC=2;AF=0.96;AFR_AF=0.84;AMR_AF=0.98;AN=2;ASN_AF=1.00;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9601;RSQ=0.9880;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.46,-0.02 +X 152821896 rs2269414 C T 100 PASS AA=C;AC=1;AF=0.13;AFR_AF=0.36;AMR_AF=0.03;AN=2;ASN_AF=0.10;AVGPOST=0.9989;ERATE=0.0002;EUR_AF=0.05;LDAF=0.1323;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.68,-0.10 +X 152823728 rs2269415 G C 100 PASS AA=G;AC=1;AF=0.49;AFR_AF=0.13;AMR_AF=0.66;AN=2;ASN_AF=0.65;AVGPOST=0.9991;ERATE=0.0047;EUR_AF=0.54;LDAF=0.4966;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 152825414 rs3020959 G T 100 PASS AA=G;AC=2;AF=0.91;AFR_AF=0.68;AMR_AF=0.96;AN=2;ASN_AF=0.99;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.97;LDAF=0.9073;RSQ=0.9980;SNPSOURCE=LOWCOV,EXOME;THETA=0.0008;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 152825433 rs2980018 A G 100 PASS AA=G;AC=2;AF=0.99;AFR_AF=0.95;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9898;RSQ=0.9615;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 153008911 rs4898368 C T 100 PASS AA=c;AC=1;AF=0.58;AFR_AF=0.50;AMR_AF=0.65;AN=2;ASN_AF=0.56;AVGPOST=0.9850;ERATE=0.0015;EUR_AF=0.62;LDAF=0.5838;RSQ=0.9787;SNPSOURCE=LOWCOV,EXOME;THETA=0.0050;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.01,-1.58 +X 153037275 rs6643644 C T 100 PASS AA=T;AC=1;AF=0.82;AFR_AF=0.90;AMR_AF=0.85;AN=2;ASN_AF=0.75;AVGPOST=0.9957;ERATE=0.0005;EUR_AF=0.80;LDAF=0.8168;RSQ=0.9862;SNPSOURCE=LOWCOV,EXOME;THETA=0.0037;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-4.70 +X 153037594 rs11156607 C G 100 PASS AA=G;AC=1;AF=0.80;AFR_AF=0.84;AMR_AF=0.81;AN=2;ASN_AF=0.74;AVGPOST=0.9958;ERATE=0.0015;EUR_AF=0.80;LDAF=0.7957;RSQ=0.9911;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153038516 rs5945161 C G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-3.66,-0.00 +X 153038661 rs2266885 G C 100 PASS AA=G;AC=1;AF=0.82;AFR_AF=0.90;AMR_AF=0.83;AN=2;ASN_AF=0.76;AVGPOST=0.9987;ERATE=0.0021;EUR_AF=0.80;LDAF=0.8199;RSQ=0.9951;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153039502 rs6643791 G C 100 PASS AA=G;AC=1;AF=0.78;AFR_AF=0.73;AMR_AF=0.82;AN=2;ASN_AF=0.77;AVGPOST=0.9949;ERATE=0.0007;EUR_AF=0.80;LDAF=0.7809;RSQ=0.9882;SNPSOURCE=LOWCOV,EXOME;THETA=0.0012;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153039615 rs1543781 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=1.00;LDAF=0.9999;RSQ=0.0498;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-2.34,-0.00 +X 153041132 rs5945162 C T 100 PASS AA=c;AC=1;AF=0.18;AFR_AF=0.11;AMR_AF=0.17;AN=2;ASN_AF=0.24;AVGPOST=0.9995;ERATE=0.0003;EUR_AF=0.20;LDAF=0.1845;RSQ=0.9985;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153041544 rs5987155 T C 100 PASS AA=t;AC=1;AF=0.82;AFR_AF=0.89;AMR_AF=0.82;AN=2;ASN_AF=0.76;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.80;LDAF=0.8145;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153042419 rs34966902 G A 100 PASS AA=G;AC=1;AF=0.47;AFR_AF=0.51;AMR_AF=0.45;AN=2;ASN_AF=0.18;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.66;LDAF=0.4667;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.22 +X 153044369 rs2071121 C A 100 PASS AA=C;AC=1;AF=0.17;AFR_AF=0.11;AMR_AF=0.16;AN=2;ASN_AF=0.24;AVGPOST=0.9991;ERATE=0.0003;EUR_AF=0.18;LDAF=0.1767;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-3.49,-0.50,-0.17 +X 153048403 rs916001 T C 100 PASS AA=C;AC=1;AF=0.55;AFR_AF=0.51;AMR_AF=0.58;AN=2;ASN_AF=0.85;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.35;LDAF=0.5525;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153049345 rs4898441 G A 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1565;RSQ=0.9977;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153049354 rs4898442 A G 100 PASS AA=G;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9993;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1559;RSQ=0.9973;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153049389 rs3969088 A G 100 PASS AA=G;AC=1;AF=0.59;AFR_AF=0.71;AMR_AF=0.57;AN=2;ASN_AF=0.82;AVGPOST=0.9987;ERATE=0.0002;EUR_AF=0.35;LDAF=0.5893;RSQ=0.9983;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153049535 rs4898444 A G 100 PASS AA=G;AC=1;AF=0.54;AFR_AF=0.50;AMR_AF=0.55;AN=2;ASN_AF=0.82;AVGPOST=0.9981;ERATE=0.0004;EUR_AF=0.34;LDAF=0.5386;RSQ=0.9965;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153049739 rs2269366 C T 100 PASS AA=C;AC=1;AF=0.16;AFR_AF=0.11;AMR_AF=0.15;AN=2;ASN_AF=0.19;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.16;LDAF=0.1551;RSQ=0.9976;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153051907 rs2071122 G A 100 PASS AA=g;AC=1;AF=0.41;AFR_AF=0.34;AMR_AF=0.43;AN=2;ASN_AF=0.63;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.29;LDAF=0.4121;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153052649 rs2071123 C A 100 PASS AA=C;AC=1;AF=0.41;AFR_AF=0.33;AMR_AF=0.43;AN=2;ASN_AF=0.63;AVGPOST=0.9993;ERATE=0.0004;EUR_AF=0.29;LDAF=0.4090;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0011;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153170980 rs56689668 T G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=0.99;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9984;RSQ=0.7560;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.38,-0.02 +X 153171993 rs5201 A G 100 PASS AA=g;AC=1;AF=0.60;AFR_AF=0.88;AMR_AF=0.61;AN=2;ASN_AF=0.73;AVGPOST=0.9869;ERATE=0.0029;EUR_AF=0.32;LDAF=0.5923;RSQ=0.9826;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153175586 rs3213440 G C 100 PASS AA=G;AC=1;AF=0.13;AFR_AF=0.11;AMR_AF=0.13;AN=2;ASN_AF=0.13;AVGPOST=0.9931;ERATE=0.0282;EUR_AF=0.15;LDAF=0.1319;RSQ=0.9661;SNPSOURCE=LOWCOV,EXOME;THETA=0.0045;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153176254 rs2070097 A G 100 PASS AA=a;AC=2;AF=0.63;AFR_AF=0.88;AMR_AF=0.61;AN=2;ASN_AF=0.73;AVGPOST=0.9909;ERATE=0.0046;EUR_AF=0.40;LDAF=0.6273;RSQ=0.9849;SNPSOURCE=LOWCOV,EXOME;THETA=0.0077;VT=SNP GT:DS:GL 1|1:1.950:-5.00,-1.83,-0.01 +X 153195393 rs2071128 G A 100 PASS AA=G;AC=1;AF=0.28;AFR_AF=0.01;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.15;LDAF=0.2797;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153196345 rs2071131 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.05;AMR_AF=0.35;AN=2;ASN_AF=0.67;AVGPOST=0.9999;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2889;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153215839 rs3027875 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.06;AMR_AF=0.28;AN=2;ASN_AF=0.0047;AVGPOST=0.9902;ERATE=0.0003;EUR_AF=0.64;LDAF=0.2901;RSQ=0.9850;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153216036 rs2071132 G A 100 PASS AA=A;AC=1;AF=0.50;AFR_AF=0.69;AMR_AF=0.45;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.20;LDAF=0.4953;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153218365 rs3027878 C A 100 PASS AA=C;AC=1;AF=0.34;AFR_AF=0.07;AMR_AF=0.39;AN=2;ASN_AF=0.77;AVGPOST=0.9956;ERATE=0.0004;EUR_AF=0.17;LDAF=0.3379;RSQ=0.9958;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,-0.00,-3.52 +X 153219665 rs2071133 C T 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.40;AN=2;ASN_AF=0.77;AVGPOST=0.9982;ERATE=0.0003;EUR_AF=0.19;LDAF=0.3537;RSQ=0.9962;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153220360 rs1051152 A G 100 PASS AA=g;AC=1;AF=0.50;AFR_AF=0.69;AMR_AF=0.45;AN=2;ASN_AF=0.78;AVGPOST=0.9989;ERATE=0.0003;EUR_AF=0.19;LDAF=0.4964;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153221657 rs730106 T C 100 PASS AA=C;AC=1;AF=0.50;AFR_AF=0.69;AMR_AF=0.45;AN=2;ASN_AF=0.78;AVGPOST=0.9995;ERATE=0.0004;EUR_AF=0.19;LDAF=0.4965;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153222835 rs2071134 G C 100 PASS AA=G;AC=1;AF=0.33;AFR_AF=0.07;AMR_AF=0.39;AN=2;ASN_AF=0.76;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.16;LDAF=0.3332;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153225634 rs17421 G C 100 PASS AA=G;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.39;AN=2;ASN_AF=0.77;AVGPOST=0.9970;ERATE=0.0004;EUR_AF=0.18;LDAF=0.3511;RSQ=0.9950;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153227770 rs59607260 G A 100 PASS AA=G;AC=1;AF=0.36;AFR_AF=0.11;AMR_AF=0.40;AN=2;ASN_AF=0.77;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3553;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153247722 rs2266890 C T 100 PASS AA=c;AC=1;AF=0.35;AFR_AF=0.11;AMR_AF=0.41;AN=2;ASN_AF=0.73;AVGPOST=0.9992;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3451;RSQ=0.9989;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153247745 rs7350355 A G 100 PASS AA=G;AC=1;AF=0.46;AFR_AF=0.56;AMR_AF=0.45;AN=2;ASN_AF=0.73;AVGPOST=0.9986;ERATE=0.0003;EUR_AF=0.20;LDAF=0.4519;RSQ=0.9978;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153247954 rs6571303 C T 100 PASS AA=C;AC=1;AF=0.35;AFR_AF=0.10;AMR_AF=0.41;AN=2;ASN_AF=0.73;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.19;LDAF=0.3435;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153248248 rs13397 G A 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.02;AMR_AF=0.35;AN=2;ASN_AF=0.69;AVGPOST=0.9998;ERATE=0.0003;EUR_AF=0.15;LDAF=0.2863;RSQ=0.9990;SNPSOURCE=LOWCOV,EXOME;THETA=0.0028;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153278829 rs1059703 G A 100 PASS AA=G;AC=1;AF=0.57;AFR_AF=0.64;AMR_AF=0.58;AN=2;ASN_AF=0.20;AVGPOST=0.9839;ERATE=0.0108;EUR_AF=0.80;LDAF=0.5746;RSQ=0.9725;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153284192 rs1059702 A G 100 PASS AA=.;AC=1;AF=0.68;AFR_AF=0.97;AMR_AF=0.65;AN=2;ASN_AF=0.20;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.86;LDAF=0.6828;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0002;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153284483 rs1059701 G A 100 PASS AA=.;AC=1;AF=0.48;AFR_AF=0.25;AMR_AF=0.56;AN=2;ASN_AF=0.18;AVGPOST=0.9995;ERATE=0.0002;EUR_AF=0.81;LDAF=0.4859;RSQ=0.9981;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153418456 rs75719797 G A 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=0.9811;ERATE=0.0005;EUR_AF=0.03;LDAF=0.0477;RSQ=0.7999;SNPSOURCE=EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-2.16,-0.01,-1.95 +X 153418460 rs78407189 C A 100 PASS AA=C;AC=1;AF=0.04;AFR_AF=0.02;AMR_AF=0.02;AN=2;ASN_AF=0.10;AVGPOST=0.9815;ERATE=0.0002;EUR_AF=0.03;LDAF=0.0458;RSQ=0.8029;SNPSOURCE=EXOME;THETA=0.0022;VT=SNP GT:DS:GL 0|1:1.000:-2.16,-0.01,-1.98 +X 153418468 rs72616469 G C 100 PASS AA=G;AC=1;AF=0.05;AFR_AF=0.03;AMR_AF=0.03;AN=2;ASN_AF=0.07;AVGPOST=0.9775;ERATE=0.0080;EUR_AF=0.06;LDAF=0.0547;RSQ=0.8053;SNPSOURCE=LOWCOV,EXOME;THETA=0.0013;VT=SNP GT:DS:GL 0|1:0.800:-0.60,-0.21,-0.86 +X 153629155 rs12012747 A G 100 PASS AA=A;AC=2;AF=0.71;AFR_AF=0.17;AMR_AF=0.77;AN=2;ASN_AF=0.90;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.91;LDAF=0.7175;RSQ=0.9999;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-4.00,-0.00 +X 153633359 rs1130929 G C 100 PASS AA=G;AC=2;AF=0.73;AFR_AF=0.24;AMR_AF=0.78;AN=2;ASN_AF=0.90;AVGPOST=0.9997;ERATE=0.0002;EUR_AF=0.91;LDAF=0.7375;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 153633926 rs201038440 C T 100 PASS AA=C;AC=1;AF=0.0006;AMR_AF=0.0036;AN=2;AVGPOST=0.9998;ERATE=0.0002;LDAF=0.0006;RSQ=0.6437;SNPSOURCE=EXOME;THETA=0.0010;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 153633953 rs1050094 T C 100 PASS AA=C;AC=2;AF=0.88;AFR_AF=0.85;AMR_AF=0.84;AN=2;ASN_AF=0.90;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.91;LDAF=0.8848;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-1.84,-0.01 +X 153657083 rs28497482 A G 100 PASS AA=N;AC=2;AF=0.91;AFR_AF=0.92;AMR_AF=0.86;AN=2;ASN_AF=0.93;AVGPOST=0.9974;ERATE=0.0003;EUR_AF=0.92;LDAF=0.9150;RSQ=0.9891;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-0.90,-0.06 +X 153696247 rs5987266 G C 100 PASS AA=C;AC=1;AF=0.29;AFR_AF=0.82;AMR_AF=0.12;AN=2;ASN_AF=0.13;AVGPOST=0.9984;ERATE=0.0032;EUR_AF=0.13;LDAF=0.2841;RSQ=0.9960;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153706264 rs6567 C G 100 PASS AA=C;AC=1;AF=0.19;AFR_AF=0.45;AMR_AF=0.08;AN=2;ASN_AF=0.13;AVGPOST=0.9988;ERATE=0.0012;EUR_AF=0.11;LDAF=0.1899;RSQ=0.9940;SNPSOURCE=LOWCOV,EXOME;THETA=0.0009;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153714030 rs5945433 G T 100 PASS AA=G;AC=1;AF=0.29;AFR_AF=0.85;AMR_AF=0.12;AN=2;ASN_AF=0.12;AVGPOST=0.9991;ERATE=0.0002;EUR_AF=0.13;LDAF=0.2879;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0016;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153880830 rs4326559 A C 100 PASS AA=a;AC=1;AF=0.46;AFR_AF=0.93;AMR_AF=0.43;AN=2;ASN_AF=0.22;AVGPOST=0.9998;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4616;RSQ=0.9997;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153881525 rs17328091 G C 100 PASS AA=g;AC=1;AF=0.45;AFR_AF=0.90;AMR_AF=0.43;AN=2;ASN_AF=0.22;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.35;LDAF=0.4521;RSQ=0.9996;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 153994596 rs2728532 G T 100 PASS AA=T;AC=2;AF=0.99;AFR_AF=0.97;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=0.9931;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 154020114 rs1126762 C A 100 PASS AA=A;AC=2;AF=0.62;AFR_AF=0.18;AMR_AF=0.65;AN=2;ASN_AF=0.79;AVGPOST=0.9999;ERATE=0.0002;EUR_AF=0.77;LDAF=0.6207;RSQ=0.9998;SNPSOURCE=LOWCOV,EXOME;THETA=0.0003;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 154158285 rs1800291 G C 100 PASS AA=c;AC=1;AF=0.25;AFR_AF=0.66;AMR_AF=0.18;AN=2;ASN_AF=0.07;AVGPOST=0.9994;ERATE=0.0002;EUR_AF=0.14;LDAF=0.2455;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 154448591 rs185917284 G A 100 PASS AA=G;AC=1;AF=0.0006;AMR_AF=0.0036;AN=2;AVGPOST=1.0000;ERATE=0.0002;LDAF=0.0005;RSQ=0.9547;SNPSOURCE=LOWCOV,EXOME;THETA=0.0007;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 154456747 rs572013 A G 100 PASS AA=G;AC=2;AF=1.00;AFR_AF=1.00;AMR_AF=1.00;AN=2;ASN_AF=1.00;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=1.00;LDAF=1.0000;RSQ=0.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0005;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 154507173 rs559165 T G 100 PASS AA=T;AC=1;AF=0.33;AFR_AF=0.59;AMR_AF=0.38;AN=2;ASN_AF=0.24;AVGPOST=1.0000;ERATE=0.0002;EUR_AF=0.21;LDAF=0.3359;RSQ=1.0000;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 0|1:1.000:-5.00,0.00,-5.00 +X 154774707 rs2305518 C T 100 PASS AA=T;AC=1;AF=0.67;AFR_AF=0.41;AMR_AF=0.62;AN=2;ASN_AF=0.76;AVGPOST=0.9996;ERATE=0.0002;EUR_AF=0.79;LDAF=0.6646;RSQ=0.9994;SNPSOURCE=LOWCOV,EXOME;THETA=0.0004;VT=SNP GT:DS:GL 1|0:1.000:-5.00,0.00,-5.00 +X 155004437 rs140356331 G T 100 PASS AA=T;AC=2;AF=0.65;AFR_AF=0.46;AMR_AF=0.74;AN=2;ASN_AF=0.73;AVGPOST=0.9991;ERATE=0.0069;EUR_AF=0.69;LDAF=0.6552;RSQ=0.9984;SNPSOURCE=LOWCOV,EXOME;THETA=0.0029;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +X 155233098 rs138096180 T C 100 PASS AA=t;AC=2;AF=0.57;AFR_AF=0.86;AMR_AF=0.38;AN=2;ASN_AF=0.71;AVGPOST=0.9994;ERATE=0.0003;EUR_AF=0.35;LDAF=0.5653;RSQ=0.9991;SNPSOURCE=LOWCOV,EXOME;THETA=0.0006;VT=SNP GT:DS:GL 1|1:2.000:-5.00,-5.00,0.00 +17 78184421 . C T 100 PASS EFFECT=NONSYNONYMOUS;HGVS=SGSH(uc002jya.4:exon7:c.730G>A:p.E244K);GENE=SGSH;INHERITANCE=AR;MIM=252900 GT:DS:GL 1|1:2.000:-5.00,-1.10,-0.04 diff --git a/exomiser-cli/src/test/resources/Pfeiffer-quartet.ped b/exomiser-cli/src/main/resources/vcf/Pfeiffer-quartet.ped similarity index 100% rename from exomiser-cli/src/test/resources/Pfeiffer-quartet.ped rename to exomiser-cli/src/main/resources/vcf/Pfeiffer-quartet.ped diff --git a/exomiser-cli/src/test/resources/Pfeiffer-quartet.vcf.gz b/exomiser-cli/src/main/resources/vcf/Pfeiffer-quartet.vcf.gz similarity index 100% rename from exomiser-cli/src/test/resources/Pfeiffer-quartet.vcf.gz rename to exomiser-cli/src/main/resources/vcf/Pfeiffer-quartet.vcf.gz diff --git a/exomiser-cli/src/test/resources/Pfeiffer.vcf b/exomiser-cli/src/main/resources/vcf/Pfeiffer.vcf similarity index 100% rename from exomiser-cli/src/test/resources/Pfeiffer.vcf rename to exomiser-cli/src/main/resources/vcf/Pfeiffer.vcf diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/config/CommandLineOptionsConfigTest.java b/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/config/CommandLineOptionsConfigTest.java deleted file mode 100644 index bb073015e..000000000 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/config/CommandLineOptionsConfigTest.java +++ /dev/null @@ -1,154 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.cli.config; - -import de.charite.compbio.exomiser.cli.options.BatchFileOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.SettingsFileOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.FullAnalysisOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.HpoIdsOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.InheritanceModeOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.NumGenesOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.OptionMarshaller; -import de.charite.compbio.exomiser.cli.options.OutFilePrefixOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.OutFileFormatOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.PedFileOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.PrioritiserOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.SeedGenesOptionMarshaller; -import de.charite.compbio.exomiser.cli.options.VcfFileOptionMarshaller; -import java.util.Map; -import javax.annotation.Resource; -import org.apache.commons.cli.Option; -import org.apache.commons.cli.Options; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.*; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -/** - * Tests for the command line options. - * - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = CommandLineOptionsConfig.class) -public class CommandLineOptionsConfigTest { - - @Autowired - private Options options; - - @Resource - private Map optionMarshallers; - - private void isCorrectlyConfiguredAndHasOption(OptionMarshaller expected) { - String commandLineParameter = expected.getCommandLineParameter(); - - OptionMarshaller optionMarshaller = optionMarshallers.get(commandLineParameter); - assertThat(optionMarshallers.containsKey(commandLineParameter), is(true)); - assertThat(expected, equalTo(optionMarshaller)); - - Option option = options.getOption(commandLineParameter); - assertThat(option.getLongOpt(), equalTo(commandLineParameter)); - } - - @Test - public void containsVcfFileOptionMarshaller() { - OptionMarshaller optionMarshaller = new VcfFileOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - } - - @Test - public void containsPedFileOptionMarshaller() { - OptionMarshaller optionMarshaller = new PedFileOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - } - - @Test - public void containsPrioritiserOptionMarshaller() { - OptionMarshaller optionMarshaller = new PrioritiserOptionMarshaller(); - Option option = optionMarshaller.getOption(); - String description = option.getDescription(); - System.out.println(description); - assertThat(description.isEmpty(), is(false)); - } - - @Test - public void containsSettingsFileOptionMarshaller() { - OptionMarshaller optionMarshaller = new SettingsFileOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - } - - @Test - public void seedGenesOptionsCanHaveMultipleCommaSeparatedValues() { - OptionMarshaller optionMarshaller = new SeedGenesOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - - Option option = optionMarshaller.getOption(); - assertThat(option.hasArgs(), is(true)); - assertThat(option.getValueSeparator(), equalTo(',')); - } - - @Test - public void hpoIdsOptionsCanHaveMultipleCommaSeparatedValues() { - OptionMarshaller optionMarshaller = new HpoIdsOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - - Option option = optionMarshaller.getOption(); - assertThat(option.hasArgs(), is(true)); - assertThat(option.getValueSeparator(), equalTo(',')); - } - - @Test - public void containsInheritanceModeOptionAndTakesArgs() { - OptionMarshaller optionMarshaller = new InheritanceModeOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - - Option option = optionMarshaller.getOption(); - assertThat(option.hasArg(), is(true)); - } - - @Test - public void containsBatchFileOptionMarshaller() { - OptionMarshaller optionMarshaller = new BatchFileOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - } - - - @Test - public void containsFullAnalysisOptionMarshallerAndTakesArgs() { - OptionMarshaller optionMarshaller = new FullAnalysisOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - - Option option = optionMarshaller.getOption(); - assertThat(option.hasArg(), is(true)); - } - - @Test - public void containsNumGenesOptionMarshaller() { - OptionMarshaller optionMarshaller = new NumGenesOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - } - - @Test - public void testOutFilePrefixOptionMarshaller() { - OptionMarshaller optionMarshaller = new OutFilePrefixOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - - Option option = optionMarshaller.getOption(); - assertThat(option.hasArg(), is(true)); - } - - @Test - public void containsOutFormatOptionMarshaller() { - OptionMarshaller optionMarshaller = new OutFileFormatOptionMarshaller(); - isCorrectlyConfiguredAndHasOption(optionMarshaller); - } - -} diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshallerTest.java b/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshallerTest.java deleted file mode 100644 index 31ecf2b27..000000000 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshallerTest.java +++ /dev/null @@ -1,80 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.cli.options; - -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import java.nio.file.Paths; -import org.apache.commons.cli.Option; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PathogenicityFilterCutOffOptionMarshallerTest { - - private PathogenicityFilterCutOffOptionMarshaller instance; - private Option option; - private SettingsBuilder settingsBuilder; - - @Before - public void setUp() { - instance = new PathogenicityFilterCutOffOptionMarshaller(); - option = instance.getOption(); - settingsBuilder = new Settings.SettingsBuilder(); - settingsBuilder.vcfFilePath(Paths.get("test.vcf")); - settingsBuilder.usePrioritiser(PriorityType.OMIM_PRIORITY); - } - - @Test - public void testOptionCommandLineParameter() { - assertThat(instance.getCommandLineParameter(), equalTo("keep-non-pathogenic")); - } - - @Test - public void testThatOptionHasOptionalArgument() { - assertThat(option.hasOptionalArg(), is(true)); - } - - @Test - public void testSettingsRemovePathFilterCutOffIsFalseByDefault() { - Settings settings = settingsBuilder.build(); - assertThat(settings.removePathFilterCutOff(), is(false)); - } - - @Test - public void testSettingsBuilderAppliesTrueWhenSetWithNullValue() { - instance.applyValuesToSettingsBuilder(null, settingsBuilder); - Settings settings = settingsBuilder.build(); - - assertThat(settings.removePathFilterCutOff(), is(true)); - } - - @Test - public void testSettingsBuilderAppliesArgFalse() { - String[] args = {"false"}; - instance.applyValuesToSettingsBuilder(args, settingsBuilder); - Settings settings = settingsBuilder.build(); - - assertThat(settings.removePathFilterCutOff(), is(false)); - } - - @Test - public void testSettingsBuilderAppliesArgTrue() { - String[] args = {"true"}; - instance.applyValuesToSettingsBuilder(args, settingsBuilder); - Settings settings = settingsBuilder.build(); - - assertThat(settings.removePathFilterCutOff(), is(true)); - } - -} diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/BatchFileReaderTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/BatchFileReaderTest.java similarity index 92% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/BatchFileReaderTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/BatchFileReaderTest.java index 2b5b96837..3eef79ede 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/BatchFileReaderTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/BatchFileReaderTest.java @@ -17,20 +17,18 @@ * along with this program. If not, see . */ -package de.charite.compbio.exomiser.cli; +package org.monarchinitiative.exomiser.cli; -import org.hamcrest.CoreMatchers; import org.junit.Before; import org.junit.Test; -import java.io.FileNotFoundException; import java.nio.file.Path; import java.nio.file.Paths; import java.util.List; import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.core.Is.is; -import static org.junit.Assert.*; +import static org.junit.Assert.assertThat; /** * @author Jules Jacobsen diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/CommandLineOptionsParserTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/CommandLineOptionsParserTest.java similarity index 89% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/CommandLineOptionsParserTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/CommandLineOptionsParserTest.java index ca61ed0b3..919b9364d 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/CommandLineOptionsParserTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/CommandLineOptionsParserTest.java @@ -1,41 +1,52 @@ +/* + * The Exomiser - A tool to annotate and prioritize variants + * + * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli; - -import de.charite.compbio.exomiser.cli.config.CommandLineOptionsConfig; -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.EnumSet; -import java.util.List; -import java.util.Set; -import java.util.logging.Level; -import java.util.logging.Logger; -import org.apache.commons.cli.CommandLine; -import org.apache.commons.cli.GnuParser; -import org.apache.commons.cli.Options; -import org.apache.commons.cli.ParseException; -import org.apache.commons.cli.Parser; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; -import static org.junit.Assert.assertEquals; -import static org.junit.Assert.assertThat; +package org.monarchinitiative.exomiser.cli; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.apache.commons.cli.*; import org.junit.Test; import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.cli.config.CommandLineOptionsConfig; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import java.nio.file.Paths; +import java.util.*; +import java.util.logging.Level; +import java.util.logging.Logger; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertThat; + /** * * @author Jules Jacobsen @@ -60,14 +71,14 @@ public class CommandLineOptionsParserTest { */ private Settings parseSettingsFromInput(String input) { String[] args = input.split(" "); - Parser parser = new GnuParser(); + CommandLineParser parser = new DefaultParser(); CommandLine commandLine = null; try { commandLine = parser.parse(options, args); } catch (ParseException ex) { Logger.getLogger(CommandLineOptionsParserTest.class.getName()).log(Level.SEVERE, null, ex); } - return instance.parseCommandLine(commandLine).build(); + return instance.parseCommandLine(commandLine); } @Test @@ -116,13 +127,13 @@ public void throwsExceptionsWhenInvalidSettingsFileIsProvided() { @Test public void shouldProduceValidSettingsWhenValidSettingsFileIsProvided() { String input = "--settings-file src/test/resources/testValidSettings.properties"; - SettingsBuilder settingsBuilder = new Settings.SettingsBuilder(); + SettingsBuilder settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(Paths.get("sampleData.vcf")); settingsBuilder.pedFilePath(Paths.get("")); settingsBuilder.usePrioritiser(PriorityType.PHIVE_PRIORITY); settingsBuilder.maximumFrequency(0.01f); settingsBuilder.minimumQuality(0f); - settingsBuilder.removePathFilterCutOff(true); + settingsBuilder.keepNonPathogenic(true); settingsBuilder.removeKnownVariants(true); settingsBuilder.keepOffTargetVariants(true); settingsBuilder.candidateGene("FGFR2"); @@ -151,7 +162,7 @@ public void shouldProduceValidSettingsWhenIncompleteSettingsFileIsProvided() { System.out.println(exomiserSettings); assertThat(exomiserSettings.getMaximumFrequency(), equalTo(100f)); - assertThat(exomiserSettings.removePathFilterCutOff(), is(false)); + assertThat(exomiserSettings.keepNonPathogenicVariants(), is(false)); } @Test @@ -202,6 +213,16 @@ public void should_produce_settings_with_a_null_ped_path_if_not_specified() { assertThat(exomiserSettings.getPedPath(), nullValue()); } + @Test + public void parsesProbandSampleName() { + String probandSampleName = "AGENT-47"; + String input = String.format("-v 123.vcf --proband %s", probandSampleName); + + Settings exomiserSettings = parseSettingsFromInput(input); + + assertThat(exomiserSettings.getProbandSampleName(), equalTo(probandSampleName)); + } + @Test public void should_produce_settings_with_a_priority_class() { String input = "-v 123.vcf --prioritiser=phive"; @@ -270,23 +291,23 @@ public void should_produce_settings_with_genetic_interval_when_set() { } @Test - public void shouldProduceSettingsWithRemovePathFilterCutOffDefaultAsTrueWhenSet() { + public void shouldProduceSettingsWithKeepNonPathogenicVariantsDefaultAsTrueWhenSet() { String option = "keep-non-pathogenic"; String input = String.format("-v 123.vcf --%s --prioritiser=phive", option); System.out.println(input); Settings exomiserSettings = parseSettingsFromInput(input); - assertThat(exomiserSettings.removePathFilterCutOff(), equalTo(true)); + assertThat(exomiserSettings.keepNonPathogenicVariants(), equalTo(true)); } @Test - public void shouldProduceSettingsWithRemovePathFilterCutOffDefaultAsFalseWhenNotSet() { + public void shouldProduceSettingsWithKeepNonPathogenicVariantsDefaultAsFalseWhenNotSet() { String input = "-v 123.vcf --prioritiser=phive"; Settings exomiserSettings = parseSettingsFromInput(input); - assertThat(exomiserSettings.removePathFilterCutOff(), is(false)); + assertThat(exomiserSettings.keepNonPathogenicVariants(), is(false)); } @Test @@ -518,18 +539,16 @@ public void should_produce_settings_with_UNINITIALIZED_inheritance_mode_when_not Settings exomiserSettings = parseSettingsFromInput(input); - assertThat(exomiserSettings.getModeOfInheritance(), equalTo(ModeOfInheritance.UNINITIALIZED)); + assertThat(exomiserSettings.getModeOfInheritance(), equalTo(ModeOfInheritance.ANY)); } - @Test - public void should_produce_settings_with_UNINITIALIZED_inheritance_mode_when_value_not_recognised() { + @Test(expected = CommandLineParseError.class) + public void throwsExceptionWhenInheritanceModeValueNotRecognised() { String option = "--inheritance-mode"; String value = "wibble"; String input = String.format("-v 123.vcf %s %s --prioritiser=phive", option, value); Settings exomiserSettings = parseSettingsFromInput(input); - - assertThat(exomiserSettings.getModeOfInheritance(), equalTo(ModeOfInheritance.UNINITIALIZED)); } @Test diff --git a/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/config/CommandLineOptionsConfigTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/config/CommandLineOptionsConfigTest.java new file mode 100644 index 000000000..71ec5c358 --- /dev/null +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/config/CommandLineOptionsConfigTest.java @@ -0,0 +1,129 @@ +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.cli.config; + +import org.apache.commons.cli.Option; +import org.apache.commons.cli.Options; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.cli.options.*; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringRunner; + +import javax.annotation.Resource; +import java.util.HashMap; +import java.util.Map; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * Tests for the command line options. + * + * @author Jules Jacobsen + */ +@RunWith(SpringRunner.class) +@ContextConfiguration(classes = CommandLineOptionsConfig.class) +public class CommandLineOptionsConfigTest { + + @Autowired + private Options options; + + @Resource + private Map optionMarshallers; + + private void isCorrectlyConfiguredAndHasOption(OptionMarshaller expected) { + String commandLineParameter = expected.getCommandLineParameter(); + + OptionMarshaller optionMarshaller = optionMarshallers.get(commandLineParameter); + assertThat(optionMarshallers.containsKey(commandLineParameter), is(true)); + assertThat(expected, equalTo(optionMarshaller)); + + Option option = options.getOption(commandLineParameter); + assertThat(option.getLongOpt(), equalTo(commandLineParameter)); + } + + @Test + public void testContainsOptions() { + Map expectedOptions = new HashMap<>(); + + expectedOptions.put("settings-file", new SettingsFileOptionMarshaller()); + expectedOptions.put("batch-file", new BatchFileOptionMarshaller()); + + //sample data files + expectedOptions.put("vcf", new VcfFileOptionMarshaller()); + expectedOptions.put("ped", new PedFileOptionMarshaller()); + expectedOptions.put("proband", new ProbandSampleNameOptionMarshaller()); + + //analysis options + expectedOptions.put("hpo-ids", new HpoIdsOptionMarshaller()); + expectedOptions.put("inheritance-mode", new InheritanceModeOptionMarshaller()); + expectedOptions.put("full-analysis", new FullAnalysisOptionMarshaller()); + + //filter options + expectedOptions.put("remove-failed", new FailedVariantFilterOptionMarshaller()); + expectedOptions.put("max-freq", new FrequencyThresholdOptionMarshaller()); + expectedOptions.put("remove-known-variants", new FrequencyKnownVariantOptionMarshaller()); + expectedOptions.put("restrict-interval", new GeneticIntervalOptionMarshaller()); + expectedOptions.put("min-qual", new QualityThresholdOptionMarshaller()); + expectedOptions.put("keep-non-pathogenic", new PathogenicityFilterCutOffOptionMarshaller()); + expectedOptions.put("keep-off-target", new TargetFilterOptionMarshaller()); + expectedOptions.put("genes-to-keep", new GenesToKeepFilterOptionMarshaller()); + + //prioritiser options + expectedOptions.put("prioritiser", new PrioritiserOptionMarshaller()); + expectedOptions.put("seed-genes", new SeedGenesOptionMarshaller()); + expectedOptions.put("disease-id", new DiseaseIdOptionMarshaller()); + expectedOptions.put("candidate-gene", new CandidateGeneOptionMarshaller()); + expectedOptions.put("hiphive-params", new HiPhiveOptionMarshaller()); + + //output options + expectedOptions.put("output-pass-variants-only", new OutputPassOnlyVariantsOptionMarshaller()); + expectedOptions.put("num-genes", new NumGenesOptionMarshaller()); + expectedOptions.put("out-prefix", new OutFilePrefixOptionMarshaller()); + expectedOptions.put("out-format", new OutFileFormatOptionMarshaller()); + + assertThat(optionMarshallers, equalTo(expectedOptions)); + } + + @Test + public void seedGenesOptionsCanHaveMultipleCommaSeparatedValues() { + OptionMarshaller optionMarshaller = new SeedGenesOptionMarshaller(); + + Option option = optionMarshaller.getOption(); + assertThat(option.hasArgs(), is(true)); + assertThat(option.getValueSeparator(), equalTo(',')); + } + + @Test + public void hpoIdsOptionsCanHaveMultipleCommaSeparatedValues() { + OptionMarshaller optionMarshaller = new HpoIdsOptionMarshaller(); + + Option option = optionMarshaller.getOption(); + assertThat(option.hasArgs(), is(true)); + assertThat(option.getValueSeparator(), equalTo(',')); + } + + @Test + public void containsInheritanceModeOptionAndTakesArgs() { + OptionMarshaller optionMarshaller = new InheritanceModeOptionMarshaller(); + + Option option = optionMarshaller.getOption(); + assertThat(option.hasArg(), is(true)); + } + + @Test + public void containsFullAnalysisOptionMarshallerAndTakesArgs() { + OptionMarshaller optionMarshaller = new FullAnalysisOptionMarshaller(); + + Option option = optionMarshaller.getOption(); + assertThat(option.hasArg(), is(true)); + } + +} diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/DiseaseIdOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/DiseaseIdOptionMarshallerTest.java similarity index 85% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/DiseaseIdOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/DiseaseIdOptionMarshallerTest.java index cf2d64b94..00fa34922 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/DiseaseIdOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/DiseaseIdOptionMarshallerTest.java @@ -3,19 +3,19 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import java.nio.file.Paths; import org.apache.commons.cli.Option; -import org.hamcrest.CoreMatchers; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +import java.nio.file.Paths; + import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; /** * @@ -31,7 +31,7 @@ public class DiseaseIdOptionMarshallerTest { public void setUp() { instance = new DiseaseIdOptionMarshaller(); option = instance.getOption(); - settingsBuilder = new Settings.SettingsBuilder(); + settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(Paths.get("test.vcf")); } diff --git a/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/FailedVariantFilterOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/FailedVariantFilterOptionMarshallerTest.java new file mode 100644 index 000000000..d154fa489 --- /dev/null +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/FailedVariantFilterOptionMarshallerTest.java @@ -0,0 +1,71 @@ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class FailedVariantFilterOptionMarshallerTest { + + private FailedVariantFilterOptionMarshaller instance; + private Option option; + private Settings.SettingsBuilder settingsBuilder; + + @Before + public void setUp() { + instance = new FailedVariantFilterOptionMarshaller(); + option = instance.getOption(); + settingsBuilder = Settings.builder(); + settingsBuilder.vcfFilePath(Paths.get("test.vcf")); + settingsBuilder.usePrioritiser(PriorityType.OMIM_PRIORITY); + } + + @Test + public void testOptionCommandLineParameter() { + assertThat(instance.getCommandLineParameter(), equalTo("remove-failed")); + } + + @Test + public void testThatOptionHasNoOptionalArgument() { + assertThat(option.hasOptionalArg(), is(false)); + } + + @Test + public void testSettingsRemoveFailedVariantsIsFalseByDefault() { + Settings settings = settingsBuilder.build(); + assertThat(settings.removeFailedVariants(), is(false)); + } + + @Test + public void testSettingsBuilderAlwaysAppliesTrueWhenSetWithNullValue() { + instance.applyValuesToSettingsBuilder(null, settingsBuilder); + Settings settings = settingsBuilder.build(); + assertThat(settings.removeFailedVariants(), is(true)); + } + + @Test + public void testSettingsBuilderAlwaysAppliesTrueArgFalse() { + String[] args = {"false"}; + instance.applyValuesToSettingsBuilder(args, settingsBuilder); + Settings settings = settingsBuilder.build(); + assertThat(settings.removeFailedVariants(), is(true)); + } + + @Test + public void testSettingsBuilderAlwaysAppliesTrueArgTrue() { + String[] args = {"true"}; + instance.applyValuesToSettingsBuilder(args, settingsBuilder); + Settings settings = settingsBuilder.build(); + assertThat(settings.removeFailedVariants(), is(true)); + } +} \ No newline at end of file diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/FrequencyKnownVariantOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/FrequencyKnownVariantOptionMarshallerTest.java similarity index 89% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/FrequencyKnownVariantOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/FrequencyKnownVariantOptionMarshallerTest.java index da8d9f604..9181f20bb 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/FrequencyKnownVariantOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/FrequencyKnownVariantOptionMarshallerTest.java @@ -3,17 +3,19 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import java.nio.file.Paths; import org.apache.commons.cli.Option; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; import org.junit.Before; import org.junit.Test; -import static org.junit.Assert.*; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; /** * @@ -29,7 +31,7 @@ public class FrequencyKnownVariantOptionMarshallerTest { public void setUp() { instance = new FrequencyKnownVariantOptionMarshaller(); option = instance.getOption(); - settingsBuilder = new Settings.SettingsBuilder(); + settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(Paths.get("test.vcf")); settingsBuilder.usePrioritiser(PriorityType.OMIM_PRIORITY); } diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/HiPhiveOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/HiPhiveOptionMarshallerTest.java similarity index 76% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/HiPhiveOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/HiPhiveOptionMarshallerTest.java index a9782036c..7e10a3530 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/HiPhiveOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/HiPhiveOptionMarshallerTest.java @@ -3,15 +3,16 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; -import de.charite.compbio.exomiser.core.analysis.Settings; import org.apache.commons.cli.Option; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; import org.junit.Before; import org.junit.Test; -import static org.junit.Assert.*; +import org.monarchinitiative.exomiser.core.analysis.Settings; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; /** * @@ -42,22 +43,22 @@ public void testThatOptionAcceptsMultipleValues() { public void testApplyValuesToSettingsBuilder() { String[] values = {"human","mouse","ppi"}; - Settings.SettingsBuilder settingsBuilder = new Settings.SettingsBuilder(); + Settings.SettingsBuilder settingsBuilder = Settings.builder(); instance.applyValuesToSettingsBuilder(values, settingsBuilder); Settings settings = settingsBuilder.build(); - assertThat(settings.getExomiser2Params(), equalTo("human,mouse,ppi")); + assertThat(settings.getHiPhiveParams(), equalTo("human,mouse,ppi")); } @Test public void testApplyValuesToSettingsBuilderWithNoInput() { String[] values = {}; - Settings.SettingsBuilder settingsBuilder = new Settings.SettingsBuilder(); + Settings.SettingsBuilder settingsBuilder = Settings.builder(); instance.applyValuesToSettingsBuilder(values, settingsBuilder); Settings settings = settingsBuilder.build(); - assertThat(settings.getExomiser2Params(), equalTo("")); + assertThat(settings.getHiPhiveParams(), equalTo("")); } } diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutFileFormatOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutFileFormatOptionMarshallerTest.java similarity index 91% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutFileFormatOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutFileFormatOptionMarshallerTest.java index 8d415578d..6b46816f1 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutFileFormatOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutFileFormatOptionMarshallerTest.java @@ -3,19 +3,21 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.writers.OutputFormat; import java.nio.file.Paths; import java.util.EnumSet; import java.util.Set; -import org.apache.commons.cli.Option; + import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; +import static org.junit.Assert.assertThat; /** * @@ -35,7 +37,7 @@ public class OutFileFormatOptionMarshallerTest { public void setUp() { instance = new OutFileFormatOptionMarshaller(); option = instance.getOption(); - settingsBuilder = new Settings.SettingsBuilder(); + settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(Paths.get("user/analysis/vcf/test.vcf")); } diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutFilePrefixOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutFilePrefixOptionMarshallerTest.java similarity index 87% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutFilePrefixOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutFilePrefixOptionMarshallerTest.java index ea9908962..b6682c99d 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutFilePrefixOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutFilePrefixOptionMarshallerTest.java @@ -3,17 +3,19 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import java.nio.file.Paths; import org.apache.commons.cli.Option; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; import org.junit.Before; import org.junit.Test; -import static org.junit.Assert.*; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; + +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; /** * @@ -33,7 +35,7 @@ public class OutFilePrefixOptionMarshallerTest { public void setUp() { instance = new OutFilePrefixOptionMarshaller(); option = instance.getOption(); - settingsBuilder = new Settings.SettingsBuilder(); + settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(Paths.get("user/analysis/vcf/test.vcf")); } diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshallerTest.java similarity index 91% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshallerTest.java index 77e319112..bdbe6f402 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/OutputPassOnlyVariantsOptionMarshallerTest.java @@ -3,16 +3,18 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; -import de.charite.compbio.exomiser.core.analysis.Settings; -import java.nio.file.Paths; import org.apache.commons.cli.Option; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; import org.junit.Before; import org.junit.Test; -import static org.junit.Assert.*; +import org.monarchinitiative.exomiser.core.analysis.Settings; + +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; /** * @@ -28,7 +30,7 @@ public class OutputPassOnlyVariantsOptionMarshallerTest { public void setUp() { instance = new OutputPassOnlyVariantsOptionMarshaller(); option = instance.getOption(); - settingsBuilder = new Settings.SettingsBuilder(); + settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(Paths.get("test.vcf")); } diff --git a/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshallerTest.java new file mode 100644 index 000000000..31af36fa2 --- /dev/null +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/PathogenicityFilterCutOffOptionMarshallerTest.java @@ -0,0 +1,101 @@ +/* + * The Exomiser - A tool to annotate and prioritize variants + * + * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PathogenicityFilterCutOffOptionMarshallerTest { + + private PathogenicityFilterCutOffOptionMarshaller instance; + private Option option; + private SettingsBuilder settingsBuilder; + + @Before + public void setUp() { + instance = new PathogenicityFilterCutOffOptionMarshaller(); + option = instance.getOption(); + settingsBuilder = Settings.builder(); + settingsBuilder.vcfFilePath(Paths.get("test.vcf")); + settingsBuilder.usePrioritiser(PriorityType.OMIM_PRIORITY); + } + + @Test + public void testOptionCommandLineParameter() { + assertThat(instance.getCommandLineParameter(), equalTo("keep-non-pathogenic")); + } + + @Test + public void testThatOptionHasOptionalArgument() { + assertThat(option.hasOptionalArg(), is(true)); + } + + @Test + public void testSettingsRemovePathFilterCutOffIsFalseByDefault() { + Settings settings = settingsBuilder.build(); + assertThat(settings.keepNonPathogenicVariants(), is(false)); + } + + @Test + public void testSettingsBuilderAppliesTrueWhenSetWithNullValue() { + instance.applyValuesToSettingsBuilder(null, settingsBuilder); + Settings settings = settingsBuilder.build(); + + assertThat(settings.keepNonPathogenicVariants(), is(true)); + } + + @Test + public void testSettingsBuilderAppliesArgFalse() { + String[] args = {"false"}; + instance.applyValuesToSettingsBuilder(args, settingsBuilder); + Settings settings = settingsBuilder.build(); + + assertThat(settings.keepNonPathogenicVariants(), is(false)); + } + + @Test + public void testSettingsBuilderAppliesArgTrue() { + String[] args = {"true"}; + instance.applyValuesToSettingsBuilder(args, settingsBuilder); + Settings settings = settingsBuilder.build(); + + assertThat(settings.keepNonPathogenicVariants(), is(true)); + } + +} diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/PrioritiserOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/PrioritiserOptionMarshallerTest.java similarity index 85% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/PrioritiserOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/PrioritiserOptionMarshallerTest.java index 7a2fcf133..7ae5bf8e6 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/PrioritiserOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/PrioritiserOptionMarshallerTest.java @@ -22,19 +22,18 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; -import de.charite.compbio.exomiser.cli.CommandLineParseError; -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.cli.CommandLineParseError; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; import static org.hamcrest.CoreMatchers.containsString; import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; +import static org.junit.Assert.assertThat; /** * @@ -48,7 +47,7 @@ public class PrioritiserOptionMarshallerTest { @Before public void setUp() { instance = new PrioritiserOptionMarshaller(); - settingsBuilder = new SettingsBuilder(); + settingsBuilder = Settings.builder(); } private Settings applyValueAndBuildSettings(String arg) { @@ -105,13 +104,7 @@ public void testApplyValuesToSettingsBuilder_omim() { Settings settings = applyValueAndBuildSettings("omim"); assertThat(settings.getPrioritiserType(), equalTo(PriorityType.OMIM_PRIORITY)); } - - @Test - public void testApplyValuesToSettingsBuilder_uberPheno() { - Settings settings = applyValueAndBuildSettings("uber-pheno"); - assertThat(settings.getPrioritiserType(), equalTo(PriorityType.UBERPHENO_PRIORITY)); - } - + @Test public void testApplyValuesToSettingsBuilder_none() { Settings settings = applyValueAndBuildSettings("none"); @@ -127,7 +120,7 @@ public void testDescriptionContainsPrioritiserNames() { assertThat(description, containsString("phive")); assertThat(description, containsString("exomewalker")); assertThat(description, containsString("omim")); - assertThat(description, containsString("uber-pheno")); assertThat(description, containsString("none")); } + } diff --git a/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/ProbandSampleNameOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/ProbandSampleNameOptionMarshallerTest.java new file mode 100644 index 000000000..34eaa3c5c --- /dev/null +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/ProbandSampleNameOptionMarshallerTest.java @@ -0,0 +1,40 @@ +package org.monarchinitiative.exomiser.cli.options; + +import org.apache.commons.cli.Option; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Settings; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class ProbandSampleNameOptionMarshallerTest { + + ProbandSampleNameOptionMarshaller instance = new ProbandSampleNameOptionMarshaller(); + + @Test + public void testGetCommandLineParameter() { + assertThat(instance.getCommandLineParameter(), equalTo("proband")); + } + + @Test + public void testOptionTakesAnArgument() { + Option option = instance.getOption(); + assertThat(option.hasArg(), is(true)); + } + + @Test + public void testApplyValuesToSettingsBuilderSetsVcfValue() { + String probandSampleName = "AGENT-47"; + String[] values = {probandSampleName}; + + Settings.SettingsBuilder settingsBuilder = Settings.builder(); + instance.applyValuesToSettingsBuilder(values, settingsBuilder); + Settings settings = settingsBuilder.build(); + + assertThat(settings.getProbandSampleName(), equalTo(probandSampleName)); + } +} diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/TargetFilterOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/TargetFilterOptionMarshallerTest.java similarity index 89% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/TargetFilterOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/TargetFilterOptionMarshallerTest.java index 767b96f1d..53fbc2528 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/TargetFilterOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/TargetFilterOptionMarshallerTest.java @@ -3,17 +3,19 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; -import de.charite.compbio.exomiser.core.analysis.Settings; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import java.nio.file.Paths; import org.apache.commons.cli.Option; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; import org.junit.Before; import org.junit.Test; -import static org.junit.Assert.*; +import org.monarchinitiative.exomiser.core.analysis.Settings; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; /** * @@ -29,7 +31,7 @@ public class TargetFilterOptionMarshallerTest { public void setUp() { instance = new TargetFilterOptionMarshaller(); option = instance.getOption(); - settingsBuilder = new Settings.SettingsBuilder(); + settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(Paths.get("test.vcf")); settingsBuilder.usePrioritiser(PriorityType.OMIM_PRIORITY); } diff --git a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/VcfFileOptionMarshallerTest.java b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/VcfFileOptionMarshallerTest.java similarity index 80% rename from exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/VcfFileOptionMarshallerTest.java rename to exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/VcfFileOptionMarshallerTest.java index 1ae86f7bd..20024a0a3 100644 --- a/exomiser-cli/src/test/java/de/charite/compbio/exomiser/cli/options/VcfFileOptionMarshallerTest.java +++ b/exomiser-cli/src/test/java/org/monarchinitiative/exomiser/cli/options/VcfFileOptionMarshallerTest.java @@ -3,18 +3,18 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.cli.options; +package org.monarchinitiative.exomiser.cli.options; -import de.charite.compbio.exomiser.core.analysis.Settings; -import java.nio.file.Paths; import org.apache.commons.cli.Option; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.notNullValue; -import static org.hamcrest.CoreMatchers.nullValue; import org.junit.Before; import org.junit.Test; -import static org.junit.Assert.*; +import org.monarchinitiative.exomiser.core.analysis.Settings; + +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; /** * @@ -48,7 +48,7 @@ public void testApplyValuesToSettingsBuilderSetsVcfValue() { String vcfFileName = "123.vcf"; String[] values = {vcfFileName}; - Settings.SettingsBuilder settingsBuilder = new Settings.SettingsBuilder(); + Settings.SettingsBuilder settingsBuilder = Settings.builder(); instance.applyValuesToSettingsBuilder(values, settingsBuilder); Settings settings = settingsBuilder.build(); diff --git a/exomiser-cli/src/test/resources/application.properties b/exomiser-cli/src/test/resources/application.properties new file mode 100644 index 000000000..724750dcd --- /dev/null +++ b/exomiser-cli/src/test/resources/application.properties @@ -0,0 +1,48 @@ +# +# The Exomiser - A tool to annotate and prioritize variants +# +# Copyright (C) 2012 - 2016 Charite Universittsmedizin Berlin and Genome Research Ltd. +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see . +# + +#root path where data is to be downloaded and worked on +#it is assumed that all the files required by exomiser listed in this properties file +#will be found in the dataDir directory unless specifically overridden here. +exomiser.data-directory=data + +#Full path to the directory containing the exomiser H2 database file (leave blank to use the default location) +#exomiser.h2.directory= +#Name of the transcript data file you want to use - e.g hg19_ucsc or hg19_ensembl. +#This should be located in the ${exomiser.data-directory}. +#exomiser.transcript-data-file-name=hg19_ucsc.ser + +#location of CADD/REMM Tabix files - you will need these for analysis of non-coding variants. +#CADD can be downloaded from http://cadd.gs.washington.edu/download - v1.3 has been tested. +#REMM can be downloaded from ftp://ftp.sanger.ac.uk/pub/resources/software/exomiser/downloads/exomiser/remm +#local frequencies are required to be normalised in the same manner as the input VCF. +# +#You will require the tsv.gz and tsv.gz.tbi (tabix) file pairs. +#Un-comment and add the full path to the relevant tsv.gz files if you want to enable these. +#exomiser.cadd-snv-path=full/path/to/whole_genome_SNVs.tsv.gz +#exomiser.cadd-in-del-path=full/path/to/InDels.tsv.gz +#exomiser.remm-path=full/path/to/remmData.tsv.gz +#exomiser.local-frequency-path=full/path/to/local-frequencies.tsv.gz + +#If you're running exomiser in batch mode there might be some performance benefit +#if you enable caching. The mem option will continue to store data in memory *without* +#limit - this means for really long-running batch jobs and/or whole genomes you may run out of memory. +#If this is likely choose the ehcache option and configure ehcache.xml to your requirements +#none/mem/ehcache +#exomiser.cache=ehcache \ No newline at end of file diff --git a/exomiser-core/.mvn/wrapper/maven-wrapper.jar b/exomiser-core/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-core/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-core/.mvn/wrapper/maven-wrapper.properties b/exomiser-core/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/exomiser-core/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/exomiser-core/CHANGELOG.md b/exomiser-core/CHANGELOG.md index b63542756..e50af5f33 100644 --- a/exomiser-core/CHANGELOG.md +++ b/exomiser-core/CHANGELOG.md @@ -1,5 +1,29 @@ # The Exomiser - Core Library Changelog +## 8.0.0 2017-08-08 +In addition to the user-facing changes listed on the cli, the core has received extensive refactoring and changes. +- Namespace changed from ```de.charite.compbio``` to ```org.monarchinitiative```. +- Package layout has been changed to be more modular. New packages include ```genome``` and ```phenotype```. +- ```phenotype``` package is independent of the others and contains the new ```PhenodigmModelScorer```. +- Many classes are now immutable value objects, for example the ```Frequency```, ```FrequencyData``` and ```RsId``` classes. These use static ```of()``` constructors. +- Builders are now used extensively and are exposed using the static ```Class.builder()``` method. +- Prioritisers have been extensively refactored and test coverage has been much improved from zero. +- ```Prioritiser``` interface signature change. +- ```Exomiser``` class now has static ```getAnalysisBuilder()``` exposing a fluent API for building and running an analysis. +- New ```GeneSymbol``` class for storing mappings between HGNC and the UCSC/ENSEMBL/REFSEQ gene identifiers. +- New ```TranscriptAnnotation``` class for storing transcript annotations. This provides a much-improved memory footprint. +- New ```AllelePosition``` class for storing POS, REF and ALT and also providing basic variant normalisation/trimming. +- New ```TabixDataSource``` interface to abstract the ```TabixReader``` allowing simpler testing and other benefits. + +## 7.2.3 2016-11-02 +- Partial bug-fix for multi-sample VCF files where the proband sample is not the first sample in the genotypes section leading to occasional scores of 0 for the exomiser_gene_variant_score in cases where the variants are heterozygous and consistent with autosomal recessive. + +*IMPORTANT!* As a workaround for this issue ensure the proband sample is the first sample in the VCF file. This will be properly fixed in the next major release. + +## 7.2.2 2016-07-01 +- Fix for issue when using OmimPrioritiser with UNDEFINED inheritance mode which led to gene phenotype scores being halved. +- Fix for VCF output multiple allele line duplications. VCF output will now have alternate alleles written out on the same line if they were originally like that in the input VCF. The variant scores will be concatenated to correspond with the alleles. VCFs containing alleles split onto seperate lines in the input file will continue to have them like this in the output file. + ## 7.2.1 2016-01-05 - Fix for incorrect inheritance mode calculations where the variant chromosome number is prefixed with 'chr' in VCF file. diff --git a/exomiser-core/mvnw b/exomiser-core/mvnw new file mode 100644 index 000000000..5bf251c07 --- /dev/null +++ b/exomiser-core/mvnw @@ -0,0 +1,225 @@ +#!/bin/sh +# ---------------------------------------------------------------------------- +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +# ---------------------------------------------------------------------------- + +# ---------------------------------------------------------------------------- +# Maven2 Start Up Batch script +# +# Required ENV vars: +# ------------------ +# JAVA_HOME - location of a JDK home dir +# +# Optional ENV vars +# ----------------- +# M2_HOME - location of maven2's installed home dir +# MAVEN_OPTS - parameters passed to the Java VM when running Maven +# e.g. to debug Maven itself, use +# set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +# MAVEN_SKIP_RC - flag to disable loading of mavenrc files +# ---------------------------------------------------------------------------- + +if [ -z "$MAVEN_SKIP_RC" ] ; then + + if [ -f /etc/mavenrc ] ; then + . /etc/mavenrc + fi + + if [ -f "$HOME/.mavenrc" ] ; then + . "$HOME/.mavenrc" + fi + +fi + +# OS specific support. $var _must_ be set to either true or false. +cygwin=false; +darwin=false; +mingw=false +case "`uname`" in + CYGWIN*) cygwin=true ;; + MINGW*) mingw=true;; + Darwin*) darwin=true + # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home + # See https://developer.apple.com/library/mac/qa/qa1170/_index.html + if [ -z "$JAVA_HOME" ]; then + if [ -x "/usr/libexec/java_home" ]; then + export JAVA_HOME="`/usr/libexec/java_home`" + else + export JAVA_HOME="/Library/Java/Home" + fi + fi + ;; +esac + +if [ -z "$JAVA_HOME" ] ; then + if [ -r /etc/gentoo-release ] ; then + JAVA_HOME=`java-config --jre-home` + fi +fi + +if [ -z "$M2_HOME" ] ; then + ## resolve links - $0 may be a link to maven's home + PRG="$0" + + # need this for relative symlinks + while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG="`dirname "$PRG"`/$link" + fi + done + + saveddir=`pwd` + + M2_HOME=`dirname "$PRG"`/.. + + # make it fully qualified + M2_HOME=`cd "$M2_HOME" && pwd` + + cd "$saveddir" + # echo Using m2 at $M2_HOME +fi + +# For Cygwin, ensure paths are in UNIX format before anything is touched +if $cygwin ; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --unix "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --unix "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --unix "$CLASSPATH"` +fi + +# For Migwn, ensure paths are in UNIX format before anything is touched +if $mingw ; then + [ -n "$M2_HOME" ] && + M2_HOME="`(cd "$M2_HOME"; pwd)`" + [ -n "$JAVA_HOME" ] && + JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`" + # TODO classpath? +fi + +if [ -z "$JAVA_HOME" ]; then + javaExecutable="`which javac`" + if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then + # readlink(1) is not available as standard on Solaris 10. + readLink=`which readlink` + if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then + if $darwin ; then + javaHome="`dirname \"$javaExecutable\"`" + javaExecutable="`cd \"$javaHome\" && pwd -P`/javac" + else + javaExecutable="`readlink -f \"$javaExecutable\"`" + fi + javaHome="`dirname \"$javaExecutable\"`" + javaHome=`expr "$javaHome" : '\(.*\)/bin'` + JAVA_HOME="$javaHome" + export JAVA_HOME + fi + fi +fi + +if [ -z "$JAVACMD" ] ; then + if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + else + JAVACMD="`which java`" + fi +fi + +if [ ! -x "$JAVACMD" ] ; then + echo "Error: JAVA_HOME is not defined correctly." >&2 + echo " We cannot execute $JAVACMD" >&2 + exit 1 +fi + +if [ -z "$JAVA_HOME" ] ; then + echo "Warning: JAVA_HOME environment variable is not set." +fi + +CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher + +# traverses directory structure from process work directory to filesystem root +# first directory with .mvn subdirectory is considered project base directory +find_maven_basedir() { + + if [ -z "$1" ] + then + echo "Path not specified to find_maven_basedir" + return 1 + fi + + basedir="$1" + wdir="$1" + while [ "$wdir" != '/' ] ; do + if [ -d "$wdir"/.mvn ] ; then + basedir=$wdir + break + fi + # workaround for JBEAP-8937 (on Solaris 10/Sparc) + if [ -d "${wdir}" ]; then + wdir=`cd "$wdir/.."; pwd` + fi + # end of workaround + done + echo "${basedir}" +} + +# concatenates all lines of a file +concat_lines() { + if [ -f "$1" ]; then + echo "$(tr -s '\n' ' ' < "$1")" + fi +} + +BASE_DIR=`find_maven_basedir "$(pwd)"` +if [ -z "$BASE_DIR" ]; then + exit 1; +fi + +export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"} +echo $MAVEN_PROJECTBASEDIR +MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS" + +# For Cygwin, switch paths to Windows format before running java +if $cygwin; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --path --windows "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --windows "$CLASSPATH"` + [ -n "$MAVEN_PROJECTBASEDIR" ] && + MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"` +fi + +WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +exec "$JAVACMD" \ + $MAVEN_OPTS \ + -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \ + "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \ + ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@" diff --git a/exomiser-core/mvnw.cmd b/exomiser-core/mvnw.cmd new file mode 100644 index 000000000..019bd74d7 --- /dev/null +++ b/exomiser-core/mvnw.cmd @@ -0,0 +1,143 @@ +@REM ---------------------------------------------------------------------------- +@REM Licensed to the Apache Software Foundation (ASF) under one +@REM or more contributor license agreements. See the NOTICE file +@REM distributed with this work for additional information +@REM regarding copyright ownership. The ASF licenses this file +@REM to you under the Apache License, Version 2.0 (the +@REM "License"); you may not use this file except in compliance +@REM with the License. You may obtain a copy of the License at +@REM +@REM http://www.apache.org/licenses/LICENSE-2.0 +@REM +@REM Unless required by applicable law or agreed to in writing, +@REM software distributed under the License is distributed on an +@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +@REM KIND, either express or implied. See the License for the +@REM specific language governing permissions and limitations +@REM under the License. +@REM ---------------------------------------------------------------------------- + +@REM ---------------------------------------------------------------------------- +@REM Maven2 Start Up Batch script +@REM +@REM Required ENV vars: +@REM JAVA_HOME - location of a JDK home dir +@REM +@REM Optional ENV vars +@REM M2_HOME - location of maven2's installed home dir +@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands +@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a key stroke before ending +@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven +@REM e.g. to debug Maven itself, use +@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files +@REM ---------------------------------------------------------------------------- + +@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on' +@echo off +@REM enable echoing my setting MAVEN_BATCH_ECHO to 'on' +@if "%MAVEN_BATCH_ECHO%" == "on" echo %MAVEN_BATCH_ECHO% + +@REM set %HOME% to equivalent of $HOME +if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%") + +@REM Execute a user defined script before this one +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre +@REM check for pre script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat" +if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd" +:skipRcPre + +@setlocal + +set ERROR_CODE=0 + +@REM To isolate internal variables from possible post scripts, we use another setlocal +@setlocal + +@REM ==== START VALIDATION ==== +if not "%JAVA_HOME%" == "" goto OkJHome + +echo. +echo Error: JAVA_HOME not found in your environment. >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +:OkJHome +if exist "%JAVA_HOME%\bin\java.exe" goto init + +echo. +echo Error: JAVA_HOME is set to an invalid directory. >&2 +echo JAVA_HOME = "%JAVA_HOME%" >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +@REM ==== END VALIDATION ==== + +:init + +@REM Find the project base dir, i.e. the directory that contains the folder ".mvn". +@REM Fallback to current working directory if not found. + +set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR% +IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir + +set EXEC_DIR=%CD% +set WDIR=%EXEC_DIR% +:findBaseDir +IF EXIST "%WDIR%"\.mvn goto baseDirFound +cd .. +IF "%WDIR%"=="%CD%" goto baseDirNotFound +set WDIR=%CD% +goto findBaseDir + +:baseDirFound +set MAVEN_PROJECTBASEDIR=%WDIR% +cd "%EXEC_DIR%" +goto endDetectBaseDir + +:baseDirNotFound +set MAVEN_PROJECTBASEDIR=%EXEC_DIR% +cd "%EXEC_DIR%" + +:endDetectBaseDir + +IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig + +@setlocal EnableExtensions EnableDelayedExpansion +for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a +@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS% + +:endReadAdditionalConfig + +SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe" + +set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar" +set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %* +if ERRORLEVEL 1 goto error +goto end + +:error +set ERROR_CODE=1 + +:end +@endlocal & set ERROR_CODE=%ERROR_CODE% + +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost +@REM check for post script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat" +if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd" +:skipRcPost + +@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on' +if "%MAVEN_BATCH_PAUSE%" == "on" pause + +if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE% + +exit /B %ERROR_CODE% diff --git a/exomiser-core/pom.xml b/exomiser-core/pom.xml index b851e04a9..07a1c58a3 100644 --- a/exomiser-core/pom.xml +++ b/exomiser-core/pom.xml @@ -26,11 +26,12 @@ exomiser-core - de.charite.compbio - Exomiser - 7.2.3 + org.monarchinitiative + exomiser + 8.0.0 - + + @@ -44,16 +45,13 @@ - - de.charite.compbio - jannovar-inheritance-checker - ${jannovar.version} - + org.jblas jblas 1.2.3 + de.sonumina javautil @@ -64,12 +62,28 @@ ontologizer 0.0.1-SNAPSHOT + + + + + + + + + + + + org.thymeleaf thymeleaf + + org.thymeleaf + thymeleaf-spring4 + org.jsoup @@ -94,6 +108,7 @@ com.fasterxml.jackson.datatype jackson-datatype-jdk7 + 2.6.7 commons-io @@ -116,12 +131,22 @@ logback-classic test + + org.hamcrest + hamcrest-library + test + org.codehaus.groovy groovy-all test + + org.mapdb + mapdb + 1.0.8 + diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/Exomiser.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/Exomiser.java deleted file mode 100644 index 4f12e1557..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/Exomiser.java +++ /dev/null @@ -1,43 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.AnalysisFactory; -import de.charite.compbio.exomiser.core.analysis.AnalysisMode; -import de.charite.compbio.exomiser.core.analysis.AnalysisRunner; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; - -/** - * This is the main entry point for analysing data using the Exomiser. An {@link analysis.Analysis} - * should be build using either a {@link analysis.Settings} and the - * {@link analysis.SettingsParser} or with an {@link analysis.AnalysisParser} - * - * @author Jules Jacobsen - */ -@Component -public class Exomiser { - - private static final Logger logger = LoggerFactory.getLogger(Exomiser.class); - - private final AnalysisFactory analysisFactory; - - @Autowired - public Exomiser(AnalysisFactory analysisFactory) { - this.analysisFactory = analysisFactory; - } - - public void run(Analysis analysis) { - AnalysisMode analysisMode = analysis.getAnalysisMode(); - logger.info("Running analysis with mode: {}", analysisMode); - AnalysisRunner runner = analysisFactory.getAnalysisRunnerForMode(analysisMode); - runner.runAnalysis(analysis); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AbstractAnalysisRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AbstractAnalysisRunner.java deleted file mode 100644 index f5c91914e..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AbstractAnalysisRunner.java +++ /dev/null @@ -1,358 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.analysis.util.*; -import de.charite.compbio.exomiser.core.factories.SampleDataFactory; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.factories.VariantFactory; -import de.charite.compbio.exomiser.core.filters.*; -import de.charite.compbio.exomiser.core.model.*; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.prioritisers.ScoringMode; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import de.charite.compbio.jannovar.pedigree.Pedigree; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.nio.file.Path; -import java.util.*; -import java.util.function.Function; -import java.util.function.Predicate; -import java.util.stream.Stream; - -import static java.util.stream.Collectors.toConcurrentMap; -import static java.util.stream.Collectors.toList; - -/** - * @author Jules Jacobsen - */ -public abstract class AbstractAnalysisRunner implements AnalysisRunner { - - private static final Logger logger = LoggerFactory.getLogger(AbstractAnalysisRunner.class); - - private final SampleDataFactory sampleDataFactory; - private final VariantDataService variantDataService; - protected final VariantFilterRunner variantFilterRunner; - private final GeneFilterRunner geneFilterRunner; - private ChromosomalRegionIndex regulatoryRegionIndex; - - public AbstractAnalysisRunner(SampleDataFactory sampleDataFactory, VariantDataService variantDataService, VariantFilterRunner variantFilterRunner, GeneFilterRunner geneFilterRunner) { - this.sampleDataFactory = sampleDataFactory; - this.variantDataService = variantDataService; - this.variantFilterRunner = variantFilterRunner; - this.geneFilterRunner = geneFilterRunner; - } - - @Override - public void runAnalysis(Analysis analysis) { - - final SampleData sampleData = makeSampleDataWithoutGenesOrVariants(analysis); - - logger.info("Running analysis on sample: {}", sampleData.getSampleNames()); - long startAnalysisTimeMillis = System.currentTimeMillis(); - - final Pedigree pedigree = sampleData.getPedigree(); - final Path vcfPath = analysis.getVcfPath(); - final List analysisSteps = analysis.getAnalysisSteps(); - //should this be optional for people really wanting to screw about with the steps at the risk of catastrophic failure? - //it's really an optimiser step of a compiler, so perhaps it should be in the AnalysisParser? - new AnalysisStepChecker().check(analysisSteps); - - //soo many comments - this is a bad sign that this is too complicated. - Map allGenes = makeKnownGenes(); - List variantEvaluations = new ArrayList<>(); -// some kind of multi-map with ordered duplicate keys would allow for easy grouping of steps for running the groups together. - List> analysisStepGroups = analysis.getAnalysisStepsGroupedByFunction(); - boolean variantsLoaded = false; - for (List analysisGroup : analysisStepGroups) { - //this is admittedly pretty confusing code and I'm sorry. It's easiest to follow if you turn on debugging. - //The analysis steps are run in groups of VARIANT_FILTER, GENE_ONLY_DEPENDENT or INHERITANCE_MODE_DEPENDENT - AnalysisStep firstStep = analysisGroup.get(0); - logger.debug("Running {} group: {}", firstStep.getType(), analysisGroup); - if (firstStep.isVariantFilter() & !variantsLoaded) { - //variants take up 99% of all the memory in an analysis - this scales approximately linearly with the sample size - //so for whole genomes this is best run as a stream to filter out the unwanted variants with as many filters as possible in one go - variantEvaluations = loadAndFilterVariants(vcfPath, allGenes, analysisGroup, analysis); - //this is done here as there are GeneFilter steps which may require Variants in the genes, or the InheritanceModeDependent steps which definitely need them... - assignVariantsToGenes(variantEvaluations, allGenes); - variantsLoaded = true; - } else { - runSteps(analysisGroup, new ArrayList<>(allGenes.values()), pedigree, analysis.getModeOfInheritance()); - } - } - //maybe only the non-variant dependent steps have been run in which case we need to load the variants although - //the results might be a bit meaningless. - if (!variantsLoaded) { - try(Stream variantStream = loadVariants(vcfPath)) { - variantEvaluations = variantStream.collect(toList()); - } - assignVariantsToGenes(variantEvaluations, allGenes); - } - - final List genes = getFinalGeneList(allGenes); - sampleData.setGenes(genes); - final List variants = getFinalVariantList(variantEvaluations); - sampleData.setVariantEvaluations(variants); - - scoreGenes(genes, analysis.getScoringMode(), analysis.getModeOfInheritance()); - logger.info("Analysed {} genes containing {} filtered variants", genes.size(), variants.size()); -// logTopNumScoringGenes(5, genes, analysis); - - long endAnalysisTimeMillis = System.currentTimeMillis(); - double analysisTimeSecs = (double) (endAnalysisTimeMillis - startAnalysisTimeMillis) / 1000; - logger.info("Finished analysis in {} secs", analysisTimeSecs); - } - - private List loadAndFilterVariants(Path vcfPath, Map allGenes, List analysisGroup, Analysis analysis) { - GeneReassigner geneReassigner = createNonCodingVariantGeneReassigner(analysis, allGenes); - List variantFilters = getVariantFilterSteps(analysisGroup); - - List filteredVariants; - final int[] streamed = {0}; - final int[] passed = {0}; - try (Stream variantStream = loadVariants(vcfPath)) { - filteredVariants = variantStream - .map(logLoadedAndPassedVariants(streamed, passed)) - .map(reassignNonCodingVariantToBestGeneInJannovarAnnotations(allGenes, geneReassigner)) - .map(reassignNonCodingVariantToBestGeneInTad(allGenes, geneReassigner)) - .filter(isAssociatedWithKnownGene(allGenes)) - .filter(runVariantFilters(variantFilters)) - .map(logPassedVariants(passed)) - .collect(toList()); - } - logger.info("Loaded {} variants - {} passed variant filters", streamed[0], passed[0]); - return filteredVariants; - } - - private GeneReassigner createNonCodingVariantGeneReassigner(Analysis analysis, Map allGenes) { - ChromosomalRegionIndex tadIndex = new ChromosomalRegionIndex<>(variantDataService.getTopologicallyAssociatedDomains()); - PriorityType mainPriorityType = analysis.getMainPrioritiserType(); - return new GeneReassigner(mainPriorityType, allGenes, tadIndex); - } - - private List getVariantFilterSteps(List analysisSteps) { - logger.info("Filtering variants with:"); - return analysisSteps.stream() - .filter(AnalysisStep::isVariantFilter) - .map(analysisStep -> { - logger.info("{}", analysisStep); - return (VariantFilter) analysisStep; - }) - .collect(toList()); - } - - //yep, logging logic - private Function logLoadedAndPassedVariants(int[] streamed, int[] passed) { - return variantEvaluation -> { - streamed[0]++; - if (streamed[0] % 100000 == 0) { - logger.info("Loaded {} variants - {} passed variant filters", streamed[0], passed[0]); - } - return variantEvaluation; - }; - } - - private Function reassignNonCodingVariantToBestGeneInTad(Map genes, GeneReassigner geneReassigner) { - //todo: this won't function correctly if run before a prioritiser has been run - return variantEvaluation -> { - geneReassigner.reassignVariantToMostPhenotypicallySimilarGeneInTad(variantEvaluation); - return variantEvaluation; - }; - } - - private Function reassignNonCodingVariantToBestGeneInJannovarAnnotations(Map genes, GeneReassigner geneReassigner) { - return variantEvaluation -> { - if (variantEvaluation.isNonCodingVariant()){ - geneReassigner.reassignGeneToMostPhenotypicallySimilarGeneInAnnotations(variantEvaluation); - } - return variantEvaluation; - }; - } - - /** - * Defines the filtering behaviour of the runner when performing the initial load and filter of variants. Allows the - * concrete runner to define whether a variant should pass or fail depending on the gene or status of the gene it is - * assigned to. - * - * @param genes - * @return - */ - abstract Predicate isAssociatedWithKnownGene(Map genes); - - /** - * Defines the filtering behaviour of the runner when performing the initial load and filter of variants. Allows the - * concrete runner to define whether a variant should pass or fail when running the variant through the variant - * filters defined in the variant filter group, or the initial group if there are more than one. - * - * @param variantFilters - * @return - */ - abstract Predicate runVariantFilters(List variantFilters); - - //more logging logic - private Function logPassedVariants(int[] passed) { - return variantEvaluation -> { - if (variantEvaluation.passedFilters()) { - passed[0]++; - } - return variantEvaluation; - }; - } - - private Stream loadVariants(Path vcfPath) { - VariantFactory variantFactory = sampleDataFactory.getVariantFactory(); - List regulatoryFeatures = variantDataService.getRegulatoryFeatures(); - this.regulatoryRegionIndex = new ChromosomalRegionIndex<>(regulatoryFeatures); - logger.info("Loaded {} regulatory regions", regulatoryFeatures.size()); - //WARNING!!! THIS IS NOT THREADSAFE DO NOT USE PARALLEL STREAMS - return variantFactory.streamVariantEvaluations(vcfPath).map(setRegulatoryRegionVariantEffect(regulatoryRegionIndex)); - } - - //Adds the missing REGULATORY_REGION_VARIANT effect to variants - this isn't in the Jannovar data set. - private Function setRegulatoryRegionVariantEffect(ChromosomalRegionIndex regulatoryRegionIndex) { - return variantEvaluation -> { - VariantEffect variantEffect = variantEvaluation.getVariantEffect(); - //n.b this check here is important as ENSEMBLE can have regulatory regions overlapping with missense variants. - if (variantEffect == VariantEffect.INTERGENIC_VARIANT || variantEffect == VariantEffect.UPSTREAM_GENE_VARIANT) { - List overlappingFeatures = regulatoryRegionIndex.getRegionsContainingVariant(variantEvaluation); - if (!overlappingFeatures.isEmpty()) { - //the effect is the same for all regulatory regions, so for the sake of speed, just assign it here rather than look it up form the list - variantEvaluation.setVariantEffect(VariantEffect.REGULATORY_REGION_VARIANT); - } - } - return variantEvaluation; - }; - } - - private SampleData makeSampleDataWithoutGenesOrVariants(Analysis analysis) { - final SampleData sampleData = sampleDataFactory.createSampleDataWithoutVariantsOrGenes(analysis.getVcfPath(), analysis.getPedPath()); - analysis.setSampleData(sampleData); - return sampleData; - } - - private void assignVariantsToGenes(List variantEvaluations, Map allGenes) { - for (VariantEvaluation variantEvaluation : variantEvaluations) { - Gene gene = allGenes.get(variantEvaluation.getGeneSymbol()); - gene.addVariant(variantEvaluation); - } - } - - /** - * @param allGenes - * @return - */ - protected List getFinalGeneList(Map allGenes) { - return allGenes.values() - .stream() - .filter(gene -> !gene.getVariantEvaluations().isEmpty()) - .collect(toList()); - } - - //TODO: make this abstract? we need the individual runners to define the behaviour - also check other protected methods. - protected List getFinalVariantList(List variants) { - return variants; - } - - /** - * @return a map of genes indexed by gene symbol. - */ - private Map makeKnownGenes() { - return sampleDataFactory.createKnownGenes() - .parallelStream() - .collect(toConcurrentMap(Gene::getGeneSymbol, gene -> gene)); - } - - //might this be a nascent class waiting to get out here? - private void runSteps(List analysisSteps, List genes, Pedigree pedigree, ModeOfInheritance modeOfInheritance) { - boolean inheritanceModesCalculated = false; - for (AnalysisStep analysisStep : analysisSteps) { - if (!inheritanceModesCalculated && analysisStep.isInheritanceModeDependent()) { - analyseGeneCompatibilityWithInheritanceMode(genes, pedigree, modeOfInheritance); - inheritanceModesCalculated = true; - } - runStep(analysisStep, genes); - } - } - - private void runStep(AnalysisStep analysisStep, List genes) { - if (analysisStep.isVariantFilter()) { - VariantFilter filter = (VariantFilter) analysisStep; - logger.info("Running VariantFilter: {}", filter); - for (Gene gene : genes) { - variantFilterRunner.run(filter, gene.getVariantEvaluations()); - } - return; - - } - if (GeneFilter.class.isInstance(analysisStep)) { - GeneFilter filter = (GeneFilter) analysisStep; - logger.info("Running GeneFilter: {}", filter); - geneFilterRunner.run(filter, genes); - return; - } - - if (Prioritiser.class.isInstance(analysisStep)) { - Prioritiser prioritiser = (Prioritiser) analysisStep; - logger.info("Running Prioritiser: {}", prioritiser); - prioritiser.prioritizeGenes(genes); - } - } - - private void analyseGeneCompatibilityWithInheritanceMode(List genes, Pedigree pedigree, ModeOfInheritance modeOfInheritance) { - InheritanceModeAnalyser inheritanceModeAnalyser = new InheritanceModeAnalyser(pedigree, modeOfInheritance); - logger.info("Checking compatibility with {} inheritance mode for genes which passed filters", modeOfInheritance); - inheritanceModeAnalyser.analyseInheritanceModes(genes); - } - - private void scoreGenes(List genes, ScoringMode scoreMode, ModeOfInheritance modeOfInheritance) { - logger.info("Scoring genes"); - GeneScorer geneScorer = getGeneScorer(scoreMode); - geneScorer.scoreGenes(genes, modeOfInheritance); - } - - private GeneScorer getGeneScorer(ScoringMode scoreMode) { - if (scoreMode == ScoringMode.RANK_BASED) { - return new RankBasedGeneScorer(); - } - return new RawScoreGeneScorer(); - } - - private void logTopNumScoringGenes(int numToLog, List genes, Analysis analysis) { - if (!genes.isEmpty()) { - List topScoringGenes = genes.stream().filter(Gene::passedFilters).limit(numToLog).collect(toList()); - if (topScoringGenes.isEmpty()) { - logger.info("No genes passed analysis :("); - return; - } - logger.info("Top {} scoring genes compatible with phenotypes {} were:", numToLog, analysis.getHpoIds()); - topScoringGenes.forEach(topScoringGene -> { - logger.info("{}", topScoringGene); - topScoringGene.getPassedVariantEvaluations().forEach(variant -> - logger.info("{} {}", variant.getGeneSymbol(), variant) - ); - }); - - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/Analysis.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/Analysis.java deleted file mode 100644 index e9ae0ed79..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/Analysis.java +++ /dev/null @@ -1,265 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis; - -import com.fasterxml.jackson.annotation.JsonIgnore; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.prioritisers.ScoringMode; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.EnumSet; -import java.util.List; -import java.util.Objects; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * This class is analogous to the {@link Settings} class, although the key difference is that here the {@see #addStep} - * - * @since 7.0.0 - * @author Jules Jacobsen - */ -public class Analysis { - - private static final Logger logger = LoggerFactory.getLogger(Analysis.class); - - //Store the path of the file used to create this data. - private Path vcfPath = null; - //there is often no pedigree. - private Path pedPath = null; - //SampleData is not final as it requires building from the VCF/PED files. - //This could happen at a separate time to the analysis initially being built. - @JsonIgnore - private SampleData sampleData = new SampleData(); - //these are more optional variables - private List hpoIds = new ArrayList<>(); - private ModeOfInheritance modeOfInheritance = ModeOfInheritance.UNINITIALIZED; - private ScoringMode scoringMode = ScoringMode.RAW_SCORE; - private AnalysisMode analysisMode = AnalysisMode.PASS_ONLY; - private Set frequencySources = EnumSet.noneOf(FrequencySource.class); - private Set pathogenicitySources = EnumSet.noneOf(PathogenicitySource.class); - private final List analysisSteps = new ArrayList<>(); - - public Analysis() { - } - - public Analysis(Path vcfPath) { - this.vcfPath = vcfPath; - } - - public Path getVcfPath() { - return vcfPath; - } - - public void setVcfPath(Path vcfPath) { - this.vcfPath = vcfPath; - } - - public Path getPedPath() { - return pedPath; - } - - public void setPedPath(Path pedPath) { - this.pedPath = pedPath; - } - - public SampleData getSampleData() { - return sampleData; - } - - @JsonIgnore - public PriorityType getMainPrioritiserType() { - for (AnalysisStep analysisStep : analysisSteps) { - if (Prioritiser.class.isInstance(analysisStep)) { - Prioritiser prioritiser = (Prioritiser) analysisStep; - //OMIM, if combined with other prioritisers isn't the main one. - if (prioritiser.getPriorityType() != PriorityType.OMIM_PRIORITY) { - return prioritiser.getPriorityType(); - } - } - } - return PriorityType.NONE; - } - - @JsonIgnore - public List> getAnalysisStepsGroupedByFunction() { - List> groups = new ArrayList<>(); - if (analysisSteps.isEmpty()) { - logger.debug("No AnalysisSteps to group."); - return groups; - } - - AnalysisStep currentGroupStep = analysisSteps.get(0); - List currentGroup = new ArrayList<>(); - currentGroup.add(currentGroupStep); - logger.debug("First group is for {} steps", currentGroupStep.getType()); - for (int i = 1; i < analysisSteps.size(); i++) { - AnalysisStep step = analysisSteps.get(i); - - if (currentGroupStep.getType() != step.getType()) { - logger.debug("Making new group for {} steps", step.getType()); - groups.add(currentGroup); - currentGroup = new ArrayList<>(); - currentGroupStep = step; - } - - currentGroup.add(step); - } - //make sure the last group is added too - groups.add(currentGroup); - - return groups; - } - - /** - * The creation and setting of sample data should not be under the control - * of an external user. In production this should only be set by the - * AnalysisRunner as otherwise the entire process will become inconsistent. - * - * @param sampleData - */ - protected void setSampleData(SampleData sampleData) { - this.sampleData = sampleData; - } - - public ModeOfInheritance getModeOfInheritance() { - return modeOfInheritance; - } - - public void setModeOfInheritance(ModeOfInheritance modeOfInheritance) { - this.modeOfInheritance = modeOfInheritance; - } - - public ScoringMode getScoringMode() { - return scoringMode; - } - - public void setScoringMode(ScoringMode scoreMode) { - this.scoringMode = scoreMode; - } - - public List getHpoIds() { - return hpoIds; - } - - public void setHpoIds(List hpoIds) { - this.hpoIds = hpoIds; - } - - public AnalysisMode getAnalysisMode() { - return analysisMode; - } - - public void setAnalysisMode(AnalysisMode analysisMode) { - this.analysisMode = analysisMode; - } - - public Set getFrequencySources() { - return frequencySources; - } - - public void setFrequencySources(Set frequencySources) { - this.frequencySources = frequencySources; - } - - public Set getPathogenicitySources() { - return pathogenicitySources; - } - - public void setPathogenicitySources(Set pathogenicitySources) { - this.pathogenicitySources = pathogenicitySources; - } - - public void addStep(AnalysisStep step) { - this.analysisSteps.add(step); - } - - public void addAllSteps(List analysisSteps) { - this.analysisSteps.addAll(analysisSteps); - } - - public List getAnalysisSteps() { - return analysisSteps; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 73 * hash + Objects.hashCode(this.vcfPath); - hash = 73 * hash + Objects.hashCode(this.pedPath); - hash = 73 * hash + Objects.hashCode(this.hpoIds); - hash = 73 * hash + Objects.hashCode(this.modeOfInheritance); - hash = 73 * hash + Objects.hashCode(this.scoringMode); - hash = 73 * hash + Objects.hashCode(this.analysisMode); - hash = 73 * hash + Objects.hashCode(this.frequencySources); - hash = 73 * hash + Objects.hashCode(this.pathogenicitySources); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final Analysis other = (Analysis) obj; - if (!Objects.equals(this.vcfPath, other.vcfPath)) { - return false; - } - if (!Objects.equals(this.hpoIds, other.hpoIds)) { - return false; - } - if (this.modeOfInheritance != other.modeOfInheritance) { - return false; - } - if (this.scoringMode != other.scoringMode) { - return false; - } - if (this.analysisMode != other.analysisMode) { - return false; - } - if (!Objects.equals(this.frequencySources, other.frequencySources)) { - return false; - } - if (!Objects.equals(this.pathogenicitySources, other.pathogenicitySources)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "Analysis{" + "vcfPath=" + vcfPath + ", pedPath=" + pedPath + ", hpoIds=" + hpoIds + ", modeOfInheritance=" + modeOfInheritance + ", scoringMode=" + scoringMode + ", analysisMode=" + analysisMode + ", frequencySources=" + frequencySources + ", pathogenicitySources=" + pathogenicitySources + ", analysisSteps=" + analysisSteps + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisFactory.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisFactory.java deleted file mode 100644 index 05dcd92c5..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisFactory.java +++ /dev/null @@ -1,168 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.Exomiser; -import de.charite.compbio.exomiser.core.factories.SampleDataFactory; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.HiPhiveOptions; -import de.charite.compbio.exomiser.core.prioritisers.PriorityFactory; -import de.charite.compbio.exomiser.core.prioritisers.ScoringMode; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.List; -import java.util.Set; - -/** - * High-level factory for creating an {@link Analysis} and {@link AnalysisRunner}. This is - * pretty much all that's needed to run an analysis with. - * - * @see Exomiser - * @see AnalysisMode - * - * @since 7.0.0 - * @author Jules Jacobsen - */ -public class AnalysisFactory { - - private final SampleDataFactory sampleDataFactory; - private final PriorityFactory priorityFactory; - private final VariantDataService variantDataService; - - public AnalysisFactory(SampleDataFactory sampleDataFactory, PriorityFactory priorityFactory, VariantDataService variantDataService) { - this.sampleDataFactory = sampleDataFactory; - this.variantDataService = variantDataService; - this.priorityFactory = priorityFactory; - } - - public AnalysisRunner getAnalysisRunnerForMode(AnalysisMode analysisMode) { - switch (analysisMode) { - case FULL: - return new SimpleAnalysisRunner(sampleDataFactory, variantDataService); - case SPARSE: - return new SparseAnalysisRunner(sampleDataFactory, variantDataService); - case PASS_ONLY: - return passOnlyAnalysisRunner(); - default: - //this guy takes up the least RAM - return passOnlyAnalysisRunner(); - } - } - - private AnalysisRunner passOnlyAnalysisRunner() { - return new PassOnlyAnalysisRunner(sampleDataFactory, variantDataService); - } - - public AnalysisBuilder getAnalysisBuilder(Path vcfPath) { - return new AnalysisBuilder(priorityFactory, vcfPath); - } - - public static class AnalysisBuilder { - - private final PriorityFactory priorityFactory; - private final Analysis analysis; - - private final List analysisSteps = new ArrayList<>(); - - private AnalysisBuilder(PriorityFactory priorityFactory, Path vcfPath) { - this.priorityFactory = priorityFactory; - analysis = new Analysis(vcfPath); - } - - public Analysis build() { - analysis.addAllSteps(analysisSteps); - return analysis; - } - - public AnalysisBuilder pedPath(Path pedPath) { - analysis.setPedPath(pedPath); - return this; - } - - public AnalysisBuilder hpoIds(List hpoIds) { - analysis.setHpoIds(hpoIds); - return this; - } - - public AnalysisBuilder modeOfInheritance(ModeOfInheritance modeOfInheritance) { - analysis.setModeOfInheritance(modeOfInheritance); - return this; - } - - public AnalysisBuilder scoringMode(ScoringMode scoreMode) { - analysis.setScoringMode(scoreMode); - return this; - } - - public AnalysisBuilder analysisMode(AnalysisMode analysisMode) { - analysis.setAnalysisMode(analysisMode); - return this; - } - - public AnalysisBuilder frequencySources(Set frequencySources) { - analysis.setFrequencySources(frequencySources); - return this; - } - - public AnalysisBuilder pathogenicitySources(Set pathogenicitySources) { - analysis.setPathogenicitySources(pathogenicitySources); - return this; - } - - public AnalysisBuilder addOmimPrioritiser() { - analysis.addStep(priorityFactory.makeOmimPrioritiser()); - return this; - } - - public AnalysisBuilder addPhivePrioritiser(List hpoIds) { - analysis.addStep(priorityFactory.makePhivePrioritiser(hpoIds)); - return this; - } - - public AnalysisBuilder addHiPhivePrioritiser(List hpoIds) { - analysis.addStep(priorityFactory.makeHiPhivePrioritiser(hpoIds, new HiPhiveOptions())); - return this; - } - - public AnalysisBuilder addHiPhivePrioritiser(List hpoIds, HiPhiveOptions hiPhiveOptions) { - analysis.addStep(priorityFactory.makeHiPhivePrioritiser(hpoIds, hiPhiveOptions)); - return this; - } - - public AnalysisBuilder addPhenixPrioritiser(List hpoIds) { - analysis.addStep(priorityFactory.makePhenixPrioritiser(hpoIds)); - return this; - } - - public AnalysisBuilder addExomeWalkerPrioritiser(List seedGenes) { - analysis.addStep(priorityFactory.makeExomeWalkerPrioritiser(seedGenes)); - return this; - } - - public AnalysisBuilder addAnalysisStep(AnalysisStep analysisStep) { - analysis.addStep(analysisStep); - return this; - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisMode.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisMode.java deleted file mode 100644 index cb2e28909..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisMode.java +++ /dev/null @@ -1,18 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis; - -/** - * Specifies how the {@link Gene} and {@link Variant} in an {@link Analysis} - * should be retained. - * - * @since 7.0.0 - * @author Jules Jacobsen - */ -public enum AnalysisMode { - - FULL, SPARSE, PASS_ONLY; -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunner.java deleted file mode 100644 index 5bccb6d1f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunner.java +++ /dev/null @@ -1,29 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -/** - * - * @since 7.0.0 - * @author Jules Jacobsen - */ -public interface AnalysisRunner { - void runAnalysis(Analysis analysis); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisStep.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisStep.java deleted file mode 100644 index 01dd75563..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisStep.java +++ /dev/null @@ -1,69 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import com.fasterxml.jackson.annotation.JsonIgnore; -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.PriorityScoreFilter; -import de.charite.compbio.exomiser.core.filters.VariantFilter; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriority; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; - -/** - * Interface to enable Filters and Prioritisers to be grouped together and provide some default utility methods. - * - * @since 7.0.0 - * @author Jules Jacobsen - */ -public interface AnalysisStep { - - enum AnalysisStepType {VARIANT_FILTER, GENE_ONLY_DEPENDENT, INHERITANCE_MODE_DEPENDENT}; - - @JsonIgnore - default boolean isInheritanceModeDependent() { - return InheritanceFilter.class.isInstance(this) || OMIMPriority.class.isInstance(this); - } - - @JsonIgnore - default boolean isVariantFilter() { - return VariantFilter.class.isInstance(this); - } - - @JsonIgnore - default boolean isOnlyGeneDependent() { - if (isInheritanceModeDependent()) { - //note that both InheritanceFilter and OMIMPriority operate solely on genes, yet have a dependence on filtered variants - //hence their exclusion here - return false; - } - return Prioritiser.class.isInstance(this) || PriorityScoreFilter.class.isInstance(this); - } - - @JsonIgnore - default AnalysisStepType getType() { - if (isInheritanceModeDependent()) { - return AnalysisStepType.INHERITANCE_MODE_DEPENDENT; - } - if (isVariantFilter()) { - return AnalysisStepType.VARIANT_FILTER; - } - return AnalysisStepType.GENE_ONLY_DEPENDENT; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/PassOnlyAnalysisRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/PassOnlyAnalysisRunner.java deleted file mode 100644 index 0e2b9aa82..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/PassOnlyAnalysisRunner.java +++ /dev/null @@ -1,110 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.factories.SampleDataFactory; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.filters.SimpleGeneFilterRunner; -import de.charite.compbio.exomiser.core.filters.SparseVariantFilterRunner; -import de.charite.compbio.exomiser.core.filters.VariantFilter; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import java.util.Iterator; - -import java.util.List; -import java.util.Map; -import java.util.function.Function; -import java.util.function.Predicate; - -import static java.util.stream.Collectors.toList; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * @since 7.0.0 - * @author Jules Jacobsen - */ -class PassOnlyAnalysisRunner extends AbstractAnalysisRunner { - - private static final Logger logger = LoggerFactory.getLogger(PassOnlyAnalysisRunner.class); - - PassOnlyAnalysisRunner(SampleDataFactory sampleDataFactory, VariantDataService variantDataService) { - super(sampleDataFactory, variantDataService, new SparseVariantFilterRunner(), new SimpleGeneFilterRunner()); - } - - @Override - protected Predicate isAssociatedWithKnownGene(Map genes) { - return variantEvaluation -> { - //Only load the variant if the gene has passed the other filters - //this should drastically reduce the number of collected variants - if(genes.containsKey(variantEvaluation.getGeneSymbol())) { - Gene gene = genes.get(variantEvaluation.getGeneSymbol()); - return gene.passedFilters(); - } - return false; - }; - } - - @Override - protected Predicate runVariantFilters(List variantFilters) { - return variantEvaluation -> { - //loop through the filters and only run if the variantEvaluation has passed all prior filters - variantFilters.stream() - .filter(filter -> variantEvaluation.passedFilters()) - .forEach(filter -> variantFilterRunner.run(filter, variantEvaluation)); - - return variantEvaluation.passedFilters(); - }; - } - - @Override - protected List getFinalGeneList(Map allGenes) { - return allGenes.values() - .stream() - .filter(geneHasVariants()) - .filter(Gene::passedFilters) - .map(removeFailedVariants()) - .collect(toList()); - } - - private Predicate geneHasVariants() { - return gene -> !gene.getVariantEvaluations().isEmpty(); - } - - private Function removeFailedVariants() { - return gene -> { - gene.getVariantEvaluations().removeIf(variantFailedFilters()); - return gene; - }; - } - - private Predicate variantFailedFilters() { - return variantEvaluation -> !variantEvaluation.passedFilters(); - } - - @Override - protected List getFinalVariantList(List variants) { - return variants - .stream() - .filter(VariantEvaluation::passedFilters) - .collect(toList()); - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SettingsParser.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SettingsParser.java deleted file mode 100644 index 2091b788f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SettingsParser.java +++ /dev/null @@ -1,205 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.Exomiser; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.filters.EntrezGeneIdFilter; -import de.charite.compbio.exomiser.core.filters.Filter; -import de.charite.compbio.exomiser.core.filters.FilterSettings; -import de.charite.compbio.exomiser.core.filters.FrequencyDataProvider; -import de.charite.compbio.exomiser.core.filters.FrequencyFilter; -import de.charite.compbio.exomiser.core.filters.GeneFilter; -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.IntervalFilter; -import de.charite.compbio.exomiser.core.filters.KnownVariantFilter; -import de.charite.compbio.exomiser.core.filters.PathogenicityDataProvider; -import de.charite.compbio.exomiser.core.filters.PathogenicityFilter; -import de.charite.compbio.exomiser.core.filters.QualityFilter; -import de.charite.compbio.exomiser.core.filters.VariantEffectFilter; -import de.charite.compbio.exomiser.core.filters.VariantFilter; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; -import de.charite.compbio.exomiser.core.prioritisers.PrioritiserSettings; -import de.charite.compbio.exomiser.core.prioritisers.PriorityFactory; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.ArrayList; -import java.util.EnumSet; -import java.util.List; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Will set-up an {@link Exomiser} exome {@link Analysis} according to the original - * Exomiser protocol. If you wish to analyse a whole genome you will want to set - * up an {@link Analysis} either programmatically with an {@link AnalysisFactory} - * or via a YAML input file through the {@link AnalysisParser} - * - * @since 7.0.0 - * @author Jules Jacobsen - */ -public class SettingsParser { - - private static final Logger logger = LoggerFactory.getLogger(SettingsParser.class); - - public static final Set NON_EXONIC_VARIANT_EFFECTS = EnumSet.of( - VariantEffect.UPSTREAM_GENE_VARIANT, - VariantEffect.INTERGENIC_VARIANT, - VariantEffect.DOWNSTREAM_GENE_VARIANT, - VariantEffect.CODING_TRANSCRIPT_INTRON_VARIANT, - VariantEffect.NON_CODING_TRANSCRIPT_INTRON_VARIANT, - VariantEffect.SYNONYMOUS_VARIANT, - VariantEffect.SPLICE_REGION_VARIANT, - VariantEffect.REGULATORY_REGION_VARIANT - ); - - private static final Set MISSENSE_VARIANT_PATH_SOURCES = EnumSet.of( - PathogenicitySource.POLYPHEN, PathogenicitySource.MUTATION_TASTER, PathogenicitySource.SIFT); - - private final PriorityFactory prioritiserFactory; - private final VariantDataService variantDataService; - - public SettingsParser(PriorityFactory prioritiserFactory, VariantDataService variantDataService) { - this.prioritiserFactory = prioritiserFactory; - this.variantDataService = variantDataService; - } - - /** - * Sets up an Analysis using the published Exomiser algorithm where variants - * are filtered first, then genes and finally the prioritisers are run. - * - * @param settings - * @return - */ - public Analysis parse(Settings settings) { - logger.info("SETTING-UP ANALYSIS"); - PriorityType prioritiserType = settings.getPrioritiserType(); - - Analysis analysis = new Analysis(); - analysis.setVcfPath(settings.getVcfPath()); - analysis.setPedPath(settings.getPedPath()); - analysis.setModeOfInheritance(settings.getModeOfInheritance()); - analysis.setHpoIds(settings.getHpoIds()); - analysis.setFrequencySources(FrequencySource.ALL_EXTERNAL_FREQ_SOURCES); - analysis.setPathogenicitySources(MISSENSE_VARIANT_PATH_SOURCES); - analysis.setScoringMode(prioritiserType.getScoringMode()); - if (settings.runFullAnalysis()) { - analysis.setAnalysisMode(AnalysisMode.FULL); - } else { - analysis.setAnalysisMode(AnalysisMode.SPARSE); - } - - List analysisSteps = makeAnalysisSteps(settings, settings); - analysisSteps.forEach(step -> { - logger.info("ADDING ANALYSIS STEP {}", step); - analysis.addStep(step); - }); - - return analysis; - } - - public List makeAnalysisSteps(FilterSettings filterSettings, PrioritiserSettings prioritiserSettings) { - List steps = new ArrayList<>(); - steps.addAll(makeFilters(filterSettings)); - //Prioritisers should ALWAYS run last. - steps.addAll(makePrioritisers(prioritiserSettings)); - return steps; - } - - private List makeFilters(FilterSettings filterSettings) { - List filters = new ArrayList<>(); - //don't change the order here - variants should ALWAYS be filtered before - //genes have their inheritance modes filtered otherwise the inheritance mode will break leading to altered - //predictions downstream as we only want to test the mode for candidate variants. - //inheritance modes are needed even if we don't have an inheritance gene filter set as the OMIM prioritiser relies on it - filters.addAll(makeVariantFilters(filterSettings)); - filters.addAll(makeGeneFilters(filterSettings)); - return filters; - } - - private List makeVariantFilters(FilterSettings settings) { - List variantFilters = new ArrayList<>(); - //IMPORTANT: These are ordered by increasing computational difficulty and - //the number of variants they will remove. - //Don't change them as this will negatively effect performance. - //GENE_ID - if (!settings.getGenesToKeep().isEmpty()) { - variantFilters.add(new EntrezGeneIdFilter(settings.getGenesToKeep())); - } - //INTERVAL - if (settings.getGeneticInterval() != null) { - variantFilters.add(new IntervalFilter(settings.getGeneticInterval())); - } - //TARGET - //this would make more sense to be called 'removeOffTargetVariants' - if (settings.keepOffTargetVariants() == false) { - //add off target variant effect here - variantFilters.add(new VariantEffectFilter(NON_EXONIC_VARIANT_EFFECTS)); - } - //QUALITY - if (settings.getMinimumQuality() != 0) { - variantFilters.add(new QualityFilter(settings.getMinimumQuality())); - } - //KNOWN VARIANTS - if (settings.removeKnownVariants()) { - variantFilters.add(new FrequencyDataProvider(variantDataService, FrequencySource.ALL_EXTERNAL_FREQ_SOURCES, new KnownVariantFilter())); - } - //FREQUENCY - variantFilters.add(new FrequencyDataProvider(variantDataService, FrequencySource.ALL_EXTERNAL_FREQ_SOURCES, new FrequencyFilter(settings.getMaximumFrequency()))); - //PATHOGENICITY - // if keeping off-target variants need to remove the pathogenicity cutoff to ensure that these variants always - // pass the pathogenicity filter and still get scored for pathogenicity - variantFilters.add(new PathogenicityDataProvider(variantDataService, MISSENSE_VARIANT_PATH_SOURCES, new PathogenicityFilter(settings.removePathFilterCutOff()))); - return variantFilters; - } - - private List makeGeneFilters(FilterSettings settings) { - List geneFilters = new ArrayList<>(); - //INHERITANCE - if (settings.getModeOfInheritance() != ModeOfInheritance.UNINITIALIZED) { - geneFilters.add(new InheritanceFilter(settings.getModeOfInheritance())); - } - return geneFilters; - } - - private List makePrioritisers(PrioritiserSettings settings) { - List prioritisers = new ArrayList<>(); - - PriorityType prioritiserType = settings.getPrioritiserType(); - if (prioritiserType == PriorityType.NONE) { - return prioritisers; - } - - //always run OMIM unless the user specified what they really don't want to run any prioritisers - Prioritiser omimPrioritiser = prioritiserFactory.makeOmimPrioritiser(); - prioritisers.add(omimPrioritiser); - //don't add OMIM prioritiser twice to the list - if (prioritiserType != PriorityType.OMIM_PRIORITY) { - Prioritiser prioritiser = prioritiserFactory.makePrioritiser(prioritiserType, settings); - prioritisers.add(prioritiser); - } - return prioritisers; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SimpleAnalysisRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SimpleAnalysisRunner.java deleted file mode 100644 index 42bd50d8f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SimpleAnalysisRunner.java +++ /dev/null @@ -1,56 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.factories.SampleDataFactory; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.filters.*; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import java.util.List; -import java.util.Map; -import java.util.function.Predicate; - -/** - * - * @since 7.0.0 - * @author Jules Jacobsen - */ -class SimpleAnalysisRunner extends AbstractAnalysisRunner { - - SimpleAnalysisRunner(SampleDataFactory sampleDataFactory, VariantDataService variantDataService) { - super(sampleDataFactory, variantDataService, new SimpleVariantFilterRunner(), new SimpleGeneFilterRunner()); - } - - @Override - protected Predicate isAssociatedWithKnownGene(Map genes) { - return variantEvaluation -> genes.containsKey(variantEvaluation.getGeneSymbol()); - } - - @Override - protected Predicate runVariantFilters(List variantFilters) { - return variantEvaluation -> { - //loop through the filters and run them over the variantEvaluation according to the variantFilterRunner behaviour - variantFilters.stream().forEach(filter -> variantFilterRunner.run(filter, variantEvaluation)); - return true; - }; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SparseAnalysisRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SparseAnalysisRunner.java deleted file mode 100644 index 635b445b2..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/SparseAnalysisRunner.java +++ /dev/null @@ -1,63 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.factories.SampleDataFactory; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.filters.SimpleGeneFilterRunner; -import de.charite.compbio.exomiser.core.filters.SparseVariantFilterRunner; -import de.charite.compbio.exomiser.core.filters.VariantFilter; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import java.util.List; -import java.util.Map; -import java.util.function.Predicate; - -/** - * Analysis runner - will run filters up until a filter fails a variant. - - * @since 7.0.0 - * @author Jules Jacobsen - */ -class SparseAnalysisRunner extends AbstractAnalysisRunner { - - SparseAnalysisRunner(SampleDataFactory sampleDataFactory, VariantDataService variantDataService) { - super(sampleDataFactory, variantDataService, new SparseVariantFilterRunner(), new SimpleGeneFilterRunner()); - } - - @Override - protected Predicate isAssociatedWithKnownGene(Map genes) { - return variantEvaluation -> genes.containsKey(variantEvaluation.getGeneSymbol()); - } - - @Override - protected Predicate runVariantFilters(List variantFilters) { - return variantEvaluation -> { - //loop through the filters and only run if the variantEvaluation has passed all prior filters - variantFilters.stream() - .filter(filter -> variantEvaluation.passedFilters()) - .forEach(filter -> variantFilterRunner.run(filter, variantEvaluation)); - //for sparse filtering we still want all the variants back, even if they failed the filtering stage - they will be reported as failed. - return true; - }; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/ChromosomalRegionIndex.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/ChromosomalRegionIndex.java deleted file mode 100644 index f0695f090..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/ChromosomalRegionIndex.java +++ /dev/null @@ -1,110 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis.util; - -import de.charite.compbio.exomiser.core.model.ChromosomalRegion; -import de.charite.compbio.exomiser.core.model.VariantCoordinates; -import de.charite.compbio.jannovar.impl.intervals.IntervalArray; -import de.charite.compbio.jannovar.impl.intervals.IntervalEndExtractor; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.util.*; - -/** - * Interval tree-backed index for chromosomal regions. It enables extremely fast in-memory lookups to find the regions - * in which a variant can be found. - * - * @author Jules Jacobsen - */ -public class ChromosomalRegionIndex { - - private static final Logger logger = LoggerFactory.getLogger(ChromosomalRegionIndex.class); - - private final Map> index; - - public ChromosomalRegionIndex(Collection chromosomalRegions) { - this.index = populateIndex(chromosomalRegions); - } - - private Map> populateIndex(Collection chromosomalRegions) { - Map> regionIndex = createRegionIndex(chromosomalRegions); - Map> index = createChromosomeIntervalTreeIndex(regionIndex); - logger.debug("Created index for {} chromosomes totalling {} regions", index.keySet().size(), chromosomalRegions.size()); - return index; - } - - private Map> createRegionIndex(Collection chromosomalRegions) { - Map> regionIndex = new HashMap<>(); - for (T region : chromosomalRegions) { - if (!regionIndex.containsKey(region.getChromosome())) { - Set regionsInChr = new LinkedHashSet<>(); - regionsInChr.add(region); - regionIndex.put(region.getChromosome(), regionsInChr); - } else { - regionIndex.get(region.getChromosome()).add(region); - } - } - return regionIndex; - } - - private Map> createChromosomeIntervalTreeIndex(Map> regionIndex) { - Map> index = new HashMap<>(); - for (Integer chrId : regionIndex.keySet()) { - IntervalArray intervalTree = new IntervalArray<>(regionIndex.get(chrId), new ChromosomalRegionEndExtractor()); - logger.debug("Chr: {} - {} regions", chrId, intervalTree.size()); - index.put(chrId, intervalTree); - } - return index; - } - - public List getRegionsContainingVariant(VariantCoordinates variantCoordinates) { - int chromosome = variantCoordinates.getChromosome(); - int position = variantCoordinates.getPosition(); - return getRegionsOverlappingPosition(chromosome, position); - } - - /** - * Use one-based co-ordinates for this method. - * @param chromosome - * @param position - * @return - */ - public List getRegionsOverlappingPosition(int chromosome, int position) { - IntervalArray intervalTree = index.get(chromosome); - if (intervalTree == null) { - return Collections.emptyList(); - } - IntervalArray.QueryResult queryResult = intervalTree.findOverlappingWithPoint(position - 1); - return queryResult.getEntries(); - } - - private class ChromosomalRegionEndExtractor implements IntervalEndExtractor { - - public int getBegin(T region) { - return region.getStart() - 1; - } - - public int getEnd(T region) { - return region.getEnd(); - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/GeneScorer.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/GeneScorer.java deleted file mode 100644 index 2ebbf9482..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/GeneScorer.java +++ /dev/null @@ -1,19 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis.util; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.List; - -/** - * - * @author Jules Jacobsen - */ -public interface GeneScorer { - - public void scoreGenes(List geneList, ModeOfInheritance modeOfInheritance); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/InheritanceModeAnalyser.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/InheritanceModeAnalyser.java deleted file mode 100644 index 4fcc7c6df..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/InheritanceModeAnalyser.java +++ /dev/null @@ -1,172 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis.util; - -import com.google.common.collect.ArrayListMultimap; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.pedigree.*; -import de.charite.compbio.jannovar.pedigree.Genotype; -import htsjdk.variant.variantcontext.*; - -import java.util.EnumSet; -import java.util.List; -import java.util.Set; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import com.google.common.collect.Multimap; -import de.charite.compbio.jannovar.pedigree.compatibilitychecker.InheritanceCompatibilityChecker; -import de.charite.compbio.jannovar.pedigree.compatibilitychecker.InheritanceCompatibilityCheckerException; - -import java.util.ArrayList; -import java.util.Collection; - -import static java.util.stream.Collectors.toSet; - -/** - * This class allows us to do segregation analysis for the variants supplied to - * it i.e., to determine if they are compatible with autosomal recessive, - * autosomal dominant, or X-linked recessive inheritance. - * - * @author Jules Jacobsen - */ -public class InheritanceModeAnalyser { - - private static final Logger logger = LoggerFactory.getLogger(InheritanceModeAnalyser.class); - - private final ModeOfInheritance modeOfInheritance; - private final InheritanceCompatibilityChecker inheritanceCompatibilityChecker; - - public InheritanceModeAnalyser(Pedigree pedigree, ModeOfInheritance modeOfInheritance) { - this.modeOfInheritance = modeOfInheritance; - inheritanceCompatibilityChecker = new InheritanceCompatibilityChecker.Builder().pedigree(pedigree).addMode(modeOfInheritance).build(); - } - - /** - * Analyses the compatibility of a list of {@link Gene} with the {@link ModeOfInheritance} used in the constructor - * of this class according to the observed pattern of inheritance in the {@link Pedigree}. This will only be applied - * to genes and the variants in the gene which have *PASSED* filtering. - */ - public void analyseInheritanceModes(Collection genes) { - genes.stream().filter(Gene::passedFilters).forEach(this::analyseInheritanceModes); - } - - /** - * Analyses the compatibility of a {@link Gene} with the {@link ModeOfInheritance} used in the constructor - * of this class according to the observed pattern of inheritance in the {@link Pedigree}. This will only be applied - * to the variants in the gene which have *PASSED* filtering. - */ - public boolean analyseInheritanceModes(Gene gene) { - if (gene.passedFilters()) { - checkInheritanceCompatibilityOfPassedVariants(gene); - } - return gene.isCompatibleWith(modeOfInheritance); - } - - private void checkInheritanceCompatibilityOfPassedVariants(Gene gene) { - if (modeOfInheritance == ModeOfInheritance.UNINITIALIZED) { - return; - } - //it is *CRITICAL* that only the PASSED variantEvaluations are taken into account here. - List passedVariantEvaluations = gene.getPassedVariantEvaluations(); - - Multimap geneVariants = mapVariantEvaluationsToVariantContextString(passedVariantEvaluations); - List compatibleVariants = getCompatibleVariantContexts(passedVariantEvaluations); - - if (!compatibleVariants.isEmpty()) { - logger.debug("Gene {} has {} variants compatible with {}:", gene.getGeneSymbol(), compatibleVariants.size(), modeOfInheritance); - gene.setInheritanceModes(inheritanceCompatibilityChecker.getInheritanceModes()); - setVariantEvaluationInheritanceModes(geneVariants, compatibleVariants); - } - } - - private Multimap mapVariantEvaluationsToVariantContextString(List passedVariantEvaluations) { - Multimap geneVariants = ArrayListMultimap.create(); - for (VariantEvaluation variantEvaluation : passedVariantEvaluations) { - geneVariants.put(toKeyValue(variantEvaluation.getVariantContext()), variantEvaluation); - } - return geneVariants; - } - - /** - * A {@link VariantContext} cannot be used directly as a key in a Map or put into a Set as it does not override equals or hashCode. - * Also simply using toString isn't an option as the compatible variants returned from the {@link #inheritanceCompatibilityChecker} - * are different instances and have had their genotype strings changed. This method solves these problems. - */ - private String toKeyValue(VariantContext variantContext) { - return variantContext.toStringWithoutGenotypes(); - } - - private List getCompatibleVariantContexts(List passedVariantEvaluations) { - List compatibleVariants = new ArrayList<>(); - //This needs to be done using all the variants in the gene in order to be able to check for compound heterozygous variations - //otherwise it would be simpler to just call this on each variant in turn - try { - //Make sure only ONE variantContext is added if there are multiple alleles as there will be one VariantEvaluation per allele. - //Having multiple copies of a VariantContext might cause problems with the comp het calculations - Set geneVariants = passedVariantEvaluations.stream().map(VariantEvaluation::getVariantContext).collect(toSet()); - compatibleVariants = inheritanceCompatibilityChecker.getCompatibleWith(new ArrayList<>(geneVariants)); - } catch (InheritanceCompatibilityCheckerException ex) { - logger.error(null, ex); - } - return compatibleVariants; - } - - private void setVariantEvaluationInheritanceModes(Multimap geneVariants, List compatibleVariants) { - compatibleVariants.stream() - .forEach(variantContext -> { - //using toStringWithoutGenotypes as the genotype string gets changed and VariantContext does not override equals or hashcode so this cannot be used as a key - Collection variants = geneVariants.get(toKeyValue(variantContext)); - variants.forEach(variant -> { - variant.setInheritanceModes(EnumSet.of(modeOfInheritance)); - logger.debug("{}: {}", variant.getInheritanceModes(), variant); - }); - }); - } - - private Genotype getIndividualGenotype(Allele alternateAllele, List alleles) { - if (alleles.size() != 2) { - return Genotype.NOT_OBSERVED; - } - Allele allele0 = alleles.get(0); - Allele allele1 = alleles.get(1); - if (allele0.isNoCall() || allele1.isNoCall()) { - return Genotype.NOT_OBSERVED; - } - - final boolean isAlt0 = allele0.basesMatch(alternateAllele); - final boolean isAlt1 = allele1.basesMatch(alternateAllele); - if (isAlt0 && isAlt1) { - return Genotype.HOMOZYGOUS_ALT; - } else if (!isAlt0 && !isAlt1) { - return Genotype.HOMOZYGOUS_REF; - } else { - return Genotype.HETEROZYGOUS; - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/RankBasedGeneScorer.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/RankBasedGeneScorer.java deleted file mode 100644 index 48f595b49..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/RankBasedGeneScorer.java +++ /dev/null @@ -1,102 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis.util; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.ArrayList; -import java.util.Collections; -import java.util.Iterator; -import java.util.List; -import java.util.Set; -import java.util.TreeMap; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class RankBasedGeneScorer extends RawScoreGeneScorer { - - private static final Logger logger = LoggerFactory.getLogger(RankBasedGeneScorer.class); - - /** - * Calculates the final ranks of all genes that have been run through the - * filtering and prioritising steps. The strategy is that for autosomal - * dominant diseases, we take the single most pathogenic score of any - * variant affecting the gene; for autosomal recessive diseases, we take the - * mean of the two most pathogenic variants. X-linked diseases are filtered - * such that only X-chromosomal genes are left over, and the single worst - * variant is taken. - *

- * Once the scores have been calculated, we sort the array list of - * {@link exomizer.exome.Gene Gene} objects according to the combined - * filter/priority score. - * - * In the original implementation of the Exomiser, the genes were scored - * according to various criteria that gave them scores between [0,1]. - * However, these scores tended not to be uniformly distributed. This - * function implements an alternative scoring scheme that first ranks the - * genes according to their score and then overwrites the original score - * according to a uniform distribution based on the ranks of the genes. - * - * @param genes - * @param modeOfInheritance - */ - @Override - public void scoreGenes(List genes, ModeOfInheritance modeOfInheritance) { - //first of all score the genes according to their raw scores - for (Gene gene : genes) { - scoreGene(gene, modeOfInheritance); - } - - //now reset the scores according to their rank - logger.info("Scoring genes by RANK."); - // Store all gene and variant scores in sortable map - // The key is a Float representing the raw score. - // The value is a list of one or more genes with this score. - TreeMap> geneScoreMap = new TreeMap<>(); - for (Gene gene : genes) { - float geneScore = gene.getPriorityScore(); - //System.out.println("scoreCandidateGenesByRank, " + g.getGeneSymbol() + ": " + geneScore); - if (geneScoreMap.containsKey(geneScore)) { - List geneScoreGeneList = geneScoreMap.get(geneScore); - geneScoreGeneList.add(gene); - } else { - List geneScoreGeneList = new ArrayList<>(); - geneScoreGeneList.add(gene); - geneScoreMap.put(geneScore, geneScoreGeneList); - } - } - /* - * iterate through all gene scores in descending order calculating a - * score between 1 and 0 depending purely on rank and overwrite gene - * scores with these new scores - */ - float rank = 1; - Set set = geneScoreMap.descendingKeySet(); - Iterator i = set.iterator(); - while (i.hasNext()) { - float score = i.next(); - List geneScoreGeneList = geneScoreMap.get(score); - int sharedHits = geneScoreGeneList.size(); - float adjustedRank = rank; - if (sharedHits > 1) { - adjustedRank = rank + (sharedHits / 2); - } - float newScore = 1f - (adjustedRank / genes.size()); - rank = rank + sharedHits; - for (Gene g : geneScoreGeneList) { - // System.out.print(g.getGeneSymbol()+"\t"); - g.setPriorityScore(newScore); - } - } - - Collections.sort(genes); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/RawScoreGeneScorer.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/RawScoreGeneScorer.java deleted file mode 100644 index 6feee9620..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/RawScoreGeneScorer.java +++ /dev/null @@ -1,252 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis.util; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.PriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.util.*; - -/** - * - * @author Jules Jacobsen - */ -public class RawScoreGeneScorer implements GeneScorer { - - private static final Logger logger = LoggerFactory.getLogger(RawScoreGeneScorer.class); - - /** - * Calculates the final ranks of all genes that have survived the filtering - * and prioritising steps. The strategy is that for autosomal dominant - * diseases, we take the single most pathogenic score of any variant - * affecting the gene; for autosomal recessive diseases, we take the mean of - * the two most pathogenic variants. X-linked diseases are filtered such - * that only X-chromosomal genes are left over, and the single worst variant - * is taken. - *

- * Once the scores have been calculated, we sort the array list of - * {@link exomizer.exome.Gene Gene} objects according to the combined - * filter/priority score. - * - * @param genes - * @param modeOfInheritance - */ - @Override - public void scoreGenes(List genes, ModeOfInheritance modeOfInheritance) { - for (Gene gene : genes) { - scoreGene(gene, modeOfInheritance); - } - Collections.sort(genes); - } - - protected void scoreGene(Gene gene, ModeOfInheritance modeOfInheritance) { - float filterScore = calculateFilterScore(gene.getPassedVariantEvaluations(), modeOfInheritance); - gene.setFilterScore(filterScore); - - float priorityScore = setGenePriorityScore(gene); - - float combinedScore = calculateCombinedScore(filterScore, priorityScore, gene.getPriorityResults().keySet()); - gene.setCombinedScore(combinedScore); - } - - - /** - * Calculates the total priority score for the {@code VariantEvaluation} of - * the gene based on data stored in its associated - * {@link jannovar.exome.Variant Variant} objects. Note that for assumed - * autosomal recessive variants, the mean of the worst two variants is - * taken, and for other modes of inheritance,the since worst value is taken. - *

- * Note that we assume that genes have been filtered for mode of - * inheritance before this function is called. This means that we do not - * need to apply separate filtering for mode of inheritance here. The - * only thing we need to watch out for is whether a variant is homozygous or - * not (for autosomal recessive inheritance, these variants get counted - * twice). - * - * @param variantEvaluations from a gene - * @param modeOfInheritance Autosomal recessive, dominant, or X chromosomal - * recessive. - * @return - */ - protected float calculateFilterScore(List variantEvaluations, ModeOfInheritance modeOfInheritance) { - - if (variantEvaluations.isEmpty()) { - return 0f; - } - if (modeOfInheritance == ModeOfInheritance.AUTOSOMAL_RECESSIVE) { - return calculateAutosomalRecessiveFilterScore(variantEvaluations); - } // not autosomal recessive - - return calculateNonAutosomalRecessiveFilterScore(variantEvaluations); - } - - private float setGenePriorityScore(Gene gene) { - if (gene.getPriorityResults().isEmpty()) { - return 0f; - } - float priorityScore = calculatePriorityScore(gene.getPriorityResults().values()); - gene.setPriorityScore(priorityScore); - return priorityScore; - } - - /** - * Calculate the combined priority score for the gene. - * - * @param priorityScores of the gene - * @return - */ - protected float calculatePriorityScore(Collection priorityScores) { - float finalPriorityScore = 1f; - for (PriorityResult priorityScore : priorityScores) { - finalPriorityScore *= priorityScore.getScore(); - } - return finalPriorityScore; - } - - - /** - * Calculate the combined score of this gene based on the relevance of the - * gene (priorityScore) and the predicted effects of the variants - * (filterScore). - *

- * Note that this method assumes we have calculate the scores, which is - * depending on the function {@link #calculateGeneAndVariantScores} having - * been called. - * - */ - protected float calculateCombinedScore(float filterScore, float priorityScore, Set prioritiesRun) { - - //TODO: what if we ran all of these? It *is* *possible* to do so. - if (prioritiesRun.contains(PriorityType.HIPHIVE_PRIORITY)) { - double logitScore = 1 / (1 + Math.exp(-(-13.28813 + 10.39451 * priorityScore + 9.18381 * filterScore))); - return (float) logitScore; - } else if (prioritiesRun.contains(PriorityType.EXOMEWALKER_PRIORITY)) { - //NB this is based on raw walker score - double logitScore = 1 / (1 + Math.exp(-(-8.67972 + 219.40082 * priorityScore + 8.54374 * filterScore))); - return (float) logitScore; - } else if (prioritiesRun.contains(PriorityType.PHENIX_PRIORITY)) { - double logitScore = 1 / (1 + Math.exp(-(-11.15659 + 13.21835 * priorityScore + 4.08667 * filterScore))); - return (float) logitScore; - } else { - return (priorityScore + filterScore) / 2f; - } - } - - - - /** - * For assumed autosomal recessive variants, this method calculates the mean - * of the worst(highest numerical) two variants. - * - * @param variantEvaluations - * @return - */ - protected float calculateAutosomalRecessiveFilterScore(List variantEvaluations) { - List hetFilterScores = new ArrayList<>(); - List homFilterScores = new ArrayList<>(); - - for (VariantEvaluation ve : variantEvaluations) { - // Realised original logic allows a comphet to be calculated between a top scoring het and second place hom which is wrong - // Jannovar seems to currently be allowing hom_ref variants through so skip these as well - if (variantIsHomozygousAlt(ve)){ - homFilterScores.add(ve.getVariantScore()); - } - else if (variantIsHeterozygous(ve)){ - hetFilterScores.add(ve.getVariantScore()); - } - } - //maybe the variants were all crappy and nothing passed.... - if (hetFilterScores.isEmpty() && homFilterScores.isEmpty()) { - return 0f; - } - sortFilterScoresInDecendingOrder(homFilterScores); - sortFilterScoresInDecendingOrder(hetFilterScores); - - if (hetFilterScores.size() < 2 && homFilterScores.isEmpty()) { - //not really AR are we? - return calculateNonAutosomalRecessiveFilterScore(variantEvaluations); - } - - float bestCmpHetScore = 0f; - float bestHomScore = 0f; - - if (hetFilterScores.size() >= 2) { - bestCmpHetScore = calculateAverageOfFirstTwoScores(hetFilterScores); - } - if (!homFilterScores.isEmpty()){ - bestHomScore = homFilterScores.get(0); - } - return Float.max(bestHomScore, bestCmpHetScore); - } - - private boolean variantIsHomozygousAlt(VariantEvaluation ve) { - return ve.getVariantContext().getGenotype(0).isHomVar(); - } - - private boolean variantIsHeterozygous(VariantEvaluation ve) { - return ve.getVariantContext().getGenotype(0).isHet(); - } - - private void sortFilterScoresInDecendingOrder(List filterScores) { - Collections.sort(filterScores, Collections.reverseOrder()); - } - - private float calculateAverageOfFirstTwoScores(List filterScores) { - float x = filterScores.get(0); - float y = filterScores.get(1); - float filterScore = (x + y) / (2f); - return filterScore; - } - - /** - * For other variants with non-autosomal recessive modes of inheritance, the - * worst (highest numerical) value is taken. - * - * @param variantEvaluations - * @return - */ - protected float calculateNonAutosomalRecessiveFilterScore(List variantEvaluations) { - List filterScores = new ArrayList<>(); - - for (VariantEvaluation ve : variantEvaluations) { - filterScores.add(ve.getVariantScore()); - } - //maybe the variants were all crappy and nothing passed.... - if (filterScores.isEmpty()) { - return 0f; - } - - sortFilterScoresInDecendingOrder(filterScores); - //Not autosomal recessive, there is just one heterozygous mutation - //thus return only the single best score. - return filterScores.get(0); - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/CaddDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/CaddDao.java deleted file mode 100644 index 9be59fbe2..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/CaddDao.java +++ /dev/null @@ -1,127 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.pathogenicity.CaddScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import htsjdk.tribble.readers.TabixReader; - -import java.io.IOException; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.stereotype.Component; - -/** - * - * @author Jules Jacobsen - */ -@Component -public class CaddDao { - - private final Logger logger = LoggerFactory.getLogger(CaddDao.class); - - private final TabixReader inDelTabixReader; - private final TabixReader snvTabixReader; - - public CaddDao(TabixReader inDelTabixReader, TabixReader snvTabixReader) { - this.inDelTabixReader = inDelTabixReader; - this.snvTabixReader = snvTabixReader; - } - - @Cacheable(value = "cadd", key = "#variant.chromosomalVariant") - public PathogenicityData getPathogenicityData(Variant variant) { - return processResults(variant); - } - - PathogenicityData processResults(Variant variant) { - String chromosome = variant.getChromosomeName(); - String ref = variant.getRef(); - String alt = variant.getAlt(); - int start = variant.getPosition(); - if (isIndel(ref, alt)) { - // deal with fact that deletion coordinates are handled differently by Jannovar - if (alt.equals("-")) { - start -= 1; - } - return getIndelCaddPathogenicityData(chromosome, start, ref, alt); - } - - return getSnvCaddPathogenicityData(chromosome, start, ref, alt); - } - - private boolean isIndel(String ref, String alt) { - return ref.equals("-") || alt.equals("-"); - } - - private PathogenicityData getIndelCaddPathogenicityData(String chromosome, int start, String ref, String alt) { - try { - TabixReader.Iterator results = inDelTabixReader.query(chromosome + ":" + start + "-" + start); - String line; - //there can be 0 - N results - while ((line = results.next()) != null) { - //return format: - //chr pos ref alt rawS wantedScore - //1 2000 A T -0.324 3.21 - String[] elements = line.split("\t"); - // deal with fact that Jannovar represents indels differently - String caddRef = elements[2].substring(1); - String caddAlt = elements[3].substring(1); - if (caddRef.equals("")) { - caddRef = "-"; - } - if (caddAlt.equals("")) { - caddAlt = "-"; - } - if (caddRef.equals(ref) && caddAlt.equals(alt)) { - return makeCaddPathData(elements[5]); - } - - } - } catch (IOException e) { - logger.error("Unable to read from Indel tabix file {}", inDelTabixReader.getSource(), e); - } - return new PathogenicityData(); - } - - private PathogenicityData getSnvCaddPathogenicityData(String chromosome, int start, String ref, String alt) { - try { - // query SNV file - TabixReader.Iterator results = snvTabixReader.query(chromosome + ":" + start + "-" + start); - String line; - while ((line = results.next()) != null) { - String[] elements = line.split("\t"); - String caddRef = elements[2]; - String caddAlt = elements[3]; - if (caddRef.equals(ref) && caddAlt.equals(alt)) { - return makeCaddPathData(elements[5]); - } - } - } catch (IOException e) { - logger.error("Unable to read from SNV tabix file {}", snvTabixReader.getSource(), e); - } - return new PathogenicityData(); - } - - private PathogenicityData makeCaddPathData(String phredScaledCaddScore) { - CaddScore caddScore = parseCaddScore(phredScaledCaddScore); - return new PathogenicityData(caddScore); - } - - private CaddScore parseCaddScore(String phredScaledCaddScore) throws NumberFormatException { - float score = Float.parseFloat(phredScaledCaddScore); - float cadd = rescaleLogTenBasedScore(score); - return new CaddScore(cadd); - } - - /** - * rescales a log10-Phred based score to a value between 0 and 1 - */ - private float rescaleLogTenBasedScore(float caddRaw) { - return 1 - (float) Math.pow(10, -(caddRaw / 10)); - } -} \ No newline at end of file diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultDiseaseDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultDiseaseDao.java deleted file mode 100644 index ba993bc1e..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultDiseaseDao.java +++ /dev/null @@ -1,83 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Set; -import java.util.TreeSet; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.stereotype.Repository; - -/** - * - * @author Jules Jacobsen - */ -@Repository -public class DefaultDiseaseDao implements DiseaseDao { - - private final Logger logger = LoggerFactory.getLogger(DefaultDiseaseDao.class); - - @Autowired - private DataSource dataSource; - - @Override - public Set getHpoIdsForDiseaseId(String diseaseId) { - String hpoListString = ""; - try (Connection connection = dataSource.getConnection()) { - PreparedStatement hpoIdsStatement = connection.prepareStatement("SELECT hp_id FROM disease_hp WHERE disease_id = ?"); - hpoIdsStatement.setString(1, diseaseId); - ResultSet rs = hpoIdsStatement.executeQuery(); - rs.next(); - hpoListString = rs.getString(1); - } catch (SQLException e) { - logger.error("Unable to retrieve HPO terms for disease {}", diseaseId, e); - } - List diseaseHpoIds = parseHpoIdListFromString(hpoListString); - logger.info("{} HPO ids retrieved for disease {} - {}", diseaseHpoIds.size(), diseaseId, diseaseHpoIds); - return new TreeSet<>(diseaseHpoIds); - } - - private List parseHpoIdListFromString(String hpoIdsString) { - String[] hpoArray = hpoIdsString.split(","); - List hpoIdList = new ArrayList<>(); - for (String string : hpoArray) { - hpoIdList.add(string.trim()); - } - return hpoIdList; - } - - @Cacheable(value="diseases") - @Override - public Map getDiseaseIdToTerms() { - Map termsCache = new HashMap(); - String diseaseNameQuery = "SELECT disease_id, diseasename FROM disease"; - try (Connection connection = dataSource.getConnection(); - PreparedStatement ontologyTermsStatement = connection.prepareStatement(diseaseNameQuery); - ResultSet rs = ontologyTermsStatement.executeQuery()) { - while (rs.next()) { - String id = rs.getString(1); - String term = rs.getString(2); - id = id.trim(); - termsCache.put(id, term); - } - } catch (SQLException e) { - logger.error("Unable to execute query '{}' for disease terms cache", diseaseNameQuery, e); - } - logger.info("Created {} disease id : term mappings", termsCache.size()); - return termsCache; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultFrequencyDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultFrequencyDao.java deleted file mode 100644 index 656bfd77d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultFrequencyDao.java +++ /dev/null @@ -1,168 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import static de.charite.compbio.exomiser.core.model.frequency.FrequencySource.*; -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import de.charite.compbio.exomiser.core.model.Variant; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.HashSet; -import java.util.LinkedHashMap; -import java.util.Map; -import java.util.Map.Entry; -import java.util.Set; -import javax.sql.DataSource; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.stereotype.Repository; - -/** - * Default implementation of the FrequencyDao. Can be configured to use caching. - * - * @author Jules Jacobsen - */ -@Repository -public class DefaultFrequencyDao implements FrequencyDao { - - private final Logger logger = LoggerFactory.getLogger(DefaultFrequencyDao.class); - - @Autowired - private DataSource dataSource; - - private final Map frequencySourceColumnMappings; - - public DefaultFrequencyDao() { - frequencySourceColumnMappings = new LinkedHashMap<>(); - frequencySourceColumnMappings.put(THOUSAND_GENOMES, "dbSNPmaf"); - frequencySourceColumnMappings.put(ESP_AFRICAN_AMERICAN, "espAAmaf"); - frequencySourceColumnMappings.put(ESP_EUROPEAN_AMERICAN, "espEAmaf"); - frequencySourceColumnMappings.put(ESP_ALL, "espAllmaf"); - frequencySourceColumnMappings.put(EXAC_AFRICAN_INC_AFRICAN_AMERICAN, "exacAFRmaf"); - frequencySourceColumnMappings.put(EXAC_AMERICAN, "exacAMRmaf"); - frequencySourceColumnMappings.put(EXAC_EAST_ASIAN, "exacEASmaf"); - frequencySourceColumnMappings.put(EXAC_FINNISH, "exacFINmaf"); - frequencySourceColumnMappings.put(EXAC_NON_FINNISH_EUROPEAN, "exacNFEmaf"); - frequencySourceColumnMappings.put(EXAC_SOUTH_ASIAN, "exacSASmaf"); - frequencySourceColumnMappings.put(EXAC_OTHER, "exacOTHmaf"); - - logger.debug("FrequencySource to columnLabel mappings: {}", frequencySourceColumnMappings); - } - - - - @Cacheable(value = "frequency", key = "#variant.chromosomalVariant") - @Override - public FrequencyData getFrequencyData(Variant variant) { - - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement preparedFrequencyQuery = createPreparedStatement(connection, variant); - ResultSet rs = preparedFrequencyQuery.executeQuery()) { - - return processResults(rs); - - } catch (SQLException e) { - logger.error("Error executing frequency query: ", e); - } - return FrequencyData.EMPTY_DATA; - } - - private PreparedStatement createPreparedStatement(Connection connection, Variant variant) throws SQLException { - // Added order by clause as sometimes have multiple rows for the same position, ref and alt and first row may have no freq data - // Can remove if future versions of database remove these duplicated rows - - //TODO: optimise this query to remove the order by - String frequencyQuery = "SELECT rsid, dbSNPmaf, espEAmaf, espAAmaf, espAllmaf, exacAFRmaf, exacAMRmaf, exacEASmaf, exacFINmaf, exacNFEmaf, exacOTHmaf, exacSASmaf " - + "FROM frequency " - + "WHERE chromosome = ? " - + "AND position = ? " - + "AND ref = ? " - + "AND alt = ? " - + "ORDER BY dbsnpmaf desc, espeamaf desc, espaamaf desc, espallmaf desc "; - PreparedStatement ps = connection.prepareStatement(frequencyQuery); - - // FIXME(holtgrewe): The position comes directly from the GenomeChange in variant. This is fine. Currently, I'm - // converting from the 0-based positions in new Jannovar's GenomeChange to 1-based for Exomisers (which is what - // the old Janovar used). Also, the reference is "" in the case of deletions and alt is "" in the case of - // insertions. The old representation for either was "-". Changing this will probably - ps.setInt(1, variant.getChromosome()); - ps.setInt(2, variant.getPosition()); - ps.setString(3, variant.getRef()); - ps.setString(4, variant.getAlt()); - - return ps; - } - - private FrequencyData processResults(ResultSet rs) throws SQLException { - - RsId rsId = null; - Set frequencies = new HashSet<>(); - - if (rs.next()) { - rsId = makeRsId(rs); - frequencies = makeFrequencies(rs, frequencies); - } - - return makeFrequencyData(rsId, frequencies); - } - - private FrequencyData makeFrequencyData(RsId rsId, Set frequencies) { - if (rsId == null && frequencies.isEmpty()) { - return FrequencyData.EMPTY_DATA; - } - return new FrequencyData(rsId, frequencies); - } - - private RsId makeRsId(ResultSet rs) throws SQLException { - int dbSNPid = rs.getInt("rsid"); - if (!rs.wasNull() && dbSNPid != 0) { - return new RsId(dbSNPid); - } - return null; - } - - private Set makeFrequencies(ResultSet rs, Set frequencies) throws SQLException { - for (Entry sourceColumnMapping : frequencySourceColumnMappings.entrySet()) { - FrequencySource source = sourceColumnMapping.getKey(); - String columnLabel = sourceColumnMapping.getValue(); - float freq = rs.getFloat(columnLabel); - if (!rs.wasNull() && freq != 0f) { - frequencies.add(new Frequency(freq, source)); - } - } - return frequencies; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultPathogenicityDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultPathogenicityDao.java deleted file mode 100644 index ffefe3705..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DefaultPathogenicityDao.java +++ /dev/null @@ -1,186 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.pathogenicity.CaddScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.MutationTasterScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.SiftScore; -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityScore; -import de.charite.compbio.jannovar.annotation.VariantEffect; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; - -import javax.sql.DataSource; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.stereotype.Repository; - -/** - * - * @author Jules Jacobsen - */ -@Repository -public class DefaultPathogenicityDao implements PathogenicityDao { - - private final Logger logger = LoggerFactory.getLogger(DefaultPathogenicityDao.class); - - @Autowired - private DataSource dataSource; - - @Cacheable(value = "pathogenicity", key = "#variant.chromosomalVariant") - @Override - public PathogenicityData getPathogenicityData(Variant variant) { - - //if a variant is not classified as missense then we don't need to hit - //the database as we're going to assign it a constant pathogenicity score. - VariantEffect variantEffect = variant.getVariantEffect(); - if (variantEffect != VariantEffect.MISSENSE_VARIANT) { - return PathogenicityData.EMPTY_DATA; - } - - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement preparedStatement = createPreparedStatement(connection, variant); - ResultSet rs = preparedStatement.executeQuery()) { - - return processResults(rs, variant); - - } catch (SQLException e) { - logger.error("Error executing pathogenicity query: ", e); - } - return PathogenicityData.EMPTY_DATA; - } - - private PreparedStatement createPreparedStatement(Connection connection, Variant variant) throws SQLException { - String query = String.format("SELECT " - + "sift," - + "polyphen," - + "mut_taster " - //As of 20150511 we're not going to use the CADD data from the database as it requires normalising and hasn't been - //using it will COMPLETELY FUBAR THE PATHOGENICITY FILTER, so don't add it back until it's normalised on a 0-1 scale. -// + "cadd " - + "FROM variant " - + "WHERE chromosome = ? " - + "AND position = ? " - + "AND ref = ? " - + "AND alt = ? "); - PreparedStatement ps = connection.prepareStatement(query); - - // FIXME(holtgrewe): See my comment in {@link DefaultFrequencyDao.createPreparedStatement}. - // Note: when we get here, we have tested above that we have a nonsynonymous substitution - ps.setInt(1, variant.getChromosome()); - ps.setInt(2, variant.getPosition()); - ps.setString(3, variant.getRef()); - ps.setString(4, variant.getAlt()); - - return ps; - } - - PathogenicityData processResults(ResultSet rs, Variant variant) throws SQLException { - - SiftScore siftScore = null; - PolyPhenScore polyPhenScore = null; - MutationTasterScore mutationTasterScore = null; - - /* - * Switched db back to potentially having multiple rows per variant - * if alt transcripts leads to diff aa changes and pathogenicities. - * In future if know which transcript is more likely in the disease - * tissue can use the most appropriate row but for now take max - */ - while (rs.next()) { - siftScore = getBestSiftScore(rs, siftScore); - polyPhenScore = getBestPolyPhenScore(rs, polyPhenScore); - mutationTasterScore = getBestMutationTasterScore(rs, mutationTasterScore); - } - - return makePathogenicityData(siftScore, polyPhenScore, mutationTasterScore); - - } - - private PathogenicityData makePathogenicityData(SiftScore siftScore, PolyPhenScore polyPhenScore, MutationTasterScore mutationTasterScore) { - if (siftScore == null && polyPhenScore == null && mutationTasterScore == null) { - return PathogenicityData.EMPTY_DATA; - } - return new PathogenicityData(polyPhenScore, mutationTasterScore, siftScore); - } - - private SiftScore getBestSiftScore(ResultSet rs, SiftScore score) throws SQLException { - float rowVal = rs.getFloat("sift"); - if (valueNotNullOrNoParseFloat(rs, rowVal)) { - if (score == null || rowVal < score.getScore()) { - return new SiftScore(rowVal); - } - } - return score; - } - - private PolyPhenScore getBestPolyPhenScore(ResultSet rs, PolyPhenScore score) throws SQLException { - float rowVal = rs.getFloat("polyphen"); - if (valueNotNullOrNoParseFloat(rs, rowVal)) { - if (score == null || rowVal > score.getScore()) { - return new PolyPhenScore(rowVal); - } - } - return score; - } - - private MutationTasterScore getBestMutationTasterScore(ResultSet rs, MutationTasterScore score) throws SQLException { - float rowVal = rs.getFloat("mut_taster"); - if (valueNotNullOrNoParseFloat(rs, rowVal)) { - if (score == null || rowVal > score.getScore()) { - return new MutationTasterScore(rowVal); - } - } - return score; - } - - private CaddScore getBestCaddScore(ResultSet rs, CaddScore score) throws SQLException { - float rowVal = rs.getFloat("cadd"); - if (valueNotNullOrNoParseFloat(rs, rowVal)) { - if (score == null || rowVal > score.getScore()) { - return new CaddScore(rowVal); - } - } - return score; - } - - //TODO: this should vanish in the next db build. Check and remove. - private static final float NOPARSE_FLOAT = -5f; - - private static boolean valueNotNullOrNoParseFloat(ResultSet rs, float rowVal) throws SQLException { - return !rs.wasNull() && rowVal != NOPARSE_FLOAT; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DiseaseDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DiseaseDao.java deleted file mode 100644 index 4cfebc11a..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/DiseaseDao.java +++ /dev/null @@ -1,21 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import java.util.Map; -import java.util.Set; - -/** - * - * @author Jules Jacobsen - */ -public interface DiseaseDao { - - public Set getHpoIdsForDiseaseId(String diseaseId); - - public Map getDiseaseIdToTerms(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/FrequencyDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/FrequencyDao.java deleted file mode 100644 index e8399c774..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/FrequencyDao.java +++ /dev/null @@ -1,19 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; - -/** - * - * @author Jules Jacobsen - */ -public interface FrequencyDao { - - FrequencyData getFrequencyData(Variant variant); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/HumanPhenotypeOntologyDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/HumanPhenotypeOntologyDao.java deleted file mode 100644 index 3dbd870ed..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/HumanPhenotypeOntologyDao.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.Collections; -import java.util.Set; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Repository; - -/** - * - * @author Jules Jacobsen - */ -@Repository -public class HumanPhenotypeOntologyDao implements OntologyDao { - - private static final Logger logger = LoggerFactory.getLogger(HumanPhenotypeOntologyDao.class); - - @Autowired - private DataSource dataSource; - - private final OntologyDaoResultSetProcessor rsProcessor = new OntologyDaoResultSetProcessor(); - - @Override - public Set getAllTerms() { - String query = "select id, lcname as term from hpo"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement ontologyTermsStatement = connection.prepareStatement(query); - ResultSet rs = ontologyTermsStatement.executeQuery()) { - - return rsProcessor.processOntologyTermsResultSet(rs); - - } catch (SQLException e) { - logger.error("Unable to execute query '{}' for HPO terms", query, e); - } - return Collections.emptySet(); - } - - @Override - public Set getPhenotypeMatchesForHpoTerm(PhenotypeTerm hpoTerm) { - String mappingQuery = "SELECT simj, ic, score, hp_id_hit AS hit_id, hp_hit_term AS hit_term, lcs_id, lcs_term FROM hp_hp_mappings WHERE hp_id = ?"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement ps = setQueryHpId(connection, mappingQuery, hpoTerm); - ResultSet rs = ps.executeQuery()) { - - return rsProcessor.processOntologyTermMatchResultSet(rs, hpoTerm); - - } catch (SQLException e) { - logger.error("Unable to execute query '{}' for HP-HP match terms", mappingQuery, e); - } - return Collections.emptySet(); - } - - private PreparedStatement setQueryHpId(final Connection connection, String mappingQuery, PhenotypeTerm hpoTerm) throws SQLException { - PreparedStatement ps = connection.prepareStatement(mappingQuery); - ps.setString(1, hpoTerm.getId()); - return ps; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/MousePhenotypeOntologyDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/MousePhenotypeOntologyDao.java deleted file mode 100644 index d75846d6f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/MousePhenotypeOntologyDao.java +++ /dev/null @@ -1,75 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.Collections; -import java.util.Set; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Repository; - -/** - * - * @author Jules Jacobsen - */ -@Repository -public class MousePhenotypeOntologyDao implements OntologyDao { - - private static final Logger logger = LoggerFactory.getLogger(MousePhenotypeOntologyDao.class); - - @Autowired - private DataSource dataSource; - - private final OntologyDaoResultSetProcessor rsProcessor = new OntologyDaoResultSetProcessor(); - - @Override - public Set getAllTerms() { - String query = "SELECT mp_id as id, mp_term as term FROM mp"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement ontologyTermsStatement = connection.prepareStatement(query); - ResultSet rs = ontologyTermsStatement.executeQuery()) { - - return rsProcessor.processOntologyTermsResultSet(rs); - - } catch (SQLException e) { - logger.error("Unable to execute query '{}' for MPO terms", query, e); - } - return Collections.emptySet(); - } - - @Override - public Set getPhenotypeMatchesForHpoTerm(PhenotypeTerm hpoTerm) { - String mappingQuery = "SELECT simj, ic, score, mp_id AS hit_id, mp_term AS hit_term, lcs_id, lcs_term FROM hp_mp_mappings WHERE hp_id = ?"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement ps = setQueryHpId(connection, mappingQuery, hpoTerm); - ResultSet rs = ps.executeQuery()) { - - return rsProcessor.processOntologyTermMatchResultSet(rs, hpoTerm); - - } catch (SQLException e) { - logger.error("Unable to execute query '{}' for HP-MP match terms", mappingQuery, e); - } - return Collections.emptySet(); - } - - private PreparedStatement setQueryHpId(final Connection connection, String mappingQuery, PhenotypeTerm hpoTerm) throws SQLException { - PreparedStatement ps = connection.prepareStatement(mappingQuery); - ps.setString(1, hpoTerm.getId()); - return ps; - } - - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/OntologyDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/OntologyDao.java deleted file mode 100644 index d0990a116..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/OntologyDao.java +++ /dev/null @@ -1,21 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.Set; - -/** - * - * @author Jules Jacobsen - */ -public interface OntologyDao { - - public Set getAllTerms(); - - public Set getPhenotypeMatchesForHpoTerm(PhenotypeTerm hpoTerm); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/OntologyDaoResultSetProcessor.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/OntologyDaoResultSetProcessor.java deleted file mode 100644 index b4c466465..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/OntologyDaoResultSetProcessor.java +++ /dev/null @@ -1,57 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.HashSet; -import java.util.LinkedHashSet; -import java.util.Set; - -/** - * Common class for processing results sets from ontology tables - these are all - * of the form id:term for each species. - * - * @author Jules Jacobsen - */ -public class OntologyDaoResultSetProcessor { - - public Set processOntologyTermsResultSet(ResultSet rs) throws SQLException { - Set termsCache = new HashSet(); - while (rs.next()) { - String id = rs.getString("id"); - String term = rs.getString("term"); - id = id.trim(); - PhenotypeTerm phenotypeTerm = new PhenotypeTerm(id, term, 0.0d); - termsCache.add(phenotypeTerm); - } - return termsCache; - } - - Set processOntologyTermMatchResultSet(ResultSet rs, PhenotypeTerm queryPhenotype) throws SQLException { - Set phenotypeMatchs = new LinkedHashSet(); - while (rs.next()) { - //simj, ic, score, hp_id_hit AS hit_id, hp_hit_term AS hit_term, lcs_id, lcs_term - String matchId = rs.getString("hit_id"); - String matchTerm = rs.getString("hit_term"); - PhenotypeTerm matchPhenotype = new PhenotypeTerm(matchId, matchTerm, 0.0d); - - double lcsIc = rs.getDouble("ic"); - String lcsId = rs.getString("lcs_id"); - String lcsTerm = rs.getString("lcs_term"); - PhenotypeTerm lcsPhenotype = new PhenotypeTerm(lcsId, lcsTerm, lcsIc); - - double simj = rs.getDouble("simj"); - double score = rs.getDouble("score"); - PhenotypeMatch match = new PhenotypeMatch(queryPhenotype, matchPhenotype, simj, score, lcsPhenotype); - phenotypeMatchs.add(match); - } - return phenotypeMatchs; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/PathogenicityDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/PathogenicityDao.java deleted file mode 100644 index 9c5f87591..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/PathogenicityDao.java +++ /dev/null @@ -1,19 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; - -/** - * - * @author Jules Jacobsen - */ -public interface PathogenicityDao { - - PathogenicityData getPathogenicityData(Variant variant); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/RegulatoryFeatureDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/RegulatoryFeatureDao.java deleted file mode 100644 index b16283a52..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/RegulatoryFeatureDao.java +++ /dev/null @@ -1,113 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.RegulatoryFeature; -import de.charite.compbio.exomiser.core.model.RegulatoryFeature.FeatureType; -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.jannovar.annotation.VariantEffect; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.Collections; -import java.util.List; -import java.util.Set; - -import javax.sql.DataSource; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.stereotype.Repository; - -/** - * - * @author Jules Jacobsen - */ -@Repository -public class RegulatoryFeatureDao { - - private final Logger logger = LoggerFactory.getLogger(RegulatoryFeatureDao.class); - - @Autowired - private DataSource dataSource; - - public List getRegulatoryFeatures() { - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement preparedStatement = connection.prepareStatement("select CHROMOSOME as chr, START as start, \"end\" as end, FEATURE_TYPE as feature_type from REGULATORY_REGIONS"); - ResultSet rs = preparedStatement.executeQuery()) { - - return processRegulatoryFeatureResults(rs); - - } catch (SQLException e) { - logger.error("Error executing regulatory feature query: ", e); - } - return Collections.emptyList(); - } - - private List processRegulatoryFeatureResults(ResultSet rs) throws SQLException { - List regulatoryFeatures = new ArrayList<>(); - while (rs.next()) { - int chr = rs.getInt("chr"); - int start = rs.getInt("start"); - int end = rs.getInt("end"); - String featureType = rs.getString("feature_type"); - FeatureType type = convertToFeatureType(featureType); - if (type != FeatureType.UNKNOWN) { - RegulatoryFeature regulatoryFeature = new RegulatoryFeature(chr, start, end, type); - regulatoryFeatures.add(regulatoryFeature); - } - } - return regulatoryFeatures; - } - - //TODO: Jannovar VariantEffect doesn't capture these well - //TODO: should these also be combined with the TADs? CTCF binding sites can act as insulators, enhancers can have long-range effects within a TAD, promoters are shorter range (to my knowledge), open chromatin has what effect on expression? - private FeatureType convertToFeatureType(String featureType) { - switch(featureType) { - case "Enhancer": - return FeatureType.ENHANCER; - case "TF binding site": - return FeatureType.TF_BINDING_SITE; - case "Promoter": - return FeatureType.PROMOTER; - case "Promoter Flanking Region": - return FeatureType.PROMOTER_FLANKING_REGION; - case "CTCF Binding Site": - return FeatureType.CTCF_BINDING_SITE; - case "Open chromatin": - return FeatureType.OPEN_CHROMATIN; - case "FANTOM permissive": - return FeatureType.FANTOM_PERMISSIVE; - default: - return FeatureType.UNKNOWN; - } - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/RemmDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/RemmDao.java deleted file mode 100644 index 42bc0747e..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/RemmDao.java +++ /dev/null @@ -1,116 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.pathogenicity.RemmScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import htsjdk.tribble.readers.TabixReader; - -import java.io.IOException; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.stereotype.Component; - -/** - * - * @author Jules Jacobsen - */ -@Component -public class RemmDao { - - private final Logger logger = LoggerFactory.getLogger(RemmDao.class); - - private final TabixReader remmTabixReader; - - public RemmDao(TabixReader remmTabixReader) { - this.remmTabixReader = remmTabixReader; - } - - @Cacheable(value = "remm", key = "#variant.chromosomalVariant") - public PathogenicityData getPathogenicityData(Variant variant) { - // MNCDS has not been trained on missense variants so skip these - if (variant.getVariantEffect() == VariantEffect.MISSENSE_VARIANT) { - return new PathogenicityData(); - } - return processResults(variant); - } - - private PathogenicityData processResults(Variant variant) { - String chromosome = variant.getChromosomeName(); - int start = variant.getPosition(); - int end = calculateEndPosition(variant); - return getRemmData(chromosome, start, end); - } - - private int calculateEndPosition(Variant variant) { - int end = variant.getPosition(); - //these end positions are calculated according to recommendation by Max and Peter who produced the REMM score - //don't change this unless they say. - if (isDeletion(variant)) { - // test all deleted bases - end += variant.getRef().length(); - } else if (isInsertion(variant)) { - // test bases either side of insertion - end += 1; - } - return end; - } - - private static boolean isDeletion(Variant variant) { - return variant.getAlt().equals("-"); - } - - private static boolean isInsertion(Variant variant) { - return variant.getRef().equals("-"); - } - - private PathogenicityData getRemmData(String chromosome, int start, int end) throws NumberFormatException { - try { - float ncds = Float.NaN; - String line; -// logger.info("Running tabix with " + chromosome + ":" + start + "-" + end); - TabixReader.Iterator results = remmTabixReader.query(chromosome + ":" + start + "-" + end); - while ((line = results.next()) != null) { - String[] elements = line.split("\t"); - if (Float.isNaN(ncds)) { - ncds = Float.parseFloat(elements[2]); - } else { - ncds = Math.max(ncds, Float.parseFloat(elements[2])); - } - } - //logger.info("Final score " + ncds); - if (!Float.isNaN(ncds)) { - return new PathogenicityData(new RemmScore(ncds)); - } - } catch (IOException e) { - logger.error("Unable to read from REMM tabix file {}", remmTabixReader.getSource(), e); - } - return new PathogenicityData(); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/TadDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/TadDao.java deleted file mode 100644 index 80b6254e9..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/TadDao.java +++ /dev/null @@ -1,101 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Repository; - -import javax.sql.DataSource; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.*; - -/** - * @author Jules Jacobsen - */ -@Repository -public class TadDao { - - private final Logger logger = LoggerFactory.getLogger(TadDao.class); - - @Autowired - private DataSource dataSource; - - public List getAllTads() { - try (Connection connection = dataSource.getConnection(); - PreparedStatement preparedStatement = connection.prepareStatement("select CHROMOSOME as chr, START as start, \"end\" as end, ENTREZID as geneId, SYMBOL as geneSymbol from tad"); - ResultSet rs = preparedStatement.executeQuery()) { - return createTads(rs); - - } catch (SQLException e) { - logger.error("Error executing topologically associated domain query: ", e); - } - return Collections.emptyList(); - } - - private List createTads(ResultSet rs) throws SQLException { - List tads = new ArrayList<>(); - int chr = 0; - int start = 0; - int end = 0; - Map geneIdentifiers = new LinkedHashMap<>(); - while (rs.next()) { - int currentChr = rs.getInt("chr"); - int currentStart = rs.getInt("start"); - int currentEnd = rs.getInt("end"); - String geneSymbol = rs.getString("geneSymbol"); - Integer geneId = rs.getInt("geneId"); - - //first row - if (chr == 0 && start == 0 && end == 0) { - chr = currentChr; - start = currentStart; - end = currentEnd; - geneIdentifiers.put(geneSymbol, geneId); - continue; - } - //TADs probably don't overlap, but this is biology so at least one probably will. - if (currentChr != chr || currentStart != start || currentEnd != end) { - TopologicalDomain previousTad = new TopologicalDomain(chr, start, end, geneIdentifiers); - tads.add(previousTad); - geneIdentifiers = new LinkedHashMap<>(); - } - chr = currentChr; - start = currentStart; - end = currentEnd; - geneIdentifiers.put(geneSymbol, geneId); - } - TopologicalDomain finalTad = new TopologicalDomain(chr, start, end, geneIdentifiers); - tads.add(finalTad); - - return tads; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/ZebraFishPhenotypeOntologyDao.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/ZebraFishPhenotypeOntologyDao.java deleted file mode 100644 index 57ad26595..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/dao/ZebraFishPhenotypeOntologyDao.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.Collections; -import java.util.Set; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Repository; - -/** - * - * @author Jules Jacobsen - */ -@Repository -public class ZebraFishPhenotypeOntologyDao implements OntologyDao { - - private static final Logger logger = LoggerFactory.getLogger(ZebraFishPhenotypeOntologyDao.class); - - @Autowired - private DataSource dataSource; - - private final OntologyDaoResultSetProcessor rsProcessor = new OntologyDaoResultSetProcessor(); - - @Override - public Set getAllTerms() { - String query = "SELECT zp_id as id, zp_term as term FROM zp"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement ontologyTermsStatement = connection.prepareStatement(query); - ResultSet rs = ontologyTermsStatement.executeQuery()) { - - return rsProcessor.processOntologyTermsResultSet(rs); - - } catch (SQLException e) { - logger.error("Unable to execute query '{}' for ZPO terms", query, e); - } - return Collections.emptySet(); - } - - @Override - public Set getPhenotypeMatchesForHpoTerm(PhenotypeTerm hpoTerm) { - String mappingQuery = "SELECT simj, ic, score, zp_id AS hit_id, zp_term AS hit_term, lcs_id, lcs_term FROM hp_zp_mappings WHERE hp_id = ?"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement ps = setQueryHpId(connection, mappingQuery, hpoTerm); - ResultSet rs = ps.executeQuery()) { - - return rsProcessor.processOntologyTermMatchResultSet(rs, hpoTerm); - - } catch (SQLException e) { - logger.error("Unable to execute query '{}' for HP-ZP match terms", mappingQuery, e); - } - return Collections.emptySet(); - } - - private PreparedStatement setQueryHpId(final Connection connection, String mappingQuery, PhenotypeTerm hpoTerm) throws SQLException { - PreparedStatement ps = connection.prepareStatement(mappingQuery); - ps.setString(1, hpoTerm.getId()); - return ps; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/GeneFactory.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/GeneFactory.java deleted file mode 100644 index 95fc2feb4..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/GeneFactory.java +++ /dev/null @@ -1,87 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import java.util.*; - -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.reference.TranscriptModel; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import static java.util.stream.Collectors.toList; - -/** - * Creates a {@code List} of {@code Gene} from a {@code List} of - * {@code VariantEvaluation}. - * - * @author Jules Jacobsen - */ -public class GeneFactory { - - private static final Logger logger = LoggerFactory.getLogger(GeneFactory.class); - - /** - * Returns a list of {@code Gene} objects created from the supplied list of - * {@code VariantEvaluation}. This list will be complete and contain all - * genes regardless of whether the {@code VariantEvaluation} has passed any - * filters or not. - * - * @param variantEvaluations - * @return - */ - public List createGenes(List variantEvaluations) { - //Record the genes we have seen before. - Map geneMap = new HashMap<>(); - - for (VariantEvaluation variantEvaluation : variantEvaluations) { - String geneSymbol = variantEvaluation.getGeneSymbol(); - int geneId = variantEvaluation.getEntrezGeneId(); - if (geneSymbol != null && !".".equals(geneSymbol)) { - // Off target variants do not have gene-symbols. - // This if avoids null pointers - if (geneMap.containsKey(geneSymbol)) { - Gene gene = geneMap.get(geneSymbol); - gene.addVariant(variantEvaluation); - } else { - Gene gene = new Gene(geneSymbol, geneId); - gene.addVariant(variantEvaluation); - geneMap.put(geneSymbol, gene); - } - } - } - logger.info("Made {} genes from {} variants", geneMap.values().size(), variantEvaluations.size()); - return new ArrayList<>(geneMap.values()); - } - - public List createKnownGenes(JannovarData jannovarData ) { - int approxKnownGenes = 23000; - Set knownGenes = new HashSet<>(approxKnownGenes); - for (String geneSymbol : jannovarData.getTmByGeneSymbol().keySet()) { - String geneId = "-1"; - Collection transcriptModels = jannovarData.getTmByGeneSymbol().get(geneSymbol); - for (TranscriptModel transcriptModel : transcriptModels) { - if (transcriptModel != null && transcriptModel.getGeneID() != null && !transcriptModel.getGeneID().equals("null")) { - // The gene ID is of the form "${NAMESPACE}${NUMERIC_ID}" where "NAMESPACE" is "ENTREZ" - // for UCSC. At this point, there is a hard dependency on using the UCSC database. - geneId = transcriptModel.getGeneID().substring("ENTREZ".length()); - } - } - Gene gene = new Gene(geneSymbol, Integer.parseInt(geneId)); - knownGenes.add(gene); - if (geneId.equals("-1")) { - logger.debug("No geneId associated with gene symbol {} geneId set to {}", gene.getGeneSymbol(), gene.getEntrezGeneID()); - } - } - - logger.info("Created {} known genes.", knownGenes.size()); - return knownGenes.stream().collect(toList()); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/PedigreeFactory.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/PedigreeFactory.java deleted file mode 100644 index 78aafda34..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/PedigreeFactory.java +++ /dev/null @@ -1,237 +0,0 @@ - -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.jannovar.pedigree.Disease; -import de.charite.compbio.jannovar.pedigree.PedFileContents; -import de.charite.compbio.jannovar.pedigree.PedFileReader; -import de.charite.compbio.jannovar.pedigree.PedParseException; -import de.charite.compbio.jannovar.pedigree.PedPerson; -import de.charite.compbio.jannovar.pedigree.Pedigree; -import de.charite.compbio.jannovar.pedigree.PedigreeExtractor; -import de.charite.compbio.jannovar.pedigree.Person; -import de.charite.compbio.jannovar.pedigree.Sex; - -import java.io.IOException; -import java.nio.file.Path; -import java.util.*; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import com.google.common.collect.ImmutableList; - -import static java.util.stream.Collectors.partitioningBy; -import static java.util.stream.Collectors.toList; - -/** - * Handles the creation of Pedigree objects. - * - * @author Jules Jacobsen - */ -public class PedigreeFactory { - - private static final Logger logger = LoggerFactory.getLogger(PedigreeFactory.class); - - public static final String DEFAULT_SAMPLE_NAME = "unnamed sample"; - - /** - * The Exomiser can perform filtering of VCF data according to pedigree - * data. If the VCF file contains multiple samples, then the Exomiser - * requires a corresponding PED file to be able to analyze the inheritance - * pattern of the variants. The PED file is parsed by the PEDFileParser - * class in jannovar. This results in a Pedigree object that is used to do - * the pedigree analysis. The VCF Parser from Jannovar creates Genotype - * objects for each variant in the VCF file, and these can be compared to - * the pedigree information. The {@link de.charite.compbio.exomiser.core.model.Gene Gene} class - * coordinates this analysis. - *

- * Note that for single-sample VCF files, a Pedigree object is still - * constructed, and we assume that the sample is from an affected person. - * - * @param pedigreeFilePath - * @param sampleData - * @return - */ - public Pedigree createPedigreeForSampleData(Path pedigreeFilePath, SampleData sampleData) { - List sampleNames = sampleData.getSampleNames(); - int numberOfSamples = sampleData.getNumberOfSamples(); - switch (numberOfSamples) { - case 0: - throw new PedigreeCreationException("No data present in sampleData"); - case 1: - return createSingleSamplePedigree(sampleNames); - default: - return createMultiSamplePedigree(pedigreeFilePath, sampleNames); - } - } - - private Pedigree createSingleSamplePedigree(List sampleNames) { - String sampleName = DEFAULT_SAMPLE_NAME; - if (!sampleNames.isEmpty()) { - sampleName = sampleNames.get(0); - } - - logger.info("Creating single-sample pedigree for {}", sampleName); - final Person person = new Person(sampleName, null, null, Sex.UNKNOWN, Disease.AFFECTED); - return new Pedigree("family", ImmutableList.of(person)); - } - - private Pedigree createMultiSamplePedigree(Path pedigreeFilePath, List sampleNames) { - logger.info("Creating multi-sample pedigree for VCF containing {} samples", sampleNames.size()); - logger.info("Reading pedigree file: {}", pedigreeFilePath); - final PedFileContents pedFileContents = checkAndBuildPedFileContents(pedigreeFilePath); - final Pedigree pedigree = checkNamesAndBuildPedigree(sampleNames, pedFileContents); - logger.info("Created pedigree for family {} comprising {} members {}", pedigree.getName(), pedigree.getMembers().size(), pedigree.getNames()); - return pedigree; - } - - private PedFileContents checkAndBuildPedFileContents(Path pedigreeFilePath) { - final PedFileContents pedFileContents = readPedFileContents(pedigreeFilePath); - checkPedFileContentsContainsSingleFamily(pedFileContents); - return pedFileContents; - } - - private PedFileContents readPedFileContents(Path pedigreeFilePath) { - checkPedigreePathIsNotNull(pedigreeFilePath); - try { - PedFileContents pedFileContents = new PedFileReader(pedigreeFilePath.toFile()).read(); - if (pedFileContents.getIndividuals().isEmpty()) { - //might never happen, but anyway... - throw new PedigreeCreationException("PED file contains no valid individuals - Check PED file format."); - } - return pedFileContents; - - } catch (PedParseException e) { - throw new PedigreeCreationException("Problem parsing the PED file - Check PED file format, fields should be TAB separated.", e); - } catch (IOException e) { - throw new PedigreeCreationException("Problem reading the PED file", e); - } - } - - private void checkPedigreePathIsNotNull(Path pedigreeFilePath) throws PedigreeCreationException { - if (pedigreeFilePath == null) { - logger.error("PED file must be be provided for multi-sample VCF files."); - //terminate the program - we really need one of these. - throw new PedigreeCreationException("Pedigree file path cannot be null.", new NullPointerException()); - } - } - - private void checkPedFileContentsContainsSingleFamily(PedFileContents pedFileContents) throws PedigreeCreationException { - List familyNames = pedFileContents.getIndividuals().stream().map(PedPerson::getPedigree).distinct().collect(toList()); - if (familyNames.size() > 1) { - throw new PedigreeCreationException("PED file must contain only one family, found " + familyNames.size() + ": " + familyNames + ". Please provide PED file containing only the proband family matching supplied HPO terms."); - } - } - - private Pedigree checkNamesAndBuildPedigree(List sampleNames, PedFileContents pedFileContents) { - //This step is important - we want a catastrophic failure here is the PED and VCF file sample names don't match in case the inheritance mode analysis goes wrong later. - //If we can be assured that this isn't a problem fro Jannovar to check this method can be removed. - checkPedFileContentsMatchesSampleNames(pedFileContents, sampleNames); - - return buildPedigree(pedFileContents); - } - - - private void checkPedFileContentsMatchesSampleNames(PedFileContents pedFileContents, List sampleNames) throws PedigreeCreationException { - logger.debug("Sample names from VCF: {}", sampleNames); - logger.debug("Individuals from PED: {}", pedFileContents.getNameToPerson().keySet()); - logger.debug("Matching VCF sample names with PED individuals..."); - //yes, we could just do a set comparison here, but we want to throw an exception once we've logged all the unrepresented individuals for the user. - boolean namesMismatch = false; - if(sampleNamesMisMatchPedigreeMembers(pedFileContents, sampleNames)) { - namesMismatch = true; - } - //need to to an all vs all comparison because there could be unrepresented elements in both PED and VCF e.g. [Eva, {Adam, Seth], Marge, Homer} - if (pedigreeMembersMisMatchSampleNames(pedFileContents, sampleNames)){ - namesMismatch = true; - } - - if(namesMismatch) { - throw new PedigreeCreationException("VCF - PED mismatch. There are mismatched individuals in the PED and/or VCF file. Please ensure names in both VCF and PED files are identical."); - } - } - - private boolean pedigreeMembersMisMatchSampleNames(PedFileContents pedFileContents, List sampleNames) { - Map> people = pedFileContents.getIndividuals().stream().collect(partitioningBy(pedPerson -> sampleNames.contains(pedPerson.getName()))); - - List representedPeople = people.get(true); - if (representedPeople.isEmpty()) { - throw new PedigreeCreationException("VCF - PED mismatch. None of the individuals in the PED match any of the sample names in the VCF"); - } - - boolean namesMismatch = false; - List unrepresentedPeople = people.get(false); - if (unrepresentedPeople.size() > 0) { - namesMismatch = true; - unrepresentedPeople.forEach( - person -> logger.error("Individual {} from family {} present in PED but not in VCF. Please ensure names in VCF match those in PED.", person.getName(), person.getPedigree()) - ); - } - return namesMismatch; - } - - private boolean sampleNamesMisMatchPedigreeMembers(PedFileContents pedFileContents, List sampleNames) { - Map pedPeople = pedFileContents.getNameToPerson(); - Map> samples = sampleNames.stream().collect(partitioningBy(name -> pedPeople.containsKey(name))); - - List representedSamples = samples.get(true); - if (representedSamples.isEmpty()) { - throw new PedigreeCreationException("VCF - PED mismatch. None of the sample names in the VCF match any of the individuals in the PED"); - } - - boolean namesMismatch = false; - List unrepresentedSamples = samples.get(false); - if (unrepresentedSamples.size() > 0) { - namesMismatch = true; - unrepresentedSamples.forEach(name -> logger.error("Individual {} present in VCF but not in PED file. Please ensure names in VCF match those in PED.", name)); - } - return namesMismatch; - } - - private Pedigree buildPedigree(PedFileContents pedFileContents) { - final String name = pedFileContents.getIndividuals().get(0).getPedigree(); - try { - logger.debug("Building pedigree for family {}", name); - return new Pedigree(name, new PedigreeExtractor(name, pedFileContents).run()); - } catch (PedParseException e) { - throw new PedigreeCreationException("Problem parsing the PED file.", e); - } - } - - public class PedigreeCreationException extends RuntimeException { - - private static final long serialVersionUID = 1L; - - public PedigreeCreationException() { - super("Error creating Pedigree"); - } - - public PedigreeCreationException(String message) { - super(message); - } - - public PedigreeCreationException(String message, Exception e) { - super(message, e); - } - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/SampleDataFactory.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/SampleDataFactory.java deleted file mode 100644 index 43a305378..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/SampleDataFactory.java +++ /dev/null @@ -1,154 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.pedigree.Pedigree; -import htsjdk.variant.vcf.VCFFileReader; -import htsjdk.variant.vcf.VCFHeader; - -import java.nio.file.Path; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; - -/** - * Handles creating the {@code de.charite.compbio.exomiser.common.SampleData} - * from a VCF file and an optional pedigree file. This will annotate the - * variants and produce a fully functional {@code SampleData} object for - * analysis. - * - * @author Jules Jacobsen - */ -@Component -public class SampleDataFactory { - - private static final Logger logger = LoggerFactory.getLogger(SampleDataFactory.class); - - @Autowired - private VariantFactory variantFactory; - @Autowired - private JannovarData jannovarData; - - private final PedigreeFactory pedigreeFactory; - private final GeneFactory geneFactory; - - public SampleDataFactory() { - pedigreeFactory = new PedigreeFactory(); - geneFactory = new GeneFactory(); - } - - public SampleDataFactory(VariantFactory variantFactory, JannovarData jannovarData) { - this.variantFactory = variantFactory; - this.jannovarData = jannovarData; - pedigreeFactory = new PedigreeFactory(); - geneFactory = new GeneFactory(); - } - - public VariantFactory getVariantFactory() { - return variantFactory; - } - - public JannovarData getJannovarData() { - return jannovarData; - } - - /** - * Creates a SampleData object from the given VCF and a Pedigree files. This method will eagerly read in all variants - * from the VCF file, annotate them, create Genes from the variants and set these in the SampleData. Due to the eager - * creation of VariantEvaluations this is a poor choice for analysing whole genomes if RAM is limited. - * - * @param vcfFilePath - * @param pedigreeFilePath - * @return A fully populated SampleData object with the VCF meta-data, annotated VariantEvaluations and Genes. - */ - public SampleData createSampleData(Path vcfFilePath, Path pedigreeFilePath) { - SampleData sampleData = createSampleDataWithoutVariantsOrGenes(vcfFilePath, pedigreeFilePath); - - // load and annotate VCF data - //Issue #56 This will load ALL the VCF data into memory and hold it in the sampleData - //this requires a lot of RAM for large exomes and especially whole genomes. We could have some way of - //applying the variant filters at this stage. Make a FilteringVariantFactory? - List variantEvaluations = variantFactory.createVariantEvaluations(vcfFilePath); - sampleData.setVariantEvaluations(variantEvaluations); - - //Don't try and create the Genes before annotating the Variants otherwise you'll have a single gene with all the variants in it... - List geneList = createGenes(variantEvaluations); - sampleData.setGenes(geneList); - - return sampleData; - } - - /** - * Creates a bare-bones SampleData object containing VCF metadata and Pedigree. The VariantEvaluations and Genes - * will be empty. - * - * @param vcfFilePath - * @param pedigreeFilePath - * @return A bare-bones SampleData object without VariantEvaluations or Genes. - */ - public SampleData createSampleDataWithoutVariantsOrGenes(Path vcfFilePath, Path pedigreeFilePath) { - logger.info("Creating sample data from VCF and PED files: {}, {}", vcfFilePath, pedigreeFilePath); - SampleData sampleData = new SampleData(vcfFilePath, pedigreeFilePath); - - setSampleDataVcfHeader(sampleData, vcfFilePath); - - Pedigree pedigree = createPedigree(pedigreeFilePath, sampleData); - sampleData.setPedigree(pedigree); - - return sampleData; - } - - private SampleData setSampleDataVcfHeader(SampleData sampleData, Path vcfFilePath) { - VCFFileReader vcfReader = new VCFFileReader(vcfFilePath.toFile(), false); // false => do not require index - VCFHeader vcfHeader = vcfReader.getFileHeader(); - - // create sample information from header (names of samples) - sampleData.setVcfHeader(vcfHeader); - sampleData.setSampleNames(vcfHeader.getGenotypeSamples()); - sampleData.setNumberOfSamples(vcfHeader.getNGenotypeSamples()); - - return sampleData; - } - - public Pedigree createPedigree(Path pedigreeFilePath, SampleData sampleData) { - return pedigreeFactory.createPedigreeForSampleData(pedigreeFilePath, sampleData); - } - - public List createGenes(List variantEvaluations) { - return geneFactory.createGenes(variantEvaluations); - } - - public List createKnownGenes() { - return geneFactory.createKnownGenes(jannovarData); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantAnnotator.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantAnnotator.java deleted file mode 100644 index 47e7db79b..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantAnnotator.java +++ /dev/null @@ -1,90 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import htsjdk.variant.variantcontext.VariantContext; - -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.jannovar.annotation.VariantAnnotations; -import de.charite.compbio.jannovar.htsjdk.InvalidCoordinatesException; -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import de.charite.compbio.jannovar.data.JannovarData; -import java.util.Collections; - -/** - * Given a {@link VariantAnnotator}, build a {@link Variant} for each - * alternative allele. - * - * Uses the {@link VariantContextAnnotator} class of the Jannovar-HTSJDK bridge. - * - * @author Jules Jacobsen - */ -@Deprecated -public class VariantAnnotator { - - private static final Logger logger = LoggerFactory.getLogger(VariantAnnotator.class); - - /** - * tool for obtaining annotations for the {@link VariantContext} objects - */ - private final VariantContextAnnotator annotator; - - public VariantAnnotator(VariantContextAnnotator variantContextAnnotator) { - this.annotator = variantContextAnnotator; - } - - public VariantAnnotator(JannovarData jannovarData) { - this.annotator = new VariantContextAnnotator(jannovarData.getRefDict(), jannovarData.getChromosomes()); - } - - public VariantContextAnnotator getVariantContextAnnotator() { - return annotator; - } - - /** - * Returns a list of variants of known reference. If a VariantContext has no - * know reference on the genome an empty list will be returned. - * - * @param variantContext {@link VariantContext} to get {@link Variant} objects for - * @return one {@link Variant} object for each alternative allele in vc. - */ - public List buildVariantAnnotations(VariantContext variantContext) { - try { - //builds one annotation list for each alternative allele - return annotator.buildAnnotations(variantContext); - } catch (InvalidCoordinatesException ex) { - //Not all genes can be assigned to a chromosome, so these will fail here. - //Should we report these? They will not be used in the analysis or appear in the output anywhere. - logger.trace("Cannot build annotations for VariantContext {} {} {}: {}", variantContext.getContig(), variantContext.getStart(), variantContext.getAlleles(), ex); - } - return Collections.emptyList(); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantDataService.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantDataService.java deleted file mode 100644 index 5678273f8..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantDataService.java +++ /dev/null @@ -1,51 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.*; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.jannovar.annotation.VariantEffect; - -import java.util.List; -import java.util.Set; - -/** - * - * @author Jules Jacobsen - */ -public interface VariantDataService { - - public FrequencyData getVariantFrequencyData(Variant variant, Set frequencySources); - - public PathogenicityData getVariantPathogenicityData(Variant variant, Set pathogenicitySources); - - public List getRegulatoryFeatures(); - - public List getTopologicallyAssociatedDomains(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceImpl.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceImpl.java deleted file mode 100644 index 91a90a7b9..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceImpl.java +++ /dev/null @@ -1,132 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - - -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.dao.*; -import de.charite.compbio.exomiser.core.model.RegulatoryFeature; -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import java.util.ArrayList; -import java.util.List; -import java.util.Set; -import static java.util.stream.Collectors.toSet; -import javax.annotation.Resource; - -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Service; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -@Service -public class VariantDataServiceImpl implements VariantDataService { - - private static final Logger logger = LoggerFactory.getLogger(VariantDataServiceImpl.class); - - @Autowired - private FrequencyDao frequencyDao; - @Autowired - private PathogenicityDao pathogenicityDao; - @Resource(name = "caddDao") - private CaddDao caddDao; - @Resource(name = "remmDao") - private RemmDao remmDao; - @Autowired - private RegulatoryFeatureDao regulatoryFeatureDao; - @Autowired - private TadDao tadDao; - - @Override - public FrequencyData getVariantFrequencyData(Variant variant, Set frequencySources) { - FrequencyData allFrequencyData = frequencyDao.getFrequencyData(variant); - return frequencyDataFromSpecifiedSources(allFrequencyData, frequencySources); - } - - protected FrequencyData frequencyDataFromSpecifiedSources(FrequencyData allFrequencyData, Set frequencySources) { - Set wanted = allFrequencyData.getKnownFrequencies().stream() - .filter(frequency -> frequencySources.contains(frequency.getSource())) - .collect(toSet()); - if (allFrequencyData.getRsId() == null && wanted.isEmpty()) { - return FrequencyData.EMPTY_DATA; - } - return new FrequencyData(allFrequencyData.getRsId(), wanted); - } - - @Override - public PathogenicityData getVariantPathogenicityData(Variant variant, Set pathogenicitySources) { - //OK, this is a bit stupid, but if no sources are defined we're not going to bother checking for data - if (pathogenicitySources.isEmpty()) { - return PathogenicityData.EMPTY_DATA; - } - //TODO: ideally we'd have some sort of compact, high-performance document store for this sort of data rather than several different datasources to query and ship. - List allPathScores = new ArrayList<>(); - final VariantEffect variantEffect = variant.getVariantEffect(); - //Polyphen, Mutation Taster and SIFT are all trained on missense variants - this is what is contained in the original variant table, but we shouldn't know that. - if (variantEffect == VariantEffect.MISSENSE_VARIANT) { - PathogenicityData missenseScores = pathogenicityDao.getPathogenicityData(variant); - allPathScores.addAll(missenseScores.getPredictedPathogenicityScores()); - } - else if (pathogenicitySources.contains(PathogenicitySource.REMM) && variant.isNonCodingVariant()) { - //REMM is trained on non-coding regulatory bits of the genome, this outperforms CADD for non-coding variants - PathogenicityData nonCodingScore = remmDao.getPathogenicityData(variant); - allPathScores.addAll(nonCodingScore.getPredictedPathogenicityScores()); - } - - //CADD does all of it although is not as good as REMM for the non-coding regions. - if (pathogenicitySources.contains(PathogenicitySource.CADD)) { - PathogenicityData caddScore = caddDao.getPathogenicityData(variant); - allPathScores.addAll(caddScore.getPredictedPathogenicityScores()); - } - - return pathDataFromSpecifiedDataSources(allPathScores, pathogenicitySources); - } - - protected PathogenicityData pathDataFromSpecifiedDataSources(List allPathScores, Set pathogenicitySources) { - Set wanted = allPathScores.stream() - .filter(pathogenicity -> pathogenicitySources.contains(pathogenicity.getSource())) - .collect(toSet()); - if (wanted.isEmpty()) { - return PathogenicityData.EMPTY_DATA; - } - return new PathogenicityData(wanted); - } - - @Override - public List getRegulatoryFeatures() { - return regulatoryFeatureDao.getRegulatoryFeatures(); - } - - @Override - public List getTopologicallyAssociatedDomains() { - return tadDao.getAllTads(); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantFactory.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantFactory.java deleted file mode 100644 index 4bfaca222..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/factories/VariantFactory.java +++ /dev/null @@ -1,340 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.annotation.Annotation; -import de.charite.compbio.jannovar.annotation.VariantAnnotations; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.htsjdk.InvalidCoordinatesException; -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import de.charite.compbio.jannovar.reference.GenomeVariant; -import de.charite.compbio.jannovar.reference.TranscriptModel; -import htsjdk.variant.variantcontext.*; -import htsjdk.variant.vcf.VCFFileReader; - -import java.nio.file.Path; -import java.util.Collections; -import java.util.List; -import java.util.Optional; -import java.util.concurrent.atomic.AtomicInteger; -import java.util.function.Function; -import java.util.function.Predicate; -import java.util.stream.Stream; -import java.util.stream.StreamSupport; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; - -import static java.util.stream.Collectors.toList; - -/** - * Produces Variants from VCF files. - * - * @author Jules Jacobsen - */ -public class VariantFactory { - - private static final Logger logger = LoggerFactory.getLogger(VariantFactory.class); - - private final VariantContextAnnotator variantAnnotator; - - //in cases where a variant cannot be positioned on a chromosome we're going to use 0 in order to fulfil the - //requirement of a variant having an integer chromosome - private final int UNKNOWN_CHROMOSOME = 0; - - /** - * @deprecated Use alternative constructor requiring JannovarData - * @param variantAnnotator - */ - @Deprecated - public VariantFactory(VariantAnnotator variantAnnotator) { - this.variantAnnotator = variantAnnotator.getVariantContextAnnotator(); - } - - @Autowired - public VariantFactory(JannovarData jannovarData) { - this.variantAnnotator = new VariantContextAnnotator(jannovarData.getRefDict(), jannovarData.getChromosomes()); - } - - public List createVariantContexts(Path vcfPath) { - logger.info("Loading variants..."); - try (Stream variantContextStream = streamVariantContexts(vcfPath)) { - List records = variantContextStream.collect(toList()); - logger.info("Created {} variant records from file {}", records.size(), vcfPath); - return records; - } - } - - public Stream streamVariantContexts(Path vcfPath) { - logger.info("Streaming variants from file {}", vcfPath); - VCFFileReader vcfReader = new VCFFileReader(vcfPath.toFile(), false); // false => do not require index - Iterable variantIterable = () -> vcfReader.iterator(); - boolean runParallel = false; - return StreamSupport.stream(variantIterable.spliterator(), runParallel); - } - - public List createVariantEvaluations(Path vcfPath) { - Stream variantEvaluationStream = streamVariantEvaluations(vcfPath); - List variantEvaluations = variantEvaluationStream.collect(toList()); - variantEvaluationStream.close(); - return variantEvaluations; - } - - public Stream streamVariantEvaluations(Path vcfPath) { - //note - VariantContexts with with unknown references will not create a Variant. - final AtomicInteger variantRecords = new AtomicInteger(0); - final AtomicInteger unannotatedVariants = new AtomicInteger(0); - final AtomicInteger annotatedVariants = new AtomicInteger(0); - - Stream variantEvaluationStream = streamVariantContexts(vcfPath) - .map(logVariantContextCount(variantRecords)) - .flatMap(streamVariantEvaluations()) - .map(logAnnotatedVariantCount(unannotatedVariants, annotatedVariants)); - - logger.info("Annotating variant records, trimming sequences and normalising positions..."); - return variantEvaluationStream - .onClose(() -> { - if (unannotatedVariants.get() > 0) { - logger.info("Processed {} variant records into {} single allele variants, {} are missing annotations, most likely due to non-numeric chromosome designations", variantRecords.get(), annotatedVariants.get(), unannotatedVariants.get()); - } else { - logger.info("Processed {} variant records into {} single allele variants", variantRecords.get(), annotatedVariants.get()); - } - }); - } - - public Stream streamVariantEvaluations(Stream variantContextStream) { - return variantContextStream.flatMap(streamVariantEvaluations()); - } - - private Function logVariantContextCount(AtomicInteger variantRecords) { - return variantContext -> { - variantRecords.incrementAndGet(); - return variantContext; - }; - } - - private Function logAnnotatedVariantCount(AtomicInteger unannotatedVariants, AtomicInteger annotatedVariants) { - return variantEvaluation -> { - if (variantEvaluation.hasAnnotations()) { - annotatedVariants.incrementAndGet(); - } else { - unannotatedVariants.incrementAndGet(); - } - return variantEvaluation; - }; - } - - /** - * An Exomiser VariantEvaluation is a single-allele variant whereas the VariantContext can have multiple alleles. - * This means that a multi allele Variant record in a VCF can result in several VariantEvaluations - one for each - * alternate allele. - */ - private Function> streamVariantEvaluations() { - return variantContext -> { - final List variantAlleleAnnotations = buildVariantAnnotations(variantContext); -// logger.info("Making variantEvaluations for alternate alleles {}:{} {} {}", variantContext.getContig(), variantContext.getStart(), variantContext.getAlleles(), variantContext.getGenotypes()); - return variantContext.getAlternateAlleles().stream() - .map(buildAlleleVariantEvaluation(variantContext, variantAlleleAnnotations)) - .filter(Optional::isPresent) - .map(Optional::get); - }; - } - - /** - * Returns a list of variants of known reference. If a VariantContext has no - * know reference on the genome an empty list will be returned. - * - * @param variantContext {@link VariantContext} to get {@link Variant} objects for - * @return one {@link Variant} object for each alternative allele in vc. - */ - public List buildVariantAnnotations(VariantContext variantContext) { - try { - synchronized (this) { - //builds one annotation list for each alternative allele - return variantAnnotator.buildAnnotations(variantContext); - } - } catch (InvalidCoordinatesException ex) { - //Not all genes can be assigned to a chromosome, so these will fail here. - //Should we report these? They will not be used in the analysis or appear in the output anywhere. - logger.trace("Cannot build annotations for VariantContext {} {} {}: {}", variantContext.getContig(), variantContext.getStart(), variantContext.getAlleles(), ex); - } - return Collections.emptyList(); - } - - private Function> buildAlleleVariantEvaluation(VariantContext variantContext, List variantAlleleAnnotations) { - return allele -> { - //alternate Alleles are always after the reference allele, which is 0 - int altAlleleId = variantContext.getAlleleIndex(allele) - 1; - //loggers are commented out as even using debug this adds considerable overhead when checking millions of variants -// logger.info("checking allele {} altAlleleId={}", allele, altAlleleId); - if (alleleIsObservedInGenotypes(allele, variantContext)) { -// logger.info("Alt allele {} observed in samples", variantContext.getAlternateAllele(altAlleleId)); - if (variantAlleleAnnotations.isEmpty()) { - return Optional.of(buildUnknownVariantEvaluation(variantContext, altAlleleId)); - } else { - VariantAnnotations variantAnnotations = variantAlleleAnnotations.get(altAlleleId); - return Optional.of(buildAnnotatedVariantEvaluation(variantContext, altAlleleId, variantAnnotations)); - } - } - return Optional.empty(); - }; - } - - private boolean alleleIsObservedInGenotypes(Allele allele, VariantContext variantContext) { - return variantContext.getGenotypes().stream().anyMatch(alleleObservedInGenotype(allele)); - } - - private Predicate alleleObservedInGenotype(Allele allele) { - return genotype -> genotype.getAlleles().stream().anyMatch(allele::equals); - } - - /** - * A basic VariantEvaluation for an alternative allele described by the - * VariantContext. These positions will not be trimmed or annotated by - * Jannovar. This method is only provided for completeness so that users can - * have a list of variants which were not used in any analyses. - * - * @param variantContext - * @param altAlleleId - * @return - */ - private VariantEvaluation buildUnknownVariantEvaluation(VariantContext variantContext, int altAlleleId) { - // Build the GenomeChange object. - final String chromosomeName = variantContext.getContig(); - final String ref = variantContext.getReference().getBaseString(); - final String alt = variantContext.getAlternateAllele(altAlleleId).getBaseString(); - final int pos = variantContext.getStart(); - - logger.trace("Building unannotated variant for {} {} {} {} - assigning to chromosome {}", chromosomeName, pos, ref, alt, UNKNOWN_CHROMOSOME); - return new VariantEvaluation.VariantBuilder(UNKNOWN_CHROMOSOME, pos, ref, alt) - .variantContext(variantContext) - .altAlleleId(altAlleleId) - .numIndividuals(variantContext.getNSamples()) - //quality is the only value from the VCF file directly required for analysis - .quality(variantContext.getPhredScaledQual()) - .chromosomeName(chromosomeName) - .build(); - } - - /** - * Creates a VariantEvaluation made from all the relevant bits of the - * VariantContext and VariantAnnotations for a given alternative allele. - * - * @param variantContext - * @param altAlleleId - * @param variantAnnotations - * @return - */ - protected VariantEvaluation buildAnnotatedVariantEvaluation(VariantContext variantContext, int altAlleleId, VariantAnnotations variantAnnotations) { - int chr = variantAnnotations.getChr(); - int pos = buildPos(variantAnnotations); - String ref = buildRef(variantAnnotations); - String alt = buildAlt(variantAnnotations); - - VariantEffect variantEffect = getVariantEffect(variantAnnotations, chr, pos); - GenomeVariant genomeVariant = variantAnnotations.getGenomeVariant(); - //Attention! highestImpactAnnotation can be null - Annotation highestImpactAnnotation = variantAnnotations.getHighestImpactAnnotation(); - - return new VariantEvaluation.VariantBuilder(chr, pos, ref, alt) - //HTSJDK derived data are only used for writing out the - //VCF/TSV-VARIANT formatted files - .variantContext(variantContext) - .altAlleleId(altAlleleId) - .numIndividuals(variantContext.getNSamples()) - //quality is the only value from the VCF file directly required for analysis - .quality(variantContext.getPhredScaledQual()) - //jannovar derived data - .chromosomeName(genomeVariant.getChrName()) - .isOffExome(variantEffect.isOffExome()) - .geneSymbol(buildGeneSymbol(highestImpactAnnotation)) - .geneId(buildGeneId(highestImpactAnnotation)) - .variantEffect(variantEffect) - .annotations(variantAnnotations.getAnnotations()) - .build(); - } - - private VariantEffect getVariantEffect(VariantAnnotations variantAnnotations, int chr, int pos) { - return variantAnnotations.getHighestImpactEffect(); - } - - /** - * Jannovar uses a zero-based coordinate system but currently exomiser uses - * a one-based system which matches what is seen in VCF files. We'll keep - * using a one-based system until zero-based becomes the norm. - * - * @param variantAnnotations - * @return - */ - private int buildPos(VariantAnnotations variantAnnotations) { - if (variantAnnotations.getRef().equals("")) { - return variantAnnotations.getPos(); - } else { - return variantAnnotations.getPos() + 1; - } - } - - private String buildRef(VariantAnnotations variantAnnotations) { - if (variantAnnotations.getRef().equals("")) { - return "-"; - } else { - return variantAnnotations.getRef(); - } - } - - private String buildAlt(VariantAnnotations variantAnnotations) { - if (variantAnnotations.getAlt().equals("")) { - return "-"; - } else { - return variantAnnotations.getAlt(); - } - } - - private int buildGeneId(Annotation annotation) { - if (annotation == null) { - return -1; - } - - final TranscriptModel transcriptModel = annotation.getTranscript(); - if (transcriptModel == null || transcriptModel.getGeneID() == null || transcriptModel.getGeneID().equals("null")) { - return -1; - } - // The gene ID is of the form "${NAMESPACE}${NUMERIC_ID}" where "NAMESPACE" is "ENTREZ" - // for UCSC. At this point, there is a hard dependency on using the UCSC database. - return Integer.parseInt(transcriptModel.getGeneID().substring("ENTREZ".length())); - } - - private String buildGeneSymbol(Annotation annotation) { - if (annotation == null || annotation.getGeneSymbol() == null) { - return "."; - } else { - return annotation.getGeneSymbol(); - } - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/AbstractFilterDataProvider.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/AbstractFilterDataProvider.java deleted file mode 100644 index 58f8997e4..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/AbstractFilterDataProvider.java +++ /dev/null @@ -1,73 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -/** - * Provides the base functionality for VariantFilterDataProviders. - * - * @author Jules Jacobsen - */ -public abstract class AbstractFilterDataProvider implements VariantFilterDataProvider { - - protected final VariantDataService variantDataService; - protected final VariantFilter variantFilter; - - /** - * Provides the base functionality for all VariantFilterDataProviders. - * - * @param variantDataService - * @param variantFilter - */ - AbstractFilterDataProvider(VariantDataService variantDataService, VariantFilter variantFilter) { - this.variantDataService = variantDataService; - this.variantFilter = variantFilter; - } - - /** - * Classes extending this class must provide the variantEvaluation with the - * implementation-specific data. - * - * @param variantEvaluation - */ - @Override - public abstract void provideVariantData(VariantEvaluation variantEvaluation); - - @Override - public VariantFilter getDecoratedFilter() { - return variantFilter; - } - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - provideVariantData(variantEvaluation); - return variantFilter.runFilter(variantEvaluation); - } - - @Override - public FilterType getFilterType() { - return variantFilter.getFilterType(); - } - - //TODO: is this a good idea to make this class 'invisible' like this? - @Override - public boolean equals(Object o) { - return variantFilter.equals(o); - } - - @Override - public int hashCode() { - return variantFilter.hashCode(); - } - - @Override - public String toString() { - return variantFilter.toString(); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/AbstractFilterResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/AbstractFilterResult.java deleted file mode 100644 index 4eecd869f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/AbstractFilterResult.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import java.util.Locale; -import java.util.Objects; - -/** - * - * @author Jules Jacobsen - */ -abstract class AbstractFilterResult implements FilterResult { - - private final FilterType filterType; - private final FilterResultStatus filterResultStatus; - - AbstractFilterResult(FilterType filterType, FilterResultStatus filterResultStatus) { - this.filterType = filterType; - this.filterResultStatus = filterResultStatus; - } - - @Override - public FilterType getFilterType() { - return filterType; - } - - @Override - public FilterResultStatus getResultStatus() { - return filterResultStatus; - } - - @Override - public boolean passedFilter() { - return filterResultStatus == FilterResultStatus.PASS; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 59 * hash + Objects.hashCode(this.filterType); - hash = 59 * hash + Objects.hashCode(this.filterResultStatus); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final AbstractFilterResult other = (AbstractFilterResult) obj; - if (this.filterType != other.filterType) { - return false; - } - return this.filterResultStatus == other.filterResultStatus; - } - - @Override - public String toString() { - return String.format(Locale.UK, "Filter=%s status=%s",filterType, filterResultStatus); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/BedFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/BedFilter.java deleted file mode 100644 index 7f86153ad..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/BedFilter.java +++ /dev/null @@ -1,107 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.Objects; -import java.util.Set; - -public class BedFilter implements VariantFilter { - - private static final FilterType filterType = FilterType.BED_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - /** - * A set of off-target variant types such as Intergenic that we will - * runFilter out from further consideration. - */ - private final Set targetGeneSymbols; - - /** - * A set of human gene symbols which the sample will be filtered against. - * @param geneSymbols - */ - public BedFilter(Set geneSymbols) { - this.targetGeneSymbols = geneSymbols; - } - - public Set getTargetGeneSymbols() { - return targetGeneSymbols; - } - - /** - * @return an integer constant (as defined in exomizer.common.Constants) - * that will act as a flag to generate the output HTML dynamically depending - * on the filters that the user has chosen. - */ - @Override - public FilterType getFilterType() { - return filterType; - } - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - - if (variantEvaluation.isOffExome()) { - return failsFilter; - } - String geneSymbol = variantEvaluation.getGeneSymbol(); - if (!targetGeneSymbols.contains(geneSymbol)) { - return failsFilter; - } - return passesFilter; - } - - protected FilterReport makeReport(Set nontargetGenes, int passed, int failed) { - - FilterReport report = new FilterReport(filterType, passed, failed); - - report.addMessage(String.format("Removed a total of %d off-target variants from further consideration", failed)); - - StringBuilder sb = new StringBuilder(); - - if (!nontargetGenes.isEmpty()) { - sb.append(String.format("Variants were found in %d off target genes: ", nontargetGenes.size())); - boolean notfirst = false; - for (String gene : nontargetGenes) { - if (notfirst) { - sb.append(", "); - } - notfirst = true; - sb.append(gene); - } - sb.append(". Variants in these off-target genes were not considered further in the analysis."); - report.addMessage(sb.toString()); - } - return report; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 73 * hash + Objects.hashCode(this.filterType); - hash = 73 * hash + Objects.hashCode(this.targetGeneSymbols); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final BedFilter other = (BedFilter) obj; - if (!Objects.equals(this.targetGeneSymbols, other.targetGeneSymbols)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "BedFilter{" + "targetGeneSymbols=" + targetGeneSymbols + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/EntrezGeneIdFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/EntrezGeneIdFilter.java deleted file mode 100644 index 8d9cf5a4e..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/EntrezGeneIdFilter.java +++ /dev/null @@ -1,76 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.Objects; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * VariantFilter to remove any variants belonging to genes not on a user-entered - * list of genes. - * - * Note: this could be done as a GeneFilter but will be most efficient to run as - * the first variantFilter - * - * @author Damian Smedley - * @author Jules Jacobsen - */ -public class EntrezGeneIdFilter implements VariantFilter { - - private static final Logger logger = LoggerFactory.getLogger(EntrezGeneIdFilter.class); - - private static final FilterType filterType = FilterType.ENTREZ_GENE_ID_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - private final Set genesToKeep; - - public EntrezGeneIdFilter(Set genesToKeep) { - this.genesToKeep = genesToKeep; - } - - public Set getGeneIds() { - return genesToKeep; - } - - @Override - public FilterType getFilterType() { - return filterType; - } - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - if (genesToKeep.contains(variantEvaluation.getEntrezGeneId())) { - return passesFilter; - } - return failsFilter; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 97 * hash + Objects.hashCode(EntrezGeneIdFilter.filterType); - hash = 97 * hash + Objects.hashCode(this.genesToKeep); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final EntrezGeneIdFilter other = (EntrezGeneIdFilter) obj; - return Objects.equals(this.genesToKeep, other.genesToKeep); - } - - @Override - public String toString() { - return "EntrezGeneIdFilter{" + "genesToKeep=" + genesToKeep + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FailFilterResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FailFilterResult.java deleted file mode 100644 index 7d98aff50..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FailFilterResult.java +++ /dev/null @@ -1,18 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -/** - * - * @author Jules Jacobsen - */ -public class FailFilterResult extends AbstractFilterResult { - - public FailFilterResult(FilterType filterType) { - super(filterType, FilterResultStatus.FAIL); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/Filter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/Filter.java deleted file mode 100644 index d6119364f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/Filter.java +++ /dev/null @@ -1,32 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.analysis.AnalysisStep; -import de.charite.compbio.exomiser.core.model.Filterable; - -/** - * - * @author Jules Jacobsen - * @param - */ -public interface Filter extends AnalysisStep { - - /** - * @return an integer constant (as defined in exomizer.common.Constants) - * that will act as a flag to generate the output HTML dynamically depending - * on the filters that the user has chosen. - */ - public FilterType getFilterType(); - - /** - * True or false depending on whether the {@code VariantEvaluation} passes the runFilter or not. - * - * @param filterable - * @return true if the {@code VariantEvaluation} passes the runFilter. - */ - public FilterResult runFilter(T filterable); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterReport.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterReport.java deleted file mode 100644 index 0af3f7f3e..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterReport.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import java.util.ArrayList; -import java.util.List; -import java.util.Objects; - -/** - * Handles the storage of reports from a filter. The report contains a list of - * messages from the filter about what happened during the filtering of a - * particular list of {@code VariantEvaluation}. - * - * @author Jules Jacobsen - */ -public class FilterReport { - - private final FilterType filterType; - - private final List messages; - - private final int passed; - - private final int failed; - - public FilterReport(FilterType filterType, int pass, int fail) { - this.filterType = filterType; - passed = pass; - failed = fail; - messages = new ArrayList<>(); - } - - public FilterType getFilterType() { - return filterType; - } - - public boolean addMessage(String message) { - return messages.add(message); - } - - public List getMessages() { - return messages; - } - - public boolean hasMessages() { - return !messages.isEmpty(); - } - - public int getPassed() { - return passed; - } - - public int getFailed() { - return failed; - } - - @Override - public int hashCode() { - int hash = 5; - hash = 97 * hash + Objects.hashCode(this.filterType); - hash = 97 * hash + Objects.hashCode(this.messages); - hash = 97 * hash + this.passed; - hash = 97 * hash + this.failed; - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final FilterReport other = (FilterReport) obj; - if (this.filterType != other.filterType) { - return false; - } - if (!Objects.equals(this.messages, other.messages)) { - return false; - } - if (this.passed != other.passed) { - return false; - } - if (this.failed != other.failed) { - return false; - } - return true; - } - - - @Override - public String toString() { - return String.format("FilterReport for %s: pass:%d fail:%d %s", filterType, passed, failed, messages); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterResult.java deleted file mode 100644 index bc2fee23c..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterResult.java +++ /dev/null @@ -1,17 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -/** - * A FilterResult object gets attached to each Variant object as a result of the - * filtering of the variants in the VCF file according to various criteria. - * - * @author Jules Jacobsen - */ -public interface FilterResult { - - public FilterType getFilterType(); - - public FilterResultStatus getResultStatus(); - - public boolean passedFilter(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterResultStatus.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterResultStatus.java deleted file mode 100644 index bc836d705..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterResultStatus.java +++ /dev/null @@ -1,15 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -/** - * Describes the states of a result - usually from Filtering. - * - * @author Jules Jacobsen - */ -public enum FilterResultStatus { - PASS, FAIL, NOT_RUN; -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterRunner.java deleted file mode 100644 index 8a08955af..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterRunner.java +++ /dev/null @@ -1,35 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.Filterable; -import java.util.List; - -/** - * Generic interface for classes which handle running - * {@code de.charite.compbio.exomiser.core.model.Filter} over - * {@code de.charite.compbio.exomiser.core.model.Filterable} objects. - * - * @author Jules Jacobsen - * @param - * @param - */ -public interface FilterRunner { - - /** - * Runs the {@code de.charite.compbio.exomiser.core.model.Filterable} - * objects through the specified List of - * {@code de.charite.compbio.exomiser.core.model.Filter} - * - * @param filters - * @param filterables - * @return - */ - public List run(List filters, List filterables); - - public List run(T filter, List filterables); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterSettings.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterSettings.java deleted file mode 100644 index 883713176..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterSettings.java +++ /dev/null @@ -1,34 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.Set; - -/** - * Settings parameters required by the filters. - * - * @author Jules Jacobsen - */ -public interface FilterSettings { - - public float getMaximumFrequency(); - - public float getMinimumQuality(); - - public GeneticInterval getGeneticInterval(); - - public boolean keepOffTargetVariants(); - - public boolean removeKnownVariants(); - - public boolean removePathFilterCutOff(); - - public ModeOfInheritance getModeOfInheritance(); - - public Set getGenesToKeep(); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterType.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterType.java deleted file mode 100644 index 8f20bd84d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterType.java +++ /dev/null @@ -1,55 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -/** - * This is a simple class of enumerated constants that describe the type of - * filtering that was applied to a Gene/Variant. This class is placed in the - * jannovar hierarchy for now because it is intertwined with Variant. - * - * @author Peter Robinson - * @author Jules Jacobsen - * @version 0.05 (10 January, 2014) - */ -public enum FilterType { - - QUALITY_FILTER, - INTERVAL_FILTER, - ENTREZ_GENE_ID_FILTER, - PATHOGENICITY_FILTER, - REGULATORY_FEATURE_FILTER, - FREQUENCY_FILTER, - KNOWN_VARIANT_FILTER, - VARIANT_EFFECT_FILTER, - INHERITANCE_FILTER, - BED_FILTER, - PRIORITY_SCORE_FILTER; - - @Override - public String toString() { - switch (this) { - case ENTREZ_GENE_ID_FILTER: - return "Genes to keep"; - case QUALITY_FILTER: - return "Quality"; - case INTERVAL_FILTER: - return "Interval"; - case PATHOGENICITY_FILTER: - return "Pathogenicity"; - case KNOWN_VARIANT_FILTER: - return "Known variant"; - case FREQUENCY_FILTER: - return "Frequency"; - case VARIANT_EFFECT_FILTER: - return "Target"; //Exome target region - case REGULATORY_FEATURE_FILTER: - return "Regulatory Feature"; - case INHERITANCE_FILTER: - return "Inheritance"; - case BED_FILTER: - return "Gene panel target region (Bed filter)"; - case PRIORITY_SCORE_FILTER: - return "Gene priority score"; - default: - return "Unidentified Filter"; - } - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FrequencyDataProvider.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FrequencyDataProvider.java deleted file mode 100644 index 8b54261fc..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FrequencyDataProvider.java +++ /dev/null @@ -1,41 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; - -import java.util.EnumSet; -import java.util.Set; - -/** - * Decorator implementation to provide variant frequency data to to the variant - * just before it is needed by the decorated VariantFilter. - * - * @author Jules Jacobsen - */ -public class FrequencyDataProvider extends AbstractFilterDataProvider { - - private final Set frequencySources; - - public FrequencyDataProvider(VariantDataService variantDataService, Set frequencySources, VariantFilter variantFilter) { - super(variantDataService, variantFilter); - - if (frequencySources.isEmpty()) { - this.frequencySources = EnumSet.noneOf(FrequencySource.class); - } else { - this.frequencySources = EnumSet.copyOf(frequencySources); - } - } - - @Override - public void provideVariantData(VariantEvaluation variantEvaluation) { - //check there are no frequencies first - this may be genuine, or possibly the variant hasn't yet had the data added - //this will cut down on trips to the database if multiple filters require frequency data. - if (variantEvaluation.getFrequencyData().getKnownFrequencies().isEmpty()) { - FrequencyData frequencyData = variantDataService.getVariantFrequencyData(variantEvaluation, frequencySources); - variantEvaluation.setFrequencyData(frequencyData); - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FrequencyFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FrequencyFilter.java deleted file mode 100644 index a6d161c34..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FrequencyFilter.java +++ /dev/null @@ -1,130 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import java.util.Objects; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * VariantFilter variants according to their frequency. - * - * @author Peter N Robinson - * @author Jules Jacobsen - * @version 0.09 (April 28, 2013) - */ -public class FrequencyFilter implements VariantFilter { - - /** - * Threshold for filtering. Retain only those variants whose frequency - * (expressed as a percentage) is below this threshold. The default value is - * 100%, i.e., no filtering out. - */ - private final float maxFreq; - - private static final Logger logger = LoggerFactory.getLogger(FrequencyFilter.class); - - private static final FilterType filterType = FilterType.FREQUENCY_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - /** - * Creates a runFilter with a maximum frequency threshold for variants. - * - * @param maxFreq sets the maximum frequency threshold (percent value) of - * the minor allele required to pass the filer. For example a value of 1 - * will set the threshold of the minor allele frequency to under 1%. - */ - public FrequencyFilter(float maxFreq) { - if (maxFreq < 0f || maxFreq > 100f) { - throw new IllegalArgumentException(String.format("Illegal value for maximum frequency threshold: %2f. Value should be between 0 and 100", maxFreq)); - } - this.maxFreq = maxFreq; - } - - public float getMaxFreq() { - return maxFreq; - } - - /** - * Flag to output results of filtering against frequency with Thousand - * Genomes and ESP data. - */ - @Override - public FilterType getFilterType() { - return filterType; - } - - /** - * Returns true if the {@code VariantEvaluation} passes the runFilter. - * Returns a PASS or FAIL on the basis of the estimated frequency of the - * variant in the population. If the variant in question has a higher - * frequency than the threshold in either the dbSNP data or the ESP data, - * then we flag it as failed. - * - * @param variantEvaluation - * @return - */ - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - FrequencyData frequencyData = variantEvaluation.getFrequencyData(); - //frequency data is derived from the database - consequently make sure the data has been fetched otherwise the - //score will be the same for all variants. - float variantFrequencyScore = frequencyData.getScore(); - - if (passesFilter(frequencyData)) { - return passesFilter; - } - return failsFilter; - } - - /** - * This method returns false if the variant is more common than the - * threshold in any one of the dbSNP data, or the ESP data for European - * Americans, African Americans, or All comers. - * - * @param frequencyData - * @return true if the variant being analyzed is rarer than the threshold - */ - protected boolean passesFilter(FrequencyData frequencyData) { - - for (Frequency frequency : frequencyData.getKnownFrequencies()) { - if (frequency.isOverThreshold(maxFreq)) { - return false; - } - } - return true; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 29 * hash + Float.floatToIntBits(this.maxFreq); - hash = 29 * hash + Objects.hashCode(FrequencyFilter.filterType); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final FrequencyFilter other = (FrequencyFilter) obj; - if (Float.floatToIntBits(this.maxFreq) != Float.floatToIntBits(other.maxFreq)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "FrequencyFilter{" + "maxFreq=" + maxFreq + '}'; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/GeneFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/GeneFilter.java deleted file mode 100644 index 17af803e4..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/GeneFilter.java +++ /dev/null @@ -1,26 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.Gene; - -/** - * - * @author Jules Jacobsen - */ -public interface GeneFilter extends Filter { - - /** - * True or false depending on whether the {@code Gene} passes the runFilter - * or not. - * - * @param gene to be filtered - * @return true if the {@code Gene} passes the runFilter. - */ - @Override - public FilterResult runFilter(Gene gene); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/GeneFilterRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/GeneFilterRunner.java deleted file mode 100644 index 84fe1a88c..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/GeneFilterRunner.java +++ /dev/null @@ -1,23 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.Gene; -import java.util.List; - -/** - * - * @author Jules Jacobsen - */ -public interface GeneFilterRunner extends FilterRunner{ - - @Override - public List run(GeneFilter geneFilter, List genes); - - @Override - public List run(List geneFilters, List genes); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/InheritanceFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/InheritanceFilter.java deleted file mode 100644 index f282ace33..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/InheritanceFilter.java +++ /dev/null @@ -1,87 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.Objects; - -/** - * A Gene runFilter for filtering against a particular inheritance mode. - * - * @author Jules Jacobsen - */ -public class InheritanceFilter implements GeneFilter { - - private static final FilterType filterType = FilterType.INHERITANCE_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - private final ModeOfInheritance modeOfInheritance; - - public InheritanceFilter(ModeOfInheritance modeOfInheritance) { - this.modeOfInheritance = modeOfInheritance; - } - - public ModeOfInheritance getModeOfInheritance() { - return modeOfInheritance; - } - - @Override - public FilterResult runFilter(Gene gene) { - if (modeOfInheritance == ModeOfInheritance.UNINITIALIZED) { - //if ModeOfInheritance.UNINITIALIZED pass the runFilter - ideally it shouldn't be applied in the first place. - return new NotRunFilterResult(filterType); - } - if (gene.isCompatibleWith(modeOfInheritance)) { - return addFilterResultToVariants(passesFilter, gene); - } - return addFilterResultToVariants(failsFilter, gene); - } - - private FilterResult addFilterResultToVariants(FilterResult filterResult, Gene gene) { - for (VariantEvaluation variant : gene.getVariantEvaluations()) { - if (variant.isCompatibleWith(modeOfInheritance)) { - variant.addFilterResult(passesFilter); - } else { - variant.addFilterResult(failsFilter); - } - } - return filterResult; - } - - @Override - public FilterType getFilterType() { - return filterType; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 71 * hash + Objects.hashCode(this.modeOfInheritance); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final InheritanceFilter other = (InheritanceFilter) obj; - return this.modeOfInheritance == other.modeOfInheritance; - } - - @Override - public String toString() { - return filterType + " filter: ModeOfInheritance=" + modeOfInheritance; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/IntervalFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/IntervalFilter.java deleted file mode 100644 index 856d17487..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/IntervalFilter.java +++ /dev/null @@ -1,106 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.Variant; -import java.util.Objects; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * VariantFilter variants according to a linkage interval. For instance, if the - * interval is chr2:12345-67890, then we would only keep variants located - * between positions 12345 and 67890 on chromosome 2. All other variants are - * discarded. - *

- * The interval must be given as chr2:12345-67890 (format), otherwise, an error - * message is given and no filtering is done. - * - * @author Peter N Robinson - * @version 0.08 (April 28, 2013) - */ -public class IntervalFilter implements VariantFilter { - - private static final Logger logger = LoggerFactory.getLogger(IntervalFilter.class); - - private static final FilterType filterType = FilterType.INTERVAL_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - private final GeneticInterval interval; - - /** - * Constructor defining the genetic interval. - * - * @param interval the interval based on a String such as chr2:12345-67890. - */ - public IntervalFilter(GeneticInterval interval) { - this.interval = interval; - - } - - public GeneticInterval getGeneticInterval() { - return interval; - } - - /** - * @return an integer constant (as defined in exomizer.common.Constants) - * that will act as a flag to generate the output HTML dynamically depending - * on the filters that the user has chosen. - */ - @Override - public FilterType getFilterType() { - return filterType; - } - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - if (variantIsNotWithinInterval(variantEvaluation)) { - return failsFilter; - } - return passesFilter; - } - - private boolean variantIsNotWithinInterval(Variant variant) { - if (variantNotOnSameChromosomeAsInterval(variant.getChromosome())) { - return true; - } else { - return variantPositionOutsideOfIntervalBounds(variant.getPosition()); - } - } - - private boolean variantNotOnSameChromosomeAsInterval(int variantChromosome) { - return variantChromosome != interval.getChromosome(); - } - - private boolean variantPositionOutsideOfIntervalBounds(int variantPosition) { - return variantPosition < interval.getStart() || variantPosition > interval.getEnd(); - } - - @Override - public int hashCode() { - int hash = 7; - hash = 97 * hash + Objects.hashCode(IntervalFilter.filterType); - hash = 97 * hash + Objects.hashCode(this.interval); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final IntervalFilter other = (IntervalFilter) obj; - return Objects.equals(this.interval, other.interval); - } - - @Override - public String toString() { - return filterType + " filter chromosome=" + interval.getChromosome() + ", from=" + interval.getStart() + ", to=" + interval.getEnd() + ", interval=" + interval; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/KnownVariantFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/KnownVariantFilter.java deleted file mode 100644 index 6d0032069..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/KnownVariantFilter.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.Objects; - -/** - * Filter for removing variants which have been characterised in a database. - * This includes having an RSID assigned or having any frequency data. - * - * @author Jules Jacobsen - */ -public class KnownVariantFilter implements VariantFilter { - - private static final FilterType KNOWN_VARIANT_FILTER_TYPE = FilterType.KNOWN_VARIANT_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(KNOWN_VARIANT_FILTER_TYPE); - private final FilterResult failsFilter = new FailFilterResult(KNOWN_VARIANT_FILTER_TYPE); - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - if (notRepresentedInDatabase(variantEvaluation)) { - return passesFilter; - } - return failsFilter; - } - - private boolean notRepresentedInDatabase(VariantEvaluation variantEvaluation) { - return !variantEvaluation.getFrequencyData().isRepresentedInDatabase(); - } - - @Override - public FilterType getFilterType() { - return KNOWN_VARIANT_FILTER_TYPE; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 29 * hash + Objects.hashCode(KNOWN_VARIANT_FILTER_TYPE); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final KnownVariantFilter other = (KnownVariantFilter) obj; - return this.KNOWN_VARIANT_FILTER_TYPE == other.KNOWN_VARIANT_FILTER_TYPE; - } - - @Override - public String toString() { - return "KnownVariantFilter{}"; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/NotRunFilterResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/NotRunFilterResult.java deleted file mode 100644 index d7a41bb79..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/NotRunFilterResult.java +++ /dev/null @@ -1,18 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -/** - * - * @author Jules Jacobsen - */ -public class NotRunFilterResult extends AbstractFilterResult { - - public NotRunFilterResult(FilterType filterType) { - super(filterType, FilterResultStatus.NOT_RUN); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PassFilterResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PassFilterResult.java deleted file mode 100644 index 03d0e690f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PassFilterResult.java +++ /dev/null @@ -1,18 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -/** - * - * @author Jules Jacobsen - */ -public class PassFilterResult extends AbstractFilterResult { - - public PassFilterResult(FilterType filterType) { - super(filterType, FilterResultStatus.PASS); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PathogenicityDataProvider.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PathogenicityDataProvider.java deleted file mode 100644 index 2b48edda2..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PathogenicityDataProvider.java +++ /dev/null @@ -1,41 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import java.util.EnumSet; -import java.util.Set; - -/** - * - * @author Jules Jacobsen - */ -public class PathogenicityDataProvider extends AbstractFilterDataProvider { - - private final Set pathogenicitySources; - - public PathogenicityDataProvider(VariantDataService variantDataService, Set pathogenicitySources, VariantFilter variantFilter) { - super(variantDataService, variantFilter); - - if (pathogenicitySources.isEmpty()) { - this.pathogenicitySources = EnumSet.noneOf(PathogenicitySource.class); - } else { - this.pathogenicitySources = EnumSet.copyOf(pathogenicitySources); - } - } - - @Override - public void provideVariantData(VariantEvaluation variantEvaluation) { - if (variantEvaluation.getPathogenicityData().getPredictedPathogenicityScores().isEmpty()) { - PathogenicityData pathData = variantDataService.getVariantPathogenicityData(variantEvaluation, pathogenicitySources); - variantEvaluation.setPathogenicityData(pathData); - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PathogenicityFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PathogenicityFilter.java deleted file mode 100644 index f4e7f09ba..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PathogenicityFilter.java +++ /dev/null @@ -1,94 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import java.util.Objects; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Filters variants according to their predicted pathogenicity. - * - * @author Peter N Robinson - * @author Jules Jacobsen - * @version 0.09 (29 December, 2012). - */ -public class PathogenicityFilter implements VariantFilter { - - private static final Logger logger = LoggerFactory.getLogger(PathogenicityFilter.class); - private static final FilterType filterType = FilterType.PATHOGENICITY_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - private final boolean keepNonPathogenic; - - /** - * Produces a Pathogenicity filter using a user-defined pathogenicity - * threshold. The keepNonPathogenic parameter will apply the pathogenicity - * scoring, but no further filtering will be applied so all variants will - * pass irrespective of their score. - * - * @param keepNonPathogenic - */ - public PathogenicityFilter(boolean keepNonPathogenic) { - this.keepNonPathogenic = keepNonPathogenic; - } - - public boolean keepNonPathogenic() { - return keepNonPathogenic; - } - - /** - * Flag to output results of filtering against polyphen, SIFT, and mutation - * taster. - */ - @Override - public FilterType getFilterType() { - return filterType; - } - - /** - * VariantFilter variants based on their calculated pathogenicity. Those - * that pass have a pathogenicity score assigned to them. The failed ones - * are deemed to be non-pathogenic and marked as such. - * -*/ - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - - if (keepNonPathogenic) { - return passesFilter; - } - if (variantEvaluation.isPredictedPathogenic()) { - return passesFilter; - } - return failsFilter; - } - - @Override - public int hashCode() { - int hash = 5; - hash = 97 * hash + Objects.hashCode(PathogenicityFilter.filterType); - hash = 97 * hash + (this.keepNonPathogenic ? 1 : 0); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PathogenicityFilter other = (PathogenicityFilter) obj; - return this.keepNonPathogenic == other.keepNonPathogenic; - } - - @Override - public String toString() { - return "PathogenicityFilter{" + "keepNonPathogenic=" + keepNonPathogenic + '}'; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PriorityScoreFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PriorityScoreFilter.java deleted file mode 100644 index a372f34ea..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/PriorityScoreFilter.java +++ /dev/null @@ -1,103 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.PriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import java.util.List; -import java.util.Objects; - -/** - * - * @author Jules Jacobsen - */ -public class PriorityScoreFilter implements GeneFilter { - - private static final FilterType filterType = FilterType.PRIORITY_SCORE_FILTER; - - private final float minPriorityScore; - - private final PriorityType priorityType; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - public PriorityScoreFilter(PriorityType priorityType, float minPriorityScore) { - this.minPriorityScore = minPriorityScore; - this.priorityType = priorityType; - } - - public PriorityType getPriorityType() { - return priorityType; - } - - public float getMinPriorityScore() { - return minPriorityScore; - } - - @Override - public FilterType getFilterType() { - return filterType; - } - - /** - * Fails all Genes with a priority score below the set threshold. Note that - * un-prioritised genes will have a score of 0 and will therefore fail this - * filter by default. - * - * @param gene - * @return - */ - @Override - public FilterResult runFilter(Gene gene) { - PriorityResult priorityResult = gene.getPriorityResult(priorityType); - if (priorityResult == null) { - return failsFilter; - } - if (priorityResult.getScore() >= minPriorityScore) { - return addFilterResultToVariants(passesFilter, gene); - } - return addFilterResultToVariants(failsFilter, gene); - } - - private FilterResult addFilterResultToVariants(FilterResult filterResult, Gene gene) { - for (VariantEvaluation variant : gene.getVariantEvaluations()) { - variant.addFilterResult(filterResult); - } - return filterResult; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 17 * hash + Float.floatToIntBits(this.minPriorityScore); - hash = 17 * hash + Objects.hashCode(this.priorityType); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PriorityScoreFilter other = (PriorityScoreFilter) obj; - if (Float.floatToIntBits(this.minPriorityScore) != Float.floatToIntBits(other.minPriorityScore)) { - return false; - } - return this.priorityType == other.priorityType; - } - - @Override - public String toString() { - return "PriorityScoreFilter{" + "priorityType=" + priorityType + ", minPriorityScore=" + minPriorityScore + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/QualityFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/QualityFilter.java deleted file mode 100644 index 9f97d5e02..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/QualityFilter.java +++ /dev/null @@ -1,102 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * VariantFilter Variants on the basis of the PHRED quality score for the - * variant that was derived from the VCF file (QUAL field). - * - * @author Peter N Robinson - * @author Jules Jacobsen - * @version 0.09 (18 December, 2013). - */ -public class QualityFilter implements VariantFilter { - - private static final Logger logger = LoggerFactory.getLogger(QualityFilter.class); - - private static final FilterType filterType = FilterType.QUALITY_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - /** - * Threshold for filtering. Retain only those variants whose PHRED variant - * call quality is at least as good. The default is 1. - */ - private final double mimimumQualityThreshold; - - /** - * Constructs a VariantFilter for removing variants which do not pass the - * defined PHRED score. - * - * n.b. We are no longer filtering by requiring a minimum number of reads - * for each DP4 field (alt/ref in both directions). Instead, we are just - * filtering on the overall PHRED variant call quality. - * - * @param mimimumQualityThreshold The minimum PHRED quality threshold (e.g. - * 30) under which a variant will be filtered out. - */ - public QualityFilter(double mimimumQualityThreshold) { - if (mimimumQualityThreshold <= 0f) { - throw new IllegalArgumentException(String.format("Illegal value for minimum quality threshold: %2f. Minimum quality threshold must be greater than 0.0", mimimumQualityThreshold)); - } - this.mimimumQualityThreshold = mimimumQualityThreshold; - } - - public double getMimimumQualityThreshold() { - return mimimumQualityThreshold; - } - - /** - * Flag for output field representing the QUAL column of the VCF file. - */ - @Override - public FilterType getFilterType() { - return filterType; - } - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - double phredScore = variantEvaluation.getPhredScore(); - if (overQualityThreshold(phredScore)) { - return passesFilter; - } - // Variant is not of good quality - return failsFilter; - } - - protected boolean overQualityThreshold(double qualityScore) { - return qualityScore >= mimimumQualityThreshold; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 59 * hash + (int) (Double.doubleToLongBits(this.mimimumQualityThreshold) ^ (Double.doubleToLongBits(this.mimimumQualityThreshold) >>> 32)); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final QualityFilter other = (QualityFilter) obj; - if (Double.doubleToLongBits(this.mimimumQualityThreshold) != Double.doubleToLongBits(other.mimimumQualityThreshold)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "QualityFilter{" + "mimimumQualityThreshold=" + mimimumQualityThreshold + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/RegulatoryFeatureFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/RegulatoryFeatureFilter.java deleted file mode 100644 index f798424c0..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/RegulatoryFeatureFilter.java +++ /dev/null @@ -1,97 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.annotation.Annotation; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import java.util.List; -import java.util.Objects; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * @author Jules Jacobsen - */ -public class RegulatoryFeatureFilter implements VariantFilter { - - private static final Logger logger = LoggerFactory.getLogger(RegulatoryFeatureFilter.class); - - private static final FilterType filterType = FilterType.REGULATORY_FEATURE_FILTER; - - //add a token pass/failed score - this is essentially a boolean pass/fail, where 1 = pass and 0 = fail - private final FilterResult passedFilterResult = new PassFilterResult(filterType); - private final FilterResult failedFilterResult = new FailFilterResult(filterType); - - @Override - public FilterType getFilterType() { - return filterType; - } - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - VariantEffect effect = variantEvaluation.getVariantEffect(); - // Note the INTERGENIC/UPSTREAM variants have already been assessed by the RegFeatureDAO and VariantEffect set to REGULATORY_REGION_VARIANT if in a known region - // TODO make below nicer using a Jannovar method hopefully - if (effect.equals(VariantEffect.INTERGENIC_VARIANT) || effect.equals(VariantEffect.UPSTREAM_GENE_VARIANT)){ - // GeneReassigner can assign a new empty list - if (variantEvaluation.getAnnotations().isEmpty()){ - return failedFilterResult; - } - int dist = getDistFromNearestGene(variantEvaluation); - if (dist >= 0 && dist < 20000){ - return passedFilterResult; - } - return failedFilterResult; - } - return passedFilterResult; - } - - private int getDistFromNearestGene(VariantEvaluation variantEvaluation) { - Annotation annotation = variantEvaluation.getAnnotations().get(0);//.getHighestImpactAnnotation(); - String intergenicAnnotation = annotation.toVCFAnnoString(variantEvaluation.getAlt()); - return Math.abs(Integer.parseInt(intergenicAnnotation.split("\\|")[14])); - } - - @Override - public int hashCode() { - int hash = 7; - hash = 37 * hash + Objects.hashCode(RegulatoryFeatureFilter.filterType); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final RegulatoryFeatureFilter other = (RegulatoryFeatureFilter) obj; - return Objects.equals(this.getFilterType(), other.getFilterType()); - } - - @Override - public String toString() { - return "RegulatoryFeatureFilter{" + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SimpleGeneFilterRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SimpleGeneFilterRunner.java deleted file mode 100644 index 8896800f9..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SimpleGeneFilterRunner.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class SimpleGeneFilterRunner implements GeneFilterRunner { - - private static final Logger logger = LoggerFactory.getLogger(SimpleGeneFilterRunner.class); - - @Override - public List run(List filters, List genes) { - logger.info("Filtering {} genes using non-destructive simple filtering", genes.size()); - for (Gene gene : genes) { - if (gene.passedFilters()) { - runAllFiltersOverGene(filters, gene); - } - } - logger.info("Ran {} filters over {} genes using non-destructive simple filtering.", getFilterTypes(filters), genes.size()); - return genes; - } - - @Override - public List run(GeneFilter filter, List genes) { - for (Gene gene : genes) { - if (gene.passedFilters()) { - runFilterAndAddResult(filter, gene); - } - } - return genes; - } - - private void runAllFiltersOverGene(List filters, Gene gene) { - for (Filter filter : filters) { - runFilterAndAddResult(filter, gene); - } - } - - private FilterResult runFilterAndAddResult(Filter filter, Gene gene) { - FilterResult filterResult = filter.runFilter(gene); - if (filterResult.getResultStatus() != FilterResultStatus.NOT_RUN) { - gene.addFilterResult(filterResult); - } - return filterResult; - } - - private Set getFilterTypes(List filters) { - Set filtersRun = new LinkedHashSet<>(); - for (Filter filter : filters) { - filtersRun.add(filter.getFilterType()); - } - return filtersRun; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SimpleVariantFilterRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SimpleVariantFilterRunner.java deleted file mode 100644 index 5b4db2e2a..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SimpleVariantFilterRunner.java +++ /dev/null @@ -1,95 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.Filterable; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Applies the given {@code VariantFilter} to the {@code VariantEvaluation}. - * This can be done in a 'non-destructive' manner such that every - * {@code VariantEvaluation} is passed through each and every run, or in a - * 'destructive' manner where only {@code VariantEvaluation} which pass through - * all the desired filters are returned at the end. - * - * This simple implementation of the {@code VariantFilter} assumes that all the - * necessary data has been applied to the {@code VariantEvaluation} being - * filtered beforehand. If it hasn't then the results will be wrong - * - * @author Jules Jacobsen - */ -public class SimpleVariantFilterRunner implements VariantFilterRunner { - - private static final Logger logger = LoggerFactory.getLogger(SimpleVariantFilterRunner.class); - - @Override - public List run(List variantFilters, List variantEvaluations) { - logger.info("Filtering {} variants using simple filtering...", variantEvaluations.size()); - for (VariantEvaluation variantEvaluation : variantEvaluations) { - run(variantFilters, variantEvaluation); - } - logger.info("Ran {} filters over {} variants using simple filtering.", getFilterTypes(variantFilters), variantEvaluations.size()); - return variantEvaluations; - } - - @Override - public List run(VariantFilter filter, List filterables) { - for (VariantEvaluation variantEvaluation : filterables) { - run(filter, variantEvaluation); - } - return filterables; - } - - private void run(List variantFilters, VariantEvaluation variantEvaluation) { - for (VariantFilter filter : variantFilters) { - run(filter, variantEvaluation); - } - } - - @Override - public FilterResult run(Filter filter, VariantEvaluation variantEvaluation) { - return runFilterAndAddResult(filter, variantEvaluation); - } - - protected FilterResult runFilterAndAddResult(Filter filter, Filterable filterable) { - FilterResult filterResult = filter.runFilter(filterable); - filterable.addFilterResult(filterResult); - return filterResult; - } - - protected Set getFilterTypes(List filters) { - Set filtersRun = new LinkedHashSet<>(); - for (Filter filter : filters) { - filtersRun.add(filter.getFilterType()); - } - return filtersRun; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SparseVariantFilterRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SparseVariantFilterRunner.java deleted file mode 100644 index cca4989db..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/SparseVariantFilterRunner.java +++ /dev/null @@ -1,85 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import java.util.ArrayList; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * @author Jules Jacobsen - */ -public class SparseVariantFilterRunner extends SimpleVariantFilterRunner { - - private static final Logger logger = LoggerFactory.getLogger(SparseVariantFilterRunner.class); - - /** - * @param filters - * @param variantEvaluations - * @return - */ - @Override - public List run(List filters, List variantEvaluations) { - logger.info("Filtering {} variants using sparse filtering...", variantEvaluations.size()); - - if (ifThereAreNoFiltersToRun(filters)) { - return variantEvaluations; - } - - List filteredVariantEvaluations = runFilters(filters, variantEvaluations); - - int numRemoved = variantEvaluations.size() - filteredVariantEvaluations.size(); - logger.info("Filtering for {} removed {} of {} variants - returning {} filtered variants.", getFilterTypes(filters), numRemoved, variantEvaluations.size(), filteredVariantEvaluations.size()); - return filteredVariantEvaluations; - } - - @Override - public List run(VariantFilter filter, List variantEvaluations) { - for (VariantEvaluation variantEvaluation : variantEvaluations) { - if (variantEvaluation.passedFilters()) { - run(filter, variantEvaluation); - } - } - return makeListofFilteredVariants(variantEvaluations); - } - - private boolean ifThereAreNoFiltersToRun(List filters) { - if (filters.isEmpty()) { - logger.info("Unable to filter variants against empty Filter list - returning all variants"); - return true; - } - return false; - } - - private List runFilters(List filters, List variantEvaluations) { - - for (Filter filter : filters) { - for (VariantEvaluation variantEvaluation : variantEvaluations) { - //the only difference between sparse and full filtering is this if clause here... - if (variantEvaluation.passedFilters()) { - run(filter, variantEvaluation); - } - } - } - return makeListofFilteredVariants(variantEvaluations); - } - - private List makeListofFilteredVariants(List variantEvaluations) { - List filteredVariantEvaluations = new ArrayList<>(); - for (VariantEvaluation variant : variantEvaluations) { - if (variant.passedFilters()) { - filteredVariantEvaluations.add(variant); - } - } - return filteredVariantEvaluations; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantEffectFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantEffectFilter.java deleted file mode 100644 index e78628855..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantEffectFilter.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.filters; - -import java.lang.*; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.annotation.Annotation; - - -import java.util.EnumSet; -import java.util.Objects; -import java.util.Set; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Filters variants according to their {@link VariantEffect}. The filter will mark variants as failed if they are contained - * in the set of specified {@link VariantEffect}. - * - * @author Peter N Robinson - * @author Jules Jacobsen - */ -public class VariantEffectFilter implements VariantFilter { - - private static final Logger logger = LoggerFactory.getLogger(VariantEffectFilter.class); - - private static final FilterType filterType = FilterType.VARIANT_EFFECT_FILTER; - - private final FilterResult passesFilter = new PassFilterResult(filterType); - private final FilterResult failsFilter = new FailFilterResult(filterType); - - private final Set offTargetVariantTypes; - - public VariantEffectFilter(Set notWanted) { - offTargetVariantTypes = notWanted; - } - - public Set getOffTargetVariantTypes() { - return offTargetVariantTypes; - } - - @Override - public FilterType getFilterType() { - return filterType; - } - - @Override - public FilterResult runFilter(VariantEvaluation filterable) { - VariantEffect effect = filterable.getVariantEffect(); - if (offTargetVariantTypes.contains(effect)) { - return failsFilter; - } - return passesFilter; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 37 * hash + Objects.hashCode(VariantEffectFilter.filterType); - hash = 37 * hash + Objects.hashCode(this.offTargetVariantTypes); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final VariantEffectFilter other = (VariantEffectFilter) obj; - return Objects.equals(this.offTargetVariantTypes, other.offTargetVariantTypes); - } - - @Override - public String toString() { - return "VariantEffectFilter{" + "offTargetVariantTypes=" + offTargetVariantTypes + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilter.java deleted file mode 100644 index 242cad314..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilter.java +++ /dev/null @@ -1,25 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -/** - * This interface is implemented by classes that perform filtering of the - * variants in the VCF file according to various criteria. A - * {@code FilterResult} gets returned for each {@code VariantEvaluation}. - * - * @author Jules Jacobsen - * @author Peter N Robinson - * @version 0.07 (April 28, 2013). - */ -public interface VariantFilter extends Filter { - - /** - * Returns a {@code FilterResult} indicating whether the - * {@code VariantEvaluation} passed or failed the {@code Filter}. - * - * @param variantEvaluation to be filtered - */ - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilterDataProvider.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilterDataProvider.java deleted file mode 100644 index 31bf1b956..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilterDataProvider.java +++ /dev/null @@ -1,23 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -/** - * Decorator interface to provide data for variants just in time for the filter - * which requires it. - * - * @author Jules Jacobsen - */ -public interface VariantFilterDataProvider extends VariantFilter { - - /** - * Provides the variantEvaluation with the implementation-specific data. - * @param variantEvaluation - */ - public void provideVariantData(VariantEvaluation variantEvaluation); - - /** - * @return the decorated filter which the DataProvider is providing data for. - */ - public VariantFilter getDecoratedFilter(); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilterRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilterRunner.java deleted file mode 100644 index 56b20579d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/VariantFilterRunner.java +++ /dev/null @@ -1,25 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.List; - -/** - * - * @author Jules Jacobsen - */ -public interface VariantFilterRunner extends FilterRunner{ - - @Override - public List run(VariantFilter variantFilter, List variantEvaluations); - - @Override - public List run(List variantFilters, List variantEvaluations); - - public FilterResult run(Filter filter, VariantEvaluation variantEvaluation); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/ChromosomalRegion.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/ChromosomalRegion.java deleted file mode 100644 index 4159e1feb..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/ChromosomalRegion.java +++ /dev/null @@ -1,32 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model; - -/** - * @author Jules Jacobsen - */ -public interface ChromosomalRegion { - - public int getChromosome(); - - public int getStart(); - - public int getEnd(); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Disease.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Disease.java deleted file mode 100644 index 8e3f72835..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Disease.java +++ /dev/null @@ -1,103 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.List; - -/** - * Disease bean representing a genetic disease. - * - * @author Jules Jacobsen - */ -public class Disease implements Comparable{ - - private DiseaseIdentifier diseaseIdentifier; - private String term; - private List phenotypeTerms; - - public Disease() { - } - - /** - * Convenience constructor - will create a new Disease with a new DiseaseIdentifier - * being made from the provided diseaseId. - * - * @param diseaseId - */ - public Disease(String diseaseId) { - this.diseaseIdentifier = new DiseaseIdentifier(diseaseId); - } - - public Disease(DiseaseIdentifier diseaseIdentifier) { - this.diseaseIdentifier = diseaseIdentifier; - } - - public String getDiseaseId() { - return diseaseIdentifier.getCompoundIdentifier(); - } - - public DiseaseIdentifier getDiseaseIdentifier() { - return diseaseIdentifier; - } - - public void setDiseaseIdentifier(DiseaseIdentifier diseaseIdentifier) { - this.diseaseIdentifier = diseaseIdentifier; - } - - public String getTerm() { - return term; - } - - public void setTerm(String term) { - this.term = term; - } - - public List getPhenotypeTerms() { - return phenotypeTerms; - } - - public void setPhenotypeTerms(List phenotypeTerms) { - this.phenotypeTerms = phenotypeTerms; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 53 * hash + (this.diseaseIdentifier != null ? this.diseaseIdentifier.hashCode() : 0); - hash = 53 * hash + (this.term != null ? this.term.hashCode() : 0); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final Disease other = (Disease) obj; - if (this.diseaseIdentifier != other.diseaseIdentifier && (this.diseaseIdentifier == null || !this.diseaseIdentifier.equals(other.diseaseIdentifier))) { - return false; - } - if ((this.term == null) ? (other.term != null) : !this.term.equals(other.term)) { - return false; - } - return true; - } - - - @Override - public int compareTo(Disease t) { - return this.diseaseIdentifier.compareTo(t.diseaseIdentifier); - } - - @Override - public String toString() { - return "Disease{" + diseaseIdentifier + " - " + term + "}"; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/DiseaseIdentifier.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/DiseaseIdentifier.java deleted file mode 100644 index 30ee708a9..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/DiseaseIdentifier.java +++ /dev/null @@ -1,44 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -/** - * - * @author Jules Jacobsen - */ -public class DiseaseIdentifier extends ExternalIdentifier implements Comparable { - - public DiseaseIdentifier(String compoundIdentifier) { - super(compoundIdentifier); - } - - public DiseaseIdentifier(String databaseCode, String databaseAcc) { - super(databaseCode, databaseAcc); - } - - /** - * Sorts the ExternalIdentifier by databaseCode and then by databaseIdentifier - * @param other - * @return - */ - @Override - public int compareTo(DiseaseIdentifier other) { - final int BEFORE = -1; - final int EQUAL = 0; - final int AFTER = 1; - - if (this == other) { - return EQUAL; - } - - if (this.getDatabaseCode().equals(other.getDatabaseCode())) { - return (this.getDatabaseAcc().compareTo(other.getDatabaseAcc())); - } - - return this.getDatabaseCode().compareTo(other.getDatabaseCode()); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/DiseaseModel.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/DiseaseModel.java deleted file mode 100644 index 0f0d80366..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/DiseaseModel.java +++ /dev/null @@ -1,104 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.LinkedHashMap; -import java.util.List; -import java.util.Map; - -/** - * - * @author Jules Jacobsen - */ -public class DiseaseModel implements Model { - - private final String modelId; - private final Organism organism; - - private final int entrezGeneId; - private final String humanGeneSymbol; - - private final String diseaseId; - private final String diseaseTerm; - - private final List phenotypeIds; - - private double score = 0d; - private final Map bestPhenotypeMatchForTerms; - - public DiseaseModel(String modelId, Organism organism, int entrezGeneId, String humanGeneSymbol, String diseaseId, String diseaseTerm, List phenotypeIds) { - this.modelId = modelId; - this.organism = organism; - - this.entrezGeneId = entrezGeneId; - this.humanGeneSymbol = humanGeneSymbol; - - this.diseaseId = diseaseId; - this.diseaseTerm = diseaseTerm; - - this.phenotypeIds = phenotypeIds; - this.bestPhenotypeMatchForTerms = new LinkedHashMap<>(); - } - - public String getDiseaseId() { - return diseaseId; - } - - public String getDiseaseTerm() { - return diseaseTerm; - } - - @Override - public Organism getOrganism() { - return organism; - } - - @Override - public int getEntrezGeneId() { - return entrezGeneId; - } - - @Override - public String getHumanGeneSymbol() { - return humanGeneSymbol; - } - - @Override - public String getModelId() { - return modelId; - } - - @Override - public List getPhenotypeIds() { - return phenotypeIds; - } - - @Override - public double getScore() { - return score; - } - - @Override - public void setScore(double score) { - this.score = score; - } - - @Override - public Map getBestPhenotypeMatchForTerms() { - return bestPhenotypeMatchForTerms; - } - - @Override - public void addMatchIfAbsentOrBetterThanCurrent(PhenotypeMatch match) { - PhenotypeTerm matchQueryTerm = match.getQueryPhenotype(); - if (!bestPhenotypeMatchForTerms.containsKey(matchQueryTerm)) { - bestPhenotypeMatchForTerms.put(matchQueryTerm, match); - } else if (bestPhenotypeMatchForTerms.get(matchQueryTerm).getScore() < match.getScore()) { - bestPhenotypeMatchForTerms.put(matchQueryTerm, match); - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/ExternalIdentifier.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/ExternalIdentifier.java deleted file mode 100644 index f8b6058ed..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/ExternalIdentifier.java +++ /dev/null @@ -1,168 +0,0 @@ -/* - * Copyright © 2011-2013 EMBL - European Bioinformatics Institute - * and Genome Research Limited - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -package de.charite.compbio.exomiser.core.model; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - - -/** - * Class describing the attributes of an external reference. In PhenoDigm - * this is anouther resource, e.g. MGI, HGNC, OMIM, ORPHANET, DECIPHER. - * - * @author Jules Jacobsen - */ -public class ExternalIdentifier { - - private static final Logger logger = LoggerFactory.getLogger(ExternalIdentifier.class); - - private final String databaseCode; - private final String databaseAcc; - - private static enum ExternalLink { - //genes - MGI("MGI", "http://www.informatics.jax.org/accession/MGI:"), - HGNC("HGNC", "http://www.genenames.org/data/hgnc_data.php?hgnc_id="), - ZFIN("ZFIN","http://zfin.org/"), - //diseases - OMIM("OMIM", "http://omim.org/entry/"), - ORPHANET("ORPHANET", "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert="), - DECIPHER("DECIPHER", "https://decipher.sanger.ac.uk/syndrome/"), - - UNKNOWN("UNKNOWN", ""); - - private final String identifier; - private final String link; - - - private ExternalLink(String identifier, String link){ - this.identifier = identifier; - this.link = link; - } - - public String getLink() { - return link; - } - - public static ExternalLink getExternalLink(String identifier) { - - if (identifier != null) { - for (ExternalLink externalLink : ExternalLink.values()) { - if (externalLink.identifier.equals(identifier)) { - return externalLink; - } - } - } - return UNKNOWN; - } - } - /** - * Creates a new ExternalIdentifier from a compound identifier. - * Compound identifiers must follow the format: - * databaseCode:databaseAcc - * - * Examples: OMIM:101600, ORPHANET:1040, MGI:88452 - * @param compoundIdentifier - */ - protected ExternalIdentifier(String compoundIdentifier) { - - if (compoundIdentifier == null || !compoundIdentifier.contains(":")) { - //there are quite a lot of null or empty compound identifiers so let's just handle them and not talk about it... -// logger.debug("'{}' is not of the format DBCODE:ACCESSION - creating an empty external identifier", compoundIdentifier); - this.databaseAcc = "-"; - this.databaseCode = "-"; - } else { - String[] database = compoundIdentifier.split(":"); - String dbCode = database[0]; - String dbAc = database[1]; - this.databaseCode = dbCode; - this.databaseAcc = dbAc; - } - } - - /** - * Creates a new ExternalIdentifier from a databaseCode and a databaseAcc. - * - * Examples: OMIM:101600, ORPHANET:1040, MGI:88452 - * @param databaseCode OMIM: - * @param databaseAcc 101600 - */ - protected ExternalIdentifier(String databaseCode, String databaseAcc) { - this.databaseCode = databaseCode; - this.databaseAcc = databaseAcc; - } - - public String getDatabaseCode() { - return databaseCode; - } - - public String getDatabaseAcc() { - return databaseAcc; - } - - public String getExternalUri() { - ExternalLink externalLink = ExternalLink.getExternalLink(this.databaseCode); - if (externalLink == ExternalLink.UNKNOWN) { - logger.info("{} is of resource type {} - Returning empty external URI.", this.databaseCode, ExternalLink.UNKNOWN); - return ""; - } - return String.format("%s%s", externalLink.getLink(), this.databaseAcc); - } - - /** - * Returns the 'full' identifier of a gene Id. In the case of an MGI gene Id - * this will be 'MGI:95522'. - * OMIM ids will be in the same format, for example 'OMIM:101600' - * @return String of the database identifier - */ - public String getCompoundIdentifier() { - return databaseCode + ":" + databaseAcc; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 79 * hash + (this.databaseCode != null ? this.databaseCode.hashCode() : 0); - hash = 79 * hash + (this.databaseAcc != null ? this.databaseAcc.hashCode() : 0); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final ExternalIdentifier other = (ExternalIdentifier) obj; - if ((this.databaseCode == null) ? (other.databaseCode != null) : !this.databaseCode.equals(other.databaseCode)) { - return false; - } - if ((this.databaseAcc == null) ? (other.databaseAcc != null) : !this.databaseAcc.equals(other.databaseAcc)) { - return false; - } - return true; - } - - - @Override - public String toString() { - return getCompoundIdentifier(); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/FilterStatus.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/FilterStatus.java deleted file mode 100644 index 860818324..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/FilterStatus.java +++ /dev/null @@ -1,16 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -/** - * Status of a Filterable - has it been filtered? Did it pass or fail? - * - * @author Jules Jacobsen - */ -public enum FilterStatus { - - UNFILTERED, FAILED, PASSED; -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Filterable.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Filterable.java deleted file mode 100644 index 386ed1370..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Filterable.java +++ /dev/null @@ -1,24 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.exomiser.core.filters.FilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; - -/** - * - * @author Jules Jacobsen - */ -public interface Filterable { - - public boolean passedFilters(); - - public boolean passedFilter(FilterType filterType); - - public boolean addFilterResult(FilterResult filterResult); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Gene.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Gene.java deleted file mode 100644 index c79265dd8..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Gene.java +++ /dev/null @@ -1,477 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.exomiser.core.filters.FilterResult; -import de.charite.compbio.exomiser.core.filters.FilterResultStatus; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.prioritisers.PriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; - -import java.util.ArrayList; -import java.util.EnumSet; -import java.util.LinkedHashMap; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Map; -import java.util.Objects; -import java.util.Set; -import java.util.function.Predicate; -import static java.util.stream.Collectors.toList; - -/** - * This class represents a Gene in which {@link Variant} - * objects have been identified by exome sequencing. Note that this class stores - * information about observed variants and quality scores etc. In contrast, the - * class {@link de.charite.compbio.jannovar.reference.TranscriptModel} stores - * information from UCSC about all genes, irrespective of whether we see a - * variant in the gene by exome sequencing. Therefore, the program uses - * information from {@link de.charite.compbio.jannovar.reference.TranscriptModel TranscriptModel} - * object to annotate variants found by exome sequencing, and stores the results - * of that annotation in {@link Variant Variant} objects. Objects - * of this class have a list of Variant objects, one for each variant observed - * in the exome. Additionally, the Gene objects get prioritized for their - * biomedical relevance to the disease in question, and each such prioritization - * results in an - * {@link de.charite.compbio.exomiser.core.prioritisers.PriorityResult PriorityResult} - * object. - *

- * There are additionally some prioritization procedures that only can be - * performed on genes (and not on the individual variants). For instance, there - * are certain genes such as the Mucins or the Olfactory receptor genes that are - * often found to have variants in WES data but are known not to be the relevant - * disease genes. Additionally, filtering for autosomal recessive or dominant - * patterns in the data is done with this class. This kind of prioritization is - * done by classes that implement - * {@link de.charite.compbio.exomiser.core.prioritisers.Prioritiser Prioritiser}. - * Recently, the ability to downweight genes with too many variants (now - * hardcoded to 5) was added). - * - * @author Peter Robinson - * @author Jules Jacobsen - * @version 0.21 (16 January, 2013) - */ -public class Gene implements Comparable, Filterable, Inheritable { - - /** - * A list of all of the variants that affect this gene. - */ - private final List variantEvaluations; - - private final Set failedFilterTypes; - private final Set passedFilterTypes; - private final Map filterResults; - - /** - * A priority score between 0 (irrelevant) and an arbitrary number (highest - * prediction for a disease gene) reflecting the predicted relevance of this - * gene for the disease under study by exome sequencing. - */ - private float priorityScore = 0f; - - /** - * A score representing the combined pathogenicity predictions for the - * {@link Variant} objects associated with this gene. - */ - private float filterScore = 0f; - /** - * A score representing the combined filter and priority scores. - */ - private float combinedScore = 0f; - - private final Map priorityResultsMap; - private Set inheritanceModes; - private final String geneSymbol; - private final int entrezGeneId; - - /** - * Construct the gene by providing a gene symbol and Entrez id. - * - * @param geneSymbol - * @param geneId - */ - public Gene(String geneSymbol, int geneId) { - this.geneSymbol = geneSymbol; - this.entrezGeneId = geneId; - variantEvaluations = new ArrayList(); - inheritanceModes = EnumSet.noneOf(ModeOfInheritance.class); - failedFilterTypes = new LinkedHashSet<>(); - passedFilterTypes = new LinkedHashSet<>(); - filterResults = new LinkedHashMap<>(); - priorityResultsMap = new LinkedHashMap(); - } - - /** - * @return the number of {@link Variant} associated with this gene. - */ - public int getNumberOfVariants() { - return variantEvaluations.size(); - } - - /** - * Downrank gene because it has a large numbers of variants (under the - * assumption that such genes are unlikely to be be true disease genes, - * rather, by chance say 2 of 20 variants are score as highly pathogenic by - * polyphen, leading to a false positive call. This method downweights the - * {@link #filterScore} of this gene, which is the aggregate score for the - * variants. - * - * @param threshold Downweighting occurs for variants that have this number - * or more variants. - */ -//commented out as this was unused - use the GeneScorer for this sort of function. -// public void downWeightGeneWithManyVariants(int threshold) { -// if (this.variantList.size() < threshold) { -// return; -// } -// // Start with downweighting factor of 5% -// // For every additional variant, add half again to the factor -// int s = this.variantList.size(); -// float factor = 0.05f; -// float downweight = 0f; -// while (s > threshold) { -// downweight += factor; -// factor *= 1.5; -// s--; -// } -// if (downweight > 1f) { -// downweight = 1f; -// } -// this.filterScore = this.filterScore * (1f - downweight); -// /* -// * filterscore is now at least zero -// */ -// -// } - - /** - * This function adds additional variants to the current gene. The variants - * have been identified by parsing the VCF file. - * - * @param var A Variant affecting the current gene. - */ - public final void addVariant(VariantEvaluation var) { - addGeneFilterResultsToVariant(var); - variantEvaluations.add(var); - } - - private void addGeneFilterResultsToVariant(VariantEvaluation var) { - filterResults.values().stream() - .filter(isNotInheritanceFilterResult()) - .forEach(result -> var.addFilterResult(result)); - } - - private Predicate isNotInheritanceFilterResult() { - return filterResult -> filterResult.getFilterType() != FilterType.INHERITANCE_FILTER; - } - - /** - * @return A list of all variants in the VCF file that affect this gene. - */ - public List getVariantEvaluations() { - return variantEvaluations; - } - - public List getPassedVariantEvaluations() { - return variantEvaluations.stream().filter(VariantEvaluation::passedFilters).collect(toList()); - } - - /** - * @return the NCBI Entrez Gene ID associated with this gene (extracted from - * one of the Variant objects) - */ - public int getEntrezGeneID() { - return entrezGeneId; - } - - /** - * Note that currently, the gene symbols are associated with the Variants. - * Probably it would be more natural to associate that with a field of this - * Gene object. For now, leave it as be, and return "-" if this gene has no - * {@link Variant} objects. - * - * @return the symbol associated with this gene (extracted from one of the - * Variant objects) - */ - public String getGeneSymbol() { - return geneSymbol; - } - - @Override - public Set getInheritanceModes() { - return inheritanceModes; - } - - @Override - public void setInheritanceModes(Set inheritanceModes) { - this.inheritanceModes = inheritanceModes; - } - - /** - * @param modeOfInheritance - * @return true if the variants for this gene are compatible with the given - * {@code ModeOfInheritance} otherwise false. - */ - @Override - public boolean isCompatibleWith(ModeOfInheritance modeOfInheritance) { - return inheritanceModes.contains(modeOfInheritance); - } - - /** - * @return true if the variants for this gene are compatible with autosomal - * recessive inheritance, otherwise false. - */ - public boolean isCompatibleWithRecessive() { - return inheritanceModes.contains(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - } - - /** - * @return true if the variants for this gene are compatible with autosomal - * dominant inheritance, otherwise false. - */ - public boolean isCompatibleWithDominant() { - return inheritanceModes.contains(ModeOfInheritance.AUTOSOMAL_DOMINANT); - } - - /** - * @return true if the variants for this gene are consistent with X - * chromosomal inheritance, otherwise false. - */ - public boolean isConsistentWithX() { - return inheritanceModes.contains(ModeOfInheritance.X_RECESSIVE); - } - - /** - * @return true if the gene is X chromosomal, otherwise false. - */ - public boolean isXChromosomal() { - if (variantEvaluations.isEmpty()) { - return false; - } - Variant ve = variantEvaluations.get(0); - return ve.isXChromosomal(); - } - - public boolean isYChromosomal() { - if (variantEvaluations.isEmpty()) { - return false; - } - Variant ve = variantEvaluations.get(0); - return ve.isYChromosomal(); - } - - /** - * @param priorityResult Result of a prioritization algorithm - */ - public void addPriorityResult(PriorityResult priorityResult) { - priorityResultsMap.put(priorityResult.getPriorityType(), priorityResult); - } - - /** - * @param type {@code PriorityType} representing the priority type - * @return The result applied by that {@code Priority}. - */ - public PriorityResult getPriorityResult(PriorityType type) { - return priorityResultsMap.get(type); - } - - /** - * @return the map of {@code PriorityResult} objects that represent the - * result of filtering - */ - public Map getPriorityResults() { - return priorityResultsMap; - } - - /** - * Returns the priority score of this gene based on the relevance of the - * gene as determined by a prioritiser. - * - * @return a score that will be used to rank the gene. - */ - public float getPriorityScore() { - return priorityScore; - } - - /** - * Sets the priority score for the gene. - * - * @param score - */ - public void setPriorityScore(float score) { - priorityScore = score; - } - - /** - * @return a filter score that will be used to rank the gene. - */ - public float getFilterScore() { - return this.filterScore; - } - - /** - * Set the filtering score for the gene. - * - * @param filterScore - */ - public void setFilterScore(float filterScore) { - this.filterScore = filterScore; - } - - /** - * Return the combined score of this gene based on the relevance of the gene - * (priorityScore) and the predicted effects of the variants (filterScore). - * - * @return a combined score that will be used to rank the gene. - */ - public float getCombinedScore() { - return combinedScore; - } - - public void setCombinedScore(float combinedScore) { - this.combinedScore = combinedScore; - } - - /** - * Returns true if the gene has passed all filters and at least one Variant - * associated with the Gene has also passed all filters. Will also return - * true if the gene has no variants associated with it. - */ - @Override - public boolean passedFilters() { - if (isUnfiltered()) { - return true; - } - return failedFilterTypes.isEmpty() && atLeastOneVariantPassedFilters(); - } - - private boolean isUnfiltered() { - return failedFilterTypes.isEmpty() && variantEvaluations.isEmpty(); - } - - private boolean atLeastOneVariantPassedFilters() { - for (VariantEvaluation variantEvaluation : variantEvaluations) { - if (variantEvaluation.passedFilters()) { - return true; - } - } - return false; - } - - @Override - public boolean passedFilter(FilterType filterType) { - if (!failedFilterTypes.contains(filterType) && passedFilterTypes.contains(filterType)) { - return true; - } - return atLeastOneVariantPassedFilter(filterType); - } - - private boolean atLeastOneVariantPassedFilter(FilterType filterType) { - for (VariantEvaluation variantEvaluation : variantEvaluations) { - if (variantEvaluation.passedFilter(filterType)) { - return true; - } - } - return false; - } - - private FilterStatus getFilterStatus() { - if (passedFilters()) { - return FilterStatus.PASSED; - } - return FilterStatus.FAILED; - } - - @Override - public boolean addFilterResult(FilterResult filterResult) { - filterResults.put(filterResult.getFilterType(), filterResult); - if (filterResult.getResultStatus() == FilterResultStatus.PASS) { - return addPassedFilterResult(filterResult); - } - return addFailedFilterResult(filterResult); - } - - private boolean addPassedFilterResult(FilterResult filterResult) { - passedFilterTypes.add(filterResult.getFilterType()); - return true; - } - - private boolean addFailedFilterResult(FilterResult filterResult) { - failedFilterTypes.add(filterResult.getFilterType()); - return false; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 97 * hash + Objects.hashCode(this.geneSymbol); - hash = 97 * hash + this.entrezGeneId; - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final Gene other = (Gene) obj; - if (!Objects.equals(this.geneSymbol, other.geneSymbol)) { - return false; - } - if (this.entrezGeneId != other.entrezGeneId) { - return false; - } - return true; - } - - /** - * Sort this gene based on priority and filter score. This function - * satisfies the Interface {@code Comparable}. - * - * @param other - */ - @Override - public int compareTo(Gene other) { - float thisScore = this.combinedScore; - float otherScore = other.combinedScore; - if (thisScore < otherScore) { - return 1; - } - if (thisScore > otherScore) { - return -1; - } - //if the scores are equal then return an alphabeticised list - if (thisScore == otherScore) { - return geneSymbol.compareTo(other.geneSymbol); - } - return 0; - } - - - @Override - public String toString() { - return String.format("%s entrezId=%d compatibleWith=%s filterScore=%.3f priorityScore=%.3f combinedScore=%.3f variants=%d filterStatus=%s failedFilters=%s passedFilters=%s", geneSymbol, entrezGeneId, inheritanceModes, filterScore, priorityScore, combinedScore, variantEvaluations.size(), getFilterStatus(), failedFilterTypes, passedFilterTypes); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneIdentifier.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneIdentifier.java deleted file mode 100644 index ee2efc8fa..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneIdentifier.java +++ /dev/null @@ -1,51 +0,0 @@ -/* - * To change this template, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -/** - * - * @author Jules Jacobsen - */ -public class GeneIdentifier extends ExternalIdentifier implements Comparable{ - - private final String geneSymbol; - - public GeneIdentifier(String geneSymbol, String databaseCode, String databaseAcc) { - super(databaseCode, databaseAcc); - if (geneSymbol == null || geneSymbol.isEmpty()) { - geneSymbol = "UNKNOWN"; - } - this.geneSymbol = geneSymbol; - } - - public GeneIdentifier(String geneSymbol, String compoundIdentifier) { - super(compoundIdentifier); - if (geneSymbol == null || geneSymbol.isEmpty()) { - geneSymbol = "UNKNOWN"; - } - this.geneSymbol = geneSymbol; - - } - - public String getGeneSymbol() { - return geneSymbol; - } - - /** - * - * @param other - * @return - */ - - @Override - public int compareTo(GeneIdentifier other) { - return this.geneSymbol.compareTo(other.geneSymbol); - } - - @Override - public String toString() { - return geneSymbol + "{" + super.getCompoundIdentifier() + '}'; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneModel.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneModel.java deleted file mode 100644 index 10a396e99..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneModel.java +++ /dev/null @@ -1,162 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.LinkedHashMap; -import java.util.List; -import java.util.Map; -import java.util.Objects; - -/** - * Bean for encapsulating data involved in an animal model to human gene - * association. - * - * For example the disease Pfeiffer syndrome (OMIM:101600) has a set of defined - * phenotypes encoded using HPO terms is associated with two causative genes, - * FGFR1 (Entrez:2260) and FGFR2 (Entrez:2263). - * - * There are also mouse models where the mouse homologue of FGFR1 and FGFR2 have - * been knocked-out and they too have a set of defined phenotypes. However the - * mouse phenotypes are encoded using the MPO. - * - * Due to the phenotypic similarities of the mouse knockout and/or the human - * disease it is possible to infer a likely causative gene for a given set of - * input phenotypes. - * - * @author Jules Jacobsen - */ -public class GeneModel implements Model { - - private final String modelId; - private final Organism organism; - - private final int entrezGeneId; - private final String humanGeneSymbol; - - private final String modelGeneId; - private final String modelGeneSymbol; - - private final List phenotypeIds; - - private double score = 0d; - private final Map bestPhenotypeMatchForTerms; - - public GeneModel(String modelId, Organism organism, int entrezGeneId, String humanGeneSymbol, String modelGeneId, String modelGeneSymbol, List phenotypeIds) { - this.modelId = modelId; - this.organism = organism; - - this.entrezGeneId = entrezGeneId; - this.humanGeneSymbol = humanGeneSymbol; - - this.modelGeneId = modelGeneId; - this.modelGeneSymbol = modelGeneSymbol; - - this.phenotypeIds = phenotypeIds; - this.bestPhenotypeMatchForTerms = new LinkedHashMap<>(); - } - - public String getModelGeneId() { - return modelGeneId; - } - - public String getModelGeneSymbol() { - return modelGeneSymbol; - } - - @Override - public Organism getOrganism() { - return organism; - } - - @Override - public int getEntrezGeneId() { - return entrezGeneId; - } - - @Override - public String getHumanGeneSymbol() { - return humanGeneSymbol; - } - - @Override - public String getModelId() { - return modelId; - } - - @Override - public List getPhenotypeIds() { - return phenotypeIds; - } - - @Override - public double getScore() { - return score; - } - - @Override - public void setScore(double score) { - this.score = score; - } - - @Override - public Map getBestPhenotypeMatchForTerms() { - return bestPhenotypeMatchForTerms; - } - - @Override - public void addMatchIfAbsentOrBetterThanCurrent(PhenotypeMatch match) { - PhenotypeTerm matchQueryTerm = match.getQueryPhenotype(); - if (!bestPhenotypeMatchForTerms.containsKey(matchQueryTerm)) { - bestPhenotypeMatchForTerms.put(matchQueryTerm, match); - } else if (bestPhenotypeMatchForTerms.get(matchQueryTerm).getScore() < match.getScore()) { - bestPhenotypeMatchForTerms.put(matchQueryTerm, match); - } - } - - @Override - public int hashCode() { - int hash = 3; - hash = 79 * hash + this.entrezGeneId; - hash = 79 * hash + Objects.hashCode(this.organism); - hash = 79 * hash + Objects.hashCode(this.humanGeneSymbol); - hash = 79 * hash + Objects.hashCode(this.modelId); - hash = 79 * hash + Objects.hashCode(this.phenotypeIds); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final GeneModel other = (GeneModel) obj; - if (this.organism != other.organism) { - return false; - } - if (this.entrezGeneId != other.entrezGeneId) { - return false; - } - if (!Objects.equals(this.humanGeneSymbol, other.humanGeneSymbol)) { - return false; - } - if (!Objects.equals(this.modelId, other.modelId)) { - return false; - } - if (!Objects.equals(this.phenotypeIds, other.phenotypeIds)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "GeneModel{score=" + score + ", entrezGeneId=" + entrezGeneId + ", humanGeneSymbol=" + humanGeneSymbol + ", modelId=" + modelId + ", modelSymbol=" + modelGeneSymbol + ", phenotypeIds=" + phenotypeIds + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Inheritable.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Inheritable.java deleted file mode 100644 index 8d6d30bde..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Inheritable.java +++ /dev/null @@ -1,30 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.Set; - -/** - * Interface for describing the heritability of genetic elements such as genes or - * variants. - * - * @author Jules Jacobsen - */ -public interface Inheritable { - - public Set getInheritanceModes(); - - public void setInheritanceModes(Set inheritanceModes); - - /** - * @param modeOfInheritance - * @return true if the variants for this gene are compatible with the given - * {@code ModeOfInheritance} otherwise false. - */ - public boolean isCompatibleWith(ModeOfInheritance modeOfInheritance); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/InheritanceMode.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/InheritanceMode.java deleted file mode 100644 index 1c50d33ba..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/InheritanceMode.java +++ /dev/null @@ -1,79 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model; - -/** - * Enum representing the different modes on inheritance for a disease. - * @author Jules Jacobsen - */ -public enum InheritanceMode { - - RECESSIVE("HP:0000007", "R"), - DOMINANT("HP:0000006", "D"), - //HP:0000005 is the root inheritance term - 'Mode of inheritance'. So not - //really unknown, but vague enough. - UNKNOWN("HP:0000005", "U"), - X_LINKED("HP:0001417", "X"), - X_RECESSIVE("HP:0001419", "X"), - X_DOMINANT("HP:0001423", "X"), - DOMINANT_AND_RECESSIVE("-", "B"), -// MULTIFACTORIAL("HP:0001426"), -// SPORADIC("HP:0003745"), - SOMATIC("HP:0001428", "S"), - MITOCHONDRIAL("HP:0001427", "M"), - POLYGENIC("HP:0010982", "P"), - Y_LINKED("HP:0001450", "Y"); - - - private final String hpoTerm; - //short form letter code for the inheritance mode - private final String inheritanceCode; - - private InheritanceMode(String hpoTerm, String inheritanceCode) { - this.hpoTerm = hpoTerm; - this.inheritanceCode = inheritanceCode; - } - - public String getHpoTerm() { - return hpoTerm; - } - - public String getInheritanceCode() { - return inheritanceCode; - } - - /** - * Returns the InheritanceMode for a given inheritanceCode. Will return UNKNOWN - * as a default. This is currently lossy as X could refer to either X-linked - * dominant, recessive or uncharacterised. - * @param inheritanceCode - * @return - */ - public static InheritanceMode valueOfInheritanceCode(String inheritanceCode) { - for (InheritanceMode inheritanceMode : InheritanceMode.values()) { - if (inheritanceMode.inheritanceCode.equals(inheritanceCode)) { - return inheritanceMode; - } - } - return UNKNOWN; - } - - /** - * Returns the InheritanceMode for a given HPO term. Will return UNKNOWN - * as a default. - * @param hpoTerm - * @return - */ - public static InheritanceMode valueOfHpoTerm(String hpoTerm) { - for (InheritanceMode inheritanceMode : InheritanceMode.values()) { - if (inheritanceMode.hpoTerm.equals(hpoTerm)) { - return inheritanceMode; - } - } - return UNKNOWN; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Model.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Model.java deleted file mode 100644 index 7b7487d83..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Model.java +++ /dev/null @@ -1,50 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.List; -import java.util.Map; - -/** - * Interface for encapsulating data involved in a disease/animal model to human - * gene association. This interface defines the common features of a model - - * gene and disease models are somewhat different otherwise. - * - * For example the disease Pfeiffer syndrome (OMIM:101600) has a set of defined - * phenotypes encoded using HPO terms is associated with two causative genes, - * FGFR1 (Entrez:2260) and FGFR2 (Entrez:2263). - * - * There are also mouse models where the mouse homologue of FGFR1 and FGFR2 have - * been knocked-out and they too have a set of defined phenotypes. However the - * mouse phenotypes are encoded using the MPO. - * - * Due to the phenotypic similarities of the mouse knockout and/or the human - * disease it is possible to infer a likely causative gene for a given set of - * input phenotypes. - * - * @author Jules Jacobsen - */ -public interface Model { - - public String getModelId(); - - public Organism getOrganism(); - - public int getEntrezGeneId(); - - public String getHumanGeneSymbol(); - - public List getPhenotypeIds(); - - public double getScore(); - - public void setScore(double score); - - public void addMatchIfAbsentOrBetterThanCurrent(PhenotypeMatch match); - - public Map getBestPhenotypeMatchForTerms(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Organism.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Organism.java deleted file mode 100644 index c1788e194..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Organism.java +++ /dev/null @@ -1,39 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -/** - * Enum representing the model organism present in the Exomiser database for which - * there are phenotype mappings. These are few and should not be added to - * frequently. - * - * @author Jules Jacobsen - */ -public enum Organism { - - //Not sure I really like this as it's not exactly flexible and there are alot of different species out there. - HUMAN("9606", "Homo sapiens"), - MOUSE("10090", "Mus musculus"), - FISH("7955", "Danio rerio"); - - private final String ncbiId; - private final String speciesName; - - private Organism(String ncbiId, String speciesName) { - this.ncbiId = ncbiId; - this.speciesName = speciesName; - } - - public String getNcbiId() { - return ncbiId; - } - - public String getSpeciesName() { - return speciesName; - } - - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/PhenotypeMatch.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/PhenotypeMatch.java deleted file mode 100644 index 6bb7b6352..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/PhenotypeMatch.java +++ /dev/null @@ -1,113 +0,0 @@ -/* - * To change this template, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import com.fasterxml.jackson.annotation.JsonIgnore; -import com.fasterxml.jackson.annotation.JsonProperty; -import java.util.Objects; - -/** - * Contains information about how well a pair of PhenotypeTerm - * match each other. - * - * @author Jules Jacobsen - */ -public class PhenotypeMatch { - - private final PhenotypeTerm matchPhenotype; - private final PhenotypeTerm queryPhenotype; - //lowest common subsumer - private final PhenotypeTerm lcs; - //Jaccard similarity score - private final double simJ; - private final double score; - - public PhenotypeMatch(PhenotypeTerm queryPhenotype, PhenotypeTerm matchPhenotype, double simJ, double score, PhenotypeTerm lcs) { - this.queryPhenotype = queryPhenotype; - this.matchPhenotype = matchPhenotype; - this.simJ = simJ; - this.lcs = lcs; - this.score = score; - } - - @JsonIgnore - public String getQueryPhenotypeId() { - return (queryPhenotype == null) ? "null" : queryPhenotype.getId(); - } - - @JsonProperty("a") - public PhenotypeTerm getQueryPhenotype() { - return queryPhenotype; - } - - @JsonIgnore - public String getMatchPhenotypeId() { - return (matchPhenotype == null) ? "null" : matchPhenotype.getId(); - } - - @JsonProperty("b") - public PhenotypeTerm getMatchPhenotype() { - return matchPhenotype; - } - - @JsonProperty("lcs") - public PhenotypeTerm getLcs() { - return lcs; - } - - @JsonIgnore - public double getSimJ() { - return simJ; - } - - @JsonIgnore - public double getScore() { - return score; - } - - @Override - public int hashCode() { - int hash = 5; - hash = 17 * hash + Objects.hashCode(this.matchPhenotype); - hash = 17 * hash + Objects.hashCode(this.queryPhenotype); - hash = 17 * hash + Objects.hashCode(this.lcs); - hash = 17 * hash + (int) (Double.doubleToLongBits(this.simJ) ^ (Double.doubleToLongBits(this.simJ) >>> 32)); - hash = 17 * hash + (int) (Double.doubleToLongBits(this.score) ^ (Double.doubleToLongBits(this.score) >>> 32)); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PhenotypeMatch other = (PhenotypeMatch) obj; - if (!Objects.equals(this.matchPhenotype, other.matchPhenotype)) { - return false; - } - if (!Objects.equals(this.queryPhenotype, other.queryPhenotype)) { - return false; - } - if (!Objects.equals(this.lcs, other.lcs)) { - return false; - } - if (Double.doubleToLongBits(this.simJ) != Double.doubleToLongBits(other.simJ)) { - return false; - } - if (Double.doubleToLongBits(this.score) != Double.doubleToLongBits(other.score)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "PhenotypeMatch{" + "matchPhenotype=" + matchPhenotype + ", queryPhenotype=" + queryPhenotype + ", lcs=" + lcs + ", simJ=" + simJ + ", score=" + score + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/PhenotypeTerm.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/PhenotypeTerm.java deleted file mode 100644 index a28624782..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/PhenotypeTerm.java +++ /dev/null @@ -1,72 +0,0 @@ -/* - * To change this template, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import com.fasterxml.jackson.annotation.JsonProperty; -import java.util.Objects; - -/** - * Represents a phenotype term from a phenotype ontology - e.g. the HPO, MPO, ZPO... - * @author Jules Jacobsen - */ -public class PhenotypeTerm { - - private final String id; - private final String term; - private final double ic; - - public PhenotypeTerm(String id, String term, double ic) { - this.id = id; - this.term = term; - this.ic = ic; - } - - public String getId() { - return id; - } - - @JsonProperty("label") - public String getTerm() { - return term; - } - - @JsonProperty("IC") - public double getIc() { - return ic; - } - - @Override - public int hashCode() { - int hash = 5; - hash = 97 * hash + Objects.hashCode(this.id); - hash = 97 * hash + Objects.hashCode(this.term); - hash = 97 * hash + (int) (Double.doubleToLongBits(this.ic) ^ (Double.doubleToLongBits(this.ic) >>> 32)); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PhenotypeTerm other = (PhenotypeTerm) obj; - if (!Objects.equals(this.id, other.id)) { - return false; - } - if (!Objects.equals(this.term, other.term)) { - return false; - } - return Double.doubleToLongBits(this.ic) == Double.doubleToLongBits(other.ic); - } - - @Override - public String toString() { - return "PhenotypeTerm{" + "id=" + id + ", term=" + term + ", ic=" + ic + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/RegulatoryFeature.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/RegulatoryFeature.java deleted file mode 100644 index 908e19385..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/RegulatoryFeature.java +++ /dev/null @@ -1,95 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.jannovar.annotation.VariantEffect; - -/** - * @author Jules Jacobsen - */ -public class RegulatoryFeature implements ChromosomalRegion { - - public enum FeatureType {ENHANCER, TF_BINDING_SITE, PROMOTER, PROMOTER_FLANKING_REGION, CTCF_BINDING_SITE, OPEN_CHROMATIN, FANTOM_PERMISSIVE, UNKNOWN}; - - private final int chromosome; - private final int start; - private final int end; - private final FeatureType featureType; - - public RegulatoryFeature(int chromosome, int start, int end, FeatureType featureType) { - this.chromosome = chromosome; - this.start = start; - this.end = end; - this.featureType = featureType; - } - - public int getChromosome() { - return chromosome; - } - - public int getStart() { - return start; - } - - public int getEnd() { - return end; - } - - public FeatureType getFeatureType() { - return featureType; - } - - public VariantEffect getVariantEffect() { - return VariantEffect.REGULATORY_REGION_VARIANT; - } - - @Override - public boolean equals(Object o) { - if (this == o) return true; - if (o == null || getClass() != o.getClass()) return false; - - RegulatoryFeature that = (RegulatoryFeature) o; - - if (chromosome != that.chromosome) return false; - if (start != that.start) return false; - if (end != that.end) return false; - return featureType == that.featureType; - - } - - @Override - public int hashCode() { - int result = chromosome; - result = 31 * result + start; - result = 31 * result + end; - result = 31 * result + (featureType != null ? featureType.hashCode() : 0); - return result; - } - - @Override - public String toString() { - return "RegulatoryFeature{" + - "chromosome=" + chromosome + - ", start=" + start + - ", end=" + end + - ", featureType=" + featureType + - '}'; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/SampleData.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/SampleData.java deleted file mode 100644 index 6f7a73f20..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/SampleData.java +++ /dev/null @@ -1,179 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.jannovar.pedigree.Pedigree; -import htsjdk.variant.vcf.VCFHeader; - -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.List; -import java.util.Objects; - -/** - * Class to encapsulate the patient data from a VCF file and their pedigree. - * - * @author Jules Jacobsen - */ -public class SampleData { - - /** - * Store the path of the file used to create this data. - */ - private Path vcfPath; - private Path pedPath; - - /** - * Header of the VCF file. - */ - private VCFHeader vcfHeader; - - /** - * Total number of samples (sequenced persons) in the input VCF file. - */ - private int numSamples = 0; - /** - * List of all sample names of VCF file - */ - private List sampleNames; - /** - * Pedigree of the persons whose samples were sequenced. Created on the - * basis of a PED file for multisample VCF files, or as a default - * single-sample Pedigree for single-sample VCF files. - */ - private Pedigree pedigree; - - private List variantEvaluations; - - private List genes; - - public SampleData() { - this.sampleNames = new ArrayList<>(); - this.variantEvaluations = new ArrayList<>(); - this.genes = new ArrayList<>(); - } - - public SampleData(Path vcfPath, Path pedPath) { - this.vcfPath = vcfPath; - this.pedPath = pedPath; - this.sampleNames = new ArrayList<>(); - this.variantEvaluations = new ArrayList<>(); - this.genes = new ArrayList<>(); - } - - /** - * @return List of Strings representing the sample names in the VCF file. - */ - public List getSampleNames() { - return sampleNames; - } - - public void setSampleNames(List sampleNames) { - this.sampleNames = sampleNames; - } - - /** - * @return the number of samples represented in the VCF file. - */ - public int getNumberOfSamples() { - return numSamples; - } - - public void setNumberOfSamples(int numSamples) { - this.numSamples = numSamples; - } - - public Path getVcfPath() { - return vcfPath; - } - - public void setVcfPath(Path vcfPath) { - this.vcfPath = vcfPath; - } - - public void setPedPath(Path pedPath) { - this.pedPath = pedPath; - } - - public Path getPedPath() { - return pedPath; - } - - public VCFHeader getVcfHeader() { - return vcfHeader; - } - - public void setVcfHeader(VCFHeader vcfHeader) { - this.vcfHeader = vcfHeader; - } - - public List getVariantEvaluations() { - return variantEvaluations; - } - - public void setVariantEvaluations(List variantList) { - this.variantEvaluations = variantList; - } - - public Pedigree getPedigree() { - return pedigree; - } - - public void setPedigree(Pedigree pedigree) { - this.pedigree = pedigree; - } - - public List getGenes() { - return genes; - } - - public void setGenes(List geneList) { - this.genes = geneList; - } - - public List getUnAnnotatedVariantEvaluations() { - List unannotatedList = new ArrayList<>(); - for (VariantEvaluation varEval : variantEvaluations) { - if (!varEval.hasAnnotations()) { - unannotatedList.add(varEval); - } - } - return unannotatedList; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 59 * hash + Objects.hashCode(this.vcfPath); - hash = 59 * hash + Objects.hashCode(this.pedPath); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final SampleData other = (SampleData) obj; - if (!Objects.equals(this.vcfPath, other.vcfPath)) { - return false; - } - if (!Objects.equals(this.pedPath, other.pedPath)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "SampleData{" + "vcfPath=" + vcfPath + ", pedPath=" + pedPath + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/TopologicalDomain.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/TopologicalDomain.java deleted file mode 100644 index d741d15a3..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/TopologicalDomain.java +++ /dev/null @@ -1,100 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model; - -import java.util.Map; - -/** - * Represents a topological domain of a piece of chromatin - * - * @author Jules Jacobsen - */ -public class TopologicalDomain implements ChromosomalRegion { - - private final int chromosome; - private final int start; - private final int end; - private final Map genes; - - public TopologicalDomain(int chromosome, int start, int end, Map genes) { - this.chromosome = chromosome; - this.start = start; - this.end = end; - this.genes = genes; - } - - public int getChromosome() { - return chromosome; - } - - public int getStart() { - return start; - } - - public int getEnd() { - return end; - } - - public Map getGenes() { - return genes; - } - - public boolean containsPosition(VariantCoordinates variantCoordinates) { - if (variantCoordinates.getChromosome() == chromosome) { - int variantPosition = variantCoordinates.getPosition(); - return start <= variantPosition && end >= variantPosition; - } - return false; - } - - @Override - public boolean equals(Object o) { - if (this == o) return true; - if (o == null || getClass() != o.getClass()) return false; - - TopologicalDomain that = (TopologicalDomain) o; - - if (chromosome != that.chromosome) return false; - if (start != that.start) return false; - if (end != that.end) return false; - return genes.equals(that.genes); - - } - - @Override - public int hashCode() { - int result = chromosome; - result = 31 * result + start; - result = 31 * result + end; - result = 31 * result + genes.hashCode(); - return result; - } - - @Override - public String toString() { - return "TopologicalDomain{" + - "chromosome=" + chromosome + - ", start=" + start + - ", end=" + end + - ", genes=" + genes + - '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Variant.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Variant.java deleted file mode 100644 index 0543339c6..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/Variant.java +++ /dev/null @@ -1,107 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.jannovar.annotation.Annotation; -import de.charite.compbio.jannovar.annotation.VariantEffect; - -import java.util.EnumSet; -import java.util.List; -import java.util.Set; - -/** - * - * @author Jules Jacobsen - */ -public interface Variant extends VariantCoordinates { - - static final Set codingVariantEffects = EnumSet.of( - VariantEffect.STOP_LOST, - VariantEffect.STOP_RETAINED_VARIANT, - VariantEffect.STOP_GAINED, - VariantEffect.START_LOST, - VariantEffect.SYNONYMOUS_VARIANT, - VariantEffect.SPLICE_REGION_VARIANT, - VariantEffect.SPLICE_ACCEPTOR_VARIANT, - VariantEffect.SPLICE_DONOR_VARIANT, - VariantEffect.FRAMESHIFT_ELONGATION, - VariantEffect.FRAMESHIFT_TRUNCATION, - VariantEffect.FRAMESHIFT_VARIANT, - VariantEffect.MISSENSE_VARIANT, - VariantEffect.MNV, - VariantEffect.FEATURE_TRUNCATION, - VariantEffect.DISRUPTIVE_INFRAME_DELETION, - VariantEffect.DISRUPTIVE_INFRAME_INSERTION, - VariantEffect.INFRAME_DELETION, - VariantEffect.INFRAME_INSERTION, - VariantEffect.INTERNAL_FEATURE_ELONGATION, - VariantEffect.COMPLEX_SUBSTITUTION - ); - - static final Set regulatoryNonCodingVariantEffects = EnumSet.of( - VariantEffect.MIRNA, - VariantEffect.REGULATORY_REGION_VARIANT, - VariantEffect.FIVE_PRIME_UTR_PREMATURE_START_CODON_GAIN_VARIANT, - VariantEffect.FIVE_PRIME_UTR_TRUNCATION, - VariantEffect.FIVE_PRIME_UTR_VARIANT, - VariantEffect.TF_BINDING_SITE_VARIANT, - VariantEffect.THREE_PRIME_UTR_TRUNCATION, - VariantEffect.THREE_PRIME_UTR_VARIANT - ); - - default public boolean isNonCodingVariant() { - return !codingVariantEffects.contains(getVariantEffect()); - } - - public double getPhredScore(); - - public boolean isXChromosomal(); - - public boolean isYChromosomal(); - - public boolean isOffExome(); - - public VariantEffect getVariantEffect(); - - public void setVariantEffect(VariantEffect ve); - - public List getAnnotations(); - - public String getGeneSymbol(); - - public int getEntrezGeneId(); - - public void setEntrezGeneId(int id); - - public void setGeneSymbol(String symbol); - - public void setAnnotations(List alist); - - /** - * @return a String such as chr6:g.29911092G>T - */ - public String getChromosomalVariant(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/VariantCoordinates.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/VariantCoordinates.java deleted file mode 100644 index 60516e28d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/VariantCoordinates.java +++ /dev/null @@ -1,43 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -/** - * - * - * @author Jules Jacobsen - */ -public interface VariantCoordinates { - - /** - * @return integer representation of the chromosome - */ - public int getChromosome(); - - /** - * @return String representation of the chromosome. Chromosomes 1-22 will return - * a string value of their number. Sex chromosomes 23=X 24=Y and mitochondrial 25=M. - */ - public String getChromosomeName(); - - /** - * @return 1-based position of the variant on the chromosome - */ - public int getPosition(); - - /** - * @return String with the reference allele in the variant, without common - * suffix or prefix to reference allele. - */ - public String getRef(); - - /** - * @return String with the alternative allele in the variant, without common - * suffix or prefix to reference allele. - */ - public String getAlt(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/VariantEvaluation.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/VariantEvaluation.java deleted file mode 100644 index 76bc7429d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/VariantEvaluation.java +++ /dev/null @@ -1,797 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model; - -import com.google.common.base.Joiner; -import de.charite.compbio.exomiser.core.filters.FilterResultStatus; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.filters.FilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.model.pathogenicity.VariantTypePathogenicityScores; -import de.charite.compbio.jannovar.annotation.Annotation; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import htsjdk.variant.variantcontext.Allele; -import htsjdk.variant.variantcontext.Genotype; -import htsjdk.variant.variantcontext.GenotypeBuilder; -import htsjdk.variant.variantcontext.VariantContext; -import htsjdk.variant.variantcontext.VariantContextBuilder; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.EnumSet; -import java.util.LinkedHashMap; -import java.util.List; -import java.util.Map; -import java.util.Objects; -import java.util.Set; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * This class is a wrapper for the {@code Variant} class from the jannovar - * hierarchy, and additionally includes all of the information on pathogenicity - * and frequency that is added to each variant by the Exomizer program. - * - * @author Jules Jacobsen - * @author Peter Robinson - */ -public class VariantEvaluation implements Comparable, Filterable, Inheritable, Variant { - - private static final Logger logger = LoggerFactory.getLogger(VariantEvaluation.class); - - //threshold over which a variant effect score is considered pathogenic - private static final float DEFAULT_PATHOGENICITY_THRESHOLD = 0.5f; - - // HTSJDK {@link VariantContext} instance of this allele - private final VariantContext variantContext; - - // numeric index of the alternative allele in {@link #vc}. - private final int altAlleleId; - - //VariantCoordinates variables - these are a minimal requirement for describing a variant - private final int chr; - private final String chromosomeName; - private final int pos; - private final String ref; - private final String alt; - - //Variant variables, for a richer more VCF-like experience - private final int numIndividuals; - private final double phredScore; - - //Jannovar annotations - private final boolean isOffExome; - private VariantEffect variantEffect; - private List annotations; - private String geneSymbol; - private int entrezGeneId; - private final String chromosomalVariant; - - //results from filters - private final Map passedFilterResultsMap; - private final Set failedFilterTypes; - - //score-related stuff - private FrequencyData frequencyData; - private PathogenicityData pathogenicityData; - - //bit of an orphan variable - look into refactoring this - private List mutationRefList = null; - - private VariantEvaluation(VariantBuilder builder) { - chr = builder.chr; - chromosomeName = builder.chromosomeName; - pos = builder.pos; - ref = builder.ref; - alt = builder.alt; - - numIndividuals = builder.numIndividuals; - phredScore = builder.phredScore; - isOffExome = builder.isOffExome; - variantEffect = builder.variantEffect; - annotations = builder.annotations; - geneSymbol = builder.geneSymbol; - entrezGeneId = builder.entrezGeneId; - chromosomalVariant = builder.chromosomalVariant; - - variantContext = builder.variantContext; - altAlleleId = builder.altAlleleId; - - passedFilterResultsMap = new LinkedHashMap<>(); - failedFilterTypes = EnumSet.noneOf(FilterType.class); - - frequencyData = builder.frequencyData; - pathogenicityData = builder.pathogenicityData; - } - - /** - * @return an integer representing the chromosome. 1-22 are obvious, - * chrX=23, ChrY=24, ChrM=25. - */ - @Override - public int getChromosome() { - return chr; - } - - /** - * @return a String such "4" or "X" in the case of chromosome 23 - */ - @Override - public String getChromosomeName() { - return chromosomeName; - } - - /** - * @return Return the 1-based start position of the variant on its - * chromosome. - */ - @Override - public int getPosition() { - return pos; - } - - /** - * @return reference allele, or "-" in case of insertions. - */ - @Override - public String getRef() { - return ref; - } - - /** - * @return alternative allele, or "-" in case of deletions. - */ - @Override - public String getAlt() { - return alt; - } - - public VariantContext getVariantContext() { - return variantContext; - } - - public int getAltAlleleId() { - return altAlleleId; - } - - @Override - public double getPhredScore() { - return phredScore; - } - - /** - * @return the most prevalent {@link VariantEffect} such as {@link VariantEffect#MISSENSE_VARIANT}, - * {@link VariantEffect#FRAMESHIFT_ELONGATION}, etc., or null - * if there is no annotated effect. - */ - @Override - public VariantEffect getVariantEffect() { - return variantEffect; - } - - @Override - public void setVariantEffect (VariantEffect ve){ - variantEffect = ve; - } - - /** - * @return the gene symbol associated with the variant. - */ - @Override - public String getGeneSymbol() { - return geneSymbol; - } - - @Override - public void setGeneSymbol(String symbol) { - geneSymbol = symbol; - } - - @Override - public int getEntrezGeneId() { - return entrezGeneId; - } - - @Override - public void setEntrezGeneId(int id) { - entrezGeneId = id; - } - - @Override - public boolean isXChromosomal() { - return chr == 23; - } - - @Override - public boolean isYChromosomal() { - return chr == 24; - } - - /** - * @return true if the variant belongs to a class that is non-exonic and - * non-splicing. - */ - @Override - public boolean isOffExome() { - return isOffExome; - } - - /** - * This function returns a list of all of the - * {@link de.charite.compbio.jannovar.annotation.Annotation Annotation} objects that have been - * associated with the current variant. This function can be called if - * client code wants to display one line for each affected transcript, e.g., - *

    - *
  • LTF(uc003cpr.3:exon5:c.30_31insAAG:p.R10delinsRR) - *
  • LTF(uc003cpq.3:exon2:c.69_70insAAG:p.R23delinsRR) - *
  • LTF(uc010hjh.3:exon2:c.69_70insAAG:p.R23delinsRR) - *
- *

- * If client code wants instead to display just a single string that - * summarizes all of the annotations, it should call the function - * {@link #getRepresentativeAnnotation}. - */ - @Override - public List getAnnotations() { - return annotations; - } - - @Override - public void setAnnotations(List alist) { - annotations = alist; - } - - public boolean hasAnnotations() { - return !getAnnotations().isEmpty(); - } - -// /** -// * This function returns a list of all of the -// * {@link jannovar.annotation.Annotation Annotation} objects that have been -// * associated with the current variant. This function can be called if -// * client code wants to display one line for each affected transcript, e.g., -// *

    -// *
  • LTF(uc003cpr.3:exon5:c.30_31insAAG:p.R10delinsRR) -// *
  • LTF(uc003cpq.3:exon2:c.69_70insAAG:p.R23delinsRR) -// *
  • LTF(uc010hjh.3:exon2:c.69_70insAAG:p.R23delinsRR) -// *
-// *

-// * If client code wants instead to display just a single string that -// * summarizes all of the annotations, it should call the function -// * {@link #getRepresentativeAnnotation}. -// */ -// public List getAnnotationsWithoutGeneSymbols() { -// List lst = variant.getAnnotations(); -// for (String s : lst) { -// int i = s.indexOf("("); -// if (i < 0) { -// continue; -// } -// int j = s.indexOf(")", i); -// if (j < 0) { -// continue; -// } -// s = s.substring(i + 1, j); -// } -// return lst; -// } - - /** - * @return a String such as chr6:g.29911092G>T - */ - @Override - public String getChromosomalVariant() { - return chromosomalVariant; - } - - public String getGenotypeAsString() { - // collect genotype string list - List gtStrings = new ArrayList<>(); - for (Genotype gt : variantContext.getGenotypes()) { - boolean firstAllele = true; - StringBuilder builder = new StringBuilder(); - for (Allele allele : gt.getAlleles()) { - if (firstAllele) { - firstAllele = false; - } else { - builder.append('/'); - } - - if (allele.isNoCall()) { - builder.append('.'); - } else if (allele.equals(variantContext.getAlternateAllele(altAlleleId))) { - builder.append('1'); - } else { - builder.append('0'); - } - } - gtStrings.add(builder.toString()); - } - - // normalize 1/0 to 0/1 and join genotype strings with colon - for (int i = 0; i < gtStrings.size(); ++i) { - if (gtStrings.get(i).equals("1/0")) { - gtStrings.set(i, "0/1"); - } - } - return Joiner.on(":").join(gtStrings); - } - - /** - * @return the number of individuals with a genotype at this variant. - */ - public int getNumberOfIndividuals() { - return numIndividuals; - } - - /** - * Add a mutation from ClinVar or HGMD to {@link #mutationRefList}. Note - * that for now, we code this as cv|url or hd|url to save space. - * - * @param anch An HTML anchor element. - */ - public void addMutationReference(String anch) { - if (this.mutationRefList == null) { - this.mutationRefList = new ArrayList<>(); - } - this.mutationRefList.add(anch); - } - - /** - * @return list of ClinVar and HGMD references for this position. Note, it - * returns an empty (but non-null) list if no mutations were found. - */ - public List getMutationReferenceList() { - if (this.mutationRefList == null) { - return new ArrayList<>(); - } else { - return this.mutationRefList; - } - } - - /** - * @return the map of FilterResult objects that represent the result of - * filtering - */ - public Map getFilterResults() { - return passedFilterResultsMap; - } - - /** - * This method is used to add a {@code FilterResult} object to this variant. - * Such objects represent the results of running the variant through a - * {@code Filter}. - * - * @param filterResult - * @return - */ - @Override - public boolean addFilterResult(FilterResult filterResult) { - if (filterResult.getResultStatus() == FilterResultStatus.PASS) { - return addPassedFilterResult(filterResult); - } - return addFailedFilterResult(filterResult); - } - - private boolean addPassedFilterResult(FilterResult filterResult) { - passedFilterResultsMap.put(filterResult.getFilterType(), filterResult); - return true; - } - - private boolean addFailedFilterResult(FilterResult filterResult) { - failedFilterTypes.add(filterResult.getFilterType()); - return false; - } - - /** - * @return the Set of {@code FilterType} which the {@code VariantEvaluation} - * failed to pass. - */ - public Set getFailedFilterTypes() { - return failedFilterTypes; - } - - /** - * We're making the assumption that all variants will pass a filter, so if - * no filters have been applied, this method will return true. Once a - * {@link VariantEvaluation} has been filtered this will return true until - * the {@link VariantEvaluation} has failed a filter. - *

- * Note: This may change so that passed/failed/unfiltered can only ever be - * true for one status. - * - * @return - */ - @Override - public boolean passedFilters() { - return failedFilterTypes.isEmpty(); - } - - @Override - public boolean passedFilter(FilterType filterType) { - return !failedFilterTypes.contains(filterType) && passedFilterResultsMap.containsKey(filterType); - } - - private boolean isUnFiltered() { - return (failedFilterTypes.isEmpty() && passedFilterResultsMap.isEmpty()); - } - - public FilterStatus getFilterStatus() { - if (isUnFiltered()) { - return FilterStatus.UNFILTERED; - } - if (passedFilters()) { - return FilterStatus.PASSED; - } - return FilterStatus.FAILED; - } - - public FilterResult getFilterResult(FilterType filterType) { - return passedFilterResultsMap.get(filterType); - } - - - /** - * Returns the variant score (prediction of the pathogenicity - * and relevance of the Variant) by combining the frequency and pathogenicity scores for this variant. - * - * @return a score between 0 and 1 - */ - public float getVariantScore() { - return getFrequencyScore() * getPathogenicityScore(); - } - - /** - * @return a score between 0 and 1 - */ - public float getFrequencyScore() { - return frequencyData.getScore(); - } - - /** - * Some variants such as splice site variants, are assumed to be pathogenic. At the moment no particular - * software is used to evaluate this, we merely take the variant class from the Jannovar code and assign a score. - * - * Note that we use results of filtering to remove Variants that are predicted to be simply non-pathogenic. However, - * amongst variants predicted to be potentially pathogenic, there are different strengths of prediction, which is - * what this score tries to reflect. - * - * For missense mutations, we use the predictions of MutationTaster, polyphen, and SIFT taken from the data from - * the dbNSFP project. - * - * The score returned here is therefore an overall pathogenicity score defined on the basis of - * "medical genetic intuition". - - * @return a score between 0 and 1 - */ - public float getPathogenicityScore() { - if (pathogenicityData.hasPredictedScore()) { - return pathogenicityData.getScore(); - } - //this will return 0 for SEQUENCE_VARIANT effects (i.e. unknown) - //return the default score - in time we might want to use the predicted score if there are any and handle things like the missense variants. - return VariantTypePathogenicityScores.getPathogenicityScoreOf(variantEffect); - } - - /* - * Retained in case we have some non-missesnse variants in the database. Shouldn't be needed though. - */ - private float calculateMissenseScore(PathogenicityData pathogenicityData) { - if (pathogenicityData.hasPredictedScore()) { - return pathogenicityData.getScore(); - } - return VariantTypePathogenicityScores.DEFAULT_MISSENSE_SCORE; - } - - public FrequencyData getFrequencyData() { - return frequencyData; - } - - public void setFrequencyData(FrequencyData frequencyData) { - this.frequencyData = frequencyData; - } - - public PathogenicityData getPathogenicityData() { - return pathogenicityData; - } - - public void setPathogenicityData(PathogenicityData pathogenicityData) { - this.pathogenicityData = pathogenicityData; - } - - /** - * @return true or false depending on whether the variant effect is considered pathogenic. Pathogenoic variants are - * considered to be those with a pathogenicity score greater than 0.5. Missense variants will always return true. - */ - public boolean isPredictedPathogenic() { - if (variantEffect == VariantEffect.MISSENSE_VARIANT) { - //we're making the assumption that a missense variant is always potentially pathogenic. - //Given the prediction scores are predictions, they could fall below the default threshold so - //we'll leave it up to the user to decide - return true; - } else { - return getPathogenicityScore() >= DEFAULT_PATHOGENICITY_THRESHOLD; - } - } - - Set inheritanceModes = EnumSet.noneOf(ModeOfInheritance.class); - - @Override - public void setInheritanceModes(Set compatibleModes) { - if (compatibleModes.isEmpty()) { - inheritanceModes = EnumSet.noneOf(ModeOfInheritance.class); - } else { - this.inheritanceModes = EnumSet.copyOf(compatibleModes); - } - } - - @Override - public Set getInheritanceModes() { - return inheritanceModes; - } - - @Override - public boolean isCompatibleWith(ModeOfInheritance modeOfInheritance) { - return inheritanceModes.contains(modeOfInheritance); - } - - /** - * Sorts variants according to their natural ordering of genome position. Variants are sorted according to - * chromosome number, chromosome position, reference sequence then alternative sequence. - * - * @param other - * @return comparator score consistent with equals. - */ - @Override - public int compareTo(VariantEvaluation other) { - if (this.chr != other.chr) { - return Integer.compare(this.chr, other.chr); - } - if (this.pos != other.pos) { - return Integer.compare(this.pos, other.pos); - } - if (!this.ref.equals(other.ref)) { - return this.ref.compareTo(other.ref); - } - return this.alt.compareTo(other.alt); - } - - @Override - public int hashCode() { - int hash = 3; - hash = 71 * hash + this.chr; - hash = 71 * hash + this.pos; - hash = 71 * hash + Objects.hashCode(this.ref); - hash = 71 * hash + Objects.hashCode(this.alt); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final VariantEvaluation other = (VariantEvaluation) obj; - if (this.chr != other.chr) { - return false; - } - if (this.pos != other.pos) { - return false; - } - if (!Objects.equals(this.ref, other.ref)) { - return false; - } - if (!Objects.equals(this.alt, other.alt)) { - return false; - } - return true; - } - - public String toString() { - //TODO: expose variantEffect, frequency and pathogenicity scores? - return "chr=" + chr + " pos=" + pos + " ref=" + ref + " alt=" + alt + " qual=" + phredScore + " " + variantEffect + " score=" + getVariantScore() + " " + getFilterStatus() + " failedFilters=" + failedFilterTypes + " passedFilters=" + passedFilterResultsMap.keySet() + " compatibleWith=" + inheritanceModes; - } - - /** - * Builder class for producing a valid VariantEvaluation. - */ - public static class VariantBuilder { - - private int chr; - private String chromosomeName; - private int pos; - private String ref; - private String alt; - - private int numIndividuals = 1; - private double phredScore = 0; - - private boolean isOffExome; - private VariantEffect variantEffect = VariantEffect.SEQUENCE_VARIANT; - private List annotations = Collections.emptyList(); - private String geneSymbol = "."; - private int entrezGeneId = -1; - private String chromosomalVariant; - - private VariantContext variantContext; - private int altAlleleId; - - private PathogenicityData pathogenicityData = PathogenicityData.EMPTY_DATA; - private FrequencyData frequencyData = FrequencyData.EMPTY_DATA; - - /** - * Creates a minimal variant - * - * @param chr - * @param pos - * @param ref - * @param alt - */ - public VariantBuilder(int chr, int pos, String ref, String alt) { - this.chr = chr; - this.pos = pos; - this.ref = ref; - this.alt = alt; - } - - public VariantBuilder chromosomeName(String chromosomeName) { - this.chromosomeName = chromosomeName; - return this; - } - - /** - * Safety method to handle creating the chromosome name in cases where - * the name is not explicitly set. This should happen in the - * VariantFactory, but for testing we're happy with a sensible default - * value. It's not critical, but is nice to prevent a lot of silly - * duplicate code. - * - * @param chr - * @return - */ - private String buildChromosomeName(int chr) { - switch (chr) { - case 23: - return "X"; - case 24: - return "Y"; - case 25: - return "M"; - default: - return String.valueOf(chr); - } - } - - // Change can be null for unknown references, or may not be set. Just in case, we'll hack something together. - private String buildChromosomalVariant(int chr, int pos, String ref, String alt) { - return chr + ":g." + pos + ref + ">" + alt; - } - - public VariantBuilder variantContext(VariantContext variantContext) { - this.variantContext = variantContext; - return this; - } - - /** - * @return a generic one-based position variant context with a heterozygous genotype with no attributes. - */ - private VariantContext buildVariantContext(int chr, int pos, String ref, String alt, double qual) { - Allele refAllele = Allele.create(ref, true); - Allele altAllele = Allele.create(alt); - List alleles = Arrays.asList(refAllele, altAllele); - - VariantContextBuilder vcBuilder = new VariantContextBuilder(); - - // build Genotype - GenotypeBuilder gtBuilder = new GenotypeBuilder("sample").noAttributes(); - //default to HETEROZYGOUS - gtBuilder.alleles(alleles); -// gtBuilder.attribute("RD", readDepth); - - // build VariantContext - vcBuilder.loc("chr" + chr, pos, (pos - 1) + ref.length()); - vcBuilder.alleles(alleles); - vcBuilder.genotypes(gtBuilder.make()); -// vcBuilder.attribute("RD", readDepth); - vcBuilder.log10PError(-0.1 * qual); - - return vcBuilder.make(); - } - - public VariantBuilder altAlleleId(int altAlleleId) { - this.altAlleleId = altAlleleId; - return this; - } - - public VariantBuilder quality(double phredScore) { - this.phredScore = phredScore; - return this; - } - - public VariantBuilder numIndividuals(int numIndividuals) { - this.numIndividuals = numIndividuals; - return this; - } - - public VariantBuilder isOffExome(boolean isOffExome) { - this.isOffExome = isOffExome; - return this; - } - - public VariantBuilder variantEffect(VariantEffect variantEffect) { - this.variantEffect = variantEffect; - return this; - } - - public VariantBuilder annotations(List annotations) { - this.annotations = annotations; - return this; - } - - public VariantBuilder geneSymbol(String geneSymbol) { - if (geneSymbol.equals(".")) { - this.geneSymbol = geneSymbol; - } else { - String[] tokens = geneSymbol.split(","); - this.geneSymbol = tokens[0]; - } - return this; - } - - public VariantBuilder geneId(int geneId) { - this.entrezGeneId = geneId; - return this; - } - - public VariantBuilder pathogenicityData(PathogenicityData pathogenicityData) { - this.pathogenicityData = pathogenicityData; - return this; - } - - public VariantBuilder frequencyData(FrequencyData frequencyData) { - this.frequencyData = frequencyData; - return this; - } - - public VariantEvaluation build() { - if (chromosomeName == null) { - chromosomeName = buildChromosomeName(chr); - } - - if (chromosomalVariant == null) { - chromosomalVariant = buildChromosomalVariant(chr, pos, ref, alt); - } - - if (variantContext == null) { - variantContext = buildVariantContext(chr, pos, ref, alt, phredScore); - } - return new VariantEvaluation(this); - } - - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/Frequency.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/Frequency.java deleted file mode 100644 index 108d70e02..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/Frequency.java +++ /dev/null @@ -1,70 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.frequency; - -import java.util.Objects; - -/** - * - * @author Jules Jacobsen - */ -public class Frequency { - - private final float frequency; - private final FrequencySource source; - - public Frequency(float frequency) { - this.frequency = frequency; - this.source = FrequencySource.UNKNOWN; - } - - public Frequency(float frequency, FrequencySource source) { - this.frequency = frequency; - this.source = source; - } - - public float getFrequency() { - return frequency; - } - - public FrequencySource getSource() { - return source; - } - - public boolean isOverThreshold(float threshold) { - return frequency > threshold; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 67 * hash + Float.floatToIntBits(this.frequency); - hash = 67 * hash + Objects.hashCode(this.source); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final Frequency other = (Frequency) obj; - if (this.source != other.source) { - return false; - } - return Float.floatToIntBits(this.frequency) == Float.floatToIntBits(other.frequency); - } - - @Override - public String toString() { - return "Frequency{" + frequency + " source=" + source + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyData.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyData.java deleted file mode 100644 index e41633575..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyData.java +++ /dev/null @@ -1,212 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.frequency; - -import static de.charite.compbio.exomiser.core.model.frequency.FrequencySource.*; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.EnumMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Objects; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Frequency data for the variant from the Thousand Genomes, the Exome Server - * Project and Broad ExAC datasets. - * - * Note that the frequency data are expressed as percentages. - * - * @author Jules Jacobsen - */ -public class FrequencyData { - - private static final Logger logger = LoggerFactory.getLogger(FrequencyData.class); - - private final RsId rsId; - - private final Map knownFrequencies; - - public static final FrequencyData EMPTY_DATA = new FrequencyData(); - - public FrequencyData() { - this.rsId = null; - this.knownFrequencies = Collections.emptyMap(); - } - - public FrequencyData(RsId rsId, Frequency... frequency) { - this(rsId, new HashSet<>(Arrays.asList(frequency))); - } - - public FrequencyData(RsId rsId, Set frequencies) { - this.rsId = rsId; - knownFrequencies = new EnumMap(FrequencySource.class); - for (Frequency frequency : frequencies) { - knownFrequencies.put(frequency.getSource(), frequency); - } - } - - //TODO: RSID ought to belong to the Variant, not the frequencyData - public RsId getRsId() { - return rsId; - } - - public Frequency getFrequencyForSource(FrequencySource source) { - return knownFrequencies.get(source); - } - - /** - * @return true if this variant is at all represented in dbSNP or ESP data, - * regardless of frequency. That is, if the variant has an RS id in dbSNP or - * any frequency data at all, return true, otherwise false. - */ - public boolean isRepresentedInDatabase() { - if (rsId != null) { - return true; - } - return !knownFrequencies.isEmpty(); - } - - public boolean hasDbSnpData() { - return knownFrequencies.containsKey(THOUSAND_GENOMES); - } - - public boolean hasDbSnpRsID() { - return rsId != null; - } - - public boolean hasEspData() { - for (FrequencySource dataSource : knownFrequencies.keySet()) { - switch (dataSource) { - case ESP_AFRICAN_AMERICAN: - case ESP_EUROPEAN_AMERICAN: - case ESP_ALL: - return true; - } - } - return false; - } - - public boolean hasExacData() { - for (FrequencySource dataSource : knownFrequencies.keySet()) { - switch (dataSource) { - case EXAC_AFRICAN_INC_AFRICAN_AMERICAN: - case EXAC_AMERICAN: - case EXAC_EAST_ASIAN: - case EXAC_FINNISH: - case EXAC_NON_FINNISH_EUROPEAN: - case EXAC_OTHER: - case EXAC_SOUTH_ASIAN: - return true; - } - } - return false; - } - - /** - * Returns a list of Frequency objects. If there is no known frequency data - * then an empty list will be returned. - * - * @return a List of Frequency data - */ - public List getKnownFrequencies() { - return new ArrayList(knownFrequencies.values()); - } - - /** - * Returns a the maximum frequency - if there are no known frequencies/ no - * frequency data it will return 0. - * - * @return - */ - public float getMaxFreq() { - //TODO this is analagous to PathogenicityData.getMostPathogenicScore() - //TODO so should really return a Frequency object... - float maxFreq = 0f; - for (Frequency freq : knownFrequencies.values()) { - //TODO ...but frequency needs to implement comparable first - maxFreq = Math.max(maxFreq, freq.getFrequency()); - } - return maxFreq; - } - - @Override - public int hashCode() { - int hash = 5; - hash = 29 * hash + Objects.hashCode(this.rsId); - hash = 29 * hash + Objects.hashCode(this.knownFrequencies); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final FrequencyData other = (FrequencyData) obj; - if (!Objects.equals(this.rsId, other.rsId)) { - return false; - } - if (!Objects.equals(this.knownFrequencies, other.knownFrequencies)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "FrequencyData{" + "rsId=" + rsId + ", knownFrequencies=" + knownFrequencies.values() + '}'; - } - - private static final float VERY_RARE_SCORE = 1f; - private static final float NOT_RARE_SCORE = 0f; - - /** - * @return returns a numerical value that is closer to one, the rarer - * the variant is. If a variant is not entered in any of the data - * sources, it returns one (highest score). Otherwise, it identifies the - * maximum MAF in any of the databases, and returns a score that depends on - * the MAF. Note that the frequency is expressed as a percentage. - */ - public float getScore() { - - float max = getMaxFreq(); - - if (max <= 0) { - return VERY_RARE_SCORE; - } else if (max > 2) { - return NOT_RARE_SCORE; - } else { - return 1f - (0.13533f * (float) Math.exp(max)); - } - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/FrequencySource.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/FrequencySource.java deleted file mode 100644 index 995dc63f8..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/FrequencySource.java +++ /dev/null @@ -1,55 +0,0 @@ -/* - * To change this template, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.frequency; - -import java.util.EnumSet; -import java.util.Set; - -/** - * Enum describing where the frequency data has originated. - * - * @author Damian Smedley - * @author Jules Jacobsen - */ -public enum FrequencySource { - - UNKNOWN("unknown"), - //Frequencies from a local datasource - LOCAL("Local"), - - //Thousand genomes http://www.1000genomes.org/ - THOUSAND_GENOMES("1000Genomes"), - - //ESP project http://evs.gs.washington.edu/EVS/ - ESP_AFRICAN_AMERICAN("ESP AA"), - ESP_EUROPEAN_AMERICAN("ESP EA"), - ESP_ALL("ESP All"), - - //ExAC project http://exac.broadinstitute.org/about - EXAC_AFRICAN_INC_AFRICAN_AMERICAN("ExAC AFR"), - EXAC_AMERICAN("ExAC AMR"), - EXAC_EAST_ASIAN("ExAC EAS"), - EXAC_SOUTH_ASIAN("ExAC SAS"), - EXAC_FINNISH("ExAC FIN"), - EXAC_NON_FINNISH_EUROPEAN("ExAC NFE"), - EXAC_OTHER("ExAC OTH"); - - public static final Set ALL_ESP_SOURCES = EnumSet.range(ESP_AFRICAN_AMERICAN, ESP_ALL); - - public static final Set ALL_EXAC_SOURCES = EnumSet.range(EXAC_AFRICAN_INC_AFRICAN_AMERICAN, EXAC_OTHER); - - public static final Set ALL_EXTERNAL_FREQ_SOURCES = EnumSet.range(THOUSAND_GENOMES, EXAC_OTHER); - - private final String source; - - private FrequencySource(String source) { - this.source = source; - } - - public String getSource() { - return source; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/RsId.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/RsId.java deleted file mode 100644 index 259ea5fac..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/frequency/RsId.java +++ /dev/null @@ -1,51 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.frequency; - -/** - * Class representing an NCBI dbSNP reference SNP rsID. - * - * {@link http://www.ncbi.nlm.nih.gov/projects/SNP/index.html} - * - * @author Jules Jacobsen - */ -public class RsId { - - private final int id; - - public RsId(int id) { - this.id = id; - } - - public int getId() { - return id; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 17 * hash + this.id; - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final RsId other = (RsId) obj; - return this.id == other.id; - } - - @Override - public String toString() { - return "rs" + id; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/BasePathogenicityScore.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/BasePathogenicityScore.java deleted file mode 100644 index ebbc4dc04..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/BasePathogenicityScore.java +++ /dev/null @@ -1,93 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.pathogenicity; - -/** - * - * @author Jules Jacobsen - */ -public class BasePathogenicityScore implements PathogenicityScore { - - protected final float score; - protected final PathogenicitySource source; - - public BasePathogenicityScore(float score, PathogenicitySource source) { - this.score = score; - this.source = source; - } - - @Override - public float getScore() { - return score; - } - - @Override - public PathogenicitySource getSource() { - return source; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 67 * hash + Float.floatToIntBits(this.score); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final BasePathogenicityScore other = (BasePathogenicityScore) obj; - if (Float.floatToIntBits(this.score) != Float.floatToIntBits(other.score)) { - return false; - } - return true; - } - - //Higher scores are more likely pathogenic so this is the reverse of what's normal (we're using a probablility of pathogenicity) - //comparable requires a negative integer, zero, or a positive integer as this object is less than, equal to, or greater than the specified object - protected static final int MORE_PATHOGENIC = -1; - protected static final int EQUALS = 0; - protected static final int LESS_PATHOGENIC = 1; - - /** - * For the purposes of this comparator scores are ranked on a scale of 0 to - * 1 where 0 is considered probably non-pathogenic and 1 probably - * pathogenic. The comparator will rank the more pathogenic - * PathogenicityScore higher than a less pathogenic score such that in a - * sorted list the most pathogenic score will come first. - * - * Note: this class has a natural ordering that is inconsistent with equals. - * - * @param other - * @return - */ - @Override - public int compareTo(PathogenicityScore other) { - float otherScore = other.getScore(); - float thisScore = score; - //remember if we're comparing this against a SIFT score we need to invert the - //SIFT score otherwise the comparison will be inverted - if (other.getClass() == SiftScore.class) { - otherScore = 1f - other.getScore(); - } - if (this.getClass() == SiftScore.class) { - thisScore = 1f - score; - } - - if (thisScore == otherScore) { - return EQUALS; - } - if (thisScore > otherScore) { - return MORE_PATHOGENIC; - } - return LESS_PATHOGENIC; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/CaddScore.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/CaddScore.java deleted file mode 100644 index 3edbc0bf1..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/CaddScore.java +++ /dev/null @@ -1,26 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -/** - * CADD info - see {@link http://cadd.gs.washington.edu/info} - * - * @author Jules Jacobsen - */ -public class CaddScore extends BasePathogenicityScore { - - public CaddScore(float score) { - super(score, PathogenicitySource.CADD); - } - - @Override - public String toString() { - return "CADD: " + score; - } - - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/MutationTasterScore.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/MutationTasterScore.java deleted file mode 100644 index 9062f0d98..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/MutationTasterScore.java +++ /dev/null @@ -1,31 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -/** - * - * @author Jules Jacobsen - */ -public class MutationTasterScore extends BasePathogenicityScore { - - public static final float MTASTER_THRESHOLD = 0.94f; - - public MutationTasterScore(float score) { - super(score, PathogenicitySource.MUTATION_TASTER); - } - - @Override - public String toString() { - if (score > MTASTER_THRESHOLD) { - return String.format("Mutation Taster: %.3f (P)", score); - } else { - return String.format("Mutation Taster: %.3f", score); - } - } - - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityData.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityData.java deleted file mode 100644 index 8de5cf611..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityData.java +++ /dev/null @@ -1,160 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import static de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource.*; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.EnumMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Objects; -import java.util.Set; - -/** - * Container for PathogenicityScore data about a variant. - * - * @author Jules Jacobsen - */ -public class PathogenicityData { - - private final Map pathogenicityScores; - - public static final PathogenicityData EMPTY_DATA = new PathogenicityData(); - - public PathogenicityData(PathogenicityScore... pathScore) { - this(new HashSet<>(Arrays.asList(pathScore))); - } - - public PathogenicityData(Set pathScores) { - pathogenicityScores = new EnumMap(PathogenicitySource.class); - for (PathogenicityScore pathScore : pathScores) { - if (pathScore != null) { - pathogenicityScores.put(pathScore.getSource(), pathScore); - } - } - } - - public PolyPhenScore getPolyPhenScore() { - return (PolyPhenScore) getPredictedScore(POLYPHEN); - } - - public MutationTasterScore getMutationTasterScore() { - return (MutationTasterScore) getPredictedScore(MUTATION_TASTER); - } - - public SiftScore getSiftScore() { - return (SiftScore) getPredictedScore(SIFT); - } - - public CaddScore getCaddScore() { - return (CaddScore) getPredictedScore(CADD); - } - - public RemmScore getRemmScore() { - return (RemmScore) getPredictedScore(REMM); - } - - public List getPredictedPathogenicityScores() { - return new ArrayList(pathogenicityScores.values()); - } - - public boolean hasPredictedScore() { - return !pathogenicityScores.isEmpty(); - } - - public boolean hasPredictedScore(PathogenicitySource pathogenicitySource) { - return pathogenicityScores.containsKey(pathogenicitySource); - } - - /** - * Returns the PathogenicityScore from the requested source, or null if not present. - * - * @param pathogenicitySource - * @return - */ - public PathogenicityScore getPredictedScore(PathogenicitySource pathogenicitySource) { - return pathogenicityScores.get(pathogenicitySource); - } - - /** - * @return The most pathogenic score or null if there are no predicted scores - */ - public PathogenicityScore getMostPathogenicScore() { - if (pathogenicityScores.isEmpty()) { - return null; - //TODO: return a new NonPathogenicPathogenicityScore? -// return new AbstractPathogenicityScore(VariantTypePathogenicityScores.NON_PATHOGENIC_SCORE, VARIANT_TYPE); - } - List knownPathScores = this.getPredictedPathogenicityScores(); - Collections.sort(knownPathScores); - PathogenicityScore mostPathogenic = knownPathScores.get(0); - return mostPathogenic; - } - - - /** - * @return the predicted pathogenicity score for this data set. The score is ranked from 0 (non-pathogenic) to 1 (highly pathogenic) - */ - public float getScore() { - if (pathogenicityScores.isEmpty()) { - return VariantTypePathogenicityScores.NON_PATHOGENIC_SCORE; - } - - PathogenicityScore mostPathogenicPredictedScore = getMostPathogenicScore(); - //Thanks to SIFT being about tolerance rather than pathogenicity, the score is inverted - if (mostPathogenicPredictedScore.getClass() == SiftScore.class) { - return 1 - mostPathogenicPredictedScore.getScore(); - } - return mostPathogenicPredictedScore.getScore(); - } - - - @Override - public int hashCode() { - int hash = 3; - hash = 19 * hash + Objects.hashCode(this.pathogenicityScores); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PathogenicityData other = (PathogenicityData) obj; - if (!Objects.equals(this.pathogenicityScores, other.pathogenicityScores)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "PathogenicityData" + pathogenicityScores.values(); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityScore.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityScore.java deleted file mode 100644 index 844998eb9..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityScore.java +++ /dev/null @@ -1,17 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.pathogenicity; - -/** - * - * @author Jules Jacobsen - */ -public interface PathogenicityScore extends Comparable { - - public float getScore(); - - public PathogenicitySource getSource(); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicitySource.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicitySource.java deleted file mode 100644 index a80ecb116..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicitySource.java +++ /dev/null @@ -1,38 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -/** - * Enum representing the pathogenicity prediction method/database used to - * calculate a given score. - * - * @author Jules Jacobsen - */ -public enum PathogenicitySource { - //variant type is from Jannovar - VARIANT_TYPE, - //these guys are calculated from other sources - POLYPHEN, - MUTATION_TASTER, - SIFT, - CADD, - REMM; - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PolyPhenScore.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PolyPhenScore.java deleted file mode 100644 index 6052c2c45..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/PolyPhenScore.java +++ /dev/null @@ -1,45 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.pathogenicity; - -/** - * PolyPhen (polymorphism phenotyping) score. - * - * @link http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2855889/?report=classic - * @link http://genetics.bwh.harvard.edu/pph2/ - * - * @author Jules Jacobsen - */ -public class PolyPhenScore extends BasePathogenicityScore { - - /** - * Possibly damaging is > 0.446 with Polyphen2 (this is an intermediate - * category, thus, we are not being extremely strict with the polyphen - * filter). - */ - public static final float POLYPHEN_THRESHOLD = 0.446f; - - /** - * A polyphen2 score above this threshold is probably damaging - */ - public static final float POLYPHEN_PROB_DAMAGING_THRESHOLD = 0.956f; - - public PolyPhenScore(float score) { - super(score, PathogenicitySource.POLYPHEN); - } - - @Override - public String toString() { - if (score > POLYPHEN_PROB_DAMAGING_THRESHOLD) { - return String.format("Polyphen2: %.3f (D)", score); - } else if (score > POLYPHEN_THRESHOLD) { - return String.format("Polyphen2: %.3f (P)", score); - } else { - return String.format("Polyphen2: %.3f (B)", score); - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/RemmScore.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/RemmScore.java deleted file mode 100644 index 16f22d944..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/RemmScore.java +++ /dev/null @@ -1,38 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -/** - * REMM info - see {@link ...} - * - * @author Jules Jacobsen - */ -public class RemmScore extends BasePathogenicityScore { - - public RemmScore(float score) { - super(score, PathogenicitySource.REMM); - } - - @Override - public String toString() { - return String.format("REMM: %.3f", score); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/SiftScore.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/SiftScore.java deleted file mode 100644 index 577110393..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/SiftScore.java +++ /dev/null @@ -1,48 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.pathogenicity; - -/** - * The score is the normalized probability that the amino acid change is - * tolerated. SIFT predicts substitutions with scores less than 0.05 as - * deleterious. Some SIFT users have found that substitutions with scores less - * than 0.1 provide better sensitivity for detecting deleterious SNPs. - * - * Single nucleotide polymorphism (SNP) studies and random mutagenesis projects - * identify amino acid substitutions in protein-coding regions. Each - * substitution has the potential to affect protein function. SIFT (Sorting - * Intolerant From Tolerant) is a program that predicts whether an amino acid - * substitution affects protein function so that users can prioritize - * substitutions for further study. It has been shown that SIFT can distinguish - * between functionally neutral and deleterious amino acid changes in - * mutagenesis studies and on human polymorphisms. SIFT is available at - * {@link http://blocks.fhcrc.org/sift/SIFT.html} - * - * {@link http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168916/} - * - * @author Jules Jacobsen - */ -public class SiftScore extends BasePathogenicityScore { - - /** - * A SIFT score below this threshold is considered to be pathogenic - */ - public static final float SIFT_THRESHOLD = 0.06f; - - public SiftScore(float score) { - super(score, PathogenicitySource.SIFT); - } - - @Override - public String toString() { - if (score < SiftScore.SIFT_THRESHOLD) { - return String.format("SIFT: %.3f (D)", score); - } else { - return String.format("SIFT: %.3f (T)", score); - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/AbstractPriorityResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/AbstractPriorityResult.java deleted file mode 100644 index 87dfdc54a..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/AbstractPriorityResult.java +++ /dev/null @@ -1,90 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -import java.util.Objects; - -/** - * @author Jules Jacobsen - */ -abstract class AbstractPriorityResult implements PriorityResult { - - final PriorityType priorityType; - - final int geneId; - final String geneSymbol; - final double score; - - protected AbstractPriorityResult(PriorityType priorityType, int geneId, String geneSymbol, double score) { - this.priorityType = priorityType; - this.geneId = geneId; - this.geneSymbol = geneSymbol; - this.score = score; - } - - @Override - public PriorityType getPriorityType() { - return priorityType; - } - - public int getGeneId() { - return geneId; - } - - public String getGeneSymbol() { - return geneSymbol; - } - - @Override - public float getScore() { - return (float) score; - } - - @Override - public String getHTMLCode() { - return "Not implemented here"; - } - - @Override - public boolean equals(Object o) { - if (this == o) return true; - if (!(o instanceof AbstractPriorityResult)) return false; - AbstractPriorityResult that = (AbstractPriorityResult) o; - return geneId == that.geneId && - Double.compare(that.score, score) == 0 && - priorityType == that.priorityType && - Objects.equals(geneSymbol, that.geneSymbol); - } - - @Override - public int hashCode() { - return Objects.hash(priorityType, geneId, geneSymbol, score); - } - - @Override - public String toString() { - return "AbstractPriorityResult{" + - "priorityType=" + priorityType + - ", geneId=" + geneId + - ", geneSymbol='" + geneSymbol + '\'' + - ", score=" + score + - '}'; - } -} \ No newline at end of file diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriority.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriority.java deleted file mode 100644 index f454ecc2d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriority.java +++ /dev/null @@ -1,277 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.prioritisers.util.DataMatrix; -import java.util.ArrayList; -import java.util.List; -import java.util.Objects; -import org.jblas.FloatMatrix; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Filter genes according to the random walk proximity in the protein-protein - * interaction network. - *

- * The files required for the constructor of this filter should be downloaded - * from: - * http://compbio.charite.de/hudson/job/randomWalkMatrix/lastSuccessfulBuild/artifact/ - *

- * This class coordinates random walk analysis as described in the paper - * - * Walking the interactome for prioritization of candidate disease genes. - * - * @see RandomWalk - * Hudson page - * @author Sebastian Koehler - * @version 0.09 (3 November, 2013) - */ -public class ExomeWalkerPriority implements Prioritiser { - - private static final Logger logger = LoggerFactory.getLogger(ExomeWalkerPriority.class); - - private final PriorityType priorityType = PriorityType.EXOMEWALKER_PRIORITY; - - /** - * A list of messages that can be used to create a display in a HTML page or - * elsewhere. - */ - private List messages = new ArrayList<>(); - - /** - * The random walk matrix object - */ - private DataMatrix randomWalkMatrix; - - /** - * List of the Entrez Gene IDs corresponding to the disease gene family that - * will be used to prioritize the genes with variants in the exome. - */ - private List seedGenes; - - /** - * This is the matrix of similarities between the seeed genes and all genes - * in the network, i.e., pinfinity. - */ - private FloatMatrix combinedProximityVector; - - /** - * Create a new instance of the {@link ExomeWalkerPriority}. - * - * Assumes the list of seed genes (Entrez gene IDs) has been set!! This - * happens with the method {@link #setParameters}. - * - * @param randomWalkMatrixFileZip The zipped(!) RandomWalk matrix file. - * @param randomWalkGeneId2IndexFileZip The zipped(!) file with the mapping - * between Entrez-Ids and Matrix-Indices. - * @throws ExomizerInitializationException - * @see Uberpheno - * Hudson page - */ - public ExomeWalkerPriority(String randomWalkMatrixFileZip, String randomWalkGeneId2IndexFileZip) { - - if (randomWalkMatrix == null) { - try { - randomWalkMatrix = new DataMatrix(randomWalkMatrixFileZip, randomWalkGeneId2IndexFileZip, true); - } catch (Exception e) { - /* This exception is thrown if the files for the random walk cannot be found. */ - logger.error("Unable to initialize the random walk matrix", e); - } - } - } - - /** - * - * @param randomWalkMatrix - * @param entrezSeedGenes - */ - public ExomeWalkerPriority(DataMatrix randomWalkMatrix, List entrezSeedGenes) { - - this.randomWalkMatrix = randomWalkMatrix; - seedGenes = new ArrayList<>(); - addMatchedGenesToSeedGeneList(entrezSeedGenes); - computeDistanceAllNodesFromStartNodes(); - } - - /** - * Adds the Entrez ids in the list provided to the seedGenes if it is - * contained in the DataMatrix. - * - * @param entrezSeedGenes - */ - private void addMatchedGenesToSeedGeneList(List entrezSeedGenes) { - for (Integer entrezId : entrezSeedGenes) { - - if (randomWalkMatrix.containsGene(entrezId)) { - seedGenes.add(entrezId); - } else { - logger.warn("Cannot use entrez-id {} as seed gene as it is not present in the DataMatrix provided.", entrezId); - } - } - - if (this.seedGenes.isEmpty()) { - logger.error("Could not find any of the given genes in random-walk matrix. You gave: {}", entrezSeedGenes); - } - } - - /** - * Flag to output results of filtering against Genewanderer. - */ - @Override - public PriorityType getPriorityType() { - return priorityType; - } - - /** - * Compute the distance of all genes in the Random Walk matrix to the set of - * seed genes given by the user. - */ - private void computeDistanceAllNodesFromStartNodes() { - boolean first = true; -// FloatMatrix combinedProximityVector = null; - for (Integer seedGeneEntrezId : seedGenes) { - //shouldn't happed as we've already thrown this in the constructor -// if (this.randomWalkMatrix == null) { -// String e = "[GeneWanderer.java] Error: randomWalkMatrix is null"; -// throw new ExomizerInitializationException(e); -// } -// if (this.randomWalkMatrix.objectid2idx == null) { -// String e = "[GeneWanderer.java] Error: randomWalkMatrix.object2idx is null"; -// throw new ExomizerInitializationException(e); -// } - if (!randomWalkMatrix.containsGene(seedGeneEntrezId)) { - /* Note that the RW matrix does not have an entry for every - Entrez Gene. If the gene is not contained in the matrix, we - skip it. The gene will be given a (low) default score in - Genewanderer Relevance. - */ - continue; - } - //Get the column we need, this has the distances of ALL genes to the current gene - FloatMatrix column = randomWalkMatrix.getColumnMatrixForGene(seedGeneEntrezId); - - // for the first column/known gene we have to init the resulting vector - if (first) { - combinedProximityVector = column; - first = false; - } else { - combinedProximityVector = combinedProximityVector.add(column); - } - } - /* p_{\infty} */ -// this.combinedProximityVector = combinedProximityVector; - } - - /** - * Prioritize a list of candidate {@link exomizer.exome.Gene Gene} objects - * (the candidate genes have rare, potentially pathogenic variants). - *

- * You have to call {@link #setParameters} before running this function. - * - * @param geneList List of candidate genes. - * @see exomizer.filter.Filter#filter_list_of_variants(java.util.ArrayList) - */ - @Override - public void prioritizeGenes(List geneList) { - if (seedGenes == null || seedGenes.isEmpty()) { - throw new RuntimeException("Please specify a valid list of known genes!"); - } - - int PPIdataAvailable = 0; - int totalGenes = geneList.size(); - double max = Double.MIN_VALUE; - double min = Double.MAX_VALUE; - for (Gene gene : geneList) { - ExomeWalkerPriorityResult relScore = null; - if (randomWalkMatrix.containsGene(gene.getEntrezGeneID())) { - double val = computeSimStartNodesToNode(gene); - if (val > max) { - max = val; - } - if (val < min) { - min = val; - } - relScore = new ExomeWalkerPriorityResult(val); - ++PPIdataAvailable; - } else { - relScore = ExomeWalkerPriorityResult.noPPIDataScore(); - } - gene.addPriorityResult(relScore); - } - -// float factor = 1f / (float) max; -// float factorMaxPossible = 1f / (float) combinedProximityVector.max(); -// -// for (Gene gene : geneList) { -// float scr = gene.getPriorityResult(EXOMEWALKER_PRIORITY); -// float newscore = factor * (scr - (float) min); -// gene.resetPriorityScore(EXOMEWALKER_PRIORITY, newscore); -// newscore = factorMaxPossible * (scr - (float) min); -// gene.resetPriorityScore(EXOMEWALKER_PRIORITY, newscore); -// } - - //TODO: move this into a report if required -// String s = String.format("Protein-Protein Interaction Data was available for %d of %d genes (%.1f%%)", -// PPIdataAvailable, totalGenes, 100f * ((float) PPIdataAvailable / (float) totalGenes)); -// this.messages.add(s); -// StringBuilder sb = new StringBuilder(); -// sb.append("Seed genes:"); -// for (Integer seed : seedGenes) { -// sb.append(seed + " "); -// } -// this.messages.add(sb.toString()); - } - - /** - * @return list of messages representing process, result, and if any, errors - * of score filtering. - */ - public List getMessages() { - return messages; - } - - /** - * This function retrieves the random walk similarity score for the gene - * - * @param nodeToCompute Gene for which the RW score is to bee retrieved - */ - private double computeSimStartNodesToNode(Gene nodeToCompute) { - int idx = randomWalkMatrix.getRowIndexForGene(nodeToCompute.getEntrezGeneID()); - double val = combinedProximityVector.get(idx, 0); - return val; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 37 * hash + Objects.hashCode(this.priorityType); - hash = 37 * hash + Objects.hashCode(this.seedGenes); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final ExomeWalkerPriority other = (ExomeWalkerPriority) obj; - if (this.priorityType != other.priorityType) { - return false; - } - if (!Objects.equals(this.seedGenes, other.seedGenes)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "ExomeWalkerPriority{" + "seedGenes=" + seedGenes + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriorityResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriorityResult.java deleted file mode 100644 index 064330623..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriorityResult.java +++ /dev/null @@ -1,85 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -/** - * - * @author Sebastian Koehler - * @version 0.06 (6 January, 2014). - */ -public class ExomeWalkerPriorityResult implements PriorityResult { - - /** - * The Random walk similarity score. - */ - private double score; - private final double rawScore; - private double scaledByMaxScore = -10; - - /** - * @param score The similarity score assigned by the random walk. - */ - public ExomeWalkerPriorityResult(double score) { - this.score = score; - this.rawScore = score; - } - - @Override - public PriorityType getPriorityType() { - return PriorityType.EXOMEWALKER_PRIORITY; - } - - /** - * - */ - @Override - public float getScore() { - return (float) score; - } - - /** - * This is call for genes with no PPI data; they are assigned a score of - * zero. They will be assigned a score equivalent to the median of all genes - * by the function {@code prioritize_listofgenes} in - * {@link exomizer.priority.Priority Priority}. basically as a kind of - * uniform prior. - */ - public static ExomeWalkerPriorityResult noPPIDataScore() { - float nodatascore = 0f; - ExomeWalkerPriorityResult grs = new ExomeWalkerPriorityResult(nodatascore); - return grs; - } - - /** - * @return An HTML list with an entry representing the GeneWanderer (Random - * walk) similarity score. - * - */ - @Override - public String getHTMLCode() { - return String.format("

Random walk similarity score: %.3f
", this.score); - } - - public double getRawScore() { - return this.rawScore; - } - - public double getScaledScore() { - return this.scaledByMaxScore; - } - - /** - * Resets the value of the relevance score to a number between 0 and 1 The - * scores resulting from random walk analysis are renormalized such that the - * highest score is equal to 1 and the lowest score to 0. The - * renormalization is performed by - * {@link exomizer.priority.GenewandererPriority GenewandererPriority} - * - * @param newscore new value for relevance score - */ - public void setScore(float newscore) { - this.score = newscore; - if (this.scaledByMaxScore == -10) { - this.scaledByMaxScore = newscore; - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhiveOptions.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhiveOptions.java deleted file mode 100644 index 8f3bf4a57..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhiveOptions.java +++ /dev/null @@ -1,199 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.Model; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * @author Jules Jacobsen - */ -public class HiPhiveOptions { - private static final Logger logger = LoggerFactory.getLogger(HiPhiveOptions.class); - private final String diseaseId; - private final String candidateGeneSymbol; - - private final boolean benchmarkingEnabled; - - private boolean runPpi = true; - private boolean runHuman = true; - private boolean runMouse = true; - private boolean runFish = true; - - - /** - * Default constructor with safe empty return values. Use this if you don't want to run HiPhive in benchmarking mode. - */ - public HiPhiveOptions() { - diseaseId = ""; - candidateGeneSymbol = ""; - benchmarkingEnabled = false; - } - - /** - * Constructor for use when running HiPhive in benchmarking mode. Both the diseaseId and the candidate gene symbol - * must be valid in order to trigger benchmarking mode. - * - * @param diseaseId - * @param candidateGeneSymbol - */ - public HiPhiveOptions(String diseaseId, String candidateGeneSymbol) { - this.diseaseId = diseaseId; - this.candidateGeneSymbol = candidateGeneSymbol; - if (nullOrEmpty(diseaseId) || nullOrEmpty(candidateGeneSymbol)) { - benchmarkingEnabled = false; - } else { - benchmarkingEnabled = true; - } - } - - private boolean nullOrEmpty(String string) { - return string == null || string.isEmpty(); - } - - /** - * Constructor for use when running HiPhive in benchmarking mode with optional parameters to allow specification of - * which organism to run against and wether or not to run against the PPI matrix. - * - * Valid parameters are 'human', 'mouse', 'fish', 'ppi'. Combinations must be comma separated, for example - * 'human,fish,ppi' will only run the genes against human and fish phenotypes and the ppi matrix. - * - * Both the diseaseId and the candidate gene symbol must be valid in order to trigger benchmarking mode. - * - * @param diseaseId - * @param candidateGeneSymbol - */ - public HiPhiveOptions(String diseaseId, String candidateGeneSymbol, String runParameters) { - this(diseaseId, candidateGeneSymbol); - - if (!runParameters.isEmpty()) { - setAllRunParametersFalse(); - for (String param : runParameters.split(",")) { - if (param.equals("ppi")) { - runPpi = true; - } else if (param.equals("human")) { - runHuman = true; - } else if (param.equals("mouse")) { - runMouse = true; - } else if (param.equals("fish")) { - runFish = true; - } else { - throw new InvalidRunParameterException(String.format("'%s' is not a valid parameter.", param)); - } - } - } - } - - private void setAllRunParametersFalse() { - runPpi = false; - runHuman = false; - runMouse = false; - runFish = false; - } - - - public String getDiseaseId() { - return diseaseId; - } - - public String getCandidateGeneSymbol() { - return candidateGeneSymbol; - } - - public boolean isBenchmarkingEnabled() { - return benchmarkingEnabled; - } - - public boolean runPpi() { - return runPpi; - } - - public boolean runFish() { - return runFish; - } - - public boolean runMouse() { - return runMouse; - } - - public boolean runHuman() { - return runHuman; - } - - public boolean isBenchmarkHit(Model model) { - return matchesDisease(model) && matchesCandidateGeneSymbol(model); - } - - private boolean matchesCandidateGeneSymbol(Model model) { - return model.getHumanGeneSymbol() == null ? candidateGeneSymbol == null : model.getHumanGeneSymbol().equals(candidateGeneSymbol); - } - - private boolean matchesDisease(Model model) { - // human model ID is now disease plus entrezgene to ensure uniqueness in HiPhive code - return model.getModelId() == null ? diseaseId == null : model.getModelId().split("_")[0].equals(diseaseId); - //return model.getModelId() == null ? diseaseId == null : model.getModelId().equals(diseaseId + "_" + model.getEntrezGeneId()); - } - - public class InvalidRunParameterException extends RuntimeException { - public InvalidRunParameterException(String message) { - super(message); - } - } - - @Override - public boolean equals(Object o) { - if (this == o) { - return true; - } - if (o == null || getClass() != o.getClass()) { - return false; - } - - HiPhiveOptions that = (HiPhiveOptions) o; - - if (benchmarkingEnabled != that.benchmarkingEnabled) { - return false; - } - if (runPpi != that.runPpi) { - return false; - } - if (runHuman != that.runHuman) { - return false; - } - if (runMouse != that.runMouse) { - return false; - } - if (runFish != that.runFish) { - return false; - } - if (diseaseId != null ? !diseaseId.equals(that.diseaseId) : that.diseaseId != null) { - return false; - } - return !(candidateGeneSymbol != null ? !candidateGeneSymbol.equals(that.candidateGeneSymbol) : that.candidateGeneSymbol != null); - - } - - @Override - public int hashCode() { - int result = diseaseId != null ? diseaseId.hashCode() : 0; - result = 31 * result + (candidateGeneSymbol != null ? candidateGeneSymbol.hashCode() : 0); - result = 31 * result + (benchmarkingEnabled ? 1 : 0); - result = 31 * result + (runPpi ? 1 : 0); - result = 31 * result + (runHuman ? 1 : 0); - result = 31 * result + (runMouse ? 1 : 0); - result = 31 * result + (runFish ? 1 : 0); - return result; - } - - @Override - public String toString() { - return "HiPhiveOptions{" + - "diseaseId='" + diseaseId + '\'' + - ", candidateGeneSymbol='" + candidateGeneSymbol + '\'' + - ", benchmarkingEnabled=" + benchmarkingEnabled + - ", runPpi=" + runPpi + - ", runHuman=" + runHuman + - ", runMouse=" + runMouse + - ", runFish=" + runFish + - '}'; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriority.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriority.java deleted file mode 100644 index ac1295129..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriority.java +++ /dev/null @@ -1,591 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.Model; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import de.charite.compbio.exomiser.core.prioritisers.util.DataMatrix; -import de.charite.compbio.exomiser.core.prioritisers.util.PriorityService; -import de.charite.compbio.exomiser.core.model.Organism; -import java.util.*; -import java.util.Map.Entry; -import org.jblas.FloatMatrix; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.thymeleaf.util.AggregateUtils; - -/** - * Filter genes according phenotypic similarity and to the random walk proximity - * in the protein-protein interaction network. - * - * @author Damian Smedley - * @author Jules Jacobsen - */ -public class HiPhivePriority implements Prioritiser { - - private static final Logger logger = LoggerFactory.getLogger(HiPhivePriority.class); - - private static final PriorityType PRIORITY_TYPE = PriorityType.HIPHIVE_PRIORITY; - - private final List hpoIds; - private final HiPhiveOptions options; - private final DataMatrix randomWalkMatrix; - - private PriorityService priorityService; - - private List highQualityPhenoMatchedGenes = new ArrayList<>(); - - - private Map geneScores = new HashMap<>(); - - private double bestMaxScore = 0d; - private double bestAvgScore = 0d; - - - /** - * This is the matrix of similarities between the seeed genes and all genes - * in the network, i.e., pinfinity. - */ - private FloatMatrix weightedHighQualityMatrix = new FloatMatrix(); - - /** - * - * @param hpoIds - * @param options - * @param randomWalkMatrix - */ - public HiPhivePriority(List hpoIds, HiPhiveOptions options, DataMatrix randomWalkMatrix) { - this.hpoIds = hpoIds; - this.options = options; - - this.randomWalkMatrix = randomWalkMatrix; - } - - @Override - public PriorityType getPriorityType() { - return PRIORITY_TYPE; - } - - /** - * Prioritize a list of candidate genes. These candidate genes may have rare, potentially pathogenic variants. - *

- * - * @param genes List of candidate genes. - */ - @Override - public void prioritizeGenes(List genes) { - if (options.isBenchmarkingEnabled()) { - logger.info("Running in benchmarking mode for disease: {} and candidateGene: {}", options.getDiseaseId(), options.getCandidateGeneSymbol()); - } - List hpoPhenotypeTerms = priorityService.makePhenotypeTermsFromHpoIds(hpoIds); - - //TODO: this is repetitive, surely there must be a better way to deal with these, perhaps a GeneModelMatrix class? - final Map bestDiseaseModelForGene = makeHpToHumanMatches(options.runHuman(), hpoPhenotypeTerms, Organism.HUMAN); - final Map bestMouseModelForGene = makeHpToOtherSpeciesMatches(options.runMouse(), hpoPhenotypeTerms, Organism.MOUSE); - final Map bestFishModelForGene = makeHpToOtherSpeciesMatches(options.runFish(), hpoPhenotypeTerms, Organism.FISH); - -// FloatMatrix weightedHighQualityMatrix = new FloatMatrix(); - if (options.runPpi()) { - //TODO: make this local if possible - weightedHighQualityMatrix = makeWeightedProteinInteractionMatrixFromHighQualityPhenotypeMatchedGenes(highQualityPhenoMatchedGenes, geneScores); - } - - logger.info("Prioritising genes..."); - for (Gene gene : genes) { - HiPhivePriorityResult priorityResult = makePriorityResultForGene(gene, hpoPhenotypeTerms, bestDiseaseModelForGene, bestMouseModelForGene, bestFishModelForGene); - gene.addPriorityResult(priorityResult); - } - - // now just set walker score directly so no need for this re-ranking - - /* - * refactor all scores for genes that are not direct pheno-hits but in - * PPI with them to a linear range - */ -// logger.info("Adjusting gene scores for non-pheno hits with protein-protein interactions"); -// TreeMap> geneScoreMap = new TreeMap<>(); -// for (Gene g : genes) { -// Float geneScore = ((HiPhivePriorityResult) g.getPriorityResult(PriorityType.HI_PHIVE_PRIORITY)).getWalkerScore(); -// if (geneScore == 0f) { -// continue; -// } -// if (geneScoreMap.containsKey(geneScore)) { -// List geneScoreGeneList = geneScoreMap.get(geneScore); -// geneScoreGeneList.add(g); -// } else { -// List geneScoreGeneList = new ArrayList<>(); -// geneScoreGeneList.add(g); -// geneScoreMap.put(geneScore, geneScoreGeneList); -// } -// } -// //changed so when have only 2 genes say in filtered set 1st one will get 0.6 and second 0.3 rather than 0.3 and 0 -// float rank = 0; -// for (Float score : geneScoreMap.descendingKeySet()) { -// List geneScoreGeneList = geneScoreMap.get(score); -// int sharedHits = geneScoreGeneList.size(); -// float adjustedRank = rank; -// if (sharedHits > 1) { -// adjustedRank = rank + (sharedHits / 2); -// } -// float newScore = 0.6f - 0.6f * (adjustedRank / genes.size()); -// rank = rank + sharedHits; -// for (Gene gene : geneScoreGeneList) { -// //i.e. only overwrite phenotype-based score if PPI score is larger -// HiPhivePriorityResult result = (HiPhivePriorityResult) gene.getPriorityResult(PriorityType.HI_PHIVE_PRIORITY); -// if (newScore > result.getScore()) { -// result.setScore(newScore); -// } -// } -// } - -// String message = makeStatsMessage(genes); - } - - private HiPhivePriorityResult makePriorityResultForGene(Gene gene, List hpoPhenotypeTerms, final Map bestDiseaseModelForGene, final Map bestMouseModelForGene, final Map bestFishModelForGene) { - - Integer entrezGeneId = gene.getEntrezGeneID(); - List bestPhenotypeMatchModels = getBestPhenotypeMatchesForGene(entrezGeneId, bestDiseaseModelForGene, bestMouseModelForGene, bestFishModelForGene); - double score = 0; - for (Model model : bestPhenotypeMatchModels) { - score = Math.max(score, model.getScore()); - } - List closestPhysicallyInteractingGeneModels = new ArrayList<>(); - double walkerScore = 0d; - if (options.runPpi() && randomWalkMatrix.containsGene(entrezGeneId) && !highQualityPhenoMatchedGenes.isEmpty()) { - Integer columnIndex = getColumnIndexOfMostPhenotypicallySimilarGene(gene, highQualityPhenoMatchedGenes); - Integer rowIndex = randomWalkMatrix.getRowIndexForGene(entrezGeneId); - walkerScore = weightedHighQualityMatrix.get(rowIndex, columnIndex); - // optimal adjustment based on benchmarking to allow walker scores to compete with low phenotype scores - walkerScore = 0.5 + walkerScore; - score = Math.max(score, walkerScore); - if (walkerScore <= 0.00001) { - walkerScore = 0d; - } else { - Integer closestGeneId = highQualityPhenoMatchedGenes.get(columnIndex); - closestPhysicallyInteractingGeneModels = getBestPhenotypeMatchesForGene(closestGeneId, bestDiseaseModelForGene, bestMouseModelForGene, bestFishModelForGene); - } - } - logger.debug("Making result for {} {} score={}", gene.getGeneSymbol(), entrezGeneId, score); - return new HiPhivePriorityResult(gene.getGeneSymbol(), score, hpoPhenotypeTerms, bestPhenotypeMatchModels, closestPhysicallyInteractingGeneModels, walkerScore, matchesCandidateGene(gene)); - } - - private boolean matchesCandidateGene(Gene gene) { - //new Jannovar labelling can have multiple genes per var but first one is most pathogenic- we'll take this one. - return options.getCandidateGeneSymbol().equals(gene.getGeneSymbol()) || gene.getGeneSymbol().startsWith(options.getCandidateGeneSymbol() + ","); - } - - private List getBestPhenotypeMatchesForGene(Integer entrezGeneId, final Map bestDiseaseModelForGene, final Map bestMouseModelForGene, final Map bestFishModelForGene) { - List bestPhenotypeMatchModels = new ArrayList<>(); - if (bestDiseaseModelForGene.containsKey(entrezGeneId)) { - Model bestDiseseModel = bestDiseaseModelForGene.get(entrezGeneId); - bestPhenotypeMatchModels.add(bestDiseseModel); - } - if (bestMouseModelForGene.containsKey(entrezGeneId)) { - Model bestMouseModel = bestMouseModelForGene.get(entrezGeneId); - bestPhenotypeMatchModels.add(bestMouseModel); - } - if (bestFishModelForGene.containsKey(entrezGeneId)) { - Model bestFishModel = bestFishModelForGene.get(entrezGeneId); - bestPhenotypeMatchModels.add(bestFishModel); - } - return bestPhenotypeMatchModels; - } - - private String makeStatsMessage(List genes) { - int numGenesWithPhenotypeOrPpiData = 0; - for (Gene gene : genes) { - HiPhivePriorityResult priorityResult = (HiPhivePriorityResult) gene.getPriorityResult(PRIORITY_TYPE); - if (priorityResult.getWalkerScore() > 0 || priorityResult.getHumanScore() > 0 || priorityResult.getMouseScore() > 0 || priorityResult.getFishScore() > 0) { - numGenesWithPhenotypeOrPpiData++; - } - } - int totalGenes = genes.size(); - return String.format("Phenotype and Protein-Protein Interaction evidence was available for %d of %d genes (%.1f%%)", - numGenesWithPhenotypeOrPpiData, totalGenes, 100f * (numGenesWithPhenotypeOrPpiData / (float) totalGenes)); - } - - private Map makeHpToHumanMatches(boolean runHuman, List queryHpoPhenotypes, Organism species) { - //TODO: this must always run in order that the best score is set - // Human - logger.info("Fetching HUMAN-{} phenotype matches...", species); - Map> humanPhenotypeMatches = getMatchingPhenotypesForSpecies(queryHpoPhenotypes, species); - Set bestMatches = getBestMatchesForQueryTerms(humanPhenotypeMatches); - - calculateBestScoresFromHumanPhenotypes(bestMatches); - - if (runHuman) { - return runDynamicQuery(bestMatches, humanPhenotypeMatches, species); - } else { - return Collections.emptyMap(); - } - } - - private Map makeHpToOtherSpeciesMatches(boolean runSpecies, List queryHpoPhenotypes, Organism species) { - if (runSpecies) { - logger.info("Fetching HUMAN-{} phenotype matches...", species); - Map> mousePhenotypeMatches = getMatchingPhenotypesForSpecies(queryHpoPhenotypes, species); - Set bestMatches = getBestMatchesForQueryTerms(mousePhenotypeMatches); - return runDynamicQuery(bestMatches, mousePhenotypeMatches, species); - } else { - return Collections.emptyMap(); - } - } - - private Map> getMatchingPhenotypesForSpecies(List queryHpoPhenotypes, Organism species) { - Map> speciesPhenotypeMatches = new LinkedHashMap<>(); - for (PhenotypeTerm hpoTerm : queryHpoPhenotypes) { - Set termMatches = priorityService.getSpeciesMatchesForHpoTerm(hpoTerm, species); - speciesPhenotypeMatches.put(hpoTerm, termMatches); - } - return speciesPhenotypeMatches; - } - - private Set getBestMatchesForQueryTerms(Map> allPhenotypeMatches) { - Map bestMatches = new HashMap<>(); - - for (Entry> entry : allPhenotypeMatches.entrySet()) { - PhenotypeTerm queryTerm = entry.getKey(); - for (PhenotypeMatch match : entry.getValue()) { - double score = match.getScore(); - if (bestMatches.containsKey(queryTerm)) { - if (score > bestMatches.get(queryTerm).getScore()) { - bestMatches.put(queryTerm, match); - } - } else { - bestMatches.put(queryTerm, match); - } - } - } - for (PhenotypeMatch bestMatch : bestMatches.values()) { - logger.debug("Best match: {}-{}={}", bestMatch.getQueryPhenotypeId(), bestMatch.getMatchPhenotypeId(), bestMatch.getScore()); - } - return new HashSet<>(bestMatches.values()); - } - - /** - * This method only works for same species matches e.g. HPO-HPO or MPO-MPO - * matches as it makes the assumption that the best matches are self-hits. - * DO NOT USE THIS FOR MIXED SPECIES HITS AS THE SCORES WILL BE WRONG. - * - * @param bestMatches - */ - private void calculateBestScoresFromHumanPhenotypes(Collection bestMatches) { - //this is the original algorithm for mixes species matches using hashes instead of PhenotypeMatches: - -// // calculate perfect model scores for human -// // loop over each hp id should start here -// for (String hpId : hpIdsWithPhenotypeMatch) { -// if (bestMappedTermScore.containsKey(hpId)) { -// double hpScore = bestMappedTermScore.get(hpId); -// logger.info("Best forwardHit {}={}", hpId, hpScore); -// // add in scores for best match for the HP term -// sumBestScore += hpScore; -// -// bestMaxScore = Math.max(hpScore, bestMaxScore); -// //logger.info("ADDING SCORE FOR " + hpid + " TO " + bestMappedTermMpId.get(hpid) + " WITH SCORE " + hpScore + ", SUM NOW " + sumBestScore + ", MAX NOW " + bestMaxScore); -// // add in MP-HP hits -// String mpId = bestMappedTermMpId.get(hpId); -// double bestScore = 0d; -// String bestReciprocalHit = ""; -// for (String hpId2 : hpIdsWithPhenotypeMatch) { -// String hashKey = hpId2 + mpId; -// if (speciesPhenotypeMatches.containsKey(hashKey) && speciesPhenotypeMatches.get(hashKey).getScore() > bestScore) { -// bestScore = speciesPhenotypeMatches.get(hashKey).getScore(); -// bestReciprocalHit = hashKey; -// } -// } -// logger.info("Best reciprocalHit {}={}", bestReciprocalHit, bestScore); -// // add in scores for best match for the MP term -// sumBestScore += bestScore; -// //logger.info("ADDING RECIPROCAL SCORE FOR " + mpid + " WITH SCORE " + bestScore + ", SUM NOW " + sumBestScore + ", MAX NOW " + bestMaxScore); -// bestMaxScore = Math.max(hpScore, bestMaxScore); -// } -// } - double sumBestScore = 0d; - for (PhenotypeMatch bestMatch : bestMatches) { - double matchScore = bestMatch.getScore(); - bestMaxScore = Math.max(matchScore, bestMaxScore); - sumBestScore += matchScore; - } - if (bestMatches.size() > 0){// otherwise get a NaN value that escalates to other scores and eventually throws an exception - //bestAvgScore = sumBestScore / bestMatches.size(); - // Aug2015 - average across all HPOs to be consistent with change in calculateBestGeneModelPhenotypeMatchForSpecies - bestAvgScore = sumBestScore / hpoIds.size(); - } - //input set: - //HP:0010055-HP:0010055=2.805085560382805 - //HP:0001363-HP:0001363=2.4418464446906243 - //HP:0001156-HP:0001156=2.048321278502726 - //HP:0011304-HP:0011304=2.749831974791806 - //bestMaxScore=2.805085560382805 bestAvgScore=2.5112713145919905 sumBestScore=10.045085258367962 hpIdsWithPhenotypeMatch=4 - logger.info("bestMaxScore={} bestAvgScore={} sumBestScore={} numBestMatches={}", bestMaxScore, bestAvgScore, sumBestScore, bestMatches.size()); - } - - private Map runDynamicQuery(Set bestMatches, Map> allPhenotypeMatches, Organism species) { - - //TODO: take speciesPhenotypeMatches as input argument for runDynamicQuery - //'hpId + mpId' : phenotypeMatch - Map speciesPhenotypeMatches = new HashMap<>(); - - for (Entry> entry : allPhenotypeMatches.entrySet()) { - PhenotypeTerm queryTerm = entry.getKey(); - String hpId = queryTerm.getId(); - for (PhenotypeMatch match : entry.getValue()) { - PhenotypeTerm matchTerm = match.getMatchPhenotype(); - String mpId = matchTerm.getId(); - String matchIds = hpId + mpId; - speciesPhenotypeMatches.put(matchIds, match); - } - } - - return calculateBestGeneModelPhenotypeMatchForSpecies(species, bestMatches, speciesPhenotypeMatches); - } - - private Map calculateBestGeneModelPhenotypeMatchForSpecies(Organism organism, Set bestMatches, Map speciesPhenotypeMatches) { - // calculate best phenotype matches and scores for all genes - //Integer = EntrezGeneId, String = GeneModelId - - //hpId - Set hpIdsWithPhenotypeMatch = new TreeSet<>(); - for (PhenotypeMatch match : bestMatches) { - hpIdsWithPhenotypeMatch.add(match.getQueryPhenotypeId()); - } - logger.info("hpIdsWithPhenotypeMatch={}", hpIdsWithPhenotypeMatch); - - Set matchedPhenotypeIdsForSpecies = new TreeSet<>(); - for (PhenotypeMatch match : speciesPhenotypeMatches.values()) { - matchedPhenotypeIdsForSpecies.add(match.getMatchPhenotypeId()); - } - logger.info("matchedPhenotypeIdsForspecies {}={}", organism, matchedPhenotypeIdsForSpecies.size()); - - Map> geneModelPhenotypeMatches = new HashMap<>(); - List diseaseGeneModels = priorityService.getModelsForOrganism(organism); - for (Model model : diseaseGeneModels) { - - List matchedPhenotypeIdsForModel = new ArrayList<>(); - for (String mpid : model.getPhenotypeIds()) { - if (matchedPhenotypeIdsForSpecies.contains(mpid)) { - matchedPhenotypeIdsForModel.add(mpid); - } - } - - double maxModelMatchScore = 0d; - double sumModelBestMatchScores = 0d; - - for (String hpId : hpIdsWithPhenotypeMatch) { - double bestMatchScore = 0d; - for (String mpId : matchedPhenotypeIdsForModel) { - String matchIds = hpId + mpId; - if (speciesPhenotypeMatches.containsKey(matchIds)) { - PhenotypeMatch match = speciesPhenotypeMatches.get(matchIds); - double matchScore = match.getScore(); - // identify best match - bestMatchScore = Math.max(matchScore, bestMatchScore); - if (matchScore > 0) { - addGeneModelPhenotypeMatch(geneModelPhenotypeMatches, model, match); - } - } - } - if (bestMatchScore != 0) { - sumModelBestMatchScores += bestMatchScore; - maxModelMatchScore = Math.max(bestMatchScore, maxModelMatchScore); - } - } - // Reciprocal hits - for (String mpId : matchedPhenotypeIdsForModel) { - double bestMatchScore = 0f; - for (String hpId : hpIdsWithPhenotypeMatch) { - String matchIds = hpId + mpId; - if (speciesPhenotypeMatches.containsKey(matchIds)) { - PhenotypeMatch match = speciesPhenotypeMatches.get(matchIds); - double matchScore = match.getScore(); - // identify best match - bestMatchScore = Math.max(matchScore, bestMatchScore); - if (matchScore > 0) { - addGeneModelPhenotypeMatch(geneModelPhenotypeMatches, model, match); - } - } - } - if (bestMatchScore != 0) { - sumModelBestMatchScores += bestMatchScore; - maxModelMatchScore = Math.max(bestMatchScore, maxModelMatchScore); - } - } - /** - * hpIdsWithPhenotypeMatch.size() = no. of HPO disease annotations for human and the no. of annotations with an entry in hp_*_mappings table for other species - * matchedPhenotypeIDsForModel.size() = no. of annotations for model with a match in hp_*_mappings table for at least one of the disease annotations - * Aug 2015 - changed calculation to take into account all HPO terms for averaging after DDD benchmarking - keeps consistent across species then - */ - //int rowColumnCount = hpIdsWithPhenotypeMatch.size() + matchedPhenotypeIdsForModel.size(); - int rowColumnCount = hpoIds.size() + matchedPhenotypeIdsForModel.size(); - // calculate combined score - if (sumModelBestMatchScores != 0) { - double avgBestHitRowsColumnsScore = sumModelBestMatchScores / rowColumnCount; - double combinedScore = 50 * (maxModelMatchScore / bestMaxScore + avgBestHitRowsColumnsScore / bestAvgScore); - if (combinedScore > 100) { - combinedScore = 100; - } - double score = combinedScore / 100; - model.setScore(score); - } - } - return makeBestGeneModelForGenes(geneModelPhenotypeMatches); - } - - /** - * Remember this is just for a single species, so there can be a single best - * mode per gene. Otherwise a gene has a best model for each organism. - * Perhaps the GeneModel should contain it's species too. - */ - private Map makeBestGeneModelForGenes(Map> geneModelPhenotypeMatches) { - Map bestGeneModelForGenes = new HashMap<>(); - - for (Entry> entry : geneModelPhenotypeMatches.entrySet()) { - Integer entrezId = entry.getKey(); - - for (Model model : entry.getValue()) { - double score = model.getScore(); - - // catch hit to known disease-gene association for purposes of benchmarking i.e to simulate novel gene discovery performance - if (options.isBenchmarkingEnabled() && options.isBenchmarkHit(model)) { - logger.info("Found benchmarking hit {}:{} - skipping model", options.getDiseaseId(), options.getCandidateGeneSymbol()); - } else { - // normal behaviour when not trying to exclude candidate gene to simulate novel gene disovery in benchmarking - // only build PPI network for high qual hits - if (score > 0.6) { - logger.debug("Adding high quality score for {} score={}", model.getHumanGeneSymbol(), model.getScore()); - //TODO: this is a bit round-the-houses as it's used in getColumnIndexOfMostPhenotypicallySimilarGene() would probably - //be better using a LinkedHashMap to join these two values together, or use a GeneIdentifier class....? - highQualityPhenoMatchedGenes.add(entrezId); - } - //why use this? Just return the high-quality gene-model matches and iterate through the fuckers. - //also used by makeWeightedProteinInteractionMatrixFromHighQualityPhenotypeMatchedGenes - if (!geneScores.containsKey(entrezId) || score > geneScores.get(entrezId)) { - geneScores.put(entrezId, score); - } - - if (!bestGeneModelForGenes.containsKey(entrezId)) { - logger.debug("Adding new model for {} score={} to bestGeneModels", model.getHumanGeneSymbol(), model.getScore()); - bestGeneModelForGenes.put(entrezId, model); - } else if (bestGeneModelForGenes.get(entrezId).getScore() < model.getScore()) { - logger.debug("Updating best model for {} score={}", model.getHumanGeneSymbol(), model.getScore()); - bestGeneModelForGenes.put(entrezId, model); - } - } - } - } - return bestGeneModelForGenes; - } - - //GeneId - modelId - hpId: PhenotypeMatch - private void addGeneModelPhenotypeMatch(Map> geneModelPhenotypeMatches, Model model, PhenotypeMatch match) { - - model.addMatchIfAbsentOrBetterThanCurrent(match); - - String geneSymbol = model.getHumanGeneSymbol(); - int entrezId = model.getEntrezGeneId(); - String modelId = model.getModelId(); - if (!geneModelPhenotypeMatches.containsKey(entrezId)) { - logger.debug("Adding match for new gene {} (ENTREZ:{}) modelId {} ({}-{}={})", geneSymbol, entrezId, modelId, match.getQueryPhenotypeId(), match.getMatchPhenotypeId(), match.getScore()); - Set geneModels = new HashSet<>(); - geneModels.add(model); - geneModelPhenotypeMatches.put(entrezId, geneModels); - } else if (!geneModelPhenotypeMatches.get(entrezId).contains(model)) { - logger.debug("Adding match for gene {} (ENTREZ:{}) new modelId {} ({}-{}={})", geneSymbol, entrezId, modelId, match.getQueryPhenotypeId(), match.getMatchPhenotypeId(), match.getScore()); - geneModelPhenotypeMatches.get(entrezId).add(model); - } - } - - //todo: If this returned a DataMatrix things might be a bit more convienent later on... - //TODO: does this have to be a list and a map? Can't it just be a map of scores? - private FloatMatrix makeWeightedProteinInteractionMatrixFromHighQualityPhenotypeMatchedGenes(List highQualityPhenoMatchedGenes, Map geneScores) { - logger.info("Making weighted-score Protein-Protein interaction sub-matrix from high quality phenotypic gene matches..."); - int rows = randomWalkMatrix.getMatrix().getRows(); - int cols = highQualityPhenoMatchedGenes.size(); - FloatMatrix highQualityPpiMatrix = FloatMatrix.zeros(rows, cols); - int c = 0; - for (Integer seedGeneEntrezId : highQualityPhenoMatchedGenes) { - if (randomWalkMatrix.containsGene(seedGeneEntrezId)) { - FloatMatrix column = randomWalkMatrix.getColumnMatrixForGene(seedGeneEntrezId); - // weight column by phenoScore - Double score = geneScores.get(seedGeneEntrezId); - column = column.mul(score.floatValue()); - highQualityPpiMatrix.putColumn(c, column); - } - c++; - } - return highQualityPpiMatrix; - } - - /** - * This function retrieves the random walk similarity score for the gene - * - * @param gene for which the random walk score is to be retrieved - */ - private int getColumnIndexOfMostPhenotypicallySimilarGene(Gene gene, List phenotypicallySimilarGeneIds) { - int geneIndex = randomWalkMatrix.getRowIndexForGene(gene.getEntrezGeneID()); - int columnIndex = 0; - double bestScore = 0; - int bestHitIndex = 0; - for (Integer similarGeneEntrezId : phenotypicallySimilarGeneIds) { - if (!randomWalkMatrix.containsGene(similarGeneEntrezId)) { - columnIndex++; - continue; - } else if (similarGeneEntrezId == gene.getEntrezGeneID()) { - //avoid self-hits now are testing genes with direct pheno-evidence as well - columnIndex++; - continue; - } else { - double cellScore = weightedHighQualityMatrix.get(geneIndex, columnIndex); - if (cellScore > bestScore) { - bestScore = cellScore; - bestHitIndex = columnIndex; - } - columnIndex++; - } - } - return bestHitIndex; - } - - public void setPriorityService(PriorityService priorityService) { - this.priorityService = priorityService; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 73 * hash + Objects.hashCode(this.randomWalkMatrix); - hash = 73 * hash + Objects.hashCode(this.hpoIds); - hash = 73 * hash + Objects.hashCode(this.options); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final HiPhivePriority other = (HiPhivePriority) obj; - if (!Objects.equals(this.randomWalkMatrix, other.randomWalkMatrix)) { - return false; - } - if (!Objects.equals(this.hpoIds, other.hpoIds)) { - return false; - } - if (!Objects.equals(this.options, other.options)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "HiPhivePriority{" - + "hpoIds=" + hpoIds - + ", options=" + options - + '}'; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityResult.java deleted file mode 100644 index 4e14ee3c0..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityResult.java +++ /dev/null @@ -1,257 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.DiseaseModel; -import de.charite.compbio.exomiser.core.model.Model; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.List; -import java.util.Map; - -/** - * - * @author Jules Jacobsen - */ -public class HiPhivePriorityResult implements PriorityResult { - - private final String geneSymbol; - private double score = 0f; - private final List queryPhenotypeTerms; - private final List phenotypeEvidence; - private final List ppiEvidence; - - private double humanScore = 0f; - private double mouseScore = 0f; - private double fishScore = 0f; - - private final double walkerScore; - - private final boolean candidateGeneMatch; - - /** - * @param score The similarity score assigned by the random walk. - */ - public HiPhivePriorityResult(String geneSymbol, double score, List queryPhenotypeTerms, List phenotypeEvidence, List ppiEvidence, double walkerScore, boolean candidateGeneMatch) { - this.geneSymbol = geneSymbol; - this.score = score; - this.queryPhenotypeTerms = queryPhenotypeTerms; - setPhenotypeEvidenceScores(phenotypeEvidence); - - this.phenotypeEvidence = phenotypeEvidence; - this.ppiEvidence = ppiEvidence; - this.walkerScore = walkerScore; - - this.candidateGeneMatch = candidateGeneMatch; - } - - private void setPhenotypeEvidenceScores(List phenotypeEvidence) { - if (phenotypeEvidence != null) { - for (Model model : phenotypeEvidence) { - switch (model.getOrganism()) { - case HUMAN: - humanScore = model.getScore(); - break; - case MOUSE: - mouseScore = model.getScore(); - break; - case FISH: - fishScore = model.getScore(); - break; - } - } - } - } - - @Override - public PriorityType getPriorityType() { - return PriorityType.HIPHIVE_PRIORITY; - } - - public String getGeneSymbol() { - return geneSymbol; - } - - @Override - public float getScore() { - return (float) score; - } - - public void setScore(double newScore) { - this.score = newScore; - } - - public List getQueryPhenotypeTerms() { - return queryPhenotypeTerms; - } - - public List getPhenotypeEvidence() { - return phenotypeEvidence; - } - - public List getPpiEvidence() { - return ppiEvidence; - } - - public float getHumanScore() { - return (float) humanScore; - } - - public float getMouseScore() { - return (float) mouseScore; - } - - public float getFishScore() { - return (float) fishScore; - } - - public float getWalkerScore() { - return (float) this.walkerScore; - } - - public boolean isCandidateGeneMatch() { - return candidateGeneMatch; - } - - /** - * @return A summary for the text output formats - */ - public String getPhenotypeEvidenceText() { - StringBuilder humanBuilder = new StringBuilder(); - StringBuilder mouseBuilder = new StringBuilder(); - StringBuilder fishBuilder = new StringBuilder(); - StringBuilder humanPPIBuilder = new StringBuilder(); - StringBuilder mousePPIBuilder = new StringBuilder(); - StringBuilder fishPPIBuilder = new StringBuilder(); - for (Model model : phenotypeEvidence) { - Map bestMatchesForModel = model.getBestPhenotypeMatchForTerms(); - switch (model.getOrganism()) { - case HUMAN: - DiseaseModel diseaseModel = (DiseaseModel) model; - humanBuilder.append(diseaseModel.getDiseaseTerm() + " (" + diseaseModel.getDiseaseId() + "): "); - makeBestPhenotypeMatchText(humanBuilder, bestMatchesForModel); - break; - case MOUSE: - makeBestPhenotypeMatchText(mouseBuilder, bestMatchesForModel); - break; - case FISH: - makeBestPhenotypeMatchText(fishBuilder, bestMatchesForModel); - } - } - for (Model model : ppiEvidence) { - Map bestMatchesForModel = model.getBestPhenotypeMatchForTerms(); - switch (model.getOrganism()) { - case HUMAN: - DiseaseModel diseaseModel = (DiseaseModel) model; - humanPPIBuilder.append("Proximity to " + model.getHumanGeneSymbol() + " associated with " + diseaseModel.getDiseaseTerm() + " (" + diseaseModel.getDiseaseId() + "): "); - makeBestPhenotypeMatchText(humanPPIBuilder, bestMatchesForModel); - break; - case MOUSE: - mousePPIBuilder.append("Proximity to " + model.getHumanGeneSymbol() + " "); - makeBestPhenotypeMatchText(mousePPIBuilder, bestMatchesForModel); - break; - case FISH: - fishPPIBuilder.append("Proximity to " + model.getHumanGeneSymbol() + " "); - makeBestPhenotypeMatchText(fishPPIBuilder, bestMatchesForModel); - } - } - String human = humanBuilder.toString(); - String mouse = mouseBuilder.toString(); - String fish = fishBuilder.toString(); - String humanPPI = humanPPIBuilder.toString(); - String mousePPI = mousePPIBuilder.toString(); - String fishPPI = fishPPIBuilder.toString(); - return String.format("%s\t%s\t%s\t%s\t%s\t%s", human, mouse, fish, humanPPI, mousePPI, fishPPI); - } - - /** - * @return An HTML list with an entry representing the GeneWanderer (Random - * walk) similarity score. - * @see exomizer.filter.ITriage#getHTMLCode() - */ - @Override - public String getHTMLCode() { - //return String.format("

  • Similarity score: %.3f %s
",this.genewandererScore,this.evidence); - StringBuilder stringBuilder = new StringBuilder(); - - for (Model model : phenotypeEvidence) { - Map bestMatchesForModel = model.getBestPhenotypeMatchForTerms(); - switch (model.getOrganism()) { - case HUMAN: - DiseaseModel diseaseModel = (DiseaseModel) model; - String diseaseLink = makeDiseaseLink(diseaseModel.getDiseaseId(), diseaseModel.getDiseaseTerm()); - stringBuilder.append(String.format("
Phenotypic similarity %.3f to %s associated with %s.
", model.getScore(), diseaseLink, model.getHumanGeneSymbol())); - break; - case MOUSE: - stringBuilder.append(String.format("
Phenotypic similarity %.3f to mouse mutant involving %s.
", model.getScore(), model.getHumanGeneSymbol(), model.getHumanGeneSymbol())); - break; - case FISH: - stringBuilder.append(String.format("
Phenotypic similarity %.3f to zebrafish mutant involving %s.
", model.getScore(), model.getHumanGeneSymbol(), model.getHumanGeneSymbol())); - break; - } - makeBestPhenotypeMatchHtml(stringBuilder, bestMatchesForModel); - stringBuilder.append("
"); - } - - for (Model model : ppiEvidence) { - String stringDbLink = "http://string-db.org/newstring_cgi/show_network_section.pl?identifiers=" + geneSymbol + "%0D" + model.getHumanGeneSymbol() + "&required_score=700&network_flavor=evidence&species=9606&limit=20"; - - Map bestModelPhenotypeMatches = model.getBestPhenotypeMatchForTerms(); - switch (model.getOrganism()) { - case HUMAN: - DiseaseModel diseaseModel = (DiseaseModel) model; - String diseaseLink = makeDiseaseLink(diseaseModel.getDiseaseId(), diseaseModel.getDiseaseTerm()); - stringBuilder.append(String.format("
Proximity in interactome to %s and phenotypic similarity to %s associated with %s.
", stringDbLink, model.getHumanGeneSymbol(), diseaseLink, model.getHumanGeneSymbol())); - break; - case MOUSE: - stringBuilder.append(String.format("
Proximity in interactome to %s and phenotypic similarity to mouse mutant of %s.
", stringDbLink, model.getHumanGeneSymbol(), model.getHumanGeneSymbol())); - break; - case FISH: - stringBuilder.append(String.format("
Proximity in interactome to %s and phenotypic similarity to fish mutant of %s.
", stringDbLink, model.getHumanGeneSymbol(), model.getHumanGeneSymbol())); - break; - } - makeBestPhenotypeMatchHtml(stringBuilder, bestModelPhenotypeMatches); - stringBuilder.append("
"); - } - String html = stringBuilder.toString(); - if (html.isEmpty()) { - return "
No phenotype or PPI evidence
"; - } - return html; - } - - private void makeBestPhenotypeMatchText(StringBuilder stringBuilder, Map bestModelPhenotypeMatches) { - for (PhenotypeTerm queryTerm : queryPhenotypeTerms) { - if (bestModelPhenotypeMatches.containsKey(queryTerm)) {// && bestModelPhenotypeMatches.get(queryTerm).getScore() > 1.75) {// RESTRICT TO HIGH QUALITY MATCHES - PhenotypeMatch match = bestModelPhenotypeMatches.get(queryTerm); - PhenotypeTerm matchTerm = match.getMatchPhenotype(); - stringBuilder.append(String.format("%s (%s)-%s (%s), ", queryTerm.getTerm(), queryTerm.getId(), matchTerm.getTerm(), matchTerm.getId())); - } else { - //stringBuilder.append(String.format("%s (%s)-No match, ", queryTerm.getTerm(), queryTerm.getId())); - } - } - } - - private void makeBestPhenotypeMatchHtml(StringBuilder stringBuilder, Map bestModelPhenotypeMatches) { - stringBuilder.append("
Best Phenotype Matches:
"); - for (PhenotypeTerm queryTerm : queryPhenotypeTerms) { - if (bestModelPhenotypeMatches.containsKey(queryTerm)) { - PhenotypeMatch match = bestModelPhenotypeMatches.get(queryTerm); - PhenotypeTerm matchTerm = match.getMatchPhenotype(); - stringBuilder.append(String.format("
%s, %s - %s, %s
", queryTerm.getId(), queryTerm.getTerm(), matchTerm.getId(), matchTerm.getTerm())); - } else { - stringBuilder.append(String.format("
%s, %s -
", queryTerm.getId(), queryTerm.getTerm())); - } - } - } - - private String makeDiseaseLink(String diseaseId, String diseaseTerm) { - String[] databaseNameAndIdentifier = diseaseId.split(":"); - String databaseName = databaseNameAndIdentifier[0]; - String id = databaseNameAndIdentifier[1]; - if (databaseName.equals("OMIM")) { - return "" + diseaseTerm + ""; - } else { - return "" + diseaseTerm + ""; - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePrioritiser.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePrioritiser.java deleted file mode 100644 index 5b46da24c..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePrioritiser.java +++ /dev/null @@ -1,51 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.Gene; -import java.util.List; - -/** - * A non-functional prioritiser to be used as a default stand-in for a real one. - * - * @author Jules Jacobsen - */ -public class NoneTypePrioritiser implements Prioritiser { - - @Override - public void prioritizeGenes(List geneList) { - //Deliberately empty - this prioritiser does nothing. - } - - @Override - public PriorityType getPriorityType() { - return PriorityType.NONE; - } - - @Override - public int hashCode() { - int hash = 5; - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final NoneTypePrioritiser other = (NoneTypePrioritiser) obj; - return true; - } - - @Override - public String toString() { - return "NoneTypePrioritiser{}"; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/OMIMPriority.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/OMIMPriority.java deleted file mode 100644 index 279b10ff7..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/OMIMPriority.java +++ /dev/null @@ -1,207 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.Gene; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.Collections; -import java.util.List; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * This class is designed to do two things. First, it will add annotations to - * genes based on their annotations to OMIM or Orphanet disease entries in the - * exomiser database (Note that the app PopulateExomiserDatabase.jar, from this - * software package is used to put the data into the database; see there for - * more information). The tables omim and orphanet are used to - * store/retrieve this information. The second purpose of this class is to check - * whether the variants found in the VCF file match with the mode of inheritance - * listed for the disease (column "inheritance" of the omim table; TODO-add - * similar functionality for Orphanet). Thus, if we find a heterozygous mutation - * but the disease is autosomal recessive, then it the corresponding - * disease/gene is not a good candidate, and its OMIM relevance score is reduced - * by a factor of 50%. See the function {@link #getInheritanceFactor} for - * details on this weighting scheme. - * - * @author Peter N Robinson - * @version 0.16 (28 January,2014) - */ -public class OMIMPriority implements Prioritiser { - - private static final Logger logger = LoggerFactory.getLogger(OMIMPriority.class); - - private DataSource dataSource; - - /** - * Flag for output field representing OMIM. - */ - @Override - public PriorityType getPriorityType() { - return PriorityType.OMIM_PRIORITY; - } - - /** - * For now, this method just annotates each gene with OMIM data, if - * available, and shows a link in the HTML output. However, we can use this - * method to implement a Phenomizer-type prioritization at a later time - * point. - * - * @param genes A list of the {@link exomizer.exome.Gene Gene} objects that - * have suvived the filtering (i.e., have rare, potentially pathogenic - * variants). - */ - @Override - public void prioritizeGenes(List genes) { - for (Gene g : genes) { - OMIMPriorityResult mimrel = retrieveOmimData(g); - g.addPriorityResult(mimrel); - } - } - - /** - * Note that if there is no EntrezGene IDfor this gene, its field - * entrezGeneID will be set to -10. If this is the case, we return an empty - * but initialized RelevanceScore object. Otherwise, we retrieve a list of - * all OMIM and Orphanet diseases associated with the entrez Gene. - * - * @param gene The gene which is being evaluated. - */ - private OMIMPriorityResult retrieveOmimData(Gene gene) { - OMIMPriorityResult priorityResult = new OMIMPriorityResult(); - int entrez = gene.getEntrezGeneID(); - if (entrez < 0) { - return priorityResult; - - } - getOmimDiseasesForGene(gene, priorityResult); -// findOrphaNetDiseasesForGene(gene, priorityResult); - - return priorityResult; - } - - private void getOmimDiseasesForGene(Gene gene, OMIMPriorityResult rel) { - String omimQuery = "SELECT disease_id, omim_gene_id, diseasename, type, inheritance " - + "FROM disease " - + "WHERE gene_id = ?"; - - try (Connection connection = dataSource.getConnection()) { - PreparedStatement preparedStatement = connection.prepareStatement(omimQuery); - preparedStatement.setInt(1, gene.getEntrezGeneID()); - ResultSet rs = preparedStatement.executeQuery(); - while (rs.next()) { - // The way the db was constructed, there is just one line for each such query. - // phenmim,genemim,diseasename,type"+ - String diseaseId = rs.getString(1); - String diseaseName = rs.getString(3); - if (diseaseId.startsWith("OMIM")) { - String omimGeneId = rs.getString(2); - char typ = rs.getString(4).charAt(0); - char inheritance = rs.getString(5).charAt(0); - float factor = getInheritanceFactor(gene, inheritance); - rel.addRow(diseaseId, omimGeneId, diseaseName, typ, inheritance, factor); - } else { - rel.addOrphanetRow(diseaseId, diseaseName); - - } - } - } catch (SQLException e) { - logger.error("Error executing OMIM query", e); - } - } - - private void findOrphaNetDiseasesForGene(Gene gene, OMIMPriorityResult rel) { - // Now try to get the Orphanet data - String orphanetQuery = "SELECT disease_id, diseasename " - + "FROM disease " - + "WHERE disease_id LIKE '%ORPHA%' AND gene_id = ?"; - - try (Connection connection = dataSource.getConnection()) { - PreparedStatement preparedStatement = connection.prepareStatement(orphanetQuery); - preparedStatement.setInt(1, gene.getEntrezGeneID()); - ResultSet rs = preparedStatement.executeQuery(); - while (rs.next()) { - String orphanum = rs.getString(1); - String disease = rs.getString(2); - rel.addOrphanetRow(orphanum, disease); - } - } catch (SQLException e) { - logger.error("Exception caused by Orphanet query!", e); - } - } - - /** - * This function checks whether the mode of inheritance of the disease - * matches the observed pattern of variants. That is, if the disease is - * autosomal recessive and we have just one heterozygous mutation, then the - * disease is probably not the correct diagnosis, and we assign it a factor - * of 0.5. Note that hemizygous X chromosomal variants are usually called as - * homozygous ALT in VCF files, and thus it is not reliable to distinguish - * between X-linked recessive and dominant inheritance. Therefore, we return - * 1 for any gene with X-linked inheritance if the disease in question is - * listed as X chromosomal. - */ - private float getInheritanceFactor(Gene gene, char inheritance) { - if (inheritance == 'U') { - /* inheritance unknown (not mentioned in OMIM or not annotated correctly in HPO */ - return 1f; - - } else if (inheritance == 'Y') { - /* Y chromosomal, rare. */ - return 1f; - } else if (inheritance == 'M') { - /* mitochondrial. */ - return 1f; - } else if (inheritance == 'S') { - /* gene only associated with somatic mutations */ - return 0.5f; - } else if (inheritance == 'P') { - /* gene only associated with polygenic */ - return 0.5f; - } else if (gene.getInheritanceModes().isEmpty()) { - /* No mode of inheritance is defined (UNDEFINED) */ - return 1f; - } else if (gene.isCompatibleWithDominant() && (inheritance == 'D' || inheritance == 'B')) { - /* inheritance of disease is dominant or both (dominant/recessive) */ - return 1f; - } else if (gene.isCompatibleWithRecessive() && (inheritance == 'R' || inheritance == 'B')) { - /* inheritance of disease is recessive or both (dominant/recessive) */ - return 1f; - } else if (gene.isXChromosomal() && inheritance == 'X') { - return 1f; - } else { - return 0.5f; - } - } - - public void setDataSource(DataSource dataSource) { - this.dataSource = dataSource; - } - - @Override - public int hashCode() { - int hash = 5; - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final OMIMPriority other = (OMIMPriority) obj; - return true; - } - - @Override - public String toString() { - return "OmimPrioritiser{}"; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/OMIMPriorityResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/OMIMPriorityResult.java deleted file mode 100644 index 9d1ea36e6..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/OMIMPriorityResult.java +++ /dev/null @@ -1,178 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.ArrayList; -import java.util.List; - -/** - * This class is used to annotate with OMIM data based on the link between the - * entrez Gene and the OMIM data in the exomizer database table called omim. - * There is no actual filtering out of variants. - * - * @author Peter N Robinson - * @version 0.08 (9 February, 2014). - */ -public class OMIMPriorityResult implements PriorityResult { - - /** - * A list of all diseases in OMIM that are associated with the gene affected - * by the variant. - */ - private final List mimEntryList; - /** - * This score will be set to 1 if the variant distribution in the gene - * matches the mode of inheritance of the disease in the HPO annotation - * data. For instance, if the gene has a homozygous variant, than a disease - * with autosomal recessive inheritance would get a score of 1.0. If the - * gene only has one het variant, the disease would get a score of 0.5. - */ - private static final float DEFAULT_SCORE = -0.1f; - - private float score = DEFAULT_SCORE; - - /** - * @return true (Always, this Triage is not intended to filter out variants, - * only to annotate them) - */ - public boolean passesFilter() { - return true; - } - - /** - * @return return 1.0 for true - */ - public float filterResult() { - return 1f; - } - - /** - * @return A string with a summary of the filtering results . - */ - public String getFilterResultSummary() { - return null; - } - - /** - * @return A list with detailed results of filtering. The list is intended - * to be displayed as an HTML list if desired. - */ - public List getFilterResultList() { - return this.mimEntryList; - } - - @Override - public PriorityType getPriorityType() { - return PriorityType.OMIM_PRIORITY; - } - - /** - * @return 1 if the inheritance pattern of the diseases associated with the - * gene match the variants, otherwise 0.5 - */ - @Override - public float getScore() { - if (this.score == DEFAULT_SCORE) { - return 1f; - } else { - return this.score; - } - } - - public boolean is_empty() { - return this.mimEntryList.size() == 0; - } - - /** - * This method adds one row to the list of OMIM diseases that will be shown - * in the HTML output. It also updates the score of this relevance object, - * which is set to one if at least one of the diseases associated with the - * gene has a mode of inheritance that is compatible with the distribution - * of variants observed in the gene in the VCF file. - * - * @param phenmim The MIM number for the phenotype entry associated with the - * gene - * @param genemim The MIM number for the gene entry in OMIM for this gene - * @param disease Name of the disease in English - * @param typ The type of the diseases (Mendelian, susceptibility, - * non-disease) - * @param inheritance One of 'D', 'R', 'B', 'X'. 'Y', 'M' - * @param factor Factor for whether the inheritance pattern matches (see - * above). - */ - public void addRow(String phenmim, String genemim, String disease, char typ, char inheritance, float factor) { - String mimGeneUrl = String.format("http://www.omim.org/entry/%s", genemim); - String[] phenParts = phenmim.split(":"); - String mimPhenUrl = String.format("http://www.omim.org/entry/%s", phenParts[1]); - String display = null; - if (inheritance == 'D') { - display = String.format("%s [%s; gene: %s], autosomal dominant", disease, phenmim, genemim); - } else if (inheritance == 'R') { - display = String.format("%s [%s; gene: %s], autosomal recessive", disease, phenmim, genemim); - } else if (inheritance == 'B') { - display = String.format("%s [%s; gene: %s], autosomal dominant/recessive", disease, phenmim, genemim); - } else if (inheritance == 'X') { - display = String.format("%s [%s; gene: %s], X chromosomal", disease, phenmim, genemim); - } else { - display = String.format("%s [%s; gene: %s]", disease, phenmim, genemim); - } - //String href = String.format("%s",mimPhenUrl,display); - String href = String.format("%s", mimPhenUrl, disease); - if (factor > this.score) { - this.score = factor; - } - - if (typ == 'D') { - mimEntryList.add(href); - } else if (typ == 'N') { - String row = String.format("%s (non-disease)", href); - mimEntryList.add(row); - } else if (typ == 'S') { - String row = String.format("%s (susceptibility)", href); - mimEntryList.add(row); - } else if (typ == '?') { - String row = String.format("%s (unconfirmed)", href); - mimEntryList.add(row); - } else if (typ == 'C') { - String row = String.format("%s (CNV)", href); - mimEntryList.add(row); - } - } - - /** - * @param orphanum The Number of the disease in Orphanet. - * @param disease The name of the disease in English - */ - public void addOrphanetRow(String orphanum, String disease) { - String[] orphaParts = orphanum.split(":"); - String url = String.format("http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=%s", orphaParts[1]); - String href = String.format("%s", - url, disease); - mimEntryList.add(href); - } - - public OMIMPriorityResult() { - this.mimEntryList = new ArrayList(); - } - - /** - * @return A string with HTML code producing a bullet list of OMIM - * entries/links. - */ - @Override - public String getHTMLCode() { - StringBuilder sb = new StringBuilder("
"); - if (is_empty()) { - return "
No known disease
"; - } - sb.append("
Known diseases"); - if (this.score < 1f && this.score != DEFAULT_SCORE) { - sb.append(" Observed variants not compatible with mode of inheritance:"); - } - sb.append("
"); - for (String s : this.mimEntryList) { - sb.append("
" + s + "
\n"); - } - sb.append("
"); - return sb.toString(); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhenixPriority.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhenixPriority.java deleted file mode 100644 index 4e7bd0947..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhenixPriority.java +++ /dev/null @@ -1,517 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.prioritisers.util.ScoreDistribution; -import de.charite.compbio.exomiser.core.prioritisers.util.ScoreDistributionContainer; -import hpo.HPOutils; -import java.io.BufferedReader; -import java.io.File; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Objects; -import java.util.Set; -import ontologizer.go.OBOParser; -import ontologizer.go.OBOParserException; -import ontologizer.go.Ontology; -import ontologizer.go.Term; -import ontologizer.go.TermContainer; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import similarity.SimilarityUtilities; -import similarity.concepts.ResnikSimilarity; -import similarity.objects.InformationContentObjectSimilarity; -import sonumina.math.graph.SlimDirectedGraphView; - -/** - * Filter variants according to the phenotypic similarity of the specified - * disease to mouse models disrupting the same gene. We use semantic similarity - * calculations in the uberpheno. - * - * The files required for the constructor of this filter should be downloaded - * from: {@code http://purl.obolibrary.org/obo/hp/uberpheno/} - * (HSgenes_crossSpeciesPhenoAnnotation.txt, crossSpeciesPheno.obo) - * - * @author Sebastian Koehler - * @version 0.06 (6 December, 2013) - */ -public class PhenixPriority implements Prioritiser { - - private static final Logger logger = LoggerFactory.getLogger(PhenixPriority.class); - - /** - * The HPO as Ontologizer-Ontology object - */ - private Ontology hpo; - - /** - * The HPO as SlimDirectedGraph (fast access to ancestors etc.) - */ - private SlimDirectedGraphView hpoSlim; - - /** - * A list of error-messages - */ - private List errorMessages = null; - - - /** - * The semantic similarity measure used to calculate phenotypic similarity - */ - private InformationContentObjectSimilarity similarityMeasure; - /** - * The HPO terms entered by the user describing the individual who is being - * sequenced by exome-sequencing or clinically relevant genome panel. - */ - private List hpoQueryTerms; - - private float DEFAULT_SCORE = 0f; - - private Map> geneId2annotations; - - private Map term2ic; - - private final ScoreDistributionContainer scoredistributionContainer = new ScoreDistributionContainer(); - - private int numberQueryTerms; - /** - * A counter of the number of genes that could not be found in the database - * as being associated with a defined disease gene. - */ - private int offTargetGenes = 0; - /** - * Total number of genes used for the query, including genes with no - * associated disease. - */ - private int analysedGenes; - - private boolean symmetric; - /** - * Path to the directory that has the files needed to calculate the score - * distribution. - */ - private String scoredistributionFolder; - /** - * Keeps track of the maximum semantic similarity score to date - */ - private double maxSemSim = 0d; - /** - * Keeps track of the maximum negative log of the p value to date - */ - private double maxNegLogP = 0d; - - /** - * Create a new instance of the PhenixPriority. - * - * @param scoreDistributionFolder Folder which contains the score - * distributions (e.g. 3.out, 3_symmetric.out, 4.out, 4_symmetric.out). It - * must also contain the files hp.obo (obtained from - * {@code http://compbio.charite.de/hudson/job/hpo/}) and - * ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt-file (obtained from - * {@code http://compbio.charite.de/hudson/job/hpo.annotations.monthly/lastSuccessfulBuild/artifact/annotation/}). - * @param hpoQueryTermIds List of HPO terms - * @param symmetric Flag to indicate if the semantic similarity score should - * be calculated using the symmetrix formula. - * @throws ExomizerInitializationException - * @see Uberpheno - * Hudson page - */ - public PhenixPriority(String scoreDistributionFolder, List hpoQueryTermIds, boolean symmetric) { - - if (hpoQueryTermIds.isEmpty()) { - throw new PhenixException("Please supply some HPO terms. PhenIX is unable to prioritise genes without these."); - } - - if (!scoreDistributionFolder.endsWith(File.separatorChar + "")) { - scoreDistributionFolder += File.separatorChar; - } - this.scoredistributionFolder = scoreDistributionFolder; - String hpoOboFile = String.format("%s%s", scoreDistributionFolder, "hp.obo"); - String hpoAnnotationFile = String.format("%s%s", scoreDistributionFolder, "ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt"); - parseData(hpoOboFile, hpoAnnotationFile); - - Set hpoQueryTermsHS = new HashSet<>(); - for (String termIdString : hpoQueryTermIds) { - Term t = hpo.getTermIncludingAlternatives(termIdString); - if (t != null) { - hpoQueryTermsHS.add(t); - } else { - logger.error("invalid term-id given: " + termIdString); - } - } - hpoQueryTerms = new ArrayList<>(); - hpoQueryTerms.addAll(hpoQueryTermsHS); - this.symmetric = symmetric; - - numberQueryTerms = hpoQueryTerms.size(); - if (!scoredistributionContainer.didParseDistributions(symmetric, numberQueryTerms)) { - scoredistributionContainer.parseDistributions(symmetric, numberQueryTerms, scoreDistributionFolder); - } - - ResnikSimilarity resnik = new ResnikSimilarity(hpo, (HashMap) term2ic); - similarityMeasure = new InformationContentObjectSimilarity(resnik, symmetric, false); - } - - /** - * STUB CONSTRUCTOR - ONLY USED FOR TESTING PURPOSES TO AVOID NULL POINTERS FROM ORIGINAL CONSTRUCTOR. DO NOT USE FOR PRODUCTION CODE!!!! - * @param hpoIds - * @param symmetric - */ - protected PhenixPriority (List hpoIds, boolean symmetric) { - this.symmetric = symmetric; - } - - private void parseData(String hpoOboFile, String hpoAnnotationFile) { - //The phenomizerData directory must contain the files "hp.obo", "ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt" - //as well as the score distribution files "*.out", all of which can be downloaded from the HPO hudson server. - try { - parseOntology(hpoOboFile); - } catch (OBOParserException e) { - logger.error("Error parsing ontology file {}", hpoOboFile, e); - } catch (IOException ioe) { - logger.error("I/O Error with ontology file{}", hpoOboFile, ioe); - } - try { - parseAnnotations(hpoAnnotationFile); - } catch (IOException e) { - logger.error("Error parsing annotation file {}", hpoAnnotationFile, e); - } - } - - /** - * Parse the HPO phenotype annotation file (e.g., phenotype_annotation.tab). - * The point of this is to get the links between diseases and HPO phenotype - * terms. The hpoAnnotationFile is The - * ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt-file - * - * @param hpoAnnotationFile path to the file - */ - private void parseAnnotations(String hpoAnnotationFile) throws IOException { - geneId2annotations = new HashMap<>(); - - BufferedReader in = new BufferedReader(new FileReader(hpoAnnotationFile)); - String line = null; - while ((line = in.readLine()) != null) { - if (line.startsWith("#")) { - continue; - } - - String[] split = line.split("\t"); - String entrez = split[0]; - Term term = null; - try { - /* split[4] is the HPO term field of an annotation line. */ - term = hpo.getTermIncludingAlternatives(split[3]); - } catch (IllegalArgumentException e) { - logger.error("Unable to get term for line \n{}\n", line); - logger.error("The offending field was '{}'", split[3]); - for (int k = 0; k < split.length; ++k) { - logger.error("{} '{}'", k, split[k]); - } - term = null; - } - if (term == null) { - continue; - } - - List annotations; - - if (geneId2annotations.containsKey(entrez)) { - annotations = geneId2annotations.get(entrez); - } else { - annotations = new ArrayList<>(); - } - annotations.add(term); - geneId2annotations.put(entrez, annotations); - } - in.close(); - - // cleanup annotations - for (String entrez : geneId2annotations.keySet()) { - List terms = geneId2annotations.get(entrez); - Set uniqueTerms = new HashSet<>(terms); - List uniqueTermsAL = new ArrayList<>(); - uniqueTermsAL.addAll(uniqueTerms); - List termsMostSpecific = HPOutils.cleanUpAssociation((ArrayList)uniqueTermsAL, hpoSlim, hpo.getRootTerm()); - geneId2annotations.put(entrez, termsMostSpecific); - } - - // prepare IC computation - final Map> annotationTerm2geneIds = new HashMap<>(); - for (String oId : geneId2annotations.keySet()) { - List annotations = geneId2annotations.get(oId); - for (Term annot : annotations) { - List termAndAncestors = hpoSlim.getAncestors(annot); - for (Term term : termAndAncestors) { - Set objectsAnnotatedByTerm; - // here we store which objects have been annotated with this term - if (annotationTerm2geneIds.containsKey(term)) { - objectsAnnotatedByTerm = annotationTerm2geneIds.get(term); - } else { - objectsAnnotatedByTerm = new HashSet<>(); - } - // add the current object - objectsAnnotatedByTerm.add(oId); - annotationTerm2geneIds.put(term, objectsAnnotatedByTerm); - } - } - } - term2ic = caclulateTermIC(hpo, annotationTerm2geneIds); - - } - - /** - * Parses the human-phenotype-ontology.obo file (or equivalently, the hp.obo - * file from our Hudosn server). - * - * @param hpoOboFile path to the hp.obo file. - */ - private Ontology parseOntology(String hpoOboFile) throws IOException, OBOParserException { - OBOParser oboParser = new OBOParser(hpoOboFile, OBOParser.PARSE_XREFS); - String parseInfo = oboParser.doParse(); - logger.info(parseInfo); - - TermContainer termContainer = new TermContainer(oboParser.getTermMap(), oboParser.getFormatVersion(), oboParser.getDate()); - Ontology hpo = new Ontology(termContainer); - hpo.setRelevantSubontology(termContainer.get(HPOutils.organAbnormalityRootId).getName()); - SlimDirectedGraphView hpoSlim = hpo.getSlimGraphView(); - - this.hpo = hpo; - this.hpoSlim = hpoSlim; - return hpo; - } - - /** - * Flag to output results of filtering against Uberpheno data. - */ - @Override - public PriorityType getPriorityType() { - return PriorityType.PHENIX_PRIORITY; - } - - /** - * Prioritize a list of candidate {@link exomizer.exome.Gene Gene} objects - * (the candidate genes have rare, potentially pathogenic variants). - * - * @param genes List of candidate genes. - * @see exomizer.filter.Filter#filter_list_of_variants(java.util.ArrayList) - */ - @Override - public void prioritizeGenes(List genes) { - analysedGenes = genes.size(); - - for (Gene gene : genes) { - PhenixPriorityResult phenomizerRelScore = scoreVariantHPO(gene); - gene.addPriorityResult(phenomizerRelScore); - //System.out.println("Phenomizer Gene="+gene.getGeneSymbol()+" score=" +phenomizerRelScore.getScore()); - } -// String s = String.format("Data investigated in HPO for %d genes. No data for %d genes", analysedGenes, this.offTargetGenes); - //System.out.println(s); - normalizePhenomizerScores(genes); - } - - /** - * The gene relevance scores are to be normalized to lie between zero and - * one. This function, which relies upon the variable {@link #maxSemSim} - * being set in {@link #scoreVariantHPO}, divides each score by - * {@link #maxSemSim}, which has the effect of putting the phenomizer scores - * in the range [0..1]. Note that for now we are using the semantic - * similarity scores, but we should also try the P value version (TODO). - * Note that this is not the same as rank normalization! - */ - private void normalizePhenomizerScores(List genes) { - if (maxSemSim < 1) { - return; - } - PhenixPriorityResult.setNormalizationFactor(1d / maxSemSim); - /*for (Gene g : genes) { - float score = g.getRelevagetScorepe.PHENIX_PRIORITY); - score /= this.maxSemSim; - g.setScore(FilterType.PHENIX_PRIORITY, score); - }*/ - } - - /** - * @param gene A {@link exomizer.exome.Gene Gene} whose score is to be - * determined. - */ - private PhenixPriorityResult scoreVariantHPO(Gene gene) { - - int entrezGeneId = gene.getEntrezGeneID(); - String entrezGeneIdString = entrezGeneId + ""; - - if (!geneId2annotations.containsKey(entrezGeneIdString)) { - //System.err.println("INVALID GENE GIVEN (will set to default-score): Entrez ID: " + g.getEntrezGeneID() + " / " + g.getGeneSymbol()); - this.offTargetGenes++; - return new PhenixPriorityResult(DEFAULT_SCORE); - } - - List annotationsOfGene = geneId2annotations.get(entrezGeneIdString); - - double similarityScore = similarityMeasure.computeObjectSimilarity( (ArrayList) hpoQueryTerms, (ArrayList) annotationsOfGene); - if (similarityScore > maxSemSim) { - maxSemSim = similarityScore; - } - if (Double.isNaN(similarityScore)) { - errorMessages.add("Error: score was NAN for gene:" + gene + " : " + hpoQueryTerms + " <-> " + annotationsOfGene); - } - - ScoreDistribution scoreDist = scoredistributionContainer.getDistribution(entrezGeneIdString, numberQueryTerms, symmetric, - scoredistributionFolder); - - // get the pvalue - double rawPvalue; - if (scoreDist == null) { - return new PhenixPriorityResult(DEFAULT_SCORE); - } else { - rawPvalue = scoreDist.getPvalue(similarityScore, 1000.); - rawPvalue = Math.log(rawPvalue) * -1.0; /* Negative log of p value : most significant get highest score */ - - if (rawPvalue > maxNegLogP) { - maxNegLogP = rawPvalue; - } - } - - return new PhenixPriorityResult(rawPvalue, similarityScore); - // // filter genes not associated with any disease - // if - // (!HPOutils.diseaseGeneMapper.entrezId2diseaseIds.containsKey(entrezGeneId)) - // return new PhenixPriorityResult(DEFAULT_SCORE); - // - // double sum = 0; // sum of semantic similarity - // int num = 0; // required to make average - // for (DiseaseId diseaseId : - // HPOutils.diseaseGeneMapper.entrezId2diseaseIds.get(entrezGeneId)) { - // - // DiseaseEntry diseaseEntry = HPOutils.diseaseId2entry.get(diseaseId); - // - // if (diseaseEntry == null) { - // // System.out.println("diseaseID = " + diseaseId); - // // System.out.println("diseaseEntry = NULL " ); - // // return new PhenixPriorityResult(DEFAULT_SCORE); - // continue; - // } - // ArrayList termsAL = diseaseEntry.getOrganAssociatedTerms(); - // if (termsAL == null || termsAL.size() < 1) { - // continue; - // // return new PhenixPriorityResult(DEFAULT_SCORE); - // } - // double similarityScore = - // similarityMeasure.computeObjectSimilarity(hpoQueryTerms, termsAL); - // sum += similarityScore; - // ++num; - // } - // if (num == 0) { - // return new PhenixPriorityResult(DEFAULT_SCORE); - // } - // - // double avg = sum / num; - // return new PhenixPriorityResult(avg); - } - - private Map caclulateTermIC(Ontology ontology, Map> term2objectIdsAnnotated) { - - Term root = ontology.getRootTerm(); - Map term2frequency = new HashMap<>(); - for (Term t : term2objectIdsAnnotated.keySet()) { - term2frequency.put(t, term2objectIdsAnnotated.get(t).size()); - } - - int maxFreq = term2frequency.get(root); - Map term2informationContent = SimilarityUtilities.caculateInformationContent(maxFreq, (HashMap) term2frequency); - - int frequencyZeroCounter = 0; - double ICzeroCountTerms = -1 * (Math.log(1 / (double) maxFreq)); - - for (Term t : ontology) { - if (!term2frequency.containsKey(t)) { - ++frequencyZeroCounter; - term2informationContent.put(t, ICzeroCountTerms); - } - } - - logger.info("WARNING: Frequency of {} terms was zero!! Set IC of these to : {}", frequencyZeroCounter, ICzeroCountTerms); - return term2informationContent; - } - - private static class PhenixException extends RuntimeException { - - private PhenixException(String message) { - super(message); - } - } - -//TODO move this to the messages -// /** -// * @return an ul list with summary of phenomizer prioritization. -// */ -// @Override -// public String getHTMLCode() { -// String s = String.format("Phenomizer: %d genes were evaluated; no phenotype data available for %d of them", -// this.analysedGenes, this.offTargetGenes); -// String t = null; -// if (symmetric) { -// t = String.format("Symmetric Phenomizer query with %d terms was performed", this.numberQueryTerms); -// } else { -// t = String.format("Asymmetric Phenomizer query with %d terms was performed", this.numberQueryTerms); -// } -// String u = String.format("Maximum semantic similarity score: %.2f, maximum negative log. of p-value: %.2f", -// this.maxSemSim, this.maxNegLogP); -// return String.format("
  • %s
  • %s
  • %s
\n", s, t, u); -// -// } - - @Override - public int hashCode() { - int hash = 7; - hash = 13 * hash + Objects.hashCode(this.hpoQueryTerms); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PhenixPriority other = (PhenixPriority) obj; - if (!Objects.equals(this.hpoQueryTerms, other.hpoQueryTerms)) { - return false; - } - if (this.symmetric != other.symmetric) { - return false; - } - return true; - } - - @Override - public String toString() { - return "PhenixPriority{" + "hpoQueryTerms=" + hpoQueryTerms + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhenixPriorityResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhenixPriorityResult.java deleted file mode 100644 index 7816a2191..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhenixPriorityResult.java +++ /dev/null @@ -1,66 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.ArrayList; -import java.util.List; - -/** - * Semantic Similarity in HPO - * - * @author Sebastian Koehler - * @version 0.05 (6 January, 2014). - */ -public class PhenixPriorityResult implements PriorityResult { - - /** - * The semantic similarity score as implemented in PhenIX (also know as - * Phenomizer). Note that this is not the p-value methodology in that paper, - * but merely the simple semantic similarity score. - */ - private double hpoSemSimScore; - /** - * The negative logarithm of the p-value. e.g., 10 means p=10^{-10} - */ - private final double negativeLogPval; - - private static double NORMALIZATION_FACTOR = 1f; - - public static void setNormalizationFactor(double factor) { - NORMALIZATION_FACTOR = factor; - } - - /** - * @param negLogPVal The negative logarithm of the p-val - */ - public PhenixPriorityResult(double negLogPVal) { - this.negativeLogPval = negLogPVal; - } - - public PhenixPriorityResult(double negLogPVal, double semScore) { - this.negativeLogPval = negLogPVal; - this.hpoSemSimScore = semScore; - } - - @Override - public PriorityType getPriorityType() { - return PriorityType.PHENIX_PRIORITY; - } - - /** - * @see exomizer.priority.IRelevanceScore#getRelevanceScore - * @return the HPO semantic similarity score calculated via Phenomizer. - */ - @Override - public float getScore() { - return (float) (hpoSemSimScore * NORMALIZATION_FACTOR); - } - - /** - * @see exomizer.filter.Triage#getHTMLCode() - */ - @Override - public String getHTMLCode() { - return String.format("
PhenIX semantic similarity score: %.2f (p-value: %f)
", - this.hpoSemSimScore, Math.exp(-1 * this.negativeLogPval)); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhivePriority.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhivePriority.java deleted file mode 100644 index 037d32f3a..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhivePriority.java +++ /dev/null @@ -1,329 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.HashMap; -import de.charite.compbio.exomiser.core.model.Gene; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Map; -import java.util.Objects; -import java.util.Set; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Filter variants according to the phenotypic similarity of the specified - * clinical phenotypes to mouse models disrupting the same gene. We use MGI - * annotated phenotype data and the Phenodigm/OWLSim algorithm. The filter is - * implemented with an SQL query. - *

- * This class prioritizes the genes that have survived the initial VCF filter - * (i.e., it is use on genes for which we have found rare, potentially - * pathogenic variants). - *

- * This class uses a database connection that it obtains from the main Exomizer - * driver program (if the Exomizer was started from the command line) or from a - * tomcat server (etc.) if the Exomizer was called from a Webserver. - * - * @author Damian Smedley - * @version 0.05 (April 6, 2013) - */ -public class PhivePriority implements Prioritiser { - - private static final Logger logger = LoggerFactory.getLogger(PhivePriority.class); - - private static final PriorityType PRIORITY_TYPE = PriorityType.PHIVE_PRIORITY; - private static final float NO_PHENOTYPE_HIT_SCORE = 0.1f; - static final float NO_MOUSE_MODEL_SCORE = 0.6f; - - private final List hpoIds; - - float bestMaxScore = 0f; - float bestAvgScore = 0f; - - private DataSource dataSource; - - /** - * Keeps track of the number of variants for which data was available in - * Phenodigm. - */ - private int foundDataForMgiPhenodigm; - - public PhivePriority(List hpoIds) { - this.hpoIds = hpoIds; - //This can be moved into a report section - FilterReport should probably turn into an AnalysisStepReport - //Then can remove getMessages from the interface. -// messages.add(String.format("Mouse PhenoDigm Filter")); -// if (disease != null) { -// String url = String.format("http://omim.org/%s", disease); -// if (disease.contains("ORPHANET")) { -// String diseaseId = disease.split(":")[1]; -// url = String.format("http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=%s", diseaseId); -// } -// String anchor = String.format("Mouse phenotypes for candidate genes were compared to %s\n", url, disease); -// this.messages.add(String.format("Mouse PhenoDigm Filter for OMIM")); -// messages.add(anchor); -// } else { -// String anchor = String.format("Mouse phenotypes for candidate genes were compared to user-supplied clinical phenotypes"); -// messages.add(anchor); -// } - } - - /** - * Flag to output results of filtering against PhenoDigm data. - */ - @Override - public PriorityType getPriorityType() { - return PRIORITY_TYPE; - } - - @Override - public void prioritizeGenes(List genes) { - - foundDataForMgiPhenodigm = 0; - - Set hpIdsWithPhenotypeMatch = new LinkedHashSet<>(); - Map bestMappedTermScore = new HashMap<>(); - Map bestMappedTermMpId = new HashMap<>(); - Set knownMps = new LinkedHashSet<>(); - Map mappedTerms = new HashMap<>(); - - String mappingQuery = "SELECT mp_id, score FROM hp_mp_mappings M WHERE M.hp_id = ?"; - - for (String hpId : hpoIds) { - try (Connection connection = dataSource.getConnection()) { - PreparedStatement findMappingStatement = connection.prepareStatement(mappingQuery); - findMappingStatement.setString(1, hpId); - ResultSet rs = findMappingStatement.executeQuery(); - int found = 0; - while (rs.next()) { - found = 1; - String mpId = rs.getString(1); - knownMps.add(mpId); - String hashKey = hpId + mpId; - float score = rs.getFloat("score"); - mappedTerms.put(hashKey, score); - if (bestMappedTermScore.containsKey(hpId)) { - if (score > bestMappedTermScore.get(hpId)) { - bestMappedTermScore.put(hpId, score); - bestMappedTermMpId.put(hpId, mpId); - } - } else { - bestMappedTermScore.put(hpId, score); - bestMappedTermMpId.put(hpId, mpId); - } - } - if (found == 1) { - hpIdsWithPhenotypeMatch.add(hpId); - } - } catch (SQLException e) { - logger.error("Problem setting up SQL query: {}", mappingQuery, e); - } - } - calculateBestPhenotypeMatchScores(hpIdsWithPhenotypeMatch, bestMappedTermScore, bestMappedTermMpId, mappedTerms); - - for (Gene gene : genes) { - PhivePriorityResult phiveScore = prioritiseGene(gene, knownMps, hpIdsWithPhenotypeMatch, mappedTerms); - gene.addPriorityResult(phiveScore); - } -// messages.add(String.format("Data analysed for %d genes using Mouse PhenoDigm", genes.size())); - } - - private void calculateBestPhenotypeMatchScores(Set hpIdsWithPhenotypeMatch, Map bestMappedTermScore, Map bestMappedTermMpId, Map mappedTerms) { - // calculate perfect mouse model scores - float sumBestScore = 0f; - - int bestHitCounter = 0; - // loop over each hp id should start herre - for (String hpid : hpIdsWithPhenotypeMatch) { - if (bestMappedTermScore.get(hpid) != null) { - float hpScore = bestMappedTermScore.get(hpid); - // add in scores for best match for the HP term - sumBestScore += hpScore; - bestHitCounter++; - if (hpScore > bestMaxScore) { - bestMaxScore = hpScore; - } - // add in MP-HP hits - String mpId = bestMappedTermMpId.get(hpid); - float bestScore = 0f; - for (String hpId2 : hpIdsWithPhenotypeMatch) { - String hashKey = hpId2 + mpId; - if (mappedTerms.containsKey(hashKey) && mappedTerms.get(hashKey) > bestScore) { - //System.out.println("added in best score for mp term:"+mpid); - bestScore = mappedTerms.get(hashKey); - } - } - // add in scores for best match for the MP term - sumBestScore += bestScore; - bestHitCounter++; - if (bestScore > bestMaxScore) { - bestMaxScore = bestScore; - } - } - } - bestAvgScore = sumBestScore / bestHitCounter; - } - - private PhivePriorityResult prioritiseGene(Gene gene, Set knownMps, Set hpIdsWithPhenotypeMatch, Map mappedTerms) { - float mgiScore = NO_PHENOTYPE_HIT_SCORE; - String mgiGeneId = null; - String mgiGeneSymbol = null; - String genesymbol = gene.getGeneSymbol(); - - /* Note that there are two queries. The testGeneStatement basically tests - * whether the gene in question is in the database; it must have both an - * orthologue in the table {@code human2mouse_orthologs}, and there must be - * some data on it in the table {@code mgi_mp}. - * - * Then, we select the MGI gene id (e.g., MGI:1234567), the corresponding - * mouse gene symbol and the phenodigm score. There is currently one score - * for each pair of OMIM diseases and MGI genes. - */ - //TODO: test this using one statement only: - // SELECT mouse_model_id, mp_id, M.mgi_gene_id, M.mgi_gene_symbol - // FROM mgi_mp M, human2mouse_orthologs H - // WHERE M.mgi_gene_id = H.mgi_gene_id AND human_gene_symbol = ? - try (Connection connection = dataSource.getConnection()) { - String testGeneQuery = "SELECT human_gene_symbol " - + "FROM mgi_mp M, human2mouse_orthologs H " - + "WHERE M.mgi_gene_id = H.mgi_gene_id " - + "AND human_gene_symbol = ? LIMIT 1"; - PreparedStatement testGeneStatement = connection.prepareStatement(testGeneQuery); - testGeneStatement.setString(1, genesymbol); - ResultSet rs2 = testGeneStatement.executeQuery(); - if (rs2.next()) { - // calculate score for this gene - String mouseAnnotationQuery = "SELECT mouse_model_id, mp_id, M.mgi_gene_id, M.mgi_gene_symbol " - + "FROM mgi_mp M, human2mouse_orthologs H " - + "WHERE M.mgi_gene_id = H.mgi_gene_id " - + "AND human_gene_symbol = ?"; - PreparedStatement findMouseAnnotationStatement = connection.prepareStatement(mouseAnnotationQuery); - findMouseAnnotationStatement.setString(1, genesymbol); - ResultSet rs = findMouseAnnotationStatement.executeQuery(); - float bestCombinedScore = 0f;// keep track of best score for gene - while (rs.next()) { - int mouseModelId = rs.getInt(1); - //System.out.println("Calculating score for mouse model id "+mouse_model_id+" gene "+genesymbol); - String mpIds = rs.getString(2); - mgiGeneId = rs.getString(3); - mgiGeneSymbol = rs.getString(4); - String[] mpInitial = mpIds.split(","); - List mpList = new ArrayList<>(); - for (String mpId : mpInitial) { - if (knownMps.contains(mpId)) { - mpList.add(mpId); - } - } - - int rowColumnCount = hpIdsWithPhenotypeMatch.size() + mpList.size(); - float maxScore = 0f; - float sumBestHitRowsColumnsScore = 0f; - - for (String hpId : hpIdsWithPhenotypeMatch) { - float bestScore = 0f; - for (String mpId : mpList) { - String hashKey = hpId + mpId; - if (mappedTerms.containsKey(hashKey)) { - float score = mappedTerms.get(hashKey); - // identify best match - if (score > bestScore) { - bestScore = score; - } - } - } - if (bestScore != 0) { - sumBestHitRowsColumnsScore += bestScore; - if (bestScore > maxScore) { - maxScore = bestScore; - } - } - } - // Reciprocal hits - for (String mpId : mpList) { - float bestScore = 0f; - for (String hpId : hpIdsWithPhenotypeMatch) { - String hashKey = hpId + mpId; - if (mappedTerms.containsKey(hashKey)) { - float score = mappedTerms.get(hashKey); - // identify best match - if (score > bestScore) { - bestScore = score; - } - } - } - if (bestScore != 0) { - sumBestHitRowsColumnsScore += bestScore; - if (bestScore > maxScore) { - maxScore = bestScore; - } - } - } - // calculate combined score - if (sumBestHitRowsColumnsScore != 0) { - float avgBestHitRowsColumnsScore = sumBestHitRowsColumnsScore / rowColumnCount; - float combinedScore = 50 * (maxScore / bestMaxScore - + avgBestHitRowsColumnsScore / bestAvgScore); - if (combinedScore > 100) { - combinedScore = 100; - } - // is this the best score so far for this gene? - if (combinedScore > bestCombinedScore) { - bestCombinedScore = combinedScore; - } - } - // do next mouse model - } - rs.close(); - mgiScore = bestCombinedScore / 100; - if (mgiScore >= 0) { - foundDataForMgiPhenodigm++; - } - } else { - // no mouse model exists in MGI for this gene - mgiScore = NO_MOUSE_MODEL_SCORE; - } - rs2.close(); - } catch (SQLException e) { - logger.error("Error executing Phenodigm query: ", e); - } - return new PhivePriorityResult(mgiGeneId, mgiGeneSymbol, mgiScore); - } - - public void setDataSource(DataSource dataSource) { - this.dataSource = dataSource; - } - - @Override - public int hashCode() { - int hash = 5; - hash = 47 * hash + Objects.hashCode(this.hpoIds); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PhivePriority other = (PhivePriority) obj; - if (!Objects.equals(this.hpoIds, other.hpoIds)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "PhivePriority{" + "hpoIds=" + hpoIds + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhivePriorityResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhivePriorityResult.java deleted file mode 100644 index 74c78880a..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PhivePriorityResult.java +++ /dev/null @@ -1,91 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -/** - * Filter Variants on the basis of OWLSim phenotypic comparisons between the HPO - * clinical phenotypes associated with the disease being sequenced and MP - * annotated MGI mouse models. The MGIPhenodigmTriage is created by the - * MGIPhenodigmFilter, one for each tested variant. The MGIPhenodigmTriage - * object can be used to ask whether the variant passes the filter, in this case - * whether it the mouse gene scores greater than the threshold in. If no - * information is available the filter is not applied (ergo the Variant does not - * fail the filter). - *

- * This code was extended on Feb 1, 2013 to show links to the MGI webpage for - * the model in question. - * - * @author Damian Smedley - * @version 0.06 (April 22, 2013). - */ -public class PhivePriorityResult implements PriorityResult { - - /** - * The phenodigm score as calculated by OWLsim. This score indicates the - * similarity between a humam disease and the phenotype of a genetically - * modified mouse model. - */ - private final float phenodigmScore; - /** - * The MGI id of the model most similar to the gene being analysed. For - * instance, the MGI id MGI:101757 corresponding to the webpage - * {@code http://www.informatics.jax.org/marker/MGI:101757} describes the - * gene Cfl1 (cofilin 1, non-muscle) and the phenotypic features associated - * with the several mouse models that have been made to investigate this - * gene. - */ - private final String mgiId; - /** - * The gene symbol corresponding to the mouse gene, e.g., Cfl1. - */ - private final String geneSymbol; - - /** - * @param mgiGeneId An ID from Mouse Genome Informatics such as MGI:101757 - * @param geneSymbol The corresponding gene symbol, e.g., Gfl1 - * @param phenodigmScore the phenodigm score for this gene. - */ - public PhivePriorityResult(String mgiGeneId, String geneSymbol, float phenodigmScore) { - this.mgiId = mgiGeneId; - this.geneSymbol = geneSymbol; - this.phenodigmScore = phenodigmScore; - } - - @Override - public PriorityType getPriorityType() { - return PriorityType.PHIVE_PRIORITY; - } - - /** - * @return Relevance score for the current Gene - */ - @Override - public float getScore() { - return phenodigmScore; - } - - /** - * @return HTML code with score the Phenodigm score for the current gene or - * a message if no MGI data was found. - */ - @Override - public String getHTMLCode() { - if (phenodigmScore == PhivePriority.NO_MOUSE_MODEL_SCORE) { - return "

No mouse model for this gene
"; - } else { - String link = makeMgiGeneLink(); - //String s1 = String.format("
  • MGI: %s: Phenodigm score: %.3f%%
",link,100*MGI_Phenodigm); - return String.format("
Mouse phenotype data for %s
", link); - } - } - - /** - * This function creates an HTML anchor link for a MGI id, e.g., for - * MGI:101757 it will create a link to - * {@code http://www.informatics.jax.org/marker/MGI:101757}. - */ - private String makeMgiGeneLink() { - String url = String.format("http://www.informatics.jax.org/marker/%s", mgiId); - String anchor = String.format("%s", url, geneSymbol); - return anchor; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/Prioritiser.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/Prioritiser.java deleted file mode 100644 index d1cbc0bc7..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/Prioritiser.java +++ /dev/null @@ -1,48 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.analysis.AnalysisStep; -import java.util.List; - -import de.charite.compbio.exomiser.core.model.Gene; - -/** - * This interface is implemented by classes that perform prioritization of genes - * (i.e., {@link de.charite.compbio.exomiser.exome.Gene Gene} objects). In contrast to the classes - * that implement {@code de.charite.compbio.exomiser.filter.Filter}, which remove variants from - * further consideration (e.g., because they are not predicted to be at all - * pathogenic), FilterType is inteded to work on genes (predict the relevance of - * the gene to the disease, without taking the nature or pathogenicity of any - * variant into account). - *

- * It is expected that the Exomizer will combine the evaluations of the Filter - * and the FilterType evaluations in order to reach a final ranking of the genes - * and variants into candidate disease-causing mutations. - * - * @author Peter N Robinson - * @version 0.13 (13 May, 2013). - * @see de.charite.compbio.exomiser.filter.Filter - */ -public interface Prioritiser extends AnalysisStep { - - /** - * Apply a prioritization algorithm to a list of - * {@link de.charite.compbio.exomiser.exome.Gene Gene} objects. This will have the side effect - * of setting the Class variable {@link de.charite.compbio.exomiser.exome.Gene#priorityScore} - * correspondingly. This, together with the filter scores of the {@link jannovar.exome.Variant Variant} - * {@link de.charite.compbio.exomiser.core.model.Gene Gene} objects can then be used to sort the - * {@link de.charite.compbio.exomiser.core.model.Gene Gene} objects. - *

- * Note that this may result in the removal of - * {@link de.charite.compbio.exomiser.exome.Gene Gene} objects if they do not conform to the - * Prioritizer. - * - * @param genes - */ - public void prioritizeGenes(List genes); - - /** - * @return an enum constant representing the type of the implementing class. - */ - public PriorityType getPriorityType(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserRunner.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserRunner.java deleted file mode 100644 index 6e43dc241..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserRunner.java +++ /dev/null @@ -1,59 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.Gene; -import java.util.ArrayList; -import java.util.List; -import java.util.stream.Collectors; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -@Deprecated -public class PrioritiserRunner { - - private static final Logger logger = LoggerFactory.getLogger(PrioritiserRunner.class); - - /** - * Applies the prioritisation criteria from the prioritisers to only those - * genes which have passed the filtering steps. If no filtering has been - * applied this will be equivalent to simply prioritising all genes. - * - * @param prioritisers - * @param genes - * @return - */ - public List prioritiseFilteredGenes(List prioritisers, List genes) { - List filteredGenes = genes.stream().filter(Gene::passedFilters).collect(Collectors.toList()); - logger.info("{} of {} genes passed all filters", filteredGenes.size(), genes.size()); - return prioritiseGenes(prioritisers, filteredGenes); - } - - /** - * Applies the prioritisation criteria from the prioritisers to all - * genes irrespective of whether they have been filtered or not. - * - * @param prioritisers - * @param genes - * @return - */ - public List prioritiseGenes(List prioritisers, List genes) { - logger.info("Running prioritisers over {} genes", genes.size()); - prioritisers.forEach(prioritiser -> run(prioritiser, genes)); - logger.info("Done prioritising genes"); - return genes; - } - - public void run(Prioritiser prioritiser, List genes) { - prioritiser.prioritizeGenes(genes); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserSettings.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserSettings.java deleted file mode 100644 index bdd8d0c31..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserSettings.java +++ /dev/null @@ -1,28 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.List; - -/** - * Settings parameters required by the prioritisers. - * - * @author Jules Jacobsen - */ -public interface PrioritiserSettings { - - public PriorityType getPrioritiserType(); - - public String getDiseaseId(); - - public String getCandidateGene(); - - public List getHpoIds(); - - public List getSeedGeneList(); - - public String getExomiser2Params(); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserSettingsImpl.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserSettingsImpl.java deleted file mode 100644 index 499ff6b14..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserSettingsImpl.java +++ /dev/null @@ -1,102 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.ArrayList; -import java.util.List; - -public class PrioritiserSettingsImpl implements PrioritiserSettings { - - private final PriorityType priorityType; - private final String diseaseId; - private final String candidateGeneSymbol; - private final String exomiser2Params; - private final List hpoIds; - private final List seedGenes; - - public static class PrioritiserSettingsBuilder { - - private PriorityType priorityType = PriorityType.NONE; - private String diseaseId = ""; - private String candidateGeneSymbol = ""; - private String exomiser2Params = ""; - private List hpoIds = new ArrayList<>(); - private List seedGenes = new ArrayList<>(); - - public PrioritiserSettingsBuilder usePrioritiser(PriorityType priorityType) { - this.priorityType = priorityType; - return this; - } - - public PrioritiserSettingsBuilder hpoIdList(List hpoIds) { - this.hpoIds = hpoIds; - return this; - } - - public PrioritiserSettingsBuilder diseaseId(String diseaseId) { - this.diseaseId = diseaseId; - return this; - } - - public PrioritiserSettingsBuilder candidateGene(String candidateGeneSymbol) { - this.candidateGeneSymbol = candidateGeneSymbol; - return this; - } - - public PrioritiserSettingsBuilder exomiser2Params(String exomiser2Params) { - this.exomiser2Params = exomiser2Params; - return this; - } - - public PrioritiserSettingsBuilder seedGeneList(List seedGenes) { - this.seedGenes = seedGenes; - return this; - } - - public PrioritiserSettingsImpl build() { - return new PrioritiserSettingsImpl(this); - } - } - - private PrioritiserSettingsImpl(PrioritiserSettingsBuilder builder) { - priorityType = builder.priorityType; - diseaseId = builder.diseaseId; - candidateGeneSymbol = builder.candidateGeneSymbol; - exomiser2Params = builder.exomiser2Params; - hpoIds = builder.hpoIds; - seedGenes = builder.seedGenes; - } - - @Override - public PriorityType getPrioritiserType() { - return priorityType; - } - - @Override - public String getDiseaseId() { - return diseaseId; - } - - @Override - public String getCandidateGene() { - return candidateGeneSymbol; - } - - @Override - public List getHpoIds() { - return hpoIds; - } - - @Override - public List getSeedGeneList() { - return seedGenes; - } - - @Override - public String getExomiser2Params() { - return exomiser2Params; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactory.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactory.java deleted file mode 100644 index 1d6154e6a..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactory.java +++ /dev/null @@ -1,36 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.List; - -/** - * - * @author Jules Jacobsen - */ -public interface PriorityFactory { - - /** - * Returns a Prioritiser of the given type, ready to run according to the - * settings provided. Will return a non-functional prioritiser in cases - * where the type is not recognised. - * - * @param priorityType - * @param settings - * @return - */ - public Prioritiser makePrioritiser(PriorityType priorityType, PrioritiserSettings settings); - - public OMIMPriority makeOmimPrioritiser(); - - public PhenixPriority makePhenixPrioritiser(List hpoIds); - - public PhivePriority makePhivePrioritiser(List hpoIds); - - public ExomeWalkerPriority makeExomeWalkerPrioritiser(List entrezSeedGenes); - - public HiPhivePriority makeHiPhivePrioritiser(List hpoIds, HiPhiveOptions hiPhiveOptions); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryImpl.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryImpl.java deleted file mode 100644 index 333884a86..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryImpl.java +++ /dev/null @@ -1,128 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.prioritisers.util.DataMatrix; -import de.charite.compbio.exomiser.core.prioritisers.util.PriorityService; -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.Collections; -import java.util.HashSet; -import java.util.List; -import java.util.Set; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Lazy; -import org.springframework.stereotype.Component; - -/** - * Factory class for handling creation of FilterType objects. - * - * @author Jules Jacobsen - */ -@Component -public class PriorityFactoryImpl implements PriorityFactory { - - private static final Logger logger = LoggerFactory.getLogger(PriorityFactoryImpl.class); - - @Autowired - private PriorityService priorityService; - @Autowired - private DataSource dataSource; - @Autowired - @Lazy - private DataMatrix randomWalkMatrix; - @Autowired - private Path phenixDataDirectory; - - /** - * Returns a Prioritiser of the given type, ready to run according to the - * settings provided. Will return a non-functional prioritiser in cases - * where the type is not recognised. - * - * @param priorityType - * @param settings - * @return - */ - @Override - //TODO: this should probably move into the Exomiser class now - it's only used there. - public Prioritiser makePrioritiser(PriorityType priorityType, PrioritiserSettings settings) { - //These should form the PrioritySettings interface - List hpoIds = settings.getHpoIds(); - List entrezSeedGenes = settings.getSeedGeneList(); - String diseaseId = settings.getDiseaseId(); - String candidateGene = settings.getCandidateGene(); - String hiPhiveParams = settings.getExomiser2Params(); - - if (hpoIds.isEmpty()) { - logger.info("HPO terms have not been specified. Setting HPO IDs using disease annotations for {}", diseaseId); - hpoIds = getHpoIdsForDiseaseId(diseaseId); - } - - switch (priorityType) { - case OMIM_PRIORITY: - return makeOmimPrioritiser(); - case PHENIX_PRIORITY: - return makePhenixPrioritiser(hpoIds); - case HIPHIVE_PRIORITY: - return makeHiPhivePrioritiser(hpoIds, new HiPhiveOptions(diseaseId, candidateGene, hiPhiveParams)); - case PHIVE_PRIORITY: - return makePhivePrioritiser(hpoIds); - case EXOMEWALKER_PRIORITY: - return makeExomeWalkerPrioritiser(entrezSeedGenes); - case NONE: - return new NoneTypePrioritiser(); - default: - logger.warn("Prioritiser: '{}' not supported. Returning '{}' type", priorityType, PriorityType.NONE); - return new NoneTypePrioritiser(); - } - - } - - private List getHpoIdsForDiseaseId(String diseaseId) { - if (diseaseId == null || diseaseId.isEmpty()) { - return new ArrayList<>(); - } - return priorityService.getHpoIdsForDiseaseId(diseaseId); - } - - @Override - public OMIMPriority makeOmimPrioritiser() { - OMIMPriority priority = new OMIMPriority(); - priority.setDataSource(dataSource); - return priority; - } - - @Override - public PhenixPriority makePhenixPrioritiser(List hpoIds) { - boolean symmetric = false; - PhenixPriority priority = new PhenixPriority(phenixDataDirectory.toString(), hpoIds, symmetric); - return priority; - } - - @Override - public PhivePriority makePhivePrioritiser(List hpoIds) { - PhivePriority priority = new PhivePriority(hpoIds); - priority.setDataSource(dataSource); - return priority; - } - - @Override - public ExomeWalkerPriority makeExomeWalkerPrioritiser(List entrezSeedGenes) { - ExomeWalkerPriority priority = new ExomeWalkerPriority(randomWalkMatrix, entrezSeedGenes); - return priority; - } - - @Override - public HiPhivePriority makeHiPhivePrioritiser(List hpoIds, HiPhiveOptions hiPhiveOptions) { - HiPhivePriority priority = new HiPhivePriority(hpoIds, hiPhiveOptions, randomWalkMatrix); - priority.setPriorityService(priorityService); - return priority; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityResult.java deleted file mode 100644 index 98c51581f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityResult.java +++ /dev/null @@ -1,29 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -/** - * Prioritization of Genes results in a relevance score for each tested - * {@link exomizer.exome.Gene Gene} object. The methods may also annotate the - genes with data (e.g., a link to OMIM or a link to Phenodigm or uberpheno - data. Each prioritization is expected to result on an object of a class that - implements PriorityResult - * - * @author Peter N Robinson - */ -public interface PriorityResult { - - /** - * @return return a float representation of the filter result [0..1]. If the - * result is boolean, return 0.0 for false and 1.0 for true - */ - public float getScore(); - - public PriorityType getPriorityType(); - - /** - * @return HTML code representing this prioritization/relevance score - * @deprecated this should be handled by the writers - */ - @Deprecated - public String getHTMLCode(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityType.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityType.java deleted file mode 100644 index fcd1aaf3b..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/PriorityType.java +++ /dev/null @@ -1,37 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -/** - * - * @author Jules Jacobsen - */ -public enum PriorityType { - - //Prioritises against PPI-RandomWalk-proximity and dynamic human, mouse and fish phenotypes - HIPHIVE_PRIORITY(ScoringMode.RAW_SCORE), - //Prioritises against PPI-RandomWalk-proximity A.K.A "GeneWanderer" - EXOMEWALKER_PRIORITY(ScoringMode.RAW_SCORE), - //Prioritises against human phenotypes A.K.A. "HPO Phenomizer prioritizer" - PHENIX_PRIORITY(ScoringMode.RAW_SCORE), - //Prioritises against human-mouse phenotype similarities - PHIVE_PRIORITY(ScoringMode.RAW_SCORE), - //Prioritises against OMIM data - OMIM_PRIORITY(ScoringMode.RAW_SCORE), - //Prioritises against phenotype data (Uberpheno) A.K.A. "Uberpheno semantic similarity filter" - UBERPHENO_PRIORITY(ScoringMode.RAW_SCORE), - //None - for when you don't want to run any prioritisation - NONE(ScoringMode.RAW_SCORE); - - /** - * The string representation of the FilterType as used when specifying the type on the command-line. - */ - private final ScoringMode scoringMode; - - private PriorityType(ScoringMode scoringMode) { - this.scoringMode = scoringMode; - } - - public ScoringMode getScoringMode() { - return scoringMode; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ScoringMode.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ScoringMode.java deleted file mode 100644 index 5e79fbcf1..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/ScoringMode.java +++ /dev/null @@ -1,16 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.prioritisers; - -/** - * Enum used to describe how the genes should be sorted after they have been prioritised. - * The results of different prioritisers require different sorting. - * @author Jules Jacobsen - */ -public enum ScoringMode { - RANK_BASED, RAW_SCORE; -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/UberphenoPriority.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/UberphenoPriority.java deleted file mode 100644 index 34ef53f28..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/UberphenoPriority.java +++ /dev/null @@ -1,258 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.prioritisers.util.UberphenoIO; -import java.io.File; -import java.util.List; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.Set; - -import ontologizer.go.Ontology; -import ontologizer.go.Term; -import similarity.concepts.ResnikSimilarity; -import similarity.objects.InformationContentObjectSimilarity; -import sonumina.math.graph.SlimDirectedGraphView; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.prioritisers.util.UberphenoAnnotationContainer; -import java.util.Map; -import java.util.Objects; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Filter variants according to the phenotypic similarity of the specified - * disease to mouse models disrupting the same gene. We use semantic similarity - * calculations in the uberpheno. - * - * The files required for the constructor of this filter should be downloaded - * from: {@code http://purl.obolibrary.org/obo/hp/uberpheno/} - * (HSgenes_crossSpeciesPhenoAnnotation.txt, crossSpeciesPheno.obo) - * - * @see Uberpheno Hudson - * page - * @see F1000 research - * article - * @author Sebastian Koehler - * @version 0.05 (April 28, 2013) - */ -public class UberphenoPriority implements Prioritiser { - - private static final Logger logger = LoggerFactory.getLogger(UberphenoPriority.class); - - /** - * The Uberpheno as Ontologizer-Ontology object - */ - private Ontology uberpheno; - - /** - * The Uberpheno as SlimDirectedGraph (fast access to ancestor etc.) - */ - private SlimDirectedGraphView uberphenoSlim; - - /** - * A list of error-messages - */ - private List errorMessages = new ArrayList<>(); - - /** - * A list of messages that can be used to create a display in a HTML page or - * elsewhere. - */ - private List messages = new ArrayList<>(); - - /** - * Keeps track of the number of variants for which data was available in - * Uberpheno annotation. - */ - private int found_annotation_in_uberpheno; - - /** - * Modificiation date of the Uberpheno obo file - */ - private long uberphenoOboFileLastModified = -1; - - /** - * Modification date of the annotation file - */ - private long uberphenoAnnotationFileLastModified = -1; - - /** - * Contains the associations between genes and terms from the uberpheno - */ - private UberphenoAnnotationContainer uberphenoAnnotationContainer; - - /** - * The semantic similarity measure used to calculate phenotypic similarity - */ - private InformationContentObjectSimilarity similarityMeasure; - - /** - * The HPO-terms associated with the current disease - */ - private List annotationsOfDisease; - - /** - * Assignment of an IC to each term in the Uberpheno - */ - private Map uberphenoterm2informationContent; - - /** - * Create a new instance of the UberphenoFilter. - * - * @param uberphenoOboFile The uberpheno obo-file obtained from - * {@code http://purl.obolibrary.org/obo/hp/uberpheno/} - * @param uberphenoAnnotationFile The annotation file obtained from - * {@code http://purl.obolibrary.org/obo/hp/uberpheno/} - * @param disease The disease ID. At the moment only OMIM-IDs allowed. - * @throws ExomizerInitializationException - * @see Uberpheno - * Hudson page - */ - public UberphenoPriority(String uberphenoOboFile, String uberphenoAnnotationFile, String disease) { - - /* IO responsible for Uberpheno files */ - UberphenoIO uphenoIO = new UberphenoIO(); - - boolean reparsed = false; /* will be set to true if we have reparsed at least one of the obo- or annotation-file. */ - - /* check if we have to parse the obo-file */ - File uberphenoOboFileObj = new File(uberphenoOboFile); - if (uberphenoOboFileObj.lastModified() != uberphenoOboFileLastModified) { - uberpheno = uphenoIO.parseUberpheno(uberphenoOboFile); - uberphenoSlim = uberpheno.getSlimGraphView(); - uberphenoOboFileLastModified = uberphenoOboFileObj.lastModified(); - reparsed = true; - } - - /* check if we have to parse the annotation-file */ - File uberphenoAnnotationFileObj = new File(uberphenoAnnotationFile); - if (uberphenoAnnotationFileObj.lastModified() != uberphenoAnnotationFileLastModified) { - uberphenoAnnotationContainer = uphenoIO.createUberphenoAnnotationFromFile(uberphenoAnnotationFile, uberpheno, uberphenoSlim); - uberphenoAnnotationFileLastModified = uberphenoAnnotationFileObj.lastModified(); - reparsed = true; - } - - /* get the information-content for each term in uberpheno */ - if (reparsed) { - uberphenoterm2informationContent = uberphenoAnnotationContainer.calculateInformationContentUberpheno(uberpheno, uberphenoSlim); - - /* Similarity calculation ... TODO: parameter-based choice of similarity measure */ - ResnikSimilarity resnik = new ResnikSimilarity(uberpheno, (HashMap) uberphenoterm2informationContent); - similarityMeasure = new InformationContentObjectSimilarity(resnik, false, false); - } - - /* - * Take the given disease ID and find the associated HPO-terms for that disease - * by converting it to an OMIM-ID-Integer - */ - int omimId = 0; - try { - omimId = Integer.parseInt(disease); - } catch (NumberFormatException e) { - logger.error("UberphenoFilter: Could not parse OMIM-id (int) from {}", disease); - } - - /* Store the annotations of the given disease. This is used as query */ - Set annotationsOfCurrentDiseaseHs = uberphenoAnnotationContainer.getAnnotationsOfOmim(omimId); - annotationsOfDisease = new ArrayList(annotationsOfCurrentDiseaseHs); - - /* some logging stuff */ - this.errorMessages = new ArrayList(); - this.messages = new ArrayList(); - } - - /** - * Flag to output results of filtering against Uberpheno data. - */ - @Override - public PriorityType getPriorityType() { - return PriorityType.UBERPHENO_PRIORITY; - } - - /** - * @return list of messages representing process, result, and if any, errors - * of score filtering. - */ - public List getMessages() { - if (this.errorMessages.size() > 0) { - for (String s : errorMessages) { - this.messages.add("Error: " + s); - } - } - return this.messages; - } - - /** - * Prioritize a list of candidate {@link exomizer.exome.Gene Gene} objects - * (the candidate genes have rare, potentially pathogenic variants). - * - * @param gene_list List of candidate genes. - * @see exomizer.filter.Filter#filter_list_of_variants(java.util.ArrayList) - */ - @Override - public void prioritizeGenes(List gene_list) { - this.found_annotation_in_uberpheno = 0; - int analysedGenes = gene_list.size(); - - for (Gene gene : gene_list) { - try { - UberphenoPriorityResult uberphenoRelScore = scoreVariantUberpheno(gene); - gene.addPriorityResult(uberphenoRelScore); - } catch (Exception e) { - errorMessages.add(e.toString()); - } - } - - String s = String.format("Data investigated in Uberpheno for %d genes (%.1f%%)", analysedGenes); - messages.add(s); - } - - /** - * @param g A {@link exomizer.exome.Gene Gene} whose score is to be - * determined. - */ - private UberphenoPriorityResult scoreVariantUberpheno(Gene g) { - - int entrezGeneId = g.getEntrezGeneID(); - Set terms = uberphenoAnnotationContainer.getAnnotationsOfGene(entrezGeneId); - if (terms == null || terms.size() < 1) { - return new UberphenoPriorityResult(-10.0f); - } - List termsAl = new ArrayList<>(terms); - double similarityScore = similarityMeasure.computeObjectSimilarity((ArrayList) annotationsOfDisease, (ArrayList) termsAl); - return new UberphenoPriorityResult(similarityScore); - } - - @Override - public int hashCode() { - int hash = 7; - hash = 29 * hash + Objects.hashCode(this.uberpheno); - hash = 29 * hash + Objects.hashCode(this.annotationsOfDisease); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final UberphenoPriority other = (UberphenoPriority) obj; - if (!Objects.equals(this.uberpheno, other.uberpheno)) { - return false; - } - if (!Objects.equals(this.annotationsOfDisease, other.annotationsOfDisease)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "UberphenoPriority{" + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/UberphenoPriorityResult.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/UberphenoPriorityResult.java deleted file mode 100644 index 07afb65f9..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/UberphenoPriorityResult.java +++ /dev/null @@ -1,46 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.ArrayList; -import java.util.List; - -/** - * Filter Variants on the basis of Uberpheno semantic similarity measure between - * the HPO clinical phenotypes associated with the disease being sequenced and - * MP annotated MGI mouse models and/or Zebrafish phenotypes. - * - * @author Sebastian Koehler - * @version 0.02 (April 2, 2013). - */ -public class UberphenoPriorityResult implements PriorityResult { - - private double uberphenoScore; - - /** - * @param uberphenoSemSimScore - */ - public UberphenoPriorityResult(double uberphenoSemSimScore) { - this.uberphenoScore = uberphenoSemSimScore; - } - - @Override - public PriorityType getPriorityType() { - return PriorityType.UBERPHENO_PRIORITY; - } - - /* (non-Javadoc) - * @see exomizer.priority.Priority#getScore - */ - @Override - public float getScore() { - return (float) uberphenoScore; - } - - /* (non-Javadoc) - * @see exomizer.filter.Triage#getHTMLCode() - */ - @Override - public String getHTMLCode() { - return ""; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/reference/Network.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/reference/Network.java deleted file mode 100644 index d24375c58..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/reference/Network.java +++ /dev/null @@ -1,9 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers.reference; - -import java.util.List; - -public interface Network { - - public List evalCandidateGene(Integer entrezID); - -} \ No newline at end of file diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/reference/STRINGNetwork.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/reference/STRINGNetwork.java deleted file mode 100644 index d082c9809..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/reference/STRINGNetwork.java +++ /dev/null @@ -1,261 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers.reference; - -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * This class encapsulates a network derived from the STRING protein-protein - * interaction network. It is designed to be initialized by the seed genes - * chosen by the user of ExomeWalker. It then goes and identifies the degree one - * neighbors of these genes. It can then be used to quickly answer the question - * whether a candidate gene is related to the seed genes or any of their - * neighbors. This class gets its information from the Exomiser database and - * expects to find the string table. - * - * @see exomizer.io.STRINGParser - * @author Peter Robinson - * @version 0.03 (10 February, 2014) - */ -public class STRINGNetwork implements Network { - - private final Logger logger = LoggerFactory.getLogger(STRINGNetwork.class); - /** - * Handle to the SQL database (postgreSQL) - */ - private Connection connection = null; - /** - * This hashmap contains as Keys Entrez Gene ids for genes; The - * corresponding values are lists of String representing interaction paths - * that end at the gene and start at one of the seed genes. The paths can be - * one or two interactions in length (first- or second-degree interactions). - */ - private Map> interactionPath = null; - /** - * A set of the entrez gene ids of the seed genes. We use this to avoid - * entering paths that cycle back to one of the seed genes from the first - * level paths (it is OK if a candidate gene is also a seed gene, then we - * show these paths). - */ - private Set seedGeneIdSet = null; - - /** - * @param c A connection to the postgreSQL Exomiser database. - * @param seedGeneList A comma-separated list of Entrez Gene ids - * representing the seed genes chosen by the user (e.g., all genes belonging - * to a phenotypic family). - */ - public STRINGNetwork(Connection c, String seedGeneList) { - this.connection = c; - this.interactionPath = new HashMap<>(); - this.seedGeneIdSet = new HashSet<>(); - logger.info("initialising seed genes"); - initializeSeedGenesAndNeighbors(seedGeneList); - } - - /** - * This method searches in the table entrez2sym for the Gene Symbol - * corresponding to a given entrez gene id. For instance, the id 2200 - * corresponds to the symbol FBN1. - * - * @param entrezID an NCBI Entrez Gene ID for a gene - * @return The gene symbol corresponding to the entrez gene or null if no - * symbol can be found - */ - private String getSymbol(Integer entrezID) { - String query = "SELECT symbol FROM entrez2sym WHERE entrezID = ?;"; - try { - PreparedStatement ps = this.connection.prepareStatement(query); - ps.setInt(1, entrezID); - ResultSet rs = ps.executeQuery(); - if (rs.next()) { - String symbol = rs.getString(1); - return symbol; - } else { - return null; - } - } catch (SQLException e) { - logger.error("STRINGNetwork, could not retrieve gene symbol", e); - } - return null; - } - - /** - * Returns an array list with all first and second degree paths to the gene - * represented by entrezID. If there are no interactions, it returns an - * empty arraylist. - * - * @param entrezID an NCBI Entrez Gene ID for a gene (one of the candidate - * genes from the exome) - * @return List of first- and second degree interaction paths connection a - * seed gene to the candidate gene. - */ - public List evalCandidateGene(Integer entrezID) { - if (this.interactionPath.containsKey(entrezID)) { - return this.interactionPath.get(entrezID); - } else { - return new ArrayList<>(); - } - } - - /** - * Adds a one- or two-interaction path to {@link #interactionPath}. The key - * is the gene at the end of the chain, i.e., on the other side of the path - * from a seed gene. - * - * @param id Entrez ID of a gene interacting (path: 1 or 2) with a seed gene - * @param path String representation of path, e.g. ABC1 <-> DEF2 <->GHI3. - */ - private void addPathToMap(Integer id, String path) { - if (!this.interactionPath.containsKey(id)) { - this.interactionPath.put(id, new ArrayList()); - } - List lst = this.interactionPath.get(id); - lst.add(path); - } - - /** - * This method is called after a length-one path has been found from a gene - * that is connected to a seed gene. The method adds all direct interaction - * partners, so that in the end we have paths of length two from the seed - * genes. For example, say we have a seed gene ABC1. Then we might use - * {@link #addSinglePath} to creat ethe path ABC1 <-> DEF2. - * This method will extend that path to ABC1 <-> DEF2 <-> GHI3. - * - * @param neighborID Entrez Gene id of a gene that is neighbor to a seed - * gene. - * @param seedID the seed gene that neighborIDinteracts with - * @param pathToDate String representation of the degree-one path coming - * from seedID, e.g., ABC1 <-> DEF2. - */ - private void addDoublePath(Integer neighborID, Integer seedID, String pathToDate) { - String query = "SELECT entrezID,symbol FROM entrez2sym,string WHERE " - + "(entrezID = entreza AND entrezb=?) OR (entrezID = entrezb AND entreza=?);"; - try { - PreparedStatement ps = this.connection.prepareStatement(query); - ps.setInt(1, neighborID); - ps.setInt(2, neighborID); - ResultSet rs = ps.executeQuery(); - while (rs.next()) { - int id = rs.getInt(1); - if (id == seedID) { - continue; /* this is a self-loop from a seed gene to another gene and back. - We can skip it since we do not want to display this on the - website. */ - - } - String symbol = rs.getString(2); - if (symbol == null || symbol.length() == 0) { - logger.error("Double symbol null in addDoublePath for id {}", id); - continue; - } - String path = String.format("%s⇔%s", pathToDate, symbol); - addPathToMap(id, path); - } - } catch (SQLException e) { - logger.error("SQLException {}", e.getMessage()); - } - } - - /** - * This method is called to add interaction paths from the seed genes - * themselves. - * - * @param seedID NCBI entrez gene id of a seed gene. - * @param seedSymbol The gene symbol corresponding to the entrezID. - */ - private void addSinglePath(Integer seedID, String seedSymbol) { - // H2 seemed to have an issue with doing this query with an OR so separated into 2 queries -// String query = "SELECT entrezID,symbol FROM entrez2sym,string WHERE "+ -// "(entrezID = entreza AND entrezb=?) OR (entrezID = entrezb AND entreza=?);"; - String query1 = "SELECT entrezID,symbol FROM entrez2sym,string WHERE " - + "(entrezID = entreza AND entrezb=?);"; - try { - PreparedStatement ps = this.connection.prepareStatement(query1); - ps.setInt(1, seedID); - ps.setInt(2, seedID); - ResultSet rs = ps.executeQuery(); - while (rs.next()) { - int id = rs.getInt(1); - String symbol = rs.getString(2); - if (symbol == null) { - logger.error("id {} symbol is null", id); - continue; - } - String path = String.format("%s⇔%s", seedSymbol, symbol); - addPathToMap(id, path); - if (this.seedGeneIdSet.contains(id)) { - continue; /* Do not add double path if the first node also belongs to the seed family. */ - - } - addDoublePath(id, seedID, path); /* - * id is the Entrez Gene id of the gene that interacts with the - * seed gene (seedID). - */ - - } - } catch (SQLException e) { - logger.error("", e); - } - String query2 = "SELECT entrezID,symbol FROM entrez2sym,string WHERE " - + "(entrezID = entrezb AND entreza=?);"; - try { - PreparedStatement ps = this.connection.prepareStatement(query2); - ps.setInt(1, seedID); - ps.setInt(2, seedID); - ResultSet rs = ps.executeQuery(); - while (rs.next()) { - int id = rs.getInt(1); - String symbol = rs.getString(2); - if (symbol == null) { - logger.error("id {} symbol is null", id); - continue; - } - String path = String.format("%s⇔%s", seedSymbol, symbol); - addPathToMap(id, path); - if (this.seedGeneIdSet.contains(id)) { - continue; /* Do not add double path if the first node also belongs to the seed family. */ - - } - addDoublePath(id, seedID, path); /* - * id is the Entrez Gene id of the gene that interacts with the - * seed gene (seedID). - */ - } - } catch (SQLException e) { - logger.error("", e); - } - } - - /** - * This method takes a comma separated list of entrez gene ids representing - * the seed gene (e.g., all genes from some OMIM Phenotypic Series), and - * finds all paths of lengths one and two that emanate from them. - * - * @param seedGenes A comma-separated list of EntrezGene ids - */ - private void initializeSeedGenesAndNeighbors(String seedGenes) { - String[] seedGeneValues = seedGenes.split(","); - for (String geneId : seedGeneValues) { - Integer entrezID = Integer.parseInt(geneId.trim()); - logger.info("DOING {}", entrezID); - this.seedGeneIdSet.add(entrezID); - String symbol = getSymbol(entrezID); - logger.info("GOT SYMBOL {}", symbol); - if (symbol == null) { - continue; - } - addSinglePath(entrezID, symbol); - logger.info("FINISHED"); - } - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/DataMatrix.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/DataMatrix.java deleted file mode 100644 index 72ca1782d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/DataMatrix.java +++ /dev/null @@ -1,210 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.File; -import java.io.FileInputStream; -import java.io.FileWriter; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; -import java.util.HashMap; -import java.util.Map; -import java.util.Map.Entry; -import java.util.regex.Pattern; -import java.util.zip.GZIPInputStream; -import org.jblas.FloatMatrix; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Contains the random walk relationships and the entrez-id to index relations. - * - * @author sebastiankohler - * @author Jules Jacobsen - */ -public class DataMatrix { - - private static final Logger logger = LoggerFactory.getLogger(DataMatrix.class); - - private final Map rowToEntrezIdIndex = new HashMap<>(); - private Map entrezIdToRowIndex = new HashMap<>(); - private FloatMatrix matrix; - private String name = ""; - private static final Pattern SPLIT_PATTERN = Pattern.compile("\t"); - - public DataMatrix(FloatMatrix matrix, Map entrezIdToRowIndex) { - this.matrix = matrix; - this.entrezIdToRowIndex = entrezIdToRowIndex; - for (Entry entrezIdToRow : entrezIdToRowIndex.entrySet()) { - rowToEntrezIdIndex.put(entrezIdToRow.getValue(), entrezIdToRow.getKey()); - } - } - - public DataMatrix(String matrixFileZip, String entrezId2indexFileZip, boolean shouldUseExponent) { - - setUpIndexAndCreateEmptyMatrix(entrezId2indexFileZip); - - fillMatrixfromFile(matrixFileZip, shouldUseExponent); - - name = matrixFileZip; - } - - private void setUpIndexAndCreateEmptyMatrix(String object2idxFileZip) { - File indexFile = new File(object2idxFileZip); - try (BufferedReader indexReader = gzippedFileBufferedReader(indexFile)) { - String line; - while ((line = indexReader.readLine()) != null) { - addLineDataToIndexes(line); - } - } catch (IOException e) { - throw new RuntimeException(e); - } - setUpMatrix(); - } - - private void addLineDataToIndexes(String line) { - String[] split = SPLIT_PATTERN.split(line); - int objectId = Integer.parseInt(split[0]); - int idx = Integer.parseInt(split[1]); - rowToEntrezIdIndex.put(idx, objectId); - entrezIdToRowIndex.put(objectId, idx); - } - - private void setUpMatrix() { - int matrixSize = rowToEntrezIdIndex.size(); - matrix = new FloatMatrix(matrixSize, matrixSize); - } - - private void fillMatrixfromFile(String matrixFileZip, boolean shouldUseExponent) { - File matrixFile = new File(matrixFileZip); - try (BufferedReader in = gzippedFileBufferedReader(matrixFile)) { - int i = 0; - String line; - while ((line = in.readLine()) != null) { - //just a nicety to stop you wondering if anything is going on - this stage takes a minute or two - logLineNumberIfMultipleOf500(i); - addLineDataToMatrixRow(line, i, shouldUseExponent); - i++; - } - } catch (IOException e) { - throw new RuntimeException(e); - } - } - - private void logLineNumberIfMultipleOf500(int i) { - if (i % 500 == 0) { - logger.info("reading line {}", i); - } - } - - private void addLineDataToMatrixRow(String line, int i, boolean shouldUseExponent) { - String[] row = SPLIT_PATTERN.split(line); - int matrixSize = matrix.rows; - for (int j = 0; j < matrixSize; j++) { - float entry = Float.parseFloat(row[j]); - if (shouldUseExponent) { - entry = (float) Math.exp(entry); - } - matrix.put(i, j, entry); - } - } - - private BufferedReader gzippedFileBufferedReader(File file) throws IOException { - // if the gz-file exists we try to create a BufferedReader for this file - BufferedReader bufferedReader; - int bufferSizeInBytes = 2048; - if (file.exists()) { - InputStream inputStream = new GZIPInputStream(new FileInputStream(file), bufferSizeInBytes); - bufferedReader = new BufferedReader(new InputStreamReader(inputStream)); - } else { - throw new RuntimeException("FATAL: file not found " + file.getName()); - } - return bufferedReader; - } - - public Map getEntrezIdToRowIndex() { - return entrezIdToRowIndex; - } - - public FloatMatrix getMatrix() { - return matrix; - } - - public String getName() { - return name; - } - - public boolean containsGene(Integer entrezGeneId) { - return entrezIdToRowIndex.containsKey(entrezGeneId); - } - - public Integer getRowIndexForGene(int entrezGeneId) { - return entrezIdToRowIndex.get(entrezGeneId); - } - - public FloatMatrix getColumnMatrixForGene(int entrezGeneId) { - Integer rowIndex = entrezIdToRowIndex.get(entrezGeneId); - return matrix.getColumn(rowIndex); - } - - public static void writeMatrix(FloatMatrix matrix, String file, Map id2index, boolean doLogarithm) { - try ( - BufferedWriter outMatrix = new BufferedWriter(new FileWriter(file)); - BufferedWriter outIndexMap = new BufferedWriter(new FileWriter(file + "_id2index"))) { - - for (String entrezId : id2index.keySet()) { - outIndexMap.write(entrezId + "\t" + id2index.get(entrezId) + "\n"); - } - - for (int i = 0; i < matrix.rows; i++) { - for (int j = 0; j < matrix.columns; j++) { - if (j > 0) { - outMatrix.write("\t"); - } - if (doLogarithm) { - outMatrix.write(String.format("%.5f", Math.log(matrix.get(i, j)))); - } else { - outMatrix.write(String.format("%.5f", matrix.get(i, j))); - } - } - outMatrix.write("\n"); - } - - } catch (IOException e) { - logger.info("Unable to write DataMatrix to file {}", file); - } - } - - public static void writeMatrixInclHeaderAndRowIDs(FloatMatrix matrix, String file, Map id2index, boolean doLogarithm) { - try (BufferedWriter outMatrix = new BufferedWriter(new FileWriter(file))) { - Map index2id = new HashMap<>(); - for (String s : id2index.keySet()) { - int idx = id2index.get(s); - index2id.put(idx, s); - } - outMatrix.write("Key"); - for (int i = 0; i < id2index.size(); i++) { - outMatrix.write(";" + index2id.get(i)); - } - outMatrix.write("\n"); - - for (int i = 0; i < matrix.rows; i++) { - outMatrix.write(index2id.get(i)); - for (int j = 0; j < matrix.columns; j++) { - outMatrix.write(";"); - if (doLogarithm) { - outMatrix.write(String.format("%.5f", Math.log(matrix.get(i, j)))); - } else { - outMatrix.write(String.format("%.10f", matrix.get(i, j))); - } - } - - outMatrix.write("\n"); - } - } catch (IOException e) { - logger.info("Unable to write DataMatrix with headers to file {}", file); - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ModelService.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ModelService.java deleted file mode 100644 index bad250616..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ModelService.java +++ /dev/null @@ -1,27 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import de.charite.compbio.exomiser.core.model.DiseaseModel; -import de.charite.compbio.exomiser.core.model.GeneModel; -import de.charite.compbio.exomiser.core.model.Model; -import java.util.List; - -/** - * Interface for Services retrieving model data. - * - * @author Jules Jacobsen - */ -public interface ModelService { - - public List getHumanDiseaseModels(); - - public List getMouseGeneModels(); - - public List getFishGeneModels(); - - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ModelServiceImpl.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ModelServiceImpl.java deleted file mode 100644 index e9bd8d7af..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ModelServiceImpl.java +++ /dev/null @@ -1,124 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import de.charite.compbio.exomiser.core.model.DiseaseModel; -import de.charite.compbio.exomiser.core.model.GeneModel; -import de.charite.compbio.exomiser.core.model.Model; -import de.charite.compbio.exomiser.core.model.Organism; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Service; - -/** - * - * @author Jules Jacobsen - */ -@Service -public class ModelServiceImpl implements ModelService { - - private static final Logger logger = LoggerFactory.getLogger(ModelService.class); - - @Autowired - private DataSource dataSource; - - @Override - public List getHumanDiseaseModels() { - // We only connect to human2mouse_orthologs to get the human_gene_symbol but if there is no orthology mapping we get 0 results and no disease hit at all - this is daft! - // Tried to replace with the below - should be more successful - String modelQuery = "SELECT distinct 'HUMAN' as organism, gene_id as entrez_id, symbol as human_gene_symbol, d.disease_id as disease_id, d.diseasename as disease_term, hp_id as pheno_ids FROM entrez2sym e, disease_hp M, disease d WHERE e.entrezid=d.gene_id and M.disease_id=d.disease_id"; - //String modelQuery = "SELECT 'HUMAN' as organism, gene_id as entrez_id, human_gene_symbol, d.disease_id as disease_id, d.diseasename as disease_term, hp_id as pheno_ids FROM human2mouse_orthologs hm, disease_hp M, disease d WHERE hm.entrez_id=d.gene_id AND M.disease_id=d.disease_id;"; - return runDiseaseModelQuery(modelQuery); - } - - @Override - public List getMouseGeneModels() { - String modelQuery = "SELECT 'MOUSE' as organism, entrez_id, human_gene_symbol, mouse_model_id as model_id, M.mgi_gene_id as model_gene_id, M.mgi_gene_symbol as model_gene_symbol, mp_id as pheno_ids FROM mgi_mp M, human2mouse_orthologs H WHERE M.mgi_gene_id=H.mgi_gene_id and human_gene_symbol != 'null'"; - return runGeneModelQuery(modelQuery); - } - - @Override - public List getFishGeneModels() { - String modelQuery = "SELECT 'FISH' as organism, entrez_id, human_gene_symbol, zfin_model_id as model_id, M.zfin_gene_id as model_gene_id, M.zfin_gene_symbol as model_gene_symbol, zp_id as pheno_ids FROM zfin_zp M, human2fish_orthologs H WHERE M.zfin_gene_id=H.zfin_gene_id and human_gene_symbol != 'null'"; - return runGeneModelQuery(modelQuery); - } - - private List runDiseaseModelQuery(String modelQuery) { - List models = new ArrayList<>(); - try (Connection connection = dataSource.getConnection(); - PreparedStatement findAnnotationStatement = connection.prepareStatement(modelQuery); - ResultSet rs = findAnnotationStatement.executeQuery()) {; - //each row is an animal model or disease, its phenotypes and the known causitive gene of these phenotypes. e.g. - //ORGANISM ENTREZ_ID HUMAN_GENE_SYMBOL DISEASE_ID DISEASE_TERM pheno_ids - //HUMAN 2263 FGFR2 OMIM:101600 Apert syndrome HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304 - //HUMAN 2260 FGFR1 OMIM:101600 Another syn... HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304 - while (rs.next()) { - Organism organism = Organism.HUMAN; - int entrezId = rs.getInt("entrez_id"); - String humanGeneSymbol = rs.getString("human_gene_symbol"); - - String diseaseId = rs.getString("disease_id"); - String diseaseTerm = rs.getString("disease_term"); - - String modelId = diseaseId + "_" + entrezId; - - String phenotypeIdString = rs.getString("pheno_ids"); - String[] mpInitial = phenotypeIdString.split(","); - List phenotypeIds = Arrays.asList(mpInitial); - - DiseaseModel model = new DiseaseModel(modelId, organism, entrezId, humanGeneSymbol, diseaseId, diseaseTerm, phenotypeIds); - models.add(model); - } - } catch (SQLException e) { - logger.error("Problem setting up model query: {}", modelQuery, e); - } - return models; - } - - private List runGeneModelQuery(String modelQuery) { - List models = new ArrayList<>(); - try (Connection connection = dataSource.getConnection(); - PreparedStatement findAnnotationStatement = connection.prepareStatement(modelQuery); - ResultSet rs = findAnnotationStatement.executeQuery()) {; - //each row is an animal model or disease, its phenotypes and the known causitive gene of these phenotypes. e.g. - //ORGANISM MODEL_ID ENTREZ_ID HUMAN_GENE_SYMBOL MODEL_GENE_ID MODEL_GENE_SYMBOL pheno_ids - //MOUSE 115 2263 FGFR2 MGI:95523 Fgfr2 MP:0000031,MP:0000035,MP:0000039,MP:0000081,MP:0000111,MP:0000118,MP:0000440,MP:0000470,MP:0000492,MP:0000551,MP:0000557,MP:0000613,MP:0000629,MP:0000633,MP:0001176,MP:0001181,MP:0001199,MP:0001201,MP:0001218,MP:0001231,MP:0001244,MP:0001265,MP:0001341,MP:0002095,MP:0002428,MP:0002691,MP:0003051,MP:0003124,MP:0003308,MP:0003315,MP:0003703,MP:0003817,MP:0004135,MP:0004310,MP:0004343,MP:0004346,MP:0004507,MP:0004509,MP:0004619,MP:0004691,MP:0005298,MP:0005354,MP:0006011,MP:0006279,MP:0006287,MP:0006288,MP:0008320,MP:0009479,MP:0009509,MP:0009510,MP:0009522,MP:0009524,MP:0011026,MP:0011089,MP:0011158 - //MOUSE 116 2263 FGFR2 MGI:95523 Fgfr2 MP:0009522,MP:0009525 - while (rs.next()) { - Organism organism = Organism.valueOf(rs.getString("organism")); - String modelId = rs.getString("model_id"); - - int entrezId = rs.getInt("entrez_id"); - String humanGeneSymbol = rs.getString("human_gene_symbol"); - - String modelGeneId = rs.getString("model_gene_id"); - String modelGeneSymbol = rs.getString("model_gene_symbol"); - - modelId = modelGeneId + "_" + modelId; - - String phenotypeIdString = rs.getString("pheno_ids"); - String[] mpInitial = phenotypeIdString.split(","); - List phenotypeIds = Arrays.asList(mpInitial); - - GeneModel model = new GeneModel(modelId, organism, entrezId, humanGeneSymbol, modelGeneId, modelGeneSymbol, phenotypeIds); - models.add(model); - } - } catch (SQLException e) { - logger.error("Problem setting up model query: {}", modelQuery, e); - } - return models; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyService.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyService.java deleted file mode 100644 index d356de88f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyService.java +++ /dev/null @@ -1,36 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.List; -import java.util.Set; - -/** - * Service for retrieving phenotype data from the database for use by the - * prioritisers. - * - * @author Jules Jacobsen - */ -public interface OntologyService { - - public Set getHpoTerms(); - - public Set getMpoTerms(); - - public Set getZpoTerms(); - - public List getHpoIdsForDiseaseId(String diseaseId); - - public Set getHpoMatchesForHpoTerm(PhenotypeTerm hpoTerm); - - public Set getMpoMatchesForHpoTerm(PhenotypeTerm hpoTerm); - - public Set getZpoMatchesForHpoTerm(PhenotypeTerm hpoTerm); - - public PhenotypeTerm getPhenotypeTermForHpoId(String hpoId); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyServiceImpl.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyServiceImpl.java deleted file mode 100644 index 0bb9aea98..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyServiceImpl.java +++ /dev/null @@ -1,96 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import de.charite.compbio.exomiser.core.dao.DiseaseDao; -import de.charite.compbio.exomiser.core.dao.HumanPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.MousePhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.ZebraFishPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.ArrayList; -import java.util.List; -import java.util.Set; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.cache.annotation.Cacheable; -import org.springframework.stereotype.Service; - -/** - * Service for retrieving phenotype data from the database for use by the - * prioritisers. This class is complemented by the PriorityService. - * - * @author Jules Jacobsen - */ -@Service -public class OntologyServiceImpl implements OntologyService { - - @Autowired - private DiseaseDao diseaseDao; - - @Autowired - private HumanPhenotypeOntologyDao hpoDao; - @Autowired - private MousePhenotypeOntologyDao mpoDao; - @Autowired - private ZebraFishPhenotypeOntologyDao zpoDao; - - @Cacheable(value = "diseaseHp") - @Override - public List getHpoIdsForDiseaseId(String diseaseId) { - return new ArrayList<>(diseaseDao.getHpoIdsForDiseaseId(diseaseId)); - } - - @Cacheable(value = "hpo") - @Override - public Set getHpoTerms() { - return hpoDao.getAllTerms(); - } - - @Cacheable(value = "mpo") - @Override - public Set getMpoTerms() { - return mpoDao.getAllTerms(); - } - - @Cacheable(value = "zpo") - @Override - public Set getZpoTerms() { - return zpoDao.getAllTerms(); - } - - @Override - public Set getHpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { - return hpoDao.getPhenotypeMatchesForHpoTerm(hpoTerm); - } - - @Override - public Set getMpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { - return mpoDao.getPhenotypeMatchesForHpoTerm(hpoTerm); - } - - @Override - public Set getZpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { - return zpoDao.getPhenotypeMatchesForHpoTerm(hpoTerm); - } - - /** - * Returns the matching HPO PhenotypeTerm for a given HPO id or null if the - * term cannot be found. - * - * @param hpoId - * @return - */ - @Override - public PhenotypeTerm getPhenotypeTermForHpoId(String hpoId) { - for (PhenotypeTerm hpoTerm : getHpoTerms()) { - if (hpoTerm.getId().equals(hpoId)) { - return hpoTerm; - } - } - return null; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/PriorityService.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/PriorityService.java deleted file mode 100644 index e5519dc82..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/PriorityService.java +++ /dev/null @@ -1,99 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import de.charite.compbio.exomiser.core.model.Organism; -import de.charite.compbio.exomiser.core.dao.DiseaseDao; -import de.charite.compbio.exomiser.core.model.GeneModel; -import de.charite.compbio.exomiser.core.model.Model; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.ArrayList; -import java.util.Collections; -import java.util.List; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Service; - -/** - * Service class which offers a single interface to other services required by - * prioritisers. This aims to simplify getting data from different Services. - * - * @author Jules Jacobsen - */ -@Service -public class PriorityService { - - private static final Logger logger = LoggerFactory.getLogger(PriorityService.class); - - @Autowired - private OntologyService ontologyService; - @Autowired - private ModelService modelService; - @Autowired - private DiseaseDao diseaseDao; - - public List makePhenotypeTermsFromHpoIds(List hpoIds) { - List phenotypeTerms = new ArrayList<>(); - for (String hpoId : hpoIds) { - PhenotypeTerm hpoTerm = ontologyService.getPhenotypeTermForHpoId(hpoId); - if (hpoTerm != null) { - phenotypeTerms.add(hpoTerm); - } - } - return phenotypeTerms; - } - - public Set getHpoTerms() { - return ontologyService.getHpoTerms(); - } - - public Set getMpoTerms() { - return ontologyService.getMpoTerms(); - } - - public Set getZpoTerms() { - return ontologyService.getZpoTerms(); - } - - public List getHpoIdsForDiseaseId(String diseaseId) { - return ontologyService.getHpoIdsForDiseaseId(diseaseId); - } - - public Set getSpeciesMatchesForHpoTerm(PhenotypeTerm hpoTerm, Organism species) { - switch (species) { - case HUMAN: - return ontologyService.getHpoMatchesForHpoTerm(hpoTerm); - case MOUSE: - return ontologyService.getMpoMatchesForHpoTerm(hpoTerm); - case FISH: - return ontologyService.getZpoMatchesForHpoTerm(hpoTerm); - default: - return Collections.emptySet(); - } - } - - public List getModelsForOrganism(Organism species) { - logger.info("Fetching disease/gene model phenotype annotations and HUMAN-{} gene orthologs", species); - switch (species) { - case HUMAN: - return modelService.getHumanDiseaseModels(); - case MOUSE: - return modelService.getMouseGeneModels(); - case FISH: - return modelService.getFishGeneModels(); - default: - return Collections.emptyList(); - } - } - - public String getDiseaseTermForId(String diseaseId) { - return diseaseDao.getDiseaseIdToTerms().get(diseaseId); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ScoreDistribution.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ScoreDistribution.java deleted file mode 100644 index ec490844b..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ScoreDistribution.java +++ /dev/null @@ -1,75 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import java.util.List; - -public class ScoreDistribution { - - private double[] scores; - private double[] pvalues; - private double numberRandomizations; - private int numberQueryTerms; - private int mimNumber; - - public int getNumberQueryTerms() { - return numberQueryTerms; - } - - public int getMimNumber() { - return mimNumber; - } - - - public void setDistribution(List scoresAL, List pvaluesAL, double numRandomizations){ - - this.scores = new double[scoresAL.size()]; - this.pvalues = new double[pvaluesAL.size()]; - - for (int i = 0 ; i < scoresAL.size(); i++){ - this.scores[i] = scoresAL.get(i); - this.pvalues[i] = pvaluesAL.get(i); - } - - this.numberRandomizations = numRandomizations; - - } - - public double getPvalue(double score, double roundFactor) { - - score = round(score, roundFactor); - - /* maybe this value is too high */ - if ( scores[scores.length-1] < score ) - return (double)1/numberRandomizations; - - /* init with 1 */ - double pvalue = 1; - - for (int i = 0; i < scores.length ; i++){ - - double scoreCand = scores[i]; - if ( score <= scoreCand ){ - pvalue = pvalues[i]; - break; - } - - } - return pvalue; - } - - public static double round( double d , double fact) { - return Math.rint( d * fact ) / fact; - } - - @Override - public String toString() { - StringBuffer buff = new StringBuffer("score dist for: "+mimNumber+":\n"); - for (int i = 0 ; i< scores.length ; i++){ - buff.append(scores[i]+"-"+pvalues[i]+"\n"); - } - return buff.toString(); - } - -} - - - diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ScoreDistributionContainer.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ScoreDistributionContainer.java deleted file mode 100644 index 564cf1deb..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/ScoreDistributionContainer.java +++ /dev/null @@ -1,187 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import java.io.BufferedReader; -import java.io.FileReader; -import java.io.IOException; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -public class ScoreDistributionContainer { - - private final Logger logger = LoggerFactory.getLogger(ScoreDistributionContainer.class); - - private boolean verboseParsing; - - private int maxNumberQueryTerms = 20; - - public ScoreDistributionContainer(boolean verboseInParsing) { - - this.verboseParsing = verboseInParsing; - this.key2scoreDistribution = new HashMap>(); - } - - private Map> key2scoreDistribution = null; - - public ScoreDistributionContainer() { - this.key2scoreDistribution = new HashMap>(); - } - - public synchronized void addDistribution(String diseaseId, int numberQueryTerms, boolean symmetric, ScoreDistribution actualDistribution) { - - String key = getKey(symmetric, numberQueryTerms); - - Map mim2scoredist; - if (key2scoreDistribution.containsKey(key)) - mim2scoredist = key2scoreDistribution.get(key); - else - mim2scoredist = new HashMap(); - - mim2scoredist.put(diseaseId, actualDistribution); - key2scoreDistribution.put(key, mim2scoredist); - - } - - public static String getKey(boolean symmetric, int numberQueryTerms) { - - if (symmetric) - return numberQueryTerms + "_symmetric"; - else - return numberQueryTerms + ""; - } - - public ScoreDistribution getDistribution(String entrezGeneId, int numQueryTerms, boolean symmetric, String scoreDistributionFolder) { - - if (numQueryTerms > maxNumberQueryTerms) - numQueryTerms = maxNumberQueryTerms; - - while (true) { - - String key = getKey(symmetric, numQueryTerms); - Map mim2scoredist = key2scoreDistribution.get(key); - ScoreDistribution scoreDist = null; - if (mim2scoredist != null) - scoreDist = mim2scoredist.get(entrezGeneId); - - if (mim2scoredist == null || scoreDist == null) { - if (verboseParsing) { - System.err.println("Could not find scoreDistribution for entrezid " + entrezGeneId + " and " + numQueryTerms + " and " - + symmetric); - System.err.println("Used key: " + key); - } - if (numQueryTerms > 1) { - numQueryTerms = numQueryTerms - 1; - if (verboseParsing) - System.err.println("setting numQueryTerms to: " + numQueryTerms); - - if (!didParseDistributions(symmetric, numQueryTerms)) { - if (verboseParsing) - System.err.println("try parsing file for new numQueryTerms"); - parseDistributions(symmetric, numQueryTerms, scoreDistributionFolder); - } - - } - else { - System.err.println("NO WAY! Could not even find scoreDistribution for entrezgene " + entrezGeneId + " and " + numQueryTerms - + " and " + symmetric); - System.err.println("returning null now"); - return null; - } - } - else { - return scoreDist; - } - } - } - - public boolean didParseDistributions(boolean symmetric, int numQueryTerms) { - - if (numQueryTerms > maxNumberQueryTerms) - numQueryTerms = maxNumberQueryTerms; - return key2scoreDistribution.containsKey(getKey(symmetric, numQueryTerms)); - } - - /** - * - * - * @param symmetric - * @param numQueryTerms - * @param distributionsFolder - */ - public synchronized void parseDistributions(boolean symmetric, int numQueryTerms, String distributionsFolder) { - - if (numQueryTerms > maxNumberQueryTerms) - numQueryTerms = maxNumberQueryTerms; - - String key = getKey(symmetric, numQueryTerms); - String line = null; - String file = distributionsFolder + key + ".out"; - - // if (name.startsWith("TermOv") || name.startsWith("SimpleFeature")) - // file = folder+key; - // else - // file = folder+key+".out"; - - if (verboseParsing) - logger.info("try parsing file: {}", file); - try { - final BufferedReader in = new BufferedReader(new FileReader(file)); - ScoreDistribution actualDistribution = null; - String actualDiseaseId = null; - double numberRandomizations = -1; - List scores = new ArrayList(); - List pvalues = new ArrayList(); - while ((line = in.readLine()) != null) { - - if (line.startsWith(">")) { - - line = line.replaceAll(">", ""); - - if (actualDistribution != null) { - actualDistribution.setDistribution(scores, pvalues, numberRandomizations); - addDistribution(actualDiseaseId, numQueryTerms, symmetric, actualDistribution); - scores = new ArrayList(); - pvalues = new ArrayList(); - } - actualDistribution = new ScoreDistribution(); - - String[] split = line.split("_"); - actualDiseaseId = split[0]; - numberRandomizations = Double.parseDouble(split[1]); - } - else { - int indexFirstMinus = line.indexOf('-'); - Double score; - try { - score = Double.parseDouble(line.substring(0, indexFirstMinus)); - } catch (NumberFormatException e) { - indexFirstMinus = line.indexOf('-', indexFirstMinus + 1); - score = Double.parseDouble(line.substring(0, indexFirstMinus)); - } - Double pValue = Double.parseDouble(line.substring(indexFirstMinus + 1)); - scores.add(score); - pvalues.add(pValue); - } - }// end while - if (verboseParsing) - logger.info("done while loop.... add last"); - - actualDistribution.setDistribution(scores, pvalues, numberRandomizations); - addDistribution(actualDiseaseId, numQueryTerms, symmetric, actualDistribution); - } catch (IOException e) { - throw new RuntimeException(line + "\n" + e); - - } - if (verboseParsing) - logger.info("done parsing"); - - } - - public void setMaxNumberQueryTerms(int maxNumberQueryTerms) { - this.maxNumberQueryTerms = maxNumberQueryTerms; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoAnnotation.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoAnnotation.java deleted file mode 100644 index 04a450f23..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoAnnotation.java +++ /dev/null @@ -1,84 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import java.util.Set; -import java.util.HashSet; - -import ontologizer.go.Term; - -/** - * Annotation relation between a gene and a term. - * - * @author sebastiankohler - * - */ -public class UberphenoAnnotation { - - /** - * The annotated term from uberpheno. - */ - private Term term; - - /** - * Which OMIMs are responsible for making this annotation - */ - private Set evidenceOmimIds = new HashSet<>(); - /** - * The annotated gene's symbol. - */ - private String geneSymbol; - /** - * The annotated gene's entrez id. - */ - private int entrezGeneId; - - /** - * Construct a new annotation relation bet - * - * @param entrez - * @param geneSymbol - * @param term - * @param evidence - */ - public UberphenoAnnotation(int entrez, String geneSymbol, Term term, Set evidence) { - this.entrezGeneId = entrez; - this.geneSymbol = geneSymbol; - this.term = term; - this.evidenceOmimIds = evidence; - } - - /** - * @return The annotated term from the uberpheno - */ - public Term getTerm() { - return term; - } - - /** - * @return The entrez-id of the annotated gene. - */ - public int getEntrezGeneId() { - return entrezGeneId; - } - - /** - * @return The OMIM-IDs responsible for this annotation. - */ - public Set getEvidenceOmimIds() { - return evidenceOmimIds; - } - - /** - * @return The symbol of the annotated gene. - */ - public String getGeneSymbol() { - return geneSymbol; - } - - /* (non-Javadoc) - * @see java.lang.Object#toString() - */ - @Override - public String toString() { - return geneSymbol + "(" + entrezGeneId + "): " + term + " (evidence: " + evidenceOmimIds + ")"; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoAnnotationContainer.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoAnnotationContainer.java deleted file mode 100644 index 826cf9fe8..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoAnnotationContainer.java +++ /dev/null @@ -1,209 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import java.util.Map; -import java.util.HashMap; -import java.util.Set; -import java.util.HashSet; - -import ontologizer.go.Ontology; -import ontologizer.go.Term; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import similarity.SimilarityUtilities; -import sonumina.math.graph.SlimDirectedGraphView; - -/** - * - * Container - * - * @author sebastiankohler - * - */ -public class UberphenoAnnotationContainer { - - private static final Logger logger = LoggerFactory.getLogger(UberphenoAnnotationContainer.class); - - public final Map> container = new HashMap<>(); - - /** - * @param entrezId - * @param omimIdsToHandle - * @param isToExclude - * @return Set of annotations - */ - private Set getAnnotationsFiltered(int entrezId, Set omimIdsToHandle, boolean isToExclude) { - - Set annots = new HashSet<>(); - - for (UberphenoAnnotation an : container.get(entrezId)) { - /* - * If we have to exclude links stemming from - * specific omim-entries we check that here - */ - boolean annotationHasEvidenceMatching = false; - for (int omimEvidence : an.getEvidenceOmimIds()) { // iterate all omim evidences for that annotation - if (omimIdsToHandle.contains(omimEvidence)) { // is this an omim-entry that forbids to use this annotation? - annotationHasEvidenceMatching = true; - break; - } - } - - if (isToExclude) { - // if (annotationHasvidenceMatching){ - if (an.getTerm().getID().getPrefix().toString().equals("HP")) { - continue; - } - } else if (!isToExclude) { - if (!annotationHasEvidenceMatching) { - continue; - } - } - annots.add(an.getTerm()); - } - return annots; - } - - /** - * @param entrezId - * @param omimLinksToInclude - * @return Set of annotations - */ - public Set getAnnotationsOfGeneOnlyFromOmims(int entrezId, Set omimLinksToInclude) { - if (!container.containsKey(entrezId)) { - return null; - } - return getAnnotationsFiltered(entrezId, omimLinksToInclude, false); - } - - /** - * @param entrezId - * @param omimLinksToExclude - * @return Set of annotations - */ - public Set getAnnotationsOfGeneExcludingOmims(int entrezId, Set omimLinksToExclude) { - if (!container.containsKey(entrezId)) { - return null; - } - return getAnnotationsFiltered(entrezId, omimLinksToExclude, true); - } - - /** - * @param omimId - * @return Set of annotations - */ - public Set getAnnotationsOfOmim(int omimId) { - - Set annotations = new HashSet<>(); - for (int entrezId : container.keySet()) { - for (UberphenoAnnotation annotation : container.get(entrezId)) { - if (annotation.getEvidenceOmimIds().contains(omimId)) { - annotations.add(annotation.getTerm()); - } - } - } - return annotations; - } - - /** - * @param entrezId - * @return Set of annotations - */ - public Set getAnnotationsOfGene(int entrezId) { - if (!container.containsKey(entrezId)) { - return null; - } - - Set annots = new HashSet<>(); - for (UberphenoAnnotation an : container.get(entrezId)) { - annots.add(an.getTerm()); - } - return annots; - } - - /** - * @param symbol - * @return an NCBI Entrez ID (integer) corresponding to the Gene Symbol - */ - public int getEntrezIdFromSymbol(String symbol) { - for (int e : container.keySet()) { - for (UberphenoAnnotation an : container.get(e)) { - if (an.getGeneSymbol().equalsIgnoreCase(symbol)) { - return e; - } - } - } - return -1; - } - - /** - * @param entrez - * @return a Gene symbol corresponding to the entrez ID or null if entrez id - * cannot be found. - */ - public String getSymbolFromEntrez(int entrez) { - for (UberphenoAnnotation an : container.get(entrez)) { - return an.getGeneSymbol(); - } - return null; - } - - /** - * @param uberpheno - * @param uberphenoSlim - */ - public Map calculateInformationContentUberpheno(Ontology uberpheno, SlimDirectedGraphView uberphenoSlim) { - - Map> term2geneids = new HashMap<>(); - - for (int geneId : container.keySet()) { - Set annotations = getAnnotationsOfGene(geneId); - for (Term annotated : annotations) { - - if (!uberphenoSlim.vertex2Index.containsKey(annotated)) { - annotated = uberpheno.getTermIncludingAlternatives(annotated.getIDAsString()); - } - - for (Term annotatedAndInduced : uberphenoSlim.getAncestors(annotated)) { - - Set genesForTerm; - if (term2geneids.containsKey(annotatedAndInduced)) { - genesForTerm = term2geneids.get(annotatedAndInduced); - } else { - genesForTerm = new HashSet<>(); - } - - genesForTerm.add(geneId); - term2geneids.put(annotatedAndInduced, genesForTerm); - } - } - } - - return calculateTermIC(term2geneids, uberpheno); - } - - private Map calculateTermIC(Map> term2objectIds, Ontology ontology) { - - Term root = ontology.getRootTerm(); - Map term2frequency = new HashMap<>(); - for (Term t : term2objectIds.keySet()) { - term2frequency.put(t, term2objectIds.get(t).size()); - } - int maxFreq = term2frequency.get(root); - Map term2informationContent = SimilarityUtilities.caculateInformationContent(maxFreq, (HashMap) term2frequency); - - int frequencyZeroCounter = 0; - double ICzeroCountTerms = -1 * (Math.log(1 / (double) maxFreq)); - - for (Term t : ontology) { - if (!term2frequency.containsKey(t)) { - ++frequencyZeroCounter; - term2informationContent.put(t, ICzeroCountTerms); - } - } - - logger.info("WARNING: Frequency of " + frequencyZeroCounter + " terms was zero!! Calculated by -1 * (Math.log(1/(double)maxFreq)) = -1 * (Math.log(1/(double)" + maxFreq + ")))"); - logger.info("Set IC of these to : " + ICzeroCountTerms); - return term2informationContent; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoIO.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoIO.java deleted file mode 100644 index f1b7b0abb..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/prioritisers/util/UberphenoIO.java +++ /dev/null @@ -1,208 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import hpo.HPOutils; - -import java.io.BufferedReader; -import java.io.FileReader; -import java.io.IOException; -import java.util.List; -import java.util.ArrayList; -import java.util.Collections; -import java.util.Set; -import java.util.HashSet; -import java.util.Random; -import java.util.regex.Matcher; -import java.util.regex.Pattern; - -import ontologizer.go.OBOParser; -import ontologizer.go.OBOParserException; -import ontologizer.go.Ontology; -import ontologizer.go.Term; -import ontologizer.go.TermContainer; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import sonumina.math.graph.SlimDirectedGraphView; - -/** - * IO methods for reading the uberpheno obo file and the annotation file. - * - * @author sebastiankohler - * @version 0.02 (January 15, 2013) - */ -public class UberphenoIO { - - private static final Logger logger = LoggerFactory.getLogger(UberphenoIO.class); - /** - * This pattern matches an HP, MP, or ZP accession number, e.g., HP:0001234. - */ - private final Pattern hpoPattern = Pattern.compile("([HZM]P:\\d{7})"); - - /** - * @param uphenoAnnotationFile - * @param uberpheno - * @param uberphenoSlim - */ - public UberphenoAnnotationContainer createUberphenoAnnotationFromFile(String uphenoAnnotationFile, Ontology uberpheno, SlimDirectedGraphView uberphenoSlim) { - - UberphenoAnnotationContainer annotations = new UberphenoAnnotationContainer(); - - try { - - BufferedReader in = new BufferedReader(new FileReader(uphenoAnnotationFile)); - String line = null; - while ((line = in.readLine()) != null) { - - if (line.startsWith("#")) { - continue; - } - - String[] split = line.split(";"); - int entrez = Integer.parseInt(split[0]); - String geneSymbol = split[1]; - String termidString = split[2]; // this contains uberpheno-term name and ID (ZP,MP,HP) - - Matcher mat = hpoPattern.matcher(termidString); - mat.find(); - String termId = mat.group(); - Term t = uberpheno.getTerm(termId); - - Set omimids = new HashSet<>(); - if (split.length == 4) { - omimids = parseOmimsFromLine(split[3]); - } - - UberphenoAnnotation annotation = new UberphenoAnnotation(entrez, geneSymbol, t, omimids); - addAnnotation(annotation, annotations); - } - in.close(); - - } catch (IOException e) { - logger.error("UNable to read uberpheno annnotation file {}", uphenoAnnotationFile, e); - } - UberphenoAnnotationContainer cleanedUp = cleanUp(annotations, uberphenoSlim, uberpheno.getRootTerm()); - return cleanedUp; - } - - /** - * Remove duplicated annotations, i.e. two annotations are referring to - * terms that are on one path in the ontology. This will remove the more - * general annotation and keep only the most specific annotation. - * - * @param annotationContainer - * @param uberphenoSlim - * @param root - * @return an uberpheno annotation container from which duplicate - * annotations have been removed. - */ - private UberphenoAnnotationContainer cleanUp(UberphenoAnnotationContainer annotationContainer, SlimDirectedGraphView uberphenoSlim, Term root) { - - UberphenoAnnotationContainer newContainer = new UberphenoAnnotationContainer(); - - for (int entrezId : annotationContainer.container.keySet()) { - - Set annotationSet = annotationContainer.container.get(entrezId); - ArrayList annotations = new ArrayList<>(); - for (UberphenoAnnotation a : annotationSet) { - annotations.add(a.getTerm()); - } - - List annotationsFiltered = HPOutils.cleanUpAssociation(annotations, uberphenoSlim, root); - Set annotationsFilteredHS = new HashSet<>(annotationsFiltered); - - // rescue the ones with evidence (omim,orpha.. i.e. humans) - for (UberphenoAnnotation a : annotationSet) { - if (a.getEvidenceOmimIds().size() > 0 || annotationsFilteredHS.contains(a.getTerm())) { - addAnnotation(a, newContainer); - } - } - } - - return newContainer; - } - - /** - * Fetch six-digit omim-ids from a string of the form - * "ORPHANET:783,OMIM:180849" - * - * @param string - * @return set of 6-digit OMIM ids corresponding to string - */ - private HashSet parseOmimsFromLine(String string) { - - HashSet omims = new HashSet<>(); - String[] evidences = string.split(","); // ORPHANET:783,OMIM:180849 - for (String ev : evidences) { - String[] id = ev.split(":"); // OMIM:180849 - String db = id[0]; - if (db.equals("OMIM")) { - int db_id = Integer.parseInt(id[1]); - omims.add(db_id); - } - } - return omims; - } - - /** - * Add an annotation to the given annotation container. - * - * @param annotation - * @param container - */ - private void addAnnotation(UberphenoAnnotation annotation, UberphenoAnnotationContainer container) { - int entrez = annotation.getEntrezGeneId(); - HashSet annotationsOfGene; - if (container.container.containsKey(entrez)) { - annotationsOfGene = container.container.get(entrez); - } else { - annotationsOfGene = new HashSet<>(); - } - - annotationsOfGene.add(annotation); - container.container.put(entrez, annotationsOfGene); - } - - /** - * Create a randomized version of the associations between genes and - * uberpheno-terms. - * - * @param uberphenoAnnotationContainer - * @param allUberphenoTermsHpMpZp - * @return a randomized version of gene/uberpheno term associations - */ - public UberphenoAnnotationContainer createRandomizedVersion(UberphenoAnnotationContainer uberphenoAnnotationContainer, List allUberphenoTermsHpMpZp) { - - UberphenoAnnotationContainer annotations = new UberphenoAnnotationContainer(); - - Collections.shuffle(allUberphenoTermsHpMpZp); - Random generator = new Random(); - generator.setSeed(System.currentTimeMillis()); - - for (int geneId : uberphenoAnnotationContainer.container.keySet()) { - for (UberphenoAnnotation oldAnnotation : uberphenoAnnotationContainer.container.get(geneId)) { - int randomIndex = generator.nextInt(allUberphenoTermsHpMpZp.size()); - UberphenoAnnotation newAnnotation = new UberphenoAnnotation(geneId, oldAnnotation.getGeneSymbol(), allUberphenoTermsHpMpZp.get(randomIndex), oldAnnotation.getEvidenceOmimIds()); - addAnnotation(newAnnotation, annotations); - } - } - return annotations; - } - - /** - * Parse the uberpheno obo-file. - * - * @param uphenoFile - * @return an Ontology object corresponding to the uberpheno file. - */ - public Ontology parseUberpheno(String uphenoFile) { - // parse uberpheno ontology - OBOParser oboParser = new OBOParser(uphenoFile); - try { - logger.info(oboParser.doParse()); - } catch (IOException | OBOParserException e) { - logger.error("Unable to parse uberpheno OBO file {}", uphenoFile, e); - } - TermContainer termContainer = new TermContainer(oboParser.getTermMap(), oboParser.getFormatVersion(), oboParser.getDate()); - return new Ontology(termContainer); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/util/PublishedMutationSearcher.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/util/PublishedMutationSearcher.java deleted file mode 100644 index 2bdd60ae4..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/util/PublishedMutationSearcher.java +++ /dev/null @@ -1,198 +0,0 @@ -package de.charite.compbio.exomiser.core.util; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.ArrayList; -import java.util.List; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - - -/** - * Once the exomiser has identified a list of variants, it can - * search the postgreSQL database to look for "hits" amongst the - * HGMD Pro variants. To do so, it expects to get a list of variants - * that remain after initial prioritization (frequency filtering etc), - * and then it looks up each variant in the database. - * @version 0.05 (25 January, 2014). - * @author Peter Robinson - */ -public class PublishedMutationSearcher { - - private final Logger logger = LoggerFactory.getLogger(PublishedMutationSearcher.class); - - /** List of variants for which we want to search the database for - * known mutations in the HGMD data. - */ - private List varEvalList=null; - - private List hitList=null; - - private Connection connection=null; - - private int newcounter=1; - - /** - * We have encoded the clinical significance classes of ClinVar using - * chars (they are stored as such in the table "clinvar"). This function - * retrieves the corresponding string. - * @see exomizer.io.ClinVarParser - */ - private String getClinVarClass(String s) { - char c = s.charAt(0); - switch (c) { - case 'P': return "Pathogenic"; - case 'L': return "Likely pathogenic"; - case 'U': return "Uncertain significance"; - case 'B': return "Benign"; - case 'C': return "Likely benign"; - case 'T': return "protective"; - case 'D': return "drug response"; - case 'S': return "confers sensitivity"; - case 'A': return "Association"; - default: return "?"; - } - } - - /** - * This function looks for mutations published eitherin ClinVar or in HGMD - * that match with the chromosomal position of the variant identified in - * the exome sequencing project. For every mutation found,it adds an HTML link that - * will be shown by the PheniX server. - * @param lst A list of all variants found in a certain gene. - */ - public void addPublishedMutationsToVariants(List lst) { - /* First look for ClinVar stuff */ - try { - String query = "SELECT id,signif FROM clinvar "+ - "WHERE chromosome = ? AND position = ?;"; - PreparedStatement qps = connection.prepareStatement(query); - for (VariantEvaluation ve : lst) { - int chr = ve.getChromosome(); - int pos = ve.getPosition(); - qps.setInt(1,chr); - qps.setInt(2,pos); - ResultSet rs = qps.executeQuery(); - while (rs.next()) { - int id = rs.getInt(1); - String sign = rs.getString(2); - String acc = String.format("RCV%09d", id); - String url = String.format("http://www.ncbi.nlm.nih.gov/clinvar/%s/",acc); - String cls = getClinVarClass(sign); - String anch = String.format("ClinVar (%s)",url,newcounter,cls); - newcounter++; - ve.addMutationReference(anch); - } - } - } catch (SQLException e) { - logger.error("SQL Error while retrieving ClinVar data.", e); - // skip - } - /* Now HGMD PRO */ - try { - String query = "SELECT hgmdacc FROM hgmdpro "+ - "WHERE chromosome = ? AND position = ?;"; - PreparedStatement qps = connection.prepareStatement(query); - for (VariantEvaluation ve : lst) { - int chr = ve.getChromosome(); - int pos = ve.getPosition(); - String sym = ve.getGeneSymbol(); - qps.setInt(1,chr); - qps.setInt(2,pos); - ResultSet rs = qps.executeQuery(); - while (rs.next()) { - String acc = rs.getString(1); - String url = String.format("http://www.hgmd.cf.ac.uk/ac/gene.php?gene=%s&accession=%s",sym,acc); - String anch = String.format("HGMD",url,newcounter); - newcounter++; - ve.addMutationReference(anch); - } - } - } catch (SQLException e) { - logger.error("SQL Error while retrieving HGMD data", e); - // skip - } - } - - /** - * Use this constructor if you want to use the method - * {@link #addPublishedMutationsToVariants}. - * @param conn An SQL connection to the Exomiser database - */ - public PublishedMutationSearcher(Connection conn) { - this.connection = conn; - } - - - public PublishedMutationSearcher(List velist,Connection conn) { - this.varEvalList = velist; - this.hitList = new ArrayList(); - this.connection = conn; - } - - /** - * This function creates a String to display the HGMD pro information about a variant - * that was identified by the Exomiser/CRE-Server if there is information about - * the variant in the Pro database. - */ - private void addProHit(String cdna,String prot,int pmid,String disease,String gensym,String genotype){ - String s = String.format("%s (%s:%s:%s): %s",disease,gensym,cdna,prot,genotype); - if (pmid>0) { - String a = String.format("%d", - pmid,pmid); - s = String.format("%s [pmid: %s]",s,a); - } - this.hitList.add(s); - } - - - /** - * @return A list of String intended for HTML display representing HGMD hits (published mutations). - */ - public List getHGMDHits() { - return this.hitList; - } - - /** - * Search the database over all variants that have survived Exomiser filtering - * for matches in the HGMD (Uses a table in the postgreSQL database). Any hits - * found are added to the variable {@link #hitList} by calling the - * function {@link #addProHit}. - */ - public void evaluateHGMDPro() { - try { - String query = "SELECT cdna,prot,pmid,disease,genesym FROM hgmddisease d, hgmdpro p "+ - "WHERE chromosome = ? AND position = ? AND d.id=p.id;"; - PreparedStatement qps = connection.prepareStatement(query); - for (VariantEvaluation ve : varEvalList) { - int chr = ve.getChromosome(); - int pos = ve.getPosition(); - String gt = ve.getGenotypeAsString(); - qps.setInt(1,chr); - qps.setInt(2,pos); - ResultSet rs = qps.executeQuery(); - while (rs.next()) { - String cdna = rs.getString(1); - String prot = rs.getString(2); - int pmid = rs.getInt(3); - String disease = rs.getString(4); - String gensym = rs.getString(5); - addProHit(cdna,prot,pmid,disease,gensym, gt); - } - } - } catch (SQLException e) { - System.err.println(e.getMessage()); - /* Database error, just skip this step. */ - } - - - } - - - - - -} \ No newline at end of file diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/HtmlResultsWriter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/HtmlResultsWriter.java deleted file mode 100644 index a82445dff..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/HtmlResultsWriter.java +++ /dev/null @@ -1,171 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.SerializationFeature; -import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; -import com.fasterxml.jackson.datatype.jdk7.Jdk7Module; -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.filters.FilterReport; -import de.charite.compbio.exomiser.core.model.Gene; -import java.io.BufferedWriter; -import java.io.IOException; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.List; -import java.util.Locale; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.thymeleaf.TemplateEngine; -import org.thymeleaf.context.Context; - -/** - * - * @author Jules Jacobsen - */ -public class HtmlResultsWriter implements ResultsWriter { - - private static final Logger logger = LoggerFactory.getLogger(HtmlResultsWriter.class); - - private final TemplateEngine templateEngine; - - private static final OutputFormat OUTPUT_FORMAT = OutputFormat.HTML; - - public HtmlResultsWriter(TemplateEngine templateEngine) { - Locale.setDefault(Locale.UK); - this.templateEngine = templateEngine; - } - - @Override - public void writeFile(Analysis analysis, OutputSettings settings) { - - String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); - Path outFile = Paths.get(outFileName); - - try (BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - - writer.write(writeString(analysis, settings)); - - } catch (IOException ex) { - logger.error("Unable to write results to file {}.", outFileName, ex); - } - logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); - - } - - @Override - public String writeString(Analysis analysis, OutputSettings settings) { - Context context = new Context(); - //write the settings - ObjectMapper mapper = new ObjectMapper(new YAMLFactory()); - //required for correct output of Path types - mapper.registerModule(new Jdk7Module()); - mapper.configure(SerializationFeature.INDENT_OUTPUT, true); -// mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); - String jsonSettings = ""; - try { - jsonSettings = mapper.writeValueAsString(analysis); - jsonSettings += mapper.writeValueAsString(settings); - } catch (JsonProcessingException ex) { - logger.error("Unable to process JSON settings", ex); - } - context.setVariable("settings", jsonSettings); - - SampleData sampleData = analysis.getSampleData(); - //make the user aware of any unanalysed variants - List unAnalysedVarEvals = sampleData.getUnAnnotatedVariantEvaluations(); - context.setVariable("unAnalysedVarEvals", unAnalysedVarEvals); - - //write out the analysis reports section - List analysisStepReports = makeAnalysisStepReports(analysis); - context.setVariable("filterReports", analysisStepReports); - //write out the variant type counters - List variantTypeCounters = makeVariantEffectCounters(sampleData.getVariantEvaluations()); - List sampleNames= sampleData.getSampleNames(); - String sampleName = "Anonymous"; - if(!sampleNames.isEmpty()) { - sampleName = sampleNames.get(0); - } - context.setVariable("sampleName", sampleName); - context.setVariable("sampleNames", sampleNames); - context.setVariable("variantTypeCounters", variantTypeCounters); - - List passedGenes = ResultsWriterUtils.getMaxPassedGenes(sampleData.getGenes(), settings.getNumberOfGenesToShow()); - context.setVariable("genes", passedGenes); - - return templateEngine.process("results", context); - } - - protected List makeVariantEffectCounters(List variantEvaluations) { - return ResultsWriterUtils.makeVariantEffectCounters(variantEvaluations); - } - - protected List makeAnalysisStepReports(Analysis analysis) { - return ResultsWriterUtils.makeFilterReports(analysis); - } - - //TODO: -// /** -// * This function writes out a table representing the PED file of the family -// * being analysed (if a multisample VCF file is being analysed) or the name -// * of the sample (for a single-sample VCF file). -// *

-// * For multisample VCF files, a color code is used to mark the following -// * kinds of samples (individuals): -// *

    -// *
  • Unaffected parent: white
  • -// *
  • Affected (whether parent or not): dark grey
  • -// *
  • Unaffected sibling: light blue
  • -// *
-// * The same color code will be used for showing the genotypes of the -// * individual variants, which hopefully will help in their interpretation. -// * -// * @param out An open file handle (can come from the command line or server -// * versions of Exomiser). -// */ -// public void writePedigreeTable(Writer out) throws IOException { -// int n = this.pedigree.getNumberOfIndividualsInPedigree(); -// if (n == 1) { -// String sampleName = this.pedigree.getSingleSampleName(); -// out.write("\n"); -// out.write(String.format("\n", sampleName)); -// out.write("
Sample name: %s
\n"); -// } else { /* multiple samples */ -// -// out.write("

Analyzed samples

\n"); -// out.write("

affected: red, parent of affected: light blue, unaffected: white

\n"); -// out.write("\n"); -// for (int i = 0; i < n; ++i) { -// List lst = this.pedigree.getPEDFileDatForNthPerson(i); -// String fam = lst.get(0); -// String id = lst.get(1); -// String fathID = lst.get(2); -// String mothID = lst.get(3); -// String sex = lst.get(4); -// String disease = lst.get(5); -// out.write(""); -// if (this.pedigree.isNthPersonAffected(i)) { -// out.write(""); -// } else if (this.pedigree.isNthPersonParentOfAffected(i)) { -// out.write(""); -// } else { -// out.write(""); -// } -// out.write("\n"); -// } -// out.write("
" + fam + "" + id + "" + id + "" + id + "" + fathID + "" + mothID + "" -// + sex + "" + disease + "
\n"); -// out.write("
\n"); -// } -// } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputFormat.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputFormat.java deleted file mode 100644 index b0d7bbaaf..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputFormat.java +++ /dev/null @@ -1,31 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -/** - * Enum for representing the desired format of the output. - * - * @author Jules Jacobsen - */ -public enum OutputFormat { - - HTML("html"), - VCF("vcf"), - TSV_GENE("genes.tsv"), - TSV_VARIANT("variants.tsv"), - PHENOGRID("phenogrid.json"); - - private final String fileExtension; - - private OutputFormat(String fileExtension) { - this.fileExtension = fileExtension; - } - - public String getFileExtension() { - return fileExtension; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputSettings.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputSettings.java deleted file mode 100644 index 325b6b068..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputSettings.java +++ /dev/null @@ -1,24 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import java.util.Set; - -/** - * - * @author Jules Jacobsen - */ -public interface OutputSettings { - - public boolean outputPassVariantsOnly(); - - public int getNumberOfGenesToShow(); - - public Set getOutputFormats(); - - public String getOutputPrefix(); - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputSettingsImp.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputSettingsImp.java deleted file mode 100644 index ccf4c285d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/OutputSettingsImp.java +++ /dev/null @@ -1,133 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import com.fasterxml.jackson.annotation.JsonProperty; -import com.fasterxml.jackson.annotation.JsonSetter; -import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; -import java.util.EnumSet; -import java.util.Objects; -import java.util.Set; - -/** - * Simple bean for storing output format options. - * - * @author Jules Jacobsen - */ -@JsonDeserialize(builder = OutputSettingsBuilder.class) -public class OutputSettingsImp implements OutputSettings { - - @JsonProperty - private final boolean outputPassVariantsOnly; - @JsonProperty("numGenes") - private final int numberOfGenesToShow; - private final String outputPrefix; - private final Set outputFormats; - - private OutputSettingsImp(OutputSettingsBuilder builder) { - this.outputPassVariantsOnly = builder.outputPassVariantsOnly; - this.numberOfGenesToShow = builder.numberOfGenesToShow; - this.outputPrefix = builder.outputPrefix; - this.outputFormats = builder.outputFormats; - } - - public static class OutputSettingsBuilder { - - private boolean outputPassVariantsOnly = false; - private int numberOfGenesToShow = 0; - private String outputPrefix = ""; - private Set outputFormats = EnumSet.of(OutputFormat.HTML); - - public OutputSettingsImp build() { - return new OutputSettingsImp(this); - } - - @JsonSetter - public OutputSettingsBuilder outputPassVariantsOnly(boolean outputPassVariantsOnly) { - this.outputPassVariantsOnly = outputPassVariantsOnly; - return this; - } - - @JsonSetter(value = "numGenes") - public OutputSettingsBuilder numberOfGenesToShow(int numberOfGenesToShow) { - this.numberOfGenesToShow = numberOfGenesToShow; - return this; - } - - @JsonSetter - public OutputSettingsBuilder outputPrefix(String outputPrefix) { - this.outputPrefix = outputPrefix; - return this; - } - - @JsonSetter - public OutputSettingsBuilder outputFormats(Set outputFormats) { - this.outputFormats = outputFormats; - return this; - } - } - - @Override - public boolean outputPassVariantsOnly() { - return outputPassVariantsOnly; - } - - @Override - public int getNumberOfGenesToShow() { - return numberOfGenesToShow; - } - - @Override - public Set getOutputFormats() { - return outputFormats; - } - - @Override - public String getOutputPrefix() { - return outputPrefix; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 79 * hash + (this.outputPassVariantsOnly ? 1 : 0); - hash = 79 * hash + this.numberOfGenesToShow; - hash = 79 * hash + Objects.hashCode(this.outputPrefix); - hash = 79 * hash + Objects.hashCode(this.outputFormats); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final OutputSettingsImp other = (OutputSettingsImp) obj; - if (this.outputPassVariantsOnly != other.outputPassVariantsOnly) { - return false; - } - if (this.numberOfGenesToShow != other.numberOfGenesToShow) { - return false; - } - if (!Objects.equals(this.outputPrefix, other.outputPrefix)) { - return false; - } - if (!Objects.equals(this.outputFormats, other.outputFormats)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "OutputOptions{" + "outputPassVariantsOnly=" + outputPassVariantsOnly + ", numberOfGenesToShow=" + numberOfGenesToShow + ", outputPrefix=" + outputPrefix + ", outputFormats=" + outputFormats + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/PhenogridWriter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/PhenogridWriter.java deleted file mode 100644 index 81af6d51b..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/PhenogridWriter.java +++ /dev/null @@ -1,82 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.SerializationFeature; -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.prioritisers.HiPhivePriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.writers.phenogrid.PhenoGrid; -import de.charite.compbio.exomiser.core.writers.phenogrid.PhenoGridAdaptor; -import java.io.BufferedWriter; -import java.io.IOException; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.List; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class PhenogridWriter implements ResultsWriter { - - private static final Logger logger = LoggerFactory.getLogger(PhenogridWriter.class); - private static final OutputFormat OUTPUT_FORMAT = OutputFormat.PHENOGRID; - - @Override - public void writeFile(Analysis analysis, OutputSettings settings) { - String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); - Path outFile = Paths.get(outFileName); - - try (BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - - writer.write(writeString(analysis, settings)); - - } catch (IOException ex) { - logger.error("Unable to write results to file {}.", outFileName, ex); - } - logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); - - } - - @Override - public String writeString(Analysis analysis, OutputSettings settings) { - SampleData sampleData = analysis.getSampleData(); - List passedGenes = ResultsWriterUtils.getMaxPassedGenes(sampleData.getGenes(), settings.getNumberOfGenesToShow()); - List hiPhiveResults = new ArrayList<>(); - for (Gene gene : passedGenes) { - if (gene.getPriorityResults().containsKey(PriorityType.HIPHIVE_PRIORITY)) { - HiPhivePriorityResult hiPhiveResult = (HiPhivePriorityResult) gene.getPriorityResult(PriorityType.HIPHIVE_PRIORITY); - hiPhiveResults.add(hiPhiveResult); - } - } - PhenoGridAdaptor phenoGridAdaptor = new PhenoGridAdaptor(); - PhenoGrid phenogrid = phenoGridAdaptor.makePhenoGridFromHiPhiveResults("hiPhive specified phenotypes", hiPhiveResults) ; - return writePhenoGridAsJson(phenogrid); - } - - private String writePhenoGridAsJson(PhenoGrid phenogrid) { - ObjectMapper mapper = new ObjectMapper(); - mapper.configure(SerializationFeature.INDENT_OUTPUT, false); - mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); - try { - return mapper.writeValueAsString(phenogrid); - } catch (JsonProcessingException ex) { - logger.error("Error mapping PhenoGrid to json", ex); - } - return "Error mapping PhenoGrid to json"; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriter.java deleted file mode 100644 index 51c0af496..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriter.java +++ /dev/null @@ -1,33 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.analysis.Analysis; - -/** - * - * @author Jules Jacobsen - */ -public interface ResultsWriter { - - /** - * Writes the result data out to the file specified in the ExomiserSettings object. - * - * @param analysis - * @param settings - */ - public void writeFile(Analysis analysis, OutputSettings settings); - - /** - * Writes the result data out to a String. - * - * @param analysis - * @param settings - * @return - */ - public String writeString(Analysis analysis, OutputSettings settings); -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriterFactory.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriterFactory.java deleted file mode 100644 index 35ac480dc..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriterFactory.java +++ /dev/null @@ -1,48 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.writers; - -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; -import org.thymeleaf.TemplateEngine; - -/** - * Provides an entry point for getting a ResultsWriter for a specific format. - * - * @author Jules Jacobsen - * @author Manuel Holtgrewe - */ -@Component -public class ResultsWriterFactory { - - @Autowired - private TemplateEngine templateEngine; - - /** - * Build {@link ResultsWriter} for the given {@link OutputFormat}. - * - * @param outputFormat - * the format to use for the output - * @return the constructed {@link ResultsWriter} implementation - */ - public ResultsWriter getResultsWriter(OutputFormat outputFormat) { - switch (outputFormat){ - case HTML: - return new HtmlResultsWriter(templateEngine); - case TSV_GENE: - return new TsvGeneResultsWriter(); - case TSV_VARIANT: - return new TsvVariantResultsWriter(); - case VCF: - return new VcfResultsWriter(); - case PHENOGRID: - return new PhenogridWriter(); - default: - return new HtmlResultsWriter(templateEngine); - } - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriterUtils.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriterUtils.java deleted file mode 100644 index 6840f0c3b..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/ResultsWriterUtils.java +++ /dev/null @@ -1,162 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.filters.FilterReport; -import de.charite.compbio.exomiser.core.filters.FilterReportFactory; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.annotation.VariantEffect; - -import java.util.ArrayList; -import java.util.Set; -import java.util.List; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import com.google.common.collect.ImmutableSet; -import de.charite.compbio.exomiser.core.analysis.Analysis; -import java.nio.file.Path; -import java.util.EnumSet; -import java.util.Map; - -/** - * - * @author Jules Jacobsen - */ -public class ResultsWriterUtils { - - private static final Logger logger = LoggerFactory.getLogger(ResultsWriterUtils.class); - - private static final FilterReportFactory filterReportFactory = new FilterReportFactory(); - - private static final String DEFAULT_OUTPUT_DIR = "results"; - - /** - * Determines the correct file extension for a file given what was specified - * in the {@link de.charite.compbio.exomiser.core.ExomiserSettings}. - * - * @param vcfPath - * @param outputPrefix - * @param outputFormat - * @return - */ - public static String makeOutputFilename(Path vcfPath, String outputPrefix, OutputFormat outputFormat) { - if (outputPrefix.isEmpty()) { - String defaultOutputPrefix = String.format("%s/%s-exomiser-results", ResultsWriterUtils.DEFAULT_OUTPUT_DIR, vcfPath.getFileName()); - logger.debug("Output prefix was unspecified. Will write out to: {}", defaultOutputPrefix); - outputPrefix = defaultOutputPrefix; - } - return String.format("%s.%s", outputPrefix, outputFormat.getFileExtension()); - } - - /** - * Make a {@code VariantTypeCounter} object from the list of - * {@code VariantEvaluation}. We use this to print out a table of variant - * class distribution. - * - * @param variantEvaluations - * @return - */ - public static List makeVariantEffectCounters(List variantEvaluations) { - - // all used Jannovar VariantEffects - final Set variantEffects = ImmutableSet.of(VariantEffect.FRAMESHIFT_ELONGATION, - VariantEffect.FRAMESHIFT_TRUNCATION, VariantEffect.FRAMESHIFT_VARIANT, - VariantEffect.INTERNAL_FEATURE_ELONGATION, VariantEffect.FEATURE_TRUNCATION, VariantEffect.MNV, - VariantEffect.STOP_GAINED, VariantEffect.STOP_LOST, VariantEffect.START_LOST, - VariantEffect.SPLICE_ACCEPTOR_VARIANT, VariantEffect.SPLICE_DONOR_VARIANT, - VariantEffect.MISSENSE_VARIANT, VariantEffect.INFRAME_INSERTION, - VariantEffect.DISRUPTIVE_INFRAME_INSERTION, VariantEffect.INFRAME_DELETION, - VariantEffect.DISRUPTIVE_INFRAME_DELETION, VariantEffect.THREE_PRIME_UTR_TRUNCATION, - VariantEffect.SPLICE_REGION_VARIANT, VariantEffect.STOP_RETAINED_VARIANT, - VariantEffect.INITIATOR_CODON_VARIANT, VariantEffect.SYNONYMOUS_VARIANT, - VariantEffect.FIVE_PRIME_UTR_VARIANT, VariantEffect.THREE_PRIME_UTR_VARIANT, - VariantEffect.CODING_TRANSCRIPT_INTRON_VARIANT, VariantEffect.NON_CODING_TRANSCRIPT_EXON_VARIANT, - VariantEffect.NON_CODING_TRANSCRIPT_INTRON_VARIANT, VariantEffect.UPSTREAM_GENE_VARIANT, - VariantEffect.DOWNSTREAM_GENE_VARIANT, VariantEffect.INTERGENIC_VARIANT); - - VariantEffectCounter variantTypeCounter = makeVariantEffectCounter(variantEvaluations); - final List> freqMaps = variantTypeCounter.getFrequencyMap(variantEffects); - - int numIndividuals = 0; - if (!variantEvaluations.isEmpty()) { - numIndividuals = variantEvaluations.get(0).getNumberOfIndividuals(); - } - - List result = new ArrayList<>(); - Set effects = EnumSet.noneOf(VariantEffect.class); - for (int sampleIdx = 0; sampleIdx < numIndividuals; ++sampleIdx) { - effects.addAll(freqMaps.get(sampleIdx).keySet()); - } - if (variantEvaluations.isEmpty()) { - effects.addAll(variantEffects); - } - - for (VariantEffect effect : effects) { - List typeSpecificCounts = new ArrayList<>(); - for (int sampleIdx = 0; sampleIdx < numIndividuals; ++sampleIdx) { - typeSpecificCounts.add(freqMaps.get(sampleIdx).get(effect)); - } - result.add(new VariantEffectCount(effect, typeSpecificCounts)); - } - - return result; - } - - protected static VariantEffectCounter makeVariantEffectCounter(List variantEvaluations) { - if (variantEvaluations.isEmpty()) { - return new VariantEffectCounter(0); - } - - int numIndividuals = variantEvaluations.get(0).getNumberOfIndividuals(); - VariantEffectCounter effectCounter = new VariantEffectCounter(numIndividuals); - - for (VariantEvaluation variantEvaluation : variantEvaluations) { - effectCounter.put(variantEvaluation); - } - return effectCounter; - } - - public static List makeFilterReports(Analysis analysis) { - return filterReportFactory.makeFilterReports(analysis); - } - - public static List getMaxPassedGenes(List genes, int maxGenes) { - List passedGenes = getPassedGenes(genes); - if (maxGenes == 0) { - logger.info("Maximum gene limit set to {} - Returning all {} genes which have passed filtering.", maxGenes, passedGenes.size()); - return passedGenes; - } - return getMaxGenes(passedGenes, maxGenes); - } - - public static List getPassedGenes(List genes) { - List passedGenes = new ArrayList<>(); - for (Gene gene : genes) { - if (gene.passedFilters()) { - passedGenes.add(gene); - } - } - logger.info("{} of {} genes passed filters", passedGenes.size(), genes.size()); - return passedGenes; - } - - private static List getMaxGenes(List genes, int maxGenes) { - List passedGenes = new ArrayList<>(); - int genesShown = 0; - for (Gene gene : genes) { - if (genesShown < maxGenes) { - passedGenes.add(gene); - genesShown++; - } - } - logger.info("Maximum gene limit set to {} - Returning first {} of {} genes which have passed filtering.", maxGenes, maxGenes, genes.size()); - return passedGenes; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/TsvGeneResultsWriter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/TsvGeneResultsWriter.java deleted file mode 100644 index 644955c74..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/TsvGeneResultsWriter.java +++ /dev/null @@ -1,135 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.prioritisers.HiPhivePriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.prioritisers.PriorityResult; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.prioritisers.ExomeWalkerPriorityResult; - -import java.io.BufferedWriter; -import java.io.IOException; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.Locale; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class TsvGeneResultsWriter implements ResultsWriter { - - private static final Logger logger = LoggerFactory.getLogger(TsvGeneResultsWriter.class); - - private static final OutputFormat OUTPUT_FORMAT = OutputFormat.TSV_GENE; - private static final String HEADER_LINE = "#GENE_SYMBOL ENTREZ_GENE_ID " - + "EXOMISER_GENE_PHENO_SCORE EXOMISER_GENE_VARIANT_SCORE EXOMISER_GENE_COMBINED_SCORE " - + "HUMAN_PHENO_SCORE MOUSE_PHENO_SCORE FISH_PHENO_SCORE WALKER_SCORE " - + "PHIVE_ALL_SPECIES_SCORE OMIM_SCORE MATCHES_CANDIDATE_GENE HUMAN_PHENO_EVIDENCE MOUSE_PHENO_EVIDENCE FISH_PHENO_EVIDENCE HUMAN_PPI_EVIDENCE MOUSE_PPI_EVIDENCE FISH_PPI_EVIDENCE\n"; - - public TsvGeneResultsWriter() { - Locale.setDefault(Locale.UK); - } - - @Override - public void writeFile(Analysis analysis, OutputSettings settings) { - String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); - Path outFile = Paths.get(outFileName); - - try (BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - writer.write(writeString(analysis, settings)); - } catch (IOException ex) { - logger.error("Unable to write results to file {}.", outFileName, ex); - } - logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); - - } - - @Override - public String writeString(Analysis analysis, OutputSettings settings) { - StringBuilder stringBuilder = new StringBuilder(); - stringBuilder.append(HEADER_LINE); - - SampleData sampleData = analysis.getSampleData(); - for (Gene gene : sampleData.getGenes()) { - if (gene.passedFilters()) { - stringBuilder.append(makeGeneLine(gene)); - } - } - return stringBuilder.toString(); - } - - /** - * Writes out the gene data in a tab delimited string ending in a newline - * character. - * - * @param gene - * @param candidateGene - * @return - */ - protected String makeGeneLine(Gene gene) { - float humanPhenScore = 0f; - float mousePhenScore = 0f; - float fishPhenScore = 0f; - float rawWalkerScore = 0f; - float walkerScaledMaxScore = 0f; - float walkerScore = 0f; - float phiveAllSpeciesScore = 0f; - float omimScore = 0f; - String phenoEvidence = ""; - //flag to indicate if the gene matches the candidate gene specified by the user - int matchesCandidateGene = 0; - - // priority score calculation - for (PriorityResult prioritiserResult : gene.getPriorityResults().values()) { - PriorityType type = prioritiserResult.getPriorityType(); - if (type == PriorityType.HIPHIVE_PRIORITY) { - HiPhivePriorityResult phenoScore = (HiPhivePriorityResult) prioritiserResult; - phiveAllSpeciesScore = phenoScore.getScore(); - humanPhenScore = phenoScore.getHumanScore(); - mousePhenScore = phenoScore.getMouseScore(); - fishPhenScore = phenoScore.getFishScore(); - walkerScore = phenoScore.getWalkerScore(); - phenoEvidence = phenoScore.getPhenotypeEvidenceText(); - if (phenoScore.isCandidateGeneMatch()) { - matchesCandidateGene = 1; - } - } else if (type == PriorityType.OMIM_PRIORITY) { - omimScore = prioritiserResult.getScore(); - } else if (type == PriorityType.EXOMEWALKER_PRIORITY) { - ExomeWalkerPriorityResult wandererScore = (ExomeWalkerPriorityResult) prioritiserResult; - walkerScore = prioritiserResult.getScore(); - rawWalkerScore = (float) wandererScore.getRawScore(); - walkerScaledMaxScore = (float) wandererScore.getScaledScore(); - } - } - - return String.format("%s\t%d\t%.4f\t%.4f\t%.4f\t%.4f\t%.4f\t%.4f\t%.4f\t%.4f\t%.4f\t%d\t%s\n", - gene.getGeneSymbol(), - gene.getEntrezGeneID(), - gene.getPriorityScore(), - gene.getFilterScore(), - gene.getCombinedScore(), - humanPhenScore, - mousePhenScore, - fishPhenScore, - //rawWalkerScore, - //walkerScaledMaxScore, - walkerScore, - phiveAllSpeciesScore, - omimScore, - matchesCandidateGene, - phenoEvidence); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/TsvVariantResultsWriter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/TsvVariantResultsWriter.java deleted file mode 100644 index 960b3749b..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/TsvVariantResultsWriter.java +++ /dev/null @@ -1,287 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.writers; - -import com.google.common.base.Joiner; -import de.charite.compbio.exomiser.core.analysis.Analysis; - -import java.io.IOException; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.text.DecimalFormat; -import java.util.ArrayList; -import java.util.List; -import java.util.Set; - -import org.apache.commons.csv.CSVFormat; -import org.apache.commons.csv.CSVPrinter; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - - -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; - -import static de.charite.compbio.exomiser.core.model.frequency.FrequencySource.*; - -import de.charite.compbio.exomiser.core.model.pathogenicity.BasePathogenicityScore; -import de.charite.compbio.jannovar.annotation.Annotation; -import de.charite.compbio.jannovar.annotation.AnnotationLocation; -import htsjdk.variant.variantcontext.VariantContext; - -import java.nio.charset.StandardCharsets; -import java.nio.file.Files; -import java.util.Collections; - -import java.util.Locale; - -import org.thymeleaf.util.StringUtils; - -/** - * @author Max Schubach - */ -public class TsvVariantResultsWriter implements ResultsWriter { - - private static final Logger logger = LoggerFactory.getLogger(TsvGeneResultsWriter.class); - - private static final OutputFormat OUTPUT_FORMAT = OutputFormat.TSV_VARIANT; - - private final CSVFormat format = CSVFormat - .newFormat('\t') - .withQuote(null) - .withRecordSeparator("\n") - .withIgnoreSurroundingSpaces(true) - .withHeader("#CHROM", "POS", "REF", "ALT", "QUAL", "FILTER", "GENOTYPE", "COVERAGE", "FUNCTIONAL_CLASS", "HGVS", "EXOMISER_GENE", - "CADD(>0.483)", "POLYPHEN(>0.956|>0.446)", "MUTATIONTASTER(>0.94)", "SIFT(<0.06)", "REMM", - "DBSNP_ID", "MAX_FREQUENCY", "DBSNP_FREQUENCY", "EVS_EA_FREQUENCY", "EVS_AA_FREQUENCY", - "EXAC_AFR_FREQ", "EXAC_AMR_FREQ", "EXAC_EAS_FREQ", "EXAC_FIN_FREQ", "EXAC_NFE_FREQ", "EXAC_SAS_FREQ", "EXAC_OTH_FREQ", - "EXOMISER_VARIANT_SCORE", "EXOMISER_GENE_PHENO_SCORE", "EXOMISER_GENE_VARIANT_SCORE", "EXOMISER_GENE_COMBINED_SCORE"); - - private final DecimalFormat formatter = new DecimalFormat(".##"); - - public TsvVariantResultsWriter() { - Locale.setDefault(Locale.UK); - } - - @Override - public void writeFile(Analysis analysis, OutputSettings settings) { - String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); - Path outFile = Paths.get(outFileName); - try (CSVPrinter printer = new CSVPrinter(Files.newBufferedWriter(outFile, StandardCharsets.UTF_8), format)) { - writeData(analysis, settings.outputPassVariantsOnly(), printer); - } catch (IOException ex) { - logger.error("Unable to write results to file {}.", outFileName, ex); - } - logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); - - } - - @Override - public String writeString(Analysis analysis, OutputSettings settings) { - StringBuilder output = new StringBuilder(); - try (CSVPrinter printer = new CSVPrinter(output, format)) { - writeData(analysis, settings.outputPassVariantsOnly(), printer); - } catch (IOException ex) { - logger.error("Unable to write results to string {}.", output, ex); - } - return output.toString(); - } - - private void writeData(Analysis analysis, boolean writeOnlyPassVariants, CSVPrinter printer) throws IOException { - SampleData sampleData = analysis.getSampleData(); - if (writeOnlyPassVariants) { - logger.info("Writing out only PASS variants"); - for (Gene gene : sampleData.getGenes()) { - writeOnlyPassVariantsOfGene(gene, printer); - } - } else { - for (Gene gene : sampleData.getGenes()) { - writeAllVariantsOfGene(gene, printer); - } - } - } - - private void writeOnlyPassVariantsOfGene(Gene gene, CSVPrinter printer) throws IOException { - for (VariantEvaluation ve : gene.getPassedVariantEvaluations()) { - List record = getRecordOfVariant(ve, gene); - printer.printRecord(record); - } - } - - private void writeAllVariantsOfGene(Gene gene, CSVPrinter printer) throws IOException { - for (VariantEvaluation ve : gene.getVariantEvaluations()) { - List record = getRecordOfVariant(ve, gene); - printer.printRecord(record); - } - } - - private List getRecordOfVariant(VariantEvaluation ve, Gene gene) { - List record = new ArrayList<>(); - VariantContext variantContext = ve.getVariantContext(); - // CHROM - record.add(variantContext.getContig()); - // POS - record.add(variantContext.getStart()); - // REF - record.add(variantContext.getReference().getDisplayString()); - // ALT - record.add(variantContext.getAlternateAllele(ve.getAltAlleleId()).getDisplayString()); - // QUAL - record.add(formatter.format(ve.getPhredScore())); - // FILTER - record.add(makeFiltersField(ve)); - // GENOTYPE - record.add(ve.getGenotypeAsString()); - // COVERAGE - record.add(variantContext.getCommonInfo().getAttributeAsString("DP", "0")); - // FUNCTIONAL_CLASS - // FIXME: use new terms (use .toSequenceOntologyTerm() instead)! - //record.add(ve.getVariantEffect().getLegacyTerm()); - record.add(ve.getVariantEffect().getSequenceOntologyTerm()); - // HGVS - record.add(getRepresentativeAnnotation(ve.getAnnotations())); - // EXOMISER_GENE - record.add(ve.getGeneSymbol()); - // CADD - record.add(getPatScore(ve.getPathogenicityData().getCaddScore())); - // POLYPHEN - record.add(getPatScore(ve.getPathogenicityData().getPolyPhenScore())); - // MUTATIONTASTER - record.add(getPatScore(ve.getPathogenicityData().getMutationTasterScore())); - // SIFT - record.add(getPatScore(ve.getPathogenicityData().getSiftScore())); - //MNCDS - record.add(getPatScore(ve.getPathogenicityData().getRemmScore())); - // "DBSNP_ID", "MAX_FREQUENCY", "DBSNP_FREQUENCY", "EVS_EA_FREQUENCY", "EVS_AA_FREQUENCY", - // "EXAC_AFR_FREQ", "EXAC_AMR_FREQ", "EXAC_EAS_FREQ", "EXAC_FIN_FREQ", "EXAC_NFE_FREQ", "EXAC_SAS_FREQ", "EXAC_OTH_FREQ", - addFrequencyData(ve.getFrequencyData(), record); - // EXOMISER_VARIANT_SCORE - record.add(dotIfNull(ve.getVariantScore())); - // EXOMISER_GENE_PHENO_SCORE - record.add(dotIfNull(gene.getPriorityScore())); - // EXOMISER_GENE_VARIANT_SCORE - record.add(dotIfNull(gene.getFilterScore())); - // EXOMISER_GENE_COMBINED_SCORE - record.add(dotIfNull(gene.getCombinedScore())); - return record; - } - - private void addFrequencyData(FrequencyData frequencyData, List record) { - if (frequencyData == null) { - frequencyData = new FrequencyData(null, Collections.EMPTY_SET); - } - // DBSNP_ID - record.add(dotIfNull(frequencyData.getRsId())); - // MAX_FREQUENCY - record.add(dotIfNull(frequencyData.getMaxFreq())); - // Don't change the order of these - it's necessary for the data to end up in the correct column - FrequencySource[] experimentalFrequencySources = { - // "DBSNP_FREQUENCY", - THOUSAND_GENOMES, - // "EVS_EA_FREQUENCY", "EVS_AA_FREQUENCY", - ESP_EUROPEAN_AMERICAN, ESP_AFRICAN_AMERICAN, - // "EXAC_AFR_FREQ", "EXAC_AMR_FREQ", "EXAC_EAS_FREQ", "EXAC_FIN_FREQ", "EXAC_NFE_FREQ", "EXAC_SAS_FREQ", "EXAC_OTH_FREQ", - EXAC_AFRICAN_INC_AFRICAN_AMERICAN, EXAC_AMERICAN, EXAC_EAST_ASIAN, EXAC_FINNISH, EXAC_NON_FINNISH_EUROPEAN, EXAC_SOUTH_ASIAN, EXAC_OTHER}; - for (FrequencySource source : experimentalFrequencySources) { - record.add(dotIfFrequencyNull(frequencyData.getFrequencyForSource(source))); - } - } - - private Object dotIfNull(Object o) { - if (o == null) { - return "."; - } else { - return o; - } - } - - private Object dotIfFrequencyNull(Frequency frequency) { - if (frequency == null) { - return "."; - } else { - return frequency.getFrequency(); - } - } - - private Object getPatScore(BasePathogenicityScore score) { - if (score == null) { - return "."; - } else { - return score.getScore(); - } - } - - protected String makeFiltersField(VariantEvaluation variantEvaluation) { - switch (variantEvaluation.getFilterStatus()) { - case FAILED: - return formatFailedFilters(variantEvaluation.getFailedFilterTypes()); - case PASSED: - return "PASS"; - case UNFILTERED: - return "."; - default: - return "."; - } - - } - - protected String formatFailedFilters(Set failedFilters) { - StringBuilder stringBuilder = new StringBuilder(); - for (FilterType filterType : failedFilters) { - stringBuilder.append(filterType.toString()).append(";"); - } - // remove the final semi-colon - int sbLength = stringBuilder.length(); - return stringBuilder.substring(0, sbLength - 1); - } - - /** - * @return An annotation for a single transcript, representing one of the - * annotations with the most pathogenic annotation. - */ - private String getRepresentativeAnnotation(List annotations) { - if (annotations.isEmpty()) { - return "?"; - } - - Annotation anno = annotations.get(0); - - String exonIntron = null; - AnnotationLocation annotationLocation = anno.getAnnoLoc(); - if (annotationLocation != null) { - AnnotationLocation.RankType rankType = annotationLocation.getRankType(); - if (rankType == AnnotationLocation.RankType.EXON) { - exonIntron = StringUtils.concat("exon", annotationLocation.getRank() + 1); - } else if (rankType == AnnotationLocation.RankType.INTRON) { - exonIntron = StringUtils.concat("intron", annotationLocation.getRank() + 1); - } - } - - final Joiner joiner = Joiner.on(":").skipNulls(); - return joiner.join(anno.getGeneSymbol(), anno.getTranscript().getAccession(), exonIntron, anno.getCDSNTChangeStr(), - anno.getProteinChangeStr()); - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VariantEffectCount.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VariantEffectCount.java deleted file mode 100644 index a5a7f1d8a..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VariantEffectCount.java +++ /dev/null @@ -1,37 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import java.util.List; - -import de.charite.compbio.jannovar.annotation.VariantEffect; - -/** - * - * @author Jules Jacobsen - */ -public class VariantEffectCount { - private final VariantEffect variantEffect; - private final List sampleVariantEffectCounts; - - public VariantEffectCount(VariantEffect variantType, List sampleVariantTypeCounts) { - this.variantEffect = variantType; - this.sampleVariantEffectCounts = sampleVariantTypeCounts; - } - - public VariantEffect getVariantType() { - return variantEffect; - } - - public List getSampleVariantTypeCounts() { - return sampleVariantEffectCounts; - } - - @Override - public String toString() { - return variantEffect + "=" + sampleVariantEffectCounts; - } -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VcfResultsWriter.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VcfResultsWriter.java deleted file mode 100644 index bf9633cf4..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VcfResultsWriter.java +++ /dev/null @@ -1,280 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.writers; - -import com.google.common.collect.ArrayListMultimap; -import com.google.common.collect.Lists; -import com.google.common.collect.Multimap; -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.htsjdk.InfoFields; -import de.charite.compbio.jannovar.htsjdk.VariantContextWriterConstructionHelper; -import htsjdk.variant.variantcontext.VariantContext; -import htsjdk.variant.variantcontext.VariantContextBuilder; -import htsjdk.variant.variantcontext.writer.VariantContextWriter; -import htsjdk.variant.vcf.*; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.io.ByteArrayOutputStream; -import java.nio.charset.StandardCharsets; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.*; - -import static java.util.stream.Collectors.toList; -import static java.util.stream.Collectors.toSet; - -// TODO(holtgrew): Write out to sorting VariantContextWriter? -/** - * Generate results in VCF format using HTS-JDK. - * - * @see VCF - * Standard - * @author Jules Jacobsen - * @author Manuel Holtgrewe - */ -public class VcfResultsWriter implements ResultsWriter { - - private static final Logger logger = LoggerFactory.getLogger(VcfResultsWriter.class); - - private static final OutputFormat OUTPUT_FORMAT = OutputFormat.VCF; - - /** - * Initialize the object, given the original {@link VCFFileReader} from the - * input. - * - * @param vcfHeader original {@link VCFHeader} from the input, used for - * generating the output header - */ - public VcfResultsWriter() { - Locale.setDefault(Locale.UK); - } - - @Override - public void writeFile(Analysis analysis, OutputSettings settings) { - // create a VariantContextWriter writing to the output file path - String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); - Path outFile = Paths.get(outFileName); - SampleData sampleData = analysis.getSampleData(); - try (VariantContextWriter writer = VariantContextWriterConstructionHelper.openVariantContextWriter(sampleData.getVcfHeader(), - outFile.toString(), - InfoFields.BOTH, - getAdditionalHeaderLines())) { - writeData(sampleData, settings.outputPassVariantsOnly(), writer); - } - logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); - } - - @Override - public String writeString(Analysis analysis, OutputSettings settings) { - // create a VariantContextWriter writing to a buffer - ByteArrayOutputStream baos = new ByteArrayOutputStream(); - SampleData sampleData = analysis.getSampleData(); - try (VariantContextWriter writer = VariantContextWriterConstructionHelper.openVariantContextWriter(sampleData.getVcfHeader(), - baos, - InfoFields.BOTH, - getAdditionalHeaderLines())) { - writeData(sampleData, settings.outputPassVariantsOnly(), writer); - } - logger.info("{} results written to string buffer", OUTPUT_FORMAT); - return new String(baos.toByteArray(), StandardCharsets.UTF_8); - } - - private void writeData(SampleData sampleData, boolean writeOnlyPassVariants, VariantContextWriter writer) { - writeUnannotatedVariants(sampleData, writer); - // actually write the data and close writer again - if (writeOnlyPassVariants) { - logger.info("Writing out only PASS variants"); - writeOnlyPassSampleData(sampleData, writer); - } else { - writeAllSampleData(sampleData, writer); - } - } - - private void writeUnannotatedVariants(SampleData sampleData, VariantContextWriter writer) { - List updatedRecords = updateGeneVariantRecords(null, sampleData.getUnAnnotatedVariantEvaluations()); - updatedRecords.forEach(record-> writer.add(record)); - } - - private void writeOnlyPassSampleData(SampleData sampleData, VariantContextWriter writer) { - for (Gene gene : sampleData.getGenes()) { - List updatedRecords = updateGeneVariantRecords(gene, gene.getPassedVariantEvaluations()); - updatedRecords.forEach(record-> writer.add(record)); - } - } - - /** - * Write the sampleData as VCF to writer. - * - * writer is already completely initialized, including all - * headers, so data is written out directly for each - * {@link VariantEvalution} in sampleData. - * - * @param sampleData data set to write out - * @param writer writer to write to - */ - private void writeAllSampleData(SampleData sampleData, VariantContextWriter writer) { - for (Gene gene : sampleData.getGenes()) { - logger.debug("updating variant records for gene {}", gene); - List updatedRecords = updateGeneVariantRecords(gene, gene.getVariantEvaluations()); - updatedRecords.forEach(record-> writer.add(record)); - } - } - - //this needs a MultiMap (see InheritanceModeAnalyser for this) - private List updateGeneVariantRecords(Gene gene, List variants) { - if (variants.isEmpty()) { - return Collections.emptyList(); - } -// maybe check if the variant is multi-allelic first? - Multimap variantContextToEvaluations = mapVariantEvaluationsToVariantContextString(variants); - return variantContextToEvaluations.asMap() - .values() - .stream() - .map(variantEvaluations -> updateRecord(Lists.newArrayList(variantEvaluations), gene)) - .collect(toList()); - } - - private Multimap mapVariantEvaluationsToVariantContextString(List variantEvaluations) { - //using ArrayListMultimap is important as the order of the values (alleles) must be preserved so that they match the order listed in the ALT fildl - ArrayListMultimap geneVariants = ArrayListMultimap.create(); - for (VariantEvaluation variantEvaluation : variantEvaluations) { - geneVariants.put(variantContextKeyValue(variantEvaluation.getVariantContext()), variantEvaluation); - } - return geneVariants; - } - - /** - * A {@link VariantContext} cannot be used directly as a key in a Map or put into a Set as it does not override equals or hashCode. - * Also simply using toString isn't an option as the compatible variants returned from the - * {@link de.charite.compbio.exomiser.core.analysis.util.InheritanceModeAnalyser#inheritanceCompatibilityChecker} - * are different instances and have had their genotype strings changed. This method solves these problems. - */ - private String variantContextKeyValue(VariantContext variantContext) { - //using StringBuilder instead of String.format as the performance is better and we're going to be doing this for every variant in the VCF - // chr10-123256215-T*-[G, A] - // chr5-11-AC*-[AT] - StringBuilder keyValueBuilder = new StringBuilder(); - keyValueBuilder.append(variantContext.getContig()).append('-'); - keyValueBuilder.append(variantContext.getStart()).append('-'); - keyValueBuilder.append(variantContext.getReference()).append('-'); - keyValueBuilder.append(variantContext.getAlternateAlleles()); - return keyValueBuilder.toString(); - } - - private VariantContext updateRecord(List variantEvaluations, Gene gene) { - // create a new VariantContextBuilder, based on the original line - // n.b. variantContexts with alternative alleles will be shared between - // the alternative allele variant objects - Exomiser works on a 1 Variant = 1 Allele principle - VariantEvaluation variantEvaluation = variantEvaluations.get(0); - - VariantContext variantContext = variantEvaluation.getVariantContext(); - VariantContextBuilder builder = new VariantContextBuilder(variantContext); - // update filter and info fields and write out to writer. - updateFilterField(builder, variantEvaluation); - updateInfoField(builder, variantEvaluations, gene); - return builder.make(); - } - - /** - * Update the FILTER field of builder given the - * {@link VariantEvaluation}. - */ - private void updateFilterField(VariantContextBuilder builder, VariantEvaluation ve) { - switch (ve.getFilterStatus()) { - case FAILED: - updateFailedFilters(builder, ve.getFailedFilterTypes()); - break; - case PASSED: - builder.filter("PASS"); - break; - case UNFILTERED: - default: - builder.filter("."); - break; - } - } - - /** - * Write all failed filter types from failedFilterTypes into - * builder. - */ - private void updateFailedFilters(VariantContextBuilder builder, Set failedFilterTypes) { - Set failedFilters = failedFilterTypes.stream().map(FilterType::toString).collect(toSet()); - builder.filters(failedFilters); - } - - /** - * Update the INFO field of builder given the - * {@link VariantEvaluation} and gene. - */ - private void updateInfoField(VariantContextBuilder builder, List variantEvaluations, Gene gene) { - if (!variantEvaluations.isEmpty() && gene != null) { - builder.attribute("EXOMISER_GENE", gene.getGeneSymbol()); - builder.attribute("EXOMISER_GENE_COMBINED_SCORE", gene.getCombinedScore()); - builder.attribute("EXOMISER_GENE_PHENO_SCORE", gene.getPriorityScore()); - builder.attribute("EXOMISER_GENE_VARIANT_SCORE", gene.getFilterScore()); - builder.attribute("EXOMISER_VARIANT_SCORE", buildVariantScore(variantEvaluations)); //this needs a list of VariantEvaluations to concatenate the fields from in Allele order -// builder.attribute("EXOMISER_VARIANT_EFFECT", ve.getVariantEffect()); - } else { - builder.attribute("EXOMISER_WARNING", "VARIANT_NOT_ANALYSED_NO_GENE_ANNOTATIONS"); - } - } - - private String buildVariantScore(List variantEvaluations) { - if (variantEvaluations.size() == 1) { - return String.valueOf(variantEvaluations.get(0).getVariantScore()); - } - StringBuilder variantScoreBuilder = new StringBuilder(); - variantScoreBuilder.append(variantEvaluations.get(0).getVariantScore()); - for (int i = 1; i < variantEvaluations.size(); i++) { - variantScoreBuilder.append(',').append(variantEvaluations.get(i).getVariantScore()); - } - return variantScoreBuilder.toString(); - } - - /** - * @return list of additional {@link VCFHeaderLine}s to write out, - * explaining the Jannovar and Exomiser INFO and FILTER fields - */ - private List getAdditionalHeaderLines() { - List lines = new ArrayList<>(); - - // add INFO descriptions - lines.add(new VCFInfoHeaderLine("EXOMISER_GENE", 1, VCFHeaderLineType.String, "Exomiser gene")); - lines.add(new VCFInfoHeaderLine("EXOMISER_VARIANT_SCORE", 1, VCFHeaderLineType.Float, "Exomiser variant score")); - lines.add(new VCFInfoHeaderLine("EXOMISER_GENE_PHENO_SCORE", 1, VCFHeaderLineType.Float, "Exomiser gene phenotype score")); - lines.add(new VCFInfoHeaderLine("EXOMISER_GENE_VARIANT_SCORE", 1, VCFHeaderLineType.Float, "Exomiser gene variant score")); - lines.add(new VCFInfoHeaderLine("EXOMISER_GENE_COMBINED_SCORE", 1, VCFHeaderLineType.Float, "Exomiser gene combined")); - lines.add(new VCFInfoHeaderLine("EXOMISER_WARNING", 1, VCFHeaderLineType.String, "Exomiser gene")); - - // add FILTER descriptions - for (FilterType ft : FilterType.values()) { - lines.add(new VCFFilterHeaderLine(ft.name(), ft.toString())); - } - - return lines; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGrid.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGrid.java deleted file mode 100644 index 641a9dfdc..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGrid.java +++ /dev/null @@ -1,39 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import com.fasterxml.jackson.annotation.JsonProperty; -import java.util.List; - -/** - * Used for storing results of a phenotypic analysis of a sample against a set - * of input phenotypes. This is used to output json for use by the Monarch - * Phenogrid JavaScript widget. - * - * @author Jules Jacobsen - */ -public class PhenoGrid { - - private final PhenoGridQueryTerms phenoGridQueryTerms; - - private final List phenoGridMatchGroups; - - public PhenoGrid(PhenoGridQueryTerms phenoGridQueryTerms, List phenoGridMatchGroups) { - this.phenoGridQueryTerms = phenoGridQueryTerms; - this.phenoGridMatchGroups = phenoGridMatchGroups; - } - - @JsonProperty("input_terms") - public PhenoGridQueryTerms getPhenoGridQueryTerms() { - return phenoGridQueryTerms; - } - - @JsonProperty("matches") - public List getPhenoGridMatchGroups() { - return phenoGridMatchGroups; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridAdaptor.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridAdaptor.java deleted file mode 100644 index edd0f8e74..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridAdaptor.java +++ /dev/null @@ -1,137 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import de.charite.compbio.exomiser.core.model.DiseaseModel; -import de.charite.compbio.exomiser.core.model.GeneModel; -import de.charite.compbio.exomiser.core.model.Model; -import de.charite.compbio.exomiser.core.model.Organism; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import de.charite.compbio.exomiser.core.prioritisers.HiPhivePriorityResult; -import java.util.ArrayList; -import java.util.Collections; -import java.util.Comparator; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Makes a Phenogrid from a set of HiPhivePriorityResults - * @author Jules Jacobsen - */ -public class PhenoGridAdaptor { - - private static final Logger logger = LoggerFactory.getLogger(PhenoGridAdaptor.class); - - protected static final PhenoGridMatchTaxon HUMAN_TAXON = new PhenoGridMatchTaxon("NCBITaxon:9606", Organism.HUMAN.getSpeciesName()); - protected static final PhenoGridMatchTaxon MOUSE_TAXON = new PhenoGridMatchTaxon("NCBITaxon:10090", Organism.MOUSE.getSpeciesName()); - protected static final PhenoGridMatchTaxon FISH_TAXON = new PhenoGridMatchTaxon("NCBITaxon:7955", Organism.FISH.getSpeciesName()); - - public PhenoGrid makePhenoGridFromHiPhiveResults(String phenoGridId, List hiPhiveResults) { - Set phenotypeIds = new LinkedHashSet<>(); - if (!hiPhiveResults.isEmpty()) { - HiPhivePriorityResult result = hiPhiveResults.get(0); - for (PhenotypeTerm phenoTerm : result.getQueryPhenotypeTerms()) { - phenotypeIds.add(phenoTerm.getId()); - } - } - PhenoGridQueryTerms phenoGridQueryTerms = new PhenoGridQueryTerms(phenoGridId, phenotypeIds); - - List diseaseModels = new ArrayList<>(); - List mouseModels = new ArrayList<>(); - List fishModels = new ArrayList<>(); - - for (HiPhivePriorityResult result : hiPhiveResults) { - for (Model model : result.getPhenotypeEvidence()) { - switch(model.getOrganism()) { - case HUMAN: - diseaseModels.add(model); - break; - case MOUSE: - mouseModels.add(model); - break; - case FISH: - fishModels.add(model); - break; - } - } - } - List phenoGridMatchGroups = createPhenogridMatchGroups(phenotypeIds, diseaseModels, mouseModels, fishModels); - - return new PhenoGrid(phenoGridQueryTerms, phenoGridMatchGroups); - } - - private List createPhenogridMatchGroups(Set phenotypeIds, List diseaseModels, List mouseModels, List fishModels) { - List phenoGridMatchGroups = new ArrayList<>(); - - if (!diseaseModels.isEmpty()){ - PhenoGridMatchGroup diseaseMatchGroup = makePhenoGridMatchGroup(HUMAN_TAXON, diseaseModels, phenotypeIds); - phenoGridMatchGroups.add(diseaseMatchGroup); - } - - if (!mouseModels.isEmpty()){ - PhenoGridMatchGroup mouseMatchGroup = makePhenoGridMatchGroup(MOUSE_TAXON, mouseModels, phenotypeIds); - phenoGridMatchGroups.add(mouseMatchGroup); - } - - if(!fishModels.isEmpty()) { - PhenoGridMatchGroup fishMatchGroup = makePhenoGridMatchGroup(FISH_TAXON, fishModels, phenotypeIds); - phenoGridMatchGroups.add(fishMatchGroup); - } - - return phenoGridMatchGroups; - } - - private PhenoGridMatchGroup makePhenoGridMatchGroup(PhenoGridMatchTaxon taxon, List models, Set phenotypeIds) { - List phenoGridMatches = makePhenogridMatchesFromModels(models, taxon); - PhenoGridMatchGroup phenoGridMatchGroup = new PhenoGridMatchGroup(phenoGridMatches, phenotypeIds); - return phenoGridMatchGroup; - } - - private List makePhenogridMatchesFromModels(List diseaseGeneModels, PhenoGridMatchTaxon taxon) { - List phenoGridMatches = new ArrayList<>(); - //the models will be ordered according to the exomiser combined score, we want to re-order things purely by phenotype score - Collections.sort(diseaseGeneModels, new DescendingScoreBasedModelComparator()); - - int modelCount = 0; - for (Model model : diseaseGeneModels) { - PhenoGridMatchScore score = new PhenoGridMatchScore("hiPhive", (int) (model.getScore() * 100f), modelCount++); - logger.debug("Made new {} score modelScore:{} gridScore:{} rank:{}", model.getOrganism(), model.getScore(), score.getScore(), score.getRank()); - List phenotypeMatches = new ArrayList<>(model.getBestPhenotypeMatchForTerms().values()); - if (model.getOrganism() == Organism.HUMAN) { - PhenoGridMatch match = makeDiseasePhenoGridMatch(model, phenotypeMatches, score, taxon); - phenoGridMatches.add(match); - } else { - PhenoGridMatch match = makeGenePhenoGridMatch(model, phenotypeMatches, score, taxon); - phenoGridMatches.add(match); - } - } - - return phenoGridMatches; - } - - private PhenoGridMatch makeDiseasePhenoGridMatch(Model model, List phenotypeMatches, PhenoGridMatchScore score, PhenoGridMatchTaxon taxon) { - DiseaseModel diseaseModel = (DiseaseModel) model; - return new PhenoGridMatch(diseaseModel.getDiseaseId(), diseaseModel.getDiseaseTerm(), "disease", phenotypeMatches, score, taxon); - } - - private PhenoGridMatch makeGenePhenoGridMatch(Model model, List phenotypeMatches, PhenoGridMatchScore score, PhenoGridMatchTaxon taxon) { - GeneModel geneModel = (GeneModel) model; - return new PhenoGridMatch(geneModel.getModelGeneId(), geneModel.getModelGeneSymbol(), "gene", phenotypeMatches, score, taxon); - } - - private static class DescendingScoreBasedModelComparator implements Comparator { - @Override - public int compare(Model model1, Model model2) { - //we want the results in descending order i.e. greater score first - return - Double.compare(model1.getScore(), model2.getScore()); - } - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatch.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatch.java deleted file mode 100644 index d8f4bcb1c..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatch.java +++ /dev/null @@ -1,122 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import com.fasterxml.jackson.annotation.JsonIgnore; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.List; -import java.util.Objects; -import java.util.Set; -import java.util.TreeSet; - -/** - * Data transport object for outputting phenotype match data to a disease or - * gene phenotype. - * - * @author Jules Jacobsen - */ -public class PhenoGridMatch { - - private final String id; - private final String label; - private final String type; - - private final List matches; - private final PhenoGridMatchScore score; - private final PhenoGridMatchTaxon taxon; - - public PhenoGridMatch(String id, String label, String type, List phenotypeMatches, PhenoGridMatchScore score, PhenoGridMatchTaxon taxon) { - this.id = id; - this.label = label; - this.type = type; - this.matches = phenotypeMatches; - this.score = score; - this.taxon = taxon; - } - - public String getId() { - return id; - } - - public String getLabel() { - return label; - } - - public String getType() { - return type; - } - - public List getMatches() { - return matches; - } - - public PhenoGridMatchScore getScore() { - return score; - } - - public PhenoGridMatchTaxon getTaxon() { - return taxon; - } - - @JsonIgnore - public Set getQueryTermIds() { - Set queryTermIds = new TreeSet(); - for (PhenotypeMatch phenotypeMatch : matches) { - PhenotypeTerm queryPhenotype = phenotypeMatch.getQueryPhenotype(); - queryTermIds.add(queryPhenotype.getId()); - } - return queryTermIds; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 53 * hash + Objects.hashCode(this.id); - hash = 53 * hash + Objects.hashCode(this.label); - hash = 53 * hash + Objects.hashCode(this.type); - hash = 53 * hash + Objects.hashCode(this.matches); - hash = 53 * hash + Objects.hashCode(this.score); - hash = 53 * hash + Objects.hashCode(this.taxon); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PhenoGridMatch other = (PhenoGridMatch) obj; - if (!Objects.equals(this.id, other.id)) { - return false; - } - if (!Objects.equals(this.label, other.label)) { - return false; - } - if (!Objects.equals(this.type, other.type)) { - return false; - } - if (!Objects.equals(this.matches, other.matches)) { - return false; - } - if (!Objects.equals(this.score, other.score)) { - return false; - } - if (!Objects.equals(this.taxon, other.taxon)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "PhenoGridMatch{" + "id=" + id + ", label=" + label + ", type=" + type + ", #matches=" + matches.size() + ", score=" + score + ", taxon=" + taxon + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchGroup.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchGroup.java deleted file mode 100644 index 97fc98e3f..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchGroup.java +++ /dev/null @@ -1,84 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import com.fasterxml.jackson.annotation.JsonProperty; -import java.util.ArrayList; -import java.util.Collection; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Objects; -import java.util.Set; -import java.util.TreeSet; - -/** - * Data transport object for representing all gene/disease phenotype matches for - * an organism to a set of query phenotype ids. - * - * For example: - * http://www.monarchinitiative.org/simsearch/phenotype?input_items=HP:0000218,HP:0000238,HP:0000244,HP:0000303,HP:0000316,HP:0000327,HP:0000486,HP:0000494,HP:0000586,HP:0000678,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003070,HP:0005347,HP:0006101,HP:0010055,HP:0011304,HP:0005280,HP:0003795,HP:0004440,HP:0000452,HP:0000453,HP:0001159,HP:0003041,HP:0003196,HP:0006110&target_species=9606&limit=10 - * - * @author Jules Jacobsen - */ -public class PhenoGridMatchGroup { - - private final List matches; - private final Set queryPhenotypeTermIds; - //what's this cutoff for? the IC? - private static final int CUTOFF = 10; - - public PhenoGridMatchGroup(List matches, Collection queryPhenotypeTermIds) { - this.matches = matches; - this.queryPhenotypeTermIds = new TreeSet<>(queryPhenotypeTermIds); - } - - @JsonProperty("b") - public List getMatches() { - return matches; - } - - @JsonProperty("a") - public Set getQueryPhenotypeTermIds() { - return queryPhenotypeTermIds; - } - - @JsonProperty("cutoff") - public int getCutOff() { - return CUTOFF; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 17 * hash + Objects.hashCode(this.matches); - hash = 17 * hash + Objects.hashCode(this.queryPhenotypeTermIds); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PhenoGridMatchGroup other = (PhenoGridMatchGroup) obj; - if (!Objects.equals(this.matches, other.matches)) { - return false; - } - if (!Objects.equals(this.queryPhenotypeTermIds, other.queryPhenotypeTermIds)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "PhenoGridMatchGroup{" + "matches=" + matches + ", queryPhenotypeTermIds=" + queryPhenotypeTermIds + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchScore.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchScore.java deleted file mode 100644 index a928a37a6..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchScore.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import java.util.Objects; - -/** - * - * @author Jules Jacobsen - */ -public class PhenoGridMatchScore { - - private final String metric; - private final int score; - private final int rank; - - public PhenoGridMatchScore(String metric, int score, int rank) { - this.metric = metric; - this.score = score; - this.rank = rank; - } - - public String getMetric() { - return metric; - } - - public int getScore() { - return score; - } - - public int getRank() { - return rank; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 89 * hash + Objects.hashCode(this.metric); - hash = 89 * hash + this.score; - hash = 89 * hash + this.rank; - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PhenoGridMatchScore other = (PhenoGridMatchScore) obj; - if (!Objects.equals(this.metric, other.metric)) { - return false; - } - if (this.score != other.score) { - return false; - } - if (this.rank != other.rank) { - return false; - } - return true; - } - - - @Override - public String toString() { - return "PhenoGridMatchScore{" + "metric=" + metric + ", score=" + score + ", rank=" + rank + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTaxon.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTaxon.java deleted file mode 100644 index 5d6d15e1d..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTaxon.java +++ /dev/null @@ -1,60 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import java.util.Objects; - -/** - * - * @author Jules Jacobsen - */ -public class PhenoGridMatchTaxon { - - private final String id; - private final String label; - - public PhenoGridMatchTaxon(String id, String label) { - this.id = id; - this.label = label; - } - - public String getId() { - return id; - } - - public String getLabel() { - return label; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 29 * hash + Objects.hashCode(this.id); - hash = 29 * hash + Objects.hashCode(this.label); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final PhenoGridMatchTaxon other = (PhenoGridMatchTaxon) obj; - if (!Objects.equals(this.id, other.id)) { - return false; - } - return Objects.equals(this.label, other.label); - } - - @Override - public String toString() { - return "PhenoGridMatchTaxon{" + "id=" + id + ", label=" + label + '}'; - } - -} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridQueryTerms.java b/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridQueryTerms.java deleted file mode 100644 index 982a99a81..000000000 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridQueryTerms.java +++ /dev/null @@ -1,34 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import com.fasterxml.jackson.annotation.JsonProperty; -import java.util.Set; - -/** - * - * @author Jules Jacobsen - */ -public class PhenoGridQueryTerms { - - private final String id; - private final Set phenotypeIds; - - public PhenoGridQueryTerms(String id, Set phenotypeIds) { - this.id = id; - this.phenotypeIds = phenotypeIds; - } - - public String getId() { - return id; - } - - @JsonProperty("phenotype_list") - public Set getPhenotypeIds() { - return phenotypeIds; - } - -} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/Exomiser.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/Exomiser.java new file mode 100644 index 000000000..e31e1dce5 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/Exomiser.java @@ -0,0 +1,64 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core; + +import org.monarchinitiative.exomiser.core.analysis.*; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +/** + * This is the main entry point for analysing data using the Exomiser. An {@link Analysis} + * should be build using either a {@link Settings} and the {@link SettingsParser} or with an {@link AnalysisParser} + * or programmtically using the {@link AnalysisBuilder} + * + * @author Jules Jacobsen + */ +@Component +public class Exomiser { + + private static final Logger logger = LoggerFactory.getLogger(Exomiser.class); + + private final AnalysisFactory analysisFactory; + + @Autowired + public Exomiser(AnalysisFactory analysisFactory) { + this.analysisFactory = analysisFactory; + } + + public AnalysisBuilder getAnalysisBuilder() { + return analysisFactory.getAnalysisBuilder(); + } + + public AnalysisResults run(Analysis analysis) { + AnalysisMode analysisMode = analysis.getAnalysisMode(); + logger.info("Running analysis with mode: {}", analysisMode); + AnalysisRunner analysisRunner = analysisFactory.getAnalysisRunnerForMode(analysisMode); + return analysisRunner.run(analysis); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java new file mode 100644 index 000000000..65f9abb58 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AbstractAnalysisRunner.java @@ -0,0 +1,363 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import de.charite.compbio.jannovar.pedigree.Pedigree; +import htsjdk.variant.vcf.VCFFileReader; +import htsjdk.variant.vcf.VCFHeader; +import org.monarchinitiative.exomiser.core.analysis.util.*; +import org.monarchinitiative.exomiser.core.filters.GeneFilter; +import org.monarchinitiative.exomiser.core.filters.GeneFilterRunner; +import org.monarchinitiative.exomiser.core.filters.VariantFilter; +import org.monarchinitiative.exomiser.core.filters.VariantFilterRunner; +import org.monarchinitiative.exomiser.core.genome.GeneFactory; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.genome.VariantFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.RegulatoryFeature; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.nio.file.Path; +import java.time.Duration; +import java.time.Instant; +import java.util.ArrayList; +import java.util.List; +import java.util.Map; +import java.util.concurrent.atomic.AtomicInteger; +import java.util.function.Consumer; +import java.util.function.Function; +import java.util.function.Predicate; +import java.util.stream.Stream; + +import static java.util.stream.Collectors.toConcurrentMap; +import static java.util.stream.Collectors.toList; + +/** + * @author Jules Jacobsen + */ +abstract class AbstractAnalysisRunner implements AnalysisRunner { + + private static final Logger logger = LoggerFactory.getLogger(AbstractAnalysisRunner.class); + + private final GeneFactory geneFactory; + private final VariantFactory variantFactory; + + private final VariantDataService variantDataService; + final VariantFilterRunner variantFilterRunner; + private final GeneFilterRunner geneFilterRunner; + + public AbstractAnalysisRunner(GeneFactory geneFactory, VariantFactory variantFactory, VariantDataService variantDataService, VariantFilterRunner variantFilterRunner, GeneFilterRunner geneFilterRunner) { + this.geneFactory = geneFactory; + this.variantFactory = variantFactory; + this.variantDataService = variantDataService; + this.variantFilterRunner = variantFilterRunner; + this.geneFilterRunner = geneFilterRunner; + } + + @Override + public AnalysisResults run(Analysis analysis) { + + Path vcfPath = analysis.getVcfPath(); + Path pedigreeFilePath = analysis.getPedPath(); + + logger.info("Setting up analysis for VCF and PED files: {}, {}", vcfPath, pedigreeFilePath); + VCFHeader vcfHeader = readVcfHeader(vcfPath); + List sampleNames = vcfHeader.getGenotypeSamples(); + + String probandSampleName = SampleNameChecker.getProbandSampleName(analysis.getProbandSampleName(), sampleNames); + int probandSampleId = SampleNameChecker.getProbandSampleId(probandSampleName, sampleNames); + + Pedigree pedigree = new PedigreeFactory().createPedigreeForSampleData(pedigreeFilePath, sampleNames); + ModeOfInheritance modeOfInheritance = analysis.getModeOfInheritance(); + + logger.info("Running analysis for proband {} (sample {} in VCF) from samples: {}", probandSampleName, probandSampleId + 1, sampleNames); + Instant timeStart = Instant.now(); + List hpoIds = analysis.getHpoIds(); + //soo many comments - this is a bad sign that this is too complicated. + Map allGenes = makeKnownGenes(); + List variantEvaluations = new ArrayList<>(); +// some kind of multi-map with ordered duplicate keys would allow for easy grouping of steps for running the groups together. + List> analysisStepGroups = analysis.getAnalysisStepsGroupedByFunction(); + boolean variantsLoaded = false; + for (List analysisGroup : analysisStepGroups) { + //this is admittedly pretty confusing code and I'm sorry. It's easiest to follow if you turn on debugging. + //The analysis steps are run in groups of VARIANT_FILTER, GENE_ONLY_DEPENDENT or INHERITANCE_MODE_DEPENDENT + AnalysisStep firstStep = analysisGroup.get(0); + logger.debug("Running {} group: {}", firstStep.getType(), analysisGroup); + if (firstStep.isVariantFilter() && !variantsLoaded) { + //variants take up 99% of all the memory in an analysis - this scales approximately linearly with the sample size + //so for whole genomes this is best run as a stream to filter out the unwanted variants with as many filters as possible in one go + variantEvaluations = loadAndFilterVariants(vcfPath, allGenes, analysisGroup, analysis); + //this is done here as there are GeneFilter steps which may require Variants in the genes, or the InheritanceModeDependent steps which definitely need them... + assignVariantsToGenes(variantEvaluations, allGenes); + variantsLoaded = true; + } else { + runSteps(analysisGroup, hpoIds, new ArrayList<>(allGenes.values()), pedigree, modeOfInheritance); + } + } + //maybe only the non-variant dependent steps have been run in which case we need to load the variants although + //the results might be a bit meaningless. + //See issue #129 This is an excellent place to put the output of a gene phenotype score only run. + //i.e. stream in the variants, annotate them (assign a gene symbol) then write out that variant with the calculated GENE_PHENO_SCORE (prioritiser scores). + //this would fit well with a lot of people's pipelines where they only want the phenotype score as they are using VEP or ANNOVAR for variant analysis. + if (!variantsLoaded) { + try(Stream variantStream = loadVariants(vcfPath)) { + variantEvaluations = variantStream.collect(toList()); + } + assignVariantsToGenes(variantEvaluations, allGenes); + } + + logger.info("Scoring genes"); + GeneScorer geneScorer = new RawScoreGeneScorer(probandSampleId, modeOfInheritance, pedigree); + List genes = geneScorer.scoreGenes(getGenesWithVariants(allGenes).collect(toList())); + List variants = getFinalVariantList(variantEvaluations); + logger.info("Analysed {} genes containing {} filtered variants", genes.size(), variants.size()); + + logger.info("Creating analysis results from VCF and PED files: {}, {}", vcfPath, pedigreeFilePath); + AnalysisResults analysisResults = AnalysisResults.builder() + .vcfPath(vcfPath) + .pedPath(pedigreeFilePath) + .vcfHeader(vcfHeader) + .probandSampleName(probandSampleName) + .sampleNames(vcfHeader.getGenotypeSamples()) + .pedigree(pedigree) + .genes(genes) + .variantEvaluations(variants) + .build(); + + Duration duration = Duration.between(timeStart, Instant.now()); + long ms = duration.toMillis(); + logger.info("Finished analysis in {}m {}s {}ms ({} ms)", (ms / 1000) / 60 % 60, ms / 1000 % 60, ms % 1000, ms); + return analysisResults; + } + + private List loadAndFilterVariants(Path vcfPath, Map allGenes, List analysisGroup, Analysis analysis) { + GeneReassigner geneReassigner = createNonCodingVariantGeneReassigner(analysis, allGenes); + List variantFilters = getVariantFilterSteps(analysisGroup); + + List filteredVariants; + VariantLogger variantLogger = new VariantLogger(); + try (Stream variantStream = loadVariants(vcfPath)) { + filteredVariants = variantStream + .peek(variantLogger.logLoadedAndPassedVariants()) + .map(reassignNonCodingVariantToBestGeneInJannovarAnnotations(geneReassigner)) + .map(reassignNonCodingVariantToBestGeneInTad(geneReassigner)) + .filter(isAssociatedWithKnownGene(allGenes)) + .filter(runVariantFilters(variantFilters)) + .peek(variantLogger.countPassedVariant()) + .collect(toList()); + } + variantLogger.logResults(); + return filteredVariants; + } + + private GeneReassigner createNonCodingVariantGeneReassigner(Analysis analysis, Map allGenes) { + ChromosomalRegionIndex tadIndex = new ChromosomalRegionIndex<>(variantDataService.getTopologicallyAssociatedDomains()); + PriorityType mainPriorityType = analysis.getMainPrioritiserType(); + return new GeneReassigner(mainPriorityType, allGenes, tadIndex); + } + + private List getVariantFilterSteps(List analysisSteps) { + logger.info("Filtering variants with:"); + return analysisSteps.stream() + .filter(AnalysisStep::isVariantFilter) + .map(analysisStep -> { + logger.info("{}", analysisStep); + return (VariantFilter) analysisStep; + }) + .collect(toList()); + } + + private Function reassignNonCodingVariantToBestGeneInTad(GeneReassigner geneReassigner) { + //todo: this won't function correctly if run before a prioritiser has been run + return variantEvaluation -> { + geneReassigner.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variantEvaluation); + return variantEvaluation; + }; + } + + private Function reassignNonCodingVariantToBestGeneInJannovarAnnotations(GeneReassigner geneReassigner) { + return variantEvaluation -> { + if (variantEvaluation.isNonCodingVariant()){ + geneReassigner.reassignGeneToMostPhenotypicallySimilarGeneInAnnotations(variantEvaluation); + } + return variantEvaluation; + }; + } + + /** + * Defines the filtering behaviour of the runner when performing the initial load and filter of variants. Allows the + * concrete runner to define whether a variant should pass or fail depending on the gene or status of the gene it is + * assigned to. + * + * @param genes + * @return + */ + abstract Predicate isAssociatedWithKnownGene(Map genes); + + /** + * Defines the filtering behaviour of the runner when performing the initial load and filter of variants. Allows the + * concrete runner to define whether a variant should pass or fail when running the variant through the variant + * filters defined in the variant filter group, or the initial group if there are more than one. + * + * @param variantFilters + * @return + */ + abstract Predicate runVariantFilters(List variantFilters); + + private Stream loadVariants(Path vcfPath) { + List regulatoryFeatures = variantDataService.getRegulatoryFeatures(); + ChromosomalRegionIndex regulatoryRegionIndex = new ChromosomalRegionIndex<>(regulatoryFeatures); + logger.info("Loaded {} regulatory regions", regulatoryFeatures.size()); + //WARNING!!! THIS IS NOT THREADSAFE DO NOT USE PARALLEL STREAMS + return variantFactory.streamVariantEvaluations(vcfPath).map(setRegulatoryRegionVariantEffect(regulatoryRegionIndex)); + } + + //Adds the missing REGULATORY_REGION_VARIANT effect to variants - this isn't in the Jannovar data set. + //This ought to move into the variantFactory/variantDataService + private Function setRegulatoryRegionVariantEffect(ChromosomalRegionIndex regulatoryRegionIndex) { + return variantEvaluation -> { + VariantEffect variantEffect = variantEvaluation.getVariantEffect(); + //n.b this check here is important as ENSEMBLE can have regulatory regions overlapping with missense variants. + if (isIntergenicOrUpstreamOfGene(variantEffect) && regulatoryRegionIndex.hasRegionContainingVariant(variantEvaluation)) { + //the effect is the same for all regulatory regions, so for the sake of speed, just assign it here rather than look it up from the list + variantEvaluation.setVariantEffect(VariantEffect.REGULATORY_REGION_VARIANT); + } + return variantEvaluation; + }; + } + + private boolean isIntergenicOrUpstreamOfGene(VariantEffect variantEffect) { + return variantEffect == VariantEffect.INTERGENIC_VARIANT || variantEffect == VariantEffect.UPSTREAM_GENE_VARIANT; + } + + private VCFHeader readVcfHeader(Path vcfFilePath) { + try (VCFFileReader vcfReader = new VCFFileReader(vcfFilePath.toFile(), false)) { + return vcfReader.getFileHeader(); + } + } + + private void assignVariantsToGenes(List variantEvaluations, Map allGenes) { + for (VariantEvaluation variantEvaluation : variantEvaluations) { + Gene gene = allGenes.get(variantEvaluation.getGeneSymbol()); + gene.addVariant(variantEvaluation); + } + } + + /** + * @param allGenes + * @return + */ + protected Stream getGenesWithVariants(Map allGenes) { + return allGenes.values() + .stream() + .filter(Gene::hasVariants); + } + + abstract List getFinalVariantList(List variants); + + /** + * @return a map of genes indexed by gene symbol. + */ + private Map makeKnownGenes() { + return geneFactory.createKnownGenes() + .parallelStream() + .collect(toConcurrentMap(Gene::getGeneSymbol, Function.identity())); + } + + //might this be a nascent class waiting to get out here? + private void runSteps(List analysisSteps, List hpoIds, List genes, Pedigree pedigree, ModeOfInheritance modeOfInheritance) { + boolean inheritanceModesCalculated = false; + for (AnalysisStep analysisStep : analysisSteps) { + if (!inheritanceModesCalculated && analysisStep.isInheritanceModeDependent()) { + analyseGeneCompatibilityWithInheritanceMode(genes, pedigree, modeOfInheritance); + inheritanceModesCalculated = true; + } + runStep(analysisStep, hpoIds, genes); + } + } + + private void runStep(AnalysisStep analysisStep, List hpoIds, List genes) { + if (analysisStep.isVariantFilter()) { + VariantFilter filter = (VariantFilter) analysisStep; + logger.info("Running VariantFilter: {}", filter); + for (Gene gene : genes) { + variantFilterRunner.run(filter, gene.getVariantEvaluations()); + } + return; + + } + if (GeneFilter.class.isInstance(analysisStep)) { + GeneFilter filter = (GeneFilter) analysisStep; + logger.info("Running GeneFilter: {}", filter); + geneFilterRunner.run(filter, genes); + return; + } + + if (Prioritiser.class.isInstance(analysisStep)) { + Prioritiser prioritiser = (Prioritiser) analysisStep; + logger.info("Running Prioritiser: {}", prioritiser); + prioritiser.prioritizeGenes(hpoIds, genes); + } + } + + private void analyseGeneCompatibilityWithInheritanceMode(List genes, Pedigree pedigree, ModeOfInheritance modeOfInheritance) { + InheritanceModeAnalyser inheritanceModeAnalyser = new InheritanceModeAnalyser(modeOfInheritance, pedigree); + logger.info("Checking compatibility with {} inheritance mode for genes which passed filters", modeOfInheritance); + inheritanceModeAnalyser.analyseInheritanceModes(genes); + } + + /** + * Utility class for logging numbers of processed and passed variants. + */ + private class VariantLogger { + private AtomicInteger loaded = new AtomicInteger(); + private AtomicInteger passed = new AtomicInteger(); + + private Consumer logLoadedAndPassedVariants() { + return variantEvaluation -> { + loaded.incrementAndGet(); + if (loaded.get() % 100000 == 0) { + logger.info("Loaded {} variants - {} passed variant filters...", loaded.get(), passed.get()); + } + }; + } + + private Consumer countPassedVariant() { + return variantEvaluation -> { + if (variantEvaluation.passedFilters()) { + passed.incrementAndGet(); + } + }; + } + + void logResults() { + logger.info("Loaded {} variants - {} passed variant filters", loaded.get(), passed.get()); + } + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/Analysis.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/Analysis.java new file mode 100644 index 000000000..f87d19c48 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/Analysis.java @@ -0,0 +1,302 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis; + +import com.fasterxml.jackson.annotation.JsonCreator; +import com.fasterxml.jackson.annotation.JsonIgnore; +import com.fasterxml.jackson.annotation.JsonProperty; +import com.fasterxml.jackson.annotation.JsonPropertyOrder; +import com.fasterxml.jackson.databind.annotation.JsonDeserialize; +import com.google.common.collect.ImmutableList; +import com.google.common.collect.Sets; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.nio.file.Path; +import java.util.*; + +/** + * This class is analogous to the {@link Settings} class, although the key difference is that an Analysis allows an the + * excecution of an arbitrary number of {@link AnalysisStep} in almost any order. + * + * Creation of an Analysis is *strongly* recommended to be done via an {@link AnalysisBuilder} obtained from an {@link AnalysisFactory}. + * Not doing so will likely result in incorrect/meaningless results. + * + * @since 7.0.0 + * @author Jules Jacobsen + */ +@JsonDeserialize(builder = Analysis.Builder.class) +@JsonPropertyOrder({"vcf", "ped", "proband", "hpoIds", "modeOfInheritance", "analysisMode", "frequencySources", "pathogenicitySources", "analysisSteps"}) +public class Analysis { + + private static final Logger logger = LoggerFactory.getLogger(Analysis.class); + + //Store the path of the file used to create this data. + @JsonProperty("vcf") + private final Path vcfPath; + //there is often no pedigree. + @JsonProperty("ped") + private final Path pedPath; + @JsonProperty("proband") + private final String probandSampleName; + + //these are more optional variables + private final List hpoIds; + private final ModeOfInheritance modeOfInheritance; + + private final AnalysisMode analysisMode; + private final Set frequencySources; + private final Set pathogenicitySources; + private final List analysisSteps; + + private Analysis(Builder builder) { + this.vcfPath = builder.vcfPath; + this.pedPath = builder.pedPath; + this.probandSampleName = builder.probandSampleName; + this.hpoIds = ImmutableList.copyOf(builder.hpoIds); + this.modeOfInheritance = builder.modeOfInheritance; + + this.analysisMode = builder.analysisMode; + this.frequencySources = Sets.immutableEnumSet(builder.frequencySources); + this.pathogenicitySources = Sets.immutableEnumSet(builder.pathogenicitySources); + this.analysisSteps = ImmutableList.copyOf(builder.analysisSteps); + } + + public Path getVcfPath() { + return vcfPath; + } + + public Path getPedPath() { + return pedPath; + } + + public String getProbandSampleName() { + return probandSampleName; + } + + public ModeOfInheritance getModeOfInheritance() { + return modeOfInheritance; + } + + public List getHpoIds() { + return hpoIds; + } + + public AnalysisMode getAnalysisMode() { + return analysisMode; + } + + public Set getFrequencySources() { + return frequencySources; + } + + public Set getPathogenicitySources() { + return pathogenicitySources; + } + + public List getAnalysisSteps() { + return analysisSteps; + } + + @JsonIgnore + public PriorityType getMainPrioritiserType() { + for (AnalysisStep analysisStep : analysisSteps) { + if (Prioritiser.class.isInstance(analysisStep)) { + Prioritiser prioritiser = (Prioritiser) analysisStep; + //OMIM, if combined with other prioritisers isn't the main one. + if (prioritiser.getPriorityType() != PriorityType.OMIM_PRIORITY) { + return prioritiser.getPriorityType(); + } + } + } + return PriorityType.NONE; + } + + @JsonIgnore + public List> getAnalysisStepsGroupedByFunction() { + List> groups = new ArrayList<>(); + if (analysisSteps.isEmpty()) { + logger.debug("No AnalysisSteps to group."); + return groups; + } + + AnalysisStep currentGroupStep = analysisSteps.get(0); + List currentGroup = new ArrayList<>(); + currentGroup.add(currentGroupStep); + logger.debug("First group is for {} steps", currentGroupStep.getType()); + for (int i = 1; i < analysisSteps.size(); i++) { + AnalysisStep step = analysisSteps.get(i); + + if (currentGroupStep.getType() != step.getType()) { + logger.debug("Making new group for {} steps", step.getType()); + groups.add(currentGroup); + currentGroup = new ArrayList<>(); + currentGroupStep = step; + } + + currentGroup.add(step); + } + //make sure the last group is added too + groups.add(currentGroup); + + return groups; + } + + /** + * Returns a new builder instance for creating Analysis objects. *CAUTION* It is strongly advisable to create Analysis + * objects using the {@link AnalysisBuilder} objects created with the {@link AnalysisFactory}. This will ensure the + * analysis is in a fit state to run. + * + * This method should only be used for simple unit tests. More complete ones should use the {@link AnalysisBuilder} + * as stated above. + * + * @return a new Builder instance. + */ + @JsonCreator + public static Builder builder() { + return new Builder(); + } + + /** + * Creates a shallow copy of the current Analysis. This is only a potential issue for the AnalysisSteps as all other + * compound classes are immutable. + * @return an Analysis.Builder copy of the current Analysis. + */ + public Builder copy() { + return builder() + .vcfPath(vcfPath) + .pedPath(pedPath) + .probandSampleName(probandSampleName) + .hpoIds(hpoIds) + .modeOfInheritance(modeOfInheritance) + + .analysisMode(analysisMode) + .frequencySources(frequencySources) + .pathogenicitySources(pathogenicitySources) + .steps(analysisSteps); + } + + public static class Builder { + + private Path vcfPath = null; + //there is often no pedigree. + private Path pedPath = null; + private String probandSampleName = ""; + //these are more optional variables + private List hpoIds = new ArrayList<>(); + private ModeOfInheritance modeOfInheritance = ModeOfInheritance.ANY; + + private AnalysisMode analysisMode = AnalysisMode.PASS_ONLY; + private Set frequencySources = EnumSet.noneOf(FrequencySource.class); + private Set pathogenicitySources = EnumSet.noneOf(PathogenicitySource.class); + private List analysisSteps = new ArrayList<>(); + + public Analysis build() { + return new Analysis(this); + } + + public Builder vcfPath(Path vcfPath) { + this.vcfPath = vcfPath; + return this; + } + + public Builder pedPath(Path pedPath) { + this.pedPath = pedPath; + return this; + } + + public Builder probandSampleName(String probandSampleName) { + this.probandSampleName = probandSampleName; + return this; + } + + public Builder hpoIds(List hpoIds) { + this.hpoIds = hpoIds; + return this; + } + + public Builder modeOfInheritance(ModeOfInheritance modeOfInheritance) { + this.modeOfInheritance = modeOfInheritance; + return this; + } + + public Builder analysisMode(AnalysisMode analysisMode) { + this.analysisMode = analysisMode; + return this; + } + + public Builder frequencySources(Set frequencySources) { + this.frequencySources = frequencySources; + return this; + } + + public Builder pathogenicitySources(Set pathogenicitySources) { + this.pathogenicitySources = pathogenicitySources; + return this; + } + + public Builder addStep(AnalysisStep step) { + this.analysisSteps.add(step); + return this; + } + + public Builder steps(List analysisSteps) { + this.analysisSteps = new ArrayList<>(analysisSteps); + return this; + } + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + Analysis analysis = (Analysis) o; + return Objects.equals(vcfPath, analysis.vcfPath) && + Objects.equals(pedPath, analysis.pedPath) && + Objects.equals(probandSampleName, analysis.probandSampleName) && + Objects.equals(hpoIds, analysis.hpoIds) && + modeOfInheritance == analysis.modeOfInheritance && + analysisMode == analysis.analysisMode && + Objects.equals(frequencySources, analysis.frequencySources) && + Objects.equals(pathogenicitySources, analysis.pathogenicitySources) && + Objects.equals(analysisSteps, analysis.analysisSteps); + } + + @Override + public int hashCode() { + return Objects.hash(vcfPath, pedPath, probandSampleName, hpoIds, modeOfInheritance, analysisMode, frequencySources, pathogenicitySources, analysisSteps); + } + + @Override + public String toString() { + return "Analysis{" + "vcfPath=" + vcfPath + ", pedPath=" + pedPath + ", probandSampleName=" + probandSampleName + ", hpoIds=" + hpoIds + ", modeOfInheritance=" + modeOfInheritance + ", analysisMode=" + analysisMode + ", frequencySources=" + frequencySources + ", pathogenicitySources=" + pathogenicitySources + ", analysisSteps=" + analysisSteps + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisBuilder.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisBuilder.java new file mode 100644 index 000000000..83fb1f5a6 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisBuilder.java @@ -0,0 +1,248 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import com.google.common.collect.ImmutableList; +import com.google.common.collect.Sets; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.HiPhiveOptions; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactory; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.nio.file.Path; +import java.util.*; + +/** + * Class for correctly building an {@link Analysis} object ready to be run by an {@link AnalysisRunner}. + * + * @author Jules Jacobsen + */ +public class AnalysisBuilder { + + private static final Logger logger = LoggerFactory.getLogger(AnalysisBuilder.class); + + private final PriorityFactory priorityFactory; + private final VariantDataService variantDataService; + + private final Analysis.Builder builder; + + //Sample-related variables + private List hpoIds = new ArrayList<>(); + private ModeOfInheritance modeOfInheritance = ModeOfInheritance.ANY; + //Source-data-related variables + private Set frequencySources = EnumSet.noneOf(FrequencySource.class); + private Set pathogenicitySources = EnumSet.noneOf(PathogenicitySource.class); + + private List analysisSteps = new ArrayList<>(); + + AnalysisBuilder(PriorityFactory priorityFactory, VariantDataService variantDataService) { + this.priorityFactory = priorityFactory; + this.variantDataService = variantDataService; + this.builder = Analysis.builder(); + } + + public Analysis build() { + new AnalysisStepChecker().check(analysisSteps); + builder.steps(analysisSteps); + return builder.build(); + } + + public AnalysisBuilder vcfPath(Path vcfPath) { + builder.vcfPath(vcfPath); + return this; + } + + public AnalysisBuilder pedPath(Path pedPath) { + builder.pedPath(pedPath); + return this; + } + + public AnalysisBuilder probandSampleName(String sampleName) { + builder.probandSampleName(sampleName); + return this; + } + + public AnalysisBuilder hpoIds(List hpoIds) { + this.hpoIds = ImmutableList.copyOf(hpoIds); + builder.hpoIds(this.hpoIds); + return this; + } + + public AnalysisBuilder modeOfInheritance(ModeOfInheritance modeOfInheritance) { + this.modeOfInheritance = modeOfInheritance; + builder.modeOfInheritance(modeOfInheritance); + return this; + } + + public AnalysisBuilder analysisMode(AnalysisMode analysisMode) { + builder.analysisMode(analysisMode); + return this; + } + + public AnalysisBuilder frequencySources(Set frequencySources) { + this.frequencySources = Sets.immutableEnumSet(frequencySources); + builder.frequencySources(frequencySources); + return this; + } + + public AnalysisBuilder pathogenicitySources(Set pathogenicitySources) { + this.pathogenicitySources = Sets.immutableEnumSet(pathogenicitySources); + builder.pathogenicitySources(pathogenicitySources); + return this; + } + + //Filters + + /** + * Adds a {@link FailedVariantFilter} to the {@link Analysis}. This will remove variants without a 'PASS' or '.' in + * the input VCF. + * + * @return An {@link AnalysisBuilder} with a {@link FailedVariantFilter} added to the analysis steps. + */ + public AnalysisBuilder addFailedVariantFilter() { + analysisSteps.add(new FailedVariantFilter()); + return this; + } + + public AnalysisBuilder addIntervalFilter(GeneticInterval interval) { + analysisSteps.add(new IntervalFilter(interval)); + return this; + } + + public AnalysisBuilder addGeneIdFilter(Set entrezIds) { + analysisSteps.add(new EntrezGeneIdFilter(new LinkedHashSet<>(entrezIds))); + return this; + } + + public AnalysisBuilder addVariantEffectFilter(Set variantEffects) { + analysisSteps.add(new VariantEffectFilter(Sets.immutableEnumSet(variantEffects))); + return this; + } + + public AnalysisBuilder addQualityFilter(double cutoff) { + analysisSteps.add(new QualityFilter(cutoff)); + return this; + } + + public AnalysisBuilder addKnownVariantFilter() { + analysisSteps.add(makeFrequencyDependentStep(new KnownVariantFilter())); + return this; + } + + private FrequencyDataProvider makeFrequencyDependentStep(VariantFilter filter) { + if (frequencySources.isEmpty()) { + throw new IllegalArgumentException("Frequency sources have not yet been defined. Add some frequency sources before defining the analysis steps."); + } + return new FrequencyDataProvider(variantDataService, frequencySources, filter); + } + + public AnalysisBuilder addFrequencyFilter(float cutOff) { + analysisSteps.add(makeFrequencyDependentStep(new FrequencyFilter(cutOff))); + return this; + } + + public AnalysisBuilder addPathogenicityFilter(boolean keepNonPathogenic) { + analysisSteps.add(makePathogenicityDependentStep(new PathogenicityFilter(keepNonPathogenic))); + return this; + } + + private PathogenicityDataProvider makePathogenicityDependentStep(PathogenicityFilter pathogenicityFilter) { + if (pathogenicitySources.isEmpty()) { + throw new IllegalArgumentException("Pathogenicity sources have not yet been defined. Add some pathogenicity sources before defining the analysis steps."); + } + return new PathogenicityDataProvider(variantDataService, pathogenicitySources, pathogenicityFilter); + } + + public AnalysisBuilder addPriorityScoreFilter(PriorityType priorityType, float minPriorityScore) { + analysisSteps.add(new PriorityScoreFilter(priorityType, minPriorityScore)); + return this; + } + + public AnalysisBuilder addRegulatoryFeatureFilter() { + analysisSteps.add(new RegulatoryFeatureFilter()); + return this; + } + + public AnalysisBuilder addInheritanceFilter() { + if (modeOfInheritance == ModeOfInheritance.ANY) { + logger.info("Not adding an inheritance filter for {} mode of inheritance", modeOfInheritance); + return this; + } + analysisSteps.add(new InheritanceFilter(modeOfInheritance)); + return this; + } + + //Prioritisers + public AnalysisBuilder addOmimPrioritiser() { + analysisSteps.add(priorityFactory.makeOmimPrioritiser()); + return this; + } + + public AnalysisBuilder addPhivePrioritiser() { + addPrioritiserStepIfHpoIdsNotEmpty(priorityFactory.makePhivePrioritiser()); + return this; + } + + private void addPrioritiserStepIfHpoIdsNotEmpty(Prioritiser prioritiser) { + if (hpoIds == null || hpoIds.isEmpty()) { + throw new IllegalArgumentException("HPO IDs not yet defined. Define some sample phenotypes before adding Prioritiser of type " + prioritiser + .getPriorityType()); + } + analysisSteps.add(prioritiser); + } + + public AnalysisBuilder addHiPhivePrioritiser() { + addPrioritiserStepIfHpoIdsNotEmpty(priorityFactory.makeHiPhivePrioritiser(HiPhiveOptions.DEFAULT)); + return this; + } + + public AnalysisBuilder addHiPhivePrioritiser(HiPhiveOptions hiPhiveOptions) { + addPrioritiserStepIfHpoIdsNotEmpty(priorityFactory.makeHiPhivePrioritiser(hiPhiveOptions)); + return this; + } + + public AnalysisBuilder addPhenixPrioritiser() { + addPrioritiserStepIfHpoIdsNotEmpty(priorityFactory.makePhenixPrioritiser()); + return this; + } + + public AnalysisBuilder addExomeWalkerPrioritiser(List seedGenes) { + if (seedGenes == null || seedGenes.isEmpty()) { + throw new IllegalArgumentException("seedGenes not defined. Define some ENTREZ gene identifiers before adding ExomeWalker prioritier"); + } + analysisSteps.add(priorityFactory.makeExomeWalkerPrioritiser(seedGenes)); + return this; + } + + public AnalysisBuilder addAnalysisStep(AnalysisStep analysisStep) { + analysisSteps.add(analysisStep); + return this; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisFactory.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisFactory.java new file mode 100644 index 000000000..045b04601 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisFactory.java @@ -0,0 +1,82 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import org.monarchinitiative.exomiser.core.Exomiser; +import org.monarchinitiative.exomiser.core.genome.GeneFactory; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.genome.VariantFactory; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactory; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +/** + * High-level factory for creating an {@link Analysis} and {@link AnalysisRunner}. This is + * pretty much all that's needed to run an analysis with. + * + * @see Exomiser + * @see AnalysisMode + * + * @since 7.0.0 + * @author Jules Jacobsen + */ +@Component +public class AnalysisFactory { + + private static final Logger logger = LoggerFactory.getLogger(AnalysisFactory.class); + + private final GeneFactory geneFactory; + private final VariantFactory variantFactory; + + private final PriorityFactory priorityFactory; + private final VariantDataService variantDataService; + + @Autowired + public AnalysisFactory(GeneFactory geneFactory, VariantFactory variantFactory, PriorityFactory priorityFactory, VariantDataService variantDataService) { + this.geneFactory = geneFactory; + this.variantFactory = variantFactory; + this.variantDataService = variantDataService; + this.priorityFactory = priorityFactory; + } + + public AnalysisRunner getAnalysisRunnerForMode(AnalysisMode analysisMode) { + //This class primarily exists as an external interface for the Exomiser class to be able to create and run analyses + //without having to expose too much of the Analysis package implementation. e.g. the AnalysisRunner implementations + // below are package-private. + switch (analysisMode) { + case FULL: + return new SimpleAnalysisRunner(geneFactory, variantFactory, variantDataService); + case SPARSE: + return new SparseAnalysisRunner(geneFactory, variantFactory, variantDataService); + case PASS_ONLY: + default: + //this guy takes up the least RAM + return new PassOnlyAnalysisRunner(geneFactory, variantFactory, variantDataService); + } + } + + public AnalysisBuilder getAnalysisBuilder() { + return new AnalysisBuilder(priorityFactory, variantDataService); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisMode.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisMode.java new file mode 100644 index 000000000..d79a2ab5b --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisMode.java @@ -0,0 +1,38 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis; + +/** + * Specifies how the {@link Gene} and {@link Variant} in an {@link Analysis} + * should be retained. + * + * @since 7.0.0 + * @author Jules Jacobsen + */ +public enum AnalysisMode { + + FULL, SPARSE, PASS_ONLY +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisParser.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisParser.java similarity index 76% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisParser.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisParser.java index 3fb1925dd..32401b4f5 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisParser.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisParser.java @@ -1,41 +1,41 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.filters.*; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.ExomeWalkerPriority; -import de.charite.compbio.exomiser.core.prioritisers.HiPhiveOptions; -import de.charite.compbio.exomiser.core.prioritisers.HiPhivePriority; -import de.charite.compbio.exomiser.core.prioritisers.PriorityFactory; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.prioritisers.ScoringMode; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import de.charite.compbio.exomiser.core.writers.OutputSettings; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; +package org.monarchinitiative.exomiser.core.analysis; + import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.*; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; +import org.monarchinitiative.exomiser.core.writers.OutputSettings; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; +import org.yaml.snakeyaml.Yaml; import java.io.BufferedReader; import java.io.IOException; @@ -43,22 +43,18 @@ import java.io.Reader; import java.nio.charset.CharsetDecoder; import java.nio.charset.StandardCharsets; - -import static java.nio.file.Files.newInputStream; - import java.nio.file.Path; import java.nio.file.Paths; import java.util.*; import java.util.Map.Entry; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.yaml.snakeyaml.Yaml; +import static java.nio.file.Files.newInputStream; /** * @since 7.0.0 * @author Jules Jacobsen */ +@Component public class AnalysisParser { private static final Logger logger = LoggerFactory.getLogger(AnalysisParser.class); @@ -66,6 +62,7 @@ public class AnalysisParser { private final PriorityFactory prioritiserFactory; private final VariantDataService variantDataService; + @Autowired public AnalysisParser(PriorityFactory prioritiserFactory, VariantDataService variantDataService) { this.prioritiserFactory = prioritiserFactory; this.variantDataService = variantDataService; @@ -97,14 +94,12 @@ public OutputSettings parseOutputSettings(String analysisDoc) { private Analysis constructAnalysisFromMap(Map settingsMap) { AnalysisConstructor analysisConstructor = new AnalysisConstructor(); - Analysis analysis = analysisConstructor.construct((Map) settingsMap.get("analysis")); - return analysis; + return analysisConstructor.construct((Map) settingsMap.get("analysis")); } private OutputSettings constructOutputSettingsFromMap(Map settingsMap) { OutputSettingsConstructor outputSettingsConstructor = new OutputSettingsConstructor(); - OutputSettings outputSettings = outputSettingsConstructor.construct((Map) settingsMap.get("outputOptions")); - return outputSettings; + return outputSettingsConstructor.construct((Map) settingsMap.get("outputOptions")); } private BufferedReader readPath(Path analysisDoc) { @@ -113,26 +108,23 @@ private BufferedReader readPath(Path analysisDoc) { Reader reader = new InputStreamReader(newInputStream(analysisDoc), decoder); return new BufferedReader(reader); } catch (IOException ex) { - throw new AnalysisFileNotFoundException("Unable to find analysis file: " + ex.getMessage()); + throw new AnalysisFileNotFoundException("Unable to find analysis file: " + ex.getMessage(), ex); } } protected static class AnalysisFileNotFoundException extends RuntimeException { - - AnalysisFileNotFoundException(String message) { - super(message); - } + AnalysisFileNotFoundException(String message, Exception e) { super(message, e);} } private class OutputSettingsConstructor { public OutputSettings construct(Map analysisMap) { - OutputSettingsBuilder builder = new OutputSettingsBuilder(); - builder.outputPassVariantsOnly(parseOutputPassVariantsOnly(analysisMap)); - builder.numberOfGenesToShow(parseNumberOfGenesToShow(analysisMap)); - builder.outputPrefix(parseOutputPrefix(analysisMap)); - builder.outputFormats(parseOutputFormats(analysisMap)); - return builder.build(); + return OutputSettings.builder() + .outputPassVariantsOnly(parseOutputPassVariantsOnly(analysisMap)) + .numberOfGenesToShow(parseNumberOfGenesToShow(analysisMap)) + .outputPrefix(parseOutputPrefix(analysisMap)) + .outputFormats(parseOutputFormats(analysisMap)) + .build(); } private Boolean parseOutputPassVariantsOnly(Map analysisMap) { @@ -166,7 +158,7 @@ private Set parseOutputFormats(Map> analysisM } Set parsedOutputFormats = new LinkedHashSet<>(); for (String name : givenOutputFormats) { - switch (name.trim()) { + switch (name.trim().toUpperCase()) { case "HTML": parsedOutputFormats.add(OutputFormat.HTML); break; @@ -200,16 +192,19 @@ private class AnalysisConstructor { public Analysis construct(Map analysisMap) { - Analysis analysis = new Analysis(); - analysis.setVcfPath(parseVcf(analysisMap)); - analysis.setPedPath(parsePed(analysisMap)); - analysis.setHpoIds(parseHpoIds(analysisMap)); - analysis.setModeOfInheritance(parseModeOfInheritance(analysisMap)); - analysis.setScoringMode(parseScoringMode(analysisMap)); - analysis.setAnalysisMode(parseAnalysisMode(analysisMap)); - analysis.setFrequencySources(parseFrequencySources(analysisMap)); - analysis.setPathogenicitySources(parsePathogenicitySources(analysisMap)); - analysis.addAllSteps(makeAnalysisSteps(analysisMap)); + Analysis analysis = Analysis.builder() + .vcfPath(parseVcf(analysisMap)) + .pedPath(parsePed(analysisMap)) + .probandSampleName(parseProbandSampleName(analysisMap)) + .hpoIds(parseHpoIds(analysisMap)) + .modeOfInheritance(parseModeOfInheritance(analysisMap)) + .analysisMode(parseAnalysisMode(analysisMap)) + .frequencySources(parseFrequencySources(analysisMap)) + .pathogenicitySources(parsePathogenicitySources(analysisMap)) + .steps(makeAnalysisSteps(analysisMap)) + .build(); + //this method is only here to provide a warning to users that their script is out of date. + parseScoringMode(analysisMap); logger.debug("Made analysis: {}", analysis); return analysis; @@ -227,6 +222,9 @@ private List makeAnalysisSteps(Map analysisMap) { } } } + //should this be optional for people really wanting to screw about with the steps at the risk of catastrophic failure? + //it's really an optimiser step of a compiler. + new AnalysisStepChecker().check(analysisSteps); return analysisSteps; } @@ -248,15 +246,36 @@ private Path parsePed(Map analysisMap) { return Paths.get(pedValue); } + private String parseProbandSampleName(Map analysisMap) { + String probandSampleName = analysisMap.get("proband"); + //probandSampleName is allowed to be null, but may throw exceptions when the VCF/PED file is checked + if (probandSampleName == null) { + return ""; + } + return probandSampleName; + } + + private List parseHpoIds(Map analysisMap) { + List hpoIds = analysisMap.get("hpoIds"); + if (hpoIds == null) { + return new ArrayList<>(); + } + return hpoIds; + } + private ModeOfInheritance parseModeOfInheritance(Map analysisMap) { String value = analysisMap.get("modeOfInheritance"); - if (value == null) { - return ModeOfInheritance.UNINITIALIZED; + if (value == null || value.isEmpty()) { + return ModeOfInheritance.ANY; } - if (value.equals("UNDEFINED")) { - return ModeOfInheritance.UNINITIALIZED; + if (value.equals("UNDEFINED") || value.equals("UNINITIALIZED")) { + return ModeOfInheritance.ANY; + } + try { + return ModeOfInheritance.valueOf(value); + } catch (IllegalArgumentException e) { + throw new AnalysisParserException(String.format("'%s' is not a valid mode of inheritance. Use one of: %s", value, Arrays.toString(ModeOfInheritance.values()))); } - return ModeOfInheritance.valueOf(value); } private AnalysisMode parseAnalysisMode(Map analysisMap) { @@ -267,20 +286,13 @@ private AnalysisMode parseAnalysisMode(Map analysisMap) { return AnalysisMode.valueOf(value); } - private ScoringMode parseScoringMode(Map analysisMap) { + @Deprecated + private void parseScoringMode(Map analysisMap) { String value = analysisMap.get("geneScoreMode"); - if (value == null) { - return ScoringMode.RAW_SCORE; + if (value != null) { + logger.info("geneScoreMode is deprecated and {} will have no effect. " + + "Please consider removing this from your analysis script to prevent this message from showing again.", value); } - return ScoringMode.valueOf(value); - } - - private List parseHpoIds(Map analysisMap) { - List hpoIds = analysisMap.get("hpoIds"); - if (hpoIds == null) { - hpoIds = new ArrayList(); - } - return hpoIds; } private List> parseAnalysisSteps(Map analysisMap) { @@ -300,6 +312,8 @@ private AnalysisStep makeAnalysisStep(Entry entry, Map analysisMap) String key = entry.getKey(); Map analysisStepMap = entry.getValue(); switch (key) { + case "failedVariantFilter": + return makeFailedVariantFilter(); case "intervalFilter": return makeIntervalFilter(analysisStepMap); case "geneIdFilter": @@ -319,15 +333,15 @@ private AnalysisStep makeAnalysisStep(Entry entry, Map analysisMap) case "priorityScoreFilter": return makePriorityScoreFilter(analysisStepMap); case "regulatoryFeatureFilter": - return makeRegulatoryFeatureFilter(analysisStepMap); + return makeRegulatoryFeatureFilter(); case "omimPrioritiser": return prioritiserFactory.makeOmimPrioritiser(); case "hiPhivePrioritiser": - return makeHiPhivePrioritiser(analysisStepMap, parseHpoIds(analysisMap)); + return makeHiPhivePrioritiser(analysisStepMap); case "phivePrioritiser": - return prioritiserFactory.makePhivePrioritiser(parseHpoIds(analysisMap)); + return prioritiserFactory.makePhivePrioritiser(); case "phenixPrioritiser": - return prioritiserFactory.makePhenixPrioritiser(parseHpoIds(analysisMap)); + return prioritiserFactory.makePhenixPrioritiser(); case "exomeWalkerPrioritiser": return makeWalkerPrioritiser(analysisStepMap); default: @@ -337,6 +351,10 @@ private AnalysisStep makeAnalysisStep(Entry entry, Map analysisMap) } } + private FailedVariantFilter makeFailedVariantFilter() { + return new FailedVariantFilter(); + } + private IntervalFilter makeIntervalFilter(Map options) { String interval = options.get("interval"); if (interval == null) { @@ -364,7 +382,7 @@ private VariantEffectFilter makeVariantEffectFilter(Map options) { VariantEffect variantEffect = VariantEffect.valueOf(effect); variantEffects.add(variantEffect); } catch (IllegalArgumentException ex) { - throw new AnalysisParserException(String.format("Illegal VariantEffect: '%s'.%nPermitted effects are any of: %s.", effect, EnumSet.allOf(VariantEffect.class)), options); + throw new AnalysisParserException(String.format("Illegal VariantEffect: '%s'.%nPermitted effects are any of: %s.", effect, EnumSet.allOf(VariantEffect.class)), options, ex); } } return new VariantEffectFilter(EnumSet.copyOf(variantEffects)); @@ -413,7 +431,7 @@ private Set parseFrequencySources(Map options) FrequencySource frequencySource = FrequencySource.valueOf(source); sources.add(frequencySource); } catch (IllegalArgumentException ex) { - throw new AnalysisParserException(String.format("Illegal FrequencySource: '%s'.%nPermitted sources are any of: %s.", source, EnumSet.allOf(FrequencySource.class)), options); + throw new AnalysisParserException(String.format("Illegal FrequencySource: '%s'.%nPermitted sources are any of: %s.", source, EnumSet.allOf(FrequencySource.class)), options, ex); } } if (sources.isEmpty()) { @@ -444,7 +462,7 @@ private Set parsePathogenicitySources(Map o PathogenicitySource pathogenicitySource = PathogenicitySource.valueOf(source); sources.add(pathogenicitySource); } catch (IllegalArgumentException ex) { - throw new AnalysisParserException(String.format("Illegal PathogenicitySource: '%s'.%nPermitted sources are any of: %s.", source, EnumSet.allOf(PathogenicitySource.class)), options); + throw new AnalysisParserException(String.format("Illegal PathogenicitySource: '%s'.%nPermitted sources are any of: %s.", source, EnumSet.allOf(PathogenicitySource.class)), options, ex); } } if (sources.isEmpty()) { @@ -467,20 +485,25 @@ private PriorityScoreFilter makePriorityScoreFilter(Map options) return new PriorityScoreFilter(priorityType, minPriorityScore.floatValue()); } - private VariantFilter makeRegulatoryFeatureFilter(Map options) { + private VariantFilter makeRegulatoryFeatureFilter() { return new RegulatoryFeatureFilter(); } private InheritanceFilter makeInheritanceFilter(ModeOfInheritance modeOfInheritance) { - if (modeOfInheritance == ModeOfInheritance.UNINITIALIZED) { + if (modeOfInheritance == ModeOfInheritance.ANY) { logger.info("Not making an inheritance filter for {} mode of inheritance", modeOfInheritance); return null; } return new InheritanceFilter(modeOfInheritance); } - private HiPhivePriority makeHiPhivePrioritiser(Map options, List hpoIds) { - HiPhiveOptions hiPhiveOptions = new HiPhiveOptions(); + private HiPhivePriority makeHiPhivePrioritiser(Map options) { + HiPhiveOptions hiPhiveOptions = makeHiPhiveOptions(options); + logger.info("Made {}", hiPhiveOptions); + return prioritiserFactory.makeHiPhivePrioritiser(hiPhiveOptions); + } + + private HiPhiveOptions makeHiPhiveOptions(Map options) { if (!options.isEmpty()) { String diseaseId = options.get("diseaseId"); if (diseaseId == null) { @@ -494,10 +517,13 @@ private HiPhivePriority makeHiPhivePrioritiser(Map options, List if (runParams == null) { runParams = ""; } - hiPhiveOptions = new HiPhiveOptions(diseaseId, candidateGeneSymbol, runParams); - logger.info("Made {}", hiPhiveOptions); + return HiPhiveOptions.builder() + .diseaseId(diseaseId) + .candidateGeneSymbol(candidateGeneSymbol) + .runParams(runParams) + .build(); } - return prioritiserFactory.makeHiPhivePrioritiser(hpoIds, hiPhiveOptions); + return HiPhiveOptions.DEFAULT; } private ExomeWalkerPriority makeWalkerPrioritiser(Map options) { @@ -512,9 +538,17 @@ private ExomeWalkerPriority makeWalkerPrioritiser(Map options) { protected static class AnalysisParserException extends RuntimeException { + AnalysisParserException(String message) { + super(message); + } + AnalysisParserException(String message, Map options) { super(message + " was " + new Yaml().dump(options)); } + + AnalysisParserException(String message, Map options, Exception e) { + super(message + " was " + new Yaml().dump(options), e); + } } } diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisResults.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisResults.java new file mode 100644 index 000000000..4f5048d46 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisResults.java @@ -0,0 +1,201 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import de.charite.compbio.jannovar.pedigree.Pedigree; +import htsjdk.variant.vcf.VCFHeader; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.nio.file.Path; +import java.util.Collections; +import java.util.List; +import java.util.Objects; + +import static java.util.stream.Collectors.toList; + +/** + * The results of an Exomiser Analysis run. + * + * @author Jules Jacobsen + */ +public class AnalysisResults { + + private final Path vcfPath; + private final Path pedPath; + private final String probandSampleName; + + @JsonIgnore + private final VCFHeader vcfHeader; + @JsonIgnore + private final List sampleNames; + @JsonIgnore + private final Pedigree pedigree; + + private final List genes; + @JsonIgnore + private final List variantEvaluations; + + public AnalysisResults(Builder builder) { + this.vcfPath = builder.vcfPath; + this.pedPath = builder.pedPath; + this.probandSampleName = builder.probandSampleName; + + this.vcfHeader = builder.vcfHeader; + this.sampleNames = builder.sampleNames; + this.pedigree = builder.pedigree; + + this.genes = builder.genes; + this.variantEvaluations = builder.variantEvaluations; + } + + public Path getVcfPath() { + return vcfPath; + } + + public Path getPedPath() { + return pedPath; + } + + public String getProbandSampleName() { + return probandSampleName; + } + + public VCFHeader getVcfHeader() { + return vcfHeader; + } + + /** + * @return List of Strings representing the sample names in the VCF file. + */ + public List getSampleNames() { + return sampleNames; + } + + public Pedigree getPedigree() { + return pedigree; + } + + public List getGenes() { + return genes; + } + + public List getVariantEvaluations() { + return variantEvaluations; + } + + @JsonIgnore + public List getUnAnnotatedVariantEvaluations() { + return variantEvaluations.stream().filter(varEval -> !varEval.hasAnnotations()).collect(toList()); + } + + @Override + public int hashCode() { + return Objects.hash(vcfPath, pedPath, probandSampleName, sampleNames, variantEvaluations, genes); + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + AnalysisResults that = (AnalysisResults) o; + return Objects.equals(vcfPath, that.vcfPath) && + Objects.equals(pedPath, that.pedPath) && + Objects.equals(probandSampleName, that.probandSampleName) && + Objects.equals(sampleNames, that.sampleNames) && + Objects.equals(variantEvaluations, that.variantEvaluations) && + Objects.equals(genes, that.genes); + } + + @Override + public String toString() { + return "AnalysisResults{" + "vcfPath=" + vcfPath + ", pedPath=" + pedPath + '}'; + } + + public static Builder builder() { + return new Builder(); + } + + public static class Builder { + + private Path vcfPath; + private Path pedPath = null; + private String probandSampleName = ""; + + private VCFHeader vcfHeader = new VCFHeader(); + private List sampleNames = Collections.emptyList(); + private Pedigree pedigree = Pedigree.constructSingleSamplePedigree("unknown sample"); + + private List variantEvaluations = Collections.emptyList(); + private List genes = Collections.emptyList(); + + public Builder probandSampleName(String probandSampleName) { + this.probandSampleName = probandSampleName; + return this; + } + + public Builder sampleNames(List sampleNames) { + this.sampleNames = sampleNames; + return this; + } + public Builder vcfPath(Path vcfPath) { + this.vcfPath = vcfPath; + return this; + } + + public Builder pedPath(Path pedPath) { + this.pedPath = pedPath; + return this; + } + + public Builder vcfHeader(VCFHeader vcfHeader) { + this.vcfHeader = vcfHeader; + return this; + } + + public Builder variantEvaluations(List variantList) { + this.variantEvaluations = variantList; + return this; + } + + public Builder pedigree(Pedigree pedigree) { + this.pedigree = pedigree; + return this; + } + + public Builder genes(List geneList) { + this.genes = geneList; + return this; + } + + public AnalysisResults build() { + return new AnalysisResults(this); + } + + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunner.java new file mode 100644 index 000000000..b458025bb --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunner.java @@ -0,0 +1,30 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +/** + * + * @since 7.0.0 + * @author Jules Jacobsen + */ +public interface AnalysisRunner { + AnalysisResults run(Analysis analysis); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStep.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStep.java new file mode 100644 index 000000000..069d64429 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStep.java @@ -0,0 +1,70 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import org.monarchinitiative.exomiser.core.filters.InheritanceFilter; +import org.monarchinitiative.exomiser.core.filters.PriorityScoreFilter; +import org.monarchinitiative.exomiser.core.filters.VariantFilter; +import org.monarchinitiative.exomiser.core.prioritisers.OMIMPriority; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; + +/** + * Interface to enable Filters and Prioritisers to be grouped together and provide some default utility methods. + * + * @since 7.0.0 + * @author Jules Jacobsen + */ +public interface AnalysisStep { + + enum AnalysisStepType {VARIANT_FILTER, GENE_ONLY_DEPENDENT, INHERITANCE_MODE_DEPENDENT} + + @JsonIgnore + default boolean isInheritanceModeDependent() { + return InheritanceFilter.class.isInstance(this) || OMIMPriority.class.isInstance(this); + } + + @JsonIgnore + default boolean isVariantFilter() { + return VariantFilter.class.isInstance(this); + } + + @JsonIgnore + default boolean isOnlyGeneDependent() { + if (isInheritanceModeDependent()) { + //note that both InheritanceFilter and OMIMPriority operate solely on genes, yet have a dependence on filtered variants + //hence their exclusion here + return false; + } + return Prioritiser.class.isInstance(this) || PriorityScoreFilter.class.isInstance(this); + } + + @JsonIgnore + default AnalysisStepType getType() { + if (isInheritanceModeDependent()) { + return AnalysisStepType.INHERITANCE_MODE_DEPENDENT; + } + if (isVariantFilter()) { + return AnalysisStepType.VARIANT_FILTER; + } + return AnalysisStepType.GENE_ONLY_DEPENDENT; + } +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepChecker.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepChecker.java similarity index 88% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepChecker.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepChecker.java index bffd327bd..b119ba755 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepChecker.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepChecker.java @@ -1,43 +1,41 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.analysis; +package org.monarchinitiative.exomiser.core.analysis; -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.PriorityScoreFilter; -import de.charite.compbio.exomiser.core.filters.VariantFilter; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriority; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.filters.InheritanceFilter; +import org.monarchinitiative.exomiser.core.filters.PriorityScoreFilter; +import org.monarchinitiative.exomiser.core.filters.VariantFilter; +import org.monarchinitiative.exomiser.core.prioritisers.OMIMPriority; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; -import java.util.ArrayList; import java.util.Comparator; -import java.util.Iterator; import java.util.List; import java.util.Set; import static java.util.stream.Collectors.toList; import static java.util.stream.Collectors.toSet; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - /** * Checks a given list of analysis steps for correct ordering of steps. This is * to prevent users from trying to do things which will result in erroneous @@ -47,7 +45,7 @@ * @since 7.0.0 * @author Jules Jacobsen */ -public class AnalysisStepChecker { +class AnalysisStepChecker { Logger logger = LoggerFactory.getLogger(AnalysisStepChecker.class); diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/PassOnlyAnalysisRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/PassOnlyAnalysisRunner.java new file mode 100644 index 000000000..9a9021271 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/PassOnlyAnalysisRunner.java @@ -0,0 +1,105 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import org.monarchinitiative.exomiser.core.filters.SimpleGeneFilterRunner; +import org.monarchinitiative.exomiser.core.filters.SparseVariantFilterRunner; +import org.monarchinitiative.exomiser.core.filters.VariantFilter; +import org.monarchinitiative.exomiser.core.genome.GeneFactory; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.genome.VariantFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.List; +import java.util.Map; +import java.util.function.Function; +import java.util.function.Predicate; +import java.util.stream.Stream; + +import static java.util.stream.Collectors.toList; + +/** + * @since 7.0.0 + * @author Jules Jacobsen + */ +class PassOnlyAnalysisRunner extends AbstractAnalysisRunner { + + private static final Logger logger = LoggerFactory.getLogger(PassOnlyAnalysisRunner.class); + + PassOnlyAnalysisRunner(GeneFactory geneFactory, VariantFactory variantFactory, VariantDataService variantDataService) { + super(geneFactory, variantFactory, variantDataService, new SparseVariantFilterRunner(), new SimpleGeneFilterRunner()); + } + + @Override + protected Predicate isAssociatedWithKnownGene(Map genes) { + return variantEvaluation -> { + //Only load the variant if the gene has passed the other filters + //this should drastically reduce the number of collected variants + if(genes.containsKey(variantEvaluation.getGeneSymbol())) { + Gene gene = genes.get(variantEvaluation.getGeneSymbol()); + return gene.passedFilters(); + } + return false; + }; + } + + @Override + protected Predicate runVariantFilters(List variantFilters) { + return variantEvaluation -> { + //loop through the filters and only run if the variantEvaluation has passed all prior filters + variantFilters.stream() + .filter(filter -> variantEvaluation.passedFilters()) + .forEach(filter -> variantFilterRunner.run(filter, variantEvaluation)); + + return variantEvaluation.passedFilters(); + }; + } + + @Override + protected Stream getGenesWithVariants(Map allGenes) { + return allGenes.values() + .stream() + .filter(Gene::hasVariants) + .filter(Gene::passedFilters) + .map(removeFailedVariants()); + } + + private Function removeFailedVariants() { + return gene -> { + gene.getVariantEvaluations().removeIf(variantFailedFilters()); + return gene; + }; + } + + private Predicate variantFailedFilters() { + return variantEvaluation -> !variantEvaluation.passedFilters(); + } + + @Override + protected List getFinalVariantList(List variants) { + return variants.stream() + .filter(VariantEvaluation::passedFilters) + .collect(toList()); + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SampleMismatchException.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SampleMismatchException.java new file mode 100644 index 000000000..77ce252b8 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SampleMismatchException.java @@ -0,0 +1,30 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +/** + * @author Jules Jacobsen + */ +public class SampleMismatchException extends RuntimeException { + public SampleMismatchException(String message) { + super(message); + } +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/Settings.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/Settings.java similarity index 79% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/Settings.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/Settings.java index 2c336a3a3..2562bbf5c 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/Settings.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/Settings.java @@ -1,46 +1,44 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.analysis; +package org.monarchinitiative.exomiser.core.analysis; +import com.fasterxml.jackson.annotation.JsonCreator; import com.fasterxml.jackson.annotation.JsonIgnore; import com.fasterxml.jackson.annotation.JsonProperty; import com.fasterxml.jackson.annotation.JsonSetter; import com.fasterxml.jackson.databind.annotation.JsonDeserialize; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.filters.FilterSettings; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.prioritisers.PrioritiserSettings; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import de.charite.compbio.exomiser.core.writers.OutputSettings; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.EnumSet; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Objects; -import java.util.Set; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.filters.FilterSettings; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.prioritisers.PrioritiserSettings; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; +import org.monarchinitiative.exomiser.core.writers.OutputSettings; import org.slf4j.Logger; import org.slf4j.LoggerFactory; +import java.nio.file.Path; +import java.util.*; + /** * Class for storing the options data required for running the Exomiser. * @@ -63,12 +61,15 @@ public class Settings implements FilterSettings, PrioritiserSettings, OutputSett //REQUIRED INPUT variables private final Path vcfFilePath; //required, no default - private final Path pedFilePath; //might be required if vcf if a multi-sample family vcf + private final Path pedFilePath; //required if vcf if a multi-sample family vcf + private final String probandSampleName; //required if vcf if a multi-sample family vcf //ANALYSIS OPTIONS private final boolean runFullAnalysis; //FILTER variables + //remove-failed + private boolean removeFailedVariants; //max-freq (command-line was: freq_threshold, refered to variable: frequency_threshold) private final float maximumFrequency; //Quality threshold for variants. Corresponds to QUAL column in VCF file. @@ -97,7 +98,7 @@ public class Settings implements FilterSettings, PrioritiserSettings, OutputSett private final List hpoIds; //seed-genes (command-line was: SeedGenes, refered to variable: entrezSeedGenes) private final List seedGeneList; - private final String exomiser2Params; + private final String hiPhiveParams; //OUTPUT variables private final boolean outputPassVariantsOnly; @@ -116,6 +117,11 @@ public class Settings implements FilterSettings, PrioritiserSettings, OutputSett private boolean isValid = true; + @JsonCreator + public static SettingsBuilder builder() { + return new SettingsBuilder(); + } + public static class SettingsBuilder { //BUILD METADATA @@ -124,12 +130,14 @@ public static class SettingsBuilder { //INPUT file options private Path vcfFilePath; //required, no default - private Path pedFilePath = null; + private Path pedFilePath = null; //required if vcf if a multi-sample family vcf + private String probandSampleName = ""; //required if vcf if a multi-sample family vcf //ANALYSIS options private boolean runFullAnalysis = false; //FILTER options + private boolean removeFailedVariants = false; private float maximumFrequency = 100.00f; private float minimumQuality = 0; private GeneticInterval geneticInterval = null; @@ -143,11 +151,11 @@ public static class SettingsBuilder { //PRIORITISER options private String candidateGene = ""; - private ModeOfInheritance modeOfInheritance = ModeOfInheritance.UNINITIALIZED; + private ModeOfInheritance modeOfInheritance = ModeOfInheritance.ANY; private String diseaseId = ""; private List hpoIds = new ArrayList(); private List seedGeneList = new ArrayList(); - private String exomiser2Params = ""; + private String hiPhiveParams = ""; //OUTPUT options private boolean outputPassVariantsOnly = false; @@ -157,6 +165,8 @@ public static class SettingsBuilder { private String diseaseGeneFamilyName = ""; + private SettingsBuilder() {} + @JsonIgnore public SettingsBuilder buildVersion(String buildVersion) { this.buildVersion = buildVersion; @@ -181,6 +191,11 @@ public SettingsBuilder pedFilePath(Path pedFilePath) { return this; } + public SettingsBuilder probandSampleName(String probandSampleName) { + this.probandSampleName = probandSampleName; + return this; + } + @JsonSetter public SettingsBuilder runFullAnalysis(boolean runFullAnalysis) { this.runFullAnalysis = runFullAnalysis; @@ -212,11 +227,17 @@ public SettingsBuilder geneticInterval(GeneticInterval value) { } @JsonSetter("keepNonPathogenic") - public SettingsBuilder removePathFilterCutOff(boolean value) { + public SettingsBuilder keepNonPathogenic(boolean value) { removePathFilterCutOff = value; return this; } + @JsonSetter("removeFailed") + public SettingsBuilder removeFailed(boolean value) { + removeFailedVariants = value; + return this; + } + @JsonSetter public SettingsBuilder removeKnownVariants(boolean value) { removeKnownVariants = value; @@ -248,12 +269,12 @@ public SettingsBuilder diseaseId(String value) { } @JsonSetter - public SettingsBuilder exomiser2Params(String value) { - exomiser2Params = value; + public SettingsBuilder hiPhiveParams(String value) { + hiPhiveParams = value; return this; } - @JsonSetter + @JsonSetter("hpoIds") public SettingsBuilder hpoIdList(List value) { hpoIds = value; return this; @@ -266,7 +287,7 @@ public SettingsBuilder seedGeneList(List value) { } @JsonSetter - public SettingsBuilder genesToKeepList(Set value) { + public SettingsBuilder genesToKeep(Set value) { geneIdsToKeep = value; return this; } @@ -319,6 +340,7 @@ private Settings(SettingsBuilder builder) { isValid = false; } pedFilePath = builder.pedFilePath; + probandSampleName = builder.probandSampleName; //analysis runFullAnalysis = builder.runFullAnalysis; @@ -327,6 +349,7 @@ private Settings(SettingsBuilder builder) { prioritiserType = builder.prioritiserType; //FILTER options + removeFailedVariants = builder.removeFailedVariants; maximumFrequency = builder.maximumFrequency; minimumQuality = builder.minimumQuality; geneticInterval = builder.geneticInterval; @@ -341,7 +364,7 @@ private Settings(SettingsBuilder builder) { diseaseId = builder.diseaseId; hpoIds = builder.hpoIds; seedGeneList = builder.seedGeneList; - exomiser2Params = builder.exomiser2Params; + hiPhiveParams = builder.hiPhiveParams; //OUTPUT options outputPassVariantsOnly = builder.outputPassVariantsOnly; @@ -374,7 +397,11 @@ public Path getPedPath() { @JsonProperty public Path getPedFileName() { - return ((pedFilePath == null) ? null : pedFilePath.getFileName()); + return pedFilePath == null ? null : pedFilePath.getFileName(); + } + + public String getProbandSampleName() { + return probandSampleName; } @JsonProperty @@ -388,6 +415,7 @@ public PriorityType getPrioritiserType() { return prioritiserType; } + @JsonProperty @Override public float getMaximumFrequency() { @@ -406,12 +434,18 @@ public GeneticInterval getGeneticInterval() { return geneticInterval; } - @JsonProperty + @JsonProperty("keepNonPathogenic") @Override - public boolean removePathFilterCutOff() { + public boolean keepNonPathogenicVariants() { return keepNonPathogenicVariants; } + @JsonProperty + @Override + public boolean removeFailedVariants() { + return removeFailedVariants; + } + @JsonProperty @Override public boolean removeKnownVariants() { @@ -444,8 +478,8 @@ public String getDiseaseId() { @JsonProperty @Override - public String getExomiser2Params() { - return exomiser2Params; + public String getHiPhiveParams() { + return hiPhiveParams; } @JsonProperty @@ -507,6 +541,7 @@ public int hashCode() { hash = 11 * hash + Objects.hashCode(this.buildTimestamp); hash = 11 * hash + Objects.hashCode(this.vcfFilePath); hash = 11 * hash + Objects.hashCode(this.pedFilePath); + hash = 11 * hash + Objects.hashCode(this.probandSampleName); hash = 11 * hash + (this.runFullAnalysis ? 1 : 0); hash = 11 * hash + Float.floatToIntBits(this.maximumFrequency); hash = 11 * hash + Float.floatToIntBits(this.minimumQuality); @@ -521,7 +556,7 @@ public int hashCode() { hash = 11 * hash + Objects.hashCode(this.diseaseId); hash = 11 * hash + Objects.hashCode(this.hpoIds); hash = 11 * hash + Objects.hashCode(this.seedGeneList); - hash = 11 * hash + Objects.hashCode(this.exomiser2Params); + hash = 11 * hash + Objects.hashCode(this.hiPhiveParams); hash = 11 * hash + (this.outputPassVariantsOnly ? 1 : 0); hash = 11 * hash + this.numberOfGenesToShow; hash = 11 * hash + Objects.hashCode(this.outputPrefix); @@ -552,6 +587,9 @@ public boolean equals(Object obj) { if (!Objects.equals(this.pedFilePath, other.pedFilePath)) { return false; } + if (!Objects.equals(this.probandSampleName, other.probandSampleName)) { + return false; + } if (this.runFullAnalysis != other.runFullAnalysis) { return false; } @@ -594,7 +632,7 @@ public boolean equals(Object obj) { if (!Objects.equals(this.seedGeneList, other.seedGeneList)) { return false; } - if (!Objects.equals(this.exomiser2Params, other.exomiser2Params)) { + if (!Objects.equals(this.hiPhiveParams, other.hiPhiveParams)) { return false; } if (this.outputPassVariantsOnly != other.outputPassVariantsOnly) { @@ -612,15 +650,12 @@ public boolean equals(Object obj) { if (!Objects.equals(this.diseaseGeneFamilyName, other.diseaseGeneFamilyName)) { return false; } - if (this.isValid != other.isValid) { - return false; - } - return true; + return this.isValid == other.isValid; } @Override public String toString() { - return "ExomiserSettings{" + "vcfFilePath=" + vcfFilePath + ", pedFilePath=" + pedFilePath + ", prioritiser=" + prioritiserType + ", maximumFrequency=" + maximumFrequency + ", minimumQuality=" + minimumQuality + ", geneticInterval=" + geneticInterval + ", removePathFilterCutOff=" + keepNonPathogenicVariants + ", removeDbSnp=" + removeKnownVariants + ", removeOffTargetVariants=" + keepOffTargetVariants + ", candidateGene=" + candidateGene + ", modeOfInheritance=" + modeOfInheritance + ", diseaseId=" + diseaseId + ", hpoIds=" + hpoIds + ", seedGeneList=" + seedGeneList + ", numberOfGenesToShow=" + numberOfGenesToShow + ", outFileName=" + outputPrefix + ", outputFormat=" + outputFormats + ", diseaseGeneFamilyName=" + diseaseGeneFamilyName + ", buildVersion=" + buildVersion + ", buildTimestamp=" + buildTimestamp + '}'; + return "ExomiserSettings{" + "vcfFilePath=" + vcfFilePath + ", pedFilePath=" + pedFilePath + ", probandSampleName=" + probandSampleName + ", prioritiser=" + prioritiserType + ", maximumFrequency=" + maximumFrequency + ", minimumQuality=" + minimumQuality + ", geneticInterval=" + geneticInterval + ", keepNonPathogenicVariants=" + keepNonPathogenicVariants + ", removeDbSnp=" + removeKnownVariants + ", removeOffTargetVariants=" + keepOffTargetVariants + ", candidateGene=" + candidateGene + ", modeOfInheritance=" + modeOfInheritance + ", diseaseId=" + diseaseId + ", hpoIds=" + hpoIds + ", seedGeneList=" + seedGeneList + ", numberOfGenesToShow=" + numberOfGenesToShow + ", outFileName=" + outputPrefix + ", outputFormat=" + outputFormats + ", diseaseGeneFamilyName=" + diseaseGeneFamilyName + ", buildVersion=" + buildVersion + ", buildTimestamp=" + buildTimestamp + '}'; } } diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SettingsParser.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SettingsParser.java new file mode 100644 index 000000000..dd3c80654 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SettingsParser.java @@ -0,0 +1,204 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import com.google.common.collect.Sets; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.monarchinitiative.exomiser.core.Exomiser; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PrioritiserSettings; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactory; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +import java.util.ArrayList; +import java.util.List; +import java.util.Set; + +/** + * Will set-up an {@link Exomiser} exome {@link Analysis} according to the original + * Exomiser protocol. If you wish to analyse a whole genome you will want to set + * up an {@link Analysis} either programmatically with an {@link AnalysisFactory} + * or via a YAML input file through the {@link AnalysisParser} + * + * @since 7.0.0 + * @author Jules Jacobsen + */ +@Component +public class SettingsParser { + + private static final Logger logger = LoggerFactory.getLogger(SettingsParser.class); + + public static final Set NON_EXONIC_VARIANT_EFFECTS = Sets.immutableEnumSet( + VariantEffect.UPSTREAM_GENE_VARIANT, + VariantEffect.INTERGENIC_VARIANT, + VariantEffect.DOWNSTREAM_GENE_VARIANT, + VariantEffect.CODING_TRANSCRIPT_INTRON_VARIANT, + VariantEffect.NON_CODING_TRANSCRIPT_INTRON_VARIANT, + VariantEffect.SYNONYMOUS_VARIANT, + VariantEffect.SPLICE_REGION_VARIANT, + VariantEffect.REGULATORY_REGION_VARIANT + ); + + private static final Set MISSENSE_VARIANT_PATH_SOURCES = Sets.immutableEnumSet( + PathogenicitySource.POLYPHEN, PathogenicitySource.MUTATION_TASTER, PathogenicitySource.SIFT); + + private final PriorityFactory prioritiserFactory; + private final VariantDataService variantDataService; + + @Autowired + public SettingsParser(PriorityFactory prioritiserFactory, VariantDataService variantDataService) { + this.prioritiserFactory = prioritiserFactory; + this.variantDataService = variantDataService; + } + + /** + * Sets up an Analysis using the published Exomiser algorithm where variants + * are filtered first, then genes and finally the prioritisers are run. + * + * @param settings + * @return + */ + public Analysis parse(Settings settings) { + logger.info("SETTING-UP ANALYSIS"); + + return Analysis.builder() + .vcfPath(settings.getVcfPath()) + .pedPath(settings.getPedPath()) + .probandSampleName(settings.getProbandSampleName()) + .modeOfInheritance(settings.getModeOfInheritance()) + .hpoIds(populateHpoIdsIfEmpty(settings.getHpoIds(), settings.getDiseaseId())) + .frequencySources(FrequencySource.ALL_EXTERNAL_FREQ_SOURCES) + .pathogenicitySources(MISSENSE_VARIANT_PATH_SOURCES) + .analysisMode(makeAnalysisMode(settings.runFullAnalysis())) + .steps(makeAnalysisSteps(settings, settings)) + .build(); + } + + private List populateHpoIdsIfEmpty(List hpoIds, String diseaseId) { + if (hpoIds.isEmpty()) { + logger.info("HPO terms have not been specified. Setting HPO IDs using disease annotations for {}", diseaseId); + return prioritiserFactory.getHpoIdsForDiseaseId(diseaseId); + } + return hpoIds; + } + + private AnalysisMode makeAnalysisMode(boolean runFullAnalysis) { + return runFullAnalysis ? AnalysisMode.FULL : AnalysisMode.SPARSE; + } + + private List makeAnalysisSteps(FilterSettings filterSettings, PrioritiserSettings prioritiserSettings) { + List steps = new ArrayList<>(); + steps.addAll(makeFilters(filterSettings)); + //Prioritisers should ALWAYS run last. + steps.addAll(makePrioritisers(prioritiserSettings)); + steps.forEach(step -> logger.info("ADDING ANALYSIS STEP {}", step)); + return steps; + } + + private List makeFilters(FilterSettings filterSettings) { + List filters = new ArrayList<>(); + //don't change the order here - variants should ALWAYS be filtered before + //genes have their inheritance modes filtered otherwise the inheritance mode will break leading to altered + //predictions downstream as we only want to test the mode for candidate variants. + //inheritance modes are needed even if we don't have an inheritance gene filter set as the OMIM prioritiser relies on it + filters.addAll(makeVariantFilters(filterSettings)); + filters.addAll(makeGeneFilters(filterSettings)); + return filters; + } + + private List makeVariantFilters(FilterSettings settings) { + List variantFilters = new ArrayList<>(); + //IMPORTANT: These are ordered by increasing computational difficulty and + //the number of variants they will remove. + //Don't change them as this will negatively effect performance. + //FAILED VARIANTS + if (settings.removeFailedVariants()) { + variantFilters.add(new FailedVariantFilter()); + } + //GENE_ID + if (!settings.getGenesToKeep().isEmpty()) { + variantFilters.add(new EntrezGeneIdFilter(settings.getGenesToKeep())); + } + //INTERVAL + if (settings.getGeneticInterval() != null) { + variantFilters.add(new IntervalFilter(settings.getGeneticInterval())); + } + //TARGET + //this would make more sense to be called 'removeOffTargetVariants' + if (settings.keepOffTargetVariants() == false) { + //add off target variant effect here + variantFilters.add(new VariantEffectFilter(NON_EXONIC_VARIANT_EFFECTS)); + } + //QUALITY + if (settings.getMinimumQuality() != 0) { + variantFilters.add(new QualityFilter(settings.getMinimumQuality())); + } + //KNOWN VARIANTS + if (settings.removeKnownVariants()) { + variantFilters.add(new FrequencyDataProvider(variantDataService, FrequencySource.ALL_EXTERNAL_FREQ_SOURCES, new KnownVariantFilter())); + } + //FREQUENCY + variantFilters.add(new FrequencyDataProvider(variantDataService, FrequencySource.ALL_EXTERNAL_FREQ_SOURCES, new FrequencyFilter(settings.getMaximumFrequency()))); + //PATHOGENICITY + // if keeping off-target variants need to remove the pathogenicity cutoff to ensure that these variants always + // pass the pathogenicity filter and still get scored for pathogenicity + variantFilters.add(new PathogenicityDataProvider(variantDataService, MISSENSE_VARIANT_PATH_SOURCES, new PathogenicityFilter(settings.keepNonPathogenicVariants()))); + return variantFilters; + } + + private List makeGeneFilters(FilterSettings settings) { + List geneFilters = new ArrayList<>(); + //INHERITANCE + if (settings.getModeOfInheritance() != ModeOfInheritance.ANY) { + geneFilters.add(new InheritanceFilter(settings.getModeOfInheritance())); + } + return geneFilters; + } + + private List makePrioritisers(PrioritiserSettings settings) { + List prioritisers = new ArrayList<>(); + + PriorityType prioritiserType = settings.getPrioritiserType(); + if (prioritiserType == PriorityType.NONE) { + return prioritisers; + } + + //always run OMIM unless the user specified what they really don't want to run any prioritisers + Prioritiser omimPrioritiser = prioritiserFactory.makeOmimPrioritiser(); + prioritisers.add(omimPrioritiser); + //don't add OMIM prioritiser twice to the list + if (prioritiserType != PriorityType.OMIM_PRIORITY) { + Prioritiser prioritiser = prioritiserFactory.makePrioritiser(settings); + prioritisers.add(prioritiser); + } + return prioritisers; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SimpleAnalysisRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SimpleAnalysisRunner.java new file mode 100644 index 000000000..34ebd43e5 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SimpleAnalysisRunner.java @@ -0,0 +1,65 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import org.monarchinitiative.exomiser.core.filters.SimpleGeneFilterRunner; +import org.monarchinitiative.exomiser.core.filters.SimpleVariantFilterRunner; +import org.monarchinitiative.exomiser.core.filters.VariantFilter; +import org.monarchinitiative.exomiser.core.genome.GeneFactory; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.genome.VariantFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.List; +import java.util.Map; +import java.util.function.Predicate; + +/** + * + * @since 7.0.0 + * @author Jules Jacobsen + */ +class SimpleAnalysisRunner extends AbstractAnalysisRunner { + + SimpleAnalysisRunner(GeneFactory geneFactory, VariantFactory variantFactory, VariantDataService variantDataService) { + super(geneFactory, variantFactory, variantDataService, new SimpleVariantFilterRunner(), new SimpleGeneFilterRunner()); + } + + @Override + protected Predicate isAssociatedWithKnownGene(Map genes) { + return variantEvaluation -> genes.containsKey(variantEvaluation.getGeneSymbol()); + } + + @Override + protected Predicate runVariantFilters(List variantFilters) { + return variantEvaluation -> { + //loop through the filters and run them over the variantEvaluation according to the variantFilterRunner behaviour + variantFilters.stream().forEach(filter -> variantFilterRunner.run(filter, variantEvaluation)); + return true; + }; + } + + @Override + protected List getFinalVariantList(List variants) { + return variants; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SparseAnalysisRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SparseAnalysisRunner.java new file mode 100644 index 000000000..95fd54be6 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/SparseAnalysisRunner.java @@ -0,0 +1,69 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import org.monarchinitiative.exomiser.core.filters.SimpleGeneFilterRunner; +import org.monarchinitiative.exomiser.core.filters.SparseVariantFilterRunner; +import org.monarchinitiative.exomiser.core.filters.VariantFilter; +import org.monarchinitiative.exomiser.core.genome.GeneFactory; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.genome.VariantFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.List; +import java.util.Map; +import java.util.function.Predicate; + +/** + * Analysis runner - will run filters up until a filter fails a variant. + + * @since 7.0.0 + * @author Jules Jacobsen + */ +class SparseAnalysisRunner extends AbstractAnalysisRunner { + + SparseAnalysisRunner(GeneFactory geneFactory, VariantFactory variantFactory, VariantDataService variantDataService) { + super(geneFactory, variantFactory, variantDataService, new SparseVariantFilterRunner(), new SimpleGeneFilterRunner()); + } + + @Override + protected Predicate isAssociatedWithKnownGene(Map genes) { + return variantEvaluation -> genes.containsKey(variantEvaluation.getGeneSymbol()); + } + + @Override + protected Predicate runVariantFilters(List variantFilters) { + return variantEvaluation -> { + //loop through the filters and only run if the variantEvaluation has passed all prior filters + variantFilters.stream() + .filter(filter -> variantEvaluation.passedFilters()) + .forEach(filter -> variantFilterRunner.run(filter, variantEvaluation)); + //for sparse filtering we still want all the variants back, even if they failed the filtering stage - they will be reported as failed. + return true; + }; + } + + @Override + protected List getFinalVariantList(List variants) { + return variants; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/ChromosomalRegionIndex.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/ChromosomalRegionIndex.java new file mode 100644 index 000000000..2ed7bf374 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/ChromosomalRegionIndex.java @@ -0,0 +1,118 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis.util; + +import de.charite.compbio.jannovar.impl.intervals.IntervalArray; +import de.charite.compbio.jannovar.impl.intervals.IntervalEndExtractor; +import org.monarchinitiative.exomiser.core.model.ChromosomalRegion; +import org.monarchinitiative.exomiser.core.model.VariantCoordinates; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.*; + +/** + * Interval tree-backed index for chromosomal regions. It enables extremely fast in-memory lookups to find the regions + * in which a variant can be found. + * + * @author Jules Jacobsen + */ +public class ChromosomalRegionIndex { + + private static final Logger logger = LoggerFactory.getLogger(ChromosomalRegionIndex.class); + + private final Map> index; + + public ChromosomalRegionIndex(Collection chromosomalRegions) { + this.index = populateIndex(chromosomalRegions); + } + + private Map> populateIndex(Collection chromosomalRegions) { + Map> regionIndex = createRegionIndex(chromosomalRegions); + Map> intervalTreeIndex = createChromosomeIntervalTreeIndex(regionIndex); + logger.debug("Created index for {} chromosomes totalling {} regions", intervalTreeIndex.keySet().size(), chromosomalRegions.size()); + return intervalTreeIndex; + } + + private Map> createRegionIndex(Collection chromosomalRegions) { + Map> regionIndex = new HashMap<>(); + for (T region : chromosomalRegions) { + if (!regionIndex.containsKey(region.getChromosome())) { + Set regionsInChr = new LinkedHashSet<>(); + regionsInChr.add(region); + regionIndex.put(region.getChromosome(), regionsInChr); + } else { + regionIndex.get(region.getChromosome()).add(region); + } + } + return regionIndex; + } + + private Map> createChromosomeIntervalTreeIndex(Map> regionIndex) { + Map> index = new HashMap<>(); + for (Map.Entry> entry :regionIndex.entrySet()) { + Integer chrId = entry.getKey(); + IntervalArray intervalTree = new IntervalArray<>(entry.getValue(), new ChromosomalRegionEndExtractor()); + logger.debug("Chr: {} - {} regions", chrId, intervalTree.size()); + index.put(chrId, intervalTree); + } + return index; + } + + public boolean hasRegionContainingVariant(VariantCoordinates variant) { + return !getRegionsContainingVariant(variant).isEmpty(); + } + + public List getRegionsContainingVariant(VariantCoordinates variantCoordinates) { + int chromosome = variantCoordinates.getChromosome(); + int position = variantCoordinates.getPosition(); + return getRegionsOverlappingPosition(chromosome, position); + } + + /** + * Use one-based co-ordinates for this method. + * @param chromosome + * @param position + * @return + */ + public List getRegionsOverlappingPosition(int chromosome, int position) { + IntervalArray intervalTree = index.get(chromosome); + if (intervalTree == null) { + return Collections.emptyList(); + } + IntervalArray.QueryResult queryResult = intervalTree.findOverlappingWithPoint(position - 1); + return queryResult.getEntries(); + } + + private class ChromosomalRegionEndExtractor implements IntervalEndExtractor { + + @Override + public int getBegin(T region) { + return region.getStart() - 1; + } + + @Override + public int getEnd(T region) { + return region.getEnd(); + } + } + +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/GeneReassigner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/GeneReassigner.java similarity index 76% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/GeneReassigner.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/GeneReassigner.java index 4dd546d52..2abeb3c4f 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/analysis/util/GeneReassigner.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/GeneReassigner.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -22,18 +23,21 @@ * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.analysis.util; +package org.monarchinitiative.exomiser.core.analysis.util; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.annotation.Annotation; import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.TranscriptAnnotation; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import java.util.*; +import java.util.ArrayList; +import java.util.Collections; +import java.util.List; +import java.util.Map; import static java.util.stream.Collectors.toList; @@ -64,7 +68,7 @@ public GeneReassigner(PriorityType priorityType, Map allGenes, Chr logger.info("Made new GeneReassigner for {}", priorityType); } - public void reassignVariantToMostPhenotypicallySimilarGeneInTad(VariantEvaluation variantEvaluation) { + public void reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(VariantEvaluation variantEvaluation) { if (variantEvaluation.getVariantEffect() == VariantEffect.REGULATORY_REGION_VARIANT) { logger.debug("Checking gene assignment for {} chr={} pos={}", variantEvaluation.getVariantEffect(), variantEvaluation.getChromosome(), variantEvaluation.getPosition()); assignVariantToGeneWithHighestPhenotypeScore(variantEvaluation); @@ -75,14 +79,14 @@ private void assignVariantToGeneWithHighestPhenotypeScore(VariantEvaluation vari Gene geneWithHighestPhenotypeScore = null; Gene currentlyAssignedGene = allGenes.get(variantEvaluation.getGeneSymbol()); //assign this to the variant's current gene as we don't necessarily want ALL the regulatory region variants to clump into one gene. - float bestScore = prioritiserScore(currentlyAssignedGene); + double bestScore = prioritiserScore(currentlyAssignedGene); List genesInTad = getGenesInTadForVariant(variantEvaluation); for (String geneSymbol : genesInTad) { Gene gene = allGenes.get(geneSymbol); logger.debug("Checking gene {}", gene); if (gene != null && (gene.getPriorityResult(priorityType)) != null) { - float geneScore = prioritiserScore(gene); + double geneScore = prioritiserScore(gene); logger.debug("Gene {} in TAD has score {}", geneSymbol, geneScore); if (geneScore > bestScore) { bestScore = geneScore; @@ -100,7 +104,7 @@ private void assignVariantToGeneWithHighestPhenotypeScore(VariantEvaluation vari assignVariantToGene(variantEvaluation, geneWithHighestPhenotypeScore); } - private float prioritiserScore(Gene gene) { + private double prioritiserScore(Gene gene) { //TODO: local variable, only one call to get? Otherwise will throw NPE if not guarded against. return (gene.getPriorityResult(priorityType) == null)? 0f : gene.getPriorityResult(priorityType).getScore(); } @@ -124,28 +128,28 @@ private void assignVariantToGene(VariantEvaluation variantEvaluation, Gene gene) } public void reassignGeneToMostPhenotypicallySimilarGeneInAnnotations(VariantEvaluation variantEvaluation) { - List annotations = variantEvaluation.getAnnotations(); Gene geneWithHighestPhenotypeScore = null; VariantEffect variantEffectForTopHit = null; Gene currentlyAssignedGene = allGenes.get(variantEvaluation.getGeneSymbol()); - float bestScore = 0f; + double bestScore; if (currentlyAssignedGene == null){ // very rarely a variant just has a single annotation with no gene i.e. geneSymbol is . return; } - else { + else { bestScore = prioritiserScore(currentlyAssignedGene); } List geneSymbols = new ArrayList<>(); List variantEffects = new ArrayList<>(); - List newAnnotations = new ArrayList<>(); - for (Annotation a : annotations) { + List newAnnotations = new ArrayList<>(); + List annotations = variantEvaluation.getAnnotations(); + for (TranscriptAnnotation a : annotations) { String geneSymbol = a.getGeneSymbol(); geneSymbols.add(geneSymbol); - variantEffects.add(a.getMostPathogenicVarType()); + variantEffects.add(a.getVariantEffect()); newAnnotations.add(a); // hack to deal with fusion protein Jannovar nonsense - ? should the separate genes not be part of the annotation anyway - don't seem to be, should maybe not do this split - if (geneSymbol.contains("-")) { + if (geneSymbol.contains("-") && !geneSymbol.contains(".")) {// avoid RP11-489C13.1 type annotations String[] separateGeneSymbols = geneSymbol.split("-"); for (String separateGeneSymbol : separateGeneSymbols) { geneSymbols.add(separateGeneSymbol); @@ -155,13 +159,13 @@ public void reassignGeneToMostPhenotypicallySimilarGeneInAnnotations(VariantEval } } - Annotation bestAnnotation = null; + TranscriptAnnotation bestAnnotation = null; int i = 0; for (String geneSymbol : geneSymbols) { Gene gene = allGenes.get(geneSymbol); VariantEffect ve = variantEffects.get(i); if (gene != null && (gene.getPriorityResult(priorityType)) != null) { - float geneScore = prioritiserScore(gene); + double geneScore = prioritiserScore(gene); if (geneScore > bestScore) { bestScore = geneScore; geneWithHighestPhenotypeScore = gene; @@ -177,7 +181,7 @@ public void reassignGeneToMostPhenotypicallySimilarGeneInAnnotations(VariantEval i++; } // Keep original annotation if possible - used in RegFilter later on and for display - List finalAnnotations = new ArrayList<>(); + List finalAnnotations = new ArrayList<>(); if (bestAnnotation != null){ finalAnnotations.add(bestAnnotation); } @@ -189,6 +193,11 @@ public void reassignGeneToMostPhenotypicallySimilarGeneInAnnotations(VariantEval if (geneWithHighestPhenotypeScore == null) { return; } + + if (variantEffectForTopHit == null){ + // had one variant where this happened in Genomiser runs and breaks a lot of downstream code + return; + } /* Only reassign variant effect if it has not already been flagged by RegFeatureDao as a regulatory region variant. Otherwise TAD reassignment and subsequent reg feature filter fail to work as expected */ diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/GeneScorer.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/GeneScorer.java new file mode 100644 index 000000000..a0efd14fa --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/GeneScorer.java @@ -0,0 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis.util; + +import org.monarchinitiative.exomiser.core.model.Gene; + +import java.util.Collections; +import java.util.List; +import java.util.function.Consumer; + +/** + * + * @author Jules Jacobsen + */ +@FunctionalInterface +public interface GeneScorer { + + Consumer scoreGene(); + + default List scoreGenes(List genes) { + genes.forEach(scoreGene()); + Collections.sort(genes); + return genes; + } +} \ No newline at end of file diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/InheritanceModeAnalyser.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/InheritanceModeAnalyser.java new file mode 100644 index 000000000..28db97553 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/InheritanceModeAnalyser.java @@ -0,0 +1,221 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis.util; + +import com.google.common.collect.*; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import de.charite.compbio.jannovar.mendel.SubModeOfInheritance; +import de.charite.compbio.jannovar.mendel.bridge.CannotAnnotateMendelianInheritance; +import de.charite.compbio.jannovar.mendel.bridge.VariantContextMendelianAnnotator; +import de.charite.compbio.jannovar.pedigree.Genotype; +import de.charite.compbio.jannovar.pedigree.Pedigree; +import htsjdk.variant.variantcontext.Allele; +import htsjdk.variant.variantcontext.VariantContext; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.*; + +import static java.util.stream.Collectors.toList; + +/** + * This class allows us to do segregation analysis for the variants supplied to + * it i.e., to determine if they are compatible with autosomal recessive, + * autosomal dominant, or X-linked recessive inheritance. + * + * @author Jules Jacobsen + */ +public class InheritanceModeAnalyser { + + private static final Logger logger = LoggerFactory.getLogger(InheritanceModeAnalyser.class); + + private final ModeOfInheritance modeOfInheritance; + private final VariantContextMendelianAnnotator inheritanceAnnotator; + private final Set compatibleModes; + + public InheritanceModeAnalyser(ModeOfInheritance modeOfInheritance, Pedigree pedigree) { + this.modeOfInheritance = modeOfInheritance; + this.inheritanceAnnotator = new VariantContextMendelianAnnotator(pedigree, false, false); + this.compatibleModes = Sets.immutableEnumSet(modeOfInheritance); + } + + /** + * Analyses the compatibility of a list of {@link Gene} with the {@link ModeOfInheritance} used in the constructor + * of this class according to the observed pattern of inheritance in the {@link Pedigree}. This will only be applied + * to genes and the variants in the gene which have *PASSED* filtering. + */ + public void analyseInheritanceModes(Collection genes) { + genes.stream().filter(Gene::passedFilters).forEach(this::analyseInheritanceModes); + } + + /** + * Finds pairs of alleles compatible with autosomal recessive compound heterozygous inheritance according to the + * pedigree supplied in the class constructor. This will work independently of the mode of inheritance specified in + * the class constructor. + * + * @param passedVariantEvaluations + * @return a list of allele pairs compatible with an autosomal recessive compound heterozygous inheritance pattern. + */ + public List> findCompatibleCompHetAlleles(List passedVariantEvaluations) { + //Cant't be comp het if there's only one allele. + if (passedVariantEvaluations.size() <= 1) { + return Collections.emptyList(); + } + + List> compatibleAllelePairs = new ArrayList<>(); + //don't do all vs all otherwise we'll get the reciprocal pairs being tested so only check one side of the diagonal + for (int i = 0; i < passedVariantEvaluations.size(); i++) { + for (int j = i + 1; j < passedVariantEvaluations.size(); j++) { + VariantEvaluation ve1 = passedVariantEvaluations.get(i); + VariantEvaluation ve2 = passedVariantEvaluations.get(j); + if (!ve1.equals(ve2) && isCompHetCompatible(ve1, ve2)) { + compatibleAllelePairs.add(ImmutableList.of(ve1, ve2)); + } + } + } + return ImmutableList.copyOf(compatibleAllelePairs); + } + + private boolean isCompHetCompatible(VariantEvaluation ve1, VariantEvaluation ve2) { + List pair = Arrays.asList(ve1.getVariantContext(), ve2.getVariantContext()); + try { + ImmutableMap> compatibleSubModesMap = inheritanceAnnotator + .computeCompatibleInheritanceSubModes(pair); + if (compatibleSubModesMap.containsKey(SubModeOfInheritance.AUTOSOMAL_RECESSIVE_COMP_HET)) { + ImmutableList compHetPair = compatibleSubModesMap.get(SubModeOfInheritance.AUTOSOMAL_RECESSIVE_COMP_HET); + if (compHetPair.size() == 2) { + return true; + } + } + } catch (CannotAnnotateMendelianInheritance ex) { + logger.error(null, ex); + } + return false; + } + + /** + * Analyses the compatibility of a {@link Gene} with the {@link ModeOfInheritance} used in the constructor + * of this class according to the observed pattern of inheritance in the {@link Pedigree}. This will only be applied + * to the variants in the gene which have *PASSED* filtering. + */ + public boolean analyseInheritanceModes(Gene gene) { + if (gene.passedFilters()) { + checkInheritanceCompatibilityOfPassedVariants(gene); + } + return gene.isCompatibleWith(modeOfInheritance); + } + + private void checkInheritanceCompatibilityOfPassedVariants(Gene gene) { + if (modeOfInheritance == ModeOfInheritance.ANY) { + return; + } + //it is *CRITICAL* that only the PASSED variantEvaluations are taken into account here. + List passedVariantEvaluations = gene.getPassedVariantEvaluations(); + if (passedVariantEvaluations.size() > 1000) { + logger.info("Warning - this will take a while. Testing gene {} with {} passed variants for inheritance mode compatibility!", gene + .getGeneSymbol(), passedVariantEvaluations.size()); + } + + Multimap geneVariants = mapVariantEvaluationsToVariantContextString(passedVariantEvaluations); + List compatibleVariants = getCompatibleVariantContexts(passedVariantEvaluations); + + if (!compatibleVariants.isEmpty()) { + logger.debug("Gene {} has {} variants compatible with {}:", gene.getGeneSymbol(), compatibleVariants.size(), modeOfInheritance); + gene.setInheritanceModes(compatibleModes); + setVariantEvaluationInheritanceModes(geneVariants, compatibleVariants); + } + } + + private Multimap mapVariantEvaluationsToVariantContextString(List passedVariantEvaluations) { + Multimap geneVariants = ArrayListMultimap.create(); + for (VariantEvaluation variantEvaluation : passedVariantEvaluations) { + geneVariants.put(toKeyValue(variantEvaluation.getVariantContext()), variantEvaluation); + } + return geneVariants; + } + + /** + * A {@link VariantContext} cannot be used directly as a key in a Map or put into a Set as it does not override equals or hashCode. + * Also simply using toString isn't an option as the compatible variants returned from the {@link #inheritanceAnnotator} + * are different instances and have had their genotype strings changed. This method solves these problems. + */ + private String toKeyValue(VariantContext variantContext) { + return variantContext.toStringWithoutGenotypes(); + } + + private List getCompatibleVariantContexts(List passedVariantEvaluations) { + //This needs to be done using all the variants in the gene in order to be able to check for compound heterozygous variations + //otherwise it would be simpler to just call this on each variant in turn + try { + //Make sure only ONE variantContext is added if there are multiple alleles as there will be one VariantEvaluation per allele. + //Having multiple copies of a VariantContext might cause problems with the comp het calculations + List geneVariants = passedVariantEvaluations.stream() + .map(VariantEvaluation::getVariantContext) + .distinct() + .collect(toList()); + ImmutableMap> compatibleMap = inheritanceAnnotator.computeCompatibleInheritanceModes(geneVariants); + return compatibleMap.getOrDefault(modeOfInheritance, ImmutableList.of()); + } catch (CannotAnnotateMendelianInheritance ex) { + logger.error(null, ex); + } + return Collections.emptyList(); + } + + private void setVariantEvaluationInheritanceModes(Multimap geneVariants, List compatibleVariants) { + compatibleVariants.forEach(variantContext -> { + //using toStringWithoutGenotypes as the genotype string gets changed and VariantContext does not override equals or hashcode so this cannot be used as a key + Collection variants = geneVariants.get(toKeyValue(variantContext)); + variants.forEach(variant -> { + variant.setInheritanceModes(compatibleModes); + logger.debug("{}: {}", variant.getInheritanceModes(), variant); + }); + }); + } + + private Genotype getIndividualGenotype(Allele alternateAllele, List alleles) { + if (alleles.size() != 2) { + return Genotype.NOT_OBSERVED; + } + Allele allele0 = alleles.get(0); + Allele allele1 = alleles.get(1); + if (allele0.isNoCall() || allele1.isNoCall()) { + return Genotype.NOT_OBSERVED; + } + + final boolean isAlt0 = allele0.basesMatch(alternateAllele); + final boolean isAlt1 = allele1.basesMatch(alternateAllele); + if (isAlt0 && isAlt1) { + return Genotype.HOMOZYGOUS_ALT; + } else if (!isAlt0 && !isAlt1) { + return Genotype.HOMOZYGOUS_REF; + } else { + return Genotype.HETEROZYGOUS; + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/PedigreeFactory.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/PedigreeFactory.java new file mode 100644 index 000000000..eb80d0566 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/PedigreeFactory.java @@ -0,0 +1,212 @@ + +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis.util; + +import com.google.common.collect.ImmutableList; +import de.charite.compbio.jannovar.pedigree.*; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.IOException; +import java.nio.file.Path; +import java.util.List; +import java.util.Map; + +import static java.util.stream.Collectors.partitioningBy; +import static java.util.stream.Collectors.toList; + +/** + * Handles the creation of Pedigree objects. + * + * @author Jules Jacobsen + */ +public class PedigreeFactory { + + private static final Logger logger = LoggerFactory.getLogger(PedigreeFactory.class); + + public static final String DEFAULT_SAMPLE_NAME = "unnamed sample"; + + /** + * The Exomiser can perform filtering of VCF data according to pedigree + * data. If the VCF file contains multiple samples, then the Exomiser + * requires a corresponding PED file to be able to analyze the inheritance + * pattern of the variants. The PED file is parsed by the PEDFileParser + * class in jannovar. This results in a Pedigree object that is used to do + * the pedigree analysis. The VCF Parser from Jannovar creates Genotype + * objects for each variant in the VCF file, and these can be compared to + * the pedigree information. The {@link Gene Gene} class + * coordinates this analysis. + *

+ * Note that for single-sample VCF files, a Pedigree object is still + * constructed, and we assume that the sample is from an affected person. + * + * @param pedigreeFilePath + * @param sampleNames + * @return + */ + public Pedigree createPedigreeForSampleData(Path pedigreeFilePath, List sampleNames) { + int numberOfSamples = sampleNames.size(); + switch (numberOfSamples) { + case 0: + if (pedigreeFilePath != null) { + throw new PedigreeCreationException("No data present in sampleData"); + } + case 1: + return createSingleSamplePedigree(sampleNames); + default: + return createMultiSamplePedigree(pedigreeFilePath, sampleNames); + } + } + + //TODO: this might be overly convoluted- Jannovar does this: +// final PedFileReader pedReader = new PedFileReader(new File(options.pathPedFile)); +// final PedFileContents pedContents = pedReader.read(); +// final Pedigree pedigree = new Pedigree(pedContents, pedContents.getIndividuals().get(0).getPedigree()); +// if (!pedigree.getNames().containsAll(vcfHeader.getGenotypeSamples())) { +// throw new IncompatiblePedigreeException("The VCF file is not compatible with the pedigree!"); +// } + + + private Pedigree createSingleSamplePedigree(List sampleNames) { + String sampleName = getSingleSampleName(sampleNames); + logger.info("Creating single-sample pedigree for {}", sampleName); + final Person person = new Person(sampleName, null, null, Sex.UNKNOWN, Disease.AFFECTED); + return new Pedigree("family", ImmutableList.of(person)); + } + + private String getSingleSampleName(List sampleNames) { + if (sampleNames.isEmpty()) { + logger.info("No sample names present. Using default '{}'", DEFAULT_SAMPLE_NAME); + return DEFAULT_SAMPLE_NAME; + } + return sampleNames.get(0); + } + + private Pedigree createMultiSamplePedigree(Path pedigreeFilePath, List sampleNames) { + logger.info("Creating multi-sample pedigree for VCF containing {} samples", sampleNames.size()); + logger.info("Reading pedigree file: {}", pedigreeFilePath); + final PedFileContents pedFileContents = checkAndBuildPedFileContents(pedigreeFilePath); + final Pedigree pedigree = checkNamesAndBuildPedigree(sampleNames, pedFileContents); + logger.info("Created pedigree for family {} comprising {} members {}", pedigree.getName(), pedigree.getMembers().size(), pedigree.getNames()); + return pedigree; + } + + private PedFileContents checkAndBuildPedFileContents(Path pedigreeFilePath) { + final PedFileContents pedFileContents = readPedFileContents(pedigreeFilePath); + checkPedFileContentsContainsSingleFamily(pedFileContents); + return pedFileContents; + } + + private PedFileContents readPedFileContents(Path pedigreeFilePath) { + checkPedigreePathIsNotNull(pedigreeFilePath); + try { + PedFileContents pedFileContents = new PedFileReader(pedigreeFilePath.toFile()).read(); + if (pedFileContents.getIndividuals().isEmpty()) { + //might never happen, but anyway... + throw new PedigreeCreationException("PED file contains no valid individuals - Check PED file format."); + } + return pedFileContents; + + } catch (PedParseException e) { + throw new PedigreeCreationException("Problem parsing the PED file - Check PED file format, fields should be TAB separated.", e); + } catch (IOException e) { + throw new PedigreeCreationException("Problem reading the PED file", e); + } + } + + private void checkPedigreePathIsNotNull(Path pedigreeFilePath) throws PedigreeCreationException { + if (pedigreeFilePath == null) { + logger.error("PED file must be be provided for multi-sample VCF files."); + //terminate the program - we really need one of these. + throw new PedigreeCreationException("Pedigree file path cannot be null.", new NullPointerException()); + } + } + + private void checkPedFileContentsContainsSingleFamily(PedFileContents pedFileContents) throws PedigreeCreationException { + List familyNames = pedFileContents.getIndividuals().stream().map(PedPerson::getPedigree).distinct().collect(toList()); + if (familyNames.size() > 1) { + throw new PedigreeCreationException("PED file must contain only one family, found " + familyNames.size() + ": " + familyNames + ". Please provide PED file containing only the proband family matching supplied HPO terms."); + } + } + + private Pedigree checkNamesAndBuildPedigree(List sampleNames, PedFileContents pedFileContents) { + //This step is important - we want a catastrophic failure here is the PED and VCF file sample names don't match in case the inheritance mode analysis goes wrong later. + //If we can be assured that this isn't a problem fro Jannovar to check this method can be removed. + checkPedFileContentsMatchesSampleNames(pedFileContents, sampleNames); + + return buildPedigree(pedFileContents); + } + + + private void checkPedFileContentsMatchesSampleNames(PedFileContents pedFileContents, List sampleNames) throws PedigreeCreationException { + logger.debug("Sample names from VCF: {}", sampleNames); + logger.debug("Individuals from PED: {}", pedFileContents.getNameToPerson().keySet()); + logger.debug("Matching VCF sample names with PED individuals..."); + //A pedigree could contain unsequenced individuals (dead/unwilling/unable to be part of study) we just need to be sure the sample names from the vcf are all present in the ped file. + List unrepresentedSamples = sampleNamesNotRepresentedInPedigree(pedFileContents, sampleNames); + + if (!unrepresentedSamples.isEmpty()) { + unrepresentedSamples.forEach(name -> logger.error("Individual {} present in VCF but not in PED file. Please ensure names in VCF are present in PED.", name)); + throw new PedigreeCreationException("VCF - PED mismatch. There are mismatched individuals in the PED and/or VCF file. Please ensure all VCF samples are represented in the PED file."); + } + } + + private List sampleNamesNotRepresentedInPedigree(PedFileContents pedFileContents, List sampleNames) { + Map pedPeople = pedFileContents.getNameToPerson(); + Map> samples = sampleNames.stream().collect(partitioningBy(pedPeople::containsKey)); + + List representedSamples = samples.get(true); + if (representedSamples.isEmpty()) { + throw new PedigreeCreationException("VCF - PED mismatch. None of the sample names in the VCF match any of the individuals in the PED"); + } + + return samples.get(false); + } + + private Pedigree buildPedigree(PedFileContents pedFileContents) { + final String name = pedFileContents.getIndividuals().get(0).getPedigree(); + try { + logger.debug("Building pedigree for family {}", name); + return new Pedigree(name, new PedigreeExtractor(name, pedFileContents).run()); + } catch (PedParseException e) { + throw new PedigreeCreationException("Problem parsing the PED file.", e); + } + } + + public class PedigreeCreationException extends RuntimeException { + + private static final long serialVersionUID = 1L; + + public PedigreeCreationException() { + super("Error creating Pedigree"); + } + + public PedigreeCreationException(String message) { + super(message); + } + + public PedigreeCreationException(String message, Exception e) { + super(message, e); + } + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/RawScoreGeneScorer.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/RawScoreGeneScorer.java new file mode 100644 index 000000000..7032ff006 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/RawScoreGeneScorer.java @@ -0,0 +1,300 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis.util; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import de.charite.compbio.jannovar.pedigree.Pedigree; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.math.BigDecimal; +import java.util.*; +import java.util.function.Consumer; +import java.util.function.Predicate; + +/** + * Class for scoring Genes according to their phenotype similarity to the proband, the filtered variants and the + * inheritance mode under which these would have an effect. + * + * @author Jules Jacobsen + */ +public class RawScoreGeneScorer implements GeneScorer { + + private static final Logger logger = LoggerFactory.getLogger(RawScoreGeneScorer.class); + + private final int probandSampleId; + private final ModeOfInheritance modeOfInheritance; + + private final InheritanceModeAnalyser inheritanceModeAnalyser; + + /** + * @param probandSampleId Sample id of the proband - this is the zero-based numerical position of the proband sample in the VCF. + * @param modeOfInheritance Inheritance mode which the genes should be scored for. + * @param pedigree Pedigree containing the proband - either a single sample pedigree or the proband and their family. + */ + public RawScoreGeneScorer(int probandSampleId, ModeOfInheritance modeOfInheritance, Pedigree pedigree) { + this.probandSampleId = probandSampleId; + this.modeOfInheritance = modeOfInheritance; + this.inheritanceModeAnalyser = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + } + + /** + * Calculates the final ranks of all genes that have survived the filtering + * and prioritising steps. The strategy is that for autosomal dominant + * diseases, we take the single most pathogenic score of any variant + * affecting the gene; for autosomal recessive diseases, we take the mean of + * the two most pathogenic variants. X-linked diseases are filtered such + * that only X-chromosomal genes are left over, and the single worst variant + * is taken. + */ + @Override + public Consumer scoreGene() { + return gene -> { + //It is critical only the PASS variants are used in the scoring + float variantScore = calculateVariantScore(gene.getPassedVariantEvaluations()); + gene.setVariantScore(variantScore); + + float priorityScore = calculateGenePriorityScore(gene); + gene.setPriorityScore(priorityScore); + + float combinedScore = calculateCombinedScore(variantScore, priorityScore, gene.getPriorityResults().keySet()); + gene.setCombinedScore(combinedScore); + }; + } + + + /** + * Calculates the total priority score for the {@code VariantEvaluation} of + * the gene. Note that for assumed + * autosomal recessive variants, the mean of the worst two variants is + * taken, and for other modes of inheritance,the since worst value is taken. + *

+ * Note that we assume that genes have been filtered for mode of + * inheritance before this function is called. This means that we do not + * need to apply separate filtering for mode of inheritance here. The + * only thing we need to watch out for is whether a variant is homozygous or + * not (for autosomal recessive inheritance, these variants get counted + * twice). + * + * @param variantEvaluations from a gene + * @return + */ + private float calculateVariantScore(List variantEvaluations) { + if (variantEvaluations.isEmpty()) { + return 0f; + } + if (modeOfInheritance == ModeOfInheritance.AUTOSOMAL_RECESSIVE) { + return calculateAutosomalRecessiveFilterScore(variantEvaluations); + } + return calculateNonAutosomalRecessiveFilterScore(variantEvaluations); + } + + private float calculateGenePriorityScore(Gene gene) { + //TODO #194 - this is broken as the Gene priority results are almost never empty as OMIM is typically always run. + // If a gene has only got an OMIM prioritiser result and the result of this is the default 1.0 the gene will score top. If run in conjunction with a second prioritiser + // and when a gene id/symbol in a model doesn't match that of the gene itself - e.g. {USF3, 205717} {KIAA2018, 205717} where the HGNC changed the symbol, the gene with + // *only* the OMIM result will have a score of 1.0 and hence be ranked above the top real result. + // Possible solutions - don't return 1.0 score from OMIM, only take into account OOMIM if the score is not 1.0, apply OMIM scoring at a different stage, + //OMIM prioritiser shouldn't be a prioritiser - the scoring is actually via the inheritance mode of the known diseases associated with that gene. + if (gene.getPriorityResults().isEmpty()) { + return 0f; + } + return calculatePriorityScore(gene.getPriorityResults().values()); + } + + /** + * Calculate the combined priority score for the gene. + * + * @param priorityScores of the gene + * @return + */ + private float calculatePriorityScore(Collection priorityScores) { + float finalPriorityScore = 1f; + for (PriorityResult priorityScore : priorityScores) { + finalPriorityScore *= priorityScore.getScore(); + } + return finalPriorityScore; + } + + + /** + * Calculate the combined score of this gene based on the relevance of the + * gene (priorityScore) and the predicted effects of the variants + * (filterScore). + *

+ * Note that this method assumes we have already calculated the filter and variant scores. + * + */ + private float calculateCombinedScore(float filterScore, float priorityScore, Set prioritiesRun) { + + //TODO: what if we ran all of these? It *is* *possible* to do so. + if (prioritiesRun.contains(PriorityType.HIPHIVE_PRIORITY)) { + double logitScore = 1 / (1 + Math.exp(-(-13.28813 + 10.39451 * priorityScore + 9.18381 * filterScore))); + return (float) logitScore; + } else if (prioritiesRun.contains(PriorityType.EXOMEWALKER_PRIORITY)) { + //NB this is based on raw walker score + double logitScore = 1 / (1 + Math.exp(-(-8.67972 + 219.40082 * priorityScore + 8.54374 * filterScore))); + return (float) logitScore; + } else if (prioritiesRun.contains(PriorityType.PHENIX_PRIORITY)) { + double logitScore = 1 / (1 + Math.exp(-(-11.15659 + 13.21835 * priorityScore + 4.08667 * filterScore))); + return (float) logitScore; + } else { + return (priorityScore + filterScore) / 2f; + } + } + + /** + * For assumed autosomal recessive variants, this method calculates the mean + * of the worst(highest numerical) two variants. Requires the sampleId so that the correct inheritance pattern is + * calculated for the proband alleles. + */ + private float calculateAutosomalRecessiveFilterScore(List variantEvaluations) { + + if (variantEvaluations.isEmpty()) { + return 0f; + } + + Optional bestCompHetPair = inheritanceModeAnalyser.findCompatibleCompHetAlleles(variantEvaluations) + .stream() + .map(pair -> new CompHetPair(pair.get(0), pair.get(1))) + .max(Comparator.comparing(CompHetPair::getScore)); + + Optional bestHomozygousAlt = variantEvaluations.stream() + .filter(variantIsHomozygousAlt(probandSampleId)) + .max(Comparator.comparing(VariantEvaluation::getVariantScore)); + + // Realised original logic allows a comphet to be calculated between a top scoring het and second place hom which is wrong + // Jannovar seems to currently be allowing hom_ref variants through so skip these as well + double bestCompHetScore = bestCompHetPair + .map(CompHetPair::getScore) + .orElse(0.0); + + double bestHomAltScore = bestHomozygousAlt + .map(VariantEvaluation::getVariantScore) + .orElse(0f); + + double bestScore = Double.max(bestHomAltScore, bestCompHetScore); + + if (BigDecimal.valueOf(bestScore).equals(BigDecimal.valueOf(bestCompHetScore))) { + bestCompHetPair.ifPresent(CompHetPair::setAsContributingToGeneScore); + } else { + bestHomozygousAlt.ifPresent(VariantEvaluation::setAsContributingToGeneScore); + } + + return (float) bestScore; + } + + private Predicate variantIsHomozygousAlt(int sampleId) { + return ve -> ve.getVariantContext().getGenotype(sampleId).isHomVar(); + } + + private Predicate variantIsHeterozygous(int sampleId) { + return ve -> ve.getVariantContext().getGenotype(sampleId).isHet(); + } + + /** + * For other variants with non-autosomal recessive modes of inheritance, the + * most deleterious variant (highest numerical variantScore value) is taken. + * + * @param variantEvaluations + * @return + */ + private float calculateNonAutosomalRecessiveFilterScore(List variantEvaluations) { + //Otherwise for non-autosomal recessive, there is just one heterozygous mutation + //thus return only the single highest score. + Optional bestVariant = variantEvaluations + .stream() + .max(Comparator.comparing(VariantEvaluation::getVariantScore)); + + bestVariant.ifPresent(VariantEvaluation::setAsContributingToGeneScore); + + return bestVariant.map(VariantEvaluation::getVariantScore).orElse(0f); + } + + /** + * Data class for holding pairs of alleles which are compatible with AR compound heterozygous inheritance. + */ + private final class CompHetPair { + + private final double score; + private final VariantEvaluation allele1; + private final VariantEvaluation allele2; + + CompHetPair(VariantEvaluation allele1, VariantEvaluation allele2) { + this.allele1 = allele1; + this.allele2 = allele2; + this.score = calculateScore(allele1, allele2); + } + + double calculateScore(VariantEvaluation allele1, VariantEvaluation allele2) { + double allele1Score = allele1 == null ? 0 : allele1.getVariantScore(); + double allele2Score = allele2 == null ? 0 : allele2.getVariantScore(); + return (allele1Score + allele2Score) / 2.0; + } + + double getScore() { + return score; + } + + void setAsContributingToGeneScore() { + if (allele1 != null) { + allele1.setAsContributingToGeneScore(); + } + if (allele2 != null) { + allele2.setAsContributingToGeneScore(); + } + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + CompHetPair that = (CompHetPair) o; + return Double.compare(that.score, score) == 0 && + Objects.equals(allele1, that.allele1) && + Objects.equals(allele2, that.allele2); + } + + @Override + public int hashCode() { + return Objects.hash(allele1, allele2, score); + } + + @Override + public String toString() { + return "CompHetPair{" + + "score=" + score + + ", allele1=" + allele1 + + ", allele2=" + allele2 + + '}'; + } + + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/SampleNameChecker.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/SampleNameChecker.java new file mode 100644 index 000000000..f4ad937aa --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/analysis/util/SampleNameChecker.java @@ -0,0 +1,67 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis.util; + +import org.monarchinitiative.exomiser.core.analysis.SampleMismatchException; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.List; + +/** + * @author Jules Jacobsen + */ +public class SampleNameChecker { + + private static final Logger logger = LoggerFactory.getLogger(SampleNameChecker.class); + + private SampleNameChecker() { + //deliberately empty - class should not be instantiated + } + + public static String getProbandSampleName(String probandSampleName, List sampleNames) { + if (probandSampleName.isEmpty() && sampleNames.size() > 1) { + String message = String.format("proband sample name not specified. Expected single sample VCF but got %d sample names - %s. Please check your sample and analysis files match.", sampleNames.size(), sampleNames); + throw new SampleMismatchException(message); + } + if (probandSampleName.isEmpty() && sampleNames.size() == 1) { + String vcfSampleName = sampleNames.get(0); + logger.info("proband sample name not specified - using sample name '{}' from VCF", vcfSampleName); + return vcfSampleName; + } + return probandSampleName; + } + + public static int getProbandSampleId(String probandSampleName, List sampleNames) { + if (probandSampleName.isEmpty() && sampleNames.size() <= 1) { + return 0; + } + return getMultiSampleProbandSampleId(probandSampleName, sampleNames); + } + + private static int getMultiSampleProbandSampleId(String probandSampleName, List sampleNames) { + if (!sampleNames.contains(probandSampleName)) { + String message = String.format("proband sample name '%s' is not found in the VCF sample. Expected one of %s. Please check your sample and analysis files match.", probandSampleName, sampleNames); + throw new SampleMismatchException(message); + } + return sampleNames.indexOf(probandSampleName); + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterDataProvider.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterDataProvider.java new file mode 100644 index 000000000..2301f0123 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterDataProvider.java @@ -0,0 +1,93 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +/** + * Provides the base functionality for VariantFilterDataProviders. + * + * @author Jules Jacobsen + */ +public abstract class AbstractFilterDataProvider implements VariantFilterDataProvider { + + protected final VariantDataService variantDataService; + protected final VariantFilter variantFilter; + + /** + * Provides the base functionality for all VariantFilterDataProviders. + * + * @param variantDataService + * @param variantFilter + */ + AbstractFilterDataProvider(VariantDataService variantDataService, VariantFilter variantFilter) { + this.variantDataService = variantDataService; + this.variantFilter = variantFilter; + } + + /** + * Classes extending this class must provide the variantEvaluation with the + * implementation-specific data. + * + * @param variantEvaluation + */ + @Override + public abstract void provideVariantData(VariantEvaluation variantEvaluation); + + @Override + public VariantFilter getDecoratedFilter() { + return variantFilter; + } + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + provideVariantData(variantEvaluation); + return variantFilter.runFilter(variantEvaluation); + } + + @Override + public FilterType getFilterType() { + return variantFilter.getFilterType(); + } + + //TODO: is this a good idea to make this class 'invisible' like this? + @Override + public boolean equals(Object o) { + return variantFilter.equals(o); + } + + @Override + public int hashCode() { + return variantFilter.hashCode(); + } + + @Override + public String toString() { + return variantFilter.toString(); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterResult.java new file mode 100644 index 000000000..6d8d04cd6 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterResult.java @@ -0,0 +1,93 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import java.util.Locale; +import java.util.Objects; + +/** + * + * @author Jules Jacobsen + */ +abstract class AbstractFilterResult implements FilterResult { + + private final FilterType filterType; + private final Status status; + + AbstractFilterResult(FilterType filterType, Status status) { + this.filterType = filterType; + this.status = status; + } + + @Override + public FilterType getFilterType() { + return filterType; + } + + @Override + public boolean passed() { + return status == Status.PASS; + } + + @Override + public boolean failed() { + return status == Status.FAIL; + } + + @Override + public boolean wasRun() { + return status != Status.NOT_RUN; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 59 * hash + Objects.hashCode(this.filterType); + hash = 59 * hash + Objects.hashCode(this.status); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final AbstractFilterResult other = (AbstractFilterResult) obj; + if (this.filterType != other.filterType) { + return false; + } + return this.status == other.status; + } + + @Override + public String toString() { + return String.format(Locale.UK, "Filter=%s status=%s",filterType, status); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/EntrezGeneIdFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/EntrezGeneIdFilter.java new file mode 100644 index 000000000..9d00bfa4f --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/EntrezGeneIdFilter.java @@ -0,0 +1,97 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Objects; +import java.util.Set; + +/** + * VariantFilter to remove any variants belonging to genes not on a user-entered + * list of genes. + * + * Note: this could be done as a GeneFilter but will be most efficient to run as + * the first variantFilter + * + * @author Damian Smedley + * @author Jules Jacobsen + */ +public class EntrezGeneIdFilter implements VariantFilter { + + private static final Logger logger = LoggerFactory.getLogger(EntrezGeneIdFilter.class); + + private static final FilterType filterType = FilterType.ENTREZ_GENE_ID_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + + private final Set genesToKeep; + + public EntrezGeneIdFilter(Set genesToKeep) { + this.genesToKeep = genesToKeep; + } + + public Set getGeneIds() { + return genesToKeep; + } + + @Override + public FilterType getFilterType() { + return filterType; + } + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + if (genesToKeep.contains(variantEvaluation.getEntrezGeneId())) { + return PASS; + } + return FAIL; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 97 * hash + Objects.hashCode(EntrezGeneIdFilter.filterType); + hash = 97 * hash + Objects.hashCode(this.genesToKeep); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final EntrezGeneIdFilter other = (EntrezGeneIdFilter) obj; + return Objects.equals(this.genesToKeep, other.genesToKeep); + } + + @Override + public String toString() { + return "EntrezGeneIdFilter{" + "genesToKeep=" + genesToKeep + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FailFilterResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FailFilterResult.java new file mode 100644 index 000000000..351d80bb1 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FailFilterResult.java @@ -0,0 +1,38 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +/** + * + * @author Jules Jacobsen + */ +final class FailFilterResult extends AbstractFilterResult { + + FailFilterResult(FilterType filterType) { + super(filterType, Status.FAIL); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FailedVariantFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FailedVariantFilter.java new file mode 100644 index 000000000..21bcc03dc --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FailedVariantFilter.java @@ -0,0 +1,84 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import htsjdk.variant.variantcontext.VariantContext; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +/** + * Fails variants which do not have 'PASS' or '.' in the VCF FILTER field. + * + * @author Jules Jacobsen + */ +public class FailedVariantFilter implements VariantFilter { + + private static final FilterType FILTER_TYPE = FilterType.FAILED_VARIANT_FILTER; + + private static final FilterResult PASS = FilterResult.pass(FILTER_TYPE); + private static final FilterResult FAIL = FilterResult.fail(FILTER_TYPE); + + private enum VariantContextFilterState { + UNFILTERED, PASSED, FAILED + } + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + VariantContextFilterState vcfFilterState = determineVariantContextState(variantEvaluation.getVariantContext()); + if (vcfFilterState == VariantContextFilterState.PASSED || vcfFilterState == VariantContextFilterState.UNFILTERED) { + return PASS; + } + return FAIL; + } + + private VariantContextFilterState determineVariantContextState(VariantContext variantContext) { + if (variantContext.filtersWereApplied()) { + if (variantContext.isNotFiltered()) { + return VariantContextFilterState.PASSED; + } else { + return VariantContextFilterState.FAILED; + } + } + return VariantContextFilterState.UNFILTERED; + } + + @Override + public FilterType getFilterType() { + return FILTER_TYPE; + } + + @Override + public int hashCode() { + return super.hashCode(); + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + return getClass() == obj.getClass(); + } + + @Override + public String toString() { + return "FailedVariantFilter{}"; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/Filter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/Filter.java new file mode 100644 index 000000000..ae43444cd --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/Filter.java @@ -0,0 +1,54 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import org.monarchinitiative.exomiser.core.analysis.AnalysisStep; +import org.monarchinitiative.exomiser.core.model.Filterable; + +/** + * + * @author Jules Jacobsen + * @param + */ +public interface Filter extends AnalysisStep { + + /** + * @return an integer constant (as defined in exomizer.common.Constants) + * that will act as a flag to generate the output HTML dynamically depending + * on the filters that the user has chosen. + */ + @JsonIgnore + FilterType getFilterType(); + + /** + * True or false depending on whether the {@code VariantEvaluation} passes the runFilter or not. + * + * @param filterable + * @return true if the {@code VariantEvaluation} passes the runFilter. + */ + FilterResult runFilter(T filterable); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterReport.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterReport.java new file mode 100644 index 000000000..19c455b50 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterReport.java @@ -0,0 +1,117 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import java.util.ArrayList; +import java.util.List; +import java.util.Objects; + +/** + * Handles the storage of reports from a filter. The report contains a list of + * messages from the filter about what happened during the filtering of a + * particular list of {@code VariantEvaluation}. + * + * @author Jules Jacobsen + */ +public class FilterReport { + + private final FilterType filterType; + + private final List messages; + + private final int passed; + + private final int failed; + + public FilterReport(FilterType filterType, int pass, int fail) { + this.filterType = filterType; + passed = pass; + failed = fail; + messages = new ArrayList<>(); + } + + public FilterType getFilterType() { + return filterType; + } + + public boolean addMessage(String message) { + return messages.add(message); + } + + public List getMessages() { + return messages; + } + + public boolean hasMessages() { + return !messages.isEmpty(); + } + + public int getPassed() { + return passed; + } + + public int getFailed() { + return failed; + } + + @Override + public int hashCode() { + int hash = 5; + hash = 97 * hash + Objects.hashCode(this.filterType); + hash = 97 * hash + Objects.hashCode(this.messages); + hash = 97 * hash + this.passed; + hash = 97 * hash + this.failed; + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final FilterReport other = (FilterReport) obj; + if (this.filterType != other.filterType) { + return false; + } + if (!Objects.equals(this.messages, other.messages)) { + return false; + } + if (this.passed != other.passed) { + return false; + } + return this.failed == other.failed; + } + + + @Override + public String toString() { + return String.format("FilterReport for %s: pass:%d fail:%d %s", filterType, passed, failed, messages); + } + +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterReportFactory.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterReportFactory.java similarity index 76% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterReportFactory.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterReportFactory.java index e5dd93e30..63bf4baed 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterReportFactory.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterReportFactory.java @@ -1,23 +1,43 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.AnalysisStep; -import de.charite.compbio.exomiser.core.model.Filterable; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.ArrayList; -import java.util.List; -import java.util.Locale; +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.model.Filterable; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; import org.slf4j.Logger; import org.slf4j.LoggerFactory; +import java.util.List; +import java.util.Locale; +import java.util.stream.Collectors; + /** * Factory class for producing {@code FilterReport} lists from the list of * filtered {@code VariantEvaluation}. @@ -38,63 +58,48 @@ public FilterReportFactory() { * @param analysis * @return a List of {@code FilterReport} */ - public List makeFilterReports(Analysis analysis) { - - SampleData sampleData = analysis.getSampleData(); - List filterReports = new ArrayList<>(); + public List makeFilterReports(Analysis analysis, AnalysisResults analysisResults) { List filters = getFiltersFromAnalysis(analysis); - for (Filter filter : filters) { - filterReports.add(makeFilterReport(filter, sampleData)); - } - - return filterReports; + return filters.stream().map(filter -> makeFilterReport(filter, analysisResults)).collect(Collectors.toList()); } private List getFiltersFromAnalysis(Analysis analysis) { - List filters = new ArrayList<>(); - - for (AnalysisStep step : analysis.getAnalysisSteps()) { - if (Filter.class.isInstance(step)) { - filters.add((Filter) step); - } - } - - return filters; + return analysis.getAnalysisSteps().stream().filter(Filter.class::isInstance).map(step -> (Filter) step).collect(Collectors.toList()); } /** - * Returns a FilterReport for the SampleData and the specified FilterType. + * Returns a FilterReport for the AnalysisResults and the specified FilterType. * If the FilterType is not recognised or supported then this method will * return a default report with no messages. * * @param filter - * @param sampleData + * @param analysisResults * @return */ - protected FilterReport makeFilterReport(Filter filter, SampleData sampleData) { + protected FilterReport makeFilterReport(Filter filter, AnalysisResults analysisResults) { FilterType filterType = filter.getFilterType(); Filter baseFilter = unWrapVariantFilterDataProvider(filter); switch (filterType) { case VARIANT_EFFECT_FILTER: - return makeTargetFilterReport((VariantEffectFilter) baseFilter, sampleData.getVariantEvaluations()); + return makeTargetFilterReport((VariantEffectFilter) baseFilter, analysisResults.getVariantEvaluations()); case KNOWN_VARIANT_FILTER: - return makeKnownVariantFilterReport((KnownVariantFilter) baseFilter, sampleData.getVariantEvaluations()); + return makeKnownVariantFilterReport((KnownVariantFilter) baseFilter, analysisResults.getVariantEvaluations()); case FREQUENCY_FILTER: - return makeFrequencyFilterReport((FrequencyFilter) baseFilter, sampleData.getVariantEvaluations()); + return makeFrequencyFilterReport((FrequencyFilter) baseFilter, analysisResults.getVariantEvaluations()); case QUALITY_FILTER: - return makeQualityFilterReport((QualityFilter) baseFilter, sampleData.getVariantEvaluations()); + return makeQualityFilterReport((QualityFilter) baseFilter, analysisResults.getVariantEvaluations()); case PATHOGENICITY_FILTER: - return makePathogenicityFilterReport((PathogenicityFilter) baseFilter, sampleData.getVariantEvaluations()); + return makePathogenicityFilterReport((PathogenicityFilter) baseFilter, analysisResults.getVariantEvaluations()); case INTERVAL_FILTER: - return makeIntervalFilterReport((IntervalFilter) baseFilter, sampleData.getVariantEvaluations()); + return makeIntervalFilterReport((IntervalFilter) baseFilter, analysisResults.getVariantEvaluations()); case INHERITANCE_FILTER: - return makeInheritanceFilterReport((InheritanceFilter) baseFilter, sampleData.getGenes()); + return makeInheritanceFilterReport((InheritanceFilter) baseFilter, analysisResults.getGenes()); case PRIORITY_SCORE_FILTER: - return makePriorityScoreFilterReport((PriorityScoreFilter) baseFilter, sampleData.getGenes()); + return makePriorityScoreFilterReport((PriorityScoreFilter) baseFilter, analysisResults.getGenes()); default: - return makeDefaultVariantFilterReport(filterType, sampleData.getVariantEvaluations()); + return makeDefaultVariantFilterReport(filterType, analysisResults.getVariantEvaluations()); } } @@ -143,14 +148,18 @@ private FilterReport makeKnownVariantFilterReport(KnownVariantFilter filter, Lis int total = report.getPassed() + report.getFailed(); - report.addMessage(String.format("Removed %d variants with no RSID or frequency data (%.1f%%)", numNotInDatabase, 100f * (double) numNotInDatabase / total)); - report.addMessage(String.format("dbSNP \"rs\" id available for %d variants (%.1f%%)", numDbSnpRsId, 100 * (double) numDbSnpRsId / total)); - report.addMessage(String.format("Data available in dbSNP (for 1000 Genomes Phase I) for %d variants (%.1f%%)", numDbSnpFreqData, 100f * (double) numDbSnpFreqData / total)); - report.addMessage(String.format("Data available in Exome Server Project for %d variants (%.1f%%)", numEspFreqData, 100f * (double) numEspFreqData / total)); - report.addMessage(String.format("Data available from ExAC Project for %d variants (%.1f%%)", numExaCFreqData, 100f * (double) numExaCFreqData / total)); + report.addMessage(String.format("Removed %d variants with no RSID or frequency data (%.1f%%)", numNotInDatabase, asPercent(numNotInDatabase, total))); + report.addMessage(String.format("dbSNP \"rs\" id available for %d variants (%.1f%%)", numDbSnpRsId, asPercent(numDbSnpRsId, total))); + report.addMessage(String.format("Data available in dbSNP (for 1000 Genomes Phase I) for %d variants (%.1f%%)", numDbSnpFreqData, asPercent(numDbSnpFreqData, total))); + report.addMessage(String.format("Data available in Exome Server Project for %d variants (%.1f%%)", numEspFreqData, asPercent(numEspFreqData, total))); + report.addMessage(String.format("Data available from ExAC Project for %d variants (%.1f%%)", numExaCFreqData, asPercent(numExaCFreqData, total))); return report; } + private double asPercent(double number, int total) { + return 100f * number / total; + } + private FilterReport makeFrequencyFilterReport(FrequencyFilter filter, List variantEvaluations) { FilterReport report = makeDefaultVariantFilterReport(FilterType.FREQUENCY_FILTER, variantEvaluations); diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterResult.java new file mode 100644 index 000000000..64d6c2493 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterResult.java @@ -0,0 +1,54 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +/** + * A FilterResult object gets attached to each Variant object as a result of the + * filtering of the variants in the VCF file according to various criteria. + * + * @author Jules Jacobsen + */ +public interface FilterResult { + + enum Status { + PASS, FAIL, NOT_RUN + } + + static FilterResult pass(FilterType filterType) { + return new PassFilterResult(filterType); + } + + static FilterResult fail(FilterType filterType) { + return new FailFilterResult(filterType); + } + + static FilterResult notRun(FilterType filterType) { + return new NotRunFilterResult(filterType); + } + + FilterType getFilterType(); + + boolean passed(); + + boolean failed(); + + boolean wasRun(); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterRunner.java new file mode 100644 index 000000000..e30c41a6f --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterRunner.java @@ -0,0 +1,56 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.Filterable; + +import java.util.List; + +/** + * Generic interface for classes which handle running + * {@code org.monarchinitiative.exomiser.core.model.Filter} over + * {@code org.monarchinitiative.exomiser.core.model.Filterable} objects. + * + * @author Jules Jacobsen + * @param + * @param + */ +public interface FilterRunner { + + /** + * Runs the {@code org.monarchinitiative.exomiser.core.model.Filterable} + * objects through the specified List of + * {@code org.monarchinitiative.exomiser.core.model.Filter} + * + * @param filters + * @param filterables + * @return + */ + List run(List filters, List filterables); + + List run(T filter, List filterables); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterSettings.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterSettings.java new file mode 100644 index 000000000..1ca01a208 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterSettings.java @@ -0,0 +1,62 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.monarchinitiative.exomiser.core.filters.FilterSettingsImpl.FilterSettingsBuilder; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; + +import java.util.Set; + +/** + * Settings parameters required by the filters. + * + * @author Jules Jacobsen + */ +public interface FilterSettings { + + static FilterSettingsBuilder builder() { + return FilterSettingsImpl.builder(); + } + + float getMaximumFrequency(); + + float getMinimumQuality(); + + GeneticInterval getGeneticInterval(); + + boolean keepOffTargetVariants(); + + boolean removeFailedVariants(); + + boolean removeKnownVariants(); + + boolean keepNonPathogenicVariants(); + + ModeOfInheritance getModeOfInheritance(); + + Set getGenesToKeep(); +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterSettingsImpl.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterSettingsImpl.java similarity index 75% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterSettingsImpl.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterSettingsImpl.java index 7722e509e..961de608d 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/filters/FilterSettingsImpl.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterSettingsImpl.java @@ -1,13 +1,34 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.filters; +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.LinkedHashSet; +import java.util.Collections; import java.util.Objects; import java.util.Set; @@ -15,13 +36,14 @@ * * @author Jules Jacobsen */ -public class FilterSettingsImpl implements FilterSettings { +class FilterSettingsImpl implements FilterSettings { //FILTER variables private final float maximumFrequency; private final float minimumQuality; private final GeneticInterval geneticInterval; private final boolean keepNonPathogenicVariants; + private final boolean removeFailedVariants; private final boolean removeKnownVariants; private final boolean keepOffTargetVariants; private final Set genesToKeep; @@ -32,23 +54,31 @@ private FilterSettingsImpl(FilterSettingsBuilder builder) { minimumQuality = builder.minimumQuality; geneticInterval = builder.geneticInterval; keepNonPathogenicVariants = builder.keepNonPathogenicVariants; + removeFailedVariants = builder.removeFailedVariants; removeKnownVariants = builder.removeKnownVariants; keepOffTargetVariants = builder.keepOffTargetVariants; genesToKeep = builder.geneIdsToKeep; modeOfInheritance = builder.modeOfInheritance; } + public static FilterSettingsBuilder builder() { + return new FilterSettingsBuilder(); + } + public static class FilterSettingsBuilder { private float maximumFrequency = 100.00f; private float minimumQuality = 0; private GeneticInterval geneticInterval = null; private boolean keepNonPathogenicVariants = false; + private boolean removeFailedVariants = false; private boolean removeKnownVariants = false; private boolean keepOffTargetVariants = false; - private Set geneIdsToKeep = new LinkedHashSet(); - private ModeOfInheritance modeOfInheritance = ModeOfInheritance.UNINITIALIZED; - + private Set geneIdsToKeep = Collections.emptySet(); + private ModeOfInheritance modeOfInheritance = ModeOfInheritance.ANY; + + private FilterSettingsBuilder() {} + public FilterSettings build() { return new FilterSettingsImpl(this); } @@ -73,6 +103,11 @@ public FilterSettingsBuilder keepNonPathogenic(boolean keepNonPathogenic) { return this; } + public FilterSettingsBuilder removeFailedVariants(boolean removeFailedVariants) { + this.removeFailedVariants = removeFailedVariants; + return this; + } + public FilterSettingsBuilder removeKnownVariants(boolean removeKnownVariants) { this.removeKnownVariants = removeKnownVariants; return this; @@ -114,13 +149,18 @@ public boolean keepOffTargetVariants() { return keepOffTargetVariants; } + @Override + public boolean removeFailedVariants() { + return removeFailedVariants; + } + @Override public boolean removeKnownVariants() { return removeKnownVariants; } @Override - public boolean removePathFilterCutOff() { + public boolean keepNonPathogenicVariants() { return keepNonPathogenicVariants; } @@ -178,10 +218,7 @@ public boolean equals(Object obj) { if (!Objects.equals(this.genesToKeep, other.genesToKeep)) { return false; } - if (this.modeOfInheritance != other.modeOfInheritance) { - return false; - } - return true; + return this.modeOfInheritance == other.modeOfInheritance; } @Override diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterType.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterType.java new file mode 100644 index 000000000..65d0f29ec --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FilterType.java @@ -0,0 +1,61 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +/** + * This is a simple class of enumerated constants that describe the type of + * filtering that was applied to a Gene/Variant. + * * + * @author Peter Robinson + * @author Jules Jacobsen + */ +public enum FilterType { + + FAILED_VARIANT_FILTER("filter", "Failed previous VCF filters"), + QUALITY_FILTER("quality", "Quality"), + INTERVAL_FILTER("interval", "Interval"), + ENTREZ_GENE_ID_FILTER("gene-id", "Gene id"), + PATHOGENICITY_FILTER("path", "Pathogenicity"), + REGULATORY_FEATURE_FILTER("reg-feat", "Regulatory feature"), + FREQUENCY_FILTER("freq", "Frequency"), + KNOWN_VARIANT_FILTER("known-var", "Known variant"), + VARIANT_EFFECT_FILTER("var-effect", "Variant effect"), + INHERITANCE_FILTER("inheritance", "Inheritance"), + BED_FILTER("bed", "Gene panel target region (Bed)"), + PRIORITY_SCORE_FILTER("gene-priority", "Gene priority score"); + + private final String vcfValue; + private final String stringValue; + + FilterType(String vcfValue, String stringValue) { + this.vcfValue = vcfValue; + this.stringValue = stringValue; + } + + public String toVcfValue() { + return vcfValue; + } + + @Override + public String toString() { + return stringValue; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FrequencyDataProvider.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FrequencyDataProvider.java new file mode 100644 index 000000000..4905c81bb --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FrequencyDataProvider.java @@ -0,0 +1,61 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; + +import java.util.EnumSet; +import java.util.Set; + +/** + * Decorator implementation to provide variant frequency data to to the variant + * just before it is needed by the decorated VariantFilter. + * + * @author Jules Jacobsen + */ +public class FrequencyDataProvider extends AbstractFilterDataProvider { + + private final Set frequencySources; + + public FrequencyDataProvider(VariantDataService variantDataService, Set frequencySources, VariantFilter variantFilter) { + super(variantDataService, variantFilter); + + if (frequencySources.isEmpty()) { + this.frequencySources = EnumSet.noneOf(FrequencySource.class); + } else { + this.frequencySources = EnumSet.copyOf(frequencySources); + } + } + + @Override + public void provideVariantData(VariantEvaluation variantEvaluation) { + //check there are no frequencies first - this may be genuine, or possibly the variant hasn't yet had the data added + //this will cut down on trips to the database if multiple filters require frequency data. + if (variantEvaluation.getFrequencyData().getKnownFrequencies().isEmpty()) { + FrequencyData frequencyData = variantDataService.getVariantFrequencyData(variantEvaluation, frequencySources); + variantEvaluation.setFrequencyData(frequencyData); + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FrequencyFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FrequencyFilter.java new file mode 100644 index 000000000..bcfef4205 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/FrequencyFilter.java @@ -0,0 +1,146 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Objects; + +/** + * VariantFilter variants according to their frequency. + * + * @author Peter N Robinson + * @author Jules Jacobsen + * @version 0.09 (April 28, 2013) + */ +public class FrequencyFilter implements VariantFilter { + + private static final Logger logger = LoggerFactory.getLogger(FrequencyFilter.class); + + private static final FilterType filterType = FilterType.FREQUENCY_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + + /** + * Threshold for filtering. Retain only those variants whose frequency + * (expressed as a percentage) is below this threshold. The default value is + * 100%, i.e., no filtering out. + */ + private final float maxFreq; + + /** + * Creates a runFilter with a maximum frequency threshold for variants. + * + * @param maxFreq sets the maximum frequency threshold (percent value) of + * the minor allele required to pass the filer. For example a value of 1 + * will set the threshold of the minor allele frequency to under 1%. + */ + public FrequencyFilter(float maxFreq) { + if (maxFreq < 0f || maxFreq > 100f) { + throw new IllegalArgumentException(String.format("Illegal value for maximum frequency threshold: %2f. Value should be between 0 and 100", maxFreq)); + } + this.maxFreq = maxFreq; + } + + public float getMaxFreq() { + return maxFreq; + } + + /** + * Flag to output results of filtering against frequency with Thousand + * Genomes and ESP data. + */ + @Override + public FilterType getFilterType() { + return filterType; + } + + /** + * Returns true if the {@code VariantEvaluation} passes the runFilter. + * Returns a PASS or FAIL on the basis of the estimated frequency of the + * variant in the population. If the variant in question has a higher + * frequency than the threshold in either the dbSNP data or the ESP data, + * then we flag it as failed. + * + * @param variantEvaluation + * @return + */ + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + FrequencyData frequencyData = variantEvaluation.getFrequencyData(); + //frequency data is derived from the database - consequently make sure the data has been fetched otherwise the + //score will be the same for all variants. + float variantFrequencyScore = frequencyData.getScore(); + + if (passesFilter(frequencyData)) { + return PASS; + } + return FAIL; + } + + /** + * This method returns false if the variant is more common than the + * threshold in any one of the dbSNP data, or the ESP data for European + * Americans, African Americans, or All comers. + * + * @param frequencyData + * @return true if the variant being analyzed is rarer than the threshold + */ + protected boolean passesFilter(FrequencyData frequencyData) { + + for (Frequency frequency : frequencyData.getKnownFrequencies()) { + if (frequency.isOverThreshold(maxFreq)) { + return false; + } + } + return true; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 29 * hash + Float.floatToIntBits(this.maxFreq); + hash = 29 * hash + Objects.hashCode(FrequencyFilter.filterType); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final FrequencyFilter other = (FrequencyFilter) obj; + return Float.floatToIntBits(this.maxFreq) == Float.floatToIntBits(other.maxFreq); + } + + @Override + public String toString() { + return "FrequencyFilter{" + "maxFreq=" + maxFreq + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/GeneFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/GeneFilter.java new file mode 100644 index 000000000..3214b5456 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/GeneFilter.java @@ -0,0 +1,46 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.Gene; + +/** + * + * @author Jules Jacobsen + */ +public interface GeneFilter extends Filter { + + /** + * True or false depending on whether the {@code Gene} passes the runFilter + * or not. + * + * @param gene to be filtered + * @return true if the {@code Gene} passes the runFilter. + */ + @Override + FilterResult runFilter(Gene gene); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/GeneFilterRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/GeneFilterRunner.java new file mode 100644 index 000000000..dc1bf7db1 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/GeneFilterRunner.java @@ -0,0 +1,44 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.Gene; + +import java.util.List; + +/** + * + * @author Jules Jacobsen + */ +public interface GeneFilterRunner extends FilterRunner{ + + @Override + List run(GeneFilter geneFilter, List genes); + + @Override + List run(List geneFilters, List genes); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/InheritanceFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/InheritanceFilter.java new file mode 100644 index 000000000..f12f85f6a --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/InheritanceFilter.java @@ -0,0 +1,109 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.Objects; + +/** + * A Gene runFilter for filtering against a particular inheritance mode. + * + * @author Jules Jacobsen + */ +public class InheritanceFilter implements GeneFilter { + + private static final FilterType filterType = FilterType.INHERITANCE_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + private static final FilterResult NOT_RUN = FilterResult.notRun(filterType); + + private final ModeOfInheritance modeOfInheritance; + + public InheritanceFilter(ModeOfInheritance modeOfInheritance) { + this.modeOfInheritance = modeOfInheritance; + } + + public ModeOfInheritance getModeOfInheritance() { + return modeOfInheritance; + } + + @Override + public FilterResult runFilter(Gene gene) { + if (modeOfInheritance == ModeOfInheritance.ANY) { + //if ModeOfInheritance.ANY pass the runFilter - ideally it shouldn't be applied in the first place. + return NOT_RUN; + } + if (gene.isCompatibleWith(modeOfInheritance)) { + return addFilterResultToVariants(PASS, gene); + } + return addFilterResultToVariants(FAIL, gene); + } + + private FilterResult addFilterResultToVariants(FilterResult filterResult, Gene gene) { + for (VariantEvaluation variant : gene.getVariantEvaluations()) { + if (variant.isCompatibleWith(modeOfInheritance)) { + variant.addFilterResult(PASS); + } else { + variant.addFilterResult(FAIL); + } + } + return filterResult; + } + + @Override + public FilterType getFilterType() { + return filterType; + } + + @Override + public int hashCode() { + int hash = 3; + hash = 71 * hash + Objects.hashCode(this.modeOfInheritance); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final InheritanceFilter other = (InheritanceFilter) obj; + return this.modeOfInheritance == other.modeOfInheritance; + } + + @Override + public String toString() { + return filterType + " filter: ModeOfInheritance=" + modeOfInheritance; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/IntervalFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/IntervalFilter.java new file mode 100644 index 000000000..ef552bf52 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/IntervalFilter.java @@ -0,0 +1,128 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Objects; + +/** + * VariantFilter variants according to a linkage interval. For instance, if the + * interval is chr2:12345-67890, then we would only keep variants located + * between positions 12345 and 67890 on chromosome 2. All other variants are + * discarded. + *

+ * The interval must be given as chr2:12345-67890 (format), otherwise, an error + * message is given and no filtering is done. + * + * @author Peter N Robinson + * @version 0.08 (April 28, 2013) + */ +public class IntervalFilter implements VariantFilter { + + private static final Logger logger = LoggerFactory.getLogger(IntervalFilter.class); + + private static final FilterType filterType = FilterType.INTERVAL_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + + private final GeneticInterval interval; + + /** + * Constructor defining the genetic interval. + * + * @param interval the interval based on a String such as chr2:12345-67890. + */ + public IntervalFilter(GeneticInterval interval) { + this.interval = interval; + + } + + public GeneticInterval getGeneticInterval() { + return interval; + } + + /** + * @return an integer constant (as defined in exomizer.common.Constants) + * that will act as a flag to generate the output HTML dynamically depending + * on the filters that the user has chosen. + */ + @Override + public FilterType getFilterType() { + return filterType; + } + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + if (variantIsNotWithinInterval(variantEvaluation)) { + return FAIL; + } + return PASS; + } + + private boolean variantIsNotWithinInterval(Variant variant) { + if (variantNotOnSameChromosomeAsInterval(variant.getChromosome())) { + return true; + } else { + return variantPositionOutsideOfIntervalBounds(variant.getPosition()); + } + } + + private boolean variantNotOnSameChromosomeAsInterval(int variantChromosome) { + return variantChromosome != interval.getChromosome(); + } + + private boolean variantPositionOutsideOfIntervalBounds(int variantPosition) { + return variantPosition < interval.getStart() || variantPosition > interval.getEnd(); + } + + @Override + public int hashCode() { + int hash = 7; + hash = 97 * hash + Objects.hashCode(IntervalFilter.filterType); + hash = 97 * hash + Objects.hashCode(this.interval); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final IntervalFilter other = (IntervalFilter) obj; + return Objects.equals(this.interval, other.interval); + } + + @Override + public String toString() { + return "IntervalFilter{" + + "interval=" + interval + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/KnownVariantFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/KnownVariantFilter.java new file mode 100644 index 000000000..d6ac75e3e --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/KnownVariantFilter.java @@ -0,0 +1,79 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.Objects; + +/** + * Filter for removing variants which have been characterised in a database. + * This includes having an RSID assigned or having any frequency data. + * + * @author Jules Jacobsen + */ +public class KnownVariantFilter implements VariantFilter { + + private static final FilterType KNOWN_VARIANT_FILTER_TYPE = FilterType.KNOWN_VARIANT_FILTER; + + private static final FilterResult PASS = FilterResult.pass(KNOWN_VARIANT_FILTER_TYPE); + private static final FilterResult FAIL = FilterResult.fail(KNOWN_VARIANT_FILTER_TYPE); + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + if (notRepresentedInDatabase(variantEvaluation)) { + return PASS; + } + return FAIL; + } + + private boolean notRepresentedInDatabase(VariantEvaluation variantEvaluation) { + return !variantEvaluation.getFrequencyData().isRepresentedInDatabase(); + } + + @Override + public FilterType getFilterType() { + return KNOWN_VARIANT_FILTER_TYPE; + } + + @Override + public int hashCode() { + return Objects.hashCode(KNOWN_VARIANT_FILTER_TYPE); + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + return getClass() == obj.getClass(); + } + + @Override + public String toString() { + return "KnownVariantFilter{}"; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/NotRunFilterResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/NotRunFilterResult.java new file mode 100644 index 000000000..85308e07b --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/NotRunFilterResult.java @@ -0,0 +1,38 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +/** + * + * @author Jules Jacobsen + */ +final class NotRunFilterResult extends AbstractFilterResult { + + NotRunFilterResult(FilterType filterType) { + super(filterType, Status.NOT_RUN); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PassFilterResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PassFilterResult.java new file mode 100644 index 000000000..95ca8ecf2 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PassFilterResult.java @@ -0,0 +1,38 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +/** + * + * @author Jules Jacobsen + */ +final class PassFilterResult extends AbstractFilterResult { + + PassFilterResult(FilterType filterType) { + super(filterType, Status.PASS); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PathogenicityDataProvider.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PathogenicityDataProvider.java new file mode 100644 index 000000000..37baa160e --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PathogenicityDataProvider.java @@ -0,0 +1,62 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; + +import java.util.EnumSet; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public class PathogenicityDataProvider extends AbstractFilterDataProvider { + + private final Set pathogenicitySources; + + public PathogenicityDataProvider(VariantDataService variantDataService, Set pathogenicitySources, VariantFilter variantFilter) { + super(variantDataService, variantFilter); + + if (pathogenicitySources.isEmpty()) { + this.pathogenicitySources = EnumSet.noneOf(PathogenicitySource.class); + } else { + this.pathogenicitySources = EnumSet.copyOf(pathogenicitySources); + } + } + + @Override + public void provideVariantData(VariantEvaluation variantEvaluation) { + if (variantEvaluation.getPathogenicityData().isEmpty()) { + PathogenicityData pathData = variantDataService.getVariantPathogenicityData(variantEvaluation, pathogenicitySources); + variantEvaluation.setPathogenicityData(pathData); + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PathogenicityFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PathogenicityFilter.java new file mode 100644 index 000000000..136e3fbfc --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PathogenicityFilter.java @@ -0,0 +1,114 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import com.fasterxml.jackson.annotation.JsonProperty; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Objects; + +/** + * Filters variants according to their predicted pathogenicity. + * + * @author Peter N Robinson + * @author Jules Jacobsen + * @version 0.09 (29 December, 2012). + */ +public class PathogenicityFilter implements VariantFilter { + + private static final Logger logger = LoggerFactory.getLogger(PathogenicityFilter.class); + private static final FilterType filterType = FilterType.PATHOGENICITY_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + + private final boolean keepNonPathogenic; + + /** + * Produces a Pathogenicity filter using a user-defined pathogenicity + * threshold. The keepNonPathogenic parameter will apply the pathogenicity + * scoring, but no further filtering will be applied so all variants will + * pass irrespective of their score. + * + * @param keepNonPathogenic + */ + public PathogenicityFilter(boolean keepNonPathogenic) { + this.keepNonPathogenic = keepNonPathogenic; + } + + @JsonProperty + public boolean keepNonPathogenic() { + return keepNonPathogenic; + } + + /** + * Flag to output results of filtering against polyphen, SIFT, and mutation + * taster. + */ + @Override + public FilterType getFilterType() { + return filterType; + } + + /** + * VariantFilter variants based on their calculated pathogenicity. Those + * that pass have a pathogenicity score assigned to them. The failed ones + * are deemed to be non-pathogenic and marked as such. + * +*/ + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + if (keepNonPathogenic) { + return PASS; + } + if (variantEvaluation.isPredictedPathogenic()) { + return PASS; + } + return FAIL; + } + + @Override + public int hashCode() { + int hash = 5; + hash = 97 * hash + Objects.hashCode(PathogenicityFilter.filterType); + hash = 97 * hash + (this.keepNonPathogenic ? 1 : 0); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final PathogenicityFilter other = (PathogenicityFilter) obj; + return this.keepNonPathogenic == other.keepNonPathogenic; + } + + @Override + public String toString() { + return "PathogenicityFilter{" + "keepNonPathogenic=" + keepNonPathogenic + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PriorityScoreFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PriorityScoreFilter.java new file mode 100644 index 000000000..9778ad0c6 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/PriorityScoreFilter.java @@ -0,0 +1,125 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import com.fasterxml.jackson.annotation.JsonRootName; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.util.Objects; + +/** + * + * @author Jules Jacobsen + */ +@JsonRootName("priorityScoreFilter") +public class PriorityScoreFilter implements GeneFilter { + + private static final FilterType filterType = FilterType.PRIORITY_SCORE_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + + private final float minPriorityScore; + + private final PriorityType priorityType; + + public PriorityScoreFilter(PriorityType priorityType, float minPriorityScore) { + this.minPriorityScore = minPriorityScore; + this.priorityType = priorityType; + } + + public PriorityType getPriorityType() { + return priorityType; + } + + public float getMinPriorityScore() { + return minPriorityScore; + } + + @Override + public FilterType getFilterType() { + return filterType; + } + + /** + * Fails all Genes with a priority score below the set threshold. Note that + * un-prioritised genes will have a score of 0 and will therefore fail this + * filter by default. + * + * @param gene + * @return + */ + @Override + public FilterResult runFilter(Gene gene) { + PriorityResult priorityResult = gene.getPriorityResult(priorityType); + if (priorityResult == null) { + return FAIL; + } + if (priorityResult.getScore() >= minPriorityScore) { + return addFilterResultToVariants(PASS, gene); + } + return addFilterResultToVariants(FAIL, gene); + } + + private FilterResult addFilterResultToVariants(FilterResult filterResult, Gene gene) { + for (VariantEvaluation variant : gene.getVariantEvaluations()) { + variant.addFilterResult(filterResult); + } + return filterResult; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 17 * hash + Float.floatToIntBits(this.minPriorityScore); + hash = 17 * hash + Objects.hashCode(this.priorityType); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final PriorityScoreFilter other = (PriorityScoreFilter) obj; + if (Float.floatToIntBits(this.minPriorityScore) != Float.floatToIntBits(other.minPriorityScore)) { + return false; + } + return this.priorityType == other.priorityType; + } + + @Override + public String toString() { + return "PriorityScoreFilter{" + "priorityType=" + priorityType + ", minPriorityScore=" + minPriorityScore + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/QualityFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/QualityFilter.java new file mode 100644 index 000000000..f5d6a54fe --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/QualityFilter.java @@ -0,0 +1,118 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +/** + * VariantFilter Variants on the basis of the PHRED quality score for the + * variant that was derived from the VCF file (QUAL field). + * + * @author Peter N Robinson + * @author Jules Jacobsen + * @version 0.09 (18 December, 2013). + */ +public class QualityFilter implements VariantFilter { + + private static final Logger logger = LoggerFactory.getLogger(QualityFilter.class); + + private static final FilterType filterType = FilterType.QUALITY_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + + /** + * Threshold for filtering. Retain only those variants whose PHRED variant + * call quality is at least as good. The default is 1. + */ + private final double mimimumQualityThreshold; + + /** + * Constructs a VariantFilter for removing variants which do not pass the + * defined PHRED score. + * + * n.b. We are no longer filtering by requiring a minimum number of reads + * for each DP4 field (alt/ref in both directions). Instead, we are just + * filtering on the overall PHRED variant call quality. + * + * @param mimimumQualityThreshold The minimum PHRED quality threshold (e.g. + * 30) under which a variant will be filtered out. + */ + public QualityFilter(double mimimumQualityThreshold) { + if (mimimumQualityThreshold <= 0f) { + throw new IllegalArgumentException(String.format("Illegal value for minimum quality threshold: %2f. Minimum quality threshold must be greater than 0.0", mimimumQualityThreshold)); + } + this.mimimumQualityThreshold = mimimumQualityThreshold; + } + + public double getMimimumQualityThreshold() { + return mimimumQualityThreshold; + } + + /** + * Flag for output field representing the QUAL column of the VCF file. + */ + @Override + public FilterType getFilterType() { + return filterType; + } + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + double phredScore = variantEvaluation.getPhredScore(); + if (overQualityThreshold(phredScore)) { + return PASS; + } + // Variant is not of good quality + return FAIL; + } + + protected boolean overQualityThreshold(double qualityScore) { + return qualityScore >= mimimumQualityThreshold; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 59 * hash + (int) (Double.doubleToLongBits(this.mimimumQualityThreshold) ^ (Double.doubleToLongBits(this.mimimumQualityThreshold) >>> 32)); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final QualityFilter other = (QualityFilter) obj; + return Double.doubleToLongBits(this.mimimumQualityThreshold) == Double.doubleToLongBits(other.mimimumQualityThreshold); + } + + @Override + public String toString() { + return "QualityFilter{" + "mimimumQualityThreshold=" + mimimumQualityThreshold + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/RegulatoryFeatureFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/RegulatoryFeatureFilter.java new file mode 100644 index 000000000..4cf4f6dbe --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/RegulatoryFeatureFilter.java @@ -0,0 +1,98 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import com.fasterxml.jackson.annotation.JsonRootName; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.monarchinitiative.exomiser.core.model.TranscriptAnnotation; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Objects; + +/** + * @author Jules Jacobsen + */ +@JsonRootName("regulatoryFeatureFilter") +public class RegulatoryFeatureFilter implements VariantFilter { + + private static final Logger logger = LoggerFactory.getLogger(RegulatoryFeatureFilter.class); + + private static final FilterType filterType = FilterType.REGULATORY_FEATURE_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + + @Override + public FilterType getFilterType() { + return filterType; + } + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + VariantEffect effect = variantEvaluation.getVariantEffect(); + // Note the INTERGENIC/UPSTREAM variants have already been assessed by the RegFeatureDAO and VariantEffect set to REGULATORY_REGION_VARIANT if in a known region + // TODO make below nicer using a Jannovar method hopefully + if (effect.equals(VariantEffect.INTERGENIC_VARIANT) || effect.equals(VariantEffect.UPSTREAM_GENE_VARIANT)){ + // GeneReassigner can assign a new empty list + if (variantEvaluation.getAnnotations().isEmpty()){ + return FAIL; + } + int dist = getDistFromNearestGene(variantEvaluation); + if (dist >= 0 && dist < 20000){ + return PASS; + } + return FAIL; + } + return PASS; + } + + private int getDistFromNearestGene(VariantEvaluation variantEvaluation) { + TranscriptAnnotation annotation = variantEvaluation.getAnnotations().get(0); + return Math.abs(annotation.getDistanceFromNearestGene()); + } + + @Override + public int hashCode() { + int hash = 7; + hash = 37 * hash + Objects.hashCode(RegulatoryFeatureFilter.filterType); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final RegulatoryFeatureFilter other = (RegulatoryFeatureFilter) obj; + return Objects.equals(this.getFilterType(), other.getFilterType()); + } + + @Override + public String toString() { + return "RegulatoryFeatureFilter{" + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SimpleGeneFilterRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SimpleGeneFilterRunner.java new file mode 100644 index 000000000..768a63822 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SimpleGeneFilterRunner.java @@ -0,0 +1,88 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.Gene; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.LinkedHashSet; +import java.util.List; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public class SimpleGeneFilterRunner implements GeneFilterRunner { + + private static final Logger logger = LoggerFactory.getLogger(SimpleGeneFilterRunner.class); + + @Override + public List run(List filters, List genes) { + logger.info("Filtering {} genes using non-destructive simple filtering", genes.size()); + for (Gene gene : genes) { + if (gene.passedFilters()) { + runAllFiltersOverGene(filters, gene); + } + } + logger.info("Ran {} filters over {} genes using non-destructive simple filtering.", getFilterTypes(filters), genes.size()); + return genes; + } + + @Override + public List run(GeneFilter filter, List genes) { + for (Gene gene : genes) { + if (gene.passedFilters()) { + runFilterAndAddResult(filter, gene); + } + } + return genes; + } + + private void runAllFiltersOverGene(List filters, Gene gene) { + for (Filter filter : filters) { + runFilterAndAddResult(filter, gene); + } + } + + private FilterResult runFilterAndAddResult(Filter filter, Gene gene) { + FilterResult filterResult = filter.runFilter(gene); + if (filterResult.wasRun()) { + gene.addFilterResult(filterResult); + } + return filterResult; + } + + private Set getFilterTypes(List filters) { + Set filtersRun = new LinkedHashSet<>(); + for (Filter filter : filters) { + filtersRun.add(filter.getFilterType()); + } + return filtersRun; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SimpleVariantFilterRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SimpleVariantFilterRunner.java new file mode 100644 index 000000000..1989ef68b --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SimpleVariantFilterRunner.java @@ -0,0 +1,97 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.Filterable; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.LinkedHashSet; +import java.util.List; +import java.util.Set; + +/** + * Applies the given {@code VariantFilter} to the {@code VariantEvaluation}. + * This can be done in a 'non-destructive' manner such that every + * {@code VariantEvaluation} is passed through each and every run, or in a + * 'destructive' manner where only {@code VariantEvaluation} which pass through + * all the desired filters are returned at the end. + * + * This simple implementation of the {@code VariantFilter} assumes that all the + * necessary data has been applied to the {@code VariantEvaluation} being + * filtered beforehand. If it hasn't then the results will be wrong + * + * @author Jules Jacobsen + */ +public class SimpleVariantFilterRunner implements VariantFilterRunner { + + private static final Logger logger = LoggerFactory.getLogger(SimpleVariantFilterRunner.class); + + @Override + public List run(List variantFilters, List variantEvaluations) { + logger.info("Filtering {} variants using simple filtering...", variantEvaluations.size()); + for (VariantEvaluation variantEvaluation : variantEvaluations) { + run(variantFilters, variantEvaluation); + } + logger.info("Ran {} filters over {} variants using simple filtering.", getFilterTypes(variantFilters), variantEvaluations.size()); + return variantEvaluations; + } + + @Override + public List run(VariantFilter filter, List filterables) { + for (VariantEvaluation variantEvaluation : filterables) { + run(filter, variantEvaluation); + } + return filterables; + } + + private void run(List variantFilters, VariantEvaluation variantEvaluation) { + for (VariantFilter filter : variantFilters) { + run(filter, variantEvaluation); + } + } + + @Override + public FilterResult run(Filter filter, VariantEvaluation variantEvaluation) { + return runFilterAndAddResult(filter, variantEvaluation); + } + + protected FilterResult runFilterAndAddResult(Filter filter, Filterable filterable) { + FilterResult filterResult = filter.runFilter(filterable); + filterable.addFilterResult(filterResult); + return filterResult; + } + + protected Set getFilterTypes(List filters) { + Set filtersRun = new LinkedHashSet<>(); + for (Filter filter : filters) { + filtersRun.add(filter.getFilterType()); + } + return filtersRun; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SparseVariantFilterRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SparseVariantFilterRunner.java new file mode 100644 index 000000000..8e66a495a --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/SparseVariantFilterRunner.java @@ -0,0 +1,103 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.ArrayList; +import java.util.List; + +/** + * @author Jules Jacobsen + */ +public class SparseVariantFilterRunner extends SimpleVariantFilterRunner { + + private static final Logger logger = LoggerFactory.getLogger(SparseVariantFilterRunner.class); + + /** + * @param filters + * @param variantEvaluations + * @return + */ + @Override + public List run(List filters, List variantEvaluations) { + logger.info("Filtering {} variants using sparse filtering...", variantEvaluations.size()); + + if (ifThereAreNoFiltersToRun(filters)) { + return variantEvaluations; + } + + List filteredVariantEvaluations = runFilters(filters, variantEvaluations); + + int numRemoved = variantEvaluations.size() - filteredVariantEvaluations.size(); + logger.info("Filtering for {} removed {} of {} variants - returning {} filtered variants.", getFilterTypes(filters), numRemoved, variantEvaluations.size(), filteredVariantEvaluations.size()); + return filteredVariantEvaluations; + } + + @Override + public List run(VariantFilter filter, List variantEvaluations) { + for (VariantEvaluation variantEvaluation : variantEvaluations) { + if (variantEvaluation.passedFilters()) { + run(filter, variantEvaluation); + } + } + return makeListofFilteredVariants(variantEvaluations); + } + + private boolean ifThereAreNoFiltersToRun(List filters) { + if (filters.isEmpty()) { + logger.info("Unable to filter variants against empty Filter list - returning all variants"); + return true; + } + return false; + } + + private List runFilters(List filters, List variantEvaluations) { + + for (Filter filter : filters) { + for (VariantEvaluation variantEvaluation : variantEvaluations) { + //the only difference between sparse and full filtering is this if clause here... + if (variantEvaluation.passedFilters()) { + run(filter, variantEvaluation); + } + } + } + return makeListofFilteredVariants(variantEvaluations); + } + + private List makeListofFilteredVariants(List variantEvaluations) { + List filteredVariantEvaluations = new ArrayList<>(); + for (VariantEvaluation variant : variantEvaluations) { + if (variant.passedFilters()) { + filteredVariantEvaluations.add(variant); + } + } + return filteredVariantEvaluations; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantEffectFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantEffectFilter.java new file mode 100644 index 000000000..fd90a1182 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantEffectFilter.java @@ -0,0 +1,97 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import com.google.common.collect.Sets; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Objects; +import java.util.Set; + +/** + * Filters variants according to their {@link VariantEffect}. The filter will mark variants as failed if they are contained + * in the set of specified {@link VariantEffect}. + * + * @author Peter N Robinson + * @author Jules Jacobsen + */ +public class VariantEffectFilter implements VariantFilter { + + private static final Logger logger = LoggerFactory.getLogger(VariantEffectFilter.class); + + private static final FilterType filterType = FilterType.VARIANT_EFFECT_FILTER; + + private static final FilterResult PASS = FilterResult.pass(filterType); + private static final FilterResult FAIL = FilterResult.fail(filterType); + + private final Set offTargetVariantTypes; + + public VariantEffectFilter(Set notWanted) { + offTargetVariantTypes = Sets.immutableEnumSet(notWanted); + } + + public Set getOffTargetVariantTypes() { + return offTargetVariantTypes; + } + + @Override + public FilterType getFilterType() { + return filterType; + } + + @Override + public FilterResult runFilter(VariantEvaluation filterable) { + VariantEffect effect = filterable.getVariantEffect(); + if (offTargetVariantTypes.contains(effect)) { + return FAIL; + } + return PASS; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 37 * hash + Objects.hashCode(VariantEffectFilter.filterType); + hash = 37 * hash + Objects.hashCode(this.offTargetVariantTypes); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final VariantEffectFilter other = (VariantEffectFilter) obj; + return Objects.equals(this.offTargetVariantTypes, other.offTargetVariantTypes); + } + + @Override + public String toString() { + return "VariantEffectFilter{" + "offTargetVariantTypes=" + offTargetVariantTypes + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilter.java new file mode 100644 index 000000000..d1d8b76c8 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilter.java @@ -0,0 +1,45 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +/** + * This interface is implemented by classes that perform filtering of the + * variants in the VCF file according to various criteria. A + * {@code FilterResult} gets returned for each {@code VariantEvaluation}. + * + * @author Jules Jacobsen + * @author Peter N Robinson + * @version 0.07 (April 28, 2013). + */ +public interface VariantFilter extends Filter { + + /** + * Returns a {@code FilterResult} indicating whether the + * {@code VariantEvaluation} passed or failed the {@code Filter}. + * + * @param variantEvaluation to be filtered + */ + @Override + FilterResult runFilter(VariantEvaluation variantEvaluation); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilterDataProvider.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilterDataProvider.java new file mode 100644 index 000000000..308716f5b --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilterDataProvider.java @@ -0,0 +1,43 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +/** + * Decorator interface to provide data for variants just in time for the filter + * which requires it. + * + * @author Jules Jacobsen + */ +public interface VariantFilterDataProvider extends VariantFilter { + + /** + * Provides the variantEvaluation with the implementation-specific data. + * @param variantEvaluation + */ + void provideVariantData(VariantEvaluation variantEvaluation); + + /** + * @return the decorated filter which the DataProvider is providing data for. + */ + VariantFilter getDecoratedFilter(); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilterRunner.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilterRunner.java new file mode 100644 index 000000000..279b60a70 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/filters/VariantFilterRunner.java @@ -0,0 +1,46 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.List; + +/** + * + * @author Jules Jacobsen + */ +public interface VariantFilterRunner extends FilterRunner{ + + @Override + List run(VariantFilter variantFilter, List variantEvaluations); + + @Override + List run(List variantFilters, List variantEvaluations); + + FilterResult run(Filter filter, VariantEvaluation variantEvaluation); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/GeneFactory.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/GeneFactory.java new file mode 100644 index 000000000..9e6671658 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/GeneFactory.java @@ -0,0 +1,123 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome; + +import com.google.common.collect.ImmutableSet; +import de.charite.compbio.jannovar.data.JannovarData; +import de.charite.compbio.jannovar.reference.TranscriptModel; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +import java.util.*; +import java.util.function.Function; + +import static java.util.stream.Collectors.toList; + +/** + * Creates a {@code List} of {@code Gene} from a {@code List} of + * {@code VariantEvaluation}. + * + * @author Jules Jacobsen + */ +@Component +public class GeneFactory { + + private static final Logger logger = LoggerFactory.getLogger(GeneFactory.class); + + private final JannovarData jannovarData; + + @Autowired + public GeneFactory(JannovarData jannovarData) { + this.jannovarData = jannovarData; + } + + /** + * Returns a list of genes from the JannovarData TranscriptModels. + * @return + */ + public List createKnownGenes() { + List knownGenes = createKnownGeneIds().stream() + // We're assuming the GeneIdentifier includes Entrez ids here. They should be present. + // If not the entire analysis will fail. + .map(Gene::new) + .collect(toList()); + logger.info("Created {} known genes.", knownGenes.size()); + return knownGenes; + } + + public Set createKnownGeneIds() { + ImmutableSet.Builder geneIdentifiers = ImmutableSet.builder(); + int identifiers = 0; + int noEntrezId = 0; + for (String geneSymbol : jannovarData.getTmByGeneSymbol().keySet()) { + Collection transcriptModels = jannovarData.getTmByGeneSymbol().get(geneSymbol); + GeneIdentifier geneIdentifier = transcriptModels.stream() + .filter(Objects::nonNull) + .filter(transcriptModel -> transcriptModel.getGeneID() != null) + .filter(transcriptModel -> !transcriptModel.getGeneID().equals("null")) + .map(toGeneIdentifier()) + .distinct() + .findFirst() + .orElse(GeneIdentifier.builder().geneSymbol(geneSymbol).build()); + + if (geneIdentifier.getEntrezId().isEmpty()) { + noEntrezId++; + logger.debug("No geneId associated with gene symbol {} geneId set to {}", geneSymbol, geneIdentifier); + } + identifiers++; + geneIdentifiers.add(geneIdentifier); + } + int geneIds = identifiers - noEntrezId; + logger.info("Created {} gene identifiers ({} genes, {} without EntrezId)", identifiers, geneIds, noEntrezId); + return geneIdentifiers.build(); + } + + private Function toGeneIdentifier() { + //logger.info("{} {} {} {}", transcriptModel.getGeneSymbol(), transcriptModel.getGeneID(), transcriptModel.getAccession(), transcriptModel.getAltGeneIDs()); + //Using ucsc_hg19: LMOD1 ENTREZ25802 uc010ppu.2 null (pre-jannovar 0.19) + //Using hg19_ucsc: LMOD1 25802 uc010ppu.2 {CCDS_ID=CCDS53457, COSMIC_ID=LMOD1, ENSEMBL_GENE_ID=ENSG00000163431, ENTREZ_ID=25802, HGNC_ALIAS=64kD|D1|1D, HGNC_ID=HGNC:6647, HGNC_PREVIOUS=, HGNC_SYMBOL=LMOD1, MGD_ID=MGI:2135671, OMIM_ID=602715, PUBMED_ID=, REFSEQ_ACCESSION=NM_012134, RGD_ID=RGD:1307236, UCSC_ID=uc057oju.1, UNIPROT_ID=P29536, VEGA_ID=OTTHUMG00000035802} + //Using hg19_ensembl: LMOD1 ENSG00000163431 ENST00000367288 {CCDS_ID=CCDS53457, COSMIC_ID=LMOD1, ENSEMBL_GENE_ID=ENSG00000163431, ENTREZ_ID=25802, HGNC_ALIAS=64kD|D1|1D, HGNC_ID=HGNC:6647, HGNC_PREVIOUS=, HGNC_SYMBOL=LMOD1, MGD_ID=MGI:2135671, OMIM_ID=602715, PUBMED_ID=, REFSEQ_ACCESSION=NM_012134, RGD_ID=RGD:1307236, UCSC_ID=uc057oju.1, UNIPROT_ID=P29536, VEGA_ID=OTTHUMG00000035802} + return transcriptModel -> { + String geneId = transcriptModel.getGeneID(); + String geneSymbol = transcriptModel.getGeneSymbol(); + Map altGeneIds = transcriptModel.getAltGeneIDs(); + return GeneIdentifier.builder() + .geneSymbol(geneSymbol) + .geneId((geneId == null || geneId.equals("null"))? "" : geneId) + .hgncId(altGeneIds.getOrDefault("HGNC_ID", "")) + .hgncSymbol(altGeneIds.getOrDefault("HGNC_SYMBOL", "")) + .entrezId(altGeneIds.getOrDefault("ENTREZ_ID", "")) + .ensemblId(altGeneIds.getOrDefault("ENSEMBL_GENE_ID", "")) + .ucscId(altGeneIds.getOrDefault("UCSC_ID", "")) + .build(); + }; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/JannovarVariantAnnotator.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/JannovarVariantAnnotator.java new file mode 100644 index 000000000..57823587e --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/JannovarVariantAnnotator.java @@ -0,0 +1,94 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.annotation.VariantAnnotations; +import de.charite.compbio.jannovar.annotation.VariantAnnotator; +import de.charite.compbio.jannovar.annotation.builders.AnnotationBuilderOptions; +import de.charite.compbio.jannovar.data.JannovarData; +import de.charite.compbio.jannovar.data.ReferenceDictionary; +import de.charite.compbio.jannovar.reference.GenomePosition; +import de.charite.compbio.jannovar.reference.GenomeVariant; +import de.charite.compbio.jannovar.reference.PositionType; +import de.charite.compbio.jannovar.reference.Strand; +import org.monarchinitiative.exomiser.core.model.AllelePosition; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +/** + * @author Jules Jacobsen + */ +@Component +public class JannovarVariantAnnotator { + + private static final Logger logger = LoggerFactory.getLogger(JannovarVariantAnnotator.class); + + private final ReferenceDictionary referenceDictionary; + private final VariantAnnotator variantAnnotator; + + //in cases where a variant cannot be positioned on a chromosome we're going to use 0 in order to fulfil the + //requirement of a variant having an integer chromosome + private static final int UNKNOWN_CHROMOSOME = 0; + + @Autowired + public JannovarVariantAnnotator(JannovarData jannovarData) { + this.referenceDictionary = jannovarData.getRefDict(); + this.variantAnnotator = new VariantAnnotator(jannovarData.getRefDict(), jannovarData.getChromosomes(), new AnnotationBuilderOptions()); + } + + public VariantAnnotations getVariantAnnotations(String contig, AllelePosition allelePosition) { + return getVariantAnnotations(contig, allelePosition.getPos(), allelePosition.getRef(), allelePosition.getAlt()); + } + + public VariantAnnotations getVariantAnnotations(String contig, int pos, String ref, String alt) { + GenomeVariant genomeVariant = buildOneBasedFwdStrandGenomicVariant(contig, pos, ref, alt); + if (genomeVariant.getChr() == UNKNOWN_CHROMOSOME) { + logger.trace("Unknown contig '{}' - mapping to {}", contig, UNKNOWN_CHROMOSOME); + //Need to check this here and return otherwise the variantAnnotator will throw a NPE. + return VariantAnnotations.buildEmptyList(genomeVariant); + } + return buildAnnotations(genomeVariant); + } + + private VariantAnnotations buildAnnotations(GenomeVariant genomeVariant) { + try { + return variantAnnotator.buildAnnotations(genomeVariant); + } catch (Exception e) { + logger.debug("Unable to annotate variant {}-{}-{}-{}", genomeVariant.getChrName(), genomeVariant.getPos(), genomeVariant + .getRef(), genomeVariant.getAlt(), e); + } + return VariantAnnotations.buildEmptyList(genomeVariant); + } + + + private GenomeVariant buildOneBasedFwdStrandGenomicVariant(String contig, int pos, String ref, String alt) { + int chr = getIntValueOfChromosomeOrZero(contig); + GenomePosition genomePosition = new GenomePosition(referenceDictionary, Strand.FWD, chr, pos, PositionType.ONE_BASED); + return new GenomeVariant(genomePosition, ref, alt); + } + + private Integer getIntValueOfChromosomeOrZero(String contig) { + return referenceDictionary.getContigNameToID().getOrDefault(contig, UNKNOWN_CHROMOSOME); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantAnnotationData.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantAnnotationData.java new file mode 100644 index 000000000..3ca770826 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantAnnotationData.java @@ -0,0 +1,55 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.data.JannovarData; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +/** + * Provides a wrapper around the variant annotations in JannovarData. + * + * @author Jules Jacobsen + */ +@Component +public class VariantAnnotationData { + + private static final Logger logger = LoggerFactory.getLogger(VariantAnnotationData.class); + + private final JannovarData jannovarData; + + @Autowired + public VariantAnnotationData(JannovarData jannovarData) { + this.jannovarData = jannovarData; + } + + public JannovarData getJannovarData() { + return jannovarData; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantDataService.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantDataService.java new file mode 100644 index 000000000..5d1cc7d17 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantDataService.java @@ -0,0 +1,53 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome; + +import org.monarchinitiative.exomiser.core.model.RegulatoryFeature; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; + +import java.util.List; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public interface VariantDataService { + + FrequencyData getVariantFrequencyData(Variant variant, Set frequencySources); + + PathogenicityData getVariantPathogenicityData(Variant variant, Set pathogenicitySources); + + List getRegulatoryFeatures(); + + List getTopologicallyAssociatedDomains(); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceImpl.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceImpl.java new file mode 100644 index 000000000..1f7eeb5f5 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceImpl.java @@ -0,0 +1,145 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + + +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.monarchinitiative.exomiser.core.genome.dao.*; +import org.monarchinitiative.exomiser.core.model.RegulatoryFeature; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityScore; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Service; + +import javax.annotation.Resource; +import java.util.ArrayList; +import java.util.List; +import java.util.Set; + +import static java.util.stream.Collectors.toSet; + +/** + * + * @author Jules Jacobsen + */ +@Service +public class VariantDataServiceImpl implements VariantDataService { + + private static final Logger logger = LoggerFactory.getLogger(VariantDataServiceImpl.class); + + @Resource(name = "defaultFrequencyDao") + private FrequencyDao defaultFrequencyDao; + @Resource(name = "localFrequencyDao") + private FrequencyDao localFrequencyDao; + @Autowired + private PathogenicityDao pathogenicityDao; + @Resource(name = "caddDao") + private CaddDao caddDao; + @Resource(name = "remmDao") + private RemmDao remmDao; + @Autowired + private RegulatoryFeatureDao regulatoryFeatureDao; + @Autowired + private TadDao tadDao; + + @Override + public FrequencyData getVariantFrequencyData(Variant variant, Set frequencySources) { + List allFrequencies = new ArrayList<>(); + FrequencyData allFrequencyData = defaultFrequencyDao.getFrequencyData(variant); + allFrequencies.addAll(allFrequencyData.getKnownFrequencies()); + + if (frequencySources.contains(FrequencySource.LOCAL)) { + FrequencyData localFrequencyData = localFrequencyDao.getFrequencyData(variant); + allFrequencies.addAll(localFrequencyData.getKnownFrequencies()); + } + + return frequencyDataFromSpecifiedSources(allFrequencyData.getRsId(), allFrequencies, frequencySources); + } + + FrequencyData frequencyDataFromSpecifiedSources(RsId rsid, List allFrequencies, Set frequencySources) { + Set wanted = allFrequencies.stream() + .filter(frequency -> frequencySources.contains(frequency.getSource())) + .collect(toSet()); + if (rsid.isEmpty() && wanted.isEmpty()) { + return FrequencyData.empty(); + } + return FrequencyData.of(rsid, wanted); + } + + @Override + public PathogenicityData getVariantPathogenicityData(Variant variant, Set pathogenicitySources) { + //OK, this is a bit stupid, but if no sources are defined we're not going to bother checking for data + if (pathogenicitySources.isEmpty()) { + return PathogenicityData.empty(); + } + //TODO: ideally we'd have some sort of compact, high-performance document store for this sort of data rather than several different datasources to query and ship. + List allPathScores = new ArrayList<>(); + final VariantEffect variantEffect = variant.getVariantEffect(); + //Polyphen, Mutation Taster and SIFT are all trained on missense variants - this is what is contained in the original variant table, but we shouldn't know that. + if (variantEffect == VariantEffect.MISSENSE_VARIANT) { + PathogenicityData missenseScores = pathogenicityDao.getPathogenicityData(variant); + allPathScores.addAll(missenseScores.getPredictedPathogenicityScores()); + } + else if (pathogenicitySources.contains(PathogenicitySource.REMM) && variant.isNonCodingVariant()) { + //REMM is trained on non-coding regulatory bits of the genome, this outperforms CADD for non-coding variants + PathogenicityData nonCodingScore = remmDao.getPathogenicityData(variant); + allPathScores.addAll(nonCodingScore.getPredictedPathogenicityScores()); + } + + //CADD does all of it although is not as good as REMM for the non-coding regions. + if (pathogenicitySources.contains(PathogenicitySource.CADD)) { + PathogenicityData caddScore = caddDao.getPathogenicityData(variant); + allPathScores.addAll(caddScore.getPredictedPathogenicityScores()); + } + + return pathDataFromSpecifiedDataSources(allPathScores, pathogenicitySources); + } + + protected PathogenicityData pathDataFromSpecifiedDataSources(List allPathScores, Set pathogenicitySources) { + Set wanted = allPathScores.stream() + .filter(pathogenicity -> pathogenicitySources.contains(pathogenicity.getSource())) + .collect(toSet()); + if (wanted.isEmpty()) { + return PathogenicityData.empty(); + } + return PathogenicityData.of(wanted); + } + + @Override + public List getRegulatoryFeatures() { + return regulatoryFeatureDao.getRegulatoryFeatures(); + } + + @Override + public List getTopologicallyAssociatedDomains() { + return tadDao.getAllTads(); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantFactory.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantFactory.java new file mode 100644 index 000000000..24e28d123 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/VariantFactory.java @@ -0,0 +1,327 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.annotation.Annotation; +import de.charite.compbio.jannovar.annotation.VariantAnnotations; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.data.JannovarData; +import de.charite.compbio.jannovar.reference.GenomeVariant; +import de.charite.compbio.jannovar.reference.TranscriptModel; +import htsjdk.variant.variantcontext.Allele; +import htsjdk.variant.variantcontext.Genotype; +import htsjdk.variant.variantcontext.VariantContext; +import htsjdk.variant.vcf.VCFFileReader; +import org.monarchinitiative.exomiser.core.model.AllelePosition; +import org.monarchinitiative.exomiser.core.model.TranscriptAnnotation; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +import java.nio.file.Path; +import java.time.Duration; +import java.time.Instant; +import java.util.*; +import java.util.concurrent.atomic.AtomicInteger; +import java.util.function.Consumer; +import java.util.function.Function; +import java.util.function.Predicate; +import java.util.stream.Stream; + +/** + * Produces Variants from VCF files. + * + * @author Jules Jacobsen + */ +@Component +public class VariantFactory { + + private static final Logger logger = LoggerFactory.getLogger(VariantFactory.class); + + private final JannovarVariantAnnotator variantAnnotator; + + //in cases where a variant cannot be positioned on a chromosome we're going to use 0 in order to fulfil the + //requirement of a variant having an integer chromosome + private static final int UNKNOWN_CHROMOSOME = 0; + + @Autowired + public VariantFactory(JannovarData jannovarData) { + this.variantAnnotator = new JannovarVariantAnnotator(jannovarData); + } + + public Stream streamVariantEvaluations(Path vcfPath) { + return streamVariantEvaluations(streamVariantContexts(vcfPath)); + } + + public Stream streamVariantEvaluations(Stream variantContextStream) { + logger.info("Annotating variant records, trimming sequences and normalising positions..."); + VariantCounter counter = new VariantCounter(); + return variantContextStream + .peek(counter.countVariantContext()) + .flatMap(toVariantEvaluations()) + .peek(counter.countAnnotatedVariant()) + .onClose(counter::logCount); + } + + public Stream streamVariantContexts(Path vcfPath) { + logger.info("Streaming variants from file {}", vcfPath); + try (VCFFileReader vcfReader = new VCFFileReader(vcfPath.toFile(), false)) { + return vcfReader.iterator().stream(); + } + } + + /** + * An Exomiser VariantEvaluation is a single-allele variant whereas the VariantContext can have multiple alleles. + * This means that a multi allele Variant record in a VCF can result in several VariantEvaluations - one for each + * alternate allele. + */ + private Function> toVariantEvaluations() { + return variantContext -> variantContext.getAlternateAlleles().stream() + .map(buildAlleleVariantEvaluation(variantContext)) + .filter(Optional::isPresent) + .map(Optional::get); + } + + private Function> buildAlleleVariantEvaluation(VariantContext variantContext) { + return allele -> { + //alternate Alleles are always after the reference allele, which is 0 + int altAlleleId = variantContext.getAlleleIndex(allele) - 1; + if (alleleIsObservedInGenotypes(allele, variantContext)) { + return Optional.of(buildVariantEvaluation(variantContext, altAlleleId)); + } + return Optional.empty(); + }; + } + + private boolean alleleIsObservedInGenotypes(Allele allele, VariantContext variantContext) { + return variantContext.getGenotypes().stream().anyMatch(alleleObservedInGenotype(allele)); + } + + private Predicate alleleObservedInGenotype(Allele allele) { + return genotype -> genotype.getAlleles().stream().anyMatch(allele::equals); + } + + /** + * Creates a VariantEvaluation made from all the relevant bits of the + * VariantContext and VariantAnnotations for a given alternative allele. + * + * @param variantContext + * @param altAlleleId + * @return + */ + VariantEvaluation buildVariantEvaluation(VariantContext variantContext, int altAlleleId) { + AllelePosition trimmedAllele = trimVcfAllele(variantContext, altAlleleId); + VariantAnnotations variantAnnotations = getVariantAnnotations(variantContext, trimmedAllele); + if (variantAnnotations.hasAnnotation()) { + return annotatedVariantEvaluation(variantContext, altAlleleId, trimmedAllele, variantAnnotations); + } else return unAnnotatedVariantEvaluation(variantContext, altAlleleId, trimmedAllele); + } + + private AllelePosition trimVcfAllele(VariantContext variantContext, int altAlleleId) { + int vcfPos = variantContext.getStart(); + String vcfRef = variantContext.getReference().getBaseString(); + String vcfAlt = variantContext.getAlternateAllele(altAlleleId).getBaseString(); + return AllelePosition.trim(vcfPos, vcfRef, vcfAlt); + } + + private VariantAnnotations getVariantAnnotations(VariantContext variantContext, AllelePosition allelePosition) { + String contig = variantContext.getContig(); + return variantAnnotator.getVariantAnnotations(contig, allelePosition); + } + + private VariantEvaluation annotatedVariantEvaluation(VariantContext variantContext, int altAlleleId, AllelePosition allelePosition, VariantAnnotations variantAnnotations) { + int pos = allelePosition.getPos(); + String ref = allelePosition.getRef(); + String alt = allelePosition.getAlt(); + + int chr = variantAnnotations.getChr(); + VariantEffect variantEffect = variantAnnotations.getHighestImpactEffect(); + GenomeVariant genomeVariant = variantAnnotations.getGenomeVariant(); + //Attention! highestImpactAnnotation can be null + Annotation highestImpactAnnotation = variantAnnotations.getHighestImpactAnnotation(); + List annotations = buildTranscriptAnnotations(variantAnnotations.getAnnotations()); + + return VariantEvaluation.builder(chr, pos, ref, alt) + //HTSJDK derived data are only used for writing out the + //HTML (VariantEffectCounter) VCF/TSV-VARIANT formatted files + //can be removed from InheritanceModeAnalyser as Jannovar 0.18+ is not reliant on the VariantContext + //need most/all of the info in order to write it all out again. + //TODO: remove this direct dependency without it the RAM usage can be halved such that a SPARSE analysis of the POMP sample can be held comfortably in 8GB RAM + .variantContext(variantContext) + .altAlleleId(altAlleleId) + .numIndividuals(variantContext.getNSamples()) + //quality is the only value from the VCF file directly required for analysis + .quality(variantContext.getPhredScaledQual()) + //jannovar derived data + .chromosomeName(genomeVariant.getChrName()) + .isOffExome(variantEffect.isOffExome()) + .geneSymbol(buildGeneSymbol(highestImpactAnnotation)) + .geneId(buildGeneId(highestImpactAnnotation)) + .variantEffect(variantEffect) + .annotations(annotations) + .build(); + } + + /** + * A basic VariantEvaluation for an alternative allele described by the + * VariantContext. These positions will not be trimmed or annotated by + * Jannovar. This method is only provided for completeness so that users can + * have a list of variants which were not used in any analyses. + * + * @param variantContext + * @param altAlleleId + * @return + */ + private VariantEvaluation unAnnotatedVariantEvaluation(VariantContext variantContext, int altAlleleId, AllelePosition allelePosition) { + + int pos = allelePosition.getPos(); + String ref = allelePosition.getRef(); + String alt = allelePosition.getAlt(); + + String chromosomeName = variantContext.getContig(); + logger.trace("Building unannotated variant for {} {} {} {} - assigning to chromosome {}", chromosomeName, pos, ref, alt, UNKNOWN_CHROMOSOME); + return VariantEvaluation.builder(UNKNOWN_CHROMOSOME, pos, ref, alt) + .variantContext(variantContext) + .altAlleleId(altAlleleId) + .numIndividuals(variantContext.getNSamples()) + //quality is the only value from the VCF file directly required for analysis + .quality(variantContext.getPhredScaledQual()) + .chromosomeName(chromosomeName) + .build(); + } + + private List buildTranscriptAnnotations(List annotations) { + List transcriptAnnotations = new ArrayList<>(annotations.size()); + for (Annotation annotation : annotations) { + transcriptAnnotations.add(toTranscriptAnnotation(annotation)); + } + return transcriptAnnotations; + } + + private TranscriptAnnotation toTranscriptAnnotation(Annotation annotation) { + return TranscriptAnnotation.builder() + .variantEffect(annotation.getMostPathogenicVarType()) + .accession(getTranscriptAccession(annotation)) + .geneSymbol(buildGeneSymbol(annotation)) +// .hgvsGenomic(annotation.getGenomicNTChangeStr()) + .hgvsCdna(annotation.getCDSNTChangeStr()) + .hgvsProtein(annotation.getProteinChangeStr()) + .distanceFromNearestGene(getDistFromNearestGene(annotation)) + .build(); + } + + private String getTranscriptAccession(Annotation annotation) { + TranscriptModel transcriptModel = annotation.getTranscript(); + if (transcriptModel == null) { + return ""; + } + return transcriptModel.getAccession(); + } + + private int getDistFromNearestGene(Annotation annotation) { + + TranscriptModel tm = annotation.getTranscript(); + if (tm == null) { + return Integer.MIN_VALUE; + } + GenomeVariant change = annotation.getGenomeVariant(); + Set effects = annotation.getEffects(); + if (effects.contains(VariantEffect.INTERGENIC_VARIANT) || effects.contains(VariantEffect.UPSTREAM_GENE_VARIANT) || effects.contains(VariantEffect.DOWNSTREAM_GENE_VARIANT)) { + if (change.getGenomeInterval().isLeftOf(tm.getTXRegion().getGenomeBeginPos())) + return tm.getTXRegion().getGenomeBeginPos().differenceTo(change.getGenomeInterval().getGenomeEndPos()); + else + return change.getGenomeInterval().getGenomeBeginPos().differenceTo(tm.getTXRegion().getGenomeEndPos()); + } + + return Integer.MIN_VALUE; + } + + private int buildGeneId(Annotation annotation) { + if (annotation == null) { + return -1; + } + + final TranscriptModel transcriptModel = annotation.getTranscript(); + if (transcriptModel == null) { + return -1; + } + Map altGeneIds = transcriptModel.getAltGeneIDs(); + String entrezId = altGeneIds.getOrDefault("ENTREZ_ID", ""); + if (entrezId.isEmpty()) { + return -1; + } + // The gene ID is of the form "${NAMESPACE}${NUMERIC_ID}" where "NAMESPACE" is "ENTREZ" + // for UCSC. At this point, there is a hard dependency on using the UCSC database. + return Integer.parseInt(entrezId); + } + + private String buildGeneSymbol(Annotation annotation) { + if (annotation == null || annotation.getGeneSymbol() == null) { + return "."; + } else { + return annotation.getGeneSymbol(); + } + } + + /** + * Data class for tracking number of annotated variants + */ + private class VariantCounter { + final AtomicInteger variantRecords = new AtomicInteger(0); + final AtomicInteger unannotatedVariants = new AtomicInteger(0); + final AtomicInteger annotatedVariants = new AtomicInteger(0); + final Instant start = Instant.now(); + + Consumer countVariantContext() { + return variantContext -> variantRecords.incrementAndGet(); + } + + Consumer countAnnotatedVariant() { + return variantEvaluation -> { + if (variantEvaluation.hasAnnotations()) { + annotatedVariants.incrementAndGet(); + } else { + unannotatedVariants.incrementAndGet(); + } + }; + } + + void logCount() { + if (unannotatedVariants.get() > 0) { + logger.info("Processed {} variant records into {} single allele variants, {} are missing annotations, most likely due to non-numeric chromosome designations", variantRecords + .get(), annotatedVariants.get(), unannotatedVariants.get()); + } else { + logger.info("Processed {} variant records into {} single allele variants", variantRecords.get(), annotatedVariants + .get()); + } + Duration duration = Duration.between(start, Instant.now()); + long ms = duration.toMillis(); + logger.info("Variant annotation finished in {}m {}s {}ms ({} ms)", (ms / 1000) / 60 % 60, ms / 1000 % 60, ms % 1000, ms); + } + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/CaddDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/CaddDao.java new file mode 100644 index 000000000..93293eb18 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/CaddDao.java @@ -0,0 +1,115 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import htsjdk.tribble.readers.TabixReader; +import org.monarchinitiative.exomiser.core.model.AllelePosition; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.pathogenicity.CaddScore; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.stereotype.Component; + +import java.io.IOException; + +/** + * + * @author Jules Jacobsen + */ +@Component +public class CaddDao { + + private final Logger logger = LoggerFactory.getLogger(CaddDao.class); + + private final TabixDataSource caddInDelTabixDataSource; + private final TabixDataSource caddSnvTabixDataSource; + + @Autowired + public CaddDao(TabixDataSource caddInDelTabixDataSource, TabixDataSource caddSnvTabixDataSource) { + this.caddInDelTabixDataSource = caddInDelTabixDataSource; + this.caddSnvTabixDataSource = caddSnvTabixDataSource; + } + + @Cacheable(value = "cadd") + public PathogenicityData getPathogenicityData(Variant variant) { + return processResults(variant); + } + + PathogenicityData processResults(Variant variant) { + String chromosome = variant.getChromosomeName(); + String ref = variant.getRef(); + String alt = variant.getAlt(); + int start = variant.getPosition(); + if (AllelePosition.isSnv(ref, alt)) { + return getCaddPathogenicityData(caddSnvTabixDataSource, chromosome, start, ref, alt); + } + return getCaddPathogenicityData(caddInDelTabixDataSource, chromosome, start, ref, alt); + } + + private PathogenicityData getCaddPathogenicityData(TabixDataSource tabixDataSource, String chromosome, int start, String ref, String alt) { + try { + TabixReader.Iterator results = tabixDataSource.query(chromosome + ":" + start + "-" + start); + String line; + //there can be 0 - N results in this format: + //#Chrom Pos Ref Alt RawScore PHRED + //2 14962 C CA -0.138930 1.458 + //2 14962 C CAA -0.155009 1.356 + //2 14962 CA C 0.194173 4.618 + while ((line = results.next()) != null) { + String[] elements = line.split("\t"); + String caddRef = elements[2]; + String caddAlt = elements[3]; + if (caddRef.equals(ref) && caddAlt.equals(alt)) { + return makeCaddPathData(elements[5]); + } + } + } catch (IOException e) { + logger.error("Unable to read from CADD tabix file {}", tabixDataSource.getSource(), e); + } + return PathogenicityData.empty(); + } + + private PathogenicityData makeCaddPathData(String phredScaledCaddScore) { + CaddScore caddScore = parseCaddScore(phredScaledCaddScore); + return PathogenicityData.of(caddScore); + } + + private CaddScore parseCaddScore(String phredScaledCaddScore) { + float score = Float.parseFloat(phredScaledCaddScore); + float cadd = rescaleLogTenBasedScore(score); + return CaddScore.valueOf(cadd); + } + + /** + * rescales a log10-Phred based score to a value between 0 and 1 + */ + private float rescaleLogTenBasedScore(float caddRaw) { + return 1 - (float) Math.pow(10, -(caddRaw / 10)); + } +} \ No newline at end of file diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultFrequencyDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultFrequencyDao.java new file mode 100644 index 000000000..943d219fa --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultFrequencyDao.java @@ -0,0 +1,161 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import com.google.common.collect.Maps; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.stereotype.Repository; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.EnumMap; +import java.util.HashSet; +import java.util.Map; +import java.util.Map.Entry; +import java.util.Set; + +/** + * Default implementation of the FrequencyDao. Can be configured to use caching. + * + * @author Jules Jacobsen + */ +@Repository +public class DefaultFrequencyDao implements FrequencyDao { + + private final Logger logger = LoggerFactory.getLogger(DefaultFrequencyDao.class); + + private final DataSource dataSource; + + private final Map frequencySourceColumnMappings; + + @Autowired + public DefaultFrequencyDao(DataSource dataSource) { + this.dataSource = dataSource; + + Map frequencyMap = new EnumMap<>(FrequencySource.class); + frequencyMap.put(FrequencySource.THOUSAND_GENOMES, "dbSNPmaf"); + frequencyMap.put(FrequencySource.ESP_AFRICAN_AMERICAN, "espAAmaf"); + frequencyMap.put(FrequencySource.ESP_EUROPEAN_AMERICAN, "espEAmaf"); + frequencyMap.put(FrequencySource.ESP_ALL, "espAllmaf"); + frequencyMap.put(FrequencySource.EXAC_AFRICAN_INC_AFRICAN_AMERICAN, "exacAFRmaf"); + frequencyMap.put(FrequencySource.EXAC_AMERICAN, "exacAMRmaf"); + frequencyMap.put(FrequencySource.EXAC_EAST_ASIAN, "exacEASmaf"); + frequencyMap.put(FrequencySource.EXAC_FINNISH, "exacFINmaf"); + frequencyMap.put(FrequencySource.EXAC_NON_FINNISH_EUROPEAN, "exacNFEmaf"); + frequencyMap.put(FrequencySource.EXAC_SOUTH_ASIAN, "exacSASmaf"); + frequencyMap.put(FrequencySource.EXAC_OTHER, "exacOTHmaf"); + frequencySourceColumnMappings = Maps.immutableEnumMap(frequencyMap); + logger.debug("FrequencySource to columnLabel mappings: {}", frequencySourceColumnMappings); + } + + + @Cacheable(value = "frequency") + @Override + public FrequencyData getFrequencyData(Variant variant) { + + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement preparedFrequencyQuery = createPreparedStatement(connection, variant); + ResultSet rs = preparedFrequencyQuery.executeQuery()) { + + return processResults(rs); + + } catch (SQLException e) { + logger.error("Error executing frequency query: ", e); + } + return FrequencyData.empty(); + } + + private PreparedStatement createPreparedStatement(Connection connection, Variant variant) throws SQLException { + // Added order by clause as sometimes have multiple rows for the same position, ref and alt and first row may have no freq data + // Can remove if future versions of database remove these duplicated rows + + //TODO: optimise this query to remove the order by + String frequencyQuery = "SELECT rsid, dbSNPmaf, espEAmaf, espAAmaf, espAllmaf, exacAFRmaf, exacAMRmaf, exacEASmaf, exacFINmaf, exacNFEmaf, exacOTHmaf, exacSASmaf " + + "FROM frequency " + + "WHERE chromosome = ? " + + "AND position = ? " + + "AND ref = ? " + + "AND alt = ? " + + "ORDER BY dbsnpmaf desc, espeamaf desc, espaamaf desc, espallmaf desc "; + PreparedStatement ps = connection.prepareStatement(frequencyQuery); + + ps.setInt(1, variant.getChromosome()); + ps.setInt(2, variant.getPosition()); + ps.setString(3, variant.getRef()); + ps.setString(4, variant.getAlt()); + + return ps; + } + + private FrequencyData processResults(ResultSet rs) throws SQLException { + + RsId rsId = RsId.empty(); + Set frequencies = new HashSet<>(); + + if (rs.next()) { + rsId = makeRsId(rs); + frequencies = makeFrequencies(rs, frequencies); + } + + if (rsId.isEmpty() && frequencies.isEmpty()) { + return FrequencyData.empty(); + } + return FrequencyData.of(rsId, frequencies); + } + + private RsId makeRsId(ResultSet rs) throws SQLException { + int dbSNPid = rs.getInt("rsid"); + if (!rs.wasNull() && dbSNPid != 0) { + return RsId.valueOf(dbSNPid); + } + return RsId.empty(); + } + + private Set makeFrequencies(ResultSet rs, Set frequencies) throws SQLException { + for (Entry sourceColumnMapping : frequencySourceColumnMappings.entrySet()) { + FrequencySource source = sourceColumnMapping.getKey(); + String columnLabel = sourceColumnMapping.getValue(); + float freq = rs.getFloat(columnLabel); + if (!rs.wasNull() && freq != 0) { + frequencies.add(Frequency.valueOf(freq, source)); + } + } + return frequencies; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultPathogenicityDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultPathogenicityDao.java new file mode 100644 index 000000000..a0b0c2164 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultPathogenicityDao.java @@ -0,0 +1,175 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.pathogenicity.*; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.stereotype.Repository; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; + +/** + * + * @author Jules Jacobsen + */ +@Repository +public class DefaultPathogenicityDao implements PathogenicityDao { + + private final Logger logger = LoggerFactory.getLogger(DefaultPathogenicityDao.class); + + private final DataSource dataSource; + + @Autowired + public DefaultPathogenicityDao(DataSource dataSource) { + this.dataSource = dataSource; + } + + @Cacheable(value = "pathogenicity") + @Override + public PathogenicityData getPathogenicityData(Variant variant) { + + //if a variant is not classified as missense then we don't need to hit + //the database as we're going to assign it a constant pathogenicity score. + VariantEffect variantEffect = variant.getVariantEffect(); + if (variantEffect != VariantEffect.MISSENSE_VARIANT) { + return PathogenicityData.empty(); + } + + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement preparedStatement = createPreparedStatement(connection, variant); + ResultSet rs = preparedStatement.executeQuery()) { + + return processResults(rs, variant); + + } catch (SQLException e) { + logger.error("Error executing pathogenicity query: ", e); + } + return PathogenicityData.empty(); + } + + private PreparedStatement createPreparedStatement(Connection connection, Variant variant) throws SQLException { + String query = "SELECT " + + "sift," + + "polyphen," + + "mut_taster " + //As of 20150511 we're not going to use the CADD data from the database as it requires normalising and hasn't been + //using it will COMPLETELY FUBAR THE PATHOGENICITY FILTER, so don't add it back until it's normalised on a 0-1 scale. +// + "cadd " + + "FROM variant " + + "WHERE chromosome = ? " + + "AND position = ? " + + "AND ref = ? " + + "AND alt = ? "; + PreparedStatement ps = connection.prepareStatement(query); + + ps.setInt(1, variant.getChromosome()); + ps.setInt(2, variant.getPosition()); + ps.setString(3, variant.getRef()); + ps.setString(4, variant.getAlt()); + + return ps; + } + + PathogenicityData processResults(ResultSet rs, Variant variant) throws SQLException { + + SiftScore siftScore = null; + PolyPhenScore polyPhenScore = null; + MutationTasterScore mutationTasterScore = null; + + /* + * Switched db back to potentially having multiple rows per variant + * if alt transcripts leads to diff aa changes and pathogenicities. + * In future if know which transcript is more likely in the disease + * tissue can use the most appropriate row but for now take max + */ + while (rs.next()) { + siftScore = getBestSiftScore(rs, siftScore); + polyPhenScore = getBestPolyPhenScore(rs, polyPhenScore); + mutationTasterScore = getBestMutationTasterScore(rs, mutationTasterScore); + } + + return makePathogenicityData(siftScore, polyPhenScore, mutationTasterScore); + + } + + private PathogenicityData makePathogenicityData(SiftScore siftScore, PolyPhenScore polyPhenScore, MutationTasterScore mutationTasterScore) { + if (siftScore == null && polyPhenScore == null && mutationTasterScore == null) { + return PathogenicityData.empty(); + } + return PathogenicityData.of(polyPhenScore, mutationTasterScore, siftScore); + } + + private SiftScore getBestSiftScore(ResultSet rs, SiftScore score) throws SQLException { + float rowVal = rs.getFloat("sift"); + if (!rs.wasNull()) { + if (score == null || rowVal < score.getScore()) { + return SiftScore.valueOf(rowVal); + } + } + return score; + } + + private PolyPhenScore getBestPolyPhenScore(ResultSet rs, PolyPhenScore score) throws SQLException { + float rowVal = rs.getFloat("polyphen"); + if (!rs.wasNull()) { + if (score == null || rowVal > score.getScore()) { + return PolyPhenScore.valueOf(rowVal); + } + } + return score; + } + + private MutationTasterScore getBestMutationTasterScore(ResultSet rs, MutationTasterScore score) throws SQLException { + float rowVal = rs.getFloat("mut_taster"); + if (!rs.wasNull()) { + if (score == null || rowVal > score.getScore()) { + return MutationTasterScore.valueOf(rowVal); + } + } + return score; + } + + private CaddScore getBestCaddScore(ResultSet rs, CaddScore score) throws SQLException { + float rowVal = rs.getFloat("cadd"); + if (!rs.wasNull()) { + if (score == null || rowVal > score.getScore()) { + return CaddScore.valueOf(rowVal); + } + } + return score; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/ErrorThrowingTabixDataSource.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/ErrorThrowingTabixDataSource.java new file mode 100644 index 000000000..ddbfd4776 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/ErrorThrowingTabixDataSource.java @@ -0,0 +1,58 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome.dao; + +import htsjdk.tribble.readers.TabixReader; + +/** + * Special implementation of the TabixDataSource to throw an error if called, but the datasource has not been configured + * in the application. + * + * @author Jules Jacobsen + */ +public class ErrorThrowingTabixDataSource implements TabixDataSource { + + private final String message; + + public ErrorThrowingTabixDataSource(String message) { + this.message = message; + } + + @Override + public TabixReader.Iterator query(String query) { + throw new IllegalArgumentException(message); + } + + @Override + public TabixReader.Iterator query(String chromosome, int start, int end) { + throw new IllegalArgumentException(message); + } + + @Override + public void close() { + //empty implementation + } + + @Override + public String getSource() { + return "No source"; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/FrequencyDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/FrequencyDao.java new file mode 100644 index 000000000..dd761463d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/FrequencyDao.java @@ -0,0 +1,39 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; + +/** + * + * @author Jules Jacobsen + */ +public interface FrequencyDao { + + FrequencyData getFrequencyData(Variant variant); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/LocalFrequencyDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/LocalFrequencyDao.java new file mode 100644 index 000000000..89cadeda4 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/LocalFrequencyDao.java @@ -0,0 +1,97 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome.dao; + +import htsjdk.tribble.readers.TabixReader; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.stereotype.Component; + +import java.io.IOException; + +/** + * @author Jules Jacobsen + */ +@Component +public class LocalFrequencyDao implements FrequencyDao { + + private final Logger logger = LoggerFactory.getLogger(LocalFrequencyDao.class); + + private final TabixDataSource tabixDataSource; + + @Autowired + public LocalFrequencyDao(TabixDataSource localFrequencyTabixDataSource) { + this.tabixDataSource = localFrequencyTabixDataSource; + } + + @Cacheable(value = "local") + @Override + public FrequencyData getFrequencyData(Variant variant) { + return processResults(variant); + } + + FrequencyData processResults(Variant variant) { + String chromosome = variant.getChromosomeName(); + String ref = variant.getRef(); + String alt = variant.getAlt(); + int start = variant.getPosition(); + + return getPositionFrequencyData(chromosome, start, ref, alt); + } + + private FrequencyData getPositionFrequencyData(String chromosome, int start, String ref, String alt) { + //Local frequency file defined as tab-delimited lines in 'VCF-lite' format: + //chr pos ref alt freq(%) + //1 12345 A T 23.0 (an A->T SNP on chr1 at position 12345 with frequency of 23.0%) + //1 12345 A TG 0.01 (an A->TG insertion on chr1 at position 12345 with frequency of 0.01%) + //note in the usual VCF format these would be on a single line + //1 12345 AT G 0.02 (an AT->G deletion on chr1 at position 12345 with frequency of 0.02%) + //1 12345 T . 0.03 (an T->. monomorphic site (no alt allele) on chr1 at position 12345 with frequency of 0.03%) + try { + TabixReader.Iterator results = tabixDataSource.query(chromosome + ":" + start + "-" + start); + String line; + while ((line = results.next()) != null) { + String[] elements = line.split("\t"); + String refField = elements[2]; + String altField = elements[3]; + if (refField.equals(ref) && altField.equals(alt)) { + return parseLocalFrequency(elements[4]); + } + } + } catch (IOException e) { + logger.error("Unable to read from local frequency tabix file {}", tabixDataSource.getSource(), e); + } + return FrequencyData.empty(); + } + + private FrequencyData parseLocalFrequency(String frequencyInPercentField) { + float value = Float.parseFloat(frequencyInPercentField); + Frequency localFreq = Frequency.valueOf(value, FrequencySource.LOCAL); + return FrequencyData.of(RsId.empty(), localFreq); + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/PathogenicityDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/PathogenicityDao.java new file mode 100644 index 000000000..40700e2f9 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/PathogenicityDao.java @@ -0,0 +1,39 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; + +/** + * + * @author Jules Jacobsen + */ +public interface PathogenicityDao { + + PathogenicityData getPathogenicityData(Variant variant); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/RegulatoryFeatureDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/RegulatoryFeatureDao.java new file mode 100644 index 000000000..c8850167c --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/RegulatoryFeatureDao.java @@ -0,0 +1,111 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import org.monarchinitiative.exomiser.core.model.RegulatoryFeature; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Repository; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.ArrayList; +import java.util.Collections; +import java.util.List; + +/** + * + * @author Jules Jacobsen + */ +@Repository +public class RegulatoryFeatureDao { + + private final Logger logger = LoggerFactory.getLogger(RegulatoryFeatureDao.class); + + private final DataSource dataSource; + + @Autowired + public RegulatoryFeatureDao(DataSource dataSource) { + this.dataSource = dataSource; + } + + public List getRegulatoryFeatures() { + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement preparedStatement = connection.prepareStatement("select CHROMOSOME as chr, START as start, \"end\" as end, FEATURE_TYPE as feature_type from REGULATORY_REGIONS"); + ResultSet rs = preparedStatement.executeQuery()) { + + return processRegulatoryFeatureResults(rs); + + } catch (SQLException e) { + logger.error("Error executing regulatory feature query: ", e); + } + return Collections.emptyList(); + } + + private List processRegulatoryFeatureResults(ResultSet rs) throws SQLException { + List regulatoryFeatures = new ArrayList<>(); + while (rs.next()) { + int chr = rs.getInt("chr"); + int start = rs.getInt("start"); + int end = rs.getInt("end"); + String featureType = rs.getString("feature_type"); + RegulatoryFeature.FeatureType type = convertToFeatureType(featureType); + if (type != RegulatoryFeature.FeatureType.UNKNOWN) { + RegulatoryFeature regulatoryFeature = new RegulatoryFeature(chr, start, end, type); + regulatoryFeatures.add(regulatoryFeature); + } + } + return regulatoryFeatures; + } + + //TODO: Jannovar VariantEffect doesn't capture these well + //TODO: should these also be combined with the TADs? CTCF binding sites can act as insulators, enhancers can have long-range effects within a TAD, promoters are shorter range (to my knowledge), open chromatin has what effect on expression? + private RegulatoryFeature.FeatureType convertToFeatureType(String featureType) { + switch(featureType) { + case "Enhancer": + return RegulatoryFeature.FeatureType.ENHANCER; + case "TF binding site": + return RegulatoryFeature.FeatureType.TF_BINDING_SITE; + case "Promoter": + return RegulatoryFeature.FeatureType.PROMOTER; + case "Promoter Flanking Region": + return RegulatoryFeature.FeatureType.PROMOTER_FLANKING_REGION; + case "CTCF Binding Site": + return RegulatoryFeature.FeatureType.CTCF_BINDING_SITE; + case "Open chromatin": + return RegulatoryFeature.FeatureType.OPEN_CHROMATIN; + case "FANTOM permissive": + return RegulatoryFeature.FeatureType.FANTOM_PERMISSIVE; + default: + return RegulatoryFeature.FeatureType.UNKNOWN; + } + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/RemmDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/RemmDao.java new file mode 100644 index 000000000..1b9f5cd74 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/RemmDao.java @@ -0,0 +1,127 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import htsjdk.tribble.readers.TabixReader; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.RemmScore; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.stereotype.Component; + +import java.io.IOException; + +/** + * + * @author Jules Jacobsen + */ +@Component +public class RemmDao { + + private final Logger logger = LoggerFactory.getLogger(RemmDao.class); + + private final TabixDataSource remmTabixDataSource; + + @Autowired + public RemmDao(TabixDataSource remmTabixDataSource) { + this.remmTabixDataSource = remmTabixDataSource; + } + + @Cacheable(value = "remm") + public PathogenicityData getPathogenicityData(Variant variant) { + // REMM has not been trained on missense variants so skip these + if (variant.getVariantEffect() == VariantEffect.MISSENSE_VARIANT) { + return PathogenicityData.empty(); + } + return processResults(variant); + } + + private PathogenicityData processResults(Variant variant) { + String chromosome = variant.getChromosomeName(); + int start = variant.getPosition(); + int end = calculateEndPosition(variant); + return getRemmData(chromosome, start, end); + } + + private int calculateEndPosition(Variant variant) { + int pos = variant.getPosition(); + + //we're doing this here in order not to have to count all this each time we need the value + int refLength = variant.getRef().length(); + int altLength = variant.getAlt().length(); + //What about MNV? + if (refLength == altLength) { + return pos; + } + //these end positions are calculated according to recommendation by Max and Peter who produced the REMM score + //don't change this unless they say. + if (isDeletion(refLength, altLength)) { + // test all deleted bases (being 1-based we need to correct the length) + return pos + refLength - 1; + } else if (isInsertion(refLength, altLength)) { + // test bases either side of insertion + return pos + 1; + } + return pos; + } + + private static boolean isDeletion(int refLength, int altLength) { + return refLength > altLength; + } + + private static boolean isInsertion(int refLength, int altLength) { + return refLength < altLength; + } + + private PathogenicityData getRemmData(String chromosome, int start, int end) { + try { + float remm = Float.NaN; + String line; +// logger.info("Running tabix with " + chromosome + ":" + start + "-" + end); + TabixReader.Iterator results = remmTabixDataSource.query(chromosome + ":" + start + "-" + end); + while ((line = results.next()) != null) { + String[] elements = line.split("\t"); + if (Float.isNaN(remm)) { + remm = Float.parseFloat(elements[2]); + } else { + remm = Math.max(remm, Float.parseFloat(elements[2])); + } + } + //logger.info("Final score " + remm); + if (!Float.isNaN(remm)) { + return PathogenicityData.of(RemmScore.valueOf(remm)); + } + } catch (IOException e) { + logger.error("Unable to read from REMM tabix file {}", remmTabixDataSource.getSource(), e); + } + return PathogenicityData.empty(); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TabixDataSource.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TabixDataSource.java new file mode 100644 index 000000000..47652974d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TabixDataSource.java @@ -0,0 +1,42 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome.dao; + +import htsjdk.tribble.readers.TabixReader; + +import java.io.Closeable; + +/** + * Abstraction for querying Tabix files. The HTSJK TabixReader is not easy to test and provides no interfaceor + * alternate implementations. This partially mitigates this issue as the Tabix.Iterator does not implement + * java.util.Iterator. + * + * @author Jules Jacobsen + */ +public interface TabixDataSource extends Closeable { + + public TabixReader.Iterator query(String query); + + public TabixReader.Iterator query(String chromosome, int start, int end); + + public String getSource(); + +} \ No newline at end of file diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TabixReaderAdaptor.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TabixReaderAdaptor.java new file mode 100644 index 000000000..17c3884b7 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TabixReaderAdaptor.java @@ -0,0 +1,57 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome.dao; + +import htsjdk.tribble.readers.TabixReader; + +/** + * Wrapper for an HTSJDK TabixReader. + * + * @author Jules Jacobsen + */ +public class TabixReaderAdaptor implements TabixDataSource { + + private final TabixReader tabixReader; + + public TabixReaderAdaptor(TabixReader tabixReader) { + this.tabixReader = tabixReader; + } + + @Override + public TabixReader.Iterator query(String query) { + return tabixReader.query(query); + } + + @Override + public TabixReader.Iterator query(String chromosome, int start, int end) { + return tabixReader.query(chromosome, start, end); + } + + @Override + public void close() { + tabixReader.close(); + } + + @Override + public String getSource() { + return tabixReader.getSource(); + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TadDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TadDao.java new file mode 100644 index 000000000..7f10c7a5f --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/genome/dao/TadDao.java @@ -0,0 +1,107 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Repository; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.*; + +/** + * @author Jules Jacobsen + */ +@Repository +public class TadDao { + + private final Logger logger = LoggerFactory.getLogger(TadDao.class); + + private final DataSource dataSource; + + @Autowired + public TadDao(DataSource dataSource) { + this.dataSource = dataSource; + } + + + public List getAllTads() { + try (Connection connection = dataSource.getConnection(); + PreparedStatement preparedStatement = connection.prepareStatement("select CHROMOSOME as chr, START as start, \"end\" as end, ENTREZID as geneId, SYMBOL as geneSymbol from tad"); + ResultSet rs = preparedStatement.executeQuery()) { + return createTads(rs); + + } catch (SQLException e) { + logger.error("Error executing topologically associated domain query: ", e); + } + return Collections.emptyList(); + } + + private List createTads(ResultSet rs) throws SQLException { + List tads = new ArrayList<>(); + int chr = 0; + int start = 0; + int end = 0; + Map geneIdentifiers = new LinkedHashMap<>(); + while (rs.next()) { + int currentChr = rs.getInt("chr"); + int currentStart = rs.getInt("start"); + int currentEnd = rs.getInt("end"); + String geneSymbol = rs.getString("geneSymbol"); + Integer geneId = rs.getInt("geneId"); + + //first row + if (chr == 0 && start == 0 && end == 0) { + chr = currentChr; + start = currentStart; + end = currentEnd; + geneIdentifiers.put(geneSymbol, geneId); + continue; + } + //TADs probably don't overlap, but this is biology so at least one probably will. + if (currentChr != chr || currentStart != start || currentEnd != end) { + TopologicalDomain previousTad = new TopologicalDomain(chr, start, end, geneIdentifiers); + tads.add(previousTad); + geneIdentifiers = new LinkedHashMap<>(); + } + chr = currentChr; + start = currentStart; + end = currentEnd; + geneIdentifiers.put(geneSymbol, geneId); + } + TopologicalDomain finalTad = new TopologicalDomain(chr, start, end, geneIdentifiers); + tads.add(finalTad); + + return tads; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/AllelePosition.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/AllelePosition.java new file mode 100644 index 000000000..657bc42dc --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/AllelePosition.java @@ -0,0 +1,175 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import java.util.Objects; + +/** + * Class for computing and holding minimised single allele variant coordinates. Normalisation is not complete in that + * it will not left align the variants, but it will right then left trim and adjust the position accordingly. The coordinates + * are expected to follow the VCF spec i.e. use 1-based, inclusive positions. + *

+ * It will not accept multiple allele VCF strings and it will not split MNV into SNP. + *

+ * Minimisation follows the specification detailed here: http://genome.sph.umich.edu/wiki/Variant_Normalization + * and as discussed here: https://macarthurlab.org/2014/04/28/converting-genetic-variants-to-their-minimal-representation + *

+ * A variant is considered minimised if: + * 1. it has no common nucleotides on the left or right side + * 2. each allele does not end with the same type of nucleotide, or the shortest allele has length 1 + * + * @author Jules Jacobsen + */ +public class AllelePosition { + + private final int pos; + private final String ref; + private final String alt; + + /** + * @param pos + * @param ref + * @param alt + * @return an exact representation of the input coordinates. + */ + public static AllelePosition of(int pos, String ref, String alt) { + Objects.requireNonNull(ref, "REF string cannot be null"); + Objects.requireNonNull(alt, "ALT string cannot be null"); + return new AllelePosition(pos, ref, alt); + } + + /** + * Trims the right, then left side of the given variant allele. + * + * @param pos + * @param ref + * @param alt + * @return a minimised representation of the input coordinates. + */ + public static AllelePosition trim(int pos, String ref, String alt) { + Objects.requireNonNull(ref, "REF string cannot be null"); + Objects.requireNonNull(alt, "ALT string cannot be null"); + + if (cantTrim(ref, alt)) { + return new AllelePosition(pos, ref, alt); + } + + // Can't do left alignment as have no reference seq and are assuming this has happened already. + // Therefore check the sequence is first right trimmed, then left trimmed as per the wiki link above. + if (needsRightTrim(ref, alt)) { + int rightIdx = ref.length(); + int diff = ref.length() - alt.length(); + // scan from right to left, ensure right index > 1 so as not to fall off the left end + while (rightIdx > 1 && rightIdx - diff > 0 && ref.charAt(rightIdx - 1) == alt.charAt(rightIdx - 1 - diff)) { + rightIdx--; + } + + ref = ref.substring(0, rightIdx); + alt = alt.substring(0, rightIdx - diff); + } + + if (needsLeftTrim(ref, alt)) { + int leftIdx = 0; + // scan from left to right + while (leftIdx < ref.length() && leftIdx < alt.length() && ref.charAt(leftIdx) == alt.charAt(leftIdx)) { + leftIdx++; + } + // correct index so as not to fall off the right end + if (leftIdx > 0 && leftIdx == ref.length() || leftIdx == alt.length()) { + leftIdx -= 1; + } + pos += leftIdx; + ref = ref.substring(leftIdx); + alt = alt.substring(leftIdx); + } + + return new AllelePosition(pos, ref, alt); + } + + public static boolean isSnv(String ref, String alt) { + return ref.length() == 1 && alt.length() == 1; + } + + public static boolean isDeletion(String ref, String alt) { + return ref.length() > alt.length(); + } + + public static boolean isInsertion(String ref, String alt) { + return ref.length() < alt.length(); + } + + private static boolean cantTrim(String ref, String alt) { + return ref.length() == 1 || alt.length() == 1; + } + + private static boolean needsRightTrim(String ref, String alt) { + int refLength = ref.length(); + int altLength = alt.length(); + return refLength > 1 && altLength > 1 && ref.charAt(refLength - 1) == alt.charAt(altLength - 1); + } + + private static boolean needsLeftTrim(String ref, String alt) { + return ref.length() > 1 && alt.length() > 1 && ref.charAt(0) == alt.charAt(0); + } + + private AllelePosition(int pos, String ref, String alt) { + this.pos = pos; + this.ref = ref; + this.alt = alt; + } + + public int getPos() { + return pos; + } + + public String getRef() { + return ref; + } + + public String getAlt() { + return alt; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + AllelePosition that = (AllelePosition) o; + return pos == that.pos && + Objects.equals(ref, that.ref) && + Objects.equals(alt, that.alt); + } + + @Override + public int hashCode() { + return Objects.hash(pos, ref, alt); + } + + @Override + public String toString() { + return "AllelePosition{" + + "pos=" + pos + + ", ref='" + ref + '\'' + + ", alt='" + alt + '\'' + + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/ChromosomalRegion.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/ChromosomalRegion.java new file mode 100644 index 000000000..64a792f94 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/ChromosomalRegion.java @@ -0,0 +1,33 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +/** + * @author Jules Jacobsen + */ +public interface ChromosomalRegion { + + int getChromosome(); + + int getStart(); + + int getEnd(); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/FilterStatus.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/FilterStatus.java new file mode 100644 index 000000000..3781ba662 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/FilterStatus.java @@ -0,0 +1,36 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model; + +/** + * Status of a Filterable - has it been filtered? Did it pass or fail? + * + * @author Jules Jacobsen + */ +public enum FilterStatus { + + UNFILTERED, FAILED, PASSED +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Filterable.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Filterable.java new file mode 100644 index 000000000..1d1ba4c3e --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Filterable.java @@ -0,0 +1,44 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.model; + +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; + +/** + * + * @author Jules Jacobsen + */ +public interface Filterable { + + boolean passedFilters(); + + boolean passedFilter(FilterType filterType); + + boolean addFilterResult(FilterResult filterResult); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Gene.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Gene.java new file mode 100644 index 000000000..38f267733 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Gene.java @@ -0,0 +1,506 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import com.fasterxml.jackson.annotation.JsonPropertyOrder; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.util.*; +import java.util.function.Predicate; + +import static java.util.stream.Collectors.toList; + +/** + * This class represents a Gene in which {@link Variant} + * objects have been identified by exome sequencing. Note that this class stores + * information about observed variants and quality scores etc. In contrast, the + * class {@link de.charite.compbio.jannovar.reference.TranscriptModel} stores + * information from UCSC about all genes, irrespective of whether we see a + * variant in the gene by exome sequencing. Therefore, the program uses + * information from {@link de.charite.compbio.jannovar.reference.TranscriptModel TranscriptModel} + * object to annotate variants found by exome sequencing, and stores the results + * of that annotation in {@link Variant Variant} objects. Objects + * of this class have a list of Variant objects, one for each variant observed + * in the exome. Additionally, the Gene objects get prioritized for their + * biomedical relevance to the disease in question, and each such prioritization + * results in an + * {@link PriorityResult PriorityResult} + * object. + *

+ * There are additionally some prioritization procedures that only can be + * performed on genes (and not on the individual variants). For instance, there + * are certain genes such as the Mucins or the Olfactory receptor genes that are + * often found to have variants in WES data but are known not to be the relevant + * disease genes. Additionally, filtering for autosomal recessive or dominant + * patterns in the data is done with this class. This kind of prioritization is + * done by classes that implement + * {@link Prioritiser Prioritiser}. + * Recently, the ability to downweight genes with too many variants (now + * hardcoded to 5) was added). + * + * @author Peter Robinson + * @author Jules Jacobsen + * @version 0.21 (16 January, 2013) + */ +@JsonPropertyOrder({"geneSymbol", "entrezGeneId", "combinedScore", "variantScore", "priorityScore", "inheritanceModes", "variantEvaluations"}) +public class Gene implements Comparable, Filterable, Inheritable { + + /** + * A list of all of the variants that affect this gene. + */ + private final List variantEvaluations = new ArrayList<>(); + + private final Set failedFilterTypes = new LinkedHashSet<>(); + private final Set passedFilterTypes = new LinkedHashSet<>(); + private final Map filterResults = new EnumMap<>(FilterType.class); + + /** + * A priority score between 0 (irrelevant) and an arbitrary number (highest + * prediction for a disease gene) reflecting the predicted relevance of this + * gene for the disease under study by exome sequencing. + */ + private float priorityScore = 0f; + + /** + * A score representing the combined pathogenicity predictions for the + * {@link Variant} objects associated with this gene. + */ + private float variantScore = 0f; + /** + * A score representing the combined filter and priority scores. + */ + private float combinedScore = 0f; + + private final Map priorityResultsMap = new EnumMap<>(PriorityType.class); + private Set inheritanceModes = EnumSet.noneOf(ModeOfInheritance.class); + + private final GeneIdentifier geneIdentifier; + + private final String geneSymbol; + private final int entrezGeneId; + + /** + * Preferred constructor. Given the {@link GeneIdentifier} contains all the data it can + * + * @param geneIdentifier + */ + public Gene(GeneIdentifier geneIdentifier) { + this.geneIdentifier = Objects.requireNonNull(geneIdentifier, "GeneIdentifier for a Gene cannot be null"); + if (geneIdentifier.getGeneSymbol().isEmpty()) { + //we can tolerate empty gene identifiers as sometimes there is none - GeneIdentifier will supply a -1 code + throw new IllegalArgumentException("GeneIdentifier geneSymbol cannot be empty for a Gene"); + } + + this.geneSymbol = geneIdentifier.getGeneSymbol(); + this.entrezGeneId = geneIdentifier.getEntrezIdAsInteger(); + } + + /** + * Alternate constructor. Construct the gene by providing a gene symbol and Entrez id. Internally this will create a + * new {@link GeneIdentifier}, but this will not contain the alternate database identifiers (ENSEMBL, HGNC, UCSC) so + * may result in odd behaviour in the reports. For this reason this constructor should be regarded as a convenient + * 'hack' for testing purposes. + * + * @param geneSymbol + * @param geneId + */ + public Gene(String geneSymbol, int geneId) { + this(GeneIdentifier.builder().geneId(String.valueOf(geneId)).geneSymbol(geneSymbol).entrezId(String.valueOf(geneId)).build()); + } + + /** + * Note that currently, the gene symbols are associated with the Variants. + * Probably it would be more natural to associate that with a field of this + * Gene object. For now, leave it as be, and return "-" if this gene has no + * {@link Variant} objects. + * + * @return the symbol associated with this gene (extracted from one of the + * Variant objects) + */ + public String getGeneSymbol() { + return geneIdentifier.getGeneSymbol(); + } + + public String getGeneId() { + return geneIdentifier.getGeneId(); + } + + public GeneIdentifier getGeneIdentifier() { + return geneIdentifier; + } + + /** + * @return the NCBI Entrez Gene ID associated with this gene (extracted from + * one of the Variant objects) + */ + public int getEntrezGeneID() { + return geneIdentifier.getEntrezIdAsInteger(); + } + + + /** + * @return the number of {@link Variant} associated with this gene. + */ + public int getNumberOfVariants() { + return variantEvaluations.size(); + } + + /** + * Downrank gene because it has a large numbers of variants (under the + * assumption that such genes are unlikely to be be true disease genes, + * rather, by chance say 2 of 20 variants are score as highly pathogenic by + * polyphen, leading to a false positive call. This method downweights the + * {@link #variantScore} of this gene, which is the aggregate score for the + * variants. + * + * @param threshold Downweighting occurs for variants that have this number + * or more variants. + */ +//commented out as this was unused - use the GeneScorer for this sort of function. +// public void downWeightGeneWithManyVariants(int threshold) { +// if (this.variantList.size() < threshold) { +// return; +// } +// // Start with downweighting factor of 5% +// // For every additional variant, add half again to the factor +// int s = this.variantList.size(); +// float factor = 0.05f; +// float downweight = 0f; +// while (s > threshold) { +// downweight += factor; +// factor *= 1.5; +// s--; +// } +// if (downweight > 1f) { +// downweight = 1f; +// } +// this.variantScore = this.variantScore * (1f - downweight); +// /* +// * filterscore is now at least zero +// */ +// +// } + + public boolean hasVariants() { + return !variantEvaluations.isEmpty(); + } + + /** + * This function adds additional variants to the current gene. The variants + * have been identified by parsing the VCF file. + * + * @param var A Variant affecting the current gene. + */ + public final void addVariant(VariantEvaluation var) { + addGeneFilterResultsToVariant(var); + variantEvaluations.add(var); + } + + private void addGeneFilterResultsToVariant(VariantEvaluation var) { + filterResults.values().stream() + .filter(isNotInheritanceFilterResult()) + .forEach(var::addFilterResult); + } + + private Predicate isNotInheritanceFilterResult() { + return filterResult -> filterResult.getFilterType() != FilterType.INHERITANCE_FILTER; + } + + /** + * @return A list of all variants in the VCF file that affect this gene. + */ + public List getVariantEvaluations() { + return variantEvaluations; + } + + @JsonIgnore + public List getPassedVariantEvaluations() { + return variantEvaluations.stream().filter(VariantEvaluation::passedFilters).collect(toList()); + } + + @Override + public Set getInheritanceModes() { + return inheritanceModes; + } + + @Override + public void setInheritanceModes(Set inheritanceModes) { + this.inheritanceModes = inheritanceModes; + } + + /** + * @param modeOfInheritance + * @return true if the variants for this gene are compatible with the given + * {@code ModeOfInheritance} otherwise false. + */ + @Override + public boolean isCompatibleWith(ModeOfInheritance modeOfInheritance) { + return inheritanceModes.contains(modeOfInheritance); + } + + /** + * @return true if the variants for this gene are compatible with autosomal + * recessive inheritance, otherwise false. + */ + @JsonIgnore + public boolean isCompatibleWithRecessive() { + return inheritanceModes.contains(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + } + + /** + * @return true if the variants for this gene are compatible with autosomal + * dominant inheritance, otherwise false. + */ + @JsonIgnore + public boolean isCompatibleWithDominant() { + return inheritanceModes.contains(ModeOfInheritance.AUTOSOMAL_DOMINANT); + } + + /** + * @return true if the variants for this gene are consistent with X + * chromosomal inheritance, otherwise false. + */ + @JsonIgnore + public boolean isConsistentWithX() { + return inheritanceModes.contains(ModeOfInheritance.X_RECESSIVE); + } + + /** + * @return true if the gene is X chromosomal, otherwise false. + */ + @JsonIgnore + public boolean isXChromosomal() { + if (variantEvaluations.isEmpty()) { + return false; + } + Variant ve = variantEvaluations.get(0); + return ve.isXChromosomal(); + } + + @JsonIgnore + public boolean isYChromosomal() { + if (variantEvaluations.isEmpty()) { + return false; + } + Variant ve = variantEvaluations.get(0); + return ve.isYChromosomal(); + } + + /** + * @param priorityResult Result of a prioritization algorithm + */ + public void addPriorityResult(PriorityResult priorityResult) { + priorityResultsMap.put(priorityResult.getPriorityType(), priorityResult); + } + + /** + * @param type {@code PriorityType} representing the priority type + * @return The result applied by that {@code Priority}. + */ + public PriorityResult getPriorityResult(PriorityType type) { + return priorityResultsMap.get(type); + } + + /** + * @return the map of {@code PriorityResult} objects that represent the + * result of filtering + */ + public Map getPriorityResults() { + return priorityResultsMap; + } + + /** + * Returns the priority score of this gene based on the relevance of the + * gene as determined by a prioritiser. + * + * @return a score that will be used to rank the gene. + */ + public float getPriorityScore() { + return priorityScore; + } + + /** + * Sets the priority score for the gene. + * + * @param score + */ + public void setPriorityScore(float score) { + priorityScore = score; + } + + /** + * @return a variant score that will be used to rank the gene. + */ + public float getVariantScore() { + return this.variantScore; + } + + /** + * Set the variant score for the gene. + * + * @param variantScore + */ + public void setVariantScore(float variantScore) { + this.variantScore = variantScore; + } + + /** + * Return the combined score of this gene based on the relevance of the gene + * (priorityScore) and the predicted effects of the variants (variantScore). + * + * @return a combined score that will be used to rank the gene. + */ + public float getCombinedScore() { + return combinedScore; + } + + public void setCombinedScore(float combinedScore) { + this.combinedScore = combinedScore; + } + + /** + * Returns true if the gene has passed all filters and at least one Variant + * associated with the Gene has also passed all filters. Will also return + * true if the gene has no variants associated with it. + */ + @Override + public boolean passedFilters() { + if (isUnfiltered()) { + return true; + } + return failedFilterTypes.isEmpty() && atLeastOneVariantPassedFilters(); + } + + private boolean isUnfiltered() { + return failedFilterTypes.isEmpty() && variantEvaluations.isEmpty(); + } + + private boolean atLeastOneVariantPassedFilters() { + for (VariantEvaluation variantEvaluation : variantEvaluations) { + if (variantEvaluation.passedFilters()) { + return true; + } + } + return false; + } + + @Override + public boolean passedFilter(FilterType filterType) { + if (!failedFilterTypes.contains(filterType) && passedFilterTypes.contains(filterType)) { + return true; + } + return atLeastOneVariantPassedFilter(filterType); + } + + private boolean atLeastOneVariantPassedFilter(FilterType filterType) { + for (VariantEvaluation variantEvaluation : variantEvaluations) { + if (variantEvaluation.passedFilter(filterType)) { + return true; + } + } + return false; + } + + private FilterStatus getFilterStatus() { + if (passedFilters()) { + return FilterStatus.PASSED; + } + return FilterStatus.FAILED; + } + + @Override + public boolean addFilterResult(FilterResult filterResult) { + filterResults.put(filterResult.getFilterType(), filterResult); + if (filterResult.passed()) { + return addPassedFilterResult(filterResult); + } + return addFailedFilterResult(filterResult); + } + + private boolean addPassedFilterResult(FilterResult filterResult) { + passedFilterTypes.add(filterResult.getFilterType()); + return true; + } + + private boolean addFailedFilterResult(FilterResult filterResult) { + failedFilterTypes.add(filterResult.getFilterType()); + return false; + } + + @Override + public int hashCode() { + int hash = 3; + hash = 97 * hash + Objects.hashCode(this.geneSymbol); + hash = 97 * hash + this.entrezGeneId; + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final Gene other = (Gene) obj; + if (!Objects.equals(this.geneSymbol, other.geneSymbol)) { + return false; + } + return this.entrezGeneId == other.entrezGeneId; + } + + /** + * Sort this gene based on priority and filter score. This function + * satisfies the Interface {@code Comparable}. + * + * @param other + */ + @Override + public int compareTo(Gene other) { + float thisScore = this.combinedScore; + float otherScore = other.combinedScore; + if (thisScore < otherScore) { + return 1; + } + if (thisScore > otherScore) { + return -1; + } + //if the scores are equal then return an alphabeticised list + if (thisScore == otherScore) { + return geneSymbol.compareTo(other.geneSymbol); + } + return 0; + } + + + @Override + public String toString() { + return String.format("%s entrezId=%d compatibleWith=%s variantScore=%.3f priorityScore=%.3f combinedScore=%.3f variants=%d filterStatus=%s failedFilters=%s passedFilters=%s", geneSymbol, entrezGeneId, inheritanceModes, variantScore, priorityScore, combinedScore, variantEvaluations.size(), getFilterStatus(), failedFilterTypes, passedFilterTypes); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/GeneIdentifier.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/GeneIdentifier.java new file mode 100644 index 000000000..8f01307c9 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/GeneIdentifier.java @@ -0,0 +1,199 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import java.util.Objects; + +/** + * This is a bit of a hybrid concept - can represent any geneId and corresponding symbol, but also contains fields for linking explicitly to human + * gene databases such as ENSEMBL, ENTREZ gene and UCSC and the HGNC identifiers. This could for instance represent a mouse gene - human ortholog pair + * or a human gene using one of the mapped coordinate systems as an implicit default via the getGeneId and getGeneSymbol methods. + * + * @author Jules Jacobsen + */ +public class GeneIdentifier { + + public static final String EMPTY_FIELD = ""; + public static final Integer NULL_ENTREZ_ID = -1; + + private final String geneId; + private final String geneSymbol; + + private final String hgncId; + private final String hgncSymbol; + + private final String entrezId; + private final String ensemblId; + private final String ucscId; + + private GeneIdentifier(Builder builder) { + this.geneId = Objects.requireNonNull(builder.geneId, "GeneIdentifier geneId cannot be null"); + this.geneSymbol = Objects.requireNonNull(builder.geneSymbol, "GeneIdentifier geneSymbol cannot be null"); + + this.hgncId = builder.hgncId; + this.hgncSymbol = builder.hgncSymbol; + + //the entrezId is used by the Prioritisers as a primary key for the gene so this is important! + this.entrezId = validateEntrezId(builder.entrezId); + this.ensemblId = builder.ensemblId; + this.ucscId = builder.ucscId; + } + + private String validateEntrezId(String entrezId) { + Objects.requireNonNull(entrezId, "GeneIdentifier entrezId cannot be null"); + if (entrezId.isEmpty()) { + //This is permissible - will default to returning a NULL_ENTREZ_ID + return entrezId; + } + try { + Integer.valueOf(entrezId); + } catch (NumberFormatException e) { + throw new IllegalArgumentException("entrezId '" + entrezId + "' is invalid. GeneIdentifier entrezId must be a positive integer"); + } + return entrezId; + } + + public String getGeneId() { + return geneId; + } + + public String getGeneSymbol() { + return geneSymbol; + } + + public String getHgncId() { + return hgncId; + } + + public String getHgncSymbol() { + return hgncSymbol; + } + + public String getEntrezId() { + return entrezId; + } + + public Integer getEntrezIdAsInteger() { + return entrezId.equals(EMPTY_FIELD) ? NULL_ENTREZ_ID : Integer.valueOf(entrezId); + } + + public boolean hasEntrezId() { + return !entrezId.isEmpty(); + } + + public String getEnsemblId() { + return ensemblId; + } + + public String getUcscId() { + return ucscId; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + GeneIdentifier that = (GeneIdentifier) o; + return Objects.equals(geneId, that.geneId) && + Objects.equals(geneSymbol, that.geneSymbol) && + Objects.equals(hgncId, that.hgncId) && + Objects.equals(hgncSymbol, that.hgncSymbol) && + Objects.equals(entrezId, that.entrezId) && + Objects.equals(ensemblId, that.ensemblId) && + Objects.equals(ucscId, that.ucscId); + } + + @Override + public int hashCode() { + return Objects.hash(geneId, geneSymbol, hgncId, hgncSymbol, entrezId, ensemblId, ucscId); + } + + @Override + public String toString() { + return "GeneIdentifier{" + + "geneId='" + geneId + '\'' + + ", geneSymbol='" + geneSymbol + '\'' + + ", hgncId='" + hgncId + '\'' + + ", hgncSymbol='" + hgncSymbol + '\'' + + ", entrezId='" + entrezId + '\'' + + ", ensemblId='" + ensemblId + '\'' + + ", ucscId='" + ucscId + '\'' + + '}'; + } + + public static Builder builder() { + return new Builder(); + } + + public static class Builder { + + private String geneId = EMPTY_FIELD; + private String geneSymbol = EMPTY_FIELD; + + private String hgncId = EMPTY_FIELD; + private String hgncSymbol = EMPTY_FIELD; + + private String entrezId = EMPTY_FIELD; + private String ensemblId = EMPTY_FIELD; + private String ucscId = EMPTY_FIELD; + + private Builder() {} + + public Builder geneId(String geneId) { + this.geneId = geneId; + return this; + } + + public Builder geneSymbol(String geneSymbol) { + this.geneSymbol = geneSymbol; + return this; + } + + public Builder hgncId(String hgncId) { + this.hgncId = hgncId; + return this; + } + + public Builder hgncSymbol(String hgncSymbol) { + this.hgncSymbol = hgncSymbol; + return this; + } + + public Builder entrezId(String entrezId) { + this.entrezId = entrezId; + return this; + } + + public Builder ensemblId(String ensemblId) { + this.ensemblId = ensemblId; + return this; + } + + public Builder ucscId(String ucscId) { + this.ucscId = ucscId; + return this; + } + + public GeneIdentifier build() { + return new GeneIdentifier(this); + } + } +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneticInterval.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/GeneticInterval.java similarity index 75% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneticInterval.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/GeneticInterval.java index 0be031c80..4032edd3c 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/GeneticInterval.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/GeneticInterval.java @@ -1,16 +1,35 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.model; - -import java.util.regex.Pattern; +package org.monarchinitiative.exomiser.core.model; +import de.charite.compbio.jannovar.data.ReferenceDictionary; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import de.charite.compbio.jannovar.data.ReferenceDictionary; +import java.util.regex.Pattern; /** * A simple genetic interval defined as "The spatial continuous physical entity @@ -21,7 +40,7 @@ * * @author Jules Jacobsen */ -public class GeneticInterval { +public class GeneticInterval implements ChromosomalRegion { private static final Logger logger = LoggerFactory.getLogger(GeneticInterval.class); @@ -65,14 +84,17 @@ public static GeneticInterval parseString(ReferenceDictionary refDict, String in return new GeneticInterval(localChr, localStart, localEnd); } + @Override public int getChromosome() { return chromosome; } + @Override public int getStart() { return start; } + @Override public int getEnd() { return end; } @@ -101,10 +123,7 @@ public boolean equals(Object obj) { if (this.start != other.start) { return false; } - if (this.end != other.end) { - return false; - } - return true; + return this.end == other.end; } @Override diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Inheritable.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Inheritable.java new file mode 100644 index 000000000..6cd5b0243 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Inheritable.java @@ -0,0 +1,51 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; + +import java.util.Set; + +/** + * Interface for describing the heritability of genetic elements such as genes or + * variants. + * + * @author Jules Jacobsen + */ +public interface Inheritable { + + Set getInheritanceModes(); + + void setInheritanceModes(Set inheritanceModes); + + /** + * @param modeOfInheritance + * @return true if the variants for this gene are compatible with the given + * {@code ModeOfInheritance} otherwise false. + */ + boolean isCompatibleWith(ModeOfInheritance modeOfInheritance); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/RegulatoryFeature.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/RegulatoryFeature.java new file mode 100644 index 000000000..54714d948 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/RegulatoryFeature.java @@ -0,0 +1,99 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import de.charite.compbio.jannovar.annotation.VariantEffect; + +/** + * @author Jules Jacobsen + */ +public class RegulatoryFeature implements ChromosomalRegion { + + public enum FeatureType {ENHANCER, TF_BINDING_SITE, PROMOTER, PROMOTER_FLANKING_REGION, CTCF_BINDING_SITE, OPEN_CHROMATIN, FANTOM_PERMISSIVE, UNKNOWN} + + private final int chromosome; + private final int start; + private final int end; + private final FeatureType featureType; + + public RegulatoryFeature(int chromosome, int start, int end, FeatureType featureType) { + this.chromosome = chromosome; + this.start = start; + this.end = end; + this.featureType = featureType; + } + + @Override + public int getChromosome() { + return chromosome; + } + + @Override + public int getStart() { + return start; + } + + @Override + public int getEnd() { + return end; + } + + public FeatureType getFeatureType() { + return featureType; + } + + public VariantEffect getVariantEffect() { + return VariantEffect.REGULATORY_REGION_VARIANT; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + + RegulatoryFeature that = (RegulatoryFeature) o; + + if (chromosome != that.chromosome) return false; + if (start != that.start) return false; + if (end != that.end) return false; + return featureType == that.featureType; + + } + + @Override + public int hashCode() { + int result = chromosome; + result = 31 * result + start; + result = 31 * result + end; + result = 31 * result + (featureType != null ? featureType.hashCode() : 0); + return result; + } + + @Override + public String toString() { + return "RegulatoryFeature{" + + "chromosome=" + chromosome + + ", start=" + start + + ", end=" + end + + ", featureType=" + featureType + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/TopologicalDomain.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/TopologicalDomain.java new file mode 100644 index 000000000..891b579ff --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/TopologicalDomain.java @@ -0,0 +1,104 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import java.util.Map; + +/** + * Represents a topological domain of a piece of chromatin + * + * @author Jules Jacobsen + */ +public class TopologicalDomain implements ChromosomalRegion { + + private final int chromosome; + private final int start; + private final int end; + private final Map genes; + + public TopologicalDomain(int chromosome, int start, int end, Map genes) { + this.chromosome = chromosome; + this.start = start; + this.end = end; + this.genes = genes; + } + + @Override + public int getChromosome() { + return chromosome; + } + + @Override + public int getStart() { + return start; + } + + @Override + public int getEnd() { + return end; + } + + public Map getGenes() { + return genes; + } + + public boolean containsPosition(VariantCoordinates variantCoordinates) { + if (variantCoordinates.getChromosome() == chromosome) { + int variantPosition = variantCoordinates.getPosition(); + return start <= variantPosition && end >= variantPosition; + } + return false; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + + TopologicalDomain that = (TopologicalDomain) o; + + if (chromosome != that.chromosome) return false; + if (start != that.start) return false; + if (end != that.end) return false; + return genes.equals(that.genes); + + } + + @Override + public int hashCode() { + int result = chromosome; + result = 31 * result + start; + result = 31 * result + end; + result = 31 * result + genes.hashCode(); + return result; + } + + @Override + public String toString() { + return "TopologicalDomain{" + + "chromosome=" + chromosome + + ", start=" + start + + ", end=" + end + + ", genes=" + genes + + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/TranscriptAnnotation.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/TranscriptAnnotation.java new file mode 100644 index 000000000..053cf4134 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/TranscriptAnnotation.java @@ -0,0 +1,176 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import de.charite.compbio.jannovar.annotation.VariantEffect; + +import java.util.Objects; + +/** + * @author Jules Jacobsen + */ +public class TranscriptAnnotation { + + private static final TranscriptAnnotation EMPTY = TranscriptAnnotation.builder().build(); + + private final VariantEffect variantEffect; + + private final String geneSymbol; + private final String accession; + + private final String hgvsGenomic; + private final String hgvsCdna; + private final String hgvsProtein; + + private final int distanceFromNearestGene; + + private TranscriptAnnotation(Builder builder) { + this.variantEffect = builder.variantEffect; + this.geneSymbol = builder.geneSymbol; + this.accession = builder.accession; + this.hgvsGenomic = builder.hgvsGenomic; + this.hgvsCdna = builder.hgvsCdna; + this.hgvsProtein = builder.hgvsProtein; + this.distanceFromNearestGene = builder.distanceFromNearestGene; + } + + public static TranscriptAnnotation empty() { + return EMPTY; + } + + public VariantEffect getVariantEffect() { + return variantEffect; + } + + public String getGeneSymbol() { + return geneSymbol; + } + + public String getAccession() { + return accession; + } + + public String getHgvsGenomic() { + return hgvsGenomic; + } + + public String getHgvsCdna() { + return hgvsCdna; + } + + public String getHgvsProtein() { + return hgvsProtein; + } + + public int getDistanceFromNearestGene() { + return distanceFromNearestGene; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + TranscriptAnnotation that = (TranscriptAnnotation) o; + return distanceFromNearestGene == that.distanceFromNearestGene && + variantEffect == that.variantEffect && + Objects.equals(geneSymbol, that.geneSymbol) && + Objects.equals(accession, that.accession) && + Objects.equals(hgvsGenomic, that.hgvsGenomic) && + Objects.equals(hgvsCdna, that.hgvsCdna) && + Objects.equals(hgvsProtein, that.hgvsProtein); + } + + @Override + public int hashCode() { + return Objects.hash(variantEffect, geneSymbol, accession, hgvsGenomic, hgvsCdna, hgvsProtein, distanceFromNearestGene); + } + + @Override + public String toString() { + return "TranscriptAnnotation{" + + "variantEffect=" + variantEffect + + ", geneSymbol='" + geneSymbol + '\'' + + ", accession='" + accession + '\'' + + ", hgvsGenomic='" + hgvsGenomic + '\'' + + ", hgvsCdna='" + hgvsCdna + '\'' + + ", hgvsProtein='" + hgvsProtein + '\'' + + ", distanceFromNearestGene=" + distanceFromNearestGene + + '}'; + } + + public static Builder builder() { + return new Builder(); + } + + public static class Builder { + + private VariantEffect variantEffect = VariantEffect.SEQUENCE_VARIANT; + + private String geneSymbol = ""; + private String accession = ""; + + private String hgvsGenomic = ""; + private String hgvsCdna = ""; + private String hgvsProtein = ""; + + private int distanceFromNearestGene = Integer.MIN_VALUE; + + public Builder variantEffect(VariantEffect variantEffect) { + this.variantEffect = variantEffect; + return this; + } + + public Builder geneSymbol(String geneSymbol) { + this.geneSymbol = geneSymbol; + return this; + } + + public Builder accession(String accession) { + this.accession = accession; + return this; + } + + public Builder hgvsGenomic(String hgvsGenomic) { + this.hgvsGenomic = hgvsGenomic; + return this; + } + + public Builder hgvsCdna(String hgvsCdna) { + this.hgvsCdna = hgvsCdna; + return this; + } + + public Builder hgvsProtein(String hgvsProtein) { + this.hgvsProtein = hgvsProtein; + return this; + } + + public Builder distanceFromNearestGene(int distanceFromNearestGene) { + this.distanceFromNearestGene = distanceFromNearestGene; + return this; + } + + public TranscriptAnnotation build() { + return new TranscriptAnnotation(this); + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Variant.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Variant.java new file mode 100644 index 000000000..c63b14f3f --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/Variant.java @@ -0,0 +1,110 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model; + +import com.google.common.collect.Sets; +import de.charite.compbio.jannovar.annotation.VariantEffect; + +import java.util.List; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public interface Variant extends VariantCoordinates { + + Set codingVariantEffects = Sets.immutableEnumSet( + VariantEffect.STOP_LOST, + VariantEffect.STOP_RETAINED_VARIANT, + VariantEffect.STOP_GAINED, + VariantEffect.START_LOST, + VariantEffect.SYNONYMOUS_VARIANT, + VariantEffect.SPLICE_REGION_VARIANT, + VariantEffect.SPLICE_ACCEPTOR_VARIANT, + VariantEffect.SPLICE_DONOR_VARIANT, + VariantEffect.FRAMESHIFT_ELONGATION, + VariantEffect.FRAMESHIFT_TRUNCATION, + VariantEffect.FRAMESHIFT_VARIANT, + VariantEffect.MISSENSE_VARIANT, + VariantEffect.MNV, + VariantEffect.FEATURE_TRUNCATION, + VariantEffect.DISRUPTIVE_INFRAME_DELETION, + VariantEffect.DISRUPTIVE_INFRAME_INSERTION, + VariantEffect.INFRAME_DELETION, + VariantEffect.INFRAME_INSERTION, + VariantEffect.INTERNAL_FEATURE_ELONGATION, + VariantEffect.COMPLEX_SUBSTITUTION + ); + + Set regulatoryNonCodingVariantEffects = Sets.immutableEnumSet( + VariantEffect.MIRNA, + VariantEffect.REGULATORY_REGION_VARIANT, + VariantEffect.FIVE_PRIME_UTR_PREMATURE_START_CODON_GAIN_VARIANT, + VariantEffect.FIVE_PRIME_UTR_TRUNCATION, + VariantEffect.FIVE_PRIME_UTR_INTRON_VARIANT, + VariantEffect.FIVE_PRIME_UTR_EXON_VARIANT, + VariantEffect.TF_BINDING_SITE_VARIANT, + VariantEffect.THREE_PRIME_UTR_TRUNCATION, + VariantEffect.THREE_PRIME_UTR_INTRON_VARIANT, + VariantEffect.THREE_PRIME_UTR_EXON_VARIANT + + ); + + default boolean isNonCodingVariant() { + return !codingVariantEffects.contains(getVariantEffect()); + } + + double getPhredScore(); + + boolean isXChromosomal(); + + boolean isYChromosomal(); + + boolean isOffExome(); + + VariantEffect getVariantEffect(); + + void setVariantEffect(VariantEffect ve); + + List getAnnotations(); + + void setAnnotations(List transcriptAnnotations); + + String getGeneSymbol(); + + void setGeneSymbol(String symbol); + + int getEntrezGeneId(); + + void setEntrezGeneId(int id); + + /** + * @return a String such as chr6:g.29911092G>T + */ + String getHgvsGenome(); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/VariantCoordinates.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/VariantCoordinates.java new file mode 100644 index 000000000..3396510a6 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/VariantCoordinates.java @@ -0,0 +1,63 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model; + +/** + * + * + * @author Jules Jacobsen + */ +public interface VariantCoordinates { + + /** + * @return integer representation of the chromosome + */ + int getChromosome(); + + /** + * @return String representation of the chromosome. Chromosomes 1-22 will return + * a string value of their number. Sex chromosomes 23=X 24=Y and mitochondrial 25=M. + */ + String getChromosomeName(); + + /** + * @return 1-based position of the variant on the chromosome + */ + int getPosition(); + + /** + * @return String with the reference allele in the variant, without common + * suffix or prefix to reference allele. + */ + String getRef(); + + /** + * @return String with the alternative allele in the variant, without common + * suffix or prefix to reference allele. + */ + String getAlt(); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/VariantEvaluation.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/VariantEvaluation.java new file mode 100644 index 000000000..f5ee271f9 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/VariantEvaluation.java @@ -0,0 +1,794 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import com.google.common.base.Joiner; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import htsjdk.variant.variantcontext.*; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.VariantTypePathogenicityScores; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.*; + +/** + * This class is a wrapper for the {@code Variant} class from the jannovar + * hierarchy, and additionally includes all of the information on pathogenicity + * and frequency that is added to each variant by the Exomizer program. + * + * @author Jules Jacobsen + * @author Peter Robinson + */ +public class VariantEvaluation implements Comparable, Filterable, Inheritable, Variant { + + private static final Logger logger = LoggerFactory.getLogger(VariantEvaluation.class); + + //threshold over which a variant effect score is considered pathogenic + private static final float DEFAULT_PATHOGENICITY_THRESHOLD = 0.5f; + + // HTSJDK {@link VariantContext} instance of this allele + @JsonIgnore + private final VariantContext variantContext; + + // numeric index of the alternative allele in {@link #vc}. + private final int altAlleleId; + + //VariantCoordinates variables - these are a minimal requirement for describing a variant + private final int chr; + private final String chromosomeName; + private final int pos; + private final String ref; + private final String alt; + + //Variant variables, for a richer more VCF-like experience + private final int numIndividuals; + private final double phredScore; + + //Jannovar annotations + private final boolean isOffExome; + private VariantEffect variantEffect; + private List annotations; + private String geneSymbol; + private int entrezGeneId; + + //results from filters + private final Set passedFilterTypes; + private final Set failedFilterTypes; + + //score-related stuff + private FrequencyData frequencyData; + private PathogenicityData pathogenicityData; + private boolean contributesToGeneScore = false; + private Set inheritanceModes = EnumSet.noneOf(ModeOfInheritance.class); + + //bit of an orphan variable - look into refactoring this + @JsonIgnore + private List mutationRefList = null; + + private VariantEvaluation(Builder builder) { + chr = builder.chr; + chromosomeName = builder.chromosomeName; + pos = builder.pos; + ref = builder.ref; + alt = builder.alt; + + numIndividuals = builder.numIndividuals; + phredScore = builder.phredScore; + isOffExome = builder.isOffExome; + variantEffect = builder.variantEffect; + annotations = builder.annotations; + geneSymbol = builder.geneSymbol; + entrezGeneId = builder.entrezGeneId; + + variantContext = builder.variantContext; + altAlleleId = builder.altAlleleId; + + passedFilterTypes = EnumSet.copyOf(builder.passedFilterTypes); + failedFilterTypes = EnumSet.copyOf(builder.failedFilterTypes); + + frequencyData = builder.frequencyData; + pathogenicityData = builder.pathogenicityData; + } + + /** + * @return an integer representing the chromosome. 1-22 are obvious, + * chrX=23, ChrY=24, ChrM=25. + */ + @Override + public int getChromosome() { + return chr; + } + + /** + * @return a String such "4" or "X" in the case of chromosome 23 + */ + @Override + public String getChromosomeName() { + return chromosomeName; + } + + /** + * @return Return the 1-based start position of the variant on its + * chromosome. + */ + @Override + public int getPosition() { + return pos; + } + + /** + * @return reference allele, or "-" in case of insertions. + */ + @Override + public String getRef() { + return ref; + } + + /** + * @return alternative allele, or "-" in case of deletions. + */ + @Override + public String getAlt() { + return alt; + } + + public VariantContext getVariantContext() { + return variantContext; + } + + public int getAltAlleleId() { + return altAlleleId; + } + + @Override + public double getPhredScore() { + return phredScore; + } + + /** + * @return the most prevalent {@link VariantEffect} such as {@link VariantEffect#MISSENSE_VARIANT}, + * {@link VariantEffect#FRAMESHIFT_ELONGATION}, etc., or null + * if there is no annotated effect. + */ + @Override + public VariantEffect getVariantEffect() { + return variantEffect; + } + + @Override + public void setVariantEffect (VariantEffect ve){ + variantEffect = ve; + } + + /** + * @return the gene symbol associated with the variant. + */ + @Override + public String getGeneSymbol() { + return geneSymbol; + } + + @Override + public void setGeneSymbol(String symbol) { + geneSymbol = symbol; + } + + @Override + public int getEntrezGeneId() { + return entrezGeneId; + } + + @Override + public void setEntrezGeneId(int id) { + entrezGeneId = id; + } + + @Override + public boolean isXChromosomal() { + return chr == 23; + } + + @Override + public boolean isYChromosomal() { + return chr == 24; + } + + /** + * @return true if the variant belongs to a class that is non-exonic and + * non-splicing. + */ + @Override + public boolean isOffExome() { + return isOffExome; + } + + /** + * This function returns a list of all of the + * {@link de.charite.compbio.jannovar.annotation.Annotation Annotation} objects that have been + * associated with the current variant. This function can be called if + * client code wants to display one line for each affected transcript, e.g., + *

    + *
  • LTF(uc003cpr.3:exon5:c.30_31insAAG:p.R10delinsRR) + *
  • LTF(uc003cpq.3:exon2:c.69_70insAAG:p.R23delinsRR) + *
  • LTF(uc010hjh.3:exon2:c.69_70insAAG:p.R23delinsRR) + *
+ *

+ */ + @Override + public List getAnnotations() { + return annotations; + } + + @Override + public void setAnnotations(List annotations) { + this.annotations = annotations; + } + + public boolean hasAnnotations() { + return !getAnnotations().isEmpty(); + } + + /** + * @return a String such as chr6:g.29911092G>T + */ + @Override + public String getHgvsGenome() { + return chr + ":g." + pos + ref + ">" + alt; + } + + public String getGenotypeString() { + // collect genotype string list + List gtStrings = new ArrayList<>(); + for (Genotype gt : variantContext.getGenotypes()) { + boolean firstAllele = true; + StringBuilder builder = new StringBuilder(); + for (Allele allele : gt.getAlleles()) { + if (firstAllele) { + firstAllele = false; + } else { + builder.append('/'); + } + + if (allele.isNoCall()) { + builder.append('.'); + } else if (allele.equals(variantContext.getAlternateAllele(altAlleleId))) { + builder.append('1'); + } else { + builder.append('0'); + } + } + gtStrings.add(builder.toString()); + } + + // normalize 1/0 to 0/1 and join genotype strings with colon + for (int i = 0; i < gtStrings.size(); ++i) { + if (gtStrings.get(i).equals("1/0")) { + gtStrings.set(i, "0/1"); + } + } + return Joiner.on(":").join(gtStrings); + } + + /** + * @return the number of individuals with a genotype at this variant. + */ + public int getNumberOfIndividuals() { + return numIndividuals; + } + + /** + * Add a mutation from ClinVar or HGMD to {@link #mutationRefList}. Note + * that for now, we code this as cv|url or hd|url to save space. + * + * @param anch An HTML anchor element. + */ + public void addMutationReference(String anch) { + if (this.mutationRefList == null) { + this.mutationRefList = new ArrayList<>(); + } + this.mutationRefList.add(anch); + } + + /** + * @return list of ClinVar and HGMD references for this position. Note, it + * returns an empty (but non-null) list if no mutations were found. + */ + public List getMutationReferenceList() { + if (this.mutationRefList == null) { + return new ArrayList<>(); + } else { + return this.mutationRefList; + } + } + + /** + * This method is used to add a {@code FilterResult} object to this variant. + * Such objects represent the results of running the variant through a {@code Filter}. + * + * @param filterResult + * @return + */ + @Override + public boolean addFilterResult(FilterResult filterResult) { + if (filterResult.passed()) { + return addPassedFilterResult(filterResult); + } + return addFailedFilterResult(filterResult); + } + + private boolean addPassedFilterResult(FilterResult filterResult) { + passedFilterTypes.add(filterResult.getFilterType()); + return true; + } + + private boolean addFailedFilterResult(FilterResult filterResult) { + failedFilterTypes.add(filterResult.getFilterType()); + return false; + } + + /** + * @return the set of FilterResult objects that represent the result of + * filtering + */ + public Set getPassedFilterTypes() { + return passedFilterTypes; + } + + /** + * @return the Set of {@code FilterType} which the {@code VariantEvaluation} + * failed to pass. + */ + public Set getFailedFilterTypes() { + return failedFilterTypes; + } + + /** + * We're making the assumption that all variants will pass a filter, so if + * no filters have been applied, this method will return true. Once a + * {@link VariantEvaluation} has been filtered this will return true until + * the {@link VariantEvaluation} has failed a filter. + *

+ * Note: This may change so that passed/failed/unfiltered can only ever be + * true for one status. + * + * @return + */ + @Override + public boolean passedFilters() { + return failedFilterTypes.isEmpty(); + } + + @Override + public boolean passedFilter(FilterType filterType) { + return !failedFilterTypes.contains(filterType) && passedFilterTypes.contains(filterType); + } + + private boolean isUnFiltered() { + return failedFilterTypes.isEmpty() && passedFilterTypes.isEmpty(); + } + + public FilterStatus getFilterStatus() { + if (isUnFiltered()) { + return FilterStatus.UNFILTERED; + } + if (passedFilters()) { + return FilterStatus.PASSED; + } + return FilterStatus.FAILED; + } + + /** + * Returns the variant score (prediction of the pathogenicity + * and relevance of the Variant) by combining the frequency and pathogenicity scores for this variant. + * + * @return a score between 0 and 1 + */ + public float getVariantScore() { + return getFrequencyScore() * getPathogenicityScore(); + } + + /** + * @return a score between 0 and 1 + */ + public float getFrequencyScore() { + return frequencyData.getScore(); + } + + /** + * Some variants such as splice site variants, are assumed to be pathogenic. At the moment no particular + * software is used to evaluate this, we merely take the variant class from the Jannovar code and assign a score. + * + * Note that we use results of filtering to remove Variants that are predicted to be simply non-pathogenic. However, + * amongst variants predicted to be potentially pathogenic, there are different strengths of prediction, which is + * what this score tries to reflect. + * + * For missense mutations, we use the predictions of MutationTaster, polyphen, and SIFT taken from the data from + * the dbNSFP project. + * + * The score returned here is therefore an overall pathogenicity score defined on the basis of + * "medical genetic intuition". + + * @return a score between 0 and 1 + */ + public float getPathogenicityScore() { + if (pathogenicityData.hasPredictedScore()) { + return pathogenicityData.getScore(); + } + //this will return 0 for SEQUENCE_VARIANT effects (i.e. unknown) + //return the default score - in time we might want to use the predicted score if there are any and handle things like the missense variants. + return VariantTypePathogenicityScores.getPathogenicityScoreOf(variantEffect); + } + + /* + * Retained in case we have some non-missesnse variants in the database. Shouldn't be needed though. + */ + private float calculateMissenseScore(PathogenicityData pathogenicityData) { + if (pathogenicityData.hasPredictedScore()) { + return pathogenicityData.getScore(); + } + return VariantTypePathogenicityScores.DEFAULT_MISSENSE_SCORE; + } + + public FrequencyData getFrequencyData() { + return frequencyData; + } + + public void setFrequencyData(FrequencyData frequencyData) { + this.frequencyData = frequencyData; + } + + public PathogenicityData getPathogenicityData() { + return pathogenicityData; + } + + public void setPathogenicityData(PathogenicityData pathogenicityData) { + this.pathogenicityData = pathogenicityData; + } + + public void setAsContributingToGeneScore() { + contributesToGeneScore = true; + } + + public boolean contributesToGeneScore() { + return contributesToGeneScore; + } + + /** + * @return true or false depending on whether the variant effect is considered pathogenic. Pathogenoic variants are + * considered to be those with a pathogenicity score greater than 0.5. Missense variants will always return true. + */ + public boolean isPredictedPathogenic() { + if (variantEffect == VariantEffect.MISSENSE_VARIANT) { + //we're making the assumption that a missense variant is always potentially pathogenic. + //Given the prediction scores are predictions, they could fall below the default threshold so + //we'll leave it up to the user to decide + return true; + } else { + return getPathogenicityScore() >= DEFAULT_PATHOGENICITY_THRESHOLD; + } + } + + @Override + public void setInheritanceModes(Set compatibleModes) { + if (compatibleModes.isEmpty()) { + inheritanceModes = EnumSet.noneOf(ModeOfInheritance.class); + } else { + this.inheritanceModes = EnumSet.copyOf(compatibleModes); + } + } + + @Override + public Set getInheritanceModes() { + return inheritanceModes; + } + + @Override + public boolean isCompatibleWith(ModeOfInheritance modeOfInheritance) { + return inheritanceModes.contains(modeOfInheritance); + } + + /** + * Sorts variants according to their natural ordering of genome position. Variants are sorted according to + * chromosome number, chromosome position, reference sequence then alternative sequence. + * + * @param other + * @return comparator score consistent with equals. + */ + @Override + public int compareTo(VariantEvaluation other) { + if (this.chr != other.chr) { + return Integer.compare(this.chr, other.chr); + } + if (this.pos != other.pos) { + return Integer.compare(this.pos, other.pos); + } + if (!this.ref.equals(other.ref)) { + return this.ref.compareTo(other.ref); + } + return this.alt.compareTo(other.alt); + } + + public static class RankBasedComparator implements Comparator { + + @Override + public int compare(VariantEvaluation v1, VariantEvaluation v2) { + return compareByRank(v1, v2); + } + } + + public static int compareByRank(VariantEvaluation some, VariantEvaluation other) { + if (some.contributesToGeneScore != other.contributesToGeneScore) { + return -Boolean.compare(some.contributesToGeneScore, other.contributesToGeneScore); + } + float thisScore = some.getVariantScore(); + float otherScore = other.getVariantScore(); + if (thisScore != otherScore) { + return -Float.compare(thisScore, otherScore); + } + if (some.chr != other.chr) { + return Integer.compare(some.chr, other.chr); + } + if (some.pos != other.pos) { + return Integer.compare(some.pos, other.pos); + } + if (!some.ref.equals(other.ref)) { + return some.ref.compareTo(other.ref); + } + return some.alt.compareTo(other.alt); + } + + @Override + public int hashCode() { + int hash = 3; + hash = 71 * hash + this.chr; + hash = 71 * hash + this.pos; + hash = 71 * hash + Objects.hashCode(this.ref); + hash = 71 * hash + Objects.hashCode(this.alt); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final VariantEvaluation other = (VariantEvaluation) obj; + if (this.chr != other.chr) { + return false; + } + if (this.pos != other.pos) { + return false; + } + if (!Objects.equals(this.ref, other.ref)) { + return false; + } + return Objects.equals(this.alt, other.alt); + } + + public String toString() { + //TODO: expose frequency and pathogenicity scores? + if(contributesToGeneScore) { + //Add a star to the output string between the variantEffect and the score + return "VariantEvaluation{chr=" + chr + " pos=" + pos + " ref=" + ref + " alt=" + alt + " qual=" + phredScore + " " + variantEffect + " * score=" + getVariantScore() + " " + getFilterStatus() + " failedFilters=" + failedFilterTypes + " passedFilters=" + passedFilterTypes + + " compatibleWith=" + inheritanceModes + "}"; + } + return "VariantEvaluation{chr=" + chr + " pos=" + pos + " ref=" + ref + " alt=" + alt + " qual=" + phredScore + " " + variantEffect + " score=" + getVariantScore() + " " + getFilterStatus() + " failedFilters=" + failedFilterTypes + " passedFilters=" + passedFilterTypes + + " compatibleWith=" + inheritanceModes + "}"; + } + + public static Builder builder(int chr, int pos, String ref, String alt) { + return new Builder(chr, pos, ref, alt); + } + + /** + * Builder class for producing a valid VariantEvaluation. + */ + public static class Builder { + + private int chr; + private String chromosomeName; + private int pos; + private String ref; + private String alt; + + private int numIndividuals = 1; + private double phredScore = 0; + + private boolean isOffExome; + private VariantEffect variantEffect = VariantEffect.SEQUENCE_VARIANT; + private List annotations = Collections.emptyList(); + private String geneSymbol = "."; + private int entrezGeneId = GeneIdentifier.NULL_ENTREZ_ID; + + private VariantContext variantContext; + private int altAlleleId; + + private PathogenicityData pathogenicityData = PathogenicityData.empty(); + private FrequencyData frequencyData = FrequencyData.empty(); + + private final Set passedFilterTypes = EnumSet.noneOf(FilterType.class); + private final Set failedFilterTypes = EnumSet.noneOf(FilterType.class); + + /** + * Creates a minimal variant + * + * @param chr + * @param pos + * @param ref + * @param alt + */ + private Builder(int chr, int pos, String ref, String alt) { + this.chr = chr; + this.pos = pos; + this.ref = ref; + this.alt = alt; + } + + public Builder chromosomeName(String chromosomeName) { + this.chromosomeName = chromosomeName; + return this; + } + + /** + * Safety method to handle creating the chromosome name in cases where + * the name is not explicitly set. This should happen in the + * VariantFactory, but for testing we're happy with a sensible default + * value. It's not critical, but is nice to prevent a lot of silly + * duplicate code. + * + * @param chr + * @return + */ + private String buildChromosomeName(int chr) { + switch (chr) { + case 23: + return "X"; + case 24: + return "Y"; + case 25: + return "M"; + default: + return String.valueOf(chr); + } + } + + public Builder variantContext(VariantContext variantContext) { + this.variantContext = variantContext; + return this; + } + + public Builder altAlleleId(int altAlleleId) { + this.altAlleleId = altAlleleId; + return this; + } + + public Builder quality(double phredScore) { + this.phredScore = phredScore; + return this; + } + + public Builder numIndividuals(int numIndividuals) { + this.numIndividuals = numIndividuals; + return this; + } + + public Builder isOffExome(boolean isOffExome) { + this.isOffExome = isOffExome; + return this; + } + + public Builder variantEffect(VariantEffect variantEffect) { + this.variantEffect = variantEffect; + return this; + } + + public Builder annotations(List annotations) { + //TODO: can this be an ImmutableList.copyOf() ? + this.annotations = annotations; + return this; + } + + public Builder geneSymbol(String geneSymbol) { + if (geneSymbol.equals(".")) { + this.geneSymbol = geneSymbol; + } else { + String[] tokens = geneSymbol.split(","); + this.geneSymbol = tokens[0]; + } + return this; + } + + public Builder geneId(int geneId) { + this.entrezGeneId = geneId; + return this; + } + + public Builder pathogenicityData(PathogenicityData pathogenicityData) { + this.pathogenicityData = pathogenicityData; + return this; + } + + public Builder frequencyData(FrequencyData frequencyData) { + this.frequencyData = frequencyData; + return this; + } + + public Builder filterResults(FilterResult... filterResults) { + return filterResults(Arrays.asList(filterResults)); + } + + public Builder filterResults(Collection filterResults) { + for (FilterResult filterResult : filterResults) { + if (filterResult.passed()) { + this.passedFilterTypes.add(filterResult.getFilterType()); + } else { + this.failedFilterTypes.add(filterResult.getFilterType()); + } + } + return this; + } + + public VariantEvaluation build() { + if (chromosomeName == null) { + chromosomeName = buildChromosomeName(chr); + } + + if (variantContext == null) { + variantContext = buildVariantContext(chr, pos, ref, alt, phredScore); + } + return new VariantEvaluation(this); + } + + /** + * @return a generic one-based position variant context with a heterozygous genotype having no attributes. + */ + private VariantContext buildVariantContext(int chr, int pos, String ref, String alt, double qual) { + Allele refAllele = Allele.create(ref, true); + Allele altAllele = Allele.create(alt); + List alleles = Arrays.asList(refAllele, altAllele); + + VariantContextBuilder vcBuilder = new VariantContextBuilder(); + + // build Genotype + GenotypeBuilder gtBuilder = new GenotypeBuilder("sample").noAttributes(); + //default to HETEROZYGOUS + gtBuilder.alleles(alleles); + + // build VariantContext + vcBuilder.loc("chr" + chr, pos, pos - 1L + ref.length()); + vcBuilder.alleles(alleles); + vcBuilder.genotypes(gtBuilder.make()); + vcBuilder.log10PError(-0.1 * qual); + + return vcBuilder.make(); + } + + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/Frequency.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/Frequency.java new file mode 100644 index 000000000..4faf9bced --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/Frequency.java @@ -0,0 +1,86 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.model.frequency; + +import java.util.Objects; + +/** + * + * @author Jules Jacobsen + */ +public final class Frequency { + + private final float frequency; + private final FrequencySource source; + + public static Frequency valueOf(float frequency, FrequencySource source) { + return new Frequency(frequency, source); + } + + private Frequency(float frequency, FrequencySource source) { + this.frequency = frequency; + this.source = source; + } + + public float getFrequency() { + return frequency; + } + + public FrequencySource getSource() { + return source; + } + + public boolean isOverThreshold(float threshold) { + return frequency > threshold; + } + + @Override + public int hashCode() { + return Objects.hash(frequency, source); + } + + @Override + public boolean equals(Object o) { + if (this == o) { + return true; + } + if (!(o instanceof Frequency)) { + return false; + } + Frequency frequency1 = (Frequency) o; + if (source != frequency1.source) { + return false; + } + return Float.compare(frequency1.frequency, frequency) == 0; + } + + @Override + public String toString() { + return "Frequency{" + frequency + " source=" + source + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyData.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyData.java new file mode 100644 index 000000000..bec748f66 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyData.java @@ -0,0 +1,215 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.frequency; + +import com.google.common.collect.Maps; + +import java.util.*; + +/** + * Frequency data for the variant from the Thousand Genomes, the Exome Server + * Project and Broad ExAC datasets. + * + * Note that the frequency data are expressed as percentages. + * + * @author Jules Jacobsen + */ +public class FrequencyData { + + private static final FrequencyData EMPTY_DATA = new FrequencyData(RsId.empty(), Collections.emptyMap()); + + private final RsId rsId; + private final Map knownFrequencies; + + public static FrequencyData of(RsId rsId, Collection frequencies) { + return validate(rsId, frequencies); + } + + public static FrequencyData of(RsId rsId, Frequency frequency) { + return validate(rsId, Collections.singletonList(frequency)); + } + + public static FrequencyData of(RsId rsId, Frequency... frequency) { + return validate(rsId, Arrays.asList(frequency)); + } + + public static FrequencyData empty() { + return EMPTY_DATA; + } + + private static FrequencyData validate(RsId rsId, Collection frequencies) { + Objects.requireNonNull(rsId, "RsId cannot be null"); + Objects.requireNonNull(frequencies, "frequencies cannot be null"); + + if (rsId.isEmpty() && frequencies.isEmpty()) { + return FrequencyData.empty(); + } + Map frequencySourceMap = new EnumMap<>(FrequencySource.class); + for (Frequency frequency : frequencies) { + frequencySourceMap.put(frequency.getSource(), frequency); + } + return new FrequencyData(rsId, frequencySourceMap); + } + + private FrequencyData(RsId rsId, Map knownFrequencies) { + this.rsId = rsId; + this.knownFrequencies = Maps.immutableEnumMap(knownFrequencies); + } + + //RSID ought to belong to the Variant, not the frequencyData, but its here for convenience + public RsId getRsId() { + return rsId; + } + + public Frequency getFrequencyForSource(FrequencySource source) { + return knownFrequencies.get(source); + } + + /** + * @return true if this variant is at all represented in dbSNP or ESP data, + * regardless of frequency. That is, if the variant has an RS id in dbSNP or + * any frequency data at all, return true, otherwise false. + */ + public boolean isRepresentedInDatabase() { + return hasDbSnpRsID() || hasKnownFrequency(); + } + + public boolean hasDbSnpData() { + return knownFrequencies.containsKey(FrequencySource.THOUSAND_GENOMES); + } + + public boolean hasDbSnpRsID() { + return !rsId.isEmpty(); + } + + public boolean hasEspData() { + for (FrequencySource dataSource : knownFrequencies.keySet()) { + switch (dataSource) { + case ESP_AFRICAN_AMERICAN: + case ESP_EUROPEAN_AMERICAN: + case ESP_ALL: + return true; + default: + } + } + return false; + } + + public boolean hasExacData() { + for (FrequencySource dataSource : knownFrequencies.keySet()) { + switch (dataSource) { + case EXAC_AFRICAN_INC_AFRICAN_AMERICAN: + case EXAC_AMERICAN: + case EXAC_EAST_ASIAN: + case EXAC_FINNISH: + case EXAC_NON_FINNISH_EUROPEAN: + case EXAC_OTHER: + case EXAC_SOUTH_ASIAN: + return true; + default: + } + } + return false; + } + + public boolean hasKnownFrequency() { + return !knownFrequencies.isEmpty(); + } + + /** + * Returns a list of Frequency objects. If there is no known frequency data + * then an empty list will be returned. + * + * @return a List of Frequency data + */ + public List getKnownFrequencies() { + return new ArrayList<>(knownFrequencies.values()); + } + + /** + * Returns a the maximum frequency - if there are no known frequencies/ no + * frequency data it will return 0. + * + * @return + */ + public float getMaxFreq() { + //TODO this is analagous to PathogenicityData.getMostPathogenicScore() + //TODO so should really return a Frequency object... + float maxFreq = 0f; + for (Frequency freq : knownFrequencies.values()) { + //TODO ...but frequency needs to implement comparable first + maxFreq = Math.max(maxFreq, freq.getFrequency()); + } + return maxFreq; + } + + @Override + public int hashCode() { + int hash = 5; + hash = 29 * hash + Objects.hashCode(this.rsId); + hash = 29 * hash + Objects.hashCode(this.knownFrequencies); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final FrequencyData other = (FrequencyData) obj; + if (!Objects.equals(this.rsId, other.rsId)) { + return false; + } + return Objects.equals(this.knownFrequencies, other.knownFrequencies); + } + + @Override + public String toString() { + return "FrequencyData{" + "rsId=" + rsId + ", knownFrequencies=" + knownFrequencies.values() + '}'; + } + + private static final float VERY_RARE_SCORE = 1f; + private static final float NOT_RARE_SCORE = 0f; + + /** + * @return returns a numerical value that is closer to one, the rarer + * the variant is. If a variant is not entered in any of the data + * sources, it returns one (highest score). Otherwise, it identifies the + * maximum MAF in any of the databases, and returns a score that depends on + * the MAF. Note that the frequency is expressed as a percentage. + */ + public float getScore() { + + float max = getMaxFreq(); + + if (max <= 0) { + return VERY_RARE_SCORE; + } else if (max > 2) { + return NOT_RARE_SCORE; + } else { + return 1.13533f - (0.13533f * (float) Math.exp(max)); + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencySource.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencySource.java new file mode 100644 index 000000000..02deeeef9 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencySource.java @@ -0,0 +1,77 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this template, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model.frequency; + +import com.google.common.collect.Sets; + +import java.util.EnumSet; +import java.util.Set; + +/** + * Enum describing where the frequency data has originated. + * + * @author Damian Smedley + * @author Jules Jacobsen + */ +public enum FrequencySource { + + UNKNOWN("unknown"), + //Frequencies from a local datasource + LOCAL("Local"), + + //Thousand genomes http://www.1000genomes.org/ + THOUSAND_GENOMES("1000Genomes"), + + //ESP project http://evs.gs.washington.edu/EVS/ + ESP_AFRICAN_AMERICAN("ESP AA"), + ESP_EUROPEAN_AMERICAN("ESP EA"), + ESP_ALL("ESP All"), + + //ExAC project http://exac.broadinstitute.org/about + EXAC_AFRICAN_INC_AFRICAN_AMERICAN("ExAC AFR"), + EXAC_AMERICAN("ExAC AMR"), + EXAC_EAST_ASIAN("ExAC EAS"), + EXAC_SOUTH_ASIAN("ExAC SAS"), + EXAC_FINNISH("ExAC FIN"), + EXAC_NON_FINNISH_EUROPEAN("ExAC NFE"), + EXAC_OTHER("ExAC OTH"); + + public static final Set ALL_ESP_SOURCES = Sets.immutableEnumSet(EnumSet.range(ESP_AFRICAN_AMERICAN, ESP_ALL)); + + public static final Set ALL_EXAC_SOURCES = Sets.immutableEnumSet(EnumSet.range(EXAC_AFRICAN_INC_AFRICAN_AMERICAN, EXAC_OTHER)); + + public static final Set ALL_EXTERNAL_FREQ_SOURCES = Sets.immutableEnumSet(EnumSet.range(THOUSAND_GENOMES, EXAC_OTHER)); + + private final String source; + + FrequencySource(String source) { + this.source = source; + } + + public String getSource() { + return source; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/RsId.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/RsId.java new file mode 100644 index 000000000..c1175d2bb --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/frequency/RsId.java @@ -0,0 +1,115 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.frequency; + +import java.util.Objects; + +/** + * Immutable value Class representing an NCBI dbSNP reference SNP rsID. + *

+ * {@link http://www.ncbi.nlm.nih.gov/projects/SNP/index.html} + * + * @author Jules Jacobsen + */ +public final class RsId { + + private static final RsId EMPTY = new RsId(0); + private static final String VCF_EMPTY_VALUE = "."; + + private final int id; + + /** + * Returns new RsId from the integer provided. Integers less than or equal to zero will return an instance + * representing an empty value. + * + * @param id + * @return the rsId value represented by the argument provided. + */ + public static RsId valueOf(int id) { + if (id <= 0) { + return EMPTY; + } + return new RsId(id); + } + + /** + * Parses rs ids from their VCF representation - can be in the form "rs123456", "123456" or "." for an empty value. + * Will accept a null as representing an empty value. + * + * @param id a {@code String} containing the {@code int} representation to be parsed + * @return the rsId value represented by the argument provided. + */ + public static RsId valueOf(String id) { + if (VCF_EMPTY_VALUE.equals(id) || id == null) { + return EMPTY; + } + if (id.startsWith("rs")) { + return new RsId(Integer.parseInt(id.substring(2))); + } + return new RsId(Integer.parseInt(id)); + } + + /** + * Returns an instance of an empty value. This is represented as '.' in VCF notation. + * + * @return an empty rsId value. + */ + public static RsId empty() { + return EMPTY; + } + + private RsId(int id) { + this.id = id; + } + + public int getId() { + return id; + } + + public boolean isEmpty() { + return id == EMPTY.id; + } + + @Override + public int hashCode() { + return Objects.hash(id); + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + RsId rsId = (RsId) o; + return id == rsId.id; + } + + /** + * Returns an rsID formatted string - 'rs123456' or '.' for an empty value. + */ + @Override + public String toString() { + if (id == EMPTY.id) { + return VCF_EMPTY_VALUE; + } + return "rs" + id; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/BasePathogenicityScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/BasePathogenicityScore.java new file mode 100644 index 000000000..75e9c300b --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/BasePathogenicityScore.java @@ -0,0 +1,115 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import java.util.Objects; + +/** + * + * @author Jules Jacobsen + */ +abstract class BasePathogenicityScore implements PathogenicityScore { + + //Higher scores are more likely pathogenic so this is the reverse of what's normal (we're using a probablility of pathogenicity) + //comparable requires a negative integer, zero, or a positive integer as this object is less than, equal to, or greater than the specified object + static final int MORE_PATHOGENIC = -1; + static final int EQUALS = 0; + static final int LESS_PATHOGENIC = 1; + + protected final float score; + protected final PathogenicitySource source; + + BasePathogenicityScore(float score, PathogenicitySource source) { + this.score = score; + this.source = source; + } + + @Override + public float getScore() { + return score; + } + + @Override + public PathogenicitySource getSource() { + return source; + } + + @Override + public int hashCode() { + return Objects.hash(score, source); + } + + @Override + public boolean equals(Object o) { + if (this == o) { + return true; + } + if (!(o instanceof PathogenicityScore)) { + return false; + } + final BasePathogenicityScore other = (BasePathogenicityScore) o; + + if (source != other.source) { + return false; + } + + return Float.compare(other.score, score) == 0; + } + + /** + * For the purposes of this comparator scores are ranked on a scale of 0 to + * 1 where 0 is considered probably non-pathogenic and 1 probably + * pathogenic. The comparator will rank the more pathogenic + * PathogenicityScore higher than a less pathogenic score such that in a + * sorted list the most pathogenic score will come first. + * + * Note: this class has a natural ordering that is inconsistent with equals. + * + * @param other + * @return + */ + @Override + public int compareTo(PathogenicityScore other) { + float otherScore = other.getScore(); + float thisScore = score; + //remember if we're comparing this against a SIFT score we need to invert the + //SIFT score otherwise the comparison will be inverted + if (other.getClass() == SiftScore.class) { + otherScore = 1f - other.getScore(); + } + if (this.getClass() == SiftScore.class) { + thisScore = 1f - score; + } + + if (thisScore == otherScore) { + return EQUALS; + } + if (thisScore > otherScore) { + return MORE_PATHOGENIC; + } + return LESS_PATHOGENIC; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/CaddScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/CaddScore.java new file mode 100644 index 000000000..95da21510 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/CaddScore.java @@ -0,0 +1,44 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +/** + * CADD info - see {@link http://cadd.gs.washington.edu/info} + * + * @author Jules Jacobsen + */ +public final class CaddScore extends BasePathogenicityScore { + + public static CaddScore valueOf(float score) { + return new CaddScore(score); + } + + private CaddScore(float score) { + super(score, PathogenicitySource.CADD); + } + + @Override + public String toString() { + return "CADD: " + score; + } + + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/MutationTasterScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/MutationTasterScore.java new file mode 100644 index 000000000..54caff618 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/MutationTasterScore.java @@ -0,0 +1,49 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +/** + * + * @author Jules Jacobsen + */ +public final class MutationTasterScore extends BasePathogenicityScore { + + public static final float MTASTER_THRESHOLD = 0.94f; + + public static MutationTasterScore valueOf(float score) { + return new MutationTasterScore(score); + } + + private MutationTasterScore(float score) { + super(score, PathogenicitySource.MUTATION_TASTER); + } + + @Override + public String toString() { + if (score > MTASTER_THRESHOLD) { + return String.format("Mutation Taster: %.3f (P)", score); + } else { + return String.format("Mutation Taster: %.3f", score); + } + } + + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityData.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityData.java new file mode 100644 index 000000000..14411f3cb --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityData.java @@ -0,0 +1,164 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import java.util.*; + +/** + * Container for PathogenicityScore data about a variant. + * + * @author Jules Jacobsen + */ +public class PathogenicityData { + + private static final PathogenicityData EMPTY_DATA = new PathogenicityData(Collections.emptyList()); + + private final Map pathogenicityScores; + + public static PathogenicityData of(PathogenicityScore pathScore) { + return new PathogenicityData(Collections.singletonList(pathScore)); + } + + public static PathogenicityData of(PathogenicityScore... pathScore) { + return new PathogenicityData(Arrays.asList(pathScore)); + } + + public static PathogenicityData of(Collection pathScores) { + return new PathogenicityData(pathScores); + } + + public static PathogenicityData empty() { + return EMPTY_DATA; + } + + private PathogenicityData(Collection pathScores) { + pathogenicityScores = new EnumMap<>(PathogenicitySource.class); + for (PathogenicityScore pathScore : pathScores) { + if (pathScore != null) { + pathogenicityScores.put(pathScore.getSource(), pathScore); + } + } + } + + public PolyPhenScore getPolyPhenScore() { + return (PolyPhenScore) getPredictedScore(PathogenicitySource.POLYPHEN); + } + + public MutationTasterScore getMutationTasterScore() { + return (MutationTasterScore) getPredictedScore(PathogenicitySource.MUTATION_TASTER); + } + + public SiftScore getSiftScore() { + return (SiftScore) getPredictedScore(PathogenicitySource.SIFT); + } + + public CaddScore getCaddScore() { + return (CaddScore) getPredictedScore(PathogenicitySource.CADD); + } + + public RemmScore getRemmScore() { + return (RemmScore) getPredictedScore(PathogenicitySource.REMM); + } + + public List getPredictedPathogenicityScores() { + return new ArrayList<>(pathogenicityScores.values()); + } + + public boolean isEmpty() { + return pathogenicityScores.isEmpty(); + } + + public boolean hasPredictedScore() { + return !pathogenicityScores.isEmpty(); + } + + public boolean hasPredictedScore(PathogenicitySource pathogenicitySource) { + return pathogenicityScores.containsKey(pathogenicitySource); + } + + /** + * Returns the PathogenicityScore from the requested source, or null if not present. + * + * @param pathogenicitySource + * @return + */ + public PathogenicityScore getPredictedScore(PathogenicitySource pathogenicitySource) { + return pathogenicityScores.get(pathogenicitySource); + } + + /** + * @return The most pathogenic score or null if there are no predicted scores + */ + public PathogenicityScore getMostPathogenicScore() { + if (pathogenicityScores.isEmpty()) { + return null; + //TODO: return a new NonPathogenicPathogenicityScore? Optional? +// return new AbstractPathogenicityScore(VariantTypePathogenicityScores.NON_PATHOGENIC_SCORE, VARIANT_TYPE); + } + List knownPathScores = this.getPredictedPathogenicityScores(); + Collections.sort(knownPathScores); + return knownPathScores.get(0); +// return pathogenicityScores.values().stream().max(Comparator.naturalOrder()).orElse(null); + } + + + /** + * @return the predicted pathogenicity score for this data set. The score is ranked from 0 (non-pathogenic) to 1 (highly pathogenic) + */ + public float getScore() { + if (pathogenicityScores.isEmpty()) { + return VariantTypePathogenicityScores.NON_PATHOGENIC_SCORE; + } + + PathogenicityScore mostPathogenicPredictedScore = getMostPathogenicScore(); + //Thanks to SIFT being about tolerance rather than pathogenicity, the score is inverted + if (mostPathogenicPredictedScore.getClass() == SiftScore.class) { + return 1 - mostPathogenicPredictedScore.getScore(); + } + return mostPathogenicPredictedScore.getScore(); + } + + + @Override + public int hashCode() { + int hash = 3; + hash = 19 * hash + Objects.hashCode(this.pathogenicityScores); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final PathogenicityData other = (PathogenicityData) obj; + return Objects.equals(this.pathogenicityScores, other.pathogenicityScores); + } + + @Override + public String toString() { + return "PathogenicityData" + pathogenicityScores.values(); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityScore.java new file mode 100644 index 000000000..c78bb91fe --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityScore.java @@ -0,0 +1,32 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +/** + * + * @author Jules Jacobsen + */ +public interface PathogenicityScore extends Comparable { + + float getScore(); + + PathogenicitySource getSource(); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicitySource.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicitySource.java new file mode 100644 index 000000000..bb40c6859 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicitySource.java @@ -0,0 +1,39 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +/** + * Enum representing the pathogenicity prediction method/database used to + * calculate a given score. + * + * @author Jules Jacobsen + */ +public enum PathogenicitySource { + //variant type is from Jannovar + VARIANT_TYPE, + //these guys are calculated from other sources + POLYPHEN, + MUTATION_TASTER, + SIFT, + CADD, + REMM + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PolyPhenScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PolyPhenScore.java new file mode 100644 index 000000000..bd147f8d3 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PolyPhenScore.java @@ -0,0 +1,64 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +/** + * PolyPhen (polymorphism phenotyping) score. + * + * @link http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2855889/?report=classic + * @link http://genetics.bwh.harvard.edu/pph2/ + * + * @author Jules Jacobsen + */ +public final class PolyPhenScore extends BasePathogenicityScore { + + /** + * Possibly damaging is > 0.446 with Polyphen2 (this is an intermediate + * category, thus, we are not being extremely strict with the polyphen + * filter). + */ + public static final float POLYPHEN_THRESHOLD = 0.446f; + + /** + * A polyphen2 score above this threshold is probably damaging + */ + public static final float POLYPHEN_PROB_DAMAGING_THRESHOLD = 0.956f; + + public static PolyPhenScore valueOf(float score) { + return new PolyPhenScore(score); + } + + private PolyPhenScore(float score) { + super(score, PathogenicitySource.POLYPHEN); + } + + @Override + public String toString() { + if (score > POLYPHEN_PROB_DAMAGING_THRESHOLD) { + return String.format("Polyphen2: %.3f (D)", score); + } else if (score > POLYPHEN_THRESHOLD) { + return String.format("Polyphen2: %.3f (P)", score); + } else { + return String.format("Polyphen2: %.3f (B)", score); + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/RemmScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/RemmScore.java new file mode 100644 index 000000000..0fd7a3572 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/RemmScore.java @@ -0,0 +1,43 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +/** + * REMM info - see {@link ...} + * + * @author Jules Jacobsen + */ +public final class RemmScore extends BasePathogenicityScore { + + public static RemmScore valueOf(float score) { + return new RemmScore(score); + } + + private RemmScore(float score) { + super(score, PathogenicitySource.REMM); + } + + @Override + public String toString() { + return String.format("REMM: %.3f", score); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/SiftScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/SiftScore.java new file mode 100644 index 000000000..3e53098fb --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/SiftScore.java @@ -0,0 +1,67 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +/** + * The score is the normalized probability that the amino acid change is + * tolerated. SIFT predicts substitutions with scores less than 0.05 as + * deleterious. Some SIFT users have found that substitutions with scores less + * than 0.1 provide better sensitivity for detecting deleterious SNPs. + * + * Single nucleotide polymorphism (SNP) studies and random mutagenesis projects + * identify amino acid substitutions in protein-coding regions. Each + * substitution has the potential to affect protein function. SIFT (Sorting + * Intolerant From Tolerant) is a program that predicts whether an amino acid + * substitution affects protein function so that users can prioritize + * substitutions for further study. It has been shown that SIFT can distinguish + * between functionally neutral and deleterious amino acid changes in + * mutagenesis studies and on human polymorphisms. SIFT is available at + * {@link http://blocks.fhcrc.org/sift/SIFT.html} + * + * {@link http://www.ncbi.nlm.nih.gov/pmc/articles/PMC168916/} + * + * @author Jules Jacobsen + */ +public final class SiftScore extends BasePathogenicityScore { + + /** + * A SIFT score below this threshold is considered to be pathogenic + */ + public static final float SIFT_THRESHOLD = 0.06f; + + public static SiftScore valueOf(float score) { + return new SiftScore(score); + } + + private SiftScore(float score) { + super(score, PathogenicitySource.SIFT); + } + + @Override + public String toString() { + if (score < SiftScore.SIFT_THRESHOLD) { + return String.format("SIFT: %.3f (D)", score); + } else { + return String.format("SIFT: %.3f (T)", score); + } + } + +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/VariantTypePathogenicityScores.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/VariantTypePathogenicityScores.java similarity index 78% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/VariantTypePathogenicityScores.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/VariantTypePathogenicityScores.java index f97d430f4..87f35a8c2 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/model/pathogenicity/VariantTypePathogenicityScores.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/model/pathogenicity/VariantTypePathogenicityScores.java @@ -1,11 +1,25 @@ + /* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.model.pathogenicity; -import java.util.Collection; +package org.monarchinitiative.exomiser.core.model.pathogenicity; import de.charite.compbio.jannovar.annotation.PutativeImpact; import de.charite.compbio.jannovar.annotation.VariantEffect; diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/CrossSpeciesPhenotypeMatcher.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/CrossSpeciesPhenotypeMatcher.java new file mode 100644 index 000000000..8173748fa --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/CrossSpeciesPhenotypeMatcher.java @@ -0,0 +1,276 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import com.google.common.collect.ImmutableList; +import com.google.common.collect.ImmutableMap; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.*; +import java.util.function.Function; +import java.util.stream.Stream; + +import static java.util.Comparator.comparingDouble; +import static java.util.stream.Collectors.*; + + +/** + * Stores the PhenotypeMatches for a set of query PhenotypeTerms for an Organism. These represent the best possible matches + * a {@link Model} could have. + * + * @author Jules Jacobsen + */ +public class CrossSpeciesPhenotypeMatcher implements PhenotypeMatcher { + + private static final Logger logger = LoggerFactory.getLogger(CrossSpeciesPhenotypeMatcher.class); + + private final Organism organism; + private final Map> termPhenotypeMatches; + + private final QueryPhenotypeMatch queryPhenotypeMatch; + + private final Set matchedOrganismPhenotypeIds; + private final Set matchedQueryPhenotypeIds; + + private final Map mappedTerms; + + /** + * @param organism - The organism for which these PhenotypeMatches are associated. + * @param queryTermPhenotypeMatches - Map of query PhenotypeTerms and their corresponding PhenotypeMatches. If there is no match then an empty Set of PhenotypeMatches is expected. + */ + //TODO: should the constructor simply take the QueryPhenotypeMatch? This is a bit odd as the queryPhenotypeMatch is required externally to this - could then remove getBestPhenotypeMatches and getQueryPhenotypeMatch from the interface? + public CrossSpeciesPhenotypeMatcher(Organism organism, Map> queryTermPhenotypeMatches) { + this.organism = organism; + this.termPhenotypeMatches = ImmutableMap.copyOf(queryTermPhenotypeMatches); + + this.queryPhenotypeMatch = new QueryPhenotypeMatch(this.organism, this.termPhenotypeMatches); + + this.matchedOrganismPhenotypeIds = queryTermPhenotypeMatches + .values().stream() + .flatMap(set -> set.stream().map(PhenotypeMatch::getMatchPhenotypeId)) + .collect(collectingAndThen(toCollection(TreeSet::new), Collections::unmodifiableSet)); + + this.matchedQueryPhenotypeIds = queryTermPhenotypeMatches + .keySet().stream() + .map(PhenotypeTerm::getId) + .collect(collectingAndThen(toCollection(TreeSet::new), Collections::unmodifiableSet)); + + this.mappedTerms = getCompoundKeyIndexedPhenotypeMatches(); + } + + @Override + public Organism getOrganism() { + return organism; + } + + @Override + public List getQueryTerms() { + return ImmutableList.copyOf(termPhenotypeMatches.keySet()); + } + + @Override + public Map> getTermPhenotypeMatches() { + return termPhenotypeMatches; + } + + private Map getCompoundKeyIndexedPhenotypeMatches() { + //'hpId + mpId' : phenotypeMatch + return termPhenotypeMatches.values().stream() + .flatMap(Collection::stream) + .collect(collectingAndThen( + toMap(makeKey(), Function.identity()), + Collections::unmodifiableMap)); + } + + private Function makeKey() { + return match -> String.join("", match.getQueryPhenotypeId() + match.getMatchPhenotypeId()); + } + + /** + * Calculates the best forward and reverse matches for a given set of model phenotypes against the sub-graph of matches + * for the query phenotypes against this organism. The best forward and reverse matches are not necessarily the same. + * @param modelPhenotypes + * @return + */ + @Override + public PhenodigmMatchRawScore matchPhenotypeIds(List modelPhenotypes) { + List matchedModelPhenotypeIds = getMatchingPhenotypes(modelPhenotypes); + + //hpId + Set hpIdsWithPhenotypeMatch = new TreeSet<>(); + for (PhenotypeMatch match : getBestPhenotypeMatches()) { + hpIdsWithPhenotypeMatch.add(match.getQueryPhenotypeId()); + } + + double maxModelMatchScore = 0; + double sumModelBestMatchScores = 0; + + final Map bestPhenotypeMatchForTerms = new LinkedHashMap<>(); + for (String hpId : hpIdsWithPhenotypeMatch) { + double bestMatchScore = 0; + for (String mpId : matchedModelPhenotypeIds) { + String matchIds = hpId + mpId; + if (mappedTerms.containsKey(matchIds)) { + PhenotypeMatch match = mappedTerms.get(matchIds); + double matchScore = match.getScore(); + // identify best match + bestMatchScore = Math.max(matchScore, bestMatchScore); + if (matchScore > 0) { + addMatchIfAbsentOrBetterThanCurrent(match, bestPhenotypeMatchForTerms); + } + } + } + if (bestMatchScore > 0) { + sumModelBestMatchScores += bestMatchScore; + maxModelMatchScore = Math.max(bestMatchScore, maxModelMatchScore); + } + } + // Reciprocal hits + for (String mpId : matchedModelPhenotypeIds) { + double bestMatchScore = 0; + for (String hpId : hpIdsWithPhenotypeMatch) { + String matchIds = hpId + mpId; + if (mappedTerms.containsKey(matchIds)) { + PhenotypeMatch match = mappedTerms.get(matchIds); + double matchScore = match.getScore(); + // identify best match + bestMatchScore = Math.max(matchScore, bestMatchScore); + if (matchScore > 0) { + addMatchIfAbsentOrBetterThanCurrent(match, bestPhenotypeMatchForTerms); + } + } + } + if (bestMatchScore > 0) { + sumModelBestMatchScores += bestMatchScore; + maxModelMatchScore = Math.max(bestMatchScore, maxModelMatchScore); + } + } + + return new PhenodigmMatchRawScore(maxModelMatchScore, sumModelBestMatchScores, matchedModelPhenotypeIds, ImmutableList + .copyOf(bestPhenotypeMatchForTerms.values())); + } + + private void addMatchIfAbsentOrBetterThanCurrent(PhenotypeMatch match, Map bestPhenotypeMatchForTerms) { + PhenotypeTerm matchQueryTerm = match.getQueryPhenotype(); + if (!bestPhenotypeMatchForTerms.containsKey(matchQueryTerm) || bestPhenotypeMatchForTerms.get(matchQueryTerm).getScore() < match.getScore()) { + bestPhenotypeMatchForTerms.put(matchQueryTerm, match); + } + } + + private List getMatchingPhenotypes(List phenotypeIds) { + ImmutableList.Builder matchedPhenotypes = ImmutableList.builder(); + for (String phenotypeId : phenotypeIds) { + if (matchedOrganismPhenotypeIds.contains(phenotypeId)) { + matchedPhenotypes.add(phenotypeId); + } + } + return matchedPhenotypes.build(); + } + + /** + * + * @param modelPhenotypes + * @return + */ + List calculateBestForwardAndReciprocalMatches(List modelPhenotypes) { + List matchedModelPhenotypeIds = modelPhenotypes.stream() + .filter(matchedOrganismPhenotypeIds::contains) + .collect(toList()); + + //loop - 191, 206, 211, 293, 260, 221, 229, 247, 203, 204. (226 ms) + //stream - 1208, 773, 1231, 799, 655, 566, 467, 1037, 792, 722. (825 ms) + //This takes ~0.7 secs compared to ~0.2 secs using the original loop implementation, although it is now returning + //the values. Can it be made faster? Do we care? + List forwardMatches = matchedQueryPhenotypeIds.stream() + .map(hp -> matchedModelPhenotypeIds.stream() + .map(mp -> String.join("", hp, mp)) + .map(mappedTerms::get) + .filter(Objects::nonNull) + .max(comparingDouble(PhenotypeMatch::getScore))) + .filter(Optional::isPresent) + .map(Optional::get) + .collect(toList()); + + //CAUTION!!! This looks very similar to the forward match statement but there are several important differences... + List reciprocalMatches = matchedModelPhenotypeIds.stream() + .map(mp -> matchedQueryPhenotypeIds.stream() + .map(hp -> String.join("", hp, mp)) + .map(mappedTerms::get) + .filter(Objects::nonNull) + .max(comparingDouble(PhenotypeMatch::getScore))) + .filter(Optional::isPresent) + .map(Optional::get) + .collect(toList()); + + return Stream.concat(forwardMatches.stream(), reciprocalMatches.stream()) + .collect(ImmutableList.toImmutableList()); + } + + /** + * Calculates the best PhenotypeMatches grouped by query PhenotypeTerm from the input list of PhenotypeMatches. * + * @param bestForwardAndReciprocalMatches + * @return A list of the best PhenotypeMatches grouped by query PhenotypeTerm from the input list of PhenotypeMatches + */ + List calculateBestPhenotypeMatchesByTerm(List bestForwardAndReciprocalMatches) { + Map> bestOptionalPhenotypeMatchForTerms = bestForwardAndReciprocalMatches.stream() + .collect(groupingBy(PhenotypeMatch::getQueryPhenotype, maxBy(comparingDouble(PhenotypeMatch::getScore)))); + + return bestOptionalPhenotypeMatchForTerms.values().stream() + .filter(Optional::isPresent) + .map(Optional::get) + .collect(toList()); + } + + @Override + public Set getBestPhenotypeMatches() { + return queryPhenotypeMatch.getBestPhenotypeMatches(); + } + + @Override + public QueryPhenotypeMatch getQueryPhenotypeMatch() { + return queryPhenotypeMatch; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof CrossSpeciesPhenotypeMatcher)) return false; + CrossSpeciesPhenotypeMatcher that = (CrossSpeciesPhenotypeMatcher) o; + return organism == that.organism && + Objects.equals(termPhenotypeMatches, that.termPhenotypeMatches); + } + + @Override + public int hashCode() { + return Objects.hash(organism, termPhenotypeMatches); + } + + + @Override + public String toString() { + return "CrossSpeciesPhenotypeMatcher{" + + "organism=" + organism + + ", termPhenotypeMatches=" + termPhenotypeMatches + + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/Model.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/Model.java new file mode 100644 index 000000000..0db0aa793 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/Model.java @@ -0,0 +1,44 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype; + +import java.util.List; + +/** + * Generic interface for defining the phenotype of an entity. In ontology terms this is the associations of an individual + * to a set of ontology classes. + * + * @see ModelScorer + * + * @author Jules Jacobsen + */ +public interface Model { + + String getId(); + + List getPhenotypeIds(); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/ModelPhenotypeMatch.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/ModelPhenotypeMatch.java new file mode 100644 index 000000000..9236546f7 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/ModelPhenotypeMatch.java @@ -0,0 +1,96 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import com.google.common.collect.ImmutableList; + +import java.util.List; +import java.util.Objects; + +/** + * Value class for storing the results of a match between a model and a query. + * + * @author Jules Jacobsen + * @since 8.0.0 + */ +public final class ModelPhenotypeMatch implements Comparable { + + private final double score; + private final Model model; + private final List bestPhenotypeMatches; + + private ModelPhenotypeMatch(double score, Model model, List bestPhenotypeMatches) { + this.score = score; + this.model = model; + this.bestPhenotypeMatches = bestPhenotypeMatches; + } + + public static ModelPhenotypeMatch of(double score, Model model, List bestPhenotypeMatches) { + return new ModelPhenotypeMatch(score, model, ImmutableList.copyOf(bestPhenotypeMatches)); + } + + public double getScore() { + return score; + } + + public Model getModel() { + return model; + } + + public List getBestPhenotypeMatches() { + return bestPhenotypeMatches; + } + + /** + * The natural order of this class is the opposite of the natural numerical order. + * + * @param o + * @return + */ + @Override + public int compareTo(ModelPhenotypeMatch o) { + return -Double.compare(this.score, o.score); + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + ModelPhenotypeMatch that = (ModelPhenotypeMatch) o; + return Double.compare(that.score, score) == 0 && + Objects.equals(model, that.model) && + Objects.equals(bestPhenotypeMatches, that.bestPhenotypeMatches); + } + + @Override + public int hashCode() { + return Objects.hash(score, model, bestPhenotypeMatches); + } + + @Override + public String toString() { + return "ModelPhenotypeMatch{" + + "score=" + score + + ", model=" + model + + ", bestPhenotypeMatches=" + bestPhenotypeMatches + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/ModelScorer.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/ModelScorer.java new file mode 100644 index 000000000..525468cc6 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/ModelScorer.java @@ -0,0 +1,31 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +/** + * @author Jules Jacobsen + */ +@FunctionalInterface +public interface ModelScorer { + + ModelPhenotypeMatch scoreModel(Model model); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/Organism.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/Organism.java new file mode 100644 index 000000000..5c669f027 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/Organism.java @@ -0,0 +1,41 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype; + +/** + * Enum representing the model organism present in the Exomiser database for which + * there are phenotype mappings. These are few and should not be added to + * frequently. + * + * @author Jules Jacobsen + */ +public enum Organism { + + HUMAN, + MOUSE, + FISH + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmMatchRawScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmMatchRawScore.java new file mode 100644 index 000000000..7928ac5b5 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmMatchRawScore.java @@ -0,0 +1,87 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import java.util.List; +import java.util.Objects; + +/** + * DTO class for transferring data from {@link PhenotypeMatcher} to {@link PhenodigmModelScorer}. + * + * @since 8.0.0 + * @author Jules Jacobsen + */ +public class PhenodigmMatchRawScore { + + private double maxModelMatchScore; + private double sumModelBestMatchScores; + private List matchingPhenotypes; + private List bestPhenotypeMatches; + + PhenodigmMatchRawScore(double maxModelMatchScore, double sumModelBestMatchScores, List matchingPhenotypes, List bestPhenotypeMatches) { + this.maxModelMatchScore = maxModelMatchScore; + this.sumModelBestMatchScores = sumModelBestMatchScores; + this.matchingPhenotypes = matchingPhenotypes; + this.bestPhenotypeMatches = bestPhenotypeMatches; + } + + double getMaxModelMatchScore() { + return maxModelMatchScore; + } + + double getSumModelBestMatchScores() { + return sumModelBestMatchScores; + } + + List getMatchingPhenotypes() { + return matchingPhenotypes; + } + + List getBestPhenotypeMatches() { + return bestPhenotypeMatches; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + PhenodigmMatchRawScore that = (PhenodigmMatchRawScore) o; + return Double.compare(that.maxModelMatchScore, maxModelMatchScore) == 0 && + Double.compare(that.sumModelBestMatchScores, sumModelBestMatchScores) == 0 && + Objects.equals(matchingPhenotypes, that.matchingPhenotypes) && + Objects.equals(bestPhenotypeMatches, that.bestPhenotypeMatches); + } + + @Override + public int hashCode() { + return Objects.hash(maxModelMatchScore, sumModelBestMatchScores, matchingPhenotypes, bestPhenotypeMatches); + } + + @Override + public String toString() { + return "PhenodigmMatchRawScore{" + + "maxModelMatchScore=" + maxModelMatchScore + + ", sumModelBestMatchScores=" + sumModelBestMatchScores + + ", matchingPhenotypes=" + matchingPhenotypes + + ", bestPhenotypeMatches=" + bestPhenotypeMatches + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmModelScorer.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmModelScorer.java new file mode 100644 index 000000000..5236a0732 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmModelScorer.java @@ -0,0 +1,196 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Comparator; +import java.util.Map; +import java.util.Objects; +import java.util.Set; + +/** + * Class implementing the Phenodigm (PHENOtype comparisons for DIsease Genes and Models) algorithm for scoring the + * semantic similarity of a model against the best theoretical model for a set of phenotypes in a given organism. + * See original publication here - https://doi.org/10.1093/database/bat025 + * + * @since 8.0.0 + * @author Jules Jacobsen + */ +public class PhenodigmModelScorer implements ModelScorer { + + private static final Logger logger = LoggerFactory.getLogger(PhenodigmModelScorer.class); + + private final double theoreticalMaxMatchScore; + private final double theoreticalBestAvgScore; + + private final PhenotypeMatcher organismPhenotypeMatcher; + private final int numQueryPhenotypes; + + /** + * Use this constructor when running a single (HP-HP) or single cross-species (e.g. HP-MP) comparisons. + * For multi cross-species comparisons use the constructor which requires the {@link QueryPhenotypeMatch} against which + * all models are compared. + * + * @param organismPhenotypeMatcher the best phenotype matches for this organism e.g. HP-HP, HP-MP or HP-MP + * @param numQueryPhenotypes + */ + private PhenodigmModelScorer(PhenotypeMatcher organismPhenotypeMatcher, int numQueryPhenotypes) { + this(organismPhenotypeMatcher.getQueryPhenotypeMatch(), organismPhenotypeMatcher, numQueryPhenotypes); + } + + /** + * Use this constructor when running multi cross-species comparisons. For single or single cross-species comparisons, + * use the alternate constructor. + * + * @param queryPhenotypeMatch against which all models are compared. + * @param organismPhenotypeMatcher the best phenotype matches for this organism e.g. HP-HP, HP-MP or HP-MP + * @param numQueryPhenotypes + */ + private PhenodigmModelScorer(QueryPhenotypeMatch queryPhenotypeMatch, PhenotypeMatcher organismPhenotypeMatcher, int numQueryPhenotypes) { + this.theoreticalMaxMatchScore = queryPhenotypeMatch.getMaxMatchScore(); + this.theoreticalBestAvgScore = queryPhenotypeMatch.getBestAvgScore(); + + this.organismPhenotypeMatcher = organismPhenotypeMatcher; + this.numQueryPhenotypes = numQueryPhenotypes; + logOrganismPhenotypeMatches(); + } + + /** + * Produces a {@link ModelScorer} which will score human models only, e.g. disease models or individuals where + * their phenotypes are encoded using HPO terms. + * + * @param phenotypeMatcher The HP to HP PhenotypeMatches for the query Phenotypes. + */ + public static PhenodigmModelScorer forSameSpecies(PhenotypeMatcher phenotypeMatcher) { + int numQueryPhenotypes = phenotypeMatcher.getQueryTerms().size(); + return new PhenodigmModelScorer(phenotypeMatcher, numQueryPhenotypes); + } + + /** + * Produces a {@link ModelScorer} which will score models between human and a single other species. Requires an + * {@link PhenotypeMatcher} for the relevant organism i.e. mouse or fish. + * + * @param phenotypeMatcher The HP to MP/ZP PhenotypeMatches for the query Phenotypes. + */ + public static PhenodigmModelScorer forSingleCrossSpecies(PhenotypeMatcher phenotypeMatcher) { + int numQueryPhenotypes = phenotypeMatcher.getBestPhenotypeMatches().size(); + return new PhenodigmModelScorer(phenotypeMatcher, numQueryPhenotypes); + } + + /** + * Produces a {@link ModelScorer} which will score models across multiple species. This requires a reference + * species (human) so that the scores are scaled correctly across the species. + * + * @param referenceOrganismQueryPhenotypeMatch {@link QueryPhenotypeMatch} for the reference organism - this should be for the HP-HP hits. + * @param phenotypeMatcher the {@link PhenotypeMatcher} for the relevant organism i.e. HP-HP, HP-MP or HP-ZP matches. + */ + public static PhenodigmModelScorer forMultiCrossSpecies(QueryPhenotypeMatch referenceOrganismQueryPhenotypeMatch, PhenotypeMatcher phenotypeMatcher) { + int numQueryPhenotypes = referenceOrganismQueryPhenotypeMatch.getQueryTerms().size(); + return new PhenodigmModelScorer(referenceOrganismQueryPhenotypeMatch, phenotypeMatcher, numQueryPhenotypes); + } + + private void logOrganismPhenotypeMatches() { + logger.info("Best {} phenotype matches:", organismPhenotypeMatcher.getOrganism()); + Map> termPhenotypeMatches = organismPhenotypeMatcher.getTermPhenotypeMatches(); + for (Map.Entry> entry : termPhenotypeMatches.entrySet()) { + PhenotypeTerm queryTerm = entry.getKey(); + Set matches = entry.getValue(); + if (matches.isEmpty()) { + logger.info("{}-NOT MATCHED", queryTerm.getId()); + } else { + PhenotypeMatch bestMatch = matches.stream() + .max(Comparator.comparingDouble(PhenotypeMatch::getScore)) + .get(); + logger.info("{}-{}={}", queryTerm.getId(), bestMatch.getMatchPhenotypeId(), bestMatch.getScore()); + } + } + QueryPhenotypeMatch organismQueryPhenotypeMatch = organismPhenotypeMatcher.getQueryPhenotypeMatch(); + logger.info("bestMaxScore={} bestAvgScore={}", organismQueryPhenotypeMatch.getMaxMatchScore(), organismQueryPhenotypeMatch + .getBestAvgScore()); + } + + @Override + public ModelPhenotypeMatch scoreModel(Model model) { + PhenodigmMatchRawScore rawModelScore = organismPhenotypeMatcher.matchPhenotypeIds(model.getPhenotypeIds()); + double score = calculateCombinedScore(rawModelScore); + return ModelPhenotypeMatch.of(score, model, rawModelScore.getBestPhenotypeMatches()); + } + + private double calculateCombinedScore(PhenodigmMatchRawScore rawModelScore) { + double maxModelMatchScore = rawModelScore.getMaxModelMatchScore(); + double sumModelBestMatchScores = rawModelScore.getSumModelBestMatchScores(); + int numMatchingPhenotypesForModel = rawModelScore.getMatchingPhenotypes().size(); + + /* + * hpIdsWithPhenotypeMatch.size() = no. of HPO disease annotations for human and the no. of annotations with an entry in hp_*_mappings table for other species + * matchedPhenotypeIDsForModel.size() = no. of annotations for model with a match in hp_*_mappings table for at least one of the disease annotations + * Aug 2015 - changed calculation to take into account all HPO terms for averaging after DDD benchmarking - keeps consistent across species then + */ + //int rowColumnCount = hpIdsWithPhenotypeMatch.size() + matchedPhenotypeIdsForModel.size(); + + /* + * In order to have a strict symmetrical comparison all the query and model phenotypes in the HP-MP table should be taken into account (these are the significant matches) + * so we should be using something close to totalPhenotypes = numQueryPhenotypes + numModelPhenotypes, however in the benchmarking it became apparent that + * models with large numbers of phenotypes (e.g. 40+) performed badly compared to models with smaller number when matched against a small query. So we have + * implemented a sort of semi-symmetrical comparison which only takes into account the model terms matching those in the query HP-MP subsets. + */ + + int totalPhenotypesWithMatch = numQueryPhenotypes + numMatchingPhenotypesForModel; + if (sumModelBestMatchScores > 0) { + double modelBestAvgScore = sumModelBestMatchScores / totalPhenotypesWithMatch; + // calculate combined score + double combinedScore = 50 * (maxModelMatchScore / theoreticalMaxMatchScore + modelBestAvgScore / theoreticalBestAvgScore); + if (combinedScore > 100) { + combinedScore = 100; + } + return combinedScore / 100; + } + return 0; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + PhenodigmModelScorer that = (PhenodigmModelScorer) o; + return Double.compare(that.theoreticalMaxMatchScore, theoreticalMaxMatchScore) == 0 && + Double.compare(that.theoreticalBestAvgScore, theoreticalBestAvgScore) == 0 && + numQueryPhenotypes == that.numQueryPhenotypes && + Objects.equals(organismPhenotypeMatcher, that.organismPhenotypeMatcher); + } + + @Override + public int hashCode() { + return Objects.hash(theoreticalMaxMatchScore, theoreticalBestAvgScore, organismPhenotypeMatcher, numQueryPhenotypes); + } + + @Override + public String toString() { + return "PhenodigmModelScorer{" + + "theoreticalMaxMatchScore=" + theoreticalMaxMatchScore + + ", theoreticalBestAvgScore=" + theoreticalBestAvgScore + + ", organismPhenotypeMatcher=" + organismPhenotypeMatcher + + ", numQueryPhenotypes=" + numQueryPhenotypes + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatch.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatch.java new file mode 100644 index 000000000..6d19c15e1 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatch.java @@ -0,0 +1,177 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this template, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype; + +import com.fasterxml.jackson.annotation.JsonCreator; +import com.fasterxml.jackson.annotation.JsonIgnore; +import com.fasterxml.jackson.annotation.JsonProperty; +import com.fasterxml.jackson.annotation.JsonPropertyOrder; + +import java.util.Objects; + +/** + * Contains information about how well a pair of PhenotypeTerm + * match each other. + * + * @author Jules Jacobsen + */ +@JsonPropertyOrder({"query", "match", "lcs", "ic", "simj", "score"}) +public final class PhenotypeMatch { + + private final PhenotypeTerm matchPhenotype; + private final PhenotypeTerm queryPhenotype; + //lowest common subsumer + private final PhenotypeTerm lcs; + //Jaccard similarity score + private final double ic; + private final double simJ; + private final double score; + + public PhenotypeMatch(Builder builder) { + this.matchPhenotype = builder.matchPhenotype; + this.queryPhenotype = builder.queryPhenotype; + this.ic = builder.ic; + this.lcs = builder.lcs; + this.simJ = builder.simJ; + this.score = builder.score; + } + + @JsonIgnore + public String getQueryPhenotypeId() { + return (queryPhenotype == null) ? "null" : queryPhenotype.getId(); + } + + @JsonProperty("query") + public PhenotypeTerm getQueryPhenotype() { + return queryPhenotype; + } + + @JsonIgnore + public String getMatchPhenotypeId() { + return (matchPhenotype == null) ? "null" : matchPhenotype.getId(); + } + + @JsonProperty("match") + public PhenotypeTerm getMatchPhenotype() { + return matchPhenotype; + } + + @JsonProperty("lcs") + public PhenotypeTerm getLcs() { + return lcs; + } + + @JsonProperty("ic") + public double getIc() { + return ic; + } + + @JsonProperty("simj") + public double getSimJ() { + return simJ; + } + + @JsonProperty("score") + public double getScore() { + return score; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof PhenotypeMatch)) return false; + PhenotypeMatch that = (PhenotypeMatch) o; + return Double.compare(that.ic, ic) == 0 && + Double.compare(that.simJ, simJ) == 0 && + Double.compare(that.score, score) == 0 && + Objects.equals(matchPhenotype, that.matchPhenotype) && + Objects.equals(queryPhenotype, that.queryPhenotype) && + Objects.equals(lcs, that.lcs); + } + + @Override + public int hashCode() { + return Objects.hash(matchPhenotype, queryPhenotype, lcs, ic, simJ, score); + } + + @Override + public String toString() { + return "PhenotypeMatch{" + "matchPhenotype=" + matchPhenotype + ", queryPhenotype=" + queryPhenotype + ", lcs=" + lcs + ", simJ=" + simJ + ", score=" + score + '}'; + } + + @JsonCreator + public static Builder builder() { + return new Builder(); + } + + public static class Builder { + private PhenotypeTerm queryPhenotype; + private PhenotypeTerm matchPhenotype; + //lowest common subsumer + private PhenotypeTerm lcs; + //information content (relates to LCS) + private double ic; + //Jaccard similarity score + private double simJ; + private double score; + + private Builder() { + } + + public Builder query(PhenotypeTerm queryPhenotype) { + this.queryPhenotype = queryPhenotype; + return this; + } + + public Builder match(PhenotypeTerm matchPhenotype) { + this.matchPhenotype = matchPhenotype; + return this; + } + + public Builder lcs(PhenotypeTerm lcs) { + this.lcs = lcs; + return this; + } + + public Builder ic(double ic) { + this.ic = ic; + return this; + } + + public Builder simj(double simJ) { + this.simJ = simJ; + return this; + } + + public Builder score(double score) { + this.score = score; + return this; + } + + public PhenotypeMatch build() { + return new PhenotypeMatch(this); + } + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchService.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchService.java new file mode 100644 index 000000000..87f48e63a --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchService.java @@ -0,0 +1,96 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import com.google.common.collect.ImmutableMap; +import org.monarchinitiative.exomiser.core.phenotype.service.OntologyService; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Service; + +import java.util.*; + +import static java.util.stream.Collectors.toList; + +/** + * Service for generating the best phenotypic matches for a given set of HPO terms against human, mouse or fish + * ontologies. The matches are produced from Phenodigm data which computed the scores using OwlSim. + * + * @author Jules Jacobsen + * @since 8.0.0 + */ +@Service +public class PhenotypeMatchService { + + Logger logger = LoggerFactory.getLogger(PhenotypeMatchService.class); + + private final OntologyService ontologyService; + + @Autowired + public PhenotypeMatchService(OntologyService ontologyService) { + Objects.requireNonNull(ontologyService, "ontologyService cannot be null"); + this.ontologyService = ontologyService; + } + + public PhenotypeMatcher getHumanPhenotypeMatcherForTerms(List hpoPhenotypeTerms) { + return getOrganismPhenotypeMatcherFromTerms(hpoPhenotypeTerms, Organism.HUMAN); + } + + public PhenotypeMatcher getMousePhenotypeMatcherForTerms(List hpoPhenotypeTerms) { + return getOrganismPhenotypeMatcherFromTerms(hpoPhenotypeTerms, Organism.MOUSE); + } + + public PhenotypeMatcher getFishPhenotypeMatcherForTerms(List hpoPhenotypeTerms) { + return getOrganismPhenotypeMatcherFromTerms(hpoPhenotypeTerms, Organism.FISH); + } + + private PhenotypeMatcher getOrganismPhenotypeMatcherFromTerms(List queryHpoPhenotypes, Organism organism) { + logger.info("Fetching HUMAN-{} phenotype matches...", organism); + Map> speciesPhenotypeMatches = new LinkedHashMap<>(); + for (PhenotypeTerm hpoTerm : queryHpoPhenotypes) { + Set termMatches = getSpeciesMatchesForHpoTerm(hpoTerm, organism); + speciesPhenotypeMatches.put(hpoTerm, termMatches); + } + return new CrossSpeciesPhenotypeMatcher(organism, ImmutableMap.copyOf(speciesPhenotypeMatches)); + } + + public List makePhenotypeTermsFromHpoIds(List hpoIds) { + return hpoIds.stream() + .map(ontologyService::getPhenotypeTermForHpoId) + .filter(Objects::nonNull) + .collect(toList()); + } + + private Set getSpeciesMatchesForHpoTerm(PhenotypeTerm hpoTerm, Organism species) { + switch (species) { + case HUMAN: + return ontologyService.getHpoMatchesForHpoTerm(hpoTerm); + case MOUSE: + return ontologyService.getMpoMatchesForHpoTerm(hpoTerm); + case FISH: + return ontologyService.getZpoMatchesForHpoTerm(hpoTerm); + default: + return Collections.emptySet(); + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatcher.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatcher.java new file mode 100644 index 000000000..665d33999 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatcher.java @@ -0,0 +1,43 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import java.util.List; +import java.util.Map; +import java.util.Set; + +/** + * @author Jules Jacobsen + */ +public interface PhenotypeMatcher { + + PhenodigmMatchRawScore matchPhenotypeIds(List phenotypeIds); + + Organism getOrganism(); + + List getQueryTerms(); + + Map> getTermPhenotypeMatches(); + + Set getBestPhenotypeMatches(); + + QueryPhenotypeMatch getQueryPhenotypeMatch(); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeTerm.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeTerm.java new file mode 100644 index 000000000..cd46ebb5e --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeTerm.java @@ -0,0 +1,109 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this template, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype; + +import com.fasterxml.jackson.annotation.JsonCreator; +import com.fasterxml.jackson.annotation.JsonIgnore; +import com.fasterxml.jackson.annotation.JsonProperty; + +import java.util.Objects; + +/** + * Represents a phenotype term from a phenotype ontology - e.g. the HPO, MPO, ZPO... + * @author Jules Jacobsen + */ +public final class PhenotypeTerm implements Comparable { + + private enum Status { + PRESENT, NOT_PRESENT + } + + private final String id; + private final String label; + + @JsonIgnore + private final Status status; + + private PhenotypeTerm(String id, String label, Status status) { + this.id = id; + this.label = label; + this.status = status; + } + + @JsonProperty + public String getId() { + return id; + } + + @JsonProperty + public String getLabel() { + return label; + } + + @JsonIgnore + public boolean isPresent() { + return status == Status.PRESENT; + } + + @JsonIgnore + public boolean notPresent() { + return status == Status.NOT_PRESENT; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof PhenotypeTerm)) return false; + PhenotypeTerm that = (PhenotypeTerm) o; + return Objects.equals(id, that.id) && + Objects.equals(label, that.label) && + status == that.status; + } + + @Override + public int hashCode() { + return Objects.hash(id, label, status); + } + + @Override + public int compareTo(PhenotypeTerm o) { + return this.id.compareTo(o.id); + } + + @Override + public String toString() { + return "PhenotypeTerm{" + "id=" + id + ", label=" + label + ", present=" + isPresent() +'}'; + } + + @JsonCreator + public static PhenotypeTerm of(String id, String label) { + return new PhenotypeTerm(id, label, Status.PRESENT); + } + + public static PhenotypeTerm notOf(String id, String label) { + return new PhenotypeTerm(id, label, Status.NOT_PRESENT); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/QueryPhenotypeMatch.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/QueryPhenotypeMatch.java new file mode 100644 index 000000000..7f988cb8a --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/QueryPhenotypeMatch.java @@ -0,0 +1,122 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import com.google.common.collect.ImmutableList; +import com.google.common.collect.ImmutableSet; + +import java.util.*; +import java.util.function.Function; + +/** + * @author Jules Jacobsen + */ +public class QueryPhenotypeMatch { + + private final Organism organism; + + private final List queryTerms; + private final Set bestPhenotypeMatches; + private final double theoreticalMaxMatchScore; + private final double theoreticalBestAvgScore; + + QueryPhenotypeMatch(Organism organism, Map> queryTermPhenotypeMatches) { + this.organism = organism; + this.queryTerms = ImmutableList.copyOf(queryTermPhenotypeMatches.keySet()); + this.bestPhenotypeMatches = makeBestPhenotypeMatches(queryTermPhenotypeMatches); + this.theoreticalMaxMatchScore = bestPhenotypeMatches.stream().mapToDouble(PhenotypeMatch::getScore).max().orElse(0d); + this.theoreticalBestAvgScore = calculateBestAverageScore(bestPhenotypeMatches, queryTermPhenotypeMatches.keySet() + .size()); + } + + //calculates the average score of the best phenotype matches over all of query phenotypes, not just those with matches. + private double calculateBestAverageScore(Set bestPhenotypeMatches, int numQueryPhenotypes) { + if (bestPhenotypeMatches.isEmpty()) { + // otherwise get a NaN value that escalates to other scores and eventually throws an exception + return 0; + } + return bestPhenotypeMatches.stream().mapToDouble(PhenotypeMatch::getScore).sum() / numQueryPhenotypes; + } + + private Set makeBestPhenotypeMatches(Map> termPhenotypeMatches) { + return termPhenotypeMatches.values() + .stream() + .map(bestPhenotypeMatch()) + .filter(Objects::nonNull) + .collect(ImmutableSet.toImmutableSet()); + } + + /** + * Finds the best PhenotypeMatch for that phenotype term. This is the one with the highest score. OR returns a null + */ + private Function, PhenotypeMatch> bestPhenotypeMatch() { + return phenotypeMatches -> phenotypeMatches.stream() + .sorted(Comparator.comparingDouble(PhenotypeMatch::getScore).reversed()) + .findFirst() + .orElse(null); + } + + public Organism getOrganism() { + return organism; + } + + public List getQueryTerms() { + return queryTerms; + } + + public Set getBestPhenotypeMatches() { + return bestPhenotypeMatches; + } + + public double getMaxMatchScore() { + return theoreticalMaxMatchScore; + } + + public double getBestAvgScore() { + return theoreticalBestAvgScore; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof QueryPhenotypeMatch)) return false; + QueryPhenotypeMatch that = (QueryPhenotypeMatch) o; + return Double.compare(that.theoreticalMaxMatchScore, theoreticalMaxMatchScore) == 0 && + Double.compare(that.theoreticalBestAvgScore, theoreticalBestAvgScore) == 0 && + organism == that.organism && + Objects.equals(bestPhenotypeMatches, that.bestPhenotypeMatches); + } + + @Override + public int hashCode() { + return Objects.hash(organism, bestPhenotypeMatches, theoreticalMaxMatchScore, theoreticalBestAvgScore); + } + + @Override + public String toString() { + return "QueryPhenotypeMatch{" + + "organism=" + organism + + ", bestPhenotypeMatches=" + bestPhenotypeMatches + + ", bestMatchScore=" + theoreticalMaxMatchScore + + ", bestAverageScore=" + theoreticalBestAvgScore + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/HumanPhenotypeOntologyDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/HumanPhenotypeOntologyDao.java new file mode 100644 index 000000000..bc0fd92ae --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/HumanPhenotypeOntologyDao.java @@ -0,0 +1,92 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.dao; + +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Repository; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.Collections; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +@Repository +public class HumanPhenotypeOntologyDao implements OntologyDao { + + private static final Logger logger = LoggerFactory.getLogger(HumanPhenotypeOntologyDao.class); + + private final DataSource dataSource; + + @Autowired + public HumanPhenotypeOntologyDao(DataSource dataSource) { + this.dataSource = dataSource; + } + + @Override + public Set getAllTerms() { + String query = "select id, lcname as term from hpo"; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement ontologyTermsStatement = connection.prepareStatement(query); + ResultSet rs = ontologyTermsStatement.executeQuery()) { + + return OntologyDaoResultSetProcessor.processOntologyTermsResultSet(rs); + + } catch (SQLException e) { + logger.error("Unable to execute query '{}' for HPO terms", query, e); + } + return Collections.emptySet(); + } + + @Override + public Set getPhenotypeMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + String mappingQuery = "SELECT simj, ic, score, hp_id_hit AS hit_id, hp_hit_term AS hit_term, lcs_id, lcs_term FROM hp_hp_mappings WHERE hp_id = ?"; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement ps = PreparedStatementSetter.prepareStatement(connection, mappingQuery, setter -> setter + .setString(1, hpoTerm.getId())); + ResultSet rs = ps.executeQuery()) { + + return OntologyDaoResultSetProcessor.processOntologyTermMatchResultSet(rs, hpoTerm); + + } catch (SQLException e) { + logger.error("Unable to execute query '{}' for HP-HP match terms", mappingQuery, e); + } + return Collections.emptySet(); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/MousePhenotypeOntologyDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/MousePhenotypeOntologyDao.java new file mode 100644 index 000000000..47ee1e075 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/MousePhenotypeOntologyDao.java @@ -0,0 +1,93 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.dao; + +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Repository; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.Collections; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +@Repository +public class MousePhenotypeOntologyDao implements OntologyDao { + + private static final Logger logger = LoggerFactory.getLogger(MousePhenotypeOntologyDao.class); + + private final DataSource dataSource; + + @Autowired + public MousePhenotypeOntologyDao(DataSource dataSource) { + this.dataSource = dataSource; + } + + @Override + public Set getAllTerms() { + String query = "SELECT mp_id as id, mp_term as term FROM mp"; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement ontologyTermsStatement = connection.prepareStatement(query); + ResultSet rs = ontologyTermsStatement.executeQuery()) { + + return OntologyDaoResultSetProcessor.processOntologyTermsResultSet(rs); + + } catch (SQLException e) { + logger.error("Unable to execute query '{}' for MPO terms", query, e); + } + return Collections.emptySet(); + } + + @Override + public Set getPhenotypeMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + String mappingQuery = "SELECT simj, ic, score, mp_id AS hit_id, mp_term AS hit_term, lcs_id, lcs_term FROM hp_mp_mappings WHERE hp_id = ?"; + + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement ps = PreparedStatementSetter.prepareStatement(connection, mappingQuery, setter -> setter + .setString(1, hpoTerm.getId())); + ResultSet rs = ps.executeQuery()) { + + return OntologyDaoResultSetProcessor.processOntologyTermMatchResultSet(rs, hpoTerm); + + } catch (SQLException e) { + logger.error("Unable to execute query '{}' for HP-MP match terms", mappingQuery, e); + } + return Collections.emptySet(); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/OntologyDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/OntologyDao.java new file mode 100644 index 000000000..d171f9894 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/OntologyDao.java @@ -0,0 +1,42 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.dao; + +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; + +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public interface OntologyDao { + + Set getAllTerms(); + + Set getPhenotypeMatchesForHpoTerm(PhenotypeTerm hpoTerm); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/OntologyDaoResultSetProcessor.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/OntologyDaoResultSetProcessor.java new file mode 100644 index 000000000..bad4cbc8d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/OntologyDaoResultSetProcessor.java @@ -0,0 +1,87 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.dao; + +import com.google.common.collect.ImmutableSet; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; + +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.Set; + +/** + * Common class for processing results sets from ontology tables - these are all + * of the form id:term for each species. + * + * @author Jules Jacobsen + */ +class OntologyDaoResultSetProcessor { + + private OntologyDaoResultSetProcessor() { + } + + static Set processOntologyTermsResultSet(ResultSet rs) throws SQLException { + ImmutableSet.Builder termsCache = ImmutableSet.builder(); + while (rs.next()) { + String id = rs.getString("id"); + String term = rs.getString("term"); + id = id.trim(); + PhenotypeTerm phenotypeTerm = PhenotypeTerm.of(id, term); + termsCache.add(phenotypeTerm); + } + return termsCache.build(); + } + + static Set processOntologyTermMatchResultSet(ResultSet rs, PhenotypeTerm queryPhenotype) throws SQLException { + ImmutableSet.Builder phenotypeMatches = ImmutableSet.builder(); + while (rs.next()) { + //simj, ic, score, hp_id_hit AS hit_id, hp_hit_term AS hit_term, lcs_id, lcs_term + String matchId = rs.getString("hit_id"); + String matchTerm = rs.getString("hit_term"); + PhenotypeTerm matchPhenotype = PhenotypeTerm.of(matchId, matchTerm); + + String lcsId = rs.getString("lcs_id"); + String lcsTerm = rs.getString("lcs_term"); + PhenotypeTerm lcsPhenotype = PhenotypeTerm.of(lcsId, lcsTerm); + + double ic = rs.getDouble("ic"); + double simj = rs.getDouble("simj"); + double score = rs.getDouble("score"); + PhenotypeMatch match = PhenotypeMatch.builder() + .query(queryPhenotype) + .match(matchPhenotype) + .lcs(lcsPhenotype) + .simj(simj) + .ic(ic) + .score(score) + .build(); + phenotypeMatches.add(match); + } + return phenotypeMatches.build(); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/PreparedStatementSetter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/PreparedStatementSetter.java new file mode 100644 index 000000000..8884747a9 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/PreparedStatementSetter.java @@ -0,0 +1,43 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype.dao; + +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.SQLException; + +/** + * Non-spring dependent version of PreparedStatementSetter {@see http://docs.spring.io/spring/docs/current/javadoc-api/org/springframework/jdbc/core/PreparedStatementSetter.html} + * Code borrowed from {@see http://stackoverflow.com/a/33706394} + * + * @author Jules Jacobsen + */ +@FunctionalInterface +public interface PreparedStatementSetter { + + void setValues(PreparedStatement ps) throws SQLException; + + static PreparedStatement prepareStatement(Connection connection, String sql, PreparedStatementSetter setter) throws SQLException { + PreparedStatement ps = connection.prepareStatement(sql); + setter.setValues(ps); + return ps; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/ZebraFishPhenotypeOntologyDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/ZebraFishPhenotypeOntologyDao.java new file mode 100644 index 000000000..b5968ac56 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/dao/ZebraFishPhenotypeOntologyDao.java @@ -0,0 +1,92 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.dao; + +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Repository; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.Collections; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +@Repository +public class ZebraFishPhenotypeOntologyDao implements OntologyDao { + + private static final Logger logger = LoggerFactory.getLogger(ZebraFishPhenotypeOntologyDao.class); + + private final DataSource dataSource; + + @Autowired + public ZebraFishPhenotypeOntologyDao(DataSource dataSource) { + this.dataSource = dataSource; + } + + @Override + public Set getAllTerms() { + String query = "SELECT zp_id as id, zp_term as term FROM zp"; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement ontologyTermsStatement = connection.prepareStatement(query); + ResultSet rs = ontologyTermsStatement.executeQuery()) { + + return OntologyDaoResultSetProcessor.processOntologyTermsResultSet(rs); + + } catch (SQLException e) { + logger.error("Unable to execute query '{}' for ZPO terms", query, e); + } + return Collections.emptySet(); + } + + @Override + public Set getPhenotypeMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + String mappingQuery = "SELECT simj, ic, score, zp_id AS hit_id, zp_term AS hit_term, lcs_id, lcs_term FROM hp_zp_mappings WHERE hp_id = ?"; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement ps = PreparedStatementSetter.prepareStatement(connection, mappingQuery, setter -> setter + .setString(1, hpoTerm.getId())); + ResultSet rs = ps.executeQuery()) { + + return OntologyDaoResultSetProcessor.processOntologyTermMatchResultSet(rs, hpoTerm); + + } catch (SQLException e) { + logger.error("Unable to execute query '{}' for HP-ZP match terms", mappingQuery, e); + } + return Collections.emptySet(); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyService.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyService.java new file mode 100644 index 000000000..26b116e67 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyService.java @@ -0,0 +1,54 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.service; + +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; + +import java.util.Set; + +/** + * Service for retrieving phenotype data from the database for use by the + * prioritisers. + * + * @author Jules Jacobsen + */ +public interface OntologyService { + + Set getHpoTerms(); + + Set getMpoTerms(); + + Set getZpoTerms(); + + Set getHpoMatchesForHpoTerm(PhenotypeTerm hpoTerm); + + Set getMpoMatchesForHpoTerm(PhenotypeTerm hpoTerm); + + Set getZpoMatchesForHpoTerm(PhenotypeTerm hpoTerm); + + PhenotypeTerm getPhenotypeTermForHpoId(String hpoId); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyServiceImpl.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyServiceImpl.java new file mode 100644 index 000000000..cd478f98e --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyServiceImpl.java @@ -0,0 +1,109 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.service; + +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.phenotype.dao.HumanPhenotypeOntologyDao; +import org.monarchinitiative.exomiser.core.phenotype.dao.MousePhenotypeOntologyDao; +import org.monarchinitiative.exomiser.core.phenotype.dao.ZebraFishPhenotypeOntologyDao; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.stereotype.Service; + +import java.util.Set; + +/** + * Service for retrieving phenotype data from the database for use by the + * prioritisers. This class is complemented by the PriorityService. + * + * @author Jules Jacobsen + */ +@Service +public class OntologyServiceImpl implements OntologyService { + + private final HumanPhenotypeOntologyDao hpoDao; + private final MousePhenotypeOntologyDao mpoDao; + private final ZebraFishPhenotypeOntologyDao zpoDao; + + @Autowired + public OntologyServiceImpl(HumanPhenotypeOntologyDao hpoDao, MousePhenotypeOntologyDao mpoDao, ZebraFishPhenotypeOntologyDao zpoDao) { + this.hpoDao = hpoDao; + this.mpoDao = mpoDao; + this.zpoDao = zpoDao; + } + + @Cacheable(value = "hpo") + @Override + public Set getHpoTerms() { + return hpoDao.getAllTerms(); + } + + @Cacheable(value = "mpo") + @Override + public Set getMpoTerms() { + return mpoDao.getAllTerms(); + } + + @Cacheable(value = "zpo") + @Override + public Set getZpoTerms() { + return zpoDao.getAllTerms(); + } + + @Override + public Set getHpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + return hpoDao.getPhenotypeMatchesForHpoTerm(hpoTerm); + } + + @Override + public Set getMpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + return mpoDao.getPhenotypeMatchesForHpoTerm(hpoTerm); + } + + @Override + public Set getZpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + return zpoDao.getPhenotypeMatchesForHpoTerm(hpoTerm); + } + + /** + * Returns the matching HPO PhenotypeTerm for a given HPO id or null if the + * term cannot be found. + * + * @param hpoId + * @return + */ + @Override + public PhenotypeTerm getPhenotypeTermForHpoId(String hpoId) { + for (PhenotypeTerm hpoTerm : getHpoTerms()) { + if (hpoTerm.getId().equals(hpoId)) { + return hpoTerm; + } + } + return null; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/AbstractPriorityResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/AbstractPriorityResult.java new file mode 100644 index 000000000..021741238 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/AbstractPriorityResult.java @@ -0,0 +1,88 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import java.util.Objects; + +/** + * @author Jules Jacobsen + */ +abstract class AbstractPriorityResult implements PriorityResult { + + private final PriorityType priorityType; + + final int geneId; + final String geneSymbol; + final double score; + + AbstractPriorityResult(PriorityType priorityType, int geneId, String geneSymbol, double score) { + this.priorityType = priorityType; + this.geneId = geneId; + this.geneSymbol = geneSymbol; + this.score = score; + } + + @Override + public PriorityType getPriorityType() { + return priorityType; + } + + @Override + public int getGeneId() { + return geneId; + } + + @Override + public String getGeneSymbol() { + return geneSymbol; + } + + @Override + public double getScore() { + return score; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof AbstractPriorityResult)) return false; + AbstractPriorityResult that = (AbstractPriorityResult) o; + return geneId == that.geneId && + Double.compare(that.score, score) == 0 && + priorityType == that.priorityType && + Objects.equals(geneSymbol, that.geneSymbol); + } + + @Override + public int hashCode() { + return Objects.hash(priorityType, geneId, geneSymbol, score); + } + + @Override + public String toString() { + return "AbstractPriorityResult{" + + "priorityType=" + priorityType + + ", geneId=" + geneId + + ", geneSymbol='" + geneSymbol + '\'' + + ", score=" + score + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriority.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriority.java new file mode 100644 index 000000000..dd18d7017 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriority.java @@ -0,0 +1,309 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.jblas.FloatMatrix; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrix; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrixIO; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.ArrayList; +import java.util.List; +import java.util.Objects; +import java.util.function.Function; +import java.util.stream.Stream; + +/** + * Filter genes according to the random walk proximity in the protein-protein + * interaction network. + *

+ * The files required for the constructor of this filter should be downloaded + * from: + * http://compbio.charite.de/hudson/job/randomWalkMatrix/lastSuccessfulBuild/artifact/ + *

+ * This class coordinates random walk analysis as described in the paper + * + * Walking the interactome for prioritization of candidate disease genes. + * + * @see RandomWalk + * Hudson page + * @author Sebastian Köhler + * @version 0.09 (3 November, 2013) + */ +public class ExomeWalkerPriority implements Prioritiser { + + private static final Logger logger = LoggerFactory.getLogger(ExomeWalkerPriority.class); + + private final PriorityType priorityType = PriorityType.EXOMEWALKER_PRIORITY; + + /** + * A list of messages that can be used to create a display in a HTML page or + * elsewhere. + */ + private List messages = new ArrayList<>(); + + /** + * The random walk matrix object + */ + private DataMatrix randomWalkMatrix; + + /** + * List of the Entrez Gene IDs corresponding to the disease gene family that + * will be used to prioritize the genes with variants in the exome. + */ + private List seedGenes; + + /** + * This is the matrix of similarities between the seeed genes and all genes + * in the network, i.e., pinfinity. + */ + private FloatMatrix combinedProximityVector; + + /** + * Create a new instance of the {@link ExomeWalkerPriority}. + * + * Assumes the list of seed genes (Entrez gene IDs) has been set!! This + * happens with the method {@link #setParameters}. + * + * @param randomWalkMatrixFileZip The zipped(!) RandomWalk matrix file. + * @param randomWalkGeneId2IndexFileZip The zipped(!) file with the mapping + * between Entrez-Ids and Matrix-Indices. + * @see Uberpheno + * Hudson page + */ + public ExomeWalkerPriority(String randomWalkMatrixFileZip, String randomWalkGeneId2IndexFileZip) { + + if (randomWalkMatrix == null) { + try { + randomWalkMatrix = DataMatrixIO.loadDataMatrix(randomWalkMatrixFileZip, randomWalkGeneId2IndexFileZip, true); + } catch (Exception e) { + /* This exception is thrown if the files for the random walk cannot be found. */ + logger.error("Unable to initialize the random walk matrix", e); + } + } + } + + /** + * + * @param randomWalkMatrix + * @param entrezSeedGenes + */ + public ExomeWalkerPriority(DataMatrix randomWalkMatrix, List entrezSeedGenes) { + + this.randomWalkMatrix = randomWalkMatrix; + seedGenes = new ArrayList<>(); + addMatchedGenesToSeedGeneList(entrezSeedGenes); + computeDistanceAllNodesFromStartNodes(); + } + + /** + * Adds the Entrez ids in the list provided to the seedGenes if it is + * contained in the DataMatrix. + * + * @param entrezSeedGenes + */ + private void addMatchedGenesToSeedGeneList(List entrezSeedGenes) { + for (Integer entrezId : entrezSeedGenes) { + + if (randomWalkMatrix.containsGene(entrezId)) { + seedGenes.add(entrezId); + } else { + logger.warn("Cannot use entrez-id {} as seed gene as it is not present in the DataMatrix provided.", entrezId); + } + } + + if (this.seedGenes.isEmpty()) { + logger.error("Could not find any of the given genes in random-walk matrix. You gave: {}", entrezSeedGenes); + } + } + + /** + * Flag to output results of filtering against Genewanderer. + */ + @Override + public PriorityType getPriorityType() { + return priorityType; + } + + /** + * Compute the distance of all genes in the Random Walk matrix to the set of + * seed genes given by the user. + */ + private void computeDistanceAllNodesFromStartNodes() { + boolean first = true; +// FloatMatrix combinedProximityVector = null; + for (Integer seedGeneEntrezId : seedGenes) { + //shouldn't happed as we've already thrown this in the constructor +// if (this.randomWalkMatrix == null) { +// String e = "[GeneWanderer.java] Error: randomWalkMatrix is null"; +// throw new ExomizerInitializationException(e); +// } +// if (this.randomWalkMatrix.objectid2idx == null) { +// String e = "[GeneWanderer.java] Error: randomWalkMatrix.object2idx is null"; +// throw new ExomizerInitializationException(e); +// } + if (!randomWalkMatrix.containsGene(seedGeneEntrezId)) { + /* Note that the RW matrix does not have an entry for every + Entrez Gene. If the gene is not contained in the matrix, we + skip it. The gene will be given a (low) default score in + Genewanderer Relevance. + */ + continue; + } + //Get the column we need, this has the distances of ALL genes to the current gene + FloatMatrix column = randomWalkMatrix.getColumnMatrixForGene(seedGeneEntrezId); + + // for the first column/known gene we have to init the resulting vector + if (first) { + combinedProximityVector = column; + first = false; + } else { + combinedProximityVector = combinedProximityVector.add(column); + } + } + /* p_{\infty} */ +// this.combinedProximityVector = combinedProximityVector; + } + + @Override + public Stream prioritise(List hpoIds, List genes) { + if (seedGenes == null || seedGenes.isEmpty()) { + throw new RuntimeException("Please specify a valid list of known genes!"); + } + return genes.stream().map(prioritiseGene()); + } + + private Function prioritiseGene() { + return gene -> { + double score = calculateGeneScore(gene.getEntrezGeneID()); + return new ExomeWalkerPriorityResult(gene.getEntrezGeneID(), gene.getGeneSymbol(), score); + }; + } + + /** + * Prioritize a list of candidate {@link Gene Gene} objects + * (the candidate genes have rare, potentially pathogenic variants). + * + * @param geneList List of candidate genes. + */ + @Override + public void prioritizeGenes(List hpoIds, List geneList) { + if (seedGenes == null || seedGenes.isEmpty()) { + throw new RuntimeException("Please specify a valid list of known genes!"); + } + + double max = Double.MIN_VALUE; + double min = Double.MAX_VALUE; + for (Gene gene : geneList) { + ExomeWalkerPriorityResult relScore = prioritiseGene().apply(gene); + double score = relScore.getScore(); + if (score > max) { + max = score; + } + if (score < min) { + min = score; + } + gene.addPriorityResult(relScore); + } + + +// float factor = 1f / (float) max; +// float factorMaxPossible = 1f / (float) combinedProximityVector.max(); +// +// for (Gene gene : geneList) { +// float scr = gene.getPriorityResult(EXOMEWALKER_PRIORITY); +// float newscore = factor * (scr - (float) min); +// gene.resetPriorityScore(EXOMEWALKER_PRIORITY, newscore); +// newscore = factorMaxPossible * (scr - (float) min); +// gene.resetPriorityScore(EXOMEWALKER_PRIORITY, newscore); +// } + + //TODO: move this into a report if required +// String s = String.format("Protein-Protein Interaction Data was available for %d of %d genes (%.1f%%)", +// PPIdataAvailable, totalGenes, 100f * ((float) PPIdataAvailable / (float) totalGenes)); +// this.messages.add(s); +// StringBuilder sb = new StringBuilder(); +// sb.append("Seed genes:"); +// for (Integer seed : seedGenes) { +// sb.append(seed + " "); +// } +// this.messages.add(sb.toString()); + } + + private double calculateGeneScore(int entrezId) { + if (randomWalkMatrix.containsGene(entrezId)) { + return computeSimStartNodesToNode(entrezId); + } else { + return 0; + } + } + + /** + * @return list of messages representing process, result, and if any, errors + * of score filtering. + */ + public List getMessages() { + return messages; + } + + /** + * This function retrieves the random walk similarity score for the gene + * + * @param nodeToCompute Gene Id for which the RW score is to bee retrieved + */ + private double computeSimStartNodesToNode(int nodeToCompute) { + int idx = randomWalkMatrix.getRowIndexForGene(nodeToCompute); + return combinedProximityVector.get(idx, 0); + } + + @Override + public int hashCode() { + int hash = 7; + hash = 37 * hash + Objects.hashCode(this.priorityType); + hash = 37 * hash + Objects.hashCode(this.seedGenes); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final ExomeWalkerPriority other = (ExomeWalkerPriority) obj; + if (this.priorityType != other.priorityType) { + return false; + } + return Objects.equals(this.seedGenes, other.seedGenes); + } + + @Override + public String toString() { + return "ExomeWalkerPriority{" + "seedGenes=" + seedGenes + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriorityResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriorityResult.java new file mode 100644 index 000000000..75b1dc1cd --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriorityResult.java @@ -0,0 +1,47 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +/** + * + * @author Sebastian Köhler + * @version 0.06 (6 January, 2014). + */ +public class ExomeWalkerPriorityResult extends AbstractPriorityResult { + + /** + * @param score The similarity score assigned by the random walk. + */ + public ExomeWalkerPriorityResult(int geneId, String geneSymbol, double score) { + super(PriorityType.EXOMEWALKER_PRIORITY, geneId, geneSymbol, score); + } + + /** + * @return An HTML list with an entry representing the GeneWanderer (Random + * walk) similarity score. + * + */ + @Override + public String getHTMLCode() { + return String.format("

Random walk similarity score: %.3f
", this.score); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhiveOptions.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhiveOptions.java new file mode 100644 index 000000000..0c8f3a256 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhiveOptions.java @@ -0,0 +1,281 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.google.common.collect.Sets; +import org.monarchinitiative.exomiser.core.phenotype.Model; +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.ArrayList; +import java.util.Collections; +import java.util.List; +import java.util.Set; + +/** + * Class for specifying HiPhive options. These can trigger benchmarking mode or allow specification of + * which organism to run against and whether or not to run against the PPI matrix. + * + * Valid run parameters are 'human', 'mouse', 'fish', 'ppi'. Combinations must be comma separated, for example + * 'human,fish,ppi' will only run the genes against human and fish phenotypes and the ppi matrix. + * + * Both the diseaseId and the candidate gene symbol must be valid in order to trigger benchmarking mode. When these are + * specified the relevant models will be removed from the result set. + * + * @author Jules Jacobsen + */ +public class HiPhiveOptions { + private static final Logger logger = LoggerFactory.getLogger(HiPhiveOptions.class); + + public static final HiPhiveOptions DEFAULT = HiPhiveOptions.builder().build(); + + private final String diseaseId; + private final String candidateGeneSymbol; + + private final boolean benchmarkingEnabled; + + private final boolean runPpi; + private final boolean runHuman; + private final boolean runMouse; + private final boolean runFish; + + private HiPhiveOptions(Builder builder) { + diseaseId = builder.diseaseId; + candidateGeneSymbol = builder.candidateGeneSymbol; + benchmarkingEnabled = builder.benchmarkingEnabled; + runPpi = builder.runPpi; + runHuman = builder.runHuman; + runMouse = builder.runMouse; + runFish = builder.runFish; + } + + public String getDiseaseId() { + return diseaseId; + } + + public String getCandidateGeneSymbol() { + return candidateGeneSymbol; + } + + public boolean isBenchmarkingEnabled() { + return benchmarkingEnabled; + } + + public boolean runPpi() { + return runPpi; + } + + public boolean runFish() { + return runFish; + } + + public boolean runMouse() { + return runMouse; + } + + public boolean runHuman() { + return runHuman; + } + + public boolean isBenchmarkHit(GeneModel model) { + return matchesDisease(model) && matchesCandidateGeneSymbol(model); + } + + private boolean matchesCandidateGeneSymbol(GeneModel model) { + return model.getHumanGeneSymbol() == null ? candidateGeneSymbol == null : model.getHumanGeneSymbol().equals(candidateGeneSymbol); + } + + private boolean matchesDisease(Model model) { + // human model ID is now disease plus entrezgene to ensure uniqueness in HiPhive code + return model.getId() == null ? diseaseId == null : model.getId().split("_")[0].equals(diseaseId); +// return model.getId() == null ? diseaseId == null : model.getId().equals(diseaseId + "_" + model.getEntrezGeneId()); + } + + public Set getOrganismsToRun() { + List organismsToRun = new ArrayList<>(); + if (runHuman){ + organismsToRun.add(Organism.HUMAN); + } + if(runMouse) { + organismsToRun.add(Organism.MOUSE); + } + if (runFish) { + organismsToRun.add(Organism.FISH); + } + + if(organismsToRun.isEmpty()) { + return Collections.emptySet(); + } + return Sets.immutableEnumSet(organismsToRun); + } + + static class InvalidRunParameterException extends RuntimeException { + InvalidRunParameterException(String message) { + super(message); + } + } + + @Override + public boolean equals(Object o) { + if (this == o) { + return true; + } + if (o == null || getClass() != o.getClass()) { + return false; + } + + HiPhiveOptions that = (HiPhiveOptions) o; + + if (benchmarkingEnabled != that.benchmarkingEnabled) { + return false; + } + if (runPpi != that.runPpi) { + return false; + } + if (runHuman != that.runHuman) { + return false; + } + if (runMouse != that.runMouse) { + return false; + } + if (runFish != that.runFish) { + return false; + } + if (diseaseId != null ? !diseaseId.equals(that.diseaseId) : that.diseaseId != null) { + return false; + } + return !(candidateGeneSymbol != null ? !candidateGeneSymbol.equals(that.candidateGeneSymbol) : that.candidateGeneSymbol != null); + + } + + @Override + public int hashCode() { + int result = diseaseId != null ? diseaseId.hashCode() : 0; + result = 31 * result + (candidateGeneSymbol != null ? candidateGeneSymbol.hashCode() : 0); + result = 31 * result + (benchmarkingEnabled ? 1 : 0); + result = 31 * result + (runPpi ? 1 : 0); + result = 31 * result + (runHuman ? 1 : 0); + result = 31 * result + (runMouse ? 1 : 0); + result = 31 * result + (runFish ? 1 : 0); + return result; + } + + @Override + public String toString() { + return "HiPhiveOptions{" + + "diseaseId='" + diseaseId + '\'' + + ", candidateGeneSymbol='" + candidateGeneSymbol + '\'' + + ", benchmarkingEnabled=" + benchmarkingEnabled + + ", runPpi=" + runPpi + + ", runHuman=" + runHuman + + ", runMouse=" + runMouse + + ", runFish=" + runFish + + '}'; + } + + public static Builder builder() { + return new Builder(); + } + + public static class Builder { + + private String diseaseId = ""; + private String candidateGeneSymbol = ""; + + private boolean benchmarkingEnabled = false; + + private boolean runPpi = true; + private boolean runHuman = true; + private boolean runMouse = true; + private boolean runFish = true; + + + private Builder() {} + + /** + * Parses the runParams to determine what needs running. By default all options are enabled. Expects a comma-separated list of parameters. For example + * 'human,mouse,fish,ppi' is equivalent to the default, 'human,mouse' will only run HiPhive against human and mouse models. + * @param runParams + * @return + */ + public Builder runParams(String runParams) { + parseRunParams(runParams); + return this; + } + + private void parseRunParams(String runParameters) { + if (runParameters != null && !runParameters.isEmpty()) { + setAllRunParametersFalse(); + for (String input : runParameters.split(",")) { + String param = input.trim(); + switch (param) { + case "ppi": + this.runPpi = true; + break; + case "human": + this.runHuman = true; + break; + case "mouse": + this.runMouse = true; + break; + case "fish": + this.runFish = true; + break; + default: + throw new InvalidRunParameterException(String.format("'%s' is not a valid parameter.", param)); + } + } + } + } + + private void setAllRunParametersFalse() { + this.runPpi = false; + this.runHuman = false; + this.runMouse = false; + this.runFish = false; + } + + public Builder candidateGeneSymbol(String candidateGeneSymbol) { + this.candidateGeneSymbol = candidateGeneSymbol; + return this; + } + + public Builder diseaseId(String diseaseId) { + this.diseaseId = diseaseId; + return this; + } + + public HiPhiveOptions build() { + this.benchmarkingEnabled = assertBenchmarkingStatus(diseaseId, candidateGeneSymbol); + return new HiPhiveOptions(this); + } + + private boolean assertBenchmarkingStatus(String diseaseId, String candidateGeneSymbol) { + return !(nullOrEmpty(diseaseId) || nullOrEmpty(candidateGeneSymbol)); + } + + private boolean nullOrEmpty(String string) { + return string == null || string.isEmpty(); + } + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriority.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriority.java new file mode 100644 index 000000000..8c7f1f7a7 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriority.java @@ -0,0 +1,247 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.google.common.collect.ArrayListMultimap; +import com.google.common.collect.ImmutableList; +import com.google.common.collect.ImmutableSet; +import com.google.common.collect.ListMultimap; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.phenotype.*; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneMatch; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; +import org.monarchinitiative.exomiser.core.prioritisers.service.PriorityService; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrix; +import org.monarchinitiative.exomiser.core.prioritisers.util.HiPhiveProteinInteractionScorer; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.time.Duration; +import java.time.Instant; +import java.util.*; +import java.util.function.Function; +import java.util.stream.Stream; + +import static java.util.Comparator.comparingDouble; +import static java.util.stream.Collectors.*; + +/** + * Filter genes according phenotypic similarity and to the random walk proximity + * in the protein-protein interaction network. + * + * @author Damian Smedley + * @author Jules Jacobsen + */ +public class HiPhivePriority implements Prioritiser { + + private static final Logger logger = LoggerFactory.getLogger(HiPhivePriority.class); + + private static final PriorityType PRIORITY_TYPE = PriorityType.HIPHIVE_PRIORITY; + private static final double HIGH_QUALITY_SCORE_CUTOFF = 0.6; + + private final HiPhiveOptions options; + private final DataMatrix randomWalkMatrix; + private final PriorityService priorityService; + + /** + * @param options + * @param randomWalkMatrix + */ + public HiPhivePriority(HiPhiveOptions options, DataMatrix randomWalkMatrix, PriorityService priorityService) { + this.options = options; + this.randomWalkMatrix = randomWalkMatrix; + this.priorityService = priorityService; + } + + @Override + public PriorityType getPriorityType() { + return PRIORITY_TYPE; + } + + @Override + public Stream prioritise(List hpoIds, List genes) { + if (options.isBenchmarkingEnabled()) { + logger.info("Running in benchmarking mode for disease: {} and candidateGene: {}", options.getDiseaseId(), options.getCandidateGeneSymbol()); + } + List hpoPhenotypeTerms = priorityService.makePhenotypeTermsFromHpoIds(hpoIds); + + Set wantedGeneIds = genes.stream().map(Gene::getEntrezGeneID).collect(ImmutableSet.toImmutableSet()); + + ListMultimap bestGeneModels = makeBestGeneModelsForOrganisms(hpoPhenotypeTerms, Organism.HUMAN, options + .getOrganismsToRun(), wantedGeneIds); + + HiPhiveProteinInteractionScorer ppiScorer = makeHiPhiveProteinInteractionScorer(bestGeneModels, options.runPpi()); + + logger.info("Prioritising genes..."); + return genes.stream().map(makeHiPhivePriorityResult(hpoPhenotypeTerms, bestGeneModels, ppiScorer)); + } + + private Function makeHiPhivePriorityResult(List hpoPhenotypeTerms, ListMultimap bestGeneModels, HiPhiveProteinInteractionScorer ppiScorer) { + return gene -> { + Integer entrezGeneId = gene.getEntrezGeneID(); + String geneSymbol = gene.getGeneSymbol(); + + List bestPhenotypeMatchModels = bestGeneModels.get(entrezGeneId); + double phenoScore = bestPhenotypeMatchModels.stream() + .mapToDouble(GeneModelPhenotypeMatch::getScore) + .max() + .orElse(0); + + GeneMatch closestPhenoMatchInNetwork = ppiScorer.getClosestPhenoMatchInNetwork(entrezGeneId); + List closestPhysicallyInteractingGeneModels = closestPhenoMatchInNetwork.getBestMatchModels(); + double ppiScore = closestPhenoMatchInNetwork.getScore(); + + double score = Double.max(phenoScore, ppiScore); + + logger.debug("Making result for {} {} score={} phenoScore={} walkerScore={}", geneSymbol, entrezGeneId, score, phenoScore, ppiScore); + return new HiPhivePriorityResult(entrezGeneId, geneSymbol, score, hpoPhenotypeTerms, bestPhenotypeMatchModels, closestPhysicallyInteractingGeneModels, ppiScore, matchesCandidateGeneSymbol(geneSymbol)); + }; + } + + private boolean matchesCandidateGeneSymbol(String geneSymbol) { + //new Jannovar labelling can have multiple genes per var but first one is most pathogenic- we'll take this one. + return options.getCandidateGeneSymbol().equals(geneSymbol) || geneSymbol.startsWith(options.getCandidateGeneSymbol() + ","); + } + + private HiPhiveProteinInteractionScorer makeHiPhiveProteinInteractionScorer(ListMultimap bestGeneModels, boolean runPpi) { + if (runPpi) { + logger.info("Creating PPI scorer "); + return new HiPhiveProteinInteractionScorer(randomWalkMatrix, bestGeneModels, HIGH_QUALITY_SCORE_CUTOFF); + } + return HiPhiveProteinInteractionScorer.EMPTY; + } + + private ListMultimap makeBestGeneModelsForOrganisms(List hpoPhenotypeTerms, Organism referenceOrganism, Set organismsToCompare, Set wantedGeneIds) { + + //CAUTION!! this must always run in order that the best score is set - HUMAN runs first as we are comparing HP to other phenotype ontology terms. + PhenotypeMatcher referenceOrganismPhenotypeMatcher = priorityService.getPhenotypeMatcherForOrganism(hpoPhenotypeTerms, referenceOrganism); + QueryPhenotypeMatch bestQueryPhenotypeMatch = referenceOrganismPhenotypeMatcher.getQueryPhenotypeMatch(); + if (bestQueryPhenotypeMatch.getBestPhenotypeMatches().isEmpty()) { + logger.warn("{} has no phenotype matches for input set {}", bestQueryPhenotypeMatch, hpoPhenotypeTerms); + } + List bestOrganismPhenotypeMatches = getBestOrganismPhenotypeMatches(hpoPhenotypeTerms, referenceOrganismPhenotypeMatcher, organismsToCompare); + + ListMultimap bestGeneModels = ArrayListMultimap.create(); + for (PhenotypeMatcher organismPhenotypeMatcher : bestOrganismPhenotypeMatches) { + Set modelsToScore = priorityService.getModelsForOrganism(organismPhenotypeMatcher.getOrganism()) + .stream() + .filter(model -> wantedGeneIds.contains(model.getEntrezGeneId())) + .collect(toSet()); + + List geneModelPhenotypeMatches = scoreModels(bestQueryPhenotypeMatch, organismPhenotypeMatcher, modelsToScore); + Map bestGeneModelsForOrganism = mapBestModelByGene(geneModelPhenotypeMatches); + bestGeneModelsForOrganism.entrySet().forEach(entry -> bestGeneModels.put(entry.getKey(), entry.getValue())); + } + + return bestGeneModels; + } + + private List getBestOrganismPhenotypeMatches(List hpoPhenotypeTerms, PhenotypeMatcher referenceOrganismPhenotypeMatcher, Set organismsToCompare) { + ImmutableList.Builder bestPossibleOrganismPhenotypeMatches = ImmutableList.builder(); + for (Organism organism : organismsToCompare) { + if (organism == referenceOrganismPhenotypeMatcher.getOrganism()) { + //no need to re-query the database for these + bestPossibleOrganismPhenotypeMatches.add(referenceOrganismPhenotypeMatcher); + } else { + PhenotypeMatcher bestOrganismPhenotypes = priorityService.getPhenotypeMatcherForOrganism(hpoPhenotypeTerms, organism); + bestPossibleOrganismPhenotypeMatches.add(bestOrganismPhenotypes); + } + } + return bestPossibleOrganismPhenotypeMatches.build(); + } + + //returns a map of geneId to best model + private Map mapBestModelByGene(List organismModels) { + return getBestModelsByGene(organismModels) + .filter(Optional::isPresent) + .map(Optional::get) + .collect(toMap(GeneModelPhenotypeMatch::getEntrezGeneId, Function.identity())); + } + + private Stream> getBestModelsByGene(List organismModels) { + if (options.isBenchmarkingEnabled()) { + return organismModels.parallelStream() + .filter(model -> model.getScore() > 0) + // catch hit to known disease-gene association for purposes of benchmarking i.e to simulate novel gene discovery performance + .filter(model -> !options.isBenchmarkHit(model)) + .collect(groupingByConcurrent(GeneModelPhenotypeMatch::getEntrezGeneId, maxBy(comparingDouble(GeneModelPhenotypeMatch::getScore)))) + .values() + .stream(); + } + return organismModels.parallelStream() + .filter(model -> model.getScore() > 0) + .collect(groupingByConcurrent(GeneModelPhenotypeMatch::getEntrezGeneId, maxBy(comparingDouble(GeneModelPhenotypeMatch::getScore)))) + .values() + .stream(); + } + + // n.b. this is *almost* identical to PhivePriority.scoreModels() the only difference is in HiPhive we're comparing the input terms + // against all possible models (disease, mouse, fish), whereas in Phive we're only comparing against mouse. + // For HiPhive the bestQueryPhenotypeMatch is going to be an HPO self-hit for every term in the query set so the + // scoreModelPhenotypeMatch uses hpoIds.size() as the numMatchedQueryPhenotypes. + private List scoreModels(QueryPhenotypeMatch bestQueryPhenotypeMatch, PhenotypeMatcher organismPhenotypeMatcher, Collection models) { + Organism organism = organismPhenotypeMatcher.getOrganism(); + + ModelScorer modelScorer = PhenodigmModelScorer.forMultiCrossSpecies(bestQueryPhenotypeMatch, organismPhenotypeMatcher); + + logger.info("Scoring {} models", organism); + Instant timeStart = Instant.now(); + //running this in parallel here can cut the overall time for this method in half or better - ~650ms -> ~350ms on Pfeiffer test set. + List geneModelPhenotypeMatches = models.parallelStream() + .map(model -> { + ModelPhenotypeMatch score = modelScorer.scoreModel(model); + return new GeneModelPhenotypeMatch(score.getScore(), model, score.getBestPhenotypeMatches()); + }) + .collect(toList()); + + Duration duration = Duration.between(timeStart, Instant.now()); + logger.info("Scored {} {} models - {} ms", models.size(), organism, duration.toMillis()); + return geneModelPhenotypeMatches; + } + + @Override + public int hashCode() { + int hash = 3; + hash = 73 * hash + Objects.hashCode(this.randomWalkMatrix); + hash = 73 * hash + Objects.hashCode(this.options); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final HiPhivePriority other = (HiPhivePriority) obj; + return Objects.equals(this.randomWalkMatrix, other.randomWalkMatrix) && Objects.equals(this.options, other.options); + } + + @Override + public String toString() { + return "HiPhivePriority{" + + "options=" + options + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityResult.java new file mode 100644 index 000000000..0e5c277e1 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityResult.java @@ -0,0 +1,302 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneDiseaseModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; + +import java.util.List; +import java.util.Map; +import java.util.function.Function; + +import static java.util.stream.Collectors.toMap; + +/** + * + * @author Jules Jacobsen + */ +public class HiPhivePriorityResult extends AbstractPriorityResult { + + private double humanScore = 0; + private double mouseScore = 0; + private double fishScore = 0; + + private final double ppiScore; + + private final boolean candidateGeneMatch; + + private final List queryPhenotypeTerms; + private final List phenotypeEvidence; + private final List ppiEvidence; + + + /** + * @param score The similarity score assigned by the random walk. + */ + public HiPhivePriorityResult(int geneId, String geneSymbol, double score, List queryPhenotypeTerms, List phenotypeEvidence, List ppiEvidence, double ppiScore, boolean candidateGeneMatch) { + super(PriorityType.HIPHIVE_PRIORITY, geneId, geneSymbol, score); + this.queryPhenotypeTerms = queryPhenotypeTerms; + setPhenotypeEvidenceScores(phenotypeEvidence); + + this.phenotypeEvidence = phenotypeEvidence; + this.ppiEvidence = ppiEvidence; + this.ppiScore = ppiScore; + + this.candidateGeneMatch = candidateGeneMatch; + } + + private void setPhenotypeEvidenceScores(List phenotypeEvidence) { + if (phenotypeEvidence != null) { + for (GeneModelPhenotypeMatch model : phenotypeEvidence) { + switch (model.getOrganism()) { + case HUMAN: + humanScore = model.getScore(); + break; + case MOUSE: + mouseScore = model.getScore(); + break; + case FISH: + fishScore = model.getScore(); + break; + } + } + } + } + + + @Override + public String getGeneSymbol() { + return geneSymbol; + } + + @Override + public double getScore() { + return score; + } + + public List getQueryPhenotypeTerms() { + return queryPhenotypeTerms; + } + + public List getPhenotypeEvidence() { + return phenotypeEvidence; + } + + public List getPpiEvidence() { + return ppiEvidence; + } + + public double getHumanScore() { + return humanScore; + } + + public double getMouseScore() { + return mouseScore; + } + + public double getFishScore() { + return fishScore; + } + + public double getPpiScore() { + return ppiScore; + } + + public boolean isCandidateGeneMatch() { + return candidateGeneMatch; + } + + /** + * @return A summary for the text output formats + */ + @JsonIgnore + public String getPhenotypeEvidenceText() { + StringBuilder humanBuilder = new StringBuilder(); + StringBuilder mouseBuilder = new StringBuilder(); + StringBuilder fishBuilder = new StringBuilder(); + StringBuilder humanPPIBuilder = new StringBuilder(); + StringBuilder mousePPIBuilder = new StringBuilder(); + StringBuilder fishPPIBuilder = new StringBuilder(); + + for (GeneModelPhenotypeMatch geneModelPhenotypeMatch : phenotypeEvidence) { + Map bestMatchesForModel = getPhenotypeTermPhenotypeMatchMap(geneModelPhenotypeMatch); + switch (geneModelPhenotypeMatch.getOrganism()) { + case HUMAN: + GeneDiseaseModel geneDiseaseModel = (GeneDiseaseModel) geneModelPhenotypeMatch.getModel(); + humanBuilder.append(geneDiseaseModel.getDiseaseTerm() + " (" + geneDiseaseModel.getDiseaseId() + "): "); + makeBestPhenotypeMatchText(humanBuilder, bestMatchesForModel); + break; + case MOUSE: + makeBestPhenotypeMatchText(mouseBuilder, bestMatchesForModel); + break; + case FISH: + makeBestPhenotypeMatchText(fishBuilder, bestMatchesForModel); + } + } + for (GeneModelPhenotypeMatch geneModelPhenotypeMatch : ppiEvidence) { + Map bestMatchesForModel = getPhenotypeTermPhenotypeMatchMap(geneModelPhenotypeMatch); + switch (geneModelPhenotypeMatch.getOrganism()) { + case HUMAN: + GeneDiseaseModel geneDiseaseModel = (GeneDiseaseModel) geneModelPhenotypeMatch.getModel(); + humanPPIBuilder.append("Proximity to " + geneModelPhenotypeMatch.getHumanGeneSymbol() + " associated with " + geneDiseaseModel + .getDiseaseTerm() + " (" + geneDiseaseModel.getDiseaseId() + "): "); + makeBestPhenotypeMatchText(humanPPIBuilder, bestMatchesForModel); + break; + case MOUSE: + mousePPIBuilder.append("Proximity to " + geneModelPhenotypeMatch.getHumanGeneSymbol() + " "); + makeBestPhenotypeMatchText(mousePPIBuilder, bestMatchesForModel); + break; + case FISH: + fishPPIBuilder.append("Proximity to " + geneModelPhenotypeMatch.getHumanGeneSymbol() + " "); + makeBestPhenotypeMatchText(fishPPIBuilder, bestMatchesForModel); + } + } + String human = humanBuilder.toString(); + String mouse = mouseBuilder.toString(); + String fish = fishBuilder.toString(); + String humanPPI = humanPPIBuilder.toString(); + String mousePPI = mousePPIBuilder.toString(); + String fishPPI = fishPPIBuilder.toString(); + return String.format("%s\t%s\t%s\t%s\t%s\t%s", human, mouse, fish, humanPPI, mousePPI, fishPPI); + } + + private Map getPhenotypeTermPhenotypeMatchMap(GeneModelPhenotypeMatch geneModelPhenotypeMatch) { + return geneModelPhenotypeMatch + .getBestModelPhenotypeMatches() + .stream() + .collect(toMap(PhenotypeMatch::getQueryPhenotype, Function.identity())); + } + + /** + */ + @JsonIgnore + @Override + public String getHTMLCode() { + StringBuilder stringBuilder = new StringBuilder(); + + for (GeneModelPhenotypeMatch geneModelPhenotypeMatch : phenotypeEvidence) { + switch (geneModelPhenotypeMatch.getOrganism()) { + case HUMAN: + GeneDiseaseModel geneDiseaseModel = (GeneDiseaseModel) geneModelPhenotypeMatch.getModel(); + String diseaseLink = makeDiseaseLink(geneDiseaseModel.getDiseaseId(), geneDiseaseModel.getDiseaseTerm()); + stringBuilder.append(String.format("
Phenotypic similarity %.3f to %s associated with %s.
", geneModelPhenotypeMatch + .getScore(), diseaseLink, geneModelPhenotypeMatch.getHumanGeneSymbol())); + break; + case MOUSE: + stringBuilder.append(String.format("
Phenotypic similarity %.3f to mouse mutant involving %s.
", geneModelPhenotypeMatch + .getScore(), geneModelPhenotypeMatch.getHumanGeneSymbol(), geneModelPhenotypeMatch.getHumanGeneSymbol())); + break; + case FISH: + stringBuilder.append(String.format("
Phenotypic similarity %.3f to zebrafish mutant involving %s.
", geneModelPhenotypeMatch + .getScore(), geneModelPhenotypeMatch.getHumanGeneSymbol(), geneModelPhenotypeMatch.getHumanGeneSymbol())); + break; + } + Map bestMatchesForModel = getPhenotypeTermPhenotypeMatchMap(geneModelPhenotypeMatch); + makeBestPhenotypeMatchHtml(stringBuilder, bestMatchesForModel); + stringBuilder.append("
"); + } + + for (GeneModelPhenotypeMatch geneModelPhenotypeMatch : ppiEvidence) { + String stringDbLink = "http://string-db.org/newstring_cgi/show_network_section.pl?identifiers=" + geneSymbol + "%0D" + geneModelPhenotypeMatch + .getHumanGeneSymbol() + "&required_score=700&network_flavor=evidence&species=9606&limit=20"; + + switch (geneModelPhenotypeMatch.getOrganism()) { + case HUMAN: + GeneDiseaseModel geneDiseaseModel = (GeneDiseaseModel) geneModelPhenotypeMatch.getModel(); + String diseaseLink = makeDiseaseLink(geneDiseaseModel.getDiseaseId(), geneDiseaseModel.getDiseaseTerm()); + stringBuilder.append(String.format("
Proximity score %.3f in interactome to %s and phenotypic similarity %.3f to %s associated with %s.
", ppiScore, stringDbLink, geneModelPhenotypeMatch + .getHumanGeneSymbol(), geneModelPhenotypeMatch.getScore(), diseaseLink, geneModelPhenotypeMatch + .getHumanGeneSymbol())); + break; + case MOUSE: + stringBuilder.append(String.format("
Proximity score %.3f in interactome to %s and phenotypic similarity %.3f to mouse mutant of %s.
", ppiScore, stringDbLink, geneModelPhenotypeMatch + .getHumanGeneSymbol(), geneModelPhenotypeMatch.getScore(), geneModelPhenotypeMatch.getHumanGeneSymbol())); + break; + case FISH: + stringBuilder.append(String.format("
Proximity score %.3f in interactome to %s and phenotypic similarity %.3f to fish mutant of %s.
", ppiScore, stringDbLink, geneModelPhenotypeMatch + .getHumanGeneSymbol(), geneModelPhenotypeMatch.getScore(), geneModelPhenotypeMatch.getHumanGeneSymbol())); + break; + } + Map bestModelPhenotypeMatches = getPhenotypeTermPhenotypeMatchMap(geneModelPhenotypeMatch); + makeBestPhenotypeMatchHtml(stringBuilder, bestModelPhenotypeMatches); + stringBuilder.append("
"); + } + String html = stringBuilder.toString(); + if (html.isEmpty()) { + return "
No phenotype or PPI evidence
"; + } + return html; + } + + private void makeBestPhenotypeMatchText(StringBuilder stringBuilder, Map bestModelPhenotypeMatches) { + for (PhenotypeTerm queryTerm : queryPhenotypeTerms) { + if (bestModelPhenotypeMatches.containsKey(queryTerm)) {// && bestModelPhenotypeMatches.get(queryTerm).getScore() > 1.75) {// RESTRICT TO HIGH QUALITY MATCHES + PhenotypeMatch match = bestModelPhenotypeMatches.get(queryTerm); + PhenotypeTerm matchTerm = match.getMatchPhenotype(); + stringBuilder.append(String.format("%s (%s)-%s (%s), ", queryTerm.getLabel(), queryTerm.getId(), matchTerm.getLabel(), matchTerm.getId())); + } + } + } + + private void makeBestPhenotypeMatchHtml(StringBuilder stringBuilder, Map bestModelPhenotypeMatches) { + stringBuilder.append("
Best Phenotype Matches:
"); + for (PhenotypeTerm queryTerm : queryPhenotypeTerms) { + if (bestModelPhenotypeMatches.containsKey(queryTerm)) { + PhenotypeMatch match = bestModelPhenotypeMatches.get(queryTerm); + PhenotypeTerm matchTerm = match.getMatchPhenotype(); + stringBuilder.append(String.format("
%s, %s - %s, %s
", queryTerm.getId(), queryTerm.getLabel(), matchTerm.getId(), matchTerm.getLabel())); + } else { + stringBuilder.append(String.format("
%s, %s -
", queryTerm.getId(), queryTerm.getLabel())); + } + } + } + + private String makeDiseaseLink(String diseaseId, String diseaseTerm) { + String[] databaseNameAndIdentifier = diseaseId.split(":"); + String databaseName = databaseNameAndIdentifier[0]; + String id = databaseNameAndIdentifier[1]; + if (databaseName.equals("OMIM")) { + return "" + diseaseTerm + ""; + } else { + return "" + diseaseTerm + ""; + } + } + + @Override + public String toString() { + return "HiPhivePriorityResult{" + + "geneId=" + geneId + + ", geneSymbol='" + geneSymbol + '\'' + + ", score=" + score + + ", humanScore=" + humanScore + + ", mouseScore=" + mouseScore + + ", fishScore=" + fishScore + + ", ppiScore=" + ppiScore + + ", candidateGeneMatch=" + candidateGeneMatch + + ", queryPhenotypeTerms=" + queryPhenotypeTerms + + ", phenotypeEvidence=" + phenotypeEvidence + + ", ppiEvidence=" + ppiEvidence + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePrioritiser.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePrioritiser.java new file mode 100644 index 000000000..883d01943 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePrioritiser.java @@ -0,0 +1,71 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.monarchinitiative.exomiser.core.model.Gene; + +import java.util.List; +import java.util.Objects; +import java.util.stream.Stream; + +/** + * A non-functional prioritiser to be used as a default stand-in for a real one. + * + * @author Jules Jacobsen + */ +public class NoneTypePrioritiser implements Prioritiser { + + @Override + public void prioritizeGenes(List hpoIds, List geneList) { + //Deliberately empty - this prioritiser does nothing. + } + + @Override + public Stream prioritise(List hpoIds, List genes) { + return Stream.empty(); + } + + @Override + public PriorityType getPriorityType() { + return PriorityType.NONE; + } + + @Override + public int hashCode() { + return Objects.hashCode(NoneTypePrioritiser.class.getName()); + } + + @Override + public boolean equals(Object obj) { + return obj != null && getClass() == obj.getClass(); + } + + @Override + public String toString() { + return "NoneTypePrioritiser{}"; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriority.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriority.java new file mode 100644 index 000000000..71bfc3436 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriority.java @@ -0,0 +1,177 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; +import org.monarchinitiative.exomiser.core.prioritisers.model.InheritanceMode; +import org.monarchinitiative.exomiser.core.prioritisers.service.PriorityService; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.List; +import java.util.Objects; +import java.util.function.Function; +import java.util.function.ToDoubleFunction; +import java.util.stream.Stream; + +/** + * This class is designed to do two things. First, it will add annotations to + * genes based on their annotations to OMIM or Orphanet disease entries in the + * exomiser database (Note that the app PopulateExomiserDatabase.jar, from this + * software package is used to put the data into the database; see there for + * more information). The tables omim and orphanet are used to + * store/retrieve this information. The second purpose of this class is to check + * whether the variants found in the VCF file match with the mode of inheritance + * listed for the disease (column "inheritance" of the omim table; TODO-add + * similar functionality for Orphanet). Thus, if we find a heterozygous mutation + * but the disease is autosomal recessive, then it the corresponding + * disease/gene is not a good candidate, and its OMIM relevance score is reduced + * by a factor of 50%. See the function {@link #scoreInheritanceMode} for + * details on this weighting scheme. + * + * @author Peter N Robinson + * @version 0.16 (28 January,2014) + */ +public class OMIMPriority implements Prioritiser { + + private static final Logger logger = LoggerFactory.getLogger(OMIMPriority.class); + + private static final double DEFAULT_SCORE = 1d; + + private final PriorityService priorityService; + + public OMIMPriority(PriorityService priorityService) { + this.priorityService = priorityService; + } + + /** + * Flag for output field representing OMIM. + */ + @Override + public PriorityType getPriorityType() { + return PriorityType.OMIM_PRIORITY; + } + + /** + * For now, this method just annotates each gene with OMIM data, if + * available, and shows a link in the HTML output. However, we can use this + * method to implement a Phenomizer-type prioritization at a later time + * point. + * + * @param genes A list of the {@link Gene} objects that + * have survived the filtering (i.e., have rare, potentially pathogenic + * variants). + */ + @Override + public void prioritizeGenes(List hpoIds, List genes) { + for (Gene gene : genes) { + OMIMPriorityResult result = prioritiseGene().apply(gene); + gene.addPriorityResult(result); + } + } + + @Override + public Stream prioritise(List hpoIds, List genes) { + return genes.stream().map(prioritiseGene()); + } + + /** + * If the gene is not contained in the database, we return an empty + * but initialized RelevanceScore object. Otherwise, we retrieve a list of + * all OMIM and Orphanet diseases associated with the entrez Gene. + * + **/ + private Function prioritiseGene() { + return gene -> { + List diseases = priorityService.getDiseaseDataAssociatedWithGeneId(gene.getEntrezGeneID()); + //this is a pretty non-punitive prioritiser. We're relying on the other prioritisers to do the main ranking + double score = diseases.stream() + .filter(disease -> disease.getDiseaseId().startsWith("OMIM")) + .map(Disease::getInheritanceMode) + .mapToDouble(scoreInheritanceMode(gene)) + .max() + .orElse(DEFAULT_SCORE); + + return new OMIMPriorityResult(gene.getEntrezGeneID(), gene.getGeneSymbol(), score, diseases); + }; + } + + /** + * This function checks whether the mode of inheritance of the disease + * matches the observed pattern of variants. That is, if the disease is + * autosomal recessive and we have just one heterozygous mutation, then the + * disease is probably not the correct diagnosis, and we assign it a factor + * of 0.5. Note that hemizygous X chromosomal variants are usually called as + * homozygous ALT in VCF files, and thus it is not reliable to distinguish + * between X-linked recessive and dominant inheritance. Therefore, we return + * 1 for any gene with X-linked inheritance if the disease in question is + * listed as X chromosomal. + */ + private ToDoubleFunction scoreInheritanceMode(Gene gene) { + return inheritanceMode -> { + /* inheritance unknown (not mentioned in OMIM or not annotated correctly in HPO */ + if (inheritanceMode == InheritanceMode.UNKNOWN) { + return DEFAULT_SCORE; + /* Y chromosomal, rare. */ + } else if (inheritanceMode == InheritanceMode.Y_LINKED) { + return DEFAULT_SCORE; + /* mitochondrial. */ + } else if (inheritanceMode == InheritanceMode.MITOCHONDRIAL) { + return DEFAULT_SCORE; + /* gene only associated with somatic mutations */ + } else if (inheritanceMode == InheritanceMode.SOMATIC) { + return 0.5d; + /* gene only associated with polygenic */ + } else if (inheritanceMode == InheritanceMode.POLYGENIC) { + return 0.5d; + /* No mode of inheritance is defined (UNDEFINED) */ + } else if (gene.getInheritanceModes().isEmpty()) { + return DEFAULT_SCORE; + /* inheritance of disease is dominant or both (dominant/recessive) */ + } else if (gene.isCompatibleWithDominant() && inheritanceMode.isCompatibleWithDominant()) { + return DEFAULT_SCORE; + /* inheritance of disease is recessive or both (dominant/recessive) */ + } else if (gene.isCompatibleWithRecessive() && inheritanceMode.isCompatibleWithRecessive()) { + return DEFAULT_SCORE; + } else if (gene.isXChromosomal() && inheritanceMode.isXlinked()) { + return DEFAULT_SCORE; + } else { + return 0.5d; + } + }; + } + + @Override + public int hashCode() { + return Objects.hashCode(OMIMPriority.class.getName()); + } + + @Override + public boolean equals(Object obj) { + return obj != null && getClass() == obj.getClass(); + } + + @Override + public String toString() { + return "OmimPrioritiser{}"; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityResult.java new file mode 100644 index 000000000..2966787a0 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityResult.java @@ -0,0 +1,141 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; +import org.monarchinitiative.exomiser.core.prioritisers.model.InheritanceMode; + +import java.util.List; + +/** + * This class is used to annotate with OMIM data based on the link between the + * entrez Gene and the OMIM data in the exomizer database table called omim. + * There is no actual filtering out of variants. + * + * @author Peter N Robinson + * @version 0.08 (9 February, 2014). + */ +public class OMIMPriorityResult extends AbstractPriorityResult { + + private final List diseases; + + public OMIMPriorityResult(int geneId, String geneSymbol, double score, List diseases) { + super(PriorityType.OMIM_PRIORITY, geneId, geneSymbol, score); + this.diseases = diseases; + } + + /** + * @return A list of diseases associated with this gene. + */ + public List getAssociatedDiseases() { + return diseases; + } + + /** + * @return 1.0 if the inheritance pattern of the diseases associated with the + * gene match the variants, otherwise 0.5. For instance, if the gene has a + * homozygous variant, than a disease with autosomal recessive inheritance + * would get a score of 1.0. If the gene only has one het variant, the + * disease would get a score of 0.5. + */ + @Override + public double getScore() { + return score; + } + + /** + * @return A string with HTML code producing a bullet list of OMIM + * entries/links. + */ + @Override + public String getHTMLCode() { + StringBuilder sb = new StringBuilder("
\n"); + if (hasNoKnownDisease()) { + return "
No known disease
"; + } + sb.append("
Known diseases"); + if (this.score < 1f) { + sb.append(" - observed variants incompatible with mode of inheritance"); + } + sb.append(":
\n"); + for (Disease disease : diseases) { + String display = makeDisplayString(disease); + sb.append("
" + display + "
\n"); + } + sb.append("
"); + return sb.toString(); + } + + private boolean hasNoKnownDisease() { + return diseases.isEmpty(); + } + + private String makeDisplayString(Disease disease) { + String diseaseId = disease.getDiseaseId(); + if (diseaseId.startsWith("OMIM:")){ + return makeOmimDisplayString(disease); + } + if (diseaseId.startsWith("ORPHA:")) { + return makeOrphanetDisplayString(disease); + } + //default return non-formatted disease id + return String.format("%s %s", disease.getDiseaseId(), disease.getDiseaseName()); + } + + private String makeOmimDisplayString(Disease disease) { + //OMIM:101600 Pfeiffer syndrome - autosomal dominant + //OMIM:10111 Other thing (non-disease) + //OMIM:10111 Other thing, X chromosomal (susceptibility) + String[] phenParts = disease.getDiseaseId().split(":"); + String mimPhenUrl = String.join("", "http://www.omim.org/entry/", phenParts[1]); + String href = href(mimPhenUrl, disease.getDiseaseId()); + + InheritanceMode inheritanceMode = disease.getInheritanceMode(); + Disease.DiseaseType diseaseType = disease.getDiseaseType(); + if (diseaseType == Disease.DiseaseType.DISEASE) { + return String.format("%s %s - %s", href, disease.getDiseaseName(), inheritanceMode.getTerm()); + } + return String.format("%s %s (%s)", href, disease.getDiseaseName(), diseaseType.getValue()); + + } + + private String makeOrphanetDisplayString(Disease disease) { + String[] orphaParts = disease.getDiseaseId().split(":"); + String url = String.join("", "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?lng=en&Expert=", orphaParts[1]); + String href = href(url, disease.getDiseaseId()); + return String.join(" ", href, disease.getDiseaseName()); + } + + private String href(String url, String displayText) { + return String.format("%s", url, displayText); + } + + + @Override + public String toString() { + return "OMIMPriorityResult{" + + "geneId=" + geneId + + ", geneSymbol='" + geneSymbol + '\'' + + ", score=" + score + + ", diseases=" + diseases + + "} "; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriority.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriority.java new file mode 100644 index 000000000..6f24af6f6 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriority.java @@ -0,0 +1,423 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import hpo.HPOutils; +import ontologizer.go.*; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.prioritisers.util.ScoreDistribution; +import org.monarchinitiative.exomiser.core.prioritisers.util.ScoreDistributionContainer; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import similarity.SimilarityUtilities; +import similarity.concepts.ResnikSimilarity; +import similarity.objects.InformationContentObjectSimilarity; +import sonumina.math.graph.SlimDirectedGraphView; + +import java.io.BufferedReader; +import java.io.File; +import java.io.IOException; +import java.nio.file.Files; +import java.nio.file.Paths; +import java.util.*; +import java.util.function.Function; +import java.util.stream.Collectors; +import java.util.stream.Stream; + +import static java.util.stream.Collectors.toMap; + +/** + * Filter variants according to the phenotypic similarity of the specified + * disease to mouse models disrupting the same gene. We use semantic similarity + * calculations in the uberpheno. + * + * The files required for the constructor of this filter should be downloaded + * from: {@code http://purl.obolibrary.org/obo/hp/uberpheno/} + * (HSgenes_crossSpeciesPhenoAnnotation.txt, crossSpeciesPheno.obo) + * + * @author Sebastian Köhler + * @version 0.06 (6 December, 2013) + */ +public class PhenixPriority implements Prioritiser { + + private static final Logger logger = LoggerFactory.getLogger(PhenixPriority.class); + + private static final PriorityType PRIORITY_TYPE = PriorityType.PHENIX_PRIORITY; + /** + * The HPO as Ontologizer-Ontology object + */ + private Ontology hpo; + + /** + * The semantic similarity measure used to calculate phenotypic similarity + */ + private InformationContentObjectSimilarity similarityMeasure; + + private static final double DEFAULT_SCORE = 0; + + private Map> geneId2annotations; + + private boolean symmetric; + /** + * Path to the directory that has the files needed to calculate the score + * distribution. + */ + private String scoredistributionFolder; + +//counters for stats + /** + * A counter of the number of genes that could not be found in the database + * as being associated with a defined disease gene. + */ + private int offTargetGenes = 0; + /** + * Total number of genes used for the query, including genes with no + * associated disease. + */ + private int analysedGenes; + /** + * Keeps track of the maximum semantic similarity score to date + */ + private double maxSemSim = 0d; + + + /** + * Create a new instance of the PhenixPriority. + * + * @param scoreDistributionFolder Folder which contains the score + * distributions (e.g. 3.out, 3_symmetric.out, 4.out, 4_symmetric.out). It + * must also contain the files hp.obo (obtained from + * {@code http://compbio.charite.de/hudson/job/hpo/}) and + * ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt-file (obtained from + * {@code http://compbio.charite.de/hudson/job/hpo.annotations.monthly/lastSuccessfulBuild/artifact/annotation/}). + * @param symmetric Flag to indicate if the semantic similarity score should + * be calculated using the symmetrix formula. + * @see Uberpheno + * Hudson page + */ + public PhenixPriority(String scoreDistributionFolder, boolean symmetric) { + + if (!scoreDistributionFolder.endsWith(File.separator)) { + scoreDistributionFolder += File.separator; + } + this.scoredistributionFolder = scoreDistributionFolder; + this.symmetric = symmetric; + + String hpoOboFile = String.format("%s%s", scoreDistributionFolder, "hp.obo"); + String hpoAnnotationFile = String.format("%s%s", scoreDistributionFolder, "ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt"); + //The phenixData directory must contain the files "hp.obo", "ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt" + //as well as the score distribution files "*.out", all of which can be downloaded from the HPO hudson server. + this.hpo = parseOntology(hpoOboFile); + //The HPO as SlimDirectedGraph (fast access to ancestors etc.) + SlimDirectedGraphView hpoSlim = hpo.getSlimGraphView(); + this.geneId2annotations = parseAnnotations(hpoAnnotationFile, hpo, hpoSlim); + this.similarityMeasure = calculateInformationContentSimilarityMeasures(symmetric, hpo, hpoSlim, geneId2annotations); + } + + /** + * STUB CONSTRUCTOR - ONLY USED FOR TESTING PURPOSES TO AVOID NULL POINTERS FROM ORIGINAL CONSTRUCTOR. DO NOT USE FOR PRODUCTION CODE!!!! + * @param symmetric + */ + protected PhenixPriority(boolean symmetric) { + this.symmetric = symmetric; + } + + private InformationContentObjectSimilarity calculateInformationContentSimilarityMeasures(boolean symmetric, Ontology hpo, SlimDirectedGraphView hpoSlim, Map> geneId2annotations) { + Map term2ic = calculateTermIC(hpo, hpoSlim, geneId2annotations); + ResnikSimilarity resnik = new ResnikSimilarity(hpo, (HashMap) term2ic); + return new InformationContentObjectSimilarity(resnik, symmetric, false); + } + + /** + * Parses the human-phenotype-ontology.obo file (or equivalently, the hp.obo + * file from our Hudosn server). + * + * @param hpoOboFile path to the hp.obo file. + */ + private Ontology parseOntology(String hpoOboFile) { + OBOParser oboParser = new OBOParser(hpoOboFile, OBOParser.PARSE_XREFS); + + try { + String parseInfo = oboParser.doParse(); + logger.info(parseInfo); + } catch (IOException | OBOParserException e) { + logger.error("Error parsing HPO OBO file", e); + } + + TermContainer termContainer = new TermContainer(oboParser.getTermMap(), oboParser.getFormatVersion(), oboParser.getDate()); + Ontology hpoOntology = new Ontology(termContainer); + hpoOntology.setRelevantSubontology(termContainer.get(HPOutils.organAbnormalityRootId).getName()); + return hpoOntology; + } + + /** + * Parse the HPO phenotype annotation file (e.g., phenotype_annotation.tab). + * The point of this is to get the links between diseases and HPO phenotype + * terms. The hpoAnnotationFile is The + * ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt-file + * + * @param hpoAnnotationFile path to the file + */ + private Map> parseAnnotations(String hpoAnnotationFile, Ontology hpo, SlimDirectedGraphView hpoSlim) { + Map> geneAnnotations = new HashMap<>(); + logger.info("Parsing Annotations file {}", hpoAnnotationFile); + + try (BufferedReader bufferedReader = Files.newBufferedReader(Paths.get(hpoAnnotationFile))) { + String line; + while ((line = bufferedReader.readLine()) != null) { + if (line.startsWith("#")) { + continue; + } + + String[] split = line.split("\t"); + String entrez = split[0]; + Term term = null; + try { + /* split[4] is the HPO term field of an annotation line. */ + term = hpo.getTermIncludingAlternatives(split[3]); + } catch (IllegalArgumentException e) { + logger.error("Unable to get term for line \n{}\n", line); + logger.error("The offending field was '{}'", split[3]); + for (int k = 0; k < split.length; ++k) { + logger.error("{} '{}'", k, split[k]); + } + logger.error("", e); + } + if (term != null) { + geneAnnotations.computeIfAbsent(entrez, annotations -> new ArrayList<>()).add(term); + } + } + } catch (IOException e) { + logger.error("Error parsing annotation file {}", hpoAnnotationFile, e); + } + + // cleanup annotations + for (Map.Entry> entry : geneAnnotations.entrySet()) { + String entrezId = entry.getKey(); + List uniqueTerms = entry.getValue().stream().distinct().collect(Collectors.toCollection(ArrayList::new)); + List mostSpecificTerms = HPOutils.cleanUpAssociation((ArrayList) uniqueTerms, hpoSlim, hpo.getRootTerm()); + geneAnnotations.put(entrezId, mostSpecificTerms); + } + logger.info("Made HPO annotations for {} genes", geneAnnotations.size()); + return geneAnnotations; + } + + private Map calculateTermIC(Ontology ontology, SlimDirectedGraphView hpoSlim, Map> geneId2annotations) { + + // prepare IC computation + // here we store which objects have been annotated with this term + final Map> annotationTerm2geneIds = new HashMap<>(); + for (Map.Entry> entry : geneId2annotations.entrySet()) { + String entrezId = entry.getKey(); + List annotations = entry.getValue(); + for (Term annot : annotations) { + List termAndAncestors = hpoSlim.getAncestors(annot); + for (Term term : termAndAncestors) { + annotationTerm2geneIds.computeIfAbsent(term, objectsAnnotatedByTerm -> new HashSet<>()).add(entrezId); + } + } + } + + Map termFrequencies = annotationTerm2geneIds.entrySet().stream() + .collect(toMap(Map.Entry::getKey, entry -> entry.getValue().size())); + + Term root = ontology.getRootTerm(); + int maxFreq = termFrequencies.get(root); + double ICzeroCountTerms = -1 * (Math.log(1 / (double) maxFreq)); + + Map term2informationContent = SimilarityUtilities.caculateInformationContent(maxFreq, (HashMap) termFrequencies); + int frequencyZeroCounter = 0; + for (Term t : ontology) { + if (!termFrequencies.containsKey(t)) { + ++frequencyZeroCounter; + term2informationContent.put(t, ICzeroCountTerms); + } + } + + logger.info("WARNING: Frequency of {} terms was zero!! Set IC of these to : {}", frequencyZeroCounter, ICzeroCountTerms); + return term2informationContent; + } + + /** + * Flag to output results of filtering against Uberpheno data. + */ + @Override + public PriorityType getPriorityType() { + return PRIORITY_TYPE; + } + + @Override + public Stream prioritise(List hpoIds, List genes) { + + if (hpoIds.isEmpty()) { + throw new PhenixException("Please supply some HPO terms. PhenIX is unable to prioritise genes without these."); + } + + List hpoQueryTerms = makeHpoQueryTerms(hpoIds); + logger.info("Created HPO query terms {}", hpoQueryTerms); + + ScoreDistributionContainer scoredistributionContainer = new ScoreDistributionContainer(scoredistributionFolder, symmetric, hpoQueryTerms.size()); + + Map geneScores = genes.stream().collect(toMap(Function.identity(), scoreGene(hpoQueryTerms, scoredistributionContainer))); + + double maxSemSimScore = geneScores.values().stream().mapToDouble(PhenixScore::getSemanticSimilarityScore).max().orElse(DEFAULT_SCORE); + double maxNegLogP = geneScores.values().stream().mapToDouble(PhenixScore::getNegativeLogP).max().orElse(DEFAULT_SCORE); + double normalisationFactor = calculateNormalisationFactor(maxSemSimScore); + + logger.info("Data investigated in HPO for {} genes. No data for {} genes", genes.size(), geneId2annotations.keySet().size()); + return geneScores.entrySet().stream() + .map(entry -> { + Gene gene = entry.getKey(); + PhenixScore phenixScore = entry.getValue(); + double score = phenixScore.getSemanticSimilarityScore() * normalisationFactor; + return new PhenixPriorityResult(gene.getEntrezGeneID(), gene.getGeneSymbol(), score, phenixScore.getSemanticSimilarityScore(), phenixScore.getNegativeLogP()); + }); + } + + private List makeHpoQueryTerms(List hpoIds) { + return hpoIds.stream() + .map(termIdString -> { + Term term = hpo.getTermIncludingAlternatives(termIdString); + if (term == null) { + logger.error("Unrecognised HPO input term {}. This will not be used in the analysis.", termIdString); + } + return term; + }) + .filter(Objects::nonNull) + .distinct() + .collect(Collectors.toList()); + } + + private Function scoreGene(List queryTerms, ScoreDistributionContainer scoredistributionContainer) { + return gene -> { + int entrezGeneId = gene.getEntrezGeneID(); + String geneIdString = Integer.toString(entrezGeneId); + + if (!geneId2annotations.containsKey(geneIdString)) { + return new PhenixScore(DEFAULT_SCORE, DEFAULT_SCORE); + } + + List geneAnnotations = geneId2annotations.get(geneIdString); + double semanticSimilarityScore = similarityMeasure.computeObjectSimilarity( (ArrayList) queryTerms, (ArrayList) geneAnnotations); + + if (Double.isNaN(semanticSimilarityScore)) { + logger.error("Score was NaN for geneId: {} : ", entrezGeneId, queryTerms); + } + ScoreDistribution scoreDist = scoredistributionContainer.getDistribution(geneIdString); + + double negLogP = calculateNegLogP(semanticSimilarityScore, scoreDist); + return new PhenixScore(semanticSimilarityScore, negLogP); + }; + } + + private double calculateNegLogP(double semanticSimilarityScore, ScoreDistribution scoreDist) { + if (scoreDist == null) { + return DEFAULT_SCORE; + } else { + double rawPvalue = scoreDist.getPvalue(semanticSimilarityScore, 1000d); + // Negative log of p value : most significant get highest score + return Math.log(rawPvalue) * -1.0; + } + } + + /** + * The gene relevance scores are to be normalized to lie between zero and + * one. This function, which relies upon the variable {@link #maxSemSim} + * being set in {@link #scoreGene}, divides each score by + * {@link #maxSemSim}, which has the effect of putting the phenomizer scores + * in the range [0..1]. Note that for now we are using the semantic + * similarity scores, but we should also try the P value version (TODO). + * Note that this is not the same as rank normalization! + */ + private double calculateNormalisationFactor(double maxSemSimScore) { + if (maxSemSimScore < 1) { + return 1d; + } + return 1d / maxSemSimScore; + } + + + private static class PhenixException extends RuntimeException { + + private PhenixException(String message) { + super(message); + } + } + +//TODO move this to the messages +// /** +// * @return an ul list with summary of phenomizer prioritization. +// */ +// @Override +// public String getHTMLCode() { +// String s = String.format("Phenomizer: %d genes were evaluated; no phenotype data available for %d of them", +// this.analysedGenes, this.offTargetGenes); +// String t = null; +// if (symmetric) { +// t = String.format("Symmetric Phenomizer query with %d terms was performed", this.numberQueryTerms); +// } else { +// t = String.format("Asymmetric Phenomizer query with %d terms was performed", this.numberQueryTerms); +// } +// String u = String.format("Maximum semantic similarity score: %.2f, maximum negative log. of p-value: %.2f", this.maxSemSim, this.maxNegLogP); +// return String.format("
  • %s
  • %s
  • %s
\n", s, t, u); +// +// } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + PhenixPriority that = (PhenixPriority) o; + return symmetric == that.symmetric; + } + + @Override + public int hashCode() { + return Objects.hash(PhenixPriority.class.getName(), symmetric); + } + + @Override + public String toString() { + return "PhenixPriority{" + + "symmetric=" + symmetric + + '}'; + } + + //Tuple-esq container + private class PhenixScore { + + private final double semanticSimilarityScore; + private final double negativeLogP; + + PhenixScore(double semanticSimilarityScore, double negativeLogP) { + this.semanticSimilarityScore = semanticSimilarityScore; + this.negativeLogP = negativeLogP; + } + + double getSemanticSimilarityScore() { + return semanticSimilarityScore; + } + + double getNegativeLogP() { + return negativeLogP; + } + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriorityResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriorityResult.java new file mode 100644 index 000000000..d9a6b9b85 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriorityResult.java @@ -0,0 +1,57 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +/** + * Semantic Similarity in HPO + * + * @author Sebastian Köhler + * @author Jules Jacobsen + * @version 0.05 (6 January, 2014). + */ +public class PhenixPriorityResult extends AbstractPriorityResult { + + /** + * The semantic similarity score as implemented in PhenIX (also know as + * Phenomizer). Note that this is not the p-value methodology in that paper, + * but merely the simple semantic similarity score. + */ + private double hpoSemSimScore; + /** + * The negative logarithm of the p-value. e.g., 10 means p=10^{-10} + */ + private final double negativeLogP; + + public PhenixPriorityResult(int geneId, String geneSymbol, double score, double semanticSimilarityScore, double negLogP) { + super(PriorityType.PHENIX_PRIORITY, geneId, geneSymbol, score); + this.hpoSemSimScore = semanticSimilarityScore; + this.negativeLogP = negLogP; + } + + /** + */ + @Override + public String getHTMLCode() { + return String.format("
PhenIX semantic similarity score: %.2f (p-value: %f)
", + this.hpoSemSimScore, Math.exp(-1 * this.negativeLogP)); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriority.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriority.java new file mode 100644 index 000000000..b5484992d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriority.java @@ -0,0 +1,149 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.google.common.collect.ImmutableSet; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.phenotype.*; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; +import org.monarchinitiative.exomiser.core.prioritisers.service.PriorityService; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.time.Duration; +import java.time.Instant; +import java.util.*; +import java.util.function.Function; +import java.util.stream.Stream; + +import static java.util.Comparator.comparingDouble; +import static java.util.stream.Collectors.*; + +/** + * Filter variants according to the phenotypic similarity of the specified + * clinical phenotypes to mouse models disrupting the same gene. We use MGI + * annotated phenotype data and the Phenodigm/OWLSim algorithm. The filter is + * implemented with an SQL query. + *

+ * This class prioritizes the genes that have survived the initial VCF filter + * (i.e., it is use on genes for which we have found rare, potentially + * pathogenic variants). + *

+ * + * @author Damian Smedley + * @author Jules Jacobsen + * @version 0.05 (April 6, 2013) + */ +public class PhivePriority implements Prioritiser { + + private static final Logger logger = LoggerFactory.getLogger(PhivePriority.class); + + private static final PriorityType PRIORITY_TYPE = PriorityType.PHIVE_PRIORITY; + private static final float NO_PHENOTYPE_HIT_SCORE = 0.1f; + static final float NO_MOUSE_MODEL_SCORE = 0.6f; + + private final PriorityService priorityService; + + public PhivePriority(PriorityService priorityService) { + this.priorityService = priorityService; + } + + /** + * Flag to output results of filtering against PhenoDigm data. + */ + @Override + public PriorityType getPriorityType() { + return PRIORITY_TYPE; + } + + @Override + public Stream prioritise(List hpoIds, List genes) { + logger.info("Starting {}", PRIORITY_TYPE); + + List hpoPhenotypeTerms = priorityService.makePhenotypeTermsFromHpoIds(hpoIds); + PhenotypeMatcher humanMousePhenotypeMatcher = priorityService.getPhenotypeMatcherForOrganism(hpoPhenotypeTerms, Organism.MOUSE); + + Set wantedGeneIds = genes.stream().map(Gene::getEntrezGeneID).collect(ImmutableSet.toImmutableSet()); + + Set modelsToScore = priorityService.getModelsForOrganism(Organism.MOUSE).stream() + .filter(model -> wantedGeneIds.contains(model.getEntrezGeneId())) + .collect(ImmutableSet.toImmutableSet()); + + List scoredModels = scoreModels(humanMousePhenotypeMatcher, modelsToScore); + + //n.b. this will contain models but with a phenotype score of zero + Map> geneModelPhenotypeMatches = scoredModels.parallelStream() +// .filter(model -> model.getScore() > 0) + .collect(groupingByConcurrent(GeneModelPhenotypeMatch::getEntrezGeneId, maxBy(comparingDouble(GeneModelPhenotypeMatch::getScore)))); + + return genes.stream().map(getPhivePriorityResult(geneModelPhenotypeMatches)); + } + + private Function getPhivePriorityResult(Map> geneModelPhenotypeMatches) { + return gene -> geneModelPhenotypeMatches.getOrDefault(gene.getEntrezGeneID(), Optional.empty()) + .map(makeModelPhivePriorityResult()) + //This is set to 0.6 otherwise the performance is poor for genes with no mouse models. + //The rankings are quite different to hiPhive because of this - HiPhive uses 0 if there are no models. + //n.b. this ranks genes with no model higher than those with a model with a score of zero. + .orElse(new PhivePriorityResult(gene.getEntrezGeneID(), gene.getGeneSymbol(), NO_MOUSE_MODEL_SCORE, null)); + } + + private Function makeModelPhivePriorityResult() { + return modelPhenotypeMatch -> new PhivePriorityResult(modelPhenotypeMatch.getEntrezGeneId(), modelPhenotypeMatch.getHumanGeneSymbol(), modelPhenotypeMatch.getScore(), modelPhenotypeMatch); + } + + private List scoreModels(PhenotypeMatcher organismPhenotypeMatcher, Collection models) { + Organism organism = organismPhenotypeMatcher.getOrganism(); + + ModelScorer modelScorer = PhenodigmModelScorer.forSingleCrossSpecies(organismPhenotypeMatcher); + + logger.info("Scoring {} models", organism); + Instant timeStart = Instant.now(); + //running this in parallel here can cut the overall time for this method in half or better - ~650ms -> ~350ms on Pfeiffer test set. + List geneModelPhenotypeMatches = models.parallelStream() + .map(model -> { + ModelPhenotypeMatch score = modelScorer.scoreModel(model); + return new GeneModelPhenotypeMatch(score.getScore(), model, score.getBestPhenotypeMatches()); + }) + .collect(toList()); + + Duration duration = Duration.between(timeStart, Instant.now()); + logger.info("Scored {} {} models - {} ms", models.size(), organism, duration.toMillis()); + return geneModelPhenotypeMatches; + } + + @Override + public int hashCode() { + return Objects.hashCode(PhivePriority.class.getName()); + } + + @Override + public boolean equals(Object obj) { + return obj != null && getClass() == obj.getClass(); + } + + @Override + public String toString() { + return "PhivePriority{}"; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityResult.java new file mode 100644 index 000000000..06462661d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityResult.java @@ -0,0 +1,122 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; + +import java.util.Objects; + +/** + * Filter Variants on the basis of OWLSim phenotypic comparisons between the HPO + * clinical phenotypes associated with the disease being sequenced and MP + * annotated MGI mouse models. The MGIPhenodigmTriage is created by the + * MGIPhenodigmFilter, one for each tested variant. The MGIPhenodigmTriage + * object can be used to ask whether the variant passes the filter, in this case + * whether it the mouse gene scores greater than the threshold in. If no + * information is available the filter is not applied (ergo the Variant does not + * fail the filter). + *

+ * This code was extended on Feb 1, 2013 to show links to the MGI webpage for + * the model in question. + * + * @author Damian Smedley + * @author Jules Jacobsen + * @version 0.06 (April 22, 2013). + */ +public class PhivePriorityResult extends AbstractPriorityResult { + + /** + * The MGI id of the model most similar to the gene being analysed. For + * instance, the MGI id MGI:101757 corresponding to the webpage + * {@code http://www.informatics.jax.org/marker/MGI:101757} describes the + * gene Cfl1 (cofilin 1, non-muscle) and the phenotypic features associated + * with the several mouse models that have been made to investigate this + * gene. + */ + private final GeneModelPhenotypeMatch geneModelPhenotypeMatch; + + /** + * @param geneSymbol The corresponding gene symbol, e.g., Gfl1 + * @param score the phenodigm score for this gene as calculated by OWLsim. This score indicates the + * similarity between a humam disease and the phenotype of a genetically + * modified mouse model. + * @param geneModelPhenotypeMatch the mouse model evidence for this result. + */ + public PhivePriorityResult(int geneId, String geneSymbol, double score, GeneModelPhenotypeMatch geneModelPhenotypeMatch) { + super(PriorityType.PHIVE_PRIORITY, geneId, geneSymbol, score); + this.geneModelPhenotypeMatch = geneModelPhenotypeMatch; + } + + public GeneModelPhenotypeMatch getGeneModelPhenotypeMatch() { + return geneModelPhenotypeMatch; + } + + /** + * @return HTML code with score the Phenodigm score for the current gene or + * a message if no MGI data was found. + */ + @JsonIgnore + @Override + public String getHTMLCode() { + if (geneModelPhenotypeMatch == null) { + return "

No mouse model for this gene
"; + } else { + String link = makeMgiGeneLink((GeneOrthologModel) geneModelPhenotypeMatch.getModel()); + return String.format("
Mouse phenotype data for %s
", link); + } + } + + /** + * This function creates an HTML anchor link for a MGI id, e.g., for + * MGI:101757 it will create a link to + * {@code http://www.informatics.jax.org/marker/MGI:101757}. + */ + private String makeMgiGeneLink(GeneOrthologModel geneOrthologModel) { + String url = String.format("http://www.informatics.jax.org/marker/%s", geneOrthologModel.getModelGeneId()); + return String.format("%s", url, geneOrthologModel.getModelGeneSymbol()); + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof PhivePriorityResult)) return false; + if (!super.equals(o)) return false; + PhivePriorityResult that = (PhivePriorityResult) o; + return Objects.equals(geneModelPhenotypeMatch, that.geneModelPhenotypeMatch); + } + + @Override + public int hashCode() { + return Objects.hash(super.hashCode(), geneModelPhenotypeMatch); + } + + @Override + public String toString() { + return "PhivePriorityResult{" + + "geneId=" + geneId + + ", geneSymbol='" + geneSymbol + '\'' + + ", score=" + score + + ", geneModelPhenotypeMatch=" + geneModelPhenotypeMatch + + "}"; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/Prioritiser.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/Prioritiser.java new file mode 100644 index 000000000..c4b0b03a8 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/Prioritiser.java @@ -0,0 +1,85 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.monarchinitiative.exomiser.core.analysis.AnalysisStep; +import org.monarchinitiative.exomiser.core.model.Gene; + +import java.util.List; +import java.util.Map; +import java.util.Optional; +import java.util.stream.Stream; + +import static java.util.Comparator.comparingDouble; +import static java.util.stream.Collectors.groupingBy; +import static java.util.stream.Collectors.maxBy; + +/** + * This interface is implemented by classes that perform prioritisation of genes + * (i.e., {@link org.monarchinitiative.exomiser.core.model.Gene Gene} objects). In contrast to the classes + * that implement {@code org.monarchinitiative.exomiser.filter.Filter}, which remove variants from + * further consideration (e.g., because they are not predicted to be at all + * pathogenic), FilterType is intended to work on genes (predict the relevance of + * the gene to the disease, without taking the nature or pathogenicity of any + * variant into account). + *

+ * It is expected that the Exomiser will combine the evaluations of the Filter + * and the FilterType evaluations in order to reach a final ranking of the genes + * and variants into candidate disease-causing mutations. + * + * @author Peter N Robinson + * @author Jules Jacobsen + * @version 0.13 (13 May, 2013). + * @see org.monarchinitiative.exomiser.core.filters.Filter + */ +public interface Prioritiser extends AnalysisStep { + + /** + * Apply a prioritization algorithm to a list of {@link Gene Gene} objects ranking the results against the similarity + * to the input HPO ids. + * This will have the side effect of adding the PriorityResult to the Gene object. + * + * @param hpoIds + * @param genes + */ + default void prioritizeGenes(List hpoIds, List genes) { + Map> results = prioritise(hpoIds, genes) + .collect(groupingBy(PriorityResult::getGeneId, maxBy(comparingDouble(PriorityResult::getScore)))); + + genes.forEach(gene -> results.getOrDefault(gene.getEntrezGeneID(), Optional.empty()) + .ifPresent(gene::addPriorityResult)); + } + + /** + * Applies the prioritiser to the list of genes and returns a Stream of PriorityResult from the Prioritiser. + * + * @param hpoIds + * @param genes + * @return the stream of results. + */ + Stream prioritise(List hpoIds, List genes); + + /** + * @return an enum constant representing the type of the implementing class. + */ + PriorityType getPriorityType(); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PrioritiserSettings.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PrioritiserSettings.java new file mode 100644 index 000000000..19e464769 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PrioritiserSettings.java @@ -0,0 +1,52 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import java.util.List; + +/** + * Settings parameters required by the prioritisers. + * + * @author Jules Jacobsen + */ +public interface PrioritiserSettings { + + static PrioritiserSettingsImpl.PrioritiserSettingsBuilder builder() { + return PrioritiserSettingsImpl.builder(); + } + + PriorityType getPrioritiserType(); + + String getDiseaseId(); + + String getCandidateGene(); + + List getHpoIds(); + + List getSeedGeneList(); + + String getHiPhiveParams(); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PrioritiserSettingsImpl.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PrioritiserSettingsImpl.java new file mode 100644 index 000000000..9782d17b8 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PrioritiserSettingsImpl.java @@ -0,0 +1,128 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import java.util.ArrayList; +import java.util.List; + +class PrioritiserSettingsImpl implements PrioritiserSettings { + + private final PriorityType priorityType; + private final String diseaseId; + private final String candidateGeneSymbol; + private final String hiPhiveParams; + private final List hpoIds; + private final List seedGenes; + + public static PrioritiserSettingsBuilder builder() { + return new PrioritiserSettingsBuilder(); + } + + public static class PrioritiserSettingsBuilder { + + private PriorityType priorityType = PriorityType.NONE; + private String diseaseId = ""; + private String candidateGeneSymbol = ""; + private String hiPhiveParams = ""; + private List hpoIds = new ArrayList<>(); + private List seedGenes = new ArrayList<>(); + + private PrioritiserSettingsBuilder() {} + + public PrioritiserSettingsBuilder usePrioritiser(PriorityType priorityType) { + this.priorityType = priorityType; + return this; + } + + public PrioritiserSettingsBuilder hpoIdList(List hpoIds) { + this.hpoIds = hpoIds; + return this; + } + + public PrioritiserSettingsBuilder diseaseId(String diseaseId) { + this.diseaseId = diseaseId; + return this; + } + + public PrioritiserSettingsBuilder candidateGene(String candidateGeneSymbol) { + this.candidateGeneSymbol = candidateGeneSymbol; + return this; + } + + public PrioritiserSettingsBuilder hiPhiveParams(String hiPhiveParams) { + this.hiPhiveParams = hiPhiveParams; + return this; + } + + public PrioritiserSettingsBuilder seedGeneList(List seedGenes) { + this.seedGenes = seedGenes; + return this; + } + + public PrioritiserSettingsImpl build() { + return new PrioritiserSettingsImpl(this); + } + } + + private PrioritiserSettingsImpl(PrioritiserSettingsBuilder builder) { + priorityType = builder.priorityType; + diseaseId = builder.diseaseId; + candidateGeneSymbol = builder.candidateGeneSymbol; + hiPhiveParams = builder.hiPhiveParams; + hpoIds = builder.hpoIds; + seedGenes = builder.seedGenes; + } + + @Override + public PriorityType getPrioritiserType() { + return priorityType; + } + + @Override + public String getDiseaseId() { + return diseaseId; + } + + @Override + public String getCandidateGene() { + return candidateGeneSymbol; + } + + @Override + public List getHpoIds() { + return hpoIds; + } + + @Override + public List getSeedGeneList() { + return seedGenes; + } + + @Override + public String getHiPhiveParams() { + return hiPhiveParams; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactory.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactory.java new file mode 100644 index 000000000..8c6e226ee --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactory.java @@ -0,0 +1,57 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import java.util.List; + +/** + * + * @author Jules Jacobsen + */ +public interface PriorityFactory { + + /** + * Returns a Prioritiser of the given type, ready to run according to the + * settings provided. Will return a non-functional prioritiser in cases + * where the type is not recognised. + * + * @param settings + * @return + */ + Prioritiser makePrioritiser(PrioritiserSettings settings); + + OMIMPriority makeOmimPrioritiser(); + + PhenixPriority makePhenixPrioritiser(); + + PhivePriority makePhivePrioritiser(); + + ExomeWalkerPriority makeExomeWalkerPrioritiser(List entrezSeedGenes); + + HiPhivePriority makeHiPhivePrioritiser(HiPhiveOptions hiPhiveOptions); + + List getHpoIdsForDiseaseId(String diseaseId); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryImpl.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryImpl.java new file mode 100644 index 000000000..4643e354d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryImpl.java @@ -0,0 +1,139 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.monarchinitiative.exomiser.core.prioritisers.service.PriorityService; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrix; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.context.annotation.Lazy; +import org.springframework.stereotype.Component; + +import java.nio.file.Path; +import java.util.Collections; +import java.util.List; + +/** + * Factory class for handling creation of FilterType objects. + * + * @author Jules Jacobsen + */ +@Component +public class PriorityFactoryImpl implements PriorityFactory { + + private static final Logger logger = LoggerFactory.getLogger(PriorityFactoryImpl.class); + + private final PriorityService priorityService; + private final DataMatrix randomWalkMatrix; + private final Path phenixDataDirectory; + + // The randomWalkMatrix takes about 1min to load into RAM and isn't always required, so @Lazy is used to defer loading + // until it is required. + @Lazy + @Autowired + public PriorityFactoryImpl(PriorityService priorityService, DataMatrix randomWalkMatrix, Path phenixDataDirectory) { + this.priorityService = priorityService; + this.randomWalkMatrix = randomWalkMatrix; + this.phenixDataDirectory = phenixDataDirectory; + } + + /** + * Returns a Prioritiser of the given type, ready to run according to the + * settings provided. Will return a non-functional prioritiser in cases + * where the type is not recognised. + * + * @param settings + * @return + */ + @Override + public Prioritiser makePrioritiser(PrioritiserSettings settings) { + PriorityType priorityType = settings.getPrioritiserType(); + List entrezSeedGenes = settings.getSeedGeneList(); + String diseaseId = settings.getDiseaseId(); + String candidateGene = settings.getCandidateGene(); + String hiPhiveParams = settings.getHiPhiveParams(); + + switch (priorityType) { + case OMIM_PRIORITY: + return makeOmimPrioritiser(); + case PHENIX_PRIORITY: + return makePhenixPrioritiser(); + case HIPHIVE_PRIORITY: + HiPhiveOptions hiPhiveOptions = HiPhiveOptions.builder() + .diseaseId(diseaseId) + .candidateGeneSymbol(candidateGene) + .runParams(hiPhiveParams) + .build(); + return makeHiPhivePrioritiser(hiPhiveOptions); + case PHIVE_PRIORITY: + return makePhivePrioritiser(); + case EXOMEWALKER_PRIORITY: + return makeExomeWalkerPrioritiser(entrezSeedGenes); + case NONE: + return new NoneTypePrioritiser(); + default: + logger.warn("Prioritiser: '{}' not supported. Returning '{}' type", priorityType, PriorityType.NONE); + return new NoneTypePrioritiser(); + } + + } + + @Override + public List getHpoIdsForDiseaseId(String diseaseId) { + if (diseaseId == null || diseaseId.isEmpty()) { + return Collections.emptyList(); + } + return priorityService.getHpoIdsForDiseaseId(diseaseId); + } + + @Override + public OMIMPriority makeOmimPrioritiser() { + return new OMIMPriority(priorityService); + } + + @Override + public PhenixPriority makePhenixPrioritiser() { + boolean symmetric = false; + return new PhenixPriority(phenixDataDirectory.toString(), symmetric); + } + + @Override + public PhivePriority makePhivePrioritiser() { + return new PhivePriority(priorityService); + } + + @Override + public ExomeWalkerPriority makeExomeWalkerPrioritiser(List entrezSeedGenes) { + return new ExomeWalkerPriority(randomWalkMatrix, entrezSeedGenes); + } + + @Override + public HiPhivePriority makeHiPhivePrioritiser(HiPhiveOptions hiPhiveOptions) { + return new HiPhivePriority(hiPhiveOptions, randomWalkMatrix, priorityService); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityResult.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityResult.java new file mode 100644 index 000000000..b3628b848 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityResult.java @@ -0,0 +1,77 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.monarchinitiative.exomiser.core.model.Gene; + +/** + * Prioritization of Genes results in a relevance score for each tested + * {@link Gene Gene} object. The methods may also annotate the + genes with data (e.g., a link to OMIM or a link to Phenodigm or uberpheno + data. Each prioritization is expected to result on an object of a class that + implements PriorityResult + * + * @author Peter N Robinson + * @author Jules Jacobsen + */ +public interface PriorityResult extends Comparable { + + /** + * @return the gene id for which this result is associated. + */ + int getGeneId(); + + /** + * @return the gene symbol for which this result is associated. + */ + String getGeneSymbol(); + + /** + * @return return a float representation of the prioritiser result with values between 0..1 where zero means no match + * and one is the best match. + */ + double getScore(); + + //TODO: is a PriorityType strictly necessary? Investigate... + PriorityType getPriorityType(); + + /** + * @return HTML code representing this prioritization/relevance score + * @deprecated this should be handled by the writers + */ + @Deprecated + default String getHTMLCode() { + return ""; + } + + /** + * PriorityResults are sorted according to descending numerical value of the score (in other words higher is better) + * and if equal, by natural ordering of the gene symbol. + * @param o + * @return + */ + @Override + default int compareTo(PriorityResult o) { + int scoreComparison = Double.compare(this.getScore(), o.getScore()); + return scoreComparison == 0 ? this.getGeneSymbol().compareTo(o.getGeneSymbol()) : - scoreComparison; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityType.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityType.java new file mode 100644 index 000000000..9b2800922 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityType.java @@ -0,0 +1,42 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +/** + * + * @author Jules Jacobsen + */ +public enum PriorityType { + + //Prioritises against PPI-RandomWalk-proximity and dynamic human, mouse and fish phenotypes + HIPHIVE_PRIORITY, + //Prioritises against PPI-RandomWalk-proximity A.K.A "GeneWanderer" + EXOMEWALKER_PRIORITY, + //Prioritises against human phenotypes A.K.A. "HPO Phenomizer prioritizer" + PHENIX_PRIORITY, + //Prioritises against human-mouse phenotype similarities + PHIVE_PRIORITY, + //Prioritises against OMIM data + OMIM_PRIORITY, + //None - for when you don't want to run any prioritisation + NONE + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DefaultDiseaseDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DefaultDiseaseDao.java new file mode 100644 index 000000000..300743104 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DefaultDiseaseDao.java @@ -0,0 +1,128 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.dao; + +import com.google.common.collect.ImmutableList; +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.stereotype.Repository; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.*; + +/** + * + * @author Jules Jacobsen + */ +@Repository +public class DefaultDiseaseDao implements DiseaseDao { + + private final Logger logger = LoggerFactory.getLogger(DefaultDiseaseDao.class); + + private final DataSource dataSource; + + @Autowired + public DefaultDiseaseDao(DataSource dataSource) { + this.dataSource = dataSource; + } + + @Cacheable(value = "diseaseHp") + @Override + public Set getHpoIdsForDiseaseId(String diseaseId) { + String hpoListString = ""; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement hpoIdsStatement = connection.prepareStatement("SELECT hp_id FROM disease_hp WHERE disease_id = ?") + ) { + hpoIdsStatement.setString(1, diseaseId); + ResultSet rs = hpoIdsStatement.executeQuery(); + rs.next(); + hpoListString = rs.getString(1); + } catch (SQLException e) { + logger.error("Unable to retrieve HPO terms for disease {}", diseaseId, e); + } + List diseaseHpoIds = parseHpoIdListFromString(hpoListString); + logger.info("{} HPO ids retrieved for disease {} - {}", diseaseHpoIds.size(), diseaseId, diseaseHpoIds); + return new TreeSet<>(diseaseHpoIds); + } + + private List parseHpoIdListFromString(String hpoIdsString) { + String[] hpoArray = hpoIdsString.split(","); + List hpoIdList = new ArrayList<>(); + for (String string : hpoArray) { + hpoIdList.add(string.trim()); + } + return hpoIdList; + } + + @Cacheable(value="diseases") + @Override + public List getDiseaseDataAssociatedWithGeneId(int geneId) { + String query = "SELECT gene_id as entrez_id, symbol as human_gene_symbol, d.disease_id as disease_id, d.diseasename as disease_name, d.TYPE AS disease_type, d.INHERITANCE as inheritance_code, hp_id as pheno_ids FROM entrez2sym e, disease_hp dhp, disease d WHERE dhp.disease_id = d.DISEASE_ID and e.entrezid = d.GENE_ID and d.GENE_ID = ?"; + + try (Connection connection = dataSource.getConnection(); + PreparedStatement statement = setQueryGeneId(connection, query, geneId); + ResultSet rs = statement.executeQuery()){ + + return processDiseaseResults(rs); + + } catch (SQLException e) { + logger.error("Unable to execute query '{}' for geneId: '{}'", query, geneId, e); + } + return Collections.emptyList(); + } + + private PreparedStatement setQueryGeneId(Connection connection, String query, int geneId) throws SQLException { + PreparedStatement ps = connection.prepareStatement(query); + ps.setInt(1, geneId); + return ps; + } + + private List processDiseaseResults(ResultSet rs) throws SQLException{ + ImmutableList.Builder listBuilder = ImmutableList.builder(); + while(rs.next()) { + List phenotypes = ImmutableList.copyOf(rs.getString("pheno_ids").split(",")); + Disease disease = Disease.builder() + .diseaseId(rs.getString("disease_id")) + .diseaseName(rs.getString("disease_name")) + .associatedGeneId(rs.getInt("entrez_id")) + .associatedGeneSymbol(rs.getString("human_gene_symbol")) + .inheritanceModeCode(rs.getString("inheritance_code")) + .diseaseTypeCode(rs.getString("disease_type")) + .phenotypeIds(phenotypes) + .build(); + listBuilder.add(disease); + } + return listBuilder.build(); + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DiseaseDao.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DiseaseDao.java new file mode 100644 index 000000000..5b54d3695 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DiseaseDao.java @@ -0,0 +1,42 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.dao; + +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; + +import java.util.List; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public interface DiseaseDao { + + Set getHpoIdsForDiseaseId(String diseaseId); + + List getDiseaseDataAssociatedWithGeneId(int geneId); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/Disease.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/Disease.java new file mode 100644 index 000000000..1cbabfabe --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/Disease.java @@ -0,0 +1,218 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import java.util.ArrayList; +import java.util.List; +import java.util.Objects; + +/** + * @author Jules Jacobsen + */ +public final class Disease { + + public enum DiseaseType { + + DISEASE("disease", "D"), + NON_DISEASE("non-disease", "N"), + SUSCEPTIBILITY("susceptibility", "S"), + UNCONFIRMED("unconfirmed", "?"), + CNV("CNV", "C"); + + private final String value; + private final String columnValue; + + DiseaseType(String value, String columnValue) { + this.value = value; + this.columnValue = columnValue; + } + + public static DiseaseType code(String key) { + for (DiseaseType diseaseType : DiseaseType.values()) { + if (diseaseType.columnValue.equals(key)) { + return diseaseType; + } + } + return UNCONFIRMED; + } + + public String getValue() { + return value; + } + + public String getCode() { + return columnValue; + } + } + + private final String diseaseId; + private final String diseaseName; + + private final int associatedGeneId; + private final String associateGeneSymbol; + + private final DiseaseType diseaseType; + private final InheritanceMode inheritanceMode; + + private final List phenotypeIds; + + private Disease(DiseaseDataBuilder builder) { + this.diseaseId = builder.diseaseId; + this.diseaseName = builder.diseaseName; + this.associatedGeneId = builder.entrezGeneId; + this.associateGeneSymbol = builder.humanGeneSymbol; + this.diseaseType = builder.diseaseType; + this.inheritanceMode = builder.inheritanceMode; + this.phenotypeIds = builder.phenotypeIds; + } + + public String getDiseaseId() { + return diseaseId; + } + + public String getDiseaseName() { + return diseaseName; + } + + public int getAssociatedGeneId() { + return associatedGeneId; + } + + public String getAssociatedGeneSymbol() { + return associateGeneSymbol; + } + + public DiseaseType getDiseaseType() { + return diseaseType; + } + + public InheritanceMode getInheritanceMode() { + return inheritanceMode; + } + + public List getPhenotypeIds() { + return phenotypeIds; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof Disease)) return false; + Disease that = (Disease) o; + return associatedGeneId == that.associatedGeneId && + Objects.equals(diseaseId, that.diseaseId) && + Objects.equals(diseaseName, that.diseaseName) && + Objects.equals(associateGeneSymbol, that.associateGeneSymbol) && + diseaseType == that.diseaseType && + inheritanceMode == that.inheritanceMode && + Objects.equals(phenotypeIds, that.phenotypeIds); + } + + @Override + public int hashCode() { + return Objects.hash(diseaseId, diseaseName, associatedGeneId, associateGeneSymbol, diseaseType, inheritanceMode, phenotypeIds); + } + + + @Override + public String toString() { + return "Disease{" + + "diseaseId='" + diseaseId + '\'' + + ", diseaseName='" + diseaseName + '\'' + + ", associatedGeneId=" + associatedGeneId + + ", associateGeneSymbol='" + associateGeneSymbol + '\'' + + ", diseaseType=" + diseaseType + + ", inheritanceMode=" + inheritanceMode + + ", phenotypeIds=" + phenotypeIds + + '}'; + } + + public static DiseaseDataBuilder builder() { + return new DiseaseDataBuilder(); + } + + public static final class DiseaseDataBuilder { + + private String diseaseId = ""; + private String diseaseName = ""; + + private int entrezGeneId = 0; + private String humanGeneSymbol = ""; + + private DiseaseType diseaseType = DiseaseType.UNCONFIRMED; + private InheritanceMode inheritanceMode = InheritanceMode.UNKNOWN; + + private List phenotypeIds = new ArrayList<>(); + + private DiseaseDataBuilder() { + } + + public DiseaseDataBuilder diseaseId(String diseaseId) { + this.diseaseId = diseaseId; + return this; + } + + public DiseaseDataBuilder diseaseName(String diseaseName) { + this.diseaseName = diseaseName; + return this; + } + + public DiseaseDataBuilder associatedGeneId(int entrezGeneId) { + this.entrezGeneId = entrezGeneId; + return this; + } + + public DiseaseDataBuilder associatedGeneSymbol(String humanGeneSymbol) { + this.humanGeneSymbol = humanGeneSymbol; + return this; + } + + public DiseaseDataBuilder diseaseType(DiseaseType diseaseType) { + this.diseaseType = diseaseType; + return this; + } + + public DiseaseDataBuilder diseaseTypeCode(String diseaseCode) { + this.diseaseType = DiseaseType.code(diseaseCode); + return this; + } + + public DiseaseDataBuilder inheritanceMode(InheritanceMode inheritanceMode) { + this.inheritanceMode = inheritanceMode; + return this; + } + + public DiseaseDataBuilder inheritanceModeCode(String inheritanceCode) { + this.inheritanceMode = InheritanceMode.valueOfInheritanceCode(inheritanceCode); + return this; + } + + public DiseaseDataBuilder phenotypeIds(List phenotypeIds) { + this.phenotypeIds = phenotypeIds; + return this; + } + + public Disease build() { + return new Disease(this); + } + + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneDiseaseModel.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneDiseaseModel.java new file mode 100644 index 000000000..1bd17a0f1 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneDiseaseModel.java @@ -0,0 +1,127 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.monarchinitiative.exomiser.core.phenotype.Organism; + +import java.util.List; +import java.util.Objects; + +/** + * + * @author Jules Jacobsen + */ +public class GeneDiseaseModel implements GeneModel { + + private final String modelId; + private final Organism organism; + + private final int entrezGeneId; + private final String humanGeneSymbol; + + private final String diseaseId; + private final String diseaseTerm; + + private final List phenotypeIds; + + public GeneDiseaseModel(String modelId, Organism organism, int entrezGeneId, String humanGeneSymbol, String diseaseId, String diseaseTerm, List phenotypeIds) { + this.modelId = modelId; + this.organism = organism; + + this.entrezGeneId = entrezGeneId; + this.humanGeneSymbol = humanGeneSymbol; + + this.diseaseId = diseaseId; + this.diseaseTerm = diseaseTerm; + + this.phenotypeIds = phenotypeIds; + } + + public String getDiseaseId() { + return diseaseId; + } + + public String getDiseaseTerm() { + return diseaseTerm; + } + + @Override + public Organism getOrganism() { + return organism; + } + + @Override + public Integer getEntrezGeneId() { + return entrezGeneId; + } + + @Override + public String getHumanGeneSymbol() { + return humanGeneSymbol; + } + + @Override + public String getId() { + return modelId; + } + + @Override + public List getPhenotypeIds() { + return phenotypeIds; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof GeneDiseaseModel)) return false; + GeneDiseaseModel that = (GeneDiseaseModel) o; + return entrezGeneId == that.entrezGeneId && + Objects.equals(modelId, that.modelId) && + organism == that.organism && + Objects.equals(humanGeneSymbol, that.humanGeneSymbol) && + Objects.equals(diseaseId, that.diseaseId) && + Objects.equals(diseaseTerm, that.diseaseTerm) && + Objects.equals(phenotypeIds, that.phenotypeIds); + } + + @Override + public int hashCode() { + return Objects.hash(modelId, organism, entrezGeneId, humanGeneSymbol, diseaseId, diseaseTerm, phenotypeIds); + } + + @Override + public String toString() { + return "GeneDiseaseModel{" + + "modelId='" + modelId + '\'' + + ", organism=" + organism + + ", entrezGeneId=" + entrezGeneId + + ", humanGeneSymbol='" + humanGeneSymbol + '\'' + + ", diseaseId='" + diseaseId + '\'' + + ", diseaseTerm='" + diseaseTerm + '\'' + + ", phenotypeIds=" + phenotypeIds + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneMatch.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneMatch.java new file mode 100644 index 000000000..f77d1e74d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneMatch.java @@ -0,0 +1,128 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import com.google.common.collect.ImmutableList; +import com.google.common.collect.Lists; + +import java.util.Collections; +import java.util.List; +import java.util.Objects; + +/** + * @author Jules Jacobsen + */ +public class GeneMatch { + + public static final GeneMatch NO_HIT = new GeneMatch(0, 0, 0, Collections.emptyList()); + + private final Integer queryGeneId; + private final Integer matchGeneId; + private final double score; + private final List bestMatchModels; + + private GeneMatch(Integer queryGeneId, Integer matchGeneId, double score, List bestMatchModels) { + this.queryGeneId = queryGeneId; + this.matchGeneId = matchGeneId; + this.score = score; + this.bestMatchModels = ImmutableList.copyOf(bestMatchModels); + } + + public Integer getQueryGeneId() { + return queryGeneId; + } + + public Integer getMatchGeneId() { + return matchGeneId; + } + + public double getScore() { + return score; + } + + public List getBestMatchModels() { + return bestMatchModels; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof GeneMatch)) return false; + GeneMatch geneMatch = (GeneMatch) o; + return Double.compare(geneMatch.score, score) == 0 && + Objects.equals(queryGeneId, geneMatch.queryGeneId) && + Objects.equals(matchGeneId, geneMatch.matchGeneId) && + Objects.equals(bestMatchModels, geneMatch.bestMatchModels); + } + + @Override + public int hashCode() { + return Objects.hash(queryGeneId, matchGeneId, score, bestMatchModels); + } + + @Override + public String toString() { + return "GeneMatch{" + + "queryGeneId=" + queryGeneId + + ", matchGeneId=" + matchGeneId + + ", score=" + score + + ", bestMatchModels=" + bestMatchModels + + '}'; + } + + public static Builder builder() { + return new Builder(); + } + + public static class Builder { + + private Integer queryGeneId = 0; + private Integer matchGeneId = 0; + private double score = 0; + private List bestMatchModels = Lists.newArrayList(); + + + public Builder queryGeneId(Integer queryGeneId) { + this.queryGeneId = queryGeneId; + return this; + } + + public Builder matchGeneId(Integer matchGeneId) { + this.matchGeneId = matchGeneId; + return this; + } + + public Builder score(double score) { + this.score = score; + return this; + } + + public Builder bestMatchModels(List bestMatchModels) { + this.bestMatchModels = bestMatchModels; + return this; + } + + public GeneMatch build() { + return new GeneMatch(queryGeneId, matchGeneId, score, bestMatchModels); + } + + } +} \ No newline at end of file diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModel.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModel.java new file mode 100644 index 000000000..6aa5a5a7d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModel.java @@ -0,0 +1,53 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.monarchinitiative.exomiser.core.phenotype.Model; +import org.monarchinitiative.exomiser.core.phenotype.Organism; + +/** + * Interface for encapsulating data involved in a disease/animal model to human + * gene association. This interface defines the common features of a model - + * gene and disease models are somewhat different otherwise. + * + * For example the disease Pfeiffer syndrome (OMIM:101600) has a set of defined + * phenotypes encoded using HPO terms is associated with two causative genes, + * FGFR1 (Entrez:2260) and FGFR2 (Entrez:2263). + * + * There are also mouse models where the mouse homologue of FGFR1 and FGFR2 have + * been knocked-out and they too have a set of defined phenotypes. However the + * mouse phenotypes are encoded using the MPO. + * + * Due to the phenotypic similarities of the mouse knockout and/or the human + * disease it is possible to infer a likely causative gene for a given set of + * input phenotypes. + * + * @author Jules Jacobsen + */ +public interface GeneModel extends Model { + + Organism getOrganism(); + + Integer getEntrezGeneId(); + + String getHumanGeneSymbol(); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModelPhenotypeMatch.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModelPhenotypeMatch.java new file mode 100644 index 000000000..dfc167186 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModelPhenotypeMatch.java @@ -0,0 +1,112 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import com.google.common.collect.ImmutableList; +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; + +import java.util.List; +import java.util.Objects; + +/** + * @author Jules Jacobsen + */ +public class GeneModelPhenotypeMatch implements GeneModel { + + private final double score; + private final GeneModel model; + private final List bestModelPhenotypeMatches; + + public GeneModelPhenotypeMatch(double score, GeneModel model, List bestModelPhenotypeMatches) { + this.score = score; + this.model = model; + this.bestModelPhenotypeMatches = ImmutableList.copyOf(bestModelPhenotypeMatches); + } + + public double getScore() { + return score; + } + + public GeneModel getModel() { + return model; + } + + public List getBestModelPhenotypeMatches() { + return bestModelPhenotypeMatches; + } + + @JsonIgnore + @Override + public String getId() { + return model.getId(); + } + + @JsonIgnore + @Override + public List getPhenotypeIds() { + return model.getPhenotypeIds(); + } + + @JsonIgnore + @Override + public Organism getOrganism() { + return model.getOrganism(); + } + + @JsonIgnore + @Override + public Integer getEntrezGeneId() { + return model.getEntrezGeneId(); + } + + @JsonIgnore + @Override + public String getHumanGeneSymbol() { + return model.getHumanGeneSymbol(); + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof GeneModelPhenotypeMatch)) return false; + GeneModelPhenotypeMatch that = (GeneModelPhenotypeMatch) o; + return Double.compare(that.score, score) == 0 && + Objects.equals(model, that.model) && + Objects.equals(bestModelPhenotypeMatches, that.bestModelPhenotypeMatches); + } + + @Override + public int hashCode() { + return Objects.hash(model, bestModelPhenotypeMatches, score); + } + + + @Override + public String toString() { + return "GeneModelPhenotypeMatch{" + + "score=" + score + + ", model=" + model + + ", bestModelPhenotypeMatches=" + bestModelPhenotypeMatches + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneOrthologModel.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneOrthologModel.java new file mode 100644 index 000000000..b629e739a --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneOrthologModel.java @@ -0,0 +1,141 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.monarchinitiative.exomiser.core.phenotype.Organism; + +import java.util.List; +import java.util.Objects; + +/** + * Bean for encapsulating data involved in an animal model to human gene + * association. + * + * For example the disease Pfeiffer syndrome (OMIM:101600) has a set of defined + * phenotypes encoded using HPO terms is associated with two causative genes, + * FGFR1 (Entrez:2260) and FGFR2 (Entrez:2263). + * + * There are also mouse models where the mouse homologue of FGFR1 and FGFR2 have + * been knocked-out and they too have a set of defined phenotypes. However the + * mouse phenotypes are encoded using the MPO. + * + * Due to the phenotypic similarities of the mouse knockout and/or the human + * disease it is possible to infer a likely causative gene for a given set of + * input phenotypes. + * + * @author Jules Jacobsen + */ +public class GeneOrthologModel implements GeneModel { + + private final String modelId; + private final Organism organism; + + private final int entrezGeneId; + private final String humanGeneSymbol; + + private final String modelGeneId; + private final String modelGeneSymbol; + + private final List phenotypeIds; + + public GeneOrthologModel(String modelId, Organism organism, int entrezGeneId, String humanGeneSymbol, String modelGeneId, String modelGeneSymbol, List phenotypeIds) { + this.modelId = modelId; + this.organism = organism; + + this.entrezGeneId = entrezGeneId; + this.humanGeneSymbol = humanGeneSymbol; + + this.modelGeneId = modelGeneId; + this.modelGeneSymbol = modelGeneSymbol; + + this.phenotypeIds = phenotypeIds; + } + + public String getModelGeneId() { + return modelGeneId; + } + + public String getModelGeneSymbol() { + return modelGeneSymbol; + } + + @Override + public Organism getOrganism() { + return organism; + } + + @Override + public Integer getEntrezGeneId() { + return entrezGeneId; + } + + @Override + public String getHumanGeneSymbol() { + return humanGeneSymbol; + } + + @Override + public String getId() { + return modelId; + } + + @Override + public List getPhenotypeIds() { + return phenotypeIds; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof GeneOrthologModel)) return false; + GeneOrthologModel geneOrthologModel = (GeneOrthologModel) o; + return entrezGeneId == geneOrthologModel.entrezGeneId && + Objects.equals(modelId, geneOrthologModel.modelId) && + organism == geneOrthologModel.organism && + Objects.equals(humanGeneSymbol, geneOrthologModel.humanGeneSymbol) && + Objects.equals(modelGeneId, geneOrthologModel.modelGeneId) && + Objects.equals(modelGeneSymbol, geneOrthologModel.modelGeneSymbol) && + Objects.equals(phenotypeIds, geneOrthologModel.phenotypeIds); + } + + @Override + public int hashCode() { + return Objects.hash(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, phenotypeIds); + } + + @Override + public String toString() { + return "GeneOrthologModel{" + + "modelId='" + modelId + '\'' + + ", organism=" + organism + + ", entrezGeneId=" + entrezGeneId + + ", humanGeneSymbol='" + humanGeneSymbol + '\'' + + ", modelGeneId='" + modelGeneId + '\'' + + ", modelGeneSymbol='" + modelGeneSymbol + '\'' + + ", phenotypeIds=" + phenotypeIds + + '}'; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/InheritanceMode.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/InheritanceMode.java new file mode 100644 index 000000000..a0aa70112 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/model/InheritanceMode.java @@ -0,0 +1,122 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +/** + * Enum representing the different modes on inheritance for a disease. + * @author Jules Jacobsen + */ +public enum InheritanceMode { + //n.b. This is tightly coupled to parsing the input files and inserting disease data into the database, so don't change the inheritanceCodes + UNKNOWN("unknown", "U"), + + AUTOSOMAL_RECESSIVE("autosomal recessive", "R"), + AUTOSOMAL_DOMINANT("autosomal dominant", "D"), + AUTOSOMAL_DOMINANT_AND_RECESSIVE("autosomal dominant/recessive", "B"), + + X_LINKED("X-linked", "X"), + X_RECESSIVE("X-linked recessive", "XR"), + X_DOMINANT("X-linked dominant", "XD"), + + Y_LINKED("Y-linked", "Y"), + + SOMATIC("somatic", "S"), + MITOCHONDRIAL("mitochondrial", "M"), + POLYGENIC("polygenic", "P"); + + private final String hpoTerm; + //short form letter code for the inheritance mode + private final String inheritanceCode; + + InheritanceMode(String hpoTerm, String inheritanceCode) { + this.hpoTerm = hpoTerm; + this.inheritanceCode = inheritanceCode; + } + + public String getTerm() { + return hpoTerm; + } + + public String getInheritanceCode() { + return inheritanceCode; + } + + /** + * Returns the InheritanceMode for a given inheritanceCode. Will return UNKNOWN + * as a default. + * @param inheritanceCode + * @return + */ + public static InheritanceMode valueOfInheritanceCode(String inheritanceCode) { + for (InheritanceMode inheritanceMode : InheritanceMode.values()) { + if (inheritanceMode.inheritanceCode.equals(inheritanceCode)) { + return inheritanceMode; + } + } + return UNKNOWN; + } + + public boolean isCompatibleWithDominant() { + switch(this) { + case AUTOSOMAL_DOMINANT: + case AUTOSOMAL_DOMINANT_AND_RECESSIVE: + return true; + default: + return false; + } + } + + public boolean isCompatibleWithRecessive() { + switch(this) { + case AUTOSOMAL_RECESSIVE: + case AUTOSOMAL_DOMINANT_AND_RECESSIVE: + return true; + default: + return false; + } + } + + public boolean isXlinked() { + switch(this) { + case X_LINKED: + case X_DOMINANT: + case X_RECESSIVE: + return true; + default: + return false; + } + } + + + @Override + public String toString() { + return "InheritanceMode{" + + "hpoTerm='" + hpoTerm + '\'' + + ", inheritanceCode='" + inheritanceCode + '\'' + + "} " + super.toString(); + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/ModelService.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/ModelService.java new file mode 100644 index 000000000..ede697b17 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/ModelService.java @@ -0,0 +1,45 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.service; + +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; + +import java.util.List; + +/** + * Interface for Services retrieving model data. + * + * @author Jules Jacobsen + */ +public interface ModelService { + + List getHumanGeneDiseaseModels(); + + List getMouseGeneOrthologModels(); + + List getFishGeneOrthologModels(); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/ModelServiceImpl.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/ModelServiceImpl.java new file mode 100644 index 000000000..29117dda0 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/ModelServiceImpl.java @@ -0,0 +1,153 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.service; + +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneDiseaseModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Service; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; + +/** + * + * @author Jules Jacobsen + */ +@Service +public class ModelServiceImpl implements ModelService { + + private static final Logger logger = LoggerFactory.getLogger(ModelService.class); + + @Autowired + private DataSource dataSource; + + @Override + public List getHumanGeneDiseaseModels() { + // We only connect to human2mouse_orthologs to get the human_gene_symbol but if there is no orthology mapping we get 0 results and no disease hit at all - this is daft! + // Tried to replace with the below - should be more successful + String modelQuery = "SELECT distinct 'HUMAN' as organism, gene_id as entrez_id, symbol as human_gene_symbol, d.disease_id as disease_id, d.diseasename as disease_term, hp_id as pheno_ids FROM entrez2sym e, disease_hp M, disease d WHERE e.entrezid=d.gene_id and M.disease_id=d.disease_id"; + //String modelQuery = "SELECT 'HUMAN' as organism, gene_id as entrez_id, human_gene_symbol, d.disease_id as disease_id, d.diseasename as disease_term, hp_id as pheno_ids FROM human2mouse_orthologs hm, disease_hp M, disease d WHERE hm.entrez_id=d.gene_id AND M.disease_id=d.disease_id;"; + return runGeneDiseaseModelQuery(modelQuery); + } + + @Override + public List getMouseGeneOrthologModels() { + String modelQuery = "SELECT 'MOUSE' as organism, entrez_id, human_gene_symbol, mouse_model_id as model_id, M.mgi_gene_id as model_gene_id, M.mgi_gene_symbol as model_gene_symbol, mp_id as pheno_ids FROM mgi_mp M, human2mouse_orthologs H WHERE M.mgi_gene_id=H.mgi_gene_id and human_gene_symbol != 'null'"; + return runGeneOrthologModelQuery(modelQuery); + } + + @Override + public List getFishGeneOrthologModels() { + String modelQuery = "SELECT 'FISH' as organism, entrez_id, human_gene_symbol, zfin_model_id as model_id, M.zfin_gene_id as model_gene_id, M.zfin_gene_symbol as model_gene_symbol, zp_id as pheno_ids FROM zfin_zp M, human2fish_orthologs H WHERE M.zfin_gene_id=H.zfin_gene_id and human_gene_symbol != 'null'"; + return runGeneOrthologModelQuery(modelQuery); + } + + private List runGeneDiseaseModelQuery(String modelQuery) { + List models = new ArrayList<>(); + try (Connection connection = dataSource.getConnection(); + PreparedStatement findAnnotationStatement = connection.prepareStatement(modelQuery); + ResultSet rs = findAnnotationStatement.executeQuery()) { + //each row is an animal model or disease, its phenotypes and the known causitive gene of these phenotypes. e.g. + //ORGANISM ENTREZ_ID HUMAN_GENE_SYMBOL DISEASE_ID DISEASE_TERM pheno_ids + //HUMAN 2263 FGFR2 OMIM:101600 Apert syndrome HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304 + //HUMAN 2260 FGFR1 OMIM:101600 Another syn... HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304 + while (rs.next()) { + Organism organism = Organism.HUMAN; + int entrezId = rs.getInt("entrez_id"); + String humanGeneSymbol = rs.getString("human_gene_symbol"); + + String diseaseId = rs.getString("disease_id"); + String diseaseTerm = rs.getString("disease_term"); + + String modelId = diseaseId + "_" + entrezId; + + String phenotypeIdString = rs.getString("pheno_ids"); + String[] mpInitial = phenotypeIdString.split(","); + List phenotypeIds = Arrays.asList(mpInitial); + + GeneDiseaseModel model = new GeneDiseaseModel(modelId, organism, entrezId, humanGeneSymbol, diseaseId, diseaseTerm, phenotypeIds); + models.add(model); + } + } catch (SQLException e) { + logger.error("Problem setting up model query: {}", modelQuery, e); + } + return models; + } + + private List runGeneOrthologModelQuery(String modelQuery) { + List models = new ArrayList<>(); + try (Connection connection = dataSource.getConnection(); + PreparedStatement findAnnotationStatement = connection.prepareStatement(modelQuery); + ResultSet rs = findAnnotationStatement.executeQuery()) { + //each row is an animal model or disease, its phenotypes and the known causitive gene of these phenotypes. e.g. + //ORGANISM MODEL_ID ENTREZ_ID HUMAN_GENE_SYMBOL MODEL_GENE_ID MODEL_GENE_SYMBOL pheno_ids + //MOUSE 115 2263 FGFR2 MGI:95523 Fgfr2 MP:0000031,MP:0000035,MP:0000039,MP:0000081,MP:0000111,MP:0000118,MP:0000440,MP:0000470,MP:0000492,MP:0000551,MP:0000557,MP:0000613,MP:0000629,MP:0000633,MP:0001176,MP:0001181,MP:0001199,MP:0001201,MP:0001218,MP:0001231,MP:0001244,MP:0001265,MP:0001341,MP:0002095,MP:0002428,MP:0002691,MP:0003051,MP:0003124,MP:0003308,MP:0003315,MP:0003703,MP:0003817,MP:0004135,MP:0004310,MP:0004343,MP:0004346,MP:0004507,MP:0004509,MP:0004619,MP:0004691,MP:0005298,MP:0005354,MP:0006011,MP:0006279,MP:0006287,MP:0006288,MP:0008320,MP:0009479,MP:0009509,MP:0009510,MP:0009522,MP:0009524,MP:0011026,MP:0011089,MP:0011158 + //MOUSE 116 2263 FGFR2 MGI:95523 Fgfr2 MP:0009522,MP:0009525 + while (rs.next()) { + Organism organism = Organism.valueOf(rs.getString("organism")); + String modelId = rs.getString("model_id"); + + int entrezId = rs.getInt("entrez_id"); + String humanGeneSymbol = rs.getString("human_gene_symbol"); + + String modelGeneId = rs.getString("model_gene_id"); + String modelGeneSymbol = rs.getString("model_gene_symbol"); + + modelId = modelGeneId + "_" + modelId; + + String phenotypeIdString = toEmptyIfNull(rs.getString("pheno_ids")); + + String[] mpInitial = phenotypeIdString.split(","); + List phenotypeIds = Arrays.asList(mpInitial); + + GeneOrthologModel model = new GeneOrthologModel(modelId, organism, entrezId, humanGeneSymbol, modelGeneId, modelGeneSymbol, phenotypeIds); + models.add(model); + } + } catch (SQLException e) { + logger.error("Problem setting up model query: {}", modelQuery, e); + } + return models; + } + + private String toEmptyIfNull(String result) { + if (result == null) { + return ""; + } + return result; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/PriorityService.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/PriorityService.java new file mode 100644 index 000000000..01cd3528c --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/service/PriorityService.java @@ -0,0 +1,107 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.service; + +import com.google.common.collect.ImmutableList; +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatchService; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatcher; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.prioritisers.dao.DiseaseDao; +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.cache.annotation.Cacheable; +import org.springframework.stereotype.Service; + +import java.util.Collections; +import java.util.List; + +/** + * Service class which offers a single interface to other services required by + * prioritisers. This aims to simplify getting data from different Services. + * + * @author Jules Jacobsen + */ +@Service +public class PriorityService { + + private static final Logger logger = LoggerFactory.getLogger(PriorityService.class); + + private final ModelService modelService; + private final PhenotypeMatchService phenotypeMatchService; + private final DiseaseDao diseaseDao; + + @Autowired + public PriorityService(ModelService modelService, PhenotypeMatchService phenotypeMatchService, DiseaseDao diseaseDao) { + this.modelService = modelService; + this.phenotypeMatchService = phenotypeMatchService; + this.diseaseDao = diseaseDao; + } + + public List getHpoIdsForDiseaseId(String diseaseId) { + return ImmutableList.copyOf(diseaseDao.getHpoIdsForDiseaseId(diseaseId)); + } + + public List makePhenotypeTermsFromHpoIds(List hpoIds) { + return phenotypeMatchService.makePhenotypeTermsFromHpoIds(hpoIds); + } + + public PhenotypeMatcher getPhenotypeMatcherForOrganism(List queryHpoPhenotypes, Organism organism) { + switch (organism) { + case HUMAN: + return phenotypeMatchService.getHumanPhenotypeMatcherForTerms(queryHpoPhenotypes); + case MOUSE: + return phenotypeMatchService.getMousePhenotypeMatcherForTerms(queryHpoPhenotypes); + case FISH: + return phenotypeMatchService.getFishPhenotypeMatcherForTerms(queryHpoPhenotypes); + default: + throw new IllegalArgumentException("Organism" + organism + "not valid"); + } + } + + @Cacheable(value = "models", key = "#species", cacheResolver = "modelCacheResolver") + public List getModelsForOrganism(Organism species) { + logger.info("Fetching disease/gene model phenotype annotations and HUMAN-{} gene orthologs", species); + switch (species) { + case HUMAN: + return modelService.getHumanGeneDiseaseModels(); + case MOUSE: + return modelService.getMouseGeneOrthologModels(); + case FISH: + return modelService.getFishGeneOrthologModels(); + default: + return Collections.emptyList(); + } + } + + public List getDiseaseDataAssociatedWithGeneId(int geneId) { + return diseaseDao.getDiseaseDataAssociatedWithGeneId(geneId); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrix.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrix.java new file mode 100644 index 000000000..91ba1fe7d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrix.java @@ -0,0 +1,86 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.util; + +import org.jblas.FloatMatrix; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Collections; +import java.util.Map; +import java.util.Objects; + +/** + * Contains the random walk relationships and the entrez-id to index relations. + * + * @author Sebastian Köhler + * @author Jules Jacobsen + */ +public class DataMatrix { + + private static final Logger logger = LoggerFactory.getLogger(DataMatrix.class); + + public static final DataMatrix EMPTY = new DataMatrix(FloatMatrix.EMPTY, Collections.emptyMap()); + + private final FloatMatrix matrix; + private final Map entrezIdToRowIndex; + + public DataMatrix(FloatMatrix matrix, Map entrezIdToRowIndex) { + this.matrix = matrix; + this.entrezIdToRowIndex = entrezIdToRowIndex; + } + + public Map getEntrezIdToRowIndex() { + return entrezIdToRowIndex; + } + + public FloatMatrix getMatrix() { + return matrix; + } + + public boolean containsGene(Integer entrezGeneId) { + return entrezIdToRowIndex.containsKey(entrezGeneId); + } + + public Integer getRowIndexForGene(int entrezGeneId) { + return entrezIdToRowIndex.get(entrezGeneId); + } + + public FloatMatrix getColumnMatrixForGene(int entrezGeneId) { + //the PPI float matrix is symmetrical so this will work here. + Integer rowIndex = entrezIdToRowIndex.get(entrezGeneId); + return matrix.getColumn(rowIndex); + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (!(o instanceof DataMatrix)) return false; + DataMatrix that = (DataMatrix) o; + return Objects.equals(matrix, that.matrix) && + Objects.equals(entrezIdToRowIndex, that.entrezIdToRowIndex); + } + + @Override + public int hashCode() { + return Objects.hash(matrix, entrezIdToRowIndex); + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixIO.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixIO.java new file mode 100644 index 000000000..1d0f39ff9 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixIO.java @@ -0,0 +1,238 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.util; + +import org.jblas.FloatMatrix; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.*; +import java.util.HashMap; +import java.util.Map; +import java.util.zip.GZIPInputStream; + +/** + * @author Jules Jacobsen + * @author Sebastian Köhler + */ +public class DataMatrixIO { + + private static final Logger logger = LoggerFactory.getLogger(DataMatrixIO.class); + + private static final String TAB_DELIMITER = "\t"; + + /* + * This shouldn't be instantiated. + */ + private DataMatrixIO() {} + + public static DataMatrix loadDataMatrix(String matrixFileZip, String entrezId2indexFileZip, boolean shouldUseExponent) { + Map index = createIndex(entrezId2indexFileZip); + FloatMatrix floatMatrix = createMatrixfromFile(index.size(), matrixFileZip, shouldUseExponent); + return new DataMatrix(floatMatrix, index); + } + + private static Map createIndex(String object2idxFileZip) { + Map index = new HashMap(); + File indexFile = new File(object2idxFileZip); + try (BufferedReader indexReader = gzippedFileBufferedReader(indexFile)) { + String line; + while ((line = indexReader.readLine()) != null) { + addLineDataToIndex(line, index); + } + } catch (IOException e) { + throw new DataMatrixIoException(e); + } + return index; + } + + private static void addLineDataToIndex(String line, Map index) { + String[] split = line.split(TAB_DELIMITER); + int objectId = Integer.parseInt(split[0]); + int idx = Integer.parseInt(split[1]); + index.put(objectId, idx); + } + + private static FloatMatrix createMatrixfromFile(int matrixSize, String matrixFileZip, boolean shouldUseExponent) { + FloatMatrix floatMatrix = new FloatMatrix(matrixSize, matrixSize); + + File matrixFile = new File(matrixFileZip); + try (BufferedReader in = gzippedFileBufferedReader(matrixFile)) { + int i = 0; + String line; + while ((line = in.readLine()) != null) { + //just a nicety to stop you wondering if anything is going on - this stage takes a minute or two + logLineNumberIfMultipleOf(i, 500); + addLineDataToMatrixRow(floatMatrix, line, i, shouldUseExponent); + i++; + } + } catch (IOException e) { + throw new DataMatrixIoException(e); + } + return floatMatrix; + } + + private static void logLineNumberIfMultipleOf(int lineNumber, int multiple) { + if (lineNumber % multiple == 0) { + logger.info("reading line {}", lineNumber); + } + } + + private static void addLineDataToMatrixRow(FloatMatrix floatMatrix, String line, int i, boolean shouldUseExponent) { + String[] row = line.split(TAB_DELIMITER); + int matrixSize = floatMatrix.rows; + for (int j = 0; j < matrixSize; j++) { + float entry = Float.parseFloat(row[j]); + if (shouldUseExponent) { + entry = (float) Math.exp(entry); + } + floatMatrix.put(i, j, entry); + } + } + + private static BufferedReader gzippedFileBufferedReader(File file) throws IOException { + // if the gz-file exists we try to create a BufferedReader for this file + BufferedReader bufferedReader; + int bufferSizeInBytes = 1024; + if (file.exists()) { + InputStream inputStream = new GZIPInputStream(new FileInputStream(file), bufferSizeInBytes); + bufferedReader = new BufferedReader(new InputStreamReader(inputStream)); + } else { + throw new DataMatrixIoException(new RuntimeException("FATAL: file not found " + file.getName())); + } + return bufferedReader; + } + + /** + * WARNING! This is a legacy method - it is not known whether this was used to generate the files read by the loadDataMatrix method. + * @param dataMatrix + * @param file + * @param doLogarithm + */ + public static void writeMatrix(DataMatrix dataMatrix, String file, boolean doLogarithm) { + FloatMatrix matrix = dataMatrix.getMatrix(); + Map id2index = new HashMap<>(); + for (Map.Entry entry : dataMatrix.getEntrezIdToRowIndex().entrySet()) { + id2index.put(entry.getKey().toString(), entry.getValue()); + } + writeMatrix(matrix, file, id2index, doLogarithm); + } + + /** + * WARNING! This is a legacy method - it is not known whether this was used to generate the files read by the loadDataMatrix method. + * @param matrix + * @param file + * @param id2index + * @param doLogarithm + */ + public static void writeMatrix(FloatMatrix matrix, String file, Map id2index, boolean doLogarithm) { + try ( + BufferedWriter outMatrix = new BufferedWriter(new FileWriter(file)); + BufferedWriter outIndexMap = new BufferedWriter(new FileWriter(file + "_id2index"))) { + + for (Map.Entry entry : id2index.entrySet()) { + String entrezId = entry.getKey(); + outIndexMap.write(new StringBuilder().append(entrezId).append("\t").append(entry.getValue()).append("\n").toString()); + } + + for (int i = 0; i < matrix.rows; i++) { + for (int j = 0; j < matrix.columns; j++) { + if (j > 0) { + outMatrix.write("\t"); + } + if (doLogarithm) { + outMatrix.write(String.format("%.5f", Math.log(matrix.get(i, j)))); + } else { + outMatrix.write(String.format("%.5f", matrix.get(i, j))); + } + } + outMatrix.write("\n"); + } + + } catch (IOException e) { + logger.info("Unable to write DataMatrix to file {}", file); + } + } + + /** + * WARNING! This is a legacy method - it is not known whether this was used to generate the files read by the loadDataMatrix method. + * @param dataMatrix + * @param file + * @param doLogarithm + */ + public static void writeMatrixInclHeaderAndRowIDs(DataMatrix dataMatrix, String file, boolean doLogarithm) { + FloatMatrix matrix = dataMatrix.getMatrix(); + Map id2index = new HashMap<>(); + for (Map.Entry entry : dataMatrix.getEntrezIdToRowIndex().entrySet()) { + id2index.put(entry.getKey().toString(), entry.getValue()); + } + writeMatrixInclHeaderAndRowIDs(matrix, file, id2index, doLogarithm); + } + + /** + * WARNING! This is a legacy method - it is not known whether this was used to generate the files read by the loadDataMatrix method. + * @param matrix + * @param file + * @param id2index + * @param doLogarithm + */ + public static void writeMatrixInclHeaderAndRowIDs(FloatMatrix matrix, String file, Map id2index, boolean doLogarithm) { + try (BufferedWriter outMatrix = new BufferedWriter(new FileWriter(file))) { + Map index2id = new HashMap<>(); + for (Map.Entry entry : id2index.entrySet()) { + index2id.put(entry.getValue(), entry.getKey()); + } + outMatrix.write("Key"); + for (int i = 0; i < id2index.size(); i++) { + outMatrix.write(";" + index2id.get(i)); + } + outMatrix.write("\n"); + + for (int i = 0; i < matrix.rows; i++) { + outMatrix.write(index2id.get(i)); + for (int j = 0; j < matrix.columns; j++) { + outMatrix.write(";"); + if (doLogarithm) { + outMatrix.write(String.format("%.5f", Math.log(matrix.get(i, j)))); + } else { + outMatrix.write(String.format("%.10f", matrix.get(i, j))); + } + } + + outMatrix.write("\n"); + } + } catch (IOException e) { + logger.info("Unable to write DataMatrix with headers to file {}", file); + } + } + + public static class DataMatrixIoException extends RuntimeException { + + public DataMatrixIoException(Throwable cause) { + super(cause); + } + + public DataMatrixIoException(String message, Throwable cause) { + super(message, cause); + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/HiPhiveProteinInteractionScorer.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/HiPhiveProteinInteractionScorer.java new file mode 100644 index 000000000..59e2592b4 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/HiPhiveProteinInteractionScorer.java @@ -0,0 +1,187 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.util; + +import com.google.common.collect.ArrayListMultimap; +import com.google.common.collect.ListMultimap; +import com.google.common.collect.Lists; +import org.jblas.FloatMatrix; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneMatch; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Collections; +import java.util.LinkedHashMap; +import java.util.List; +import java.util.Map; + +/** + * @author Jules Jacobsen + */ +public class HiPhiveProteinInteractionScorer { + + private static final Logger logger = LoggerFactory.getLogger(HiPhiveProteinInteractionScorer.class); + + public static final HiPhiveProteinInteractionScorer EMPTY = new HiPhiveProteinInteractionScorer(); + + private final DataMatrix dataMatrix; + + private final ListMultimap bestGeneModels; + private final double highQualityPhenoScoreCutOff; + + private final Map highQualityPhenoMatchedGeneScores; + private final List highQualityPhenoMatchedGeneIds; + private final FloatMatrix weightedHighQualityMatrix; + + private HiPhiveProteinInteractionScorer() { + this.dataMatrix = DataMatrix.EMPTY; + + //This isn't quite right... these: + this.bestGeneModels = ArrayListMultimap.create(); + this.highQualityPhenoScoreCutOff = 0.0; + //should be used to produce these wrapped in some matcher or some-such: + highQualityPhenoMatchedGeneScores = Collections.emptyMap(); + highQualityPhenoMatchedGeneIds = Collections.emptyList(); + weightedHighQualityMatrix = FloatMatrix.EMPTY; + } + + public HiPhiveProteinInteractionScorer(DataMatrix dataMatrix, ListMultimap bestGeneModels, double highQualityPhenoScoreCutOff) { + this.dataMatrix = dataMatrix; + this.bestGeneModels = bestGeneModels; + this.highQualityPhenoScoreCutOff = highQualityPhenoScoreCutOff; + + highQualityPhenoMatchedGeneScores = getHighestGeneIdPhenoScores(); + highQualityPhenoMatchedGeneIds = Lists.newArrayList(highQualityPhenoMatchedGeneScores.keySet()); + weightedHighQualityMatrix = makeWeightedProteinInteractionMatrix(); + } + + private Map getHighestGeneIdPhenoScores() { + Map highestGeneIdPhenoScores = new LinkedHashMap<>(); + for (GeneModelPhenotypeMatch geneModelPhenotypeMatch : bestGeneModels.values()) { + Integer entrezId = geneModelPhenotypeMatch.getEntrezGeneId(); + Double score = geneModelPhenotypeMatch.getScore(); + // only build PPI network for high quality hits + if (score > highQualityPhenoScoreCutOff) { + logger.debug("Adding high quality score for {} score={}", geneModelPhenotypeMatch.getHumanGeneSymbol(), geneModelPhenotypeMatch + .getScore()); + if (!highestGeneIdPhenoScores.containsKey(entrezId) || score > highestGeneIdPhenoScores.get(entrezId)) { + highestGeneIdPhenoScores.put(entrezId, score); + } + } + } + logger.info("Using {} high quality phenotypic gene match scores (score > {})", highestGeneIdPhenoScores.size(), highQualityPhenoScoreCutOff); + return Collections.unmodifiableMap(highestGeneIdPhenoScores); + } + + //todo: If this returned a DataMatrix things might be a bit more convenient later on... + private FloatMatrix makeWeightedProteinInteractionMatrix() { + logger.info("Making weighted-score Protein-Protein interaction sub-matrix from high quality phenotypic gene matches..."); + logger.info("Original data matrix ({} rows * {} columns)", dataMatrix.getMatrix() + .getRows(), dataMatrix.getMatrix().getColumns()); + int rows = dataMatrix.getMatrix().getRows(); + int cols = highQualityPhenoMatchedGeneScores.size(); + FloatMatrix highQualityPpiMatrix = FloatMatrix.zeros(rows, cols); + int c = 0; + for (Map.Entry entry : highQualityPhenoMatchedGeneScores.entrySet()) { + Integer seedGeneEntrezId = entry.getKey(); + //TODO: the original DataMatrix is a symmetrical matrix this new one is asymmetrical with the original rows but only high-quality columns. + if (dataMatrix.containsGene(seedGeneEntrezId)) { + FloatMatrix column = dataMatrix.getColumnMatrixForGene(seedGeneEntrezId); + // weight column by phenoScore + //get the best model score for the gene from the highQualityPhenoMatchedGenes + Double score = entry.getValue(); + column = column.mul(score.floatValue()); + highQualityPpiMatrix.putColumn(c, column); + } + c++; + } + logger.info("Made high quality interaction matrix ({} rows * {} columns)", highQualityPpiMatrix.getRows(), highQualityPpiMatrix + .getColumns()); + return highQualityPpiMatrix; + } + + public GeneMatch getClosestPhenoMatchInNetwork(Integer entrezGeneId) { + if (!dataMatrix.containsGene(entrezGeneId) || highQualityPhenoMatchedGeneIds.isEmpty()) { + return GeneMatch.NO_HIT; + } + int rowIndex = dataMatrix.getRowIndexForGene(entrezGeneId); + int columnIndex = getColumnIndexOfMostPhenotypicallySimilarGene(entrezGeneId); + + /* Changed method to return -1 if no hit as otherwise could not distinguish between + no hit or hit to 1st entry in column (entrezGene 50640). When querying with 50640 this + resulted in a self-hit being returned with a PPI score of 0.5+0.7=1.2 and also lots of + low-scoring (0.5) PPI hits to 50640 for other genes with no PPI match + */ + if (columnIndex == -1){ + return GeneMatch.NO_HIT; + } + + // optimal adjustment based on benchmarking to allow walker scores to compete with low phenotype scores + double walkerScore = 0.5 + weightedHighQualityMatrix.get(rowIndex, columnIndex); + + Integer closestGeneId = highQualityPhenoMatchedGeneIds.get(columnIndex); + List models = bestGeneModels.get(closestGeneId); + + return GeneMatch.builder() + .queryGeneId(entrezGeneId) + .matchGeneId(closestGeneId) + .score(walkerScore) + .bestMatchModels(models) + .build(); + } + + /** + * This function retrieves the random walk similarity score for the gene + * + * @param entrezGeneId for which the random walk score is to be retrieved + */ + //TODO: speed this up? This bit is slow. This can be done in a single operation without having to pre-compute the high-quality matrix. + private int getColumnIndexOfMostPhenotypicallySimilarGene(int entrezGeneId) { + int geneIndex = dataMatrix.getRowIndexForGene(entrezGeneId); + int columnIndex = 0; + double bestScore = 0; + int bestHitIndex = -1; + //TODO: here were walking along all the columns of a row from the high quality matches, i.e. traversing a list to find the value and position of the highest value in that list. + //The matrix is (12511 rows * 303 columns) + // The output of this function (assigned to columnIndex) is used to: + // define the walkerScore: + // walkerScore = 0.5 + weightedHighQualityMatrix.get(rowIndex, columnIndex); + // + // Integer closestGeneId = highQualityPhenoMatchedGeneIds.get(columnIndex); + // closestPhysicallyInteractingGeneModels = bestGeneModels.get(closestGeneId); + for (Integer similarGeneEntrezId : highQualityPhenoMatchedGeneIds) { + if (!dataMatrix.containsGene(similarGeneEntrezId) || similarGeneEntrezId == entrezGeneId) { + //avoid self-hits now are testing genes with direct pheno-evidence as well + columnIndex++; + } else { + double cellScore = weightedHighQualityMatrix.get(geneIndex, columnIndex); + if (cellScore > bestScore) { + bestScore = cellScore; + bestHitIndex = columnIndex; + } + columnIndex++; + } + } + return bestHitIndex; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/ScoreDistribution.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/ScoreDistribution.java new file mode 100644 index 000000000..2b378c67a --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/ScoreDistribution.java @@ -0,0 +1,99 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.util; + +import java.util.List; + +/** + * @author Sebastian Köhler + * + */ +public class ScoreDistribution { + + private double[] scores; + private double[] pvalues; + private double numberRandomizations; + private int numberQueryTerms; + private int mimNumber; + + public int getNumberQueryTerms() { + return numberQueryTerms; + } + + public int getMimNumber() { + return mimNumber; + } + + + public void setDistribution(List scoresAL, List pvaluesAL, double numRandomizations){ + + this.scores = new double[scoresAL.size()]; + this.pvalues = new double[pvaluesAL.size()]; + + for (int i = 0 ; i < scoresAL.size(); i++){ + this.scores[i] = scoresAL.get(i); + this.pvalues[i] = pvaluesAL.get(i); + } + + this.numberRandomizations = numRandomizations; + + } + + public double getPvalue(double score, double roundFactor) { + + score = round(score, roundFactor); + + /* maybe this value is too high */ + if ( scores[scores.length-1] < score ) + return (double)1/numberRandomizations; + + /* init with 1 */ + double pvalue = 1; + + for (int i = 0; i < scores.length ; i++){ + + double scoreCand = scores[i]; + if ( score <= scoreCand ){ + pvalue = pvalues[i]; + break; + } + + } + return pvalue; + } + + public static double round( double d , double fact) { + return Math.rint( d * fact ) / fact; + } + + @Override + public String toString() { + StringBuffer buff = new StringBuffer("score dist for: "+mimNumber+":\n"); + for (int i = 0 ; i< scores.length ; i++){ + buff.append(scores[i]+"-"+pvalues[i]+"\n"); + } + return buff.toString(); + } + +} + + + diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/ScoreDistributionContainer.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/ScoreDistributionContainer.java new file mode 100644 index 000000000..defa90054 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/prioritisers/util/ScoreDistributionContainer.java @@ -0,0 +1,175 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.util; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedReader; +import java.io.FileReader; +import java.io.IOException; +import java.util.ArrayList; +import java.util.HashMap; +import java.util.List; +import java.util.Map; + +/** + * @author Sebastian Köhler + * + */ +public class ScoreDistributionContainer { + + private final Logger logger = LoggerFactory.getLogger(ScoreDistributionContainer.class); + + private boolean verboseParsing = false; + private final String distributionsFolder; + private final boolean symmetric; + private final int numQueryTerms; + private static final int MAX_NUMBER_QUERY_TERMS = 20; + private Map> key2scoreDistribution; + + public ScoreDistributionContainer(String distributionsFolder, boolean symmetric, int numQueryTerms) { + this.distributionsFolder = distributionsFolder; + this.symmetric = symmetric; + this.numQueryTerms = limitNumQueryTerms(numQueryTerms); + this.key2scoreDistribution = new HashMap<>(); + parseDistributions(this.numQueryTerms); + } + + public void useVerboseParsing() { + this.verboseParsing = true; + } + + private int limitNumQueryTerms(int numQueryTerms) { + //numQueryTerms is used as a look-up to a file with a filename prefixed with a number from 1-20 + //the constant MAX_NUMBER_QUERY_TERMS is used to make sure the file will be found + return Math.min(numQueryTerms, MAX_NUMBER_QUERY_TERMS); + } + + private static String getKey(boolean symmetric, int numberQueryTerms) { + return symmetric ? Integer.toString(numberQueryTerms) + "_symmetric" : Integer.toString(numberQueryTerms); + } + + public ScoreDistribution getDistribution(String entrezGeneId) { + while (true) { + String key = getKey(symmetric, numQueryTerms); + Map mim2scoredist = key2scoreDistribution.get(key); + ScoreDistribution scoreDist = null; + if (mim2scoredist != null) { + scoreDist = mim2scoredist.get(entrezGeneId); + } + if (mim2scoredist == null || scoreDist == null) { + logger.error("Could not find scoreDistribution for entrezid {} numQueryTerms: {} symmetric: {} using key: {}" , entrezGeneId, numQueryTerms, symmetric, key); + if (numQueryTerms > 1) { + int oneFewer = numQueryTerms - 1; + logger.error("Trying to find distribution for {} terms", oneFewer); + if (!didParseDistributions(oneFewer)) { + logger.error("Trying to parse {} term distribution", oneFewer); + parseDistributions(oneFewer); + } + } + else { + logger.error("NO WAY! Could not even find scoreDistribution for entrezid {} numQueryTerms: {} symmetric: {} using key: {} - returning null", entrezGeneId, numQueryTerms, symmetric, key); + return null; + } + } + else { + return scoreDist; + } + } + } + + private boolean didParseDistributions(int numQueryTerms) { + return key2scoreDistribution.containsKey(getKey(symmetric, numQueryTerms)); + } + + /** + * + * + * @param numQueryTerms + */ + private synchronized void parseDistributions(int numQueryTerms) { + + String key = getKey(symmetric, numQueryTerms); + String file = distributionsFolder + key + ".out"; + + if (verboseParsing) + logger.info("Reading distributions from file: {}", file); + try (BufferedReader in = new BufferedReader(new FileReader(file))){ + ScoreDistribution actualDistribution = null; + String actualDiseaseId = null; + double numberRandomizations = -1; + List scores = new ArrayList<>(); + List pvalues = new ArrayList<>(); + String line; + while ((line = in.readLine()) != null) { + + if (line.startsWith(">")) { + + line = line.replaceAll(">", ""); + + if (actualDistribution != null) { + actualDistribution.setDistribution(scores, pvalues, numberRandomizations); + addDistribution(actualDiseaseId, actualDistribution); + scores = new ArrayList<>(); + pvalues = new ArrayList<>(); + } + + actualDistribution = new ScoreDistribution(); + + String[] split = line.split("_"); + actualDiseaseId = split[0]; + numberRandomizations = Double.parseDouble(split[1]); + } + else { + int indexFirstMinus = line.indexOf('-'); + Double score; + try { + score = Double.parseDouble(line.substring(0, indexFirstMinus)); + } catch (NumberFormatException e) { + indexFirstMinus = line.indexOf('-', indexFirstMinus + 1); + score = Double.parseDouble(line.substring(0, indexFirstMinus)); + } + Double pValue = Double.parseDouble(line.substring(indexFirstMinus + 1)); + scores.add(score); + pvalues.add(pValue); + } + }// end while + if (verboseParsing) { + logger.info("done while loop.... add last"); + } + if (actualDistribution != null) { + actualDistribution.setDistribution(scores, pvalues, numberRandomizations); + addDistribution(actualDiseaseId, actualDistribution); + } + } catch (IOException e) { + logger.error("Unable access file {} to create PhenIX score distributions", file, e); + } + if (verboseParsing) + logger.info("done parsing"); + } + + private synchronized void addDistribution(String diseaseId, ScoreDistribution actualDistribution) { + String key = getKey(symmetric, numQueryTerms); + key2scoreDistribution.computeIfAbsent(key, mim2scoreDist -> new HashMap<>()).put(diseaseId, actualDistribution); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/HtmlResultsWriter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/HtmlResultsWriter.java new file mode 100644 index 000000000..b591b04c1 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/HtmlResultsWriter.java @@ -0,0 +1,202 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; +import com.fasterxml.jackson.datatype.jdk7.Jdk7Module; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.filters.FilterReport; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.thymeleaf.TemplateEngine; +import org.thymeleaf.context.Context; + +import java.io.BufferedWriter; +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.List; +import java.util.Locale; + +/** + * @author Jules Jacobsen + */ +public class HtmlResultsWriter implements ResultsWriter { + + private static final Logger logger = LoggerFactory.getLogger(HtmlResultsWriter.class); + + private final TemplateEngine templateEngine; + + private static final OutputFormat OUTPUT_FORMAT = OutputFormat.HTML; + + public HtmlResultsWriter(TemplateEngine templateEngine) { + Locale.setDefault(Locale.UK); + this.templateEngine = templateEngine; + } + + @Override + public void writeFile(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + logger.info("Writing HTML results"); + String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); + Path outFile = Paths.get(outFileName); + try (BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { + Context context = buildContext(analysis, analysisResults, settings); + templateEngine.process("results", context, writer); + } catch (IOException ex) { + logger.error("Unable to write results to file {}.", outFileName, ex); + } + logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); + + } + + @Override + public String writeString(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + logger.info("Writing HTML results"); + Context context = buildContext(analysis, analysisResults, settings); + return templateEngine.process("results", context); + } + + private Context buildContext(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + Context context = new Context(); + //write the settings + ObjectMapper mapper = new ObjectMapper(new YAMLFactory()); + //required for correct output of Path types + mapper.registerModule(new Jdk7Module()); + mapper.configure(SerializationFeature.INDENT_OUTPUT, true); + //avoids issues where there are oddities in the analysisSteps - none of these properly de/serialise at present + mapper.configure(SerializationFeature.FAIL_ON_EMPTY_BEANS, false); +// mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); + String jsonSettings = ""; + try { + jsonSettings = mapper.writeValueAsString(analysis); + jsonSettings += mapper.writeValueAsString(settings); + } catch (JsonProcessingException ex) { + logger.error("Unable to process JSON settings", ex); + } + context.setVariable("settings", jsonSettings); + + //make the user aware of any unanalysed variants + List unAnalysedVarEvals = analysisResults.getUnAnnotatedVariantEvaluations(); + context.setVariable("unAnalysedVarEvals", unAnalysedVarEvals); + + //write out the analysis reports section + List analysisStepReports = makeAnalysisStepReports(analysis, analysisResults); + context.setVariable("filterReports", analysisStepReports); + //write out the variant type counters + List variantTypeCounters = makeVariantEffectCounters(analysisResults.getVariantEvaluations()); + List sampleNames = analysisResults.getSampleNames(); + String sampleName = "Anonymous"; + if (!analysisResults.getProbandSampleName().isEmpty()) { + sampleName = analysisResults.getProbandSampleName(); + } + context.setVariable("sampleName", sampleName); + context.setVariable("sampleNames", sampleNames); + context.setVariable("variantTypeCounters", variantTypeCounters); + + List passedGenes = ResultsWriterUtils.getMaxPassedGenes(analysisResults.getGenes(), settings.getNumberOfGenesToShow()); + context.setVariable("genes", passedGenes); + + //this will change the links to the relevant resource. + // For the time being we're going to maintain the original behaviour (UCSC) + // Need to wire it up through the system or it might be easiest to autodetect this from the transcripts of passed variants. + // One of UCSC, ENSEMBL or REFSEQ + context.setVariable("transcriptDb", "UCSC"); + context.setVariable("variantRankComparator", new VariantEvaluation.RankBasedComparator()); + return context; + } + + private List makeVariantEffectCounters(List variantEvaluations) { + return ResultsWriterUtils.makeVariantEffectCounters(variantEvaluations); + } + + private List makeAnalysisStepReports(Analysis analysis, AnalysisResults analysisResults) { + return ResultsWriterUtils.makeFilterReports(analysis, analysisResults); + } + + //TODO: +// /** +// * This function writes out a table representing the PED file of the family +// * being analysed (if a multisample VCF file is being analysed) or the name +// * of the sample (for a single-sample VCF file). +// *

+// * For multisample VCF files, a color code is used to mark the following +// * kinds of samples (individuals): +// *

    +// *
  • Unaffected parent: white
  • +// *
  • Affected (whether parent or not): dark grey
  • +// *
  • Unaffected sibling: light blue
  • +// *
+// * The same color code will be used for showing the genotypes of the +// * individual variants, which hopefully will help in their interpretation. +// * +// * @param out An open file handle (can come from the command line or server +// * versions of Exomiser). +// */ +// public void writePedigreeTable(Writer out) throws IOException { +// int n = this.pedigree.getNumberOfIndividualsInPedigree(); +// if (n == 1) { +// String sampleName = this.pedigree.getSingleSampleName(); +// out.write("\n"); +// out.write(String.format("\n", sampleName)); +// out.write("
Sample name: %s
\n"); +// } else { /* multiple samples */ +// +// out.write("

Analyzed samples

\n"); +// out.write("

affected: red, parent of affected: light blue, unaffected: white

\n"); +// out.write("\n"); +// for (int i = 0; i < n; ++i) { +// List lst = this.pedigree.getPEDFileDatForNthPerson(i); +// String fam = lst.get(0); +// String id = lst.get(1); +// String fathID = lst.get(2); +// String mothID = lst.get(3); +// String sex = lst.get(4); +// String disease = lst.get(5); +// out.write(""); +// if (this.pedigree.isNthPersonAffected(i)) { +// out.write(""); +// } else if (this.pedigree.isNthPersonParentOfAffected(i)) { +// out.write(""); +// } else { +// out.write(""); +// } +// out.write("\n"); +// } +// out.write("
" + fam + "" + id + "" + id + "" + id + "" + fathID + "" + mothID + "" +// + sex + "" + disease + "
\n"); +// out.write("
\n"); +// } +// } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputFormat.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputFormat.java new file mode 100644 index 000000000..8442bef4e --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputFormat.java @@ -0,0 +1,51 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +/** + * Enum for representing the desired format of the output. + * + * @author Jules Jacobsen + */ +public enum OutputFormat { + + HTML("html"), + VCF("vcf"), + TSV_GENE("genes.tsv"), + TSV_VARIANT("variants.tsv"), + PHENOGRID("phenogrid.json"); + + private final String fileExtension; + + OutputFormat(String fileExtension) { + this.fileExtension = fileExtension; + } + + public String getFileExtension() { + return fileExtension; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputSettings.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputSettings.java new file mode 100644 index 000000000..6e3abe784 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputSettings.java @@ -0,0 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public interface OutputSettings { + + static OutputSettingsImp.OutputSettingsBuilder builder() { + return OutputSettingsImp.builder(); + } + + boolean outputPassVariantsOnly(); + + int getNumberOfGenesToShow(); + + Set getOutputFormats(); + + String getOutputPrefix(); + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputSettingsImp.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputSettingsImp.java new file mode 100644 index 000000000..c3b263221 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/OutputSettingsImp.java @@ -0,0 +1,157 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import com.fasterxml.jackson.annotation.JsonProperty; +import com.fasterxml.jackson.annotation.JsonSetter; +import com.fasterxml.jackson.databind.annotation.JsonDeserialize; +import org.monarchinitiative.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; + +import java.util.EnumSet; +import java.util.Objects; +import java.util.Set; + +/** + * Simple bean for storing output format options. + * + * @author Jules Jacobsen + */ +@JsonDeserialize(builder = OutputSettingsBuilder.class) +class OutputSettingsImp implements OutputSettings { + + @JsonProperty + private final boolean outputPassVariantsOnly; + @JsonProperty("numGenes") + private final int numberOfGenesToShow; + private final String outputPrefix; + private final Set outputFormats; + + private OutputSettingsImp(OutputSettingsBuilder builder) { + this.outputPassVariantsOnly = builder.outputPassVariantsOnly; + this.numberOfGenesToShow = builder.numberOfGenesToShow; + this.outputPrefix = builder.outputPrefix; + this.outputFormats = builder.outputFormats; + } + + public static OutputSettingsBuilder builder() { + return new OutputSettingsBuilder(); + } + + public static class OutputSettingsBuilder { + + private boolean outputPassVariantsOnly = false; + private int numberOfGenesToShow = 0; + private String outputPrefix = ""; + private Set outputFormats = EnumSet.of(OutputFormat.HTML); + + private OutputSettingsBuilder() {} + + public OutputSettingsImp build() { + return new OutputSettingsImp(this); + } + + @JsonSetter + public OutputSettingsBuilder outputPassVariantsOnly(boolean outputPassVariantsOnly) { + this.outputPassVariantsOnly = outputPassVariantsOnly; + return this; + } + + @JsonSetter(value = "numGenes") + public OutputSettingsBuilder numberOfGenesToShow(int numberOfGenesToShow) { + this.numberOfGenesToShow = numberOfGenesToShow; + return this; + } + + @JsonSetter + public OutputSettingsBuilder outputPrefix(String outputPrefix) { + this.outputPrefix = outputPrefix; + return this; + } + + @JsonSetter + public OutputSettingsBuilder outputFormats(Set outputFormats) { + this.outputFormats = outputFormats; + return this; + } + } + + @Override + public boolean outputPassVariantsOnly() { + return outputPassVariantsOnly; + } + + @Override + public int getNumberOfGenesToShow() { + return numberOfGenesToShow; + } + + @Override + public Set getOutputFormats() { + return outputFormats; + } + + @Override + public String getOutputPrefix() { + return outputPrefix; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 79 * hash + (this.outputPassVariantsOnly ? 1 : 0); + hash = 79 * hash + this.numberOfGenesToShow; + hash = 79 * hash + Objects.hashCode(this.outputPrefix); + hash = 79 * hash + Objects.hashCode(this.outputFormats); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final OutputSettingsImp other = (OutputSettingsImp) obj; + if (this.outputPassVariantsOnly != other.outputPassVariantsOnly) { + return false; + } + if (this.numberOfGenesToShow != other.numberOfGenesToShow) { + return false; + } + if (!Objects.equals(this.outputPrefix, other.outputPrefix)) { + return false; + } + return Objects.equals(this.outputFormats, other.outputFormats); + } + + @Override + public String toString() { + return "OutputOptions{" + "outputPassVariantsOnly=" + outputPassVariantsOnly + ", numberOfGenesToShow=" + numberOfGenesToShow + ", outputPrefix=" + outputPrefix + ", outputFormats=" + outputFormats + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/PhenogridWriter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/PhenogridWriter.java new file mode 100644 index 000000000..fb8e3c68c --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/PhenogridWriter.java @@ -0,0 +1,102 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.prioritisers.HiPhivePriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.writers.phenogrid.PhenoGrid; +import org.monarchinitiative.exomiser.core.writers.phenogrid.PhenoGridAdaptor; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedWriter; +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.ArrayList; +import java.util.List; + +/** + * + * @author Jules Jacobsen + */ +public class PhenogridWriter implements ResultsWriter { + + private static final Logger logger = LoggerFactory.getLogger(PhenogridWriter.class); + private static final OutputFormat OUTPUT_FORMAT = OutputFormat.PHENOGRID; + + @Override + public void writeFile(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); + Path outFile = Paths.get(outFileName); + + try (BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { + + writer.write(writeString(analysis, analysisResults, settings)); + + } catch (IOException ex) { + logger.error("Unable to write results to file {}.", outFileName, ex); + } + logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); + + } + + @Override + public String writeString(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + List passedGenes = ResultsWriterUtils.getMaxPassedGenes(analysisResults.getGenes(), settings.getNumberOfGenesToShow()); + List hiPhiveResults = new ArrayList<>(); + for (Gene gene : passedGenes) { + if (gene.getPriorityResults().containsKey(PriorityType.HIPHIVE_PRIORITY)) { + HiPhivePriorityResult hiPhiveResult = (HiPhivePriorityResult) gene.getPriorityResult(PriorityType.HIPHIVE_PRIORITY); + hiPhiveResults.add(hiPhiveResult); + } + } + PhenoGridAdaptor phenoGridAdaptor = new PhenoGridAdaptor(); + PhenoGrid phenogrid = phenoGridAdaptor.makePhenoGridFromHiPhiveResults("hiPhive specified phenotypes", hiPhiveResults) ; + return writePhenoGridAsJson(phenogrid); + } + + private String writePhenoGridAsJson(PhenoGrid phenogrid) { + ObjectMapper mapper = new ObjectMapper(); + mapper.configure(SerializationFeature.INDENT_OUTPUT, false); + mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); + try { + return mapper.writeValueAsString(phenogrid); + } catch (JsonProcessingException ex) { + logger.error("Error mapping PhenoGrid to json", ex); + } + return "Error mapping PhenoGrid to json"; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriter.java new file mode 100644 index 000000000..2f5de3fee --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriter.java @@ -0,0 +1,54 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.writers; + +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; + +/** + * + * @author Jules Jacobsen + */ +public interface ResultsWriter { + + /** + * Writes the result data out to the file specified in the ExomiserSettings object. + * + * @param analysis + * @param settings + */ + void writeFile(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings); + + /** + * Writes the result data out to a String. + * + * @param analysis + * @param settings + * @return + */ + String writeString(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings); +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterFactory.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterFactory.java new file mode 100644 index 000000000..2b0b05a85 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterFactory.java @@ -0,0 +1,83 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.writers; + +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; +import org.thymeleaf.TemplateEngine; + +/** + * Provides an entry point for getting a ResultsWriter for a specific format. + * + * @author Jules Jacobsen + * @author Manuel Holtgrewe + */ +@Component +public class ResultsWriterFactory implements ResultsWriter { + + private final TemplateEngine coreTemplateEngine; + + @Autowired + public ResultsWriterFactory(TemplateEngine coreTemplateEngine) { + this.coreTemplateEngine = coreTemplateEngine; + } + + /** + * Build {@link ResultsWriter} for the given {@link OutputFormat}. + * + * @param outputFormat + * the format to use for the output + * @return the constructed {@link ResultsWriter} implementation + */ + public ResultsWriter getResultsWriter(OutputFormat outputFormat) { + switch (outputFormat){ + case TSV_GENE: + return new TsvGeneResultsWriter(); + case TSV_VARIANT: + return new TsvVariantResultsWriter(); + case VCF: + return new VcfResultsWriter(); + case PHENOGRID: + return new PhenogridWriter(); + case HTML: + default: + return new HtmlResultsWriter(coreTemplateEngine); + } + } + + @Override + public void writeFile(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + + } + + @Override + public String writeString(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + return null; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterUtils.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterUtils.java new file mode 100644 index 000000000..4e2ab5780 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterUtils.java @@ -0,0 +1,179 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import com.google.common.collect.ImmutableSet; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.filters.FilterReport; +import org.monarchinitiative.exomiser.core.filters.FilterReportFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.nio.file.Path; +import java.util.*; +import java.util.stream.Collectors; + +/** + * + * @author Jules Jacobsen + */ +public class ResultsWriterUtils { + + private static final Logger logger = LoggerFactory.getLogger(ResultsWriterUtils.class); + + private static final FilterReportFactory filterReportFactory = new FilterReportFactory(); + + private static final String DEFAULT_OUTPUT_DIR = "results"; + + private ResultsWriterUtils() { + //Empty - this is a static class. + } + + /** + * Determines the correct file extension for a file given what was specified + * in the {@link org.monarchinitiative.exomiser.core.ExomiserSettings}. + * + * @param vcfPath + * @param outputPrefix + * @param outputFormat + * @return + */ + public static String makeOutputFilename(Path vcfPath, String outputPrefix, OutputFormat outputFormat) { + if (outputPrefix.isEmpty()) { + String defaultOutputPrefix = String.format("%s/%s-exomiser-results", ResultsWriterUtils.DEFAULT_OUTPUT_DIR, vcfPath.getFileName()); + logger.debug("Output prefix was unspecified. Will write out to: {}", defaultOutputPrefix); + outputPrefix = defaultOutputPrefix; + } + return String.format("%s.%s", outputPrefix, outputFormat.getFileExtension()); + } + + /** + * Make a {@code VariantTypeCounter} object from the list of + * {@code VariantEvaluation}. We use this to print out a table of variant + * class distribution. + * + * @param variantEvaluations + * @return + */ + public static List makeVariantEffectCounters(List variantEvaluations) { + + // all used Jannovar VariantEffects + final Set variantEffects = ImmutableSet.of(VariantEffect.FRAMESHIFT_ELONGATION, + VariantEffect.FRAMESHIFT_TRUNCATION, VariantEffect.FRAMESHIFT_VARIANT, + VariantEffect.INTERNAL_FEATURE_ELONGATION, VariantEffect.FEATURE_TRUNCATION, VariantEffect.MNV, + VariantEffect.STOP_GAINED, VariantEffect.STOP_LOST, VariantEffect.START_LOST, + VariantEffect.SPLICE_ACCEPTOR_VARIANT, VariantEffect.SPLICE_DONOR_VARIANT, + VariantEffect.MISSENSE_VARIANT, VariantEffect.INFRAME_INSERTION, + VariantEffect.DISRUPTIVE_INFRAME_INSERTION, VariantEffect.INFRAME_DELETION, + VariantEffect.DISRUPTIVE_INFRAME_DELETION, + VariantEffect.SPLICE_REGION_VARIANT, VariantEffect.STOP_RETAINED_VARIANT, + VariantEffect.INITIATOR_CODON_VARIANT, VariantEffect.SYNONYMOUS_VARIANT, + VariantEffect.FIVE_PRIME_UTR_TRUNCATION, + VariantEffect.FIVE_PRIME_UTR_INTRON_VARIANT, + VariantEffect.FIVE_PRIME_UTR_INTRON_VARIANT, + VariantEffect.THREE_PRIME_UTR_TRUNCATION, + VariantEffect.THREE_PRIME_UTR_INTRON_VARIANT, + VariantEffect.THREE_PRIME_UTR_EXON_VARIANT, + VariantEffect.CODING_TRANSCRIPT_INTRON_VARIANT, VariantEffect.NON_CODING_TRANSCRIPT_EXON_VARIANT, + VariantEffect.NON_CODING_TRANSCRIPT_INTRON_VARIANT, VariantEffect.UPSTREAM_GENE_VARIANT, + VariantEffect.DOWNSTREAM_GENE_VARIANT, VariantEffect.INTERGENIC_VARIANT); + + VariantEffectCounter variantTypeCounter = makeVariantEffectCounter(variantEvaluations); + final List> freqMaps = variantTypeCounter.getFrequencyMap(variantEffects); + + int numIndividuals = 0; + if (!variantEvaluations.isEmpty()) { + numIndividuals = variantEvaluations.get(0).getNumberOfIndividuals(); + } + + List result = new ArrayList<>(); + Set effects = EnumSet.noneOf(VariantEffect.class); + for (int sampleIdx = 0; sampleIdx < numIndividuals; ++sampleIdx) { + effects.addAll(freqMaps.get(sampleIdx).keySet()); + } + if (variantEvaluations.isEmpty()) { + effects.addAll(variantEffects); + } + + for (VariantEffect effect : effects) { + List typeSpecificCounts = new ArrayList<>(); + for (int sampleIdx = 0; sampleIdx < numIndividuals; ++sampleIdx) { + typeSpecificCounts.add(freqMaps.get(sampleIdx).get(effect)); + } + result.add(new VariantEffectCount(effect, typeSpecificCounts)); + } + + return result; + } + + private static VariantEffectCounter makeVariantEffectCounter(List variantEvaluations) { + if (variantEvaluations.isEmpty()) { + return new VariantEffectCounter(0); + } + + int numIndividuals = variantEvaluations.get(0).getNumberOfIndividuals(); + VariantEffectCounter effectCounter = new VariantEffectCounter(numIndividuals); + + for (VariantEvaluation variantEvaluation : variantEvaluations) { + effectCounter.put(variantEvaluation); + } + return effectCounter; + } + + public static List makeFilterReports(Analysis analysis, AnalysisResults analysisResults) { + return filterReportFactory.makeFilterReports(analysis, analysisResults); + } + + public static List getMaxPassedGenes(List genes, int maxGenes) { + List passedGenes = getPassedGenes(genes); + if (maxGenes == 0) { + logger.info("Maximum gene limit set to {} - Returning all {} genes which have passed filtering.", maxGenes, passedGenes.size()); + return passedGenes; + } + return getMaxGenes(passedGenes, maxGenes); + } + + private static List getPassedGenes(List genes) { + List passedGenes = genes.stream() + .filter(Gene::passedFilters) + .collect(Collectors.toList()); + logger.info("{} of {} genes passed filters", passedGenes.size(), genes.size()); + return passedGenes; + } + + private static List getMaxGenes(List genes, int maxGenes) { + List passedGenes = genes.stream() + .limit(maxGenes) + .collect(Collectors.toList()); + logger.info("Maximum gene limit set to {} - Returning first {} of {} genes which have passed filtering.", maxGenes, maxGenes, genes.size()); + return passedGenes; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ThymeleafConfig.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ThymeleafConfig.java new file mode 100644 index 000000000..d2b2fceef --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/ThymeleafConfig.java @@ -0,0 +1,50 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.writers; + +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.thymeleaf.TemplateEngine; +import org.thymeleaf.templateresolver.ClassLoaderTemplateResolver; +import org.thymeleaf.templateresolver.TemplateResolver; + +/** + * @author Jules Jacobsen + */ +@Configuration +public class ThymeleafConfig { + + @Bean + public TemplateEngine coreTemplateEngine() { + TemplateEngine templateEngine = new TemplateEngine(); + templateEngine.setTemplateResolver(templateResolver()); + return templateEngine; + } + + private TemplateResolver templateResolver() { + TemplateResolver templateResolver = new ClassLoaderTemplateResolver(); + templateResolver.setTemplateMode("HTML5"); + templateResolver.setPrefix("templates/"); + templateResolver.setSuffix(".html"); + templateResolver.setCacheable(true); + return templateResolver; + } +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/TsvGeneResultsWriter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/TsvGeneResultsWriter.java new file mode 100644 index 000000000..3940f98b8 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/TsvGeneResultsWriter.java @@ -0,0 +1,172 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import org.apache.commons.csv.CSVFormat; +import org.apache.commons.csv.CSVPrinter; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.prioritisers.HiPhivePriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.IOException; +import java.nio.charset.StandardCharsets; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.text.DecimalFormat; +import java.util.ArrayList; +import java.util.List; +import java.util.Locale; + +/** + * @author Jules Jacobsen + */ +public class TsvGeneResultsWriter implements ResultsWriter { + + private static final Logger logger = LoggerFactory.getLogger(TsvGeneResultsWriter.class); + + private static final OutputFormat OUTPUT_FORMAT = OutputFormat.TSV_GENE; + + private final CSVFormat format = CSVFormat + .newFormat('\t') + .withQuote(null) + .withRecordSeparator("\n") + .withIgnoreSurroundingSpaces(true) + .withHeader("#GENE_SYMBOL", + "ENTREZ_GENE_ID", + "EXOMISER_GENE_PHENO_SCORE", + "EXOMISER_GENE_VARIANT_SCORE", + "EXOMISER_GENE_COMBINED_SCORE", + "HUMAN_PHENO_SCORE", + "MOUSE_PHENO_SCORE", + "FISH_PHENO_SCORE", + "WALKER_SCORE", + "PHIVE_ALL_SPECIES_SCORE", + "OMIM_SCORE", + "MATCHES_CANDIDATE_GENE", + "HUMAN_PHENO_EVIDENCE", + "MOUSE_PHENO_EVIDENCE", + "FISH_PHENO_EVIDENCE", + "HUMAN_PPI_EVIDENCE", + "MOUSE_PPI_EVIDENCE", + "FISH_PPI_EVIDENCE" + ); + + private final DecimalFormat decimalFormat = new DecimalFormat("0.0000"); + + public TsvGeneResultsWriter() { + Locale.setDefault(Locale.UK); + } + + @Override + public void writeFile(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); + Path outFile = Paths.get(outFileName); + try (CSVPrinter printer = new CSVPrinter(Files.newBufferedWriter(outFile, StandardCharsets.UTF_8), format)) { + writeData(analysisResults, printer); + } catch (IOException ex) { + logger.error("Unable to write results to file {}.", outFileName, ex); + } + logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); + + } + + @Override + public String writeString(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + StringBuilder stringBuilder = new StringBuilder(); + try (CSVPrinter printer = new CSVPrinter(stringBuilder, format)) { + writeData(analysisResults, printer); + } catch (IOException ex) { + logger.error("Unable to write results to string {}.", stringBuilder, ex); + } + return stringBuilder.toString(); + } + + private void writeData(AnalysisResults analysisResults, CSVPrinter printer) throws IOException { + for (Gene gene : analysisResults.getGenes()) { + if (gene.passedFilters()) { + List geneRecord = makeGeneRecord(gene); + printer.printRecord(geneRecord); + } + } + } + + private List makeGeneRecord(Gene gene) { + double humanPhenScore = 0; + double mousePhenScore = 0; + double fishPhenScore = 0; + double walkerScore = 0; + double phiveAllSpeciesScore = 0; + double omimScore = 0; + String phenoEvidence = ""; + //flag to indicate if the gene matches the candidate gene specified by the user + int matchesCandidateGene = 0; + + // priority score calculation + for (PriorityResult prioritiserResult : gene.getPriorityResults().values()) { + PriorityType type = prioritiserResult.getPriorityType(); + if (type == PriorityType.HIPHIVE_PRIORITY) { + HiPhivePriorityResult phenoScore = (HiPhivePriorityResult) prioritiserResult; + phiveAllSpeciesScore = phenoScore.getScore(); + humanPhenScore = phenoScore.getHumanScore(); + mousePhenScore = phenoScore.getMouseScore(); + fishPhenScore = phenoScore.getFishScore(); + walkerScore = phenoScore.getPpiScore(); + phenoEvidence = phenoScore.getPhenotypeEvidenceText(); + if (phenoScore.isCandidateGeneMatch()) { + matchesCandidateGene = 1; + } + } else if (type == PriorityType.OMIM_PRIORITY) { + omimScore = prioritiserResult.getScore(); + } else if (type == PriorityType.EXOMEWALKER_PRIORITY) { + walkerScore = prioritiserResult.getScore(); + } + } + ArrayList values = new ArrayList<>(13); + + values.add(gene.getGeneSymbol()); + values.add(Integer.toString(gene.getEntrezGeneID())); + values.add(decimalFormat.format(gene.getPriorityScore())); + values.add(decimalFormat.format(gene.getVariantScore())); + values.add(decimalFormat.format(gene.getCombinedScore())); + values.add(decimalFormat.format(humanPhenScore)); + values.add(decimalFormat.format(mousePhenScore)); + values.add(decimalFormat.format(fishPhenScore)); + values.add(decimalFormat.format(walkerScore)); + values.add(decimalFormat.format(phiveAllSpeciesScore)); + values.add(decimalFormat.format(omimScore)); + values.add(Integer.toString(matchesCandidateGene)); + values.add(phenoEvidence); + + return values; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/TsvVariantResultsWriter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/TsvVariantResultsWriter.java new file mode 100644 index 000000000..2656b340d --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/TsvVariantResultsWriter.java @@ -0,0 +1,257 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.writers; + +import com.google.common.base.Joiner; +import htsjdk.variant.variantcontext.VariantContext; +import org.apache.commons.csv.CSVFormat; +import org.apache.commons.csv.CSVPrinter; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.TranscriptAnnotation; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityScore; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.IOException; +import java.nio.charset.StandardCharsets; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.text.DecimalFormat; +import java.util.*; + +/** + * @author Max Schubach + */ +public class TsvVariantResultsWriter implements ResultsWriter { + + private static final Logger logger = LoggerFactory.getLogger(TsvGeneResultsWriter.class); + + private static final OutputFormat OUTPUT_FORMAT = OutputFormat.TSV_VARIANT; + + private final CSVFormat format = CSVFormat + .newFormat('\t') + .withQuote(null) + .withRecordSeparator("\n") + .withIgnoreSurroundingSpaces(true) + .withHeader("#CHROM", "POS", "REF", "ALT", "QUAL", "FILTER", "GENOTYPE", "COVERAGE", "FUNCTIONAL_CLASS", "HGVS", "EXOMISER_GENE", + "CADD(>0.483)", "POLYPHEN(>0.956|>0.446)", "MUTATIONTASTER(>0.94)", "SIFT(<0.06)", "REMM", + "DBSNP_ID", "MAX_FREQUENCY", "DBSNP_FREQUENCY", "EVS_EA_FREQUENCY", "EVS_AA_FREQUENCY", + "EXAC_AFR_FREQ", "EXAC_AMR_FREQ", "EXAC_EAS_FREQ", "EXAC_FIN_FREQ", "EXAC_NFE_FREQ", "EXAC_SAS_FREQ", "EXAC_OTH_FREQ", + "EXOMISER_VARIANT_SCORE", "EXOMISER_GENE_PHENO_SCORE", "EXOMISER_GENE_VARIANT_SCORE", "EXOMISER_GENE_COMBINED_SCORE", "CONTRIBUTING_VARIANT"); + + private final DecimalFormat formatter = new DecimalFormat(".##"); + + public TsvVariantResultsWriter() { + Locale.setDefault(Locale.UK); + } + + @Override + public void writeFile(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); + Path outFile = Paths.get(outFileName); + try (CSVPrinter printer = new CSVPrinter(Files.newBufferedWriter(outFile, StandardCharsets.UTF_8), format)) { + writeData(analysis, analysisResults, settings.outputPassVariantsOnly(), printer); + } catch (IOException ex) { + logger.error("Unable to write results to file {}.", outFileName, ex); + } + logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); + + } + + @Override + public String writeString(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + StringBuilder output = new StringBuilder(); + try (CSVPrinter printer = new CSVPrinter(output, format)) { + writeData(analysis, analysisResults, settings.outputPassVariantsOnly(), printer); + } catch (IOException ex) { + logger.error("Unable to write results to string {}.", output, ex); + } + return output.toString(); + } + + private void writeData(Analysis analysis, AnalysisResults analysisResults, boolean writeOnlyPassVariants, CSVPrinter printer) throws IOException { + if (writeOnlyPassVariants) { + logger.info("Writing out only PASS variants"); + for (Gene gene : analysisResults.getGenes()) { + writeOnlyPassVariantsOfGene(gene, printer); + } + } else { + for (Gene gene : analysisResults.getGenes()) { + writeAllVariantsOfGene(gene, printer); + } + } + } + + private void writeOnlyPassVariantsOfGene(Gene gene, CSVPrinter printer) throws IOException { + for (VariantEvaluation ve : gene.getPassedVariantEvaluations()) { + List record = getRecordOfVariant(ve, gene); + printer.printRecord(record); + } + } + + private void writeAllVariantsOfGene(Gene gene, CSVPrinter printer) throws IOException { + for (VariantEvaluation ve : gene.getVariantEvaluations()) { + List record = getRecordOfVariant(ve, gene); + printer.printRecord(record); + } + } + + private List getRecordOfVariant(VariantEvaluation ve, Gene gene) { + List record = new ArrayList<>(); + VariantContext variantContext = ve.getVariantContext(); + // CHROM + record.add(variantContext.getContig()); + // POS + record.add(variantContext.getStart()); + // REF + record.add(variantContext.getReference().getDisplayString()); + // ALT + record.add(variantContext.getAlternateAllele(ve.getAltAlleleId()).getDisplayString()); + // QUAL + record.add(formatter.format(ve.getPhredScore())); + // FILTER + record.add(makeFiltersField(ve)); + // GENOTYPE + record.add(ve.getGenotypeString()); + // COVERAGE + record.add(variantContext.getCommonInfo().getAttributeAsString("DP", "0")); + // FUNCTIONAL_CLASS + record.add(ve.getVariantEffect().getSequenceOntologyTerm()); + // HGVS + record.add(getRepresentativeAnnotation(ve.getAnnotations())); + // EXOMISER_GENE + record.add(ve.getGeneSymbol()); + // CADD + record.add(getPatScore(ve.getPathogenicityData().getCaddScore())); + // POLYPHEN + record.add(getPatScore(ve.getPathogenicityData().getPolyPhenScore())); + // MUTATIONTASTER + record.add(getPatScore(ve.getPathogenicityData().getMutationTasterScore())); + // SIFT + record.add(getPatScore(ve.getPathogenicityData().getSiftScore())); + //MNCDS + record.add(getPatScore(ve.getPathogenicityData().getRemmScore())); + // "DBSNP_ID", "MAX_FREQUENCY", "DBSNP_FREQUENCY", "EVS_EA_FREQUENCY", "EVS_AA_FREQUENCY", + // "EXAC_AFR_FREQ", "EXAC_AMR_FREQ", "EXAC_EAS_FREQ", "EXAC_FIN_FREQ", "EXAC_NFE_FREQ", "EXAC_SAS_FREQ", "EXAC_OTH_FREQ", + addFrequencyData(ve.getFrequencyData(), record); + // EXOMISER_VARIANT_SCORE + record.add(dotIfNull(ve.getVariantScore())); + // EXOMISER_GENE_PHENO_SCORE + record.add(dotIfNull(gene.getPriorityScore())); + // EXOMISER_GENE_VARIANT_SCORE + record.add(dotIfNull(gene.getVariantScore())); + // EXOMISER_GENE_COMBINED_SCORE + record.add(dotIfNull(gene.getCombinedScore())); + // EXOMISER_CONTRIBUTES_TO_SCORE + record.add(ve.contributesToGeneScore() ? "CONTRIBUTING_VARIANT" : "."); + return record; + } + + private void addFrequencyData(FrequencyData frequencyData, List record) { + // DBSNP_ID + record.add(dotIfNull(frequencyData.getRsId())); + // MAX_FREQUENCY + record.add(dotIfNull(frequencyData.getMaxFreq())); + // Don't change the order of these - it's necessary for the data to end up in the correct column + FrequencySource[] experimentalFrequencySources = { + // "DBSNP_FREQUENCY", + FrequencySource.THOUSAND_GENOMES, + // "EVS_EA_FREQUENCY", "EVS_AA_FREQUENCY", + FrequencySource.ESP_EUROPEAN_AMERICAN, FrequencySource.ESP_AFRICAN_AMERICAN, + // "EXAC_AFR_FREQ", "EXAC_AMR_FREQ", "EXAC_EAS_FREQ", "EXAC_FIN_FREQ", "EXAC_NFE_FREQ", "EXAC_SAS_FREQ", "EXAC_OTH_FREQ", + FrequencySource.EXAC_AFRICAN_INC_AFRICAN_AMERICAN, FrequencySource.EXAC_AMERICAN, FrequencySource.EXAC_EAST_ASIAN, FrequencySource.EXAC_FINNISH, FrequencySource.EXAC_NON_FINNISH_EUROPEAN, FrequencySource.EXAC_SOUTH_ASIAN, FrequencySource.EXAC_OTHER}; + for (FrequencySource source : experimentalFrequencySources) { + record.add(dotIfFrequencyNull(frequencyData.getFrequencyForSource(source))); + } + } + + private Object dotIfNull(Object o) { + if (o == null) { + return "."; + } else { + return o; + } + } + + private Object dotIfFrequencyNull(Frequency frequency) { + if (frequency == null) { + return "."; + } else { + return frequency.getFrequency(); + } + } + + private Object getPatScore(PathogenicityScore score) { + if (score == null) { + return "."; + } else { + return score.getScore(); + } + } + + private String makeFiltersField(VariantEvaluation variantEvaluation) { + switch (variantEvaluation.getFilterStatus()) { + case FAILED: + return formatFailedFilters(variantEvaluation.getFailedFilterTypes()); + case PASSED: + return "PASS"; + case UNFILTERED: + default: + return "."; + } + + } + + private String formatFailedFilters(Set failedFilters) { + StringJoiner stringJoiner = new StringJoiner(";"); + for (FilterType filterType : failedFilters) { + stringJoiner.add(filterType.toVcfValue()); + } + return stringJoiner.toString(); + } + + /** + * @return An annotation for a single transcript, representing one of the + * annotations with the most pathogenic annotation. + */ + private String getRepresentativeAnnotation(List annotations) { + if (annotations.isEmpty()) { + return "?"; + } + + TranscriptAnnotation anno = annotations.get(0); + + final Joiner joiner = Joiner.on(":").skipNulls(); + return joiner.join(anno.getGeneSymbol(), + anno.getAccession(), + anno.getHgvsCdna(), + anno.getHgvsProtein()); + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCount.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCount.java new file mode 100644 index 000000000..68ee8739b --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCount.java @@ -0,0 +1,57 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import de.charite.compbio.jannovar.annotation.VariantEffect; + +import java.util.List; + +/** + * + * @author Jules Jacobsen + */ +public class VariantEffectCount { + private final VariantEffect variantEffect; + private final List sampleVariantEffectCounts; + + public VariantEffectCount(VariantEffect variantType, List sampleVariantTypeCounts) { + this.variantEffect = variantType; + this.sampleVariantEffectCounts = sampleVariantTypeCounts; + } + + public VariantEffect getVariantType() { + return variantEffect; + } + + public List getSampleVariantTypeCounts() { + return sampleVariantEffectCounts; + } + + @Override + public String toString() { + return variantEffect + "=" + sampleVariantEffectCounts; + } +} diff --git a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VariantEffectCounter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCounter.java similarity index 79% rename from exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VariantEffectCounter.java rename to exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCounter.java index 9940d2365..bec68d0ea 100644 --- a/exomiser-core/src/main/java/de/charite/compbio/exomiser/core/writers/VariantEffectCounter.java +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCounter.java @@ -1,20 +1,33 @@ -package de.charite.compbio.exomiser.core.writers; +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ -import htsjdk.variant.variantcontext.Genotype; -import htsjdk.variant.variantcontext.VariantContext; - -import java.util.ArrayList; -import java.util.Collection; -import java.util.HashMap; -import java.util.Map; +package org.monarchinitiative.exomiser.core.writers; import com.google.common.collect.ImmutableList; import com.google.common.collect.ImmutableMap; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; import de.charite.compbio.jannovar.annotation.VariantEffect; -import java.util.EnumMap; -import java.util.List; +import htsjdk.variant.variantcontext.Genotype; +import htsjdk.variant.variantcontext.VariantContext; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.*; public class VariantEffectCounter { diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VcfResultsWriter.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VcfResultsWriter.java new file mode 100644 index 000000000..34a8f1655 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/VcfResultsWriter.java @@ -0,0 +1,360 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.writers; + +import com.google.common.collect.ArrayListMultimap; +import com.google.common.collect.Lists; +import com.google.common.collect.Multimap; +import de.charite.compbio.jannovar.htsjdk.VariantContextWriterConstructionHelper; +import htsjdk.variant.variantcontext.VariantContext; +import htsjdk.variant.variantcontext.VariantContextBuilder; +import htsjdk.variant.variantcontext.writer.VariantContextWriter; +import htsjdk.variant.vcf.*; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.analysis.util.InheritanceModeAnalyser; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.ByteArrayOutputStream; +import java.nio.charset.StandardCharsets; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.*; + +import static java.util.stream.Collectors.toList; +import static java.util.stream.Collectors.toSet; + +// TODO(holtgrew): Write out to sorting VariantContextWriter? +/** + * Generate results in VCF format using HTS-JDK. + * + * @see VCF + * Standard + * @author Jules Jacobsen + * @author Manuel Holtgrewe + */ +public class VcfResultsWriter implements ResultsWriter { + + private enum ExomiserVcfInfoField { + + GENE_SYMBOL("ExGeneSymbol", VCFHeaderLineType.String, "Exomiser gene symbol"), + GENE_ID("ExGeneSymbId", VCFHeaderLineType.String, "Exomiser gene id"), + GENE_COMBINED_SCORE("ExGeneSCombi", VCFHeaderLineType.Float, "Exomiser gene combined score"), + GENE_PHENO_SCORE("ExGeneSPheno", VCFHeaderLineType.Float, "Exomiser gene phenotype score"), + GENE_VARIANT_SCORE("ExGeneSVar", VCFHeaderLineType.Float, "Exomiser gene variant score"), + VARIANT_SCORE("ExVarScore", VCFHeaderLineType.Float, "Exomiser variant score"), + VARIANT_EFFECT("ExVarEff", VCFHeaderLineType.String, "Exomiser variant effect"), + VARIANT_HGVS("ExVarHgvs", VCFHeaderLineType.String, "Exomiser variant hgvs"), + ALLELE_CONTRIBUTES("ExContribAltAllele", VCFHeaderLineType.Flag, "Exomiser alt allele id contributing to score"), + WARNING("ExWarn", VCFHeaderLineType.String, "Exomiser warning"); + + private final String id; + private final VCFHeaderLineType vcfHeaderLineType; + private final String description; + + ExomiserVcfInfoField(String id, VCFHeaderLineType vcfHeaderLineType, String description) { + this.id = id; + this.vcfHeaderLineType = vcfHeaderLineType; + this.description = description; + } + + public String getId() { + return id; + } + + public VCFHeaderLineType getVcfHeaderLineType() { + return vcfHeaderLineType; + } + + public String getDescription() { + return description; + } + + VCFHeaderLine getVcfHeaderLine() { + return new VCFInfoHeaderLine(id, VCFHeaderLineCount.A, vcfHeaderLineType, description); + } + } + + private static final Logger logger = LoggerFactory.getLogger(VcfResultsWriter.class); + + private static final OutputFormat OUTPUT_FORMAT = OutputFormat.VCF; + + /** + * Initialize the object, given the original {@link VCFFileReader} from the + * input. + */ + public VcfResultsWriter() { + Locale.setDefault(Locale.UK); + } + + @Override + public void writeFile(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + // create a VariantContextWriter writing to the output file path + String outFileName = ResultsWriterUtils.makeOutputFilename(analysis.getVcfPath(), settings.getOutputPrefix(), OUTPUT_FORMAT); + Path outFile = Paths.get(outFileName); + try (VariantContextWriter writer = VariantContextWriterConstructionHelper.openVariantContextWriter(analysisResults.getVcfHeader(), + outFile.toString(), + getAdditionalHeaderLines(), + false)) { + writeData(analysisResults, settings.outputPassVariantsOnly(), writer); + } + logger.info("{} results written to file {}.", OUTPUT_FORMAT, outFileName); + } + + @Override + public String writeString(Analysis analysis, AnalysisResults analysisResults, OutputSettings settings) { + // create a VariantContextWriter writing to a buffer + ByteArrayOutputStream baos = new ByteArrayOutputStream(); + try (VariantContextWriter writer = VariantContextWriterConstructionHelper.openVariantContextWriter(analysisResults.getVcfHeader(), + baos, + getAdditionalHeaderLines())) { + writeData(analysisResults, settings.outputPassVariantsOnly(), writer); + } + logger.info("{} results written to string buffer", OUTPUT_FORMAT); + return new String(baos.toByteArray(), StandardCharsets.UTF_8); + } + + private void writeData(AnalysisResults analysisResults, boolean writeOnlyPassVariants, VariantContextWriter writer) { + writeUnannotatedVariants(analysisResults, writer); + // actually write the data and close writer again + if (writeOnlyPassVariants) { + logger.info("Writing out only PASS variants"); + writeOnlyPassSampleData(analysisResults, writer); + } else { + writeAllSampleData(analysisResults, writer); + } + } + + private void writeUnannotatedVariants(AnalysisResults analysisResults, VariantContextWriter writer) { + List updatedRecords = updateGeneVariantRecords(null, analysisResults.getUnAnnotatedVariantEvaluations()); + updatedRecords.forEach(writer::add); + } + + private void writeOnlyPassSampleData(AnalysisResults analysisResults, VariantContextWriter writer) { + for (Gene gene : analysisResults.getGenes()) { + List updatedRecords = updateGeneVariantRecords(gene, gene.getPassedVariantEvaluations()); + updatedRecords.forEach(writer::add); + } + } + + /** + * Write the analysisResults as VCF to writer. + * + * writer is already completely initialized, including all + * headers, so data is written out directly for each + * {@link VariantEvaluation} in analysisResults. + * + * @param analysisResults data set to write out + * @param writer writer to write to + */ + private void writeAllSampleData(AnalysisResults analysisResults, VariantContextWriter writer) { + for (Gene gene : analysisResults.getGenes()) { + logger.debug("updating variant records for gene {}", gene); + List updatedRecords = updateGeneVariantRecords(gene, gene.getVariantEvaluations()); + updatedRecords.forEach(writer::add); + } + } + + //this needs a MultiMap (see InheritanceModeAnalyser for this) + private List updateGeneVariantRecords(Gene gene, List variants) { + if (variants.isEmpty()) { + return Collections.emptyList(); + } +// maybe check if the variant is multi-allelic first? + Multimap variantContextToEvaluations = mapVariantEvaluationsToVariantContextString(variants); + return variantContextToEvaluations.asMap() + .values() + .stream() + .map(variantEvaluations -> updateRecord(Lists.newArrayList(variantEvaluations), gene)) + .collect(toList()); + } + + private Multimap mapVariantEvaluationsToVariantContextString(List variantEvaluations) { + //using ArrayListMultimap is important as the order of the values (alleles) must be preserved so that they match the order listed in the ALT field + ArrayListMultimap geneVariants = ArrayListMultimap.create(); + for (VariantEvaluation variantEvaluation : variantEvaluations) { + geneVariants.put(variantContextKeyValue(variantEvaluation.getVariantContext()), variantEvaluation); + } + return geneVariants; + } + + /** + * A {@link VariantContext} cannot be used directly as a key in a Map or put into a Set as it does not override equals or hashCode. + * Also simply using toString isn't an option as the compatible variants returned from the + * {@link InheritanceModeAnalyser#checkInheritanceCompatibilityOfPassedVariants(Gene)} + * are different instances and have had their genotype strings changed. This method solves these problems. + */ + private String variantContextKeyValue(VariantContext variantContext) { + //using StringBuilder instead of String.format as the performance is better and we're going to be doing this for every variant in the VCF + // chr10-123256215-T*-[G, A] + // chr5-11-AC*-[AT] + return variantContext.getContig() + '-' + + variantContext.getStart() + '-' + + variantContext.getReference() + '-' + + variantContext.getAlternateAlleles(); + } + + private VariantContext updateRecord(List variantEvaluations, Gene gene) { + // create a new VariantContextBuilder, based on the original line + // n.b. variantContexts with alternative alleles will be shared between + // the alternative allele variant objects - Exomiser works on a 1 Variant = 1 Allele principle + VariantEvaluation variantEvaluation = variantEvaluations.get(0); + + VariantContext variantContext = variantEvaluation.getVariantContext(); + VariantContextBuilder builder = new VariantContextBuilder(variantContext); + // update filter and info fields and write out to writer. + updateFilterField(builder, variantEvaluation); + updateInfoField(builder, variantEvaluations, gene); + return builder.make(); + } + + /** + * Update the FILTER field of builder given the + * {@link VariantEvaluation}. + */ + private void updateFilterField(VariantContextBuilder builder, VariantEvaluation ve) { + switch (ve.getFilterStatus()) { + case FAILED: + builder.filters(makeFailedFilters(ve.getFailedFilterTypes())); + break; + case PASSED: + builder.filter("PASS"); + break; + case UNFILTERED: + default: + builder.filter("."); + break; + } + } + + /** + * Write all failed filter types from failedFilterTypes into + * builder. + */ + private Set makeFailedFilters(Set failedFilterTypes) { + return failedFilterTypes.stream().map(FilterType::toVcfValue).collect(toSet()); + } + + /** + * @return list of additional {@link VCFHeaderLine}s to write out, + * explaining the Jannovar and Exomiser INFO and FILTER fields + */ + private List getAdditionalHeaderLines() { + List lines = new ArrayList<>(); + + // add INFO descriptions + for (ExomiserVcfInfoField infoField : ExomiserVcfInfoField.values()) { + lines.add(infoField.getVcfHeaderLine()); + } + + // add FILTER descriptions + for (FilterType ft : FilterType.values()) { + lines.add(new VCFFilterHeaderLine(ft.toVcfValue(), ft.toString())); + } + + return lines; + } + + /** + * Update the INFO field of builder given the + * {@link VariantEvaluation} and gene. + */ + private void updateInfoField(VariantContextBuilder builder, List variantEvaluations, Gene gene) { + if (!variantEvaluations.isEmpty() && gene != null) { + builder.attribute(ExomiserVcfInfoField.GENE_SYMBOL.getId(), gene.getGeneSymbol().replace(" ", "_")); + builder.attribute(ExomiserVcfInfoField.GENE_ID.getId(), gene.getGeneId()); + builder.attribute(ExomiserVcfInfoField.GENE_COMBINED_SCORE.getId(), gene.getCombinedScore()); + builder.attribute(ExomiserVcfInfoField.GENE_PHENO_SCORE.getId(), gene.getPriorityScore()); + builder.attribute(ExomiserVcfInfoField.GENE_VARIANT_SCORE.getId(), gene.getVariantScore()); + builder.attribute(ExomiserVcfInfoField.VARIANT_SCORE.getId(), buildVariantScore(variantEvaluations)); //this needs a list of VariantEvaluations to concatenate the fields from in Allele order + builder.attribute(ExomiserVcfInfoField.VARIANT_EFFECT.getId(), buildVariantEffects(variantEvaluations)); + builder.attribute(ExomiserVcfInfoField.VARIANT_HGVS.getId(), buildHgvs(variantEvaluations)); + for (VariantEvaluation variantEvaluation : variantEvaluations) { + if (variantEvaluation.contributesToGeneScore()) { + builder.attribute(ExomiserVcfInfoField.ALLELE_CONTRIBUTES.getId(), variantEvaluation.getAltAlleleId()); + } + } + } else { + builder.attribute(ExomiserVcfInfoField.WARNING.getId(), "VARIANT_NOT_ANALYSED_NO_GENE_ANNOTATIONS"); + } + } + + private String buildVariantScore(List variantEvaluations) { + if (variantEvaluations.size() == 1) { + return String.valueOf(variantEvaluations.get(0).getVariantScore()); + } + StringBuilder variantScoreBuilder = new StringBuilder(); + variantScoreBuilder.append(variantEvaluations.get(0).getVariantScore()); + for (int i = 1; i < variantEvaluations.size(); i++) { + variantScoreBuilder.append(',').append(variantEvaluations.get(i).getVariantScore()); + } + return variantScoreBuilder.toString(); + } + + private String buildVariantEffects(List variantEvaluations) { + if (variantEvaluations.size() == 1) { + return String.valueOf(getSequenceOntologyTerm(variantEvaluations.get(0))); + } + StringBuilder variantEfectBuilder = new StringBuilder(); + variantEfectBuilder.append(getSequenceOntologyTerm(variantEvaluations.get(0))); + for (int i = 1; i < variantEvaluations.size(); i++) { + variantEfectBuilder.append(',').append(getSequenceOntologyTerm(variantEvaluations.get(i))); + } + return variantEfectBuilder.toString(); + } + + private String getSequenceOntologyTerm(VariantEvaluation variantEvaluation) { + return variantEvaluation.getVariantEffect().getSequenceOntologyTerm(); + } + + private String buildHgvs(List variantEvaluations) { + if (variantEvaluations.size() == 1) { + return String.valueOf(variantEvaluations.get(0).getHgvsGenome()); + } + StringBuilder variantHgvsBuilder = new StringBuilder(); + variantHgvsBuilder.append(variantEvaluations.get(0).getHgvsGenome()); + for (int i = 1; i < variantEvaluations.size(); i++) { + variantHgvsBuilder.append(',').append(variantEvaluations.get(i).getHgvsGenome()); + } + return variantHgvsBuilder.toString(); + } + + private String buildContributingAllele(List variantEvaluations) { + if (variantEvaluations.size() == 1) { + return getContributingVariantFlag(variantEvaluations.get(0)); + } + StringBuilder variantHgvsBuilder = new StringBuilder(); + variantHgvsBuilder.append(variantEvaluations.get(0).getHgvsGenome()); + for (int i = 1; i < variantEvaluations.size(); i++) { + variantHgvsBuilder.append(',').append(getContributingVariantFlag(variantEvaluations.get(0))); + } + return variantHgvsBuilder.toString(); + } + + private String getContributingVariantFlag(VariantEvaluation variantEvaluation) { + return variantEvaluation.contributesToGeneScore() ? ExomiserVcfInfoField.ALLELE_CONTRIBUTES.getId() : "."; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGrid.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGrid.java new file mode 100644 index 000000000..81eade4c5 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGrid.java @@ -0,0 +1,60 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import com.fasterxml.jackson.annotation.JsonProperty; + +import java.util.List; + +/** + * Used for storing results of a phenotypic analysis of a sample against a set + * of input phenotypes. This is used to output json for use by the Monarch + * Phenogrid JavaScript widget. + * + * @author Jules Jacobsen + */ +public class PhenoGrid { + + private final PhenoGridQueryTerms phenoGridQueryTerms; + + private final List phenoGridMatchGroups; + + public PhenoGrid(PhenoGridQueryTerms phenoGridQueryTerms, List phenoGridMatchGroups) { + this.phenoGridQueryTerms = phenoGridQueryTerms; + this.phenoGridMatchGroups = phenoGridMatchGroups; + } + + @JsonProperty("input_terms") + public PhenoGridQueryTerms getPhenoGridQueryTerms() { + return phenoGridQueryTerms; + } + + @JsonProperty("matches") + public List getPhenoGridMatchGroups() { + return phenoGridMatchGroups; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridAdaptor.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridAdaptor.java new file mode 100644 index 000000000..e6d0029d6 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridAdaptor.java @@ -0,0 +1,154 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.prioritisers.HiPhivePriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneDiseaseModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.*; + +/** + * Makes a Phenogrid from a set of HiPhivePriorityResults + * @author Jules Jacobsen + */ +public class PhenoGridAdaptor { + + private static final Logger logger = LoggerFactory.getLogger(PhenoGridAdaptor.class); + + protected static final PhenoGridMatchTaxon HUMAN_TAXON = new PhenoGridMatchTaxon("NCBITaxon:9606", "Homo sapiens"); + protected static final PhenoGridMatchTaxon MOUSE_TAXON = new PhenoGridMatchTaxon("NCBITaxon:10090", "Mus musculus"); + protected static final PhenoGridMatchTaxon FISH_TAXON = new PhenoGridMatchTaxon("NCBITaxon:7955", "Danio rerio"); + + public PhenoGrid makePhenoGridFromHiPhiveResults(String phenoGridId, List hiPhiveResults) { + Set phenotypeIds = new LinkedHashSet<>(); + if (!hiPhiveResults.isEmpty()) { + HiPhivePriorityResult result = hiPhiveResults.get(0); + for (PhenotypeTerm phenoTerm : result.getQueryPhenotypeTerms()) { + phenotypeIds.add(phenoTerm.getId()); + } + } + PhenoGridQueryTerms phenoGridQueryTerms = new PhenoGridQueryTerms(phenoGridId, phenotypeIds); + + List diseaseModels = new ArrayList<>(); + List mouseModels = new ArrayList<>(); + List fishModels = new ArrayList<>(); + + for (HiPhivePriorityResult result : hiPhiveResults) { + for (GeneModelPhenotypeMatch model : result.getPhenotypeEvidence()) { + switch(model.getOrganism()) { + case HUMAN: + diseaseModels.add(model); + break; + case MOUSE: + mouseModels.add(model); + break; + case FISH: + fishModels.add(model); + break; + } + } + } + List phenoGridMatchGroups = createPhenogridMatchGroups(phenotypeIds, diseaseModels, mouseModels, fishModels); + + return new PhenoGrid(phenoGridQueryTerms, phenoGridMatchGroups); + } + + private List createPhenogridMatchGroups(Set phenotypeIds, List diseaseModels, List mouseModels, List fishModels) { + List phenoGridMatchGroups = new ArrayList<>(); + + if (!diseaseModels.isEmpty()){ + PhenoGridMatchGroup diseaseMatchGroup = makePhenoGridMatchGroup(HUMAN_TAXON, diseaseModels, phenotypeIds); + phenoGridMatchGroups.add(diseaseMatchGroup); + } + + if (!mouseModels.isEmpty()){ + PhenoGridMatchGroup mouseMatchGroup = makePhenoGridMatchGroup(MOUSE_TAXON, mouseModels, phenotypeIds); + phenoGridMatchGroups.add(mouseMatchGroup); + } + + if(!fishModels.isEmpty()) { + PhenoGridMatchGroup fishMatchGroup = makePhenoGridMatchGroup(FISH_TAXON, fishModels, phenotypeIds); + phenoGridMatchGroups.add(fishMatchGroup); + } + + return phenoGridMatchGroups; + } + + private PhenoGridMatchGroup makePhenoGridMatchGroup(PhenoGridMatchTaxon taxon, List geneModelPhenotypeMatches, Set phenotypeIds) { + List phenoGridMatches = makePhenogridMatchesFromModels(geneModelPhenotypeMatches, taxon); + PhenoGridMatchGroup phenoGridMatchGroup = new PhenoGridMatchGroup(phenoGridMatches, phenotypeIds); + return phenoGridMatchGroup; + } + + private List makePhenogridMatchesFromModels(List diseaseGeneModels, PhenoGridMatchTaxon taxon) { + List phenoGridMatches = new ArrayList<>(); + //the models will be ordered according to the exomiser combined score, we want to re-order things purely by phenotype score + Collections.sort(diseaseGeneModels, new DescendingScoreBasedModelComparator()); + + int modelCount = 0; + for (GeneModelPhenotypeMatch geneModelPhenotypeMatch : diseaseGeneModels) { + PhenoGridMatchScore score = new PhenoGridMatchScore("hiPhive", (int) (geneModelPhenotypeMatch.getScore() * 100f), modelCount++); + logger.debug("Made new {} score modelScore:{} gridScore:{} rank:{}", geneModelPhenotypeMatch.getOrganism(), geneModelPhenotypeMatch + .getScore(), score.getScore(), score.getRank()); + List phenotypeMatches = geneModelPhenotypeMatch.getBestModelPhenotypeMatches(); + if (geneModelPhenotypeMatch.getOrganism() == Organism.HUMAN) { + PhenoGridMatch match = makeDiseasePhenoGridMatch(geneModelPhenotypeMatch, phenotypeMatches, score, taxon); + phenoGridMatches.add(match); + } else { + PhenoGridMatch match = makeGenePhenoGridMatch(geneModelPhenotypeMatch, phenotypeMatches, score, taxon); + phenoGridMatches.add(match); + } + } + + return phenoGridMatches; + } + + private PhenoGridMatch makeDiseasePhenoGridMatch(GeneModelPhenotypeMatch geneModelPhenotypeMatch, List phenotypeMatches, PhenoGridMatchScore score, PhenoGridMatchTaxon taxon) { + GeneDiseaseModel geneDiseaseModel = (GeneDiseaseModel) geneModelPhenotypeMatch.getModel(); + return new PhenoGridMatch(geneDiseaseModel.getDiseaseId(), geneDiseaseModel.getDiseaseTerm(), "disease", phenotypeMatches, score, taxon); + } + + private PhenoGridMatch makeGenePhenoGridMatch(GeneModelPhenotypeMatch geneModelPhenotypeMatch, List phenotypeMatches, PhenoGridMatchScore score, PhenoGridMatchTaxon taxon) { + GeneOrthologModel geneOrthologModel = (GeneOrthologModel) geneModelPhenotypeMatch.getModel(); + return new PhenoGridMatch(geneOrthologModel.getModelGeneId(), geneOrthologModel.getModelGeneSymbol(), "gene", phenotypeMatches, score, taxon); + } + + private static class DescendingScoreBasedModelComparator implements Comparator { + @Override + public int compare(GeneModelPhenotypeMatch model1, GeneModelPhenotypeMatch model2) { + //we want the results in descending order i.e. greater score first + return - Double.compare(model1.getScore(), model2.getScore()); + } + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatch.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatch.java new file mode 100644 index 000000000..ca5840a51 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatch.java @@ -0,0 +1,140 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; + +import java.util.List; +import java.util.Objects; +import java.util.Set; +import java.util.TreeSet; + +/** + * Data transport object for outputting phenotype match data to a disease or + * gene phenotype. + * + * @author Jules Jacobsen + */ +public class PhenoGridMatch { + + private final String id; + private final String label; + private final String type; + + private final List matches; + private final PhenoGridMatchScore score; + private final PhenoGridMatchTaxon taxon; + + public PhenoGridMatch(String id, String label, String type, List phenotypeMatches, PhenoGridMatchScore score, PhenoGridMatchTaxon taxon) { + this.id = id; + this.label = label; + this.type = type; + this.matches = phenotypeMatches; + this.score = score; + this.taxon = taxon; + } + + public String getId() { + return id; + } + + public String getLabel() { + return label; + } + + public String getType() { + return type; + } + + public List getMatches() { + return matches; + } + + public PhenoGridMatchScore getScore() { + return score; + } + + public PhenoGridMatchTaxon getTaxon() { + return taxon; + } + + @JsonIgnore + public Set getQueryTermIds() { + Set queryTermIds = new TreeSet<>(); + for (PhenotypeMatch phenotypeMatch : matches) { + PhenotypeTerm queryPhenotype = phenotypeMatch.getQueryPhenotype(); + queryTermIds.add(queryPhenotype.getId()); + } + return queryTermIds; + } + + @Override + public int hashCode() { + int hash = 3; + hash = 53 * hash + Objects.hashCode(this.id); + hash = 53 * hash + Objects.hashCode(this.label); + hash = 53 * hash + Objects.hashCode(this.type); + hash = 53 * hash + Objects.hashCode(this.matches); + hash = 53 * hash + Objects.hashCode(this.score); + hash = 53 * hash + Objects.hashCode(this.taxon); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final PhenoGridMatch other = (PhenoGridMatch) obj; + if (!Objects.equals(this.id, other.id)) { + return false; + } + if (!Objects.equals(this.label, other.label)) { + return false; + } + if (!Objects.equals(this.type, other.type)) { + return false; + } + if (!Objects.equals(this.matches, other.matches)) { + return false; + } + if (!Objects.equals(this.score, other.score)) { + return false; + } + return Objects.equals(this.taxon, other.taxon); + } + + @Override + public String toString() { + return "PhenoGridMatch{" + "id=" + id + ", label=" + label + ", type=" + type + ", #matches=" + matches.size() + ", score=" + score + ", taxon=" + taxon + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchGroup.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchGroup.java new file mode 100644 index 000000000..7d168ccb8 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchGroup.java @@ -0,0 +1,96 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import com.fasterxml.jackson.annotation.JsonProperty; + +import java.util.*; + +/** + * Data transport object for representing all gene/disease phenotype matches for + * an organism to a set of query phenotype ids. + * + * For example: + * http://www.monarchinitiative.org/simsearch/phenotype?input_items=HP:0000218,HP:0000238,HP:0000244,HP:0000303,HP:0000316,HP:0000327,HP:0000486,HP:0000494,HP:0000586,HP:0000678,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003070,HP:0005347,HP:0006101,HP:0010055,HP:0011304,HP:0005280,HP:0003795,HP:0004440,HP:0000452,HP:0000453,HP:0001159,HP:0003041,HP:0003196,HP:0006110&target_species=9606&limit=10 + * + * @author Jules Jacobsen + */ +public class PhenoGridMatchGroup { + + private final List matches; + private final Set queryPhenotypeTermIds; + //what's this cutoff for? the IC? + private static final int CUTOFF = 10; + + public PhenoGridMatchGroup(List matches, Collection queryPhenotypeTermIds) { + this.matches = matches; + this.queryPhenotypeTermIds = new TreeSet<>(queryPhenotypeTermIds); + } + + @JsonProperty("b") + public List getMatches() { + return matches; + } + + @JsonProperty("a") + public Set getQueryPhenotypeTermIds() { + return queryPhenotypeTermIds; + } + + @JsonProperty("cutoff") + public int getCutOff() { + return CUTOFF; + } + + @Override + public int hashCode() { + int hash = 3; + hash = 17 * hash + Objects.hashCode(this.matches); + hash = 17 * hash + Objects.hashCode(this.queryPhenotypeTermIds); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final PhenoGridMatchGroup other = (PhenoGridMatchGroup) obj; + if (!Objects.equals(this.matches, other.matches)) { + return false; + } + return Objects.equals(this.queryPhenotypeTermIds, other.queryPhenotypeTermIds); + } + + @Override + public String toString() { + return "PhenoGridMatchGroup{" + "matches=" + matches + ", queryPhenotypeTermIds=" + queryPhenotypeTermIds + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchScore.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchScore.java new file mode 100644 index 000000000..9dbe94630 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchScore.java @@ -0,0 +1,91 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import java.util.Objects; + +/** + * + * @author Jules Jacobsen + */ +public class PhenoGridMatchScore { + + private final String metric; + private final int score; + private final int rank; + + public PhenoGridMatchScore(String metric, int score, int rank) { + this.metric = metric; + this.score = score; + this.rank = rank; + } + + public String getMetric() { + return metric; + } + + public int getScore() { + return score; + } + + public int getRank() { + return rank; + } + + @Override + public int hashCode() { + int hash = 3; + hash = 89 * hash + Objects.hashCode(this.metric); + hash = 89 * hash + this.score; + hash = 89 * hash + this.rank; + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final PhenoGridMatchScore other = (PhenoGridMatchScore) obj; + if (!Objects.equals(this.metric, other.metric)) { + return false; + } + if (this.score != other.score) { + return false; + } + return this.rank == other.rank; + } + + + @Override + public String toString() { + return "PhenoGridMatchScore{" + "metric=" + metric + ", score=" + score + ", rank=" + rank + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTaxon.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTaxon.java new file mode 100644 index 000000000..4da8dc909 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTaxon.java @@ -0,0 +1,80 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import java.util.Objects; + +/** + * + * @author Jules Jacobsen + */ +public class PhenoGridMatchTaxon { + + private final String id; + private final String label; + + public PhenoGridMatchTaxon(String id, String label) { + this.id = id; + this.label = label; + } + + public String getId() { + return id; + } + + public String getLabel() { + return label; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 29 * hash + Objects.hashCode(this.id); + hash = 29 * hash + Objects.hashCode(this.label); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final PhenoGridMatchTaxon other = (PhenoGridMatchTaxon) obj; + if (!Objects.equals(this.id, other.id)) { + return false; + } + return Objects.equals(this.label, other.label); + } + + @Override + public String toString() { + return "PhenoGridMatchTaxon{" + "id=" + id + ", label=" + label + '}'; + } + +} diff --git a/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridQueryTerms.java b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridQueryTerms.java new file mode 100644 index 000000000..9abd4e785 --- /dev/null +++ b/exomiser-core/src/main/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridQueryTerms.java @@ -0,0 +1,55 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import com.fasterxml.jackson.annotation.JsonProperty; + +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public class PhenoGridQueryTerms { + + private final String id; + private final Set phenotypeIds; + + public PhenoGridQueryTerms(String id, Set phenotypeIds) { + this.id = id; + this.phenotypeIds = phenotypeIds; + } + + public String getId() { + return id; + } + + @JsonProperty("phenotype_list") + public Set getPhenotypeIds() { + return phenotypeIds; + } + +} diff --git a/exomiser-core/src/main/resources/buildversion.properties b/exomiser-core/src/main/resources/buildversion.properties deleted file mode 100644 index 9ab8d0c2e..000000000 --- a/exomiser-core/src/main/resources/buildversion.properties +++ /dev/null @@ -1,3 +0,0 @@ -#exomiser build version and date of build -buildVersion=${project.version} -buildTimestamp=${build.timestamp} \ No newline at end of file diff --git a/exomiser-core/src/main/resources/html/css/exomiser.css b/exomiser-core/src/main/resources/html/css/exomiser.css deleted file mode 100644 index 6f3654da9..000000000 --- a/exomiser-core/src/main/resources/html/css/exomiser.css +++ /dev/null @@ -1,115 +0,0 @@ -/* - Created on : 10-Jun-2014, 17:07:12 - Author : jules jacobsen -*/ -body {font-family: sans-serif; - color: #000000; - background-color: #FFFFFF; - margin: 0; - padding: 0; -} -h1 { - color: #336699; -} -h2,h3,h4 { - text-align: left; -} -h2 { - color: #336699; -} -a { - color: #336699; -} -p { - text-align: justify; - line-height: 120%; - padding-left: 2em; -} -p.small { - font-size: 80%; -} -table.summary { margin-left: auto;margin-right: auto;width: 80%;text-align:left;} -.summary th {text-align: center; background-color: #336699;color: #FFFFFF;padding: 0.4em;font-size: 100%} -.summary td{ text-align: left;background-color: #DDDDDD;color: #000000;padding: 0.4em;font-size: 75%} -table.priority {margin-left: auto;margin-right: auto;width: 90%;text-align:left; border-collapse: collapse; border-width: 2px; border-spacing: 2px; border-style: solid;border-color: black; background-color: white} -.priority th {padding: 0.4em; border-width: 1px;padding: 1px;border-style: inset;border-color: gray;background-color: white;} -.priority td {color:black;background-color:#FFFFFF; border-width: 1px;word-break:break-all;padding: 1px;border-style: inset;border-color: gray;} -.priority td.g {border:2px dotted #0070C0; padding: 10px;} -.priority tr.d0 td { background-color: #FFFFFF; color: black;} -.priority tr.d1 td { background-color: #DDDDDD; color: black;} -table#qy {margin-left: auto;margin-right: auto;text-align:left; font-size:75%;border-collapse: collapse; border-width: 1px; border-spacing: 1px; border-style: solid;border-color: black; background-color: white} -table.ztable {border: 1px solid #DFDFDF;margin-left: auto;margin-right: auto;width: 80%;text-align: left;-moz-border-radius: 3px;-webkit-border-radius: 3px;border-radius: 3px;font-family: Arial,"Bitstream Vera Sans",Helvetica,Verdana,sans-serif;color: #333;} -table.ztable td, th {border-top-color: white;border-bottom: 1px solid #DFDFDF;color: #555;} -table.ztable th {text-shadow: rgba(255, 255, 255, 0.796875) 0px 1px 0px;font-family: Georgia,"Times New Roman","Bitstream Charter",Times,serif;font-weight: bold;padding: 7px 7px 8px;text-align: left;line-height: 1.3em;font-size: 14px;} -table.ztable td {font-size: 12px;padding: 4px 7px 2px;vertical-align: top;} -td.w { background-color: #FFFFFF; } -td.lb { background-color: #A9F5F2; } -td.b { background-color: #424242; color: red; } -div.w { background-color: #FFFFFF; display: inline-block; } -div.lb { background-color: #A9F5F2;display: inline-block; } -div.b { background-color: #424242; color: red;display: inline-block; } -#header { - border-bottom: 1px; - margin-bottom: 0; - height: 100px; - padding: 0; - margin-top: 0; - background-color: #336699; - color: #FFFFFF; - width: 100%; - font-size: 250%; - text-align: center; - padding: 0.3em; -} -#topmenu { - margin-left: auto; - margin-right: auto; - background-color: #DDDDDD; - color: #336699; - width: 100%; - font-size: 120%; - text-align: center; - padding: 0.3em; -} -#topmenu a { - text-decoration: none; - padding: 0.3em; -} -#topmenu a:hover { - background-color: #336699; - color: #DDDDDD; -} -#main { - padding: 0px; - margin-left: 20px; - border-left: 1px; - margin-right: 20px; - border-bottom: 10px; -} -hr {border: 0;width: 80%;color: #f00;background-color: #ADD8E6;height: 5px;} -#footer { - border-bottom: 1px; - border-top: 1px; - margin-bottom: 0; - height: 20px; - padding: 0; - margin-top: 0; - background-color: #336699; - color: #FFFFFF; - width: 100%; - font-size: 100%; - text-align: center; - padding: 0.3em; -} -#footer p { - color: white; - font-size: 85%; - border: 0; - margin: 0; - padding: 0.2em; - padding-left: 2em; -} -#footer a { - color: white; -} - diff --git a/exomiser-core/src/main/resources/html/templates/originalResults.html b/exomiser-core/src/main/resources/html/templates/originalResults.html deleted file mode 100644 index 5f54aa086..000000000 --- a/exomiser-core/src/main/resources/html/templates/originalResults.html +++ /dev/null @@ -1,147 +0,0 @@ - - - - - The Exomiser - A Tool to Annotate and Prioritise Whole-Exome Sequencing Data - - - - - - - - - -
-

- Analysis Settings -

-

Settings used for this analysis:

-
settings
-

- Filtering Summary -

- - - - - - - - - - - - - - - - - -
FilterParametersVariants passed filterVariants failed filter
-
    -
    -
    - -

    - Variant type distribution -

    - - - - - - - - - - - - - - -
    Variant TypeSample name 1Sample name 2
    - - -

    Analyzed samples

    - -

    affected: red, parent of affected: light blue, unaffected: white

    - - - - - - - - - - - - -
    Sample name: manuel
    famfathIDmothIDsexdisease
    -
    -
    - - -

    Prioritized Variant List

    -
    - - - - - - - - - - - -
    VariantVariant analysisPhenotypic analysis
    - Pathogenicity: - Frequency -
    -

    About

    -

    - The Exomizer is a Java program that functionally annotates variants from whole-exome - sequencing data starting from a VCF file (version 4). The functional annotation code is - based on Jannovar and uses - UCSC KnownGene transcript definitions and - hg19 genomic coordinates -

    -

    - Variants are prioritized according to user-defined criteria on variant frequency, pathogenicity, - quality, inheritance pattern, and model organism phenotype data. Predicted pathogenicity data - was extracted from the dbNSFP resource. -

    -

    - Developed by the Computational Biology and Bioinformatics group at the - Institute for Medical Genetics and Human Genetics of the - Charité - Universitätsmedizin Berlin and the Mouse - Informatics Group at the Sanger Institute. -

    -
    - - - - - diff --git a/exomiser-core/src/main/resources/html/templates/results.html b/exomiser-core/src/main/resources/html/templates/results.html deleted file mode 100644 index 8f89bd18b..000000000 --- a/exomiser-core/src/main/resources/html/templates/results.html +++ /dev/null @@ -1,255 +0,0 @@ - - - - - - The Exomiser - A Tool to Annotate and Prioritise Whole-Exome Sequencing Data - - - - - - -
    -

    - Exomiser Analysis Results for Slartibartfast -

    - -
    -
    -

    Analysis Settings

    -
    -

    Settings used for this analysis:

    -
    ExomiserSettings{vcfFilePath=Pfeiffer.vcf, pedFilePath=null, prioritiser=exomiser-mouse, maximumFrequency=1.0, minimumQuality=0.0, geneticInterval=null, removePathFilterCutOff=false, removeDbSnp=false, removeOffTargetVariants=true, candidateGene=, modeOfInheritance=AUTOSOMAL_DOMINANT, diseaseId=OMIM:101600, hpoIds=[], seedGeneList=[], numberOfGenesToShow=0, outFileName=results/Pfeiffer-exomiser-results, outputFormat=[HTML], diseaseGeneFamilyName=, buildVersion=, buildTimestamp=}
    -
    -
    - -
    -
    -

    Filtering Summary

    -
    -
    - - - - - - - - - - - - - - - - - -
    FilterReportPassed filterFailed filter
    Frequency Filter -
      Allele frequency < 1.00 %
    -
    1691620793
    -
    -
    -
    -
    -

    Variant Type Distribution

    -
    -
    - - - - - - - - - - - - - - - - - -
    Variant TypeSlartibartfast
    MISSENSE1
    -
    -
    - - -

    Analyzed samples

    - //if there is a multi-sample pedigree we want to see the analysis: - //HTMLTable.writePedigreeTable() -

    affected: red, parent of affected: light blue, unaffected: white

    - - - - - - - if (this.pedigree.isNthPersonAffected(i)) { - - } else if (this.pedigree.isNthPersonParentOfAffected(i)) { - - } else { - - } - - - - - -
    Sample name: manuel
    famidididfathIDmothIDsexdisease
    - - -
    -
    -

    Prioritised Genes

    -
    -
    - - - - - - -
    -
    -
    -

    - FGFR2 -

    -
    -
    -
    -
    - Exomiser Score: 1.005 -
    -
    - Phenotype Score: 1.004 -
    -
    - Variant Score: 1.005 -
    -
    - -
    -
    - MISSENSE - chr10:g.123256215T>G [0/1] - - rs141235720 - - (variation viewer) - -
    -
    - -
    -
    Transcripts:
    -
    - uc001lfg.4 exon6:c.518A> C:p.E173A -
    -
    -
    -
    - -
    -
    Pathogenicity Data:
    -
    1.00
    -
    No pathogenicity data
    -
    Mutation Taster: 0.999 (P)
    -
    -
    -
    - -
    -
    Frequency Data:
    -
    No frequency data
    -
    1000Genomes: 0.02%
    -
    -
    -
    -
    -
    -
    - -
    -
    -

    Unanalysed Variants

    -
    -
    -
    -
    - MISSENSE - chr10:g.123256215T>G [0/1] - - rs141235720 - - (variation viewer) - -
    -
    -
    -
    - -
    -

    About

    -

    - The Exomizer is a Java program that functionally annotates variants from whole-exome - sequencing data starting from a VCF file (version 4). The functional annotation code is - based on Jannovar and uses - UCSC KnownGene transcript definitions and - hg19 genomic coordinates -

    -

    - Variants are prioritized according to user-defined criteria on variant frequency, pathogenicity, - quality, inheritance pattern, and model organism phenotype data. Predicted pathogenicity data - was extracted from the dbNSFP resource. -

    -

    - Developed by the Computational Biology and Bioinformatics group at the - Institute for Medical Genetics and Human Genetics of the - Charité - Universitätsmedizin Berlin and the Mouse - Informatics Group at the Sanger Institute. -

    - - -

    Problems, suggestions, or comments? Please let us know

    -
    -
    - - diff --git a/exomiser-core/src/main/resources/jdbc.properties b/exomiser-core/src/main/resources/jdbc.properties deleted file mode 100644 index 2c081ed4e..000000000 --- a/exomiser-core/src/main/resources/jdbc.properties +++ /dev/null @@ -1,35 +0,0 @@ -# -# The Exomiser - A tool to annotate and prioritize variants -# -# Copyright (C) 2012 - 2016 Charite Universittsmedizin Berlin and Genome Research Ltd. -# -# This program is free software: you can redistribute it and/or modify -# it under the terms of the GNU Affero General Public License as -# published by the Free Software Foundation, either version 3 of the -# License, or (at your option) any later version. -# -# This program is distributed in the hope that it will be useful, -# but WITHOUT ANY WARRANTY; without even the implied warranty of -# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -# GNU Affero General Public License for more details. -# -# You should have received a copy of the GNU Affero General Public License -# along with this program. If not, see . -# - -#This file contains the connection details needed for connecting to the Exomiser -#database via JDBC. The H2 database is the default, preferred connection, but if -#you want to run multiple exomiser processes you'll want to make sure the -#PostgreSQL connection details match that of your set-up. - -#Exomiser connection properties -h2.url=jdbc:h2:file:${h2Path}/exomiser;MODE=PostgreSQL;SCHEMA=EXOMISER;DATABASE_TO_UPPER=FALSE;IFEXISTS=TRUE;AUTO_RECONNECT=TRUE;ACCESS_MODE_DATA=r; -h2.username=sa -h2.password= - -#Exomiser PostgreSQL - these values are supplied by the user in the user-configurable application.properties -pg.username=${dbuser} -pg.password=${password} -pg.server=${server} -pg.database=${database} -pg.port=${port} diff --git a/exomiser-core/src/main/resources/templates/fragments/variant.html b/exomiser-core/src/main/resources/templates/fragments/variant.html new file mode 100644 index 000000000..c71550963 --- /dev/null +++ b/exomiser-core/src/main/resources/templates/fragments/variant.html @@ -0,0 +1,93 @@ + + + + + + + + +
    +
    + MISSENSE + chr10:g.123256215T>G + [0/1] + + rs141235720 + + (variation viewer) + + +
    + + +
    + Variant + score: 0.600 + CONTRIBUTING VARIANT +
    +
    Transcripts:
    +
    + FGFR2:uc001lfg.4:c.518A>C:p.E173A + FGFR2:ENST00000429361.1:c.518A>C:p.E173A + FGFR2:NM_000141:c.518A>C:p.E173A +
    +
    +
    +
    + +
    +
    Pathogenicity Data:
    +
    1.00 +
    +
    No pathogenicity data
    +
    Mutation + Taster: 0.999 (P) +
    +
    +
    +
    + +
    +
    Frequency Data:
    +
    No frequency data
    +
    + 1000Genomes: 0.02% +
    +
    +
    +
    + + + + \ No newline at end of file diff --git a/exomiser-core/src/main/resources/templates/results.html b/exomiser-core/src/main/resources/templates/results.html new file mode 100644 index 000000000..8744f0a52 --- /dev/null +++ b/exomiser-core/src/main/resources/templates/results.html @@ -0,0 +1,315 @@ + + + + + + + The Exomiser - A Tool to Annotate and Prioritise Whole-Exome Sequencing Data + + + + + + +
    +

    + Exomiser Analysis Results for + Slartibartfast +

    + +
    +
    +

    Analysis Settings

    +
    +

    Settings used for this analysis:

    +
    ExomiserSettings{vcfFilePath=Pfeiffer.vcf, pedFilePath=null, prioritiser=exomiser-mouse, maximumFrequency=1.0, minimumQuality=0.0, geneticInterval=null, removePathFilterCutOff=false, removeDbSnp=false, removeOffTargetVariants=true, candidateGene=, modeOfInheritance=AUTOSOMAL_DOMINANT, diseaseId=OMIM:101600, hpoIds=[], seedGeneList=[], numberOfGenesToShow=0, outFileName=results/Pfeiffer-exomiser-results, outputFormat=[HTML], diseaseGeneFamilyName=, buildVersion=, buildTimestamp=}
    +
    +
    + +
    +
    +

    Filtering Summary

    +
    +
    + + + + + + + + + + + + + + + + + +
    FilterReportPassed filterFailed filter
    Frequency +
      Allele frequency < 1.00 % +
    +
    1691620793
    +
    +
    +
    +
    +

    Variant Type Distribution

    +
    +
    + + + + + + + + + + + + + + + + + +
    Variant TypeSlartibartfast
    MISSENSE1
    +
    +
    + + +

    Analyzed samples

    + //if there is a multi-sample pedigree we want to see the analysis: + //HTMLTable.writePedigreeTable() +

    affected: red, parent of affected: light blue, unaffected: white

    + + + + + + + if (this.pedigree.isNthPersonAffected(i)) { + + } else if (this.pedigree.isNthPersonParentOfAffected(i)) { + + } else { + + } + + + + + +
    Sample name: manuel
    famidididfathIDmothIDsexdisease
    + + +
    +
    +

    Prioritised Genes

    +
    +
    +
    +
    +
    +
    +

    + FGFR2 + FGFR2 + FGFR2 +

    +
    +
    +

    Exomiser Score: 1.005

    +
    +
    +

    Phenotype Score: 1.005

    +
    +
    +

    Variant Score: 1.005

    +
    +
    +
    +
    +
    +
    + Phenotype matches: +
    +
    + +
    +
    + Top ranked variants: +
    +
    +
    +
    + MISSENSE + + chr10:g.123256215T>G [0/1] + + rs141235720 + + + (variation + viewer) + + + +
    +
    + Variant + score: 0.600 + CONTRIBUTING VARIANT +
    +
    Transcripts:
    +
    + FGFR2:uc001lfg.4:c.518A>C:p.E173A + FGFR2:ENST00000429361.1:c.518A>C:p.E173A + FGFR2:NM_000141:c.518A>C:p.E173A +
    +
    +
    +
    + +
    +
    Pathogenicity Data:
    +
    1.00 +
    +
    No + pathogenicity data +
    +
    Mutation Taster: 0.999 (P) +
    +
    +
    +
    + +
    +
    Frequency Data:
    +
    No frequency data
    +
    + 1000Genomes: 0.02% +
    +
    +
    +
    +
    +
    + +
    +
    +

    Unanalysed Variants

    +
    +
    +
    +
    + MISSENSE + + chr10:g.123256215T>G [0/1] + + rs141235720 + + (variation viewer) + +
    +
    +
    +
    + +
    +

    About

    +

    + The Exomizer is a Java program that functionally annotates variants from whole-exome + sequencing data starting from a VCF file (version 4). The functional annotation code is + based on Jannovar and uses + UCSC KnownGene transcript definitions and + hg19 genomic coordinates +

    +

    + Variants are prioritized according to user-defined criteria on variant frequency, pathogenicity, + quality, inheritance pattern, and model organism phenotype data. Predicted pathogenicity data + was extracted from the dbNSFP resource. +

    +

    + Developed by the Computational Biology and Bioinformatics group at the + Institute for Medical Genetics and Human Genetics of the + Charité - Universitätsmedizin Berlin and the Mouse + Informatics Group at the Sanger Institute. +

    + + +

    Problems, suggestions, or comments? Please let us know

    +
    +
    + + diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/ExomiserTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/ExomiserTest.java deleted file mode 100644 index 210ce579c..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/ExomiserTest.java +++ /dev/null @@ -1,80 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.AnalysisFactory; -import de.charite.compbio.exomiser.core.analysis.AnalysisMode; -import de.charite.compbio.exomiser.core.factories.*; -import de.charite.compbio.exomiser.core.prioritisers.PriorityFactoryImpl; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import java.nio.file.Paths; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class ExomiserTest { - - private Exomiser instance; - - private final SampleDataFactory sampleDataFactory = TestFactory.buildDefaultSampleDataFactory(); - private final VariantDataService stubDataService = new VariantDataServiceStub(); - - private final AnalysisFactory analysisFactory = new AnalysisFactory(sampleDataFactory, new PriorityFactoryImpl(), stubDataService); - - @Before - public void setUp() { - instance = new Exomiser(analysisFactory); - } - - private Analysis makeAnalysisWithMode(AnalysisMode analysisMode) { - Analysis analysis = new Analysis(Paths.get("src/test/resources/smallTest.vcf")); - analysis.setAnalysisMode(analysisMode); - return analysis; - } - - @Test - public void canRunAnalysis_Full() { - Analysis analysis = makeAnalysisWithMode(AnalysisMode.FULL); - instance.run(analysis); - } - - @Test - public void canRunAnalysis_Sparse() { - Analysis analysis = makeAnalysisWithMode(AnalysisMode.SPARSE); - instance.run(analysis); - } - - @Test - public void canRunAnalysis_PassOnly() { - Analysis analysis = makeAnalysisWithMode(AnalysisMode.PASS_ONLY); - instance.run(analysis); - } - - } diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisFactoryTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisFactoryTest.java deleted file mode 100644 index 58be6c70b..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisFactoryTest.java +++ /dev/null @@ -1,276 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.analysis.AnalysisFactory.AnalysisBuilder; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.factories.VariantDataServiceStub; -import de.charite.compbio.exomiser.core.filters.FrequencyFilter; -import de.charite.compbio.exomiser.core.filters.PassAllVariantEffectsFilter; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.*; - -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.*; - -import static org.hamcrest.CoreMatchers.*; -import static org.hamcrest.MatcherAssert.assertThat; - -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import org.junit.Before; -import org.junit.Test; - -/** - * @author Jules Jacobsen - */ -public class AnalysisFactoryTest { - - private AnalysisFactory instance; - private PriorityFactory priorityFactory; - - private AnalysisBuilder analysisBuilder; - private List steps; - - private List hpoIds; - - - @Before - public void setUp() { - VariantDataService stubVariantDataService = new VariantDataServiceStub(); - priorityFactory = new NoneTypePriorityFactoryStub(); - - instance = new AnalysisFactory(null, priorityFactory, stubVariantDataService); - - hpoIds = Arrays.asList("HP:0001156", "HP:0001363", "HP:0011304", "HP:0010055"); - steps = new ArrayList<>(); - - Path vcfPath = Paths.get("test.vcf"); - analysisBuilder = instance.getAnalysisBuilder(vcfPath); - } - - private List analysisSteps() { - return analysisBuilder.build().getAnalysisSteps(); - } - - @Test - public void testCanMakeFullAnalysisRunner() { - AnalysisRunner analysisRunner = instance.getAnalysisRunnerForMode(AnalysisMode.FULL); - assertThat(SimpleAnalysisRunner.class.isInstance(analysisRunner), is(true)); - } - - @Test - public void testCanMakeSparseAnalysisRunner() { - AnalysisRunner analysisRunner = instance.getAnalysisRunnerForMode(AnalysisMode.SPARSE); - assertThat(SparseAnalysisRunner.class.isInstance(analysisRunner), is(true)); - } - - @Test - public void testCanMakePassOnlyAnalysisRunner() { - AnalysisRunner analysisRunner = instance.getAnalysisRunnerForMode(AnalysisMode.PASS_ONLY); - assertThat(PassOnlyAnalysisRunner.class.isInstance(analysisRunner), is(true)); - } - - @Test - public void testAnalysisBuilderPedPath_default() { - assertThat(analysisBuilder.build().getPedPath(), nullValue()); - } - - @Test - public void testAnalysisBuilderPedPath() { - Path pedPath = Paths.get("ped.ped"); - analysisBuilder.pedPath(pedPath); - assertThat(analysisBuilder.build().getPedPath(), equalTo(pedPath)); - } - - @Test - public void testAnalysisBuilderHpoIds_default() { - assertThat(analysisBuilder.build().getHpoIds(), equalTo(Collections.emptyList())); - } - - @Test - public void testAnalysisBuilderHpoIds() { - analysisBuilder.hpoIds(hpoIds); - assertThat(analysisBuilder.build().getHpoIds(), equalTo(hpoIds)); - } - - @Test - public void testAnalysisBuilderModeOfInheritance_default() { - assertThat(analysisBuilder.build().getModeOfInheritance(), equalTo(ModeOfInheritance.UNINITIALIZED)); - } - - @Test - public void testAnalysisBuilderModeOfInheritance() { - analysisBuilder.modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT); - assertThat(analysisBuilder.build().getModeOfInheritance(), equalTo(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - } - - @Test - public void testAnalysisBuilderScoringMode_default() { - assertThat(analysisBuilder.build().getScoringMode(), equalTo(ScoringMode.RAW_SCORE)); - } - - @Test - public void testAnalysisBuilderScoringMode() { - analysisBuilder.scoringMode(ScoringMode.RANK_BASED); - assertThat(analysisBuilder.build().getScoringMode(), equalTo(ScoringMode.RANK_BASED)); - } - - @Test - public void testAnalysisBuilderAnalysisMode_default() { - assertThat(analysisBuilder.build().getAnalysisMode(), equalTo(AnalysisMode.PASS_ONLY)); - } - - @Test - public void testAnalysisBuilderAnalysisMode() { - analysisBuilder.analysisMode(AnalysisMode.FULL); - assertThat(analysisBuilder.build().getAnalysisMode(), equalTo(AnalysisMode.FULL)); - } - - @Test - public void testAnalysisBuilderFrequencySources_default() { - assertThat(analysisBuilder.build().getFrequencySources(), equalTo(Collections.emptySet())); - } - - @Test - public void testAnalysisBuilderFrequencySources() { - EnumSet frequencySources = EnumSet.of(FrequencySource.ESP_AFRICAN_AMERICAN, FrequencySource.EXAC_EAST_ASIAN); - analysisBuilder.frequencySources(frequencySources); - assertThat(analysisBuilder.build().getFrequencySources(), equalTo(frequencySources)); - } - - @Test - public void testAnalysisBuilderPathogenicitySources_default() { - assertThat(analysisBuilder.build().getPathogenicitySources(), equalTo(Collections.emptySet())); - } - - @Test - public void testAnalysisBuilderPathogenicitySources() { - EnumSet pathogenicitySources = EnumSet.of(PathogenicitySource.REMM, PathogenicitySource.SIFT); - analysisBuilder.pathogenicitySources(pathogenicitySources); - assertThat(analysisBuilder.build().getPathogenicitySources(), equalTo(pathogenicitySources)); - } - - @Test - public void testAnalysisBuilderCanBuildCompleteAnalysis() { - EnumSet pathogenicitySources = EnumSet.of(PathogenicitySource.REMM, PathogenicitySource.SIFT); - EnumSet frequencySources = EnumSet.of(FrequencySource.ESP_AFRICAN_AMERICAN, FrequencySource.EXAC_EAST_ASIAN); - FrequencyFilter frequencyFilter = new FrequencyFilter(1f); - PhivePriority phivePrioritiser = priorityFactory.makePhivePrioritiser(hpoIds); - - analysisBuilder.hpoIds(hpoIds) - .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT) - .analysisMode(AnalysisMode.FULL) - .frequencySources(frequencySources) - .pathogenicitySources(pathogenicitySources) - .addAnalysisStep(frequencyFilter) - .addPhivePrioritiser(hpoIds); - - Analysis analysis = analysisBuilder.build(); - assertThat(analysis.getHpoIds(), equalTo(hpoIds)); - assertThat(analysis.getModeOfInheritance(), equalTo(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - assertThat(analysis.getAnalysisMode(), equalTo(AnalysisMode.FULL)); - assertThat(analysis.getFrequencySources(), equalTo(frequencySources)); - assertThat(analysis.getPathogenicitySources(), equalTo(pathogenicitySources)); - assertThat(analysis.getAnalysisSteps(), hasItem(frequencyFilter)); - assertThat(analysis.getAnalysisSteps(), hasItem(phivePrioritiser)); - //check that the order of analysis steps is preserved - assertThat(analysis.getAnalysisSteps(), equalTo(Arrays.asList(frequencyFilter, phivePrioritiser))); - } - - @Test - public void testCanSpecifyOmimPrioritiser() { - Prioritiser prioritiser = priorityFactory.makeOmimPrioritiser(); - - analysisBuilder.addOmimPrioritiser(); - - assertThat(analysisSteps(), hasItem(prioritiser)); - } - - @Test - public void testCanSpecifyPhivePrioritiser() { - steps.add(priorityFactory.makePhivePrioritiser(hpoIds)); - - analysisBuilder.addPhivePrioritiser(hpoIds); - - assertThat(analysisSteps(), equalTo(steps)); - } - - @Test - public void testCanSpecifyHiPhivePrioritiser_noOptions() { - steps.add(priorityFactory.makeHiPhivePrioritiser(hpoIds, new HiPhiveOptions())); - - analysisBuilder.addHiPhivePrioritiser(hpoIds); - - assertThat(analysisSteps(), equalTo(steps)); - } - - @Test - public void testCanSpecifyHiPhivePrioritiser_withOptions() { - HiPhiveOptions options = new HiPhiveOptions("DISEASE:123", "GENE1", "human,mouse,fish,ppi"); - - steps.add(priorityFactory.makeHiPhivePrioritiser(hpoIds, options)); - - analysisBuilder.addHiPhivePrioritiser(hpoIds, options); - - assertThat(analysisSteps(), equalTo(steps)); - } - - @Test - public void testCanSpecifyPhenixPrioritiser() { - steps.add(priorityFactory.makePhenixPrioritiser(hpoIds)); - - analysisBuilder.addPhenixPrioritiser(hpoIds); - - assertThat(analysisSteps(), equalTo(steps)); - } - - @Test - public void testCanSpecifyExomeWalkerPrioritiser() { - List seedGenes = new ArrayList<>(Arrays.asList(1, 2, 3, 4)); - steps.add(priorityFactory.makeExomeWalkerPrioritiser(seedGenes)); - - analysisBuilder.addExomeWalkerPrioritiser(seedGenes); - - assertThat(analysisSteps(), equalTo(steps)); - } - - @Test - public void testCanSpecifyTwoPrioritisers() { - steps.add(priorityFactory.makeOmimPrioritiser()); - steps.add(priorityFactory.makePhivePrioritiser(hpoIds)); - - analysisBuilder.addOmimPrioritiser(); - analysisBuilder.addPhivePrioritiser(hpoIds); - - assertThat(analysisSteps(), equalTo(steps)); - } - - @Test - public void testCanAddFilterStep() { - AnalysisStep filter = new PassAllVariantEffectsFilter(); - steps.add(filter); - - analysisBuilder.addAnalysisStep(filter); - - assertThat(analysisSteps(), equalTo(steps)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisParserTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisParserTest.java deleted file mode 100644 index b9b771e33..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisParserTest.java +++ /dev/null @@ -1,388 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.analysis.AnalysisParser.AnalysisFileNotFoundException; -import de.charite.compbio.exomiser.core.analysis.AnalysisParser.AnalysisParserException; -import de.charite.compbio.exomiser.core.factories.VariantDataServiceStub; -import de.charite.compbio.exomiser.core.filters.EntrezGeneIdFilter; -import de.charite.compbio.exomiser.core.filters.FrequencyFilter; -import de.charite.compbio.exomiser.core.filters.PriorityScoreFilter; -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.IntervalFilter; -import de.charite.compbio.exomiser.core.filters.KnownVariantFilter; -import de.charite.compbio.exomiser.core.filters.PathogenicityFilter; -import de.charite.compbio.exomiser.core.filters.QualityFilter; -import de.charite.compbio.exomiser.core.filters.VariantEffectFilter; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.HiPhiveOptions; -import de.charite.compbio.exomiser.core.prioritisers.HiPhivePriority; -import de.charite.compbio.exomiser.core.prioritisers.NoneTypePriorityFactoryStub; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriority; -import de.charite.compbio.exomiser.core.prioritisers.PriorityFactory; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.prioritisers.ScoringMode; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import de.charite.compbio.exomiser.core.writers.OutputSettings; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.EnumSet; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; -import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class AnalysisParserTest { - - private AnalysisParser instance; - private PriorityFactory priorityFactory; - - private SampleData sampleData; - private List analysisSteps; - - private List hpoIds; - private Set frequencySources; - private Set pathogenicitySources; - - @Before - public void setUp() { - priorityFactory = new NoneTypePriorityFactoryStub(); - instance = new AnalysisParser(priorityFactory, new VariantDataServiceStub()); - - sampleData = new SampleData(); - sampleData.setVcfPath(Paths.get("test.vcf")); - sampleData.setPedPath(null); - - analysisSteps = new ArrayList<>(); - hpoIds = new ArrayList<>(Arrays.asList("HP:0001156", "HP:0001363", "HP:0011304", "HP:0010055")); - frequencySources = EnumSet.of(FrequencySource.THOUSAND_GENOMES, FrequencySource.ESP_AFRICAN_AMERICAN, FrequencySource.EXAC_AFRICAN_INC_AFRICAN_AMERICAN); - pathogenicitySources = EnumSet.of(PathogenicitySource.SIFT, PathogenicitySource.POLYPHEN, PathogenicitySource.MUTATION_TASTER); - } - - private static String addStepToAnalysis(String step) { - return String.format("analysis:\n" - + " vcf: test.vcf\n" - + " ped:\n" - + " modeOfInheritance: AUTOSOMAL_DOMINANT\n" - + " hpoIds: ['HP:0001156', 'HP:0001363', 'HP:0011304', 'HP:0010055']\n" - + " analysisMode: PASS_ONLY \n" - + " geneScoreMode: RAW_SCORE\n" - + " frequencySources: [THOUSAND_GENOMES, ESP_AFRICAN_AMERICAN, EXAC_AFRICAN_INC_AFRICAN_AMERICAN]\n" - + " pathogenicitySources: [SIFT, POLYPHEN, MUTATION_TASTER]\n" - + " steps: [" - + " %s\n" - + "]", step); - } - - @Test - public void testParseAnalysisSteps_NoSteps() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("")); - System.out.println(analysis); - assertThat(analysis.getVcfPath(), equalTo(Paths.get("test.vcf"))); - assertThat(analysis.getPedPath(), nullValue()); - assertThat(analysis.getModeOfInheritance(), equalTo(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - assertThat(analysis.getHpoIds(), equalTo(hpoIds)); - assertThat(analysis.getScoringMode(), equalTo(ScoringMode.RAW_SCORE)); - assertThat(analysis.getAnalysisMode(), equalTo(AnalysisMode.PASS_ONLY)); - assertThat(analysis.getFrequencySources(), equalTo(frequencySources)); - assertThat(analysis.getPathogenicitySources(), equalTo(pathogenicitySources)); - assertThat(analysis.getAnalysisSteps().isEmpty(), is(true)); - } - - @Test(expected = AnalysisParserException.class) - public void throwsExceptionWhenNoVcfIsSet() { - instance.parseAnalysis( - "analysis:\n" - + " vcf: \n" - ); - } - - @Test - public void testParseAnalysis_FullAnalysisMode() { - Analysis analysis = instance.parseAnalysis( - "analysis:\n" - + " vcf: test.vcf\n" - + " analysisMode: FULL \n" - + " "); - assertThat(analysis.getAnalysisMode(), equalTo(AnalysisMode.FULL)); - } - - @Test - public void testParseAnalysisStep_UnsupportedFilterAddsNothingToAnalysisSteps() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("wibbleFilter: {}")); - assertThat(analysis.getAnalysisSteps().isEmpty(), is(true)); - } - - @Test - public void testParseAnalysisStep_IntervalFilter() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("intervalFilter: {interval: 'chr10:122892600-122892700'}")); - analysisSteps.add(new IntervalFilter(new GeneticInterval(10, 122892600, 122892700))); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_GeneIdFilter() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("geneIdFilter: {geneIds: [12345, 34567, 98765]}")); - analysisSteps.add(new EntrezGeneIdFilter(new LinkedHashSet<>(Arrays.asList(12345, 34567, 98765)))); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_QualityFilter() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("qualityFilter: {minQuality: 50.0}")); - analysisSteps.add(new QualityFilter(50.0f)); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_VariantEffectFilter() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("variantEffectFilter: {remove: [SYNONYMOUS_VARIANT, INTERGENIC_VARIANT]}")); - analysisSteps.add(new VariantEffectFilter(EnumSet.of(VariantEffect.SYNONYMOUS_VARIANT, VariantEffect.INTERGENIC_VARIANT))); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test(expected = AnalysisParserException.class) - public void testParseAnalysisStep_VariantEffectFilter_illegalVariantEffect() { - instance.parseAnalysis(addStepToAnalysis("variantEffectFilter: {remove: [WIBBLE]}")); - } - - @Test - public void testParseAnalysisStep_KnownVariantFilterFilter() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("knownVariantFilter: {}")); - analysisSteps.add(new KnownVariantFilter()); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test(expected = AnalysisParserException.class) - public void testParseAnalysisStep_FrequencyFilterNoFrequencySourcesDefined() { - String script = "analysis:\n" - + " vcf: test.vcf\n" - + " frequencySources: []\n" - + " steps: [" - + " frequencyFilter: {maxFrequency: 1.0}\n" - + "]"; - - instance.parseAnalysis(script); - } - - @Test - public void testParseAnalysisStep_FrequencyFilter() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("frequencyFilter: {maxFrequency: 1.0}")); - analysisSteps.add(new FrequencyFilter(1.0f)); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test(expected = AnalysisParserException.class) - public void testParseAnalysisStep_PathogenicityFilterNoPathSourcesDefined() { - String script = "analysis:\n" - + " vcf: test.vcf\n" - + " pathogenicitySources: []\n" - + " steps: [" - + " pathogenicityFilter: {keepNonPathogenic: false}\n" - + "]"; - - instance.parseAnalysis(script); - } - - @Test - public void testParseAnalysisStep_PathogenicityFilter() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("pathogenicityFilter: {keepNonPathogenic: false}")); - analysisSteps.add(new PathogenicityFilter(false)); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_PriorityScoreFilter() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("priorityScoreFilter: {priorityType: HIPHIVE_PRIORITY, minPriorityScore: 0.65}")); - analysisSteps.add(new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, 0.65f)); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_InheritanceFilterUndefinedMode() { - Analysis analysis = instance.parseAnalysis( - "analysis:\n" - + " vcf: test.vcf\n" - + " ped:\n" - + " modeOfInheritance: UNINITIALIZED\n" - + " hpoIds: []\n" - + " analysisMode: PASS_ONLY \n" - + " geneScoreMode: RAW_SCORE\n" - + " pathogenicitySources: []\n" - + " frequencySources: []\n" - + " steps: [" - + " inheritanceFilter: {}\n" - + "]"); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_InheritanceFilterDefinedMode() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("inheritanceFilter: {}")); - analysisSteps.add(new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_OmimPrioritiser() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("omimPrioritiser: {}")); - analysisSteps.add(priorityFactory.makeOmimPrioritiser()); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_HiPhivePrioritiserWithDefaultOptions() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("hiPhivePrioritiser: {}")); - analysisSteps.add(priorityFactory.makeHiPhivePrioritiser(hpoIds, new HiPhiveOptions())); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_HiPhivePrioritiserWithUserDefinedOptions() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("hiPhivePrioritiser: {diseaseId: 'OMIM:101600', candidateGeneSymbol: FGFR2, runParams: 'human,mouse,fish,ppi'}")); - analysisSteps.add(priorityFactory.makeHiPhivePrioritiser(hpoIds, new HiPhiveOptions("OMIM:101600", "FGFR2", "human,mouse,fish,ppi"))); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_PhivePrioritiser() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("phivePrioritiser: {}")); - analysisSteps.add(priorityFactory.makePhivePrioritiser(hpoIds)); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_PhenixPrioritiser() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("phenixPrioritiser: {}")); - analysisSteps.add(priorityFactory.makePhenixPrioritiser(hpoIds)); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisStep_WalkerPrioritiser() { - Analysis analysis = instance.parseAnalysis(addStepToAnalysis("exomeWalkerPrioritiser: {seedGeneIds: [11111, 22222, 33333]}")); - analysisSteps.add(priorityFactory.makeExomeWalkerPrioritiser(new ArrayList<>(Arrays.asList(11111, 22222, 33333)))); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test - public void testParseAnalysisFileFromPath() { - ModeOfInheritance modeOfInheritance = ModeOfInheritance.AUTOSOMAL_DOMINANT; - - Analysis analysis = instance.parseAnalysis(Paths.get("src/test/resources/analysisExample.yml")); - System.out.println(analysis); - assertThat(analysis.getVcfPath(), equalTo(Paths.get("test.vcf"))); - assertThat(analysis.getPedPath(), nullValue()); - assertThat(analysis.getHpoIds(), equalTo(hpoIds)); - assertThat(analysis.getModeOfInheritance(), equalTo(modeOfInheritance)); - assertThat(analysis.getScoringMode(), equalTo(ScoringMode.RAW_SCORE)); - assertThat(analysis.getFrequencySources(), equalTo(frequencySources)); - assertThat(analysis.getPathogenicitySources(), equalTo(pathogenicitySources)); - analysisSteps.add(new IntervalFilter(new GeneticInterval(10, 123256200, 123256300))); - analysisSteps.add(new EntrezGeneIdFilter(new LinkedHashSet<>(Arrays.asList(12345, 34567, 98765)))); - analysisSteps.add(new QualityFilter(50.0f)); - analysisSteps.add(new VariantEffectFilter(EnumSet.of(VariantEffect.SYNONYMOUS_VARIANT))); - analysisSteps.add(new KnownVariantFilter()); - analysisSteps.add(new FrequencyFilter(1.0f)); - analysisSteps.add(new PathogenicityFilter(false)); - analysisSteps.add(new InheritanceFilter(modeOfInheritance)); - analysisSteps.add(new OMIMPriority()); - analysisSteps.add(new HiPhivePriority(hpoIds, new HiPhiveOptions(), null)); - analysisSteps.add(new HiPhivePriority(hpoIds, new HiPhiveOptions("OMIM:101600", "FGFR2", "mouse,fish,human,ppi"), null)); - analysisSteps.add(new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, 0.7f)); - assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); - } - - @Test(expected = AnalysisFileNotFoundException.class) - public void testParseAnalysis_NonExistentFile() { - instance.parseAnalysis(Paths.get("src/test/resources/wibble")); - } - - @Test(expected = AnalysisFileNotFoundException.class) - public void testParseOutputSettings_NonExistentFile() { - instance.parseOutputSettings(Paths.get("src/test/resources/wibble")); - } - - @Test(expected = AnalysisParserException.class) - public void testParseOutputSettings_OutputPassVariantsOnlyThrowsExceptionWithNoValue() { - instance.parseOutputSettings( - "outputOptions:\n" - + " outputPassVariantsOnly: "); - } - - @Test - public void testParseOutputSettings_OutputPassVariantsOnly() { - OutputSettings outputSettings = instance.parseOutputSettings( - "outputOptions:\n" - + " outputPassVariantsOnly: true\n" - + " numGenes: 1\n" - + " outputPrefix: results/Pfeiffer-hiphive\n" - + " outputFormats: [HTML, TSV-GENE, TSV-VARIANT, VCF]\n"); - assertThat(outputSettings.outputPassVariantsOnly(), is(true)); - } - - @Test - public void testParseOutputSettings_NumGenesToShow() { - OutputSettings outputSettings = instance.parseOutputSettings( - "outputOptions:\n" - + " outputPassVariantsOnly: true\n" - + " numGenes: 1\n" - + " outputPrefix: results/Pfeiffer-hiphive\n" - + " outputFormats: [HTML, TSV-GENE, TSV-VARIANT, VCF]\n"); - assertThat(outputSettings.getNumberOfGenesToShow(), equalTo(1)); - } - - @Test - public void testParseOutputSettings_OutputPrefix() { - OutputSettings outputSettings = instance.parseOutputSettings( - "outputOptions:\n" - + " outputPassVariantsOnly: true\n" - + " numGenes: 1\n" - + " outputPrefix: results/Pfeiffer-hiphive\n" - + " outputFormats: [HTML, TSV-GENE, TSV-VARIANT, VCF]\n"); - assertThat(outputSettings.getOutputPrefix(), equalTo("results/Pfeiffer-hiphive")); - } - - @Test - public void testParseOutputSettings_OutputFormats() { - OutputSettings outputSettings = instance.parseOutputSettings( - "outputOptions:\n" - + " outputPassVariantsOnly: true\n" - + " numGenes: 1\n" - + " outputPrefix: results/Pfeiffer-hiphive\n" - + " outputFormats: [HTML, TSV-GENE, TSV-VARIANT, VCF]\n"); - Set outputFormats = EnumSet.of(OutputFormat.HTML, OutputFormat.TSV_GENE, OutputFormat.TSV_VARIANT, OutputFormat.VCF); - assertThat(outputSettings.getOutputFormats(), equalTo((outputFormats))); - } - - @Test - public void testParseOutputSettings() { - OutputSettings outputSettings = instance.parseOutputSettings(Paths.get("src/test/resources/analysisExample.yml")); - OutputSettings expected = new OutputSettingsImp.OutputSettingsBuilder() - .outputPassVariantsOnly(false) - .numberOfGenesToShow(0) - .outputPrefix("results/Pfeiffer-hiphive") - .outputFormats(EnumSet.of(OutputFormat.TSV_GENE, OutputFormat.TSV_VARIANT, OutputFormat.VCF, OutputFormat.HTML)) - .build(); - assertThat(outputSettings, equalTo(expected)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunnerSuite.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunnerSuite.java deleted file mode 100644 index 3b0efb184..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunnerSuite.java +++ /dev/null @@ -1,12 +0,0 @@ -package de.charite.compbio.exomiser.core.analysis; - -import org.junit.runner.RunWith; -import org.junit.runners.Suite; - -/** - * @author Jules Jacobsen - */ -@RunWith(Suite.class) -@Suite.SuiteClasses({SimpleAnalysisRunnerTest.class, SparseAnalysisRunnerTest.class, PassOnlyAnalysisRunnerTest.class}) -public class AnalysisRunnerSuite { -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunnerTestBase.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunnerTestBase.java deleted file mode 100644 index 31f98fe42..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisRunnerTestBase.java +++ /dev/null @@ -1,82 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.factories.*; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.Arrays; -import java.util.List; -import java.util.Map; -import static java.util.stream.Collectors.toMap; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Contains common methods required by the AnalysisRunnerTest classes. - * - * @author Jules Jacobsen - */ -public abstract class AnalysisRunnerTestBase { - - private static final Logger logger = LoggerFactory.getLogger(AnalysisRunnerTestBase.class); - - final Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); - - final Path twoAffectedPedPath = Paths.get("src/test/resources/inheritance/twoAffected.ped"); - final Path childAffectedPedPath = Paths.get("src/test/resources/inheritance/childAffected.ped"); - final Path inheritanceFilterVCFPath = Paths.get("src/test/resources/inheritance/inheritanceFilterTest.vcf"); - - final SampleDataFactory sampleDataFactory = TestFactory.buildDefaultSampleDataFactory(); - final VariantDataService stubDataService = new VariantDataServiceStub(); - - - Analysis makeAnalysis(Path vcfPath, AnalysisStep... analysisSteps) { - Analysis analysis = new Analysis(vcfPath); - if (analysisSteps.length != 0) { - analysis.addAllSteps(Arrays.asList(analysisSteps)); - } - return analysis; - } - - Map makeResults(List genes) { - return genes.stream().collect(toMap(Gene::getGeneSymbol, gene -> gene)); - } - - void printResults(SampleData sampleData) { - for (Gene gene : sampleData.getGenes()) { - logger.info("{}", gene); - for (VariantEvaluation variantEvaluation : gene.getVariantEvaluations()) { - logger.info("{}", variantEvaluation); - } - } - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepTest.java deleted file mode 100644 index 9826c1b23..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepTest.java +++ /dev/null @@ -1,83 +0,0 @@ -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.KnownVariantFilter; -import de.charite.compbio.exomiser.core.filters.PriorityScoreFilter; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriority; -import de.charite.compbio.exomiser.core.prioritisers.PhivePriority; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import org.junit.Test; - -import java.util.ArrayList; - -import static org.hamcrest.MatcherAssert.assertThat; -import static org.hamcrest.core.Is.is; - -/** - * @author Jules Jacobsen - */ -public class AnalysisStepTest { - - private static final AnalysisStep PHIVE_PRIORITY = new PhivePriority(new ArrayList<>()); - private static final AnalysisStep PRIORITY_SCORE_FILTER = new PriorityScoreFilter(PriorityType.PHIVE_PRIORITY, 0.6f); - private static final AnalysisStep KNOWN_VARIANT_FILTER = new KnownVariantFilter(); - private static final AnalysisStep OMIM_PRIORITY = new OMIMPriority(); - private static final AnalysisStep INHERITANCE_FILTER = new InheritanceFilter(ModeOfInheritance.UNINITIALIZED); - - @Test - public void testIsInheritanceModeDependent_OMIMPriority() { - assertThat(OMIM_PRIORITY.isInheritanceModeDependent(), is(true)); - } - - @Test - public void testIsInheritanceModeDependent_InheritanceModeFilter() { - assertThat(INHERITANCE_FILTER.isInheritanceModeDependent(), is(true)); - } - - @Test - public void testIsInheritanceModeDependent_notInheritanceModeDependant() { - assertThat(KNOWN_VARIANT_FILTER.isInheritanceModeDependent(), is(false)); - } - - @Test - public void testIsOnlyGeneDependent_inheritanceModeDependantGeneFilter() { - assertThat(INHERITANCE_FILTER.isOnlyGeneDependent(), is(false)); - } - - @Test - public void testIsOnlyGeneDependent_inheritanceModeDependantPrioritiser() { - assertThat(OMIM_PRIORITY.isOnlyGeneDependent(), is(false)); - } - - @Test - public void testIsOnlyGeneDependent_variantFilter() { - assertThat(KNOWN_VARIANT_FILTER.isOnlyGeneDependent(), is(false)); - } - - @Test - public void testIsOnlyGeneDependent_otherPrioritiser() { - assertThat(PHIVE_PRIORITY.isOnlyGeneDependent(), is(true)); - } - - @Test - public void testIsOnlyGeneDependent_priorityScoreFilter() { - assertThat(PRIORITY_SCORE_FILTER.isOnlyGeneDependent(), is(true)); - } - - @Test - public void testIsVariantFilter_variantFilter() { - assertThat(KNOWN_VARIANT_FILTER.isVariantFilter(), is(true)); - } - - @Test - public void testIsVariantFilter_geneFilter() { - assertThat(INHERITANCE_FILTER.isVariantFilter(), is(false)); - } - - @Test - public void testIsVariantFilter_prioritiser() { - assertThat(OMIM_PRIORITY.isVariantFilter(), is(false)); - } - -} \ No newline at end of file diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisTest.java deleted file mode 100644 index 0cc7727ce..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisTest.java +++ /dev/null @@ -1,199 +0,0 @@ - -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.filters.EntrezGeneIdFilter; -import de.charite.compbio.exomiser.core.filters.GeneFilter; -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.PassAllVariantEffectsFilter; -import de.charite.compbio.exomiser.core.filters.VariantFilter; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.NoneTypePrioritiser; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; -import de.charite.compbio.exomiser.core.prioritisers.ScoringMode; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.Collections; -import java.util.EnumSet; -import java.util.HashSet; -import java.util.List; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.hasItem; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class AnalysisTest { - - private Analysis instance; - - private SampleData sampleData; - - @Before - public void setUp() { - sampleData = new SampleData(); - instance = new Analysis(); - } - - @Test - public void canSetVcfPathInConstructor() { - Path vcfPath = Paths.get("vcf"); - instance = new Analysis(vcfPath); - assertThat(instance.getVcfPath(), equalTo(vcfPath)); - } - - @Test - public void testCanSetAndGetVcfFilePath() { - Path vcfPath = Paths.get("vcf"); - instance.setVcfPath(vcfPath); - assertThat(instance.getVcfPath(), equalTo(vcfPath)); - } - - @Test - public void testCanSetAndGetPedFilePath() { - Path pedPath = Paths.get("ped"); - instance.setPedPath(pedPath); - assertThat(instance.getPedPath(), equalTo(pedPath)); - } - - @Test - public void testCanGetSampleData() { - assertThat(instance.getSampleData(), equalTo(sampleData)); - } - - @Test - public void modeOfInheritanceDefaultsToUnspecified() { - assertThat(instance.getModeOfInheritance(), equalTo(ModeOfInheritance.UNINITIALIZED)); - } - - @Test - public void testCanMakeAnalysis_specifyModeOfInheritance() { - ModeOfInheritance modeOfInheritance = ModeOfInheritance.AUTOSOMAL_DOMINANT; - instance.setModeOfInheritance(modeOfInheritance); - assertThat(instance.getModeOfInheritance(), equalTo(modeOfInheritance)); - } - - @Test - public void testGeneScoringModeDefaultsToRawScore() { - assertThat(instance.getScoringMode(), equalTo(ScoringMode.RAW_SCORE)); - } - - @Test - public void testGeneScoringModeCanBeSpecified() { - ScoringMode scoringMode = ScoringMode.RANK_BASED; - instance.setScoringMode(scoringMode); - assertThat(instance.getScoringMode(), equalTo(scoringMode)); - } - - @Test - public void analysisModeDefaultsToPassOnly() { - assertThat(instance.getAnalysisMode(), equalTo(AnalysisMode.PASS_ONLY)); - } - - @Test - public void analysisCanSpecifyAlternativeAnalysisMode() { - instance.setAnalysisMode(AnalysisMode.FULL); - assertThat(instance.getAnalysisMode(), equalTo(AnalysisMode.FULL)); - } - - @Test - public void testFrequencySourcesAreEmptyByDefault() { - assertThat(instance.getFrequencySources().isEmpty(), is(true)); - } - - @Test - public void canSpecifyFrequencySources() { - Set sources = EnumSet.allOf(FrequencySource.class); - instance.setFrequencySources(sources); - assertThat(instance.getFrequencySources(), equalTo(sources)); - } - - @Test - public void testPathogenicitySourcesAreEmptyByDefault() { - assertThat(instance.getPathogenicitySources().isEmpty(), is(true)); - } - - @Test - public void canSpecifyPathogenicitySources() { - Set sources = EnumSet.allOf(PathogenicitySource.class); - instance.setPathogenicitySources(sources); - assertThat(instance.getPathogenicitySources(), equalTo(sources)); - } - - @Test - public void testGetAnalysisSteps_ReturnsEmptyListWhenNoStepsHaveBeedAdded() { - List steps = Collections.emptyList(); - assertThat(instance.getAnalysisSteps(), equalTo(steps)); - } - - @Test - public void testCanAddVariantFilterAsAnAnalysisStep() { - VariantFilter variantFilter = new PassAllVariantEffectsFilter(); - instance.addStep(variantFilter); - assertThat(instance.getAnalysisSteps(), hasItem(variantFilter)); - } - - @Test - public void testCanAddGeneFilterAsAnAnalysisStep() { - GeneFilter geneFilter = new InheritanceFilter(ModeOfInheritance.UNINITIALIZED); - instance.addStep(geneFilter); - assertThat(instance.getAnalysisSteps(), hasItem(geneFilter)); - } - - @Test - public void testCanAddPrioritiserAsAnAnalysisStep() { - Prioritiser prioritiser = new NoneTypePrioritiser(); - instance.addStep(prioritiser); - assertThat(instance.getAnalysisSteps(), hasItem(prioritiser)); - } - - @Test - public void testGetAnalysisSteps_ReturnsListOfStepsAdded() { - List steps = new ArrayList<>(); - VariantFilter geneIdFilter = new EntrezGeneIdFilter(new HashSet<>()); - Prioritiser noneType = new NoneTypePrioritiser(); - GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.UNINITIALIZED); - VariantFilter targetFilter = new PassAllVariantEffectsFilter(); - - steps.add(geneIdFilter); - steps.add(noneType); - steps.add(inheritanceFilter); - steps.add(targetFilter); - - instance.addStep(geneIdFilter); - instance.addStep(noneType); - instance.addStep(inheritanceFilter); - instance.addStep(targetFilter); - - assertThat(instance.getAnalysisSteps(), equalTo(steps)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/PassOnlyAnalysisRunnerTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/PassOnlyAnalysisRunnerTest.java deleted file mode 100644 index 3e0428cd3..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/PassOnlyAnalysisRunnerTest.java +++ /dev/null @@ -1,356 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.hasItem; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.MatcherAssert.assertThat; - -import java.util.HashMap; -import java.util.Map; - -import org.junit.Ignore; -import org.junit.Before; -import org.junit.Test; - -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.filters.GeneFilter; -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.IntervalFilter; -import de.charite.compbio.exomiser.core.filters.PriorityScoreFilter; -import de.charite.compbio.exomiser.core.filters.QualityFilter; -import de.charite.compbio.exomiser.core.filters.VariantFilter; -import de.charite.compbio.exomiser.core.model.FilterStatus; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.MockPrioritiser; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; - -/** - * @author Jules Jacobsen - */ -public class PassOnlyAnalysisRunnerTest extends AnalysisRunnerTestBase { - - private PassOnlyAnalysisRunner instance; - - @Before - public void setUp() { - instance = new PassOnlyAnalysisRunner(sampleDataFactory, stubDataService); - } - - @Test - public void testRunAnalysis_NoFiltersNoPrioritisers() { - Analysis analysis = makeAnalysis(vcfPath); - - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - for (Gene gene : sampleData.getGenes()) { - assertThat(gene.passedFilters(), is(true)); - for (VariantEvaluation variantEvaluation : gene.getVariantEvaluations()) { - assertThat(variantEvaluation.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); - } - } - } - - @Test - public void testRunAnalysis_VariantFilterOnly_OneVariantPasses() { - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - - Analysis analysis = makeAnalysis(vcfPath, intervalFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(1)); - - Gene passedGene = sampleData.getGenes().get(0); - assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); - assertThat(passedGene.getNumberOfVariants(), equalTo(1)); - } - - @Test - public void testRunAnalysis_TwoVariantFilters_AllVariantsFail() { - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - VariantFilter qualityFilter = new QualityFilter(9999999f); - - Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().isEmpty(), is(true)); - assertThat(sampleData.getVariantEvaluations().isEmpty(), is(true)); - } - - @Test - public void testRunAnalysis_TwoVariantFiltersOnePrioritiser() { - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - VariantFilter qualityFilter = new QualityFilter(120); - Map hiPhiveGeneScores = new HashMap<>(); - hiPhiveGeneScores.put("GNRHR2", 0.75f); - hiPhiveGeneScores.put("RBM8A", 0.65f); - Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); - - Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter, mockHiPhivePrioritiser); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(1)); - - Map results = makeResults(sampleData.getGenes()); - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(true)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(1)); - assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); - - VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); - assertThat(rbm8Variant1.passedFilters(), is(true)); - assertThat(rbm8Variant1.passedFilter(FilterType.INTERVAL_FILTER), is(true)); - assertThat(rbm8Variant1.passedFilter(FilterType.QUALITY_FILTER), is(true)); - } - - @Test - public void testRunAnalysis_TwoVariantFiltersOnePrioritiserRecessiveInheritanceFilter() { - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - VariantFilter qualityFilter = new QualityFilter(120); - Map hiPhiveGeneScores = new HashMap<>(); - hiPhiveGeneScores.put("GNRHR2", 0.75f); - hiPhiveGeneScores.put("RBM8A", 0.65f); - Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); - GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter, mockHiPhivePrioritiser, inheritanceFilter); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(1)); - - Map results = makeResults(sampleData.getGenes()); - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(true)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(1)); - assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); - - VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(0); - assertThat(rbm8Variant2.passedFilters(), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); - } - - @Test - public void testRunAnalysis_PrioritiserAndPriorityScoreFilterOnly() { - Float desiredPrioritiserScore = 0.9f; - Map geneSymbolPrioritiserScores = new HashMap<>(); - geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); - - PriorityType prioritiserTypeToMock = PriorityType.HIPHIVE_PRIORITY; - Prioritiser prioritiser = new MockPrioritiser(prioritiserTypeToMock, geneSymbolPrioritiserScores); - GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); - - Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(1)); - - Map results = makeResults(sampleData.getGenes()); - - Gene passedGene = results.get("RBM8A"); - assertThat(passedGene.passedFilters(), is(true)); - assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); - assertThat(passedGene.getPriorityScore(), equalTo(desiredPrioritiserScore)); - } - - @Test - public void testRunAnalysis_PrioritiserPriorityScoreFilterVariantFilter() { - Float desiredPrioritiserScore = 0.9f; - Map geneSymbolPrioritiserScores = new HashMap<>(); - geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); - - PriorityType prioritiserTypeToMock = PriorityType.HIPHIVE_PRIORITY; - Prioritiser prioritiser = new MockPrioritiser(prioritiserTypeToMock, geneSymbolPrioritiserScores); - GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - - Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter, intervalFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(1)); - - Map results = makeResults(sampleData.getGenes()); - - Gene passedGene = results.get("RBM8A"); - assertThat(passedGene.passedFilters(), is(true)); - assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); - assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); - assertThat(passedGene.getPriorityScore(), equalTo(desiredPrioritiserScore)); - assertThat(passedGene.getNumberOfVariants(), equalTo(1)); - - VariantEvaluation rbm8Variant2 = passedGene.getVariantEvaluations().get(0); - assertThat(rbm8Variant2.passedFilters(), is(true)); - assertThat(rbm8Variant2.getChromosome(), equalTo(1)); - assertThat(rbm8Variant2.getPosition(), equalTo(145508800)); - assertThat(rbm8Variant2.getGeneSymbol(), equalTo(passedGene.getGeneSymbol())); - } - - @Test - public void testRunAnalysis_VariantFilterPrioritiserPriorityScoreFilterVariantFilter() { - Float desiredPrioritiserScore = 0.9f; - Map geneSymbolPrioritiserScores = new HashMap<>(); - geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); - - VariantFilter qualityFilter = new QualityFilter(120); - PriorityType prioritiserTypeToMock = PriorityType.HIPHIVE_PRIORITY; - Prioritiser prioritiser = new MockPrioritiser(prioritiserTypeToMock, geneSymbolPrioritiserScores); - GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - Analysis analysis = makeAnalysis(vcfPath, qualityFilter, prioritiser, priorityScoreFilter, intervalFilter, inheritanceFilter); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(1)); - - Map results = makeResults(sampleData.getGenes()); - - Gene passedGene = results.get("RBM8A"); - assertThat(passedGene.passedFilters(), is(true)); - assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); - assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); - assertThat(passedGene.getPriorityScore(), equalTo(desiredPrioritiserScore)); - assertThat(passedGene.getNumberOfVariants(), equalTo(1)); - - VariantEvaluation rbm8Variant2 = passedGene.getVariantEvaluations().get(0); - assertThat(rbm8Variant2.passedFilters(), is(true)); - assertThat(rbm8Variant2.getChromosome(), equalTo(1)); - assertThat(rbm8Variant2.getPosition(), equalTo(145508800)); - assertThat(rbm8Variant2.getGeneSymbol(), equalTo(passedGene.getGeneSymbol())); - assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); - } - - @Test - public void testRunAnalysis_autosomalDominantTrioDeNovoInheritanceFilter() { - VariantFilter qualityFilter = new QualityFilter(5); - InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT); - Analysis analysis = makeAnalysis(inheritanceFilterVCFPath, qualityFilter, inheritanceFilter); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT); - analysis.setPedPath(childAffectedPedPath); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(1)); - - Map results = makeResults(sampleData.getGenes()); - Gene passedGene = results.get("GNRHR2"); - assertThat(passedGene.passedFilters(), is(true)); - assertThat(passedGene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(passedGene.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - assertThat(passedGene.getEntrezGeneID(), equalTo(114814)); - assertThat(passedGene.getGeneSymbol(), equalTo("GNRHR2")); - assertThat(passedGene.getNumberOfVariants(), equalTo(1)); - assertThat(passedGene.getVariantEvaluations().get(0).getPosition(), equalTo(145510000)); - - } - - @Test - public void testRunAnalysis_autosomalDominantTrioSharedInheritanceFilter() { - VariantFilter qualityFilter = new QualityFilter(5); - InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT); - Analysis analysis = makeAnalysis(inheritanceFilterVCFPath, qualityFilter, inheritanceFilter); - analysis.setPedPath(twoAffectedPedPath); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(1)); - - Map results = makeResults(sampleData.getGenes()); - Gene passedGene = results.get("RBM8A"); - assertThat(passedGene.passedFilters(), is(true)); - assertThat(passedGene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(passedGene.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); - assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); - assertThat(passedGene.getNumberOfVariants(), equalTo(1)); - assertThat(passedGene.getVariantEvaluations().get(0).getPosition(), equalTo(123256214)); - - } - - @Test - public void testRunAnalysis_autosomalRecessiveTrioInheritanceFilter() { - VariantFilter qualityFilter = new QualityFilter(5); - InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - Analysis analysis = makeAnalysis(inheritanceFilterVCFPath, qualityFilter, inheritanceFilter); - analysis.setPedPath(childAffectedPedPath); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); - //CompoundHeterozygous - Gene passedGene = results.get("RBM8A"); - assertThat(passedGene.passedFilters(), is(true)); - assertThat(passedGene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - assertThat(passedGene.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); - assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); - assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); - assertThat(passedGene.getNumberOfVariants(), equalTo(2)); - assertThat(passedGene.getVariantEvaluations().get(0).getPosition(), equalTo(123256214)); - assertThat(passedGene.getVariantEvaluations().get(1).getPosition(), equalTo(145508800)); - - //Homozygous - passedGene = results.get("FGFR2"); - assertThat(passedGene.passedFilters(), is(true)); - assertThat(passedGene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - assertThat(passedGene.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); - assertThat(passedGene.getEntrezGeneID(), equalTo(2263)); - assertThat(passedGene.getGeneSymbol(), equalTo("FGFR2")); - assertThat(passedGene.getNumberOfVariants(), equalTo(1)); - assertThat(passedGene.getVariantEvaluations().get(0).getPosition(), equalTo(123239370)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SettingsParserTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SettingsParserTest.java deleted file mode 100644 index d3fa420cb..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SettingsParserTest.java +++ /dev/null @@ -1,210 +0,0 @@ - -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import static de.charite.compbio.exomiser.core.analysis.SettingsParser.NON_EXONIC_VARIANT_EFFECTS; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.factories.VariantDataServiceStub; -import de.charite.compbio.exomiser.core.filters.EntrezGeneIdFilter; -import de.charite.compbio.exomiser.core.filters.FrequencyFilter; -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.IntervalFilter; -import de.charite.compbio.exomiser.core.filters.KnownVariantFilter; -import de.charite.compbio.exomiser.core.filters.PathogenicityFilter; -import de.charite.compbio.exomiser.core.filters.QualityFilter; -import de.charite.compbio.exomiser.core.filters.VariantEffectFilter; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.NoneTypePrioritiser; -import de.charite.compbio.exomiser.core.prioritisers.NoneTypePriorityFactoryStub; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriority; -import de.charite.compbio.exomiser.core.prioritisers.PriorityFactory; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.EnumSet; -import java.util.HashSet; -import java.util.List; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.Test; - -/** -* -* @author Jules Jacobsen -*/ -public class SettingsParserTest { - - private SettingsParser instance; - - private SettingsBuilder settingsBuilder; - private Analysis analysis; - - private final ModeOfInheritance autosomal_dominant = ModeOfInheritance.AUTOSOMAL_DOMINANT; - private final GeneticInterval interval = new GeneticInterval(2, 12345, 67890); - - @Before - public void setUp() { - PriorityFactory stubPriorityFactory = new NoneTypePriorityFactoryStub(); - instance = new SettingsParser(stubPriorityFactory, new VariantDataServiceStub()); - - settingsBuilder = new SettingsBuilder().vcfFilePath(Paths.get("vcf")); - analysis = new Analysis(); - analysis.setAnalysisMode(AnalysisMode.SPARSE); - analysis.setVcfPath(Paths.get("vcf")); - analysis.setFrequencySources(FrequencySource.ALL_EXTERNAL_FREQ_SOURCES); - analysis.setPathogenicitySources(EnumSet.of(PathogenicitySource.MUTATION_TASTER, PathogenicitySource.POLYPHEN, PathogenicitySource.SIFT)); - } - - private void addDefaultVariantFilters(Analysis analysis) { - analysis.addStep(new VariantEffectFilter(NON_EXONIC_VARIANT_EFFECTS)); - analysis.addStep(new FrequencyFilter(100f)); - analysis.addStep(new PathogenicityFilter(false)); - } - - @Test - public void testDefaultAnalysisModeIsSparse() { - Analysis result = instance.parse(settingsBuilder.build()); - assertThat(result.getAnalysisMode(), equalTo(AnalysisMode.SPARSE)); - } - - @Test - public void testCanSpecifyNotFullAnalysisMode() { - Analysis result = instance.parse(settingsBuilder.runFullAnalysis(false).build()); - assertThat(result.getAnalysisMode(), equalTo(AnalysisMode.SPARSE)); - } - - @Test - public void testCanSpecifyFullAnalysisMode() { - Analysis result = instance.parse(settingsBuilder.runFullAnalysis(true).build()); - assertThat(result.getAnalysisMode(), equalTo(AnalysisMode.FULL)); - } - - @Test - public void testDefaultFrequencyDataSources() { - Analysis result = instance.parse(settingsBuilder.build()); - assertThat(result.getFrequencySources(), equalTo(analysis.getFrequencySources())); - } - - @Test - public void testDefaultPathogenicityDataSources() { - Analysis result = instance.parse(settingsBuilder.build()); - assertThat(result.getPathogenicitySources(), equalTo(analysis.getPathogenicitySources())); - } - - @Test - public void testDefaultAnalysisIsTargetFrequencyAndPathogenicityFilters() { - Settings settings = settingsBuilder.build(); - - addDefaultVariantFilters(analysis); - - Analysis result = instance.parse(settings); - assertThat(result, equalTo(analysis)); - } - - @Test - public void testSpecifyingInheritanceModeAddsAnInheritanceFilter() { - - Settings settings = settingsBuilder - .modeOfInheritance(autosomal_dominant).build(); - - addDefaultVariantFilters(analysis); - analysis.setModeOfInheritance(autosomal_dominant); - analysis.addStep(new InheritanceFilter(autosomal_dominant)); - - Analysis result = instance.parse(settings); - assertThat(result, equalTo(analysis)); - - } - - @Test - public void testCanMakeAllTypesOfFilter() { - //make a new Settings object specifying a Pathogenicity, Frequency, Quality and Interval filters - Set geneIdsToKeep = new HashSet<>(); - geneIdsToKeep.add(1); - - Settings settings = settingsBuilder - .modeOfInheritance(autosomal_dominant) - .genesToKeepList(geneIdsToKeep) - .removePathFilterCutOff(true) - .removeKnownVariants(true) - .maximumFrequency(0.25f) - .minimumQuality(2f) - .geneticInterval(interval) - .build(); - - analysis.addStep(new EntrezGeneIdFilter(geneIdsToKeep)); - analysis.addStep(new IntervalFilter(interval)); - analysis.addStep(new VariantEffectFilter(NON_EXONIC_VARIANT_EFFECTS)); - analysis.addStep(new QualityFilter(2f)); - analysis.addStep(new KnownVariantFilter()); - analysis.addStep(new FrequencyFilter(0.25f)); - analysis.addStep(new PathogenicityFilter(true)); - analysis.addStep(new InheritanceFilter(autosomal_dominant)); - analysis.setModeOfInheritance(autosomal_dominant); - - Analysis result = instance.parse(settings); - assertThat(result, equalTo(analysis)); - } - - @Test - public void testSpecifyingOmimPrioritiserOnlyAddsOmimPrioritiser() { - - Settings settings = settingsBuilder - .usePrioritiser(PriorityType.OMIM_PRIORITY) - .build(); - - addDefaultVariantFilters(analysis); - analysis.addStep(new OMIMPriority()); - - Analysis result = instance.parse(settings); - assertThat(result, equalTo(analysis)); - - } - - @Test - public void testSpecifyingPrioritiserAddsAnOmimAndTheSpecifiedPrioritiser() { - - List hpoIds = new ArrayList<>(); - hpoIds.add("HP:000001"); - hpoIds.add("HP:000002"); - hpoIds.add("HP:000003"); - - Settings settings = settingsBuilder - .usePrioritiser(PriorityType.PHIVE_PRIORITY) - .hpoIdList(hpoIds) - .build(); - - analysis.setHpoIds(hpoIds); - addDefaultVariantFilters(analysis); - analysis.addStep(new OMIMPriority()); - analysis.addStep(new NoneTypePrioritiser()); - System.out.println(analysis); - - Analysis result = instance.parse(settings); - assertThat(result, equalTo(analysis)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SparseAnalysisRunnerTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SparseAnalysisRunnerTest.java deleted file mode 100644 index 7c78c1a73..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SparseAnalysisRunnerTest.java +++ /dev/null @@ -1,361 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.filters.*; -import de.charite.compbio.exomiser.core.model.FilterStatus; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.MockPrioritiser; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.EnumSet; -import java.util.HashMap; -import java.util.Map; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.hasItem; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; - - -/** - * @author Jules Jacobsen - */ -public class SparseAnalysisRunnerTest extends AnalysisRunnerTestBase { - - private SparseAnalysisRunner instance; - - @Before - public void setUp() { - instance = new SparseAnalysisRunner(sampleDataFactory, stubDataService); - } - - @Test - public void testRunAnalysis_NoFiltersNoPrioritisers() { - Analysis analysis = makeAnalysis(vcfPath); - - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - for (Gene gene : sampleData.getGenes()) { - assertThat(gene.passedFilters(), is(true)); - for (VariantEvaluation variantEvaluation : gene.getVariantEvaluations()) { - assertThat(variantEvaluation.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); - } - } - } - - @Test - public void testRunAnalysis_VariantFilterOnly_OneVariantPasses() { - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - - Analysis analysis = makeAnalysis(vcfPath, intervalFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); - - Gene gnrh2 = results.get("GNRHR2"); - assertThat(gnrh2.passedFilters(), is(false)); - assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(true)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); - assertThat(rbm8a.getPassedVariantEvaluations().size(), equalTo(1)); - - VariantEvaluation variantEvaluation = rbm8a.getPassedVariantEvaluations().get(0); - assertThat(variantEvaluation.getChromosome(), equalTo(1)); - assertThat(variantEvaluation.getPosition(), equalTo(145508800)); - - } - - @Test - public void testRunAnalysis_TwoVariantFilters_AllVariantsFail_VariantsShouldContainOnlyOneFailedFilterResult() { - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - VariantFilter qualityFilter = new QualityFilter(9999999f); - - Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); - - Gene gnrh2 = results.get("GNRHR2"); - assertThat(gnrh2.passedFilters(), is(false)); - assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); - VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); - assertThat(gnrh2Variant1.passedFilters(), is(false)); - assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); - - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(false)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); - assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(true)); - - VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); - assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); - - VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); - assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); - assertThat(rbm8Variant2.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.QUALITY_FILTER))); - } - - @Test - public void testRunAnalysis_TwoVariantFiltersOnePrioritiser_VariantsShouldContainOnlyOneFailedFilterResult() { - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - VariantFilter qualityFilter = new QualityFilter(120); - Map hiPhiveGeneScores = new HashMap<>(); - hiPhiveGeneScores.put("GNRHR2", 0.75f); - hiPhiveGeneScores.put("RBM8A", 0.65f); - Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); - GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter, mockHiPhivePrioritiser, inheritanceFilter); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); - - Gene gnrh2 = results.get("GNRHR2"); - assertThat(gnrh2.passedFilters(), is(false)); - assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); - VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); - assertThat(gnrh2Variant1.passedFilters(), is(false)); - assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(true)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); - assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); - - VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); - assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER, FilterType.INHERITANCE_FILTER))); - - VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); - assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); - } - - @Test - public void testRunAnalysis_TwoVariantFiltersOnePrioritiserRecessiveInheritanceFilter_VariantsShouldContainOnlyOneFailedFilterResult() { - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - VariantFilter qualityFilter = new QualityFilter(120); - Map hiPhiveGeneScores = new HashMap<>(); - hiPhiveGeneScores.put("GNRHR2", 0.75f); - hiPhiveGeneScores.put("RBM8A", 0.65f); - Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); - GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter, mockHiPhivePrioritiser, inheritanceFilter); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); - - Gene gnrh2 = results.get("GNRHR2"); - assertThat(gnrh2.passedFilters(), is(false)); - assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); - VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); - assertThat(gnrh2Variant1.passedFilters(), is(false)); - assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(true)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); - assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); - - VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); - assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER, FilterType.INHERITANCE_FILTER))); - - VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); - assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); - } - - @Test - public void testRunAnalysis_PrioritiserAndPriorityScoreFilterOnly() { - Float desiredPrioritiserScore = 0.9f; - Map geneSymbolPrioritiserScores = new HashMap<>(); - geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); - - PriorityType prioritiserTypeToMock = PriorityType.HIPHIVE_PRIORITY; - Prioritiser prioritiser = new MockPrioritiser(prioritiserTypeToMock, geneSymbolPrioritiserScores); - GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); - - Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); - - Gene gnrh2 = results.get("GNRHR2"); - assertThat(gnrh2.passedFilters(), is(false)); - assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); - VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); - assertThat(gnrh2Variant1.passedFilters(), is(false)); - assertThat(gnrh2Variant1.getFilterStatus(), equalTo(FilterStatus.FAILED)); - assertThat(gnrh2Variant1.getFailedFilterTypes(), hasItem(FilterType.PRIORITY_SCORE_FILTER)); - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(true)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); - assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); - assertThat(rbm8a.getEntrezGeneID(), equalTo(9939)); - assertThat(rbm8a.getPriorityScore(), equalTo(desiredPrioritiserScore)); - - VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); - assertThat(rbm8Variant1.passedFilters(), is(true)); - assertThat(rbm8Variant1.getFilterStatus(), equalTo(FilterStatus.PASSED)); - assertThat(rbm8Variant1.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(true)); - - VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); - assertThat(rbm8Variant2.passedFilters(), is(true)); - assertThat(rbm8Variant2.getFilterStatus(), equalTo(FilterStatus.PASSED)); - assertThat(rbm8Variant2.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(true)); - } - - @Test - public void testRunAnalysis_PrioritiserPriorityScoreFilterVariantFilter() { - Float desiredPrioritiserScore = 0.9f; - Map geneSymbolPrioritiserScores = new HashMap<>(); - geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); - - Prioritiser prioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, geneSymbolPrioritiserScores); - GeneFilter priorityScoreFilter = new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, desiredPrioritiserScore - 0.1f); - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - - Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter, intervalFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - // fails with my new code as it reassigns 1:g.145510000G>A from GNRHR2 to RBM8A as both are annotated and RBM8A scores better due to above code - // note that the GNRH2 is actually a missense variant and RBM8A is a 3UTR variant so prob not that sensible! - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); - - Gene gnrh2 = results.get("GNRHR2"); - assertThat(gnrh2.passedFilters(), is(false)); - assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); - VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); - assertThat(gnrh2Variant1.passedFilters(), is(false)); - assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER, FilterType.PRIORITY_SCORE_FILTER))); - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(true)); - assertThat(rbm8a.getEntrezGeneID(), equalTo(9939)); - assertThat(rbm8a.getGeneSymbol(), equalTo("RBM8A")); - assertThat(rbm8a.getPriorityScore(), equalTo(desiredPrioritiserScore)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); - - VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); - assertThat(rbm8Variant1.passedFilters(), is(false)); - assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); - - VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); - assertThat(rbm8Variant2.passedFilters(), is(true)); - assertThat(rbm8Variant2.getChromosome(), equalTo(1)); - assertThat(rbm8Variant2.getPosition(), equalTo(145508800)); - assertThat(rbm8Variant2.getGeneSymbol(), equalTo(rbm8a.getGeneSymbol())); - } - - @Test - public void testRunAnalysis_VariantFilterPrioritiserPriorityScoreFilterVariantFilter() { - Float desiredPrioritiserScore = 0.9f; - Map geneSymbolPrioritiserScores = new HashMap<>(); - geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); - - VariantFilter qualityFilter = new QualityFilter(120); - Prioritiser prioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, geneSymbolPrioritiserScores); - GeneFilter priorityScoreFilter = new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, desiredPrioritiserScore - 0.1f); - VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); - InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - Analysis analysis = makeAnalysis(vcfPath, qualityFilter, prioritiser, priorityScoreFilter, intervalFilter, inheritanceFilter); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.runAnalysis(analysis); - - //TODO: remove all this repetitive cruft into common method - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); - - Gene gnrh2 = results.get("GNRHR2"); - assertThat(gnrh2.passedFilters(), is(false)); - assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); - - VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); - assertThat(gnrh2Variant1.passedFilters(), is(false)); - assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.PRIORITY_SCORE_FILTER))); - - Gene rbm8a = results.get("RBM8A"); - assertThat(rbm8a.passedFilters(), is(true)); - assertThat(rbm8a.getEntrezGeneID(), equalTo(9939)); - assertThat(rbm8a.getGeneSymbol(), equalTo("RBM8A")); - assertThat(rbm8a.getPriorityScore(), equalTo(desiredPrioritiserScore)); - assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); - - VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); - assertThat(rbm8Variant1.passedFilters(), is(false)); - assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.QUALITY_FILTER, FilterType.INHERITANCE_FILTER))); - - VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); - assertThat(rbm8Variant2.passedFilters(), is(true)); - assertThat(rbm8Variant2.getChromosome(), equalTo(1)); - assertThat(rbm8Variant2.getPosition(), equalTo(145508800)); - assertThat(rbm8Variant2.getGeneSymbol(), equalTo(rbm8a.getGeneSymbol())); - assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); - assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/TestAnalysisBuilder.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/TestAnalysisBuilder.java deleted file mode 100644 index 745c96e98..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/TestAnalysisBuilder.java +++ /dev/null @@ -1,33 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.model.SampleData; - -/** - * Class to help build Analysis objects for other test classes outside the analysis package. - * - * @author Jules Jacobsen - */ -public class TestAnalysisBuilder { - - private final Analysis analysis = new Analysis(); - - public Analysis build() { - return analysis; - } - - public TestAnalysisBuilder sampleData(SampleData sampleData) { - analysis.setSampleData(sampleData); - return this; - } - - public TestAnalysisBuilder analysisMode(AnalysisMode analysisMode) { - analysis.setAnalysisMode(analysisMode); - return this; - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/ChromosomalRegionIndexTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/ChromosomalRegionIndexTest.java deleted file mode 100644 index 54194a8c5..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/ChromosomalRegionIndexTest.java +++ /dev/null @@ -1,138 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.analysis.util; - -import de.charite.compbio.exomiser.core.model.SimpleVariantCoordinates; -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import de.charite.compbio.exomiser.core.model.VariantCoordinates; -import org.junit.Test; - -import java.util.Arrays; -import java.util.Collections; -import java.util.HashMap; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.*; - -/** - * @author Jules Jacobsen - */ -public class ChromosomalRegionIndexTest { - - private ChromosomalRegionIndex instance; - - private final VariantCoordinates variant = new SimpleVariantCoordinates(1, 50, "A", "T"); - - private void createInstance(TopologicalDomain... tad) { - instance = new ChromosomalRegionIndex<>(Arrays.asList(tad)); - } - - @Test - public void testGetTadsContainingVariant_SingleTad() { - TopologicalDomain tad = new TopologicalDomain(1, 1, 100, new HashMap<>()); - createInstance(tad); - - assertThat(instance.getRegionsContainingVariant(variant), equalTo(Arrays.asList(tad))); - } - - @Test - public void testGetTadsContainingVariant_SingleTadVariantNotInTad() { - TopologicalDomain tad = new TopologicalDomain(1, 1, 10, new HashMap<>()); - createInstance(tad); - - assertThat(instance.getRegionsContainingVariant(variant), equalTo(Collections.emptyList())); - } - - @Test - public void testGetTadsContainingVariant_SingleTadVariantNotInChromosomeIndex() { - TopologicalDomain tad = new TopologicalDomain(1, 1, 10, new HashMap<>()); - createInstance(tad); - - assertThat(instance.getRegionsContainingVariant(new SimpleVariantCoordinates(100, 50, "A", "T")), equalTo(Collections.emptyList())); - } - - @Test - public void testGetTadsContainingPosition_PositionOneBeforeStartOfRegion() { - TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); - createInstance(tad); - - assertThat(instance.getRegionsOverlappingPosition(1, 9), equalTo(Collections.emptyList())); - } - - @Test - public void testGetTadsContainingPosition_PositionAtStartOfRegion() { - TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); - createInstance(tad); - - assertThat(instance.getRegionsOverlappingPosition(1, 10), equalTo(Arrays.asList(tad))); - } - - @Test - public void testGetTadsContainingPosition_PositionMiddleOfRegion() { - TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); - createInstance(tad); - - assertThat(instance.getRegionsOverlappingPosition(1, 11), equalTo(Arrays.asList(tad))); - } - - @Test - public void testGetTadsContainingPosition_PositionAtEndOfRegion() { - TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); - createInstance(tad); - - assertThat(instance.getRegionsOverlappingPosition(1, 12), equalTo(Arrays.asList(tad))); - } - - @Test - public void testGetTadsContainingPosition_PositionOneAfterEndOfRegion() { - TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); - createInstance(tad); - - assertThat(instance.getRegionsOverlappingPosition(1, 13), equalTo(Collections.emptyList())); - } - - @Test - public void testGetTadsContainingVariant_TwoNonOverlappingTads() { - TopologicalDomain tad = new TopologicalDomain(1, 1, 100, new HashMap<>()); - TopologicalDomain tad1 = new TopologicalDomain(2, 200, 300, new HashMap<>()); - createInstance(tad, tad1); - - assertThat(instance.getRegionsContainingVariant(variant), equalTo(Arrays.asList(tad))); - } - - @Test - public void testGetTadsContainingVariant_TwoOverlappingTadsVariantInBoth() { - TopologicalDomain tad = new TopologicalDomain(1, 1, 100, new HashMap<>()); - TopologicalDomain tad1 = new TopologicalDomain(1, 25, 75, new HashMap<>()); - createInstance(tad, tad1); - - assertThat(instance.getRegionsContainingVariant(variant), equalTo(Arrays.asList(tad, tad1))); - } - - @Test - public void testGetTadsContainingVariant_TwoOverlappingTadsVariantInOne() { - TopologicalDomain tad = new TopologicalDomain(1, 1, 100, new HashMap<>()); - TopologicalDomain tad1 = new TopologicalDomain(1, 75, 200, new HashMap<>()); - createInstance(tad, tad1); - - assertThat(instance.getRegionsContainingVariant(variant), equalTo(Arrays.asList(tad))); - } - -} \ No newline at end of file diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/InheritanceModeAnalyserTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/InheritanceModeAnalyserTest.java deleted file mode 100644 index 466e98788..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/InheritanceModeAnalyserTest.java +++ /dev/null @@ -1,613 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis.util; - -import com.google.common.collect.ImmutableList; -import de.charite.compbio.exomiser.core.factories.PedigreeFactory; -import de.charite.compbio.exomiser.core.filters.FailFilterResult; -import de.charite.compbio.exomiser.core.filters.FilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.filters.PassFilterResult; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.pedigree.*; - -import static java.util.stream.Collectors.toList; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.hasItem; -import static org.hamcrest.CoreMatchers.is; - -import htsjdk.variant.variantcontext.*; -import htsjdk.variant.variantcontext.Genotype; -import htsjdk.variant.vcf.VCFHeader; -import org.hamcrest.CoreMatchers; -import org.junit.Before; -import org.junit.Ignore; -import org.junit.Test; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; - -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class InheritanceModeAnalyserTest { - - @Before - public void setUp() { - - } - - private VariantEvaluation filteredVariant(int chr, int pos, String ref, String alt, FilterResult filterResult) { - VariantEvaluation variant = new VariantEvaluation.VariantBuilder(chr, pos, ref, alt).build(); - variant.addFilterResult(filterResult); - return variant; - } - - private VariantEvaluation filteredVariant(int chr, int pos, String ref, String alt, FilterResult filterResult, VariantContext variantContext) { - List altAlleles = variantContext.getAlternateAlleles(); - int altAlleleId = 0; - for (int i = 0; i < altAlleles.size(); i++) { - if (alt.equalsIgnoreCase(altAlleles.get(i).getBaseString())) { - altAlleleId = i; - } - } - - VariantEvaluation variant = new VariantEvaluation.VariantBuilder(chr, pos, ref, alt) - .altAlleleId(altAlleleId) - .variantContext(variantContext) - .build(); - variant.addFilterResult(filterResult); - return variant; - } - - private List buildAlleles(String ref, String... alts) { - Allele refAllele = Allele.create(ref, true); - - List altAlleles = Arrays.asList(alts).stream().map(Allele::create).collect(toList()); - List alleles = new ArrayList<>(); - alleles.add(refAllele); - alleles.addAll(altAlleles); - return alleles; - } - - private Genotype buildSampleGenotype(String sampleName, Allele ref, Allele alt) { - GenotypeBuilder gtBuilder = new GenotypeBuilder(sampleName).noAttributes().alleles(Arrays.asList(ref, alt)).phased(true); - return gtBuilder.make(); - } - - private VariantContext buildVariantContext(int chr, int pos, List alleles, Genotype... genotypes) { - Allele refAllele = alleles.get(0); - - VariantContextBuilder vcBuilder = new VariantContextBuilder(); - vcBuilder.loc(Integer.toString(chr), pos, (pos - 1) + refAllele.length()); - vcBuilder.alleles(alleles); - vcBuilder.genotypes(genotypes); - //yeah I know, it's a zero - vcBuilder.log10PError(-0.1 * 0); - - return vcBuilder.make(); - } - - private Pedigree buildPedigree(PedPerson... people) { - ImmutableList.Builder individualBuilder = new ImmutableList.Builder(); - individualBuilder.addAll(Arrays.asList(people)); - - PedFileContents pedFileContents = new PedFileContents(new ImmutableList.Builder().build(), individualBuilder.build()); - - return buildPedigreeFromPedFile(pedFileContents); - - } - - private Pedigree buildPedigreeFromPedFile(PedFileContents pedFileContents) { - final String name = pedFileContents.getIndividuals().get(0).getPedigree(); - try { - return new Pedigree(name, new PedigreeExtractor(name, pedFileContents).run()); - } catch (PedParseException e) { - throw new RuntimeException(e); - } - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_NoVariants() { - Gene gene = new Gene("ABC", 123); - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.UNINITIALIZED); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_NoPassedVariants() { - Gene gene = new Gene("ABC", 123); - gene.addVariant(filteredVariant(1, 1 , "A", "T", new FailFilterResult(FilterType.FREQUENCY_FILTER))); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.UNINITIALIZED); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_OnePassedVariant_HET() { - List alleles = buildAlleles("A", "T"); - // build Genotype - Genotype genotype = buildSampleGenotype("Adam", alleles.get(0), alleles.get(1)); - assertThat(genotype.getType(), equalTo(GenotypeType.HET)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, genotype); - System.out.println("Built variant context " + variantContext); - - Gene gene = new Gene("ABC", 123); - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); - - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_DOMINANT); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_OnePassedVariant_HOM_REF_ShouldBeIncompatibleWith_RECESIVE() { - List alleles = buildAlleles("A", "T"); - - //HomRef 0/0 or 0|0 variants really shouldn't be causing rare diseases so we need to ensure these are removed - Genotype genotype = buildSampleGenotype("Adam", alleles.get(0), alleles.get(0)); - assertThat(genotype.getType(), equalTo(GenotypeType.HOM_REF)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, genotype); - System.out.println("Built variant context " + variantContext); - - Gene gene = new Gene("ABC", 123); - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_OnePassedVariant_HOM_REF_ShouldBeIncompatibleWith_DOMINANT() { - List alleles = buildAlleles("A", "T"); - - //HomRef 0/0 or 0|0 variants really shouldn't be causing rare diseases so we need to ensure these are removed - Genotype genotype = buildSampleGenotype("Adam", alleles.get(0), alleles.get(0)); - assertThat(genotype.getType(), equalTo(GenotypeType.HOM_REF)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, genotype); - System.out.println("Built variant context " + variantContext); - - Gene gene = new Gene("ABC", 123); - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_DOMINANT); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> assertThat(variant.getInheritanceModes().isEmpty(), is(true))); - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_OnePassedVariant_HOM_VAR() { - List alleles = buildAlleles("A", "T"); - //HOM_ALT - Genotype genotype = buildSampleGenotype("Adam", alleles.get(1), alleles.get(1)); - assertThat(genotype.getType(), equalTo(GenotypeType.HOM_VAR)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, genotype); - System.out.println("Built variant context " + variantContext); - - Gene gene = new Gene("ABC", 123); - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_DOMINANT); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> assertThat(variant.getInheritanceModes().isEmpty(), is(true))); - } - - @Test - public void testAnalyseInheritanceModes_MultiSample_OnePassedVariant_HOM_VAR_shouldBeCompatibelWith_RECESSIVE() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T"); - // build Genotype - //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases - Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(1)); - assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); - - Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); - assertThat(mother.getType(), equalTo(GenotypeType.HET)); - - Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); - assertThat(father.getType(), equalTo(GenotypeType.HET)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); - PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); - PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); - Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE))); - } - - @Test - public void testAnalyseInheritanceModes_MultiSample_OnePassedVariant_HOM_REF_shouldNotBeCompatibleWith_AR() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T"); - // build Genotype - //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases - Genotype proband = buildSampleGenotype("Cain", alleles.get(0), alleles.get(0)); - assertThat(proband.getType(), equalTo(GenotypeType.HOM_REF)); - - Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); - assertThat(mother.getType(), equalTo(GenotypeType.HET)); - - Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); - assertThat(father.getType(), equalTo(GenotypeType.HET)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); - PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); - PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); - Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> assertThat(variant.getInheritanceModes().isEmpty(), is(true))); - } - - @Test - public void testAnalyseInheritanceModes_MultiSample_OnePassedVariant_HET_shouldBeCompatibleWith_AD() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T"); - // build Genotype - //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases - Genotype proband = buildSampleGenotype("Cain", alleles.get(0), alleles.get(1)); - assertThat(proband.getType(), equalTo(GenotypeType.HET)); - - Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(0)); - assertThat(mother.getType(), equalTo(GenotypeType.HOM_REF)); - - Genotype father = buildSampleGenotype("Adam", alleles.get(0), alleles.get(0)); - assertThat(father.getType(), equalTo(GenotypeType.HOM_REF)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); - PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); - PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); - Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_DOMINANT); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT))); - } - - @Test - public void testAnalyseInheritanceModes_MultiSample_MultiAllelic_TwoPassedVariant_HOM_VAR_shouldBeCompatibleWith_AR() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T", "C"); - // build Genotype - //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases - Genotype proband = buildSampleGenotype("Cain", alleles.get(2), alleles.get(2)); - assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); - - Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); - assertThat(mother.getType(), equalTo(GenotypeType.HET)); - - Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); - assertThat(father.getType(), equalTo(GenotypeType.HET)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - gene.addVariant(filteredVariant(1, 12345, "A", "C", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); - PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); - PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); - Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> { - System.out.println(variantString(variant)); - assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); - }); - } - - private String variantString(VariantEvaluation variant) { - return String.format("%s\t%s\t%s\t%s\t%s",variant.getChromosome(), variant.getRef(), variant.getAlt(), variant.getAltAlleleId(), variant.getGenotypeAsString()); - } - - /** - * Currently ignored as Jannovar multi-allelic inheritance compatibility is broken for multi-sample VCF. - */ - @Ignore - @Test - public void testAnalyseInheritanceModes_MultiSample_MultiAllelic_OnePassedVariant_HOM_VAR_altAllele2_shouldBeCompatibleWith_AR() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T", "C"); - // build Genotype - //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases - Genotype proband = buildSampleGenotype("Cain", alleles.get(2), alleles.get(2)); - assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); - - Genotype mother = buildSampleGenotype("Eve", alleles.get(1), alleles.get(1)); - assertThat(mother.getType(), equalTo(GenotypeType.HOM_VAR)); - - Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); - assertThat(father.getType(), equalTo(GenotypeType.HET)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new FailFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - gene.addVariant(filteredVariant(1, 12345, "A", "C", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); - PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); - PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); - Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> { - System.out.println(variantString(variant)); - assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); - }); - } - - /** - * Currently ignored as Jannovar multi-allelic inheritance compatibility is broken for multi-sample VCF. - */ - @Ignore - @Test - public void testAnalyseInheritanceModes_MultiSample_MultiAllelic_OnePassedVariant_HET_shouldBeCompatibleWith_AD() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T", "C"); - - Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(2)); - assertThat(proband.getType(), equalTo(GenotypeType.HET)); - - Genotype brother = buildSampleGenotype("Abel", alleles.get(1), alleles.get(1)); - assertThat(brother.getType(), equalTo(GenotypeType.HOM_VAR)); - - Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); - assertThat(mother.getType(), equalTo(GenotypeType.HET)); - - Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); - assertThat(father.getType(), equalTo(GenotypeType.HET)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, brother, mother, father); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new FailFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - gene.addVariant(filteredVariant(1, 12345, "A", "C", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); - PedPerson brotherPerson = new PedPerson("Family", "Abel", "Adam", "Eve", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); - PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); - PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); - Pedigree pedigree = buildPedigree(probandPerson, brotherPerson, motherPerson, fatherPerson); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_DOMINANT); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> { - System.out.println(variantString(variant)); - assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - }); - } - - - @Test - public void testAnalyseInheritanceModes_SingleSample_MultiAllelic_OnePassedVariant_HET_shouldBeCompatibleWith_AD() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T", "C"); - - Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(2)); - assertThat(proband.getType(), equalTo(GenotypeType.HET)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new FailFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - gene.addVariant(filteredVariant(1, 12345, "A", "C", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Cain"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_DOMINANT); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> { - System.out.println(variantString(variant)); - assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - }); - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_MultiAllelic_TwoPassedVariant_HET_shouldBeCompatibleWith_AD() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T", "C"); - - Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(2)); - assertThat(proband.getType(), equalTo(GenotypeType.HET)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - gene.addVariant(filteredVariant(1, 12345, "A", "C", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Cain"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_DOMINANT); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> { - System.out.println(variantString(variant)); - assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); - }); - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_MultiAllelic_TwoPassedVariant_HOM_VAR_Allele2_shouldBeCompatibleWith_AR() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T", "C"); - - Genotype proband = buildSampleGenotype("Cain", alleles.get(2), alleles.get(2)); - assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - gene.addVariant(filteredVariant(1, 12345, "A", "C", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Cain"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> { - System.out.println(variantString(variant)); - assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); - }); - } - - @Test - public void testAnalyseInheritanceModes_SingleSample_MultiAllelic_TwoPassedVariant_HOM_VAR_Allele1_shouldBeCompatibleWith_AR() { - Gene gene = new Gene("ABC", 123); - List alleles = buildAlleles("A", "T", "C"); - - Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(1)); - assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); - - VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband); - System.out.println("Built variant context " + variantContext); - - gene.addVariant(filteredVariant(1, 12345, "A", "T", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - gene.addVariant(filteredVariant(1, 12345, "A", "C", new PassFilterResult(FilterType.FREQUENCY_FILTER), variantContext)); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Cain"); - - InheritanceModeAnalyser instance = new InheritanceModeAnalyser(pedigree, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.analyseInheritanceModes(gene); - assertThat(gene.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - - gene.getPassedVariantEvaluations() - .forEach(variant -> { - System.out.println(variantString(variant)); - assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); - }); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/RawScoreGeneScorerTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/RawScoreGeneScorerTest.java deleted file mode 100644 index a4794f4a6..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/RawScoreGeneScorerTest.java +++ /dev/null @@ -1,324 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.analysis.util; - -import com.google.common.collect.Lists; -import de.charite.compbio.exomiser.core.filters.FailFilterResult; -import de.charite.compbio.exomiser.core.filters.FilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.filters.PassFilterResult; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.MockPriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import org.junit.Before; -import org.junit.Test; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.List; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.assertThat; - -/** - * - * @author Jules Jacobsen - */ -public class RawScoreGeneScorerTest { - - private RawScoreGeneScorer instance; - - private static final FilterResult PASS_FREQUENCY = new PassFilterResult(FilterType.FREQUENCY_FILTER); - private static final FilterResult FAIL_FREQUENCY = new FailFilterResult(FilterType.FREQUENCY_FILTER); - private static final FilterResult PASS_PATHOGENICITY = new PassFilterResult(FilterType.PATHOGENICITY_FILTER); - private static final FilterResult FAIL_PATHOGENICITY = new FailFilterResult(FilterType.PATHOGENICITY_FILTER); - - @Before - public void setUp() { - instance = new RawScoreGeneScorer(); - } - - private Gene newGene(VariantEvaluation... variantEvaluations) { - Gene gene = new Gene("TEST1", 1234); - Arrays.stream(variantEvaluations).forEach(gene::addVariant); - return gene; - } - - private VariantEvaluation failFreq() { - VariantEvaluation variant = new VariantEvaluation - .VariantBuilder(1, 1, "A", "T") - .variantEffect(VariantEffect.MISSENSE_VARIANT) - .build(); - variant.addFilterResult(FAIL_FREQUENCY); - return variant; - } - - private VariantEvaluation passAllFrameShift() { - VariantEvaluation variant = new VariantEvaluation - .VariantBuilder(1, 1, "A", "T") - .variantEffect(VariantEffect.FRAMESHIFT_VARIANT) - .build(); - variant.addFilterResult(PASS_FREQUENCY); - variant.addFilterResult(PASS_PATHOGENICITY); - return variant; - } - - private VariantEvaluation passAllMissense() { - VariantEvaluation variant = new VariantEvaluation - .VariantBuilder(1, 1, "A", "T") - .variantEffect(VariantEffect.MISSENSE_VARIANT) - .build(); - - variant.addFilterResult(PASS_FREQUENCY); - variant.addFilterResult(PASS_PATHOGENICITY); - return variant; - } - - private VariantEvaluation passAllSynonymous() { - VariantEvaluation variant = new VariantEvaluation - .VariantBuilder(1, 1, "A", "T") - .variantEffect(VariantEffect.SYNONYMOUS_VARIANT) - .build(); - variant.addFilterResult(PASS_FREQUENCY); - variant.addFilterResult(PASS_PATHOGENICITY); - return variant; - } - - @Test - public void testScoreGeneWithoutPriorityResultsOrVariants_UNINITIALIZED() { - Gene gene = newGene(); - instance.scoreGene(gene, ModeOfInheritance.UNINITIALIZED); - assertThat(gene.getFilterScore(), equalTo(0f)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(0f)); - } - - @Test - public void testScoreGeneWithoutPriorityResultsOrVariants_AUTOSOMAL_DOMINANT() { - Gene gene = newGene(); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_DOMINANT); - assertThat(gene.getFilterScore(), equalTo(0f)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(0f)); - } - - @Test - public void testScoreGeneWithoutPriorityResultsOrVariants_AUTOSOMAL_RECESSIVE() { - Gene gene = newGene(); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - assertThat(gene.getFilterScore(), equalTo(0f)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(0f)); - } - - @Test - public void testScoreGeneWithSingleFailedVariant_UNINITIALIZED() { - Gene gene = newGene(failFreq()); - instance.scoreGene(gene, ModeOfInheritance.UNINITIALIZED); - assertThat(gene.getFilterScore(), equalTo(0f)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(0f)); - } - - @Test - public void testScoreGeneWithSingleFailedVariant_AUTOSOMAL_DOMINANT() { - Gene gene = newGene(failFreq()); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_DOMINANT); - assertThat(gene.getFilterScore(), equalTo(0f)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(0f)); - } - - @Test - public void testScoreGeneWithSingleFailedVariant_AUTOSOMAL_RECESSIVE() { - Gene gene = newGene(failFreq()); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - assertThat(gene.getFilterScore(), equalTo(0f)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(0f)); - } - - @Test - public void testCalculateNonAutosomalRecessiveFilterScoreReturnsZeroIfVariantListIsEmpty() { - List variantEvaluations = new ArrayList<>(); - - float calculatedScore = instance.calculateNonAutosomalRecessiveFilterScore(variantEvaluations); - - assertThat(calculatedScore, equalTo(0f)); - } - - @Test - public void testScoreGeneWithSinglePassedVariant_UNINITIALIZED() { - VariantEvaluation passAllFrameshift = passAllFrameShift(); - Gene gene = newGene(passAllFrameshift); - instance.scoreGene(gene, ModeOfInheritance.UNINITIALIZED); - - float variantScore = passAllFrameshift.getVariantScore(); - - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testScoreGeneWithSinglePassedVariant_AUTOSOMAL_DOMINANT() { - VariantEvaluation passAllFrameshift = passAllFrameShift(); - Gene gene = newGene(passAllFrameshift); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_DOMINANT); - - float variantScore = passAllFrameshift.getVariantScore(); - - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testScoreGeneWithSinglePassedVariant_AUTOSOMAL_RECESSIVE() { - VariantEvaluation passAllFrameShift = passAllFrameShift(); - Gene gene = newGene(passAllFrameShift); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - float variantScore = passAllFrameShift.getVariantScore(); - - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testScoreGeneWithSinglePassedAndSingleFailedVariantOnlyPassedVariantIsConsidered() { - VariantEvaluation passAllFrameshift = passAllFrameShift(); - - Gene gene = newGene(passAllFrameshift, failFreq()); - instance.scoreGene(gene, ModeOfInheritance.UNINITIALIZED); - - float variantScore = passAllFrameshift.getVariantScore(); - - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testScoreGeneWithTwoPassedVariants_UNINITIALIZED_inheritance() { - VariantEvaluation passAllMissense = passAllMissense(); - VariantEvaluation passAllFrameshift = passAllFrameShift(); - - Gene gene = newGene(passAllFrameshift, passAllMissense); - instance.scoreGene(gene, ModeOfInheritance.UNINITIALIZED); - - float variantScore = passAllFrameshift.getVariantScore(); - - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testScoreGeneWithTwoPassedVariants_AUTOSOMAL_DOMINANT_inheritance() { - VariantEvaluation passAllMissense = passAllMissense(); - VariantEvaluation passAllFrameshift = passAllFrameShift(); - - Gene gene = newGene(passAllFrameshift, passAllMissense); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_DOMINANT); - - float variantScore = passAllFrameshift.getVariantScore(); - - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testScoreGeneWithTwoPassedVariants_X_DOMINANT_inheritance() { - VariantEvaluation passAllMissense = passAllMissense(); - VariantEvaluation passAllFrameshift = passAllFrameShift(); - - Gene gene = newGene(passAllFrameshift, passAllMissense); - instance.scoreGene(gene, ModeOfInheritance.X_DOMINANT); - - float variantScore = passAllFrameshift.getVariantScore(); - - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testScoreGeneWithTwoPassedVariants_AUTOSOMAL_RECESSIVE_inheritance() { - VariantEvaluation passAllMissense = passAllMissense(); - VariantEvaluation passAllFrameshift = passAllFrameShift(); - - Gene gene = newGene(passAllMissense, passAllFrameshift); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - float variantScore = (passAllFrameshift.getVariantScore() + passAllMissense.getVariantScore()) / 2f; - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testScoreGeneWithThreePassedVariants_AUTOSOMAL_RECESSIVE_inheritance() { - VariantEvaluation passAllMissense = passAllMissense(); - VariantEvaluation passAllSynonymous = passAllSynonymous(); - VariantEvaluation passAllFrameshift = passAllFrameShift(); - - Gene gene = newGene(passAllMissense, passAllSynonymous, passAllFrameshift); - instance.scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - float variantScore = (passAllFrameshift.getVariantScore() + passAllMissense.getVariantScore()) / 2f; - - assertThat(gene.getFilterScore(), equalTo(variantScore)); - assertThat(gene.getPriorityScore(), equalTo(0f)); - assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); - } - - @Test - public void testGenesAreRankedAccordingToScore() { - Gene first = new Gene("FIRST", 1111); - first.addVariant(passAllFrameShift()); - first.addPriorityResult(new MockPriorityResult(PriorityType.HIPHIVE_PRIORITY, first.getEntrezGeneID(), first.getGeneSymbol(), 1d)); - - Gene middle = new Gene("MIDDLE", 2222); - middle.addVariant(passAllMissense()); - middle.addPriorityResult(new MockPriorityResult(PriorityType.HIPHIVE_PRIORITY, middle.getEntrezGeneID(), middle.getGeneSymbol(), 1d)); - - Gene last = new Gene("LAST", 3333); - last.addVariant(passAllSynonymous()); - last.addPriorityResult(new MockPriorityResult(PriorityType.HIPHIVE_PRIORITY, last.getEntrezGeneID(), last.getGeneSymbol(), 1d)); - - List genes = Lists.newArrayList(last, first, middle); - Collections.shuffle(genes); - - instance.scoreGenes(genes, ModeOfInheritance.UNINITIALIZED); - - genes.forEach(System.out::println); - - assertThat(genes.indexOf(first), equalTo(0)); - assertThat(genes.indexOf(middle), equalTo(1)); - assertThat(genes.indexOf(last), equalTo(2)); - } - - ///Priority and Combined score tests - @Test - public void testCalculateCombinedScoreFromUnoptimisedPrioritiser() { - Gene gene = newGene(); - gene.addPriorityResult(new MockPriorityResult(PriorityType.OMIM_PRIORITY, gene.getEntrezGeneID(), gene.getGeneSymbol(), 1d)); - - instance.scoreGene(gene, ModeOfInheritance.UNINITIALIZED); - - assertThat(gene.getFilterScore(), equalTo(0f)); - assertThat(gene.getPriorityScore(), equalTo(1f)); - assertThat(gene.getCombinedScore(), equalTo(0.5f)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/CaddDaoTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/CaddDaoTest.java deleted file mode 100644 index b840a56bd..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/CaddDaoTest.java +++ /dev/null @@ -1,232 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.pathogenicity.CaddScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import htsjdk.tribble.readers.TabixReader; -import htsjdk.variant.variantcontext.VariantContext; -import htsjdk.variant.variantcontext.VariantContextBuilder; -import java.io.IOException; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; -import org.junit.runner.RunWith; -import org.mockito.Mock; -import org.mockito.Mockito; -import org.mockito.runners.MockitoJUnitRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(MockitoJUnitRunner.class) -public class CaddDaoTest { - - private CaddDao instance; - - @Mock - private TabixReader snvTabixReader; - @Mock - private TabixReader indelTabixReader; - - private MockTabixIterator mockIterator; - - @Before - public void setUp() { - //What's all this about? Well we're removing the requirement for reading files from disk - //by mocking the TabixReaders. Unfortunately these are concrete classes with no interface so - //the mocking is event based with canned answers coming from Mockito which replicates an - //internal call in the Dao: - //TabixReader.Iterator results = inDelTabixReader.query(chromosome, start, start); - //The MockTabixIterator will return a list of lines - - mockIterator = new MockTabixIterator(); - Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(mockIterator); - Mockito.when(snvTabixReader.query("1:2-2")).thenReturn(mockIterator); - instance = new CaddDao(indelTabixReader, snvTabixReader); - } - - private static VariantEvaluation variant(int chr, int pos, String ref, String alt) { - if (ref.equals("-") || alt.equals("-")) { - //this is used to get round the fact that in real life the variant evaluation - //is built from a variantContext and some variantAnnotations - return new VariantEvaluation.VariantBuilder(chr, pos, ref, alt) - .variantContext(Mockito.mock(VariantContext.class)) - .build(); - } - return new VariantEvaluation.VariantBuilder(chr, pos, ref, alt).build(); - } - - private void assertThatPathDataHasNoCaddScore(PathogenicityData result) { - assertThat(result.getPredictedPathogenicityScores().isEmpty(), is(true)); - assertThat(result.hasPredictedScore(PathogenicitySource.CADD), is(false)); - assertThat(result.getCaddScore(), nullValue()); - } - - private void assertPathDataContainsCaddScore(PathogenicityData result, float score) { - CaddScore expected = new CaddScore(score); - assertThat(result.getPredictedPathogenicityScores().size(), equalTo(1)); - assertThat(result.hasPredictedScore(PathogenicitySource.CADD), is(true)); - assertThat(result.getCaddScore(), equalTo(expected)); - } - - @Test - public void testGetPathogenicityData_unableToReadFromSnvSource() { - Mockito.when(snvTabixReader.query("1:2-2")).thenThrow(IOException.class); - assertThat(instance.getPathogenicityData(variant(1, 2, "A", "T")), equalTo(new PathogenicityData())); - } - - @Test - public void testGetPathogenicityData_snvNoData() { - PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "T")); - - assertThatPathDataHasNoCaddScore(result); - } - - @Test - public void testGetPathogenicityData_insertionNoData() { - PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "-", "A")); - - assertThatPathDataHasNoCaddScore(result); - } - - @Test - public void testGetPathogenicityData_unableToReadFromInDelSource() { - Mockito.when(indelTabixReader.query("1:2-2")).thenThrow(IOException.class); - assertThat(instance.getPathogenicityData(variant(1, 2, "-", "A")), equalTo(new PathogenicityData())); - } - - @Test - public void testGetPathogenicityData_insertionSingleVariantAtPosition_NoMatch() { - mockIterator.setValues(Arrays.asList( - "1\t1\tA\tAT\t-0.234\t3.45", - "1\t1\tA\tAC\t-0.234\t4.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "-", "A")); - - assertThatPathDataHasNoCaddScore(result); - } - - @Test - public void testGetPathogenicityData_insertionSingleVariantAtPosition_OneMatch() { - mockIterator.setValues(Arrays.asList("1\t2\tA\tAA\t-0.234\t3.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "-", "A")); - - assertPathDataContainsCaddScore(result, 0.54814404f); - } - - @Test - public void testGetPathogenicityData_insertionMultipleVariantsAtPosition_OneMatch() { - mockIterator.setValues(Arrays.asList( - "\t\tA\tAC\t-0.234\t4.45", - "\t\tA\tAT\t-0.234\t3.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "-", "T")); - - assertPathDataContainsCaddScore(result, 0.54814404f); - } - - @Test - public void testGetPathogenicityData_deletionNoData() { - PathogenicityData result = instance.getPathogenicityData(variant(1, 3, "A", "-")); - - assertThatPathDataHasNoCaddScore(result); - } - - @Test - public void testGetPathogenicityData_deletionSingleVariantAtPosition_NoMatch() { - mockIterator.setValues(Arrays.asList( - "1\t1\tAT\tA\t-0.234\t3.45", - "1\t1\tAC\tA\t-0.234\t4.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 3, "A", "-")); - - assertThatPathDataHasNoCaddScore(result); - } - - @Test - public void testGetPathogenicityData_deletionSingleVariantAtPosition_OneMatch() { - mockIterator.setValues(Arrays.asList("1\t2\tAA\tA\t-0.234\t3.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 3, "A", "-")); - - assertPathDataContainsCaddScore(result, 0.54814404f); - } - - @Test - public void testGetPathogenicityData_deletionMultipleVariantsAtPosition_OneMatch() { - mockIterator.setValues(Arrays.asList( - "\t\tAC\tA\t-0.234\t4.45", - "\t\tAT\tA\t-0.234\t3.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 3, "T", "-")); - - assertPathDataContainsCaddScore(result, 0.54814404f); - } - - @Test - public void testGetPathogenicityData_snvSingleVariantAtPosition_NoMatch() { - mockIterator.setValues(Arrays.asList( - "1\t1\tA\tT\t-0.234\t3.45", - "1\t1\tA\tC\t-0.234\t4.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "G")); - - assertThatPathDataHasNoCaddScore(result); - } - - @Test - public void testGetPathogenicityData_snvSingleVariantAtPosition_OneMatch() { - mockIterator.setValues(Arrays.asList("1\t1\tA\tT\t-0.234\t3.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "T")); - - assertPathDataContainsCaddScore(result, 0.54814404f); - } - - @Test - public void testGetPathogenicityData_snvXchrSingleVariantAtPosition_OneMatch() { - Mockito.when(snvTabixReader.query("X:1-1")).thenReturn(mockIterator); - mockIterator.setValues(Arrays.asList("1\t1\tA\tT\t-0.234\t3.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(23, 1, "A", "T")); - - assertPathDataContainsCaddScore(result, 0.54814404f); - } - - @Test - public void testGetPathogenicityData_snvYchrSingleVariantAtPosition_OneMatch() { - Mockito.when(snvTabixReader.query("Y:1-1")).thenReturn(mockIterator); - mockIterator.setValues(Arrays.asList("1\t1\tA\tT\t-0.234\t3.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(24, 1, "A", "T")); - - assertPathDataContainsCaddScore(result, 0.54814404f); - } - - @Test - public void testGetPathogenicityData_snvMultipleVariantsAtPosition_OneMatch() { - mockIterator.setValues(Arrays.asList( - "\t\tA\tT\t-0.234\t3.45", - "\t\tA\tC\t-0.234\t4.45")); - - PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "T")); - - assertPathDataContainsCaddScore(result, 0.54814404f); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DaoTestConfig.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DaoTestConfig.java deleted file mode 100644 index 7c45a41d7..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DaoTestConfig.java +++ /dev/null @@ -1,87 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import javax.sql.DataSource; -import org.h2.jdbcx.JdbcConnectionPool; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.ComponentScan; -import org.springframework.context.annotation.Configuration; - -/** - * - * @author Jules Jacobsen - */ -@Configuration -public class DaoTestConfig { - - @Bean - public DataSource dataSource() { - String url = "jdbc:h2:mem:exomiser;MODE=PostgreSQL;DATABASE_TO_UPPER=FALSE;"; - String user = "sa"; - String password = "sa"; - - JdbcConnectionPool dataSource = JdbcConnectionPool.create(url, user, password); - return dataSource; - } - - @Bean - public DefaultFrequencyDao defaultFrequencyDao() { - return new DefaultFrequencyDao(); - } - - @Bean - public DefaultPathogenicityDao defaultPathogenicityDao() { - return new DefaultPathogenicityDao(); - } - - @Bean - public DiseaseDao defaultDiseaseDao() { - return new DefaultDiseaseDao(); - } - - @Bean - public HumanPhenotypeOntologyDao humanPhenotypeOntologyDao() { - return new HumanPhenotypeOntologyDao(); - } - - @Bean MousePhenotypeOntologyDao mousePhenotypeOntologyDao() { - return new MousePhenotypeOntologyDao(); - } - - @Bean ZebraFishPhenotypeOntologyDao zebraFishPhenotypeOntologyDao() { - return new ZebraFishPhenotypeOntologyDao(); - } - - @Bean - public TadDao tadDao() { - return new TadDao(); - } - - @Bean - public RegulatoryFeatureDao regulatoryFeatureDao() { - return new RegulatoryFeatureDao(); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultDiseaseDaoTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultDiseaseDaoTest.java deleted file mode 100644 index 54b5aab0f..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultDiseaseDaoTest.java +++ /dev/null @@ -1,56 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import java.util.Arrays; -import java.util.HashMap; -import java.util.Map; -import java.util.Set; -import java.util.TreeSet; -import static org.hamcrest.CoreMatchers.equalTo; -import org.junit.Test; -import static org.junit.Assert.*; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.jdbc.Sql; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = DaoTestConfig.class) -@Sql(scripts = {"file:src/test/resources/sql/create_disease.sql", "file:src/test/resources/sql/create_disease_hp.sql", "file:src/test/resources/sql/diseaseDaoTestData.sql"}) -public class DefaultDiseaseDaoTest { - - @Autowired - DiseaseDao instance; - - @Test - public void testGetHpoIdsForDiseaseId() { - Set omim101600HpoIds = new TreeSet<>( - Arrays.asList("HP:0000174","HP:0000194","HP:0000218","HP:0000238", - "HP:0000244","HP:0000272","HP:0000303","HP:0000316","HP:0000322", - "HP:0000324","HP:0000327","HP:0000348","HP:0000431","HP:0000452", - "HP:0000453","HP:0000470","HP:0000486","HP:0000494","HP:0000508", - "HP:0000586","HP:0000678","HP:0001156","HP:0001249","HP:0002308", - "HP:0002676","HP:0002780","HP:0003041","HP:0003070","HP:0003196", - "HP:0003272","HP:0003307","HP:0003795","HP:0004209","HP:0004322", - "HP:0004440","HP:0005048","HP:0005280","HP:0005347","HP:0006101", - "HP:0006110","HP:0009602","HP:0009773","HP:0010055","HP:0010669", - "HP:0011304")); - assertThat(instance.getHpoIdsForDiseaseId("OMIM:101600"), equalTo(omim101600HpoIds)); - } - - @Test - public void testGetDiseaseIdToTerms() { - Map expected = new HashMap<>(); - expected.put("OMIM:101600", "Pfeiffer syndrome"); - assertThat(instance.getDiseaseIdToTerms(), equalTo(expected)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultFrequencyDaoTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultFrequencyDaoTest.java deleted file mode 100644 index d3a00e6c5..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultFrequencyDaoTest.java +++ /dev/null @@ -1,96 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import java.util.Collections; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; - -import org.junit.Before; -import org.junit.Test; - -import static org.junit.Assert.*; - -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.jdbc.Sql; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - - -/** - * - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = DaoTestConfig.class) -@Sql(scripts = { "file:src/test/resources/sql/create_frequency.sql", - "file:src/test/resources/sql/frequencyDaoTestData.sql" }) -public class DefaultFrequencyDaoTest { - - @Autowired - private DefaultFrequencyDao instance; - - Variant variantNotInDatabase; - Variant variantInDatabaseWithRsId; - - RsId rsId = new RsId(121918506); - Frequency dbSnp = new Frequency(0.01f, FrequencySource.THOUSAND_GENOMES); - Frequency espAll = new Frequency(0.02f, FrequencySource.ESP_ALL); - Frequency espAa = new Frequency(0.03f, FrequencySource.ESP_AFRICAN_AMERICAN); - Frequency espEa = new Frequency(0.04f, FrequencySource.ESP_EUROPEAN_AMERICAN); - - private static final FrequencyData NO_DATA = FrequencyData.EMPTY_DATA; - - @Before - public void setUp() { - variantNotInDatabase = new VariantEvaluation.VariantBuilder(1, 124, "T", "G").build(); - //Exomiser currently uses ONE_BASED numbering - be wary.... - variantInDatabaseWithRsId = new VariantEvaluation.VariantBuilder(10, 123256215, "T", "G").build(); - } - - @Test - public void testVariantNotInDatabaseReturnsAnEmptyFrequencyData() { - FrequencyData result = instance.getFrequencyData(variantNotInDatabase); - - assertThat(result, equalTo(NO_DATA)); - assertThat(result.isRepresentedInDatabase(), is(false)); - } - - @Test - public void testVariantInDatabaseReturnsFrequencyData() { - FrequencyData result = instance.getFrequencyData(variantInDatabaseWithRsId); - FrequencyData expected = new FrequencyData(rsId, dbSnp, espAa, espAll, espEa); - assertThat(result, equalTo(expected)); - assertThat(result.isRepresentedInDatabase(), is(true)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultPathogenicityDaoTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultPathogenicityDaoTest.java deleted file mode 100644 index 5f4911d25..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/DefaultPathogenicityDaoTest.java +++ /dev/null @@ -1,152 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.pathogenicity.CaddScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.MutationTasterScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.SiftScore; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.assertThat; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.jdbc.Sql; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = DaoTestConfig.class) -@Sql(scripts = {"file:src/test/resources/sql/create_pathogenicity.sql", "file:src/test/resources/sql/pathogenicityDaoTestData.sql"}) -public class DefaultPathogenicityDaoTest { - - @Autowired - private DefaultPathogenicityDao instance; - - private static final SiftScore SIFT_SCORE = new SiftScore(0f); - private static final PolyPhenScore POLY_PHEN_SCORE = new PolyPhenScore(0.998f); - private static final MutationTasterScore MUTATION_TASTER_SCORE = new MutationTasterScore(1.0f); - private static final CaddScore CADD_SCORE = new CaddScore(23.7f); - - private static final PathogenicityData NO_PATH_DATA = PathogenicityData.EMPTY_DATA; - - private final Variant missenseVariantInDatabase = makeMissenseVariant(10, 123256215, "T", "G"); - - private Variant makeMissenseVariant(int chr, int pos, String ref, String alt) { - return new VariantEvaluation.VariantBuilder(chr, pos, ref, alt) - .variantEffect(VariantEffect.MISSENSE_VARIANT) - .build(); - } - - @Test - public void testNonMissenseVariantReturnsAnEmptyPathogenicityData() { - Variant nonMissenseVariant = new VariantEvaluation.VariantBuilder(0, 0, "A", "T") - .variantEffect(VariantEffect.DOWNSTREAM_GENE_VARIANT) - .build(); - PathogenicityData result = instance.getPathogenicityData(nonMissenseVariant); - - assertThat(result, equalTo(NO_PATH_DATA)); - assertThat(result.hasPredictedScore(), is(false)); - } - - @Test - public void testMissenseVariantReturnsAnEmptyPathogenicityDataWhenNotInDatabase() { - Variant missenseVariantNotInDatabase = makeMissenseVariant(0, 0, "T", "G"); - PathogenicityData result = instance.getPathogenicityData(missenseVariantNotInDatabase); - - assertThat(result, equalTo(NO_PATH_DATA)); - assertThat(result.hasPredictedScore(), is(false)); - } - - @Test - public void testMissenseVariantReturnsPathogenicityDataWhenInDatabase() { - PathogenicityData result = instance.getPathogenicityData(missenseVariantInDatabase); - PathogenicityData expected = new PathogenicityData(POLY_PHEN_SCORE, MUTATION_TASTER_SCORE, SIFT_SCORE); - assertThat(result, equalTo(expected)); - } - - /** - * As of 20150511 we're not going to use the CADD data from the database as - * it requires normalising and hasn't been using it will COMPLETELY FUBAR - * THE PATHOGENICITY FILTER, so don't add it back until it's normalised on - * a 0-1 scale. - */ - @Test - public void testPathogenicityDaoDoesNotReturnCaddScoreEvenWhenPresentInDatabase() { - PathogenicityData result = instance.getPathogenicityData(missenseVariantInDatabase); - assertThat(result.hasPredictedScore(PathogenicitySource.CADD), is(false)); - } - - @Test - public void testMissenseVariantInDatabaseWithNullSift() { - Variant missenseVariantWithNullSift = makeMissenseVariant(1, 1, "A", "T"); - PathogenicityData result = instance.getPathogenicityData(missenseVariantWithNullSift); - PathogenicityData expected = new PathogenicityData(POLY_PHEN_SCORE, MUTATION_TASTER_SCORE); - assertThat(result, equalTo(expected)); - } - - @Test - public void testMissenseVariantInDatabaseWithNullCadd() { - Variant missenseVariantWithNullCadd = makeMissenseVariant(1, 4, "A", "T"); - PathogenicityData result = instance.getPathogenicityData(missenseVariantWithNullCadd); - PathogenicityData expected = new PathogenicityData(POLY_PHEN_SCORE, MUTATION_TASTER_SCORE, SIFT_SCORE); - assertThat(result, equalTo(expected)); - } - - @Test - public void testMissenseVariantInDatabaseWithNullPolyPhen() { - Variant missenseVariantWithNullPolyPhen = makeMissenseVariant(1, 2, "A", "T"); - PathogenicityData result = instance.getPathogenicityData(missenseVariantWithNullPolyPhen); - PathogenicityData expected = new PathogenicityData(MUTATION_TASTER_SCORE, SIFT_SCORE); - assertThat(result, equalTo(expected)); - } - - @Test - public void testMissenseVariantInDatabaseWithNullMutTaster() { - Variant missenseVariantWithNullMutTaster = makeMissenseVariant(1, 3, "A", "T"); - PathogenicityData result = instance.getPathogenicityData(missenseVariantWithNullMutTaster); - PathogenicityData expected = new PathogenicityData(POLY_PHEN_SCORE, SIFT_SCORE); - assertThat(result, equalTo(expected)); - } - - @Test - public void testMissenseVariantWithMultipleRowsReturnsBestScores() { - Variant missenseVariantWithMultipleRows = makeMissenseVariant(1, 5, "A", "T"); - PathogenicityData result = instance.getPathogenicityData(missenseVariantWithMultipleRows); - PathogenicityData expected = new PathogenicityData(POLY_PHEN_SCORE, MUTATION_TASTER_SCORE, SIFT_SCORE); - assertThat(result, equalTo(expected)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/HumanPhenotypeOntologyDaoTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/HumanPhenotypeOntologyDaoTest.java deleted file mode 100644 index 9eef06f53..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/HumanPhenotypeOntologyDaoTest.java +++ /dev/null @@ -1,112 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.HashMap; -import java.util.HashSet; -import java.util.LinkedHashSet; -import java.util.Map; -import java.util.Map.Entry; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.jdbc.Sql; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = DaoTestConfig.class) -@Sql(scripts = {"file:src/test/resources/sql/create_hpo.sql", "file:src/test/resources/sql/humanPhenotypeOntologyDaoTestData.sql"}) -public class HumanPhenotypeOntologyDaoTest { - - @Autowired - HumanPhenotypeOntologyDao instance; - - private Set allHpoTerms; - private Map allHpoAsStrings; - - private final PhenotypeTerm multicysticKidneyDysplasia = new PhenotypeTerm("HP:0000003", "Multicystic kidney dysplasia", 0d); - private Set phenotypeMatches; - - @Before - public void setUp() { - allHpoAsStrings = new HashMap<>(); - allHpoAsStrings.put("HP:0000001", "All"); - allHpoAsStrings.put("HP:0000002", "Abnormality of body height"); - allHpoAsStrings.put("HP:0000003", "Multicystic kidney dysplasia"); - allHpoAsStrings.put("HP:0000005", "Mode of inheritance"); - allHpoAsStrings.put("HP:0000006", "Autosomal dominant inheritance"); - - phenotypeMatches = new LinkedHashSet<>(); -// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM -//0.769231 5.347805 2.028225214383722 HP:0100877 Renal diverticulum HP:0000107 Renal cyst - PhenotypeTerm renalDiverticulum = new PhenotypeTerm("HP:0100877", "Renal diverticulum", 0d); - PhenotypeTerm renalCyst = new PhenotypeTerm("HP:0000107", "Renal cyst", 5.347805d); - PhenotypeMatch diverticulumMatch = new PhenotypeMatch(multicysticKidneyDysplasia, renalDiverticulum, 0.769231, 2.028225214383722, renalCyst); - phenotypeMatches.add(diverticulumMatch); - -// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM -//0.380952 3.020727 1.0727310768221452 HP:0100881 Congenital mesoblastic nephroma HP:0000077 Abnormality of the kidney - PhenotypeTerm mesoblasticNephroma = new PhenotypeTerm("HP:0100881", "Congenital mesoblastic nephroma", 0d); - PhenotypeTerm kidneyAbnormality = new PhenotypeTerm("HP:0000077", "Abnormality of the kidney", 3.020727d); - PhenotypeMatch mesoblasticMatch = new PhenotypeMatch(multicysticKidneyDysplasia, mesoblasticNephroma, 0.380952, 1.0727310768221452, kidneyAbnormality); - phenotypeMatches.add(mesoblasticMatch); - -// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM -//0.75 3.442544 1.6068316612497417 HP:0100880 Nephrogenic rest HP:0012210 Abnormal renal morphology - PhenotypeTerm nephrogenicRest = new PhenotypeTerm("HP:0100880", "Nephrogenic rest", 0d); - PhenotypeTerm abnormalRenalMorphology = new PhenotypeTerm("HP:0012210", "Abnormal renal morphology", 3.442544d); - PhenotypeMatch nephrogenicRestMatch = new PhenotypeMatch(multicysticKidneyDysplasia, nephrogenicRest, 0.75, 1.6068316612497417, abnormalRenalMorphology); - phenotypeMatches.add(nephrogenicRestMatch); - -// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM -//0.642857 3.442544 1.48763690115246 HP:0001917 Renal amyloidosis HP:0012210 Abnormal renal morphology - PhenotypeTerm renalAmyloidosis = new PhenotypeTerm("HP:0001917", "Renal amyloidosis", 0d); - PhenotypeMatch renalAmyloidosisMatch = new PhenotypeMatch(multicysticKidneyDysplasia, renalAmyloidosis, 0.642857, 1.48763690115246, abnormalRenalMorphology); - phenotypeMatches.add(renalAmyloidosisMatch); - -// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM -//0.533333 3.020727 1.269272768407093 HP:0001919 Acute kidney injury HP:0000077 Abnormality of the kidney - PhenotypeTerm acuteKidneyInjury = new PhenotypeTerm("HP:0001919", "Acute kidney injury", 0d); - PhenotypeMatch acuteKidneyInjuryMatch = new PhenotypeMatch(multicysticKidneyDysplasia, acuteKidneyInjury, 0.533333, 1.269272768407093, kidneyAbnormality); - phenotypeMatches.add(acuteKidneyInjuryMatch); - - allHpoTerms = new HashSet<>(); - for (Entry termAsStrings : allHpoAsStrings.entrySet()) { - allHpoTerms.add(new PhenotypeTerm(termAsStrings.getKey(), termAsStrings.getValue(), 0d)); - } - } - - @Test - public void testGetAllTerms() { - assertThat(instance.getAllTerms(), equalTo(allHpoTerms)); - } - - @Test - public void testGetPhenotypeMatchesForNonExistentHpoTermReturnsEmptySet() { - PhenotypeTerm nonExistentTerm = new PhenotypeTerm("", "", 0d); - Set matches = instance.getPhenotypeMatchesForHpoTerm(nonExistentTerm); - assertThat(matches.isEmpty(), is(true)); - } - - @Test - public void testGetPhenotypeMatchesForHpoTerm() { - Set matches = instance.getPhenotypeMatchesForHpoTerm(multicysticKidneyDysplasia); - assertThat(matches.isEmpty(), is(false)); - assertThat(matches, equalTo(phenotypeMatches)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/MockTabixIterator.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/MockTabixIterator.java deleted file mode 100644 index e7a6edd56..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/MockTabixIterator.java +++ /dev/null @@ -1,57 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import htsjdk.tribble.readers.TabixReader; -import java.util.ArrayList; -import java.util.List; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Mocks the TabixIterator returned from the TabixReader.query() method to - * return a given set of values. - * - * @author Jules Jacobsen - */ -class MockTabixIterator implements TabixReader.Iterator { - - private static final Logger logger = LoggerFactory.getLogger(MockTabixIterator.class); - - private List values; - private int pos; - - MockTabixIterator() { - setUp(new ArrayList<>()); - } - - MockTabixIterator(List values) { - setUp(values); - } - - private void setUp(List values) { - this.values = values; - pos = 0; - } - - void setValues(List values) { - setUp(values); - } - - @Override - public String next() { - if (pos < values.size()) { - return values.get(pos++); - } - return null; - } - - @Override - public String toString() { - return "MockTabixIterator{" + "values=" + values + '}'; - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/RegulatoryFeatureDaoTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/RegulatoryFeatureDaoTest.java deleted file mode 100644 index 3faaa862b..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/RegulatoryFeatureDaoTest.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.RegulatoryFeature; - -import static de.charite.compbio.exomiser.core.model.RegulatoryFeature.FeatureType.*; - -import org.junit.Ignore; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.jdbc.Sql; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -import java.util.ArrayList; -import java.util.List; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.hasItem; -import static org.hamcrest.CoreMatchers.not; -import static org.junit.Assert.*; - -/** - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = DaoTestConfig.class) -@Sql(scripts = {"file:src/test/resources/sql/create_regulatory_features.sql", "file:src/test/resources/sql/regulatoryFeatureTestData.sql"}) -public class RegulatoryFeatureDaoTest { - - @Autowired - private RegulatoryFeatureDao instance; - - @Test - public void testGetAllRegulatoryFeatures() { - List regulatoryFeatures = new ArrayList<>(); - -// (11, 96762600, 96763399, 'Enhancer'), - regulatoryFeatures.add(new RegulatoryFeature(11, 96762600, 96763399, ENHANCER)); -// (11, 96798354, 96798827, 'FANTOM permissive'), - regulatoryFeatures.add(new RegulatoryFeature(11, 96798354, 96798827, FANTOM_PERMISSIVE)); -// (11, 96820460, 96821548, 'unrecognised type'); -// regulatoryFeatures.add(new RegulatoryFeature(11, 96820460, 96821548, UNKNOWN)); - - List results = instance.getRegulatoryFeatures(); - - assertThat(results.size(), equalTo(2)); - - for (RegulatoryFeature result : results) { - assertThat(regulatoryFeatures, hasItem(result)); - assertThat(result.getFeatureType(), not(RegulatoryFeature.FeatureType.UNKNOWN)); - } - } - -} \ No newline at end of file diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/RemmDaoTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/RemmDaoTest.java deleted file mode 100644 index 9955c252b..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/RemmDaoTest.java +++ /dev/null @@ -1,119 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.pathogenicity.RemmScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import htsjdk.tribble.readers.TabixReader; -import htsjdk.variant.variantcontext.VariantContext; -import java.io.IOException; -import java.util.Arrays; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mock; -import org.mockito.Mockito; -import org.mockito.runners.MockitoJUnitRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(MockitoJUnitRunner.class) -public class RemmDaoTest { - - private RemmDao instance; - - @Mock - private TabixReader remmTabixReader; - - private MockTabixIterator mockIterator; - - @Before - public void setUp() { - mockIterator = new MockTabixIterator(); - instance = new RemmDao(remmTabixReader); - } - - private static VariantEvaluation variant(int chr, int pos, String ref, String alt) { - if (ref.equals("-") || alt.equals("-")) { - //this is used to get round the fact that in real life the variant evaluation - //is built from a variantContext and some variantAnnotations - return new VariantEvaluation.VariantBuilder(chr, pos, ref, alt) - .variantContext(Mockito.mock(VariantContext.class)) - .build(); - } - return new VariantEvaluation.VariantBuilder(chr, pos, ref, alt).variantEffect(VariantEffect.REGULATORY_REGION_VARIANT).build(); - } - - @Test - public void testGetPathogenicityData_missenseVariant() { - //missense variants are by definition protein-coding and therefore cannot be non-coding so we expect nothing - VariantEvaluation missenseVariant = new VariantEvaluation.VariantBuilder(1, 1, "A", "T").variantEffect(VariantEffect.MISSENSE_VARIANT).build(); - assertThat(instance.getPathogenicityData(missenseVariant), equalTo(new PathogenicityData())); - } - - @Test - public void testGetPathogenicityData_unableToReadFromSource() { - Mockito.when(remmTabixReader.query("1:1-1")).thenThrow(IOException.class); - assertThat(instance.getPathogenicityData(variant(1, 1, "A", "T")), equalTo(new PathogenicityData())); - } - - @Test - public void testGetPathogenicityData_singleNucleotideVariationNoData() { - mockIterator.setValues(Arrays.asList()); - Mockito.when(remmTabixReader.query("1:1-1")).thenReturn(mockIterator); - - assertThat(instance.getPathogenicityData(variant(1, 1, "A", "T")), equalTo(new PathogenicityData())); - } - - @Test - public void testGetPathogenicityData_singleNucleotideVariation() { - mockIterator.setValues(Arrays.asList("1\t1\t1.0")); - Mockito.when(remmTabixReader.query("1:1-1")).thenReturn(mockIterator); - - assertThat(instance.getPathogenicityData(variant(1, 1, "A", "T")), equalTo(new PathogenicityData(new RemmScore(1f)))); - } - - @Test - public void testGetPathogenicityData_insertion() { - mockIterator.setValues(Arrays.asList("1\t1\t0.0", "1\t2\t1.0")); - Mockito.when(remmTabixReader.query("1:1-2")).thenReturn(mockIterator); - - assertThat(instance.getPathogenicityData(variant(1, 1, "-", "TTT")), equalTo(new PathogenicityData(new RemmScore(1f)))); - } - - @Test - public void testGetPathogenicityData_deletion() { - mockIterator.setValues(Arrays.asList("1\t1\t0.0", "1\t2\t0.5", "1\t3\t1.0")); - Mockito.when(remmTabixReader.query("1:1-4")).thenReturn(mockIterator); - - assertThat(instance.getPathogenicityData(variant(1, 1, "TTT", "-")), equalTo(new PathogenicityData(new RemmScore(1f)))); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/TadDaoTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/TadDaoTest.java deleted file mode 100644 index e378b0d39..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/dao/TadDaoTest.java +++ /dev/null @@ -1,90 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.dao; - -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.jdbc.Sql; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -import java.util.*; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.*; - -/** - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = DaoTestConfig.class) -@Sql(scripts = {"file:src/test/resources/sql/create_tad.sql", "file:src/test/resources/sql/tadDaoTestData.sql"}) -public class TadDaoTest { - - @Autowired - private TadDao instance; - - @Test - public void testGetAllTads() { - //some real TADS (cut short) - Map genes1 = new LinkedHashMap<>(); - genes1.put("ISG15", 9636); - genes1.put("TNFRSF4", 7293); - TopologicalDomain tad1 = new TopologicalDomain(1, 770137, 1250137, genes1); - - Map genes2 = new LinkedHashMap<>(); - genes2.put("MMP23B", 8510); - TopologicalDomain tad2 = new TopologicalDomain(1, 1250137, 1850140, genes2); - - Map genes3 = new LinkedHashMap<>(); - genes3.put("LBH", 81606); - genes3.put("LCLAT1", 253558); - genes3.put("YPEL5", 51646); - TopologicalDomain tad3 = new TopologicalDomain(2, 30346496, 30906496, genes3); - - //fictitious overlapping domains - these might occur. - Map genes4 = new LinkedHashMap<>(); - genes4.put("GENE1", 11111); - TopologicalDomain tad4 = new TopologicalDomain(2, 30346496, 30800000, genes4); - - Map genes5 = new LinkedHashMap<>(); - genes5.put("GENE2", 22222); - TopologicalDomain tad5 = new TopologicalDomain(2, 30200000, 30800000, genes5); - - Map genes6 = new LinkedHashMap<>(); - genes6.put("GENE3", 33333); - genes6.put("GENE4", 44444); - TopologicalDomain tad6 = new TopologicalDomain(2, 30100000, 30600000, genes6); - - List expected = new ArrayList<>(); - expected.add(tad1); - expected.add(tad2); - expected.add(tad3); - expected.add(tad4); - expected.add(tad5); - expected.add(tad6); - - assertThat(instance.getAllTads(), equalTo(expected)); - } - -} \ No newline at end of file diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/GeneFactoryTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/GeneFactoryTest.java deleted file mode 100644 index 31f1b4e75..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/GeneFactoryTest.java +++ /dev/null @@ -1,236 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.ArrayList; -import java.util.List; -import java.util.Set; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; - -import de.charite.compbio.jannovar.data.JannovarData; -import org.junit.Before; -import org.junit.Test; - -import static org.hamcrest.CoreMatchers.not; -import static org.junit.Assert.*; -import org.junit.runner.RunWith; -import org.mockito.Mock; -import org.mockito.Mockito; -import org.mockito.runners.MockitoJUnitRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(MockitoJUnitRunner.class) -public class GeneFactoryTest { - - private GeneFactory instance; - private List variantEvaluations; - - private static final String GENE1_GENE_SYMBOL = "GENE1"; - private static final int GENE1_GENE_ID = 123456; - - @Mock - private VariantEvaluation offTargetVariantEvaluation; - @Mock - private VariantEvaluation firstGene1VariantEvaluation; - @Mock - private VariantEvaluation secondGene1VariantEvaluation; - - private static final String GENE2_GENE_SYMBOL = "GENE2"; - private static final int GENE2_GENE_ID = 654321; - @Mock - private VariantEvaluation gene2VariantEvaluation; - - private static final String GENE3_GENE_SYMBOL = "GENE3"; - private static final int GENE3_GENE_ID = 9999999; - @Mock - private VariantEvaluation gene3VariantEvaluation; - @Mock - private VariantEvaluation variantEvaluationInTwoGeneRegions; - - - @Before - public void setUp() { - instance = new GeneFactory(); - variantEvaluations = new ArrayList<>(); - - Mockito.when(offTargetVariantEvaluation.getGeneSymbol()).thenReturn(null); - - Mockito.when(firstGene1VariantEvaluation.getGeneSymbol()).thenReturn(GENE1_GENE_SYMBOL); - Mockito.when(firstGene1VariantEvaluation.getEntrezGeneId()).thenReturn(GENE1_GENE_ID); - - Mockito.when(secondGene1VariantEvaluation.getGeneSymbol()).thenReturn(GENE1_GENE_SYMBOL); - Mockito.when(secondGene1VariantEvaluation.getEntrezGeneId()).thenReturn(GENE1_GENE_ID); - - Mockito.when(gene2VariantEvaluation.getGeneSymbol()).thenReturn(GENE2_GENE_SYMBOL); - Mockito.when(gene2VariantEvaluation.getEntrezGeneId()).thenReturn(GENE2_GENE_ID); - - //the variantEvaluation should only return the first gene symbol listed by Jannovar - see VariantEvaluationTest - Mockito.when(variantEvaluationInTwoGeneRegions.getGeneSymbol()).thenReturn(GENE3_GENE_SYMBOL); - Mockito.when(variantEvaluationInTwoGeneRegions.getEntrezGeneId()).thenReturn(GENE3_GENE_ID); - - Mockito.when(gene3VariantEvaluation.getGeneSymbol()).thenReturn(GENE3_GENE_SYMBOL); - Mockito.when(gene3VariantEvaluation.getEntrezGeneId()).thenReturn(GENE3_GENE_ID); - } - - private Gene createNewGene(String geneSymbol, int geneId, VariantEvaluation variantEvaluation) { - Gene gene = new Gene(geneSymbol, geneId); - gene.addVariant(variantEvaluation); - return gene; - } - - @Test - public void testGeneFactoryWillReturnAnEmptyResultFromAnEmptyInput() { - List emptyVariantEvaluations = new ArrayList<>(); - List emptyGenes = new ArrayList<>(); - - List result = instance.createGenes(emptyVariantEvaluations); - assertThat(result, equalTo(emptyGenes)); - } - - @Test - public void testOffTargetVariantReturnsNoGenes() { - variantEvaluations.add(offTargetVariantEvaluation); - - List emptyGenes = new ArrayList<>(); - - List result = instance.createGenes(variantEvaluations); - assertThat(result, equalTo(emptyGenes)); - } - - @Test - public void testOneOnTargetVariantReturnsSingleGene() { - - variantEvaluations.add(firstGene1VariantEvaluation); - - List genes = new ArrayList<>(); - Gene gene = createNewGene(GENE1_GENE_SYMBOL, GENE1_GENE_ID, firstGene1VariantEvaluation); - genes.add(gene); - - List result = instance.createGenes(variantEvaluations); - assertThat(result, equalTo(genes)); - } - - @Test - public void testTwoVariantsInSameGeneReturnsSingleGene() { - - variantEvaluations.add(firstGene1VariantEvaluation); - variantEvaluations.add(secondGene1VariantEvaluation); - - List genes = new ArrayList<>(); - genes.add(createNewGene(GENE1_GENE_SYMBOL, GENE1_GENE_ID, firstGene1VariantEvaluation)); - - List result = instance.createGenes(variantEvaluations); - assertThat(result, equalTo(genes)); - - Gene resultGene = result.get(0); - assertThat(resultGene.getGeneSymbol(), equalTo(GENE1_GENE_SYMBOL)); - assertThat(resultGene.getNumberOfVariants(), equalTo(variantEvaluations.size())); - } - - @Test - public void testTwoVariantsInDifferentGeneReturnsTwoGenes() { - - Gene gene1 = createNewGene(GENE1_GENE_SYMBOL, GENE1_GENE_ID, firstGene1VariantEvaluation); - variantEvaluations.add(firstGene1VariantEvaluation); - - Gene gene2 = createNewGene(GENE2_GENE_SYMBOL, GENE2_GENE_ID, gene2VariantEvaluation); - variantEvaluations.add(gene2VariantEvaluation); - - List result = instance.createGenes(variantEvaluations); - - assertThat(result.contains(gene1), is(true)); - assertThat(result.contains(gene2), is(true)); - } - - @Test - public void testVariantInTwoGeneRegionsReturnsSingleGene() { - - variantEvaluations.add(variantEvaluationInTwoGeneRegions); - - List genes = new ArrayList<>(); - genes.add(createNewGene(GENE3_GENE_SYMBOL, GENE3_GENE_ID, variantEvaluationInTwoGeneRegions)); - - List result = instance.createGenes(variantEvaluations); - assertThat(result, equalTo(genes)); - - } - - @Test - public void testVariantInTwoGeneRegionsReturnsSingleGeneWithFirstGeneSymbol() { - - variantEvaluations.add(variantEvaluationInTwoGeneRegions); - - List result = instance.createGenes(variantEvaluations); - - Gene resultGene = result.get(0); - System.out.println(resultGene); - assertThat(resultGene.getGeneSymbol(), equalTo(GENE3_GENE_SYMBOL)); - assertThat(resultGene.getNumberOfVariants(), equalTo(variantEvaluations.size())); - - } - - @Test - public void testThreeVariantsInTwoGeneRegionsReturnsTwoGenes() { - - variantEvaluations.add(variantEvaluationInTwoGeneRegions); - - Gene gene3 = createNewGene(GENE3_GENE_SYMBOL, GENE3_GENE_ID, gene3VariantEvaluation); - variantEvaluations.add(gene3VariantEvaluation); - - Gene gene2 = createNewGene(GENE2_GENE_SYMBOL, GENE2_GENE_ID, gene2VariantEvaluation); - variantEvaluations.add(gene2VariantEvaluation); - - - List result = instance.createGenes(variantEvaluations); - for (Gene gene : result) { - System.out.println(gene); - - } - assertThat(result.size(), equalTo(2)); - assertThat(result.contains(gene2), is(true)); - assertThat(result.contains(gene3), is(true)); - } - - @Test - public void testCreateKnownGenes() { - JannovarData jannovarData = TestFactory.buildDefaultJannovarData(); - Set knownGeneSymbols = jannovarData.getTmByGeneSymbol().keySet(); - - List knownGenes = instance.createKnownGenes(jannovarData); - assertThat(knownGenes.size(), equalTo(4)); - knownGenes.forEach(gene -> { - assertThat(gene.getEntrezGeneID(), not(equalTo(0))); - assertThat(gene.getGeneSymbol(), not(equalTo(""))); - assertThat(knownGeneSymbols.contains(gene.getGeneSymbol()), is(true)); - }); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/GeneTranscriptModelBuilder.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/GeneTranscriptModelBuilder.java deleted file mode 100644 index 4dd01ad65..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/GeneTranscriptModelBuilder.java +++ /dev/null @@ -1,95 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.jannovar.data.ReferenceDictionary; -import de.charite.compbio.jannovar.reference.*; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * @author Jules Jacobsen - */ -public class GeneTranscriptModelBuilder { - - private static final Logger logger = LoggerFactory.getLogger(GeneTranscriptModelBuilder.class); - - private static final ReferenceDictionary REF_DICT = HG19RefDictBuilder.build(); - - private final TranscriptModelBuilder builder; - private final int chr; - - public GeneTranscriptModelBuilder(String geneSymbol, String geneId, String accession, int chr, Strand strand, String mRnaTranscriptSequence) { - builder = new TranscriptModelBuilder(); - builder.setGeneSymbol(geneSymbol); - builder.setGeneID(geneId); - builder.setStrand(strand); - builder.setAccession(accession); - builder.setSequence(mRnaTranscriptSequence.toUpperCase()); - - this.chr = chr; - } - - public GeneTranscriptModelBuilder buildTxRegion(int start, int end) { - GenomeInterval tx = getZeroBasedFwdStrandInterval(chr, start, end); - builder.setTXRegion(tx); - return this; - } - - public GeneTranscriptModelBuilder buildCdsRegion(int start, int end) { - GenomeInterval cds = getZeroBasedFwdStrandInterval(chr, start, end); - builder.setCDSRegion(cds); - return this; - } - - public GeneTranscriptModelBuilder addExon(int start, int end) { - GenomeInterval exonRegion = getZeroBasedFwdStrandInterval(chr, start, end); - builder.addExonRegion(exonRegion); - return this; - } - - private GenomeInterval getZeroBasedFwdStrandInterval(int chr, int start, int end) { - return new GenomeInterval(REF_DICT, Strand.FWD, chr, start, end, PositionType.ZERO_BASED); - } - - public TranscriptModel build() { - if (builder.getTXRegion() == null) { - buildTxRegion(1, 1); - } - - if (builder.getCDSRegion() == null) { - buildCdsRegion(1, 1); - } - - if (builder.getExonRegions().isEmpty()) { - addExon(1, 1); - } - final int txStart = builder.getTXRegion().getBeginPos(); - final int txEnd = builder.getTXRegion().getEndPos(); - final int cdsStart = builder.getCDSRegion().getBeginPos(); - final int cdsEnd = builder.getCDSRegion().getEndPos(); - logger.info("Built TranscriptModel Gene={} accession={} Chr{} Strand={} seqLen={} txRegion={}-{}({} bases) CDS={}-{}({} bases) {} exons={}", builder.getGeneSymbol(), builder.getAccession(), builder.getCDSRegion().getChr(), - builder.getStrand(), builder.getSequence().length(), txStart, txEnd, txEnd - txStart, - cdsStart, cdsEnd, cdsEnd - cdsStart, - builder.getExonRegions().size(), builder.getExonRegions().stream().map(exon -> String.format("[%d-%d] ", exon.getBeginPos(), exon.getEndPos())).reduce("", (a, b) -> a + b)); - - return builder.build(); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/PedigreeFactoryTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/PedigreeFactoryTest.java deleted file mode 100644 index 85a73a94c..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/PedigreeFactoryTest.java +++ /dev/null @@ -1,170 +0,0 @@ - -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.factories.PedigreeFactory.PedigreeCreationException; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.jannovar.pedigree.Disease; -import de.charite.compbio.jannovar.pedigree.Pedigree; -import de.charite.compbio.jannovar.pedigree.Person; -import de.charite.compbio.jannovar.pedigree.Sex; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.Arrays; - -import org.junit.Before; -import org.junit.Test; - -import static org.hamcrest.CoreMatchers.*; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PedigreeFactoryTest { - - private PedigreeFactory instance; - - private static final Path validPedFilePath = Paths.get("src/test/resources/validPedTestFile.ped"); - private static final Path inValidPedFilePath = Paths.get("src/test/resources/invalidPedTestFile.ped"); - - private static final Person ADAM = new Person("Adam", null, null, Sex.MALE, Disease.UNAFFECTED); - private static final Person EVA = new Person("Eva", null, null, Sex.FEMALE, Disease.UNAFFECTED); - private static final Person SETH = new Person("Seth", ADAM, EVA, Sex.MALE, Disease.AFFECTED); - - @Before - public void setUp() { - instance = new PedigreeFactory(); - } - - private SampleData createSampleData(String... name) { - SampleData sampleData = new SampleData(); - sampleData.setSampleNames(Arrays.asList(name)); - sampleData.setNumberOfSamples(name.length); - return sampleData; - } - - - private void assertContainsPerson(Person expected, Pedigree pedigree) { - String name = expected.getName(); - assertThat(pedigree.hasPerson(name), is(true)); - Person person = pedigree.getNameToMember().get(name).getPerson(); - assertThat(person, equalTo(expected)); - } - - @Test(expected = PedigreeCreationException.class) - public void throwsErrorWhenSampleDataIsEmpty() { - SampleData emptySampleData = new SampleData(); - instance.createPedigreeForSampleData(null, emptySampleData); - } - - @Test - public void createsSingleSamplePedigreeWithDefaultNameWhenSampleHasNoNameOrPedFile() { - SampleData sampleData = new SampleData(); - sampleData.setNumberOfSamples(1); - - Pedigree result = instance.createPedigreeForSampleData(null, sampleData); - Person person = result.getMembers().get(0); - assertThat(person.getName(), equalTo(PedigreeFactory.DEFAULT_SAMPLE_NAME)); - } - - @Test - public void createsSingleSamplePedigreeWhenSampleHasOnlyOneNamedMemberAndNoPedFile() { - Pedigree result = instance.createPedigreeForSampleData(null, createSampleData("Adam")); - Person person = result.getMembers().get(0); - assertThat(person.getName(), equalTo("Adam")); - } - - @Test(expected = PedigreeCreationException.class) - public void throwsErrorWhenMultiSampleDataHasNoPedFile() { - instance.createPedigreeForSampleData(null, createSampleData("Adam", "Eve", "Cain", "Abel")); - } - - @Test(expected = PedigreeCreationException.class) - public void throwsErrorForNamedMultiSampleWithInvalidPedFile() { - instance.createPedigreeForSampleData(inValidPedFilePath, createSampleData("Adam", "Eva", "Seth")); - } - - @Test - public void createsPedigreeForNamedMultiSampleWithPedFile() { - Pedigree pedigree = instance.createPedigreeForSampleData(validPedFilePath, createSampleData("Adam", "Eva", "Seth")); - System.out.println(pedigree); - assertThat(pedigree.getMembers().size(), equalTo(3)); - assertContainsPerson(ADAM, pedigree); - assertContainsPerson(EVA, pedigree); - assertContainsPerson(SETH, pedigree); - } - - @Test - public void createsPedigreeForNamedMultiSampleWithPedFileWithDisorderedNames() { - Pedigree pedigree = instance.createPedigreeForSampleData(validPedFilePath, createSampleData("Adam", "Seth", "Eva")); - assertThat(pedigree.getMembers().size(), equalTo(3)); - assertContainsPerson(ADAM, pedigree); - assertContainsPerson(EVA, pedigree); - assertContainsPerson(SETH, pedigree); - } - - @Test - public void createsPedigreeForPedFileWithHeader() { - Pedigree pedigree = instance.createPedigreeForSampleData(Paths.get("src/test/resources/pedWithHeader.ped"), createSampleData("Adam", "Seth", "Eva")); - assertThat(pedigree.getMembers().size(), equalTo(3)); - assertContainsPerson(ADAM, pedigree); - assertContainsPerson(SETH, pedigree); - assertContainsPerson(EVA, pedigree); - } - - @Test(expected = PedigreeCreationException.class) - public void testCreatePedigreeWithMorePedigreeMembersThanSampleNames() { - instance.createPedigreeForSampleData(validPedFilePath, createSampleData("Eva", "Seth")); - } - - @Test(expected = PedigreeCreationException.class) - public void testCreatePedigreeWithMoreSampleNamesThanPedigreeMembers() { - instance.createPedigreeForSampleData(validPedFilePath, createSampleData("Adam", "Eva", "Cain", "Abel", "Seth")); - } - - @Test(expected = PedigreeCreationException.class) - public void testCreatePedigreeWithMoreSampleNamesThanPedigreeMembersAndMismatchedSample() { - instance.createPedigreeForSampleData(validPedFilePath, createSampleData("Adam", "Marge", "Abel", "Seth")); - } - - @Test(expected = PedigreeCreationException.class) - public void testCreatePedigreeWithMismatchedSampleNameAndPedigreeMember() { - instance.createPedigreeForSampleData(validPedFilePath, createSampleData("Adam", "Marge", "Seth")); - } - - @Test(expected = PedigreeCreationException.class) - public void testCreatePedigreeWithCompletelyMismatchedSampleNames() { - instance.createPedigreeForSampleData(validPedFilePath, createSampleData("Homer", "Marge", "Bart", "Lisa", "Maggie")); - } - - @Test(expected = PedigreeCreationException.class) - public void testCreatePedigreeWithSpacesInsteadOfTabs() { - instance.createPedigreeForSampleData(Paths.get("src/test/resources/malformedPedTestFileWithSpaces.ped"), createSampleData("Adam", "Eva", "Seth")); - } - - @Test(expected = PedigreeCreationException.class) - public void testCreatePedigreeWithMoreThanOneFamilyInFile() { - instance.createPedigreeForSampleData(Paths.get("src/test/resources/multiFamilyTest.ped"), createSampleData("Adam", "Eva", "Seth")); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryStub.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryStub.java deleted file mode 100644 index f336cd0d7..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryStub.java +++ /dev/null @@ -1,26 +0,0 @@ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.SampleData; - -import java.nio.file.Path; - -/** - * Stub class for testing purposes. - * - * @author Jules Jacobsen - */ -public class SampleDataFactoryStub extends SampleDataFactory { - - /** - * Will return an empty SampleData with the VCF and PED file paths set to those supplied. - * - * @param vcfFilePath - * @param pedigreeFilePath - * @return - */ - @Override - public SampleData createSampleData(Path vcfFilePath, Path pedigreeFilePath) { - return new SampleData(vcfFilePath, pedigreeFilePath); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryTest.java deleted file mode 100644 index f9abf9e56..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryTest.java +++ /dev/null @@ -1,105 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.jannovar.pedigree.Pedigree; - -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.List; - -import static org.hamcrest.CoreMatchers.*; -import static org.junit.Assert.assertThat; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = SampleDataFactoryTestConfig.class) -public class SampleDataFactoryTest { - - @Autowired - private SampleDataFactory instance; - - @Test(expected = NullPointerException.class) - public void testNullVcfThrowsANullPointer() { - Path pedPath = Paths.get("ped"); - instance.createSampleData(null, pedPath); - } - - @Test - public void createsSampleDataWithSingleSampleVcfAndNoPedFile() { - Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); - SampleData sampleData = instance.createSampleData(vcfPath, null); - - String sampleName = "manuel"; - List sampleNames = new ArrayList<>(); - sampleNames.add(sampleName); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree(sampleName); - - assertThat(sampleData, notNullValue()); - assertThat(sampleData.getVcfPath(), equalTo(vcfPath)); - assertThat(sampleData.getSampleNames(), equalTo(sampleNames)); - assertThat(sampleData.getNumberOfSamples(), equalTo(1)); - assertThat(sampleData.getPedigree().getMembers().get(0), equalTo(pedigree.getMembers().get(0))); - assertThat(sampleData.getVariantEvaluations().isEmpty(), is(false)); - assertThat(sampleData.getVariantEvaluations().size(), equalTo(3)); - assertThat(sampleData.getGenes().isEmpty(), is(false)); - } - - @Test - public void returnsEmptySampleDataFromEmptyVcfFileAndNullPedFile() { - Path vcfPath = Paths.get("src/test/resources/headerOnly.vcf"); - SampleData sampleData = instance.createSampleData(vcfPath, null); - - String sampleName = "manuel"; - List sampleNames = new ArrayList<>(); - sampleNames.add(sampleName); - - Pedigree pedigree = Pedigree.constructSingleSamplePedigree(sampleName); - - assertThat(sampleData, notNullValue()); - assertThat(sampleData.getVcfPath(), equalTo(vcfPath)); - assertThat(sampleData.getSampleNames(), equalTo(sampleNames)); - assertThat(sampleData.getNumberOfSamples(), equalTo(1)); - assertThat(sampleData.getPedigree().getMembers().get(0), equalTo(pedigree.getMembers().get(0))); - assertThat(sampleData.getVariantEvaluations().isEmpty(), is(true)); - assertThat(sampleData.getVariantEvaluations().size(), equalTo(0)); - assertThat(sampleData.getGenes().isEmpty(), is(true)); - } - - @Test(expected = RuntimeException.class) - public void throwsErrorWithNonVcfPathAndNullPedFile() { - Path vcfPath = Paths.get(""); - instance.createSampleData(vcfPath, null); - } - - @Test(expected = RuntimeException.class) - public void throwsErrorWithNonVcfFileAndNullPedFile() { - Path vcfPath = Paths.get("src/test/resources/invalidPedTestFile.ped"); - instance.createSampleData(vcfPath, null); - } - - @Test - public void testGetVariantFactory() { - assertThat(instance.getVariantFactory(), notNullValue()); - } - - @Test - public void testCreateKnownGenes() { - assertThat(instance.createKnownGenes().size(), equalTo(4)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryTestConfig.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryTestConfig.java deleted file mode 100644 index 83d4bab43..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/SampleDataFactoryTestConfig.java +++ /dev/null @@ -1,61 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; - -/** - * - * @author Jules Jacobsen - */ -@Configuration -public class SampleDataFactoryTestConfig { - - @Bean - public SampleDataFactory SampleDataFactory() { - return new SampleDataFactory(); - } - - @Bean - public JannovarData jannovarData() { - return TestFactory.buildDefaultJannovarData(); - } - - @Bean - public VariantAnnotator variantAnnotator() { - JannovarData jannovarData = jannovarData(); - VariantContextAnnotator variantContextAnnotator = new VariantContextAnnotator(jannovarData.getRefDict(), jannovarData.getChromosomes()); - return new VariantAnnotator(variantContextAnnotator); - } - - @Bean - public VariantFactory variantFactory() { - return new VariantFactory(variantAnnotator()); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestFactory.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestFactory.java deleted file mode 100644 index bd8f79518..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestFactory.java +++ /dev/null @@ -1,90 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.factories; - -import com.google.common.collect.ImmutableList; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.data.ReferenceDictionary; -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; -import de.charite.compbio.jannovar.reference.TranscriptModel; - -/** - * Allows the easy creation of {@link JannovarData} {@link VariantFactory} and {@link SampleDataFactory} objects for testing. - * - * The default data contains one transcript each for the genes FGFR2, GNRHR2A, RBM8A (overlaps with GNRHR2A), and SHH based on the HG19/GRCh37 build. - * - * @author Jules Jacobsen - */ -public class TestFactory { - - private static final ReferenceDictionary DEFAULT_REF_DICT = HG19RefDictBuilder.build(); - - private static final TranscriptModel tmFGFR2 = TestTranscriptModelFactory.buildTMForFGFR2(); - private static final TranscriptModel tmGNRHR2A = TestTranscriptModelFactory.buildTMForGNRHR2A(); - private static final TranscriptModel tmRBM8A = TestTranscriptModelFactory.buildTMForRBM8A(); - private static final TranscriptModel tmSHH = TestTranscriptModelFactory.buildTMForSHH(); - - private static final JannovarData DEFAULT_JANNOVAR_DATA = new JannovarData(DEFAULT_REF_DICT, ImmutableList.of(tmFGFR2, tmGNRHR2A, tmRBM8A, tmSHH)); - private static final VariantFactory DEFAULT_VARIANT_FACTORY = new VariantFactory(DEFAULT_JANNOVAR_DATA); - private static final SampleDataFactory DEFAULT_SAMPLE_DATA_FACTORY = new SampleDataFactory(buildDefaultVariantFactory(), DEFAULT_JANNOVAR_DATA); - - private TestFactory() { - //this class should be used in a static context. - } - - public static ReferenceDictionary getDefaultRefDict() { - return DEFAULT_REF_DICT; - } - - public static JannovarData buildDefaultJannovarData() { - return DEFAULT_JANNOVAR_DATA; - } - public static VariantFactory buildDefaultVariantFactory() { - return DEFAULT_VARIANT_FACTORY; - } - - public static SampleDataFactory buildDefaultSampleDataFactory() { - return DEFAULT_SAMPLE_DATA_FACTORY; - } - - public static JannovarData buildJannovarData(TranscriptModel... transcriptModels) { - return new JannovarData(DEFAULT_REF_DICT, ImmutableList.copyOf(transcriptModels)); - } - - public static VariantFactory buildVariantFactory(TranscriptModel... transcriptModels) { - final JannovarData jannovarData = buildJannovarData(transcriptModels); - return new VariantFactory(jannovarData); - } - - public static VariantFactory buildVariantFactory(JannovarData jannovarData) { - return new VariantFactory(jannovarData); - } - - public static SampleDataFactory buildSampleDataFactory(TranscriptModel... transcriptModels) { - final JannovarData jannovarData = buildJannovarData(transcriptModels); - return new SampleDataFactory(buildVariantFactory(jannovarData), jannovarData); - } - - public static SampleDataFactory buildSampleDataFactory(JannovarData jannovarData) { - return new SampleDataFactory(buildVariantFactory(jannovarData), jannovarData); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestVariantFactory.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestVariantFactory.java deleted file mode 100644 index 7d5c095ef..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestVariantFactory.java +++ /dev/null @@ -1,153 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import htsjdk.variant.variantcontext.Allele; -import htsjdk.variant.variantcontext.GenotypeBuilder; -import htsjdk.variant.variantcontext.VariantContext; -import htsjdk.variant.variantcontext.VariantContextBuilder; - -import java.util.Arrays; - -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.annotation.Annotation; -import de.charite.compbio.jannovar.annotation.InvalidGenomeVariant; -import de.charite.compbio.jannovar.annotation.VariantAnnotations; -import de.charite.compbio.jannovar.annotation.builders.AnnotationBuilderDispatcher; -import de.charite.compbio.jannovar.annotation.builders.AnnotationBuilderOptions; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.data.ReferenceDictionary; -import de.charite.compbio.jannovar.pedigree.Genotype; -import de.charite.compbio.jannovar.reference.GenomePosition; -import de.charite.compbio.jannovar.reference.GenomeVariant; -import de.charite.compbio.jannovar.reference.PositionType; -import de.charite.compbio.jannovar.reference.Strand; -import de.charite.compbio.jannovar.reference.TranscriptModel; - -/** - * Helper class for constructing {@link Variant} objects for tests. - * - * The construction of {@link Variant} objects is quite complex but for tests, - * we would ideally have them for testing our data sets. This class helps us - * with the construction. - */ -public class TestVariantFactory { - - private final ReferenceDictionary refDict = TestFactory.getDefaultRefDict(); - private final VariantFactory variantFactory = TestFactory.buildDefaultVariantFactory(); - - private final TranscriptModel tmFGFR2 = TestTranscriptModelFactory.buildTMForFGFR2(); - private final TranscriptModel tmSHH = TestTranscriptModelFactory.buildTMForSHH(); - - /** - * Construct a new {@link Variant} object with the given values. - * - * @param chrom numeric chromosome id - * @param pos zero-based position of the variant - * @param ref reference string - * @param alt alt string - * @param gt the Genotype to use - * @param readDepth depth the read depth to use - * @param altAlleleID alternative allele ID - * @param qual phred-scale quality - * @return {@link Variant} with the setting - */ - public VariantEvaluation constructVariant(int chrom, int pos, String ref, String alt, Genotype gt, int readDepth, int altAlleleID, double qual) { - VariantContext variantContext = constructVariantContext(chrom, pos, ref, alt, gt, readDepth, qual); - VariantAnnotations annotations = buildVariantAnnotations(chrom, pos, ref, alt); - - return variantFactory.buildAnnotatedVariantEvaluation(variantContext, altAlleleID, annotations); - } - - private VariantAnnotations buildVariantAnnotations(int chrom, int pos, String ref, String alt) { - // build annotation list (for the one transcript we have below only) - final GenomePosition genomePosition = new GenomePosition(refDict, Strand.FWD, chrom, pos, PositionType.ZERO_BASED); - final GenomeVariant genomeVariant = new GenomeVariant(genomePosition, ref, alt); - final AnnotationBuilderDispatcher dispatcher; - if (tmFGFR2.getTXRegion().contains(genomePosition)) { - dispatcher = new AnnotationBuilderDispatcher(tmFGFR2, genomeVariant, new AnnotationBuilderOptions()); - } else if (tmSHH.getTXRegion().contains(genomePosition)) { - dispatcher = new AnnotationBuilderDispatcher(tmSHH, genomeVariant, new AnnotationBuilderOptions()); - } else { - dispatcher = new AnnotationBuilderDispatcher(null, genomeVariant, new AnnotationBuilderOptions()); - } - final VariantAnnotations annotations; - try { - Annotation anno = dispatcher.build(); - if (anno != null) { - annotations = new VariantAnnotations(genomeVariant, Arrays.asList(anno)); - } else { - annotations = new VariantAnnotations(genomeVariant, Arrays.asList()); - } - } catch (InvalidGenomeVariant e) { - throw new RuntimeException("Problem building annotation", e); - } - return annotations; - } - - public Variant constructVariant(int chrom, int pos, String ref, String alt, Genotype gt, int rd, int altAlleleID) { - return constructVariant(chrom, pos, ref, alt, gt, rd, altAlleleID, 20.0); - } - - public VariantContext constructVariantContext(int chrom, int pos, String ref, String alt, Genotype gt, int readDepth) { - return constructVariantContext(chrom, pos, ref, alt, gt, readDepth, 20.0); - } - - public VariantContext constructVariantContext(int chrom, int pos, String ref, String alt, Genotype gt, int readDepth, double qual) { - Allele refAllele = Allele.create(ref, true); - Allele altAllele = Allele.create(alt); - VariantContextBuilder vcBuilder = new VariantContextBuilder(); - - // build Genotype - GenotypeBuilder gtBuilder = new GenotypeBuilder("sample"); - setGenotype(gtBuilder, refAllele, altAllele, gt); - gtBuilder.attribute("RD", readDepth); - // System.err.println(gtBuilder.make().toString()); - - // build VariantContext - vcBuilder.loc("chr" + chrom, pos + 1, pos + ref.length()); - vcBuilder.alleles(Arrays.asList(refAllele, altAllele)); - vcBuilder.genotypes(gtBuilder.make()); - vcBuilder.attribute("RD", readDepth); - vcBuilder.log10PError(-0.1 * qual); - // System.err.println(vcBuilder.make().toString()); - - return vcBuilder.make(); - } - - private void setGenotype(GenotypeBuilder gtb, Allele refAllele, Allele altAllele, Genotype gt) { - switch (gt) { - case HOMOZYGOUS_ALT: - gtb.alleles(Arrays.asList(altAllele, altAllele)); - break; - case HOMOZYGOUS_REF: - gtb.alleles(Arrays.asList(refAllele, refAllele)); - break; - case HETEROZYGOUS: - gtb.alleles(Arrays.asList(refAllele, altAllele)); - break; - default: - break; - } - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantAnnotatorTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantAnnotatorTest.java deleted file mode 100644 index 531ae134d..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantAnnotatorTest.java +++ /dev/null @@ -1,138 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import de.charite.compbio.jannovar.pedigree.Genotype; -import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; -import de.charite.compbio.jannovar.reference.TranscriptModel; -import htsjdk.variant.variantcontext.VariantContext; - -import java.util.List; - -import static org.hamcrest.CoreMatchers.equalTo; - -import org.junit.Before; -import org.junit.Test; - -import static org.hamcrest.CoreMatchers.notNullValue; -import static org.junit.Assert.*; - -import com.google.common.collect.ImmutableList; -import com.google.common.collect.ImmutableSortedSet; -import de.charite.compbio.jannovar.annotation.Annotation; -import de.charite.compbio.jannovar.annotation.VariantAnnotations; -import static org.hamcrest.CoreMatchers.is; - -/** - * - * @author Jules Jacobsen - */ -public class VariantAnnotatorTest { - - private final TestVariantFactory varFactory = new TestVariantFactory(); - private final TranscriptModel tmFGFR2 = TestTranscriptModelFactory.buildTMForFGFR2(); - private final TranscriptModel tmSHH = TestTranscriptModelFactory.buildTMForSHH(); - private final JannovarData jannovarData = TestFactory.buildJannovarData(tmFGFR2, tmSHH); - - private VariantAnnotator instance = new VariantAnnotator(jannovarData); - - @Test - public void alternateConstructor() { - VariantContextAnnotator variantContextAnnotator = new VariantContextAnnotator(jannovarData.getRefDict(), jannovarData.getChromosomes()); - VariantAnnotator alternateConstructorInstance = new VariantAnnotator(variantContextAnnotator); - assertThat(alternateConstructorInstance, notNullValue()); - } - - @Test(expected = NullPointerException.class) - public void testAnnotationOfNullThrowsNullPointer() throws Exception { - instance.buildVariantAnnotations(null); - } - - @Test - public void testIntergenicAnnotationNoNeighbour() { - // intergenic variants should have empty annotation lists if there is no neighbouring gene - VariantContext vc = varFactory.constructVariantContext(2, 2, "A", "T", Genotype.HETEROZYGOUS, 30); - - List vars = instance.buildVariantAnnotations(vc); - VariantAnnotations variant = vars.get(0); - List annotationList = variant.getAnnotations(); - //these are equivalent assertions - assertThat(vars.size(), equalTo(1)); - assertThat(variant.hasAnnotation(), is(false)); - assertThat(annotationList.isEmpty(), is(true)); - } - - @Test - public void testIntergenicAnnotationWithNeighbour() { - // intergenic variants should have an entry for neighbouring genes - VariantContext vc = varFactory.constructVariantContext(10, 2, "A", "T", Genotype.HETEROZYGOUS, 30); - - List vars = instance.buildVariantAnnotations(vc); - VariantAnnotations variant = vars.get(0); - List annotationList = variant.getAnnotations(); - Annotation annotation = annotationList.get(0); - - assertThat(vars.size(), equalTo(1)); - assertThat(annotationList.size(), equalTo(1)); - assertThat(annotation.getEffects(), equalTo(ImmutableSortedSet.of(VariantEffect.INTERGENIC_VARIANT))); - assertThat(annotation.getTranscript(), equalTo(tmFGFR2)); - } - - @Test - public void testExonicAnnotationInFGFR2Gene() { - // a variant in the FGFR2 gene should be annotated correctly - VariantContext vc = varFactory.constructVariantContext(10, 123353320, "A", "T", Genotype.HETEROZYGOUS, 30); - - List vars = instance.buildVariantAnnotations(vc); - VariantAnnotations variant = vars.get(0); - List annotationList = variant.getAnnotations(); - Annotation annotation = annotationList.get(0); - - assertThat(vars.size(), equalTo(1)); - assertThat(annotationList.size(), equalTo(1)); - assertThat(annotation.getEffects(), equalTo(ImmutableSortedSet.of(VariantEffect.STOP_GAINED))); - assertThat(annotation.getTranscript(), equalTo(tmFGFR2)); - } - - @Test - public void testExonicAnnotationInSHHGene() { - // a variant in the SHH gene should be annotated correctly - VariantContext vc = varFactory.constructVariantContext(7, 155604810, "A", "T", Genotype.HETEROZYGOUS, 30); - - List vars = instance.buildVariantAnnotations(vc); - VariantAnnotations variant = vars.get(0); - List annotationList = variant.getAnnotations(); - Annotation annotation = annotationList.get(0); - - assertThat(vars.size(), equalTo(1)); - assertThat(annotationList.size(), equalTo(1)); - assertThat(annotation.getEffects(), equalTo(ImmutableSortedSet.of(VariantEffect.SYNONYMOUS_VARIANT))); - assertThat(annotation.getTranscript(), equalTo(tmSHH)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantContextBuilder.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantContextBuilder.java deleted file mode 100644 index 8d35d85b5..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantContextBuilder.java +++ /dev/null @@ -1,71 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.factories; - -import htsjdk.variant.variantcontext.VariantContext; -import htsjdk.variant.vcf.VCFCodec; -import htsjdk.variant.vcf.VCFHeader; -import htsjdk.variant.vcf.VCFHeaderVersion; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -import java.util.Arrays; -import java.util.HashSet; -import java.util.List; - -import static java.util.stream.Collectors.toList; - -/** - * Utility class for making variants for testing purposes. This removes the requirement for having to use actual VCF - * files as the variants can be specified locally in the code when required. - * - * @author Jules Jacobsen - */ -public class VariantContextBuilder { - - private static final Logger logger = LoggerFactory.getLogger(VariantContextBuilder.class); - - private final VCFCodec vcfCodec; - - public VariantContextBuilder(String... sampleNames) { - vcfCodec = new VCFCodec(); - VCFHeader header = new VCFHeader(new HashSet<>(), Arrays.asList(sampleNames)); - vcfCodec.setVCFHeader(header, VCFHeaderVersion.VCF4_1); - } - - /** - * Accepts a VCF formatted string either tab separated or using spaces in place of tabs to produce a VariantContext. - * Single sample: "1 123256213 . CA CC 0 . . GT 1/1" - * MultiSample examples: - * Single variation: "1 123256213 . CA CC 0 . . GT 1/1 0/1" - * Multi variantion: "1 123256213 . CA CC,CT 0 . . GT 1/1 1/2" - * - * @param vcfLine - * @return - */ - public VariantContext build(String vcfLine) { - vcfLine = vcfLine.replaceAll("[ ]+", "\t"); - return vcfCodec.decode(vcfLine); - } - - public List build(String... vcfLines) { - return Arrays.stream(vcfLines).map(vcfLine -> build(vcfLine)).collect(toList()); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceImplTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceImplTest.java deleted file mode 100644 index d1c08263e..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceImplTest.java +++ /dev/null @@ -1,225 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.dao.*; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.RegulatoryFeature; -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.VariantEvaluation.VariantBuilder; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.CaddScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.MutationTasterScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.RemmScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.SiftScore; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import static de.charite.compbio.jannovar.annotation.VariantEffect.REGULATORY_REGION_VARIANT; -import java.util.Arrays; -import java.util.Collections; -import java.util.EnumSet; -import java.util.List; -import java.util.Map; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.notNullValue; -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.Ignore; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.InjectMocks; -import org.mockito.Mock; -import org.mockito.Mockito; -import org.mockito.MockitoAnnotations; -import org.mockito.runners.MockitoJUnitRunner; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(MockitoJUnitRunner.class) -public class VariantDataServiceImplTest { - - @InjectMocks - private VariantDataServiceImpl instance; - @Mock - private FrequencyDao mockFrequencyDao; - @Mock - private PathogenicityDao mockPathogenicityDao; - @Mock - private RemmDao mockRemmDao; - @Mock - private CaddDao mockCaddDao; - @Mock - private RegulatoryFeatureDao mockRegulatoryFeatureDao; - @Mock - private TadDao mockTadDao; - - private static final Logger logger = LoggerFactory.getLogger(VariantDataServiceImplTest.class); - - private static final PathogenicityData PATH_DATA = new PathogenicityData(new PolyPhenScore(1), new MutationTasterScore(1), new SiftScore(0)); - private static final FrequencyData FREQ_DATA = new FrequencyData(new RsId(1234567), new Frequency(100.0f, FrequencySource.ESP_AFRICAN_AMERICAN)); - private static final PathogenicityData CADD_DATA = new PathogenicityData(new CaddScore(1)); - private static final VariantEffect REGULATORY_REGION = VariantEffect.REGULATORY_REGION_VARIANT; - - private VariantEvaluation variant; - private static final VariantBuilder variantBuilder = new VariantBuilder(1, 1, "A", "T"); - - @Before - public void setUp() { - variant = buildVariantOfType(VariantEffect.MISSENSE_VARIANT); - Map allGenes = Collections.EMPTY_MAP; - Mockito.when(mockPathogenicityDao.getPathogenicityData(variant)).thenReturn(PATH_DATA); - Mockito.when(mockFrequencyDao.getFrequencyData(variant)).thenReturn(FREQ_DATA); - Mockito.when(mockCaddDao.getPathogenicityData(variant)).thenReturn(CADD_DATA); - } - - private static VariantEvaluation buildVariantOfType(VariantEffect variantEffect) { - return variantBuilder.variantEffect(variantEffect).build(); - } - - @Test - public void testInstanceIsNotNull() { - assertThat(instance, notNullValue()); - } - - /* - * Ignore until sort out how VariantDataService should behave for CADD vs - * PathogenictyFilter swithc - */ - @Test - public void serviceReturnsPathogenicityDataForVariant() { - PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.POLYPHEN, PathogenicitySource.MUTATION_TASTER, PathogenicitySource.SIFT)); - assertThat(result, equalTo(PATH_DATA)); - } - - @Test - public void serviceReturnsEmptyPathogenicityDataForVariantWhenNoSourcesAreDefined() { - PathogenicityData result = instance.getVariantPathogenicityData(variant, Collections.emptySet()); - assertThat(result, equalTo(new PathogenicityData())); - } - - @Test - public void serviceReturnsSpecifiedPathogenicityDataForMissenseVariant() { - variant = buildVariantOfType(VariantEffect.MISSENSE_VARIANT); - PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.POLYPHEN)); - assertThat(result, equalTo(new PathogenicityData(new PolyPhenScore(1f)))); - } - - @Test - public void serviceReturnsCaddDataForMissenseVariant() { - variant = buildVariantOfType(VariantEffect.MISSENSE_VARIANT); - PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.CADD)); - assertThat(result, equalTo(CADD_DATA)); - } - - @Test - public void serviceReturnsCaddAndStandardMissenseDescriptorDataForMissenseVariant() { - variant = buildVariantOfType(VariantEffect.MISSENSE_VARIANT); - PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.CADD, PathogenicitySource.POLYPHEN)); - - assertThat(result, equalTo(new PathogenicityData(new PolyPhenScore(1f), new CaddScore(1f)))); - } - - @Test - public void serviceReturnsSpecifiedPathogenicityDataForKnownNonCodingVariant() { - variant = buildVariantOfType(VariantEffect.REGULATORY_REGION_VARIANT); - PathogenicityData expectedNcdsData = new PathogenicityData(new RemmScore(1f)); - Mockito.when(mockRemmDao.getPathogenicityData(variant)).thenReturn(expectedNcdsData); - PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.REMM)); - assertThat(result, equalTo(expectedNcdsData)); - } - - @Test - public void serviceReturnsSpecifiedPathogenicityDataForNonCodingNonRegulatoryVariant() { - variant = buildVariantOfType(VariantEffect.SPLICE_REGION_VARIANT); - //Test that the REMM DAO is only called whe the variant type is of the type REMM is trained against. - Mockito.when(mockRemmDao.getPathogenicityData(variant)).thenReturn(new PathogenicityData(new RemmScore(1f))); - PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.REMM)); - assertThat(result, equalTo(new PathogenicityData())); - } - - @Test - public void serviceReturnsCaddAndNonCodingScoreForKnownNonCodingVariant() { - variant = buildVariantOfType(VariantEffect.REGULATORY_REGION_VARIANT); - PathogenicityData expectedNcdsData = new PathogenicityData(new CaddScore(1f), new RemmScore(1f)); - Mockito.when(mockRemmDao.getPathogenicityData(variant)).thenReturn(expectedNcdsData); - PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.CADD, PathogenicitySource.REMM)); - assertThat(result, equalTo(expectedNcdsData)); - } - - @Test - public void serviceReturnsEmptyFrequencyDataWithRsIdForVariantWhenNoSourcesAreDefined() { - FrequencyData result = instance.getVariantFrequencyData(variant, Collections.emptySet()); - assertThat(result, equalTo(new FrequencyData(new RsId(1234567)))); - } - - @Test - public void serviceReturnsFrequencyDataForVariant() { - FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.allOf(FrequencySource.class)); - assertThat(result, equalTo(FREQ_DATA)); - } - - @Test - public void serviceReturnsSpecifiedFrequencyDataForVariant() { - FrequencyData frequencyData = new FrequencyData(new RsId(234567), new Frequency(1f, FrequencySource.ESP_AFRICAN_AMERICAN), new Frequency(1f, FrequencySource.ESP_EUROPEAN_AMERICAN)); - Mockito.when(mockFrequencyDao.getFrequencyData(variant)).thenReturn(frequencyData); - - FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.of(FrequencySource.ESP_AFRICAN_AMERICAN)); - assertThat(result, equalTo(new FrequencyData(new RsId(234567), new Frequency(1f, FrequencySource.ESP_AFRICAN_AMERICAN)))); - } - - @Test - public void serviceReturnsEmptyFrequencyDataWhenSpecifiedFrequencyDataIsUnavailable() { - FrequencyData frequencyData = new FrequencyData(); - Mockito.when(mockFrequencyDao.getFrequencyData(variant)).thenReturn(frequencyData); - - FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.of(FrequencySource.LOCAL)); - assertThat(result, equalTo(new FrequencyData())); - } - - @Test - public void serviceReturnsRegulatoryFeatures() { - List regulatoryFeatures = Arrays.asList(new RegulatoryFeature(1, 10, 100, RegulatoryFeature.FeatureType.ENHANCER)); - Mockito.when(mockRegulatoryFeatureDao.getRegulatoryFeatures()).thenReturn(regulatoryFeatures); - - List result = instance.getRegulatoryFeatures(); - assertThat(result, equalTo(regulatoryFeatures)); - } - - @Test - public void serviceReturnsTopologicalDomains(){ - List tads = Arrays.asList(new TopologicalDomain(1, 1, 2, Collections.emptyMap())); - Mockito.when(mockTadDao.getAllTads()).thenReturn(tads); - - List topologicalDomains = instance.getTopologicallyAssociatedDomains(); - assertThat(topologicalDomains, equalTo(tads)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceMock.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceMock.java deleted file mode 100644 index 52a607b16..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceMock.java +++ /dev/null @@ -1,131 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.RegulatoryFeature; -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; - -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Set; - -/** - * Mock of VariantDataService to provide canned responses for variants. Enables - * testing of the service without requiring any database back-end. This is - * backed by maps mapping the variants to their respective - * frequency/pathogenicity/whatever data. - * - * @author Jules Jacobsen - */ -public class VariantDataServiceMock extends VariantDataServiceImpl { - - private final Map expectedFrequencyData; - private final Map expectedPathogenicityData; - private final List expectedRegulatoryRegions; - private final List expectedTopologicalDomains; - - public VariantDataServiceMock() { - this.expectedFrequencyData = new HashMap<>(); - this.expectedPathogenicityData = new HashMap<>(); - this.expectedRegulatoryRegions = new ArrayList<>(); - this.expectedTopologicalDomains = new ArrayList<>(); - } - - public VariantDataServiceMock(Map expectedFrequencyData, Map expectedPathogenicityData, List expectedRegulatoryRegions, List expectedTopologicalDomains) { - this.expectedFrequencyData = expectedFrequencyData; - this.expectedPathogenicityData = expectedPathogenicityData; - this.expectedRegulatoryRegions = expectedRegulatoryRegions; - this.expectedTopologicalDomains = expectedTopologicalDomains; - } - - /** - * Adds the expected FrequencyData for the given Variant to the - * VariantDataService. - * - * @param variant - * @param frequencyData - */ - public void put(Variant variant, FrequencyData frequencyData) { - expectedFrequencyData.put(variant, frequencyData); - } - - /** - * Adds the expected PathogenicityData for the given Variant to the - * VariantDataService. - * - * @param variant - * @param pathogenicityData - */ - public void put(Variant variant, PathogenicityData pathogenicityData) { - expectedPathogenicityData.put(variant, pathogenicityData); - } - - /** - * Adds the expected RegulatoryFeature to the VariantDataService. - * - * @param regulatoryFeature - */ - public void put(RegulatoryFeature regulatoryFeature) { - expectedRegulatoryRegions.add(regulatoryFeature); - } - - /** - * Adds the expected TopologicalDomain to the VariantDataService. - * - * @param topologicalDomain - */ - public void put(TopologicalDomain topologicalDomain) { - expectedTopologicalDomains.add(topologicalDomain); - } - - @Override - public FrequencyData getVariantFrequencyData(Variant variant, Set frequencySources) { - FrequencyData allFrequencyData = expectedFrequencyData.getOrDefault(variant, new FrequencyData()); - return frequencyDataFromSpecifiedSources(allFrequencyData, frequencySources); - } - - @Override - public PathogenicityData getVariantPathogenicityData(Variant variant, Set pathogenicitySources) { - PathogenicityData pathData = expectedPathogenicityData.getOrDefault(variant, new PathogenicityData()); - return pathDataFromSpecifiedDataSources(pathData.getPredictedPathogenicityScores(), pathogenicitySources); - } - - @Override - public List getRegulatoryFeatures() { - return expectedRegulatoryRegions; - } - - @Override - public List getTopologicallyAssociatedDomains() { - return expectedTopologicalDomains; - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceStub.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceStub.java deleted file mode 100644 index 31300837b..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantDataServiceStub.java +++ /dev/null @@ -1,66 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.RegulatoryFeature; -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.jannovar.annotation.VariantEffect; - -import java.util.Collections; -import java.util.List; -import java.util.Set; - -/** - * - * @author Jules Jacobsen - */ -public class VariantDataServiceStub implements VariantDataService { - - @Override - public FrequencyData getVariantFrequencyData(Variant variant, Set frequencySources) { - return new FrequencyData(null, Collections.emptySet()); - } - - @Override - public PathogenicityData getVariantPathogenicityData(Variant variant, Set pathogenicitySources) { - return new PathogenicityData(Collections.emptySet()); - } - - @Override - public List getRegulatoryFeatures() { - return Collections.emptyList(); - } - - @Override - public List getTopologicallyAssociatedDomains() { - return Collections.emptyList(); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantFactoryStub.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantFactoryStub.java deleted file mode 100644 index a25a47822..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantFactoryStub.java +++ /dev/null @@ -1,54 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.factories; - -import com.google.common.collect.ImmutableList; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; -import de.charite.compbio.jannovar.reference.TranscriptModel; -import htsjdk.variant.variantcontext.VariantContext; -import htsjdk.variant.vcf.VCFFileReader; - -import java.nio.file.Path; -import java.util.Collections; -import java.util.List; - -/** - * @author Jules Jacobsen - */ -public class VariantFactoryStub extends VariantFactory { - - - public VariantFactoryStub() { - super(new JannovarData(HG19RefDictBuilder.build(), new ImmutableList.Builder().build())); - } - - @Override - public List createVariantContexts(Path vcfPath) { - return Collections.emptyList(); - } - - @Override - public List createVariantEvaluations(Path vcfPath) { - return Collections.emptyList(); - } -} - diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantFactoryTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantFactoryTest.java deleted file mode 100644 index b1bc71e6e..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/VariantFactoryTest.java +++ /dev/null @@ -1,159 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.factories; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.data.JannovarData; -import htsjdk.tribble.TribbleException; -import htsjdk.variant.variantcontext.Genotype; -import htsjdk.variant.variantcontext.GenotypeType; -import htsjdk.variant.variantcontext.GenotypesContext; -import htsjdk.variant.variantcontext.VariantContext; -import org.junit.Test; - -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.List; -import java.util.stream.Stream; - -import static java.util.stream.Collectors.toList; -import static org.hamcrest.CoreMatchers.*; -import static org.junit.Assert.assertThat; - -/** - * @author Jules Jacobsen - */ -public class VariantFactoryTest { - - private final VariantFactory instance; - - public VariantFactoryTest() { - JannovarData jannovarData = TestFactory.buildDefaultJannovarData(); - instance = new VariantFactory(jannovarData); - } - - private void printVariant(VariantEvaluation variant) { - GenotypesContext genotypes = variant.getVariantContext().getGenotypes(); - List genotypeTypes = genotypes.stream().map(Genotype::getType).collect(toList()); - System.out.printf("%s %s %s %s %s %s %s offExome=%s gene=%s %s%n", variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt(), variant.getGenotypeAsString(), genotypes, genotypeTypes, variant.isOffExome(), variant.getGeneSymbol(), variant.getVariantContext()); - } - - @Test - public void alternateConstructor() { - VariantFactory alternateFactory = new VariantFactory(TestFactory.buildDefaultJannovarData()); - assertThat(alternateFactory, notNullValue()); - } - - @Test(expected = TribbleException.class) - public void testCreateVariantContexts_NonExistentFile() { - Path vcfPath = Paths.get("src/test/resources/wibble.vcf"); - instance.createVariantContexts(vcfPath); - } - - @Test - public void testCreateVariantContexts_SingleAlleles() { - Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); - List variants = instance.createVariantContexts(vcfPath); - assertThat(variants.size(), equalTo(3)); - } - - @Test - public void testStreamVariantContexts_SingleAlleles() { - Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); - List variants = instance.streamVariantContexts(vcfPath) - .filter(variantContext -> (variantContext.getContig().equals("1"))) - .collect(toList()); - - assertThat(variants.size(), equalTo(3)); - } - - @Test - public void testStreamCreateVariants_SingleAlleles() { - Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); - List variants = instance.streamVariantEvaluations(vcfPath).collect(toList()); - variants.forEach(this::printVariant); - assertThat(variants.size(), equalTo(3)); - - } - - @Test - public void testCreateVariantContexts_MultipleAlleles() { - Path vcfPath = Paths.get("src/test/resources/altAllele.vcf"); - List variants = instance.createVariantContexts(vcfPath); - assertThat(variants.size(), equalTo(1)); - } - - @Test - public void testCreateVariantContexts_MultipleAlleles_DiferentSingleSampleGenotypes() { - Path vcfPath = Paths.get("src/test/resources/multiAlleleGenotypes.vcf"); - List variants = instance.createVariantContexts(vcfPath); - assertThat(variants.size(), equalTo(11)); - } - - @Test - public void testCreateVariants_SingleAlleles() { - Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); - List variants = instance.createVariantEvaluations(vcfPath); - variants.forEach(this::printVariant); - assertThat(variants.size(), equalTo(3)); - - } - - @Test - public void testCreateVariants_MultipleAllelesProduceOneVariantPerAllele() { - Path vcfPath = Paths.get("src/test/resources/altAllele.vcf"); - List variants = instance.createVariantEvaluations(vcfPath); - variants.forEach(this::printVariant); - assertThat(variants.size(), equalTo(2)); - } - - @Test - public void testCreateVariants_MultipleAlleles_SingleSampleGenotypesShouldOnlyReturnRepresentedVariationFromGenotype() { - Path vcfPath = Paths.get("src/test/resources/multiAlleleGenotypes.vcf"); - List variants = instance.createVariantEvaluations(vcfPath); - variants.forEach(this::printVariant); - assertThat(variants.size(), equalTo(11)); - } - - @Test - public void testCreateVariants_NoVariantAnnotationsProduceVariantEvaluationsWithNoAnnotations() { - Path vcfPath = Paths.get("src/test/resources/noAnnotations.vcf"); - List variants = instance.createVariantEvaluations(vcfPath); - assertThat(variants.size(), equalTo(2)); - - for (VariantEvaluation variant : variants) { - System.out.println(variant.getChromosomeName() + " " + variant); - assertThat(variant.hasAnnotations(), is(false)); - } - } - - @Test - public void testStreamVariantEvaluations_MultipleAlleles_DiferentSingleSampleGenotypes() { - Path vcfPath = Paths.get("src/test/resources/multiAlleleGenotypes.vcf"); - Stream variantStream = instance.streamVariantContexts(vcfPath); - List variants = instance.streamVariantEvaluations(variantStream).collect(toList()); - assertThat(variants.size(), equalTo(11)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/AbstractFilterResultTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/AbstractFilterResultTest.java deleted file mode 100644 index 82fbdac61..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/AbstractFilterResultTest.java +++ /dev/null @@ -1,86 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.not; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class AbstractFilterResultTest { - - @Test - public void testGetFilterType() { - FilterType expResult = FilterType.FREQUENCY_FILTER; - - FilterResult instance = new PassFilterResult(expResult); - - FilterType result = instance.getFilterType(); - assertEquals(expResult, result); - } - - @Test - public void testPassedFilterIsTrueWhenFilterResultStatusIsPass() { - FilterResult instance = new PassFilterResult(FilterType.FREQUENCY_FILTER); - assertThat(instance.passedFilter(), is(true)); - } - - @Test - public void testPassedFilterIsFalseWhenFilterResultStatusIsFail() { - FilterResult instance = new FailFilterResult(FilterType.FREQUENCY_FILTER); - assertThat(instance.passedFilter(), is(false)); - } - - @Test - public void testGetResultStatus() { - FilterResult instance = new PassFilterResult(FilterType.INTERVAL_FILTER); - assertThat(instance.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testHashCode() { - FilterResult instance = new FailFilterResult(FilterType.INTERVAL_FILTER); - FilterResult another = new FailFilterResult(FilterType.INTERVAL_FILTER); - int expResult = another.hashCode(); - int result = instance.hashCode(); - assertEquals(expResult, result); - } - - @Test - public void testNotEqualToNullObject() { - Object obj = null; - AbstractFilterResult instance = new FailFilterResult(FilterType.INTERVAL_FILTER); - assertThat(instance, not(equalTo(obj))); - } - - @Test - public void testNotEqualToDifferentFilterType() { - AbstractFilterResult other = new FailFilterResult(FilterType.BED_FILTER); - AbstractFilterResult instance = new FailFilterResult(FilterType.INTERVAL_FILTER); - assertThat(instance, not(equalTo(other))); - } - - @Test - public void testEqualToOtherFilterResult() { - AbstractFilterResult other = new FailFilterResult(FilterType.INTERVAL_FILTER); - AbstractFilterResult instance = new FailFilterResult(FilterType.INTERVAL_FILTER); - assertThat(instance, equalTo(other)); - } - - @Test - public void testToString() { - AbstractFilterResult instance = new PassFilterResult(FilterType.INTERVAL_FILTER); - String expResult = "Filter=Interval status=PASS"; - String result = instance.toString(); - assertEquals(expResult, result); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/BedFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/BedFilterTest.java deleted file mode 100644 index 4249953e8..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/BedFilterTest.java +++ /dev/null @@ -1,61 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import java.util.LinkedHashSet; -import java.util.Set; -import org.hamcrest.CoreMatchers; -import static org.hamcrest.CoreMatchers.equalTo; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author jj8 - */ -public class BedFilterTest { - - private BedFilter instance; - private Set targetGeneSymbols; - - - @Before - public void setUp() { - targetGeneSymbols = new LinkedHashSet<>(); - targetGeneSymbols.add("GENE1"); - - instance = new BedFilter(targetGeneSymbols); - } - - @Test - public void testGetFilterType() { - assertThat(instance.getFilterType(), equalTo(FilterType.BED_FILTER)); - } - - @Test - public void testCanGetGeneIds() { - assertThat(instance.getTargetGeneSymbols(), equalTo(targetGeneSymbols)); - } - - @Test - public void testRunFilter() { - } - - @Test - public void testHashCode() { - } - - @Test - public void testEquals() { - } - - @Test - public void testToString() { - assertThat(instance.toString(), equalTo("BedFilter{targetGeneSymbols=[GENE1]}")); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/EntrezGeneIdFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/EntrezGeneIdFilterTest.java deleted file mode 100644 index 2c499acb9..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/EntrezGeneIdFilterTest.java +++ /dev/null @@ -1,95 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; - -import java.util.HashSet; -import java.util.Set; - -import org.junit.Before; -import org.junit.Test; - -import static org.hamcrest.CoreMatchers.*; -import static org.hamcrest.MatcherAssert.assertThat; - - -/** - * - * @author Jules Jacobsen - */ -public class EntrezGeneIdFilterTest { - - private EntrezGeneIdFilter instance; - private Set genesToKeep; - - private static final int WANTED_GENE_ID = 1; - private static final int UNWANTED_GENE_ID = 0; - - private VariantEvaluation wantedPassesFilter; - private VariantEvaluation unwantedFailsFilter; - - @Before - public void setUp() { - initVariants(); - - genesToKeep = new HashSet<>(); - genesToKeep.add(WANTED_GENE_ID); - instance = new EntrezGeneIdFilter(genesToKeep); - } - - private void initVariants() { - wantedPassesFilter = new VariantEvaluation.VariantBuilder(1, 1, "A", "T").geneId(WANTED_GENE_ID).build(); - unwantedFailsFilter = new VariantEvaluation.VariantBuilder(1, 1, "A", "T").geneId(UNWANTED_GENE_ID).build(); - } - - @Test - public void testGetGeneIds() { - assertThat(instance.getGeneIds(), equalTo(genesToKeep)); - } - - @Test - public void testGetFilterType() { - assertThat(instance.getFilterType(), equalTo(FilterType.ENTREZ_GENE_ID_FILTER)); - } - - @Test - public void testRunFilterOnVariantWithWantedGeneIdPassesFilter() { - genesToKeep.add(wantedPassesFilter.getEntrezGeneId()); - - FilterResult filterResult = instance.runFilter(wantedPassesFilter); - - assertThat(filterResult.passedFilter(), is(true)); - assertThat(filterResult.getFilterType(), equalTo(FilterType.ENTREZ_GENE_ID_FILTER)); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testRunFilterOnVariantWithUnWantedGeneIdFailsFilter() { - - FilterResult filterResult = instance.runFilter(unwantedFailsFilter); - - assertThat(filterResult.passedFilter(), is(false)); - assertThat(filterResult.getFilterType(), equalTo(FilterType.ENTREZ_GENE_ID_FILTER)); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - } - - @Test - public void testHashCode() { - Filter otherFilter = new EntrezGeneIdFilter(genesToKeep); - assertThat(instance.hashCode(), equalTo(otherFilter.hashCode())); - } - - @Test - public void testEquals() { - } - - @Test - public void testToString() { - assertThat(instance.toString(), equalTo("EntrezGeneIdFilter{genesToKeep=[1]}")); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterReportFactoryTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterReportFactoryTest.java deleted file mode 100644 index 383018154..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterReportFactoryTest.java +++ /dev/null @@ -1,301 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.TestAnalysisBuilder; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.EnumSet; -import java.util.List; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.notNullValue; -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.Test; - -/** - * Tests for FilterReportFactory. - * - * @author Jules Jacobsen - */ -public class FilterReportFactoryTest { - - private FilterReportFactory instance; - - private List variantEvaluations; - private List genes; - private SampleData sampleData; - - private Analysis analysis; - - @Before - public void setUp() { - instance = new FilterReportFactory(); - - variantEvaluations = new ArrayList<>(); - genes = new ArrayList<>(); - sampleData = new SampleData(); - sampleData.setVariantEvaluations(variantEvaluations); - sampleData.setGenes(genes); - - analysis = new TestAnalysisBuilder().sampleData(sampleData).build(); - } - - private VariantEvaluation makeFailedVariant(FilterType filterType) { - VariantEvaluation failedFilterVariantEvaluation = new VariantEvaluation.VariantBuilder(6, 1000000, "C", "T").build(); - failedFilterVariantEvaluation.addFilterResult(new FailFilterResult(filterType)); - return failedFilterVariantEvaluation; - } - - private VariantEvaluation makePassedVariant(FilterType filterType) { - VariantEvaluation passedFilterVariantEvaluation = new VariantEvaluation.VariantBuilder(6, 1000000, "C", "T").build(); - passedFilterVariantEvaluation.addFilterResult(new PassFilterResult(filterType)); - return passedFilterVariantEvaluation; - } - - private Gene makeFailedGene(FilterType filterType) { - VariantEvaluation failedFilterVariantEvaluation = makeFailedVariant(filterType); - Gene failedFilterGene = new Gene("GENE1", 12345); - failedFilterGene.addVariant(failedFilterVariantEvaluation); - return failedFilterGene; - } - - private Gene makePassedGene(FilterType filterType) { - VariantEvaluation passedFilterVariantEvaluation = makePassedVariant(filterType); - Gene passedFilterGene = new Gene("GENE2", 67890); - passedFilterGene.addVariant(passedFilterVariantEvaluation); - return passedFilterGene; - } - - @Test - public void testMakeFilterReportsNoTypesSpecifiedReturnsEmptyList() { - List emptyFilterReportList = new ArrayList<>(); - - List reports = instance.makeFilterReports(analysis); - - assertThat(reports, equalTo(emptyFilterReportList)); - } - - @Test - public void testMakeFilterReportsFrequencyPathogenicityTypesSpecifiedReturnsListWithTwoReports() { - analysis.addStep(new FrequencyFilter(0.1f)); - analysis.addStep(new PathogenicityFilter(true)); - - List reports = instance.makeFilterReports(analysis); - - assertThat(reports.size(), equalTo(analysis.getAnalysisSteps().size())); - } - - @Test - public void testMakeFilterReportsDecoratedFrequencyPathogenicityTypesSpecifiedReturnsListWithTwoReports() { - analysis.addStep(new FrequencyDataProvider(null, Collections.emptySet(), new KnownVariantFilter())); - analysis.addStep(new FrequencyDataProvider(null, Collections.emptySet(), new FrequencyFilter(0.1f))); - analysis.addStep(new PathogenicityDataProvider(null, Collections.emptySet(), new PathogenicityFilter(true))); - - List reports = instance.makeFilterReports(analysis); - - assertThat(reports.size(), equalTo(analysis.getAnalysisSteps().size())); - assertThat(reports.get(0).getFilterType(), equalTo(FilterType.KNOWN_VARIANT_FILTER)); - assertThat(reports.get(1).getFilterType(), equalTo(FilterType.FREQUENCY_FILTER)); - assertThat(reports.get(2).getFilterType(), equalTo(FilterType.PATHOGENICITY_FILTER)); - } - - @Test - public void testMakeDefaultVariantFilterReportContainsCorrectNumberOfPassedAndFailedVariants() { - FilterType filterType = FilterType.BED_FILTER; - - variantEvaluations.add(makePassedVariant(filterType)); - variantEvaluations.add(makeFailedVariant(filterType)); - - FilterReport report = instance.makeFilterReport(new BedFilter(null), sampleData); - - assertThat(report.getPassed(), equalTo(1)); - assertThat(report.getFailed(), equalTo(1)); - } - - @Test - public void testMakeDefaultGeneFilterReportContainsCorrectNumberOfPassedAndFailedGenes() { - Filter filter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - FilterType filterType = filter.getFilterType(); - - genes.add(makePassedGene(filterType)); - genes.add(makeFailedGene(filterType)); - - FilterReport report = instance.makeFilterReport(filter, sampleData); - - assertThat(report.getPassed(), equalTo(1)); - assertThat(report.getFailed(), equalTo(1)); - } - - @Test - public void testMakeTargetFilterReport() { - VariantEffectFilter filter = new VariantEffectFilter(EnumSet.noneOf(VariantEffect.class)); - - FilterReport report = new FilterReport(filter.getFilterType(), 0, 0); - report.addMessage(String.format("Removed variants with effects of type: %s", filter.getOffTargetVariantTypes())); - - FilterReport result = instance.makeFilterReport(filter, sampleData); - - assertThat(result, equalTo(report)); - } - - @Test - public void testMakeFrequencyFilterReportCanCopeWithNullFrequencyData() { - Filter filter = new FrequencyFilter(0.1f); - FilterType filterType = filter.getFilterType(); - - VariantEvaluation variantEvalWithNullFrequencyData = makeFailedVariant(filterType); - variantEvalWithNullFrequencyData.setFrequencyData(null); - variantEvaluations.add(variantEvalWithNullFrequencyData); - - FilterReport result = instance.makeFilterReport(filter, sampleData); - - assertThat(result, notNullValue()); - } - - @Test - public void testMakeFrequencyFilterReport() { - Filter filter = new FrequencyFilter(0.0f); - FilterType filterType = filter.getFilterType(); - - VariantEvaluation completelyNovelVariantEval = makePassedVariant(filterType); - completelyNovelVariantEval.setFrequencyData(new FrequencyData()); - variantEvaluations.add(completelyNovelVariantEval); - - VariantEvaluation mostCommonVariantEvalInTheWorld = makeFailedVariant(filterType); - mostCommonVariantEvalInTheWorld.setFrequencyData(new FrequencyData(new RsId(123456), new Frequency[]{new Frequency(100f, FrequencySource.THOUSAND_GENOMES), new Frequency(100f, FrequencySource.ESP_ALL), new Frequency(100f, FrequencySource.EXAC_OTHER)})); - variantEvaluations.add(mostCommonVariantEvalInTheWorld); - - FilterReport report = new FilterReport(filterType, 1, 1); - - report.addMessage("Variants filtered for maximum allele frequency of 0.00%"); - FilterReport result = instance.makeFilterReport(filter, sampleData); - System.out.println(result); - assertThat(result, equalTo(report)); - } - - @Test - public void testMakeKnownVariantFilterReportProducesCorrectStatistics() { - Filter filter = new KnownVariantFilter(); - FilterType filterType = filter.getFilterType(); - - VariantEvaluation completelyNovelVariantEval = makePassedVariant(filterType); - completelyNovelVariantEval.setFrequencyData(new FrequencyData()); - variantEvaluations.add(completelyNovelVariantEval); - - VariantEvaluation mostCommonVariantEvalInTheWorld = makeFailedVariant(filterType); - mostCommonVariantEvalInTheWorld.setFrequencyData(new FrequencyData(new RsId(123456), new Frequency[]{new Frequency(100f, FrequencySource.THOUSAND_GENOMES), new Frequency(100f, FrequencySource.ESP_ALL), new Frequency(100f, FrequencySource.EXAC_OTHER)})); - variantEvaluations.add(mostCommonVariantEvalInTheWorld); - - FilterReport report = new FilterReport(filterType, 1, 1); - - report.addMessage("Removed 1 variants with no RSID or frequency data (50.0%)"); - report.addMessage("dbSNP \"rs\" id available for 1 variants (50.0%)"); - report.addMessage("Data available in dbSNP (for 1000 Genomes Phase I) for 1 variants (50.0%)"); - report.addMessage("Data available in Exome Server Project for 1 variants (50.0%)"); - report.addMessage("Data available from ExAC Project for 1 variants (50.0%)"); - FilterReport result = instance.makeFilterReport(filter, sampleData); - System.out.println(result); - - assertThat(result, equalTo(report)); - } - - @Test - public void testMakeQualityFilterReport() { - Filter filter = new QualityFilter(100.0f); - FilterType filterType = filter.getFilterType(); - - FilterReport report = new FilterReport(filterType, 0, 0); - report.addMessage("Variants filtered for mimimum PHRED quality of 100.0"); - - FilterReport result = instance.makeFilterReport(filter, sampleData); - - assertThat(result, equalTo(report)); - } - - @Test - public void testMakePathogenicityFilterReportWhenRemovePathFilterCutOffIsTrue() { - Filter filter = new PathogenicityFilter(true); - FilterType filterType = FilterType.PATHOGENICITY_FILTER; - - FilterReport report = new FilterReport(filterType, 0, 0); - report.addMessage("Retained all non-pathogenic variants of all types. Scoring was applied, but the filter passed all variants."); - - FilterReport result = instance.makeFilterReport(filter, sampleData); - - assertThat(result, equalTo(report)); - } - - @Test - public void testMakePathogenicityFilterReportWhenRemovePathFilterCutOffIsNotSpecified() { - Filter filter = new PathogenicityFilter(false); - FilterType filterType = FilterType.PATHOGENICITY_FILTER; - - FilterReport report = new FilterReport(filterType, 0, 0); - report.addMessage("Retained all non-pathogenic missense variants"); - - FilterReport result = instance.makeFilterReport(filter, sampleData); - - assertThat(result, equalTo(report)); - } - - @Test - public void testMakeIntervalFilterReport() { - GeneticInterval interval = new GeneticInterval(1, 2, 3); - Filter filter = new IntervalFilter(interval); - FilterType filterType = FilterType.INTERVAL_FILTER; - - FilterReport report = new FilterReport(filterType, 0, 0); - report.addMessage(String.format("Restricted variants to interval: %s", interval)); - - FilterReport result = instance.makeFilterReport(filter, sampleData); - - assertThat(result, equalTo(report)); - } - - @Test - public void testMakeInheritanceFilterReport() { - ModeOfInheritance expectedInheritanceMode = ModeOfInheritance.AUTOSOMAL_DOMINANT; - Filter filter = new InheritanceFilter(expectedInheritanceMode); - FilterType filterType = FilterType.INHERITANCE_FILTER; - - FilterReport report = new FilterReport(filterType, 0, 0); - report.addMessage("Genes filtered for compatibility with AUTOSOMAL_DOMINANT inheritance."); - - FilterReport result = instance.makeFilterReport(filter, sampleData); - - assertThat(result, equalTo(report)); - } - - @Test - public void testMakePriorityScoreFilterReport() { - float minimumPriorityScore = 0.5f; - Filter filter = new PriorityScoreFilter(PriorityType.PHIVE_PRIORITY, minimumPriorityScore); - FilterType filterType = FilterType.PRIORITY_SCORE_FILTER; - - FilterReport report = new FilterReport(filterType, 0, 0); - report.addMessage("Genes filtered for minimum PHIVE_PRIORITY score of 0.5"); - - FilterReport result = instance.makeFilterReport(filter, sampleData); - - assertThat(result, equalTo(report)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterSettingsImplTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterSettingsImplTest.java deleted file mode 100644 index 23ebb3de5..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterSettingsImplTest.java +++ /dev/null @@ -1,141 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.filters.FilterSettingsImpl.FilterSettingsBuilder; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.LinkedHashSet; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; -import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class FilterSettingsImplTest { - - private FilterSettings instance; - private FilterSettingsBuilder builder; - - private static final float MAX_FREQ_DEFAULT = 100.00f; - private static final float MIN_QUAL_DEFAULT = 0; - private static final GeneticInterval GENETIC_INTERVAL_DEFAULT = null; - private static final boolean KEEP_NON_PATHOGENIC_VARIANTS_DEFAULT = false; - private static final boolean REMOVE_KNOWN_VARIANTS_DEFAULT = false; - private static final boolean KEEP_OFF_TARGET_VARIANTS_DEFAULT = false; - private static final Set GENE_IDS_TO_KEEP_DEFAULT = new LinkedHashSet(); - private static final ModeOfInheritance MODE_OF_INHERITANCE_DEFAULT = ModeOfInheritance.UNINITIALIZED; - - @Before - public void setUp() { - builder = new FilterSettingsBuilder(); - } - - @Test - public void testDefaultValues() { - instance = builder.build(); - assertThat(instance.getMaximumFrequency(), equalTo(MAX_FREQ_DEFAULT)); - assertThat(instance.getMinimumQuality(), equalTo(MIN_QUAL_DEFAULT)); - assertThat(instance.getGeneticInterval(), equalTo(GENETIC_INTERVAL_DEFAULT)); - assertThat(instance.removePathFilterCutOff(), equalTo(KEEP_NON_PATHOGENIC_VARIANTS_DEFAULT)); - assertThat(instance.removeKnownVariants(), equalTo(REMOVE_KNOWN_VARIANTS_DEFAULT)); - assertThat(instance.keepOffTargetVariants(), equalTo(KEEP_OFF_TARGET_VARIANTS_DEFAULT)); - assertThat(instance.getGenesToKeep(), equalTo(GENE_IDS_TO_KEEP_DEFAULT)); - assertThat(instance.getModeOfInheritance(), equalTo(MODE_OF_INHERITANCE_DEFAULT)); - } - - @Test - public void testMaximumFrequency() { - float maxFreq = 0.5f; - instance = builder.maximumFrequency(maxFreq).build(); - assertThat(instance.getMaximumFrequency(), equalTo(maxFreq)); - } - - @Test - public void testMinimumQuality() { - float minQual = 10f; - instance = builder.minimumQuality(minQual).build(); - assertThat(instance.getMinimumQuality(), equalTo(minQual)); - } - - @Test - public void testGeneticInterval() { - GeneticInterval interval = null; - instance = builder.geneticInterval(interval).build(); - assertThat(instance.getGeneticInterval(), nullValue()); - } - - @Test - public void testKeepNonPathogenic() { - boolean keepNonPathogenic = false; - instance = builder.keepNonPathogenic(keepNonPathogenic).build(); - assertThat(instance.removePathFilterCutOff(), equalTo(keepNonPathogenic)); - } - - @Test - public void testRemoveKnownVariants() { - boolean removeKnownVariants = true; - instance = builder.removeKnownVariants(removeKnownVariants).build(); - assertThat(instance.removeKnownVariants(), equalTo(removeKnownVariants)); - } - - @Test - public void testKeepOffTargetVariants() { - boolean keepOffTargetVariants = true; - instance = builder.keepOffTargetVariants(keepOffTargetVariants).build(); - assertThat(instance.keepOffTargetVariants(), equalTo(keepOffTargetVariants)); - } - - @Test - public void testGenesToKeep() { - Set genesToKeep = new LinkedHashSet<>(); - genesToKeep.add(1); - genesToKeep.add(2); - genesToKeep.add(3); - instance = builder.genesToKeep(genesToKeep).build(); - assertThat(instance.getGenesToKeep(), equalTo(genesToKeep)); - } - - @Test - public void testModeOfInheritance() { - ModeOfInheritance modeOfInheritance = ModeOfInheritance.AUTOSOMAL_DOMINANT; - instance = builder.modeOfInheritance(modeOfInheritance).build(); - assertThat(instance.getModeOfInheritance(), equalTo(modeOfInheritance)); - } - - @Test - public void testHashCode() { - FilterSettings other = new FilterSettingsBuilder().build(); - instance = builder.build(); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - - @Test - public void testEquals() { - FilterSettings other = new FilterSettingsBuilder().build(); - instance = builder.build(); - assertThat(instance, equalTo(other)); - } - - @Test - public void testNotEquals() { - FilterSettings other = new FilterSettingsBuilder().minimumQuality(Float.MAX_VALUE).build(); - instance = builder.build(); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testToString() { - instance = builder.build(); - System.out.println(instance); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterTypeTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterTypeTest.java deleted file mode 100644 index 43fe53fac..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterTypeTest.java +++ /dev/null @@ -1,40 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.filters; - -import static org.hamcrest.CoreMatchers.equalTo; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class FilterTypeTest { - - public FilterTypeTest() { - } - - /** - * Test of valueOf method, of class FilterType. - */ - @Test - public void testValueOf() { - String name = "FREQUENCY_FILTER"; - FilterType expResult = FilterType.FREQUENCY_FILTER; - FilterType result = FilterType.valueOf(name); - assertEquals(expResult, result); - } - - @Test - public void testGenePriorityScoreFilter() { - FilterType filterType = FilterType.PRIORITY_SCORE_FILTER; - String name = "PRIORITY_SCORE_FILTER"; - assertThat(FilterType.valueOf(name), equalTo(filterType)); - assertThat(filterType.toString(), equalTo("Gene priority score")); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FrequencyDataProviderTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FrequencyDataProviderTest.java deleted file mode 100644 index 515c6dcad..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FrequencyDataProviderTest.java +++ /dev/null @@ -1,127 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.factories.VariantDataServiceMock; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import static de.charite.compbio.exomiser.core.model.frequency.FrequencySource.*; -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import org.junit.Before; -import org.junit.Test; - -import java.util.*; - -import static org.hamcrest.MatcherAssert.assertThat; -import static org.hamcrest.core.Is.is; -import static org.hamcrest.core.IsEqual.equalTo; - -/** - * @author Jules Jacobsen - */ -public class FrequencyDataProviderTest { - - private static final Set EMPTY_SET = Collections.emptySet(); - - private FrequencyDataProvider instance; - private VariantDataServiceMock variantDataService; - - private VariantEvaluation variant; - private final FrequencyData defaultFrequencyData = new FrequencyData(null, new HashSet<>()); - - @Before - public void setUp() { - variantDataService = new VariantDataServiceMock(); - variant = new VariantEvaluation.VariantBuilder(1, 1, "A", "T").frequencyData(defaultFrequencyData).build(); - } - - @Test - public void testReturnsFilterTypeOfDecoratedFilter_FrequencyFilter() { - final VariantFilter decoratedFilter = new FrequencyFilter(100f); - - instance = new FrequencyDataProvider(variantDataService, EMPTY_SET, decoratedFilter); - - assertThat(instance.getFilterType(), equalTo(decoratedFilter.getFilterType())); - assertThat(instance.isVariantFilter(), is(true)); - } - - @Test - public void testReturnsFilterTypeOfDecoratedFilter_KnownVariantFilter() { - final KnownVariantFilter decoratedFilter = new KnownVariantFilter(); - - instance = new FrequencyDataProvider(variantDataService, EMPTY_SET, decoratedFilter); - - assertThat(instance.getFilterType(), equalTo(decoratedFilter.getFilterType())); - assertThat(instance.isVariantFilter(), is(true)); - } - - @Test - public void testProvidesFrequencyDataForVariantWhenRun() { - FrequencyData expectedData = new FrequencyData(new RsId(123456), new Frequency(1.0f, ESP_ALL)); - variantDataService.put(variant, expectedData); - - instance = new FrequencyDataProvider(variantDataService, EnumSet.allOf(FrequencySource.class), new KnownVariantFilter()); - assertThat(variant.getFrequencyData(), equalTo(defaultFrequencyData)); - - instance.runFilter(variant); - assertThat(variant.getFrequencyData(), equalTo(expectedData)); - } - - @Test - public void testFilterResultIsThatOfDecoratedFilter() { - final KnownVariantFilter decoratedFilter = new KnownVariantFilter(); - - instance = new FrequencyDataProvider(variantDataService, EMPTY_SET, decoratedFilter); - - FilterResult filterResult = instance.runFilter(variant); - assertThat(filterResult.passedFilter(), is(true)); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - assertThat(filterResult.getFilterType(), equalTo(decoratedFilter.getFilterType())); - } - - @Test - public void testFrequencyDataOnlyContainsSpecifiedSources_NoDataInDatabase() { - final KnownVariantFilter decoratedFilter = new KnownVariantFilter(); - - instance = new FrequencyDataProvider(variantDataService, EnumSet.of(ESP_ALL), decoratedFilter); - instance.runFilter(variant); - - assertThat(variant.getFrequencyData(), equalTo(new FrequencyData(null, new HashSet<>()))); - } - - @Test - public void testFrequencyDataOnlyContainsSpecifiedSources_OneSourceSpecifiedAllDataSourcesInDatabase() { - - Frequency espAll = new Frequency(0.01f, ESP_ALL); - FrequencyData variantFrequencyData = new FrequencyData(new RsId(123456), espAll, new Frequency(0.234f, EXAC_AFRICAN_INC_AFRICAN_AMERICAN), new Frequency(0.02f, EXAC_FINNISH)); - - variantDataService.put(variant, variantFrequencyData); - - instance = new FrequencyDataProvider(variantDataService, EnumSet.of(espAll.getSource()), new KnownVariantFilter()); - instance.runFilter(variant); - - assertThat(variant.getFrequencyData(), equalTo(new FrequencyData(new RsId(123456), espAll))); - } - - @Test - public void testFrequencyDataOnlyContainsSpecifiedSources_TwoSourcesSpecifiedAllDataSourcesInDatabase() { - - Frequency espAll = new Frequency(0.01f, ESP_ALL); - Frequency exacAfr = new Frequency(0.234f, EXAC_AFRICAN_INC_AFRICAN_AMERICAN); - FrequencyData variantFrequencyData = new FrequencyData(new RsId(123456), espAll, exacAfr, new Frequency(0.02f, EXAC_FINNISH)); - - variantDataService.put(variant, variantFrequencyData); - - instance = new FrequencyDataProvider(variantDataService, EnumSet.of(espAll.getSource(), exacAfr.getSource()), new KnownVariantFilter()); - instance.runFilter(variant); - - assertThat(variant.getFrequencyData(), equalTo(new FrequencyData(new RsId(123456), espAll, exacAfr))); - } - - @Test - public void testGetDecoratedFilter() { - VariantFilter decoratedFilter = new KnownVariantFilter(); - instance = new FrequencyDataProvider(variantDataService, EnumSet.noneOf(FrequencySource.class), decoratedFilter); - assertThat(instance.getDecoratedFilter(), equalTo(decoratedFilter)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FrequencyFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FrequencyFilterTest.java deleted file mode 100644 index c480878c5..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FrequencyFilterTest.java +++ /dev/null @@ -1,169 +0,0 @@ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import static org.hamcrest.CoreMatchers.*; -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.Test; - -public class FrequencyFilterTest { - - private FrequencyFilter instance; - - private VariantEvaluation passesEspAllFrequency; - private VariantEvaluation passesEspAAFrequency; - private VariantEvaluation passesEspEAFrequency; - private VariantEvaluation passesDbsnpFrequency; - - private VariantEvaluation failsFrequency; - private VariantEvaluation passesNoFrequencyData; - - private static final float FREQ_THRESHOLD = 0.1f; - private static final float PASS_FREQ = FREQ_THRESHOLD - 0.02f; - private static final float FAIL_FREQ = FREQ_THRESHOLD + 1.0f; - - private static final Frequency ESP_ALL_PASS = new Frequency(PASS_FREQ, FrequencySource.ESP_ALL); - private static final Frequency ESP_ALL_FAIL = new Frequency(FAIL_FREQ); - - private static final Frequency ESP_AA_PASS = new Frequency(PASS_FREQ, FrequencySource.ESP_AFRICAN_AMERICAN); - - private static final Frequency ESP_EA_PASS = new Frequency(PASS_FREQ, FrequencySource.ESP_EUROPEAN_AMERICAN); - - private static final Frequency DBSNP_PASS = new Frequency(PASS_FREQ, FrequencySource.THOUSAND_GENOMES); - - private static final FrequencyData espAllPassData = new FrequencyData(null, ESP_ALL_PASS); - private static final FrequencyData espAllFailData = new FrequencyData(null, ESP_ALL_FAIL); - private static final FrequencyData espAaPassData = new FrequencyData(null, ESP_AA_PASS); - private static final FrequencyData espEaPassData = new FrequencyData(null, ESP_EA_PASS); - private static final FrequencyData dbSnpPassData = new FrequencyData(null, DBSNP_PASS); - private static final FrequencyData noFreqData = new FrequencyData(); - - @Before - public void setUp() throws Exception { - - instance = new FrequencyFilter(FREQ_THRESHOLD); - - passesEspAllFrequency = makeTestVariantEvaluation(); - passesEspAllFrequency.setFrequencyData(espAllPassData); - - passesEspAAFrequency = makeTestVariantEvaluation(); - passesEspAAFrequency.setFrequencyData(espAaPassData); - - passesEspEAFrequency = makeTestVariantEvaluation(); - passesEspEAFrequency.setFrequencyData(espEaPassData); - - passesDbsnpFrequency = makeTestVariantEvaluation(); - passesDbsnpFrequency.setFrequencyData(dbSnpPassData); - - failsFrequency = makeTestVariantEvaluation(); - failsFrequency.setFrequencyData(espAllFailData); - - passesNoFrequencyData = makeTestVariantEvaluation(); - passesNoFrequencyData.setFrequencyData(noFreqData); - - } - - private VariantEvaluation makeTestVariantEvaluation() { - return new VariantEvaluation.VariantBuilder(1, 1, "A", "T").build(); - } - - @Test - public void getMaxFrequencyCutoff() { - assertThat(instance.getMaxFreq(), equalTo(FREQ_THRESHOLD)); - } - - @Test - public void testGetFilterType() { - assertThat(instance.getFilterType(), equalTo(FilterType.FREQUENCY_FILTER)); - } - - @Test(expected = IllegalArgumentException.class) - public void throwsIllegalArgumentExceptionWhenInstanciatedWithNegativeFrequency() { - instance = new FrequencyFilter(-1f); - } - - @Test(expected = IllegalArgumentException.class) - public void throwsIllegalArgumentExceptionWhenInstanciatedWithFrequencyGreaterThanOneHundredPercent() { - instance = new FrequencyFilter(101f); - } - - @Test - public void testFilterPassesVariantEvaluationWithFrequencyUnderThreshold() { - instance = new FrequencyFilter(FREQ_THRESHOLD); - System.out.println(passesEspAllFrequency + " " + passesEspAllFrequency.getFrequencyData()); - FilterResult filterResult = instance.runFilter(passesEspAllFrequency); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testFilterPassesVariantEvaluationWithNoFrequencyData() { - - FilterResult filterResult = instance.runFilter(passesNoFrequencyData); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testFilterFailsVariantEvaluationWithFrequencyDataAboveThreshold() { - - FilterResult filterResult = instance.runFilter(failsFrequency); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - } - - @Test - public void testPassesFilterFails() { - assertThat(instance.passesFilter(espAllFailData), is(false)); - } - - @Test - public void testEaspAllPassesFilter() { - assertThat(instance.passesFilter(espAllPassData), is(true)); - } - - @Test - public void testNoFrequencyDataPassesFilter() { - assertThat(instance.passesFilter(noFreqData), is(true)); - } - - @Test - public void testHashCode() { - FrequencyFilter otherFilter = new FrequencyFilter(FREQ_THRESHOLD); - assertThat(instance.hashCode(), equalTo(otherFilter.hashCode())); - } - - @Test - public void testNotEqualNull() { - Object obj = null; - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testNotEqualOtherObject() { - Object obj = "Not equal to this"; - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testNotEqualOtherFrequencyFilterWithDifferentThreshold() { - FrequencyFilter otherFilter = new FrequencyFilter(FAIL_FREQ); - assertThat(instance.equals(otherFilter), is(false)); - } - - @Test - public void testEqualsSelf() { - assertThat(instance.equals(instance), is(true)); - } - - @Test - public void testToString() { - System.out.println(instance); - assertThat(instance.toString().isEmpty(), is(false)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/IntervalFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/IntervalFilterTest.java deleted file mode 100644 index ca8fc0b24..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/IntervalFilterTest.java +++ /dev/null @@ -1,128 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class IntervalFilterTest { - - IntervalFilter instance; - - private static final byte RIGHT_CHR = 7; - private static final byte WRONG_CHR = 3; - private static final int START_REGION = 155595590; - private static final int END_REGION = 155604810; - - private static final int INSIDE_REGION = START_REGION + 20; - private static final int BEFORE_REGION = START_REGION - 20; - private static final int AFTER_REGION = END_REGION + 20; - - - private static final GeneticInterval SEARCH_INTERVAL = new GeneticInterval(RIGHT_CHR, START_REGION, END_REGION); - - - private VariantEvaluation rightChromosomeRightPosition; - private VariantEvaluation rightChromosomeWrongPosition; - private VariantEvaluation wrongChromosomeRightPosition; - private VariantEvaluation wrongChromosomeWrongPosition; - - public IntervalFilterTest() { - setUpVariants(); - } - - private void setUpVariants() { - rightChromosomeRightPosition = new VariantEvaluation.VariantBuilder(RIGHT_CHR, INSIDE_REGION, "A", "T").build(); - rightChromosomeWrongPosition = new VariantEvaluation.VariantBuilder(RIGHT_CHR, BEFORE_REGION, "A", "T").build(); - wrongChromosomeRightPosition = new VariantEvaluation.VariantBuilder(WRONG_CHR, INSIDE_REGION, "A", "T").build(); - wrongChromosomeWrongPosition = new VariantEvaluation.VariantBuilder(RIGHT_CHR, AFTER_REGION, "A", "T").build(); - } - - @Before - public void setUp() { - instance = new IntervalFilter(SEARCH_INTERVAL); - } - - @Test - public void testGetInterval() { - assertThat(instance.getGeneticInterval(), equalTo(SEARCH_INTERVAL)); - } - - @Test - public void testThatRightChromosomeRightPositionPassesFilter() { - FilterResult filterResult = instance.runFilter(rightChromosomeRightPosition); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testThatRightChromosomeWrongPositionFailsFilter() { - FilterResult filterResult = instance.runFilter(rightChromosomeWrongPosition); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - } - - @Test - public void testThatWrongChromosomeRightPositionFailsFilter() { - FilterResult filterResult = instance.runFilter(wrongChromosomeRightPosition); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - } - - @Test - public void testThatWrongChromosomeWrongPositionFailsFilter() { - FilterResult filterResult = instance.runFilter(wrongChromosomeWrongPosition); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - } - - @Test - public void testGetFilterType() { - assertThat(instance.getFilterType(), equalTo(FilterType.INTERVAL_FILTER)); - } - - @Test - public void testHashCode() { - IntervalFilter otherFilter = new IntervalFilter(SEARCH_INTERVAL); - assertThat(instance.hashCode(), equalTo(otherFilter.hashCode())); - } - - @Test - public void testNotEquals() { - Object obj = null; - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testNotEqualsIntervalDifferent() { - IntervalFilter otherFilter = new IntervalFilter(GeneticInterval.parseString(HG19RefDictBuilder.build(), - "chr3:12334-67850")); - assertThat(instance.equals(otherFilter), is(false)); - } - - @Test - public void testIsEquals() { - IntervalFilter otherFilter = new IntervalFilter(SEARCH_INTERVAL); - assertThat(instance.equals(otherFilter), is(true)); - } - - @Test - public void testToString() { - String expected = String.format("%s filter chromosome=%d, from=%d, to=%d, interval=%s", - instance.getFilterType(), RIGHT_CHR, START_REGION, END_REGION, SEARCH_INTERVAL); - assertThat(instance.toString(), equalTo(expected)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/KnownVariantFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/KnownVariantFilterTest.java deleted file mode 100644 index fe2ccb6aa..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/KnownVariantFilterTest.java +++ /dev/null @@ -1,61 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.VariantEvaluation.VariantBuilder; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class KnownVariantFilterTest { - - private final VariantFilter instance = new KnownVariantFilter(); - - private final FilterResult PASS_RESULT = new PassFilterResult(FilterType.KNOWN_VARIANT_FILTER); - private final FilterResult FAIL_RESULT = new FailFilterResult(FilterType.KNOWN_VARIANT_FILTER); - - private VariantEvaluation buildVariantWithFrequencyData(FrequencyData frequencyData) { - return new VariantBuilder(1, 1, "A", "T").frequencyData(frequencyData).build(); - } - - @Test - public void testVariantType() { - assertThat(instance.getFilterType(), equalTo(FilterType.KNOWN_VARIANT_FILTER)); - } - - @Test - public void testRunFilter_ReturnsFailResultWhenFilteringVariantWithRsId() { - FrequencyData frequencyData = new FrequencyData(new RsId(12345)); - VariantEvaluation variantEvaluation = buildVariantWithFrequencyData(frequencyData); - FilterResult filterResult = instance.runFilter(variantEvaluation); - assertThat(filterResult, equalTo(FAIL_RESULT)); - } - - @Test - public void testRunFilter_ReturnsFailResultWhenFilteringVariantWithKnownFrequency() { - FrequencyData frequencyData = new FrequencyData(null, new Frequency(1f)); - VariantEvaluation variantEvaluation = buildVariantWithFrequencyData(frequencyData); - FilterResult filterResult = instance.runFilter(variantEvaluation); - assertThat(filterResult, equalTo(FAIL_RESULT)); - } - - @Test - public void testRunFilter_ReturnsPassResultWhenFilteringVariantWithNoRepresentationInDatabase() { - FrequencyData frequencyData = new FrequencyData(); - VariantEvaluation variantEvaluation = buildVariantWithFrequencyData(frequencyData); - FilterResult filterResult = instance.runFilter(variantEvaluation); - assertThat(filterResult, equalTo(PASS_RESULT)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PassAllVariantEffectsFilter.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PassAllVariantEffectsFilter.java deleted file mode 100644 index 06d039851..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PassAllVariantEffectsFilter.java +++ /dev/null @@ -1,33 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import java.util.EnumSet; - -/** - * Mock variant effect filter which will always return a PASS FilterResult with a score of 1.0. - * - * @author Jules Jacobsen - */ -public class PassAllVariantEffectsFilter extends VariantEffectFilter { - - public PassAllVariantEffectsFilter() { - super(EnumSet.noneOf(VariantEffect.class)); - } - - @Override - public FilterType getFilterType() { - return FilterType.VARIANT_EFFECT_FILTER; - } - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - return new PassFilterResult(FilterType.VARIANT_EFFECT_FILTER); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PathogenicityDataProviderTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PathogenicityDataProviderTest.java deleted file mode 100644 index c6c0f3751..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PathogenicityDataProviderTest.java +++ /dev/null @@ -1,85 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.factories.VariantDataServiceMock; -import de.charite.compbio.exomiser.core.model.FilterStatus; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.pathogenicity.MutationTasterScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import static de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource.*; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.SiftScore; - -import java.util.Collections; -import java.util.EnumSet; -import java.util.HashSet; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class PathogenicityDataProviderTest { - - private static final Set EMPTY_SET = Collections.emptySet(); - - private PathogenicityDataProvider instance; - private VariantDataServiceMock variantDataService; - - private VariantEvaluation variant; - private static final PathogenicityData EXPECTED_PATH_DATA = new PathogenicityData(new PolyPhenScore(1f), new SiftScore(0f), new MutationTasterScore(1f)); - private static final PathogenicityData EMPTY_PATH_DATA = new PathogenicityData(new HashSet<>()); - - @Before - public void setUp() { - variantDataService = new VariantDataServiceMock(); - variant = new VariantEvaluation.VariantBuilder(1, 1, "A", "T").pathogenicityData(EMPTY_PATH_DATA).build(); - variantDataService.put(variant, EXPECTED_PATH_DATA); - } - - @Test - public void testProvideVariantData() { - instance = new PathogenicityDataProvider(variantDataService, EnumSet.of(POLYPHEN, SIFT, MUTATION_TASTER), new StubPassAllVariantFilter(FilterType.PATHOGENICITY_FILTER)); - - assertThat(variant.getPathogenicityData(), equalTo(EMPTY_PATH_DATA)); - instance.provideVariantData(variant); - assertThat(variant.getPathogenicityData(), equalTo(EXPECTED_PATH_DATA)); - } - - @Test - public void testRunFilter() { - FilterType variantFilterType = FilterType.PATHOGENICITY_FILTER; - instance = new PathogenicityDataProvider(variantDataService, EnumSet.of(POLYPHEN, SIFT, MUTATION_TASTER), new StubPassAllVariantFilter(variantFilterType)); - - assertThat(variant.getPathogenicityData(), equalTo(EMPTY_PATH_DATA)); - assertThat(variant.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); - - FilterResult filterResult = instance.runFilter(variant); - - assertThat(variant.getPathogenicityData(), equalTo(EXPECTED_PATH_DATA)); - assertThat(filterResult.getFilterType(), equalTo(variantFilterType)); - } - - @Test - public void testGetFilterType() { - VariantFilter decoratedFilter = new PathogenicityFilter(true); - instance = new PathogenicityDataProvider(variantDataService, EMPTY_SET, decoratedFilter); - assertThat(instance.getFilterType(), equalTo(decoratedFilter.getFilterType())); - } - - @Test - public void testGetDecoratedFilter() { - VariantFilter decoratedFilter = new PathogenicityFilter(true); - instance = new PathogenicityDataProvider(variantDataService, EMPTY_SET, decoratedFilter); - assertThat(instance.getDecoratedFilter(), equalTo(decoratedFilter)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PathogenicityFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PathogenicityFilterTest.java deleted file mode 100644 index dd707fb2f..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PathogenicityFilterTest.java +++ /dev/null @@ -1,182 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.pathogenicity.MutationTasterScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.SiftScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.VariantTypePathogenicityScores; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.MatcherAssert.assertThat; - -import org.junit.Before; -import org.junit.Test; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation.VariantBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class PathogenicityFilterTest { - - private PathogenicityFilter instance; - - private static final boolean PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS = false; - private static final boolean PASS_ALL_VARIANTS = true; - - VariantEvaluation missensePassesFilter; - VariantEvaluation downstreamFailsFilter; - VariantEvaluation stopGainPassesFilter; - VariantEvaluation predictedNonPathogenicMissense; - - private static final float SIFT_PASS_SCORE = SiftScore.SIFT_THRESHOLD - 0.01f; - private static final float SIFT_FAIL_SCORE = SiftScore.SIFT_THRESHOLD + 0.01f; - - private static final SiftScore SIFT_PASS = new SiftScore(SIFT_PASS_SCORE); - private static final SiftScore SIFT_FAIL = new SiftScore(SIFT_FAIL_SCORE); - - private static final float POLYPHEN_PASS_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f; - private static final float POLYPHEN_FAIL_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD - 0.1f; - - private static final PolyPhenScore POLYPHEN_PASS = new PolyPhenScore(POLYPHEN_PASS_SCORE); - private static final PolyPhenScore POLYPHEN_FAIL = new PolyPhenScore(POLYPHEN_FAIL_SCORE); - - private static final float MTASTER_PASS_SCORE = MutationTasterScore.MTASTER_THRESHOLD + 0.01f; - private static final float MTASTER_FAIL_SCORE = MutationTasterScore.MTASTER_THRESHOLD - 0.01f; - - private static final MutationTasterScore MTASTER_PASS = new MutationTasterScore(MTASTER_PASS_SCORE); - private static final MutationTasterScore MTASTER_FAIL = new MutationTasterScore(MTASTER_FAIL_SCORE); - - @Before - public void setUp() { - - instance = new PathogenicityFilter(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS); - - // make the variant evaluations - missensePassesFilter = testVariantBuilder() - .variantEffect(VariantEffect.MISSENSE_VARIANT) - .pathogenicityData(new PathogenicityData(SIFT_PASS)) - .build(); - - predictedNonPathogenicMissense = testVariantBuilder() - .variantEffect(VariantEffect.MISSENSE_VARIANT) - .pathogenicityData(new PathogenicityData(POLYPHEN_FAIL)) - .build(); - - downstreamFailsFilter = testVariantBuilder() - .variantEffect(VariantEffect.DOWNSTREAM_GENE_VARIANT) - .pathogenicityData(new PathogenicityData()) - .build(); - - stopGainPassesFilter = testVariantBuilder() - .variantEffect(VariantEffect.STOP_GAINED) - .pathogenicityData(new PathogenicityData()) - .build(); - } - - private VariantBuilder testVariantBuilder() { - return new VariantBuilder(1, 1, "A", "T"); - } - - @Test - public void test() { - assertThat(instance.keepNonPathogenic(), equalTo(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS)); - } - - @Test - public void testThatOffTargetNonPathogenicVariantsAreStillScoredAndFailFilterWhenPassAllVariantsSetFalse() { - instance = new PathogenicityFilter(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS); - - FilterResult filterResult = instance.runFilter(downstreamFailsFilter); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - } - - @Test - public void testThatOffTargetNonPathogenicVariantsAreStillScoredAndPassFilterWhenPassAllVariantsSetTrue() { - instance = new PathogenicityFilter(PASS_ALL_VARIANTS); - - FilterResult filterResult = instance.runFilter(downstreamFailsFilter); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testThatMissenseNonPathogenicVariantsAreStillScoredAndPassFilterWhenPassAllVariantsSetTrue() { - instance = new PathogenicityFilter(PASS_ALL_VARIANTS); - - FilterResult filterResult = instance.runFilter(predictedNonPathogenicMissense); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testThatMissenseNonPathogenicVariantsAreStillScoredAndPassFilterWhenPassAllVariantsSetFalse() { - instance = new PathogenicityFilter(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS); - - FilterResult filterResult = instance.runFilter(predictedNonPathogenicMissense); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testGetFilterType() { - assertThat(instance.getFilterType(), equalTo(FilterType.PATHOGENICITY_FILTER)); - } - - @Test - public void testToString() { - String expResult = "PathogenicityFilter{keepNonPathogenic=false}"; - String result = instance.toString(); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testEqualToOtherPathogenicityFilter() { - instance = new PathogenicityFilter(false); - PathogenicityFilter other = new PathogenicityFilter(false); - assertThat(instance.equals(other), is(true)); - } - - @Test - public void testNotEqualToOtherPathogenicityFilter() { - instance = new PathogenicityFilter(false); - PathogenicityFilter other = new PathogenicityFilter(true); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEqualToOtherFilterType() { - instance = new PathogenicityFilter(false); - Filter other = new FrequencyFilter(0.1f); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEqualToObjectOfDifferentType() { - Object other = "a string"; - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEqualToNullObject() { - Object other = null; - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testHashCode() { - instance = new PathogenicityFilter(false); - PathogenicityFilter other = new PathogenicityFilter(false); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PriorityScoreFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PriorityScoreFilterTest.java deleted file mode 100644 index 207f4d37a..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/PriorityScoreFilterTest.java +++ /dev/null @@ -1,176 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.BasePriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import org.hamcrest.CoreMatchers; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.hasItem; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class PriorityScoreFilterTest { - - private PriorityScoreFilter instance; - - private final PriorityType priorityType = PriorityType.PHIVE_PRIORITY; - private final float minPriorityScore = 0.8f; - - private Gene gene; - - @Before - public void setUp() { - instance = new PriorityScoreFilter(priorityType, minPriorityScore); - gene = new Gene("GENE1", 12345); - } - - private void assertPasses(FilterResult result) { - assertThat(result.passedFilter(), is(true)); - assertThat(result.getResultStatus(), equalTo(FilterResultStatus.PASS)); - assertThat(result.getFilterType(), equalTo(instance.getFilterType())); - } - - private void assertFails(FilterResult result) { - assertThat(result.passedFilter(), is(false)); - assertThat(result.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - assertThat(result.getFilterType(), equalTo(instance.getFilterType())); - } - - @Test - public void testGetPriorityType() { - assertThat(instance.getPriorityType(), equalTo(priorityType)); - } - - @Test - public void testGetMinPriorityScore() { - assertThat(instance.getMinPriorityScore(), equalTo(minPriorityScore)); - } - - @Test - public void testGetFilterType() { - assertThat(instance.getFilterType(), equalTo(FilterType.PRIORITY_SCORE_FILTER)); - } - - @Test - public void testRunFilter_FailsGeneWithWrongPriorityType_ScoreSameAsThreshold() { - PriorityResult priorityResult = new BasePriorityResult(PriorityType.OMIM_PRIORITY, minPriorityScore); - gene.addPriorityResult(priorityResult); - - FilterResult result = instance.runFilter(gene); - - assertFails(result); - } - - @Test - public void testRunFilter_PassesGeneWithCorrectPriorityType_ScoreSameAsThreshold() { - PriorityResult priorityResult = new BasePriorityResult(priorityType, minPriorityScore); - gene.addPriorityResult(priorityResult); - - FilterResult result = instance.runFilter(gene); - - assertPasses(result); - } - - @Test - public void testRunFilter_PassesGeneWithCorrectPriorityType_ScoreOverThreshold() { - PriorityResult priorityResult = new BasePriorityResult(priorityType, minPriorityScore + 0.2f); - gene.addPriorityResult(priorityResult); - - FilterResult result = instance.runFilter(gene); - - assertPasses(result); - } - - @Test - public void testRunFilter_FailsGeneWithCorrectPriorityType_ScoreUnderThreshold() { - PriorityResult priorityResult = new BasePriorityResult(priorityType, minPriorityScore - 0.2f); - gene.addPriorityResult(priorityResult); - - FilterResult result = instance.runFilter(gene); - - assertFails(result); - } - - @Test - public void testRunFilter_VariantInFailedGeneAlsoFailsTheFilter() { - PriorityResult priorityResult = new BasePriorityResult(priorityType, minPriorityScore - 0.2f); - gene.addPriorityResult(priorityResult); - VariantEvaluation variant = new VariantEvaluation.VariantBuilder(1, 1, "A", "T").build(); - gene.addVariant(variant); - - FilterResult result = instance.runFilter(gene); - - assertFails(result); - assertThat(variant.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(false)); - assertThat(variant.getFailedFilterTypes(), hasItem(FilterType.PRIORITY_SCORE_FILTER)); - } - - @Test - public void testRunFilter_FailsGeneWithNoSetPriorityScore() { - FilterResult result = instance.runFilter(gene); - - assertFails(result); - } - - - @Test - public void testHashCode() { - PriorityScoreFilter other = new PriorityScoreFilter(priorityType, minPriorityScore); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - - @Test - public void testEquals() { - PriorityScoreFilter other = new PriorityScoreFilter(priorityType, minPriorityScore); - assertThat(instance.equals(other), is(true)); - - } - - @Test - public void testNotEquals_differentScore() { - PriorityScoreFilter other = new PriorityScoreFilter(priorityType, minPriorityScore + .03f); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEquals_differentPrioritiser() { - PriorityScoreFilter other = new PriorityScoreFilter(PriorityType.NONE, minPriorityScore); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEqualOtherObject() { - String string = "string"; - assertThat(instance.equals(string), is(false)); - assertThat(string.equals(instance), is(false)); - - } - - @Test - public void testNotEqualNull() { - Object object = null; - assertThat(instance.equals(object), is(false)); - } - - @Test - public void testToString() { - assertThat(instance.toString(), equalTo("PriorityScoreFilter{priorityType=PHIVE_PRIORITY, minPriorityScore=0.8}")); - } - -} - diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/QualityFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/QualityFilterTest.java deleted file mode 100644 index ab43d9098..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/QualityFilterTest.java +++ /dev/null @@ -1,115 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.VariantEvaluation.VariantBuilder; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; - -import org.junit.Before; -import org.junit.Test; - -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class QualityFilterTest { - - private QualityFilter instance; - - private static final double MIN_QUAL_THRESHOLD = 3.0f; - private static final double OVER_THRESHOLD = MIN_QUAL_THRESHOLD + 1.0f; - private static final double UNDER_THRESHOLD = MIN_QUAL_THRESHOLD - 1.0f; - - private static VariantEvaluation highQualityPassesFilter; - private static VariantEvaluation lowQualityFailsFilter; - - @Before - public void setUp() { - - highQualityPassesFilter = testVariantBuilder().quality(OVER_THRESHOLD).build(); - lowQualityFailsFilter = testVariantBuilder().quality(UNDER_THRESHOLD).build(); - - instance = new QualityFilter(MIN_QUAL_THRESHOLD); - } - - private VariantBuilder testVariantBuilder() { - return new VariantEvaluation.VariantBuilder(1, 1, "A", "T"); - } - - @Test - public void testGetMimimumQualityThreshold() { - assertThat(instance.getMimimumQualityThreshold(), equalTo(MIN_QUAL_THRESHOLD)); - } - - @Test - public void testGetFilterType() { - assertThat(instance.getFilterType(), equalTo(FilterType.QUALITY_FILTER)); - } - - @Test(expected = IllegalArgumentException.class) - public void filterThrowIllegalArgumentExceptionWhenInitialisedWithNegativeValue() { - instance = new QualityFilter(-1); - } - - @Test - public void testFilterVariantOfHighQualityPassesFilter() { - FilterResult filterResult = instance.runFilter(highQualityPassesFilter); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testFilterVariantOfLowQualityFailsFilter() { - FilterResult filterResult = instance.runFilter(lowQualityFailsFilter); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - } - - @Test - public void testPassesFilterOverThresholdIsTrue() { - assertThat(instance.overQualityThreshold(OVER_THRESHOLD), is(true)); - } - - @Test - public void testPassesFilterUnderThresholdIsFalse() { - assertThat(instance.overQualityThreshold(UNDER_THRESHOLD), is(false)); - } - - @Test - public void testHashCode() { - VariantFilter qualityFilter = new QualityFilter(MIN_QUAL_THRESHOLD); - assertThat(instance.hashCode(), equalTo(qualityFilter.hashCode())); - } - - @Test - public void testNotEqualNull() { - Object obj = null; - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testNotEqualAnotherClass() { - Object obj = new String(); - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testNotEqualToOtherWithDifferentQualityThreshold() { - Object obj = new QualityFilter(8.0f); - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testEqualToOtherWithSameQualityThreshold() { - Object obj = new QualityFilter(MIN_QUAL_THRESHOLD); - assertThat(instance.equals(obj), is(true)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/RegulatoryFeatureFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/RegulatoryFeatureFilterTest.java deleted file mode 100644 index 5a2e4f408..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/RegulatoryFeatureFilterTest.java +++ /dev/null @@ -1,45 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author jj8 - */ -public class RegulatoryFeatureFilterTest { - - public RegulatoryFeatureFilterTest() { - } - - @Before - public void setUp() { - } - - @Test - public void testGetFilterType() { - } - - @Test - public void testRunFilter() { - } - - @Test - public void testHashCode() { - } - - @Test - public void testEquals() { - } - - @Test - public void testToString() { - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/StubPassAllVariantFilter.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/StubPassAllVariantFilter.java deleted file mode 100644 index e18823c52..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/StubPassAllVariantFilter.java +++ /dev/null @@ -1,62 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import java.util.Objects; - -/** - * Stub class passes all VariantEvaluations through a Filter of the declared - * FilterType. - * - * @author Jules Jacobsen - */ -public class StubPassAllVariantFilter implements VariantFilter { - - private final FilterType mockFilterType; - - public StubPassAllVariantFilter(FilterType mockFilterType) { - this.mockFilterType = mockFilterType; - } - - @Override - public FilterResult runFilter(VariantEvaluation variantEvaluation) { - return new PassFilterResult(mockFilterType); - } - - @Override - public FilterType getFilterType() { - return mockFilterType; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 89 * hash + Objects.hashCode(this.mockFilterType); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final StubPassAllVariantFilter other = (StubPassAllVariantFilter) obj; - if (this.mockFilterType != other.mockFilterType) { - return false; - } - return true; - } - - @Override - public String toString() { - return "StubVariantFilter{" + "mockFilterType=" + mockFilterType + '}'; - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/VariantEffectFilterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/VariantEffectFilterTest.java deleted file mode 100644 index 2a2206ae9..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/VariantEffectFilterTest.java +++ /dev/null @@ -1,93 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import java.util.EnumSet; -import java.util.Set; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class VariantEffectFilterTest { - - private VariantEffectFilter instance; - private Set offTargetVariantEffects; - - private VariantEvaluation missensePassesFilter; - private VariantEvaluation synonymousFailsFilter; - - @Before - public void setUp() { - offTargetVariantEffects = EnumSet.of(VariantEffect.SYNONYMOUS_VARIANT); - - instance = new VariantEffectFilter(offTargetVariantEffects); - - missensePassesFilter = testVariantBuilder().variantEffect(VariantEffect.MISSENSE_VARIANT).build(); - synonymousFailsFilter = testVariantBuilder().variantEffect(VariantEffect.SYNONYMOUS_VARIANT).build(); - } - - private VariantEvaluation.VariantBuilder testVariantBuilder() { - return new VariantEvaluation.VariantBuilder(1, 1, "A", "T"); - } - - @Test - public void testGetOffTargetTypes() { - assertThat(instance.getOffTargetVariantTypes(), equalTo(offTargetVariantEffects)); - } - - @Test - public void testGetFilterType() { - assertThat(instance.getFilterType(), equalTo(FilterType.VARIANT_EFFECT_FILTER)); - } - - @Test - public void testMissenseVariantPassesFilter() { - FilterResult filterResult = instance.runFilter(missensePassesFilter); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); - } - - @Test - public void testSynonymousVariantFailsFilter() { - FilterResult filterResult = instance.runFilter(synonymousFailsFilter); - - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); - } - - @Test - public void testNotEqualNull() { - Object obj = null; - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testNotEqualOtherFilter() { - PathogenicityFilter obj = new PathogenicityFilter(true); - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testEqualOtherTagetFilter() { - VariantEffectFilter obj = new VariantEffectFilter(offTargetVariantEffects); - assertThat(instance.equals(obj), is(true)); - } - - @Test - public void testHashCode() { - VariantEffectFilter anotherTargetFilter = new VariantEffectFilter(offTargetVariantEffects); - assertThat(instance.hashCode(), equalTo(anotherTargetFilter.hashCode())); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/DiseaseIdentifierTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/DiseaseIdentifierTest.java deleted file mode 100644 index 7d9679dd7..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/DiseaseIdentifierTest.java +++ /dev/null @@ -1,137 +0,0 @@ -/* - * Copyright © 2011-2013 EMBL - European Bioinformatics Institute - * and Genome Research Limited - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.HashSet; -import java.util.List; -import java.util.Set; -import org.junit.After; -import org.junit.AfterClass; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author jj8 - */ -public class DiseaseIdentifierTest { - - public DiseaseIdentifierTest() { - } - - @BeforeClass - public static void setUpClass() { - } - - @AfterClass - public static void tearDownClass() { - } - - @Before - public void setUp() { - } - - @After - public void tearDown() { - } - - @Test - public void testCompareTo() { - - DiseaseIdentifier decypherDisease1 = new DiseaseIdentifier("DECYPHER:1234"); - DiseaseIdentifier omimDisease1 = new DiseaseIdentifier("OMIM:1234"); - DiseaseIdentifier omimDisease2 = new DiseaseIdentifier("OMIM:1235"); - DiseaseIdentifier orphanetDisease1 = new DiseaseIdentifier("ORPHANET:1234"); - - List diseaseList = new ArrayList(); - - diseaseList.add(orphanetDisease1); - diseaseList.add(omimDisease1); - diseaseList.add(decypherDisease1); - diseaseList.add(omimDisease2); - - List expectedDiseaseList = new ArrayList(); - - expectedDiseaseList.add(decypherDisease1); - expectedDiseaseList.add(omimDisease1); - expectedDiseaseList.add(omimDisease2); - expectedDiseaseList.add(orphanetDisease1); - - - Collections.sort(diseaseList); - - for (DiseaseIdentifier diseaseIdentifier : expectedDiseaseList) { - System.out.println(diseaseIdentifier); - } - - assertTrue(diseaseList.equals(expectedDiseaseList)); - } - - @Test - public void testEquals() { - DiseaseIdentifier decypherDisease1 = new DiseaseIdentifier("DECYPHER:1234"); - DiseaseIdentifier decypherDisease2 = new DiseaseIdentifier("DECYPHER:1234"); - - assertTrue(decypherDisease1.equals(decypherDisease2)); - - Set diseaseSet = new HashSet(); - diseaseSet.add(decypherDisease1); - diseaseSet.add(decypherDisease2); - - assertEquals(1, diseaseSet.size()); - } - - @Test - public void testGetOmimExternalUri() { - DiseaseIdentifier diseaseIdentifier = new DiseaseIdentifier("OMIM:101600"); - String expected = "http://omim.org/entry/101600"; - String result = diseaseIdentifier.getExternalUri(); - System.out.println(result); - assertEquals(expected, result); - } - - @Test - public void testGetDecipherExternalUri() { - DiseaseIdentifier diseaseIdentifier = new DiseaseIdentifier("DECIPHER:18"); - String expected = "https://decipher.sanger.ac.uk/syndrome/18"; - String result = diseaseIdentifier.getExternalUri(); - System.out.println(result); - assertEquals(expected, result); - } - - @Test - public void testGetOrphanetExternalUri() { - DiseaseIdentifier diseaseIdentifier = new DiseaseIdentifier("ORPHANET:287"); - String expected = "http://www.orpha.net/consor/cgi-bin/OC_Exp.php?Lng=GB&Expert=287"; - String result = diseaseIdentifier.getExternalUri(); - System.out.println(result); - assertEquals(expected, result); - } - - @Test - public void testGetUnknownExternalUri() { - DiseaseIdentifier diseaseIdentifier = new DiseaseIdentifier("WIBBLE:287"); - String expected = ""; - String result = diseaseIdentifier.getExternalUri(); - System.out.println(result); - assertEquals(expected, result); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/DiseaseTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/DiseaseTest.java deleted file mode 100644 index dad17817a..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/DiseaseTest.java +++ /dev/null @@ -1,150 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.ArrayList; -import java.util.List; -import org.junit.After; -import org.junit.AfterClass; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class DiseaseTest { - - /** - * Test constructor, of class Disease. - */ - @Test - public void testConstructorDiseaseId() { - String expResult = "OMIM:1234"; - Disease instance = new Disease(expResult); - instance.setDiseaseIdentifier(new DiseaseIdentifier(expResult)); - String result = instance.getDiseaseId(); - assertEquals(expResult, result); - - } - - /** - * Test constructor, of class Disease. - */ - @Test - public void testConstructorDiseaseIdentifier() { - String expResult = "OMIM:1234"; - DiseaseIdentifier diseaseIdentifier = new DiseaseIdentifier(expResult); - Disease instance = new Disease(diseaseIdentifier); - - String result = instance.getDiseaseId(); - assertEquals(expResult, result); - - } - - /** - * Test of getDiseaseId method, of class Disease. - */ - @Test - public void testGetDiseaseId() { - Disease instance = new Disease(); - String expResult = "OMIM:1234"; - instance.setDiseaseIdentifier(new DiseaseIdentifier(expResult)); - String result = instance.getDiseaseId(); - assertEquals(expResult, result); - - } - - /** - * Test of getDiseaseIdentifier method, of class Disease. - */ - @Test - public void testGetSetDiseaseIdentifier() { - DiseaseIdentifier expResult = new DiseaseIdentifier("OMIM:1234"); - Disease instance = new Disease(); - instance.setDiseaseIdentifier(expResult); - DiseaseIdentifier result = instance.getDiseaseIdentifier(); - assertEquals(expResult, result); - - } - - /** - * Test of getTerm method, of class Disease. - */ - @Test - public void testGetSetTerm() { - Disease instance = new Disease(); - String expResult = "Wibble"; - instance.setTerm(expResult); - String result = instance.getTerm(); - assertEquals(expResult, result); - } - - /** - * Test of getPhenotypeTerms method, of class Disease. - */ - @Test - public void testGetSetPhenotypeTerms() { - Disease instance = new Disease(); - List expResult = new ArrayList<>(); - expResult.add(new PhenotypeTerm("HP:00001", "big nose", 1.0)); - instance.setPhenotypeTerms(expResult); - List result = instance.getPhenotypeTerms(); - assertEquals(expResult, result); - } - - /** - * Test of hashCode method, of class Disease. - */ - @Test - public void testHashCode() { - Disease instance = new Disease(new DiseaseIdentifier("OMIM:4321")); - Disease other = new Disease(new DiseaseIdentifier("OMIM:4321")); - int expResult = other.hashCode(); - int result = instance.hashCode(); - assertEquals(expResult, result); - } - - /** - * Test of equals method, of class Disease. - */ - @Test - public void testEquals() { - Disease other = new Disease(new DiseaseIdentifier("OMIM:4321")); - Disease instance = new Disease(new DiseaseIdentifier("OMIM:1234")); - boolean expResult = false; - boolean result = instance.equals(other); - assertEquals(expResult, result); - } - - /** - * Test of compareTo method, of class Disease. - */ - @Test - public void testCompareTo() { - Disease t = new Disease(new DiseaseIdentifier("OMIM:1234")); - Disease instance = new Disease(new DiseaseIdentifier("OMIM:1234")); - int expResult = 0; - int result = instance.compareTo(t); - assertEquals(expResult, result); - } - - /** - * Test of toString method, of class Disease. - */ - @Test - public void testToString() { - Disease instance = new Disease(new DiseaseIdentifier("OMIM:1234")); - instance.setTerm("WIBBLE"); - String expResult = "Disease{OMIM:1234 - WIBBLE}"; - String result = instance.toString(); - assertEquals(expResult, result); - - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneIdentifierTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneIdentifierTest.java deleted file mode 100644 index e06786588..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneIdentifierTest.java +++ /dev/null @@ -1,117 +0,0 @@ -/* - * Copyright © 2011-2013 EMBL - European Bioinformatics Institute - * and Genome Research Limited - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.ArrayList; -import java.util.Collections; -import java.util.List; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class GeneIdentifierTest { - - - @Test - public void testGetGeneSymbol_nullGeneSymbolInConstructorReturnsUnknownString() { - GeneIdentifier instance = new GeneIdentifier(null, "", ""); - assertEquals("UNKNOWN", instance.getGeneSymbol()); - } - - @Test - public void testGetGeneSymbol_emptyGeneSymbolStringInConstructorReturnsUnknownString() { - GeneIdentifier instance = new GeneIdentifier("", "", ""); - assertEquals("UNKNOWN", instance.getGeneSymbol()); - } - - /** - * Test of constructor for class GeneIdentifier. - */ - @Test - public void testGeneIdentifierAllFieldsOverloadedConstructor() { - String geneSymbol = "Fgfr2"; - String databaseIdentifier = "MGI"; - String databaseAccession = "95523"; - GeneIdentifier instance = new GeneIdentifier(geneSymbol, databaseIdentifier, databaseAccession); - String expResult = "Fgfr2{MGI:95523}"; - String result = instance.toString(); - assertEquals(expResult, result); - } - - /** - * Test of constructor for class GeneIdentifier. - */ - @Test - public void testGeneIdentifierParserOverloadedConstructor() { - String geneSymbol = "Fgfr2"; - String databaseCompoundIdentifier = "MGI:95523"; - GeneIdentifier instance = new GeneIdentifier(geneSymbol, databaseCompoundIdentifier); - String expResult = "Fgfr2{MGI:95523}"; - String result = instance.toString(); - assertEquals(expResult, result); - } - - /** - * Test of constructor for class GeneIdentifier. - */ - @Test - public void testGeneIdentifierParserOverloadedConstructorUnclassifiedHumanOrtholog() { - String geneSymbol = ""; - String databaseCompoundIdentifier = ""; - GeneIdentifier instance = new GeneIdentifier(geneSymbol, databaseCompoundIdentifier); - String expResult = "UNKNOWN{-:-}"; - String result = instance.toString(); - assertEquals(expResult, result); - } - - @Test - public void testCompareTo(){ - - GeneIdentifier gene1 = new GeneIdentifier("Fgfr1", "MGI:95524"); - GeneIdentifier gene2 = new GeneIdentifier("Fgfr2", "MGI:95523"); - - List genesList = new ArrayList(); - - genesList.add(gene2); - genesList.add(gene1); - - Collections.sort(genesList); - - assertEquals(gene1, genesList.get(0)); - } - - @Test - public void testGetMgiExternalUri() { - GeneIdentifier geneIdentifier = new GeneIdentifier("Fgfr3", "MGI:95524"); - String expected = "http://www.informatics.jax.org/accession/MGI:95524"; - String result = geneIdentifier.getExternalUri(); - System.out.println(result); - assertEquals(expected, result); - } - - @Test - public void testGetHgncExternalUri() { - GeneIdentifier geneIdentifier = new GeneIdentifier("ENAM", "HGNC:3344"); - String expected = "http://www.genenames.org/data/hgnc_data.php?hgnc_id=3344"; - String result = geneIdentifier.getExternalUri(); - System.out.println(result); - assertEquals(expected, result); - } -} \ No newline at end of file diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneModelTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneModelTest.java deleted file mode 100644 index 4bf1f63de..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneModelTest.java +++ /dev/null @@ -1,166 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class GeneModelTest { - - private GeneModel instance; - private final Organism organism = Organism.MOUSE; - private final double score = 1.0d; - private final int entrezGeneId = 12345; - private final String humanGeneSymbol = "GENE1"; - private final String modelId = "gene1_model1"; - private final String modelGeneId = "MGI:12345"; - private final String modelGeneSymbol = "Gene1"; - private final List modelPhenotypeIds = new ArrayList<>(Arrays.asList("HP:0000000", "HP:0000001")); - - @Before - public void setUp() { - //TODO: want it to work more like this I think - although a HUMAN modelOrganism would indicate a DiseaseModel -// humanGeneId = new GeneIdentifier(modelGeneId, modelGeneSymbol); -// modelGeneId = new GeneIdentifier(modelGeneId, modelGeneSymbol); -// diseaseId = new DiseaseIdentifier(diseaseId, diseaseTerm); -// modelOrganism = Organism.HUMAN -// instance = new GeneModel(modelOrganism, humanGeneId, modelGeneId, modelPhenotypeIds); -// instance = new DiseaseModel(modelOrganism, humanGeneId, diseaseId, modelPhenotypeIds); - instance = new GeneModel(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); - } - - @Test - public void testScoreIsZeroByDefault() { - assertThat(instance.getScore(), equalTo(0d)); - } - - @Test - public void testCanSetScore() { - instance.setScore(score); - assertThat(instance.getScore(), equalTo(score)); - } - - @Test - public void testGetEntrezGeneId() { - assertThat(instance.getEntrezGeneId(), equalTo(entrezGeneId)); - } - - @Test - public void testGetHumanGeneSymbol() { - assertThat(instance.getHumanGeneSymbol(), equalTo(humanGeneSymbol)); - } - - @Test - public void testGetModelId() { - assertThat(instance.getModelId(), equalTo(modelId)); - } - - @Test - public void testGetModelGeneSymbol() { - assertThat(instance.getModelGeneSymbol(), equalTo(modelGeneSymbol)); - } - - @Test - public void testGetPhenotypeIds() { - assertThat(instance.getPhenotypeIds(), equalTo(modelPhenotypeIds)); - } - - @Test - public void testBestPhenotypeMatchesIsEmptyByDefault() { - assertThat(instance.getBestPhenotypeMatchForTerms().isEmpty(), is(true)); - } - - @Test - public void testaddMatchIfWhenAbsent() { - PhenotypeMatch match = new PhenotypeMatch(null, null, score, 1.0, null); - instance.addMatchIfAbsentOrBetterThanCurrent(match); - assertThat(instance.getBestPhenotypeMatchForTerms().containsValue(match), is(true)); - } - - @Test - public void testaddMatchWhenBetterThanCurrent() { - PhenotypeMatch match = new PhenotypeMatch(null, null, score, 0.5, null); - instance.addMatchIfAbsentOrBetterThanCurrent(match); - - PhenotypeMatch betterMatch = new PhenotypeMatch(null, null, score, 1.0, null); - instance.addMatchIfAbsentOrBetterThanCurrent(betterMatch); - - assertThat(instance.getBestPhenotypeMatchForTerms().containsValue(match), is(false)); - assertThat(instance.getBestPhenotypeMatchForTerms().containsValue(betterMatch), is(true)); - } - - - @Test - public void testaddMatchWhenNotBetterThanCurrent() { - PhenotypeMatch betterMatch = new PhenotypeMatch(null, null, score, 1.0, null); - instance.addMatchIfAbsentOrBetterThanCurrent(betterMatch); - - PhenotypeMatch match = new PhenotypeMatch(null, null, score, 0.5, null); - instance.addMatchIfAbsentOrBetterThanCurrent(match); - - assertThat(instance.getBestPhenotypeMatchForTerms().containsValue(match), is(false)); - assertThat(instance.getBestPhenotypeMatchForTerms().containsValue(betterMatch), is(true)); - } - - @Test - public void testHashCode() { - GeneModel other = new GeneModel(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - - @Test - public void testEquals() { - GeneModel other = new GeneModel(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); - assertThat(instance.equals(other), is(true)); - } - - @Test - public void testNotEqualsGeneId() { - GeneModel other = new GeneModel(modelId, organism, 54321, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEqualsGeneSymbol() { - GeneModel other = new GeneModel(modelId, organism, entrezGeneId, "GENE2", modelGeneId, modelGeneSymbol, modelPhenotypeIds); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEqualsModelId() { - GeneModel other = new GeneModel("different_model", organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEqualsPhenotypes() { - GeneModel other = new GeneModel(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, null); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testNotEqualsOrganism() { - GeneModel other = new GeneModel(modelId, Organism.HUMAN, entrezGeneId, humanGeneSymbol, modelId, modelGeneSymbol, null); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testToString() { - instance.setScore(score); - assertThat(instance.toString(), equalTo("GeneModel{score=" + score + ", entrezGeneId=" + entrezGeneId + ", humanGeneSymbol=" + humanGeneSymbol + ", modelId=" + modelId + ", modelSymbol=" + modelGeneSymbol + ", phenotypeIds=" + modelPhenotypeIds + '}')); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneTest.java deleted file mode 100644 index 92d80f8ae..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneTest.java +++ /dev/null @@ -1,449 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.exomiser.core.filters.FailFilterResult; -import de.charite.compbio.exomiser.core.filters.FilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.filters.PassFilterResult; -import de.charite.compbio.exomiser.core.prioritisers.ExomeWalkerPriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; - -import java.util.*; -import org.hamcrest.CoreMatchers; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.notNullValue; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; - -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class GeneTest { - - private Gene instance; - - private static final String GENE1_SYMBOL = "GENE1"; - private static final int GENE1_ENTREZ_GENE_ID = 1234567; - - private static final String GENE2_SYMBOL = "GENE2"; - private static final int GENE2_ENTREZ_GENE_ID = 654321; - - private VariantEvaluation variantEvaluation1; - private VariantEvaluation variantEvaluation2; - - private static final FilterResult PASS_VARIANT_FILTER_RESULT = new PassFilterResult(FilterType.FREQUENCY_FILTER); - private static final FilterResult FAIL_VARIANT_FILTER_RESULT = new FailFilterResult(FilterType.FREQUENCY_FILTER); - //there's nothing magical about a FilterResult being a Gene or Variant filter result, it's where/how they are used which makes the difference. - //their type is used for reporting which filter was passed or failed. - private static final FilterResult PASS_GENE_FILTER_RESULT = new PassFilterResult(FilterType.INHERITANCE_FILTER); - private static final FilterResult FAIL_GENE_FILTER_RESULT = new FailFilterResult(FilterType.INHERITANCE_FILTER); - - @Before - public void setUp() { - // variant1 is the first one in in FGFR2 gene - variantEvaluation1 = new VariantEvaluation.VariantBuilder(10, 123353320, "C", "G").build(); - // variant2 is the second one in in FGFR2 gene - variantEvaluation2 = new VariantEvaluation.VariantBuilder(10, 123353325, "T", "A").build(); - - instance = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - } - - @Test - public void testConstructorSetsInstanceVariables() { - instance.addVariant(variantEvaluation1); - - List expectedVariantEvaluations = new ArrayList<>(); - expectedVariantEvaluations.add(variantEvaluation1); - - assertThat(instance.getGeneSymbol(), equalTo(GENE1_SYMBOL)); - assertThat(instance.getEntrezGeneID(), equalTo(GENE1_ENTREZ_GENE_ID)); - assertThat(instance.getVariantEvaluations(), equalTo(expectedVariantEvaluations)); - assertThat(instance.getNumberOfVariants(), equalTo(1)); - - assertThat(instance.passedFilters(), is(true)); - assertThat(instance.getPriorityResults().isEmpty(), is(true)); - - assertThat(instance.getFilterScore(), equalTo(0f)); - assertThat(instance.getPriorityScore(), equalTo(0f)); - assertThat(instance.getCombinedScore(), equalTo(0f)); - } - - @Test - public void testGenesWithDifferentGeneSymbolsAreComparedByGeneSymbolWhenScoresAreEqual() { - Gene gene1 = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - Gene gene2 = new Gene(GENE2_SYMBOL, GENE2_ENTREZ_GENE_ID); - - assertTrue(gene1.compareTo(gene2) < 0); - assertTrue(gene2.compareTo(gene1) > 0); - } - - @Test - public void testGenesWithDifferentGeneSymbolsAreComparedByCombinedScore() { - Gene gene1 = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - Gene gene2 = new Gene(GENE2_SYMBOL, GENE2_ENTREZ_GENE_ID); - - gene1.setCombinedScore(0.0f); - gene2.setCombinedScore(1.0f); - - assertTrue(gene1.compareTo(gene2) > 0); - assertTrue(gene2.compareTo(gene1) < 0); - } - - @Test - public void testGenesWithSameGeneSymbolsAreComparedByGeneSymbolWhenScoresAreEqual() { - Gene gene1 = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - Gene gene2 = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - - assertTrue(gene1.compareTo(gene2) == 0); - assertTrue(gene2.compareTo(gene1) == 0); - } - - @Test - public void testGenesWithSameGeneSymbolsAreComparedByCombinedScore() { - Gene gene1 = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - Gene gene2 = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - - gene1.setCombinedScore(0.0f); - gene2.setCombinedScore(1.0f); - - assertTrue(gene1.compareTo(gene2) > 0); - assertTrue(gene2.compareTo(gene1) < 0); - } - - @Test - public void testPassesFilters_TrueWhenNoFiltersHaveBeenApplied() { - assertThat(instance.passedFilters(), is(true)); - } - - @Test - public void testPassedFilters_TrueWhenPassesGeneFilterOnly() { - instance.addFilterResult(PASS_GENE_FILTER_RESULT); - assertThat(instance.passedFilters(), is(true)); - } - - @Test - public void testPassedFilters_FalseWhenFailsGeneFilterOnly() { - instance.addFilterResult(FAIL_GENE_FILTER_RESULT); - assertThat(instance.passedFilters(), is(false)); - } - - @Test - public void testPassedFilters_TrueWhenPassesGeneAndVariantFilters() { - instance.addFilterResult(PASS_GENE_FILTER_RESULT); - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.passedFilters(), is(true)); - } - - @Test - public void testPassedFilters_FalseWhenFailsGeneFilterButPassesVariantFilter() { - instance.addFilterResult(FAIL_GENE_FILTER_RESULT); - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.passedFilters(), is(false)); - } - - @Test - public void testPassedFilters_FalseWhenPassesGeneFilterButFailsVariantFilters() { - instance.addFilterResult(PASS_GENE_FILTER_RESULT); - variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.passedFilters(), is(false)); - } - - @Test - public void testPassedFilters_TrueWhenPassesGeneFilterAndAtLeastOneVariantFilter() { - instance.addFilterResult(PASS_GENE_FILTER_RESULT); - variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - variantEvaluation2.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation2); - assertThat(instance.passedFilters(), is(true)); - } -//TODO: behaviour under consideration - better in the gene or the gene filter runner? Should it apply to all gene filters? -// @Test -// public void testAddingFilterResultToGeneAppliesThatResultToAllVariantsOfTheGene() { -// //set-up gene -// variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); -// instance.addVariant(variantEvaluation1); -// //simluate filtering -// instance.addFilterResult(PASS_GENE_FILTER_RESULT); -// -// //test the variant still fails the original filter -// assertThat(variantEvaluation1.passedFilter(FAIL_VARIANT_FILTER_RESULT.getFilterType()), is(false)); -// //but that the variant also passes the gene filter - this is OK behaviour as Variants fail fast - i.e. we really only care if a variant passed ALL filters -// assertThat(variantEvaluation1.passedFilter(PASS_GENE_FILTER_RESULT.getFilterType()), is(true)); -// } - - @Test - public void testPassedFilter_TrueWhenGenePassesAndVariantsFailFilterOfThatType() { - instance.addFilterResult(PASS_GENE_FILTER_RESULT); - variantEvaluation1.addFilterResult(FAIL_GENE_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.passedFilter(PASS_GENE_FILTER_RESULT.getFilterType()), is(true)); - } - - @Test - public void testPassedFilter_TrueWhenGeneUnfilteredAndVariantPassesFilterOfThatType() { - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.passedFilter(PASS_VARIANT_FILTER_RESULT.getFilterType()), is(true)); - } - - @Test - public void testPassedFilter_FalseWhenGeneUnfilteredAndVariantsFailFilterOfThatType() { - variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.passedFilter(FAIL_VARIANT_FILTER_RESULT.getFilterType()), is(false)); - } - - @Test - public void testPassedFilter_TrueWhenGeneUnfilteredAndAtLeastOneVariantPassesFilterOfThatType() { - variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - variantEvaluation2.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation2); - assertThat(instance.passedFilter(PASS_VARIANT_FILTER_RESULT.getFilterType()), is(true)); - } - - @Test - public void testPassesFilters_TrueWhenVariantPassesFilter() { - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.passedFilters(), is(true)); - } - - @Test - public void testPassesFilters_TrueWhenAtLeastOneVariantPassesFilter() { - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - - variantEvaluation2.addFilterResult(FAIL_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation2); - - assertThat(instance.passedFilters(), is(true)); - } - - @Test - public void testPassesFilters_FalseWhenVariantFailsFilter() { - variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.passedFilters(), is(false)); - } - - @Test - public void testGetPassedVariantEvaluationsIsEmptyWhenVariantFailsFilter() { - variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - assertThat(instance.getPassedVariantEvaluations().isEmpty(), is(true)); - } - - @Test - public void testGetPassedVariantEvaluations() { - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation1); - - variantEvaluation2.addFilterResult(FAIL_VARIANT_FILTER_RESULT); - instance.addVariant(variantEvaluation2); - - List passedVariantEvaluations = Arrays.asList(variantEvaluation1); - - assertThat(instance.getPassedVariantEvaluations(), equalTo(passedVariantEvaluations)); - } - - @Test - public void testAddVariant_AfterGeneIsFilteredAppliesPassGeneFilterResultsToVariant() { - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addFilterResult(new PassFilterResult(FilterType.PRIORITY_SCORE_FILTER)); - - instance.addVariant(variantEvaluation1); - - assertThat(variantEvaluation1.passedFilters(), is(true)); - assertThat(variantEvaluation1.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(true)); - } - - @Test - public void testAddVariant_AfterGeneIsFilteredAppliesFailGeneFilterResultsToVariant() { - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - instance.addFilterResult(new FailFilterResult(FilterType.PRIORITY_SCORE_FILTER)); - - instance.addVariant(variantEvaluation1); - - assertThat(variantEvaluation1.passedFilters(), is(false)); - assertThat(variantEvaluation1.passedFilter(PASS_VARIANT_FILTER_RESULT.getFilterType()), is(true)); - assertThat(variantEvaluation1.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(false)); - } - - @Test - public void testAddVariant_AfterGeneIsFilteredDoesNotApplyInheritanceFilterResultToVariant() { - variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); - - instance.addFilterResult(new PassFilterResult(FilterType.PRIORITY_SCORE_FILTER)); - instance.addFilterResult(new FailFilterResult(FilterType.INHERITANCE_FILTER)); - - instance.addVariant(variantEvaluation1); - - assertThat(variantEvaluation1.passedFilters(), is(true)); - assertThat(variantEvaluation1.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(true)); - assertThat(variantEvaluation1.getFailedFilterTypes().contains(FilterType.INHERITANCE_FILTER), is(false)); - } - - @Test - public void testCanAddAndRetrievePriorityScoreByPriorityType() { - PriorityResult omimPriorityResult = new OMIMPriorityResult(); - PriorityType priorityType = PriorityType.OMIM_PRIORITY; - - instance.addPriorityResult(omimPriorityResult); - instance.addPriorityResult(new ExomeWalkerPriorityResult(0.0d)); - assertThat(instance.getPriorityResult(priorityType), equalTo(omimPriorityResult)); - } - - @Test - public void canInheritanceModes() { - assertThat(instance.getInheritanceModes(), notNullValue()); - assertThat(instance.getInheritanceModes().isEmpty(), is(true)); - } - - @Test - public void canSetAndGetInheritanceModes() { - Set inheritanceModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT, ModeOfInheritance.X_DOMINANT); - - instance.setInheritanceModes(inheritanceModes); - - assertThat(instance.getInheritanceModes(), equalTo(inheritanceModes)); - } - - @Test - public void isConsistentWithInheritanceModes() { - Set inheritanceModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT, ModeOfInheritance.AUTOSOMAL_RECESSIVE, - ModeOfInheritance.X_RECESSIVE); - - instance.setInheritanceModes(inheritanceModes); - - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.X_RECESSIVE), is(true)); - assertThat(instance.isCompatibleWithDominant(), is(true)); - assertThat(instance.isCompatibleWithRecessive(), is(true)); - assertThat(instance.isConsistentWithX(), is(true)); - } - - @Test - public void isConsistentWithDominantInheritanceModes() { - Set inheritanceModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT); - - instance.setInheritanceModes(inheritanceModes); - - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.X_RECESSIVE), is(false)); - assertThat(instance.isCompatibleWithDominant(), is(true)); - assertThat(instance.isCompatibleWithRecessive(), is(false)); - assertThat(instance.isConsistentWithX(), is(false)); - } - - @Test - public void isConsistentWithRecessiveInheritanceModes() { - Set inheritanceModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - instance.setInheritanceModes(inheritanceModes); - - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.X_RECESSIVE), is(false)); - assertThat(instance.isCompatibleWithDominant(), is(false)); - assertThat(instance.isCompatibleWithRecessive(), is(true)); - assertThat(instance.isConsistentWithX(), is(false)); - } - - @Test - public void isConsistentWithXRecessiveInheritanceModes() { - Set inheritanceModes = EnumSet.of(ModeOfInheritance.X_RECESSIVE); - - instance.setInheritanceModes(inheritanceModes); - - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.X_RECESSIVE), is(true)); - assertThat(instance.isCompatibleWithDominant(), is(false)); - assertThat(instance.isCompatibleWithRecessive(), is(false)); - assertThat(instance.isConsistentWithX(), is(true)); - } - - @Test - public void testIsCompatibleWithX_falseWhenVariantsIsEmpty() { - instance = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - assertThat(instance.isXChromosomal(), is(false)); - } - - @Test - public void testIsCompatibleWithX_falseWhenVariantIsNotCompatibleWithX() { - instance = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - instance.addVariant(new VariantEvaluation.VariantBuilder(1, 1, "A", "T").build()); - assertThat(instance.isXChromosomal(), is(false)); - } - - @Test - public void testIsCompatibleWithX_trueWhenVariantIsCompatibleWithX() { - int X_CHROMOSOME = 23; - instance = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - instance.addVariant(new VariantEvaluation.VariantBuilder(X_CHROMOSOME, 1, "A", "T").build()); - assertThat(instance.isXChromosomal(), is(true)); - } - - @Test - public void testIsCompatibleWithY_falseWhenVariantsIsEmpty() { - instance = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - assertThat(instance.isYChromosomal(), is(false)); - } - - @Test - public void testIsCompatibleWithY_falseWhenVariantIsNotCompatibleWithX() { - instance = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - instance.addVariant(new VariantEvaluation.VariantBuilder(1, 1, "A", "T").build()); - assertThat(instance.isYChromosomal(), is(false)); - } - - @Test - public void testIsCompatibleWithY_trueWhenVariantIsCompatibleWithX() { - int Y_CHROMOSOME = 24; - instance = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); - instance.addVariant(new VariantEvaluation.VariantBuilder(Y_CHROMOSOME, 1, "A", "T").build()); - assertThat(instance.isYChromosomal(), is(true)); - } - - @Test - public void testCanSetAndChangePriorityScore() { - float firstScore = 0f; - instance.setPriorityScore(firstScore); - assertThat(instance.getPriorityScore(), equalTo(firstScore)); - - float secondScore = 1.0f; - instance.setPriorityScore(secondScore); - assertThat(instance.getPriorityScore(), equalTo(secondScore)); - } - - @Test - public void testCanSetAndChangeFilterScore() { - float firstScore = 0f; - instance.setFilterScore(firstScore); - assertThat(instance.getFilterScore(), equalTo(firstScore)); - - float secondScore = 1.0f; - instance.setFilterScore(secondScore); - assertThat(instance.getFilterScore(), equalTo(secondScore)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/InheritanceModeTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/InheritanceModeTest.java deleted file mode 100644 index be2e7e354..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/InheritanceModeTest.java +++ /dev/null @@ -1,97 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model; - -import org.junit.After; -import org.junit.AfterClass; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author jj8 - */ -public class InheritanceModeTest { - - public InheritanceModeTest() { - } - - @BeforeClass - public static void setUpClass() { - } - - @AfterClass - public static void tearDownClass() { - } - - @Before - public void setUp() { - } - - @After - public void tearDown() { - } - - /** - * Test of valueOf method, of class InheritanceMode. - */ - @Test - public void testValueOf() { - String name = "X_RECESSIVE"; - InheritanceMode expResult = InheritanceMode.X_RECESSIVE; - InheritanceMode result = InheritanceMode.valueOf(name); - assertEquals(expResult, result); - } - - /** - * Test of getHpoTerm method, of class InheritanceMode. - */ - @Test - public void testGetHpoTerm() { - InheritanceMode instance = InheritanceMode.RECESSIVE; - String expResult = "HP:0000007"; - String result = instance.getHpoTerm(); - assertEquals(expResult, result); - } - - /** - * Test of getInheritanceCode method, of class InheritanceMode. - */ - @Test - public void testGetInheritanceCode() { - InheritanceMode instance = InheritanceMode.MITOCHONDRIAL; - String expResult = "M"; - String result = instance.getInheritanceCode(); - assertEquals(expResult, result); - } - - /** - * Test of valueOfInheritanceCode method, of class InheritanceMode. - */ - @Test - public void testValueOfInheritanceCode() { - String inheritanceCode = "P"; - InheritanceMode expResult = InheritanceMode.POLYGENIC; - InheritanceMode result = InheritanceMode.valueOfInheritanceCode(inheritanceCode); - assertEquals(expResult, result); - - } - - /** - * Test of valueOfHpoTerm method, of class InheritanceMode. - */ - @Test - public void testValueOfHpoTerm() { - String hpoTerm = "kjghdgh"; - InheritanceMode expResult = InheritanceMode.UNKNOWN; - InheritanceMode result = InheritanceMode.valueOfHpoTerm(hpoTerm); - assertEquals(expResult, result); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/OrganismTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/OrganismTest.java deleted file mode 100644 index 5dc47550a..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/OrganismTest.java +++ /dev/null @@ -1,56 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import java.util.Arrays; -import static org.hamcrest.CoreMatchers.equalTo; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class OrganismTest { - - private Organism instance; - - private final Organism[] values = {Organism.HUMAN, Organism.MOUSE, Organism.FISH}; - - @Test - public void testValues() { - assertThat(Organism.values(), equalTo(values)); - } - - @Test - public void testValueOf() { - assertThat(Organism.valueOf("HUMAN"), equalTo(Organism.HUMAN)); - } - - @Test - public void testGetHumanIdAndSpeciesNames() { - Organism organism = Organism.HUMAN; - assertThat(organism.getNcbiId(), equalTo("9606")); - assertThat(organism.getSpeciesName(), equalTo("Homo sapiens")); - } - - @Test - public void testGetMouseIdAndSpeciesNames() { - Organism organism = Organism.MOUSE; - assertThat(organism.getNcbiId(), equalTo("10090")); - assertThat(organism.getSpeciesName(), equalTo("Mus musculus")); - } - - @Test - public void testGetFishIdAndSpeciesNames() { - Organism organism = Organism.FISH; - assertThat(organism.getNcbiId(), equalTo("7955")); - assertThat(organism.getSpeciesName(), equalTo("Danio rerio")); - } - - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/PhenotypeMatchTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/PhenotypeMatchTest.java deleted file mode 100644 index f72ba6908..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/PhenotypeMatchTest.java +++ /dev/null @@ -1,117 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.SerializationFeature; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PhenotypeMatchTest { - - private PhenotypeMatch instance; - - private PhenotypeTerm lcs; - private PhenotypeTerm queryPhenotype; - private PhenotypeTerm matchPhenotype; - private double simJ; - private double score; - - @Before - public void setUp() { - lcs = new PhenotypeTerm("ID:12345", "nose", 1.00); - queryPhenotype = new PhenotypeTerm("ID:12344", "big nose", 2.00); - matchPhenotype = new PhenotypeTerm("ID:12355", "little nose", 2.00); - simJ = 0.8; - score = 1.26; - - instance = new PhenotypeMatch(queryPhenotype, matchPhenotype, simJ, score, lcs); - } - - @Test - public void testGetQueryPhenotypeId() { - assertThat(instance.getQueryPhenotypeId(), equalTo(queryPhenotype.getId())); - } - - @Test - public void testGetQueryPhenotypeIdForNullInstance() { - instance = new PhenotypeMatch(null, matchPhenotype, simJ, score, lcs); - assertThat(instance.getQueryPhenotypeId(), equalTo("null")); - } - - @Test - public void testGetQueryPhenotype() { - assertThat(instance.getQueryPhenotype(), equalTo(queryPhenotype)); - } - - @Test - public void testGetMatchPhenotypeId() { - assertThat(instance.getMatchPhenotypeId(), equalTo(matchPhenotype.getId())); - } - - @Test - public void testGetMatchPhenotypeIdForNullInstance() { - instance = new PhenotypeMatch(queryPhenotype, null, simJ, score, lcs); - assertThat(instance.getMatchPhenotypeId(), equalTo("null")); - } - - @Test - public void testGetMatchPhenotype() { - assertThat(instance.getMatchPhenotype(), equalTo(matchPhenotype)); - } - - @Test - public void testGetLcs() { - assertThat(instance.getLcs(), equalTo(lcs)); - } - - @Test - public void testGetSimJ() { - assertThat(instance.getSimJ(), equalTo(simJ)); - } - - @Test - public void testGetScore() { - assertThat(instance.getScore(), equalTo(score)); - } - - @Test - public void testHashCode() { - assertThat(instance.hashCode(), equalTo(instance.hashCode())); - } - - @Test - public void testEquals() { - assertThat(instance, equalTo(instance)); - } - - @Test - public void testToString() { - assertThat(instance.toString().isEmpty(), is(false)); - } - - @Test - public void testJsonOutput() { - ObjectMapper mapper = new ObjectMapper(); - mapper.configure(SerializationFeature.INDENT_OUTPUT, true); - mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); - try { - String jsonString = mapper.writeValueAsString(instance); - System.out.println(jsonString); - } catch (JsonProcessingException ex) { - System.out.println(ex); - } - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/PhenotypeTermTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/PhenotypeTermTest.java deleted file mode 100644 index 0562e93cf..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/PhenotypeTermTest.java +++ /dev/null @@ -1,79 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import org.hamcrest.CoreMatchers; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.not; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PhenotypeTermTest { - - private PhenotypeTerm instance; - - private String id; - private String term; - private double ic; - - @Before - public void setUp() { - id = "ID:12344"; - term = "big nose"; - ic = 2.00d; - - instance = new PhenotypeTerm(id, term, ic); - } - - @Test - public void testGetId() { - assertThat(instance.getId(), equalTo(id)); - } - - @Test - public void testGetTerm() { - assertThat(instance.getTerm(), equalTo(term)); - } - - @Test - public void testGetIc() { - assertThat(instance.getIc(), equalTo(ic)); - } - - @Test - public void testHashCode() { - assertThat(instance.hashCode(), equalTo(instance.hashCode())); - } - - @Test - public void testEquals() { - assertThat(instance, equalTo(instance)); - } - - @Test - public void testEqualsOther() { - PhenotypeTerm other = new PhenotypeTerm(id, term, ic); - assertThat(instance, equalTo(other)); - } - - @Test - public void testNotEqualsOther() { - PhenotypeTerm other = new PhenotypeTerm("wibble", term, ic); - assertThat(instance, not(equalTo(other))); - } - - @Test - public void testToString() { - assertThat(instance.toString().isEmpty(), is(false)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/RegulatoryFeatureTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/RegulatoryFeatureTest.java deleted file mode 100644 index 92900e6cc..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/RegulatoryFeatureTest.java +++ /dev/null @@ -1,77 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.exomiser.core.model.RegulatoryFeature.FeatureType; -import org.junit.Before; -import org.junit.Test; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.MatcherAssert.assertThat; - -/** - * @author Jules Jacobsen - */ -public class RegulatoryFeatureTest { - - private RegulatoryFeature instance; - - @Before - public void setUp() { - //do we want types or polymorphism? Start with type as this is pretty much just a DTO at the moment? - int chr = 1; - int start = 10; - int end = 100; - FeatureType featureType = FeatureType.ENHANCER; - instance = new RegulatoryFeature(chr, start, end, featureType); - } - - @Test - public void getChromosome() { - assertThat(instance.getChromosome(), equalTo(1)); - } - - @Test - public void getStart() { - assertThat(instance.getStart(), equalTo(10)); - } - - @Test - public void getEnd() { - assertThat(instance.getEnd(), equalTo(100)); - } - - @Test - public void testGetFeatureType() { - assertThat(instance.getFeatureType(), equalTo(FeatureType.ENHANCER)); - } - - @Test - public void testGetVariantEffect() { - assertThat(instance.getVariantEffect(), equalTo(VariantEffect.REGULATORY_REGION_VARIANT)); - } - - @Test - public void testToString() { - System.out.println(instance); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/SampleDataTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/SampleDataTest.java deleted file mode 100644 index a064ca54b..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/SampleDataTest.java +++ /dev/null @@ -1,153 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.jannovar.annotation.Annotation; -import de.charite.compbio.jannovar.pedigree.Pedigree; -import htsjdk.variant.vcf.VCFHeader; - -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.List; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.not; -import static org.hamcrest.CoreMatchers.notNullValue; -import static org.hamcrest.MatcherAssert.assertThat; - -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mock; -import org.mockito.Mockito; -import org.mockito.runners.MockitoJUnitRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(MockitoJUnitRunner.class) -public class SampleDataTest { - - private SampleData instance; - - @Mock - List mockNotEmptyListOfAnnotations; - - @Before - public void setUp() { - instance = new SampleData(); - Mockito.when(mockNotEmptyListOfAnnotations.isEmpty()).thenReturn(Boolean.FALSE); - } - - @Test - public void noArgsConstructorInitialisesGenesVariantEvalations() { - assertThat(instance.getGenes(), notNullValue()); - assertThat(instance.getVariantEvaluations(), notNullValue()); - } - - @Test - public void testCanSetAndGetSampleNames() { - List sampleNames = new ArrayList<>(); - instance.setSampleNames(sampleNames); - assertThat(instance.getSampleNames(), equalTo(sampleNames)); - } - - @Test - public void testCanSetAndGetNumberOfSamples() { - int numSamples = 1; - instance.setNumberOfSamples(numSamples); - assertThat(instance.getNumberOfSamples(), equalTo(numSamples)); - } - - @Test - public void testCanSetAndGetVcfFilePath() { - Path vcfPath = Paths.get("vcf"); - instance.setVcfPath(vcfPath); - assertThat(instance.getVcfPath(), equalTo(vcfPath)); - } - - @Test - public void testCanSetAndGetPedFilePath() { - Path pedPath = Paths.get("ped"); - instance.setPedPath(pedPath); - assertThat(instance.getPedPath(), equalTo(pedPath)); - } - - @Test - public void testCanSetAndGetVcfHeader() { - VCFHeader vcfHeader = new VCFHeader(); - instance.setVcfHeader(vcfHeader); - assertThat(instance.getVcfHeader(), equalTo(vcfHeader)); - } - - @Test - public void testCanSetAndGetVariantEvaluations() { - List variantEvaluations = new ArrayList<>(); - instance.setVariantEvaluations(variantEvaluations); - assertThat(instance.getVariantEvaluations(), equalTo(variantEvaluations)); - } - - @Test - public void testCanSetAndGetPedigree() { - Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Individual"); - instance.setPedigree(pedigree); - assertThat(instance.getPedigree(), equalTo(pedigree)); - } - - @Test - public void testCanSetAndGetGenes() { - List genes = new ArrayList<>(); - instance.setGenes(genes); - assertThat(instance.getGenes(), equalTo(genes)); - } - - @Test - public void testCanReturnUnannotatedVariantEvaluations() { - VariantEvaluation annotatedVariantEvaluation = new VariantEvaluation.VariantBuilder(10, 123353297, "G", "C") - .annotations(mockNotEmptyListOfAnnotations).build(); - - VariantEvaluation unAnnotatedVariantEvaluation = new VariantEvaluation.VariantBuilder(7, 155604800, "C", "CTT").build(); - - List allVariantEvaluations = new ArrayList<>(); - allVariantEvaluations.add(annotatedVariantEvaluation); - allVariantEvaluations.add(unAnnotatedVariantEvaluation); - instance.setVariantEvaluations(allVariantEvaluations); - - List unAnnotatedVariantEvaluations = new ArrayList<>(); - unAnnotatedVariantEvaluations.add(unAnnotatedVariantEvaluation); - - assertThat(instance.getUnAnnotatedVariantEvaluations(), equalTo(unAnnotatedVariantEvaluations)); - } - - @Test - public void testHashCode() { - SampleData other = new SampleData(); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - - @Test - public void testEquals() { - Path vcf = Paths.get("test.vcf"); - instance.setVcfPath(vcf); - - SampleData other = new SampleData(); - other.setVcfPath(vcf); - - assertThat(instance, equalTo(other)); - } - - @Test - public void testNotEquals() { - instance.setVcfPath(Paths.get("test.vcf")); - - SampleData other = new SampleData(); - other.setPedPath(Paths.get("other.ped")); - - assertThat(instance, not(equalTo(other))); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/SimpleVariantCoordinates.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/SimpleVariantCoordinates.java deleted file mode 100644 index 8d2274ed2..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/SimpleVariantCoordinates.java +++ /dev/null @@ -1,105 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model; - -/** - * @author Jules Jacobsen - */ -public class SimpleVariantCoordinates implements VariantCoordinates { - - private final int chr; - private final int pos; - private final String ref; - private final String alt; - - public SimpleVariantCoordinates(int chr, int pos, String ref, String alt) { - this.chr = chr; - this.pos = pos; - this.ref = ref; - this.alt = alt; - } - - @Override - public int getChromosome() { - return chr; - } - - @Override - public String getChromosomeName() { - switch (chr) { - case 23: - return "X"; - case 24: - return "Y"; - case 25: - return "M"; - default: - return String.valueOf(chr); - } - } - - @Override - public int getPosition() { - return pos; - } - - @Override - public String getRef() { - return ref; - } - - @Override - public String getAlt() { - return alt; - } - - @Override - public boolean equals(Object o) { - if (this == o) return true; - if (o == null || getClass() != o.getClass()) return false; - - SimpleVariantCoordinates that = (SimpleVariantCoordinates) o; - - if (chr != that.chr) return false; - if (pos != that.pos) return false; - if (ref != null ? !ref.equals(that.ref) : that.ref != null) return false; - return !(alt != null ? !alt.equals(that.alt) : that.alt != null); - - } - - @Override - public int hashCode() { - int result = chr; - result = 31 * result + pos; - result = 31 * result + (ref != null ? ref.hashCode() : 0); - result = 31 * result + (alt != null ? alt.hashCode() : 0); - return result; - } - - @Override - public String toString() { - return "SimpleVariantCoordinates{" + - "chr=" + chr + - ", pos=" + pos + - ", ref='" + ref + '\'' + - ", alt='" + alt + '\'' + - '}'; - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/TopologicalDomainTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/TopologicalDomainTest.java deleted file mode 100644 index a00bfa36f..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/TopologicalDomainTest.java +++ /dev/null @@ -1,88 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model; - -import org.junit.Test; - -import java.util.HashMap; -import java.util.Map; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.MatcherAssert.assertThat; -import static org.hamcrest.core.Is.is; - -/** - * @author Jules Jacobsen - */ -public class TopologicalDomainTest { - - private TopologicalDomain instance; - - @Test - public void testGetChromosome() { - instance = new TopologicalDomain(1, 0, 0, new HashMap<>()); - assertThat(instance.getChromosome(), equalTo(1)); - } - - @Test - public void testGetStart() { - instance = new TopologicalDomain(0, 1, 0, new HashMap<>()); - assertThat(instance.getStart(), equalTo(1)); - } - - @Test - public void testGetEnd() { - instance = new TopologicalDomain(0, 0, 1, new HashMap<>()); - assertThat(instance.getEnd(), equalTo(1)); - } - - @Test - public void testGetGenes() { - Map genes = new HashMap<>(); - genes.put("GENE1", 12345); - genes.put("GENE2", 23456); - instance = new TopologicalDomain(0, 0, 0, genes); - assertThat(instance.getGenes(), equalTo(genes)); - } - - @Test - public void testVariantIsWithinDomain() { - VariantCoordinates variant = new SimpleVariantCoordinates(1, 5, "A", "T"); - instance = new TopologicalDomain(1, 1, 10, new HashMap<>()); - assertThat(instance.containsPosition(variant), is(true)); - } - - @Test - public void testVariantIsOutsideDomain() { - VariantCoordinates variant = new SimpleVariantCoordinates(1, 5, "A", "T"); - instance = new TopologicalDomain(1, 1000, 10000, new HashMap<>()); - assertThat(instance.containsPosition(variant), is(false)); - } - - @Test - public void testToString() { - Map genes = new HashMap<>(); - genes.put("GENE1", 12345); - genes.put("GENE2", 23456); - instance = new TopologicalDomain(1, 987, 123456, genes); - System.out.println(instance); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/VariantEvaluationTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/VariantEvaluationTest.java deleted file mode 100644 index 2e2712765..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/VariantEvaluationTest.java +++ /dev/null @@ -1,603 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model; - -import de.charite.compbio.exomiser.core.filters.FailFilterResult; -import de.charite.compbio.exomiser.core.filters.FilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.filters.PassFilterResult; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import de.charite.compbio.exomiser.core.model.pathogenicity.*; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.Genotype; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import htsjdk.variant.variantcontext.VariantContext; -import java.util.ArrayList; -import java.util.Collections; - -import java.util.EnumSet; -import java.util.HashSet; -import java.util.List; -import java.util.Set; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.Test; - -/** - * Tests for non-bean (i.e. logic-containing) methods in - * {@code VariantEvaluation} class - * - * @author Jules Jacobsen - */ -public class VariantEvaluationTest { - - private VariantEvaluation instance; - - private static final int CHROMOSOME = 1; - private static final String CHROMOSOME_NAME = "1"; - private static final int POSITION = 1; - private static final String REF = "C"; - private static final String ALT = "T"; - - private static final double QUALITY = 2.2; - private static final int READ_DEPTH = 6; - private static final Genotype HETEROZYGOUS = Genotype.HETEROZYGOUS; - private static final String GENE1_GENE_SYMBOL = "GENE1"; - private static final int GENE1_ENTREZ_GENE_ID = 1234567; - - private static final String GENE2_GENE_SYMBOL = "GENE2"; - private static final int GENE2_ENTREZ_GENE_ID = 7654321; - - private static final FilterResult FAIL_FREQUENCY_RESULT = new FailFilterResult(FilterType.FREQUENCY_FILTER); - private static final FilterResult PASS_FREQUENCY_RESULT = new PassFilterResult(FilterType.FREQUENCY_FILTER); - - private static final FilterResult PASS_QUALITY_RESULT = new PassFilterResult(FilterType.QUALITY_FILTER); - - - private static final float SIFT_PASS_SCORE = SiftScore.SIFT_THRESHOLD - 0.01f; - private static final float SIFT_FAIL_SCORE = SiftScore.SIFT_THRESHOLD + 0.01f; - - private static final SiftScore SIFT_PASS = new SiftScore(SIFT_PASS_SCORE); - private static final SiftScore SIFT_FAIL = new SiftScore(SIFT_FAIL_SCORE); - - private static final float POLYPHEN_PASS_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f; - private static final float POLYPHEN_FAIL_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD - 0.1f; - - private static final PolyPhenScore POLYPHEN_PASS = new PolyPhenScore(POLYPHEN_PASS_SCORE); - private static final PolyPhenScore POLYPHEN_FAIL = new PolyPhenScore(POLYPHEN_FAIL_SCORE); - - private static final float MTASTER_PASS_SCORE = MutationTasterScore.MTASTER_THRESHOLD + 0.01f; - private static final float MTASTER_FAIL_SCORE = MutationTasterScore.MTASTER_THRESHOLD - 0.01f; - - private static final MutationTasterScore MTASTER_PASS = new MutationTasterScore(MTASTER_PASS_SCORE); - private static final MutationTasterScore MTASTER_FAIL = new MutationTasterScore(MTASTER_FAIL_SCORE); - - @Before - public void setUp() { - instance = new VariantEvaluation.VariantBuilder(CHROMOSOME, POSITION, REF, ALT) - .quality(QUALITY) - .geneSymbol(GENE1_GENE_SYMBOL) - .geneId(GENE1_ENTREZ_GENE_ID) - .build(); - } - - private static VariantEvaluation.VariantBuilder testVariantBuilder() { - return new VariantEvaluation.VariantBuilder(CHROMOSOME, POSITION, REF, ALT); - } - - @Test - public void testGetChromosome() { - assertThat(instance.getChromosome(), equalTo(CHROMOSOME)); - } - - @Test - public void testGetChromosomeName() { - assertThat(instance.getChromosomeName(), equalTo(CHROMOSOME_NAME)); - } - - @Test - public void testGetChromosomePosition() { - assertThat(instance.getPosition(), equalTo(POSITION)); - } - - @Test - public void testGetRef() { - assertThat(instance.getRef(), equalTo(REF)); - } - - @Test - public void testGetAlt() { - assertThat(instance.getAlt(), equalTo(ALT)); - - } - - @Test - public void testGetGeneSymbol() { - assertThat(instance.getGeneSymbol(), equalTo(GENE1_GENE_SYMBOL)); - } - - @Test - public void testGetGeneSymbolReturnsOnlyFirstGeneSymbol() { - instance = testVariantBuilder() - .geneSymbol(GENE2_GENE_SYMBOL + "," + GENE1_GENE_SYMBOL) - .build(); - assertThat(instance.getGeneSymbol(), equalTo(GENE2_GENE_SYMBOL)); - } - - @Test - public void testGetGeneSymbolReturnsADotIfGeneSymbolNotDefined() { - instance = testVariantBuilder().build(); - assertThat(instance.getGeneSymbol(), equalTo(".")); - } - - @Test - public void testGetNumIndividuals_EqualsOneIfNotSet() { - assertThat(instance.getNumberOfIndividuals(), equalTo(1)); - } - - @Test - public void testGetNumIndividuals_EqualsBuilderValue() { - int builderValue = 2; - instance = testVariantBuilder().numIndividuals(builderValue).build(); - assertThat(instance.getNumberOfIndividuals(), equalTo(builderValue)); - } - - @Test - public void canGetEntrezGeneID() { - assertThat(instance.getEntrezGeneId(), equalTo(GENE1_ENTREZ_GENE_ID)); - } - - @Test - public void testThatTheConstructorCreatesAnEmptyFrequencyDataObject() { - FrequencyData frequencyData = instance.getFrequencyData(); - assertThat(frequencyData, equalTo(new FrequencyData())); - } - - @Test - public void testThatTheBuilderCanSetAFrequencyDataObject() { - FrequencyData frequencyData = new FrequencyData(new RsId(12345), new Frequency(0.1f, FrequencySource.LOCAL)); - instance = testVariantBuilder().frequencyData(frequencyData).build(); - assertThat(instance.getFrequencyData(), equalTo(frequencyData)); - } - - @Test - public void testCanSetFrequencyDataAfterConstruction() { - FrequencyData frequencyData = new FrequencyData(new RsId(12345), new Frequency(0.1f, FrequencySource.LOCAL)); - instance.setFrequencyData(frequencyData); - assertThat(instance.getFrequencyData(), equalTo(frequencyData)); - } - - @Test - public void testGetFrequencyScoreNoFrequencyDataSet() { - assertThat(instance.getFrequencyScore(), equalTo(1f)); - } - - @Test - public void testThatTheConstructorCreatesAnEmptyPathogenicityDataObject() { - PathogenicityData pathogenicityData = instance.getPathogenicityData(); - assertThat(pathogenicityData, equalTo(new PathogenicityData())); - assertThat(pathogenicityData.getMutationTasterScore(), nullValue()); - assertThat(pathogenicityData.getPolyPhenScore(), nullValue()); - assertThat(pathogenicityData.getSiftScore(), nullValue()); - assertThat(pathogenicityData.getCaddScore(), nullValue()); - assertThat(pathogenicityData.hasPredictedScore(), is(false)); - } - - @Test - public void testThatTheBuilderCanSetAPathogenicityDataObject() { - PathogenicityData pathData = new PathogenicityData(new PolyPhenScore(1.0f)); - instance = testVariantBuilder().pathogenicityData(pathData).build(); - assertThat(instance.getPathogenicityData(), equalTo(pathData)); - } - - @Test - public void testCanSetPathogenicityDataAfterConstruction() { - PathogenicityData pathData = new PathogenicityData(new PolyPhenScore(1.0f)); - instance.setPathogenicityData(pathData); - assertThat(instance.getPathogenicityData(), equalTo(pathData)); - } - - @Test - public void testGetPathogenicityScore_UnknownVariantEffectNoPathogenicityPredictions() { - assertThat(instance.getVariantEffect(), equalTo(VariantEffect.SEQUENCE_VARIANT)); - assertThat(instance.getPathogenicityScore(), equalTo(0f)); - } - - @Test - public void testGetPathogenicityScore_NonMissenseVariantNoPredictions() { - VariantEffect type = VariantEffect.DOWNSTREAM_GENE_VARIANT; - instance = testVariantBuilder().variantEffect(type).build(); - - float expected = VariantTypePathogenicityScores.getPathogenicityScoreOf(type); - assertThat(instance.getPathogenicityScore(), equalTo(expected)); - } - - @Test - public void testGetPathogenicityScore_NonMissenseVariantWithPredictions() { - VariantEffect type = VariantEffect.REGULATORY_REGION_VARIANT; - PathogenicityData pathData = new PathogenicityData(new CaddScore(1f)); - instance = testVariantBuilder().pathogenicityData(pathData).variantEffect(type).build(); - - assertThat(instance.getPathogenicityScore(), equalTo(pathData.getScore())); - } - - @Test - public void testGetPathogenicityScore_MissenseVariantNoPredictions() { - VariantEffect type = VariantEffect.MISSENSE_VARIANT; - instance = testVariantBuilder().variantEffect(type).build(); - - float expected = VariantTypePathogenicityScores.getPathogenicityScoreOf(type); - assertThat(instance.getPathogenicityScore(), equalTo(expected)); - } - - @Test - public void testGetPathogenicityScore_MissenseSiftPass() { - PathogenicityData pathData = new PathogenicityData(POLYPHEN_FAIL, MTASTER_FAIL, SIFT_PASS); - VariantEffect type = VariantEffect.MISSENSE_VARIANT; - instance = testVariantBuilder().pathogenicityData(pathData).variantEffect(type).build(); - - float expected = 1 - SIFT_PASS.getScore(); - assertThat(instance.getPathogenicityScore(), equalTo(expected)); - } - - @Test - public void testGetPathogenicityScore_MissensePolyPhenAndSiftPass() { - PathogenicityData pathData = new PathogenicityData(POLYPHEN_PASS, MTASTER_FAIL, SIFT_PASS); - VariantEffect type = VariantEffect.MISSENSE_VARIANT; - instance = testVariantBuilder().pathogenicityData(pathData).variantEffect(type).build(); - - float expected = 1 - SIFT_PASS.getScore(); - assertThat(instance.getPathogenicityScore(), equalTo(expected)); - } - - @Test - public void testGetPathogenicityScore_MissensePolyPhenSiftAndMutTasterPass() { - PathogenicityData pathData = new PathogenicityData(POLYPHEN_PASS, MTASTER_PASS, SIFT_PASS); - VariantEffect type = VariantEffect.MISSENSE_VARIANT; - instance = testVariantBuilder().pathogenicityData(pathData).variantEffect(type).build(); - - float expected = MTASTER_PASS.getScore(); - assertThat(instance.getPathogenicityScore(), equalTo(expected)); - } - - @Test - public void testGetFailedFilterTypes() { - Set expectedFilters = EnumSet.of(FAIL_FREQUENCY_RESULT.getFilterType()); - - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - assertThat(instance.getFailedFilterTypes(), equalTo(expectedFilters)); - } - - @Test - public void testGetFailedFilterTypesDontContainPassedFilterTypes() { - Set expectedFilters = EnumSet.of(FAIL_FREQUENCY_RESULT.getFilterType()); - - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - instance.addFilterResult(PASS_QUALITY_RESULT); - - assertThat(instance.getFailedFilterTypes(), equalTo(expectedFilters)); - } - - @Test - public void testGetVariantScoreWithEmptyFreqAndPathData() { - instance = testVariantBuilder() - .frequencyData(new FrequencyData()) - .pathogenicityData(new PathogenicityData()) - .build(); - assertThat(instance.getVariantScore(), equalTo(0f)); - } - - @Test - public void testVariantScoreIsIndependentOfFilterStatus() { - instance = testVariantBuilder() - .variantEffect(VariantEffect.MISSENSE_VARIANT) - .frequencyData(new FrequencyData()) - //PolyPhen of 1 is predicted as highly pathogenic - .pathogenicityData(new PathogenicityData(new PolyPhenScore(1f))) - .build(); - assertThat(instance.getVariantScore(), equalTo(1f)); - assertThat(instance.passedFilters(), is(true)); - - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - - assertThat(instance.getVariantScore(), equalTo(1f)); - assertThat(instance.passedFilters(), is(false)); - } - - @Test - public void testPassesFiltersWhenNoFiltersHaveBeenApplied() { - assertThat(instance.getFailedFilterTypes().isEmpty(), is(true)); - assertThat(instance.getFilterResults().isEmpty(), is(true)); - assertThat(instance.passedFilters(), is(true)); - } - - @Test - public void testFailsFiltersWhenFailedFilterResultAdded() { - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - assertThat(instance.passedFilters(), is(false)); - } - - @Test - public void testPassesFiltersWhenOnlyPassedFiltersHaveBeenApplied() { - instance.addFilterResult(PASS_QUALITY_RESULT); - instance.addFilterResult(PASS_FREQUENCY_RESULT); - assertThat(instance.getFailedFilterTypes().isEmpty(), is(true)); - assertThat(instance.getFilterResults().isEmpty(), is(false)); - assertThat(instance.passedFilters(), is(true)); - } - - @Test - public void testFailsFiltersWhenPassedAndFailedFiltersHaveBeenApplied() { - instance.addFilterResult(PASS_QUALITY_RESULT); - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - assertThat(instance.getFailedFilterTypes().isEmpty(), is(false)); - assertThat(instance.getFilterResults().isEmpty(), is(false)); - assertThat(instance.passedFilters(), is(false)); - } - - @Test - public void testFilterStatusWhenNoFiltersHaveBeenApplied() { - assertThat(instance.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); - } - - @Test - public void testFilterStatusWhenFiltersHaveBeenAppliedAndPassed() { - instance.addFilterResult(PASS_QUALITY_RESULT); - assertThat(instance.getFilterStatus(), equalTo(FilterStatus.PASSED)); - } - - @Test - public void testFilterStatusWhenFiltersHaveBeenAppliedAndFailed() { - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - assertThat(instance.getFilterStatus(), equalTo(FilterStatus.FAILED)); - } - - @Test - public void testFilterStatusWhenFiltersHaveBeenAppliedWithPassAndFailedResults() { - instance.addFilterResult(PASS_QUALITY_RESULT); - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - assertThat(instance.getFilterStatus(), equalTo(FilterStatus.FAILED)); - } - - @Test - public void testPassesFilterIsTrueWhenPassedFilterResultAdded() { - FilterType passedFilterType = PASS_QUALITY_RESULT.getFilterType(); - - instance.addFilterResult(PASS_QUALITY_RESULT); - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - - assertThat(instance.passedFilter(passedFilterType), is(true)); - } - - @Test - public void testPassesFilterIsFalseWhenFailedFilterResultAdded() { - FilterType filterType = FAIL_FREQUENCY_RESULT.getFilterType(); - - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - - assertThat(instance.passedFilter(filterType), is(false)); - } - - @Test - public void testGetFilterResultOfFailedFilterIsNull() { - FilterType filterType = FAIL_FREQUENCY_RESULT.getFilterType(); - - instance.addFilterResult(FAIL_FREQUENCY_RESULT); - - assertThat(instance.getFilterResult(filterType), nullValue()); - } - - @Test - public void testGetFilterResultOfPassedFilter() { - FilterType filterType = PASS_FREQUENCY_RESULT.getFilterType(); - - instance.addFilterResult(PASS_FREQUENCY_RESULT); - - assertThat(instance.getFilterResult(filterType), equalTo(PASS_FREQUENCY_RESULT)); - } - - @Test - public void testHasAnnotationsIsFalseByDefault() { - assertThat(instance.hasAnnotations(), is(false)); - } - - @Test - public void testIsXChromosomal_notXchromosomal() { - assertThat(instance.isXChromosomal(), is(false)); - } - - @Test - public void testIsXChromosomal_isXchromosomal() { - int chrX = 23; - instance = new VariantEvaluation.VariantBuilder(chrX, 1, "A", "T").build(); - assertThat(instance.isXChromosomal(), is(true)); - } - - @Test - public void testIsYChromosomal_notYchromosomal() { - assertThat(instance.isYChromosomal(), is(false)); - } - - @Test - public void testIsYChromosomal_isYchromosomal() { - int chrY = 24; - instance = new VariantEvaluation.VariantBuilder(chrY, 1, "A", "T").build(); - assertThat(instance.isYChromosomal(), is(true)); - } - - @Test - public void testIsOffExome_isFalseByDefault() { - assertThat(instance.isOffExome(), is(false)); - } - - @Test - public void testIsOffExome_EqualsBuilderValue() { - instance = testVariantBuilder().isOffExome(true).build(); - assertThat(instance.isOffExome(), is(true)); - } - - @Test - public void testGetChromosomeName_23isX() { - instance = new VariantEvaluation.VariantBuilder(23, 1, "A", "T").build(); - assertThat(instance.getChromosomeName(), equalTo("X")); - } - - @Test - public void testGetChromosomeName_24isY() { - instance = new VariantEvaluation.VariantBuilder(24, 1, "A", "T").build(); - assertThat(instance.getChromosomeName(), equalTo("Y")); - } - - @Test - public void testGetChromosomeName_25isM() { - instance = new VariantEvaluation.VariantBuilder(25, 1, "A", "T").build(); - assertThat(instance.getChromosomeName(), equalTo("M")); - } - - @Test - public void testGetGenotype_Het() { - instance = new VariantEvaluation.VariantBuilder(25, 1, "A", "T").build(); - assertThat(instance.getGenotypeAsString(), equalTo("0/1")); - } - - @Test - public void getVariantContext() { - VariantContext builtContext = instance.getVariantContext(); - assertThat(builtContext.getContig(), equalTo("chr" + CHROMOSOME_NAME)); - assertThat(builtContext.getStart(), equalTo(POSITION)); - assertThat(builtContext.getEnd(), equalTo(POSITION)); - assertThat(builtContext.getNAlleles(), equalTo(2)); - assertThat(builtContext.getReference().getBaseString(), equalTo(instance.getRef())); - assertThat(builtContext.getAlternateAllele(instance.getAltAlleleId()).getBaseString(), equalTo(instance.getAlt())); - assertThat(builtContext.getNSamples(), equalTo(instance.getNumberOfIndividuals())); - } - - @Test - public void getAltAlleleId_EqualsZeroWhenNotSet() { - assertThat(instance.getAltAlleleId(), equalTo(0)); - } - - @Test - public void getAltAlleleId_EqualsBuilderValue() { - int altAlleleId = 2; - instance = testVariantBuilder().altAlleleId(altAlleleId).build(); - assertThat(instance.getAltAlleleId(), equalTo(altAlleleId)); - } - - @Test - public void testGetVariantEffect_defaultValue() { - assertThat(instance.getVariantEffect(), equalTo(VariantEffect.SEQUENCE_VARIANT)); - } - - @Test - public void testIsPredictedPathogenic_falseByDefault() { - assertThat(instance.isPredictedPathogenic(), is(false)); - } - @Test - public void testIsPredictedPathogenic_missenseVariant() { - instance = testVariantBuilder().variantEffect(VariantEffect.MISSENSE_VARIANT).build(); - assertThat(instance.isPredictedPathogenic(), is(true)); - } - - @Test - public void testStopGainVariantIsPredictedPathogenicIsTrue() { - instance = testVariantBuilder().variantEffect(VariantEffect.STOP_GAINED).build(); - assertThat(instance.isPredictedPathogenic(), is(true)); - } - - @Test - public void testDownstreamVariantIsPredictedPathogenicIsFalse() { - instance = testVariantBuilder().variantEffect(VariantEffect.DOWNSTREAM_GENE_VARIANT).build(); - assertThat(instance.isPredictedPathogenic(), is(false)); - } - - @Test - public void testSetAndGetCompatibleInheritanceModes() { - Set compatibleModes = new HashSet<>(); - compatibleModes.add(ModeOfInheritance.AUTOSOMAL_DOMINANT); - compatibleModes.add(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - - instance.setInheritanceModes(compatibleModes); - assertThat(instance.getInheritanceModes(), equalTo(EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT, ModeOfInheritance.AUTOSOMAL_RECESSIVE))); - } - - @Test - public void testIsCompatibleWith() { - instance.setInheritanceModes(EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT, ModeOfInheritance.AUTOSOMAL_RECESSIVE)); - - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); - assertThat(instance.isCompatibleWith(ModeOfInheritance.UNINITIALIZED), is(false)); - } - - @Test - public void testCompareTo() { - //variants are sorted according to chromosome, position ref and alt. - VariantEvaluation zero = new VariantEvaluation.VariantBuilder(1, 1, "A", "C").build(); - VariantEvaluation one = new VariantEvaluation.VariantBuilder(1, 2, "A", "G").build(); - VariantEvaluation two = new VariantEvaluation.VariantBuilder(1, 2, "AC", "G").build(); - VariantEvaluation three = new VariantEvaluation.VariantBuilder(2, 1, "C", "T").build(); - VariantEvaluation four = new VariantEvaluation.VariantBuilder(2, 1, "C", "TT").build(); - - List variants = new ArrayList<>(); - variants.add(zero); - variants.add(one); - variants.add(two); - variants.add(three); - variants.add(four); - Collections.shuffle(variants); - - System.out.println("Shuffled:"); - variants.forEach(variant -> System.out.printf("chr: %2d pos: %2d ref: %-2s alt: %-2s%n", variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt())); - - Collections.sort(variants); - - List expected = new ArrayList<>(); - expected.add(zero); - expected.add(one); - expected.add(two); - expected.add(three); - expected.add(four); - - System.out.println("Sorted:"); - variants.forEach(variant -> System.out.printf("chr: %2d pos: %2d ref: %-2s alt: %-2s%n", variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt())); - assertThat(variants, equalTo(expected)); - } - - @Test - public void testToString() { - String expected = "chr=1 pos=1 ref=C alt=T qual=2.2 SEQUENCE_VARIANT score=0.0 UNFILTERED failedFilters=[] passedFilters=[] compatibleWith=[]"; - System.out.println(instance); - assertThat(instance.toString(), equalTo(expected)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyDataTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyDataTest.java deleted file mode 100644 index dc412ae1e..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyDataTest.java +++ /dev/null @@ -1,234 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.frequency; - -import static de.charite.compbio.exomiser.core.model.frequency.FrequencySource.*; -import java.util.ArrayList; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class FrequencyDataTest { - - private FrequencyData instance; - private FrequencyData rsIdOnlyData; - private FrequencyData noFreqData; - - private static final float FREQ_THRESHOLD = 0.1f; - private static final float PASS_FREQ = FREQ_THRESHOLD - 0.02f; - private static final float FAIL_FREQ = FREQ_THRESHOLD + 1.0f; - - private static final Frequency ESP_ALL_PASS = new Frequency(PASS_FREQ, ESP_ALL); - private static final Frequency ESP_AA_PASS = new Frequency(PASS_FREQ, ESP_AFRICAN_AMERICAN); - private static final Frequency ESP_EA_PASS = new Frequency(PASS_FREQ, ESP_EUROPEAN_AMERICAN); - private static final Frequency DBSNP_PASS = new Frequency(PASS_FREQ, THOUSAND_GENOMES); - - private static final RsId RSID = new RsId(12335); - - @Before - public void setUp() { - instance = new FrequencyData(RSID, DBSNP_PASS, ESP_ALL_PASS, ESP_AA_PASS, ESP_EA_PASS); - rsIdOnlyData = new FrequencyData(RSID); - noFreqData = new FrequencyData(null); - } - - @Test - public void testEmptyData() { - instance = FrequencyData.EMPTY_DATA; - assertThat(instance.getRsId(), nullValue()); - assertThat(instance.getKnownFrequencies().isEmpty(), is(true)); - assertThat(instance.isRepresentedInDatabase(), is(false)); - System.out.println(instance); - } - - @Test - public void testNoArgsConstructorHasNullRsIdAndNoKnownFrequencies() { - instance = new FrequencyData(); - assertThat(instance.getRsId(), nullValue()); - assertThat(instance.getKnownFrequencies().isEmpty(), is(true)); - assertThat(instance.isRepresentedInDatabase(), is(false)); - } - - @Test - public void testGetRsId() { - assertThat(instance.getRsId(), equalTo(RSID)); - } - - @Test - public void testGetDbSnpMaf() { - assertThat(instance.getFrequencyForSource(THOUSAND_GENOMES), equalTo(DBSNP_PASS)); - } - - @Test - public void testGetEspEaMaf() { - assertThat(instance.getFrequencyForSource(ESP_EUROPEAN_AMERICAN), equalTo(ESP_EA_PASS)); - } - - @Test - public void testGetEspAaMaf() { - assertThat(instance.getFrequencyForSource(ESP_AFRICAN_AMERICAN), equalTo(ESP_AA_PASS)); - } - - @Test - public void testGetEspAllMaf() { - assertThat(instance.getFrequencyForSource(ESP_ALL), equalTo(ESP_ALL_PASS)); - } - - @Test - public void testNotRepresentedInDatabase() { - assertThat(noFreqData.isRepresentedInDatabase(), is(false)); - } - - @Test - public void testRepresentedInDatabaseEspAllOnly() { - instance = new FrequencyData(RSID, ESP_ALL_PASS); - assertThat(instance.isRepresentedInDatabase(), is(true)); - } - - @Test - public void testHasDbSnpData() { - assertThat(instance.hasDbSnpData(), is(true)); - } - - @Test - public void testRepresentedInDatabaseRsIdOnly() { - assertThat(rsIdOnlyData.isRepresentedInDatabase(), is(true)); - } - - @Test - public void testHasDbSnpRsIdTrue() { - assertThat(rsIdOnlyData.hasDbSnpRsID(), is(true)); - } - - @Test - public void testHasDbSnpRsIdFalse() { - assertThat(noFreqData.hasDbSnpRsID(), is(false)); - } - - @Test - public void testHasEspDataTrue() { - instance = new FrequencyData(RSID, ESP_ALL_PASS); - assertThat(instance.hasEspData(), is(true)); - } - - @Test - public void testHasExacDataTrue() { - instance = new FrequencyData(RSID, new Frequency(PASS_FREQ, EXAC_AFRICAN_INC_AFRICAN_AMERICAN)); - assertThat(instance.hasExacData(), is(true)); - } - - @Test - public void testHasExacDataFalse() { - instance = new FrequencyData(RSID, ESP_ALL_PASS); - assertThat(instance.hasExacData(), is(false)); - } - - @Test - public void testHasEspDataFalse() { - instance = noFreqData; - assertThat(instance.hasEspData(), is(false)); - } - - @Test - public void testGetKnownFrequencies_noFrequencyData() { - instance = new FrequencyData(); - - List result = instance.getKnownFrequencies(); - - assertThat(result, equalTo(new ArrayList<>())); - } - - @Test - public void testGetKnownFrequencies() { - instance = new FrequencyData(RSID, ESP_ALL_PASS, DBSNP_PASS, ESP_AA_PASS, ESP_EA_PASS); - List expResult = new ArrayList<>(); - expResult.add(DBSNP_PASS); - expResult.add(ESP_AA_PASS); - expResult.add(ESP_EA_PASS); - expResult.add(ESP_ALL_PASS); - - List result = instance.getKnownFrequencies(); - - assertThat(result, equalTo(expResult)); - } - - @Test - public void testGetKnownFrequencies_isImmutable() { - instance = new FrequencyData(RSID, ESP_ALL_PASS, DBSNP_PASS, ESP_AA_PASS); - List expResult = new ArrayList<>(); - expResult.add(DBSNP_PASS); - expResult.add(ESP_AA_PASS); - expResult.add(ESP_ALL_PASS); - - //try and add another score to the instance post-construction - instance.getKnownFrequencies().add(ESP_EA_PASS); - - assertThat(instance.getKnownFrequencies(), equalTo(expResult)); - } - - @Test - public void testGetMaxFreqWhenNoData() { - float maxFreq = 0.0f; - assertThat(noFreqData.getMaxFreq(), equalTo(maxFreq)); - } - - @Test - public void testGetMaxFreqWithData() { - float maxFreq = 89.5f; - Frequency maxFrequency = new Frequency(maxFreq); - instance = new FrequencyData(RSID, DBSNP_PASS, maxFrequency, ESP_AA_PASS, ESP_EA_PASS); - assertThat(instance.getMaxFreq(), equalTo(maxFreq)); - } - - @Test - public void testGetScore_reallyRareVariant() { - assertThat(noFreqData.getScore(), equalTo(1f)); - } - - @Test - public void testGetScore_commonVariant() { - float maxFreq = 100.0f; - Frequency maxFrequency = new Frequency(maxFreq, FrequencySource.THOUSAND_GENOMES); - instance = new FrequencyData(RSID, maxFrequency); - assertThat(instance.getScore(), equalTo(0f)); - } - - @Test - public void testGetScore_rareVariant() { - float maxFreq = 0.1f; - Frequency maxFrequency = new Frequency(maxFreq); - instance = new FrequencyData(null, maxFrequency); - assertThat(instance.getScore(), equalTo(0.8504372f)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyIT.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyIT.java deleted file mode 100644 index 1cc4c5399..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyIT.java +++ /dev/null @@ -1,174 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.frequency; - -import java.util.ArrayList; -import java.util.List; -import java.util.logging.Level; -import java.util.logging.Logger; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class FrequencyIT { - - private static final int VARIANTS_IN_GENOME = 4000000; - private static final int VARIANTS_IN_EXOME = 40000; - - public static void main(String[] args) { - -// sleep(20); - - List exomeMafList = createObjects(VARIANTS_IN_EXOME); - compareThresholdForObjects(exomeMafList, 23.0f); - - createPrimitives(VARIANTS_IN_EXOME); - List exomeFloats = createAutoBoxedPrimitives(VARIANTS_IN_EXOME); - compareThresholdForAutoBoxedPrimitives(exomeFloats, 23.0f); - - sleep(2); - - List genomeMafList = createObjects(VARIANTS_IN_GENOME); - compareThresholdForObjects(genomeMafList, 23.0f); - - createPrimitives(VARIANTS_IN_GENOME); - List genomeFloats = createAutoBoxedPrimitives(VARIANTS_IN_GENOME); - compareThresholdForAutoBoxedPrimitives(genomeFloats, 23.0f); - } - - private static void sleep(int secs) { - System.out.printf("Sleeping for %d secs%n", secs); - try { - Thread.sleep(secs * 1000); - } catch (InterruptedException ex) { - Logger.getLogger(FrequencyIT.class.getName()).log(Level.SEVERE, null, ex); - } - } - - private static List createObjects(int numObjects) { - long start = System.currentTimeMillis(); - int i = 0; - List mafList = new ArrayList<>(); - while (i < numObjects) { - i++; - Frequency maf1 = new Frequency(getRandomPercentage()); - mafList.add(maf1); - Frequency maf2 = new Frequency(getRandomPercentage()); - mafList.add(maf2); - Frequency maf3 = new Frequency(getRandomPercentage()); - mafList.add(maf3); - Frequency maf4 = new Frequency(getRandomPercentage()); - mafList.add(maf4); - } - long end = System.currentTimeMillis(); - - System.out.println(String.format("Took %dms to create %s %s objects", end - start, (long) i * 4, Frequency.class.getName())); - return mafList; - } - - private static void compareThresholdForObjects(List mafList, float threshold) { - - long start = System.currentTimeMillis(); - - long mafOverThrehold = 0; - for (Frequency minorAlleleFrequency : mafList) { - if (minorAlleleFrequency.getFrequency() > threshold) { - mafOverThrehold++; - } - } - long end = System.currentTimeMillis(); - - System.out.println(String.format("Took %dms to compare %s %s objects - %s were over threshold of %s", end - start, mafList.size(), Frequency.class.getName(), mafOverThrehold, threshold)); - } - - private static void createPrimitives(int numObjects) { - long start = System.currentTimeMillis(); - int i = 0; - while (i < numObjects) { - i++; - float maf1 = getRandomPercentage(); - float maf2 = getRandomPercentage(); - float maf3 = getRandomPercentage(); - float maf4 = getRandomPercentage(); - } - long end = System.currentTimeMillis(); - - System.out.println(String.format("Took %dms to create %s primitives", end - start, (long) i * 4)); - } - - private static List createAutoBoxedPrimitives(int numObjects) { - long start = System.currentTimeMillis(); - int i = 0; - List floatList = new ArrayList<>(); - while (i < numObjects) { - i++; - floatList.add(getRandomPercentage()); - floatList.add(getRandomPercentage()); - floatList.add(getRandomPercentage()); - floatList.add(getRandomPercentage()); - } - long end = System.currentTimeMillis(); - - System.out.println(String.format("Took %dms to create %s %s objects", end - start, (long) i * 4, Float.class.getName())); - return floatList; - } - - - private static void compareThresholdForAutoBoxedPrimitives(List floatList, float threshold) { - - long start = System.currentTimeMillis(); - - long overThrehold = 0; - for (Float value : floatList) { - if (value > threshold) { - overThrehold++; - } - } - long end = System.currentTimeMillis(); - - System.out.println(String.format("Took %dms to compare %s %s objects - %s were over threshold of %s", end - start, floatList.size(), Float.class.getName(), overThrehold, threshold)); - } - - private static float getRandomPercentage() { - return (float) Math.random() * 100; - } - - public FrequencyIT() { - } - - @Before - public void setUp() { - } - - /** - * Attach the performance monitor to this method... - */ - @Test - public void testConstructorPerformanceGenome() { - int i = 0; - while (i < VARIANTS_IN_GENOME) { - i++; - Frequency maf = new Frequency(20f); - } - System.out.println(i); - - } - - /** - * Attach the performance monitor to this method... - */ - @Test - public void testOverThresholdPerformanceGenome() { - float threshold = 24.56f; - - for (int i = 0; i < VARIANTS_IN_GENOME; i++) { - Frequency maf = new Frequency(20f); - } - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencySourceTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencySourceTest.java deleted file mode 100644 index 36fc828bd..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencySourceTest.java +++ /dev/null @@ -1,63 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.frequency; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.assertThat; -import static de.charite.compbio.exomiser.core.model.frequency.FrequencySource.*; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class FrequencySourceTest { - - @Test - public void testValues() { - FrequencySource[] values = { - UNKNOWN, - LOCAL, - THOUSAND_GENOMES, - ESP_AFRICAN_AMERICAN, - ESP_EUROPEAN_AMERICAN, - ESP_ALL, - EXAC_AFRICAN_INC_AFRICAN_AMERICAN, - EXAC_AMERICAN, - EXAC_EAST_ASIAN, - EXAC_SOUTH_ASIAN, - EXAC_FINNISH, - EXAC_NON_FINNISH_EUROPEAN, - EXAC_OTHER}; - - assertThat(FrequencySource.values(), equalTo(values)); - } - - @Test - public void testValueOf() { - assertThat(FrequencySource.valueOf("THOUSAND_GENOMES"), equalTo(THOUSAND_GENOMES)); - } - - @Test - public void testGetSource() { - assertThat(LOCAL.getSource(), equalTo("Local")); - } - - @Test - public void testGetAllExternalFrequencySources(){ - assertThat(ALL_EXTERNAL_FREQ_SOURCES.size(), equalTo(11)); - } - - @Test - public void testGetAllEspFrequencySources(){ - assertThat(ALL_ESP_SOURCES.size(), equalTo(3)); - } - - @Test - public void testGetAllExacFrequencySources(){ - assertThat(ALL_EXAC_SOURCES.size(), equalTo(7)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyTest.java deleted file mode 100644 index f1574b02c..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/FrequencyTest.java +++ /dev/null @@ -1,94 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.frequency; - -import static de.charite.compbio.exomiser.core.model.frequency.FrequencySource.*; -import java.util.Locale; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.not; -import static org.junit.Assert.assertThat; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class FrequencyTest { - - private Frequency instance; - - @Test - public void testfrequencyOnlyConstructor(){ - float frequency = 1.0f; - instance = new Frequency(frequency); - assertThat(instance.getFrequency(), equalTo(frequency)); - assertThat(instance.getSource(), equalTo(FrequencySource.UNKNOWN)); - System.out.println(instance); - } - - @Test - public void testfrequencySourceInConstructor(){ - float frequency = 1.0f; - FrequencySource source = EXAC_NON_FINNISH_EUROPEAN; - - instance = new Frequency(frequency, source); - assertThat(instance.getFrequency(), equalTo(frequency)); - assertThat(instance.getSource(), equalTo(source)); - System.out.println(instance); - } - - @Test - public void testFrequencyIsOverThreshold() { - float threshold = 2.0f; - instance = new Frequency(4.0f, ESP_AFRICAN_AMERICAN); - - assertThat(instance.isOverThreshold(threshold), is(true)); - } - - @Test - public void testFrequencyIsNotOverThreshold() { - float threshold = 2.0f; - instance = new Frequency(1.0f, ESP_AFRICAN_AMERICAN); - - assertThat(instance.isOverThreshold(threshold), is(false)); - } - - @Test - public void testNotEqualToOtherFrequencyOfDifferentSource() { - Frequency other = new Frequency(1.0f, UNKNOWN); - instance = new Frequency(1.0f, ESP_AFRICAN_AMERICAN); - assertThat(instance, not(equalTo(other))); - } - - @Test - public void testEqualToOtherFrequencyOfSameSourceAndFrequecy() { - Frequency other = new Frequency(1.0f, UNKNOWN); - instance = new Frequency(1.0f, UNKNOWN); - assertThat(instance, equalTo(other)); - } - - @Test - public void testHashCodeEqual() { - Frequency other = new Frequency(1.0f, UNKNOWN); - instance = new Frequency(1.0f, UNKNOWN); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - - @Test - public void testHashCodeNotEqual() { - Frequency other = new Frequency(1.0f, UNKNOWN); - instance = new Frequency(1.1f, UNKNOWN); - assertThat(instance.hashCode(), not(equalTo(other.hashCode()))); - } - - @Test - public void testToString() { - float frequency = 1.0f; - instance = new Frequency(frequency, UNKNOWN); - assertThat(instance.toString(), equalTo(String.format(Locale.UK, "Frequency{%s source=UNKNOWN}", frequency))); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/RsIdTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/RsIdTest.java deleted file mode 100644 index cb897bc3c..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/frequency/RsIdTest.java +++ /dev/null @@ -1,71 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.frequency; - -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class RsIdTest { - - RsId instance; - - private static final int ID = 234567364; - - public RsIdTest() { - } - - @Before - public void setUp() { - instance = new RsId(ID); - } - - @Test - public void testGetId() { - assertThat(instance.getId(), equalTo(ID)); - } - - @Test - public void testHashCode() { - System.out.println("hashCode"); - RsId other = new RsId(ID); - int expected = other.hashCode(); - assertThat(instance.hashCode(), equalTo(expected)); - - } - - @Test - public void testEqualsNotNull() { - Object obj = null; - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testEqualsNotSomethingElse() { - Object obj = "1335464574"; - assertThat(instance.equals(obj), is(false)); - } - - @Test - public void testEquals() { - RsId obj = new RsId(ID); - assertThat(instance.equals(obj), is(true)); - } - - @Test - public void testToString() { - assertThat(instance.toString(), equalTo("rs" + ID)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/CaddScoreTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/CaddScoreTest.java deleted file mode 100644 index 844e12f92..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/CaddScoreTest.java +++ /dev/null @@ -1,36 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class CaddScoreTest { - - private CaddScore instance; - float score = 1.0f; - - @Before - public void setUp() { - instance = new CaddScore(score); - } - - @Test - public void testGetSource() { - assertThat(instance.getSource(), equalTo(PathogenicitySource.CADD)); - } - - @Test - public void testToString() { - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/MutationTasterScoreTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/MutationTasterScoreTest.java deleted file mode 100644 index 4344ca883..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/MutationTasterScoreTest.java +++ /dev/null @@ -1,32 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class MutationTasterScoreTest { - - private MutationTasterScore instance; - private float score = 1.0f; - - @Before - public void setUp() { - instance = new MutationTasterScore(score); - } - - @Test - public void testGetSource() { - assertThat(instance.getSource(), equalTo(PathogenicitySource.MUTATION_TASTER)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityDataTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityDataTest.java deleted file mode 100644 index 106649c55..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityDataTest.java +++ /dev/null @@ -1,271 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import java.util.ArrayList; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.not; -import static org.hamcrest.CoreMatchers.nullValue; - -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PathogenicityDataTest { - - private PathogenicityData instance; - - private static final float SIFT_PASS_SCORE = SiftScore.SIFT_THRESHOLD - 0.01f; - private static final float SIFT_FAIL_SCORE = SiftScore.SIFT_THRESHOLD + 0.01f; - - private static final SiftScore SIFT_PASS = new SiftScore(SIFT_PASS_SCORE); - private static final SiftScore SIFT_FAIL = new SiftScore(SIFT_FAIL_SCORE); - - private static final float POLYPHEN_PASS_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f; - private static final float POLYPHEN_FAIL_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD - 0.1f; - - private static final PolyPhenScore POLYPHEN_PASS = new PolyPhenScore(POLYPHEN_PASS_SCORE); - private static final PolyPhenScore POLYPHEN_FAIL = new PolyPhenScore(POLYPHEN_FAIL_SCORE); - - private static final float MTASTER_PASS_SCORE = MutationTasterScore.MTASTER_THRESHOLD + 0.01f; - private static final float MTASTER_FAIL_SCORE = MutationTasterScore.MTASTER_THRESHOLD - 0.01f; - - private static final MutationTasterScore MTASTER_PASS = new MutationTasterScore(MTASTER_PASS_SCORE); - private static final MutationTasterScore MTASTER_FAIL = new MutationTasterScore(MTASTER_FAIL_SCORE); - - - @Before - public void setUp() { - instance = new PathogenicityData(); - } - - @Test - public void testEmptyData() { - instance = PathogenicityData.EMPTY_DATA; - assertThat(instance.hasPredictedScore(), is(false)); - assertThat(instance.getPredictedPathogenicityScores().isEmpty(), is(true)); - assertThat(instance.getMostPathogenicScore(), nullValue()); - assertThat(instance.getScore(), equalTo(0f)); - System.out.println(instance); - } - - @Test - public void testHasPredictedScore_returnsFalseWhenNullsUsedInConstructor() { - instance = new PathogenicityData(null, null); - assertThat(instance.hasPredictedScore(), is(false)); - } - - @Test - public void testGetPredictedPathogenicityScores_isEmptyWhenNullsUsedInConstructor() { - instance = new PathogenicityData(null, null); - assertThat(instance.getPredictedPathogenicityScores().isEmpty(), is(true)); - } - - @Test - public void testPathogenicityData_RemovesNullsUsedInConstructor() { - instance = new PathogenicityData(POLYPHEN_FAIL, null); - assertThat(instance.getPredictedPathogenicityScores().isEmpty(), is(false)); - assertThat(instance.getPredictedPathogenicityScores().size(), equalTo(1)); - } - - @Test - public void testGetMostPathogenicScore_ReturnsNullWhenNoScorePresent() { - PathogenicityScore mostPathogenicScore = instance.getMostPathogenicScore(); - assertThat(mostPathogenicScore, nullValue()); - } - - @Test - public void testGetMostPathogenicScore_ReturnsOnlyScoreWhenOneScorePresent() { - instance = new PathogenicityData(POLYPHEN_FAIL); - PathogenicityScore mostPathogenicScore = instance.getMostPathogenicScore(); - assertThat(mostPathogenicScore, equalTo(POLYPHEN_FAIL)); - } - - @Test - public void testGetMostPathogenicScore_ReturnsMostPathogenicScore() { - instance = new PathogenicityData(POLYPHEN_FAIL, SIFT_PASS); - PathogenicityScore mostPathogenicScore = instance.getMostPathogenicScore(); - assertThat(mostPathogenicScore, equalTo(SIFT_PASS)); - } - - @Test - public void testGetPolyPhenScore() { - instance = new PathogenicityData(POLYPHEN_FAIL); - PolyPhenScore result = instance.getPolyPhenScore(); - assertThat(result, equalTo(POLYPHEN_FAIL)); - } - - @Test - public void testGetMutationTasterScore() { - instance = new PathogenicityData(MTASTER_PASS); - MutationTasterScore result = instance.getMutationTasterScore(); - assertThat(result, equalTo(MTASTER_PASS)); - } - - @Test - public void testGetSiftScore() { - instance = new PathogenicityData(SIFT_FAIL); - SiftScore result = instance.getSiftScore(); - assertThat(result, equalTo(SIFT_FAIL)); - } - - @Test - public void testGetRemmScore() { - instance = new PathogenicityData(new RemmScore(1f)); - RemmScore result = instance.getRemmScore(); - assertThat(result, equalTo(new RemmScore(1f))); - } - - @Test - public void testGetSiftScore_ReturnsNullWhenNoSiftScorePresent() { - instance = new PathogenicityData(); - SiftScore result = instance.getSiftScore(); - assertThat(result, nullValue()); - } - - @Test - public void testGetCaddScore() { - CaddScore caddScore = new CaddScore(POLYPHEN_PASS_SCORE); - instance = new PathogenicityData(caddScore); - CaddScore result = instance.getCaddScore(); - assertThat(result, equalTo(caddScore)); - } - - @Test - public void testGetPredictedPathogenicityScores() { - instance = new PathogenicityData(POLYPHEN_PASS, MTASTER_PASS, SIFT_FAIL); - List expResult = new ArrayList<>(); - expResult.add(POLYPHEN_PASS); - expResult.add(MTASTER_PASS); - expResult.add(SIFT_FAIL); - - List result = instance.getPredictedPathogenicityScores(); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testGetPredictedPathogenicityScores_isImmutable() { - instance = new PathogenicityData(POLYPHEN_PASS, MTASTER_PASS, SIFT_FAIL); - List expResult = new ArrayList<>(); - expResult.add(POLYPHEN_PASS); - expResult.add(MTASTER_PASS); - expResult.add(SIFT_FAIL); - //try and add another score to the instance post-construction - instance.getPredictedPathogenicityScores().add(SIFT_PASS); - - List result = instance.getPredictedPathogenicityScores(); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testHasPredictedScore() { - instance = new PathogenicityData(POLYPHEN_PASS, MTASTER_PASS, SIFT_FAIL); - boolean result = instance.hasPredictedScore(); - assertThat(result, is(true)); - } - - @Test - public void testHasPredictedScoreForSource_isTrue() { - instance = new PathogenicityData(POLYPHEN_PASS); - boolean result = instance.hasPredictedScore(PathogenicitySource.POLYPHEN); - assertThat(result, is(true)); - } - - @Test - public void testHasPredictedScoreForSource_isFalse() { - boolean result = instance.hasPredictedScore(PathogenicitySource.POLYPHEN); - assertThat(result, is(false)); - } - - @Test - public void testGetPredictedScore_scorePresent() { - instance = new PathogenicityData(POLYPHEN_PASS); - PathogenicityScore result = instance.getPredictedScore(PathogenicitySource.POLYPHEN); - assertThat(result.getScore(), equalTo(POLYPHEN_PASS.getScore())); - assertThat(result.getSource(), equalTo(POLYPHEN_PASS.getSource())); - assertThat((PolyPhenScore) result, equalTo(POLYPHEN_PASS)); - } - - @Test - public void testGetPredictedScore_scoreMissingReturnsNull() { - PathogenicityScore result = instance.getPredictedScore(PathogenicitySource.POLYPHEN); - assertThat(result, is(nullValue())); - } - - @Test - public void testHasNoPredictedScore() { - boolean result = instance.hasPredictedScore(); - assertThat(result, is(false)); - } - - @Test - public void testHashCodeEquals() { - PathogenicityData otherInstance = new PathogenicityData(); - assertThat(instance.hashCode(), equalTo(otherInstance.hashCode())); - } - - @Test - public void testHashCodeNotEquals() { - PathogenicityData otherInstance = new PathogenicityData(MTASTER_FAIL); - assertThat(instance.hashCode(), not(otherInstance.hashCode())); - } - - @Test - public void testNotEquals() { - PathogenicityData otherInstance = new PathogenicityData(MTASTER_FAIL); - assertThat(instance.equals(otherInstance), is(false)); - } - - @Test - public void testGetScore_NoPredictedData() { - assertThat(instance.getScore(), equalTo(0f)); - } - - @Test - public void testGetScore_NonSiftPredictedData() { - instance = new PathogenicityData(MTASTER_PASS, POLYPHEN_FAIL); - assertThat(instance.getScore(), equalTo(MTASTER_PASS_SCORE)); - } - - @Test - public void testGetScore_ReturnsNormalisedSiftScore() { - instance = new PathogenicityData(MTASTER_FAIL, SIFT_PASS); - assertThat(instance.getScore(), equalTo(1 - SIFT_PASS_SCORE)); - } - - @Test - public void testEquals() { - instance = new PathogenicityData(MTASTER_FAIL); - PathogenicityData otherInstance = new PathogenicityData(MTASTER_FAIL); - assertThat(instance.equals(otherInstance), is(true)); - } - - @Test - public void testToString() { - instance = new PathogenicityData(MTASTER_FAIL, POLYPHEN_PASS, SIFT_PASS); - System.out.println(instance); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityScoreTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityScoreTest.java deleted file mode 100644 index 113d088ca..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PathogenicityScoreTest.java +++ /dev/null @@ -1,123 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import de.charite.compbio.exomiser.core.model.pathogenicity.SiftScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.MutationTasterScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import java.util.ArrayList; -import java.util.Collections; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author jj8 - */ -public class PathogenicityScoreTest { - - public PathogenicityScoreTest() { - } - - @Before - public void setUp() { - } - - - @Test - public void testComparableOnlySiftScores() { - SiftScore mostPathogenic = new SiftScore(0.001f); - SiftScore belowThreshold = new SiftScore(SiftScore.SIFT_THRESHOLD + 0.01f); - SiftScore aboveThreshold = new SiftScore(SiftScore.SIFT_THRESHOLD - 0.01f); - SiftScore leastPathogenic = new SiftScore(0.999f); - - - List scores = new ArrayList<>(); - scores.add(leastPathogenic); - scores.add(mostPathogenic); - scores.add(belowThreshold); - scores.add(aboveThreshold); - - List expected = new ArrayList<>(); - expected.add(mostPathogenic); - expected.add(aboveThreshold); - expected.add(belowThreshold); - expected.add(leastPathogenic); - - Collections.sort(scores); - - assertThat(scores, equalTo(expected)); - - } - - @Test - public void testComparableWithSiftScores() { - SiftScore mostPathogenic = new SiftScore(0.001f); - SiftScore leastPathogenic = new SiftScore(0.998f); - PolyPhenScore overThreshold = new PolyPhenScore(PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f); - PolyPhenScore belowThreshold = new PolyPhenScore(PolyPhenScore.POLYPHEN_THRESHOLD - 0.01f); - MutationTasterScore damaging = new MutationTasterScore(MutationTasterScore.MTASTER_THRESHOLD + 0.001f); - MutationTasterScore notdamaging = new MutationTasterScore(MutationTasterScore.MTASTER_THRESHOLD - 0.001f); - - List scores = new ArrayList<>(); - scores.add(damaging); - scores.add(leastPathogenic); - scores.add(mostPathogenic); - scores.add(notdamaging); - scores.add(belowThreshold); - scores.add(overThreshold); - - Collections.sort(scores); - - List expected = new ArrayList<>(); - expected.add(mostPathogenic); - expected.add(damaging); - expected.add(notdamaging); - expected.add(overThreshold); - expected.add(belowThreshold); - expected.add(leastPathogenic); - - assertThat(scores, equalTo(expected)); - - } - - @Test - public void testComparableNoSiftScores() { - - PolyPhenScore overThreshold = new PolyPhenScore(PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f); - PolyPhenScore belowThreshold = new PolyPhenScore(PolyPhenScore.POLYPHEN_THRESHOLD - 0.01f); - MutationTasterScore damaging = new MutationTasterScore(MutationTasterScore.MTASTER_THRESHOLD + 0.001f); - - List scores = new ArrayList<>(); - scores.add(damaging); - scores.add(belowThreshold); - scores.add(overThreshold); - - List expected = new ArrayList<>(); - expected.add(damaging); - expected.add(overThreshold); - expected.add(belowThreshold); - - Collections.sort(scores); - - assertThat(scores, equalTo(expected)); - - } - - @Test(expected = NullPointerException.class) - public void comparingAPathogenicityScoreToANullThrowsANullPOinterException() { - PolyPhenScore polyPhenScore = new PolyPhenScore(1); - PolyPhenScore nullScore = null; - - polyPhenScore.compareTo(nullScore); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PolyPhenScoreTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PolyPhenScoreTest.java deleted file mode 100644 index 7e3ae5816..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/PolyPhenScoreTest.java +++ /dev/null @@ -1,50 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class PolyPhenScoreTest { - - private PolyPhenScore instance; - private final float pathogenicScore = 1f; - private final float nonPathogenicScore = 0f; - - @Before - public void setUp() { - instance = new PolyPhenScore(pathogenicScore); - } - - @Test - public void testGetSource() { - assertThat(instance.getSource(), equalTo(PathogenicitySource.POLYPHEN)); - } - - @Test - public void testCompareTo_Before() { - PolyPhenScore nonPathogenicPolyphen = new PolyPhenScore(nonPathogenicScore); - assertThat(instance.compareTo(nonPathogenicPolyphen), equalTo(-1)); - } - - @Test - public void testCompareTo_After() { - PolyPhenScore nonPathogenicPolyphen = new PolyPhenScore(nonPathogenicScore); - assertThat(nonPathogenicPolyphen.compareTo(instance), equalTo(1)); - } - - @Test - public void testCompareTo_Equals() { - PolyPhenScore sameScore = new PolyPhenScore(pathogenicScore); - assertThat(instance.compareTo(sameScore), equalTo(0)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/RemmScoreTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/RemmScoreTest.java deleted file mode 100644 index e3b202fc0..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/RemmScoreTest.java +++ /dev/null @@ -1,45 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import static org.hamcrest.CoreMatchers.equalTo; - -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class RemmScoreTest { - - RemmScore instance = new RemmScore(1f); - - @Test - public void testGetSource() { - assertThat(instance.getSource(), equalTo(PathogenicitySource.REMM)); - } - - @Test - public void testToString() { - assertThat(instance.toString(), equalTo("REMM: 1.000")); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/SiftScoreTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/SiftScoreTest.java deleted file mode 100644 index e394c1449..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/SiftScoreTest.java +++ /dev/null @@ -1,125 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.*; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class SiftScoreTest { - - private SiftScore instance; - - //Higher scores are more pathogenic so this is the reverse of what's normal - //a negative integer, zero, or a positive integer as this object is less than, equal to, or greater than the specified object - private static final int MORE_PATHOGENIC = BasePathogenicityScore.MORE_PATHOGENIC; - private static final int EQUALS = BasePathogenicityScore.EQUALS; - private static final int LESS_PATHOGENIC = BasePathogenicityScore.LESS_PATHOGENIC; - - private static final float SIFT_PATHOGENIC_SCORE = SiftScore.SIFT_THRESHOLD - 0.01f; - private static final float SIFT_NON_PATHOGENIC_SCORE = SiftScore.SIFT_THRESHOLD + 0.01f; - - @Test - public void testGetSource() { - instance = new SiftScore(SIFT_PATHOGENIC_SCORE); - assertThat(instance.getSource(), equalTo(PathogenicitySource.SIFT)); - } - - @Test - public void testToStringTolerated() { - instance = new SiftScore(0.1f); - assertThat(instance.toString(), equalTo("SIFT: 0.100 (T)")); - } - - @Test - public void testToStringDamaging() { - instance = new SiftScore(SIFT_PATHOGENIC_SCORE); - assertThat(instance.toString(), equalTo(String.format("SIFT: %.3f (D)", SIFT_PATHOGENIC_SCORE))); - } - - @Test - public void testNotEqualToAnotherSiftScore() { - SiftScore pathogenic = new SiftScore(SIFT_PATHOGENIC_SCORE); - SiftScore nonPathogenic = new SiftScore(SIFT_NON_PATHOGENIC_SCORE); - assertThat(nonPathogenic.equals(pathogenic), is(false)); - } - - @Test - public void testEqualToAnotherSiftScore() { - SiftScore sift = new SiftScore(SIFT_PATHOGENIC_SCORE); - SiftScore anotherPathogenic = new SiftScore(SIFT_PATHOGENIC_SCORE); - assertThat(anotherPathogenic.equals(sift), is(true)); - } - - @Test - public void testNotEqualToAnotherPathogenicityScoreWithSameScore() { - SiftScore sift = new SiftScore(SIFT_PATHOGENIC_SCORE); - PathogenicityScore poly = new PolyPhenScore(SIFT_PATHOGENIC_SCORE); - assertThat(sift.equals(poly), is(false)); - } - - @Test - public void testCompareToAfterAgainstAnotherSiftScore() { - SiftScore pathogenic = new SiftScore(SIFT_PATHOGENIC_SCORE); - SiftScore nonPathogenic = new SiftScore(SIFT_NON_PATHOGENIC_SCORE); - assertThat(pathogenic.compareTo(nonPathogenic), equalTo(MORE_PATHOGENIC)); - } - - @Test - public void testCompareToBeforeAgainstAnotherSiftScore() { - SiftScore pathogenic = new SiftScore(SIFT_PATHOGENIC_SCORE); - SiftScore nonPathogenic = new SiftScore(SIFT_NON_PATHOGENIC_SCORE); - assertThat(nonPathogenic.compareTo(pathogenic), equalTo(LESS_PATHOGENIC)); - } - - @Test - public void testCompareToEqualsAgainstAnotherSiftScore() { - SiftScore sift = new SiftScore(SIFT_PATHOGENIC_SCORE); - SiftScore equalScoreSift = new SiftScore(SIFT_PATHOGENIC_SCORE); - assertThat(sift.compareTo(equalScoreSift), equalTo(EQUALS)); - } - - @Test(expected = NullPointerException.class) - public void testCompareToAfterAgainstANullSiftScoreThrowsANullPointer() { - SiftScore pathogenic = new SiftScore(SIFT_PATHOGENIC_SCORE); - SiftScore nonPathogenic = null; - assertThat(pathogenic.compareTo(nonPathogenic), equalTo(MORE_PATHOGENIC)); - } - - @Test - public void testCompareToAfterAnotherPathogenicityScore() { - PathogenicityScore sift = new SiftScore(0.999f); - PathogenicityScore poly = new PolyPhenScore(0.999f); - assertThat(sift.compareTo(poly), equalTo(LESS_PATHOGENIC)); - } - - @Test - public void testCompareToBeforeAnotherPathogenicityScore() { - PathogenicityScore sift = new SiftScore(0.01f); - PathogenicityScore poly = new MutationTasterScore(0.01f); - assertThat(sift.compareTo(poly), equalTo(MORE_PATHOGENIC)); - } - - @Test - public void testCompareToEqualsAnotherPathogenicityScore() { - PathogenicityScore sift = new SiftScore(0.4f); - PathogenicityScore poly = new PolyPhenScore(0.6f); - assertThat(sift.compareTo(poly), equalTo(EQUALS)); - } - - @Test - public void testAnotherPathogenicityScoreCompareToEquals() { - PathogenicityScore sift = new SiftScore(0.4f); - PathogenicityScore poly = new PolyPhenScore(0.6f); - assertThat(poly.compareTo(sift), equalTo(EQUALS)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/VariantTypePathogenicityScoresTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/VariantTypePathogenicityScoresTest.java deleted file mode 100644 index ebcdf2026..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/pathogenicity/VariantTypePathogenicityScoresTest.java +++ /dev/null @@ -1,52 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.model.pathogenicity; - -import de.charite.compbio.jannovar.annotation.VariantEffect; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.Test; - -import com.google.common.collect.ImmutableList; - -/** - * - * @author jj8 - */ -public class VariantTypePathogenicityScoresTest { - - public VariantTypePathogenicityScoresTest() { - } - - @Before - public void setUp() { - } - - @Test - public void testGetPathogenicityScoreForDefaultMissense() { - VariantEffect variantEffect = VariantEffect.MISSENSE_VARIANT; - float result = VariantTypePathogenicityScores.getPathogenicityScoreOf(variantEffect); - assertThat(result, equalTo(VariantTypePathogenicityScores.DEFAULT_MISSENSE_SCORE)); - } - - @Test - public void testGetPathogenicityScoreForStartLoss() { - VariantEffect variantEffect = VariantEffect.START_LOST; - float result = VariantTypePathogenicityScores.getPathogenicityScoreOf(variantEffect); - assertThat(result, equalTo(VariantTypePathogenicityScores.STARTLOSS_SCORE)); - } - - @Test - public void testGetPathogenicityScoreForNonPathogenicVariantType() { - VariantEffect variantEffect = VariantEffect.DOWNSTREAM_GENE_VARIANT; - float result = VariantTypePathogenicityScores.getPathogenicityScoreOf(variantEffect); - assertThat(result, equalTo(VariantTypePathogenicityScores.NON_PATHOGENIC_SCORE)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/BasePriorityResult.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/BasePriorityResult.java deleted file mode 100644 index 25ca3ebf8..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/BasePriorityResult.java +++ /dev/null @@ -1,64 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.Objects; - -/** - * @author Jules Jacobsen - */ -public class BasePriorityResult implements PriorityResult { - - private final PriorityType priorityType; - private final float priorityScore; - - public BasePriorityResult(PriorityType PriorityType, float priorityScore) { - this.priorityType = PriorityType; - this.priorityScore = priorityScore; - } - - @Override - public PriorityType getPriorityType() { - return priorityType; - } - - @Override - public String getHTMLCode() { - return "Not implemented here"; - } - - @Override - public float getScore() { - return priorityScore; - } - - @Override - public int hashCode() { - int hash = 7; - hash = 47 * hash + Objects.hashCode(this.priorityType); - hash = 47 * hash + Float.floatToIntBits(this.priorityScore); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final BasePriorityResult other = (BasePriorityResult) obj; - if (this.priorityType != other.priorityType) { - return false; - } - if (Float.floatToIntBits(this.priorityScore) != Float.floatToIntBits(other.priorityScore)) { - return false; - } - return true; - } - - @Override - public String toString() { - return "BasePriorityResult{" + "priorityType=" + priorityType + ", priorityScore=" + priorityScore + '}'; - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriorityScoreTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriorityScoreTest.java deleted file mode 100644 index f3acfe996..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/ExomeWalkerPriorityScoreTest.java +++ /dev/null @@ -1,78 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen (jules.jacobsen@sanger.ac.uk) - */ -public class ExomeWalkerPriorityScoreTest { - - private ExomeWalkerPriorityResult instance; - private final float score = 1.0f; - - @Before - public void setUp() { - instance = new ExomeWalkerPriorityResult(score); - } - - @Test - public void testGetPriorityType() { - assertThat(instance.getPriorityType(), equalTo(PriorityType.EXOMEWALKER_PRIORITY)); - } - - @Test - public void testGetScore() { - assertThat(instance.getScore(), equalTo(score)); - } - - @Test - public void testNoPPIDataScoreHasScoreOfZero() { - ExomeWalkerPriorityResult noInteractionScore = ExomeWalkerPriorityResult.noPPIDataScore(); - assertThat(noInteractionScore.getScore(), equalTo(0.0f)); - } - - @Test - public void testGetHTMLCode() { - } - - @Test - public void testGetRawScore() { - assertThat(instance.getRawScore(), equalTo((double) score)); - } - - @Test - public void testRawScoreIsUnchangedWhenScoreIsSet() { - instance.setScore(0.5f); - assertThat(instance.getRawScore(), equalTo((double) score)); - } - - @Test - public void testGetScaledScore() { - assertThat(instance.getScaledScore(), equalTo(-10d)); - } - - @Test - public void testGetScaledScoreIsChangedToNewScoreWhenScoreIsSet() { - float newScore = 0.5f; - instance.setScore(newScore); - assertThat(instance.getScaledScore(), equalTo((double) newScore)); - } - - @Test - public void testSetScore() { - float newScore = 0.5f; - instance.setScore(newScore); - assertThat(instance.getScore(), equalTo(newScore)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhiveOptionsTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhiveOptionsTest.java deleted file mode 100644 index 1fd30256d..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhiveOptionsTest.java +++ /dev/null @@ -1,271 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.DiseaseModel; -import de.charite.compbio.exomiser.core.model.GeneModel; -import de.charite.compbio.exomiser.core.model.Model; - -import de.charite.compbio.exomiser.core.prioritisers.HiPhiveOptions.InvalidRunParameterException; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.not; -import static org.hamcrest.MatcherAssert.assertThat; - -import de.charite.compbio.exomiser.core.model.Organism; -import org.junit.Before; -import org.junit.Test; - -import java.util.ArrayList; - -/** - * @author Jules Jacobsen - */ -public class HiPhiveOptionsTest { - - - private HiPhiveOptions instance; - private Model model; - - @Before - public void setUp() { - instance = new HiPhiveOptions(); - model = new DiseaseModel("OMIM:101600", Organism.HUMAN, 12345, "Gene1", "DISEASE:1", "Test disease", new ArrayList()); - } - - private void assertAllRunParamsAreTrue(HiPhiveOptions hiPhiveOptions) { - assertThat(instance.runHuman(), is(true)); - assertThat(instance.runMouse(), is(true)); - assertThat(instance.runFish(), is(true)); - assertThat(instance.runPpi(), is(true)); - } - - @Test - public void testReturnsFalseWithDefaultConstructor() { - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void testIsNotBenchmarkingEnabledDefaultConstructor() { - assertThat(instance.isBenchmarkingEnabled(), is(false)); - } - - @Test - public void testIsBenchmarkingEnabledUsingParameterisedConstructor() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol"); - assertThat(instance.isBenchmarkingEnabled(), is(true)); - } - - @Test - public void testAllRunParametersAreTrueByDefault() { - assertAllRunParamsAreTrue(instance); - } - - @Test - public void testAllRunParametersAreTrueUsingParameterisedConstructorWithoutRunParameters() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol"); - assertAllRunParamsAreTrue(instance); - } - - @Test - public void testAllRunParametersAreTrueUsingParameterisedConstructorAndEmptyRunParameters() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol", ""); - assertAllRunParamsAreTrue(instance); - } - - @Test(expected = InvalidRunParameterException.class) - public void testThrowsInvalidRunParameterExceptionWhenEncountersUnrecognisedRunParameter() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol", "floorb"); - } - - @Test - public void testSetsRunHumanTrueAllOthersFalseWhenOnlyHumanSpecifiedInParameters() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol", "human"); - assertThat(instance.runHuman(), is(true)); - assertThat(instance.runMouse(), is(false)); - assertThat(instance.runFish(), is(false)); - assertThat(instance.runPpi(), is(false)); - } - - @Test - public void testSetsRunHumanMouseTrueAllOthersFalseWhenOnlyHumanMouseSpecifiedInParameters() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol", "human,mouse"); - assertThat(instance.runHuman(), is(true)); - assertThat(instance.runMouse(), is(true)); - assertThat(instance.runFish(), is(false)); - assertThat(instance.runPpi(), is(false)); - } - - @Test - public void testSetsRunHumanMouseFishTrueRunPpiFalseWhenOnlyHumanMouseFishSpecifiedInParameters() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol", "human,mouse,fish"); - assertThat(instance.runHuman(), is(true)); - assertThat(instance.runMouse(), is(true)); - assertThat(instance.runFish(), is(true)); - assertThat(instance.runPpi(), is(false)); - } - - @Test - public void testSetsRunHumanMouseFishPpiTrueHumanMouseFishPpiSpecifiedInParameters() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol", "human,mouse,fish,ppi"); - assertThat(instance.runHuman(), is(true)); - assertThat(instance.runMouse(), is(true)); - assertThat(instance.runFish(), is(true)); - assertThat(instance.runPpi(), is(true)); - } - - @Test - public void testGetDiseaseId() { - String diseaseId = "OMIM:101600"; - String candidateGeneSymbol = "Gene1"; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - assertThat(instance.getDiseaseId(), equalTo(diseaseId)); - } - - @Test - public void testGetCandidateGeneSymbol() { - String diseaseId = "OMIM:101600"; - String candidateGeneSymbol = "Gene1"; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - assertThat(instance.getCandidateGeneSymbol(), equalTo(candidateGeneSymbol)); - } - - @Test - public void returnsTrueWhenDiseaseIdMatchesModelIdAndGeneSymbolMatchesModelHumanGeneSymbolForDiseaseModel() { - String diseaseId = "OMIM:101600"; - String candidateGeneSymbol = "Gene1"; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - assertThat(instance.isBenchmarkHit(model), is(true)); - } - - @Test - public void returnsTrueWhenDiseaseIdMatchesModelIdAndGeneSymbolMatchesModelHumanGeneSymbolForGeneModel() { - Model model = new GeneModel("OMIM:101600", Organism.HUMAN, 12345, "Gene1", "DISEASE:1", "Test disease", new ArrayList()); - - String diseaseId = "OMIM:101600"; - String candidateGeneSymbol = "Gene1"; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - assertThat(instance.isBenchmarkHit(model), is(true)); - } - - @Test - public void returnsFalseWhenDiseaseIdAndGeneSymbolAreEmpty() { - String diseaseId = ""; - String candidateGeneSymbol = ""; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void isBenchmarkingEnabledreturnsFalseWhenDiseaseIdOrGeneSymbolAreEmpty() { - HiPhiveOptions emptyGeneSymbol = new HiPhiveOptions("disease", ""); - assertThat(emptyGeneSymbol.isBenchmarkingEnabled(), is(false)); - - HiPhiveOptions emptyDiseaseId = new HiPhiveOptions("", "candidateGeneSymbol"); - assertThat(emptyDiseaseId.isBenchmarkingEnabled(), is(false)); - } - - @Test - public void returnsFalseWhenDiseaseIdAndGeneSymbolAreNull() { - String diseaseId = null; - String candidateGeneSymbol = null; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void returnsFalseWhenDiseaseIdMatchesModelIdAndGeneSymbolIsEmpty() { - String diseaseId = "OMIM:101600"; - String candidateGeneSymbol = ""; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void returnsFalseWhenDiseaseIdMatchesModelIdAndGeneSymbolIsNull() { - String diseaseId = "OMIM:101600"; - String candidateGeneSymbol = null; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void returnsFalseWhenGeneSymbolMatchesModelHumanGeneSymbolAndDiseaseIdIsNull() { - String diseaseId = null; - String candidateGeneSymbol = "Gene1"; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void returnsFalseWhenGeneSymbolMatchesModelHumanGeneSymbolAndDiseaseIdIsEmpty() { - String diseaseId = ""; - String candidateGeneSymbol = "Gene1"; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void returnsFalseWhenModelIdIsNull() { - Model model = new DiseaseModel(null, Organism.HUMAN, 12345, "Gene1", "DISEASE:1", "Test disease", new ArrayList()); - - String diseaseId = "OMIM:101600"; - String candidateGeneSymbol = "Gene1"; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void returnsFalseWhenHumanGeneSymbolIsNull() { - Model model = new DiseaseModel("OMIM:101600", Organism.HUMAN, 12345, null, "DISEASE:1", "Test disease", new ArrayList()); - - String diseaseId = "OMIM:101600"; - String candidateGeneSymbol = "Gene1"; - instance = new HiPhiveOptions(diseaseId, candidateGeneSymbol); - assertThat(instance.isBenchmarkHit(model), is(false)); - } - - @Test - public void testHashCode() { - HiPhiveOptions other = new HiPhiveOptions(); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - - @Test - public void testHashCodeNotEquals() { - HiPhiveOptions other = new HiPhiveOptions("disease", "geneSymbol"); - assertThat(instance.hashCode(), not(equalTo(other.hashCode()))); - } - - @Test - public void testEquals() { - HiPhiveOptions other = new HiPhiveOptions(); - assertThat(instance.equals(other), is(true)); - } - - @Test - public void testNotEquals() { - HiPhiveOptions other = new HiPhiveOptions("disease", "geneSymbol"); - assertThat(instance.equals(other), is(false)); - } - - @Test - public void testToStringDefaultConstructor() { - String defaultString = "HiPhiveOptions{diseaseId='', candidateGeneSymbol='', benchmarkingEnabled=false, runPpi=true, runHuman=true, runMouse=true, runFish=true}"; - assertThat(instance.toString(), equalTo(defaultString)); - } - - @Test - public void testToStringParameterisedConstructor() { - instance = new HiPhiveOptions("diseaseId", "geneSymbol", "human,mouse"); - String defaultString = "HiPhiveOptions{diseaseId='diseaseId', candidateGeneSymbol='geneSymbol', benchmarkingEnabled=true, runPpi=false, runHuman=true, runMouse=true, runFish=false}"; - assertThat(instance.toString(), equalTo(defaultString)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityResultTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityResultTest.java deleted file mode 100644 index d231413ad..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityResultTest.java +++ /dev/null @@ -1,151 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.GeneModel; -import de.charite.compbio.exomiser.core.model.Model; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import de.charite.compbio.exomiser.core.model.Organism; -import java.util.ArrayList; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class HiPhivePriorityResultTest { - - private HiPhivePriorityResult instance; - private final String geneSymbol = "FGFR2"; - private final double score = 0.87d; - private List queryPhenotypeTerms; - private List phenotypeEvidence; - private List ppiEvidence; - private final double walkerScore = 0.6d; - private final boolean matchesCandidateGene = true; - - @Before - public void setUp() { - queryPhenotypeTerms = new ArrayList<>(); - phenotypeEvidence = new ArrayList<>(); - ppiEvidence = new ArrayList<>(); - instance = new HiPhivePriorityResult(geneSymbol, score, queryPhenotypeTerms, phenotypeEvidence, ppiEvidence, walkerScore, matchesCandidateGene); - } - - private GeneModel makeStubGeneModelForOrganismWithScore(Organism organism, double score) { - GeneModel model = new GeneModel("gene1_model1", organism, 12345, geneSymbol, "MGI:12345", "gene1", null); - model.setScore(score); - return model; - } - - @Test - public void testGetPriorityType() { - assertThat(instance.getPriorityType(), equalTo(PriorityType.HIPHIVE_PRIORITY)); - } - - @Test - public void testGetGeneSymbol() { - assertThat(instance.getGeneSymbol(), equalTo(geneSymbol)); - } - - @Test - public void testGetScore() { - assertThat(instance.getScore(), equalTo((float) score)); - } - - @Test - public void testSetScore() { - double newScore = 1.0d; - instance.setScore(newScore); - assertThat(instance.getScore(), equalTo((float) newScore)); - } - - @Test - public void testGetQueryPhenotypeTerms() { - assertThat(instance.getQueryPhenotypeTerms(), equalTo(queryPhenotypeTerms)); - } - - @Test - public void testGetPhenotypeEvidence() { - assertThat(instance.getPhenotypeEvidence(), equalTo(phenotypeEvidence)); - } - - @Test - public void testGetPpiEvidence() { - assertThat(instance.getPpiEvidence(), equalTo(ppiEvidence)); - } - - @Test - public void testGetHTMLCode() { - assertThat(instance.getHTMLCode(), equalTo("
    No phenotype or PPI evidence
    ")); - } - - @Test - public void testGetHumanScoreIsZeroWithNoDiseaseEvidence() { - assertThat(instance.getHumanScore(), equalTo(0f)); - } - - @Test - public void testGetHumanScoreMatchesModelScore() { - double modelScore = 1f; - GeneModel geneModel = makeStubGeneModelForOrganismWithScore(Organism.HUMAN, modelScore); - - List models = new ArrayList<>(); - models.add(geneModel); - instance = new HiPhivePriorityResult(geneSymbol, score, queryPhenotypeTerms, models, ppiEvidence, walkerScore, false); - - assertThat(instance.getHumanScore(), equalTo((float) modelScore)); - } - - @Test - public void testGetMouseScoreIsZeroWithNoDiseaseEvidence() { - assertThat(instance.getMouseScore(), equalTo(0f)); - } - - @Test - public void testGetMouseScoreMatchesModelScore() { - double modelScore = 1f; - GeneModel geneModel = makeStubGeneModelForOrganismWithScore(Organism.MOUSE, modelScore); - - List models = new ArrayList<>(); - models.add(geneModel); - instance = new HiPhivePriorityResult(geneSymbol, score, queryPhenotypeTerms, models, ppiEvidence, walkerScore, false); - - assertThat(instance.getMouseScore(), equalTo((float) modelScore)); - } - - @Test - public void testGetFishScoreIsZeroWithNoDiseaseEvidence() { - assertThat(instance.getFishScore(), equalTo(0f)); - } - - @Test - public void testGetFishScoreMatchesModelScore() { - double modelScore = 1f; - GeneModel geneModel = makeStubGeneModelForOrganismWithScore(Organism.FISH, modelScore); - - List models = new ArrayList<>(); - models.add(geneModel); - instance = new HiPhivePriorityResult(geneSymbol, score, queryPhenotypeTerms, models, ppiEvidence, walkerScore, false); - - assertThat(instance.getFishScore(), equalTo((float) modelScore)); - } - - @Test - public void testGetWalkerScore() { - assertThat(instance.getWalkerScore(), equalTo((float) walkerScore)); - } - - @Test - public void testIsCandidateGeneMatch_MatchesConstructorArg() { - assertThat(instance.isCandidateGeneMatch(), is(matchesCandidateGene)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityTest.java deleted file mode 100644 index 9303aad92..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/HiPhivePriorityTest.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.ArrayList; -import java.util.List; - -import de.charite.compbio.exomiser.core.model.Gene; -import org.junit.Before; -import org.junit.Ignore; -import org.junit.Test; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.*; - -/** - * - * @author jj8 - */ -public class HiPhivePriorityTest { - - private HiPhivePriority instance; - - private List hpoIds; - private String candidateGene; - private String disease; - private String exomiser2params; - - @Before - public void setUp() { - hpoIds = new ArrayList<>(); - hpoIds.add("HP:000001"); - hpoIds.add("HP:000002"); - hpoIds.add("HP:000003"); - - candidateGene = "GENE1"; - disease = "OMIM:100100"; - exomiser2params = ""; - - instance = new HiPhivePriority(hpoIds, new HiPhiveOptions(), null); - } - - @Test - public void testGetPriorityType() { - assertThat(instance.getPriorityType(), equalTo(PriorityType.HIPHIVE_PRIORITY)); - } - - @Ignore - @Test - public void testPrioritizeGenes() { - instance.prioritizeGenes(new ArrayList()); - } - - - @Ignore - @Test - public void testPrioritizeGenesInBenchmarkingMode() { - instance = new HiPhivePriority(hpoIds, new HiPhiveOptions(disease, candidateGene), null); - instance.prioritizeGenes(new ArrayList()); - } - - @Test - public void testSetPriorityService() { - } - - @Test - public void testToString() { - System.out.println(instance); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/MockPrioritiser.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/MockPrioritiser.java deleted file mode 100644 index 949f450b5..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/MockPrioritiser.java +++ /dev/null @@ -1,63 +0,0 @@ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.model.Gene; - -import java.util.List; -import java.util.Map; - -/** - * Class for mocking a Prioritiser of the given PriorityType. Will score genes with scores specified for the geneIds - * supplied in the constructor with the type. - * - * @author Jules Jacobsen - */ -public class MockPrioritiser implements Prioritiser { - - private final PriorityType priorityType; - private final Map expectedScores; - - public MockPrioritiser(PriorityType priorityType, Map geneSymbolPrioritiserScores) { - this.priorityType = priorityType; - expectedScores = geneSymbolPrioritiserScores; - } - - @Override - public void prioritizeGenes(List genes) { - for (Gene gene : genes) { - Float score = expectedScores.getOrDefault(gene.getGeneSymbol(), 0f); - gene.addPriorityResult(new BasePriorityResult(priorityType, score)); - } - } - - @Override - public PriorityType getPriorityType() { - return priorityType; - } - - @Override - public boolean equals(Object o) { - if (this == o) return true; - if (o == null || getClass() != o.getClass()) return false; - - MockPrioritiser that = (MockPrioritiser) o; - - if (priorityType != that.priorityType) return false; - return expectedScores.equals(that.expectedScores); - - } - - @Override - public int hashCode() { - int result = priorityType.hashCode(); - result = 31 * result + expectedScores.hashCode(); - return result; - } - - @Override - public String toString() { - return "MockPrioritiser{" + - "priorityType=" + priorityType + - ", expectedScores=" + expectedScores + - '}'; - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/MockPriorityResult.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/MockPriorityResult.java deleted file mode 100644 index faa24eb1e..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/MockPriorityResult.java +++ /dev/null @@ -1,31 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.prioritisers; - -/** - * @author Jules Jacobsen - */ -public class MockPriorityResult extends AbstractPriorityResult { - - public MockPriorityResult(PriorityType PriorityType, int geneId, String geneSymbol, double score) { - super(PriorityType, geneId, geneSymbol, score); - } - -} \ No newline at end of file diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePrioritiserTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePrioritiserTest.java deleted file mode 100644 index a7ee2459b..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePrioritiserTest.java +++ /dev/null @@ -1,43 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import java.util.Collections; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author Jules Jacobsen - */ -public class NoneTypePrioritiserTest { - - private NoneTypePrioritiser instance; - - @Before - public void setUp() { - instance = new NoneTypePrioritiser(); - } - - @Test - public void testRunAnalysisHasNoEffectOnGenes() { - instance.prioritizeGenes(null); - } - - @Test - public void testGetPriorityTypeReturnsNoneType() { - assertThat(instance.getPriorityType(), equalTo(PriorityType.NONE)); - } - - @Test - public void testToString(){ - assertThat(instance.toString(), equalTo("NoneTypePrioritiser{}")); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePriorityFactoryStub.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePriorityFactoryStub.java deleted file mode 100644 index 0ce11d901..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/NoneTypePriorityFactoryStub.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.prioritisers.util.DataMatrix; -import java.util.LinkedHashMap; -import java.util.List; -import java.util.Map; -import org.jblas.FloatMatrix; - -/** - * - * @author Jules Jacobsen - */ -public class NoneTypePriorityFactoryStub implements PriorityFactory { - - @Override - public Prioritiser makePrioritiser(PriorityType priorityType, PrioritiserSettings settings) { - return new NoneTypePrioritiser(); - } - - @Override - public OMIMPriority makeOmimPrioritiser() { - return new OMIMPriority(); - } - - @Override - public PhenixPriority makePhenixPrioritiser(List hpoIds) { - return new PhenixPriority(hpoIds, true); - } - - @Override - public PhivePriority makePhivePrioritiser(List hpoIds) { - return new PhivePriority(hpoIds); - } - - @Override - public ExomeWalkerPriority makeExomeWalkerPrioritiser(List entrezSeedGenes) { - DataMatrix stubDataMatrix = makeDataMatrixWithGeneIds(entrezSeedGenes); - return new ExomeWalkerPriority(stubDataMatrix, entrezSeedGenes); - } - - @Override - public HiPhivePriority makeHiPhivePrioritiser(List hpoIds, HiPhiveOptions hiPhiveOptions) { - return new HiPhivePriority(hpoIds, hiPhiveOptions, null); - } - - private DataMatrix makeDataMatrixWithGeneIds(List entrezSeedGenes) { - Map matrixMap = new LinkedHashMap<>(); - - for (int i = 0; i < entrezSeedGenes.size(); i++) { - Integer geneId = entrezSeedGenes.get(i); - matrixMap.put(geneId, i); - } - - DataMatrix dataMatrix = new DataMatrix(FloatMatrix.zeros(entrezSeedGenes.size(), entrezSeedGenes.size()), matrixMap); - - return dataMatrix; - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserRunnerTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserRunnerTest.java deleted file mode 100644 index 02f768d57..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PrioritiserRunnerTest.java +++ /dev/null @@ -1,64 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.filters.FailFilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.model.Gene; -import java.util.ArrayList; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; - -/** - * - * @author jj8 - */ -public class PrioritiserRunnerTest { - - private PrioritiserRunner instance; - - private List prioritisers; - - private Gene genePassedFilters; - private Gene geneFailedFilters; - private List genes; - - - @Before - public void setUp() { - instance = new PrioritiserRunner(); - prioritisers = new ArrayList<>(); - genes = new ArrayList<>(); - genePassedFilters = new Gene("PASSED_FILTERS", 12345); - geneFailedFilters = new Gene("FAILED_FILTERS", 23456); - geneFailedFilters.addFilterResult(new FailFilterResult(FilterType.VARIANT_EFFECT_FILTER)); - genes.add(genePassedFilters); - genes.add(geneFailedFilters); - } - - @Test - public void testPrioritiseFilteredGenesReturnsListOfFilteredGenesOnly() { - prioritisers.add(new NoneTypePrioritiser()); - - List passedGenes = new ArrayList<>(); - passedGenes.add(genePassedFilters); - - List filteredGenes = instance.prioritiseFilteredGenes(prioritisers, genes); - assertThat(filteredGenes, equalTo(passedGenes)); - } - - @Test - public void testPrioritiseGenes_ReturnsListOfAllGenesRegardlessOfFilterStatus() { - prioritisers.add(new NoneTypePrioritiser()); - - List filteredGenes = instance.prioritiseGenes(prioritisers, genes); - assertThat(filteredGenes, equalTo(genes)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryImplTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryImplTest.java deleted file mode 100644 index 46e63c509..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryImplTest.java +++ /dev/null @@ -1,115 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.prioritisers.PrioritiserSettingsImpl.PrioritiserSettingsBuilder; -import java.util.Collections; -import java.util.List; -import static org.hamcrest.CoreMatchers.*; -import org.junit.Test; -import static org.junit.Assert.*; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.jdbc.Sql; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@ContextConfiguration(classes = PriorityFactoryTestConfig.class) -@Sql(scripts = {"file:src/test/resources/sql/create_disease.sql", "file:src/test/resources/sql/create_disease_hp.sql", "file:src/test/resources/sql/diseaseDaoTestData.sql"}) -public class PriorityFactoryImplTest { - - @Autowired - private PriorityFactoryImpl instance; - - private PrioritiserSettings buildValidSettingsWithPrioritiser(PriorityType priorityType) { - PrioritiserSettingsBuilder settingsBuilder = new PrioritiserSettingsBuilder(); - settingsBuilder.usePrioritiser(priorityType); - return settingsBuilder.build(); - } - - @Test - public void testCanGetOmimPrioritizerByType() { - PriorityType type = PriorityType.OMIM_PRIORITY; - PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); - - Prioritiser prioritiser = instance.makePrioritiser(type, settings); - assertThat(prioritiser.getPriorityType(), equalTo(type)); - } - - @Test - public void testmakePrioritiserForExomeWalkerPriority() { - PriorityType type = PriorityType.EXOMEWALKER_PRIORITY; - PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); - - Prioritiser prioritiser = instance.makePrioritiser(type, settings); - assertThat(prioritiser.getPriorityType(), equalTo(type)); - } - - @Test - public void testmakePrioritiserForHiPhivePriority() { - PriorityType type = PriorityType.HIPHIVE_PRIORITY; - PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); - - Prioritiser prioritiser = instance.makePrioritiser(type, settings); - assertThat(prioritiser.getPriorityType(), equalTo(type)); - } - - @Test - public void testmakeHiPhivePrioritiserWithDiseaseIdAndEmptyHpoList() { - PriorityType type = PriorityType.HIPHIVE_PRIORITY; - List emptyStringList = Collections.emptyList(); - PrioritiserSettings settings = new PrioritiserSettingsBuilder() - .usePrioritiser(type) - .diseaseId("OMIM:101600") - .hpoIdList(emptyStringList) - .build(); - - Prioritiser prioritiser = instance.makePrioritiser(type, settings); - assertThat(prioritiser.getPriorityType(), equalTo(type)); - } - - @Test - public void testmakePrioritiserForPhivePriority() { - PriorityType type = PriorityType.PHIVE_PRIORITY; - PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); - - Prioritiser prioritiser = instance.makePrioritiser(type, settings); - assertThat(prioritiser.getPriorityType(), equalTo(type)); - } - - @Test(expected = RuntimeException.class) - public void testmakePrioritiserForPhenixPriorityThrowsRuntimeExceptionDueToMissingPhenixData() { - PriorityType type = PriorityType.PHENIX_PRIORITY; - PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); - - Prioritiser prioritiser = instance.makePrioritiser(type, settings); - assertThat(prioritiser.getPriorityType(), equalTo(type)); - } - - @Test - public void testmakePrioritiserForUberPhenoPriorityReturnsNoneTypePrioritiser() { - PriorityType type = PriorityType.UBERPHENO_PRIORITY; - PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); - - Prioritiser prioritiser = instance.makePrioritiser(type, settings); - assertThat(prioritiser.getPriorityType(), equalTo(PriorityType.NONE)); - } - - @Test - public void testmakePrioritiserNonePriorityReturnsNoneTypePrioritiser() { - PriorityType type = PriorityType.NONE; - PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); - - Prioritiser prioritiser = instance.makePrioritiser(type, settings); - assertThat(prioritiser.getPriorityType(), equalTo(PriorityType.NONE)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryTestConfig.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryTestConfig.java deleted file mode 100644 index 939fa216f..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityFactoryTestConfig.java +++ /dev/null @@ -1,96 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers; - -import de.charite.compbio.exomiser.core.dao.DefaultDiseaseDao; -import de.charite.compbio.exomiser.core.dao.DiseaseDao; -import de.charite.compbio.exomiser.core.dao.HumanPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.MousePhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.ZebraFishPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.prioritisers.util.DataMatrix; -import de.charite.compbio.exomiser.core.prioritisers.util.ModelService; -import de.charite.compbio.exomiser.core.prioritisers.util.ModelServiceImpl; -import de.charite.compbio.exomiser.core.prioritisers.util.OntologyService; -import de.charite.compbio.exomiser.core.prioritisers.util.OntologyServiceImpl; -import de.charite.compbio.exomiser.core.prioritisers.util.PriorityService; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.HashMap; -import java.util.Map; -import javax.sql.DataSource; -import org.h2.jdbcx.JdbcConnectionPool; -import org.jblas.FloatMatrix; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; - -/** - * - * @author Jules Jacobsen - */ -@Configuration -public class PriorityFactoryTestConfig { - - @Bean - DataSource dataSource() { - String url = "jdbc:h2:mem:exomiser;MODE=PostgreSQL;DATABASE_TO_UPPER=FALSE;"; - String user = "sa"; - String password = "sa"; - - JdbcConnectionPool dataSource = JdbcConnectionPool.create(url, user, password); - return dataSource; - } - - @Bean - PriorityFactoryImpl priorityFactory() { - return new PriorityFactoryImpl(); - } - - @Bean - DataMatrix randomWalkMatrix() { - Map stubMatrixIndex = new HashMap<>(); - return new DataMatrix(FloatMatrix.EMPTY, stubMatrixIndex); - } - - @Bean - Path phenixDataDirectory() { - return Paths.get("stubPhenixDataDir"); - } - - @Bean - PriorityService priorityService() { - return new PriorityService(); - } - - @Bean - ModelService modelService() { - return new ModelServiceImpl(); - } - - @Bean - OntologyService ontologyService() { - return new OntologyServiceImpl(); - } - - @Bean - DiseaseDao diseaseDao() { - return new DefaultDiseaseDao(); - } - - @Bean - HumanPhenotypeOntologyDao humanPhenotypeOntologyDao() { - return new HumanPhenotypeOntologyDao(); - } - - @Bean - MousePhenotypeOntologyDao mousePhenotypeOntologyDao() { - return new MousePhenotypeOntologyDao(); - } - - @Bean - ZebraFishPhenotypeOntologyDao zebraFishPhenotypeOntologyDao() { - return new ZebraFishPhenotypeOntologyDao(); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityTypeTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityTypeTest.java deleted file mode 100644 index dc61fa36c..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/PriorityTypeTest.java +++ /dev/null @@ -1,28 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.prioritisers; - -import static org.hamcrest.CoreMatchers.equalTo; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PriorityTypeTest { - - /** - * Test of toString method, of class PriorityType. - */ - @Test - public void testToString() { - PriorityType instance = PriorityType.PHIVE_PRIORITY; - assertThat(instance.toString(), equalTo("PHIVE_PRIORITY")); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/util/DataMatrixTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/util/DataMatrixTest.java deleted file mode 100644 index a886b5b4a..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/util/DataMatrixTest.java +++ /dev/null @@ -1,126 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import java.util.Map; -import java.util.TreeMap; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; -import org.jblas.FloatMatrix; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class DataMatrixTest { - - private DataMatrix instance; - - private FloatMatrix floatMatrix; - private Map entrezIdToRowIndex; - private Map rowToEntrezIdIndex; - - @Before - public void setUp() { - floatMatrix = new FloatMatrix(4, 4); - - //floatMatrix.put(row, column, value); - floatMatrix.put(0, 0, 00); - floatMatrix.put(0, 1, 01); - floatMatrix.put(0, 2, 02); - floatMatrix.put(0, 3, 03); - - floatMatrix.put(1, 0, 10); - floatMatrix.put(1, 1, 11); - floatMatrix.put(1, 2, 12); - floatMatrix.put(1, 3, 13); - - floatMatrix.put(2, 0, 20); - floatMatrix.put(2, 1, 21); - floatMatrix.put(2, 2, 22); - floatMatrix.put(2, 3, 23); - - floatMatrix.put(3, 0, 30); - floatMatrix.put(3, 1, 31); - floatMatrix.put(3, 2, 32); - floatMatrix.put(3, 3, 33); - - entrezIdToRowIndex = new TreeMap<>(); - entrezIdToRowIndex.put(0000, 0); - entrezIdToRowIndex.put(1111, 1); - entrezIdToRowIndex.put(2222, 2); - entrezIdToRowIndex.put(3333, 3); - - rowToEntrezIdIndex = new TreeMap<>(); - rowToEntrezIdIndex.put(0, 0000); - rowToEntrezIdIndex.put(1, 1111); - rowToEntrezIdIndex.put(2, 2222); - rowToEntrezIdIndex.put(3, 3333); - - instance = new DataMatrix(floatMatrix, entrezIdToRowIndex); - } - - @Test - public void testGetObjectid2idx() { - assertThat(instance.getEntrezIdToRowIndex(), equalTo(entrezIdToRowIndex)); - } - - @Test - public void testGetData() { - assertThat(instance.getMatrix(), equalTo(floatMatrix)); - } - - @Test - public void testGetMatrixName() { - assertThat(instance.getName(), equalTo("")); - } - - @Test - public void testContainsGeneIsTrue() { - assertThat(instance.containsGene(0000), is(true)); - } - - @Test - public void testContainsGeneIsFalse() { - assertThat(instance.containsGene(9999), is(false)); - } - - @Test - public void testGetRowIndexForGeneInIndex() { - assertThat(instance.getRowIndexForGene(3333), equalTo(3)); - } - - @Test - public void testGetRowIndexForGeneNotInIndex() { - assertThat(instance.getRowIndexForGene(9999), nullValue()); - } - - @Test - public void testGetColumnMatrixForGeneInIndex() { - //expect a new single column matrix with 4 rows - FloatMatrix geneColumn = new FloatMatrix(4, 1); - geneColumn.put(0, 0, 03); - geneColumn.put(1, 0, 13); - geneColumn.put(2, 0, 23); - geneColumn.put(3, 0, 33); - - assertThat(instance.getColumnMatrixForGene(3333), equalTo(geneColumn)); - } - -// -// @Test -// public void testWriteMatrix() { -// } -// -// @Test -// public void testWriteMatrixInclHeaderAndRowIDs() { -// } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyServiceImplTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyServiceImplTest.java deleted file mode 100644 index 3aa7006c7..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/prioritisers/util/OntologyServiceImplTest.java +++ /dev/null @@ -1,151 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.prioritisers.util; - -import de.charite.compbio.exomiser.core.dao.DiseaseDao; -import de.charite.compbio.exomiser.core.dao.HumanPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.MousePhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.OntologyDao; -import de.charite.compbio.exomiser.core.dao.ZebraFishPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.HashSet; -import java.util.List; -import java.util.Set; -import java.util.TreeSet; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.InjectMocks; -import org.mockito.Mock; -import org.mockito.Mockito; -import org.mockito.runners.MockitoJUnitRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(MockitoJUnitRunner.class) -public class OntologyServiceImplTest { - - @InjectMocks - private OntologyServiceImpl instance; - - @Mock - DiseaseDao mockDiseaseDao; - - @Mock - HumanPhenotypeOntologyDao mockHpoDao; - @Mock - MousePhenotypeOntologyDao mockMpoDao; - @Mock - ZebraFishPhenotypeOntologyDao mockZpoDao; - - private final String diseaseIdInDatabase = "DISEASE:00000"; - private final String diseaseIdNotInDatabase = "DISEASE:99999"; - private Set diseaseHpoIds; - private Set hpoTerms; - private Set mpoTerms; - private Set zpoTerms; - - private final PhenotypeTerm fingerJointHyperExtensibility = new PhenotypeTerm("HP:0001187", "Hyperextensibility of the finger joints", 0.0); - private final PhenotypeTerm conjunctivalNodule = new PhenotypeTerm("HP:0009903", "Conjunctival nodule", 0.0); - private final PhenotypeTerm cleftHelix = new PhenotypeTerm("HP:0009902", "Cleft helix", 0.0); - private final PhenotypeTerm thinEarHelix = new PhenotypeTerm("HP:0009905", "Thin ear helix", 0.0); - - @Before - public void setUp() { - diseaseHpoIds = new TreeSet<>(); - diseaseHpoIds.addAll(Arrays.asList("HP:000000", "HP:000001", "HP:000002", "HP:000003", "HP:000004")); - - hpoTerms = new HashSet<>(); - setUpHpoTerms(); - - setUpDaoMocks(); - } - - private void setUpHpoTerms() { - hpoTerms.add(fingerJointHyperExtensibility); - hpoTerms.add(conjunctivalNodule); - hpoTerms.add(cleftHelix); - hpoTerms.add(thinEarHelix); - } - - private void setUpDaoMocks() { - setUpDiseaseDaoMock(); - Mockito.when(mockHpoDao.getAllTerms()).thenReturn(hpoTerms); - Mockito.when(mockHpoDao.getPhenotypeMatchesForHpoTerm((PhenotypeTerm) Mockito.any())).thenReturn(Collections.EMPTY_SET); - - Mockito.when(mockMpoDao.getAllTerms()).thenReturn(mpoTerms); - Mockito.when(mockMpoDao.getPhenotypeMatchesForHpoTerm((PhenotypeTerm) Mockito.any())).thenReturn(Collections.EMPTY_SET); - - Mockito.when(mockZpoDao.getAllTerms()).thenReturn(zpoTerms); - Mockito.when(mockZpoDao.getPhenotypeMatchesForHpoTerm((PhenotypeTerm) Mockito.any())).thenReturn(Collections.EMPTY_SET); - } - - private void setUpDiseaseDaoMock() { - Mockito.when(mockDiseaseDao.getHpoIdsForDiseaseId(diseaseIdInDatabase)).thenReturn(diseaseHpoIds); - Set emptyStringSet = Collections.emptySet(); - Mockito.when(mockDiseaseDao.getHpoIdsForDiseaseId(diseaseIdNotInDatabase)).thenReturn(emptyStringSet); - } - - @Test - public void testGetHpoIdsForDiseaseInDatabase() { - List diseaseHpoIdList = new ArrayList<>(diseaseHpoIds); - assertThat(instance.getHpoIdsForDiseaseId(diseaseIdInDatabase), equalTo(diseaseHpoIdList)); - } - - @Test - public void testGetHpoIdsForDiseaseNotInDatabaseReturnsEmptyList() { - assertThat(instance.getHpoIdsForDiseaseId(diseaseIdNotInDatabase).isEmpty(), is(true)); - } - - @Test - public void testGetHpoTerms() { - assertThat(instance.getHpoTerms(), equalTo(hpoTerms)); - } - - @Test - public void testGetMpoTerms() { - assertThat(instance.getMpoTerms(), equalTo(mpoTerms)); - } - - @Test - public void testGetZpoTerms() { - assertThat(instance.getZpoTerms(), equalTo(zpoTerms)); - } - - @Test - public void canGetPhenotypeMatchesForHpoTerm() { - assertThat(instance.getHpoMatchesForHpoTerm(cleftHelix), equalTo(Collections.EMPTY_SET)); - } - - @Test - public void canGetPhenotypeMatchesForMpoTerm() { - assertThat(instance.getMpoMatchesForHpoTerm(cleftHelix), equalTo(Collections.EMPTY_SET)); - } - - @Test - public void canGetPhenotypeMatchesForZpoTerm() { - assertThat(instance.getZpoMatchesForHpoTerm(cleftHelix), equalTo(Collections.EMPTY_SET)); - } - - @Test - public void testReturnsPhenotypeTermForGivenHpoId() { - assertThat(instance.getPhenotypeTermForHpoId(fingerJointHyperExtensibility.getId()), equalTo(fingerJointHyperExtensibility)); - } - - @Test - public void testReturnsNullForGivenHpoIdWhenHpoIdIsUnrecognised() { - assertThat(instance.getPhenotypeTermForHpoId("invalidId"), equalTo(null)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/HtmlResultsWriterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/HtmlResultsWriterTest.java deleted file mode 100644 index 99c963e15..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/HtmlResultsWriterTest.java +++ /dev/null @@ -1,186 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.TestAnalysisBuilder; -import de.charite.compbio.exomiser.core.factories.TestVariantFactory; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.filters.PassFilterResult; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.frequency.RsId; -import de.charite.compbio.exomiser.core.model.pathogenicity.CaddScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.MutationTasterScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import de.charite.compbio.exomiser.core.model.pathogenicity.SiftScore; -import de.charite.compbio.exomiser.core.prioritisers.PhivePriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriorityResult; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; -import de.charite.compbio.jannovar.pedigree.Genotype; - -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.List; - -import org.junit.After; -import org.junit.Rule; -import org.junit.Test; - -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.rules.TemporaryFolder; -import org.thymeleaf.TemplateEngine; -import org.thymeleaf.templateresolver.ClassLoaderTemplateResolver; -import org.thymeleaf.templateresolver.TemplateResolver; - -/** - * - * @author Jules Jacobsen - */ -public class HtmlResultsWriterTest { - - private HtmlResultsWriter instance; - - /** - * The temporary folder to write files to, automatically removed after tests - * finish. - */ - @Rule - public TemporaryFolder tmpFolder = new TemporaryFolder(); - - private static TemplateEngine templateEngine; - - private String testOutFilePrefix; - - private VariantEvaluation missenseVariantEvaluation; - private VariantEvaluation indelVariantEvaluation; - - private VariantEvaluation unAnnotatedVariantEvaluation1; - private VariantEvaluation unAnnotatedVariantEvaluation2; - - private Gene gene1; - private Gene gene2; - - @BeforeClass - public static void makeTemplateEngine() { - TemplateResolver templateResolver = new ClassLoaderTemplateResolver(); - templateResolver.setTemplateMode("HTML5"); - templateResolver.setPrefix("html/templates/"); - templateResolver.setSuffix(".html"); - templateResolver.setCacheable(true); - templateEngine = new TemplateEngine(); - templateEngine.setTemplateResolver(templateResolver); - } - - @Before - public void setUp() { - instance = new HtmlResultsWriter(templateEngine); - - TestVariantFactory varFactory = new TestVariantFactory(); - - missenseVariantEvaluation = varFactory.constructVariant(10, 123353297, "G", "C", Genotype.HETEROZYGOUS, 30, 0, 2.2); - missenseVariantEvaluation.setFrequencyData(new FrequencyData(new RsId(123456), new Frequency(0.01f, FrequencySource.THOUSAND_GENOMES))); - missenseVariantEvaluation.setPathogenicityData(new PathogenicityData(new PolyPhenScore(1f), new MutationTasterScore(1f), new SiftScore(0f), new CaddScore(1f))); - missenseVariantEvaluation.addFilterResult(new PassFilterResult(FilterType.FREQUENCY_FILTER)); - missenseVariantEvaluation.addFilterResult(new PassFilterResult(FilterType.VARIANT_EFFECT_FILTER)); - - indelVariantEvaluation = varFactory.constructVariant(7, 155604800, "C", "CTT", Genotype.HETEROZYGOUS, 30, 0, 1.0); - - gene1 = new Gene(missenseVariantEvaluation.getGeneSymbol(), missenseVariantEvaluation.getEntrezGeneId()); - gene1.addVariant(missenseVariantEvaluation); - - gene2 = new Gene(indelVariantEvaluation.getGeneSymbol(), indelVariantEvaluation.getEntrezGeneId()); - gene2.addVariant(indelVariantEvaluation); - - gene1.addPriorityResult(new PhivePriorityResult("MGI:12345", "Gene1", 0.99f)); - gene2.addPriorityResult(new PhivePriorityResult("MGI:54321", "Gene2", 0.98f)); - - OMIMPriorityResult gene1PriorityScore = new OMIMPriorityResult(); - gene1PriorityScore.addRow("OMIM:12345", "OMIM:67890", "Disease syndrome", 'D', 'D', 1f); - gene1.addPriorityResult(gene1PriorityScore); - gene2.addPriorityResult(new OMIMPriorityResult()); - - unAnnotatedVariantEvaluation1 = varFactory.constructVariant(5, 10, "C", "T", Genotype.HETEROZYGOUS, 30, 0, 1.0); - unAnnotatedVariantEvaluation2 = varFactory.constructVariant(5, 10, "C", "T", Genotype.HETEROZYGOUS, 30, 0, 1.0); - } - - @After - public void tearDown() { - Paths.get(testOutFilePrefix).toFile().delete(); - } - - private Analysis makeAnalysis(List genes, List variantEvaluations) { - SampleData sampleData = new SampleData(); - List sampleNames = new ArrayList<>(); - sampleNames.add("Slartibartfast"); - sampleData.setSampleNames(sampleNames); - sampleData.setNumberOfSamples(1); - sampleData.setGenes(genes); - sampleData.setVariantEvaluations(variantEvaluations); - - return new TestAnalysisBuilder().sampleData(sampleData).build(); - } - - @Test - public void testWriteTemplateWithEmptyData() throws Exception { - testOutFilePrefix = tmpFolder.newFile("testWrite.html").toString(); - - Analysis analysis = makeAnalysis(new ArrayList(), new ArrayList()); - - OutputSettings settings = new OutputSettingsBuilder().outputPrefix(testOutFilePrefix).build(); - - instance.writeFile(analysis, settings); - Path testOutFile = Paths.get(testOutFilePrefix); - assertTrue(testOutFile.toFile().exists()); - - } - - @Test - public void testWriteTemplateWithUnAnnotatedVariantData() throws Exception { - testOutFilePrefix = tmpFolder.newFile("testWriteTemplateWithUnAnnotatedVariantData.html").toString(); - List variantData = new ArrayList<>(); - variantData.add(unAnnotatedVariantEvaluation1); - variantData.add(unAnnotatedVariantEvaluation2); - Analysis analysis = makeAnalysis(new ArrayList(), variantData); - - OutputSettings settings = new OutputSettingsBuilder().outputPrefix(testOutFilePrefix).build(); - - instance.writeFile(analysis, settings); - - Path testOutFile = Paths.get(testOutFilePrefix); - assertTrue(testOutFile.toFile().exists()); - } - - @Test - public void testWriteTemplateWithUnAnnotatedVariantDataAndGenes() throws Exception { - testOutFilePrefix = tmpFolder.newFile("testWriteTemplateWithUnAnnotatedVariantDataAndGenes.html").toString(); - List variantData = new ArrayList<>(); - variantData.add(unAnnotatedVariantEvaluation1); - variantData.add(unAnnotatedVariantEvaluation2); - - List genes = new ArrayList<>(); - genes.add(gene1); - genes.add(gene2); - - Analysis analysis = makeAnalysis(genes, variantData); - - OutputSettings settings = new OutputSettingsBuilder().outputPrefix(testOutFilePrefix).build(); - - instance.writeFile(analysis, settings); - Path testOutFile = Paths.get(testOutFilePrefix); - assertTrue(testOutFile.toFile().exists()); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/OutputFormatTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/OutputFormatTest.java deleted file mode 100644 index 6da250900..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/OutputFormatTest.java +++ /dev/null @@ -1,55 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import static org.hamcrest.CoreMatchers.equalTo; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * Tests for {@link de.charite.compbio.exomiser.util.OutputFormat} - * - * @author Jules Jacobsen - */ -public class OutputFormatTest { - - public OutputFormatTest() { - } - - @Test - public void testValues() { - System.out.println("values"); - OutputFormat[] expResult = {OutputFormat.HTML, OutputFormat.VCF, OutputFormat.TSV_GENE, OutputFormat.TSV_VARIANT, OutputFormat.PHENOGRID}; - OutputFormat[] result = OutputFormat.values(); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testValueOf() { - String name = "VCF"; - OutputFormat expResult = OutputFormat.VCF; - OutputFormat result = OutputFormat.valueOf(name); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testGetFileExtension() { - OutputFormat instance = OutputFormat.HTML; - String expResult = "html"; - String result = instance.getFileExtension(); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testHasPhenogridJsonOutput() { - OutputFormat instance = OutputFormat.PHENOGRID; - String expResult = "phenogrid.json"; - String result = instance.getFileExtension(); - assertThat(result, equalTo(expResult)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/OutputSettingsImplTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/OutputSettingsImplTest.java deleted file mode 100644 index 4feafccbc..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/OutputSettingsImplTest.java +++ /dev/null @@ -1,143 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; -import java.util.EnumSet; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class OutputSettingsImplTest { - - private OutputSettingsImp instance; - private OutputSettingsBuilder builder; - - @Before - public void setUp() { - builder = new OutputSettingsBuilder(); - } - - private void buildInstance() { - instance = builder.build(); - } - - @Test - public void testThatDefaultOutputPassVariantsOptionIsFalse() { - buildInstance(); - assertThat(instance.outputPassVariantsOnly(), equalTo(false)); - } - - @Test - public void testThatBuilderProducesOutputPassVariantsOptionWhenSet() { - builder.outputPassVariantsOnly(true); - buildInstance(); - assertThat(instance.outputPassVariantsOnly(), equalTo(true)); - } - - /** - * Test of getNumberOfGenesToShow method, of class ExomiserSettings. - */ - @Test - public void testThatDefaultNumberOfGenesToShowIsZero() { - buildInstance(); - assertThat(instance.getNumberOfGenesToShow(), equalTo(0)); - } - - @Test - public void testThatBuilderCanSetNumberOfGenesToShow() { - int numGenes = 200; - builder.numberOfGenesToShow(numGenes); - buildInstance(); - assertThat(instance.getNumberOfGenesToShow(), equalTo(numGenes)); - } - - /** - * Test of getOutputPrefix method, of class ExomiserSettings. - */ - @Test - public void testThatBuilderProducesDefaultOutFileName() { - buildInstance(); - assertThat(instance.getOutputPrefix(), equalTo("")); - } - - @Test - public void testThatBuilderProducesSetOutFileName() { - String outputPrefix = "wibble"; - builder.outputPrefix(outputPrefix); - buildInstance(); - assertThat(instance.getOutputPrefix(), equalTo(outputPrefix)); - } - - /** - * Test of getOutputFormats method, of class ExomiserSettings. - */ - @Test - public void testThatDefaultOutputFormatIsHtml() { - buildInstance(); - assertThat(instance.getOutputFormats(), equalTo((Set) EnumSet.of(OutputFormat.HTML))); - } - - @Test - public void testThatBuilderProducesSetOutputFormat() { - Set outputFormats = EnumSet.of(OutputFormat.TSV_GENE); - builder.outputFormats(outputFormats); - buildInstance(); - assertThat(instance.getOutputFormats(), equalTo(outputFormats)); - } - - @Test - public void testHashCode() { - buildInstance(); - OutputSettingsImp other = new OutputSettingsBuilder().build(); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - - @Test - public void testEquals() { - buildInstance(); - OutputSettingsImp other = new OutputSettingsBuilder().build(); - assertThat(instance, equalTo(other)); - } - - @Test - public void testToString() { - buildInstance(); - System.out.println(instance); - assertThat(instance.toString().isEmpty(), is(false)); - } - - @Test - public void testCanBuildFromYaml() throws Exception { - buildInstance(); - ObjectMapper mapper = new ObjectMapper(new YAMLFactory()); - - OutputSettings createdFromYaml = mapper.readValue("outputPassVariantsOnly: false\n" - + "numGenes: 0\n" - + "outputPrefix: \n" - + "outputFormats: [HTML]", - OutputSettingsImp.class); - - assertThat(instance, equalTo(createdFromYaml)); - } - - @Test - public void testCanOutputAsYaml() throws Exception { - buildInstance(); - ObjectMapper mapper = new ObjectMapper(new YAMLFactory()); - String output = mapper.writeValueAsString(instance); - System.out.println(output); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/ResultsWriterFactoryTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/ResultsWriterFactoryTest.java deleted file mode 100644 index 61ebd8a84..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/ResultsWriterFactoryTest.java +++ /dev/null @@ -1,65 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import static org.hamcrest.CoreMatchers.instanceOf; -import static org.junit.Assert.*; - -import org.junit.Before; -import org.junit.Test; - -/** - * @author Jules Jacobsen - */ -public class ResultsWriterFactoryTest { - - private ResultsWriterFactory instance; - - public ResultsWriterFactoryTest() { - } - - @Before - public void setUp() { - instance = new ResultsWriterFactory(); - } - - @Test - public void testGetHtmlResultsWriter() { - OutputFormat outputFormat = OutputFormat.HTML; - ResultsWriter result = instance.getResultsWriter(outputFormat); - assertThat(result, instanceOf(HtmlResultsWriter.class)); - - } - - @Test - public void testGetTsvGeneResults() { - OutputFormat outputFormat = OutputFormat.TSV_GENE; - ResultsWriter result = instance.getResultsWriter(outputFormat); - assertThat(result, instanceOf(TsvGeneResultsWriter.class)); - } - - @Test - public void testGetTsvVariantResultsWriter() { - OutputFormat outputFormat = OutputFormat.TSV_VARIANT; - ResultsWriter result = instance.getResultsWriter(outputFormat); - assertThat(result, instanceOf(TsvVariantResultsWriter.class)); - } - - @Test - public void testGetVcfResultsWriter() { - OutputFormat outputFormat = OutputFormat.VCF; - ResultsWriter result = instance.getResultsWriter(outputFormat); - assertThat(result, instanceOf(VcfResultsWriter.class)); - } - - @Test - public void testGetPhenoGridResultsWriter() { - OutputFormat outputFormat = OutputFormat.PHENOGRID; - ResultsWriter result = instance.getResultsWriter(outputFormat); - assertThat(result, instanceOf(PhenogridWriter.class)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/ResultsWriterUtilsTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/ResultsWriterUtilsTest.java deleted file mode 100644 index 3e4c60a2b..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/ResultsWriterUtilsTest.java +++ /dev/null @@ -1,176 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.filters.FilterReport; -import de.charite.compbio.exomiser.core.filters.PassAllVariantEffectsFilter; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.List; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.notNullValue; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.Test; -import org.junit.runner.RunWith; -import org.mockito.Mock; -import org.mockito.Mockito; -import org.mockito.runners.MockitoJUnitRunner; - -/** - * - * @author Jules Jacobsen - */ -@RunWith(MockitoJUnitRunner.class) -public class ResultsWriterUtilsTest { - - OutputSettingsBuilder settingsBuilder; - - private static final String DEFAULT_OUTPUT_DIR = "results"; - private final Path vcfPath = Paths.get("wibble"); - - @Mock - Gene passedGeneOne; - @Mock - Gene passedGeneTwo; - @Mock - Gene failedGene; - - @Before - public void before() { - settingsBuilder = new OutputSettingsBuilder(); - - Mockito.when(passedGeneOne.passedFilters()).thenReturn(Boolean.TRUE); - Mockito.when(passedGeneTwo.passedFilters()).thenReturn(Boolean.TRUE); - Mockito.when(failedGene.passedFilters()).thenReturn(Boolean.FALSE); - } - - private List getGenes() { - List genes = new ArrayList<>(); - genes.add(passedGeneOne); - genes.add(passedGeneTwo); - genes.add(failedGene); - return genes; - } - - @Test - public void testThatSpecifiedTsvFileExtensionIsPresent() { - OutputFormat testedFormat = OutputFormat.TSV_GENE; - OutputSettings settings = settingsBuilder.build(); - String expResult = String.format("%s/wibble-exomiser-results.%s", DEFAULT_OUTPUT_DIR, testedFormat.getFileExtension()); - String result = ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), testedFormat); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testThatSpecifiedVcfFileExtensionIsPresent() { - OutputFormat testedFormat = OutputFormat.VCF; - OutputSettings settings = settingsBuilder.build(); - String expResult = String.format("%s/wibble-exomiser-results.%s", DEFAULT_OUTPUT_DIR, testedFormat.getFileExtension()); - String result = ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), testedFormat); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testThatSpecifiedOutputFormatDoesNotOverwriteGivenOutputPrefixFileExtension() { - OutputFormat testedFormat = OutputFormat.VCF; - String outputPrefix = "/user/jules/exomes/analysis/slartibartfast.xml"; - settingsBuilder.outputPrefix(outputPrefix); - OutputSettings settings = settingsBuilder.build(); - String expResult = String.format("%s.%s", outputPrefix, testedFormat.getFileExtension()); - String result = ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), testedFormat); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testDefaultOutputFormatIsNotDestroyedByIncorrectFileExtensionDetection() { - OutputFormat testedFormat = OutputFormat.HTML; - OutputSettings settings = settingsBuilder.build(); - String expResult = DEFAULT_OUTPUT_DIR + "/wibble-exomiser-results.html"; - String result = ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), testedFormat); - assertThat(result, equalTo(expResult)); - } - - @Test - public void testOutFileNameIsCombinationOfOutPrefixAndOutFormat() { - OutputFormat outFormat = OutputFormat.TSV_GENE; - String outFilePrefix = "user/subdir/geno/vcf/F0000009/F0000009.vcf"; - settingsBuilder.outputPrefix(outFilePrefix); - OutputSettings settings = settingsBuilder.build(); - assertThat(ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), outFormat), equalTo(outFilePrefix + "." + outFormat.getFileExtension())); - } - - @Test - public void canMakeEmptyVariantTypeCounterFromEmptyVariantEvaluations() { - List variantEvaluations = new ArrayList<>(); - List variantTypeCounters = ResultsWriterUtils.makeVariantEffectCounters(variantEvaluations); - assertThat(variantTypeCounters.isEmpty(), is(false)); - - VariantEffectCount firstVariantTypeCount = variantTypeCounters.get(0); - assertThat(firstVariantTypeCount.getVariantType(), notNullValue()); - assertThat(firstVariantTypeCount.getSampleVariantTypeCounts().isEmpty(), is(true)); - } - - @Test - public void canMakeFilterReportsFromAnalysis_returnsEmptyListWhenNoFiltersAdded(){ - Analysis analysis = new Analysis(); - - List results = ResultsWriterUtils.makeFilterReports(analysis); - - assertThat(results.isEmpty(), is(true)); - } - - @Test - public void canMakeFilterReportsFromAnalysis(){ - Analysis analysis = new Analysis(); - analysis.addStep(new PassAllVariantEffectsFilter()); - List results = ResultsWriterUtils.makeFilterReports(analysis); - - for (FilterReport result : results) { - System.out.println(result); - } - - assertThat(results.isEmpty(), is(false)); - } - - @Test - public void testMaxPassedGenesWhereMaxGenesIsZero() { - List allPassedGenes = new ArrayList<>(); - allPassedGenes.add(passedGeneOne); - allPassedGenes.add(passedGeneTwo); - assertThat(ResultsWriterUtils.getMaxPassedGenes(getGenes(), 0), equalTo(allPassedGenes)); - } - - @Test - public void testMaxPassedGenesWhereMaxGenesIsOne() { - List onePassed = new ArrayList<>(); - onePassed.add(passedGeneOne); - assertThat(ResultsWriterUtils.getMaxPassedGenes(getGenes(), 1), equalTo(onePassed)); - } - @Test - public void testMaxPassedGenesWhereMaxGenesIsGreaterThanInputSize() { - List allPassedGenes = new ArrayList<>(); - allPassedGenes.add(passedGeneOne); - allPassedGenes.add(passedGeneTwo); - assertThat(ResultsWriterUtils.getMaxPassedGenes(getGenes(), 100), equalTo(allPassedGenes)); - } - - @Test - public void testPassedGenesReturnsAllPassedGenes() { - List allPassedGenes = new ArrayList<>(); - allPassedGenes.add(passedGeneOne); - allPassedGenes.add(passedGeneTwo); - assertThat(ResultsWriterUtils.getPassedGenes(getGenes()), equalTo(allPassedGenes)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/TsvGeneResultsWriterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/TsvGeneResultsWriterTest.java deleted file mode 100644 index 2435a7b98..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/TsvGeneResultsWriterTest.java +++ /dev/null @@ -1,87 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.TestAnalysisBuilder; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; - -import java.nio.file.Paths; -import java.util.Arrays; -import java.util.EnumSet; - -import org.junit.Before; -import org.junit.Test; - -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; - -/** - * - * @author Jules Jacobsen - */ -public class TsvGeneResultsWriterTest { - - private Gene gene; - private static final String GENE_SYMBOL = "FGFR2"; - private static final int GENE_ID = 2263; - private TsvGeneResultsWriter instance; - private static final String HEADER = "#GENE_SYMBOL ENTREZ_GENE_ID " - + "EXOMISER_GENE_PHENO_SCORE EXOMISER_GENE_VARIANT_SCORE EXOMISER_GENE_COMBINED_SCORE " - + "HUMAN_PHENO_SCORE MOUSE_PHENO_SCORE FISH_PHENO_SCORE WALKER_SCORE " - + "PHIVE_ALL_SPECIES_SCORE OMIM_SCORE MATCHES_CANDIDATE_GENE HUMAN_PHENO_EVIDENCE MOUSE_PHENO_EVIDENCE FISH_PHENO_EVIDENCE HUMAN_PPI_EVIDENCE MOUSE_PPI_EVIDENCE FISH_PPI_EVIDENCE\n"; - - private static final String GENE_STRING = "FGFR2 2263 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0 \n"; - - private SampleData sampleData; - private Analysis analysis; - - @Before - public void setUp() { - instance = new TsvGeneResultsWriter(); - - gene = new Gene(GENE_SYMBOL, GENE_ID); - sampleData = new SampleData(); - sampleData.setGenes(Arrays.asList(gene)); - analysis = new TestAnalysisBuilder().sampleData(sampleData).build(); - } - - @Test - public void testWrite() { - OutputSettings settings = new OutputSettingsBuilder().outputPrefix("testWrite") - .outputFormats(EnumSet.of(OutputFormat.TSV_GENE)).build(); - instance.writeFile(analysis, settings); - assertTrue(Paths.get("testWrite.genes.tsv").toFile().exists()); - assertTrue(Paths.get("testWrite.genes.tsv").toFile().delete()); - } - - @Test - public void testWriteString() { - OutputSettings settings = new OutputSettingsBuilder().outputFormats( - EnumSet.of(OutputFormat.TSV_GENE)).build(); - String outString = instance.writeString(analysis, settings); - assertThat(outString, equalTo(HEADER + GENE_STRING)); - } - - @Test - public void testWriteStringStartsWithAHeaderLine() { - OutputSettings settings = new OutputSettingsBuilder().outputFormats( - EnumSet.of(OutputFormat.TSV_GENE)).build(); - String outString = instance.writeString(analysis, settings); - String[] lines = outString.split("\n"); - assertThat(lines[0] + "\n", equalTo(HEADER)); - } - - @Test - public void testMakeGeneLine() { - String result = instance.makeGeneLine(gene); - assertThat(result, equalTo(GENE_STRING)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/TsvVariantResultsWriterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/TsvVariantResultsWriterTest.java deleted file mode 100644 index d91aed38b..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/TsvVariantResultsWriterTest.java +++ /dev/null @@ -1,126 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.TestAnalysisBuilder; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.assertThat; -import static org.junit.Assert.assertTrue; - -import java.nio.file.Paths; -import java.util.EnumSet; - -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import org.junit.Before; -import org.junit.Test; - -import de.charite.compbio.exomiser.core.factories.TestVariantFactory; -import de.charite.compbio.exomiser.core.filters.FailFilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.filters.PassFilterResult; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; -import de.charite.compbio.jannovar.pedigree.Genotype; -import java.util.Arrays; - -/** - * - * @author Max Schubach - * @author Jules Jacobsen - */ -public class TsvVariantResultsWriterTest { - - private TsvVariantResultsWriter instance; - - private static final String VARIANT_DETAILS_HEADER = "#CHROM\tPOS\tREF\tALT\tQUAL\tFILTER\tGENOTYPE\tCOVERAGE\tFUNCTIONAL_CLASS\tHGVS\tEXOMISER_GENE\t"; - private static final String PATHOGENICITY_SCORES_HEADER = "CADD(>0.483)\tPOLYPHEN(>0.956|>0.446)\tMUTATIONTASTER(>0.94)\tSIFT(<0.06)\tREMM\t"; - private static final String FREQUENCY_DATA_HEADER = "DBSNP_ID\tMAX_FREQUENCY\tDBSNP_FREQUENCY\t" - + "EVS_EA_FREQUENCY\tEVS_AA_FREQUENCY\t" - + "EXAC_AFR_FREQ\tEXAC_AMR_FREQ\tEXAC_EAS_FREQ\tEXAC_FIN_FREQ\tEXAC_NFE_FREQ\tEXAC_SAS_FREQ\tEXAC_OTH_FREQ\t"; - private static final String EXOMISER_SCORES_HEADER = - "EXOMISER_VARIANT_SCORE\tEXOMISER_GENE_PHENO_SCORE\tEXOMISER_GENE_VARIANT_SCORE\tEXOMISER_GENE_COMBINED_SCORE\n"; - - private static final String HEADER = VARIANT_DETAILS_HEADER + PATHOGENICITY_SCORES_HEADER + FREQUENCY_DATA_HEADER + EXOMISER_SCORES_HEADER; - - private static final String PASS_VARIANT_DETAILS = "chr10\t123353298\tG\tC\t2.2\tPASS\t0/1\t0\tmissense_variant\tFGFR2:uc021pzz.1:exon2:c.34C>G:p.(Leu12Val)\tFGFR2"; - private static final String FAIL_VARIANT_DETAILS = "chr7\t155604801\tC\tCTT\t1.0\tTarget\t0/1\t0\tframeshift_variant\tSHH:uc003wmk.1:exon1:c.16_17insAA:p.(Arg6Lysfs*6)\tSHH"; - private static final String NO_PATH_SCORES = "\t.\t.\t.\t.\t."; - private static final String NO_FREQUENCY_DATA = "\t.\t0.0\t.\t.\t.\t.\t.\t.\t.\t.\t.\t."; - private static final String PASS_VARIANT_EXOMISER_SCORES = "\t1.0\t0.0\t0.0\t0.0\n"; - private static final String FAIL_VARIANT_EXOMISER_SCORES = "\t0.95\t0.0\t0.0\t0.0\n"; - - private static final String PASS_VARIANT_LINE = PASS_VARIANT_DETAILS + "\t.\t1.0\t.\t.\t." + NO_FREQUENCY_DATA + PASS_VARIANT_EXOMISER_SCORES; - private static final String FAIL_VARIANT_LINE = FAIL_VARIANT_DETAILS + NO_PATH_SCORES + NO_FREQUENCY_DATA + FAIL_VARIANT_EXOMISER_SCORES; - - private OutputSettingsBuilder settingsBuilder; - private Analysis analysis; - private SampleData sampleData; - private Gene gene; - private VariantEvaluation passVariant; - private VariantEvaluation failVariant; - - @Before - public void before() { - instance = new TsvVariantResultsWriter(); - settingsBuilder = new OutputSettingsBuilder().outputFormats(EnumSet.of(OutputFormat.TSV_VARIANT)); - - TestVariantFactory varFactory = new TestVariantFactory(); - makePassVariant(varFactory); - makeFailVariant(varFactory); - - gene = new Gene(passVariant.getGeneSymbol(), passVariant.getEntrezGeneId()); - gene.addVariant(passVariant); - gene.addVariant(failVariant); - - sampleData = new SampleData(); - sampleData.setGenes(Arrays.asList(gene)); - - analysis = new TestAnalysisBuilder().sampleData(sampleData).build(); - } - - private void makePassVariant(TestVariantFactory varFactory) { - passVariant = varFactory.constructVariant(10, 123353297, "G", "C", Genotype.HETEROZYGOUS, 30, 0, 2.2); - passVariant.addFilterResult(new PassFilterResult(FilterType.VARIANT_EFFECT_FILTER)); - passVariant.setPathogenicityData(new PathogenicityData(new PolyPhenScore(1f))); - } - - private void makeFailVariant(TestVariantFactory varFactory) { - failVariant = varFactory.constructVariant(7, 155604800, "C", "CTT", Genotype.HETEROZYGOUS, 30, 0, 1.0); - failVariant.addFilterResult(new FailFilterResult(FilterType.VARIANT_EFFECT_FILTER)); - } - - @Test - public void testWrite() { - OutputSettings settings = settingsBuilder.outputPrefix("testWrite").build(); - instance.writeFile(analysis, settings); - assertTrue(Paths.get("testWrite.variants.tsv").toFile().exists()); - assertTrue(Paths.get("testWrite.variants.tsv").toFile().delete()); - } - - @Test - public void testWriteStringContainsAllVariants() { - OutputSettings settings = settingsBuilder.build(); - String outString = instance.writeString(analysis, settings); - String expected = HEADER - + PASS_VARIANT_LINE - + FAIL_VARIANT_LINE; - assertThat(outString, equalTo(expected)); - } - - @Test - public void testWritePassVariantsOnlyStringContainsOnlyPassedVariants() { - OutputSettings settings = settingsBuilder.outputPassVariantsOnly(true).build(); - String outString = instance.writeString(analysis, settings); - String expected = HEADER + - PASS_VARIANT_LINE; - assertThat(outString, equalTo(expected)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/VariantEffectCountTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/VariantEffectCountTest.java deleted file mode 100644 index 45387e1af..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/VariantEffectCountTest.java +++ /dev/null @@ -1,58 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.jannovar.annotation.VariantEffect; - -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; - -import static org.hamcrest.CoreMatchers.equalTo; - -import org.junit.Before; -import org.junit.Test; - -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class VariantEffectCountTest { - - private VariantEffectCount instance; - - private VariantEffect effect; - private List counts; - - @Before - public void setUp() { - - effect = VariantEffect.MISSENSE_VARIANT; - - counts = new ArrayList<>(); - counts.addAll(Arrays.asList(1, 2, 3)); - - instance = new VariantEffectCount(effect, counts); - } - - @Test - public void testGetVariantType() { - assertThat(instance.getVariantType(), equalTo(effect)); - } - - @Test - public void testGetSampleVariantTypeCounts() { - assertThat(instance.getSampleVariantTypeCounts(), equalTo(counts)); - } - - @Test - public void testToString() { - assertThat(instance.toString(), equalTo("MISSENSE_VARIANT=[1, 2, 3]")); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/VcfResultsWriterTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/VcfResultsWriterTest.java deleted file mode 100644 index 424ab7b37..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/VcfResultsWriterTest.java +++ /dev/null @@ -1,303 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.core.writers; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.TestAnalysisBuilder; -import de.charite.compbio.exomiser.core.factories.TestFactory; -import de.charite.compbio.exomiser.core.factories.TestVariantFactory; -import de.charite.compbio.exomiser.core.factories.VariantFactory; -import de.charite.compbio.exomiser.core.filters.FailFilterResult; -import de.charite.compbio.exomiser.core.filters.FilterResult; -import de.charite.compbio.exomiser.core.filters.FilterType; -import de.charite.compbio.exomiser.core.filters.PassFilterResult; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicityData; -import de.charite.compbio.exomiser.core.model.pathogenicity.PolyPhenScore; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PhivePriorityResult; -import de.charite.compbio.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; -import de.charite.compbio.jannovar.annotation.VariantEffect; -import de.charite.compbio.jannovar.pedigree.Genotype; -import htsjdk.variant.vcf.VCFFileReader; -import org.junit.*; -import org.junit.rules.TemporaryFolder; -import org.junit.runner.RunWith; -import org.mockito.runners.MockitoJUnitRunner; - -import java.io.File; -import java.io.IOException; -import java.net.URISyntaxException; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.Arrays; -import java.util.EnumSet; -import java.util.List; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.MatcherAssert.assertThat; - -/** - * Tests for the {@link VcfResultsWriter} class. - * - * The {@link VcfResultsWriter} class needs a {@link VCFFileReader} for building its header. Thus, we base our output - * {@link VcfResultsWriter} on the minimal.vcf file from the test resources. - * - * @author Jules Jacobsen - * @author Manuel Holtgrewe - */ -@RunWith(MockitoJUnitRunner.class) -public class VcfResultsWriterTest { - - final static String EXPECTED_HEADER = "##fileformat=VCFv4.2\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##FILTER=\n" - + "##INFO=\n" - + "##INFO=\n" - + "##INFO=\n" - + "##INFO=\n" - + "##INFO=\n" - + "##INFO=\n" - + "##INFO=\n" - + "##INFO=\n" - + "##INFO=\n" - + "#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\tFORMAT\tsample\n"; - private static final String CHR10_FGFR2_PATHOGENIC_MISSENSE_VARIANT = "chr10\t123353298\t.\tG\tC\t2.20\tPASS\tEXOMISER_GENE=FGFR2;EXOMISER_GENE_COMBINED_SCORE=0.0;EXOMISER_GENE_PHENO_SCORE=0.0;EXOMISER_GENE_VARIANT_SCORE=0.0;EXOMISER_VARIANT_SCORE=1.0;RD=30\tGT:RD\t0/1:30\n"; - - private VcfResultsWriter instance; - - private static VCFFileReader reader; - - private final VariantFactory variantFactory = TestFactory.buildDefaultVariantFactory(); - - @Rule - public TemporaryFolder tmpFolder = new TemporaryFolder(); - - private Path outPath; - private OutputSettings settings; - private SampleData sampleData; - - private Analysis analysis; - /** VariantEvaluation objects used for testing (annotated ones). */ - private VariantEvaluation missenseVariantEvaluation; - private VariantEvaluation indelVariantEvaluation; - - /** VariantEvaluation objects used for testing (unannotated ones). */ - private VariantEvaluation unAnnotatedVariantEvaluation1; - private VariantEvaluation unAnnotatedVariantEvaluation2; - - private Gene gene1, gene2; - private FilterResult passTargetResult, failTargetResult, failFrequencyResult; - - @BeforeClass - public static void loadVCFHeader() throws URISyntaxException { - final String inputFilePath = VcfResultsWriterTest.class.getResource("/minimal.vcf").toURI().getPath(); - reader = new VCFFileReader(new File(inputFilePath), false); // no index required - } - - @Before - public void setUp() throws IOException { - outPath = tmpFolder.newFile().toPath(); - settings = new OutputSettingsBuilder() - .outputFormats(EnumSet.of(OutputFormat.VCF)) - .outputPrefix(outPath + "testWrite").build(); - - instance = new VcfResultsWriter(); - - setUpModel(); - } - - private void setUpModel() { - sampleData = new SampleData(); - sampleData.setVcfHeader(reader.getFileHeader()); - - analysis = new TestAnalysisBuilder().sampleData(sampleData).build(); - - TestVariantFactory varFactory = new TestVariantFactory(); - - passTargetResult = new PassFilterResult(FilterType.VARIANT_EFFECT_FILTER); - failTargetResult = new FailFilterResult(FilterType.VARIANT_EFFECT_FILTER); - failFrequencyResult = new FailFilterResult(FilterType.FREQUENCY_FILTER); - - missenseVariantEvaluation = varFactory.constructVariant(10, 123353297, "G", "C", Genotype.HETEROZYGOUS, 30, 0, 2.2); - missenseVariantEvaluation.setPathogenicityData(new PathogenicityData(new PolyPhenScore(1f))); - indelVariantEvaluation = varFactory.constructVariant(7, 155604800, "C", "CTT", Genotype.HETEROZYGOUS, 30, 0, 1.0); - - gene1 = new Gene(missenseVariantEvaluation.getGeneSymbol(), missenseVariantEvaluation.getEntrezGeneId()); - gene1.addVariant(missenseVariantEvaluation); - - gene2 = new Gene(indelVariantEvaluation.getGeneSymbol(), indelVariantEvaluation.getEntrezGeneId()); - gene2.addVariant(indelVariantEvaluation); - - gene1.addPriorityResult(new PhivePriorityResult("MGI:12345", "Gene1", 0.99f)); - gene2.addPriorityResult(new PhivePriorityResult("MGI:54321", "Gene2", 0.98f)); - - OMIMPriorityResult gene1PriorityScore = new OMIMPriorityResult(); - gene1PriorityScore.addRow("OMIM:12345", "OMIM:67890", "Disease syndrome", 'D', 'D', 1f); - gene1.addPriorityResult(gene1PriorityScore); - gene2.addPriorityResult(new OMIMPriorityResult()); - - unAnnotatedVariantEvaluation1 = new VariantEvaluation.VariantBuilder(5, 11, "AC", "AT").quality(1).build(); - unAnnotatedVariantEvaluation2 = new VariantEvaluation.VariantBuilder(5, 14, "T", "TG").quality(1).build(); - } - - /* test that the extended header is written out properly */ - @Test - public void testWriteHeaderFile() { - Assert.assertEquals(EXPECTED_HEADER, instance.writeString(analysis, settings)); - } - - /* test writing out unannotated variants */ - @Test - public void testWriteUnannotatedVariants() { - sampleData.setVariantEvaluations(Arrays.asList(unAnnotatedVariantEvaluation1, unAnnotatedVariantEvaluation2)); - - String vcf = instance.writeString(analysis, settings); - final String EXPECTED = EXPECTED_HEADER - + "chr5\t11\t.\tAC\tAT\t1\t.\tEXOMISER_WARNING=VARIANT_NOT_ANALYSED_NO_GENE_ANNOTATIONS\tGT\t0/1\n" - + "chr5\t14\t.\tT\tTG\t1\t.\tEXOMISER_WARNING=VARIANT_NOT_ANALYSED_NO_GENE_ANNOTATIONS\tGT\t0/1\n"; - Assert.assertEquals(EXPECTED, vcf); - } - - /* test writing out annotated variants in two genes */ - @Test - public void testWriteAnnotatedVariantsNoFiltersApplied() { - sampleData.setGenes(Arrays.asList(gene1, gene2)); - - String vcf = instance.writeString(analysis, settings); - final String EXPECTED = EXPECTED_HEADER - + "chr10\t123353298\t.\tG\tC\t2.20\t.\tEXOMISER_GENE=FGFR2;EXOMISER_GENE_COMBINED_SCORE=0.0;EXOMISER_GENE_PHENO_SCORE=0.0;EXOMISER_GENE_VARIANT_SCORE=0.0;EXOMISER_VARIANT_SCORE=1.0;RD=30\tGT:RD\t0/1:30\n" - + "chr7\t155604801\t.\tC\tCTT\t1\t.\tEXOMISER_GENE=SHH;EXOMISER_GENE_COMBINED_SCORE=0.0;EXOMISER_GENE_PHENO_SCORE=0.0;EXOMISER_GENE_VARIANT_SCORE=0.0;EXOMISER_VARIANT_SCORE=0.95;RD=30\tGT:RD\t0/1:30\n"; - Assert.assertEquals(EXPECTED, vcf); - } - - /* test writing out a variant PASSing all filters */ - @Test - public void testWritePassVariant() { - missenseVariantEvaluation.addFilterResult(passTargetResult); - sampleData.setGenes(Arrays.asList(gene1)); - - String vcf = instance.writeString(analysis, settings); - final String EXPECTED = EXPECTED_HEADER - + CHR10_FGFR2_PATHOGENIC_MISSENSE_VARIANT; - Assert.assertEquals(EXPECTED, vcf); - } - - /* test writing out a variant failing the target filter */ - @Test - public void testWriteFailTargetVariant() { - missenseVariantEvaluation.addFilterResult(failTargetResult); - sampleData.setGenes(Arrays.asList(gene1)); - - String vcf = instance.writeString(analysis, settings); - final String EXPECTED = EXPECTED_HEADER - + "chr10\t123353298\t.\tG\tC\t2.20\tTarget\tEXOMISER_GENE=FGFR2;EXOMISER_GENE_COMBINED_SCORE=0.0;EXOMISER_GENE_PHENO_SCORE=0.0;EXOMISER_GENE_VARIANT_SCORE=0.0;EXOMISER_VARIANT_SCORE=1.0;RD=30\tGT:RD\t0/1:30\n"; - Assert.assertEquals(EXPECTED, vcf); - } - - @Test - public void testWritePassVariantsOnlyContainsOnlyPassedVariantLine() { - missenseVariantEvaluation.addFilterResult(passTargetResult); - indelVariantEvaluation.addFilterResult(failTargetResult); - sampleData.setGenes(Arrays.asList(gene1, gene2)); - - OutputSettings outputPassVariantsOnlySettings = new OutputSettingsBuilder() - .outputFormats(EnumSet.of(OutputFormat.VCF)) - .outputPassVariantsOnly(true) - .outputPrefix(outPath + "testWrite").build(); - - String output = instance.writeString(analysis, outputPassVariantsOnlySettings); - String expected = EXPECTED_HEADER - + CHR10_FGFR2_PATHOGENIC_MISSENSE_VARIANT; - assertThat(output, equalTo(expected)); - } - - @Test - public void testWritePassVariantsWithNoPassingVariants() { - missenseVariantEvaluation.addFilterResult(failTargetResult); - indelVariantEvaluation.addFilterResult(failTargetResult); - sampleData.setGenes(Arrays.asList(gene1, gene2)); - - OutputSettings outputPassVariantsOnlySettings = new OutputSettingsBuilder() - .outputFormats(EnumSet.of(OutputFormat.VCF)) - .outputPassVariantsOnly(true) - .outputPrefix(outPath + "testWrite").build(); - - String output = instance.writeString(analysis, outputPassVariantsOnlySettings); - assertThat(output, equalTo(EXPECTED_HEADER)); - } - - @Test - public void testAlternativeAllelesAreWrittenOnSuccessiveLines() { - TestVariantFactory varFactory = new TestVariantFactory(); - VariantEvaluation alt1 = varFactory.constructVariant(1, 120612040, "T", "TCCGCCG", Genotype.HETEROZYGOUS, 30, 0, 258.62); - VariantEvaluation alt2 = varFactory.constructVariant(1, 120612040, "T", "TCCTCCGCCG", Genotype.HOMOZYGOUS_ALT, 30, 1, 258.62); - Gene gene = new Gene("TEST", 12345); - gene.addVariant(alt1); - gene.addVariant(alt2); - - sampleData.setGenes(Arrays.asList(gene)); - String output = instance.writeString(analysis, settings); - System.out.println(output); - String expected = EXPECTED_HEADER - + "chr1\t120612041\t.\tT\tTCCGCCG\t258.62\t.\tEXOMISER_GENE=TEST;EXOMISER_GENE_COMBINED_SCORE=0.0;EXOMISER_GENE_PHENO_SCORE=0.0;EXOMISER_GENE_VARIANT_SCORE=0.0;EXOMISER_VARIANT_SCORE=0.0;RD=30\tGT:RD\t0/1:30\n" - + "chr1\t120612041\t.\tT\tTCCTCCGCCG\t258.62\t.\tEXOMISER_GENE=TEST;EXOMISER_GENE_COMBINED_SCORE=0.0;EXOMISER_GENE_PHENO_SCORE=0.0;EXOMISER_GENE_VARIANT_SCORE=0.0;EXOMISER_VARIANT_SCORE=0.0;RD=30\tGT:RD\t1/1:30\n"; - assertThat(output, equalTo(expected)); - } - - @Test - public void testHomozygousAltAlleleOutputVcfContainsConcatenatedVariantScoresOnOneLine() { - Path vcfPath = Paths.get("src/test/resources/multiAlleleGenotypes.vcf"); - List variants = variantFactory.createVariantEvaluations(vcfPath); - variants.forEach(System.out::println); - // 1/2 HETEROZYGOUS_ALT - needs to be written back out as a single line - //TODO: Check that all alleles are analysed - i.e. 0/1, 1/1, 1/2, 0/2 and 2/2 are always represented - VariantEvaluation altAlleleOne = variants.get(3); - //change the variant effect from MISSENSE so that the score is different and the order can be tested on the output line - //variant score is 0.85 - altAlleleOne.setVariantEffect(VariantEffect.COMPLEX_SUBSTITUTION); - - //variant score is 0.6 - VariantEvaluation altAlleleTwo = variants.get(4); - - Gene gene = new Gene(altAlleleOne.getGeneSymbol(), altAlleleOne.getEntrezGeneId()); - gene.addVariant(altAlleleOne); - gene.addVariant(altAlleleTwo); - - sampleData.setGenes(Arrays.asList(gene)); - String output = instance.writeString(analysis, settings); - System.out.println(output); - //expected should have concatenated variant score for multi-allele line: EXOMISER_VARIANT_SCORE=0.85,0.6 - String expected = EXPECTED_HEADER - + "10\t123256215\t.\tT\tG,A\t100\t.\tEXOMISER_GENE=FGFR2;EXOMISER_GENE_COMBINED_SCORE=0.0;EXOMISER_GENE_PHENO_SCORE=0.0;EXOMISER_GENE_VARIANT_SCORE=0.0;EXOMISER_VARIANT_SCORE=0.85,0.6;GENE=FGFR2;INHERITANCE=AD;MIM=101600\tGT\t1/2\n"; - assertThat(output, equalTo(expected)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridAdaptorTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridAdaptorTest.java deleted file mode 100644 index 721c37595..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridAdaptorTest.java +++ /dev/null @@ -1,240 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import de.charite.compbio.exomiser.core.model.DiseaseModel; -import de.charite.compbio.exomiser.core.model.GeneModel; -import de.charite.compbio.exomiser.core.model.Model; -import de.charite.compbio.exomiser.core.model.Organism; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import de.charite.compbio.exomiser.core.prioritisers.HiPhivePriorityResult; -import java.lang.reflect.Array; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.Collections; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Set; -import org.hamcrest.CoreMatchers; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.notNullValue; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PhenoGridAdaptorTest { - - private PhenoGridAdaptor instance; - - private List hiPhiveResults; - private final String phenoGridId = "hiPhive specified phenotypes"; - - private DiseaseModel diseaseModel; - private PhenotypeMatch diseasePhenotypeMatch; - private PhenoGridMatchScore diseaseScore; - private final PhenoGridMatchTaxon diseaseTaxon = PhenoGridAdaptor.HUMAN_TAXON; - private PhenoGridMatch diseasePhenoGridMatch; - - private GeneModel mouseModel; - private PhenotypeMatch mousePhenotypeMatch; - private PhenoGridMatchScore mouseScore; - private final PhenoGridMatchTaxon mouseTaxon = PhenoGridAdaptor.MOUSE_TAXON; - private PhenoGridMatch mousePhenoGridMatch; - - private GeneModel fishModel; - private PhenotypeMatch fishPhenotypeMatch; - private PhenoGridMatchScore fishScore; - private final PhenoGridMatchTaxon fishTaxon = PhenoGridAdaptor.FISH_TAXON; - private PhenoGridMatch fishPhenoGridMatch; - - private PhenotypeTerm queryTerm; - private List queryPhenotypeTerms; - private Set queryPhenotypeIds; - - private final int allModelEntrezGeneId = 12345; - private final String allModelGeneSymbol = "ALL1"; - private final double allModelScore = 0.8d; - private final double allModelWalkerScore = 0.6d; - private HiPhivePriorityResult allModelsHiPhiveResult; - - private final int onlyDiseaseEntrezGeneId = 23456; - private final String onlyDiseaseGeneSymbol = "DISEASE1"; - private final double onlyDiseaseModelScore = 0.7d; - private final double onlyDiseaseModelWalkerScore = 0.5d; - private HiPhivePriorityResult onlyDiseaseModelHiPhiveResult; - - - @Before - public void setUp() { - setUpQueryTerms(); - setUpPhenotypeMatches(); - setUpModels(); - setUpHiPhiveResults(); - instance = new PhenoGridAdaptor(); - } - - private void setUpQueryTerms() { - queryTerm = new PhenotypeTerm("HP:0001363", "Craniosynostosis", 5.0); - queryPhenotypeTerms = new ArrayList<>(); - queryPhenotypeTerms.add(queryTerm); - - queryPhenotypeIds = new LinkedHashSet<>(); - queryPhenotypeIds.add(queryTerm.getId()); - - } - - private void setUpPhenotypeMatches() { - diseasePhenotypeMatch = makeDiseasePhenotypeMatch(); - mousePhenotypeMatch = makeMousePhenotypeMatch(); - fishPhenotypeMatch = makeFishPhenotypeMatch(); - } - - private PhenotypeMatch makeDiseasePhenotypeMatch() { - PhenotypeTerm craniosynostosis = new PhenotypeTerm("HP:0001363", "Craniosynostosis", 5.0); - PhenotypeMatch diseaseCraniosynostosisMatch = new PhenotypeMatch(craniosynostosis, craniosynostosis, 1.0, 3.0, craniosynostosis); - return diseaseCraniosynostosisMatch; - } - - private PhenotypeMatch makeMousePhenotypeMatch() { - PhenotypeTerm craniosynostosis = new PhenotypeTerm("HP:0001363", "Craniosynostosis", 5.0); - PhenotypeTerm prematureSutureClosure = new PhenotypeTerm("MP:0000081", "premature suture closure ", 4.0); - PhenotypeMatch mouseCraniosyntosisMatch = new PhenotypeMatch(craniosynostosis, prematureSutureClosure, 0.5, 2.0, prematureSutureClosure); - return mouseCraniosyntosisMatch; - } - - private PhenotypeMatch makeFishPhenotypeMatch() { - PhenotypeTerm craniosynostosis = new PhenotypeTerm("HP:0001363", "Craniosynostosis", 5.0); - PhenotypeTerm increasedBoneMineralisation = new PhenotypeTerm("ZP:0006781", "abnormal(ly) increased process quality bone mineralization", 5.0); - PhenotypeTerm abnormalBoneOssification = new PhenotypeTerm("MP:0008271", "abnormal bone ossification", 4.6); - PhenotypeMatch fishCraniosyntosisMatch = new PhenotypeMatch(craniosynostosis, increasedBoneMineralisation, 0.2, 1.0, abnormalBoneOssification); - return fishCraniosyntosisMatch; - } - - private void setUpModels() { - diseaseModel = new DiseaseModel("OMIM:00000", Organism.HUMAN, allModelEntrezGeneId, allModelGeneSymbol, "OMIM:00000", "Rare disease", new ArrayList()); - diseaseModel.addMatchIfAbsentOrBetterThanCurrent(diseasePhenotypeMatch); - diseaseModel.setScore(0.99); - diseaseScore = new PhenoGridMatchScore("hiPhive", 99, 0); - - mouseModel = new GeneModel("1_12345", Organism.MOUSE, allModelEntrezGeneId, allModelGeneSymbol, "MGI:00000", "All1", new ArrayList()); - mouseModel.addMatchIfAbsentOrBetterThanCurrent(mousePhenotypeMatch); - mouseModel.setScore(0.88); - mouseScore = new PhenoGridMatchScore("hiPhive", 88, 0); - - fishModel = new GeneModel("2_12345", Organism.FISH, allModelEntrezGeneId, allModelGeneSymbol, "ZDB-GENE-000000-0", "all1", new ArrayList()); - fishModel.addMatchIfAbsentOrBetterThanCurrent(fishPhenotypeMatch); - fishModel.setScore(0.50); - fishScore = new PhenoGridMatchScore("hiPhive", 50, 0); - } - - private void setUpHiPhiveResults() { - List allModels = new ArrayList<>(); - allModels.add(diseaseModel); - allModels.add(mouseModel); - allModels.add(fishModel); - - allModelsHiPhiveResult = new HiPhivePriorityResult(phenoGridId, allModelScore, queryPhenotypeTerms, allModels, new ArrayList(), allModelWalkerScore, false); - - List models = new ArrayList<>(); - models.add(diseaseModel); - - onlyDiseaseModelHiPhiveResult = new HiPhivePriorityResult(phenoGridId, onlyDiseaseModelScore, queryPhenotypeTerms, models, new ArrayList(), onlyDiseaseModelWalkerScore, false); - - } - - @Test - public void testPhenoGridFromEmptyHiPhiveResults() { - hiPhiveResults = Collections.emptyList(); - PhenoGrid output = instance.makePhenoGridFromHiPhiveResults(phenoGridId, hiPhiveResults); - assertThat(output, notNullValue()); - PhenoGridQueryTerms queryTerms = output.getPhenoGridQueryTerms(); - assertThat(queryTerms, notNullValue()); - assertThat(queryTerms.getId(), equalTo(phenoGridId)); - assertThat(queryTerms.getPhenotypeIds().isEmpty(), is(true)); - assertThat(output.getPhenoGridMatchGroups().isEmpty(), is(true)); - } - - @Test - public void testDiseaseOnlyPhenoGridMatch() { - hiPhiveResults = new ArrayList<>(); - hiPhiveResults.add(onlyDiseaseModelHiPhiveResult); - PhenoGrid output = instance.makePhenoGridFromHiPhiveResults(phenoGridId, hiPhiveResults); - testOutputHeader(output); - - List gridMatchGroups = output.getPhenoGridMatchGroups(); - testHasExpectedNumberOfOrganismsUsedForPhenotypeComparison(1, gridMatchGroups); - testExpectedTaxonomicOrderOfPhenoGridMatchGroups(gridMatchGroups, diseaseTaxon); - testMatchesAreInDescendingScoreOrder(gridMatchGroups, diseaseScore); - testPhenoGridMatchGroupCommonValues(gridMatchGroups); - - } - - @Test - public void testPhenoGridWithHiPhiveResultContainingAllModelMatchesOneMatchGroupPerOrganism() { - hiPhiveResults = new ArrayList<>(); - hiPhiveResults.add(allModelsHiPhiveResult); - PhenoGrid output = instance.makePhenoGridFromHiPhiveResults(phenoGridId, hiPhiveResults); - testOutputHeader(output); - - List gridMatchGroups = output.getPhenoGridMatchGroups(); - testHasExpectedNumberOfOrganismsUsedForPhenotypeComparison(3, gridMatchGroups); - testExpectedTaxonomicOrderOfPhenoGridMatchGroups(gridMatchGroups, diseaseTaxon, mouseTaxon, fishTaxon); - testMatchesAreInDescendingScoreOrder(gridMatchGroups, diseaseScore, mouseScore, fishScore); - testPhenoGridMatchGroupCommonValues(gridMatchGroups); - } - - private void testHasExpectedNumberOfOrganismsUsedForPhenotypeComparison(int numberOfOrganismsUsedForPhenotypeComparison, List gridMatchGroups) { - assertThat(gridMatchGroups.size(), equalTo(numberOfOrganismsUsedForPhenotypeComparison)); - } - - private void testOutputHeader(PhenoGrid output) { - assertThat(output, notNullValue()); - PhenoGridQueryTerms queryTerms = output.getPhenoGridQueryTerms(); - assertThat(queryTerms, notNullValue()); - assertThat(queryTerms.getId(), equalTo(phenoGridId)); - assertThat(queryTerms.getPhenotypeIds(), equalTo(queryPhenotypeIds)); - } - - private void testPhenoGridMatchGroupCommonValues(List gridMatchGroups) { - for (PhenoGridMatchGroup gridMatchGroup : gridMatchGroups) { - assertThat(gridMatchGroup.getQueryPhenotypeTermIds(), equalTo(queryPhenotypeIds)); - assertThat(gridMatchGroup.getCutOff(), equalTo(10)); - List matches = gridMatchGroup.getMatches(); - assertThat(matches.size(), equalTo(1)); - } - } - - private void testMatchesAreInDescendingScoreOrder(List gridMatchGroups, PhenoGridMatchScore... matchScores) { - List expectedScores = Arrays.asList(matchScores); - - List phenogridScores = new ArrayList<>(); - for (PhenoGridMatchGroup gridMatchGroup : gridMatchGroups) { - for (PhenoGridMatch match : gridMatchGroup.getMatches()) { - phenogridScores.add(match.getScore()); - } - } - assertThat(phenogridScores, equalTo(expectedScores)); - } - - private void testExpectedTaxonomicOrderOfPhenoGridMatchGroups(List gridMatchGroups, PhenoGridMatchTaxon... taxons) { - Set expectedTaxonomicOrderOfMatchGroups = new LinkedHashSet<>(Arrays.asList(taxons)); - Set actualTaxonomicOrderOfMatchGroups = new LinkedHashSet<>(); - - for (PhenoGridMatchGroup phenoGridMatchGroup : gridMatchGroups) { - for (PhenoGridMatch match : phenoGridMatchGroup.getMatches()) { - actualTaxonomicOrderOfMatchGroups.add(match.getTaxon()); - } - } - assertThat(actualTaxonomicOrderOfMatchGroups, equalTo(expectedTaxonomicOrderOfMatchGroups)); - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchGroupTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchGroupTest.java deleted file mode 100644 index 2355981bf..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchGroupTest.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.SerializationFeature; -import java.util.Collection; -import java.util.Collections; -import java.util.List; -import java.util.Set; -import java.util.TreeSet; -import static org.hamcrest.CoreMatchers.equalTo; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PhenoGridMatchGroupTest { - - private PhenoGridMatchGroup instance; - - private List matches; - private List queryPhenotypeTermIds; - - //what's this cutoff for? the IC? - private static final int CUTOFF = 10; - - private final TestPhenoGridObjectCache matchCache = TestPhenoGridObjectCache.getInstance(); - - @Before - public void setUp() { - matches = matchCache.getPhenoGridMatches(); - queryPhenotypeTermIds = matchCache.getQueryPhenotypeTermIds(); - - instance = new PhenoGridMatchGroup(matches, queryPhenotypeTermIds); - } - - @Test - public void testGetMatches() { - assertThat(instance.getMatches(), equalTo(matches)); - } - - @Test - public void testGetQueryPhenotypeTermIds() { - Set expectedqueryTermIds = new TreeSet<>(queryPhenotypeTermIds); - assertThat(instance.getQueryPhenotypeTermIds(), equalTo(expectedqueryTermIds)); - } - - @Test - public void testJsonOutput() { - ObjectMapper mapper = new ObjectMapper(); - mapper.configure(SerializationFeature.INDENT_OUTPUT, true); - mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); - try { - String jsonString = mapper.writeValueAsString(instance); - System.out.println(jsonString); - } catch (JsonProcessingException ex) { - System.out.println(ex); - } - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTaxonTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTaxonTest.java deleted file mode 100644 index 1d1de98f6..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTaxonTest.java +++ /dev/null @@ -1,72 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import org.hamcrest.CoreMatchers; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.not; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PhenoGridMatchTaxonTest { - - private PhenoGridMatchTaxon instance; - - private String id; - private String label; - - @Before - public void setUp() { - id = "9606"; - label = "Homo sapiens"; - instance = new PhenoGridMatchTaxon(id, label); - } - - @Test - public void testGetId() { - assertThat(instance.getId(), equalTo(id)); - } - - @Test - public void testGetLabel() { - assertThat(instance.getLabel(), equalTo(label)); - } - - @Test - public void testHashCode() { - PhenoGridMatchTaxon other = new PhenoGridMatchTaxon(id, label); - assertThat(instance.hashCode(), equalTo(other.hashCode())); - } - - @Test - public void testEquals() { - PhenoGridMatchTaxon other = new PhenoGridMatchTaxon(id, label); - assertThat(instance, equalTo(other)); - } - - @Test - public void testNotEqualsOther() { - PhenoGridMatchTaxon other = new PhenoGridMatchTaxon("10090", "Mus musculus"); - assertThat(instance, not(equalTo(other))); - } - - @Test - public void testNotEqualsNull() { - assertThat(instance, not(equalTo(null))); - } - - @Test - public void testNotEqualsOtherClass() { - String other = "Homo sapiens"; - assertThat(instance.equals(other), is(false)); - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTest.java deleted file mode 100644 index 5607fca01..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridMatchTest.java +++ /dev/null @@ -1,103 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.MapperFeature; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.SerializationFeature; -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.ArrayList; -import java.util.LinkedHashSet; -import java.util.List; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PhenoGridMatchTest { - - private PhenoGridMatch instance; - - private final String id = "OMIM:100000"; - private final String label = "Gruffalo Syndrome"; - private final String type = "disease"; - - private List phenotypeMatches; - private PhenoGridMatchScore score; - private PhenoGridMatchTaxon taxon; - - private final TestPhenoGridObjectCache matchCache = TestPhenoGridObjectCache.getInstance(); - - @Before - public void setUp() { - phenotypeMatches = matchCache.getPhenotypeMatches(); - - score = new PhenoGridMatchScore("hiPhive", 99, 0); - taxon = new PhenoGridMatchTaxon("NCBITaxon:10090", "Gruff gruffulus"); - - instance = new PhenoGridMatch(id, label, type, phenotypeMatches, score, taxon); - } - - @Test - public void testGetId() { - assertThat(instance.getId(), equalTo(id)); - } - - @Test - public void testGetLabel() { - assertThat(instance.getLabel(), equalTo(label)); - } - - @Test - public void testGetType() { - assertThat(instance.getType(), equalTo(type)); - } - - @Test - public void getPhenotypeMatches() { - assertThat(instance.getMatches(), equalTo(phenotypeMatches)); - } - - @Test - public void getScore() { - assertThat(instance.getScore(), equalTo(score)); - } - - @Test - public void getTaxon() { - assertThat(instance.getTaxon(), equalTo(taxon)); - } - - @Test - public void testGetQueryTermIds() { - Set queryTermIds = new LinkedHashSet(); - for (PhenotypeMatch phenotypeMatch : phenotypeMatches) { - PhenotypeTerm queryPhenotype = phenotypeMatch.getQueryPhenotype(); - queryTermIds.add(queryPhenotype.getId()); - } - assertThat(instance.getQueryTermIds(), equalTo(queryTermIds)); - } - - @Test - public void testJsonOutput() { - ObjectMapper mapper = new ObjectMapper(); - mapper.configure(SerializationFeature.INDENT_OUTPUT, true); - mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); - try { - String jsonString = mapper.writeValueAsString(instance); - System.out.println(jsonString); - } catch (JsonProcessingException ex) { - System.out.println(ex); - } - } -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridTest.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridTest.java deleted file mode 100644 index 727055fe6..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/PhenoGridTest.java +++ /dev/null @@ -1,65 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.SerializationFeature; -import java.util.Arrays; -import java.util.List; -import java.util.Set; -import java.util.TreeSet; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class PhenoGridTest { - - private PhenoGrid instance; - - private PhenoGridQueryTerms queryTerms; - private List phenoGridMatchGroups; - - private final TestPhenoGridObjectCache testObjectCache = TestPhenoGridObjectCache.getInstance(); - - @Before - public void setUp() { - String id = "hiPhive specified phenotypes"; - Set queryTermIds= new TreeSet<>(); - queryTermIds.addAll(Arrays.asList("GRUF:111", "GRUF:222", "GRUF:333", "GRUF:444")); - - phenoGridMatchGroups = testObjectCache.getPhenoGridMatchGroups(); - - queryTerms = new PhenoGridQueryTerms(id, queryTermIds); - instance = new PhenoGrid(queryTerms, phenoGridMatchGroups); - } - - @Test - public void testGetPhenoGridQueryTerms() { - } - - @Test - public void testGetPhenoGridMatchGroups() { - } - - @Test - public void testJsonOutput() { - ObjectMapper mapper = new ObjectMapper(); - mapper.configure(SerializationFeature.INDENT_OUTPUT, true); - mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); - try { - String jsonString = mapper.writeValueAsString(instance); - System.out.println(jsonString); - } catch (JsonProcessingException ex) { - System.out.println(ex); - } - } - -} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/TestPhenoGridObjectCache.java b/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/TestPhenoGridObjectCache.java deleted file mode 100644 index 2cb559f04..000000000 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/writers/phenogrid/TestPhenoGridObjectCache.java +++ /dev/null @@ -1,124 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.core.writers.phenogrid; - -import de.charite.compbio.exomiser.core.model.PhenotypeMatch; -import de.charite.compbio.exomiser.core.model.PhenotypeTerm; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.List; - -/** - * A cache for providing pre-built objects for use in the PhenoGrid tests. - * - * @author Jules Jacobsen - */ -public class TestPhenoGridObjectCache { - - private static TestPhenoGridObjectCache instance; - - private final List queryPhenotypeTermIds; - private final List phenotypeMatches; - private final List phenoGridMatches; - private final List phenoGridMatchGroups; - - public static TestPhenoGridObjectCache getInstance() { - if (instance == null) { - instance = new TestPhenoGridObjectCache(); - } - return instance; - } - - private TestPhenoGridObjectCache() { - queryPhenotypeTermIds = Arrays.asList("GRUF:111", "GRUF:222", "GRUF:333", "GRUF:444"); - phenotypeMatches = new ArrayList<>(); - phenoGridMatches = new ArrayList<>(); - phenoGridMatchGroups = new ArrayList<>(); - - - PhenotypeMatch kneeMatch = makeKnobblyKneePhenotypeMatch(); - phenotypeMatches.add(kneeMatch); - - PhenotypeMatch prickleMatch = makePurplePricklesPhenotypeMatch(); - phenotypeMatches.add(prickleMatch); - - PhenotypeMatch tongueMatch = makeMonsterousTonguePhenotypeMatch(); - phenotypeMatches.add(tongueMatch); - - PhenotypeMatch noseMatch = makeNosePhenotypeMatch(); - phenotypeMatches.add(noseMatch); - - PhenoGridMatchTaxon gruffaloTaxon = new PhenoGridMatchTaxon("NCBITaxon:10090", "Gruff gruffulus"); - - PhenoGridMatchScore bestScore = new PhenoGridMatchScore("hiPhive", 99, 0); - PhenoGridMatch bestMatch = new PhenoGridMatch("OMIM:100000", "Gruffalo Syndrome", "disease", Arrays.asList(kneeMatch, prickleMatch, tongueMatch, noseMatch), bestScore, gruffaloTaxon); - phenoGridMatches.add(bestMatch); - - PhenoGridMatchScore goodScore = new PhenoGridMatchScore("hiPhive", 90, 1); - PhenoGridMatch goodMatch = new PhenoGridMatch("OMIM:999999", "Knobbly knees and prickly back with tongue abnormality", "disease", Arrays.asList(kneeMatch, prickleMatch, tongueMatch), goodScore, gruffaloTaxon); - phenoGridMatches.add(goodMatch); - - PhenoGridMatchTaxon dragonTaxon = new PhenoGridMatchTaxon("NCBITaxon:35670", "Draco draco"); - PhenoGridMatchScore badScore = new PhenoGridMatchScore("hiPhive", 50, 3); - PhenoGridMatch badMatch = new PhenoGridMatch("WYRMBASE:999999", "Smaug1", "gene", Arrays.asList(tongueMatch), badScore, dragonTaxon); - - - PhenoGridMatchGroup diseaseMatchGroup = new PhenoGridMatchGroup(phenoGridMatches, queryPhenotypeTermIds); - phenoGridMatchGroups.add(diseaseMatchGroup); - PhenoGridMatchGroup geneMatchGroup = new PhenoGridMatchGroup(Arrays.asList(badMatch), queryPhenotypeTermIds); - phenoGridMatchGroups.add(geneMatchGroup); - - } - - private PhenotypeMatch makeNosePhenotypeMatch() { - PhenotypeTerm poisonouslyWartyNose = new PhenotypeTerm("GRUF:444", "Poisonously warty nose", 4.0); - PhenotypeTerm hideouslyWartyNose = new PhenotypeTerm("GRUF:443", "Hideously warty nose", 4.0); - PhenotypeTerm wartyNose = new PhenotypeTerm("GRUF:440", "Warty nose", 2.0); - PhenotypeMatch noseMatch = new PhenotypeMatch(poisonouslyWartyNose, hideouslyWartyNose, 0.85, 2.0, wartyNose); - return noseMatch; - } - - private PhenotypeMatch makeMonsterousTonguePhenotypeMatch() { - PhenotypeTerm blackTongue = new PhenotypeTerm("GRUF:333", "Black tongue", 5.0); - PhenotypeTerm forkedTongue = new PhenotypeTerm("GRUF:124", "Forked tongue", 5.0); - PhenotypeTerm abnormalTongue = new PhenotypeTerm("GRUF:120", "Abnormal tongue", 3.0); - PhenotypeMatch tongueMatch = new PhenotypeMatch(blackTongue, forkedTongue, 0.9, 3.0, abnormalTongue); - return tongueMatch; - } - - private PhenotypeMatch makePurplePricklesPhenotypeMatch() { - PhenotypeTerm purplePrickles = new PhenotypeTerm("GRUF:111", "Purple prickles", 4.0); - PhenotypeTerm redPrickles = new PhenotypeTerm("GRUF:112", "Red prickles", 4.0); - PhenotypeTerm colouredPrickles = new PhenotypeTerm("GRUF:110", "Coloured prickles", 2.0); - PhenotypeMatch prickleMatch = new PhenotypeMatch(purplePrickles, redPrickles, 0.7, 3.0, colouredPrickles); - return prickleMatch; - } - - private PhenotypeMatch makeKnobblyKneePhenotypeMatch() { - PhenotypeTerm knobblyKnee = new PhenotypeTerm("GRUF:222", "Knobbly knees", 5.0); - PhenotypeTerm wobblyKnee = new PhenotypeTerm("GRUF:224", "Wobbly knees", 5.0); - PhenotypeTerm unstableKnee = new PhenotypeTerm("GRUF:220", "Unstable knees", 3.0); - PhenotypeMatch kneeMatch = new PhenotypeMatch(knobblyKnee, wobblyKnee, 0.9, 3.0, unstableKnee); - return kneeMatch; - } - - public List getQueryPhenotypeTermIds() { - return queryPhenotypeTermIds; - } - - public List getPhenotypeMatches() { - return phenotypeMatches; - } - - public List getPhenoGridMatches() { - return phenoGridMatches; - } - - List getPhenoGridMatchGroups() { - return phenoGridMatchGroups; - } - -} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/ExomiserTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/ExomiserTest.java new file mode 100644 index 000000000..17b3a6332 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/ExomiserTest.java @@ -0,0 +1,94 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.*; +import org.monarchinitiative.exomiser.core.genome.TestFactory; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.genome.VariantDataServiceStub; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactory; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactoryImpl; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; + +import java.nio.file.Path; +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.notNullValue; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class ExomiserTest { + + private static final Path VCF_PATH = Paths.get("src/test/resources/smallTest.vcf"); + + private final VariantDataService stubDataService = new VariantDataServiceStub(); + private final PriorityFactory priorityFactory = new PriorityFactoryImpl(TestPriorityServiceFactory.TEST_SERVICE, null, null); + + private final AnalysisFactory analysisFactory = new AnalysisFactory(TestFactory.buildDefaultGeneFactory(), TestFactory + .buildDefaultVariantFactory(), priorityFactory, stubDataService); + //AnalysisFactory is only ever used here, but it provides a clean interface to the Analysis module + private Exomiser instance = new Exomiser(analysisFactory); + + private Analysis makeAnalysisWithMode(AnalysisMode analysisMode) { + return instance.getAnalysisBuilder() + .vcfPath(VCF_PATH) + .analysisMode(analysisMode) + .build(); + } + + @Test + public void canRunAnalysis_Full() { + Analysis analysis = makeAnalysisWithMode(AnalysisMode.FULL); + AnalysisResults analysisResults = instance.run(analysis); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + } + + @Test + public void canRunAnalysis_Sparse() { + Analysis analysis = makeAnalysisWithMode(AnalysisMode.SPARSE); + AnalysisResults analysisResults = instance.run(analysis); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + } + + @Test + public void canRunAnalysis_PassOnly() { + Analysis analysis = makeAnalysisWithMode(AnalysisMode.PASS_ONLY); + AnalysisResults analysisResults = instance.run(analysis); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + } + + @Test + public void canGetAnalysisBuilder() { + AnalysisBuilder analysisBuilder = instance.getAnalysisBuilder(); + assertThat(analysisBuilder, notNullValue()); + } + + } diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisBuilderTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisBuilderTest.java new file mode 100644 index 000000000..7a40c77d5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisBuilderTest.java @@ -0,0 +1,430 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import com.google.common.collect.Sets; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.genome.VariantDataServiceStub; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.*; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.*; + +import static java.util.Collections.singletonList; +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.hasItem; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class AnalysisBuilderTest { + + private final PriorityFactory priorityFactory = new NoneTypePriorityFactoryStub(); + private final VariantDataService variantDataService = new VariantDataServiceStub(); + + private AnalysisBuilder analysisBuilder; + + private List hpoIds = Arrays.asList("HP:0001156", "HP:0001363", "HP:0011304", "HP:0010055"); + + @Before + public void setUp() { + analysisBuilder = new AnalysisBuilder(priorityFactory, variantDataService); + } + + private List analysisSteps() { + return analysisBuilder.build().getAnalysisSteps(); + } + + @Test + public void analysisStepsAreCheckedAndCorrectedOnBuild() { + List correct = Arrays.asList( + priorityFactory.makePhivePrioritiser(), + new PriorityScoreFilter(PriorityType.PHIVE_PRIORITY, 0.501f), + new QualityFilter(500.0), + new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT), + priorityFactory.makeOmimPrioritiser() + ); + + //These are specified in a non-functional order. + analysisBuilder.hpoIds(hpoIds) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT) + .addPriorityScoreFilter(PriorityType.PHIVE_PRIORITY, 0.501f) + .addPhivePrioritiser() + .addOmimPrioritiser() + .addInheritanceFilter() + .addQualityFilter(500.0); + + assertThat(buildAndGetSteps(), equalTo(correct)); + } + + @Test + public void testAnalysisBuilderVcfPath() { + Path vcfPath = Paths.get("test.vcf"); + analysisBuilder.vcfPath(vcfPath); + assertThat(analysisBuilder.build().getVcfPath(), equalTo(vcfPath)); + } + + @Test + public void testAnalysisBuilderPedPath() { + Path pedPath = Paths.get("ped.ped"); + analysisBuilder.pedPath(pedPath); + assertThat(analysisBuilder.build().getPedPath(), equalTo(pedPath)); + } + + @Test + public void testProbandSampleName() { + String sampleName = "Zaphod Beeblebrox"; + analysisBuilder.probandSampleName(sampleName); + assertThat(analysisBuilder.build().getProbandSampleName(), equalTo(sampleName)); + } + + @Test + public void testAnalysisBuilderHpoIds_default() { + assertThat(analysisBuilder.build().getHpoIds(), equalTo(Collections.emptyList())); + } + + @Test + public void testAnalysisBuilderHpoIds() { + analysisBuilder.hpoIds(hpoIds); + assertThat(analysisBuilder.build().getHpoIds(), equalTo(hpoIds)); + } + + @Test + public void testAnalysisBuilderModeOfInheritance_default() { + assertThat(analysisBuilder.build().getModeOfInheritance(), equalTo(ModeOfInheritance.ANY)); + } + + @Test + public void testAnalysisBuilderModeOfInheritance() { + analysisBuilder.modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT); + assertThat(analysisBuilder.build().getModeOfInheritance(), equalTo(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + } + + @Test + public void testAnalysisBuilderAnalysisMode_default() { + assertThat(analysisBuilder.build().getAnalysisMode(), equalTo(AnalysisMode.PASS_ONLY)); + } + + @Test + public void testAnalysisBuilderAnalysisMode() { + analysisBuilder.analysisMode(AnalysisMode.FULL); + assertThat(analysisBuilder.build().getAnalysisMode(), equalTo(AnalysisMode.FULL)); + } + + @Test + public void testAnalysisBuilderFrequencySources_default() { + assertThat(analysisBuilder.build().getFrequencySources(), equalTo(Collections.emptySet())); + } + + @Test + public void testAnalysisBuilderFrequencySources() { + EnumSet frequencySources = EnumSet.of(FrequencySource.ESP_AFRICAN_AMERICAN, FrequencySource.EXAC_EAST_ASIAN); + analysisBuilder.frequencySources(frequencySources); + assertThat(analysisBuilder.build().getFrequencySources(), equalTo(frequencySources)); + } + + @Test + public void testAnalysisBuilderPathogenicitySources_default() { + assertThat(analysisBuilder.build().getPathogenicitySources(), equalTo(Collections.emptySet())); + } + + @Test + public void testAnalysisBuilderPathogenicitySources() { + EnumSet pathogenicitySources = EnumSet.of(PathogenicitySource.REMM, PathogenicitySource.SIFT); + analysisBuilder.pathogenicitySources(pathogenicitySources); + assertThat(analysisBuilder.build().getPathogenicitySources(), equalTo(pathogenicitySources)); + } + + private List buildAndGetSteps() { + return analysisBuilder.build().getAnalysisSteps(); + } + + @Test + public void testAddFailedVariantFilter() { + analysisBuilder.addFailedVariantFilter(); + assertThat(buildAndGetSteps(), equalTo(singletonList(new FailedVariantFilter()))); + } + + @Test + public void testAddIntervalFilter() { + GeneticInterval geneticInterval = new GeneticInterval(1, 1234, 6789); + analysisBuilder.addIntervalFilter(geneticInterval); + assertThat(buildAndGetSteps(), equalTo(singletonList(new IntervalFilter(geneticInterval)))); + } + + @Test + public void testAddEntrezGeneIdFilter() { + Set entrezIds = Sets.newHashSet(123345, 67890); + analysisBuilder.addGeneIdFilter(entrezIds); + assertThat(buildAndGetSteps(), equalTo(singletonList(new EntrezGeneIdFilter(entrezIds)))); + } + + @Test + public void testAddVariantEffectFilter() { + Set variantEffects = EnumSet.of(VariantEffect.MISSENSE_VARIANT, VariantEffect.REGULATORY_REGION_VARIANT); + analysisBuilder.addVariantEffectFilter(variantEffects); + assertThat(buildAndGetSteps(), equalTo(singletonList(new VariantEffectFilter(variantEffects)))); + } + + @Test + public void testAddQualityFilter() { + double cutoff = 500.0; + analysisBuilder.addQualityFilter(cutoff); + assertThat(buildAndGetSteps(), equalTo(singletonList(new QualityFilter(cutoff)))); + } + + @Test(expected = IllegalArgumentException.class) + public void testAddKnownVariantFilterThrowsExceptionWhenFrequencySourcesAreNotDefined() { + analysisBuilder.addKnownVariantFilter(); + } + + @Test + public void testAddKnownVariantFilter() { + analysisBuilder.frequencySources(EnumSet.allOf(FrequencySource.class)); + analysisBuilder.addKnownVariantFilter(); + assertThat(buildAndGetSteps(), equalTo(singletonList(new KnownVariantFilter()))); + } + + @Test(expected = IllegalArgumentException.class) + public void testAddFrequencyFilterThrowsExceptionWhenFrequencySourcesAreNotDefined() { + analysisBuilder.addFrequencyFilter(0.01f); + } + + @Test + public void testAddFrequencyFilter() { + Set sources = EnumSet.of(FrequencySource.ESP_ALL, FrequencySource.THOUSAND_GENOMES); + analysisBuilder.frequencySources(sources); + float cutOff = 0.01f; + analysisBuilder.addFrequencyFilter(cutOff); + assertThat(buildAndGetSteps(), equalTo(singletonList(new FrequencyFilter(cutOff)))); + } + + @Test(expected = IllegalArgumentException.class) + public void testAddPathogenicityFilterStepThrowsExceptionWhenPathogenicitySourcesAreNotDefined() { + analysisBuilder.addPathogenicityFilter(true); + } + + @Test + public void testAddPathogenicityFilter() { + Set sources = EnumSet.allOf(PathogenicitySource.class); + analysisBuilder.pathogenicitySources(sources); + boolean keepNonPathogenic = true; + analysisBuilder.addPathogenicityFilter(keepNonPathogenic); + assertThat(buildAndGetSteps(), equalTo(singletonList(new PathogenicityFilter(keepNonPathogenic)))); + } + + @Test + public void testAddPriorityScoreFilter() { + PriorityType priorityType = PriorityType.HIPHIVE_PRIORITY; + float minPriorityScore = 0.501f; + analysisBuilder.addPriorityScoreFilter(priorityType, minPriorityScore); + assertThat(buildAndGetSteps(), equalTo(singletonList(new PriorityScoreFilter(priorityType, minPriorityScore)))); + } + + @Test + public void testAddRegulatoryFeatureFilter() { + analysisBuilder.addRegulatoryFeatureFilter(); + assertThat(buildAndGetSteps(), equalTo(singletonList(new RegulatoryFeatureFilter()))); + } + + @Test + public void testAddInheritanceModeFilterNotAddedWhenModeUndefined() { + analysisBuilder.addInheritanceFilter(); + assertThat(buildAndGetSteps(), equalTo(Collections.emptyList())); + } + + @Test + public void testAddInheritanceModeFilter() { + ModeOfInheritance autosomalDominant = ModeOfInheritance.AUTOSOMAL_DOMINANT; + analysisBuilder.modeOfInheritance(autosomalDominant); + analysisBuilder.addInheritanceFilter(); + assertThat(buildAndGetSteps(), equalTo(singletonList(new InheritanceFilter(autosomalDominant)))); + } + + @Test + public void testAnalysisBuilderCanBuildCompleteAnalysis() { + EnumSet pathogenicitySources = EnumSet.of(PathogenicitySource.REMM, PathogenicitySource.SIFT); + EnumSet frequencySources = EnumSet.of(FrequencySource.ESP_AFRICAN_AMERICAN, FrequencySource.EXAC_EAST_ASIAN); + float frequencyCutOff = 1f; + FrequencyFilter frequencyFilter = new FrequencyFilter(frequencyCutOff); + + PhivePriority phivePrioritiser = priorityFactory.makePhivePrioritiser(); + + PriorityType priorityType = phivePrioritiser.getPriorityType(); + float minPriorityScore = 0.501f; + PriorityScoreFilter priorityScoreFilter = new PriorityScoreFilter(priorityType, minPriorityScore); + RegulatoryFeatureFilter regulatoryFeatureFilter = new RegulatoryFeatureFilter(); + + analysisBuilder.hpoIds(hpoIds) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT) + .analysisMode(AnalysisMode.FULL) + .frequencySources(frequencySources) + .pathogenicitySources(pathogenicitySources) + .addPhivePrioritiser() + .addPriorityScoreFilter(priorityType, minPriorityScore) + .addRegulatoryFeatureFilter() + .addFrequencyFilter(frequencyCutOff); + + Analysis analysis = analysisBuilder.build(); + assertThat(analysis.getHpoIds(), equalTo(hpoIds)); + assertThat(analysis.getModeOfInheritance(), equalTo(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + assertThat(analysis.getAnalysisMode(), equalTo(AnalysisMode.FULL)); + assertThat(analysis.getFrequencySources(), equalTo(frequencySources)); + assertThat(analysis.getPathogenicitySources(), equalTo(pathogenicitySources)); + assertThat(analysis.getAnalysisSteps(), hasItem(priorityScoreFilter)); + assertThat(analysis.getAnalysisSteps(), hasItem(frequencyFilter)); + assertThat(analysis.getAnalysisSteps(), hasItem(phivePrioritiser)); + assertThat(analysis.getAnalysisSteps(), hasItem(regulatoryFeatureFilter)); + //check that the order of analysis steps is preserved + assertThat(analysis.getAnalysisSteps(), equalTo(Arrays.asList(phivePrioritiser, priorityScoreFilter, regulatoryFeatureFilter, frequencyFilter))); + } + + @Test + public void testCanSpecifyOmimPrioritiser() { + Prioritiser prioritiser = priorityFactory.makeOmimPrioritiser(); + + analysisBuilder.addOmimPrioritiser(); + + assertThat(analysisSteps(), equalTo(singletonList(prioritiser))); + } + + @Test(expected = IllegalArgumentException.class) + public void testAddPhivePrioritiserThrowsExcptionWhenHpoIdsNotDefined() { + analysisBuilder.addPhivePrioritiser(); + assertThat(analysisSteps(), equalTo(singletonList(priorityFactory.makePhivePrioritiser()))); + } + + @Test + public void testCanSpecifyPhivePrioritiser() { + Prioritiser prioritiser = priorityFactory.makePhivePrioritiser(); + + analysisBuilder.hpoIds(hpoIds); + analysisBuilder.addPhivePrioritiser(); + + assertThat(analysisSteps(), equalTo(singletonList(prioritiser))); + } + + @Test(expected = IllegalArgumentException.class) + public void testAddHiPhivePrioritiserThrowsExceptionWhenNoHpoIdsDefined() { + Prioritiser prioritiser = priorityFactory.makeHiPhivePrioritiser(HiPhiveOptions.DEFAULT); + + analysisBuilder.addHiPhivePrioritiser(); + + assertThat(analysisSteps(), equalTo(singletonList(prioritiser))); + } + + @Test + public void testCanSpecifyHiPhivePrioritiser_noOptions() { + Prioritiser prioritiser = priorityFactory.makeHiPhivePrioritiser(HiPhiveOptions.DEFAULT); + + analysisBuilder.hpoIds(hpoIds) + .addHiPhivePrioritiser(); + + assertThat(analysisSteps(), equalTo(singletonList(prioritiser))); + } + + @Test + public void testCanSpecifyHiPhivePrioritiser_withOptions() { + HiPhiveOptions options = HiPhiveOptions.builder() + .diseaseId("DISEASE:123") + .candidateGeneSymbol("GENE1") + .runParams("human,mouse,fish,ppi") + .build(); + + Prioritiser prioritiser = priorityFactory.makeHiPhivePrioritiser(options); + + analysisBuilder.hpoIds(hpoIds) + .addHiPhivePrioritiser(options); + + assertThat(analysisSteps(), equalTo(singletonList(prioritiser))); + } + + @Test(expected = IllegalArgumentException.class) + public void testAddPhenixPrioritiserThrowsExceptionWhenNoHpoIdsDefined() { + Prioritiser prioritiser = priorityFactory.makePhenixPrioritiser(); + + analysisBuilder.addPhenixPrioritiser(); + + assertThat(analysisSteps(), equalTo(singletonList(prioritiser))); + } + + @Test + public void testCanSpecifyPhenixPrioritiser() { + Prioritiser prioritiser = priorityFactory.makePhenixPrioritiser(); + + analysisBuilder.hpoIds(hpoIds) + .addPhenixPrioritiser(); + + assertThat(analysisSteps(), equalTo(singletonList(prioritiser))); + } + + @Test(expected = IllegalArgumentException.class) + public void testExomeWalkerPrioritiserThrowsExceptionWithEmptyList() { + analysisBuilder.addExomeWalkerPrioritiser(Collections.emptyList()); + } + + @Test(expected = IllegalArgumentException.class) + public void testExomeWalkerPrioritiserThrowsExceptionWithNullList() { + analysisBuilder.addExomeWalkerPrioritiser(null); + } + + @Test + public void testCanSpecifyExomeWalkerPrioritiser() { + List seedGenes = new ArrayList<>(Arrays.asList(1, 2, 3, 4)); + Prioritiser prioritiser = priorityFactory.makeExomeWalkerPrioritiser(seedGenes); + + analysisBuilder.addExomeWalkerPrioritiser(seedGenes); + + assertThat(analysisSteps(), equalTo(singletonList(prioritiser))); + } + + @Test + public void testCanSpecifyTwoPrioritisers() { + Prioritiser omimPrioritiser = priorityFactory.makeOmimPrioritiser(); + Prioritiser phivePrioritiser = priorityFactory.makePhivePrioritiser(); + List steps = Arrays.asList(omimPrioritiser, phivePrioritiser); + + analysisBuilder.hpoIds(hpoIds) + .addOmimPrioritiser() + .addPhivePrioritiser(); + + assertThat(analysisSteps(), equalTo(steps)); + } + + @Test + public void testCanAddFilterStep() { + AnalysisStep filter = new PassAllVariantEffectsFilter(); + + analysisBuilder.addAnalysisStep(filter); + + assertThat(analysisSteps(), equalTo(singletonList(filter))); + } +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisFactoryTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisFactoryTest.java new file mode 100644 index 000000000..6ef24c32a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisFactoryTest.java @@ -0,0 +1,67 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.genome.*; +import org.monarchinitiative.exomiser.core.prioritisers.NoneTypePriorityFactoryStub; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactory; + +import static org.hamcrest.CoreMatchers.is; +import static org.hamcrest.CoreMatchers.notNullValue; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class AnalysisFactoryTest { + + private final PriorityFactory priorityFactory = new NoneTypePriorityFactoryStub(); + private final VariantDataService variantDataService = new VariantDataServiceStub(); + private final GeneFactory geneFactory = TestFactory.buildDefaultGeneFactory(); + private final VariantFactory variantFactory = TestFactory.buildDefaultVariantFactory(); + + private final AnalysisFactory instance = new AnalysisFactory(geneFactory, variantFactory, priorityFactory, variantDataService); + + @Test + public void testCanMakeFullAnalysisRunner() { + AnalysisRunner analysisRunner = instance.getAnalysisRunnerForMode(AnalysisMode.FULL); + assertThat(SimpleAnalysisRunner.class.isInstance(analysisRunner), is(true)); + } + + @Test + public void testCanMakeSparseAnalysisRunner() { + AnalysisRunner analysisRunner = instance.getAnalysisRunnerForMode(AnalysisMode.SPARSE); + assertThat(SparseAnalysisRunner.class.isInstance(analysisRunner), is(true)); + } + + @Test + public void testCanMakePassOnlyAnalysisRunner() { + AnalysisRunner analysisRunner = instance.getAnalysisRunnerForMode(AnalysisMode.PASS_ONLY); + assertThat(PassOnlyAnalysisRunner.class.isInstance(analysisRunner), is(true)); + } + + @Test + public void testCanMakeAnalysisBuilder() { + assertThat(instance.getAnalysisBuilder(), notNullValue()); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisParserTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisParserTest.java new file mode 100644 index 000000000..69c7f5c77 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisParserTest.java @@ -0,0 +1,447 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.AnalysisParser.AnalysisFileNotFoundException; +import org.monarchinitiative.exomiser.core.analysis.AnalysisParser.AnalysisParserException; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.genome.VariantDataServiceStub; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.HiPhiveOptions; +import org.monarchinitiative.exomiser.core.prioritisers.NoneTypePriorityFactoryStub; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactory; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; +import org.monarchinitiative.exomiser.core.writers.OutputSettings; + +import java.nio.file.Paths; +import java.util.*; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class AnalysisParserTest { + + private AnalysisParser instance; + private PriorityFactory priorityFactory; + + private List analysisSteps; + + private List hpoIds; + private Set frequencySources; + private Set pathogenicitySources; + + @Before + public void setUp() { + priorityFactory = new NoneTypePriorityFactoryStub(); + instance = new AnalysisParser(priorityFactory, new VariantDataServiceStub()); + + analysisSteps = new ArrayList<>(); + hpoIds = new ArrayList<>(Arrays.asList("HP:0001156", "HP:0001363", "HP:0011304", "HP:0010055")); + frequencySources = EnumSet.of(FrequencySource.THOUSAND_GENOMES, FrequencySource.ESP_AFRICAN_AMERICAN, FrequencySource.EXAC_AFRICAN_INC_AFRICAN_AMERICAN); + pathogenicitySources = EnumSet.of(PathogenicitySource.SIFT, PathogenicitySource.POLYPHEN, PathogenicitySource.MUTATION_TASTER); + } + + private static String addStepToAnalysis(String step) { + return String.format("analysis:\n" + + " vcf: test.vcf\n" + + " ped:\n" + + " modeOfInheritance: AUTOSOMAL_DOMINANT\n" + + " hpoIds: ['HP:0001156', 'HP:0001363', 'HP:0011304', 'HP:0010055']\n" + + " analysisMode: PASS_ONLY \n" + + " frequencySources: [THOUSAND_GENOMES, ESP_AFRICAN_AMERICAN, EXAC_AFRICAN_INC_AFRICAN_AMERICAN]\n" + + " pathogenicitySources: [SIFT, POLYPHEN, MUTATION_TASTER]\n" + + " steps: [" + + " %s\n" + + "]", step); + } + + @Test + public void testParseAnalysisSteps_NoSteps() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("")); + System.out.println(analysis); + assertThat(analysis.getVcfPath(), equalTo(Paths.get("test.vcf"))); + assertThat(analysis.getPedPath(), nullValue()); + assertThat(analysis.getProbandSampleName(), equalTo("")); + assertThat(analysis.getModeOfInheritance(), equalTo(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + assertThat(analysis.getHpoIds(), equalTo(hpoIds)); + assertThat(analysis.getAnalysisMode(), equalTo(AnalysisMode.PASS_ONLY)); + assertThat(analysis.getFrequencySources(), equalTo(frequencySources)); + assertThat(analysis.getPathogenicitySources(), equalTo(pathogenicitySources)); + assertThat(analysis.getAnalysisSteps().isEmpty(), is(true)); + } + + @Test(expected = AnalysisParserException.class) + public void throwsExceptionWhenNoVcfIsSet() { + instance.parseAnalysis( + "analysis:\n" + + " vcf: \n" + ); + } + + @Test + public void testParseAnalysisProbandSampleNameSpecified() { + Analysis analysis = instance.parseAnalysis( + "analysis:\n" + + " vcf: test.vcf\n" + + " proband: Bod \n" + + " "); + assertThat(analysis.getProbandSampleName(), equalTo("Bod")); + } + + @Test + public void testParseAnalysis_FullAnalysisMode() { + Analysis analysis = instance.parseAnalysis( + "analysis:\n" + + " vcf: test.vcf\n" + + " analysisMode: FULL \n" + + " "); + assertThat(analysis.getAnalysisMode(), equalTo(AnalysisMode.FULL)); + } + + @Test + public void testParseAnalysisModeOfInheritanceAutosomalDominant() { + Analysis analysis = instance.parseAnalysis( + "analysis:\n" + + " vcf: test.vcf\n" + + " modeOfInheritance: AUTOSOMAL_DOMINANT \n" + + " "); + assertThat(analysis.getModeOfInheritance(), equalTo(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + } + + @Test(expected = AnalysisParserException.class) + public void testParseAnalysisModeOfInheritanceUserUsesWrongValue() { + Analysis analysis = instance.parseAnalysis( + "analysis:\n" + + " vcf: test.vcf\n" + + " modeOfInheritance: AD\n" + + " "); + assertThat(analysis.getModeOfInheritance(), equalTo(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + } + + /** + * geneScoreMode was removed in commit 2055ac3b36c401569d9b201f43cf23d1f8c6aed2. We're checking that old analysis + * scripts will still function. + */ + @Test + public void testParseAnalysis_DeprecatedGeneScoreModeHasNoEffect() { + Analysis analysis = instance.parseAnalysis( + "analysis:\n" + + " vcf: test.vcf\n" + + " geneScoreMode: RAW_SCORE\n" + + " "); + Analysis expected = Analysis.builder().vcfPath(Paths.get("test.vcf")).build(); + assertThat(analysis, equalTo(expected)); + } + + @Test + public void testParseAnalysisStep_UnsupportedFilterAddsNothingToAnalysisSteps() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("wibbleFilter: {}")); + assertThat(analysis.getAnalysisSteps().isEmpty(), is(true)); + } + + @Test + public void testParseAnalysisStep_FailedVariantFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("failedVariantFilter: {}")); + analysisSteps.add(new FailedVariantFilter()); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_IntervalFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("intervalFilter: {interval: 'chr10:122892600-122892700'}")); + analysisSteps.add(new IntervalFilter(new GeneticInterval(10, 122892600, 122892700))); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_GeneIdFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("geneIdFilter: {geneIds: [12345, 34567, 98765]}")); + analysisSteps.add(new EntrezGeneIdFilter(new LinkedHashSet<>(Arrays.asList(12345, 34567, 98765)))); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_QualityFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("qualityFilter: {minQuality: 50.0}")); + analysisSteps.add(new QualityFilter(50.0f)); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_VariantEffectFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("variantEffectFilter: {remove: [SYNONYMOUS_VARIANT, INTERGENIC_VARIANT]}")); + analysisSteps.add(new VariantEffectFilter(EnumSet.of(VariantEffect.SYNONYMOUS_VARIANT, VariantEffect.INTERGENIC_VARIANT))); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test(expected = AnalysisParserException.class) + public void testParseAnalysisStep_VariantEffectFilter_illegalVariantEffect() { + instance.parseAnalysis(addStepToAnalysis("variantEffectFilter: {remove: [WIBBLE]}")); + } + + @Test + public void testParseAnalysisStep_KnownVariantFilterFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("knownVariantFilter: {}")); + analysisSteps.add(new KnownVariantFilter()); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test(expected = AnalysisParserException.class) + public void testParseAnalysisStep_FrequencyFilterNoFrequencySourcesDefined() { + String script = "analysis:\n" + + " vcf: test.vcf\n" + + " frequencySources: []\n" + + " steps: [" + + " frequencyFilter: {maxFrequency: 1.0}\n" + + "]"; + + instance.parseAnalysis(script); + } + + @Test + public void testParseAnalysisStep_FrequencyFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("frequencyFilter: {maxFrequency: 1.0}")); + analysisSteps.add(new FrequencyFilter(1.0f)); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test(expected = AnalysisParserException.class) + public void testParseAnalysisStep_PathogenicityFilterNoPathSourcesDefined() { + String script = "analysis:\n" + + " vcf: test.vcf\n" + + " pathogenicitySources: []\n" + + " steps: [" + + " pathogenicityFilter: {keepNonPathogenic: false}\n" + + "]"; + + instance.parseAnalysis(script); + } + + @Test + public void testParseAnalysisStep_PathogenicityFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("pathogenicityFilter: {keepNonPathogenic: false}")); + analysisSteps.add(new PathogenicityFilter(false)); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_PriorityScoreFilter() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("priorityScoreFilter: {priorityType: HIPHIVE_PRIORITY, minPriorityScore: 0.65}")); + analysisSteps.add(new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, 0.65f)); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_InheritanceFilterUndefinedMode() { + Analysis analysis = instance.parseAnalysis( + "analysis:\n" + + " vcf: test.vcf\n" + + " modeOfInheritance: UNINITIALIZED\n" + + " hpoIds: []\n" + + " analysisMode: PASS_ONLY \n" + + " pathogenicitySources: []\n" + + " frequencySources: []\n" + + " steps: [" + + " inheritanceFilter: {}\n" + + "]" + ); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test(expected = AnalysisParserException.class) + public void testParseAnalysisStep_InheritanceFilterUnrecognisedValue() { + instance.parseAnalysis( + "analysis:\n" + + " vcf: test.vcf\n" + + " modeOfInheritance: WIBBLE!" + ); + } + + @Test + public void testParseAnalysisStep_InheritanceFilterDefinedMode() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("inheritanceFilter: {}")); + analysisSteps.add(new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_OmimPrioritiser() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("omimPrioritiser: {}")); + analysisSteps.add(priorityFactory.makeOmimPrioritiser()); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_HiPhivePrioritiserWithDefaultOptions() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("hiPhivePrioritiser: {}")); + analysisSteps.add(priorityFactory.makeHiPhivePrioritiser(HiPhiveOptions.DEFAULT)); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_HiPhivePrioritiserWithUserDefinedOptions() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("hiPhivePrioritiser: {diseaseId: 'OMIM:101600', candidateGeneSymbol: FGFR2, runParams: 'human,mouse,fish,ppi'}")); + HiPhiveOptions hiPhiveOptions = HiPhiveOptions.builder().diseaseId("OMIM:101600").candidateGeneSymbol("FGFR2").runParams("human,mouse,fish,ppi").build(); + analysisSteps.add(priorityFactory.makeHiPhivePrioritiser(hiPhiveOptions)); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_PhivePrioritiser() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("phivePrioritiser: {}")); + analysisSteps.add(priorityFactory.makePhivePrioritiser()); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_PhenixPrioritiser() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("phenixPrioritiser: {}")); + analysisSteps.add(priorityFactory.makePhenixPrioritiser()); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisStep_WalkerPrioritiser() { + Analysis analysis = instance.parseAnalysis(addStepToAnalysis("exomeWalkerPrioritiser: {seedGeneIds: [11111, 22222, 33333]}")); + analysisSteps.add(priorityFactory.makeExomeWalkerPrioritiser(new ArrayList<>(Arrays.asList(11111, 22222, 33333)))); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test + public void testParseAnalysisFileFromPath() { + ModeOfInheritance modeOfInheritance = ModeOfInheritance.AUTOSOMAL_DOMINANT; + + Analysis analysis = instance.parseAnalysis(Paths.get("src/test/resources/analysisExample.yml")); + System.out.println(analysis); + assertThat(analysis.getVcfPath(), equalTo(Paths.get("test.vcf"))); + assertThat(analysis.getPedPath(), nullValue()); + assertThat(analysis.getHpoIds(), equalTo(hpoIds)); + assertThat(analysis.getModeOfInheritance(), equalTo(modeOfInheritance)); + assertThat(analysis.getFrequencySources(), equalTo(frequencySources)); + assertThat(analysis.getPathogenicitySources(), equalTo(pathogenicitySources)); + analysisSteps.add(new IntervalFilter(new GeneticInterval(10, 123256200, 123256300))); + analysisSteps.add(new EntrezGeneIdFilter(new LinkedHashSet<>(Arrays.asList(12345, 34567, 98765)))); + analysisSteps.add(new QualityFilter(50.0f)); + analysisSteps.add(new VariantEffectFilter(EnumSet.of(VariantEffect.SYNONYMOUS_VARIANT))); + analysisSteps.add(new KnownVariantFilter()); + analysisSteps.add(new FrequencyFilter(1.0f)); + analysisSteps.add(new PathogenicityFilter(false)); + analysisSteps.add(new InheritanceFilter(modeOfInheritance)); + analysisSteps.add(priorityFactory.makeOmimPrioritiser()); + analysisSteps.add(priorityFactory.makeHiPhivePrioritiser(HiPhiveOptions.DEFAULT)); + analysisSteps.add(priorityFactory.makeHiPhivePrioritiser(HiPhiveOptions.builder() + .diseaseId("OMIM:101600") + .candidateGeneSymbol("FGFR2") + .build())); + analysisSteps.add(new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, 0.7f)); + assertThat(analysis.getAnalysisSteps(), equalTo(analysisSteps)); + } + + @Test(expected = AnalysisFileNotFoundException.class) + public void testParseAnalysis_NonExistentFile() { + instance.parseAnalysis(Paths.get("src/test/resources/wibble")); + } + + @Test(expected = AnalysisFileNotFoundException.class) + public void testParseOutputSettings_NonExistentFile() { + instance.parseOutputSettings(Paths.get("src/test/resources/wibble")); + } + + @Test(expected = AnalysisParserException.class) + public void testParseOutputSettings_OutputPassVariantsOnlyThrowsExceptionWithNoValue() { + instance.parseOutputSettings( + "outputOptions:\n" + + " outputPassVariantsOnly: "); + } + + @Test + public void testParseOutputSettings_OutputPassVariantsOnly() { + OutputSettings outputSettings = instance.parseOutputSettings( + "outputOptions:\n" + + " outputPassVariantsOnly: true\n" + + " numGenes: 1\n" + + " outputPrefix: results/Pfeiffer-hiphive\n" + + " outputFormats: [HTML, TSV-GENE, TSV-VARIANT, VCF]\n"); + assertThat(outputSettings.outputPassVariantsOnly(), is(true)); + } + + @Test + public void testParseOutputSettings_NumGenesToShow() { + OutputSettings outputSettings = instance.parseOutputSettings( + "outputOptions:\n" + + " outputPassVariantsOnly: true\n" + + " numGenes: 1\n" + + " outputPrefix: results/Pfeiffer-hiphive\n" + + " outputFormats: [HTML, TSV-GENE, TSV-VARIANT, VCF]\n"); + assertThat(outputSettings.getNumberOfGenesToShow(), equalTo(1)); + } + + @Test + public void testParseOutputSettings_OutputPrefix() { + OutputSettings outputSettings = instance.parseOutputSettings( + "outputOptions:\n" + + " outputPassVariantsOnly: true\n" + + " numGenes: 1\n" + + " outputPrefix: results/Pfeiffer-hiphive\n" + + " outputFormats: [HTML, TSV-GENE, TSV-VARIANT, VCF]\n"); + assertThat(outputSettings.getOutputPrefix(), equalTo("results/Pfeiffer-hiphive")); + } + + @Test + public void testParseOutputSettings_OutputFormats() { + OutputSettings outputSettings = instance.parseOutputSettings( + "outputOptions:\n" + + " outputPassVariantsOnly: true\n" + + " numGenes: 1\n" + + " outputPrefix: results/Pfeiffer-hiphive\n" + + " outputFormats: [HTML, TSV-GENE, TSV-VARIANT, VCF]\n"); + Set outputFormats = EnumSet.of(OutputFormat.HTML, OutputFormat.TSV_GENE, OutputFormat.TSV_VARIANT, OutputFormat.VCF); + assertThat(outputSettings.getOutputFormats(), equalTo((outputFormats))); + } + + @Test + public void testParseOutputSettings() { + OutputSettings outputSettings = instance.parseOutputSettings(Paths.get("src/test/resources/analysisExample.yml")); + OutputSettings expected = OutputSettings.builder() + .outputPassVariantsOnly(false) + .numberOfGenesToShow(0) + .outputPrefix("results/Pfeiffer-hiphive") + .outputFormats(EnumSet.of(OutputFormat.TSV_GENE, OutputFormat.TSV_VARIANT, OutputFormat.VCF, OutputFormat.HTML)) + .build(); + assertThat(outputSettings, equalTo(expected)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisResultsTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisResultsTest.java new file mode 100644 index 000000000..03c4e9e4a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisResultsTest.java @@ -0,0 +1,181 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis; + +import de.charite.compbio.jannovar.pedigree.Pedigree; +import htsjdk.variant.vcf.VCFHeader; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.TranscriptAnnotation; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.*; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class AnalysisResultsTest { + + @Test + public void noArgsConstructorInitialisesGenesVariantEvalations() { + AnalysisResults instance = AnalysisResults.builder().build(); + assertThat(instance.getGenes(), notNullValue()); + assertThat(instance.getVariantEvaluations(), notNullValue()); + } + + @Test + public void testCanSetAndGetProbandSampleName() { + String probandSampleName = "Slartibartfast"; + + AnalysisResults instance = AnalysisResults.builder() + .probandSampleName(probandSampleName) + .build(); + + assertThat(instance.getProbandSampleName(), equalTo(probandSampleName)); + } + + @Test + public void testCanSetAndGetSampleNames() { + List sampleNames = Arrays.asList("David"); + + AnalysisResults instance = AnalysisResults.builder() + .sampleNames(sampleNames) + .build(); + + assertThat(instance.getSampleNames(), equalTo(sampleNames)); + } + + @Test + public void testCanSetAndGetVcfFilePath() { + Path vcfPath = Paths.get("vcf"); + AnalysisResults instance = AnalysisResults.builder() + .vcfPath(vcfPath) + .build(); + assertThat(instance.getVcfPath(), equalTo(vcfPath)); + } + + @Test + public void testCanSetAndGetPedFilePath() { + Path pedPath = Paths.get("ped"); + AnalysisResults instance = AnalysisResults.builder() + .pedPath(pedPath) + .build(); + assertThat(instance.getPedPath(), equalTo(pedPath)); + } + + @Test + public void testCanSetAndGetVcfHeader() { + VCFHeader vcfHeader = new VCFHeader(); + AnalysisResults instance = AnalysisResults.builder() + .vcfHeader(vcfHeader) + .build(); + assertThat(instance.getVcfHeader(), equalTo(vcfHeader)); + } + + @Test + public void testCanSetAndGetVariantEvaluations() { + List variantEvaluations = new ArrayList<>(); + AnalysisResults instance = AnalysisResults.builder() + .variantEvaluations(variantEvaluations) + .build(); + assertThat(instance.getVariantEvaluations(), equalTo(variantEvaluations)); + } + + @Test + public void testCanSetAndGetPedigree() { + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Individual"); + AnalysisResults instance = AnalysisResults.builder() + .pedigree(pedigree) + .build(); + assertThat(instance.getPedigree(), equalTo(pedigree)); + } + + @Test + public void testCanSetAndGetGenes() { + List genes = new ArrayList<>(); + AnalysisResults instance = AnalysisResults.builder() + .genes(genes) + .build(); + assertThat(instance.getGenes(), equalTo(genes)); + } + + @Test + public void testCanReturnUnannotatedVariantEvaluations() { + VariantEvaluation annotatedVariantEvaluation = VariantEvaluation.builder(10, 123353297, "G", "C") + .annotations(Collections.singletonList(TranscriptAnnotation.empty())) + .build(); + + VariantEvaluation unAnnotatedVariantEvaluation = VariantEvaluation.builder(7, 155604800, "C", "CTT").build(); + + List allVariantEvaluations = Arrays.asList(annotatedVariantEvaluation, unAnnotatedVariantEvaluation); + + AnalysisResults instance = AnalysisResults.builder() + .variantEvaluations(allVariantEvaluations) + .build(); + + List unAnnotatedVariantEvaluations = Collections.singletonList(unAnnotatedVariantEvaluation); + + assertThat(instance.getUnAnnotatedVariantEvaluations(), equalTo(unAnnotatedVariantEvaluations)); + } + + @Test + public void testHashCode() { + AnalysisResults instance = AnalysisResults.builder().build(); + AnalysisResults other = AnalysisResults.builder().build(); + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + + @Test + public void testEquals() { + Path vcf = Paths.get("test.vcf"); + AnalysisResults instance = AnalysisResults.builder().vcfPath(vcf).build(); + AnalysisResults other = AnalysisResults.builder().vcfPath(vcf).build(); + assertThat(instance, equalTo(other)); + } + + @Test + public void testNotEquals() { + AnalysisResults instance = AnalysisResults.builder().vcfPath(Paths.get("test.vcf")).build(); + AnalysisResults other = AnalysisResults.builder().pedPath(Paths.get("other.ped")).build(); + assertThat(instance, not(equalTo(other))); + } + + @Test + public void testString() { + AnalysisResults instance = AnalysisResults.builder().vcfPath(Paths.get("test.vcf")).pedPath(Paths.get("test.ped")).build(); + + System.out.println(instance); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunnerSuite.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunnerSuite.java new file mode 100644 index 000000000..8c7ba1d8c --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunnerSuite.java @@ -0,0 +1,32 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import org.junit.runner.RunWith; +import org.junit.runners.Suite; + +/** + * @author Jules Jacobsen + */ +@RunWith(Suite.class) +@Suite.SuiteClasses({SimpleAnalysisRunnerTest.class, SparseAnalysisRunnerTest.class, PassOnlyAnalysisRunnerTest.class}) +public class AnalysisRunnerSuite { +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunnerTestBase.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunnerTestBase.java new file mode 100644 index 000000000..878d812c4 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisRunnerTestBase.java @@ -0,0 +1,81 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis; + +import org.monarchinitiative.exomiser.core.genome.*; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.Arrays; +import java.util.List; +import java.util.Map; + +import static java.util.stream.Collectors.toMap; + +/** + * Contains common methods required by the AnalysisRunnerTest classes. + * + * @author Jules Jacobsen + */ +public abstract class AnalysisRunnerTestBase { + + private static final Logger logger = LoggerFactory.getLogger(AnalysisRunnerTestBase.class); + + protected final Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); + + final Path twoAffectedPedPath = Paths.get("src/test/resources/inheritance/twoAffected.ped"); + final Path childAffectedPedPath = Paths.get("src/test/resources/inheritance/childAffected.ped"); + final Path inheritanceFilterVCFPath = Paths.get("src/test/resources/inheritance/inheritanceFilterTest.vcf"); + + final GeneFactory geneFactory = TestFactory.buildDefaultGeneFactory(); + final VariantFactory variantFactory = TestFactory.buildDefaultVariantFactory(); + final VariantDataService stubDataService = new VariantDataServiceStub(); + + Analysis makeAnalysis(Path vcfPath, AnalysisStep... analysisSteps) { + return Analysis.builder() + .vcfPath(vcfPath) + .steps(Arrays.asList(analysisSteps)) + .build(); + } + + Map makeResults(List genes) { + return genes.stream().collect(toMap(Gene::getGeneSymbol, gene -> gene)); + } + + void printResults(AnalysisResults analysisResults) { + for (Gene gene : analysisResults.getGenes()) { + logger.info("{}", gene); + for (VariantEvaluation variantEvaluation : gene.getVariantEvaluations()) { + logger.info("{}", variantEvaluation); + } + } + } + +} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepCheckerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepCheckerTest.java similarity index 89% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepCheckerTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepCheckerTest.java index ab46b1552..68c86ebba 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/AnalysisStepCheckerTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepCheckerTest.java @@ -1,41 +1,44 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.analysis; +package org.monarchinitiative.exomiser.core.analysis; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.FrequencyFilter; +import org.monarchinitiative.exomiser.core.filters.InheritanceFilter; +import org.monarchinitiative.exomiser.core.filters.KnownVariantFilter; +import org.monarchinitiative.exomiser.core.filters.PriorityScoreFilter; +import org.monarchinitiative.exomiser.core.prioritisers.MockPrioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.OMIMPriority; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; -import de.charite.compbio.exomiser.core.filters.FrequencyFilter; -import de.charite.compbio.exomiser.core.filters.InheritanceFilter; -import de.charite.compbio.exomiser.core.filters.KnownVariantFilter; -import de.charite.compbio.exomiser.core.filters.PriorityScoreFilter; -import de.charite.compbio.exomiser.core.prioritisers.MockPrioritiser; -import de.charite.compbio.exomiser.core.prioritisers.OMIMPriority; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; import java.util.ArrayList; import java.util.HashMap; import java.util.List; + import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Ignore; -import org.junit.Test; /** * @@ -51,7 +54,7 @@ public class AnalysisStepCheckerTest { private static final KnownVariantFilter KNOWN_VARIANT_FILTER = new KnownVariantFilter(); private static final FrequencyFilter FREQUENCY_FILTER = new FrequencyFilter(0.1f); private static final InheritanceFilter INHERITANCE_FILTER = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT); - private static final OMIMPriority OMIM_PRIORITISER = new OMIMPriority(); + private static final OMIMPriority OMIM_PRIORITISER = new OMIMPriority(TestPriorityServiceFactory.STUB_SERVICE); private static final PriorityScoreFilter OMIM_PRIORITY_SCORE_FILTER = new PriorityScoreFilter(PriorityType.OMIM_PRIORITY, 0f); private static final MockPrioritiser NONE_TYPE_PRIORITISER = new MockPrioritiser(PriorityType.NONE, new HashMap<>()); private static final PriorityScoreFilter NONE_TYPE_PRIORITY_SCORE_FILTER = new PriorityScoreFilter(PriorityType.NONE, 0f); diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepTest.java new file mode 100644 index 000000000..3967e5a4d --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisStepTest.java @@ -0,0 +1,102 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.InheritanceFilter; +import org.monarchinitiative.exomiser.core.filters.KnownVariantFilter; +import org.monarchinitiative.exomiser.core.filters.PriorityScoreFilter; +import org.monarchinitiative.exomiser.core.prioritisers.OMIMPriority; +import org.monarchinitiative.exomiser.core.prioritisers.PhivePriority; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; + +import static org.hamcrest.MatcherAssert.assertThat; +import static org.hamcrest.core.Is.is; + +/** + * @author Jules Jacobsen + */ +public class AnalysisStepTest { + + private static final AnalysisStep PHIVE_PRIORITY = new PhivePriority(TestPriorityServiceFactory.STUB_SERVICE); + private static final AnalysisStep PRIORITY_SCORE_FILTER = new PriorityScoreFilter(PriorityType.PHIVE_PRIORITY, 0.6f); + private static final AnalysisStep KNOWN_VARIANT_FILTER = new KnownVariantFilter(); + private static final AnalysisStep OMIM_PRIORITY = new OMIMPriority(TestPriorityServiceFactory.STUB_SERVICE); + private static final AnalysisStep INHERITANCE_FILTER = new InheritanceFilter(ModeOfInheritance.ANY); + + @Test + public void testIsInheritanceModeDependent_OMIMPriority() { + assertThat(OMIM_PRIORITY.isInheritanceModeDependent(), is(true)); + } + + @Test + public void testIsInheritanceModeDependent_InheritanceModeFilter() { + assertThat(INHERITANCE_FILTER.isInheritanceModeDependent(), is(true)); + } + + @Test + public void testIsInheritanceModeDependent_notInheritanceModeDependant() { + assertThat(KNOWN_VARIANT_FILTER.isInheritanceModeDependent(), is(false)); + } + + @Test + public void testIsOnlyGeneDependent_inheritanceModeDependantGeneFilter() { + assertThat(INHERITANCE_FILTER.isOnlyGeneDependent(), is(false)); + } + + @Test + public void testIsOnlyGeneDependent_inheritanceModeDependantPrioritiser() { + assertThat(OMIM_PRIORITY.isOnlyGeneDependent(), is(false)); + } + + @Test + public void testIsOnlyGeneDependent_variantFilter() { + assertThat(KNOWN_VARIANT_FILTER.isOnlyGeneDependent(), is(false)); + } + + @Test + public void testIsOnlyGeneDependent_otherPrioritiser() { + assertThat(PHIVE_PRIORITY.isOnlyGeneDependent(), is(true)); + } + + @Test + public void testIsOnlyGeneDependent_priorityScoreFilter() { + assertThat(PRIORITY_SCORE_FILTER.isOnlyGeneDependent(), is(true)); + } + + @Test + public void testIsVariantFilter_variantFilter() { + assertThat(KNOWN_VARIANT_FILTER.isVariantFilter(), is(true)); + } + + @Test + public void testIsVariantFilter_geneFilter() { + assertThat(INHERITANCE_FILTER.isVariantFilter(), is(false)); + } + + @Test + public void testIsVariantFilter_prioritiser() { + assertThat(OMIM_PRIORITY.isVariantFilter(), is(false)); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisTest.java new file mode 100644 index 000000000..c1a7acd18 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/AnalysisTest.java @@ -0,0 +1,232 @@ + +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import com.google.common.collect.Lists; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.NoneTypePrioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.*; + +import static org.hamcrest.CoreMatchers.*; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class AnalysisTest { + + private static final Analysis DEFAULT_ANALYSIS = Analysis.builder().build(); + + private Analysis.Builder newBuilder() { + return Analysis.builder(); + } + + private List getAnalysisSteps() { + VariantFilter geneIdFilter = new EntrezGeneIdFilter(new HashSet<>()); + Prioritiser noneTypePrioritiser = new NoneTypePrioritiser(); + GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.ANY); + VariantFilter targetFilter = new PassAllVariantEffectsFilter(); + + return Lists.newArrayList(geneIdFilter, noneTypePrioritiser, inheritanceFilter, targetFilter); + } + + @Test + public void testCanSetAndGetVcfFilePath() { + Path vcfPath = Paths.get("vcf"); + Analysis instance = newBuilder() + .vcfPath(vcfPath) + .build(); + assertThat(instance.getVcfPath(), equalTo(vcfPath)); + } + + @Test + public void testCanSetAndGetPedFilePath() { + Path pedPath = Paths.get("ped"); + Analysis instance = newBuilder() + .pedPath(pedPath) + .build(); + assertThat(instance.getPedPath(), equalTo(pedPath)); + } + + @Test + public void canSetProbandSampleName() { + String probandSampleName = "Slartibartfast"; + Analysis instance = Analysis.builder() + .probandSampleName(probandSampleName) + .build(); + assertThat(instance.getProbandSampleName(), equalTo(probandSampleName)); + } + + @Test + public void modeOfInheritanceDefaultsToUnspecified() { + assertThat(DEFAULT_ANALYSIS.getModeOfInheritance(), equalTo(ModeOfInheritance.ANY)); + } + + @Test + public void testCanMakeAnalysis_specifyModeOfInheritance() { + ModeOfInheritance modeOfInheritance = ModeOfInheritance.AUTOSOMAL_DOMINANT; + Analysis instance = newBuilder() + .modeOfInheritance(modeOfInheritance) + .build(); + assertThat(instance.getModeOfInheritance(), equalTo(modeOfInheritance)); + } + + @Test + public void analysisModeDefaultsToPassOnly() { + assertThat(DEFAULT_ANALYSIS.getAnalysisMode(), equalTo(AnalysisMode.PASS_ONLY)); + } + + @Test + public void analysisCanSpecifyAlternativeAnalysisMode() { + Analysis instance = newBuilder() + .analysisMode(AnalysisMode.FULL) + .build(); + assertThat(instance.getAnalysisMode(), equalTo(AnalysisMode.FULL)); + } + + @Test + public void testFrequencySourcesAreEmptyByDefault() { + assertThat(DEFAULT_ANALYSIS.getFrequencySources().isEmpty(), is(true)); + } + + @Test + public void canSpecifyFrequencySources() { + Set sources = EnumSet.allOf(FrequencySource.class); + Analysis instance = newBuilder() + .frequencySources(sources) + .build(); + assertThat(instance.getFrequencySources(), equalTo(sources)); + } + + @Test + public void testPathogenicitySourcesAreEmptyByDefault() { + assertThat(DEFAULT_ANALYSIS.getPathogenicitySources().isEmpty(), is(true)); + } + + @Test + public void canSpecifyPathogenicitySources() { + Set sources = EnumSet.allOf(PathogenicitySource.class); + Analysis instance = newBuilder() + .pathogenicitySources(sources) + .build(); + assertThat(instance.getPathogenicitySources(), equalTo(sources)); + } + + @Test + public void testGetAnalysisSteps_ReturnsEmptyListWhenNoStepsHaveBeedAdded() { + List steps = Collections.emptyList(); + assertThat(DEFAULT_ANALYSIS.getAnalysisSteps(), equalTo(steps)); + } + + @Test + public void testCanAddVariantFilterAsAnAnalysisStep() { + VariantFilter variantFilter = new PassAllVariantEffectsFilter(); + Analysis instance = newBuilder() + .addStep(variantFilter) + .build(); + assertThat(instance.getAnalysisSteps(), hasItem(variantFilter)); + } + + @Test + public void testCanAddGeneFilterAsAnAnalysisStep() { + GeneFilter geneFilter = new InheritanceFilter(ModeOfInheritance.ANY); + Analysis instance = newBuilder() + .addStep(geneFilter) + .build(); + assertThat(instance.getAnalysisSteps(), hasItem(geneFilter)); + } + + @Test + public void testCanAddPrioritiserAsAnAnalysisStep() { + Prioritiser prioritiser = new NoneTypePrioritiser(); + Analysis instance = newBuilder() + .addStep(prioritiser) + .build(); + assertThat(instance.getAnalysisSteps(), hasItem(prioritiser)); + } + + @Test + public void testGetAnalysisSteps_ReturnsListOfStepsAdded() { + List steps = getAnalysisSteps(); + + Analysis.Builder builder = newBuilder(); + steps.forEach(builder::addStep); + + Analysis instance = builder.build(); + + assertThat(instance.getAnalysisSteps(), equalTo(steps)); + } + + @Test + public void testBuilderCanSetAllSteps() { + List steps = getAnalysisSteps(); + + Analysis instance = newBuilder() + .steps(steps) + .build(); + + assertThat(instance.getAnalysisSteps(), equalTo(steps)); + } + + @Test + public void testCopyReturnsBuilder() { + Analysis.Builder analysisBuilder = DEFAULT_ANALYSIS.copy(); + Analysis copy = analysisBuilder.build(); + assertThat(copy, equalTo(DEFAULT_ANALYSIS)); + } + + @Test + public void testCopyBuilderCanChangeFrequencySources() { + Analysis.Builder analysisBuilder = DEFAULT_ANALYSIS.copy(); + Analysis copy = analysisBuilder + .frequencySources(EnumSet.of(FrequencySource.ESP_ALL)) + .build(); + assertThat(copy.getFrequencySources(), equalTo(EnumSet.of(FrequencySource.ESP_ALL))); + } + + @Test + public void testCopyBuilderCanAddNewAnalysisStep() { + // this is likely a nonsense thing to do - the order of the steps is important so copying and adding a new + // one is probably a silly thing to do. + Analysis copy = DEFAULT_ANALYSIS.copy() + .addStep(new NoneTypePrioritiser()) + .build(); + } + + @Test + public void testCopyBuilderCanSetAnalysisSteps() { + List newSteps = getAnalysisSteps(); + Analysis copy = DEFAULT_ANALYSIS.copy() + .steps(newSteps) + .build(); + assertThat(copy.getAnalysisSteps(), equalTo(newSteps)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/PassOnlyAnalysisRunnerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/PassOnlyAnalysisRunnerTest.java new file mode 100644 index 000000000..f24efb242 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/PassOnlyAnalysisRunnerTest.java @@ -0,0 +1,397 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.model.FilterStatus; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.MockPrioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.nio.file.Paths; +import java.util.HashMap; +import java.util.Map; + +import static org.hamcrest.CoreMatchers.*; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class PassOnlyAnalysisRunnerTest extends AnalysisRunnerTestBase { + + private final PassOnlyAnalysisRunner instance = new PassOnlyAnalysisRunner(geneFactory, variantFactory, stubDataService); + + @Test + public void testRunAnalysis_NoFiltersNoPrioritisers() { + Analysis analysis = makeAnalysis(vcfPath); + + AnalysisResults analysisResults = instance.run(analysis); + + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + for (Gene gene : analysisResults.getGenes()) { + assertThat(gene.passedFilters(), is(true)); + for (VariantEvaluation variantEvaluation : gene.getVariantEvaluations()) { + assertThat(variantEvaluation.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); + } + } + } + + @Test + public void testRunAnalysis_VariantFilterOnly_OneVariantPasses() { + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + + Analysis analysis = makeAnalysis(vcfPath, intervalFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Gene passedGene = analysisResults.getGenes().get(0); + assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); + assertThat(passedGene.getNumberOfVariants(), equalTo(1)); + } + + @Test + public void testRunAnalysis_FailVariantFilterOnly_OneVariantPasses() { + VariantFilter failedVariantFilter = new FailedVariantFilter(); + + Analysis analysis = makeAnalysis(Paths.get("src/test/resources/failedVariant.vcf"), failedVariantFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Gene passedGene = analysisResults.getGenes().get(0); + assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); + assertThat(passedGene.getNumberOfVariants(), equalTo(1)); + //For the PassOnlyAnalysisRunner the resulting genes should only contain passed variants + assertThat(passedGene.getVariantEvaluations(), equalTo(passedGene.getPassedVariantEvaluations())); + + VariantEvaluation passedVariant = passedGene.getPassedVariantEvaluations().get(0); + //1 145508800 rs12345678 T C 123.15 PASS GENE=RBM8A GT:DP 1/1:33 + assertThat(passedVariant.getChromosome(), equalTo(1)); + assertThat(passedVariant.getPosition(), equalTo(145508800)); + assertThat(passedVariant.getRef(), equalTo("T")); + assertThat(passedVariant.getAlt(), equalTo("C")); + } + + @Test + public void testRunAnalysis_TwoVariantFilters_AllVariantsFail() { + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + VariantFilter qualityFilter = new QualityFilter(9999999f); + + Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().isEmpty(), is(true)); + assertThat(analysisResults.getVariantEvaluations().isEmpty(), is(true)); + } + + @Test + public void testRunAnalysis_TwoVariantFiltersOnePrioritiser() { + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + VariantFilter qualityFilter = new QualityFilter(120); + Map hiPhiveGeneScores = new HashMap<>(); + hiPhiveGeneScores.put("GNRHR2", 0.75f); + hiPhiveGeneScores.put("RBM8A", 0.65f); + Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); + + Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter, mockHiPhivePrioritiser); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(true)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(1)); + assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); + + VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); + assertThat(rbm8Variant1.passedFilters(), is(true)); + assertThat(rbm8Variant1.passedFilter(FilterType.INTERVAL_FILTER), is(true)); + assertThat(rbm8Variant1.passedFilter(FilterType.QUALITY_FILTER), is(true)); + } + + @Test(expected = SampleMismatchException.class) + public void testRunAnalysisWhenProbandSampleNameIsNotInSingleSampleVcf() { + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .probandSampleName("mickyMouse") + .build(); + instance.run(analysis); + } + + @Test + public void testRunAnalysisWhenProbandSampleNameIsNotSpecifiedAndHaveSingleSampleVcf() { + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .build(); + instance.run(analysis); + } + + @Test(expected = SampleMismatchException.class) + public void testRunAnalysisWhenProbandSampleNameIsNotInMultiSampleVcf() { + Analysis analysis = Analysis.builder() + .vcfPath(inheritanceFilterVCFPath) + .probandSampleName("mickyMouse") + .build(); + instance.run(analysis); + } + + @Test + public void testRunAnalysis_TwoVariantFiltersOnePrioritiserRecessiveInheritanceFilter() { + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + VariantFilter qualityFilter = new QualityFilter(120); + Map hiPhiveGeneScores = new HashMap<>(); + hiPhiveGeneScores.put("GNRHR2", 0.75f); + hiPhiveGeneScores.put("RBM8A", 0.65f); + Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); + GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .addStep(intervalFilter) + .addStep(qualityFilter) + .addStep(mockHiPhivePrioritiser) + .addStep(inheritanceFilter) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(true)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(1)); + assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); + + VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(0); + assertThat(rbm8Variant2.passedFilters(), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); + } + + @Test + public void testRunAnalysis_PrioritiserAndPriorityScoreFilterOnly() { + Float desiredPrioritiserScore = 0.9f; + Map geneSymbolPrioritiserScores = new HashMap<>(); + geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); + + PriorityType prioritiserTypeToMock = PriorityType.HIPHIVE_PRIORITY; + Prioritiser prioritiser = new MockPrioritiser(prioritiserTypeToMock, geneSymbolPrioritiserScores); + GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); + + Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene passedGene = results.get("RBM8A"); + assertThat(passedGene.passedFilters(), is(true)); + assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); + assertThat(passedGene.getPriorityScore(), equalTo(desiredPrioritiserScore)); + } + + @Test + public void testRunAnalysis_PrioritiserPriorityScoreFilterVariantFilter() { + Float desiredPrioritiserScore = 0.9f; + Map geneSymbolPrioritiserScores = new HashMap<>(); + geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); + + PriorityType prioritiserTypeToMock = PriorityType.HIPHIVE_PRIORITY; + Prioritiser prioritiser = new MockPrioritiser(prioritiserTypeToMock, geneSymbolPrioritiserScores); + GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + + Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter, intervalFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene passedGene = results.get("RBM8A"); + assertThat(passedGene.passedFilters(), is(true)); + assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); + assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); + assertThat(passedGene.getPriorityScore(), equalTo(desiredPrioritiserScore)); + assertThat(passedGene.getNumberOfVariants(), equalTo(1)); + + VariantEvaluation rbm8Variant2 = passedGene.getVariantEvaluations().get(0); + assertThat(rbm8Variant2.passedFilters(), is(true)); + assertThat(rbm8Variant2.getChromosome(), equalTo(1)); + assertThat(rbm8Variant2.getPosition(), equalTo(145508800)); + assertThat(rbm8Variant2.getGeneSymbol(), equalTo(passedGene.getGeneSymbol())); + } + + @Test + public void testRunAnalysis_VariantFilterPrioritiserPriorityScoreFilterVariantFilter() { + Float desiredPrioritiserScore = 0.9f; + Map geneSymbolPrioritiserScores = new HashMap<>(); + geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); + + VariantFilter qualityFilter = new QualityFilter(120); + PriorityType prioritiserTypeToMock = PriorityType.HIPHIVE_PRIORITY; + Prioritiser prioritiser = new MockPrioritiser(prioritiserTypeToMock, geneSymbolPrioritiserScores); + GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .addStep(qualityFilter) + .addStep(prioritiser) + .addStep(priorityScoreFilter) + .addStep(intervalFilter) + .addStep(inheritanceFilter) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene passedGene = results.get("RBM8A"); + assertThat(passedGene.passedFilters(), is(true)); + assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); + assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); + assertThat(passedGene.getPriorityScore(), equalTo(desiredPrioritiserScore)); + assertThat(passedGene.getNumberOfVariants(), equalTo(1)); + + VariantEvaluation rbm8Variant2 = passedGene.getVariantEvaluations().get(0); + assertThat(rbm8Variant2.passedFilters(), is(true)); + assertThat(rbm8Variant2.getChromosome(), equalTo(1)); + assertThat(rbm8Variant2.getPosition(), equalTo(145508800)); + assertThat(rbm8Variant2.getGeneSymbol(), equalTo(passedGene.getGeneSymbol())); + assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); + } + + @Test + public void testRunAnalysis_autosomalDominantTrioDeNovoInheritanceFilter() { + VariantFilter qualityFilter = new QualityFilter(5); + InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT); + Analysis analysis = Analysis.builder() + .vcfPath(inheritanceFilterVCFPath) + .pedPath(childAffectedPedPath) + .probandSampleName("Seth") + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT) + .addStep(qualityFilter) + .addStep(inheritanceFilter) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Map results = makeResults(analysisResults.getGenes()); + Gene passedGene = results.get("GNRHR2"); + assertThat(passedGene.passedFilters(), is(true)); + assertThat(passedGene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(passedGene.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + assertThat(passedGene.getEntrezGeneID(), equalTo(114814)); + assertThat(passedGene.getGeneSymbol(), equalTo("GNRHR2")); + assertThat(passedGene.getNumberOfVariants(), equalTo(1)); + assertThat(passedGene.getVariantEvaluations().get(0).getPosition(), equalTo(145510000)); + + } + + @Test + public void testRunAnalysis_autosomalDominantTrioSharedInheritanceFilter() { + VariantFilter qualityFilter = new QualityFilter(5); + InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT); + Analysis analysis = Analysis.builder() + .vcfPath(inheritanceFilterVCFPath) + .pedPath(twoAffectedPedPath) + .probandSampleName("Seth") + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT) + .addStep(qualityFilter) + .addStep(inheritanceFilter) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(1)); + + Map results = makeResults(analysisResults.getGenes()); + Gene passedGene = results.get("RBM8A"); + assertThat(passedGene.passedFilters(), is(true)); + assertThat(passedGene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(passedGene.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); + assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); + assertThat(passedGene.getNumberOfVariants(), equalTo(1)); + assertThat(passedGene.getVariantEvaluations().get(0).getPosition(), equalTo(123256214)); + + } + + @Test + public void testRunAnalysis_autosomalRecessiveTrioInheritanceFilter() { + VariantFilter qualityFilter = new QualityFilter(5); + InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + Analysis analysis = Analysis.builder() + .vcfPath(inheritanceFilterVCFPath) + .pedPath(childAffectedPedPath) + .probandSampleName("Seth") + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .addStep(qualityFilter) + .addStep(inheritanceFilter) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + + Map results = makeResults(analysisResults.getGenes()); + //CompoundHeterozygous + Gene passedGene = results.get("RBM8A"); + assertThat(passedGene.passedFilters(), is(true)); + assertThat(passedGene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + assertThat(passedGene.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); + assertThat(passedGene.getEntrezGeneID(), equalTo(9939)); + assertThat(passedGene.getGeneSymbol(), equalTo("RBM8A")); + assertThat(passedGene.getNumberOfVariants(), equalTo(2)); + assertThat(passedGene.getVariantEvaluations().get(0).getPosition(), equalTo(123256214)); + assertThat(passedGene.getVariantEvaluations().get(1).getPosition(), equalTo(145508800)); + + //Homozygous + passedGene = results.get("FGFR2"); + assertThat(passedGene.passedFilters(), is(true)); + assertThat(passedGene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + assertThat(passedGene.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); + assertThat(passedGene.getEntrezGeneID(), equalTo(2263)); + assertThat(passedGene.getGeneSymbol(), equalTo("FGFR2")); + assertThat(passedGene.getNumberOfVariants(), equalTo(1)); + assertThat(passedGene.getVariantEvaluations().get(0).getPosition(), equalTo(123239370)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SettingsParserTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SettingsParserTest.java new file mode 100644 index 000000000..0eabefa59 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SettingsParserTest.java @@ -0,0 +1,237 @@ + +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import com.google.common.collect.ImmutableList; +import com.google.common.collect.Lists; +import com.google.common.collect.Sets; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.genome.VariantDataServiceStub; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.NoneTypePrioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.NoneTypePriorityFactoryStub; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactory; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.HashSet; +import java.util.List; +import java.util.Set; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; +import static org.monarchinitiative.exomiser.core.analysis.SettingsParser.NON_EXONIC_VARIANT_EFFECTS; + +/** +* +* @author Jules Jacobsen +*/ +public class SettingsParserTest { + + private static final Set DEFAULT_PATH_SCORES = Sets.immutableEnumSet(PathogenicitySource.POLYPHEN, PathogenicitySource.MUTATION_TASTER, PathogenicitySource.SIFT); + + private SettingsParser instance; + + private final PriorityFactory stubPriorityFactory = new NoneTypePriorityFactoryStub(); + + @Before + public void setUp() { + instance = new SettingsParser(stubPriorityFactory, new VariantDataServiceStub()); + } + + private Analysis.Builder analysisBuilder() { + return Analysis.builder() + .analysisMode(AnalysisMode.SPARSE) + .vcfPath(Paths.get("vcf")) + .frequencySources(FrequencySource.ALL_EXTERNAL_FREQ_SOURCES) + .pathogenicitySources(DEFAULT_PATH_SCORES); + } + + private SettingsBuilder settingsBuilder() { + return Settings.builder() + .vcfFilePath(Paths.get("vcf")); + } + + private List defaultAnalysisSteps() { + return ImmutableList.of( + new VariantEffectFilter(NON_EXONIC_VARIANT_EFFECTS), + new FrequencyFilter(100f), + new PathogenicityFilter(false)); + } + + @Test + public void testCanSpecifyPedFilePath() { + Path pedpath = Paths.get("testPed.ped"); + Settings settings = settingsBuilder().pedFilePath(pedpath).build(); + Analysis result = instance.parse(settings); + assertThat(result.getPedPath(), equalTo(pedpath)); + } + + @Test + public void testCanSpecifyProbandSampleName() { + String probandSampleName = "Nemo"; + Settings settings = settingsBuilder().probandSampleName(probandSampleName).build(); + Analysis result = instance.parse(settings); + assertThat(result.getProbandSampleName(), equalTo(probandSampleName)); + } + + @Test + public void testDefaultAnalysisModeIsSparse() { + Analysis result = instance.parse(settingsBuilder().build()); + assertThat(result.getAnalysisMode(), equalTo(AnalysisMode.SPARSE)); + } + + @Test + public void testCanSpecifyNotFullAnalysisMode() { + Analysis result = instance.parse(settingsBuilder().runFullAnalysis(false).build()); + assertThat(result.getAnalysisMode(), equalTo(AnalysisMode.SPARSE)); + } + + @Test + public void testCanSpecifyFullAnalysisMode() { + Analysis result = instance.parse(settingsBuilder().runFullAnalysis(true).build()); + assertThat(result.getAnalysisMode(), equalTo(AnalysisMode.FULL)); + } + + @Test + public void testDefaultFrequencyDataSources() { + Analysis result = instance.parse(settingsBuilder().build()); + assertThat(result.getFrequencySources(), equalTo(FrequencySource.ALL_EXTERNAL_FREQ_SOURCES)); + } + + @Test + public void testDefaultPathogenicityDataSources() { + Analysis result = instance.parse(settingsBuilder().build()); + assertThat(result.getPathogenicitySources(), equalTo(DEFAULT_PATH_SCORES)); + } + + @Test + public void testDefaultAnalysisIsTargetFrequencyAndPathogenicityFilters() { + Settings settings = settingsBuilder().build(); + + Analysis analysis = analysisBuilder().steps(defaultAnalysisSteps()).build(); + + Analysis result = instance.parse(settings); + assertThat(result, equalTo(analysis)); + } + + @Test + public void testSpecifyingInheritanceModeAddsAnInheritanceFilter() { + + Settings settings = settingsBuilder() + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT) + .build(); + + Analysis analysis = analysisBuilder() + .steps(defaultAnalysisSteps()) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_DOMINANT) + .addStep(new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_DOMINANT)) + .build(); + + Analysis result = instance.parse(settings); + assertThat(result, equalTo(analysis)); + + } + + @Test + public void testCanMakeAllTypesOfFilter() { + //make a new Settings object specifying a Pathogenicity, Frequency, Quality and Interval filters + Set geneIdsToKeep = new HashSet<>(); + geneIdsToKeep.add(1); + GeneticInterval interval = new GeneticInterval(2, 12345, 67890); + + Settings settings = settingsBuilder() + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .genesToKeep(geneIdsToKeep) + .keepNonPathogenic(true) + .removeFailed(true) + .removeKnownVariants(true) + .maximumFrequency(0.25f) + .minimumQuality(2f) + .geneticInterval(interval) + .build(); + + Analysis analysis = analysisBuilder() + .addStep(new FailedVariantFilter()) + .addStep(new EntrezGeneIdFilter(geneIdsToKeep)) + .addStep(new IntervalFilter(interval)) + .addStep(new VariantEffectFilter(NON_EXONIC_VARIANT_EFFECTS)) + .addStep(new QualityFilter(2f)) + .addStep(new KnownVariantFilter()) + .addStep(new FrequencyFilter(0.25f)) + .addStep(new PathogenicityFilter(true)) + .addStep(new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE)) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .build(); + + Analysis result = instance.parse(settings); + assertThat(result, equalTo(analysis)); + } + + @Test + public void testSpecifyingOmimPrioritiserOnlyAddsOmimPrioritiser() { + + Settings settings = settingsBuilder() + .usePrioritiser(PriorityType.OMIM_PRIORITY) + .build(); + + Analysis analysis = analysisBuilder() + .steps(defaultAnalysisSteps()) + .addStep(stubPriorityFactory.makeOmimPrioritiser()) + .build(); + + Analysis result = instance.parse(settings); + assertThat(result, equalTo(analysis)); + + } + + @Test + public void testSpecifyingPrioritiserAddsAnOmimAndTheSpecifiedPrioritiser() { + + List hpoIds = Lists.newArrayList("HP:000001", "HP:000002", "HP:000003"); + + Settings settings = settingsBuilder() + .usePrioritiser(PriorityType.PHIVE_PRIORITY) + .hpoIdList(hpoIds) + .build(); + + Analysis analysis = analysisBuilder() + .hpoIds(hpoIds) + .steps(defaultAnalysisSteps()) + .addStep(stubPriorityFactory.makeOmimPrioritiser()) + .addStep(new NoneTypePrioritiser()) + .build(); + + System.out.println(analysis); + + Analysis result = instance.parse(settings); + assertThat(result, equalTo(analysis)); + } + +} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SettingsTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SettingsTest.java similarity index 85% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SettingsTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SettingsTest.java index efa21fe76..cad4bda72 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SettingsTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SettingsTest.java @@ -1,52 +1,48 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.analysis; +package org.monarchinitiative.exomiser.core.analysis; import com.fasterxml.jackson.core.JsonProcessingException; import com.fasterxml.jackson.databind.DeserializationFeature; import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.SerializationFeature; -import de.charite.compbio.exomiser.core.analysis.Settings.SettingsBuilder; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Settings.SettingsBuilder; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; + import java.io.IOException; import java.nio.file.Path; import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.EnumSet; -import java.util.List; -import java.util.Set; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.instanceOf; -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.CoreMatchers.nullValue; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.Test; +import java.util.*; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; /** - * Tests for {@link de.charite.compbio.exomiser.core.analysis.Settings}. + * Tests for {@link Settings}. * * @author Jules Jacobsen */ @@ -65,7 +61,9 @@ public class SettingsTest { private static final Path VCF_PATH = Paths.get("data/test.vcf"); private static final Path PED_PATH_NOT_SET = null; private static final Path PED_PATH = Paths.get("data/test.ped"); - + private static final String PROBAND_SAMPLE_NAME_NOT_SET = ""; + private static final String PROBAND_SAMPLE_NAME = "Nemo"; + //filter settings private static final boolean RUN_FULL_ANALYSIS_DEFAULT = false; private static final boolean RUN_FULL_ANALYSIS = true; @@ -75,8 +73,8 @@ public class SettingsTest { private static final float MIMIMUM_QUALITY = 666.24f; private static final GeneticInterval GENETIC_INTERVAL_DEFAULT = null; private static final GeneticInterval GENETIC_INTERVAL = new GeneticInterval((byte) 2, 12345, 67890); - private static final boolean REMOVE_PATHOGENIC_FILTER_CUTOFF_DEFAULT = false; - private static final boolean REMOVE_PATHOGENIC_FILTER_CUTOFF = true; + private static final boolean KEEP_NON_PATHOGENIC_VARIANTS_DEFAULT = false; + private static final boolean KEEP_NON_PATHOGENIC_VARIANTS = true; private static final boolean REMOVE_KNOWN_VARIANTS_DEFAULT = false; private static final boolean REMOVE_KNOWN_VARIANTS = true; private static final boolean KEEP_OFF_TARGET_VARIANTS_DEFAULT = false; @@ -84,7 +82,7 @@ public class SettingsTest { private static final String CANDIDATE_GENE_NAME_DEFAULT = ""; private static final String CANDIDATE_GENE_NAME = "ADH1"; private static final ModeOfInheritance MODE_OF_INHERITANCE = ModeOfInheritance.AUTOSOMAL_DOMINANT; - private static final ModeOfInheritance MODE_OF_INHERITANCE_DEFAULT = ModeOfInheritance.UNINITIALIZED; + private static final ModeOfInheritance MODE_OF_INHERITANCE_DEFAULT = ModeOfInheritance.ANY; //prioritiser settings private static final PriorityType PRIORITISER_DEFAULT = PriorityType.NONE; @@ -112,22 +110,23 @@ public SettingsTest() { @Before public void setUp() { - instance = new SettingsBuilder(); + instance = Settings.builder(); instance.vcfFilePath(VCF_PATH); } @Test public void testThatTheBuilderProducesDefaultExomiserSettingsObject() { - Settings settings = new SettingsBuilder().build(); + Settings settings = Settings.builder().build(); assertThat(settings, instanceOf(Settings.class)); System.out.println(settings); assertThat(settings.getVcfPath(), equalTo(VCF_PATH_NOT_SET)); assertThat(settings.getPedPath(), equalTo(PED_PATH_NOT_SET)); + assertThat(settings.getProbandSampleName(), equalTo(PROBAND_SAMPLE_NAME_NOT_SET)); assertThat(settings.getPrioritiserType(), equalTo(PRIORITISER_DEFAULT)); assertThat(settings.getMaximumFrequency(), equalTo(MAXIMUM_FREQUENCY_DEFAULT)); assertThat(settings.getMinimumQuality(), equalTo(MIMIMUM_QUALITY_DEFAULT)); assertThat(settings.getGeneticInterval(), equalTo(GENETIC_INTERVAL_DEFAULT)); - assertThat(settings.removePathFilterCutOff(), is(REMOVE_PATHOGENIC_FILTER_CUTOFF_DEFAULT)); + assertThat(settings.keepNonPathogenicVariants(), is(KEEP_NON_PATHOGENIC_VARIANTS_DEFAULT)); assertThat(settings.removeKnownVariants(), is(REMOVE_KNOWN_VARIANTS_DEFAULT)); assertThat(settings.keepOffTargetVariants(), is(KEEP_OFF_TARGET_VARIANTS_DEFAULT)); assertThat(settings.getCandidateGene(), equalTo(CANDIDATE_GENE_NAME_DEFAULT)); @@ -185,19 +184,19 @@ public void testThatGetVcfPathReturnsAPath() { */ @Test public void testThatTheDefaultVcfPathIsNull() { - Settings settings = new SettingsBuilder().build(); + Settings settings = Settings.builder().build(); assertThat(settings.getVcfPath(), nullValue()); } @Test public void testThatTheDefaultSettingsIsNotValid() { - Settings settings = new SettingsBuilder().build(); + Settings settings = Settings.builder().build(); assertThat(settings.isValid(), is(false)); } @Test public void testThatJustSettingAFcvFileIsValid() { - SettingsBuilder settingsBuilder = new SettingsBuilder(); + SettingsBuilder settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(VCF_PATH); Settings settings = settingsBuilder.build(); assertThat(settings.isValid(), is(true)); @@ -205,7 +204,7 @@ public void testThatJustSettingAFcvFileIsValid() { @Test public void testThatTheMinimumRequiredValidSettingsIsAFcvFileAndPrioritiser() { - SettingsBuilder settingsBuilder = new SettingsBuilder(); + SettingsBuilder settingsBuilder = Settings.builder(); settingsBuilder.vcfFilePath(VCF_PATH); settingsBuilder.usePrioritiser(PriorityType.OMIM_PRIORITY); Settings settings = settingsBuilder.build(); @@ -224,12 +223,19 @@ public void testThatGetPedPathReturnsAPath() { assertThat(settings.getPedPath(), equalTo(PED_PATH)); } + @Test + public void testCanSetProbandSampleName() { + instance.probandSampleName("Wibble"); + Settings settings = instance.build(); + assertThat(settings.getProbandSampleName(), equalTo("Wibble")); + } + /** * Test of getPrioritiserType method, of class ExomiserSettings. */ @Test public void testThatBuilderProducesPriorityTypeNoneAsDefault() { - Settings settings = new SettingsBuilder().build(); + Settings settings = Settings.builder().build(); assertThat(settings.getPrioritiserType(), equalTo(PriorityType.NONE)); } @@ -300,14 +306,14 @@ public void testThatBuilderProducesGeneticIntervalSpecified() { @Test public void testThatBuilderProducesIncludePathogenicDefault() { Settings settings = instance.build(); - assertThat(settings.removePathFilterCutOff(), is(REMOVE_PATHOGENIC_FILTER_CUTOFF_DEFAULT)); + assertThat(settings.keepNonPathogenicVariants(), is(KEEP_NON_PATHOGENIC_VARIANTS_DEFAULT)); } @Test public void testThatBuilderProducesIncludePathogenicWhenSet() { - instance.removePathFilterCutOff(REMOVE_PATHOGENIC_FILTER_CUTOFF); + instance.keepNonPathogenic(KEEP_NON_PATHOGENIC_VARIANTS); Settings settings = instance.build(); - assertThat(settings.removePathFilterCutOff(), is(REMOVE_PATHOGENIC_FILTER_CUTOFF)); + assertThat(settings.keepNonPathogenicVariants(), is(KEEP_NON_PATHOGENIC_VARIANTS)); } @Test @@ -453,7 +459,7 @@ public void testThatBuilderProducesSetNumberOfGenesToShow() { */ @Test public void testThatBuilderProducesDefaultOutFileName() { - Settings settings = new SettingsBuilder().build(); + Settings settings = Settings.builder().build(); assertThat(settings.getOutputPrefix(), equalTo(OUTPUT_PREFIX_DEFAULT)); } @@ -498,11 +504,12 @@ public void testThatBuilderCanSetAllValues() { instance.vcfFilePath(VCF_PATH) .pedFilePath(PED_PATH) + .probandSampleName(PROBAND_SAMPLE_NAME) .usePrioritiser(PriorityType.OMIM_PRIORITY) .maximumFrequency(MAXIMUM_FREQUENCY) .minimumQuality(MIMIMUM_QUALITY) .geneticInterval(GENETIC_INTERVAL) - .removePathFilterCutOff(REMOVE_PATHOGENIC_FILTER_CUTOFF) + .keepNonPathogenic(KEEP_NON_PATHOGENIC_VARIANTS) .removeKnownVariants(REMOVE_KNOWN_VARIANTS) .keepOffTargetVariants(KEEP_OFF_TARGET_VARIANTS) .candidateGene(CANDIDATE_GENE_NAME) @@ -520,11 +527,12 @@ public void testThatBuilderCanSetAllValues() { assertThat(settings.getVcfPath(), equalTo(VCF_PATH)); assertThat(settings.getPedPath(), equalTo(PED_PATH)); + assertThat(settings.getProbandSampleName(), equalTo(PROBAND_SAMPLE_NAME)); assertThat(settings.getPrioritiserType(), equalTo(PriorityType.OMIM_PRIORITY)); assertThat(settings.getMaximumFrequency(), equalTo(MAXIMUM_FREQUENCY)); assertThat(settings.getMinimumQuality(), equalTo(MIMIMUM_QUALITY)); assertThat(settings.getGeneticInterval(), equalTo(GENETIC_INTERVAL)); - assertThat(settings.removePathFilterCutOff(), is(REMOVE_PATHOGENIC_FILTER_CUTOFF)); + assertThat(settings.keepNonPathogenicVariants(), is(KEEP_NON_PATHOGENIC_VARIANTS)); assertThat(settings.removeKnownVariants(), is(REMOVE_KNOWN_VARIANTS)); assertThat(settings.keepOffTargetVariants(), is(KEEP_OFF_TARGET_VARIANTS)); assertThat(settings.getCandidateGene(), equalTo(CANDIDATE_GENE_NAME)); @@ -560,7 +568,7 @@ public void testThatBuilderCanSetSomeValuesAndOthersRemainAsDefault() { assertThat(settings.getMaximumFrequency(), equalTo(MAXIMUM_FREQUENCY)); assertThat(settings.getMinimumQuality(), equalTo(MIMIMUM_QUALITY_DEFAULT)); assertThat(settings.getGeneticInterval(), equalTo(GENETIC_INTERVAL_DEFAULT)); - assertThat(settings.removePathFilterCutOff(), is(REMOVE_PATHOGENIC_FILTER_CUTOFF_DEFAULT)); + assertThat(settings.keepNonPathogenicVariants(), is(KEEP_NON_PATHOGENIC_VARIANTS_DEFAULT)); assertThat(settings.removeKnownVariants(), is(REMOVE_KNOWN_VARIANTS_DEFAULT)); assertThat(settings.keepOffTargetVariants(), is(KEEP_OFF_TARGET_VARIANTS_DEFAULT)); assertThat(settings.getCandidateGene(), equalTo(CANDIDATE_GENE_NAME_DEFAULT)); @@ -595,7 +603,7 @@ public void testJsonWrite() { public void testJsonRead() { ObjectMapper mapper = new ObjectMapper(); mapper.configure(DeserializationFeature.READ_ENUMS_USING_TO_STRING, true); - String jsonString = "{\"prioritiser\":\"phive\",\"maxFrequency\":0.1,\"minQuality\":0.0,\"keepNonPathogenic\":false,\"removeKnownVariants\":false,\"keep-off-target\":false,\"candidate-gene\":\"FGFR2\",\"inheritance-mode\":\"AUTOSOMAL_DOMINANT\",\"disease-id\":\"\",\"hpo-ids\":[\"HP:0987654\",\"HP:1234567\"],\"seed-genes\":[123,4567],\"num-genes\":0,\"out-prefix\":\"wibble\",\"out-format\":[\"HTML\"],\"vcf\":\"/src/test/resources/Pfeiffer.vcf\",\"ped\":null}"; + String jsonString = "{\"prioritiser\":\"PHIVE_PRIORITY\",\"maxFrequency\":0.1,\"minQuality\":0.0,\"keepNonPathogenic\":false,\"removeKnownVariants\":false,\"keepOffTarget\":false,\"candidateGene\":\"FGFR2\",\"modeOfInheritance\":\"AUTOSOMAL_DOMINANT\",\"diseaseId\":\"\",\"hpoIds\":[\"HP:0987654\",\"HP:1234567\"],\"seedGeneList\":[123,4567],\"numberOfGenesToShow\":0,\"outputPrefix\":\"wibble\",\"outputFormats\":[\"HTML\"],\"vcf\":\"/src/test/resources/Pfeiffer.vcf\",\"ped\":null}"; try { Settings defaultSettings = mapper.readValue(jsonString, Settings.class); System.out.println(defaultSettings); diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SimpleAnalysisRunnerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SimpleAnalysisRunnerTest.java similarity index 76% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SimpleAnalysisRunnerTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SimpleAnalysisRunnerTest.java index e0102c693..82a897be0 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/SimpleAnalysisRunnerTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SimpleAnalysisRunnerTest.java @@ -1,44 +1,41 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.analysis; - -import de.charite.compbio.exomiser.core.filters.*; -import de.charite.compbio.exomiser.core.model.FilterStatus; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.MockPrioritiser; -import de.charite.compbio.exomiser.core.prioritisers.Prioritiser; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import java.util.EnumSet; -import org.junit.Before; +package org.monarchinitiative.exomiser.core.analysis; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.model.FilterStatus; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.MockPrioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import java.util.EnumSet; import java.util.HashMap; import java.util.Map; -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.hasItem; -import static org.hamcrest.CoreMatchers.is; +import static org.hamcrest.CoreMatchers.*; import static org.hamcrest.MatcherAssert.assertThat; /** @@ -47,23 +44,16 @@ */ public class SimpleAnalysisRunnerTest extends AnalysisRunnerTestBase { - private SimpleAnalysisRunner instance; - - @Before - public void setUp() { - instance = new SimpleAnalysisRunner(sampleDataFactory, stubDataService); - } + private final SimpleAnalysisRunner instance = new SimpleAnalysisRunner(geneFactory, variantFactory, stubDataService); @Test public void testRunAnalysis_NoFiltersNoPrioritisers() { Analysis analysis = makeAnalysis(vcfPath); - - instance.runAnalysis(analysis); - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - for (Gene gene : sampleData.getGenes()) { + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + for (Gene gene : analysisResults.getGenes()) { assertThat(gene.passedFilters(), is(true)); for (VariantEvaluation variantEvaluation : gene.getVariantEvaluations()) { assertThat(variantEvaluation.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); @@ -76,13 +66,11 @@ public void testRunAnalysis_VariantFilterOnly_OneVariantPasses() { VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); Analysis analysis = makeAnalysis(vcfPath, intervalFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); - Map results = makeResults(sampleData.getGenes()); + Map results = makeResults(analysisResults.getGenes()); Gene gnrh2 = results.get("GNRHR2"); assertThat(gnrh2.passedFilters(), is(false)); @@ -106,13 +94,11 @@ public void testRunAnalysis_TwoVariantFilters_AllVariantsFailFilters_VariantsSho VariantFilter qualityFilter = new QualityFilter(9999999f); Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter); - instance.runAnalysis(analysis); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); + Map results = makeResults(analysisResults.getGenes()); Gene gnrh2 = results.get("GNRHR2"); assertThat(gnrh2.passedFilters(), is(false)); @@ -146,13 +132,11 @@ public void testRunAnalysis_TwoVariantFiltersOnePrioritiser_VariantsShouldHaveAl Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter, mockHiPhivePrioritiser); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); - Map results = makeResults(sampleData.getGenes()); + Map results = makeResults(analysisResults.getGenes()); Gene gnrh2 = results.get("GNRHR2"); assertThat(gnrh2.passedFilters(), is(false)); @@ -187,15 +171,19 @@ public void testRunAnalysis_TwoVariantFiltersOnePrioritiserRecessiveInheritanceF Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter, mockHiPhivePrioritiser, inheritanceFilter); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .addStep(intervalFilter) + .addStep(qualityFilter) + .addStep(mockHiPhivePrioritiser) + .addStep(inheritanceFilter) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); - Map results = makeResults(sampleData.getGenes()); + Map results = makeResults(analysisResults.getGenes()); Gene gnrh2 = results.get("GNRHR2"); assertThat(gnrh2.passedFilters(), is(false)); @@ -235,13 +223,11 @@ public void testRunAnalysis_PrioritiserAndPriorityScoreFilterOnly() { GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter); - instance.runAnalysis(analysis); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); - - Map results = makeResults(sampleData.getGenes()); + Map results = makeResults(analysisResults.getGenes()); Gene gnrh2 = results.get("GNRHR2"); assertThat(gnrh2.passedFilters(), is(false)); @@ -279,13 +265,11 @@ public void testRunAnalysis_PrioritiserPriorityScoreFilterVariantFilter() { VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter, intervalFilter); - instance.runAnalysis(analysis); - - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); - Map results = makeResults(sampleData.getGenes()); + Map results = makeResults(analysisResults.getGenes()); Gene gnrh2 = results.get("GNRHR2"); assertThat(gnrh2.passedFilters(), is(false)); @@ -324,16 +308,21 @@ public void testRunAnalysis_VariantFilterPrioritiserPriorityScoreFilterVariantFi VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - Analysis analysis = makeAnalysis(vcfPath, qualityFilter, prioritiser, priorityScoreFilter, intervalFilter, inheritanceFilter); - analysis.setModeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE); - instance.runAnalysis(analysis); - + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .addStep(qualityFilter) + .addStep(prioritiser) + .addStep(priorityScoreFilter) + .addStep(intervalFilter) + .addStep(inheritanceFilter) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .build(); //TODO: remove all this repetitive cruft into common method - SampleData sampleData = analysis.getSampleData(); - printResults(sampleData); - assertThat(sampleData.getGenes().size(), equalTo(2)); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); - Map results = makeResults(sampleData.getGenes()); + Map results = makeResults(analysisResults.getGenes()); Gene gnrh2 = results.get("GNRHR2"); assertThat(gnrh2.passedFilters(), is(false)); diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SparseAnalysisRunnerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SparseAnalysisRunnerTest.java new file mode 100644 index 000000000..a41017572 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/SparseAnalysisRunnerTest.java @@ -0,0 +1,356 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.model.FilterStatus; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.MockPrioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.util.EnumSet; +import java.util.HashMap; +import java.util.Map; + +import static org.hamcrest.CoreMatchers.*; +import static org.hamcrest.MatcherAssert.assertThat; + + +/** + * @author Jules Jacobsen + */ +public class SparseAnalysisRunnerTest extends AnalysisRunnerTestBase { + + private final SparseAnalysisRunner instance = new SparseAnalysisRunner(geneFactory, variantFactory, stubDataService); + + @Test + public void testRunAnalysis_NoFiltersNoPrioritisers() { + Analysis analysis = makeAnalysis(vcfPath); + + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + for (Gene gene : analysisResults.getGenes()) { + assertThat(gene.passedFilters(), is(true)); + for (VariantEvaluation variantEvaluation : gene.getVariantEvaluations()) { + assertThat(variantEvaluation.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); + } + } + } + + @Test + public void testRunAnalysis_VariantFilterOnly_OneVariantPasses() { + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + + Analysis analysis = makeAnalysis(vcfPath, intervalFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene gnrh2 = results.get("GNRHR2"); + assertThat(gnrh2.passedFilters(), is(false)); + assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(true)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); + assertThat(rbm8a.getPassedVariantEvaluations().size(), equalTo(1)); + + VariantEvaluation variantEvaluation = rbm8a.getPassedVariantEvaluations().get(0); + assertThat(variantEvaluation.getChromosome(), equalTo(1)); + assertThat(variantEvaluation.getPosition(), equalTo(145508800)); + + } + + @Test + public void testRunAnalysis_TwoVariantFilters_AllVariantsFail_VariantsShouldContainOnlyOneFailedFilterResult() { + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + VariantFilter qualityFilter = new QualityFilter(9999999f); + + Analysis analysis = makeAnalysis(vcfPath, intervalFilter, qualityFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene gnrh2 = results.get("GNRHR2"); + assertThat(gnrh2.passedFilters(), is(false)); + assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); + VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); + assertThat(gnrh2Variant1.passedFilters(), is(false)); + assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); + + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(false)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); + assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(true)); + + VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); + assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); + + VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); + assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); + assertThat(rbm8Variant2.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.QUALITY_FILTER))); + } + + @Test + public void testRunAnalysis_TwoVariantFiltersOnePrioritiser_VariantsShouldContainOnlyOneFailedFilterResult() { + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + VariantFilter qualityFilter = new QualityFilter(120); + Map hiPhiveGeneScores = new HashMap<>(); + hiPhiveGeneScores.put("GNRHR2", 0.75f); + hiPhiveGeneScores.put("RBM8A", 0.65f); + Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); + GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .addStep(intervalFilter) + .addStep(qualityFilter) + .addStep(mockHiPhivePrioritiser) + .addStep(inheritanceFilter) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene gnrh2 = results.get("GNRHR2"); + assertThat(gnrh2.passedFilters(), is(false)); + assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); + VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); + assertThat(gnrh2Variant1.passedFilters(), is(false)); + assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(true)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); + assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); + + VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); + assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER, FilterType.INHERITANCE_FILTER))); + + VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); + assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); + } + + @Test + public void testRunAnalysis_TwoVariantFiltersOnePrioritiserRecessiveInheritanceFilter_VariantsShouldContainOnlyOneFailedFilterResult() { + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + VariantFilter qualityFilter = new QualityFilter(120); + Map hiPhiveGeneScores = new HashMap<>(); + hiPhiveGeneScores.put("GNRHR2", 0.75f); + hiPhiveGeneScores.put("RBM8A", 0.65f); + Prioritiser mockHiPhivePrioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, hiPhiveGeneScores); + GeneFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .addStep(intervalFilter) + .addStep(qualityFilter) + .addStep(mockHiPhivePrioritiser) + .addStep(inheritanceFilter) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene gnrh2 = results.get("GNRHR2"); + assertThat(gnrh2.passedFilters(), is(false)); + assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); + VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); + assertThat(gnrh2Variant1.passedFilters(), is(false)); + assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(true)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); + assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); + + VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); + assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER, FilterType.INHERITANCE_FILTER))); + + VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); + assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); + } + + @Test + public void testRunAnalysis_PrioritiserAndPriorityScoreFilterOnly() { + Float desiredPrioritiserScore = 0.9f; + Map geneSymbolPrioritiserScores = new HashMap<>(); + geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); + + PriorityType prioritiserTypeToMock = PriorityType.HIPHIVE_PRIORITY; + Prioritiser prioritiser = new MockPrioritiser(prioritiserTypeToMock, geneSymbolPrioritiserScores); + GeneFilter priorityScoreFilter = new PriorityScoreFilter(prioritiserTypeToMock, desiredPrioritiserScore - 0.1f); + + Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene gnrh2 = results.get("GNRHR2"); + assertThat(gnrh2.passedFilters(), is(false)); + assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); + VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); + assertThat(gnrh2Variant1.passedFilters(), is(false)); + assertThat(gnrh2Variant1.getFilterStatus(), equalTo(FilterStatus.FAILED)); + assertThat(gnrh2Variant1.getFailedFilterTypes(), hasItem(FilterType.PRIORITY_SCORE_FILTER)); + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(true)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); + assertThat(rbm8a.getPassedVariantEvaluations().isEmpty(), is(false)); + assertThat(rbm8a.getEntrezGeneID(), equalTo(9939)); + assertThat(rbm8a.getPriorityScore(), equalTo(desiredPrioritiserScore)); + + VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); + assertThat(rbm8Variant1.passedFilters(), is(true)); + assertThat(rbm8Variant1.getFilterStatus(), equalTo(FilterStatus.PASSED)); + assertThat(rbm8Variant1.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(true)); + + VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); + assertThat(rbm8Variant2.passedFilters(), is(true)); + assertThat(rbm8Variant2.getFilterStatus(), equalTo(FilterStatus.PASSED)); + assertThat(rbm8Variant2.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(true)); + } + + @Test + public void testRunAnalysis_PrioritiserPriorityScoreFilterVariantFilter() { + Float desiredPrioritiserScore = 0.9f; + Map geneSymbolPrioritiserScores = new HashMap<>(); + geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); + + Prioritiser prioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, geneSymbolPrioritiserScores); + GeneFilter priorityScoreFilter = new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, desiredPrioritiserScore - 0.1f); + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + + Analysis analysis = makeAnalysis(vcfPath, prioritiser, priorityScoreFilter, intervalFilter); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + // fails with my new code as it reassigns 1:g.145510000G>A from GNRHR2 to RBM8A as both are annotated and RBM8A scores better due to above code + // note that the GNRH2 is actually a missense variant and RBM8A is a 3UTR variant so prob not that sensible! + assertThat(analysisResults.getGenes().size(), equalTo(2)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene gnrh2 = results.get("GNRHR2"); + assertThat(gnrh2.passedFilters(), is(false)); + assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); + VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); + assertThat(gnrh2Variant1.passedFilters(), is(false)); + assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER, FilterType.PRIORITY_SCORE_FILTER))); + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(true)); + assertThat(rbm8a.getEntrezGeneID(), equalTo(9939)); + assertThat(rbm8a.getGeneSymbol(), equalTo("RBM8A")); + assertThat(rbm8a.getPriorityScore(), equalTo(desiredPrioritiserScore)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); + + VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); + assertThat(rbm8Variant1.passedFilters(), is(false)); + assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.INTERVAL_FILTER))); + + VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); + assertThat(rbm8Variant2.passedFilters(), is(true)); + assertThat(rbm8Variant2.getChromosome(), equalTo(1)); + assertThat(rbm8Variant2.getPosition(), equalTo(145508800)); + assertThat(rbm8Variant2.getGeneSymbol(), equalTo(rbm8a.getGeneSymbol())); + } + + @Test + public void testRunAnalysis_VariantFilterPrioritiserPriorityScoreFilterVariantFilter() { + Float desiredPrioritiserScore = 0.9f; + Map geneSymbolPrioritiserScores = new HashMap<>(); + geneSymbolPrioritiserScores.put("RBM8A", desiredPrioritiserScore); + + VariantFilter qualityFilter = new QualityFilter(120); + Prioritiser prioritiser = new MockPrioritiser(PriorityType.HIPHIVE_PRIORITY, geneSymbolPrioritiserScores); + GeneFilter priorityScoreFilter = new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, desiredPrioritiserScore - 0.1f); + VariantFilter intervalFilter = new IntervalFilter(new GeneticInterval(1, 145508800, 145508800)); + InheritanceFilter inheritanceFilter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + + Analysis analysis = Analysis.builder() + .vcfPath(vcfPath) + .addStep(qualityFilter) + .addStep(prioritiser) + .addStep(priorityScoreFilter) + .addStep(intervalFilter) + .addStep(inheritanceFilter) + .modeOfInheritance(ModeOfInheritance.AUTOSOMAL_RECESSIVE) + .build(); + AnalysisResults analysisResults = instance.run(analysis); + printResults(analysisResults); + assertThat(analysisResults.getGenes().size(), equalTo(2)); + + Map results = makeResults(analysisResults.getGenes()); + + Gene gnrh2 = results.get("GNRHR2"); + assertThat(gnrh2.passedFilters(), is(false)); + assertThat(gnrh2.getNumberOfVariants(), equalTo(1)); + + VariantEvaluation gnrh2Variant1 = gnrh2.getVariantEvaluations().get(0); + assertThat(gnrh2Variant1.passedFilters(), is(false)); + assertThat(gnrh2Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.PRIORITY_SCORE_FILTER))); + + Gene rbm8a = results.get("RBM8A"); + assertThat(rbm8a.passedFilters(), is(true)); + assertThat(rbm8a.getEntrezGeneID(), equalTo(9939)); + assertThat(rbm8a.getGeneSymbol(), equalTo("RBM8A")); + assertThat(rbm8a.getPriorityScore(), equalTo(desiredPrioritiserScore)); + assertThat(rbm8a.getNumberOfVariants(), equalTo(2)); + + VariantEvaluation rbm8Variant1 = rbm8a.getVariantEvaluations().get(0); + assertThat(rbm8Variant1.passedFilters(), is(false)); + assertThat(rbm8Variant1.getFailedFilterTypes(), equalTo(EnumSet.of(FilterType.QUALITY_FILTER, FilterType.INHERITANCE_FILTER))); + + VariantEvaluation rbm8Variant2 = rbm8a.getVariantEvaluations().get(1); + assertThat(rbm8Variant2.passedFilters(), is(true)); + assertThat(rbm8Variant2.getChromosome(), equalTo(1)); + assertThat(rbm8Variant2.getPosition(), equalTo(145508800)); + assertThat(rbm8Variant2.getGeneSymbol(), equalTo(rbm8a.getGeneSymbol())); + assertThat(rbm8Variant2.passedFilter(FilterType.QUALITY_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.INTERVAL_FILTER), is(true)); + assertThat(rbm8Variant2.passedFilter(FilterType.INHERITANCE_FILTER), is(true)); + } + +} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/StreamsTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/StreamsTest.java similarity index 81% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/StreamsTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/StreamsTest.java index 828336b39..52c15edec 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/StreamsTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/StreamsTest.java @@ -1,9 +1,31 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.analysis; +package org.monarchinitiative.exomiser.core.analysis; + +import org.junit.Test; import java.io.IOException; import java.nio.charset.Charset; @@ -18,8 +40,6 @@ import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Test; - /** * @author jj8 */ @@ -44,7 +64,7 @@ public void streamTest() { System.out.println("mapping " + n); return n * n; }) - // .limit(2) + // .limit(2) .collect(toList()); assertThat(twoEvenSquares, equalTo(Arrays.asList(16, 64))); @@ -67,7 +87,7 @@ public void parallelStreamTest() { System.out.println("mapping " + n); return n * n; }) - // .limit(2) + // .limit(2) .collect(toList()); assertThat(twoEvenSquares, equalTo(Arrays.asList(16, 64))); @@ -113,8 +133,8 @@ public void streamFileCountVariantsUsingStaticClass() throws IOException { .filter(line -> VariantLineFilter.isVariantLine(line)) .count(); assertThat(numberOfVariants, equalTo(3L)); - } - + } + private static class VariantLineFilter { public static boolean isVariantLine(String line) { diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/ChromosomalRegionIndexTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/ChromosomalRegionIndexTest.java new file mode 100644 index 000000000..e2030bc86 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/ChromosomalRegionIndexTest.java @@ -0,0 +1,142 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis.util; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.SimpleVariantCoordinates; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.VariantCoordinates; + +import java.util.Arrays; +import java.util.Collections; +import java.util.HashMap; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class ChromosomalRegionIndexTest { + + private ChromosomalRegionIndex instance; + + private final VariantCoordinates variant = new SimpleVariantCoordinates(1, 50, "A", "T"); + + private void createInstance(TopologicalDomain... tad) { + instance = new ChromosomalRegionIndex<>(Arrays.asList(tad)); + } + + @Test + public void testGetTadsContainingVariant_SingleTad() { + TopologicalDomain tad = new TopologicalDomain(1, 1, 100, new HashMap<>()); + createInstance(tad); + + assertThat(instance.getRegionsContainingVariant(variant), equalTo(Arrays.asList(tad))); + assertThat(instance.hasRegionContainingVariant(variant), is(true)); + } + + @Test + public void testGetTadsContainingVariant_SingleTadVariantNotInTad() { + TopologicalDomain tad = new TopologicalDomain(1, 1, 10, new HashMap<>()); + createInstance(tad); + + assertThat(instance.getRegionsContainingVariant(variant), equalTo(Collections.emptyList())); + assertThat(instance.hasRegionContainingVariant(variant), is(false)); + } + + @Test + public void testGetTadsContainingVariant_SingleTadVariantNotInChromosomeIndex() { + TopologicalDomain tad = new TopologicalDomain(1, 1, 10, new HashMap<>()); + createInstance(tad); + + assertThat(instance.getRegionsContainingVariant(new SimpleVariantCoordinates(100, 50, "A", "T")), equalTo(Collections.emptyList())); + } + + @Test + public void testGetTadsContainingPosition_PositionOneBeforeStartOfRegion() { + TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); + createInstance(tad); + + assertThat(instance.getRegionsOverlappingPosition(1, 9), equalTo(Collections.emptyList())); + } + + @Test + public void testGetTadsContainingPosition_PositionAtStartOfRegion() { + TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); + createInstance(tad); + + assertThat(instance.getRegionsOverlappingPosition(1, 10), equalTo(Arrays.asList(tad))); + } + + @Test + public void testGetTadsContainingPosition_PositionMiddleOfRegion() { + TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); + createInstance(tad); + + assertThat(instance.getRegionsOverlappingPosition(1, 11), equalTo(Arrays.asList(tad))); + } + + @Test + public void testGetTadsContainingPosition_PositionAtEndOfRegion() { + TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); + createInstance(tad); + + assertThat(instance.getRegionsOverlappingPosition(1, 12), equalTo(Arrays.asList(tad))); + } + + @Test + public void testGetTadsContainingPosition_PositionOneAfterEndOfRegion() { + TopologicalDomain tad = new TopologicalDomain(1, 10, 12, new HashMap<>()); + createInstance(tad); + + assertThat(instance.getRegionsOverlappingPosition(1, 13), equalTo(Collections.emptyList())); + } + + @Test + public void testGetTadsContainingVariant_TwoNonOverlappingTads() { + TopologicalDomain tad = new TopologicalDomain(1, 1, 100, new HashMap<>()); + TopologicalDomain tad1 = new TopologicalDomain(2, 200, 300, new HashMap<>()); + createInstance(tad, tad1); + + assertThat(instance.getRegionsContainingVariant(variant), equalTo(Arrays.asList(tad))); + } + + @Test + public void testGetTadsContainingVariant_TwoOverlappingTadsVariantInBoth() { + TopologicalDomain tad = new TopologicalDomain(1, 1, 100, new HashMap<>()); + TopologicalDomain tad1 = new TopologicalDomain(1, 25, 75, new HashMap<>()); + createInstance(tad, tad1); + + assertThat(instance.getRegionsContainingVariant(variant), equalTo(Arrays.asList(tad, tad1))); + } + + @Test + public void testGetTadsContainingVariant_TwoOverlappingTadsVariantInOne() { + TopologicalDomain tad = new TopologicalDomain(1, 1, 100, new HashMap<>()); + TopologicalDomain tad1 = new TopologicalDomain(1, 75, 200, new HashMap<>()); + createInstance(tad, tad1); + + assertThat(instance.getRegionsContainingVariant(variant), equalTo(Arrays.asList(tad))); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/GeneReassignerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/GeneReassignerTest.java similarity index 75% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/GeneReassignerTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/GeneReassignerTest.java index 95af0ef86..d2701d5be 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/analysis/util/GeneReassignerTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/GeneReassignerTest.java @@ -1,47 +1,56 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.analysis.util; +package org.monarchinitiative.exomiser.core.analysis.util; -import de.charite.compbio.exomiser.core.factories.*; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.TopologicalDomain; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.BasePriorityResult; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; import de.charite.compbio.jannovar.annotation.VariantEffect; import de.charite.compbio.jannovar.reference.Strand; import de.charite.compbio.jannovar.reference.TranscriptModel; import htsjdk.variant.variantcontext.VariantContext; -import org.hamcrest.*; +import org.hamcrest.Description; +import org.hamcrest.Matcher; +import org.hamcrest.TypeSafeDiagnosingMatcher; import org.junit.Before; import org.junit.Test; +import org.monarchinitiative.exomiser.core.genome.GeneTranscriptModelBuilder; +import org.monarchinitiative.exomiser.core.genome.TestFactory; +import org.monarchinitiative.exomiser.core.genome.VariantContextBuilder; +import org.monarchinitiative.exomiser.core.genome.VariantFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.MockPriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; import org.slf4j.Logger; import org.slf4j.LoggerFactory; -import java.util.*; +import java.util.Arrays; +import java.util.HashMap; +import java.util.List; +import java.util.Map; import java.util.stream.Stream; import static java.util.stream.Collectors.toList; import static java.util.stream.Collectors.toMap; import static org.hamcrest.CoreMatchers.equalTo; -import static org.junit.Assert.*; +import static org.junit.Assert.assertThat; /** * @author Jules Jacobsen @@ -97,7 +106,7 @@ private int getMiddlePosition(TopologicalDomain tad) { } private VariantEvaluation variant(int chr, int pos, String ref, String alt, VariantEffect variantEffect, Gene gene) { - return new VariantEvaluation.VariantBuilder(chr, pos, ref, alt) + return VariantEvaluation.builder(chr, pos, ref, alt) .variantEffect(variantEffect) .geneId(gene.getEntrezGeneID()) .geneSymbol(gene.getGeneSymbol()) @@ -116,31 +125,51 @@ private GeneReassigner makeInstance(PriorityType hiphivePriority, TopologicalDom return new GeneReassigner(hiphivePriority, allGenes, tadIndex); } + + private void addPriorityResultWithScore(Gene gene, double score) { + gene.addPriorityResult(new MockPriorityResult(PriorityType.HIPHIVE_PRIORITY, gene.getEntrezGeneID(), gene.getGeneSymbol(), score)); + } + /** * This is the simplest case happy path test . */ @Test public void assignsRegulatoryVariantToBestPhenotypicMatch_variantOriginallyAssociatedWithBestCandidateGene() { - gene1.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 1f)); - gene2.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 0f)); + addPriorityResultWithScore(gene1, 1d); + addPriorityResultWithScore(gene2, 0d); TopologicalDomain tad = makeTad(1, 1, 20000, gene1, gene2); instance = makeInstance(PriorityType.HIPHIVE_PRIORITY, tad); VariantEvaluation variant = regulatoryVariantInTad(tad, gene1); - instance.reassignVariantToMostPhenotypicallySimilarGeneInTad(variant); + instance.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variant); + + assertThat(variant, isAssignedTo(gene1)); + } + + @Test + public void assignsRegulatoryVariantToBestPhenotypicMatch_variantNotOriginallyAssociatedWithBestCandidateGene() { + addPriorityResultWithScore(gene1, 1d); + addPriorityResultWithScore(gene2, 0d); + + TopologicalDomain tad = makeTad(1, 1, 20000, gene1, gene2); + instance = makeInstance(PriorityType.HIPHIVE_PRIORITY, tad); + + VariantEvaluation variant = regulatoryVariantInTad(tad, gene2); + instance.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variant); assertThat(variant, isAssignedTo(gene1)); } + @Test public void noneTypePrioritiser() { TopologicalDomain tad = makeTad(1, 1, 20000, gene1, gene2); instance = makeInstance(PriorityType.NONE, tad); VariantEvaluation variant = regulatoryVariantInTad(tad, gene1); - instance.reassignVariantToMostPhenotypicallySimilarGeneInTad(variant); + instance.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variant); assertThat(variant, isAssignedTo(gene1)); } @@ -148,73 +177,59 @@ public void noneTypePrioritiser() { @Test public void variantInGeneNotAssociatedAnyTad() { - gene1.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 1f)); - gene2.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 0f)); + addPriorityResultWithScore(gene1, 1d); + addPriorityResultWithScore(gene2, 0d); TopologicalDomain tad = makeTad(1, 1, 20000, gene1); instance = makeInstance(PriorityType.HIPHIVE_PRIORITY, tad); VariantEvaluation variant = variant(2, 999999, "A", "G", VariantEffect.REGULATORY_REGION_VARIANT, gene2); - instance.reassignVariantToMostPhenotypicallySimilarGeneInTad(variant); + instance.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variant); assertThat(variant, isAssignedTo(gene2)); } - @Test - public void assignsRegulatoryVariantToBestPhenotypicMatch_variantNotOriginallyAssociatedWithBestCandidateGene() { - gene1.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 1f)); - gene2.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 0f)); - - TopologicalDomain tad = makeTad(1, 1, 20000, gene1, gene2); - instance = makeInstance(PriorityType.HIPHIVE_PRIORITY, tad); - - VariantEvaluation variant = regulatoryVariantInTad(tad, gene2); - instance.reassignVariantToMostPhenotypicallySimilarGeneInTad(variant); - - assertThat(variant, isAssignedTo(gene1)); - } - @Test public void assignsRegulatoryVariantToBestPhenotypicMatch_variantAssociatedWithGeneInOtherTad() { - gene1.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 1f)); + addPriorityResultWithScore(gene1, 1d); TopologicalDomain tad1 = makeTad(1, 1, 20000, gene1); - gene2.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 0f)); + addPriorityResultWithScore(gene2, 0d); TopologicalDomain tad2 = makeTad(1, 40000, 80000, gene2); instance = makeInstance(PriorityType.HIPHIVE_PRIORITY, tad1, tad2); VariantEvaluation variant = regulatoryVariantInTad(tad2, gene2); - instance.reassignVariantToMostPhenotypicallySimilarGeneInTad(variant); + instance.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variant); assertThat(variant, isAssignedTo(gene2)); } @Test public void assignsRegulatoryVariantToBestPhenotypicMatch_ignoresNonRegulatoryVariant() { - gene1.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 1f)); - gene2.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 0f)); + addPriorityResultWithScore(gene1, 1d); + addPriorityResultWithScore(gene2, 0d); TopologicalDomain tad = makeTad(1, 1, 20000, gene1, gene2); instance = makeInstance(PriorityType.HIPHIVE_PRIORITY, tad); VariantEvaluation variant = variantInTadWithEffect(tad, VariantEffect.MISSENSE_VARIANT, gene2); - instance.reassignVariantToMostPhenotypicallySimilarGeneInTad(variant); + instance.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variant); assertThat(variant, isAssignedTo(gene2)); } @Test public void assignsRegulatoryVariantToBestPhenotypicMatch_variantNotMovedWhenAllGenesHaveEqualScore() { - gene1.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 0.5f)); - gene2.addPriorityResult(new BasePriorityResult(PriorityType.HIPHIVE_PRIORITY, 0.5f)); + addPriorityResultWithScore(gene1, 0.5d); + addPriorityResultWithScore(gene2, 0.5d); TopologicalDomain tad = makeTad(1, 1, 20000, gene1, gene2); instance = makeInstance(PriorityType.HIPHIVE_PRIORITY, tad); VariantEvaluation variant = regulatoryVariantInTad(tad, gene1); - instance.reassignVariantToMostPhenotypicallySimilarGeneInTad(variant); + instance.reassignRegulatoryRegionVariantToMostPhenotypicallySimilarGeneInTad(variant); assertThat(variant, isAssignedTo(gene1)); } diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/InheritanceModeAnalyserTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/InheritanceModeAnalyserTest.java new file mode 100644 index 000000000..0b025c0d7 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/InheritanceModeAnalyserTest.java @@ -0,0 +1,607 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis.util; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import de.charite.compbio.jannovar.pedigree.Disease; +import de.charite.compbio.jannovar.pedigree.PedPerson; +import de.charite.compbio.jannovar.pedigree.Pedigree; +import de.charite.compbio.jannovar.pedigree.Sex; +import htsjdk.variant.variantcontext.Allele; +import htsjdk.variant.variantcontext.Genotype; +import htsjdk.variant.variantcontext.GenotypeType; +import htsjdk.variant.variantcontext.VariantContext; +import org.junit.Ignore; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; +import static org.monarchinitiative.exomiser.core.analysis.util.TestAlleleFactory.*; + +/** + * + * @author Jules Jacobsen + */ +public class InheritanceModeAnalyserTest { + + @Test + public void testAnalyseInheritanceModes_SingleSample_NoVariants() { + Gene gene = newGene(); + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.ANY, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + } + + @Test + public void testAnalyseInheritanceModes_SingleSample_NoPassedVariants() { + Gene gene = newGene(); + gene.addVariant(filteredVariant(1, 1 , "A", "T", FilterResult.fail(FilterType.FREQUENCY_FILTER))); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.ANY, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + } + + @Test + public void testAnalyseInheritanceModes_SingleSample_OnePassedVariant_HET() { + List alleles = buildAlleles("A", "T"); + // build Genotype + Genotype genotype = buildSampleGenotype("Adam", alleles.get(0), alleles.get(1)); + assertThat(genotype.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, genotype); + System.out.println("Built variant context " + variantContext); + + Gene gene = newGene(); + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); + + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_DOMINANT, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + } + + @Test + public void testAnalyseInheritanceModes_SingleSample_OnePassedVariant_HOM_REF_ShouldBeIncompatibleWith_RECESIVE() { + List alleles = buildAlleles("A", "T"); + + //HomRef 0/0 or 0|0 variants really shouldn't be causing rare diseases so we need to ensure these are removed + Genotype genotype = buildSampleGenotype("Adam", alleles.get(0), alleles.get(0)); + assertThat(genotype.getType(), equalTo(GenotypeType.HOM_REF)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, genotype); + System.out.println("Built variant context " + variantContext); + + Gene gene = newGene(); + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + } + + @Test + public void testAnalyseInheritanceModes_SingleSample_OnePassedVariant_HOM_REF_ShouldBeIncompatibleWith_DOMINANT() { + List alleles = buildAlleles("A", "T"); + + //HomRef 0/0 or 0|0 variants really shouldn't be causing rare diseases so we need to ensure these are removed + Genotype genotype = buildSampleGenotype("Adam", alleles.get(0), alleles.get(0)); + assertThat(genotype.getType(), equalTo(GenotypeType.HOM_REF)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, genotype); + System.out.println("Built variant context " + variantContext); + + Gene gene = newGene(); + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_DOMINANT, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> assertThat(variant.getInheritanceModes().isEmpty(), is(true))); + } + + @Test + public void testAnalyseInheritanceModes_SingleSample_OnePassedVariant_HOM_VAR() { + List alleles = buildAlleles("A", "T"); + //HOM_ALT + Genotype genotype = buildSampleGenotype("Adam", alleles.get(1), alleles.get(1)); + assertThat(genotype.getType(), equalTo(GenotypeType.HOM_VAR)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, genotype); + System.out.println("Built variant context " + variantContext); + + Gene gene = newGene(); + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Adam"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_DOMINANT, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> assertThat(variant.getInheritanceModes().isEmpty(), is(true))); + } + + @Test + public void testAnalyseInheritanceModes_MultiSample_OnePassedVariant_HOM_VAR_shouldBeCompatibelWith_RECESSIVE() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T"); + // build Genotype + //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases + Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(1)); + assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); + + Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); + assertThat(mother.getType(), equalTo(GenotypeType.HET)); + + Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); + assertThat(father.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); + PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); + PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); + Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE))); + } + + @Test + public void testAnalyseInheritanceModes_MultiSample_OnePassedVariant_HOM_REF_shouldNotBeCompatibleWith_AR() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T"); + // build Genotype + //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases + Genotype proband = buildSampleGenotype("Cain", alleles.get(0), alleles.get(0)); + assertThat(proband.getType(), equalTo(GenotypeType.HOM_REF)); + + Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); + assertThat(mother.getType(), equalTo(GenotypeType.HET)); + + Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); + assertThat(father.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); + PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); + PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); + Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> assertThat(variant.getInheritanceModes().isEmpty(), is(true))); + } + + @Test + public void testAnalyseInheritanceModes_MultiSample_OnePassedVariant_HET_shouldBeCompatibleWith_AD() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T"); + // build Genotype + //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases + Genotype proband = buildSampleGenotype("Cain", alleles.get(0), alleles.get(1)); + assertThat(proband.getType(), equalTo(GenotypeType.HET)); + + Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(0)); + assertThat(mother.getType(), equalTo(GenotypeType.HOM_REF)); + + Genotype father = buildSampleGenotype("Adam", alleles.get(0), alleles.get(0)); + assertThat(father.getType(), equalTo(GenotypeType.HOM_REF)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); + PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); + PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); + Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_DOMINANT, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT))); + } + + @Test + public void testAnalyseInheritanceModes_MultiSample_MultiAllelic_TwoPassedVariant_HOM_VAR_shouldBeCompatibleWith_AR() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T", "C"); + // build Genotype + //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases + Genotype proband = buildSampleGenotype("Cain", alleles.get(2), alleles.get(2)); + assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); + + Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); + assertThat(mother.getType(), equalTo(GenotypeType.HET)); + + Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); + assertThat(father.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + gene.addVariant(filteredVariant(1, 12345, "A", "C", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); + PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); + PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); + Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> { + System.out.println(variantString(variant)); + assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); + }); + } + + private String variantString(VariantEvaluation variant) { + return String.format("%s\t%s\t%s\t%s\t%s\tcompatibleWith=%s",variant.getChromosome(), variant.getRef(), variant.getAlt(), variant.getAltAlleleId(), variant.getGenotypeString(), variant.getInheritanceModes()); + } + + /** + * Currently ignored as Jannovar multi-allelic inheritance compatibility is broken for multi-sample VCF. + */ + @Ignore + @Test + public void testAnalyseInheritanceModes_MultiSample_MultiAllelic_OnePassedVariant_HOM_VAR_altAllele2_shouldBeCompatibleWith_AR() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T", "C"); + // build Genotype + //HomVar 1/1 or 1|1 variants are a really likely candidate for recessive rare diseases + Genotype proband = buildSampleGenotype("Cain", alleles.get(2), alleles.get(2)); + assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); + + Genotype mother = buildSampleGenotype("Eve", alleles.get(1), alleles.get(1)); + assertThat(mother.getType(), equalTo(GenotypeType.HOM_VAR)); + + Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); + assertThat(father.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.fail(FilterType.FREQUENCY_FILTER), variantContext)); + gene.addVariant(filteredVariant(1, 12345, "A", "C", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); + PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); + PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); + Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> { + System.out.println(variantString(variant)); + assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); + }); + } + + /** + * Currently ignored as Jannovar multi-allelic inheritance compatibility is broken for multi-sample VCF. + */ + @Ignore + @Test + public void testAnalyseInheritanceModes_MultiSample_MultiAllelic_OnePassedVariant_HET_shouldBeCompatibleWith_AD() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T", "C"); + + Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(2)); + assertThat(proband.getType(), equalTo(GenotypeType.HET)); + + Genotype brother = buildSampleGenotype("Abel", alleles.get(1), alleles.get(1)); + assertThat(brother.getType(), equalTo(GenotypeType.HOM_VAR)); + + Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); + assertThat(mother.getType(), equalTo(GenotypeType.HET)); + + Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); + assertThat(father.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, brother, mother, father); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.fail(FilterType.FREQUENCY_FILTER), variantContext)); + gene.addVariant(filteredVariant(1, 12345, "A", "C", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList()); + PedPerson brotherPerson = new PedPerson("Family", "Abel", "Adam", "Eve", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); + PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList()); + PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList()); + Pedigree pedigree = buildPedigree(probandPerson, brotherPerson, motherPerson, fatherPerson); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_DOMINANT, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> { + System.out.println(variantString(variant)); + assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + }); + } + + private Gene newGene() { + return new Gene("ABC", 123); + } + + + @Test + public void testAnalyseInheritanceModes_SingleSample_MultiAllelic_OnePassedVariant_HET_shouldBeCompatibleWith_AD() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T", "C"); + + Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(2)); + assertThat(proband.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.fail(FilterType.FREQUENCY_FILTER), variantContext)); + gene.addVariant(filteredVariant(1, 12345, "A", "C", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Cain"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_DOMINANT, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> { + System.out.println(variantString(variant)); + assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + }); + } + + @Test + public void testAnalyseInheritanceModes_SingleSample_MultiAllelic_TwoPassedVariant_HET_shouldBeCompatibleWith_AD() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T", "C"); + + Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(2)); + assertThat(proband.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + gene.addVariant(filteredVariant(1, 12345, "A", "C", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Cain"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_DOMINANT, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> { + System.out.println(variantString(variant)); + assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + }); + } + + @Test + public void testAnalyseInheritanceModes_SingleSample_MultiAllelic_TwoPassedVariant_HOM_VAR_Allele2_shouldBeCompatibleWith_AR() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T", "C"); + + Genotype proband = buildSampleGenotype("Cain", alleles.get(2), alleles.get(2)); + assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + gene.addVariant(filteredVariant(1, 12345, "A", "C", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Cain"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> { + System.out.println(variantString(variant)); + assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); + }); + } + + @Test + public void testAnalyseInheritanceModes_SingleSample_MultiAllelic_TwoPassedVariant_HOM_VAR_Allele1_shouldBeCompatibleWith_AR() { + Gene gene = newGene(); + List alleles = buildAlleles("A", "T", "C"); + + Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(1)); + assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband); + System.out.println("Built variant context " + variantContext); + + gene.addVariant(filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + gene.addVariant(filteredVariant(1, 12345, "A", "C", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext)); + + Pedigree pedigree = Pedigree.constructSingleSamplePedigree("Cain"); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + instance.analyseInheritanceModes(gene); + assertThat(gene.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(gene.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + + gene.getPassedVariantEvaluations() + .forEach(variant -> { + System.out.println(variantString(variant)); + assertThat(variant.getInheritanceModes(), hasItem(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); + }); + } + + @Test + public void testFindCompHetCompatibleAllelesTwoAffectedSibsUnaffectedMotherhMissingFater() { + Gene gene = newGene(); + + //1 98518687 . T A 733 . GT 1|0 1|0 1|0 + List alleles = buildAlleles("T", "A"); + + Genotype proband = buildSampleGenotype("Cain", alleles.get(0), alleles.get(1)); + assertThat(proband.getType(), equalTo(GenotypeType.HET)); + + Genotype brother = buildSampleGenotype("Abel", alleles.get(0), alleles.get(1)); + assertThat(brother.getType(), equalTo(GenotypeType.HET)); + + Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); + assertThat(mother.getType(), equalTo(GenotypeType.HET)); + + VariantContext vc98518687 = buildVariantContext(1, 98518687, alleles, proband, brother, mother); + VariantEvaluation var98518687 = filteredVariant(1, 98518687, "T", "A", FilterResult.pass(FilterType.FREQUENCY_FILTER), vc98518687); + System.out.println("Built allele " + var98518687); + gene.addVariant(var98518687); + + //1 98518683 . T A 733 . GT 1|0 1|0 1|0 + List alleles98518683 = buildAlleles("T", "A"); + + Genotype proband98518683 = buildSampleGenotype("Cain", alleles98518683.get(0), alleles98518683.get(1)); + assertThat(proband98518683.getType(), equalTo(GenotypeType.HET)); + + Genotype brother98518683 = buildSampleGenotype("Abel", alleles98518683.get(0), alleles98518683.get(1)); + assertThat(brother98518683.getType(), equalTo(GenotypeType.HET)); + + Genotype mother98518683 = buildSampleGenotype("Eve", alleles98518683.get(0), alleles98518683.get(1)); + assertThat(mother98518683.getType(), equalTo(GenotypeType.HET)); + + VariantContext vc98518683 = buildVariantContext(1, 98518683, alleles98518683, proband98518683, brother98518683, mother98518683); + VariantEvaluation var98518683 = filteredVariant(1, 98518683, "T", "A", FilterResult.pass(FilterType.FREQUENCY_FILTER), vc98518683); + System.out.println("Built allele " + var98518683); + gene.addVariant(var98518683); + + //1 97723020 . A G 1141 . GT 1/0 0/0 1/0 + List alleles97723020 = buildAlleles("A", "G"); + + Genotype proband97723020 = buildSampleGenotype("Cain", alleles97723020.get(0), alleles97723020.get(1)); + assertThat(proband97723020.getType(), equalTo(GenotypeType.HET)); + + Genotype brother97723020 = buildSampleGenotype("Abel", alleles97723020.get(0), alleles97723020.get(1)); + assertThat(brother97723020.getType(), equalTo(GenotypeType.HET)); + + Genotype mother97723020 = buildSampleGenotype("Eve", alleles97723020.get(0), alleles97723020.get(0)); + assertThat(mother97723020.getType(), equalTo(GenotypeType.HOM_REF)); + + VariantContext vc97723020 = buildVariantContext(1, 97723020, alleles97723020, proband97723020, brother97723020, mother97723020); + VariantEvaluation var97723020 = filteredVariant(1, 97723020, "A", "G", FilterResult.pass(FilterType.FREQUENCY_FILTER), vc97723020); + System.out.println("Built allele " + var97723020); + gene.addVariant(var97723020); + + PedPerson probandPerson = new PedPerson("Family", "Cain", "0", "Eve", Sex.MALE, Disease.AFFECTED, Collections.emptyList()); + PedPerson brotherPerson = new PedPerson("Family", "Abel", "0", "Eve", Sex.MALE, Disease.AFFECTED, Collections.emptyList()); + PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, Collections.emptyList()); + Pedigree pedigree = buildPedigree(probandPerson, brotherPerson, motherPerson); + + InheritanceModeAnalyser instance = new InheritanceModeAnalyser(ModeOfInheritance.AUTOSOMAL_RECESSIVE, pedigree); + List> compHetAlleles = instance.findCompatibleCompHetAlleles(gene.getPassedVariantEvaluations()); + + assertThat(compHetAlleles.size(), equalTo(2)); + assertThat(compHetAlleles.get(0), equalTo(Arrays.asList(var98518687, var97723020))); + assertThat(compHetAlleles.get(1), equalTo(Arrays.asList(var98518683, var97723020))); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/PedigreeFactoryTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/PedigreeFactoryTest.java new file mode 100644 index 000000000..0996df005 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/PedigreeFactoryTest.java @@ -0,0 +1,183 @@ + +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis.util; + +import de.charite.compbio.jannovar.pedigree.Disease; +import de.charite.compbio.jannovar.pedigree.Pedigree; +import de.charite.compbio.jannovar.pedigree.Person; +import de.charite.compbio.jannovar.pedigree.Sex; +import org.junit.Before; +import org.junit.Test; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.Arrays; +import java.util.Collections; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PedigreeFactoryTest { + + private PedigreeFactory instance; + + private static final Path validPedFilePath = Paths.get("src/test/resources/pedValid.ped"); + private static final Path inValidPedFilePath = Paths.get("src/test/resources/pedNotValid.ped"); + + private static final Person ADAM = new Person("Adam", null, null, Sex.MALE, Disease.UNAFFECTED); + private static final Person EVA = new Person("Eva", null, null, Sex.FEMALE, Disease.UNAFFECTED); + private static final Person SETH = new Person("Seth", ADAM, EVA, Sex.MALE, Disease.AFFECTED); + + @Before + public void setUp() { + instance = new PedigreeFactory(); + } + + private void assertContainsPerson(Person expected, Pedigree pedigree) { + String name = expected.getName(); + assertThat(pedigree.hasPerson(name), is(true)); + Person person = pedigree.getNameToMember().get(name).getPerson(); + assertThat(person, equalTo(expected)); + } + + @Test + public void createsSingleSamplePedigreeWithDefaultNameWhenSampleHasNoNameOrPedFile() { + Pedigree result = instance.createPedigreeForSampleData(null, Collections.emptyList()); + Person person = result.getMembers().get(0); + assertThat(person.getName(), equalTo(PedigreeFactory.DEFAULT_SAMPLE_NAME)); + } + + @Test(expected = PedigreeFactory.PedigreeCreationException.class) + public void pedigreePresentAndSampleHasNoName() { + instance.createPedigreeForSampleData(validPedFilePath, Collections.emptyList()); + } + + @Test + public void createsSingleSamplePedigreeWhenSampleHasOnlyOneNamedMemberAndNoPedFile() { + Pedigree result = instance.createPedigreeForSampleData(null, Arrays.asList("Adam")); + Person person = result.getMembers().get(0); + assertThat(person.getName(), equalTo("Adam")); + } + + @Test + public void createsSingleSamplePedigreeWithSampleName() { + Pedigree result = instance.createPedigreeForSampleData(validPedFilePath, Arrays.asList("Seth")); + Person person = result.getMembers().get(0); + assertThat(person.getName(), equalTo("Seth")); } + + @Test(expected = PedigreeFactory.PedigreeCreationException.class) + public void throwsErrorWhenMultiSampleDataHasNoPedFile() { + instance.createPedigreeForSampleData(null, Arrays.asList("Adam", "Eve", "Cain", "Abel")); + } + + @Test + public void throwsErrorForNamedMultiSampleWithInvalidPedFile() { + Pedigree pedigree = instance.createPedigreeForSampleData(inValidPedFilePath, Arrays.asList("Adam", "Eva", "Seth")); + pedigree.getMembers().forEach(System.out::println); + assertThat(pedigree.getMembers().size(), equalTo(3)); + assertContainsPerson(ADAM, pedigree); + //TODO: should we throw an exception still, log a warning, or leave it to go through? + Person eva = pedigree.getNameToMember().get(EVA.getName()).getPerson(); + assertThat(eva.getSex(), equalTo(Sex.UNKNOWN)); + + Person seth = pedigree.getNameToMember().get(SETH.getName()).getPerson(); + assertThat(seth, equalTo(new Person("Seth", ADAM, eva, Sex.MALE, Disease.AFFECTED))); + } + + @Test + public void createsPedigreeForNamedMultiSampleWithPedFile() { + Pedigree pedigree = instance.createPedigreeForSampleData(validPedFilePath, Arrays.asList("Adam", "Eva", "Seth")); + System.out.println(pedigree); + assertThat(pedigree.getMembers().size(), equalTo(3)); + assertContainsPerson(ADAM, pedigree); + assertContainsPerson(EVA, pedigree); + assertContainsPerson(SETH, pedigree); + } + + @Test + public void createsPedigreeForNamedMultiSampleWithPedFileWithDisorderedNames() { + Pedigree pedigree = instance.createPedigreeForSampleData(validPedFilePath, Arrays.asList("Adam", "Seth", "Eva")); + assertThat(pedigree.getMembers().size(), equalTo(3)); + assertContainsPerson(ADAM, pedigree); + assertContainsPerson(EVA, pedigree); + assertContainsPerson(SETH, pedigree); + } + + @Test + public void createsPedigreeForPedFileWithHeader() { + Pedigree pedigree = instance.createPedigreeForSampleData(Paths.get("src/test/resources/pedWithHeader.ped"), Arrays.asList("Adam", "Seth", "Eva")); + assertThat(pedigree.getMembers().size(), equalTo(3)); + assertContainsPerson(ADAM, pedigree); + assertContainsPerson(SETH, pedigree); + assertContainsPerson(EVA, pedigree); + } + + @Test + public void testCreatePedigreeWithMorePedigreeMembersThanSampleNames() { + Pedigree pedigree = instance.createPedigreeForSampleData(validPedFilePath, Arrays.asList("Eva", "Seth")); + assertThat(pedigree.getMembers().size(), equalTo(3)); + assertContainsPerson(SETH, pedigree); + assertContainsPerson(EVA, pedigree); + } + + @Test(expected = PedigreeFactory.PedigreeCreationException.class) + public void testCreatePedigreeWithMoreSampleNamesThanPedigreeMembers() { + instance.createPedigreeForSampleData(validPedFilePath, Arrays.asList("Adam", "Eva", "Cain", "Abel", "Seth")); + } + + @Test(expected = PedigreeFactory.PedigreeCreationException.class) + public void testCreatePedigreeWithMoreSampleNamesThanPedigreeMembersAndMismatchedSample() { + instance.createPedigreeForSampleData(validPedFilePath, Arrays.asList("Adam", "Marge", "Abel", "Seth")); + } + + @Test(expected = PedigreeFactory.PedigreeCreationException.class) + public void testCreatePedigreeWithMismatchedSampleNameAndPedigreeMember() { + instance.createPedigreeForSampleData(validPedFilePath, Arrays.asList("Adam", "Marge", "Seth")); + } + + @Test(expected = PedigreeFactory.PedigreeCreationException.class) + public void testCreatePedigreeWithCompletelyMismatchedSampleNames() { + instance.createPedigreeForSampleData(validPedFilePath, Arrays.asList("Homer", "Marge", "Bart", "Lisa", "Maggie")); + } + + @Test + public void testCreatePedigreeWithSpacesInsteadOfTabs() { + Pedigree pedigree = instance.createPedigreeForSampleData(Paths.get("src/test/resources/pedWithSpaces.ped"), Arrays + .asList("Adam", "Eva", "Seth")); + pedigree.getMembers().forEach(System.out::println); + assertThat(pedigree.getMembers().size(), equalTo(3)); + assertContainsPerson(ADAM, pedigree); + assertContainsPerson(EVA, pedigree); + assertContainsPerson(SETH, pedigree); + } + + @Test(expected = PedigreeFactory.PedigreeCreationException.class) + public void testCreatePedigreeWithMoreThanOneFamilyInFile() { + instance.createPedigreeForSampleData(Paths.get("src/test/resources/pedMultiFamily.ped"), Arrays.asList("Adam", "Eva", "Seth")); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/RawScoreGeneScorerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/RawScoreGeneScorerTest.java new file mode 100644 index 000000000..f01904ef5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/RawScoreGeneScorerTest.java @@ -0,0 +1,381 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.analysis.util; + +import com.google.common.collect.Lists; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import de.charite.compbio.jannovar.pedigree.Disease; +import de.charite.compbio.jannovar.pedigree.PedPerson; +import de.charite.compbio.jannovar.pedigree.Pedigree; +import de.charite.compbio.jannovar.pedigree.Sex; +import htsjdk.variant.variantcontext.Allele; +import htsjdk.variant.variantcontext.Genotype; +import htsjdk.variant.variantcontext.GenotypeType; +import htsjdk.variant.variantcontext.VariantContext; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.MockPriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; +import static org.monarchinitiative.exomiser.core.analysis.util.TestAlleleFactory.*; + +/** + * + * @author Jules Jacobsen + */ +public class RawScoreGeneScorerTest { + + private static final FilterResult PASS_FREQUENCY = FilterResult.pass(FilterType.FREQUENCY_FILTER); + private static final FilterResult FAIL_FREQUENCY = FilterResult.fail(FilterType.FREQUENCY_FILTER); + private static final FilterResult PASS_PATHOGENICITY = FilterResult.pass(FilterType.PATHOGENICITY_FILTER); + private static final FilterResult FAIL_PATHOGENICITY = FilterResult.fail(FilterType.PATHOGENICITY_FILTER); + + private Gene newGene(VariantEvaluation... variantEvaluations) { + Gene gene = new Gene("TEST1", 1234); + Arrays.stream(variantEvaluations).forEach(gene::addVariant); + return gene; + } + + private VariantEvaluation failFreq() { + return VariantEvaluation.builder(1, 1, "A", "T") + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .filterResults(FAIL_FREQUENCY) + .build(); + } + + private VariantEvaluation passAllFrameShift() { + return VariantEvaluation.builder(1, 2, "A", "T") + .variantEffect(VariantEffect.FRAMESHIFT_VARIANT) + .filterResults(PASS_FREQUENCY, PASS_PATHOGENICITY) + .build(); + } + + VariantEvaluation passAllMissense() { + return VariantEvaluation.builder(1, 3, "A", "T") + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .filterResults(PASS_FREQUENCY, PASS_PATHOGENICITY) + .build(); + } + + VariantEvaluation passAllSynonymous() { + return VariantEvaluation.builder(1, 4, "A", "T") + .variantEffect(VariantEffect.SYNONYMOUS_VARIANT) + .filterResults(PASS_FREQUENCY, PASS_PATHOGENICITY) + .build(); + } + + private void scoreGene(Gene gene, ModeOfInheritance modeOfInheritance, int sampleId) { + scoreGene(gene, modeOfInheritance, sampleId, Pedigree.constructSingleSamplePedigree("sample")); + } + + private void scoreGene(Gene gene, ModeOfInheritance modeOfInheritance, int sampleId, Pedigree pedigree) { + RawScoreGeneScorer instance = new RawScoreGeneScorer(sampleId, modeOfInheritance, pedigree); + instance.scoreGene().accept(gene); + } + + @Test + public void testScoreGeneWithoutPriorityResultsOrVariants_UNINITIALIZED() { + Gene gene = newGene(); + scoreGene(gene, ModeOfInheritance.ANY, 0); + assertThat(gene.getVariantScore(), equalTo(0f)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testScoreGeneWithoutPriorityResultsOrVariants_AUTOSOMAL_DOMINANT() { + Gene gene = newGene(); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_DOMINANT, 0); + assertThat(gene.getVariantScore(), equalTo(0f)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testScoreGeneWithoutPriorityResultsOrVariants_AUTOSOMAL_RECESSIVE() { + Gene gene = newGene(); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE, 0); + assertThat(gene.getVariantScore(), equalTo(0f)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testScoreGeneWithSingleFailedVariant_UNINITIALIZED() { + Gene gene = newGene(failFreq()); + scoreGene(gene, ModeOfInheritance.ANY, 0); + assertThat(gene.getVariantScore(), equalTo(0f)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testScoreGeneWithSingleFailedVariant_AUTOSOMAL_DOMINANT() { + Gene gene = newGene(failFreq()); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_DOMINANT, 0); + assertThat(gene.getVariantScore(), equalTo(0f)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testScoreGeneWithSingleFailedVariant_AUTOSOMAL_RECESSIVE() { + Gene gene = newGene(failFreq()); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE, 0); + assertThat(gene.getVariantScore(), equalTo(0f)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testScoreGeneWithSinglePassedVariant_UNINITIALIZED() { + VariantEvaluation passAllFrameshift = passAllFrameShift(); + Gene gene = newGene(passAllFrameshift); + scoreGene(gene, ModeOfInheritance.ANY, 0); + + float variantScore = passAllFrameshift.getVariantScore(); + + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testScoreGeneWithSinglePassedVariant_AUTOSOMAL_DOMINANT() { + VariantEvaluation passAllFrameshift = passAllFrameShift(); + Gene gene = newGene(passAllFrameshift); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_DOMINANT, 0); + + float variantScore = passAllFrameshift.getVariantScore(); + + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testScoreGeneWithSinglePassedVariant_AUTOSOMAL_RECESSIVE_HOM_ALT() { + List alleles = buildAlleles("A", "T"); + + //Classical recessive inheritance mode + Genotype proband = buildSampleGenotype("Cain", alleles.get(1), alleles.get(1)); + assertThat(proband.getType(), equalTo(GenotypeType.HOM_VAR)); + + Genotype mother = buildSampleGenotype("Eve", alleles.get(0), alleles.get(1)); + assertThat(mother.getType(), equalTo(GenotypeType.HET)); + + Genotype father = buildSampleGenotype("Adam", alleles.get(1), alleles.get(0)); + assertThat(father.getType(), equalTo(GenotypeType.HET)); + + VariantContext variantContext = buildVariantContext(1, 12345, alleles, proband, mother, father); + System.out.println("Built variant context " + variantContext); + System.out.println("Proband sample 0 has genotype " + variantContext.getGenotype(0).getGenotypeString()); + + PedPerson probandPerson = new PedPerson("Family", "Cain", "Adam", "Eve", Sex.MALE, Disease.AFFECTED, new ArrayList<>()); + PedPerson motherPerson = new PedPerson("Family", "Eve", "0", "0", Sex.FEMALE, Disease.UNAFFECTED, new ArrayList<>()); + PedPerson fatherPerson = new PedPerson("Family", "Adam", "0", "0", Sex.MALE, Disease.UNAFFECTED, new ArrayList<>()); + Pedigree pedigree = buildPedigree(probandPerson, motherPerson, fatherPerson); + + VariantEvaluation probandHomAlt = filteredVariant(1, 12345, "A", "T", FilterResult.pass(FilterType.FREQUENCY_FILTER), variantContext, VariantEffect.MISSENSE_VARIANT); + Gene gene = newGene(probandHomAlt); + + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE, 0, pedigree); + + float variantScore = probandHomAlt.getVariantScore(); + + assertThat(probandHomAlt.contributesToGeneScore(), is(true)); + + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testScoreGeneWithSinglePassedVariant_AUTOSOMAL_RECESSIVE_HET() { + VariantEvaluation passAllFrameShift = passAllFrameShift(); + Gene gene = newGene(passAllFrameShift); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE, 0); + + //A single het allele can't be compatible with AR + assertThat(passAllFrameShift.contributesToGeneScore(), is(false)); + + assertThat(gene.getVariantScore(), equalTo(0f)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testScoreGeneWithSinglePassedAndSingleFailedVariantOnlyPassedVariantIsConsidered() { + VariantEvaluation passAllFrameshift = passAllFrameShift(); + + Gene gene = newGene(passAllFrameshift, failFreq()); + scoreGene(gene, ModeOfInheritance.ANY, 0); + + float variantScore = passAllFrameshift.getVariantScore(); + + assertThat(passAllFrameshift.contributesToGeneScore(), is(true)); + + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testScoreGeneWithTwoPassedVariants_UNINITIALIZED_inheritance() { + VariantEvaluation passAllMissense = passAllMissense(); + VariantEvaluation passAllFrameshift = passAllFrameShift(); + + Gene gene = newGene(passAllFrameshift, passAllMissense); + scoreGene(gene, ModeOfInheritance.ANY, 0); + + float variantScore = passAllFrameshift.getVariantScore(); + + assertThat(passAllFrameshift.contributesToGeneScore(), is(true)); + + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testScoreGeneWithTwoPassedVariants_AUTOSOMAL_DOMINANT_inheritance() { + VariantEvaluation passAllMissense = passAllMissense(); + VariantEvaluation passAllFrameshift = passAllFrameShift(); + + Gene gene = newGene(passAllFrameshift, passAllMissense); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_DOMINANT, 0); + + float variantScore = passAllFrameshift.getVariantScore(); + + assertThat(passAllFrameshift.contributesToGeneScore(), is(true)); + + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testScoreGeneWithTwoPassedVariants_X_DOMINANT_inheritance() { + VariantEvaluation passAllMissense = passAllMissense(); + VariantEvaluation passAllFrameshift = passAllFrameShift(); + + Gene gene = newGene(passAllFrameshift, passAllMissense); + scoreGene(gene, ModeOfInheritance.X_DOMINANT, 0); + + float variantScore = passAllFrameshift.getVariantScore(); + + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testScoreGeneWithTwoPassedVariants_AUTOSOMAL_RECESSIVE_inheritance() { + VariantEvaluation passAllMissense = passAllMissense(); + VariantEvaluation passAllFrameshift = passAllFrameShift(); + + Gene gene = newGene(passAllMissense, passAllFrameshift); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE, 0); + + float variantScore = (passAllFrameshift.getVariantScore() + passAllMissense.getVariantScore()) / 2f; + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testScoreGeneWithThreePassedVariants_AUTOSOMAL_RECESSIVE_inheritance() { + VariantEvaluation passAllMissense = passAllMissense(); + VariantEvaluation passAllSynonymous = passAllSynonymous(); + VariantEvaluation passAllFrameshift = passAllFrameShift(); + + Gene gene = newGene(passAllMissense, passAllSynonymous, passAllFrameshift); + scoreGene(gene, ModeOfInheritance.AUTOSOMAL_RECESSIVE, 0); + + float variantScore = (passAllFrameshift.getVariantScore() + passAllMissense.getVariantScore()) / 2f; + assertThat(passAllFrameshift.contributesToGeneScore(), is(true)); + assertThat(passAllMissense.contributesToGeneScore(), is(true)); + assertThat(passAllSynonymous.contributesToGeneScore(), is(false)); + + assertThat(gene.getVariantScore(), equalTo(variantScore)); + assertThat(gene.getPriorityScore(), equalTo(0f)); + assertThat(gene.getCombinedScore(), equalTo(variantScore / 2)); + } + + @Test + public void testGenesAreRankedAccordingToScore() { + Gene first = new Gene("FIRST", 1111); + first.addVariant(passAllFrameShift()); + first.addPriorityResult(new MockPriorityResult(PriorityType.HIPHIVE_PRIORITY, first.getEntrezGeneID(), first.getGeneSymbol(), 1d)); + + Gene middle = new Gene("MIDDLE", 2222); + middle.addVariant(passAllMissense()); + middle.addPriorityResult(new MockPriorityResult(PriorityType.HIPHIVE_PRIORITY, middle.getEntrezGeneID(), middle.getGeneSymbol(), 1d)); + + Gene last = new Gene("LAST", 3333); + last.addVariant(passAllSynonymous()); + last.addPriorityResult(new MockPriorityResult(PriorityType.HIPHIVE_PRIORITY, last.getEntrezGeneID(), last.getGeneSymbol(), 1d)); + + List genes = Lists.newArrayList(last, first, middle); + Collections.shuffle(genes); + + RawScoreGeneScorer instance = new RawScoreGeneScorer(0, ModeOfInheritance.ANY, Pedigree.constructSingleSamplePedigree("Nemo")); + instance.scoreGenes(genes); + + genes.forEach(System.out::println); + + assertThat(genes.indexOf(first), equalTo(0)); + assertThat(genes.indexOf(middle), equalTo(1)); + assertThat(genes.indexOf(last), equalTo(2)); + } + + ///Priority and Combined score tests + @Test + public void testCalculateCombinedScoreFromUnoptimisedPrioritiser() { + Gene gene = newGene(); + gene.addPriorityResult(new MockPriorityResult(PriorityType.OMIM_PRIORITY, gene.getEntrezGeneID(), gene.getGeneSymbol(), 1d)); + + scoreGene(gene, ModeOfInheritance.ANY, 0); + + assertThat(gene.getVariantScore(), equalTo(0f)); + assertThat(gene.getPriorityScore(), equalTo(1f)); + assertThat(gene.getCombinedScore(), equalTo(0.5f)); + } + + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/SampleNameCheckerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/SampleNameCheckerTest.java new file mode 100644 index 000000000..fdd15bf6f --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/SampleNameCheckerTest.java @@ -0,0 +1,98 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis.util; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.SampleMismatchException; + +import java.util.Arrays; +import java.util.Collections; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class SampleNameCheckerTest { + + @Test + public void testGetProbandSampleIdWithEmptyProbandNameAndEmptySampleNames() { + int sampleId = SampleNameChecker.getProbandSampleId("", Collections.emptyList()); + assertThat(sampleId, equalTo(0)); + } + + @Test + public void testGetProbandSampleIdWithProbandNameAndSampleNameMatch() { + int sampleId = SampleNameChecker.getProbandSampleId("David", Collections.singletonList("David")); + assertThat(sampleId, equalTo(0)); + } + + @Test(expected = SampleMismatchException.class) + public void testGetProbandSampleIdWithProbandNameAndEmptySampleNames() { + SampleNameChecker.getProbandSampleId("David", Collections.emptyList()); + } + + @Test(expected = SampleMismatchException.class) + public void testGetProbandSampleIdWithProbandNameAndSampleNameMisMatch() { + SampleNameChecker.getProbandSampleId("David", Collections.singletonList("Slartibartfast")); + } + + @Test(expected = SampleMismatchException.class) + public void testGetProbandSampleIdWithProbandNameAndSampleNamesMisMatch() { + SampleNameChecker.getProbandSampleId("David", Arrays.asList("Slartibartfast", "Homer")); + } + + @Test(expected = SampleMismatchException.class) + public void testGetProbandSampleIdWithEmptyProbandNameAndSampleNamesMisMatch() { + SampleNameChecker.getProbandSampleId("", Arrays.asList("Slartibartfast", "Homer")); + } + + @Test + public void testGetProbandSampleIdWithProbandNameAndSampleNamesMatchFirstInList() { + int sampleId = SampleNameChecker.getProbandSampleId("David", Arrays.asList("David", "Slartibartfast")); + assertThat(sampleId, equalTo(0)); + } + + @Test + public void testGetProbandSampleIdWithProbandNameAndSampleNamesMatchNotFirstInList() { + int sampleId = SampleNameChecker.getProbandSampleId("David", Arrays.asList("Slartibartfast", "David")); + assertThat(sampleId, equalTo(1)); + } + + @Test + public void testGetProbandSampleNameWithEmptyProbandNameAndNoSampleNameInList() { + String sampleName = SampleNameChecker.getProbandSampleName("", Collections.emptyList()); + assertThat(sampleName, equalTo("")); + } + + @Test + public void testGetProbandSampleNameWithEmptyProbandNameAndOneSampleNameInList() { + String sampleName = SampleNameChecker.getProbandSampleName("", Collections.singletonList("David")); + assertThat(sampleName, equalTo("David")); + } + + @Test(expected = SampleMismatchException.class) + public void testGetProbandSampleNameWithEmptyProbandNameAndMultipleSampleNamesInList() { + SampleNameChecker.getProbandSampleName("", Arrays.asList("Slartibartfast", "David")); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/TestAlleleFactory.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/TestAlleleFactory.java new file mode 100644 index 000000000..4ab0a3c21 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/analysis/util/TestAlleleFactory.java @@ -0,0 +1,144 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.analysis.util; + +import com.google.common.collect.ImmutableList; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.pedigree.*; +import htsjdk.variant.variantcontext.*; +import htsjdk.variant.variantcontext.Genotype; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; + +import static java.util.stream.Collectors.toList; + +/** + * Static utility class for setting up alleles and pedigrees. + * + * @author Jules Jacobsen + */ +public final class TestAlleleFactory { + + private TestAlleleFactory() { + + } + + public static VariantEvaluation filteredVariant(int chr, int pos, String ref, String alt, FilterResult filterResult) { + return VariantEvaluation.builder(chr, pos, ref, alt) + .filterResults(filterResult) + .build(); + } + + public static VariantEvaluation filteredVariant(int chr, int pos, String ref, String alt, FilterResult filterResult, VariantEffect variantEffect) { + return VariantEvaluation.builder(chr, pos, ref, alt) + .variantEffect(variantEffect) + .filterResults(filterResult) + .build(); + } + + public static VariantEvaluation filteredVariant(int chr, int pos, String ref, String alt, FilterResult filterResult, VariantContext variantContext) { + List altAlleles = variantContext.getAlternateAlleles(); + int altAlleleId = 0; + for (int i = 0; i < altAlleles.size(); i++) { + if (alt.equalsIgnoreCase(altAlleles.get(i).getBaseString())) { + altAlleleId = i; + } + } + + return VariantEvaluation.builder(chr, pos, ref, alt) + .altAlleleId(altAlleleId) + .variantContext(variantContext) + .filterResults(filterResult) + .build(); + } + + public static VariantEvaluation filteredVariant(int chr, int pos, String ref, String alt, FilterResult filterResult, VariantContext variantContext, VariantEffect variantEffect) { + List altAlleles = variantContext.getAlternateAlleles(); + int altAlleleId = 0; + for (int i = 0; i < altAlleles.size(); i++) { + if (alt.equalsIgnoreCase(altAlleles.get(i).getBaseString())) { + altAlleleId = i; + } + } + + return VariantEvaluation.builder(chr, pos, ref, alt) + .altAlleleId(altAlleleId) + .variantContext(variantContext) + .variantEffect(variantEffect) + .filterResults(filterResult) + .build(); + } + + public static List buildAlleles(String ref, String... alts) { + Allele refAllele = Allele.create(ref, true); + + List altAlleles = Arrays.asList(alts).stream().map(Allele::create).collect(toList()); + List alleles = new ArrayList<>(); + alleles.add(refAllele); + alleles.addAll(altAlleles); + return alleles; + } + + public static Genotype buildSampleGenotype(String sampleName, Allele ref, Allele alt) { + GenotypeBuilder gtBuilder = new GenotypeBuilder(sampleName).noAttributes() + .alleles(Arrays.asList(ref, alt)) + .phased(true); + return gtBuilder.make(); + } + + public static VariantContext buildVariantContext(int chr, int pos, List alleles, Genotype... genotypes) { + Allele refAllele = alleles.get(0); + + VariantContextBuilder vcBuilder = new VariantContextBuilder(); + vcBuilder.loc(Integer.toString(chr), pos, (pos - 1) + refAllele.length()); + vcBuilder.alleles(alleles); + vcBuilder.genotypes(genotypes); + //yeah I know, it's a zero + vcBuilder.log10PError(-0.1 * 0); + + return vcBuilder.make(); + } + + public static Pedigree buildPedigree(PedPerson... people) { + ImmutableList.Builder individualBuilder = new ImmutableList.Builder(); + individualBuilder.addAll(Arrays.asList(people)); + + PedFileContents pedFileContents = new PedFileContents(new ImmutableList.Builder().build(), individualBuilder + .build()); + + return buildPedigreeFromPedFile(pedFileContents); + + } + + public static Pedigree buildPedigreeFromPedFile(PedFileContents pedFileContents) { + final String name = pedFileContents.getIndividuals().get(0).getPedigree(); + try { + return new Pedigree(name, new PedigreeExtractor(name, pedFileContents).run()); + } catch (PedParseException e) { + throw new RuntimeException(e); + } + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterResultTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterResultTest.java new file mode 100644 index 000000000..f5ab0d3b5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/AbstractFilterResultTest.java @@ -0,0 +1,106 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class AbstractFilterResultTest { + + @Test + public void testGetFilterType() { + FilterType expResult = FilterType.FREQUENCY_FILTER; + + FilterResult instance = new PassFilterResult(expResult); + + FilterType result = instance.getFilterType(); + assertEquals(expResult, result); + } + + @Test + public void testPassedFilterIsTrueWhenFilterResultStatusIsPass() { + FilterResult instance = new PassFilterResult(FilterType.FREQUENCY_FILTER); + assertThat(instance.passed(), is(true)); + } + + @Test + public void testPassedFilterIsFalseWhenFilterResultStatusIsFail() { + FilterResult instance = new FailFilterResult(FilterType.FREQUENCY_FILTER); + assertThat(instance.passed(), is(false)); + } + +// @Test +// public void testGetResultStatus() { +// FilterResult instance = new PassFilterResult(FilterType.INTERVAL_FILTER); +// assertThat(instance.getResultStatus(), equalTo(FilterResultStatus.PASS)); +// } + + @Test + public void testHashCode() { + FilterResult instance = new FailFilterResult(FilterType.INTERVAL_FILTER); + FilterResult another = new FailFilterResult(FilterType.INTERVAL_FILTER); + int expResult = another.hashCode(); + int result = instance.hashCode(); + assertEquals(expResult, result); + } + + @Test + public void testNotEqualToNullObject() { + Object obj = null; + AbstractFilterResult instance = new FailFilterResult(FilterType.INTERVAL_FILTER); + assertThat(instance, not(equalTo(obj))); + } + + @Test + public void testNotEqualToDifferentFilterType() { + AbstractFilterResult other = new FailFilterResult(FilterType.BED_FILTER); + AbstractFilterResult instance = new FailFilterResult(FilterType.INTERVAL_FILTER); + assertThat(instance, not(equalTo(other))); + } + + @Test + public void testEqualToOtherFilterResult() { + AbstractFilterResult other = new FailFilterResult(FilterType.INTERVAL_FILTER); + AbstractFilterResult instance = new FailFilterResult(FilterType.INTERVAL_FILTER); + assertThat(instance, equalTo(other)); + } + + @Test + public void testToString() { + AbstractFilterResult instance = new PassFilterResult(FilterType.INTERVAL_FILTER); + String expResult = "Filter=Interval status=PASS"; + String result = instance.toString(); + assertEquals(expResult, result); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/EntrezGeneIdFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/EntrezGeneIdFilterTest.java new file mode 100644 index 000000000..d5055478a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/EntrezGeneIdFilterTest.java @@ -0,0 +1,112 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.HashSet; +import java.util.Set; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + + +/** + * + * @author Jules Jacobsen + */ +public class EntrezGeneIdFilterTest { + + private EntrezGeneIdFilter instance; + private Set genesToKeep; + + private static final int WANTED_GENE_ID = 1; + private static final int UNWANTED_GENE_ID = 0; + + private VariantEvaluation wantedPassesFilter; + private VariantEvaluation unwantedFailsFilter; + + @Before + public void setUp() { + initVariants(); + + genesToKeep = new HashSet<>(); + genesToKeep.add(WANTED_GENE_ID); + instance = new EntrezGeneIdFilter(genesToKeep); + } + + private void initVariants() { + wantedPassesFilter = VariantEvaluation.builder(1, 1, "A", "T").geneId(WANTED_GENE_ID).build(); + unwantedFailsFilter = VariantEvaluation.builder(1, 1, "A", "T").geneId(UNWANTED_GENE_ID).build(); + } + + @Test + public void testGetGeneIds() { + assertThat(instance.getGeneIds(), equalTo(genesToKeep)); + } + + @Test + public void testGetFilterType() { + assertThat(instance.getFilterType(), equalTo(FilterType.ENTREZ_GENE_ID_FILTER)); + } + + @Test + public void testRunFilterOnVariantWithWantedGeneIdPassesFilter() { + genesToKeep.add(wantedPassesFilter.getEntrezGeneId()); + + FilterResult filterResult = instance.runFilter(wantedPassesFilter); + + FilterTestHelper.assertPassed(filterResult); + assertThat(filterResult.getFilterType(), equalTo(FilterType.ENTREZ_GENE_ID_FILTER)); + } + + @Test + public void testRunFilterOnVariantWithUnWantedGeneIdFailsFilter() { + + FilterResult filterResult = instance.runFilter(unwantedFailsFilter); + + FilterTestHelper.assertFailed(filterResult); + assertThat(filterResult.getFilterType(), equalTo(FilterType.ENTREZ_GENE_ID_FILTER)); + } + + @Test + public void testHashCode() { + Filter otherFilter = new EntrezGeneIdFilter(genesToKeep); + assertThat(instance.hashCode(), equalTo(otherFilter.hashCode())); + } + + @Test + public void testEquals() { + } + + @Test + public void testToString() { + assertThat(instance.toString(), equalTo("EntrezGeneIdFilter{genesToKeep=[1]}")); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FailedVariantFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FailedVariantFilterTest.java new file mode 100644 index 000000000..0cb50d885 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FailedVariantFilterTest.java @@ -0,0 +1,82 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import htsjdk.variant.variantcontext.VariantContext; +import htsjdk.variant.vcf.VCFCodec; +import htsjdk.variant.vcf.VCFHeader; +import htsjdk.variant.vcf.VCFHeaderVersion; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class FailedVariantFilterTest { + + private final FailedVariantFilter instance = new FailedVariantFilter(); + + private final VCFCodec vcfCodec; + + public FailedVariantFilterTest() { + vcfCodec = new VCFCodec(); + vcfCodec.setVCFHeader(new VCFHeader(), VCFHeaderVersion.VCF4_2); + } + + private VariantEvaluation variantEvaluationWithFilterField(String filterField) { + //CHR\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO + String vcfLine = "1\t123456789\t.\tG\tA\t0\t" + filterField + "\t."; + + VariantContext variantContext = vcfCodec.decode(vcfLine); + System.out.println("Made variant context with filter field '" + filterField + "': " + variantContext + " FILTER=" + variantContext.getFilters()); + return VariantEvaluation.builder(1, 123456789, "G","A") + .variantContext(variantContext) + .build(); + } + + @Test + public void testPassesVariantWithPassFilterField() { + VariantEvaluation variant = variantEvaluationWithFilterField("PASS"); + FilterResult result = instance.runFilter(variant); + System.out.println(result); + assertThat(result.passed(), is(true)); + } + + @Test + public void testPassesVariantWithUnFilteredFilterField() { + VariantEvaluation variant = variantEvaluationWithFilterField("."); + FilterResult result = instance.runFilter(variant); + System.out.println(result); + assertThat(result.passed(), is(true)); + } + + @Test + public void testPassesVariantWithFailedFiltersInFilterField() { + VariantEvaluation variant = variantEvaluationWithFilterField("wibble;hoopy;frood"); + FilterResult result = instance.runFilter(variant); + System.out.println(result); + assertThat(result.failed(), is(true)); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterReportFactoryTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterReportFactoryTest.java new file mode 100644 index 000000000..347fa9ab9 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterReportFactoryTest.java @@ -0,0 +1,309 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.util.ArrayList; +import java.util.Collections; +import java.util.EnumSet; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.notNullValue; +import static org.junit.Assert.assertThat; + +/** + * Tests for FilterReportFactory. + * + * @author Jules Jacobsen + */ +public class FilterReportFactoryTest { + + private FilterReportFactory instance; + + private AnalysisResults analysisResults; + private List variantEvaluations; + private List genes; + + @Before + public void setUp() { + instance = new FilterReportFactory(); + + variantEvaluations = new ArrayList<>(); + genes = new ArrayList<>(); + analysisResults = AnalysisResults.builder() + .variantEvaluations(variantEvaluations) + .genes(genes) + .build(); + } + + private VariantEvaluation makeFailedVariant(FilterType filterType) { + return VariantEvaluation.builder(6, 1000000, "C", "T") + .filterResults(new FailFilterResult(filterType)) + .build(); + } + + private VariantEvaluation makePassedVariant(FilterType filterType) { + return VariantEvaluation.builder(6, 1000000, "C", "T") + .filterResults(new PassFilterResult(filterType)) + .build(); + } + + private Gene makeFailedGene(FilterType filterType) { + VariantEvaluation failedFilterVariantEvaluation = makeFailedVariant(filterType); + Gene failedFilterGene = new Gene("GENE1", 12345); + failedFilterGene.addVariant(failedFilterVariantEvaluation); + return failedFilterGene; + } + + private Gene makePassedGene(FilterType filterType) { + VariantEvaluation passedFilterVariantEvaluation = makePassedVariant(filterType); + Gene passedFilterGene = new Gene("GENE2", 67890); + passedFilterGene.addVariant(passedFilterVariantEvaluation); + return passedFilterGene; + } + + @Test + public void testMakeFilterReportsNoTypesSpecifiedReturnsEmptyList() { + List emptyFilterReportList = new ArrayList<>(); + + List reports = instance.makeFilterReports(Analysis.builder().build(), analysisResults); + + assertThat(reports, equalTo(emptyFilterReportList)); + } + + @Test + public void testMakeFilterReportsFrequencyPathogenicityTypesSpecifiedReturnsListWithTwoReports() { + Analysis analysis = Analysis.builder() + .addStep(new FrequencyFilter(0.1f)) + .addStep(new PathogenicityFilter(true)) + .build(); + + List reports = instance.makeFilterReports(analysis, analysisResults); + + assertThat(reports.size(), equalTo(analysis.getAnalysisSteps().size())); + } + + @Test + public void testMakeFilterReportsDecoratedFrequencyPathogenicityTypesSpecifiedReturnsListWithTwoReports() { + Analysis analysis = Analysis.builder() + .addStep(new FrequencyDataProvider(null, Collections.emptySet(), new KnownVariantFilter())) + .addStep(new FrequencyDataProvider(null, Collections.emptySet(), new FrequencyFilter(0.1f))) + .addStep(new PathogenicityDataProvider(null, Collections.emptySet(), new PathogenicityFilter(true))) + .build(); + + List reports = instance.makeFilterReports(analysis, analysisResults); + + assertThat(reports.size(), equalTo(analysis.getAnalysisSteps().size())); + assertThat(reports.get(0).getFilterType(), equalTo(FilterType.KNOWN_VARIANT_FILTER)); + assertThat(reports.get(1).getFilterType(), equalTo(FilterType.FREQUENCY_FILTER)); + assertThat(reports.get(2).getFilterType(), equalTo(FilterType.PATHOGENICITY_FILTER)); + } + + @Test + public void testMakeDefaultGeneFilterReportContainsCorrectNumberOfPassedAndFailedGenes() { + Filter filter = new InheritanceFilter(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + FilterType filterType = filter.getFilterType(); + + genes.add(makePassedGene(filterType)); + genes.add(makeFailedGene(filterType)); + + FilterReport report = instance.makeFilterReport(filter, analysisResults); + + assertThat(report.getPassed(), equalTo(1)); + assertThat(report.getFailed(), equalTo(1)); + } + + @Test + public void testMakeTargetFilterReport() { + VariantEffectFilter filter = new VariantEffectFilter(EnumSet.noneOf(VariantEffect.class)); + + FilterReport report = new FilterReport(filter.getFilterType(), 0, 0); + report.addMessage(String.format("Removed variants with effects of type: %s", filter.getOffTargetVariantTypes())); + + FilterReport result = instance.makeFilterReport(filter, analysisResults); + + assertThat(result, equalTo(report)); + } + + @Test + public void testMakeFrequencyFilterReportCanCopeWithNullFrequencyData() { + Filter filter = new FrequencyFilter(0.1f); + FilterType filterType = filter.getFilterType(); + + VariantEvaluation variantEvalWithNullFrequencyData = makeFailedVariant(filterType); + variantEvalWithNullFrequencyData.setFrequencyData(null); + variantEvaluations.add(variantEvalWithNullFrequencyData); + + FilterReport result = instance.makeFilterReport(filter, analysisResults); + + assertThat(result, notNullValue()); + } + + @Test + public void testMakeFrequencyFilterReport() { + Filter filter = new FrequencyFilter(0.0f); + FilterType filterType = filter.getFilterType(); + + VariantEvaluation completelyNovelVariantEval = makePassedVariant(filterType); + completelyNovelVariantEval.setFrequencyData(FrequencyData.empty()); + variantEvaluations.add(completelyNovelVariantEval); + + VariantEvaluation mostCommonVariantEvalInTheWorld = makeFailedVariant(filterType); + mostCommonVariantEvalInTheWorld.setFrequencyData(FrequencyData.of(RsId.valueOf(123456), Frequency.valueOf(100f, FrequencySource.THOUSAND_GENOMES), Frequency + .valueOf(100f, FrequencySource.ESP_ALL), Frequency.valueOf(100f, FrequencySource.EXAC_OTHER))); + variantEvaluations.add(mostCommonVariantEvalInTheWorld); + + FilterReport report = new FilterReport(filterType, 1, 1); + + report.addMessage("Variants filtered for maximum allele frequency of 0.00%"); + FilterReport result = instance.makeFilterReport(filter, analysisResults); + System.out.println(result); + assertThat(result, equalTo(report)); + } + + @Test + public void testMakeKnownVariantFilterReportProducesCorrectStatistics() { + Filter filter = new KnownVariantFilter(); + FilterType filterType = filter.getFilterType(); + + VariantEvaluation completelyNovelVariantEval = makePassedVariant(filterType); + completelyNovelVariantEval.setFrequencyData(FrequencyData.empty()); + variantEvaluations.add(completelyNovelVariantEval); + + VariantEvaluation mostCommonVariantEvalInTheWorld = makeFailedVariant(filterType); + mostCommonVariantEvalInTheWorld.setFrequencyData(FrequencyData.of(RsId.valueOf(123456), Frequency.valueOf(100f, FrequencySource.THOUSAND_GENOMES), Frequency + .valueOf(100f, FrequencySource.ESP_ALL), Frequency.valueOf(100f, FrequencySource.EXAC_OTHER))); + variantEvaluations.add(mostCommonVariantEvalInTheWorld); + + FilterReport report = new FilterReport(filterType, 1, 1); + + report.addMessage("Removed 1 variants with no RSID or frequency data (50.0%)"); + report.addMessage("dbSNP \"rs\" id available for 1 variants (50.0%)"); + report.addMessage("Data available in dbSNP (for 1000 Genomes Phase I) for 1 variants (50.0%)"); + report.addMessage("Data available in Exome Server Project for 1 variants (50.0%)"); + report.addMessage("Data available from ExAC Project for 1 variants (50.0%)"); + FilterReport result = instance.makeFilterReport(filter, analysisResults); + System.out.println(result); + + assertThat(result, equalTo(report)); + } + + @Test + public void testMakeQualityFilterReport() { + Filter filter = new QualityFilter(100.0f); + FilterType filterType = filter.getFilterType(); + + FilterReport report = new FilterReport(filterType, 0, 0); + report.addMessage("Variants filtered for mimimum PHRED quality of 100.0"); + + FilterReport result = instance.makeFilterReport(filter, analysisResults); + + assertThat(result, equalTo(report)); + } + + @Test + public void testMakePathogenicityFilterReportWhenRemovePathFilterCutOffIsTrue() { + Filter filter = new PathogenicityFilter(true); + FilterType filterType = FilterType.PATHOGENICITY_FILTER; + + FilterReport report = new FilterReport(filterType, 0, 0); + report.addMessage("Retained all non-pathogenic variants of all types. Scoring was applied, but the filter passed all variants."); + + FilterReport result = instance.makeFilterReport(filter, analysisResults); + + assertThat(result, equalTo(report)); + } + + @Test + public void testMakePathogenicityFilterReportWhenRemovePathFilterCutOffIsNotSpecified() { + Filter filter = new PathogenicityFilter(false); + FilterType filterType = FilterType.PATHOGENICITY_FILTER; + + FilterReport report = new FilterReport(filterType, 0, 0); + report.addMessage("Retained all non-pathogenic missense variants"); + + FilterReport result = instance.makeFilterReport(filter, analysisResults); + + assertThat(result, equalTo(report)); + } + + @Test + public void testMakeIntervalFilterReport() { + GeneticInterval interval = new GeneticInterval(1, 2, 3); + Filter filter = new IntervalFilter(interval); + FilterType filterType = FilterType.INTERVAL_FILTER; + + FilterReport report = new FilterReport(filterType, 0, 0); + report.addMessage(String.format("Restricted variants to interval: %s", interval)); + + FilterReport result = instance.makeFilterReport(filter, analysisResults); + + assertThat(result, equalTo(report)); + } + + @Test + public void testMakeInheritanceFilterReport() { + ModeOfInheritance expectedInheritanceMode = ModeOfInheritance.AUTOSOMAL_DOMINANT; + Filter filter = new InheritanceFilter(expectedInheritanceMode); + FilterType filterType = FilterType.INHERITANCE_FILTER; + + FilterReport report = new FilterReport(filterType, 0, 0); + report.addMessage("Genes filtered for compatibility with AUTOSOMAL_DOMINANT inheritance."); + + FilterReport result = instance.makeFilterReport(filter, analysisResults); + + assertThat(result, equalTo(report)); + } + + @Test + public void testMakePriorityScoreFilterReport() { + float minimumPriorityScore = 0.5f; + Filter filter = new PriorityScoreFilter(PriorityType.PHIVE_PRIORITY, minimumPriorityScore); + FilterType filterType = FilterType.PRIORITY_SCORE_FILTER; + + FilterReport report = new FilterReport(filterType, 0, 0); + report.addMessage("Genes filtered for minimum PHIVE_PRIORITY score of 0.5"); + + FilterReport result = instance.makeFilterReport(filter, analysisResults); + + assertThat(result, equalTo(report)); + } +} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterReportTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterReportTest.java similarity index 79% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterReportTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterReportTest.java index 9f522cfee..55e1751cf 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/FilterReportTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterReportTest.java @@ -1,35 +1,57 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.filters; +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Before; +import org.junit.Test; import java.util.ArrayList; import java.util.List; + import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.Test; +import static org.junit.Assert.assertThat; /** * * @author Jules Jacobsen */ public class FilterReportTest { - + FilterReport instance; private static final int PASSED = 12; private static final int FAILED = 345; private static final String MESSAGE = "hello"; - - + + public FilterReportTest() { } - + @Before public void setUp() { instance = new FilterReport(FilterType.FREQUENCY_FILTER, PASSED, FAILED); @@ -38,7 +60,7 @@ public void setUp() { @Test public void testGetFilterType() { FilterType expResult = FilterType.FREQUENCY_FILTER; - + assertThat(instance.getFilterType(), equalTo(expResult)); } @@ -51,9 +73,9 @@ public void testAddMessage() { public void testGetMessages() { List expectedMessages = new ArrayList<>(); expectedMessages.add(MESSAGE); - + instance.addMessage(MESSAGE); - + assertThat(instance.getMessages(), equalTo(expectedMessages)); } @@ -61,10 +83,10 @@ public void testGetMessages() { public void testHasMessagesIsFalseWhenNoMessagesAdded() { assertThat(instance.hasMessages(), is(false)); } - + @Test public void testHasMessagesIsTrueWhenMessagesAdded() { - + instance.addMessage(MESSAGE); assertThat(instance.hasMessages(), is(true)); @@ -95,26 +117,26 @@ public void testEqualsNullIsFalse() { Object obj = null; assertThat(instance.equals(obj), is(false)); } - + @Test public void testEqualsOtherClassIsFalse() { Object obj = "string"; assertThat(instance.equals(obj), is(false)); } - + @Test public void testEqualsOtherFilterReportWithDifferentMessageIsFalse() { instance.addMessage(MESSAGE); FilterReport other = new FilterReport(FilterType.FREQUENCY_FILTER, PASSED, FAILED); assertThat(instance.equals(other), is(false)); } - + @Test public void testEqualsOtherFilterReportWithOtherPassFailIsFalse() { FilterReport other = new FilterReport(FilterType.FREQUENCY_FILTER, FAILED, PASSED); assertThat(instance.equals(other), is(false)); } - + @Test public void testEqualsOtherFilterReport() { FilterReport other = new FilterReport(FilterType.FREQUENCY_FILTER, PASSED, FAILED); @@ -126,18 +148,18 @@ public void testNotEqualsOtherFilterReportWithDifferentFailedNumber() { FilterReport other = new FilterReport(FilterType.FREQUENCY_FILTER, PASSED, PASSED); assertThat(instance.equals(other), is(false)); } - + @Test public void testNotEqualsOtherFilterReportOfDifferentFilterType() { FilterReport other = new FilterReport(FilterType.INHERITANCE_FILTER, PASSED, FAILED); assertThat(instance.equals(other), is(false)); } - + @Test public void testToString() { String expResult = String.format("FilterReport for %s: pass:%d fail:%d %s", FilterType.FREQUENCY_FILTER, PASSED, FAILED, new ArrayList()); assertThat(instance.toString(), equalTo(expResult)); } - + } diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterSettingsImplTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterSettingsImplTest.java new file mode 100644 index 000000000..fb7121086 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterSettingsImplTest.java @@ -0,0 +1,170 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.FilterSettingsImpl.FilterSettingsBuilder; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; + +import java.util.LinkedHashSet; +import java.util.Set; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class FilterSettingsImplTest { + + private FilterSettings instance; + private FilterSettingsBuilder builder; + + private static final float MAX_FREQ_DEFAULT = 100.00f; + private static final float MIN_QUAL_DEFAULT = 0; + private static final GeneticInterval GENETIC_INTERVAL_DEFAULT = null; + private static final boolean KEEP_NON_PATHOGENIC_VARIANTS_DEFAULT = false; + private static final boolean REMOVE_FAILED_VARIANTS_DEFAULT = false; + private static final boolean REMOVE_KNOWN_VARIANTS_DEFAULT = false; + private static final boolean KEEP_OFF_TARGET_VARIANTS_DEFAULT = false; + private static final Set GENE_IDS_TO_KEEP_DEFAULT = new LinkedHashSet(); + private static final ModeOfInheritance MODE_OF_INHERITANCE_DEFAULT = ModeOfInheritance.ANY; + + @Before + public void setUp() { + builder = FilterSettingsImpl.builder(); + } + + @Test + public void testDefaultValues() { + instance = builder.build(); + assertThat(instance.getMaximumFrequency(), equalTo(MAX_FREQ_DEFAULT)); + assertThat(instance.getMinimumQuality(), equalTo(MIN_QUAL_DEFAULT)); + assertThat(instance.getGeneticInterval(), equalTo(GENETIC_INTERVAL_DEFAULT)); + assertThat(instance.keepNonPathogenicVariants(), equalTo(KEEP_NON_PATHOGENIC_VARIANTS_DEFAULT)); + assertThat(instance.removeFailedVariants(), equalTo(REMOVE_FAILED_VARIANTS_DEFAULT)); + assertThat(instance.removeKnownVariants(), equalTo(REMOVE_KNOWN_VARIANTS_DEFAULT)); + assertThat(instance.keepOffTargetVariants(), equalTo(KEEP_OFF_TARGET_VARIANTS_DEFAULT)); + assertThat(instance.getGenesToKeep(), equalTo(GENE_IDS_TO_KEEP_DEFAULT)); + assertThat(instance.getModeOfInheritance(), equalTo(MODE_OF_INHERITANCE_DEFAULT)); + } + + @Test + public void testMaximumFrequency() { + float maxFreq = 0.5f; + instance = builder.maximumFrequency(maxFreq).build(); + assertThat(instance.getMaximumFrequency(), equalTo(maxFreq)); + } + + @Test + public void testMinimumQuality() { + float minQual = 10f; + instance = builder.minimumQuality(minQual).build(); + assertThat(instance.getMinimumQuality(), equalTo(minQual)); + } + + @Test + public void testGeneticInterval() { + GeneticInterval interval = null; + instance = builder.geneticInterval(interval).build(); + assertThat(instance.getGeneticInterval(), nullValue()); + } + + @Test + public void testKeepNonPathogenic() { + boolean keepNonPathogenic = false; + instance = builder.keepNonPathogenic(keepNonPathogenic).build(); + assertThat(instance.keepNonPathogenicVariants(), equalTo(keepNonPathogenic)); + } + + @Test + public void testRemoveFailedVariants() { + boolean expected = true; + instance = builder.removeFailedVariants(expected).build(); + assertThat(instance.removeFailedVariants(), equalTo(expected)); + } + + @Test + public void testRemoveKnownVariants() { + boolean removeKnownVariants = true; + instance = builder.removeKnownVariants(removeKnownVariants).build(); + assertThat(instance.removeKnownVariants(), equalTo(removeKnownVariants)); + } + + @Test + public void testKeepOffTargetVariants() { + boolean keepOffTargetVariants = true; + instance = builder.keepOffTargetVariants(keepOffTargetVariants).build(); + assertThat(instance.keepOffTargetVariants(), equalTo(keepOffTargetVariants)); + } + + @Test + public void testGenesToKeep() { + Set genesToKeep = new LinkedHashSet<>(); + genesToKeep.add(1); + genesToKeep.add(2); + genesToKeep.add(3); + instance = builder.genesToKeep(genesToKeep).build(); + assertThat(instance.getGenesToKeep(), equalTo(genesToKeep)); + } + + @Test + public void testModeOfInheritance() { + ModeOfInheritance modeOfInheritance = ModeOfInheritance.AUTOSOMAL_DOMINANT; + instance = builder.modeOfInheritance(modeOfInheritance).build(); + assertThat(instance.getModeOfInheritance(), equalTo(modeOfInheritance)); + } + + @Test + public void testHashCode() { + FilterSettings other = FilterSettingsImpl.builder().build(); + instance = builder.build(); + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + + @Test + public void testEquals() { + FilterSettings other = FilterSettingsImpl.builder().build(); + instance = builder.build(); + assertThat(instance, equalTo(other)); + } + + @Test + public void testNotEquals() { + FilterSettings other = FilterSettingsImpl.builder().minimumQuality(Float.MAX_VALUE).build(); + instance = builder.build(); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testToString() { + instance = builder.build(); + System.out.println(instance); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterTestHelper.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterTestHelper.java new file mode 100644 index 000000000..363389041 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FilterTestHelper.java @@ -0,0 +1,42 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import static org.hamcrest.CoreMatchers.is; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class FilterTestHelper { + + private FilterTestHelper() { + //non-instantiable + } + + public static void assertPassed(FilterResult filterResult) { + assertThat("Expected passed " + filterResult.getFilterType() + " filter", filterResult.passed(), is(true)); + } + + public static void assertFailed(FilterResult filterResult) { + assertThat("Expected failed " + filterResult.getFilterType() + " filter", filterResult.failed(), is(true)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FrequencyDataProviderTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FrequencyDataProviderTest.java new file mode 100644 index 000000000..18ebaa240 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FrequencyDataProviderTest.java @@ -0,0 +1,149 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.genome.VariantDataServiceMock; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; + +import java.util.Collections; +import java.util.EnumSet; +import java.util.Set; + +import static org.hamcrest.MatcherAssert.assertThat; +import static org.hamcrest.core.Is.is; +import static org.hamcrest.core.IsEqual.equalTo; +import static org.monarchinitiative.exomiser.core.model.frequency.FrequencySource.*; + +/** + * @author Jules Jacobsen + */ +public class FrequencyDataProviderTest { + + private static final Set EMPTY_SET = Collections.emptySet(); + + private FrequencyDataProvider instance; + private VariantDataServiceMock variantDataService; + + private VariantEvaluation variant; + private final FrequencyData defaultFrequencyData = FrequencyData.empty(); + + @Before + public void setUp() { + variantDataService = new VariantDataServiceMock(); + variant = VariantEvaluation.builder(1, 1, "A", "T").frequencyData(defaultFrequencyData).build(); + } + + @Test + public void testReturnsFilterTypeOfDecoratedFilter_FrequencyFilter() { + final VariantFilter decoratedFilter = new FrequencyFilter(100f); + + instance = new FrequencyDataProvider(variantDataService, EMPTY_SET, decoratedFilter); + + assertThat(instance.getFilterType(), equalTo(decoratedFilter.getFilterType())); + assertThat(instance.isVariantFilter(), is(true)); + } + + @Test + public void testReturnsFilterTypeOfDecoratedFilter_KnownVariantFilter() { + final KnownVariantFilter decoratedFilter = new KnownVariantFilter(); + + instance = new FrequencyDataProvider(variantDataService, EMPTY_SET, decoratedFilter); + + assertThat(instance.getFilterType(), equalTo(decoratedFilter.getFilterType())); + assertThat(instance.isVariantFilter(), is(true)); + } + + @Test + public void testProvidesFrequencyDataForVariantWhenRun() { + FrequencyData expectedData = FrequencyData.of(RsId.valueOf(123456), Frequency.valueOf(1.0f, ESP_ALL)); + variantDataService.put(variant, expectedData); + + instance = new FrequencyDataProvider(variantDataService, EnumSet.allOf(FrequencySource.class), new KnownVariantFilter()); + assertThat(variant.getFrequencyData(), equalTo(defaultFrequencyData)); + + instance.runFilter(variant); + assertThat(variant.getFrequencyData(), equalTo(expectedData)); + } + + @Test + public void testFilterResultIsThatOfDecoratedFilter() { + final KnownVariantFilter decoratedFilter = new KnownVariantFilter(); + + instance = new FrequencyDataProvider(variantDataService, EMPTY_SET, decoratedFilter); + + FilterResult filterResult = instance.runFilter(variant); + FilterTestHelper.assertPassed(filterResult); + assertThat(filterResult.getFilterType(), equalTo(decoratedFilter.getFilterType())); + } + + @Test + public void testFrequencyDataOnlyContainsSpecifiedSources_NoDataInDatabase() { + final KnownVariantFilter decoratedFilter = new KnownVariantFilter(); + + instance = new FrequencyDataProvider(variantDataService, EnumSet.of(ESP_ALL), decoratedFilter); + instance.runFilter(variant); + + assertThat(variant.getFrequencyData(), equalTo(FrequencyData.empty())); + } + + @Test + public void testFrequencyDataOnlyContainsSpecifiedSources_OneSourceSpecifiedAllDataSourcesInDatabase() { + + Frequency espAll = Frequency.valueOf(0.01f, ESP_ALL); + FrequencyData variantFrequencyData = FrequencyData.of(RsId.valueOf(123456), espAll, Frequency.valueOf(0.234f, EXAC_AFRICAN_INC_AFRICAN_AMERICAN), Frequency + .valueOf(0.02f, EXAC_FINNISH)); + + variantDataService.put(variant, variantFrequencyData); + + instance = new FrequencyDataProvider(variantDataService, EnumSet.of(espAll.getSource()), new KnownVariantFilter()); + instance.runFilter(variant); + + assertThat(variant.getFrequencyData(), equalTo(FrequencyData.of(RsId.valueOf(123456), espAll))); + } + + @Test + public void testFrequencyDataOnlyContainsSpecifiedSources_TwoSourcesSpecifiedAllDataSourcesInDatabase() { + + Frequency espAll = Frequency.valueOf(0.01f, ESP_ALL); + Frequency exacAfr = Frequency.valueOf(0.234f, EXAC_AFRICAN_INC_AFRICAN_AMERICAN); + FrequencyData variantFrequencyData = FrequencyData.of(RsId.valueOf(123456), espAll, exacAfr, Frequency.valueOf(0.02f, EXAC_FINNISH)); + + variantDataService.put(variant, variantFrequencyData); + + instance = new FrequencyDataProvider(variantDataService, EnumSet.of(espAll.getSource(), exacAfr.getSource()), new KnownVariantFilter()); + instance.runFilter(variant); + + assertThat(variant.getFrequencyData(), equalTo(FrequencyData.of(RsId.valueOf(123456), espAll, exacAfr))); + } + + @Test + public void testGetDecoratedFilter() { + VariantFilter decoratedFilter = new KnownVariantFilter(); + instance = new FrequencyDataProvider(variantDataService, EnumSet.noneOf(FrequencySource.class), decoratedFilter); + assertThat(instance.getDecoratedFilter(), equalTo(decoratedFilter)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FrequencyFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FrequencyFilterTest.java new file mode 100644 index 000000000..549be0e4b --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/FrequencyFilterTest.java @@ -0,0 +1,187 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +public class FrequencyFilterTest { + + private FrequencyFilter instance; + + private VariantEvaluation passesEspAllFrequency; + private VariantEvaluation passesEspAAFrequency; + private VariantEvaluation passesEspEAFrequency; + private VariantEvaluation passesDbsnpFrequency; + + private VariantEvaluation failsFrequency; + private VariantEvaluation passesNoFrequencyData; + + private static final float FREQ_THRESHOLD = 0.1f; + private static final float PASS_FREQ = FREQ_THRESHOLD - 0.02f; + private static final float FAIL_FREQ = FREQ_THRESHOLD + 1.0f; + + private static final Frequency ESP_ALL_PASS = Frequency.valueOf(PASS_FREQ, FrequencySource.ESP_ALL); + private static final Frequency ESP_ALL_FAIL = Frequency.valueOf(FAIL_FREQ, FrequencySource.ESP_ALL); + + private static final Frequency ESP_AA_PASS = Frequency.valueOf(PASS_FREQ, FrequencySource.ESP_AFRICAN_AMERICAN); + + private static final Frequency ESP_EA_PASS = Frequency.valueOf(PASS_FREQ, FrequencySource.ESP_EUROPEAN_AMERICAN); + + private static final Frequency DBSNP_PASS = Frequency.valueOf(PASS_FREQ, FrequencySource.THOUSAND_GENOMES); + + private static final FrequencyData espAllPassData = FrequencyData.of(RsId.empty(), ESP_ALL_PASS); + private static final FrequencyData espAllFailData = FrequencyData.of(RsId.empty(), ESP_ALL_FAIL); + private static final FrequencyData espAaPassData = FrequencyData.of(RsId.empty(), ESP_AA_PASS); + private static final FrequencyData espEaPassData = FrequencyData.of(RsId.empty(), ESP_EA_PASS); + private static final FrequencyData dbSnpPassData = FrequencyData.of(RsId.empty(), DBSNP_PASS); + private static final FrequencyData noFreqData = FrequencyData.empty(); + + @Before + public void setUp() throws Exception { + + instance = new FrequencyFilter(FREQ_THRESHOLD); + + passesEspAllFrequency = makeTestVariantEvaluation(); + passesEspAllFrequency.setFrequencyData(espAllPassData); + + passesEspAAFrequency = makeTestVariantEvaluation(); + passesEspAAFrequency.setFrequencyData(espAaPassData); + + passesEspEAFrequency = makeTestVariantEvaluation(); + passesEspEAFrequency.setFrequencyData(espEaPassData); + + passesDbsnpFrequency = makeTestVariantEvaluation(); + passesDbsnpFrequency.setFrequencyData(dbSnpPassData); + + failsFrequency = makeTestVariantEvaluation(); + failsFrequency.setFrequencyData(espAllFailData); + + passesNoFrequencyData = makeTestVariantEvaluation(); + passesNoFrequencyData.setFrequencyData(noFreqData); + + } + + private VariantEvaluation makeTestVariantEvaluation() { + return VariantEvaluation.builder(1, 1, "A", "T").build(); + } + + @Test + public void getMaxFrequencyCutoff() { + assertThat(instance.getMaxFreq(), equalTo(FREQ_THRESHOLD)); + } + + @Test + public void testGetFilterType() { + assertThat(instance.getFilterType(), equalTo(FilterType.FREQUENCY_FILTER)); + } + + @Test(expected = IllegalArgumentException.class) + public void throwsIllegalArgumentExceptionWhenInstanciatedWithNegativeFrequency() { + instance = new FrequencyFilter(-1f); + } + + @Test(expected = IllegalArgumentException.class) + public void throwsIllegalArgumentExceptionWhenInstanciatedWithFrequencyGreaterThanOneHundredPercent() { + instance = new FrequencyFilter(101f); + } + + @Test + public void testFilterPassesVariantEvaluationWithFrequencyUnderThreshold() { + instance = new FrequencyFilter(FREQ_THRESHOLD); + System.out.println(passesEspAllFrequency + " " + passesEspAllFrequency.getFrequencyData()); + FilterResult filterResult = instance.runFilter(passesEspAllFrequency); + + FilterTestHelper.assertPassed(filterResult); + } + + @Test + public void testFilterPassesVariantEvaluationWithNoFrequencyData() { + FilterResult filterResult = instance.runFilter(passesNoFrequencyData); + FilterTestHelper.assertPassed(filterResult); + } + + @Test + public void testFilterFailsVariantEvaluationWithFrequencyDataAboveThreshold() { + FilterResult filterResult = instance.runFilter(failsFrequency); + FilterTestHelper.assertFailed(filterResult); + } + + @Test + public void testPassesFilterFails() { + assertThat(instance.passesFilter(espAllFailData), is(false)); + } + + @Test + public void testEaspAllPassesFilter() { + assertThat(instance.passesFilter(espAllPassData), is(true)); + } + + @Test + public void testNoFrequencyDataPassesFilter() { + assertThat(instance.passesFilter(noFreqData), is(true)); + } + + @Test + public void testHashCode() { + FrequencyFilter otherFilter = new FrequencyFilter(FREQ_THRESHOLD); + assertThat(instance.hashCode(), equalTo(otherFilter.hashCode())); + } + + @Test + public void testNotEqualNull() { + Object obj = null; + assertThat(instance.equals(obj), is(false)); + } + + @Test + public void testNotEqualOtherObject() { + Object obj = "Not equal to this"; + assertThat(instance.equals(obj), is(false)); + } + + @Test + public void testNotEqualOtherFrequencyFilterWithDifferentThreshold() { + FrequencyFilter otherFilter = new FrequencyFilter(FAIL_FREQ); + assertThat(instance.equals(otherFilter), is(false)); + } + + @Test + public void testEqualsSelf() { + assertThat(instance.equals(instance), is(true)); + } + + @Test + public void testToString() { + System.out.println(instance); + assertThat(instance.toString().isEmpty(), is(false)); + } + +} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/InheritanceFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/InheritanceFilterTest.java similarity index 77% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/InheritanceFilterTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/InheritanceFilterTest.java index ac706b0e1..859cfdf8c 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/InheritanceFilterTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/InheritanceFilterTest.java @@ -1,18 +1,40 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.filters; +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; import java.util.EnumSet; + import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.CoreMatchers.is; -import org.junit.Before; -import org.junit.Test; -import static org.junit.Assert.*; +import static org.junit.Assert.assertThat; /** * @@ -47,12 +69,12 @@ public void testGetModeOfInheritance() { @Test public void testGeneNotPassedOrFailedInheritanceFilterWhenInheritanceModeIsUnInitialised() { - ModeOfInheritance desiredInheritanceMode = ModeOfInheritance.UNINITIALIZED; + ModeOfInheritance desiredInheritanceMode = ModeOfInheritance.ANY; InheritanceFilter instance = new InheritanceFilter(desiredInheritanceMode); FilterResult filterResult = instance.runFilter(compatibleWithAutosomalRecessive); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.NOT_RUN)); + assertThat(filterResult.wasRun(), is(false)); } @Test @@ -61,7 +83,7 @@ public void testFilterGenePasses() { FilterResult filterResult = dominantFilter.runFilter(compatibleWithAutosomalDominant); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.PASS)); + FilterTestHelper.assertPassed(filterResult); } @Test @@ -70,7 +92,7 @@ public void testFilterGeneFails() { FilterResult filterResult = dominantFilter.runFilter(compatibleWithAutosomalRecessive); - assertThat(filterResult.getResultStatus(), equalTo(FilterResultStatus.FAIL)); + FilterTestHelper.assertFailed(filterResult); } @Test diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/IntervalFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/IntervalFilterTest.java new file mode 100644 index 000000000..dab6822fb --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/IntervalFilterTest.java @@ -0,0 +1,131 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class IntervalFilterTest { + + IntervalFilter instance = new IntervalFilter(SEARCH_INTERVAL); + + private static final byte RIGHT_CHR = 7; + private static final byte WRONG_CHR = 3; + private static final int START_REGION = 155595590; + private static final int END_REGION = 155604810; + + private static final int INSIDE_REGION = START_REGION + 20; + private static final int BEFORE_REGION = START_REGION - 20; + private static final int AFTER_REGION = END_REGION + 20; + + + private static final GeneticInterval SEARCH_INTERVAL = new GeneticInterval(RIGHT_CHR, START_REGION, END_REGION); + + private final VariantEvaluation rightChromosomeRightPosition = VariantEvaluation.builder(RIGHT_CHR, INSIDE_REGION, "A", "T") + .build(); + private final VariantEvaluation rightChromosomeWrongPosition = VariantEvaluation.builder(RIGHT_CHR, BEFORE_REGION, "A", "T") + .build(); + private final VariantEvaluation wrongChromosomeRightPosition = VariantEvaluation.builder(WRONG_CHR, INSIDE_REGION, "A", "T") + .build(); + private final VariantEvaluation wrongChromosomeWrongPosition = VariantEvaluation.builder(RIGHT_CHR, AFTER_REGION, "A", "T") + .build(); + + @Test + public void testGetInterval() { + assertThat(instance.getGeneticInterval(), equalTo(SEARCH_INTERVAL)); + } + + @Test + public void testThatRightChromosomeRightPositionPassesFilter() { + FilterResult filterResult = instance.runFilter(rightChromosomeRightPosition); + FilterTestHelper.assertPassed(filterResult); + } + + @Test + public void testThatRightChromosomeWrongPositionFailsFilter() { + FilterResult filterResult = instance.runFilter(rightChromosomeWrongPosition); + FilterTestHelper.assertFailed(filterResult); + } + + @Test + public void testThatWrongChromosomeRightPositionFailsFilter() { + FilterResult filterResult = instance.runFilter(wrongChromosomeRightPosition); + FilterTestHelper.assertFailed(filterResult); + } + + @Test + public void testThatWrongChromosomeWrongPositionFailsFilter() { + FilterResult filterResult = instance.runFilter(wrongChromosomeWrongPosition); + FilterTestHelper.assertFailed(filterResult); + } + + @Test + public void testGetFilterType() { + assertThat(instance.getFilterType(), equalTo(FilterType.INTERVAL_FILTER)); + } + + @Test + public void testHashCode() { + IntervalFilter otherFilter = new IntervalFilter(SEARCH_INTERVAL); + assertThat(instance.hashCode(), equalTo(otherFilter.hashCode())); + } + + @Test + public void testNotEquals() { + Object obj = null; + assertThat(instance.equals(obj), is(false)); + } + + @Test + public void testNotEqualsIntervalDifferent() { + IntervalFilter otherFilter = new IntervalFilter(GeneticInterval.parseString(HG19RefDictBuilder.build(), + "chr3:12334-67850")); + assertThat(instance.equals(otherFilter), is(false)); + } + + @Test + public void testIsEquals() { + IntervalFilter otherFilter = new IntervalFilter(SEARCH_INTERVAL); + assertThat(instance.equals(otherFilter), is(true)); + } + + @Test + public void testToString() { + System.out.println(instance.toString()); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/KnownVariantFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/KnownVariantFilterTest.java new file mode 100644 index 000000000..bc1a47e80 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/KnownVariantFilterTest.java @@ -0,0 +1,81 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class KnownVariantFilterTest { + + private final VariantFilter instance = new KnownVariantFilter(); + + private final FilterResult PASS_RESULT = new PassFilterResult(FilterType.KNOWN_VARIANT_FILTER); + private final FilterResult FAIL_RESULT = new FailFilterResult(FilterType.KNOWN_VARIANT_FILTER); + + private VariantEvaluation buildVariantWithFrequencyData(FrequencyData frequencyData) { + return VariantEvaluation.builder(1, 1, "A", "T").frequencyData(frequencyData).build(); + } + + @Test + public void testVariantType() { + assertThat(instance.getFilterType(), equalTo(FilterType.KNOWN_VARIANT_FILTER)); + } + + @Test + public void testRunFilter_ReturnsFailResultWhenFilteringVariantWithRsId() { + FrequencyData frequencyData = FrequencyData.of(RsId.valueOf(12345)); + VariantEvaluation variantEvaluation = buildVariantWithFrequencyData(frequencyData); + FilterResult filterResult = instance.runFilter(variantEvaluation); + assertThat(filterResult, equalTo(FAIL_RESULT)); + } + + @Test + public void testRunFilter_ReturnsFailResultWhenFilteringVariantWithKnownFrequency() { + FrequencyData frequencyData = FrequencyData.of(RsId.empty(), Frequency.valueOf(1f, FrequencySource.THOUSAND_GENOMES)); + VariantEvaluation variantEvaluation = buildVariantWithFrequencyData(frequencyData); + FilterResult filterResult = instance.runFilter(variantEvaluation); + assertThat(filterResult, equalTo(FAIL_RESULT)); + } + + @Test + public void testRunFilter_ReturnsPassResultWhenFilteringVariantWithNoRepresentationInDatabase() { + VariantEvaluation variantEvaluation = buildVariantWithFrequencyData(FrequencyData.empty()); + FilterResult filterResult = instance.runFilter(variantEvaluation); + assertThat(filterResult, equalTo(PASS_RESULT)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PassAllVariantEffectsFilter.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PassAllVariantEffectsFilter.java new file mode 100644 index 000000000..ba30ce96c --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PassAllVariantEffectsFilter.java @@ -0,0 +1,54 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.EnumSet; + +/** + * Mock variant effect filter which will always return a PASS FilterResult with a score of 1.0. + * + * @author Jules Jacobsen + */ +public class PassAllVariantEffectsFilter extends VariantEffectFilter { + + public PassAllVariantEffectsFilter() { + super(EnumSet.noneOf(VariantEffect.class)); + } + + @Override + public FilterType getFilterType() { + return FilterType.VARIANT_EFFECT_FILTER; + } + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + return new PassFilterResult(FilterType.VARIANT_EFFECT_FILTER); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PathogenicityDataProviderTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PathogenicityDataProviderTest.java new file mode 100644 index 000000000..39b576f36 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PathogenicityDataProviderTest.java @@ -0,0 +1,102 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.genome.VariantDataServiceMock; +import org.monarchinitiative.exomiser.core.model.FilterStatus; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.pathogenicity.*; + +import java.util.Collections; +import java.util.EnumSet; +import java.util.Set; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; +import static org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource.*; + +/** + * + * @author Jules Jacobsen + */ +public class PathogenicityDataProviderTest { + + private static final Set EMPTY_SET = Collections.emptySet(); + + private PathogenicityDataProvider instance; + private VariantDataServiceMock variantDataService; + + private VariantEvaluation variant; + private static final PathogenicityData EXPECTED_PATH_DATA = PathogenicityData.of(PolyPhenScore.valueOf(1f), SiftScore + .valueOf(0f), MutationTasterScore.valueOf(1f)); + private static final PathogenicityData EMPTY_PATH_DATA = PathogenicityData.empty(); + + @Before + public void setUp() { + variantDataService = new VariantDataServiceMock(); + variant = VariantEvaluation.builder(1, 1, "A", "T").pathogenicityData(EMPTY_PATH_DATA).build(); + variantDataService.put(variant, EXPECTED_PATH_DATA); + } + + @Test + public void testProvideVariantData() { + instance = new PathogenicityDataProvider(variantDataService, EnumSet.of(POLYPHEN, SIFT, MUTATION_TASTER), new StubPassAllVariantFilter(FilterType.PATHOGENICITY_FILTER)); + + assertThat(variant.getPathogenicityData(), equalTo(EMPTY_PATH_DATA)); + instance.provideVariantData(variant); + assertThat(variant.getPathogenicityData(), equalTo(EXPECTED_PATH_DATA)); + } + + @Test + public void testRunFilter() { + FilterType variantFilterType = FilterType.PATHOGENICITY_FILTER; + instance = new PathogenicityDataProvider(variantDataService, EnumSet.of(POLYPHEN, SIFT, MUTATION_TASTER), new StubPassAllVariantFilter(variantFilterType)); + + assertThat(variant.getPathogenicityData(), equalTo(EMPTY_PATH_DATA)); + assertThat(variant.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); + + FilterResult filterResult = instance.runFilter(variant); + + assertThat(variant.getPathogenicityData(), equalTo(EXPECTED_PATH_DATA)); + assertThat(filterResult.getFilterType(), equalTo(variantFilterType)); + } + + @Test + public void testGetFilterType() { + VariantFilter decoratedFilter = new PathogenicityFilter(true); + instance = new PathogenicityDataProvider(variantDataService, EMPTY_SET, decoratedFilter); + assertThat(instance.getFilterType(), equalTo(decoratedFilter.getFilterType())); + } + + @Test + public void testGetDecoratedFilter() { + VariantFilter decoratedFilter = new PathogenicityFilter(true); + instance = new PathogenicityDataProvider(variantDataService, EMPTY_SET, decoratedFilter); + assertThat(instance.getDecoratedFilter(), equalTo(decoratedFilter)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PathogenicityFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PathogenicityFilterTest.java new file mode 100644 index 000000000..034f252ef --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PathogenicityFilterTest.java @@ -0,0 +1,199 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.pathogenicity.MutationTasterScore; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PolyPhenScore; +import org.monarchinitiative.exomiser.core.model.pathogenicity.SiftScore; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PathogenicityFilterTest { + + private PathogenicityFilter instance; + + private static final boolean PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS = false; + private static final boolean PASS_ALL_VARIANTS = true; + + VariantEvaluation missensePassesFilter; + VariantEvaluation downstreamFailsFilter; + VariantEvaluation stopGainPassesFilter; + VariantEvaluation predictedNonPathogenicMissense; + + private static final float SIFT_PASS_SCORE = SiftScore.SIFT_THRESHOLD - 0.01f; + private static final float SIFT_FAIL_SCORE = SiftScore.SIFT_THRESHOLD + 0.01f; + + private static final SiftScore SIFT_PASS = SiftScore.valueOf(SIFT_PASS_SCORE); + private static final SiftScore SIFT_FAIL = SiftScore.valueOf(SIFT_FAIL_SCORE); + + private static final float POLYPHEN_PASS_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f; + private static final float POLYPHEN_FAIL_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD - 0.1f; + + private static final PolyPhenScore POLYPHEN_PASS = PolyPhenScore.valueOf(POLYPHEN_PASS_SCORE); + private static final PolyPhenScore POLYPHEN_FAIL = PolyPhenScore.valueOf(POLYPHEN_FAIL_SCORE); + + private static final float MTASTER_PASS_SCORE = MutationTasterScore.MTASTER_THRESHOLD + 0.01f; + private static final float MTASTER_FAIL_SCORE = MutationTasterScore.MTASTER_THRESHOLD - 0.01f; + + private static final MutationTasterScore MTASTER_PASS = MutationTasterScore.valueOf(MTASTER_PASS_SCORE); + private static final MutationTasterScore MTASTER_FAIL = MutationTasterScore.valueOf(MTASTER_FAIL_SCORE); + + @Before + public void setUp() { + + instance = new PathogenicityFilter(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS); + + // make the variant evaluations + missensePassesFilter = testVariantBuilder() + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .pathogenicityData(PathogenicityData.of(SIFT_PASS)) + .build(); + + predictedNonPathogenicMissense = testVariantBuilder() + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .pathogenicityData(PathogenicityData.of(POLYPHEN_FAIL)) + .build(); + + downstreamFailsFilter = testVariantBuilder() + .variantEffect(VariantEffect.DOWNSTREAM_GENE_VARIANT) + .pathogenicityData(PathogenicityData.empty()) + .build(); + + stopGainPassesFilter = testVariantBuilder() + .variantEffect(VariantEffect.STOP_GAINED) + .pathogenicityData(PathogenicityData.empty()) + .build(); + } + + private VariantEvaluation.Builder testVariantBuilder() { + return VariantEvaluation.builder(1, 1, "A", "T"); + } + + @Test + public void test() { + assertThat(instance.keepNonPathogenic(), equalTo(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS)); + } + + @Test + public void testThatOffTargetNonPathogenicVariantsAreStillScoredAndFailFilterWhenPassAllVariantsSetFalse() { + instance = new PathogenicityFilter(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS); + + FilterResult filterResult = instance.runFilter(downstreamFailsFilter); + + FilterTestHelper.assertFailed(filterResult); + } + + @Test + public void testThatOffTargetNonPathogenicVariantsAreStillScoredAndPassFilterWhenPassAllVariantsSetTrue() { + instance = new PathogenicityFilter(PASS_ALL_VARIANTS); + + FilterResult filterResult = instance.runFilter(downstreamFailsFilter); + + FilterTestHelper.assertPassed(filterResult); + } + + @Test + public void testThatMissenseNonPathogenicVariantsAreStillScoredAndPassFilterWhenPassAllVariantsSetTrue() { + instance = new PathogenicityFilter(PASS_ALL_VARIANTS); + + FilterResult filterResult = instance.runFilter(predictedNonPathogenicMissense); + + FilterTestHelper.assertPassed(filterResult); + } + + @Test + public void testThatMissenseNonPathogenicVariantsAreStillScoredAndPassFilterWhenPassAllVariantsSetFalse() { + instance = new PathogenicityFilter(PASS_ONLY_PATHOGENIC_AND_MISSENSE_VARIANTS); + + FilterResult filterResult = instance.runFilter(predictedNonPathogenicMissense); + + FilterTestHelper.assertPassed(filterResult); + } + + @Test + public void testGetFilterType() { + assertThat(instance.getFilterType(), equalTo(FilterType.PATHOGENICITY_FILTER)); + } + + @Test + public void testToString() { + String expResult = "PathogenicityFilter{keepNonPathogenic=false}"; + String result = instance.toString(); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testEqualToOtherPathogenicityFilter() { + instance = new PathogenicityFilter(false); + PathogenicityFilter other = new PathogenicityFilter(false); + assertThat(instance.equals(other), is(true)); + } + + @Test + public void testNotEqualToOtherPathogenicityFilter() { + instance = new PathogenicityFilter(false); + PathogenicityFilter other = new PathogenicityFilter(true); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEqualToOtherFilterType() { + instance = new PathogenicityFilter(false); + Filter other = new FrequencyFilter(0.1f); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEqualToObjectOfDifferentType() { + Object other = "a string"; + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEqualToNullObject() { + Object other = null; + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testHashCode() { + instance = new PathogenicityFilter(false); + PathogenicityFilter other = new PathogenicityFilter(false); + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PriorityScoreFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PriorityScoreFilterTest.java new file mode 100644 index 000000000..4038a33e0 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/PriorityScoreFilterTest.java @@ -0,0 +1,194 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.MockPriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import static org.hamcrest.CoreMatchers.*; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PriorityScoreFilterTest { + + private PriorityScoreFilter instance; + + private final PriorityType priorityType = PriorityType.PHIVE_PRIORITY; + private final float minPriorityScore = 0.8f; + + private Gene gene; + + @Before + public void setUp() { + instance = new PriorityScoreFilter(priorityType, minPriorityScore); + gene = new Gene("GENE1", 12345); + } + + private void assertPasses(FilterResult result) { + assertThat(result.passed(), is(true)); + assertThat(result.getFilterType(), equalTo(instance.getFilterType())); + } + + private void assertFails(FilterResult result) { + assertThat(result.failed(), is(true)); + assertThat(result.getFilterType(), equalTo(instance.getFilterType())); + } + + @Test + public void testGetPriorityType() { + assertThat(instance.getPriorityType(), equalTo(priorityType)); + } + + @Test + public void testGetMinPriorityScore() { + assertThat(instance.getMinPriorityScore(), equalTo(minPriorityScore)); + } + + @Test + public void testGetFilterType() { + assertThat(instance.getFilterType(), equalTo(FilterType.PRIORITY_SCORE_FILTER)); + } + + @Test + public void testRunFilter_FailsGeneWithWrongPriorityType_ScoreSameAsThreshold() { + PriorityResult priorityResult = new MockPriorityResult(PriorityType.OMIM_PRIORITY, gene.getEntrezGeneID(), gene.getGeneSymbol(), minPriorityScore); + gene.addPriorityResult(priorityResult); + + FilterResult result = instance.runFilter(gene); + + assertFails(result); + } + + @Test + public void testRunFilter_PassesGeneWithCorrectPriorityType_ScoreSameAsThreshold() { + PriorityResult priorityResult = makeDefaultPriorityResult(minPriorityScore); + gene.addPriorityResult(priorityResult); + + FilterResult result = instance.runFilter(gene); + + assertPasses(result); + } + + @Test + public void testRunFilter_PassesGeneWithCorrectPriorityType_ScoreOverThreshold() { + PriorityResult priorityResult = makeDefaultPriorityResult(minPriorityScore + 0.2f); + gene.addPriorityResult(priorityResult); + + FilterResult result = instance.runFilter(gene); + + assertPasses(result); + } + + @Test + public void testRunFilter_FailsGeneWithCorrectPriorityType_ScoreUnderThreshold() { + PriorityResult priorityResult = makeDefaultPriorityResult(minPriorityScore - 0.2f); + gene.addPriorityResult(priorityResult); + + FilterResult result = instance.runFilter(gene); + + assertFails(result); + } + + @Test + public void testRunFilter_VariantInFailedGeneAlsoFailsTheFilter() { + PriorityResult priorityResult = makeDefaultPriorityResult(minPriorityScore - 0.2f); + gene.addPriorityResult(priorityResult); + VariantEvaluation variant = VariantEvaluation.builder(1, 1, "A", "T").build(); + gene.addVariant(variant); + + FilterResult result = instance.runFilter(gene); + + assertFails(result); + assertThat(variant.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(false)); + assertThat(variant.getFailedFilterTypes(), hasItem(FilterType.PRIORITY_SCORE_FILTER)); + } + + private PriorityResult makeDefaultPriorityResult(float score) { + return new MockPriorityResult(priorityType, gene.getEntrezGeneID(), gene.getGeneSymbol(), score); + } + + @Test + public void testRunFilter_FailsGeneWithNoSetPriorityScore() { + FilterResult result = instance.runFilter(gene); + + assertFails(result); + } + + + @Test + public void testHashCode() { + PriorityScoreFilter other = new PriorityScoreFilter(priorityType, minPriorityScore); + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + + @Test + public void testEquals() { + PriorityScoreFilter other = new PriorityScoreFilter(priorityType, minPriorityScore); + assertThat(instance.equals(other), is(true)); + + } + + @Test + public void testNotEquals_differentScore() { + PriorityScoreFilter other = new PriorityScoreFilter(priorityType, minPriorityScore + .03f); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEquals_differentPrioritiser() { + PriorityScoreFilter other = new PriorityScoreFilter(PriorityType.NONE, minPriorityScore); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEqualOtherObject() { + String string = "string"; + assertThat(instance.equals(string), is(false)); + assertThat(string.equals(instance), is(false)); + + } + + @Test + public void testNotEqualNull() { + Object object = null; + assertThat(instance.equals(object), is(false)); + } + + @Test + public void testToString() { + assertThat(instance.toString(), equalTo("PriorityScoreFilter{priorityType=PHIVE_PRIORITY, minPriorityScore=0.8}")); + } + +} + diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/QualityFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/QualityFilterTest.java new file mode 100644 index 000000000..0e77b2ce4 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/QualityFilterTest.java @@ -0,0 +1,130 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class QualityFilterTest { + + private QualityFilter instance; + + private static final double MIN_QUAL_THRESHOLD = 3.0f; + private static final double OVER_THRESHOLD = MIN_QUAL_THRESHOLD + 1.0f; + private static final double UNDER_THRESHOLD = MIN_QUAL_THRESHOLD - 1.0f; + + private final VariantEvaluation highQualityPassesFilter = VariantEvaluation.builder(1, 1, "A", "T") + .quality(OVER_THRESHOLD) + .build(); + + private final VariantEvaluation lowQualityFailsFilter = VariantEvaluation.builder(1, 1, "A", "T") + .quality(UNDER_THRESHOLD) + .build(); + + @Before + public void setUp() { + instance = new QualityFilter(MIN_QUAL_THRESHOLD); + } + + @Test + public void testGetMimimumQualityThreshold() { + assertThat(instance.getMimimumQualityThreshold(), equalTo(MIN_QUAL_THRESHOLD)); + } + + @Test + public void testGetFilterType() { + assertThat(instance.getFilterType(), equalTo(FilterType.QUALITY_FILTER)); + } + + @Test(expected = IllegalArgumentException.class) + public void filterThrowIllegalArgumentExceptionWhenInitialisedWithNegativeValue() { + instance = new QualityFilter(-1); + } + + @Test + public void testFilterVariantOfHighQualityPassesFilter() { + FilterResult filterResult = instance.runFilter(highQualityPassesFilter); + + FilterTestHelper.assertPassed(filterResult); + } + + @Test + public void testFilterVariantOfLowQualityFailsFilter() { + FilterResult filterResult = instance.runFilter(lowQualityFailsFilter); + + FilterTestHelper.assertFailed(filterResult); + } + + @Test + public void testPassesFilterOverThresholdIsTrue() { + assertThat(instance.overQualityThreshold(OVER_THRESHOLD), is(true)); + } + + @Test + public void testPassesFilterUnderThresholdIsFalse() { + assertThat(instance.overQualityThreshold(UNDER_THRESHOLD), is(false)); + } + + @Test + public void testHashCode() { + VariantFilter qualityFilter = new QualityFilter(MIN_QUAL_THRESHOLD); + assertThat(instance.hashCode(), equalTo(qualityFilter.hashCode())); + } + + @Test + public void testNotEqualNull() { + Object obj = null; + assertThat(instance.equals(obj), is(false)); + } + + @Test + public void testNotEqualAnotherClass() { + Object obj = new String(); + assertThat(instance.equals(obj), is(false)); + } + + @Test + public void testNotEqualToOtherWithDifferentQualityThreshold() { + Object obj = new QualityFilter(8.0f); + assertThat(instance.equals(obj), is(false)); + } + + @Test + public void testEqualToOtherWithSameQualityThreshold() { + Object obj = new QualityFilter(MIN_QUAL_THRESHOLD); + assertThat(instance.equals(obj), is(true)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/RegulatoryFeatureFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/RegulatoryFeatureFilterTest.java new file mode 100644 index 000000000..3c32d6752 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/RegulatoryFeatureFilterTest.java @@ -0,0 +1,64 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.junit.Before; +import org.junit.Test; + +/** + * + * @author jj8 + */ +public class RegulatoryFeatureFilterTest { + + public RegulatoryFeatureFilterTest() { + } + + @Before + public void setUp() { + } + + @Test + public void testGetFilterType() { + } + + @Test + public void testRunFilter() { + } + + @Test + public void testHashCode() { + } + + @Test + public void testEquals() { + } + + @Test + public void testToString() { + } + +} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SimpleGeneFilterRunnerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SimpleGeneFilterRunnerTest.java similarity index 76% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SimpleGeneFilterRunnerTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SimpleGeneFilterRunnerTest.java index 53ef9f8e7..ffe2ff020 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SimpleGeneFilterRunnerTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SimpleGeneFilterRunnerTest.java @@ -1,23 +1,45 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.filters; +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.FilterStatus; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.FilterStatus; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; import java.util.ArrayList; import java.util.EnumSet; import java.util.List; import java.util.Set; + import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.CoreMatchers.is; import static org.hamcrest.MatcherAssert.assertThat; -import org.junit.Before; -import org.junit.Test; /** * @@ -60,8 +82,8 @@ private Gene makeGeneWithVariants(String geneSymbol, int geneId, Set filters, FilterStatu for (VariantEvaluation variantEvaluation : gene.getVariantEvaluations()) { System.out.println(variantEvaluation); } - + assertThat(gene.passedFilters(), equalTo(hasPassed)); for (GeneFilter filter : filters) { FilterType filterType = filter.getFilterType(); @@ -106,7 +128,7 @@ public void testRun_MultipleFiltersOverGenes() { assertVariantsUnfilteredAndDoNotPassFilter(genes, filters); instance.run(filters, genes); - + assertFilterStatus(passGene, filters, FilterStatus.PASSED); assertFilterStatus(failGene, filters, FilterStatus.FAILED); } diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SimpleVariantFilterRunnerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SimpleVariantFilterRunnerTest.java similarity index 76% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SimpleVariantFilterRunnerTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SimpleVariantFilterRunnerTest.java index c588d5901..be779291b 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SimpleVariantFilterRunnerTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SimpleVariantFilterRunnerTest.java @@ -1,32 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.filters; - -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.factories.VariantDataServiceMock; -import static de.charite.compbio.exomiser.core.filters.FilterType.*; -import de.charite.compbio.exomiser.core.model.Variant; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.model.frequency.Frequency; -import de.charite.compbio.exomiser.core.model.frequency.FrequencyData; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.frequency.RsId; +package org.monarchinitiative.exomiser.core.filters; + import de.charite.compbio.jannovar.annotation.VariantEffect; -import java.util.ArrayList; -import java.util.Arrays; -import java.util.EnumSet; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Set; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.genome.VariantDataServiceMock; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; + +import java.util.*; + import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.CoreMatchers.is; import static org.junit.Assert.assertThat; -import org.junit.Before; -import org.junit.Test; +import static org.monarchinitiative.exomiser.core.filters.FilterType.*; /** * @@ -61,10 +77,22 @@ public class SimpleVariantFilterRunnerTest { @Before public void setUp() { - passesAllFilters = new VariantEvaluation.VariantBuilder(1, 1, "A", "T").quality(PASS_QUALITY).variantEffect(PASS_VARIANT_EFFECT).build(); - failsAllFilters = new VariantEvaluation.VariantBuilder(2, 2, "A", "T").quality(FAIL_QUALITY).variantEffect(FAIL_VARIANT_EFFECT).build(); - passesQualityFrequencyFilter = new VariantEvaluation.VariantBuilder(3, 3, "A", "T").quality(PASS_QUALITY).variantEffect(FAIL_VARIANT_EFFECT).build(); - passesTargetQualityFilter = new VariantEvaluation.VariantBuilder(4, 4, "A", "T").quality(PASS_QUALITY).variantEffect(PASS_VARIANT_EFFECT).build(); + passesAllFilters = VariantEvaluation.builder(1, 1, "A", "T") + .quality(PASS_QUALITY) + .variantEffect(PASS_VARIANT_EFFECT) + .build(); + failsAllFilters = VariantEvaluation.builder(2, 2, "A", "T") + .quality(FAIL_QUALITY) + .variantEffect(FAIL_VARIANT_EFFECT) + .build(); + passesQualityFrequencyFilter = VariantEvaluation.builder(3, 3, "A", "T") + .quality(PASS_QUALITY) + .variantEffect(FAIL_VARIANT_EFFECT) + .build(); + passesTargetQualityFilter = VariantEvaluation.builder(4, 4, "A", "T") + .quality(PASS_QUALITY) + .variantEffect(PASS_VARIANT_EFFECT) + .build(); variantEvaluations = Arrays.asList(passesAllFilters, failsAllFilters, @@ -79,8 +107,8 @@ public void setUp() { } private Map mockFrequencyData() { - FrequencyData passFrequency = new FrequencyData(new RsId(12345), new Frequency(0.01f, FrequencySource.UNKNOWN)); - FrequencyData failFrequency = new FrequencyData(new RsId(54321), new Frequency(100f, FrequencySource.UNKNOWN)); + FrequencyData passFrequency = FrequencyData.of(RsId.valueOf(12345), Frequency.valueOf(0.01f, FrequencySource.UNKNOWN)); + FrequencyData failFrequency = FrequencyData.of(RsId.valueOf(54321), Frequency.valueOf(100f, FrequencySource.UNKNOWN)); Map frequecyData = new HashMap<>(); frequecyData.put(passesAllFilters, passFrequency); diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SparseVariantFilterRunnerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SparseVariantFilterRunnerTest.java similarity index 85% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SparseVariantFilterRunnerTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SparseVariantFilterRunnerTest.java index 4ff12f77e..25b223d91 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/filters/SparseVariantFilterRunnerTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/SparseVariantFilterRunnerTest.java @@ -1,32 +1,48 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.filters; +package org.monarchinitiative.exomiser.core.filters; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.InjectMocks; +import org.mockito.Mock; +import org.mockito.Mockito; +import org.mockito.runners.MockitoJUnitRunner; +import org.monarchinitiative.exomiser.core.genome.VariantDataService; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; import java.util.ArrayList; import java.util.Collections; import java.util.List; -import java.util.stream.Collectors; import static java.util.stream.Collectors.toList; import static org.hamcrest.CoreMatchers.equalTo; import static org.hamcrest.CoreMatchers.is; - -import org.junit.Before; -import org.junit.Test; - -import static org.junit.Assert.*; - -import org.junit.runner.RunWith; -import org.mockito.InjectMocks; -import org.mockito.Mock; -import org.mockito.Mockito; -import org.mockito.runners.MockitoJUnitRunner; +import static org.junit.Assert.assertThat; /** * @author Jules Jacobsen @@ -59,10 +75,10 @@ public class SparseVariantFilterRunnerTest { @Before public void setUp() { - passesAllFilters = new VariantEvaluation.VariantBuilder(1, 1, "A", "T").build(); - failsAllFilters = new VariantEvaluation.VariantBuilder(2, 2, "A", "T").build(); - passesQualityFrequencyFilter = new VariantEvaluation.VariantBuilder(3, 3, "A", "T").build(); - passesTargetQualityFilter = new VariantEvaluation.VariantBuilder(4, 4, "A", "T").build(); + passesAllFilters = VariantEvaluation.builder(1, 1, "A", "T").build(); + failsAllFilters = VariantEvaluation.builder(2, 2, "A", "T").build(); + passesQualityFrequencyFilter = VariantEvaluation.builder(3, 3, "A", "T").build(); + passesTargetQualityFilter = VariantEvaluation.builder(4, 4, "A", "T").build(); makeVariantEvaluations(); diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/StubPassAllVariantFilter.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/StubPassAllVariantFilter.java new file mode 100644 index 000000000..8b4d279c5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/StubPassAllVariantFilter.java @@ -0,0 +1,80 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.Objects; + +/** + * Stub class passes all VariantEvaluations through a Filter of the declared + * FilterType. + * + * @author Jules Jacobsen + */ +public class StubPassAllVariantFilter implements VariantFilter { + + private final FilterType mockFilterType; + + public StubPassAllVariantFilter(FilterType mockFilterType) { + this.mockFilterType = mockFilterType; + } + + @Override + public FilterResult runFilter(VariantEvaluation variantEvaluation) { + return new PassFilterResult(mockFilterType); + } + + @Override + public FilterType getFilterType() { + return mockFilterType; + } + + @Override + public int hashCode() { + int hash = 7; + hash = 89 * hash + Objects.hashCode(this.mockFilterType); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final StubPassAllVariantFilter other = (StubPassAllVariantFilter) obj; + return this.mockFilterType == other.mockFilterType; + } + + @Override + public String toString() { + return "StubVariantFilter{" + "mockFilterType=" + mockFilterType + '}'; + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/VariantEffectFilterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/VariantEffectFilterTest.java new file mode 100644 index 000000000..022a5cb35 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/filters/VariantEffectFilterTest.java @@ -0,0 +1,113 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.filters; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.util.EnumSet; +import java.util.Set; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class VariantEffectFilterTest { + + private VariantEffectFilter instance; + private Set offTargetVariantEffects; + + private VariantEvaluation missensePassesFilter; + private VariantEvaluation synonymousFailsFilter; + + @Before + public void setUp() { + offTargetVariantEffects = EnumSet.of(VariantEffect.SYNONYMOUS_VARIANT); + + instance = new VariantEffectFilter(offTargetVariantEffects); + + missensePassesFilter = testVariantBuilder().variantEffect(VariantEffect.MISSENSE_VARIANT).build(); + synonymousFailsFilter = testVariantBuilder().variantEffect(VariantEffect.SYNONYMOUS_VARIANT).build(); + } + + private VariantEvaluation.Builder testVariantBuilder() { + return VariantEvaluation.builder(1, 1, "A", "T"); + } + + @Test + public void testGetOffTargetTypes() { + assertThat(instance.getOffTargetVariantTypes(), equalTo(offTargetVariantEffects)); + } + + @Test + public void testGetFilterType() { + assertThat(instance.getFilterType(), equalTo(FilterType.VARIANT_EFFECT_FILTER)); + } + + @Test + public void testMissenseVariantPassesFilter() { + FilterResult filterResult = instance.runFilter(missensePassesFilter); + + FilterTestHelper.assertPassed(filterResult); + } + + @Test + public void testSynonymousVariantFailsFilter() { + FilterResult filterResult = instance.runFilter(synonymousFailsFilter); + + FilterTestHelper.assertFailed(filterResult); + } + + @Test + public void testNotEqualNull() { + Object obj = null; + assertThat(instance.equals(obj), is(false)); + } + + @Test + public void testNotEqualOtherFilter() { + PathogenicityFilter obj = new PathogenicityFilter(true); + assertThat(instance.equals(obj), is(false)); + } + + @Test + public void testEqualOtherTagetFilter() { + VariantEffectFilter obj = new VariantEffectFilter(offTargetVariantEffects); + assertThat(instance.equals(obj), is(true)); + } + + @Test + public void testHashCode() { + VariantEffectFilter anotherTargetFilter = new VariantEffectFilter(offTargetVariantEffects); + assertThat(instance.hashCode(), equalTo(anotherTargetFilter.hashCode())); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/GeneFactoryTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/GeneFactoryTest.java new file mode 100644 index 000000000..6879e9ee9 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/GeneFactoryTest.java @@ -0,0 +1,63 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome; + +import com.google.common.collect.Sets; +import de.charite.compbio.jannovar.data.JannovarData; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; + +import java.util.Set; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class GeneFactoryTest { + + private static final JannovarData DEFAULT_JANNOVAR_DATA = TestFactory.buildDefaultJannovarData(); + + private GeneFactory instance = new GeneFactory(DEFAULT_JANNOVAR_DATA); + + @Test + public void testCreateKnownGeneIds() { + Set expected = Sets.newHashSet(TestFactory.buildGeneIdentifiers()); + Set knownGeneIds = instance.createKnownGeneIds(); + assertThat(knownGeneIds, equalTo(expected)); + } + + @Test + public void testCreateKnownGenes() { + Set expected = Sets.newHashSet(TestGeneFactory.buildGenes()); + Set knownGenes = Sets.newHashSet(instance.createKnownGenes()); + assertThat(knownGenes, equalTo(expected)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/GeneTranscriptModelBuilder.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/GeneTranscriptModelBuilder.java new file mode 100644 index 000000000..8ab151c82 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/GeneTranscriptModelBuilder.java @@ -0,0 +1,103 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.data.ReferenceDictionary; +import de.charite.compbio.jannovar.reference.*; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Map; + +/** + * @author Jules Jacobsen + */ +public class GeneTranscriptModelBuilder { + + private static final Logger logger = LoggerFactory.getLogger(GeneTranscriptModelBuilder.class); + + private static final ReferenceDictionary REF_DICT = HG19RefDictBuilder.build(); + + private final TranscriptModelBuilder builder; + private final int chr; + + public GeneTranscriptModelBuilder(String geneSymbol, String geneId, String accession, int chr, Strand strand, String mRnaTranscriptSequence) { + builder = new TranscriptModelBuilder(); + builder.setGeneSymbol(geneSymbol); + builder.setGeneID(geneId); + builder.setStrand(strand); + builder.setAccession(accession); + builder.setSequence(mRnaTranscriptSequence.toUpperCase()); + + this.chr = chr; + } + + public GeneTranscriptModelBuilder buildTxRegion(int start, int end) { + GenomeInterval tx = getZeroBasedFwdStrandInterval(chr, start, end); + builder.setTXRegion(tx); + return this; + } + + public GeneTranscriptModelBuilder buildCdsRegion(int start, int end) { + GenomeInterval cds = getZeroBasedFwdStrandInterval(chr, start, end); + builder.setCDSRegion(cds); + return this; + } + + public GeneTranscriptModelBuilder addExon(int start, int end) { + GenomeInterval exonRegion = getZeroBasedFwdStrandInterval(chr, start, end); + builder.addExonRegion(exonRegion); + return this; + } + + public GeneTranscriptModelBuilder addAltGeneIds(Map altGeneIds) { + builder.getAltGeneIDs().putAll(altGeneIds); + return this; + } + + private GenomeInterval getZeroBasedFwdStrandInterval(int chr, int start, int end) { + return new GenomeInterval(REF_DICT, Strand.FWD, chr, start, end, PositionType.ZERO_BASED); + } + + public TranscriptModel build() { + if (builder.getTXRegion() == null) { + buildTxRegion(1, 1); + } + + if (builder.getCDSRegion() == null) { + buildCdsRegion(1, 1); + } + + if (builder.getExonRegions().isEmpty()) { + addExon(1, 1); + } + final int txStart = builder.getTXRegion().getBeginPos(); + final int txEnd = builder.getTXRegion().getEndPos(); + final int cdsStart = builder.getCDSRegion().getBeginPos(); + final int cdsEnd = builder.getCDSRegion().getEndPos(); + logger.info("Built TranscriptModel Gene={} accession={} Chr{} Strand={} seqLen={} txRegion={}-{}({} bases) CDS={}-{}({} bases) {} exons={}", builder.getGeneSymbol(), builder.getAccession(), builder.getCDSRegion().getChr(), + builder.getStrand(), builder.getSequence().length(), txStart, txEnd, txEnd - txStart, + cdsStart, cdsEnd, cdsEnd - cdsStart, + builder.getExonRegions().size(), builder.getExonRegions().stream().map(exon -> String.format("[%d-%d] ", exon.getBeginPos(), exon.getEndPos())).reduce("", (a, b) -> a + b)); + + return builder.build(); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/JannovarVariantAnnotatorTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/JannovarVariantAnnotatorTest.java new file mode 100644 index 000000000..c4bdba7c8 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/JannovarVariantAnnotatorTest.java @@ -0,0 +1,208 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.annotation.VariantAnnotations; +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.AllelePosition; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class JannovarVariantAnnotatorTest { + + private JannovarVariantAnnotator instance = new JannovarVariantAnnotator(TestFactory.buildDefaultJannovarData()); + + @Test + public void testGetAnnotationsForUnknownContigVariant() { + VariantAnnotations annotations = instance.getVariantAnnotations("UNKNOWN", 1, "A", "T"); + System.out.println(annotations); + assertThat(annotations, not(nullValue())); + assertThat(annotations.hasAnnotation(), is(false)); + assertThat(annotations.getChr(), equalTo(0)); + assertThat(annotations.getPos(), equalTo(0)); //Jannovar uses and returns 0-based coordinates. + assertThat(annotations.getRef(), equalTo("A")); + assertThat(annotations.getAlt(), equalTo("T")); + } + + @Test + public void testGetAnnotationsForKnownContigVariant() { + VariantAnnotations annotations = instance.getVariantAnnotations("chr1", 1, "A", "T"); + System.out.println(annotations); + assertThat(annotations.hasAnnotation(), is(true)); + assertThat(annotations.getChr(), equalTo(1)); + assertThat(annotations.getPos(), equalTo(0)); //Jannovar uses and returns 0-based coordinates. + assertThat(annotations.getRef(), equalTo("A")); + assertThat(annotations.getAlt(), equalTo("T")); + } + + @Test + public void testGetAnnotationsForKnownExonicVariant() { + int pos = 123256215; + String ref = "T"; + String alt = "G"; + + VariantAnnotations annotations = instance.getVariantAnnotations("10", pos, ref, alt); + + System.out.println(annotations); + + assertThat(annotations.hasAnnotation(), is(true)); + assertThat(annotations.getChr(), equalTo(10)); + assertThat(annotations.getPos(), equalTo(pos - 1)); //Jannovar uses and returns 0-based coordinates. + assertThat(annotations.getRef(), equalTo(ref)); + assertThat(annotations.getAlt(), equalTo(alt)); + assertThat(annotations.getHighestImpactEffect(), equalTo(VariantEffect.MISSENSE_VARIANT)); + } + + @Test + public void testGetAnnotationsForUnTrimmedInsertionJannovarShiftsRight() { + int pos = 118608471; + String ref = "GT"; + String alt = "GTT"; + + VariantAnnotations annotations = instance.getVariantAnnotations("X", pos, ref, alt); + + System.out.println(annotations); + + AllelePosition allelePosition = AllelePosition.trim(pos, ref, alt); + + System.out.printf("AnnotationList{pos=%d, ref='%s', alt='%s'}%n", annotations.getPos(), annotations.getRef(), annotations + .getAlt()); + System.out.println(allelePosition); + + assertThat(annotations.hasAnnotation(), is(false)); + assertThat(annotations.getChr(), equalTo(23)); + assertThat(annotations.getPos(), equalTo(118608471 + 1)); //Jannovar trims from the left first i.e. right-shifts. + assertThat(annotations.getRef(), equalTo("")); + assertThat(annotations.getAlt(), equalTo("T")); + } + + @Test + public void testGetAnnotationsForUnTrimmedInsertionTrimmedWithAllelePosition() { + int pos = 118608470; + String ref = "AGT"; + String alt = "AGTT"; + + AllelePosition allelePosition = AllelePosition.trim(pos, ref, alt); + VariantAnnotations annotations = instance.getVariantAnnotations("X", allelePosition); + System.out.println(annotations); + + System.out.printf("AnnotationList{pos=%d, ref='%s', alt='%s'}%n", annotations.getPos(), annotations.getRef(), annotations + .getAlt()); + System.out.println(allelePosition); + + assertThat(annotations.hasAnnotation(), is(false)); + assertThat(annotations.getChr(), equalTo(23)); + assertThat(annotations.getPos(), equalTo(allelePosition.getPos())); + assertThat(annotations.getRef(), equalTo("")); + assertThat(annotations.getAlt(), equalTo("T")); + } + + @Test + public void testGetAnnotationsForUnTrimmedDeletionJannovarShiftsRight() { + int pos = 118608470; + String ref = "AGTT"; + String alt = "AGT"; + + VariantAnnotations annotations = instance.getVariantAnnotations("X", pos, ref, alt); + + System.out.println(annotations); + + AllelePosition allelePosition = AllelePosition.trim(pos, ref, alt); + + System.out.printf("AnnotationList{pos=%d, ref='%s', alt='%s'}%n", annotations.getPos(), annotations.getRef(), annotations + .getAlt()); + System.out.println(allelePosition); + + assertThat(annotations.hasAnnotation(), is(false)); + assertThat(annotations.getChr(), equalTo(23)); + assertThat(annotations.getPos(), equalTo(118608471 + 1)); //Jannovar trims from the left first i.e. right-shifts. + assertThat(annotations.getRef(), equalTo("T")); + assertThat(annotations.getAlt(), equalTo("")); + } + + @Test + public void testGetAnnotationsForUnTrimmedDeletionTrimmedWithAllelePosition() { + + //Given a single allele from a multi-positional site, they might not be fully trimmed. In cases where there is repetition, depending on the program used, the final + // variant allele will be different. +// VCF: X-118887583-TCAAAA-TCAAAACAAAA +// Exomiser: X-118887583-T -TCAAAA +// CellBase: X-118887584-- - CAAAA +// Jannovar: X-118887588- - CAAAA +// Nirvana: X-118887589- - CAAAA + + //trimming first with Exomiser, then annotating with Jannovar, constrains the Jannovar annotation to the same position as Exomiser. +// VCF: X-118887583-TCAAAA-TCAAAACAAAA +// Exomiser: X-118887583-T -TCAAAA +// CellBase: X-118887584-- - CAAAA +// Jannovar: X-118887583- - CAAAA (Jannovar is zero-based) +// Nirvana: X-118887584- - CAAAA + +// Cellbase: +// https://github.com/opencb/biodata/blob/develop/biodata-tools/src/main/java/org/opencb/biodata/tools/variant/VariantNormalizer.java +// http://bioinfo.hpc.cam.ac.uk/cellbase/webservices/rest/v4/hsapiens/genomic/variant/X:118887583:TCAAAA:TCAAAACAAAA/annotation?assembly=grch37&limit=-1&skip=-1&count=false&Output format=json&normalize=true + +// Nirvana style trimming: +// https://github.com/Illumina/Nirvana/blob/master/VariantAnnotation/Algorithms/BiDirectionalTrimmer.cs + +// Jannovar: +// https://github.com/charite/jannovar/blob/master/jannovar-core/src/main/java/de/charite/compbio/jannovar/reference/VariantDataCorrector.java + + int pos = 118608470; + String ref = "AGTT"; + String alt = "AGT"; + + AllelePosition exomiserTrimmedAllelePosition = AllelePosition.trim(pos, ref, alt); + + VariantAnnotations exomiserTrimmedAnnotations = instance.getVariantAnnotations("X", exomiserTrimmedAllelePosition); + System.out.println(exomiserTrimmedAnnotations); + System.out.printf("AnnotationList{pos=%d, ref='%s', alt='%s'}%n", exomiserTrimmedAnnotations.getPos(), exomiserTrimmedAnnotations + .getRef(), exomiserTrimmedAnnotations.getAlt()); + System.out.println("Trimmed: " + exomiserTrimmedAllelePosition); + + assertThat(exomiserTrimmedAnnotations.hasAnnotation(), is(false)); + assertThat(exomiserTrimmedAnnotations.getChr(), equalTo(23)); + assertThat(exomiserTrimmedAnnotations.getPos(), equalTo(118608471)); + assertThat(exomiserTrimmedAnnotations.getRef(), equalTo("T")); + assertThat(exomiserTrimmedAnnotations.getAlt(), equalTo("")); + + + AllelePosition unTrimmedAllelePosition = AllelePosition.of(pos, ref, alt); + + VariantAnnotations jannovarTrimmedAnnotations = instance.getVariantAnnotations("X", unTrimmedAllelePosition); + System.out.println(jannovarTrimmedAnnotations); + System.out.printf("AnnotationList{pos=%d, ref='%s', alt='%s'}%n", jannovarTrimmedAnnotations.getPos(), jannovarTrimmedAnnotations + .getRef(), jannovarTrimmedAnnotations.getAlt()); + System.out.println("Untrimmed: " + unTrimmedAllelePosition); + + assertThat(jannovarTrimmedAnnotations.hasAnnotation(), is(false)); + assertThat(jannovarTrimmedAnnotations.getChr(), equalTo(23)); + assertThat(jannovarTrimmedAnnotations.getPos(), equalTo(exomiserTrimmedAnnotations.getPos() + 1)); + assertThat(jannovarTrimmedAnnotations.getRef(), equalTo("T")); + assertThat(jannovarTrimmedAnnotations.getAlt(), equalTo("")); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestFactory.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestFactory.java new file mode 100644 index 000000000..901cb79de --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestFactory.java @@ -0,0 +1,116 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import com.google.common.collect.ImmutableList; +import de.charite.compbio.jannovar.data.JannovarData; +import de.charite.compbio.jannovar.data.ReferenceDictionary; +import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import de.charite.compbio.jannovar.reference.TranscriptModel; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; + +import java.util.List; + +/** + * Allows the easy creation of {@link JannovarData} {@link VariantFactory} and {@link VariantAnnotationData} objects for testing. + * + * The default data contains one transcript each for the genes FGFR2, GNRHR2A, RBM8A (overlaps with GNRHR2A), and SHH based on the HG19/GRCh37 build. + * + * @author Jules Jacobsen + */ +public class TestFactory { + + private static final ReferenceDictionary DEFAULT_REF_DICT = HG19RefDictBuilder.build(); + + private static final TranscriptModel tmFGFR2 = TestTranscriptModelFactory.buildTMForFGFR2(); + private static final TranscriptModel tmGNRHR2A = TestTranscriptModelFactory.buildTMForGNRHR2A(); + private static final TranscriptModel tmRBM8A = TestTranscriptModelFactory.buildTMForRBM8A(); + private static final TranscriptModel tmSHH = TestTranscriptModelFactory.buildTMForSHH(); + + private static final JannovarData DEFAULT_JANNOVAR_DATA = new JannovarData(DEFAULT_REF_DICT, ImmutableList.of(tmFGFR2, tmGNRHR2A, tmRBM8A, tmSHH)); + private static final GeneFactory DEFAULT_GENE_FACTORY = new GeneFactory(DEFAULT_JANNOVAR_DATA); + private static final VariantFactory DEFAULT_VARIANT_FACTORY = new VariantFactory(DEFAULT_JANNOVAR_DATA); + private static final VariantAnnotationData DEFAULT_VARIANT_ANNOTATION_DATA = new VariantAnnotationData(DEFAULT_JANNOVAR_DATA); + + private TestFactory() { + //this class should be used in a static context. + } + + public static ReferenceDictionary getDefaultRefDict() { + return DEFAULT_REF_DICT; + } + + public static JannovarData buildDefaultJannovarData() { + return DEFAULT_JANNOVAR_DATA; + } + + public static VariantFactory buildDefaultVariantFactory() { + return DEFAULT_VARIANT_FACTORY; + } + + public static VariantAnnotationData buildDefaultVariantAnnotationData() { + return DEFAULT_VARIANT_ANNOTATION_DATA; + } + + public static JannovarData buildJannovarData(TranscriptModel... transcriptModels) { + return new JannovarData(DEFAULT_REF_DICT, ImmutableList.copyOf(transcriptModels)); + } + + public static VariantFactory buildVariantFactory(TranscriptModel... transcriptModels) { + final JannovarData jannovarData = buildJannovarData(transcriptModels); + return new VariantFactory(jannovarData); + } + + public static VariantFactory buildVariantFactory(JannovarData jannovarData) { + return new VariantFactory(jannovarData); + } + + public static VariantAnnotationData buildVariantAnnotationData(TranscriptModel... transcriptModels) { + final JannovarData jannovarData = buildJannovarData(transcriptModels); + return buildVariantAnnotationData(jannovarData); + } + + public static VariantAnnotationData buildVariantAnnotationData(JannovarData jannovarData) { + return new VariantAnnotationData(jannovarData); + } + + public static GeneFactory buildDefaultGeneFactory() { + return DEFAULT_GENE_FACTORY; + } + + public static List buildGeneIdentifiers() { + return TestGeneFactory.buildGeneIdentifiers(); + } + + public static List buildGenes() { + return TestGeneFactory.buildGenes(); + } + + public static Gene newGeneFGFR2() { return new Gene(TestGeneFactory.FGFR2_IDENTIFIER);} + + public static Gene newGeneGNRHR2() { return new Gene(TestGeneFactory.GNRHR2_IDENTIFIER);} + + public static Gene newGeneRBM8A() { return new Gene(TestGeneFactory.RBM8A_IDENTIFIER);} + + public static Gene newGeneSHH() { return new Gene(TestGeneFactory.SHH_IDENTIFIER);} + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestGeneFactory.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestGeneFactory.java new file mode 100644 index 000000000..6a078ee48 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestGeneFactory.java @@ -0,0 +1,98 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import com.google.common.collect.ImmutableList; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; + +import java.util.Arrays; +import java.util.List; + +/** + * Static class for providing test GeneIdentifiers and Gene instances. + * + * @author Jules Jacobsen + */ +class TestGeneFactory { + + public static final GeneIdentifier FGFR2_IDENTIFIER = GeneIdentifier.builder() + .geneId("2263") + .geneSymbol("FGFR2") + .hgncId("HGNC:3689") + .hgncSymbol("FGFR2") + .entrezId("2263") + .ensemblId("ENSG00000066468") + .ucscId("uc057wle.1") + .build(); + + public static final GeneIdentifier SHH_IDENTIFIER = GeneIdentifier.builder() + .geneId("6469") + .geneSymbol("SHH") + .hgncId("HGNC:10848") + .hgncSymbol("SHH") + .entrezId("6469") + .ensemblId("ENSG00000164690") + .ucscId("uc003wmk.2") + .build(); + + public static final GeneIdentifier GNRHR2_IDENTIFIER = GeneIdentifier.builder() + .geneId("114814") + .geneSymbol("GNRHR2") + .hgncId("HGNC:16341") + .hgncSymbol("GNRHR2") + .entrezId("114814") + .ensemblId("ENSG00000211451") + .ucscId("") + .build(); + + public static final GeneIdentifier RBM8A_IDENTIFIER = GeneIdentifier.builder() + .geneId("9939") + .geneSymbol("RBM8A") + .hgncId("HGNC:9905") + .hgncSymbol("RBM8A") + .entrezId("9939") + .ensemblId("ENSG00000265241") + .ucscId("uc031uto.3") + .build(); + + private static final List GENE_IDENTIFIERS = ImmutableList.of(FGFR2_IDENTIFIER, SHH_IDENTIFIER, GNRHR2_IDENTIFIER, RBM8A_IDENTIFIER); + + private TestGeneFactory() {} + + /** + * Creates a list of GeneIdentifiers for the following genes: FGFR2, SHH, RBM8A and GNRHR2. + * + * @return an immutable list of GeneIdentifiers. + */ + static List buildGeneIdentifiers() { + return GENE_IDENTIFIERS; + } + + /** + * Creates a list of the following Genes: FGFR2, SHH, RBM8A and GNRHR2. + * + * @return a mutable list of newly instantiated Gene instances build from fully formed GeneIdentifiers. + */ + static List buildGenes() { + return Arrays.asList(new Gene(FGFR2_IDENTIFIER), new Gene(SHH_IDENTIFIER), new Gene(GNRHR2_IDENTIFIER), new Gene(RBM8A_IDENTIFIER)); + } +} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestTranscriptModelFactory.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestTranscriptModelFactory.java similarity index 86% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestTranscriptModelFactory.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestTranscriptModelFactory.java index 1caec4cfb..9ade5d489 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/factories/TestTranscriptModelFactory.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestTranscriptModelFactory.java @@ -1,35 +1,40 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2015 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.core.factories; +package org.monarchinitiative.exomiser.core.genome; import de.charite.compbio.jannovar.data.ReferenceDictionary; +import de.charite.compbio.jannovar.hgnc.AltGeneIDType; import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; import de.charite.compbio.jannovar.reference.Strand; - -import static de.charite.compbio.jannovar.reference.Strand.FWD; -import static de.charite.compbio.jannovar.reference.Strand.REV; - import de.charite.compbio.jannovar.reference.TranscriptModel; +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; import org.slf4j.Logger; import org.slf4j.LoggerFactory; +import java.util.HashMap; +import java.util.Map; + +import static de.charite.compbio.jannovar.reference.Strand.FWD; +import static de.charite.compbio.jannovar.reference.Strand.REV; + /** * Allows the easy creation of transcript models from the UCSC knownGenes.txt.gz lines. * The sequences are the output of the 5'UTR Exons, CDS Exons and 3'UTR Exons from UCSC @@ -50,7 +55,7 @@ public static TranscriptModel buildTMForFGFR2() { final String KG_LINE_FGFR2 = "uc021pzz.1\tchr10\t-\t123237843\t123357972\t123239370\t123353331\t18\t123237843,123243211,123244908,123246867,123247504,123256045,123258008,123260339,123263303,123274630,123276832,123279492,123298105,123310803,123324015,123324951,123353222,123357475,\t123239535,123243317,123245046,123246938,123247627,123256236,123258119,123260461,123263455,123274833,123276977,123279683,123298229,123310973,123324093,123325218,123353481,123357972,\tP21802\tuc021pzz.1"; final String TRANSCRIPT_SEQ_FGFR2 = "ggcggcggctggaggagagcgcggtggagagccgagcgggcgggcggcgggtgcggagcgggcgagggagcgcgcgcggccgccacaaagctcgggcgccgcggggctgcatgcggcgtacctggcccggcgcggcgactgctctccgggctggcgggggccggccgcgagccccgggggccccgaggccgcagcttgcctgcgcgctctgagccttcgcaactcgcgagcaaagtttggtggaggcaacgccaagcctgagtcctttcttcctctcgttccccaaatccgagggcagcccgcgggcgtcatgcccgcgctcctccgcagcctggggtacgcgtgaagcccgggaggcttggcgccggcgaagacccaaggaccactcttctgcgtttggagttgctccccgcaaccccgggctcgtcgctttctccatcccgacccacgcggggcgcggggacaacacaggtcgcggaggagcgttgccattcaagtgactgcagcagcagcggcagcgcctcggttcctgagcccaccgcaggctgaaggcattgcgcgtagtccatgcccgtagaggaagtgtgcagatgggattaacgtccacatggagatatggaagaggaccggggattggtaccgtaaccatggtcagctggggtcgtttcatctgcctggtcgtggtcaccatggcaaccttgtccctggcccggccctccttcagtttagttgaggataccacattagagccagaagagccaccaaccaaataccaaatctctcaaccagaagtgtacgtggctgcgccaggggagtcgctagaggtgcgctgcctgttgaaagatgccgccgtgatcagttggactaaggatggggtgcacttggggcccaacaataggacagtgcttattggggagtacttgcagataaagggcgccacgcctagagactccggcctctatgcttgtactgccagtaggactgtagacagtgaaacttggtacttcatggtgaatgtcacagatgccatctcatccggagatgatgaggatgacaccgatggtgcggaagattttgtcagtgagaacagtaacaacaagagagcaccatactggaccaacacagaaaagatggaaaagcggctccatgctgtgcctgcggccaacactgtcaagtttcgctgcccagccggggggaacccaatgccaaccatgcggtggctgaaaaacgggaaggagtttaagcaggagcatcgcattggaggctacaaggtacgaaaccagcactggagcctcattatggaaagtgtggtcccatctgacaagggaaattatacctgtgtagtggagaatgaatacgggtccatcaatcacacgtaccacctggatgttgtggagcgatcgcctcaccggcccatcctccaagccggactgccggcaaatgcctccacagtggtcggaggagacgtagagtttgtctgcaaggtttacagtgatgcccagccccacatccagtggatcaagcacgtggaaaagaacggcagtaaatacgggcccgacgggctgccctacctcaaggttctcaaggccgccggtgttaacaccacggacaaagagattgaggttctctatattcggaatgtaacttttgaggacgctggggaatatacgtgcttggcgggtaattctattgggatatcctttcactctgcatggttgacagttctgccagcgcctggaagagaaaaggagattacagcttccccagactacctggagatagccatttactgcataggggtcttcttaatcgcctgtatggtggtaacagtcatcctgtgccgaatgaagaacacgaccaagaagccagacttcagcagccagccggctgtgcacaagctgaccaaacgtatccccctgcggagacaggtaacagtttcggctgagtccagctcctccatgaactccaacaccccgctggtgaggataacaacacgcctctcttcaacggcagacacccccatgctggcaggggtctccgagtatgaacttccagaggacccaaaatgggagtttccaagagataagctgacactgggcaagcccctgggagaaggttgctttgggcaagtggtcatggcggaagcagtgggaattgacaaagacaagcccaaggaggcggtcaccgtggccgtgaagatgttgaaagatgatgccacagagaaagacctttctgatctggtgtcagagatggagatgatgaagatgattgggaaacacaagaatatcataaatcttcttggagcctgcacacaggatgggcctctctatgtcatagttgagtatgcctctaaaggcaacctccgagaatacctccgagcccggaggccacccgggatggagtactcctatgacattaaccgtgttcctgaggagcagatgaccttcaaggacttggtgtcatgcacctaccagctggccagaggcatggagtacttggcttcccaaaaatgtattcatcgagatttagcagccagaaatgttttggtaacagaaaacaatgtgatgaaaatagcagactttggactcgccagagatatcaacaatatagactattacaaaaagaccaccaatgggcggcttccagtcaagtggatggctccagaagccctgtttgatagagtatacactcatcagagtgatgtctggtccttcggggtgttaatgtgggagatcttcactttagggggctcgccctacccagggattcccgtggaggaactttttaagctgctgaaggaaggacacagaatggataagccagccaactgcaccaacgaactgtacatgatgatgagggactgttggcatgcagtgccctcccagagaccaacgttcaagcagttggtagaagacttggatcgaattctcactctcacaaccaatgaggaatacttggacctcagccaacctctcgaacagtattcacctagttaccctgacacaagaagttcttgttcttcaggagatgattctgttttttctccagaccccatgccttacgaaccatgccttcctcagtatccacacataaacggcagtgttaaaacatgaatgactgtgtctgcctgtccccaaacaggacagcactgggaacctagctacactgagcagggagaccatgcctcccagagcttgttgtctccacttgtatatatggatcagaggagtaaataattggaaaagtaatcagcatatgtgtaaagatttatacagttgaaaacttgtaatcttccccaggaggagaagaaggtttctggagcagtggactgccacaagccaccatgtaacccctctcacctgccgtgcgtactggctgtggaccagtaggactcaaggtggacgtgcgttctgccttccttgttaattttgtaataattggagaagatttatgtcagcacacacttacagagcacaaatgcagtatataggtgctggatgtatgtaaatatattcaaattatgtataaatatatattatatatttacaaggagttattttttgtattgattttaaatggatgtcccaatgcacctagaaaattggtctctctttttttaatagctatttgctaaatgctgttcttacacataatttcttaattttcaccgagcagaggtggaaaaatacttttgctttcagggaaaatggtataacgttaatttattaataaattggtaatatacaaaacaattaatcatttatagttttttttgtaatttaagtggcatttctatgcaggcagcacagcagactagttaatctattgcttggacttaactagttatcagatcctttgaaaagagaatatttacaatatatgactaatttggggaaaatgaagttttgatttatttgtgtttaaatgctgctgtcagacgattgttcttagacctcctaaatgccccatattaaaagaactcattcataggaaggtgtttcattttggtgtgcaaccctgtcattacgtcaacgcaacgtctaactggacttcccaagataaatggtaccagcgtcctcttaaaagatgccttaatccattccttgaggacagaccttagttgaaatgatagcagaatgtgcttctctctggcagctggccttctgcttctgagttgcacattaatcagattagcctgtattctcttcagtgaattttgataatggcttccagactctttggcgttggagacgcctgttaggatcttcaagtcccatcatagaaaattgaaacacagagttgttctgctgatagttttggggatacgtccatctttttaagggattgctttcatctaattctggcaggacctcaccaaaagatccagcctcatacctacatcagacaaaatatcgccgttgttccttctgtactaaagtattgtgttttgctttggaaacacccactcactttgcaatagccgtgcaagatgaatgcagattacactgatcttatgtgttacaaaattggagaaagtatttaataaaacctgttaatttttatactgacaataaaaatgtttctacagatattaatgttaacaagacaaaataaatgtcacgcaacttatttttttaataaaaaaaaaaaaaaa"; - return buildTranscriptModelFromUcscKnownGene("FGFR2", "ENTREZ2263", KG_LINE_FGFR2, TRANSCRIPT_SEQ_FGFR2); + return buildTranscriptModelFromUcscKnownGene(TestGeneFactory.FGFR2_IDENTIFIER, KG_LINE_FGFR2, TRANSCRIPT_SEQ_FGFR2); } /** @@ -60,7 +65,7 @@ public static TranscriptModel buildTMForSHH() { final String KG_LINE_SHH2 = "uc003wmk.1\tchr7\t-\t155595557\t155604967\t155595593\t155604816\t3\t155595557,155598989,155604516,\t155596420,155599251,155604967,\tQ15465\tuc003wmk.1"; final String TRANSCRIPT_SEQ_SHH2 = "gcgaggcagccagcgagggagagagcgagcgggcgagccggagcgaggaagggaaagcgcaagagagagcgcacacgcacacacccgccgcgcgcactcgcgcacggacccgcacggggacagctcggaagtcatcagttccatgggcgagatgctgctgctggcgagatgtctgctgctagtcctcgtctcctcgctgctggtatgctcgggactggcgtgcggaccgggcagggggttcgggaagaggaggcaccccaaaaagctgacccctttagcctacaagcagtttatccccaatgtggccgagaagaccctaggcgccagcggaaggtatgaagggaagatctccagaaactccgagcgatttaaggaactcacccccaattacaaccccgacatcatatttaaggatgaagaaaacaccggagcggacaggctgatgactcagaggtgtaaggacaagttgaacgctttggccatctcggtgatgaaccagtggccaggagtgaaactgcgggtgaccgagggctgggacgaagatggccaccactcagaggagtctctgcactacgagggccgcgcagtggacatcaccacgtctgaccgcgaccgcagcaagtacggcatgctggcccgcctggcggtggaggccggcttcgactgggtgtactacgagtccaaggcacatatccactgctcggtgaaagcagagaactcggtggcggccaaatcgggaggctgcttcccgggctcggccacggtgcacctggagcagggcggcaccaagctggtgaaggacctgagccccggggaccgcgtgctggcggcggacgaccagggccggctgctctacagcgacttcctcactttcctggaccgcgacgacggcgccaagaaggtcttctacgtgatcgagacgcgggagccgcgcgagcgcctgctgctcaccgccgcgcacctgctctttgtggcgccgcacaacgactcggccaccggggagcccgaggcgtcctcgggctcggggccgccttccgggggcgcactggggcctcgggcgctgttcgccagccgcgtgcgcccgggccagcgcgtgtacgtggtggccgagcgtgacggggaccgccggctcctgcccgccgctgtgcacagcgtgaccctaagcgaggaggccgcgggcgcctacgcgccgctcacggcccagggcaccattctcatcaaccgggtgctggcctcgtgctacgcggtcatcgaggagcacagctgggcgcaccgggccttcgcgcccttccgcctggcgcacgcgctcctggctgcactggcgcccgcgcgcacggaccgcggcggggacagcggcggcggggaccgcgggggcggcggcggcagagtagccctaaccgctccaggtgctgccgacgctccgggtgcgggggccaccgcgggcatccactggtactcgcagctgctctaccaaataggcacctggctcctggacagcgaggccctgcacccgctgggcatggcggtcaagtccagctgaagccggggggccgggggaggggcgcgggagggggcg"; - return buildTranscriptModelFromUcscKnownGene("SHH", "ENTREZ6469", KG_LINE_SHH2, TRANSCRIPT_SEQ_SHH2); + return buildTranscriptModelFromUcscKnownGene(TestGeneFactory.SHH_IDENTIFIER, KG_LINE_SHH2, TRANSCRIPT_SEQ_SHH2); } /** @@ -73,7 +78,8 @@ public static TranscriptModel buildTMForSHH() { public static TranscriptModel buildTMForGNRHR2A() { final String KG_LINE_GNRHR2 = "uc009wiv.3\tchr1\t-\t145509751\t145515899\t145509859\t145510794\t4\t145509751,145510727,145515188,145515669,\t145510278,145510938,145515409,145515899,\tQ96P88\tuc009wiv.3"; final String TRANSCRIPT_SEQ_GNRHR2 = "atcttcgttccctgcagaaccttgacagttgaacaagtgacctcctccagaacagatggagagtctccagaagcagaggctttagtgaacgaaattcgcaataatcagctccagatcctgaaaaggagggcgaagaatcagtggccaaagctaaccgcttcatacccacacttcatcctcctcagtttctctccaggccaccatgtctgcaggcaacggcaccccttgggatgccacctggaatatcactgttcaatggctggctgtggacatcgcatgtcggacactgatgttcctgaaactaatggccacgtattctgcagctttcctgcctgtggtcattggattggaccgccaggcagcagtactcaacccgcttggatcccgttcaggtgtaaggaaacttctgggggcagcctggggacttagtttcctgcttgccttcccccagctgttcctgttccacacggtccactgagctggcccagtccctttcactcagtgtgtcaccaaaggcagcttcaaggctcaatggcaagagaccacctataacctcttcaccttctgctgcctctttctgctgccactgactgccatggccatctgctatagccgcattgtcctcagtgtgtccaggccccagacaaggaaggggagccatgcccctgctggtgaatttgccctcccccgctcctttgacaattgtccccgtgttcgtctccgggccctgagactggccctgcttatcttgctgaccttcatcctctgctggacaccttattacctactgggtatgtggtactggttctcccccaccatgctaactgaagtccctcccagcctgagccacatccttttcctcttgggcctcctcaatgctcctttggatcctctcctctatggggccttcacccttggctgccgaagagggcaccaagaacttagtatagactcttctaaagaagggtctgggagaatgctccaagaggagattcatgcctttagacagctggaagtacaaaaaactgtgacatcaagaagggcaggagaaacaaaaggcatttctataacatctatctgatcctaacagagtatgtaggaacagaatagtaagtctttagtgccataagatcttaacatctcacttctactcctgctctcctagttccccccaaaaaagaaatactga"; - return buildTranscriptModelFromUcscKnownGene("GNRHR2", "ENTREZ114814", KG_LINE_GNRHR2, TRANSCRIPT_SEQ_GNRHR2); + + return buildTranscriptModelFromUcscKnownGene(TestGeneFactory.GNRHR2_IDENTIFIER, KG_LINE_GNRHR2, TRANSCRIPT_SEQ_GNRHR2); } /** @@ -85,10 +91,10 @@ public static TranscriptModel buildTMForRBM8A() { final String KG_LINE_RBM8A = "uc001ent.2\tchr1\t+\t145507556\t145513535\t145507666\t145509211\t6\t145507556,145508015,145508206,145508474,145508915,145509165,\t145507733,145508075,145508284,145508611,145509052,145513535,\tQ9Y5S9\tuc001ent.2"; final String TRANSCRIPT_SEQ_RBM8A = "agagttagcctttgattggtcagcttgactggcgacctttcccctctgcgacagtttcccgaggtacctagtgtctgagcggcacagacgagatctcgatcgaaggcgagatggcggacgtgctagatcttcacgaggctgggggcgaagatttcgccatggatgaggatggggacgagagcattcacaaactgaaagaaaaagcgaagaaacggaagggtcgcggctttggctccgaagaggggtcccgagcgcggatgcgtgaggattatgacagcgtggagcaggatggcgatgaacccggaccacaacgctctgttgaaggctggattctctttgtaactggagtccatgaggaagccaccgaagaagacatacacgacaaattcgcagaatatggggaaattaaaaacattcatctcaacctcgacaggcgaacaggatatctgaaggggtatactctagttgaatatgaaacatacaaggaagcccaggctgctatggagggactcaatggccaggatttgatgggacagcccatcagcgttgactggtgttttgttcggggtccaccaaaaggcaagaggagaggtggccgaagacgcagcagaagtccagaccggagacgtcgctgacaggtcctctgttgtccaggtgttctcttcaagattccatttgaccatgcagccttggacaaataggactggggtggaacttgctgtgtttatatttaatctcttaccgtatatgcgtagtatttgagttgcgaataaatgttccatttttgttttctacatttaatgttactttcctgtcctaaaattgaaagttctaaagcatagcaaggctgtatggatcattgtgaagatacttctagggactgaactctatgtatttcttttttttcttttttttgagatagagtcttgctgtgttacccagggtggattgcagctgatcatagctcactgcagcttcaaactcttgggctcaagccatccttctgcctcactgtccctagtagttgggattacaggcacatgccaccatgcccagctaaatttttaatatttttgtagagatggggtcttgctgtgttacctgggctagttatgtgagtttctatattagacatagtctcaagtttcaggtagggtttaaagtagagacactggtcagtatttcttttttggggggaactaggagagcaggagtagaagtgagatgttaagatcttatggcactaaagacttactattctgttcctacatactctgttaggatcagatagatgttatagaaatgccttttgtttctcctgcccttcttgatgtcacagttttttgtacttccagctgtctaaaggcatgaatctcctcttggagcattctcccagacccttctttagaagagtctatactaagttcttggtgccctcttcggcagccaagggtgaaggccccatagaggagaggatccaaaggagcattgaggaggcccaagaggaaaaggatgtggctcaggctgggagggacttcagttagcatggtgggggagaaccagtaccacatacccagtaggtaataaggtgtccagcagaggatgaaggtcagcaagataagcagggccagtctcagggcccggagacgaacacggggacaattgtcaaaggagcgggggagggcaaattcaccagcaggggctaggaatttagaaaatatactgtaattcagacactcagcttctgatctgagtatagggtgaattgatggaggggcatagctagtgagacagagctcacctcctacaaggaggagaatgttgcaaaccgttttccccttcccaacctgggactatatgatttcttacccccagggattatgatagaaatatgaagccaccaagtctagacttgatggtgttcaagaataaataatactgattgcctccctagtccttgtccagctaactcagctgtttataattgaagggattcaacaaaattatctctagcatcaggtgctagacatggttagaatctcaccatggtttagtgactggtagatagctattaggtaggtagataaataaatgatgctagaggcaacaggtctagggttaaggattaaggcctgggaattggagtctcaccatggctccccttccttgtctggggcctggacacactgaggacaatgcggctatagcagatggccatggcagtcagtggcagcagaaagaggcagcagaaggtgaagaggttataggtggtctcttgccattgagccttgaagctgcctttggtgacacactgagtgaaagggactgggccagctcagtggaccgtgtggaacaggaacagctggagtggagttgaggactattagaactggttcccctcaccacccaacctacccacctatgtcatactgtctcctcccaattcatccttaattccaagtgaagcagcacagtgctgagaaacagttcatccatggtgccatgttaaagaagttggaaatatatcttgaaaatcctatcttccttttaggcttgaatatgatgctgaacagtaagtttgttaaatcttggaacttaaaacaatcctgctttctcaagtactattctaacattgcgctttataagggatgatatttctaccacctcactcatatttttagctgaaatgattttcctggtatgtctgttattttgtggaaaaagaaatattgtgtaaaatgggtgctgccaaaattccaggccattttgcagggactctgaagtgacctttagtagtaatagtcttatgtgcagtaactataatggtaaagaatgttaaataataaaatttaacattttccaaatgctattgggctgcccctccccctttttgttaaattgctgggttttccaactgaatcagtaaaaactatttctgtttagagctacaaggttaaagtgcctgctttccagtaatggagattgagtcactattaatttgataaaaggtaagctcagtaggcatcagattcctagatacaaggcatttgggaaagtgattttagcagacatgagggacatttaggaaagatgaatagtttcagcctaagagaattttgtgaactgtttggagttacgatcaggctactctgagctagttgggaaatggtctttcctcttcccatctcttgcattcatatatttctaagttttttttttttttttgtttttgtgctctgcctaagaagtgcttgagaattgtgaggagtataaaaatagtcaaagctggctgggcgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcgggcggatcacgaggttaggagatggagaccatcctggctaacacagtgaaaccctgtctgtactaaagatacaaaaaactagccgggcgtggtggtaggtgcctgtagtcccagctacttgggaactcgggaggctgaggcaggagaatgacctgaacccaggaggcggagcttgcagtgagcagagattgcgccattgcactccagcctgggcgacagagtaagactgtctccaaaaaaaaaaaaaataataatcaaagctcttggatttatagtttggtccacagccttgttttgatctttcctttatcctgttttattgccatttaccacgtactgtagaaacatccctttcaactgctgataacttggaaacaagcctacaaaaataagtaatttctaactactcctaatactacctataactacccctaagcccttaccactctaacgtgacattattaaattttttattttattaacactaatattttaactacaattacagcatatgggcaatacagaatttacctaaaaggatactaatttggaacaaaaaaaatcacctttcgcacatgtatcatgtcacaaccagtttgccattgaaacaaatagaggttgcaaatattgtcagattgtcaggctgtaagaaaggatgaaattcatttcccattgcatcatcttgtggcccatggatttcaagtgccttagccaaaatcatatagctagttagcagtagagccgagactcagaaaaaaacaaagtaaaacaggcagactgaaacaaaaagtcttctaattcccagtccacatgtaaaatttgcttcatataaacaaacctaattgtaaatggcactgtagcaacaggcttctttttaacacttggattggtaaaggtcttgtttgcaacatattagaagtattatttttctctttcccccccaccccacccccaacagagtctggctctgccgcccacgccggagtgcagtggtgcagtcttggctcactgcagcctccacttcccaggttcaagcaattctcgtgcctcagcctcctgagtagttgggattacaggtgctcaccactatacccggctaatttttgtatttttagtagagatggggtttcgtcatgttggccaggttggtcttaaactcctgacctcaagtgatccacccaccttggccttccaaaatgctgggattacaggcttgagccaccaggcctttctttgttcttaggagtatagtcagactaacttctagtagttatatttctaataattgaggatgtaagtaaggatcaaatcttaaatcagtataatgcattgtcattccagagataaatcctagacccttcttggcctccttctgacataattctaatcctacagtctcagagatgctgttgtatcctgccccccaaccccatgatagtgatagtggtttttgccttgaaggaattgctttgtatttagcttttccccctctagatttctagttccttttcagtattggattggatttgagatttgattaacctagtactcaggttcagatgctcgcctctttgcaattttaacactcattcgacaataaagtcagtaaaaaacacaaaaaaaaaaaaaaaa"; - return buildTranscriptModelFromUcscKnownGene("RBM8A", "ENTREZ9939", KG_LINE_RBM8A, TRANSCRIPT_SEQ_RBM8A); + return buildTranscriptModelFromUcscKnownGene(TestGeneFactory.RBM8A_IDENTIFIER, KG_LINE_RBM8A, TRANSCRIPT_SEQ_RBM8A); } - private static TranscriptModel buildTranscriptModelFromUcscKnownGene(String geneSymbol, String geneId, String knownGeneLine, String sequence) { + private static TranscriptModel buildTranscriptModelFromUcscKnownGene(GeneIdentifier geneIdentifier, String knownGeneLine, String sequence) { String[] fields = knownGeneLine.split("\t"); // these lines are from the UCSC knownGenes.txt.gz String accession = fields[0]; @@ -100,9 +106,12 @@ private static TranscriptModel buildTranscriptModelFromUcscKnownGene(String gene int cdsEnd = Integer.parseInt(fields[6]); int[][] exons = parseExons(fields[7], fields[8], fields[9]); - GeneTranscriptModelBuilder geneTranscriptModelBuilder = new GeneTranscriptModelBuilder(geneSymbol, geneId, accession, chr, strand, sequence) + Map altGeneIds = buildAltGeneIdentifiers(geneIdentifier); + + GeneTranscriptModelBuilder geneTranscriptModelBuilder = new GeneTranscriptModelBuilder(geneIdentifier.getGeneSymbol(), geneIdentifier.getEntrezId(), accession, chr, strand, sequence) .buildTxRegion(txStart, txEnd) - .buildCdsRegion(cdsStart, cdsEnd); + .buildCdsRegion(cdsStart, cdsEnd) + .addAltGeneIds(altGeneIds); for (int i = 0; i < exons.length; i++) { geneTranscriptModelBuilder.addExon(exons[i][0], exons[i][1]); @@ -134,4 +143,13 @@ private static int[][] parseExons(String count, String startPositions, String en return exons; } + private static Map buildAltGeneIdentifiers(GeneIdentifier geneIdentifier) { + Map altGeneIds = new HashMap<>(); + altGeneIds.put(AltGeneIDType.HGNC_ID.toString(), geneIdentifier.getHgncId()); + altGeneIds.put(AltGeneIDType.HGNC_SYMBOL.toString(), geneIdentifier.getHgncSymbol()); + altGeneIds.put(AltGeneIDType.ENTREZ_ID.toString(), geneIdentifier.getEntrezId()); + altGeneIds.put(AltGeneIDType.ENSEMBL_GENE_ID.toString(), geneIdentifier.getEnsemblId()); + altGeneIds.put(AltGeneIDType.UCSC_ID.toString(), geneIdentifier.getUcscId()); + return altGeneIds; + } } diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestVariantFactory.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestVariantFactory.java new file mode 100644 index 000000000..b072af4e1 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/TestVariantFactory.java @@ -0,0 +1,108 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.pedigree.Genotype; +import htsjdk.variant.variantcontext.Allele; +import htsjdk.variant.variantcontext.GenotypeBuilder; +import htsjdk.variant.variantcontext.VariantContext; +import htsjdk.variant.variantcontext.VariantContextBuilder; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Arrays; + +/** + * Helper class for constructing {@link Variant} objects for tests. + * + * The construction of {@link Variant} objects is quite complex but for tests, + * we would ideally have them for testing our data sets. This class helps us + * with the construction. + */ +public class TestVariantFactory { + + private static final Logger logger = LoggerFactory.getLogger(TestVariantFactory.class); + + private final VariantFactory variantFactory = TestFactory.buildDefaultVariantFactory(); + + /** + * Construct a new {@link Variant} object with the given values. n.b. this follows the VCF standard of being 1-based. + * + * @param chrom numeric chromosome id + * @param pos one-based position of the variant + * @param ref reference string + * @param alt alt string + * @param gt the Genotype to use + * @param readDepth depth the read depth to use + * @param altAlleleID alternative allele ID + * @param qual phred-scale quality + * @return {@link Variant} with the setting + */ + public VariantEvaluation buildVariant(int chrom, int pos, String ref, String alt, Genotype gt, int readDepth, int altAlleleID, double qual) { + VariantContext variantContext = buildVariantContext(chrom, pos, ref, alt, gt, readDepth, qual); + + return variantFactory.buildVariantEvaluation(variantContext, altAlleleID); + } + + private VariantContext buildVariantContext(int chrom, int pos, String ref, String alt, Genotype genotype, int readDepth, double qual) { + Allele refAllele = Allele.create(ref, true); + Allele altAllele = Allele.create(alt); + + // build Genotype + GenotypeBuilder genotypeBuilder = buildGenotype(genotype, readDepth, refAllele, altAllele); + + // build VariantContext + VariantContextBuilder vcBuilder = new VariantContextBuilder(); + vcBuilder.loc("chr" + chrom, pos, pos - 1L + ref.length()); + vcBuilder.alleles(Arrays.asList(refAllele, altAllele)); + vcBuilder.genotypes(genotypeBuilder.make()); + vcBuilder.attribute("RD", readDepth); + vcBuilder.log10PError(-0.1 * qual); + + return vcBuilder.make(); + } + + private GenotypeBuilder buildGenotype(Genotype gt, int readDepth, Allele refAllele, Allele altAllele) { + GenotypeBuilder gtBuilder = new GenotypeBuilder("sample"); + setGenotype(gtBuilder, refAllele, altAllele, gt); + gtBuilder.attribute("RD", readDepth); + return gtBuilder; + } + + private void setGenotype(GenotypeBuilder genotypeBuilder, Allele refAllele, Allele altAllele, Genotype genotype) { + switch (genotype) { + case HOMOZYGOUS_ALT: + genotypeBuilder.alleles(Arrays.asList(altAllele, altAllele)); + break; + case HOMOZYGOUS_REF: + genotypeBuilder.alleles(Arrays.asList(refAllele, refAllele)); + break; + case HETEROZYGOUS: + genotypeBuilder.alleles(Arrays.asList(refAllele, altAllele)); + break; + default: + break; + } + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantContextBuilder.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantContextBuilder.java new file mode 100644 index 000000000..98ef98040 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantContextBuilder.java @@ -0,0 +1,72 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import htsjdk.variant.variantcontext.VariantContext; +import htsjdk.variant.vcf.VCFCodec; +import htsjdk.variant.vcf.VCFHeader; +import htsjdk.variant.vcf.VCFHeaderVersion; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Arrays; +import java.util.HashSet; +import java.util.List; + +import static java.util.stream.Collectors.toList; + +/** + * Utility class for making variants for testing purposes. This removes the requirement for having to use actual VCF + * files as the variants can be specified locally in the code when required. + * + * @author Jules Jacobsen + */ +public class VariantContextBuilder { + + private static final Logger logger = LoggerFactory.getLogger(VariantContextBuilder.class); + + private final VCFCodec vcfCodec; + + public VariantContextBuilder(String... sampleNames) { + vcfCodec = new VCFCodec(); + VCFHeader header = new VCFHeader(new HashSet<>(), Arrays.asList(sampleNames)); + vcfCodec.setVCFHeader(header, VCFHeaderVersion.VCF4_1); + } + + /** + * Accepts a VCF formatted string either tab separated or using spaces in place of tabs to produce a VariantContext. + * Single sample: "1 123256213 . CA CC 0 . . GT 1/1" + * MultiSample examples: + * Single variation: "1 123256213 . CA CC 0 . . GT 1/1 0/1" + * Multi variantion: "1 123256213 . CA CC,CT 0 . . GT 1/1 1/2" + * + * @param vcfLine + * @return + */ + public VariantContext build(String vcfLine) { + vcfLine = vcfLine.replaceAll("[ ]+", "\t"); + return vcfCodec.decode(vcfLine); + } + + public List build(String... vcfLines) { + return Arrays.stream(vcfLines).map(this::build).collect(toList()); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceImplTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceImplTest.java new file mode 100644 index 000000000..82658887f --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceImplTest.java @@ -0,0 +1,249 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.InjectMocks; +import org.mockito.Mock; +import org.mockito.Mockito; +import org.mockito.runners.MockitoJUnitRunner; +import org.monarchinitiative.exomiser.core.genome.dao.*; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.RegulatoryFeature; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; +import org.monarchinitiative.exomiser.core.model.pathogenicity.*; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.*; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.notNullValue; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(MockitoJUnitRunner.class) +public class VariantDataServiceImplTest { + + @InjectMocks + private VariantDataServiceImpl instance; + @Mock + private FrequencyDao defaultFrequencyDao; + @Mock + private FrequencyDao localFrequencyDao; + @Mock + private PathogenicityDao mockPathogenicityDao; + @Mock + private RemmDao mockRemmDao; + @Mock + private CaddDao mockCaddDao; + @Mock + private RegulatoryFeatureDao mockRegulatoryFeatureDao; + @Mock + private TadDao mockTadDao; + + private static final Logger logger = LoggerFactory.getLogger(VariantDataServiceImplTest.class); + + private static final PathogenicityData PATH_DATA = PathogenicityData.of(PolyPhenScore.valueOf(1), MutationTasterScore + .valueOf(1), SiftScore.valueOf(0)); + private static final FrequencyData FREQ_DATA = FrequencyData.of(RsId.valueOf(1234567), Frequency.valueOf(100.0f, FrequencySource.ESP_AFRICAN_AMERICAN)); + private static final PathogenicityData CADD_DATA = PathogenicityData.of(CaddScore.valueOf(1)); + private static final VariantEffect REGULATORY_REGION = VariantEffect.REGULATORY_REGION_VARIANT; + + private VariantEvaluation variant; + + @Before + public void setUp() { + variant = buildVariantOfType(VariantEffect.MISSENSE_VARIANT); + Map allGenes = Collections.emptyMap(); + Mockito.when(mockPathogenicityDao.getPathogenicityData(variant)).thenReturn(PATH_DATA); + Mockito.when(defaultFrequencyDao.getFrequencyData(variant)).thenReturn(FREQ_DATA); + Mockito.when(localFrequencyDao.getFrequencyData(variant)).thenReturn(FrequencyData.empty()); + Mockito.when(mockCaddDao.getPathogenicityData(variant)).thenReturn(CADD_DATA); + } + + private VariantEvaluation buildVariantOfType(VariantEffect variantEffect) { + return VariantEvaluation.builder(1, 1, "A", "T").variantEffect(variantEffect).build(); + } + + @Test + public void testInstanceIsNotNull() { + assertThat(instance, notNullValue()); + } + + /* + * Ignore until sort out how VariantDataService should behave for CADD vs + * PathogenictyFilter swithc + */ + @Test + public void serviceReturnsPathogenicityDataForVariant() { + PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.POLYPHEN, PathogenicitySource.MUTATION_TASTER, PathogenicitySource.SIFT)); + assertThat(result, equalTo(PATH_DATA)); + } + + @Test + public void serviceReturnsEmptyPathogenicityDataForVariantWhenNoSourcesAreDefined() { + PathogenicityData result = instance.getVariantPathogenicityData(variant, Collections.emptySet()); + assertThat(result, equalTo(PathogenicityData.empty())); + } + + @Test + public void serviceReturnsSpecifiedPathogenicityDataForMissenseVariant() { + variant = buildVariantOfType(VariantEffect.MISSENSE_VARIANT); + PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.POLYPHEN)); + assertThat(result, equalTo(PathogenicityData.of(PolyPhenScore.valueOf(1f)))); + } + + @Test + public void serviceReturnsCaddDataForMissenseVariant() { + variant = buildVariantOfType(VariantEffect.MISSENSE_VARIANT); + PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.CADD)); + assertThat(result, equalTo(CADD_DATA)); + } + + @Test + public void serviceReturnsCaddAndStandardMissenseDescriptorDataForMissenseVariant() { + variant = buildVariantOfType(VariantEffect.MISSENSE_VARIANT); + PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.CADD, PathogenicitySource.POLYPHEN)); + + assertThat(result, equalTo(PathogenicityData.of(PolyPhenScore.valueOf(1f), CaddScore.valueOf(1f)))); + } + + @Test + public void serviceReturnsSpecifiedPathogenicityDataForKnownNonCodingVariant() { + variant = buildVariantOfType(VariantEffect.REGULATORY_REGION_VARIANT); + PathogenicityData expectedNcdsData = PathogenicityData.of(RemmScore.valueOf(1f)); + Mockito.when(mockRemmDao.getPathogenicityData(variant)).thenReturn(expectedNcdsData); + PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.REMM)); + assertThat(result, equalTo(expectedNcdsData)); + } + + @Test + public void serviceReturnsSpecifiedPathogenicityDataForNonCodingNonRegulatoryVariant() { + variant = buildVariantOfType(VariantEffect.SPLICE_REGION_VARIANT); + //Test that the REMM DAO is only called whe the variant type is of the type REMM is trained against. + Mockito.when(mockRemmDao.getPathogenicityData(variant)).thenReturn(PathogenicityData.of(RemmScore.valueOf(1f))); + PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.REMM)); + assertThat(result, equalTo(PathogenicityData.empty())); + } + + @Test + public void serviceReturnsCaddAndNonCodingScoreForKnownNonCodingVariant() { + variant = buildVariantOfType(VariantEffect.REGULATORY_REGION_VARIANT); + PathogenicityData expectedNcdsData = PathogenicityData.of(CaddScore.valueOf(1f), RemmScore.valueOf(1f)); + Mockito.when(mockRemmDao.getPathogenicityData(variant)).thenReturn(expectedNcdsData); + PathogenicityData result = instance.getVariantPathogenicityData(variant, EnumSet.of(PathogenicitySource.CADD, PathogenicitySource.REMM)); + assertThat(result, equalTo(expectedNcdsData)); + } + + @Test + public void serviceReturnsEmptyFrequencyDataWithRsIdForVariantWhenNoSourcesAreDefined() { + FrequencyData result = instance.getVariantFrequencyData(variant, Collections.emptySet()); + assertThat(result, equalTo(FrequencyData.of(RsId.valueOf(1234567)))); + } + + @Test + public void serviceReturnsFrequencyDataForVariant() { + FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.allOf(FrequencySource.class)); + assertThat(result, equalTo(FREQ_DATA)); + } + + @Test + public void serviceReturnsSpecifiedFrequencyDataForVariant() { + FrequencyData frequencyData = FrequencyData.of(RsId.valueOf(234567), Frequency.valueOf(1f, FrequencySource.ESP_AFRICAN_AMERICAN), Frequency + .valueOf(1f, FrequencySource.ESP_EUROPEAN_AMERICAN)); + Mockito.when(defaultFrequencyDao.getFrequencyData(variant)).thenReturn(frequencyData); + + FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.of(FrequencySource.ESP_AFRICAN_AMERICAN)); + assertThat(result, equalTo(FrequencyData.of(RsId.valueOf(234567), Frequency.valueOf(1f, FrequencySource.ESP_AFRICAN_AMERICAN)))); + } + + @Test + public void serviceReturnsLocalFrequencyDataForVariant() { + FrequencyData localFrequencyData = FrequencyData.of(RsId.empty(), Frequency.valueOf(2f, FrequencySource.LOCAL)); + Mockito.when(defaultFrequencyDao.getFrequencyData(variant)).thenReturn(FrequencyData.empty()); + Mockito.when(localFrequencyDao.getFrequencyData(variant)).thenReturn(localFrequencyData); + + FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.of(FrequencySource.LOCAL)); + assertThat(result, equalTo(localFrequencyData)); + } + + @Test + public void serviceReturnsLocalFrequencyDataForVariantWithRsIdIfKnown() { + FrequencyData localFrequencyData = FrequencyData.of(RsId.empty(), Frequency.valueOf(2f, FrequencySource.LOCAL)); + Mockito.when(localFrequencyDao.getFrequencyData(variant)).thenReturn(localFrequencyData); + + FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.of(FrequencySource.LOCAL)); + assertThat(result, equalTo(FrequencyData.of(RsId.valueOf(1234567), Frequency.valueOf(2f, FrequencySource.LOCAL)))); + } + + @Test + public void serviceReturnsSpecifiedFrequencyDataForVariantIncludingLocalData() { + FrequencyData frequencyData = FrequencyData.of(RsId.valueOf(234567), Frequency.valueOf(1f, FrequencySource.ESP_AFRICAN_AMERICAN), Frequency + .valueOf(1f, FrequencySource.ESP_EUROPEAN_AMERICAN)); + Mockito.when(defaultFrequencyDao.getFrequencyData(variant)).thenReturn(frequencyData); + + FrequencyData localFrequencyData = FrequencyData.of(RsId.empty(), Frequency.valueOf(2f, FrequencySource.LOCAL)); + Mockito.when(localFrequencyDao.getFrequencyData(variant)).thenReturn(localFrequencyData); + + FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.of(FrequencySource.ESP_AFRICAN_AMERICAN, FrequencySource.LOCAL)); + assertThat(result, equalTo(FrequencyData.of(RsId.valueOf(234567), Frequency.valueOf(1f, FrequencySource.ESP_AFRICAN_AMERICAN), Frequency + .valueOf(2f, FrequencySource.LOCAL)))); + } + + @Test + public void serviceReturnsEmptyFrequencyDataWhenSpecifiedFrequencyDataIsUnavailable() { + Mockito.when(defaultFrequencyDao.getFrequencyData(variant)).thenReturn(FrequencyData.empty()); + + FrequencyData result = instance.getVariantFrequencyData(variant, EnumSet.of(FrequencySource.LOCAL)); + assertThat(result, equalTo(FrequencyData.empty())); + } + + @Test + public void serviceReturnsRegulatoryFeatures() { + List regulatoryFeatures = Arrays.asList(new RegulatoryFeature(1, 10, 100, RegulatoryFeature.FeatureType.ENHANCER)); + Mockito.when(mockRegulatoryFeatureDao.getRegulatoryFeatures()).thenReturn(regulatoryFeatures); + + List result = instance.getRegulatoryFeatures(); + assertThat(result, equalTo(regulatoryFeatures)); + } + + @Test + public void serviceReturnsTopologicalDomains(){ + List tads = Arrays.asList(new TopologicalDomain(1, 1, 2, Collections.emptyMap())); + Mockito.when(mockTadDao.getAllTads()).thenReturn(tads); + + List topologicalDomains = instance.getTopologicallyAssociatedDomains(); + assertThat(topologicalDomains, equalTo(tads)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceMock.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceMock.java new file mode 100644 index 000000000..2533509be --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceMock.java @@ -0,0 +1,128 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome; + +import org.monarchinitiative.exomiser.core.model.RegulatoryFeature; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; + +import java.util.*; + +/** + * Mock of VariantDataService to provide canned responses for variants. Enables + * testing of the service without requiring any database back-end. This is + * backed by maps mapping the variants to their respective + * frequency/pathogenicity/whatever data. + * + * @author Jules Jacobsen + */ +public class VariantDataServiceMock extends VariantDataServiceImpl { + + private final Map expectedFrequencyData; + private final Map expectedPathogenicityData; + private final List expectedRegulatoryRegions; + private final List expectedTopologicalDomains; + + public VariantDataServiceMock() { + this.expectedFrequencyData = new HashMap<>(); + this.expectedPathogenicityData = new HashMap<>(); + this.expectedRegulatoryRegions = new ArrayList<>(); + this.expectedTopologicalDomains = new ArrayList<>(); + } + + public VariantDataServiceMock(Map expectedFrequencyData, Map expectedPathogenicityData, List expectedRegulatoryRegions, List expectedTopologicalDomains) { + this.expectedFrequencyData = expectedFrequencyData; + this.expectedPathogenicityData = expectedPathogenicityData; + this.expectedRegulatoryRegions = expectedRegulatoryRegions; + this.expectedTopologicalDomains = expectedTopologicalDomains; + } + + /** + * Adds the expected FrequencyData for the given Variant to the + * VariantDataService. + * + * @param variant + * @param frequencyData + */ + public void put(Variant variant, FrequencyData frequencyData) { + expectedFrequencyData.put(variant, frequencyData); + } + + /** + * Adds the expected PathogenicityData for the given Variant to the + * VariantDataService. + * + * @param variant + * @param pathogenicityData + */ + public void put(Variant variant, PathogenicityData pathogenicityData) { + expectedPathogenicityData.put(variant, pathogenicityData); + } + + /** + * Adds the expected RegulatoryFeature to the VariantDataService. + * + * @param regulatoryFeature + */ + public void put(RegulatoryFeature regulatoryFeature) { + expectedRegulatoryRegions.add(regulatoryFeature); + } + + /** + * Adds the expected TopologicalDomain to the VariantDataService. + * + * @param topologicalDomain + */ + public void put(TopologicalDomain topologicalDomain) { + expectedTopologicalDomains.add(topologicalDomain); + } + + @Override + public FrequencyData getVariantFrequencyData(Variant variant, Set frequencySources) { + FrequencyData allFrequencyData = expectedFrequencyData.getOrDefault(variant, FrequencyData.empty()); + return frequencyDataFromSpecifiedSources(allFrequencyData.getRsId(), allFrequencyData.getKnownFrequencies(), frequencySources); + } + + @Override + public PathogenicityData getVariantPathogenicityData(Variant variant, Set pathogenicitySources) { + PathogenicityData pathData = expectedPathogenicityData.getOrDefault(variant, PathogenicityData.empty()); + return pathDataFromSpecifiedDataSources(pathData.getPredictedPathogenicityScores(), pathogenicitySources); + } + + @Override + public List getRegulatoryFeatures() { + return expectedRegulatoryRegions; + } + + @Override + public List getTopologicallyAssociatedDomains() { + return expectedTopologicalDomains; + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceStub.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceStub.java new file mode 100644 index 000000000..b4d7d1a42 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantDataServiceStub.java @@ -0,0 +1,66 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome; + +import org.monarchinitiative.exomiser.core.model.RegulatoryFeature; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; + +import java.util.Collections; +import java.util.List; +import java.util.Set; + +/** + * + * @author Jules Jacobsen + */ +public class VariantDataServiceStub implements VariantDataService { + + @Override + public FrequencyData getVariantFrequencyData(Variant variant, Set frequencySources) { + return FrequencyData.empty(); + } + + @Override + public PathogenicityData getVariantPathogenicityData(Variant variant, Set pathogenicitySources) { + return PathogenicityData.empty(); + } + + @Override + public List getRegulatoryFeatures() { + return Collections.emptyList(); + } + + @Override + public List getTopologicallyAssociatedDomains() { + return Collections.emptyList(); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantFactoryStub.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantFactoryStub.java new file mode 100644 index 000000000..9c3654ddf --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantFactoryStub.java @@ -0,0 +1,39 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome; + +import com.google.common.collect.ImmutableList; +import de.charite.compbio.jannovar.data.JannovarData; +import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import de.charite.compbio.jannovar.reference.TranscriptModel; + +/** + * @author Jules Jacobsen + */ +public class VariantFactoryStub extends VariantFactory { + + + public VariantFactoryStub() { + super(new JannovarData(HG19RefDictBuilder.build(), new ImmutableList.Builder().build())); + } + +} + diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantFactoryTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantFactoryTest.java new file mode 100644 index 000000000..8b2092dfd --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/VariantFactoryTest.java @@ -0,0 +1,361 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.data.JannovarData; +import htsjdk.tribble.TribbleException; +import htsjdk.variant.variantcontext.Genotype; +import htsjdk.variant.variantcontext.GenotypeType; +import htsjdk.variant.variantcontext.GenotypesContext; +import htsjdk.variant.variantcontext.VariantContext; +import htsjdk.variant.vcf.VCFCodec; +import htsjdk.variant.vcf.VCFHeader; +import htsjdk.variant.vcf.VCFHeaderVersion; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; +import java.util.function.Consumer; +import java.util.stream.Stream; + +import static java.util.stream.Collectors.toList; +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class VariantFactoryTest { + + private final VariantFactory instance; + + public VariantFactoryTest() { + JannovarData jannovarData = TestFactory.buildDefaultJannovarData(); + instance = new VariantFactory(jannovarData); + } + + private Consumer printVariant() { + return variant -> { + GenotypesContext genotypes = variant.getVariantContext().getGenotypes(); + List genotypeTypes = genotypes.stream().map(Genotype::getType).collect(toList()); + System.out.printf("%s %s %s %s %s %s %s offExome=%s gene=%s %s%n", variant.getChromosome(), variant.getPosition(), variant + .getRef(), variant.getAlt(), variant.getGenotypeString(), genotypes, genotypeTypes, variant.isOffExome(), variant + .getGeneSymbol(), variant.getVariantContext()); + }; + } + + @Test + public void alternateConstructor() { + VariantFactory alternateFactory = new VariantFactory(TestFactory.buildDefaultJannovarData()); + assertThat(alternateFactory, notNullValue()); + } + + @Test(expected = TribbleException.class) + public void testCreateVariantContexts_NonExistentFile() { + Path vcfPath = Paths.get("src/test/resources/wibble.vcf"); + instance.streamVariantContexts(vcfPath); + } + + @Test + public void testCreateVariantContexts_SingleAlleles() { + Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); + long numVariants; + try (Stream variantStream = instance.streamVariantContexts(vcfPath)) { + numVariants = variantStream.count(); + } + assertThat(numVariants, equalTo(3L)); + } + + @Test + public void testStreamVariantContexts_SingleAlleles() { + Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); + List variants = instance.streamVariantContexts(vcfPath) + .filter(variantContext -> (variantContext.getContig().equals("1"))) + .collect(toList()); + + assertThat(variants.size(), equalTo(3)); + } + + @Test + public void testStreamCreateVariants_SingleAlleles() { + Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); + long numVariants; + try (Stream variants = instance.streamVariantEvaluations(vcfPath)) { + numVariants = variants + .peek(printVariant()) + .count(); + } + assertThat(numVariants, equalTo(3L)); + } + + @Test + public void testCreateVariantContexts_MultipleAlleles() { + Path vcfPath = Paths.get("src/test/resources/altAllele.vcf"); + List variants = instance.streamVariantContexts(vcfPath).collect(toList()); + assertThat(variants.size(), equalTo(1)); + } + + @Test + public void testCreateVariantContexts_MultipleAlleles_DiferentSingleSampleGenotypes() { + Path vcfPath = Paths.get("src/test/resources/multiAlleleGenotypes.vcf"); + List variants = instance.streamVariantEvaluations(vcfPath).collect(toList()); + variants.forEach(printVariant()); + assertThat(variants.size(), equalTo(11)); + } + + @Test + public void testCreateVariants_SingleAlleles() { + Path vcfPath = Paths.get("src/test/resources/smallTest.vcf"); + List variants = instance.streamVariantEvaluations(vcfPath).collect(toList()); + variants.forEach(printVariant()); + assertThat(variants.size(), equalTo(3)); + + } + + @Test + public void testCreateVariants_MultipleAllelesProduceOneVariantPerAllele() { + Path vcfPath = Paths.get("src/test/resources/altAllele.vcf"); + List variants = instance.streamVariantEvaluations(vcfPath).collect(toList()); + variants.forEach(printVariant()); + assertThat(variants.size(), equalTo(2)); + } + + @Test + public void testCreateVariants_MultipleAlleles_SingleSampleGenotypesShouldOnlyReturnRepresentedVariationFromGenotype() { + Path vcfPath = Paths.get("src/test/resources/multiAlleleGenotypes.vcf"); + List variants = instance.streamVariantEvaluations(vcfPath).collect(toList()); + variants.forEach(printVariant()); + assertThat(variants.size(), equalTo(11)); + } + + @Test + public void testCreateVariants_NoVariantAnnotationsProduceVariantEvaluationsWithNoAnnotations() { + Path vcfPath = Paths.get("src/test/resources/noAnnotations.vcf"); + List variants = instance.streamVariantEvaluations(vcfPath).collect(toList()); + assertThat(variants.size(), equalTo(2)); + + for (VariantEvaluation variant : variants) { + System.out.println(variant.getChromosomeName() + " " + variant); + assertThat(variant.hasAnnotations(), is(false)); + } + } + + @Test + public void testStreamVariantEvaluations_MultipleAlleles_DifferentSingleSampleGenotypes() { + Path vcfPath = Paths.get("src/test/resources/multiAlleleGenotypes.vcf"); + List variants = instance.streamVariantEvaluations(vcfPath).collect(toList()); + assertThat(variants.size(), equalTo(11)); + } + + @Test + public void testKnownSingleSampleSnp() { + Stream variantContexts = VcfParser.forSamples("Sample") + .parse("10\t123256215\t.\tT\tG\t100\tPASS\tGENE=FGFR2;INHERITANCE=AD;MIM=101600\tGT\t1|0"); + List variants = instance.streamVariantEvaluations(variantContexts) + .peek(printVariant()) + .collect(toList()); + assertThat(variants.size(), equalTo(1)); + VariantEvaluation variantEvaluation = variants.get(0); + System.out.println(variantEvaluation); + assertThat(variantEvaluation.getChromosome(), equalTo(10)); + assertThat(variantEvaluation.getChromosomeName(), equalTo("10")); + assertThat(variantEvaluation.getPosition(), equalTo(123256215)); + assertThat(variantEvaluation.getRef(), equalTo("T")); + assertThat(variantEvaluation.getAlt(), equalTo("G")); + assertThat(variantEvaluation.hasAnnotations(), is(true)); + System.out.println(variantEvaluation.getAnnotations()); + assertThat(variantEvaluation.getEntrezGeneId(), equalTo(2263)); + assertThat(variantEvaluation.getGeneSymbol(), equalTo("FGFR2")); + assertThat(variantEvaluation.getVariantEffect(), equalTo(VariantEffect.MISSENSE_VARIANT)); + } + + @Test + public void testUnKnownSingleSampleSnp() { + Stream variantContexts = VcfParser.forSamples("Sample") + .parse("UNKNOWN\t12345\t.\tT\tC\t0\tPASS\t.\tGT:DP\t0/1:21"); + List variants = instance.streamVariantEvaluations(variantContexts) + .peek(printVariant()) + .collect(toList()); + assertThat(variants.size(), equalTo(1)); + VariantEvaluation variantEvaluation = variants.get(0); + System.out.println(variantEvaluation); + assertThat(variantEvaluation.getChromosome(), equalTo(0)); + assertThat(variantEvaluation.getChromosomeName(), equalTo("UNKNOWN")); + assertThat(variantEvaluation.getPosition(), equalTo(12345)); + assertThat(variantEvaluation.getRef(), equalTo("T")); + assertThat(variantEvaluation.getAlt(), equalTo("C")); + assertThat(variantEvaluation.hasAnnotations(), is(false)); + System.out.println(variantEvaluation.getAnnotations()); + assertThat(variantEvaluation.getEntrezGeneId(), equalTo(-1)); + assertThat(variantEvaluation.getGeneSymbol(), equalTo(".")); + assertThat(variantEvaluation.getVariantEffect(), equalTo(VariantEffect.SEQUENCE_VARIANT)); + } + + /** + * See https://github.com/exomiser/Exomiser/issues/207#issuecomment-310123621 + */ + @Test + public void testSingleSampleDeletion() { + Stream variantContexts = VcfParser.forSamples("Sample") + .parse("1\t123256213\t.\tCA\tC\t100.15\tPASS\tGENE=RBM8A\tGT:DP\t0/1:33"); + List variants = instance.streamVariantEvaluations(variantContexts) + .peek(printVariant()) + .collect(toList()); + assertThat(variants.size(), equalTo(1)); + VariantEvaluation variantEvaluation = variants.get(0); + System.out.println(variantEvaluation); + assertThat(variantEvaluation.getChromosome(), equalTo(1)); + assertThat(variantEvaluation.getChromosomeName(), equalTo("1")); + assertThat(variantEvaluation.getPosition(), equalTo(123256213)); + assertThat(variantEvaluation.getRef(), equalTo("CA")); + assertThat(variantEvaluation.getAlt(), equalTo("C")); + assertThat(variantEvaluation.hasAnnotations(), is(true)); + System.out.println(variantEvaluation.getAnnotations()); + assertThat(variantEvaluation.getEntrezGeneId(), equalTo(9939)); + assertThat(variantEvaluation.getGeneSymbol(), equalTo("RBM8A")); + assertThat(variantEvaluation.getVariantEffect(), equalTo(VariantEffect.INTERGENIC_VARIANT)); + } + + @Test + public void testSnpWithNoGenotypeReturnsNothing() { + Stream variantContexts = VcfParser.forSamples().parse("UNKNOWN\t12345\t.\tT\tC\t0\tPASS\t."); + List variants = instance.streamVariantEvaluations(variantContexts) + .peek(printVariant()) + .collect(toList()); + assertThat(variants.isEmpty(), is(true)); + } + + @Test + public void testSingleSampleHomVar() { + Stream variantContexts = VcfParser.forSamples("Sample") + .parse("1\t120612040\t.\tT\tTCCGCCG\t258.62\tPASS\t.\tGT\t1/1"); + List variants = instance.streamVariantEvaluations(variantContexts) + .peek(printVariant()) + .collect(toList()); + assertThat(variants.size(), equalTo(1)); + } + + @Test + public void testSingleSampleMultiPosition() { + Stream variantContexts = VcfParser.forSamples("Sample") + .parse("1\t120612040\t.\tT\tTCCGCCG,TCCTCCGCCG\t258.62\tPASS\t.\tGT\t1/2"); + List variants = instance.streamVariantEvaluations(variantContexts) + .peek(printVariant()) + .collect(toList()); + //TODO: Should this really be 1? Genotype is [Sample TCCGCCG/TCCTCCGCCG] + assertThat(variants.size(), equalTo(2)); + } + + @Test + public void testMultiSampleMultiPositionAlleleIsSplitIntoAlternateAlleles() { + Stream variantContexts = VcfParser.forSamples("Sample1", "Sample2") + .parse("1\t120612040\t.\tT\tTCCGCCG,TCCTCCGCCG\t258.62\tPASS\t.\tGT\t0/1\t0/2"); + List variants = instance.streamVariantEvaluations(variantContexts) + .peek(printVariant()) + .collect(toList()); + assertThat(variants.size(), equalTo(2)); + VariantEvaluation firstAllele = variants.get(0); + System.out.println(firstAllele); + assertThat(firstAllele.getChromosome(), equalTo(1)); + assertThat(firstAllele.getChromosomeName(), equalTo("1")); + assertThat(firstAllele.getPosition(), equalTo(120612040)); + assertThat(firstAllele.getRef(), equalTo("T")); + assertThat(firstAllele.getAlt(), equalTo("TCCGCCG")); + assertThat(firstAllele.hasAnnotations(), is(true)); + System.out.println(firstAllele.getAnnotations()); + assertThat(firstAllele.getEntrezGeneId(), equalTo(9939)); + assertThat(firstAllele.getGeneSymbol(), equalTo("RBM8A")); + assertThat(firstAllele.getVariantEffect(), equalTo(VariantEffect.INTERGENIC_VARIANT)); + + + VariantEvaluation secondAllele = variants.get(1); + System.out.println(secondAllele); + assertThat(secondAllele.getChromosome(), equalTo(1)); + assertThat(secondAllele.getChromosomeName(), equalTo("1")); + assertThat(secondAllele.getPosition(), equalTo(120612040)); + assertThat(secondAllele.getRef(), equalTo("T")); + assertThat(secondAllele.getAlt(), equalTo("TCCTCCGCCG")); + assertThat(secondAllele.hasAnnotations(), is(true)); + System.out.println(secondAllele.getAnnotations()); + assertThat(secondAllele.getEntrezGeneId(), equalTo(9939)); + assertThat(secondAllele.getGeneSymbol(), equalTo("RBM8A")); + assertThat(secondAllele.getVariantEffect(), equalTo(VariantEffect.INTERGENIC_VARIANT)); + } + + @Test + public void testMultiSampleMultiPositionOnlyOneAltAlleleIsPresentInSamplesProducesOneVariantEvaluation() { + Stream variantContexts = VcfParser.forSamples("Sample1", "Sample2") + .parse("1\t120612040\t.\tT\tTCCGCCG,TCCTCCGCCG\t258.62\tPASS\t.\tGT\t0/1\t0/1"); + List variants = instance.streamVariantEvaluations(variantContexts) + .peek(printVariant()) + .collect(toList()); + assertThat(variants.size(), equalTo(1)); + VariantEvaluation variantEvaluation = variants.get(0); + System.out.println(variantEvaluation); + assertThat(variantEvaluation.getChromosome(), equalTo(1)); + assertThat(variantEvaluation.getChromosomeName(), equalTo("1")); + assertThat(variantEvaluation.getPosition(), equalTo(120612040)); + assertThat(variantEvaluation.getRef(), equalTo("T")); + assertThat(variantEvaluation.getAlt(), equalTo("TCCGCCG")); + assertThat(variantEvaluation.hasAnnotations(), is(true)); + System.out.println(variantEvaluation.getAnnotations()); + assertThat(variantEvaluation.getEntrezGeneId(), equalTo(9939)); + assertThat(variantEvaluation.getGeneSymbol(), equalTo("RBM8A")); + assertThat(variantEvaluation.getVariantEffect(), equalTo(VariantEffect.INTERGENIC_VARIANT)); + } + + private static class VcfParser { + + private final VCFCodec vcfCodec; + + static VcfParser forSamples(String... sampleNames) { + return new VcfParser(sampleNames); + } + + private VcfParser(String... sampleNames) { + vcfCodec = getVcfCodecForSamples(sampleNames); + } + + private VCFCodec getVcfCodecForSamples(String... sampleNames) { + VCFCodec vcfCodec = new VCFCodec(); + vcfCodec.setVCFHeader(new VCFHeader(Collections.emptySet(), Arrays.asList(sampleNames)), VCFHeaderVersion.VCF4_2); + return vcfCodec; + } + + Stream parse(String... lines) { + return Stream.of(lines).map(vcfCodec::decode); + } + + Stream parse(String line) { + return Stream.of(line).map(vcfCodec::decode); + } + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/CaddDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/CaddDaoTest.java new file mode 100644 index 000000000..66307ca1e --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/CaddDaoTest.java @@ -0,0 +1,212 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import htsjdk.tribble.readers.TabixReader; +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mock; +import org.mockito.Mockito; +import org.mockito.runners.MockitoJUnitRunner; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.pathogenicity.CaddScore; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; + +import java.io.IOException; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +@RunWith(MockitoJUnitRunner.class) +public class CaddDaoTest { + + private CaddDao instance; + + @Mock + private TabixReader snvTabixReader; + @Mock + private TabixReader indelTabixReader; + + @Before + public void setUp() { + //What's all this about? Well we're removing the requirement for reading files from disk + //by mocking the TabixReaders. Unfortunately these are concrete classes with no interface so + //the mocking is event based with canned answers coming from Mockito which replicates an + //internal call in the Dao: + //TabixReader.Iterator results = inDelTabixReader.query(chromosome, start, start); + //The MockTabixIterator will return a list of lines + TabixDataSource snvTabixDataSource = new TabixReaderAdaptor(snvTabixReader); + TabixDataSource inDelTabixDataSource = new TabixReaderAdaptor(indelTabixReader); + instance = new CaddDao(inDelTabixDataSource, snvTabixDataSource); + } + + private static VariantEvaluation variant(int chr, int pos, String ref, String alt) { + return VariantEvaluation.builder(chr, pos, ref, alt).build(); + } + + private void assertPathDataContainsCaddScore(PathogenicityData result, float score) { + CaddScore expected = CaddScore.valueOf(score); + assertThat(result, equalTo(PathogenicityData.of(expected))); + } + + @Test + public void testGetPathogenicityData_unableToReadFromSnvSource() { + Mockito.when(snvTabixReader.query("1:2-2")).thenThrow(IOException.class); + assertThat(instance.getPathogenicityData(variant(1, 2, "A", "T")), equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_snvNoData() { + Mockito.when(snvTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.empty()); + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "T")); + assertThat(result, equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_insertionNoData() { + Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.empty()); + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "C", "CA")); + assertThat(result, equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_unableToReadFromInDelSource() { + Mockito.when(indelTabixReader.query("2:14985-14985")).thenThrow(IOException.class); + assertThat(instance.getPathogenicityData(variant(2, 14985, "A", "AT")), equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_insertionSingleVariantAtPosition_NoMatch() { + Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of( + "1\t1\tA\tAT\t-0.234\t3.45", + "1\t1\tA\tAC\t-0.234\t4.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "AG")); + assertThat(result, equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_insertionSingleVariantAtPosition_OneMatch() { + Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of("1\t2\tA\tAA\t-0.234\t3.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "AA")); + assertPathDataContainsCaddScore(result, 0.54814404f); + } + + @Test + public void testGetPathogenicityData_insertionMultipleVariantsAtPosition_OneMatch() { + Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of( + "\t\tA\tAC\t-0.234\t4.45", + "\t\tA\tAT\t-0.234\t3.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "AT")); + assertPathDataContainsCaddScore(result, 0.54814404f); + } + + @Test + public void testGetPathogenicityData_deletionNoData() { + Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.empty()); + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "AT", "T")); + assertThat(result, equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_deletionSingleVariantAtPosition_NoMatch() { + Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of( + "1\t1\tAT\tA\t-0.234\t3.45", + "1\t1\tAC\tA\t-0.234\t4.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "AG", "A")); + assertThat(result, equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_deletionSingleVariantAtPosition_OneMatch() { + Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of("1\t2\tGT\tG\t-0.234\t3.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "GT", "G")); + assertPathDataContainsCaddScore(result, 0.54814404f); + } + + @Test + public void testGetPathogenicityData_deletionMultipleVariantsAtPosition_OneMatch() { + Mockito.when(indelTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of( + "\t\tAC\tA\t-0.234\t4.45", + "\t\tAT\tA\t-0.234\t3.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "AT", "A")); + assertPathDataContainsCaddScore(result, 0.54814404f); + } + + @Test + public void testGetPathogenicityData_snvSingleVariantAtPosition_NoMatch() { + Mockito.when(snvTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of( + "1\t1\tA\tT\t-0.234\t3.45", + "1\t1\tA\tC\t-0.234\t4.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "G")); + assertThat(result, equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_snvSingleVariantAtPosition_OneMatch() { + Mockito.when(snvTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of("1\t1\tA\tT\t-0.234\t3.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "T")); + assertPathDataContainsCaddScore(result, 0.54814404f); + } + + @Test + public void testGetPathogenicityData_snvXchrSingleVariantAtPosition_OneMatch() { + Mockito.when(snvTabixReader.query("X:1-1")).thenReturn(MockTabixIterator.of("1\t1\tA\tT\t-0.234\t3.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(23, 1, "A", "T")); + assertPathDataContainsCaddScore(result, 0.54814404f); + } + + @Test + public void testGetPathogenicityData_snvYchrSingleVariantAtPosition_OneMatch() { + Mockito.when(snvTabixReader.query("Y:1-1")).thenReturn(MockTabixIterator.of("1\t1\tA\tT\t-0.234\t3.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(24, 1, "A", "T")); + assertPathDataContainsCaddScore(result, 0.54814404f); + } + + @Test + public void testGetPathogenicityData_snvMultipleVariantsAtPosition_OneMatch() { + Mockito.when(snvTabixReader.query("1:2-2")).thenReturn(MockTabixIterator.of( + "\t\tA\tT\t-0.234\t3.45", + "\t\tA\tC\t-0.234\t4.45")); + + PathogenicityData result = instance.getPathogenicityData(variant(1, 2, "A", "T")); + assertPathDataContainsCaddScore(result, 0.54814404f); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultFrequencyDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultFrequencyDaoTest.java new file mode 100644 index 000000000..865de8638 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultFrequencyDaoTest.java @@ -0,0 +1,97 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; +import org.monarchinitiative.exomiser.core.prioritisers.config.TestDataSourceConfig; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.jdbc.Sql; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + + +/** + * + * @author Jules Jacobsen + */ +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(classes = {TestDataSourceConfig.class, DefaultFrequencyDao.class}) +@Sql(scripts = { + "file:src/test/resources/sql/create_frequency.sql", + "file:src/test/resources/sql/frequencyDaoTestData.sql" +}) +public class DefaultFrequencyDaoTest { + + @Autowired + private DefaultFrequencyDao instance; + + private Variant variantNotInDatabase; + private Variant variantInDatabaseWithRsId; + + private RsId rsId = RsId.valueOf(121918506); + private Frequency dbSnp = Frequency.valueOf(0.01f, FrequencySource.THOUSAND_GENOMES); + private Frequency espAll = Frequency.valueOf(0.02f, FrequencySource.ESP_ALL); + private Frequency espAa = Frequency.valueOf(0.03f, FrequencySource.ESP_AFRICAN_AMERICAN); + private Frequency espEa = Frequency.valueOf(0.04f, FrequencySource.ESP_EUROPEAN_AMERICAN); + + private static final FrequencyData NO_DATA = FrequencyData.empty(); + + @Before + public void setUp() { + variantNotInDatabase = VariantEvaluation.builder(1, 124, "T", "G").build(); + //Exomiser currently uses ONE_BASED numbering - be wary.... + variantInDatabaseWithRsId = VariantEvaluation.builder(10, 123256215, "T", "G").build(); + } + + @Test + public void testVariantNotInDatabaseReturnsAnEmptyFrequencyData() { + FrequencyData result = instance.getFrequencyData(variantNotInDatabase); + + assertThat(result, equalTo(NO_DATA)); + assertThat(result.isRepresentedInDatabase(), is(false)); + } + + @Test + public void testVariantInDatabaseReturnsFrequencyData() { + FrequencyData result = instance.getFrequencyData(variantInDatabaseWithRsId); + FrequencyData expected = FrequencyData.of(rsId, dbSnp, espAa, espAll, espEa); + assertThat(result, equalTo(expected)); + assertThat(result.isRepresentedInDatabase(), is(true)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultPathogenicityDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultPathogenicityDaoTest.java new file mode 100644 index 000000000..fe6ea0e32 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/DefaultPathogenicityDaoTest.java @@ -0,0 +1,150 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.model.Variant; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.pathogenicity.*; +import org.monarchinitiative.exomiser.core.prioritisers.config.TestDataSourceConfig; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.jdbc.Sql; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(classes = {TestDataSourceConfig.class, DefaultPathogenicityDao.class}) +@Sql(scripts = { + "file:src/test/resources/sql/create_pathogenicity.sql", + "file:src/test/resources/sql/pathogenicityDaoTestData.sql" +}) +public class DefaultPathogenicityDaoTest { + + @Autowired + private DefaultPathogenicityDao instance; + + private static final SiftScore SIFT_SCORE = SiftScore.valueOf(0f); + private static final PolyPhenScore POLY_PHEN_SCORE = PolyPhenScore.valueOf(0.998f); + private static final MutationTasterScore MUTATION_TASTER_SCORE = MutationTasterScore.valueOf(1.0f); + private static final CaddScore CADD_SCORE = CaddScore.valueOf(23.7f); + + private final Variant missenseVariantInDatabase = makeMissenseVariant(10, 123256215, "T", "G"); + + private Variant makeMissenseVariant(int chr, int pos, String ref, String alt) { + return VariantEvaluation.builder(chr, pos, ref, alt) + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .build(); + } + + @Test + public void testNonMissenseVariantReturnsAnEmptyPathogenicityData() { + Variant nonMissenseVariant = VariantEvaluation.builder(0, 0, "A", "T") + .variantEffect(VariantEffect.DOWNSTREAM_GENE_VARIANT) + .build(); + PathogenicityData result = instance.getPathogenicityData(nonMissenseVariant); + + assertThat(result, equalTo(PathogenicityData.empty())); + assertThat(result.hasPredictedScore(), is(false)); + } + + @Test + public void testMissenseVariantReturnsAnEmptyPathogenicityDataWhenNotInDatabase() { + Variant missenseVariantNotInDatabase = makeMissenseVariant(0, 0, "T", "G"); + PathogenicityData result = instance.getPathogenicityData(missenseVariantNotInDatabase); + + assertThat(result, equalTo(PathogenicityData.empty())); + assertThat(result.hasPredictedScore(), is(false)); + } + + @Test + public void testMissenseVariantReturnsPathogenicityDataWhenInDatabase() { + PathogenicityData result = instance.getPathogenicityData(missenseVariantInDatabase); + PathogenicityData expected = PathogenicityData.of(POLY_PHEN_SCORE, MUTATION_TASTER_SCORE, SIFT_SCORE); + assertThat(result, equalTo(expected)); + } + + /** + * As of 20150511 we're not going to use the CADD data from the database as + * it requires normalising and hasn't been using it will COMPLETELY FUBAR + * THE PATHOGENICITY FILTER, so don't add it back until it's normalised on + * a 0-1 scale. + */ + @Test + public void testPathogenicityDaoDoesNotReturnCaddScoreEvenWhenPresentInDatabase() { + PathogenicityData result = instance.getPathogenicityData(missenseVariantInDatabase); + assertThat(result.hasPredictedScore(PathogenicitySource.CADD), is(false)); + } + + @Test + public void testMissenseVariantInDatabaseWithNullSift() { + Variant missenseVariantWithNullSift = makeMissenseVariant(1, 1, "A", "T"); + PathogenicityData result = instance.getPathogenicityData(missenseVariantWithNullSift); + PathogenicityData expected = PathogenicityData.of(POLY_PHEN_SCORE, MUTATION_TASTER_SCORE); + assertThat(result, equalTo(expected)); + } + + @Test + public void testMissenseVariantInDatabaseWithNullCadd() { + Variant missenseVariantWithNullCadd = makeMissenseVariant(1, 4, "A", "T"); + PathogenicityData result = instance.getPathogenicityData(missenseVariantWithNullCadd); + PathogenicityData expected = PathogenicityData.of(POLY_PHEN_SCORE, MUTATION_TASTER_SCORE, SIFT_SCORE); + assertThat(result, equalTo(expected)); + } + + @Test + public void testMissenseVariantInDatabaseWithNullPolyPhen() { + Variant missenseVariantWithNullPolyPhen = makeMissenseVariant(1, 2, "A", "T"); + PathogenicityData result = instance.getPathogenicityData(missenseVariantWithNullPolyPhen); + PathogenicityData expected = PathogenicityData.of(MUTATION_TASTER_SCORE, SIFT_SCORE); + assertThat(result, equalTo(expected)); + } + + @Test + public void testMissenseVariantInDatabaseWithNullMutTaster() { + Variant missenseVariantWithNullMutTaster = makeMissenseVariant(1, 3, "A", "T"); + PathogenicityData result = instance.getPathogenicityData(missenseVariantWithNullMutTaster); + PathogenicityData expected = PathogenicityData.of(POLY_PHEN_SCORE, SIFT_SCORE); + assertThat(result, equalTo(expected)); + } + + @Test + public void testMissenseVariantWithMultipleRowsReturnsBestScores() { + Variant missenseVariantWithMultipleRows = makeMissenseVariant(1, 5, "A", "T"); + PathogenicityData result = instance.getPathogenicityData(missenseVariantWithMultipleRows); + PathogenicityData expected = PathogenicityData.of(POLY_PHEN_SCORE, MUTATION_TASTER_SCORE, SIFT_SCORE); + assertThat(result, equalTo(expected)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/ErrorThrowingTabixDataSourceTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/ErrorThrowingTabixDataSourceTest.java new file mode 100644 index 000000000..cfd28c122 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/ErrorThrowingTabixDataSourceTest.java @@ -0,0 +1,56 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome.dao; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class ErrorThrowingTabixDataSourceTest { + + @Test(expected = IllegalArgumentException.class) + public void testQueryString() throws Exception { + TabixDataSource instance = new ErrorThrowingTabixDataSource("LOCAL"); + instance.query("X:12345-12345"); + } + + @Test(expected = IllegalArgumentException.class) + public void testEmptyQueryString() throws Exception { + TabixDataSource instance = new ErrorThrowingTabixDataSource("LOCAL"); + instance.query(""); + } + + @Test(expected = IllegalArgumentException.class) + public void testEmptyQuery() throws Exception { + TabixDataSource instance = new ErrorThrowingTabixDataSource("LOCAL"); + instance.query("X", 12345, 12345); + } + + @Test + public void testGetSourceReturnsEmptyString() throws Exception { + TabixDataSource instance = new ErrorThrowingTabixDataSource("LOCAL"); + assertThat(instance.getSource(), equalTo("No source")); + } +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/LocalFrequencyDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/LocalFrequencyDaoTest.java new file mode 100644 index 000000000..88f2dbed5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/LocalFrequencyDaoTest.java @@ -0,0 +1,161 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome.dao; + +import htsjdk.tribble.readers.TabixReader; +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mock; +import org.mockito.Mockito; +import org.mockito.runners.MockitoJUnitRunner; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +@RunWith(MockitoJUnitRunner.class) +public class LocalFrequencyDaoTest { + + private LocalFrequencyDao instance; + + @Mock + private TabixReader tabixReader; + + @Before + public void setUp() { + TabixDataSource tabixDataSource = new TabixReaderAdaptor(tabixReader); + instance = new LocalFrequencyDao(tabixDataSource); + } + + private VariantEvaluation variant(int chr, int pos, String ref, String alt) { + return VariantEvaluation.builder(chr, pos, ref, alt).build(); + } + + private FrequencyData localFrequencyData(float freq) { + return FrequencyData.of(RsId.empty(), Frequency.valueOf(freq, FrequencySource.LOCAL)); + } + + //Local frequency file defined as tab-delimited lines in 'VCF-lite' format: + //chr pos ref alt freq(%) + //1 12345 A T 23.0 (an A->T SNP on chr1 at position 12345 with frequency of 23.0%) + //note in the usual VCF format these would be on a single line + //1 12345 A TG 0.01 (an A->TG insertion on chr1 at position 12345 with frequency of 0.01%) + //1 12345 AT G 0.02 (an AT->G deletion on chr1 at position 12345 with frequency of 0.02%) + //1 12345 T . 0.03 (an T->. monomorphic site (no alt allele) on chr1 at position 12345 with frequency of 0.03%) + //non-autosomes + //X 12345 AT G 0.02 (an AT->G deletion on chrX at position 12345 with frequency of 0.02%) + //Y 12345 AT G 0.02 (an AT->G deletion on chrY at position 12345 with frequency of 0.02%) + //M 12345 AT G 0.02 (an AT->G deletion on chrM at position 12345 with frequency of 0.02%) + + @Test + public void variantNotInFile() { + Mockito.when(tabixReader.query("1:12345-12345")) + .thenReturn(MockTabixIterator.empty()); + + assertThat(instance.getFrequencyData(variant(1, 12345, "A", "T")), equalTo(FrequencyData.empty())); + } + + @Test + public void testAutosomalSnp() { + //1 12345 A T 23.0 (an A->T SNP on chr1 at position 12345 with frequency of 23.0%) + Mockito.when(tabixReader.query("1:12345-12345")) + .thenReturn(MockTabixIterator.of("1\t12345\tA\tT\t23.0")); + + assertThat(instance.getFrequencyData(variant(1, 12345, "A", "T")), equalTo(localFrequencyData(23.0f))); + } + + @Test + public void testSexXsnp() { + Mockito.when(tabixReader.query("X:12345-12345")) + .thenReturn(MockTabixIterator.of("X\t12345\tA\tT\t23.0")); + + assertThat(instance.getFrequencyData(variant(23, 12345, "A", "T")), equalTo(localFrequencyData(23.0f))); + } + + @Test + public void testSexYsnp() { + Mockito.when(tabixReader.query("Y:12345-12345")) + .thenReturn(MockTabixIterator.of("Y\t12345\tA\tT\t23.0")); + + assertThat(instance.getFrequencyData(variant(24, 12345, "A", "T")), equalTo(localFrequencyData(23.0f))); + } + + @Test + public void testMitochondrialSnp() { + Mockito.when(tabixReader.query("M:12345-12345")) + .thenReturn(MockTabixIterator.of("M\t12345\tA\tT\t23.0")); + + assertThat(instance.getFrequencyData(variant(25, 12345, "A", "T")), equalTo(localFrequencyData(23.0f))); + } + + @Test + public void testInsertionIndel(){ + //1 12345 A TG 0.01 (an A->TG insertion on chr1 at position 12345 with frequency of 0.01%) + Mockito.when(tabixReader.query("1:12345-12345")) + .thenReturn(MockTabixIterator.of("1\t12345\tA\tTG\t0.01")); + + assertThat(instance.getFrequencyData(variant(1, 12345, "A", "TG")), equalTo(localFrequencyData(0.01f))); + } + + @Test + public void testSnpAndInsertionAtSamePositionInSourceFile(){ + //1 12345 A TG 0.01 (an A->TG insertion on chr1 at position 12345 with frequency of 0.01%) + Mockito.when(tabixReader.query("1:12345-12345")) + .thenReturn(MockTabixIterator.of("1\t12345\tA\tT\t23.0", "1\t12345\tA\tTG\t0.01")); + + assertThat(instance.getFrequencyData(variant(1, 12345, "A", "TG")), equalTo(localFrequencyData(0.01f))); + } + + @Test + public void testDeletionIndel(){ + //1 12345 AT G 0.02 (an AT->G deletion on chr1 at position 12345 with frequency of 0.02%) + Mockito.when(tabixReader.query("1:12345-12345")) + .thenReturn(MockTabixIterator.of("1\t12345\tAT\tG\t0.02")); + + assertThat(instance.getFrequencyData(variant(1, 12345, "AT", "G")), equalTo(localFrequencyData(0.02f))); + } + + @Test + public void testInsertion(){ + //1 12345 T . 0.03 (an T->. monomorphic site (no alt allele) on chr1 at position 12345 with frequency of 0.03%) + Mockito.when(tabixReader.query("1:12345-12345")) + .thenReturn(MockTabixIterator.of("1\t12345\tA\tAT\t0.03")); + + assertThat(instance.getFrequencyData(variant(1, 12345, "A", "AT")), equalTo(localFrequencyData(0.03f))); + } + + @Test + public void testDeletion(){ + //1 12345 T . 0.03 (an T->. monomorphic site (no alt allele) on chr1 at position 12345 with frequency of 0.03%) + Mockito.when(tabixReader.query("1:12345-12345")) + .thenReturn(MockTabixIterator.of("1\t12345\tAT\tA\t0.03")); + + assertThat(instance.getFrequencyData(variant(1, 12345, "AT", "A")), equalTo(localFrequencyData(0.03f))); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/MockTabixIterator.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/MockTabixIterator.java new file mode 100644 index 000000000..d94ea388a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/MockTabixIterator.java @@ -0,0 +1,81 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import htsjdk.tribble.readers.TabixReader; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +/** + * Mocks the TabixIterator returned from the TabixReader.query() method to + * return a given set of values. + * + * @author Jules Jacobsen + */ +class MockTabixIterator implements TabixReader.Iterator { + + private static final Logger logger = LoggerFactory.getLogger(MockTabixIterator.class); + + private static final MockTabixIterator EMPTY = new MockTabixIterator(Collections.emptyList()); + + private final List values; + private int pos; + + private MockTabixIterator(List values) { + this.values = values; + pos = 0; + } + + public static MockTabixIterator of(String... values) { + return new MockTabixIterator(Arrays.asList(values)); + } + + public static MockTabixIterator of(List values) { + return new MockTabixIterator(values); + } + + public static MockTabixIterator empty() { + return EMPTY; + } + + @Override + public String next() { + if (pos < values.size()) { + return values.get(pos++); + } + return null; + } + + @Override + public String toString() { + return "MockTabixIterator{" + "values=" + values + '}'; + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/RegulatoryFeatureDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/RegulatoryFeatureDaoTest.java new file mode 100644 index 000000000..2f0e0d8c5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/RegulatoryFeatureDaoTest.java @@ -0,0 +1,73 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome.dao; + +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.model.RegulatoryFeature; +import org.monarchinitiative.exomiser.core.prioritisers.config.TestDataSourceConfig; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.jdbc.Sql; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; + +import java.util.ArrayList; +import java.util.List; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(classes = {TestDataSourceConfig.class, RegulatoryFeatureDao.class}) +@Sql(scripts = { + "file:src/test/resources/sql/create_regulatory_features.sql", + "file:src/test/resources/sql/regulatoryFeatureTestData.sql" +}) +public class RegulatoryFeatureDaoTest { + + @Autowired + private RegulatoryFeatureDao instance; + + @Test + public void testGetAllRegulatoryFeatures() { + List regulatoryFeatures = new ArrayList<>(); + +// (11, 96762600, 96763399, 'Enhancer'), + regulatoryFeatures.add(new RegulatoryFeature(11, 96762600, 96763399, RegulatoryFeature.FeatureType.ENHANCER)); +// (11, 96798354, 96798827, 'FANTOM permissive'), + regulatoryFeatures.add(new RegulatoryFeature(11, 96798354, 96798827, RegulatoryFeature.FeatureType.FANTOM_PERMISSIVE)); +// (11, 96820460, 96821548, 'unrecognised type'); +// regulatoryFeatures.add(new RegulatoryFeature(11, 96820460, 96821548, UNKNOWN)); + + List results = instance.getRegulatoryFeatures(); + + assertThat(results.size(), equalTo(2)); + + for (RegulatoryFeature result : results) { + assertThat(regulatoryFeatures, hasItem(result)); + assertThat(result.getFeatureType(), not(RegulatoryFeature.FeatureType.UNKNOWN)); + } + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/RemmDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/RemmDaoTest.java new file mode 100644 index 000000000..1fbd95146 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/RemmDaoTest.java @@ -0,0 +1,120 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.genome.dao; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import htsjdk.tribble.readers.TabixReader; +import htsjdk.variant.variantcontext.VariantContext; +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mock; +import org.mockito.Mockito; +import org.mockito.runners.MockitoJUnitRunner; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.RemmScore; + +import java.io.IOException; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(MockitoJUnitRunner.class) +public class RemmDaoTest { + + private RemmDao instance; + + @Mock + private TabixReader remmTabixReader; + + @Before + public void setUp() { + TabixDataSource tabixDataSource = new TabixReaderAdaptor(remmTabixReader); + instance = new RemmDao(tabixDataSource); + } + + private static VariantEvaluation variant(int chr, int pos, String ref, String alt) { + if (ref.equals("-") || alt.equals("-")) { + //this is used to get round the fact that in real life the variant evaluation + //is built from a variantContext and some variantAnnotations + return VariantEvaluation.builder(chr, pos, ref, alt) + .variantContext(Mockito.mock(VariantContext.class)) + .build(); + } + return VariantEvaluation.builder(chr, pos, ref, alt) + .variantEffect(VariantEffect.REGULATORY_REGION_VARIANT) + .build(); + } + + @Test + public void testGetPathogenicityData_missenseVariant() { + //missense variants are by definition protein-coding and therefore cannot be non-coding so we expect nothing + VariantEvaluation missenseVariant = VariantEvaluation.builder(1, 1, "A", "T") + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .build(); + assertThat(instance.getPathogenicityData(missenseVariant), equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_unableToReadFromSource() { + Mockito.when(remmTabixReader.query("1:1-1")).thenThrow(IOException.class); + assertThat(instance.getPathogenicityData(variant(1, 1, "A", "T")), equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_singleNucleotideVariationNoData() { + Mockito.when(remmTabixReader.query("1:1-1")).thenReturn(MockTabixIterator.empty()); + + assertThat(instance.getPathogenicityData(variant(1, 1, "A", "T")), equalTo(PathogenicityData.empty())); + } + + @Test + public void testGetPathogenicityData_singleNucleotideVariation() { + Mockito.when(remmTabixReader.query("1:1-1")).thenReturn(MockTabixIterator.of("1\t1\t1.0")); + + assertThat(instance.getPathogenicityData(variant(1, 1, "A", "T")), equalTo(PathogenicityData.of(RemmScore.valueOf(1f)))); + } + + @Test + public void testGetPathogenicityData_insertion() { + Mockito.when(remmTabixReader.query("1:1-2")).thenReturn(MockTabixIterator.of("1\t1\t0.0", "1\t2\t1.0")); + + assertThat(instance.getPathogenicityData(variant(1, 1, "A", "ATTT")), equalTo(PathogenicityData.of(RemmScore.valueOf(1f)))); + } + + @Test + public void testGetPathogenicityData_deletion() { + MockTabixIterator mockIterator = MockTabixIterator.of("1\t1\t0.0", "1\t2\t0.5", "1\t3\t1.0", "1\t4\t0.0"); + Mockito.when(remmTabixReader.query("1:1-4")).thenReturn(mockIterator); + + assertThat(instance.getPathogenicityData(variant(1, 1, "ATTT", "A")), equalTo(PathogenicityData.of(RemmScore.valueOf(1f)))); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/TadDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/TadDaoTest.java new file mode 100644 index 000000000..94302b8e3 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/genome/dao/TadDaoTest.java @@ -0,0 +1,94 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.genome.dao; + +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.model.TopologicalDomain; +import org.monarchinitiative.exomiser.core.prioritisers.config.TestDataSourceConfig; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.jdbc.Sql; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; + +import java.util.ArrayList; +import java.util.LinkedHashMap; +import java.util.List; +import java.util.Map; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(classes = {TestDataSourceConfig.class, TadDao.class}) +@Sql(scripts = {"file:src/test/resources/sql/create_tad.sql", "file:src/test/resources/sql/tadDaoTestData.sql"}) +public class TadDaoTest { + + @Autowired + private TadDao instance; + + @Test + public void testGetAllTads() { + //some real TADS (cut short) + Map genes1 = new LinkedHashMap<>(); + genes1.put("ISG15", 9636); + genes1.put("TNFRSF4", 7293); + TopologicalDomain tad1 = new TopologicalDomain(1, 770137, 1250137, genes1); + + Map genes2 = new LinkedHashMap<>(); + genes2.put("MMP23B", 8510); + TopologicalDomain tad2 = new TopologicalDomain(1, 1250137, 1850140, genes2); + + Map genes3 = new LinkedHashMap<>(); + genes3.put("LBH", 81606); + genes3.put("LCLAT1", 253558); + genes3.put("YPEL5", 51646); + TopologicalDomain tad3 = new TopologicalDomain(2, 30346496, 30906496, genes3); + + //fictitious overlapping domains - these might occur. + Map genes4 = new LinkedHashMap<>(); + genes4.put("GENE1", 11111); + TopologicalDomain tad4 = new TopologicalDomain(2, 30346496, 30800000, genes4); + + Map genes5 = new LinkedHashMap<>(); + genes5.put("GENE2", 22222); + TopologicalDomain tad5 = new TopologicalDomain(2, 30200000, 30800000, genes5); + + Map genes6 = new LinkedHashMap<>(); + genes6.put("GENE3", 33333); + genes6.put("GENE4", 44444); + TopologicalDomain tad6 = new TopologicalDomain(2, 30100000, 30600000, genes6); + + List expected = new ArrayList<>(); + expected.add(tad1); + expected.add(tad2); + expected.add(tad3); + expected.add(tad4); + expected.add(tad5); + expected.add(tad6); + + assertThat(instance.getAllTads(), equalTo(expected)); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/AllelePositionTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/AllelePositionTest.java new file mode 100644 index 000000000..5f5f7b8b5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/AllelePositionTest.java @@ -0,0 +1,469 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; +import static org.monarchinitiative.exomiser.core.model.AllelePosition.*; + +/** + * @author Jules Jacobsen + */ +public class AllelePositionTest { + + @Test(expected = NullPointerException.class) + public void testNullRef() { + AllelePosition instance = trim(1, null, "A"); + } + + @Test(expected = NullPointerException.class) + public void testNullAlt() { + AllelePosition instance = trim(1, "T", null); + } + + @Test + public void testEmptyRef() { + AllelePosition instance = trim(1, "", "TA"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("")); + assertThat(instance.getAlt(), equalTo("TA")); + } + + @Test + public void testEmptyAlt() { + AllelePosition instance = trim(1, "TA", ""); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("TA")); + assertThat(instance.getAlt(), equalTo("")); + } + + @Test + public void testIsSnv() { + assertThat(isSnv("A", "T"), is(true)); + assertThat(isSnv("AA", "GT"), is(false)); + assertThat(isSnv("ATT", "A"), is(false)); + assertThat(isSnv("T", "TTA"), is(false)); + } + + @Test + public void testIsInsertion() { + assertThat(isInsertion("A", "T"), is(false)); + assertThat(isInsertion("AA", "GT"), is(false)); + assertThat(isInsertion("ATT", "A"), is(false)); + assertThat(isInsertion("T", "TTA"), is(true)); + } + + @Test + public void testIsDeletion() { + assertThat(isDeletion("A", "T"), is(false)); + assertThat(isDeletion("AA", "GT"), is(false)); + assertThat(isDeletion("ATT", "A"), is(true)); + assertThat(isDeletion("T", "TTA"), is(false)); + } + + @Test + public void testEvaOne() { + AllelePosition instance = trim(1000, "AGTTC", "AGCC"); + + assertThat(instance.getPos(), equalTo(1002)); + assertThat(instance.getRef(), equalTo("TT")); + assertThat(instance.getAlt(), equalTo("C")); + } + + /* + * Taken from https://macarthurlab.org/2014/04/28/converting-genetic-variants-to-their-minimal-representation/ + * #CHROM POS ID REF ALT + * 1 1001 . CTCC CCC,C,CCCC + */ + @Test + public void testMcArthurCoLocatedOne() { + AllelePosition instance = trim(1001, "CTCC", "CCC"); + + assertThat(instance.getPos(), equalTo(1001)); + assertThat(instance.getRef(), equalTo("CT")); + assertThat(instance.getAlt(), equalTo("C")); + } + + @Test + public void testMcArthurCoLocatedTwo() { + AllelePosition instance = trim(1001, "CTCC", "C"); + + assertThat(instance.getPos(), equalTo(1001)); + assertThat(instance.getRef(), equalTo("CTCC")); + assertThat(instance.getAlt(), equalTo("C")); + } + + @Test + public void testMcArthurCoLocatedThree() { + AllelePosition instance = trim(1001, "CTCC", "CCCC"); + + assertThat(instance.getPos(), equalTo(1002)); + assertThat(instance.getRef(), equalTo("T")); + assertThat(instance.getAlt(), equalTo("C")); + } + + /** + * Cases taken from + * https://github.com/ericminikel/minimal_representation/blob/master/test_minimal_representation.py + */ + @Test + public void testMcArthurMinimals() { + assertThat(trim(1001, "CTCC", "CCCC"), equalTo(AllelePosition.of(1002, "T", "C"))); + assertThat(trim(1001, "CTCC", "CCC"), equalTo(AllelePosition.of(1001, "CT", "C"))); + assertThat(trim(1001, "CTCC", "CTC"), equalTo(AllelePosition.of(1002, "TC", "T"))); + assertThat(trim(1001, "CTAG", "CTG"), equalTo(AllelePosition.of(1002, "TA", "T"))); + assertThat(trim(1001, "CTCC", "CTACC"), equalTo(AllelePosition.of(1002, "T", "TA"))); + assertThat(trim(1001, "TCAGCAGCAG", "TCAGCAG"), equalTo(AllelePosition.of(1001, "TCAG", "T"))); + assertThat(trim(1001, "CTT", "CTTT"), equalTo(AllelePosition.of(1001, "C", "CT"))); + assertThat(trim(1001, "CTT", "C"), equalTo(AllelePosition.of(1001, "CTT", "C"))); + assertThat(trim(1001, "CTT", "CT"), equalTo(AllelePosition.of(1001, "CT", "C"))); + assertThat(trim(1001, "AAAATATATATAT", "A"), equalTo(AllelePosition.of(1001, "AAAATATATATAT", "A"))); + assertThat(trim(1001, "AAAATATATATAT", "AATAT"), equalTo(AllelePosition.of(1001, "AAAATATAT", "A"))); + assertThat(trim(1001, "ACACACACAC", "AACAC"), equalTo(AllelePosition.of(1001, "ACACAC", "A"))); + } + + + @Test + public void testEvaCoLocatedOne() { + AllelePosition instance = trim(1000, "TGACGTAACGATT", "T"); + + assertThat(instance.getPos(), equalTo(1000)); + assertThat(instance.getRef(), equalTo("TGACGTAACGATT")); + assertThat(instance.getAlt(), equalTo("T")); + } + + @Test + public void testEvaCoLocatedTwo() { + AllelePosition instance = trim(1000, "TGACGTAACGATT", "TGACGTAACGGTT"); + + assertThat(instance.getPos(), equalTo(1010)); + assertThat(instance.getRef(), equalTo("A")); + assertThat(instance.getAlt(), equalTo("G")); + } + + @Test + public void testEvaCoLocatedThree() { + AllelePosition instance = trim(1000, "TGACGTAACGATT", "TGACGTAATAC"); + + assertThat(instance.getPos(), equalTo(1008)); + assertThat(instance.getRef(), equalTo("CGATT")); + assertThat(instance.getAlt(), equalTo("TAC")); + } + + @Test + public void testOriginalReferencesNotMutated() { + int pos = 2; + String ref = "GGCA"; + String alt = "GG"; + + AllelePosition instance = trim(pos, ref, alt); + System.out.println(instance); + assertThat(instance.getPos(), equalTo(3)); + assertThat(instance.getRef(), equalTo("GCA")); + assertThat(instance.getAlt(), equalTo("G")); + + assertThat(pos, equalTo(2)); + assertThat(ref, equalTo("GGCA")); + assertThat(alt, equalTo("GG")); + } + + @Test + public void testSnv() { + AllelePosition instance = trim(1, "A", "T"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("A")); + assertThat(instance.getAlt(), equalTo("T")); + } + + @Test + public void testTrimLeftRef() { + AllelePosition instance = trim(1, "AT", "AA"); + + assertThat(instance.getPos(), equalTo(2)); + assertThat(instance.getRef(), equalTo("T")); + assertThat(instance.getAlt(), equalTo("A")); + } + + @Test + public void testTrimLeftAlt() { + AllelePosition instance = trim(1, "AA", "AT"); + + assertThat(instance.getPos(), equalTo(2)); + assertThat(instance.getRef(), equalTo("A")); + assertThat(instance.getAlt(), equalTo("T")); + } + + @Test + public void testTrimRightRef() { + AllelePosition instance = trim(1, "TA", "AA"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("T")); + assertThat(instance.getAlt(), equalTo("A")); + } + + @Test + public void testTrimRightAlt() { + AllelePosition instance = trim(1, "AA", "TA"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("A")); + assertThat(instance.getAlt(), equalTo("T")); + } + + @Test + public void testMnpTrimLeft() { + AllelePosition instance = trim(4, "GCAT", "GTGC"); + System.out.println(instance); + assertThat(instance.getPos(), equalTo(5)); + assertThat(instance.getRef(), equalTo("CAT")); + assertThat(instance.getAlt(), equalTo("TGC")); + } + + @Test + public void testMnpTrimRight() { + AllelePosition instance = trim(5, "CATG", "TGCG"); + System.out.println(instance); + assertThat(instance.getPos(), equalTo(5)); + assertThat(instance.getRef(), equalTo("CAT")); + assertThat(instance.getAlt(), equalTo("TGC")); + } + + @Test + public void testMnpTrimLeftAndRight() { + AllelePosition instance = trim(4, "GCATG", "GTGCG"); + System.out.println(instance); + assertThat(instance.getPos(), equalTo(5)); + assertThat(instance.getRef(), equalTo("CAT")); + assertThat(instance.getAlt(), equalTo("TGC")); + } + + @Test + public void testInsertionLeftBaseDifferent() { + AllelePosition instance = trim(1, "T", "ATG"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("T")); + assertThat(instance.getAlt(), equalTo("ATG")); + } + + @Test + public void testInsertionLeftBaseEqual() { + AllelePosition instance = trim(1, "T", "TATG"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("T")); + assertThat(instance.getAlt(), equalTo("TATG")); + } + + @Test + public void testInsertionRightBaseEqual() { + AllelePosition instance = trim(1, "G", "TATG"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("G")); + assertThat(instance.getAlt(), equalTo("TATG")); + } + + @Test + public void testInsertionRightBaseEqualDuplicated() { + AllelePosition instance = trim(1, "GG", "TATGG"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("G")); + assertThat(instance.getAlt(), equalTo("TATG")); + } + +// a variant is normalized, we simply need to manipulate the variant till the rightmost ends of the alleles are not the same, +// and apply truncation to the superfluous nucleotides on the left side of the variant to obtain a normalized variant. + +// The algorithm to normalize a biallelic or multiallelic variant is as follows +// 1. The alleles end with at least two different nucleotides. +// 2. The alleles start with at least two different nucleotides, or the shortest allele has length 1 + + @Test + public void testTrimRightDeletion() { + AllelePosition instance = trim(3, "GCACA", "GCA"); + + assertThat(instance.getPos(), equalTo(3)); + assertThat(instance.getRef(), equalTo("GCA")); + assertThat(instance.getAlt(), equalTo("G")); + } + + @Test + public void testTrimLeftDeletion() { + AllelePosition instance = trim(2, "GGCA", "GG"); + System.out.println(instance); + assertThat(instance.getPos(), equalTo(3)); + assertThat(instance.getRef(), equalTo("GCA")); + assertThat(instance.getAlt(), equalTo("G")); + } + + @Test + public void testParsimoniousInsertion() { + //http://genome.sph.umich.edu/wiki/Variant_Normalization + //this should really be left aligned, but we can't do that as we have nothing to align against + AllelePosition instance = trim(1, "C", "CAC"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("C")); + assertThat(instance.getAlt(), equalTo("CAC")); + } + + @Test + public void testParsimoniousDeletion() { + //http://genome.sph.umich.edu/wiki/Variant_Normalization + //this should really be left aligned, but we can't do that as we have nothing to align against + AllelePosition instance = trim(1, "CAC", "C"); + + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("CAC")); + assertThat(instance.getAlt(), equalTo("C")); + } + + @Test + public void testMnpCouldBeSplit() { + AllelePosition instance = trim(1, "TCT", "CCC"); + //note - this can be expressed as two alleles: + //1 T C + //3 T C + assertThat(instance.getPos(), equalTo(1)); + assertThat(instance.getRef(), equalTo("TCT")); + assertThat(instance.getAlt(), equalTo("CCC")); + } + + @Test + public void testLongerSnvNeedsRightAndLeftTrim() { + AllelePosition instance = trim(1, "TTTTATATGCATTCTTATCTTTTTATATGCATTCTTA", "TTTTATATGCATTCTTACCCTTTTATATGCATTCTTA"); + //note - this can be expressed as two alleles: + //1 T C + //3 T C + assertThat(instance.getPos(), equalTo(18)); + assertThat(instance.getRef(), equalTo("TCT")); + assertThat(instance.getAlt(), equalTo("CCC")); + } + + @Test + public void testStructutalVariant() { + assertThat(trim(4477084, "C", ""), equalTo(AllelePosition.of(4477084, "C", ""))); + } + + @Test + public void testRearrangementBreakends() { + assertThat(trim(321681, "G", "G]17:198982]"), equalTo(AllelePosition.of(321681, "G", "G]17:198982]"))); + assertThat(trim(321682, "T", "]13:123456]T"), equalTo(AllelePosition.of(321682, "T", "]13:123456]T"))); + assertThat(trim(123456, "C", "C[2:321682["), equalTo(AllelePosition.of(123456, "C", "C[2:321682["))); + assertThat(trim(123457, "A", "[17:198983[A"), equalTo(AllelePosition.of(123457, "A", "[17:198983[A"))); + assertThat(trim(198982, "A", "A]2:321681]"), equalTo(AllelePosition.of(198982, "A", "A]2:321681]"))); + assertThat(trim(198983, "C", "[13:123457[C"), equalTo(AllelePosition.of(198983, "C", "[13:123457[C"))); + } + + @Test + public void testInsertionBreakends() { + assertThat(trim(32168, "T", "]13 : 123456]AGTNNNNNCAT"), equalTo(AllelePosition.of(32168, "T", "]13 : 123456]AGTNNNNNCAT"))); + assertThat(trim(123456, "C", "CAGTNNNNNCA[2 : 321682["), equalTo(AllelePosition.of(123456, "C", "CAGTNNNNNCA[2 : 321682["))); + } + + @Test + public void testTelomericBreakends() { + assertThat(trim(0, "N", ".[13 : 123457["), equalTo(AllelePosition.of(0, "N", ".[13 : 123457["))); + assertThat(trim(1, "T", "]13 : 123456]T"), equalTo(AllelePosition.of(1, "T", "]13 : 123456]T"))); + assertThat(trim(123456, "C", "C[1 : 1["), equalTo(AllelePosition.of(123456, "C", "C[1 : 1["))); + assertThat(trim(123457, "A", "]1 : 0]A"), equalTo(AllelePosition.of(123457, "A", "]1 : 0]A"))); + } + + + /** + * Nirvana style trimming: + * https://github.com/Illumina/Nirvana/blob/master/VariantAnnotation/Algorithms/BiDirectionalTrimmer.cs + */ + static AllelePosition trimNirvana(int pos, String ref, String alt) { + // do not trim if ref and alt are same + if (ref.equals(alt)) return AllelePosition.of(pos, ref, alt); + + if (ref == null) ref = ""; + if (alt == null) alt = ""; + + // trimming at the start + int i = 0; + while (i < ref.length() && i < alt.length() && ref.charAt(i) == alt.charAt(i)) { + i++; + } + + if (i > 0) { + pos += i; + alt = alt.substring(i); + ref = ref.substring(i); + } + + // trimming at the end + int j = 0; + while (j < ref.length() && j < alt.length() && ref.charAt(ref.length() - j - 1) == alt.charAt(alt.length() - j - 1)) { + j++; + } + + if (j <= 0) { + return AllelePosition.of(pos, ref, alt); + } + + alt = alt.substring(0, alt.length() - j); + ref = ref.substring(0, ref.length() - j); + return AllelePosition.of(pos, ref, alt); + } + + /** + * Jannovar style trimming: + * https://github.com/charite/jannovar/blob/master/jannovar-core/src/main/java/de/charite/compbio/jannovar/reference/VariantDataCorrector.java + */ + AllelePosition trimJannovar(int pos, String ref, String alt) { + int idx = 0; + // beginning + while (idx < ref.length() && idx < alt.length() && ref.charAt(idx) == alt.charAt(idx)) { + idx++; + } + if (idx == ref.length() && idx == alt.length() && idx > 0) + idx -= 1; + pos += idx; + ref = ref.substring(idx); + alt = alt.substring(idx); + + // end + int xdi = ref.length(); + int diff = ref.length() - alt.length(); + while (xdi > 0 && xdi - diff > 0 && ref.charAt(xdi - 1) == alt.charAt(xdi - 1 - diff)) { + xdi--; + } + if (xdi == 0 && ref.length() > 0 && alt.length() > 0) + xdi += 1; + ref = xdi == 0 ? "" : ref.substring(0, xdi); + alt = xdi - diff == 0 ? "" : alt.substring(0, xdi - diff); + + return AllelePosition.of(pos, ref, alt); + } + //See also GATK 4: + // https://github.com/broadinstitute/gatk/blob/master/src/main/java/org/broadinstitute/hellbender/utils/variant/GATKVariantContextUtils.java#L1033 +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneIdentifierTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneIdentifierTest.java new file mode 100644 index 000000000..fba0ecf26 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneIdentifierTest.java @@ -0,0 +1,131 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.is; +import static org.hamcrest.Matchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class GeneIdentifierTest { + + private static final GeneIdentifier EMPTY_GENE_IDENTIFIER = GeneIdentifier.builder().build(); + + @Test(expected = NullPointerException.class) + public void testConstructorChecksForNullGeneSymbol() { + GeneIdentifier.builder().geneSymbol(null).build(); + } + + @Test(expected = NullPointerException.class) + public void testConstructorChecksGeneIdIsNotNull() { + new Gene(GeneIdentifier.builder().geneId(null).build()); + } + + @Test(expected = NullPointerException.class) + public void testConstructorChecksEntrezIdIsNotNull() { + new Gene(GeneIdentifier.builder().entrezId(null).build()); + } + + @Test(expected = IllegalArgumentException.class) + public void testConstructorChecksEntrezIdIsValidInteger() { + new Gene(GeneIdentifier.builder().entrezId("wibble").build()); + } + + @Test + public void getGeneId() { + assertThat(EMPTY_GENE_IDENTIFIER.getGeneId(), equalTo(GeneIdentifier.EMPTY_FIELD)); + GeneIdentifier instance = GeneIdentifier.builder() + .geneId("12345") + .build(); + assertThat(instance.getGeneId(), equalTo("12345")); + } + + @Test + public void getGeneSymbol() { + assertThat(EMPTY_GENE_IDENTIFIER.getGeneSymbol(), equalTo(GeneIdentifier.EMPTY_FIELD)); + GeneIdentifier instance = GeneIdentifier.builder() + .geneSymbol("ABC1") + .build(); + assertThat(instance.getGeneSymbol(), equalTo("ABC1")); + } + + @Test + public void getHgncId() { + assertThat(EMPTY_GENE_IDENTIFIER.getHgncId(), equalTo(GeneIdentifier.EMPTY_FIELD)); + GeneIdentifier instance = GeneIdentifier.builder() + .hgncId("hgnc") + .build(); + assertThat(instance.getHgncId(), equalTo("hgnc")); + } + + @Test + public void getHgncSymbol() { + assertThat(EMPTY_GENE_IDENTIFIER.getHgncSymbol(), equalTo(GeneIdentifier.EMPTY_FIELD)); + GeneIdentifier instance = GeneIdentifier.builder() + .hgncSymbol("name") + .build(); + assertThat(instance.getHgncSymbol(), equalTo("name")); + } + + @Test + public void testEntrezIdentifier() { + assertThat(EMPTY_GENE_IDENTIFIER.getEntrezId(), equalTo(GeneIdentifier.EMPTY_FIELD)); + assertThat(EMPTY_GENE_IDENTIFIER.getEntrezIdAsInteger(), equalTo(-1)); + + GeneIdentifier instance = GeneIdentifier.builder() + .entrezId("2263") + .build(); + assertThat(instance.getEntrezId(), equalTo("2263")); + assertThat(instance.getEntrezIdAsInteger(), equalTo(2263)); + } + + @Test + public void getEnsemblId() { + assertThat(EMPTY_GENE_IDENTIFIER.getEnsemblId(), equalTo(GeneIdentifier.EMPTY_FIELD)); + GeneIdentifier instance = GeneIdentifier.builder() + .ensemblId("ensemble") + .build(); + assertThat(instance.getEnsemblId(), equalTo("ensemble")); + } + + @Test + public void getUcscId() { + assertThat(EMPTY_GENE_IDENTIFIER.getUcscId(), equalTo(GeneIdentifier.EMPTY_FIELD)); + GeneIdentifier instance = GeneIdentifier.builder() + .ucscId("ucscId") + .build(); + assertThat(instance.getUcscId(), equalTo("ucscId")); + } + + @Test + public void testKnownGeneIdentifier() { + assertThat(EMPTY_GENE_IDENTIFIER.hasEntrezId(), is(false)); + GeneIdentifier geneIdentifier = GeneIdentifier.builder() + .entrezId("2263") + .build(); + assertThat(geneIdentifier.hasEntrezId(), is(true)); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneTest.java new file mode 100644 index 000000000..df564a36d --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneTest.java @@ -0,0 +1,555 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model; + +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.prioritisers.ExomeWalkerPriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.MockPriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; + +import java.util.*; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; +import static org.junit.Assert.assertTrue; + +/** + * + * @author Jules Jacobsen + */ +public class GeneTest { + + private Gene instance; + + private static final String GENE1_SYMBOL = "GENE1"; + private static final String GENE1_GENE_ID = "1234567"; + private static final int GENE1_ENTREZ_GENE_ID = 1234567; + private static final GeneIdentifier GENE1_GENE_IDENTIFIER = GeneIdentifier.builder() + .geneSymbol(GENE1_SYMBOL) + .geneId(GENE1_GENE_ID) + .entrezId(GENE1_GENE_ID) + .build(); + + private VariantEvaluation variantEvaluation1; + private VariantEvaluation variantEvaluation2; + + private static final FilterResult PASS_VARIANT_FILTER_RESULT = FilterResult.pass(FilterType.FREQUENCY_FILTER); + private static final FilterResult FAIL_VARIANT_FILTER_RESULT = FilterResult.fail(FilterType.FREQUENCY_FILTER); + //there's nothing magical about a FilterResult being a Gene or Variant filter result, it's where/how they are used which makes the difference. + //their type is used for reporting which filter was passed or failed. + private static final FilterResult PASS_GENE_FILTER_RESULT = FilterResult.pass(FilterType.INHERITANCE_FILTER); + private static final FilterResult FAIL_GENE_FILTER_RESULT = FilterResult.fail(FilterType.INHERITANCE_FILTER); + + @Before + public void setUp() { + // variant1 is the first one in in FGFR2 gene + variantEvaluation1 = VariantEvaluation.builder(10, 123353320, "C", "G").build(); + // variant2 is the second one in in FGFR2 gene + variantEvaluation2 = VariantEvaluation.builder(10, 123353325, "T", "A").build(); + + instance = newGeneOne(); + } + + private Gene newGeneOne() { + return new Gene(GENE1_GENE_IDENTIFIER); + } + + private Gene newGeneTwo() { + GeneIdentifier geneIdentifier = GeneIdentifier.builder() + .geneSymbol("GENE2") + .geneId("654321") + .entrezId("654321") + .build(); + return new Gene(geneIdentifier); + } + + @Test + public void testConstructorWithGeneIdentifier() { + Gene gene = new Gene(GENE1_GENE_IDENTIFIER); + assertThat(gene.getGeneSymbol(), equalTo(GENE1_SYMBOL)); + assertThat(gene.getEntrezGeneID(), equalTo(GENE1_ENTREZ_GENE_ID)); + assertThat(gene.getGeneIdentifier(), equalTo(GENE1_GENE_IDENTIFIER)); + } + + @Test + public void testAlternateConstructor() { + Gene gene = new Gene(GENE1_SYMBOL, GENE1_ENTREZ_GENE_ID); + assertThat(gene.getGeneSymbol(), equalTo(GENE1_SYMBOL)); + assertThat(gene.getEntrezGeneID(), equalTo(GENE1_ENTREZ_GENE_ID)); + assertThat(gene.getGeneIdentifier(), equalTo(GENE1_GENE_IDENTIFIER)); + } + + @Test(expected = NullPointerException.class) + public void testConstructorChecksForNull() { + new Gene(null); + } + + @Test(expected = NullPointerException.class) + public void testConstructorChecksForNullGeneIdentifierGeneSymbol() { + new Gene(GeneIdentifier.builder().geneSymbol(null).entrezId(GENE1_GENE_ID).geneId(GENE1_GENE_ID).build()); + } + + @Test(expected = NullPointerException.class) + public void testConstructorChecksForNullGeneIdentifierGeneId() { + new Gene(GeneIdentifier.builder().geneSymbol(GENE1_SYMBOL).geneId(null).entrezId(GENE1_GENE_ID).build()); + } + + @Test(expected = NullPointerException.class) + public void testConstructorChecksForNullGeneIdentifierEntrezId() { + new Gene(GeneIdentifier.builder().geneSymbol(GENE1_SYMBOL).geneId(GENE1_GENE_ID).entrezId(null).build()); + } + + @Test(expected = IllegalArgumentException.class) + public void testConstructorChecksForEmptyGeneIdentifierGeneSymbol() { + new Gene(GeneIdentifier.builder().geneSymbol("").geneId(GENE1_GENE_ID).entrezId(GENE1_GENE_ID).build()); + } + + @Test + public void canGetGeneIdentifier() { + assertThat(instance.getGeneIdentifier(), equalTo(GENE1_GENE_IDENTIFIER)); + } + + @Test + public void canGetGeneId() { + assertThat(instance.getGeneId(), equalTo(String.valueOf(GENE1_ENTREZ_GENE_ID))); + } + + @Test + public void testConstructorSetsInstanceVariables() { + instance.addVariant(variantEvaluation1); + + List expectedVariantEvaluations = new ArrayList<>(); + expectedVariantEvaluations.add(variantEvaluation1); + + assertThat(instance.getGeneSymbol(), equalTo(GENE1_SYMBOL)); + assertThat(instance.getEntrezGeneID(), equalTo(GENE1_ENTREZ_GENE_ID)); + assertThat(instance.getVariantEvaluations(), equalTo(expectedVariantEvaluations)); + assertThat(instance.getNumberOfVariants(), equalTo(1)); + assertThat(instance.hasVariants(), is(true)); + + assertThat(instance.passedFilters(), is(true)); + assertThat(instance.getPriorityResults().isEmpty(), is(true)); + + assertThat(instance.getVariantScore(), equalTo(0f)); + assertThat(instance.getPriorityScore(), equalTo(0f)); + assertThat(instance.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testConstructorSetsInstanceVariablesNoVariant() { + Gene emptyGene = new Gene(GENE1_GENE_IDENTIFIER); + List expectedVariantEvaluations = new ArrayList<>(); + + assertThat(emptyGene.getGeneSymbol(), equalTo(GENE1_SYMBOL)); + assertThat(emptyGene.getEntrezGeneID(), equalTo(GENE1_ENTREZ_GENE_ID)); + assertThat(emptyGene.getVariantEvaluations(), equalTo(expectedVariantEvaluations)); + assertThat(emptyGene.getNumberOfVariants(), equalTo(0)); + assertThat(emptyGene.hasVariants(), is(false)); + + assertThat(emptyGene.passedFilters(), is(true)); + assertThat(emptyGene.getPriorityResults().isEmpty(), is(true)); + + assertThat(emptyGene.getVariantScore(), equalTo(0f)); + assertThat(emptyGene.getPriorityScore(), equalTo(0f)); + assertThat(emptyGene.getCombinedScore(), equalTo(0f)); + } + + @Test + public void testGenesWithDifferentGeneSymbolsAreComparedByGeneSymbolWhenScoresAreEqual() { + Gene gene1 = newGeneOne(); + Gene gene2 = newGeneTwo(); + + assertTrue(gene1.compareTo(gene2) < 0); + assertTrue(gene2.compareTo(gene1) > 0); + } + + @Test + public void testGenesWithDifferentGeneSymbolsAreComparedByCombinedScore() { + Gene gene1 = newGeneOne(); + Gene gene2 = newGeneTwo(); + + gene1.setCombinedScore(0.0f); + gene2.setCombinedScore(1.0f); + + assertTrue(gene1.compareTo(gene2) > 0); + assertTrue(gene2.compareTo(gene1) < 0); + } + + @Test + public void testGenesWithSameGeneSymbolsAreComparedByGeneSymbolWhenScoresAreEqual() { + Gene gene1 = newGeneOne(); + Gene gene2 = newGeneOne(); + + assertTrue(gene1.compareTo(gene2) == 0); + assertTrue(gene2.compareTo(gene1) == 0); + } + + @Test + public void testGenesWithSameGeneSymbolsAreComparedByCombinedScore() { + Gene gene1 = newGeneOne(); + Gene gene2 = newGeneOne(); + + gene1.setCombinedScore(0.0f); + gene2.setCombinedScore(1.0f); + + assertTrue(gene1.compareTo(gene2) > 0); + assertTrue(gene2.compareTo(gene1) < 0); + } + + @Test + public void testPassesFilters_TrueWhenNoFiltersHaveBeenApplied() { + assertThat(instance.passedFilters(), is(true)); + } + + @Test + public void testPassedFilters_TrueWhenPassesGeneFilterOnly() { + instance.addFilterResult(PASS_GENE_FILTER_RESULT); + assertThat(instance.passedFilters(), is(true)); + } + + @Test + public void testPassedFilters_FalseWhenFailsGeneFilterOnly() { + instance.addFilterResult(FAIL_GENE_FILTER_RESULT); + assertThat(instance.passedFilters(), is(false)); + } + + @Test + public void testPassedFilters_TrueWhenPassesGeneAndVariantFilters() { + instance.addFilterResult(PASS_GENE_FILTER_RESULT); + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.passedFilters(), is(true)); + } + + @Test + public void testPassedFilters_FalseWhenFailsGeneFilterButPassesVariantFilter() { + instance.addFilterResult(FAIL_GENE_FILTER_RESULT); + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.passedFilters(), is(false)); + } + + @Test + public void testPassedFilters_FalseWhenPassesGeneFilterButFailsVariantFilters() { + instance.addFilterResult(PASS_GENE_FILTER_RESULT); + variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.passedFilters(), is(false)); + } + + @Test + public void testPassedFilters_TrueWhenPassesGeneFilterAndAtLeastOneVariantFilter() { + instance.addFilterResult(PASS_GENE_FILTER_RESULT); + variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + variantEvaluation2.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation2); + assertThat(instance.passedFilters(), is(true)); + } +//TODO: behaviour under consideration - better in the gene or the gene filter runner? Should it apply to all gene filters? +// @Test +// public void testAddingFilterResultToGeneAppliesThatResultToAllVariantsOfTheGene() { +// //set-up gene +// variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); +// instance.addVariant(variantEvaluation1); +// //simluate filtering +// instance.addFilterResult(PASS_GENE_FILTER_RESULT); +// +// //test the variant still fails the original filter +// assertThat(variantEvaluation1.passedFilter(FAIL_VARIANT_FILTER_RESULT.getFilterType()), is(false)); +// //but that the variant also passes the gene filter - this is OK behaviour as Variants fail fast - i.e. we really only care if a variant passed ALL filters +// assertThat(variantEvaluation1.passedFilter(PASS_GENE_FILTER_RESULT.getFilterType()), is(true)); +// } + + @Test + public void testPassedFilter_TrueWhenGenePassesAndVariantsFailFilterOfThatType() { + instance.addFilterResult(PASS_GENE_FILTER_RESULT); + variantEvaluation1.addFilterResult(FAIL_GENE_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.passedFilter(PASS_GENE_FILTER_RESULT.getFilterType()), is(true)); + } + + @Test + public void testPassedFilter_TrueWhenGeneUnfilteredAndVariantPassesFilterOfThatType() { + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.passedFilter(PASS_VARIANT_FILTER_RESULT.getFilterType()), is(true)); + } + + @Test + public void testPassedFilter_FalseWhenGeneUnfilteredAndVariantsFailFilterOfThatType() { + variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.passedFilter(FAIL_VARIANT_FILTER_RESULT.getFilterType()), is(false)); + } + + @Test + public void testPassedFilter_TrueWhenGeneUnfilteredAndAtLeastOneVariantPassesFilterOfThatType() { + variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + variantEvaluation2.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation2); + assertThat(instance.passedFilter(PASS_VARIANT_FILTER_RESULT.getFilterType()), is(true)); + } + + @Test + public void testPassesFilters_TrueWhenVariantPassesFilter() { + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.passedFilters(), is(true)); + } + + @Test + public void testPassesFilters_TrueWhenAtLeastOneVariantPassesFilter() { + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + + variantEvaluation2.addFilterResult(FAIL_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation2); + + assertThat(instance.passedFilters(), is(true)); + } + + @Test + public void testPassesFilters_FalseWhenVariantFailsFilter() { + variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.passedFilters(), is(false)); + } + + @Test + public void testGetPassedVariantEvaluationsIsEmptyWhenVariantFailsFilter() { + variantEvaluation1.addFilterResult(FAIL_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + assertThat(instance.getPassedVariantEvaluations().isEmpty(), is(true)); + } + + @Test + public void testGetPassedVariantEvaluations() { + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation1); + + variantEvaluation2.addFilterResult(FAIL_VARIANT_FILTER_RESULT); + instance.addVariant(variantEvaluation2); + + List passedVariantEvaluations = Arrays.asList(variantEvaluation1); + + assertThat(instance.getPassedVariantEvaluations(), equalTo(passedVariantEvaluations)); + } + + @Test + public void testAddVariant_AfterGeneIsFilteredAppliesPassGeneFilterResultsToVariant() { + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addFilterResult(FilterResult.pass(FilterType.PRIORITY_SCORE_FILTER)); + + instance.addVariant(variantEvaluation1); + + assertThat(variantEvaluation1.passedFilters(), is(true)); + assertThat(variantEvaluation1.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(true)); + } + + @Test + public void testAddVariant_AfterGeneIsFilteredAppliesFailGeneFilterResultsToVariant() { + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + instance.addFilterResult(FilterResult.fail(FilterType.PRIORITY_SCORE_FILTER)); + + instance.addVariant(variantEvaluation1); + + assertThat(variantEvaluation1.passedFilters(), is(false)); + assertThat(variantEvaluation1.passedFilter(PASS_VARIANT_FILTER_RESULT.getFilterType()), is(true)); + assertThat(variantEvaluation1.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(false)); + } + + @Test + public void testAddVariant_AfterGeneIsFilteredDoesNotApplyInheritanceFilterResultToVariant() { + variantEvaluation1.addFilterResult(PASS_VARIANT_FILTER_RESULT); + + instance.addFilterResult(FilterResult.pass(FilterType.PRIORITY_SCORE_FILTER)); + instance.addFilterResult(FilterResult.fail(FilterType.INHERITANCE_FILTER)); + + instance.addVariant(variantEvaluation1); + + assertThat(variantEvaluation1.passedFilters(), is(true)); + assertThat(variantEvaluation1.passedFilter(FilterType.PRIORITY_SCORE_FILTER), is(true)); + assertThat(variantEvaluation1.getFailedFilterTypes().contains(FilterType.INHERITANCE_FILTER), is(false)); + } + + @Test + public void testCanAddAndRetrievePriorityScoreByPriorityType() { + PriorityType priorityType = PriorityType.OMIM_PRIORITY; + PriorityResult omimPriorityResult = new MockPriorityResult(priorityType, instance.getEntrezGeneID(), instance.getGeneSymbol(), 0f); + + instance.addPriorityResult(omimPriorityResult); + instance.addPriorityResult(new ExomeWalkerPriorityResult(instance.getEntrezGeneID(), instance.getGeneSymbol(), 0.0d)); + assertThat(instance.getPriorityResult(priorityType), equalTo(omimPriorityResult)); + } + + @Test + public void canInheritanceModes() { + assertThat(instance.getInheritanceModes(), notNullValue()); + assertThat(instance.getInheritanceModes().isEmpty(), is(true)); + } + + @Test + public void canSetAndGetInheritanceModes() { + Set inheritanceModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT, ModeOfInheritance.X_DOMINANT); + + instance.setInheritanceModes(inheritanceModes); + + assertThat(instance.getInheritanceModes(), equalTo(inheritanceModes)); + } + + @Test + public void isConsistentWithInheritanceModes() { + Set inheritanceModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT, ModeOfInheritance.AUTOSOMAL_RECESSIVE, + ModeOfInheritance.X_RECESSIVE); + + instance.setInheritanceModes(inheritanceModes); + + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.X_RECESSIVE), is(true)); + assertThat(instance.isCompatibleWithDominant(), is(true)); + assertThat(instance.isCompatibleWithRecessive(), is(true)); + assertThat(instance.isConsistentWithX(), is(true)); + } + + @Test + public void isConsistentWithDominantInheritanceModes() { + Set inheritanceModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT); + + instance.setInheritanceModes(inheritanceModes); + + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.X_RECESSIVE), is(false)); + assertThat(instance.isCompatibleWithDominant(), is(true)); + assertThat(instance.isCompatibleWithRecessive(), is(false)); + assertThat(instance.isConsistentWithX(), is(false)); + } + + @Test + public void isConsistentWithRecessiveInheritanceModes() { + Set inheritanceModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_RECESSIVE); + + instance.setInheritanceModes(inheritanceModes); + + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.X_RECESSIVE), is(false)); + assertThat(instance.isCompatibleWithDominant(), is(false)); + assertThat(instance.isCompatibleWithRecessive(), is(true)); + assertThat(instance.isConsistentWithX(), is(false)); + } + + @Test + public void isConsistentWithXRecessiveInheritanceModes() { + Set inheritanceModes = EnumSet.of(ModeOfInheritance.X_RECESSIVE); + + instance.setInheritanceModes(inheritanceModes); + + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(false)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(false)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.X_RECESSIVE), is(true)); + assertThat(instance.isCompatibleWithDominant(), is(false)); + assertThat(instance.isCompatibleWithRecessive(), is(false)); + assertThat(instance.isConsistentWithX(), is(true)); + } + + @Test + public void testIsCompatibleWithX_falseWhenVariantsIsEmpty() { + instance = newGeneOne(); + assertThat(instance.isXChromosomal(), is(false)); + } + + @Test + public void testIsCompatibleWithX_falseWhenVariantIsNotCompatibleWithX() { + instance = newGeneOne(); + instance.addVariant(VariantEvaluation.builder(1, 1, "A", "T").build()); + assertThat(instance.isXChromosomal(), is(false)); + } + + @Test + public void testIsCompatibleWithX_trueWhenVariantIsCompatibleWithX() { + int X_CHROMOSOME = 23; + instance = newGeneOne(); + instance.addVariant(VariantEvaluation.builder(X_CHROMOSOME, 1, "A", "T").build()); + assertThat(instance.isXChromosomal(), is(true)); + } + + @Test + public void testIsCompatibleWithY_falseWhenVariantsIsEmpty() { + instance = newGeneOne(); + assertThat(instance.isYChromosomal(), is(false)); + } + + @Test + public void testIsCompatibleWithY_falseWhenVariantIsNotCompatibleWithX() { + instance = newGeneOne(); + instance.addVariant(VariantEvaluation.builder(1, 1, "A", "T").build()); + assertThat(instance.isYChromosomal(), is(false)); + } + + @Test + public void testIsCompatibleWithY_trueWhenVariantIsCompatibleWithX() { + int Y_CHROMOSOME = 24; + instance = newGeneOne(); + instance.addVariant(VariantEvaluation.builder(Y_CHROMOSOME, 1, "A", "T").build()); + assertThat(instance.isYChromosomal(), is(true)); + } + + @Test + public void testCanSetAndChangePriorityScore() { + float firstScore = 0f; + instance.setPriorityScore(firstScore); + assertThat(instance.getPriorityScore(), equalTo(firstScore)); + + float secondScore = 1.0f; + instance.setPriorityScore(secondScore); + assertThat(instance.getPriorityScore(), equalTo(secondScore)); + } + + @Test + public void testCanSetAndChangeVariantScore() { + float firstScore = 0f; + instance.setVariantScore(firstScore); + assertThat(instance.getVariantScore(), equalTo(firstScore)); + + float secondScore = 1.0f; + instance.setVariantScore(secondScore); + assertThat(instance.getVariantScore(), equalTo(secondScore)); + } + + @Test + public void testToString() { + System.out.println(instance); + } +} diff --git a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneticIntervalTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneticIntervalTest.java similarity index 84% rename from exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneticIntervalTest.java rename to exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneticIntervalTest.java index 0b9cc61f8..a4788ed69 100644 --- a/exomiser-core/src/test/java/de/charite/compbio/exomiser/core/model/GeneticIntervalTest.java +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/GeneticIntervalTest.java @@ -1,38 +1,58 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.core.model; - -import static org.hamcrest.CoreMatchers.equalTo; -import static org.hamcrest.CoreMatchers.is; -import static org.junit.Assert.*; +package org.monarchinitiative.exomiser.core.model; +import de.charite.compbio.jannovar.data.ReferenceDictionary; +import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; import org.junit.Before; import org.junit.Test; -import de.charite.compbio.jannovar.data.ReferenceDictionary; -import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertThat; /** * * @author Jules Jacobsen */ public class GeneticIntervalTest { - + GeneticInterval instance; - + private final int CHR = 2; private final int START = 123; private final int END = 456; - + ReferenceDictionary refDict; public GeneticIntervalTest() { } - + @Before public void setUp() { instance = new GeneticInterval(CHR, START, END); @@ -44,93 +64,93 @@ public void testParseStringNumericChromosomeSingleDigit() { String interval = "chr3:123-456"; GeneticInterval expResult = new GeneticInterval(3, 123, 456); GeneticInterval result = GeneticInterval.parseString(refDict, interval); - + assertThat(result, equalTo(expResult)); - + } - + @Test public void testParseStringNumericChromosomeDoubleDigit() { String interval = "chr14:123-456"; GeneticInterval expResult = new GeneticInterval(14, 123, 456); GeneticInterval result = GeneticInterval.parseString(refDict, interval); - + assertThat(result, equalTo(expResult)); } - + @Test public void testParseStringChromosomeX() { String interval = "chrX:123-456"; GeneticInterval expResult = new GeneticInterval(23, 123, 456); GeneticInterval result = GeneticInterval.parseString(refDict, interval); - + assertThat(result, equalTo(expResult)); - + } - + @Test public void testParseStringChromosomeY() { String interval = "chrY:123-456"; GeneticInterval expResult = new GeneticInterval(24, 123, 456); GeneticInterval result = GeneticInterval.parseString(refDict, interval); - + assertThat(result, equalTo(expResult)); - + } - + @Test public void testParseStringChromosomeM() { String interval = "chrM:123-456"; GeneticInterval expResult = new GeneticInterval(25, 123, 456); GeneticInterval result = GeneticInterval.parseString(refDict, interval); - + assertThat(result, equalTo(expResult)); - + } - + @Test(expected = IllegalArgumentException.class) public void testParseStringThrowsErrorOnMissingChromosomePrefix() { String interval = "3:123-456"; GeneticInterval.parseString(refDict, interval); } - + @Test(expected = IllegalArgumentException.class) public void testParseStringThrowsErrorOnIncorrectChromosomeNumber() { String interval = "chr33:123-456"; GeneticInterval.parseString(refDict, interval); } - + @Test(expected = IllegalArgumentException.class) public void testParseStringThrowsErrorOnAnotherIncorrectChromosomeNumber() { String interval = "chr666:123-456"; GeneticInterval.parseString(refDict, interval); } - + @Test(expected = IllegalArgumentException.class) public void testParseStringThrowsErrorOnUndefinedStart() { String interval = "chr6:-456"; GeneticInterval.parseString(refDict, interval); } - + @Test(expected = IllegalArgumentException.class) public void testParseStringThrowsErrorOnUndefinedEnd() { String interval = "chr6:123-"; GeneticInterval.parseString(refDict, interval); } - + @Test(expected = IllegalArgumentException.class) public void testParseStringThrowsErrorWithIncorrectPositionDelimiter() { String interval = "chr6:123:456"; GeneticInterval.parseString(refDict, interval); } - - + + @Test(expected = IllegalArgumentException.class) public void testParseStringThrowsErrorWithSwitchedPositions() { String interval = "chr6:456:123"; GeneticInterval.parseString(refDict, interval); } - + @Test(expected = IllegalArgumentException.class) public void testConstructorThrowsErrorWhenEndDefinedBeforeStart() { GeneticInterval interval = new GeneticInterval(CHR, END, START); @@ -163,30 +183,30 @@ public void testEquals() { GeneticInterval other = new GeneticInterval(CHR, START, END); assertThat(instance.equals(other), is(true)); } - + @Test public void testObjectNotEquals() { String other = "wibble"; assertThat(instance.equals(other), is(false)); } - + @Test public void testNullNotEquals() { assertThat(instance.equals(null), is(false)); } - + @Test public void testChrNotEquals() { GeneticInterval other = new GeneticInterval((byte) 4, START, END); assertThat(instance.equals(other), is(false)); } - + @Test public void testStartNotEquals() { GeneticInterval other = new GeneticInterval(CHR, 345, END); assertThat(instance.equals(other), is(false)); } - + @Test public void testEndNotEquals() { GeneticInterval other = new GeneticInterval(CHR, START, 124); @@ -197,5 +217,5 @@ public void testEndNotEquals() { public void testToString() { assertThat(instance.toString(), equalTo("chr2:123-456")); } - + } diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/RegulatoryFeatureTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/RegulatoryFeatureTest.java new file mode 100644 index 000000000..d4734cc97 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/RegulatoryFeatureTest.java @@ -0,0 +1,77 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class RegulatoryFeatureTest { + + private RegulatoryFeature instance; + + @Before + public void setUp() { + //do we want types or polymorphism? Start with type as this is pretty much just a DTO at the moment? + int chr = 1; + int start = 10; + int end = 100; + RegulatoryFeature.FeatureType featureType = RegulatoryFeature.FeatureType.ENHANCER; + instance = new RegulatoryFeature(chr, start, end, featureType); + } + + @Test + public void getChromosome() { + assertThat(instance.getChromosome(), equalTo(1)); + } + + @Test + public void getStart() { + assertThat(instance.getStart(), equalTo(10)); + } + + @Test + public void getEnd() { + assertThat(instance.getEnd(), equalTo(100)); + } + + @Test + public void testGetFeatureType() { + assertThat(instance.getFeatureType(), equalTo(RegulatoryFeature.FeatureType.ENHANCER)); + } + + @Test + public void testGetVariantEffect() { + assertThat(instance.getVariantEffect(), equalTo(VariantEffect.REGULATORY_REGION_VARIANT)); + } + + @Test + public void testToString() { + System.out.println(instance); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/SimpleVariantCoordinates.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/SimpleVariantCoordinates.java new file mode 100644 index 000000000..2eec4ef01 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/SimpleVariantCoordinates.java @@ -0,0 +1,106 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +/** + * @author Jules Jacobsen + */ +public class SimpleVariantCoordinates implements VariantCoordinates { + + private final int chr; + private final int pos; + private final String ref; + private final String alt; + + public SimpleVariantCoordinates(int chr, int pos, String ref, String alt) { + this.chr = chr; + this.pos = pos; + this.ref = ref; + this.alt = alt; + } + + @Override + public int getChromosome() { + return chr; + } + + @Override + public String getChromosomeName() { + switch (chr) { + case 23: + return "X"; + case 24: + return "Y"; + case 25: + return "M"; + default: + return String.valueOf(chr); + } + } + + @Override + public int getPosition() { + return pos; + } + + @Override + public String getRef() { + return ref; + } + + @Override + public String getAlt() { + return alt; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + + SimpleVariantCoordinates that = (SimpleVariantCoordinates) o; + + if (chr != that.chr) return false; + if (pos != that.pos) return false; + if (ref != null ? !ref.equals(that.ref) : that.ref != null) return false; + return !(alt != null ? !alt.equals(that.alt) : that.alt != null); + + } + + @Override + public int hashCode() { + int result = chr; + result = 31 * result + pos; + result = 31 * result + (ref != null ? ref.hashCode() : 0); + result = 31 * result + (alt != null ? alt.hashCode() : 0); + return result; + } + + @Override + public String toString() { + return "SimpleVariantCoordinates{" + + "chr=" + chr + + ", pos=" + pos + + ", ref='" + ref + '\'' + + ", alt='" + alt + '\'' + + '}'; + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/TopologicalDomainTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/TopologicalDomainTest.java new file mode 100644 index 000000000..f7d2462d4 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/TopologicalDomainTest.java @@ -0,0 +1,89 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import org.junit.Test; + +import java.util.HashMap; +import java.util.Map; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; +import static org.hamcrest.core.Is.is; + +/** + * @author Jules Jacobsen + */ +public class TopologicalDomainTest { + + private TopologicalDomain instance; + + @Test + public void testGetChromosome() { + instance = new TopologicalDomain(1, 0, 0, new HashMap<>()); + assertThat(instance.getChromosome(), equalTo(1)); + } + + @Test + public void testGetStart() { + instance = new TopologicalDomain(0, 1, 0, new HashMap<>()); + assertThat(instance.getStart(), equalTo(1)); + } + + @Test + public void testGetEnd() { + instance = new TopologicalDomain(0, 0, 1, new HashMap<>()); + assertThat(instance.getEnd(), equalTo(1)); + } + + @Test + public void testGetGenes() { + Map genes = new HashMap<>(); + genes.put("GENE1", 12345); + genes.put("GENE2", 23456); + instance = new TopologicalDomain(0, 0, 0, genes); + assertThat(instance.getGenes(), equalTo(genes)); + } + + @Test + public void testVariantIsWithinDomain() { + VariantCoordinates variant = new SimpleVariantCoordinates(1, 5, "A", "T"); + instance = new TopologicalDomain(1, 1, 10, new HashMap<>()); + assertThat(instance.containsPosition(variant), is(true)); + } + + @Test + public void testVariantIsOutsideDomain() { + VariantCoordinates variant = new SimpleVariantCoordinates(1, 5, "A", "T"); + instance = new TopologicalDomain(1, 1000, 10000, new HashMap<>()); + assertThat(instance.containsPosition(variant), is(false)); + } + + @Test + public void testToString() { + Map genes = new HashMap<>(); + genes.put("GENE1", 12345); + genes.put("GENE2", 23456); + instance = new TopologicalDomain(1, 987, 123456, genes); + System.out.println(instance); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/TranscriptAnnotationTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/TranscriptAnnotationTest.java new file mode 100644 index 000000000..a386bce0f --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/TranscriptAnnotationTest.java @@ -0,0 +1,120 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class TranscriptAnnotationTest { + + @Test + public void testEmpty() { + assertThat(TranscriptAnnotation.empty(), equalTo(TranscriptAnnotation.builder().build())); + } + + @Test + public void testVariantEffect() { + VariantEffect value = VariantEffect.MISSENSE_VARIANT; + TranscriptAnnotation annotation = TranscriptAnnotation.builder() + .variantEffect(value) + .build(); + assertThat(annotation.getVariantEffect(), equalTo(value)); + } + + @Test + public void testGeneSymbol() { + String value = "FGFR2"; + TranscriptAnnotation annotation = TranscriptAnnotation.builder() + .geneSymbol(value) + .build(); + assertThat(annotation.getGeneSymbol(), equalTo(value)); + } + + @Test + public void testTranscriptAccession() { + String value = "uc021pzz.1"; + TranscriptAnnotation annotation = TranscriptAnnotation.builder() + .accession(value) + .build(); + assertThat(annotation.getAccession(), equalTo(value)); + } + + @Test + public void testHgvsGeString() { + String value = "chr10:g.123256215T>G"; + TranscriptAnnotation annotation = TranscriptAnnotation.builder() + .hgvsGenomic(value) + .build(); + assertThat(annotation.getHgvsGenomic(), equalTo(value)); + } + + @Test + public void testHgvsCdsString() { + String value = "c.1694A>C"; + TranscriptAnnotation annotation = TranscriptAnnotation.builder() + .hgvsCdna(value) + .build(); + assertThat(annotation.getHgvsCdna(), equalTo(value)); + } + + @Test + public void testHgvsProteinString() { + String value = "p.(Glu565Ala)"; + TranscriptAnnotation annotation = TranscriptAnnotation.builder() + .hgvsProtein(value) + .build(); + assertThat(annotation.getHgvsProtein(), equalTo(value)); + } + + @Test + public void testDistanceFromNearestGene() { + int value = 0; + TranscriptAnnotation annotation = TranscriptAnnotation.builder() + .distanceFromNearestGene(value) + .build(); + assertThat(annotation.getDistanceFromNearestGene(), equalTo(value)); + } + + @Test + public void testToString() { + System.out.println(TranscriptAnnotation.builder().build()); + + TranscriptAnnotation annotation = TranscriptAnnotation.builder() + .geneSymbol("FGFR") + .accession("uc021pzz.1") + .hgvsGenomic("chr10:g.123256215T>G") + .hgvsCdna("c.1694A>C") + .hgvsProtein("p.(Glu565Ala)") + .distanceFromNearestGene(0) + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .build(); + + System.out.println(annotation); + } + + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantEvaluationTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantEvaluationTest.java new file mode 100644 index 000000000..b974dc498 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantEvaluationTest.java @@ -0,0 +1,678 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import de.charite.compbio.jannovar.pedigree.Genotype; +import htsjdk.variant.variantcontext.VariantContext; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; +import org.monarchinitiative.exomiser.core.model.pathogenicity.*; + +import java.util.*; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * Tests for non-bean (i.e. logic-containing) methods in + * {@code VariantEvaluation} class + * + * @author Jules Jacobsen + */ +public class VariantEvaluationTest { + + private VariantEvaluation instance; + + private static final int CHROMOSOME = 1; + private static final String CHROMOSOME_NAME = "1"; + private static final int POSITION = 1; + private static final String REF = "C"; + private static final String ALT = "T"; + + private static final double QUALITY = 2.2; + private static final int READ_DEPTH = 6; + private static final Genotype HETEROZYGOUS = Genotype.HETEROZYGOUS; + private static final String GENE1_GENE_SYMBOL = "GENE1"; + private static final int GENE1_ENTREZ_GENE_ID = 1234567; + + private static final String GENE2_GENE_SYMBOL = "GENE2"; + private static final int GENE2_ENTREZ_GENE_ID = 7654321; + + private static final FilterResult FAIL_FREQUENCY_RESULT = FilterResult.fail(FilterType.FREQUENCY_FILTER); + private static final FilterResult PASS_FREQUENCY_RESULT = FilterResult.pass(FilterType.FREQUENCY_FILTER); + + private static final FilterResult PASS_QUALITY_RESULT = FilterResult.pass(FilterType.QUALITY_FILTER); + + + private static final float SIFT_PASS_SCORE = SiftScore.SIFT_THRESHOLD - 0.01f; + private static final float SIFT_FAIL_SCORE = SiftScore.SIFT_THRESHOLD + 0.01f; + + private static final SiftScore SIFT_PASS = SiftScore.valueOf(SIFT_PASS_SCORE); + private static final SiftScore SIFT_FAIL = SiftScore.valueOf(SIFT_FAIL_SCORE); + + private static final float POLYPHEN_PASS_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f; + private static final float POLYPHEN_FAIL_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD - 0.1f; + + private static final PolyPhenScore POLYPHEN_PASS = PolyPhenScore.valueOf(POLYPHEN_PASS_SCORE); + private static final PolyPhenScore POLYPHEN_FAIL = PolyPhenScore.valueOf(POLYPHEN_FAIL_SCORE); + + private static final float MTASTER_PASS_SCORE = MutationTasterScore.MTASTER_THRESHOLD + 0.01f; + private static final float MTASTER_FAIL_SCORE = MutationTasterScore.MTASTER_THRESHOLD - 0.01f; + + private static final MutationTasterScore MTASTER_PASS = MutationTasterScore.valueOf(MTASTER_PASS_SCORE); + private static final MutationTasterScore MTASTER_FAIL = MutationTasterScore.valueOf(MTASTER_FAIL_SCORE); + + @Before + public void setUp() { + instance = VariantEvaluation.builder(CHROMOSOME, POSITION, REF, ALT) + .quality(QUALITY) + .geneSymbol(GENE1_GENE_SYMBOL) + .geneId(GENE1_ENTREZ_GENE_ID) + .build(); + } + + private static VariantEvaluation.Builder testVariantBuilder() { + return VariantEvaluation.builder(CHROMOSOME, POSITION, REF, ALT); + } + + @Test + public void testGetChromosome() { + assertThat(instance.getChromosome(), equalTo(CHROMOSOME)); + } + + @Test + public void testGetChromosomeName() { + assertThat(instance.getChromosomeName(), equalTo(CHROMOSOME_NAME)); + } + + @Test + public void testGetChromosomePosition() { + assertThat(instance.getPosition(), equalTo(POSITION)); + } + + @Test + public void testGetRef() { + assertThat(instance.getRef(), equalTo(REF)); + } + + @Test + public void testGetAlt() { + assertThat(instance.getAlt(), equalTo(ALT)); + + } + + @Test + public void testGetGeneSymbol() { + assertThat(instance.getGeneSymbol(), equalTo(GENE1_GENE_SYMBOL)); + } + + @Test + public void testGetGeneSymbolReturnsOnlyFirstGeneSymbol() { + instance = testVariantBuilder() + .geneSymbol(GENE2_GENE_SYMBOL + "," + GENE1_GENE_SYMBOL) + .build(); + assertThat(instance.getGeneSymbol(), equalTo(GENE2_GENE_SYMBOL)); + } + + @Test + public void testGetGeneSymbolReturnsADotIfGeneSymbolNotDefined() { + instance = testVariantBuilder().build(); + assertThat(instance.getGeneSymbol(), equalTo(".")); + } + + @Test + public void testGetNumIndividuals_EqualsOneIfNotSet() { + assertThat(instance.getNumberOfIndividuals(), equalTo(1)); + } + + @Test + public void testGetNumIndividuals_EqualsBuilderValue() { + int builderValue = 2; + instance = testVariantBuilder().numIndividuals(builderValue).build(); + assertThat(instance.getNumberOfIndividuals(), equalTo(builderValue)); + } + + @Test + public void canGetEntrezGeneID() { + assertThat(instance.getEntrezGeneId(), equalTo(GENE1_ENTREZ_GENE_ID)); + } + + @Test + public void testThatTheConstructorCreatesAnEmptyFrequencyDataObject() { + FrequencyData frequencyData = instance.getFrequencyData(); + assertThat(frequencyData, equalTo(FrequencyData.empty())); + } + + @Test + public void testThatTheBuilderCanSetAFrequencyDataObject() { + FrequencyData frequencyData = FrequencyData.of(RsId.valueOf(12345), Frequency.valueOf(0.1f, FrequencySource.LOCAL)); + instance = testVariantBuilder().frequencyData(frequencyData).build(); + assertThat(instance.getFrequencyData(), equalTo(frequencyData)); + } + + @Test + public void testCanSetFrequencyDataAfterConstruction() { + FrequencyData frequencyData = FrequencyData.of(RsId.valueOf(12345), Frequency.valueOf(0.1f, FrequencySource.LOCAL)); + instance.setFrequencyData(frequencyData); + assertThat(instance.getFrequencyData(), equalTo(frequencyData)); + } + + @Test + public void testGetFrequencyScoreNoFrequencyDataSet() { + assertThat(instance.getFrequencyScore(), equalTo(1f)); + } + + @Test + public void testThatTheConstructorCreatesAnEmptyPathogenicityDataObject() { + PathogenicityData pathogenicityData = instance.getPathogenicityData(); + assertThat(pathogenicityData, equalTo(PathogenicityData.empty())); + assertThat(pathogenicityData.getMutationTasterScore(), nullValue()); + assertThat(pathogenicityData.getPolyPhenScore(), nullValue()); + assertThat(pathogenicityData.getSiftScore(), nullValue()); + assertThat(pathogenicityData.getCaddScore(), nullValue()); + assertThat(pathogenicityData.hasPredictedScore(), is(false)); + } + + @Test + public void testThatTheBuilderCanSetAPathogenicityDataObject() { + PathogenicityData pathData = PathogenicityData.of(PolyPhenScore.valueOf(1.0f)); + instance = testVariantBuilder().pathogenicityData(pathData).build(); + assertThat(instance.getPathogenicityData(), equalTo(pathData)); + } + + @Test + public void testCanSetPathogenicityDataAfterConstruction() { + PathogenicityData pathData = PathogenicityData.of(PolyPhenScore.valueOf(1.0f)); + instance.setPathogenicityData(pathData); + assertThat(instance.getPathogenicityData(), equalTo(pathData)); + } + + @Test + public void testGetPathogenicityScore_UnknownVariantEffectNoPathogenicityPredictions() { + assertThat(instance.getVariantEffect(), equalTo(VariantEffect.SEQUENCE_VARIANT)); + assertThat(instance.getPathogenicityScore(), equalTo(0f)); + } + + @Test + public void testGetPathogenicityScore_NonMissenseVariantNoPredictions() { + VariantEffect type = VariantEffect.DOWNSTREAM_GENE_VARIANT; + instance = testVariantBuilder().variantEffect(type).build(); + + float expected = VariantTypePathogenicityScores.getPathogenicityScoreOf(type); + assertThat(instance.getPathogenicityScore(), equalTo(expected)); + } + + @Test + public void testGetPathogenicityScore_NonMissenseVariantWithPredictions() { + VariantEffect type = VariantEffect.REGULATORY_REGION_VARIANT; + PathogenicityData pathData = PathogenicityData.of(CaddScore.valueOf(1f)); + instance = testVariantBuilder().pathogenicityData(pathData).variantEffect(type).build(); + + assertThat(instance.getPathogenicityScore(), equalTo(pathData.getScore())); + } + + @Test + public void testGetPathogenicityScore_MissenseVariantNoPredictions() { + VariantEffect type = VariantEffect.MISSENSE_VARIANT; + instance = testVariantBuilder().variantEffect(type).build(); + + float expected = VariantTypePathogenicityScores.getPathogenicityScoreOf(type); + assertThat(instance.getPathogenicityScore(), equalTo(expected)); + } + + @Test + public void testGetPathogenicityScore_MissenseSiftPass() { + PathogenicityData pathData = PathogenicityData.of(POLYPHEN_FAIL, MTASTER_FAIL, SIFT_PASS); + VariantEffect type = VariantEffect.MISSENSE_VARIANT; + instance = testVariantBuilder().pathogenicityData(pathData).variantEffect(type).build(); + + float expected = 1 - SIFT_PASS.getScore(); + assertThat(instance.getPathogenicityScore(), equalTo(expected)); + } + + @Test + public void testGetPathogenicityScore_MissensePolyPhenAndSiftPass() { + PathogenicityData pathData = PathogenicityData.of(POLYPHEN_PASS, MTASTER_FAIL, SIFT_PASS); + VariantEffect type = VariantEffect.MISSENSE_VARIANT; + instance = testVariantBuilder().pathogenicityData(pathData).variantEffect(type).build(); + + float expected = 1 - SIFT_PASS.getScore(); + assertThat(instance.getPathogenicityScore(), equalTo(expected)); + } + + @Test + public void testGetPathogenicityScore_MissensePolyPhenSiftAndMutTasterPass() { + PathogenicityData pathData = PathogenicityData.of(POLYPHEN_PASS, MTASTER_PASS, SIFT_PASS); + VariantEffect type = VariantEffect.MISSENSE_VARIANT; + instance = testVariantBuilder().pathogenicityData(pathData).variantEffect(type).build(); + + float expected = MTASTER_PASS.getScore(); + assertThat(instance.getPathogenicityScore(), equalTo(expected)); + } + + @Test + public void testGetFailedFilterTypes() { + Set expectedFilters = EnumSet.of(FAIL_FREQUENCY_RESULT.getFilterType()); + + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + assertThat(instance.getFailedFilterTypes(), equalTo(expectedFilters)); + } + + @Test + public void testGetFailedFilterTypesDontContainPassedFilterTypes() { + Set expectedFilters = EnumSet.of(FAIL_FREQUENCY_RESULT.getFilterType()); + + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + instance.addFilterResult(PASS_QUALITY_RESULT); + + assertThat(instance.getFailedFilterTypes(), equalTo(expectedFilters)); + } + + @Test + public void testBuilderFilterResultsGetFailedFilterTypesDontContainPassedFilterTypes() { + Set expectedFilters = EnumSet.of(FAIL_FREQUENCY_RESULT.getFilterType()); + VariantEvaluation variantEvaluation = testVariantBuilder() + .filterResults(FAIL_FREQUENCY_RESULT) + .build(); + + assertThat(variantEvaluation.getFailedFilterTypes(), equalTo(expectedFilters)); + } + + @Test + public void testBuilderFilterResults_AddPassAndFailedFilters() { + Set expectedFilters = EnumSet.of(FAIL_FREQUENCY_RESULT.getFilterType()); + Set passedFilters = EnumSet.of(PASS_QUALITY_RESULT.getFilterType()); + + VariantEvaluation variantEvaluation = testVariantBuilder() + .filterResults(FAIL_FREQUENCY_RESULT, PASS_QUALITY_RESULT) + .build(); + + assertThat(variantEvaluation.getFailedFilterTypes(), equalTo(expectedFilters)); + assertThat(variantEvaluation.getPassedFilterTypes(), equalTo(passedFilters)); + } + + @Test + public void testGetVariantScoreWithEmptyFreqAndPathData() { + instance = testVariantBuilder() + .frequencyData(FrequencyData.empty()) + .pathogenicityData(PathogenicityData.empty()) + .build(); + assertThat(instance.getVariantScore(), equalTo(0f)); + } + + @Test + public void testVariantScoreIsIndependentOfFilterStatus() { + instance = testVariantBuilder() + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .frequencyData(FrequencyData.empty()) + //PolyPhen of 1 is predicted as highly pathogenic + .pathogenicityData(PathogenicityData.of(PolyPhenScore.valueOf(1f))) + .build(); + assertThat(instance.getVariantScore(), equalTo(1f)); + assertThat(instance.passedFilters(), is(true)); + + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + + assertThat(instance.getVariantScore(), equalTo(1f)); + assertThat(instance.passedFilters(), is(false)); + } + + @Test + public void testPassesFiltersWhenNoFiltersHaveBeenApplied() { + assertThat(instance.getFailedFilterTypes().isEmpty(), is(true)); + assertThat(instance.getPassedFilterTypes().isEmpty(), is(true)); + assertThat(instance.passedFilters(), is(true)); + } + + @Test + public void testFailsFiltersWhenFailedFilterResultAdded() { + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + assertThat(instance.passedFilters(), is(false)); + } + + @Test + public void testPassesFiltersWhenOnlyPassedFiltersHaveBeenApplied() { + instance.addFilterResult(PASS_QUALITY_RESULT); + instance.addFilterResult(PASS_FREQUENCY_RESULT); + assertThat(instance.getFailedFilterTypes().isEmpty(), is(true)); + assertThat(instance.getPassedFilterTypes().isEmpty(), is(false)); + assertThat(instance.passedFilters(), is(true)); + } + + @Test + public void testFailsFiltersWhenPassedAndFailedFiltersHaveBeenApplied() { + instance.addFilterResult(PASS_QUALITY_RESULT); + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + assertThat(instance.getFailedFilterTypes().isEmpty(), is(false)); + assertThat(instance.getPassedFilterTypes().isEmpty(), is(false)); + assertThat(instance.passedFilters(), is(false)); + } + + @Test + public void testFilterStatusWhenNoFiltersHaveBeenApplied() { + assertThat(instance.getFilterStatus(), equalTo(FilterStatus.UNFILTERED)); + } + + @Test + public void testFilterStatusWhenFiltersHaveBeenAppliedAndPassed() { + instance.addFilterResult(PASS_QUALITY_RESULT); + assertThat(instance.getFilterStatus(), equalTo(FilterStatus.PASSED)); + } + + @Test + public void testFilterStatusWhenFiltersHaveBeenAppliedAndFailed() { + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + assertThat(instance.getFilterStatus(), equalTo(FilterStatus.FAILED)); + } + + @Test + public void testFilterStatusWhenFiltersHaveBeenAppliedWithPassAndFailedResults() { + instance.addFilterResult(PASS_QUALITY_RESULT); + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + assertThat(instance.getFilterStatus(), equalTo(FilterStatus.FAILED)); + } + + @Test + public void testPassesFilterIsTrueWhenPassedFilterResultAdded() { + FilterType passedFilterType = PASS_QUALITY_RESULT.getFilterType(); + + instance.addFilterResult(PASS_QUALITY_RESULT); + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + + assertThat(instance.passedFilter(passedFilterType), is(true)); + } + + @Test + public void testPassesFilterIsFalseWhenFailedFilterResultAdded() { + FilterType filterType = FAIL_FREQUENCY_RESULT.getFilterType(); + + instance.addFilterResult(FAIL_FREQUENCY_RESULT); + + assertThat(instance.passedFilter(filterType), is(false)); + } + + @Test + public void testHasAnnotationsIsFalseByDefault() { + assertThat(instance.hasAnnotations(), is(false)); + } + + @Test + public void testIsXChromosomal_notXchromosomal() { + assertThat(instance.isXChromosomal(), is(false)); + } + + @Test + public void testIsXChromosomal_isXchromosomal() { + int chrX = 23; + instance = VariantEvaluation.builder(chrX, 1, "A", "T").build(); + assertThat(instance.isXChromosomal(), is(true)); + } + + @Test + public void testIsYChromosomal_notYchromosomal() { + assertThat(instance.isYChromosomal(), is(false)); + } + + @Test + public void testIsYChromosomal_isYchromosomal() { + int chrY = 24; + instance = VariantEvaluation.builder(chrY, 1, "A", "T").build(); + assertThat(instance.isYChromosomal(), is(true)); + } + + @Test + public void testIsOffExome_isFalseByDefault() { + assertThat(instance.isOffExome(), is(false)); + } + + @Test + public void testIsOffExome_EqualsBuilderValue() { + instance = testVariantBuilder().isOffExome(true).build(); + assertThat(instance.isOffExome(), is(true)); + } + + @Test + public void testGetChromosomeName_23isX() { + instance = VariantEvaluation.builder(23, 1, "A", "T").build(); + assertThat(instance.getChromosomeName(), equalTo("X")); + } + + @Test + public void testGetChromosomeName_24isY() { + instance = VariantEvaluation.builder(24, 1, "A", "T").build(); + assertThat(instance.getChromosomeName(), equalTo("Y")); + } + + @Test + public void testGetChromosomeName_25isM() { + instance = VariantEvaluation.builder(25, 1, "A", "T").build(); + assertThat(instance.getChromosomeName(), equalTo("M")); + } + + @Test + public void testGetGenotype_Het() { + instance = VariantEvaluation.builder(25, 1, "A", "T").build(); + assertThat(instance.getGenotypeString(), equalTo("0/1")); + } + + @Test + public void getVariantContext() { + VariantContext builtContext = instance.getVariantContext(); + assertThat(builtContext.getContig(), equalTo("chr" + CHROMOSOME_NAME)); + assertThat(builtContext.getStart(), equalTo(POSITION)); + assertThat(builtContext.getEnd(), equalTo(POSITION)); + assertThat(builtContext.getNAlleles(), equalTo(2)); + assertThat(builtContext.getReference().getBaseString(), equalTo(instance.getRef())); + assertThat(builtContext.getAlternateAllele(instance.getAltAlleleId()).getBaseString(), equalTo(instance.getAlt())); + assertThat(builtContext.getNSamples(), equalTo(instance.getNumberOfIndividuals())); + } + + @Test + public void getAltAlleleId_EqualsZeroWhenNotSet() { + assertThat(instance.getAltAlleleId(), equalTo(0)); + } + + @Test + public void getAltAlleleId_EqualsBuilderValue() { + int altAlleleId = 2; + instance = testVariantBuilder().altAlleleId(altAlleleId).build(); + assertThat(instance.getAltAlleleId(), equalTo(altAlleleId)); + } + + @Test + public void testGetVariantEffect_defaultValue() { + assertThat(instance.getVariantEffect(), equalTo(VariantEffect.SEQUENCE_VARIANT)); + } + + @Test + public void testIsPredictedPathogenic_falseByDefault() { + assertThat(instance.isPredictedPathogenic(), is(false)); + } + @Test + public void testIsPredictedPathogenic_missenseVariant() { + instance = testVariantBuilder().variantEffect(VariantEffect.MISSENSE_VARIANT).build(); + assertThat(instance.isPredictedPathogenic(), is(true)); + } + + @Test + public void testStopGainVariantIsPredictedPathogenicIsTrue() { + instance = testVariantBuilder().variantEffect(VariantEffect.STOP_GAINED).build(); + assertThat(instance.isPredictedPathogenic(), is(true)); + } + + @Test + public void testDownstreamVariantIsPredictedPathogenicIsFalse() { + instance = testVariantBuilder().variantEffect(VariantEffect.DOWNSTREAM_GENE_VARIANT).build(); + assertThat(instance.isPredictedPathogenic(), is(false)); + } + + @Test + public void testDoesNotContributeToGeneScoreByDefault() { + instance = testVariantBuilder().build(); + assertThat(instance.contributesToGeneScore(), is(false)); + } + + @Test + public void testCanSetAsContributingToGeneScore() { + instance = testVariantBuilder().build(); + instance.setAsContributingToGeneScore(); + assertThat(instance.contributesToGeneScore(), is(true)); + } + + @Test + public void testCompatibleInheritanceModes() { + Set compatibleModes = EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT, ModeOfInheritance.AUTOSOMAL_RECESSIVE); + instance.setInheritanceModes(compatibleModes); + assertThat(instance.getInheritanceModes(), equalTo(compatibleModes)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_RECESSIVE), is(true)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.AUTOSOMAL_DOMINANT), is(true)); + assertThat(instance.isCompatibleWith(ModeOfInheritance.ANY), is(false)); + } + + @Test + public void testCompareTo() { + //variants are sorted according to chromosome, position ref and alt. + VariantEvaluation zero = VariantEvaluation.builder(1, 1, "A", "C").build(); + VariantEvaluation one = VariantEvaluation.builder(1, 2, "A", "G").build(); + VariantEvaluation two = VariantEvaluation.builder(1, 2, "AC", "G").build(); + VariantEvaluation three = VariantEvaluation.builder(2, 1, "C", "T").build(); + VariantEvaluation four = VariantEvaluation.builder(2, 1, "C", "TT").build(); + + List variants = new ArrayList<>(); + variants.add(zero); + variants.add(one); + variants.add(two); + variants.add(three); + variants.add(four); + Collections.shuffle(variants); + + System.out.println("Shuffled:"); + variants.forEach(variant -> System.out.printf("chr: %2d pos: %2d ref: %-2s alt: %-2s%n", variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt())); + + Collections.sort(variants); + + List expected = new ArrayList<>(); + expected.add(zero); + expected.add(one); + expected.add(two); + expected.add(three); + expected.add(four); + + System.out.println("Sorted:"); + variants.forEach(variant -> System.out.printf("chr: %2d pos: %2d ref: %-2s alt: %-2s%n", variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt())); + assertThat(variants, equalTo(expected)); + } + + private List scoredVariantsInDescendingRankOrder() { + VariantEvaluation zero = VariantEvaluation.builder(2, 1, "C", "TT") + .variantEffect(VariantEffect.FRAMESHIFT_VARIANT) + .pathogenicityData(PathogenicityData.of(PolyPhenScore.valueOf(1.0f))) + .build(); + zero.setAsContributingToGeneScore(); + VariantEvaluation one = VariantEvaluation.builder(2, 1, "C", "T") + .variantEffect(VariantEffect.STOP_GAINED) + .frequencyData(FrequencyData.of(RsId.empty(), Frequency.valueOf(0.02f, FrequencySource.ESP_ALL))) + .pathogenicityData(PathogenicityData.of(PolyPhenScore.valueOf(1.0f))) + .build(); + one.setAsContributingToGeneScore(); + VariantEvaluation two = VariantEvaluation.builder(1, 2, "A", "G") + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .build(); + VariantEvaluation three = VariantEvaluation.builder(1, 2, "AC", "G") + .variantEffect(VariantEffect.MISSENSE_VARIANT) + .build(); + VariantEvaluation four = VariantEvaluation.builder(1, 1, "A", "C") + .variantEffect(VariantEffect.CODING_TRANSCRIPT_INTRON_VARIANT) + .build(); + + List variants = new ArrayList<>(); + variants.add(zero); + variants.add(one); + variants.add(two); + variants.add(three); + variants.add(four); + return variants; + } + + @Test + public void testVariantRankComparator() { + //variants are sorted according to whether they are contributing to the gene score, variant score, position ref and alt. + List variants = scoredVariantsInDescendingRankOrder(); + Collections.shuffle(variants); + + System.out.println("Shuffled:"); + variants.forEach(variant -> System.out.printf("%s score: %3f chr: %2d pos: %2d ref: %-2s alt: %-2s%n", (variant.contributesToGeneScore() ? '*' : ' '), variant + .getVariantScore(), variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt())); + + variants.sort(new VariantEvaluation.RankBasedComparator()); + + System.out.println("Sorted:"); + variants.forEach(variant -> System.out.printf("%s score: %3f chr: %2d pos: %2d ref: %-2s alt: %-2s%n", (variant.contributesToGeneScore() ? '*' : ' '), variant + .getVariantScore(), variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt())); + assertThat(variants, equalTo(scoredVariantsInDescendingRankOrder())); + } + + @Test + public void testVariantCompareByRank() { + //variants are sorted according to whether they are contributing to the gene score, variant score, position ref and alt. + List variants = scoredVariantsInDescendingRankOrder(); + Collections.shuffle(variants); + + System.out.println("Shuffled:"); + variants.forEach(variant -> System.out.printf("%s score: %3f chr: %2d pos: %2d ref: %-2s alt: %-2s%n", (variant.contributesToGeneScore() ? '*' : ' '), variant + .getVariantScore(), variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt())); + + variants.sort(VariantEvaluation::compareByRank); + + System.out.println("Sorted:"); + variants.forEach(variant -> System.out.printf("%s score: %3f chr: %2d pos: %2d ref: %-2s alt: %-2s%n", (variant.contributesToGeneScore() ? '*' : ' '), variant + .getVariantScore(), variant.getChromosome(), variant.getPosition(), variant.getRef(), variant.getAlt())); + assertThat(variants, equalTo(scoredVariantsInDescendingRankOrder())); + } + + @Test + public void testToString() { + String expected = "VariantEvaluation{chr=1 pos=1 ref=C alt=T qual=2.2 SEQUENCE_VARIANT score=0.0 UNFILTERED failedFilters=[] passedFilters=[] compatibleWith=[]}"; + System.out.println(instance); + assertThat(instance.toString(), equalTo(expected)); + } + + @Test + public void testToStringVariant_ContributesToGeneScore() { + String expected = "VariantEvaluation{chr=1 pos=1 ref=C alt=T qual=2.2 SEQUENCE_VARIANT * score=0.0 UNFILTERED failedFilters=[] passedFilters=[] compatibleWith=[]}"; + instance.setAsContributingToGeneScore(); + System.out.println(instance); + assertThat(instance.toString(), equalTo(expected)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantRecord.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantRecord.java new file mode 100644 index 000000000..f0ade50cc --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantRecord.java @@ -0,0 +1,86 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +/** + * @author Jules Jacobsen + */ +public class VariantRecord implements Comparable { + + private final String chr; + private final int start; + private final int end; + + private final String vcfRecord; + + public static VariantRecord valueOf(String vcfRecord) { + //CHR POS ID REF ALT QUAL FILTER INFO + String[] fields = vcfRecord.split("\t"); + if (fields.length < 4) { +// return new VariantRecord("", 0, 0, vcfRecord); + throw new IllegalArgumentException("Input string should contain minimum 4 tab separated fields - '" + vcfRecord + "'" ); + } + String chr = fields[0]; + int start = Integer.valueOf(fields[1]); + //TODO: this isn't right - need to test this for both insertions and deletions plus multiple alts. + int end = (start - 1) + fields[4].length(); + return new VariantRecord(chr, start, end, vcfRecord); + } + + public VariantRecord(String chr, int start, int end, String vcfRecord) { + this.chr = chr; + this.start = start; + this.end = end; + this.vcfRecord = vcfRecord; + } + + public String getChr() { + return chr; + } + + public int getStart() { + return start; + } + + public int getEnd() { + return end; + } + + public String getVcfRecord() { + return vcfRecord; + } + + @Override + public int compareTo(VariantRecord o) { + + return 0; + } + + @Override + public String toString() { + return "SimpleVariant{" + + "chr='" + chr + '\'' + + ", start=" + start + + ", end=" + end + + ", vcfRecord='" + vcfRecord + '\'' + + '}'; + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantRecordTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantRecordTest.java new file mode 100644 index 000000000..0fba09326 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/VariantRecordTest.java @@ -0,0 +1,91 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class VariantRecordTest { + + @Test + public void testConstructor() { + String vcfRecord = "chr1\t1\t.\tA\tT\t.\t.\tvariant info here"; + VariantRecord instance = VariantRecord.valueOf(vcfRecord); + System.out.println(instance); + assertThat(instance.getChr(), equalTo("chr1")); + assertThat(instance.getStart(), equalTo(1)); + assertThat(instance.getEnd(), equalTo(1)); + assertThat(instance.getVcfRecord(), equalTo(vcfRecord)); + } + + +// @Test +// public void loadFullGenomeVcf_StringsOnly() throws Exception { +// Path path = Paths.get("C:/Users/jj8/Documents/exomiser-cli-4.0.0/data/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.vcf"); +// +// System.out.printf("Loading file as Strings...%n"); +// //Takes about 1.5GB RAM, 7 secs for 4.4 million lines +// Instant startReadAllLines = Instant.now(); +// List lines = Files.readAllLines(path); +// Instant endReadAllLines = Instant.now(); +// System.out.printf("File has %d lines. Took %s ms to read.%n", lines.size(), Duration.between(startReadAllLines, endReadAllLines).toMillis()); +// } +// +// @Test +// public void loadFullGenomeVcf_VariantRecord() throws Exception { +// Path path = Paths.get("C:/Users/jj8/Documents/exomiser-cli-4.0.0/data/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.vcf"); +// +// System.out.printf("Loading file as VariantRecords...%n"); +// //sort by chr name (alphabetically), start, end +// Instant startReadVcf = Instant.now(); +// //Takes about 2GB RAM, 9 secs for 4.4 million lines +// List variantRecords = Files.newBufferedReader(path) +// .lines() +// .filter(line -> !line.startsWith("#")) +// .map(line -> VariantRecord.valueOf(line)) +// .collect(Collectors.toList()); +// +// Instant endReadVcf = Instant.now(); +// System.out.printf("File has %d lines. Took %s ms to read.%n", variantRecords.size(), Duration.between(startReadVcf, endReadVcf).toMillis()); +// } +// +// @Test +// public void loadFullGenomeVcf_VariantcontextToVariantRecord() throws Exception { +// Path path = Paths.get("C:/Users/jj8/Documents/exomiser-cli-4.0.0/data/NA19722_601952_AUTOSOMAL_RECESSIVE_POMP_13_29233225_5UTR_38.vcf"); +// +// System.out.printf("Loading file from VariantContext to VariantRecords...%n"); +// //sort by chr name (alphabetically), start, end +// Instant startReadVcf = Instant.now(); +// //yuk! This takes over 3GB RAM for 4.4 million variants +// VCFFileReader vcfFileReader = new VCFFileReader(path.toFile(), false); +// List variantRecords = StreamSupport.stream(vcfFileReader.spliterator(), true).map(variantContext -> new VariantRecord(variantContext.getContig(), variantContext.getStart(), variantContext.getEnd(), "")).collect(Collectors.toList()); +// vcfFileReader.close(); +// Instant endReadVcf = Instant.now(); +// System.out.printf("File has %d lines. Took %s ms to read.%n", variantRecords.size(), Duration.between(startReadVcf, endReadVcf).toMillis()); +// } + + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyDataTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyDataTest.java new file mode 100644 index 000000000..eea1ad910 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyDataTest.java @@ -0,0 +1,254 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.model.frequency; + +import org.junit.Test; + +import java.util.ArrayList; +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; +import static org.monarchinitiative.exomiser.core.model.frequency.FrequencySource.*; + +/** + * @author Jules Jacobsen + */ +public class FrequencyDataTest { + + private static final float FREQ_THRESHOLD = 0.1f; + private static final float PASS_FREQ = FREQ_THRESHOLD - 0.02f; + private static final float FAIL_FREQ = FREQ_THRESHOLD + 1.0f; + + private static final Frequency ESP_ALL_PASS = Frequency.valueOf(PASS_FREQ, ESP_ALL); + private static final Frequency ESP_AA_PASS = Frequency.valueOf(PASS_FREQ, ESP_AFRICAN_AMERICAN); + private static final Frequency ESP_EA_PASS = Frequency.valueOf(PASS_FREQ, ESP_EUROPEAN_AMERICAN); + private static final Frequency DBSNP_PASS = Frequency.valueOf(PASS_FREQ, THOUSAND_GENOMES); + + private static final RsId RSID = RsId.valueOf(12335); + + private static final FrequencyData FREQUENCY_DATA = FrequencyData.of(RSID, DBSNP_PASS, ESP_ALL_PASS, ESP_AA_PASS, ESP_EA_PASS); + private static final FrequencyData RS_ID_ONLY_DATA = FrequencyData.of(RSID); + private static final FrequencyData EMPTY_DATA = FrequencyData.empty(); + + + @Test + public void testEmptyData() { + assertThat(EMPTY_DATA.getRsId(), equalTo(RsId.empty())); + assertThat(EMPTY_DATA.getKnownFrequencies().isEmpty(), is(true)); + assertThat(EMPTY_DATA.isRepresentedInDatabase(), is(false)); + } + + @Test(expected = NullPointerException.class) + public void testThrowsExceptionWithNullRsId() { + FrequencyData.of(null, Collections.emptyList()); + } + + @Test + public void testEmptyInputValuesReturnsEmpty() { + FrequencyData instance = FrequencyData.of(RsId.empty(), Collections.emptyList()); + assertThat(instance, equalTo(FrequencyData.empty())); + } + + @Test + public void testSingleFrequencyValue() { + FrequencyData localFrequency = FrequencyData.of(RsId.empty(), Frequency.valueOf(0.001f, FrequencySource.LOCAL)); + assertThat(localFrequency.hasKnownFrequency(), is(true)); + } + + @Test + public void testGetRsId() { + assertThat(FREQUENCY_DATA.getRsId(), equalTo(RSID)); + } + + @Test + public void testGetDbSnpMaf() { + assertThat(FREQUENCY_DATA.getFrequencyForSource(THOUSAND_GENOMES), equalTo(DBSNP_PASS)); + } + + @Test + public void testGetEspEaMaf() { + assertThat(FREQUENCY_DATA.getFrequencyForSource(ESP_EUROPEAN_AMERICAN), equalTo(ESP_EA_PASS)); + } + + @Test + public void testGetEspAaMaf() { + assertThat(FREQUENCY_DATA.getFrequencyForSource(ESP_AFRICAN_AMERICAN), equalTo(ESP_AA_PASS)); + } + + @Test + public void testGetEspAllMaf() { + assertThat(FREQUENCY_DATA.getFrequencyForSource(ESP_ALL), equalTo(ESP_ALL_PASS)); + } + + @Test + public void testNotRepresentedInDatabase() { + assertThat(EMPTY_DATA.isRepresentedInDatabase(), is(false)); + } + + @Test + public void testRepresentedInDatabaseEspAllOnly() { + FrequencyData instance = FrequencyData.of(RsId.empty(), ESP_ALL_PASS); + assertThat(instance.isRepresentedInDatabase(), is(true)); + } + + @Test + public void testRepresentedInDatabaseRsIdOnly() { + assertThat(RS_ID_ONLY_DATA.isRepresentedInDatabase(), is(true)); + } + + @Test + public void testHasDbSnpData() { + assertThat(FREQUENCY_DATA.hasDbSnpData(), is(true)); + } + + @Test + public void testHasDbSnpRsIdTrue() { + assertThat(RS_ID_ONLY_DATA.hasDbSnpRsID(), is(true)); + } + + @Test + public void testHasDbSnpRsIdFalse() { + assertThat(EMPTY_DATA.hasDbSnpRsID(), is(false)); + } + + @Test + public void testHasEspDataTrue() { + FrequencyData instance = FrequencyData.of(RSID, ESP_ALL_PASS); + assertThat(instance.hasEspData(), is(true)); + } + + @Test + public void testHasEspDataFalseWhenEmpty() { + assertThat(EMPTY_DATA.hasEspData(), is(false)); + } + + @Test + public void testHasEspDataIsFalseWhenOnlyNonEspFrequenciesArePresent() { + FrequencyData instance = FrequencyData.of(RSID, Frequency.valueOf(PASS_FREQ, EXAC_FINNISH)); + assertThat(instance.hasEspData(), is(false)); + } + + @Test + public void testHasEspDataIsTrueWhenOtherNonEspFrequenciesArePresent() { + FrequencyData instance = FrequencyData.of(RSID, Frequency.valueOf(PASS_FREQ, THOUSAND_GENOMES), ESP_AA_PASS, Frequency + .valueOf(PASS_FREQ, EXAC_FINNISH)); + assertThat(instance.hasEspData(), is(true)); + } + + @Test + public void testHasExacDataTrue() { + FrequencyData instance = FrequencyData.of(RSID, Frequency.valueOf(PASS_FREQ, EXAC_AFRICAN_INC_AFRICAN_AMERICAN)); + assertThat(instance.hasExacData(), is(true)); + } + + @Test + public void testHasExacDataFalse() { + FrequencyData instance = FrequencyData.of(RSID, ESP_ALL_PASS); + assertThat(instance.hasExacData(), is(false)); + } + + @Test + public void testHasKnownFrequencyFalse() { + assertThat(EMPTY_DATA.hasKnownFrequency(), is(false)); + } + + @Test + public void testHasKnownFrequencyTrue() { + assertThat(FREQUENCY_DATA.hasKnownFrequency(), is(true)); + } + + @Test + public void testGetKnownFrequencies_noFrequencyData() { + assertThat(EMPTY_DATA.getKnownFrequencies(), equalTo(Collections.emptyList())); + } + + @Test + public void testGetKnownFrequencies() { + FrequencyData instance = FrequencyData.of(RSID, ESP_ALL_PASS, DBSNP_PASS, ESP_AA_PASS, ESP_EA_PASS); + List expResult = new ArrayList<>(); + expResult.add(DBSNP_PASS); + expResult.add(ESP_AA_PASS); + expResult.add(ESP_EA_PASS); + expResult.add(ESP_ALL_PASS); + + List result = instance.getKnownFrequencies(); + + assertThat(result, equalTo(expResult)); + } + + @Test + public void testGetKnownFrequencies_isImmutable() { + FrequencyData instance = FrequencyData.of(RSID, ESP_ALL_PASS, DBSNP_PASS, ESP_AA_PASS); + List expResult = new ArrayList<>(); + expResult.add(DBSNP_PASS); + expResult.add(ESP_AA_PASS); + expResult.add(ESP_ALL_PASS); + + //try and add another score to the instance post-construction + instance.getKnownFrequencies().add(ESP_EA_PASS); + + assertThat(instance.getKnownFrequencies(), equalTo(expResult)); + } + + @Test + public void testGetMaxFreqWhenNoData() { + float maxFreq = 0.0f; + assertThat(EMPTY_DATA.getMaxFreq(), equalTo(maxFreq)); + } + + @Test + public void testGetMaxFreqWithData() { + float maxFreq = 89.5f; + Frequency maxFrequency = Frequency.valueOf(maxFreq, UNKNOWN); + FrequencyData instance = FrequencyData.of(RSID, DBSNP_PASS, maxFrequency, ESP_AA_PASS, ESP_EA_PASS); + assertThat(instance.getMaxFreq(), equalTo(maxFreq)); + } + + @Test + public void testGetScore_reallyRareVariant() { + assertThat(EMPTY_DATA.getScore(), equalTo(1f)); + } + + @Test + public void testGetScore_commonVariant() { + float maxFreq = 100.0f; + Frequency maxFrequency = Frequency.valueOf(maxFreq, THOUSAND_GENOMES); + FrequencyData instance = FrequencyData.of(RSID, maxFrequency); + assertThat(instance.getScore(), equalTo(0f)); + } + + @Test + public void testGetScore_rareVariant() { + float maxFreq = 0.1f; + Frequency maxFrequency = Frequency.valueOf(maxFreq, UNKNOWN); + FrequencyData instance = FrequencyData.of(RsId.empty(), maxFrequency); + assertThat(instance.getScore(), equalTo(0.9857672f)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyIT.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyIT.java new file mode 100644 index 000000000..17ae53631 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyIT.java @@ -0,0 +1,200 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model.frequency; + +import org.junit.Test; + +import java.util.ArrayList; +import java.util.List; +import java.util.logging.Level; +import java.util.logging.Logger; + +/** + * + * @author Jules Jacobsen + */ +public class FrequencyIT { + + private static final int VARIANTS_IN_GENOME = 4000000; + private static final int VARIANTS_IN_EXOME = 40000; + + public static void main(String[] args) { + + sleep(10); + + List exomeMafList = createObjects(VARIANTS_IN_EXOME); + compareThresholdForObjects(exomeMafList, 23.0f); + + createPrimitives(VARIANTS_IN_EXOME); + List exomeFloats = createAutoBoxedPrimitives(VARIANTS_IN_EXOME); + compareThresholdForAutoBoxedPrimitives(exomeFloats, 23.0f); + + sleep(2); + + List genomeMafList = createObjects(VARIANTS_IN_GENOME); + compareThresholdForObjects(genomeMafList, 23.0f); + + createPrimitives(VARIANTS_IN_GENOME); + List genomeFloats = createAutoBoxedPrimitives(VARIANTS_IN_GENOME); + compareThresholdForAutoBoxedPrimitives(genomeFloats, 23.0f); + } + + private static void sleep(int secs) { + System.out.printf("Sleeping for %d secs%n", secs); + try { + Thread.sleep(secs * 1000); + } catch (InterruptedException ex) { + Logger.getLogger(FrequencyIT.class.getName()).log(Level.SEVERE, null, ex); + } + } + + private static List createObjects(int numObjects) { + long start = System.currentTimeMillis(); + int i = 0; + List mafList = new ArrayList<>(); + while (i < numObjects) { + i++; + //we're creating four variants here + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.ESP_ALL)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.ESP_AFRICAN_AMERICAN)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.ESP_EUROPEAN_AMERICAN)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.THOUSAND_GENOMES)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.EXAC_AMERICAN)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.EXAC_FINNISH)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.EXAC_AFRICAN_INC_AFRICAN_AMERICAN)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.EXAC_EAST_ASIAN)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.EXAC_NON_FINNISH_EUROPEAN)); + mafList.add(Frequency.valueOf(getRandomPercentage(), FrequencySource.EXAC_OTHER)); + } + long end = System.currentTimeMillis(); + + System.out.println(String.format("Took %dms to create %s %s objects", end - start, mafList.size(), Frequency.class.getName())); + return mafList; + } + + private static void compareThresholdForObjects(List mafList, float threshold) { + + long start = System.currentTimeMillis(); + + long mafOverThrehold = 0; + for (Frequency minorAlleleFrequency : mafList) { + if (minorAlleleFrequency.getFrequency() > threshold) { + mafOverThrehold++; + } + } + long end = System.currentTimeMillis(); + + System.out.println(String.format("Took %dms to compare %s %s objects - %s were over threshold of %s", end - start, mafList.size(), Frequency.class.getName(), mafOverThrehold, threshold)); + } + + private static void createPrimitives(int numObjects) { + long start = System.currentTimeMillis(); + int i = 0; + while (i < numObjects) { + i++; + getRandomPercentage(); + getRandomPercentage(); + getRandomPercentage(); + getRandomPercentage(); + getRandomPercentage(); + getRandomPercentage(); + getRandomPercentage(); + getRandomPercentage(); + getRandomPercentage(); + } + long end = System.currentTimeMillis(); + + System.out.println(String.format("Took %dms to create %s primitives", end - start, (long) i * 4)); + } + + private static List createAutoBoxedPrimitives(int numObjects) { + long start = System.currentTimeMillis(); + int i = 0; + List floatList = new ArrayList<>(); + while (i < numObjects) { + i++; + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + floatList.add(getRandomPercentage()); + } + long end = System.currentTimeMillis(); + + System.out.println(String.format("Took %dms to create %s %s objects", end - start, floatList.size(), Float.class.getName())); + return floatList; + } + + + private static void compareThresholdForAutoBoxedPrimitives(List floatList, float threshold) { + + long start = System.currentTimeMillis(); + + long overThrehold = 0; + for (Float value : floatList) { + if (value > threshold) { + overThrehold++; + } + } + long end = System.currentTimeMillis(); + + System.out.println(String.format("Took %dms to compare %s %s objects - %s were over threshold of %s", end - start, floatList.size(), Float.class.getName(), overThrehold, threshold)); + } + + private static float getRandomPercentage() { + return (float) Math.random() * 100; + } + + /** + * Attach the performance monitor to this method... + */ + @Test + public void testConstructorPerformanceGenome() { + int i = 0; + while (i < VARIANTS_IN_GENOME * 10) { + i++; + Frequency.valueOf(20f, FrequencySource.UNKNOWN); + } + System.out.println(i); + } + + /** + * Attach the performance monitor to this method... + */ + @Test + public void testOverThresholdPerformanceGenome() { + float threshold = 24.56f; + + for (int i = 0; i < VARIANTS_IN_GENOME * 10; i++) { + Frequency.valueOf(20f, FrequencySource.UNKNOWN); + } + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencySourceTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencySourceTest.java new file mode 100644 index 000000000..ab2e0bfad --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencySourceTest.java @@ -0,0 +1,83 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model.frequency; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class FrequencySourceTest { + + @Test + public void testValues() { + FrequencySource[] values = { + FrequencySource.UNKNOWN, + FrequencySource.LOCAL, + FrequencySource.THOUSAND_GENOMES, + FrequencySource.ESP_AFRICAN_AMERICAN, + FrequencySource.ESP_EUROPEAN_AMERICAN, + FrequencySource.ESP_ALL, + FrequencySource.EXAC_AFRICAN_INC_AFRICAN_AMERICAN, + FrequencySource.EXAC_AMERICAN, + FrequencySource.EXAC_EAST_ASIAN, + FrequencySource.EXAC_SOUTH_ASIAN, + FrequencySource.EXAC_FINNISH, + FrequencySource.EXAC_NON_FINNISH_EUROPEAN, + FrequencySource.EXAC_OTHER}; + + assertThat(FrequencySource.values(), equalTo(values)); + } + + @Test + public void testValueOf() { + assertThat(FrequencySource.valueOf("THOUSAND_GENOMES"), equalTo(FrequencySource.THOUSAND_GENOMES)); + } + + @Test + public void testGetSource() { + assertThat(FrequencySource.LOCAL.getSource(), equalTo("Local")); + } + + @Test + public void testGetAllExternalFrequencySources(){ + assertThat(FrequencySource.ALL_EXTERNAL_FREQ_SOURCES.size(), equalTo(11)); + } + + @Test + public void testGetAllEspFrequencySources(){ + assertThat(FrequencySource.ALL_ESP_SOURCES.size(), equalTo(3)); + } + + @Test + public void testGetAllExacFrequencySources(){ + assertThat(FrequencySource.ALL_EXAC_SOURCES.size(), equalTo(7)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyTest.java new file mode 100644 index 000000000..26b1eeb33 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/FrequencyTest.java @@ -0,0 +1,112 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model.frequency; + +import org.junit.Test; + +import java.util.Locale; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; +import static org.monarchinitiative.exomiser.core.model.frequency.FrequencySource.*; + +/** + * + * @author Jules Jacobsen + */ +public class FrequencyTest { + + @Test + public void testfrequencyOnlyConstructor(){ + float frequency = 1.0f; + Frequency instance = Frequency.valueOf(frequency, UNKNOWN); + assertThat(instance.getFrequency(), equalTo(frequency)); + assertThat(instance.getSource(), equalTo(FrequencySource.UNKNOWN)); + System.out.println(instance); + } + + @Test + public void testfrequencySourceInConstructor(){ + float frequency = 1.0f; + FrequencySource source = EXAC_NON_FINNISH_EUROPEAN; + + Frequency instance = Frequency.valueOf(frequency, source); + assertThat(instance.getFrequency(), equalTo(frequency)); + assertThat(instance.getSource(), equalTo(source)); + System.out.println(instance); + } + + @Test + public void testFrequencyIsOverThreshold() { + float threshold = 2.0f; + Frequency instance = Frequency.valueOf(4.0f, ESP_AFRICAN_AMERICAN); + + assertThat(instance.isOverThreshold(threshold), is(true)); + } + + @Test + public void testFrequencyIsNotOverThreshold() { + float threshold = 2.0f; + Frequency instance = Frequency.valueOf(1.0f, ESP_AFRICAN_AMERICAN); + + assertThat(instance.isOverThreshold(threshold), is(false)); + } + + @Test + public void testNotEqualToOtherFrequencyOfDifferentSource() { + Frequency other = Frequency.valueOf(1.0f, UNKNOWN); + Frequency instance = Frequency.valueOf(1.0f, ESP_AFRICAN_AMERICAN); + assertThat(instance, not(equalTo(other))); + } + + @Test + public void testEqualToOtherFrequencyOfSameSourceAndFrequecy() { + Frequency other = Frequency.valueOf(1.0f, UNKNOWN); + Frequency instance = Frequency.valueOf(1.0f, UNKNOWN); + assertThat(instance, equalTo(other)); + } + + @Test + public void testHashCodeEqual() { + Frequency other = Frequency.valueOf(1.0f, UNKNOWN); + Frequency instance = Frequency.valueOf(1.0f, UNKNOWN); + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + + @Test + public void testHashCodeNotEqual() { + Frequency other = Frequency.valueOf(1.0f, UNKNOWN); + Frequency instance = Frequency.valueOf(1.1f, UNKNOWN); + assertThat(instance.hashCode(), not(equalTo(other.hashCode()))); + } + + @Test + public void testToString() { + float frequency = 1.0f; + Frequency instance = Frequency.valueOf(frequency, UNKNOWN); + assertThat(instance.toString(), equalTo(String.format(Locale.UK, "Frequency{%s source=UNKNOWN}", frequency))); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/RsIdTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/RsIdTest.java new file mode 100644 index 000000000..3d13d104f --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/frequency/RsIdTest.java @@ -0,0 +1,131 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.model.frequency; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class RsIdTest { + + private static final int ID = 234567364; + private static final RsId instance = RsId.valueOf(ID); + + @Test + public void testGetId() { + assertThat(instance.getId(), equalTo(ID)); + } + + @Test + public void testHashCode() { + RsId other = RsId.valueOf(ID); + int expected = other.hashCode(); + assertThat(instance.hashCode(), equalTo(expected)); + } + + @Test + public void testEqualsNotNull() { + assertThat(instance.equals(null), is(false)); + } + + @Test + public void testEqualsNotSomethingElse() { + assertThat(instance.equals("1335464574"), is(false)); + } + + @Test + public void testNotEqualsDifferentId() { + assertThat(instance.equals(RsId.valueOf(ID + 1)), is(false)); + } + + @Test + public void testEquals() { + assertThat(instance.equals(RsId.valueOf(ID)), is(true)); + } + + @Test + public void testToString() { + assertThat(instance.toString(), equalTo("rs234567364")); + } + + @Test + public void testValueOfNullReturnsEmpty() { + assertThat(RsId.valueOf(null), equalTo(RsId.empty())); + } + + @Test + public void testValueOfLessThanZeroReturnsEmpty() { + assertThat(RsId.valueOf(Integer.MIN_VALUE), equalTo(RsId.empty())); + } + + @Test + public void testValueOfZeroReturnsEmpty() { + assertThat(RsId.valueOf(0), equalTo(RsId.empty())); + } + + @Test + public void testValueOfEmpty() { + assertThat(RsId.valueOf("."), equalTo(RsId.empty())); + } + + @Test + public void testIsEmpty() { + assertThat(RsId.empty().isEmpty(), is(true)); + } + + @Test + public void testNotEmpty() { + assertThat(RsId.valueOf(123456).isEmpty(), is(false)); + } + + @Test + public void testEmptyToString() { + assertThat(RsId.empty().toString(), equalTo(".")); + } + + @Test + public void testParseValidRsId() { + assertThat(RsId.valueOf("rs123456"), equalTo(RsId.valueOf(123456))); + } + + @Test + public void testParseRsIdFromStringInt() { + assertThat(RsId.valueOf("123456"), equalTo(RsId.valueOf(123456))); + } + + @Test(expected = NumberFormatException.class) + public void testValueOfInvalidThrowsException() { + RsId.valueOf("wibble"); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/CaddScoreTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/CaddScoreTest.java new file mode 100644 index 000000000..02b85250a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/CaddScoreTest.java @@ -0,0 +1,57 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class CaddScoreTest { + + private CaddScore instance; + float score = 1.0f; + + @Before + public void setUp() { + instance = CaddScore.valueOf(score); + } + + @Test + public void testGetSource() { + assertThat(instance.getSource(), equalTo(PathogenicitySource.CADD)); + } + + @Test + public void testToString() { + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/MutationTasterScoreTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/MutationTasterScoreTest.java new file mode 100644 index 000000000..88218ea6d --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/MutationTasterScoreTest.java @@ -0,0 +1,61 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class MutationTasterScoreTest { + + private final MutationTasterScore instance = MutationTasterScore.valueOf(1.0f); + + @Test + public void testGetSource() { + assertThat(instance.getSource(), equalTo(PathogenicitySource.MUTATION_TASTER)); + } + + @Test + public void testNotEqualsOtherSourceType() { + MutationTasterScore mutationTasterScore = MutationTasterScore.valueOf(0f); + SiftScore siftScore = SiftScore.valueOf(0f); + assertThat(mutationTasterScore.equals(siftScore), is(false)); + } + + @Test + public void testEqualsSameSourceType() { + MutationTasterScore first = MutationTasterScore.valueOf(0f); + MutationTasterScore other = MutationTasterScore.valueOf(0f); + assertThat(first.equals(other), is(true)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityDataTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityDataTest.java new file mode 100644 index 000000000..0635835af --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityDataTest.java @@ -0,0 +1,275 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import org.hamcrest.CoreMatchers; +import org.junit.Test; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PathogenicityDataTest { + + private static final PathogenicityData EMPTY_DATA = PathogenicityData.empty(); + + private static final float SIFT_PASS_SCORE = SiftScore.SIFT_THRESHOLD - 0.01f; + private static final float SIFT_FAIL_SCORE = SiftScore.SIFT_THRESHOLD + 0.01f; + + private static final SiftScore SIFT_PASS = SiftScore.valueOf(SIFT_PASS_SCORE); + private static final SiftScore SIFT_FAIL = SiftScore.valueOf(SIFT_FAIL_SCORE); + + private static final float POLYPHEN_PASS_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f; + private static final float POLYPHEN_FAIL_SCORE = PolyPhenScore.POLYPHEN_THRESHOLD - 0.1f; + + private static final PolyPhenScore POLYPHEN_PASS = PolyPhenScore.valueOf(POLYPHEN_PASS_SCORE); + private static final PolyPhenScore POLYPHEN_FAIL = PolyPhenScore.valueOf(POLYPHEN_FAIL_SCORE); + + private static final float MTASTER_PASS_SCORE = MutationTasterScore.MTASTER_THRESHOLD + 0.01f; + private static final float MTASTER_FAIL_SCORE = MutationTasterScore.MTASTER_THRESHOLD - 0.01f; + + private static final MutationTasterScore MTASTER_PASS = MutationTasterScore.valueOf(MTASTER_PASS_SCORE); + private static final MutationTasterScore MTASTER_FAIL = MutationTasterScore.valueOf(MTASTER_FAIL_SCORE); + + @Test + public void testEmptyData() { + PathogenicityData instance = PathogenicityData.empty(); + assertThat(instance.hasPredictedScore(), is(false)); + assertThat(instance.getPredictedPathogenicityScores().isEmpty(), is(true)); + assertThat(instance.getMostPathogenicScore(), nullValue()); + assertThat(instance.getScore(), equalTo(0f)); + System.out.println(instance); + } + + @Test + public void testHasPredictedScore_returnsFalseWhenNullsUsedInConstructor() { + PathogenicityData instance = PathogenicityData.of(null, null); + assertThat(instance.hasPredictedScore(), is(false)); + } + + @Test + public void testGetPredictedPathogenicityScores_isEmptyWhenNullsUsedInConstructor() { + PathogenicityData instance = PathogenicityData.of(null, null); + assertThat(instance.getPredictedPathogenicityScores().isEmpty(), is(true)); + } + + @Test + public void testPathogenicityData_RemovesNullsUsedInConstructor() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_FAIL, null); + assertThat(instance.getPredictedPathogenicityScores().isEmpty(), is(false)); + assertThat(instance.getPredictedPathogenicityScores().size(), equalTo(1)); + } + + @Test + public void testGetMostPathogenicScore_ReturnsNullWhenNoScorePresent() { + PathogenicityScore mostPathogenicScore = PathogenicityData.empty().getMostPathogenicScore(); + assertThat(mostPathogenicScore, nullValue()); + } + + @Test + public void testGetMostPathogenicScore_ReturnsOnlyScoreWhenOneScorePresent() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_FAIL); + PathogenicityScore mostPathogenicScore = instance.getMostPathogenicScore(); + assertThat(mostPathogenicScore, equalTo(POLYPHEN_FAIL)); + } + + @Test + public void testConstructorWithCollection_ReturnsMostPathogenicScore() { + PathogenicityData instance = PathogenicityData.of(Arrays.asList(POLYPHEN_FAIL, SIFT_PASS)); + PathogenicityScore mostPathogenicScore = instance.getMostPathogenicScore(); + assertThat(mostPathogenicScore, equalTo(SIFT_PASS)); + } + + @Test + public void testGetMostPathogenicScore_ReturnsMostPathogenicScore() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_FAIL, SIFT_PASS); + PathogenicityScore mostPathogenicScore = instance.getMostPathogenicScore(); + assertThat(mostPathogenicScore, equalTo(SIFT_PASS)); + } + + @Test + public void testGetPolyPhenScore() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_FAIL); + PolyPhenScore result = instance.getPolyPhenScore(); + assertThat(result, equalTo(POLYPHEN_FAIL)); + } + + @Test + public void testGetMutationTasterScore() { + PathogenicityData instance = PathogenicityData.of(MTASTER_PASS); + MutationTasterScore result = instance.getMutationTasterScore(); + assertThat(result, equalTo(MTASTER_PASS)); + } + + @Test + public void testGetSiftScore() { + PathogenicityData instance = PathogenicityData.of(SIFT_FAIL); + SiftScore result = instance.getSiftScore(); + assertThat(result, equalTo(SIFT_FAIL)); + } + + @Test + public void testGetRemmScore() { + PathogenicityData instance = PathogenicityData.of(RemmScore.valueOf(1f)); + RemmScore result = instance.getRemmScore(); + assertThat(result, equalTo(RemmScore.valueOf(1f))); + } + + @Test + public void testGetSiftScore_ReturnsNullWhenNoSiftScorePresent() { + PathogenicityData instance = PathogenicityData.of(); + SiftScore result = instance.getSiftScore(); + assertThat(result, nullValue()); + } + + @Test + public void testGetCaddScore() { + CaddScore caddScore = CaddScore.valueOf(POLYPHEN_PASS_SCORE); + PathogenicityData instance = PathogenicityData.of(caddScore); + CaddScore result = instance.getCaddScore(); + assertThat(result, equalTo(caddScore)); + } + + @Test + public void testGetPredictedPathogenicityScores() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_PASS, MTASTER_PASS, SIFT_FAIL); + List expResult = new ArrayList<>(); + expResult.add(POLYPHEN_PASS); + expResult.add(MTASTER_PASS); + expResult.add(SIFT_FAIL); + + List result = instance.getPredictedPathogenicityScores(); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testGetPredictedPathogenicityScores_isImmutable() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_PASS, MTASTER_PASS, SIFT_FAIL); + List expResult = new ArrayList<>(); + expResult.add(POLYPHEN_PASS); + expResult.add(MTASTER_PASS); + expResult.add(SIFT_FAIL); + //try and add another score to the instance post-construction + instance.getPredictedPathogenicityScores().add(SIFT_PASS); + + List result = instance.getPredictedPathogenicityScores(); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testHasPredictedScore() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_PASS, MTASTER_PASS, SIFT_FAIL); + boolean result = instance.hasPredictedScore(); + assertThat(result, is(true)); + } + + @Test + public void testHasPredictedScoreForSource_isTrue() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_PASS); + boolean result = instance.hasPredictedScore(PathogenicitySource.POLYPHEN); + assertThat(result, is(true)); + } + + @Test + public void testHasPredictedScoreForSource_isFalse() { + boolean result = EMPTY_DATA.hasPredictedScore(PathogenicitySource.POLYPHEN); + assertThat(result, is(false)); + } + + @Test + public void testGetPredictedScore_scorePresent() { + PathogenicityData instance = PathogenicityData.of(POLYPHEN_PASS); + PathogenicityScore result = instance.getPredictedScore(PathogenicitySource.POLYPHEN); + assertThat(result.getScore(), equalTo(POLYPHEN_PASS.getScore())); + assertThat(result.getSource(), equalTo(POLYPHEN_PASS.getSource())); + assertThat(result, equalTo(POLYPHEN_PASS)); + } + + @Test + public void testGetPredictedScore_scoreMissingReturnsNull() { + assertThat(EMPTY_DATA.getPredictedScore(PathogenicitySource.POLYPHEN), is(nullValue())); + } + + @Test + public void testIsEmpty() { + assertThat(EMPTY_DATA.isEmpty(), is(true)); + } + + @Test + public void testHasNoPredictedScore() { + assertThat(EMPTY_DATA.hasPredictedScore(), is(false)); + } + + @Test + public void testHashCodeEquals() { + PathogenicityData otherInstance = PathogenicityData.empty(); + assertThat(EMPTY_DATA.hashCode(), equalTo(otherInstance.hashCode())); + } + + @Test + public void testHashCodeNotEquals() { + PathogenicityData otherInstance = PathogenicityData.of(MTASTER_FAIL); + assertThat(EMPTY_DATA.hashCode(), CoreMatchers.not(otherInstance.hashCode())); + } + + @Test + public void testNotEquals() { + PathogenicityData otherInstance = PathogenicityData.of(MTASTER_FAIL); + assertThat(EMPTY_DATA.equals(otherInstance), is(false)); + } + + @Test + public void testGetScore_NoPredictedData() { + assertThat(PathogenicityData.empty().getScore(), equalTo(0f)); + } + + @Test + public void testGetScore_NonSiftPredictedData() { + PathogenicityData instance = PathogenicityData.of(MTASTER_PASS, POLYPHEN_FAIL); + assertThat(instance.getScore(), equalTo(MTASTER_PASS_SCORE)); + } + + @Test + public void testGetScore_ReturnsNormalisedSiftScore() { + PathogenicityData instance = PathogenicityData.of(MTASTER_FAIL, SIFT_PASS); + assertThat(instance.getScore(), equalTo(1 - SIFT_PASS_SCORE)); + } + + @Test + public void testEquals() { + PathogenicityData instance = PathogenicityData.of(MTASTER_FAIL); + PathogenicityData otherInstance = PathogenicityData.of(MTASTER_FAIL); + assertThat(instance.equals(otherInstance), is(true)); + } + + @Test + public void testToString() { + PathogenicityData instance = PathogenicityData.of(MTASTER_FAIL, POLYPHEN_PASS, SIFT_PASS); + System.out.println(instance); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityScoreTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityScoreTest.java new file mode 100644 index 000000000..4498e5d1e --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PathogenicityScoreTest.java @@ -0,0 +1,141 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import org.junit.Before; +import org.junit.Test; + +import java.util.ArrayList; +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author jj8 + */ +public class PathogenicityScoreTest { + + public PathogenicityScoreTest() { + } + + @Before + public void setUp() { + } + + + @Test + public void testComparableOnlySiftScores() { + SiftScore mostPathogenic = SiftScore.valueOf(0.001f); + SiftScore belowThreshold = SiftScore.valueOf(SiftScore.SIFT_THRESHOLD + 0.01f); + SiftScore aboveThreshold = SiftScore.valueOf(SiftScore.SIFT_THRESHOLD - 0.01f); + SiftScore leastPathogenic = SiftScore.valueOf(0.999f); + + + List scores = new ArrayList<>(); + scores.add(leastPathogenic); + scores.add(mostPathogenic); + scores.add(belowThreshold); + scores.add(aboveThreshold); + + List expected = new ArrayList<>(); + expected.add(mostPathogenic); + expected.add(aboveThreshold); + expected.add(belowThreshold); + expected.add(leastPathogenic); + + Collections.sort(scores); + + assertThat(scores, equalTo(expected)); + + } + + @Test + public void testComparableWithSiftScores() { + SiftScore mostPathogenic = SiftScore.valueOf(0.001f); + SiftScore leastPathogenic = SiftScore.valueOf(0.998f); + PolyPhenScore overThreshold = PolyPhenScore.valueOf(PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f); + PolyPhenScore belowThreshold = PolyPhenScore.valueOf(PolyPhenScore.POLYPHEN_THRESHOLD - 0.01f); + MutationTasterScore damaging = MutationTasterScore.valueOf(MutationTasterScore.MTASTER_THRESHOLD + 0.001f); + MutationTasterScore notdamaging = MutationTasterScore.valueOf(MutationTasterScore.MTASTER_THRESHOLD - 0.001f); + + List scores = new ArrayList<>(); + scores.add(damaging); + scores.add(leastPathogenic); + scores.add(mostPathogenic); + scores.add(notdamaging); + scores.add(belowThreshold); + scores.add(overThreshold); + + Collections.sort(scores); + + List expected = new ArrayList<>(); + expected.add(mostPathogenic); + expected.add(damaging); + expected.add(notdamaging); + expected.add(overThreshold); + expected.add(belowThreshold); + expected.add(leastPathogenic); + + assertThat(scores, equalTo(expected)); + + } + + @Test + public void testComparableNoSiftScores() { + + PolyPhenScore overThreshold = PolyPhenScore.valueOf(PolyPhenScore.POLYPHEN_THRESHOLD + 0.1f); + PolyPhenScore belowThreshold = PolyPhenScore.valueOf(PolyPhenScore.POLYPHEN_THRESHOLD - 0.01f); + MutationTasterScore damaging = MutationTasterScore.valueOf(MutationTasterScore.MTASTER_THRESHOLD + 0.001f); + + List scores = new ArrayList<>(); + scores.add(damaging); + scores.add(belowThreshold); + scores.add(overThreshold); + + List expected = new ArrayList<>(); + expected.add(damaging); + expected.add(overThreshold); + expected.add(belowThreshold); + + Collections.sort(scores); + + assertThat(scores, equalTo(expected)); + + } + + @Test(expected = NullPointerException.class) + public void comparingAPathogenicityScoreToANullThrowsANullPOinterException() { + PolyPhenScore polyPhenScore = PolyPhenScore.valueOf(1); + PolyPhenScore nullScore = null; + + polyPhenScore.compareTo(nullScore); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PolyPhenScoreTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PolyPhenScoreTest.java new file mode 100644 index 000000000..e4ab96947 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/PolyPhenScoreTest.java @@ -0,0 +1,71 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PolyPhenScoreTest { + + private PolyPhenScore instance; + private final float pathogenicScore = 1f; + private final float nonPathogenicScore = 0f; + + @Before + public void setUp() { + instance = PolyPhenScore.valueOf(pathogenicScore); + } + + @Test + public void testGetSource() { + assertThat(instance.getSource(), equalTo(PathogenicitySource.POLYPHEN)); + } + + @Test + public void testCompareTo_Before() { + PolyPhenScore nonPathogenicPolyphen = PolyPhenScore.valueOf(nonPathogenicScore); + assertThat(instance.compareTo(nonPathogenicPolyphen), equalTo(-1)); + } + + @Test + public void testCompareTo_After() { + PolyPhenScore nonPathogenicPolyphen = PolyPhenScore.valueOf(nonPathogenicScore); + assertThat(nonPathogenicPolyphen.compareTo(instance), equalTo(1)); + } + + @Test + public void testCompareTo_Equals() { + PolyPhenScore sameScore = PolyPhenScore.valueOf(pathogenicScore); + assertThat(instance.compareTo(sameScore), equalTo(0)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/RemmScoreTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/RemmScoreTest.java new file mode 100644 index 000000000..a1104e87d --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/RemmScoreTest.java @@ -0,0 +1,46 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class RemmScoreTest { + + RemmScore instance = RemmScore.valueOf(1f); + + @Test + public void testGetSource() { + assertThat(instance.getSource(), equalTo(PathogenicitySource.REMM)); + } + + @Test + public void testToString() { + assertThat(instance.toString(), equalTo("REMM: 1.000")); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/SiftScoreTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/SiftScoreTest.java new file mode 100644 index 000000000..7a945bf20 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/SiftScoreTest.java @@ -0,0 +1,146 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class SiftScoreTest { + + private SiftScore instance; + + //Higher scores are more pathogenic so this is the reverse of what's normal + //a negative integer, zero, or a positive integer as this object is less than, equal to, or greater than the specified object + private static final int MORE_PATHOGENIC = BasePathogenicityScore.MORE_PATHOGENIC; + private static final int EQUALS = BasePathogenicityScore.EQUALS; + private static final int LESS_PATHOGENIC = BasePathogenicityScore.LESS_PATHOGENIC; + + private static final float SIFT_PATHOGENIC_SCORE = SiftScore.SIFT_THRESHOLD - 0.01f; + private static final float SIFT_NON_PATHOGENIC_SCORE = SiftScore.SIFT_THRESHOLD + 0.01f; + + @Test + public void testGetSource() { + instance = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + assertThat(instance.getSource(), equalTo(PathogenicitySource.SIFT)); + } + + @Test + public void testToStringTolerated() { + instance = SiftScore.valueOf(0.1f); + assertThat(instance.toString(), equalTo("SIFT: 0.100 (T)")); + } + + @Test + public void testToStringDamaging() { + instance = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + assertThat(instance.toString(), equalTo(String.format("SIFT: %.3f (D)", SIFT_PATHOGENIC_SCORE))); + } + + @Test + public void testNotEqualToAnotherSiftScore() { + SiftScore pathogenic = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + SiftScore nonPathogenic = SiftScore.valueOf(SIFT_NON_PATHOGENIC_SCORE); + assertThat(nonPathogenic.equals(pathogenic), is(false)); + } + + @Test + public void testEqualToAnotherSiftScore() { + SiftScore sift = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + SiftScore anotherPathogenic = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + assertThat(anotherPathogenic.equals(sift), is(true)); + } + + @Test + public void testNotEqualToAnotherPathogenicityScoreWithSameScore() { + SiftScore sift = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + PathogenicityScore poly = PolyPhenScore.valueOf(SIFT_PATHOGENIC_SCORE); + assertThat(sift.equals(poly), is(false)); + } + + @Test + public void testCompareToAfterAgainstAnotherSiftScore() { + SiftScore pathogenic = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + SiftScore nonPathogenic = SiftScore.valueOf(SIFT_NON_PATHOGENIC_SCORE); + assertThat(pathogenic.compareTo(nonPathogenic), equalTo(MORE_PATHOGENIC)); + } + + @Test + public void testCompareToBeforeAgainstAnotherSiftScore() { + SiftScore pathogenic = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + SiftScore nonPathogenic = SiftScore.valueOf(SIFT_NON_PATHOGENIC_SCORE); + assertThat(nonPathogenic.compareTo(pathogenic), equalTo(LESS_PATHOGENIC)); + } + + @Test + public void testCompareToEqualsAgainstAnotherSiftScore() { + SiftScore sift = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + SiftScore equalScoreSift = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + assertThat(sift.compareTo(equalScoreSift), equalTo(EQUALS)); + } + + @Test(expected = NullPointerException.class) + public void testCompareToAfterAgainstANullSiftScoreThrowsANullPointer() { + SiftScore pathogenic = SiftScore.valueOf(SIFT_PATHOGENIC_SCORE); + SiftScore nonPathogenic = null; + assertThat(pathogenic.compareTo(nonPathogenic), equalTo(MORE_PATHOGENIC)); + } + + @Test + public void testCompareToAfterAnotherPathogenicityScore() { + PathogenicityScore sift = SiftScore.valueOf(0.999f); + PathogenicityScore poly = PolyPhenScore.valueOf(0.999f); + assertThat(sift.compareTo(poly), equalTo(LESS_PATHOGENIC)); + } + + @Test + public void testCompareToBeforeAnotherPathogenicityScore() { + PathogenicityScore sift = SiftScore.valueOf(0.01f); + PathogenicityScore poly = MutationTasterScore.valueOf(0.01f); + assertThat(sift.compareTo(poly), equalTo(MORE_PATHOGENIC)); + } + + @Test + public void testCompareToEqualsAnotherPathogenicityScore() { + PathogenicityScore sift = SiftScore.valueOf(0.4f); + PathogenicityScore poly = PolyPhenScore.valueOf(0.6f); + assertThat(sift.compareTo(poly), equalTo(EQUALS)); + } + + @Test + public void testAnotherPathogenicityScoreCompareToEquals() { + PathogenicityScore sift = SiftScore.valueOf(0.4f); + PathogenicityScore poly = PolyPhenScore.valueOf(0.6f); + assertThat(poly.compareTo(sift), equalTo(EQUALS)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/VariantTypePathogenicityScoresTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/VariantTypePathogenicityScoresTest.java new file mode 100644 index 000000000..977a8e9d7 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/model/pathogenicity/VariantTypePathogenicityScoresTest.java @@ -0,0 +1,70 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.model.pathogenicity; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author jj8 + */ +public class VariantTypePathogenicityScoresTest { + + public VariantTypePathogenicityScoresTest() { + } + + @Before + public void setUp() { + } + + @Test + public void testGetPathogenicityScoreForDefaultMissense() { + VariantEffect variantEffect = VariantEffect.MISSENSE_VARIANT; + float result = VariantTypePathogenicityScores.getPathogenicityScoreOf(variantEffect); + assertThat(result, equalTo(VariantTypePathogenicityScores.DEFAULT_MISSENSE_SCORE)); + } + + @Test + public void testGetPathogenicityScoreForStartLoss() { + VariantEffect variantEffect = VariantEffect.START_LOST; + float result = VariantTypePathogenicityScores.getPathogenicityScoreOf(variantEffect); + assertThat(result, equalTo(VariantTypePathogenicityScores.STARTLOSS_SCORE)); + } + + @Test + public void testGetPathogenicityScoreForNonPathogenicVariantType() { + VariantEffect variantEffect = VariantEffect.DOWNSTREAM_GENE_VARIANT; + float result = VariantTypePathogenicityScores.getPathogenicityScoreOf(variantEffect); + assertThat(result, equalTo(VariantTypePathogenicityScores.NON_PATHOGENIC_SCORE)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/CrossSpeciesPhenotypeMatcherTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/CrossSpeciesPhenotypeMatcherTest.java new file mode 100644 index 000000000..b1ab9c819 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/CrossSpeciesPhenotypeMatcherTest.java @@ -0,0 +1,125 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import com.google.common.collect.Lists; +import com.google.common.collect.Sets; +import org.junit.Before; +import org.junit.Test; + +import java.util.*; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.not; +import static org.hamcrest.Matchers.containsInAnyOrder; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class CrossSpeciesPhenotypeMatcherTest { + + private CrossSpeciesPhenotypeMatcher instance; + + //Nose phenotypes + private final PhenotypeTerm bigNose = PhenotypeTerm.of("HP:0000001", "Big nose"); + private final PhenotypeTerm nose = PhenotypeTerm.of("HP:0000002", "Nose"); + private final PhenotypeTerm littleNose = PhenotypeTerm.of("HP:0000003", "Little nose"); + + private final PhenotypeMatch perfectNoseMatch = PhenotypeMatch.builder().query(bigNose).match(bigNose).lcs(bigNose).simj(1.0).score(4.0).build(); + private final PhenotypeMatch noseMatch = PhenotypeMatch.builder().query(bigNose).match(littleNose).lcs(nose).simj(0.5).score(1.0).build(); + + //Toe phenotypes + private final PhenotypeTerm toe = PhenotypeTerm.of("HP:0000004", "Toe"); + private final PhenotypeTerm bigToe = PhenotypeTerm.of("HP:0000005", "Big toe"); + private final PhenotypeTerm crookedToe = PhenotypeTerm.of("HP:0000006", "Crooked toe"); + private final PhenotypeTerm longToe = PhenotypeTerm.of("HP:0000007", "Long toe"); + + private final PhenotypeMatch bestToeMatch = PhenotypeMatch.builder().query(bigToe).match(longToe).lcs(toe).score(2.0).build(); + private final PhenotypeMatch bigToeCrookedToeMatch = PhenotypeMatch.builder().query(bigToe).match(crookedToe).lcs(toe).score(1.5).build(); + + @Before + public void setUp() { + Map> phenotypeMatches = new LinkedHashMap<>(); + phenotypeMatches.put(bigNose, Sets.newHashSet(perfectNoseMatch, noseMatch)); + phenotypeMatches.put(bigToe, Sets.newHashSet(bestToeMatch, bigToeCrookedToeMatch)); + + instance = new CrossSpeciesPhenotypeMatcher(Organism.HUMAN, phenotypeMatches); + + //TODO: would this make more sense? + //QueryPhenotypeMatch queryPhenotypeMatch = new QueryPhenotypeMatch(Organism.HUMAN, phenotypeMatches); + //CrossSpeciesPhenotypeMatcher phenotypeMatcher = new CrossSpeciesPhenotypeMatcher(queryPhenotypeMatch); + } + + @Test + public void emptyInputValues() throws Exception { + CrossSpeciesPhenotypeMatcher instance = new CrossSpeciesPhenotypeMatcher(Organism.HUMAN, Collections.emptyMap()); + + assertThat(instance.getOrganism(), equalTo(Organism.HUMAN)); + assertThat(instance.getQueryTerms(), equalTo(Collections.emptyList())); + assertThat(instance.getTermPhenotypeMatches(), equalTo(Collections.emptyMap())); + } + + @Test + public void testEquals() { + CrossSpeciesPhenotypeMatcher emptyHumanOne = new CrossSpeciesPhenotypeMatcher(Organism.HUMAN, Collections.emptyMap()); + CrossSpeciesPhenotypeMatcher emptyMouseOne = new CrossSpeciesPhenotypeMatcher(Organism.MOUSE, Collections.emptyMap()); + CrossSpeciesPhenotypeMatcher emptyHumanTwo = new CrossSpeciesPhenotypeMatcher(Organism.HUMAN, Collections.emptyMap()); + assertThat(emptyHumanOne, equalTo(emptyHumanTwo)); + assertThat(emptyHumanOne, not(equalTo(emptyMouseOne))); + } + + @Test + public void testToString() { + System.out.println(new CrossSpeciesPhenotypeMatcher(Organism.HUMAN, Collections.emptyMap())); + System.out.println(instance); + } + + @Test + public void testGetBestForwardAndReciprocalMatches_returnsEmptyListFromEmptyQuery() throws Exception { + assertThat(instance.calculateBestForwardAndReciprocalMatches(Collections.emptyList()), equalTo(Collections.emptyList())); + } + + @Test + public void testGetBestForwardAndReciprocalMatches() throws Exception { + List modelPhenotypes = Lists.newArrayList(littleNose.getId(), longToe.getId()); + List expected = Lists.newArrayList(noseMatch, bestToeMatch, noseMatch, bestToeMatch); + expected.forEach(match -> System.out.printf("%s-%s=%f%n", match.getQueryPhenotypeId(), match.getMatchPhenotypeId(), match.getScore())); + assertThat(instance.calculateBestForwardAndReciprocalMatches(modelPhenotypes), equalTo(expected)); + } + + @Test + public void testCanCalculateBestPhenotypeMatchesByTerm() { + List bestForwardAndReciprocalMatches = Lists.newArrayList(noseMatch, bestToeMatch, perfectNoseMatch, bestToeMatch); + List result = instance.calculateBestPhenotypeMatchesByTerm(bestForwardAndReciprocalMatches); + assertThat(result, containsInAnyOrder(bestToeMatch, perfectNoseMatch)); + } + + @Test + public void testCalculateBestPhenotypeMatchesByTermReturnsEmptyMapForEmptyInputList() { + assertThat(instance.calculateBestPhenotypeMatchesByTerm(Collections.emptyList()), equalTo(Collections.emptyList())); + } + + @Test + public void testCanGetTheoreticalBestModel() { + assertThat(instance.getQueryPhenotypeMatch(), equalTo(new QueryPhenotypeMatch(Organism.HUMAN, instance.getTermPhenotypeMatches()))); + } +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmModelScorerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmModelScorerTest.java new file mode 100644 index 000000000..41b39e842 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenodigmModelScorerTest.java @@ -0,0 +1,194 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import com.google.common.collect.ImmutableList; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.service.OntologyService; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneDiseaseModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; + +import java.util.ArrayList; +import java.util.Collections; +import java.util.List; + +import static java.util.stream.Collectors.toList; +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class PhenodigmModelScorerTest { + + private OntologyService ontologyService = TestPriorityServiceFactory.TEST_ONTOLOGY_SERVICE; + private PhenotypeMatchService priorityService = new PhenotypeMatchService(ontologyService); + + private Model makeBestHumanModel(PhenotypeMatcher referenceOrganismPhenotypeMatcher) { + List exactHumanPhenotypes = getBestMatchedPhenotypes(referenceOrganismPhenotypeMatcher); + return new GeneDiseaseModel("DISEASE:1", Organism.HUMAN, 12345, "GENE1", "DISEASE:1", "disease", exactHumanPhenotypes); + } + + private Model makeBestMouseModel(PhenotypeMatcher mouseOrganismPhenotypeMatcher) { + List exactMousePhenotypes = getBestMatchedPhenotypes(mouseOrganismPhenotypeMatcher); + return new GeneOrthologModel("MOUSE:1", Organism.MOUSE, 12345, "GENE1", "MGI:12345", "gene1", exactMousePhenotypes); + } + + private Model makeBestFishModel(PhenotypeMatcher fishOrganismPhenotypeMatcher) { + List exactFishPhenotypes = getBestMatchedPhenotypes(fishOrganismPhenotypeMatcher); + return new GeneOrthologModel("FISH:1", Organism.FISH, 12345, "GENE1", "ZFIN:12345", "gene-1", exactFishPhenotypes); + } + + private List getBestMatchedPhenotypes(PhenotypeMatcher organismPhenotypeMatcher) { + return organismPhenotypeMatcher.getBestPhenotypeMatches() + .stream() + .map(PhenotypeMatch::getMatchPhenotypeId) + .collect(toList()); + } + + @Test + public void testScoreModelNoPhenotypesNoMatches() { + PhenotypeMatcher emptyMatches = new CrossSpeciesPhenotypeMatcher(Organism.HUMAN, Collections.emptyMap()); + + ModelScorer instance = PhenodigmModelScorer.forSameSpecies(emptyMatches); + + Model model = new GeneDiseaseModel("DISEASE:1", Organism.HUMAN, 12345, "GENE1", "DISEASE:1", "disease", Collections.emptyList()); + + ModelPhenotypeMatch result = instance.scoreModel(model); + + System.out.println(result); + assertThat(result.getScore(), equalTo(0.0)); + } + + @Test + public void testScoreModelNoMatch() { + List queryTerms = ImmutableList.copyOf(ontologyService.getHpoTerms()); + PhenotypeMatcher referenceOrganismPhenotypeMatcher = priorityService.getHumanPhenotypeMatcherForTerms(queryTerms); + + ModelScorer instance = PhenodigmModelScorer.forSameSpecies(referenceOrganismPhenotypeMatcher); + + PhenotypeTerm noMatchTerm = PhenotypeTerm.of("HP:000000", "No term"); + //The model should have no phenotypes in common with the query set. + assertThat(queryTerms.contains(noMatchTerm), is(false)); + Model model = new GeneDiseaseModel("DISEASE:2", Organism.HUMAN, 12345, "GENE2", "DISEASE:2", "disease 2", Collections.singletonList(noMatchTerm.getId())); + ModelPhenotypeMatch result = instance.scoreModel(model); + + System.out.println(result); + assertThat(result.getScore(), equalTo(0.0)); + assertThat(result.getBestPhenotypeMatches().isEmpty(), is(true)); + } + + @Test + public void testScoreModelPerfectMatch() { + List queryTerms = ImmutableList.copyOf(ontologyService.getHpoTerms()); + PhenotypeMatcher referenceOrganismPhenotypeMatcher = priorityService.getHumanPhenotypeMatcherForTerms(queryTerms); + + ModelScorer instance = PhenodigmModelScorer.forSameSpecies(referenceOrganismPhenotypeMatcher); + + Model model = makeBestHumanModel(referenceOrganismPhenotypeMatcher); + ModelPhenotypeMatch result = instance.scoreModel(model); + + System.out.println(result); + assertThat(result.getScore(), equalTo(1.0)); + } + + @Test + public void testScoreModelPartialMatch() { + + List queryTerms = ImmutableList.copyOf(ontologyService.getHpoTerms()); + PhenotypeMatcher referenceOrganismPhenotypeMatcher = priorityService.getHumanPhenotypeMatcherForTerms(queryTerms); + + ModelScorer instance = PhenodigmModelScorer.forSameSpecies(referenceOrganismPhenotypeMatcher); + + List twoExactPhenotypeMatches = queryTerms.stream().limit(2).map(PhenotypeTerm::getId).collect(toList()); + + Model model = new GeneDiseaseModel("DISEASE:1", Organism.HUMAN, 12345, "GENE1", "DISEASE:1", "disease", twoExactPhenotypeMatches); + ModelPhenotypeMatch result = instance.scoreModel(model); + + System.out.println(result); + assertThat(result.getScore(), equalTo(0.732228059966757)); + } + + @Test + public void testScoreModelPerfectMatchModelAndUnmatchedQueryPhenotype() { + List queryTerms = new ArrayList<>(ontologyService.getHpoTerms()); + queryTerms.add(PhenotypeTerm.of("HP:000000", "No match")); + PhenotypeMatcher referenceOrganismPhenotypeMatcher = priorityService.getHumanPhenotypeMatcherForTerms(queryTerms); + + ModelScorer instance = PhenodigmModelScorer.forSameSpecies(referenceOrganismPhenotypeMatcher); + + Model model = makeBestHumanModel(referenceOrganismPhenotypeMatcher); + ModelPhenotypeMatch result = instance.scoreModel(model); + + System.out.println(result); + assertThat(result.getScore(), equalTo(1.0)); + } + + @Test + public void testScoreSingleCrossSpecies() { + + List queryTerms = ImmutableList.copyOf(ontologyService.getHpoTerms()); + PhenotypeMatcher mouseOrganismPhenotypeMatcher = priorityService.getMousePhenotypeMatcherForTerms(queryTerms); + + ModelScorer mousePhiveModelScorer = PhenodigmModelScorer.forSingleCrossSpecies(mouseOrganismPhenotypeMatcher); + + Model model = makeBestMouseModel(mouseOrganismPhenotypeMatcher); + + ModelPhenotypeMatch result = mousePhiveModelScorer.scoreModel(model); + System.out.println(result); + assertThat(result.getScore(), equalTo(1.0)); + } + + @Test + public void testScoreMultiCrossSpecies() { + + List queryTerms = ImmutableList.copyOf(ontologyService.getHpoTerms()); + queryTerms.forEach(System.out::println); + + PhenotypeMatcher referenceOrganismPhenotypeMatcher = priorityService.getHumanPhenotypeMatcherForTerms(queryTerms); + QueryPhenotypeMatch bestQueryPhenotypeMatch = referenceOrganismPhenotypeMatcher.getQueryPhenotypeMatch(); + + + ModelScorer diseaseModelScorer = PhenodigmModelScorer.forMultiCrossSpecies(bestQueryPhenotypeMatch, referenceOrganismPhenotypeMatcher); + Model disease = makeBestHumanModel(referenceOrganismPhenotypeMatcher); + ModelPhenotypeMatch diseaseResult = diseaseModelScorer.scoreModel(disease); + System.out.println(diseaseResult); + assertThat(diseaseResult.getScore(), equalTo(1.0)); + + + PhenotypeMatcher mouseOrganismPhenotypeMatcher = priorityService.getMousePhenotypeMatcherForTerms(queryTerms); + ModelScorer mouseModelScorer = PhenodigmModelScorer.forMultiCrossSpecies(bestQueryPhenotypeMatch, mouseOrganismPhenotypeMatcher); + Model mouse = makeBestMouseModel(mouseOrganismPhenotypeMatcher); + ModelPhenotypeMatch mouseResult = mouseModelScorer.scoreModel(mouse); + System.out.println(mouseResult); + assertThat(mouseResult.getScore(), equalTo(0.9718528996668048)); + + + PhenotypeMatcher fishOrganismPhenotypeMatcher = priorityService.getFishPhenotypeMatcherForTerms(queryTerms); + ModelScorer fishModelScorer = PhenodigmModelScorer.forMultiCrossSpecies(bestQueryPhenotypeMatch, fishOrganismPhenotypeMatcher); + Model fish = makeBestFishModel(fishOrganismPhenotypeMatcher); + ModelPhenotypeMatch fishResult = fishModelScorer.scoreModel(fish); + System.out.println(fishResult); + assertThat(fishResult.getScore(), equalTo(0.628922135363762)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchServiceTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchServiceTest.java new file mode 100644 index 000000000..f614a1b4f --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchServiceTest.java @@ -0,0 +1,120 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.service.OntologyService; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; + +import java.util.Collections; +import java.util.List; +import java.util.Objects; +import java.util.stream.Stream; + +import static java.util.stream.Collectors.toList; +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class PhenotypeMatchServiceTest { + + private OntologyService ontologyService = TestPriorityServiceFactory.TEST_ONTOLOGY_SERVICE; + + private List getAllHpoIds() { + return ontologyService.getHpoTerms().stream().map(PhenotypeTerm::getId).collect(toList()); + } + + @Test + public void testIntegrationWithModelScorer() { + PhenotypeMatchService instance = new PhenotypeMatchService(ontologyService); + List hpoIds = getAllHpoIds(); + + List queryTerms = instance.makePhenotypeTermsFromHpoIds(hpoIds); + PhenotypeMatcher hpHpQueryMatcher = instance.getHumanPhenotypeMatcherForTerms(queryTerms); + + ModelScorer modelScorer = PhenodigmModelScorer.forSameSpecies(hpHpQueryMatcher); + + Model exactMatch = new TestModel("EXACT_MATCH", hpoIds); + Model noMatch = new TestModel("NO_MATCH", Collections.emptyList()); + + List matches = Stream.of(exactMatch, noMatch) + .map(modelScorer::scoreModel) + .sorted() + .collect(toList()); + + ModelPhenotypeMatch topScore = matches.get(0); + assertThat(topScore.getScore(), equalTo(1d)); + assertThat(topScore.getModel(), equalTo(exactMatch)); + + ModelPhenotypeMatch bottomScore = matches.get(1); + assertThat(bottomScore.getScore(), equalTo(0d)); + assertThat(bottomScore.getModel(), equalTo(noMatch)); + + } + + /** + * Simple class to enable testing the ModelScorer. + */ + private class TestModel implements Model { + + private final String id; + private final List phenotypes; + + public TestModel(String id, List phenotypes) { + this.id = id; + this.phenotypes = phenotypes; + } + + @Override + public String getId() { + return id; + } + + @Override + public List getPhenotypeIds() { + return phenotypes; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + TestModel testModel = (TestModel) o; + return Objects.equals(id, testModel.id) && + Objects.equals(phenotypes, testModel.phenotypes); + } + + @Override + public int hashCode() { + return Objects.hash(id, phenotypes); + } + + @Override + public String toString() { + return "TestModel{" + + "id='" + id + '\'' + + ", phenotypes=" + phenotypes + + '}'; + } + } +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchTest.java new file mode 100644 index 000000000..94601f116 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeMatchTest.java @@ -0,0 +1,145 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype; + +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PhenotypeMatchTest { + + private PhenotypeMatch instance; + + private PhenotypeTerm lcs; + private PhenotypeTerm queryPhenotype; + private PhenotypeTerm matchPhenotype; + private double ic; + private double simJ; + private double score; + + @Before + public void setUp() { + lcs = PhenotypeTerm.of("ID:12345", "nose"); + queryPhenotype = PhenotypeTerm.of("ID:12344", "big nose"); + matchPhenotype = PhenotypeTerm.of("ID:12355", "little nose"); + ic = 1.00; + simJ = 0.8; + score = 1.26; + + instance = PhenotypeMatch.builder().query(queryPhenotype).match(matchPhenotype).lcs(lcs).ic(ic).simj(simJ).score(score).build(); + } + + @Test + public void testGetQueryPhenotypeId() { + assertThat(instance.getQueryPhenotypeId(), equalTo(queryPhenotype.getId())); + } + + @Test + public void testGetQueryPhenotypeIdForNullInstance() { + instance = PhenotypeMatch.builder().query(null).match(matchPhenotype).lcs(lcs).ic(ic).simj(simJ).score(score).build(); + assertThat(instance.getQueryPhenotypeId(), equalTo("null")); + } + + @Test + public void testGetQueryPhenotype() { + assertThat(instance.getQueryPhenotype(), equalTo(queryPhenotype)); + } + + @Test + public void testGetMatchPhenotypeId() { + assertThat(instance.getMatchPhenotypeId(), equalTo(matchPhenotype.getId())); + } + + @Test + public void testGetMatchPhenotypeIdForNullInstance() { + instance = PhenotypeMatch.builder().query(queryPhenotype).match(null).lcs(lcs).ic(ic).simj(simJ).score(score).build(); + assertThat(instance.getMatchPhenotypeId(), equalTo("null")); + } + + @Test + public void testGetMatchPhenotype() { + assertThat(instance.getMatchPhenotype(), equalTo(matchPhenotype)); + } + + @Test + public void testGetLcs() { + assertThat(instance.getLcs(), equalTo(lcs)); + } + + @Test + public void testGetIc() { + assertThat(instance.getIc(), equalTo(ic)); + } + + @Test + public void testGetSimJ() { + assertThat(instance.getSimJ(), equalTo(simJ)); + } + + @Test + public void testGetScore() { + assertThat(instance.getScore(), equalTo(score)); + } + + @Test + public void testHashCode() { + assertThat(instance.hashCode(), equalTo(instance.hashCode())); + } + + @Test + public void testEquals() { + assertThat(instance, equalTo(instance)); + } + + @Test + public void testToString() { + assertThat(instance.toString().isEmpty(), is(false)); + } + + @Test + public void testJsonOutput() { + ObjectMapper mapper = new ObjectMapper(); + mapper.configure(SerializationFeature.INDENT_OUTPUT, true); + mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); + try { + String jsonString = mapper.writeValueAsString(instance); + System.out.println(jsonString); + } catch (JsonProcessingException ex) { + System.out.println(ex); + } + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeTermTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeTermTest.java new file mode 100644 index 000000000..e52a5ac9e --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/PhenotypeTermTest.java @@ -0,0 +1,104 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype; + +import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PhenotypeTermTest { + + private PhenotypeTerm instance; + + private String id; + private String label; + + @Before + public void setUp() { + id = "ID:12344"; + label = "big nose"; + instance = PhenotypeTerm.of(id, label); + } + + @Test + public void testGetId() { + assertThat(instance.getId(), equalTo(id)); + } + + @Test + public void testGetTerm() { + assertThat(instance.getLabel(), equalTo(label)); + } + + @Test + public void testHashCode() { + assertThat(instance.hashCode(), equalTo(instance.hashCode())); + } + + @Test + public void testEquals() { + assertThat(instance, equalTo(instance)); + } + + @Test + public void testEqualsOther() { + PhenotypeTerm other = PhenotypeTerm.of(id, label); + assertThat(instance, equalTo(other)); + } + + @Test + public void testNotEqualsOther() { + PhenotypeTerm other = PhenotypeTerm.of("other", label); + assertThat(instance, not(equalTo(other))); + } + + @Test + public void testToString() { + assertThat(instance.toString().isEmpty(), is(false)); + } + + @Test + public void testOf() { + assertThat(PhenotypeTerm.of("id", "label"), equalTo(PhenotypeTerm.of("id", "label"))); + assertThat(PhenotypeTerm.of("id", "label").isPresent(), is(true)); + assertThat(PhenotypeTerm.of("id", "label").notPresent(), is(false)); + assertThat(PhenotypeTerm.of("otherId", "otherLabel"), not(equalTo(PhenotypeTerm.of("id", "label")))); + } + + @Test + public void testNotOf() { + assertThat(PhenotypeTerm.notOf("id", "label"), equalTo(PhenotypeTerm.notOf("id", "label"))); + assertThat(PhenotypeTerm.notOf("id", "label"), not(equalTo(PhenotypeTerm.of("id", "label")))); + assertThat(PhenotypeTerm.notOf("id", "label").isPresent(), is(false)); + assertThat(PhenotypeTerm.notOf("id", "label").notPresent(), is(true)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/QueryPhenotypeMatchTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/QueryPhenotypeMatchTest.java new file mode 100644 index 000000000..d2edeb776 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/QueryPhenotypeMatchTest.java @@ -0,0 +1,133 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype; + +import com.google.common.collect.Sets; +import org.junit.Before; +import org.junit.Test; + +import java.util.*; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class QueryPhenotypeMatchTest { + + private QueryPhenotypeMatch instance; + + //No phenotype match + private final PhenotypeTerm noMatchTerm = PhenotypeTerm.of("HP:0000000", "No match phenotype"); + + //Nose phenotypes + private final PhenotypeTerm bigNose = PhenotypeTerm.of("HP:0000001", "Big nose"); + private final PhenotypeTerm nose = PhenotypeTerm.of("HP:0000002", "Nose"); + private final PhenotypeTerm littleNose = PhenotypeTerm.of("HP:0000003", "Little nose"); + + private final PhenotypeMatch perfectNoseMatch = PhenotypeMatch.builder().query(bigNose).match(bigNose).lcs(bigNose).ic(2.0).simj(1.0).score(4.0).build(); + private final PhenotypeMatch noseMatch = PhenotypeMatch.builder().query(bigNose).match(littleNose).lcs(nose).ic(1.0).simj(0.5).score(1.0).build(); + + //Toe phenotypes + private final PhenotypeTerm toe = PhenotypeTerm.of("HP:0000004", "Toe"); + private final PhenotypeTerm bigToe = PhenotypeTerm.of("HP:0000005", "Big toe"); + private final PhenotypeTerm crookedToe = PhenotypeTerm.of("HP:0000006", "Crooked toe"); + private final PhenotypeTerm longToe = PhenotypeTerm.of("HP:0000007", "Long toe"); + + private final PhenotypeMatch bestToeMatch = PhenotypeMatch.builder().query(bigToe).match(longToe).lcs(toe).ic(1.0).simj(1.0).score(2.0).build(); + private final PhenotypeMatch bigToeCrookedToeMatch = PhenotypeMatch.builder().query(bigToe).match(crookedToe).lcs(toe).ic(1.0).simj(1.0).score(1.5).build(); + + private final Set bestMatches = Sets.newHashSet(perfectNoseMatch, bestToeMatch); + + @Before + public void setUp() { + Map> phenotypeMatches = new LinkedHashMap<>(); + phenotypeMatches.put(bigNose, Sets.newHashSet(perfectNoseMatch, noseMatch)); + phenotypeMatches.put(bigToe, Sets.newHashSet(bestToeMatch, bigToeCrookedToeMatch)); + + instance = new QueryPhenotypeMatch(Organism.HUMAN, phenotypeMatches); + } + + @Test + public void testWithNoPhenotypeMatch() { + Map> noPhenotypeMatches = new LinkedHashMap<>(); + noPhenotypeMatches.put(noMatchTerm, Collections.emptySet()); + QueryPhenotypeMatch noMatchModel = new QueryPhenotypeMatch(Organism.HUMAN, noPhenotypeMatches); + + assertThat(noMatchModel.getBestPhenotypeMatches(), equalTo(Collections.emptySet())); + assertThat(noMatchModel.getOrganism(), equalTo(Organism.HUMAN)); + assertThat(noMatchModel.getBestAvgScore(), equalTo(0.0)); + assertThat(noMatchModel.getMaxMatchScore(), equalTo(0.0)); + } + + @Test + public void testWithSomeEmptyPhenotypeMatches() { + Map> phenotypeMatches = new LinkedHashMap<>(); + phenotypeMatches.put(bigNose, Sets.newHashSet(perfectNoseMatch, noseMatch)); + phenotypeMatches.put(noMatchTerm, Collections.emptySet()); + QueryPhenotypeMatch matchModel = new QueryPhenotypeMatch(Organism.HUMAN, phenotypeMatches); + + assertThat(matchModel.getBestPhenotypeMatches(), equalTo(Sets.newHashSet(perfectNoseMatch))); + assertThat(matchModel.getOrganism(), equalTo(Organism.HUMAN)); + assertThat(matchModel.getBestAvgScore(), equalTo(2d)); + assertThat(matchModel.getMaxMatchScore(), equalTo(4d)); + } + + @Test + public void testGetOrganism() throws Exception { + assertThat(instance.getOrganism(), equalTo(Organism.HUMAN)); + } + + @Test + public void testGetQueryTerms() { + assertThat(instance.getQueryTerms(), equalTo(Arrays.asList(bigNose, bigToe))); + } + + @Test + public void testGetBestPhenotypeMatches() throws Exception { + assertThat(instance.getBestPhenotypeMatches(), equalTo(bestMatches)); + } + + @Test + public void testGetTheoreticalMaxMatchScore() { + assertThat(instance.getMaxMatchScore(), equalTo(4d)); + } + + @Test + public void testGetTheoreticalMaxMatchScoreNoMatches() { + QueryPhenotypeMatch noMatchesInstance = new QueryPhenotypeMatch(Organism.HUMAN, Collections.emptyMap()); + assertThat(noMatchesInstance.getMaxMatchScore(), equalTo(0d)); + } + + @Test + public void testGetBestAverageScore() { + double expected = (bestToeMatch.getScore() + perfectNoseMatch.getScore()) / 2d; + assertThat(instance.getBestAvgScore(), equalTo(expected)); + } + + @Test + public void testGetBestAverageScoreNoMatches() { + QueryPhenotypeMatch noMatchesInstance = new QueryPhenotypeMatch(Organism.HUMAN, Collections.emptyMap()); + assertThat(noMatchesInstance.getBestAvgScore(), equalTo(0d)); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/dao/HumanPhenotypeOntologyDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/dao/HumanPhenotypeOntologyDaoTest.java new file mode 100644 index 000000000..638504115 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/dao/HumanPhenotypeOntologyDaoTest.java @@ -0,0 +1,168 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.dao; + +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.prioritisers.config.TestDataSourceConfig; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.jdbc.Sql; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; + +import java.util.*; +import java.util.Map.Entry; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(classes = {TestDataSourceConfig.class, HumanPhenotypeOntologyDao.class}) +@Sql(scripts = {"" + + "file:src/test/resources/sql/create_hpo.sql", + "file:src/test/resources/sql/humanPhenotypeOntologyDaoTestData.sql"}) +public class HumanPhenotypeOntologyDaoTest { + + @Autowired + private HumanPhenotypeOntologyDao instance; + + private Set allHpoTerms; + private Map allHpoAsStrings; + + private final PhenotypeTerm multicysticKidneyDysplasia = PhenotypeTerm.of("HP:0000003", "Multicystic kidney dysplasia"); + private Set phenotypeMatches; + + @Before + public void setUp() { + allHpoAsStrings = new HashMap<>(); + allHpoAsStrings.put("HP:0000001", "All"); + allHpoAsStrings.put("HP:0000002", "Abnormality of body height"); + allHpoAsStrings.put("HP:0000003", "Multicystic kidney dysplasia"); + allHpoAsStrings.put("HP:0000005", "Mode of inheritance"); + allHpoAsStrings.put("HP:0000006", "Autosomal dominant inheritance"); + + phenotypeMatches = new LinkedHashSet<>(); +// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM +//0.769231 5.347805 2.028225214383722 HP:0100877 Renal diverticulum HP:0000107 Renal cyst + PhenotypeTerm renalDiverticulum = PhenotypeTerm.of("HP:0100877", "Renal diverticulum"); + PhenotypeTerm renalCyst = PhenotypeTerm.of("HP:0000107", "Renal cyst"); + PhenotypeMatch diverticulumMatch = PhenotypeMatch.builder() + .query(multicysticKidneyDysplasia) + .match(renalDiverticulum) + .lcs(renalCyst) + .simj(0.769231) + .ic(5.347805) + .score(2.028225214383722) + .build(); + phenotypeMatches.add(diverticulumMatch); + +// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM +//0.380952 3.020727 1.0727310768221452 HP:0100881 Congenital mesoblastic nephroma HP:0000077 Abnormality of the kidney + PhenotypeTerm mesoblasticNephroma = PhenotypeTerm.of("HP:0100881", "Congenital mesoblastic nephroma"); + PhenotypeTerm kidneyAbnormality = PhenotypeTerm.of("HP:0000077", "Abnormality of the kidney"); + PhenotypeMatch mesoblasticMatch = PhenotypeMatch.builder() + .query(multicysticKidneyDysplasia) + .match(mesoblasticNephroma) + .lcs(kidneyAbnormality) + .simj(0.380952) + .ic(3.020727) + .score(1.0727310768221452) + .build(); + phenotypeMatches.add(mesoblasticMatch); + +// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM +//0.75 3.442544 1.6068316612497417 HP:0100880 Nephrogenic rest HP:0012210 Abnormal renal morphology + PhenotypeTerm nephrogenicRest = PhenotypeTerm.of("HP:0100880", "Nephrogenic rest"); + PhenotypeTerm abnormalRenalMorphology = PhenotypeTerm.of("HP:0012210", "Abnormal renal morphology"); + PhenotypeMatch nephrogenicRestMatch = PhenotypeMatch.builder() + .query(multicysticKidneyDysplasia) + .match(nephrogenicRest) + .lcs(abnormalRenalMorphology) + .simj(0.75) + .ic(3.442544) + .score(1.6068316612497417) + .build(); + phenotypeMatches.add(nephrogenicRestMatch); + +// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM +//0.642857 3.442544 1.48763690115246 HP:0001917 Renal amyloidosis HP:0012210 Abnormal renal morphology + PhenotypeTerm renalAmyloidosis = PhenotypeTerm.of("HP:0001917", "Renal amyloidosis"); + PhenotypeMatch renalAmyloidosisMatch = PhenotypeMatch.builder() + .query(multicysticKidneyDysplasia) + .match(renalAmyloidosis) + .lcs(abnormalRenalMorphology) + .simj(0.642857) + .ic(3.442544) + .score(1.48763690115246) + .build(); + phenotypeMatches.add(renalAmyloidosisMatch); + +// SIMJ IC SCORE HP_ID_HIT HP_HIT_TERM LCS_ID LCS_TERM +//0.533333 3.020727 1.269272768407093 HP:0001919 Acute kidney injury HP:0000077 Abnormality of the kidney + PhenotypeTerm acuteKidneyInjury = PhenotypeTerm.of("HP:0001919", "Acute kidney injury"); + PhenotypeMatch acuteKidneyInjuryMatch = PhenotypeMatch.builder() + .query(multicysticKidneyDysplasia) + .match(acuteKidneyInjury) + .lcs(kidneyAbnormality) + .ic(3.020727) + .simj(0.533333) + .score(1.269272768407093) + .build(); + phenotypeMatches.add(acuteKidneyInjuryMatch); + + allHpoTerms = new HashSet<>(); + for (Entry termAsStrings : allHpoAsStrings.entrySet()) { + allHpoTerms.add(PhenotypeTerm.of(termAsStrings.getKey(), termAsStrings.getValue())); + } + } + + @Test + public void testGetAllTerms() { + assertThat(instance.getAllTerms(), equalTo(allHpoTerms)); + } + + @Test + public void testGetPhenotypeMatchesForNonExistentHpoTermReturnsEmptySet() { + PhenotypeTerm nonExistentTerm = PhenotypeTerm.of("", ""); + Set matches = instance.getPhenotypeMatchesForHpoTerm(nonExistentTerm); + assertThat(matches.isEmpty(), is(true)); + } + + @Test + public void testGetPhenotypeMatchesForHpoTerm() { + Set matches = instance.getPhenotypeMatchesForHpoTerm(multicysticKidneyDysplasia); + assertThat(matches.isEmpty(), is(false)); + assertThat(matches, equalTo(phenotypeMatches)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyServiceImplTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyServiceImplTest.java new file mode 100644 index 000000000..621a82a70 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/service/OntologyServiceImplTest.java @@ -0,0 +1,140 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.phenotype.service; + +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.InjectMocks; +import org.mockito.Mock; +import org.mockito.Mockito; +import org.mockito.runners.MockitoJUnitRunner; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.phenotype.dao.HumanPhenotypeOntologyDao; +import org.monarchinitiative.exomiser.core.phenotype.dao.MousePhenotypeOntologyDao; +import org.monarchinitiative.exomiser.core.phenotype.dao.ZebraFishPhenotypeOntologyDao; + +import java.util.*; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(MockitoJUnitRunner.class) +public class OntologyServiceImplTest { + + @InjectMocks + private OntologyServiceImpl instance; + + @Mock + private HumanPhenotypeOntologyDao mockHpoDao; + @Mock + private MousePhenotypeOntologyDao mockMpoDao; + @Mock + private ZebraFishPhenotypeOntologyDao mockZpoDao; + + private List diseaseHpoIds; + private Set hpoTerms; + private Set mpoTerms; + private Set zpoTerms; + + private final PhenotypeTerm fingerJointHyperExtensibility = PhenotypeTerm.of("HP:0001187", "Hyperextensibility of the finger joints"); + private final PhenotypeTerm conjunctivalNodule = PhenotypeTerm.of("HP:0009903", "Conjunctival nodule"); + private final PhenotypeTerm cleftHelix = PhenotypeTerm.of("HP:0009902", "Cleft helix"); + private final PhenotypeTerm thinEarHelix = PhenotypeTerm.of("HP:0009905", "Thin ear helix"); + + @Before + public void setUp() { + diseaseHpoIds = new ArrayList<>(); + diseaseHpoIds.addAll(Arrays.asList("HP:000000", "HP:000001", "HP:000002", "HP:000003", "HP:000004")); + + hpoTerms = new HashSet<>(); + setUpHpoTerms(); + + setUpDaoMocks(); + } + + private void setUpHpoTerms() { + hpoTerms.add(fingerJointHyperExtensibility); + hpoTerms.add(conjunctivalNodule); + hpoTerms.add(cleftHelix); + hpoTerms.add(thinEarHelix); + } + + private void setUpDaoMocks() { + Mockito.when(mockHpoDao.getAllTerms()).thenReturn(hpoTerms); + Mockito.when(mockHpoDao.getPhenotypeMatchesForHpoTerm(Mockito.any())).thenReturn(Collections.emptySet()); + + Mockito.when(mockMpoDao.getAllTerms()).thenReturn(mpoTerms); + Mockito.when(mockMpoDao.getPhenotypeMatchesForHpoTerm(Mockito.any())).thenReturn(Collections.emptySet()); + + Mockito.when(mockZpoDao.getAllTerms()).thenReturn(zpoTerms); + Mockito.when(mockZpoDao.getPhenotypeMatchesForHpoTerm(Mockito.any())).thenReturn(Collections.emptySet()); + } + + @Test + public void testGetHpoTerms() { + assertThat(instance.getHpoTerms(), equalTo(hpoTerms)); + } + + @Test + public void testGetMpoTerms() { + assertThat(instance.getMpoTerms(), equalTo(mpoTerms)); + } + + @Test + public void testGetZpoTerms() { + assertThat(instance.getZpoTerms(), equalTo(zpoTerms)); + } + + @Test + public void canGetPhenotypeMatchesForHpoTerm() { + assertThat(instance.getHpoMatchesForHpoTerm(cleftHelix), equalTo(Collections.emptySet())); + } + + @Test + public void canGetPhenotypeMatchesForMpoTerm() { + assertThat(instance.getMpoMatchesForHpoTerm(cleftHelix), equalTo(Collections.emptySet())); + } + + @Test + public void canGetPhenotypeMatchesForZpoTerm() { + assertThat(instance.getZpoMatchesForHpoTerm(cleftHelix), equalTo(Collections.emptySet())); + } + + @Test + public void testReturnsPhenotypeTermForGivenHpoId() { + assertThat(instance.getPhenotypeTermForHpoId(fingerJointHyperExtensibility.getId()), equalTo(fingerJointHyperExtensibility)); + } + + @Test + public void testReturnsNullForGivenHpoIdWhenHpoIdIsUnrecognised() { + assertThat(instance.getPhenotypeTermForHpoId("invalidId"), equalTo(null)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/service/TestOntologyService.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/service/TestOntologyService.java new file mode 100644 index 000000000..2946c5c5e --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/phenotype/service/TestOntologyService.java @@ -0,0 +1,131 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.phenotype.service; + +import com.google.common.collect.ImmutableSet; +import com.google.common.collect.Sets; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; + +import java.util.Collections; +import java.util.List; +import java.util.Map; +import java.util.Set; + +/** + * Test helper to provide real, canned data for a small set of + * @author Jules Jacobsen + */ +public class TestOntologyService implements OntologyService { + + + private final Map hpIdPhenotypeTerms; + + private final Map> humanHumanMappings; + private final Map> humanMouseMappings; + private final Map> humanFishMappings; + + private TestOntologyService(Builder builder) { + this.hpIdPhenotypeTerms = builder.hpIdPhenotypeTerms; + this.humanHumanMappings = builder.humanHumanMappings; + this.humanMouseMappings = builder.humanMouseMappings; + this.humanFishMappings = builder.humanFishMappings; + } + + @Override + public Set getHpoTerms() { + return ImmutableSet.copyOf(hpIdPhenotypeTerms.values()); + } + + @Override + public Set getMpoTerms() { + return Collections.emptySet(); + } + + @Override + public Set getZpoTerms() { + return Collections.emptySet(); + } + + @Override + public Set getHpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + List matches = humanHumanMappings.get(hpoTerm); + return (matches == null) ? Collections.emptySet() : Sets.newHashSet(matches); + } + + @Override + public Set getMpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + List matches = humanMouseMappings.get(hpoTerm); + return (matches == null) ? Collections.emptySet() : Sets.newHashSet(matches); + } + + @Override + public Set getZpoMatchesForHpoTerm(PhenotypeTerm hpoTerm) { + List matches = humanFishMappings.get(hpoTerm); + return (matches == null) ? Collections.emptySet() : Sets.newHashSet(matches); + } + + @Override + public PhenotypeTerm getPhenotypeTermForHpoId(String hpoId) { + return hpIdPhenotypeTerms.getOrDefault(hpoId, PhenotypeTerm.of(hpoId, "Not set")); + } + + public static Builder builder() { + return new Builder(); + } + + public static class Builder { + + private Map hpIdPhenotypeTerms = Collections.emptyMap(); + + private Map> humanHumanMappings = Collections.emptyMap(); + private Map> humanMouseMappings = Collections.emptyMap(); + private Map> humanFishMappings = Collections.emptyMap(); + + + private Builder() { + } + + public Builder setHpIdPhenotypeTerms(Map hpIdPhenotypeTerms) { + this.hpIdPhenotypeTerms = hpIdPhenotypeTerms; + return this; + } + + public Builder setHumanHumanMappings(Map> humanHumanMappings) { + this.humanHumanMappings = humanHumanMappings; + return this; + } + + public Builder setHumanMouseMappings(Map> humanMouseMappings) { + this.humanMouseMappings = humanMouseMappings; + return this; + } + + public Builder setHumanFishMappings(Map> humanFishMappings) { + this.humanFishMappings = humanFishMappings; + return this; + } + + public TestOntologyService build() { + return new TestOntologyService(this); + } + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriorityScoreTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriorityScoreTest.java new file mode 100644 index 000000000..e590894b7 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/ExomeWalkerPriorityScoreTest.java @@ -0,0 +1,62 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen (jules.jacobsen@sanger.ac.uk) + */ +public class ExomeWalkerPriorityScoreTest { + + private ExomeWalkerPriorityResult instance; + private final double score = 1.0; + + @Before + public void setUp() { + instance = new ExomeWalkerPriorityResult(0, "", score); + } + + @Test + public void testGetPriorityType() { + assertThat(instance.getPriorityType(), equalTo(PriorityType.EXOMEWALKER_PRIORITY)); + } + + @Test + public void testGetScore() { + assertThat(instance.getScore(), equalTo(score)); + } + + @Test + public void testGetHTMLCode() { + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhiveOptionsTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhiveOptionsTest.java new file mode 100644 index 000000000..d7c29e8f2 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhiveOptionsTest.java @@ -0,0 +1,402 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.prioritisers.HiPhiveOptions.InvalidRunParameterException; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneDiseaseModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; + +import java.util.Collections; +import java.util.EnumSet; + +import static org.hamcrest.CoreMatchers.*; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class HiPhiveOptionsTest { + + private final GeneModel model = new GeneDiseaseModel("OMIM:101600", Organism.HUMAN, 12345, "Gene1", "DISEASE:1", "Test disease", Collections.emptyList()); + + private void assertAllRunParamsAreTrue(HiPhiveOptions hiPhiveOptions) { + assertThat(hiPhiveOptions.runHuman(), is(true)); + assertThat(hiPhiveOptions.runMouse(), is(true)); + assertThat(hiPhiveOptions.runFish(), is(true)); + assertThat(hiPhiveOptions.runPpi(), is(true)); + } + + @Test + public void testReturnsFalseWithDefaultConstructor() { + HiPhiveOptions instance = HiPhiveOptions.builder().build(); + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void testDefault() { + HiPhiveOptions instance = HiPhiveOptions.DEFAULT; + assertDefaultOptions(instance); + } + + @Test + public void testBuilderDefaults() { + HiPhiveOptions instance = HiPhiveOptions.builder().build(); + assertDefaultOptions(instance); + } + + private void assertDefaultOptions(HiPhiveOptions instance) { + assertThat(instance.isBenchmarkingEnabled(), is(false)); + assertThat(instance.runHuman(), is(true)); + assertThat(instance.runMouse(), is(true)); + assertThat(instance.runFish(), is(true)); + assertThat(instance.runPpi(), is(true)); + } + + @Test + public void testAllRunParametersAreTrueUsingParameterisedConstructorAndEmptyRunParameters() { + HiPhiveOptions instance = HiPhiveOptions.builder().runParams("").build(); + assertAllRunParamsAreTrue(instance); + } + + @Test(expected = InvalidRunParameterException.class) + public void testThrowsInvalidRunParameterExceptionWhenEncountersUnrecognisedRunParameter() { + HiPhiveOptions instance = HiPhiveOptions.builder().runParams("floorb").build(); + } + + @Test + public void testSetsRunHumanTrueAllOthersFalseWhenOnlyHumanSpecifiedInParameters() { + HiPhiveOptions instance = HiPhiveOptions.builder().runParams("human").build(); + assertThat(instance.runHuman(), is(true)); + assertThat(instance.runMouse(), is(false)); + assertThat(instance.runFish(), is(false)); + assertThat(instance.runPpi(), is(false)); + } + + @Test + public void testSetsRunHumanMouseTrueAllOthersFalseWhenOnlyHumanMouseSpecifiedInParameters() { + HiPhiveOptions instance = HiPhiveOptions.builder().runParams("human,mouse").build(); + assertThat(instance.runHuman(), is(true)); + assertThat(instance.runMouse(), is(true)); + assertThat(instance.runFish(), is(false)); + assertThat(instance.runPpi(), is(false)); + } + + @Test + public void testSetsRunHumanMouseFishTrueRunPpiFalseWhenOnlyHumanMouseFishSpecifiedInParameters() { + HiPhiveOptions instance = HiPhiveOptions.builder().runParams("human,mouse,fish").build(); + assertThat(instance.runHuman(), is(true)); + assertThat(instance.runMouse(), is(true)); + assertThat(instance.runFish(), is(true)); + assertThat(instance.runPpi(), is(false)); + } + + @Test + public void testSetsRunHumanMouseFishPpiTrueHumanMouseFishPpiSpecifiedInParameters() { + HiPhiveOptions instance = HiPhiveOptions.builder().runParams("human,mouse,fish,ppi").build(); + assertThat(instance.runHuman(), is(true)); + assertThat(instance.runMouse(), is(true)); + assertThat(instance.runFish(), is(true)); + assertThat(instance.runPpi(), is(true)); + } + + @Test + public void testWillRemoveWhitespaceFromRunParams() { + HiPhiveOptions instance = HiPhiveOptions.builder().runParams("human,mouse,fish , ppi").build(); + assertThat(instance.runHuman(), is(true)); + assertThat(instance.runMouse(), is(true)); + assertThat(instance.runFish(), is(true)); + assertThat(instance.runPpi(), is(true)); + } + + @Test + public void testBuilderRunParams() { + HiPhiveOptions instance = HiPhiveOptions.builder() + .runParams("human,mouse,fish,ppi") + .build(); + assertThat(instance.isBenchmarkingEnabled(), is(false)); + assertThat(instance.runHuman(), is(true)); + assertThat(instance.runMouse(), is(true)); + assertThat(instance.runFish(), is(true)); + assertThat(instance.runPpi(), is(true)); + } + + + @Test + public void testGetDiseaseId() { + String diseaseId = "OMIM:101600"; + HiPhiveOptions instance = HiPhiveOptions.builder() + .diseaseId(diseaseId) + .build(); + assertThat(instance.getDiseaseId(), equalTo(diseaseId)); + } + + @Test + public void testGetCandidateGeneSymbol() { + String candidateGeneSymbol = "Gene1"; + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .build(); + assertThat(instance.getCandidateGeneSymbol(), equalTo(candidateGeneSymbol)); + } + + @Test + public void returnsTrueWhenDiseaseIdMatchesModelIdAndGeneSymbolMatchesModelHumanGeneSymbolForDiseaseModel() { + String diseaseId = "OMIM:101600"; + String candidateGeneSymbol = "Gene1"; + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + assertThat(instance.isBenchmarkHit(model), is(true)); + } + + @Test + public void returnsTrueWhenDiseaseIdMatchesModelIdAndGeneSymbolMatchesModelHumanGeneSymbolForGeneModel() { + String diseaseId = "OMIM:101600"; + String candidateGeneSymbol = "Gene1"; + + GeneModel model = new GeneOrthologModel(diseaseId, Organism.HUMAN, 12345, candidateGeneSymbol, "DISEASE:1", "Test disease", Collections.emptyList()); + + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(true)); + } + + @Test + public void returnsFalseWhenDiseaseIdAndGeneSymbolAreEmpty() { + String diseaseId = ""; + String candidateGeneSymbol = ""; + + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void isBenchmarkingEnabledReturnsFalseWhenDiseaseIdOrGeneSymbolAreEmpty() { + HiPhiveOptions emptyGeneSymbol = HiPhiveOptions.builder() + .candidateGeneSymbol("") + .diseaseId("disease") + .build(); + assertThat(emptyGeneSymbol.isBenchmarkingEnabled(), is(false)); + + HiPhiveOptions emptyDiseaseId = HiPhiveOptions.builder() + .candidateGeneSymbol("candidateGeneSymbol") + .diseaseId("") + .build(); + assertThat(emptyDiseaseId.isBenchmarkingEnabled(), is(false)); + } + + @Test + public void returnsFalseWhenDiseaseIdAndGeneSymbolAreNull() { + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(null) + .diseaseId(null) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void returnsFalseWhenDiseaseIdMatchesModelIdAndGeneSymbolIsEmpty() { + String diseaseId = "OMIM:101600"; + String candidateGeneSymbol = ""; + + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void returnsFalseWhenDiseaseIdMatchesModelIdAndGeneSymbolIsNull() { + String diseaseId = "OMIM:101600"; + String candidateGeneSymbol = null; + + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void returnsFalseWhenGeneSymbolMatchesModelHumanGeneSymbolAndDiseaseIdIsNull() { + String diseaseId = null; + String candidateGeneSymbol = "Gene1"; + + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void returnsFalseWhenGeneSymbolMatchesModelHumanGeneSymbolAndDiseaseIdIsEmpty() { + String diseaseId = ""; + String candidateGeneSymbol = "Gene1"; + + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void returnsFalseWhenModelIdIsNull() { + String diseaseId = "OMIM:101600"; + String candidateGeneSymbol = "Gene1"; + GeneModel model = new GeneDiseaseModel(null, Organism.HUMAN, 12345, candidateGeneSymbol, diseaseId, "Test disease", Collections.emptyList()); + + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void returnsFalseWhenHumanGeneSymbolIsNull() { + String diseaseId = "OMIM:101600"; + String candidateGeneSymbol = "Gene1"; + + GeneModel model = new GeneDiseaseModel(diseaseId, Organism.HUMAN, 12345, null, diseaseId, "Test disease", Collections.emptyList()); + + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol(candidateGeneSymbol) + .diseaseId(diseaseId) + .build(); + + assertThat(instance.isBenchmarkHit(model), is(false)); + } + + @Test + public void testHashCode() { + HiPhiveOptions instance = HiPhiveOptions.DEFAULT; + HiPhiveOptions other = HiPhiveOptions.DEFAULT; + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + + @Test + public void testHashCodeNotEquals() { + HiPhiveOptions instance = HiPhiveOptions.DEFAULT; + HiPhiveOptions other = HiPhiveOptions.builder() + .candidateGeneSymbol("geneSymbol") + .diseaseId("disease") + .build(); + assertThat(instance.hashCode(), not(equalTo(other.hashCode()))); + } + + @Test + public void testEquals() { + HiPhiveOptions instance = HiPhiveOptions.DEFAULT; + HiPhiveOptions other = HiPhiveOptions.DEFAULT; + assertThat(instance.equals(other), is(true)); + } + + @Test + public void testNotEquals() { + HiPhiveOptions instance = HiPhiveOptions.DEFAULT; + HiPhiveOptions other = HiPhiveOptions.builder() + .candidateGeneSymbol("geneSymbol") + .diseaseId("disease") + .build(); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testToStringDefaultConstructor() { + HiPhiveOptions instance = HiPhiveOptions.DEFAULT; + String defaultString = "HiPhiveOptions{diseaseId='', candidateGeneSymbol='', benchmarkingEnabled=false, runPpi=true, runHuman=true, runMouse=true, runFish=true}"; + assertThat(instance.toString(), equalTo(defaultString)); + } + + @Test + public void testToStringNonDefaultRunParams() { + HiPhiveOptions instance = HiPhiveOptions.builder() + .candidateGeneSymbol("geneSymbol") + .diseaseId("diseaseId") + .runParams("human,mouse") + .build(); + String defaultString = "HiPhiveOptions{diseaseId='diseaseId', candidateGeneSymbol='geneSymbol', benchmarkingEnabled=true, runPpi=false, runHuman=true, runMouse=true, runFish=false}"; + assertThat(instance.toString(), equalTo(defaultString)); + } + + @Test + public void testGetOrganismsToRun_AllOrganisms() { + HiPhiveOptions instance = HiPhiveOptions.DEFAULT; + assertThat(instance.getOrganismsToRun(), equalTo(EnumSet.of(Organism.HUMAN, Organism.MOUSE, Organism.FISH))); + } + + @Test + public void testGetOrganismsToRun_NoOrganisms() { + HiPhiveOptions instance = HiPhiveOptions.builder() + .runParams("ppi") + .build(); + assertThat(instance.getOrganismsToRun(), equalTo(Collections.emptySet())); + } + + @Test + public void testGetOrganismsToRun_NothingDefinedMeansAll() { + HiPhiveOptions instance = HiPhiveOptions.builder() + .runParams("") + .build(); + assertThat(instance.getOrganismsToRun(), equalTo(EnumSet.of(Organism.HUMAN, Organism.MOUSE, Organism.FISH))); + } + + @Test + public void testGetOrganismsToRun_HumanMouseOnly() { + HiPhiveOptions instance = HiPhiveOptions.builder() + .runParams("human,mouse") + .build(); + assertThat(instance.getOrganismsToRun(), equalTo(EnumSet.of(Organism.HUMAN, Organism.MOUSE))); + } + + @Test + public void testGetOrganismsToRun_FishOnly() { + HiPhiveOptions instance = HiPhiveOptions.builder() + .runParams("fish") + .build(); + assertThat(instance.getOrganismsToRun(), equalTo(EnumSet.of(Organism.FISH))); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityResultTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityResultTest.java new file mode 100644 index 000000000..b9db29be0 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityResultTest.java @@ -0,0 +1,171 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class HiPhivePriorityResultTest { + + private HiPhivePriorityResult instance; + private final int geneId = 12345; + private final String geneSymbol = "FGFR2"; + private final double score = 0.87d; + private List queryPhenotypeTerms; + private List phenotypeEvidence; + private List ppiEvidence; + private final double ppiScore = 0.6d; + private final boolean matchesCandidateGene = true; + + @Before + public void setUp() { + queryPhenotypeTerms = new ArrayList<>(); + phenotypeEvidence = new ArrayList<>(); + ppiEvidence = new ArrayList<>(); + instance = new HiPhivePriorityResult(geneId, geneSymbol, score, queryPhenotypeTerms, phenotypeEvidence, ppiEvidence, ppiScore, matchesCandidateGene); + } + + private GeneModelPhenotypeMatch stubGeneModelPhenotypeMatch(Organism organism, double score) { + GeneOrthologModel model = new GeneOrthologModel("gene1_model1", organism, 12345, geneSymbol, "MGI:12345", "gene1", Collections.emptyList()); + return new GeneModelPhenotypeMatch(score, model, Collections.emptyList()); + } + + @Test + public void testGetPriorityType() { + assertThat(instance.getPriorityType(), equalTo(PriorityType.HIPHIVE_PRIORITY)); + } + + @Test + public void testGetGeneSymbol() { + assertThat(instance.getGeneSymbol(), equalTo(geneSymbol)); + } + + @Test + public void testGetScore() { +// assertThat(instance.getScore(), closeTo(score, 0.0001)); + assertThat(instance.getScore(), equalTo(score)); + } + + @Test + public void testGetQueryPhenotypeTerms() { + assertThat(instance.getQueryPhenotypeTerms(), equalTo(queryPhenotypeTerms)); + } + + @Test + public void testGetPhenotypeEvidence() { + assertThat(instance.getPhenotypeEvidence(), equalTo(phenotypeEvidence)); + } + + @Test + public void testGetPpiEvidence() { + assertThat(instance.getPpiEvidence(), equalTo(ppiEvidence)); + } + + @Test + public void testGetHTMLCode() { + assertThat(instance.getHTMLCode(), equalTo("
    No phenotype or PPI evidence
    ")); + } + + @Test + public void testGetHumanScoreIsZeroWithNoDiseaseEvidence() { + assertThat(instance.getHumanScore(), equalTo(0d)); + } + + @Test + public void testGetHumanScoreMatchesModelScore() { + double modelScore = 1d; + GeneModelPhenotypeMatch geneModel = stubGeneModelPhenotypeMatch(Organism.HUMAN, modelScore); + + List models = Arrays.asList(geneModel); + instance = new HiPhivePriorityResult(geneId, geneSymbol, score, queryPhenotypeTerms, models, ppiEvidence, ppiScore, false); + + assertThat(instance.getHumanScore(), equalTo(modelScore)); + } + + @Test + public void testGetMouseScoreIsZeroWithNoDiseaseEvidence() { + assertThat(instance.getMouseScore(), equalTo(0d)); + } + + @Test + public void testGetMouseScoreMatchesModelScore() { + double modelScore = 1d; + GeneModelPhenotypeMatch geneModel = stubGeneModelPhenotypeMatch(Organism.MOUSE, modelScore); + + List models = Arrays.asList(geneModel); + instance = new HiPhivePriorityResult(geneId, geneSymbol, score, queryPhenotypeTerms, models, ppiEvidence, ppiScore, false); + + assertThat(instance.getMouseScore(), equalTo(modelScore)); + } + + @Test + public void testGetFishScoreIsZeroWithNoDiseaseEvidence() { + assertThat(instance.getFishScore(), equalTo(0d)); + } + + @Test + public void testGetFishScoreMatchesModelScore() { + double modelScore = 1d; + GeneModelPhenotypeMatch geneModel = stubGeneModelPhenotypeMatch(Organism.FISH, modelScore); + + List models = Arrays.asList(geneModel); + instance = new HiPhivePriorityResult(geneId, geneSymbol, score, queryPhenotypeTerms, models, ppiEvidence, ppiScore, false); + + assertThat(instance.getFishScore(), equalTo(modelScore)); + } + + @Test + public void testGetWalkerScore() { + assertThat(instance.getPpiScore(), equalTo(ppiScore)); + } + + @Test + public void testIsCandidateGeneMatch_MatchesConstructorArg() { + assertThat(instance.isCandidateGeneMatch(), is(matchesCandidateGene)); + } + + @Test + public void testToString() { + System.out.println(instance.toString()); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityTest.java new file mode 100644 index 000000000..ed4afbba5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/HiPhivePriorityTest.java @@ -0,0 +1,320 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.google.common.collect.ArrayListMultimap; +import com.google.common.collect.Lists; +import org.jblas.DoubleMatrix; +import org.junit.Before; +import org.junit.Ignore; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.prioritisers.service.PriorityService; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrix; + +import java.math.BigDecimal; +import java.util.*; +import java.util.function.Consumer; + +import static java.util.stream.Collectors.toList; +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.not; +import static org.hamcrest.number.BigDecimalCloseTo.closeTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class HiPhivePriorityTest { + + private List hpoIds = getHpoIds(); + + private PriorityService priorityService = TestPriorityServiceFactory.TEST_SERVICE; + private DataMatrix testMatrix; + + @Before + public void setUp() { + double[][] ppiMatrix = { + {0.707653999329, 0.000000009625, 0.000000008875, 0.000000372898, 0.000000268611, 0.000000023074, 0.000000040680, 0.000000133227, 0.000000064774, 0.000000113817}, + {0.000000005477, 0.713751792908, 0.000008168789, 0.000000000210, 0.000000001862, 0.000000013144, 0.000000000679, 0.000000001696, 0.000000001134, 0.000000002901}, + {0.000000032869, 0.000053159707, 0.703132450581, 0.000000005321, 0.000001411398, 0.000000034059, 0.000000138069, 0.000000080616, 0.000000016616, 0.000001185472}, + {0.000001284835, 0.000000001273, 0.000000004950, 0.701313674450, 0.000000023567, 0.000000434552, 0.000001564053, 0.000000178326, 0.000000213718, 0.000000099803}, + {0.000000758085, 0.000000009233, 0.000001075537, 0.000000019304, 0.702176809311, 0.000000022661, 0.000000009667, 0.000000021993, 0.000000019951, 0.000000053246}, + {0.000000047331, 0.000000047378, 0.000000018865, 0.000000258712, 0.000000016471, 0.707689404488, 0.000006197341, 0.000000126649, 0.000000020872, 0.000000080030}, + {0.000000023518, 0.000000000690, 0.000000021553, 0.000000262441, 0.000000001980, 0.000001746652, 0.702001333237, 0.000000298203, 0.000000004386, 0.000000007073}, + {0.000000442888, 0.000000009907, 0.000000072361, 0.000000172052, 0.000000025906, 0.000000205243, 0.000001714670, 0.700654745102, 0.000000116321, 0.000000084246}, + {0.000000010099, 0.000000000311, 0.000000000700, 0.000000009671, 0.000000001102, 0.000000001586, 0.000000001183, 0.000000005456, 0.701215505600, 0.000000269338}, + {0.000000034608, 0.000000001550, 0.000000097330, 0.000000008808, 0.000000005737, 0.000000011863, 0.000000003720, 0.000000007706, 0.000000525256, 0.705851793289} + }; + DoubleMatrix doubleMatrix = new DoubleMatrix(ppiMatrix); + + testMatrix = new DataMatrix(doubleMatrix.toFloat(), new HashMap<>()); + + } + + private List getHpoIds() { + return Lists.newArrayList( + "HP:0010055", + "HP:0001363", + "HP:0001156", + "HP:0011304"); + } + + private List getGenes() { + return Lists.newArrayList( + new Gene("FGFR2", 2263), + new Gene("ROR2", 4920), + new Gene("FREM2", 341640), + new Gene("ZNF738", 148203) + ); + } + + //TODO: this should be the output of a Prioritiser: Genes + HPO -> PrioritiserResults + private List getPriorityResultsOrderedByScore(List genes) { + return genes.stream() + .flatMap(gene -> gene.getPriorityResults().values() + .stream()) + .map(result -> (HiPhivePriorityResult) result) + .sorted(Comparator.naturalOrder()) + .collect(toList()); + } + + private Consumer checkScores(Map> geneScores) { + return result -> { + System.out.println(result); + List scores = geneScores.get(result.getGeneSymbol()); + checkResultScores(result, scores); + }; + } + +// private Map> expectedHumanMouseFishScores() { +// Map> geneScores = new LinkedHashMap<>(); +// geneScores.put("FGFR2", Lists.newArrayList(0.8762904736638727, 0.8039423769154914, 0.0, 0.0, 0.0)); +// geneScores.put("ROR2", Lists.newArrayList(0.8400025551155774, 0.6796978490932033, 0.0, 0.0, 0.0)); +// geneScores.put("FREM2", Lists.newArrayList(0.5929438966299952, 0.6033446654591643, 0.0, 0.0, 0.0)); +// geneScores.put("ZNF738", Lists.newArrayList(0.0, 0.0, 0.0, 0.0, 0.0)); +// return geneScores; +// } + + private Map> expectedHumanMouseFishScores() { + Map> expectedScores = new LinkedHashMap<>(); + expectedScores.put("FGFR2", Lists.newArrayList(0.8762904736638727, 0.8039423769154914, 0.0, 0.0, 0.0)); + expectedScores.put("ROR2", Lists.newArrayList(0.8400025551155774, 0.6796978490932035210647655, 0.0, 0.0, 0.0)); + expectedScores.put("FREM2", Lists.newArrayList(0.5929438966299952, 0.6033446654591643, 0.0, 0.0, 0.0)); + expectedScores.put("ZNF738", Lists.newArrayList(0.0, 0.0, 0.0, 0.0, 0.0)); + return expectedScores; + } + + private static final BigDecimal ERROR = new BigDecimal("1e-15"); + + private void checkResultScores(HiPhivePriorityResult result, List scores) { + System.out.printf("geneId=%s, geneSymbol='%s', score=%.25f, humanScore=%.25f, mouseScore=%.25f, fishScore=%.25f, ppiScore=%.25f%n", result.geneId, result.getGeneSymbol(), result.getScore(), new BigDecimal(result.getHumanScore()), new BigDecimal(result.getMouseScore()), result.getFishScore(), result.getPpiScore()); + assertThat(result.getGeneSymbol() + " Top score", result.getScore(), equalTo(scores.subList(0, 3).stream().sorted(Comparator.reverseOrder()).findFirst().get())); + assertThat(result.getGeneSymbol() + " Human score", new BigDecimal(result.getHumanScore()), closeTo(new BigDecimal(scores.get(0)), ERROR)); +// assertThat(result.getGeneSymbol() + " Mouse score", new BigDecimal(result.getMouseScore()), equalTo(new BigDecimal(scores.get(1)))); + assertThat(result.getGeneSymbol() + " Mouse score", new BigDecimal(result.getMouseScore()), closeTo(new BigDecimal(scores.get(1)), ERROR)); + assertThat(result.getGeneSymbol() + " Fish score", result.getFishScore(), equalTo(scores.get(2))); + assertThat(result.getGeneSymbol() + " PPI score", result.getPpiScore(), equalTo(scores.get(3))); + boolean isCandidateGeneMatch = (scores.get(4) == 1.0); + assertThat(result.getGeneSymbol() + " Candidate gene", result.isCandidateGeneMatch(), equalTo(isCandidateGeneMatch)); + } + + @Test + public void testGetPriorityType() { + HiPhivePriority instance = new HiPhivePriority(HiPhiveOptions.DEFAULT, testMatrix, priorityService); + assertThat(instance.getPriorityType(), equalTo(PriorityType.HIPHIVE_PRIORITY)); + } + + @Test + public void testPrioritizeGenes() { + List genes = getGenes(); + + HiPhivePriority instance = new HiPhivePriority(HiPhiveOptions.builder() + .runParams("human,mouse,fish") + .build(), DataMatrix.EMPTY, priorityService); + instance.prioritizeGenes(hpoIds, genes); + + List results = getPriorityResultsOrderedByScore(genes); + assertThat(results.size(), equalTo(genes.size())); + + //human, mouse, fish, walker, candidateGene (this is really a boolean) + Map> geneScores = expectedHumanMouseFishScores(); + + results.forEach(checkScores(geneScores)); + } + + @Test + public void testPrioritise() { + + HiPhivePriority instance = new HiPhivePriority(HiPhiveOptions.builder() + .runParams("human,mouse,fish") + .build(), DataMatrix.EMPTY, priorityService); + List genes = getGenes(); + + List results = instance.prioritise(hpoIds, genes) + .sorted(Comparator.naturalOrder()) + .collect(toList()); + + assertThat(results.size(), equalTo(genes.size())); + + //human, mouse, fish, walker, candidateGene (this is really a boolean) + Map> geneScores = expectedHumanMouseFishScores(); + + results.forEach(checkScores(geneScores)); + } + + @Test + public void testPrioritiseWithUnMappedQueryPhenotype() { + + List hpoIds = getHpoIds(); + //This phenotype (HP:0000707) is not represented in the HP-HP mappings as it is a very low scoring self-hit. + //Consequently it increases the overall average score of the hits. + hpoIds.add("HP:0000707"); + + HiPhivePriority instance = new HiPhivePriority(HiPhiveOptions.builder() + .runParams("human,mouse,fish") + .build(), DataMatrix.EMPTY, priorityService); + List genes = getGenes(); + + List results = instance.prioritise(hpoIds, genes) + .sorted(Comparator.naturalOrder()) + .collect(toList()); + + assertThat(results.size(), equalTo(genes.size())); + + Map> expectedScores = new LinkedHashMap<>(); + expectedScores.put("FGFR2", Lists.newArrayList(0.9442318091865164, 0.8394768488788327, 0.0, 0.0, 0.0)); + expectedScores.put("ROR2", Lists.newArrayList(0.9091215195222582, 0.73554842149647, 0.0, 0.0, 0.0)); + expectedScores.put("FREM2", Lists.newArrayList(0.6248281688059083016639761, 0.6436054831824984390209465, 0.0, 0.0, 0.0)); + expectedScores.put("ZNF738", Lists.newArrayList(0.0, 0.0, 0.0, 0.0, 0.0)); + + results.forEach(checkScores(expectedScores)); + } + + @Test + public void testPrioritizeGenesRestrictedGeneList() { + List genes = getGenes().stream().filter(gene -> gene.getGeneSymbol().equals("FGFR2")).collect(toList()); + + HiPhivePriority instance = new HiPhivePriority(HiPhiveOptions.builder() + .runParams("human,mouse,fish") + .build(), DataMatrix.EMPTY, priorityService); + instance.prioritizeGenes(hpoIds, genes); +// List results = instance.prioritizeGenes(genes); + + List results = getPriorityResultsOrderedByScore(genes); + assertThat(results.size(), equalTo(genes.size())); + + //human, mouse, fish, walker, candidateGene (this is really a boolean) + Map> expectedScores = new LinkedHashMap<>(); + expectedScores.put("FGFR2", Lists.newArrayList(0.8762904736638727, 0.8039423769154914, 0.0, 0.0, 0.0)); + + results.forEach(checkScores(expectedScores)); + } + + @Test + public void testPrioritizeMouseOnlyGenes() { + List genes = getGenes(); + + HiPhivePriority instance = new HiPhivePriority(HiPhiveOptions.builder() + .runParams("mouse") + .build(), DataMatrix.EMPTY, priorityService); + instance.prioritizeGenes(hpoIds, genes); +// List results = instance.prioritizeGenes(genes); + + List results = getPriorityResultsOrderedByScore(genes); + assertThat(results.size(), equalTo(genes.size())); + + //human, mouse, fish, walker, candidateGene (this is really a boolean) + Map> expectedScores = new LinkedHashMap<>(); + expectedScores.put("FGFR2", Lists.newArrayList(0.0, 0.8039423769154914, 0.0, 0.0, 0.0)); + expectedScores.put("ROR2", Lists.newArrayList(0.0, 0.67969784909320351, 0.0, 0.0, 0.0)); + expectedScores.put("FREM2", Lists.newArrayList(0.0, 0.6033446654591643, 0.0, 0.0, 0.0)); + expectedScores.put("ZNF738", Lists.newArrayList(0.0, 0.0, 0.0, 0.0, 0.0)); + + results.forEach(checkScores(expectedScores)); + } + + @Test + public void testPrioritizeGenesInBenchmarkingMode() { + List genes = getGenes(); + + String candidateGeneSymbol = "FGFR2"; + String candidateDiseaseId = "OMIM:101600"; + + HiPhiveOptions hiPhiveOptions = HiPhiveOptions.builder() + .diseaseId(candidateDiseaseId) + .candidateGeneSymbol(candidateGeneSymbol) + .runParams("human,mouse,fish") + .build(); + + HiPhivePriority instance = new HiPhivePriority(hiPhiveOptions, DataMatrix.EMPTY, priorityService); + instance.prioritizeGenes(hpoIds, genes); + + List results = getPriorityResultsOrderedByScore(genes); + assertThat(results.size(), equalTo(genes.size())); + + HiPhivePriorityResult topResult = results.get(0); + assertThat(topResult.getGeneSymbol(), not(equalTo(candidateGeneSymbol))); + + //human, mouse, fish, walker, candidateGene (this is really a boolean) + Map> expectedScores = new LinkedHashMap<>(); + expectedScores.put("FGFR2", Lists.newArrayList(0.8322044875087917, 0.8039423769154914, 0.0, 0.0, 1.0)); +// expectedScores.put("ROR2", Lists.newArrayList(0.8400025551155774, 0.6796978490932033, 0.0, 0.0, 0.0)); + expectedScores.put("ROR2", Lists.newArrayList(0.8400025551155774, 0.67969784909320351, 0.0, 0.0, 0.0)); + expectedScores.put("FREM2", Lists.newArrayList(0.5929438966299952, 0.6033446654591643, 0.0, 0.0, 0.0)); + expectedScores.put("ZNF738", Lists.newArrayList(0.0, 0.0, 0.0, 0.0, 0.0)); + + results.forEach(checkScores(expectedScores)); + + } + + @Ignore + @Test + public void testSetPriorityService() { + ArrayListMultimap multimapInsertOrderTest = ArrayListMultimap.create(); + multimapInsertOrderTest.put(1, 1.0); + multimapInsertOrderTest.put(1, 2.0); + multimapInsertOrderTest.put(1, 3.0); + + multimapInsertOrderTest.put(3, 1.0); + + multimapInsertOrderTest.put(2, 1.0); + multimapInsertOrderTest.put(2, 1.0); + + System.out.println(multimapInsertOrderTest); + List expectedOrder = Lists.newArrayList(1, 3, 2); + assertThat(multimapInsertOrderTest.keySet(), equalTo(expectedOrder)); + } + + @Test + public void testToString() { + HiPhivePriority instance = new HiPhivePriority(HiPhiveOptions.DEFAULT, DataMatrix.EMPTY, priorityService); + System.out.println(instance); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/MockPrioritiser.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/MockPrioritiser.java new file mode 100644 index 000000000..3263c0000 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/MockPrioritiser.java @@ -0,0 +1,106 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.monarchinitiative.exomiser.core.model.Gene; + +import java.util.List; +import java.util.Map; +import java.util.function.Function; +import java.util.stream.Stream; + +/** + * Class for mocking a Prioritiser of the given PriorityType. Will score genes with scores specified for the geneIds + * supplied in the constructor with the type. + * + * @author Jules Jacobsen + */ +public class MockPrioritiser implements Prioritiser { + + private final PriorityType priorityType; + private final Map expectedScores; + + public MockPrioritiser(PriorityType priorityType, Map geneSymbolPrioritiserScores) { + this.priorityType = priorityType; + expectedScores = geneSymbolPrioritiserScores; + } + + @Override + public void prioritizeGenes(List hpoIds, List genes) { +// for (Gene gene : genes) { +// String geneSymbol = gene.getGeneSymbol(); +// Float score = expectedScores.getOrDefault(geneSymbol, 0f); +// int geneId = gene.getEntrezGeneID(); +// gene.addPriorityResult(new MockPriorityResult(priorityType, geneId, geneSymbol, score)); +// } + genes.forEach( gene -> { + PriorityResult result = prioritiseGene().apply(gene); + gene.addPriorityResult(result); + } + ); + } + + @Override + public Stream prioritise(List hpoIds, List genes) { + return genes.stream().map(prioritiseGene()); + } + + private Function prioritiseGene() { + return gene -> { + String geneSymbol = gene.getGeneSymbol(); + Float score = expectedScores.getOrDefault(geneSymbol, 0f); + int geneId = gene.getEntrezGeneID(); + return new MockPriorityResult(priorityType, geneId, geneSymbol, score); + }; + } + + @Override + public PriorityType getPriorityType() { + return priorityType; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + + MockPrioritiser that = (MockPrioritiser) o; + + if (priorityType != that.priorityType) return false; + return expectedScores.equals(that.expectedScores); + + } + + @Override + public int hashCode() { + int result = priorityType.hashCode(); + result = 31 * result + expectedScores.hashCode(); + return result; + } + + @Override + public String toString() { + return "MockPrioritiser{" + + "priorityType=" + priorityType + + ", expectedScores=" + expectedScores + + '}'; + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/MockPriorityResult.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/MockPriorityResult.java new file mode 100644 index 000000000..ba460ceb0 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/MockPriorityResult.java @@ -0,0 +1,32 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +/** + * @author Jules Jacobsen + */ +public class MockPriorityResult extends AbstractPriorityResult { + + public MockPriorityResult(PriorityType PriorityType, int geneId, String geneSymbol, double score) { + super(PriorityType, geneId, geneSymbol, score); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePrioritiserTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePrioritiserTest.java new file mode 100644 index 000000000..17d4ac349 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePrioritiserTest.java @@ -0,0 +1,63 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.junit.Before; +import org.junit.Test; + +import java.util.Collections; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class NoneTypePrioritiserTest { + + private NoneTypePrioritiser instance; + + @Before + public void setUp() { + instance = new NoneTypePrioritiser(); + } + + @Test + public void testRunAnalysisHasNoEffectOnGenes() { + instance.prioritizeGenes(Collections.emptyList(), Collections.emptyList()); + } + + @Test + public void testGetPriorityTypeReturnsNoneType() { + assertThat(instance.getPriorityType(), equalTo(PriorityType.NONE)); + } + + @Test + public void testToString(){ + assertThat(instance.toString(), equalTo("NoneTypePrioritiser{}")); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePriorityFactoryStub.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePriorityFactoryStub.java new file mode 100644 index 000000000..222dafc25 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/NoneTypePriorityFactoryStub.java @@ -0,0 +1,91 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.jblas.FloatMatrix; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrix; + +import java.util.Collections; +import java.util.LinkedHashMap; +import java.util.List; +import java.util.Map; + +/** + * + * @author Jules Jacobsen + */ +public class NoneTypePriorityFactoryStub implements PriorityFactory { + + @Override + public Prioritiser makePrioritiser(PrioritiserSettings settings) { + return new NoneTypePrioritiser(); + } + + @Override + public OMIMPriority makeOmimPrioritiser() { + return new OMIMPriority(TestPriorityServiceFactory.STUB_SERVICE); + } + + @Override + public PhenixPriority makePhenixPrioritiser() { + return new PhenixPriority(true); + } + + @Override + public PhivePriority makePhivePrioritiser() { + return new PhivePriority(TestPriorityServiceFactory.STUB_SERVICE); + } + + @Override + public ExomeWalkerPriority makeExomeWalkerPrioritiser(List entrezSeedGenes) { + DataMatrix stubDataMatrix = makeDataMatrixWithGeneIds(entrezSeedGenes); + return new ExomeWalkerPriority(stubDataMatrix, entrezSeedGenes); + } + + @Override + public HiPhivePriority makeHiPhivePrioritiser(HiPhiveOptions hiPhiveOptions) { + return new HiPhivePriority(hiPhiveOptions, null, TestPriorityServiceFactory.STUB_SERVICE); + } + + private DataMatrix makeDataMatrixWithGeneIds(List entrezSeedGenes) { + Map matrixMap = new LinkedHashMap<>(); + + for (int i = 0; i < entrezSeedGenes.size(); i++) { + Integer geneId = entrezSeedGenes.get(i); + matrixMap.put(geneId, i); + } + + DataMatrix dataMatrix = new DataMatrix(FloatMatrix.zeros(entrezSeedGenes.size(), entrezSeedGenes.size()), matrixMap); + + return dataMatrix; + } + + @Override + public List getHpoIdsForDiseaseId(String diseaseId) { + return Collections.emptyList(); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityResultTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityResultTest.java new file mode 100644 index 000000000..ff0c5d5fe --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityResultTest.java @@ -0,0 +1,110 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.google.common.collect.Lists; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class OMIMPriorityResultTest { + + private OMIMPriorityResult instance; + + @Test + public void testType() { + instance = new OMIMPriorityResult(1234, "GENE1", 0, Collections.emptyList()); + assertThat(instance.getPriorityType(), equalTo(PriorityType.OMIM_PRIORITY)); + } + + @Test + public void testGetScore() { + instance = new OMIMPriorityResult(1234, "GENE1", 1d, Collections.emptyList()); + assertThat(instance.getScore(), equalTo(1d)); + } + + @Test + public void testAssociatedDiseases() { + Disease disease = Disease.builder().diseaseId("OMIM:12345").diseaseName("OMIM disease name").diseaseType(Disease.DiseaseType.DISEASE).inheritanceModeCode("D").build(); + ArrayList diseases = Lists.newArrayList(disease); + instance = new OMIMPriorityResult(1234, "GENE1", 1d, diseases); + assertThat(instance.getAssociatedDiseases(), equalTo(diseases)); + } + + @Test + public void testToHtml_noDiseases() { + instance = new OMIMPriorityResult(1234, "GENE1", 1d, Collections.emptyList()); + System.out.println(instance.getHTMLCode()); + } + + @Test + public void testToHtml_OmimDiseases() { + Disease disease = Disease.builder().diseaseId("OMIM:12345").diseaseName("OMIM disease name").diseaseType(Disease.DiseaseType.DISEASE).inheritanceModeCode("D").build(); + Disease nonDisease = Disease.builder().diseaseId("OMIM:54321").diseaseName("OMIM non-disease name").diseaseType(Disease.DiseaseType.NON_DISEASE).inheritanceModeCode("U").build(); + instance = new OMIMPriorityResult(1234, "GENE1", 1d, Lists.newArrayList(disease, nonDisease)); + System.out.println(instance.getHTMLCode()); + } + + @Test + public void testToHtml_IncompatibleOmimDiseases() { + Disease disease = Disease.builder().diseaseId("OMIM:12345").diseaseName("Incompatible OMIM disease name").build(); + instance = new OMIMPriorityResult(1234, "GENE1", 0.5d, Lists.newArrayList(disease)); + System.out.println(instance.getHTMLCode()); + } + + @Test + public void testToHtml_IncompatibleOrphanetDiseases() { + Disease disease = Disease.builder().diseaseId("ORPHANET:12345").diseaseName("Incompatible Orphanet disease name").build(); + instance = new OMIMPriorityResult(1234, "GENE1", 0.5d, Lists.newArrayList(disease)); + System.out.println(instance.getHTMLCode()); + } + + @Test + public void testToHtml_UnknownDiseaseId() { + Disease disease = Disease.builder().diseaseId("WIBBLE:12345").diseaseName("Unknown diseaseId name").build(); + instance = new OMIMPriorityResult(1234, "GENE1", 1d, Lists.newArrayList(disease)); + System.out.println(instance.getHTMLCode()); + } + + @Test + public void testOrdering() { + Disease disease = Disease.builder().diseaseId("WIBBLE:12345").diseaseName("Unknown diseaseId name").build(); + PriorityResult one = new OMIMPriorityResult(1111, "BEST", 1d, Lists.newArrayList(disease)); + PriorityResult two = new OMIMPriorityResult(22222, "MIDDLE_A", 0.5d, Lists.newArrayList(disease)); + PriorityResult three = new OMIMPriorityResult(33333, "MIDDLE_B", 0.5d, Lists.newArrayList(disease)); + PriorityResult four = new OMIMPriorityResult(44444, "WORST", 0.1d, Lists.newArrayList(disease)); + + List actual = Arrays.asList(two, four, three, one); + Collections.sort(actual); + + assertThat(actual, equalTo(Arrays.asList(one, two, three, four))); + } +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityTest.java new file mode 100644 index 000000000..67308142e --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/OMIMPriorityTest.java @@ -0,0 +1,167 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.google.common.collect.Lists; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; + +import java.util.Collections; +import java.util.EnumSet; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class OMIMPriorityTest { + + private OMIMPriority instance; + + @Before + public void setUp() { + instance = new OMIMPriority(TestPriorityServiceFactory.TEST_SERVICE); + } + + private List getGenes() { + return Lists.newArrayList( + new Gene("FGFR2", 2263), + new Gene("ROR2", 4920), + new Gene("FREM2", 341640), + new Gene("ZNF738", 148203) + ); + } + + @Test + public void getPriorityType() throws Exception { + assertThat(instance.getPriorityType(), equalTo(PriorityType.OMIM_PRIORITY)); + } + + @Test + public void prioritizeGenes_unrecognisedGene() throws Exception { + List genes = Lists.newArrayList(new Gene("Wibble", 999999999)); + + instance.prioritizeGenes(Collections.emptyList(), genes); + + genes.forEach(gene -> { + OMIMPriorityResult result = (OMIMPriorityResult) gene.getPriorityResult(PriorityType.OMIM_PRIORITY); + System.out.printf("%s %s %s%n", gene.getGeneSymbol(), gene.getInheritanceModes(), result); + assertThat(result.getScore(), equalTo(1d)); + assertThat(result.getAssociatedDiseases().isEmpty(), is(true)); + }); + } + + @Test + public void prioritizeGenes_NoInheritanceModes() throws Exception { + List genes = getGenes(); + instance.prioritizeGenes(Collections.emptyList(), genes); + genes.forEach(gene -> { + OMIMPriorityResult result = (OMIMPriorityResult) gene.getPriorityResult(PriorityType.OMIM_PRIORITY); + System.out.printf("%s %s %s%n", gene.getGeneSymbol(), gene.getInheritanceModes(), result); + assertThat(result.getScore(), equalTo(1d)); + }); + } + + @Test + public void prioritizeGenes_NoAssociatedDiseases() throws Exception { + //ZNF738 has no associated conditions. + Gene znf738 = new Gene("ZNF738", 148203); + List genes = Lists.newArrayList(znf738); + + instance.prioritise(Collections.emptyList(), genes).forEach(result -> { + System.out.println(result); + assertThat(result.getScore(), equalTo(1d)); + assertThat(result.getAssociatedDiseases().isEmpty(), is(true)); + }); + } + + @Test + public void prioritizeGenes_RECESSIVE_ModeIsCompatible() throws Exception { + //ROR2 has two associated conditions, one recessive, the other dominant. + // We're going to simulate this matching the recessive one. + Gene ror2 = new Gene("ROR2", 4920); + ror2.setInheritanceModes(EnumSet.of(ModeOfInheritance.AUTOSOMAL_RECESSIVE)); + List genes = Lists.newArrayList(ror2); + + instance.prioritizeGenes(Collections.emptyList(), genes); + + genes.forEach(gene -> { + checkOmimScoreAndHasAssociatedDiseases(gene, 1d, false); + }); + } + + @Test + public void prioritizeGenes_DOMINANT_ModeIsCompatible() throws Exception { + //ROR2 has two associated conditions, one recessive, the other dominant. + // We're going to simulate this matching the dominant one. + Gene ror2 = new Gene("ROR2", 4920); + ror2.setInheritanceModes(EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + List genes = Lists.newArrayList(ror2); + + instance.prioritizeGenes(Collections.emptyList(), genes); + + genes.forEach(gene -> { + checkOmimScoreAndHasAssociatedDiseases(gene, 1d, false); + }); + } + + @Test + public void prioritizeGenes_NoModeSet() throws Exception { + //ROR2 has two associated conditions, one recessive, the other dominant. + // We're going to simulate this matching the dominant one. + Gene ror2 = new Gene("ROR2", 4920); + List genes = Lists.newArrayList(ror2); + + instance.prioritizeGenes(Collections.emptyList(), genes); + + genes.forEach(gene -> { + checkOmimScoreAndHasAssociatedDiseases(gene, 1d, false); + }); + } + + private void checkOmimScoreAndHasAssociatedDiseases(Gene gene, double score, boolean associatedDiseasesIsEmpty) { + OMIMPriorityResult result = (OMIMPriorityResult) gene.getPriorityResult(PriorityType.OMIM_PRIORITY); + System.out.printf("%s %s %s%n", gene.getGeneSymbol(), gene.getInheritanceModes(), result); + assertThat(result.getScore(), equalTo(score)); + assertThat(result.getAssociatedDiseases().isEmpty(), is(associatedDiseasesIsEmpty)); + } + + @Test + public void prioritizeGenes_InheritanceModeIsNotCompatible() throws Exception { + //FREM2 has only one associated condition (recessive). We're going to simulate this not matching. + Gene frem2 = new Gene("FREM2", 341640); + frem2.setInheritanceModes(EnumSet.of(ModeOfInheritance.AUTOSOMAL_DOMINANT)); + List genes = Lists.newArrayList(frem2); + + instance.prioritizeGenes(Collections.emptyList(), genes); + + genes.forEach(gene -> { + checkOmimScoreAndHasAssociatedDiseases(gene, 0.5d, false); + }); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriorityResultTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriorityResultTest.java new file mode 100644 index 000000000..be40d1f5f --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhenixPriorityResultTest.java @@ -0,0 +1,52 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.junit.Test; + +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class PhenixPriorityResultTest { + + @Test + public void testResultsAreCorrectlyOrdered() { + double maxSimilarityScore = 4.5; + //int geneId, String geneSymbol, double negLogPVal, double semScore, double normalizationFactor + PhenixPriorityResult best = new PhenixPriorityResult(1, "BEST", 1.0, -0.00001, maxSimilarityScore); + PhenixPriorityResult middleGeneOne = new PhenixPriorityResult(2, "MIDDLE_A", 0.25, 0.002, 2.5); + PhenixPriorityResult middleGeneTwo = new PhenixPriorityResult(3, "MIDDLE_B", 0.25, 0.002, 2.5); + PhenixPriorityResult worst = new PhenixPriorityResult(4, "WORST", 0.001, 10.0, 0.01); + + List actual = Arrays.asList(middleGeneTwo, worst, middleGeneOne, best); + Collections.sort(actual); + + assertThat(actual, equalTo(Arrays.asList(best, middleGeneOne, middleGeneTwo, worst))); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityResultTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityResultTest.java new file mode 100644 index 000000000..319e038b6 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityResultTest.java @@ -0,0 +1,56 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; + +import java.util.Collections; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.startsWith; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class PhivePriorityResultTest { + + private final GeneOrthologModel mouseModel = new GeneOrthologModel("mouse-model_1", Organism.MOUSE, 2263, "FGFR2", "MGI:95523", "Fgfr2", Collections.emptyList()); + private final GeneModelPhenotypeMatch geneModelPhenotypeMatch = new GeneModelPhenotypeMatch(0.827862024307251, mouseModel, Collections + .emptyList()); + + @Test + public void testIsEquals() throws Exception { + PhivePriorityResult result = new PhivePriorityResult(2263, "FGFR2", 0.827862024307251, geneModelPhenotypeMatch); + PhivePriorityResult other = new PhivePriorityResult(2263, "FGFR2", 0.827862024307251, geneModelPhenotypeMatch); + assertThat(result, equalTo(other)); + } + + @Test + public void testToString() throws Exception { + PhivePriorityResult result = new PhivePriorityResult(2263, "FGFR2", 0.827862024307251, geneModelPhenotypeMatch); + assertThat(result.toString(), startsWith("PhivePriorityResult{geneId=2263, geneSymbol='FGFR2', score=0.827862024307251")); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityTest.java new file mode 100644 index 000000000..899660e9c --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PhivePriorityTest.java @@ -0,0 +1,127 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import com.google.common.collect.Lists; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.HashMap; +import java.util.List; +import java.util.Map; + +import static java.util.stream.Collectors.toList; +import static java.util.stream.Collectors.toMap; +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class PhivePriorityTest { + + private Logger logger = LoggerFactory.getLogger(PhivePriorityTest.class); + + //TODO: add these to the TestService as GeneIdentifiers + private List getGenes() { + return Lists.newArrayList( + new Gene("FGFR2", 2263), + new Gene("ROR2", 4920), + new Gene("FREM2", 341640), + new Gene("ZNF738", 148203) + ); + } + + private void checkScores(Map actualScores, Map expectedScores) { + assertThat(actualScores.size(), equalTo(expectedScores.size())); + expectedScores.entrySet().forEach(entry -> { + String expectedGeneSymbol = entry.getKey(); + Double expectedScore = entry.getValue(); + assertThat(expectedGeneSymbol + " score not as expected", actualScores.get(expectedGeneSymbol), equalTo(expectedScore)); + }); + } + + private Map expectedMouseScores() { + Map expectedScores = new HashMap<>(); + expectedScores.put("FGFR2", 0.8278620340423056); + expectedScores.put("ROR2", 0.6999088391144016); + expectedScores.put("FREM2", 0.6208762175615226); + expectedScores.put("ZNF738", 0.6000000238418579); + return expectedScores; + } + + @Test + public void testGetPriorityType() { + PhivePriority instance = new PhivePriority(TestPriorityServiceFactory.STUB_SERVICE); + assertThat(instance.getPriorityType(), equalTo(PriorityType.PHIVE_PRIORITY)); + } + + @Test + public void testPrioritizeGenes() { + List genes = getGenes(); + + List hpoIds= Lists.newArrayList("HP:0010055", "HP:0001363", "HP:0001156", "HP:0011304"); + PhivePriority phivePriority = new PhivePriority(TestPriorityServiceFactory.TEST_SERVICE); + phivePriority.prioritizeGenes(hpoIds, genes); + + List results = genes.stream() + .flatMap(gene -> gene.getPriorityResults().values().stream()) + .map(priorityResult -> (PhivePriorityResult) priorityResult) + .sorted() + .collect(toList()); + + results.forEach(System.out::println); + assertThat(results.size(), equalTo(genes.size())); + + Map actualScores = results.stream().collect(toMap(PhivePriorityResult::getGeneSymbol, PhivePriorityResult::getScore)); + checkScores(actualScores, expectedMouseScores()); + } + + @Test + public void testPrioritise() { + List genes = getGenes(); + + List hpoIds= Lists.newArrayList("HP:0010055", "HP:0001363", "HP:0001156", "HP:0011304"); + PhivePriority phivePriority = new PhivePriority(TestPriorityServiceFactory.TEST_SERVICE); + + List results = phivePriority.prioritise(hpoIds, genes) + .sorted() + .collect(toList()); + + results.forEach(System.out::println); + assertThat(results.size(), equalTo(genes.size())); + + Map actualScores = results.stream().collect(toMap(PhivePriorityResult::getGeneSymbol, PhivePriorityResult::getScore)); + checkScores(actualScores, expectedMouseScores()); + } + + @Test + public void testHashCode() { + PhivePriority phivePriority = new PhivePriority(TestPriorityServiceFactory.TEST_SERVICE); + PhivePriority other = new PhivePriority(TestPriorityServiceFactory.TEST_SERVICE); + System.out.println(phivePriority.hashCode()); + System.out.println(other.hashCode()); + assertThat(phivePriority, equalTo(other)); + } +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryImplTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryImplTest.java new file mode 100644 index 000000000..901c043b9 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryImplTest.java @@ -0,0 +1,149 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatchService; +import org.monarchinitiative.exomiser.core.phenotype.dao.HumanPhenotypeOntologyDao; +import org.monarchinitiative.exomiser.core.phenotype.dao.MousePhenotypeOntologyDao; +import org.monarchinitiative.exomiser.core.phenotype.dao.ZebraFishPhenotypeOntologyDao; +import org.monarchinitiative.exomiser.core.phenotype.service.OntologyServiceImpl; +import org.monarchinitiative.exomiser.core.prioritisers.dao.DefaultDiseaseDao; +import org.monarchinitiative.exomiser.core.prioritisers.service.ModelServiceImpl; +import org.monarchinitiative.exomiser.core.prioritisers.service.PriorityService; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.jdbc.Sql; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; + +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(classes = { + PriorityFactoryImpl.class, + PriorityFactoryTestConfig.class, + PriorityService.class, + OntologyServiceImpl.class, + PhenotypeMatchService.class, + ModelServiceImpl.class, + DefaultDiseaseDao.class, + HumanPhenotypeOntologyDao.class, + MousePhenotypeOntologyDao.class, + ZebraFishPhenotypeOntologyDao.class +}) +@Sql(scripts = { + "file:src/test/resources/sql/create_disease.sql", + "file:src/test/resources/sql/create_disease_hp.sql", + "file:src/test/resources/sql/create_entrez2sym.sql", + "file:src/test/resources/sql/diseaseDaoTestData.sql" +}) +public class PriorityFactoryImplTest { + + @Autowired + private PriorityFactoryImpl instance; + + private PrioritiserSettings buildValidSettingsWithPrioritiser(PriorityType priorityType) { + return PrioritiserSettings.builder().usePrioritiser(priorityType).build(); + } + + @Test + public void testCanGetOmimPrioritizerByType() { + PriorityType type = PriorityType.OMIM_PRIORITY; + PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); + + Prioritiser prioritiser = instance.makePrioritiser(settings); + assertThat(prioritiser.getPriorityType(), equalTo(type)); + } + + @Test + public void testmakePrioritiserForExomeWalkerPriority() { + PriorityType type = PriorityType.EXOMEWALKER_PRIORITY; + PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); + + Prioritiser prioritiser = instance.makePrioritiser(settings); + assertThat(prioritiser.getPriorityType(), equalTo(type)); + } + + @Test + public void testmakePrioritiserForHiPhivePriority() { + PriorityType type = PriorityType.HIPHIVE_PRIORITY; + PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); + + Prioritiser prioritiser = instance.makePrioritiser(settings); + assertThat(prioritiser.getPriorityType(), equalTo(type)); + } + + @Test + public void testmakeHiPhivePrioritiserWithDiseaseIdAndEmptyHpoList() { + PriorityType type = PriorityType.HIPHIVE_PRIORITY; + List emptyStringList = Collections.emptyList(); + PrioritiserSettings settings = PrioritiserSettings.builder() + .usePrioritiser(type) + .diseaseId("OMIM:101600") + .hpoIdList(emptyStringList) + .build(); + + Prioritiser prioritiser = instance.makePrioritiser(settings); + assertThat(prioritiser.getPriorityType(), equalTo(type)); + } + + @Test + public void testmakePrioritiserForPhivePriority() { + PriorityType type = PriorityType.PHIVE_PRIORITY; + PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); + + Prioritiser prioritiser = instance.makePrioritiser(settings); + assertThat(prioritiser.getPriorityType(), equalTo(type)); + } + + @Test(expected = RuntimeException.class) + public void testmakePrioritiserForPhenixPriorityThrowsRuntimeExceptionDueToMissingPhenixData() { + PriorityType type = PriorityType.PHENIX_PRIORITY; + PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); + + Prioritiser prioritiser = instance.makePrioritiser(settings); + assertThat(prioritiser.getPriorityType(), equalTo(type)); + } + + @Test + public void testmakePrioritiserNonePriorityReturnsNoneTypePrioritiser() { + PriorityType type = PriorityType.NONE; + PrioritiserSettings settings = buildValidSettingsWithPrioritiser(type); + + Prioritiser prioritiser = instance.makePrioritiser(settings); + assertThat(prioritiser.getPriorityType(), equalTo(PriorityType.NONE)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryTestConfig.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryTestConfig.java new file mode 100644 index 000000000..5eee0b7a1 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityFactoryTestConfig.java @@ -0,0 +1,77 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.h2.jdbcx.JdbcConnectionPool; +import org.jblas.FloatMatrix; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrix; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; + +import javax.sql.DataSource; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.HashMap; +import java.util.Map; + +/** + * + * @author Jules Jacobsen + */ +@Configuration +public class PriorityFactoryTestConfig { + + private static final Logger logger = LoggerFactory.getLogger(PriorityFactoryTestConfig.class); + + @Bean + DataSource dataSource() { + String url = "jdbc:h2:mem:exomiser;MODE=PostgreSQL;DATABASE_TO_UPPER=FALSE;"; + String user = "sa"; + String password = "sa"; + + return JdbcConnectionPool.create(url, user, password); + } + +// @Bean +// PriorityFactoryImpl priorityFactory() { +// return new PriorityFactoryImpl(); +// } + + @Bean + DataMatrix randomWalkMatrix() { + logger.info("Loading random walk matrix bean..."); + Map stubMatrixIndex = new HashMap<>(); + return new DataMatrix(FloatMatrix.EMPTY, stubMatrixIndex); + } + + @Bean + Path phenixDataDirectory() { + return Paths.get("stubPhenixDataDir"); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityTypeTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityTypeTest.java new file mode 100644 index 000000000..4c63e4c7c --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/PriorityTypeTest.java @@ -0,0 +1,49 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.prioritisers; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PriorityTypeTest { + + /** + * Test of toString method, of class PriorityType. + */ + @Test + public void testToString() { + PriorityType instance = PriorityType.PHIVE_PRIORITY; + assertThat(instance.toString(), equalTo("PHIVE_PRIORITY")); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/config/TestDataSourceConfig.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/config/TestDataSourceConfig.java new file mode 100644 index 000000000..bb6fcf751 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/config/TestDataSourceConfig.java @@ -0,0 +1,49 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.config; + +import org.h2.jdbcx.JdbcConnectionPool; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; + +import javax.sql.DataSource; + +/** + * + * @author Jules Jacobsen + */ +@Configuration +public class TestDataSourceConfig { + + @Bean + public DataSource dataSource() { + String url = "jdbc:h2:mem:exomiser;MODE=PostgreSQL;DATABASE_TO_UPPER=FALSE;"; + String user = "sa"; + String password = "sa"; + + return JdbcConnectionPool.create(url, user, password); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DefaultDiseaseDaoTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DefaultDiseaseDaoTest.java new file mode 100644 index 000000000..4b65d5a84 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/dao/DefaultDiseaseDaoTest.java @@ -0,0 +1,84 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.dao; + +import com.google.common.collect.Lists; +import com.google.common.collect.Sets; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.prioritisers.config.TestDataSourceConfig; +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; +import org.monarchinitiative.exomiser.core.prioritisers.model.InheritanceMode; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.jdbc.Sql; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; + +import java.util.Arrays; +import java.util.List; +import java.util.Set; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(classes = {TestDataSourceConfig.class, DefaultDiseaseDao.class}) +@Sql(scripts = { + "file:src/test/resources/sql/create_disease.sql", + "file:src/test/resources/sql/create_disease_hp.sql", + "file:src/test/resources/sql/create_entrez2sym.sql", + "file:src/test/resources/sql/diseaseDaoTestData.sql"}) +public class DefaultDiseaseDaoTest { + + @Autowired + DefaultDiseaseDao instance; + + private final Disease disease = Disease.builder() + .diseaseId("OMIM:101600") + .diseaseName("Craniofacial-skeletal-dermatologic dysplasia") + .associatedGeneId(2263) + .associatedGeneSymbol("FGFR2") + .diseaseType(Disease.DiseaseType.DISEASE) + .inheritanceMode(InheritanceMode.AUTOSOMAL_DOMINANT) + .phenotypeIds(Arrays.asList("HP:0000174, HP:0000194, HP:0000218, HP:0000238, HP:0000244, HP:0000272, HP:0000303, HP:0000316, HP:0000322, HP:0000324, HP:0000327, HP:0000348, HP:0000431, HP:0000452, HP:0000453, HP:0000470, HP:0000486, HP:0000494, HP:0000508, HP:0000586, HP:0000678, HP:0001156, HP:0001249, HP:0002308, HP:0002676, HP:0002780, HP:0003041, HP:0003070, HP:0003196, HP:0003272, HP:0003307, HP:0003795, HP:0004209, HP:0004322, HP:0004440, HP:0005048, HP:0005280, HP:0005347, HP:0006101, HP:0006110, HP:0009602, HP:0009773, HP:0010055, HP:0010669, HP:0011304".split(", "))) + .build(); + + @Test + public void testGetHpoIdsForDiseaseId() { + Set omim101600HpoIds = Sets.newTreeSet(disease.getPhenotypeIds()); + assertThat(instance.getHpoIdsForDiseaseId("OMIM:101600"), equalTo(omim101600HpoIds)); + } + + @Test + public void testGetDiseaseDataAssociatedWithGeneId() { + List expected = Lists.newArrayList(disease) ; + assertThat(instance.getDiseaseDataAssociatedWithGeneId(2263), equalTo(expected)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/dao/TestDiseaseDao.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/dao/TestDiseaseDao.java new file mode 100644 index 000000000..e347a1c2b --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/dao/TestDiseaseDao.java @@ -0,0 +1,55 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.dao; + +import com.google.common.collect.ImmutableSet; +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; + +import java.util.*; + +import static java.util.stream.Collectors.groupingBy; + +/** + * @author Jules Jacobsen + */ +public class TestDiseaseDao implements DiseaseDao { + + private final Set diseases; + private final Map> geneDiseaseAssociations; + + public TestDiseaseDao(List diseases) { + this.diseases = new LinkedHashSet<>(diseases); + geneDiseaseAssociations = diseases.stream().collect(groupingBy(Disease::getAssociatedGeneId)); + } + + @Override + public Set getHpoIdsForDiseaseId(String diseaseId) { + return diseases.stream() + .filter(entry -> entry.getDiseaseId().equals(diseaseId)) + .flatMap(entry -> entry.getPhenotypeIds().stream()) + .collect(ImmutableSet.toImmutableSet()); + } + + @Override + public List getDiseaseDataAssociatedWithGeneId(int geneId) { + return geneDiseaseAssociations.getOrDefault(geneId, Collections.emptyList()); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/DiseaseTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/DiseaseTest.java new file mode 100644 index 000000000..56d6ec523 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/DiseaseTest.java @@ -0,0 +1,92 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.junit.Test; + +import java.util.Arrays; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class DiseaseTest { + + @Test + public void testDiseaseData() { + //2263 FGFR2 OMIM:101600 Craniofacial-skeletal-dermatologic dysplasia D D HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304 + Disease instance = Disease.builder() + .diseaseId("OMIM:101600") + .diseaseName("Craniofacial-skeletal-dermatologic dysplasia") + .associatedGeneId(2263) + .associatedGeneSymbol("FGFR2") + .diseaseType(Disease.DiseaseType.DISEASE) + .inheritanceMode(InheritanceMode.AUTOSOMAL_DOMINANT) + .phenotypeIds(Arrays.asList("HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304".split(","))) + .build(); + System.out.println(instance); + + Disease other = Disease.builder() + .diseaseId("OMIM:101600") + .diseaseName("Craniofacial-skeletal-dermatologic dysplasia") + .associatedGeneId(2263) + .associatedGeneSymbol("FGFR2") + .diseaseType(Disease.DiseaseType.DISEASE) + .inheritanceMode(InheritanceMode.AUTOSOMAL_DOMINANT) + .phenotypeIds(Arrays.asList("HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304".split(","))) + .build(); + System.out.println(other); + + assertThat(instance, equalTo(other)); + } + + @Test + public void testInheritanceCode() { + assertThat(Disease.builder() + .inheritanceModeCode("D") + .build().getInheritanceMode(), equalTo(InheritanceMode.AUTOSOMAL_DOMINANT)); + } + + @Test + public void testDiseaseCode() { + assertThat(Disease.builder() + .diseaseTypeCode("D") + .build().getDiseaseType(), equalTo(Disease.DiseaseType.DISEASE)); + + assertThat(Disease.builder() + .diseaseTypeCode("N") + .build().getDiseaseType(), equalTo(Disease.DiseaseType.NON_DISEASE)); + + assertThat(Disease.builder() + .diseaseTypeCode("S") + .build().getDiseaseType(), equalTo(Disease.DiseaseType.SUSCEPTIBILITY)); + + assertThat(Disease.builder() + .diseaseTypeCode("C") + .build().getDiseaseType(), equalTo(Disease.DiseaseType.CNV)); + + assertThat(Disease.builder() + .diseaseTypeCode("U") + .build().getDiseaseType(), equalTo(Disease.DiseaseType.UNCONFIRMED)); + } +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneDiseaseModelTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneDiseaseModelTest.java new file mode 100644 index 000000000..4db3de2da --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneDiseaseModelTest.java @@ -0,0 +1,67 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.Organism; + +import java.util.Collections; + +/** + * @author Jules Jacobsen + */ +public class GeneDiseaseModelTest { + + @Test + public void testToString() { + //TODO: consider GeneOrthologModel, GeneDiseaseModel, PatientModel, AbstractModel, phenotypeIds, score, bestPhenotypeMatchForTerms + //TODO: see https://github.com/exomiser/Exomiser/issues/138 + //Disease: +// private final String modelId; +// private final Organism organism; +// +// private final int entrezGeneId; +// private final String humanGeneSymbol; +// +// private final String diseaseId; +// private final String diseaseTerm; +// +// private final DiseaseType diseaseType; +// private final InheritanceMode inheritanceMode; +// +// private final List phenotypeIds; + + //Gene: +// private final String modelId; +// private final Organism organism; +// +// private final int entrezGeneId; +// private final String humanGeneSymbol; +// +// private final String modelGeneId; +// private final String modelGeneSymbol; +// +// private final List phenotypeIds; + + System.out.println(new GeneDiseaseModel("modelId", Organism.HUMAN, 12345, "GENE1", "DISEASE:1", "Thing's disease", Collections.emptyList())); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneMatchTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneMatchTest.java new file mode 100644 index 000000000..47834951c --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneMatchTest.java @@ -0,0 +1,77 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import com.google.common.collect.Lists; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.Organism; + +import java.util.Collections; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class GeneMatchTest { + + private GeneMatch instance; + + @Test + public void queryGeneId() throws Exception { + instance = GeneMatch.builder().queryGeneId(1234).build(); + assertThat(instance.getQueryGeneId(), equalTo(1234)); + } + + @Test + public void matchGeneId() throws Exception { + instance = GeneMatch.builder().matchGeneId(4321).build(); + assertThat(instance.getMatchGeneId(), equalTo(4321)); + } + + @Test + public void score() throws Exception { + instance = GeneMatch.builder().score(1.0).build(); + assertThat(instance.getScore(), equalTo(1.0)); + } + + @Test + public void bestMatchModels() throws Exception { + GeneModelPhenotypeMatch geneModelPhenotypeMatch = new GeneModelPhenotypeMatch(0, new GeneOrthologModel("Model:500", Organism.HUMAN, 4321, "GENE1", "HGNC:4321", "GENE1", Collections + .emptyList()), Collections.emptyList()); + List models = Lists.newArrayList(geneModelPhenotypeMatch); + instance = GeneMatch.builder().bestMatchModels(models).build(); + assertThat(instance.getBestMatchModels(), equalTo(models)); + } + + @Test + public void build() throws Exception { + instance = GeneMatch.builder().build(); + assertThat(instance, equalTo(GeneMatch.NO_HIT)); + } + + @Test + public void testToString() { + System.out.println(GeneMatch.NO_HIT); + } +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModelPhenotypeMatchTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModelPhenotypeMatchTest.java new file mode 100644 index 000000000..f9fac2599 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneModelPhenotypeMatchTest.java @@ -0,0 +1,43 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.junit.Test; + +import java.util.Arrays; +import java.util.Collections; +import java.util.List; + +/** + * @author Jules Jacobsen + */ +public class GeneModelPhenotypeMatchTest { + + @Test + public void testCreateType() { + GeneModelPhenotypeMatch mouseGeneOrthologMatch = new GeneModelPhenotypeMatch(1.0, null, Collections.emptyList()); + GeneModelPhenotypeMatch diseaseGeneOrthologMatch = new GeneModelPhenotypeMatch(1.0, null, Collections.emptyList()); + + List geneModelPhenotypeMatches = Arrays.asList(mouseGeneOrthologMatch, diseaseGeneOrthologMatch); + geneModelPhenotypeMatches.forEach(System.out::println); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneOrthologModelTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneOrthologModelTest.java new file mode 100644 index 000000000..0d8216297 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/GeneOrthologModelTest.java @@ -0,0 +1,138 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.Organism; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class GeneOrthologModelTest { + + private GeneOrthologModel instance; + private final Organism organism = Organism.MOUSE; + private final int entrezGeneId = 12345; + private final String humanGeneSymbol = "GENE1"; + private final String modelId = "gene1_model1"; + private final String modelGeneId = "MGI:12345"; + private final String modelGeneSymbol = "Gene1"; + private final List modelPhenotypeIds = new ArrayList<>(Arrays.asList("HP:0000000", "HP:0000001")); + + @Before + public void setUp() { + //TODO: want it to work more like this I think - although a HUMAN modelOrganism would indicate a GeneDiseaseModel +// humanGeneId = new HumanGeneIdentifier(humanGeneId, humanGeneSymbol); +// modelGeneId = new HumanGeneIdentifier(modelGeneId, modelGeneSymbol); +// diseaseId = new DiseaseIdentifier(diseaseId, diseaseTerm); +// modelOrganism = Organism.HUMAN +// instance = new GeneOrthologModel(modelOrganism, humanGeneId, modelGeneId, modelPhenotypeIds); +// instance = new GeneDiseaseModel(modelOrganism, humanGeneId, diseaseId, modelPhenotypeIds); + instance = new GeneOrthologModel(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); + } + + @Test + public void testGetEntrezGeneId() { + assertThat(instance.getEntrezGeneId(), equalTo(entrezGeneId)); + } + + @Test + public void testGetHumanGeneSymbol() { + assertThat(instance.getHumanGeneSymbol(), equalTo(humanGeneSymbol)); + } + + @Test + public void testGetModelId() { + assertThat(instance.getId(), equalTo(modelId)); + } + + @Test + public void testGetModelGeneSymbol() { + assertThat(instance.getModelGeneSymbol(), equalTo(modelGeneSymbol)); + } + + @Test + public void testGetPhenotypeIds() { + assertThat(instance.getPhenotypeIds(), equalTo(modelPhenotypeIds)); + } + + @Test + public void testHashCode() { + GeneOrthologModel other = new GeneOrthologModel(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + + @Test + public void testEquals() { + GeneOrthologModel other = new GeneOrthologModel(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); + assertThat(instance.equals(other), is(true)); + } + + @Test + public void testNotEqualsGeneId() { + GeneOrthologModel other = new GeneOrthologModel(modelId, organism, 54321, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEqualsGeneSymbol() { + GeneOrthologModel other = new GeneOrthologModel(modelId, organism, entrezGeneId, "GENE2", modelGeneId, modelGeneSymbol, modelPhenotypeIds); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEqualsModelId() { + GeneOrthologModel other = new GeneOrthologModel("different_model", organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, modelPhenotypeIds); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEqualsPhenotypes() { + GeneOrthologModel other = new GeneOrthologModel(modelId, organism, entrezGeneId, humanGeneSymbol, modelGeneId, modelGeneSymbol, null); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testNotEqualsOrganism() { + GeneOrthologModel other = new GeneOrthologModel(modelId, Organism.HUMAN, entrezGeneId, humanGeneSymbol, modelId, modelGeneSymbol, null); + assertThat(instance.equals(other), is(false)); + } + + @Test + public void testToString() { + assertThat(instance.toString(), not(startsWith("de.charite.compbio"))); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/InheritanceModeTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/InheritanceModeTest.java new file mode 100644 index 000000000..0259e3c61 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/InheritanceModeTest.java @@ -0,0 +1,113 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author jj8 + */ +public class InheritanceModeTest { + + /** + * Test of valueOf method, of class InheritanceMode. + */ + @Test + public void testValueOf() { + assertThat(InheritanceMode.valueOf("X_RECESSIVE"), equalTo(InheritanceMode.X_RECESSIVE)); + } + + /** + * Test of getTerm method, of class InheritanceMode. + */ + @Test + public void testGetTerm() { + assertThat(InheritanceMode.AUTOSOMAL_RECESSIVE.getTerm(), equalTo("autosomal recessive")); + } + + /** + * Test of getInheritanceCode method, of class InheritanceMode. + */ + @Test + public void testGetInheritanceCode() { + assertThat(InheritanceMode.MITOCHONDRIAL.getInheritanceCode(), equalTo("M")); + } + + /** + * Test of valueOfInheritanceCode method, of class InheritanceMode. + */ + @Test + public void testValueOfInheritanceCode() { + assertThat(InheritanceMode.valueOfInheritanceCode("D"), equalTo(InheritanceMode.AUTOSOMAL_DOMINANT)); + assertThat(InheritanceMode.valueOfInheritanceCode("R"), equalTo(InheritanceMode.AUTOSOMAL_RECESSIVE)); + assertThat(InheritanceMode.valueOfInheritanceCode("B"), equalTo(InheritanceMode.AUTOSOMAL_DOMINANT_AND_RECESSIVE)); + assertThat(InheritanceMode.valueOfInheritanceCode("X"), equalTo(InheritanceMode.X_LINKED)); + assertThat(InheritanceMode.valueOfInheritanceCode("XD"), equalTo(InheritanceMode.X_DOMINANT)); + assertThat(InheritanceMode.valueOfInheritanceCode("XR"), equalTo(InheritanceMode.X_RECESSIVE)); + assertThat(InheritanceMode.valueOfInheritanceCode("Y"), equalTo(InheritanceMode.Y_LINKED)); + assertThat(InheritanceMode.valueOfInheritanceCode("M"), equalTo(InheritanceMode.MITOCHONDRIAL)); + assertThat(InheritanceMode.valueOfInheritanceCode("S"), equalTo(InheritanceMode.SOMATIC)); + assertThat(InheritanceMode.valueOfInheritanceCode("P"), equalTo(InheritanceMode.POLYGENIC)); + assertThat(InheritanceMode.valueOfInheritanceCode("U"), equalTo(InheritanceMode.UNKNOWN)); + assertThat(InheritanceMode.valueOfInheritanceCode("unrecognised code"), equalTo(InheritanceMode.UNKNOWN)); + } + + @Test + public void isCompatibleWithDominant() { + assertThat(InheritanceMode.AUTOSOMAL_DOMINANT.isCompatibleWithDominant(), is(true)); + assertThat(InheritanceMode.AUTOSOMAL_DOMINANT_AND_RECESSIVE.isCompatibleWithDominant(), is(true)); + + assertThat(InheritanceMode.AUTOSOMAL_RECESSIVE.isCompatibleWithDominant(), is(false)); + } + + @Test + public void isCompatibleWithRecessive() { + assertThat(InheritanceMode.AUTOSOMAL_RECESSIVE.isCompatibleWithRecessive(), is(true)); + assertThat(InheritanceMode.AUTOSOMAL_DOMINANT_AND_RECESSIVE.isCompatibleWithRecessive(), is(true)); + + assertThat(InheritanceMode.AUTOSOMAL_DOMINANT.isCompatibleWithRecessive(), is(false)); + } + + @Test + public void isXlinked() { + assertThat(InheritanceMode.X_DOMINANT.isXlinked(), is(true)); + assertThat(InheritanceMode.X_LINKED.isXlinked(), is(true)); + assertThat(InheritanceMode.X_RECESSIVE.isXlinked(), is(true)); + + assertThat(InheritanceMode.AUTOSOMAL_DOMINANT.isXlinked(), is(false)); + } + + @Test + public void testToString() { + System.out.println(InheritanceMode.X_DOMINANT); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/OrganismTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/OrganismTest.java new file mode 100644 index 000000000..304be88b5 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/model/OrganismTest.java @@ -0,0 +1,45 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.model; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.Organism; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class OrganismTest { + + @Test + public void testValues() { + Organism[] values = {Organism.HUMAN, Organism.MOUSE, Organism.FISH}; + assertThat(Organism.values(), equalTo(values)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestModelService.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestModelService.java new file mode 100644 index 000000000..971ef6fe1 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestModelService.java @@ -0,0 +1,56 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.service; + +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; + +import java.util.List; + +/** + * @author Jules Jacobsen + */ +public class TestModelService implements ModelService { + + private final List diseaseModels; + private final List mouseModels; + private final List fishModels; + + public TestModelService(List diseaseModels, List mouseModels, List fishModels) { + this.diseaseModels = diseaseModels; + this.mouseModels = mouseModels; + this.fishModels = fishModels; + } + + @Override + public List getHumanGeneDiseaseModels() { + return diseaseModels; + } + + @Override + public List getMouseGeneOrthologModels() { + return mouseModels; + } + + @Override + public List getFishGeneOrthologModels() { + return fishModels; + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestPrioritiserDataFileReader.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestPrioritiserDataFileReader.java new file mode 100644 index 000000000..a3a8653c2 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestPrioritiserDataFileReader.java @@ -0,0 +1,145 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.service; + +import com.google.common.collect.Lists; +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneDiseaseModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; + +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Paths; +import java.util.List; +import java.util.function.Function; +import java.util.stream.Stream; + +import static java.util.stream.Collectors.toList; + +/** + * @author Jules Jacobsen + */ +public class TestPrioritiserDataFileReader { + + private static final String COMMENT_LINE_PREFIX = "#"; + + private TestPrioritiserDataFileReader() { + //static utility class + } + + public static List readOrganismData(String organismModelTestDataFile) { + return readLines(organismModelTestDataFile) + .filter(line -> !line.startsWith(COMMENT_LINE_PREFIX)) + .map(lineToGeneModel()) + .collect(toList()); + } + + private static Function lineToGeneModel() { + //MOUSE MGI:95523_118 2263 FGFR2 MGI:95523 Fgfr2 MP:0009522,MP:0009525 + //FISH ZDB-GENE-081119-4_3835 341640 HGNC:25396 ZDB-GENE-081119-4 frem2b ZP:0004670,ZP:0004671,ZP:0004669 + return line -> { + String[] fields = line.split("\t"); + return new GeneOrthologModel(fields[1], Organism.valueOf(fields[0]), Integer.valueOf(fields[2]), fields[3], fields[4], fields[5], getOntologyTerms(fields[6])); + }; + } + + public static List readDiseaseData(String diseaseModelTestDataFile) { + return readLines(diseaseModelTestDataFile) + .filter(line -> !line.startsWith(COMMENT_LINE_PREFIX)) + .map(lineToDiseaseData()) + .collect(toList()); + } + + private static Function lineToDiseaseData() { + //HUMAN 2263 FGFR2 OMIM:613659 Gastric cancer,somatic D S HP:0012126 + return line -> { + String[] fields = line.split("\t"); + return Disease.builder().diseaseId(fields[3]) + .diseaseName(fields[4]) + .associatedGeneId(Integer.valueOf(fields[1])) + .associatedGeneSymbol(fields[2]) + .diseaseTypeCode(fields[5]) + .inheritanceModeCode(fields[6]) + .phenotypeIds(getOntologyTerms(fields[7])) + .build(); + }; + } + + public static List readDiseaseModelData(String diseaseModelTestDataFile) { + return readLines(diseaseModelTestDataFile) + .filter(line -> !line.startsWith(COMMENT_LINE_PREFIX)) + .map(lineToDiseaseModel()) + .collect(toList()); + } + + private static Function lineToDiseaseModel() { + //HUMAN 2263 FGFR2 OMIM:613659 Gastric cancer,somatic D S HP:0012126 + return line -> { + String[] fields = line.split("\t"); + String modelId = fields[3] + "_" + fields[1]; + return new GeneDiseaseModel(modelId, Organism.valueOf(fields[0]), Integer.valueOf(fields[1]), fields[2], fields[3], fields[4], getOntologyTerms(fields[7])); + }; + } + + private static List getOntologyTerms(String field) { + return Lists.newArrayList(field.split(",")); + } + + public static List readOntologyMatchData(String ontologyMatchFile) { + return readLines(ontologyMatchFile) + .filter(line -> !line.startsWith(COMMENT_LINE_PREFIX)) + .map(lineToPhenotypeMatch()) + .collect(toList()); + } + + private static Function lineToPhenotypeMatch() { + //HP:0010055 Broad hallux 0.000000 ZP:0012192 null 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.529091 0.188889 0.691171 + return line -> { + String[] elements = line.split("\t"); + PhenotypeTerm query = PhenotypeTerm.of(elements[0], elements[1]); + PhenotypeTerm match = PhenotypeTerm.of(elements[3], elements[4]); + PhenotypeTerm lcs = PhenotypeTerm.of(elements[6], elements[7]); + + return PhenotypeMatch.builder() + .query(query) + .match(match) + .lcs(lcs) + .ic(Double.valueOf(elements[8])) + .simj(Double.valueOf(elements[9])) + .score(Double.valueOf(elements[10])) + .build(); + }; + } + + private static Stream readLines(String filePath) { + try { + return Files.lines(Paths.get(filePath), Charset.forName("UTF-8")); + } catch (IOException e) { + e.printStackTrace(); + } + return null; + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestPriorityServiceFactory.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestPriorityServiceFactory.java new file mode 100644 index 000000000..bb0aafca1 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/service/TestPriorityServiceFactory.java @@ -0,0 +1,129 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.service; + +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatchService; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.phenotype.service.OntologyService; +import org.monarchinitiative.exomiser.core.phenotype.service.TestOntologyService; +import org.monarchinitiative.exomiser.core.prioritisers.dao.TestDiseaseDao; +import org.monarchinitiative.exomiser.core.prioritisers.model.Disease; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModel; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.Collections; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import java.util.stream.Collectors; + +/** + * @author Jules Jacobsen + */ +public class TestPriorityServiceFactory { + + private static final Logger logger = LoggerFactory.getLogger(TestPriorityServiceFactory.class); + + public static final OntologyService TEST_ONTOLOGY_SERVICE = setUpOntologyService(); + + public static final PriorityService TEST_SERVICE = setUpPriorityService(); + public static final PriorityService STUB_SERVICE = setUpStubPriorityService(); + + + private static PriorityService setUpStubPriorityService() { + ModelService stubModelService = new TestModelService(Collections.emptyList(), Collections.emptyList(), Collections.emptyList()); + + OntologyService stubOntologyService = TestOntologyService.builder() + .setHpIdPhenotypeTerms(Collections.emptyMap()) + .setHumanHumanMappings(Collections.emptyMap()) + .setHumanMouseMappings(Collections.emptyMap()) + .setHumanFishMappings(Collections.emptyMap()) + .build(); + + return new PriorityService(stubModelService, new PhenotypeMatchService(stubOntologyService), null); + } + + private static PriorityService setUpPriorityService() { + logger.info("Creating test priority service - this is static test data"); + + OntologyService testOntologyService = setUpOntologyService(); + + logger.info("To the following models:"); + ModelService testModelService = setUpModelService(); + + logger.info("Associated with genes:"); + logger.info(" Entrez:2263 - FGFR2"); + logger.info(" Entrez:4920 - ROR2"); + logger.info(" Entrez:341640 - FREM2"); + + List diseases = TestPrioritiserDataFileReader.readDiseaseData("src/test/resources/prioritisers/disease-models"); + TestDiseaseDao testDiseaseDao = new TestDiseaseDao(diseases); + + return new PriorityService(testModelService, new PhenotypeMatchService(testOntologyService), testDiseaseDao); + } + + private static OntologyService setUpOntologyService() { + Map hpPhenotypesTerms = new HashMap<>(); + hpPhenotypesTerms.put("HP:0010055", PhenotypeTerm.of("HP:0010055", "Broad hallux")); + hpPhenotypesTerms.put("HP:0001363", PhenotypeTerm.of("HP:0001363", "Craniosynostosis")); + hpPhenotypesTerms.put("HP:0001156", PhenotypeTerm.of("HP:0001156", "Brachydactyly syndrome")); + hpPhenotypesTerms.put("HP:0011304", PhenotypeTerm.of("HP:0011304", "Broad thumb")); + + logger.info("This data links {} phenotypes:", hpPhenotypesTerms.size()); + hpPhenotypesTerms.values().forEach(term ->logger.info(" {} - {}", term.getId(), term.getLabel())); + + logger.info("Via cross-species phenotype mappings:"); + List hpHpMappings = TestPrioritiserDataFileReader.readOntologyMatchData("src/test/resources/prioritisers/hp-hp-mappings"); + logger.info(" hp-hp: " + hpHpMappings.size()); + + List hpMpMappings = TestPrioritiserDataFileReader.readOntologyMatchData("src/test/resources/prioritisers/hp-mp-mappings"); + logger.info(" hp-mp: " + hpMpMappings.size()); + + List hpZpMappings = TestPrioritiserDataFileReader.readOntologyMatchData("src/test/resources/prioritisers/hp-zp-mappings"); + logger.info(" hp-zp: " + hpZpMappings.size()); + + return TestOntologyService.builder() + .setHpIdPhenotypeTerms(hpPhenotypesTerms) + .setHumanHumanMappings(createPhenotypeMap(hpHpMappings)) + .setHumanMouseMappings(createPhenotypeMap(hpMpMappings)) + .setHumanFishMappings(createPhenotypeMap(hpZpMappings)) + .build(); + } + + private static Map> createPhenotypeMap(List crossOntologyMappings) { + return crossOntologyMappings.parallelStream().collect(Collectors.groupingBy(PhenotypeMatch::getQueryPhenotype)); + } + + private static ModelService setUpModelService() { + List diseaseModels = TestPrioritiserDataFileReader.readDiseaseModelData("src/test/resources/prioritisers/disease-models"); + logger.info(" Disease Models: " + diseaseModels.size()); + + List mouseModels = TestPrioritiserDataFileReader.readOrganismData("src/test/resources/prioritisers/mouse-models"); + logger.info(" Mouse Models: " + mouseModels.size()); + + List fishModels = TestPrioritiserDataFileReader.readOrganismData("src/test/resources/prioritisers/fish-models"); + logger.info(" Fish Models: {}", fishModels.size()); + + return new TestModelService(diseaseModels, mouseModels, fishModels); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixIOTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixIOTest.java new file mode 100644 index 000000000..81240f70e --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixIOTest.java @@ -0,0 +1,108 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.util; + +import org.jblas.FloatMatrix; +import org.junit.Test; + +import java.io.IOException; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.Map; +import java.util.TreeMap; + +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class DataMatrixIOTest { + + private final DataMatrix dataMatrix = loadMatrix(); + + public DataMatrix loadMatrix() { + FloatMatrix floatMatrix = new FloatMatrix(4, 4); + + //produce the following matrix: + // 0 1 2 3 + //0 00 01 02 03 + //1 10 11 12 13 + //2 20 21 22 23 + //3 30 31 32 33 + + //Here the single integer row is linked to an Entrez geneId in the entrezIdToRowIndex + + //floatMatrix.put(row, column, value); + floatMatrix.put(0, 0, 00); + floatMatrix.put(0, 1, 01); + floatMatrix.put(0, 2, 02); + floatMatrix.put(0, 3, 03); + + floatMatrix.put(1, 0, 10); + floatMatrix.put(1, 1, 11); + floatMatrix.put(1, 2, 12); + floatMatrix.put(1, 3, 13); + + floatMatrix.put(2, 0, 20); + floatMatrix.put(2, 1, 21); + floatMatrix.put(2, 2, 22); + floatMatrix.put(2, 3, 23); + + floatMatrix.put(3, 0, 30); + floatMatrix.put(3, 1, 31); + floatMatrix.put(3, 2, 32); + floatMatrix.put(3, 3, 33); + + Map entrezIdToRowIndex = new TreeMap<>(); + entrezIdToRowIndex.put(0000, 0); + entrezIdToRowIndex.put(1111, 1); + entrezIdToRowIndex.put(2222, 2); + entrezIdToRowIndex.put(3333, 3); + + return new DataMatrix(floatMatrix, entrezIdToRowIndex); + } + + @Test + public void testWriteMatrix() throws Exception { + Path matrixFile = Paths.get("target/testMatrix"); + Path matrixIndexFile = Paths.get("target/testMatrix_id2index"); + + DataMatrixIO.writeMatrix(dataMatrix, matrixFile.toString(), true); + + assertFileExistsThenDelete(matrixFile); + assertFileExistsThenDelete(matrixIndexFile); + } + + @Test + public void testWriteMatrixWithHeaders() throws Exception { + Path outFile = Paths.get("target/testMatrixWithRowIdAndHeader"); + DataMatrixIO.writeMatrixInclHeaderAndRowIDs(dataMatrix, outFile.toString(), true); + assertFileExistsThenDelete(outFile); + } + + private void assertFileExistsThenDelete(Path outFile) throws IOException { + assertThat(Files.exists(outFile), is(true)); + Files.delete(outFile); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixTest.java new file mode 100644 index 000000000..835a3453a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/DataMatrixTest.java @@ -0,0 +1,171 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.prioritisers.util; + +import org.jblas.FloatMatrix; +import org.jblas.ranges.IntervalRange; +import org.junit.Before; +import org.junit.Test; + +import java.util.Collections; +import java.util.List; +import java.util.Map; +import java.util.TreeMap; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class DataMatrixTest { + + private DataMatrix instance; + + private FloatMatrix floatMatrix; + private Map entrezIdToRowIndex; + + @Before + public void setUp() { + float[][] matrix = { + {0.0f, 0.1f, 0.2f, 0.3f}, + {1.0f, 1.1f, 1.2f, 1.3f}, + {2.0f, 2.1f, 2.2f, 2.3f}, + {3.0f, 3.1f, 3.2f, 3.3f} + }; + + floatMatrix = new FloatMatrix(matrix); + + //Here the single integer row is linked to an Entrez geneId in the entrezIdToRowIndex + + entrezIdToRowIndex = new TreeMap<>(); + entrezIdToRowIndex.put(0000, 0); + entrezIdToRowIndex.put(1111, 1); + entrezIdToRowIndex.put(2222, 2); + entrezIdToRowIndex.put(3333, 3); + + instance = new DataMatrix(floatMatrix, entrezIdToRowIndex); + } + + @Test + public void testEmptyMatrix() { + DataMatrix emptyMatrix = DataMatrix.EMPTY; + assertThat(emptyMatrix.containsGene(112), is(false)); + assertThat(emptyMatrix.getEntrezIdToRowIndex(), equalTo(Collections.emptyMap())); + assertThat(emptyMatrix.getMatrix().isEmpty(), is(true)); + } + + @Test + public void testGetObjectid2idx() { + assertThat(instance.getEntrezIdToRowIndex(), equalTo(entrezIdToRowIndex)); + } + + @Test + public void testGetData() { + assertThat(instance.getMatrix(), equalTo(floatMatrix)); + } + + @Test + public void testContainsGeneIsTrue() { + assertThat(instance.containsGene(0000), is(true)); + } + + @Test + public void testContainsGeneIsFalse() { + assertThat(instance.containsGene(9999), is(false)); + } + + @Test + public void testGetRowIndexForGeneInIndex() { + assertThat(instance.getRowIndexForGene(3333), equalTo(3)); + } + + @Test + public void testGetRowIndexForGeneNotInIndex() { + assertThat(instance.getRowIndexForGene(9999), nullValue()); + } + + @Test + public void testGetColumnMatrixForGeneInIndex() { + //expect a new single column matrix with 4 rows + float[] column = {0.3f, 1.3f, 2.3f, 3.3f}; + FloatMatrix geneColumn = new FloatMatrix(column); + + assertThat(instance.getColumnMatrixForGene(3333), equalTo(geneColumn)); + System.out.println("Column matrix for gene 3333:"); + for (float value : geneColumn.toArray()) { + System.out.println(value); + } + + System.out.println("Column matrix for gene 3333 multiplied by 2:"); + for (float value : instance.getColumnMatrixForGene(3333).mul(2.0f).toArray()) { + System.out.println(value); + } + + System.out.printf("%nMatrix is (%d rows * %d columns:%n)", floatMatrix.rows, floatMatrix.columns); + System.out.println(floatMatrix); + + System.out.println("Matrix as columns:"); + List columns = floatMatrix.columnsAsList(); + for (int i = 0; i < columns.size(); i++) { + FloatMatrix matrix = columns.get(i); + System.out.printf("Column %d: ", i); + for (float value : matrix.toArray()) { + System.out.printf("%f ", value); + } + System.out.println(); + } + System.out.println("Matrix as rows:"); + List rows = floatMatrix.rowsAsList(); + for (int i = 0; i < rows.size(); i++) { + FloatMatrix matrix = rows.get(i); + System.out.printf("Row %d: ", i); + for (float value : matrix.toArray()) { + System.out.printf("%f, ", value); + } + System.out.println(); + } + } + + @Test + public void testMakeSubMatrix() { + float[][] matrix = {{0.0f, 0.1f, 0.2f}, {1.0f, 1.1f, 1.2f}, {2.0f, 2.1f, 2.2f}}; + FloatMatrix expected = new FloatMatrix(matrix); + + FloatMatrix subMatrix = floatMatrix.get(new IntervalRange(0, 3), new IntervalRange(0, 3)); + System.out.println(subMatrix); + assertThat(subMatrix, equalTo(expected)); + + } + + @Test + public void testEquals() { + DataMatrix identicalMatrix = new DataMatrix(floatMatrix, entrezIdToRowIndex); + assertThat(instance, equalTo(identicalMatrix)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/HiPhiveProteinInteractionScorerTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/HiPhiveProteinInteractionScorerTest.java new file mode 100644 index 000000000..a7f1c81e0 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/prioritisers/util/HiPhiveProteinInteractionScorerTest.java @@ -0,0 +1,71 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.prioritisers.util; + +import com.google.common.collect.ArrayListMultimap; +import org.jblas.FloatMatrix; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneMatch; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class HiPhiveProteinInteractionScorerTest { + + //the Random-walk with restart (RWR) matrix used here is described in: + //http://www.sciencedirect.com/science/article/pii/S0002929708001729 + // The matrix is "a global distance measure based on random walk with restart (RWR) to define similarity between genes + // within this interaction network and to rank candidates on the basis of this similarity to known diseases genes. + // Intuitively, the RWR algorithm calculates the similarity between two genes, i and j, on the basis of the + // likelihood that a random walk through the interaction network starting at gene i will finish at gene j, whereby + // all possible paths between the two genes are taken into account. In our implementation, we let the random walk + // start with equal probability from each of the known disease-gene family members in order to search for an + // additional family member in the linkage interval" + + //here we have 6 genes in two unconnected networks: + // ((1-2-3-4), (5-6)) + // the probability of a walk hopping from one gene to its neighbour is + + float[][] matrix = { + {0.7f, 0.1f, 0.2f, 0.3f}, //gene1 + {1.0f, 0.7f, 1.2f, 1.3f}, //gene2 + {2.0f, 2.1f, 0.7f, 2.3f}, //gene3 + {3.0f, 3.1f, 3.2f, 0.7f} //gene4 + }; + FloatMatrix testMatrix = new FloatMatrix(matrix); + + + @Test + public void testEmpty() { + HiPhiveProteinInteractionScorer instance = HiPhiveProteinInteractionScorer.EMPTY; + assertThat(instance.getClosestPhenoMatchInNetwork(123), equalTo(GeneMatch.NO_HIT)); + } + + @Test + public void testEmptyInputValues() { + HiPhiveProteinInteractionScorer instance = new HiPhiveProteinInteractionScorer(DataMatrix.EMPTY, ArrayListMultimap.create(), 0.0); + assertThat(instance.getClosestPhenoMatchInNetwork(123), equalTo(GeneMatch.NO_HIT)); + } + +} \ No newline at end of file diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/HtmlResultsWriterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/HtmlResultsWriterTest.java new file mode 100644 index 000000000..88bb7003a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/HtmlResultsWriterTest.java @@ -0,0 +1,206 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import com.google.common.collect.Lists; +import de.charite.compbio.jannovar.pedigree.Genotype; +import org.junit.After; +import org.junit.Before; +import org.junit.Rule; +import org.junit.Test; +import org.junit.rules.TemporaryFolder; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.filters.*; +import org.monarchinitiative.exomiser.core.genome.TestFactory; +import org.monarchinitiative.exomiser.core.genome.TestVariantFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.frequency.Frequency; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencyData; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.frequency.RsId; +import org.monarchinitiative.exomiser.core.model.pathogenicity.*; +import org.monarchinitiative.exomiser.core.prioritisers.OMIMPriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.PhivePriority; +import org.monarchinitiative.exomiser.core.prioritisers.service.TestPriorityServiceFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; +import org.thymeleaf.TemplateEngine; + +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.Collections; +import java.util.List; + +import static org.junit.Assert.assertFalse; +import static org.junit.Assert.assertTrue; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(SpringJUnit4ClassRunner.class) +@ContextConfiguration(classes = ThymeleafConfig.class) +public class HtmlResultsWriterTest { + + private HtmlResultsWriter instance; + + /** + * The temporary folder to write files to, automatically removed after tests + * finish. + */ + @Rule + public TemporaryFolder tmpFolder = new TemporaryFolder(); + + @Autowired + private TemplateEngine templateEngine; + + private String testOutFilePrefix; + + private VariantEvaluation unAnnotatedVariantEvaluation1; + private VariantEvaluation unAnnotatedVariantEvaluation2; + + private Gene fgfr2Gene; + private Gene shhGene; + + @Before + public void setUp() { + instance = new HtmlResultsWriter(templateEngine); + + TestVariantFactory varFactory = new TestVariantFactory(); + + VariantEvaluation fgfr2MissenseVariantEvaluation = varFactory.buildVariant(10, 123256215, "T", "G", Genotype.HETEROZYGOUS, 30, 0, 2.2); + fgfr2MissenseVariantEvaluation.setFrequencyData(FrequencyData.of(RsId.valueOf(123456), Frequency.valueOf(0.01f, FrequencySource.THOUSAND_GENOMES))); + fgfr2MissenseVariantEvaluation.setPathogenicityData(PathogenicityData.of(PolyPhenScore.valueOf(1f), MutationTasterScore + .valueOf(1f), SiftScore.valueOf(0f), CaddScore.valueOf(1f))); + fgfr2MissenseVariantEvaluation.addFilterResult(FilterResult.pass(FilterType.FREQUENCY_FILTER)); + fgfr2MissenseVariantEvaluation.addFilterResult(FilterResult.pass(FilterType.VARIANT_EFFECT_FILTER)); + + //TODO: make a few canned variants from the smallTest.vcf and Pfeiffer.vcf these can then be used to run the full system without the vcf if required. + fgfr2Gene = TestFactory.newGeneFGFR2(); + fgfr2Gene.addVariant(fgfr2MissenseVariantEvaluation); + + VariantEvaluation shhIndelVariantEvaluation = varFactory.buildVariant(7, 155604800, "C", "CTT", Genotype.HETEROZYGOUS, 30, 0, 1.0); + shhGene = TestFactory.newGeneSHH(); + shhGene.addVariant(shhIndelVariantEvaluation); + + fgfr2Gene.addPriorityResult(new OMIMPriorityResult(fgfr2Gene.getEntrezGeneID(), fgfr2Gene.getGeneSymbol(), 1f, Collections.emptyList())); + shhGene.addPriorityResult(new OMIMPriorityResult(shhGene.getEntrezGeneID(), shhGene.getGeneSymbol(), 1f, Collections.emptyList())); + + unAnnotatedVariantEvaluation1 = varFactory.buildVariant(5, 10, "C", "T", Genotype.HETEROZYGOUS, 30, 0, 1.0); + unAnnotatedVariantEvaluation2 = varFactory.buildVariant(5, 10, "C", "T", Genotype.HETEROZYGOUS, 30, 0, 1.0); + } + + @After + public void tearDown() { + Paths.get(testOutFilePrefix).toFile().delete(); + } + + private AnalysisResults buildAnalysisResults(List genes, List variantEvaluations) { + return AnalysisResults.builder() + .sampleNames(Lists.newArrayList("Slartibartfast")) + .genes(genes) + .variantEvaluations(variantEvaluations) + .build(); + } + + @Test + public void testWriteTemplateWithEmptyData() throws Exception { + testOutFilePrefix = tmpFolder.newFile("testWrite.html").toString(); + + Analysis analysis = Analysis.builder().build(); + AnalysisResults analysisResults = buildAnalysisResults(Collections.emptyList(), Collections.emptyList()); + + OutputSettings settings = OutputSettings.builder().outputPrefix(testOutFilePrefix).build(); + + instance.writeFile(analysis, analysisResults, settings); + Path testOutFile = Paths.get(testOutFilePrefix); + assertTrue(testOutFile.toFile().exists()); + + } + + @Test + public void testWriteTemplateWithUnAnnotatedVariantData() throws Exception { + testOutFilePrefix = tmpFolder.newFile("testWriteTemplateWithUnAnnotatedVariantData.html").toString(); + Analysis analysis = Analysis.builder().build(); + + List variants = Lists.newArrayList(unAnnotatedVariantEvaluation1, unAnnotatedVariantEvaluation2); + AnalysisResults analysisResults = buildAnalysisResults(Collections.emptyList(), variants); + + OutputSettings settings = OutputSettings.builder().outputPrefix(testOutFilePrefix).build(); + + instance.writeFile(analysis, analysisResults, settings); + + Path testOutFile = Paths.get(testOutFilePrefix); + assertTrue(testOutFile.toFile().exists()); + } + + @Test + public void testWriteTemplateWithUnAnnotatedVariantDataAndGenes() throws Exception { + testOutFilePrefix = tmpFolder.newFile("testWriteTemplateWithUnAnnotatedVariantDataAndGenes.html").toString(); + Analysis analysis = Analysis.builder().build(); + + List variants = Lists.newArrayList(unAnnotatedVariantEvaluation1, unAnnotatedVariantEvaluation2); + List genes = Lists.newArrayList(fgfr2Gene, shhGene); + AnalysisResults analysisResults = buildAnalysisResults(genes, variants); + + OutputSettings settings = OutputSettings.builder().outputPrefix(testOutFilePrefix).build(); + + instance.writeFile(analysis, analysisResults, settings); + Path testOutFile = Paths.get(testOutFilePrefix); + Files.readAllLines(testOutFile).forEach(System.out::println); + + assertTrue(testOutFile.toFile().exists()); + } + + @Test + public void testWriteTemplateWithEmptyDataAndFullAnalysis() throws Exception { + testOutFilePrefix = tmpFolder.newFile("testWrite").toString(); + + AnalysisResults analysisResults = buildAnalysisResults(Collections.emptyList(), Collections.emptyList()); + + Analysis analysis = Analysis.builder() + .hpoIds(Lists.newArrayList("HP:000001", "HP:000002")) + .addStep(new RegulatoryFeatureFilter()) + .addStep(new FrequencyFilter(0.1f)) + .addStep(new PathogenicityFilter(true)) + .addStep(new PhivePriority(TestPriorityServiceFactory.STUB_SERVICE)) + .build(); + + OutputSettings settings = OutputSettings.builder().outputPrefix(testOutFilePrefix).build(); + + String output = instance.writeString(analysis, analysisResults, settings); + + Path testOutFile = Paths.get(testOutFilePrefix); + assertFalse(output.isEmpty()); + assertTrue(testOutFile.toFile().exists()); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/OutputFormatTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/OutputFormatTest.java new file mode 100644 index 000000000..024b0ff37 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/OutputFormatTest.java @@ -0,0 +1,75 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.core.writers; + +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * Tests for {@link org.monarchinitiative.exomiser.core.writers.OutputFormat} + * + * @author Jules Jacobsen + */ +public class OutputFormatTest { + + public OutputFormatTest() { + } + + @Test + public void testValues() { + System.out.println("values"); + OutputFormat[] expResult = {OutputFormat.HTML, OutputFormat.VCF, OutputFormat.TSV_GENE, OutputFormat.TSV_VARIANT, OutputFormat.PHENOGRID}; + OutputFormat[] result = OutputFormat.values(); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testValueOf() { + String name = "VCF"; + OutputFormat expResult = OutputFormat.VCF; + OutputFormat result = OutputFormat.valueOf(name); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testGetFileExtension() { + OutputFormat instance = OutputFormat.HTML; + String expResult = "html"; + String result = instance.getFileExtension(); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testHasPhenogridJsonOutput() { + OutputFormat instance = OutputFormat.PHENOGRID; + String expResult = "phenogrid.json"; + String result = instance.getFileExtension(); + assertThat(result, equalTo(expResult)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/OutputSettingsImplTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/OutputSettingsImplTest.java new file mode 100644 index 000000000..1408043e3 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/OutputSettingsImplTest.java @@ -0,0 +1,155 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; +import org.junit.Test; + +import java.util.EnumSet; +import java.util.Set; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.is; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class OutputSettingsImplTest { + + @Test + public void testThatDefaultOutputPassVariantsOptionIsFalse() { + OutputSettings instance = OutputSettings.builder().build(); + assertThat(instance.outputPassVariantsOnly(), equalTo(false)); + } + + @Test + public void testThatBuilderProducesOutputPassVariantsOptionWhenSet() { + OutputSettings instance = OutputSettings.builder() + .outputPassVariantsOnly(true) + .build(); + assertThat(instance.outputPassVariantsOnly(), equalTo(true)); + } + + /** + * Test of getNumberOfGenesToShow method, of class ExomiserSettings. + */ + @Test + public void testThatDefaultNumberOfGenesToShowIsZero() { + OutputSettings instance = OutputSettings.builder().build(); + assertThat(instance.getNumberOfGenesToShow(), equalTo(0)); + } + + @Test + public void testThatBuilderCanSetNumberOfGenesToShow() { + int numGenes = 200; + OutputSettings instance = OutputSettings.builder() + .numberOfGenesToShow(numGenes) + .build(); + assertThat(instance.getNumberOfGenesToShow(), equalTo(numGenes)); + } + + /** + * Test of getOutputPrefix method, of class ExomiserSettings. + */ + @Test + public void testThatBuilderProducesDefaultOutFileName() { + OutputSettings instance = OutputSettings.builder().build(); + assertThat(instance.getOutputPrefix(), equalTo("")); + } + + @Test + public void testThatBuilderProducesSetOutFileName() { + String outputPrefix = "wibble"; + OutputSettings instance = OutputSettings.builder() + .outputPrefix(outputPrefix) + .build(); + assertThat(instance.getOutputPrefix(), equalTo(outputPrefix)); + } + + /** + * Test of getOutputFormats method, of class ExomiserSettings. + */ + @Test + public void testThatDefaultOutputFormatIsHtml() { + OutputSettings instance = OutputSettings.builder().build(); + assertThat(instance.getOutputFormats(), equalTo(EnumSet.of(OutputFormat.HTML))); + } + + @Test + public void testThatBuilderProducesSetOutputFormat() { + Set outputFormats = EnumSet.of(OutputFormat.TSV_GENE); + OutputSettings instance = OutputSettings.builder() + .outputFormats(outputFormats) + .build(); + assertThat(instance.getOutputFormats(), equalTo(outputFormats)); + } + + @Test + public void testHashCode() { + OutputSettings instance = OutputSettings.builder().build(); + OutputSettings other = OutputSettings.builder().build(); + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + + @Test + public void testEquals() { + OutputSettings instance = OutputSettings.builder().build(); + OutputSettings other = OutputSettings.builder().build(); + assertThat(instance, equalTo(other)); + } + + @Test + public void testToString() { + OutputSettings instance = OutputSettings.builder().build(); + System.out.println(instance); + assertThat(instance.toString().isEmpty(), is(false)); + } + + @Test + public void testCanBuildFromYaml() throws Exception { + OutputSettings instance = OutputSettings.builder().build(); + ObjectMapper mapper = new ObjectMapper(new YAMLFactory()); + + OutputSettings createdFromYaml = mapper.readValue("outputPassVariantsOnly: false\n" + + "numGenes: 0\n" + + "outputPrefix: \"\"\n" + + "outputFormats: [HTML]", + OutputSettingsImp.class); + + assertThat(instance, equalTo(createdFromYaml)); + } + + @Test + public void testCanOutputAsYaml() throws Exception { + OutputSettings instance = OutputSettings.builder().build(); + ObjectMapper mapper = new ObjectMapper(new YAMLFactory()); + String output = mapper.writeValueAsString(instance); + System.out.println(output); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterFactoryTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterFactoryTest.java new file mode 100644 index 000000000..5c267c2c3 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterFactoryTest.java @@ -0,0 +1,84 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import org.junit.Before; +import org.junit.Test; +import org.mockito.Mockito; +import org.thymeleaf.TemplateEngine; + +import static org.hamcrest.CoreMatchers.instanceOf; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class ResultsWriterFactoryTest { + + private ResultsWriterFactory instance; + + @Before + public void setUp() { + instance = new ResultsWriterFactory(Mockito.mock(TemplateEngine.class)); + } + + @Test + public void testGetHtmlResultsWriter() { + OutputFormat outputFormat = OutputFormat.HTML; + ResultsWriter result = instance.getResultsWriter(outputFormat); + assertThat(result, instanceOf(HtmlResultsWriter.class)); + + } + + @Test + public void testGetTsvGeneResults() { + OutputFormat outputFormat = OutputFormat.TSV_GENE; + ResultsWriter result = instance.getResultsWriter(outputFormat); + assertThat(result, instanceOf(TsvGeneResultsWriter.class)); + } + + @Test + public void testGetTsvVariantResultsWriter() { + OutputFormat outputFormat = OutputFormat.TSV_VARIANT; + ResultsWriter result = instance.getResultsWriter(outputFormat); + assertThat(result, instanceOf(TsvVariantResultsWriter.class)); + } + + @Test + public void testGetVcfResultsWriter() { + OutputFormat outputFormat = OutputFormat.VCF; + ResultsWriter result = instance.getResultsWriter(outputFormat); + assertThat(result, instanceOf(VcfResultsWriter.class)); + } + + @Test + public void testGetPhenoGridResultsWriter() { + OutputFormat outputFormat = OutputFormat.PHENOGRID; + ResultsWriter result = instance.getResultsWriter(outputFormat); + assertThat(result, instanceOf(PhenogridWriter.class)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterUtilsTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterUtilsTest.java new file mode 100644 index 000000000..2e975078a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/ResultsWriterUtilsTest.java @@ -0,0 +1,183 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.mockito.Mock; +import org.mockito.Mockito; +import org.mockito.runners.MockitoJUnitRunner; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.filters.FilterReport; +import org.monarchinitiative.exomiser.core.filters.PassAllVariantEffectsFilter; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.ArrayList; +import java.util.List; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +@RunWith(MockitoJUnitRunner.class) +public class ResultsWriterUtilsTest { + + private static final String DEFAULT_OUTPUT_DIR = "results"; + private final Path vcfPath = Paths.get("wibble"); + + @Mock + Gene passedGeneOne; + @Mock + Gene passedGeneTwo; + @Mock + Gene failedGene; + + @Before + public void before() { + Mockito.when(passedGeneOne.passedFilters()).thenReturn(Boolean.TRUE); + Mockito.when(passedGeneTwo.passedFilters()).thenReturn(Boolean.TRUE); + Mockito.when(failedGene.passedFilters()).thenReturn(Boolean.FALSE); + } + + private List getGenes() { + List genes = new ArrayList<>(); + genes.add(passedGeneOne); + genes.add(passedGeneTwo); + genes.add(failedGene); + return genes; + } + + @Test + public void testThatSpecifiedTsvFileExtensionIsPresent() { + OutputFormat testedFormat = OutputFormat.TSV_GENE; + OutputSettings settings = OutputSettings.builder().build(); + String expResult = String.format("%s/wibble-exomiser-results.%s", DEFAULT_OUTPUT_DIR, testedFormat.getFileExtension()); + String result = ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), testedFormat); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testThatSpecifiedVcfFileExtensionIsPresent() { + OutputFormat testedFormat = OutputFormat.VCF; + OutputSettings settings = OutputSettings.builder().build(); + String expResult = String.format("%s/wibble-exomiser-results.%s", DEFAULT_OUTPUT_DIR, testedFormat.getFileExtension()); + String result = ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), testedFormat); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testThatSpecifiedOutputFormatDoesNotOverwriteGivenOutputPrefixFileExtension() { + OutputFormat testedFormat = OutputFormat.VCF; + String outputPrefix = "/user/jules/exomes/analysis/slartibartfast.xml"; + OutputSettings settings = OutputSettings.builder().outputPrefix(outputPrefix).build(); + String expResult = String.format("%s.%s", outputPrefix, testedFormat.getFileExtension()); + String result = ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), testedFormat); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testDefaultOutputFormatIsNotDestroyedByIncorrectFileExtensionDetection() { + OutputFormat testedFormat = OutputFormat.HTML; + OutputSettings settings = OutputSettings.builder().build(); + String expResult = DEFAULT_OUTPUT_DIR + "/wibble-exomiser-results.html"; + String result = ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), testedFormat); + assertThat(result, equalTo(expResult)); + } + + @Test + public void testOutFileNameIsCombinationOfOutPrefixAndOutFormat() { + OutputFormat outFormat = OutputFormat.TSV_GENE; + String outFilePrefix = "user/subdir/geno/vcf/F0000009/F0000009.vcf"; + OutputSettings settings = OutputSettings.builder().outputPrefix(outFilePrefix).build(); + assertThat(ResultsWriterUtils.makeOutputFilename(vcfPath, settings.getOutputPrefix(), outFormat), equalTo(outFilePrefix + "." + outFormat.getFileExtension())); + } + + @Test + public void canMakeEmptyVariantTypeCounterFromEmptyVariantEvaluations() { + List variantEvaluations = new ArrayList<>(); + List variantTypeCounters = ResultsWriterUtils.makeVariantEffectCounters(variantEvaluations); + assertThat(variantTypeCounters.isEmpty(), is(false)); + + VariantEffectCount firstVariantTypeCount = variantTypeCounters.get(0); + assertThat(firstVariantTypeCount.getVariantType(), notNullValue()); + assertThat(firstVariantTypeCount.getSampleVariantTypeCounts().isEmpty(), is(true)); + } + + @Test + public void canMakeFilterReportsFromAnalysis_returnsEmptyListWhenNoFiltersAdded(){ + Analysis analysis = Analysis.builder().build(); + AnalysisResults analysisResults = AnalysisResults.builder().build(); + List results = ResultsWriterUtils.makeFilterReports(analysis, analysisResults); + + assertThat(results.isEmpty(), is(true)); + } + + @Test + public void canMakeFilterReportsFromAnalysis(){ + Analysis analysis = Analysis.builder() + .addStep(new PassAllVariantEffectsFilter()) + .build(); + AnalysisResults analysisResults = AnalysisResults.builder().build(); + List results = ResultsWriterUtils.makeFilterReports(analysis, analysisResults); + + for (FilterReport result : results) { + System.out.println(result); + } + + assertThat(results.isEmpty(), is(false)); + } + + @Test + public void testMaxPassedGenesWhereMaxGenesIsZero() { + List allPassedGenes = new ArrayList<>(); + allPassedGenes.add(passedGeneOne); + allPassedGenes.add(passedGeneTwo); + assertThat(ResultsWriterUtils.getMaxPassedGenes(getGenes(), 0), equalTo(allPassedGenes)); + } + + @Test + public void testMaxPassedGenesWhereMaxGenesIsOne() { + List onePassed = new ArrayList<>(); + onePassed.add(passedGeneOne); + assertThat(ResultsWriterUtils.getMaxPassedGenes(getGenes(), 1), equalTo(onePassed)); + } + @Test + public void testMaxPassedGenesWhereMaxGenesIsGreaterThanInputSize() { + List allPassedGenes = new ArrayList<>(); + allPassedGenes.add(passedGeneOne); + allPassedGenes.add(passedGeneTwo); + assertThat(ResultsWriterUtils.getMaxPassedGenes(getGenes(), 100), equalTo(allPassedGenes)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/TsvGeneResultsWriterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/TsvGeneResultsWriterTest.java new file mode 100644 index 000000000..3689c8c5e --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/TsvGeneResultsWriterTest.java @@ -0,0 +1,116 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.genome.TestFactory; +import org.monarchinitiative.exomiser.core.model.Gene; + +import java.nio.file.Paths; +import java.util.Arrays; +import java.util.EnumSet; +import java.util.StringJoiner; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; +import static org.junit.Assert.assertTrue; + +/** + * + * @author Jules Jacobsen + */ +public class TsvGeneResultsWriterTest { + + private static final String HEADER = new StringJoiner("\t") + .add("#GENE_SYMBOL") + .add("ENTREZ_GENE_ID") + .add("EXOMISER_GENE_PHENO_SCORE") + .add("EXOMISER_GENE_VARIANT_SCORE") + .add("EXOMISER_GENE_COMBINED_SCORE") + .add("HUMAN_PHENO_SCORE") + .add("MOUSE_PHENO_SCORE") + .add("FISH_PHENO_SCORE") + .add("WALKER_SCORE") + .add("PHIVE_ALL_SPECIES_SCORE") + .add("OMIM_SCORE") + .add("MATCHES_CANDIDATE_GENE") + .add("HUMAN_PHENO_EVIDENCE") + .add("MOUSE_PHENO_EVIDENCE") + .add("FISH_PHENO_EVIDENCE") + .add("HUMAN_PPI_EVIDENCE") + .add("MOUSE_PPI_EVIDENCE") + .add("FISH_PPI_EVIDENCE\n") + .toString(); + + private static final String FGFR2_GENE_STRING = "FGFR2 2263 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0 \n"; + private static final String RBM8A_GENE_STRING = "RBM8A 9939 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0 \n"; + + private final TsvGeneResultsWriter instance = new TsvGeneResultsWriter(); + + private AnalysisResults analysisResults; + private Analysis analysis = Analysis.builder().build(); + + @Before + public void setUp() { + Gene fgfr2 = TestFactory.newGeneFGFR2(); + Gene rbm8a = TestFactory.newGeneRBM8A(); + analysisResults = AnalysisResults.builder().genes(Arrays.asList(fgfr2, rbm8a)).build(); + } + + @Test + public void testWrite() { + OutputSettings settings = OutputSettings.builder() + .outputPrefix("testWrite") + .outputFormats(EnumSet.of(OutputFormat.TSV_GENE)) + .build(); + instance.writeFile(analysis, analysisResults, settings); + assertTrue(Paths.get("testWrite.genes.tsv").toFile().exists()); + assertTrue(Paths.get("testWrite.genes.tsv").toFile().delete()); + } + + @Test + public void testWriteString() { + OutputSettings settings = OutputSettings.builder() + .outputFormats(EnumSet.of(OutputFormat.TSV_GENE)) + .build(); + String outString = instance.writeString(analysis, analysisResults, settings); + assertThat(outString, equalTo(HEADER + FGFR2_GENE_STRING + RBM8A_GENE_STRING)); + } + + @Test + public void testWriteStringStartsWithAHeaderLine() { + OutputSettings settings = OutputSettings.builder() + .outputFormats(EnumSet.of(OutputFormat.TSV_GENE)) + .build(); + String outString = instance.writeString(analysis, analysisResults, settings); + String[] lines = outString.split("\n"); + assertThat(lines[0] + "\n", equalTo(HEADER)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/TsvVariantResultsWriterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/TsvVariantResultsWriterTest.java new file mode 100644 index 000000000..a7eef9d7d --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/TsvVariantResultsWriterTest.java @@ -0,0 +1,162 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import de.charite.compbio.jannovar.pedigree.Genotype; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.genome.TestFactory; +import org.monarchinitiative.exomiser.core.genome.TestVariantFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PolyPhenScore; +import org.monarchinitiative.exomiser.core.writers.OutputSettingsImp.OutputSettingsBuilder; + +import java.nio.file.Paths; +import java.util.Arrays; +import java.util.Collections; +import java.util.EnumSet; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; +import static org.junit.Assert.assertTrue; + +/** + * + * @author Max Schubach + * @author Jules Jacobsen + */ +public class TsvVariantResultsWriterTest { + + private final TestVariantFactory varFactory = new TestVariantFactory(); + + private final TsvVariantResultsWriter instance = new TsvVariantResultsWriter(); + + private static final String VARIANT_DETAILS_HEADER = "#CHROM\tPOS\tREF\tALT\tQUAL\tFILTER\tGENOTYPE\tCOVERAGE\tFUNCTIONAL_CLASS\tHGVS\tEXOMISER_GENE\t"; + private static final String PATHOGENICITY_SCORES_HEADER = "CADD(>0.483)\tPOLYPHEN(>0.956|>0.446)\tMUTATIONTASTER(>0.94)\tSIFT(<0.06)\tREMM\t"; + private static final String FREQUENCY_DATA_HEADER = "DBSNP_ID\tMAX_FREQUENCY\tDBSNP_FREQUENCY\t" + + "EVS_EA_FREQUENCY\tEVS_AA_FREQUENCY\t" + + "EXAC_AFR_FREQ\tEXAC_AMR_FREQ\tEXAC_EAS_FREQ\tEXAC_FIN_FREQ\tEXAC_NFE_FREQ\tEXAC_SAS_FREQ\tEXAC_OTH_FREQ\t"; + private static final String EXOMISER_SCORES_HEADER = + "EXOMISER_VARIANT_SCORE\tEXOMISER_GENE_PHENO_SCORE\tEXOMISER_GENE_VARIANT_SCORE\tEXOMISER_GENE_COMBINED_SCORE\tCONTRIBUTING_VARIANT\n"; + + private static final String HEADER = VARIANT_DETAILS_HEADER + PATHOGENICITY_SCORES_HEADER + FREQUENCY_DATA_HEADER + EXOMISER_SCORES_HEADER; + + private static final String PASS_VARIANT_DETAILS = "chr10\t123256215\tT\tG\t2.2\tPASS\t0/1\t0\tmissense_variant\tFGFR2:uc021pzz.1:c.1694A>C:p.(Glu565Ala)\tFGFR2"; + private static final String FAIL_VARIANT_DETAILS = "chr7\t155604800\tC\tCTT\t1.0\tvar-effect\t0/1\t0\tframeshift_variant\tSHH:uc003wmk.1:c.16_17insAA:p.(Arg6Lysfs*6)\tSHH"; + private static final String NO_PATH_SCORES = "\t.\t.\t.\t.\t."; + private static final String NO_FREQUENCY_DATA = "\t.\t0.0\t.\t.\t.\t.\t.\t.\t.\t.\t.\t."; + private static final String PASS_VARIANT_EXOMISER_SCORES = "\t1.0\t0.0\t0.0\t0.0"; + private static final String FAIL_VARIANT_EXOMISER_SCORES = "\t0.95\t0.0\t0.0\t0.0"; + + private static final String CONTRIBUTING_VARIANT_FIELD = "\tCONTRIBUTING_VARIANT"; + private static final String NON_CONTRIBUTING_VARIANT_FIELD = "\t."; + + private static final String PASS_VARIANT_LINE = PASS_VARIANT_DETAILS + "\t.\t1.0\t.\t.\t." + NO_FREQUENCY_DATA + PASS_VARIANT_EXOMISER_SCORES + NON_CONTRIBUTING_VARIANT_FIELD +"\n"; + private static final String FAIL_VARIANT_LINE = FAIL_VARIANT_DETAILS + NO_PATH_SCORES + NO_FREQUENCY_DATA + FAIL_VARIANT_EXOMISER_SCORES + NON_CONTRIBUTING_VARIANT_FIELD + "\n"; + + private final OutputSettingsBuilder settingsBuilder = OutputSettings.builder().outputFormats(EnumSet.of(OutputFormat.TSV_VARIANT)); + private final Analysis analysis = Analysis.builder().build(); + private AnalysisResults analysisResults; + + @Before + public void before() { + Gene fgfr2 = TestFactory.newGeneFGFR2(); + fgfr2.addVariant(makePassVariant()); + + Gene shh = TestFactory.newGeneSHH(); + shh.addVariant(makeFailVariant()); + + analysisResults = AnalysisResults.builder() + .genes(Arrays.asList(fgfr2, shh)) + .build(); + } + + private VariantEvaluation makePassVariant() { + VariantEvaluation variant = varFactory.buildVariant(10, 123256215, "T", "G", Genotype.HETEROZYGOUS, 30, 0, 2.2); + variant.addFilterResult(FilterResult.pass(FilterType.VARIANT_EFFECT_FILTER)); + variant.setPathogenicityData(PathogenicityData.of(PolyPhenScore.valueOf(1f))); + return variant; + } + + private VariantEvaluation makeFailVariant() { + VariantEvaluation variant = varFactory.buildVariant(7, 155604800, "C", "CTT", Genotype.HETEROZYGOUS, 30, 0, 1.0); + variant.addFilterResult(FilterResult.fail(FilterType.VARIANT_EFFECT_FILTER)); + return variant; + } + + @Test + public void testWrite() { + OutputSettings settings = settingsBuilder.outputPrefix("testWrite").build(); + instance.writeFile(analysis, analysisResults, settings); + assertTrue(Paths.get("testWrite.variants.tsv").toFile().exists()); + assertTrue(Paths.get("testWrite.variants.tsv").toFile().delete()); + } + + @Test + public void testWriteStringContainsAllVariants() { + OutputSettings settings = settingsBuilder.build(); + String outString = instance.writeString(analysis, analysisResults, settings); + String expected = HEADER + + PASS_VARIANT_LINE + + FAIL_VARIANT_LINE; + assertThat(outString, equalTo(expected)); + } + + @Test + public void testWritePassVariantsOnlyStringContainsOnlyPassedVariants() { + OutputSettings settings = settingsBuilder.outputPassVariantsOnly(true).build(); + String outString = instance.writeString(analysis, analysisResults, settings); + String expected = HEADER + + PASS_VARIANT_LINE; + assertThat(outString, equalTo(expected)); + } + + @Test + public void testContributingVariantIsIndicated() { + OutputSettings settings = settingsBuilder.build(); + Gene fgfr2 = TestFactory.newGeneFGFR2(); + + VariantEvaluation passVariant = makePassVariant(); + passVariant.setAsContributingToGeneScore(); + fgfr2.addVariant(passVariant); + + AnalysisResults results = AnalysisResults.builder() + .genes(Collections.singletonList(fgfr2)) + .build(); + + String outString = instance.writeString(analysis, results, settings); + String expected = HEADER + + PASS_VARIANT_DETAILS + "\t.\t1.0\t.\t.\t." + NO_FREQUENCY_DATA + PASS_VARIANT_EXOMISER_SCORES + CONTRIBUTING_VARIANT_FIELD + "\n"; + assertThat(outString, equalTo(expected)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCountTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCountTest.java new file mode 100644 index 000000000..0add618f6 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/VariantEffectCountTest.java @@ -0,0 +1,76 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import org.junit.Before; +import org.junit.Test; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class VariantEffectCountTest { + + private VariantEffectCount instance; + + private VariantEffect effect; + private List counts; + + @Before + public void setUp() { + + effect = VariantEffect.MISSENSE_VARIANT; + + counts = new ArrayList<>(); + counts.addAll(Arrays.asList(1, 2, 3)); + + instance = new VariantEffectCount(effect, counts); + } + + @Test + public void testGetVariantType() { + assertThat(instance.getVariantType(), equalTo(effect)); + } + + @Test + public void testGetSampleVariantTypeCounts() { + assertThat(instance.getSampleVariantTypeCounts(), equalTo(counts)); + } + + @Test + public void testToString() { + assertThat(instance.toString(), equalTo("MISSENSE_VARIANT=[1, 2, 3]")); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/VcfResultsWriterTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/VcfResultsWriterTest.java new file mode 100644 index 000000000..aa35a83d7 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/VcfResultsWriterTest.java @@ -0,0 +1,345 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.core.writers; + +import de.charite.compbio.jannovar.annotation.VariantEffect; +import de.charite.compbio.jannovar.pedigree.Genotype; +import htsjdk.variant.vcf.VCFFileReader; +import htsjdk.variant.vcf.VCFHeader; +import org.junit.Before; +import org.junit.BeforeClass; +import org.junit.Rule; +import org.junit.Test; +import org.junit.rules.TemporaryFolder; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.analysis.AnalysisResults; +import org.monarchinitiative.exomiser.core.filters.FilterResult; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.genome.TestFactory; +import org.monarchinitiative.exomiser.core.genome.TestVariantFactory; +import org.monarchinitiative.exomiser.core.genome.VariantFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicityData; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PolyPhenScore; +import org.monarchinitiative.exomiser.core.prioritisers.OMIMPriorityResult; + +import java.io.File; +import java.io.IOException; +import java.net.URISyntaxException; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.Arrays; +import java.util.Collections; +import java.util.EnumSet; +import java.util.List; + +import static java.util.stream.Collectors.toList; +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * Tests for the {@link VcfResultsWriter} class. + * + * The {@link VcfResultsWriter} class needs a {@link VCFFileReader} for building its header. Thus, we base our output + * {@link VcfResultsWriter} on the minimal.vcf file from the test resources. + * + * @author Jules Jacobsen + * @author Manuel Holtgrewe + */ +public class VcfResultsWriterTest { + + private final static String EXPECTED_HEADER = "##fileformat=VCFv4.2\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##FILTER=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "##INFO=\n" + + "#CHROM\tPOS\tID\tREF\tALT\tQUAL\tFILTER\tINFO\tFORMAT\tsample\n"; + private static final String CHR10_FGFR2_PATHOGENIC_MISSENSE_VARIANT = "chr10\t123256215\t.\tT\tG\t2.20\tPASS\tExGeneSCombi=0.0;ExGeneSPheno=0.0;ExGeneSVar=0.0;ExGeneSymbId=2263;ExGeneSymbol=FGFR2;ExVarEff=missense_variant;ExVarHgvs=10:g.123256215T>G;ExVarScore=1.0;RD=30\tGT:RD\t0/1:30\n"; + + private static final FilterResult PASS_TARGET_RESULT = FilterResult.pass(FilterType.VARIANT_EFFECT_FILTER); + private static final FilterResult FAIL_TARGET_RESULT = FilterResult.fail(FilterType.VARIANT_EFFECT_FILTER); + private static final FilterResult FAIL_FREQUENCY_RESULT = FilterResult.fail(FilterType.FREQUENCY_FILTER); + + private final TestVariantFactory varFactory = new TestVariantFactory(); + + private final VcfResultsWriter instance = new VcfResultsWriter(); + + private static VCFFileReader reader; + private VCFHeader vcfHeader; + + @Rule + public TemporaryFolder tmpFolder = new TemporaryFolder(); + + private Path outPath; + private OutputSettings settings; + + private Analysis analysis = Analysis.builder().build(); + /** VariantEvaluation objects used for testing (annotated ones). */ + private VariantEvaluation missenseVariantEvaluation; + private VariantEvaluation indelVariantEvaluation; + + /** VariantEvaluation objects used for testing (unannotated ones). */ + private VariantEvaluation unAnnotatedVariantEvaluation1; + private VariantEvaluation unAnnotatedVariantEvaluation2; + + private Gene Fgfr2Gene; + private Gene ShhGene; + + @BeforeClass + public static void loadVCFHeader() throws URISyntaxException { + final String inputFilePath = VcfResultsWriterTest.class.getResource("/minimal.vcf").toURI().getPath(); + reader = new VCFFileReader(new File(inputFilePath), false); + } + + @Before + public void setUp() throws IOException { + outPath = tmpFolder.newFile().toPath(); + settings = OutputSettings.builder() + .outputFormats(EnumSet.of(OutputFormat.VCF)) + .outputPrefix(outPath + "testWrite") + .build(); + + vcfHeader = reader.getFileHeader(); + + setUpModel(); + } + + private void setUpModel() { + setUpFgfr2Gene(); + setUpShhGene(); + unAnnotatedVariantEvaluation1 = VariantEvaluation.builder(5, 11, "AC", "AT").quality(1).build(); + unAnnotatedVariantEvaluation2 = VariantEvaluation.builder(5, 14, "T", "TG").quality(1).build(); + } + + private void setUpShhGene() { + indelVariantEvaluation = varFactory.buildVariant(7, 155604800, "C", "CTT", Genotype.HETEROZYGOUS, 30, 0, 1.0); + + ShhGene = TestFactory.newGeneSHH(); + ShhGene.addVariant(indelVariantEvaluation); + ShhGene.addPriorityResult(new OMIMPriorityResult(ShhGene.getEntrezGeneID(), ShhGene.getGeneSymbol(), 1f, Collections.emptyList())); + } + + private void setUpFgfr2Gene() { + missenseVariantEvaluation = varFactory.buildVariant(10, 123256215, "T", "G", Genotype.HETEROZYGOUS, 30, 0, 2.2); + missenseVariantEvaluation.setPathogenicityData(PathogenicityData.of(PolyPhenScore.valueOf(1f))); + + Fgfr2Gene = TestFactory.newGeneFGFR2(); + Fgfr2Gene.addVariant(missenseVariantEvaluation); + Fgfr2Gene.addPriorityResult(new OMIMPriorityResult(Fgfr2Gene.getEntrezGeneID(), Fgfr2Gene.getGeneSymbol(), 1f, Collections.emptyList())); + } + + private AnalysisResults buildAnalysisResults(Gene... genes) { + return AnalysisResults.builder() + .vcfHeader(vcfHeader) + .genes(Arrays.asList(genes)) + .build(); + } + + /* test that the extended header is written out properly */ + @Test + public void testWriteHeaderFile() { + AnalysisResults analysisResults = AnalysisResults.builder().vcfHeader(vcfHeader).build(); + assertThat(instance.writeString(analysis, analysisResults, settings), equalTo(EXPECTED_HEADER)); + } + + /* test writing out unannotated variants */ + @Test + public void testWriteUnannotatedVariants() { + AnalysisResults analysisResults = AnalysisResults.builder() + .vcfHeader(vcfHeader) + .variantEvaluations(Arrays.asList(unAnnotatedVariantEvaluation1, unAnnotatedVariantEvaluation2)) + .build(); + + String vcf = instance.writeString(analysis, analysisResults, settings); + final String expected = EXPECTED_HEADER + + "chr5\t11\t.\tAC\tAT\t1\t.\tExWarn=VARIANT_NOT_ANALYSED_NO_GENE_ANNOTATIONS\tGT\t0/1\n" + + "chr5\t14\t.\tT\tTG\t1\t.\tExWarn=VARIANT_NOT_ANALYSED_NO_GENE_ANNOTATIONS\tGT\t0/1\n"; + assertThat(vcf, equalTo(expected)); + } + + /* test writing out annotated variants in two genes */ + @Test + public void testWriteAnnotatedVariantsNoFiltersApplied() { + AnalysisResults analysisResults = buildAnalysisResults(Fgfr2Gene, ShhGene); + + String vcf = instance.writeString(analysis, analysisResults, settings); + final String expected = EXPECTED_HEADER + + "chr10\t123256215\t.\tT\tG\t2.20\t.\tExGeneSCombi=0.0;ExGeneSPheno=0.0;ExGeneSVar=0.0;ExGeneSymbId=2263;ExGeneSymbol=FGFR2;ExVarEff=missense_variant;ExVarHgvs=10:g.123256215T>G;ExVarScore=1.0;RD=30\tGT:RD\t0/1:30\n" + + "chr7\t155604800\t.\tC\tCTT\t1\t.\tExGeneSCombi=0.0;ExGeneSPheno=0.0;ExGeneSVar=0.0;ExGeneSymbId=6469;ExGeneSymbol=SHH;ExVarEff=frameshift_variant;ExVarHgvs=7:g.155604800C>CTT;ExVarScore=0.95;RD=30\tGT:RD\t0/1:30\n"; + assertThat(vcf, equalTo(expected)); + } + + @Test + public void testAnnotatedVariantGeneSymbolWhitespaceIsReplacedWithUnderscore() { + GeneIdentifier incorrectGeneSymbol = GeneIdentifier.builder() + .geneId("6469") + //this should not have spaces in the VCF file + .geneSymbol("SHH alpha spaces") + .hgncId("HGNC:10848") + .hgncSymbol("SHH") + .entrezId("6469") + .ensemblId("ENSG00000164690") + .ucscId("uc003wmk.2") + .build(); + + Gene gene = new Gene(incorrectGeneSymbol); + gene.addVariant(indelVariantEvaluation); + gene.addPriorityResult(new OMIMPriorityResult(gene.getEntrezGeneID(), gene.getGeneSymbol(), 1f, Collections.emptyList())); + + AnalysisResults analysisResults = buildAnalysisResults(gene); + + String vcf = instance.writeString(analysis, analysisResults, settings); + final String expected = EXPECTED_HEADER + + "chr7\t155604800\t.\tC\tCTT\t1\t.\tExGeneSCombi=0.0;ExGeneSPheno=0.0;ExGeneSVar=0.0;ExGeneSymbId=6469;ExGeneSymbol=SHH_alpha_spaces;ExVarEff=frameshift_variant;ExVarHgvs=7:g.155604800C>CTT;ExVarScore=0.95;RD=30\tGT:RD\t0/1:30\n"; + assertThat(vcf, equalTo(expected)); + } + + /* test writing out a variant PASSing all filters */ + @Test + public void testWritePassVariant() { + missenseVariantEvaluation.addFilterResult(PASS_TARGET_RESULT); + + AnalysisResults analysisResults = buildAnalysisResults(Fgfr2Gene); + + String vcf = instance.writeString(analysis, analysisResults, settings); + final String expected = EXPECTED_HEADER + CHR10_FGFR2_PATHOGENIC_MISSENSE_VARIANT; + assertThat(vcf, equalTo(expected)); + } + + /* test writing out a variant failing the target filter */ + @Test + public void testWriteFailTargetVariant() { + missenseVariantEvaluation.addFilterResult(FAIL_TARGET_RESULT); + + AnalysisResults analysisResults = buildAnalysisResults(Fgfr2Gene); + + String vcf = instance.writeString(analysis, analysisResults, settings); + final String expected = EXPECTED_HEADER + + "chr10\t123256215\t.\tT\tG\t2.20\tvar-effect\tExGeneSCombi=0.0;ExGeneSPheno=0.0;ExGeneSVar=0.0;ExGeneSymbId=2263;ExGeneSymbol=FGFR2;ExVarEff=missense_variant;ExVarHgvs=10:g.123256215T>G;ExVarScore=1.0;RD=30\tGT:RD\t0/1:30\n"; + assertThat(vcf, equalTo(expected)); + } + + @Test + public void testWritePassVariantsOnlyContainsOnlyPassedVariantLine() { + missenseVariantEvaluation.addFilterResult(PASS_TARGET_RESULT); + indelVariantEvaluation.addFilterResult(FAIL_TARGET_RESULT); + + AnalysisResults analysisResults = buildAnalysisResults(Fgfr2Gene, ShhGene); + + OutputSettings outputPassVariantsOnlySettings = OutputSettings.builder() + .outputFormats(EnumSet.of(OutputFormat.VCF)) + .outputPassVariantsOnly(true) + .outputPrefix(outPath + "testWrite") + .build(); + + String output = instance.writeString(analysis, analysisResults, outputPassVariantsOnlySettings); + String expected = EXPECTED_HEADER + CHR10_FGFR2_PATHOGENIC_MISSENSE_VARIANT; + assertThat(output, equalTo(expected)); + } + + @Test + public void testWritePassVariantsWithNoPassingVariants() { + missenseVariantEvaluation.addFilterResult(FAIL_TARGET_RESULT); + indelVariantEvaluation.addFilterResult(FAIL_TARGET_RESULT); + + AnalysisResults analysisResults = buildAnalysisResults(Fgfr2Gene, ShhGene); + + OutputSettings outputPassVariantsOnlySettings = OutputSettings.builder() + .outputFormats(EnumSet.of(OutputFormat.VCF)) + .outputPassVariantsOnly(true) + .outputPrefix(outPath + "testWrite") + .build(); + + String output = instance.writeString(analysis, analysisResults, outputPassVariantsOnlySettings); + assertThat(output, equalTo(EXPECTED_HEADER)); + } + + @Test + public void testAlternativeAllelesAreWrittenOnSuccessiveLines() { + TestVariantFactory varFactory = new TestVariantFactory(); + VariantEvaluation alt1 = varFactory.buildVariant(1, 120612040, "T", "TCCGCCG", Genotype.HETEROZYGOUS, 30, 0, 258.62); + VariantEvaluation alt2 = varFactory.buildVariant(1, 120612040, "T", "TCCTCCGCCG", Genotype.HOMOZYGOUS_ALT, 30, 0, 258.62); + Gene gene = new Gene("TEST", 12345); + gene.addVariant(alt1); + gene.addVariant(alt2); + + AnalysisResults analysisResults = buildAnalysisResults(gene); + + String output = instance.writeString(analysis, analysisResults, settings); + System.out.println(output); + String expected = EXPECTED_HEADER + + "chr1\t120612040\t.\tT\tTCCGCCG\t258.62\t.\tExGeneSCombi=0.0;ExGeneSPheno=0.0;ExGeneSVar=0.0;ExGeneSymbId=12345;ExGeneSymbol=TEST;ExVarEff=intergenic_variant;ExVarHgvs=1:g.120612040T>TCCGCCG;ExVarScore=0.0;RD=30\tGT:RD\t0/1:30\n" + + "chr1\t120612040\t.\tT\tTCCTCCGCCG\t258.62\t.\tExGeneSCombi=0.0;ExGeneSPheno=0.0;ExGeneSVar=0.0;ExGeneSymbId=12345;ExGeneSymbol=TEST;ExVarEff=intergenic_variant;ExVarHgvs=1:g.120612040T>TCCTCCGCCG;ExVarScore=0.0;RD=30\tGT:RD\t1/1:30\n"; + assertThat(output, equalTo(expected)); + } + + @Test + public void testHomozygousAltAlleleOutputVcfContainsConcatenatedVariantScoresOnOneLine() { + Path vcfPath = Paths.get("src/test/resources/multiAlleleGenotypes.vcf"); + VariantFactory variantFactory = TestFactory.buildDefaultVariantFactory(); + List variants = variantFactory.streamVariantEvaluations(vcfPath).collect(toList()); + variants.forEach(System.out::println); + // 1/2 HETEROZYGOUS_ALT - needs to be written back out as a single line + //TODO: Check that all alleles are analysed - i.e. 0/1, 1/1, 1/2, 0/2 and 2/2 are always represented + VariantEvaluation altAlleleOne = variants.get(3); + //change the variant effect from MISSENSE so that the score is different and the order can be tested on the output line + //variant score is 0.95 - contributes to score + altAlleleOne.setVariantEffect(VariantEffect.FRAMESHIFT_VARIANT); + altAlleleOne.setAsContributingToGeneScore(); + + //variant score is 0.6 + VariantEvaluation altAlleleTwo = variants.get(4); + + Gene gene = new Gene(altAlleleOne.getGeneSymbol(), altAlleleOne.getEntrezGeneId()); + gene.addVariant(altAlleleOne); + gene.addVariant(altAlleleTwo); + + AnalysisResults analysisResults = buildAnalysisResults(gene); + + String output = instance.writeString(analysis, analysisResults, settings); + System.out.println(output); + //expected should have concatenated variant score for multi-allele line: ExVarSCombi=0.85,0.6 + String expected = EXPECTED_HEADER + + "10\t123256215\t.\tT\tG,A\t100\t.\tExContribAltAllele=0;ExGeneSCombi=0.0;ExGeneSPheno=0.0;ExGeneSVar=0.0;ExGeneSymbId=2263;ExGeneSymbol=FGFR2;ExVarEff=frameshift_variant,missense_variant;ExVarHgvs=10:g.123256215T>G,10:g.123256215T>A;ExVarScore=0.95,0.6;GENE=FGFR2;INHERITANCE=AD;MIM=101600\tGT\t1/2\n"; + assertThat(output, equalTo(expected)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridAdaptorTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridAdaptorTest.java new file mode 100644 index 000000000..d4115b74b --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridAdaptorTest.java @@ -0,0 +1,261 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import com.google.common.collect.Lists; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.Organism; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; +import org.monarchinitiative.exomiser.core.prioritisers.HiPhivePriorityResult; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneDiseaseModel; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneModelPhenotypeMatch; +import org.monarchinitiative.exomiser.core.prioritisers.model.GeneOrthologModel; + +import java.util.*; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PhenoGridAdaptorTest { + + private PhenoGridAdaptor instance; + + private List hiPhiveResults; + private final String phenoGridId = "hiPhive specified phenotypes"; + + private PhenotypeMatch diseasePhenotypeMatch; + private final PhenoGridMatchScore diseaseScore = new PhenoGridMatchScore("hiPhive", 99, 0); + private final PhenoGridMatchTaxon diseaseTaxon = PhenoGridAdaptor.HUMAN_TAXON; + private PhenoGridMatch diseasePhenoGridMatch; + + private PhenotypeMatch mousePhenotypeMatch; + private final PhenoGridMatchScore mouseScore = new PhenoGridMatchScore("hiPhive", 88, 0); + private final PhenoGridMatchTaxon mouseTaxon = PhenoGridAdaptor.MOUSE_TAXON; + private PhenoGridMatch mousePhenoGridMatch; + + private PhenotypeMatch fishPhenotypeMatch; + private final PhenoGridMatchScore fishScore = new PhenoGridMatchScore("hiPhive", 50, 0); + private final PhenoGridMatchTaxon fishTaxon = PhenoGridAdaptor.FISH_TAXON; + private PhenoGridMatch fishPhenoGridMatch; + + private PhenotypeTerm queryTerm; + private List queryPhenotypeTerms; + private Set queryPhenotypeIds; + + private final int allModelEntrezGeneId = 12345; + private final String allModelGeneSymbol = "ALL1"; + private final double allModelScore = 0.8d; + private final double allModelWalkerScore = 0.6d; + private HiPhivePriorityResult allModelsHiPhiveResult; + + private final int onlyDiseaseEntrezGeneId = 23456; + private final String onlyDiseaseGeneSymbol = "DISEASE1"; + private final double onlyDiseaseModelScore = 0.7d; + private final double onlyDiseaseModelWalkerScore = 0.5d; + private HiPhivePriorityResult onlyDiseaseModelHiPhiveResult; + + + @Before + public void setUp() { + setUpQueryTerms(); + setUpPhenotypeMatches(); + setUpHiPhiveResults(); + instance = new PhenoGridAdaptor(); + } + + private void setUpQueryTerms() { + queryTerm = PhenotypeTerm.of("HP:0001363", "Craniosynostosis"); + queryPhenotypeTerms = Arrays.asList(queryTerm); + + queryPhenotypeIds = new LinkedHashSet<>(); + queryPhenotypeIds.add(queryTerm.getId()); + + } + + private void setUpPhenotypeMatches() { + diseasePhenotypeMatch = makeDiseasePhenotypeMatch(); + mousePhenotypeMatch = makeMousePhenotypeMatch(); + fishPhenotypeMatch = makeFishPhenotypeMatch(); + } + + private PhenotypeMatch makeDiseasePhenotypeMatch() { + PhenotypeTerm craniosynostosis = PhenotypeTerm.of("HP:0001363", "Craniosynostosis"); + return PhenotypeMatch.builder() + .query(craniosynostosis) + .match(craniosynostosis) + .lcs(craniosynostosis) + .ic(5.0) + .simj(1.0) + .score(3.0) + .build(); + } + + private PhenotypeMatch makeMousePhenotypeMatch() { + PhenotypeTerm craniosynostosis = PhenotypeTerm.of("HP:0001363", "Craniosynostosis"); + PhenotypeTerm prematureSutureClosure = PhenotypeTerm.of("MP:0000081", "premature suture closure "); + return PhenotypeMatch.builder() + .query(craniosynostosis) + .match(prematureSutureClosure) + .lcs(prematureSutureClosure) + .ic(4.0) + .simj(0.5) + .score(2.0) + .build(); + } + + private PhenotypeMatch makeFishPhenotypeMatch() { + PhenotypeTerm craniosynostosis = PhenotypeTerm.of("HP:0001363", "Craniosynostosis"); + PhenotypeTerm increasedBoneMineralisation = PhenotypeTerm.of("ZP:0006781", "abnormal(ly) increased process quality bone mineralization"); + PhenotypeTerm abnormalBoneOssification = PhenotypeTerm.of("MP:0008271", "abnormal bone ossification"); + return PhenotypeMatch.builder() + .query(craniosynostosis) + .match(increasedBoneMineralisation) + .lcs(abnormalBoneOssification) + .ic(4.6) + .simj(0.2) + .score(1.0) + .build(); + } + + private GeneModelPhenotypeMatch getDiseaseModelPhenotypeMatch() { + GeneDiseaseModel geneDiseaseModel = new GeneDiseaseModel("OMIM:00000", Organism.HUMAN, allModelEntrezGeneId, allModelGeneSymbol, "OMIM:00000", "Rare disease", Collections.emptyList()); + return new GeneModelPhenotypeMatch(0.99, geneDiseaseModel, Lists.newArrayList(diseasePhenotypeMatch)); + } + + private GeneModelPhenotypeMatch getMouseModelPhenotypeMatch() { + GeneOrthologModel mouseModel = new GeneOrthologModel("1_12345", Organism.MOUSE, allModelEntrezGeneId, allModelGeneSymbol, "MGI:00000", "All1", Collections.emptyList()); + return new GeneModelPhenotypeMatch(0.88, mouseModel, Lists.newArrayList(mousePhenotypeMatch)); + } + + private GeneModelPhenotypeMatch getFishModelPhenotypeMatch() { + GeneOrthologModel fishModel = new GeneOrthologModel("2_12345", Organism.FISH, allModelEntrezGeneId, allModelGeneSymbol, "ZDB-GENE-000000-0", "all1", Collections.emptyList()); + return new GeneModelPhenotypeMatch(0.50, fishModel, Lists.newArrayList(fishPhenotypeMatch)); + } + + private void setUpHiPhiveResults() { + List allModels = Arrays.asList(getDiseaseModelPhenotypeMatch(), getMouseModelPhenotypeMatch(), getFishModelPhenotypeMatch()); + + allModelsHiPhiveResult = new HiPhivePriorityResult(allModelEntrezGeneId, allModelGeneSymbol, allModelScore, queryPhenotypeTerms, allModels, Collections.emptyList(), allModelWalkerScore, false); + + List models = Arrays.asList(getDiseaseModelPhenotypeMatch()); + + onlyDiseaseModelHiPhiveResult = new HiPhivePriorityResult(onlyDiseaseEntrezGeneId, onlyDiseaseGeneSymbol, onlyDiseaseModelScore, queryPhenotypeTerms, models, Collections.emptyList(), onlyDiseaseModelWalkerScore, false); + + } + + @Test + public void testPhenoGridFromEmptyHiPhiveResults() { + hiPhiveResults = Collections.emptyList(); + PhenoGrid output = instance.makePhenoGridFromHiPhiveResults(phenoGridId, hiPhiveResults); + assertThat(output, notNullValue()); + PhenoGridQueryTerms queryTerms = output.getPhenoGridQueryTerms(); + assertThat(queryTerms, notNullValue()); + assertThat(queryTerms.getId(), equalTo(phenoGridId)); + assertThat(queryTerms.getPhenotypeIds().isEmpty(), is(true)); + assertThat(output.getPhenoGridMatchGroups().isEmpty(), is(true)); + } + + @Test + public void testDiseaseOnlyPhenoGridMatch() { + hiPhiveResults = new ArrayList<>(); + hiPhiveResults.add(onlyDiseaseModelHiPhiveResult); + PhenoGrid output = instance.makePhenoGridFromHiPhiveResults(phenoGridId, hiPhiveResults); + testOutputHeader(output); + + List gridMatchGroups = output.getPhenoGridMatchGroups(); + testHasExpectedNumberOfOrganismsUsedForPhenotypeComparison(1, gridMatchGroups); + testExpectedTaxonomicOrderOfPhenoGridMatchGroups(gridMatchGroups, diseaseTaxon); + testMatchesAreInDescendingScoreOrder(gridMatchGroups, diseaseScore); + testPhenoGridMatchGroupCommonValues(gridMatchGroups); + + } + + @Test + public void testPhenoGridWithHiPhiveResultContainingAllModelMatchesOneMatchGroupPerOrganism() { + hiPhiveResults = new ArrayList<>(); + hiPhiveResults.add(allModelsHiPhiveResult); + PhenoGrid output = instance.makePhenoGridFromHiPhiveResults(phenoGridId, hiPhiveResults); + testOutputHeader(output); + + List gridMatchGroups = output.getPhenoGridMatchGroups(); + testHasExpectedNumberOfOrganismsUsedForPhenotypeComparison(3, gridMatchGroups); + testExpectedTaxonomicOrderOfPhenoGridMatchGroups(gridMatchGroups, diseaseTaxon, mouseTaxon, fishTaxon); + testMatchesAreInDescendingScoreOrder(gridMatchGroups, diseaseScore, mouseScore, fishScore); + testPhenoGridMatchGroupCommonValues(gridMatchGroups); + } + + private void testHasExpectedNumberOfOrganismsUsedForPhenotypeComparison(int numberOfOrganismsUsedForPhenotypeComparison, List gridMatchGroups) { + assertThat(gridMatchGroups.size(), equalTo(numberOfOrganismsUsedForPhenotypeComparison)); + } + + private void testOutputHeader(PhenoGrid output) { + assertThat(output, notNullValue()); + PhenoGridQueryTerms queryTerms = output.getPhenoGridQueryTerms(); + assertThat(queryTerms, notNullValue()); + assertThat(queryTerms.getId(), equalTo(phenoGridId)); + assertThat(queryTerms.getPhenotypeIds(), equalTo(queryPhenotypeIds)); + } + + private void testPhenoGridMatchGroupCommonValues(List gridMatchGroups) { + for (PhenoGridMatchGroup gridMatchGroup : gridMatchGroups) { + assertThat(gridMatchGroup.getQueryPhenotypeTermIds(), equalTo(queryPhenotypeIds)); + assertThat(gridMatchGroup.getCutOff(), equalTo(10)); + List matches = gridMatchGroup.getMatches(); + assertThat(matches.size(), equalTo(1)); + } + } + + private void testMatchesAreInDescendingScoreOrder(List gridMatchGroups, PhenoGridMatchScore... matchScores) { + List expectedScores = Arrays.asList(matchScores); + + List phenogridScores = new ArrayList<>(); + for (PhenoGridMatchGroup gridMatchGroup : gridMatchGroups) { + for (PhenoGridMatch match : gridMatchGroup.getMatches()) { + phenogridScores.add(match.getScore()); + } + } + assertThat(phenogridScores, equalTo(expectedScores)); + } + + private void testExpectedTaxonomicOrderOfPhenoGridMatchGroups(List gridMatchGroups, PhenoGridMatchTaxon... taxons) { + Set expectedTaxonomicOrderOfMatchGroups = new LinkedHashSet<>(Arrays.asList(taxons)); + Set actualTaxonomicOrderOfMatchGroups = new LinkedHashSet<>(); + + for (PhenoGridMatchGroup phenoGridMatchGroup : gridMatchGroups) { + for (PhenoGridMatch match : phenoGridMatchGroup.getMatches()) { + actualTaxonomicOrderOfMatchGroups.add(match.getTaxon()); + } + } + assertThat(actualTaxonomicOrderOfMatchGroups, equalTo(expectedTaxonomicOrderOfMatchGroups)); + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchGroupTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchGroupTest.java new file mode 100644 index 000000000..bc133ac5f --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchGroupTest.java @@ -0,0 +1,88 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import org.junit.Before; +import org.junit.Test; + +import java.util.List; +import java.util.Set; +import java.util.TreeSet; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PhenoGridMatchGroupTest { + + private PhenoGridMatchGroup instance; + + private List matches; + private List queryPhenotypeTermIds; + + //what's this cutoff for? the IC? + private static final int CUTOFF = 10; + + private final TestPhenoGridObjectCache matchCache = TestPhenoGridObjectCache.getInstance(); + + @Before + public void setUp() { + matches = matchCache.getPhenoGridMatches(); + queryPhenotypeTermIds = matchCache.getQueryPhenotypeTermIds(); + + instance = new PhenoGridMatchGroup(matches, queryPhenotypeTermIds); + } + + @Test + public void testGetMatches() { + assertThat(instance.getMatches(), equalTo(matches)); + } + + @Test + public void testGetQueryPhenotypeTermIds() { + Set expectedqueryTermIds = new TreeSet<>(queryPhenotypeTermIds); + assertThat(instance.getQueryPhenotypeTermIds(), equalTo(expectedqueryTermIds)); + } + + @Test + public void testJsonOutput() { + ObjectMapper mapper = new ObjectMapper(); + mapper.configure(SerializationFeature.INDENT_OUTPUT, true); + mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); + try { + String jsonString = mapper.writeValueAsString(instance); + System.out.println(jsonString); + } catch (JsonProcessingException ex) { + System.out.println(ex); + } + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTaxonTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTaxonTest.java new file mode 100644 index 000000000..a4641258b --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTaxonTest.java @@ -0,0 +1,90 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.*; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PhenoGridMatchTaxonTest { + + private PhenoGridMatchTaxon instance; + + private String id; + private String label; + + @Before + public void setUp() { + id = "9606"; + label = "Homo sapiens"; + instance = new PhenoGridMatchTaxon(id, label); + } + + @Test + public void testGetId() { + assertThat(instance.getId(), equalTo(id)); + } + + @Test + public void testGetLabel() { + assertThat(instance.getLabel(), equalTo(label)); + } + + @Test + public void testHashCode() { + PhenoGridMatchTaxon other = new PhenoGridMatchTaxon(id, label); + assertThat(instance.hashCode(), equalTo(other.hashCode())); + } + + @Test + public void testEquals() { + PhenoGridMatchTaxon other = new PhenoGridMatchTaxon(id, label); + assertThat(instance, equalTo(other)); + } + + @Test + public void testNotEqualsOther() { + PhenoGridMatchTaxon other = new PhenoGridMatchTaxon("10090", "Mus musculus"); + assertThat(instance, not(equalTo(other))); + } + + @Test + public void testNotEqualsNull() { + assertThat(instance, not(equalTo(null))); + } + + @Test + public void testNotEqualsOtherClass() { + String other = "Homo sapiens"; + assertThat(instance.equals(other), is(false)); + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTest.java new file mode 100644 index 000000000..33e993260 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridMatchTest.java @@ -0,0 +1,123 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import org.junit.Before; +import org.junit.Test; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; + +import java.util.LinkedHashSet; +import java.util.List; +import java.util.Set; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertThat; + +/** + * + * @author Jules Jacobsen + */ +public class PhenoGridMatchTest { + + private PhenoGridMatch instance; + + private final String id = "OMIM:100000"; + private final String label = "Gruffalo Syndrome"; + private final String type = "disease"; + + private List phenotypeMatches; + private PhenoGridMatchScore score; + private PhenoGridMatchTaxon taxon; + + private final TestPhenoGridObjectCache matchCache = TestPhenoGridObjectCache.getInstance(); + + @Before + public void setUp() { + phenotypeMatches = matchCache.getPhenotypeMatches(); + + score = new PhenoGridMatchScore("hiPhive", 99, 0); + taxon = new PhenoGridMatchTaxon("NCBITaxon:10090", "Gruff gruffulus"); + + instance = new PhenoGridMatch(id, label, type, phenotypeMatches, score, taxon); + } + + @Test + public void testGetId() { + assertThat(instance.getId(), equalTo(id)); + } + + @Test + public void testGetLabel() { + assertThat(instance.getLabel(), equalTo(label)); + } + + @Test + public void testGetType() { + assertThat(instance.getType(), equalTo(type)); + } + + @Test + public void getPhenotypeMatches() { + assertThat(instance.getMatches(), equalTo(phenotypeMatches)); + } + + @Test + public void getScore() { + assertThat(instance.getScore(), equalTo(score)); + } + + @Test + public void getTaxon() { + assertThat(instance.getTaxon(), equalTo(taxon)); + } + + @Test + public void testGetQueryTermIds() { + Set queryTermIds = new LinkedHashSet(); + for (PhenotypeMatch phenotypeMatch : phenotypeMatches) { + PhenotypeTerm queryPhenotype = phenotypeMatch.getQueryPhenotype(); + queryTermIds.add(queryPhenotype.getId()); + } + assertThat(instance.getQueryTermIds(), equalTo(queryTermIds)); + } + + @Test + public void testJsonOutput() { + ObjectMapper mapper = new ObjectMapper(); + mapper.configure(SerializationFeature.INDENT_OUTPUT, true); + mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); + try { + String jsonString = mapper.writeValueAsString(instance); + System.out.println(jsonString); + } catch (JsonProcessingException ex) { + System.out.println(ex); + } + } +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridTest.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridTest.java new file mode 100644 index 000000000..b5a5b1db1 --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/PhenoGridTest.java @@ -0,0 +1,85 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import org.junit.Before; +import org.junit.Test; + +import java.util.Arrays; +import java.util.List; +import java.util.Set; +import java.util.TreeSet; + +/** + * + * @author Jules Jacobsen + */ +public class PhenoGridTest { + + private PhenoGrid instance; + + private PhenoGridQueryTerms queryTerms; + private List phenoGridMatchGroups; + + private final TestPhenoGridObjectCache testObjectCache = TestPhenoGridObjectCache.getInstance(); + + @Before + public void setUp() { + String id = "hiPhive specified phenotypes"; + Set queryTermIds= new TreeSet<>(); + queryTermIds.addAll(Arrays.asList("GRUF:111", "GRUF:222", "GRUF:333", "GRUF:444")); + + phenoGridMatchGroups = testObjectCache.getPhenoGridMatchGroups(); + + queryTerms = new PhenoGridQueryTerms(id, queryTermIds); + instance = new PhenoGrid(queryTerms, phenoGridMatchGroups); + } + + @Test + public void testGetPhenoGridQueryTerms() { + } + + @Test + public void testGetPhenoGridMatchGroups() { + } + + @Test + public void testJsonOutput() { + ObjectMapper mapper = new ObjectMapper(); + mapper.configure(SerializationFeature.INDENT_OUTPUT, true); + mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); + try { + String jsonString = mapper.writeValueAsString(instance); + System.out.println(jsonString); + } catch (JsonProcessingException ex) { + System.out.println(ex); + } + } + +} diff --git a/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/TestPhenoGridObjectCache.java b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/TestPhenoGridObjectCache.java new file mode 100644 index 000000000..eaad5791a --- /dev/null +++ b/exomiser-core/src/test/java/org/monarchinitiative/exomiser/core/writers/phenogrid/TestPhenoGridObjectCache.java @@ -0,0 +1,169 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.core.writers.phenogrid; + +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeMatch; +import org.monarchinitiative.exomiser.core.phenotype.PhenotypeTerm; + +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; + +/** + * A cache for providing pre-built objects for use in the PhenoGrid tests. + * + * @author Jules Jacobsen + */ +public class TestPhenoGridObjectCache { + + private static TestPhenoGridObjectCache instance; + + private final List queryPhenotypeTermIds; + private final List phenotypeMatches; + private final List phenoGridMatches; + private final List phenoGridMatchGroups; + + public static TestPhenoGridObjectCache getInstance() { + if (instance == null) { + instance = new TestPhenoGridObjectCache(); + } + return instance; + } + + private TestPhenoGridObjectCache() { + queryPhenotypeTermIds = Arrays.asList("GRUF:111", "GRUF:222", "GRUF:333", "GRUF:444"); + phenotypeMatches = new ArrayList<>(); + phenoGridMatches = new ArrayList<>(); + phenoGridMatchGroups = new ArrayList<>(); + + + PhenotypeMatch kneeMatch = makeKnobblyKneePhenotypeMatch(); + phenotypeMatches.add(kneeMatch); + + PhenotypeMatch prickleMatch = makePurplePricklesPhenotypeMatch(); + phenotypeMatches.add(prickleMatch); + + PhenotypeMatch tongueMatch = makeMonsterousTonguePhenotypeMatch(); + phenotypeMatches.add(tongueMatch); + + PhenotypeMatch noseMatch = makeNosePhenotypeMatch(); + phenotypeMatches.add(noseMatch); + + PhenoGridMatchTaxon gruffaloTaxon = new PhenoGridMatchTaxon("NCBITaxon:10090", "Gruff gruffulus"); + + PhenoGridMatchScore bestScore = new PhenoGridMatchScore("hiPhive", 99, 0); + PhenoGridMatch bestMatch = new PhenoGridMatch("OMIM:100000", "Gruffalo Syndrome", "disease", Arrays.asList(kneeMatch, prickleMatch, tongueMatch, noseMatch), bestScore, gruffaloTaxon); + phenoGridMatches.add(bestMatch); + + PhenoGridMatchScore goodScore = new PhenoGridMatchScore("hiPhive", 90, 1); + PhenoGridMatch goodMatch = new PhenoGridMatch("OMIM:999999", "Knobbly knees and prickly back with tongue abnormality", "disease", Arrays.asList(kneeMatch, prickleMatch, tongueMatch), goodScore, gruffaloTaxon); + phenoGridMatches.add(goodMatch); + + PhenoGridMatchTaxon dragonTaxon = new PhenoGridMatchTaxon("NCBITaxon:35670", "Draco draco"); + PhenoGridMatchScore badScore = new PhenoGridMatchScore("hiPhive", 50, 3); + PhenoGridMatch badMatch = new PhenoGridMatch("WYRMBASE:999999", "Smaug1", "gene", Arrays.asList(tongueMatch), badScore, dragonTaxon); + + + PhenoGridMatchGroup diseaseMatchGroup = new PhenoGridMatchGroup(phenoGridMatches, queryPhenotypeTermIds); + phenoGridMatchGroups.add(diseaseMatchGroup); + PhenoGridMatchGroup geneMatchGroup = new PhenoGridMatchGroup(Arrays.asList(badMatch), queryPhenotypeTermIds); + phenoGridMatchGroups.add(geneMatchGroup); + + } + + private PhenotypeMatch makeNosePhenotypeMatch() { + PhenotypeTerm poisonouslyWartyNose = PhenotypeTerm.of("GRUF:444", "Poisonously warty nose"); + PhenotypeTerm hideouslyWartyNose = PhenotypeTerm.of("GRUF:443", "Hideously warty nose"); + PhenotypeTerm wartyNose = PhenotypeTerm.of("GRUF:440", "Warty nose"); + return PhenotypeMatch.builder() + .query(poisonouslyWartyNose) + .match(hideouslyWartyNose) + .lcs(wartyNose) + .ic(2.0) + .simj(0.85) + .score(2.0) + .build(); + } + + private PhenotypeMatch makeMonsterousTonguePhenotypeMatch() { + PhenotypeTerm blackTongue = PhenotypeTerm.of("GRUF:333", "Black tongue"); + PhenotypeTerm forkedTongue = PhenotypeTerm.of("GRUF:124", "Forked tongue"); + PhenotypeTerm abnormalTongue = PhenotypeTerm.of("GRUF:120", "Abnormal tongue"); + return PhenotypeMatch.builder() + .query(blackTongue) + .match(forkedTongue) + .lcs(abnormalTongue) + .ic(3.0) + .simj(0.9) + .score(3.0) + .build(); + } + + private PhenotypeMatch makePurplePricklesPhenotypeMatch() { + PhenotypeTerm purplePrickles = PhenotypeTerm.of("GRUF:111", "Purple prickles"); + PhenotypeTerm redPrickles = PhenotypeTerm.of("GRUF:112", "Red prickles"); + PhenotypeTerm colouredPrickles = PhenotypeTerm.of("GRUF:110", "Coloured prickles"); + return PhenotypeMatch.builder() + .query(purplePrickles) + .match(redPrickles) + .lcs(colouredPrickles) + .ic(2.0) + .simj(0.7) + .score(3.0) + .build(); + } + + private PhenotypeMatch makeKnobblyKneePhenotypeMatch() { + PhenotypeTerm knobblyKnee = PhenotypeTerm.of("GRUF:222", "Knobbly knees"); + PhenotypeTerm wobblyKnee = PhenotypeTerm.of("GRUF:224", "Wobbly knees"); + PhenotypeTerm unstableKnee = PhenotypeTerm.of("GRUF:220", "Unstable knees"); + return PhenotypeMatch.builder() + .query(knobblyKnee) + .match(wobblyKnee) + .lcs(unstableKnee) + .ic(3.0) + .simj(0.9) + .score(3.0) + .build(); + } + + public List getQueryPhenotypeTermIds() { + return queryPhenotypeTermIds; + } + + public List getPhenotypeMatches() { + return phenotypeMatches; + } + + public List getPhenoGridMatches() { + return phenoGridMatches; + } + + List getPhenoGridMatchGroups() { + return phenoGridMatchGroups; + } + +} diff --git a/exomiser-core/src/test/resources/failedVariant.vcf b/exomiser-core/src/test/resources/failedVariant.vcf new file mode 100644 index 000000000..6ff053f1b --- /dev/null +++ b/exomiser-core/src/test/resources/failedVariant.vcf @@ -0,0 +1,6 @@ +##fileformat=VCFv4.1 +##Variant 1-123256213-CA-CC has failed a filter +##description=This file contains a two variants that are meant for testing. The variants overlap or are close to the transcripts defined in the TestVariantFactory. +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT manuel +1 123256213 . CA CC 100.15 filter GENE=RBM8A GT:DP 1/1:33 +1 145508800 rs12345678 T C 123.15 PASS GENE=RBM8A GT:DP 1/1:33 \ No newline at end of file diff --git a/exomiser-core/src/test/resources/local_frequency_test.tsv b/exomiser-core/src/test/resources/local_frequency_test.tsv new file mode 100644 index 000000000..3a47d187b --- /dev/null +++ b/exomiser-core/src/test/resources/local_frequency_test.tsv @@ -0,0 +1,8 @@ +##Test file for local frequency data. +##Chromosome names: 1-22, X, Y, M +##Positions should be 1-based. +##REF/ALT deletions should have a '.' character in their place. +##Frequency column should be a percentage value i.e. range 0.0 - 100.0 +##Multiple alternative alleles should be split so that each occurs on its own line. +#CHR POS REF ALT FREQ(%) +10 123256215 T G 0.001 diff --git a/exomiser-core/src/test/resources/log4j2.xml b/exomiser-core/src/test/resources/log4j2.xml index 266775898..523dbd5a3 100644 --- a/exomiser-core/src/test/resources/log4j2.xml +++ b/exomiser-core/src/test/resources/log4j2.xml @@ -1,4 +1,24 @@ + + diff --git a/exomiser-core/src/test/resources/logback.groovy b/exomiser-core/src/test/resources/logback.groovy index 7cf645022..8b3598421 100644 --- a/exomiser-core/src/test/resources/logback.groovy +++ b/exomiser-core/src/test/resources/logback.groovy @@ -1,10 +1,30 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + appender("CONSOLE", ConsoleAppender) { encoder(PatternLayoutEncoder) { pattern = "%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger - %msg%n" } } -logger("de.charite.compbio.exomiser", INFO) +logger("org.monarchinitiative.exomiser", INFO) logger("org.thymeleaf", ERROR) root(INFO, ["CONSOLE"]) \ No newline at end of file diff --git a/exomiser-core/src/test/resources/malformedPedTestFileWithSpaces.ped b/exomiser-core/src/test/resources/malformedPedTestFileWithSpaces.ped deleted file mode 100644 index 1e7177b81..000000000 --- a/exomiser-core/src/test/resources/malformedPedTestFileWithSpaces.ped +++ /dev/null @@ -1,3 +0,0 @@ -1 Eva 0 0 9 1 -1 Adam 0 0 1 1 -1 Seth Adam Eva 1 2 \ No newline at end of file diff --git a/exomiser-core/src/test/resources/multiFamilyTest.ped b/exomiser-core/src/test/resources/pedMultiFamily.ped similarity index 100% rename from exomiser-core/src/test/resources/multiFamilyTest.ped rename to exomiser-core/src/test/resources/pedMultiFamily.ped diff --git a/exomiser-core/src/test/resources/invalidPedTestFile.ped b/exomiser-core/src/test/resources/pedNotValid.ped similarity index 100% rename from exomiser-core/src/test/resources/invalidPedTestFile.ped rename to exomiser-core/src/test/resources/pedNotValid.ped diff --git a/exomiser-core/src/test/resources/validPedTestFile.ped b/exomiser-core/src/test/resources/pedValid.ped similarity index 100% rename from exomiser-core/src/test/resources/validPedTestFile.ped rename to exomiser-core/src/test/resources/pedValid.ped diff --git a/exomiser-core/src/test/resources/pedWithSpaces.ped b/exomiser-core/src/test/resources/pedWithSpaces.ped new file mode 100644 index 000000000..e7aff7a78 --- /dev/null +++ b/exomiser-core/src/test/resources/pedWithSpaces.ped @@ -0,0 +1,3 @@ +1 Eva 0 0 2 1 +1 Adam 0 0 1 1 +1 Seth Adam Eva 1 2 \ No newline at end of file diff --git a/exomiser-core/src/test/resources/prioritisers/disease-models b/exomiser-core/src/test/resources/prioritisers/disease-models new file mode 100644 index 000000000..d52dfb609 --- /dev/null +++ b/exomiser-core/src/test/resources/prioritisers/disease-models @@ -0,0 +1,18 @@ +HUMAN 2263 FGFR2 OMIM:609579 Scaphocephaly,maxillary retrusion,and mental retardation D U HP:0000174,HP:0000243,HP:0000256,HP:0000268,HP:0000272,HP:0000303,HP:0000316,HP:0000348,HP:0000582,HP:0000689,HP:0001249,HP:0001770,HP:0001841,HP:0002119,HP:0100543 +HUMAN 2263 FGFR2 OMIM:123790 Beare-Stevenson cutis gyrata syndrome D D HP:0000028,HP:0000048,HP:0000160,HP:0000175,HP:0000189,HP:0000238,HP:0000268,HP:0000272,HP:0000316,HP:0000364,HP:0000368,HP:0000391,HP:0000400,HP:0000452,HP:0000453,HP:0000463,HP:0000494,HP:0000508,HP:0000520,HP:0000648,HP:0000822,HP:0000956,HP:0000982,HP:0000995,HP:0001263,HP:0001274,HP:0001363,HP:0001377,HP:0001537,HP:0001545,HP:0001597,HP:0001732,HP:0001792,HP:0002093,HP:0002098,HP:0002676,HP:0003246,HP:0004450,HP:0005280,HP:0007517,HP:0009804,HP:0009906,HP:0010669,HP:0011800,HP:0100761 +HUMAN 2263 FGFR2 OMIM:101200 Apert syndrome D D HP:0000028,HP:0000126,HP:0000148,HP:0000175,HP:0000189,HP:0000193,HP:0000235,HP:0000238,HP:0000239,HP:0000244,HP:0000270,HP:0000272,HP:0000303,HP:0000316,HP:0000324,HP:0000337,HP:0000348,HP:0000365,HP:0000389,HP:0000405,HP:0000407,HP:0000444,HP:0000452,HP:0000453,HP:0000486,HP:0000494,HP:0000505,HP:0000520,HP:0000586,HP:0000648,HP:0000684,HP:0000689,HP:0000822,HP:0001061,HP:0001162,HP:0001177,HP:0001249,HP:0001274,HP:0001331,HP:0001355,HP:0001507,HP:0001629,HP:0001770,HP:0002007,HP:0002021,HP:0002032,HP:0002093,HP:0002119,HP:0002308,HP:0002564,HP:0002623,HP:0002676,HP:0003041,HP:0003422,HP:0004397,HP:0004440,HP:0004468,HP:0004487,HP:0004635,HP:0005048,HP:0005280,HP:0007099,HP:0007291,HP:0007343,HP:0007370,HP:0008111,HP:0009601,HP:0009642,HP:0009826,HP:0010554,HP:0011800,HP:0012368,HP:0100543,HP:0100615,HP:0100702,HP:0200020 +HUMAN 2263 FGFR2 OMIM:123500 Crouzon syndrome D D HP:0000174,HP:0000238,HP:0000248,HP:0000303,HP:0000316,HP:0000327,HP:0000348,HP:0000405,HP:0000413,HP:0000444,HP:0000453,HP:0000486,HP:0000505,HP:0000508,HP:0000509,HP:0000586,HP:0000612,HP:0000648,HP:0000678,HP:0000956,HP:0000995,HP:0001053,HP:0001249,HP:0001250,HP:0001363,HP:0001739,HP:0001999,HP:0002007,HP:0002076,HP:0002093,HP:0002308,HP:0002516,HP:0003319,HP:0004439,HP:0004440,HP:0004442,HP:0004443,HP:0005107,HP:0007360,HP:0010535 +HUMAN 2263 FGFR2 OMIM:101400 Saethre-Chotzen syndrome D D HP:0000028,HP:0000175,HP:0000189,HP:0000248,HP:0000263,HP:0000270,HP:0000272,HP:0000294,HP:0000316,HP:0000324,HP:0000327,HP:0000348,HP:0000365,HP:0000368,HP:0000369,HP:0000405,HP:0000407,HP:0000413,HP:0000444,HP:0000460,HP:0000486,HP:0000505,HP:0000508,HP:0000557,HP:0000586,HP:0000614,HP:0000648,HP:0000954,HP:0001156,HP:0001250,HP:0001357,HP:0001363,HP:0001770,HP:0001822,HP:0002076,HP:0002104,HP:0002342,HP:0002516,HP:0002564,HP:0002644,HP:0002650,HP:0002678,HP:0002697,HP:0002974,HP:0003002,HP:0003189,HP:0003312,HP:0004209,HP:0004322,HP:0004425,HP:0004440,HP:0004443,HP:0006101,HP:0008551,HP:0008572,HP:0009899,HP:0009951,HP:0009968,HP:0010104,HP:0011323,HP:0012368,HP:0100543 +HUMAN 2263 FGFR2 OMIM:123150 Jackson-Weiss syndrome D D HP:0000174,HP:0000272,HP:0000303,HP:0000316,HP:0000444,HP:0000486,HP:0000508,HP:0000520,HP:0001363,HP:0001770,HP:0001783,HP:0001839,HP:0001841,HP:0002007,HP:0002991,HP:0004691,HP:0006101,HP:0008080,HP:0008122,HP:0008368,HP:0009773,HP:0009891,HP:0010055,HP:0010743,HP:0011800 +HUMAN 2263 FGFR2 OMIM:613659 Gastric cancer,somatic D S HP:0012126 +HUMAN 2263 FGFR2 OMIM:149730 LADD syndrome D D HP:0000104,HP:0000112,HP:0000198,HP:0000202,HP:0000217,HP:0000235,HP:0000316,HP:0000337,HP:0000347,HP:0000348,HP:0000368,HP:0000378,HP:0000383,HP:0000396,HP:0000405,HP:0000407,HP:0000410,HP:0000453,HP:0000490,HP:0000494,HP:0000495,HP:0000505,HP:0000506,HP:0000508,HP:0000522,HP:0000579,HP:0000620,HP:0000629,HP:0000668,HP:0000670,HP:0000679,HP:0000680,HP:0000682,HP:0000691,HP:0000772,HP:0000974,HP:0001092,HP:0001177,HP:0001199,HP:0001233,HP:0001245,HP:0001841,HP:0002974,HP:0002984,HP:0003022,HP:0003974,HP:0004059,HP:0004209,HP:0005105,HP:0005707,HP:0006101,HP:0006297,HP:0007656,HP:0007732,HP:0007892,HP:0007900,HP:0008572,HP:0008678,HP:0008743,HP:0009462,HP:0009601,HP:0009637,HP:0009738,HP:0009740,HP:0009741,HP:0009804,HP:0009906,HP:0009944,HP:0010055,HP:0010286,HP:0011065,HP:0100258,HP:0100499,HP:0100533,HP:0100583,HP:0100627,HP:0200020 +HUMAN 2263 FGFR2 OMIM:207410 Antley-Bixler syndrome without genital anomalies or disordered steroidogenesis D R HP:0000059,HP:0000063,HP:0000079,HP:0000148,HP:0000160,HP:0000175,HP:0000238,HP:0000248,HP:0000260,HP:0000272,HP:0000316,HP:0000343,HP:0000368,HP:0000377,HP:0000402,HP:0000452,HP:0000453,HP:0000463,HP:0000486,HP:0000494,HP:0000520,HP:0000772,HP:0000774,HP:0001166,HP:0001249,HP:0001363,HP:0001376,HP:0001631,HP:0001838,HP:0001883,HP:0002007,HP:0002564,HP:0002644,HP:0002757,HP:0002781,HP:0002823,HP:0002980,HP:0003031,HP:0003041,HP:0003196,HP:0003275,HP:0004440,HP:0004443,HP:0005280,HP:0009891,HP:0010669,HP:0011800,HP:0012210,HP:0012385,HP:0100490 +HUMAN 2263 FGFR2 OMIM:614592 Bent bone dysplasia syndrome D D HP:0000057,HP:0000212,HP:0000272,HP:0000316,HP:0000347,HP:0000369,HP:0000894,HP:0001007,HP:0001156,HP:0001433,HP:0001591,HP:0004440,HP:0011800 +HUMAN 2263 FGFR2 ORPHANET:93258 Pfeiffer Syndrome Type 1 HP:0000174,HP:0000272,HP:0000316,HP:0000348,HP:0000365,HP:0000368,HP:0000520,HP:0001156,HP:0001770,HP:0001841,HP:0002410,HP:0002648,HP:0003196,HP:0005280,HP:0006101,HP:0009601,HP:0009602,HP:0010109 +HUMAN 2263 FGFR2 ORPHANET:93259 Pfeiffer Syndrome Type 2 HP:0000175,HP:0000272,HP:0000316,HP:0000348,HP:0000368,HP:0000413,HP:0000453,HP:0000505,HP:0000520,HP:0001156,HP:0001250,HP:0001376,HP:0001601,HP:0001770,HP:0001841,HP:0002093,HP:0002308,HP:0002410,HP:0002516,HP:0002566,HP:0002676,HP:0002779,HP:0003196,HP:0005280,HP:0006101,HP:0009601,HP:0009602,HP:0010109,HP:0100543,HP:0100589 +HUMAN 2263 FGFR2 ORPHANET:93260 Pfeiffer Syndrome Type 3 HP:0000076,HP:0000175,HP:0000272,HP:0000316,HP:0000348,HP:0000365,HP:0000368,HP:0000413,HP:0000453,HP:0000505,HP:0000520,HP:0001156,HP:0001250,HP:0001376,HP:0001601,HP:0001770,HP:0001841,HP:0002093,HP:0002308,HP:0002410,HP:0002516,HP:0002566,HP:0002648,HP:0002779,HP:0003196,HP:0005280,HP:0006101,HP:0009601,HP:0009602,HP:0010109,HP:0100542,HP:0100543,HP:0100589 +HUMAN 2263 FGFR2 OMIM:101600 Craniofacial-skeletal-dermatologic dysplasia D D HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304 +HUMAN 4920 ROR2 OMIM:113000 Brachydactyly,type B1 D D HP:0000054,HP:0000260,HP:0000270,HP:0000696,HP:0001159,HP:0001163,HP:0001629,HP:0001760,HP:0001798,HP:0001831,HP:0001841,HP:0002937,HP:0002944,HP:0002948,HP:0003026,HP:0004590,HP:0005048,HP:0005819,HP:0005831,HP:0009473,HP:0009602,HP:0009773,HP:0009835,HP:0009882,HP:0010185,HP:0010554,HP:0011304,HP:0012385 +HUMAN 4920 ROR2 OMIM:268310 Robinow syndrome,autosomal recessive D R HP:0000003,HP:0000023,HP:0000028,HP:0000054,HP:0000055,HP:0000059,HP:0000060,HP:0000075,HP:0000126,HP:0000154,HP:0000158,HP:0000174,HP:0000202,HP:0000207,HP:0000212,HP:0000219,HP:0000256,HP:0000260,HP:0000270,HP:0000272,HP:0000278,HP:0000286,HP:0000316,HP:0000322,HP:0000343,HP:0000347,HP:0000358,HP:0000365,HP:0000368,HP:0000369,HP:0000388,HP:0000431,HP:0000463,HP:0000470,HP:0000486,HP:0000494,HP:0000499,HP:0000508,HP:0000520,HP:0000527,HP:0000582,HP:0000592,HP:0000637,HP:0000678,HP:0000689,HP:0000696,HP:0000767,HP:0000768,HP:0000772,HP:0000902,HP:0000921,HP:0000954,HP:0000960,HP:0001052,HP:0001156,HP:0001171,HP:0001231,HP:0001249,HP:0001263,HP:0001537,HP:0001596,HP:0001629,HP:0001631,HP:0001636,HP:0001641,HP:0001679,HP:0001702,HP:0001705,HP:0001770,HP:0001837,HP:0001841,HP:0001852,HP:0001853,HP:0002007,HP:0002164,HP:0002205,HP:0002263,HP:0002650,HP:0002714,HP:0002750,HP:0002808,HP:0002944,HP:0002948,HP:0002983,HP:0003027,HP:0003042,HP:0003196,HP:0003272,HP:0003422,HP:0004209,HP:0004220,HP:0004279,HP:0004322,HP:0004397,HP:0004590,HP:0005048,HP:0005280,HP:0005914,HP:0006101,HP:0006482,HP:0008467,HP:0008736,HP:0009466,HP:0009602,HP:0009804,HP:0009882,HP:0009883,HP:0010292,HP:0010296,HP:0010297,HP:0010804,HP:0011069,HP:0011304,HP:0011800,HP:0012368,HP:0030084,HP:0100490,HP:0100543,HP:0200055 +HUMAN 341640 FREM2 OMIM:219000 Fraser syndrome D R HP:0000003,HP:0000028,HP:0000046,HP:0000047,HP:0000054,HP:0000057,HP:0000062,HP:0000089,HP:0000142,HP:0000148,HP:0000164,HP:0000174,HP:0000175,HP:0000183,HP:0000204,HP:0000238,HP:0000252,HP:0000316,HP:0000368,HP:0000369,HP:0000377,HP:0000378,HP:0000405,HP:0000413,HP:0000430,HP:0000431,HP:0000445,HP:0000452,HP:0000505,HP:0000528,HP:0000561,HP:0000618,HP:0000632,HP:0000636,HP:0000678,HP:0000689,HP:0000777,HP:0000813,HP:0001126,HP:0001249,HP:0001362,HP:0001537,HP:0001539,HP:0001551,HP:0001600,HP:0001602,HP:0001607,HP:0001627,HP:0001770,HP:0002006,HP:0002084,HP:0002089,HP:0002101,HP:0002223,HP:0002244,HP:0002475,HP:0002536,HP:0002564,HP:0002644,HP:0002777,HP:0003183,HP:0003191,HP:0003422,HP:0004112,HP:0004122,HP:0004378,HP:0004397,HP:0004404,HP:0005280,HP:0005325,HP:0005352,HP:0005950,HP:0006101,HP:0006610,HP:0006703,HP:0006714,HP:0007633,HP:0007925,HP:0007957,HP:0007993,HP:0008050,HP:0008056,HP:0008559,HP:0008609,HP:0008678,HP:0008736,HP:0008750,HP:0009601,HP:0009767,HP:0010297,HP:0010458,HP:0010554,HP:0100543,HP:0100589,HP:0100627 +HUMAN 341640 FREM2 ORPHANET:219000 Fraser syndrome HP:0000003,HP:0000028,HP:0000046,HP:0000047,HP:0000054,HP:0000057,HP:0000062,HP:0000089,HP:0000142,HP:0000148,HP:0000164,HP:0000174,HP:0000175,HP:0000183,HP:0000204,HP:0000238,HP:0000252,HP:0000316,HP:0000368,HP:0000369,HP:0000377,HP:0000378,HP:0000405,HP:0000413,HP:0000430,HP:0000431,HP:0000445,HP:0000452,HP:0000505,HP:0000528,HP:0000561,HP:0000618,HP:0000632,HP:0000636,HP:0000678,HP:0000689,HP:0000777,HP:0000813,HP:0001126,HP:0001249,HP:0001362,HP:0001537,HP:0001539,HP:0001551,HP:0001600,HP:0001602,HP:0001607,HP:0001627,HP:0001770,HP:0002006,HP:0002084,HP:0002089,HP:0002101,HP:0002223,HP:0002244,HP:0002475,HP:0002536,HP:0002564,HP:0002644,HP:0002777,HP:0003183,HP:0003191,HP:0003422,HP:0004112,HP:0004122,HP:0004378,HP:0004397,HP:0004404,HP:0005280,HP:0005325,HP:0005352,HP:0005950,HP:0006101,HP:0006610,HP:0006703,HP:0006714,HP:0007633,HP:0007925,HP:0007957,HP:0007993,HP:0008050,HP:0008056,HP:0008559,HP:0008609,HP:0008678,HP:0008736,HP:0008750,HP:0009601,HP:0009767,HP:0010297,HP:0010458,HP:0010554,HP:0100543,HP:0100589,HP:0100627 diff --git a/exomiser-core/src/test/resources/prioritisers/fish-models b/exomiser-core/src/test/resources/prioritisers/fish-models new file mode 100644 index 000000000..08756fb20 --- /dev/null +++ b/exomiser-core/src/test/resources/prioritisers/fish-models @@ -0,0 +1,9 @@ +FISH ZDB-GENE-030323-1_839 2263 HGNC:3689 ZDB-GENE-030323-1 fgfr2 ZP:0000954,ZP:0000956 +FISH ZDB-GENE-081119-3_1258 341640 HGNC:25396 ZDB-GENE-081119-3 frem2a ZP:0006146,ZP:0004670,ZP:0004696,ZP:0007086,ZP:0004686,ZP:0004697,ZP:0003275,ZP:0008277,ZP:0004693,ZP:0004699,ZP:0004669,ZP:0009258,ZP:0004695 +FISH ZDB-GENE-030323-1_3409 2263 HGNC:3689 ZDB-GENE-030323-1 fgfr2 ZP:0000954,ZP:0000956 +FISH ZDB-GENE-081119-4_3835 341640 HGNC:25396 ZDB-GENE-081119-4 frem2b ZP:0004670,ZP:0004671,ZP:0004669 +FISH ZDB-GENE-081119-3_4932 341640 HGNC:25396 ZDB-GENE-081119-3 frem2a ZP:0000049,ZP:0003275,ZP:0000525,ZP:0009257,ZP:0001179,ZP:0002293 +FISH ZDB-GENE-030323-1_8380 2263 HGNC:3689 ZDB-GENE-030323-1 fgfr2 ZP:0000956,ZP:0000954 +FISH ZDB-GENE-030323-1_8902 2263 HGNC:3689 ZDB-GENE-030323-1 fgfr2 ZP:0001124,ZP:0002508,ZP:0000954,ZP:0004361,ZP:0000956 +FISH ZDB-GENE-081119-3_9198 341640 HGNC:25396 ZDB-GENE-081119-3 frem2a ZP:0004669,ZP:0004670 +FISH ZDB-GENE-030323-1_9839 2263 HGNC:3689 ZDB-GENE-030323-1 fgfr2 ZP:0000222,ZP:0000458 \ No newline at end of file diff --git a/exomiser-core/src/test/resources/prioritisers/hp-hp-mappings b/exomiser-core/src/test/resources/prioritisers/hp-hp-mappings new file mode 100644 index 000000000..ee2896bc3 --- /dev/null +++ b/exomiser-core/src/test/resources/prioritisers/hp-hp-mappings @@ -0,0 +1,2913 @@ +# Test data for HP-HP mappings +# Contains the top 10 matches for the phenotypes HP:0001156, HP:0001363, HP:0011304, HP:0010055 +# +#queryTerm.getId(), queryTerm.getTerm(), queryTerm.getIc(),matchTerm.getId(), matchTerm.getTerm(), matchTerm.getIc(),lcs.getId(), lcs.getTerm(), lcs.getIc(), match.getSimJ(), match.getScore() +HP:0001156 Brachydactyly syndrome 0.000000 HP:0001156 Brachydactyly syndrome 0.000000 HP:0011927 Short digit 3.763445 1.000000 1.939960 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0011927 Short digit 0.000000 HP:0011927 Short digit 3.763445 1.000000 1.939960 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009373 Type C brachydactyly 0.000000 HP:0011927 Short digit 3.763445 0.923077 1.863853 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009370 Type A brachydactyly 0.000000 HP:0011927 Short digit 3.763445 0.923077 1.863853 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005831 Type B brachydactyly 0.000000 HP:0011927 Short digit 3.763445 0.923077 1.863853 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005872 Brachytelomesophalangy 0.000000 HP:0011927 Short digit 3.763445 0.923077 1.863853 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005863 Type E brachydactyly 0.000000 HP:0011927 Short digit 3.763445 0.923077 1.863853 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005627 Type D brachydactyly 0.000000 HP:0011927 Short digit 3.763445 0.923077 1.863853 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0006008 Unilateral brachydactyly 0.000000 HP:0011927 Short digit 3.763445 0.923077 1.863853 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009371 Type A1 brachydactyly 0.000000 HP:0011927 Short digit 3.763445 0.857143 1.796054 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009372 Type A2 brachydactyly 0.000000 HP:0011927 Short digit 3.763445 0.857143 1.796054 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009381 Short finger 0.000000 HP:0011927 Short digit 3.763445 0.521739 1.401262 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0001831 Short toe 0.000000 HP:0011927 Short digit 3.763445 0.521739 1.401262 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0001885 Short 2nd toe 0.000000 HP:0011927 Short digit 3.763445 0.480000 1.344044 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005643 Short 3rd toe 0.000000 HP:0011927 Short digit 3.763445 0.480000 1.344044 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0011917 Short 5th toe 0.000000 HP:0011927 Short digit 3.763445 0.480000 1.344044 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0008093 Short 4th toe 0.000000 HP:0011927 Short digit 3.763445 0.480000 1.344044 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009461 Short 3rd finger 0.000000 HP:0011927 Short digit 3.763445 0.461538 1.317943 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009280 Short 4th finger 0.000000 HP:0011927 Short digit 3.763445 0.461538 1.317943 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009237 Short 5th finger 0.000000 HP:0011927 Short digit 3.763445 0.461538 1.317943 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009778 Short thumb 0.000000 HP:0011927 Short digit 3.763445 0.461538 1.317943 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009536 Short 2nd finger 0.000000 HP:0011927 Short digit 3.763445 0.461538 1.317943 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005726 Thumbs hypoplastic with bulbous tips 0.000000 HP:0011927 Short digit 3.763445 0.444444 1.293306 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0010109 Short hallux 0.000000 HP:0011927 Short digit 3.763445 0.444444 1.293306 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005035 Shortening of all phalanges of the toes 0.000000 HP:0011927 Short digit 3.763445 0.428571 1.270001 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0011928 Short proximal phalanx of toe 0.000000 HP:0011927 Short digit 3.763445 0.400000 1.226938 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0003795 Short middle phalanx of toe 0.000000 HP:0011927 Short digit 3.763445 0.400000 1.226938 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0006239 Shortening of all middle phalanges of the toes 0.000000 HP:0011927 Short digit 3.763445 0.387097 1.206987 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005819 Short middle phalanx of finger 0.000000 HP:0011927 Short digit 3.763445 0.363636 1.169839 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009882 Short distal phalanx of finger 0.000000 HP:0011927 Short digit 3.763445 0.363636 1.169839 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0010241 Short proximal phalanx of finger 0.000000 HP:0011927 Short digit 3.763445 0.363636 1.169839 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0001857 Short distal phalanx of toe 0.000000 HP:0011927 Short digit 3.763445 0.352941 1.152508 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0006110 Shortening of all middle phalanges of the fingers 0.000000 HP:0011927 Short digit 3.763445 0.352941 1.152508 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0006118 Shortening of all distal phalanges of the fingers 0.000000 HP:0011927 Short digit 3.763445 0.352941 1.152508 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0006144 Shortening of all proximal phalanges of the fingers 0.000000 HP:0011927 Short digit 3.763445 0.352941 1.152508 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0005793 Shortening of all distal phalanges of the toes 0.000000 HP:0011927 Short digit 3.763445 0.342857 1.135924 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009660 Short phalanx of the thumb 0.000000 HP:0011927 Short digit 3.763445 0.333333 1.120036 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0010111 Short phalanx of hallux 0.000000 HP:0011927 Short digit 3.763445 0.324324 1.104797 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009301 Short proximal phalanx of the 4th finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009459 Short proximal phalanx of the 3rd finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009439 Short middle phalanx of the 3rd finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009295 Short middle phalanx of the 4th finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009290 Short distal phalanx of the 4th finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009226 Short proximal phalanx of the 5th finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0004180 Short distal phalanx of the 3rd finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0004220 Short middle phalanx of the 5th finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0004227 Short distal phalanx of the 5th finger 0.000000 HP:0011927 Short digit 3.763445 0.292683 1.049522 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009577 Short middle phalanx of the 2nd finger 0.000000 HP:0011927 Short digit 3.763445 0.285714 1.036952 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009597 Short proximal phalanx of the 2nd finger 0.000000 HP:0011927 Short digit 3.763445 0.285714 1.036952 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009566 Short distal phalanx of the 2nd finger 0.000000 HP:0011927 Short digit 3.763445 0.285714 1.036952 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0010103 Short distal phalanx of hallux 0.000000 HP:0011927 Short digit 3.763445 0.285714 1.036952 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009650 Short distal phalanx of the thumb 0.000000 HP:0011927 Short digit 3.763445 0.279070 1.024824 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0008083 2nd-5th toe middle phalangeal hypoplasia 0.000000 HP:0011927 Short digit 3.763445 0.279070 1.024824 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0010034 Short 1st metacarpal 0.000000 HP:0011927 Short digit 3.763445 0.279070 1.024824 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0010107 Short proximal phalanx of hallux 0.000000 HP:0011927 Short digit 3.763445 0.272727 1.013111 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0001782 Bulbous tips of toes 0.000000 HP:0011927 Short digit 3.763445 0.255319 0.980244 +HP:0001156 Brachydactyly syndrome 0.000000 HP:0009638 Short proximal phalanx of thumb 0.000000 HP:0011927 Short digit 3.763445 0.255319 0.980244 +HP:0001363 Craniosynostosis 0.000000 HP:0001363 Craniosynostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 1.000000 2.433647 +HP:0001363 Craniosynostosis 0.000000 HP:0011324 Multiple suture craniosynostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.937500 2.356368 +HP:0001363 Craniosynostosis 0.000000 HP:0004440 Coronal craniosynostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.937500 2.356368 +HP:0001363 Craniosynostosis 0.000000 HP:0004442 Sagittal craniosynostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.937500 2.356368 +HP:0001363 Craniosynostosis 0.000000 HP:0004443 Lambdoidal craniosynostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.937500 2.356368 +HP:0001363 Craniosynostosis 0.000000 HP:0011320 Unilambdoid synostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.882353 2.286013 +HP:0001363 Craniosynostosis 0.000000 HP:0011319 Bilambdoid synostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.882353 2.286013 +HP:0001363 Craniosynostosis 0.000000 HP:0011318 Bicoronal synostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.882353 2.286013 +HP:0001363 Craniosynostosis 0.000000 HP:0011315 Unicoronal synostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.882353 2.286013 +HP:0001363 Craniosynostosis 0.000000 HP:0011325 Pansynostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.882353 2.286013 +HP:0001363 Craniosynostosis 0.000000 HP:0011321 Left unilambdoid synostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.833333 2.221605 +HP:0001363 Craniosynostosis 0.000000 HP:0011322 Right unilambdoid synostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.833333 2.221605 +HP:0001363 Craniosynostosis 0.000000 HP:0011317 Right unicoronal synostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.833333 2.221605 +HP:0001363 Craniosynostosis 0.000000 HP:0011316 Left unicoronal synostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.833333 2.221605 +HP:0001363 Craniosynostosis 0.000000 HP:0005472 Orbital craniosynostosis 0.000000 HP:0001363 Craniosynostosis 5.922636 0.833333 2.221605 +HP:0001363 Craniosynostosis 0.000000 HP:0011329 Abnormality of cranial sutures 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.866667 2.063908 +HP:0001363 Craniosynostosis 0.000000 HP:0002645 Wormian bones 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.812500 1.998370 +HP:0001363 Craniosynostosis 0.000000 HP:0010823 Ridged cranial sutures 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.812500 1.998370 +HP:0001363 Craniosynostosis 0.000000 HP:0012800 Accessory cranial suture 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.812500 1.998370 +HP:0001363 Craniosynostosis 0.000000 HP:0005441 Sclerotic cranial sutures 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.812500 1.998370 +HP:0001363 Craniosynostosis 0.000000 HP:0000270 Delayed cranial suture closure 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.764706 1.938704 +HP:0001363 Craniosynostosis 0.000000 HP:0005476 Widely patent sagittal suture 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.764706 1.938704 +HP:0001363 Craniosynostosis 0.000000 HP:0005442 Widely patent coronal suture 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.764706 1.938704 +HP:0001363 Craniosynostosis 0.000000 HP:0005556 Abnormality of the metopic suture 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.722222 1.884081 +HP:0001363 Craniosynostosis 0.000000 HP:0010537 Wide cranial sutures 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.722222 1.884081 +HP:0001363 Craniosynostosis 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.800000 1.875225 +HP:0001363 Craniosynostosis 0.000000 HP:0001476 Delayed closure of the anterior fontanelle 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.684211 1.833831 +HP:0001363 Craniosynostosis 0.000000 HP:0011223 Metopic depression 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.684211 1.833831 +HP:0001363 Craniosynostosis 0.000000 HP:0011330 Metopic synostosis 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.684211 1.833831 +HP:0001363 Craniosynostosis 0.000000 HP:0005495 Metopic suture patent to nasal root 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.684211 1.833831 +HP:0001363 Craniosynostosis 0.000000 HP:0005487 Prominent metopic ridge 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.684211 1.833831 +HP:0001363 Craniosynostosis 0.000000 HP:0011328 Abnormality of fontanelles 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.750000 1.815679 +HP:0001363 Craniosynostosis 0.000000 HP:0004474 Persistent open anterior fontanelle 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.650000 1.787396 +HP:0001363 Craniosynostosis 0.000000 HP:0000236 Abnormality of the anterior fontanelle 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.705882 1.761467 +HP:0001363 Craniosynostosis 0.000000 HP:0000239 Large fontanelles 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.705882 1.761467 +HP:0001363 Craniosynostosis 0.000000 HP:0012367 Extra fontanelles 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.705882 1.761467 +HP:0001363 Craniosynostosis 0.000000 HP:0005486 Small fontanelle 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.705882 1.761467 +HP:0001363 Craniosynostosis 0.000000 HP:0005458 Premature closure of fontanelles 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.705882 1.761467 +HP:0001363 Craniosynostosis 0.000000 HP:0004492 Widely patent fontanelles and sutures 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.619048 1.744321 +HP:0001363 Craniosynostosis 0.000000 HP:0008491 Premature anterior fontanel closure 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.666667 1.711839 +HP:0001363 Craniosynostosis 0.000000 HP:0004491 Large posterior fontanelle 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.666667 1.711839 +HP:0001363 Craniosynostosis 0.000000 HP:0005498 Midline skin dimples over anterior/posterior fontanelles 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.666667 1.711839 +HP:0001363 Craniosynostosis 0.000000 HP:0005494 Premature posterior fontanelle closure 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.666667 1.711839 +HP:0001363 Craniosynostosis 0.000000 HP:0000260 Wide anterior fontanel 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.631579 1.666182 +HP:0001363 Craniosynostosis 0.000000 HP:0000237 Small anterior fontanelle 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 4.395588 0.631579 1.666182 +HP:0001363 Craniosynostosis 0.000000 HP:0002648 Abnormality of calvarial morphology 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.800000 1.650063 +HP:0001363 Craniosynostosis 0.000000 HP:0009099 Median cleft palate 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.541667 1.631663 +HP:0001363 Craniosynostosis 0.000000 HP:0001357 Plagiocephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0001362 Skull defect 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0030312 Obliteration of the calvarial diploe 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0011218 Abnormal shape of the frontal region 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0002696 Abnormality of the parietal bone 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0002691 Platybasia 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0002676 Cloverleaf skull 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0004422 Biparietal narrowing 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0000262 Turricephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0000267 Cranial asymmetry 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0000243 Trigonocephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.750000 1.597667 +HP:0001363 Craniosynostosis 0.000000 HP:0011217 Abnormal shape of the occiput 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0011326 Anterior plagiocephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0011327 Posterior plagiocephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0002682 Broad skull 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0002695 Symmetrical, oval parietal bone defects 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0002697 Parietal foramina 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0002678 Skull asymmetry 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0000263 Oxycephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0000242 Parietal bossing 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.705882 1.549964 +HP:0001363 Craniosynostosis 0.000000 HP:0002683 Abnormality of the calvaria 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.733333 1.507406 +HP:0001363 Craniosynostosis 0.000000 HP:0000268 Dolichocephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.666667 1.506295 +HP:0001363 Craniosynostosis 0.000000 HP:0000269 Prominent occiput 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.666667 1.506295 +HP:0001363 Craniosynostosis 0.000000 HP:0005469 Flat occiput 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.666667 1.506295 +HP:0001363 Craniosynostosis 0.000000 HP:0008501 Median cleft lip and palate 0.000000 HP:0011329 Abnormality of cranial sutures 4.915055 0.448276 1.484352 +HP:0001363 Craniosynostosis 0.000000 HP:0002007 Frontal bossing 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.631579 1.466120 +HP:0001363 Craniosynostosis 0.000000 HP:0002684 Thickened calvaria 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.687500 1.459540 +HP:0001363 Craniosynostosis 0.000000 HP:0010539 Thin calvarium 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.687500 1.459540 +HP:0001363 Craniosynostosis 0.000000 HP:0004437 Cranial hyperostosis 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.647059 1.415962 +HP:0001363 Craniosynostosis 0.000000 HP:0004484 Craniofacial asymmetry 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.571429 1.394559 +HP:0001363 Craniosynostosis 0.000000 HP:0005466 Frontal bone hypoplasia 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.571429 1.394559 +HP:0001363 Craniosynostosis 0.000000 HP:0005890 Hyperostosis cranialis interna 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.611111 1.376067 +HP:0001363 Craniosynostosis 0.000000 HP:0004438 Hyperostosis frontalis interna 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.611111 1.376067 +HP:0001363 Craniosynostosis 0.000000 HP:0004490 Calvarial hyperostosis 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.611111 1.376067 +HP:0001363 Craniosynostosis 0.000000 HP:0004493 Craniofacial hyperostosis 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.550000 1.305452 +HP:0001363 Craniosynostosis 0.000000 HP:0005474 Decreased calvarial ossification 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.523810 1.273992 +HP:0001363 Craniosynostosis 0.000000 HP:0005465 Facial hyperostosis 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.523810 1.273992 +HP:0001363 Craniosynostosis 0.000000 HP:0000248 Brachycephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.461538 1.253312 +HP:0001363 Craniosynostosis 0.000000 HP:0005623 Absent ossification of calvaria 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.500000 1.244700 +HP:0001363 Craniosynostosis 0.000000 HP:0004472 Mandibular hyperostosis 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.500000 1.244700 +HP:0001363 Craniosynostosis 0.000000 HP:0000250 Dense calvaria 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.500000 1.244700 +HP:0001363 Craniosynostosis 0.000000 HP:0007285 Facial palsy secondary to cranial hyperostosis 0.000000 HP:0002683 Abnormality of the calvaria 3.098556 0.500000 1.244700 +HP:0001363 Craniosynostosis 0.000000 HP:0004487 Acrobrachycephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.444444 1.229884 +HP:0001363 Craniosynostosis 0.000000 HP:0000244 Brachyturricephaly 0.000000 HP:0002648 Abnormality of calvarial morphology 3.403386 0.428571 1.207722 +HP:0011304 Broad thumb 0.000000 HP:0011304 Broad thumb 0.000000 HP:0011304 Broad thumb 7.554546 1.000000 2.748553 +HP:0011304 Broad thumb 0.000000 HP:0001222 Spatulate thumbs 0.000000 HP:0011304 Broad thumb 7.554546 0.965517 2.700748 +HP:0011304 Broad thumb 0.000000 HP:0009642 Broad distal phalanx of the thumb 0.000000 HP:0011304 Broad thumb 7.554546 0.875000 2.571036 +HP:0011304 Broad thumb 0.000000 HP:0009630 Broad proximal phalanx of the thumb 0.000000 HP:0011304 Broad thumb 7.554546 0.823529 2.494271 +HP:0011304 Broad thumb 0.000000 HP:0009768 Broad phalanges of the hand 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.857143 2.473085 +HP:0011304 Broad thumb 0.000000 HP:0006112 Expanded phalanges with widened medullary cavities 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.827586 2.430071 +HP:0011304 Broad thumb 0.000000 HP:0009547 Broad phalanges of the 2nd finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.806452 2.398842 +HP:0011304 Broad thumb 0.000000 HP:0009836 Broad distal phalanx of finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.800000 2.389227 +HP:0011304 Broad thumb 0.000000 HP:0009844 Broad middle phalanx of finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.800000 2.389227 +HP:0011304 Broad thumb 0.000000 HP:0009852 Broad proximal phalanges of the hand 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.800000 2.389227 +HP:0011304 Broad thumb 0.000000 HP:0009374 Broad phalanges of the 5th finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.774194 2.350376 +HP:0011304 Broad thumb 0.000000 HP:0009404 Broad phalanges of the 4th finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.774194 2.350376 +HP:0011304 Broad thumb 0.000000 HP:0009440 Broad phalanges of the 3rd finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.774194 2.350376 +HP:0011304 Broad thumb 0.000000 HP:0009880 Broad distal phalanges of all fingers 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.774194 2.350376 +HP:0011304 Broad thumb 0.000000 HP:0006009 Broad phalanx 0.000000 HP:0006009 Broad phalanx 6.896469 0.785714 2.327800 +HP:0011304 Broad thumb 0.000000 HP:0006200 Widened distal phalanges 0.000000 HP:0006009 Broad phalanx 6.896469 0.758621 2.287314 +HP:0011304 Broad thumb 0.000000 HP:0009581 Broad proximal phalanx of the 2nd finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.714286 2.257608 +HP:0011304 Broad thumb 0.000000 HP:0009558 Broad distal phalanx of the 2nd finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.714286 2.257608 +HP:0011304 Broad thumb 0.000000 HP:0009569 Broad middle phalanx of the 2nd finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.714286 2.257608 +HP:0011304 Broad thumb 0.000000 HP:0006095 Wide tufts of distal phalanges 0.000000 HP:0006009 Broad phalanx 6.896469 0.733333 2.248868 +HP:0011304 Broad thumb 0.000000 HP:0009310 Broad proximal phalanx of the 4th finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0009450 Broad proximal phalanx of the 3rd finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0009430 Broad middle phalanx of the 3rd finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0009422 Broad distal phalanx of the 3rd finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0009169 Broad middle phalanx of the 5th finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0009293 Broad middle phalanx of the 4th finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0009292 Broad distal phalanx of the 4th finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0009240 Broad distal phalanx of the 5th finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0009227 Broad proximal phalanx of the 5th finger 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0010027 Broad 1st metacarpal 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.685714 2.211994 +HP:0011304 Broad thumb 0.000000 HP:0010174 Broad phalanx of the toes 0.000000 HP:0006009 Broad phalanx 6.896469 0.628571 2.082047 +HP:0011304 Broad thumb 0.000000 HP:0009658 Aplasia/Hypoplasia of the phalanges of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.758621 2.079722 +HP:0011304 Broad thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.750000 2.067872 +HP:0011304 Broad thumb 0.000000 HP:0001199 Triphalangeal thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.724138 2.031906 +HP:0011304 Broad thumb 0.000000 HP:0009657 Triangular shaped thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.724138 2.031906 +HP:0011304 Broad thumb 0.000000 HP:0009618 Abnormality of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.724138 2.031906 +HP:0011304 Broad thumb 0.000000 HP:0009617 Abnormality of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.724138 2.031906 +HP:0011304 Broad thumb 0.000000 HP:0010204 Broad proximal phalanx of toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.594595 2.024995 +HP:0011304 Broad thumb 0.000000 HP:0010195 Broad middle phalanges of the toes 0.000000 HP:0006009 Broad phalanx 6.896469 0.594595 2.024995 +HP:0011304 Broad thumb 0.000000 HP:0010186 Broad distal phalanx of the toes 0.000000 HP:0006009 Broad phalanx 6.896469 0.594595 2.024995 +HP:0011304 Broad thumb 0.000000 HP:0010372 Broad phalanges of the 4th toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.578947 1.998172 +HP:0011304 Broad thumb 0.000000 HP:0010360 Broad phalanges of the 3rd toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.578947 1.998172 +HP:0011304 Broad thumb 0.000000 HP:0010384 Broad phalanges of the 5th toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.578947 1.998172 +HP:0011304 Broad thumb 0.000000 HP:0010348 Broad phalanges of the 2nd toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.578947 1.998172 +HP:0011304 Broad thumb 0.000000 HP:0010059 Broad hallux phalanx 0.000000 HP:0006009 Broad phalanx 6.896469 0.578947 1.998172 +HP:0011304 Broad thumb 0.000000 HP:0005866 Opposable triphalangeal thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.700000 1.997754 +HP:0011304 Broad thumb 0.000000 HP:0005725 Nonopposable triphalangeal thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.700000 1.997754 +HP:0011304 Broad thumb 0.000000 HP:0005707 Bilateral triphalangeal thumbs 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.700000 1.997754 +HP:0011304 Broad thumb 0.000000 HP:0009652 Bullet-shaped thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.700000 1.997754 +HP:0011304 Broad thumb 0.000000 HP:0009641 Aplasia/Hypoplasia of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.700000 1.997754 +HP:0011304 Broad thumb 0.000000 HP:0005688 Dysplastic distal thumb phalanges with a central hole 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.700000 1.997754 +HP:0011304 Broad thumb 0.000000 HP:0005895 Radial deviation of thumb terminal phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.677419 1.965267 +HP:0011304 Broad thumb 0.000000 HP:0009629 Aplasia/Hypoplasia of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.666667 1.949609 +HP:0011304 Broad thumb 0.000000 HP:0009774 Triangular shaped phalanges of the hand 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.678571 1.949012 +HP:0011304 Broad thumb 0.000000 HP:0009942 Duplication of thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.656250 1.934317 +HP:0011304 Broad thumb 0.000000 HP:0001500 Broad finger 0.000000 HP:0001500 Broad finger 6.979667 0.535714 1.933677 +HP:0011304 Broad thumb 0.000000 HP:0009654 Osteolytic defect of thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.636364 1.904784 +HP:0011304 Broad thumb 0.000000 HP:0009648 Triangular shaped distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.636364 1.904784 +HP:0011304 Broad thumb 0.000000 HP:0100431 Broad distal phalanx of the 3rd toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0100430 Broad proximal phalanx of the 5th toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0100433 Broad distal phalanx of the 5th toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0100432 Broad distal phalanx of the 4th toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0100427 Broad middle phalanx of the 5th toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0100428 Broad proximal phalanx of the 3rd toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0100425 Broad middle phalanx of the 3rd toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0100426 Broad middle phalanx of the 4th toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0100429 Broad proximal phalanx of the 4th toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0010414 Broad distal phalanx of the 2nd toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0010405 Broad middle phalanx of the 2nd toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0010396 Broad proximal phalanx of the 2nd toe 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0010077 Broad distal phalanx of the hallux 0.000000 HP:0006009 Broad phalanx 6.896469 0.523810 1.900642 +HP:0011304 Broad thumb 0.000000 HP:0009552 Aplasia/Hypoplasia of the phalanges of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.645161 1.900426 +HP:0011304 Broad thumb 0.000000 HP:0001782 Bulbous tips of toes 0.000000 HP:0009768 Broad phalanges of the hand 7.135508 0.500000 1.888850 +HP:0011304 Broad thumb 0.000000 HP:0009875 Triangular shaped distal phalanges of the hand 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.633333 1.882925 +HP:0011304 Broad thumb 0.000000 HP:0009850 Triangular shaped middle phalanges of the hand 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.633333 1.882925 +HP:0011304 Broad thumb 0.000000 HP:0009858 Triangular shaped proximal phalanges of the hand 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.633333 1.882925 +HP:0011304 Broad thumb 0.000000 HP:0009541 Abnormality of the phalanges of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.633333 1.882925 +HP:0011304 Broad thumb 0.000000 HP:0010086 Broad proximal phalanx of the hallux 0.000000 HP:0006009 Broad phalanx 6.896469 0.511628 1.878411 +HP:0011304 Broad thumb 0.000000 HP:0009643 Bullet-shaped distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.617647 1.876563 +HP:0011304 Broad thumb 0.000000 HP:0009943 Complete duplication of thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.617647 1.876563 +HP:0011304 Broad thumb 0.000000 HP:0009944 Partial duplication of thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.617647 1.876563 +HP:0011304 Broad thumb 0.000000 HP:0100922 Sclerosis of thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.617647 1.876563 +HP:0011304 Broad thumb 0.000000 HP:0009803 Short phalanx of finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.714286 1.872920 +HP:0011304 Broad thumb 0.000000 HP:0009378 Triangular shaped phalanges of the 5th finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.612903 1.852306 +HP:0011304 Broad thumb 0.000000 HP:0009407 Triangular shaped phalanges of the 4th finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.612903 1.852306 +HP:0011304 Broad thumb 0.000000 HP:0009446 Triangular shaped phalanges of the 3rd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.612903 1.852306 +HP:0011304 Broad thumb 0.000000 HP:0009546 Triangular shaped phalanges of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.612903 1.852306 +HP:0011304 Broad thumb 0.000000 HP:0001234 Hitchhiker thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.600000 1.849561 +HP:0011304 Broad thumb 0.000000 HP:0009653 Curved thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.600000 1.849561 +HP:0011304 Broad thumb 0.000000 HP:0009636 Triangular shaped proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.600000 1.849561 +HP:0011304 Broad thumb 0.000000 HP:0011910 Shortening of all phalanges of fingers 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.689655 1.840344 +HP:0011304 Broad thumb 0.000000 HP:0006045 Short pointed phalanges 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.689655 1.840344 +HP:0011304 Broad thumb 0.000000 HP:0009631 Bullet-shaped proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.583333 1.823691 +HP:0011304 Broad thumb 0.000000 HP:0009612 Duplication of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.583333 1.823691 +HP:0011304 Broad thumb 0.000000 HP:0009542 Abnormality of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.593750 1.823135 +HP:0011304 Broad thumb 0.000000 HP:0009543 Abnormality of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.593750 1.823135 +HP:0011304 Broad thumb 0.000000 HP:0009544 Abnormality of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.593750 1.823135 +HP:0011304 Broad thumb 0.000000 HP:0001230 Broad metacarpals 0.000000 HP:0005622 Broad long bones 6.342901 0.516129 1.809352 +HP:0011304 Broad thumb 0.000000 HP:0005848 Bifid thumb distal phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.567568 1.798879 +HP:0011304 Broad thumb 0.000000 HP:0009662 Abnormality of the epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.567568 1.798879 +HP:0011304 Broad thumb 0.000000 HP:0009645 Osteolytic defect of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.567568 1.798879 +HP:0011304 Broad thumb 0.000000 HP:0009613 Duplication of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.567568 1.798879 +HP:0011304 Broad thumb 0.000000 HP:0100912 Sclerosis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.567568 1.798879 +HP:0011304 Broad thumb 0.000000 HP:0006206 Hypersegmentation of proximal phalanx of second finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.575758 1.795300 +HP:0011304 Broad thumb 0.000000 HP:0009659 Partial absence of thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.564103 1.793379 +HP:0011304 Broad thumb 0.000000 HP:0010026 Aplasia/Hypoplasia of the 1st metacarpal 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.564103 1.793379 +HP:0011304 Broad thumb 0.000000 HP:0009580 Aplasia/Hypoplasia of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.571429 1.788538 +HP:0011304 Broad thumb 0.000000 HP:0009557 Aplasia/Hypoplasia of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.571429 1.788538 +HP:0011304 Broad thumb 0.000000 HP:0009568 Aplasia/Hypoplasia of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.571429 1.788538 +HP:0011304 Broad thumb 0.000000 HP:0009633 Osteolytic defect of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.552632 1.775052 +HP:0011304 Broad thumb 0.000000 HP:0009663 Abnormality of the epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.538462 1.752147 +HP:0011304 Broad thumb 0.000000 HP:0009644 Curved distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.538462 1.752147 +HP:0011304 Broad thumb 0.000000 HP:0100913 Sclerosis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.538462 1.752147 +HP:0011304 Broad thumb 0.000000 HP:0003886 Wide humerus 0.000000 HP:0005622 Broad long bones 6.342901 0.483871 1.751898 +HP:0011304 Broad thumb 0.000000 HP:0009306 Triangular shaped distal phalanx of the 4th finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009309 Triangular shaped middle phalanx of the 4th finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009315 Triangular shaped proximal phalanx of the 4th finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009456 Triangular shaped proximal phalanx of the 3rd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009436 Triangular shaped middle phalanx of the 3rd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009427 Triangular shaped distal phalanx of the 3rd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009182 Triangular shaped middle phalanx of the 5th finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009233 Triangular shaped proximal phalanx of the 5th finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009245 Triangular shaped distal phalanx of the 5th finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009587 Triangular shaped proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009575 Triangular shaped middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009550 Osteolytic defects of the phalanges of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009564 Triangular shaped distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.542857 1.743250 +HP:0011304 Broad thumb 0.000000 HP:0009606 Complete duplication of distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.525000 1.730106 +HP:0011304 Broad thumb 0.000000 HP:0009655 Patchy sclerosis of thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.525000 1.730106 +HP:0011304 Broad thumb 0.000000 HP:0009611 Bifid distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.525000 1.730106 +HP:0011304 Broad thumb 0.000000 HP:0009660 Short phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.523810 1.728144 +HP:0011304 Broad thumb 0.000000 HP:0000916 Broad clavicles 0.000000 HP:0005622 Broad long bones 6.342901 0.468750 1.724307 +HP:0011304 Broad thumb 0.000000 HP:0009379 Rhomboid or triangular shaped 5th finger distal phalanx 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.527778 1.718868 +HP:0011304 Broad thumb 0.000000 HP:0009236 Rhomboid or triangular shaped 5th finger proximal phalanx 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.527778 1.718868 +HP:0011304 Broad thumb 0.000000 HP:0005910 Rhomboid or triangular shaped 5th finger middle phalanx 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.527778 1.718868 +HP:0011304 Broad thumb 0.000000 HP:0009582 Bullet-shaped proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.527778 1.718868 +HP:0011304 Broad thumb 0.000000 HP:0009570 Bullet-shaped middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.527778 1.718868 +HP:0011304 Broad thumb 0.000000 HP:0009559 Bullet-shaped distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.527778 1.718868 +HP:0011304 Broad thumb 0.000000 HP:0100918 Sclerosis of 2nd finger phalanx 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.527778 1.718868 +HP:0011304 Broad thumb 0.000000 HP:0009608 Complete duplication of proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.512195 1.708876 +HP:0011304 Broad thumb 0.000000 HP:0009632 Curved proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.512195 1.708876 +HP:0011304 Broad thumb 0.000000 HP:0009614 Bifid proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.512195 1.708876 +HP:0011304 Broad thumb 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.607143 1.701060 +HP:0011304 Broad thumb 0.000000 HP:0009549 Curved phalanges of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.513514 1.695482 +HP:0011304 Broad thumb 0.000000 HP:0009692 Ivory epiphysis of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.500000 1.688410 +HP:0011304 Broad thumb 0.000000 HP:0009678 Enlarged epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.500000 1.688410 +HP:0011304 Broad thumb 0.000000 HP:0009676 Bracket epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.500000 1.688410 +HP:0011304 Broad thumb 0.000000 HP:0009677 Cone-shaped epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.500000 1.688410 +HP:0011304 Broad thumb 0.000000 HP:0009685 Triangular epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.500000 1.688410 +HP:0011304 Broad thumb 0.000000 HP:0009683 Small epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.500000 1.688410 +HP:0011304 Broad thumb 0.000000 HP:0005886 Aphalangy of the hands 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.586207 1.671474 +HP:0011304 Broad thumb 0.000000 HP:0009682 Pseudoepiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.488372 1.668662 +HP:0011304 Broad thumb 0.000000 HP:0009680 Irregular epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.488372 1.668662 +HP:0011304 Broad thumb 0.000000 HP:0009650 Short distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.479167 1.652861 +HP:0011304 Broad thumb 0.000000 HP:0009499 Abnormality of the epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0009584 Osteolytic defects of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0009572 Osteolytic defects of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0009561 Osteolytic defects of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0009501 Abnormality of the epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0009500 Abnormality of the epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0009945 Duplication of phalanx of 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0100908 Sclerosis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0100904 Sclerosis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0100900 Sclerosis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.487179 1.651434 +HP:0011304 Broad thumb 0.000000 HP:0003993 Broad ulna 0.000000 HP:0005622 Broad long bones 6.342901 0.428571 1.648752 +HP:0011304 Broad thumb 0.000000 HP:0003981 Broad radius 0.000000 HP:0005622 Broad long bones 6.342901 0.428571 1.648752 +HP:0011304 Broad thumb 0.000000 HP:0009835 Aplasia/Hypoplasia of the distal phalanges of the hand 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.566667 1.643381 +HP:0011304 Broad thumb 0.000000 HP:0009843 Aplasia/Hypoplasia of the middle phalanges of the hand 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.566667 1.643381 +HP:0011304 Broad thumb 0.000000 HP:0009851 Aplasia/Hypoplasia of the proximal phalanges of the hand 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.566667 1.643381 +HP:0011304 Broad thumb 0.000000 HP:0009649 Aplasia of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.468085 1.633636 +HP:0011304 Broad thumb 0.000000 HP:0009674 Triangular epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.466667 1.631160 +HP:0011304 Broad thumb 0.000000 HP:0009672 Small epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.466667 1.631160 +HP:0011304 Broad thumb 0.000000 HP:0009667 Enlarged epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.466667 1.631160 +HP:0011304 Broad thumb 0.000000 HP:0009665 Bracket epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.466667 1.631160 +HP:0011304 Broad thumb 0.000000 HP:0009666 Cone-shaped epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.466667 1.631160 +HP:0011304 Broad thumb 0.000000 HP:0009376 Aplasia/Hypoplasia of the phalanges of the 5th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.548387 1.616657 +HP:0011304 Broad thumb 0.000000 HP:0009408 Aplasia/Hypoplasia of the phalanges of the 4th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.548387 1.616657 +HP:0011304 Broad thumb 0.000000 HP:0009447 Aplasia/Hypoplasia of the phalanges of the 3rd finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.548387 1.616657 +HP:0011304 Broad thumb 0.000000 HP:0005807 Absent distal phalanges 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.548387 1.616657 +HP:0011304 Broad thumb 0.000000 HP:0009671 Pseudoepiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.456522 1.613332 +HP:0011304 Broad thumb 0.000000 HP:0009656 Symphalangism of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.456522 1.613332 +HP:0011304 Broad thumb 0.000000 HP:0009669 Irregular epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.456522 1.613332 +HP:0011304 Broad thumb 0.000000 HP:0009635 Synostosis of thumb phalanx 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.456522 1.613332 +HP:0011304 Broad thumb 0.000000 HP:0009646 Patchy sclerosis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.456522 1.613332 +HP:0011304 Broad thumb 0.000000 HP:0009583 Curved proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.463415 1.610653 +HP:0011304 Broad thumb 0.000000 HP:0009571 Curved middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.463415 1.610653 +HP:0011304 Broad thumb 0.000000 HP:0009545 Symphalangism of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.463415 1.610653 +HP:0011304 Broad thumb 0.000000 HP:0009560 Curved distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.463415 1.610653 +HP:0011304 Broad thumb 0.000000 HP:0009957 Complete duplication of the phalanges of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.463415 1.610653 +HP:0011304 Broad thumb 0.000000 HP:0009956 Partial duplication of the phalanges of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.463415 1.610653 +HP:0011304 Broad thumb 0.000000 HP:0009637 Absent proximal phalanx of thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.448980 1.599950 +HP:0011304 Broad thumb 0.000000 HP:0010034 Short 1st metacarpal 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.448980 1.599950 +HP:0011304 Broad thumb 0.000000 HP:0009551 Patchy sclerosis of 2nd finger phalanx 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.452381 1.591363 +HP:0011304 Broad thumb 0.000000 HP:0009638 Short proximal phalanx of thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.442308 1.588018 +HP:0011304 Broad thumb 0.000000 HP:0010035 Aplasia of the 1st metacarpal 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.440000 1.583869 +HP:0011304 Broad thumb 0.000000 HP:0009679 Fragmentation of the epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.437500 1.579363 +HP:0011304 Broad thumb 0.000000 HP:0009947 Duplication of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.441860 1.572749 +HP:0011304 Broad thumb 0.000000 HP:0009948 Duplication of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.441860 1.572749 +HP:0011304 Broad thumb 0.000000 HP:0009599 Abnormality of thumb epiphysis 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.545455 1.568022 +HP:0011304 Broad thumb 0.000000 HP:0009675 Absent epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.428571 1.563163 +HP:0011304 Broad thumb 0.000000 HP:0009681 Ivory epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.428571 1.563163 +HP:0011304 Broad thumb 0.000000 HP:0009684 Stippling of the epiphysis of the distal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.428571 1.563163 +HP:0011304 Broad thumb 0.000000 HP:0009634 Patchy sclerosis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.428571 1.563163 +HP:0011304 Broad thumb 0.000000 HP:0009494 Ivory epiphyses of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009534 Triangular epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009532 Small epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009503 Bracket epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009505 Enlarged epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009504 Cone-shaped epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009516 Enlarged epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009515 Cone-shaped epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009514 Bracket epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009512 Triangular epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009510 Small epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009525 Bracket epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009524 Absent epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009527 Enlarged epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009526 Cone-shaped epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009521 Small epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009523 Triangular epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0009949 Duplication of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.431818 1.554774 +HP:0011304 Broad thumb 0.000000 HP:0001172 Abnormality of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.535714 1.553957 +HP:0011304 Broad thumb 0.000000 HP:0009577 Short middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.428571 1.548918 +HP:0011304 Broad thumb 0.000000 HP:0009597 Short proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.428571 1.548918 +HP:0011304 Broad thumb 0.000000 HP:0009566 Short distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.428571 1.548918 +HP:0011304 Broad thumb 0.000000 HP:0005819 Short middle phalanx of finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.487805 1.547769 +HP:0011304 Broad thumb 0.000000 HP:0009882 Short distal phalanx of finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.487805 1.547769 +HP:0011304 Broad thumb 0.000000 HP:0010241 Short proximal phalanx of finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.487805 1.547769 +HP:0011304 Broad thumb 0.000000 HP:0009668 Fragmentation of the epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.420000 1.547453 +HP:0011304 Broad thumb 0.000000 HP:0009802 Aplasia of the phalanges of the hand 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.500000 1.543687 +HP:0011304 Broad thumb 0.000000 HP:0009694 Small thumb epiphysis 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.527778 1.542404 +HP:0011304 Broad thumb 0.000000 HP:0009689 Enlarged thumb epiphysis 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.527778 1.542404 +HP:0011304 Broad thumb 0.000000 HP:0009688 Cone-shaped epiphysis of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.527778 1.542404 +HP:0011304 Broad thumb 0.000000 HP:0009586 Symphalangism affecting the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009574 Symphalangism of middle phalanx of 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009531 Pseudoepiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009502 Absent epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009507 Irregular epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009509 Pseudoepiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009518 Irregular epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009513 Absent epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009529 Irregular epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0009520 Pseudoepiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.422222 1.537402 +HP:0011304 Broad thumb 0.000000 HP:0006110 Shortening of all middle phalanges of the fingers 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.476190 1.529231 +HP:0011304 Broad thumb 0.000000 HP:0006118 Shortening of all distal phalanges of the fingers 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.476190 1.529231 +HP:0011304 Broad thumb 0.000000 HP:0006144 Shortening of all proximal phalanges of the fingers 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.476190 1.529231 +HP:0011304 Broad thumb 0.000000 HP:0009576 Absent middle phalanx of 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.416667 1.527255 +HP:0011304 Broad thumb 0.000000 HP:0009596 Aplasia of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.416667 1.527255 +HP:0011304 Broad thumb 0.000000 HP:0001181 Adducted thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.517241 1.526930 +HP:0011304 Broad thumb 0.000000 HP:0009300 Aplasia/Hypoplasia of the proximal phalanx of the 4th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009457 Aplasia/Hypoplasia of the proximal phalanx of the 3rd finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009437 Aplasia/Hypoplasia of the middle phalanx of the 3rd finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009421 Aplasia/Hypoplasia of the distal phalanx of the 3rd finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009192 Aplasia/Hypoplasia of the proximal phalanx of the 5th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009161 Aplasia/Hypoplasia of the middle phalanx of the 5th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009299 Aplasia/Hypoplasia of the middle phalanx of the 4th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009289 Aplasia/Hypoplasia of the distal phalanx of the 4th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009239 Aplasia/Hypoplasia of the distal phalanx of the 5th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.485714 1.521474 +HP:0011304 Broad thumb 0.000000 HP:0009673 Stippling of the epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.403846 1.517403 +HP:0011304 Broad thumb 0.000000 HP:0009664 Absent epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.403846 1.517403 +HP:0011304 Broad thumb 0.000000 HP:0009769 Bullet-shaped phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.620690 1.513120 +HP:0011304 Broad thumb 0.000000 HP:0006155 Long phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.620690 1.513120 +HP:0011304 Broad thumb 0.000000 HP:0006192 Tapered phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.620690 1.513120 +HP:0011304 Broad thumb 0.000000 HP:0009565 Aplasia of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.408163 1.511589 +HP:0011304 Broad thumb 0.000000 HP:0004026 Broad radial metaphysis 0.000000 HP:0005622 Broad long bones 6.342901 0.357143 1.505099 +HP:0011304 Broad thumb 0.000000 HP:0009951 Partial duplication of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.404255 1.504335 +HP:0011304 Broad thumb 0.000000 HP:0009950 Complete duplication of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.404255 1.504335 +HP:0011304 Broad thumb 0.000000 HP:0009955 Partial duplication of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.404255 1.504335 +HP:0011304 Broad thumb 0.000000 HP:0009954 Complete duplication of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.404255 1.504335 +HP:0011304 Broad thumb 0.000000 HP:0009670 Ivory epiphysis of the proximal phalanx of the thumb 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.396226 1.503019 +HP:0011304 Broad thumb 0.000000 HP:0009696 Triangular epiphyses of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.500000 1.501266 +HP:0011304 Broad thumb 0.000000 HP:0009687 Bracket epiphyses of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.500000 1.501266 +HP:0011304 Broad thumb 0.000000 HP:0001783 Broad metatarsal 0.000000 HP:0005622 Broad long bones 6.342901 0.352941 1.496219 +HP:0011304 Broad thumb 0.000000 HP:0012107 Increased fibular diameter 0.000000 HP:0005622 Broad long bones 6.342901 0.352941 1.496219 +HP:0011304 Broad thumb 0.000000 HP:0009585 Patchy sclerosis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.395833 1.488583 +HP:0011304 Broad thumb 0.000000 HP:0009573 Patchy sclerosis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.395833 1.488583 +HP:0011304 Broad thumb 0.000000 HP:0009562 Patchy sclerosis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.395833 1.488583 +HP:0011304 Broad thumb 0.000000 HP:0009952 Complete duplication of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.395833 1.488583 +HP:0011304 Broad thumb 0.000000 HP:0009953 Partial duplication of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.395833 1.488583 +HP:0011304 Broad thumb 0.000000 HP:0005844 Rounded middle phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.600000 1.487687 +HP:0011304 Broad thumb 0.000000 HP:0009548 Bullet-shaped phalanges of the 2nd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.600000 1.487687 +HP:0011304 Broad thumb 0.000000 HP:0009691 Irregular thumb epiphysis 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.486486 1.480839 +HP:0011304 Broad thumb 0.000000 HP:0009693 Pseudoepiphysis of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.486486 1.480839 +HP:0011304 Broad thumb 0.000000 HP:0001177 Preaxial hand polydactyly 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.485714 1.479663 +HP:0011304 Broad thumb 0.000000 HP:0009603 Deviation of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.483871 1.476853 +HP:0011304 Broad thumb 0.000000 HP:0010704 1-2 finger syndactyly 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.483871 1.476853 +HP:0011304 Broad thumb 0.000000 HP:0009837 Bullet-shaped distal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0009845 Bullet-shaped middle phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0009884 Tapered distal phalanges of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0009853 Bullet-shaped proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0006127 Long proximal phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0012295 Slender middle phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0012297 Slender proximal phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0012296 Slender distal phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0012299 Long distal phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0012298 Long middle phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.580645 1.463495 +HP:0011304 Broad thumb 0.000000 HP:0009563 Distal/middle symphalangism of 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.380000 1.458508 +HP:0011304 Broad thumb 0.000000 HP:0009506 Fragmentation of the epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.380000 1.458508 +HP:0011304 Broad thumb 0.000000 HP:0009517 Fragmentation of the epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.380000 1.458508 +HP:0011304 Broad thumb 0.000000 HP:0009528 Fragmentation of the epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.380000 1.458508 +HP:0011304 Broad thumb 0.000000 HP:0010068 Broad first metatarsal 0.000000 HP:0005622 Broad long bones 6.342901 0.333333 1.454063 +HP:0011304 Broad thumb 0.000000 HP:0009622 Distally placed thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.468750 1.453594 +HP:0011304 Broad thumb 0.000000 HP:0009623 Proximal placement of thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.468750 1.453594 +HP:0011304 Broad thumb 0.000000 HP:0009530 Ivory epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.372549 1.444138 +HP:0011304 Broad thumb 0.000000 HP:0009533 Stippling of the epiphysis of the proximal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.372549 1.444138 +HP:0011304 Broad thumb 0.000000 HP:0009508 Ivory epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.372549 1.444138 +HP:0011304 Broad thumb 0.000000 HP:0009519 Ivory epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.372549 1.444138 +HP:0011304 Broad thumb 0.000000 HP:0009511 Stippling of the epiphysis of the distal phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.372549 1.444138 +HP:0011304 Broad thumb 0.000000 HP:0009522 Stippling of the epiphysis of the middle phalanx of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.372549 1.444138 +HP:0011304 Broad thumb 0.000000 HP:0009375 Bullet-shaped phalanges of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.562500 1.440447 +HP:0011304 Broad thumb 0.000000 HP:0009405 Bullet-shaped phalanges of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.562500 1.440447 +HP:0011304 Broad thumb 0.000000 HP:0009441 Bullet-shaped phalanges of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.562500 1.440447 +HP:0011304 Broad thumb 0.000000 HP:0009770 Curved phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.562500 1.440447 +HP:0011304 Broad thumb 0.000000 HP:0006224 Tapering pointed ends of distal finger phalanges 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.562500 1.440447 +HP:0011304 Broad thumb 0.000000 HP:0009579 Proximal/middle symphalangism of the 2nd finger 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.365385 1.430185 +HP:0011304 Broad thumb 0.000000 HP:0009690 Fragmentation of thumb epiphysis 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.452381 1.427989 +HP:0011304 Broad thumb 0.000000 HP:0005622 Broad long bones 0.000000 HP:0005622 Broad long bones 6.342901 0.321429 1.427863 +HP:0011304 Broad thumb 0.000000 HP:0009640 Synostosis of the proximal phalanx of the thumb with the 1st metatcarpal 0.000000 HP:0009602 Abnormality of thumb phalanx 5.701458 0.355932 1.424546 +HP:0011304 Broad thumb 0.000000 HP:0010239 Aplasia of the middle phalanx of the hand 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.425000 1.423209 +HP:0011304 Broad thumb 0.000000 HP:0010242 Aplasia of the proximal phalanges of the hand 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.425000 1.423209 +HP:0011304 Broad thumb 0.000000 HP:0009301 Short proximal phalanx of the 4th finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0009459 Short proximal phalanx of the 3rd finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0009439 Short middle phalanx of the 3rd finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0009295 Short middle phalanx of the 4th finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0009290 Short distal phalanx of the 4th finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0009226 Short proximal phalanx of the 5th finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0004180 Short distal phalanx of the 3rd finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0004220 Short middle phalanx of the 5th finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0004227 Short distal phalanx of the 5th finger 0.000000 HP:0009803 Short phalanx of finger 4.910957 0.408163 1.415793 +HP:0011304 Broad thumb 0.000000 HP:0040021 Radial deviation of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.441176 1.410193 +HP:0011304 Broad thumb 0.000000 HP:0040023 Clinodactyly of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.441176 1.410193 +HP:0011304 Broad thumb 0.000000 HP:0006156 Ulnar deviation of thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.441176 1.410193 +HP:0011304 Broad thumb 0.000000 HP:0010706 1-3 finger syndactyly 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.441176 1.410193 +HP:0011304 Broad thumb 0.000000 HP:0009881 Aplasia of the distal phalanges of the hand 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.414634 1.405745 +HP:0011304 Broad thumb 0.000000 HP:0005918 Abnormality of phalanx of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.571429 1.401024 +HP:0011304 Broad thumb 0.000000 HP:0009838 Curved distal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.529412 1.397439 +HP:0011304 Broad thumb 0.000000 HP:0009846 Curved middle phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.529412 1.397439 +HP:0011304 Broad thumb 0.000000 HP:0009854 Curved proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.529412 1.397439 +HP:0011304 Broad thumb 0.000000 HP:0009598 Symphalangism of the proximal phalanx of the 2nd finger with the 2nd metatcarpal 0.000000 HP:0009774 Triangular shaped phalanges of the hand 5.598013 0.345455 1.390633 +HP:0011304 Broad thumb 0.000000 HP:0009601 Aplasia/Hypoplasia of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.428571 1.389901 +HP:0011304 Broad thumb 0.000000 HP:0009832 Abnormality of the distal phalanx of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.551724 1.376656 +HP:0011304 Broad thumb 0.000000 HP:0009833 Abnormality of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.551724 1.376656 +HP:0011304 Broad thumb 0.000000 HP:0009834 Abnormality of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.551724 1.376656 +HP:0011304 Broad thumb 0.000000 HP:0030367 Finger hyperphalangy 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.551724 1.376656 +HP:0011304 Broad thumb 0.000000 HP:0011299 Partial absence of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.551724 1.376656 +HP:0011304 Broad thumb 0.000000 HP:0006205 Irregular phalanges 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.551724 1.376656 +HP:0011304 Broad thumb 0.000000 HP:0009695 Stippling of thumb epiphysis 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.418605 1.373646 +HP:0011304 Broad thumb 0.000000 HP:0009686 Absent epiphyses of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.418605 1.373646 +HP:0011304 Broad thumb 0.000000 HP:0009302 Bullet-shaped distal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0009311 Bullet-shaped proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0009451 Bullet-shaped proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0009431 Bullet-shaped middle phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0009423 Bullet-shaped distal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0009168 Bullet-shaped middle phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0009296 Bullet-shaped middle phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0009241 Bullet-shaped distal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0009228 Bullet-shaped proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.500000 1.358066 +HP:0011304 Broad thumb 0.000000 HP:0010025 Triangular epiphysis of the 1st metacarpal 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.409091 1.357946 +HP:0011304 Broad thumb 0.000000 HP:0009316 Abnormality of the phalanges of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.533333 1.353517 +HP:0011304 Broad thumb 0.000000 HP:0009172 Abnormality of the phalanges of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.533333 1.353517 +HP:0011304 Broad thumb 0.000000 HP:0030368 Hyperphalangy of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.533333 1.353517 +HP:0011304 Broad thumb 0.000000 HP:0006129 Drumstick terminal phalanges 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.533333 1.353517 +HP:0011304 Broad thumb 0.000000 HP:0006170 Chess-pawn distal phalanges 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.533333 1.353517 +HP:0011304 Broad thumb 0.000000 HP:0006193 Thimble-shaped middle phalanges of hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.533333 1.353517 +HP:0011304 Broad thumb 0.000000 HP:0006060 Tombstone-shaped proximal phalanges 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.533333 1.353517 +HP:0011304 Broad thumb 0.000000 HP:0004213 Abnormality of the phalanges of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.533333 1.353517 +HP:0011304 Broad thumb 0.000000 HP:0005924 Abnormality of the epiphyses of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.531250 1.350871 +HP:0011304 Broad thumb 0.000000 HP:0005920 Abnormality of the epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.531250 1.350871 +HP:0011304 Broad thumb 0.000000 HP:0009777 Absent thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.400000 1.342773 +HP:0011304 Broad thumb 0.000000 HP:0009396 Enlarged epiphyses of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009395 Cone-shaped epiphyses of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009392 Triangular epiphyses of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009401 Small epiphyses of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009403 Triangular epiphyses of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009442 Curved phalanges of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009420 Triangular epiphyses of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009418 Small epiphyses of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009413 Enlarged epiphyses of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009412 Cone-shaped epiphyses of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009411 Bracket epiphyses of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009194 Small epiphyses of the metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0009285 Curved phalanges of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0004214 Curved phalanges of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010269 Bracket epiphyses of the proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010270 Cone-shaped epiphyses of the proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010271 Enlarged epiphyses of the proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010276 Small epiphyses of the proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010278 Triangular epiphyses of the proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010259 Cone-shaped epiphyses of the middle phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010258 Bracket epiphyses of the middle phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010260 Enlarged epiphyses of the middle phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010267 Triangular epiphyses of the middle phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010265 Small epiphyses of the middle phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010248 Cone-shaped epiphyses of the distal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010247 Bracket epiphyses of the distal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010249 Enlarged epiphyses of the distal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010254 Small epiphyses of the distal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0010256 Triangular epiphyses of the distal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.486486 1.339588 +HP:0011304 Broad thumb 0.000000 HP:0006108 Tapered metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.483871 1.335983 +HP:0011304 Broad thumb 0.000000 HP:0006166 Tubular metacarpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.483871 1.335983 +HP:0011304 Broad thumb 0.000000 HP:0006042 Y-shaped metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.483871 1.335983 +HP:0011304 Broad thumb 0.000000 HP:0010493 Long metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.483871 1.335983 +HP:0011304 Broad thumb 0.000000 HP:0010707 1-4 finger syndactyly 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.394737 1.333910 +HP:0011304 Broad thumb 0.000000 HP:0009997 Duplication of phalanx of hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.516129 1.331507 +HP:0011304 Broad thumb 0.000000 HP:0006261 Abnormality of phalangeal joints of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.516129 1.331507 +HP:0011304 Broad thumb 0.000000 HP:0006243 Phalangeal dislocation 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.516129 1.331507 +HP:0011304 Broad thumb 0.000000 HP:0006026 Rounded epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.515152 1.330247 +HP:0011304 Broad thumb 0.000000 HP:0009773 Symphalangism affecting the phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.473684 1.321845 +HP:0011304 Broad thumb 0.000000 HP:0009778 Short thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.384615 1.316697 +HP:0011304 Broad thumb 0.000000 HP:0000885 Broad ribs 0.000000 HP:0005622 Broad long bones 6.342901 0.272727 1.315249 +HP:0011304 Broad thumb 0.000000 HP:0006236 Slender metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.468750 1.314942 +HP:0011304 Broad thumb 0.000000 HP:0006145 Central Y-shaped metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.468750 1.314942 +HP:0011304 Broad thumb 0.000000 HP:0010028 Bullet-shaped 1st metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.468750 1.314942 +HP:0011304 Broad thumb 0.000000 HP:0005916 Abnormal metacarpal morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.466667 1.312017 +HP:0011304 Broad thumb 0.000000 HP:0009357 Abnormality of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009358 Abnormality of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009320 Abnormality of the epiphyses of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009174 Abnormality of the epiphyses of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009150 Abnormality of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009152 Abnormality of the epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009283 Abnormality of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009284 Abnormality of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009282 Abnormality of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009771 Osteolytic defects of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0005913 Abnormality of metacarpal epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009998 Complete duplication of phalanx of hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0009999 Partial duplication of the phalanx of hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0004172 Abnormality of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006263 Abnormality of the epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006237 Prominent interphalangeal joints 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006252 Interphalangeal joint erosions 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006253 Swelling of proximal interphalangeal joints 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006213 Thin proximal phalanges with broad epiphyses of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006217 Limited mobility of proximal interphalangeal joint 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006162 Soft tissue swelling of interphalangeal joints 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006175 Proximal phalangeal periosteal thickening 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0006019 Reduced proximal interphalangeal joint space 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0004267 Narrow small joints of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0004269 Subluxation of the small joints of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0004225 Abnormality of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0004219 Abnormality of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0004288 Pseudoepiphyses of hand bones 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010228 Absent epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010229 Bracket epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010231 Enlarged epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010230 Cone-shaped epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010238 Triangular epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010236 Small epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010245 Abnormality of the epiphyses of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010243 Abnormality of the epiphyses of the distal phalanx of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010244 Abnormality of the epiphyses of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0010006 Duplication of the proximal phalanx of hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.500000 1.310538 +HP:0011304 Broad thumb 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.464286 1.308666 +HP:0011304 Broad thumb 0.000000 HP:0009616 Bifid first metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.461538 1.304787 +HP:0011304 Broad thumb 0.000000 HP:0006147 Progressive fusion 2nd-5th pip joints 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.461538 1.304787 +HP:0011304 Broad thumb 0.000000 HP:0006187 Fusion of midphalangeal joints 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.461538 1.304787 +HP:0011304 Broad thumb 0.000000 HP:0006048 Distal widening of metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.461538 1.304787 +HP:0011304 Broad thumb 0.000000 HP:0005726 Thumbs hypoplastic with bulbous tips 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.375000 1.300134 +HP:0011304 Broad thumb 0.000000 HP:0009458 Aplasia of the proximal phalanx of the 3rd finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.354167 1.299207 +HP:0011304 Broad thumb 0.000000 HP:0009438 Absent middle phalanx of 3rd finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.354167 1.299207 +HP:0011304 Broad thumb 0.000000 HP:0009162 Absent middle phalanx of 5th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.354167 1.299207 +HP:0011304 Broad thumb 0.000000 HP:0009298 Aplasia of the proximal phalanx of the 4th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.354167 1.299207 +HP:0011304 Broad thumb 0.000000 HP:0009294 Absent middle phalanx of 4th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.354167 1.299207 +HP:0011304 Broad thumb 0.000000 HP:0009225 Aplasia of the proximal phalanx of the 5th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.354167 1.299207 +HP:0011304 Broad thumb 0.000000 HP:0012307 Spatulate ribs 0.000000 HP:0005622 Broad long bones 6.342901 0.264706 1.295764 +HP:0011304 Broad thumb 0.000000 HP:0010233 Irregular epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.485714 1.291679 +HP:0011304 Broad thumb 0.000000 HP:0010232 Fragmentation of the epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.485714 1.291679 +HP:0011304 Broad thumb 0.000000 HP:0010235 Pseudoepiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.485714 1.291679 +HP:0011304 Broad thumb 0.000000 HP:0200050 Bracket metacarpal epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.485714 1.291679 +HP:0011304 Broad thumb 0.000000 HP:0003871 Deformed humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0003884 Triangular humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0003883 Tapered humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0003864 Bifid humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0011909 Flattened metacarpal heads 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0006232 Expanded metacarpals with widened medullary cavities 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0006119 Proximal tapering of metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0006160 Irregular metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0006012 Widened metacarpal shaft 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0006086 Thin metacarpal cortices 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.451613 1.290682 +HP:0011304 Broad thumb 0.000000 HP:0100899 Sclerosis of finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.484848 1.290527 +HP:0011304 Broad thumb 0.000000 HP:0009883 Duplication of the distal phalanx of hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.484848 1.290527 +HP:0011304 Broad thumb 0.000000 HP:0001161 Hand polydactyly 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.484848 1.290527 +HP:0011304 Broad thumb 0.000000 HP:0011929 Hypersegmentation of proximal phalanx of third finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.484848 1.290527 +HP:0011304 Broad thumb 0.000000 HP:0006247 Enlarged interphalangeal joints 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.484848 1.290527 +HP:0011304 Broad thumb 0.000000 HP:0006167 Prominent proximal interphalangeal joints 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.484848 1.290527 +HP:0011304 Broad thumb 0.000000 HP:0009849 Symphalangism of middle phalanx of finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.450000 1.288375 +HP:0011304 Broad thumb 0.000000 HP:0009857 Symphalangism affecting the proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.450000 1.288375 +HP:0011304 Broad thumb 0.000000 HP:0009429 Aplasia of the distal phalanx of the 3rd finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.346939 1.285881 +HP:0011304 Broad thumb 0.000000 HP:0009291 Aplasia of the distal phalanx of the 4th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.346939 1.285881 +HP:0011304 Broad thumb 0.000000 HP:0009246 Aplasia of the distal phalanx of the 5th finger 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.346939 1.285881 +HP:0011304 Broad thumb 0.000000 HP:0009626 Contractures of the interphalangeal joint of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.361702 1.276874 +HP:0011304 Broad thumb 0.000000 HP:0009171 Triangular epiphyses of the metacarpals 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.472222 1.273613 +HP:0011304 Broad thumb 0.000000 HP:0009196 Absent metacarpal epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.472222 1.273613 +HP:0011304 Broad thumb 0.000000 HP:0006134 Enlarged metacarpal epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.472222 1.273613 +HP:0011304 Broad thumb 0.000000 HP:0006059 Cone-shaped metacarpal epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.472222 1.273613 +HP:0011304 Broad thumb 0.000000 HP:0010226 Abnormality of the epiphysis of the 5th metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.472222 1.273613 +HP:0011304 Broad thumb 0.000000 HP:0010222 Abnormality of the epiphysis of the 3rd metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.472222 1.273613 +HP:0011304 Broad thumb 0.000000 HP:0009452 Curved proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009445 Symphalangism of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009432 Curved middle phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009428 Curved distal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009173 Curved middle phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009288 Curved proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009287 Curved middle phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009286 Curved distal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009229 Curved proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0001204 Distal symphalangism (hands) 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0004197 Symphalangism of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0006152 Proximal symphalangism (hands) 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0004226 Curved distal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0004218 Symphalangism of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.439024 1.272566 +HP:0011304 Broad thumb 0.000000 HP:0009839 Osteolytic defects of the distal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0009847 Osteolytic defects of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0009855 Osteolytic defects of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0009985 Duplication of phalanx of 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0006185 Enlarged proximal interphalangeal joints 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0006064 Limited interphalangeal movement 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0004268 Osteoarthritis of the small joints of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0010441 Ectopic accessory finger-like appendage 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0010000 Complete duplication of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0010003 Partial duplication of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0010008 Duplication of the middle phalanx of hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0012313 Heberden's node 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0012314 Bouchard's node 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.470588 1.271408 +HP:0011304 Broad thumb 0.000000 HP:0003882 Slender humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.437500 1.270355 +HP:0011304 Broad thumb 0.000000 HP:0001223 Pointed proximal second through fifth metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.437500 1.270355 +HP:0011304 Broad thumb 0.000000 HP:0006645 Thin clavicles 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.437500 1.270355 +HP:0011304 Broad thumb 0.000000 HP:0010560 Undulate clavicles 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.437500 1.270355 +HP:0011304 Broad thumb 0.000000 HP:0000890 Long clavicles 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.437500 1.270355 +HP:0011304 Broad thumb 0.000000 HP:0009600 Flexion contracture of thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.357143 1.268801 +HP:0011304 Broad thumb 0.000000 HP:0010708 1-5 finger syndactyly 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.357143 1.268801 +HP:0011304 Broad thumb 0.000000 HP:0200113 Aphalangy of hands and feet 0.000000 HP:0009767 Aplasia/Hypoplasia of the phalanges of the hand 4.765938 0.333333 1.260414 +HP:0011304 Broad thumb 0.000000 HP:0010029 Curved 1st metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.428571 1.257325 +HP:0011304 Broad thumb 0.000000 HP:0009385 Enlarged epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009384 Cone-shaped epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009382 Absent epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009383 Bracket epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009390 Small epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009393 Absent epiphyses of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009394 Bracket epiphyses of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009489 Bracket epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009498 Triangular epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009496 Small epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009490 Cone-shaped epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009491 Enlarged epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009410 Absent epiphyses of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009189 Fragmentation of the metacarpal epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009190 Irregular epiphyses of the metacarpals 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009193 Pseudoepiphyses of the metacarpals 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0006146 Broad metacarpal epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0010227 Pseudoepiphysis of the 5th metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0010223 Pseudoepiphysis of the 3rd metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0010268 Absent epiphyses of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0010257 Absent epiphyses of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0010246 Absent epiphyses of the distal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.459459 1.256284 +HP:0011304 Broad thumb 0.000000 HP:0009443 Osteolytic defects of the phalanges of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0009609 Duplication of the 1st metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0100917 Sclerosis of proximal finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0100916 Sclerosis of middle finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0100915 Sclerosis of distal finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0004195 Osteolytic defects of the phalanges of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0006226 Osteoarthritis of the first carpometacarpal joint 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0006233 Osteoarthritis of the distal interphalangeal joint 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0006163 Enlarged metacarpophalangeal joints 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0006159 Mesoaxial hand polydactyly 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0004230 Subluxation of the proximal interphalangeal joint of the little finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0004216 Osteolytic defects of the phalanges of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0010690 Mirror image hand polydactyly 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0010001 Complete duplication of the distal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0010004 Partial duplication of the distal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.457143 1.253114 +HP:0011304 Broad thumb 0.000000 HP:0009625 Contractures of the metacarpophalangeal joint of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.347826 1.252142 +HP:0011304 Broad thumb 0.000000 HP:0005687 Deformed humeral heads 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.424242 1.250958 +HP:0011304 Broad thumb 0.000000 HP:0040071 Abnormal morphology of ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.424242 1.250958 +HP:0011304 Broad thumb 0.000000 HP:0045009 Abnormal morphology of the radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.424242 1.250958 +HP:0011304 Broad thumb 0.000000 HP:0006014 Abnormally shaped carpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.424242 1.250958 +HP:0011304 Broad thumb 0.000000 HP:0003957 Cortical thickening of the forearm bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.419355 1.243732 +HP:0011304 Broad thumb 0.000000 HP:0003885 Undermodeled humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.419355 1.243732 +HP:0011304 Broad thumb 0.000000 HP:0040073 Abnormal morphology of forearm bone 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.419355 1.243732 +HP:0011304 Broad thumb 0.000000 HP:0000782 Abnormality of the scapula 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.419355 1.243732 +HP:0011304 Broad thumb 0.000000 HP:0009386 Fragmentation of the epiphyses of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0009397 Fragmentation of the epiphyses of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0009492 Fragmentation of the epiphyses of the 2nd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0009414 Fragmentation of the epiphyses of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0010272 Fragmentation of the epiphyses of the proximal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0010261 Fragmentation of the epiphyses of the middle phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0010250 Fragmentation of the epiphyses of the distal phalanges of the hand 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0010016 Bracket epiphysis of the 1st metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0010017 Cone-shaped epiphysis of the 1st metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0010018 Enlarged epiphysis of the 1st metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.418605 1.242620 +HP:0011304 Broad thumb 0.000000 HP:0009389 Pseudoepiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009387 Irregular epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009398 Irregular epiphyses of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009488 Absent epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009495 Pseudoepiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009493 Irregular epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009400 Pseudoepiphyses of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009417 Pseudoepiphyses of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009415 Irregular epiphyses of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0006140 Premature fusion of phalangeal epiphyses 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0010273 Irregular epiphyses of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0010275 Pseudoepiphyses of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0010264 Pseudoepiphyses of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0010262 Irregular epiphyses of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0010251 Irregular epiphyses of the distal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0010253 Pseudoepiphyses of the distal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0010014 Abnormality of the epiphysis of the 1st metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.447368 1.239644 +HP:0011304 Broad thumb 0.000000 HP:0009624 Contractures of the carpometacarpal joint of the thumb 0.000000 HP:0001172 Abnormality of the thumb 4.507598 0.340909 1.239629 +HP:0011304 Broad thumb 0.000000 HP:0001162 Postaxial hand polydactyly 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.444444 1.235586 +HP:0011304 Broad thumb 0.000000 HP:0009986 Complete duplication of the phalanges of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.444444 1.235586 +HP:0011304 Broad thumb 0.000000 HP:0009987 Partial duplication of the phalanges of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.444444 1.235586 +HP:0011304 Broad thumb 0.000000 HP:0100919 Sclerosis of 3rd finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.444444 1.235586 +HP:0011304 Broad thumb 0.000000 HP:0100921 Sclerosis of 5th finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.444444 1.235586 +HP:0011304 Broad thumb 0.000000 HP:0100920 Sclerosis of 4th finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.444444 1.235586 +HP:0011304 Broad thumb 0.000000 HP:0010002 Complete duplication of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.444444 1.235586 +HP:0011304 Broad thumb 0.000000 HP:0010005 Partial duplication of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.444444 1.235586 +HP:0011304 Broad thumb 0.000000 HP:0003990 Pointed ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0003988 Long ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0003989 Notched ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0045008 Abnormal shape of the radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0006424 Elongated radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0006174 Metacarpal diaphyseal endosteal sclerosis 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0006153 Disharmonious carpal bone 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0004237 Large carpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0004235 Comma-shaped carpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.411765 1.232426 +HP:0011304 Broad thumb 0.000000 HP:0009337 Cone-shaped epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009338 Enlarged epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009336 Bracket epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009331 Triangular epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009348 Cone-shaped epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009349 Enlarged epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009347 Bracket epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009345 Triangular epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009343 Small epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009354 Small epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009356 Triangular epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009323 Cone-shaped epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009322 Bracket epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009324 Enlarged epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009329 Small epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009187 Bracket epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009197 Bracket epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009149 Triangular epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009148 Small epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009147 Enlarged epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009154 Triangular epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009155 Cone-shaped epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009158 Enlarged epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009159 Small epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009271 Triangular epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009258 Small epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009253 Enlarged epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009252 Cone-shaped epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009262 Bracket epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009260 Triangular epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009269 Small epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009264 Enlarged epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009263 Cone-shaped epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009213 Triangular epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009215 Bracket epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009211 Small epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009216 Cone-shaped epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009217 Enlarged epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009224 Triangular epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009222 Small epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009206 Enlarged epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0009205 Cone-shaped epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0004222 Cone-shaped epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0010023 Small epiphysis of the 1st metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.409091 1.228417 +HP:0011304 Broad thumb 0.000000 HP:0003969 Slender forearm bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.406250 1.224145 +HP:0011304 Broad thumb 0.000000 HP:0003971 Broad forearm bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.406250 1.224145 +HP:0011304 Broad thumb 0.000000 HP:0003954 Angulated forearm bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.406250 1.224145 +HP:0011304 Broad thumb 0.000000 HP:0003959 Deformed forearm bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.406250 1.224145 +HP:0011304 Broad thumb 0.000000 HP:0006650 Thickening of the lateral border of the scapula 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.406250 1.224145 +HP:0011304 Broad thumb 0.000000 HP:0000912 Sprengel anomaly 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.406250 1.224145 +HP:0011304 Broad thumb 0.000000 HP:0009333 Abnormality of the epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0009334 Abnormality of the epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0009332 Abnormality of the epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0009198 Abnormality of the epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0009191 Ivory epiphyses of the metacarpals 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0009153 Abnormality of the epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0009247 Abnormality of the epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0009248 Abnormality of the epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0009249 Abnormality of the epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0006179 Pseudoepiphyses of second metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0004224 Abnormality of the epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0010234 Ivory epiphyses of the phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.435897 1.223648 +HP:0011304 Broad thumb 0.000000 HP:0005696 Postaxial polydactyly type A 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.432432 1.218775 +HP:0011304 Broad thumb 0.000000 HP:0005676 Rudimentary postaxial polydactyly of hands 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.432432 1.218775 +HP:0011304 Broad thumb 0.000000 HP:0009971 Polydactyly affecting the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.432432 1.218775 +HP:0011304 Broad thumb 0.000000 HP:0009958 Polydactyly affecting the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.432432 1.218775 +HP:0011304 Broad thumb 0.000000 HP:0009946 Polydactyly affecting the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.432432 1.218775 +HP:0011304 Broad thumb 0.000000 HP:0006136 Bilateral postaxial polydactyly 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.432432 1.218775 +HP:0011304 Broad thumb 0.000000 HP:0009308 Symphalangism of middle phalanx of 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0009314 Symphalangism affecting the proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0009455 Symphalangism affecting the proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0009435 Symphalangism of middle phalanx of 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0009178 Symphalangism of middle phalanx of 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0003975 Chevron-shaped/cone-shaped radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0003976 Constricted radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0003977 Deformed radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0003865 Bowed humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0009232 Symphalangism affecting the proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0006433 Dysplastic radii 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0004242 Broad carpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.400000 1.214692 +HP:0011304 Broad thumb 0.000000 HP:0010049 Short metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.394737 1.206674 +HP:0011304 Broad thumb 0.000000 HP:0003961 Fractured forearm bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.393939 1.205454 +HP:0011304 Broad thumb 0.000000 HP:0011912 Abnormality of the glenoid fossa 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.393939 1.205454 +HP:0011304 Broad thumb 0.000000 HP:0009772 Patchy sclerosis of finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.421053 1.202632 +HP:0011304 Broad thumb 0.000000 HP:0009990 Duplication of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.421053 1.202632 +HP:0011304 Broad thumb 0.000000 HP:0009988 Duplication of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.421053 1.202632 +HP:0011304 Broad thumb 0.000000 HP:0100914 Sclerosis of the 1st metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.421053 1.202632 +HP:0011304 Broad thumb 0.000000 HP:0010031 Patchy sclerosis of the 1st metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.421053 1.202632 +HP:0011304 Broad thumb 0.000000 HP:0003992 Slender ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.388889 1.197702 +HP:0011304 Broad thumb 0.000000 HP:0003870 Crumpled humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.388889 1.197702 +HP:0011304 Broad thumb 0.000000 HP:0005914 Aplasia/Hypoplasia involving the metacarpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.388889 1.197702 +HP:0011304 Broad thumb 0.000000 HP:0006420 Asymmetric radial dysplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.388889 1.197702 +HP:0011304 Broad thumb 0.000000 HP:0004263 Large capitate bone 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.388889 1.197702 +HP:0011304 Broad thumb 0.000000 HP:0004260 Large hamate bone 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.388889 1.197702 +HP:0011304 Broad thumb 0.000000 HP:0004245 Comma-shaped scaphoid 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.388889 1.197702 +HP:0011304 Broad thumb 0.000000 HP:0004236 Irregular carpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.388889 1.197702 +HP:0011304 Broad thumb 0.000000 HP:0010237 Epiphyseal stippling of finger phalanges 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.414634 1.193430 +HP:0011304 Broad thumb 0.000000 HP:0009701 Metacarpal synostosis 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.384615 1.191102 +HP:0011304 Broad thumb 0.000000 HP:0005720 Shortening of all metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.384615 1.191102 +HP:0011304 Broad thumb 0.000000 HP:0006161 Short metacarpals with rounded proximal ends 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.384615 1.191102 +HP:0011304 Broad thumb 0.000000 HP:0006011 Cuboidal metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.384615 1.191102 +HP:0011304 Broad thumb 0.000000 HP:0009251 Bracket epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.382979 1.188567 +HP:0011304 Broad thumb 0.000000 HP:0006035 Cone-shaped epiphyses of phalanges 2 to 5 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.382979 1.188567 +HP:0011304 Broad thumb 0.000000 HP:0004033 Curved olecranon 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.382353 1.187595 +HP:0011304 Broad thumb 0.000000 HP:0006633 Glenoid fossa hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.382353 1.187595 +HP:0011304 Broad thumb 0.000000 HP:0006591 Absent glenoid fossa 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.382353 1.187595 +HP:0011304 Broad thumb 0.000000 HP:0000911 Flat glenoid fossa 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.382353 1.187595 +HP:0011304 Broad thumb 0.000000 HP:0009303 Osteolytic defects of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009312 Osteolytic defects of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009453 Osteolytic defects of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009433 Osteolytic defects of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009424 Osteolytic defects of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009170 Osteolytic defects of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009297 Osteolytic defects of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009230 Osteolytic defects of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009242 Osteolytic defects of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0005769 Fifth finger distal phalanx clinodactyly 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009615 Complete duplication of the first metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009989 Duplication of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009972 Duplication of phalanx of 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0009959 Duplication of phalanx of 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100907 Sclerosis of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100906 Sclerosis of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100909 Sclerosis of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100903 Sclerosis of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100902 Sclerosis of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100905 Sclerosis of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100901 Sclerosis of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100911 Sclerosis of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0100910 Sclerosis of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.410256 1.187113 +HP:0011304 Broad thumb 0.000000 HP:0003956 Bowed forearm bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.378378 1.181405 +HP:0011304 Broad thumb 0.000000 HP:0009700 Synostosis involving bones of the fingers 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.378378 1.181405 +HP:0011304 Broad thumb 0.000000 HP:0005792 Short humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.378378 1.181405 +HP:0011304 Broad thumb 0.000000 HP:0040062 Slender radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.378378 1.181405 +HP:0011304 Broad thumb 0.000000 HP:0010048 Aplasia of metacarpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.378378 1.181405 +HP:0011304 Broad thumb 0.000000 HP:0000894 Short clavicles 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.378378 1.181405 +HP:0011304 Broad thumb 0.000000 HP:0006040 Long second metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.375000 1.176120 +HP:0011304 Broad thumb 0.000000 HP:0001167 Abnormality of finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.500000 1.171647 +HP:0011304 Broad thumb 0.000000 HP:0001474 Sclerotic scapulae 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.371429 1.170507 +HP:0011304 Broad thumb 0.000000 HP:0006713 Aplasia/Hypoplasia of the scapulae 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.371429 1.170507 +HP:0011304 Broad thumb 0.000000 HP:0003906 Broad humeral epiphyseal plate 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.368421 1.165757 +HP:0011304 Broad thumb 0.000000 HP:0006608 Midclavicular hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.368421 1.165757 +HP:0011304 Broad thumb 0.000000 HP:0004261 Wide hamate bone 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.368421 1.165757 +HP:0011304 Broad thumb 0.000000 HP:0010036 Aplasia/Hypoplasia of the 2nd metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.368421 1.165757 +HP:0011304 Broad thumb 0.000000 HP:0010039 Aplasia/Hypoplasia of the 3rd metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.368421 1.165757 +HP:0011304 Broad thumb 0.000000 HP:0010042 Aplasia/Hypoplasia of the 4th metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.368421 1.165757 +HP:0011304 Broad thumb 0.000000 HP:0010045 Aplasia/Hypoplasia of the 5th metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.368421 1.165757 +HP:0011304 Broad thumb 0.000000 HP:0009195 Epiphyseal stippling of the metacarpals 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.395349 1.165346 +HP:0011304 Broad thumb 0.000000 HP:0010274 Ivory epiphyses of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.395349 1.165346 +HP:0011304 Broad thumb 0.000000 HP:0010263 Ivory epiphyses of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.395349 1.165346 +HP:0011304 Broad thumb 0.000000 HP:0010252 Ivory epiphyses of the distal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.395349 1.165346 +HP:0011304 Broad thumb 0.000000 HP:0010015 Absent epiphysis of the 1st metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.395349 1.165346 +HP:0011304 Broad thumb 0.000000 HP:0009204 Bracket epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.367347 1.164057 +HP:0011304 Broad thumb 0.000000 HP:0010019 Fragmentation of the epiphysis of the 1st metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.367347 1.164057 +HP:0011304 Broad thumb 0.000000 HP:0009703 Synostosis involving the 1st metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0009706 Synostosis involving the 3rd metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0009707 Synostosis involving the 4th metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0009705 Synostosis involving the 2nd metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0009708 Synostosis involving the 5th metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0010038 Short 2nd metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0010044 Short 4th metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0010041 Short 3rd metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0010047 Short 5th metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.365854 1.161689 +HP:0011304 Broad thumb 0.000000 HP:0009848 Patchy sclerosis of middle phalanx of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.390244 1.157797 +HP:0011304 Broad thumb 0.000000 HP:0009840 Patchy sclerosis of distal phalanx of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.390244 1.157797 +HP:0011304 Broad thumb 0.000000 HP:0009856 Patchy sclerosis of proximal phalanx of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.390244 1.157797 +HP:0011304 Broad thumb 0.000000 HP:0009973 Complete duplication of the phalanges of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.390244 1.157797 +HP:0011304 Broad thumb 0.000000 HP:0009974 Partial duplication of the phalanges of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.390244 1.157797 +HP:0011304 Broad thumb 0.000000 HP:0009961 Partial duplication of the phalanges of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.390244 1.157797 +HP:0011304 Broad thumb 0.000000 HP:0009960 Complete duplication of the phalanges of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.390244 1.157797 +HP:0011304 Broad thumb 0.000000 HP:0003691 Scapular winging 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.361111 1.154134 +HP:0011304 Broad thumb 0.000000 HP:0010317 Scapular aplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.361111 1.154134 +HP:0011304 Broad thumb 0.000000 HP:0000882 Hypoplastic scapulae 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.361111 1.154134 +HP:0011304 Broad thumb 0.000000 HP:0000918 Scapular exostoses 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.361111 1.154134 +HP:0011304 Broad thumb 0.000000 HP:0009339 Fragmentation of the epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009350 Fragmentation of the epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009305 Distal/middle symphalangism of 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009325 Fragmentation of the epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009426 Distal/middle symphalangism of 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009166 Fragmentation of the epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009254 Fragmentation of the epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009265 Fragmentation of the epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009244 Distal/middle symphalangism of 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009218 Fragmentation of the epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009207 Fragmentation of the epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009202 Fragmentation of the epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.360000 1.152358 +HP:0011304 Broad thumb 0.000000 HP:0009335 Absent epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009346 Absent epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009388 Ivory epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009399 Ivory epiphyses of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009391 Stippling of the epiphyses of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009321 Absent epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009497 Stippling of the epiphyses of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009402 Stippling of the epiphyses of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009416 Ivory epiphyses of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009419 Stippling of the epiphyses of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009160 Absent epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009250 Absent epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009261 Absent epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009214 Absent epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0009203 Absent epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0003696 Absent epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0010277 Stippling of the epiphyses of the proximal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0010266 Stippling of the epiphyses of the middle phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0010255 Stippling of the epiphyses of the distal phalanges of the hand 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0010020 Irregular epiphysis of the 1st metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0010022 Pseudoepiphysis of the 1st metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.386364 1.152027 +HP:0011304 Broad thumb 0.000000 HP:0030029 Splayed fingers 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0009710 Chilblain lesions 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0001211 Abnormality of the fingertips 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0001238 Slender finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0004060 Trident hand 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0004150 Abnormality of the 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0004100 Abnormality of the 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0004188 Abnormality of the 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0006143 Abnormal finger flexion creases 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0006150 Swan neck-like deformities of the fingers 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0004207 Abnormality of the 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.482759 1.151269 +HP:0011304 Broad thumb 0.000000 HP:0009702 Carpal synostosis 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.358974 1.150714 +HP:0011304 Broad thumb 0.000000 HP:0001498 Carpal bone hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.358974 1.150714 +HP:0011304 Broad thumb 0.000000 HP:0005891 Progressive forearm bowing 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.358974 1.150714 +HP:0011304 Broad thumb 0.000000 HP:0006028 Metaphyseal cupping of metacarpals 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.437500 1.149165 +HP:0011304 Broad thumb 0.000000 HP:0005867 Fused fourth and fifth metacarpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.357143 1.147776 +HP:0011304 Broad thumb 0.000000 HP:0009377 Patchy sclerosis of 5th finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.380952 1.143930 +HP:0011304 Broad thumb 0.000000 HP:0009406 Patchy sclerosis of 4th finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.380952 1.143930 +HP:0011304 Broad thumb 0.000000 HP:0009444 Patchy sclerosis of 3rd finger phalanx 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.380952 1.143930 +HP:0011304 Broad thumb 0.000000 HP:0009993 Complete duplication of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.380952 1.143930 +HP:0011304 Broad thumb 0.000000 HP:0009994 Partial duplication of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.380952 1.143930 +HP:0011304 Broad thumb 0.000000 HP:0009996 Partial duplication of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.380952 1.143930 +HP:0011304 Broad thumb 0.000000 HP:0009991 Complete duplication of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.380952 1.143930 +HP:0011304 Broad thumb 0.000000 HP:0009342 Pseudoepiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009340 Irregular epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009351 Irregular epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009353 Pseudoepiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009326 Irregular epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009328 Pseudoepiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009188 Pseudoepiphysis of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009199 Irregular epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009167 Irregular epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009257 Pseudoepiphysis of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009255 Irregular epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009268 Pseudoepiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009266 Irregular epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009210 Pseudoepiphysis of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009219 Irregular epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009221 Pseudoepiphysis of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009208 Irregular epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0009200 Pseudoepiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.377778 1.139155 +HP:0011304 Broad thumb 0.000000 HP:0006631 Hypoplastic distal segments of scapulae 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.351351 1.138431 +HP:0011304 Broad thumb 0.000000 HP:0006584 Small abnormally formed scapulae 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.351351 1.138431 +HP:0011304 Broad thumb 0.000000 HP:0003978 Fractured radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0003987 Fractured ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0009821 Forearm undergrowth 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0005694 Partial fusion of proximal row of carpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0003031 Ulnar bowing 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0006207 Partial fusion of carpals 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0010037 Aplasia of the 2nd metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0010043 Aplasia of the 4th metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0010046 Aplasia of the 5th metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0010040 Aplasia of the 3rd metacarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0005048 Synostosis of carpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.350000 1.136240 +HP:0011304 Broad thumb 0.000000 HP:0100807 Long fingers 0.000000 HP:0001167 Abnormality of finger 2.745511 0.466667 1.131918 +HP:0011304 Broad thumb 0.000000 HP:0100746 Macrodactyly of finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.466667 1.131918 +HP:0011304 Broad thumb 0.000000 HP:0001166 Arachnodactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.466667 1.131918 +HP:0011304 Broad thumb 0.000000 HP:0001049 Absent dorsal skin creases over affected joints 0.000000 HP:0001167 Abnormality of finger 2.745511 0.466667 1.131918 +HP:0011304 Broad thumb 0.000000 HP:0011300 Broad fingertip 0.000000 HP:0001167 Abnormality of finger 2.745511 0.466667 1.131918 +HP:0011304 Broad thumb 0.000000 HP:0004097 Deviation of finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.466667 1.131918 +HP:0011304 Broad thumb 0.000000 HP:0004095 Curved fingers 0.000000 HP:0001167 Abnormality of finger 2.745511 0.466667 1.131918 +HP:0011304 Broad thumb 0.000000 HP:0006109 Absent phalangeal crease 0.000000 HP:0001167 Abnormality of finger 2.745511 0.466667 1.131918 +HP:0011304 Broad thumb 0.000000 HP:0009995 Partial duplication of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.372093 1.130551 +HP:0011304 Broad thumb 0.000000 HP:0009992 Complete duplication of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.372093 1.130551 +HP:0011304 Broad thumb 0.000000 HP:0009975 Duplication of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.372093 1.130551 +HP:0011304 Broad thumb 0.000000 HP:0009977 Duplication of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.372093 1.130551 +HP:0011304 Broad thumb 0.000000 HP:0009962 Duplication of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.372093 1.130551 +HP:0011304 Broad thumb 0.000000 HP:0009964 Duplication of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.372093 1.130551 +HP:0011304 Broad thumb 0.000000 HP:0009477 Proximal/middle symphalangism of 4th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.346154 1.129980 +HP:0011304 Broad thumb 0.000000 HP:0009482 Proximal/middle symphalangism of 3rd finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.346154 1.129980 +HP:0011304 Broad thumb 0.000000 HP:0009177 Proximal/middle symphalangism of 5th finger 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.346154 1.129980 +HP:0011304 Broad thumb 0.000000 HP:0005923 Abnormalities of the metaphyses of the hand 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.419355 1.125083 +HP:0011304 Broad thumb 0.000000 HP:0005773 Short forearm 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.341463 1.122297 +HP:0011304 Broad thumb 0.000000 HP:0004247 Small scaphoid 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.341463 1.122297 +HP:0011304 Broad thumb 0.000000 HP:0004258 Small trapezoid bone 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.341463 1.122297 +HP:0011304 Broad thumb 0.000000 HP:0004255 Small trapezium 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.341463 1.122297 +HP:0011304 Broad thumb 0.000000 HP:0002986 Radial bowing 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.341463 1.122297 +HP:0011304 Broad thumb 0.000000 HP:0005880 Metacarpophalangeal synostosis 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.340909 1.121386 +HP:0011304 Broad thumb 0.000000 HP:0100328 Carpometacarpal synostosis 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.340909 1.121386 +HP:0011304 Broad thumb 0.000000 HP:0009976 Duplication of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.363636 1.117630 +HP:0011304 Broad thumb 0.000000 HP:0009963 Duplication of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.363636 1.117630 +HP:0011304 Broad thumb 0.000000 HP:0100759 Clubbing of fingers 0.000000 HP:0001167 Abnormality of finger 2.745511 0.451613 1.113512 +HP:0011304 Broad thumb 0.000000 HP:0001182 Tapered finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.451613 1.113512 +HP:0011304 Broad thumb 0.000000 HP:0001032 Absent distal interphalangeal creases 0.000000 HP:0001167 Abnormality of finger 2.745511 0.451613 1.113512 +HP:0011304 Broad thumb 0.000000 HP:0006216 Single interphalangeal crease of fifth finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.451613 1.113512 +HP:0011304 Broad thumb 0.000000 HP:0006077 Absent proximal finger flexion creases 0.000000 HP:0001167 Abnormality of finger 2.745511 0.451613 1.113512 +HP:0011304 Broad thumb 0.000000 HP:0001241 Capitate-hamate fusion 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.333333 1.108856 +HP:0011304 Broad thumb 0.000000 HP:0005925 Abnormalities of the diaphyses of the hand 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.406250 1.107363 +HP:0011304 Broad thumb 0.000000 HP:0004273 Cupped metaphyses of hand bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.406250 1.107363 +HP:0011304 Broad thumb 0.000000 HP:0010220 Abnormality of the epiphysis of the 2nd metacarpal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.406250 1.107363 +HP:0011304 Broad thumb 0.000000 HP:0010224 Abnormality of the epiphysis of the 4th metacarpal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.406250 1.107363 +HP:0011304 Broad thumb 0.000000 HP:0100490 Camptodactyly of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.355556 1.105143 +HP:0011304 Broad thumb 0.000000 HP:0001220 Interphalangeal joint contracture of finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.355556 1.105143 +HP:0011304 Broad thumb 0.000000 HP:0009809 Abnormality of upper limb metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.400000 1.098812 +HP:0011304 Broad thumb 0.000000 HP:0009478 Symphalangism of the proximal phalanx of the 4th finger with the 4th metatcarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.327273 1.098730 +HP:0011304 Broad thumb 0.000000 HP:0009483 Symphalangism of the proximal phalanx of the 3rd finger with the 3rd metatcarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.327273 1.098730 +HP:0011304 Broad thumb 0.000000 HP:0009234 Symphalangism of the proximal phalanx of the 5th finger with the 5th metatcarpal 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.327273 1.098730 +HP:0011304 Broad thumb 0.000000 HP:0009317 Deviation of the 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0009468 Deviation of the 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0009465 Ulnar deviation of finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0009466 Radial deviation of finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0009179 Deviation of the 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0009273 Deviation of the 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0005780 Absent fourth finger distal interphalangeal crease 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0001187 Hyperextensibility of the finger joints 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0001233 2-3 finger syndactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0040019 Finger clinodactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0006097 3-4 finger syndactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0010705 4-5 finger syndactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0010557 Overlapping fingers 0.000000 HP:0001167 Abnormality of finger 2.745511 0.437500 1.095975 +HP:0011304 Broad thumb 0.000000 HP:0005617 Bilateral camptodactyly 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.347826 1.093064 +HP:0011304 Broad thumb 0.000000 HP:0009697 Contracture of the distal interphalangeal joints of the fingers 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.347826 1.093064 +HP:0011304 Broad thumb 0.000000 HP:0001215 Camptodactyly of 2nd-5th fingers 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.347826 1.093064 +HP:0011304 Broad thumb 0.000000 HP:0010021 Ivory epiphysis of the 1st metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.346939 1.091669 +HP:0011304 Broad thumb 0.000000 HP:0003907 Abnormality of the humeral metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.393939 1.090456 +HP:0011304 Broad thumb 0.000000 HP:0010225 Pseudoepiphysis of the 4th metacarpal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.393939 1.090456 +HP:0011304 Broad thumb 0.000000 HP:0010221 Pseudoepiphysis of the 2nd metacarpal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.393939 1.090456 +HP:0011304 Broad thumb 0.000000 HP:0004293 Synostosis of second metacarpal-trapezoid 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.319149 1.085008 +HP:0011304 Broad thumb 0.000000 HP:0006595 Scapulohumeral synostosis 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.317073 1.081473 +HP:0011304 Broad thumb 0.000000 HP:0005879 Congenital finger flexion contractures 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0009980 Complete duplication of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0009981 Partial duplication of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0009983 Partial duplication of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0009978 Complete duplication of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0009970 Partial duplication of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0009968 Partial duplication of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0009965 Complete duplication of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0009967 Complete duplication of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340426 1.081374 +HP:0011304 Broad thumb 0.000000 HP:0003839 Abnormality of upper limb epiphysis morphology 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.387097 1.080945 +HP:0011304 Broad thumb 0.000000 HP:0003851 Lytic defects in metaphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.387097 1.080945 +HP:0011304 Broad thumb 0.000000 HP:0003852 Normal density transverse bands in metaphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.387097 1.080945 +HP:0011304 Broad thumb 0.000000 HP:0003854 Sclerosis of metaphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.387097 1.080945 +HP:0011304 Broad thumb 0.000000 HP:0009808 Anomaly of the upper limb diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.387097 1.080945 +HP:0011304 Broad thumb 0.000000 HP:0010024 Epiphyseal stippling of the first metacarpal 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.340000 1.080697 +HP:0011304 Broad thumb 0.000000 HP:0005190 Proximal finger joint hyperextensibility 0.000000 HP:0001167 Abnormality of finger 2.745511 0.424242 1.079241 +HP:0011304 Broad thumb 0.000000 HP:0003922 Spurred humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003923 Square humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003924 Stippled calcification of humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003926 Abnormality of the humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003909 Cortical subperiosteal resorption (humeral metaphyses) 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003917 Pointed humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003918 Sclerotic humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003912 Frayed humeral metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003920 Sloping humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003891 Abnormality of the humeral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0004015 Abnormality of radial metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0004039 Abnormality of ulnar metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.382353 1.074300 +HP:0011304 Broad thumb 0.000000 HP:0003022 Hypoplasia of the ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.311111 1.071257 +HP:0011304 Broad thumb 0.000000 HP:0006370 Distal ulnar epiphyseal stippling 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.311111 1.071257 +HP:0011304 Broad thumb 0.000000 HP:0002984 Hypoplasia of the radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.311111 1.071257 +HP:0011304 Broad thumb 0.000000 HP:0009330 Stippling of the epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009344 Stippling of the epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009341 Ivory epiphysis of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009352 Ivory epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009355 Stippling of the epiphysis of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009304 Patchy sclerosis of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009307 Patchy sclerosis of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009327 Ivory epiphysis of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009313 Patchy sclerosis of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009471 Contracture of the proximal interphalangeal joint of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009454 Patchy sclerosis of the proximal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009434 Patchy sclerosis of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009425 Patchy sclerosis of the distal phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009175 Patchy sclerosis of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009185 Contracture of the proximal interphalangeal joint of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009157 Ivory epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009165 Stippling of the epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009276 Contracture of the proximal interphalangeal joint of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009256 Ivory epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009231 Patchy sclerosis of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009243 Patchy sclerosis of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009212 Stippling of the epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009220 Ivory epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009209 Ivory epiphysis of the middle phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009201 Stippling of the epiphysis of the proximal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009540 Contracture of the proximal interphalangeal joint of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009982 Partial duplication of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009979 Complete duplication of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009969 Partial duplication of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0009966 Complete duplication of the middle phalanx of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0004223 Ivory epiphysis of the distal phalanx of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.333333 1.070049 +HP:0011304 Broad thumb 0.000000 HP:0000944 Abnormality of the metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.379310 1.070017 +HP:0011304 Broad thumb 0.000000 HP:0003843 Round epiphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.375000 1.063920 +HP:0011304 Broad thumb 0.000000 HP:0003848 Cupped metaphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.375000 1.063920 +HP:0011304 Broad thumb 0.000000 HP:0003850 Upper-limb metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.375000 1.063920 +HP:0011304 Broad thumb 0.000000 HP:0003853 Sclerosis with transverse striations in metaphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.375000 1.063920 +HP:0011304 Broad thumb 0.000000 HP:0003855 Spurred metaphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.375000 1.063920 +HP:0011304 Broad thumb 0.000000 HP:0003859 Cortical diaphyseal thickening of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.375000 1.063920 +HP:0011304 Broad thumb 0.000000 HP:0003858 Cortical diaphyseal irregularity of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.375000 1.063920 +HP:0011304 Broad thumb 0.000000 HP:0003861 Broad diaphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.375000 1.063920 +HP:0011304 Broad thumb 0.000000 HP:0001212 Prominent fingertip pads 0.000000 HP:0001167 Abnormality of finger 2.745511 0.411765 1.063252 +HP:0011304 Broad thumb 0.000000 HP:0006265 Aplasia/Hypoplasia of fingers 0.000000 HP:0001167 Abnormality of finger 2.745511 0.411765 1.063252 +HP:0011304 Broad thumb 0.000000 HP:0010511 Long toe 0.000000 HP:0001167 Abnormality of finger 2.745511 0.411765 1.063252 +HP:0011304 Broad thumb 0.000000 HP:0009267 Ivory epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.326923 1.059710 +HP:0011304 Broad thumb 0.000000 HP:0005648 Bilateral ulnar hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.304348 1.059549 +HP:0011304 Broad thumb 0.000000 HP:0006434 Hypoplasia of proximal radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.304348 1.059549 +HP:0011304 Broad thumb 0.000000 HP:0005036 Unilateral ulnar hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.304348 1.059549 +HP:0011304 Broad thumb 0.000000 HP:0005033 Distal ulnar hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 3.688689 0.304348 1.059549 +HP:0011304 Broad thumb 0.000000 HP:0009469 Contracture of the distal interphalangeal joint of the 3rd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.326531 1.059075 +HP:0011304 Broad thumb 0.000000 HP:0009184 Contracture of the distal interphalangeal joint of the 5th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.326531 1.059075 +HP:0011304 Broad thumb 0.000000 HP:0009275 Contracture of the distal interphalangeal joint of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.326531 1.059075 +HP:0011304 Broad thumb 0.000000 HP:0009538 Contracture of the distal interphalangeal joint of the 2nd finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.326531 1.059075 +HP:0011304 Broad thumb 0.000000 HP:0003999 Abnormality of radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003929 Ground glass opacity of humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003930 Lytic defects of humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003932 Sclerotic foci of humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003934 Slender humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003901 Stippled calcification of the humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003908 Corner spurs (humeral metaphyses) 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003910 Enlarged humeral metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003915 Lytic defects of the humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003916 Normal-density transverse bands (humerus) 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003919 Sclerotic humeral metaphysis with longitudinal striations 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0003921 Laterally sloping humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0004023 Sloping radial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0004025 Spurred radial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0004027 Abnormality of radial diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0004037 Abnormality of the ulnar epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0004044 Pointed ulnar metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0004045 Sloping ulnar metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0004040 Corner fragments of ulnar metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0004041 Cupped ulnar metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0010598 Abnormality of the proximal humeral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.371429 1.058843 +HP:0011304 Broad thumb 0.000000 HP:0005868 Metaphyseal enchondromatosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0005899 Metaphyseal dysostosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0003051 Enlarged metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0003021 Metaphyseal cupping 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0003025 Metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0003562 Abnormal metaphyseal vascular invasion 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0100959 Dense metaphyseal bands 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0006505 Abnormality of limb epiphysis morphology 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0006504 Anomaly of the limb diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0004980 Metaphyseal rarefaction 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0004979 Metaphyseal sclerosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0002810 Dumbbell-shaped metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0005089 Abnormal metaphyseal trabeculation 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0005054 Metaphyseal spurs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.366667 1.052033 +HP:0011304 Broad thumb 0.000000 HP:0009380 Aplasia of the fingers 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0009467 Radial deviation of the 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0009463 Ulnar deviation of the 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0009464 Ulnar deviation of the 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0009462 Radial deviation of the 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0009180 Ulnar deviation of the 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0030033 Small finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0009279 Radial deviation of the 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0009278 Ulnar deviation of the 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0040024 Clinodactyly of the 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0040025 Clinodactyly of the 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0040020 Radial deviation of the 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0040022 Clinodactyly of the 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0006165 Proportionate shortening of all digits 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0004209 Clinodactyly of the 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0010709 2-4 finger syndactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0010710 3-5 finger syndactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.400000 1.047952 +HP:0011304 Broad thumb 0.000000 HP:0003904 Wide epiphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.363636 1.047676 +HP:0011304 Broad thumb 0.000000 HP:0003844 Small epiphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.363636 1.047676 +HP:0011304 Broad thumb 0.000000 HP:0003841 Fragmented epiphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.363636 1.047676 +HP:0011304 Broad thumb 0.000000 HP:0003842 Irregular epiphyses of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.363636 1.047676 +HP:0011304 Broad thumb 0.000000 HP:0003846 Wide epiphyseal plates of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.363636 1.047676 +HP:0011304 Broad thumb 0.000000 HP:0003856 Upper limb metaphyseal widening 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.363636 1.047676 +HP:0011304 Broad thumb 0.000000 HP:0006488 Bowing of the arm 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.363636 1.047676 +HP:0011304 Broad thumb 0.000000 HP:0003998 Constricted radial neck 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0003928 Cortical thickening of humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0003935 Wide humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0003905 Abnormality of the humeral epiphyseal plate 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0003913 Humeral metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0003895 Flattened humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0003899 Round humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0003898 Large humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0005825 Mixed sclerosis of humeral metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004001 Medially deficient radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004007 Sclerotic radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004006 Round radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004008 Sloping radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004012 Premature fusion of the radial epiphyseal plates 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004021 Lytic defects of radial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004022 Sclerotic radial metaphysis with longitudinal striations 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004024 Medially sloping radial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004029 Lytic defects of radial diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004028 Spurs of radial diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004031 Broad radial diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004038 Bony spikule of ulnar epiphyseal plate 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0004035 Abnormality of the styloid process of ulna 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0010600 Abnormality of the distal ulnar epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0010597 Abnormality of the distal radial epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.361111 1.044032 +HP:0011304 Broad thumb 0.000000 HP:0030291 Lower-limb metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0030297 Metaphyseal chondromatosis of ulna 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0030296 Metaphyseal chondromatosis of radius 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0030298 Metaphyseal chondromatosis of humerus 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0030295 Metaphyseal chondromatosis of femur 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0030294 Metaphyseal chondromatosis of tibia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0100255 Metaphyseal dysplasia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0003332 Absent primary metaphyseal spongiosa 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0011860 Metaphyseal dappling 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0003016 Metaphyseal widening 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0006470 Thin long bone diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0006490 Abnormality of lower-limb metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0006487 Bowing of the long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0006371 Broad long bone diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0012699 Anomaly of lower limb diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0005042 Irregular, rachitic-like metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0005019 Diaphyseal thickening 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0005092 Streaky metaphyseal sclerosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0000941 Short diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.354839 1.034926 +HP:0011304 Broad thumb 0.000000 HP:0009318 Aplasia/Hypoplasia of the 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.388889 1.033295 +HP:0011304 Broad thumb 0.000000 HP:0001847 Long hallux 0.000000 HP:0001167 Abnormality of finger 2.745511 0.388889 1.033295 +HP:0011304 Broad thumb 0.000000 HP:0009272 Aplasia/Hypoplasia of the 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.388889 1.033295 +HP:0011304 Broad thumb 0.000000 HP:0006264 Aplasia/Hypoplasia of the 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.388889 1.033295 +HP:0011304 Broad thumb 0.000000 HP:0006262 Aplasia/Hypoplasia of the 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.388889 1.033295 +HP:0011304 Broad thumb 0.000000 HP:0003949 Abnormality of the elbow metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.352941 1.032154 +HP:0011304 Broad thumb 0.000000 HP:0009813 Upper limb phocomelia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.352941 1.032154 +HP:0011304 Broad thumb 0.000000 HP:0003900 Small humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0003896 Irregular humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004000 Chevron-shaped/cone-shaped radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004009 Medially sloping radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004002 Flattened radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004005 Large radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004004 Irregular radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004010 Small radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004019 Radial metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004016 Cupped radial metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004014 Broad radial epiphyseal plate 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004013 Medially fused radial epiphyseal plates 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004036 Long styloid process of ulna 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004046 Spurred ulnar metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004042 Ulnar metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004043 Lytic defects of ulnar metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0008838 Stippled calcification proximal humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0004981 Prominent styloid process of ulna 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0005068 Absent styloid process of ulna 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0005043 Proximal humeral metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.351351 1.029827 +HP:0011304 Broad thumb 0.000000 HP:0009270 Stippling of the epiphysis of the proximal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.303571 1.021162 +HP:0011304 Broad thumb 0.000000 HP:0009259 Stippling of the epiphysis of the distal phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.303571 1.021162 +HP:0011304 Broad thumb 0.000000 HP:0009223 Stippling of the epiphysis of the middle phalanx of the 4th finger 0.000000 HP:0005918 Abnormality of phalanx of finger 3.435017 0.303571 1.021162 +HP:0011304 Broad thumb 0.000000 HP:0009381 Short finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.378378 1.019235 +HP:0011304 Broad thumb 0.000000 HP:0001180 Oligodactyly (hands) 0.000000 HP:0001167 Abnormality of finger 2.745511 0.378378 1.019235 +HP:0011304 Broad thumb 0.000000 HP:0006209 Partial-complete absence of 5th phalanges 0.000000 HP:0001167 Abnormality of finger 2.745511 0.378378 1.019235 +HP:0011304 Broad thumb 0.000000 HP:0005871 Metaphyseal chondrodysplasia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0030293 Fibular metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0030292 Tibial metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0003015 Flared metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0006500 Abnormality of lower limb epiphysis morphology 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0006473 Anterior bowing of long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0006383 Progressive bowing of long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0005028 Widened proximal tibial metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0000947 Dumbbell-shaped long bone 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.343750 1.018626 +HP:0011304 Broad thumb 0.000000 HP:0003946 Abnormality of the epiphyses of the elbow 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342857 1.017302 +HP:0011304 Broad thumb 0.000000 HP:0003881 Humeral sclerosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342857 1.017302 +HP:0011304 Broad thumb 0.000000 HP:0003849 Flared upper limb metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342857 1.017302 +HP:0011304 Broad thumb 0.000000 HP:0010175 Bullet-shaped toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342857 1.017302 +HP:0011304 Broad thumb 0.000000 HP:0010180 Triangular shaped phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342857 1.017302 +HP:0011304 Broad thumb 0.000000 HP:0003931 Periosteal new bone (humeral diaphysis) 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342105 1.016186 +HP:0011304 Broad thumb 0.000000 HP:0003903 Broad humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342105 1.016186 +HP:0011304 Broad thumb 0.000000 HP:0004003 Medially flattened radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342105 1.016186 +HP:0011304 Broad thumb 0.000000 HP:0004047 Wide ulnar metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.342105 1.016186 +HP:0011304 Broad thumb 0.000000 HP:0009460 Aplasia of the 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.368421 1.005736 +HP:0011304 Broad thumb 0.000000 HP:0009281 Aplasia of the 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.368421 1.005736 +HP:0011304 Broad thumb 0.000000 HP:0009238 Aplasia of the 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.368421 1.005736 +HP:0011304 Broad thumb 0.000000 HP:0009535 Aplasia of the 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.368421 1.005736 +HP:0011304 Broad thumb 0.000000 HP:0004058 Monodactyly (hands) 0.000000 HP:0001167 Abnormality of finger 2.745511 0.368421 1.005736 +HP:0011304 Broad thumb 0.000000 HP:0006230 Unilateral oligodactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.368421 1.005736 +HP:0011304 Broad thumb 0.000000 HP:0006210 Postaxial oligodactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.368421 1.005736 +HP:0011304 Broad thumb 0.000000 HP:0003952 Sclerotic foci of metaphyses of the elbow 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0003914 Irregular ossification of humeral metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0003911 Flared humeral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0003880 Sclerotic foci of the humerus 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0030307 Flared lower limb metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0004020 Irregular ossification of the radial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0006409 Progressive leg bowing 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0006449 Distal radial epiphyseal osteolysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0006386 Hypoplastic distal radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0010740 Osteopathia striata 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0010593 Abnormality of fibular epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0010599 Abnormality of the distal humeral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0005009 Dumbbell-shaped humerus 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0005013 Dysplastic distal radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.333333 1.003073 +HP:0011304 Broad thumb 0.000000 HP:0001163 Abnormality of the metacarpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.344828 1.000470 +HP:0011304 Broad thumb 0.000000 HP:0001504 Metacarpal osteolysis 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.343750 0.998905 +HP:0011304 Broad thumb 0.000000 HP:0001191 Abnormality of the carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.343750 0.998905 +HP:0011304 Broad thumb 0.000000 HP:0011911 Abnormality of metacarpophalangeal joint 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.343750 0.998905 +HP:0011304 Broad thumb 0.000000 HP:0006051 Metacarpal periosteal thickening 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.343750 0.998905 +HP:0011304 Broad thumb 0.000000 HP:0006507 Aplasia/hypoplasia of the humerus 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.342857 0.997607 +HP:0011304 Broad thumb 0.000000 HP:0006503 Aplasia/hypoplasia involving forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.342857 0.997607 +HP:0011304 Broad thumb 0.000000 HP:0006502 Aplasia/Hypoplasia involving the carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.342105 0.996512 +HP:0011304 Broad thumb 0.000000 HP:0010692 2-5 finger syndactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.358974 0.992757 +HP:0011304 Broad thumb 0.000000 HP:0003893 Advanced ossification of the humeral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.325000 0.990456 +HP:0011304 Broad thumb 0.000000 HP:0003892 Absent humeral epiphyseal ossification 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.325000 0.990456 +HP:0011304 Broad thumb 0.000000 HP:0004018 Flared radial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.325000 0.990456 +HP:0011304 Broad thumb 0.000000 HP:0010601 Abnormality of the proximal ulnar epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.325000 0.990456 +HP:0011304 Broad thumb 0.000000 HP:0010596 Abnormality of the proximal radial epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.325000 0.990456 +HP:0011304 Broad thumb 0.000000 HP:0001853 Bifid distal phalanx of toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0003991 Osteosclerosis of the ulna 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0003868 Cortical thickening (humeral) 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0003860 Diaphyseal sclerosis of the upper limbs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0006585 Congenital pseudoarthrosis of the clavicle 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0006208 Metaphyseal cupping of proximal phalanges 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0010205 Bullet-shaped proximal toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0010210 Triangular shaped proximal phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0010201 Triangular shaped middle phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0010160 Abnormality of the epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0010192 Triangular shaped distal phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0010196 Bullet-shaped middle toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0010187 Bullet-shaped distal toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.324324 0.989425 +HP:0011304 Broad thumb 0.000000 HP:0030309 Flared distal fibular metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.323529 0.988212 +HP:0011304 Broad thumb 0.000000 HP:0030308 Flared distal tibial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.323529 0.988212 +HP:0011304 Broad thumb 0.000000 HP:0003085 Long fibula 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.323529 0.988212 +HP:0011304 Broad thumb 0.000000 HP:0002979 Bowing of the legs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.323529 0.988212 +HP:0011304 Broad thumb 0.000000 HP:0010631 Abnormality of the epiphyses of the feet 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.323529 0.988212 +HP:0011304 Broad thumb 0.000000 HP:0010594 Abnormality of the proximal fibular epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.323529 0.988212 +HP:0011304 Broad thumb 0.000000 HP:0010595 Abnormality of the distal fibular epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.323529 0.988212 +HP:0011304 Broad thumb 0.000000 HP:0010504 Increased length of the tibia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.323529 0.988212 +HP:0011304 Broad thumb 0.000000 HP:0003953 Absent forearm bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0003862 Absent humerus 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0005776 Carpal bone malsegmentation 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0005917 Supernumerary metacarpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0009822 Aplasia involving forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0006180 Crowded carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0006070 Metacarpophalangeal joint contracture 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0006099 Metacarpophalangeal joint hyperextensibility 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0006092 Malaligned carpal bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004262 Abnormality of the capitate bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004264 Narrow carpal joint spaces 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004248 Abnormality of the lunate bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004243 Abnormality of the scaphoid 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004256 Abnormality of the trapezoid bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004259 Abnormality of the hamate bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004252 Abnormality of the trapezium 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004231 Carpal bone aplasia 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004239 Proximally placed carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0004294 Subluxation of metacarpal phalangeal joints 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0010011 Abnormality of the 3rd metacarpal 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0010010 Abnormality of the 2nd metacarpal 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0010013 Abnormality of the 5th metacarpal 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0010012 Abnormality of the 4th metacarpal 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0010009 Abnormality of the 1st metacarpal 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0005025 Hypoplastic distal humeri 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.333333 0.983653 +HP:0011304 Broad thumb 0.000000 HP:0009461 Short 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.350000 0.980270 +HP:0011304 Broad thumb 0.000000 HP:0009280 Short 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.350000 0.980270 +HP:0011304 Broad thumb 0.000000 HP:0009237 Short 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.350000 0.980270 +HP:0011304 Broad thumb 0.000000 HP:0009536 Short 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.350000 0.980270 +HP:0011304 Broad thumb 0.000000 HP:0003951 Distal humeral metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.317073 0.978302 +HP:0011304 Broad thumb 0.000000 HP:0003927 Cortical irregularity of humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.317073 0.978302 +HP:0011304 Broad thumb 0.000000 HP:0003933 Sclerosis of humeral diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.317073 0.978302 +HP:0011304 Broad thumb 0.000000 HP:0003897 Irregular ossification of the humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.317073 0.978302 +HP:0011304 Broad thumb 0.000000 HP:0004017 Exostoses of the radial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.317073 0.978302 +HP:0011304 Broad thumb 0.000000 HP:0004030 Patchy sclerosis of radial diaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.317073 0.978302 +HP:0011304 Broad thumb 0.000000 HP:0003948 Irregular epiphyses of the elbow 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0003840 Delayed upper limb epiphyseal ossification 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010378 Triangular shaped phalanges of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010373 Bullet-shaped 4th toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010361 Bullet-shaped 3rd toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010390 Triangular shaped phalanges of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010385 Bullet-shaped 5th toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010354 Triangular shaped phalanges of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010349 Bullet-shaped 2nd toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010176 Curved toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010065 Triangular shaped phalanges of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0010060 Bullet-shaped hallux phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.315789 0.976320 +HP:0011304 Broad thumb 0.000000 HP:0003099 Fibular overgrowth 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.314286 0.973993 +HP:0011304 Broad thumb 0.000000 HP:0006440 Increased density of long bone diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.314286 0.973993 +HP:0011304 Broad thumb 0.000000 HP:0006491 Abnormality of the tibial metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.314286 0.973993 +HP:0011304 Broad thumb 0.000000 HP:0010443 Bifid femur 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.314286 0.973993 +HP:0011304 Broad thumb 0.000000 HP:0010069 Bullet-shaped 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.314286 0.973993 +HP:0011304 Broad thumb 0.000000 HP:0006501 Aplasia/Hypoplasia of the radius 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.324324 0.970270 +HP:0011304 Broad thumb 0.000000 HP:0006495 Aplasia/Hypoplasia of the ulna 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.324324 0.970270 +HP:0011304 Broad thumb 0.000000 HP:0005747 Easily subluxated first metacarpophalangeal joints 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.323529 0.969080 +HP:0011304 Broad thumb 0.000000 HP:0006106 Absent trapezoid bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.323529 0.969080 +HP:0011304 Broad thumb 0.000000 HP:0004251 Lunate-triquetral fusion 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.323529 0.969080 +HP:0011304 Broad thumb 0.000000 HP:0010030 Osteolytic defects of the 1st metacarpal 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.323529 0.969080 +HP:0011304 Broad thumb 0.000000 HP:0001501 6 metacarpals 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.322581 0.967659 +HP:0011304 Broad thumb 0.000000 HP:0005900 Fifth metacarpal with ulnar notch 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.322581 0.967659 +HP:0011304 Broad thumb 0.000000 HP:0005894 Double first metacarpals 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.322581 0.967659 +HP:0011304 Broad thumb 0.000000 HP:0010033 Triangular shaped 1st metacarpal 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.322581 0.967659 +HP:0011304 Broad thumb 0.000000 HP:0000889 Abnormality of the clavicle 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.322581 0.967659 +HP:0011304 Broad thumb 0.000000 HP:0003894 Delayed humeral epiphyseal ossification 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.309524 0.966586 +HP:0011304 Broad thumb 0.000000 HP:0004997 Multicentric ossification of proximal humeral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.309524 0.966586 +HP:0011304 Broad thumb 0.000000 HP:0005093 Absent proximal radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.309524 0.966586 +HP:0011304 Broad thumb 0.000000 HP:0040070 Abnormality of upper limb bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.321429 0.965929 +HP:0011304 Broad thumb 0.000000 HP:0100440 Bullet-shaped distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0100442 Bullet-shaped distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0100441 Bullet-shaped distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0100436 Bullet-shaped middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0100435 Bullet-shaped middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0100434 Bullet-shaped middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0100487 Triangular shaped distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010329 Abnormality of the epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010323 Abnormality of the epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010341 Abnormality of the epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010335 Abnormality of the epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010167 Irregular epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010169 Pseudoepiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010168 Ivory epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010162 Absent epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0010056 Abnormality of the epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.307692 0.963722 +HP:0011304 Broad thumb 0.000000 HP:0009470 Contracture of the metacarpophalangeal joint of the 3rd finger 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.319149 0.962497 +HP:0011304 Broad thumb 0.000000 HP:0009186 Contracture of the metacarpophalangeal joint of the 5th finger 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.319149 0.962497 +HP:0011304 Broad thumb 0.000000 HP:0009277 Contracture of the metacarpophalangeal joint of the 4th finger 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.319149 0.962497 +HP:0011304 Broad thumb 0.000000 HP:0009539 Contracture of the metacarpophalangeal joint of the 2nd finger 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.319149 0.962497 +HP:0011304 Broad thumb 0.000000 HP:0009819 Lower limb phocomelia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.305556 0.960371 +HP:0011304 Broad thumb 0.000000 HP:0006508 Abnormality of tibial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.305556 0.960371 +HP:0011304 Broad thumb 0.000000 HP:0006423 Peg-like central prominence of distal tibial metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.305556 0.960371 +HP:0011304 Broad thumb 0.000000 HP:0006489 Abnormality of the femoral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.305556 0.960371 +HP:0011304 Broad thumb 0.000000 HP:0011835 Absent scaphoid 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.317073 0.959362 +HP:0011304 Broad thumb 0.000000 HP:0004059 Radial club hand 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.317073 0.959362 +HP:0011304 Broad thumb 0.000000 HP:0001495 Carpal osteolysis 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.314286 0.955136 +HP:0011304 Broad thumb 0.000000 HP:0004250 Proximally placed lunate 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.314286 0.955136 +HP:0011304 Broad thumb 0.000000 HP:0004232 Accessory carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.314286 0.955136 +HP:0011304 Broad thumb 0.000000 HP:0006599 Medial widening of clavicles 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.312500 0.952419 +HP:0011304 Broad thumb 0.000000 HP:0006587 Straight clavicles 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.312500 0.952419 +HP:0011304 Broad thumb 0.000000 HP:0000895 Lateral clavicle hook 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.312500 0.952419 +HP:0011304 Broad thumb 0.000000 HP:0003950 Flared metaphyses (elbow) 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100098 Abnormality of the epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100099 Abnormality of the epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100090 Abnormality of the epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100091 Abnormality of the epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100092 Abnormality of the epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100093 Abnormality of the epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100094 Abnormality of the epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100095 Abnormality of the epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100096 Abnormality of the epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100097 Abnormality of the epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100089 Abnormality of the epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0100088 Abnormality of the epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010206 Curved proximal toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010172 Triangular epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010170 Small epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010163 Bracket epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010165 Enlarged epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010164 Cone-shaped epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010197 Curved middle toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010188 Curved distal toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010126 Abnormality of the epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0010124 Abnormality of the epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.300000 0.951599 +HP:0011304 Broad thumb 0.000000 HP:0030299 Distal femoral metaphyseal abnormality 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.297297 0.947303 +HP:0011304 Broad thumb 0.000000 HP:0006431 Proximal femoral metaphyseal abnormality 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.297297 0.947303 +HP:0011304 Broad thumb 0.000000 HP:0006499 Abnormality of femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.297297 0.947303 +HP:0011304 Broad thumb 0.000000 HP:0010630 Abnormality of metatarsal epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.297297 0.947303 +HP:0011304 Broad thumb 0.000000 HP:0010591 Abnormality of the proximal tibial epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.297297 0.947303 +HP:0011304 Broad thumb 0.000000 HP:0010592 Abnormality of the distal tibial epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.297297 0.947303 +HP:0011304 Broad thumb 0.000000 HP:0000907 Anterior rib cupping 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.297297 0.947303 +HP:0011304 Broad thumb 0.000000 HP:0009319 Joint contracture of the 3rd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.325581 0.945456 +HP:0011304 Broad thumb 0.000000 HP:0009183 Joint contracture of the 5th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.325581 0.945456 +HP:0011304 Broad thumb 0.000000 HP:0009274 Joint contracture of the 4th finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.325581 0.945456 +HP:0011304 Broad thumb 0.000000 HP:0009537 Flexion contracture of the 2nd finger 0.000000 HP:0001167 Abnormality of finger 2.745511 0.325581 0.945456 +HP:0011304 Broad thumb 0.000000 HP:0003974 Absent radius 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.307692 0.945063 +HP:0011304 Broad thumb 0.000000 HP:0003982 Absent ulna 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.307692 0.945063 +HP:0011304 Broad thumb 0.000000 HP:0003902 Epiphyseal stippling of the humerus 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.295455 0.944363 +HP:0011304 Broad thumb 0.000000 HP:0005004 Flattened proximal radial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.295455 0.944363 +HP:0011304 Broad thumb 0.000000 HP:0009736 Tibial pseudoarthrosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.294118 0.942224 +HP:0011304 Broad thumb 0.000000 HP:0004238 Lytic defects of carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.305556 0.941777 +HP:0011304 Broad thumb 0.000000 HP:0100437 Bullet-shaped proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0100438 Bullet-shaped proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0100439 Bullet-shaped proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0010374 Curved 4th toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0010366 Triangular shaped phalanges of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0010362 Curved 3rd toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0010386 Curved 5th toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0010350 Curved 2nd toe phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0010061 Curved hallux phalanx 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0010074 Triangular shaped 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.292683 0.939923 +HP:0011304 Broad thumb 0.000000 HP:0010629 Abnormality of the cortex of the humerus 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.303030 0.937877 +HP:0011304 Broad thumb 0.000000 HP:0009829 Phocomelia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.290323 0.936126 +HP:0011304 Broad thumb 0.000000 HP:0006413 Broad tibial metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.289474 0.934756 +HP:0011304 Broad thumb 0.000000 HP:0006375 Dumbbell-shaped femur 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.289474 0.934756 +HP:0011304 Broad thumb 0.000000 HP:0002857 Genu valgum 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.289474 0.934756 +HP:0011304 Broad thumb 0.000000 HP:0002982 Tibial bowing 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.289474 0.934756 +HP:0011304 Broad thumb 0.000000 HP:0002970 Genu varum 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.289474 0.934756 +HP:0011304 Broad thumb 0.000000 HP:0010590 Abnormality of the distal femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.289474 0.934756 +HP:0011304 Broad thumb 0.000000 HP:0010502 Fibular bowing 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.289474 0.934756 +HP:0011304 Broad thumb 0.000000 HP:0010070 Curved 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.289474 0.934756 +HP:0011304 Broad thumb 0.000000 HP:0011908 Unilateral radial aplasia 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.300000 0.933176 +HP:0011304 Broad thumb 0.000000 HP:0003063 Abnormality of the humerus 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.300000 0.933176 +HP:0011304 Broad thumb 0.000000 HP:0040072 Abnormality of forearm bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.300000 0.933176 +HP:0011304 Broad thumb 0.000000 HP:0004977 Bilateral radial aplasia 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.300000 0.933176 +HP:0011304 Broad thumb 0.000000 HP:0004244 Accessory scaphoid 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.297297 0.928962 +HP:0011304 Broad thumb 0.000000 HP:0004249 Accessory lunate 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.297297 0.928962 +HP:0011304 Broad thumb 0.000000 HP:0010889 Morbus Kienboeck 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.297297 0.928962 +HP:0011304 Broad thumb 0.000000 HP:0100077 Absent epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100072 Ivory epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100073 Pseudoepiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100071 Irregular epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100083 Ivory epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100084 Pseudoepiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100082 Irregular epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100051 Pseudoepiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100050 Ivory epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100055 Absent epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100060 Irregular epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100062 Pseudoepiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100061 Ivory epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100066 Absent epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100049 Irregular epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0100044 Absent epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0011314 Abnormality of long bone morphology 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010415 Bullet-shaped distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010420 Triangular shaped distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010402 Triangular shaped proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010406 Bullet-shaped middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010411 Triangular shaped middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010397 Bullet-shaped proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010113 Absent hallux epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010119 Ivory epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010118 Irregular epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010125 Abnormality of the epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010078 Bullet-shaped distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0010083 Triangular shaped distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.285714 0.928665 +HP:0011304 Broad thumb 0.000000 HP:0009776 Adactyly 0.000000 HP:0001167 Abnormality of finger 2.745511 0.311111 0.924207 +HP:0011304 Broad thumb 0.000000 HP:0003878 Periosteal new bone (humeral) 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.294118 0.923982 +HP:0011304 Broad thumb 0.000000 HP:0000905 Progressive clavicular acroosteolysis 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.294118 0.923982 +HP:0011304 Broad thumb 0.000000 HP:0006417 Broad femoral metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.282051 0.922693 +HP:0011304 Broad thumb 0.000000 HP:0006456 Irregular proximal tibial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.282051 0.922693 +HP:0011304 Broad thumb 0.000000 HP:0006390 Anterior tibial bowing 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.282051 0.922693 +HP:0011304 Broad thumb 0.000000 HP:0006361 Irregular femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.282051 0.922693 +HP:0011304 Broad thumb 0.000000 HP:0012284 Small proximal tibial epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.282051 0.922693 +HP:0011304 Broad thumb 0.000000 HP:0012283 Small distal femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.282051 0.922693 +HP:0011304 Broad thumb 0.000000 HP:0003967 Sclerotic forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003966 Sclerotic foci in forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003970 Undermodelled forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003958 Cross-fusion of the forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003965 Pseudarthrosis of the forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003963 Lytic defects of the forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003877 Oval transradiancy (humeral) 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003875 Lytic defects (humeral) 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003874 Humerus varus 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003887 Abnormality of the humeral heads 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003879 Pseudarthrosis (humeral) 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003889 Abnormality of the deltoid tuberosities 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003866 Coarse trabeculae (humeral) 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003863 Angulated humerus 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0006441 Lateral humeral condyle aplasia 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0002818 Abnormality of the radius 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0002997 Abnormality of the ulna 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.290323 0.918002 +HP:0011304 Broad thumb 0.000000 HP:0003947 Delayed elbow epiphyseal ossification 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100076 Triangular epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100078 Bracket epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100079 Cone-shaped epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100074 Small epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100087 Triangular epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100085 Small epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100080 Enlarged epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100052 Small epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100054 Triangular epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100057 Cone-shaped epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100056 Bracket epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100058 Enlarged epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100063 Small epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100068 Cone-shaped epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100067 Bracket epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100065 Triangular epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100069 Enlarged epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100047 Enlarged epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100046 Cone-shaped epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0100045 Bracket epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0010114 Bracket epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0010116 Enlarged epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0010115 Cone-shaped epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0010123 Triangular epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0010121 Small epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0010156 Pseudoepiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0010087 Bullet-shaped proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.279070 0.917804 +HP:0011304 Broad thumb 0.000000 HP:0006257 Abnormality of carpal bone ossification 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.289474 0.916659 +HP:0011304 Broad thumb 0.000000 HP:0006202 Osteolysis of scaphoids 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.289474 0.916659 +HP:0011304 Broad thumb 0.000000 HP:0005864 Pseudoarthrosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275862 0.912514 +HP:0011304 Broad thumb 0.000000 HP:0005930 Abnormality of epiphysis morphology 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275862 0.912514 +HP:0011304 Broad thumb 0.000000 HP:0003026 Short long bone 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275862 0.912514 +HP:0011304 Broad thumb 0.000000 HP:0003100 Slender long bone 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275862 0.912514 +HP:0011304 Broad thumb 0.000000 HP:0003105 Protuberances at ends of long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275862 0.912514 +HP:0011304 Broad thumb 0.000000 HP:0006391 Overtubulated long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275862 0.912514 +HP:0011304 Broad thumb 0.000000 HP:0006367 Crumpled long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275862 0.912514 +HP:0011304 Broad thumb 0.000000 HP:0000940 Abnormal diaphysis morphology 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275862 0.912514 +HP:0011304 Broad thumb 0.000000 HP:0100531 Wind-swept deformity of the knees 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275000 0.911087 +HP:0011304 Broad thumb 0.000000 HP:0005929 Synostosis involving the tibia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275000 0.911087 +HP:0011304 Broad thumb 0.000000 HP:0005928 Synostosis involving the fibula 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275000 0.911087 +HP:0011304 Broad thumb 0.000000 HP:0005736 Short tibia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275000 0.911087 +HP:0011304 Broad thumb 0.000000 HP:0003038 Fibular hypoplasia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275000 0.911087 +HP:0011304 Broad thumb 0.000000 HP:0006438 Enlargement of the distal femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275000 0.911087 +HP:0011304 Broad thumb 0.000000 HP:0002980 Femoral bowing 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275000 0.911087 +HP:0011304 Broad thumb 0.000000 HP:0010574 Abnormality of the epiphysis of the femoral head 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.275000 0.911087 +HP:0011304 Broad thumb 0.000000 HP:0003964 Osteoporotic forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.285714 0.910686 +HP:0011304 Broad thumb 0.000000 HP:0003960 Exostoses of the forearm bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.285714 0.910686 +HP:0011304 Broad thumb 0.000000 HP:0003876 Osteoporotic humerus 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.285714 0.910686 +HP:0011304 Broad thumb 0.000000 HP:0003867 Cortical irregularity (humeral) 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.285714 0.910686 +HP:0011304 Broad thumb 0.000000 HP:0100923 Clavicular sclerosis 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.285714 0.910686 +HP:0011304 Broad thumb 0.000000 HP:0006710 Aplasia/Hypoplasia of the clavicles 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.285714 0.910686 +HP:0011304 Broad thumb 0.000000 HP:0012791 Abnormal humeral ossification 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.285714 0.910686 +HP:0011304 Broad thumb 0.000000 HP:0100229 Irregular epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100230 Ivory epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100202 Absent epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100218 Irregular epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100219 Ivory epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100224 Absent epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100207 Irregular epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100208 Ivory epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100213 Absent epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100196 Irregular epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100191 Absent epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100197 Ivory epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100157 Absent epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100152 Ivory epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100151 Irregular epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100169 Absent epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100164 Pseudoepiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100163 Ivory epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100162 Irregular epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100175 Ivory epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100174 Irregular epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100186 Ivory epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100180 Absent epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100185 Irregular epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100146 Absent epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100140 Irregular epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100141 Ivory epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100128 Ivory epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100135 Absent epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100117 Ivory epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100122 Absent epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100127 Irregular epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100106 Ivory epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100111 Absent epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100116 Irregular epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100105 Irregular epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0100100 Absent epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010179 Symphalangism affecting the phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010159 Triangular epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010127 Absent epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010133 Ivory epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010132 Irregular epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010120 Pseudoepiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010149 Absent epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010157 Small epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010150 Bracket epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010138 Absent epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010143 Irregular epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010144 Ivory epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0010092 Triangular shaped proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0005035 Shortening of all phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.272727 0.907314 +HP:0011304 Broad thumb 0.000000 HP:0001216 Delayed ossification of carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.282051 0.904829 +HP:0011304 Broad thumb 0.000000 HP:0006067 Multiple carpal ossification centers 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.282051 0.904829 +HP:0011304 Broad thumb 0.000000 HP:0004233 Advanced ossification of carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.282051 0.904829 +HP:0011304 Broad thumb 0.000000 HP:0003995 Abnormality of the radial head 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.281250 0.903544 +HP:0011304 Broad thumb 0.000000 HP:0003984 Posteriorly dislocated ulna 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.281250 0.903544 +HP:0011304 Broad thumb 0.000000 HP:0003888 Flattened humeral heads 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.281250 0.903544 +HP:0011304 Broad thumb 0.000000 HP:0003890 Prominent deltoid tuberosities 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.281250 0.903544 +HP:0011304 Broad thumb 0.000000 HP:0003068 Madelung-like forearm deformities 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.281250 0.903544 +HP:0011304 Broad thumb 0.000000 HP:0004032 Abnormality of the olecranon 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.281250 0.903544 +HP:0011304 Broad thumb 0.000000 HP:0006459 Dorsal subluxation of ulna 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.281250 0.903544 +HP:0011304 Broad thumb 0.000000 HP:0006362 Varus deformity of humeral neck 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.281250 0.903544 +HP:0011304 Broad thumb 0.000000 HP:0005766 Disproportionate shortening of the tibia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0003097 Short femur 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0003411 Proximal femoral metaphyseal irregularity 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0008783 Wide proximal femoral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0006407 Irregular distal femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0006436 Shortening of the tibia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0006387 Wide distal femoral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0006381 Rudimentary fibula 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0006398 Flat distal femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0006379 Proximal tibial hypopolasia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0002834 Flared femoral metaphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0010743 Short metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0005005 Femoral bowing present at birth, straightening with time 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0005090 Lateral femoral bowing 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0005096 Distal femoral bowing 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.268293 0.899908 +HP:0011304 Broad thumb 0.000000 HP:0003872 Exostoses (humeral) 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.277778 0.897949 +HP:0011304 Broad thumb 0.000000 HP:0003869 Cortical thinning (humeral) 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.277778 0.897949 +HP:0011304 Broad thumb 0.000000 HP:0006660 Aplastic clavicles 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.277778 0.897949 +HP:0011304 Broad thumb 0.000000 HP:0006638 Midclavicular aplasia 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.277778 0.897949 +HP:0011304 Broad thumb 0.000000 HP:0100444 Curved middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100443 Curved middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100446 Curved proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100445 Curved middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100451 Curved distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100450 Curved distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100449 Curved distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100447 Curved proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100448 Curved proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100227 Enlarged epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100232 Small epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100234 Triangular epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100253 Abnormality of the medullary cavity of the long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100201 Triangular epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100204 Cone-shaped epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100203 Bracket epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100216 Enlarged epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100223 Triangular epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100226 Cone-shaped epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100225 Bracket epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100221 Small epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100205 Enlarged epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100215 Cone-shaped epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100214 Bracket epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100212 Triangular epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100210 Small epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100193 Cone-shaped epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100194 Enlarged epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100190 Triangular epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100192 Bracket epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100199 Small epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100158 Bracket epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100159 Cone-shaped epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100154 Small epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100156 Triangular epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100168 Fragmented epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100167 Triangular epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100165 Small epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100160 Enlarged epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100177 Small epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100179 Triangular epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100170 Bracket epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100172 Enlarged epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100171 Cone-shaped epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100188 Small epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100181 Bracket epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100183 Enlarged epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100182 Cone-shaped epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100147 Bracket epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100148 Cone-shaped epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100149 Enlarged epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100143 Small epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100145 Triangular epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100137 Cone-shaped epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100138 Enlarged epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100136 Bracket epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100132 Triangular epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100130 Small epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100119 Small epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100121 Triangular epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100123 Bracket epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100124 Cone-shaped epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100125 Enlarged epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100108 Small epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100112 Bracket epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100110 Triangular epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100113 Cone-shaped epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100114 Enlarged epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100103 Enlarged epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100102 Cone-shaped epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0100101 Bracket epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0030330 Multinucleated giant chondrocytes in epiphyseal cartilage 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0003071 Flattened epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0003053 Epiphyseal deformities of tubular bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0004990 Epiphyseal streaking 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010579 Cone-shaped epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010578 Bracket epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010577 Absent epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010582 Irregular epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010583 Ivory epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010580 Enlarged epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010587 Triangular epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010584 Pseudoepiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010585 Small epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010588 Premature epimetaphyseal fusion 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010416 Curved distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010407 Curved middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010398 Curved proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010171 Epiphyseal stippling of toe phalanges 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010166 Fragmentation of the epiphyses of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010129 Cone-shaped epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010128 Bracket epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010135 Small epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010130 Enlarged epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010148 Triangular epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010151 Cone-shaped epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010139 Bracket epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010137 Triangular epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010140 Cone-shaped epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010141 Enlarged epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010146 Small epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0010079 Curved distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0200003 Splayed epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.266667 0.897177 +HP:0011304 Broad thumb 0.000000 HP:0009164 Abnormal calcification of the carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.275000 0.893448 +HP:0011304 Broad thumb 0.000000 HP:0045001 Abnormal ossification of the trapezium 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.275000 0.893448 +HP:0011304 Broad thumb 0.000000 HP:0045003 Abnormal ossification of the scaphoid 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.275000 0.893448 +HP:0011304 Broad thumb 0.000000 HP:0045004 Abnormal ossification of the trapezoid bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.275000 0.893448 +HP:0011304 Broad thumb 0.000000 HP:0006069 Severe carpal ossification delay 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.275000 0.893448 +HP:0011304 Broad thumb 0.000000 HP:0004253 Absent trapezium 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.275000 0.893448 +HP:0011304 Broad thumb 0.000000 HP:0003997 Hypoplastic radial head 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.272727 0.889748 +HP:0011304 Broad thumb 0.000000 HP:0003996 Flattened radial head 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.272727 0.889748 +HP:0011304 Broad thumb 0.000000 HP:0003979 Lytic defects of the radius 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.272727 0.889748 +HP:0011304 Broad thumb 0.000000 HP:0003980 Pseudarthrosis of the radius 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.272727 0.889748 +HP:0011304 Broad thumb 0.000000 HP:0040061 Osteosclerosis of the radius 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.272727 0.889748 +HP:0011304 Broad thumb 0.000000 HP:0004034 Irregular olecranon 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.272727 0.889748 +HP:0011304 Broad thumb 0.000000 HP:0001440 Metatarsal synostosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.261905 0.889130 +HP:0011304 Broad thumb 0.000000 HP:0003371 Enlargement of the proximal femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.261905 0.889130 +HP:0011304 Broad thumb 0.000000 HP:0008789 Cone-shaped capital femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.261905 0.889130 +HP:0011304 Broad thumb 0.000000 HP:0006414 Distal tibial bowing 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.261905 0.889130 +HP:0011304 Broad thumb 0.000000 HP:0005003 Aplasia/Hypoplasia of the capital femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.261905 0.889130 +HP:0011304 Broad thumb 0.000000 HP:0005067 Proximal fibular overgrowth 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.261905 0.889130 +HP:0011304 Broad thumb 0.000000 HP:0001859 Distal symphalangism (feet) 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0100237 Proximal symphalangism (feet) 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0011928 Short proximal phalanx of toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0003795 Short middle phalanx of toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0010209 Symphalangism affecting the proximal phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0010200 Symphalangism affecting the middle phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0010191 Symphalangism affecting the distal phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0010154 Irregular epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0010155 Ivory epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0010088 Curved proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.260870 0.887372 +HP:0011304 Broad thumb 0.000000 HP:0003986 Exostoses of the radius 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.270270 0.885731 +HP:0011304 Broad thumb 0.000000 HP:0003985 Exostoses of the ulna 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.270270 0.885731 +HP:0011304 Broad thumb 0.000000 HP:0030289 Flattened femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0100254 Stenosis of the medullary cavity of the long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0100252 Diaphyseal dysplasia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0003013 Bulging epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0006465 Periosteal thickening of long tubular bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0002656 Epiphyseal dysplasia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0004993 Slender long bones with narrow diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0012564 Premature epimetaphyseal fusion in tibia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0012565 Premature epimetaphyseal fusion in fibula 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0012566 Premature epimetaphyseal fusion in radius 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0012567 Premature epimetaphyseal fusion in ulna 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0012562 Premature epimetaphyseal fusion in hand 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0012563 Premature epimetaphyseal fusion in foot 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0005066 Cone-shaped epiphyses fused within their metaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.258065 0.882588 +HP:0011304 Broad thumb 0.000000 HP:0045002 Absent ossification of the trapezium 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.268293 0.882485 +HP:0011304 Broad thumb 0.000000 HP:0005715 Flattened knee epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.257143 0.881010 +HP:0011304 Broad thumb 0.000000 HP:0006400 Absent knee epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.257143 0.881010 +HP:0011304 Broad thumb 0.000000 HP:0005892 Proximal tibial and fibular fusion 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0011845 Short second metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0003370 Flat capital femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0008784 Wide capital femoral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0006461 Proximal femoral epiphysiolysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0004704 Short fifth metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0004686 Short third metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0004689 Short fourth metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0010105 Short first metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0005041 Irregular capital femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255814 0.878730 +HP:0011304 Broad thumb 0.000000 HP:0006239 Shortening of all middle phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255319 0.877880 +HP:0011304 Broad thumb 0.000000 HP:0010377 Symphalangism affecting the phalanges of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255319 0.877880 +HP:0011304 Broad thumb 0.000000 HP:0010365 Symphalangism affecting the phalanges of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255319 0.877880 +HP:0011304 Broad thumb 0.000000 HP:0010389 Symphalangism affecting the phalanges of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255319 0.877880 +HP:0011304 Broad thumb 0.000000 HP:0010353 Symphalangism affecting the phalanges of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255319 0.877880 +HP:0011304 Broad thumb 0.000000 HP:0010152 Enlarged epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255319 0.877880 +HP:0011304 Broad thumb 0.000000 HP:0010064 Symphalangism affecting the phalanges of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.255319 0.877880 +HP:0011304 Broad thumb 0.000000 HP:0006176 Two carpal ossification centers present at birth 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.261905 0.871916 +HP:0011304 Broad thumb 0.000000 HP:0004246 Delayed ossification of the scaphoid 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.261905 0.871916 +HP:0011304 Broad thumb 0.000000 HP:0004257 Delayed ossification of the trapezoid bone 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.261905 0.871916 +HP:0011304 Broad thumb 0.000000 HP:0004254 Delayed ossification of the trapezium 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.261905 0.871916 +HP:0011304 Broad thumb 0.000000 HP:0100470 Symphalangism affecting the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100471 Symphalangism affecting the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100474 Symphalangism affecting the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100475 Symphalangism affecting the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100472 Symphalangism affecting the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100473 Symphalangism affecting the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100231 Pseudoepiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100220 Pseudoepiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100209 Pseudoepiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100198 Pseudoepiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100153 Pseudoepiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100176 Pseudoepiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100187 Pseudoepiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100142 Pseudoepiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0005743 Avascular necrosis of the capital femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100129 Pseudoepiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100118 Pseudoepiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100107 Pseudoepiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100075 Stippling of the epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100070 Fragmentation of the epiphyses of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100086 Stippling of the epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100081 Fragmentation of the epiphyses of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100053 Stippling of the epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100059 Fragmentation of the epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100064 Stippling of the epiphyses of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0100048 Fragmentation of the epiphyses of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0003090 Hypoplasia of the capital femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0008114 Metatarsal diaphyseal endosteal sclerosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0006392 Increased density of long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0006172 Flattened, squared-off epiphyses of tubular bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0010117 Fragmentation of the epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0010122 Stippling of the epiphyses of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0010145 Pseudoepiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0010073 Synostosis involving the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0005063 Fragmented, irregular epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.250000 0.868687 +HP:0011304 Broad thumb 0.000000 HP:0002974 Radioulnar synostosis 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.256410 0.862721 +HP:0011304 Broad thumb 0.000000 HP:0004234 Bone-in-a-bone appearance of carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.255814 0.861718 +HP:0011304 Broad thumb 0.000000 HP:0100366 Short phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.244898 0.859778 +HP:0011304 Broad thumb 0.000000 HP:0100367 Short phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.244898 0.859778 +HP:0011304 Broad thumb 0.000000 HP:0100368 Short phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.244898 0.859778 +HP:0011304 Broad thumb 0.000000 HP:0010431 Short phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.244898 0.859778 +HP:0011304 Broad thumb 0.000000 HP:0010134 Pseudoepiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.244898 0.859778 +HP:0011304 Broad thumb 0.000000 HP:0100734 Abnormality of vertebral epiphysis morphology 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.242424 0.855424 +HP:0011304 Broad thumb 0.000000 HP:0003084 Fractures of the long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.242424 0.855424 +HP:0011304 Broad thumb 0.000000 HP:0010561 Undulate ribs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.242424 0.855424 +HP:0011304 Broad thumb 0.000000 HP:0000883 Thin ribs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.242424 0.855424 +HP:0011304 Broad thumb 0.000000 HP:0000892 Bifid ribs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.242424 0.855424 +HP:0011304 Broad thumb 0.000000 HP:0000900 Thickened ribs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.242424 0.855424 +HP:0011304 Broad thumb 0.000000 HP:0000935 Thickened cortex of long bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.242424 0.855424 +HP:0011304 Broad thumb 0.000000 HP:0003083 Dislocated radial head 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.250000 0.851869 +HP:0011304 Broad thumb 0.000000 HP:0004241 Stippled calcification in carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.250000 0.851869 +HP:0011304 Broad thumb 0.000000 HP:0004240 Sclerotic foci within carpal bones 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.250000 0.851869 +HP:0011304 Broad thumb 0.000000 HP:0005037 Proximal radio-ulnar synostosis 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.250000 0.851869 +HP:0011304 Broad thumb 0.000000 HP:0001857 Short distal phalanx of toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100228 Fragmentation of the epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100233 Stippling of the epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100200 Stippling of the epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100217 Fragmentation of the epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100222 Stippling of the epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100206 Fragmentation of the epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100211 Stippling of the epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100195 Fragmentation of the epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100155 Stippling of the epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100150 Fragmentation of the epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100166 Stippling of the epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100161 Fragmentation of the epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100178 Stippling of the epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100173 Fragmentation of the epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100189 Stippling of the epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100184 Fragmentation of the epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100139 Fragmentation of the epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100144 Stippling of the epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100131 Stippling of the epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100120 Stippling of the epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100126 Fragmentation of the epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100109 Stippling of the epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100115 Fragmentation of the epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100104 Fragmentation of the epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0010136 Stippling of the epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0010131 Fragmentation of the epiphysis of the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0010158 Stippling of the epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0010142 Fragmentation of the epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0010147 Stippling of the epiphysis of the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.240000 0.851136 +HP:0011304 Broad thumb 0.000000 HP:0100329 Tarsometatarsal synostosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.239130 0.849592 +HP:0011304 Broad thumb 0.000000 HP:0006450 Multicentric ossification of proximal femoral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.239130 0.849592 +HP:0011304 Broad thumb 0.000000 HP:0100478 Symphalangism affecting the distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0100476 Symphalangism affecting the distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0100477 Symphalangism affecting the distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0005793 Shortening of all distal phalanges of the toes 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0005665 Massively thickened long bone cortices 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0003034 Diaphyseal sclerosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0006415 Cortically dense long tubular bones 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0010401 Symphalangism affecting the proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0010410 Symphalangism affecting the middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0000902 Rib fusion 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.235294 0.842750 +HP:0011304 Broad thumb 0.000000 HP:0005856 Ulnar radial head dislocation 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.243902 0.841416 +HP:0011304 Broad thumb 0.000000 HP:0005798 Posterior radial head dislocation 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.243902 0.841416 +HP:0011304 Broad thumb 0.000000 HP:0003048 Radial head subluxation 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.243902 0.841416 +HP:0011304 Broad thumb 0.000000 HP:0005070 Proximal radial head dislocation 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.243902 0.841416 +HP:0011304 Broad thumb 0.000000 HP:0005084 Anterior radial head dislocation 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.243902 0.841416 +HP:0011304 Broad thumb 0.000000 HP:0005050 Anterolateral radial head dislocation 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.243902 0.841416 +HP:0011304 Broad thumb 0.000000 HP:0008797 Early ossification of capital femoral epiphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.234043 0.840507 +HP:0011304 Broad thumb 0.000000 HP:0006442 Hypoplasia of proximal fibula 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.234043 0.840507 +HP:0011304 Broad thumb 0.000000 HP:0010153 Fragmentation of the epiphysis of the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.230769 0.834607 +HP:0011304 Broad thumb 0.000000 HP:0008828 Delayed proximal femoral epiphyseal ossification 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.229167 0.831705 +HP:0011304 Broad thumb 0.000000 HP:0005739 Posterior subluxation of radial head 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.238095 0.831339 +HP:0011304 Broad thumb 0.000000 HP:0003041 Humeroradial synostosis 0.000000 HP:0040070 Abnormality of upper limb bone 2.902724 0.238095 0.831339 +HP:0011304 Broad thumb 0.000000 HP:0005791 Cortical thickening of long bone diaphyses 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.228571 0.830623 +HP:0011304 Broad thumb 0.000000 HP:0002663 Delayed epiphyseal ossification 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.228571 0.830623 +HP:0011304 Broad thumb 0.000000 HP:0000913 Posterior rib fusion 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.228571 0.830623 +HP:0011304 Broad thumb 0.000000 HP:0010111 Short phalanx of hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.226415 0.826696 +HP:0011304 Broad thumb 0.000000 HP:0010091 Symphalangism affecting the proximal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.226415 0.826696 +HP:0011304 Broad thumb 0.000000 HP:0008820 Absent ossification of capital femoral epiphysis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.224490 0.823175 +HP:0011304 Broad thumb 0.000000 HP:0100396 Short proximal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0100395 Short proximal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0100397 Short proximal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0100392 Short middle phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0100391 Short distal phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0100394 Short middle phalanx of the 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0100393 Short middle phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0100390 Short distal phalanx of the 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0100389 Short distal phalanx of the 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0006016 Delayed phalangeal epiphyseal ossification 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0010655 Epiphyseal stippling 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0010437 Short proximal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0010435 Short middle phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0010433 Short distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.222222 0.819006 +HP:0011304 Broad thumb 0.000000 HP:0005756 Neonatal epiphyseal stippling 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.216216 0.807862 +HP:0011304 Broad thumb 0.000000 HP:0004695 Calcaneal epiphyseal stippling 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.216216 0.807862 +HP:0011304 Broad thumb 0.000000 HP:0005045 Diaphyseal cortical sclerosis 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.216216 0.807862 +HP:0011304 Broad thumb 0.000000 HP:0100480 Proximal/middle symphalangism of 3rd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.214286 0.804249 +HP:0011304 Broad thumb 0.000000 HP:0100481 Proximal/middle symphalangism of 4th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.214286 0.804249 +HP:0011304 Broad thumb 0.000000 HP:0100484 Symphalangism of the proximal phalanx of the 3rd toe with the 3rd metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.214286 0.804249 +HP:0011304 Broad thumb 0.000000 HP:0100486 Symphalangism of the proximal phalanx of the 5th toe with the 5th metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.214286 0.804249 +HP:0011304 Broad thumb 0.000000 HP:0010419 Symphalangism affecting the distal phalanx of the 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.214286 0.804249 +HP:0011304 Broad thumb 0.000000 HP:0000773 Short ribs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.210526 0.797162 +HP:0011304 Broad thumb 0.000000 HP:0010103 Short distal phalanx of hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.206897 0.790261 +HP:0011304 Broad thumb 0.000000 HP:0006668 Twelfth rib hypoplasia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.205128 0.786875 +HP:0011304 Broad thumb 0.000000 HP:0006657 Hypoplasia of first ribs 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.205128 0.786875 +HP:0011304 Broad thumb 0.000000 HP:0100482 Proximal/middle symphalangism of 5th toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.203390 0.783535 +HP:0011304 Broad thumb 0.000000 HP:0100483 Symphalangism of the proximal phalanx of the 2nd toe with the 2nd metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.203390 0.783535 +HP:0011304 Broad thumb 0.000000 HP:0100485 Symphalangism of the proximal phalanx of the 4th toe with the 4th metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.203390 0.783535 +HP:0011304 Broad thumb 0.000000 HP:0008083 2nd-5th toe middle phalangeal hypoplasia 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.203390 0.783535 +HP:0011304 Broad thumb 0.000000 HP:0010082 Symphalangism affecting the distal phalanx of the hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.203390 0.783535 +HP:0011304 Broad thumb 0.000000 HP:0010107 Short proximal phalanx of hallux 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.200000 0.776978 +HP:0011304 Broad thumb 0.000000 HP:0100488 Synostosis of the proximal phalanx of the hallux with the 1st metatarsal 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.196721 0.770582 +HP:0011304 Broad thumb 0.000000 HP:0100489 Proximal/middle symphalangism of 2nd toe 0.000000 HP:0011314 Abnormality of long bone morphology 3.018471 0.187500 0.752305 +HP:0010055 Broad hallux 0.000000 HP:0010055 Broad hallux 0.000000 HP:0010055 Broad hallux 7.726410 1.000000 2.779642 +HP:0010055 Broad hallux 0.000000 HP:0008111 Broad distal hallux 0.000000 HP:0010055 Broad hallux 7.726410 0.944444 2.701326 +HP:0010055 Broad hallux 0.000000 HP:0001837 Broad toe 0.000000 HP:0001837 Broad toe 7.410301 0.882353 2.557049 +HP:0010055 Broad hallux 0.000000 HP:0100042 Broad 4th toe 0.000000 HP:0001837 Broad toe 7.410301 0.789474 2.418727 +HP:0010055 Broad hallux 0.000000 HP:0100041 Broad 3rd toe 0.000000 HP:0001837 Broad toe 7.410301 0.789474 2.418727 +HP:0010055 Broad hallux 0.000000 HP:0100040 Broad 2nd toe 0.000000 HP:0001837 Broad toe 7.410301 0.789474 2.418727 +HP:0010055 Broad hallux 0.000000 HP:0100043 Broad 5th toe 0.000000 HP:0001837 Broad toe 7.410301 0.789474 2.418727 +HP:0010055 Broad hallux 0.000000 HP:0001844 Abnormality of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.882353 2.196171 +HP:0010055 Broad hallux 0.000000 HP:0010051 Deviation of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.789474 2.077371 +HP:0010055 Broad hallux 0.000000 HP:0011926 Proximal placement of hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.750000 2.024770 +HP:0010055 Broad hallux 0.000000 HP:0008080 Hallux varus 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.750000 2.024770 +HP:0010055 Broad hallux 0.000000 HP:0010711 1-2 toe syndactyly 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.750000 2.024770 +HP:0010055 Broad hallux 0.000000 HP:0010057 Abnormality of the phalanges of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.750000 2.024770 +HP:0010055 Broad hallux 0.000000 HP:0001822 Hallux valgus 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.714286 1.975974 +HP:0010055 Broad hallux 0.000000 HP:0040018 Clinodactyly of hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.681818 1.930542 +HP:0010055 Broad hallux 0.000000 HP:0002601 Paresis of extensor muscles of the big toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.681818 1.930542 +HP:0010055 Broad hallux 0.000000 HP:0010053 Abnormality of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.681818 1.930542 +HP:0010055 Broad hallux 0.000000 HP:0010066 Duplication of phalanx of hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.681818 1.930542 +HP:0010055 Broad hallux 0.000000 HP:0001841 Preaxial foot polydactyly 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.652174 1.888108 +HP:0010055 Broad hallux 0.000000 HP:0001459 1-3 toe syndactyly 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.652174 1.888108 +HP:0010055 Broad hallux 0.000000 HP:0010101 Partial duplication of the phalanges of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.652174 1.888108 +HP:0010055 Broad hallux 0.000000 HP:0010100 Complete duplication of hallux phalanx 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.652174 1.888108 +HP:0010055 Broad hallux 0.000000 HP:0010052 Abnormality of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.652174 1.888108 +HP:0010055 Broad hallux 0.000000 HP:0001847 Long hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.625000 1.848354 +HP:0010055 Broad hallux 0.000000 HP:0005873 Polysyndactyly of hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.625000 1.848354 +HP:0010055 Broad hallux 0.000000 HP:0010065 Triangular shaped phalanges of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.625000 1.848354 +HP:0010055 Broad hallux 0.000000 HP:0010060 Bullet-shaped hallux phalanx 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.625000 1.848354 +HP:0010055 Broad hallux 0.000000 HP:0010760 Absent toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.600000 1.811009 +HP:0010055 Broad hallux 0.000000 HP:0010056 Abnormality of the epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.600000 1.811009 +HP:0010055 Broad hallux 0.000000 HP:0001780 Abnormality of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.823529 1.785733 +HP:0010055 Broad hallux 0.000000 HP:0011305 Partial absence of toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.576923 1.775841 +HP:0010055 Broad hallux 0.000000 HP:0008362 Aplasia/Hypoplasia of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.576923 1.775841 +HP:0010055 Broad hallux 0.000000 HP:0010126 Abnormality of the epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.576923 1.775841 +HP:0010055 Broad hallux 0.000000 HP:0010124 Abnormality of the epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.576923 1.775841 +HP:0010055 Broad hallux 0.000000 HP:0010062 Osteolytic defects of the phalanges of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.576923 1.775841 +HP:0010055 Broad hallux 0.000000 HP:0010084 Duplication of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.576923 1.775841 +HP:0010055 Broad hallux 0.000000 HP:0001849 Oligodactyly (feet) 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0010712 1-4 toe syndactyly 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0010331 Aplasia/Hypoplasia of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0010325 Aplasia/Hypoplasia of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0010343 Aplasia/Hypoplasia of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0010337 Aplasia/Hypoplasia of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0010061 Curved hallux phalanx 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0010074 Triangular shaped 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0010093 Duplication of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0012386 Absent hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.555556 1.742645 +HP:0010055 Broad hallux 0.000000 HP:0001845 Overlapping toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0001852 Sandal gap 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0001765 Hammertoe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0100498 Deviation of toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0008094 Widely spaced toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0011308 Slender toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0011307 Splayed toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0011309 Tapered toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0010322 Abnormality of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0010321 Abnormality of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0010320 Abnormality of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0010319 Abnormality of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.777778 1.735421 +HP:0010055 Broad hallux 0.000000 HP:0010113 Absent hallux epiphysis 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0010119 Ivory epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0010118 Irregular epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0010125 Abnormality of the epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0010078 Bullet-shaped distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0010083 Triangular shaped distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0010097 Partial duplication of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0010096 Complete duplication of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0200054 Monodactyly (feet) 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.535714 1.711242 +HP:0010055 Broad hallux 0.000000 HP:0100747 Macrodactyly of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.736842 1.689134 +HP:0010055 Broad hallux 0.000000 HP:0001770 Toe syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.736842 1.689134 +HP:0010055 Broad hallux 0.000000 HP:0100500 Fibular deviation of toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.736842 1.689134 +HP:0010055 Broad hallux 0.000000 HP:0100499 Tibial deviation of toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.736842 1.689134 +HP:0010055 Broad hallux 0.000000 HP:0010161 Abnormality of the phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.736842 1.689134 +HP:0010055 Broad hallux 0.000000 HP:0010185 Aplasia/Hypoplasia of the distal phalanges of the toes 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010109 Short hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010114 Bracket epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010116 Enlarged epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010115 Cone-shaped epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010123 Triangular epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010121 Small epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010156 Pseudoepiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010087 Bullet-shaped proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010095 Partial duplication of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0010099 Partial duplication of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.517241 1.681479 +HP:0010055 Broad hallux 0.000000 HP:0100944 Sclerosis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010159 Triangular epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010127 Absent epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010133 Ivory epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010132 Irregular epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010120 Pseudoepiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010149 Absent epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010157 Small epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010150 Bracket epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010138 Absent epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010143 Irregular epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010144 Ivory epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010058 Aplasia/Hypoplasia of the phalanges of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010063 Patchy sclerosis of hallux phalanx 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010071 Osteolytic defects of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010080 Osteolytic defects of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010092 Triangular shaped proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0010094 Complete duplication of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.500000 1.653218 +HP:0010055 Broad hallux 0.000000 HP:0001863 Toe clinodactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010717 Osseous syndactyly of toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010332 Deviation of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010326 Deviation of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010344 Deviation of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010338 Deviation of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010181 Duplication of phalanx of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010183 Abnormality of the middle phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010182 Abnormality of the distal phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010184 Abnormality of toe proximal phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.700000 1.646365 +HP:0010055 Broad hallux 0.000000 HP:0010129 Cone-shaped epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010128 Bracket epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010135 Small epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010130 Enlarged epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010148 Triangular epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010151 Cone-shaped epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010139 Bracket epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010137 Triangular epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010140 Cone-shaped epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010141 Enlarged epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010146 Small epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0010079 Curved distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.483871 1.626334 +HP:0010055 Broad hallux 0.000000 HP:0100760 Clubbing of toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0001829 Foot polydactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0009779 3-4 toe syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0100345 Tibial deviation of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0100347 Tibial deviation of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0100341 Tibial deviation of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0100343 Tibial deviation of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0008141 Dislocation of toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0008096 Medially deviated second toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0004692 4-5 toe syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0004691 2-3 toe syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0010510 Hypermobility of toe joints 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0010330 Abnormality of the phalanges of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0010324 Abnormality of phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0010342 Abnormality of the phalanges of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0010336 Abnormality of the phalanges of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.666667 1.606688 +HP:0010055 Broad hallux 0.000000 HP:0010713 1-5 toe syndactyly 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.468750 1.600721 +HP:0010055 Broad hallux 0.000000 HP:0010645 Aplasia of the distal phalanges of the toes 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.468750 1.600721 +HP:0010055 Broad hallux 0.000000 HP:0010212 Flexion contracture of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.468750 1.600721 +HP:0010055 Broad hallux 0.000000 HP:0010154 Irregular epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.468750 1.600721 +HP:0010055 Broad hallux 0.000000 HP:0010155 Ivory epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.468750 1.600721 +HP:0010055 Broad hallux 0.000000 HP:0010088 Curved proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.468750 1.600721 +HP:0010055 Broad hallux 0.000000 HP:0010089 Osteolytic defects of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.468750 1.600721 +HP:0010055 Broad hallux 0.000000 HP:0009776 Adactyly 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.454545 1.576281 +HP:0010055 Broad hallux 0.000000 HP:0010110 Aplasia of the phalanges of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.454545 1.576281 +HP:0010055 Broad hallux 0.000000 HP:0010152 Enlarged epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.454545 1.576281 +HP:0010055 Broad hallux 0.000000 HP:0010064 Symphalangism affecting the phalanges of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.454545 1.576281 +HP:0010055 Broad hallux 0.000000 HP:0100344 Fibular deviation of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0100346 Fibular deviation of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0100340 Fibular deviation of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0100342 Fibular deviation of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0010621 Cutaneous syndactyly of toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0010440 Ectopic accesory toe-like appendage 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0010211 Duplication of proximal phalanx of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0010202 Duplication of middle phalanx of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0010175 Bullet-shaped toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0010193 Duplication of distal phalanx of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0010180 Triangular shaped phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.636364 1.569748 +HP:0010055 Broad hallux 0.000000 HP:0100362 Aplasia of the phalanges of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0100363 Aplasia of the phalanges of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0100364 Aplasia of the phalanges of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010430 Aplasia of the phalanges of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010214 Contracture of the interphalangeal joint of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010215 Contractures of the metatarsophalangeal joint of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010213 Contracture of the tarsometatarsal joint of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010117 Fragmentation of the epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010122 Stippling of the epiphyses of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010145 Pseudoepiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010059 Broad hallux phalanx 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0010076 Aplasia/Hypoplasia of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.441176 1.552927 +HP:0010055 Broad hallux 0.000000 HP:0001864 Clinodactyly of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0005824 Clinodactyly of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0005767 1-2 toe complete cutaneous syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0005768 2-4 toe cutaneous syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0005709 2-3 toe cutaneous syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0011918 Clinodactyly of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0008115 Clinodactyly of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010691 Mirror image foot polydactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010511 Long toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010370 Abnormality of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010369 Abnormality of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010368 Abnormality of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010367 Duplication of phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010358 Abnormality of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010357 Abnormality of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010393 Abnormality of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010394 Abnormality of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010391 Duplication of the phalanges of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010392 Abnormality of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010382 Abnormality of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010380 Abnormality of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010381 Abnormality of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010379 Duplication of phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010356 Abnormality of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010355 Duplication of the phalanges of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0010112 Mesoaxial foot polydactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.608696 1.535243 +HP:0010055 Broad hallux 0.000000 HP:0100377 Aplasia/hypoplasia of the proximal phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100375 Aplasia/hypoplasia of the proximal phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100376 Aplasia/hypoplasia of the proximal phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100373 Aplasia/Hypoplasia of the middle phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100374 Aplasia/Hypoplasia of the middle phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100371 Aplasia/Hypoplasia of the distal phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100372 Aplasia/Hypoplasia of the middle phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100370 Aplasia/Hypoplasia of the distal phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100366 Short phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100367 Short phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100368 Short phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0100369 Aplasia/Hypoplasia of the distal phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0010413 Aplasia/Hypoplasia of the distal phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0010431 Short phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0010404 Aplasia/Hypoplasia of the middle phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0010395 Aplasia/hypoplasia of the proximal phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0010134 Pseudoepiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.428571 1.530581 +HP:0010055 Broad hallux 0.000000 HP:0001857 Short distal phalanx of toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.416667 1.509175 +HP:0010055 Broad hallux 0.000000 HP:0010136 Stippling of the epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.416667 1.509175 +HP:0010055 Broad hallux 0.000000 HP:0010131 Fragmentation of the epiphysis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.416667 1.509175 +HP:0010055 Broad hallux 0.000000 HP:0010158 Stippling of the epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.416667 1.509175 +HP:0010055 Broad hallux 0.000000 HP:0010142 Fragmentation of the epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.416667 1.509175 +HP:0010055 Broad hallux 0.000000 HP:0010147 Stippling of the epiphysis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.416667 1.509175 +HP:0010055 Broad hallux 0.000000 HP:0010081 Patchy sclerosis of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.416667 1.509175 +HP:0010055 Broad hallux 0.000000 HP:0010085 Aplasia/Hypoplasia of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.416667 1.509175 +HP:0010055 Broad hallux 0.000000 HP:0001991 Aplasia/Hypoplasia of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0001830 Postaxial foot polydactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0001842 Acroosteolysis (feet) 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0001853 Bifid distal phalanx of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0100924 Sclerosis of toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0006208 Metaphyseal cupping of proximal phalanges 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010714 2-4 toe syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010716 3-5 toe syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010429 Complete duplication of the phalanges of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010428 Partial duplication of phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010205 Bullet-shaped proximal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010210 Triangular shaped proximal phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010201 Triangular shaped middle phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010177 Osteolytic defects of the phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010160 Abnormality of the epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010192 Triangular shaped distal phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010196 Bullet-shaped middle toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0010187 Bullet-shaped distal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.583333 1.502918 +HP:0010055 Broad hallux 0.000000 HP:0005793 Shortening of all distal phalanges of the toes 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.405405 1.488640 +HP:0010055 Broad hallux 0.000000 HP:0010072 Patchy sclerosis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.405405 1.488640 +HP:0010055 Broad hallux 0.000000 HP:0030031 Small toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0005817 Postaxial polysyndactyly of foot 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0100929 Sclerosis of 5th toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0100928 Sclerosis of 4th toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0100927 Sclerosis of 3rd toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0100926 Sclerosis of 2nd toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0100930 Sclerosis of hallux phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010378 Triangular shaped phalanges of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010373 Bullet-shaped 4th toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010361 Bullet-shaped 3rd toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010390 Triangular shaped phalanges of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010385 Bullet-shaped 5th toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010334 Polydactyly affecting the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010328 Polydactyly affecting the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010354 Triangular shaped phalanges of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010349 Bullet-shaped 2nd toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010340 Polydactyly affecting the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010176 Curved toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010173 Aplasia/Hypoplasia of the phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.560000 1.472553 +HP:0010055 Broad hallux 0.000000 HP:0010153 Fragmentation of the epiphysis of the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.394737 1.468923 +HP:0010055 Broad hallux 0.000000 HP:0010077 Broad distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.394737 1.468923 +HP:0010055 Broad hallux 0.000000 HP:0010111 Short phalanx of hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.384615 1.449967 +HP:0010055 Broad hallux 0.000000 HP:0010102 Aplasia of the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.384615 1.449967 +HP:0010055 Broad hallux 0.000000 HP:0010086 Broad proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.384615 1.449967 +HP:0010055 Broad hallux 0.000000 HP:0010091 Symphalangism affecting the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.384615 1.449967 +HP:0010055 Broad hallux 0.000000 HP:0010090 Patchy sclerosis of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.384615 1.449967 +HP:0010055 Broad hallux 0.000000 HP:0001831 Short toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100440 Bullet-shaped distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100442 Bullet-shaped distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100441 Bullet-shaped distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100436 Bullet-shaped middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100435 Bullet-shaped middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100434 Bullet-shaped middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100487 Triangular shaped distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100402 Duplication of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100400 Duplication of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100406 Duplication of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100399 Duplication of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100398 Duplication of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100945 Sclerosis of the 1st metatarsal 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100948 Sclerosis of distal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100946 Sclerosis of proximal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100947 Sclerosis of middle toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010412 Duplication of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010403 Duplication of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010329 Abnormality of the epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010323 Abnormality of the epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010341 Abnormality of the epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010335 Abnormality of the epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010207 Osteolytic defect of the proximal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010167 Irregular epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010169 Pseudoepiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010168 Ivory epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010162 Absent epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010198 Osteolytic defects of the middle phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0010189 Osteolytic defects of the distal phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.538462 1.443958 +HP:0010055 Broad hallux 0.000000 HP:0100396 Short proximal phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100395 Short proximal phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100397 Short proximal phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100392 Short middle phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100391 Short distal phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100394 Short middle phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100393 Short middle phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100390 Short distal phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100389 Short distal phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100384 Absent proximal phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100385 Aplasia of the proximal phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100386 Aplasia of the proximal phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100380 Aplasia of the distal phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100381 Absent middle phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100382 Aplasia of the middle phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100383 Aplasia of the middle phalanx of the 5th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100379 Aplasia of the distal phalanx of the 4th toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0100378 Absent distal phalanx of the 3rd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0010436 Aplasia of the proximal phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0010437 Short proximal phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0010435 Short middle phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0010432 Absent distal phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0010433 Short distal phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.375000 1.431729 +HP:0010055 Broad hallux 0.000000 HP:0001870 Acroosteolysis of distal phalanges (feet) 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100401 Duplication of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100418 Partial duplication of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100417 Partial duplication of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100416 Partial duplication of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100424 Partial duplication of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100420 Partial duplication of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100404 Duplication of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100403 Duplication of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100405 Duplication of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100098 Abnormality of the epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100099 Abnormality of the epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100090 Abnormality of the epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100091 Abnormality of the epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100092 Abnormality of the epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100093 Abnormality of the epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100094 Abnormality of the epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100095 Abnormality of the epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100096 Abnormality of the epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100097 Abnormality of the epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100089 Abnormality of the epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0100088 Abnormality of the epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010746 Hypoplasia of the phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010745 Aplasia of the phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010421 Duplication of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010375 Osteolytic defects of the phalanges of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010363 Osteolytic defects of the phalanges of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010387 Osteolytic defects of the phalanges of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010351 Osteolytic defects of the phalanges of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010203 Aplasia/hypoplasia of proximal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010206 Curved proximal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010172 Triangular epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010170 Small epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010178 Patchy sclerosis of toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010163 Bracket epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010165 Enlarged epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010164 Cone-shaped epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010194 Aplasia/Hypoplasia of the middle phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010197 Curved middle toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010188 Curved distal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.518519 1.416966 +HP:0010055 Broad hallux 0.000000 HP:0010106 Aplasia of the proximal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.365854 1.414161 +HP:0010055 Broad hallux 0.000000 HP:0200113 Aphalangy of hands and feet 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.357143 1.397224 +HP:0010055 Broad hallux 0.000000 HP:0001885 Short 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100437 Bullet-shaped proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100438 Bullet-shaped proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100439 Bullet-shaped proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100460 Osteolytic defects of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100458 Osteolytic defects of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100459 Osteolytic defects of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100457 Osteolytic defects of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100456 Osteolytic defects of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100455 Osteolytic defects of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100454 Osteolytic defects of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100453 Osteolytic defects of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100452 Osteolytic defects of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100419 Partial duplication of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100415 Complete duplication of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100414 Complete duplication of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100423 Partial duplication of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100421 Partial duplication of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100422 Partial duplication of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100408 Complete duplication of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100407 Complete duplication of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100409 Complete duplication of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100410 Complete duplication of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100411 Complete duplication of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100412 Complete duplication of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100413 Complete duplication of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0005643 Short 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0011917 Short 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100934 Sclerosis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100933 Sclerosis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100932 Sclerosis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100931 Sclerosis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100938 Sclerosis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100937 Sclerosis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100936 Sclerosis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100935 Sclerosis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100940 Sclerosis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100941 Sclerosis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0100942 Sclerosis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0008093 Short 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010715 2-5 toe syndactyly 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010427 Partial duplication of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010426 Complete duplication of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010423 Partial duplication of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010371 Aplasia/Hypoplasia of the phalanges of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010374 Curved 4th toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010366 Triangular shaped phalanges of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010362 Curved 3rd toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010359 Aplasia/Hypoplasia of the phalanges of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010383 Aplasia/Hypoplasia of the phalanges of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010386 Curved 5th toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010350 Curved 2nd toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010347 Aplasia/Hypoplasia of the phalanges of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.500000 1.391432 +HP:0010055 Broad hallux 0.000000 HP:0010434 Aplasia of the middle phalanx of the 2nd toe 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.348837 1.380881 +HP:0010055 Broad hallux 0.000000 HP:0100077 Absent epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100072 Ivory epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100073 Pseudoepiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100071 Irregular epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100083 Ivory epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100084 Pseudoepiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100082 Irregular epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100051 Pseudoepiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100050 Ivory epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100055 Absent epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100060 Irregular epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100062 Pseudoepiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100061 Ivory epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100066 Absent epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100049 Irregular epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0100044 Absent epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010415 Bullet-shaped distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010420 Triangular shaped distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010422 Complete duplication of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010425 Partial duplication of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010424 Complete duplication of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010402 Triangular shaped proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010406 Bullet-shaped middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010411 Triangular shaped middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010397 Bullet-shaped proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.482759 1.367232 +HP:0010055 Broad hallux 0.000000 HP:0010103 Short distal phalanx of hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.340909 1.365099 +HP:0010055 Broad hallux 0.000000 HP:0010082 Symphalangism affecting the distal phalanx of the hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.333333 1.349846 +HP:0010055 Broad hallux 0.000000 HP:0100388 Aplasia of the proximal phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100387 Aplasia of the middle phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100076 Triangular epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100078 Bracket epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100079 Cone-shaped epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100074 Small epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100087 Triangular epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100085 Small epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100080 Enlarged epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100052 Small epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100054 Triangular epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100057 Cone-shaped epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100056 Bracket epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100058 Enlarged epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100063 Small epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100068 Cone-shaped epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100067 Bracket epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100065 Triangular epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100069 Enlarged epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100047 Enlarged epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100046 Cone-shaped epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100045 Bracket epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0100943 Sclerosis of the proximal phalanx of the hallux 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0010208 Patchy sclerosis of proximal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0010190 Patchy sclerosis of distal toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0010199 Patchy sclerosis of middle toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.466667 1.344252 +HP:0010055 Broad hallux 0.000000 HP:0010107 Short proximal phalanx of hallux 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.326087 1.335094 +HP:0010055 Broad hallux 0.000000 HP:0001839 Split foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.631579 1.330848 +HP:0010055 Broad hallux 0.000000 HP:0005830 Flexion contracture of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100229 Irregular epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100230 Ivory epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100202 Absent epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100218 Irregular epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100219 Ivory epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100224 Absent epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100207 Irregular epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100208 Ivory epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100213 Absent epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100196 Irregular epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100191 Absent epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100197 Ivory epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100157 Absent epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100152 Ivory epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100151 Irregular epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100169 Absent epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100164 Pseudoepiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100163 Ivory epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100162 Irregular epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100175 Ivory epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100174 Irregular epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100186 Ivory epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100180 Absent epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100185 Irregular epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100146 Absent epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100140 Irregular epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100141 Ivory epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100128 Ivory epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100135 Absent epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100117 Ivory epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100122 Absent epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100127 Irregular epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100106 Ivory epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100111 Absent epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100116 Irregular epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100105 Irregular epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100100 Absent epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100939 Sclerosis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0010417 Osteolytic defects of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0010408 Osteolytic defects of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0010376 Patchy sclerosis of 4th toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0010364 Patchy sclerosis of 3rd toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0010399 Osteolytic defects of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0010388 Patchy sclerosis of 5th toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0010352 Patchy sclerosis of 2nd toe phalanx 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0010179 Symphalangism affecting the phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0005035 Shortening of all phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.451613 1.322392 +HP:0010055 Broad hallux 0.000000 HP:0100488 Synostosis of the proximal phalanx of the hallux with the 1st metatarsal 0.000000 HP:0001844 Abnormality of the hallux 5.466258 0.319149 1.320814 +HP:0010055 Broad hallux 0.000000 HP:0100444 Curved middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100443 Curved middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100446 Curved proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100445 Curved middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100451 Curved distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100450 Curved distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100449 Curved distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100447 Curved proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100448 Curved proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100227 Enlarged epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100232 Small epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100234 Triangular epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100201 Triangular epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100204 Cone-shaped epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100203 Bracket epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100216 Enlarged epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100223 Triangular epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100226 Cone-shaped epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100225 Bracket epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100221 Small epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100205 Enlarged epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100215 Cone-shaped epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100214 Bracket epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100212 Triangular epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100210 Small epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100193 Cone-shaped epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100194 Enlarged epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100190 Triangular epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100192 Bracket epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100199 Small epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100158 Bracket epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100159 Cone-shaped epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100154 Small epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100156 Triangular epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100167 Triangular epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100165 Small epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100160 Enlarged epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100177 Small epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100179 Triangular epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100170 Bracket epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100172 Enlarged epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100171 Cone-shaped epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100188 Small epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100181 Bracket epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100183 Enlarged epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100182 Cone-shaped epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100147 Bracket epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100148 Cone-shaped epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100149 Enlarged epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100143 Small epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100145 Triangular epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100137 Cone-shaped epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100138 Enlarged epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100136 Bracket epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100132 Triangular epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100130 Small epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100119 Small epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100121 Triangular epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100123 Bracket epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100124 Cone-shaped epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100125 Enlarged epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100108 Small epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100112 Bracket epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100110 Triangular epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100113 Cone-shaped epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100114 Enlarged epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100103 Enlarged epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100102 Cone-shaped epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0100101 Bracket epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0010416 Curved distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0010407 Curved middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0010398 Curved proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0010171 Epiphyseal stippling of toe phalanges 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0010174 Broad phalanx of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0010166 Fragmentation of the epiphyses of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.437500 1.301566 +HP:0010055 Broad hallux 0.000000 HP:0001859 Distal symphalangism (feet) 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0100237 Proximal symphalangism (feet) 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0011928 Short proximal phalanx of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0003795 Short middle phalanx of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0010333 Flexion contracture of 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0010327 Flexion contracture of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0010345 Flexion contracture of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0010339 Flexion contracture of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0010209 Symphalangism affecting the proximal phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0010200 Symphalangism affecting the middle phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0010191 Symphalangism affecting the distal phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.424242 1.281693 +HP:0010055 Broad hallux 0.000000 HP:0008119 Deformed tarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.571429 1.265889 +HP:0010055 Broad hallux 0.000000 HP:0004679 Large tarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.571429 1.265889 +HP:0010055 Broad hallux 0.000000 HP:0001836 Camptodactyly of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0006239 Shortening of all middle phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0010377 Symphalangism affecting the phalanges of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0010365 Symphalangism affecting the phalanges of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0010389 Symphalangism affecting the phalanges of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0010353 Symphalangism affecting the phalanges of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0010204 Broad proximal phalanx of toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0010195 Broad middle phalanges of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0010186 Broad distal phalanx of the toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.411765 1.262705 +HP:0010055 Broad hallux 0.000000 HP:0100470 Symphalangism affecting the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100471 Symphalangism affecting the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100474 Symphalangism affecting the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100475 Symphalangism affecting the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100472 Symphalangism affecting the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100473 Symphalangism affecting the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100359 Contracture of the metatarsophalangeal joint of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100357 Contracture of the metatarsophalangeal joint of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100358 Contracture of the metatarsophalangeal joint of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100356 Contracture of the metatarsophalangeal joint of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100231 Pseudoepiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100220 Pseudoepiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100209 Pseudoepiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100198 Pseudoepiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100153 Pseudoepiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100176 Pseudoepiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100187 Pseudoepiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100142 Pseudoepiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100129 Pseudoepiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100118 Pseudoepiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100107 Pseudoepiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100075 Stippling of the epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100070 Fragmentation of the epiphyses of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100086 Stippling of the epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100081 Fragmentation of the epiphyses of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100053 Stippling of the epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100059 Fragmentation of the epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100064 Stippling of the epiphyses of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0100048 Fragmentation of the epiphyses of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0010372 Broad phalanges of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0010360 Broad phalanges of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0010384 Broad phalanges of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0010348 Broad phalanges of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.400000 1.244535 +HP:0010055 Broad hallux 0.000000 HP:0010631 Abnormality of the epiphyses of the feet 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.545455 1.236784 +HP:0010055 Broad hallux 0.000000 HP:0100466 Patchy sclerosis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100465 Patchy sclerosis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100468 Patchy sclerosis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100467 Patchy sclerosis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100462 Patchy sclerosis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100461 Patchy sclerosis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100464 Patchy sclerosis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100463 Patchy sclerosis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100469 Patchy sclerosis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.388889 1.227128 +HP:0010055 Broad hallux 0.000000 HP:0100353 Contracture of the distal interphalangeal joint of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100354 Contracture of the distal interphalangeal joint of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100351 Contractures of the proximal interphalangeal joint of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100352 Contracture of the distal interphalangeal joint of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100355 Contractures of the distal interphalangeal joint of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100350 Contracture of the proximal interphalangeal joint of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100349 Contracture of the proximal interphalangeal joint of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100348 Contracture of the proximal interphalangeal joint of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100228 Fragmentation of the epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100233 Stippling of the epiphysis of the proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100200 Stippling of the epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100217 Fragmentation of the epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100222 Stippling of the epiphysis of the middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100206 Fragmentation of the epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100211 Stippling of the epiphysis of the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100195 Fragmentation of the epiphysis of the proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100155 Stippling of the epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100150 Fragmentation of the epiphysis of the middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100166 Stippling of the epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100161 Fragmentation of the epiphysis of the proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100178 Stippling of the epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100173 Fragmentation of the epiphysis of the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100189 Stippling of the epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100184 Fragmentation of the epiphysis of the middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100139 Fragmentation of the epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100144 Stippling of the epiphysis of the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100131 Stippling of the epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100120 Stippling of the epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100126 Fragmentation of the epiphysis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100109 Stippling of the epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100115 Fragmentation of the epiphysis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0100104 Fragmentation of the epiphysis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0010418 Patchy sclerosis of the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0010400 Patchy sclerosis of the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0010409 Patchy sclerosis of the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.378378 1.210431 +HP:0010055 Broad hallux 0.000000 HP:0001848 Calcaneovalgus deformity 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.521739 1.209598 +HP:0010055 Broad hallux 0.000000 HP:0001783 Broad metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.521739 1.209598 +HP:0010055 Broad hallux 0.000000 HP:0006494 Aplasia/Hypoplasia involving bones of the feet 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.521739 1.209598 +HP:0010055 Broad hallux 0.000000 HP:0010069 Bullet-shaped 1st metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.521739 1.209598 +HP:0010055 Broad hallux 0.000000 HP:0100478 Symphalangism affecting the distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.368421 1.194398 +HP:0010055 Broad hallux 0.000000 HP:0100476 Symphalangism affecting the distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.368421 1.194398 +HP:0010055 Broad hallux 0.000000 HP:0100477 Symphalangism affecting the distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.368421 1.194398 +HP:0010055 Broad hallux 0.000000 HP:0010401 Symphalangism affecting the proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.368421 1.194398 +HP:0010055 Broad hallux 0.000000 HP:0010410 Symphalangism affecting the middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.368421 1.194398 +HP:0010055 Broad hallux 0.000000 HP:0001773 Short foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.500000 1.184131 +HP:0010055 Broad hallux 0.000000 HP:0030032 Partial absence of foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.500000 1.184131 +HP:0010055 Broad hallux 0.000000 HP:0011301 Absent foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.500000 1.184131 +HP:0010055 Broad hallux 0.000000 HP:0100431 Broad distal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0100430 Broad proximal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0100433 Broad distal phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0100432 Broad distal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0100427 Broad middle phalanx of the 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0100428 Broad proximal phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0100425 Broad middle phalanx of the 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0100426 Broad middle phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0100429 Broad proximal phalanx of the 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0010414 Broad distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0010405 Broad middle phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0010396 Broad proximal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.358974 1.178986 +HP:0010055 Broad hallux 0.000000 HP:0001964 Aplasia/Hypoplasia of metatarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.480000 1.160206 +HP:0010055 Broad hallux 0.000000 HP:0009820 Lower limb peromelia 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.480000 1.160206 +HP:0010055 Broad hallux 0.000000 HP:0008363 Aplasia/Hypoplasia of the tarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.480000 1.160206 +HP:0010055 Broad hallux 0.000000 HP:0010630 Abnormality of metatarsal epiphysis 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.480000 1.160206 +HP:0010055 Broad hallux 0.000000 HP:0010068 Broad first metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.480000 1.160206 +HP:0010055 Broad hallux 0.000000 HP:0001832 Abnormality of the metatarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.473684 1.152548 +HP:0010055 Broad hallux 0.000000 HP:0001850 Abnormality of the tarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.473684 1.152548 +HP:0010055 Broad hallux 0.000000 HP:0009136 Duplication involving bones of the feet 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.473684 1.152548 +HP:0010055 Broad hallux 0.000000 HP:0010744 Absent metatarsal bone 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.461538 1.137675 +HP:0010055 Broad hallux 0.000000 HP:0010509 Aplasia of the tarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.461538 1.137675 +HP:0010055 Broad hallux 0.000000 HP:0010070 Curved 1st metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.461538 1.137675 +HP:0010055 Broad hallux 0.000000 HP:0009132 Abnormal tarsal bone mineral density 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.454545 1.129024 +HP:0010055 Broad hallux 0.000000 HP:0008074 Metatarsal periosteal thickening 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.454545 1.129024 +HP:0010055 Broad hallux 0.000000 HP:0001840 Metatarsus adductus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0100339 Abnormality of the os naviculare pedis 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0040034 Abnormality of the second metatarsal bone 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0040035 Abnormality of the fourth metatarsal bone 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0008102 Expanded metatarsals with widened medullary cavities 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0008133 Distal tapering of metatarsals 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0008125 Second metatarsal posteriorly placed 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0008144 Flattening of the talar dome 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0008089 Abnormality of the fifth metatarsal bone 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0008078 Thin metatarsal cortices 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0008364 Abnormality of the calcaneus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0008365 Abnormality of the talus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0010672 Abnormality of the third metatarsal bone 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0010567 Y-shaped metatarsals 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0010508 Metatarsus valgus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0010054 Abnormality of the first metatarsal bone 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0005194 Flattened metatarsal heads 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0005109 Abnormality of the Achilles tendon 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.450000 1.123365 +HP:0010055 Broad hallux 0.000000 HP:0100480 Proximal/middle symphalangism of 3rd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.325581 1.122811 +HP:0010055 Broad hallux 0.000000 HP:0100481 Proximal/middle symphalangism of 4th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.325581 1.122811 +HP:0010055 Broad hallux 0.000000 HP:0100484 Symphalangism of the proximal phalanx of the 3rd toe with the 3rd metatarsal 0.000000 HP:0001780 Abnormality of toe 3.872167 0.325581 1.122811 +HP:0010055 Broad hallux 0.000000 HP:0100486 Symphalangism of the proximal phalanx of the 5th toe with the 5th metatarsal 0.000000 HP:0001780 Abnormality of toe 3.872167 0.325581 1.122811 +HP:0010055 Broad hallux 0.000000 HP:0010419 Symphalangism affecting the distal phalanx of the 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.325581 1.122811 +HP:0010055 Broad hallux 0.000000 HP:0040033 Aplasia/Hypoplasia of the fifth metatarsal bone 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.444444 1.116408 +HP:0010055 Broad hallux 0.000000 HP:0010067 Aplasia/hypoplasia of the 1st metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.444444 1.116408 +HP:0010055 Broad hallux 0.000000 HP:0004688 Irregular tarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.434783 1.104208 +HP:0010055 Broad hallux 0.000000 HP:0001838 Rocker bottom foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0009134 Osteolysis involving bones of the feet 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0001775 Tarsal osteovalgus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0001449 Duplication of metatarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0100235 Synostosis involving bones of the toes 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0008117 Shortening of the talar neck 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0008138 Equinus calcaneus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0008127 Bipartite calcaneus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0008090 Ankylosis of feet small joints 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0004690 Thickened Achilles tendon 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0012789 Hypoplasia of the calcaneus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0012428 Prominent calcaneus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.428571 1.096291 +HP:0010055 Broad hallux 0.000000 HP:0100482 Proximal/middle symphalangism of 5th toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.304348 1.085581 +HP:0010055 Broad hallux 0.000000 HP:0100483 Symphalangism of the proximal phalanx of the 2nd toe with the 2nd metatarsal 0.000000 HP:0001780 Abnormality of toe 3.872167 0.304348 1.085581 +HP:0010055 Broad hallux 0.000000 HP:0100485 Symphalangism of the proximal phalanx of the 4th toe with the 4th metatarsal 0.000000 HP:0001780 Abnormality of toe 3.872167 0.304348 1.085581 +HP:0010055 Broad hallux 0.000000 HP:0008083 2nd-5th toe middle phalangeal hypoplasia 0.000000 HP:0001780 Abnormality of toe 3.872167 0.304348 1.085581 +HP:0010055 Broad hallux 0.000000 HP:0009140 Synostosis involving bones of the feet 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.416667 1.080959 +HP:0010055 Broad hallux 0.000000 HP:0001473 Metatarsal osteolysis 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.416667 1.080959 +HP:0010055 Broad hallux 0.000000 HP:0006234 Osteolysis involving tarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.416667 1.080959 +HP:0010055 Broad hallux 0.000000 HP:0004699 Osteoporotic metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.416667 1.080959 +HP:0010055 Broad hallux 0.000000 HP:0008079 Absent fifth metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.413793 1.077224 +HP:0010055 Broad hallux 0.000000 HP:0008368 Tarsal synostosis 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.413793 1.077224 +HP:0010055 Broad hallux 0.000000 HP:0010743 Short metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.413793 1.077224 +HP:0010055 Broad hallux 0.000000 HP:0010104 Absent first metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.413793 1.077224 +HP:0010055 Broad hallux 0.000000 HP:0001760 Abnormality of the foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.411765 1.074581 +HP:0010055 Broad hallux 0.000000 HP:0010675 Abnormal foot bone ossification 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.409091 1.071086 +HP:0010055 Broad hallux 0.000000 HP:0005802 Coalescence of tarsal bones 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0001440 Metatarsal synostosis 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0005682 Talocalcaneal synostosis 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0008122 Calcaneonavicular fusion 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0008095 Osteolysis of talus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0008097 Partial fusion of tarsals 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0008076 Osteoporotic tarsals 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0008369 Abnormal tarsal ossification 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0008371 Abnormal metatarsal ossification 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.400000 1.059119 +HP:0010055 Broad hallux 0.000000 HP:0008114 Metatarsal diaphyseal endosteal sclerosis 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.392857 1.049619 +HP:0010055 Broad hallux 0.000000 HP:0008124 Talipes calcaneovarus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.391304 1.047543 +HP:0010055 Broad hallux 0.000000 HP:0010075 Duplication of the 1st metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.391304 1.047543 +HP:0010055 Broad hallux 0.000000 HP:0001833 Long foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0001786 Narrow foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0001769 Broad foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0001761 Pes cavus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0001763 Pes planus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0005656 Positional foot deformity 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0008110 Equinovarus deformity 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0008132 Medial rotation of the medial malleolus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0008081 Valgus foot deformity 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0008082 Medial deviation of the foot 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0010507 Foot asymmetry 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0010219 Structural foot deformity 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.388889 1.044305 +HP:0010055 Broad hallux 0.000000 HP:0011845 Short second metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.387097 1.041896 +HP:0010055 Broad hallux 0.000000 HP:0008131 Tarsal stippling 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.387097 1.041896 +HP:0010055 Broad hallux 0.000000 HP:0004704 Short fifth metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.387097 1.041896 +HP:0010055 Broad hallux 0.000000 HP:0004686 Short third metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.387097 1.041896 +HP:0010055 Broad hallux 0.000000 HP:0004689 Short fourth metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.387097 1.041896 +HP:0010055 Broad hallux 0.000000 HP:0010105 Short first metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.387097 1.041896 +HP:0010055 Broad hallux 0.000000 HP:0001782 Bulbous tips of toes 0.000000 HP:0001780 Abnormality of toe 3.872167 0.280000 1.041253 +HP:0010055 Broad hallux 0.000000 HP:0008108 Advanced tarsal ossification 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.384615 1.038551 +HP:0010055 Broad hallux 0.000000 HP:0008103 Delayed tarsal ossification 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.384615 1.038551 +HP:0010055 Broad hallux 0.000000 HP:0008134 Irregular tarsal ossification 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.384615 1.038551 +HP:0010055 Broad hallux 0.000000 HP:0008087 Nonossified fifth metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.384615 1.038551 +HP:0010055 Broad hallux 0.000000 HP:0100489 Proximal/middle symphalangism of 2nd toe 0.000000 HP:0001780 Abnormality of toe 3.872167 0.274510 1.030994 +HP:0010055 Broad hallux 0.000000 HP:0010888 Morbus Koehler 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.375000 1.025487 +HP:0010055 Broad hallux 0.000000 HP:0010073 Synostosis involving the 1st metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.375000 1.025487 +HP:0010055 Broad hallux 0.000000 HP:0010098 Complete duplication of the 1st metatarsal 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.375000 1.025487 +HP:0010055 Broad hallux 0.000000 HP:0001883 Talipes 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.368421 1.016452 +HP:0010055 Broad hallux 0.000000 HP:0001868 Autoamputation (feet) 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.368421 1.016452 +HP:0010055 Broad hallux 0.000000 HP:0008075 Progressive pes cavus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.368421 1.016452 +HP:0010055 Broad hallux 0.000000 HP:0011836 Delayed talus ossification 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.357143 1.000773 +HP:0010055 Broad hallux 0.000000 HP:0008142 Delayed calcaneal ossification 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.357143 1.000773 +HP:0010055 Broad hallux 0.000000 HP:0100329 Tarsometatarsal synostosis 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.352941 0.994868 +HP:0010055 Broad hallux 0.000000 HP:0001884 Talipes calcaneovalgus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.350000 0.990715 +HP:0010055 Broad hallux 0.000000 HP:0001772 Talipes equinovalgus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.350000 0.990715 +HP:0010055 Broad hallux 0.000000 HP:0001762 Talipes equinovarus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.350000 0.990715 +HP:0010055 Broad hallux 0.000000 HP:0100270 Abnormality of dorsoventral patterning of the limbs 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.350000 0.990715 +HP:0010055 Broad hallux 0.000000 HP:0001776 Bilateral talipes equinovarus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.333333 0.966838 +HP:0010055 Broad hallux 0.000000 HP:0005850 Congenital talipes calcaneovalgus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.333333 0.966838 +HP:0010055 Broad hallux 0.000000 HP:0008366 Contractures involving the joints of the feet 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.333333 0.966838 +HP:0010055 Broad hallux 0.000000 HP:0004696 Talipes cavus equinovarus 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.333333 0.966838 +HP:0010055 Broad hallux 0.000000 HP:0001854 Gout (feet) 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.321429 0.949417 +HP:0010055 Broad hallux 0.000000 HP:0005745 Congenital foot contractures 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.321429 0.949417 +HP:0010055 Broad hallux 0.000000 HP:0008112 Plantar flexion contractures 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.321429 0.949417 +HP:0010055 Broad hallux 0.000000 HP:0001771 Achilles tendon contracture 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.310345 0.932904 +HP:0010055 Broad hallux 0.000000 HP:0001862 Acral ulceration and osteomyelitis leading to autoamputation of the digits (feet) 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.291667 0.904395 +HP:0010055 Broad hallux 0.000000 HP:0001886 Osteomyelitis or necrosis, distal, due to sensory neuropathy (feet) 0.000000 HP:0001760 Abnormality of the foot 2.804330 0.291667 0.904395 diff --git a/exomiser-core/src/test/resources/prioritisers/hp-mp-mappings b/exomiser-core/src/test/resources/prioritisers/hp-mp-mappings new file mode 100644 index 000000000..b247eb8f1 --- /dev/null +++ b/exomiser-core/src/test/resources/prioritisers/hp-mp-mappings @@ -0,0 +1,1619 @@ +# Test data for HP-MP mappings +# Contains the top 10 matches for the phenotypes HP:0001156, HP:0001363, HP:0011304, HP:0010055 +# +#queryTerm.getId(), queryTerm.getTerm(), queryTerm.getIc(),matchTerm.getId(), matchTerm.getTerm(), matchTerm.getIc(),lcs.getId(), lcs.getTerm(), lcs.getIc(), match.getSimJ(), match.getScore() +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002544 brachydactyly 0.000000 MP:0002544 brachydactyly 5.137867 1.000000 2.266686 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009001 absent hallux 0.000000 HP:0001991 Aplasia/Hypoplasia of toe 5.029783 0.848485 2.065840 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000561 adactyly 0.000000 HP:0001991 Aplasia/Hypoplasia of toe 5.029783 0.736842 1.925138 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009049 abnormal hallux morphology 0.000000 HP:0001780 Abnormality of toe 4.527664 0.677419 1.751322 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004635 short metatarsal bones 0.000000 HP:0006494 Aplasia/Hypoplasia involving bones of the feet 4.915927 0.594595 1.709674 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002772 brachypodia 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.633333 1.561093 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0020242 enlarged paws 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.633333 1.561093 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005104 abnormal tarsal bone morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.625000 1.550789 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004694 absent patella 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.540541 1.548511 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000576 clubfoot 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.612903 1.535708 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009729 absent tarsus bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.606061 1.527111 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005430 absent fibula 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.512821 1.508283 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005109 abnormal talus morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.588235 1.504486 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009728 abnormal calcaneum morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.588235 1.504486 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009727 abnormal navicular morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.588235 1.504486 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002765 short fibula 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.500000 1.489310 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002764 short tibia 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.500000 1.489310 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004349 absent femur 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.500000 1.489310 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005110 absent talus 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.571429 1.482838 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002110 abnormal digit morphology 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.620690 1.476327 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002728 absent tibia 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.487805 1.471036 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003109 short femur 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.487805 1.471036 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008153 decreased diameter of fibula 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.476190 1.453418 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008156 decreased diameter of tibia 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.476190 1.453418 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000568 ectopic digits 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000565 oligodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000564 syndactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000567 truncation of digits 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000562 polydactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006253 clinodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013149 macrodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003800 monodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005230 ectrodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008152 decreased diameter of femur 0.000000 HP:0006493 Aplasia/hypoplasia involving bones of the lower limbs 4.436089 0.465116 1.436418 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000555 absent carpal bone 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.487179 1.435763 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000571 interdigital webbing 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.580645 1.427909 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004637 metacarpal bone hypoplasia 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.475000 1.417703 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0010772 abnormal pollex morphology 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.562500 1.405421 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006296 arachnodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.562500 1.405421 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004083 polysyndactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.562500 1.405421 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005306 abnormal phalanx morphology 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.562500 1.405421 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000572 abnormal autopod morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.586207 1.402788 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004634 short metacarpal bones 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.463415 1.400307 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003074 absent metacarpal bones 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.463415 1.400307 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003072 abnormal metatarsal bone morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.500000 1.387068 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000413 polyphalangy 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.545455 1.383963 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004509 abnormal pelvic girdle bone morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.516129 1.382550 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009005 abnormal sesamoid bone of gastrocnemius morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.516129 1.382550 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008909 supination 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000578 ulcerated paws 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000573 enlarged hind paws 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004640 decreased metatarsal bone number 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.485714 1.367109 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008829 triphalangia 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.529412 1.363459 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004641 elongated metatarsal bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.472222 1.347988 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004352 absent humerus 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.428571 1.346635 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008730 fused phalanges 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.514286 1.343840 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008919 fused tarsal bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.465116 1.337807 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013076 autopod wound 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.531250 1.335414 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004351 short humerus 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.418605 1.330884 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004507 abnormal ischium morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.470588 1.320146 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004506 abnormal pubis morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.470588 1.320146 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005354 abnormal ilium morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.470588 1.320146 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004691 absent pubis 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.457143 1.301150 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004692 small pubis 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.457143 1.301150 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004689 small ischium 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.457143 1.301150 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004688 absent ilium 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.457143 1.301150 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005353 abnormal patella morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.457143 1.301150 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000553 absent radius 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.400000 1.300973 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008154 decreased diameter of humerus 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.400000 1.300973 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004360 absent ulna 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.400000 1.300973 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013078 autopod open avulsion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.500000 1.295542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013079 autopod open incision 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.500000 1.295542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013077 autopod open abrasion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.500000 1.295542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013080 autopod open laceration 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.500000 1.295542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013082 autopod closed contusion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.500000 1.295542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013081 autopod open puncture 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.500000 1.295542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000547 short limbs 0.000000 HP:0009815 Aplasia/hypoplasia of the extremities 4.050860 0.410256 1.289144 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004690 ischium hypoplasia 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.444444 1.282952 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008905 abnormal femoral fat pad morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.444444 1.282952 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009575 abnormal pubic symphysis morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.444444 1.282952 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000574 abnormal foot pad morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.485714 1.276900 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002543 brachyphalangia 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.461538 1.273061 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000569 abnormal digit pigmentation 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.461538 1.273061 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009744 postaxial polydactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.461538 1.273061 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009743 preaxial polydactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.461538 1.273061 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008736 micromelia 0.000000 HP:0009815 Aplasia/hypoplasia of the extremities 4.050860 0.400000 1.272927 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002187 abnormal fibula morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.432432 1.265496 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000558 abnormal tibia morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.432432 1.265496 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0020221 blanched foot pads 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.472222 1.259041 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004693 pubis hypoplasia 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.421053 1.248733 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000559 abnormal femur morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.421053 1.248733 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003807 camptodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.439024 1.241622 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004627 abnormal trochanter morphology 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.410256 1.232620 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009290 increased femoral fat pad weight 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.410256 1.232620 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009291 decreased femoral fat pad weight 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.410256 1.232620 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000482 long fibula 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.410256 1.232620 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004357 long tibia 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.410256 1.232620 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003857 abnormal hindlimb zeugopod morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.468750 1.226331 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000554 abnormal carpal bone morphology 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.457143 1.217972 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004348 long femur 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.400000 1.217115 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000675 abnormal eccrine gland morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.435897 1.209647 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004642 fused metatarsal bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.377778 1.205677 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008162 increased diameter of tibia 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.390244 1.202180 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003073 abnormal metacarpal bone morphology 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.444444 1.200936 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013456 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.425000 1.194431 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013620 null 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.380952 1.187782 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013621 null 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.380952 1.187782 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008158 increased diameter of femur 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.380952 1.187782 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008159 increased diameter of fibula 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.380952 1.187782 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004358 bowed tibia 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.380952 1.187782 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004508 abnormal pectoral girdle bone morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.468750 1.185877 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003854 abnormal forelimb stylopod morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.468750 1.185877 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004636 decreased metacarpal bone number 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.432432 1.184596 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0010775 abnormal scaphoid morphology 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.432432 1.184596 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013457 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.414634 1.179775 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004340 short scapula 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.410256 1.178285 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004343 small scapula 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.410256 1.178285 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004344 scapular bone hypoplasia 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.410256 1.178285 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013622 null 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.372093 1.173890 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004372 bowed fibula 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.372093 1.173890 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004638 elongated metacarpal bones 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.421053 1.168906 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013458 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000577 absent eccrine glands 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000575 dark foot pads 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002109 abnormal limb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.482759 1.164504 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002115 abnormal limb bone morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.482759 1.164504 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004341 absent scapula 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.400000 1.163463 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003445 sirenomelia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.416667 1.156196 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004323 sternum hypoplasia 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.390244 1.149187 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004321 short sternum 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.390244 1.149187 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013624 null 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.355556 1.147507 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004371 bowed femur 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.355556 1.147507 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004359 short ulna 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.310345 1.145937 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004356 radius hypoplasia 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.310345 1.145937 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004355 short radius 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.310345 1.145937 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000549 absent limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000548 long limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008985 hemimelia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000556 abnormal hindlimb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000550 abnormal forelimb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006279 abnormal limb development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013133 pale limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0020288 supernumerary limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012000 abnormal limb position 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000158 absent sternum 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.380952 1.135423 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004339 absent clavicle 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.380952 1.135423 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000149 abnormal scapula morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008157 decreased diameter of ulna 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.300000 1.126676 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008155 decreased diameter of radius 0.000000 HP:0009825 Aplasia involving bones of the extremities 4.231328 0.300000 1.126676 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004576 abnormal foot plate morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006280 abnormal digit development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011504 abnormal limb long bone morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003855 abnormal forelimb zeugopod morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003856 abnormal hindlimb stylopod morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011685 abnormal limb paddle morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013623 null 0.000000 HP:0040069 Abnormality of lower limb bone 3.703421 0.340426 1.122826 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004337 clavicle hypoplasia 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.372093 1.122143 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004345 abnormal acromion morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004347 abnormal scapular spine morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000133 abnormal long bone metaphysis morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.437500 1.108575 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000557 absent hindlimb 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.437500 1.108575 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000551 absent forelimb 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.437500 1.108575 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013069 limb wound 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.437500 1.108575 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000157 abnormal sternum morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.405405 1.102844 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004342 scapular bone foramen 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.405405 1.102844 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004346 absent acromion 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.405405 1.102844 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005298 abnormal clavicle morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.405405 1.102844 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004338 small clavicle 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004322 abnormal sternebra morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004320 split sternum 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008785 abnormal sternum manubrium morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012512 abnormal sternum body morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012279 wide sternum 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008915 fused carpal bones 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.363636 1.086288 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011505 camptomelia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013074 limb open puncture 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013075 limb closed contusion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013071 limb open avulsion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013070 limb open abrasion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013073 limb open laceration 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013072 limb open incision 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005650 abnormal limb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000159 abnormal xiphoid process morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008148 abnormal rib-sternum attachment 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012513 absent sternum body 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012280 abnormal sternebra size 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012282 abnormal sternebra number 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012285 misaligned sternebrae 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012667 split sternal manubrium 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012668 absent sternal manubrium 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005296 abnormal humerus morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000552 abnormal radius morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011872 absent xiphoid process 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012514 pectus excavatum 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012281 decreased sternebra size 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012283 decreased sternebra number 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012284 increased sternebra number 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005108 abnormal ulna morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0010082 sternebra fusion 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004575 small limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.400000 1.060001 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004574 broad limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.400000 1.060001 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004573 absent limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.400000 1.060001 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013167 abnormal hindlimb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.400000 1.060001 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013164 abnormal forelimb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.400000 1.060001 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004639 fused metacarpal bones 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.340426 1.051047 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008146 asymmetric rib-sternum attachment 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.365854 1.047666 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004350 long humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.365854 1.047666 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004353 abnormal deltoid tuberosity morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.365854 1.047666 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011261 abnormal limb mesenchyme morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.388889 1.045175 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012528 abnormal zone of polarizing activity morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.388889 1.045175 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004680 small xiphoid process 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.357143 1.035119 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004679 xiphoid process foramen 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.357143 1.035119 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008951 long radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.357143 1.035119 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004370 long ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.357143 1.035119 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004354 absent deltoid tuberosity 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.357143 1.035119 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013166 small forelimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.378378 1.030954 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013169 small hindlimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.378378 1.030954 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013168 absent hindlimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.378378 1.030954 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013165 absent forelimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.378378 1.030954 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012531 delayed limb development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.378378 1.030954 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004678 split xiphoid process 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.348837 1.023012 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008160 increased diameter of humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.348837 1.023012 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009874 abnormal interdigital cell death 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008277 abnormal sternum ossification 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008163 increased diameter of ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008161 increased diameter of radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011530 fused radius and ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004373 bowed humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004673 splayed ribs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.358974 1.004171 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0001676 abnormal apical ectodermal ridge morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.358974 1.004171 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009875 absent interdigital cell death 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.358974 1.004171 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008278 failure of sternum ossification 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.333333 1.000020 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004704 short vertebral column 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.294118 0.997661 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0001677 absent apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.350000 0.991540 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0001678 thick apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.350000 0.991540 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0001679 thin apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.350000 0.991540 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000151 absent ribs 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.289474 0.989754 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003345 decreased rib number 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.289474 0.989754 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004672 short ribs 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.282051 0.976982 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000152 absent proximal rib 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.282051 0.976982 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004361 bowed ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.312500 0.968265 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009250 abnormal appendicular skeleton morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.344828 0.966087 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004374 bowed radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.306122 0.958334 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000138 absent vertebrae 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.270270 0.956361 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003723 abnormal long bone morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.333333 0.949849 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004695 increased length of long bones 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004686 decreased length of long bones 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004214 abnormal long bone diaphysis morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008386 absent styloid process 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.283019 0.921461 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004667 vertebral body hypoplasia 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.250000 0.919798 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008150 decreased diameter of long bones 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.312500 0.919688 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008151 increased diameter of long bones 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.312500 0.919688 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000583 long toenails 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.216216 0.912130 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000131 abnormal long bone epiphysis morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.303030 0.905646 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013619 null 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.303030 0.905646 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008920 absent cervical axis 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.238095 0.897631 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011576 absent cervical atlas 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.238095 0.897631 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000150 abnormal rib morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.294118 0.892228 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004674 thin ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004677 truncated ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000153 rib bifurcation 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000132 thickened long bone epiphysis 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008910 thin long bone epiphysis 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008922 abnormal cervical rib 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002759 abnormal caudal vertebrae morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.294118 0.874935 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004671 long ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.277778 0.867090 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004676 wide ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.277778 0.867090 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002823 abnormal rib development 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.277778 0.867090 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000154 rib fusion 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.277778 0.867090 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000480 increased rib number 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.277778 0.867090 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003055 abnormal long bone epiphyseal plate morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.277778 0.867090 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004652 small caudal vertebrae 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.285714 0.862345 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004653 absent caudal vertebrae 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.285714 0.862345 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013612 null 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.285714 0.862345 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006398 increased long bone epiphyseal plate size 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.270270 0.855292 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006397 disorganized long bone epiphyseal plate 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.270270 0.855292 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006399 abnormal long bone epiphyseal ossification zone morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.270270 0.855292 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006396 decreased long bone epiphyseal plate size 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.270270 0.855292 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004614 caudal vertebral transformation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.277778 0.850284 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002639 micrognathia 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.212766 0.848542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004592 small mandible 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.212766 0.848542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000460 mandible hypoplasia 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.212766 0.848542 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000165 abnormal long bone hypertrophic chondrocyte zone 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.263158 0.843963 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003662 abnormal long bone epiphyseal plate proliferative zone 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.263158 0.843963 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004540 small maxilla 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.208333 0.839657 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000457 maxilla hypoplasia 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.208333 0.839657 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000087 absent mandible 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.208333 0.839657 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000088 short mandible 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.208333 0.839657 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003408 increased width of hypertrophic chondrocyte zone 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.256410 0.833073 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003409 decreased width of hypertrophic chondrocyte zone 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.256410 0.833073 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000097 short maxilla 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.204082 0.831045 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0008833 caudal hemivertebra 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.263158 0.827605 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0001539 decreased caudal vertebrae number 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.263158 0.827605 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0010102 increased caudal vertebrae number 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.256410 0.816926 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004871 premaxilla hypoplasia 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.192308 0.806716 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004675 rib fractures 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.238095 0.802769 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004161 cervical aortic arch 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.206897 0.787854 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002576 abnormal enamel morphology 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.181818 0.784406 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002648 delaminated enamel 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.177778 0.775642 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002577 reduced enamel thickness 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.177778 0.775642 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003404 absent enamel 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.177778 0.775642 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003082 abnormal gastrocnemius morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.184211 0.768766 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003081 abnormal soleus morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.184211 0.768766 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002649 abnormal enamel rod pattern 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.384114 0.173913 0.767165 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013188 abnormal gastrocnemius weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.175000 0.749300 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0020165 abnormal soleus weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.175000 0.749300 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0004619 caudal vertebral fusion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.212766 0.744160 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009421 increased gastrocnemius weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.166667 0.731242 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009426 decreased soleus weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.166667 0.731242 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009425 increased soleus weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.166667 0.731242 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009422 decreased gastrocnemius weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.166667 0.731242 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003456 absent tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.193548 0.709757 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003201 extremity edema 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.171429 0.667969 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006284 absent hypaxial muscle 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.171429 0.665290 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012063 absent tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.166667 0.658627 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013178 tail necrosis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.162162 0.649665 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005174 abnormal tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.150000 0.624828 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011276 increased tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.142857 0.609770 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011277 decreased tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.142857 0.609770 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005175 non-pigmented tail tip 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.142857 0.609770 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0005371 limbs/digits/tail phenotype 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.137931 0.599164 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002111 abnormal tail morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.133333 0.589094 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0009434 paraparesis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.132075 0.586308 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002632 vestigial tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000589 thin tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000588 thick tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000585 kinked tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0006281 abnormal tail development 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013179 wavy tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013177 abnormal tail tip morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013176 abnormal tail position or orientation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013175 bifurcated tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013113 greasy tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0011999 abnormal tail length 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0010233 hairless tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003051 curly tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002758 long tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.125000 0.570388 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0000592 short tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.125000 0.570388 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013083 tail wound 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.121212 0.561679 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012053 limb hypertonicity 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.117647 0.551138 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0002861 abnormal tail bud morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.114286 0.545395 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013087 tail open laceration 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.114286 0.545395 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013088 tail open puncture 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.114286 0.545395 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013085 tail open avulsion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.114286 0.545395 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013086 tail open incision 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.114286 0.545395 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013089 tail closed contusion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.114286 0.545395 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013084 tail open abrasion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.114286 0.545395 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0003401 enlarged tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.111111 0.537767 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012277 increased tail bud apoptosis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.111111 0.537767 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012713 abnormal ventral ectodermal ridge morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.111111 0.537767 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012062 small tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.111111 0.537767 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0013180 truncated tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.108108 0.530450 +HP:0001156 Brachydactyly syndrome 0.000000 MP:0012714 decreased ventral ectodermal ridge size 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.108108 0.530450 +HP:0001363 Craniosynostosis 0.000000 MP:0000081 premature suture closure 0.000000 MP:0000081 premature suture closure 7.243785 1.000000 2.691428 +HP:0001363 Craniosynostosis 0.000000 MP:0000105 impaired ossification of basisphenoid bone 0.000000 MP:0008273 abnormal intramembranous bone ossification 6.925322 0.631579 2.091384 +HP:0001363 Craniosynostosis 0.000000 MP:0002835 abnormal cranial suture morphology 0.000000 MP:0002835 abnormal cranial suture morphology 6.070650 0.687500 2.042932 +HP:0001363 Craniosynostosis 0.000000 MP:0003840 abnormal coronal suture morphology 0.000000 MP:0002835 abnormal cranial suture morphology 6.070650 0.666667 2.011740 +HP:0001363 Craniosynostosis 0.000000 MP:0003841 abnormal lambdoidal suture morphology 0.000000 MP:0002835 abnormal cranial suture morphology 6.070650 0.666667 2.011740 +HP:0001363 Craniosynostosis 0.000000 MP:0003844 abnormal squamo-parietal suture morphology 0.000000 MP:0002835 abnormal cranial suture morphology 6.070650 0.666667 2.011740 +HP:0001363 Craniosynostosis 0.000000 MP:0003843 abnormal sagittal suture morphology 0.000000 MP:0002835 abnormal cranial suture morphology 6.070650 0.666667 2.011740 +HP:0001363 Craniosynostosis 0.000000 MP:0010043 abnormal frontonasal suture morphology 0.000000 MP:0002835 abnormal cranial suture morphology 6.070650 0.666667 2.011740 +HP:0001363 Craniosynostosis 0.000000 MP:0003418 premature intramembranous bone ossification 0.000000 MP:0003418 premature intramembranous bone ossification 7.228785 0.531250 1.959666 +HP:0001363 Craniosynostosis 0.000000 MP:0003842 abnormal metopic suture morphology 0.000000 MP:0002835 abnormal cranial suture morphology 6.070650 0.628571 1.953417 +HP:0001363 Craniosynostosis 0.000000 MP:0003416 premature bone ossification 0.000000 MP:0003416 premature bone ossification 7.027804 0.468750 1.815016 +HP:0001363 Craniosynostosis 0.000000 MP:0008273 abnormal intramembranous bone ossification 0.000000 MP:0008273 abnormal intramembranous bone ossification 6.925322 0.468750 1.801734 +HP:0001363 Craniosynostosis 0.000000 MP:0000084 abnormal fontanelle morphology 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 5.593630 0.555556 1.762831 +HP:0001363 Craniosynostosis 0.000000 MP:0003417 premature endochondral bone ossification 0.000000 MP:0003416 premature bone ossification 7.027804 0.441176 1.760824 +HP:0001363 Craniosynostosis 0.000000 MP:0008276 failure of intramembranous bone ossification 0.000000 MP:0008273 abnormal intramembranous bone ossification 6.925322 0.441176 1.747938 +HP:0001363 Craniosynostosis 0.000000 MP:0003420 delayed intramembranous bone ossification 0.000000 MP:0008273 abnormal intramembranous bone ossification 6.925322 0.441176 1.747938 +HP:0001363 Craniosynostosis 0.000000 MP:0010743 delayed suture closure 0.000000 MP:0008273 abnormal intramembranous bone ossification 6.925322 0.428571 1.722787 +HP:0001363 Craniosynostosis 0.000000 MP:0000083 ectopic cranial bone growth 0.000000 MP:0008271 abnormal bone ossification 4.729874 0.621622 1.714699 +HP:0001363 Craniosynostosis 0.000000 MP:0000085 large anterior fontanelle 0.000000 HP:0000235 Abnormality of the fontanelles or cranial sutures 5.593630 0.512821 1.693673 +HP:0001363 Craniosynostosis 0.000000 MP:0000082 overlapping parietal bones 0.000000 HP:0002648 Abnormality of calvarial morphology 4.657019 0.583333 1.648209 +HP:0001363 Craniosynostosis 0.000000 MP:0000109 abnormal parietal bone morphology 0.000000 HP:0002648 Abnormality of calvarial morphology 4.657019 0.571429 1.631304 +HP:0001363 Craniosynostosis 0.000000 MP:0004282 retrognathia 0.000000 MP:0008271 abnormal bone ossification 4.729874 0.560976 1.628909 +HP:0001363 Craniosynostosis 0.000000 MP:0004418 small parietal bone 0.000000 HP:0002648 Abnormality of calvarial morphology 4.657019 0.555556 1.608488 +HP:0001363 Craniosynostosis 0.000000 MP:0004421 enlarged parietal bone 0.000000 HP:0002648 Abnormality of calvarial morphology 4.657019 0.555556 1.608488 +HP:0001363 Craniosynostosis 0.000000 MP:0008863 craniofacial asymmetry 0.000000 HP:0002648 Abnormality of calvarial morphology 4.657019 0.540541 1.586602 +HP:0001363 Craniosynostosis 0.000000 MP:0004419 absent parietal bone 0.000000 HP:0002648 Abnormality of calvarial morphology 4.657019 0.540541 1.586602 +HP:0001363 Craniosynostosis 0.000000 MP:0004420 parietal bone hypoplasia 0.000000 HP:0002648 Abnormality of calvarial morphology 4.657019 0.540541 1.586602 +HP:0001363 Craniosynostosis 0.000000 MP:0003737 ossification of pinnae 0.000000 MP:0008271 abnormal bone ossification 4.729874 0.465116 1.483220 +HP:0001363 Craniosynostosis 0.000000 MP:0008271 abnormal bone ossification 0.000000 MP:0008271 abnormal bone ossification 4.729874 0.437500 1.438513 +HP:0001363 Craniosynostosis 0.000000 MP:0000435 shortened head 0.000000 HP:0002648 Abnormality of calvarial morphology 4.657019 0.434783 1.422951 +HP:0001363 Craniosynostosis 0.000000 MP:0002896 abnormal bone mineralization 0.000000 MP:0008271 abnormal bone ossification 4.729874 0.424242 1.416550 +HP:0001363 Craniosynostosis 0.000000 MP:0008274 failure of bone ossification 0.000000 MP:0008271 abnormal bone ossification 4.729874 0.424242 1.416550 +HP:0001363 Craniosynostosis 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neurocranium 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.529412 1.228995 +HP:0001363 Craniosynostosis 0.000000 MP:0010029 abnormal basicranium morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.529412 1.228995 +HP:0001363 Craniosynostosis 0.000000 MP:0005274 abnormal viscerocranium morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.529412 1.228995 +HP:0001363 Craniosynostosis 0.000000 MP:0005352 small cranium 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.529412 1.228995 +HP:0001363 Craniosynostosis 0.000000 MP:0004572 fusion of basioccipital and basisphenoid bone 0.000000 MP:0003795 abnormal bone structure 3.259093 0.463415 1.228947 +HP:0001363 Craniosynostosis 0.000000 MP:0008277 abnormal sternum ossification 0.000000 MP:0008271 abnormal bone ossification 4.729874 0.319149 1.228631 +HP:0001363 Craniosynostosis 0.000000 MP:0002116 abnormal craniofacial bone morphology 0.000000 MP:0002116 abnormal craniofacial bone 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absent craniofacial bones 0.000000 MP:0002116 abnormal craniofacial bone morphology 2.837436 0.515152 1.209012 +HP:0001363 Craniosynostosis 0.000000 MP:0003739 dense middle ear ossicles 0.000000 MP:0003795 abnormal bone structure 3.259093 0.439024 1.196169 +HP:0001363 Craniosynostosis 0.000000 MP:0000120 malocclusion 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0000100 abnormal ethmoidal bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004383 absent interparietal bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004385 interparietal bone hypoplasia 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004449 absent presphenoid bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004441 small occipital bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004458 absent alisphenoid bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004459 small alisphenoid bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004453 abnormal pterygoid bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004450 presphenoid bone hypoplasia 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004451 short presphenoid bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004454 absent pterygoid process 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004422 small temporal bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0004423 abnormal squamosal bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0000080 abnormal exoccipital bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0000078 abnormal supraoccipital bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0000098 abnormal vomer bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0008023 abnormal styloid process morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 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MP:0009822 abnormal subarcuate fossa morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.500000 1.194369 +HP:0001363 Craniosynostosis 0.000000 MP:0010941 abnormal foramen magnum morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.486486 1.178118 +HP:0001363 Craniosynostosis 0.000000 MP:0000106 abnormal basisphenoid bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.486486 1.178118 +HP:0001363 Craniosynostosis 0.000000 MP:0000107 abnormal frontal bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.486486 1.178118 +HP:0001363 Craniosynostosis 0.000000 MP:0000346 broad head 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.486486 1.178118 +HP:0001363 Craniosynostosis 0.000000 MP:0000458 abnormal mandible morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.486486 1.178118 +HP:0001363 Craniosynostosis 0.000000 MP:0008430 short squamosal bone 0.000000 MP:0000438 abnormal cranium 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Craniosynostosis 0.000000 MP:0004899 absent squamosal bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0004596 abnormal mandibular angle morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0004593 long mandible 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0002240 abnormal paranasal sinus morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0000102 abnormal nasal bone morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0000101 absent ethmoidal bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0000455 abnormal maxilla morphology 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0006210 abnormal orbit size 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0006214 asymmetrical orbits 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0008385 absent basisphenoid bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0004377 small frontal bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0004375 enlarged frontal bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0004443 absent supraoccipital bone 0.000000 MP:0000438 abnormal cranium morphology 2.853033 0.473684 1.162513 +HP:0001363 Craniosynostosis 0.000000 MP:0004462 small basisphenoid bone 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0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0011477 abnormal urine nucleoside level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0011467 decreased urine urea nitrogen level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0011466 increased urine urea nitrogen level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0011558 abnormal urine insulin level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0008055 increased urine osmolality 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0011734 abnormal urine ammonia level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0011740 abnormal urine nitrite level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0001760 abnormal urine enzyme level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0020153 abnormal urine albumin level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0009472 increased urine sulfate level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0009809 abnormal urine uric acid level 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0001189 absent skin pigmentation 0.000000 null BFO:0000003 3.178897 0.142857 0.673890 +HP:0001363 Craniosynostosis 0.000000 MP:0004778 increased macrophage derived foam cell number 0.000000 MP:0003795 abnormal bone structure 3.259093 0.138889 0.672794 +HP:0001363 Craniosynostosis 0.000000 MP:0003354 astrocytosis 0.000000 null BFO:0000003 3.178897 0.140000 0.667117 +HP:0001363 Craniosynostosis 0.000000 MP:0002962 increased urine protein level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0002960 decreased urine microalbumin level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0002901 increased urine phosphate level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0002902 decreased urine phosphate level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0011424 decreased urine uric acid level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0011435 increased urine magnesium level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0011436 decreased urine magnesium level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0011568 decreased foot pigmentation 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 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increased urine nitrite level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0011742 decreased urine nitrite level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0001758 abnormal urine glucose level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0005174 abnormal tail pigmentation 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0005540 decreased urine albumin level 0.000000 null BFO:0000003 3.178897 0.139535 0.666008 +HP:0001363 Craniosynostosis 0.000000 MP:0002871 albuminuria 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 +HP:0001363 Craniosynostosis 0.000000 MP:0011562 abnormal urine prostaglandin level 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 +HP:0001363 Craniosynostosis 0.000000 MP:0011560 decreased urine insulin level 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 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urine deoxycorticosterone level 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 +HP:0001363 Craniosynostosis 0.000000 MP:0011538 abnormal urine hormone level 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 +HP:0001363 Craniosynostosis 0.000000 MP:0011533 increased urine major urinary protein level 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 +HP:0001363 Craniosynostosis 0.000000 MP:0003870 decreased urine glucose level 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 +HP:0001363 Craniosynostosis 0.000000 MP:0011770 increased urine selenium level 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 +HP:0001363 Craniosynostosis 0.000000 MP:0001759 increased urine glucose level 0.000000 null BFO:0000003 3.178897 0.136364 0.658397 +HP:0001363 Craniosynostosis 0.000000 MP:0002959 increased urine microalbumin level 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0011276 increased tail pigmentation 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0011277 decreased tail pigmentation 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0006034 myoglobinuria 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0011460 decreased urine chloride ion level 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0011459 increased urine chloride ion level 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0011556 increased urine beta2-microglobulin level 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0011559 increased urine insulin level 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0009386 abnormal dermal melanocyte morphology 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0009388 abnormal epidermal melanocyte morphology 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0005175 non-pigmented tail tip 0.000000 null BFO:0000003 3.178897 0.133333 0.651040 +HP:0001363 Craniosynostosis 0.000000 MP:0001541 abnormal osteoclast physiology 0.000000 MP:0001533 abnormal skeleton physiology 3.141113 0.132353 0.644776 +HP:0001363 Craniosynostosis 0.000000 MP:0004820 abnormal urine potassium level 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0002985 abnormal urine calcium level 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0006274 abnormal urine sodium level 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0011564 decreased urine prostaglandin level 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0011468 abnormal urine amino acid level 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0011542 abnormal urine antidiuretic hormone level 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0011553 increased urine deoxycorticosterone level 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0003311 aminoaciduria 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0009810 increased urine uric acid level 0.000000 null BFO:0000003 3.178897 0.130435 0.643925 +HP:0001363 Craniosynostosis 0.000000 MP:0002986 decreased urine calcium level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0002931 glutaricadicuria 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0006317 decreased urine sodium level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0006316 increased urine sodium level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0011478 abnormal urine catecholamine level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0011469 abnormal urine creatinine level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0011543 increased urine antidiuretic hormone level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0011544 decreased urine antidiuretic hormone level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0011537 uraturia 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0005172 decreased eye pigmentation 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0005441 increased urine calcium level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0005618 decreased urine potassium level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0005619 increased urine potassium level 0.000000 null BFO:0000003 3.178897 0.127660 0.637037 +HP:0001363 Craniosynostosis 0.000000 MP:0011654 increased urine histidine level 0.000000 null BFO:0000003 3.178897 0.125000 0.630367 +HP:0001363 Craniosynostosis 0.000000 MP:0011473 increased urine glycosaminoglycan level 0.000000 null BFO:0000003 3.178897 0.125000 0.630367 +HP:0001363 Craniosynostosis 0.000000 MP:0011471 decreased urine creatinine level 0.000000 null BFO:0000003 3.178897 0.125000 0.630367 +HP:0001363 Craniosynostosis 0.000000 MP:0011470 increased urine creatinine level 0.000000 null BFO:0000003 3.178897 0.125000 0.630367 +HP:0001363 Craniosynostosis 0.000000 MP:0011539 abnormal urine aldosterone level 0.000000 null BFO:0000003 3.178897 0.125000 0.630367 +HP:0001363 Craniosynostosis 0.000000 MP:0011545 abnormal urine progesterone level 0.000000 null BFO:0000003 3.178897 0.125000 0.630367 +HP:0001363 Craniosynostosis 0.000000 MP:0011548 abnormal urine corticosterone level 0.000000 null BFO:0000003 3.178897 0.125000 0.630367 +HP:0001363 Craniosynostosis 0.000000 MP:0008822 decreased blood uric acid level 0.000000 null BFO:0000003 3.178897 0.125000 0.630367 +HP:0001363 Craniosynostosis 0.000000 MP:0013730 null 0.000000 null BFO:0000003 3.178897 0.122449 0.623901 +HP:0001363 Craniosynostosis 0.000000 MP:0011516 aspartylglucosaminuria 0.000000 null BFO:0000003 3.178897 0.122449 0.623901 +HP:0001363 Craniosynostosis 0.000000 MP:0011547 decreased urine progesterone level 0.000000 null BFO:0000003 3.178897 0.122449 0.623901 +HP:0001363 Craniosynostosis 0.000000 MP:0011541 decreased urine aldosterone level 0.000000 null BFO:0000003 3.178897 0.122449 0.623901 +HP:0001363 Craniosynostosis 0.000000 MP:0011550 decreased urine corticosterone level 0.000000 null BFO:0000003 3.178897 0.122449 0.623901 +HP:0001363 Craniosynostosis 0.000000 MP:0011546 increased urine progesterone level 0.000000 null BFO:0000003 3.178897 0.117647 0.611546 +HP:0001363 Craniosynostosis 0.000000 MP:0011549 increased urine corticosterone level 0.000000 null BFO:0000003 3.178897 0.117647 0.611546 +HP:0001363 Craniosynostosis 0.000000 MP:0011540 increased urine aldosterone level 0.000000 null BFO:0000003 3.178897 0.117647 0.611546 +HP:0001363 Craniosynostosis 0.000000 MP:0003978 decreased circulating carnitine level 0.000000 null BFO:0000003 3.178897 0.111111 0.594315 +HP:0001363 Craniosynostosis 0.000000 MP:0011563 increased urine prostaglandin level 0.000000 null BFO:0000003 3.178897 0.109091 0.588888 +HP:0001363 Craniosynostosis 0.000000 MP:0011765 oroticaciduria 0.000000 null BFO:0000003 3.178897 0.109091 0.588888 +HP:0001363 Craniosynostosis 0.000000 MP:0005161 hematuria 0.000000 null BFO:0000003 3.178897 0.093750 0.545914 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5.527664 0.538462 1.725235 +HP:0011304 Broad thumb 0.000000 MP:0009743 preaxial polydactyly 0.000000 HP:0001172 Abnormality of the thumb 5.734074 0.511628 1.712808 +HP:0011304 Broad thumb 0.000000 MP:0008730 fused phalanges 0.000000 MP:0005306 abnormal phalanx morphology 5.527664 0.525000 1.703533 +HP:0011304 Broad thumb 0.000000 MP:0008159 increased diameter of fibula 0.000000 HP:0005622 Broad long bones 7.744176 0.346939 1.639132 +HP:0011304 Broad thumb 0.000000 MP:0009744 postaxial polydactyly 0.000000 HP:0005918 Abnormality of phalanx of finger 4.718975 0.477273 1.500746 +HP:0011304 Broad thumb 0.000000 MP:0004676 wide ribs 0.000000 HP:0005622 Broad long bones 7.744176 0.285714 1.487488 +HP:0011304 Broad thumb 0.000000 MP:0003073 abnormal metacarpal bone morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.500000 1.460049 +HP:0011304 Broad thumb 0.000000 MP:0004634 short metacarpal bones 0.000000 MP:0004686 decreased length of long bones 4.756984 0.446809 1.457896 +HP:0011304 Broad thumb 0.000000 MP:0004636 decreased metacarpal bone number 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.487805 1.442134 +HP:0011304 Broad thumb 0.000000 MP:0004638 elongated metacarpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.476190 1.424862 +HP:0011304 Broad thumb 0.000000 MP:0006296 arachnodactyly 0.000000 HP:0001167 Abnormality of finger 4.084764 0.487179 1.410678 +HP:0011304 Broad thumb 0.000000 MP:0004351 short humerus 0.000000 MP:0004686 decreased length of long bones 4.756984 0.408163 1.393422 +HP:0011304 Broad thumb 0.000000 MP:0004508 abnormal pectoral girdle bone morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.447368 1.381069 +HP:0011304 Broad thumb 0.000000 MP:0005296 abnormal humerus morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.441860 1.372540 +HP:0011304 Broad thumb 0.000000 MP:0004337 clavicle hypoplasia 0.000000 MP:0004686 decreased length of long bones 4.756984 0.395833 1.372215 +HP:0011304 Broad thumb 0.000000 MP:0000554 abnormal carpal bone morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.439024 1.368129 +HP:0011304 Broad thumb 0.000000 MP:0008154 decreased diameter of humerus 0.000000 MP:0004686 decreased length of long bones 4.756984 0.392157 1.365827 +HP:0011304 Broad thumb 0.000000 MP:0000552 abnormal radius morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.431818 1.356854 +HP:0011304 Broad thumb 0.000000 MP:0005108 abnormal ulna morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.431818 1.356854 +HP:0011304 Broad thumb 0.000000 MP:0011504 abnormal limb long bone morphology 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.432432 1.352121 +HP:0011304 Broad thumb 0.000000 MP:0005298 abnormal clavicle morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.428571 1.351743 +HP:0011304 Broad thumb 0.000000 MP:0004637 metacarpal bone hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.425532 1.346941 +HP:0011304 Broad thumb 0.000000 MP:0004350 long humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.422222 1.341693 +HP:0011304 Broad thumb 0.000000 MP:0004353 abnormal deltoid tuberosity morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.422222 1.341693 +HP:0011304 Broad thumb 0.000000 MP:0010775 abnormal scaphoid morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.418605 1.335933 +HP:0011304 Broad thumb 0.000000 MP:0004338 small clavicle 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.418605 1.335933 +HP:0011304 Broad thumb 0.000000 MP:0003074 absent metacarpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.416667 1.332837 +HP:0011304 Broad thumb 0.000000 MP:0000149 abnormal scapula morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.414634 1.329582 +HP:0011304 Broad thumb 0.000000 MP:0008951 long radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.413043 1.327029 +HP:0011304 Broad thumb 0.000000 MP:0004370 long ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.413043 1.327029 +HP:0011304 Broad thumb 0.000000 MP:0004354 absent deltoid tuberosity 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.413043 1.327029 +HP:0011304 Broad thumb 0.000000 MP:0004345 abnormal acromion morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.404762 1.313658 +HP:0011304 Broad thumb 0.000000 MP:0004347 abnormal scapular spine morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.404762 1.313658 +HP:0011304 Broad thumb 0.000000 MP:0008160 increased diameter of humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.404255 1.312836 +HP:0011304 Broad thumb 0.000000 MP:0002110 abnormal digit morphology 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.486486 1.307015 +HP:0011304 Broad thumb 0.000000 MP:0011505 camptomelia 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.400000 1.300428 +HP:0011304 Broad thumb 0.000000 MP:0008163 increased diameter of ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.395833 1.299089 +HP:0011304 Broad thumb 0.000000 MP:0008161 increased diameter of radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.395833 1.299089 +HP:0011304 Broad thumb 0.000000 MP:0011530 fused radius and ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.395833 1.299089 +HP:0011304 Broad thumb 0.000000 MP:0004373 bowed humerus 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.395833 1.299089 +HP:0011304 Broad thumb 0.000000 MP:0000157 abnormal sternum morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.395349 1.298293 +HP:0011304 Broad thumb 0.000000 MP:0004342 scapular bone foramen 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.395349 1.298293 +HP:0011304 Broad thumb 0.000000 MP:0004346 absent acromion 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.395349 1.298293 +HP:0011304 Broad thumb 0.000000 MP:0004639 fused metacarpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.392157 1.293042 +HP:0011304 Broad thumb 0.000000 MP:0000568 ectopic digits 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 +HP:0011304 Broad thumb 0.000000 MP:0000565 oligodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 +HP:0011304 Broad thumb 0.000000 MP:0000564 syndactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 +HP:0011304 Broad thumb 0.000000 MP:0000567 truncation of digits 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 +HP:0011304 Broad thumb 0.000000 MP:0000562 polydactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 +HP:0011304 Broad thumb 0.000000 MP:0006253 clinodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 +HP:0011304 Broad thumb 0.000000 MP:0013149 macrodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 +HP:0011304 Broad thumb 0.000000 MP:0003800 monodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 +HP:0011304 Broad thumb 0.000000 MP:0005230 ectrodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.473684 1.289703 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0.000000 MP:0000571 interdigital webbing 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.461538 1.273061 +HP:0011304 Broad thumb 0.000000 MP:0004635 short metatarsal bones 0.000000 MP:0004686 decreased length of long bones 4.756984 0.340000 1.271760 +HP:0011304 Broad thumb 0.000000 MP:0000159 abnormal xiphoid process morphology 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.377778 1.269114 +HP:0011304 Broad thumb 0.000000 MP:0008148 abnormal rib-sternum attachment 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.377778 1.269114 +HP:0011304 Broad thumb 0.000000 MP:0012513 absent sternum body 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.377778 1.269114 +HP:0011304 Broad thumb 0.000000 MP:0012280 abnormal sternebra size 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.377778 1.269114 +HP:0011304 Broad thumb 0.000000 MP:0012282 abnormal sternebra number 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.377778 1.269114 +HP:0011304 Broad thumb 0.000000 MP:0012285 misaligned sternebrae 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.377778 1.269114 +HP:0011304 Broad thumb 0.000000 MP:0012667 split sternal manubrium 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.377778 1.269114 +HP:0011304 Broad thumb 0.000000 MP:0012668 absent sternal manubrium 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.377778 1.269114 +HP:0011304 Broad thumb 0.000000 MP:0000555 absent carpal bone 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.375000 1.264440 +HP:0011304 Broad thumb 0.000000 MP:0004339 absent clavicle 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.375000 1.264440 +HP:0011304 Broad thumb 0.000000 MP:0002765 short fibula 0.000000 MP:0004686 decreased length of long bones 4.756984 0.333333 1.259230 +HP:0011304 Broad thumb 0.000000 MP:0002764 short tibia 0.000000 MP:0004686 decreased length of long bones 4.756984 0.333333 1.259230 +HP:0011304 Broad thumb 0.000000 MP:0004083 polysyndactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.450000 1.257047 +HP:0011304 Broad thumb 0.000000 MP:0004340 short scapula 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0004343 small scapula 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0004344 scapular bone hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0011872 absent xiphoid process 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0012514 pectus excavatum 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0012281 decreased sternebra size 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0012283 decreased sternebra number 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0012284 increased sternebra number 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0010082 sternebra fusion 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.369565 1.255244 +HP:0011304 Broad thumb 0.000000 MP:0003072 abnormal metatarsal bone morphology 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.372093 1.254245 +HP:0011304 Broad thumb 0.000000 MP:0000553 absent radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.365385 1.248124 +HP:0011304 Broad thumb 0.000000 MP:0004360 absent ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.365385 1.248124 +HP:0011304 Broad thumb 0.000000 MP:0004361 bowed ulna 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.365385 1.248124 +HP:0011304 Broad thumb 0.000000 MP:0003109 short femur 0.000000 MP:0004686 decreased length of long bones 4.756984 0.326923 1.247064 +HP:0011304 Broad thumb 0.000000 MP:0004686 decreased length of long bones 0.000000 MP:0004686 decreased length of long bones 4.756984 0.324324 1.242097 +HP:0011304 Broad thumb 0.000000 MP:0000572 abnormal autopod morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.459459 1.241910 +HP:0011304 Broad thumb 0.000000 MP:0008146 asymmetric rib-sternum attachment 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.361702 1.241818 +HP:0011304 Broad thumb 0.000000 MP:0004341 absent scapula 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.361702 1.241818 +HP:0011304 Broad thumb 0.000000 MP:0004640 decreased metatarsal bone number 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.363636 1.239910 +HP:0011304 Broad thumb 0.000000 MP:0008915 fused carpal bones 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.360000 1.238893 +HP:0011304 Broad thumb 0.000000 MP:0004374 bowed radius 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.358491 1.236293 +HP:0011304 Broad thumb 0.000000 MP:0008153 decreased diameter of fibula 0.000000 MP:0004686 decreased length of long bones 4.756984 0.320755 1.235243 +HP:0011304 Broad thumb 0.000000 MP:0008156 decreased diameter of tibia 0.000000 MP:0004686 decreased length of long bones 4.756984 0.320755 1.235243 +HP:0011304 Broad thumb 0.000000 MP:0004680 small xiphoid process 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.354167 1.228815 +HP:0011304 Broad thumb 0.000000 MP:0004679 xiphoid process foramen 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.354167 1.228815 +HP:0011304 Broad thumb 0.000000 MP:0004323 sternum hypoplasia 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.354167 1.228815 +HP:0011304 Broad thumb 0.000000 MP:0004321 short sternum 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.354167 1.228815 +HP:0011304 Broad thumb 0.000000 MP:0009049 abnormal hallux morphology 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.428571 1.226752 +HP:0011304 Broad thumb 0.000000 MP:0004673 splayed ribs 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.355556 1.226056 +HP:0011304 Broad thumb 0.000000 MP:0004641 elongated metatarsal bones 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.355556 1.226056 +HP:0011304 Broad thumb 0.000000 MP:0002187 abnormal fibula morphology 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.355556 1.226056 +HP:0011304 Broad thumb 0.000000 MP:0000558 abnormal tibia morphology 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.355556 1.226056 +HP:0011304 Broad thumb 0.000000 MP:0008150 decreased diameter of long bones 0.000000 MP:0004686 decreased length of long bones 4.756984 0.315789 1.225645 +HP:0011304 Broad thumb 0.000000 MP:0008909 supination 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.447368 1.225460 +HP:0011304 Broad thumb 0.000000 MP:0000578 ulcerated paws 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.447368 1.225460 +HP:0011304 Broad thumb 0.000000 MP:0000573 enlarged hind paws 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.447368 1.225460 +HP:0011304 Broad thumb 0.000000 MP:0008152 decreased diameter of femur 0.000000 MP:0004686 decreased length of long bones 4.756984 0.314815 1.223752 +HP:0011304 Broad thumb 0.000000 MP:0004359 short ulna 0.000000 MP:0004686 decreased length of long bones 4.756984 0.312500 1.219245 +HP:0011304 Broad thumb 0.000000 MP:0004356 radius hypoplasia 0.000000 MP:0004686 decreased length of long bones 4.756984 0.312500 1.219245 +HP:0011304 Broad thumb 0.000000 MP:0004355 short radius 0.000000 MP:0004686 decreased length of long bones 4.756984 0.312500 1.219245 +HP:0011304 Broad thumb 0.000000 MP:0004678 split xiphoid process 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.346939 1.216211 +HP:0011304 Broad thumb 0.000000 MP:0000158 absent sternum 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.346939 1.216211 +HP:0011304 Broad thumb 0.000000 MP:0000559 abnormal femur morphology 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.347826 1.212656 +HP:0011304 Broad thumb 0.000000 MP:0008277 abnormal sternum ossification 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.340000 1.203988 +HP:0011304 Broad thumb 0.000000 MP:0008157 decreased diameter of ulna 0.000000 MP:0004686 decreased length of long bones 4.756984 0.303030 1.200629 +HP:0011304 Broad thumb 0.000000 MP:0008155 decreased diameter of radius 0.000000 MP:0004686 decreased length of long bones 4.756984 0.303030 1.200629 +HP:0011304 Broad thumb 0.000000 MP:0004627 abnormal trochanter morphology 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.340426 1.199686 +HP:0011304 Broad thumb 0.000000 MP:0000482 long fibula 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.340426 1.199686 +HP:0011304 Broad thumb 0.000000 MP:0004357 long tibia 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.340426 1.199686 +HP:0011304 Broad thumb 0.000000 MP:0002772 brachypodia 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.425000 1.194431 +HP:0011304 Broad thumb 0.000000 MP:0013076 autopod wound 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.425000 1.194431 +HP:0011304 Broad thumb 0.000000 MP:0020242 enlarged paws 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.425000 1.194431 +HP:0011304 Broad thumb 0.000000 MP:0008278 failure of sternum ossification 0.000000 HP:0040065 Abnormal morphology of bones of the upper limbs 4.263489 0.333333 1.192125 +HP:0011304 Broad thumb 0.000000 MP:0000561 adactyly 0.000000 HP:0001167 Abnormality of finger 4.084764 0.345455 1.187897 +HP:0011304 Broad thumb 0.000000 MP:0004348 long femur 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.333333 1.187123 +HP:0011304 Broad thumb 0.000000 MP:0000576 clubfoot 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.414634 1.179775 +HP:0011304 Broad thumb 0.000000 MP:0008162 increased diameter of tibia 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.326531 1.174947 +HP:0011304 Broad thumb 0.000000 MP:0000133 abnormal long bone metaphysis morphology 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.384615 1.174316 +HP:0011304 Broad thumb 0.000000 MP:0013078 autopod open avulsion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0011304 Broad thumb 0.000000 MP:0013079 autopod open incision 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0011304 Broad thumb 0.000000 MP:0013077 autopod open abrasion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0011304 Broad thumb 0.000000 MP:0013080 autopod open laceration 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0011304 Broad thumb 0.000000 MP:0013082 autopod closed contusion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0011304 Broad thumb 0.000000 MP:0013081 autopod open puncture 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.404762 1.165645 +HP:0011304 Broad thumb 0.000000 MP:0013620 null 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.320000 1.163139 +HP:0011304 Broad thumb 0.000000 MP:0013621 null 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.320000 1.163139 +HP:0011304 Broad thumb 0.000000 MP:0008158 increased diameter of femur 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.320000 1.163139 +HP:0011304 Broad thumb 0.000000 MP:0004358 bowed tibia 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.320000 1.163139 +HP:0011304 Broad thumb 0.000000 MP:0000569 abnormal digit pigmentation 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.382979 1.159665 +HP:0011304 Broad thumb 0.000000 MP:0000574 abnormal foot pad morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.395349 1.152011 +HP:0011304 Broad thumb 0.000000 MP:0005104 abnormal tarsal bone morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.395349 1.152011 +HP:0011304 Broad thumb 0.000000 MP:0013622 null 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.313725 1.151679 +HP:0011304 Broad thumb 0.000000 MP:0004372 bowed fibula 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.313725 1.151679 +HP:0011304 Broad thumb 0.000000 MP:0005430 absent fibula 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.313725 1.151679 +HP:0011304 Broad thumb 0.000000 MP:0002544 brachydactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.375000 1.147522 +HP:0011304 Broad thumb 0.000000 MP:0004349 absent femur 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.307692 1.140551 +HP:0011304 Broad thumb 0.000000 MP:0020221 blanched foot pads 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.386364 1.138845 +HP:0011304 Broad thumb 0.000000 MP:0009729 absent tarsus bones 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.386364 1.138845 +HP:0011304 Broad thumb 0.000000 MP:0003807 camptodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.367347 1.135752 +HP:0011304 Broad thumb 0.000000 MP:0002728 absent tibia 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.301887 1.129740 +HP:0011304 Broad thumb 0.000000 MP:0013624 null 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.301887 1.129740 +HP:0011304 Broad thumb 0.000000 MP:0004371 bowed femur 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.301887 1.129740 +HP:0011304 Broad thumb 0.000000 MP:0005109 abnormal talus morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.377778 1.126120 +HP:0011304 Broad thumb 0.000000 MP:0009728 abnormal calcaneum morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.377778 1.126120 +HP:0011304 Broad thumb 0.000000 MP:0009727 abnormal navicular morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.377778 1.126120 +HP:0011304 Broad thumb 0.000000 MP:0004642 fused metatarsal bones 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.296296 1.119231 +HP:0011304 Broad thumb 0.000000 MP:0004672 short ribs 0.000000 MP:0004686 decreased length of long bones 4.756984 0.260870 1.113980 +HP:0011304 Broad thumb 0.000000 MP:0005110 absent talus 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.369565 1.113812 +HP:0011304 Broad thumb 0.000000 MP:0009001 absent hallux 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.352941 1.113259 +HP:0011304 Broad thumb 0.000000 MP:0013623 null 0.000000 MP:0011504 abnormal limb long bone morphology 4.227785 0.290909 1.109009 +HP:0011304 Broad thumb 0.000000 MP:0000675 abnormal eccrine gland morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.361702 1.101900 +HP:0011304 Broad thumb 0.000000 MP:0013456 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.354167 1.090361 +HP:0011304 Broad thumb 0.000000 MP:0013457 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.346939 1.079178 +HP:0011304 Broad thumb 0.000000 MP:0013458 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.340000 1.068331 +HP:0011304 Broad thumb 0.000000 MP:0000577 absent eccrine glands 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.340000 1.068331 +HP:0011304 Broad thumb 0.000000 MP:0000575 dark foot pads 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.340000 1.068331 +HP:0011304 Broad thumb 0.000000 MP:0003854 abnormal forelimb stylopod morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0011304 Broad thumb 0.000000 MP:0008386 absent styloid process 0.000000 HP:0040070 Abnormality of upper limb bone 3.785570 0.288136 1.044393 +HP:0011304 Broad thumb 0.000000 MP:0003723 abnormal long bone morphology 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.297297 1.032445 +HP:0011304 Broad thumb 0.000000 MP:0002109 abnormal limb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.378378 1.030954 +HP:0011304 Broad thumb 0.000000 MP:0002115 abnormal limb bone morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.378378 1.030954 +HP:0011304 Broad thumb 0.000000 MP:0008919 fused tarsal bones 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.314815 1.028002 +HP:0011304 Broad thumb 0.000000 MP:0004695 increased length of long bones 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.289474 1.018770 +HP:0011304 Broad thumb 0.000000 MP:0004214 abnormal long bone diaphysis morphology 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.289474 1.018770 +HP:0011304 Broad thumb 0.000000 MP:0000549 absent limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0000548 long limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0008985 hemimelia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0000556 abnormal hindlimb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0000550 abnormal forelimb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0006279 abnormal limb development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0013133 pale limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0020288 supernumerary limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0012000 abnormal limb position 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0011304 Broad thumb 0.000000 MP:0008151 increased diameter of long bones 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.282051 1.005624 +HP:0011304 Broad thumb 0.000000 MP:0004576 abnormal foot plate morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.358974 1.004171 +HP:0011304 Broad thumb 0.000000 MP:0006280 abnormal digit development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.358974 1.004171 +HP:0011304 Broad thumb 0.000000 MP:0003855 abnormal forelimb zeugopod morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.358974 1.004171 +HP:0011304 Broad thumb 0.000000 MP:0003856 abnormal hindlimb stylopod morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.358974 1.004171 +HP:0011304 Broad thumb 0.000000 MP:0011685 abnormal limb paddle morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.358974 1.004171 +HP:0011304 Broad thumb 0.000000 MP:0000131 abnormal long bone epiphysis morphology 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.275000 0.992974 +HP:0011304 Broad thumb 0.000000 MP:0013619 null 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.275000 0.992974 +HP:0011304 Broad thumb 0.000000 MP:0000557 absent hindlimb 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.350000 0.991540 +HP:0011304 Broad thumb 0.000000 MP:0000551 absent forelimb 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.350000 0.991540 +HP:0011304 Broad thumb 0.000000 MP:0013069 limb wound 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.350000 0.991540 +HP:0011304 Broad thumb 0.000000 MP:0000150 abnormal rib morphology 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.268293 0.980790 +HP:0011304 Broad thumb 0.000000 MP:0004509 abnormal pelvic girdle bone morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.341463 0.979373 +HP:0011304 Broad thumb 0.000000 MP:0009005 abnormal sesamoid bone of gastrocnemius morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.341463 0.979373 +HP:0011304 Broad thumb 0.000000 MP:0003857 abnormal hindlimb zeugopod morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.341463 0.979373 +HP:0011304 Broad thumb 0.000000 MP:0004674 thin ribs 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.261905 0.969044 +HP:0011304 Broad thumb 0.000000 MP:0004677 truncated ribs 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.261905 0.969044 +HP:0011304 Broad thumb 0.000000 MP:0000153 rib bifurcation 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.261905 0.969044 +HP:0011304 Broad thumb 0.000000 MP:0000132 thickened long bone epiphysis 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.261905 0.969044 +HP:0011304 Broad thumb 0.000000 MP:0008910 thin long bone epiphysis 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.261905 0.969044 +HP:0011304 Broad thumb 0.000000 MP:0008922 abnormal cervical rib 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.261905 0.969044 +HP:0011304 Broad thumb 0.000000 MP:0013074 limb open puncture 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.333333 0.967644 +HP:0011304 Broad thumb 0.000000 MP:0013075 limb closed contusion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.333333 0.967644 +HP:0011304 Broad thumb 0.000000 MP:0013071 limb open avulsion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.333333 0.967644 +HP:0011304 Broad thumb 0.000000 MP:0013070 limb open abrasion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.333333 0.967644 +HP:0011304 Broad thumb 0.000000 MP:0013073 limb open laceration 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.333333 0.967644 +HP:0011304 Broad thumb 0.000000 MP:0013072 limb open incision 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.333333 0.967644 +HP:0011304 Broad thumb 0.000000 MP:0005650 abnormal limb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.333333 0.967644 +HP:0011304 Broad thumb 0.000000 MP:0004671 long ribs 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.255814 0.957709 +HP:0011304 Broad thumb 0.000000 MP:0002823 abnormal rib development 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.255814 0.957709 +HP:0011304 Broad thumb 0.000000 MP:0000154 rib fusion 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.255814 0.957709 +HP:0011304 Broad thumb 0.000000 MP:0000480 increased rib number 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.255814 0.957709 +HP:0011304 Broad thumb 0.000000 MP:0003055 abnormal long bone epiphyseal plate morphology 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.255814 0.957709 +HP:0011304 Broad thumb 0.000000 MP:0004575 small limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.325581 0.956326 +HP:0011304 Broad thumb 0.000000 MP:0004574 broad limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.325581 0.956326 +HP:0011304 Broad thumb 0.000000 MP:0004573 absent limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.325581 0.956326 +HP:0011304 Broad thumb 0.000000 MP:0013167 abnormal hindlimb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.325581 0.956326 +HP:0011304 Broad thumb 0.000000 MP:0013164 abnormal forelimb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.325581 0.956326 +HP:0011304 Broad thumb 0.000000 MP:0006398 increased long bone epiphyseal plate size 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.250000 0.946764 +HP:0011304 Broad thumb 0.000000 MP:0006397 disorganized long bone epiphyseal plate 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.250000 0.946764 +HP:0011304 Broad thumb 0.000000 MP:0006399 abnormal long bone epiphyseal ossification zone morphology 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.250000 0.946764 +HP:0011304 Broad thumb 0.000000 MP:0006396 decreased long bone epiphyseal plate size 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.250000 0.946764 +HP:0011304 Broad thumb 0.000000 MP:0004507 abnormal ischium morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.318182 0.945396 +HP:0011304 Broad thumb 0.000000 MP:0004506 abnormal pubis morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.318182 0.945396 +HP:0011304 Broad thumb 0.000000 MP:0011261 abnormal limb mesenchyme morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.318182 0.945396 +HP:0011304 Broad thumb 0.000000 MP:0012528 abnormal zone of polarizing activity morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.318182 0.945396 +HP:0011304 Broad thumb 0.000000 MP:0005354 abnormal ilium morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.318182 0.945396 +HP:0011304 Broad thumb 0.000000 MP:0000165 abnormal long bone hypertrophic chondrocyte zone 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.244444 0.936185 +HP:0011304 Broad thumb 0.000000 MP:0003662 abnormal long bone epiphyseal plate proliferative zone 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.244444 0.936185 +HP:0011304 Broad thumb 0.000000 MP:0004691 absent pubis 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0004692 small pubis 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0004689 small ischium 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0004688 absent ilium 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0013166 small forelimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0013169 small hindlimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0013168 absent hindlimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0013165 absent forelimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0003445 sirenomelia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0012531 delayed limb development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0005353 abnormal patella morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.311111 0.934833 +HP:0011304 Broad thumb 0.000000 MP:0000151 absent ribs 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.239130 0.925953 +HP:0011304 Broad thumb 0.000000 MP:0003345 decreased rib number 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.239130 0.925953 +HP:0011304 Broad thumb 0.000000 MP:0003408 increased width of hypertrophic chondrocyte zone 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.239130 0.925953 +HP:0011304 Broad thumb 0.000000 MP:0003409 decreased width of hypertrophic chondrocyte zone 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.239130 0.925953 +HP:0011304 Broad thumb 0.000000 MP:0004690 ischium hypoplasia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.304348 0.924616 +HP:0011304 Broad thumb 0.000000 MP:0008905 abnormal femoral fat pad morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.304348 0.924616 +HP:0011304 Broad thumb 0.000000 MP:0009575 abnormal pubic symphysis morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.304348 0.924616 +HP:0011304 Broad thumb 0.000000 MP:0009874 abnormal interdigital cell death 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.304348 0.924616 +HP:0011304 Broad thumb 0.000000 MP:0000152 absent proximal rib 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.234043 0.916050 +HP:0011304 Broad thumb 0.000000 MP:0001676 abnormal apical ectodermal ridge morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.297872 0.914726 +HP:0011304 Broad thumb 0.000000 MP:0009875 absent interdigital cell death 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.297872 0.914726 +HP:0011304 Broad thumb 0.000000 MP:0004693 pubis hypoplasia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.291667 0.905148 +HP:0011304 Broad thumb 0.000000 MP:0001677 absent apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.291667 0.905148 +HP:0011304 Broad thumb 0.000000 MP:0001678 thick apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.291667 0.905148 +HP:0011304 Broad thumb 0.000000 MP:0001679 thin apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.291667 0.905148 +HP:0011304 Broad thumb 0.000000 MP:0004675 rib fractures 0.000000 MP:0003723 abnormal long bone morphology 3.585446 0.224490 0.897160 +HP:0011304 Broad thumb 0.000000 MP:0009290 increased femoral fat pad weight 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.285714 0.895864 +HP:0011304 Broad thumb 0.000000 MP:0009291 decreased femoral fat pad weight 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.285714 0.895864 +HP:0011304 Broad thumb 0.000000 MP:0000547 short limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.285714 0.895864 +HP:0011304 Broad thumb 0.000000 MP:0008736 micromelia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.280000 0.886860 +HP:0011304 Broad thumb 0.000000 MP:0004694 absent patella 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.274510 0.878122 +HP:0011304 Broad thumb 0.000000 MP:0004161 cervical aortic arch 0.000000 HP:0040070 Abnormality of upper limb bone 3.785570 0.200000 0.870123 +HP:0011304 Broad thumb 0.000000 MP:0009250 abnormal appendicular skeleton morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.270270 0.855292 +HP:0011304 Broad thumb 0.000000 MP:0002759 abnormal caudal vertebrae morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.238095 0.787210 +HP:0011304 Broad thumb 0.000000 MP:0004652 small caudal vertebrae 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.232558 0.778002 +HP:0011304 Broad thumb 0.000000 MP:0004653 absent caudal vertebrae 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.232558 0.778002 +HP:0011304 Broad thumb 0.000000 MP:0013612 null 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.232558 0.778002 +HP:0011304 Broad thumb 0.000000 MP:0004614 caudal vertebral transformation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.227273 0.769110 +HP:0011304 Broad thumb 0.000000 MP:0008833 caudal hemivertebra 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.217391 0.752205 +HP:0011304 Broad thumb 0.000000 MP:0001539 decreased caudal vertebrae number 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.217391 0.752205 +HP:0011304 Broad thumb 0.000000 MP:0010102 increased caudal vertebrae number 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.212766 0.744160 +HP:0011304 Broad thumb 0.000000 MP:0004619 caudal vertebral fusion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.181818 0.687913 +HP:0011304 Broad thumb 0.000000 MP:0003456 absent tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.153846 0.632788 +HP:0011304 Broad thumb 0.000000 MP:0003201 extremity edema 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.139535 0.602638 +HP:0011304 Broad thumb 0.000000 MP:0006284 absent hypaxial muscle 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.139535 0.600221 +HP:0011304 Broad thumb 0.000000 MP:0012063 absent tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.136364 0.595750 +HP:0011304 Broad thumb 0.000000 MP:0013178 tail necrosis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.133333 0.589094 +HP:0011304 Broad thumb 0.000000 MP:0000583 long toenails 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.127660 0.574111 +HP:0011304 Broad thumb 0.000000 MP:0003082 abnormal gastrocnemius morphology 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.127660 0.574111 +HP:0011304 Broad thumb 0.000000 MP:0003081 abnormal soleus morphology 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.127660 0.574111 +HP:0011304 Broad thumb 0.000000 MP:0005174 abnormal tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.125000 0.570388 +HP:0011304 Broad thumb 0.000000 MP:0013188 abnormal gastrocnemius weight 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.122449 0.562273 +HP:0011304 Broad thumb 0.000000 MP:0020165 abnormal soleus weight 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.122449 0.562273 +HP:0011304 Broad thumb 0.000000 MP:0011276 increased tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.120000 0.558863 +HP:0011304 Broad thumb 0.000000 MP:0011277 decreased tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.120000 0.558863 +HP:0011304 Broad thumb 0.000000 MP:0005175 non-pigmented tail tip 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.120000 0.558863 +HP:0011304 Broad thumb 0.000000 MP:0009421 increased gastrocnemius weight 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.117647 0.551138 +HP:0011304 Broad thumb 0.000000 MP:0009426 decreased soleus weight 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.117647 0.551138 +HP:0011304 Broad thumb 0.000000 MP:0009425 increased soleus weight 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.117647 0.551138 +HP:0011304 Broad thumb 0.000000 MP:0009422 decreased gastrocnemius weight 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.117647 0.551138 +HP:0011304 Broad thumb 0.000000 MP:0009434 paraparesis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.114754 0.546511 +HP:0011304 Broad thumb 0.000000 MP:0005371 limbs/digits/tail phenotype 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.108108 0.530450 +HP:0011304 Broad thumb 0.000000 MP:0002111 abnormal tail morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.105263 0.523423 +HP:0011304 Broad thumb 0.000000 MP:0002632 vestigial tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0000589 thin tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0000588 thick tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0000585 kinked tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0006281 abnormal tail development 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0013179 wavy tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0013177 abnormal tail tip morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0013176 abnormal tail position or orientation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0013175 bifurcated tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0013113 greasy tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0011999 abnormal tail length 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 +HP:0011304 Broad thumb 0.000000 MP:0010233 hairless tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.102564 0.516669 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0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.093023 0.492052 +HP:0011304 Broad thumb 0.000000 MP:0013085 tail open avulsion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.093023 0.492052 +HP:0011304 Broad thumb 0.000000 MP:0013086 tail open incision 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.093023 0.492052 +HP:0011304 Broad thumb 0.000000 MP:0013089 tail closed contusion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.093023 0.492052 +HP:0011304 Broad thumb 0.000000 MP:0013084 tail open abrasion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.093023 0.492052 +HP:0011304 Broad thumb 0.000000 MP:0003401 enlarged tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.090909 0.486428 +HP:0011304 Broad thumb 0.000000 MP:0012277 increased tail bud apoptosis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.090909 0.486428 +HP:0011304 Broad thumb 0.000000 MP:0012713 abnormal ventral ectodermal ridge morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.090909 0.486428 +HP:0011304 Broad thumb 0.000000 MP:0012062 small tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.090909 0.486428 +HP:0011304 Broad thumb 0.000000 MP:0013180 truncated tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.088889 0.480993 +HP:0011304 Broad thumb 0.000000 MP:0012714 decreased ventral ectodermal ridge size 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.088889 0.480993 +HP:0010055 Broad hallux 0.000000 MP:0009049 abnormal hallux morphology 0.000000 MP:0009049 abnormal hallux morphology 6.958268 0.920000 2.530140 +HP:0010055 Broad hallux 0.000000 MP:0009001 absent hallux 0.000000 MP:0009049 abnormal hallux morphology 6.958268 0.676471 2.169577 +HP:0010055 Broad hallux 0.000000 MP:0000561 adactyly 0.000000 MP:0009049 abnormal hallux morphology 6.958268 0.589744 2.025733 +HP:0010055 Broad hallux 0.000000 MP:0002544 brachydactyly 0.000000 HP:0001780 Abnormality of toe 4.527664 0.636364 1.697422 +HP:0010055 Broad hallux 0.000000 MP:0002772 brachypodia 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.730769 1.676883 +HP:0010055 Broad hallux 0.000000 MP:0020242 enlarged paws 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.730769 1.676883 +HP:0010055 Broad hallux 0.000000 MP:0000576 clubfoot 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.703704 1.645537 +HP:0010055 Broad hallux 0.000000 MP:0002110 abnormal digit morphology 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.720000 1.590052 +HP:0010055 Broad hallux 0.000000 MP:0005104 abnormal tarsal bone morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.655172 1.587781 +HP:0010055 Broad hallux 0.000000 MP:0009729 absent tarsus bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.633333 1.561093 +HP:0010055 Broad hallux 0.000000 MP:0000568 ectopic digits 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0000565 oligodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0000564 syndactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0000567 truncation of digits 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0000562 polydactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0006253 clinodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0013149 macrodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0003800 monodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0005230 ectrodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.692308 1.559175 +HP:0010055 Broad hallux 0.000000 MP:0005109 abnormal talus morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.612903 1.535708 +HP:0010055 Broad hallux 0.000000 MP:0009728 abnormal calcaneum morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.612903 1.535708 +HP:0010055 Broad hallux 0.000000 MP:0009727 abnormal navicular morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.612903 1.535708 +HP:0010055 Broad hallux 0.000000 MP:0000571 interdigital webbing 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.666667 1.530029 +HP:0010055 Broad hallux 0.000000 MP:0005110 absent talus 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.593750 1.511522 +HP:0010055 Broad hallux 0.000000 MP:0000572 abnormal autopod morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.680000 1.510849 +HP:0010055 Broad hallux 0.000000 MP:0010772 abnormal pollex morphology 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.642857 1.502458 +HP:0010055 Broad hallux 0.000000 MP:0006296 arachnodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.642857 1.502458 +HP:0010055 Broad hallux 0.000000 MP:0004083 polysyndactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.642857 1.502458 +HP:0010055 Broad hallux 0.000000 MP:0005306 abnormal phalanx morphology 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.642857 1.502458 +HP:0010055 Broad hallux 0.000000 MP:0008909 supination 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.653846 1.481509 +HP:0010055 Broad hallux 0.000000 MP:0000578 ulcerated paws 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.653846 1.481509 +HP:0010055 Broad hallux 0.000000 MP:0000573 enlarged hind paws 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.653846 1.481509 +HP:0010055 Broad hallux 0.000000 MP:0000413 polyphalangy 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.620690 1.476327 +HP:0010055 Broad hallux 0.000000 MP:0008829 triphalangia 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.600000 1.451513 +HP:0010055 Broad hallux 0.000000 MP:0008730 fused phalanges 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.580645 1.427909 +HP:0010055 Broad hallux 0.000000 MP:0013076 autopod wound 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.607143 1.427618 +HP:0010055 Broad hallux 0.000000 MP:0003072 abnormal metatarsal bone morphology 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.516129 1.409262 +HP:0010055 Broad hallux 0.000000 MP:0004640 decreased metatarsal bone number 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.500000 1.387068 +HP:0010055 Broad hallux 0.000000 MP:0013078 autopod open avulsion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0010055 Broad hallux 0.000000 MP:0013079 autopod open incision 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0010055 Broad hallux 0.000000 MP:0013077 autopod open abrasion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0010055 Broad hallux 0.000000 MP:0013080 autopod open laceration 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0010055 Broad hallux 0.000000 MP:0013082 autopod closed contusion 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0010055 Broad hallux 0.000000 MP:0013081 autopod open puncture 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.566667 1.379210 +HP:0010055 Broad hallux 0.000000 MP:0004641 elongated metatarsal bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.484848 1.365890 +HP:0010055 Broad hallux 0.000000 MP:0000574 abnormal foot pad morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.548387 1.356782 +HP:0010055 Broad hallux 0.000000 MP:0008919 fused tarsal bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.475000 1.351946 +HP:0010055 Broad hallux 0.000000 MP:0002543 brachyphalangia 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.514286 1.343840 +HP:0010055 Broad hallux 0.000000 MP:0000569 abnormal digit pigmentation 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.514286 1.343840 +HP:0010055 Broad hallux 0.000000 MP:0009744 postaxial polydactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.514286 1.343840 +HP:0010055 Broad hallux 0.000000 MP:0009743 preaxial polydactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.514286 1.343840 +HP:0010055 Broad hallux 0.000000 MP:0020221 blanched foot pads 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.531250 1.335414 +HP:0010055 Broad hallux 0.000000 MP:0004509 abnormal pelvic girdle bone morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.535714 1.311003 +HP:0010055 Broad hallux 0.000000 MP:0009005 abnormal sesamoid bone of gastrocnemius morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.535714 1.311003 +HP:0010055 Broad hallux 0.000000 MP:0003857 abnormal hindlimb zeugopod morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.535714 1.311003 +HP:0010055 Broad hallux 0.000000 MP:0003807 camptodactyly 0.000000 MP:0002110 abnormal digit morphology 3.511482 0.486486 1.307015 +HP:0010055 Broad hallux 0.000000 MP:0000554 abnormal carpal bone morphology 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.516129 1.294167 +HP:0010055 Broad hallux 0.000000 MP:0000675 abnormal eccrine gland morphology 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.485714 1.276900 +HP:0010055 Broad hallux 0.000000 MP:0003073 abnormal metacarpal bone morphology 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.500000 1.273785 +HP:0010055 Broad hallux 0.000000 MP:0004508 abnormal pectoral girdle bone morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.535714 1.267756 +HP:0010055 Broad hallux 0.000000 MP:0003854 abnormal forelimb stylopod morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.535714 1.267756 +HP:0010055 Broad hallux 0.000000 MP:0013456 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.472222 1.259041 +HP:0010055 Broad hallux 0.000000 MP:0004635 short metatarsal bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.410256 1.256436 +HP:0010055 Broad hallux 0.000000 MP:0004636 decreased metacarpal bone number 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.484848 1.254337 +HP:0010055 Broad hallux 0.000000 MP:0010775 abnormal scaphoid morphology 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.484848 1.254337 +HP:0010055 Broad hallux 0.000000 MP:0002109 abnormal limb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.560000 1.254210 +HP:0010055 Broad hallux 0.000000 MP:0002115 abnormal limb bone morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.560000 1.254210 +HP:0010055 Broad hallux 0.000000 MP:0004507 abnormal ischium morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.483871 1.245953 +HP:0010055 Broad hallux 0.000000 MP:0004506 abnormal pubis morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.483871 1.245953 +HP:0010055 Broad hallux 0.000000 MP:0005354 abnormal ilium morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.483871 1.245953 +HP:0010055 Broad hallux 0.000000 MP:0013457 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.459459 1.241910 +HP:0010055 Broad hallux 0.000000 MP:0004638 elongated metacarpal bones 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.470588 1.235753 +HP:0010055 Broad hallux 0.000000 MP:0000549 absent limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0000548 long limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0008985 hemimelia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0000556 abnormal hindlimb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0000550 abnormal forelimb morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0006279 abnormal limb development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0013133 pale limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0020288 supernumerary limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0012000 abnormal limb position 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.538462 1.229854 +HP:0010055 Broad hallux 0.000000 MP:0004691 absent pubis 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.468750 1.226331 +HP:0010055 Broad hallux 0.000000 MP:0004692 small pubis 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.468750 1.226331 +HP:0010055 Broad hallux 0.000000 MP:0004689 small ischium 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.468750 1.226331 +HP:0010055 Broad hallux 0.000000 MP:0004688 absent ilium 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.468750 1.226331 +HP:0010055 Broad hallux 0.000000 MP:0003445 sirenomelia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.468750 1.226331 +HP:0010055 Broad hallux 0.000000 MP:0005353 abnormal patella morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.468750 1.226331 +HP:0010055 Broad hallux 0.000000 MP:0013458 null 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.447368 1.225460 +HP:0010055 Broad hallux 0.000000 MP:0000577 absent eccrine glands 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.447368 1.225460 +HP:0010055 Broad hallux 0.000000 MP:0000575 dark foot pads 0.000000 MP:0000572 abnormal autopod morphology 3.356859 0.447368 1.225460 +HP:0010055 Broad hallux 0.000000 MP:0004642 fused metatarsal bones 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.380952 1.210732 +HP:0010055 Broad hallux 0.000000 MP:0004690 ischium hypoplasia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.454545 1.207607 +HP:0010055 Broad hallux 0.000000 MP:0008905 abnormal femoral fat pad morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.454545 1.207607 +HP:0010055 Broad hallux 0.000000 MP:0009575 abnormal pubic symphysis morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.454545 1.207607 +HP:0010055 Broad hallux 0.000000 MP:0004576 abnormal foot plate morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.518519 1.206864 +HP:0010055 Broad hallux 0.000000 MP:0006280 abnormal digit development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.518519 1.206864 +HP:0010055 Broad hallux 0.000000 MP:0011504 abnormal limb long bone morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.518519 1.206864 +HP:0010055 Broad hallux 0.000000 MP:0003855 abnormal forelimb zeugopod morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.518519 1.206864 +HP:0010055 Broad hallux 0.000000 MP:0003856 abnormal hindlimb stylopod morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.518519 1.206864 +HP:0010055 Broad hallux 0.000000 MP:0011685 abnormal limb paddle morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.518519 1.206864 +HP:0010055 Broad hallux 0.000000 MP:0000149 abnormal scapula morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.483871 1.204853 +HP:0010055 Broad hallux 0.000000 MP:0002187 abnormal fibula morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.441176 1.189715 +HP:0010055 Broad hallux 0.000000 MP:0000558 abnormal tibia morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.441176 1.189715 +HP:0010055 Broad hallux 0.000000 MP:0004345 abnormal acromion morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.468750 1.185877 +HP:0010055 Broad hallux 0.000000 MP:0004347 abnormal scapular spine morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.468750 1.185877 +HP:0010055 Broad hallux 0.000000 MP:0000133 abnormal long bone metaphysis morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.500000 1.185117 +HP:0010055 Broad hallux 0.000000 MP:0000557 absent hindlimb 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.500000 1.185117 +HP:0010055 Broad hallux 0.000000 MP:0000551 absent forelimb 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.500000 1.185117 +HP:0010055 Broad hallux 0.000000 MP:0013069 limb wound 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.500000 1.185117 +HP:0010055 Broad hallux 0.000000 MP:0004693 pubis hypoplasia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.428571 1.172596 +HP:0010055 Broad hallux 0.000000 MP:0000559 abnormal femur morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.428571 1.172596 +HP:0010055 Broad hallux 0.000000 MP:0000555 absent carpal bone 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.421053 1.168906 +HP:0010055 Broad hallux 0.000000 MP:0000157 abnormal sternum morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.454545 1.167771 +HP:0010055 Broad hallux 0.000000 MP:0004342 scapular bone foramen 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.454545 1.167771 +HP:0010055 Broad hallux 0.000000 MP:0004346 absent acromion 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.454545 1.167771 +HP:0010055 Broad hallux 0.000000 MP:0005298 abnormal clavicle morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.454545 1.167771 +HP:0010055 Broad hallux 0.000000 MP:0004627 abnormal trochanter morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.416667 1.156196 +HP:0010055 Broad hallux 0.000000 MP:0009290 increased femoral fat pad weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.416667 1.156196 +HP:0010055 Broad hallux 0.000000 MP:0009291 decreased femoral fat pad weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.416667 1.156196 +HP:0010055 Broad hallux 0.000000 MP:0000482 long fibula 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.416667 1.156196 +HP:0010055 Broad hallux 0.000000 MP:0004357 long tibia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.416667 1.156196 +HP:0010055 Broad hallux 0.000000 MP:0004637 metacarpal bone hypoplasia 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.410256 1.153822 +HP:0010055 Broad hallux 0.000000 MP:0004338 small clavicle 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.441176 1.150470 +HP:0010055 Broad hallux 0.000000 MP:0004322 abnormal sternebra morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.441176 1.150470 +HP:0010055 Broad hallux 0.000000 MP:0004320 split sternum 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.441176 1.150470 +HP:0010055 Broad hallux 0.000000 MP:0008785 abnormal sternum manubrium morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.441176 1.150470 +HP:0010055 Broad hallux 0.000000 MP:0012512 abnormal sternum body morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.441176 1.150470 +HP:0010055 Broad hallux 0.000000 MP:0012279 wide sternum 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.441176 1.150470 +HP:0010055 Broad hallux 0.000000 MP:0011505 camptomelia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0010055 Broad hallux 0.000000 MP:0013074 limb open puncture 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0010055 Broad hallux 0.000000 MP:0013075 limb closed contusion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0010055 Broad hallux 0.000000 MP:0013071 limb open avulsion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0010055 Broad hallux 0.000000 MP:0013070 limb open abrasion 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0010055 Broad hallux 0.000000 MP:0013073 limb open laceration 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0010055 Broad hallux 0.000000 MP:0013072 limb open incision 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0010055 Broad hallux 0.000000 MP:0005650 abnormal limb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.466667 1.144931 +HP:0010055 Broad hallux 0.000000 MP:0004348 long femur 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.405405 1.140464 +HP:0010055 Broad hallux 0.000000 MP:0004634 short metacarpal bones 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.400000 1.139308 +HP:0010055 Broad hallux 0.000000 MP:0008915 fused carpal bones 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.400000 1.139308 +HP:0010055 Broad hallux 0.000000 MP:0003074 absent metacarpal bones 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.400000 1.139308 +HP:0010055 Broad hallux 0.000000 MP:0000159 abnormal xiphoid process morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0008148 abnormal rib-sternum attachment 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0012513 absent sternum body 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0012280 abnormal sternebra size 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0012282 abnormal sternebra number 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0012285 misaligned sternebrae 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0012667 split sternal manubrium 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0012668 absent sternal manubrium 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0005296 abnormal humerus morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.428571 1.133916 +HP:0010055 Broad hallux 0.000000 MP:0004575 small limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0010055 Broad hallux 0.000000 MP:0004574 broad limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0010055 Broad hallux 0.000000 MP:0004573 absent limb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0010055 Broad hallux 0.000000 MP:0013167 abnormal hindlimb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0010055 Broad hallux 0.000000 MP:0013164 abnormal forelimb bud morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.451613 1.126313 +HP:0010055 Broad hallux 0.000000 MP:0004694 absent patella 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.394737 1.125358 +HP:0010055 Broad hallux 0.000000 MP:0008162 increased diameter of tibia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.394737 1.125358 +HP:0010055 Broad hallux 0.000000 MP:0000552 abnormal radius morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0004340 short scapula 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0004343 small scapula 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0004344 scapular bone hypoplasia 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0011872 absent xiphoid process 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0012514 pectus excavatum 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0012281 decreased sternebra size 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0012283 decreased sternebra number 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0012284 increased sternebra number 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0005108 abnormal ulna morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0010082 sternebra fusion 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.416667 1.118056 +HP:0010055 Broad hallux 0.000000 MP:0013620 null 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.384615 1.110837 +HP:0010055 Broad hallux 0.000000 MP:0013621 null 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.384615 1.110837 +HP:0010055 Broad hallux 0.000000 MP:0008158 increased diameter of femur 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.384615 1.110837 +HP:0010055 Broad hallux 0.000000 MP:0008159 increased diameter of fibula 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.384615 1.110837 +HP:0010055 Broad hallux 0.000000 MP:0004358 bowed tibia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.384615 1.110837 +HP:0010055 Broad hallux 0.000000 MP:0011261 abnormal limb mesenchyme morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.437500 1.108575 +HP:0010055 Broad hallux 0.000000 MP:0012528 abnormal zone of polarizing activity morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.437500 1.108575 +HP:0010055 Broad hallux 0.000000 MP:0008146 asymmetric rib-sternum attachment 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.405405 1.102844 +HP:0010055 Broad hallux 0.000000 MP:0004341 absent scapula 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.405405 1.102844 +HP:0010055 Broad hallux 0.000000 MP:0004350 long humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.405405 1.102844 +HP:0010055 Broad hallux 0.000000 MP:0004353 abnormal deltoid tuberosity morphology 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.405405 1.102844 +HP:0010055 Broad hallux 0.000000 MP:0004639 fused metacarpal bones 0.000000 HP:0001155 Abnormality of the hand 3.245058 0.372093 1.098846 +HP:0010055 Broad hallux 0.000000 MP:0013622 null 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.375000 1.096863 +HP:0010055 Broad hallux 0.000000 MP:0004372 bowed fibula 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.375000 1.096863 +HP:0010055 Broad hallux 0.000000 MP:0005430 absent fibula 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.375000 1.096863 +HP:0010055 Broad hallux 0.000000 MP:0013166 small forelimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.424242 1.091649 +HP:0010055 Broad hallux 0.000000 MP:0013169 small hindlimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.424242 1.091649 +HP:0010055 Broad hallux 0.000000 MP:0013168 absent hindlimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.424242 1.091649 +HP:0010055 Broad hallux 0.000000 MP:0013165 absent forelimb buds 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.424242 1.091649 +HP:0010055 Broad hallux 0.000000 MP:0012531 delayed limb development 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.424242 1.091649 +HP:0010055 Broad hallux 0.000000 MP:0004680 small xiphoid process 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0010055 Broad hallux 0.000000 MP:0004679 xiphoid process foramen 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0010055 Broad hallux 0.000000 MP:0008951 long radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0010055 Broad hallux 0.000000 MP:0004323 sternum hypoplasia 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0010055 Broad hallux 0.000000 MP:0004321 short sternum 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0010055 Broad hallux 0.000000 MP:0004370 long ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0010055 Broad hallux 0.000000 MP:0004354 absent deltoid tuberosity 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.394737 1.088236 +HP:0010055 Broad hallux 0.000000 MP:0002765 short fibula 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.365854 1.083405 +HP:0010055 Broad hallux 0.000000 MP:0002764 short tibia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.365854 1.083405 +HP:0010055 Broad hallux 0.000000 MP:0004349 absent femur 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.365854 1.083405 +HP:0010055 Broad hallux 0.000000 MP:0009874 abnormal interdigital cell death 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.411765 1.075476 +HP:0010055 Broad hallux 0.000000 MP:0004678 split xiphoid process 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0010055 Broad hallux 0.000000 MP:0000158 absent sternum 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0010055 Broad hallux 0.000000 MP:0008160 increased diameter of humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0010055 Broad hallux 0.000000 MP:0004339 absent clavicle 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.384615 1.074193 +HP:0010055 Broad hallux 0.000000 MP:0002728 absent tibia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.357143 1.070429 +HP:0010055 Broad hallux 0.000000 MP:0013624 null 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.357143 1.070429 +HP:0010055 Broad hallux 0.000000 MP:0004371 bowed femur 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.357143 1.070429 +HP:0010055 Broad hallux 0.000000 MP:0003109 short femur 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.357143 1.070429 +HP:0010055 Broad hallux 0.000000 MP:0008277 abnormal sternum ossification 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0010055 Broad hallux 0.000000 MP:0008163 increased diameter of ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0010055 Broad hallux 0.000000 MP:0008161 increased diameter of radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0010055 Broad hallux 0.000000 MP:0011530 fused radius and ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0010055 Broad hallux 0.000000 MP:0004337 clavicle hypoplasia 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0010055 Broad hallux 0.000000 MP:0004373 bowed humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.375000 1.060681 +HP:0010055 Broad hallux 0.000000 MP:0004673 splayed ribs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.400000 1.060001 +HP:0010055 Broad hallux 0.000000 MP:0001676 abnormal apical ectodermal ridge morphology 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.400000 1.060001 +HP:0010055 Broad hallux 0.000000 MP:0009875 absent interdigital cell death 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.400000 1.060001 +HP:0010055 Broad hallux 0.000000 MP:0008153 decreased diameter of fibula 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.348837 1.057909 +HP:0010055 Broad hallux 0.000000 MP:0008156 decreased diameter of tibia 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.348837 1.057909 +HP:0010055 Broad hallux 0.000000 MP:0008278 failure of sternum ossification 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.365854 1.047666 +HP:0010055 Broad hallux 0.000000 MP:0004352 absent humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.365854 1.047666 +HP:0010055 Broad hallux 0.000000 MP:0013623 null 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.340909 1.045818 +HP:0010055 Broad hallux 0.000000 MP:0008152 decreased diameter of femur 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.340909 1.045818 +HP:0010055 Broad hallux 0.000000 MP:0001677 absent apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.388889 1.045175 +HP:0010055 Broad hallux 0.000000 MP:0001678 thick apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.388889 1.045175 +HP:0010055 Broad hallux 0.000000 MP:0001679 thin apical ectodermal ridge 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.388889 1.045175 +HP:0010055 Broad hallux 0.000000 MP:0009250 abnormal appendicular skeleton morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.400000 1.040508 +HP:0010055 Broad hallux 0.000000 MP:0004351 short humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.357143 1.035119 +HP:0010055 Broad hallux 0.000000 MP:0000547 short limbs 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.378378 1.030954 +HP:0010055 Broad hallux 0.000000 MP:0003723 abnormal long bone morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.384615 1.020302 +HP:0010055 Broad hallux 0.000000 MP:0008736 micromelia 0.000000 MP:0002115 abnormal limb bone morphology 2.809003 0.368421 1.017298 +HP:0010055 Broad hallux 0.000000 MP:0000553 absent radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0010055 Broad hallux 0.000000 MP:0008154 decreased diameter of humerus 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0010055 Broad hallux 0.000000 MP:0004360 absent ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0010055 Broad hallux 0.000000 MP:0004361 bowed ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.340909 1.011320 +HP:0010055 Broad hallux 0.000000 MP:0004695 increased length of long bones 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.370370 1.001229 +HP:0010055 Broad hallux 0.000000 MP:0004686 decreased length of long bones 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.370370 1.001229 +HP:0010055 Broad hallux 0.000000 MP:0004214 abnormal long bone diaphysis morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.370370 1.001229 +HP:0010055 Broad hallux 0.000000 MP:0004374 bowed radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.333333 1.000020 +HP:0010055 Broad hallux 0.000000 MP:0008150 decreased diameter of long bones 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.357143 0.983187 +HP:0010055 Broad hallux 0.000000 MP:0008151 increased diameter of long bones 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.357143 0.983187 +HP:0010055 Broad hallux 0.000000 MP:0000131 abnormal long bone epiphysis morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.344828 0.966087 +HP:0010055 Broad hallux 0.000000 MP:0013619 null 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.344828 0.966087 +HP:0010055 Broad hallux 0.000000 MP:0000583 long toenails 0.000000 HP:0001760 Abnormality of the foot 3.847914 0.242424 0.965830 +HP:0010055 Broad hallux 0.000000 MP:0008386 absent styloid process 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.306122 0.958334 +HP:0010055 Broad hallux 0.000000 MP:0000150 abnormal rib morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.333333 0.949849 +HP:0010055 Broad hallux 0.000000 MP:0004674 thin ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0010055 Broad hallux 0.000000 MP:0004677 truncated ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0010055 Broad hallux 0.000000 MP:0000153 rib bifurcation 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0010055 Broad hallux 0.000000 MP:0000132 thickened long bone epiphysis 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0010055 Broad hallux 0.000000 MP:0008910 thin long bone epiphysis 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0010055 Broad hallux 0.000000 MP:0008922 abnormal cervical rib 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.322581 0.934404 +HP:0010055 Broad hallux 0.000000 MP:0002759 abnormal caudal vertebrae morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.333333 0.931439 +HP:0010055 Broad hallux 0.000000 MP:0004671 long ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.312500 0.919688 +HP:0010055 Broad hallux 0.000000 MP:0004676 wide ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.312500 0.919688 +HP:0010055 Broad hallux 0.000000 MP:0002823 abnormal rib development 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.312500 0.919688 +HP:0010055 Broad hallux 0.000000 MP:0000154 rib fusion 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.312500 0.919688 +HP:0010055 Broad hallux 0.000000 MP:0000480 increased rib number 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.312500 0.919688 +HP:0010055 Broad hallux 0.000000 MP:0003055 abnormal long bone epiphyseal plate morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.312500 0.919688 +HP:0010055 Broad hallux 0.000000 MP:0004652 small caudal vertebrae 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.322581 0.916293 +HP:0010055 Broad hallux 0.000000 MP:0004653 absent caudal vertebrae 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.322581 0.916293 +HP:0010055 Broad hallux 0.000000 MP:0013612 null 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.322581 0.916293 +HP:0010055 Broad hallux 0.000000 MP:0006398 increased long bone epiphyseal plate size 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.303030 0.905646 +HP:0010055 Broad hallux 0.000000 MP:0006397 disorganized long bone epiphyseal plate 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.303030 0.905646 +HP:0010055 Broad hallux 0.000000 MP:0006399 abnormal long bone epiphyseal ossification zone morphology 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.303030 0.905646 +HP:0010055 Broad hallux 0.000000 MP:0006396 decreased long bone epiphyseal plate size 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.303030 0.905646 +HP:0010055 Broad hallux 0.000000 MP:0004614 caudal vertebral transformation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.312500 0.901862 +HP:0010055 Broad hallux 0.000000 MP:0000165 abnormal long bone hypertrophic chondrocyte zone 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.294118 0.892228 +HP:0010055 Broad hallux 0.000000 MP:0003662 abnormal long bone epiphyseal plate proliferative zone 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.294118 0.892228 +HP:0010055 Broad hallux 0.000000 MP:0004359 short ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.263158 0.888541 +HP:0010055 Broad hallux 0.000000 MP:0004356 radius hypoplasia 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.263158 0.888541 +HP:0010055 Broad hallux 0.000000 MP:0004355 short radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.263158 0.888541 +HP:0010055 Broad hallux 0.000000 MP:0000151 absent ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0010055 Broad hallux 0.000000 MP:0003345 decreased rib number 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0010055 Broad hallux 0.000000 MP:0003408 increased width of hypertrophic chondrocyte zone 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0010055 Broad hallux 0.000000 MP:0003409 decreased width of hypertrophic chondrocyte zone 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.285714 0.879390 +HP:0010055 Broad hallux 0.000000 MP:0008833 caudal hemivertebra 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.294118 0.874935 +HP:0010055 Broad hallux 0.000000 MP:0001539 decreased caudal vertebrae number 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.294118 0.874935 +HP:0010055 Broad hallux 0.000000 MP:0008157 decreased diameter of ulna 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.254237 0.873351 +HP:0010055 Broad hallux 0.000000 MP:0008155 decreased diameter of radius 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.254237 0.873351 +HP:0010055 Broad hallux 0.000000 MP:0004672 short ribs 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.277778 0.867090 +HP:0010055 Broad hallux 0.000000 MP:0000152 absent proximal rib 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.277778 0.867090 +HP:0010055 Broad hallux 0.000000 MP:0010102 increased caudal vertebrae number 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.285714 0.862345 +HP:0010055 Broad hallux 0.000000 MP:0004675 rib fractures 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.706641 0.263158 0.843963 +HP:0010055 Broad hallux 0.000000 MP:0004161 cervical aortic arch 0.000000 HP:0002817 Abnormality of the upper limb 3.000118 0.222222 0.816513 +HP:0010055 Broad hallux 0.000000 MP:0003082 abnormal gastrocnemius morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.205882 0.812730 +HP:0010055 Broad hallux 0.000000 MP:0003081 abnormal soleus morphology 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.205882 0.812730 +HP:0010055 Broad hallux 0.000000 MP:0013188 abnormal gastrocnemius weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.194444 0.789832 +HP:0010055 Broad hallux 0.000000 MP:0020165 abnormal soleus weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.194444 0.789832 +HP:0010055 Broad hallux 0.000000 MP:0004619 caudal vertebral fusion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.232558 0.778002 +HP:0010055 Broad hallux 0.000000 MP:0009421 increased gastrocnemius weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.184211 0.768766 +HP:0010055 Broad hallux 0.000000 MP:0009426 decreased soleus weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.184211 0.768766 +HP:0010055 Broad hallux 0.000000 MP:0009425 increased soleus weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.184211 0.768766 +HP:0010055 Broad hallux 0.000000 MP:0009422 decreased gastrocnemius weight 0.000000 HP:0002814 Abnormality of the lower limb 3.208292 0.184211 0.768766 +HP:0010055 Broad hallux 0.000000 MP:0003456 absent tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.222222 0.760517 +HP:0010055 Broad hallux 0.000000 MP:0003201 extremity edema 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.193548 0.709757 +HP:0010055 Broad hallux 0.000000 MP:0006284 absent hypaxial muscle 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.193548 0.706910 +HP:0010055 Broad hallux 0.000000 MP:0012063 absent tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.187500 0.698579 +HP:0010055 Broad hallux 0.000000 MP:0013178 tail necrosis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.181818 0.687913 +HP:0010055 Broad hallux 0.000000 MP:0005174 abnormal tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.166667 0.658627 +HP:0010055 Broad hallux 0.000000 MP:0005371 limbs/digits/tail phenotype 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.160000 0.645320 +HP:0010055 Broad hallux 0.000000 MP:0011276 increased tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.157895 0.641060 +HP:0010055 Broad hallux 0.000000 MP:0011277 decreased tail pigmentation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.157895 0.641060 +HP:0010055 Broad hallux 0.000000 MP:0005175 non-pigmented tail tip 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.157895 0.641060 +HP:0010055 Broad hallux 0.000000 MP:0002111 abnormal tail morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.153846 0.632788 +HP:0010055 Broad hallux 0.000000 MP:0002632 vestigial tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0000589 thin tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0000588 thick tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0000585 kinked tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0006281 abnormal tail development 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0013179 wavy tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0013177 abnormal tail tip morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0013176 abnormal tail position or orientation 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0013175 bifurcated tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0013113 greasy tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0011999 abnormal tail length 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0010233 hairless tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0003051 curly tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.148148 0.620959 +HP:0010055 Broad hallux 0.000000 MP:0002758 long tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.142857 0.609770 +HP:0010055 Broad hallux 0.000000 MP:0000592 short tail 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.142857 0.609770 +HP:0010055 Broad hallux 0.000000 MP:0009434 paraparesis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.142857 0.609770 +HP:0010055 Broad hallux 0.000000 MP:0013083 tail wound 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.137931 0.599164 +HP:0010055 Broad hallux 0.000000 MP:0002861 abnormal tail bud morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0010055 Broad hallux 0.000000 MP:0013087 tail open laceration 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0010055 Broad hallux 0.000000 MP:0013088 tail open puncture 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0010055 Broad hallux 0.000000 MP:0013085 tail open avulsion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0010055 Broad hallux 0.000000 MP:0013086 tail open incision 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0010055 Broad hallux 0.000000 MP:0013089 tail closed contusion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0010055 Broad hallux 0.000000 MP:0013084 tail open abrasion 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.129032 0.579514 +HP:0010055 Broad hallux 0.000000 MP:0012053 limb hypertonicity 0.000000 HP:0040064 Abnormality of limbs 2.581898 0.127660 0.574111 +HP:0010055 Broad hallux 0.000000 MP:0003401 enlarged tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.125000 0.570388 +HP:0010055 Broad hallux 0.000000 MP:0012277 increased tail bud apoptosis 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.125000 0.570388 +HP:0010055 Broad hallux 0.000000 MP:0012713 abnormal ventral ectodermal ridge morphology 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.125000 0.570388 +HP:0010055 Broad hallux 0.000000 MP:0012062 small tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.125000 0.570388 +HP:0010055 Broad hallux 0.000000 MP:0013180 truncated tail bud 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.121212 0.561679 +HP:0010055 Broad hallux 0.000000 MP:0012714 decreased ventral ectodermal ridge size 0.000000 MP:0005371 limbs/digits/tail phenotype 2.602735 0.121212 0.561679 diff --git a/exomiser-core/src/test/resources/prioritisers/hp-zp-mappings b/exomiser-core/src/test/resources/prioritisers/hp-zp-mappings new file mode 100644 index 000000000..06431d0d5 --- /dev/null +++ b/exomiser-core/src/test/resources/prioritisers/hp-zp-mappings @@ -0,0 +1,292 @@ +# Test data for HP-ZP mappings +# Contains the top 10 matches for the phenotypes HP:0001156, HP:0001363, HP:0011304, HP:0010055 +# +#queryTerm.getId(), queryTerm.getTerm(), queryTerm.getIc(),matchTerm.getId(), matchTerm.getTerm(), matchTerm.getIc(),lcs.getId(), lcs.getTerm(), lcs.getIc(), match.getSimJ(), match.getScore() +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0012193 null 0.000000 HP:0040069 Abnormality of lower limb bone 3.355809 0.423529 1.192176 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0012199 null 0.000000 HP:0040069 Abnormality of lower limb bone 3.355809 0.409091 1.171679 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0001082 abnormal(ly) physical object quality preoptic area 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.390805 1.013222 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0006782 abnormal(ly) curved ventral axis 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.386364 1.007448 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0011993 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.386364 1.007448 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0000875 abnormal(ly) aplastic Meckel's cartilage 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.386364 1.007448 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0000874 abnormal(ly) bent Meckel's cartilage 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.386364 1.007448 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0010902 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.386364 1.007448 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0008615 abnormal(ly) has fewer parts of type otic vesicle towards otolith 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.382022 1.001773 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0011078 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.382022 1.001773 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0005162 abnormal(ly) hypoplastic pharyngeal arch 2 skeleton 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.382022 1.001773 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0010587 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.377778 0.996192 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0003965 abnormal(ly) chromatic property blood 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.377778 0.996192 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0009802 abnormal(ly) increased size somite 15 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.377778 0.996192 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0001042 abnormal(ly) green pancreas 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.313253 0.907136 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0010673 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.298851 0.886037 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0012198 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.295455 0.880988 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0009803 abnormal(ly) fused with somite 15 dorso-medial margin towards somite 15 dorso-medial margin 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.288889 0.871144 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0012194 null 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.202381 0.779298 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0012191 null 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.200000 0.774701 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0012192 null 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.197917 0.770655 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007406 abnormal(ly) present in fewer numbers in organism facial nerve motor nucleus 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.183908 0.742881 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007407 abnormal(ly) aplastic vagal lobe 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.183908 0.742881 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0010586 null 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.179775 0.734487 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0011420 null 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.171717 0.717837 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007348 abnormal(ly) notched ventral mandibular arch 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.529091 0.180851 0.676305 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0001965 abnormal(ly) subdermal Rohon-Beard neuron axon 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.125000 0.612455 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0002322 abnormal(ly) increased rate retinal cell programmed cell death 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.123967 0.609919 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0000235 abnormal(ly) disrupted striated muscle cell development 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.123967 0.609919 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0003543 abnormal(ly) disrupted lipid phosphatase activity 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.123967 0.609919 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0003955 abnormal(ly) present in fewer numbers in organism posterior lateral line neuron 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.120000 0.600081 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0001087 abnormal(ly) decreased length Kupffer's vesicle cilium 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.120000 0.600081 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0001041 abnormal(ly) green liver 0.000000 HP:0009115 Aplasia/hypoplasia involving the skeleton 3.000806 0.119048 0.597695 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0009641 abnormal(ly) loose atrial myocardium cardiac muscle cell 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.115044 0.549237 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0002799 abnormal(ly) morphology post-vent region muscle cell 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.114035 0.546823 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0009980 abnormal(ly) mislocalised ventrally pharyngeal arch 3-7 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.114035 0.546823 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007755 abnormal(ly) decreased occurrence neural crest cell migration 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.114035 0.546823 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007220 abnormal(ly) morphology skeletal muscle cell sarcomere 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.114035 0.546823 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007221 abnormal(ly) morphology skeletal muscle cell M band 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.114035 0.546823 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007219 abnormal(ly) deformed muscle 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.114035 0.546823 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007218 abnormal(ly) disorganized heart cardiac muscle cell 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.113043 0.544440 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007403 abnormal(ly) present in fewer numbers in organism angiogenic sprout 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.104348 0.523081 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0002798 abnormal(ly) dystrophic whole organism 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.103448 0.520822 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007402 abnormal(ly) decreased length angiogenic sprout 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.101695 0.516389 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0010851 null 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.100000 0.512068 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007227 abnormal(ly) morphology leukocyte 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.097345 0.505225 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007226 abnormal(ly) process quality leukocyte chemotaxis 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.097345 0.505225 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0010850 null 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.091603 0.490097 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0011777 null 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.090226 0.486399 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0011778 null 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.089552 0.484580 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007750 abnormal(ly) decreased width Meckel's cartilage 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.076087 0.446666 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0009612 abnormal(ly) malformed neuroectoderm 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.075269 0.444258 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0009613 abnormal(ly) mislocalised axial mesoderm mesodermal cell 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.070707 0.430585 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0011775 null 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.068627 0.424206 +HP:0001156 Brachydactyly syndrome 0.000000 ZP:0007189 abnormal(ly) decreased rate mitochondrial electron transport, NADH to ubiquinone 0.000000 null UBERON:0004288PHENOTYPE 2.622135 0.064220 0.410358 +HP:0001363 Craniosynostosis 0.000000 ZP:0003564 abnormal(ly) absent pigment cell 0.000000 MP:0002835 abnormal cranial suture morphology 5.605829 0.682540 1.956068 +HP:0001363 Craniosynostosis 0.000000 ZP:0003565 abnormal(ly) absent neural crest cell 0.000000 null UBERON:0003685PHENOTYPE 5.569829 0.634921 1.880532 +HP:0001363 Craniosynostosis 0.000000 ZP:0010770 null 0.000000 null UBERON:0002209PHENOTYPE 5.481673 0.609375 1.827675 +HP:0001363 Craniosynostosis 0.000000 ZP:0003562 abnormal(ly) disorganized post-vent region somite border 0.000000 null UBERON:0002209PHENOTYPE 5.481673 0.609375 1.827675 +HP:0001363 Craniosynostosis 0.000000 ZP:0003563 abnormal(ly) present in fewer numbers in organism myocardial precursor 0.000000 null UBERON:0002209PHENOTYPE 5.481673 0.593750 1.804091 +HP:0001363 Craniosynostosis 0.000000 ZP:0003561 abnormal(ly) disorganized trunk somite border 0.000000 null UBERON:0002209PHENOTYPE 5.481673 0.593750 1.804091 +HP:0001363 Craniosynostosis 0.000000 ZP:0012148 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.617647 1.720868 +HP:0001363 Craniosynostosis 0.000000 ZP:0012007 null 0.000000 MP:0003418 premature intramembranous bone ossification 6.599970 0.421053 1.667014 +HP:0001363 Craniosynostosis 0.000000 ZP:0002803 abnormal(ly) morphology muscle sarcomere 0.000000 MP:0008273 abnormal intramembranous bone ossification 6.574774 0.400000 1.621700 +HP:0001363 Craniosynostosis 0.000000 ZP:0007941 abnormal(ly) increased mass density vertebra 0.000000 MP:0008273 abnormal intramembranous bone ossification 6.574774 0.387097 1.595329 +HP:0001363 Craniosynostosis 0.000000 ZP:0006418 abnormal(ly) rough caudal fin upper lobe 0.000000 ZP:0006418 abnormal 6.437272 0.372881 1.549303 +HP:0001363 Craniosynostosis 0.000000 ZP:0003964 abnormal(ly) decreased process quality erythrocyte maturation 0.000000 null GO:0036072PHENOTYPE 6.545803 0.360656 1.536483 +HP:0001363 Craniosynostosis 0.000000 ZP:0004198 abnormal(ly) partially paralysed whole organism 0.000000 ZP:0006418 abnormal 6.437272 0.349206 1.499312 +HP:0001363 Craniosynostosis 0.000000 ZP:0010767 null 0.000000 ZP:0012066 null 5.711380 0.376812 1.467009 +HP:0001363 Craniosynostosis 0.000000 ZP:0010771 null 0.000000 HP:0002683 Abnormality of the calvaria 3.779994 0.539683 1.428284 +HP:0001363 Craniosynostosis 0.000000 ZP:0007465 abnormal(ly) collapsed atrium 0.000000 HP:0002683 Abnormality of the calvaria 3.779994 0.539683 1.428284 +HP:0001363 Craniosynostosis 0.000000 ZP:0012066 null 0.000000 ZP:0012066 null 5.711380 0.355932 1.425785 +HP:0001363 Craniosynostosis 0.000000 ZP:0008490 abnormal(ly) disorganized cranial nerve VII 0.000000 HP:0002683 Abnormality of the calvaria 3.779994 0.531250 1.417082 +HP:0001363 Craniosynostosis 0.000000 ZP:0006539 abnormal(ly) functionality cloacal chamber cilium 0.000000 ZP:0012066 null 5.711380 0.350000 1.413854 +HP:0001363 Craniosynostosis 0.000000 ZP:0002315 abnormal(ly) increased size lens 0.000000 ZP:0012066 null 5.711380 0.350000 1.413854 +HP:0001363 Craniosynostosis 0.000000 ZP:0000870 abnormal(ly) absent opercular lateral line neuromast 0.000000 ZP:0012066 null 5.711380 0.350000 1.413854 +HP:0001363 Craniosynostosis 0.000000 ZP:0010247 null 0.000000 ZP:0012066 null 5.711380 0.350000 1.413854 +HP:0001363 Craniosynostosis 0.000000 ZP:0010842 null 0.000000 ZP:0012066 null 5.711380 0.348485 1.410790 +HP:0001363 Craniosynostosis 0.000000 ZP:0007212 abnormal(ly) hemorrhagic pharynx 0.000000 ZP:0012066 null 5.711380 0.344262 1.402217 +HP:0001363 Craniosynostosis 0.000000 ZP:0010772 null 0.000000 HP:0002683 Abnormality of the calvaria 3.779994 0.513514 1.393226 +HP:0001363 Craniosynostosis 0.000000 ZP:0002804 abnormal(ly) present in fewer numbers in organism muscle sarcomere 0.000000 ZP:0012066 null 5.711380 0.333333 1.379780 +HP:0001363 Craniosynostosis 0.000000 ZP:0000119 abnormal(ly) disrupted endochondral ossification 0.000000 ZP:0012066 null 5.711380 0.328125 1.368958 +HP:0001363 Craniosynostosis 0.000000 ZP:0003960 abnormal(ly) displaced pharyngeal arch 1 0.000000 ZP:0012066 null 5.711380 0.328125 1.368958 +HP:0001363 Craniosynostosis 0.000000 ZP:0009445 abnormal(ly) present in fewer numbers in organism head pterinosome 0.000000 ZP:0012066 null 5.711380 0.328125 1.368958 +HP:0001363 Craniosynostosis 0.000000 ZP:0000226 abnormal(ly) delayed ossification involved in bone maturation 0.000000 ZP:0012066 null 5.711380 0.323077 1.358387 +HP:0001363 Craniosynostosis 0.000000 ZP:0011991 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.382353 1.353972 +HP:0001363 Craniosynostosis 0.000000 ZP:0007942 abnormal(ly) undulate lepidotrichium 0.000000 ZP:0012066 null 5.711380 0.318182 1.348057 +HP:0001363 Craniosynostosis 0.000000 ZP:0010649 null 0.000000 ZP:0012066 null 5.711380 0.318182 1.348057 +HP:0001363 Craniosynostosis 0.000000 ZP:0011780 null 0.000000 ZP:0012066 null 5.711380 0.313953 1.339070 +HP:0001363 Craniosynostosis 0.000000 ZP:0002827 abnormal(ly) decreased functionality Kupffer's vesicle motile primary cilium 0.000000 HP:0002683 Abnormality of the calvaria 3.779994 0.466667 1.328155 +HP:0001363 Craniosynostosis 0.000000 ZP:0010764 null 0.000000 HP:0002683 Abnormality of the calvaria 3.779994 0.459459 1.317860 +HP:0001363 Craniosynostosis 0.000000 ZP:0003531 abnormal(ly) disrupted otolith morphogenesis 0.000000 HP:0002683 Abnormality of the calvaria 3.779994 0.454545 1.310793 +HP:0001363 Craniosynostosis 0.000000 ZP:0003530 abnormal(ly) malformed unfertilized egg chorion 0.000000 HP:0002683 Abnormality of the calvaria 3.779994 0.453333 1.309044 +HP:0001363 Craniosynostosis 0.000000 ZP:0012011 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.342105 1.280729 +HP:0001363 Craniosynostosis 0.000000 ZP:0012145 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.340426 1.277581 +HP:0001363 Craniosynostosis 0.000000 ZP:0008385 abnormal(ly) has fewer parts of type levator operculi towards skeletal muscle cell 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.333333 1.264203 +HP:0001363 Craniosynostosis 0.000000 ZP:0002711 abnormal(ly) malformed melanocyte melanosome 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.329114 1.256176 +HP:0001363 Craniosynostosis 0.000000 ZP:0011776 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.317647 1.234098 +HP:0001363 Craniosynostosis 0.000000 ZP:0012143 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.317647 1.234098 +HP:0001363 Craniosynostosis 0.000000 ZP:0012006 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.317073 1.232983 +HP:0001363 Craniosynostosis 0.000000 ZP:0012144 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.313253 1.225533 +HP:0001363 Craniosynostosis 0.000000 ZP:0008895 abnormal(ly) decreased process quality high voltage-gated calcium channel activity 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.312500 1.224059 +HP:0001363 Craniosynostosis 0.000000 ZP:0000888 abnormal(ly) decreased size pharyngeal arch 2 skeleton 0.000000 null UBERON:0011134PHENOTYPE 5.470256 0.273810 1.223850 +HP:0001363 Craniosynostosis 0.000000 ZP:0000887 abnormal(ly) orientation ventral mandibular arch towards eye 0.000000 null UBERON:0011134PHENOTYPE 5.470256 0.273810 1.223850 +HP:0001363 Craniosynostosis 0.000000 ZP:0012142 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.310345 1.219831 +HP:0001363 Craniosynostosis 0.000000 ZP:0012146 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.309524 1.218216 +HP:0001363 Craniosynostosis 0.000000 ZP:0004599 abnormal(ly) circular brain cell 0.000000 null UBERON:0011134PHENOTYPE 5.470256 0.270270 1.215914 +HP:0001363 Craniosynostosis 0.000000 ZP:0006781 abnormal(ly) decreased process quality taxis 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.307692 1.214607 +HP:0001363 Craniosynostosis 0.000000 ZP:0006540 abnormal(ly) decreased speed olfactory epithelium motile cilium 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.307692 1.214607 +HP:0001363 Craniosynostosis 0.000000 ZP:0012002 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.307692 1.214607 +HP:0001363 Craniosynostosis 0.000000 ZP:0012147 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.307692 1.214607 +HP:0001363 Craniosynostosis 0.000000 ZP:0011779 null 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.305882 1.211029 +HP:0001363 Craniosynostosis 0.000000 ZP:0002797 abnormal(ly) decreased speed whole organism 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.303030 1.205370 +HP:0001363 Craniosynostosis 0.000000 ZP:0002715 abnormal(ly) increased occurrence chromosome condensation 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.295455 1.190208 +HP:0001363 Craniosynostosis 0.000000 ZP:0002709 abnormal(ly) necrotic melanocyte 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.295455 1.190208 +HP:0001363 Craniosynostosis 0.000000 ZP:0002637 abnormal(ly) shape intestinal epithelium 0.000000 MP:0008271 abnormal bone ossification 4.794626 0.277778 1.154054 +HP:0001363 Craniosynostosis 0.000000 ZP:0002831 abnormal(ly) degenerate lens 0.000000 MP:0003795 abnormal bone structure 3.353833 0.384615 1.135753 +HP:0001363 Craniosynostosis 0.000000 ZP:0005169 abnormal(ly) present in fewer numbers in organism secondary motor neuron cell body 0.000000 MP:0003795 abnormal bone structure 3.353833 0.379747 1.128542 +HP:0001363 Craniosynostosis 0.000000 ZP:0003967 abnormal(ly) decreased process quality establishment of blood-brain barrier 0.000000 MP:0003795 abnormal bone structure 3.353833 0.375000 1.121467 +HP:0001363 Craniosynostosis 0.000000 ZP:0002836 abnormal(ly) shape eye 0.000000 MP:0003795 abnormal bone structure 3.353833 0.348837 1.081639 +HP:0001363 Craniosynostosis 0.000000 ZP:0002834 abnormal(ly) displaced lens 0.000000 MP:0003795 abnormal bone structure 3.353833 0.337079 1.063252 +HP:0001363 Craniosynostosis 0.000000 ZP:0002819 abnormal(ly) arrested detection of light stimulus involved in visual perception 0.000000 MP:0003795 abnormal bone structure 3.353833 0.333333 1.057329 +HP:0001363 Craniosynostosis 0.000000 ZP:0002820 abnormal(ly) decreased process quality notochord cell development 0.000000 MP:0003795 abnormal bone structure 3.353833 0.330000 1.052029 +HP:0001363 Craniosynostosis 0.000000 ZP:0009676 abnormal(ly) colored trunk xanthophore 0.000000 MP:0003795 abnormal bone structure 3.353833 0.330000 1.052029 +HP:0001363 Craniosynostosis 0.000000 ZP:0002837 abnormal(ly) mislocalised ventrally eye 0.000000 MP:0003795 abnormal bone structure 3.353833 0.329670 1.051503 +HP:0001363 Craniosynostosis 0.000000 ZP:0005165 abnormal(ly) has extra parts of type pars superior ear towards anterior crista 0.000000 MP:0003795 abnormal bone structure 3.353833 0.326733 1.046808 +HP:0001363 Craniosynostosis 0.000000 ZP:0005170 abnormal(ly) disorganized retinal ganglion cell axon 0.000000 MP:0003795 abnormal bone structure 3.353833 0.326087 1.045773 +HP:0001363 Craniosynostosis 0.000000 ZP:0002832 abnormal(ly) hypoplastic lens 0.000000 MP:0003795 abnormal bone structure 3.353833 0.323529 1.041664 +HP:0001363 Craniosynostosis 0.000000 ZP:0000878 abnormal(ly) fused with Meckel's cartilage towards palatoquadrate cartilage 0.000000 MP:0003795 abnormal bone structure 3.353833 0.315789 1.029128 +HP:0001363 Craniosynostosis 0.000000 ZP:0003541 abnormal(ly) structure EVL 0.000000 MP:0003795 abnormal bone structure 3.353833 0.255814 0.926260 +HP:0001363 Craniosynostosis 0.000000 ZP:0003884 abnormal(ly) disrupted intraciliary transport 0.000000 MP:0003795 abnormal bone structure 3.353833 0.250000 0.915674 +HP:0001363 Craniosynostosis 0.000000 ZP:0005166 abnormal(ly) disorganized primary motor neuron axon 0.000000 MP:0003795 abnormal bone structure 3.353833 0.250000 0.915674 +HP:0001363 Craniosynostosis 0.000000 ZP:0002835 abnormal(ly) shape midbrain hindbrain boundary 0.000000 MP:0003795 abnormal bone structure 3.353833 0.246753 0.909708 +HP:0001363 Craniosynostosis 0.000000 ZP:0005163 abnormal(ly) malformed pharyngeal arch 2 skeleton joint 0.000000 MP:0003795 abnormal bone structure 3.353833 0.243902 0.904438 +HP:0001363 Craniosynostosis 0.000000 ZP:0002821 abnormal(ly) decreased process quality epithelial cilium movement involved in determination of left/right asymmetry 0.000000 MP:0003795 abnormal bone structure 3.353833 0.243590 0.903858 +HP:0001363 Craniosynostosis 0.000000 ZP:0003966 abnormal(ly) decreased process quality angiogenesis 0.000000 MP:0003795 abnormal bone structure 3.353833 0.240964 0.898973 +HP:0001363 Craniosynostosis 0.000000 ZP:0007955 abnormal(ly) present in greater numbers in organism brain neuron 0.000000 MP:0003795 abnormal bone structure 3.353833 0.240964 0.898973 +HP:0001363 Craniosynostosis 0.000000 ZP:0007954 abnormal(ly) decreased size extrahepatic duct 0.000000 MP:0003795 abnormal bone structure 3.353833 0.240964 0.898973 +HP:0001363 Craniosynostosis 0.000000 ZP:0007961 abnormal(ly) lacks parts or has fewer parts of type yolk towards granulocyte 0.000000 MP:0003795 abnormal bone structure 3.353833 0.240964 0.898973 +HP:0001363 Craniosynostosis 0.000000 ZP:0002840 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morphology 2.592217 0.276786 0.847047 +HP:0011304 Broad thumb 0.000000 ZP:0007348 abnormal(ly) notched ventral mandibular arch 0.000000 MP:0003723 abnormal long bone morphology 3.565024 0.171171 0.781172 +HP:0011304 Broad thumb 0.000000 ZP:0012192 null 0.000000 MP:0003723 abnormal long bone morphology 3.565024 0.165217 0.767466 +HP:0010055 Broad hallux 0.000000 ZP:0012193 null 0.000000 HP:0002814 Abnormality of the lower limb 2.771061 0.430380 1.092066 +HP:0010055 Broad hallux 0.000000 ZP:0012199 null 0.000000 HP:0002814 Abnormality of the lower limb 2.771061 0.414634 1.071903 +HP:0010055 Broad hallux 0.000000 ZP:0001082 abnormal(ly) physical object quality preoptic area 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.430380 1.063287 +HP:0010055 Broad hallux 0.000000 ZP:0006782 abnormal(ly) curved ventral axis 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.425000 1.056621 +HP:0010055 Broad hallux 0.000000 ZP:0011993 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.425000 1.056621 +HP:0010055 Broad hallux 0.000000 ZP:0000875 abnormal(ly) aplastic Meckel's cartilage 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.425000 1.056621 +HP:0010055 Broad hallux 0.000000 ZP:0000874 abnormal(ly) bent Meckel's cartilage 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.425000 1.056621 +HP:0010055 Broad hallux 0.000000 ZP:0010902 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.425000 1.056621 +HP:0010055 Broad hallux 0.000000 ZP:0008615 abnormal(ly) has fewer parts of type otic vesicle towards otolith 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.419753 1.050078 +HP:0010055 Broad hallux 0.000000 ZP:0011078 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.419753 1.050078 +HP:0010055 Broad hallux 0.000000 ZP:0005162 abnormal(ly) hypoplastic pharyngeal arch 2 skeleton 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.419753 1.050078 +HP:0010055 Broad hallux 0.000000 ZP:0010587 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.414634 1.043656 +HP:0010055 Broad hallux 0.000000 ZP:0003965 abnormal(ly) chromatic property blood 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.414634 1.043656 +HP:0010055 Broad hallux 0.000000 ZP:0009802 abnormal(ly) increased size somite 15 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.414634 1.043656 +HP:0010055 Broad hallux 0.000000 ZP:0001042 abnormal(ly) green pancreas 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.346667 0.954291 +HP:0010055 Broad hallux 0.000000 ZP:0010673 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.329114 0.929818 +HP:0010055 Broad hallux 0.000000 ZP:0012198 null 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.325000 0.923988 +HP:0010055 Broad hallux 0.000000 ZP:0009803 abnormal(ly) fused with somite 15 dorso-medial margin towards somite 15 dorso-medial margin 0.000000 HP:0002817 Abnormality of the upper limb 2.626935 0.317073 0.912650 +HP:0010055 Broad hallux 0.000000 ZP:0007348 abnormal(ly) notched ventral mandibular arch 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.529091 0.197674 0.707062 +HP:0010055 Broad hallux 0.000000 ZP:0012192 null 0.000000 MP:0009250 abnormal appendicular skeleton morphology 2.529091 0.188889 0.691171 \ No newline at end of file diff --git a/exomiser-core/src/test/resources/prioritisers/mouse-models b/exomiser-core/src/test/resources/prioritisers/mouse-models new file mode 100644 index 000000000..63d441e46 --- /dev/null +++ b/exomiser-core/src/test/resources/prioritisers/mouse-models @@ -0,0 +1,42 @@ +MOUSE MGI:2444465_6886 341640 FREM2 MGI:2444465 Frem2 MP:0000564,MP:0005242,MP:0008856,MP:0011101 +MOUSE MGI:2444465_6887 341640 FREM2 MGI:2444465 Frem2 MP:0008854 +MOUSE MGI:2444465_7787 341640 FREM2 MGI:2444465 Frem2 MP:0000018,MP:0000285,MP:0000416,MP:0000432,MP:0000564,MP:0000565,MP:0000929,MP:0001175,MP:0001293,MP:0001297,MP:0001914,MP:0002075,MP:0002109,MP:0002110,MP:0002940,MP:0005579,MP:0009674,MP:0010403,MP:0011088 +MOUSE MGI:2444465_15050 341640 FREM2 MGI:2444465 Frem2 MP:0000022,MP:0000372,MP:0000564,MP:0001297,MP:0001340,MP:0001935,MP:0005242,MP:0008730 +MOUSE MGI:2444465_18173 341640 FREM2 MGI:2444465 Frem2 MP:0000520,MP:0000564,MP:0005242,MP:0008854 +MOUSE MGI:2444465_18183 341640 FREM2 MGI:2444465 Frem2 MP:0000445,MP:0000520,MP:0000564,MP:0000576,MP:0001286,MP:0001672,MP:0001891,MP:0002060,MP:0002109,MP:0002778,MP:0003104,MP:0003743,MP:0003935,MP:0008854,MP:0008855,MP:0009743,MP:0011090 +MOUSE MGI:2444465_24923 341640 FREM2 MGI:2444465 Frem2 MP:0000520,MP:0000562,MP:0000564,MP:0005242 +MOUSE MGI:2444465_28505 341640 FREM2 MGI:2444465 Frem2 MP:0001293,MP:0001297,MP:0003924,MP:0004158 +MOUSE MGI:1347521_1917 4920 ROR2 MGI:1347521 Ror2 MP:0000111,MP:0000137,MP:0000154,MP:0000445,MP:0000547,MP:0000552,MP:0000558,MP:0000559,MP:0000592,MP:0002111,MP:0002113,MP:0002187,MP:0002544,MP:0002759,MP:0002764,MP:0002765,MP:0003055,MP:0003109,MP:0003408,MP:0003419,MP:0003662,MP:0003723,MP:0003856,MP:0004351,MP:0004355,MP:0004359,MP:0004471,MP:0004652,MP:0004703,MP:0004708,MP:0005108,MP:0005296,MP:0005306,MP:0006279,MP:0006280,MP:0008272,MP:0011089 +MOUSE MGI:1347521_4482 4920 ROR2 MGI:1347521 Ror2 MP:0000029,MP:0000060,MP:0000088,MP:0000137,MP:0000150,MP:0000154,MP:0000163,MP:0000164,MP:0000166,MP:0000438,MP:0000441,MP:0000454,MP:0000455,MP:0000458,MP:0000562,MP:0000572,MP:0000592,MP:0001575,MP:0001688,MP:0001691,MP:0001698,MP:0001954,MP:0002109,MP:0002270,MP:0002544,MP:0002982,MP:0003050,MP:0003409,MP:0003662,MP:0003854,MP:0003855,MP:0003856,MP:0003857,MP:0004110,MP:0004355,MP:0004359,MP:0004595,MP:0004596,MP:0004622,MP:0004634,MP:0004657,MP:0004686,MP:0004726,MP:0005105,MP:0005222,MP:0005225,MP:0005587,MP:0008392,MP:0009642,MP:0009886,MP:0009890,MP:0010418,MP:0011087,MP:0011772,MP:0012062 +MOUSE MGI:1347521_12834 4920 ROR2 MGI:1347521 Ror2 MP:0000547,MP:0000592,MP:0005508,MP:0009703 +MOUSE MGI:1347521_14780 4920 ROR2 MGI:1347521 Ror2 MP:0000088,MP:0000102,MP:0000137,MP:0000154,MP:0000164,MP:0000445,MP:0000585,MP:0001153,MP:0001258,MP:0001265,MP:0001349,MP:0001922,MP:0002109,MP:0002110,MP:0002113,MP:0002114,MP:0002216,MP:0002543,MP:0002544,MP:0002687,MP:0002759,MP:0002896,MP:0003047,MP:0003419,MP:0003960,MP:0004173,MP:0004471,MP:0004472,MP:0004619,MP:0004634,MP:0004667,MP:0004852,MP:0005306,MP:0006165,MP:0006210,MP:0006279,MP:0006280,MP:0010025,MP:0010869,MP:0010879 +MOUSE MGI:1347521_14781 4920 ROR2 MGI:1347521 Ror2 MP:0000042,MP:0002543,MP:0002622,MP:0004399 +MOUSE MGI:1347521_23923 4920 ROR2 MGI:1347521 Ror2 MP:0001919,MP:0002081,MP:0002982,MP:0006281,MP:0008392,MP:0008786,MP:0009768,MP:0011610 +MOUSE MGI:1347521_24297 4920 ROR2 MGI:1347521 Ror2 MP:0000547,MP:0003743,MP:0004073 +MOUSE MGI:95523_117 2263 FGFR2 MGI:95523 Fgfr2 MP:0000031,MP:0000035,MP:0000039,MP:0000081,MP:0000111,MP:0000118,MP:0000440,MP:0000470,MP:0000492,MP:0000551,MP:0000557,MP:0000613,MP:0000629,MP:0001176,MP:0001181,MP:0001199,MP:0001201,MP:0001218,MP:0001231,MP:0001244,MP:0001265,MP:0001341,MP:0002095,MP:0002428,MP:0002691,MP:0003051,MP:0003124,MP:0003308,MP:0003315,MP:0003703,MP:0003816,MP:0004310,MP:0004343,MP:0004346,MP:0004507,MP:0004509,MP:0004619,MP:0004691,MP:0005298,MP:0005354,MP:0006011,MP:0006279,MP:0006287,MP:0006288,MP:0008320,MP:0009479,MP:0009509,MP:0009510,MP:0009522,MP:0009524,MP:0011026,MP:0011089,MP:0011158,MP:0011759,MP:0013351,MP:0013352,MP:0013721,MP:0013785 +MOUSE MGI:95523_118 2263 FGFR2 MGI:95523 Fgfr2 MP:0009522,MP:0009525 +MOUSE MGI:95523_656 2263 FGFR2 MGI:95523 Fgfr2 MP:0001698,MP:0001711,MP:0001712,MP:0003231,MP:0003403,MP:0003984,MP:0004255,MP:0004310,MP:0004556,MP:0004573,MP:0005031,MP:0009397,MP:0009657,MP:0011098 +MOUSE MGI:95523_657 2263 FGFR2 MGI:95523 Fgfr2 MP:0001685,MP:0002084,MP:0002663,MP:0003085,MP:0003845,MP:0004965,MP:0011096,MP:0011185 +MOUSE MGI:95523_658 2263 FGFR2 MGI:95523 Fgfr2 MP:0000074,MP:0000081,MP:0000097,MP:0000189,MP:0000440,MP:0000445,MP:0000521,MP:0000596,MP:0001175,MP:0001265,MP:0001347,MP:0001669,MP:0001732,MP:0002267,MP:0002750,MP:0002989,MP:0003641,MP:0004322,MP:0004469,MP:0004505,MP:0004678,MP:0006027,MP:0008277,MP:0009050,MP:0009051,MP:0009570,MP:0010911,MP:0011011,MP:0011085,MP:0011290,MP:0012667 +MOUSE MGI:95523_659 2263 FGFR2 MGI:95523 Fgfr2 MP:0000111,MP:0000124,MP:0000149,MP:0000267,MP:0000273,MP:0000279,MP:0000280,MP:0000284,MP:0000377,MP:0000379,MP:0000527,MP:0000537,MP:0000549,MP:0000613,MP:0000704,MP:0001181,MP:0001199,MP:0001216,MP:0001218,MP:0001231,MP:0001341,MP:0001676,MP:0002060,MP:0002295,MP:0002655,MP:0002989,MP:0003051,MP:0003124,MP:0003420,MP:0003704,MP:0003934,MP:0004032,MP:0004055,MP:0004067,MP:0004200,MP:0004509,MP:0004619,MP:0005294,MP:0005314,MP:0006030,MP:0006288,MP:0008320,MP:0009003,MP:0010418,MP:0010420,MP:0010454,MP:0010521,MP:0010566,MP:0010585,MP:0010587,MP:0010646,MP:0011089,MP:0011290,MP:0013310,MP:0013578 +MOUSE MGI:95523_3186 2263 FGFR2 MGI:95523 Fgfr2 MP:0000762,MP:0003755,MP:0003760,MP:0003934,MP:0004247,MP:0009655,MP:0009884,MP:0009890,MP:0013264,MP:0013766 +MOUSE MGI:95523_4924 2263 FGFR2 MGI:95523 Fgfr2 MP:0001712,MP:0004573,MP:0011098 +MOUSE MGI:95523_5524 2263 FGFR2 MGI:95523 Fgfr2 MP:0000102,MP:0000435,MP:0000440,MP:0001175,MP:0001302,MP:0001953,MP:0002114,MP:0004322,MP:0004552,MP:0004609,MP:0004988,MP:0005006,MP:0005249,MP:0008271,MP:0009250,MP:0009887,MP:0009890,MP:0010029,MP:0011087 +MOUSE MGI:95523_5525 2263 FGFR2 MGI:95523 Fgfr2 MP:0000081,MP:0000097,MP:0000104,MP:0000120,MP:0000435,MP:0000440,MP:0001300,MP:0002750,MP:0004988,MP:0006400 +MOUSE MGI:95523_11328 2263 FGFR2 MGI:95523 Fgfr2 MP:0000081,MP:0000428,MP:0000438,MP:0002750,MP:0003840 +MOUSE MGI:95523_11329 2263 FGFR2 MGI:95523 Fgfr2 MP:0000111,MP:0001943,MP:0003120,MP:0003189,MP:0009888,MP:0011087 +MOUSE MGI:95523_11330 2263 FGFR2 MGI:95523 Fgfr2 MP:0000111,MP:0003120,MP:0009888 +MOUSE MGI:95523_11421 2263 FGFR2 MGI:95523 Fgfr2 MP:0001672,MP:0011096 +MOUSE MGI:95523_11594 2263 FGFR2 MGI:95523 Fgfr2 MP:0013318 +MOUSE MGI:95523_11595 2263 FGFR2 MGI:95523 Fgfr2 MP:0000666,MP:0002059,MP:0004961,MP:0009736,MP:0013317 +MOUSE MGI:95523_13675 2263 FGFR2 MGI:95523 Fgfr2 MP:0004792,MP:0004793,MP:0011087 +MOUSE MGI:95523_18288 2263 FGFR2 MGI:95523 Fgfr2 MP:0000549,MP:0001181,MP:0009524,MP:0011087 +MOUSE MGI:95523_18289 2263 FGFR2 MGI:95523 Fgfr2 MP:0000060,MP:0000081,MP:0000104,MP:0000106,MP:0000432,MP:0000440,MP:0000566,MP:0001262,MP:0001265,MP:0001732,MP:0002116,MP:0002750,MP:0003409,MP:0003840,MP:0004448,MP:0005006,MP:0008489,MP:0008525,MP:0010029 +MOUSE MGI:95523_18293 2263 FGFR2 MGI:95523 Fgfr2 MP:0000537,MP:0000549 +MOUSE MGI:95523_20249 2263 FGFR2 MGI:95523 Fgfr2 MP:0000081,MP:0000780,MP:0002152,MP:0008534,MP:0008535,MP:0008540 +MOUSE MGI:95523_21075 2263 FGFR2 MGI:95523 Fgfr2 MP:0000060,MP:0000106,MP:0000118,MP:0000137,MP:0000157,MP:0000159,MP:0000163,MP:0000166,MP:0000438,MP:0000445,MP:0000462,MP:0000549,MP:0000762,MP:0000774,MP:0001347,MP:0001677,MP:0001698,MP:0001954,MP:0002058,MP:0002239,MP:0002750,MP:0002835,MP:0002989,MP:0003641,MP:0003938,MP:0004247,MP:0004320,MP:0004377,MP:0004418,MP:0004449,MP:0004469,MP:0004537,MP:0004609,MP:0004620,MP:0004726,MP:0004989,MP:0006213,MP:0006279,MP:0008272,MP:0008785,MP:0009524,MP:0009653,MP:0010743,MP:0011011 +MOUSE MGI:95523_21076 2263 FGFR2 MGI:95523 Fgfr2 MP:0000081,MP:0000106,MP:0000120,MP:0000157,MP:0000166,MP:0000428,MP:0000440,MP:0000445,MP:0001698,MP:0002239,MP:0002835,MP:0003840,MP:0003938,MP:0004449,MP:0004831,MP:0004989,MP:0008272,MP:0008525,MP:0009703,MP:0009887,MP:0009890 +MOUSE MGI:95523_25785 2263 FGFR2 MGI:95523 Fgfr2 MP:0000081,MP:0000157,MP:0000435,MP:0000566,MP:0001219,MP:0001222,MP:0001231,MP:0001240,MP:0001725,MP:0001732,MP:0001874,MP:0002060,MP:0003743,MP:0009545,MP:0009601,MP:0009611,MP:0011085,MP:0011495 +MOUSE MGI:95523_28391 2263 FGFR2 MGI:95523 Fgfr2 MP:0000549,MP:0001178,MP:0002995,MP:0006208 +MOUSE MGI:95523_28392 2263 FGFR2 MGI:95523 Fgfr2 MP:0000549,MP:0001178,MP:0002995,MP:0004200 +MOUSE MGI:95523_28526 2263 FGFR2 MGI:95523 Fgfr2 MP:0002059 \ No newline at end of file diff --git a/exomiser-core/src/test/resources/sql/create_entrez2sym.sql b/exomiser-core/src/test/resources/sql/create_entrez2sym.sql new file mode 100644 index 000000000..62eff0872 --- /dev/null +++ b/exomiser-core/src/test/resources/sql/create_entrez2sym.sql @@ -0,0 +1,6 @@ +DROP TABLE IF EXISTS entrez2sym; + +CREATE TABLE entrez2sym ( + entrezID integer PRIMARY KEY, + symbol character varying(24) +); diff --git a/exomiser-core/src/test/resources/sql/diseaseDaoTestData.sql b/exomiser-core/src/test/resources/sql/diseaseDaoTestData.sql index ee89f602a..cf0904d41 100644 --- a/exomiser-core/src/test/resources/sql/diseaseDaoTestData.sql +++ b/exomiser-core/src/test/resources/sql/diseaseDaoTestData.sql @@ -4,4 +4,8 @@ insert into disease values insert into disease_hp values -('OMIM:101600', 'HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304'); \ No newline at end of file +('OMIM:101600', 'HP:0000174,HP:0000194,HP:0000218,HP:0000238,HP:0000244,HP:0000272,HP:0000303,HP:0000316,HP:0000322,HP:0000324,HP:0000327,HP:0000348,HP:0000431,HP:0000452,HP:0000453,HP:0000470,HP:0000486,HP:0000494,HP:0000508,HP:0000586,HP:0000678,HP:0001156,HP:0001249,HP:0002308,HP:0002676,HP:0002780,HP:0003041,HP:0003070,HP:0003196,HP:0003272,HP:0003307,HP:0003795,HP:0004209,HP:0004322,HP:0004440,HP:0005048,HP:0005280,HP:0005347,HP:0006101,HP:0006110,HP:0009602,HP:0009773,HP:0010055,HP:0010669,HP:0011304'); + +insert into ENTREZ2SYM VALUES +(2263, 'FGFR2'), +(2260, 'FGFR1'); \ No newline at end of file diff --git a/exomiser-db/.mvn/wrapper/maven-wrapper.jar b/exomiser-db/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-db/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-db/.mvn/wrapper/maven-wrapper.properties b/exomiser-db/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/exomiser-db/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/exomiser-db/README.md b/exomiser-db/README.md index 888c91e40..60cdffd40 100644 --- a/exomiser-db/README.md +++ b/exomiser-db/README.md @@ -17,6 +17,11 @@ can be performed from an IDE or the command-line using the appropriate maven profile, for example: mvn -P migrate-H2 flyway:info + +or specified from the command-line: + + java -jar exomiser-db-${project.version}.jar --exomiser.h2.url="jdbc:h2:file:/data/exomiser-build/exomiser;MODE=Postg + reSQL;LOG=0;CACHE_SIZE=65536;LOCK_MODE=0;UNDO_LOG=0;MV_STORE=FALSE" --data.path=/data/exomiser-build/ In order for this to work the settings in the POM file may need to be changed. These won't work without any data to import which is what App.main is all about. @@ -25,15 +30,15 @@ Running the application from App.main requires that the files in src/main/resour are correctly configured. These files and other configurations are injected into the application by the classes in the exomiser.config package: -* de.charite.compbio.exomiser.config.AppConfig +* org.monarchinitiative.exomiser.config.AppConfig Injects the data from the app.properties -* de.charite.compbio.exomiser.config.DataSourceConfig +* org.monarchinitiative.exomiser.config.DataSourceConfig Injects the DataSources for the database connections -* de.charite.compbio.exomiser.config.ResourceConfig +* org.monarchinitiative.exomiser.config.ResourceConfig Injects the Resources - these specify where the data should be downloaded from, how it should be handled in order that the parser can parse it, what parser @@ -44,37 +49,52 @@ Commenting out a resource means it won't be processed. If the resource was part of a parserGroup then that entire group will not be handled and ultimately the database build will halt at the migration of the resource or group's parsedFileName. +The application can also be run from the command line. The full download, unpack, parse and load database looks like so: + +```bash +java -jar exomiser-db-${project.version}-SNAPSHOT.jar + --data.path=/data/exomiser-build/data + --downloadResources=true + --extractResources=true + --parseResources=true + --dumpPhenoDigmData=true + --migrateH2=true + --exomiser.h2.url="jdbc:h2:file:/data/exomiser-build/exomiser;MODE=PostgreSQL;LOG=0;CACHE_SIZE=65536;LOCK_MODE=0;UNDO_LOG=0;MV_STORE=FALSE" +``` +These are overriding the properties in ```app.properties``` which default to false. The ```exomiser.h2.url``` overrides the database properties in ```jdbc.properties```. + + In general you shouldn't need to touch anything but, in case you do the resources are detailed below and check the log output: -# src/main/resources +## src/main/resources -* app.properties +### app.properties This will provide the application with the location of where you want it to run, download, unpack and process the resources. The resources are described in the exomiser.config.ResourceConfig class. -* jdbc.properties +### jdbc.properties Contains the database connection settings for jdbc used by Flyway when called from App.main. -# src/main/resources/data +## src/main/resources/data This is where some static data required by some parsers but which requires manual processing to produce is stored. The resources are referred to in the exomiser.config.ResourceConfig class but are moved into the process directory by spring. -* pheno2gene.txt +### pheno2gene.txt This requires extensive messing about with a one-off dump-file from OMIM, a perl parser, data from Entrez Gene and some java parsing. Given this was a one-off it seemed best to just include the final processed file which can be updated whenever appropriate. -* ucsc_hg19.ser.gz +### ucsc_hg19.ser Requires the following UCSC known genes files - these are defined and downloaded as resources so they will be found, ready to use in data/extracted: @@ -93,16 +113,16 @@ or... java -Xms1G -Xmx2G -jar Jannovar.jar --create-ucsc -# src/main/resources/db/migration +## src/main/resources/db/migration Contains the database schema and the import sql files for the H2 database. The PostgreSQL migrations are run by Flyway as java migrations. Consequently they are found in src/main/java/db/migration/postgres. -# Adding a Resource +## Adding a Resource -* Add a new Bean to de.charite.compbio.exomiser.config.ResourceConfig and ensure +* Add a new Bean to org.monarchinitiative.exomiser.config.ResourceConfig and ensure this is loaded in the ResourceConfig.resources() method. * Add a new Parser and or ParserGroup if there are several parsers which need to diff --git a/exomiser-db/mvnw b/exomiser-db/mvnw new file mode 100644 index 000000000..5bf251c07 --- /dev/null +++ b/exomiser-db/mvnw @@ -0,0 +1,225 @@ +#!/bin/sh +# ---------------------------------------------------------------------------- +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +# ---------------------------------------------------------------------------- + +# ---------------------------------------------------------------------------- +# Maven2 Start Up Batch script +# +# Required ENV vars: +# ------------------ +# JAVA_HOME - location of a JDK home dir +# +# Optional ENV vars +# ----------------- +# M2_HOME - location of maven2's installed home dir +# MAVEN_OPTS - parameters passed to the Java VM when running Maven +# e.g. to debug Maven itself, use +# set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +# MAVEN_SKIP_RC - flag to disable loading of mavenrc files +# ---------------------------------------------------------------------------- + +if [ -z "$MAVEN_SKIP_RC" ] ; then + + if [ -f /etc/mavenrc ] ; then + . /etc/mavenrc + fi + + if [ -f "$HOME/.mavenrc" ] ; then + . "$HOME/.mavenrc" + fi + +fi + +# OS specific support. $var _must_ be set to either true or false. +cygwin=false; +darwin=false; +mingw=false +case "`uname`" in + CYGWIN*) cygwin=true ;; + MINGW*) mingw=true;; + Darwin*) darwin=true + # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home + # See https://developer.apple.com/library/mac/qa/qa1170/_index.html + if [ -z "$JAVA_HOME" ]; then + if [ -x "/usr/libexec/java_home" ]; then + export JAVA_HOME="`/usr/libexec/java_home`" + else + export JAVA_HOME="/Library/Java/Home" + fi + fi + ;; +esac + +if [ -z "$JAVA_HOME" ] ; then + if [ -r /etc/gentoo-release ] ; then + JAVA_HOME=`java-config --jre-home` + fi +fi + +if [ -z "$M2_HOME" ] ; then + ## resolve links - $0 may be a link to maven's home + PRG="$0" + + # need this for relative symlinks + while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG="`dirname "$PRG"`/$link" + fi + done + + saveddir=`pwd` + + M2_HOME=`dirname "$PRG"`/.. + + # make it fully qualified + M2_HOME=`cd "$M2_HOME" && pwd` + + cd "$saveddir" + # echo Using m2 at $M2_HOME +fi + +# For Cygwin, ensure paths are in UNIX format before anything is touched +if $cygwin ; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --unix "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --unix "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --unix "$CLASSPATH"` +fi + +# For Migwn, ensure paths are in UNIX format before anything is touched +if $mingw ; then + [ -n "$M2_HOME" ] && + M2_HOME="`(cd "$M2_HOME"; pwd)`" + [ -n "$JAVA_HOME" ] && + JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`" + # TODO classpath? +fi + +if [ -z "$JAVA_HOME" ]; then + javaExecutable="`which javac`" + if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then + # readlink(1) is not available as standard on Solaris 10. + readLink=`which readlink` + if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then + if $darwin ; then + javaHome="`dirname \"$javaExecutable\"`" + javaExecutable="`cd \"$javaHome\" && pwd -P`/javac" + else + javaExecutable="`readlink -f \"$javaExecutable\"`" + fi + javaHome="`dirname \"$javaExecutable\"`" + javaHome=`expr "$javaHome" : '\(.*\)/bin'` + JAVA_HOME="$javaHome" + export JAVA_HOME + fi + fi +fi + +if [ -z "$JAVACMD" ] ; then + if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + else + JAVACMD="`which java`" + fi +fi + +if [ ! -x "$JAVACMD" ] ; then + echo "Error: JAVA_HOME is not defined correctly." >&2 + echo " We cannot execute $JAVACMD" >&2 + exit 1 +fi + +if [ -z "$JAVA_HOME" ] ; then + echo "Warning: JAVA_HOME environment variable is not set." +fi + +CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher + +# traverses directory structure from process work directory to filesystem root +# first directory with .mvn subdirectory is considered project base directory +find_maven_basedir() { + + if [ -z "$1" ] + then + echo "Path not specified to find_maven_basedir" + return 1 + fi + + basedir="$1" + wdir="$1" + while [ "$wdir" != '/' ] ; do + if [ -d "$wdir"/.mvn ] ; then + basedir=$wdir + break + fi + # workaround for JBEAP-8937 (on Solaris 10/Sparc) + if [ -d "${wdir}" ]; then + wdir=`cd "$wdir/.."; pwd` + fi + # end of workaround + done + echo "${basedir}" +} + +# concatenates all lines of a file +concat_lines() { + if [ -f "$1" ]; then + echo "$(tr -s '\n' ' ' < "$1")" + fi +} + +BASE_DIR=`find_maven_basedir "$(pwd)"` +if [ -z "$BASE_DIR" ]; then + exit 1; +fi + +export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"} +echo $MAVEN_PROJECTBASEDIR +MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS" + +# For Cygwin, switch paths to Windows format before running java +if $cygwin; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --path --windows "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --windows "$CLASSPATH"` + [ -n "$MAVEN_PROJECTBASEDIR" ] && + MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"` +fi + +WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +exec "$JAVACMD" \ + $MAVEN_OPTS \ + -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \ + "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \ + ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@" diff --git a/exomiser-db/mvnw.cmd b/exomiser-db/mvnw.cmd new file mode 100644 index 000000000..019bd74d7 --- /dev/null +++ b/exomiser-db/mvnw.cmd @@ -0,0 +1,143 @@ +@REM ---------------------------------------------------------------------------- +@REM Licensed to the Apache Software Foundation (ASF) under one +@REM or more contributor license agreements. See the NOTICE file +@REM distributed with this work for additional information +@REM regarding copyright ownership. The ASF licenses this file +@REM to you under the Apache License, Version 2.0 (the +@REM "License"); you may not use this file except in compliance +@REM with the License. You may obtain a copy of the License at +@REM +@REM http://www.apache.org/licenses/LICENSE-2.0 +@REM +@REM Unless required by applicable law or agreed to in writing, +@REM software distributed under the License is distributed on an +@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +@REM KIND, either express or implied. See the License for the +@REM specific language governing permissions and limitations +@REM under the License. +@REM ---------------------------------------------------------------------------- + +@REM ---------------------------------------------------------------------------- +@REM Maven2 Start Up Batch script +@REM +@REM Required ENV vars: +@REM JAVA_HOME - location of a JDK home dir +@REM +@REM Optional ENV vars +@REM M2_HOME - location of maven2's installed home dir +@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands +@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a key stroke before ending +@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven +@REM e.g. to debug Maven itself, use +@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files +@REM ---------------------------------------------------------------------------- + +@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on' +@echo off +@REM enable echoing my setting MAVEN_BATCH_ECHO to 'on' +@if "%MAVEN_BATCH_ECHO%" == "on" echo %MAVEN_BATCH_ECHO% + +@REM set %HOME% to equivalent of $HOME +if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%") + +@REM Execute a user defined script before this one +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre +@REM check for pre script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat" +if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd" +:skipRcPre + +@setlocal + +set ERROR_CODE=0 + +@REM To isolate internal variables from possible post scripts, we use another setlocal +@setlocal + +@REM ==== START VALIDATION ==== +if not "%JAVA_HOME%" == "" goto OkJHome + +echo. +echo Error: JAVA_HOME not found in your environment. >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +:OkJHome +if exist "%JAVA_HOME%\bin\java.exe" goto init + +echo. +echo Error: JAVA_HOME is set to an invalid directory. >&2 +echo JAVA_HOME = "%JAVA_HOME%" >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +@REM ==== END VALIDATION ==== + +:init + +@REM Find the project base dir, i.e. the directory that contains the folder ".mvn". +@REM Fallback to current working directory if not found. + +set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR% +IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir + +set EXEC_DIR=%CD% +set WDIR=%EXEC_DIR% +:findBaseDir +IF EXIST "%WDIR%"\.mvn goto baseDirFound +cd .. +IF "%WDIR%"=="%CD%" goto baseDirNotFound +set WDIR=%CD% +goto findBaseDir + +:baseDirFound +set MAVEN_PROJECTBASEDIR=%WDIR% +cd "%EXEC_DIR%" +goto endDetectBaseDir + +:baseDirNotFound +set MAVEN_PROJECTBASEDIR=%EXEC_DIR% +cd "%EXEC_DIR%" + +:endDetectBaseDir + +IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig + +@setlocal EnableExtensions EnableDelayedExpansion +for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a +@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS% + +:endReadAdditionalConfig + +SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe" + +set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar" +set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %* +if ERRORLEVEL 1 goto error +goto end + +:error +set ERROR_CODE=1 + +:end +@endlocal & set ERROR_CODE=%ERROR_CODE% + +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost +@REM check for post script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat" +if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd" +:skipRcPost + +@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on' +if "%MAVEN_BATCH_PAUSE%" == "on" pause + +if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE% + +exit /B %ERROR_CODE% diff --git a/exomiser-db/nbactions.xml b/exomiser-db/nbactions.xml deleted file mode 100644 index 0ff6685e0..000000000 --- a/exomiser-db/nbactions.xml +++ /dev/null @@ -1,57 +0,0 @@ - - - - CUSTOM-flyway:migrate - flyway:migrate - - compile - flyway:migrate - - - - - CUSTOM-flyway:repair - flyway:repair - - compile - flyway:repair - - - - run - - process-classes - org.codehaus.mojo:exec-maven-plugin:1.2:exec - - - -Xms14g -Xmx15g -classpath %classpath de.charite.compbio.exomiser.db.Main - java - runtime - - - - debug - - process-classes - org.codehaus.mojo:exec-maven-plugin:1.2:exec - - - -Xdebug -Xrunjdwp:transport=dt_socket,server=n,address=${jpda.address} -Xms14g -Xmx15g -classpath %classpath de.charite.compbio.exomiser.db.Main - java - runtime - true - - - - profile - - process-classes - org.codehaus.mojo:exec-maven-plugin:1.2:exec - - - ${profiler.args} -Xms14g -Xmx15g -classpath %classpath de.charite.compbio.exomiser.db.Main - ${profiler.java} - profile - - - diff --git a/exomiser-db/pom.xml b/exomiser-db/pom.xml index 17e16b97d..879ffbfe8 100644 --- a/exomiser-db/pom.xml +++ b/exomiser-db/pom.xml @@ -28,9 +28,9 @@ http://maven.apache.org - de.charite.compbio - Exomiser - 7.2.3 + org.monarchinitiative + exomiser + 8.0.0 @@ -43,7 +43,8 @@ migrate-H2 - jdbc:h2:file:data/exomiser;MODE=PostgreSQL;LOG=0;CACHE_SIZE=65536;LOCK_MODE=0;UNDO_LOG=0; + jdbc:h2:file:data/exomiser;MODE=PostgreSQL;LOG=0;CACHE_SIZE=65536;LOCK_MODE=0;UNDO_LOG=0;MV_STORE=FALSE; + sa db.migration.h2 @@ -62,14 +63,20 @@ - de.charite.compbio + org.monarchinitiative exomiser-core ${project.version} + + org.springframework.boot + spring-boot-autoconfigure + ${spring-boot.version} + org.flywaydb flyway-core + 4.2.0 mysql @@ -86,69 +93,33 @@ jannovar-core ${jannovar.version} - - - com.esotericsoftware.yamlbeans - yamlbeans - 1.06 - org.apache.commons commons-vfs2 2.0 - - commons-io - commons-io - 2.4 - jar - - - commons-httpclient - commons-httpclient - 3.1 - jar - - - commons-net - commons-net - 3.3 - - - - joda-time - joda-time - - - javax.inject - javax.inject - 1 - jar - + + + src/main/resources + + true + + - org.codehaus.mojo - exec-maven-plugin - 1.2.1 + org.springframework.boot + spring-boot-maven-plugin + ${spring-boot.version} - exec + repackage - - de.charite.compbio.exomiser.db.Main - - ${project.build.dir} - - org.flywaydb diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_11__Insert_human2fish_ortholog.java b/exomiser-db/src/main/java/db/migration/postgres/V1_11__Insert_human2fish_ortholog.java index db90c0927..dfe567173 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_11__Insert_human2fish_ortholog.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_11__Insert_human2fish_ortholog.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_12__Insert_orphanet.java b/exomiser-db/src/main/java/db/migration/postgres/V1_12__Insert_orphanet.java index 3101ae638..dd713d5e5 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_12__Insert_orphanet.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_12__Insert_orphanet.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_13__Insert_zp.java b/exomiser-db/src/main/java/db/migration/postgres/V1_13__Insert_zp.java index 5944837b7..4031fee1c 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_13__Insert_zp.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_13__Insert_zp.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_14__Insert_zfin_zp.java b/exomiser-db/src/main/java/db/migration/postgres/V1_14__Insert_zfin_zp.java index 9c018617d..5fccda797 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_14__Insert_zfin_zp.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_14__Insert_zfin_zp.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_15__Insert_hp_zp_mapping.java b/exomiser-db/src/main/java/db/migration/postgres/V1_15__Insert_hp_zp_mapping.java index af9f537a8..7164dee4e 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_15__Insert_hp_zp_mapping.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_15__Insert_hp_zp_mapping.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_1__Insert_mp.java b/exomiser-db/src/main/java/db/migration/postgres/V1_1__Insert_mp.java index 9186a2053..73952248f 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_1__Insert_mp.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_1__Insert_mp.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_2__Insert_omim_terms.java b/exomiser-db/src/main/java/db/migration/postgres/V1_2__Insert_omim_terms.java index 680a2d7a4..c8bea1039 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_2__Insert_omim_terms.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_2__Insert_omim_terms.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_3__Insert_human2mouse_ortholog.java b/exomiser-db/src/main/java/db/migration/postgres/V1_3__Insert_human2mouse_ortholog.java index edc5250ab..80a41b676 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_3__Insert_human2mouse_ortholog.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_3__Insert_human2mouse_ortholog.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_4__Insert_mgi_mp.java b/exomiser-db/src/main/java/db/migration/postgres/V1_4__Insert_mgi_mp.java index a6f600e21..bd5ad4339 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_4__Insert_mgi_mp.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_4__Insert_mgi_mp.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_5__Insert_disease_hp_mapping.java b/exomiser-db/src/main/java/db/migration/postgres/V1_5__Insert_disease_hp_mapping.java index 7606c0a96..2bbe93fe4 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_5__Insert_disease_hp_mapping.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_5__Insert_disease_hp_mapping.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_7__Insert_hp_hp_mapping.java b/exomiser-db/src/main/java/db/migration/postgres/V1_7__Insert_hp_hp_mapping.java index f99e80c18..2aba97488 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_7__Insert_hp_hp_mapping.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_7__Insert_hp_hp_mapping.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V1_9__Insert_hp_mp_mapping.java b/exomiser-db/src/main/java/db/migration/postgres/V1_9__Insert_hp_mp_mapping.java index 4c5ded344..6db09be28 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V1_9__Insert_hp_mp_mapping.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V1_9__Insert_hp_mp_mapping.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_0__Insert_frequency.java b/exomiser-db/src/main/java/db/migration/postgres/V2_0__Insert_frequency.java index b9d5e6a29..44e9c8a2d 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_0__Insert_frequency.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_0__Insert_frequency.java @@ -1,30 +1,32 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_10__Insert_fantom_regulatory_features.java b/exomiser-db/src/main/java/db/migration/postgres/V2_10__Insert_fantom_regulatory_features.java index eb0ca6a5b..bea7a570e 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_10__Insert_fantom_regulatory_features.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_10__Insert_fantom_regulatory_features.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing metadata data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_11__Insert_ensembl_regulatory_features.java b/exomiser-db/src/main/java/db/migration/postgres/V2_11__Insert_ensembl_regulatory_features.java index 682bead98..dc2d5eb60 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_11__Insert_ensembl_regulatory_features.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_11__Insert_ensembl_regulatory_features.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing metadata data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_12__Insert_tad.java b/exomiser-db/src/main/java/db/migration/postgres/V2_12__Insert_tad.java index 5f93b113f..62355cc3b 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_12__Insert_tad.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_12__Insert_tad.java @@ -1,30 +1,32 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing metadata data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_1__Insert_hpo.java b/exomiser-db/src/main/java/db/migration/postgres/V2_1__Insert_hpo.java index 2e7ca94b3..6bba9da65 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_1__Insert_hpo.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_1__Insert_hpo.java @@ -1,30 +1,32 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_2__Insert_clinvar.java b/exomiser-db/src/main/java/db/migration/postgres/V2_2__Insert_clinvar.java index 5a49341d2..bf652026b 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_2__Insert_clinvar.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_2__Insert_clinvar.java @@ -1,30 +1,32 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_3__Insert_omim.java b/exomiser-db/src/main/java/db/migration/postgres/V2_3__Insert_omim.java index 1a714be14..078f487d3 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_3__Insert_omim.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_3__Insert_omim.java @@ -1,30 +1,32 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_4__Insert_variant.java b/exomiser-db/src/main/java/db/migration/postgres/V2_4__Insert_variant.java index d27a7bb48..003d8ba4c 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_4__Insert_variant.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_4__Insert_variant.java @@ -1,30 +1,32 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_5__Insert_phenoseries.java b/exomiser-db/src/main/java/db/migration/postgres/V2_5__Insert_phenoseries.java index 04daffee0..243faaca1 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_5__Insert_phenoseries.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_5__Insert_phenoseries.java @@ -1,31 +1,33 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing phenoseries data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_6__Insert_omim2gene.java b/exomiser-db/src/main/java/db/migration/postgres/V2_6__Insert_omim2gene.java index ad8b27806..24fa35657 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_6__Insert_omim2gene.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_6__Insert_omim2gene.java @@ -1,31 +1,33 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing omim2gene data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_7__Insert_entrez2sym.java b/exomiser-db/src/main/java/db/migration/postgres/V2_7__Insert_entrez2sym.java index 133bbe97b..1997fdf16 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_7__Insert_entrez2sym.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_7__Insert_entrez2sym.java @@ -1,31 +1,33 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing omim2gene data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_8__Insert_string.java b/exomiser-db/src/main/java/db/migration/postgres/V2_8__Insert_string.java index f27bd2187..101fb454f 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_8__Insert_string.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_8__Insert_string.java @@ -1,31 +1,33 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing omim2gene data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/db/migration/postgres/V2_9__Insert_metadata.java b/exomiser-db/src/main/java/db/migration/postgres/V2_9__Insert_metadata.java index 3b5eda668..9b59f49e2 100644 --- a/exomiser-db/src/main/java/db/migration/postgres/V2_9__Insert_metadata.java +++ b/exomiser-db/src/main/java/db/migration/postgres/V2_9__Insert_metadata.java @@ -1,20 +1,21 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ /* @@ -26,11 +27,12 @@ package db.migration.postgres; import org.flywaydb.core.api.migration.jdbc.JdbcMigration; -import java.io.FileReader; -import java.sql.Connection; import org.postgresql.copy.CopyManager; import org.postgresql.core.BaseConnection; +import java.io.FileReader; +import java.sql.Connection; + /** * Flyway java migration for importing metadata data into the exomiser PostgreSQL instance. * diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/Main.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/Main.java deleted file mode 100644 index f14656859..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/Main.java +++ /dev/null @@ -1,157 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.db; - -import org.flywaydb.core.Flyway; -import de.charite.compbio.exomiser.db.config.AppConfig; -import de.charite.compbio.exomiser.db.config.DataSourceConfig; -import de.charite.compbio.exomiser.db.config.ResourceConfig; -import de.charite.compbio.exomiser.db.io.PhenodigmDataDumper; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceDownloadHandler; -import de.charite.compbio.exomiser.db.resources.ResourceExtractionHandler; -import de.charite.compbio.exomiser.db.resources.ResourceParserHandler; -import java.nio.file.Path; -import java.util.HashMap; -import java.util.Map; -import java.util.Set; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.context.annotation.AnnotationConfigApplicationContext; - -/** - * Main class for building the exomiser database. This will attempt to download - * and process the resources specified in the app.properties file. - * {@code de.charite.compbio.exomiser.config.ResourceConfig}. - * - */ -public class Main { - - private static final Logger logger = LoggerFactory.getLogger(Main.class); - - public static void main(String[] args) { - //Get Spring to sort it's shit out... - AnnotationConfigApplicationContext context = new AnnotationConfigApplicationContext(AppConfig.class, ResourceConfig.class, DataSourceConfig.class); - - AppConfig appConfig = context.getBean(AppConfig.class); - //set the Paths - Path dataPath = appConfig.dataPath(); - Path downloadPath = appConfig.downloadPath(); - - //Get the Resources from the ResourceConfiguration - ResourceConfig resourceConfig = context.getBean(ResourceConfig.class); - - Set externalResources = resourceConfig.resources(); - - //Download the Resources - boolean downloadResources = appConfig.downloadResources(); - if (downloadResources) { - //download and unzip the necessary input files - logger.info("Downloading required flatfiles..."); - ResourceDownloadHandler.downloadResources(externalResources, downloadPath); - } else { - logger.info("Skipping download of external resource files."); - } - //Path for processing the downloaded files to prepare them for parsing (i.e. unzip, untar) - Path proccessPath = appConfig.processPath(); - - //Extract the Resources - boolean extractResources = appConfig.extractResources(); - if (extractResources) { - //process the downloaded files to prepare them for parsing (i.e. unzip, untar) - logger.info("Extracting required flatfiles..."); - ResourceExtractionHandler.extractResources(externalResources, downloadPath, proccessPath); - } else { - logger.info("Skipping extraction of external resource files."); - } - - //Parse the Resources - boolean parseResources = appConfig.parseResources(); - if (parseResources) { - //parse the file and output to the project output dir. - logger.info("Parsing resource files..."); - ResourceParserHandler.parseResources(externalResources, proccessPath, dataPath); - - } else { - logger.info("Skipping parsing of external resource files."); - } - - logger.info("Statuses for external resources:"); - for (Resource resource : externalResources) { - logger.info(resource.getStatus()); - } - - //dump Phenodigm data to flatfiles for import - boolean dumpPhenoDigmData = appConfig.dumpPhenoDigmData(); - if (dumpPhenoDigmData) { - logger.info("Making Phenodigm data dump files..."); - PhenodigmDataDumper phenoDumper = context.getBean(PhenodigmDataDumper.class); - phenoDumper.dumpPhenodigmData(dataPath); - } else { - logger.info("Skipping making Phenodigm data dump files."); - } - - //create variables which would otherwise be injected manually from the context - DataSourceConfig dataSourceConfig = context.getBean(DataSourceConfig.class); - logger.info("Migrating exomiser databases..."); - //define where the data import path is otherwise everything will fail - Map propertyPlaceHolders = new HashMap<>(); - propertyPlaceHolders.put("import.path", dataPath.toString()); - - boolean migratePostgres = appConfig.migratePostgres(); - if (migratePostgres) { - DataSource postgresDataSource = dataSourceConfig.exomiserPostgresDataSource(); - migratePostgreSqlDatabase(postgresDataSource, propertyPlaceHolders); - } else { - logger.info("Skipping migration of PostgreSQL database."); - } - - boolean migrateH2 = appConfig.migrateH2(); - if (migrateH2) { - DataSource h2DataSource = dataSourceConfig.exomiserH2DataSource(); - migrateH2Database(h2DataSource, propertyPlaceHolders); - } else { - logger.info("Skipping migration of H2 database."); - } - } - - private static void migratePostgreSqlDatabase(DataSource dataSource, Map propertyPlaceHolders) { - logger.info("Migrating exomiser PostgreSQL database..."); - Flyway postgresqlFlyway = new Flyway(); - postgresqlFlyway.setDataSource(dataSource); - postgresqlFlyway.setSchemas("EXOMISER"); - postgresqlFlyway.setLocations("db/migration/common", "db/migration/postgres"); - postgresqlFlyway.setPlaceholders(propertyPlaceHolders); - postgresqlFlyway.clean(); - postgresqlFlyway.migrate(); - } - - private static void migrateH2Database(DataSource h2DataSource, Map propertyPlaceHolders) { - logger.info("Migrating exomiser H2 database..."); - Flyway h2Flyway = new Flyway(); - h2Flyway.setDataSource(h2DataSource); - h2Flyway.setSchemas("EXOMISER"); - h2Flyway.setLocations("db/migration/common", "db/migration/h2"); - h2Flyway.setPlaceholders(propertyPlaceHolders); - h2Flyway.clean(); - h2Flyway.migrate(); - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/AppConfig.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/AppConfig.java deleted file mode 100644 index 58dcf46fe..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/AppConfig.java +++ /dev/null @@ -1,133 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.db.config; - -import de.charite.compbio.exomiser.db.io.PhenodigmDataDumper; -import java.io.IOException; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.nio.file.StandardCopyOption; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.PropertySource; -import org.springframework.core.env.Environment; - -/** - * Provides configuration details from the app.properties file located in the - * classpath. - * - * @author Jules Jacobsen - */ -@Configuration -@PropertySource({"classpath:app.properties"}) -public class AppConfig { - - static final Logger logger = LoggerFactory.getLogger(AppConfig.class); - - @Autowired - Environment env; - - @Bean - public PhenodigmDataDumper phenodigmDataDumper() { - return new PhenodigmDataDumper(); - } - - @Bean - public Path dataPath() { - Path dataPath = Paths.get(env.getProperty("data.path")); - logger.info("Root data working directory set to: {}", dataPath.toAbsolutePath()); - //this is needed for anything to work correctly, so make sure it exists. - if (dataPath.toFile().mkdir()) { - logger.info("Made new data directory: {}", dataPath.toAbsolutePath()); - } - return dataPath; - } - - @Bean - public Path downloadPath() { - Path downloadPath = Paths.get(dataPath().toString(), env.getProperty("download.path")); - logger.info("Data download directory set to: {}", downloadPath.toAbsolutePath()); - //this is needed for anything to work correctly, so make sure it exists. - if (downloadPath.toFile().mkdir()) { - logger.info("Made new download directory: {}", downloadPath.toAbsolutePath()); - } - return downloadPath; - } - - /** - * Dirty hack to copy the static data into the data directory. - * @return - */ - @Bean - public boolean copyPheno2GeneResource() { - - String resource = "src/main/resources/data/pheno2gene.txt"; - try { - Files.copy(Paths.get(resource), downloadPath().resolve("pheno2gene.txt"), StandardCopyOption.REPLACE_EXISTING); - logger.info("Copied {} to {}", resource, downloadPath()); - } catch (IOException ex) { - logger.error("Unable to copy resource {}", resource, ex); - } - return true; - } - - @Bean - public Path processPath() { - Path processPath = dataPath().resolve(env.getProperty("process.path")); - logger.info("Data process directory set to: {}", processPath.toAbsolutePath()); - //this is needed for anything to work correctly, so make sure it exists. - if (processPath.toFile().mkdir()) { - logger.info("Made new process directory: {}", processPath.toAbsolutePath()); - } - return processPath; - } - - @Bean - public boolean downloadResources() { - boolean download = Boolean.parseBoolean(env.getProperty("downloadResources")); - logger.info("Setting application to download resources: {}", download); - return download; - } - - @Bean - public boolean extractResources() { - boolean extract = Boolean.parseBoolean(env.getProperty("extractResources")); - logger.info("Setting application to extract resources: {}", extract); - return extract; - } - - @Bean - public boolean parseResources() { - boolean parse = Boolean.parseBoolean(env.getProperty("parseResources")); - logger.info("Setting application to parse resources: {}", parse); - return parse; - } - - @Bean - public boolean dumpPhenoDigmData() { - boolean dumpPhenoDigmData = Boolean.parseBoolean(env.getProperty("dumpPhenoDigmData")); - logger.info("Setting application to dump PhenoDigm data: {}", dumpPhenoDigmData); - return dumpPhenoDigmData; - } - - @Bean - public boolean migratePostgres() { - boolean migratePostgres = Boolean.parseBoolean(env.getProperty("migratePostgres")); - logger.info("Setting application to migrate PostgreSQL database: {}", migratePostgres); - return migratePostgres; - } - - @Bean - public boolean migrateH2() { - boolean migrateH2 = Boolean.parseBoolean(env.getProperty("migrateH2")); - logger.info("Setting application to migrate H2 database: {}", migrateH2); - return migrateH2; - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/DataSourceConfig.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/DataSourceConfig.java deleted file mode 100644 index 900fa2b9e..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/DataSourceConfig.java +++ /dev/null @@ -1,69 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.config; - -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.PropertySource; -import org.springframework.core.env.Environment; -import org.springframework.jdbc.datasource.DriverManagerDataSource; - -/** - * Provides the JDBC datasource from the jdbc.properties file located in the - * classpath. - * - * @author Jules Jacobsen - */ -@Configuration -@PropertySource({"classpath:jdbc.properties"}) -public class DataSourceConfig { - - private final Logger logger = LoggerFactory.getLogger(DataSourceConfig.class); - - @Autowired - Environment env; - - @Bean - public DataSource exomiserH2DataSource() { -// System.out.println("Making a new DataSource"); - DriverManagerDataSource dataSource = new DriverManagerDataSource(); - dataSource.setDriverClassName(env.getProperty("exomiser.h2.driverClassName")); - dataSource.setUrl(env.getProperty("exomiser.h2.url")); - dataSource.setUsername(env.getProperty("exomiser.h2.username")); - dataSource.setPassword(env.getProperty("exomiser.h2.password")); - logger.info("Returning a new DataSource to URL " + dataSource.getUrl() + " username: " + env.getProperty("exomiser.h2.username")); - return dataSource; - } - - @Bean - public DataSource exomiserPostgresDataSource() { -// System.out.println("Making a new DataSource"); - DriverManagerDataSource dataSource = new DriverManagerDataSource(); - dataSource.setDriverClassName(env.getProperty("exomiser.postgres.driverClassName")); - dataSource.setUrl(env.getProperty("exomiser.postgres.url")); - dataSource.setUsername(env.getProperty("exomiser.postgres.username")); - dataSource.setPassword(env.getProperty("exomiser.postgres.password")); - logger.info("Returning a new DataSource to URL " + dataSource.getUrl() + " username: " + env.getProperty("exomiser.postgres.username")); - return dataSource; - } - - @Bean - public DataSource phenodigmDataSource() { -// System.out.println("Making a new DataSource"); - DriverManagerDataSource dataSource = new DriverManagerDataSource(); - dataSource.setDriverClassName(env.getProperty("phenodigm.driverClassName")); - dataSource.setUrl(env.getProperty("phenodigm.url")); - dataSource.setUsername(env.getProperty("phenodigm.username")); - dataSource.setPassword(env.getProperty("phenodigm.password")); - logger.info("Returning a new DataSource to URL " + dataSource.getUrl() + " username: " + env.getProperty("phenodigm.username")); - return dataSource; - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/io/FileDownloadUtils.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/io/FileDownloadUtils.java deleted file mode 100644 index fc198309e..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/io/FileDownloadUtils.java +++ /dev/null @@ -1,59 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.io; - -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.io.File; -import java.io.IOException; -import java.net.URL; -import org.apache.commons.io.FileUtils; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class FileDownloadUtils { - - private static final Logger logger = LoggerFactory.getLogger(FileDownloadUtils.class); - - /** - * Fetches the file from the source URL and writes it out to the destination - * file. - * @param source - * @param destination - * @return - */ - public static ResourceOperationStatus fetchFile(URL source, File destination) { - ResourceOperationStatus status = ResourceOperationStatus.FAILURE; - - try { - logger.info("Creating new file: {}", destination.getAbsolutePath()); - logger.info("Transferring data from: {}", source); - destination.createNewFile(); - destination.setWritable(true); -// logger.info("Protocol: {}", source.getProtocol()); -// SocketAddress socketAddress = new InetSocketAddress("wwwcache.sanger.ac.uk", 3128); -// Proxy proxy = new Proxy(Proxy.Type.HTTP, socketAddress); - FileUtils.copyURLToFile(source, destination, 2500, 15000); - } catch (IOException ex) { - logger.error("Unable to copy file from external resource due to error: ", ex); - return ResourceOperationStatus.FAILURE; - } - - //always the optimist - if (destination.length() == 0 ) { - logger.info("{} is empty - deleting file.", destination.getAbsolutePath()); - destination.delete(); - } else { - status = ResourceOperationStatus.SUCCESS; - } - - return status; - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/AbstractResourceGroupParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/AbstractResourceGroupParser.java deleted file mode 100644 index f1b947149..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/AbstractResourceGroupParser.java +++ /dev/null @@ -1,24 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public abstract class AbstractResourceGroupParser { - - private final Logger logger = LoggerFactory.getLogger(this.getClass()); - - - protected void logResourceMissing(String resourceGroupName, Class clazz) { - logger.error("MISSING RESOURCE for {} data required by {} - check this is defined in resource configuration class.", resourceGroupName, clazz); - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/DiseaseInheritanceCache.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/DiseaseInheritanceCache.java deleted file mode 100644 index c8f842e19..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/DiseaseInheritanceCache.java +++ /dev/null @@ -1,195 +0,0 @@ -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.core.model.InheritanceMode; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.io.BufferedReader; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import java.util.Map.Entry; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * This class has some common functionality for the OMIM and Orphanet parser - * classes. - * - * @author Peter Robinson - * @author Jules Jacobsen - * @version 0.01 (9 February 2014) - */ -public class DiseaseInheritanceCache implements ResourceParser { - - private static final Logger logger = LoggerFactory.getLogger(DiseaseInheritanceCache.class); - - /** - * Key: OMIM id (or Orphanet ID) for a disease, Value: InheritanceMode - */ - private Map diseaseInheritanceModeMap; - - public DiseaseInheritanceCache() { - - } - - @Override - public void parseResource(Resource resource, Path inDir, Path outDir) { - - Path phenotypeAnnotationFile = inDir.resolve(resource.getExtractedFileName()); - - ResourceOperationStatus status = setUpCache(phenotypeAnnotationFile); - - resource.setParseStatus(status); - logger.info("{}", status); - } - - - /** - * Get an appropriate inheritance code for the disease represented by - * phenID. Note that we return the code for somatic mutation only if AR and - * AD and X are not true. The same is for polygenic. - * - * Ensure that the parseResource() method has been successfully called before - * trying to - * - * @param diseaseId - * @return - */ - public InheritanceMode getInheritanceMode(Integer diseaseId) { - InheritanceMode inheritanceMode = diseaseInheritanceModeMap.get(diseaseId); - //maybe the disease hasn't been annotated so expect a null - if (inheritanceMode == null) { - inheritanceMode = InheritanceMode.UNKNOWN; - } - - return inheritanceMode; - } - - public boolean isEmpty() { - return diseaseInheritanceModeMap == null || diseaseInheritanceModeMap.isEmpty(); - } - /** - * Parse the file "phenotype_annotation.tab" in order to get the modes of - * inheritance that match the diseases. Skip lines that do not refer to OMIM - * or that are negated ("NOT"). Note we do not distinguish here between - * X-linked recessive and X-linked dominant. We go through one line at a - * time and look for annotations to modes of inheritance. The function will - * die if used with a parameter other than OMIM or Orphanet - * - * @param inFile String path to the file phenotype_annotation.tab - */ - private ResourceOperationStatus setUpCache(Path inFile) { - logger.info("Parsing inheritance modes from {} ", inFile); - //initialise this here to avoid the ability to get false negatives if - //getInheritanceMode is called before the cache is initialised. - //In which case a nullPointer will be thrown. - diseaseInheritanceModeMap = new HashMap<>(); - - Charset charSet = Charset.forName("UTF-8"); - try ( - BufferedReader br = Files.newBufferedReader(inFile, charSet)) { - - String line; - Integer diseaseId = null; - - //we're going to map each disease to all it's inheritance mode - //from the HPO annotations in the file - List inheritanceModes = new ArrayList<>(); - //and store them in this intermediate map - Map> intermadiateDiseaseInheritanceMap = new HashMap<>(); - //so let's parse... - while ((line = br.readLine()) != null) { -// System.out.println(line); - String[] fields = line.split("\t"); - if (fields[3].equals("NOT")) { - continue; - } - - Integer currentDiseaseId = Integer.parseInt(fields[1]); - //first line will have a null diseaseId - if (diseaseId == null) { - diseaseId = currentDiseaseId; - } - - //we've reached the end of this current set of disease annotations - if (!currentDiseaseId.equals(diseaseId)) { - //add the current disease and HPO annotations - intermadiateDiseaseInheritanceMap.put(diseaseId, inheritanceModes); - //reset the counters for the next set of disease annotations - diseaseId = currentDiseaseId; - inheritanceModes = new ArrayList<>(); - } - //get the hpo term - String hpoTerm = fields[4]; - //only add the known inheritance mode - InheritanceMode currentInheritance = InheritanceMode.valueOfHpoTerm(hpoTerm); - if (currentInheritance != InheritanceMode.UNKNOWN) { - inheritanceModes.add(currentInheritance); - } - } - //remember to add the final disease - intermadiateDiseaseInheritanceMap.put(diseaseId, inheritanceModes); - //now we have the map of all diseases and theirt annotations we're going to extract the - //relevant inheritance modes and store these in the cache. - diseaseInheritanceModeMap = finaliseInheritanceModes(intermadiateDiseaseInheritanceMap); - } catch (FileNotFoundException ex) { - logger.error("Could not find phenotype_annotation.tab file at location {}", inFile, ex); - return ResourceOperationStatus.FILE_NOT_FOUND; - } catch (IOException ex) { - logger.error("Tried using Charset: {}", charSet); - logger.error("Could not read phenotype_annotation.tab file from {}", inFile, ex); - return ResourceOperationStatus.FAILURE; - } - - logger.debug(diseaseInheritanceModeMap.toString()); - return ResourceOperationStatus.SUCCESS; - } - - private Map finaliseInheritanceModes(Map> diseaseInheritanceMap) { - Map inheritanceMap = new HashMap<>(); - - for (Entry> entry : diseaseInheritanceMap.entrySet()) { - logger.debug("Mapping entry {} {}", entry.getKey(), entry.getValue()); - boolean isDominant = false; - boolean isRecessive = false; - InheritanceMode inheritanceMode = InheritanceMode.UNKNOWN; - //trim out the unknowns - for (InheritanceMode mode : entry.getValue()) { - //bizzarrely some diseases appear to be both dominant and recessive - if (mode == InheritanceMode.DOMINANT) { - isDominant = true; - } - if (mode == InheritanceMode.RECESSIVE) { - isRecessive = true; - } - if (mode != InheritanceMode.UNKNOWN) { - inheritanceMode = mode; - } - } - logger.debug("InheritanceModes for {}: Dominant:{} Recessive:{}", entry.getKey(), isDominant, isRecessive); - - //now decide the inheritance - this ordering is important as mainly - //we're interested in whether the disease is dominant or recessive in order to - //check wether the observed inheritance patterns of the exome sequences match - //that of the known disease. - if (isDominant && isRecessive) { - inheritanceMode = InheritanceMode.DOMINANT_AND_RECESSIVE; - } else if (isDominant) { - inheritanceMode = InheritanceMode.DOMINANT; - } else if (isRecessive) { - inheritanceMode = InheritanceMode.RECESSIVE; - } - logger.debug("Setting inheritanceMode for {} to {}", entry.getKey(), inheritanceMode); - - inheritanceMap.put(entry.getKey(), inheritanceMode); - - } - return inheritanceMap; - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EnsemblEnhancerParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EnsemblEnhancerParser.java deleted file mode 100644 index 32d13c5ff..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EnsemblEnhancerParser.java +++ /dev/null @@ -1,79 +0,0 @@ -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.io.*; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.List; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Parse the permissive enhancers file from Fantom - * - * @version 7.02 (14th December 2015) - * @author Damian Smedley - */ -public class EnsemblEnhancerParser implements ResourceParser { - - private static final Logger logger = LoggerFactory.getLogger(EnsemblEnhancerParser.class); - - /** - * @param conn COnnection to the Exomiser database. - */ - public EnsemblEnhancerParser() { - } - - /** - * This function does the actual work of parsing the HPO file. - * - * @param resource - * @param inDir Complete path to directory containing the - * human-phenotype-ontology.obo or hp.obo file. - * @param outDir Directory where output file is to be written - * @return - */ - @Override - public void parseResource(Resource resource, Path inDir, Path outDir) { - - Path inFile = inDir.resolve(resource.getExtractedFileName()); - Path outFile = outDir.resolve(resource.getParsedFileName()); - - logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile); - ResourceOperationStatus status; - - try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.forName("UTF-8")); - BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - String line; - while ((line = reader.readLine()) != null) { - if (line.startsWith("KI")){ - continue; - } - line = line.replaceAll("\t", "|"); - line = line.replace("X|", "23|"); - line = line.replace("Y|", "24|"); - writer.write(line); - writer.newLine(); - } - writer.close(); - reader.close(); - status = ResourceOperationStatus.SUCCESS; - } catch (FileNotFoundException ex) { - logger.error(null, ex); - status = ResourceOperationStatus.FILE_NOT_FOUND; - } catch (IOException ex) { - logger.error(null, ex); - status = ResourceOperationStatus.FAILURE; - } - - resource.setParseStatus(status); - - logger.info( - "{}", status); - } - -} -/* eof */ diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EntrezParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EntrezParser.java deleted file mode 100644 index f26b25255..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EntrezParser.java +++ /dev/null @@ -1,112 +0,0 @@ -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.HashMap; -import java.util.Iterator; -import java.util.List; -import java.util.Map; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - */ -public class EntrezParser implements ResourceParser { - - private static final Logger logger = LoggerFactory.getLogger(EntrezParser.class); - private final Map> ensembl2EntrezGene; - - /** - * @param ensembl2EntrezGene - */ - public EntrezParser(Map> ensembl2EntrezGene) { - this.ensembl2EntrezGene = ensembl2EntrezGene; - } - - /** - * This function does the actual work of parsing the Entrez data. - * - * @param resource Resource containing the information about - * @param inDir Directory path to string file. - * @param outDir Directory where output file is to be written - */ - @Override - public void parseResource(Resource resource, Path inDir, Path outDir) { - - Path inFile = inDir.resolve(resource.getExtractedFileName()); - Path outFile = outDir.resolve(resource.getParsedFileName()); - - logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile); - - Map entrez2sym = new HashMap<>(); - ResourceOperationStatus status; - - try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.defaultCharset()); - BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - String line; - while ((line = reader.readLine()) != null) { - String[] split = line.split("\t"); - if (split.length != 14) { - continue; - } - String ens = split[1]; - Integer entrez = null; - if (split[1].equals("")) { - continue; - } - try { - entrez = Integer.parseInt(split[2]); - } catch (NumberFormatException e) { - logger.error("Malformed line: {} (could not parse entrez gene field: '{}')", line, split[1]); - } - - if (split[2] == null || split[2].isEmpty()) { - logger.warn("Could not extract symbol, skipping line: {}", line); - } - String symbol = split[2]; - entrez2sym.put(entrez, symbol); - if (this.ensembl2EntrezGene.containsKey(ens)) { - List test = this.ensembl2EntrezGene.get(ens); - if (!test.contains(entrez)) { - test.add(entrez); - } - } else { - List lst = new ArrayList<>(); - lst.add(entrez); - this.ensembl2EntrezGene.put(ens, lst); - } - } - - Iterator it = entrez2sym.keySet().iterator(); - while (it.hasNext()) { - Integer id = it.next(); - if (id == null) { - continue; - } - String sym = entrez2sym.get(id); - writer.write(String.format("%s|%s", id, sym)); - writer.newLine(); - } - writer.close(); - reader.close(); - status = ResourceOperationStatus.SUCCESS; - } catch (FileNotFoundException ex) { - logger.error(null, ex); - status = ResourceOperationStatus.FILE_NOT_FOUND; - } catch (IOException ex) { - logger.error(null, ex); - status = ResourceOperationStatus.FAILURE; - } - resource.setParseStatus(status); - logger.info("{}", status); - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/FantomEnhancerParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/FantomEnhancerParser.java deleted file mode 100644 index 1ed64e80c..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/FantomEnhancerParser.java +++ /dev/null @@ -1,106 +0,0 @@ -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.io.*; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.util.ArrayList; -import java.util.List; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Parse the permissive enhancers file from Fantom - * - * @version 7.02 (14th December 2015) - * @author Damian Smedley - */ -public class FantomEnhancerParser implements ResourceParser { - - private static final Logger logger = LoggerFactory.getLogger(FantomEnhancerParser.class); - - /** - * @param conn COnnection to the Exomiser database. - */ - public FantomEnhancerParser() { - } - - /** - * This function does the actual work of parsing the HPO file. - * - * @param resource - * @param inDir Complete path to directory containing the - * human-phenotype-ontology.obo or hp.obo file. - * @param outDir Directory where output file is to be written - * @return - */ - @Override - public void parseResource(Resource resource, Path inDir, Path outDir) { - - Path inFile = inDir.resolve(resource.getExtractedFileName()); - Path outFile = outDir.resolve(resource.getParsedFileName()); - - logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile); - ResourceOperationStatus status; - - try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.forName("UTF-8")); - BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - // read in array of tissues from header - String line = reader.readLine(); - String[] tissues = line.split(","); - while ((line = reader.readLine()) != null) { - line = line.replaceAll("\n", "");// ? strip off newline first - String[] lineParts = line.split(","); - int i = 0; - String chr = ""; - String start = ""; - String end = ""; - for (String linePart : lineParts) { - if (i == 0) { - linePart = linePart.replaceAll("\"", ""); - String[] parts = linePart.split(":"); - chr = parts[0]; - chr = chr.replace("chr", ""); - if (chr.equals("X")) { - chr = "23"; - } else if (chr.equals("y")) { - chr = "24"; - } - String[] positions = parts[1].split("-"); - start = positions[0]; - end = positions[1]; - - } else if (linePart.equals("1")) { - writer.write(String.format("%s|%s|%s|%s", chr, start, end, "FANTOM permissive")); - writer.newLine(); - break; - // if want to reinstate tissue-specific parts in table then add a row for every tissue instead -// String tissue = tissues[i]; -// tissue = tissue.replace("\"", ""); -// writer.write(String.format("%s|%s|%s|%s|%s", chr, start, end, "FANTOM permissive", tissue)); -// writer.newLine(); - } - i++; - } - } - writer.close(); - reader.close(); - status = ResourceOperationStatus.SUCCESS; - } catch (FileNotFoundException ex) { - logger.error(null, ex); - status = ResourceOperationStatus.FILE_NOT_FOUND; - } catch (IOException ex) { - logger.error(null, ex); - status = ResourceOperationStatus.FAILURE; - } - - resource.setParseStatus(status); - - logger.info( - "{}", status); - } - -} -/* eof */ diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/HGMDParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/HGMDParser.java deleted file mode 100644 index 61ca6b5e6..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/HGMDParser.java +++ /dev/null @@ -1,214 +0,0 @@ -package de.charite.compbio.exomiser.db.parsers; - - -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.FileInputStream; -import java.io.FileWriter; -import java.io.InputStreamReader; -import java.io.IOException; -import java.util.HashMap; -import java.util.Iterator; -import java.util.Map; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - - -/** - * Parse files from the Human Gene Mutation Database. The profile has the following structure. - * - *
      - *
    1. Disease Name (e.g., Hyperinsulinism ) - *
    2. Gene symbol (e.g., ABCC8) - *
    3. Chromosome band (e.g., 11p15.1) - *
    4. Gene name (e.g., ATP-binding cassette, sub-family C (CFTR/MRP), member 8 (sulphonylurea receptor, SUR)) - *
    5. 591370 (seems to be a Human Genome Database ID; the HGD no longer exists) - *
    6. 600509 (OMIM Gene id) - *
    7. Ala-Val (amino acid change) - *
    8. \N - *
    9. \N - *
    10. 163 (amino acid position) - *
    11. 163 (amino acid position) - *
    12. Ala163Val (protein mutation, 3 letter code) - *
    13. 488C>T (c.DNA mutation) - *
    14. 488CtoT (cDNA mutation in English words, 1 letter code) - *
    15. A163V (protein mutation) - *
    16. rs72466448 (dbSNP id) - *
    17. 11 (chromosomal location of gene) -*
    18. 17415243 (start position of mutation) -*
    19. 17415243 (end position of mutation) -*
    20. DM? (DM: disease-causing mutations; DP:disease-associated polymorphisms; DFP: disease-associated polymorphisms -* , and FP: in vitro/laboratory or in vivo functional polymorphisms). -*
    21. Yorifuji (Name of first author) -*
    22. J Clin Endocrinol Metab (journal abbreviation) -*
    23. The Journal of clinical endocrinology and metabolism (journal full name) -*
    24. 96 (volume) -*
    25. E141 (page) -*
    26. 2011 (year) -*
    27. 20943781 (pmid) -*
    28. PRI (?) -*
    29. \N -*
    30. CS110251 -*
    31. 2011-01-13 -*
    32. S -*
    - * @version 0.04 (28 November, 2013) - * @author Peter Robinson - * - */ -public class HGMDParser { - - private static final Logger logger = LoggerFactory.getLogger(HGMDParser.class); - - /* Path to HGMD's allmut.txt pro file. - private String hgmdProPath=null; - /** FileWriter for the hgmd-pro.pg "dump" file */ - private FileWriter fstream =null; - /** BufferedWriter for the hgmd-pro.pg "dump" file */ - private BufferedWriter out =null; - - private int currentNumber; - - private Map id2DiseaseMap=null; - - public HGMDParser() { - this.id2DiseaseMap = new HashMap(); - this.currentNumber = 1; - } - - - private void initializeOutFileHandle(String outname) throws IOException { - this.fstream = new FileWriter(outname); - this.out = new BufferedWriter(this.fstream); - } - - - private Integer getDiseaseGeneID(String diseasename, String genesym) { - String s = String.format("%s|%s",diseasename, genesym); - Integer id = this.id2DiseaseMap.get(s); - if (id == null) { /* We have not seen this string before */ - id = new Integer(this.currentNumber); - this.currentNumber++; - this.id2DiseaseMap.put(s,id); - } - return id; - } - - private void outputDiseaseGeneDumpFile() throws IOException { - String outname="hgmddisease.pg"; - initializeOutFileHandle(outname); - Iterator it = this.id2DiseaseMap.keySet().iterator(); - while (it.hasNext()) { - String disease = it.next(); - Integer id = this.id2DiseaseMap.get(disease); - int i = disease.indexOf("|"); - if (i<0) { - logger.error("Could not parse HGMD disease/gene string: {}", disease); - System.exit(1); - } - String dis = disease.substring(0,i); - String gs = disease.substring(i+1); - String s = String.format("%d|%s|%s",id,dis,gs); - //System.out.println(s); - out.write(s + "\n"); - } - this.out.close(); - - } - - - - /** This function parses the HGMD Pro file and creates a "dump" file that can be used to - * populate the postgreSQL database. - * See the setup documentation for instructions on how to import the outputfile, which - * is called hgmdpro.pg to the database. - * @param path Path to the allmut.txt file of HGMD. - */ - public void parseHGMDProFile(String path) { - logger.info("Parsing HGMD Pro File: {}", path); - try{ - /* The infile */ - FileInputStream fstr = new FileInputStream(path); - //DataInputStream in = new DataInputStream(fstream); - BufferedReader br = new BufferedReader(new InputStreamReader(fstr)); - String outname="hgmdpro.pg"; - initializeOutFileHandle(outname); - String line = br.readLine(); - - /* Skip up to the first Term stanza. */ - String diseasename=null; - String gensym=null; /* Gene Symbol */ - String cDNAmut=null; /* e.g., 461A>G */ - String aaMut=null; /* e.g., Q154R */ - String chr=null; - String start=null; - String end=null; - String pmid=null; - int c = 0; - int bad=0; - int no_pmid=0; - logger.info("Parsing HGMD Pro File ready {}", br.ready() ); - while ((line = br.readLine()) != null) { - String[] fields = line.split("!"); - if (fields.length<27) { - //System.out.println("Error parsing line with less than 30 fields:\n" + line + "\n\t=>Had only " + F.length + " fields"); - bad++; - continue; - } - diseasename=fields[0]; - gensym=fields[1]; - cDNAmut=fields[12]; - aaMut=fields[11]; - chr=fields[15]; - start=fields[16]; - end=fields[17]; - pmid=fields[25]; - - switch (chr) { - case "X": - chr = "23"; - break; - case "Y": - chr = "24"; - break; - case "M": - chr="25"; - break; - } - - Integer pubmedInt = null; - try { - pubmedInt = Integer.parseInt(pmid); - } catch (NumberFormatException e) { - //System.out.println("Difficulties parsing line:\n"+line); - //e.printStackTrace(); - no_pmid++; - pmid="-1"; /* flag for no pmid given */ - } - - if (diseasename==null || gensym == null) { - logger.error("Disease or gene sym null on line\n{}\n", line); - continue; - } - Integer id = getDiseaseGeneID(diseasename,gensym); - String s = String.format("%d|%s|%s|%s|%s|%s",id,cDNAmut,aaMut,chr,start,pmid); - //System.out.println(s); - out.write(s + "\n"); - c++; - if (c % 5000 == 0) - logger.info("Parsed {} HGMD mutations", c); - } - br.close(); - this.out.close(); - logger.info("Parsed {} mutations and skipped {} malformed lines, and did not find pmid for {} mutations", c, bad, no_pmid); - outputDiseaseGeneDumpFile(); - } catch (IOException e) { - logger.error("{}", e); - System.exit(1); - } - - } - - - -} \ No newline at end of file diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MetaDataParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MetaDataParser.java deleted file mode 100644 index 3633fcb98..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MetaDataParser.java +++ /dev/null @@ -1,66 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.io.BufferedWriter; -import java.io.IOException; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import org.joda.time.Instant; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Creates a pipe delimited file of resource|version - * @author Jules Jacobsen - */ -public class MetaDataParser implements ResourceParser { - - private static final Logger logger = LoggerFactory.getLogger(MetaDataParser.class); - - private final Iterable externalResources; - private final Resource metaDataResource; - - public MetaDataParser (Resource metaDataResource, Iterable externalResources) { - this.metaDataResource = metaDataResource; - this.externalResources = externalResources; - } - - @Override - public void parseResource(Resource metaDataResource, Path inDir, Path outDir) { - - Path outFile = outDir.resolve(metaDataResource.getParsedFileName()); - - logger.info("Parsing {}. Writing out to: {}", metaDataResource.getName(), outFile); - ResourceOperationStatus status; - try ( - BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - - for (Resource resource : externalResources) { - String version = resource.getVersion(); - - if (version == null || version.isEmpty()) { - Instant now = Instant.now(); - version = now.toString(); - } - logger.info("Resource: {} Version: {}", resource.getName(), version); - writer.write(String.format("%s|%s%n", resource.getName(), version)); - } - status = ResourceOperationStatus.SUCCESS; - } catch (IOException ex) { - logger.error("Error parsing external resources MetaData", ex); - status = ResourceOperationStatus.FAILURE; - } - metaDataResource.setParseStatus(status); - logger.info("{}", status); - } - - -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MimToGeneParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MimToGeneParser.java deleted file mode 100644 index c8d990310..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MimToGeneParser.java +++ /dev/null @@ -1,175 +0,0 @@ -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.nio.charset.Charset; -import java.nio.file.Files; -import java.nio.file.Path; -import java.util.Map; -import java.util.Set; -import java.util.TreeSet; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * This class is designed to parseResource two files from OMIM in order to - * extract information that links OMIM ids to Entrez Gene ids. The format of the - * mim2gene file is as follows: - *
    - * #Format: MIM_number GeneID type (tab is used as a separator, pound sign - start of a comment)
    - * 100070	100329167	gene
    - * 100100	1131	phenotype
    - * 100300	57514	phenotype
    - * 100300	100188340	gene
    - * 100640	216	gene
    - * 
    In this example, the OMIM entry 100300 is a phenotype entry for - * Adams-Oliver syndrome 1 (AOS1). It is associated with the gene gene ARHGAP31, - * which has the NCBI Entrez Gene id 57514. The next line shows 100188340, which - * is the Entrez gene id for Adams Oliver syndrome (Note: It is strange and - * unhelpful that Entrez Gene now seems to be giving some diseases gene ids...). - *

    - * The morbidmap file has the following format - *

    - * Abetalipoproteinemia, 200100 (3)  |MTP|157147|4q22-q24
    - * Acampomelic campomelic dysplasia, 114290 (3)  |SOX9, CMD1, SRA1|608160|17q24.3-q25.1
    - * 
    For example, the entry 114290 is the disease entry for campomelic - * dysplasia, and the entry 608160 is the gene entry for the disease gene SOX9. - * Note that we now additionally take the file phenotype_annotation.tab from the - * HPO project in order to parseResource out whether OMIM or Orphanet entries - * follow a recessive, dominant or X chromosomal inheritance. - * - * @author Peter N Robinson - * @version 0.07 (9 February, 2014) - */ -public class MimToGeneParser implements ResourceParser { - - private static final Logger logger = LoggerFactory.getLogger(MimToGeneParser.class); - - Map> mim2geneMap; - - /** - * Key: A MIM id for a Gene; Value: the corresponding entrez Gene id. This - * information comes from mim2gene.txt - * - * @param mim2geneMap - */ - public MimToGeneParser(Map> mim2geneMap) { - this.mim2geneMap = mim2geneMap; - } - - /** - * Parse OMIMs mim2gene.txt file. A typical line is - *
    -     * 100710  gene    1140    CHRNB1
    -     * 
    The first number is the MIM number, the second field tells us - * whether the entry is a gene or a phenotype, the thrid entry is the Entrez - * Gene ID, and the fourth field is the gene symbol. Note the we - * parseResource this file exclusively for the phenotype to gene relations, - * meaning we only use the lines that start with the keyword "gene". - */ - @Override - public void parseResource(Resource resource, Path inDir, Path outDir) { - - Path inFile = inDir.resolve(resource.getExtractedFileName()); - Path outFile = outDir.resolve(resource.getParsedFileName()); - - logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile); - - ResourceOperationStatus status; - - try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.defaultCharset())) { - String line; - - while ((line = reader.readLine()) != null) { - //ignore comment lines - if (line.startsWith("#")) { - continue; - } - String[] fields = line.split("\t"); - if (fields.length < 3) { // malformed, should never happen - logger.error("Malformed mim2gene line: " + line); - logger.error("Found only {} fields", fields.length); - continue; - } - try { - String type = fields[1].trim(); - /* The following gets both "gene" and "gene/phenotype" */ - if (!type.startsWith("gene")) { - continue; /* We do not need phenotype MIMs or other types such as removed */ - - } - /* There are a lot of lines such as - "102777 gene - -" - That do not have valid Entrez Gene ids. We just skip them */ - if (fields[2].equals("-")) { - continue; - } - Integer mim = Integer.parseInt(fields[0]); - Integer entrezGeneId = Integer.parseInt(fields[2]); // Entrez Gene ID */ - //String IDs[] = gene.split(",") -// addMIM2EntrezGenePair(mim, entrezGeneId); - Set geneSet; - if (mim2geneMap.containsKey(mim)) { - geneSet = mim2geneMap.get(mim); - geneSet.add(entrezGeneId); - } else { - geneSet = new TreeSet<>(); - geneSet.add(entrezGeneId); - mim2geneMap.put(mim, geneSet); - } - } catch (NumberFormatException e) { - logger.error("{}", e); - } - } - logger.info("Extracted {} genes from {}", mim2geneMap.size(), inFile); - status = ResourceOperationStatus.SUCCESS; - - } catch (FileNotFoundException ex) { - logger.error("Unable to find file: {}", inFile, ex); - status = ResourceOperationStatus.FILE_NOT_FOUND; - } catch (IOException ex) { - logger.error("Error parsing file: {}", inFile, ex); - status = ResourceOperationStatus.FAILURE; - } - - resource.setParseStatus(status); - logger.info("{}", status); - - } - -// /** -// * This is essentially a structure with three elements representing a line -// * in the mim2gene File -// */ -// private class MIM2Gene { -// -// /** -// * MIM number -// */ -// public int mim; -// /** -// * 'P': phenotype, 'G': gene -// */ -// public char type; -// /** -// * Entrez Gene ID -// */ -// public int geneID; -// -// public MIM2Gene(int m, String t, int g) { -// this.mim = m; -// if (t.equals("gene")) { -// this.type = 'G'; -// } else { -// System.err.println("Could not identify type in MIM2Gene: " + t); -// System.exit(1); -// } -// this.geneID = g; -// } -// } - -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/OmimResourceGroupParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/OmimResourceGroupParser.java deleted file mode 100644 index 4ed4e72b2..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/OmimResourceGroupParser.java +++ /dev/null @@ -1,84 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceGroup; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.nio.file.Path; -import java.util.HashMap; -import java.util.Map; -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.stereotype.Component; - -/** - * - * @author Jules Jacobsen - */ -@Component -public class OmimResourceGroupParser extends AbstractResourceGroupParser implements ResourceGroupParser { - - public static final String NAME = "OMIM"; - - private static final Logger logger = LoggerFactory.getLogger(OmimResourceGroupParser.class); - - private Resource morbidMapResource; - private Resource mim2geneResource; - private Resource hpoPhenotypeAnnotations; - - @Override - public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir) { - - logger.info("Parsing {} resources. Writing out to: {}", resourceGroup.getName(), outDir); - - //Check everything is present before trying to parse them - if (!requiredResourcesPresent(resourceGroup)) { - logger.error("Not parsing {} ResourceGroup resources as not all required resources are present.", resourceGroup.getName()); - return; - } - - Map> mim2geneMap = new HashMap<>(); - //first parseResource the mim2gene file - MimToGeneParser mimParser = new MimToGeneParser(mim2geneMap); - mimParser.parseResource(mim2geneResource, inDir, outDir); - - //Need to make the cache for the morbidmap resourceParser - DiseaseInheritanceCache diseaseInheritanceCache = new DiseaseInheritanceCache(); - diseaseInheritanceCache.parseResource(hpoPhenotypeAnnotations, inDir, outDir); - if (!diseaseInheritanceCache.isEmpty()) { - hpoPhenotypeAnnotations.setParseStatus(ResourceOperationStatus.SUCCESS); - } - //make the MimList which morbid map will populate - MorbidMapParser morbidParser = new MorbidMapParser(diseaseInheritanceCache, mim2geneMap); - morbidParser.parseResource(morbidMapResource, inDir, outDir); - } - - @Override - public boolean requiredResourcesPresent(ResourceGroup resourceGroup) { - morbidMapResource = resourceGroup.getResource(MorbidMapParser.class); - if (morbidMapResource == null) { - logResourceMissing(resourceGroup.getName(), MorbidMapParser.class); - return false; - } - - mim2geneResource = resourceGroup.getResource(MimToGeneParser.class); - if (mim2geneResource == null) { - logResourceMissing(resourceGroup.getName(), MimToGeneParser.class); - return false; - } - - hpoPhenotypeAnnotations = resourceGroup.getResource(DiseaseInheritanceCache.class); - if (hpoPhenotypeAnnotations == null) { - logResourceMissing(resourceGroup.getName(), DiseaseInheritanceCache.class); - return false; - } - - return true; - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ResourceGroupParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ResourceGroupParser.java deleted file mode 100644 index ef006aed2..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ResourceGroupParser.java +++ /dev/null @@ -1,39 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.ResourceGroup; -import java.nio.file.Path; - -/** - * Interface defining the functionality for how a group of parsers should work in concert - * in order to produce the output file(s). - * - * - * @author Jules Jacobsen - */ -public interface ResourceGroupParser { - - /** - * Parses the {@code de.charite.compbio.exomiser.resources.Resource} contained in the - * {@code de.charite.compbio.exomiser.resources.ResourceGroup} according to - * the internal rules of the {@cadede.charite.compbio.exomiser.parsers.ResourceGroupParser} - * implementation. - * - * @param resourceGroup - * @param inDir - * @param outDir - */ - public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir); - - /** - * Checks that all the required resources for the ResourceGroupParser are present. - * @param resourceGroup - * @return false if any resource is missing. - */ - public boolean requiredResourcesPresent(ResourceGroup resourceGroup); -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ResourceParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ResourceParser.java deleted file mode 100644 index 212b5beec..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ResourceParser.java +++ /dev/null @@ -1,20 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.Resource; -import java.nio.file.Path; - -/** - * - * @author Jules Jacobsen - */ -public interface ResourceParser { - - public void parseResource(Resource resource, Path inDir, Path outDir); - -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/StringResourceGroupParser.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/StringResourceGroupParser.java deleted file mode 100644 index 8796391bb..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/StringResourceGroupParser.java +++ /dev/null @@ -1,69 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceGroup; -import java.nio.file.Path; -import java.util.HashMap; -import java.util.List; -import java.util.Map; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * - * @author Jules Jacobsen - */ -public class StringResourceGroupParser extends AbstractResourceGroupParser implements ResourceGroupParser { - - public static final String NAME = "STRING"; - - private static final Logger logger = LoggerFactory.getLogger(StringResourceGroupParser.class); - - private Resource entrezResource; - private Resource stringResource; - - @Override - public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir) { - - logger.info("Parsing {} resources. Writing out to: {}", resourceGroup.getName(), outDir); - - //Check everything is present before trying to parse them - if (!requiredResourcesPresent(resourceGroup)) { - logger.error("Not parsing {} ResourceGroup resources as not all required resources are present.", resourceGroup.getName()); - return; - } - - Map> ensembl2EntrezGene = new HashMap<>(); - //first parseResource the entrez gene to symbol and ensembl peptide biomart file - EntrezParser entrezParser = new EntrezParser(ensembl2EntrezGene); - entrezParser.parseResource(entrezResource, inDir, outDir); - - //now parseResource the STRING DB file - StringParser stringParser = new StringParser(ensembl2EntrezGene); - stringParser.parseResource(stringResource, inDir, outDir); - - } - - @Override - public boolean requiredResourcesPresent(ResourceGroup resourceGroup) { - - entrezResource = resourceGroup.getResource(EntrezParser.class); - if (entrezResource == null) { - logResourceMissing(resourceGroup.getName(), EntrezParser.class); - return false; - } - - stringResource = resourceGroup.getResource(StringParser.class); - if (stringResource == null) { - logResourceMissing(resourceGroup.getName(), StringParser.class); - return false; - } - - return true; - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/reference/Frequency.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/reference/Frequency.java deleted file mode 100644 index 235267455..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/reference/Frequency.java +++ /dev/null @@ -1,357 +0,0 @@ -package de.charite.compbio.exomiser.db.reference; - -import java.util.Objects; - -/** - * This class is meant to be used for parsing dbSNP data and ESP data to get - * information about the population frequency of variants. Objects of this class - * will be created by the parsers {@link exomizer.io.dbSNP2FrequencyParser dbSNP2FrequencyParser} - * as well as {@link exomizer.io.ESP2FrequencyParser ESP2FrequencyParser} during - * parsing, and matching variants will be combined. Finally, objects of this - * class know how to write themselves as a line of the postgres Dump File.

    - * The frequencies (from dbSNP and ESP) are both stored as percentages. Note - * that the files downloaded from ESP expressed the MAF (minor allele frequency) - * as a percentage, whereas the files from dbSNP use a proportion. The code in - * {@link exomizer.io.dbSNP2FrequencyParser dbSNP2FrequencyParser} therefore - * converts the data in dbSNP to percentages for uniformity's sake.

    Note - * that this class implements {@code Comparable} because it is intended to be - * used as an element of a {@code TreeSet} in the class - * {@link exomizer.io.dbSNP2FrequencyParser dbSNP2FrequencyParser} in order to - * sort and search these objects while creating a dump file for postgreSQL. - * - * @author Peter Robinson - * @version 0.08 (29 June, 2013) - */ -public class Frequency implements Comparable { - - /** - * Byte representation of the chromosome - */ - private final byte chromosome; - /** - * Start position of the variant on the chromosome - */ - private final int pos; - /** - * Sequence (one or more nucleotides) of the reference - */ - private final String ref; - /** - * Sequence (one or more nucleotides) of the alt (variant) sequence - */ - private final String alt; - /** - * Integer representation of the rsId - */ - private int rsId; - /** - * Float representation of dbSNP minor allele frequency (from 1000G phase I - * via dbSNP), expressed as a percentage - */ - private float dbSNPmaf; - /** - * Float representation of the ESP minor allele frequency for European - * Americans, expressed as a percentage * - */ - private float espEA; - /** - * Float representation of the ESP minor allele frequency for African - * Americans, expressed as a percentage * - */ - private float espAA; - /** - * Float representation of the ESP minor allele frequency for all comers, - * expressed as a percentage * - */ - private float espAll; - private float exACAfr; - private float exACAmr; - private float exACEas; - private float exACFin; - private float exACNfe; - private float exACOth; - private float exACSas; - - public Frequency(byte chromosome, int position, String ref, String alt, int rsId) { - this.chromosome = chromosome; - this.pos = position; - this.ref = ref; - this.alt = alt; - this.rsId = rsId; - } - - public byte getChromosome() { - return chromosome; - } - - public int getPos() { - return pos; - } - - public String getRef() { - return ref; - } - - public String getAlt() { - return alt; - } - - public int getRsId() { - return rsId; - } - - public float getESPFrequencyAA() { - return espAA; - } - - public float getESPFrequencyEA() { - return espEA; - } - - public float getESPFrequencyAll() { - return espAll; - } - - public float getExACFrequencyAfr() { - return exACAfr; - } - - public float getExACFrequencyAmr() { - return exACAmr; - } - - public float getExACFrequencyEas() { - return exACEas; - } - - public float getExACFrequencyFin() { - return exACFin; - } - - public float getExACFrequencyNfe() { - return exACNfe; - } - - public float getExACFrequencyOth() { - return exACOth; - } - - public float getExACFrequencySas() { - return exACSas; - } - - - public void setRsId(int rsId) { - this.rsId = rsId; - } - - /** - * Sets the frequency (expressed as percent) in dbSNP data of the current - * variant. Note that client code is expected to transform propoprtions, - * i.e. value \in [0,1] into percentages, i.e., value \in [0,100] before - * calling this method. - * - * @param maf The minor allele frequency, expressed as a percentage. - */ - public void setDbSnpGmaf(float maf) { - this.dbSNPmaf = maf; - } - - /** - * Sets the frequency (expressed as percent) in the ESP data of the current - * variant. Note that the ESP MAF is expressed in percentage in the original - * files, and thus, the parameter is a value \in [0,100] - * - * @param f The minor allele frequency of this variant as found in the ESP - * data. - */ - public void setESPFrequencyEA(float f) { - this.espEA = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ESP - * data. - */ - public void setESPFrequencyAA(float f) { - this.espAA = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ESP - * data. - */ - public void setESPFrequencyAll(float f) { - this.espAll = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ExAC - * data. - */ - public void setExACFrequencyAfr(float f) { - this.exACAfr = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ExAC - * data. - */ - public void setExACFrequencyAmr(float f) { - this.exACAmr = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ExAC - * data. - */ - public void setExACFrequencyEas(float f) { - this.exACEas = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ExAC - * data. - */ - public void setExACFrequencyFin(float f) { - this.exACFin = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ExAC - * data. - */ - public void setExACFrequencyNfe(float f) { - this.exACNfe = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ExAC - * data. - */ - public void setExACFrequencyOth(float f) { - this.exACOth = f; - } - - /** - * @param f The minor allele frequency of this variant as found in the ExAC - * data. - */ - public void setExACFrequencySas(float f) { - this.exACSas = f; - } - - /** - * This frequency object has four frequency estimations, - * {@link #dbSNPmaf}, {@link #espEA}, {@link #espAA}, and {@link #espAll}. - * This method returns the maximum frequency amongst these four values. - */ - public float getMaximumFrequency() { - return Math.max(Math.max(this.dbSNPmaf, this.espAll), Math.max(this.espEA, this.espAA)); - } - - /** - * This method is used to create a single line of the file we will import - * into the postgreSQL database (table: frequency). The structure of the - * line is

    chromosome | position | ref | alt | rsid | dbSNPmaf | - * ESPmafEA | ESPmafAA | ESPmafAll;

    Note that the rsId is printed as an - * integer and that client code will need to add the "rs" and transform it - * into a String. - */ - public String getDumpLine() { - String s = String.format("%d|%d|%s|%s|%d|%f|%f|%f|%f|%f|%f|%f|%f|%f|%f|%f%n", this.chromosome, this.pos, this.ref, this.alt, this.rsId, this.dbSNPmaf, this.espEA, - this.espAA, this.espAll, this.exACAfr, this.exACAmr, this.exACEas, this.exACFin, this.exACNfe, this.exACOth, this.exACSas); - return s; - } - - /** - * This method is implemented for the {@code Comparable} interface. We sort - * frequency objects based on

    1. Chromosome
    2. Position
    3. Reference - * sequence
    4. Alt sequence
    - */ - @Override - public int compareTo(Frequency f) { - if (this.chromosome != f.chromosome) { - return (this.chromosome - f.chromosome); - } - if (this.pos != f.pos) { - return (this.pos - f.pos); - } - if (!this.ref.equals(f.ref)) { - return this.ref.compareTo(f.ref); - } - return this.alt.compareTo(f.alt); - } - - @Override - public int hashCode() { - int hash = 7; - hash = 37 * hash + this.chromosome; - hash = 37 * hash + this.pos; - hash = 37 * hash + Objects.hashCode(this.ref); - hash = 37 * hash + Objects.hashCode(this.alt); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final Frequency other = (Frequency) obj; - if (this.chromosome != other.chromosome) { - return false; - } - if (this.pos != other.pos) { - return false; - } - if (!Objects.equals(this.ref, other.ref)) { - return false; - } - return Objects.equals(this.alt, other.alt); - } - - /** - * This method checks of the frequency object other ias located at the same - * position as the current object. The method is intended to help avoid - * putting duplicate entries into the database. - */ - public boolean isIdenticalSNP(Frequency other) { - if (this.chromosome != other.chromosome) { - return false; - } - if (this.pos != other.pos) { - return false; - } - if (!this.ref.equals(other.ref)) { - return false; - } - if (!this.alt.equals(other.alt)) { - return false; - } - return true; - } - - /** - * In a few cases, dbSNP contains multiple entries for some given SNP. This - * method is used to reset an entry to the values of some other entry in - * these cases (see the method checkVariantForExomalLocationAndOutput from - * the class dbSNP2FrequencyParser). - */ - public void resetFrequencyValues(Frequency other) { - this.dbSNPmaf = other.dbSNPmaf; - this.espEA = other.espEA; - this.espAA = other.espAA; - this.espAll = other.espAll; - this.rsId = other.rsId; - - } - - @Override - public String toString() { - return "Frequency{" + "chromosome=" + chromosome + ", pos=" + pos + ", ref=" + ref + ", alt=" + alt + ", rsID=" + rsId + ", dbSNPmaf=" + dbSNPmaf + ", espEA=" + espEA + ", espAA=" + espAA + ", espAll=" + espAll + '}'; - } -} \ No newline at end of file diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/reference/VariantPathogenicity.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/reference/VariantPathogenicity.java deleted file mode 100644 index e4f1ddb0b..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/reference/VariantPathogenicity.java +++ /dev/null @@ -1,82 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.db.reference; - -/** - * Class representing the chrom/ref/position/alt and calculated pathogenicity - * scores. - * - * @author Jules Jacobsen - */ -public class VariantPathogenicity { - - //TODO: this class needs refactoring to split out the variant coordinates - //from the pathogenicity scores. - private final int chromosome; - private final int position; - private final String ref; - private final String alt; - - private final Float siftScore; - private final Float polyphenScore; - private final Float muttasterScore; - private final Float caddRawRankScore; - private final Float caddRawScore; - - /** - * This class encapsulates the information in a single dbNSFP line. In some - * cases, there are multiple lines for the same chromosomal position. We - * choose the line that is predicted to be most pathogenic by using the - * function {@link #maxPathogenicity maxPathogenicity()} of this class. The - * function {@link #toDumpLine toDumpLine()} can then be called to get the - * corresponding SQL dump line. - * - * @param chromosome An integer representation of the chromosome (23:X, - * 24:Y, 25:M) - * @param position Position of the variant on the chromosome - * @param ref reference nucleotide - * @param alt variant (alternate) nucleotide - * @param siftScore SIFT score for the variant - * @param polyphen2HVAR Polyphen2 score for the variant - * @param muttasterScore Mutation Taster score for the variant - * @param phyloP phyloP conservation score for the variant - * @param caddRawRankScore - * @param caddRawScore - */ - public VariantPathogenicity(int chromosome, int position, String ref, String alt, - Float siftScore, Float polyphen2HVAR, Float muttasterScore, - Float caddRawRankScore, Float caddRawScore) { - this.chromosome = chromosome; - this.position = position; - this.ref = ref; - this.alt = alt; - this.siftScore = siftScore; - this.polyphenScore = polyphen2HVAR; - this.muttasterScore = muttasterScore; - this.caddRawRankScore = caddRawRankScore; - this.caddRawScore = caddRawScore; - } - - /** - * This returns a line that will form part of the import file for - * postgreSQL. - * - * @return - */ - public String toDumpLine() { - return String.format("%s|%s|%s|%s|%s|%s|%s|%s|%s%n", - chromosome, position, ref, alt, - siftScore, polyphenScore, muttasterScore, caddRawRankScore, caddRawScore); - } - - @Override - public String toString() { - return "VariantPathogenicity{" + "chromosome=" + chromosome + - ", position=" + position + ", ref=" + ref + ", alt=" + alt + - ", sift=" + siftScore + ", polyphen=" + polyphenScore + - ", muttaster=" + muttasterScore + ", caddRawRank=" + caddRawRankScore + ", caddRaw=" + caddRawScore + '}'; - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceDownloadHandler.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceDownloadHandler.java deleted file mode 100644 index 686b2aa55..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceDownloadHandler.java +++ /dev/null @@ -1,68 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.db.resources; - -import de.charite.compbio.exomiser.db.io.FileDownloadUtils; -import java.net.MalformedURLException; -import java.net.URL; -import java.nio.file.Path; -import org.joda.time.Instant; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * Handles the business of downloading a set of ExternalResources - * - * @author Jules Jacobsen - */ -public class ResourceDownloadHandler { - - private static final Logger logger = LoggerFactory.getLogger(ResourceDownloadHandler.class); - - public static void downloadResources(Iterable externalResources, Path downloadPath) { - - int numResources = 0; - for (Resource resource : externalResources) { - numResources++; - downloadResource(resource, downloadPath); - } - - logger.info("Transferred {} file(s) with the following statuses:", numResources); - for (Resource resource : externalResources) { - logger.info("{}", resource.getStatus()); - } - - } - - public static void downloadResource(Resource externalResource, Path downloadDir) { - - ResourceOperationStatus status; - if (externalResource.getUrl() == null || externalResource.getUrl().isEmpty()) { - logger.info("Resource {} has no URL set - skipping resource.", externalResource.getName()); - return; - } - try { - - URL resourceUrl = new URL(externalResource.getUrl() + externalResource.getRemoteFileName()); - logger.info("Resource: {}: Getting {} from {}", externalResource.getName(), externalResource.getRemoteFileName(), resourceUrl); - Path downloadPath = downloadDir.resolve(externalResource.getRemoteFileName()); - status = FileDownloadUtils.fetchFile(resourceUrl, downloadPath.toFile()); - externalResource.setDownloadStatus(status); - //if there is no version info for the resource, set a timestamp - if (externalResource.getVersion() == null || externalResource.getVersion().isEmpty()) { - externalResource.setVersion(Instant.now().toString()); - } - - } catch (MalformedURLException ex) { - status = ResourceOperationStatus.FAILURE; - logger.error(null, ex); - } - externalResource.setDownloadStatus(status); - - logger.info("{}", externalResource.getStatus()); - - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceGroup.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceGroup.java deleted file mode 100644 index 7e9d28d77..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceGroup.java +++ /dev/null @@ -1,124 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.db.resources; - -import de.charite.compbio.exomiser.db.parsers.ResourceGroupParser; -import de.charite.compbio.exomiser.db.parsers.ResourceParser; -import java.util.LinkedHashMap; -import java.util.Map; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - -/** - * This class represents a bundle of resources which need to be parsed as a - * group due to inter-dependencies of the resources. - * - *

    - * For example the OMIM resources mordbidmap and mim2gene have related - * information which needs to be drawn together in order to produce the final - * dump file for the omim table. The - * {@code de.charite.compbio.exomiser.resources.ResourceGroup} provides a means - * of grouping these together so that they can be parsed in the correct order by - * a {@code de.charite.compbio.exomiser.parsers.ResourceGroupParser}. - * - * @see de.charite.compbio.exomiser.db.parsers.ResourceGroupParser - * - * @author Jules Jacobsen - */ -public class ResourceGroup { - - private static final Logger logger = LoggerFactory.getLogger(ResourceGroup.class); - private final String groupName; - private final Class resourceGroupParserClass; - private final Map, Resource> resourcesClassMap; - private final Map resourcesNameMap; - - public ResourceGroup(String groupName, Class resourceGroupParserClass) { - this.groupName = groupName; - this.resourceGroupParserClass = resourceGroupParserClass; - this.resourcesClassMap = new LinkedHashMap<>(); - this.resourcesNameMap = new LinkedHashMap<>(); - } - - public String getName() { - return groupName; - } - - public Class getParserClass() { - return resourceGroupParserClass; - } - - public boolean addResource(Resource resource) { - - if (resource.getParserClass() == null) { - resourcesNameMap.put(resource.getName(), resource); - return true; - } else { - //this will work for all resources apart from the ucsc_hg19.ser which is - //used as a cache by other parsers - - Class resourceParserClass = resource.getParserClass(); - if (resourceParserClass != null) { - resourcesClassMap.put(resourceParserClass, resource); - //we need to add the resource to the name map in all cases as the - //resource could be requested by name as well as my class - resourcesNameMap.put(resource.getName(), resource); - return true; - } - } - return false; - } - - /** - * Returns the {@code de.charite.compbio.exomiser.resources.Resource} which - * is parsed by the specified - * {@code de.charite.compbio.exomiser.parsers.ResourceParser} class or a - * null. - * - *

    - * This is the preferred method for getting a resource from the - * ResourceGroup as opposed to the getResource(String resourceName). - * Although there is a potential for configuring things incorrectly to start - * with, there is better type-safety using the full class groupName of the - * {@code de.charite.compbio.exomiser.parsers.ResourceParser} - * - * @param clazz the class of the - * {@code de.charite.compbio.exomiser.parsers.ResourceParser} used to parse - * a {@code de.charite.compbio.exomiser.resources.Resource} - * @return The matching - * {@code de.charite.compbio.exomiser.resources.Resource} or null if no - * match is found. - */ - public Resource getResource(Class clazz) { - return resourcesClassMap.get(clazz); - } - - /** - * Returns the {@code de.charite.compbio.exomiser.resources.Resource} with - * the same groupName as the provided resourceName or a null. - * - *

    - * Only use this method when there is no ResourceParserClass available for - * the resource as this method essentially relies on hard-coded names for - * resources. In preference to this define a ResourceParserClass and use the - * getResource(Class clazz) method. - * - * - * @param resourceName the groupName of the required - * {@code de.charite.compbio.exomiser.resources.Resource} - * @return The matching - * {@code de.charite.compbio.exomiser.resources.Resource} or null if no - * match is found. - */ - public Resource getResource(String resourceName) { - return resourcesNameMap.get(resourceName); - } - - @Override - public String toString() { - return "ResourceGroup{" + "groupName=" + groupName + ", resourceGroupParserClass=" + resourceGroupParserClass + ", resources=" + resourcesClassMap.values() + '}'; - } -} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceOperationStatus.java b/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceOperationStatus.java deleted file mode 100644 index 586e805be..000000000 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceOperationStatus.java +++ /dev/null @@ -1,16 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.resources; - -/** - * Constants for describing the status of a file operation. - * - * @author Jule Jacobsen - */ -public enum ResourceOperationStatus { - FAILURE, SUCCESS, UNTRIED, FILE_NOT_FOUND, PARSER_NOT_FOUND; -} diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/BuildDatabaseApplication.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/BuildDatabaseApplication.java new file mode 100644 index 000000000..c9a36f27d --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/BuildDatabaseApplication.java @@ -0,0 +1,34 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db; + +import org.springframework.boot.SpringApplication; +import org.springframework.boot.autoconfigure.SpringBootApplication; + +/** + * @author Jules Jacobsen + */ +@SpringBootApplication +public class BuildDatabaseApplication { + public static void main(String[] args) { + SpringApplication.run(BuildDatabaseApplication.class, args).close(); + } +} diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/Main.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/Main.java new file mode 100644 index 000000000..57bf4fb70 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/Main.java @@ -0,0 +1,165 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db; + +import org.flywaydb.core.Flyway; +import org.monarchinitiative.exomiser.db.config.AppConfig; +import org.monarchinitiative.exomiser.db.config.DataSourceConfig; +import org.monarchinitiative.exomiser.db.config.ResourceConfig; +import org.monarchinitiative.exomiser.db.io.PhenodigmDataDumper; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceDownloadHandler; +import org.monarchinitiative.exomiser.db.resources.ResourceExtractionHandler; +import org.monarchinitiative.exomiser.db.resources.ResourceParserHandler; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.boot.ApplicationArguments; +import org.springframework.boot.ApplicationRunner; +import org.springframework.stereotype.Component; + +import javax.sql.DataSource; +import java.nio.file.Path; +import java.util.HashMap; +import java.util.Map; +import java.util.Set; + +/** + * Main class for building the exomiser database. This will attempt to download + * and process the resources specified in the app.properties file. + * {@code org.monarchinitiative.exomiser.config.ResourceConfig}. + * + */ +@Component +public class Main implements ApplicationRunner { + + private static final Logger logger = LoggerFactory.getLogger(Main.class); + + private final AppConfig appConfig; + private final ResourceConfig resourceConfig; + private final DataSourceConfig dataSourceConfig; + private final PhenodigmDataDumper phenodigmDataDumper; + + public Main(AppConfig appConfig, ResourceConfig resourceConfig, DataSourceConfig dataSourceConfig, PhenodigmDataDumper phenodigmDataDumper) { + this.appConfig = appConfig; + this.resourceConfig = resourceConfig; + this.dataSourceConfig = dataSourceConfig; + this.phenodigmDataDumper = phenodigmDataDumper; + } + + @Override + public void run(ApplicationArguments applicationArguments) { + //set the Paths + Path dataPath = appConfig.dataPath(); + Path downloadPath = appConfig.downloadPath(); + + Set externalResources = resourceConfig.resources(); + + //Download the Resources + boolean downloadResources = appConfig.downloadResources(); + if (downloadResources) { + //download and unzip the necessary input files + logger.info("Downloading required flatfiles..."); + ResourceDownloadHandler.downloadResources(externalResources, downloadPath); + } else { + logger.info("Skipping download of external resource files."); + } + //Path for processing the downloaded files to prepare them for parsing (i.e. unzip, untar) + Path proccessPath = appConfig.processPath(); + + //Extract the Resources + boolean extractResources = appConfig.extractResources(); + if (extractResources) { + //process the downloaded files to prepare them for parsing (i.e. unzip, untar) + logger.info("Extracting required flatfiles..."); + ResourceExtractionHandler.extractResources(externalResources, downloadPath, proccessPath); + } else { + logger.info("Skipping extraction of external resource files."); + } + + //Parse the Resources + boolean parseResources = appConfig.parseResources(); + if (parseResources) { + //parse the file and output to the project output dir. + logger.info("Parsing resource files..."); + ResourceParserHandler.parseResources(externalResources, proccessPath, dataPath); + + } else { + logger.info("Skipping parsing of external resource files."); + } + + logger.info("Statuses for external resources:"); + for (Resource resource : externalResources) { + logger.info(resource.getStatus()); + } + + //dump Phenodigm data to flatfiles for import + boolean dumpPhenoDigmData = appConfig.dumpPhenoDigmData(); + if (dumpPhenoDigmData) { + logger.info("Making Phenodigm data dump files..."); + phenodigmDataDumper.dumpPhenodigmData(dataPath); + } else { + logger.info("Skipping making Phenodigm data dump files."); + } + + logger.info("Migrating exomiser databases..."); + //define where the data import path is otherwise everything will fail + Map propertyPlaceHolders = new HashMap<>(); + propertyPlaceHolders.put("import.path", dataPath.toString()); + + boolean migratePostgres = appConfig.migratePostgres(); + if (migratePostgres) { + DataSource postgresDataSource = dataSourceConfig.exomiserPostgresDataSource(); + migratePostgreSqlDatabase(postgresDataSource, propertyPlaceHolders); + } else { + logger.info("Skipping migration of PostgreSQL database."); + } + + boolean migrateH2 = appConfig.migrateH2(); + if (migrateH2) { + DataSource h2DataSource = dataSourceConfig.exomiserH2DataSource(); + migrateH2Database(h2DataSource, propertyPlaceHolders); + } else { + logger.info("Skipping migration of H2 database."); + } + } + + private static void migratePostgreSqlDatabase(DataSource dataSource, Map propertyPlaceHolders) { + logger.info("Migrating exomiser PostgreSQL database..."); + Flyway postgresqlFlyway = new Flyway(); + postgresqlFlyway.setDataSource(dataSource); + postgresqlFlyway.setSchemas("EXOMISER"); + postgresqlFlyway.setLocations("db/migration/common", "db/migration/postgres"); + postgresqlFlyway.setPlaceholders(propertyPlaceHolders); + postgresqlFlyway.clean(); + postgresqlFlyway.migrate(); + } + + private static void migrateH2Database(DataSource h2DataSource, Map propertyPlaceHolders) { + logger.info("Migrating exomiser H2 database..."); + Flyway h2Flyway = new Flyway(); + h2Flyway.setDataSource(h2DataSource); + h2Flyway.setSchemas("EXOMISER"); + h2Flyway.setLocations("db/migration/common", "db/migration/h2"); + h2Flyway.setPlaceholders(propertyPlaceHolders); + h2Flyway.clean(); + h2Flyway.migrate(); + } +} diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/AppConfig.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/AppConfig.java new file mode 100644 index 000000000..a2ed9bb7f --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/AppConfig.java @@ -0,0 +1,181 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.db.config; + +import org.monarchinitiative.exomiser.db.io.PhenodigmDataDumper; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.context.annotation.PropertySource; +import org.springframework.core.env.Environment; +import org.springframework.core.io.ClassPathResource; +import org.springframework.core.io.Resource; +import org.springframework.core.io.ResourceLoader; + +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.IOException; +import java.io.InputStreamReader; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; + +/** + * Provides configuration details from the app.properties file located in the + * classpath. + * + * @author Jules Jacobsen + */ +@Configuration +@PropertySource({"classpath:app.properties"}) +public class AppConfig { + + static final Logger logger = LoggerFactory.getLogger(AppConfig.class); + + @Autowired + Environment env; + + @Autowired + private ResourceLoader resourceLoader; + + @Bean + public PhenodigmDataDumper phenodigmDataDumper() { + return new PhenodigmDataDumper(); + } + + @Bean + public Path dataPath() { + Path dataPath = Paths.get(env.getProperty("data.path")); + logger.info("Root data working directory set to: {}", dataPath.toAbsolutePath()); + //this is needed for anything to work correctly, so make sure it exists. + if (dataPath.toFile().mkdir()) { + logger.info("Made new data directory: {}", dataPath.toAbsolutePath()); + } + return dataPath; + } + + @Bean + public Path downloadPath() { + Path downloadPath = Paths.get(dataPath().toString(), env.getProperty("download.path")); + logger.info("Data download directory set to: {}", downloadPath.toAbsolutePath()); + //this is needed for anything to work correctly, so make sure it exists. + if (downloadPath.toFile().mkdir()) { + logger.info("Made new download directory: {}", downloadPath.toAbsolutePath()); + } + return downloadPath; + } + + /** + * Dirty hack to copy the static data into the data directory. + */ + @Bean + public boolean copyPheno2GeneResource() { + Resource resource = new ClassPathResource("data/pheno2gene.txt"); + try (BufferedReader br = new BufferedReader(new InputStreamReader(resource.getInputStream())); + BufferedWriter writer = Files.newBufferedWriter(downloadPath().resolve("pheno2gene.txt"), Charset.forName("UTF-8"))) { + String line; + while ((line = br.readLine()) != null) { + writer.write(line + "\n"); + } + logger.info("Copied {} to {}", resource, downloadPath()); + } catch (IOException ex) { + logger.error("Unable to copy resource {}", resource, ex); + } + return true; + } + + @Bean + public boolean copyTadResource() { + Resource resource = new ClassPathResource("data/tad.pg"); + try (BufferedReader br = new BufferedReader(new InputStreamReader(resource.getInputStream())); + BufferedWriter writer = Files.newBufferedWriter(downloadPath().resolve("tad.pg"), Charset.forName("UTF-8"))) { + String line; + while ((line = br.readLine()) != null) { + writer.write(line + "\n"); + } + logger.info("Copied {} to {}", resource, downloadPath()); + } catch (IOException ex) { + logger.error("Unable to copy resource {}", resource, ex); + } + return true; + } + + @Bean + public Path processPath() { + Path processPath = dataPath().resolve(env.getProperty("process.path")); + logger.info("Data process directory set to: {}", processPath.toAbsolutePath()); + //this is needed for anything to work correctly, so make sure it exists. + if (processPath.toFile().mkdir()) { + logger.info("Made new process directory: {}", processPath.toAbsolutePath()); + } + return processPath; + } + + @Bean + public boolean downloadResources() { + boolean download = Boolean.parseBoolean(env.getProperty("downloadResources")); + logger.info("Setting application to download resources: {}", download); + return download; + } + + @Bean + public boolean extractResources() { + boolean extract = Boolean.parseBoolean(env.getProperty("extractResources")); + logger.info("Setting application to extract resources: {}", extract); + return extract; + } + + @Bean + public boolean parseResources() { + boolean parse = Boolean.parseBoolean(env.getProperty("parseResources")); + logger.info("Setting application to parse resources: {}", parse); + return parse; + } + + @Bean + public boolean dumpPhenoDigmData() { + boolean dumpPhenoDigmData = Boolean.parseBoolean(env.getProperty("dumpPhenoDigmData")); + logger.info("Setting application to dump PhenoDigm data: {}", dumpPhenoDigmData); + return dumpPhenoDigmData; + } + + @Bean + public boolean migratePostgres() { + boolean migratePostgres = Boolean.parseBoolean(env.getProperty("migratePostgres")); + logger.info("Setting application to migrate PostgreSQL database: {}", migratePostgres); + return migratePostgres; + } + + @Bean + public boolean migrateH2() { + boolean migrateH2 = Boolean.parseBoolean(env.getProperty("migrateH2")); + logger.info("Setting application to migrate H2 database: {}", migrateH2); + return migrateH2; + } +} diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/DataSourceConfig.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/DataSourceConfig.java new file mode 100644 index 000000000..fa9718061 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/DataSourceConfig.java @@ -0,0 +1,89 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.config; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.context.annotation.Primary; +import org.springframework.context.annotation.PropertySource; +import org.springframework.core.env.Environment; +import org.springframework.jdbc.datasource.DriverManagerDataSource; + +import javax.sql.DataSource; + +/** + * Provides the JDBC datasource from the jdbc.properties file located in the + * classpath. + * + * @author Jules Jacobsen + */ +@Configuration +@PropertySource({"classpath:jdbc.properties"}) +public class DataSourceConfig { + + private final Logger logger = LoggerFactory.getLogger(DataSourceConfig.class); + + @Autowired + Environment env; + + @Primary + @Bean + public DataSource exomiserH2DataSource() { + DriverManagerDataSource dataSource = new DriverManagerDataSource(); + dataSource.setDriverClassName(env.getProperty("exomiser.h2.driverClassName")); + dataSource.setUrl(env.getProperty("exomiser.h2.url")); + dataSource.setUsername(env.getProperty("exomiser.h2.username")); + dataSource.setPassword(env.getProperty("exomiser.h2.password")); + logger.info("Returning a new DataSource to URL {} username: {}", dataSource.getUrl(), env.getProperty("exomiser.h2.username")); + return dataSource; + } + + @Bean + public DataSource exomiserPostgresDataSource() { + DriverManagerDataSource dataSource = new DriverManagerDataSource(); + dataSource.setDriverClassName(env.getProperty("exomiser.postgres.driverClassName")); + dataSource.setUrl(env.getProperty("exomiser.postgres.url")); + dataSource.setUsername(env.getProperty("exomiser.postgres.username")); + dataSource.setPassword(env.getProperty("exomiser.postgres.password")); + logger.info("Returning a new DataSource to URL {} username: {}", dataSource.getUrl(), env.getProperty("exomiser.postgres.username")); + return dataSource; + } + + @Bean + public DataSource phenodigmDataSource() { + DriverManagerDataSource dataSource = new DriverManagerDataSource(); + dataSource.setDriverClassName(env.getProperty("phenodigm.driverClassName")); + dataSource.setUrl(env.getProperty("phenodigm.url")); + dataSource.setUsername(env.getProperty("phenodigm.username")); + dataSource.setPassword(env.getProperty("phenodigm.password")); + logger.info("Returning a new DataSource to URL {} username: {}", dataSource.getUrl(), env.getProperty("phenodigm.username")); + return dataSource; + } +} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/ResourceConfig.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/ResourceConfig.java similarity index 78% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/ResourceConfig.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/ResourceConfig.java index ff94a098a..e8d894c19 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/config/ResourceConfig.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/config/ResourceConfig.java @@ -1,33 +1,33 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.config; - -import de.charite.compbio.exomiser.db.parsers.ClinVarParser; -import de.charite.compbio.exomiser.db.parsers.DbSnpFrequencyParser; -import de.charite.compbio.exomiser.db.parsers.DiseaseInheritanceCache; -import de.charite.compbio.exomiser.db.parsers.EnsemblEnhancerParser; -import de.charite.compbio.exomiser.db.parsers.EntrezParser; -import de.charite.compbio.exomiser.db.parsers.EspFrequencyParser; -import de.charite.compbio.exomiser.db.parsers.ExACFrequencyParser; -import de.charite.compbio.exomiser.db.parsers.FantomEnhancerParser; -import de.charite.compbio.exomiser.db.parsers.HPOOntologyFileParser; -import de.charite.compbio.exomiser.db.parsers.MetaDataParser; -import de.charite.compbio.exomiser.db.parsers.MimToGeneParser; -import de.charite.compbio.exomiser.db.parsers.MorbidMapParser; -import de.charite.compbio.exomiser.db.parsers.NSFP2SQLDumpParser; -import de.charite.compbio.exomiser.db.parsers.Omim2GeneParser; -import de.charite.compbio.exomiser.db.parsers.OmimResourceGroupParser; -import de.charite.compbio.exomiser.db.parsers.PhenoSeriesParser; -import de.charite.compbio.exomiser.db.parsers.StringParser; -import de.charite.compbio.exomiser.db.parsers.StringResourceGroupParser; -import de.charite.compbio.exomiser.db.parsers.VariantFrequencyResourceGroupParser; -import de.charite.compbio.exomiser.db.resources.Resource; -import java.util.LinkedHashSet; -import java.util.Set; +package org.monarchinitiative.exomiser.db.config; + +import org.monarchinitiative.exomiser.db.parsers.*; +import org.monarchinitiative.exomiser.db.resources.Resource; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; @@ -36,64 +36,63 @@ import org.springframework.context.annotation.PropertySource; import org.springframework.core.env.Environment; +import java.util.LinkedHashSet; +import java.util.Set; + /** - * Java configuration for providing {@code Resource} definitions for the + * Java configuration for providing {@code Resource} definitions for the * application to work on. - * + *

    * If you want to add another data source, this is where you define the resource * and the application will pick it up and incorporate the data into the database. - * Obviously you'll have to write a parser and a flyway migration to get the data + * Obviously you'll have to write a parser and a flyway migration to get the data * into the database. - * + * * @author Jules Jacobsen */ @Configuration @PropertySource({"classpath:resource.properties"}) public class ResourceConfig { - + private static final Logger logger = LoggerFactory.getLogger(ResourceConfig.class); - + @Autowired Environment env; - - private Set resources; - + @Bean public Set resources() { - if (resources == null) { - logger.info("Making new set of Resources"); - resources = new LinkedHashSet(); + logger.info("Making new set of Resources"); + Set resources = new LinkedHashSet<>(); // resources.add(exampleResource()); - resources.add(hpoResource()); - //OMIM group - resources.add(omimMimToGeneResource()); - resources.add(omimMorbidMapResource()); - resources.add(hpoPhenotypeAnnotationsResource()); - //StringDB group - resources.add(stringEntrezToSymResource()); - resources.add(stringProteinLinksResource()); - //Exome Walker - resources.add(exomeWalkerPhenotypicSeriesResource()); - resources.add(exomeWalkerOmimToGeneResource()); - //Regulatory features - resources.add(fantomEnhancerResource()); - resources.add(ensemblEnhancerResource()); - resources.add(clinVarResource()); - resources.add(metaDataResource()); - - //these ones are biggies: - resources.add(dbNsfpResource()); - //VariantFrequency group - resources.add(dbSnpResource()); - resources.add(espResource()); - resources.add(jannovarResource()); - resources.add(exacResource()); - } - + resources.add(hpoResource()); + //OMIM group + resources.add(omimMimToGeneResource()); + resources.add(omimMorbidMapResource()); + resources.add(hpoPhenotypeAnnotationsResource()); + //StringDB group + resources.add(stringEntrezToSymResource()); + resources.add(stringProteinLinksResource()); + //Exome Walker + resources.add(exomeWalkerPhenotypicSeriesResource()); + resources.add(exomeWalkerOmimToGeneResource()); + //Regulatory features + resources.add(fantomEnhancerResource()); + resources.add(ensemblEnhancerResource()); + resources.add(clinVarResource()); + resources.add(metaDataResource()); + + //these ones are biggies: + resources.add(dbNsfpResource()); + //VariantFrequency group + resources.add(dbSnpResource()); + resources.add(espResource()); + resources.add(jannovarResource()); + resources.add(exacResource()); + return resources; - + } - + @Bean public Resource exampleResource() { logger.info("Making example resource"); @@ -109,9 +108,9 @@ public Resource exampleResource() { // resource.setResourceGroupName(""); resource.setResourceGroupParserClass(null); - + return resource; - } + } //reads properties from resource.properties for a given resource and populates the resource variables private void populateResourceFromProperty(String resourcePropertyId, Resource resource) { @@ -122,7 +121,7 @@ private void populateResourceFromProperty(String resourcePropertyId, Resource re resource.setExtractionScheme(env.getProperty(resourcePropertyId + ".extractScheme")); resource.setParsedFileName(env.getProperty(resourcePropertyId + ".parsedName")); } - + @Bean public Resource hpoResource() { logger.info("Making HPO resource"); @@ -133,9 +132,9 @@ public Resource hpoResource() { //resource groups resource.setResourceGroupName(""); resource.setResourceGroupParserClass(null); - + return resource; - } + } @Bean public Resource dbNsfpResource() { @@ -147,9 +146,9 @@ public Resource dbNsfpResource() { // resource.setResourceGroupName(""); resource.setResourceGroupParserClass(null); - + return resource; - } + } @Bean public Resource dbSnpResource() { @@ -161,10 +160,10 @@ public Resource dbSnpResource() { //resource groups resource.setResourceGroupName(VariantFrequencyResourceGroupParser.NAME); resource.setResourceGroupParserClass(VariantFrequencyResourceGroupParser.class); - + return resource; } - + @Bean public Resource exacResource() { logger.info("Making ExAC resource"); @@ -175,10 +174,10 @@ public Resource exacResource() { //resource groups resource.setResourceGroupName(VariantFrequencyResourceGroupParser.NAME); resource.setResourceGroupParserClass(VariantFrequencyResourceGroupParser.class); - + return resource; } - + @Bean public Resource espResource() { logger.info("Making ESP resource"); @@ -189,10 +188,10 @@ public Resource espResource() { //resource groups resource.setResourceGroupName(VariantFrequencyResourceGroupParser.NAME); resource.setResourceGroupParserClass(VariantFrequencyResourceGroupParser.class); - + return resource; } - + @Bean public Resource jannovarResource() { logger.info("Making UCSC_HG19 resource"); @@ -203,9 +202,9 @@ public Resource jannovarResource() { // resource.setResourceGroupName(VariantFrequencyResourceGroupParser.NAME); resource.setResourceGroupParserClass(VariantFrequencyResourceGroupParser.class); - + return resource; - } + } @Bean public Resource omimMimToGeneResource() { @@ -217,10 +216,10 @@ public Resource omimMimToGeneResource() { //part of the OMIM ResourceGroup resource.setResourceGroupName(OmimResourceGroupParser.NAME); resource.setResourceGroupParserClass(OmimResourceGroupParser.class); - + return resource; } - + @Bean public Resource omimMorbidMapResource() { logger.info("Making OMIM_morbidmap resource"); @@ -231,24 +230,24 @@ public Resource omimMorbidMapResource() { //part of the OMIM ResourceGroup resource.setResourceGroupName(OmimResourceGroupParser.NAME); resource.setResourceGroupParserClass(OmimResourceGroupParser.class); - + return resource; } - + @Bean public Resource hpoPhenotypeAnnotationsResource() { logger.info("Making HPO_phenotype_annotations resource"); Resource resource = new Resource("HPO_phenotype_annotations"); populateResourceFromProperty("omimpheno", resource); - // + // resource.setParserClass(DiseaseInheritanceCache.class); //part of the OMIM ResourceGroup resource.setResourceGroupName(OmimResourceGroupParser.NAME); resource.setResourceGroupParserClass(OmimResourceGroupParser.class); - + return resource; } - + @Bean public Resource stringEntrezToSymResource() { logger.info("Making STRING_entrez2sym resource"); @@ -259,10 +258,10 @@ public Resource stringEntrezToSymResource() { // resource.setResourceGroupName(StringResourceGroupParser.NAME); resource.setResourceGroupParserClass(StringResourceGroupParser.class); - + return resource; } - + @Bean public Resource stringProteinLinksResource() { logger.info("Making STRING_protein_links resource"); @@ -273,10 +272,10 @@ public Resource stringProteinLinksResource() { // resource.setResourceGroupName(StringResourceGroupParser.NAME); resource.setResourceGroupParserClass(StringResourceGroupParser.class); - + return resource; } - + @Bean public Resource exomeWalkerPhenotypicSeriesResource() { logger.info("Making ExomeWalker_phenotypic_series resource"); @@ -288,10 +287,10 @@ public Resource exomeWalkerPhenotypicSeriesResource() { // resource.setResourceGroupName(null); resource.setResourceGroupParserClass(null); - + return resource; } - + @Bean public Resource fantomEnhancerResource() { logger.info("Making FANTOM enhancer resource"); @@ -303,10 +302,10 @@ public Resource fantomEnhancerResource() { // resource.setResourceGroupName(null); resource.setResourceGroupParserClass(null); - + return resource; } - + @Bean public Resource ensemblEnhancerResource() { logger.info("Making Ensembl enhancer resource"); @@ -318,10 +317,10 @@ public Resource ensemblEnhancerResource() { // resource.setResourceGroupName(null); resource.setResourceGroupParserClass(null); - + return resource; } - + @Bean public Resource exomeWalkerOmimToGeneResource() { logger.info("Making ExomeWalker_omim2gene resource"); @@ -332,10 +331,10 @@ public Resource exomeWalkerOmimToGeneResource() { // resource.setResourceGroupName(""); resource.setResourceGroupParserClass(null); - + return resource; } - + @Bean public Resource clinVarResource() { logger.info("Making ClinVar resource"); @@ -346,10 +345,10 @@ public Resource clinVarResource() { // resource.setResourceGroupName(""); resource.setResourceGroupParserClass(null); - + return resource; } - + @Bean public Resource metaDataResource() { logger.info("Making MetaData resource"); @@ -365,8 +364,8 @@ public Resource metaDataResource() { // resource.setResourceGroupName(""); resource.setResourceGroupParserClass(null); - + return resource; } - + } diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/io/FileDownloadUtils.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/io/FileDownloadUtils.java new file mode 100644 index 000000000..e2020af21 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/io/FileDownloadUtils.java @@ -0,0 +1,84 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.io; + +import org.apache.commons.io.FileUtils; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.File; +import java.io.IOException; +import java.net.URL; + +/** + * + * @author Jules Jacobsen + */ +public class FileDownloadUtils { + + private static final Logger logger = LoggerFactory.getLogger(FileDownloadUtils.class); + + private FileDownloadUtils() { + //this class should not be instantiated + } + + /** + * Fetches the file from the source URL and writes it out to the destination + * file. + * @param source + * @param destination + * @return + */ + public static ResourceOperationStatus fetchFile(URL source, File destination) { + ResourceOperationStatus status = ResourceOperationStatus.FAILURE; + + try { + logger.info("Creating new file: {}", destination.getAbsolutePath()); + logger.info("Transferring data from: {}", source); + destination.createNewFile(); + destination.setWritable(true); +// logger.info("Protocol: {}", source.getProtocol()); +// SocketAddress socketAddress = new InetSocketAddress("wwwcache.sanger.ac.uk", 3128); +// Proxy proxy = new Proxy(Proxy.Type.HTTP, socketAddress); + FileUtils.copyURLToFile(source, destination, 2500, 15000); + } catch (IOException ex) { + logger.error("Unable to copy file from external resource due to error: ", ex); + return ResourceOperationStatus.FAILURE; + } + + //always the optimist + if (destination.length() == 0 ) { + logger.info("{} is empty - deleting file.", destination.getAbsolutePath()); + destination.delete(); + } else { + status = ResourceOperationStatus.SUCCESS; + } + + return status; + } +} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/io/PhenodigmDataDumper.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/io/PhenodigmDataDumper.java similarity index 90% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/io/PhenodigmDataDumper.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/io/PhenodigmDataDumper.java index 45b9fba10..f25d4aaf8 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/io/PhenodigmDataDumper.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/io/PhenodigmDataDumper.java @@ -1,10 +1,36 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.io; +package org.monarchinitiative.exomiser.db.io; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +import javax.sql.DataSource; import java.io.BufferedWriter; import java.io.File; import java.io.FileWriter; @@ -14,11 +40,6 @@ import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Component; /** * Connects to Phenodigm and dumps out data in pipe delimited format to the @@ -30,13 +51,10 @@ public class PhenodigmDataDumper { private static final Logger logger = LoggerFactory.getLogger(PhenodigmDataDumper.class); - + @Autowired private DataSource phenodigmDataSource; - public PhenodigmDataDumper() { - } - /** * * @param outputPath @@ -72,7 +90,7 @@ protected File dumpOrphanet(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -100,7 +118,7 @@ protected File dumpMp(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -127,7 +145,7 @@ protected File dumpZp(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -155,7 +173,7 @@ protected File dumpMouseGeneOrthologs(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -184,7 +202,7 @@ protected File dumpFishGeneOrthologs(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -215,7 +233,7 @@ protected File dumpDiseaseHp(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -244,7 +262,7 @@ protected File dumpMouseMp(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -275,7 +293,7 @@ protected File dumpFishZp(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -296,34 +314,6 @@ protected File dumpFishZp(Path outputPath, String outName) { return outfile; } - -// protected File dumpDiseaseDiseaseSummary(Path outputPath, String outName) { -// File outfile = new File(outputPath.toFile(), outName); -// logger.info("Dumping Phenodigm diseaseDiseaseSummary data to file: {}", outfile); -// -// String sql = "select disease_id , disease_match , disease_to_disease_perc_score from disease_disease_association"; -// //no need to close things when using the try-with-resources -// try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); -// Connection connection = phenodigmConnection.getConnection(); -// PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { -// ps.setFetchSize(Integer.MIN_VALUE); -// -// ResultSet rs = ps.executeQuery(); -// while (rs.next()) { -// String diseaseId = rs.getString("disease_id"); -// String diseaseMatch = rs.getString("disease_match"); -// String score = rs.getString("disease_to_disease_perc_score"); -// -// String outLine = String.format("%s|%s|%s", diseaseId, diseaseMatch, score); -// writer.write(outLine); -// writer.newLine(); -// } -// -// } catch (IOException | SQLException ex) { -// logger.error(null, ex); -// } -// return outfile; -// } protected File dumpOmimTerms(Path outputPath, String outName) { File outfile = new File(outputPath.toFile(), outName); logger.info("Dumping Phenodigm omimTerms data to file: {}", outfile); @@ -332,7 +322,7 @@ protected File dumpOmimTerms(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -361,7 +351,7 @@ protected File dumpHpMpMapping(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -375,15 +365,12 @@ protected File dumpHpMpMapping(Path outputPath, String outName) { String simJ = rs.getString("simJ"); String ic = rs.getString("ic"); String lcs = rs.getString("lcs"); - //logger.info(lcs); String lcsId = ""; String lcsTerm = lcs; String[] lcsParts = lcs.split("\\("); if (lcsParts.length != 1){ - int terms = lcsParts.length; lcsTerm = lcsParts[0].trim(); - lcsId = lcsParts[terms - 1]; - lcsId = lcsId.replace(")", ""); + lcsId = getLcsId(lcsParts); } String outLine = String.format("%d|%s|%s|%s|%s|%s|%s|%s|%s|%s", id, hpId, hpTerm, mpId, mpTerm, simJ, ic, score, lcsId, lcsTerm); writer.write(outLine); @@ -406,7 +393,7 @@ protected File dumpHpZpMapping(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -420,15 +407,12 @@ protected File dumpHpZpMapping(Path outputPath, String outName) { String simJ = rs.getString("simJ"); String ic = rs.getString("ic"); String lcs = rs.getString("lcs"); - //logger.info(lcs); String lcsId = ""; String lcsTerm = lcs; String[] lcsParts = lcs.split("\\("); if (lcsParts.length != 1){ - int terms = lcsParts.length; lcsTerm = lcsParts[0].trim(); - lcsId = lcsParts[terms - 1]; - lcsId = lcsId.replace(")", ""); + lcsId = getLcsId(lcsParts); } String outLine = String.format("%d|%s|%s|%s|%s|%s|%s|%s|%s|%s", id, hpId, hpTerm, zpId, zpTerm, simJ, ic, score, lcsId, lcsTerm); writer.write(outLine); @@ -452,7 +436,7 @@ protected File dumpHpHpMapping(Path outputPath, String outName) { //no need to close things when using the try-with-resources try (BufferedWriter writer = new BufferedWriter(new FileWriter(outfile)); Connection connection = phenodigmDataSource.getConnection(); - PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY);) { + PreparedStatement ps = connection.prepareStatement(sql, ResultSet.TYPE_FORWARD_ONLY, ResultSet.CONCUR_READ_ONLY)) { ps.setFetchSize(Integer.MIN_VALUE); ResultSet rs = ps.executeQuery(); @@ -466,15 +450,12 @@ protected File dumpHpHpMapping(Path outputPath, String outName) { String simJ = rs.getString("simJ"); String ic = rs.getString("ic"); String lcs = rs.getString("lcs"); - //logger.info(lcs); String lcsId = ""; String lcsTerm = lcs; String[] lcsParts = lcs.split("\\("); if (lcsParts.length != 1){ - int terms = lcsParts.length; lcsTerm = lcsParts[0].trim(); - lcsId = lcsParts[terms - 1]; - lcsId = lcsId.replace(")", ""); + lcsId = getLcsId(lcsParts); } String outLine = String.format("%d|%s|%s|%s|%s|%s|%s|%s|%s|%s", id, hpId, hpTerm, hpIdHit, hpTermHit, simJ, ic, score, lcsId, lcsTerm); writer.write(outLine); @@ -487,5 +468,12 @@ protected File dumpHpHpMapping(Path outputPath, String outName) { return outfile; } - + private String getLcsId(String[] lcsParts) { + String lcsId; + lcsId = lcsParts[lcsParts.length - 1]; + lcsId = lcsId.replace(")", ""); + return lcsId; + } + + } diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/AbstractResourceGroupParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/AbstractResourceGroupParser.java new file mode 100644 index 000000000..5fa118da4 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/AbstractResourceGroupParser.java @@ -0,0 +1,44 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +/** + * + * @author Jules Jacobsen + */ +public abstract class AbstractResourceGroupParser { + + private final Logger logger = LoggerFactory.getLogger(this.getClass()); + + + protected void logResourceMissing(String resourceGroupName, Class clazz) { + logger.error("MISSING RESOURCE for {} data required by {} - check this is defined in resource configuration class.", resourceGroupName, clazz); + } +} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ClinVarParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ClinVarParser.java similarity index 82% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ClinVarParser.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ClinVarParser.java index 5bc29acb8..10117baa6 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ClinVarParser.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ClinVarParser.java @@ -1,7 +1,30 @@ -package de.charite.compbio.exomiser.db.parsers; +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.FileNotFoundException; @@ -12,9 +35,6 @@ import java.util.ArrayList; import java.util.List; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - /** * Parse variant_summary.txt from NCBI's ClinVarar. The file has the following * structure. @@ -130,7 +150,7 @@ private class ClinVar { } private String toDumpLine() { - return String.format("%s|%s|%s|%s%n", chromosome, position, accession, significance); + return String.format("%s|%s|%s|%s%n", chromosome, position, accession, significance); } } @@ -147,12 +167,12 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { int wrongBuildVariants = 0; int goodVariants = 0; ResourceOperationStatus status; - + try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.forName("UTF-8")); - BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - + BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { + String line; - + while ((line = reader.readLine()) != null) { if (line.startsWith("#")) { logger.info(line); @@ -165,16 +185,17 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { logger.warn("Line has only {} fields. Expected at least %s fields", split.length, expectedFieldLength); continue; } + String type = split[1]; - String build = split[12]; - String RCV = split[8]; - String chr = split[13]; - String from = split[14]; - String to = split[15]; - String sign = split[5]; + String build = split[16]; + String RCV = split[11]; + String chr = split[18]; + String from = split[19]; + String to = split[20]; + String sign = split[6]; // logger.info(line); - - if (chr.equals("-") || chr.isEmpty() || from.equals("-") || from.equals("")) { + //logger.info(chr+":"+from+":"+to+":"+sign+":"+type+":"+build+":"+RCV); + if (chr.equals("Un") || chr.equals("na") || chr.equals("-") || chr.isEmpty() || from.equals("-") || from.equals("")) { logger.info("Skipping {} Chr='{}', from='{}' - No positional information defined on line: {}", type, chr, from, line); noPositionInfoVariants++; continue; @@ -224,11 +245,11 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { logger.error(null, ex); status = ResourceOperationStatus.FAILURE; } - + logger.info("No position information for {} variants", noPositionInfoVariants); logger.info("Found information for {} variants", goodVariants); logger.info("{} variants were skipped because they are not from build {}", wrongBuildVariants, expectedBuild); - + resource.setParseStatus(status); logger.info("{}", status); } diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/DbSnpFrequencyParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/DbSnpFrequencyParser.java similarity index 86% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/DbSnpFrequencyParser.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/DbSnpFrequencyParser.java index ae0adb4b2..f2a40ea38 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/DbSnpFrequencyParser.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/DbSnpFrequencyParser.java @@ -1,25 +1,39 @@ -package de.charite.compbio.exomiser.db.parsers; +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import de.charite.compbio.exomiser.db.reference.Frequency; -import de.charite.compbio.exomiser.db.resources.Resource; import de.charite.compbio.jannovar.data.JannovarData; import de.charite.compbio.jannovar.data.ReferenceDictionary; +import org.monarchinitiative.exomiser.db.reference.Frequency; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; -import java.io.BufferedReader; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; +import java.io.*; import java.nio.channels.FileChannel; import java.nio.file.Path; import java.util.List; import java.util.zip.GZIPInputStream; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - /** * This class is designed to parseResource the dbSNP file {@code 00-All.vcf} * which is available in gzipped form at the dbSNP FTP site. We use a collection @@ -35,22 +49,11 @@ public class DbSnpFrequencyParser implements ResourceParser { private static final Logger logger = LoggerFactory.getLogger(DbSnpFrequencyParser.class); - /** - * Total number of unique exons - */ - private int n_exons; - /** - * Total number of variants found to be located in exons - */ - private int n_exonic_vars; - /** - * Total number of variants found to be located outside of exonic sequences - */ - private int n_non_exonic_vars; + /** * Total number of duplicate entries in dbSNP. */ - private int n_duplicates; + private int numDuplicates; /** * List of all variants that pass threshold for inclusion in database * because they are exonic @@ -69,7 +72,6 @@ public class DbSnpFrequencyParser implements ResourceParser { /* * use to avoid duplicate entries. */ - Frequency previous = null; byte chromosome; /** @@ -138,8 +140,7 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { // return; // } - try { - FileInputStream fis = new FileInputStream(inFile.toString()); + try (FileInputStream fis = new FileInputStream(inFile.toString())){ InputStream is; /* @@ -149,8 +150,9 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { try { is = new GZIPInputStream(fis); } catch (IOException exp) { - fis.close(); - is = fis = new FileInputStream(inFile.toString()); + //ought to use Apache Tika to determine the filetype first, then choose appropriate InputStream + logger.info("dbSNP file {} is apparently not in gzip format", inFile); + is = fis; } FileChannel fc = fis.getChannel(); @@ -167,18 +169,15 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { vcount++; String[] fields = line.split("\t"); - byte chrom = 0; - try { - chrom = (byte) refDict.getContigNameToID().get(fields[0]).intValue(); - } catch (NumberFormatException e) { - logger.error("Unable to parse chromosome: {}. Error occured parsing line: {}", fields[0], line); - logger.error("", e.getMessage()); - System.exit(1); - } - if (chrom > chromosome) { + byte chrom = parseChromosomeField(line, fields[0]); + + if (chrom < chromosome) { + continue; + } else if (chrom > chromosome) { break; } + Frequency previous = null; List frequencyPerLine = vcf2FrequencyParser.parseVCFline(line, chromosome); //TODO - once gone past chromosome should just break here rather than scanning for (Frequency frequency : frequencyPerLine) { @@ -187,7 +186,7 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { if (previous != null && previous.isIdenticalSNP(frequency)) { float x = previous.getMaximumFrequency(); float y = frequency.getMaximumFrequency(); - this.n_duplicates++; + numDuplicates++; if (y > x) { previous.resetFrequencyValues(frequency); } @@ -204,11 +203,10 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { startTime = now; } } - logger.info("Found " + n_exonic_vars + " exonic vars and " + n_non_exonic_vars + " non-exonics"); - logger.info("Got " + n_duplicates + " duplicates"); + logger.info("Got {} duplicates", numDuplicates); status = ResourceOperationStatus.SUCCESS; - + is.close(); } catch (FileNotFoundException ex) { logger.error(null, ex); status = ResourceOperationStatus.FILE_NOT_FOUND; @@ -220,6 +218,17 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { resource.setParseStatus(status); logger.info("{}", status); } + + private byte parseChromosomeField(String line, String chromField) { + byte chrom; + try { + chrom = refDict.getContigNameToID().get(chromField).byteValue(); + } catch (NumberFormatException e) { + String message = String.format("Unable to parse chromosome: %s. Error occured parsing line: %s", chromField, line); + throw new ResourceParserException(message, e); + } + return chrom; + } // /** // * This function is to be called following the processing of the VCF line // * with the function parseVCFline from the Superclass diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/DiseaseInheritanceCache.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/DiseaseInheritanceCache.java new file mode 100644 index 000000000..1da295207 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/DiseaseInheritanceCache.java @@ -0,0 +1,235 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.monarchinitiative.exomiser.core.prioritisers.model.InheritanceMode; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedReader; +import java.io.FileNotFoundException; +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.util.ArrayList; +import java.util.HashMap; +import java.util.List; +import java.util.Map; +import java.util.Map.Entry; + +/** + * This class has some common functionality for the OMIM and Orphanet parser + * classes. + * + * @author Peter Robinson + * @author Jules Jacobsen + * @version 0.01 (9 February 2014) + */ +public class DiseaseInheritanceCache implements ResourceParser { + + private static final Logger logger = LoggerFactory.getLogger(DiseaseInheritanceCache.class); + + private final Map hpoInheritanceCodes; + + /** + * Key: OMIM id (or Orphanet ID) for a disease, Value: InheritanceMode + */ + private Map diseaseInheritanceModeMap; + + public DiseaseInheritanceCache() { + hpoInheritanceCodes = setUpHpoInheritanceCodes(); + } + + private Map setUpHpoInheritanceCodes() { + Map map = new HashMap<>(); + //HP:0000005 is the root inheritance term - 'Mode of inheritance'. So not + //really unknown, but vague enough. + map.put("HP:0000005", InheritanceMode.UNKNOWN); + map.put("HP:0000007", InheritanceMode.AUTOSOMAL_RECESSIVE); + map.put("HP:0000006", InheritanceMode.AUTOSOMAL_DOMINANT); + map.put("HP:0001417", InheritanceMode.X_LINKED); + map.put("HP:0001419", InheritanceMode.X_RECESSIVE); + map.put("HP:0001423", InheritanceMode.X_DOMINANT); + map.put("HP:0001450", InheritanceMode.Y_LINKED); + map.put("HP:0001428", InheritanceMode.SOMATIC); + map.put("HP:0001427", InheritanceMode.MITOCHONDRIAL); + map.put("HP:0010982", InheritanceMode.POLYGENIC); + return map; + } + + @Override + public void parseResource(Resource resource, Path inDir, Path outDir) { + + Path phenotypeAnnotationFile = inDir.resolve(resource.getExtractedFileName()); + + ResourceOperationStatus status = setUpCache(phenotypeAnnotationFile); + + resource.setParseStatus(status); + logger.info("{}", status); + } + + + /** + * Get an appropriate inheritance code for the disease represented by + * phenID. Note that we return the code for somatic mutation only if AR and + * AD and X are not true. The same is for polygenic. + * + * Ensure that the parseResource() method has been successfully called before + * trying to + * + * @param diseaseId + * @return + */ + public InheritanceMode getInheritanceMode(Integer diseaseId) { + InheritanceMode inheritanceMode = diseaseInheritanceModeMap.get(diseaseId); + //maybe the disease hasn't been annotated so expect a null + if (inheritanceMode == null) { + inheritanceMode = InheritanceMode.UNKNOWN; + } + + return inheritanceMode; + } + + public boolean isEmpty() { + return diseaseInheritanceModeMap == null || diseaseInheritanceModeMap.isEmpty(); + } + /** + * Parse the file "phenotype_annotation.tab" in order to get the modes of + * inheritance that match the diseases. Skip lines that do not refer to OMIM + * or that are negated ("NOT"). Note we do not distinguish here between + * X-linked recessive and X-linked dominant. We go through one line at a + * time and look for annotations to modes of inheritance. The function will + * die if used with a parameter other than OMIM or Orphanet + * + * @param inFile String path to the file phenotype_annotation.tab + */ + private ResourceOperationStatus setUpCache(Path inFile) { + logger.info("Parsing inheritance modes from {} ", inFile); + //initialise this here to avoid the ability to get false negatives if + //getInheritanceMode is called before the cache is initialised. + //In which case a nullPointer will be thrown. + diseaseInheritanceModeMap = new HashMap<>(); + + Charset charSet = Charset.forName("UTF-8"); + try ( + BufferedReader br = Files.newBufferedReader(inFile, charSet)) { + + String line; + Integer diseaseId = null; + + //we're going to map each disease to all it's inheritance mode + //from the HPO annotations in the file + List inheritanceModes = new ArrayList<>(); + //and store them in this intermediate map + Map> intermadiateDiseaseInheritanceMap = new HashMap<>(); + //so let's parse... + while ((line = br.readLine()) != null) { +// System.out.println(line); + String[] fields = line.split("\t"); + if (fields[3].equals("NOT")) { + continue; + } + + Integer currentDiseaseId = Integer.parseInt(fields[1]); + //first line will have a null diseaseId + if (diseaseId == null) { + diseaseId = currentDiseaseId; + } + + //we've reached the end of this current set of disease annotations + if (!currentDiseaseId.equals(diseaseId)) { + //add the current disease and HPO annotations + intermadiateDiseaseInheritanceMap.put(diseaseId, inheritanceModes); + //reset the counters for the next set of disease annotations + diseaseId = currentDiseaseId; + inheritanceModes = new ArrayList<>(); + } + //get the hpo term + String hpoTerm = fields[4]; + //only add the known inheritance mode + InheritanceMode currentInheritance = hpoInheritanceCodes.getOrDefault(hpoTerm, InheritanceMode.UNKNOWN); //InheritanceMode.valueOfHpoTerm(hpoTerm); + if (currentInheritance != InheritanceMode.UNKNOWN) { + inheritanceModes.add(currentInheritance); + } + } + //remember to add the final disease + intermadiateDiseaseInheritanceMap.put(diseaseId, inheritanceModes); + //now we have the map of all diseases and theirt annotations we're going to extract the + //relevant inheritance modes and store these in the cache. + diseaseInheritanceModeMap = finaliseInheritanceModes(intermadiateDiseaseInheritanceMap); + } catch (FileNotFoundException ex) { + logger.error("Could not find phenotype_annotation.tab file at location {}", inFile, ex); + return ResourceOperationStatus.FILE_NOT_FOUND; + } catch (IOException ex) { + logger.error("Tried using Charset: {}", charSet); + logger.error("Could not read phenotype_annotation.tab file from {}", inFile, ex); + return ResourceOperationStatus.FAILURE; + } + + logger.debug(diseaseInheritanceModeMap.toString()); + return ResourceOperationStatus.SUCCESS; + } + + private Map finaliseInheritanceModes(Map> diseaseInheritanceMap) { + Map inheritanceMap = new HashMap<>(); + + for (Entry> entry : diseaseInheritanceMap.entrySet()) { + logger.debug("Mapping entry {} {}", entry.getKey(), entry.getValue()); + boolean isDominant = false; + boolean isRecessive = false; + InheritanceMode inheritanceMode = InheritanceMode.UNKNOWN; + //trim out the unknowns + for (InheritanceMode mode : entry.getValue()) { + //bizzarrely some diseases appear to be both dominant and recessive + if (mode == InheritanceMode.AUTOSOMAL_DOMINANT) { + isDominant = true; + } + if (mode == InheritanceMode.AUTOSOMAL_RECESSIVE) { + isRecessive = true; + } + if (mode != InheritanceMode.UNKNOWN) { + inheritanceMode = mode; + } + } + logger.debug("InheritanceModes for {}: Dominant:{} Recessive:{}", entry.getKey(), isDominant, isRecessive); + + //now decide the inheritance - this ordering is important as mainly + //we're interested in whether the disease is dominant or recessive in order to + //check wether the observed inheritance patterns of the exome sequences match + //that of the known disease. + if (isDominant && isRecessive) { + inheritanceMode = InheritanceMode.AUTOSOMAL_DOMINANT_AND_RECESSIVE; + } else if (isDominant) { + inheritanceMode = InheritanceMode.AUTOSOMAL_DOMINANT; + } else if (isRecessive) { + inheritanceMode = InheritanceMode.AUTOSOMAL_RECESSIVE; + } + logger.debug("Setting inheritanceMode for {} to {}", entry.getKey(), inheritanceMode); + + inheritanceMap.put(entry.getKey(), inheritanceMode); + + } + return inheritanceMap; + } +} diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EnsemblEnhancerParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EnsemblEnhancerParser.java new file mode 100644 index 000000000..d492b14e4 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EnsemblEnhancerParser.java @@ -0,0 +1,88 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.FileNotFoundException; +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; + +/** + * Parse the permissive enhancers file from Fantom + * + * @version 7.02 (14th December 2015) + * @author Damian Smedley + */ +public class EnsemblEnhancerParser implements ResourceParser { + + private static final Logger logger = LoggerFactory.getLogger(EnsemblEnhancerParser.class); + + public EnsemblEnhancerParser() { + } + + @Override + public void parseResource(Resource resource, Path inDir, Path outDir) { + + Path inFile = inDir.resolve(resource.getExtractedFileName()); + Path outFile = outDir.resolve(resource.getParsedFileName()); + + logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile); + ResourceOperationStatus status; + + try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.forName("UTF-8")); + BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { + String line; + while ((line = reader.readLine()) != null) { + if (line.startsWith("KI")){ + continue; + } + line = line.replaceAll("\t", "|"); + line = line.replace("X|", "23|"); + line = line.replace("Y|", "24|"); + writer.write(line); + writer.newLine(); + } + writer.close(); + reader.close(); + status = ResourceOperationStatus.SUCCESS; + } catch (FileNotFoundException ex) { + logger.error(null, ex); + status = ResourceOperationStatus.FILE_NOT_FOUND; + } catch (IOException ex) { + logger.error(null, ex); + status = ResourceOperationStatus.FAILURE; + } + + resource.setParseStatus(status); + + logger.info( + "{}", status); + } + +} diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EntrezParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EntrezParser.java new file mode 100644 index 000000000..6e23be85f --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EntrezParser.java @@ -0,0 +1,129 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.FileNotFoundException; +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.util.*; + +/** + * + */ +public class EntrezParser implements ResourceParser { + + private static final Logger logger = LoggerFactory.getLogger(EntrezParser.class); + private final Map> ensembl2EntrezGene; + + /** + * @param ensembl2EntrezGene + */ + public EntrezParser(Map> ensembl2EntrezGene) { + this.ensembl2EntrezGene = ensembl2EntrezGene; + } + + /** + * This function does the actual work of parsing the Entrez data. + * + * @param resource Resource containing the information about + * @param inDir Directory path to string file. + * @param outDir Directory where output file is to be written + */ + @Override + public void parseResource(Resource resource, Path inDir, Path outDir) { + + Path inFile = inDir.resolve(resource.getExtractedFileName()); + Path outFile = outDir.resolve(resource.getParsedFileName()); + + logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile); + + Map entrez2sym = new HashMap<>(); + ResourceOperationStatus status; + + try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.defaultCharset()); + BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { + String line; + while ((line = reader.readLine()) != null) { + String[] split = line.split("\t"); + if (split.length != 3) { + continue; + } + String ens = split[0]; + Integer entrez = null; + if (split[1].equals("")) { + continue; + } + try { + entrez = Integer.parseInt(split[1]); + } catch (NumberFormatException e) { + logger.error("Malformed line: {} (could not parse entrez gene field: '{}')", line, split[1]); + } + + if (split[2] == null || split[2].isEmpty()) { + logger.warn("Could not extract symbol, skipping line: {}", line); + } + String symbol = split[2]; + entrez2sym.put(entrez, symbol); + if (this.ensembl2EntrezGene.containsKey(ens)) { + List test = this.ensembl2EntrezGene.get(ens); + if (!test.contains(entrez)) { + test.add(entrez); + } + } else { + List lst = new ArrayList<>(); + lst.add(entrez); + this.ensembl2EntrezGene.put(ens, lst); + } + } + + Iterator it = entrez2sym.keySet().iterator(); + while (it.hasNext()) { + Integer id = it.next(); + if (id == null) { + continue; + } + String sym = entrez2sym.get(id); + writer.write(String.format("%s|%s", id, sym)); + writer.newLine(); + } + writer.close(); + reader.close(); + status = ResourceOperationStatus.SUCCESS; + } catch (FileNotFoundException ex) { + logger.error(null, ex); + status = ResourceOperationStatus.FILE_NOT_FOUND; + } catch (IOException ex) { + logger.error(null, ex); + status = ResourceOperationStatus.FAILURE; + } + resource.setParseStatus(status); + logger.info("{}", status); + } +} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EspFrequencyParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EspFrequencyParser.java similarity index 84% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EspFrequencyParser.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EspFrequencyParser.java index d43d2e1e2..5d069bdab 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/EspFrequencyParser.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/EspFrequencyParser.java @@ -1,9 +1,31 @@ -package de.charite.compbio.exomiser.db.parsers; +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; -import de.charite.compbio.exomiser.db.reference.Frequency; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; import de.charite.compbio.jannovar.data.ReferenceDictionary; +import org.monarchinitiative.exomiser.db.reference.Frequency; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; import java.io.BufferedReader; import java.io.FileNotFoundException; @@ -17,9 +39,6 @@ import java.util.Comparator; import java.util.List; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - /** * This class is for parsing the ESP file * {@code ESP6500SI.snps_indels.vcf.tar.gz} (the VCF file with the Exome Server @@ -55,7 +74,7 @@ public class EspFrequencyParser implements ResourceParser { * add them to this list until we are finished and then join the two lists. */ private List espFrequencyList; - private byte chromosome; + private byte chromosome; /** * This object is used to allow binary searches on the FrequencyList */ @@ -194,11 +213,11 @@ private ResourceOperationStatus parseEspFile(Path espFile) { * finished, we need to merge the two lists and sort the merged list. */ private void mergeAndSortFrequencyObjects() { - logger.info("mergeAndSortFrequencyObjects"); - logger.info("Original size of frequencyList: " + frequencyList.size()); - logger.info("Size of ESP derived Frequency list: " + espFrequencyList.size()); + logger.info("mergeAndSortFrequencyObjects for chromosome {}", chromosome); + logger.info("Original size of frequencyList: {}", frequencyList.size()); + logger.info("Size of ESP derived Frequency list: {}", espFrequencyList.size()); frequencyList.addAll(espFrequencyList); - logger.info("After merge size of frequencyList: " + frequencyList.size()); + logger.info("After merge size of frequencyList: {}", frequencyList.size()); Collections.sort(frequencyList); } diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ExACFrequencyParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ExACFrequencyParser.java similarity index 80% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ExACFrequencyParser.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ExACFrequencyParser.java index 8555e0626..3b7af773b 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/ExACFrequencyParser.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ExACFrequencyParser.java @@ -1,21 +1,40 @@ -package de.charite.compbio.exomiser.db.parsers; +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import de.charite.compbio.exomiser.db.reference.Frequency; -import de.charite.compbio.exomiser.db.resources.Resource; import de.charite.compbio.jannovar.data.ReferenceDictionary; -import java.io.BufferedReader; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.io.InputStream; -import java.io.InputStreamReader; +import org.monarchinitiative.exomiser.db.reference.Frequency; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.*; import java.nio.channels.FileChannel; import java.nio.file.Path; -import java.util.*; +import java.util.ArrayList; +import java.util.Collections; +import java.util.Comparator; +import java.util.List; import java.util.zip.GZIPInputStream; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; /** * This class is designed to parseResource the dbSNP file {@code 00-All.vcf} @@ -38,7 +57,7 @@ public class ExACFrequencyParser implements ResourceParser { * because they are exonic */ private final List frequencyList; - + private final VCF2FrequencyParser vcf2FrequencyParser; /* @@ -48,7 +67,7 @@ public class ExACFrequencyParser implements ResourceParser { private List exACFrequencyList; private byte chromosome; private final ReferenceDictionary refDict; - + /** * This object is used to allow binary searches on the FrequencyList */ @@ -77,7 +96,7 @@ public ExACFrequencyParser(ReferenceDictionary refDict, List frequenc */ @Override public void parseResource(Resource resource, Path inDir, Path outDir) { - + Path inFile = inDir.resolve(resource.getExtractedFileName()); Path outFile = outDir.resolve(resource.getParsedFileName()); @@ -125,11 +144,13 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { logger.error("", e.getMessage()); System.exit(1); } - if (chrom > chromosome) { + if (chrom < chromosome) { + continue; + } else if (chrom > chromosome) { break; - } + } List frequencyPerLine = vcf2FrequencyParser.parseVCFline(line,chromosome); - + for (Frequency frequency : frequencyPerLine) { int idx = Collections.binarySearch(frequencyList, frequency, comparator); if (idx < 0) { @@ -181,13 +202,13 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { * finished, we need to merge the two lists and sort the merged list. */ private void mergeAndSortFrequencyObjects() { - logger.info("mergeAndSortFrequencyObjects"); - logger.info("Original size of frequencyList: " + frequencyList.size()); - logger.info("Size of ExAC derived Frequency list: " + exACFrequencyList.size()); + logger.info("mergeAndSortFrequencyObjects for chromosome {}", chromosome); + logger.info("Original size of frequencyList: {}", frequencyList.size()); + logger.info("Size of ExAC derived Frequency list: {}", exACFrequencyList.size()); frequencyList.addAll(exACFrequencyList); - logger.info("After merge size of frequencyList: " + frequencyList.size()); + logger.info("After merge size of frequencyList: {}", frequencyList.size()); Collections.sort(frequencyList); } - - + + } diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/FantomEnhancerParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/FantomEnhancerParser.java new file mode 100644 index 000000000..10292c5ed --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/FantomEnhancerParser.java @@ -0,0 +1,115 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.FileNotFoundException; +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; + +/** + * Parse the permissive enhancers file from Fantom + * + * @version 7.02 (14th December 2015) + * @author Damian Smedley + */ +public class FantomEnhancerParser implements ResourceParser { + + private static final Logger logger = LoggerFactory.getLogger(FantomEnhancerParser.class); + + public FantomEnhancerParser() { + } + + @Override + public void parseResource(Resource resource, Path inDir, Path outDir) { + + Path inFile = inDir.resolve(resource.getExtractedFileName()); + Path outFile = outDir.resolve(resource.getParsedFileName()); + + logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile); + ResourceOperationStatus status; + + try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.forName("UTF-8")); + BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { + // read in array of tissues from header + String line = reader.readLine(); + String[] tissues = line.split(","); + while ((line = reader.readLine()) != null) { + line = line.replaceAll("\n", "");// ? strip off newline first + String[] lineParts = line.split(","); + int i = 0; + String chr = ""; + String start = ""; + String end = ""; + for (String linePart : lineParts) { + if (i == 0) { + linePart = linePart.replaceAll("\"", ""); + String[] parts = linePart.split(":"); + chr = parts[0]; + chr = chr.replace("chr", ""); + if (chr.equals("X")) { + chr = "23"; + } else if (chr.equals("y")) { + chr = "24"; + } + String[] positions = parts[1].split("-"); + start = positions[0]; + end = positions[1]; + + } else if (linePart.equals("1")) { + writer.write(String.format("%s|%s|%s|%s", chr, start, end, "FANTOM permissive")); + writer.newLine(); + break; + // if want to reinstate tissue-specific parts in table then add a row for every tissue instead +// String tissue = tissues[i]; +// tissue = tissue.replace("\"", ""); +// writer.write(String.format("%s|%s|%s|%s|%s", chr, start, end, "FANTOM permissive", tissue)); +// writer.newLine(); + } + i++; + } + } + writer.close(); + reader.close(); + status = ResourceOperationStatus.SUCCESS; + } catch (FileNotFoundException ex) { + logger.error(null, ex); + status = ResourceOperationStatus.FILE_NOT_FOUND; + } catch (IOException ex) { + logger.error(null, ex); + status = ResourceOperationStatus.FAILURE; + } + + resource.setParseStatus(status); + + logger.info( + "{}", status); + } + +} \ No newline at end of file diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/HGMDParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/HGMDParser.java new file mode 100644 index 000000000..926484732 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/HGMDParser.java @@ -0,0 +1,228 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; + + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.*; +import java.util.HashMap; +import java.util.Iterator; +import java.util.Map; + + +/** + * Parse files from the Human Gene Mutation Database. The profile has the following structure. + * + *

      + *
    1. Disease Name (e.g., Hyperinsulinism ) + *
    2. Gene symbol (e.g., ABCC8) + *
    3. Chromosome band (e.g., 11p15.1) + *
    4. Gene name (e.g., ATP-binding cassette, sub-family C (CFTR/MRP), member 8 (sulphonylurea receptor, SUR)) + *
    5. 591370 (seems to be a Human Genome Database ID; the HGD no longer exists) + *
    6. 600509 (OMIM Gene id) + *
    7. Ala-Val (amino acid change) + *
    8. \N + *
    9. \N + *
    10. 163 (amino acid position) + *
    11. 163 (amino acid position) + *
    12. Ala163Val (protein mutation, 3 letter code) + *
    13. 488C>T (c.DNA mutation) + *
    14. 488CtoT (cDNA mutation in English words, 1 letter code) + *
    15. A163V (protein mutation) + *
    16. rs72466448 (dbSNP id) + *
    17. 11 (chromosomal location of gene) +*
    18. 17415243 (start position of mutation) +*
    19. 17415243 (end position of mutation) +*
    20. DM? (DM: disease-causing mutations; DP:disease-associated polymorphisms; DFP: disease-associated polymorphisms +* , and FP: in vitro/laboratory or in vivo functional polymorphisms). +*
    21. Yorifuji (Name of first author) +*
    22. J Clin Endocrinol Metab (journal abbreviation) +*
    23. The Journal of clinical endocrinology and metabolism (journal full name) +*
    24. 96 (volume) +*
    25. E141 (page) +*
    26. 2011 (year) +*
    27. 20943781 (pmid) +*
    28. PRI (?) +*
    29. \N +*
    30. CS110251 +*
    31. 2011-01-13 +*
    32. S +*
    + * @version 0.04 (28 November, 2013) + * @author Peter Robinson + * + */ +public class HGMDParser { + + private static final Logger logger = LoggerFactory.getLogger(HGMDParser.class); + + /* Path to HGMD's allmut.txt pro file. + private String hgmdProPath=null; + /** FileWriter for the hgmd-pro.pg "dump" file */ + private FileWriter fstream =null; + /** BufferedWriter for the hgmd-pro.pg "dump" file */ + private BufferedWriter out =null; + + private int currentNumber; + + private Map id2DiseaseMap=null; + + public HGMDParser() { + this.id2DiseaseMap = new HashMap(); + this.currentNumber = 1; + } + + + private void initializeOutFileHandle(String outname) throws IOException { + this.fstream = new FileWriter(outname); + this.out = new BufferedWriter(this.fstream); + } + + + private Integer getDiseaseGeneID(String diseasename, String genesym) { + String s = String.format("%s|%s",diseasename, genesym); + Integer id = this.id2DiseaseMap.get(s); + if (id == null) { /* We have not seen this string before */ + id = new Integer(this.currentNumber); + this.currentNumber++; + this.id2DiseaseMap.put(s,id); + } + return id; + } + + private void outputDiseaseGeneDumpFile() throws IOException { + String outname="hgmddisease.pg"; + initializeOutFileHandle(outname); + Iterator it = this.id2DiseaseMap.keySet().iterator(); + while (it.hasNext()) { + String disease = it.next(); + Integer id = this.id2DiseaseMap.get(disease); + int i = disease.indexOf("|"); + if (i<0) { + logger.error("Could not parse HGMD disease/gene string: {}", disease); + System.exit(1); + } + String dis = disease.substring(0,i); + String gs = disease.substring(i+1); + String s = String.format("%d|%s|%s",id,dis,gs); + //System.out.println(s); + out.write(s + "\n"); + } + this.out.close(); + + } + + + /** This function parses the HGMD Pro file and creates a "dump" file that can be used to + * populate the postgreSQL database. + * See the setup documentation for instructions on how to import the outputfile, which + * is called hgmdpro.pg to the database. + * @param path Path to the allmut.txt file of HGMD. + */ + public void parseHGMDProFile(String path) { + logger.info("Parsing HGMD Pro File: {}", path); + try{ + /* The infile */ + FileInputStream fstr = new FileInputStream(path); + //DataInputStream in = new DataInputStream(fstream); + BufferedReader br = new BufferedReader(new InputStreamReader(fstr)); + String outname="hgmdpro.pg"; + initializeOutFileHandle(outname); + String line = br.readLine(); + + /* Skip up to the first Term stanza. */ + String diseasename=null; + String gensym=null; /* Gene Symbol */ + String cDNAmut=null; /* e.g., 461A>G */ + String aaMut=null; /* e.g., Q154R */ + String chr=null; + String start=null; + String end=null; + String pmid=null; + int c = 0; + int bad=0; + int no_pmid=0; + logger.info("Parsing HGMD Pro File ready {}", br.ready() ); + while ((line = br.readLine()) != null) { + String[] fields = line.split("!"); + if (fields.length<27) { + //System.out.println("Error parsing line with less than 30 fields:\n" + line + "\n\t=>Had only " + F.length + " fields"); + bad++; + continue; + } + diseasename=fields[0]; + gensym=fields[1]; + cDNAmut=fields[12]; + aaMut=fields[11]; + chr=fields[15]; + start=fields[16]; + end=fields[17]; + pmid=fields[25]; + + switch (chr) { + case "X": + chr = "23"; + break; + case "Y": + chr = "24"; + break; + case "M": + chr="25"; + break; + } + + Integer pubmedInt = null; + try { + pubmedInt = Integer.parseInt(pmid); + } catch (NumberFormatException e) { + //System.out.println("Difficulties parsing line:\n"+line); + //e.printStackTrace(); + no_pmid++; + pmid="-1"; /* flag for no pmid given */ + } + + if (diseasename==null || gensym == null) { + logger.error("Disease or gene sym null on line\n{}\n", line); + continue; + } + Integer id = getDiseaseGeneID(diseasename,gensym); + String s = String.format("%d|%s|%s|%s|%s|%s",id,cDNAmut,aaMut,chr,start,pmid); + //System.out.println(s); + out.write(s + "\n"); + c++; + if (c % 5000 == 0) + logger.info("Parsed {} HGMD mutations", c); + } + br.close(); + this.out.close(); + logger.info("Parsed {} mutations and skipped {} malformed lines, and did not find pmid for {} mutations", c, bad, no_pmid); + outputDiseaseGeneDumpFile(); + } catch (IOException e) { + logger.error("{}", e); + System.exit(1); + } + + } + + +} \ No newline at end of file diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/HPOOntologyFileParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/HPOOntologyFileParser.java similarity index 81% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/HPOOntologyFileParser.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/HPOOntologyFileParser.java index 0212a13c4..a3abc2191 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/HPOOntologyFileParser.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/HPOOntologyFileParser.java @@ -1,15 +1,39 @@ -package de.charite.compbio.exomiser.db.parsers; +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.io.*; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.FileNotFoundException; +import java.io.IOException; import java.nio.charset.Charset; import java.nio.file.Files; import java.nio.file.Path; import java.util.ArrayList; import java.util.List; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; /** * Parse the good old human-phenotype-ontology.obo file (or alternatively the @@ -44,7 +68,7 @@ public HPOOntologyFileParser() { * @param resource * @param inDir Complete path to directory containing the human-phenotype-ontology.obo or hp.obo file. * @param outDir Directory where output file is to be written - * @return + * @return */ @Override public void parseResource(Resource resource, Path inDir, Path outDir) { @@ -56,8 +80,8 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { ResourceOperationStatus status; try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.forName("UTF-8")); - BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { - + BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { + int termCount = 0; /* count of terms */ String line; @@ -110,7 +134,7 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { } writer.close(); reader.close(); - logger.info("Parsed {} term names/synonyms.", termCount); + logger.info("Parsed {} term names/synonyms.", termCount); status = ResourceOperationStatus.SUCCESS; } catch (FileNotFoundException ex) { logger.error(null, ex); diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MetaDataParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MetaDataParser.java new file mode 100644 index 000000000..389ddb5a0 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MetaDataParser.java @@ -0,0 +1,87 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedWriter; +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.time.Instant; + +/** + * Creates a pipe delimited file of resource|version + * @author Jules Jacobsen + */ +public class MetaDataParser implements ResourceParser { + + private static final Logger logger = LoggerFactory.getLogger(MetaDataParser.class); + + private final Iterable externalResources; + private final Resource metaDataResource; + + public MetaDataParser (Resource metaDataResource, Iterable externalResources) { + this.metaDataResource = metaDataResource; + this.externalResources = externalResources; + } + + @Override + public void parseResource(Resource metaDataResource, Path inDir, Path outDir) { + + Path outFile = outDir.resolve(metaDataResource.getParsedFileName()); + + logger.info("Parsing {}. Writing out to: {}", metaDataResource.getName(), outFile); + ResourceOperationStatus status; + try ( + BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) { + + for (Resource resource : externalResources) { + String version = resource.getVersion(); + + if (version == null || version.isEmpty()) { + Instant now = Instant.now(); + version = now.toString(); + } + logger.info("Resource: {} Version: {}", resource.getName(), version); + writer.write(String.format("%s|%s%n", resource.getName(), version)); + } + status = ResourceOperationStatus.SUCCESS; + } catch (IOException ex) { + logger.error("Error parsing external resources MetaData", ex); + status = ResourceOperationStatus.FAILURE; + } + metaDataResource.setParseStatus(status); + logger.info("{}", status); + } + + +} diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MimToGeneParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MimToGeneParser.java new file mode 100644 index 000000000..b2db8425f --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MimToGeneParser.java @@ -0,0 +1,151 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.BufferedReader; +import java.io.FileNotFoundException; +import java.io.IOException; +import java.nio.charset.Charset; +import java.nio.file.Files; +import java.nio.file.Path; +import java.util.Map; +import java.util.Set; +import java.util.TreeSet; + +/** + * This class is designed to parseResource two files from OMIM in order to + * extract information that links OMIM ids to Entrez Gene ids. The format of the + * mim2gene file is as follows: + *
    + * #Format: MIM_number GeneID type (tab is used as a separator, pound sign - start of a comment)
    + * 100070	100329167	gene
    + * 100100	1131	phenotype
    + * 100300	57514	phenotype
    + * 100300	100188340	gene
    + * 100640	216	gene
    + * 
    In this example, the OMIM entry 100300 is a phenotype entry for + * Adams-Oliver syndrome 1 (AOS1). It is associated with the gene gene ARHGAP31, + * which has the NCBI Entrez Gene id 57514. The next line shows 100188340, which + * is the Entrez gene id for Adams Oliver syndrome (Note: It is strange and + * unhelpful that Entrez Gene now seems to be giving some diseases gene ids...). + *

    + * The morbidmap file has the following format + *

    + * Abetalipoproteinemia, 200100 (3)  |MTP|157147|4q22-q24
    + * Acampomelic campomelic dysplasia, 114290 (3)  |SOX9, CMD1, SRA1|608160|17q24.3-q25.1
    + * 
    For example, the entry 114290 is the disease entry for campomelic + * dysplasia, and the entry 608160 is the gene entry for the disease gene SOX9. + * Note that we now additionally take the file phenotype_annotation.tab from the + * HPO project in order to parseResource out whether OMIM or Orphanet entries + * follow a recessive, dominant or X chromosomal inheritance. + * + * @author Peter N Robinson + * @version 0.07 (9 February, 2014) + */ +public class MimToGeneParser implements ResourceParser { + + private static final Logger logger = LoggerFactory.getLogger(MimToGeneParser.class); + + Map> mim2geneMap; + + /** + * Key: A MIM id for a Gene; Value: the corresponding entrez Gene id. This + * information comes from mim2gene.txt + * + * @param mim2geneMap + */ + public MimToGeneParser(Map> mim2geneMap) { + this.mim2geneMap = mim2geneMap; + } + + /** + * Parse OMIMs mim2gene.txt file. A typical line is + *
    +     * # MIM Number	MIM Entry Type (see FAQ 1.3 at https://omim.org/help/faq)	Entrez Gene ID (NCBI)	Approved Gene Symbol (HGNC)	Ensembl Gene ID (Ensembl)
    +     * 100850  gene    50      ACO2    ENSG00000100412
    +     * 
    The first number is the MIM number, the second field tells us + * whether the entry is a gene or a phenotype, the third entry is the Entrez + * Gene ID, and the fourth field is the gene symbol. Note the we + * parseResource this file exclusively for the phenotype to gene relations, + * meaning we only use the lines that have with the keyword "gene" in the second column. + */ + @Override + public void parseResource(Resource resource, Path inDir, Path outDir) { + + Path inFile = inDir.resolve(resource.getExtractedFileName()); + Path outFile = outDir.resolve(resource.getParsedFileName()); + + logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile); + + ResourceOperationStatus status; + + try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.defaultCharset())) { + String line; + while ((line = reader.readLine()) != null) { + //ignore comment lines + if (!line.startsWith("#")) { + parseLine(line); + } + } + logger.info("Extracted {} genes from {}", mim2geneMap.size(), inFile); + status = ResourceOperationStatus.SUCCESS; + + } catch (FileNotFoundException ex) { + logger.error("Unable to find file: {}", inFile, ex); + status = ResourceOperationStatus.FILE_NOT_FOUND; + } catch (IOException ex) { + logger.error("Error parsing file: {}", inFile, ex); + status = ResourceOperationStatus.FAILURE; + } + + resource.setParseStatus(status); + logger.info("{}", status); + + } + + private void parseLine(String line) { + String[] fields = line.split("\t"); + try { + String type = fields[1].trim(); + /* The following gets both "gene" and "gene/phenotype" */ + if (type.startsWith("gene") && fields.length == 5) { + // typical line: 100850 gene 50 ACO2 ENSG00000100412 + Integer mim = Integer.parseInt(fields[0]); + Integer entrezGeneId = Integer.parseInt(fields[2]); // Entrez Gene ID */ + if (mim2geneMap.containsKey(mim)) { + mim2geneMap.get(mim).add(entrezGeneId); + } else { + Set geneSet = new TreeSet<>(); + geneSet.add(entrezGeneId); + mim2geneMap.put(mim, geneSet); + } + } + } catch (NumberFormatException e) { + logger.error("{}", e); + } + } + +} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MorbidMapParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MorbidMapParser.java similarity index 85% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MorbidMapParser.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MorbidMapParser.java index 900e1f705..c4a4c032b 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/MorbidMapParser.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/MorbidMapParser.java @@ -1,22 +1,46 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.parsers; +package org.monarchinitiative.exomiser.db.parsers; -import de.charite.compbio.exomiser.core.model.InheritanceMode; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; +import org.monarchinitiative.exomiser.core.prioritisers.model.InheritanceMode; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; -import java.io.*; +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.FileNotFoundException; +import java.io.IOException; import java.nio.charset.Charset; import java.nio.file.Files; import java.nio.file.Path; -import java.util.*; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; +import java.util.HashSet; +import java.util.Map; +import java.util.Set; /** * Parses the OMIM morbid map file. @@ -28,7 +52,7 @@ public class MorbidMapParser implements ResourceParser { private static final Logger logger = LoggerFactory.getLogger(MorbidMapParser.class); private static final int NO_DISEASE_ID = -10; - + private final DiseaseInheritanceCache diseaseInheritanceCache; private final Map> mim2geneMap; @@ -61,7 +85,7 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { logger.info("{}", status); return; } - + if (mim2geneMap.isEmpty()) { logger.error("Aborting attempt to parse morbidmap file as the required mim2geneMap is empty."); status = ResourceOperationStatus.FAILURE; @@ -69,19 +93,22 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { logger.info("{}", status); return; } - + // A heuristic to avoid duplicate entries. Set seen = new HashSet<>(); - + try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.defaultCharset()); - BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())){ + BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())){ String line; + // expected format + // # Phenotype Gene Symbols MIM Number Cyto Location + // 17,20-lyase deficiency, isolated, 202110 (3) CYP17A1, CYP17, P450C17 609300 10q24.32 while ((line = reader.readLine()) != null) { if (line.startsWith("#")) { continue; // comment. } - String[] fields = line.split("\\|"); + String[] fields = line.split("\\t"); if (fields.length != 4) { logger.error("Malformed morbid map line: {}", line); logger.error("Expected 4 fields per line but got {}", fields.length); @@ -96,7 +123,7 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { logger.debug("diseaseString = {}", diseaseString); int i = diseaseString.lastIndexOf(','); /* This means there is probably a MIM number */ - if (i > 0) { + if (i > 0) { disease = diseaseString.substring(0, i).trim(); phenMIM = diseaseString.substring(i + 1).trim(); @@ -134,7 +161,7 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { } if (associatedEntrezGeneIds == null || associatedEntrezGeneIds.isEmpty()) { // No entrez gene link - continue; + continue; } if (genemim < 0) { continue; @@ -166,7 +193,7 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { } resource.setParseStatus(status); logger.info("{}", status); - + } /** diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/NSFP2SQLDumpParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/NSFP2SQLDumpParser.java similarity index 90% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/NSFP2SQLDumpParser.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/NSFP2SQLDumpParser.java index 224d5529f..9e42e2d50 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/NSFP2SQLDumpParser.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/NSFP2SQLDumpParser.java @@ -1,25 +1,38 @@ -package de.charite.compbio.exomiser.db.parsers; +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db.parsers; -import de.charite.compbio.exomiser.db.reference.VariantPathogenicity; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import de.charite.compbio.jannovar.data.ReferenceDictionary; +import org.monarchinitiative.exomiser.db.reference.VariantPathogenicity; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; -import java.io.BufferedReader; -import java.io.BufferedWriter; -import java.io.FileInputStream; -import java.io.FileNotFoundException; -import java.io.IOException; -import java.io.InputStreamReader; +import java.io.*; import java.nio.charset.Charset; import java.nio.file.Files; import java.nio.file.Path; import java.util.zip.ZipEntry; import java.util.zip.ZipInputStream; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; - /** * Parse information from the NSFP chromosome files. Create an SQL dump file * that will be used to import the information into the postgreSQL database. @@ -104,12 +117,12 @@ public class NSFP2SQLDumpParser implements ResourceParser { * smaller than 0.5 and "deleterious" if the score is larger than 0.5. * Multiple entries separated by ";". */ - private static int POLYPHEN2_HVAR_SCORE = 29;//28 + private static int POLYPHEN2_HVAR_SCORE = 32;//28 /** * MutationTaster score */ - private static int MUTATION_TASTER_SCORE = 35;//33 + private static int MUTATION_TASTER_SCORE = 39;//33 /** * MutationTaster prediction, "A" ("disease_causing_automatic"), "D" @@ -119,16 +132,16 @@ public class NSFP2SQLDumpParser implements ResourceParser { * "N" or "P", we set the mutation score to zero. If the score is "A" or * "D", we report the score as given in dbNSFP. */ - private static int MUTATION_TASTER_PRED = 37;//35 + private static int MUTATION_TASTER_PRED = 41;//35 /** * Total number of fields in the dbNSFP database */ - private static int N_NSFP_FIELDS = 86;//59 + private static int N_NSFP_FIELDS = 471;//59 - private static int CADD_raw = 51; + private static int CADD_raw = 76; - private static int CADD_raw_rankscore = 52; + private static int CADD_raw_rankscore = 77; /** * This variable will contain values such as A3238732G that represent the @@ -183,16 +196,6 @@ public int getGeneCount() { return totalGenesCount; } - /** - * The constructor initializes the File output streams. - * - * @param refDict - * the {@link ReferenceDictionary} to use for converting contig names to numeric ids - */ - public NSFP2SQLDumpParser() {//ReferenceDictionary refDict) { - //this.refDict = refDict; - } - @Override public void parseResource(Resource resource, Path inDir, Path outDir) { @@ -220,6 +223,11 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { //try to autodetect the column positions for the parser setParseFields(line); } else { + String[] fields = line.split("\t"); + if (fields[CHR].equals(".")){ + // no hg19 coordinates present + continue; + } VariantPathogenicity pathogenicity = parseLine(line); writer.write(pathogenicity.toDumpLine()); } @@ -246,12 +254,13 @@ public void parseResource(Resource resource, Path inDir, Path outDir) { * @param line * @return */ - VariantPathogenicity parseLine(String line) { + private VariantPathogenicity parseLine(String line) { String[] fields = line.split("\t"); if (fields.length < N_NSFP_FIELDS) { - logger.error("Malformed line '{}' - Only {} fields found (expecting {})", line, fields.length, N_NSFP_FIELDS); - System.exit(1); + String message = String.format("Malformed line '%s' - Only %d fields found (expecting %d)", line, fields.length, N_NSFP_FIELDS); + logger.error(message); + throw new ResourceParserException(message); } //variant position /* if work out what Jules was doing with ReferenceDictionary @@ -509,4 +518,5 @@ private void setParseFields(String line) { } } + } diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/Omim2GeneParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/Omim2GeneParser.java similarity index 75% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/Omim2GeneParser.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/Omim2GeneParser.java index 48afa66d1..362e39ddb 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/Omim2GeneParser.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/Omim2GeneParser.java @@ -1,12 +1,35 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.parsers; +package org.monarchinitiative.exomiser.db.parsers; + +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; import java.io.BufferedReader; import java.io.BufferedWriter; import java.io.FileNotFoundException; @@ -16,8 +39,6 @@ import java.nio.file.Path; import java.util.HashSet; import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; /** * ResourceParser for the pheno2gene.txt file which produces the omim2gene.pg dump file, @@ -43,7 +64,7 @@ *
  • Gene symbol of the Entrez Gene entry (should match one of the items in * field 7). * - * + * * and produces a pipe delimited file of this format: *
      * 614222|Warburg micro syndrome 3|10p12.1|602207|22931|RAB18|600118
    @@ -54,8 +75,8 @@
     public class Omim2GeneParser implements ResourceParser {
     
         private static final Logger logger = LoggerFactory.getLogger(Omim2GeneParser.class);
    -    
    -    
    +
    +
         @Override
         public void parseResource(Resource resource, Path inDir, Path outDir) {
             //you might notice that the code here is pretty similar to that in the 
    @@ -64,40 +85,40 @@ public void parseResource(Resource resource, Path inDir, Path outDir) {
             //But done to fit the parseResource() paradigm. Peter did it better before-hand 
             //(i.e. one class only), but it produced two different tables. Given this is static data we're parsing
             //and it's likely to be depricated at some point this is hopefully not too evil.
    -        
    +
             Path inFile = inDir.resolve(resource.getExtractedFileName());
             Path outFile = outDir.resolve(resource.getParsedFileName());
     
             logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile);
     
             ResourceOperationStatus status;
    -        
    +
             try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.defaultCharset());
    -                BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) {
    -                
    +             BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) {
    +
                 Set uniqueSeriesIds = new HashSet<>();
    -            
    +
                 String line;
                 while ((line = reader.readLine()) != null) {
                     logger.debug(line);
                     String[] fields = line.split("\\|");
    -        //        "INSERT INTO omim2gene(mimDiseaseID, mimDiseaseName,cytoBand,mimGeneID,entrezGeneID,geneSymbol,seriesID) "+
    +                //        "INSERT INTO omim2gene(mimDiseaseID, mimDiseaseName,cytoBand,mimGeneID,entrezGeneID,geneSymbol,seriesID) "+
                     final int expectedFields = 10;
                     if (fields.length != expectedFields) {
                         logger.error("Expected {} fields but got {} for line {}", expectedFields, fields.length, line);
                         continue;
                     }
    -                
    -		String seriesId = fields[1];
    -		String cytoBand = fields[2];
    -		String mimDiseaseName = fields[3];
    -		String mimDiseaseId = fields[5];
    -		String mimGeneId = fields[7];
    -		String entrezGeneId = fields[8];
    -		String geneSymbol = fields[9];
    -                
    +
    +                String seriesId = fields[1];
    +                String cytoBand = fields[2];
    +                String mimDiseaseName = fields[3];
    +                String mimDiseaseId = fields[5];
    +                String mimGeneId = fields[7];
    +                String entrezGeneId = fields[8];
    +                String geneSymbol = fields[9];
    +
                     String uniqueSeriesId = String.format("%s-%s", seriesId, mimDiseaseId);
    -                
    +
                     if (entrezGeneId.equals("?")) {
                         logger.debug("No Entrez gene mapped for phenoseries: {} diseaseId: {} MIM gene: {} location: {} name:{}", seriesId, mimDiseaseId, mimGeneId, cytoBand, mimDiseaseName); // No gene for this entry
                     } else if (uniqueSeriesIds.contains(uniqueSeriesId)) {
    @@ -118,7 +139,7 @@ public void parseResource(Resource resource, Path inDir, Path outDir) {
                 logger.error(null, ex);
                 status = ResourceOperationStatus.FAILURE;
             }
    -        
    +
             logger.info("{}", status);
             resource.setParseStatus(status);
         }
    diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/OmimResourceGroupParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/OmimResourceGroupParser.java
    new file mode 100644
    index 000000000..b306fd35d
    --- /dev/null
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/OmimResourceGroupParser.java
    @@ -0,0 +1,105 @@
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +/*
    + * To change this license header, choose License Headers in Project Properties.
    + * To change this template file, choose Tools | Templates
    + * and open the template in the editor.
    + */
    +
    +package org.monarchinitiative.exomiser.db.parsers;
    +
    +import org.monarchinitiative.exomiser.db.resources.Resource;
    +import org.monarchinitiative.exomiser.db.resources.ResourceGroup;
    +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus;
    +import org.slf4j.Logger;
    +import org.slf4j.LoggerFactory;
    +import org.springframework.stereotype.Component;
    +
    +import java.nio.file.Path;
    +import java.util.HashMap;
    +import java.util.Map;
    +import java.util.Set;
    +
    +/**
    + *
    + * @author Jules Jacobsen 
    + */
    +@Component
    +public class OmimResourceGroupParser extends AbstractResourceGroupParser implements ResourceGroupParser {
    +
    +    public static final String NAME = "OMIM";
    +
    +    private static final Logger logger = LoggerFactory.getLogger(OmimResourceGroupParser.class);
    +
    +    private Resource morbidMapResource;
    +    private Resource mim2geneResource;
    +    private Resource hpoPhenotypeAnnotations;
    +
    +    @Override
    +    public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir) {
    +
    +        logger.info("Parsing {} resources. Writing out to: {}", resourceGroup.getName(), outDir);
    +
    +        //Check everything is present before trying to parse them
    +        if (!requiredResourcesPresent(resourceGroup)) {
    +            logger.error("Not parsing {} ResourceGroup resources as not all required resources are present.", resourceGroup.getName());
    +            return;
    +        }
    +
    +        Map> mim2geneMap = new HashMap<>();
    +        //first parseResource the mim2gene file
    +        MimToGeneParser mimParser = new MimToGeneParser(mim2geneMap);
    +        mimParser.parseResource(mim2geneResource, inDir, outDir);
    +
    +        //Need to make the cache for the morbidmap resourceParser
    +        DiseaseInheritanceCache diseaseInheritanceCache = new DiseaseInheritanceCache();
    +        diseaseInheritanceCache.parseResource(hpoPhenotypeAnnotations, inDir, outDir);
    +        if (!diseaseInheritanceCache.isEmpty()) {
    +            hpoPhenotypeAnnotations.setParseStatus(ResourceOperationStatus.SUCCESS);
    +        }
    +        //make the MimList which morbid map will populate
    +        MorbidMapParser morbidParser = new MorbidMapParser(diseaseInheritanceCache, mim2geneMap);
    +        morbidParser.parseResource(morbidMapResource, inDir, outDir);
    +    }
    +
    +    @Override
    +    public boolean requiredResourcesPresent(ResourceGroup resourceGroup) {
    +        morbidMapResource = resourceGroup.getResource(MorbidMapParser.class);
    +        if (morbidMapResource == null) {
    +            logResourceMissing(resourceGroup.getName(), MorbidMapParser.class);
    +            return false;
    +        }
    +
    +        mim2geneResource = resourceGroup.getResource(MimToGeneParser.class);
    +        if (mim2geneResource == null) {
    +            logResourceMissing(resourceGroup.getName(), MimToGeneParser.class);
    +            return false;
    +        }
    +
    +        hpoPhenotypeAnnotations = resourceGroup.getResource(DiseaseInheritanceCache.class);
    +        if (hpoPhenotypeAnnotations == null) {
    +            logResourceMissing(resourceGroup.getName(), DiseaseInheritanceCache.class);
    +            return false;
    +        }
    +
    +        return true;
    +    }
    +}
    diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/PhenoSeriesParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/PhenoSeriesParser.java
    similarity index 88%
    rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/PhenoSeriesParser.java
    rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/PhenoSeriesParser.java
    index 01cde3531..e68a8710a 100644
    --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/PhenoSeriesParser.java
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/PhenoSeriesParser.java
    @@ -1,10 +1,34 @@
    -package de.charite.compbio.exomiser.db.parsers;
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +package org.monarchinitiative.exomiser.db.parsers;
     
     /**
      * Command line functions from apache
      */
    -import de.charite.compbio.exomiser.db.resources.Resource;
    -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus;
    +
    +import org.monarchinitiative.exomiser.db.resources.Resource;
    +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus;
    +import org.slf4j.Logger;
    +import org.slf4j.LoggerFactory;
    +
     import java.io.BufferedReader;
     import java.io.BufferedWriter;
     import java.io.FileNotFoundException;
    @@ -16,8 +40,6 @@
     import java.util.HashSet;
     import java.util.Map;
     import java.util.Set;
    -import org.slf4j.Logger;
    -import org.slf4j.LoggerFactory;
     
     /**
      * This class is intended to parseResource the information about the OMIM phenotypic
    @@ -174,7 +196,7 @@ class Phenoseries {
     
             private String seriesID = null;
             private String seriesName = null;
    -        Set geneIDset = null;
    +        private Set geneIDset = null;
     
             Phenoseries(String id, String name, String entrezgene) {
                 this.geneIDset = new HashSet<>();
    diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceGroupParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceGroupParser.java
    new file mode 100644
    index 000000000..06075eb6b
    --- /dev/null
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceGroupParser.java
    @@ -0,0 +1,60 @@
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +/*
    + * To change this license header, choose License Headers in Project Properties.
    + * To change this template file, choose Tools | Templates
    + * and open the template in the editor.
    + */
    +
    +package org.monarchinitiative.exomiser.db.parsers;
    +
    +import org.monarchinitiative.exomiser.db.resources.ResourceGroup;
    +
    +import java.nio.file.Path;
    +
    +/**
    + * Interface defining the functionality for how a group of parsers should work in concert
    + * in order to produce the output file(s).
    + *
    + *
    + * @author Jules Jacobsen 
    + */
    +public interface ResourceGroupParser {
    +
    +    /**
    +     * Parses the {@code org.monarchinitiative.exomiser.resources.Resource} contained in the
    +     * {@code org.monarchinitiative.exomiser.resources.ResourceGroup} according to
    +     * the internal rules of the {@cadede.charite.compbio.exomiser.parsers.ResourceGroupParser}
    +     * implementation.
    +     *
    +     * @param resourceGroup
    +     * @param inDir
    +     * @param outDir
    +     */
    +    void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir);
    +
    +    /**
    +     * Checks that all the required resources for the ResourceGroupParser are present. 
    +     * @param resourceGroup
    +     * @return false if any resource is missing.
    +     */
    +    boolean requiredResourcesPresent(ResourceGroup resourceGroup);
    +}
    diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceParser.java
    new file mode 100644
    index 000000000..fe818b8c4
    --- /dev/null
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceParser.java
    @@ -0,0 +1,41 @@
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +/*
    + * To change this license header, choose License Headers in Project Properties.
    + * To change this template file, choose Tools | Templates
    + * and open the template in the editor.
    + */
    +
    +package org.monarchinitiative.exomiser.db.parsers;
    +
    +import org.monarchinitiative.exomiser.db.resources.Resource;
    +
    +import java.nio.file.Path;
    +
    +/**
    + *
    + * @author Jules Jacobsen 
    + */
    +public interface ResourceParser {
    +
    +    void parseResource(Resource resource, Path inDir, Path outDir);
    +
    +}
    diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceParserException.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceParserException.java
    new file mode 100644
    index 000000000..ae3219ec2
    --- /dev/null
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/ResourceParserException.java
    @@ -0,0 +1,47 @@
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +package org.monarchinitiative.exomiser.db.parsers;
    +
    +/**
    + * @author Jules Jacobsen 
    + */
    +public class ResourceParserException extends RuntimeException {
    +
    +    public ResourceParserException() {
    +        super();
    +    }
    +
    +    public ResourceParserException(String message) {
    +        super(message);
    +    }
    +
    +    public ResourceParserException(String message, Throwable cause) {
    +        super(message, cause);
    +    }
    +
    +    public ResourceParserException(Throwable cause) {
    +        super(cause);
    +    }
    +
    +    public ResourceParserException(String message, Throwable cause, boolean enableSuppression, boolean writableStackTrace) {
    +        super(message, cause, enableSuppression, writableStackTrace);
    +    }
    +}
    diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/StringParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/StringParser.java
    similarity index 81%
    rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/StringParser.java
    rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/StringParser.java
    index c26baeb3d..5c8666b95 100644
    --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/StringParser.java
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/StringParser.java
    @@ -1,19 +1,41 @@
    -package de.charite.compbio.exomiser.db.parsers;
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +package org.monarchinitiative.exomiser.db.parsers;
    +
    +import org.monarchinitiative.exomiser.db.resources.Resource;
    +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus;
    +import org.slf4j.Logger;
    +import org.slf4j.LoggerFactory;
     
    -import de.charite.compbio.exomiser.db.resources.Resource;
    -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus;
    -import java.io.*;
    +import java.io.BufferedReader;
    +import java.io.BufferedWriter;
    +import java.io.FileNotFoundException;
    +import java.io.IOException;
     import java.nio.charset.Charset;
     import java.nio.file.Files;
     import java.nio.file.Path;
    -
    -import java.util.HashMap;
     import java.util.HashSet;
     import java.util.List;
     import java.util.Map;
     import java.util.Set;
    -import org.slf4j.Logger;
    -import org.slf4j.LoggerFactory;
     
     /**
      * A class designed to parseResource in protein - protein interaction data from
    @@ -87,10 +109,7 @@ public boolean equals(Object obj) {
                 if (other.entrezGeneA == this.entrezGeneA && other.entrezGeneB == this.entrezGeneB) {
                     return true;
                 }
    -            if (other.entrezGeneB == this.entrezGeneA && other.entrezGeneA == this.entrezGeneB) {
    -                return true;
    -            }
    -            return false;
    +            return other.entrezGeneB == this.entrezGeneA && other.entrezGeneA == this.entrezGeneB;
             }
     
             @Override
    @@ -116,13 +135,13 @@ public void parseResource(Resource resource, Path inDir, Path outDir) {
     
             Path inFile = inDir.resolve(resource.getExtractedFileName());
             Path outFile = outDir.resolve(resource.getParsedFileName());
    -        
    +
             logger.info("Parsing {} file: {}. Writing out to: {}", resource.getName(), inFile, outFile);
     
             ResourceOperationStatus status;
    -        
    +
             try (BufferedReader reader = Files.newBufferedReader(inFile, Charset.defaultCharset());
    -                BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) {
    +             BufferedWriter writer = Files.newBufferedWriter(outFile, Charset.defaultCharset())) {
     
                 //there is a header line, so we'll read it here before parsin the rest
                 // the header is: 'protein1 protein2 combined_score'
    @@ -150,12 +169,15 @@ public void parseResource(Resource resource, Path inDir, Path outDir) {
                         logger.error("Malformed score: {} (could not parse field: '{}')", line, split[2]);
                         continue;
                     }
    +//                logger.info(p1+":"+p2+":"+score);
    +
                     List e1 = this.ensembl2EntrezGene.get(p1);
                     List e2 = this.ensembl2EntrezGene.get(p2);
                     if (e1 == null || e2 == null) {
                         /* cannot find entrezgene id, just skip */
                         continue;
                     }
    +//                logger.info(p1+":"+p2+":"+score);
                     if (score < 700) {
                         /* Note that STRING high-confidence scores have a score
                          of at least 0.700 (which is stored as 700 in this file). */
    diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/StringResourceGroupParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/StringResourceGroupParser.java
    new file mode 100644
    index 000000000..07cef17ed
    --- /dev/null
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/StringResourceGroupParser.java
    @@ -0,0 +1,90 @@
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +/*
    + * To change this license header, choose License Headers in Project Properties.
    + * To change this template file, choose Tools | Templates
    + * and open the template in the editor.
    + */
    +package org.monarchinitiative.exomiser.db.parsers;
    +
    +import org.monarchinitiative.exomiser.db.resources.Resource;
    +import org.monarchinitiative.exomiser.db.resources.ResourceGroup;
    +import org.slf4j.Logger;
    +import org.slf4j.LoggerFactory;
    +
    +import java.nio.file.Path;
    +import java.util.HashMap;
    +import java.util.List;
    +import java.util.Map;
    +
    +/**
    + *
    + * @author Jules Jacobsen 
    + */
    +public class StringResourceGroupParser extends AbstractResourceGroupParser implements ResourceGroupParser {
    +
    +    public static final String NAME = "STRING";
    +
    +    private static final Logger logger = LoggerFactory.getLogger(StringResourceGroupParser.class);
    +
    +    private Resource entrezResource;
    +    private Resource stringResource;
    +
    +    @Override
    +    public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir) {
    +
    +        logger.info("Parsing {} resources. Writing out to: {}", resourceGroup.getName(), outDir);
    +
    +        //Check everything is present before trying to parse them
    +        if (!requiredResourcesPresent(resourceGroup)) {
    +            logger.error("Not parsing {} ResourceGroup resources as not all required resources are present.", resourceGroup.getName());
    +            return;
    +        }
    +
    +        Map> ensembl2EntrezGene = new HashMap<>();
    +        //first parseResource the entrez gene to symbol and ensembl peptide biomart file
    +        EntrezParser entrezParser = new EntrezParser(ensembl2EntrezGene);
    +        entrezParser.parseResource(entrezResource, inDir, outDir);
    +
    +        //now parseResource the STRING DB file
    +        StringParser stringParser = new StringParser(ensembl2EntrezGene);
    +        stringParser.parseResource(stringResource, inDir, outDir);
    +
    +    }
    +
    +    @Override
    +    public boolean requiredResourcesPresent(ResourceGroup resourceGroup) {
    +
    +        entrezResource = resourceGroup.getResource(EntrezParser.class);
    +        if (entrezResource == null) {
    +            logResourceMissing(resourceGroup.getName(), EntrezParser.class);
    +            return false;
    +        }
    +
    +        stringResource = resourceGroup.getResource(StringParser.class);
    +        if (stringResource == null) {
    +            logResourceMissing(resourceGroup.getName(), StringParser.class);
    +            return false;
    +        }
    +
    +        return true;
    +    }
    +}
    diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/VCF2FrequencyParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/VCF2FrequencyParser.java
    similarity index 76%
    rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/VCF2FrequencyParser.java
    rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/VCF2FrequencyParser.java
    index 69a95057d..b978c2760 100644
    --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/VCF2FrequencyParser.java
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/VCF2FrequencyParser.java
    @@ -1,14 +1,36 @@
    -package de.charite.compbio.exomiser.db.parsers;
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +package org.monarchinitiative.exomiser.db.parsers;
     
    -import de.charite.compbio.exomiser.db.reference.Frequency;
    -import java.util.ArrayList;
    -import java.util.List;
    -import java.util.HashMap;
    -import java.util.Map;
     import de.charite.compbio.jannovar.data.ReferenceDictionary;
    +import org.monarchinitiative.exomiser.core.model.AllelePosition;
    +import org.monarchinitiative.exomiser.db.reference.Frequency;
     import org.slf4j.Logger;
     import org.slf4j.LoggerFactory;
     
    +import java.util.ArrayList;
    +import java.util.HashMap;
    +import java.util.List;
    +import java.util.Map;
    +
     /**
      * We are parsing two different VCF files for population frequency data on
      * variants, the file from ESP and the file from dbSNP. The formats of the two
    @@ -29,9 +51,7 @@ public class VCF2FrequencyParser {
     
         /** The reference dictionary to use for chromosome to name conversion */
         private final ReferenceDictionary refDict;
    -    private String ref;
    -    private String alt;
    -    private int pos;
    +
         /**
          * Initialize object with the given refDict.
          * 
    @@ -55,7 +75,6 @@ public VCF2FrequencyParser(ReferenceDictionary refDict) {
          * @return a
          * Frequency object created from the input line.
          */
    -    //TODO: might be an idea to use HTSJDK and new Jannovar like we do in the exomiser-core
         public List parseVCFline(String line, byte chromosome) {
     
             List frequencyList = new ArrayList<>();
    @@ -66,14 +85,14 @@ public List parseVCFline(String line, byte chromosome) {
             try {
                 chrom = (byte) refDict.getContigNameToID().get(fields[0]).intValue();
             } catch (NumberFormatException e) {
    -            logger.error("Unable to parse chromosome: {}. Error occured parsing line: {}", fields[0], line);
    -            logger.error("", e.getMessage());
    -            System.exit(1);
    +            String message = String.format("Unable to parse chromosome: %s. Error occured parsing line: %s", fields[0], line);
    +            logger.error(message, e.getMessage());
    +            throw new ResourceParserException(message, e);
             }
             if (chrom != chromosome){
                 return frequencyList;
             }
    -        pos = Integer.parseInt(fields[1]);
    +        int pos = Integer.parseInt(fields[1]);
             /*
              * Transform rsID to integer to save space. Note that if there are
              * problems with parse we use the constant NO_RSID = -1:
    @@ -84,8 +103,7 @@ public List parseVCFline(String line, byte chromosome) {
              * but occasionally one sees VCF files with lower case for part of the
              * sequences, e.g., to show indels.
              */
    -        ref = fields[3].toUpperCase();
    -        String info = fields[7];
    +        String ref = fields[3].toUpperCase();
     
             /*
              * dbSNP has introduced the concept of multiple minor alleles on the
    @@ -95,14 +113,15 @@ public List parseVCFline(String line, byte chromosome) {
              * also goes through this method but does not use the CAF field so
              * should be skipped
              */
    -
             String[] alts = fields[4].toUpperCase().split(",");
     
    +        String info = fields[7];
    +
             float ea = 0f;
             float aa = 0f;
             float all = 0f;
    -        List minorFreqs = new ArrayList();
    -        Map exACFreqs = new HashMap();
    +        List minorFreqs = new ArrayList<>();
    +        Map exACFreqs = new HashMap<>();
             String[] infoFields = info.split(";");
             for (String infoField : infoFields) {
                 // freq data from dbSNP file
    @@ -136,21 +155,22 @@ public List parseVCFline(String line, byte chromosome) {
             }
     
             int minorAlleleCounter = 1;
    -        for (String indAlt : alts) {
    -            this.alt = indAlt;
    -            // VCF files and Annovar-style annotations use different nomenclature for
    -            // indel variants. We use Annovar.
    -            //TODO - now that we use the new Jannovar which uses a 0-based co-ordinate system investigate is this is necessary
    -            transformVCF2AnnovarCoordinates();
    -            Frequency freq = new Frequency(chrom, pos, ref, alt, rsId);
    +        for (String alt : alts) {
    +            //2017-06-09 We're not going to use Annovar style any more. Seems Annovar recommends VCF spec now too:
    +            //http://annovar.openbioinformatics.org/en/latest/articles/VCF/
    +            //This was causing indels to be missed as the minimising ends up producing output which isn't compatible.
    +            //given we're ingesting VCF, outputting VCF and all the frequency data is coming from VCF, we'll use VCF standard.
    +            //Annotations will still come from Jannovar and these are right-shifted as opposed to left-shifted.
    +            AllelePosition minimisedAllele = AllelePosition.trim(pos, ref, alt);
    +            Frequency freq = new Frequency(chrom, minimisedAllele.getPos(), minimisedAllele.getRef(), minimisedAllele.getAlt(), rsId);
                 if (ea != 0f){   
                     freq.setESPFrequencyEA(ea);
                     freq.setESPFrequencyAA(aa);
                     freq.setESPFrequencyAll(all);
    -            }        
    -            if (minorFreqs.size() > 0) {
    +            }
    +            if (!minorFreqs.isEmpty()) {
                     if (!minorFreqs.get(minorAlleleCounter).equals(".")) {
    -                    float maf =100f *  Float.parseFloat(minorFreqs.get(minorAlleleCounter));
    +                    float maf = 100f * Float.parseFloat(minorFreqs.get(minorAlleleCounter));
                         //code here to exclude variants with no freq data
                         if (maf != 0){
                             freq.setDbSnpGmaf(maf);
    @@ -194,42 +214,6 @@ public List parseVCFline(String line, byte chromosome) {
             return frequencyList;
         }
     
    -    /**
    -     * VCF files and Annovar-style annotations use different nomenclature for
    -     * indel variants. This function transforms the {@link #ref},
    -     * {@link #alt}, and {@link #pos} fields from VCF style to Annovar style. It
    -     * should be used once for each VCF line and should be called only from the
    -     * method {@link #parseVCFline}.
    -     */
    -    private void transformVCF2AnnovarCoordinates() {
    -        if (ref.length() == 1 && alt.length() == 1) {
    -            // i.e., single nucleotide variant
    -            // In this case, no changes are needed.
    -            return;
    -        } else if (ref.length() > alt.length()) {
    -            // deletion or block substitution
    -            String head = ref.substring(0, alt.length());
    -            //For instance, if we have ref=TCG, alt=T, there is a two nt
    -            // deletion, and head is "T"
    -
    -            if (head.equals(alt)) {
    -                pos = pos + head.length(); 
    -                //this advances to position of mutation
    -                ref = ref.substring(alt.length());
    -                alt = "-";
    -            }
    -        } else if (alt.length() >= ref.length()) {
    -            //insertion or block substitution
    -            String head = alt.substring(0, ref.length());
    -             // get first L nt of ALT (where L is length of REF)
    -            if (head.equals(ref)) {
    -                pos = pos + ref.length() - 1;
    -                alt = alt.substring(ref.length());
    -                ref = "-";
    -            }
    -        }
    -    }
    -
         /**
          * @param rsId A dbSNP rsID such as rs101432848. In rare cases may be
          * multiple e.g., rs200118651;rs202059104 (then just take last id)
    diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/VariantFrequencyResourceGroupParser.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/VariantFrequencyResourceGroupParser.java
    similarity index 79%
    rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/VariantFrequencyResourceGroupParser.java
    rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/VariantFrequencyResourceGroupParser.java
    index 631e467c8..bfc4e6b57 100644
    --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/parsers/VariantFrequencyResourceGroupParser.java
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/parsers/VariantFrequencyResourceGroupParser.java
    @@ -1,18 +1,41 @@
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
     /*
      * To change this license header, choose License Headers in Project Properties.
      * To change this template file, choose Tools | Templates
      * and open the template in the editor.
      */
     
    -package de.charite.compbio.exomiser.db.parsers;
    +package org.monarchinitiative.exomiser.db.parsers;
     
    -import de.charite.compbio.exomiser.db.reference.Frequency;
    -import de.charite.compbio.exomiser.db.resources.Resource;
    -import de.charite.compbio.exomiser.db.resources.ResourceGroup;
    -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus;
     import de.charite.compbio.jannovar.data.JannovarData;
     import de.charite.compbio.jannovar.data.JannovarDataSerializer;
     import de.charite.compbio.jannovar.data.SerializationException;
    +import org.monarchinitiative.exomiser.db.reference.Frequency;
    +import org.monarchinitiative.exomiser.db.resources.Resource;
    +import org.monarchinitiative.exomiser.db.resources.ResourceGroup;
    +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus;
    +import org.slf4j.Logger;
    +import org.slf4j.LoggerFactory;
    +import org.springframework.stereotype.Component;
     
     import java.io.BufferedWriter;
     import java.io.IOException;
    @@ -21,14 +44,10 @@
     import java.nio.file.Path;
     import java.util.ArrayList;
     
    -import org.slf4j.Logger;
    -import org.slf4j.LoggerFactory;
    -import org.springframework.stereotype.Component;
    -
     /**
      * This class wraps up the parsing of the resources required for creating the variant
      * frequency data in the frequency table.
    - * 
    + *
      * @author Jules Jacobsen 
      */
     @Component
    @@ -43,7 +62,7 @@ public class VariantFrequencyResourceGroupParser extends AbstractResourceGroupPa
         Resource espResource;
         Resource jannovarResource;
         Resource exacResource;
    -    
    +
         @Override
         public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir) {
     
    @@ -55,19 +74,19 @@ public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir)
                 return;
             }
             JannovarData jannovarData = extractKnownGenesFromJannovarResource(inDir);
    -        
    +
             //doesn't matter which resource we choose the parsed file name from as they 
             //should all the the same
             Path outputFile = outDir.resolve(dbSnpResource.getParsedFileName());
    -        
    +
             try (BufferedWriter writer = Files.newBufferedWriter(outputFile, Charset.defaultCharset())) {
                 // now do one chromosome at a time and then write out results as otherwise was taking ~20G
    -            byte[] chromosomes = new byte[]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24};    
    +            byte[] chromosomes = new byte[]{1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24};
                 for (byte chromosome : chromosomes) {
                     /*
                      * First parseResource the dnSNP data.
                      */
    -                logger.info("Parsing dbSNP data");
    +                logger.info("Parsing chromosome {} dbSNP data", chromosome);
                     //this is the Frequency List we're going to populate and the write out to file
                     ArrayList frequencyList = new ArrayList<>();
                     //provide it to the DbSnpFrequencyParser along with the UCSC data
    @@ -81,15 +100,15 @@ public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir)
                     // Now parseResource the ExAC data using the frequency information generated
                     // from the dbSNP and UCSC known gene data.
                     ExACFrequencyParser exacParser = new ExACFrequencyParser(jannovarData.getRefDict(), frequencyList, chromosome);
    -                logger.info("Parsing the ExAC data");
    +                logger.info("Parsing chromosome {} ExAC data", chromosome);
                     exacParser.parseResource(exacResource, inDir, outDir);
     
                     // Now parseResource the ESP data using the frequency information generated
                     // from the dbSNP and UCSC known gene data.
                     EspFrequencyParser espParser = new EspFrequencyParser(jannovarData.getRefDict(), frequencyList, chromosome);
    -                logger.info("Parsing the ESP data");
    +                logger.info("Parsing chromosome {} ESP data", chromosome);
                     espParser.parseResource(espResource, inDir, outDir);
    -                
    +
                     for (Frequency f : frequencyList) {
                         writer.write(f.getDumpLine());
                     }
    @@ -116,32 +135,32 @@ private JannovarData extractKnownGenesFromJannovarResource(Path inDir) throws Ru
     
         @Override
         public boolean requiredResourcesPresent(ResourceGroup resourceGroup) {
    -        
    +
             dbSnpResource = resourceGroup.getResource(DbSnpFrequencyParser.class);
             if (dbSnpResource == null) {
                 logResourceMissing(resourceGroup.getName(), DbSnpFrequencyParser.class);
                 return false;
             }
    -        
    +
             exacResource = resourceGroup.getResource(ExACFrequencyParser.class);
             if (exacResource == null) {
                 logResourceMissing(resourceGroup.getName(), ExACFrequencyParser.class);
                 return false;
             }
    -        
    +
             espResource = resourceGroup.getResource(EspFrequencyParser.class);
             if (espResource == null) {
                 logResourceMissing(resourceGroup.getName(), EspFrequencyParser.class);
                 return false;
             }
    -        
    +
             jannovarResource = resourceGroup.getResource("UCSC_HG19");
             if (jannovarResource == null) {
                 logger.error("MISSING RESOURCE for {} data required by {} - check this is defined in resource configuration class", NAME, "UCSC_HG19");
                 return false;
             }
    -        
    -        return true; 
    +
    +        return true;
         }
    -    
    +
     }
    diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/reference/Frequency.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/reference/Frequency.java
    new file mode 100644
    index 000000000..cf25ef7cb
    --- /dev/null
    +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/reference/Frequency.java
    @@ -0,0 +1,373 @@
    +/*
    + * The Exomiser - A tool to annotate and prioritize genomic variants
    + *
    + * Copyright (c) 2016-2017 Queen Mary University of London.
    + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd.
    + *
    + * This program is free software: you can redistribute it and/or modify
    + * it under the terms of the GNU Affero General Public License as
    + * published by the Free Software Foundation, either version 3 of the
    + * License, or (at your option) any later version.
    + *
    + * This program is distributed in the hope that it will be useful,
    + * but WITHOUT ANY WARRANTY; without even the implied warranty of
    + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    + * GNU Affero General Public License for more details.
    + *
    + * You should have received a copy of the GNU Affero General Public License
    + * along with this program.  If not, see .
    + */
    +
    +package org.monarchinitiative.exomiser.db.reference;
    +
    +import java.util.Objects;
    +
    +/**
    + * This class is meant to be used for parsing dbSNP data and ESP data to get
    + * information about the population frequency of variants. Objects of this class
    + * will be created by the parsers {@link exomizer.io.dbSNP2FrequencyParser dbSNP2FrequencyParser}
    + * as well as {@link exomizer.io.ESP2FrequencyParser ESP2FrequencyParser} during
    + * parsing, and matching variants will be combined. Finally, objects of this
    + * class know how to write themselves as a line of the postgres Dump File. 

    + * The frequencies (from dbSNP and ESP) are both stored as percentages. Note + * that the files downloaded from ESP expressed the MAF (minor allele frequency) + * as a percentage, whereas the files from dbSNP use a proportion. The code in + * {@link exomizer.io.dbSNP2FrequencyParser dbSNP2FrequencyParser} therefore + * converts the data in dbSNP to percentages for uniformity's sake.

    Note + * that this class implements {@code Comparable} because it is intended to be + * used as an element of a {@code TreeSet} in the class + * {@link exomizer.io.dbSNP2FrequencyParser dbSNP2FrequencyParser} in order to + * sort and search these objects while creating a dump file for postgreSQL. + * + * @author Peter Robinson + * @version 0.08 (29 June, 2013) + */ +public class Frequency implements Comparable { + + /** + * Byte representation of the chromosome + */ + private final byte chromosome; + /** + * Start position of the variant on the chromosome + */ + private final int pos; + /** + * Sequence (one or more nucleotides) of the reference + */ + private final String ref; + /** + * Sequence (one or more nucleotides) of the alt (variant) sequence + */ + private final String alt; + /** + * Integer representation of the rsId + */ + private int rsId; + /** + * Float representation of dbSNP minor allele frequency (from 1000G phase I + * via dbSNP), expressed as a percentage + */ + private float dbSNPmaf; + /** + * Float representation of the ESP minor allele frequency for European + * Americans, expressed as a percentage * + */ + private float espEA; + /** + * Float representation of the ESP minor allele frequency for African + * Americans, expressed as a percentage * + */ + private float espAA; + /** + * Float representation of the ESP minor allele frequency for all comers, + * expressed as a percentage * + */ + private float espAll; + private float exACAfr; + private float exACAmr; + private float exACEas; + private float exACFin; + private float exACNfe; + private float exACOth; + private float exACSas; + + public Frequency(byte chromosome, int position, String ref, String alt, int rsId) { + this.chromosome = chromosome; + this.pos = position; + this.ref = ref; + this.alt = alt; + this.rsId = rsId; + } + + public byte getChromosome() { + return chromosome; + } + + public int getPos() { + return pos; + } + + public String getRef() { + return ref; + } + + public String getAlt() { + return alt; + } + + public int getRsId() { + return rsId; + } + + public float getESPFrequencyAA() { + return espAA; + } + + public float getESPFrequencyEA() { + return espEA; + } + + public float getESPFrequencyAll() { + return espAll; + } + + public float getExACFrequencyAfr() { + return exACAfr; + } + + public float getExACFrequencyAmr() { + return exACAmr; + } + + public float getExACFrequencyEas() { + return exACEas; + } + + public float getExACFrequencyFin() { + return exACFin; + } + + public float getExACFrequencyNfe() { + return exACNfe; + } + + public float getExACFrequencyOth() { + return exACOth; + } + + public float getExACFrequencySas() { + return exACSas; + } + + + public void setRsId(int rsId) { + this.rsId = rsId; + } + + /** + * Sets the frequency (expressed as percent) in dbSNP data of the current + * variant. Note that client code is expected to transform propoprtions, + * i.e. value \in [0,1] into percentages, i.e., value \in [0,100] before + * calling this method. + * + * @param maf The minor allele frequency, expressed as a percentage. + */ + public void setDbSnpGmaf(float maf) { + this.dbSNPmaf = maf; + } + + /** + * Sets the frequency (expressed as percent) in the ESP data of the current + * variant. Note that the ESP MAF is expressed in percentage in the original + * files, and thus, the parameter is a value \in [0,100] + * + * @param f The minor allele frequency of this variant as found in the ESP + * data. + */ + public void setESPFrequencyEA(float f) { + this.espEA = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ESP + * data. + */ + public void setESPFrequencyAA(float f) { + this.espAA = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ESP + * data. + */ + public void setESPFrequencyAll(float f) { + this.espAll = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ExAC + * data. + */ + public void setExACFrequencyAfr(float f) { + this.exACAfr = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ExAC + * data. + */ + public void setExACFrequencyAmr(float f) { + this.exACAmr = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ExAC + * data. + */ + public void setExACFrequencyEas(float f) { + this.exACEas = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ExAC + * data. + */ + public void setExACFrequencyFin(float f) { + this.exACFin = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ExAC + * data. + */ + public void setExACFrequencyNfe(float f) { + this.exACNfe = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ExAC + * data. + */ + public void setExACFrequencyOth(float f) { + this.exACOth = f; + } + + /** + * @param f The minor allele frequency of this variant as found in the ExAC + * data. + */ + public void setExACFrequencySas(float f) { + this.exACSas = f; + } + + /** + * This frequency object has four frequency estimations, + * {@link #dbSNPmaf}, {@link #espEA}, {@link #espAA}, and {@link #espAll}. + * This method returns the maximum frequency amongst these four values. + */ + public float getMaximumFrequency() { + return Math.max(Math.max(this.dbSNPmaf, this.espAll), Math.max(this.espEA, this.espAA)); + } + + /** + * This method is used to create a single line of the file we will import + * into the postgreSQL database (table: frequency). The structure of the + * line is

    chromosome | position | ref | alt | rsid | dbSNPmaf | + * ESPmafEA | ESPmafAA | ESPmafAll;

    Note that the rsId is printed as an + * integer and that client code will need to add the "rs" and transform it + * into a String. + */ + public String getDumpLine() { + return String.format("%d|%d|%s|%s|%d|%f|%f|%f|%f|%f|%f|%f|%f|%f|%f|%f%n", this.chromosome, this.pos, this.ref, this.alt, this.rsId, this.dbSNPmaf, this.espEA, + this.espAA, this.espAll, this.exACAfr, this.exACAmr, this.exACEas, this.exACFin, this.exACNfe, this.exACOth, this.exACSas); + } + + /** + * This method is implemented for the {@code Comparable} interface. We sort + * frequency objects based on

    1. Chromosome
    2. Position
    3. Reference + * sequence
    4. Alt sequence
    + */ + @Override + public int compareTo(Frequency f) { + if (this.chromosome != f.chromosome) { + return (this.chromosome - f.chromosome); + } + if (this.pos != f.pos) { + return (this.pos - f.pos); + } + if (!this.ref.equals(f.ref)) { + return this.ref.compareTo(f.ref); + } + return this.alt.compareTo(f.alt); + } + + @Override + public int hashCode() { + int hash = 7; + hash = 37 * hash + this.chromosome; + hash = 37 * hash + this.pos; + hash = 37 * hash + Objects.hashCode(this.ref); + hash = 37 * hash + Objects.hashCode(this.alt); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final Frequency other = (Frequency) obj; + if (this.chromosome != other.chromosome) { + return false; + } + if (this.pos != other.pos) { + return false; + } + if (!Objects.equals(this.ref, other.ref)) { + return false; + } + return Objects.equals(this.alt, other.alt); + } + + /** + * This method checks of the frequency object other ias located at the same + * position as the current object. The method is intended to help avoid + * putting duplicate entries into the database. + */ + public boolean isIdenticalSNP(Frequency other) { + if (this.chromosome != other.chromosome) { + return false; + } + if (this.pos != other.pos) { + return false; + } + if (!this.ref.equals(other.ref)) { + return false; + } + return this.alt.equals(other.alt); + } + + /** + * In a few cases, dbSNP contains multiple entries for some given SNP. This + * method is used to reset an entry to the values of some other entry in + * these cases (see the method checkVariantForExomalLocationAndOutput from + * the class dbSNP2FrequencyParser). + */ + public void resetFrequencyValues(Frequency other) { + this.dbSNPmaf = other.dbSNPmaf; + this.espEA = other.espEA; + this.espAA = other.espAA; + this.espAll = other.espAll; + this.rsId = other.rsId; + + } + + @Override + public String toString() { + return "Frequency{" + "chromosome=" + chromosome + ", pos=" + pos + ", ref=" + ref + ", alt=" + alt + ", rsID=" + rsId + ", dbSNPmaf=" + dbSNPmaf + ", espEA=" + espEA + ", espAA=" + espAA + ", espAll=" + espAll + '}'; + } +} \ No newline at end of file diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/reference/VariantPathogenicity.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/reference/VariantPathogenicity.java new file mode 100644 index 000000000..395d9cc75 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/reference/VariantPathogenicity.java @@ -0,0 +1,102 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.db.reference; + +/** + * Class representing the chrom/ref/position/alt and calculated pathogenicity + * scores. + * + * @author Jules Jacobsen + */ +public class VariantPathogenicity { + + //TODO: this class needs refactoring to split out the variant coordinates + //from the pathogenicity scores. + private final int chromosome; + private final int position; + private final String ref; + private final String alt; + + private final Float siftScore; + private final Float polyphenScore; + private final Float muttasterScore; + private final Float caddRawRankScore; + private final Float caddRawScore; + + /** + * This class encapsulates the information in a single dbNSFP line. In some + * cases, there are multiple lines for the same chromosomal position. We + * choose the line that is predicted to be most pathogenic by using the + * function {@link #maxPathogenicity maxPathogenicity()} of this class. The + * function {@link #toDumpLine toDumpLine()} can then be called to get the + * corresponding SQL dump line. + * + * @param chromosome An integer representation of the chromosome (23:X, + * 24:Y, 25:M) + * @param position Position of the variant on the chromosome + * @param ref reference nucleotide + * @param alt variant (alternate) nucleotide + * @param siftScore SIFT score for the variant + * @param polyphen2HVAR Polyphen2 score for the variant + * @param muttasterScore Mutation Taster score for the variant + * @param phyloP phyloP conservation score for the variant + * @param caddRawRankScore + * @param caddRawScore + */ + public VariantPathogenicity(int chromosome, int position, String ref, String alt, + Float siftScore, Float polyphen2HVAR, Float muttasterScore, + Float caddRawRankScore, Float caddRawScore) { + this.chromosome = chromosome; + this.position = position; + this.ref = ref; + this.alt = alt; + this.siftScore = siftScore; + this.polyphenScore = polyphen2HVAR; + this.muttasterScore = muttasterScore; + this.caddRawRankScore = caddRawRankScore; + this.caddRawScore = caddRawScore; + } + + /** + * This returns a line that will form part of the import file for + * postgreSQL. + * + * @return + */ + public String toDumpLine() { + return String.format("%s|%s|%s|%s|%s|%s|%s|%s|%s%n", + chromosome, position, ref, alt, + siftScore, polyphenScore, muttasterScore, caddRawRankScore, caddRawScore); + } + + @Override + public String toString() { + return "VariantPathogenicity{" + "chromosome=" + chromosome + + ", position=" + position + ", ref=" + ref + ", alt=" + alt + + ", sift=" + siftScore + ", polyphen=" + polyphenScore + + ", muttaster=" + muttasterScore + ", caddRawRank=" + caddRawRankScore + ", caddRaw=" + caddRawScore + '}'; + } +} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/Resource.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/Resource.java similarity index 82% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/Resource.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/Resource.java index 991816de5..efe11a3d5 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/Resource.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/Resource.java @@ -1,12 +1,33 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.resources; +package org.monarchinitiative.exomiser.db.resources; + +import org.monarchinitiative.exomiser.db.parsers.ResourceGroupParser; +import org.monarchinitiative.exomiser.db.parsers.ResourceParser; -import de.charite.compbio.exomiser.db.parsers.ResourceGroupParser; -import de.charite.compbio.exomiser.db.parsers.ResourceParser; import java.util.Objects; /** @@ -17,11 +38,11 @@ * locally. How it should be downloaded and extracted, which class is required to * parse the resource and whether this is also required by other resources in * order to parse them as part of a - * {@code de.charite.compbio.exomiser.resources.ResourceGroup}. - * + * {@code org.monarchinitiative.exomiser.resources.ResourceGroup}. + * * It also tracks the download, extract and parse steps as - * {@code de.charite.compbio.exomiser.resources.ResourceOperationStatus}s - * + * {@code org.monarchinitiative.exomiser.resources.ResourceOperationStatus}s + * * @author Jules Jacobsen */ public class Resource { @@ -36,20 +57,20 @@ public class Resource { private String parsedFileName; private String resourceGroupName; private Class resourceGroupParserClass; - + private ResourceOperationStatus downloadStatus; private ResourceOperationStatus extractStatus; private ResourceOperationStatus parseStatus; - + public Resource(String name) { this.name = name; downloadStatus = ResourceOperationStatus.UNTRIED; extractStatus = ResourceOperationStatus.UNTRIED; parseStatus = ResourceOperationStatus.UNTRIED; } - - + + public String getName() { return name; } @@ -194,16 +215,13 @@ public boolean equals(Object obj) { if (!Objects.equals(this.parserClass, other.parserClass)) { return false; } - if (!Objects.equals(this.parsedFileName, other.parsedFileName)) { - return false; - } - return true; + return Objects.equals(this.parsedFileName, other.parsedFileName); } - + public String getStatus() { return String.format("Status for: %-23s Download: %s, Extract: %s, Parse: %s", name, downloadStatus, extractStatus, parseStatus); } - + @Override public String toString() { return "Resource{" + "name=" + name + ", url=" + url + ", fileName=" + remoteFileName + ", version=" + version + ", parser=" + parserClass + ", parsedFileName=" + parsedFileName + ", resourceGroupName=" + resourceGroupName +'}'; diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceDownloadHandler.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceDownloadHandler.java new file mode 100644 index 000000000..0d3ef84b4 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceDownloadHandler.java @@ -0,0 +1,89 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.db.resources; + +import org.monarchinitiative.exomiser.db.io.FileDownloadUtils; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.net.MalformedURLException; +import java.net.URL; +import java.nio.file.Path; +import java.time.Instant; + +/** + * Handles the business of downloading a set of ExternalResources + * + * @author Jules Jacobsen + */ +public class ResourceDownloadHandler { + + private static final Logger logger = LoggerFactory.getLogger(ResourceDownloadHandler.class); + + public static void downloadResources(Iterable externalResources, Path downloadPath) { + + int numResources = 0; + for (Resource resource : externalResources) { + numResources++; + downloadResource(resource, downloadPath); + } + + logger.info("Transferred {} file(s) with the following statuses:", numResources); + for (Resource resource : externalResources) { + logger.info("{}", resource.getStatus()); + } + + } + + public static void downloadResource(Resource externalResource, Path downloadDir) { + + ResourceOperationStatus status; + if (externalResource.getUrl() == null || externalResource.getUrl().isEmpty()) { + logger.info("Resource {} has no URL set - skipping resource.", externalResource.getName()); + return; + } + try { + + URL resourceUrl = new URL(externalResource.getUrl() + externalResource.getRemoteFileName()); + logger.info("Resource: {}: Getting {} from {}", externalResource.getName(), externalResource.getRemoteFileName(), resourceUrl); + Path downloadPath = downloadDir.resolve(externalResource.getRemoteFileName()); + status = FileDownloadUtils.fetchFile(resourceUrl, downloadPath.toFile()); + externalResource.setDownloadStatus(status); + //if there is no version info for the resource, set a timestamp + if (externalResource.getVersion() == null || externalResource.getVersion().isEmpty()) { + externalResource.setVersion(Instant.now().toString()); + } + + } catch (MalformedURLException ex) { + status = ResourceOperationStatus.FAILURE; + logger.error(null, ex); + } + externalResource.setDownloadStatus(status); + + logger.info("{}", externalResource.getStatus()); + + } +} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceExtractionHandler.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceExtractionHandler.java similarity index 81% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceExtractionHandler.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceExtractionHandler.java index a9674a29b..12c4b5804 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceExtractionHandler.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceExtractionHandler.java @@ -1,29 +1,42 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.resources; +package org.monarchinitiative.exomiser.db.resources; -import java.io.File; -import java.io.FileInputStream; +import org.apache.commons.io.IOUtils; +import org.apache.commons.vfs2.*; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.*; import java.io.FileNotFoundException; -import java.io.FileOutputStream; -import java.io.IOException; -import java.io.OutputStream; import java.net.URI; import java.nio.file.Files; import java.nio.file.Path; import java.nio.file.StandardCopyOption; import java.util.zip.GZIPInputStream; -import org.apache.commons.io.IOUtils; -import org.apache.commons.vfs2.AllFileSelector; -import org.apache.commons.vfs2.FileObject; -import org.apache.commons.vfs2.FileSystemException; -import org.apache.commons.vfs2.FileSystemManager; -import org.apache.commons.vfs2.VFS; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; /** * Handles the extraction of files from their downloaded state to an @@ -49,14 +62,14 @@ public static void extractResource(Resource externalResource, Path inDir, Path o externalResource.setExtractStatus(ResourceOperationStatus.SUCCESS); return; } - + //make sure the output path exists outDir.toFile().mkdir(); - + //expected types: .tar.gz, .gz, .zip, anything else File inFile = inDir.resolve(externalResource.getRemoteFileName()).toFile(); File outFile = outDir.resolve(externalResource.getExtractedFileName()).toFile(); - + ResourceOperationStatus status; String scheme = externalResource.getExtractionScheme(); logger.info("Using resource extractionScheme: {}", scheme); @@ -71,7 +84,7 @@ public static void extractResource(Resource externalResource, Path inDir, Path o status = extractArchive(inFile, outFile); break; case "copy": - status = copyFile(inFile, outFile); + status = copyFile(inFile, outFile); break; case "none": status = ResourceOperationStatus.SUCCESS; @@ -83,24 +96,24 @@ public static void extractResource(Resource externalResource, Path inDir, Path o externalResource.setExtractStatus(status); logger.info("{}", externalResource.getStatus()); } - + private static ResourceOperationStatus gunZipFile(File inFile, File outFile) { logger.info("Unzipping file: {} to {}", inFile, outFile); - + try (FileInputStream fileInputStream = new FileInputStream(inFile); - GZIPInputStream gZIPInputStream = new GZIPInputStream(fileInputStream); - OutputStream out = new FileOutputStream(outFile); - ) { + GZIPInputStream gZIPInputStream = new GZIPInputStream(fileInputStream); + OutputStream out = new FileOutputStream(outFile) + ) { //good for under 2GB otherwise IOUtils.copyLarge is needed IOUtils.copy(gZIPInputStream, out); - + return ResourceOperationStatus.SUCCESS; } catch (FileNotFoundException ex) { logger.error(null, ex); return ResourceOperationStatus.FILE_NOT_FOUND; } catch (IOException ex) { - logger.error(null, ex); + logger.error(null, ex); } return ResourceOperationStatus.FAILURE; } @@ -109,10 +122,10 @@ private static ResourceOperationStatus gunZipFile(File inFile, File outFile) { * Will extract a .zip or .tar archive to the specified outFile location * @param inFile * @param outPath - * @return + * @return */ private static ResourceOperationStatus extractArchive(File inFile, File outFile) { - + try { URI inFileUri = inFile.toURI(); logger.info("Extracting archive: {}", inFileUri); @@ -139,20 +152,20 @@ private static ResourceOperationStatus extractArchive(File inFile, File outFile) private static ResourceOperationStatus extractTgzArchive(File inFile, File outFile) { logger.info("Extracting tar.gz file: {} to {}", inFile, outFile); File intermediateTarArchive = new File(outFile.getParentFile(), outFile.getName() + ".tar"); - + //first unzip the file gunZipFile(inFile, intermediateTarArchive); //then extract the archive files - ResourceOperationStatus returnStatus = extractArchive(intermediateTarArchive, outFile); + ResourceOperationStatus returnStatus = extractArchive(intermediateTarArchive, outFile); //finally clean-up the intermediate file intermediateTarArchive.delete(); return returnStatus; } - + private static ResourceOperationStatus copyFile(File inFile, File outFile) { logger.info("Copying file {} to {}", inFile, outFile); - + try { Files.copy(inFile.toPath(), outFile.toPath(), StandardCopyOption.REPLACE_EXISTING); //update the last modified time to now so that it's easy to see when the file was diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceGroup.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceGroup.java new file mode 100644 index 000000000..d51d55009 --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceGroup.java @@ -0,0 +1,145 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.db.resources; + +import org.monarchinitiative.exomiser.db.parsers.ResourceGroupParser; +import org.monarchinitiative.exomiser.db.parsers.ResourceParser; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.util.LinkedHashMap; +import java.util.Map; + +/** + * This class represents a bundle of resources which need to be parsed as a + * group due to inter-dependencies of the resources. + * + *

    + * For example the OMIM resources mordbidmap and mim2gene have related + * information which needs to be drawn together in order to produce the final + * dump file for the omim table. The + * {@code org.monarchinitiative.exomiser.resources.ResourceGroup} provides a means + * of grouping these together so that they can be parsed in the correct order by + * a {@code org.monarchinitiative.exomiser.parsers.ResourceGroupParser}. + * + * @see ResourceGroupParser + * + * @author Jules Jacobsen + */ +public class ResourceGroup { + + private static final Logger logger = LoggerFactory.getLogger(ResourceGroup.class); + private final String groupName; + private final Class resourceGroupParserClass; + private final Map, Resource> resourcesClassMap; + private final Map resourcesNameMap; + + public ResourceGroup(String groupName, Class resourceGroupParserClass) { + this.groupName = groupName; + this.resourceGroupParserClass = resourceGroupParserClass; + this.resourcesClassMap = new LinkedHashMap<>(); + this.resourcesNameMap = new LinkedHashMap<>(); + } + + public String getName() { + return groupName; + } + + public Class getParserClass() { + return resourceGroupParserClass; + } + + public boolean addResource(Resource resource) { + + if (resource.getParserClass() == null) { + resourcesNameMap.put(resource.getName(), resource); + return true; + } else { + //this will work for all resources apart from the ucsc_hg19.ser which is + //used as a cache by other parsers + + Class resourceParserClass = resource.getParserClass(); + if (resourceParserClass != null) { + resourcesClassMap.put(resourceParserClass, resource); + //we need to add the resource to the name map in all cases as the + //resource could be requested by name as well as my class + resourcesNameMap.put(resource.getName(), resource); + return true; + } + } + return false; + } + + /** + * Returns the {@code org.monarchinitiative.exomiser.resources.Resource} which + * is parsed by the specified + * {@code org.monarchinitiative.exomiser.parsers.ResourceParser} class or a + * null. + * + *

    + * This is the preferred method for getting a resource from the + * ResourceGroup as opposed to the getResource(String resourceName). + * Although there is a potential for configuring things incorrectly to start + * with, there is better type-safety using the full class groupName of the + * {@code org.monarchinitiative.exomiser.parsers.ResourceParser} + * + * @param clazz the class of the + * {@code org.monarchinitiative.exomiser.parsers.ResourceParser} used to parse + * a {@code org.monarchinitiative.exomiser.resources.Resource} + * @return The matching + * {@code org.monarchinitiative.exomiser.resources.Resource} or null if no + * match is found. + */ + public Resource getResource(Class clazz) { + return resourcesClassMap.get(clazz); + } + + /** + * Returns the {@code org.monarchinitiative.exomiser.resources.Resource} with + * the same groupName as the provided resourceName or a null. + * + *

    + * Only use this method when there is no ResourceParserClass available for + * the resource as this method essentially relies on hard-coded names for + * resources. In preference to this define a ResourceParserClass and use the + * getResource(Class clazz) method. + * + * + * @param resourceName the groupName of the required + * {@code org.monarchinitiative.exomiser.resources.Resource} + * @return The matching + * {@code org.monarchinitiative.exomiser.resources.Resource} or null if no + * match is found. + */ + public Resource getResource(String resourceName) { + return resourcesNameMap.get(resourceName); + } + + @Override + public String toString() { + return "ResourceGroup{" + "groupName=" + groupName + ", resourceGroupParserClass=" + resourceGroupParserClass + ", resources=" + resourcesClassMap.values() + '}'; + } +} diff --git a/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceOperationStatus.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceOperationStatus.java new file mode 100644 index 000000000..1223f280e --- /dev/null +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceOperationStatus.java @@ -0,0 +1,36 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.resources; + +/** + * Constants for describing the status of a file operation. + * + * @author Jule Jacobsen + */ +public enum ResourceOperationStatus { + FAILURE, SUCCESS, UNTRIED, FILE_NOT_FOUND, PARSER_NOT_FOUND +} diff --git a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceParserHandler.java b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceParserHandler.java similarity index 84% rename from exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceParserHandler.java rename to exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceParserHandler.java index 337a7db88..3a8317513 100644 --- a/exomiser-db/src/main/java/de/charite/compbio/exomiser/db/resources/ResourceParserHandler.java +++ b/exomiser-db/src/main/java/org/monarchinitiative/exomiser/db/resources/ResourceParserHandler.java @@ -1,18 +1,39 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.resources; +package org.monarchinitiative.exomiser.db.resources; + +import org.monarchinitiative.exomiser.db.parsers.MetaDataParser; +import org.monarchinitiative.exomiser.db.parsers.ResourceGroupParser; +import org.monarchinitiative.exomiser.db.parsers.ResourceParser; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; -import de.charite.compbio.exomiser.db.parsers.MetaDataParser; -import de.charite.compbio.exomiser.db.parsers.ResourceGroupParser; -import de.charite.compbio.exomiser.db.parsers.ResourceParser; import java.nio.file.Path; import java.util.HashMap; import java.util.Map; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; /** * Handles parsing of classes from the resource objects. @@ -32,7 +53,7 @@ public static void parseResources(Iterable externalResources, Path inD Map resourceGroupMap = new HashMap<>(); //...and the MetaData 'file' this is really a special case Resource metaDataResource = null; - + logger.info("Parsing resources:"); for (Resource resource : externalResources) { //we're using the resourseGroupParserClass as the key here as this is less likely to @@ -60,7 +81,7 @@ public static void parseResources(Iterable externalResources, Path inD } } } - + //parse the ResourceGroups logger.info("Parsing resourceGroups:"); for (ResourceGroup resourceGroup : resourceGroupMap.values()) { @@ -71,7 +92,7 @@ public static void parseResources(Iterable externalResources, Path inD if (metaDataResource != null) { parseMetaData(metaDataResource, externalResources, outDir); } - + //and we're done! logger.info("Done parsing."); } @@ -110,7 +131,7 @@ public static void parseResourceGroup(ResourceGroup resourceGroup, Path inDir, P logger.error("Error parsing resource {}", resourceGroup.getName(), ex); } } - + /** * Parses out the file version info from the supplied ExternalResources and * dumps them out to a dump file. @@ -121,10 +142,10 @@ public static void parseResourceGroup(ResourceGroup resourceGroup, Path inDir, P private static void parseMetaData(Resource metaDataResource, Iterable externalResources, Path outPath) { logger.info("Handling resource: {}", metaDataResource.getName()); - + ResourceParser metaDataParser = new MetaDataParser(metaDataResource, externalResources); metaDataParser.parseResource(metaDataResource, null, outPath); logger.info("{} {}", metaDataResource.getStatus(), metaDataParser.getClass().getCanonicalName()); - + } } diff --git a/exomiser-db/src/main/resources/app.properties b/exomiser-db/src/main/resources/app.properties index 745298907..3e135f46b 100644 --- a/exomiser-db/src/main/resources/app.properties +++ b/exomiser-db/src/main/resources/app.properties @@ -14,4 +14,4 @@ parseResources=false dumpPhenoDigmData=false #boolean for doing Flyway database migrations migratePostgres=false -migrateH2=true +migrateH2=false diff --git a/exomiser-db/src/main/resources/application.properties b/exomiser-db/src/main/resources/application.properties new file mode 100644 index 000000000..1c3ff60c5 --- /dev/null +++ b/exomiser-db/src/main/resources/application.properties @@ -0,0 +1,4 @@ +exomiser.h2.url=jdbc:h2:file:C:/Documents/GitHub/Exomiser/exomiser-db/target/exomiser;MODE=PostgreSQL; +flyway.locations=classpath:db/migration/common,classpath:db/migration/h2 +flyway.enabled=false +spring.h2.console.enabled=true \ No newline at end of file diff --git a/exomiser-db/src/main/resources/banner.txt b/exomiser-db/src/main/resources/banner.txt new file mode 100644 index 000000000..ba67c7d09 --- /dev/null +++ b/exomiser-db/src/main/resources/banner.txt @@ -0,0 +1,7 @@ + _____ _ _____ _ + |_ _| |__ ___ | ____|_ _____ _ __ ___ (_)___ ___ _ __ + | | | '_ \ / _ \ | _| \ \/ / _ \| '_ ` _ \| / __|/ _ \ '__| + | | | | | | __/ | |___ > < (_) | | | | | | \__ \ __/ | + |_| |_| |_|\___| |_____/_/\_\___/|_| |_| |_|_|___/\___|_| + + === Database Build === v${project.version} diff --git a/exomiser-db/src/main/resources/db/migration/common/V1.0__Create_exomiser_schema.sql b/exomiser-db/src/main/resources/db/migration/common/V1.0__Create_exomiser_schema.sql index ce0c95329..44b5ba787 100644 --- a/exomiser-db/src/main/resources/db/migration/common/V1.0__Create_exomiser_schema.sql +++ b/exomiser-db/src/main/resources/db/migration/common/V1.0__Create_exomiser_schema.sql @@ -227,7 +227,7 @@ CREATE TABLE disease ( diseasename character varying(2056), gene_id integer NOT NULL, type character(1), - inheritance CHAR + inheritance character(2) ); @@ -416,10 +416,10 @@ CREATE INDEX entrez_id_2 ON human2fish_orthologs (entrez_id); CREATE INDEX mgi_gene_id ON human2mouse_orthologs (mgi_gene_id); -CREATE INDEX e2 ON regulatory_features (chromosome, start, "end"); -CREATE INDEX e5 ON regulatory_features (chromosome); -CREATE INDEX e6 ON regulatory_features (start); -CREATE INDEX e7 ON regulatory_features ("end"); +-- CREATE INDEX e2 ON regulatory_features (chromosome, start, "end"); +-- CREATE INDEX e5 ON regulatory_features (chromosome); +-- CREATE INDEX e6 ON regulatory_features (start); +-- CREATE INDEX e7 ON regulatory_features ("end"); create index tad1 on tad (chromosome,start,"end"); diff --git a/exomiser-db/src/main/resources/jdbc.properties b/exomiser-db/src/main/resources/jdbc.properties index 6009079a0..77a4e90f9 100644 --- a/exomiser-db/src/main/resources/jdbc.properties +++ b/exomiser-db/src/main/resources/jdbc.properties @@ -1,3 +1,22 @@ +# +# The Exomiser - A tool to annotate and prioritize variants +# +# Copyright (C) 2012 - 2016 Charite Universit�tsmedizin Berlin and Genome Research Ltd. +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see . +# + #Exomiser connection properties exomiser.h2.driverClassName=org.h2.Driver exomiser.h2.url=jdbc:h2:file:data/exomiser;MODE=PostgreSQL; @@ -12,6 +31,6 @@ exomiser.postgres.password=vcfanalysis #Phenodigm connection properties phenodigm.driverClassName=com.mysql.jdbc.Driver -phenodigm.url=jdbc:mysql://web-mei-phct:3368/phenodigm_jun2015?autoReconnect=true +phenodigm.url=jdbc:mysql://127.0.01:3368/phenodigm_apr2017?autoReconnect=true phenodigm.username=ds5 -phenodigm.password=fuzzybump234 \ No newline at end of file +phenodigm.password=hermione234 diff --git a/exomiser-db/src/main/resources/logback.groovy b/exomiser-db/src/main/resources/logback.groovy index e4f867a0f..b3af958f3 100644 --- a/exomiser-db/src/main/resources/logback.groovy +++ b/exomiser-db/src/main/resources/logback.groovy @@ -13,7 +13,7 @@ appender("CONSOLE", ConsoleAppender) { } } -logger("de.charite.compbio.exomiser", INFO) +logger("org.monarchinitiative.exomiser", INFO) logger("org.thymeleaf", ERROR) root(INFO, ["CONSOLE", "FILE"]) \ No newline at end of file diff --git a/exomiser-db/src/main/resources/resource.properties b/exomiser-db/src/main/resources/resource.properties index 0818bf685..cec63d2fd 100644 --- a/exomiser-db/src/main/resources/resource.properties +++ b/exomiser-db/src/main/resources/resource.properties @@ -2,9 +2,17 @@ # To change this template file, choose Tools | Templates # and open the template in the editor. +# HGNC +hgnc.url=ftp://ftp.ebi.ac.uk/pub/databases/genenames/new/tsv/ +hgnc.remoteFile=hgnc_complete_set.txt +hgnc.version= +hgnc.extractedName=hgnc_complete_set.txt +hgnc.extractScheme=copy +hgnc.parsedName= + # HPO # change to purl.obolibrary.org/obo/hp.obo ? -hpo.url=http://compbio.charite.de/hudson/job/hpo/lastStableBuild/artifact/hp/ +hpo.url=http://purl.obolibrary.org/obo/ hpo.remoteFile=hp.obo hpo.version= hpo.extractedName=hpo.obo @@ -20,7 +28,7 @@ fantom.extractScheme=gz fantom.parsedName=fantom.pg # Ensembl enhancers -ensembl_enhancers.url=http://www.ensembl.org/biomart/martservice?query=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%20%3C!DOCTYPE%20Query%3E%20%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%221%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%20%20%3CDataset%20name%20=%20%22hsapiens_regulatory_feature%22%20interface%20=%20%22default%22%20%3E%3CFilter%20name%20=%20%22regulatory_feature_type_name%22%20value%20=%20%22Enhancer%22/%3E%3CAttribute%20name%20=%20%22chromosome_name%22%20/%3E%3CAttribute%20name%20=%20%22chromosome_start%22%20/%3E%3CAttribute%20name%20=%20%22chromosome_end%22%20/%3E%3CAttribute%20name%20=%20%22feature_type_name%22%20/%3E%3C/Dataset%3E%3C/ +ensembl_enhancers.url=http://grch37.ensembl.org/biomart/martservice?query=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%20%3C!DOCTYPE%20Query%3E%20%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%221%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%20%20%3CDataset%20name%20=%20%22hsapiens_regulatory_feature%22%20interface%20=%20%22default%22%20%3E%3CFilter%20name%20=%20%22regulatory_feature_type_name%22%20value%20=%20%22Enhancer%22/%3E%3CAttribute%20name%20=%20%22chromosome_name%22%20/%3E%3CAttribute%20name%20=%20%22chromosome_start%22%20/%3E%3CAttribute%20name%20=%20%22chromosome_end%22%20/%3E%3CAttribute%20name%20=%20%22feature_type_name%22%20/%3E%3C/Dataset%3E%3C/ #string2entrez.url=http://www.ensembl.org/biomart/martservice?query=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%20%3C!DOCTYPE%20Query%3E%20%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%220%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%20%20%3CDataset%20name%20=%20%22hsapiens_gene_ensembl%22%20interface%20=%20%22default%22%20%3E%20%3CAttribute%20name%20=%20%22ensembl_peptide_id%22%20/%3E%20%3CAttribute%20name%20=%20%22entrezgene%22%20/%3E%20%3CAttribute%20name%20=%20%22hgnc_symbol%22%20/%3E%20%3C/Dataset%3E%20%3C/ ensembl_enhancers.remoteFile=Query%3E @@ -30,19 +38,18 @@ ensembl_enhancers.extractScheme=copy ensembl_enhancers.parsedName=ensembl_enhancers.pg #NSFP - for pathogenicity scores -#this is a 8GB file so might take a while -# onedrive download seems a lot faster - configured to use this -nsfp.url=https://onedrive.live.com/ -nsfp.remoteFile=download?resid=d359d171e382137!98698&authkey=!AN2LZt_Igx_JHK0&ithint=file%2czip -#nsfp.url=ftp://dbnsfp:dbnsfp@dbnsfp.softgenetics.com/ -#nsfp.remoteFile=dbNSFPv3.0b1a.zip -nsfp.version=3.0b1a -nsfp.extractedName=dbNSFPv3.0b2a.zip +# For last release directly downloaded from gdrive link - was a lot faster +#this is a 16GB file so might take a while +# https://sites.google.com/site/jpopgen/dbNSFP +nsfp.url=ftp://dbnsfp:dbnsfp@dbnsfp.softgenetics.com/ +nsfp.remoteFile=dbNSFPv3.4a.zip +nsfp.version=3.4a +nsfp.extractedName=dbNSFPv3.4a.zip nsfp.extractScheme=copy nsfp.parsedName=variant.pg -#dbSNP - 1000 genomes Frequency data -dbSnp.url=ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b142_GRCh37p13/VCF/ +#dbSNP - 1000 genomes Frequency data +dbSnp.url=ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b150_GRCh37p13/VCF/ dbSnp.remoteFile=00-All.vcf.gz dbSnp.version=00 dbSnp.extractedName=dbSNP_00-All.vcf @@ -50,24 +57,27 @@ dbSnp.extractedName=dbSNP_00-All.vcf dbSnp.extractScheme=copy dbSnp.parsedName=frequency.pg -#ExAC Frequency data +#ExAC Frequency data exac.url=ftp://ftp.broadinstitute.org/pub/ExAC_release/current/ -exac.remoteFile=ExAC.r0.3.sites.vep.vcf.gz +exac.remoteFile=ExAC.r0.3.1.sites.vep.vcf.gz exac.version=0.3 -exac.extractedName=ExAC.r0.3.sites.vep.vcf.gz +exac.extractedName=ExAC.r0.3.1.sites.vep.vcf.gz exac.extractScheme=copy exac.parsedName=frequency.pg #ESP Frequency data +#The bulk files of the ESP 6500 exome data below are still primarily in GRCh37 (or HG19) +#the GRCh38 lifted-over positions are added in an extra column in the text file, or in an extra attribute in the INFO +#field in the VCF file. esp.url=http://evs.gs.washington.edu/evs_bulk_data/ esp.remoteFile=ESP6500SI-V2-SSA137.GRCh38-liftover.snps_indels.vcf.tar.gz esp.version= esp.extractedName=ESP_snps_indels esp.extractScheme=tgz esp.parsedName=frequency.pg - + #name of ucsc.ser file created from Jannovar for defining known exon locations -#this needs to be manually provided in the extracted data directory +#this needs to be manually provided in the extracted data directory ucsc.url= ucsc.remoteFile= ucsc.version=hg19 @@ -76,7 +86,7 @@ ucsc.extractScheme=copy ucsc.parsedName= #OMIM MimToGene -omim2gene.url=ftp://ftp.omim.org/OMIM/ +omim2gene.url=https://omim.org/static/omim/data/ omim2gene.remoteFile=mim2gene.txt omim2gene.version= omim2gene.extractedName=OMIM_mim2gene.txt @@ -84,8 +94,8 @@ omim2gene.extractScheme=copy omim2gene.parsedName=omim.pg #OMIM morbidmap -morbidmap.url=ftp://ftp.omim.org/OMIM/ -morbidmap.remoteFile=morbidmap +morbidmap.url=https://data.omim.org/downloads/nLKYV3qGSpe-HOV8OfliKA/ +morbidmap.remoteFile=morbidmap.txt morbidmap.version= morbidmap.extractedName=OMIM_morbidmap.txt morbidmap.extractScheme=copy @@ -100,10 +110,10 @@ omimpheno.extractScheme=copy omimpheno.parsedName=omim.pg ##STRING group -#string2entrez.url=http://www.ensembl.org/biomart/martservice?query=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%20%3C!DOCTYPE%20Query%3E%20%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%220%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%20%20%3CDataset%20name%20=%20%22hsapiens_gene_ensembl%22%20interface%20=%20%22default%22%20%3E%20%3CAttribute%20name%20=%20%22ensembl_peptide_id%22%20/%3E%20%3CAttribute%20name%20=%20%22entrezgene%22%20/%3E%20%3CAttribute%20name%20=%20%22hgnc_symbol%22%20/%3E%20%3C/Dataset%3E%20%3C/ -string2entrez.url=ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz -#string2entrez.remoteFile=Query%3E -string2entrez.remoteFile=Homo_sapiens.gene_info.gz +string2entrez.url=http://www.ensembl.org/biomart/martservice?query=%3C?xml%20version=%221.0%22%20encoding=%22UTF-8%22?%3E%20%3C!DOCTYPE%20Query%3E%20%3CQuery%20%20virtualSchemaName%20=%20%22default%22%20formatter%20=%20%22TSV%22%20header%20=%20%220%22%20uniqueRows%20=%20%220%22%20count%20=%20%22%22%20datasetConfigVersion%20=%20%220.6%22%20%3E%20%20%3CDataset%20name%20=%20%22hsapiens_gene_ensembl%22%20interface%20=%20%22default%22%20%3E%20%3CAttribute%20name%20=%20%22ensembl_peptide_id%22%20/%3E%20%3CAttribute%20name%20=%20%22entrezgene%22%20/%3E%20%3CAttribute%20name%20=%20%22hgnc_symbol%22%20/%3E%20%3C/Dataset%3E%20%3C/ +#string2entrez.url=ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/ +string2entrez.remoteFile=Query%3E +#string2entrez.remoteFile=Homo_sapiens.gene_info.gz string2entrez.version= string2entrez.extractedName=Homo_sapiens.gene_info string2entrez.extractScheme=gz @@ -127,7 +137,7 @@ walkerpheno.version= walkerpheno.extractedName=pheno2gene.txt walkerpheno.extractScheme=copy walkerpheno.parsedName=phenoseries.pg - + walkergene.url= walkergene.remoteFile=pheno2gene.txt walkergene.version= diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/MainTest.java b/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/MainTest.java deleted file mode 100644 index f3d8a2cd1..000000000 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/MainTest.java +++ /dev/null @@ -1,38 +0,0 @@ -package de.charite.compbio.exomiser.db; - -import junit.framework.Test; -import junit.framework.TestCase; -import junit.framework.TestSuite; - -/** - * Unit test for simple App. - */ -public class MainTest - extends TestCase -{ - /** - * Create the test case - * - * @param testName name of the test case - */ - public MainTest( String testName ) - { - super( testName ); - } - - /** - * @return the suite of tests being tested - */ - public static Test suite() - { - return new TestSuite( MainTest.class ); - } - - /** - * Rigourous Test :-) - */ - public void testApp() - { - assertTrue( true ); - } -} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/config/TestConfig.java b/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/config/TestConfig.java deleted file mode 100644 index d3016e910..000000000 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/config/TestConfig.java +++ /dev/null @@ -1,19 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.config; - -import org.springframework.context.annotation.Configuration; - -/** - * - * @author jj8 - */ -@Configuration -public class TestConfig { - - -} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/DiseaseInheritanceCacheTest.java b/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/DiseaseInheritanceCacheTest.java deleted file mode 100644 index a1d937bd7..000000000 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/DiseaseInheritanceCacheTest.java +++ /dev/null @@ -1,127 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.parsers.DiseaseInheritanceCache; -import de.charite.compbio.exomiser.core.model.InheritanceMode; -import de.charite.compbio.exomiser.db.resources.Resource; -import java.nio.file.Paths; -import org.junit.After; -import org.junit.AfterClass; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; - -/** - * Tests for Class DiseaseInheritanceCache. - * @author Jules Jacobsen - */ -public class DiseaseInheritanceCacheTest { - - private static DiseaseInheritanceCache instance; - - public DiseaseInheritanceCacheTest() { - } - - @BeforeClass - public static void setUpClass() { - Resource testResource = new Resource("test_hpo_annotation_resource"); - testResource.setExtractedFileName("phenotype_annotation_test.tab"); - instance = new DiseaseInheritanceCache(); - instance.parseResource(testResource, Paths.get("src/test/resources/data"), Paths.get("target/test-data")); - } - - @AfterClass - public static void tearDownClass() { - } - - @Before - public void setUp() { - } - - @After - public void tearDown() { - } - - /** - * Test of getInheritanceMode method, of class DiseaseInheritanceCache. - */ - @Test - public void testGetInheritanceCodeUnknownOrphanet() { - Integer phenID = 36237; - InheritanceMode expResult = InheritanceMode.UNKNOWN; - InheritanceMode result = instance.getInheritanceMode(phenID); - assertEquals(expResult, result); - } - - /** - * Test of getInheritanceMode method, of class DiseaseInheritanceCache. - */ - @Test - public void testGetInheritanceCodeBoth() { - Integer phenID = 100300; - InheritanceMode expResult = InheritanceMode.DOMINANT_AND_RECESSIVE; - InheritanceMode result = instance.getInheritanceMode(phenID); - assertEquals(expResult, result); - } - - /** - * Test of getInheritanceMode method, of class DiseaseInheritanceCache. - */ - @Test - public void testGetInheritanceCodeRecessive() { - Integer phenID = 100100; - InheritanceMode expResult = InheritanceMode.RECESSIVE; - InheritanceMode result = instance.getInheritanceMode(phenID); - assertEquals(expResult, result); - } - - /** - * Test of getInheritanceMode method, of class DiseaseInheritanceCache. - */ - @Test - public void testGetInheritanceCodeDominant() { - Integer phenID = 100200; - InheritanceMode expResult = InheritanceMode.DOMINANT; - InheritanceMode result = instance.getInheritanceMode(phenID); - assertEquals(expResult, result); - } - - /** - * Test of getInheritanceMode method, of class DiseaseInheritanceCache. - */ - @Test - public void testGetInheritanceCodeUnknownDisease() { - Integer phenID = 000000; - InheritanceMode expResult = InheritanceMode.UNKNOWN; - InheritanceMode result = instance.getInheritanceMode(phenID); - assertEquals(expResult, result); - } - - /** - * Test of getInheritanceMode method, of class DiseaseInheritanceCache. - */ - @Test - public void testGetInheritanceCodeMitochondrial() { - Integer phenID = 560000; - InheritanceMode expResult = InheritanceMode.MITOCHONDRIAL; - InheritanceMode result = instance.getInheritanceMode(phenID); - assertEquals(expResult, result); - } - - @Test - public void testIsEmptyFalse() { - assertFalse(instance.isEmpty()); - } - - @Test - public void testIsEmptyTrue() { - DiseaseInheritanceCache emptyCache = new DiseaseInheritanceCache(); - assertTrue(emptyCache.isEmpty()); - } -} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/HPOOntologyFileParserTest.java b/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/HPOOntologyFileParserTest.java deleted file mode 100644 index eed514849..000000000 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/HPOOntologyFileParserTest.java +++ /dev/null @@ -1,56 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.parsers.HPOOntologyFileParser; -import de.charite.compbio.exomiser.db.resources.Resource; -import java.nio.file.Paths; -import org.junit.After; -import org.junit.AfterClass; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; - -/** - * Tests for the HPO ontology parser - * @author Jules Jacobsen - */ -public class HPOOntologyFileParserTest { - - public HPOOntologyFileParserTest() { - } - - @BeforeClass - public static void setUpClass() { - } - - @AfterClass - public static void tearDownClass() { - } - - @Before - public void setUp() { - } - - @After - public void tearDown() { - } - - /** - * Test of parseHPO method, of class HPOOntologyFileParser. - */ - @Test - public void testParseHPO() { - System.out.println("parseHPO"); - Resource testResource = new Resource("HPO"); - testResource.setExtractedFileName("hp.obo"); - testResource.setParsedFileName("hpoTestOut.pg"); - HPOOntologyFileParser instance = new HPOOntologyFileParser(); - instance.parseResource(testResource, Paths.get("src/test/resources/data"), Paths.get("target/test-data")); - } - -} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/MimToGeneParserTest.java b/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/MimToGeneParserTest.java deleted file mode 100644 index d51542bc6..000000000 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/MimToGeneParserTest.java +++ /dev/null @@ -1,74 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.parsers.MimToGeneParser; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.nio.file.Paths; -import java.util.HashMap; -import java.util.Map; -import java.util.Map.Entry; -import java.util.Set; -import org.junit.After; -import org.junit.AfterClass; -import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; - - -/** - * Test of the MimToGeneParser. - * - * @author Jules Jacobsen - */ -public class MimToGeneParserTest { - - public MimToGeneParserTest() { - } - - @BeforeClass - public static void setUpClass() { - } - - @AfterClass - public static void tearDownClass() { - } - - @Before - public void setUp() { - } - - @After - public void tearDown() { - } - - /** - * Test of parseResource method, of class MimToGeneParser. - */ - @Test - public void testParse() { - Map> mim2geneMap = new HashMap<>(); - Resource testResource = new Resource("MIM2GENE"); - testResource.setExtractedFileName("mim2gene.txt"); - testResource.setParsedFileName("testMim2Gene.out"); - - MimToGeneParser instance = new MimToGeneParser(mim2geneMap); - ResourceOperationStatus expResult = ResourceOperationStatus.SUCCESS; - instance.parseResource(testResource, Paths.get("src/test/resources/data"), Paths.get("target/test-data")); - assertFalse(mim2geneMap.isEmpty()); - for (Entry> entry : mim2geneMap.entrySet()) { - if (entry.getValue().size() > 1) { - System.out.println(entry); - } - } - assertEquals(expResult, testResource.getParseStatus()); - - } - -} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/MorbidMapParserTest.java b/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/MorbidMapParserTest.java deleted file mode 100644 index 224c8d2ed..000000000 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/MorbidMapParserTest.java +++ /dev/null @@ -1,59 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.parsers; - -import de.charite.compbio.exomiser.db.parsers.DiseaseInheritanceCache; -import de.charite.compbio.exomiser.db.parsers.MorbidMapParser; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceOperationStatus; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.HashMap; -import java.util.HashSet; -import java.util.Map; -import java.util.Set; -import static org.junit.Assert.*; -import org.junit.Test; - -/** - * - * @author jj8 - */ -public class MorbidMapParserTest { - - /** - * Test of parseResource method, of class MorbidMapParser. - */ - @Test - public void testParse() { - System.out.println("parse"); - Path testResourceDir = Paths.get("src/test/resources/data"); - Path testOutDir = Paths.get("target/test-data"); - - Resource testResource = new Resource("OMIM_morbidmap"); - testResource.setExtractedFileName("morbidmap"); - testResource.setParsedFileName("testMorbidMap.txt"); - - Resource diseaseInheritanceResource = new Resource("HPO_phenotype_annotation_test"); - diseaseInheritanceResource.setExtractedFileName("phenotype_annotation_test.tab"); - - DiseaseInheritanceCache cache = new DiseaseInheritanceCache(); - cache.parseResource(diseaseInheritanceResource, testResourceDir, testOutDir); - Map> mim2geneMap = new HashMap<>(); - //todo: add some stub data to stop the test failing... - Set geneIds = new HashSet<>(); - geneIds.add(2263); - geneIds.add(2260); - mim2geneMap.put(176943, geneIds); - MorbidMapParser instance = new MorbidMapParser(cache, mim2geneMap); - ResourceOperationStatus expResult = ResourceOperationStatus.SUCCESS; - instance.parseResource(testResource, testResourceDir, testOutDir); - assertEquals(expResult, testResource.getParseStatus()); - - } - -} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/reference/VariantPathogenicityTest.java b/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/reference/VariantPathogenicityTest.java deleted file mode 100644 index d81b38d8c..000000000 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/reference/VariantPathogenicityTest.java +++ /dev/null @@ -1,47 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.reference; - -import de.charite.compbio.exomiser.db.reference.VariantPathogenicity; -import org.junit.Test; -import static org.junit.Assert.*; -import org.junit.Before; - -/** - * - * @author Jules Jacobsen - */ -public class VariantPathogenicityTest { - - private VariantPathogenicity instance; - - private static final float SIFT = 0.1f; - private static final float POLYPHEN = 0.2f; - private static final float MUT_TASTER = 0.3f; - private static final float CADD_RAW_RANK = 0.4f; - private static final float CADD_RAW_SCORE = 0.5f; - - @Before - public void setUp() { - instance = new VariantPathogenicity(1, 2, "A", "B", SIFT, POLYPHEN, MUT_TASTER, CADD_RAW_RANK, CADD_RAW_SCORE); - } - - @Test - public void testGetDumpLine() { - String expResult = String.format("1|2|A|B|0.1|0.2|0.3|0.4|0.5%n"); - String result = instance.toDumpLine(); - assertEquals(expResult, result); - } - - @Test - public void testGetDumpLineWithNullSift() { - String expResult = String.format("1|2|A|B|null|0.2|0.3|0.4|0.5%n"); - instance = new VariantPathogenicity(1, 2, "A", "B", null, POLYPHEN, MUT_TASTER, CADD_RAW_RANK, CADD_RAW_SCORE); - String result = instance.toDumpLine(); - assertEquals(expResult, result); - } -} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/resources/ResourceTest.java b/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/resources/ResourceTest.java deleted file mode 100644 index 6b8a608c0..000000000 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/resources/ResourceTest.java +++ /dev/null @@ -1,53 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ - -package de.charite.compbio.exomiser.db.resources; - -import de.charite.compbio.exomiser.db.resources.Resource; -import org.junit.After; -import org.junit.AfterClass; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; -import static org.junit.Assert.*; - -/** - * - * @author Jules Jacobsen - */ -public class ResourceTest { - - public ResourceTest() { - } - - @BeforeClass - public static void setUpClass() { - } - - @AfterClass - public static void tearDownClass() { - } - - @Before - public void setUp() { - } - - @After - public void tearDown() { - } - - /** - * Test of getStatus method, of class Resource. - */ - @Test - public void testGetStatus() { - Resource instance = new Resource("test"); - String expResult = "Status for: test Download: UNTRIED, Extract: UNTRIED, Parse: UNTRIED"; - String result = instance.getStatus(); - assertEquals(expResult, result); - - } -} diff --git a/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/MainTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/MainTest.java new file mode 100644 index 000000000..953f58e1e --- /dev/null +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/MainTest.java @@ -0,0 +1,55 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.db; + +import junit.framework.Test; +import junit.framework.TestCase; +import junit.framework.TestSuite; + +/** + * Unit test for simple App. + */ +public class MainTest + extends TestCase +{ + /** + * Create the test case + * + * @param testName name of the test case + */ + public MainTest(String testName ) { + super( testName ); + } + + /** + * @return the suite of tests being tested + */ + public static Test suite() { + return new TestSuite( MainTest.class ); + } + + /** + * Rigourous Test :-) + */ + public void testApp() { + assertTrue( true ); + } +} diff --git a/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/config/TestConfig.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/config/TestConfig.java new file mode 100644 index 000000000..ade125b43 --- /dev/null +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/config/TestConfig.java @@ -0,0 +1,39 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.config; + +import org.springframework.context.annotation.Configuration; + +/** + * + * @author jj8 + */ +@Configuration +public class TestConfig { + + +} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/io/PhenodigmDataDumperTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/io/PhenodigmDataDumperTest.java similarity index 84% rename from exomiser-db/src/test/java/de/charite/compbio/exomiser/db/io/PhenodigmDataDumperTest.java rename to exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/io/PhenodigmDataDumperTest.java index 21976a60a..78d68fb3d 100644 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/io/PhenodigmDataDumperTest.java +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/io/PhenodigmDataDumperTest.java @@ -1,22 +1,30 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.io; +package org.monarchinitiative.exomiser.db.io; -import de.charite.compbio.exomiser.db.io.PhenodigmDataDumper; -import java.io.File; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.List; -import javax.sql.DataSource; -import static org.hamcrest.CoreMatchers.notNullValue; -import org.junit.After; -import static org.junit.Assert.*; -import org.junit.Before; import org.junit.BeforeClass; import org.junit.Test; import org.junit.runner.RunWith; @@ -24,6 +32,14 @@ import org.mockito.Mock; import org.mockito.runners.MockitoJUnitRunner; +import javax.sql.DataSource; +import java.io.File; +import java.nio.file.Path; +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.notNullValue; +import static org.junit.Assert.*; + /** * * @author jj8 @@ -39,9 +55,6 @@ public class PhenodigmDataDumperTest { @Mock DataSource mockDataSource; - - public PhenodigmDataDumperTest() { - } @BeforeClass public static void setUpClass() { @@ -55,19 +68,6 @@ public static void setUpClass() { } - @Before - public void setUp() { - - } - - @After - public void tearDown() { - //clean up all files - for (File file : outputDir.listFiles()) { - //file.delete(); - } - } - @Test public void testIsNotNull() { assertThat(instance, notNullValue()); diff --git a/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/DiseaseInheritanceCacheTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/DiseaseInheritanceCacheTest.java new file mode 100644 index 000000000..2e54a70dc --- /dev/null +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/DiseaseInheritanceCacheTest.java @@ -0,0 +1,141 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.junit.*; +import org.monarchinitiative.exomiser.core.prioritisers.model.InheritanceMode; +import org.monarchinitiative.exomiser.db.resources.Resource; + +import java.nio.file.Paths; + +import static org.junit.Assert.*; + +/** + * Tests for Class DiseaseInheritanceCache. + * @author Jules Jacobsen + */ +public class DiseaseInheritanceCacheTest { + + private static DiseaseInheritanceCache instance; + + @BeforeClass + public static void setUpClass() { + Resource testResource = new Resource("test_hpo_annotation_resource"); + testResource.setExtractedFileName("phenotype_annotation_test.tab"); + instance = new DiseaseInheritanceCache(); + instance.parseResource(testResource, Paths.get("src/test/resources/data"), Paths.get("target/test-data")); + } + + @AfterClass + public static void tearDownClass() { + } + + @Before + public void setUp() { + } + + @After + public void tearDown() { + } + + /** + * Test of getInheritanceMode method, of class DiseaseInheritanceCache. + */ + @Test + public void testGetInheritanceCodeUnknownOrphanet() { + Integer phenID = 36237; + InheritanceMode expResult = InheritanceMode.UNKNOWN; + InheritanceMode result = instance.getInheritanceMode(phenID); + assertEquals(expResult, result); + } + + /** + * Test of getInheritanceMode method, of class DiseaseInheritanceCache. + */ + @Test + public void testGetInheritanceCodeBoth() { + Integer phenID = 100300; + InheritanceMode expResult = InheritanceMode.AUTOSOMAL_DOMINANT_AND_RECESSIVE; + InheritanceMode result = instance.getInheritanceMode(phenID); + assertEquals(expResult, result); + } + + /** + * Test of getInheritanceMode method, of class DiseaseInheritanceCache. + */ + @Test + public void testGetInheritanceCodeRecessive() { + Integer phenID = 100100; + InheritanceMode expResult = InheritanceMode.AUTOSOMAL_RECESSIVE; + InheritanceMode result = instance.getInheritanceMode(phenID); + assertEquals(expResult, result); + } + + /** + * Test of getInheritanceMode method, of class DiseaseInheritanceCache. + */ + @Test + public void testGetInheritanceCodeDominant() { + Integer phenID = 100200; + InheritanceMode expResult = InheritanceMode.AUTOSOMAL_DOMINANT; + InheritanceMode result = instance.getInheritanceMode(phenID); + assertEquals(expResult, result); + } + + /** + * Test of getInheritanceMode method, of class DiseaseInheritanceCache. + */ + @Test + public void testGetInheritanceCodeUnknownDisease() { + Integer phenID = 000000; + InheritanceMode expResult = InheritanceMode.UNKNOWN; + InheritanceMode result = instance.getInheritanceMode(phenID); + assertEquals(expResult, result); + } + + /** + * Test of getInheritanceMode method, of class DiseaseInheritanceCache. + */ + @Test + public void testGetInheritanceCodeMitochondrial() { + Integer phenID = 560000; + InheritanceMode expResult = InheritanceMode.MITOCHONDRIAL; + InheritanceMode result = instance.getInheritanceMode(phenID); + assertEquals(expResult, result); + } + + @Test + public void testIsEmptyFalse() { + assertFalse(instance.isEmpty()); + } + + @Test + public void testIsEmptyTrue() { + DiseaseInheritanceCache emptyCache = new DiseaseInheritanceCache(); + assertTrue(emptyCache.isEmpty()); + } +} diff --git a/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/HPOOntologyFileParserTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/HPOOntologyFileParserTest.java new file mode 100644 index 000000000..d23630399 --- /dev/null +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/HPOOntologyFileParserTest.java @@ -0,0 +1,53 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.junit.Test; +import org.monarchinitiative.exomiser.db.resources.Resource; + +import java.nio.file.Paths; + +/** + * Tests for the HPO ontology parser + * @author Jules Jacobsen + */ +public class HPOOntologyFileParserTest { + + /** + * Test of parseHPO method, of class HPOOntologyFileParser. + */ + @Test + public void testParseHPO() { + System.out.println("parseHPO"); + Resource testResource = new Resource("HPO"); + testResource.setExtractedFileName("hp.obo"); + testResource.setParsedFileName("hpoTestOut.pg"); + HPOOntologyFileParser instance = new HPOOntologyFileParser(); + instance.parseResource(testResource, Paths.get("src/test/resources/data"), Paths.get("target/test-data")); + } + +} diff --git a/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/MimToGeneParserTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/MimToGeneParserTest.java new file mode 100644 index 000000000..14f3d9a10 --- /dev/null +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/MimToGeneParserTest.java @@ -0,0 +1,72 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.junit.Test; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; + +import java.nio.file.Paths; +import java.util.Collections; +import java.util.HashMap; +import java.util.Map; +import java.util.Set; + +import static org.junit.Assert.assertEquals; + + +/** + * Test of the MimToGeneParser. + * + * @author Jules Jacobsen + */ +public class MimToGeneParserTest { + + /** + * Test of parseResource method, of class MimToGeneParser. + */ + @Test + public void testParse() { + Resource testResource = new Resource("MIM2GENE"); + testResource.setExtractedFileName("mim2gene.txt"); + testResource.setParsedFileName("testMim2Gene.out"); + + Map> mim2geneMap = new HashMap<>(); + MimToGeneParser instance = new MimToGeneParser(mim2geneMap); + instance.parseResource(testResource, Paths.get("src/test/resources/data"), Paths.get("target/test-data")); + + Map> expected = new HashMap<>(); + expected.put(123463, Collections.singleton(124)); + expected.put(123464, Collections.singleton(123)); + expected.put(123466, Collections.singleton(216)); + expected.put(123468, Collections.singleton(87)); + + assertEquals(expected, mim2geneMap); + assertEquals(ResourceOperationStatus.SUCCESS, testResource.getParseStatus()); + } + +} diff --git a/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/MorbidMapParserTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/MorbidMapParserTest.java new file mode 100644 index 000000000..e4e5946d2 --- /dev/null +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/MorbidMapParserTest.java @@ -0,0 +1,82 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.parsers; + +import org.junit.Rule; +import org.junit.Test; +import org.junit.rules.TemporaryFolder; +import org.monarchinitiative.exomiser.db.resources.Resource; +import org.monarchinitiative.exomiser.db.resources.ResourceOperationStatus; + +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.HashMap; +import java.util.HashSet; +import java.util.Map; +import java.util.Set; + +import static org.junit.Assert.assertEquals; + +/** + * + * @author jj8 + */ +public class MorbidMapParserTest { + + @Rule + public TemporaryFolder temporaryFolder = new TemporaryFolder(); + + /** + * Test of parseResource method, of class MorbidMapParser. + */ + @Test + public void testParse() throws Exception { + System.out.println("parse"); + Path testResourceDir = Paths.get("src/test/resources/data"); + Path testOutDir = temporaryFolder.newFolder().toPath(); + + Resource testResource = new Resource("OMIM_morbidmap"); + testResource.setExtractedFileName("morbidmap"); + testResource.setParsedFileName("testMorbidMap.txt"); + + Resource diseaseInheritanceResource = new Resource("HPO_phenotype_annotation_test"); + diseaseInheritanceResource.setExtractedFileName("phenotype_annotation_test.tab"); + + DiseaseInheritanceCache cache = new DiseaseInheritanceCache(); + cache.parseResource(diseaseInheritanceResource, testResourceDir, testOutDir); + Map> mim2geneMap = new HashMap<>(); + //todo: add some stub data to stop the test failing... + Set geneIds = new HashSet<>(); + geneIds.add(2263); + geneIds.add(2260); + mim2geneMap.put(176943, geneIds); + MorbidMapParser instance = new MorbidMapParser(cache, mim2geneMap); + instance.parseResource(testResource, testResourceDir, testOutDir); + assertEquals(ResourceOperationStatus.SUCCESS, testResource.getParseStatus()); + } + +} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/NSFP2SQLDumpParserTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/NSFP2SQLDumpParserTest.java similarity index 83% rename from exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/NSFP2SQLDumpParserTest.java rename to exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/NSFP2SQLDumpParserTest.java index 87f3a3223..704e57aa4 100644 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/parsers/NSFP2SQLDumpParserTest.java +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/parsers/NSFP2SQLDumpParserTest.java @@ -1,16 +1,37 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.parsers; +package org.monarchinitiative.exomiser.db.parsers; -import static org.hamcrest.CoreMatchers.equalTo; - -import org.junit.Test; -import static org.junit.Assert.*; import org.junit.Before; +import org.junit.Test; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.junit.Assert.assertEquals; +import static org.junit.Assert.assertThat; /** * @@ -22,7 +43,6 @@ public class NSFP2SQLDumpParserTest { @Before public void setUp() { - //instance = new NSFP2SQLDumpParser(HG19RefDictBuilder.build()); instance = new NSFP2SQLDumpParser(); } /** diff --git a/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/reference/VariantPathogenicityTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/reference/VariantPathogenicityTest.java new file mode 100644 index 000000000..dd5febba8 --- /dev/null +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/reference/VariantPathogenicityTest.java @@ -0,0 +1,67 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.reference; + +import org.junit.Before; +import org.junit.Test; + +import static org.junit.Assert.assertEquals; + +/** + * + * @author Jules Jacobsen + */ +public class VariantPathogenicityTest { + + private VariantPathogenicity instance; + + private static final float SIFT = 0.1f; + private static final float POLYPHEN = 0.2f; + private static final float MUT_TASTER = 0.3f; + private static final float CADD_RAW_RANK = 0.4f; + private static final float CADD_RAW_SCORE = 0.5f; + + @Before + public void setUp() { + instance = new VariantPathogenicity(1, 2, "A", "B", SIFT, POLYPHEN, MUT_TASTER, CADD_RAW_RANK, CADD_RAW_SCORE); + } + + @Test + public void testGetDumpLine() { + String expResult = String.format("1|2|A|B|0.1|0.2|0.3|0.4|0.5%n"); + String result = instance.toDumpLine(); + assertEquals(expResult, result); + } + + @Test + public void testGetDumpLineWithNullSift() { + String expResult = String.format("1|2|A|B|null|0.2|0.3|0.4|0.5%n"); + instance = new VariantPathogenicity(1, 2, "A", "B", null, POLYPHEN, MUT_TASTER, CADD_RAW_RANK, CADD_RAW_SCORE); + String result = instance.toDumpLine(); + assertEquals(expResult, result); + } +} diff --git a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/resources/ResourceGroupTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/resources/ResourceGroupTest.java similarity index 79% rename from exomiser-db/src/test/java/de/charite/compbio/exomiser/db/resources/ResourceGroupTest.java rename to exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/resources/ResourceGroupTest.java index f05d810b2..f62756354 100644 --- a/exomiser-db/src/test/java/de/charite/compbio/exomiser/db/resources/ResourceGroupTest.java +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/resources/ResourceGroupTest.java @@ -1,45 +1,60 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + /* * To change this license header, choose License Headers in Project Properties. * To change this template file, choose Tools | Templates * and open the template in the editor. */ -package de.charite.compbio.exomiser.db.resources; +package org.monarchinitiative.exomiser.db.resources; + +import org.junit.*; +import org.monarchinitiative.exomiser.db.parsers.ResourceGroupParser; +import org.monarchinitiative.exomiser.db.parsers.ResourceParser; -import de.charite.compbio.exomiser.db.resources.Resource; -import de.charite.compbio.exomiser.db.resources.ResourceGroup; -import de.charite.compbio.exomiser.db.parsers.ResourceGroupParser; -import de.charite.compbio.exomiser.db.parsers.ResourceParser; -import de.charite.compbio.exomiser.db.parsers.StringParser; import java.nio.file.Path; -import org.junit.After; -import org.junit.AfterClass; + import static org.junit.Assert.*; -import org.junit.Before; -import org.junit.BeforeClass; -import org.junit.Test; /** * * @author jj8 */ public class ResourceGroupTest { - + public ResourceGroupTest() { } - + @BeforeClass public static void setUpClass() { } - + @AfterClass public static void tearDownClass() { } - + @Before public void setUp() { } - + @After public void tearDown() { } @@ -103,7 +118,7 @@ public void testGetResource_Class() { assertEquals(expResult, result); } - + /** * Test of getResource method, of class ResourceGroup. */ @@ -117,7 +132,7 @@ public void testGetResource_IncorrectClassType() { Resource result = instance.getResource(TestParser.class); assertNull(result); } - + /** * Test of getResource method, of class ResourceGroup. */ @@ -130,18 +145,18 @@ public void testGetResource_String() { Resource result = instance.getResource(resourceName); assertEquals(expResult, result); - } - + } + private class TestParser implements ResourceParser { @Override public void parseResource(Resource resource, Path inDir, Path outDir) { throw new UnsupportedOperationException("Not supported yet."); //To change body of generated methods, choose Tools | Templates. } - + } - - + + private class TestResourceGroupParser implements ResourceGroupParser { @Override @@ -153,6 +168,6 @@ public void parseResources(ResourceGroup resourceGroup, Path inDir, Path outDir) public boolean requiredResourcesPresent(ResourceGroup resourceGroup) { throw new UnsupportedOperationException("Not supported yet."); //To change body of generated methods, choose Tools | Templates. } - + } } diff --git a/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/resources/ResourceTest.java b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/resources/ResourceTest.java new file mode 100644 index 000000000..46da4060d --- /dev/null +++ b/exomiser-db/src/test/java/org/monarchinitiative/exomiser/db/resources/ResourceTest.java @@ -0,0 +1,69 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ + +package org.monarchinitiative.exomiser.db.resources; + +import org.junit.*; + +import static org.junit.Assert.assertEquals; + +/** + * + * @author Jules Jacobsen + */ +public class ResourceTest { + + public ResourceTest() { + } + + @BeforeClass + public static void setUpClass() { + } + + @AfterClass + public static void tearDownClass() { + } + + @Before + public void setUp() { + } + + @After + public void tearDown() { + } + + /** + * Test of getStatus method, of class Resource. + */ + @Test + public void testGetStatus() { + Resource instance = new Resource("test"); + String expResult = "Status for: test Download: UNTRIED, Extract: UNTRIED, Parse: UNTRIED"; + String result = instance.getStatus(); + assertEquals(expResult, result); + + } +} diff --git a/exomiser-db/src/test/resources/data/mim2gene.txt b/exomiser-db/src/test/resources/data/mim2gene.txt index cf417fc3f..6c6251c30 100644 --- a/exomiser-db/src/test/resources/data/mim2gene.txt +++ b/exomiser-db/src/test/resources/data/mim2gene.txt @@ -1,23396 +1,16 @@ -# Mim Number Type Gene IDs Approved Gene Symbols -100050 predominantly phenotypes - - -100070 phenotype 100329167 - -100100 phenotype - - -100200 predominantly phenotypes - - -100300 phenotype - - -100500 moved/removed - - -100600 phenotype - - -100640 gene 216 ALDH1A1 -100650 gene/phenotype 217 ALDH2 -100660 gene 218 ALDH3A1 -100670 gene 219 ALDH1B1 -100675 predominantly phenotypes - - -100678 gene 39 ACAT2 -100680 moved/removed - - -100690 gene 1134 CHRNA1 -100700 predominantly phenotypes - - -100710 gene 1140 CHRNB1 -100720 gene 1144 CHRND -100725 gene 1145 CHRNE -100730 gene 1146 CHRNG -100735 moved/removed - - -100740 gene 43 ACHE -100790 gene 429 ASCL1 -100800 phenotype - - -100820 phenotype - - -100850 gene 50 ACO2 -100880 gene 48 ACO1 -100900 moved/removed - - -101000 phenotype - - -101120 predominantly phenotypes - - -101200 phenotype - - -101400 phenotype - - -101600 phenotype - - -101800 phenotype - - -101805 predominantly phenotypes - - -101840 predominantly phenotypes - - -101850 phenotype - - -101900 phenotype - - -102000 predominantly phenotypes - - -102100 phenotype - - -102150 phenotype - - -102200 phenotype - - -102300 phenotype 192142 - -102350 phenotype - - -102370 phenotype - - -102400 predominantly phenotypes - - -102480 gene 49 ACR -102490 moved/removed - - -102500 phenotype - - -102510 phenotype 414058 - -102520 predominantly phenotypes - - -102525 gene 56 ACRV1 -102530 phenotype - - -102540 gene 70 ACTC1 -102545 gene 72 ACTG2 -102550 moved/removed - - -102560 gene 71 ACTG1 -102565 gene 2318 FLNC -102570 moved/removed - - -102573 gene 88 ACTN2 -102574 gene/phenotype 89 ACTN3 -102575 gene 87 ACTN1 -102576 gene 90 ACVR1 -102577 gene 5984 RFC4 -102578 gene 5371 PML -102579 gene 5981 RFC1 -102581 gene 92 ACVR2A -102582 gene 6774 STAT3 -102590 predominantly phenotypes - - -102593 gene 313 AOAH -102595 gene 98 ACYP2 -102600 gene 353 APRT -102610 gene 58 ACTA1 -102620 gene 59 ACTA2 -102630 gene 60 ACTB -102640 moved/removed - - -102642 gene 6646 SOAT1 -102645 gene 327 APEH -102650 predominantly phenotypes - - -102660 predominantly phenotypes - - -102670 gene 8174 MADCAM1 -102680 gene 118 ADD1 -102681 gene 119 ADD2 -102699 predominantly phenotypes 17 AAVS1 -102700 phenotype - - -102710 moved/removed - - -102720 gene 1803 DPP4 -102730 predominantly phenotypes - - -102750 gene 132 ADK -102770 gene 270 AMPD1 -102771 gene 271 AMPD2 -102772 gene 272 AMPD3 -102775 gene 134 ADORA1 -102776 gene 135 ADORA2A -102777 gene - - -102800 phenotype - - -102900 phenotype - - -102910 gene 506 ATP5B -102920 moved/removed - - -102930 moved/removed - - -102940 moved/removed - - -102970 moved/removed - - -102980 gene 116 ADCYAP1 -102981 gene 117 ADCYAP1R1 -102990 moved/removed - - -103000 gene 203 AK1 -103020 gene 204 AK2 -103030 gene 205 AK4 -103050 phenotype - - -103060 gene 159 ADSS -103070 gene 114 ADCY8 -103071 gene 108 ADCY2 -103072 gene 107 ADCY1 -103100 phenotype - - -103180 gene 375 ARF1 -103188 gene 381 ARF5 -103190 gene 377 ARF3 -103195 gene 123 PLIN2 -103200 phenotype - - -103220 gene 291 SLC25A4 -103230 predominantly phenotypes - - -103260 gene 2230 FDX1 -103270 gene 2232 FDXR -103275 gene 133 ADM -103280 gene 283120 H19 -103285 phenotype - - -103300 phenotype - - -103320 gene 375790 AGRN -103321 moved/removed - - -103390 gene 79026 AHNAK -103400 predominantly phenotypes - - -103420 phenotype - - -103470 phenotype - - -103500 phenotype - - -103580 phenotype - - -103581 moved/removed - - -103600 gene/phenotype 213 ALB -103700 gene 124 ADH1A -103710 gene 128 ADH5 -103720 gene/phenotype 125 ADH1B -103730 gene 126 ADH1C -103735 gene 130 ADH6 -103740 gene 127 ADH4 -103780 phenotype - - -103800 moved/removed - - -103830 gene 10327 AKR1A1 -103850 gene 226 ALDOA -103870 gene 230 ALDOC -103880 gene 231 AKR1B1 -103890 gene - - -103900 phenotype - - -103920 predominantly phenotypes - - -103950 gene 2 A2M -104000 phenotype 100034700 - -104100 predominantly phenotypes - - -104110 predominantly phenotypes - - -104130 phenotype - - -104145 gene 173 AFM -104150 gene/phenotype 174 AFP -104155 gene 463 ZFHX3 -104160 gene 23193 GANAB -104170 gene 4668 NAGA -104175 gene 2681 GGTA1P -104180 gene 2595 GANC -104200 phenotype - - -104210 gene 150 ADRA2A -104219 gene 146 ADRA1D -104220 gene 147 ADRA1B -104221 gene 148 ADRA1A -104222 moved/removed - - -104225 gene 4043 LRPAP1 -104230 gene 2526 FUT4 -104240 gene 6484 ST3GAL4 -104250 gene/phenotype 152 ADRA2C -104260 gene 151 ADRA2B -104290 phenotype - - -104300 phenotype - - -104310 phenotype - - -104311 gene 5663 PSEN1 -104350 predominantly phenotypes - - -104400 predominantly phenotypes - - -104500 phenotype - - -104510 phenotype - - -104530 phenotype - - -104570 phenotype - - -104600 predominantly phenotypes - - -104610 gene 26 AOC1 -104613 gene 908 CCT6A -104614 gene 6519 SLC3A1 -104615 gene 6541 SLC7A1 -104620 gene 95 ACY1 -104640 gene 374 AREG -104650 gene 279 AMY2A -104660 gene 280 AMY2B -104700 gene 276 AMY1A -104701 gene 277 AMY1B -104702 gene 278 AMY1C -104740 moved/removed - - -104750 gene 6288 SAA1 -104751 gene 6289 SAA2 -104752 gene 6291 SAA4 -104760 gene 351 APP -104770 gene 325 APCS -104775 gene 333 APLP1 -104776 gene 334 APLP2 -105120 phenotype - - -105150 phenotype - - -105200 phenotype - - -105210 phenotype - - -105250 phenotype - - -105300 predominantly phenotypes - - -105400 phenotype - - -105500 phenotype - - -105550 phenotype - - -105563 predominantly phenotypes 100187749 - -105565 predominantly phenotypes - - -105570 predominantly phenotypes - - -105580 predominantly phenotypes 8066 - -105590 gene 238 ALK -105600 phenotype 981 CDAN3 -105650 phenotype - - -105800 phenotype 116833 ANIB1 -105805 predominantly phenotypes - - -105830 phenotype - - -105835 predominantly phenotypes - - -105850 gene 283 ANG -106050 predominantly phenotypes - - -106070 phenotype - - -106100 phenotype - - -106150 gene/phenotype 183 AGT -106160 moved/removed - - -106165 gene 185 AGTR1 -106180 gene/phenotype 1636 ACE -106190 predominantly phenotypes - - -106195 gene 6508 SLC4A3 -106200 moved/removed - - -106210 phenotype - - -106220 predominantly phenotypes - - -106230 predominantly phenotypes - - -106240 predominantly phenotypes - - -106250 predominantly phenotypes 170 AFA -106260 phenotype - - -106280 predominantly phenotypes - - -106300 phenotype - - -106400 predominantly phenotypes - - -106410 gene 287 ANK2 -106490 gene 306 ANXA3 -106491 gene 307 ANXA4 -106500 predominantly phenotypes - - -106600 phenotype - - -106700 phenotype 6893 TAPVR1 -106750 predominantly phenotypes - - -106900 predominantly phenotypes - - -106990 predominantly phenotypes - - -106995 phenotype - - -107000 phenotype - - -107100 phenotype - - -107200 phenotype 550625 - -107240 moved/removed - - -107250 phenotype - - -107253 moved/removed - - -107254 gene 4273 MIC12 -107257 gene - - -107260 gene - - -107265 gene 930 CD19 -107266 gene 933 CD22 -107269 gene 960 CD44 -107270 gene 952 CD38 -107271 gene 966 CD59 -107272 gene 971 CD72 -107273 gene 969 CD69 -107280 gene 12 SERPINA3 -107285 gene 6590 SLPI -107290 phenotype - - -107300 gene 462 SERPINC1 -107310 gene 6548 SLC9A1 -107320 predominantly phenotypes 100499532 - -107323 gene 501 ALDH7A1 -107325 gene 10849 CD3EAP -107400 gene 5265 SERPINA1 -107410 predominantly phenotypes 390502 SERPINA2 -107440 predominantly phenotypes - - -107450 gene 3454 IFNAR1 -107460 moved/removed - - -107470 gene 3459 IFNGR1 -107480 phenotype - - -107500 predominantly phenotypes - - -107550 predominantly phenotypes - - -107580 gene 7020 TFAP2A -107600 phenotype - - -107601 moved/removed - - -107640 predominantly phenotypes - - -107650 phenotype - - -107670 gene/phenotype 336 APOA2 -107680 gene/phenotype 335 APOA1 -107690 gene 337 APOA4 -107700 predominantly phenotypes - - -107710 gene 341 APOC1 -107720 gene 345 APOC3 -107730 gene/phenotype 338 APOB -107740 gene 347 APOD -107741 gene/phenotype 348 APOE -107748 gene 328 APEX1 -107750 phenotype - - -107760 gene 319 APOF -107770 gene 4035 LRP1 -107773 gene 7026 NR2F2 -107776 gene 358 AQP1 -107777 gene 359 AQP2 -107800 predominantly phenotypes - - -107820 gene 5917 RARS -107830 gene 384 ARG2 -107840 moved/removed - - -107850 predominantly phenotypes - - -107900 predominantly phenotypes - - -107910 gene 1588 CYP19A1 -107920 predominantly phenotypes 8083 - -107930 gene 1644 DDC -107940 gene 408 ARRB1 -107941 gene 409 ARRB2 -107950 moved/removed - - -107970 phenotype - - -108000 predominantly phenotypes - - -108010 phenotype - - -108050 predominantly phenotypes - - -108100 predominantly phenotypes - - -108110 predominantly phenotypes - - -108120 phenotype - - -108130 moved/removed - - -108140 moved/removed - - -108145 phenotype - - -108200 predominantly phenotypes - - -108300 phenotype - - -108320 predominantly phenotypes - - -108330 gene 1543 CYP1A1 -108340 phenotype - - -108345 gene 9 NAT1 -108355 gene 2885 GRB2 -108360 gene 432 ASGR1 -108361 gene 433 ASGR2 -108370 gene 440 ASNS -108390 phenotype - - -108400 moved/removed - - -108410 gene 4677 NARS -108420 phenotype 100653377 - -108450 predominantly phenotypes - - -108500 phenotype - - -108600 phenotype 114610 SAX1 -108650 phenotype - - -108700 predominantly phenotypes - - -108720 phenotype - - -108721 phenotype - - -108725 phenotype 470 ATHS -108728 gene 47 ACLY -108729 gene 509 ATP5C1 -108730 gene 487 ATP2A1 -108731 gene 490 ATP2B1 -108732 gene 493 ATP2B4 -108733 gene 491 ATP2B2 -108740 gene 488 ATP2A2 -108745 gene 527 ATP6V0C -108746 gene 529 ATP6V1E1 -108760 phenotype - - -108770 phenotype - - -108780 gene 4878 NPPA -108800 phenotype 431 ASD1 -108900 phenotype - - -108950 predominantly phenotypes - - -108960 gene 4881 NPR1 -108961 gene 4882 NPR2 -108962 gene 4883 NPR3 -108970 moved/removed - - -108980 phenotype - - -108985 phenotype - - -108990 gene 4270 MIC7 -109000 phenotype - - -109050 predominantly phenotypes - - -109090 gene 6741 SSB -109091 gene 811 CALR -109092 gene 6737 TRIM21 -109100 phenotype - - -109110 gene - - -109120 predominantly phenotypes - - -109130 predominantly phenotypes - - -109135 gene 558 AXL -109150 phenotype - - -109160 phenotype - - -109170 gene 7940 LST1 -109180 predominantly phenotypes 628 - -109190 gene 6510 SLC1A5 -109195 gene 671 BPI -109200 phenotype 100188784 - -109270 gene/phenotype 6521 SLC4A1 -109280 gene 6522 SLC4A2 -109300 predominantly phenotypes - - -109350 phenotype 59330 - -109390 moved/removed - - -109400 phenotype - - -109480 gene 682 BSG -109500 phenotype - - -109530 gene 962 CD48 -109535 gene 958 CD40 -109540 predominantly phenotypes - - -109543 phenotype 8101 - -109545 gene 608 TNFRSF17 -109560 gene 602 BCL3 -109565 gene 604 BCL6 -109580 gene 694 BTG1 -109600 predominantly phenotypes - - -109610 gene 706 TSPO -109630 gene/phenotype 153 ADRB1 -109635 gene 156 ADRBK1 -109636 gene 157 ADRBK2 -109640 gene - - -109650 phenotype - - -109660 phenotype 8212 - -109670 predominantly phenotypes 8213 - -109675 gene 6480 ST6GAL1 -109684 gene 3292 HSD17B1 -109685 gene 3294 HSD17B2 -109690 gene/phenotype 154 ADRB2 -109691 gene 155 ADRB3 -109700 gene 567 B2M -109710 gene 568 B2MR -109715 gene 3283 HSD3B1 -109720 phenotype - - -109730 phenotype - - -109740 predominantly phenotypes - - -109750 gene 644 BLVRA -109760 gene 3350 HTR1A -109770 gene 634 CEACAM1 -109780 gene 7951 - -109800 phenotype - - -109820 predominantly phenotypes - - -109900 predominantly phenotypes - - -110000 predominantly phenotypes - - -110050 predominantly phenotypes - - -110100 phenotype - - -110150 predominantly phenotypes - - -110250 predominantly phenotypes - - -110300 gene/phenotype 28 ABO -110310 predominantly phenotypes - - -110350 phenotype 100187761 - -110450 phenotype - - -110500 phenotype - - -110600 gene/phenotype 420 ART4 -110700 phenotype - - -110720 predominantly phenotypes - - -110750 gene/phenotype 2995 GYPC -110800 phenotype - - -110900 phenotype - - -111000 phenotype - - -111100 gene/phenotype 2525 FUT3 -111130 phenotype - - -111150 phenotype - - -111200 phenotype - - -111250 phenotype - - -111300 gene/phenotype 2993 GYPA -111360 predominantly phenotypes - - -111380 phenotype - - -111400 phenotype - - -111410 moved/removed - - -111500 phenotype - - -111600 phenotype - - -111620 phenotype - - -111680 gene 6007 RHD -111690 phenotype - - -111700 gene/phenotype 6006 RHCE -111730 gene 124872 B4GALNT2 -111740 gene/phenotype 2994 GYPB -111750 phenotype - - -111800 phenotype 6420 - -112000 phenotype - - -112010 phenotype - - -112050 phenotype - - -112100 phenotype - - -112200 phenotype - - -112203 gene 941 CD80 -112205 gene 973 CD79A -112210 gene 931 MS4A1 -112240 predominantly phenotypes - - -112250 phenotype - - -112260 gene 632 BGLAP -112261 gene 650 BMP2 -112262 gene 652 BMP4 -112263 gene 651 BMP3 -112264 gene 649 BMP1 -112265 gene 653 BMP5 -112266 gene 654 BMP6 -112267 gene 655 BMP7 -112270 predominantly phenotypes - - -112300 phenotype - - -112310 phenotype - - -112350 phenotype - - -112370 predominantly phenotypes - - -112410 phenotype 8080 - -112430 predominantly phenotypes - - -112440 phenotype - - -112450 predominantly phenotypes - - -112500 phenotype - - -112600 phenotype - - -112700 phenotype - - -112800 phenotype - - -112900 moved/removed - - -112910 predominantly phenotypes - - -113000 phenotype - - -113100 phenotype - - -113200 phenotype - - -113300 phenotype - - -113301 predominantly phenotypes - - -113310 predominantly phenotypes - - -113400 predominantly phenotypes - - -113450 predominantly phenotypes - - -113470 predominantly phenotypes - - -113475 predominantly phenotypes - - -113477 predominantly phenotypes - - -113480 predominantly phenotypes - - -113500 phenotype - - -113503 gene 624 BDKRB2 -113505 gene 627 BDNF -113508 gene 7533 YWHAH -113510 gene - - -113520 gene 586 BCAT1 -113530 gene 587 BCAT2 -113600 predominantly phenotypes - - -113610 predominantly phenotypes - - -113620 phenotype - - -113630 moved/removed - - -113640 moved/removed - - -113650 phenotype - - -113660 moved/removed - - -113670 phenotype - - -113700 predominantly phenotypes - - -113703 gene 6137 RPL13 -113705 gene 672 BRCA1 -113710 gene 7031 TFF1 -113720 gene - - -113721 gene 8142 - -113725 gene 5458 POU4F2 -113730 gene 7350 UCP1 -113750 phenotype - - -113800 phenotype - - -113810 gene 667 DST -113811 gene 1308 COL17A1 -113900 phenotype - - -113950 phenotype - - -113955 gene - - -113960 predominantly phenotypes - - -113970 phenotype - - -113995 gene 728 C5AR1 -114000 phenotype - - -114010 gene 790 CAD -114019 gene 1013 CDH15 -114020 gene 1000 CDH2 -114021 gene 1001 CDH3 -114025 gene 1496 CTNNA2 -114030 predominantly phenotypes - - -114050 gene 793 CALB1 -114051 gene 794 CALB2 -114065 predominantly phenotypes - - -114070 gene 309 ANXA6 -114078 gene 815 CAMK2A -114080 gene 814 CAMK4 -114085 gene 6281 S100A10 -114090 gene 831 CAST -114100 phenotype - - -114105 gene 5530 PPP3CA -114106 gene 5532 PPP3CB -114107 gene 5533 PPP3CC -114110 gene 6277 S100A6 -114120 moved/removed - - -114130 gene 796 CALCA -114131 gene 799 CALCR -114140 phenotype - - -114150 phenotype - - -114160 gene 797 CALCB -114170 gene 826 CAPNS1 -114180 gene 801 CALM1 -114181 moved/removed - - -114182 gene 805 CALM2 -114183 gene 808 CALM3 -114184 gene 810 CALML3 -114190 gene 10203 CALCRL -114200 phenotype 100381210 - -114204 gene 781 CACNA2D1 -114205 gene 775 CACNA1C -114206 gene 776 CACNA1D -114207 gene 782 CACNB1 -114208 gene 779 CACNA1S -114209 gene 786 CACNG1 -114210 gene 6275 S100A4 -114212 gene 828 CAPS -114213 gene 800 CALD1 -114217 gene 821 CANX -114220 gene 823 CAPN1 -114230 gene 824 CAPN2 -114240 gene 825 CAPN3 -114250 gene 844 CASQ1 -114251 gene 845 CASQ2 -114260 moved/removed - - -114280 gene 1043 CD52 -114290 phenotype - 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- -600639 gene 835 CASP2 -600640 moved/removed - - -600641 gene 6818 SULT1A3 -600642 gene 7921 - -600643 predominantly phenotypes - - -600644 gene 5818 PVRL1 -600645 moved/removed - - -600646 gene 10544 PROCR -600647 gene 3167 HMX2 -600648 moved/removed - - -600649 phenotype - - -600650 gene 1376 CPT2 -600651 phenotype - - -600652 phenotype - - -600653 moved/removed - - -600654 gene 5720 PSME1 -600655 gene 1933 EEF1B2 -600656 moved/removed - - -600657 moved/removed - - -600658 gene 5536 PPP5C -600659 gene 1874 E2F4 -600660 gene 4205 MEF2A -600661 gene 100271849 MEF2B -600662 gene 4208 MEF2C -600663 gene 4209 MEF2D -600664 gene 1147 CHUK -600665 gene 4543 MTNR1A -600666 predominantly phenotypes 5312 PKD3 -600667 gene 2535 FZD2 -600668 phenotype 882 CCAL1 -600669 phenotype 1957 EGI -600670 predominantly phenotypes - - -600671 moved/removed - - -600672 moved/removed - - -600673 gene 7343 UBTF -600674 phenotype - - -600675 gene 7517 XRCC3 -600676 gene 856 CATR1 -600677 moved/removed - - -600678 gene 2956 MSH6 -600679 predominantly phenotypes - - -600680 moved/removed - - -600681 gene 3759 KCNJ2 -600682 gene 6566 SLC16A1 -600683 moved/removed - - -600684 gene 4063 LY9 -600685 gene 3838 KPNA2 -600686 gene 3836 KPNA1 -600687 gene 7074 TIAM1 -600688 gene 1358 CPA2 -600689 moved/removed - - -600690 gene 6988 TCTA -600691 gene 376497 SLC27A1 -600692 gene 7140 TNNT3 -600693 gene 5725 PTBP1 -600694 gene 3572 IL6ST -600695 moved/removed - - -600696 gene 1891 ECH1 -600697 gene 5929 RBBP5 -600698 gene 8091 HMGA2 -600699 moved/removed - - -600700 gene 4026 LPP -600701 gene 3159 HMGA1 -600702 gene 6334 SCN8A -600703 gene - - -600704 moved/removed - - -600705 predominantly phenotypes - - -600706 predominantly phenotypes - - -600707 gene 6726 SRP9 -600708 gene 6727 SRP14 -600709 gene 3376 IARS -600710 moved/removed - - -600711 gene 2118 ETV4 -600712 gene 3190 HNRNPK -600713 gene 3290 HSD11B1 -600714 gene 1843 DUSP1 -600715 gene 7060 THBS4 -600716 gene 26191 PTPN22 -600717 moved/removed - - -600718 moved/removed - - -600719 gene 201288 NOS2P2 -600720 gene 645740 NOS2P1 -600721 phenotype - - -600722 gene 5538 PPT1 -600723 gene 4355 MPP2 -600724 gene 1258 CNGB1 -600725 gene 6469 SHH -600726 gene 3549 IHH -600727 gene 4774 NFIA -600728 gene 4781 NFIB -600729 gene 4782 NFIC -600730 gene 2831 NPBWR1 -600731 gene 2832 NPBWR2 -600732 gene 379 ARL4D -600733 gene 3651 PDX1 -600734 gene 3762 KCNJ5 -600735 gene 3430 IFI35 -600736 predominantly phenotypes - - -600737 phenotype - - -600738 gene 6404 SELPLG -600739 gene 6466 SHC1P2 -600740 phenotype - - -600741 moved/removed - - -600742 gene 7049 TGFBR3 -600743 gene 7023 TFAP4 -600744 gene 7942 TFEB -600745 gene 346 APOC4 -600746 gene 1044 CDX1 -600747 gene 6909 TBX2 -600748 gene 7009 TMBIM6 -600749 gene 1053 CEBPE -600750 gene 4885 NPTX2 -600751 gene 6614 SIGLEC1 -600752 gene 2835 GPR12 -600753 gene 2734 GLG1 -600754 gene 4323 MMP14 -600755 gene 6854 SYN2 -600756 gene 5524 PPP2R4 -600757 phenotype 4965 OFC3 -600758 gene 5747 PTK2 -600759 gene 5664 PSEN2 -600760 gene 6338 SCNN1B -600761 gene 6340 SCNN1G -600762 gene 3262 HPVC1 -600763 gene 7178 TPT1 -600764 gene 3140 MR1 -600765 moved/removed - 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- -600808 phenotype 2032 ENUR2 -600809 moved/removed - - -600810 gene 5332 PLCB4 -600811 gene 1643 DDB2 -600812 gene 6426 SRSF1 -600813 gene 6427 SRSF2 -600814 gene 4361 MRE11A -600815 gene 5425 POLD2 -600816 gene 3312 HSPA8 -600817 gene 7447 VSNL1 -600818 gene 6876 TAGLN -600819 gene 8087 FXR1 -600820 gene 372 ARCN1 -600821 gene 552 AVPR1A -600822 gene 6880 TAF9 -600823 gene 5652 PRSS8 -600824 gene 8048 CSRP3 -600825 gene 6095 RORA -600826 gene 1463 NCAN -600827 gene 5146 PDE6C -600828 gene 539 ATP5O -600829 gene 3636 INPPL1 -600830 gene 7726 TRIM26 -600831 gene 1612 DAPK1 -600832 gene 8125 ANP32A -600833 gene 7982 ST7 -600834 gene 7718 ZNF165 -600835 gene 6387 CXCL12 -600836 gene 1412 CRYBA2 -600837 gene 2668 GDNF -600838 gene 8456 FOXN1 -600839 gene 6557 SLC12A1 -600840 gene 6558 SLC12A2 -600841 predominantly phenotypes - - -600842 gene 2646 GCKR -600843 gene 5024 P2RX3 -600844 gene 22953 P2RX2 -600845 gene 5023 P2RX1 -600846 gene 5025 P2RX4 -600847 moved/removed - - -600848 gene 9612 NCOR2 -600849 gene 9611 NCOR1 -600850 phenotype - - -600851 predominantly phenotypes - - -600852 phenotype - - -600853 gene 3340 NDST1 -600854 moved/removed - - -600855 gene 1859 DYRK1A -600856 gene 1028 CDKN1C -600857 gene 6389 SDHA -600858 phenotype - - -600859 gene 7965 AIMP2 -600860 gene 2971 GTF3A -600861 gene 5997 RGS2 -600862 gene 3267 AGFG1 -600863 gene 1454 CSNK1E -600864 gene 1453 CSNK1D -600865 gene 6252 RTN1 -600866 gene 5134 PDCD2 -600867 gene 6746 SSR2 -600868 gene 6745 SSR1 -600869 gene 2870 GRK6 -600870 gene 2869 GRK5 -600871 gene 2672 GFI1 -600872 moved/removed - - -600873 gene 1486 CTBS -600874 gene 2787 GNG5 -600875 gene 97 ACYP1 -600876 gene 6809 STX3 -600877 gene 3763 KCNJ6 -600878 moved/removed - - -600879 gene 4899 NRF1 -600880 phenotype - - -600881 phenotype - - -600882 phenotype - - -600883 phenotype 3407 IDDM8 -600884 phenotype 1218 CMD1B -600885 moved/removed - - -600886 phenotype - - -600887 gene 4437 MSH3 -600888 gene 7984 ARHGEF5 -600889 gene 3080 CFHR2 -600890 gene 3030 HADHA -600891 moved/removed - - -600892 gene 6493 SIM2 -600893 moved/removed - - -600894 moved/removed - - -600895 gene 2834 PRLHR -600896 gene 2837 UTS2R -600897 gene 2703 GJA8 -600898 gene 6664 SOX11 -600899 gene 5591 PRKDC -600900 gene 6443 SGCB -600901 phenotype - - -600902 gene 22929 SEPHS1 -600903 predominantly phenotypes - - -600904 gene 460 ASTN1 -600905 moved/removed - - -600906 predominantly phenotypes - - -600907 predominantly phenotypes - - -600908 predominantly phenotypes - - -600909 gene 4047 LSS -600910 gene 3641 INSL4 -600911 gene 744 MPPED2 -600912 gene 6941 TCF19 -600913 moved/removed - - -600914 gene 6430 SRSF5 -600915 gene 10763 NES -600916 gene 3631 INPP4A -600917 gene 5506 PPP1R3A -600918 moved/removed - - -600919 phenotype - - -600920 phenotype - - -600921 gene 2254 FGF9 -600922 gene 4638 MYLK -600923 gene 5498 PPOX -600924 gene 2671 GFER -600925 gene 5795 PTPRJ -600926 gene 5791 PTPRE -600927 gene 1032 CDKN2D -600928 gene 8131 NPRL3 -600929 gene 1414 CRYBB1 -600930 gene 6677 SPAM1 -600931 predominantly phenotypes - - -600932 gene 3765 KCNJ9 -600933 gene 2150 F2RL1 -600934 gene 2346 FOLH1 -600935 gene 3764 KCNJ8 -600936 gene 3161 HMMR -600937 gene 3767 KCNJ11 -600938 gene 5930 RBBP6 -600939 gene 3590 IL11RA -600940 gene 3980 LIG3 -600941 gene 645 BLVRB -600942 moved/removed - - -600943 gene 871 SERPINH1 -600944 gene 1725 DHPS -600945 gene 7349 UCN -600946 gene 2690 GHR -600947 gene 9001 HAP1 -600948 gene 4336 MOBP -600949 gene - - -600950 gene 15 AANAT -600951 gene 7013 TERF1 -600952 predominantly phenotypes - - -600953 gene 3606 IL18 -600954 gene 1611 DAP -600955 phenotype - - -600956 gene 269 AMHR2 -600957 gene 268 AMH -600958 gene 4607 MYBPC3 -600959 gene 1315 COPB1 -600960 gene 6418 SET -600961 moved/removed - - -600962 phenotype - - -600963 gene 147912 SIX5 -600964 moved/removed - - -600965 phenotype - - -600966 gene 3996 LLGL1 -600967 gene 1875 E2F5 -600968 gene 6559 SLC12A3 -600969 phenotype - - -600970 gene 4646 MYO6 -600971 phenotype - - -600972 phenotype - - -600973 moved/removed - - -600974 phenotype - - -600975 phenotype 2728 GLC3B -600976 gene 2195 FAT1 -600977 phenotype - - -600978 gene 4050 LTB -600979 gene 4055 LTBR -600980 gene 1758 DMP1 -600981 gene 5239 PGM5 -600982 gene 4214 MAP3K1 -600983 gene 4306 NR3C2 -600984 gene 1388 ATF6B -600985 gene 7148 TNXB -600986 gene 80128 TRIM46 -600987 predominantly phenotypes - - -600988 gene 4122 MAN2A2 -600989 predominantly phenotypes - - -600990 moved/removed - - -600991 predominantly phenotypes - - -600992 moved/removed - - -600993 gene 4089 SMAD4 -600994 phenotype - - -600995 phenotype - - -600996 phenotype - - -600997 gene 2048 EPHB2 -600998 gene 2776 GNAQ -600999 gene 4150 MAZ -601000 moved/removed - - -601001 phenotype - - -601002 gene 2937 GSS -601003 phenotype - - -601004 predominantly phenotypes - - -601005 phenotype - - -601006 moved/removed - - -601007 gene 3953 LEPR -601008 moved/removed - - -601009 gene 7082 TJP1 -601010 gene 6939 TCF15 -601011 gene 773 CACNA1A -601012 gene 774 CACNA1B -601013 gene 777 CACNA1E -601014 gene 1739 DLG1 -601015 gene 10577 NPC2 -601016 predominantly phenotypes - - -601017 gene 6640 SNTA1 -601018 moved/removed - - -601019 gene 6536 SLC6A9 -601020 gene 942 CD86 -601021 gene 4928 NUP98 -601022 gene 4795 NFKBIL1 -601023 gene 7415 VCP -601024 gene 1173 AP2M1 -601025 gene 163 AP2B1 -601026 gene 160 AP2A1 -601027 predominantly phenotypes - - -601028 gene 961 CD47 -601029 gene 4232 MEST -601030 gene 6038 RNASE4 -601031 gene 114822 RHPN1 -601032 gene 5585 PKN1 -601033 gene 3911 LAMA5 -601034 moved/removed - - -601035 gene 3187 HNRNPH1 -601036 moved/removed - - -601037 gene 3185 HNRNPF -601038 gene 1735 DIO3 -601039 predominantly phenotypes - - -601040 gene 949 SCARB1 -601041 gene 7089 TLE2 -601042 phenotype - - -601043 moved/removed - - -601044 moved/removed - - -601045 gene 1500 CTNND1 -601046 gene 4321 MMP12 -601047 gene 857 CAV1 -601048 gene 858 CAV2 -601049 moved/removed - - -601050 moved/removed - - -601051 gene 10232 MSLN -601052 gene 5300 PIN1 -601053 gene 5364 PLXNB1 -601054 gene 5362 PLXNA2 -601055 gene 5361 PLXNA1 -601056 gene 597 BCL2A1 -601057 gene 10016 PDCD6 -601058 gene 3021 H3F3B -601059 moved/removed - - -601060 gene 5168 ENPP2 -601061 gene 6633 SNRPD2 -601062 gene 6634 SNRPD3 -601063 gene 6632 SNRPD1 -601064 gene 677 ZFP36L1 -601065 gene 16 AARS -601066 gene 5018 OXA1L -601067 phenotype - - -601068 phenotype 50968 FCMTE1 -601069 gene 8187 ZNF239 -601070 gene 3601 IL15RA -601071 phenotype - - -601072 phenotype - - -601073 moved/removed - - -601074 gene 10658 CELF1 -601075 predominantly phenotypes - - -601076 phenotype - - -601077 gene 3881 KRT31 -601078 gene 3888 KRT82 -601079 gene 7310 ZRSR1 -601080 gene 199746 U2AF1L4 -601081 gene 225 ABCD2 -601082 gene 7328 UBE2H -601083 predominantly phenotypes - - -601084 gene - - -601085 moved/removed - - -601086 phenotype 207115 - -601087 moved/removed - - -601088 predominantly phenotypes - - -601089 gene 2294 FOXF1 -601090 gene 2296 FOXC1 -601091 gene 2297 FOXD1 -601092 gene 2298 FOXD4 -601093 gene 2299 FOXI1 -601094 gene 2301 FOXE3 -601095 predominantly phenotypes - - -601096 predominantly phenotypes - - -601097 gene 5376 PMP22 -601098 phenotype - - -601099 gene 6503 SLA -601100 gene 6782 HSPA13 -601101 phenotype 780903 - -601102 gene 1974 EIF4A2 -601103 gene 8076 MFAP5 -601104 phenotype - - -601105 gene 1513 CTSK -601106 moved/removed - - -601107 gene 1244 ABCC2 -601108 moved/removed - - -601109 gene 3362 HTR6 -601110 phenotype - - -601111 moved/removed - - -601112 gene 7296 TXNRD1 -601113 gene 3308 HSPA4 -601114 gene 4356 MPP3 -601115 gene 2913 GRM3 -601116 gene 2918 GRM8 -601117 gene 7064 THOP1 -601118 gene 819 CAMLG -601119 gene 8192 CLPP -601120 gene 1003 CDH5 -601121 gene 5228 PGF -601122 gene 3357 HTR2B -601123 gene 6489 ST8SIA1 -601124 gene 6405 SEMA3F -601125 gene 3099 HK2 -601126 gene 7110 TMF1 -601127 predominantly phenotypes - - -601128 gene 3020 H3F3A -601129 gene/phenotype 1558 CYP2C8 -601130 gene 1559 CYP2C9 -601131 gene 1562 CYP2C18 -601132 gene 8844 KSR1 -601133 gene 22952 CYP2G1P -601134 gene 3703 STT3A -601135 gene 2637 GBX2 -601136 gene 57324 - -601137 moved/removed - - -601138 predominantly phenotypes 390226 GUCY2EP -601139 gene 7728 ZNF175 -601140 gene 26472 PPP1R14B -601141 gene 7881 KCNAB1 -601142 gene 8514 KCNAB2 -601143 gene 1639 DCTN1 -601144 phenotype - - -601145 gene 1476 CSTB -601146 gene 8200 GDF5 -601147 gene 392255 GDF6 -601148 gene 4184 SMCP -601149 gene 3419 IDH3A -601150 gene 1663 DDX11 -601151 gene 440081 DDX12P -601152 phenotype - - -601153 gene 2272 FHIT -601154 phenotype - - -601155 gene 23526 HMHA1 -601156 gene 6356 CCL11 -601157 gene 1669 DEFA4 -601158 gene 5599 MAPK8 -601159 gene 1230 CCR1 -601160 predominantly phenotypes - - -601161 predominantly phenotypes - - -601162 phenotype 9193 SPG9 -601163 phenotype - - -601164 moved/removed - - -601165 predominantly phenotypes - - -601166 gene 2838 GPR15 -601167 gene 5028 P2RY1 -601168 gene 1809 DPYSL3 -601169 moved/removed - - -601170 predominantly phenotypes - - -601171 moved/removed - - -601172 gene 1464 CSPG4 -601173 moved/removed - - -601174 moved/removed - - -601175 gene 402 ARL2 -601176 gene 2730 GCLM -601177 gene 378 ARF4 -601178 gene 4076 CAPRIN1 -601179 gene 5901 RAN -601180 gene 5902 RANBP1 -601181 gene 5903 RANBP2 -601182 gene 4999 ORC2 -601183 gene 1397 CRIP2 -601184 gene 5611 DNAJC3 -601185 gene 6781 STC1 -601186 phenotype - - -601187 predominantly phenotypes - - -601188 gene - - -601189 gene 5441 POLR2L -601190 gene 5149 PDE6H -601191 gene 2079 ERH -601192 gene 5322 PLA2G5 -601193 gene 167 CRISP1 -601194 gene 7096 TLR1 -601195 predominantly phenotypes - - -601196 gene 7799 PRDM2 -601197 gene 7275 TUB -601198 phenotype - - -601199 gene/phenotype 846 CASR -601200 phenotype - - -601201 gene 7795 - -601202 phenotype 1484 CTAA2 -601203 gene 9173 IL1RL1 -601204 gene 5738 PTGFRN -601205 gene 6495 SIX1 -601206 gene 5450 POU2AF1 -601207 gene 1609 DGKQ -601208 phenotype 3410 IDDM11 -601209 gene 5093 PCBP1 -601210 gene 5094 PCBP2 -601211 gene 976 CD97 -601212 gene 2185 PTK2B -601213 gene 6059 ABCE1 -601214 phenotype - - -601215 gene 545 ATR -601216 predominantly phenotypes - - -601217 predominantly phenotypes - - -601218 gene 104 ADARB1 -601219 moved/removed - - -601220 predominantly phenotypes - - -601221 gene - - -601222 moved/removed - - -601223 predominantly phenotypes - - -601224 phenotype - - -601225 gene 8215 DVL1P1 -601226 moved/removed - - -601227 moved/removed - - -601228 phenotype - - -601229 moved/removed - - -601230 predominantly phenotypes - - -601231 gene 2475 MTOR -601232 gene 5294 PIK3CG -601233 gene 3626 INHBC -601234 gene 4666 NACA -601235 gene 1662 DDX10 -601236 gene 1601 DAB2 -601237 gene 7732 RNF112 -601238 phenotype - - -601239 gene 1837 DTNA -601240 gene 2593 GAMT -601241 gene 3065 HDAC1 -601242 gene 84557 MAP1LC3A -601243 gene 7156 TOP3A -601244 gene 2977 GUCY1A2 -601245 gene 8208 CHAF1B -601246 gene 10036 CHAF1A -601247 gene 6655 SOS2 -601248 gene 274 BIN1 -601249 gene 5635 PRPSAP1 -601250 gene 4482 MSRA -601251 moved/removed - - -601252 gene 2219 FCN1 -601253 gene 859 CAV3 -601254 gene 5608 MAP2K6 -601255 gene 547 KIF1A -601256 moved/removed - - -601257 gene 1653 DDX1 -601258 gene 1573 CYP2J2 -601259 gene 258 AMBN -601260 gene 7586 ZKSCAN1 -601261 gene 7589 ZSCAN21 -601262 gene 7564 ZNF16 -601263 gene 5605 MAP2K2 -601264 moved/removed - - -601265 gene 4838 NODAL -601266 gene 1854 DUT -601267 gene 729230 CCR2 -601268 gene 1232 CCR3 -601269 gene 708 C1QBP -601270 gene 4051 CYP4F3 -601271 gene 2981 GUCA2B -601272 gene 6642 SNX1 -601273 gene 8218 CLTCL1 -601274 gene 22949 PTGR1 -601275 gene 2823 GPM6A -601276 gene 7730 ZNF177 -601277 phenotype - - -601278 gene 2483 FRG1 -601279 gene 8214 DGCR6 -601280 gene 4081 MAB21L1 -601281 gene 7869 SEMA3B -601282 gene 5339 PLEC -601283 phenotype - - -601284 gene 94 ACVRL1 -601285 gene 7979 SHFM1 -601286 moved/removed - - -601287 phenotype - - -601288 gene 7534 YWHAZ -601289 gene 7529 YWHAB -601290 gene 2810 SFN -601291 gene 7368 UGT8 -601292 gene 6799 SULT1A2 -601293 gene 6009 RHEB -601294 moved/removed - - -601295 gene 6555 SLC10A2 -601296 gene 4593 MUSK -601297 gene 6665 SOX15 -601298 moved/removed - - -601299 gene 657 BMPR1A -601300 gene 91 ACVR1B -601301 gene 51645 PPIL1 -601302 gene 5534 PPP3R1 -601303 gene 1155 TBCB -601304 gene 4809 NHP2L1 -601305 gene 3361 HTR5A -601306 gene 3059 HCLS1 -601307 moved/removed - - -601308 phenotype 8201 - -601309 gene 5727 PTCH1 -601310 gene 1579 CYP4A11 -601311 gene 8435 SOAT2 -601312 moved/removed - - -601313 gene 5310 PKD1 -601314 gene 3094 HINT1 -601315 predominantly phenotypes - - -601316 phenotype - - -601317 phenotype - - -601318 phenotype 3412 IDDM13 -601319 predominantly phenotypes - - -601320 moved/removed - - -601321 phenotype - - -601322 predominantly phenotypes - - -601323 gene 4924 NUCB1 -601324 gene 3184 HNRNPD -601325 gene 5067 CNTN3 -601326 gene 5010 CLDN11 -601327 gene 6327 SCN2B -601328 gene 6339 SCNN1D -601329 gene 3984 LIMK1 -601330 gene 2984 GUCY2C -601331 phenotype - - -601332 gene 283078 MKX -601333 gene 6830 SUPT6H -601334 gene 147700 KLC3 -601335 gene 6416 MAP2K4 -601336 gene 7841 MOGS -601337 gene 5991 RFX3 -601338 predominantly phenotypes - - -601339 moved/removed - - -601340 gene 8190 MIA -601341 predominantly phenotypes - - -601342 gene 1434 CSE1L -601343 moved/removed - - -601344 predominantly phenotypes - - -601345 predominantly phenotypes - - -601346 phenotype - - -601347 predominantly phenotypes - - -601348 predominantly phenotypes - - -601349 phenotype - - -601350 predominantly phenotypes - - -601351 predominantly phenotypes - - -601352 predominantly phenotypes - - -601353 predominantly phenotypes - - -601354 moved/removed - - -601355 predominantly phenotypes - - -601356 phenotype - - -601357 phenotype - - -601358 phenotype - - -601359 moved/removed - - -601360 predominantly phenotypes - - -601361 gene 2662 GDF10 -601362 phenotype 8026 - -601363 phenotype 8151 - -601364 gene 1012 CDH13 -601365 gene 1855 DVL1 -601366 gene 4087 SMAD2 -601367 phenotype - - -601368 gene 1857 DVL3 -601369 phenotype - - -601370 predominantly phenotypes - - -601371 predominantly phenotypes - - -601372 predominantly phenotypes - - -601373 gene 1234 CCR5 -601374 predominantly phenotypes - - -601375 predominantly phenotypes - - -601376 predominantly phenotypes - - -601377 moved/removed - - -601378 moved/removed - - -601379 predominantly phenotypes - - -601380 gene 1945 EFNA4 -601381 gene 1944 EFNA3 -601382 phenotype - - -601383 gene 363 AQP6 -601384 gene 4061 LY6E -601385 gene 7991 TUSC3 -601386 phenotype - - -601387 gene 7251 TSG101 -601388 phenotype - - -601389 predominantly phenotypes - - -601390 phenotype - - -601391 gene 6357 CCL13 -601392 gene 6358 CCL14 -601393 gene 6359 CCL15 -601394 gene 6360 CCL16 -601395 gene 6349 CCL3L1 -601396 gene 7479 WNT8B -601397 gene 6862 T -601398 gene 7423 VEGFB -601399 phenotype - - -601400 moved/removed - - -601401 gene 8079 MLF2 -601402 gene 4291 MLF1 -601403 gene 1793 DOCK1 -601404 gene 8111 GPR68 -601405 gene 11330 CTRC -601406 gene 605 BCL7A -601407 phenotype 4813 NIDDM2 -601408 gene 7994 KAT6A -601409 gene 10524 KAT5 -601410 phenotype - - -601411 gene 6444 SGCD -601412 phenotype 1689 DFNA7 -601413 gene 1734 DIO2 -601414 phenotype - - -601415 gene 4605 MYBL2 -601416 gene 7922 SLC39A7 -601417 gene 7923 HSD17B8 -601418 gene 6238 RRBP1 -601419 phenotype - - -601420 predominantly phenotypes - - -601421 gene 3735 KARS -601422 gene 7798 LUZP1 -601423 gene 6996 TDG -601424 gene 5019 OXCT1 -601425 gene 6917 TCEA1 -601426 gene 7182 NR2C2 -601427 predominantly phenotypes - - -601428 gene 100151683 RNU4ATAC -601429 gene 100151684 RNU6ATAC -601430 gene 5976 UPF1 -601431 gene 7154 TRNAA1 -601432 gene 7232 TRNAR3 -601433 moved/removed - - -601434 gene 6500 SKP1 -601435 gene 728622 SKP1P2 -601436 gene 6502 SKP2 -601437 gene 2217 FCGRT -601438 predominantly phenotypes - - -601439 gene 10060 ABCC9 -601440 gene 8526 DGKE -601441 gene 8525 DGKZ -601442 gene 1072 CFL1 -601443 gene 1073 CFL2 -601444 gene 2647 BLOC1S1 -601445 gene 4715 NDUFB9 -601446 moved/removed - - -601447 gene 8078 USP5 -601448 gene 4863 NPAT -601449 predominantly phenotypes - - -601450 predominantly phenotypes - - -601451 moved/removed - - -601452 phenotype - - -601453 predominantly phenotypes - - -601454 phenotype 7889 PSORS3 -601455 phenotype - - -601456 gene 22915 MMRN1 -601457 phenotype - - -601458 phenotype 3378 IBD2 -601459 gene 5368 PNOC -601460 gene 6578 SLCO2A1 -601461 gene 474 ATOH1 -601462 phenotype - - -601463 gene 3036 HAS1 -601464 gene 3899 AFF3 -601465 gene 1716 DGUOK -601466 predominantly phenotypes - - -601467 gene 4085 MAD2L1 -601468 gene 4144 MAT2A -601469 gene 5746 PTH2R -601470 gene 1524 CX3CR1 -601471 phenotype 7880 MBS2 -601472 phenotype - - -601473 gene 7627 ZNF75A -601474 moved/removed - - -601475 gene 5822 PWP2 -601476 gene 7805 LAPTM5 -601477 predominantly phenotypes - - -601478 gene 4640 MYO1A -601479 gene 4643 MYO1E -601480 gene 4542 MYO1F -601481 gene 4651 MYO10 -601482 gene 1810 DR1 -601483 gene 5178 PEG3 -601484 gene 6414 SEPP1 -601485 gene 112755 STX1B -601486 gene 1618 DAZL -601487 gene 5468 PPARG -601488 gene 4689 NCF4 -601489 gene/phenotype 3483 IGFALS -601490 gene 4778 NFE2 -601491 gene 3653 IPW -601492 phenotype - - -601493 phenotype - - -601494 phenotype - - -601495 phenotype - - -601496 gene 2674 GFRA1 -601497 gene 573 BAG1 -601498 gene 5190 PEX6 -601499 phenotype 6012 RIEG2 -601500 gene 6608 SMO -601501 gene 55737 VPS35 -601502 gene 2210 FCGR1B -601503 gene 100132417 FCGR1C -601504 gene 6397 SEC14L1 -601505 gene 7705 ZNF146 -601506 gene 4735 SEPT2 -601507 gene 1176 AP3S1 -601508 moved/removed - - -601509 gene 8836 GGH -601510 gene 22937 SCAP -601511 gene 6776 STAT5A -601512 gene 6778 STAT6 -601513 gene 2257 FGF12 -601514 gene 2256 FGF11 -601515 gene 2259 FGF14 -601516 gene 7536 SF1 -601517 gene 6311 ATXN2 -601518 phenotype - - -601519 gene 521 ATP5I -601520 gene 6361 CCL17 -601521 gene 11082 ESM1 -601522 gene 2886 GRB7 -601523 gene 2887 GRB10 -601524 gene 2888 GRB14 -601525 gene 1116 CHI3L1 -601526 gene 1117 CHI3L2 -601527 gene 8092 ALX1 -601528 gene 7424 VEGFC -601529 gene 7181 NR2C1 -601530 gene 8878 SQSTM1 -601531 gene 1241 LTB4R -601532 gene 839 CASP6 -601533 gene 2515 ADAM2 -601534 gene 3760 KCNJ3 -601535 gene 1946 EFNA5 -601536 phenotype - - -601537 phenotype - - -601538 gene 5626 PROP1 -601539 phenotype - - -601540 gene 6046 BRD2 -601541 gene 8019 BRD3 -601542 gene 5308 PITX2 -601543 phenotype - - -601544 phenotype - - -601545 gene 5048 PAFAH1B1 -601546 gene 5629 PROX1 -601547 phenotype - - -601548 gene 2202 EFEMP1 -601549 phenotype - - -601550 phenotype - - -601551 phenotype - - -601552 phenotype - - -601553 phenotype - - -601554 gene 6993 DYNLT1 -601555 gene 8153 RND2 -601556 gene 6310 ATXN1 -601557 gene 32 ACACB -601558 gene 11030 RBPMS -601559 phenotype - - -601560 predominantly phenotypes - - -601561 predominantly phenotypes - - -601562 gene 8655 DYNLL1 -601563 predominantly phenotypes - - -601564 gene 5645 PRSS2 -601565 gene 3394 IRF8 -601566 gene 3621 ING1 -601567 gene 3998 LMAN1 -601568 gene 120 ADD3 -601569 gene 7326 UBE2G1 -601570 gene 7476 WNT7A -601571 gene 830 CAPZA2 -601572 gene 832 CAPZB -601573 gene 2146 EZH2 -601574 gene 8148 TAF15 -601575 gene 2355 FOSL2 -601576 gene 5802 PTPRS -601577 gene 5790 PTPRCAP -601578 gene 900 CCNG1 -601579 gene 4946 OAZ1 -601580 gene 829 CAPZA1 -601581 gene 4897 NRCAM -601582 gene 3635 INPP5D -601583 phenotype - - -601584 gene 8073 PTP4A2 -601585 gene 7803 PTP4A1 -601586 gene 5734 PTGER4 -601587 gene 11013 TMSB15A -601588 moved/removed - - -601589 gene 5922 RASA2 -601590 gene 2125 EVPL -601591 gene 5593 PRKG2 -601592 gene 5913 RAPSN -601593 gene 580 BARD1 -601594 gene 3720 JARID2 -601595 gene 4086 SMAD1 -601596 phenotype - - -601597 gene 7832 BTG2 -601598 gene 5789 PTPRD -601599 gene 8082 SSPN -601600 gene 2119 ETV5 -601601 gene 7021 TFAP2B -601602 gene 7022 TFAP2C -601603 gene 3937 LCP2 -601604 gene 3594 IL12RB1 -601605 moved/removed - - -601606 phenotype - - -601607 gene 6598 SMARCB1 -601608 predominantly phenotypes - - -601609 gene 3033 HADH -601610 gene 696 BTN1A1 -601611 gene 8170 SLC14A2 -601612 phenotype - - -601613 gene 643 CXCR5 -601614 gene 9423 NTN1 -601615 gene 21 ABCA3 -601616 phenotype - - -601617 gene 5959 RDH5 -601618 gene 54345 SOX18 -601619 gene 5900 RALGDS -601620 gene 6910 TBX5 -601621 gene 6926 TBX3 -601622 gene 7291 TWIST1 -601623 gene 7337 UBE3A -601624 gene 2220 FCN2 -601625 gene 417 ART1 -601626 phenotype - - -601627 gene 6607 SMN2 -601628 moved/removed - - -601629 gene 5121 PCP4 -601630 moved/removed - - -601631 phenotype - - -601632 gene 5457 POU4F1 -601633 gene 4905 NSF -601634 phenotype - - -601635 moved/removed - - -601636 gene 3037 HAS2 -601637 gene 1595 CYP51A1 -601638 gene 23647 ARFIP2 -601639 gene 5566 PRKACA -601640 moved/removed - - -601641 gene 8309 ACOX2 -601642 gene 3595 IL12RB2 -601643 gene 5525 PPP2R5A -601644 gene 5526 PPP2R5B -601645 gene 5527 PPP2R5C -601646 gene 5528 PPP2R5D -601647 gene 5529 PPP2R5E -601648 gene 5710 PSMD4 -601649 moved/removed - - -601650 phenotype - - -601651 gene 4676 NAP1L4 -601652 gene 4653 MYOC -601653 gene 2138 EYA1 -601654 gene 2139 EYA2 -601655 gene 2140 EYA3 -601656 gene 2627 GATA6 -601657 gene 1833 EPYC -601658 gene 729330 OC90 -601659 gene 8209 C21orf33 -601660 moved/removed - - -601661 gene 7329 UBE2I -601662 gene 214 ALCAM -601663 gene 2100 ESR2 -601664 gene 23020 SNRNP200 -601665 phenotype - - -601666 phenotype 3414 IDDM15 -601667 gene 284 ANGPT1 -601668 predominantly phenotypes - - -601669 moved/removed - - -601670 gene 8193 DPF1 -601671 gene 5977 DPF2 -601672 gene 8110 DPF3 -601673 gene 1993 ELAVL2 -601674 gene 2145 EZH1 -601675 phenotype - - -601676 phenotype 7808 - -601677 gene 4698 NDUFA5 -601678 phenotype - - -601679 gene 2969 GTF2I -601680 phenotype - - -601681 gene 5705 PSMC5 -601682 phenotype 2723 GLC1C -601683 gene 10229 COQ7 -601684 gene 6195 RPS6KA1 -601685 gene 6196 RPS6KA2 -601686 gene 7011 TEP1 -601687 gene 3859 KRT12 -601688 gene 3248 HPGD -601689 gene 6875 TAF4B -601690 gene 7941 PLA2G7 -601691 gene 24 ABCA4 -601692 gene 7045 TGFBI -601693 gene 7351 UCP2 -601694 phenotype 7839 - -601695 gene 1448 CSN3 -601696 predominantly phenotypes - - -601697 gene 5271 SERPINB8 -601698 gene 5799 PTPRN2 -601699 gene 5740 PTGIS -601700 phenotype - - -601701 predominantly phenotypes - - -601702 gene 6093 ROCK1 -601703 gene 7408 VASP -601704 gene 4283 CXCL9 -601705 phenotype - - -601706 predominantly phenotypes - - -601707 predominantly phenotypes - - -601708 predominantly phenotypes - - -601709 phenotype - - -601710 gene 1983 EIF5 -601711 gene 7185 TRAF1 -601712 gene 329 BIRC2 -601713 gene 2764 GMFB -601714 gene 7004 TEAD4 -601715 moved/removed - - -601716 gene 6780 STAU1 -601717 gene 6813 STXBP2 -601718 phenotype - - -601719 gene 9496 TBX4 -601720 gene 22944 KIN -601721 gene 330 BIRC3 -601722 moved/removed - - -601723 gene 7855 FZD5 -601724 gene 4760 NEUROD1 -601725 gene 4761 NEUROD2 -601726 gene 4762 NEUROG1 -601727 moved/removed - - -601728 gene/phenotype 5728 PTEN -601729 gene 8463 TEAD2 -601730 gene 5279 PIGC -601731 gene 471 ATIC -601732 gene 6599 SMARCC1 -601733 gene 4258 MGST2 -601734 gene 6601 SMARCC2 -601735 gene 6602 SMARCD1 -601736 gene 6603 SMARCD2 -601737 gene 6604 SMARCD3 -601738 gene 2134 EXTL1 -601739 gene 4211 MEIS1 -601740 gene 4212 MEIS2 -601741 gene 8065 CUL5 -601742 gene 10155 TRIM28 -601743 gene 9180 OSMR -601744 phenotype - - -601745 gene 3775 KCNK1 -601746 gene 10525 HYOU1 -601747 gene 373 TRIM23 -601748 gene 2966 GTF2H2 -601749 gene 11146 GLMN -601750 gene 2967 GTF2H3 -601751 gene 2847 MCHR1 -601752 gene 953 ENTPD1 -601753 gene 5481 PPID -601754 gene 7353 UFD1L -601755 gene 8220 DGCR14 -601756 gene 2591 GALNT3 -601757 gene 5191 PEX7 -601758 gene 5193 PEX12 -601759 predominantly phenotypes - - -601760 gene 2968 GTF2H4 -601761 gene 840 CASP7 -601762 gene 843 CASP10 -601763 gene 841 CASP8 -601764 phenotype 8181 - -601765 moved/removed - - -601766 gene 8326 FZD9 -601767 gene 3092 HIP1 -601768 gene 6455 SH3GL1 -601769 gene 7421 VDR -601770 gene 4888 NPY6R -601771 gene 1545 CYP1B1 -601772 gene 3014 H2AFX -601773 gene 5798 PTPRN -601774 gene 4249 MGAT5 -601775 predominantly phenotypes - - -601776 phenotype - - -601777 phenotype - - -601778 gene 5442 POLRMT -601779 moved/removed - - -601780 phenotype - - -601781 moved/removed - - -601782 gene 7016 TESK1 -601783 gene 4135 MAP6 -601784 gene 40 ASIC2 -601785 gene 5373 PMM2 -601786 gene 5372 PMM1 -601787 gene 6877 TAF5 -601788 gene 2660 MSTN -601789 gene 5194 PEX13 -601790 gene 5540 NPY4R -601791 gene 5195 PEX14 -601792 gene 5504 PPP1R2 -601793 moved/removed - - -601794 phenotype - - -601795 gene 5595 MAPK3 -601796 gene 6874 TAF4 -601797 gene 202 AIM1 -601798 gene 10007 GNPDA1 -601799 gene 5272 SERPINB9 -601800 phenotype - - -601801 gene 6668 SP2 -601802 gene 8820 HESX1 -601803 phenotype - - -601804 gene 6670 SP3 -601805 gene 2852 GPER1 -601806 gene 4175 MCM6 -601807 gene 4327 MMP19 -601808 phenotype - - -601809 predominantly phenotypes - - -601810 gene 1763 DNA2 -601811 predominantly phenotypes - - -601812 predominantly phenotypes - - -601813 phenotype - - -601814 gene 486 FXYD2 -601815 phenotype - - -601816 phenotype - - -601817 gene 4832 NME3 -601818 gene 4833 NME4 -601819 gene 2186 BPTF -601820 phenotype - - -601821 gene 6084 RNY1 -601822 gene 6085 RNY3 -601823 gene 6086 RNY4 -601824 gene 6090 RNY5 -601825 gene 374291 NDUFS7 -601826 gene 8527 DGKD -601827 moved/removed - - -601828 gene 4929 NR4A2 -601829 predominantly phenotypes - - -601830 moved/removed - - -601831 gene 8349 HIST2H2BE -601832 gene 6159 RPL29 -601833 gene 199 AIF1 -601834 gene 1237 CCR8 -601835 gene 1235 CCR6 -601836 gene 22920 KIFAP3 -601837 gene 3981 LIG4 -601838 gene 3705 ITPK1 -601839 gene 2049 EPHB3 -601840 moved/removed - - -601841 gene 5104 SERPINA5 -601842 moved/removed - - -601843 gene 6528 SLC5A5 -601844 gene 65266 WNK4 -601845 gene 2928 GSC2 -601846 phenotype 4195 MDRV -601847 phenotype - - -601848 gene 9804 TOMM20 -601849 moved/removed - - -601850 moved/removed - - -601851 gene 9575 CLOCK -601852 gene 7087 ICAM5 -601853 predominantly phenotypes - - -601854 gene 1608 DGKG -601855 gene 9138 ARHGEF1 -601856 gene 10520 ZNF211 -601857 moved/removed - - -601858 gene 1047 CLGN -601859 phenotype - - -601860 gene 3295 HSD17B4 -601861 gene 5994 RFXAP -601862 moved/removed - - -601863 gene 5993 RFX5 -601864 moved/removed - - -601865 gene 5352 PLOD2 -601866 gene 10507 SEMA4D -601867 gene 483 ATP1B3 -601868 phenotype - - -601869 phenotype - - -601870 gene 10988 METAP2 -601871 gene 1466 CSRP2 -601872 gene 6542 SLC7A2 -601873 gene 2583 B4GALNT1 -601874 gene 22936 ELL2 -601875 moved/removed - - -601876 predominantly phenotypes - - -601877 gene/phenotype 7044 LEFTY2 -601878 gene 7071 KLF10 -601879 gene 3965 LGALS9 -601880 gene 6376 CX3CL1 -601881 gene 30062 RAX -601882 gene 1676 DFFA -601883 gene 1677 DFFB -601884 phenotype - - -601885 phenotype - - -601886 gene 430 ASCL2 -601887 phenotype - - -601888 phenotype 4266 MHS6 -601889 gene 606 NBEAP1 -601890 gene 5754 PTK7 -601891 gene 1474 CST6 -601892 gene 3839 KPNA3 -601893 gene 7204 TRIO -601894 phenotype - - -601895 gene 7186 TRAF2 -601896 gene 7187 TRAF3 -601897 gene 7707 ZNF148 -601898 gene 2693 GHSR -601899 gene 8027 STAM -601900 gene 3662 IRF4 -601901 gene 6543 SLC8A2 -601902 gene 4998 ORC1 -601903 gene 7367 UGT2B17 -601904 moved/removed - - -601905 gene 5875 RABGGTA -601906 gene 7480 WNT10B -601907 gene 4756 NEO1 -601908 gene 2843 GPR20 -601909 gene 2844 GPR21 -601910 gene 2845 GPR22 -601911 gene 1748 DLX4 -601912 gene 7341 SUMO1 -601913 gene 439 ASNA1 -601914 gene 5549 PRELP -601915 gene 7079 TIMP4 -601916 gene 7873 MANF -601917 gene 222 ALDH3B2 -601918 gene 2661 GDF9 -601919 gene 2151 F2RL2 -601920 gene/phenotype 182 JAG1 -601921 moved/removed - - -601922 gene 285 ANGPT2 -601923 moved/removed - - -601924 gene 1314 COPA -601925 gene 396 ARHGDIA -601926 gene 7069 THRSP -601927 phenotype - - -601928 gene 3892 KRT86 -601929 gene 489 ATP2A3 -601930 gene 646 BNC1 -601931 gene 599 BCL2L2 -601932 gene 100129528 MUC8 -601933 gene 1407 CRY1 -601934 gene 2873 GPS1 -601935 gene 2874 GPS2 -601936 gene 5074 PAWR -601937 gene 8202 NCOA3 -601938 moved/removed - - -601939 gene 6732 SRPK1 -601940 gene 6429 SRSF4 -601941 phenotype 3405 IDDM6 -601942 phenotype - - -601943 gene 8683 SRSF9 -601944 gene 6431 SRSF6 -601945 gene 6433 SFSWAP -601946 moved/removed - - -601947 gene 6666 SOX12 -601948 moved/removed - - -601949 gene 785 CACNB4 -601950 gene 161882 ZFPM1 -601951 gene 1195 CLK1 -601952 phenotype - - -601953 gene 902 CCNH -601954 phenotype - - -601955 gene 1022 CDK7 -601956 gene 2675 GFRA2 -601957 predominantly phenotypes - - -601958 gene 784 CACNB3 -601959 gene 6787 NEK4 -601960 gene 6364 CCL20 -601961 gene 3275 PRMT2 -601962 gene 6892 TAPBP -601963 gene 7265 TTC1 -601964 gene 7266 DNAJC7 -601965 gene 1903 S1PR3 -601966 gene 6248 RSC1A1 -601967 gene 7477 WNT7B -601968 gene 7482 WNT2B -601969 gene 1755 DMBT1 -601970 gene 7434 VIPR2 -601971 moved/removed - - -601972 gene 6096 RORB -601973 gene 5919 RARRES2 -601974 gene 1901 S1PR1 -601975 gene 5317 PKP1 -601976 predominantly phenotypes - - -601977 phenotype - - -601978 gene 10280 SIGMAR1 -601979 predominantly phenotypes - - -601980 gene 8513 LIPF -601981 gene 6039 RNASE6 -601982 gene 4968 OGG1 -601983 gene 11184 MAP4K1 -601984 gene 8031 NCOA4 -601985 gene 8030 CCDC6 -601986 moved/removed - - -601987 gene 1375 CPT1B -601988 gene 3985 LIMK2 -601989 gene 6284 S100A13 -601990 gene 7161 TP73 -601991 gene 4858 NOVA2 -601992 phenotype 2420 FRDA2 -601993 gene 10499 NCOA2 -601994 gene 7870 - -601995 gene 7143 TNR -601996 moved/removed - - -601997 gene 637 BID -601998 gene 2101 ESRRA -601999 gene 3975 LHX1 -602000 gene 84172 POLR1B -602001 gene 4889 NPY5R -602002 gene 7791 ZYX -602003 gene 4033 LRMP -602004 gene 5753 PTK6 -602005 gene 6653 SORL1 -602006 gene 9261 MAPKAPK2 -602007 gene 1399 CRKL -602008 gene 3843 IPO5 -602009 gene 1339 COX6A2 -602010 gene 9295 SRSF11 -602011 gene 8466 ST11 -602012 gene 954 ENTPD2 -602013 gene 5436 POLR2G -602014 phenotype - - -602015 gene 4957 ODF2 -602016 gene 10365 KLF2 -602017 gene 5689 PSMB1 -602018 gene 4902 NRTN -602019 gene 6713 SQLE -602020 gene 4097 MAFG -602021 gene 4659 PPP1R12A -602022 gene 7851 MALL -602023 gene 1188 CLCNKB -602024 gene 1187 CLCNKA -602025 phenotype - - -602026 gene 5264 PHYH -602027 gene 7014 TERF2 -602028 moved/removed - - -602029 moved/removed - - -602030 gene 2529 FUT7 -602031 gene 5229 PGGT1B -602032 phenotype - - -602033 gene 2009 EML1 -602034 gene 1395 CRHR2 -602035 gene 5531 PPP4C -602036 moved/removed - - -602037 gene 399 RHOH -602038 gene 1850 DUSP8 -602039 gene 8661 EIF3A -602040 gene 4685 NCAM2 -602041 gene 4824 NKX3-1 -602042 gene 2841 GPR18 -602043 gene 2853 GPR31 -602044 gene 7352 UCP3 -602045 gene 6015 RING1 -602046 gene 2923 PDIA3 -602047 gene 5140 PDE3B -602048 gene 5879 RAC1 -602049 gene 5880 RAC2 -602050 gene 5881 RAC3 -602051 gene 5301 PIN1P1 -602052 gene 2580 GAK -602053 gene 1316 KLF6 -602054 gene 6899 TBX1 -602055 gene 3638 INSIG1 -602056 gene 1672 DEFB1 -602057 moved/removed - - -602058 gene 5273 SERPINB10 -602059 gene 3671 ISLR -602060 gene 7113 TMPRSS2 -602061 gene 2069 EREG -602062 gene 4814 NINJ1 -602063 gene 6888 TALDO1 -602064 gene 3612 IMPA1 -602065 gene 105 ADARB2 -602066 phenotype - - -602067 moved/removed - - -602068 predominantly phenotypes - - -602069 gene 8829 NRP1 -602070 gene 8828 NRP2 -602071 phenotype - - -602072 gene 1337 COX6A1 -602073 moved/removed - - -602074 gene 7818 DAP3 -602075 gene 6304 SATB1 -602076 gene 7442 TRPV1 -602077 moved/removed - - -602078 phenotype - - -602079 phenotype - - -602080 phenotype - - -602081 phenotype - - -602082 phenotype 982 CDB2 -602083 phenotype - - -602084 moved/removed - - -602085 phenotype 8103 - -602086 phenotype 424 ARVD3 -602087 phenotype 425 ARVD4 -602088 phenotype - - -602089 phenotype - - -602090 gene 4054 LTBP3 -602091 gene 4053 LTBP2 -602092 phenotype - - -602093 phenotype - - -602094 moved/removed - - -602095 gene 7782 SLC30A4 -602096 phenotype 8081 AD5 -602097 phenotype 7396 USH1E -602098 gene 5347 PLK1 -602099 phenotype 255 ALS5 -602100 gene 5316 PKNOX1 -602101 gene 7122 CLDN5 -602102 gene 6829 SUPT5H -602103 gene 7109 TRAPPC10 -602104 gene 6452 SH3BP2 -602105 gene 4438 MSH4 -602106 gene 3772 KCNJ15 -602107 predominantly phenotypes - - -602108 gene 4147 MATN2 -602109 gene 4148 MATN3 -602110 gene 3177 SLC29A2 -602111 phenotype - - -602112 gene 758 MPPED1 -602113 gene 8085 KMT2D -602114 predominantly phenotypes - - -602115 gene 2255 FGF10 -602116 gene 8089 YEATS4 -602117 gene 4692 NDN -602118 gene 1105 CHD1 -602119 gene 1106 CHD2 -602120 gene 1107 CHD3 -602121 gene 1729 DIAPH1 -602122 gene 6731 SRP72 -602123 gene 818 CAMK2G -602124 phenotype 1866 DYT7 -602125 gene 1352 COX10 -602126 gene 7541 ZBTB14 -602127 gene 6525 SMTN -602128 gene 10634 GAS2L1 -602129 gene 4650 MYO9B -602130 gene 7867 MAPKAPK3 -602131 gene 7262 PHLDA2 -602132 gene 4253 CTAGE5 -602133 gene 5198 PFAS -602134 phenotype 2112 ETM2 -602135 gene 7802 DNALI1 -602136 gene 5189 PEX1 -602137 gene 4695 NDUFA2 -602138 gene 4700 NDUFA6 -602139 gene 4701 NDUFA7 -602140 gene 4714 NDUFB8 -602141 gene 4728 NDUFS8 -602142 gene 5333 PLCD1 -602143 gene 7159 TP53BP2 -602144 gene 676 BRDT -602145 gene 5036 PA2G4 -602146 gene 89884 LHX4 -602147 moved/removed - - -602148 gene 6656 SOX1 -602149 gene 5307 PITX1 -602150 gene 6591 SNAI2 -602151 gene 1856 DVL2 -602152 predominantly phenotypes - - -602153 gene 3887 KRT81 -602154 gene 7956 - -602155 gene 7993 UBXN8 -602156 moved/removed - - -602157 gene 4857 NOVA1 -602158 gene 1207 CLNS1A -602159 gene 7464 CORO2A -602160 gene 7029 TFDP2 -602161 gene 5721 PSME2 -602162 gene 6847 SYCP1 -602163 gene 7325 UBE2E2 -602164 gene 3360 HTR4 -602165 gene 5987 TRIM27 -602166 gene 8120 AP3B2 -602167 gene 2103 ESRRB -602168 gene 7443 VRK1 -602169 gene 7444 VRK2 -602170 gene 4615 MYD88 -602171 gene 10223 GPA33 -602172 gene 1582 CYP8B1 -602173 gene 7095 SEC62 -602174 gene 2848 GPR25 -602175 gene 5690 PSMB2 -602176 gene 5691 PSMB3 -602177 gene 5692 PSMB4 -602178 gene 1101 CHAD -602179 gene 3316 HSPB2 -602180 gene 6494 SIPA1 -602181 gene 27044 SND1 -602182 gene 5169 ENPP3 -602183 gene 579 NKX3-2 -602184 gene 4731 NDUFV3 -602185 moved/removed - - -602186 gene 7425 VGF -602187 gene 7748 ZNF195 -602188 gene 2043 EPHA4 -602189 gene 5998 RGS3 -602190 gene 2045 EPHA7 -602191 gene 1999 ELF3 -602192 gene 102 ADAM10 -602193 gene 2030 SLC29A1 -602194 gene 5654 HTRA1 -602195 gene 3315 HSPB1 -602196 phenotype - - -602197 predominantly phenotypes 8163 - -602198 gene 8099 CDK2AP1 -602199 phenotype - - -602200 phenotype - - -602201 gene 1893 ECM1 -602202 gene 1650 DDOST -602203 gene 6588 SLN -602204 gene 636 BICD1 -602205 moved/removed - - -602206 gene 64284 RAB17 -602207 gene 22931 RAB18 -602208 gene 3766 KCNJ10 -602209 gene 6239 RREB1 -602210 gene 3646 EIF3E -602211 gene 2306 FOXD2 -602212 gene 6477 SIAH1 -602213 gene 6478 SIAH2 -602214 gene 1455 CSNK1G2 -602215 gene 1673 DEFB4A -602216 gene 6794 STK11 -602217 gene 6386 SDCBP -602218 gene 6299 SALL1 -602219 gene 6297 SALL2 -602220 gene 10633 RASL10A -602221 gene 7750 ZMYM2 -602222 moved/removed - - -602223 gene 1978 EIF4EBP1 -602224 gene 1979 EIF4EBP2 -602225 gene 1406 CRX -602226 gene 4064 CD180 -602227 gene 6363 CCL19 -602228 gene 6934 TCF7L2 -602229 gene 6663 SOX10 -602230 gene 6450 SH3BGR -602231 gene 6612 SUMO3 -602232 gene 3786 KCNQ3 -602233 gene 317 APAF1 -602234 gene 842 CASP9 -602235 gene 3785 KCNQ2 -602236 moved/removed - - -602237 moved/removed - - -602238 gene 23404 EXOSC2 -602239 gene 1592 CYP26A1 -602240 gene 7745 ZKSCAN8 -602241 gene 4285 MIPEP -602242 gene 1175 AP2S1 -602243 gene 977 CD151 -602244 gene 1776 DNASE1L3 -602245 gene 9567 GTPBP1 -602246 gene 7746 ZSCAN9 -602247 phenotype - - -602248 phenotype - - -602249 predominantly phenotypes - - -602250 gene 3604 TNFRSF9 -602251 gene 26519 TIMM10 -602252 predominantly phenotypes - - -602253 gene 9314 KLF4 -602254 gene 402055 SRRD -602255 gene 10494 STK25 -602256 gene 5470 PPEF2 -602257 gene 950 SCARB2 -602258 moved/removed - - -602259 gene 7267 TTC3 -602260 gene 5187 PER1 -602261 gene 4324 MMP15 -602262 gene 4325 MMP16 -602263 moved/removed - - -602264 gene 6695 SPOCK1 -602265 gene 4739 NEDD9 -602266 moved/removed - - -602267 gene 101 ADAM8 -602268 gene 314 AOC2 -602269 gene 421 ARVCF -602270 gene 475 ATOX1 -602271 predominantly phenotypes - - -602272 gene 6925 TCF4 -602273 gene 2589 GALNT1 -602274 gene 2590 GALNT2 -602275 gene 2979 GUCA1B -602276 gene 6871 TADA2A -602277 gene 7738 ZNF184 -602278 gene 4734 NEDD4 -602279 gene 8106 PABPN1 -602280 gene 7287 TULP1 -602281 gene 4240 MFGE8 -602282 gene 1902 LPAR1 -602283 gene 6355 CCL8 -602284 gene 656 BMP8B -602285 gene 4326 MMP17 -602286 gene 6309 SC5D -602287 gene 10961 ERP29 -602288 gene 6242 RTKN -602289 gene 10589 DRAP1 -602290 gene 22954 TRIM32 -602291 gene 2302 FOXJ1 -602292 gene 1892 ECHS1 -602293 gene 10519 CIB1 -602294 gene 3169 FOXA1 -602295 gene 3171 FOXA3 -602296 gene 9179 AP4M1 -602297 gene 1949 EFNB3 -602298 gene 7879 RAB7A -602299 moved/removed - - -602300 gene 9514 GAL3ST1 -602301 gene 2648 KAT2A -602302 gene 55806 HR -602303 gene 8850 KAT2B -602304 gene 9975 NR1D2 -602305 moved/removed - - -602306 gene 5863 RGL2 -602307 gene 11059 WWP1 -602308 gene 11060 WWP2 -602309 gene 7288 TULP2 -602310 gene 5937 RBMS1 -602311 gene 181 AGRP -602312 moved/removed - - -602313 gene 5017 OVOL1 -602314 gene 3898 LAD1 -602315 gene 5606 MAP2K3 -602316 gene 9588 PRDX6 -602317 gene 6769 STAC -602318 gene 7978 MTERF -602319 gene 4745 NELL1 -602320 gene 4753 NELL2 -602321 gene 373156 GSTK1 -602322 gene 7012 TERC -602323 gene 3768 KCNJ12 -602324 gene 3189 HNRNPH3 -602325 gene 1982 EIF4G2 -602326 gene 6147 RPL23A -602327 gene 5662 PSD -602328 moved/removed - - -602329 gene 6400 SEL1L -602330 gene 3983 ABLIM1 -602331 gene 5001 ORC5 -602332 gene 23397 NCAPH -602333 gene 2012 EMP1 -602334 gene 2013 EMP2 -602335 gene 2014 EMP3 -602336 gene 4919 ROR1 -602337 gene 4920 ROR2 -602338 gene 8899 PRPF4B -602339 gene 6565 SLC15A2 -602340 predominantly phenotypes - - -602341 gene 2305 FOXM1 -602342 phenotype - - -602343 gene 7220 TRPC1 -602344 gene 5051 PAFAH2 -602345 gene 7222 TRPC3 -602346 gene 8506 CNTNAP1 -602347 phenotype - - -602348 gene 6619 SNAPC3 -602349 gene 4917 NTN3 -602350 gene 4900 NRGN -602351 gene 1240 CMKLR1 -602352 gene 2797 GNRH2 -602353 gene 7041 TGFB1I1 -602354 gene 27040 LAT -602355 gene 7189 TRAF6 -602356 gene 7188 TRAF5 -602357 gene 7456 WIPF1 -602358 gene 3060 HCRT -602359 gene 5348 FXYD1 -602360 gene 2628 GATM -602361 phenotype - - -602362 gene 5905 RANGAP1 -602363 moved/removed - - -602364 gene 1521 CTSW -602365 gene 1075 CTSC -602366 gene 3611 ILK -602367 gene 4884 NPTX1 -602368 gene 2895 GRID2 -602369 gene 3491 CYR61 -602370 gene 2765 GML -602371 gene 2181 ACSL3 -602372 gene 7455 ZAN -602373 gene 1265 CNN2 -602374 gene 1266 CNN3 -602375 gene 6182 MRPL12 -602376 gene 3455 IFNAR2 -602377 gene 1759 DNM1 -602378 gene 1785 DNM2 -602379 moved/removed - - -602380 gene 7348 UPK1B -602381 gene 4665 NAB2 -602382 gene 5337 PLD1 -602383 gene 4969 OGN -602384 gene 5338 PLD2 -602385 gene 6819 SULT1C2 -602386 gene 7988 ZNF212 -602387 gene 5939 RBMS2 -602388 gene 8189 SYMPK -602389 gene 7284 TUFM -602390 phenotype - - -602391 gene 10400 PEMT -602392 gene 3061 HCRTR1 -602393 gene 3062 HCRTR2 -602394 gene 9221 NOLC1 -602395 gene 57678 GPAM -602396 gene 653145 ANXA8 -602397 gene 5205 ATP8B1 -602398 phenotype - - -602399 gene 6300 MAPK12 -602400 predominantly phenotypes - - -602401 phenotype 101101768 - -602402 gene 2303 FOXC2 -602403 gene 642 BLMH -602404 phenotype 5072 PARK3 -602405 moved/removed - - -602406 gene 9421 HAND1 -602407 gene 9464 HAND2 -602408 gene 9572 NR1D1 -602409 gene 8028 MLLT10 -602410 gene 7862 BRPF1 -602411 gene 2135 EXTL2 -602412 gene 6229 RPS24 -602413 gene 6391 SDHC -602414 gene 320 APBA1 -602415 gene 1838 DTNB -602416 gene 10239 AP3S2 -602417 moved/removed - - -602418 predominantly phenotypes - - -602419 gene 1960 EGR3 -602420 gene 3744 KCNA10 -602421 gene 1080 CFTR -602422 gene 7884 SLBP -602423 gene 10062 NR1H3 -602424 gene 1761 DMRT1 -602425 gene 4216 MAP3K4 -602426 gene 4931 NVL -602427 gene 6911 TBX6 -602428 gene 3038 HAS3 -602429 phenotype 2724 GLC1D -602430 gene 6091 ROBO1 -602431 gene 6092 ROBO2 -602432 gene 10133 OPTN -602433 phenotype - - -602434 gene 550 AUP1 -602435 gene 10450 PPIE -602436 gene 4277 MICB -602437 gene 2644 GCHFR -602438 gene 3299 HSF4 -602439 moved/removed - - -602440 phenotype - - -602441 gene 1154 CISH -602442 gene 6453 ITSN1 -602443 gene 7511 XPNPEP1 -602444 gene 6940 ZNF354A -602445 gene 5274 SERPINI1 -602446 gene 2262 GPC5 -602447 gene 5445 PON2 -602448 gene 4217 MAP3K5 -602449 gene 8165 AKAP1 -602450 phenotype - - -602451 gene 5031 P2RY6 -602452 gene 699 BUB1 -602453 gene 3681 ITGAD -602454 gene 10076 PTPRU -602455 predominantly phenotypes - - -602456 moved/removed - - -602457 gene 8772 FADD -602458 gene 6272 SORT1 -602459 phenotype - - -602460 gene 5459 POU4F3 -602461 gene 140885 SIRPA -602462 gene 1400 CRMP1 -602463 gene 1808 DPYSL2 -602464 gene 9618 TRAF4 -602465 gene 10252 SPRY1 -602466 gene 10253 SPRY2 -602467 moved/removed - - -602468 gene 55607 PPP1R9A -602469 gene 2352 FOLR3 -602470 gene 8000 PSCA -602471 predominantly phenotypes - - -602472 predominantly phenotypes - - -602473 phenotype - - -602474 gene 9088 PKMYT1 -602475 phenotype 7933 - -602476 moved/removed - - -602477 phenotype 2234 FEB2 -602478 gene 1787 TRDMT1 -602479 gene 5453 POU3F1 -602480 gene 5455 POU3F3 -602481 phenotype - - -602482 phenotype - - -602483 phenotype - - -602484 predominantly phenotypes - - -602485 phenotype - - -602486 gene 10940 POP1 -602487 gene 10247 HRSP12 -602488 gene 9266 CYTH2 -602489 gene 10657 KHDRBS1 -602490 gene 8204 NRIP1 -602491 phenotype - - -602492 gene 5806 PTX3 -602493 gene 7405 UVRAG -602494 gene 6368 CCL23 -602495 gene 6369 CCL24 -602496 gene 4357 MPST -602497 predominantly phenotypes - - -602498 gene 10342 TFG -602499 phenotype 791229 MACOM -602500 gene 2804 GOLGB1 -602501 phenotype - - -602502 gene 2800 GOLGA1 -602503 gene 10023 FRAT1 -602504 gene 6474 SHOX2 -602505 gene 5829 PXN -602506 moved/removed - - -602507 gene 7844 RNF103 -602508 gene 5049 PAFAH1B2 -602509 gene 2803 GOLGA4 -602510 gene 5794 PTPRH -602511 predominantly phenotypes - - -602512 gene 6002 RGS12 -602513 gene 10636 RGS14 -602514 gene 6004 RGS16 -602515 gene 2822 GPLD1 -602516 gene 5999 RGS4 -602517 gene 6000 RGS7 -602518 gene 3960 LGALS4 -602519 gene 7874 USP7 -602520 gene 5607 MAP2K5 -602521 gene 5598 MAPK7 -602522 phenotype - - -602523 gene 1826 DSCAM -602524 gene 5163 PDK1 -602525 gene 5164 PDK2 -602526 moved/removed - - -602527 gene 5166 PDK4 -602528 gene 7278 TUBA3C -602529 gene 7846 TUBA1A -602530 gene 10376 TUBA1B -602531 predominantly phenotypes - - -602532 gene 7955 - -602533 gene 11315 PARK7 -602534 gene 8773 SNAP23 -602535 phenotype - - -602536 gene 22930 RAB3GAP1 -602537 gene 726 CAPN5 -602538 gene 10659 CELF2 -602539 gene 4215 MAP3K3 -602540 phenotype - - -602541 phenotype - - -602542 gene 689 BTF3 -602543 gene 690 BTF3P11 -602544 gene 5071 PARK2 -602545 gene 5796 PTPRK -602546 gene 8128 ST8SIA2 -602547 gene 7903 ST8SIA4 -602548 gene 4987 OPRL1 -602549 gene 5586 PKN2 -602550 gene 406 ARNTL -602551 predominantly phenotypes - - -602552 gene 4927 NUP88 -602553 predominantly phenotypes - - -602554 predominantly phenotypes - - -602555 predominantly phenotypes - - -602556 predominantly phenotypes - - -602557 predominantly phenotypes - - -602558 predominantly phenotypes - - -602559 gene 7514 XPO1 -602560 gene - - -602561 predominantly phenotypes - - -602562 predominantly phenotypes - - -602563 gene 4825 NKX6-1 -602564 predominantly phenotypes - - -602565 gene 6370 CCL25 -602566 gene 5027 P2RX7 -602567 gene 3987 LIMS1 -602568 gene 4552 MTRR -602569 gene 6620 SNCB -602570 gene 3714 JAG2 -602571 gene 5936 RBM4 -602572 gene 311 ANXA11 -602573 gene 312 ANXA13 -602574 gene 7007 TECTA -602575 gene 4010 LMX1B -602576 gene 3955 LFNG -602577 gene 4242 MFNG -602578 gene 5986 RFNG -602579 phenotype - - -602580 gene 2801 GOLGA2 -602581 gene 2802 GOLGA3 -602582 gene 1840 DTX1 -602583 gene 2861 GPR37 -602584 gene 5955 RCN2 -602585 moved/removed - - -602586 predominantly phenotypes - - -602587 gene 11332 ACOT7 -602588 phenotype - - -602589 gene 2530 FUT8 -602590 gene 5058 PAK1 -602591 gene 3796 KIF2A -602592 gene 922 CD5L -602593 gene 1041 CDSN -602594 phenotype 6114 RP22 -602595 gene 8487 GEMIN2 -602596 predominantly phenotypes - - -602597 gene 607 BCL9 -602598 gene 27306 HPGDS -602599 moved/removed - - -602600 gene 7804 LRP8 -602601 gene 4973 OLR1 -602602 gene 6398 SECTM1 -602603 gene 4116 MAGOH -602604 moved/removed - - -602605 moved/removed - - -602606 gene 9607 CARTPT -602607 gene 6580 SLC22A1 -602608 gene 6582 SLC22A2 -602609 gene 5289 PIK3C3 -602610 gene 30849 PIK3R4 -602611 predominantly phenotypes - - -602612 predominantly phenotypes - - -602613 predominantly phenotypes - - -602614 gene 6885 MAP3K7 -602615 gene 10454 TAB1 -602616 gene 4247 MGAT2 -602617 gene 2304 FOXE1 -602618 gene 1487 CTBP1 -602619 gene 1488 CTBP2 -602620 gene 5641 LGMN -602621 gene 1525 CXADR -602622 gene 1775 DNASE1L2 -602623 gene 2289 FKBP5 -602624 moved/removed - - -602625 gene 9223 MAGI1 -602626 gene 3556 IL1RAP -602627 gene 990 CDC6 -602628 gene 1112 FOXN3 -602629 phenotype - - -602630 gene 7050 TGIF1 -602631 gene 5002 SLC22A18 -602632 gene 5420 PODXL -602633 gene 2274 FHL2 -602634 gene 4189 DNAJB9 -602635 gene 10522 DEAF1 -602636 gene 5511 PPP1R8 -602637 gene 6694 SPP2 -602638 gene 4173 MCM4 -602639 phenotype 8137 HYD2 -602640 gene 10004 NAALADL1 -602641 gene 1973 EIF4A1 -602642 gene 8600 TNFSF11 -602643 gene 4982 TNFRSF11B -602644 gene 7106 TSPAN4 -602645 gene 10512 SEMA3C -602646 gene 2859 GPR35 -602647 gene 10482 NXF1 -602648 gene 1238 ACKR2 -602649 gene 1153 CIRBP -602650 gene 8405 SPOP -602651 gene 4898 NRD1 -602652 gene 5653 KLK6 -602653 gene 6975 TECTB -602654 gene 10160 FARP1 -602655 gene 22950 SLC4A1AP -602656 gene 4913 NTHL1 -602657 moved/removed - - -602658 gene 5138 PDE2A -602659 gene 4331 MNAT1 -602660 gene 10383 TUBB4B -602661 gene 10381 TUBB3 -602662 gene 10382 TUBB4A -602663 gene 51052 PRLH -602664 gene 837 CASP4 -602665 gene 838 CASP5 -602666 gene 51168 MYO15A -602667 gene 4683 NBN -602668 phenotype - - -602669 gene 5309 PITX3 -602670 gene 5427 POLE2 -602671 gene 2542 SLC37A4 -602672 gene 5872 RAB13 -602673 gene 5655 KLK10 -602674 moved/removed - - -602675 gene 6051 RNPEP -602676 gene 5147 PDE6D -602677 gene 6048 RNF5 -602678 gene 4140 MARK3 -602679 gene 5833 PCYT2 -602680 gene 394 ARHGAP5 -602681 gene 2309 FOXO3 -602682 gene 575 BAI1 -602683 gene 576 BAI2 -602684 gene 577 BAI3 -602685 phenotype 8126 - -602686 gene 8379 MAD1L1 -602687 moved/removed - - -602688 gene 3182 HNRNPAB -602689 gene 6624 FSCN1 -602690 gene 6392 SDHD -602691 gene 8648 NCOA1 -602692 gene 11010 GLIPR1 -602693 gene 4172 MCM3 -602694 gene 4724 NDUFS4 -602695 gene 8742 TNFSF12 -602696 gene 4174 MCM5 -602697 gene 5032 P2RY11 -602698 gene 4775 NFATC3 -602699 gene 4776 NFATC4 -602700 gene 2033 EP300 -602701 gene 7871 SLMAP -602702 gene 10226 PLIN3 -602703 gene 10300 KATNB1 -602704 gene 4194 MDM4 -602705 gene 8224 SYN3 -602706 gene 5700 PSMC1 -602707 gene 5704 PSMC4 -602708 gene 5706 PSMC6 -602709 gene 322 APBB1 -602710 gene 323 APBB2 -602711 gene 10307 APBB3 -602712 gene 321 APBA2 -602713 gene 8754 ADAM9 -602714 gene 8038 ADAM12 -602715 gene 25802 LMOD1 -602716 gene 4868 NPHS1 -602717 gene 2906 GRIN2D -602718 gene 29896 TRA2A -602719 gene 6434 TRA2B -602720 gene 5446 PON3 -602721 gene 11144 DMC1 -602722 phenotype - - -602723 phenotype - - -602724 gene 5413 SEPT5 -602725 gene 7866 IFRD2 -602726 gene 1185 CLCN6 -602727 gene 1186 CLCN7 -602728 gene 51435 SCARA3 -602729 gene 2568 GABRP -602730 gene 93 ACVR2B -602731 gene 2533 FYB -602732 gene 392 ARHGAP1 -602733 gene 223 ALDH9A1 -602734 gene 5357 PLS1 -602735 gene 5954 RCN1 -602736 gene 518 ATP5G3 -602737 gene 6366 CCL21 -602738 gene 3837 KPNB1 -602739 gene 5562 PRKAA1 -602740 gene 5564 PRKAB1 -602741 gene 5565 PRKAB2 -602742 gene 5571 PRKAG1 -602743 gene 51422 PRKAG2 -602744 gene 8443 GNPAT -602745 gene 8395 PIP5K1B -602746 gene 8764 TNFRSF14 -602747 gene 1846 DUSP4 -602748 gene 1848 DUSP6 -602749 gene 1849 DUSP7 -602750 gene 1652 DDT -602751 gene 571 BACH1 -602752 gene 727851 RGPD8 -602753 gene 401 PHOX2A -602754 gene 3783 KCNN4 -602755 gene 9133 CCNB2 -602756 gene 1943 EFNA2 -602757 gene 2051 EPHB6 -602758 gene 5298 PI4KB -602759 phenotype 7834 PCAP -602760 gene 3882 KRT32 -602761 gene 3883 KRT33A -602762 gene 3884 KRT33B -602763 gene 3885 KRT34 -602764 gene 3886 KRT35 -602765 gene 3889 KRT83 -602766 gene 3890 KRT84 -602767 gene 3891 KRT85 -602768 gene 10683 DLL3 -602769 gene 1788 DNMT3A -602770 gene 84733 CBX2 -602771 phenotype - - -602772 phenotype - - -602773 gene 84925 DIRC2 -602774 gene 5889 RAD51C -602775 gene 8036 SHOC2 -602776 gene 5980 REV3L -602777 gene 6621 SNAPC4 -602778 gene 2649 NR6A1 -602779 gene 9002 F2RL3 -602780 gene 348980 HCN1 -602781 gene 610 HCN2 -602782 phenotype - - -602783 gene 6687 SPG7 -602784 gene 1325 CORT -602785 gene 8971 H1FX -602786 gene 3012 HIST1H2AE -602787 gene 8329 HIST1H2AI -602788 gene 8330 HIST1H2AK -602789 moved/removed - - -602790 gene 2275 FHL3 -602791 gene 8331 HIST1H2AJ -602792 gene 3013 HIST1H2AD -602793 gene 8332 HIST1H2AL -602794 gene 8334 HIST1H2AC -602795 gene 8335 HIST1H2AB -602796 gene 8336 HIST1H2AM -602797 gene 8338 HIST2H2AC -602798 gene 8339 HIST1H2BG -602799 gene 3017 HIST1H2BD -602800 gene 8340 HIST1H2BL -602801 gene 8341 HIST1H2BN -602802 gene 8342 HIST1H2BM -602803 gene 3018 HIST1H2BB -602804 gene 8343 HIST1H2BF -602805 gene 8344 HIST1H2BE -602806 gene 8345 HIST1H2BH -602807 gene 8346 HIST1H2BI -602808 gene 8348 HIST1H2BO -602809 gene 3799 KIF5B -602810 gene 8350 HIST1H3A -602811 gene 8351 HIST1H3D -602812 gene 8352 HIST1H3C -602813 gene 8353 HIST1H3E -602814 gene 8354 HIST1H3I -602815 gene 8355 HIST1H3G -602816 gene 8968 HIST1H3F -602817 gene 8356 HIST1H3J -602818 gene 8357 HIST1H3H -602819 gene 8358 HIST1H3B -602820 gene 8290 HIST3H3 -602821 gene 3798 KIF5A -602822 gene 8359 HIST1H4A -602823 gene 8360 HIST1H4D -602824 gene 8361 HIST1H4F -602825 gene 8362 HIST1H4K -602826 gene 8363 HIST1H4J -602827 gene 8364 HIST1H4C -602828 gene 8365 HIST1H4H -602829 gene 8366 HIST1H4B -602830 gene 8367 HIST1H4E -602831 gene 8368 HIST1H4L -602832 gene 8369 HIST1H4G -602833 gene 8294 HIST1H4I -602834 moved/removed - - -602835 gene 2620 GAS2 -602836 gene 5026 P2RX5 -602837 gene 3301 DNAJA1 -602838 gene 5287 PIK3C2B -602839 gene 5293 PIK3CD -602840 gene 970 CD70 -602841 gene 316 AOX1 -602842 gene 51053 GMNN -602843 gene 397 ARHGDIB -602844 gene 398 ARHGDIG -602845 gene 3797 KIF3C -602846 gene 3093 UBE2K -602847 gene 8347 HIST1H2BC -602848 gene 10902 BRD8 -602849 phenotype - - -602850 gene 6047 RNF4 -602851 gene 84059 GPR98 -602852 gene 318 NUDT2 -602853 gene 5801 PTPRR -602854 gene 5682 PSMA1 -602855 gene 5687 PSMA6 -602856 gene 6001 RGS10 -602857 gene 1124 CHN2 -602858 gene 1717 DHCR7 -602859 gene 5192 PEX10 -602860 gene 701 BUB1B -602861 gene 5318 PKP2 -602862 gene 6675 UAP1 -602863 gene 7483 WNT9A -602864 gene 7484 WNT9B -602865 gene 1620 BRINP1 -602866 gene 41 ASIC1 -602867 gene 3490 IGFBP7 -602868 gene 988 CDC5L -602869 gene 3192 HNRNPU -602870 gene 3617 IMPG1 -602871 gene 5493 PPL -602872 gene 1192 CLIC1 -602873 gene 4892 NRAP -602874 gene 7357 UGCG -602875 phenotype - - -602876 gene 100506658 OCLN -602877 gene 5510 PPP1R7 -602878 gene 7781 SLC30A3 -602879 gene 2036 EPB41L1 -602880 gene 2657 GDF1 -602881 gene 5252 PHF1 -602882 gene 3950 LECT2 -602883 gene 6579 SLCO1A2 -602884 gene 2762 GMDS -602885 gene 2862 MLNR -602886 gene 2863 GPR39 -602887 gene 1742 DLG4 -602888 gene 635 BHMT -602889 moved/removed - - -602890 gene 3820 KLRB1 -602891 gene 3822 KLRC2 -602892 gene 3823 KLRC3 -602893 gene 8302 KLRC4 -602894 gene 3824 KLRD1 -602895 gene 6294 SAFB -602896 gene 5601 MAPK9 -602897 gene 5602 MAPK10 -602898 gene 5600 MAPK11 -602899 gene 5603 MAPK13 -602900 gene 1789 DNMT3B -602901 gene 3842 TNPO1 -602902 gene 687 KLF9 -602903 gene 688 KLF5 -602904 gene 5597 MAPK6 -602905 gene 3787 KCNS1 -602906 gene 3788 KCNS2 -602907 gene 1070 CETN3 -602908 gene 10741 RBBP9 -602909 gene 1364 CLDN4 -602910 gene 1365 CLDN3 -602911 gene 10369 CACNG2 -602912 gene 3692 EIF6 -602913 gene 1263 PLK3 -602914 gene 366 AQP9 -602915 gene 7485 WRB -602916 gene 7324 UBE2E1 -602917 gene 1827 RCAN1 -602918 gene 2193 FARSA -602919 gene 1796 DOK1 -602920 gene 3927 LASP1 -602921 gene 5623 PSPN -602922 moved/removed - - -602923 gene 5928 RBBP4 -602924 gene 390 RND3 -602925 gene 5291 PIK3CB -602926 gene 6812 STXBP1 -602927 gene 2842 GPR19 -602928 gene 29767 TMOD2 -602929 gene 4013 VWA5A -602930 gene 57109 REXO4 -602931 gene 4091 SMAD6 -602932 gene 4092 SMAD7 -602933 gene 7205 TRIP6 -602934 gene 6388 SDF2 -602935 gene 2166 FAAH -602936 moved/removed - - -602937 gene 10370 CITED2 -602938 gene 570 BAAT -602939 gene 2307 FOXS1 -602940 gene 65108 MARCKSL1 -602941 gene 9564 BCAR1 -602942 gene 7813 EVI5 -602943 gene 6097 RORC -602944 gene 1876 E2F6 -602945 gene 10474 TADA3 -602946 gene 10629 TAF6L -602947 gene 8464 SUPT3H -602948 gene 5890 RAD51B -602949 gene 10284 SAP18 -602950 gene 3276 PRMT1 -602951 gene 7539 ZFP37 -602952 gene 7468 WHSC1 -602953 gene 23462 HEY1 -602954 gene 5892 RAD51D -602955 gene 6878 TAF6 -602956 gene 2189 FANCG -602957 gene 6367 CCL22 -602958 gene 6446 SGK1 -602959 gene 1917 EEF1A2 -602960 moved/removed - - -602961 gene 7321 UBE2D1 -602962 gene 7322 UBE2D2 -602963 gene 7323 UBE2D3 -602964 gene 7257 TSNAX -602965 gene 2173 FABP7 -602966 phenotype 4964 OFC2 -602967 gene 7764 ZNF217 -602968 gene 8537 BCAS1 -602969 gene 2104 ESRRG -602970 gene 3840 KPNA4 -602971 gene 6903 TBCC -602972 gene 5151 PDE8A -602973 gene 5152 PDE9A -602974 gene 364 AQP7 -602975 moved/removed - - -602976 gene 6945 MLX -602977 gene 2813 GP2 -602978 gene 1911 PHC1 -602979 gene 1912 PHC2 -602980 gene 6733 SRPK2 -602981 gene 165 AEBP1 -602982 gene 3780 KCNN1 -602983 gene 3782 KCNN3 -602984 gene 10001 MED6 -602985 gene 4720 NDUFS2 -602986 gene 1819 DRG2 -602987 gene 5137 PDE1C -602988 gene 5099 PCDH7 -602989 gene 1196 CLK2 -602990 gene 1198 CLK3 -602991 gene 9241 NOG -602992 gene 3903 LAIR1 -602993 gene 3904 LAIR2 -602994 predominantly phenotypes - - -602995 gene 7335 UBE2V1 -602996 gene 8870 IER3 -602997 gene 8029 CUBN -602998 gene 6623 SNCG -602999 gene 5507 PPP1R3C -603000 gene 3396 ICT1 -603001 gene 7336 UBE2V2 -603002 gene 30000 TNPO2 -603003 phenotype - - -603004 gene 2631 GBAS -603005 gene 9060 PAPSS2 -603006 gene 1002 CDH4 -603007 gene 1004 CDH6 -603008 gene 1006 CDH8 -603009 gene 8291 DYSF -603010 phenotype 1709 DFNB17 -603011 gene 8293 SERF1A -603012 gene 3304 HSPA1B -603013 phenotype 8400 SCZD6 -603014 gene 5609 MAP2K7 -603015 gene 8295 TRRAP -603016 gene 28513 CDH19 -603017 gene 1015 CDH17 -603018 gene 8707 B3GALT2 -603019 gene 1016 CDH18 -603020 gene 172 AFG3L1P -603021 gene 6183 MRPS12 -603022 gene 1877 E4F1 -603023 gene 10320 IKZF1 -603024 gene 8289 ARID1A -603025 gene 8301 PICALM -603026 gene 5324 PLAG1 -603027 gene 8789 FBP2 -603028 gene 7097 TLR2 -603029 gene 7098 TLR3 -603030 gene/phenotype 7099 TLR4 -603031 gene 7100 TLR5 -603032 gene 8303 SNN -603033 gene 8292 COLQ -603034 phenotype - - -603035 gene 3603 IL16 -603036 moved/removed - - -603037 gene 10637 LEFTY1 -603038 gene 6676 SPAG4 -603039 gene 4335 MNT -603040 phenotype 50970 - -603041 phenotype - - -603042 gene 6613 SUMO2 -603043 gene 8439 NSMAF -603044 gene 5325 PLAGL1 -603045 moved/removed - - -603046 gene 11236 RNF139 -603047 phenotype - - -603048 gene 8733 GPAA1 -603049 gene 9352 TXNL1 -603050 gene 10006 ABI1 -603051 gene 8540 AGPS -603052 gene 10898 CPSF4 -603053 gene 8520 HAT1 -603054 gene 26585 GREM1 -603055 gene 22938 SNW1 -603056 gene 5000 ORC4 -603057 gene 8642 DCHS1 -603058 gene 8641 PCDHGB4 -603059 gene 26025 PCDHGA12 -603060 gene 10749 KIF1C -603061 gene 2029 ENSA -603062 gene 10618 TGOLN2 -603063 gene 622 BDH1 -603064 gene 10720 UGT2B11 -603065 gene 8856 NR1I2 -603066 gene 8985 PLOD3 -603067 moved/removed - - -603068 gene 1844 DUSP2 -603069 gene 1847 DUSP5 -603070 gene 10635 RAD51AP1 -603071 gene 2840 GPR17 -603072 gene 6790 AURKA -603073 gene 7546 ZIC2 -603074 gene 5050 PAFAH1B3 -603075 phenotype - - -603076 gene 9619 ABCG1 -603077 moved/removed - - -603078 gene 1111 CHEK1 -603079 gene 8535 CBX4 -603080 gene 6539 SLC6A12 -603081 gene 141 ADPRH -603082 moved/removed - - -603083 gene 3191 HNRNPL -603084 gene 1615 DARS -603085 gene 1317 SLC31A1 -603086 gene 419 ART3 -603087 moved/removed - - -603088 gene 1318 SLC31A2 -603089 gene 8314 BAP1 -603090 gene 7347 UCHL3 -603091 gene 9959 USP12P1 -603092 gene 8446 DUSP11 -603093 gene 8708 B3GALT1 -603094 gene 8706 B3GALNT1 -603095 gene 8705 B3GALT4 -603096 moved/removed - - -603097 gene 528 ATP6V1C1 -603098 phenotype 1705 DFNB13 -603099 gene 10554 AGPAT1 -603100 gene 10555 AGPAT2 -603101 gene 1361 CPB2 -603102 gene 1362 CPD -603103 gene 1369 CPN1 -603104 gene 1370 CPN2 -603105 gene 8532 CPZ -603106 gene 4826 NNAT -603107 gene 6942 TCF20 -603108 gene 22919 MAPRE1 -603109 gene 4088 SMAD3 -603110 gene 4090 SMAD5 -603111 gene 6605 SMARCE1 -603112 gene 6283 S100A12 -603113 gene 5519 PPP2R1B -603114 gene 6282 S100A11 -603115 gene 1660 DHX9 -603116 phenotype 574043 - -603117 predominantly phenotypes - - -603118 gene 1014 CDH16 -603119 predominantly phenotypes - - -603120 gene 5768 QSOX1 -603121 moved/removed - - -603122 gene 1794 DOCK2 -603123 gene 1795 DOCK3 -603124 gene 7327 UBE2G2 -603125 gene 8460 TPST1 -603126 gene 8459 TPST2 -603127 gene 8522 GAS7 -603128 gene 6492 SIM1 -603129 gene 8543 LMO4 -603130 gene 8455 ATRN -603131 gene 9512 PMPCB -603132 gene 7743 ZNF189 -603133 predominantly phenotypes - - -603134 gene 8454 CUL1 -603135 gene 8453 CUL2 -603136 gene 8452 CUL3 -603137 gene 8451 CUL4A -603138 moved/removed - - -603139 gene 5884 RAD17 -603140 gene 5305 PIP4K2A -603141 gene 8496 PPFIBP1 -603142 gene 8495 PPFIBP2 -603143 gene 8499 PPFIA2 -603144 gene 8541 PPFIA3 -603145 gene 8497 PPFIA4 -603146 gene 5715 PSMD9 -603147 phenotype - - -603148 gene 467 ATF3 -603149 gene 3605 IL17A -603150 gene 513 ATP5D -603151 gene 989 SEPT7 -603152 gene 522 ATP5J -603153 gene 5810 RAD1 -603154 gene 5411 PNN -603155 gene 5784 PTPN14 -603156 gene 670 BPHL -603157 gene 5296 PIK3R2 -603158 gene 9101 USP8 -603159 gene 4037 LRP3 -603160 gene 955 ENTPD6 -603161 gene 956 ENTPD3 -603162 gene 957 ENTPD5 -603163 gene 11341 SCRG1 -603164 gene 8504 PEX3 -603165 phenotype 64069 - -603166 gene 5871 MAP4K2 -603167 gene 572 BAD -603168 gene 8408 ULK1 -603169 gene 1522 CTSZ -603170 gene 7005 TEAD3 -603171 gene 4738 NEDD8 -603172 gene 9039 UBA3 -603173 gene 9040 UBE2M -603174 predominantly phenotypes - - -603175 phenotype - - -603176 phenotype 8401 SCZD7 -603177 gene 8673 VAMP8 -603178 gene 4329 ALDH6A1 -603179 gene 768 CA9 -603180 gene 11260 XPOT -603181 gene 3608 ILF2 -603182 gene 3609 ILF3 -603183 gene 6253 RTN2 -603184 gene 1024 CDK8 -603185 gene 4678 NASP -603186 gene 1616 DAXX -603187 gene 1068 CETN1 -603188 phenotype 56694 - -603189 gene 6811 STX5 -603190 gene 10196 PRMT3 -603191 gene 755 C21orf2 -603192 gene 516 ATP5G1 -603193 gene 517 ATP5G2 -603194 phenotype - - -603195 gene 2854 GPR32 -603196 gene 1690 COCH -603197 gene 10908 PNPLA6 -603198 gene 284119 PTRF -603199 gene 10207 INADL -603200 gene 8625 RFXANK -603201 gene 8647 ABCB11 -603202 gene 3938 LCT -603203 gene 901 CCNG2 -603204 phenotype 50971 - -603205 gene 27136 MORC1 -603206 phenotype 8806 SCZD8 -603207 gene 10490 VTI1B -603208 gene 3769 KCNJ13 -603209 predominantly phenotypes 8418 CMAHP -603210 gene 8629 JRK -603211 gene 8690 JRKL -603212 gene 8419 BFSP2 -603213 gene 3835 KIF22 -603214 gene 5826 ABCD4 -603215 gene 8775 NAPA -603216 gene 8774 NAPG -603217 gene 8417 STX7 -603218 phenotype - - -603219 gene 3776 KCNK2 -603220 gene 3777 KCNK3 -603221 phenotype 8782 MYP3 -603222 gene 23642 SNHG1 -603223 gene 9304 SNORD22 -603224 gene 9303 SNORD25 -603225 gene 9302 SNORD26 -603226 gene 9301 SNORD27 -603227 gene 9300 SNORD28 -603228 gene 9297 SNORD29 -603229 gene 9299 SNORD30 -603230 gene 9298 SNORD31 -603231 gene 7752 ZNF200 -603232 gene 4992 OR1F1 -603233 phenotype - - -603234 gene 368 ABCC6 -603235 gene 6415 SEPW1 -603236 gene 4597 MVD -603237 gene 2037 EPB41L2 -603238 gene 8420 SNHG3 -603239 gene 6081 SNORA73B -603240 gene 5003 SLC22A18AS -603241 gene 4045 LSAMP -603242 gene 9976 CLEC2B -603243 gene 267 AMFR -603244 gene 9957 HS3ST1 -603245 gene 26257 NKX2-8 -603246 gene 2975 GTF3C1 -603247 gene 11001 SLC27A2 -603248 gene 658 BMPR1B -603249 gene 8508 NIPSNAP1 -603250 gene 2295 FOXF2 -603251 gene 1025 CDK9 -603252 gene 2300 FOXL1 -603253 gene 8530 CST7 -603254 gene 6597 SMARCA4 -603255 gene 4799 NFX1 -603256 gene 9208 LRRFIP1 -603257 gene 6596 HLTF -603258 gene 3551 IKBKB -603259 moved/removed - - -603260 gene 56033 BARX1 -603261 gene 8396 PIP4K2B -603262 gene 9061 PAPSS1 -603263 gene 771 CA12 -603264 gene 9028 RHBDL1 -603265 gene 1820 ARID3A -603266 phenotype 8691 IDDM17 -603267 gene 6650 CAPN15 -603268 gene 8509 NDST2 -603269 gene 10929 SRSF8 -603270 gene 515 ATP5F1 -603271 gene 11099 PTPN21 -603272 gene 10256 CNKSR1 -603273 gene 8626 TP63 -603274 moved/removed - - -603275 gene 8394 PIP5K1A -603276 gene 8490 RGS5 -603277 gene 1108 CHD4 -603278 phenotype - - -603279 gene 9030 ERDA1 -603280 moved/removed - - -603281 gene 8638 OASL -603282 predominantly phenotypes 7754 ZNF204P -603283 gene 10345 TRDN -603284 phenotype - - -603285 phenotype - - -603286 gene 3814 KISS1 -603287 gene 55163 PNPO -603288 gene 11081 KERA -603289 gene 1613 DAPK3 -603290 gene 22941 SHANK2 -603291 gene 662 BNIP1 -603292 gene 663 BNIP2 -603293 gene 664 BNIP3 -603294 gene 8888 MCM3AP -603295 gene 4093 SMAD9 -603296 gene 8649 LAMTOR3 -603297 gene 79659 DYNC2H1 -603298 gene 9374 PPT2 -603299 moved/removed - - -603300 gene 7127 TNFAIP2 -603301 gene 8462 KLF11 -603302 gene 115 ADCY9 -603303 gene 8658 TNKS -603304 gene 3656 IRAK2 -603305 gene 3756 KCNH1 -603306 gene 6943 TCF21 -603307 gene 631 BFSP1 -603308 gene 1515 CTSV -603309 gene 8621 CDK13 -603310 gene 8654 PDE5A -603311 gene 8317 CDC7 -603312 gene 8424 BBOX1 -603313 gene 84920 ALG10 -603314 gene 10998 SLC27A5 -603315 gene 23413 NCS1 -603316 gene 55907 CMAS -603317 gene 374462 PTPRQ -603318 moved/removed - - -603319 gene 8416 ANXA9 -603320 gene 8511 MMP23A -603321 gene 8510 MMP23B -603322 gene 4712 NDUFB6 -603323 predominantly phenotypes - - -603324 gene/phenotype 2707 GJB3 -603325 gene 84687 PPP1R9B -603326 gene 5509 PPP1R3D -603327 gene 8498 RANBP3 -603328 gene 4440 MSI1 -603329 gene 8544 PIR -603330 gene 1770 DNAH9 -603331 gene 1781 DYNC1I2 -603332 gene 25981 DNAH1 -603333 gene 146754 DNAH2 -603334 gene 55567 DNAH3 -603335 gene 1767 DNAH5 -603336 gene 1768 DNAH6 -603337 gene 1769 DNAH8 -603338 moved/removed - - -603339 gene 8701 DNAH11 -603340 gene 201625 DNAH12 -603341 gene 127602 DNAH14 -603342 phenotype 6378 SCZD2 -603343 gene 8480 RAE1 -603344 gene 8615 USO1 -603345 gene 8671 SLC4A4 -603346 gene 4861 NPAS1 -603347 gene 4862 NPAS2 -603348 gene 3091 HIF1A -603349 gene 2034 EPAS1 -603350 gene 4939 OAS2 -603351 gene 4940 OAS3 -603352 gene 332 BIRC5 -603353 gene 9497 SLC4A7 -603354 gene 2636 GBX1 -603355 gene 8720 MBTPS1 -603356 gene 8763 CD164 -603357 gene 8710 SERPINB7 -603358 phenotype - - -603359 gene 4702 NDUFA8 -603360 gene 9409 PEX16 -603361 gene 8771 TNFRSF6B -603362 gene 6457 SH3GL3 -603363 gene 8545 CGGBP1 -603364 gene 6428 SRSF3 -603365 gene 8479 HIRIP3 -603366 gene 8718 TNFRSF25 -603367 moved/removed - - -603368 gene 1021 CDK6 -603369 gene 1031 CDKN2C -603370 gene 7358 UGDH -603371 gene 2733 GLE1 -603372 gene/phenotype 7253 TSHR -603373 phenotype - - -603374 moved/removed - - -603375 gene 8467 SMARCA5 -603376 predominantly phenotypes - - -603377 gene 6584 SLC22A5 -603378 gene 8819 SAP30 -603379 gene 8826 IQGAP1 -603380 gene 8825 LIN7A -603381 gene 2317 FLNB -603382 gene 4439 MSH5 -603383 phenotype - - -603384 gene 8831 SYNGAP1 -603385 gene 8883 NAE1 -603386 phenotype 50975 - -603387 phenotype - - -603388 phenotype 50976 - -603389 predominantly phenotypes - - -603390 gene 8622 PDE8B -603391 moved/removed - - -603392 gene 638 BIK -603393 predominantly phenotypes - - -603394 predominantly phenotypes - - -603395 gene 6674 SPAG1 -603396 predominantly phenotypes - - -603397 gene 8427 ZNF282 -603398 gene 8840 WISP1 -603399 gene 8839 WISP2 -603400 gene 8838 WISP3 -603401 gene 8546 AP3B1 -603402 gene 8310 ACOX3 -603403 gene 1665 DHX15 -603404 gene 169841 ZNF169 -603405 gene 8449 DHX16 -603406 gene 8805 TRIM24 -603407 gene 8761 PABPC4 -603408 gene 8321 FZD1 -603409 gene 8323 FZD6 -603410 gene 8324 FZD7 -603411 gene - - -603412 gene 8476 CDC42BPA -603413 gene 7073 TIAL1 -603414 gene 7108 TM7SF2 -603415 gene 6335 SCN9A -603416 predominantly phenotypes - - -603417 gene 5877 RABIF -603418 gene 8574 AKR7A2 -603419 gene 6449 SGTA -603420 gene 813 CALU -603421 gene 8577 TMEFF1 -603422 gene 8572 PDLIM4 -603423 gene 639 PRDM1 -603424 gene 8575 PRKRA -603425 gene 400 ARL1 -603426 gene 8864 PER2 -603427 gene 8863 PER3 -603428 gene 7756 ZNF207 -603429 gene 23 ABCF1 -603430 gene 7753 ZNF202 -603431 gene 7458 EIF4H -603432 gene 7461 CLIP2 -603433 gene 7702 ZNF143 -603434 gene 8682 PEA15 -603435 gene 2880 GPX5 -603436 gene 7755 ZNF205 -603437 gene 8531 YBX3 -603438 predominantly phenotypes - - -603439 predominantly phenotypes - - -603440 gene 5128 CDK17 -603441 gene 8814 CDKL1 -603442 gene 8999 CDKL2 -603443 gene 6293 VPS52 -603444 gene 8880 FUBP1 -603445 gene 8570 KHSRP -603446 predominantly phenotypes - - -603447 gene 8739 HRK -603448 gene 1600 DAB1 -603449 gene 8607 RUVBL1 -603450 gene 9079 LDB2 -603451 gene 8861 LDB1 -603452 moved/removed - - -603453 gene 8737 RIPK1 -603454 gene 8738 CRADD -603455 gene 8767 RIPK2 -603456 gene 1802 DPH2 -603457 predominantly phenotypes - - -603458 gene 1995 ELAVL3 -603459 moved/removed - - -603460 gene 8851 CDK5R1 -603461 gene 8881 CDC16 -603462 gene 8697 CDC23 -603463 predominantly phenotypes - - -603464 gene 8558 CDK10 -603465 gene 8318 CDC45 -603466 gene 1994 ELAVL1 -603467 phenotype - - -603468 moved/removed - - -603469 moved/removed - - -603470 gene 445 ASS1 -603471 phenotype - - -603472 predominantly phenotypes - - -603473 gene 9113 LATS1 -603474 gene 6223 RPS19 -603475 gene 8646 CHRD -603476 gene 1389 CREBL2 -603477 gene 8896 BUD31 -603478 gene 7398 USP1 -603479 gene 1842 ECM2 -603480 moved/removed - - -603481 gene 5719 PSMD13 -603482 gene 8945 BTRC -603483 gene 8637 EIF4EBP3 -603484 gene 9055 PRC1 -603485 gene 9054 NFS1 -603486 gene 7375 USP4 -603487 gene 8735 MYH13 -603488 gene 14 AAMP -603489 gene 8483 CILP -603490 gene 54361 WNT4 -603491 gene 3321 IGSF3 -603492 gene 6504 SLAMF1 -603493 gene 8645 KCNK5 -603494 gene 8725 URI1 -603495 gene 6795 AURKC -603496 gene 8445 DYRK2 -603497 gene 8444 DYRK3 -603498 gene 6610 SMPD2 -603499 gene 8792 TNFRSF11A -603500 gene 8717 TRADD -603501 gene 8505 PARG -603502 gene 3475 IFRD1 -603503 gene 8813 DPM1 -603504 gene 8556 CDC14A -603505 gene 8555 CDC14B -603506 gene 4041 LRP5 -603507 gene 4040 LRP6 -603508 gene 8736 MYOM1 -603509 gene 9172 MYOM2 -603510 moved/removed - - -603511 phenotype - - -603512 gene 8732 RNGTT -603513 phenotype - - -603514 gene 8731 RNMT -603515 gene 1444 CSHL1 -603516 phenotype - - -603517 gene 8915 BCL10 -603518 gene 7072 TIA1 -603519 gene 10285 SMNDC1 -603520 gene 6629 SNRPB2 -603521 gene 6627 SNRPA1 -603522 gene 6631 SNRPC -603523 predominantly phenotypes - - -603524 gene 1102 RCBTB2 -603525 gene 9111 NMI -603526 gene 9112 MTA1 -603527 gene 1801 DPH1 -603528 moved/removed - - -603529 predominantly phenotypes - - -603530 predominantly phenotypes - - -603531 gene 1174 AP1S1 -603532 moved/removed - - -603533 gene 164 AP1G1 -603534 gene 8906 AP1G2 -603535 gene 8907 AP1M1 -603536 gene 8939 FUBP3 -603537 gene 9132 KCNQ4 -603538 gene 8564 KMO -603539 gene 8722 CTSF -603540 gene 2550 GABBR1 -603541 gene 6636 SNRPF -603542 gene 6637 SNRPG -603543 phenotype - - -603544 gene 8812 CCNK -603545 moved/removed - - -603546 phenotype - - -603547 gene 8932 MBD2 -603548 gene 1040 CDS1 -603549 gene 8760 CDS2 -603550 gene 2070 EYA4 -603551 gene 8692 HYAL2 -603552 phenotype - - -603553 phenotype - - -603554 phenotype - - -603555 gene 6827 SUPT4H1 -603556 moved/removed - - -603557 gene 8898 MTMR2 -603558 gene 8897 MTMR3 -603559 gene 9110 MTMR4 -603560 gene 6305 SBF1 -603561 gene 9107 MTMR6 -603562 gene 9108 MTMR7 -603563 phenotype - - -603564 gene 8818 DPM2 -603565 gene 8693 GALNT4 -603566 gene 8554 PIAS1 -603567 gene 9063 PIAS2 -603568 gene 8944 SNORD73A -603569 predominantly phenotypes - - -603570 gene/phenotype 8876 VNN1 -603571 gene 8875 VNN2 -603572 predominantly phenotypes - - -603573 gene 53615 MBD3 -603574 gene 8930 MBD4 -603575 gene 8382 NME5 -603576 gene 4308 TRPM1 -603577 gene 8715 NOL4 -603578 gene 5016 OVGP1 -603579 gene 8780 RIOK3 -603580 gene 5100 PCDH8 -603581 gene 5101 PCDH9 -603582 gene 8940 TOP3B -603583 gene 1740 DLG2 -603584 gene 8567 MADD -603585 phenotype - - -603586 moved/removed - - -603587 predominantly phenotypes - - -603588 predominantly phenotypes - - -603589 predominantly phenotypes - - -603590 gene 9215 LARGE -603591 gene 8975 USP13 -603592 predominantly phenotypes - - -603593 gene 9056 SLC7A7 -603594 gene 7292 TNFSF4 -603595 predominantly phenotypes - - -603596 phenotype - - -603597 gene 8651 SOCS1 -603598 gene 8743 TNFSF10 -603599 gene 8837 CFLAR -603600 predominantly phenotypes - - -603601 gene 5286 PIK3C2A -603602 gene 8605 PLA2G4C -603603 gene 8399 PLA2G10 -603604 gene 8398 PLA2G6 -603605 gene 9255 AIMP1 -603606 gene 8986 RPS6KA4 -603607 gene 9252 RPS6KA5 -603608 gene 874 CBR3 -603609 gene 8790 FPGT -603610 gene 8633 UNC5C -603611 gene 8797 TNFRSF10A -603612 gene 8795 TNFRSF10B -603613 gene 8794 TNFRSF10C -603614 gene 8793 TNFRSF10D -603615 gene 8438 RAD54L -603616 gene 9135 RABEP1 -603617 gene 9187 SLC24A1 -603618 gene 991 CDC20 -603619 gene 51343 FZR1 -603620 gene 11168 PSIP1 -603621 gene 8928 FOXH1 -603622 phenotype - - -603623 gene 8565 YARS -603624 gene 6187 RPS2 -603625 gene 4062 LY6H -603626 gene 5097 PCDH1 -603627 gene 5098 PCDHGC3 -603628 gene 9242 MSC -603629 phenotype - - -603630 gene 6193 RPS5 -603631 gene 6203 RPS9 -603632 gene 6204 RPS10 -603633 gene 6235 RPS29 -603634 gene 6125 RPL5 -603635 gene 6083 SNORD21 -603636 gene 6144 RPL21 -603637 gene 6157 RPL27A -603638 gene 6158 RPL28 -603639 gene 6868 ADAM17 -603640 gene 8728 ADAM19 -603641 predominantly phenotypes - - -603642 predominantly phenotypes - - -603643 predominantly phenotypes - - -603644 gene 6341 SCO1 -603645 gene 5188 PET112 -603646 gene 1355 COX15 -603647 gene 617 BCS1L -603648 gene 1353 COX11 -603649 phenotype - - -603650 gene 129880 BBS5 -603651 gene 7223 TRPC4 -603652 gene 7225 TRPC6 -603653 moved/removed - - -603654 gene 9194 SLC16A7 -603655 moved/removed - - -603656 predominantly phenotypes - - -603657 gene 9341 VAMP3 -603658 gene 6201 RPS7 -603659 gene 9340 GLP2R -603660 gene 6206 RPS12 -603661 gene 6139 RPL17 -603662 gene 9349 RPL23 -603663 phenotype 10386 - -603664 predominantly phenotypes 50979 - -603665 gene 8614 STC2 -603666 gene 8675 STX16 -603667 gene 8604 SLC25A12 -603668 gene 9169 SCAF11 -603669 predominantly phenotypes - - -603670 predominantly phenotypes - - -603671 phenotype - - -603672 gene 9139 CBFA2T2 -603673 gene 8643 PTCH2 -603674 gene 6210 RPS15A -603675 gene 6217 RPS16 -603676 moved/removed - - -603677 gene - - -603678 phenotype 1706 DFNB14 -603679 gene 7334 UBE2N -603680 gene 6315 ATXN8OS -603681 gene 9381 OTOF -603682 gene 6224 RPS20 -603683 gene 6228 RPS23 -603684 gene 9388 LIPG -603685 gene 6234 RPS28 -603686 gene 6133 RPL9 -603687 gene 8854 ALDH1A2 -603688 phenotype - - -603689 phenotype - - -603690 gene 9197 SLC33A1 -603691 gene 8811 GALR2 -603692 gene 8484 GALR3 -603693 gene 23414 ZFPM2 -603694 phenotype 50982 - -603695 gene 2974 GUCY1B2 -603696 gene 5414 SEPT4 -603697 gene 247 ALOX15B -603698 gene 8729 GBF1 -603699 gene 7481 WNT11 -603700 gene 241 ALOX5AP -603701 gene 6231 RPS26 -603702 gene 6232 RPS27 -603703 gene 6128 RPL6 -603704 gene 6154 RPL26 -603705 gene 51378 ANGPT4 -603706 gene 10505 SEMA4F -603707 gene 4337 MOCS1 -603708 gene 4338 MOCS2 -603709 gene 53616 ADAM22 -603710 gene 8745 ADAM23 -603711 gene 9420 CYP7B1 -603712 gene 8748 ADAM20 -603713 gene 8747 ADAM21 -603714 gene 6496 SIX3 -603715 gene 8521 GCM1 -603716 gene 9247 GCM2 -603717 gene 533 ATP6V0B -603718 gene 9076 CLDN1 -603719 gene 9184 BUB3 -603720 phenotype - - -603721 gene 7332 UBE2L3 -603722 gene 8518 IKBKAP -603723 moved/removed - - -603724 moved/removed - - -603725 gene 8822 FGF17 -603726 gene 8817 FGF18 -603727 gene 5859 QARS -603728 gene 8650 NUMB -603729 gene 8879 SGPL1 -603730 gene 8877 SPHK1 -603731 gene 9337 CNOT8 -603732 gene 1408 CRY2 -603733 gene 8501 SLC43A1 -603734 gene 3661 IRF3 -603735 gene 8639 AOC3 -603736 phenotype - - -603737 predominantly phenotypes - - -603738 gene 652963 BTF3P12 -603739 gene 132556 BTF3P13 -603740 predominantly phenotypes - - -603741 gene 242 ALOX12B -603742 gene 6585 SLIT1 -603743 gene 8542 APOL1 -603744 predominantly phenotypes - - -603745 gene 6586 SLIT3 -603746 gene 9353 SLIT2 -603747 gene 7165 TPD52L2 -603748 moved/removed - - -603749 gene 7226 TRPM2 -603750 gene 343 AQP8 -603751 gene 8698 S1PR4 -603752 gene 6545 SLC7A4 -603753 gene 9354 UBE4A -603754 gene 9371 KIF3B -603755 gene 9372 ZFYVE9 -603756 gene 9429 ABCG2 -603757 gene 6362 CCL18 -603758 gene 2954 GSTZ1 -603759 gene 9355 LHX2 -603760 gene 3364 HUS1 -603761 gene 5883 RAD9A -603762 gene 5636 PRPSAP2 -603763 gene 3833 KIFC1 -603764 gene 8941 CDK5R2 -603765 gene 8677 STX10 -603766 gene 4528 MTIF2 -603767 gene 9622 KLK4 -603768 gene 4660 PPP1R12B -603769 gene 9623 TCL1B -603770 gene 5495 PPM1B -603771 gene 5514 PPP1R10 -603772 gene 1780 DYNC1I1 -603773 gene 9377 COX5A -603774 gene 1350 COX7C -603775 gene 9134 CCNE2 -603776 phenotype - - -603777 gene 9350 CER1 -603778 gene 9425 CDYL -603779 gene 9627 SNCAIP -603780 gene 9401 RECQL4 -603781 gene 9400 RECQL5 -603782 gene 9560 CCL4L1 -603783 phenotype 100462721 - -603784 gene 754 PTTG1IP -603785 gene 8777 MPDZ -603786 phenotype - - -603787 gene 3754 KCNF1 -603788 gene 3755 KCNG1 -603789 moved/removed - - -603790 gene 9963 SLC23A1 -603791 gene 9962 SLC23A2 -603792 moved/removed - - -603793 moved/removed - - -603794 predominantly phenotypes - - -603795 gene 9516 LITAF -603796 gene 9992 KCNE2 -603797 gene 8534 CHST1 -603798 gene 9435 CHST2 -603799 gene 9469 CHST3 -603800 gene 9412 MED21 -603801 gene 9397 NMT2 -603802 phenotype - - -603803 gene 1602 DACH1 -603804 gene 9148 NEURL1 -603805 gene 9333 TGM5 -603806 predominantly phenotypes - - -603807 moved/removed - - -603808 gene 9969 MED13 -603809 gene 9967 THRAP3 -603810 gene 9440 MED17 -603811 gene 8815 BANF1 -603812 gene 8816 DCAF5 -603813 phenotype - - -603814 gene 9978 RBX1 -603815 gene 3834 KIF25 -603816 gene 8312 AXIN1 -603817 gene 8853 ASAP2 -603818 gene 9542 NRG2 -603819 gene 10011 SRA1 -603820 gene 2864 FFAR1 -603821 gene 2865 FFAR3 -603822 gene 2866 GPR42 -603823 gene 2867 FFAR2 -603824 gene 10020 GNE -603825 gene 3090 HIC1 -603826 gene 9971 NR1H4 -603827 gene 10018 BCL2L11 -603828 predominantly phenotypes - - -603829 phenotype - - -603830 phenotype - - -603831 gene 5174 PDZK1 -603832 gene 4696 NDUFA3 -603833 gene 4697 NDUFA4 -603834 gene 4704 NDUFA9 -603835 gene 4705 NDUFA10 -603836 gene 4706 NDUFAB1 -603837 gene 4707 NDUFB1 -603838 gene 4708 NDUFB2 -603839 gene 4709 NDUFB3 -603840 gene 4710 NDUFB4 -603841 gene 4711 NDUFB5 -603842 gene 4713 NDUFB7 -603843 gene 4716 NDUFB10 -603844 gene 4717 NDUFC1 -603845 gene 4718 NDUFC2 -603846 gene 4722 NDUFS3 -603847 gene 4725 NDUFS5 -603848 gene 4726 NDUFS6 -603849 gene 7101 NR2E1 -603850 gene 10059 DNM1L -603851 gene 8929 PHOX2B -603852 gene 10078 TSSC4 -603853 gene 10077 TSPAN32 -603854 gene 10048 RANBP9 -603855 phenotype 10167 CFM1 -603856 gene 7681 MKRN3 -603857 gene 10108 MKRN3-AS1 -603858 moved/removed - - -603859 gene 10165 SLC25A13 -603860 phenotype - - -603861 gene 10166 SLC25A15 -603862 gene 905 CCNT2 -603863 gene 9616 RNF7 -603864 gene 9973 CCS -603865 gene 9945 GFPT2 -603866 gene 8800 PEX11A -603867 gene 8799 PEX11B -603868 gene 5873 RAB27A -603869 gene 5874 RAB27B -603870 gene 863 CBFA2T3 -603871 gene 705 BYSL -603872 gene 10024 TROAP -603873 gene 9373 PLAA -603874 gene 9068 ANGPTL1 -603875 gene 944 TNFSF8 -603876 gene 9507 ADAMTS4 -603877 gene 9123 SLC16A3 -603878 gene 9122 SLC16A4 -603879 gene 9121 SLC16A5 -603880 gene 9120 SLC16A6 -603881 gene 9970 NR1I3 -603882 gene 9532 BAG2 -603883 gene 9531 BAG3 -603884 gene 9530 BAG4 -603885 gene 9529 BAG5 -603886 gene 9048 ARTN -603887 gene 8914 TIMELESS -603888 gene 3790 KCNS3 -603889 gene 10326 SIRPB1 -603890 gene 9246 UBE2L6 -603891 gene 9965 FGF19 -603892 gene 9343 EFTUD2 -603893 gene 10010 TANK -603894 gene 9628 RGS6 -603895 gene 8786 RGS11 -603896 phenotype - - -603897 gene 8785 MATN4 -603898 gene 8995 TNFSF18 -603899 gene 7639 ZNF85 -603900 gene 7727 ZNF174 -603901 gene 8882 ZPR1 -603902 phenotype - - -603903 phenotype - - -603904 gene 9445 ITM2B -603905 gene 8784 TNFRSF18 -603906 gene 1179 CLCA1 -603907 gene 1965 EIF2S1 -603908 gene 8894 EIF2S2 -603909 phenotype - - -603910 gene 8669 EIF3J -603911 gene 8668 EIF3I -603912 gene 8667 EIF3H -603913 gene 8666 EIF3G -603914 gene 8665 EIF3F -603915 gene 8664 EIF3D -603916 gene 8663 EIF3C -603917 gene 8662 EIF3B -603918 phenotype 117191 - -603919 gene 6793 STK10 -603920 gene 9946 CRYZL1 -603921 gene 8803 SUCLA2 -603922 gene 8801 SUCLG2 -603923 moved/removed - - -603924 gene 3026 HABP2 -603925 gene 9145 SYNGR1 -603926 gene 9144 SYNGR2 -603927 gene 9143 SYNGR3 -603928 gene 1975 EIF4B -603929 gene 8672 EIF4G3 -603930 gene 10243 GPHN -603931 gene 8992 ATP6V0E1 -603932 phenotype - - -603933 phenotype - - -603934 gene 10498 CARM1 -603935 phenotype 10547 PSORS4 -603936 gene 10220 GDF11 -603937 gene 6101 RP1 -603938 moved/removed - - -603939 gene 9424 KCNK6 -603940 gene 10089 KCNK7 -603941 gene 10560 SLC19A2 -603942 gene 2992 GYG1 -603943 gene 1036 CDO1 -603944 gene 10228 STX6 -603945 gene 8893 EIF2B5 -603946 gene 3070 HELLS -603947 gene 9219 MTA2 -603948 gene 9972 NUP153 -603949 gene 8934 RAB7L1 -603950 gene 9348 NDST3 -603951 gene 3779 KCNMB1 -603952 gene 4733 DRG1 -603953 gene 3770 KCNJ14 -603954 gene 9183 ZW10 -603955 gene 2327 FMO2 -603956 phenotype - - -603957 gene 2330 FMO5 -603958 gene 5992 RFX4 -603959 gene 10686 CLDN16 -603960 gene 881 CCIN -603961 gene 10371 SEMA3A -603962 gene 10125 RASGRP1 -603963 gene 3680 ITGA9 -603964 phenotype 1694 DFNA16 -603965 phenotype - - -603966 gene 8644 AKR1C3 -603967 gene 6329 SCN4A -603968 gene 5429 POLH -603969 gene 10673 TNFSF13B -603970 gene 10687 PNMA2 -603971 gene 7644 ZNF91 -603972 gene 7594 ZNF43 -603973 gene 7643 ZNF90 -603974 gene 168374 ZNF92 -603975 gene 81931 ZNF93 -603976 gene - - -603977 gene 7757 ZNF208 -603978 gene 9753 ZSCAN12 -603979 gene - - -603980 gene 148198 ZNF98 -603981 gene 7652 ZNF99 -603982 gene 163227 ZNF100 -603983 gene 94039 ZNF101 -603984 gene 100129842 ZNF737 -603985 gene - - -603986 moved/removed - - -603987 gene - - -603988 gene - - -603989 gene 51427 ZNF107 -603990 moved/removed - - -603991 gene - - -603992 gene - - -603993 gene - - -603994 gene 7771 ZNF112 -603995 gene - - -603996 gene 163071 ZNF114 -603997 gene - - -603998 gene - - -603999 gene - - -604000 gene - - -604001 gene 10142 AKAP9 -604002 gene 9475 ROCK2 -604003 gene 9635 CLCA2 -604004 phenotype - - -604005 moved/removed - - -604006 moved/removed - - -604007 moved/removed - - -604008 gene 5804 PTPRZ2 -604009 gene 8938 BAIAP3 -604010 gene 9240 PNMA1 -604011 gene/phenotype 9094 UNC119 -604012 gene 6082 SNORD20 -604013 gene 8704 B4GALT2 -604014 gene 8703 B4GALT3 -604015 gene 8702 B4GALT4 -604016 gene 9334 B4GALT5 -604017 gene 9331 B4GALT6 -604018 gene 9253 NUMBL -604019 gene 3268 AGFG2 -604020 gene 8927 BSN -604021 moved/removed - - -604022 moved/removed - - -604023 moved/removed - - -604024 gene 8884 SLC5A6 -604025 gene 8313 AXIN2 -604026 gene 9527 GOSR1 -604027 gene 9570 GOSR2 -604028 gene 9117 SEC22C -604029 gene 9554 SEC22B -604030 gene 5695 PSMB7 -604031 gene 6319 SCD -604032 gene 9451 EIF2AK3 -604033 gene 2081 ERN1 -604034 gene 10595 ERN2 -604035 gene 1539 CYLC2 -604036 gene 8900 CCNA1 -604037 gene 5878 RAB5C -604038 gene 8372 HYAL3 -604039 gene 10724 MGEA5 -604040 gene 10111 RAD50 -604041 gene 9526 MPDU1 -604042 gene 8515 ITGA10 -604043 gene 4751 NEK2 -604044 gene 4752 NEK3 -604045 gene 10419 PRMT5 -604046 gene 9943 OXSR1 -604047 gene 9390 SLC22A13 -604048 gene 9389 SLC22A14 -604049 gene 9942 XYLB -604050 gene 9940 DLEC1 -604051 gene 9941 EXOG -604052 gene 9966 TNFSF15 -604053 gene 10380 BPNT1 -604054 gene 30 ACAA1 -604055 gene 3422 IDI1 -604056 gene 9956 HS3ST2 -604057 gene 9955 HS3ST3A1 -604058 gene 9953 HS3ST3B1 -604059 gene 9951 HS3ST4 -604060 phenotype 1713 DFNB20 -604061 gene 10801 SEPT9 -604062 gene 10025 MED16 -604063 gene 8516 ITGA8 -604064 gene 468 ATF4 -604065 gene 8913 CACNA1G -604066 gene 10317 B3GALT5 -604067 gene 8787 RGS9 -604068 gene 7163 TPD52 -604069 gene 7164 TPD52L1 -604070 gene 1607 DGKB -604071 gene 160851 DGKH -604072 gene 9162 DGKI -604073 gene 7690 ZNF131 -604074 gene 7691 ZNF132 -604075 gene 7692 ZNF133 -604076 gene 7693 ZNF134 -604077 gene 7694 ZNF135 -604078 gene 7695 ZNF136 -604079 gene 7696 ZNF137P -604080 gene 7697 ZNF138 -604081 moved/removed - - -604082 gene 7699 ZNF140 -604083 gene 7701 ZNF142 -604084 gene 7709 ZBTB17 -604085 gene 7710 ZNF154 -604086 gene 7711 ZNF155 -604087 gene 10858 CYP46A1 -604088 gene 10842 PPP1R17 -604089 gene 10870 HCST -604090 gene 9231 DLG5 -604091 phenotype - - -604092 gene 7272 TTK -604093 predominantly phenotypes - - -604094 gene 10459 MAD2L2 -604095 gene 10913 EDAR -604096 gene 2916 GRM6 -604097 gene 10911 UTS2 -604098 gene 10910 SUGT1 -604099 gene 2912 GRM2 -604100 gene 2914 GRM4 -604101 gene 2917 GRM7 -604102 gene 2915 GRM5 -604103 gene 9499 MYOT -604104 gene 9535 GMFG -604105 gene 10388 SYCP2 -604106 gene 9293 GPR52 -604107 gene 9290 GPR55 -604108 gene 9053 MAP7 -604109 gene 10086 HHLA1 -604110 gene 9289 GPR56 -604111 gene 9196 KCNAB3 -604112 gene 8796 SCEL -604113 gene 10068 IL18BP -604114 gene 5330 PLCB2 -604115 gene 10984 KCNQ1OT1 -604116 phenotype - - -604117 phenotype - - -604118 gene 8437 RASAL1 -604119 gene 6560 SLC12A4 -604120 moved/removed - - -604121 phenotype - - -604122 gene 9488 PIGB -604123 gene 246243 RNASEH1 -604124 gene 5932 RBBP8 -604125 gene 6820 SULT2B1 -604126 gene 6840 SVIL -604127 gene 6913 TBX15 -604128 gene 6920 TCEA3 -604129 phenotype - - -604130 gene 8433 UTF1 -604131 phenotype - - -604132 moved/removed - - -604133 moved/removed - - -604134 gene 11093 ADAMTS13 -604135 gene 9603 NFE2L3 -604136 gene 11009 IL24 -604137 moved/removed - - -604138 gene 9052 GPRC5A -604139 gene 3300 DNAJB2 -604140 gene 11083 DIDO1 -604141 gene 10565 ARFGEF1 -604142 gene 7305 TYROBP -604143 gene 9700 ESPL1 -604144 gene 11136 SLC7A9 -604145 phenotype - - -604146 gene 9066 SYT7 -604147 gene 9232 PTTG1 -604148 gene 9058 SLC13A2 -604149 gene 8910 SGCE -604150 gene 5439 POLR2J -604151 gene 10477 UBE2E3 -604152 gene 4947 OAZ2 -604153 gene 10316 NMUR1 -604154 predominantly phenotypes - - -604155 gene 10314 LANCL1 -604156 gene 6422 SFRP1 -604157 gene 6423 SFRP2 -604158 gene 6425 SFRP5 -604159 gene 9152 SLC6A5 -604160 gene 3696 ITGB8 -604161 gene 84634 KISS1R -604162 moved/removed - - -604163 gene 6122 RPL3 -604164 gene 3175 ONECUT1 -604165 gene 8402 SLC25A11 -604166 gene 6129 RPL7 -604167 gene 10664 CTCF -604168 phenotype - - -604169 phenotype - - -604170 gene 5359 PLSCR1 -604171 gene 10189 ALYREF -604172 predominantly phenotypes - - -604173 phenotype - - -604174 gene 6138 RPL15 -604175 gene 6135 RPL11 -604176 gene 9021 SOCS3 -604177 gene 6132 RPL8 -604178 gene 6142 RPL18A -604179 gene 6141 RPL18 -604180 gene 6152 RPL24 -604181 gene 6167 RPL37 -604182 gene 6169 RPL38 -604183 predominantly phenotypes - - -604184 gene 9543 IGDCC3 -604185 phenotype 22811 MBS3 -604186 gene 9547 CXCL14 -604187 phenotype - - -604188 gene 8991 SELENBP1 -604189 gene 3338 DNAJC4 -604190 gene 6583 SLC22A4 -604191 gene 10127 ZNF263 -604192 moved/removed - - -604193 gene 11000 SLC27A3 -604194 gene 10999 SLC27A4 -604195 moved/removed - - -604196 gene 28965 SLC27A6 -604197 gene 10588 MTHFS -604198 gene 9230 RAB11B -604199 gene 11021 RAB35 -604200 gene 8778 SIGLEC5 -604201 phenotype 53366 - -604202 gene 9342 SNAP29 -604203 gene 9482 STX8 -604204 gene 55014 STX17 -604205 gene 8904 CPNE1 -604206 gene 221184 CPNE2 -604207 gene 8895 CPNE3 -604208 gene 131034 CPNE4 -604209 gene 57699 CPNE5 -604210 gene 23418 CRB1 -604211 predominantly phenotypes - - -604212 gene 5073 PARN -604213 phenotype - - -604214 gene 889 KRIT1 -604215 gene 3622 ING2 -604216 gene 10050 SLC17A4 -604217 gene 10568 SLC34A2 -604218 phenotype - - -604219 phenotype - - -604220 gene 10552 ARPC1A -604221 gene 10097 ACTR2 -604222 gene 10096 ACTR3 -604223 gene 10095 ARPC1B -604224 gene 10109 ARPC2 -604225 gene 10094 ARPC3 -604226 gene 10093 ARPC4 -604227 gene 10092 ARPC5 -604228 moved/removed - - -604229 phenotype - - -604230 gene 23536 ADAT1 -604231 gene 10744 PTTG2 -604232 phenotype - - -604233 phenotype - - -604234 gene 9358 ITGBL1 -604235 gene 23428 SLC7A8 -604236 moved/removed - - -604237 gene 9244 CRLF1 -604238 gene 6615 SNAI1 -604239 gene 8781 PSPHP1 -604240 gene 3196 TLX2 -604241 gene 23607 CD2AP -604242 gene 6049 RNF6 -604243 moved/removed - - -604244 moved/removed - - -604245 moved/removed - - -604246 moved/removed - - -604247 moved/removed - - -604248 moved/removed - - -604249 gene 10313 RTN3 -604250 phenotype - - -604251 gene 23523 CABIN1 -604252 gene 23621 BACE1 -604253 gene 1456 CSNK1G3 -604254 phenotype 11192 DYX3 -604255 gene 10660 LBX1 -604256 gene 8553 BHLHE40 -604257 predominantly phenotypes - - -604258 gene 10395 DLC1 -604259 gene 10154 PLXNC1 -604260 gene 6777 STAT5B -604261 gene 9474 ATG5 -604262 gene 9546 APBA3 -604263 gene 23627 PRND -604264 gene 1951 CELSR3 -604265 gene 1952 CELSR2 -604266 gene 1953 MEGF6 -604267 gene 1954 MEGF8 -604268 gene 1955 MEGF9 -604269 gene 2196 FAT2 -604270 gene 4038 LRP4 -604271 phenotype - - -604272 gene 9997 SCO2 -604273 phenotype - - -604274 gene 10748 KLRAP1 -604275 gene 1501 CTNND2 -604276 gene 8502 PKP4 -604277 gene 6683 SPAST -604278 phenotype - - -604279 gene 133746 JMY -604280 gene 91584 PLXNA4 -604281 gene 10926 DBF4 -604282 gene 23129 PLXND1 -604283 gene 10216 PRG4 -604284 moved/removed - - -604285 gene 189 AGXT -604286 phenotype - - -604287 predominantly phenotypes - - -604288 phenotype 23459 CMD1H -604289 gene 25788 RAD54B -604290 phenotype - - -604291 predominantly phenotypes - - -604292 phenotype - - -604293 gene 23654 PLXNB2 -604294 gene 11023 VAX1 -604295 gene 25806 VAX2 -604296 gene 9380 GRHPR -604297 gene 8867 SYNJ1 -604298 gene 26228 STAP1 -604299 gene 26060 APPL1 -604300 gene 26061 HACL1 -604301 gene 10896 OCLM -604302 phenotype - - -604303 gene 10881 ACTL7A -604304 gene 10880 ACTL7B -604305 gene 3119 HLA-DQB1 -604306 gene 23017 FAIM2 -604307 phenotype - - -604308 phenotype - - -604309 gene 26266 SLC13A4 -604310 gene 26258 BLOC1S6 -604311 gene 5469 MED1 -604312 gene 1471 CST3 -604313 gene 2584 GALK1 -604314 phenotype - - -604315 predominantly phenotypes - - -604316 phenotype 63870 PSORS5 -604317 phenotype - - -604318 gene 9569 GTF2IRD1 -604319 gene 26277 TINF2 -604320 phenotype - - -604321 phenotype - - -604322 gene 26503 SLC17A5 -604323 gene 8714 ABCC3 -604324 predominantly phenotypes - - -604325 gene 5521 PPP2R2B -604326 phenotype - - -604327 gene 11285 B4GALT7 -604328 gene 6749 SSRP1 -604329 phenotype 50986 - -604330 gene 10750 GRAP -604331 gene 26512 INTS6 -604332 gene 26511 CHIC2 -604333 gene 9391 CIAO1 -604334 gene 9098 USP6 -604335 predominantly phenotypes - - -604336 gene 7179 TPTE -604337 gene 9629 CLCA3P -604338 moved/removed - - -604339 moved/removed - - -604340 moved/removed - - -604341 moved/removed - - -604342 moved/removed - - -604343 moved/removed - - -604344 gene 4121 MAN1A1 -604345 gene 10905 MAN1A2 -604346 gene 11253 MAN1B1 -604347 gene 9406 ZRANB2 -604348 phenotype - - -604349 gene 10319 LAMC3 -604350 gene 9545 RAB3D -604351 gene 5253 PHF2 -604352 phenotype - - -604353 gene 26973 CHORDC1 -604354 gene 26747 NUFIP1 -604355 gene 26958 COPG2 -604356 phenotype - - -604357 gene 10586 MAB21L2 -604358 gene 10274 STAG1 -604359 moved/removed - - -604360 phenotype - - -604361 moved/removed - - -604362 gene 4008 LMO7 -604363 predominantly phenotypes - - -604364 phenotype - - -604365 gene 8842 PROM1 -604366 gene 27019 DNAI1 -604367 phenotype - - -604368 gene 10457 GPNMB -604369 phenotype - - -604370 phenotype - - -604371 gene 11148 HHLA2 -604372 gene 11147 HHLA3 -604373 gene/phenotype 11200 CHEK2 -604374 gene 9633 MTL5 -604375 gene 9146 HGS -604376 gene 9019 MPZL1 -604377 phenotype - - -604378 gene 8678 BECN1 -604379 phenotype - - -604380 predominantly phenotypes - - -604381 predominantly phenotypes - - -604382 predominantly phenotypes - - -604383 gene 8328 GFI1B -604384 gene 27032 ATP2C1 -604385 gene 11280 SCN11A -604386 gene 7227 TRPS1 -604387 phenotype - - -604388 gene 2786 GNG4 -604389 gene 2790 GNG10 -604390 gene 2791 GNG11 -604391 phenotype - - -604392 gene 23746 AIPL1 -604393 phenotype - - -604394 gene 2768 GNA12 -604395 gene 27030 MLH3 -604396 gene 9869 SETDB1 -604397 gene 9630 GNA14 -604398 gene 4246 SCGB2A1 -604399 gene 84152 PPP1R1B -604400 phenotype - - -604401 phenotype 27038 - -604402 gene 8869 ST3GAL5 -604403 phenotype - - -604404 gene 10082 GPC6 -604405 gene 946 SIGLEC6 -604406 gene 10672 GNA13 -604407 gene 3954 LETM1 -604408 moved/removed - - -604409 gene 10691 GMEB1 -604410 gene 27036 SIGLEC7 -604411 gene 3619 INCENP -604412 gene 27004 TCL6 -604413 moved/removed - - -604414 gene 5435 POLR2F -604415 gene 26872 STEAP1 -604416 phenotype - - -604417 gene 27125 AFF4 -604418 gene 10804 GJB6 -604419 gene 10721 POLQ -604420 gene 3087 HHEX -604421 gene 5082 PDCL -604422 gene 5407 PNLIPRP1 -604423 gene 5408 PNLIPRP2 -604424 gene 10114 HIPK3 -604425 gene 431707 LHX8 -604426 gene 8529 CYP4F2 -604427 gene 6336 SCN10A -604428 gene 5638 PRRG1 -604429 gene 5639 PRRG2 -604430 gene 2788 GNG7 -604431 phenotype - - -604432 phenotype - - -604433 gene 10008 KCNE3 -604434 gene 11012 KLK11 -604435 moved/removed - - -604436 gene 11212 PROSC -604437 gene 10991 SLC38A3 -604438 gene 5650 KLK7 -604439 gene 2549 GAB1 -604440 gene 1149 CIDEA -604441 gene 27141 CIDEB -604442 moved/removed - - -604443 gene 23305 ACSL6 -604444 gene 25805 BAMBI -604445 gene 5275 SERPINB13 -604446 gene 9317 PTER -604447 gene 10681 GNB5 -604448 gene 9595 CYTIP -604449 gene 5717 PSMD11 -604450 gene 5718 PSMD12 -604451 predominantly phenotypes - - -604452 gene 5711 PSMD5 -604453 gene 2494 NR5A2 -604454 phenotype - - -604455 gene 1757 SARDH -604456 gene 8519 IFITM1 -604457 gene 3431 SP110 -604458 moved/removed - - -604459 gene 11213 IRAK3 -604460 gene 11124 FAF1 -604461 gene 3259 HPV6AI1 -604462 predominantly phenotypes 54910 SEMA4C -604463 gene 11126 CD160 -604464 gene 50618 ITSN2 -604465 gene 6456 SH3GL2 -604466 gene 4234 METTL1 -604467 gene 23531 MMD -604468 gene 9064 MAP3K6 -604469 gene 10640 EXOC5 -604470 gene 10421 CD2BP2 -604471 gene 6512 SLC1A7 -604472 gene 8741 TNFSF13 -604473 gene 2911 GRM1 -604474 predominantly phenotypes - - -604475 gene 57142 RTN4 -604476 moved/removed - - -604477 gene 11335 CBX3 -604478 gene 23468 CBX5 -604479 gene 23411 SIRT1 -604480 gene 22933 SIRT2 -604481 gene 23410 SIRT3 -604482 gene 23409 SIRT4 -604483 gene 23408 SIRT5 -604484 phenotype - - -604485 gene 10002 NR2E3 -604486 gene 10105 PPIF -604487 gene 340990 OTOG -604488 gene 8557 TCAP -604489 gene 23600 AMACR -604490 gene 26278 SACS -604491 gene 868 CBLB -604492 gene 7416 VDAC1 -604493 gene 2709 GJB5 -604494 gene 8809 IL18R1 -604495 gene 4793 NFKBIB -604496 gene 28512 NKIRAS1 -604497 gene 28511 NKIRAS2 -604498 phenotype - - -604499 phenotype 28515 - -604500 gene 9326 ZNHIT3 -604501 gene 9325 TRIP4 -604502 gene 9324 HMGN3 -604503 gene 221037 JMJD1C -604504 gene 9322 TRIP10 -604505 gene 9321 TRIP11 -604506 gene 9320 TRIP12 -604507 gene 9319 TRIP13 -604508 gene 9318 COPS2 -604509 gene 8807 IL18RAP -604510 gene 23553 HYAL4 -604511 gene 10951 CBX1 -604512 gene 8808 IL1RL2 -604513 gene 8832 CD84 -604514 gene 9047 SH2D2A -604515 gene 29760 BLNK -604516 gene 9398 CD101 -604517 gene 10891 PPARGC1A -604518 gene 9402 GRAP2 -604519 phenotype 30829 IBD3 -604520 gene 8740 TNFSF14 -604521 gene 23498 HAAO -604522 gene 1668 DEFA3 -604523 gene 9620 CELSR1 -604524 gene 4065 LY75 -604525 gene 11255 HRH3 -604526 gene 3420 IDH3B -604527 gene 23416 KCNH3 -604528 gene 23415 KCNH4 -604529 gene 23440 OTP -604530 gene 9437 NCR1 -604531 gene 9436 NCR2 -604532 gene 9033 PKD2L1 -604533 gene 3669 ISG20 -604534 gene 9308 CD83 -604535 gene 3801 KIFC3 -604536 phenotype - - -604537 phenotype - - -604538 gene 11004 KIF2C -604539 gene 9509 ADAMTS2 -604540 gene 8689 KRT36 -604541 gene 8688 KRT37 -604542 gene 8687 KRT38 -604543 gene 8994 LIMD1 -604544 gene 23395 LARS2 -604545 gene 3841 KPNA5 -604546 gene 4796 TONSL -604547 phenotype 100917 - -604548 gene 4794 NFKBIE -604549 moved/removed - - -604550 gene 8562 DENR -604551 gene 9023 CH25H -604552 gene 3083 HGFAC -604553 gene 3281 HSBP1 -604554 gene 11077 HSF2BP -604555 gene 1008 CDH10 -604556 gene 9149 DYRK1B -604557 gene 23090 ZNF423 -604558 gene 29851 ICOS -604559 phenotype - - -604560 moved/removed - - -604561 gene 11282 MGAT4B -604562 gene 22985 ACIN1 -604563 phenotype - - -604564 gene 4259 MGST3 -604565 gene 29880 ALG5 -604566 gene 29929 ALG6 -604567 gene 8448 DOC2A -604568 gene 8447 DOC2B -604569 gene 26047 CNTNAP2 -604570 gene 57619 SHROOM3 -604571 phenotype - - -604572 gene 3337 DNAJB1 -604573 gene 9556 C14orf2 -604574 gene 23732 FRRS1L -604575 gene 741 ZNHIT2 -604576 gene 11161 C14orf1 -604577 gene 11149 BVES -604578 gene 9447 AIM2 -604579 gene 8322 FZD4 -604580 gene 10516 FBLN5 -604581 gene 10939 AFG3L2 -604582 gene 11217 AKAP2 -604583 gene 9141 PDCD5 -604584 gene 5157 PDGFRL -604585 gene 6672 SP100 -604586 gene 134957 STXBP5 -604587 gene 10241 CALCOCO2 -604588 gene 4750 NEK1 -604589 gene 23774 BRD1 -604590 gene 2213 FCGR2B -604591 gene 5037 PEBP1 -604592 gene 10312 TCIRG1 -604593 gene 3800 KIF5C -604594 gene 9419 CRIPT -604595 phenotype 54501 - -604596 gene 374286 CDRT1 -604597 gene 23426 GRIP1 -604598 gene 734 OSGIN2 -604599 gene 10919 EHMT2 -604600 gene 29850 TRPM5 -604601 gene 9617 MTRF1 -604602 gene 92399 MRRF -604603 gene 26509 MYOF -604604 gene 10463 SLC30A9 -604605 gene 8997 KALRN -604606 gene 29989 OBP2B -604607 gene 10481 HOXB13 -604608 moved/removed - - -604609 gene 10071 MUC12 -604610 gene 641 BLM -604611 gene 7486 WRN -604612 gene 4821 NKX2-2 -604613 gene 9096 TBX18 -604614 gene 9095 TBX19 -604615 gene 8320 EOMES -604616 gene 10716 TBR1 -604617 gene 10825 NEU3 -604618 gene 4817 NIT1 -604619 gene 9211 LGI1 -604620 gene 8477 GPR65 -604621 gene 4248 MGAT3 -604622 moved/removed - - -604623 gene 11320 MGAT4A -604624 gene 8988 HSPB3 -604625 phenotype - - -604626 gene 10873 ME3 -604627 gene 27190 IL17B -604628 gene 27189 IL17C -604629 gene 9313 MMP20 -604630 gene 8431 NR0B2 -604631 gene 10493 VAT1 -604632 gene 55697 VAC14 -604633 gene 30008 EFEMP2 -604634 gene 8407 TAGLN2 -604635 gene 11249 NXPH2 -604636 gene 11248 NXPH3 -604637 gene 11247 NXPH4 -604638 gene 81 ACTN4 -604639 gene 30010 NXPH1 -604640 gene 30012 TLX3 -604641 gene 9479 MAPK8IP1 -604642 gene 56934 CA10 -604643 gene 8620 NPFF -604644 gene 770 CA11 -604645 gene 27115 PDE7B -604646 gene 10762 NUP50 -604647 gene 50632 CALY -604648 gene 347853 TBX10 -604649 gene 6904 TBCD -604650 gene 3437 IFIT3 -604651 gene 151449 GDF7 -604652 gene 83439 TCF7L1 -604653 gene 30061 SLC40A1 -604654 gene 9177 HTR3B -604655 gene 9020 MAP3K14 -604656 gene 752 FMNL1 -604657 gene 9032 TM4SF5 -604658 gene 7107 GPR137B -604659 gene 30816 ERVW-1 -604660 gene 30820 KCNIP1 -604661 gene 30819 KCNIP2 -604662 gene 30818 KCNIP3 -604663 gene 7475 WNT6 -604664 gene 10437 IFI30 -604665 gene 8533 COPS3 -604666 gene 9448 MAP4K4 -604667 gene 8618 CADPS -604668 gene 9422 ZNF264 -604669 gene 27039 PKD2L2 -604670 gene 10343 PKDREJ -604671 gene 10899 JTB -604672 gene 30835 CD209 -604673 gene 10335 MRVI1 -604674 gene 23493 HEY2 -604675 gene 51450 PRRX2 -604676 gene 10866 HCP5 -604677 gene 10087 COL4A3BP -604678 gene 9375 TM9SF2 -604679 gene 26986 PABPC1 -604680 gene 5042 PABPC3 -604681 gene 341315 PABPC1P4 -604682 gene 3682 ITGAE -604683 gene 11127 KIF3A -604684 gene 10962 MLLT11 -604685 gene 3199 HOXA2 -604686 gene 11214 AKAP13 -604687 gene 5729 PTGDR -604688 gene 9495 AKAP5 -604689 gene 10566 AKAP3 -604690 predominantly phenotypes - - -604691 gene 9472 AKAP6 -604692 gene 10270 AKAP8 -604693 gene 9465 AKAP7 -604694 gene 11216 AKAP10 -604695 gene 403 ARL3 -604696 gene 11215 AKAP11 -604697 gene 10344 CCL26 -604698 gene 9590 AKAP12 -604699 gene 10139 ARFRP1 -604700 gene 10043 TOM1 -604701 gene 10040 TOM1L1 -604702 gene 10042 HMGXB4 -604703 moved/removed - - -604704 gene 8412 BCAR3 -604705 gene 10461 MERTK -604706 moved/removed - - -604707 gene 57016 AKR1B10 -604708 gene 10725 NFAT5 -604709 gene 26230 TIAM2 -604710 gene 8425 LTBP4 -604711 gene 5412 UBL3 -604712 gene 50484 RRM2B -604713 gene 6320 CLEC11A -604714 gene 7259 TSPYL1 -604715 phenotype - - -604716 gene 10941 UGT2A1 -604717 phenotype - - -604718 gene 8458 TTF2 -604719 gene 8576 STK16 -604720 gene 7036 TFR2 -604721 gene 10045 SH2D3A -604722 gene 10044 SH2D3C -604723 gene 10102 TSFM -604724 gene 10855 HPSE -604725 gene 9099 USP2 -604726 gene 9263 STK17A -604727 gene 9262 STK17B -604728 gene 9960 USP3 -604729 gene 27005 USP21 -604730 gene 7289 TULP3 -604731 gene 9958 USP15 -604732 gene 22797 TFEC -604733 gene 10352 WARS2 -604734 gene 9948 WDR1 -604735 gene 10600 USP16 -604736 gene 29761 USP25 -604737 gene 10885 WDR3 -604738 gene 10803 CCR9 -604739 gene 9584 RBM39 -604740 gene 27173 SLC39A1 -604741 gene 6718 AKR1D1 -604742 gene 9201 DCLK1 -604743 gene 23576 DDAH1 -604744 gene 23564 DDAH2 -604745 gene 10732 TCFL5 -604746 gene 10420 TESK2 -604747 gene 8403 SOX14 -604748 gene 9580 SOX13 -604749 gene 9310 ZNF235 -604750 gene 10780 ZNF234 -604751 gene 10781 ZNF266 -604752 gene 10308 ZNF267 -604753 gene 10795 ZNF268 -604754 gene 10778 ZNF271 -604755 gene 10794 ZNF460 -604756 gene 10793 ZNF273 -604757 phenotype - - -604758 gene 5971 RELB -604759 gene 50511 SYCP3 -604760 gene 7776 ZNF236 -604761 gene 7763 ZFAND5 -604762 gene 23075 SWAP70 -604763 gene 23365 ARHGEF12 -604764 gene 11244 ZHX1 -604765 phenotype - - -604766 gene 7827 NPHS2 -604767 gene 50514 DEC1 -604768 gene 9534 ZNF254 -604769 gene 10935 PRDX3 -604770 gene 10449 ACAA2 -604771 predominantly phenotypes - - -604772 phenotype - - -604773 gene 27034 ACAD8 -604774 gene 27329 ANGPTL3 -604775 gene 8989 TRPA1 -604776 gene 3127 HLA-DRB5 -604777 phenotype - - -604778 gene 11086 ADAM29 -604779 gene 11085 ADAM30 -604780 gene 51099 ABHD5 -604781 moved/removed - - -604782 gene 9070 ASH2L -604783 gene 1209 CLPTM1 -604784 gene 6919 TCEA2 -604785 gene 8727 CTNNAL1 -604786 gene 10124 ARL4A -604787 gene 10123 ARL4C -604788 gene 10856 RUVBL2 -604789 gene 22801 ITGA11 -604790 gene 50840 TAS2R14 -604791 gene 50839 TAS2R10 -604792 gene 50838 TAS2R13 -604793 gene 50837 TAS2R7 -604794 gene 50836 TAS2R8 -604795 gene 50835 TAS2R9 -604796 gene 50834 TAS2R1 -604797 gene 10930 APOBEC2 -604798 gene 9456 HOMER1 -604799 gene 9455 HOMER2 -604800 gene 9454 HOMER3 -604801 phenotype 53368 - -604802 phenotype 53369 - -604803 gene 9980 DOPEY2 -604804 phenotype - - -604805 phenotype - - -604806 gene 23769 FLRT1 -604807 gene 23768 FLRT2 -604808 gene 23767 FLRT3 -604809 phenotype - - -604810 gene 11024 LILRA1 -604811 gene 10859 LILRB1 -604812 gene 11027 LILRA2 -604813 gene 10063 COX17 -604814 gene 10990 LILRB5 -604815 gene 10288 LILRB2 -604816 moved/removed - - -604817 gene 23563 CHST5 -604818 gene 11026 LILRA3 -604819 gene 22827 PUF60 -604820 gene 11025 LILRB3 -604821 gene 11006 LILRB4 -604822 gene 11131 CAPN11 -604823 gene 8538 BARX2 -604824 gene/phenotype 9365 KL -604825 gene 9638 FEZ1 -604826 gene 9637 FEZ2 -604827 phenotype 50715 EJM2 -604828 gene 6846 XCL2 -604829 gene 10281 DSCR4 -604830 predominantly phenotypes - - -604831 gene 2121 EVC -604832 gene 23632 CA14 -604833 gene 10850 CCL27 -604834 gene 29110 TBK1 -604835 gene 11266 DUSP12 -604836 gene 1233 CCR4 -604837 gene 11251 PTGDR2 -604838 gene 11250 GPR45 -604839 gene 8468 FKBP6 -604840 gene 23770 FKBP8 -604841 phenotype - - -604842 gene 6581 SLC22A3 -604843 gene 10599 SLCO1B1 -604844 gene 9653 HS2ST1 -604845 gene 50652 PCA3 -604846 gene 9394 HS6ST1 -604847 gene 2849 GPR26 -604848 moved/removed - - -604849 gene 9287 TAAR2 -604850 gene 10987 COPS5 -604851 gene 2926 GRSF1 -604852 gene 6373 CXCL11 -604853 gene 10573 MRPL28 -604854 gene 11185 INMT -604855 predominantly phenotypes - - -604856 predominantly phenotypes - - -604857 gene 6729 SRP54 -604858 gene 6730 SRP68 -604859 gene 29995 LMCD1 -604860 gene 10892 MALT1 -604861 gene 26524 LATS2 -604862 gene 50489 CD207 -604863 gene 9227 LRAT -604864 phenotype - - -604865 gene 8609 KLF7 -604866 gene 5326 PLAGL2 -604867 gene/phenotype 50833 TAS2R16 -604868 gene 50831 TAS2R3 -604869 gene 50832 TAS2R4 -604870 gene 8685 MARCO -604871 gene 10893 MMP24 -604872 gene 9159 PCSK7 -604873 gene 10205 MPZL2 -604874 gene 10219 KLRG1 -604875 gene 4649 MYO9A -604876 gene 10231 RCAN2 -604877 gene 23764 MAFF -604878 gene 9990 SLC12A6 -604879 gene 10723 SLC12A7 -604880 moved/removed - - -604881 gene 9501 RPH3AL -604882 gene 50674 NEUROG3 -604883 gene 2976 GTF3C2 -604884 gene 10783 NEK6 -604885 gene 10514 MYBBP1A -604886 gene 10328 EMC8 -604887 gene 10797 MTHFD2 -604888 gene 9330 GTF3C3 -604889 gene 26960 NBEA -604890 gene 9328 GTF3C5 -604891 gene 10787 NCKAP1 -604892 gene 9329 GTF3C4 -604893 gene 100271873 AIRN -604894 gene 9480 ONECUT2 -604895 gene 30009 TBX21 -604896 gene 8195 MKKS -604897 gene 5201 PFDN1 -604898 gene 5203 PFDN4 -604899 gene 5204 PFDN5 -604900 gene 8694 DGAT1 -604901 phenotype - - -604902 gene 2972 BRF1 -604903 gene 9015 TAF1A -604904 gene 9014 TAF1B -604905 gene 9013 TAF1C -604906 phenotype - - -604907 gene 23495 TNFRSF13B -604908 gene 9989 PPP4R1 -604909 gene 4848 CNOT2 -604910 gene 4849 CNOT3 -604911 gene 4850 CNOT4 -604912 gene 6873 TAF2 -604913 gene 29883 CNOT7 -604914 gene 23210 JMJD6 -604915 gene 9175 MAP3K13 -604916 predominantly phenotypes - - -604917 gene 23019 CNOT1 -604918 gene 27445 PCLO -604919 predominantly phenotypes - - -604920 moved/removed - - -604921 gene 8491 MAP4K3 -604922 predominantly phenotypes - - -604923 gene 11183 MAP4K5 -604924 gene 51808 PHAX -604925 gene 10567 RABAC1 -604926 gene 9468 PCYT1B -604927 gene 9150 CTDP1 -604928 phenotype - - -604929 moved/removed - - -604930 gene 8440 NCK2 -604931 phenotype - - -604932 gene 11142 PKIG -604933 gene 4595 MUTYH -604934 gene 6905 TBCE -604935 gene 10655 DMRT2 -604936 gene 3802 KIR2DL1 -604937 gene 3803 KIR2DL2 -604938 gene 3804 KIR2DL3 -604939 gene 22925 PLA2R1 -604940 moved/removed - - -604941 gene 5520 PPP2R2A -604942 gene 9751 SNPH -604943 gene 375611 SLC26A5 -604944 gene 5523 PPP2R3A -604945 gene 3805 KIR2DL4 -604946 gene 3811 KIR3DL1 -604947 gene 3812 KIR3DL2 -604948 gene 4616 GADD45B -604949 gene 10912 GADD45G -604950 gene 10745 PHTF1 -604951 gene 25796 PGLS -604952 gene 3806 KIR2DS1 -604953 gene 100132285 KIR2DS2 -604954 gene 3808 KIR2DS3 -604955 gene 3809 KIR2DS4 -604956 gene 3810 KIR2DS5 -604957 moved/removed - - -604958 gene 86 ACTL6A -604959 gene 5366 PMAIP1 -604960 gene 11252 PACSIN2 -604961 gene 50940 PDE11A -604962 gene 50852 TRAT1 -604963 gene 8993 PGLYRP1 -604964 gene 27240 SIT1 -604965 gene 6789 STK4 -604966 phenotype - - -604967 phenotype - - -604968 phenotype - - -604969 gene 8631 SKAP1 -604970 gene 9212 AURKB -604971 gene 4188 MDFI -604972 gene 23595 ORC3 -604973 gene 8547 FCN3 -604974 gene 11166 SOX21 -604975 gene 6660 SOX5 -604976 gene/phenotype 53632 PRKAG3 -604977 gene 8859 STK19 -604978 gene 11051 NUDT21 -604979 gene 11052 CPSF6 -604980 gene 29127 RACGAP1 -604981 gene 11193 WBP4 -604982 gene 3257 HPS1 -604983 gene 11232 POLG2 -604984 gene 8428 STK24 -604985 gene 6712 SPTBN2 -604986 gene 8315 BRAP -604987 gene 23601 CLEC5A -604988 gene 11309 SLCO2B1 -604989 gene 10418 SPON1 -604990 gene 9368 SLC9A3R1 -604991 gene 25859 PART1 -604992 gene 6345 SRL -604993 gene 8559 PRPF18 -604994 gene 10736 SIX2 -604995 gene 10864 SLC22A7 -604996 gene 5349 FXYD3 -604997 gene 9046 DOK2 -604998 gene 8536 CAMK1 -604999 gene 50944 SHANK1 -605000 gene 11151 CORO1A -605001 gene 23452 ANGPTL2 -605002 gene 10391 CORO2B -605003 gene 26054 SENP6 -605004 gene 2932 GSK3B -605005 gene 51809 GALNT7 -605006 gene 23401 FRAT2 -605007 gene 11096 ADAMTS5 -605008 gene 11174 ADAMTS6 -605009 gene 11173 ADAMTS7 -605010 gene 11005 SPINK5 -605011 gene 9508 ADAMTS3 -605012 gene 11198 SUPT16H -605013 phenotype 53341 MHAC -605014 gene 8676 STX11 -605015 gene 7761 ZNF214 -605016 gene 7762 ZNF215 -605017 gene 29802 VPREB3 -605018 gene 1540 CYLD -605019 phenotype - - -605020 gene 30813 VSX1 -605021 phenotype - - -605022 gene 5062 PAK2 -605023 gene 54363 HAO1 -605024 gene 9498 SLC4A8 -605025 gene 3675 ITGA3 -605026 predominantly phenotypes - - -605027 phenotype - - -605028 predominantly phenotypes - - -605029 gene 51348 KLRF1 -605030 gene 6788 STK3 -605031 gene 10733 PLK4 -605032 gene 10815 CPLX1 -605033 gene 10814 CPLX2 -605034 gene 100287932 TIMM23 -605035 gene 8936 WASF1 -605036 gene 51222 ZNF219 -605037 gene 57576 KIF17 -605038 gene 5379 PMS2P1 -605039 phenotype - - -605040 predominantly phenotypes - - -605041 phenotype - - -605042 gene 9439 MED23 -605043 gene 9441 MED26 -605044 gene 9442 MED27 -605045 gene 9443 MED7 -605046 gene 29979 UBQLN1 -605047 gene 3665 IRF7 -605048 gene 9641 IKBKE -605049 gene 57045 TWSG1 -605050 moved/removed - - -605051 gene 1269 CNR2 -605052 gene 6894 TARBP1 -605053 gene 6895 TARBP2 -605054 gene 10169 SERF2 -605055 phenotype - - -605056 gene 8976 WASL -605057 gene 10440 TIMM17A -605058 gene 10469 TIMM44 -605059 moved/removed - - -605060 gene 23729 SHPK -605061 gene 54386 TERF2IP -605062 gene 54429 TAS2R5 -605063 gene 10963 STIP1 -605064 gene 9493 KIF23 -605065 gene 11140 CDC37 -605066 gene 7531 YWHAE -605067 predominantly phenotypes - - -605068 gene 10810 WASF3 -605069 gene 2872 MKNK2 -605070 gene 8411 EEA1 -605071 gene 10287 RGS19 -605072 gene 10755 GIPC1 -605073 gene 4591 TRIM37 -605074 phenotype - - -605075 moved/removed - - -605076 gene 6618 SNAPC2 -605077 gene 55929 DMAP1 -605078 gene 23435 TARDBP -605079 gene 27164 SALL3 -605080 gene 54714 CNGB3 -605081 gene 9265 CYTH3 -605082 gene 11186 RASSF1 -605083 gene 2487 FRZB -605084 gene 10367 MICU1 -605085 gene 54210 TREM1 -605086 gene 54209 TREM2 -605087 gene 10026 PIGK -605088 gene 9961 MVP -605089 gene 64976 MRPL40 -605090 gene 5918 RARRES1 -605091 gene 221472 FGD2 -605092 gene 5920 RARRES3 -605093 gene 10019 SH2B3 -605094 gene 261729 STEAP2 -605095 gene - - -605096 gene 50636 ANO7 -605097 gene 85414 SLC45A3 -605098 moved/removed - - -605099 gene - - -605100 gene 8493 PPM1D -605101 gene 23118 TAB2 -605102 gene 10747 MASP2 -605103 gene 10874 NMU -605104 gene 54715 RBFOX1 -605105 predominantly phenotypes - - -605106 gene 23566 LPAR3 -605107 gene 8721 EDF1 -605108 gene 56923 NMUR2 -605109 gene 8925 HERC1 -605110 gene 9170 LPAR2 -605111 gene 9294 S1PR2 -605112 gene 29766 TMOD3 -605113 gene 10157 AASS -605114 gene 23626 SPO11 -605115 phenotype - - -605116 gene 55584 CHRNA9 -605117 gene 8835 SOCS2 -605118 gene 9306 SOCS6 -605119 gene 5496 PPM1G -605120 gene 2658 GDF2 -605121 gene 54700 RRN3 -605122 gene 6832 SUPV3L1 -605123 gene 6692 SPINT1 -605124 gene 10653 SPINT2 -605125 gene 11337 GABARAP -605126 gene 9457 FHL5 -605127 gene 26254 OPTC -605128 gene 9626 GUCA1C -605129 gene 10197 PSME3 -605130 phenotype - - -605131 gene 51741 WWOX -605132 gene 7091 TLE4 -605133 gene 22916 NCBP2 -605134 gene 26207 PITPNC1 -605135 moved/removed - - -605136 moved/removed - - -605137 moved/removed - - -605138 gene 51686 OAZ3 -605139 gene 10576 CCT2 -605140 gene 10574 CCT7 -605141 gene 7441 VPREB1 -605142 gene 10575 CCT4 -605143 gene 10121 ACTR1A -605144 gene 10120 ACTR1B -605145 gene 56172 ANKH -605146 gene 53637 S1PR5 -605147 gene 11061 LECT1 -605148 gene 11226 GALNT6 -605149 gene 10563 CXCL13 -605150 moved/removed - - -605151 moved/removed - - -605152 gene 25790 CCDC19 -605153 gene 10267 RAMP1 -605154 gene 10266 RAMP2 -605155 gene 10268 RAMP3 -605156 moved/removed - - -605157 gene 23574 - -605158 gene 7837 PXDN -605159 gene 84883 AIFM2 -605160 gene - - -605161 gene 149708 WFDC5 -605162 gene 90480 GADD45GIP1 -605163 gene 10663 CXCR6 -605164 gene 3066 HDAC2 -605165 gene 23598 PATZ1 -605166 gene 8841 HDAC3 -605167 gene 574 BAGE -605168 gene 2171 FABP5 -605169 gene 2001 ELF5 -605170 gene 9538 EI24 -605171 gene 9540 TP53I3 -605172 gene 9536 PTGES -605173 gene 8507 ENC1 -605174 gene 9510 ADAMTS1 -605175 gene 11095 ADAMTS8 -605176 gene 51179 HAO2 -605177 moved/removed - - -605178 gene 2622 GAS8 -605179 gene 750 C16orf3 -605180 gene 54407 SLC38A2 -605181 gene 51768 TM7SF3 -605182 gene 22821 RASA3 -605183 gene 51806 CALML5 -605184 gene 10605 PAIP1 -605185 gene 54567 DLL4 -605186 gene 11197 WIF1 -605187 gene 2850 GPR27 -605188 gene 54329 GPR85 -605189 gene 22943 DKK1 -605190 gene 23471 TRAM1 -605191 gene 9044 BTAF1 -605192 phenotype - - -605193 gene 9077 DIRAS3 -605194 gene 55997 CFC1 -605195 gene 145873 MESP2 -605196 gene 51805 COQ3 -605197 gene 8942 KYNU -605198 gene 11044 PAPD7 -605199 gene 6421 SFPQ -605200 gene 8916 HERC3 -605201 phenotype 56801 - -605202 gene 54187 NANS -605203 moved/removed - - -605204 gene 1861 TOR1A -605205 gene 55811 ADCY10 -605206 gene 10021 HCN4 -605207 gene 56603 CYP26B1 -605208 gene 57030 SLC17A7 -605209 gene 55743 CHFR -605210 gene 27185 DISC1 -605211 gene 56751 BARHL1 -605212 gene 343472 BARHL2 -605213 gene 5170 PDPK1 -605214 gene 10242 KCNMB2 -605215 gene 8935 SKAP2 -605216 gene 50649 ARHGEF4 -605217 gene 25759 SHC2 -605218 phenotype - - -605219 gene 56616 DIABLO -605220 gene 55911 APOBR -605221 gene 10772 SRSF10 -605222 gene 27094 KCNMB3 -605223 gene 27345 KCNMB4 -605224 gene 10692 RRH -605225 phenotype 57042 IBD7 -605226 gene 473 RERE -605227 gene 8434 RECK -605228 gene 9541 CIR1 -605229 phenotype 57309 SPG14 -605230 gene 7158 TP53BP1 -605231 moved/removed - - -605232 gene 65125 WNK1 -605233 phenotype - - -605234 gene 57191 VN1R1 -605235 gene 8996 NOL3 -605236 gene 10699 CORIN -605237 gene 9213 XPR1 -605238 gene 3176 HNMT -605239 gene 50617 ATP6V0A4 -605240 gene 56477 CCL28 -605241 gene 9450 LY86 -605242 gene 10083 USH1C -605243 gene 23643 LY96 -605244 phenotype 1257 CNC2 -605245 gene 29988 SLC2A8 -605246 gene 719 C3AR1 -605247 gene 55367 PIDD -605248 gene 57192 MCOLN1 -605249 phenotype - - -605250 gene 10257 ABCC4 -605251 gene 10057 ABCC5 -605252 gene 11201 POLI -605253 phenotype - - -605254 gene 23385 NCSTN -605255 gene 51513 ETV7 -605256 gene 56852 RAD18 -605257 gene 57379 AICDA -605258 phenotype - - -605259 phenotype - - -605260 moved/removed - - -605261 gene 50507 NOX4 -605262 gene 10397 NDRG1 -605263 gene 53358 SHC3 -605264 gene 10580 SORBS1 -605265 gene 57099 AVEN -605266 gene 56704 JPH1 -605267 gene 57158 JPH2 -605268 gene 57338 JPH3 -605269 gene 23603 CORO1C -605270 gene 6448 SGSH -605271 gene 51156 SERPINA10 -605272 gene 57447 NDRG2 -605273 gene 57446 NDRG3 -605274 predominantly phenotypes - - -605275 predominantly phenotypes 57762 - -605276 gene 9625 AATK -605277 gene 2909 ARHGAP35 -605278 gene 8824 CES2 -605279 gene 23491 CES3 -605280 phenotype - - -605281 gene 54514 DDX4 -605282 phenotype - - -605283 gene 54551 MAGEL2 -605284 gene 7248 TSC1 -605285 phenotype - - -605286 gene 11132 CAPN10 -605287 gene 57140 RNPEPL1 -605288 moved/removed - - -605289 phenotype - - -605290 gene 4976 OPA1 -605291 moved/removed - - -605292 gene 56953 NT5M -605293 phenotype 58156 OPA4 -605294 gene 4166 CHST6 -605295 gene 55137 FIGN -605296 gene 8624 PSMG1 -605297 gene 51497 NELFCD -605298 gene 10311 DSCR3 -605299 gene 23054 NCOA6 -605300 gene 10603 SH2B2 -605301 gene 6867 TACC1 -605302 gene 10579 TACC2 -605303 gene 10460 TACC3 -605304 gene 58157 NGB -605305 gene 57292 KIR2DL5A -605306 gene 50856 CLEC4A -605307 gene 11318 GPR182 -605308 gene 23567 ZNF346 -605309 phenotype - - -605310 gene 54535 CCHCR1 -605311 moved/removed - - -605312 gene 9518 GDF15 -605313 gene 9939 RBM8A -605314 gene 9759 HDAC4 -605315 gene 10014 HDAC5 -605316 moved/removed - - -605317 gene 93986 FOXP2 -605318 moved/removed - - -605319 gene 5209 PFKFB3 -605320 gene 5210 PFKFB4 -605321 predominantly phenotypes - - -605322 gene 58189 WFDC1 -605323 gene 58190 CTDSP1 -605324 gene 10513 APPBP2 -605325 gene 1577 CYP3A5 -605326 gene 8887 TAX1BP1 -605327 gene 4783 NFIL3 -605328 gene 51621 KLF13 -605329 moved/removed - - -605330 gene 50616 IL22 -605331 gene 23136 EPB41L3 -605332 gene 57626 KLHL1 -605333 gene 23047 PDS5B -605334 moved/removed - - -605335 gene 22822 PHLDA1 -605336 gene 10878 CFHR3 -605337 gene 10877 CFHR4 -605338 gene 9118 INA -605339 gene 9513 FXR2 -605340 gene 1551 CYP3A7 -605341 gene 29992 PILRA -605342 gene 29990 PILRB -605343 gene 10272 FSTL3 -605344 gene 4802 NFYC -605345 gene 8846 ALKBH1 -605346 moved/removed - - -605347 gene 23569 PADI4 -605348 gene 23585 TMEM50A -605349 gene 26502 NARF -605350 gene 9466 IL27RA -605351 gene 10875 FGL2 -605352 gene 9258 MFHAS1 -605353 gene 51738 GHRL -605354 gene 59082 CARD18 -605355 phenotype - - -605356 gene 7532 YWHAG -605357 gene 11037 STON1 -605358 gene 11036 GTF2A1L -605359 gene 11272 PRR4 -605360 gene 11007 CCDC85B -605361 phenotype - - -605362 phenotype - - -605363 gene 2571 GAD1 -605364 phenotype 63869 PSORS6 -605365 phenotype 60500 BRCA3 -605366 gene 10439 OLFM1 -605367 gene 60528 ELAC2 -605368 gene 665 BNIP3L -605369 gene 9407 TMPRSS11D -605370 gene 23092 ARHGAP26 -605371 gene 10564 ARFGEF2 -605372 gene 220988 HNRNPA3 -605373 phenotype - - -605374 gene 10408 MYCNOS -605375 phenotype - - -605376 phenotype - - -605377 gene 1760 DMPK -605378 gene 8086 AAAS -605379 gene 8139 GAN -605380 gene 8074 FGF23 -605381 gene 51458 RHCG -605382 moved/removed - - -605383 gene 50615 IL21R -605384 gene 59067 IL21 -605385 gene 9986 RCE1 -605386 gene 406881 MIRLET7A1 -605387 phenotype - - -605388 phenotype 60502 CPAT1 -605389 phenotype - - -605390 gene 9404 LPXN -605391 gene 9562 MINPP1 -605392 gene 11116 FGFR1OP -605393 gene 10765 KDM5B -605394 gene 60468 BACH2 -605395 gene 11018 TMED1 -605396 moved/removed - - -605397 gene 10666 CD226 -605398 gene 58191 CXCL16 -605399 gene 22795 NID2 -605400 predominantly phenotypes - - -605401 gene 10788 IQGAP2 -605402 gene 29126 CD274 -605403 gene 10333 TLR6 -605404 gene 666 BOK -605405 gene 9712 USP6NL -605406 gene 10972 TMED10 -605407 phenotype - - -605408 moved/removed - - -605409 gene 10915 TCERG1 -605410 gene 3751 KCND2 -605411 gene 3752 KCND3 -605412 gene 11159 RABL2A -605413 gene 11158 RABL2B -605414 gene 10347 ABCA7 -605415 gene 27123 DKK2 -605416 gene 27122 DKK3 -605417 gene 27121 DKK4 -605418 gene 27120 DKKL1 -605419 phenotype 63944 SCZD10 -605420 gene 60529 ALX4 -605421 gene 56999 ADAMTS9 -605422 gene 59348 ZNF350 -605423 gene 50846 DHH -605424 gene 9794 MAML1 -605425 gene 127534 GJB4 -605426 gene 63970 TP53AIP1 -605427 gene 59341 TRPV4 -605428 phenotype 23714 DFNB26 -605429 phenotype 54362 DFNM1 -605430 gene 9043 SPAG9 -605431 gene 23162 MAPK8IP3 -605432 phenotype - - -605433 gene 63971 KIF13A -605434 gene 63967 CLSPN -605435 gene 5587 PRKD1 -605436 gene 100033413 SNORD116-1 -605437 gene 5583 PRKCH -605438 gene 9228 DLGAP2 -605439 gene 26298 EHF -605440 gene 56893 UBQLN4 -605441 gene 9370 ADIPOQ -605442 gene 9589 WTAP -605443 gene 64002 PCGEM1 -605444 gene 27288 RBMXL2 -605445 gene 9229 DLGAP1 -605446 gene 57096 RPGRIP1 -605447 gene 50854 C6orf48 -605448 gene 10900 RUNDC3A -605449 gene 2940 GSTA3 -605450 gene 2941 GSTA4 -605451 gene 10298 PAK4 -605452 gene 10058 ABCB6 -605453 gene 23457 ABCB9 -605454 gene 23456 ABCB10 -605455 gene 25837 RAB26 -605456 gene 10282 BET1 -605457 gene 58985 IL22RA1 -605458 gene 55540 IL17RB -605459 gene 64240 ABCG5 -605460 gene 64241 ABCG8 -605461 gene 23765 IL17RA -605462 phenotype 100307118 - -605463 predominantly phenotypes 64239 - -605464 gene 11194 ABCB8 -605465 gene 11179 ZNF277 -605466 gene 55423 SIRPG -605467 gene 10782 ZNF274 -605468 gene 23580 CDC42EP4 -605469 gene 23081 KDM4C -605470 gene 56547 MMP26 -605471 gene 53349 ZFYVE1 -605472 phenotype - - -605473 gene 50613 UBQLN3 -605474 gene 54106 TLR9 -605475 gene 10458 BAIAP2 -605476 gene 116986 AGAP2 -605477 gene 8874 ARHGEF7 -605478 gene 59307 SIGIRR -605479 phenotype - - -605480 phenotype 64695 SLEB3 -605481 gene 259266 ASPM -605482 gene 9446 GSTO1 -605483 gene 64446 DNAI2 -605484 gene 83953 FCAMR -605485 gene 27072 VPS41 -605486 moved/removed - - -605487 gene 10776 ARPP19 -605488 gene 10777 ARPP21 -605489 gene 28981 IFT81 -605490 gene 9361 LONP1 -605491 gene 10529 NEBL -605492 gene 10446 LRRN2 -605493 gene 10612 TRIM3 -605494 gene 23421 ITGB3BP -605495 gene 28234 SLCO1B3 -605496 gene 11064 CNTRL -605497 gene 10491 CRTAP -605498 gene 9585 KIF20B -605499 gene - - -605500 gene 10200 MPHOSPH6 -605501 gene 10198 MPHOSPH9 -605502 gene 27000 DNAJC2 -605503 gene 10199 MPHOSPH10 -605504 gene 284366 KLK9 -605505 gene 26085 KLK13 -605506 gene 9559 VPS26A -605507 gene 26525 IL36RN -605508 gene 27177 IL36B -605509 gene 27179 IL36A -605510 gene 27178 IL37 -605511 gene 64699 TMPRSS3 -605512 gene 6785 ELOVL4 -605513 gene 2315 MLANA -605514 gene 65217 PCDH15 -605515 gene 27086 FOXP1 -605516 gene 64072 CDH23 -605517 gene 11041 B3GNT1 -605518 gene 23175 LPIN1 -605519 gene 9663 LPIN2 -605520 gene 64900 LPIN3 -605521 gene 9519 TBPL1 -605522 gene 64327 LMBR1 -605523 gene 10140 TOB1 -605524 moved/removed - - -605525 gene 81620 CDT1 -605526 phenotype 64851 - -605527 gene 27430 MAT2B -605528 gene 4759 NEU2 -605529 gene 26019 UPF2 -605530 gene 65110 UPF3A -605531 moved/removed - - -605532 gene 64750 SMURF2 -605533 gene 10718 NRG3 -605534 gene 10363 HMG20A -605535 gene 10362 HMG20B -605536 gene 26056 RAB11FIP5 -605537 gene 22926 ATF6 -605538 gene 23620 NTSR2 -605539 gene 43849 KLK12 -605540 gene 64282 PAPD5 -605541 gene 10451 VAV3 -605542 gene 56300 IL36G -605543 phenotype - - -605544 phenotype 64644 GINGF2 -605545 gene 9332 CD163 -605546 gene 51206 GP6 -605547 gene 11167 FSTL1 -605548 gene 8751 ADAM15 -605549 phenotype 54109 CORD8 -605550 gene 51655 RASD1 -605551 gene 9722 NOS1AP -605552 phenotype 65076 - -605553 gene 10914 PAPOLA -605554 gene 51744 CD244 -605555 gene 9049 AIP -605556 gene 57282 SLC4A10 -605557 gene 63976 PRDM16 -605558 gene 26281 FGF20 -605559 gene 3227 HOXC11 -605560 gene 3226 HOXC10 -605561 gene 11187 PKP3 -605562 gene 4250 SCGB2A2 -605563 gene 9478 CABP1 -605564 gene 10518 CIB2 -605565 gene 56729 RETN -605566 gene 65078 RTN4R -605567 gene 10572 SIVA1 -605568 gene 57154 SMURF1 -605569 gene 10888 GPR83 -605570 gene 8766 RAB11A -605571 gene 9271 PIWIL1 -605572 phenotype 65077 - -605573 gene 3293 HSD17B3 -605574 gene 11065 UBE2C -605575 gene 10051 SMC4 -605576 gene 10592 SMC2 -605577 gene 10235 RASGRP2 -605578 gene 10581 IFITM2 -605579 gene 10410 IFITM3 -605580 gene 51561 IL23A -605581 gene 10678 B3GNT2 -605582 phenotype 65014 CMD1K -605583 phenotype - - -605584 gene 9785 DHX38 -605585 gene 51362 CDC40 -605586 gene 10527 IPO7 -605587 gene 5276 SERPINI2 -605588 phenotype - - -605589 phenotype - - -605590 gene 23451 SF3B1 -605591 gene 10992 SF3B2 -605592 gene 23450 SF3B3 -605593 gene 10262 SF3B4 -605594 phenotype - - -605595 gene 10291 SF3A1 -605596 gene 10946 SF3A3 -605597 gene 668 FOXL2 -605598 phenotype 57044 IDDM18 -605599 gene 10434 LYPLA1 -605600 gene 10526 IPO8 -605601 gene 5553 PRG2 -605602 gene 51778 MYOZ2 -605603 gene 58529 MYOZ1 -605604 gene 51247 PAIP2 -605605 moved/removed - - -605606 phenotype 65245 PSORS7 -605607 gene 64946 CENPH -605608 gene 23562 CLDN14 -605609 gene 55074 OXR1 -605610 gene 11284 PNKP -605611 gene 23677 SH3BP4 -605612 gene 9467 SH3BP5 -605613 gene 9026 HIP1R -605614 gene 10985 GCN1L1 -605615 gene 10425 ARIH2 -605616 gene 54716 SLC6A20 -605617 moved/removed - - -605618 predominantly phenotypes - - -605619 gene 50604 IL20 -605620 gene 53832 IL20RA -605621 gene 53833 IL20RB -605622 gene 51294 PCDH12 -605623 gene 4289 MKLN1 -605624 gene 25820 ARIH1 -605625 gene 26579 MYEOV -605626 gene 64006 ERVK-6 -605627 phenotype - - -605628 gene 10553 HTATIP2 -605629 gene 11113 CIT -605630 gene 26279 PLA2G2D -605631 gene 9476 NAPSA -605632 gene 23443 SLC35A3 -605633 gene 57876 MUC3B -605634 gene 10559 SLC35A1 -605635 phenotype 79179 - -605636 gene 55384 MEG3 -605637 phenotype - - -605638 gene 57448 BIRC6 -605639 gene 27181 SIGLEC8 -605640 gene 27180 SIGLEC9 -605641 gene 9057 SLC7A6 -605642 phenotype 79052 - -605643 gene 25818 KLK5 -605644 gene 11202 KLK8 -605645 gene 84666 RETNLB -605646 gene 5172 SLC26A4 -605647 gene 26270 FBXO6 -605648 gene 25793 FBXO7 -605649 gene 26269 FBXO8 -605650 gene 51426 POLK -605651 gene 23291 FBXW11 -605652 gene 25827 FBXL2 -605653 gene 26224 FBXL3 -605654 gene 26235 FBXL4 -605655 gene 26234 FBXL5 -605656 gene 23194 FBXL7 -605657 gene 22992 KDM2A -605658 gene 64806 IL25 -605659 gene 29121 CLEC2D -605660 gene 10471 PFDN6 -605661 gene 10206 TRIM13 -605662 gene 9609 RAB36 -605663 gene 27156 RTDR1 -605664 gene 10112 KIF20A -605665 moved/removed - - -605666 gene 57105 CYSLTR2 -605667 gene 23179 RGL1 -605668 gene 25825 BACE2 -605669 gene 59351 PBOV1 -605670 phenotype - - -605671 gene 1657 DMXL1 -605672 predominantly phenotypes - - -605673 gene 54766 BTG4 -605674 gene 10950 BTG3 -605675 gene 9604 RNF14 -605676 phenotype - - -605677 gene 51703 ACSL5 -605678 gene 51085 MLXIPL -605679 gene 55801 IL26 -605680 gene 11177 BAZ1A -605681 gene 9031 BAZ1B -605682 gene 11176 BAZ2A -605683 gene 29994 BAZ2B -605684 gene 53840 TRIM34 -605685 predominantly phenotypes - - -605686 gene 23705 CADM1 -605687 gene 29949 IL19 -605688 gene 9362 CPNE6 -605689 gene 27132 CPNE7 -605690 gene 29998 GLTSCR1 -605691 gene 29997 GLTSCR2 -605692 gene 54822 TRPM7 -605693 gene 27314 RAB30 -605694 gene 11031 RAB31 -605695 gene 55330 BLOC1S4 -605696 gene 26251 KCNG2 -605697 gene 80329 ULBP1 -605698 gene 80328 ULBP2 -605699 gene 79465 ULBP3 -605700 gene 56658 TRIM39 -605701 gene 10107 TRIM10 -605702 gene 10894 LYVE1 -605703 gene 9218 VAPA -605704 gene 9217 VAPB -605705 gene 150094 SIK1 -605706 gene 54101 RIPK4 -605707 moved/removed - - -605708 gene 9826 ARHGEF11 -605709 gene 10550 ARL6IP5 -605710 gene 2676 GFRA3 -605711 phenotype - - -605712 gene 10558 SPTLC1 -605713 gene 9517 SPTLC2 -605714 phenotype - - -605715 gene 80381 CD276 -605716 gene 27133 KCNH5 -605717 gene 23308 ICOSLG -605718 gene 29079 MED4 -605719 gene 7462 LAT2 -605720 gene 50801 KCNK4 -605721 gene 50848 F11R -605722 gene 3773 KCNJ16 -605723 gene 80380 PDCD1LG2 -605724 phenotype - - -605725 gene 57716 PRX -605726 phenotype 80768 - -605727 phenotype 93999 OTSC2 -605728 phenotype 80770 - -605729 gene 80709 AKNA -605730 gene 9576 SPAG6 -605731 gene 26206 SPAG8 -605732 gene 27242 TNFRSF21 -605733 gene 27166 PRELID1 -605734 gene 23671 TMEFF2 -605735 phenotype - - -605736 gene 53347 UBASH3A -605737 gene 79444 BIRC7 -605738 phenotype 80771 - -605739 gene 339855 KY -605740 gene 50964 SOST -605741 gene 1880 GPR183 -605742 gene 51807 TUBA8 -605743 gene 55733 HHAT -605744 gene 2137 EXTL3 -605745 gene 79901 CYBRD1 -605746 phenotype 80871 - -605747 gene 26119 LDLRAP1 -605748 gene 53630 BCMO1 -605749 phenotype 81863 CTPL1 -605750 phenotype 81864 EVR3 -605751 phenotype - - -605752 gene 283987 HID1 -605753 gene 6691 SPINK2 -605754 gene 9091 PIGQ -605755 gene 51473 DCDC2 -605756 predominantly phenotypes - - -605757 gene 53918 PELO -605758 gene 51665 ASB1 -605759 gene 51676 ASB2 -605760 gene 51130 ASB3 -605761 gene 51666 ASB4 -605762 gene 5891 MOK -605763 gene 50651 SLC45A1 -605764 gene 51567 TDP2 -605765 gene 10301 DLEU1 -605766 gene 8847 DLEU2 -605767 gene 55824 PAG1 -605768 gene 27071 DAPP1 -605769 gene 51592 TRIM33 -605770 gene 10994 ILVBL -605771 gene 9167 COX7A2L -605772 gene 9166 EBAG9 -605773 gene 56413 LTB4R2 -605774 gene 11275 KLHL2 -605775 gene 26249 KLHL3 -605776 gene 2267 FGL1 -605777 gene 55512 SMPD3 -605778 gene 60491 NIF3L1 -605779 phenotype 81866 - -605780 gene 11108 PRDM4 -605781 gene 29984 RHOD -605782 gene 56648 EIF5A2 -605783 gene 10286 BCAS2 -605784 gene 57348 TTYH1 -605785 gene 27175 TUBG2 -605786 gene 27303 RBMS3 -605787 gene 57763 ANKRA2 -605788 gene 22924 MAPRE3 -605789 gene 10982 MAPRE2 -605790 gene 56164 STK31 -605791 gene 56158 TEX12 -605792 gene 56155 TEX14 -605793 gene 56163 RNF17 -605794 gene 54456 MOV10L1 -605795 gene 56154 TEX15 -605796 gene 56165 TDRD1 -605797 gene 136991 ASZ1 -605798 gene 56654 NPDC1 -605799 gene 81693 AMN -605800 gene 11100 HNRNPUL1 -605801 gene 10928 RALBP1 -605802 gene 9839 ZEB2 -605803 phenotype - - -605804 phenotype 117187 - -605805 phenotype - - -605806 gene 1005 CDH7 -605807 gene 28316 CDH20 -605808 predominantly phenotypes - - -605809 phenotype 8144 - -605810 gene 56945 MRPS22 -605811 gene 29107 NXT1 -605812 gene 11269 DDX19B -605813 gene 10204 NUTF2 -605814 phenotype - - -605815 gene 23636 NUP62 -605816 gene 10148 EBI3 -605817 gene 11035 RIPK3 -605818 phenotype 23713 DFNB27 -605819 gene 23481 PES1 -605820 phenotype - - -605821 gene 51327 AHSP -605822 predominantly phenotypes - - -605823 gene 64091 POPDC2 -605824 gene 64208 POPDC3 -605825 gene 23593 HEBP2 -605826 gene 50865 HEBP1 -605827 phenotype - - -605828 gene 11322 TMC6 -605829 gene 147138 TMC8 -605830 gene 53834 FGFRL1 -605831 gene 27006 FGF22 -605832 gene 55902 ACSS2 -605833 phenotype 338027 - -605834 gene 29765 TMOD4 -605835 gene 23670 TMEM2 -605836 gene 10497 UNC13B -605837 gene 8924 HERC2 -605838 predominantly phenotypes - - -605839 moved/removed - - -605840 gene 54778 RNF111 -605841 phenotype 100918 - -605842 gene 26608 TBL2 -605843 gene 55825 PECR -605844 phenotype 117188 - -605845 phenotype 114477 - -605846 gene 9275 BCL7B -605847 gene 9274 BCL7C -605848 gene 23581 CASP14 -605849 gene 29958 DMGDH -605850 phenotype - - -605851 gene 23463 ICMT -605852 gene 23332 CLASP1 -605853 gene 23122 CLASP2 -605854 gene 27113 BBC3 -605855 gene 57194 ATP10A -605856 phenotype - - -605857 gene 23433 RHOQ -605858 gene 83482 SCRT1 -605859 gene 27033 ZBTB32 -605860 gene 11123 RCAN3 -605861 gene 10330 CNPY2 -605862 gene 10329 TMEM5 -605863 gene 10331 B3GNT3 -605864 gene 79369 B3GNT4 -605865 gene 83756 TAS1R3 -605866 gene 148229 ATP8B3 -605867 gene 57198 ATP8B2 -605868 gene 23250 ATP11A -605869 gene 23200 ATP11B -605870 gene 51761 ATP8A2 -605871 moved/removed - - -605872 gene 10332 CLEC4M -605873 gene 54207 KCNK10 -605874 gene 51305 KCNK9 -605875 gene 10163 WASF2 -605876 gene 83417 FCRL4 -605877 gene 83416 FCRL5 -605878 gene 51341 ZBTB7A -605879 gene 3781 KCNN2 -605880 gene 23522 KAT6B -605881 gene 55343 SLC35C1 -605882 gene 83990 BRIP1 -605883 gene 27074 LAMP3 -605884 gene 196385 DNAH10 -605885 gene 57556 SEMA6A -605886 gene 1379 CR1L -605887 moved/removed - - -605888 gene 10938 EHD1 -605889 gene 27295 PDLIM3 -605890 gene 30846 EHD2 -605891 gene 30845 EHD3 -605892 gene 30844 EHD4 -605893 gene 10423 CDIPT -605894 gene 23741 EID1 -605895 gene 9470 EIF4E2 -605896 gene 9427 ECEL1 -605897 gene 56886 UGGT1 -605898 gene 55757 UGGT2 -605899 phenotype - - -605900 gene 9124 PDLIM1 -605901 gene 114131 UCN3 -605902 gene 90226 UCN2 -605903 gene 9260 PDLIM7 -605904 gene 10611 PDLIM5 -605905 gene 54165 DCUN1D1 -605906 gene 11155 LDB3 -605907 gene 56052 ALG1 -605908 gene 23209 MLC1 -605909 phenotype - - -605910 gene/phenotype 51129 ANGPTL4 -605911 phenotype - - -605912 gene 56955 MEPE -605913 phenotype 85504 - -605914 gene 51330 TNFRSF12A -605915 gene 10607 TBL3 -605916 gene 51332 SPTBN5 -605917 gene 22974 TPX2 -605918 gene 10417 SPON2 -605919 moved/removed - - -605920 gene 27067 STAU2 -605921 gene 6786 STIM1 -605922 gene 3613 IMPA2 -605923 gene 30812 SOX8 -605924 gene 10785 WDR4 -605925 gene 5116 PCNT -605926 gene 9463 PICK1 -605927 gene 27085 MTBP -605928 gene 27236 ARFIP1 -605929 gene 6643 SNX2 -605930 gene 8724 SNX3 -605931 gene 8723 SNX4 -605932 gene 23743 BHMT2 -605933 gene 81501 DCSTAMP -605934 phenotype 117190 - -605935 predominantly phenotypes - - -605936 gene 51411 BIN2 -605937 gene 27131 SNX5 -605938 gene 51227 PIGP -605939 gene 84812 PLCD4 -605940 gene 10409 BASP1 -605941 gene 9092 SART1 -605942 gene 29940 DSE -605943 gene 51573 GDE1 -605944 predominantly phenotypes - - -605945 predominantly phenotypes - - -605946 phenotype - - -605947 gene 9487 PIGL -605948 gene 51704 GPRC5B -605949 gene 55890 GPRC5C -605950 gene 83452 RAB33B -605951 gene 54344 DPM3 -605952 gene 51429 SNX9 -605953 gene 50807 ASAP1 -605954 gene 26998 FETUB -605955 gene 84504 NKX6-2 -605956 gene 64127 NOD2 -605957 moved/removed - - -605958 gene 10293 TRAIP -605959 gene - - -605960 gene 5394 EXOSC10 -605961 gene 5356 PLRG1 -605962 gene 10244 RABEPK -605963 gene 9784 SNX17 -605964 gene 29907 SNX15 -605965 gene 9610 RIN1 -605966 gene 3174 HNF4G -605967 phenotype 85505 - -605968 gene 5988 RFPL1 -605969 gene 10739 RFPL2 -605970 gene 10738 RFPL3 -605971 gene 10737 RFPL3S -605972 gene 10740 RFPL1S -605973 gene 10238 DCAF7 -605974 gene 10569 SLU7 -605975 gene 10250 SRRM1 -605976 gene 10773 ZBTB6 -605977 gene 83943 IMMP2L -605978 gene 23230 VPS13A -605979 gene 10302 SNAPC5 -605980 gene 10392 NOD1 -605981 gene 197131 UBR1 -605982 moved/removed - - -605983 gene 5518 PPP2R1A -605984 gene 8726 EED -605985 moved/removed - - -605986 gene 11171 STRAP -605987 gene 10401 PIAS3 -605988 gene 64421 DCLRE1C -605989 gene 51588 PIAS4 -605990 phenotype - - -605991 gene 25791 NGEF -605992 gene 64211 LHX5 -605993 gene 54704 PDP1 -605994 gene 51302 CYP39A1 -605995 gene 23095 KIF1B -605996 gene 1797 DXO -605997 gene 5522 PPP2R2C -605998 gene 10456 HAX1 -605999 gene 10462 CLEC10A -606000 gene 56244 BTNL2 -606001 gene 9235 IL32 -606002 phenotype - - -606003 phenotype - - -606004 gene 26088 GGA1 -606005 gene 23062 GGA2 -606006 gene 23163 GGA3 -606007 gene 51728 POLR3K -606008 gene 4818 NKG7 -606009 gene 22947 DUX4 -606010 gene 29959 NRBP1 -606011 gene 23584 VSIG2 -606012 phenotype 85507 DFNA18 -606013 gene 26271 FBXO5 -606014 gene 257 ALX3 -606015 gene 9214 FAIM3 -606016 gene 9817 KEAP1 -606017 gene 5433 POLR2D -606018 gene 10085 EDIL3 -606019 gene 11340 EXOSC8 -606020 gene 11339 OIP5 -606021 gene 23532 PRAME -606022 gene 53343 NUDT9 -606023 gene 5437 POLR2H -606024 moved/removed - - -606025 gene 26137 ZBTB20 -606026 gene 7469 NELFA -606027 gene 29894 CPSF1 -606028 gene 53981 CPSF2 -606029 gene 51692 CPSF3 -606030 gene 23644 EDC4 -606031 gene 11180 WDR6 -606032 gene 23524 SRRM2 -606033 gene 5440 POLR2K -606034 gene 10535 RNASEH2A -606035 phenotype 619503 - -606036 gene 9915 ARNT2 -606037 gene 10225 CD96 -606038 gene 58530 LY6G6D -606039 gene 8843 HCAR3 -606040 gene 49856 WRAP73 -606041 gene 8404 SPARCL1 -606042 gene 55892 MYNN -606043 gene 55422 ZNF331 -606044 gene 10534 SSSCA1 -606045 gene 55764 IFT122 -606046 gene 53407 STX18 -606047 gene 353514 LILRA5 -606048 gene 79143 MBOAT7 -606049 phenotype 93956 - -606050 gene 10537 UBD -606051 gene 26297 SERGEF -606052 moved/removed - - -606053 phenotype 94313 - -606054 phenotype - - -606055 gene 58488 PCTP -606056 phenotype - - -606057 gene 10411 RAPGEF3 -606058 gene 11069 RAPGEF4 -606059 gene 5569 PKIA -606060 gene 56521 DNAJC12 -606061 gene 57057 TBX20 -606062 gene 9126 SMC3 -606063 gene 9156 EXO1 -606064 gene 57124 CD248 -606065 gene 51554 ACKR4 -606066 gene 56956 LHX9 -606067 gene 56914 OTOR -606068 phenotype - - -606069 phenotype - - -606070 phenotype - - -606071 phenotype - - -606072 phenotype - - -606073 gene 27158 NDOR1 -606074 gene 26301 GBGT1 -606075 gene 56652 C10orf2 -606076 gene 8503 PIK3R3 -606077 gene 64783 RBM15 -606078 gene 57591 MKL1 -606079 gene 283316 CD163L1 -606080 gene 27159 CHIA -606081 gene 9868 TOMM70A -606082 phenotype 94337 - -606083 gene 55193 PBRM1 -606084 gene 11135 CDC42EP1 -606085 gene 26136 TES -606086 gene 9669 EIF5B -606087 gene 23336 SYNM -606088 gene 100137049 PLA2G4B -606089 gene 618 BCYRN1 -606090 gene 54677 CROT -606091 gene 89790 SIGLEC10 -606092 gene 85406 DNAJC14 -606093 gene 9360 PPIG -606094 gene 89858 SIGLEC12 -606095 gene 10465 PPIH -606096 gene 85329 LGALS12 -606097 gene 23556 PIGN -606098 gene 58533 SNX6 -606099 gene 3964 LGALS8 -606100 gene 30817 EMR2 -606101 gene 84658 EMR3 -606102 gene 23396 PIP5K1C -606103 gene 27244 SESN1 -606104 moved/removed - - -606105 gene 23446 SLC44A1 -606106 gene 57153 SLC44A2 -606107 gene 80736 SLC44A4 -606108 gene 5494 PPM1A -606109 gene 84955 NUDCD1 -606110 gene 66004 LYNX1 -606111 gene 84539 MCHR2 -606112 gene 11102 RPP14 -606113 gene 10248 POP7 -606114 gene 10775 POP4 -606115 gene 10556 RPP30 -606116 gene 10557 RPP38 -606117 gene 10799 RPP40 -606118 gene 84343 HPS3 -606119 gene 57152 SLURP1 -606120 gene - - -606121 gene 27297 CRCP -606122 gene 55504 TNFRSF19 -606123 gene 51127 TRIM17 -606124 gene 57093 TRIM49 -606125 gene 81603 TRIM8 -606126 gene 79370 BCL2L14 -606127 gene 93649 MYOCD -606128 moved/removed - - -606129 phenotype 114086 - -606130 gene 79102 RNF26 -606131 gene 84676 TRIM63 -606132 gene 10435 CDC42EP2 -606133 gene 10602 CDC42EP3 -606134 gene 51455 REV1 -606135 gene 43847 KLK14 -606136 gene 9462 RASAL2 -606137 gene 10669 CGREF1 -606138 gene 10668 CGRRF1 -606139 gene 83855 KLF16 -606140 gene 23039 XPO7 -606141 gene 64901 RANBP17 -606142 gene 56606 SLC2A9 -606143 gene 7976 FZD3 -606144 gene 51715 RAB23 -606145 gene 81031 SLC2A10 -606146 gene 8325 FZD8 -606147 gene 11211 FZD10 -606148 gene 3992 FADS1 -606149 gene 9415 FADS2 -606150 gene 3995 FADS3 -606151 gene 583 BBS2 -606152 gene 80704 SLC19A3 -606153 gene 514 ATP5E -606154 gene 94025 MUC16 -606155 predominantly phenotypes - - -606156 predominantly phenotypes - - -606157 gene 80025 PANK2 -606158 gene 26580 BSCL2 -606159 phenotype - - -606160 gene 53354 PANK1 -606161 gene 79646 PANK3 -606162 gene 55229 PANK4 -606163 moved/removed - - -606164 phenotype - - -606165 gene 66037 BOLL -606166 moved/removed - - -606167 gene 29933 GPR132 -606168 gene 11218 DDX20 -606169 moved/removed - - -606170 phenotype - - -606171 gene 94017 TRNAS1 -606172 gene 23540 TRNAS3 -606173 gene 80273 GRPEL1 -606174 predominantly phenotypes - - -606175 predominantly phenotypes - - -606176 phenotype - - -606177 predominantly phenotypes - - -606178 gene 64399 HHIP -606179 predominantly phenotypes 114293 - -606180 gene 5393 EXOSC9 -606181 gene 57062 DDX24 -606182 gene 8744 TNFSF9 -606183 predominantly phenotypes - - -606184 gene 81792 ADAMTS12 -606185 gene 94241 TP53INP1 -606186 gene 27101 CACYBP -606187 phenotype 114475 - -606188 gene 10863 ADAM28 -606189 gene 51232 CRIM1 -606190 predominantly phenotypes 117192 - -606191 gene 23048 FNBP1 -606192 gene 10917 BTNL3 -606193 gene 6561 SLC13A1 -606194 gene 25984 KRT23 -606195 gene 10265 IRX5 -606196 gene 79190 IRX6 -606197 gene 79192 IRX1 -606198 gene 153572 IRX2 -606199 gene 50805 IRX4 -606200 gene 79365 BHLHE41 -606201 gene 7466 WFS1 -606202 gene 51151 SLC45A2 -606203 gene 9846 GAB2 -606204 gene 8581 LY6D -606205 gene 6534 SLC6A7 -606206 gene 84560 MT4 -606207 gene 9154 SLC28A1 -606208 gene 9153 SLC28A2 -606209 gene 10652 YKT6 -606210 gene 57190 SEPN1 -606211 gene 51548 SIRT6 -606212 gene 51547 SIRT7 -606213 gene 6747 SSR3 -606214 gene 57731 SPTBN4 -606215 phenotype 7446 AVSD1 -606216 gene 51734 MSRB1 -606217 phenotype - - -606218 gene 22928 SEPHS2 -606219 gene 10131 TRAP1 -606220 predominantly phenotypes - - -606221 gene 22806 IKZF3 -606222 gene 10261 IGSF6 -606223 gene 5708 PSMD2 -606224 gene 51251 NT5C3A -606225 gene 80835 TAS1R1 -606226 gene 80834 TAS1R2 -606227 gene 83552 MFRP -606228 gene 26523 AGO1 -606229 gene 27161 AGO2 -606230 gene 85358 SHANK3 -606231 gene 55198 APPL2 -606232 phenotype - - -606233 gene 84432 PROK1 -606234 gene 22807 IKZF2 -606235 gene 114112 TXNRD3 -606236 gene 79058 ASPSCR1 -606237 gene 9392 TGFBRAP1 -606238 gene 64376 IKZF5 -606239 gene 64375 IKZF4 -606240 phenotype 114568 - -606241 gene 23405 DICER1 -606242 phenotype 100653373 - -606243 phenotype - - -606244 gene 10254 STAM2 -606245 gene 23512 SUZ12 -606246 gene 221895 JAZF1 -606247 gene 10617 STAMBP -606248 gene 23475 QPRT -606249 gene 65268 WNK2 -606250 gene 26290 GALNT8 -606251 gene 50614 GALNT9 -606252 gene 114609 TIRAP -606253 moved/removed - - -606254 gene 9403 - -606255 phenotype - - -606256 phenotype 192143 - -606257 phenotype 282549 - -606258 phenotype 282550 - -606259 gene 25855 BRMS1 -606260 gene 66036 MTMR9 -606261 gene 11162 NUDT6 -606262 moved/removed - - -606263 phenotype 94003 PDB4 -606264 gene 64581 CLEC7A -606265 gene 57634 EP400 -606266 gene 90427 BMF -606267 gene 51384 WNT16 -606268 gene 80326 WNT10A -606269 gene 115650 TNFRSF13C -606270 gene 81793 TLR10 -606271 gene 27184 DISC2 -606272 gene 1497 CTNS -606273 gene 8891 EIF2B3 -606274 gene 53944 CSNK1G1 -606275 moved/removed - - -606276 gene 55118 CRTAC1 -606277 gene 54472 TOLLIP -606278 gene 55294 FBXW7 -606279 gene 25890 ABI3BP -606280 gene 64151 NCAPG -606281 gene 23682 RAB38 -606282 phenotype 23723 DFNA24 -606283 gene 114815 SORCS1 -606284 gene 57537 SORCS2 -606285 gene 22986 SORCS3 -606286 gene 55510 DDX43 -606287 moved/removed - - -606288 gene 56114 PCDHGA1 -606289 gene 56113 PCDHGA2 -606290 gene 56112 PCDHGA3 -606291 gene 56111 PCDHGA4 -606292 gene 56110 PCDHGA5 -606293 gene 56109 PCDHGA6 -606294 gene 56108 PCDHGA7 -606295 gene 9708 PCDHGA8 -606296 gene 56107 PCDHGA9 -606297 gene 56106 PCDHGA10 -606298 gene 56105 PCDHGA11 -606299 gene 56104 PCDHGB1 -606300 gene 56103 PCDHGB2 -606301 gene 56102 PCDHGB3 -606302 gene 56101 PCDHGB5 -606303 gene 56100 PCDHGB6 -606304 gene 56099 PCDHGB7 -606305 gene 56098 PCDHGC4 -606306 gene 56097 PCDHGC5 -606307 gene 56147 PCDHA1 -606308 gene 56146 PCDHA2 -606309 gene 56145 PCDHA3 -606310 gene 56144 PCDHA4 -606311 gene 56143 PCDHA5 -606312 gene 56142 PCDHA6 -606313 gene 56141 PCDHA7 -606314 gene 56140 PCDHA8 -606315 gene 9752 PCDHA9 -606316 gene 56139 PCDHA10 -606317 gene 56138 PCDHA11 -606318 gene 56137 PCDHA12 -606319 gene 56136 PCDHA13 -606320 gene 56135 PCDHAC1 -606321 gene 56134 PCDHAC2 -606322 gene 23191 CYFIP1 -606323 gene 26999 CYFIP2 -606324 phenotype - - -606325 phenotype 116629 - -606326 gene 4990 SIX6 -606327 gene 29930 PCDHB1 -606328 gene 56133 PCDHB2 -606329 gene 56132 PCDHB3 -606330 gene 56131 PCDHB4 -606331 gene 26167 PCDHB5 -606332 gene 56130 PCDHB6 -606333 gene 56129 PCDHB7 -606334 gene 56128 PCDHB8 -606335 gene 56127 PCDHB9 -606336 gene 56126 PCDHB10 -606337 gene 56125 PCDHB11 -606338 gene 56124 PCDHB12 -606339 gene 56123 PCDHB13 -606340 gene 56122 PCDHB14 -606341 gene 56121 PCDHB15 -606342 gene 51804 SIX4 -606343 gene 27343 POLL -606344 gene 27434 POLM -606345 gene 57717 PCDHB16 -606346 phenotype - - -606347 gene 9051 PSTPIP1 -606348 phenotype 50941 IBD5 -606349 predominantly phenotypes - - -606350 gene 54840 APTX -606351 gene 83715 ESPN -606352 gene 57679 ALS2 -606353 phenotype - - -606354 moved/removed - - -606355 gene 8886 DDX18 -606356 gene 114908 TMEM123 -606357 gene 9188 DDX21 -606358 gene 10551 AGR2 -606359 gene 89780 WNT3A -606360 gene 7478 WNT8A -606361 gene 81029 WNT5B -606362 gene 93650 ACPT -606363 gene 51225 ABI3 -606364 moved/removed - - -606365 gene 27165 GLS2 -606366 gene 58480 RHOU -606367 phenotype - - -606368 gene 116519 APOA5 -606369 predominantly phenotypes - - -606370 gene 27010 TPK1 -606371 gene 11016 ATF7 -606372 gene 57053 CHRNA10 -606373 gene 56776 FMN2 -606374 gene 26229 B3GAT3 -606375 moved/removed - - -606376 gene 9486 CHST10 -606377 gene 27294 DHDH -606378 gene 27090 ST6GALNAC4 -606379 gene 53836 GPR87 -606380 gene 53829 P2RY13 -606381 gene 56670 SUCNR1 -606382 gene 9863 MAGI2 -606383 gene 53831 GPR84 -606384 gene 23327 NEDD4L -606385 gene 116448 OLIG1 -606386 gene 10215 OLIG2 -606387 gene 116447 TOP1MT -606388 gene 117145 THEM4 -606389 gene 117144 CATSPER1 -606390 moved/removed - - -606391 phenotype - - -606392 phenotype - - -606393 gene 27299 ADAMDEC1 -606394 phenotype - - -606395 gene 10113 PREB -606396 gene 55909 BIN3 -606397 gene 7401 CLRN1 -606398 gene 22809 ATF5 -606399 gene 55799 CACNA2D3 -606400 gene 23473 CAPN7 -606401 gene 10753 CAPN9 -606402 gene 56287 GKN1 -606403 gene 10368 CACNG3 -606404 gene 27092 CACNG4 -606405 gene 27091 CACNG5 -606406 gene 9284 NPIPA1 -606407 phenotype - - -606408 phenotype - - -606409 gene 83737 ITCH -606410 gene 84168 ANTXR1 -606411 gene 64849 SLC13A3 -606412 gene 7809 BSND -606413 gene 10022 INSL5 -606414 gene 11172 INSL6 -606415 moved/removed - - -606416 gene 114548 NLRP3 -606417 gene 55717 WDR11 -606418 gene 1718 DHCR24 -606419 gene 26121 PRPF31 -606420 gene 9844 ELMO1 -606421 gene 63916 ELMO2 -606422 gene 79767 ELMO3 -606423 gene 116093 DIRC1 -606424 gene 112398 EGLN2 -606425 gene 54583 EGLN1 -606426 gene 112399 EGLN3 -606427 gene 162967 ZNF320 -606428 gene 54659 UGT1A3 -606429 gene 54657 UGT1A4 -606430 gene 54579 UGT1A5 -606431 gene 54578 UGT1A6 -606432 gene 54577 UGT1A7 -606433 gene 54576 UGT1A8 -606434 gene 54600 UGT1A9 -606435 gene 54575 UGT1A10 -606436 gene 91683 SYT12 -606437 moved/removed - - -606438 phenotype - - -606439 gene 51062 ATL1 -606440 gene 161497 STRC -606441 gene 27429 HTRA2 -606442 gene 10152 ABI2 -606443 gene 10488 CREB3 -606444 gene 58487 CREBZF -606445 phenotype - - -606446 gene 114836 SLAMF6 -606447 gene 10921 RNPS1 -606448 gene 10587 TXNRD2 -606449 gene 11156 PTP4A3 -606450 gene 10276 NET1 -606451 phenotype 23719 DFNA30 -606452 gene 64393 ZMAT3 -606453 gene 987 LRBA -606454 gene 8892 EIF2B2 -606455 gene 23368 PPP1R13B -606456 gene 10360 NPM3 -606457 gene 25998 IBTK -606458 gene 64651 CSRNP1 -606459 gene 11054 OGFR -606460 phenotype 100329168 - -606461 gene 96764 TGS1 -606462 gene 5885 RAD21 -606463 gene 2629 GBA -606464 gene 57817 HAMP -606465 gene 28999 KLF15 -606466 gene 84106 PRAM1 -606467 gene 64577 ALDH8A1 -606468 gene 54433 GAR1 -606469 gene 84675 TRIM55 -606470 gene 55651 NHP2 -606471 gene 55505 NOP10 -606472 gene 26039 SS18L1 -606473 gene 51188 SS18L2 -606474 gene 57159 TRIM54 -606475 gene 51293 CD320 -606476 gene 80271 ITPKC -606477 gene 63826 SRR -606478 gene 25913 POT1 -606479 gene 57555 NLGN2 -606480 gene 10269 ZMPSTE24 -606481 gene 27124 INPP5J -606482 phenotype - - -606483 phenotype 387574 - -606484 gene 136319 MTPN -606485 gene 81488 POLR2M -606486 gene 57132 CHMP1B -606487 gene 57110 HRASLS -606488 gene 23016 EXOSC7 -606489 gene 51010 EXOSC3 -606490 gene 118460 EXOSC6 -606491 gene 54512 EXOSC4 -606492 gene 56915 EXOSC5 -606493 gene 51013 EXOSC1 -606494 gene 6487 ST3GAL3 -606495 gene 57787 MARK4 -606496 gene 112744 IL17F -606497 gene 54490 UGT2B28 -606498 gene 932 MS4A3 -606499 gene 64232 MS4A5 -606500 gene 92304 SCGB3A1 -606501 gene 54545 MTMR12 -606502 gene 58475 MS4A7 -606503 gene 79723 SUV39H2 -606504 gene 22794 CASC3 -606505 gene 54984 PINX1 -606506 gene 10549 PRDX4 -606507 moved/removed - - -606508 gene 115350 FCRL1 -606509 gene 79368 FCRL2 -606510 gene 115352 FCRL3 -606511 gene 4139 MARK1 -606512 gene 29993 PACSIN1 -606513 gene 29763 PACSIN3 -606514 gene 27128 CYTH4 -606515 gene 125050 RN7SK -606516 gene 4154 MBNL1 -606517 gene 57491 AHRR -606518 gene 26762 HAVCR1 -606519 predominantly phenotypes - - -606520 gene 80739 C6orf25 -606521 gene 60386 SLC25A19 -606522 gene 9573 GDF3 -606523 gene 57522 SRGAP1 -606524 gene 23380 SRGAP2 -606525 gene 9901 SRGAP3 -606526 gene 79083 MLPH -606527 predominantly phenotypes - - -606528 phenotype - - -606529 predominantly phenotypes - - -606530 gene 1593 CYP27A1 -606531 gene 117156 SCGB3A2 -606532 gene 30811 HUNK -606533 gene 9022 CLIC3 -606534 gene 64816 CYP3A43 -606535 gene 26292 MYCBP -606536 gene 25932 CLIC4 -606537 gene 4430 MYO1B -606538 gene 4641 MYO1C -606539 gene 4642 MYO1D -606540 gene 4645 MYO5B -606541 gene 4648 MYO7B -606542 gene 51564 HDAC7 -606543 gene 9734 HDAC9 -606544 gene 84340 GFM2 -606545 phenotype - - -606546 gene 57061 HYMAI -606547 gene 51338 MS4A4A -606548 gene 64231 MS4A6A -606549 gene 83661 MS4A8 -606550 gene 54860 MS4A12 -606551 gene 11178 LZTS1 -606552 phenotype - - -606553 gene 9351 SLC9A3R2 -606554 phenotype 780905 - -606555 gene 114088 TRIM9 -606556 gene 9830 TRIM14 -606557 gene 53335 BCL11A -606558 gene 64919 BCL11B -606559 gene 10346 TRIM22 -606560 gene 10407 SPAG11B -606561 gene 206358 SLC36A1 -606562 gene 53346 TM6SF1 -606563 gene 53345 TM6SF2 -606564 gene 56937 PMEPA1 -606565 gene 56649 TMPRSS4 -606566 gene 85366 MYLK2 -606567 gene 7104 TM4SF4 -606568 gene 54585 LZTFL1 -606569 gene 22908 SACM1L -606570 gene 6424 SFRP4 -606571 gene 753 LDLRAD4 -606572 gene 79400 NOX5 -606573 gene 2444 FRK -606574 phenotype - - -606575 gene 58538 MPP4 -606576 gene 83860 TAF3 -606577 gene 84174 SLA2 -606578 gene 89872 AQP10 -606579 phenotype - - -606580 gene 80207 OPA3 -606581 phenotype - - -606582 gene 28514 DLL1 -606583 gene 25824 PRDX5 -606584 gene 25930 PTPN23 -606585 gene 10117 ENAM -606586 gene 26064 RAI14 -606587 gene 26469 PTPN18 -606588 gene 29947 DNMT3L -606589 gene 23161 SNX13 -606590 gene 55666 NPLOC4 -606591 gene 80198 MUS81 -606592 gene 55350 VNN3 -606593 phenotype - - -606594 gene 80854 SETD7 -606595 phenotype - - -606596 gene 79147 FKRP -606597 gene 5077 PAX3 -606598 gene 54332 GDAP1 -606599 gene 10628 TXNIP -606600 gene 5923 RASGRF1 -606601 gene 85314 ERVE-1 -606602 gene 79870 BAALC -606603 gene 128178 EDARADD -606604 gene 114907 FBXO32 -606605 gene 84126 ATRIP -606606 moved/removed - - -606607 gene 5688 PSMA7 -606608 gene 10413 YAP1 -606609 gene 11277 TREX1 -606610 gene 55968 NSFL1C -606611 gene 55894 DEFB103B -606612 phenotype - - -606613 phenotype 192144 HDLCQ1 -606614 gene 5924 RASGRF2 -606615 gene 55662 HIF1AN -606616 phenotype 266691 DYX6 -606617 moved/removed - - -606618 gene 11072 DUSP14 -606619 gene 57733 GBA3 -606620 gene 56833 SLAMF8 -606621 gene 55081 IFT57 -606622 gene 50485 SMARCAL1 -606623 gene 8630 HSD17B6 -606624 gene 63973 NEUROG2 -606625 gene 57823 SLAMF7 -606626 gene 23002 DAAM1 -606627 gene 23500 DAAM2 -606628 gene 27232 GNMT -606629 gene 22999 RIMS1 -606630 gene 9699 RIMS2 -606631 phenotype - - -606632 predominantly phenotypes - - -606633 gene 121340 SP7 -606634 gene 117159 DCD -606635 gene 5651 TMPRSS15 -606636 gene 22861 NLRP1 -606637 gene 23615 PYY2 -606638 gene 23614 PPY2 -606639 gene 85476 GFM1 -606640 phenotype 253 ALS3 -606641 phenotype 170815 BMIQ1 -606642 moved/removed - - -606643 phenotype 192149 BMIQ2 -606644 gene 93185 IGSF8 -606645 gene 116984 ARAP2 -606646 gene 116985 ARAP1 -606647 gene 64411 ARAP3 -606648 gene 116379 IL22RA2 -606649 gene 59269 HIVEP3 -606650 gene 116443 GRIN3A -606651 gene 116444 GRIN3B -606652 gene 84868 HAVCR2 -606653 gene 59352 LGR6 -606654 gene 59350 RXFP1 -606655 gene 122042 RXFP2 -606656 phenotype 100874532 - -606657 phenotype - - -606658 phenotype - - -606659 gene 26521 TIMM8B -606660 phenotype 170592 - -606661 phenotype 170593 - -606662 phenotype 170594 - -606663 gene 4017 LOXL2 -606664 phenotype - - -606665 gene 94233 OPN4 -606666 gene 55366 LGR4 -606667 gene 8549 LGR5 -606668 phenotype 170595 IBD8 -606669 gene 53827 FXYD5 -606670 gene 6992 PPP1R11 -606671 gene 51517 NCKIPSD -606672 gene 2811 GP1BA -606673 gene 51733 UPB1 -606674 phenotype 50942 IBD6 -606675 phenotype 50608 IBD4 -606676 gene 51393 TRPV2 -606677 gene 170482 CLEC4C -606678 gene 79054 TRPM8 -606679 gene 56302 TRPV5 -606680 gene 55503 TRPV6 -606681 gene 64324 NSD1 -606682 gene 89781 HPS4 -606683 gene 53826 FXYD6 -606684 gene 53822 FXYD7 -606685 phenotype - - -606686 gene 1967 EIF2B1 -606687 gene 8890 EIF2B4 -606688 phenotype - - -606689 phenotype 2722 GLC1B -606690 phenotype - - -606691 gene 56971 CEACAM19 -606692 gene 84231 TRAF7 -606693 phenotype - - -606694 gene 9631 NUP155 -606695 gene 23596 OPN3 -606696 gene 11104 KATNA1 -606697 gene 10224 ZNF443 -606698 gene 11063 SOX30 -606699 gene 9931 HELZ -606700 gene 90007 MIDN -606701 gene 644168 DRGX -606702 gene 5314 PKHD1 -606703 phenotype - - -606704 gene 10936 GPR75 -606705 phenotype - - -606706 gene 117531 TMC1 -606707 gene 117532 TMC2 -606708 phenotype 171157 SHFM5 -606709 gene 8492 PRSS12 -606710 gene 10186 LHFP -606711 phenotype 171013 - -606712 phenotype 171014 - -606713 phenotype - - -606714 gene 10957 PNRC1 -606715 gene 55515 ASIC4 -606716 gene 9027 NAT8 -606717 gene 54739 XAF1 -606718 gene 1836 SLC26A2 -606719 phenotype - - -606720 gene 8909 ENDOU -606721 predominantly phenotypes - - -606722 gene 83988 NCALD -606723 gene 8550 MAPKAPK5 -606724 gene 8569 MKNK1 -606725 gene 54982 CLN6 -606726 gene 57468 SLC12A5 -606727 gene 159296 NKX2-3 -606728 gene 8436 SDPR -606729 gene 23762 OSBP2 -606730 gene 114876 OSBPL1A -606731 gene 9885 OSBPL2 -606732 gene 26031 OSBPL3 -606733 gene 114879 OSBPL5 -606734 gene 114880 OSBPL6 -606735 gene 114881 OSBPL7 -606736 gene 114882 OSBPL8 -606737 gene 114883 OSBPL9 -606738 gene 114884 OSBPL10 -606739 gene 114885 OSBPL11 -606740 gene 7733 ZNF180 -606741 gene 339318 ZNF181 -606742 gene 7092 TLL1 -606743 gene 7093 TLL2 -606744 phenotype - - -606745 gene 56288 PARD3 -606746 gene 56005 C19orf10 -606747 gene 7716 VEZF1 -606748 gene 23406 COTL1 -606749 gene 27283 TINAG -606750 gene 81030 ZBP1 -606751 gene 80975 TMPRSS5 -606752 predominantly phenotypes - - -606753 gene 7268 TTC4 -606754 gene 25939 SAMHD1 -606755 gene 51702 PADI3 -606756 gene 51478 HSD17B7 -606757 gene 57835 SLC4A5 -606758 gene 53905 DUOX1 -606759 gene 50506 DUOX2 -606760 moved/removed - - -606761 gene 23417 MLYCD -606762 phenotype - - -606763 phenotype - - -606764 phenotype - - -606765 gene 7173 TPO -606766 phenotype - - -606767 gene 170850 KCNG3 -606768 phenotype - - -606769 gene 113510 HELQ -606770 phenotype 171511 - -606771 phenotype 171512 - -606772 phenotype - - -606773 predominantly phenotypes - - -606774 gene 55586 MIOX -606775 gene 10675 CSPG5 -606776 gene 116179 TGM7 -606777 phenotype - - -606778 gene 54434 SSH1 -606779 gene 85464 SSH2 -606780 gene 54961 SSH3 -606781 gene 7086 TKT -606782 gene 51267 CLEC1A -606783 gene 51266 CLEC1B -606784 gene 2931 GSK3A -606785 phenotype - - -606786 gene 10871 CD300C -606787 phenotype 171513 - -606788 phenotype 171514 - -606789 phenotype 171515 - -606790 gene 11314 CD300A -606791 gene 93492 TPTE2 -606792 gene 59340 HRH4 -606793 gene 9520 NPEPPS -606794 gene 1468 SLC25A10 -606795 gene 10478 SLC25A17 -606796 gene 6767 ST13 -606797 gene 6768 ST14 -606798 phenotype - - -606799 phenotype - - -606800 gene 2548 GAA -606801 gene 10296 MAEA -606802 gene 6689 SPIB -606803 gene 26027 ACOT11 -606804 gene 51280 GOLM1 -606805 gene 27333 GOLIM4 -606806 gene 10841 FTCD -606807 gene 54756 IL17RD -606808 gene 53904 MYO3A -606809 gene 64746 ACBD3 -606810 gene 5625 PRODH -606811 gene 8659 ALDH4A1 -606812 phenotype - - -606813 gene 11182 SLC2A6 -606814 gene 10394 PRG3 -606815 gene 163732 CITED4 -606816 gene 54847 SIDT1 -606817 gene 171558 PTCRA -606818 gene 10072 DPP3 -606819 gene 54878 DPP8 -606820 gene 51022 GLRX2 -606821 gene 10466 COG5 -606822 gene 55624 POMGNT1 -606823 gene 25960 GPR124 -606824 phenotype - - -606825 gene 64759 TNS3 -606826 gene 57125 PLXDC1 -606827 gene 84898 PLXDC2 -606828 gene 55577 NAGK -606829 gene 2395 FXN -606830 gene 23287 AGTPBP1 -606831 gene 58484 NLRC4 -606832 gene 51752 ERAP1 -606833 gene 58508 KMT2C -606834 gene 9757 KMT2B -606835 phenotype - - -606836 gene 9245 GCNT3 -606837 gene 9821 RB1CC1 -606838 gene 29108 PYCARD -606839 gene 53841 CDHR5 -606840 phenotype - - -606841 gene 9191 DEDD -606842 phenotype - - -606843 phenotype - - -606844 gene 7840 ALMS1 -606845 gene 57120 GOPC -606846 gene 150572 SMYD1 -606847 gene 6949 TCOF1 -606848 gene 140609 NEK7 -606849 gene 59286 UBL5 -606850 gene 145282 MIPOL1 -606851 predominantly phenotypes - - -606852 phenotype 170534 PARK10 -606853 gene 534 ATP6V1G2 -606854 phenotype - - -606855 gene 117579 RLN3 -606856 phenotype - - -606857 gene 2729 GCLC -606858 moved/removed - - -606859 moved/removed - - -606860 gene 710 SERPING1 -606861 gene 160065 PATE1 -606862 gene 126014 OSCAR -606863 gene 9760 TOX -606864 phenotype - - -606865 gene 10690 FUT9 -606866 gene 740 MRPL49 -606867 gene 64689 GORASP1 -606868 gene 28996 HIPK2 -606869 gene 3073 HEXA -606870 gene 58494 JAM2 -606871 gene 83700 JAM3 -606872 gene 79872 CBLL1 -606873 gene 3074 HEXB -606874 phenotype 246321 - -606875 phenotype 246322 - -606876 gene 23760 PITPNB -606877 gene 23520 ANP32C -606878 gene 23519 ANP32D -606879 gene 26227 PHGDH -606880 gene 9994 CASP8AP2 -606881 gene 29109 FHOD1 -606882 gene 540 ATP7B -606883 gene 51135 IRAK4 -606884 gene 10181 RBM5 -606885 gene 35 ACADS -606886 gene 10180 RBM6 -606887 gene 6821 SUOX -606888 gene 8973 CHRNA6 -606889 phenotype - - -606890 gene 2581 GALC -606891 gene 84824 FCRLA -606892 gene 23673 STX12 -606893 predominantly phenotypes - - -606894 predominantly phenotypes - - -606895 predominantly phenotypes - - -606896 phenotype 171089 DYX5 -606897 gene 1130 LYST -606898 gene 59285 CACNG6 -606899 gene 59284 CACNG7 -606900 gene 59283 CACNG8 -606901 moved/removed - - -606902 gene 26108 PYGO1 -606903 gene 90780 PYGO2 -606904 moved/removed - - -606905 gene 57580 PREX1 -606906 gene 29960 FTSJ2 -606907 gene 55937 APOM -606908 gene 84364 ARFGAP2 -606909 gene 8674 VAMP4 -606910 gene 10017 BCL2L10 -606911 gene 9522 SCAMP1 -606912 gene 10066 SCAMP2 -606913 gene 10067 SCAMP3 -606914 gene 5570 PKIB -606915 gene 81491 GPR63 -606916 gene 83873 GPR61 -606917 gene 118442 GPR62 -606918 gene 9950 GOLGA5 -606919 gene 10715 CERS1 -606920 gene 29956 CERS2 -606921 gene 27201 GPR78 -606922 gene 27199 OXGR1 -606923 gene 27198 HCAR1 -606924 moved/removed - - -606925 gene 84109 QRFPR -606926 gene 57121 LPAR5 -606927 gene 83551 TAAR8 -606928 phenotype 246259 - -606929 gene 84321 THOC3 -606930 gene 9984 THOC1 -606931 moved/removed - - -606932 gene 51699 VPS29 -606933 gene 7299 TYR -606934 gene 51103 NDUFAF1 -606935 gene 84991 RBM17 -606936 gene 54795 TRPM4 -606937 phenotype - - -606938 gene 7390 UROS -606939 gene 526 ATP6V1B2 -606940 gene 79776 ZFHX4 -606941 gene 79796 ALG9 -606942 gene 11316 COPE -606943 phenotype - - -606944 gene 55914 ERBB2IP -606945 gene 3949 LDLR -606946 gene 29882 ANAPC2 -606947 gene 29945 ANAPC4 -606948 gene 51433 ANAPC5 -606949 gene 51434 ANAPC7 -606950 gene 29953 TRHDE -606951 gene 64135 IFIH1 -606952 phenotype - - -606953 gene 2582 GALE -606954 gene 56242 ZNF253 -606955 moved/removed - - -606956 gene 10172 ZNF256 -606957 gene 113835 ZNF257 -606958 gene 64398 MPP5 -606959 gene 51678 MPP6 -606960 phenotype 282551 - -606961 gene 23559 WBP1 -606962 gene 23558 WBP2 -606963 phenotype 260431 - -606964 gene 11329 STK38 -606965 gene 10922 FASTK -606966 phenotype - - -606967 gene 3931 LCAT -606968 gene 29904 EEF2K -606969 gene 50628 GEMIN4 -606970 moved/removed - - -606971 moved/removed - - -606972 phenotype 353124 - -606973 gene 9382 COG1 -606974 gene 22796 COG2 -606975 gene 83548 COG3 -606976 gene 25839 COG4 -606977 gene 57511 COG6 -606978 gene 91949 COG7 -606979 gene 84342 COG8 -606980 gene 56997 ADCK3 -606981 gene 54331 GNG2 -606982 gene 9453 GGPS1 -606983 gene 84649 DGAT2 -606984 phenotype - - -606985 gene 26610 ELP4 -606986 moved/removed - - -606987 gene 131890 GRK7 -606988 gene 11261 CHP1 -606989 gene 4353 MPO -606990 gene 9276 COPB2 -606991 gene 9807 IP6K1 -606992 gene 51447 IP6K2 -606993 gene 117283 IP6K3 -606994 gene 10188 TNK2 -606995 phenotype 260432 - -606996 phenotype - - -606997 gene 10438 C1D -606998 gene 10211 FLOT1 -606999 gene 2592 GALT -607000 gene 9862 MED24 -607001 gene 79813 EHMT1 -607002 gene 60675 PROK2 -607003 gene 85480 TSLP -607004 phenotype 246260 - -607005 gene 25929 GEMIN5 -607006 gene 79833 GEMIN6 -607007 gene 23557 SNAPIN -607008 gene 34 ACADM -607009 gene 140803 TRPM6 -607010 gene 55802 DCP1A -607011 gene 391627 USP17L9P -607012 gene 55814 BDP1 -607013 gene 55290 BRF2 -607014 phenotype - - -607015 phenotype - - -607016 phenotype - - -607017 phenotype 192644 DFNA21 -607018 gene 23266 LPHN2 -607019 gene 283349 RASSF3 -607020 gene 83593 RASSF5 -607021 gene 23544 SEZ6L -607022 gene 140690 CTCFL -607023 gene 10769 PLK2 -607024 gene 51163 DBR1 -607025 gene 9833 MELK -607026 gene 89797 NAV2 -607027 gene 523 ATP6V1A -607028 gene 9114 ATP6V0D1 -607029 gene 10791 VAMP5 -607030 gene 25801 GCA -607031 gene 11019 LIAS -607032 gene 23049 SMG1 -607033 gene 51106 TFB1M -607034 moved/removed - - -607035 gene 51684 SUFU -607036 gene 3712 IVD -607037 gene 1962 EHHADH -607038 gene 146183 OTOA -607039 phenotype - - -607040 gene 85320 ABCC11 -607041 gene 94160 ABCC12 -607042 gene 1201 CLN3 -607043 gene 10758 TRAF3IP2 -607044 predominantly phenotypes - - -607045 gene 196475 RMST -607046 gene 56993 TOMM22 -607047 gene 4287 ATXN3 -607048 gene 10948 STARD3 -607049 gene 134429 STARD4 -607050 gene 80765 STARD5 -607051 gene 147323 STARD6 -607052 gene 11334 TUSC2 -607053 phenotype 353127 - -607054 gene 23612 PHLDA3 -607055 gene 64216 TFB2M -607056 gene 50939 IMPG2 -607057 gene 11274 USP18 -607058 gene 57369 GJD2 -607059 gene 55630 SLC39A4 -607060 phenotype - - -607061 gene 10728 PTGES3 -607062 gene 51661 FKBP7 -607063 gene 60681 FKBP10 -607064 gene 26577 PCOLCE2 -607065 gene 25797 QPCT -607066 gene 162514 TRPV3 -607067 gene 246744 STH -607068 gene 11068 CYB561D2 -607069 gene 11070 TMEM115 -607070 gene 51364 ZMYND10 -607071 gene 3373 HYAL1 -607072 gene 10641 NPRL2 -607073 gene 24142 NAT6 -607074 gene 25865 PRKD2 -607075 gene 11333 PDAP1 -607076 gene 51050 PI15 -607077 gene 23683 PRKD3 -607078 phenotype - - -607079 gene 57127 RHBG -607080 phenotype - - -607081 gene 55080 TAPBPL -607082 gene 9254 CACNA2D2 -607083 gene 54904 WHSC1L1 -607084 phenotype - - -607085 phenotype 246750 - -607086 phenotype 252842 - -607087 phenotype 252843 - -607088 phenotype 246751 - -607089 gene 23582 CCNDBP1 -607090 gene 25949 SYF2 -607091 phenotype - - -607092 gene 56848 SPHK2 -607093 gene 4524 MTHFR -607094 gene 9655 SOCS5 -607095 phenotype - - -607096 gene 116085 SLC22A12 -607097 gene 55867 SLC22A11 -607098 gene - - -607099 gene 25988 HINFP -607100 gene 4867 NPHP1 -607101 phenotype - 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- -607722 gene 9694 EMC2 -607723 gene 23353 SUN1 -607724 gene 84698 CAPS2 -607725 gene 10038 PARP2 -607726 gene 10039 PARP3 -607727 gene 55832 CAND1 -607728 phenotype 353147 - -607729 gene 54541 DDIT4 -607730 gene 115265 DDIT4L -607731 predominantly phenotypes 619496 - -607732 gene 23098 SARM1 -607733 gene 23513 SCRIB -607734 phenotype - - -607735 gene 10424 PGRMC2 -607736 phenotype - - -607737 gene 9982 FGFBP1 -607738 gene 9312 KCNB2 -607739 moved/removed - - -607740 gene 84669 USP32 -607741 gene 729873 TBC1D3 -607742 gene 192666 KRT24 -607743 gene 10818 FRS2 -607744 gene 10817 FRS3 -607745 phenotype - - -607746 gene 10979 FERMT2 -607747 gene 54751 FBLIM1 -607748 phenotype - - -607749 gene 83461 CDCA3 -607750 gene 27350 APOBEC3C -607751 gene 5726 TAS2R38 -607752 gene 10309 CCNO -607753 gene 23583 SMUG1 -607754 gene 23608 MKRN1 -607755 gene 23542 MAPK8IP2 -607756 gene 60496 AASDHPPT -607757 gene 25776 CBY1 -607758 gene 56998 CTNNBIP1 -607759 gene 3674 ITGA2B -607760 gene 11073 TOPBP1 -607761 gene 84623 KIRREL3 -607762 gene 84063 KIRREL2 -607763 gene 9744 ACAP1 -607764 gene 80270 HSD3B7 -607765 phenotype - - -607766 gene 23527 ACAP2 -607767 gene 83667 SESN2 -607768 gene 143686 SESN3 -607769 gene 57664 PLEKHA4 -607770 gene 54477 PLEKHA5 -607771 gene 22874 PLEKHA6 -607772 gene 59338 PLEKHA1 -607773 gene 59339 PLEKHA2 -607774 gene 65977 PLEKHA3 -607775 gene 23704 KCNE4 -607776 gene 25942 SIN3A -607777 gene 23309 SIN3B -607778 phenotype - - -607779 gene 164091 PAQR7 -607780 gene 85315 PAQR8 -607781 gene 54852 PAQR5 -607782 gene 55692 LUC7L -607783 gene 23184 MESDC2 -607784 gene 64137 ABCG4 -607785 phenotype - - -607786 gene 255738 PCSK9 -607787 gene 160897 GPR180 -607788 gene 90411 MCFD2 -607789 gene 23469 PHF3 -607790 gene 80312 TET1 -607791 phenotype - - -607792 gene 257144 GCSAM -607793 gene 56342 PPAN -607794 gene 317751 MESTIT1 -607795 gene 9128 PRPF4 -607796 gene 51131 PHF11 -607797 gene 9410 SNRNP40 -607798 gene 138474 TAF1L -607799 gene 23390 ZDHHC17 -607800 gene 26154 ABCA12 -607801 phenotype - - -607802 gene 26507 CNNM1 -607803 gene 54805 CNNM2 -607804 gene 26505 CNNM3 -607805 gene 26504 CNNM4 -607806 gene 133060 OTOP1 -607807 gene 154664 ABCA13 -607808 gene 644524 NKX2-4 -607809 gene 38 ACAT1 -607810 gene 91543 RSAD2 -607811 gene 55003 PAK1IP1 -607812 phenotype - - -607813 gene 9890 - -607814 gene 388531 RGS9BP -607815 gene 56899 ANKS1B -607816 gene 84108 PCGF6 -607817 gene 157680 VPS13B -607818 gene 22891 ZNF365 -607819 gene 64924 SLC30A5 -607820 gene 51361 HOOK1 -607821 phenotype - - -607822 phenotype - - -607823 phenotype - - -607824 gene 29911 HOOK2 -607825 gene 84376 HOOK3 -607826 gene 10768 AHCYL1 -607827 gene 92736 OTOP2 -607828 gene 347741 OTOP3 -607829 phenotype 352956 MMVP2 -607830 gene 80144 FRAS1 -607831 phenotype - - -607832 phenotype - - -607833 gene 255061 TAC4 -607834 phenotype - - -607835 gene 51639 SF3B6 -607836 phenotype - - -607837 gene 2055 CLN8 -607838 gene 84572 GNPTG -607839 gene 2632 GBE1 -607840 gene 79158 GNPTAB -607841 phenotype - - -607842 phenotype - - -607843 gene 93035 PKHD1L1 -607844 gene 23592 LEMD3 -607845 gene 57510 XPO5 -607846 gene 55798 METTL2B -607847 phenotype - - -607848 gene 83547 RILP -607849 gene 51109 RDH11 -607850 phenotype - - -607851 gene 85407 NKD1 -607852 gene 85409 NKD2 -607853 phenotype 619493 - 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-607894 gene 114780 PKD1L2 -607895 gene 342372 PKD1L3 -607896 gene 124641 OVCA2 -607897 gene 124540 MSI2 -607898 gene 57761 TRIB3 -607899 gene 51352 WT1-AS -607900 gene 55612 FERMT1 -607901 gene 83706 FERMT3 -607902 gene 10073 SNUPN -607903 phenotype - - -607904 gene 8912 CACNA1H -607905 gene 85365 ALG2 -607906 phenotype - - -607907 phenotype - - -607908 gene 55679 LIMS2 -607909 gene 51582 AZIN1 -607910 gene 64147 KIF9 -607911 gene 9852 EPM2AIP1 -607912 gene 51714 - -607913 gene 257202 GPX6 -607914 gene 280636 C11orf31 -607915 gene 85465 EPT1 -607916 gene 58515 - -607917 gene 83642 - -607918 gene 55829 VIMP -607919 gene 348303 - -607920 moved/removed - - -607921 phenotype - - -607922 gene 53947 A4GALT -607923 gene 9892 SNAP91 -607924 gene 378938 MALAT1 -607925 gene 151888 BTLA -607926 gene 29915 HCFC2 -607927 gene 51479 ANKFY1 -607928 gene 25861 DFNB31 -607929 gene 83605 CCM2 -607930 gene 54360 CYTL1 -607931 gene 11273 ATXN2L -607932 phenotype - - -607933 gene 23657 SLC7A11 -607934 gene 29943 PADI1 -607935 gene 11240 PADI2 -607936 phenotype - - -607937 gene 79923 NANOG -607938 gene 50863 NTM -607939 gene 285362 SUMF1 -607940 gene 25870 SUMF2 -607941 phenotype - - -607942 gene 118788 PIK3AP1 -607943 gene 10156 RASA4 -607944 phenotype - - -607945 gene 51094 ADIPOR1 -607946 gene 79602 ADIPOR2 -607947 gene 283518 KCNRG -607948 phenotype - - -607949 phenotype 404716 - -607950 gene 29122 PRSS50 -607951 gene 9702 CEP57 -607952 gene 6538 SLC6A11 -607953 gene 29114 TAGLN3 -607954 gene 29098 RANGRF -607955 gene 23328 SASH1 -607956 gene 112950 MED8 -607957 gene 57118 CAMK1D -607958 gene 29091 STXBP6 -607959 gene 56301 SLC7A10 -607960 gene 55760 DHX32 -607961 gene 8482 SEMA7A -607962 gene 407010 MIR23A -607963 gene 85509 MBD3L1 -607964 gene 125997 MBD3L2 -607965 phenotype 192677 SLEN1 -607966 phenotype 192679 SLEN2 -607967 phenotype 282849 SLEN3 -607968 gene 27241 BBS9 -607969 gene 57396 CLK4 -607970 gene 64582 GPR135 -607971 gene 55117 SLC6A15 -607972 gene 28968 SLC6A16 -607973 gene 81832 NETO1 -607974 gene 81831 NETO2 -607975 gene 29948 OSGIN1 -607976 gene 84701 COX4I2 -607977 gene 51696 HECA -607978 gene 64092 SAMSN1 -607979 gene 94009 SERHL -607980 gene 54543 TOMM7 -607981 gene 51667 NUB1 -607982 gene 57410 SCYL1 -607983 gene 92344 GORAB -607984 gene 81848 SPRY4 -607985 gene 51172 NAGPA -607986 gene 57402 S100A14 -607987 gene 54431 DNAJC10 -607988 gene 9806 SPOCK2 -607989 gene 50859 SPOCK3 -607990 gene 29128 UHRF1 -607991 gene 6547 SLC8A3 -607992 gene 57794 SUGP1 -607993 gene 10147 SUGP2 -607994 gene 54464 XRN1 -607995 gene 54346 UNC93A -607996 gene 256933 NPB -607997 gene 283869 NPW -607998 gene 1200 TPP1 -607999 gene 55870 ASH1L -608000 gene 80155 NAA15 -608001 gene 117153 MIA2 -608002 gene 27031 NPHP3 -608003 gene 204851 HIPK1 -608004 gene 64332 NFKBIZ -608005 gene 64374 SIL1 -608006 gene 442721 LMOD2 -608007 gene 26499 PLEK2 -608008 gene 11199 ANXA10 -608009 gene 26289 AK5 -608010 gene/phenotype 29881 NPC1L1 -608011 gene 26354 GNL3 -608012 gene 64714 PDIA2 -608013 phenotype - - -608014 gene 26353 HSPB8 -608015 gene 25987 TSKU -608016 gene 51287 COA4 -608017 gene 26355 FAM162A -608018 gene 83886 PRSS27 -608019 gene 79931 TNIP3 -608020 gene 4925 NUCB2 -608021 gene 117166 WFIKKN1 -608022 phenotype - - -608023 gene 54606 DDX56 -608024 gene 10455 ECI2 -608025 gene 51594 NBAS -608026 phenotype 574045 - -608027 phenotype 373073 CLAM -608028 predominantly phenotypes - - -608029 phenotype 1167 CLA3 -608030 phenotype - - -608031 phenotype 406238 ALS7 -608032 moved/removed - - -608033 phenotype - - -608034 gene 443 ASPA -608035 phenotype 474388 - -608036 phenotype 100188782 - -608037 gene 54480 CHPF2 -608038 gene 57144 PAK7 -608039 gene 83890 SPATA9 -608040 gene 80173 IFT74 -608041 gene 118429 ANTXR2 -608042 gene 84958 SYTL1 -608043 gene 55568 GALNT10 -608044 gene 160728 SLC5A8 -608045 phenotype 404685 - -608046 gene 84447 SYVN1 -608047 gene 89910 UBE3B -608048 gene 257218 SHPRH -608049 phenotype 387577 - -608050 gene 27348 TOR1B -608051 phenotype - - -608052 gene 27433 TOR2A -608053 gene 2108 ETFA -608054 gene 1549 CYP2A7 -608055 gene 1553 CYP2A13 -608056 moved/removed - - -608057 gene 58511 DNASE2B -608058 gene 57818 G6PC2 -608059 gene 84667 HES7 -608060 gene 57801 HES4 -608061 gene 10452 TOMM40 -608062 gene 341019 DCDC1 -608063 predominantly phenotypes - - -608064 gene 51088 KLHL5 -608065 gene 55089 SLC38A4 -608066 gene 9667 SAFB2 -608067 gene 64326 RFWD2 -608068 phenotype - - -608069 gene 54206 ERRFI1 -608070 gene 9709 HERPUD1 -608071 gene 6468 FBXW4 -608072 gene 378884 NHLRC1 -608073 gene 10361 NPM2 -608074 gene 10015 PDCD6IP -608075 gene 89869 PLCZ1 -608076 gene 8711 TNK1 -608077 gene 9127 P2RX6 -608078 phenotype 404686 - -608079 gene 55520 ELAC1 -608080 gene 83876 MRO -608081 gene 83849 SYT15 -608082 gene 29799 YPEL1 -608083 gene 344 APOC2 -608084 gene 170575 GIMAP1 -608085 gene 26157 GIMAP2 -608086 gene 55340 GIMAP5 -608087 gene 55303 GIMAP4 -608088 phenotype 378888 - -608089 phenotype - - -608090 gene 22877 MLXIP -608091 phenotype - - -608092 gene 23022 PALLD -608093 phenotype - - -608094 gene 54020 SLC37A1 -608095 gene 79005 SCNM1 -608096 phenotype 619399 - -608097 phenotype - - -608098 phenotype 100302681 - -608099 phenotype - - -608100 gene 27247 NFU1 -608101 gene 373861 HILS1 -608102 gene 1203 CLN5 -608103 gene 79053 ALG8 -608104 phenotype - - -608105 phenotype 574044 - -608106 phenotype - - -608107 gene 4210 MEFV -608108 gene 10428 CFDP1 -608109 gene 80324 PUS1 -608110 gene 56924 PAK6 -608111 gene 55120 FANCL -608112 gene 22906 TRAK1 -608113 gene 137868 SGCZ -608114 gene 11033 ADAP1 -608115 phenotype - - -608116 gene 57467 HHATL -608117 gene 9659 PDE4DIP -608118 phenotype - - -608119 gene 57594 HOMEZ -608120 gene 55742 PARVA -608121 gene 29780 PARVB -608122 gene 64098 PARVG -608123 gene 10005 ACOT8 -608124 gene 64131 XYLT1 -608125 gene 64132 XYLT2 -608126 gene 11169 WDHD1 -608127 gene 80714 PBX4 -608128 moved/removed - - -608129 gene 10422 UBAC1 -608130 gene 9891 NUAK1 -608131 gene 81788 NUAK2 -608132 gene 123016 TTC8 -608133 phenotype - - -608134 gene 5064 PALM -608135 gene 54829 ASPN -608136 gene 9639 ARHGEF10 -608137 gene 26012 NSMF -608138 gene 10081 PDCD7 -608139 gene 201161 CENPV -608140 gene 129401 NUP35 -608141 gene 348995 NUP43 -608142 gene 150274 HSCB -608143 gene 137964 AGPAT6 -608144 gene 25803 SPDEF -608145 gene 123606 NIPA1 -608146 gene 81614 NIPA2 -608147 gene 114791 TUBGCP5 -608148 gene 23314 SATB2 -608149 phenotype - - -608150 gene 51535 PPHLN1 -608151 gene 57728 WDR19 -608152 gene 80142 PTGES2 -608153 gene 94274 PPP1R14A -608154 phenotype - - -608155 gene 11346 SYNPO -608156 phenotype - - -608157 gene 83884 SLC25A2 -608158 phenotype - - -608159 gene 10942 PRSS21 -608160 gene 6662 SOX9 -608161 phenotype - - -608162 gene 79679 VTCN1 -608163 gene 23265 EXOC7 -608164 gene 27012 KCNV1 -608165 gene 51454 GULP1 -608166 gene 9723 SEMA3E -608167 gene 57582 KCNT1 -608168 gene 81033 KCNH6 -608169 gene 90134 KCNH7 -608170 gene 51428 DDX41 -608171 gene 93589 CACNA2D4 -608172 gene 79947 DHDDS -608173 phenotype 387578 - -608174 phenotype 387579 - -608175 phenotype - - -608176 phenotype 387581 - -608177 gene 2131 EXT1 -608178 gene 338645 LUZP2 -608179 gene 85300 ATCAY -608180 phenotype - - -608181 gene 51324 SPG21 -608182 gene 80333 KCNIP4 -608183 gene 22856 CHSY1 -608184 predominantly phenotypes - - -608185 gene 60412 EXOC4 -608186 gene 11336 EXOC3 -608187 gene 84515 MCM8 -608188 gene 54675 CRLS1 -608189 phenotype - - -608190 gene 51471 NAT8B -608191 gene 57786 RBAK -608192 gene 57147 SCYL3 -608193 gene 9985 REC8 -608194 phenotype - - -608195 gene 55227 LRRC1 -608196 gene 56897 WRNIP1 -608197 gene 114771 PGLYRP3 -608198 gene 57115 PGLYRP4 -608199 gene 114770 PGLYRP2 -608200 gene 51654 CDK5RAP1 -608201 gene 55755 CDK5RAP2 -608202 gene 80279 CDK5RAP3 -608203 phenotype - - -608204 gene 81622 UNC93B1 -608205 gene 51102 MECR -608206 gene 79628 SH3TC2 -608207 phenotype 387582 - -608208 gene 57574 MARCH4 -608209 gene 57628 DPP10 -608210 gene 2132 EXT2 -608211 gene 353219 KAAG1 -608212 gene 345611 IRGM -608213 gene 51286 CEND1 -608214 gene 55800 SCN3B -608215 gene 26468 LHX6 -608216 gene 28991 COMMD5 -608217 phenotype - - -608218 gene 54474 KRT20 -608219 phenotype 337991 DFNB38 -608220 phenotype 387583 SPG25 -608221 gene 84930 MASTL -608222 gene 158 ADSL -608223 predominantly phenotypes - - -608224 phenotype - - -608225 gene 79623 GALNT14 -608226 gene 340719 NANOS1 -608227 predominantly phenotypes - - -608228 gene 339345 NANOS2 -608229 gene 342977 NANOS3 -608230 gene 8911 CACNA1I -608231 gene 11228 RASSF8 -608232 phenotype - - -608233 phenotype - - -608234 gene 89792 GAL3ST3 -608235 gene 79690 GAL3ST4 -608236 phenotype - - -608237 gene 64090 GAL3ST2 -608238 gene 84888 SPPL2A -608239 gene 56928 SPPL2B -608240 gene 121665 SPPL3 -608241 gene 79753 SNIP1 -608242 gene 51191 HERC5 -608243 gene 56160 NDNL2 -608244 phenotype 170532 OTSC3 -608245 gene 112802 KRT71 -608246 gene 140807 KRT72 -608247 gene 319101 KRT73 -608248 gene 121391 KRT74 -608249 gene 57820 CCNB1IP1 -608250 gene 64426 SUDS3 -608251 phenotype 404684 - -608252 gene 60312 AFAP1 -608253 gene 60385 TSKS -608254 gene 22976 PAXIP1 -608255 gene 80342 TRAF3IP3 -608256 gene 6330 SCN4B -608257 predominantly phenotypes - - -608258 gene 91039 DPP9 -608259 gene 10643 IGF2BP3 -608260 gene 131096 KCNH8 -608261 gene 59343 SENP2 -608262 gene 729582 DIRC3 -608263 gene 79663 HSPBAP1 -608264 phenotype 379003 DFNB40 -608265 phenotype - - -608266 phenotype - - -608267 gene 64121 RRAGC -608268 gene 58528 RRAGD -608269 gene 64078 SLC28A3 -608270 gene 55617 TASP1 -608271 gene 23499 MACF1 -608272 gene 4758 NEU1 -608273 gene 246778 IL27 -608274 gene 55170 PRMT6 -608275 gene 55356 SLC22A15 -608276 gene 85413 SLC22A16 -608277 gene 51363 CHST15 -608278 predominantly phenotypes - - -608279 predominantly phenotypes - - -608280 gene 60674 GAS5 -608281 predominantly phenotypes - - -608282 gene 134860 TAAR9 -608283 gene 55605 KIF21A -608284 gene 162540 SPPL2C -608285 gene 55191 NADSYN1 -608286 gene 57575 PCDH10 -608287 gene 54510 PCDH18 -608288 gene 10642 IGF2BP1 -608289 gene 10644 IGF2BP2 -608290 phenotype - - -608291 gene 150465 TTL -608292 gene 30968 STOML2 -608293 gene 55114 ARHGAP17 -608294 gene 10201 NME6 -608295 gene 11170 FAM107A -608296 gene 9158 FIBP -608297 moved/removed - - -608298 gene 151887 CCDC80 -608299 gene 80196 RNF34 -608300 gene 162417 NAGS -608301 gene 55203 LGI2 -608302 gene 203190 LGI3 -608303 gene 163175 LGI4 -608304 gene 285782 CAGE1 -608305 gene 284111 SLC13A5 -608306 gene 221833 SP8 -608307 gene/phenotype 1373 CPS1 -608308 gene 80325 ABTB1 -608309 gene 65018 PINK1 -608310 gene 435 ASL -608311 gene 339970 GCOM2 -608312 gene 221830 TWISTNB -608313 gene 383 ARG1 -608314 gene 55964 SEPT3 -608315 gene 85403 EAF1 -608316 phenotype 387584 - -608317 gene 57822 GRHL3 -608318 phenotype 387585 - -608319 moved/removed - - -608320 phenotype - - -608321 gene 353376 TICAM2 -608322 gene 23046 KIF21B -608323 phenotype - - -608324 gene 85027 SMIM3 -608325 gene 51317 PHF21A -608326 gene 9399 STOML1 -608327 gene 161003 STOML3 -608328 phenotype - - -608329 gene 745 MYRF -608330 gene 27339 PRPF19 -608331 gene 153201 SLC36A2 -608332 gene 285641 SLC36A3 -608333 gene 55715 DOK4 -608334 gene 55816 DOK5 -608335 gene 51177 PLEKHO1 -608336 gene 131601 TPRA1 -608337 gene 55611 OTUB1 -608338 gene 78990 OTUB2 -608339 gene 6814 STXBP3 -608340 phenotype - - -608341 gene 51706 CYB5R1 -608342 gene 51700 CYB5R2 -608343 gene 51167 CYB5R4 -608344 gene 94086 HSPB9 -608345 phenotype 4934 NYS3 -608346 moved/removed - - -608347 gene 51181 DCXR -608348 gene 593 BCKDHA -608349 gene 84941 HSH2D -608350 gene 51705 EMCN -608351 gene 152404 IGSF11 -608352 gene 84519 ACRBP -608353 gene 113451 ADC -608354 phenotype - - -608355 phenotype - - -608356 gene 113746 ODF3 -608357 gene 27233 SULT1C4 -608358 phenotype - - -608359 gene 25830 SULT4A1 -608360 gene 56262 LRRC8A -608361 phenotype - - -608362 gene 50861 STMN3 -608363 phenotype - - -608364 gene 51474 LIMA1 -608365 gene 140290 TCP10L -608366 gene 57214 CEMIP -608367 phenotype 100359401 MYP17 -608368 gene 144715 RAD9B -608369 gene 114805 GALNT13 -608370 gene 79966 SCD5 -608371 phenotype 474387 - -608372 phenotype 317664 DFNA49 -608373 gene 23546 SYNGR4 -608374 gene 148738 HFE2 -608375 gene 9829 DNAJC6 -608376 gene 54788 DNAJB12 -608377 gene 55738 ARFGAP1 -608378 gene 9147 NEMF -608379 gene 9034 CCRL2 -608380 phenotype - - -608381 gene 375298 CERKL -608382 gene 9093 DNAJA3 -608383 gene 56896 DPYSL5 -608384 gene 56169 GSDMC -608385 gene 84951 TNS4 -608386 gene 113091 PTH2 -608387 gene 7760 ZNF213 -608388 gene 51295 ECSIT -608389 phenotype - - -608390 phenotype - - -608391 phenotype 378426 AIS2 -608392 phenotype 378427 AIS3 -608393 phenotype - - -608394 phenotype 192676 DFNA43 -608395 moved/removed - - -608396 gene 285195 SLC9A9 -608397 gene 64478 CSMD1 -608398 gene 114784 CSMD2 -608399 gene 114788 CSMD3 -608400 gene 7399 USH2A -608401 gene 643680 MS4A4E -608402 gene 245802 MS4A6E -608403 gene 341116 MS4A10 -608404 phenotype - - -608405 gene 84680 ACCS -608406 predominantly phenotypes - - -608407 gene 10570 DPYSL4 -608408 gene 359787 DPPA3 -608409 gene 84419 C15orf48 -608410 phenotype 404683 - -608411 gene 23214 XPO6 -608412 gene 65056 GPBP1 -608413 gene 51366 UBR5 -608414 gene 51196 PLCE1 -608415 phenotype - - -608416 gene 118856 MMP21 -608417 gene 79148 MMP28 -608418 gene 23176 SEPT8 -608419 gene 84693 MCEE -608420 gene 24145 PANX1 -608421 gene 56666 PANX2 -608422 gene 116337 PANX3 -608423 phenotype - - -608424 gene 140453 MUC17 -608425 gene 64122 FN3K -608426 gene 23609 MKRN2 -608427 gene 135138 PACRG -608428 gene 340665 CYP26C1 -608429 gene 113189 CHST14 -608430 gene 26133 TRPC4AP -608431 gene 10146 G3BP1 -608432 predominantly phenotypes - - -608433 gene 10472 ZBTB18 -608434 gene 28964 GIT1 -608435 gene 22808 MRAS -608436 gene 27284 SULT1B1 -608437 phenotype 404714 - -608438 gene 9874 TLK1 -608439 gene 11011 TLK2 -608440 gene 114294 LACTB -608441 gene 23345 SYNE1 -608442 gene 23224 SYNE2 -608443 phenotype - - -608444 gene 55904 KMT2E -608445 phenotype 404713 - -608446 phenotype - - -608447 phenotype 404677 - -608448 phenotype 317669 IBD9 -608449 gene 58155 PTBP2 -608450 gene 338436 BLACE -608451 gene 23474 ETHE1 -608452 gene 56034 PDGFC -608453 gene 23624 CBLC -608454 moved/removed - - -608455 gene 5837 PYGM -608456 phenotype - - -608457 gene 23492 CBX7 -608458 gene 23154 NCDN -608459 gene 51265 CDKL3 -608460 gene 92822 ZNF276 -608461 gene 85301 COL27A1 -608462 phenotype 404719 - -608463 gene 26574 AATF -608464 gene 55109 AGGF1 -608465 gene 23064 SETX -608466 gene 10598 AHSA1 -608467 gene 85439 STON2 -608468 gene 25819 CCRN4L -608469 gene 10521 DDX17 -608470 phenotype - - -608471 phenotype - - -608472 gene 84620 ST6GAL2 -608473 gene 64682 ANAPC1 -608474 phenotype 404682 MYP5 -608475 gene 11112 HIBADH -608476 gene 9755 TBKBP1 -608477 gene 22977 AKR7A3 -608478 gene 246181 AKR7L -608479 gene 115111 SLC26A7 -608480 gene 116369 SLC26A8 -608481 gene 115019 SLC26A9 -608482 gene 64386 MMP25 -608483 gene 64400 AKTIP -608484 predominantly phenotypes - - -608485 gene 9697 TRAM2 -608486 gene 9788 MTSS1 -608487 gene 85363 TRIM5 -608488 gene 64093 SMOC1 -608489 gene 10734 STAG3 -608490 gene 81539 SLC38A1 -608491 gene 9988 DMTF1 -608492 gene 338674 OR5F1 -608493 gene 144124 OR10A5 -608494 gene 120776 OR2D2 -608495 gene 8590 OR6A2 -608496 gene 10798 OR5I1 -608497 gene 26211 OR2F1 -608498 gene 11055 ZPBP -608499 gene 124626 ZPBP2 -608500 gene 144165 PRICKLE1 -608501 gene 166336 PRICKLE2 -608502 gene 54039 PCBP3 -608503 gene 57060 PCBP4 -608504 gene 22899 ARHGEF15 -608505 moved/removed - - -608506 gene 55669 MFN1 -608507 gene 9927 MFN2 -608508 gene/phenotype 1535 CYBA -608509 predominantly phenotypes - - -608510 gene 117157 SH2D1B -608511 gene 9796 PHYHIP -608512 gene 653361 NCF1 -608513 gene 85495 RPPH1 -608514 gene 51390 AIG1 -608515 gene 4688 NCF2 -608516 phenotype - - -608517 gene 84665 MYPN -608518 predominantly phenotypes - - -608519 gene 157574 FBXO16 -608520 phenotype 431708 - -608521 gene 10542 LAMTOR5 -608522 gene 51773 RSF1 -608523 gene 64150 DIO3OS -608524 gene 51147 ING4 -608525 gene 84289 ING5 -608526 phenotype 406237 - -608527 gene 129807 NEU4 -608528 gene 128869 PIGU -608529 gene 84467 FBN3 -608530 gene 53339 BTBD1 -608531 gene 55643 BTBD2 -608532 gene 54892 NCAPG2 -608533 gene 81545 FBXO38 -608534 gene 84517 ACTRT3 -608535 gene 140625 ACTRT2 -608536 gene 84705 GTPBP3 -608537 gene 7428 VHL -608538 gene 84159 ARID5B -608539 gene 84662 GLIS2 -608540 phenotype - - -608541 gene 9743 ARHGAP32 -608542 phenotype 449013 ANIB2 -608543 phenotype 619488 - -608544 gene 83933 HDAC10 -608545 phenotype 406214 - -608546 gene 9775 EIF4A3 -608547 gene 79001 VKORC1 -608548 gene 83872 HMCN1 -608549 gene 55823 VPS11 -608550 gene 64601 VPS16 -608551 gene 57617 VPS18 -608552 gene 26276 VPS33B -608553 phenotype - - -608554 gene 266743 NPAS4 -608555 gene 10651 MTX2 -608556 phenotype - - -608557 phenotype 100233226 - -608558 phenotype 449016 BMIQ5 -608559 phenotype 449017 BMIQ6 -608560 gene 23166 STAB1 -608561 gene 55576 STAB2 -608562 phenotype 450096 - -608563 moved/removed - - -608564 gene 9815 GIT2 -608565 phenotype - - -608566 gene 143662 MUC15 -608567 phenotype - - -608568 gene 79784 MYH14 -608569 phenotype - - -608570 gene 113146 AHNAK2 -608571 predominantly phenotypes - - -608572 phenotype - - -608573 moved/removed - - -608574 gene 56946 C11orf30 -608575 gene 50700 RDH8 -608576 gene 79977 GRHL2 -608577 gene 91612 CHURC1 -608578 phenotype - - -608579 phenotype - - -608580 predominantly phenotypes 84176 MYH16 -608581 gene 94137 RP1L1 -608582 gene 51162 EGFL7 -608583 phenotype 406216 - -608584 phenotype - - -608585 phenotype - - -608586 phenotype 406215 - -608587 gene 84514 GHDC -608588 gene 79132 DHX58 -608589 gene 89886 SLAMF9 -608590 moved/removed - - -608591 phenotype 431712 - -608592 gene 10217 CTDSPL -608593 gene 81494 CFHR5 -608594 phenotype - - -608595 gene 387129 NPSR1 -608596 gene 404744 NPSR1-AS1 -608597 gene 140825 NEURL2 -608598 gene 255082 CASC2 -608599 gene 22841 RAB11FIP2 -608600 phenotype - - -608601 gene 64319 FBRS -608602 gene 11262 SP140 -608603 gene 342035 GLDN -608604 gene 116362 RBP7 -608605 gene 201595 STT3B -608606 gene 168620 BHLHA15 -608607 gene 149013 NBPF12 -608608 gene 730262 PPIAL4E -608609 gene 767846 PFN1P2 -608610 gene 27250 PDCD4 -608611 phenotype - - -608612 phenotype - - -608613 gene 80320 SP6 -608614 gene 285440 CYP4V2 -608615 phenotype - - -608616 gene 84033 OBSCN -608617 gene 54097 FAM3B -608618 gene 10447 FAM3C -608619 gene 131177 FAM3D -608620 moved/removed - - -608621 gene 53340 SPA17 -608622 phenotype - - -608623 moved/removed - - -608624 predominantly phenotypes - - -608625 gene 51651 PTRH2 -608626 gene 92335 STRADA -608627 phenotype - - -608628 gene 79718 TBL1XR1 -608629 phenotype - - -608630 gene 64221 ROBO3 -608631 phenotype 431711 - -608632 gene 406972 MIR196A1 -608633 gene 100506742 CASP12 -608634 phenotype - - -608635 gene 55803 ADAP2 -608636 phenotype - - -608637 moved/removed - - -608638 phenotype 431710 - -608639 gene 84725 PLEKHA8 -608640 gene 92283 ZNF461 -608641 phenotype - - -608642 gene 145482 PTGR2 -608643 phenotype - - -608644 phenotype - - -608645 phenotype 347737 DFNA31 -608646 phenotype 408257 - -608647 phenotype - - -608648 gene 11231 SEC63 -608649 phenotype - - -608650 gene 9706 ULK2 -608651 gene 116987 AGAP1 -608652 phenotype 246289 DFNA47 -608653 phenotype 113877 DFNB32 -608654 phenotype - 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- -608841 gene 27151 CPAMD8 -608842 gene 118487 CHCHD1 -608843 gene 114990 VASN -608844 gene 79661 NEIL1 -608845 gene 84100 ARL6 -608846 gene 126129 CPT1C -608847 gene 94033 FTMT -608848 gene 54874 FNBP1L -608849 gene 127933 UHMK1 -608850 phenotype 317668 MCDR3 -608851 gene 22803 XRN2 -608852 phenotype 450095 - -608853 gene 414899 BLID -608854 gene 127700 OSCP1 -608855 gene 94015 TTYH2 -608856 gene 64693 CTAGE1 -608857 gene 220112 CTAGE3P -608858 gene 26127 FGFR1OP2 -608859 gene 135228 CD109 -608860 gene 431705 ASTL -608861 gene 51606 ATP6V1H -608862 gene 128240 APOA1BP -608863 gene 10630 PDPN -608864 phenotype - - -608865 gene 9875 URB1 -608866 gene/phenotype 118924 FRA10AC1 -608867 gene 11221 DUSP10 -608868 gene 26018 LRIG1 -608869 gene 9860 LRIG2 -608870 gene 121227 LRIG3 -608871 gene 25934 NIPSNAP3A -608872 gene 55335 NIPSNAP3B -608873 gene 10501 SEMA6B -608874 phenotype - - -608875 phenotype 474334 - -608876 gene 51585 PCF11 -608877 gene 55187 VPS13D -608878 phenotype 474333 - -608879 gene 54832 VPS13C -608880 gene 9765 ZFYVE16 -608881 gene 9645 MICAL2 -608882 gene 57553 MICAL3 -608883 gene 130589 GALM -608884 gene 253959 RALGAPA1 -608885 predominantly phenotypes - - -608886 gene 133522 PPARGC1B -608887 gene 5814 PURB -608888 gene 129831 RBM45 -608889 gene 130013 ACMSD -608890 phenotype - - -608891 gene 130497 OSR1 -608892 gene 55636 CHD7 -608893 gene 340024 SLC6A19 -608894 gene 54806 AHI1 -608895 phenotype - - -608896 gene 6445 SGCG -608897 gene 201294 UNC13D -608898 phenotype - - -608899 gene 84163 GTF2IRD2 -608900 gene 389524 GTF2IRD2B -608901 phenotype - - -608902 phenotype - - -608903 phenotype 450087 - -608904 phenotype 450088 - -608905 phenotype 450089 - -608906 phenotype 450090 - -608907 phenotype 450086 - -608908 phenotype - - -608909 gene 221079 ARL5B -608910 gene 100128553 CTAGE4 -608911 phenotype - - -608912 gene 100996331 POTEB -608913 gene 23784 POTEH -608914 gene 445582 POTEE -608915 gene 340441 POTEA -608916 gene 404785 POTEG -608917 gene 64756 ATPAF1 -608918 gene 91647 ATPAF2 -608919 gene 80727 TTYH3 -608920 gene 57605 PITPNM2 -608921 gene 83394 PITPNM3 -608922 gene 200894 ARL13B -608923 gene 319100 TAAR6 -608924 gene 116113 FOXP4 -608925 gene 79812 MMRN2 -608926 gene 129080 EMID1 -608927 gene 136227 COL26A1 -608928 gene 84034 EMILIN2 -608929 gene 90187 EMILIN3 -608930 phenotype - 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-608971 phenotype - - -608972 gene 200186 CRTC2 -608973 gene 23235 SIK2 -608974 gene 51279 C1RL -608975 gene 84612 PARD6B -608976 gene 84552 PARD6G -608977 gene 131118 DNAJC19 -608978 phenotype - - -608979 gene 132160 PPM1M -608980 phenotype - - -608981 gene 130399 ACVR1C -608982 phenotype 619479 - -608983 moved/removed - - -608984 phenotype - - -608985 gene 6045 RNF2 -608986 gene 64784 CRTC3 -608987 gene 283208 P4HA3 -608988 phenotype 619478 - -608989 gene 195814 SDR16C5 -608990 gene 81794 ADAMTS10 -608991 gene 55534 MAML3 -608992 gene 255877 BCL6B -608993 gene 200316 APOBEC3F -608994 gene 23294 ANKS1A -608995 phenotype 406874 DYX8 -608996 phenotype - - -608997 moved/removed - - -608998 gene 7260 TSSC1 -608999 gene 7261 TSSC2 -609000 gene 26002 MOXD1 -609001 gene 5288 PIK3C2G -609002 gene 83659 TEKT1 -609003 gene 51024 FIS1 -609004 gene 283149 BCL9L -609005 gene 116966 WDR17 -609006 phenotype - - -609007 gene 120892 LRRK2 -609008 predominantly phenotypes - - -609009 gene 10971 YWHAQ -609010 gene 56922 MCCC1 -609011 gene 22846 VASH1 -609012 gene 11091 WDR5 -609013 gene 353189 SLCO4C1 -609014 gene 64087 MCCC2 -609015 phenotype - - -609016 phenotype - - -609017 gene 114625 ERMAP -609018 gene 3141 HLCS -609019 gene 686 BTD -609020 gene 219595 FOLH1B -609021 phenotype - - -609022 gene 253260 RICTOR -609023 gene 25953 PNKD -609024 gene 11014 KDELR2 -609025 gene 9119 KRT75 -609026 phenotype 493862 - -609027 phenotype - - -609028 gene 92610 TIFA -609029 phenotype - - -609030 gene 54487 DGCR8 -609031 gene 57119 EPPIN -609032 gene 448831 FRG2 -609033 phenotype - - -609034 gene 26508 HEYL -609035 gene 65059 RAPH1 -609036 gene 54518 APBB1IP -609037 predominantly phenotypes - - -609038 gene 27289 RND1 -609039 phenotype 494446 - -609040 phenotype - - -609041 phenotype 414886 SPG27 -609042 gene 221391 OPN5 -609043 gene 339403 RXFP4 -609044 gene 338557 FFAR4 -609045 gene 353345 GPR141 -609046 gene 350383 GPR142 -609047 predominantly phenotypes - - -609048 phenotype - - -609049 phenotype - - -609050 gene 57504 MTA3 -609051 gene 22900 CARD8 -609052 phenotype - - -609053 phenotype - - -609054 phenotype - - -609055 phenotype 497231 CLN9 -609056 phenotype - - -609057 phenotype - - -609058 gene 4594 MUT -609059 gene 57104 PNPLA2 -609060 phenotype - - -609061 gene 55740 ENAH -609062 gene 11281 POU6F2 -609063 gene 25828 TXN2 -609064 gene 84735 CNDP1 -609065 moved/removed - - -609066 gene 84962 AJUBA -609067 gene 100129885 SCXA -609068 gene 199699 DAND5 -609069 phenotype - - -609070 phenotype - - -609071 gene 26190 FBXW2 -609072 gene 54461 FBXW5 -609073 gene 26259 FBXW8 -609074 gene 84261 FBXW9 -609075 gene 285231 FBXW12 -609076 gene 26233 FBXL6 -609077 gene 55336 FBXL8 -609078 gene 84678 KDM2B -609079 gene 54850 FBXL12 -609080 gene 222235 FBXL13 -609081 gene 144699 FBXL14 -609082 gene 146330 FBXL16 -609083 gene 64839 FBXL17 -609084 gene 80028 FBXL18 -609085 gene 54620 FBXL19 -609086 gene 84961 FBXL20 -609087 gene 26223 FBXL21 -609088 gene 283807 FBXL22 -609089 gene 26273 FBXO3 -609090 gene 26272 FBXO4 -609091 gene 26268 FBXO9 -609092 gene 26267 FBXO10 -609093 gene 201456 FBXO15 -609094 gene 115290 FBXO17 -609095 gene 23014 FBXO21 -609096 gene 26263 FBXO22 -609097 gene 26261 FBXO24 -609098 gene 26260 FBXO25 -609099 gene 126433 FBXO27 -609100 gene 23219 FBXO28 -609101 gene 84085 FBXO30 -609102 gene 79791 FBXO31 -609103 gene 254170 FBXO33 -609104 gene 55030 FBXO34 -609105 gene 130888 FBXO36 -609106 gene 162517 FBXO39 -609107 gene 51725 FBXO40 -609108 gene 150726 FBXO41 -609109 gene 54455 FBXO42 -609110 gene 286151 FBXO43 -609111 gene 93611 FBXO44 -609112 gene 200933 FBXO45 -609113 phenotype 550641 - -609114 gene 11034 DSTN -609115 phenotype 553991 LGMD1G -609116 phenotype 497662 - -609117 gene 23403 FBXO46 -609118 gene 11235 PDCD10 -609119 gene 57215 THAP11 -609120 gene 347732 CATSPER3 -609121 gene 378807 CATSPER4 -609122 phenotype 497657 ANIB3 -609123 gene 79895 ATP8B4 -609124 gene 25946 ZNF385A -609125 gene 64598 MOSPD3 -609126 gene 10079 ATP9A -609127 moved/removed - - -609128 phenotype 100188695 - -609129 phenotype - - -609130 gene 378708 APITD1 -609131 gene 1366 CLDN7 -609132 gene 23028 KDM1A -609133 gene 84922 FIZ1 -609134 gene 23304 UBR2 -609135 phenotype - - -609136 phenotype - - -609137 gene 132112 RTP1 -609138 gene 344892 RTP2 -609139 gene 65055 REEP1 -609140 phenotype - - -609141 phenotype - - -609142 gene 1084 CEACAM3 -609143 phenotype - - -609144 gene 28982 FLVCR1 -609145 gene 23114 NFASC -609146 gene 60626 RIC8A -609147 gene 55188 RIC8B -609148 phenotype - - -609149 gene 222962 SLC29A4 -609150 gene 30827 CXXC1 -609151 gene 91544 UBXN11 -609152 phenotype - - -609153 phenotype 541461 - -609154 gene 56676 ASCL3 -609155 gene 121549 ASCL4 -609156 gene 56926 NCLN -609157 gene 23420 NOMO1 -609158 gene 283820 NOMO2 -609159 gene 408050 NOMO3 -609160 moved/removed - - -609161 phenotype - - -609162 phenotype - - -609163 gene 338442 HCAR2 -609164 phenotype - - -609165 phenotype - - -609166 phenotype - - -609167 moved/removed - - -609168 gene 151648 SGOL1 -609169 gene 26330 GAPDHS -609170 gene 23071 ERP44 -609171 gene 148170 CDC42EP5 -609172 gene 84988 PPP1R16A -609173 gene 57082 CASC5 -609174 gene 25936 NSL1 -609175 gene 79980 DSN1 -609176 gene 11243 PMF1 -609177 gene 11130 ZWINT -609178 gene 79003 MIS12 -609179 phenotype 553992 - -609180 phenotype - - -609181 gene 8798 DYRK4 -609182 gene 11046 SLC35D2 -609183 gene 54998 AURKAIP1 -609184 gene 285643 KIF4B -609185 gene 22882 ZHX2 -609186 gene 728294 D2HGDH -609187 gene 79783 SUGCT -609188 gene 136647 MPLKIP -609189 gene 25842 ASF1A -609190 gene 55723 ASF1B -609191 gene 56672 AKIP1 -609192 phenotype - - -609193 gene 122769 LRR1 -609194 gene 91768 CABLES1 -609195 phenotype - 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- -609284 phenotype - - -609285 phenotype - - -609286 phenotype - - -609287 gene 51100 SH3GLB1 -609288 gene 56904 SH3GLB2 -609289 predominantly phenotypes - - -609290 gene 50808 AK3 -609291 gene 161742 SPRED1 -609292 gene 200734 SPRED2 -609293 gene 399473 SPRED3 -609294 gene 10500 SEMA6C -609295 gene 80031 SEMA6D -609296 phenotype - - -609297 gene 9037 SEMA5A -609298 gene 54437 SEMA5B -609299 phenotype 619402 - -609300 gene 1586 CYP17A1 -609301 gene 64065 PERP -609302 gene 79751 SLC25A22 -609303 gene 83733 SLC25A18 -609304 phenotype - - -609305 gene 56925 LXN -609306 phenotype - - -609307 phenotype - - -609308 phenotype - - -609309 gene 4436 MSH2 -609310 phenotype - - -609311 phenotype - - -609312 gene 1621 DBH -609313 phenotype - - -609314 gene 89765 RSPH1 -609315 gene 81786 TRIM7 -609316 gene 11074 TRIM31 -609317 gene 55521 TRIM36 -609318 gene 80263 TRIM45 -609319 phenotype 100381204 - -609320 phenotype 100381205 - -609321 gene 163786 SASS6 -609322 phenotype - - -609323 gene 167826 OLIG3 -609324 phenotype - 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- -609497 gene 64167 ERAP2 -609498 gene 494188 FBXO47 -609499 gene 23263 MCF2L -609500 phenotype - - -609501 gene 11022 TDRKH -609502 gene 92211 CDHR1 -609503 gene 51298 THEG -609504 gene 10445 MCRS1 -609505 gene 10626 TRIM16 -609506 gene 1594 CYP27B1 -609507 gene 10210 TOPORS -609508 phenotype - - -609509 gene 386653 IL31 -609510 gene 133396 IL31RA -609511 gene 64145 ZFYVE20 -609512 gene 25978 CHMP2B -609513 gene 594857 NPS -609514 gene 129685 TAF8 -609515 predominantly phenotypes - - -609516 gene 84911 ZNF382 -609517 gene 9220 TIAF1 -609518 gene 80764 THAP7 -609519 gene 29844 TFPT -609520 gene 55145 THAP1 -609521 gene 7779 SLC30A1 -609522 gene 51224 TCEB3B -609523 gene 224 ALDH3A2 -609524 phenotype - - -609525 gene 79828 METTL8 -609526 gene 25894 PLEKHG4 -609527 gene 9771 RAPGEF5 -609528 phenotype - - -609529 phenotype - - -609530 gene 9693 RAPGEF2 -609531 gene 25780 RASGRP3 -609532 phenotype - - -609533 phenotype - - -609534 gene 79915 ATAD5 -609535 phenotype - - -609536 phenotype - 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-609579 phenotype - - -609580 gene 22981 NINL -609581 moved/removed - - -609582 gene 406906 MIR122 -609583 phenotype - - -609584 gene 79944 L2HGDH -609585 gene 594855 CPLX3 -609586 gene 339302 CPLX4 -609587 gene 55920 RCC2 -609588 gene 51218 GLRX5 -609589 gene 57509 MTUS1 -609590 gene 9444 QKI -609591 gene 6016 RIT1 -609592 gene 6014 RIT2 -609593 gene 55604 LRRC16A -609594 gene 79674 VEPH1 -609595 gene 284654 RSPO1 -609596 gene 27335 EIF3K -609597 phenotype - - -609598 gene 23051 ZHX3 -609599 gene 27063 ANKRD1 -609600 gene 252884 ZNF396 -609601 gene 84307 ZNF397 -609602 gene 128209 KLF17 -609603 gene 155051 CRYGN -609604 gene 81631 MAP1LC3B -609605 gene 440738 MAP1LC3C -609606 gene 64422 ATG3 -609607 gene 81607 PVRL4 -609608 gene 9140 ATG12 -609609 moved/removed - - -609610 gene 27229 TUBGCP4 -609611 gene 81611 ANP32E -609612 predominantly phenotypes - - -609613 gene 23207 PLEKHM2 -609614 gene 57455 REXO1 -609615 gene 81890 QTRT1 -609616 predominantly phenotypes - - -609617 gene 7780 SLC30A2 -609618 gene 641373 NRON -609619 gene 440270 GOLGA8B -609620 phenotype - 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-609671 gene 55240 STEAP3 -609672 gene 54536 EXOC6 -609673 gene 80310 PDGFD -609674 gene 114799 ESCO1 -609675 gene 25928 SOSTDC1 -609676 gene 57506 MAVS -609677 gene 10956 OS9 -609678 gene 114798 SLITRK1 -609679 gene 22865 SLITRK3 -609680 gene 26050 SLITRK5 -609681 gene 84189 SLITRK6 -609682 gene 9937 DCLRE1A -609683 gene 64858 DCLRE1B -609684 gene 114569 MAL2 -609685 gene 55536 CDCA7L -609686 gene 171425 CLYBL -609687 gene 406973 MIR196A2 -609688 gene 442920 MIR196B -609689 gene 11190 CEP250 -609690 gene 10056 FARSB -609691 gene 80206 FHOD3 -609692 gene 147179 WIPF2 -609693 gene 80737 VWA7 -609694 gene 51291 GMIP -609695 gene 3242 HPD -609696 gene 51742 ARID4B -609697 gene 79595 SAP130 -609698 phenotype - - -609699 gene 11343 MGLL -609700 gene 27342 RABGEF1 -609701 gene 4669 NAGLU -609702 gene 56984 PSMG2 -609703 gene 406948 MIR15A -609704 gene 406950 MIR16-1 -609705 gene 407012 MIR24-1 -609706 phenotype - - -609707 gene 54920 DUS2 -609708 gene/phenotype 4023 LPL -609709 gene 120071 GYLTL1B -609710 gene 140947 C5orf20 -609711 gene 10975 UQCR11 -609712 gene 5313 PKLR -609713 gene 135458 HUS1B -609714 gene 340205 TREML1 -609715 gene 79865 TREML2 -609716 gene 340206 TREML3P -609717 gene 118425 PCAT4 -609718 gene 10184 LHFPL2 -609719 gene 375612 LHFPL3 -609720 gene 286204 CRB2 -609721 gene 168507 PKD1L1 -609722 gene 64236 PDLIM2 -609723 gene 388403 YPEL2 -609724 gene 83719 YPEL3 -609725 gene 219539 YPEL4 -609726 gene 51646 YPEL5 -609727 phenotype 619379 SPG29 -609728 gene 92935 MARS2 -609729 gene 23024 PDZRN3 -609730 gene 29951 PDZRN4 -609731 gene 140880 CST11 -609732 gene 84708 LNX1 -609733 gene 222484 LNX2 -609734 phenotype - - -609735 gene 117584 RFFL -609736 gene 55704 CCDC88A -609737 gene 92359 CRB3 -609738 gene 57549 IGSF9 -609739 gene 286676 ILDR1 -609740 gene 26147 PHF19 -609741 phenotype - - -609742 gene 259307 IL4I1 -609743 gene 57863 CADM3 -609744 gene 199731 CADM4 -609745 phenotype 497188 GLC1I -609746 gene 79658 ARHGAP10 -609747 gene 137735 ABRA -609748 gene 84993 UBL7 -609749 gene 80146 UXS1 -609750 phenotype 780913 - -609751 gene 51 ACOX1 -609752 gene 135112 NCOA7 -609753 phenotype - - -609754 phenotype 317782 CELIAC2 -609755 phenotype - - -609756 gene 89832 CHRFAM7A -609757 phenotype - - -609758 gene 154215 NKAIN2 -609759 gene 11105 PRDM7 -609760 gene 56979 PRDM9 -609761 gene 11078 TRIOBP -609762 gene 388552 BLOC1S3 -609763 gene 55361 PI4K2A -609764 gene 9682 KDM4A -609765 gene 23030 KDM4B -609766 gene 55693 KDM4D -609767 gene 81894 SLC25A28 -609768 gene 282991 BLOC1S2 -609769 gene 121214 SDR9C7 -609770 gene 120425 AMICA1 -609771 gene 29855 UBN1 -609772 gene 83992 CTTNBP2 -609773 gene 163126 EID2 -609774 gene 8539 API5 -609775 gene 25844 YIPF3 -609776 gene 118471 PRAP1 -609777 gene 165904 XIRP1 -609778 gene 129446 XIRP2 -609779 gene 79858 NEK11 -609780 gene 54504 CPVL -609781 moved/removed - - -609782 phenotype 100505390 - -609783 gene 80760 ITIH5 -609784 gene 7342 UBP1 -609785 gene 29842 TFCP2L1 -609786 gene 29841 GRHL1 -609787 gene 51271 UBAP1 -609788 gene 143570 XRRA1 -609789 gene 375318 AQP12A -609790 phenotype 100188795 - -609791 gene 84894 LINGO1 -609792 gene 645191 LINGO3 -609793 gene 158038 LINGO2 -609794 gene 339398 LINGO4 -609795 gene 347148 QRFP -609796 phenotype - - -609797 gene 23299 BICD2 -609798 gene 91754 NEK9 -609799 gene 284086 NEK8 -609800 phenotype 100188796 - -609801 gene 342510 CD300E -609802 gene 283652 SLC24A5 -609803 gene 150709 ANKAR -609804 gene 146845 WDR16 -609805 gene 219938 SPATA19 -609806 gene 3145 HMBS -609807 gene 146722 CD300LF -609808 predominantly phenotypes - - -609809 gene 54923 LIME1 -609810 gene 23089 PEG10 -609811 gene 170712 COX7B2 -609812 phenotype - - -609813 phenotype - - -609814 phenotype - - -609815 phenotype 780914 - -609816 gene 65065 NBEAL1 -609817 phenotype - - -609818 gene 9100 USP10 -609819 gene 84366 PRAC1 -609820 phenotype - - -609821 phenotype - - -609822 phenotype 100037265 - -609823 phenotype - - -609824 gene 84072 HORMAD1 -609825 gene 27235 COQ2 -609826 gene 142680 SLC34A3 -609827 gene 246330 PELI3 -609828 gene 79187 FSD1 -609829 gene 83856 FSD1L -609830 moved/removed - - -609831 gene 25974 MMACHC -609832 gene 55244 SLC47A1 -609833 gene 146802 SLC47A2 -609834 gene 6419 SETMAR -609835 gene 84073 MYCBPAP -609836 gene 84105 PCBD2 -609837 gene 338433 SNORD115-1 -609838 gene 25769 SLC24A2 -609839 gene 57419 SLC24A3 -609840 gene 123041 SLC24A4 -609841 gene 80024 SLC8B1 -609842 gene 80153 EDC3 -609843 gene 196513 DCP1B -609844 gene 167227 DCP2 -609845 gene 6476 SI -609846 gene 83998 REG4 -609847 gene 147111 NOTUM -609848 gene 147040 KCTD11 -609849 gene 57175 CORO1B -609850 gene 23216 TBC1D1 -609851 gene 253430 IPMK -609852 gene 83881 MIXL1 -609853 gene 79717 PPCS -609854 gene 60490 PPCDC -609855 gene 80347 COASY -609856 gene 83893 SPATA16 -609857 gene 1762 DMWD -609858 gene 55500 ETNK1 -609859 gene 55224 ETNK2 -609860 gene 56286 DAD1P1 -609861 gene 121457 IKBIP -609862 gene 164656 TMPRSS6 -609863 gene 79600 TCTN1 -609864 gene 55529 TMEM55A -609865 gene 90809 TMEM55B -609866 gene 90627 STARD13 -609867 gene 134510 UBLCP1 -609868 gene 55812 SPATA7 -609869 gene 353324 SPATA12 -609870 gene 57584 ARHGAP21 -609871 gene 55357 TBC1D2 -609872 gene 128488 WFDC12 -609873 gene 55600 ITLN1 -609874 gene 142683 ITLN2 -609875 gene 220202 ATOH7 -609876 phenotype 100188797 - -609877 gene 51084 CRYL1 -609878 gene 55090 MED9 -609879 gene 132851 SPATA4 -609880 gene 11143 KAT7 -609881 gene 246721 POLR2J2 -609882 gene 22823 MTF2 -609883 gene 54903 MKS1 -609884 gene 91147 TMEM67 -609885 gene 80237 ELL3 -609886 phenotype - - -609887 phenotype - - -609888 phenotype 81861 - -609889 phenotype - - -609890 gene 23352 UBR4 -609891 gene 134701 RIPPLY2 -609892 gene 53820 RIPPLY3 -609893 phenotype 780915 - -609894 gene 23025 UNC13A -609895 gene 54897 CASZ1 -609896 gene 317649 EIF4E3 -609897 gene 80864 EGFL8 -609898 gene 83999 KREMEN1 -609899 gene 79412 KREMEN2 -609900 gene 140564 APOBEC3D -609901 gene 257629 ANKS4B -609902 moved/removed - - -609903 phenotype 100188798 - -609904 gene 255626 HIST1H2BA -609905 gene 10398 MYL9 -609906 gene 10278 EFS -609907 gene 223117 SEMA3D -609908 gene 403314 APOBEC4 -609909 phenotype - - -609910 gene 89876 MAATS1 -609911 gene 283600 SLC25A47 -609912 gene 84148 KAT8 -609913 phenotype 641433 RP32 -609914 gene 282679 AQP11 -609915 phenotype 664728 CMD1Q -609916 gene 64343 AZI2 -609917 gene 79033 ERI3 -609918 phenotype 100048905 GBD2 -609919 phenotype 100048906 GBD3 -609920 gene 64405 CDH22 -609921 gene 26020 LRP10 -609922 gene 23301 EHBP1 -609923 phenotype - - -609924 phenotype - - -609925 gene 64174 DPEP2 -609926 gene 64180 DPEP3 -609927 gene 137492 VPS37A -609928 gene 57644 MYH7B -609929 gene 22989 MYH15 -609930 gene 140465 MYL6B -609931 gene 4637 MYL6 -609932 gene 171169 SPACA4 -609933 gene 130120 REG3G -609934 gene 64641 EBF2 -609935 gene 57593 EBF4 -609936 gene 10927 SPIN1 -609937 gene 83879 CDCA7 -609938 gene 253559 CADM2 -609939 phenotype - - -609940 moved/removed - - -609941 phenotype 448963 DFNB51 -609942 phenotype - - -609943 predominantly phenotypes - - -609944 predominantly phenotypes - - -609945 predominantly phenotypes - - -609946 phenotype 449489 DFNB47 -609947 gene 9692 KIAA0391 -609948 gene 54476 RNF216 -609949 gene 27202 C5AR2 -609950 gene 125950 RAVER1 -609951 gene 171017 ZNF384 -609952 phenotype 494148 DFNB55 -609953 gene 55225 RAVER2 -609954 phenotype 100188800 - -609955 phenotype 780916 - -609956 gene 326624 RAB37 -609957 gene 333926 PPM1J -609958 phenotype 100188801 - -609959 gene 91663 MYADM -609960 gene 9933 KIAA0020 -609961 gene 57824 HMHB1 -609962 gene 26253 CLEC4E -609963 gene 337876 CHSY3 -609964 gene 338339 CLEC4D -609965 phenotype 353347 DFNA53 -609966 gene 199720 GGN -609967 gene 199786 FAM129C -609968 phenotype - - -609969 gene 374897 SBSN -609970 gene 54626 HES2 -609971 gene 390992 HES3 -609972 gene 10965 ACOT2 -609973 gene 57657 HCN3 -609974 gene 1007 CDH9 -609975 phenotype - - -609976 gene 64344 HIF3A -609977 gene 55143 CDCA8 -609978 gene 93664 CADPS2 -609979 gene 245806 VGLL2 -609980 gene 389136 VGLL3 -609981 phenotype - - -609982 gene 27183 VPS4A -609983 gene 9525 VPS4B -609984 gene 55055 ZWILCH -609985 phenotype 677663 - -609986 gene 84674 CARD6 -609987 gene 346673 STRA8 -609988 gene 27068 PPA2 -609989 phenotype - - -609990 phenotype - - -609991 gene 84624 FNDC1 -609992 gene 51367 POP5 -609993 phenotype - - -609994 phenotype 594832 MYP11 -609995 phenotype 664780 MYP12 -609996 gene 340267 COL28A1 -609997 gene 84681 HINT2 -609998 gene 135114 HINT3 -609999 gene 646658 SYNDIG1L -610000 gene 55165 CEP55 -610001 predominantly phenotypes - - -610002 gene 81578 COL21A1 -610003 phenotype - - -610004 gene 84570 COL25A1 -610005 gene 23043 TNIK -610006 phenotype - - -610007 gene 55716 LMBR1L -610008 gene 22901 ARSG -610009 gene 340075 ARSI -610010 gene 79642 ARSJ -610011 gene 153642 ARSK -610012 gene 23213 SULF1 -610013 gene 55959 SULF2 -610014 gene 80213 TM2D3 -610015 phenotype - 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- -610879 gene 55291 PPP6R3 -610880 gene 53838 C11orf24 -610881 gene 51111 SUV420H1 -610882 gene 8636 SSNA1 -610883 phenotype - - -610884 gene 91442 C19orf40 -610885 gene 146956 EME1 -610886 gene 197342 EME2 -610887 gene 353497 POLN -610888 gene 360219 - -610889 gene 51194 IPO11 -610890 gene 401190 RGS7BP -610891 gene 399665 FAM102A -610892 gene 401135 SYT14L -610893 gene 27243 CHMP2A -610894 gene 145957 NRG4 -610895 gene 124857 WFIKKN2 -610896 phenotype - - -610897 gene 128866 CHMP4B -610898 phenotype 100038248 - -610899 gene 92421 CHMP4C -610900 gene 51510 CHMP5 -610901 gene 79643 CHMP6 -610902 gene 51534 VTA1 -610903 gene 51028 VPS36 -610904 gene 11267 SNF8 -610905 moved/removed - - -610906 phenotype 100188823 - -610907 gene 84313 VPS25 -610908 phenotype 100188317 - -610909 gene 79892 MCMBP -610910 phenotype - - -610911 gene 57514 ARHGAP31 -610912 gene 401138 AMTN -610913 phenotype - - -610914 gene 55068 ENOX1 -610915 phenotype - - -610916 gene 54888 NSUN2 -610917 gene 83871 RAB34 -610918 gene 140606 - -610919 gene 26164 MTG2 -610920 gene 85865 GTPBP10 -610921 phenotype - - -610922 gene 23742 NPAP1 -610923 gene 84912 SLC35B4 -610924 gene 10616 RBCK1 -610925 gene 84818 IL17RC -610926 phenotype 100188748 - -610927 phenotype - - -610928 gene 64321 SOX17 -610929 gene 80228 ORAI2 -610930 gene 93129 ORAI3 -610931 gene 57623 ZFAT -610932 gene 5756 TWF1 -610933 gene 90678 LRSAM1 -610934 gene 135935 NOBOX -610935 gene 353174 ZACN -610936 gene 29968 PSAT1 -610937 gene 23322 RPGRIP1L -610938 phenotype - - -610939 gene 406967 MIR192 -610940 gene 406969 MIR194-1 -610941 gene 406970 MIR194-2 -610942 gene 406987 MIR204 -610943 gene 406997 MIR215 -610944 gene 406998 MIR216A -610945 gene 407022 MIR296 -610946 gene 442890 MIR133B -610947 phenotype - - -610948 phenotype 100188825 - -610949 gene 255928 SYT14 -610950 gene 83851 SYT16 -610951 phenotype - - -610952 gene 51340 CRNKL1 -610953 gene 80119 PIF1 -610954 phenotype - - -610955 gene 27095 TRAPPC3 -610956 gene 55157 DARS2 -610957 gene 51067 YARS2 -610958 gene 84803 AGPAT9 -610959 gene 494325 MIR376A1 -610960 gene 664615 MIR376A2 -610961 gene 574435 MIR376B -610962 gene 23381 SMG5 -610963 gene 23293 SMG6 -610964 gene 9887 SMG7 -610965 phenotype - - -610966 gene 79068 FTO -610967 phenotype - - -610968 phenotype - - -610969 gene 58485 TRAPPC1 -610970 gene 51693 TRAPPC2L -610971 gene 51399 TRAPPC4 -610972 gene 55966 AJAP1 -610973 gene 143098 MPP7 -610974 gene 25925 ZNF521 -610975 gene 645832 SEBOX -610976 gene 164668 APOBEC3H -610977 gene 10227 MFSD10 -610978 phenotype - - -610979 gene 9677 PPIP5K1 -610980 gene 55539 KCNQ1DN -610981 gene 164684 WBP2NL -610982 gene 64423 INF2 -610983 gene 442913 MIR376C -610984 phenotype - - -610985 gene 55293 UEVLD -610986 gene 79705 LRRK1 -610987 gene 653308 ASAH2B -610988 phenotype - - -610989 gene 22853 LMTK2 -610990 gene 170954 PPP1R18 -610991 gene 23363 OBSL1 -610992 phenotype - - -610993 gene 84101 USP44 -610994 gene 387521 TMEM189 -610995 gene 51449 PCYOX1 -610996 gene 92675 DTD1 -610997 phenotype 100188826 - -610998 gene 79006 METRN -610999 gene 80314 EPC1 -611000 gene 26122 EPC2 -611001 gene 64769 MEAF6 -611002 gene 79652 TMEM204 -611003 phenotype 100188827 - -611004 phenotype 100188828 - -611005 gene 51320 MEX3C -611006 gene 81689 ISCA1 -611007 gene 92312 MEX3A -611008 gene 84206 MEX3B -611009 gene 399664 MEX3D -611010 phenotype 100124414 GINGF4 -611011 gene 91304 TMEM259 -611012 gene 353299 RGSL1 -611013 gene - - -611014 phenotype 100188321 - -611015 phenotype - - -611016 phenotype - - -611017 gene 219743 TYSND1 -611018 gene 400961 PAIP2B -611019 gene 155066 ATP6V0E2 -611020 gene 406991 MIR21 -611021 gene 51068 NMD3 -611022 phenotype - - -611023 gene 57570 TRMT5 -611024 gene 63934 ZNF667 -611025 gene 219670 ENKUR -611026 gene 79152 FA2H -611027 gene 79801 SHCBP1 -611028 gene 55754 TMEM30A -611029 gene 161291 TMEM30B -611030 gene 644444 TMEM30C -611031 phenotype 100124415 - -611032 gene 128153 SPATA17 -611033 gene 29125 C11orf21 -611034 gene 10786 SLC17A3 -611035 gene 200558 APLF -611036 gene 114134 SLC2A13 -611037 gene 115286 SLC25A26 -611038 phenotype - - -611039 gene 144195 SLC2A14 -611040 phenotype - - -611041 gene 91107 TRIM47 -611042 gene 149018 LELP1 -611043 gene 79727 LIN28A -611044 gene 389421 LIN28B -611045 gene 92579 G6PC3 -611046 phenotype 100188829 - -611047 gene 154064 RAET1L -611048 gene 23645 PPP1R15A -611049 gene 10246 SLC17A2 -611050 gene 767558 LUZP6 -611051 gene 152137 CCDC50 -611052 gene 9739 SETD1A -611053 gene 9853 RUSC2 -611054 gene 8500 PPFIA1 -611055 gene 23067 SETD1B -611056 gene 51540 SCLY -611057 moved/removed - - -611058 gene 51555 PEX5L -611059 gene 80335 WDR82 -611060 gene 26040 SETBP1 -611061 gene 56975 FAM20C -611062 gene 54757 FAM20A -611063 gene 9917 FAM20B -611064 phenotype - - -611065 gene 152926 PPM1K -611066 gene 23035 PHLPP2 -611067 phenotype - - -611068 gene 26807 SNORD43 -611069 gene 116936 - -611070 gene 116937 SNORD83A -611071 gene 116938 SNORD83B -611072 gene 120526 DNAJC24 -611073 phenotype 100188830 - -611074 gene 390259 BSX -611075 gene 51611 DPH5 -611076 gene 51559 NT5DC3 -611077 gene 131474 CHCHD4 -611078 gene 55871 CBWD1 -611079 gene 150472 CBWD2 -611080 gene 445571 CBWD3 -611081 phenotype - - -611082 gene 440823 MIAT -611083 gene 137872 ADHFE1 -611084 gene 200350 FOXD4L1 -611085 gene 100036519 FOXD4L2 -611086 gene 286380 FOXD4L3 -611087 phenotype - - -611088 gene 85478 CCDC65 -611089 gene 64419 MTMR14 -611090 phenotype - - -611091 phenotype - - -611092 phenotype - - -611093 phenotype - - -611094 phenotype 100101423 MRT8 -611095 phenotype 100101424 MRT9 -611096 phenotype 100101425 MRT10 -611097 phenotype 100101426 MRT11 -611098 gene 79689 STEAP4 -611099 gene 10130 PDIA6 -611100 phenotype 100188834 - -611101 gene 57449 PLEKHG5 -611102 phenotype - - -611103 gene 28976 ACAD9 -611104 gene 121512 FGD4 -611105 phenotype - - -611106 gene 340152 ZC3H12D -611107 phenotype 100009675 MRT4 -611108 gene 375567 VWC2 -611109 phenotype 100188835 - -611110 gene 56911 MAP3K7CL -611111 gene 340168 DPPA5 -611112 gene 147906 DACT3 -611113 gene 752014 CEMP1 -611114 gene 406942 MIR150 -611115 gene 220001 VWCE -611116 gene 406990 MIR208A -611117 gene 51400 PPME1 -611118 gene 64428 NARFL -611119 gene 55975 KLHL7 -611120 gene 55304 SPTLC3 -611121 gene 79789 CLMN -611122 gene 23243 ANKRD28 -611123 gene 284656 EPHA10 -611124 gene 256471 MFSD8 -611125 gene 92126 DSEL -611126 phenotype - - -611127 gene 164153 UBL4B -611128 gene 161357 MDGA2 -611129 gene 54838 WBP1L -611130 gene 91782 CHMP7 -611131 phenotype - - -611132 gene 64080 RBKS -611133 gene 25826 SNORD82 -611134 phenotype - - -611135 gene 152831 KLB -611136 phenotype - - -611137 gene 122706 PSMB11 -611138 gene 55342 STRBP -611139 phenotype 100188836 - -611140 gene 9894 TELO2 -611141 gene 142678 MIB2 -611142 gene 9793 CKAP5 -611143 gene 84142 FAM175A -611144 gene 23172 FAM175B -611145 gene 169026 SLC30A8 -611146 gene 55532 SLC30A10 -611147 phenotype 100188328 - -611148 gene 55676 SLC30A6 -611149 gene 148867 SLC30A7 -611150 gene 25814 ATXN10 -611151 gene 27037 TRMT2A -611152 phenotype 100188837 - -611153 gene 7507 XPA -611154 phenotype 100188754 - -611155 phenotype 100188838 - -611156 gene 79956 ERMP1 -611157 gene 55257 MRGBP -611158 gene 374454 KRT77 -611159 gene 196374 KRT78 -611160 gene 338785 KRT79 -611161 gene 144501 KRT80 -611162 phenotype - - -611163 gene 84969 TOX2 -611164 gene 503582 ARGFX -611165 gene 503834 DPRX -611166 gene 284355 TPRX1 -611167 gene 348825 TPRXL -611168 gene 503835 DUXA -611169 gene 79820 CATSPERB -611170 gene 219285 SAMD9L -611171 gene 57698 KIAA1598 -611172 gene 407040 MIR34A -611173 gene 494324 MIR375 -611174 phenotype - - -611175 gene 29789 OLA1 -611176 gene 51528 JKAMP -611177 gene 57560 IFT80 -611178 gene 85569 GALP -611179 gene 134549 SHROOM1 -611180 gene 25920 NELFB -611181 gene 80724 ACAD10 -611182 phenotype - - -611183 gene 55845 BRK1 -611184 gene 9780 PIEZO1 -611185 phenotype 100302512 - -611186 gene 407046 MIR9-1 -611187 gene 407047 MIR9-2 -611188 gene 407051 MIR9-3 -611189 gene 406974 MIR197 -611190 gene 442911 MIR346 -611191 gene 406910 MIR125A -611192 gene 29123 ANKRD11 -611193 gene 51018 RRP15 -611194 gene 22902 RUFY3 -611195 gene 152789 JAKMIP1 -611196 gene 83637 ZMIZ2 -611197 gene 9832 JAKMIP2 -611198 gene 282973 JAKMIP3 -611199 gene 30836 DNTTIP2 -611200 gene 221400 TDRD6 -611201 gene 55958 KLHL9 -611202 gene 56624 ASAH2 -611203 gene 80331 DNAJC5 -611204 gene 440193 CCDC88C -611205 gene 283234 CCDC88B -611206 gene 23234 DNAJC9 -611207 gene 64215 DNAJC1 -611208 gene 92906 HNRNPLL -611209 phenotype - - -611210 gene 55872 PBK -611211 gene 84957 RELT -611212 gene 768211 RELL1 -611213 gene 285613 RELL2 -611214 gene 55720 TSR1 -611215 gene 791114 PWRN1 -611216 gene 23190 UBXN4 -611217 gene 791115 PWRN2 -611218 gene 284110 GSDMA -611219 gene 55898 UNC45A -611220 gene 146862 UNC45B -611221 gene 55876 GSDMB -611222 phenotype - - -611223 gene 10000 AKT3 -611224 gene 8802 SUCLG1 -611225 phenotype - - -611226 gene 219681 ARMC3 -611227 gene 84329 HVCN1 -611228 phenotype - - -611229 gene 27248 ERLEC1 -611230 gene 29781 NCAPH2 -611231 gene 9073 CLDN8 -611232 gene 9069 CLDN12 -611233 gene 441549 CDNF -611234 gene 151354 FAM84A -611235 gene 79041 TMEM38A -611236 gene 55151 TMEM38B -611237 gene 114781 BTBD9 -611238 gene 79145 CHCHD7 -611239 gene 114787 GPRIN1 -611240 gene 9721 GPRIN2 -611241 gene 285513 GPRIN3 -611242 phenotype 100188839 - -611243 gene 55253 TYW1 -611244 gene 55039 TRMT12 -611245 gene 127253 TYW3 -611246 gene 9836 LCMT2 -611247 phenotype 100126593 - -611248 gene 116138 KLHDC3 -611249 gene 406884 MIRLET7B -611250 gene 406887 MIRLET7E -611251 gene 57540 PTCHD2 -611252 phenotype 724107 SPG32 -611253 gene 55582 KIF27 -611254 gene 374654 KIF7 -611255 gene 10811 NOXA1 -611256 gene 124056 NOXO1 -611257 gene 121256 TMEM132D -611258 gene 23424 TDRD7 -611259 gene 54901 CDKAL1 -611260 gene 79896 THNSL1 -611261 gene 55258 THNSL2 -611262 gene 83475 DOHH -611263 phenotype - - -611264 gene 387103 CENPW -611265 gene 85441 HELZ2 -611266 gene 440915 POTEKP -611267 gene 143503 OR51E1 -611268 gene 81285 OR51E2 -611269 gene 64434 NOM1 -611270 gene 63908 NAPB -611271 gene 81930 KIF18A -611272 gene 23660 ZKSCAN5 -611273 gene 390598 SKOR1 -611274 phenotype 777645 GLC1N -611275 gene 149428 BNIPL -611276 phenotype 399564 GLC1H -611277 phenotype - - -611278 gene 113220 KIF12 -611279 gene 9928 KIF14 -611280 gene 23588 KLHDC2 -611281 gene 122773 KLHDC1 -611282 gene 23268 DNMBP -611283 phenotype - - -611284 phenotype - - -611285 gene 54442 KCTD5 -611286 gene 8634 RTCA -611287 gene 10175 CNIH1 -611288 gene 254263 CNIH2 -611289 gene 116844 LRG1 -611290 gene 79840 NHEJ1 -611291 phenotype - - -611292 gene 157807 CLVS1 -611293 gene 79080 CCDC86 -611294 gene 390874 ONECUT3 -611295 gene 54800 KLHL24 -611296 gene 389289 ANXA2R -611297 gene 116039 OSR2 -611298 gene 57535 KIAA1324 -611299 gene 55632 G2E3 -611300 gene 55323 LARP6 -611301 gene 80233 C17orf70 -611302 phenotype - - -611303 gene 23274 CLEC16A -611304 gene 57146 TMEM159 -611305 gene 22885 ABLIM3 -611306 gene 286133 SCARA5 -611307 phenotype - - -611308 phenotype - - -611309 gene 11067 C10orf10 -611310 gene 118672 PSTK -611311 phenotype - - -611312 gene 49860 CRNN -611313 gene 387715 ARMS2 -611314 gene 283651 HMGN2P46 -611315 gene 7579 ZSCAN20 -611316 gene 84561 SLC12A8 -611317 gene 23533 PIK3R5 -611318 gene 116931 MED12L -611319 gene 83982 IFI27L2 -611320 gene 122509 IFI27L1 -611321 gene 22883 CLSTN1 -611322 gene 10294 DNAJA2 -611323 gene 64084 CLSTN2 -611324 gene 9746 CLSTN3 -611325 gene 9238 TBRG4 -611326 gene 9236 CCPG1 -611327 gene 11080 DNAJB4 -611328 gene 25822 DNAJB5 -611329 gene 677765 SCARNA18 -611330 gene 677800 SNORA12 -611331 gene 677841 SNORA74B -611332 gene 10049 DNAJB6 -611333 gene 677826 SNORA45 -611334 gene 677847 SNORA81 -611335 gene 677796 SNORA5C -611336 gene 150353 DNAJB7 -611337 gene 165721 DNAJB8 -611338 gene 23192 ATG4B -611339 gene 84938 ATG4C -611340 gene 84971 ATG4D -611341 gene 51726 DNAJB11 -611342 gene 84267 C9orf64 -611343 gene 414328 IDNK -611344 gene 158158 RASEF -611345 gene 26173 INTS1 -611346 gene 57508 INTS2 -611347 gene 65123 INTS3 -611348 gene 92105 INTS4 -611349 gene 80789 INTS5 -611350 gene 25896 INTS7 -611351 gene 55656 INTS8 -611352 gene 55756 INTS9 -611353 gene 55174 INTS10 -611354 gene 54973 CPSF3L -611355 gene 57117 INTS12 -611356 gene 80318 GKAP1 -611357 gene 55603 FAM46A -611358 gene 84282 RNF135 -611359 gene 55626 AMBRA1 -611360 gene 55215 FANCI -611361 gene 55236 UBA6 -611362 gene 65264 UBE2Z -611363 phenotype - - -611364 phenotype 100126594 - -611365 gene 653659 TMEM183B -611366 gene 60314 C12orf10 -611367 gene 23549 DNPEP -611368 gene 84944 MAEL -611369 phenotype - - -611370 gene 55277 FGGY -611371 gene 115950 ZNF653 -611372 gene 60682 SMAP1 -611373 gene 116842 LEAP2 -611374 gene 407041 MIR34B -611375 gene 407042 MIR34C -611376 phenotype 100126595 - -611377 phenotype - - -611378 phenotype - - -611379 gene 57609 DIP2B -611380 gene 22982 DIP2C -611381 phenotype 101241898 - -611382 phenotype 101241899 - -611383 phenotype - - -611384 phenotype 101910199 - -611385 moved/removed - - -611386 gene 23394 ADNP -611387 gene 284340 CXCL17 -611388 gene 116092 DNTTIP1 -611389 gene 29964 PRICKLE4 -611390 phenotype - - -611391 phenotype - - -611392 gene 84890 ADO -611393 gene 83541 FAM110A -611394 gene 90362 FAM110B -611395 gene 642273 FAM110C -611396 gene 149685 ADIG -611397 gene 85461 TANC1 -611398 gene 246176 GAS2L2 -611399 gene 132320 SCLT1 -611400 gene 100124700 HOTAIR -611401 gene 29113 C6orf15 -611402 gene 220164 DOK6 -611403 phenotype 100188840 - -611404 gene 259215 LY6G6F -611405 gene 10171 RCL1 -611406 gene 1783 DYNC1LI2 -611407 phenotype - - -611408 gene 167691 LCA5 -611409 gene 4948 OCA2 -611410 gene 9750 FAM65B -611411 gene 84254 CAMKK1 -611412 gene 80896 NPL -611413 gene 58512 DLGAP3 -611414 gene 125972 CALR3 -611415 gene 10714 POLD3 -611416 gene 27324 TOX3 -611417 gene 129049 SGSM1 -611418 gene 9905 SGSM2 -611419 gene 221491 C6orf1 -611420 gene 25792 CIZ1 -611421 gene 10847 SRCAP -611422 gene 84057 MND1 -611423 gene 9662 CEP135 -611424 gene 116225 ZMYND19 -611425 gene 116840 CNTROB -611426 predominantly phenotypes - - -611427 gene 25902 MTHFD1L -611428 gene 29980 DONSON -611429 gene 339883 C3orf35 -611430 gene 199223 TTC21A -611431 phenotype - - -611432 gene 81704 DOCK8 -611433 gene 55359 STYK1 -611434 gene 116449 CLNK -611435 gene 79930 DOK3 -611436 gene 377677 CA13 -611437 gene 142679 DUSP19 -611438 gene 167838 TXLNB -611439 gene 9278 ZBTB22 -611440 gene 9277 WDR46 -611441 gene 26584 DUX1 -611442 gene 26583 DUX2 -611443 gene 26582 DUX3 -611444 gene 26581 DUX5 -611445 gene 26052 DNM3 -611446 gene 150290 DUSP18 -611447 gene 51087 YBX2 -611448 gene 9790 BMS1 -611449 gene 64328 XPO4 -611450 gene 54899 PXK -611451 phenotype - 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- -611494 phenotype 100188842 - -611495 gene 126410 CYP4F22 -611496 gene 140628 GATA5 -611497 phenotype - - -611498 phenotype - - -611499 gene 2990 GUSB -611500 gene 407002 MIR219-1 -611501 gene 23261 CAMTA1 -611502 gene 64105 CENPK -611503 gene 91687 CENPL -611504 gene 79172 CENPO -611505 gene 401541 CENPP -611506 gene 55166 CENPQ -611507 gene 493856 CISD2 -611508 gene 23125 CAMTA2 -611509 gene 55839 CENPN -611510 gene 80152 CENPT -611511 gene 79682 CENPU -611512 gene 55818 KDM3A -611513 gene 63974 NEUROD6 -611514 gene 79971 WLS -611515 phenotype 100049160 FEB7 -611516 gene 84276 NICN1 -611517 gene 57834 CYP4F11 -611518 gene 55619 DOCK10 -611519 gene 26073 POLDIP2 -611520 gene 84271 POLDIP3 -611521 phenotype - - -611522 phenotype - - -611523 phenotype - - -611524 gene 57038 RARS2 -611525 gene 57804 POLD4 -611526 gene 8602 NOP14 -611527 gene 150159 SLC9B1 -611528 phenotype - - -611529 gene 29785 CYP2S1 -611530 gene 57486 NLN -611531 gene 10436 EMG1 -611532 gene 65083 NOL6 -611533 gene 51406 NOL7 -611534 gene 55035 NOL8 -611535 phenotype 100188843 - -611536 phenotype 100188844 - -611537 gene 56259 CTNNBL1 -611538 gene 125958 OR7D4 -611539 gene 27022 FOXD3 -611540 gene 84251 SGIP1 -611541 gene 81609 SNX27 -611542 gene 411 ARSB -611543 phenotype 100188845 - -611544 phenotype - - -611545 gene 11283 CYP4F8 -611546 gene 79071 ELOVL6 -611547 phenotype - - -611548 phenotype - - -611549 gene 259232 NALCN -611550 gene 259197 NCR3 -611551 gene 129804 FBLN7 -611552 gene 93100 NAPRT1 -611553 phenotype - - -611554 phenotype - - -611555 predominantly phenotypes - - -611556 phenotype - - -611557 gene 11045 UPK1A -611558 gene 7379 UPK2 -611559 gene 7380 UPK3A -611560 phenotype - - -611561 phenotype - - -611562 gene 124404 SEPT12 -611563 gene 641977 SEPT7P2 -611564 gene 54971 BANP -611565 gene 84162 KIAA1109 -611566 gene 221823 PRPS1L1 -611567 gene 140733 MACROD2 -611568 gene 55638 SYBU -611569 gene 26586 CKAP2 -611570 gene 2203 FBP1 -611571 phenotype 286751 OTSC4 -611572 phenotype 399516 OTSC7 -611573 gene 259230 SGMS1 -611574 gene 166929 SGMS2 -611575 gene 142891 SAMD8 -611576 gene 406903 MIR10B -611577 gene 23135 KDM6B -611578 gene 391059 FRRS1 -611579 gene 283953 TMEM114 -611580 gene 10876 EDDM3A -611581 moved/removed - 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-611631 phenotype 100144434 - -611632 gene 29914 UBIAD1 -611633 gene 23168 RTF1 -611634 phenotype 100188849 - -611635 gene 58158 NEUROD4 -611636 gene 10003 NAALAD2 -611637 phenotype 100240702 - -611638 phenotype - - -611639 gene 100125288 ZGLP1 -611640 gene 92565 FANK1 -611641 gene 641654 HEPN1 -611642 gene 220296 HEPACAM -611643 gene 387032 ZKSCAN4 -611644 phenotype 100188850 - -611645 gene 80319 CXXC4 -611646 gene 80309 SPHKAP -611647 gene 64801 ARV1 -611648 gene 23262 PPIP5K2 -611649 gene 80013 FAM188A -611650 predominantly phenotypes - - -611651 gene 50487 PLA2G3 -611652 gene 81579 PLA2G12A -611653 gene 84647 PLA2G12B -611654 gene 79848 CSPP1 -611655 gene 80055 PGAP1 -611656 gene 80143 SIKE1 -611657 gene 80176 SPSB1 -611658 gene 84727 SPSB2 -611659 gene 90864 SPSB3 -611660 gene 92369 SPSB4 -611661 gene 80174 DBF4B -611662 gene 100126791 EGOT -611663 gene 128637 TBC1D20 -611664 phenotype - - -611665 gene 79039 DDX54 -611666 gene 403313 PPAPDC2 -611667 gene 65244 SPATS2 -611668 gene 79585 CORO7 -611669 gene 55621 TRMT1 -611670 gene 51477 ISYNA1 -611671 gene 80235 PIGZ -611672 gene 113235 SLC46A1 -611673 gene 81627 TRMT1L -611674 gene 150165 XKR3 -611675 gene 9764 KIAA0513 -611676 gene 132954 PDCL2 -611677 gene 441933 OR13G1 -611678 gene 79031 PDCL3 -611679 gene 10517 FBXW10 -611680 gene 79098 C1orf116 -611681 gene 80070 ADAMTS20 -611682 gene 80350 LPAL2 -611683 gene 79672 FN3KRP -611684 gene 9733 SART3 -611685 gene 9025 RNF8 -611686 gene 64921 CASD1 -611687 gene 154288 KHDC3L -611688 gene 80759 KHDC1 -611689 gene 441161 OOEP -611690 gene 79056 PRRG4 -611691 gene 79987 SVEP1 -611692 gene 403341 ZBTB34 -611693 gene 79827 CLMP -611694 phenotype - 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- -611734 gene 79084 WDR77 -611735 gene 64866 CDCP1 -611736 gene 9687 GREB1 -611737 gene 151011 SEPT10 -611738 phenotype 100188853 - -611739 phenotype 100188854 - -611740 gene 83875 BCO2 -611741 gene 9311 ASIC3 -611742 phenotype - - -611743 gene 55200 PLEKHG6 -611744 gene 54726 OTUD4 -611745 gene 80124 VCPIP1 -611746 gene 80274 SCUBE1 -611747 gene 57758 SCUBE2 -611748 gene 56957 OTUD7B -611749 gene 54764 ZRANB1 -611750 gene 81493 SYNC -611751 gene 80745 THUMPD2 -611752 gene 84417 C2orf40 -611753 gene 81671 VMP1 -611754 gene 51166 AADAT -611755 phenotype - - -611756 gene 83853 ROPN1L -611757 gene 54763 ROPN1 -611758 gene 23252 OTUD3 -611759 gene 83930 STARD3NL -611760 gene 27253 PCDH17 -611761 gene 64788 LMF1 -611762 phenotype - - -611763 gene 81606 LBH -611764 gene 84518 CNFN -611765 gene 151516 ASPRV1 -611766 gene 123263 MTFMT -611767 gene 406913 MIR126 -611768 gene 442904 MIR335 -611769 gene 406916 MIR128-2 -611770 gene 137814 NKX2-6 -611771 phenotype - - -611772 gene 83540 NUF2 -611773 phenotype - - -611774 gene 406915 MIR128-1 -611775 phenotype - - -611776 gene 29078 NDUFAF4 -611777 phenotype - - -611778 gene 23171 GPD1L -611779 gene 84075 FSCB -611780 gene 57661 PHRF1 -611781 gene 63978 PRDM14 -611782 gene 57453 DSCAML1 -611783 phenotype - - -611784 gene 112495 GTF3C6 -611785 gene 340273 ABCB5 -611786 gene 51072 MEMO1 -611787 gene 129607 CMPK2 -611788 phenotype - - -611789 gene 133308 SLC9B2 -611790 gene 25924 MYRIP -611791 gene 374308 PTCHD3 -611792 gene 29063 ZCCHC4 -611793 gene 124801 LSM12 -611794 gene 442914 MIR369 -611795 gene 406937 MIR145 -611796 gene 29106 SCG3 -611797 gene 55245 UQCC1 -611798 gene 23167 EFR3A -611799 gene 254251 LCORL -611800 gene 63892 THADA -611801 gene 93210 PGAP3 -611802 gene 84299 MIEN1 -611803 gene 81533 ITFG1 -611804 phenotype - - -611805 gene 60481 ELOVL5 -611806 gene 57412 AS3MT -611807 gene 261726 TIPRL -611808 predominantly phenotypes - - -611809 phenotype - - -611810 gene 83878 USHBP1 -611811 gene 84449 ZNF333 -611812 phenotype - - -611813 gene 64834 ELOVL1 -611814 gene 54898 ELOVL2 -611815 gene 83401 ELOVL3 -611816 phenotype - - -611817 gene 22914 KLRK1 -611818 phenotype - - -611819 phenotype - - -611820 phenotype - - -611821 gene 65008 MRPL1 -611822 gene 51069 MRPL2 -611823 gene 51073 MRPL4 -611824 gene 65005 MRPL9 -611825 gene 124995 MRPL10 -611826 gene 65003 MRPL11 -611827 gene 64928 MRPL14 -611828 gene 29088 MRPL15 -611829 gene 54948 MRPL16 -611830 gene 63875 MRPL17 -611831 gene 29074 MRPL18 -611832 gene 9801 MRPL19 -611833 gene 55052 MRPL20 -611834 gene 219927 MRPL21 -611835 gene 29093 MRPL22 -611836 gene 79590 MRPL24 -611837 gene 51264 MRPL27 -611838 gene 51263 MRPL30 -611839 gene 64983 MRPL32 -611840 gene 64981 MRPL34 -611841 gene 51318 MRPL35 -611842 gene 64979 MRPL36 -611843 gene 51253 MRPL37 -611844 gene 64978 MRPL38 -611845 gene 54148 MRPL39 -611846 gene 64975 MRPL41 -611847 gene 28977 MRPL42 -611848 gene 84545 MRPL43 -611849 gene 65080 MRPL44 -611850 gene 84311 MRPL45 -611851 gene 26589 MRPL46 -611852 gene 57129 MRPL47 -611853 gene 51642 MRPL48 -611854 gene 54534 MRPL50 -611855 gene 51258 MRPL51 -611856 gene 122704 MRPL52 -611857 gene 116540 MRPL53 -611858 gene 116541 MRPL54 -611859 gene 128308 MRPL55 -611860 moved/removed - 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-611908 gene 91869 RFT1 -611909 gene 64778 FNDC3B -611910 gene 387700 SLC16A12 -611911 gene 23479 ISCU -611912 gene 64710 NUCKS1 -611913 phenotype - - -611914 gene 81628 TSC22D4 -611915 gene 81552 VOPP1 -611916 gene 256076 COL6A5 -611917 gene 79831 KDM8 -611918 moved/removed - - -611919 gene 79697 C14orf169 -611920 phenotype 100188860 - -611921 gene 375519 GJB7 -611922 gene 219770 GJD4 -611923 gene 81025 GJA9 -611924 gene 84694 GJA10 -611925 gene 349149 GJC3 -611926 phenotype - - -611927 gene 286077 FAM83H -611928 phenotype - - -611929 phenotype - - -611930 gene 81875 ISG20L2 -611931 gene 151742 PPM1L -611932 gene 55847 CISD1 -611933 gene 284106 CISD3 -611934 phenotype 100188861 - -611935 gene 27249 MMADHC -611936 phenotype - - -611937 gene 28501 IGHD3-3 -611938 phenotype - - -611939 gene 28442 IGHV3-23 -611940 gene 619373 MBOAT4 -611941 gene 29028 ATAD2 -611942 phenotype - - -611943 phenotype - - -611944 phenotype 100188865 - -611945 phenotype 100049159 SPG37 -611946 gene 80700 UBXN6 -611947 gene 79671 NLRX1 -611948 moved/removed - - -611949 gene 129642 MBOAT2 -611950 gene 10162 LPCAT3 -611951 gene 80776 B9D2 -611952 gene 51160 VPS28 -611953 phenotype - - -611954 gene 442918 MIR373 -611955 phenotype - - -611956 gene 79669 C3orf52 -611957 gene 494327 MIR378A -611958 phenotype 100188867 - -611959 phenotype 100188868 - -611960 phenotype - - -611961 predominantly phenotypes - - -611962 phenotype - - -611963 gene 344967 - -611964 gene 80777 CYB5B -611965 gene 80145 THOC7 -611966 gene 83696 TRAPPC9 -611967 gene 57563 KLHL8 -611968 gene 23283 CSTF2T -611969 gene 81532 MOB2 -611970 gene 84365 NIFK -611971 gene 51116 MRPS2 -611972 gene 64969 MRPS5 -611973 gene 64968 MRPS6 -611974 gene 51081 MRPS7 -611975 gene 64965 MRPS9 -611976 gene 55173 MRPS10 -611977 gene 64963 MRPS11 -611978 gene 63931 MRPS14 -611979 gene 64960 MRPS15 -611980 gene 51373 MRPS17 -611981 gene 55168 MRPS18A -611982 gene 28973 MRPS18B -611983 gene 51023 MRPS18C -611984 gene 54460 MRPS21 -611985 gene 51649 MRPS23 -611986 gene 64951 MRPS24 -611987 gene 64432 MRPS25 -611988 gene 64949 MRPS26 -611989 gene 23107 MRPS27 -611990 gene 28957 MRPS28 -611991 gene 10884 MRPS30 -611992 gene 10240 MRPS31 -611993 gene 51650 MRPS33 -611994 gene 65993 MRPS34 -611995 gene 60488 MRPS35 -611996 gene 92259 MRPS36 -611997 gene 78988 MRPL57 -611998 gene 84699 CREB3L3 -611999 gene 84440 RAB11FIP4 -612000 gene 9866 TRIM66 -612001 phenotype - 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-612084 gene 200931 SLC51A -612085 gene 123264 SLC51B -612086 gene 284293 HMSD -612087 gene 387836 CLEC2A -612088 gene 160364 CLEC12A -612089 phenotype 100188880 - -612090 gene 406983 MIR200A -612091 gene 406984 MIR200B -612092 gene 406985 MIR200C -612093 gene 406933 MIR141 -612094 gene 554210 MIR429 -612095 phenotype - - -612096 phenotype 100151644 OTSC8 -612097 phenotype - - -612098 phenotype - - -612099 phenotype 100188881 - -612100 phenotype - - -612101 gene 55300 PI4K2B -612102 gene 406890 MIRLET7G -612103 gene 64859 NABP1 -612104 gene 79035 NABP2 -612105 gene 100144748 KLLN -612106 gene 9923 ZBTB40 -612107 gene 63910 SLC17A9 -612108 phenotype 100499165 - -612109 phenotype - - -612110 phenotype 100188882 - -612111 gene 25816 TNFAIP8 -612112 gene 79626 TNFAIP8L2 -612113 phenotype 100188883 - -612114 phenotype 100188884 - -612115 gene 50650 ARHGEF3 -612116 gene 23326 USP22 -612117 gene 406935 MIR143 -612118 gene 440073 IQSEC3 -612119 phenotype - - -612120 gene 63924 CIDEC -612121 gene 285848 PNPLA1 -612122 gene 375775 PNPLA7 -612123 gene 50640 PNPLA8 -612124 phenotype - 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- -615528 phenotype - - -615529 phenotype - - -615530 phenotype - - -615531 gene 84283 TMEM79 -615532 gene 55780 ERMARD -615533 gene 55863 TMEM126B -615534 gene 51300 TIMMDC1 -615535 gene 163183 SYNE4 -615536 gene 389073 C2orf80 -615537 phenotype - - -615538 phenotype - - -615539 phenotype - - -615540 phenotype - - -615541 phenotype - - -615542 phenotype - - -615543 gene 348110 C15orf38 -615544 phenotype - - -615545 phenotype - - -615546 phenotype - - -615547 phenotype - - -615548 phenotype - - -615549 gene 79798 ARMC5 -615550 phenotype - - -615551 phenotype - - -615552 phenotype - - -615553 phenotype - - -615554 phenotype - - -615555 phenotype - - -615556 gene 79969 ATAT1 -615557 phenotype - - -615558 phenotype - - -615559 phenotype - - -615560 phenotype - - -615561 phenotype - - -615562 gene 10615 SPAG5 -615563 gene 340371 NRBP2 -615564 gene 119559 SFXN4 -615565 phenotype - - -615566 gene 22903 BTBD3 -615567 gene 79934 ADCK4 -615568 gene 101669767 SCHLAP1 -615569 gene 94081 SFXN1 -615570 gene 118980 SFXN2 -615571 gene 81855 SFXN3 -615572 gene 94097 SFXN5 -615573 phenotype - - -615574 phenotype - - -615575 phenotype - - -615576 gene 406961 MIR185 -615577 phenotype - - -615578 phenotype - - -615579 gene 552889 ATXN7L3B -615580 gene 84436 ZNF528 -615581 gene 554045 DUX4L9 -615582 phenotype - - -615583 phenotype - - -615584 gene 374393 FAM111B -615585 gene 146167 SLC38A8 -615586 gene 84984 CEP19 -615587 gene 23511 NUP188 -615588 gene 91689 SMDT1 -615589 phenotype 102723100 OTSC10 -615590 phenotype - - -615591 phenotype - - -615592 phenotype - - -615593 phenotype - - -615594 gene 100506013 APELA -615595 phenotype - - -615596 phenotype - - -615597 phenotype - - -615598 phenotype - - -615599 phenotype - - -615600 gene 147948 ZNF582 -615601 gene 339896 GADL1 -615602 phenotype - - -615603 gene 55313 CPPED1 -615604 phenotype - - -615605 phenotype - - -615606 gene 79908 BTNL8 -615607 phenotype - - -615608 gene 64115 C10orf54 -615609 gene 283514 SIAH3 -615610 gene 222256 CDHR3 -615611 gene 10845 CLPX -615612 phenotype 102775567 - -615613 gene 283902 HCCAT5 -615614 gene 253714 MMS22L -615615 phenotype - - -615616 phenotype - - -615617 phenotype - - -615618 gene 56983 POGLUT1 -615619 predominantly phenotypes - - -615620 gene 11133 KPTN -615622 gene 102659353 THRIL -615623 gene 65260 COA7 -615624 gene 643911 CRNDE -615625 phenotype - - -615626 gene 84529 C15orf41 -615627 gene 140707 BRI3BP -615628 gene 25798 BRI3 -615629 phenotype - - -615630 phenotype - - -615631 phenotype - - -615632 phenotype - - -615633 phenotype - - -615634 gene 84303 CHCHD6 -615635 gene 51663 ZFR -615636 phenotype - - -615637 phenotype - - -615638 gene 9918 NCAPD2 -615639 gene 692148 SCARNA10 -615640 gene 677775 SCARNA5 -615641 gene 677772 SCARNA6 -615642 gene 677777 SCARNA12 -615643 phenotype - - -615644 gene 677767 SCARNA7 -615645 gene 677769 SCARNA17 -615646 gene 677776 SCARNA8 -615647 gene 400629 TEX19 -615648 gene 197358 NLRC3 -615649 phenotype 448962 DFNA54 -615650 gene 26166 RGS22 -615651 phenotype - - -615652 gene 55856 ACOT13 -615653 gene 284486 THEM5 -615654 phenotype 100359395 DFNA58 -615656 phenotype - - -615657 gene 406934 MIR142 -615658 phenotype - - -615659 gene 23505 TMEM131 -615660 gene 4736 RPL10A -615661 gene 84306 PDCD2L -615662 gene 89777 SERPINB12 -615663 phenotype - - -615664 gene 9840 TESPA1 -615665 phenotype - - -615666 gene 57604 KIAA1456 -615667 gene 375748 ERCC6L2 -615668 phenotype - - -615669 gene 133418 EMB -615670 phenotype - - -615671 gene 84193 SETD3 -615672 gene 574456 MIR497 -615673 phenotype - - -615674 phenotype 102997065 - -615676 gene 732253 TDRG1 -615677 gene 327657 SERPINA9 -615678 gene - - -615679 gene 83442 SH3BGRL3 -615683 phenotype - - -615684 gene 164045 HFM1 -615685 phenotype - - -615686 phenotype - - -615689 gene 57463 AMIGO1 -615690 gene 347902 AMIGO2 -615691 gene - - -615692 gene 66005 CHID1 +# TEST file for OMIM MIM2GENE file. These numbers are completely fictitious. +# MIM Number MIM Entry Type (see FAQ 1.3 at https://omim.org/help/faq) Entrez Gene ID (NCBI) Approved Gene Symbol (HGNC) Ensembl Gene ID (Ensembl) +123456 predominantly phenotypes +123457 phenotype 123456789 +123458 phenotype +123459 predominantly phenotypes +123460 phenotype +123461 phenotype +123462 moved/removed +123463 gene/phenotype 124 GENE3A4 ENSG00000123456 +123464 gene 123 GENE2 ENSG00000654321 +123465 phenotype +123466 gene 216 GENE23 ENSG12345678901 +123467 moved/removed +123468 gene 87 GENE1 ENSG12345678902 +123469 predominantly phenotypes \ No newline at end of file diff --git a/exomiser-db/src/test/resources/jdbc.properties b/exomiser-db/src/test/resources/jdbc.properties index 21dc99a12..73978da96 100644 --- a/exomiser-db/src/test/resources/jdbc.properties +++ b/exomiser-db/src/test/resources/jdbc.properties @@ -1,3 +1,22 @@ +# +# The Exomiser - A tool to annotate and prioritize variants +# +# Copyright (C) 2012 - 2016 Charite Universittsmedizin Berlin and Genome Research Ltd. +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see . +# + #Exomiser connection properties exomiser.h2.driverClassName=org.h2.Driver exomiser.h2.url=jdbc:h2:file:target/exomiser;MODE=PostgreSQL; @@ -12,6 +31,6 @@ exomiser.postgres.password=vcfanalysis #Phenodigm connection properties phenodigm.driverClassName=com.mysql.jdbc.Driver -phenodigm.url=jdbc:mysql://web-mei-phct:3368/phenodigm_mar2014?autoReconnect=true -phenodigm.username=ds5 -phenodigm.password=fuzzybump234 \ No newline at end of file +phenodigm.url=jdbc:mysql://phct-dev:3368/phenodigm_mar2014?autoReconnect=true +phenodigm.username=pheno_ro +phenodigm.password= \ No newline at end of file diff --git a/exomiser-rest-analysis/.mvn/wrapper/maven-wrapper.jar b/exomiser-rest-analysis/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-rest-analysis/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-rest-analysis/pom.xml b/exomiser-rest-analysis/pom.xml index 1dc6b5047..fd8d50d11 100644 --- a/exomiser-rest-analysis/pom.xml +++ b/exomiser-rest-analysis/pom.xml @@ -19,70 +19,63 @@ --> - 4.0.0 + xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"> + 4.0.0 - de.charite.compbio.exomiser - exomiser-rest-analysis - jar + exomiser-rest-analysis + jar - exomiser-rest-analysis - Exomiser Analysis REST API + exomiser-rest-analysis + Exomiser Analysis REST API - - de.charite.compbio - Exomiser - 7.2.3 - + + org.monarchinitiative + exomiser + 8.0.0 + - - UTF-8 - 1.8 - + + UTF-8 + 1.8 + - + - de.charite.compbio - exomiser-core - ${project.version} + org.monarchinitiative + exomiser-spring-boot-starter + ${project.parent.version} - - org.springframework.boot - spring-boot-starter-artemis - - - org.springframework.boot - spring-boot-starter-jersey - - - org.springframework.boot - spring-boot-starter-web - - - - com.h2database - h2 - runtime - - - org.postgresql - postgresql - runtime - - - org.springframework.boot - spring-boot-starter-test - test - - - org.springframework.restdocs - spring-restdocs-mockmvc - test - - - + + org.monarchinitiative + exomiser-spring-boot-test + ${project.parent.version} + test + + + org.springframework.boot + spring-boot-starter-artemis + + + org.springframework.boot + spring-boot-starter-jersey + + + org.springframework.boot + spring-boot-starter-web + + + org.springframework.boot + spring-boot-starter-test + test + + + org.springframework.restdocs + spring-restdocs-mockmvc + test + + - + src/test/resources @@ -96,13 +89,23 @@ true - - - org.springframework.boot - spring-boot-maven-plugin - 1.2.7.RELEASE - - - - + + + org.springframework.boot + spring-boot-maven-plugin + ${spring-boot.version} + + true + + + + + repackage + build-info + + + + + + diff --git a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/ExomiserConfig.java b/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/ExomiserConfig.java deleted file mode 100644 index 86e1b1db9..000000000 --- a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/ExomiserConfig.java +++ /dev/null @@ -1,62 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.rest.analysis; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.ComponentScan; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.PropertySource; -import org.springframework.core.env.Environment; - -import java.io.IOException; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; - -/** - * @author Jules Jacobsen - */ -@Configuration -@ComponentScan("de.charite.compbio.exomiser.rest.analysis") -@PropertySource("classpath:application.properties") -public class ExomiserConfig { - - private static Logger logger = LoggerFactory.getLogger(ExomiserConfig.class); - - @Autowired - Environment environment; - - @Bean - Path analysisPath() { - Path analysisPath = Paths.get(environment.getProperty("exomiser.analysisPath")); - try { - if (!Files.exists(analysisPath)) { - logger.info("Setting up analysis path at {}", analysisPath); - Files.createDirectory(analysisPath); - } - } catch (IOException ex) { - logger.error("Unable to create directory for analyses {}", analysisPath, ex); - } - return analysisPath; - } -} diff --git a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/ExomiserRestAnalysisApplication.java b/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/ExomiserRestAnalysisApplication.java deleted file mode 100644 index 08d70e7b8..000000000 --- a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/ExomiserRestAnalysisApplication.java +++ /dev/null @@ -1,32 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.rest.analysis; - -import org.springframework.boot.SpringApplication; -import org.springframework.boot.autoconfigure.SpringBootApplication; -import org.springframework.context.annotation.Import; - -@SpringBootApplication -public class ExomiserRestAnalysisApplication { - - public static void main(String[] args) { - SpringApplication.run(ExomiserRestAnalysisApplication.class, args); - } -} diff --git a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/model/AnalysisResponse.java b/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/model/AnalysisResponse.java deleted file mode 100644 index c17680736..000000000 --- a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/model/AnalysisResponse.java +++ /dev/null @@ -1,87 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.rest.analysis.model; - -import com.fasterxml.jackson.annotation.JsonCreator; -import com.fasterxml.jackson.annotation.JsonGetter; -import com.fasterxml.jackson.annotation.JsonIgnoreProperties; -import com.fasterxml.jackson.annotation.JsonProperty; - -import java.util.Objects; - -/** - * @author Jules Jacobsen - */ -@JsonIgnoreProperties(ignoreUnknown=true) -public class AnalysisResponse { - - private final long id; - private final AnalysisStatus analysisStatus; - private final String message; - - @JsonCreator - public AnalysisResponse(@JsonProperty("id") long id, @JsonProperty("status") AnalysisStatus analysisStatus, @JsonProperty("message") String message) { - this.id = id; - this.analysisStatus = analysisStatus; - this.message = message; - } - - public long getId() { - return id; - } - -// @JsonGetter(value = "id_string") - public String getIdString() { - return Long.toString(id); - } - - @JsonGetter(value = "status") - public AnalysisStatus getAnalysisStatus() { - return analysisStatus; - } - - public String getMessage() { - return message; - } - - @Override - public boolean equals(Object o) { - if (this == o) return true; - if (o == null || getClass() != o.getClass()) return false; - AnalysisResponse that = (AnalysisResponse) o; - return id == that.id && - analysisStatus == that.analysisStatus && - Objects.equals(message, that.message); - } - - @Override - public int hashCode() { - return Objects.hash(id, analysisStatus, message); - } - - @Override - public String toString() { - return "AnalysisResponse{" + - "id=" + id + - ", analysisStatus=" + analysisStatus + - ", message='" + message + '\'' + - '}'; - } -} diff --git a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/model/AnalysisStatus.java b/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/model/AnalysisStatus.java deleted file mode 100644 index b1292aa90..000000000 --- a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/model/AnalysisStatus.java +++ /dev/null @@ -1,28 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.rest.analysis.model; - -/** - * @author Jules Jacobsen - */ -public enum AnalysisStatus { - AWAITING_VCF, AWAITING_PED, READY, QUEUED, PROCESSING, COMPLETED, INFO, ERROR; -} - diff --git a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/service/AnalysisService.java b/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/service/AnalysisService.java deleted file mode 100644 index 52a7af714..000000000 --- a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/service/AnalysisService.java +++ /dev/null @@ -1,59 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.rest.analysis.service; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import de.charite.compbio.exomiser.rest.analysis.model.AnalysisResponse; -import org.springframework.web.multipart.MultipartFile; - -import java.nio.file.Path; - -/** - * - * @author Jules Jacobsen - */ -public interface AnalysisService { - - AnalysisResponse createAnalysisJob(Analysis analysis); - - AnalysisResponse createAnalysisJobFromYaml(String analysisYaml); - - AnalysisResponse createVcf(long id, Path vcfPath); - - AnalysisResponse createPed(long id, Path pedPath); - - AnalysisResponse startAnalysis(long id); - - AnalysisResponse getAnalysisStatus(long id); - - void delete(long id); - - boolean exists(long id); - - Analysis getAnalysis(long id); - - Path getVcf(long id); - - Path getPed(long id); - - Path getResults(long id, OutputFormat outputFormat); - -} diff --git a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/service/AnalysisServiceDefaultImpl.java b/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/service/AnalysisServiceDefaultImpl.java deleted file mode 100644 index 1d492b7e6..000000000 --- a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/service/AnalysisServiceDefaultImpl.java +++ /dev/null @@ -1,119 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.rest.analysis.service; - -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.filters.FrequencyFilter; -import de.charite.compbio.exomiser.core.filters.PathogenicityFilter; -import de.charite.compbio.exomiser.core.filters.PriorityScoreFilter; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.core.writers.OutputFormat; -import de.charite.compbio.exomiser.rest.analysis.model.AnalysisResponse; -import de.charite.compbio.exomiser.rest.analysis.model.AnalysisStatus; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.stereotype.Service; - -import java.nio.file.Path; -import java.util.EnumSet; -import java.util.Map; -import java.util.concurrent.ConcurrentHashMap; -import java.util.concurrent.atomic.AtomicLong; - -/** - * @author Jules Jacobsen - */ -@Service -public class AnalysisServiceDefaultImpl implements AnalysisService { - - private static final Logger logger = LoggerFactory.getLogger(AnalysisServiceDefaultImpl.class); - - //TODO: make a better id - something like timestamp + random + serverId. Like the Twitter snowflake - private static final AtomicLong analysisId = new AtomicLong(System.currentTimeMillis() * 100000); - - //TODO: this should become a DAO - private final Map analysisMap = new ConcurrentHashMap<>(); - - @Override - public AnalysisResponse createAnalysisJob(Analysis analysis) { - long id = analysisId.incrementAndGet(); - analysisMap.put(id, analysis); - logger.info("Created analysis job {}", id); - return new AnalysisResponse(id, AnalysisStatus.AWAITING_VCF, "Analysis received."); - } - - @Override - public AnalysisResponse createAnalysisJobFromYaml(String analysisYaml) { - //TODO: Validate YAML transform into Analysis (use AnalysisFactory) - return createAnalysisJob(new Analysis()); - } - - @Override - public AnalysisResponse createVcf(long id, Path vcfPath) { - return null; - } - - @Override - public AnalysisResponse createPed(long id, Path pedPath) { - return null; - } - - @Override - public Analysis getAnalysis(long id) { - return analysisMap.get(id); - } - - @Override - public Path getVcf(long id) { - return null; - } - - @Override - public Path getPed(long id) { - return null; - } - - @Override - public Path getResults(long id, OutputFormat outputFormat) { - return null; - } - - @Override - public AnalysisResponse startAnalysis(long id) { - return null; - } - - @Override - public AnalysisResponse getAnalysisStatus(long id) { - return null; - } - - @Override - public void delete(long id) { - logger.info("Deleting analysis job {}", id); - } - - @Override - public boolean exists(long id) { - return false; - } -} diff --git a/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/AnalysisConfig.java b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/AnalysisConfig.java new file mode 100644 index 000000000..2362dbb51 --- /dev/null +++ b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/AnalysisConfig.java @@ -0,0 +1,59 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.analysis; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.core.env.Environment; + +import java.io.IOException; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; + +/** + * @author Jules Jacobsen + */ +@Configuration +public class AnalysisConfig { + + private static Logger logger = LoggerFactory.getLogger(AnalysisConfig.class); + + @Autowired + Environment environment; + + @Bean + Path analysisPath() { + Path analysisPath = Paths.get(environment.getProperty("exomiser.working-directory")); + try { + if (!analysisPath.toFile().exists()) { + logger.info("Setting up analysis path at {}", analysisPath); + Files.createDirectory(analysisPath); + } + } catch (IOException ex) { + logger.error("Unable to create directory for analyses {}", analysisPath, ex); + } + return analysisPath; + } +} diff --git a/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/ExomiserAnalysisServer.java b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/ExomiserAnalysisServer.java new file mode 100644 index 000000000..fd89bd736 --- /dev/null +++ b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/ExomiserAnalysisServer.java @@ -0,0 +1,35 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.analysis; + +import org.monarchinitiative.exomiser.autoconfigure.EnableExomiser; +import org.springframework.boot.SpringApplication; +import org.springframework.boot.autoconfigure.SpringBootApplication; + +@SpringBootApplication +@EnableExomiser +public class ExomiserAnalysisServer { + + public static void main(String[] args) { + SpringApplication.run(ExomiserAnalysisServer.class, args); + } + +} diff --git a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/api/AnalysisController.java b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/api/AnalysisController.java similarity index 75% rename from exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/api/AnalysisController.java rename to exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/api/AnalysisController.java index f04905cc9..b60234305 100644 --- a/exomiser-rest-analysis/src/main/java/de/charite/compbio/exomiser/rest/analysis/api/AnalysisController.java +++ b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/api/AnalysisController.java @@ -1,28 +1,29 @@ /* - * The Exomiser - A tool to annotate and prioritize variants + * The Exomiser - A tool to annotate and prioritize genomic variants * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . */ -package de.charite.compbio.exomiser.rest.analysis.api; +package org.monarchinitiative.exomiser.rest.analysis.api; -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.rest.analysis.model.AnalysisResponse; -import de.charite.compbio.exomiser.rest.analysis.model.AnalysisStatus; -import de.charite.compbio.exomiser.rest.analysis.service.AnalysisService; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.rest.analysis.model.AnalysisResponse; +import org.monarchinitiative.exomiser.rest.analysis.model.AnalysisStatus; +import org.monarchinitiative.exomiser.rest.analysis.service.AnalysisService; import org.slf4j.Logger; import org.slf4j.LoggerFactory; import org.springframework.beans.factory.annotation.Autowired; @@ -31,7 +32,11 @@ import org.springframework.web.bind.annotation.*; import org.springframework.web.multipart.MultipartFile; -import java.io.*; +import javax.inject.Named; +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.IOException; +import java.io.InputStreamReader; import java.nio.file.Files; import java.nio.file.Path; @@ -45,6 +50,7 @@ public class AnalysisController { private static final Logger logger = LoggerFactory.getLogger(AnalysisController.class); @Autowired + @Named("exomiserWorkingDirectory") private Path analysisPath; @Autowired @@ -70,7 +76,7 @@ public AnalysisResponse postAnalysis(@RequestBody String analysisYaml) throws Fi @RequestMapping(value = "/{analysisId}", method = RequestMethod.GET) public Analysis getAnalysis(@PathVariable long analysisId) { logger.info("Request for analysisId: {}", analysisId); - Analysis analysis = analysisService.getAnalysis(analysisId); + final Analysis analysis = analysisService.getAnalysis(analysisId); if (analysis == null) { logger.info("AnalysisId: {} not found", analysisId); @@ -118,7 +124,7 @@ public AnalysisResponse postAnalysis(@PathVariable("analysisId") long id, @Reque } private Path createAnalysisDirectory(long id) { - Path analysisDir = analysisPath.resolve(Long.toUnsignedString(id)); + final Path analysisDir = analysisPath.resolve(Long.toUnsignedString(id)); try { Files.createDirectories(analysisDir); } catch (IOException e) { @@ -129,7 +135,7 @@ private Path createAnalysisDirectory(long id) { } private Path getAnalysisDirectory(long id) { - Path analysisDir = analysisPath.resolve(Long.toUnsignedString(id)); + final Path analysisDir = analysisPath.resolve(Long.toUnsignedString(id)); if (!Files.exists(analysisDir)) { throw new UnknownAnalysisException("AnalysisId not found: " + id); } diff --git a/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/model/AnalysisResponse.java b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/model/AnalysisResponse.java new file mode 100644 index 000000000..946fe4f08 --- /dev/null +++ b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/model/AnalysisResponse.java @@ -0,0 +1,88 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.analysis.model; + +import com.fasterxml.jackson.annotation.JsonCreator; +import com.fasterxml.jackson.annotation.JsonGetter; +import com.fasterxml.jackson.annotation.JsonIgnoreProperties; +import com.fasterxml.jackson.annotation.JsonProperty; + +import java.util.Objects; + +/** + * @author Jules Jacobsen + */ +@JsonIgnoreProperties(ignoreUnknown=true) +public class AnalysisResponse { + + private final long id; + private final AnalysisStatus analysisStatus; + private final String message; + + @JsonCreator + public AnalysisResponse(@JsonProperty("id") long id, @JsonProperty("status") AnalysisStatus analysisStatus, @JsonProperty("message") String message) { + this.id = id; + this.analysisStatus = analysisStatus; + this.message = message; + } + + public long getId() { + return id; + } + +// @JsonGetter(value = "id_string") + public String getIdString() { + return Long.toString(id); + } + + @JsonGetter(value = "status") + public AnalysisStatus getAnalysisStatus() { + return analysisStatus; + } + + public String getMessage() { + return message; + } + + @Override + public boolean equals(Object o) { + if (this == o) return true; + if (o == null || getClass() != o.getClass()) return false; + AnalysisResponse that = (AnalysisResponse) o; + return id == that.id && + analysisStatus == that.analysisStatus && + Objects.equals(message, that.message); + } + + @Override + public int hashCode() { + return Objects.hash(id, analysisStatus, message); + } + + @Override + public String toString() { + return "AnalysisResponse{" + + "id=" + id + + ", analysisStatus=" + analysisStatus + + ", message='" + message + '\'' + + '}'; + } +} diff --git a/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/model/AnalysisStatus.java b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/model/AnalysisStatus.java new file mode 100644 index 000000000..23254371f --- /dev/null +++ b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/model/AnalysisStatus.java @@ -0,0 +1,29 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.analysis.model; + +/** + * @author Jules Jacobsen + */ +public enum AnalysisStatus { + AWAITING_VCF, AWAITING_PED, READY, QUEUED, PROCESSING, COMPLETED, INFO, ERROR +} + diff --git a/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/service/AnalysisService.java b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/service/AnalysisService.java new file mode 100644 index 000000000..f78c1bc6f --- /dev/null +++ b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/service/AnalysisService.java @@ -0,0 +1,59 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.analysis.service; + +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; +import org.monarchinitiative.exomiser.rest.analysis.model.AnalysisResponse; + +import java.nio.file.Path; + +/** + * + * @author Jules Jacobsen + */ +public interface AnalysisService { + + AnalysisResponse createAnalysisJob(Analysis analysis); + + AnalysisResponse createAnalysisJobFromYaml(String analysisYaml); + + AnalysisResponse createVcf(long id, Path vcfPath); + + AnalysisResponse createPed(long id, Path pedPath); + + AnalysisResponse startAnalysis(long id); + + AnalysisResponse getAnalysisStatus(long id); + + void delete(long id); + + boolean exists(long id); + + Analysis getAnalysis(long id); + + Path getVcf(long id); + + Path getPed(long id); + + Path getResults(long id, OutputFormat outputFormat); + +} diff --git a/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/service/AnalysisServiceDefaultImpl.java b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/service/AnalysisServiceDefaultImpl.java new file mode 100644 index 000000000..c29d5a8f6 --- /dev/null +++ b/exomiser-rest-analysis/src/main/java/org/monarchinitiative/exomiser/rest/analysis/service/AnalysisServiceDefaultImpl.java @@ -0,0 +1,114 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.analysis.service; + +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.writers.OutputFormat; +import org.monarchinitiative.exomiser.rest.analysis.model.AnalysisResponse; +import org.monarchinitiative.exomiser.rest.analysis.model.AnalysisStatus; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.stereotype.Service; + +import java.nio.file.Path; +import java.util.Map; +import java.util.concurrent.ConcurrentHashMap; +import java.util.concurrent.atomic.AtomicLong; + +/** + * @author Jules Jacobsen + */ +@Service +public class AnalysisServiceDefaultImpl implements AnalysisService { + + private static final Logger logger = LoggerFactory.getLogger(AnalysisServiceDefaultImpl.class); + + //TODO: make a better id - something like timestamp + random + serverId. Like the Twitter snowflake + private static final AtomicLong analysisId = new AtomicLong(System.currentTimeMillis() * 100000); + + //TODO: this should become a DAO + private final Map analysisMap = new ConcurrentHashMap<>(); + + + @Override + public synchronized AnalysisResponse createAnalysisJob(Analysis analysis) { + final long id = analysisId.incrementAndGet(); + analysisMap.put(id, analysis); + logger.info("Created analysis job {}", id); + return new AnalysisResponse(id, AnalysisStatus.AWAITING_VCF, "Analysis received."); + } + + @Override + public AnalysisResponse createAnalysisJobFromYaml(String analysisYaml) { + //TODO: Validate YAML transform into Analysis (use AnalysisFactory) + return createAnalysisJob(Analysis.builder().build()); + } + + @Override + public AnalysisResponse createVcf(long id, Path vcfPath) { + return null; + } + + @Override + public AnalysisResponse createPed(long id, Path pedPath) { + return null; + } + + @Override + public Analysis getAnalysis(long id) { + return analysisMap.get(id); + } + + @Override + public Path getVcf(long id) { + return null; + } + + @Override + public Path getPed(long id) { + return null; + } + + @Override + public Path getResults(long id, OutputFormat outputFormat) { + return null; + } + + @Override + public AnalysisResponse startAnalysis(long id) { + return null; + } + + @Override + public AnalysisResponse getAnalysisStatus(long id) { + return null; + } + + @Override + public void delete(long id) { + logger.info("Deleting analysis job {}", id); + } + + @Override + public boolean exists(long id) { + return false; + } +} diff --git a/exomiser-rest-analysis/src/main/resources/application.properties b/exomiser-rest-analysis/src/main/resources/application.properties index c7f91e6c2..40ca4b419 100644 --- a/exomiser-rest-analysis/src/main/resources/application.properties +++ b/exomiser-rest-analysis/src/main/resources/application.properties @@ -16,18 +16,20 @@ # You should have received a copy of the GNU Affero General Public License # along with this program. If not, see . # +spring.application.name=exomiser-analysis-server server.context-path=/exomiser/api server.port=8084 server.display-name=Exomiser Analysis Server #Absolute system path where the server is installed -exomiser.rootDir=${project.build.testOutputDirectory} +exomiser.data-directory=${project.build.testOutputDirectory} #Path where the server will store the input and output files for an analysis -exomiser.analysisPath=${exomiser.rootDir}/analyses +exomiser.working-directory=${exomiser.data-directory}/analyses +exomiser.h2.url=jdbc:h2:mem:exomiser #VCF multi-sample files for whole genomes could be pretty large -multipart.enabled=true -multipart.maxFileSize=-1 +spring.http.multipart.enabled=true +spring.http.multipart.maxFileSize=-1 #multipart.maxRequestSize=5MB #multipart.location=/temp \ No newline at end of file diff --git a/exomiser-rest-analysis/src/test/java/de/charite/compbio/exomiser/rest/analysis/ExomiserRestAnalysisApplicationTests.java b/exomiser-rest-analysis/src/test/java/de/charite/compbio/exomiser/rest/analysis/ExomiserRestAnalysisApplicationTests.java deleted file mode 100644 index 1e5f496c6..000000000 --- a/exomiser-rest-analysis/src/test/java/de/charite/compbio/exomiser/rest/analysis/ExomiserRestAnalysisApplicationTests.java +++ /dev/null @@ -1,46 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.rest.analysis; - -import org.junit.Test; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.boot.test.IntegrationTest; -import org.springframework.context.annotation.PropertySource; -import org.springframework.test.context.web.WebAppConfiguration; -import org.springframework.boot.test.SpringApplicationConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; - -import java.nio.file.Files; -import java.nio.file.Path; - -import static org.hamcrest.CoreMatchers.is; -import static org.hamcrest.MatcherAssert.assertThat; - -@RunWith(SpringJUnit4ClassRunner.class) -@SpringApplicationConfiguration(classes = ExomiserRestAnalysisApplication.class) -@WebAppConfiguration -public class ExomiserRestAnalysisApplicationTests { - - @Test - public void contextLoads() { - } - -} diff --git a/exomiser-rest-analysis/src/test/java/de/charite/compbio/exomiser/rest/analysis/api/AnalysisControllerTest.java b/exomiser-rest-analysis/src/test/java/de/charite/compbio/exomiser/rest/analysis/api/AnalysisControllerTest.java deleted file mode 100644 index f590072d1..000000000 --- a/exomiser-rest-analysis/src/test/java/de/charite/compbio/exomiser/rest/analysis/api/AnalysisControllerTest.java +++ /dev/null @@ -1,183 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ - -package de.charite.compbio.exomiser.rest.analysis.api; - -import com.fasterxml.jackson.annotation.JsonIgnore; -import com.fasterxml.jackson.annotation.JsonTypeInfo; -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.core.Version; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.SerializationFeature; -import com.fasterxml.jackson.databind.module.SimpleModule; -import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; -import com.fasterxml.jackson.datatype.jdk7.Jdk7Module; -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.filters.*; -import de.charite.compbio.exomiser.core.model.frequency.FrequencySource; -import de.charite.compbio.exomiser.core.model.pathogenicity.PathogenicitySource; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.exomiser.rest.analysis.ExomiserConfig; -import de.charite.compbio.exomiser.rest.analysis.ExomiserRestAnalysisApplication; -import de.charite.compbio.exomiser.rest.analysis.model.AnalysisResponse; -import org.codehaus.groovy.tools.shell.IO; -import org.junit.*; -import org.junit.rules.TemporaryFolder; -import org.junit.runner.RunWith; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.boot.json.JacksonJsonParser; -import org.springframework.boot.test.SpringApplicationConfiguration; -import org.springframework.mock.web.MockMultipartFile; -import org.springframework.test.context.ContextConfiguration; -import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; -import org.springframework.test.context.web.WebAppConfiguration; -import org.springframework.test.web.servlet.MockMvc; -import org.springframework.test.web.servlet.MvcResult; -import org.springframework.test.web.servlet.request.MockMvcRequestBuilders; -import org.springframework.test.web.servlet.setup.MockMvcBuilders; -import org.springframework.web.context.WebApplicationContext; -import org.springframework.web.multipart.MultipartFile; - -import javax.ws.rs.core.Context; -import javax.ws.rs.core.MediaType; - -import java.io.FileInputStream; -import java.io.IOException; -import java.io.InputStream; -import java.io.RandomAccessFile; -import java.nio.channels.Channels; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.EnumSet; - -import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.*; -import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.*; - -/** - * @author Jules Jacobsen - */ -@RunWith(SpringJUnit4ClassRunner.class) -@WebAppConfiguration -@ContextConfiguration(classes = {ExomiserRestAnalysisApplication.class, ExomiserConfig.class}) -public class AnalysisControllerTest { - - @Autowired - private WebApplicationContext webApplicationContext; - - private MockMvc mockMvc; - - private String jsonAnalysis = ""; - - private ObjectMapper mapper; - - @Before - public void setup() throws IOException{ - mockMvc = MockMvcBuilders.webAppContextSetup(webApplicationContext).build(); - - Analysis analysis = new Analysis(); - analysis.setFrequencySources(FrequencySource.ALL_ESP_SOURCES); - analysis.setPathogenicitySources(EnumSet.of(PathogenicitySource.POLYPHEN, PathogenicitySource.CADD)); - //TODO: get these to serialise -// analysis.addStep(new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, 0.501f)); -// analysis.addStep(new FrequencyFilter(1.0f)); -// analysis.addStep(new PathogenicityFilter(true)); - - mapper = new ObjectMapper(); - mapper.registerModule(new Jdk7Module()); - mapper.registerModule(new MyModule()); - mapper.configure(SerializationFeature.INDENT_OUTPUT, true); -// mapper.addMixIn(VariantFilter.class, VariantFilterMixIn.class); - //TODO: need to write custom AnalysisMapper. -// mapper.enableDefaultTyping(ObjectMapper.DefaultTyping.NON_FINAL, JsonTypeInfo.As.EXISTING_PROPERTY); // all non-final types - - try { - jsonAnalysis = mapper.writeValueAsString(analysis); - } catch (JsonProcessingException ex) { - } - System.out.println("Created json analysis: " + jsonAnalysis); - } - - public class MyModule extends SimpleModule { - public MyModule() { - super(); - } - - @Override - public void setupModule(SetupContext context) { -// context.setMixInAnnotations(VariantFilter.class, VariantFilterMixIn.class); - // and other set up, if any - } - } - - abstract class VariantFilterMixIn { - VariantFilterMixIn(){} - - @JsonIgnore abstract FilterType getFilterType(); - - } - - - @Test - public void testGetAnalysis_noAnalysisId() throws Exception { - mockMvc.perform(get("/analysis")) - .andExpect(status().isOk()) - .andExpect(mvcResult -> mvcResult - .getResponse() - .getContentAsString() - .contentEquals("You can upload an analysis YAML file by posting to this URL.")); - } - - @Test - public void testGetAnalysis_unKnownAnalysisId() throws Exception { - mockMvc.perform(get("/analysis/{analysisId}", 1).accept("application/json")) - .andExpect(status().isNotFound()); - } - - @Test - public void testGetAnalysis_knownAnalysisId() throws Exception { - - long analysisId = 0; - - MvcResult result = mockMvc.perform(post("/analysis") - .content(jsonAnalysis) - .contentType(MediaType.APPLICATION_JSON)) - .andExpect(status().isOk()) - .andReturn(); - - String responseBody = result.getResponse().getContentAsString(); - - AnalysisResponse analysisResponse = mapper.readValue(responseBody, AnalysisResponse.class); - System.out.println("Got " + analysisResponse); - - mockMvc.perform(get("/analysis/{analysisId}", analysisResponse.getId()).accept("application/json")) - .andExpect(status().isOk()); - } - - @Test - public void testPostAnalysis_jsonBody() throws Exception { - mockMvc.perform(post("/analysis") - .content(jsonAnalysis) - .contentType(MediaType.APPLICATION_JSON)) - .andExpect(status().isOk()) - .andExpect(mvcResult -> { - System.out.println(mvcResult.getResponse().getContentAsString());}); - } - -} \ No newline at end of file diff --git a/exomiser-rest-analysis/src/test/java/org/monarchinitiative/exomiser/rest/analysis/ExomiserAnalysisServerTest.java b/exomiser-rest-analysis/src/test/java/org/monarchinitiative/exomiser/rest/analysis/ExomiserAnalysisServerTest.java new file mode 100644 index 000000000..795ac5842 --- /dev/null +++ b/exomiser-rest-analysis/src/test/java/org/monarchinitiative/exomiser/rest/analysis/ExomiserAnalysisServerTest.java @@ -0,0 +1,37 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.analysis; + +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.test.ExomiserStubDataConfig; +import org.springframework.boot.test.context.SpringBootTest; +import org.springframework.test.context.junit4.SpringRunner; + +@RunWith(SpringRunner.class) +@SpringBootTest(classes = {ExomiserAnalysisServer.class, ExomiserStubDataConfig.class}) +public class ExomiserAnalysisServerTest { + + @Test + public void contextLoads() { + } + +} diff --git a/exomiser-rest-analysis/src/test/java/org/monarchinitiative/exomiser/rest/analysis/api/AnalysisControllerTest.java b/exomiser-rest-analysis/src/test/java/org/monarchinitiative/exomiser/rest/analysis/api/AnalysisControllerTest.java new file mode 100644 index 000000000..6a7d0188f --- /dev/null +++ b/exomiser-rest-analysis/src/test/java/org/monarchinitiative/exomiser/rest/analysis/api/AnalysisControllerTest.java @@ -0,0 +1,178 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.analysis.api; + +import com.fasterxml.jackson.annotation.JsonIgnore; +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import com.fasterxml.jackson.databind.module.SimpleModule; +import com.fasterxml.jackson.datatype.jdk7.Jdk7Module; +import org.junit.Before; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.core.analysis.Analysis; +import org.monarchinitiative.exomiser.core.filters.FilterType; +import org.monarchinitiative.exomiser.core.filters.FrequencyFilter; +import org.monarchinitiative.exomiser.core.filters.PathogenicityFilter; +import org.monarchinitiative.exomiser.core.filters.PriorityScoreFilter; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.rest.analysis.ExomiserAnalysisServer; +import org.monarchinitiative.exomiser.rest.analysis.model.AnalysisResponse; +import org.monarchinitiative.exomiser.test.ExomiserStubDataConfig; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.beans.factory.annotation.Value; +import org.springframework.boot.jackson.JsonComponent; +import org.springframework.boot.test.context.SpringBootTest; +import org.springframework.test.context.junit4.SpringRunner; +import org.springframework.test.web.servlet.MockMvc; +import org.springframework.test.web.servlet.MvcResult; +import org.springframework.test.web.servlet.setup.MockMvcBuilders; +import org.springframework.web.context.WebApplicationContext; + +import javax.ws.rs.core.MediaType; +import java.io.IOException; +import java.util.Arrays; +import java.util.EnumSet; + +import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get; +import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.post; +import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status; + +/** + * @author Jules Jacobsen + */ +@RunWith(SpringRunner.class) +@SpringBootTest(classes = {ExomiserAnalysisServer.class, ExomiserStubDataConfig.class}, webEnvironment = SpringBootTest.WebEnvironment.RANDOM_PORT) +public class AnalysisControllerTest { + + @Value("${local.server.port}") + private int port; + + @Autowired + private WebApplicationContext webApplicationContext; + + private MockMvc mockMvc; + + private String jsonAnalysis = ""; + + private ObjectMapper mapper; + + @Before + public void setup() throws IOException{ + mockMvc = MockMvcBuilders.webAppContextSetup(webApplicationContext).build(); + + Analysis analysis = Analysis.builder() + .hpoIds(Arrays.asList("HP:000001", "HP:000002")) + .frequencySources(FrequencySource.ALL_ESP_SOURCES) + .pathogenicitySources(EnumSet.of(PathogenicitySource.POLYPHEN, PathogenicitySource.CADD)) + //TODO: get these to de/serialise + .addStep(new PriorityScoreFilter(PriorityType.HIPHIVE_PRIORITY, 0.501f)) + .addStep(new FrequencyFilter(1.0f)) + .addStep(new PathogenicityFilter(true)) + .build(); + + mapper = new ObjectMapper(); + mapper.registerModule(new Jdk7Module()); + mapper.registerModule(new MyModule()); + mapper.configure(SerializationFeature.INDENT_OUTPUT, true); +// mapper.enable(SerializationFeature.WRAP_ROOT_VALUE); +// mapper.addMixIn(VariantFilter.class, VariantFilterMixIn.class); + //TODO: need to write custom AnalysisMapper. +// mapper.enableDefaultTyping(ObjectMapper.DefaultTyping.NON_FINAL, JsonTypeInfo.As.EXISTING_PROPERTY); // all non-final types + + try { + jsonAnalysis = mapper.writeValueAsString(analysis); + } catch (JsonProcessingException ex) { + } + System.out.println("Created json analysis:\n" + jsonAnalysis); + } + + @JsonComponent + public class MyModule extends SimpleModule { + public MyModule() { + super(); + } + + @Override + public void setupModule(SetupContext context) { +// context.setMixInAnnotations(VariantFilter.class, VariantFilterMixIn.class); + // and other set up, if any + } + } + + abstract class VariantFilterMixIn { + VariantFilterMixIn(){} + + @JsonIgnore abstract FilterType getFilterType(); + + } + + + @Test + public void testGetAnalysis_noAnalysisId() throws Exception { + mockMvc.perform(get("/analysis")) + .andExpect(status().isOk()) + .andExpect(mvcResult -> mvcResult + .getResponse() + .getContentAsString() + .contentEquals("You can upload an analysis YAML file by posting to this URL.")); + } + + @Test + public void testGetAnalysis_unKnownAnalysisId() throws Exception { + mockMvc.perform(get("/analysis/{analysisId}", 1).accept("application/json")) + .andExpect(status().isNotFound()); + } + + @Test + public void testGetAnalysis_knownAnalysisId() throws Exception { + + long analysisId = 0; + + MvcResult result = mockMvc.perform(post("/analysis") + .content(jsonAnalysis) + .contentType(MediaType.APPLICATION_JSON)) + .andExpect(status().isOk()) + .andReturn(); + + String responseBody = result.getResponse().getContentAsString(); + + AnalysisResponse analysisResponse = mapper.readValue(responseBody, AnalysisResponse.class); + System.out.println("Got " + analysisResponse); + + mockMvc.perform(get("/analysis/{analysisId}", analysisResponse.getId()).accept("application/json")) + .andExpect(status().isOk()); + } + + @Test + public void testPostAnalysis_jsonBody() throws Exception { + mockMvc.perform(post("/analysis") + .content(jsonAnalysis) + .contentType(MediaType.APPLICATION_JSON)) + .andExpect(status().isOk()) + .andExpect(mvcResult -> { + System.out.println(mvcResult.getResponse().getContentAsString());}); + } + +} \ No newline at end of file diff --git a/exomiser-rest-analysis/src/test/resources/application.properties b/exomiser-rest-analysis/src/test/resources/application.properties index 051412576..9d5b0303a 100644 --- a/exomiser-rest-analysis/src/test/resources/application.properties +++ b/exomiser-rest-analysis/src/test/resources/application.properties @@ -16,18 +16,20 @@ # You should have received a copy of the GNU Affero General Public License # along with this program. If not, see . # +spring.application.name=exomiser-analysis-server server.context-path=/exomiser/api server.port=0 server.display-name=Exomiser Analysis Server #Absolute system path where the server is installed -exomiser.rootDir=${project.build.testOutputDirectory} +exomiser.data-directory=${project.build.testOutputDirectory}/data #Path where the server will store the input and output files for an analysis -exomiser.analysisPath=${exomiser.rootDir}/testData/analyses +exomiser.working-directory=${exomiser.data-directory}/testData/analyses +exomiser.h2.url=jdbc:h2:mem:exomiser #VCF multi-sample files for whole genomes could be pretty large -multipart.enabled=true -multipart.maxFileSize=-1 +spring.http.multipart.enabled=true +spring.http.multipart.maxFileSize=-1 #multipart.maxRequestSize=5MB #multipart.location=/temp \ No newline at end of file diff --git a/exomiser-rest-analysis/src/test/resources/logback.groovy b/exomiser-rest-analysis/src/test/resources/logback.groovy index 1bc0c7523..c18d4836c 100644 --- a/exomiser-rest-analysis/src/test/resources/logback.groovy +++ b/exomiser-rest-analysis/src/test/resources/logback.groovy @@ -23,7 +23,7 @@ appender("CONSOLE", ConsoleAppender) { } } -logger("de.charite.compbio.exomiser", INFO) +logger("org.monarchinitiative.exomiser", INFO) logger("org.thymeleaf", ERROR) root(INFO, ["CONSOLE"]) \ No newline at end of file diff --git a/exomiser-rest-prioritiser/.mvn/wrapper/maven-wrapper.jar b/exomiser-rest-prioritiser/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-rest-prioritiser/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-rest-prioritiser/.mvn/wrapper/maven-wrapper.properties b/exomiser-rest-prioritiser/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/exomiser-rest-prioritiser/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/exomiser-rest-prioritiser/mvnw b/exomiser-rest-prioritiser/mvnw new file mode 100644 index 000000000..5bf251c07 --- /dev/null +++ b/exomiser-rest-prioritiser/mvnw @@ -0,0 +1,225 @@ +#!/bin/sh +# ---------------------------------------------------------------------------- +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +# ---------------------------------------------------------------------------- + +# ---------------------------------------------------------------------------- +# Maven2 Start Up Batch script +# +# Required ENV vars: +# ------------------ +# JAVA_HOME - location of a JDK home dir +# +# Optional ENV vars +# ----------------- +# M2_HOME - location of maven2's installed home dir +# MAVEN_OPTS - parameters passed to the Java VM when running Maven +# e.g. to debug Maven itself, use +# set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +# MAVEN_SKIP_RC - flag to disable loading of mavenrc files +# ---------------------------------------------------------------------------- + +if [ -z "$MAVEN_SKIP_RC" ] ; then + + if [ -f /etc/mavenrc ] ; then + . /etc/mavenrc + fi + + if [ -f "$HOME/.mavenrc" ] ; then + . "$HOME/.mavenrc" + fi + +fi + +# OS specific support. $var _must_ be set to either true or false. +cygwin=false; +darwin=false; +mingw=false +case "`uname`" in + CYGWIN*) cygwin=true ;; + MINGW*) mingw=true;; + Darwin*) darwin=true + # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home + # See https://developer.apple.com/library/mac/qa/qa1170/_index.html + if [ -z "$JAVA_HOME" ]; then + if [ -x "/usr/libexec/java_home" ]; then + export JAVA_HOME="`/usr/libexec/java_home`" + else + export JAVA_HOME="/Library/Java/Home" + fi + fi + ;; +esac + +if [ -z "$JAVA_HOME" ] ; then + if [ -r /etc/gentoo-release ] ; then + JAVA_HOME=`java-config --jre-home` + fi +fi + +if [ -z "$M2_HOME" ] ; then + ## resolve links - $0 may be a link to maven's home + PRG="$0" + + # need this for relative symlinks + while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG="`dirname "$PRG"`/$link" + fi + done + + saveddir=`pwd` + + M2_HOME=`dirname "$PRG"`/.. + + # make it fully qualified + M2_HOME=`cd "$M2_HOME" && pwd` + + cd "$saveddir" + # echo Using m2 at $M2_HOME +fi + +# For Cygwin, ensure paths are in UNIX format before anything is touched +if $cygwin ; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --unix "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --unix "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --unix "$CLASSPATH"` +fi + +# For Migwn, ensure paths are in UNIX format before anything is touched +if $mingw ; then + [ -n "$M2_HOME" ] && + M2_HOME="`(cd "$M2_HOME"; pwd)`" + [ -n "$JAVA_HOME" ] && + JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`" + # TODO classpath? +fi + +if [ -z "$JAVA_HOME" ]; then + javaExecutable="`which javac`" + if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then + # readlink(1) is not available as standard on Solaris 10. + readLink=`which readlink` + if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then + if $darwin ; then + javaHome="`dirname \"$javaExecutable\"`" + javaExecutable="`cd \"$javaHome\" && pwd -P`/javac" + else + javaExecutable="`readlink -f \"$javaExecutable\"`" + fi + javaHome="`dirname \"$javaExecutable\"`" + javaHome=`expr "$javaHome" : '\(.*\)/bin'` + JAVA_HOME="$javaHome" + export JAVA_HOME + fi + fi +fi + +if [ -z "$JAVACMD" ] ; then + if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + else + JAVACMD="`which java`" + fi +fi + +if [ ! -x "$JAVACMD" ] ; then + echo "Error: JAVA_HOME is not defined correctly." >&2 + echo " We cannot execute $JAVACMD" >&2 + exit 1 +fi + +if [ -z "$JAVA_HOME" ] ; then + echo "Warning: JAVA_HOME environment variable is not set." +fi + +CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher + +# traverses directory structure from process work directory to filesystem root +# first directory with .mvn subdirectory is considered project base directory +find_maven_basedir() { + + if [ -z "$1" ] + then + echo "Path not specified to find_maven_basedir" + return 1 + fi + + basedir="$1" + wdir="$1" + while [ "$wdir" != '/' ] ; do + if [ -d "$wdir"/.mvn ] ; then + basedir=$wdir + break + fi + # workaround for JBEAP-8937 (on Solaris 10/Sparc) + if [ -d "${wdir}" ]; then + wdir=`cd "$wdir/.."; pwd` + fi + # end of workaround + done + echo "${basedir}" +} + +# concatenates all lines of a file +concat_lines() { + if [ -f "$1" ]; then + echo "$(tr -s '\n' ' ' < "$1")" + fi +} + +BASE_DIR=`find_maven_basedir "$(pwd)"` +if [ -z "$BASE_DIR" ]; then + exit 1; +fi + +export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"} +echo $MAVEN_PROJECTBASEDIR +MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS" + +# For Cygwin, switch paths to Windows format before running java +if $cygwin; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --path --windows "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --windows "$CLASSPATH"` + [ -n "$MAVEN_PROJECTBASEDIR" ] && + MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"` +fi + +WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +exec "$JAVACMD" \ + $MAVEN_OPTS \ + -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \ + "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \ + ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@" diff --git a/exomiser-rest-prioritiser/mvnw.cmd b/exomiser-rest-prioritiser/mvnw.cmd new file mode 100644 index 000000000..019bd74d7 --- /dev/null +++ b/exomiser-rest-prioritiser/mvnw.cmd @@ -0,0 +1,143 @@ +@REM ---------------------------------------------------------------------------- +@REM Licensed to the Apache Software Foundation (ASF) under one +@REM or more contributor license agreements. See the NOTICE file +@REM distributed with this work for additional information +@REM regarding copyright ownership. The ASF licenses this file +@REM to you under the Apache License, Version 2.0 (the +@REM "License"); you may not use this file except in compliance +@REM with the License. You may obtain a copy of the License at +@REM +@REM http://www.apache.org/licenses/LICENSE-2.0 +@REM +@REM Unless required by applicable law or agreed to in writing, +@REM software distributed under the License is distributed on an +@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +@REM KIND, either express or implied. See the License for the +@REM specific language governing permissions and limitations +@REM under the License. +@REM ---------------------------------------------------------------------------- + +@REM ---------------------------------------------------------------------------- +@REM Maven2 Start Up Batch script +@REM +@REM Required ENV vars: +@REM JAVA_HOME - location of a JDK home dir +@REM +@REM Optional ENV vars +@REM M2_HOME - location of maven2's installed home dir +@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands +@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a key stroke before ending +@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven +@REM e.g. to debug Maven itself, use +@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files +@REM ---------------------------------------------------------------------------- + +@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on' +@echo off +@REM enable echoing my setting MAVEN_BATCH_ECHO to 'on' +@if "%MAVEN_BATCH_ECHO%" == "on" echo %MAVEN_BATCH_ECHO% + +@REM set %HOME% to equivalent of $HOME +if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%") + +@REM Execute a user defined script before this one +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre +@REM check for pre script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat" +if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd" +:skipRcPre + +@setlocal + +set ERROR_CODE=0 + +@REM To isolate internal variables from possible post scripts, we use another setlocal +@setlocal + +@REM ==== START VALIDATION ==== +if not "%JAVA_HOME%" == "" goto OkJHome + +echo. +echo Error: JAVA_HOME not found in your environment. >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +:OkJHome +if exist "%JAVA_HOME%\bin\java.exe" goto init + +echo. +echo Error: JAVA_HOME is set to an invalid directory. >&2 +echo JAVA_HOME = "%JAVA_HOME%" >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +@REM ==== END VALIDATION ==== + +:init + +@REM Find the project base dir, i.e. the directory that contains the folder ".mvn". +@REM Fallback to current working directory if not found. + +set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR% +IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir + +set EXEC_DIR=%CD% +set WDIR=%EXEC_DIR% +:findBaseDir +IF EXIST "%WDIR%"\.mvn goto baseDirFound +cd .. +IF "%WDIR%"=="%CD%" goto baseDirNotFound +set WDIR=%CD% +goto findBaseDir + +:baseDirFound +set MAVEN_PROJECTBASEDIR=%WDIR% +cd "%EXEC_DIR%" +goto endDetectBaseDir + +:baseDirNotFound +set MAVEN_PROJECTBASEDIR=%EXEC_DIR% +cd "%EXEC_DIR%" + +:endDetectBaseDir + +IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig + +@setlocal EnableExtensions EnableDelayedExpansion +for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a +@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS% + +:endReadAdditionalConfig + +SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe" + +set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar" +set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %* +if ERRORLEVEL 1 goto error +goto end + +:error +set ERROR_CODE=1 + +:end +@endlocal & set ERROR_CODE=%ERROR_CODE% + +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost +@REM check for post script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat" +if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd" +:skipRcPost + +@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on' +if "%MAVEN_BATCH_PAUSE%" == "on" pause + +if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE% + +exit /B %ERROR_CODE% diff --git a/exomiser-rest-prioritiser/pom.xml b/exomiser-rest-prioritiser/pom.xml new file mode 100644 index 000000000..b554058d2 --- /dev/null +++ b/exomiser-rest-prioritiser/pom.xml @@ -0,0 +1,106 @@ + + + + + 4.0.0 + + + org.monarchinitiative + exomiser + 8.0.0 + + + exomiser-rest-prioritiser + + + + UTF-8 + 1.8 + + + + + org.monarchinitiative + exomiser-spring-boot-starter + ${project.parent.version} + + + org.monarchinitiative + exomiser-spring-boot-test + ${project.parent.version} + test + + + org.springframework.boot + spring-boot-starter-web + + + org.springframework.boot + spring-boot-starter-actuator + + + org.springframework.boot + spring-boot-starter-test + test + + + org.springframework.restdocs + spring-restdocs-mockmvc + test + + + + + + + src/test/resources + true + + + + + src/main/resources + + true + + + + + org.springframework.boot + spring-boot-maven-plugin + ${spring-boot.version} + + true + + + + + repackage + build-info + + + + + + + + \ No newline at end of file diff --git a/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/ExomiserPrioritiserServer.java b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/ExomiserPrioritiserServer.java new file mode 100644 index 000000000..ed694bd69 --- /dev/null +++ b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/ExomiserPrioritiserServer.java @@ -0,0 +1,38 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.prioritiser; + +import org.monarchinitiative.exomiser.autoconfigure.EnableExomiser; +import org.springframework.boot.SpringApplication; +import org.springframework.boot.autoconfigure.SpringBootApplication; + +/** + * @author Jules Jacobsen + */ +@SpringBootApplication +@EnableExomiser +public class ExomiserPrioritiserServer { + + public static void main(String[] args) { + SpringApplication.run(ExomiserPrioritiserServer.class, args); + } + +} diff --git a/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/MalformedInputException.java b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/MalformedInputException.java new file mode 100644 index 000000000..397ef02bf --- /dev/null +++ b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/MalformedInputException.java @@ -0,0 +1,47 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.prioritiser.api; + +import org.springframework.http.HttpStatus; +import org.springframework.web.bind.annotation.ResponseStatus; + +/** + * @author Jules Jacobsen + */ +@ResponseStatus(HttpStatus.NOT_ACCEPTABLE) +public class MalformedInputException extends RuntimeException { + + public MalformedInputException() { + super(); + } + + public MalformedInputException(String message) { + super(message); + } + + public MalformedInputException(String message, Throwable cause) { + super(message, cause); + } + + public MalformedInputException(Throwable cause) { + super(cause); + } +} diff --git a/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/PrioritiserController.java b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/PrioritiserController.java new file mode 100644 index 000000000..984c18fa7 --- /dev/null +++ b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/PrioritiserController.java @@ -0,0 +1,153 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.prioritiser.api; + +import org.monarchinitiative.exomiser.core.genome.GeneFactory; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; +import org.monarchinitiative.exomiser.core.prioritisers.HiPhiveOptions; +import org.monarchinitiative.exomiser.core.prioritisers.Prioritiser; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityFactory; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityResult; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.http.MediaType; +import org.springframework.web.bind.annotation.GetMapping; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.bind.annotation.RestController; + +import java.time.Duration; +import java.time.Instant; +import java.util.Comparator; +import java.util.LinkedHashMap; +import java.util.List; +import java.util.Map; +import java.util.function.Function; +import java.util.stream.Stream; + +import static com.google.common.collect.ImmutableList.toImmutableList; +import static com.google.common.collect.ImmutableMap.toImmutableMap; + +/** + * @author Jules Jacobsen + */ +@RestController +public class PrioritiserController { + + private static final Logger logger = LoggerFactory.getLogger(PrioritiserController.class); + + private final PriorityFactory priorityFactory; + private final Map geneIdentifiers; + + @Autowired + public PrioritiserController(PriorityFactory priorityFactory, GeneFactory geneFactory) { + this.priorityFactory = priorityFactory; + this.geneIdentifiers = geneFactory.createKnownGeneIds().stream() + .filter(GeneIdentifier::hasEntrezId) + .collect(toImmutableMap(GeneIdentifier::getEntrezIdAsInteger, Function.identity())); + logger.info("Created GeneIdentifier cache with {} entries", geneIdentifiers.size()); + } + + @GetMapping(value = "about") + public String about() { + return "This service will return a collection of prioritiser results for any given set of:" + + "\n\t - HPO identifiers e.g. HPO:00001" + + "\n\t - Entrez gene identifiers e.g. 23364" + + "\n\t - Specified prioritiser e.g. hiphive along with any prioritiser specific commands e.g. human,mouse,fish,ppi"; + } + + @GetMapping(value = "", produces = MediaType.APPLICATION_JSON_UTF8_VALUE) + public PrioritiserResultSet prioritise(@RequestParam(value = "phenotypes") List phenotypes, + @RequestParam(value = "genes", required = false, defaultValue = "") List genesIds, + @RequestParam(value = "prioritiser") String prioritiserName, + @RequestParam(value = "prioritiser-params", required = false, defaultValue = "") String prioritiserParams, + @RequestParam(value = "limit", required = false, defaultValue = "0") Integer limit + ) { + + logger.info("phenotypes: {}({}) genes: {} prioritiser: {} prioritiser-params: {}", phenotypes, phenotypes.size(), genesIds, prioritiserName, prioritiserParams); + + Instant start = Instant.now(); + + Prioritiser prioritiser = parsePrioritser(prioritiserName, prioritiserParams); + List uniquePhenotypes = phenotypes.stream().distinct().collect(toImmutableList()); + List genes = parseGeneIdentifiers(genesIds); + List results = runLimitAndCollectResults(prioritiser, uniquePhenotypes, genes, limit); + + Instant end = Instant.now(); + Duration duration = Duration.between(start, end); + + Map params = new LinkedHashMap<>(); + params.put("phenotypes", phenotypes.toString()); + params.put("genes", genesIds.toString()); + params.put("prioritiser", prioritiserName); + params.put("prioritiser-params", prioritiserParams); + params.put("limit", limit.toString()); + + return new PrioritiserResultSet(params, duration.toMillis(), results); + } + + private Prioritiser parsePrioritser(String prioritiserName, String prioritiserParams) { + switch(prioritiserName) { + case "phenix": + return priorityFactory.makePhenixPrioritiser(); + case "phive": + return priorityFactory.makePhivePrioritiser(); + case "hiphive": + default: + HiPhiveOptions hiPhiveOptions = HiPhiveOptions.builder() + .runParams(prioritiserParams) + .build(); + return priorityFactory.makeHiPhivePrioritiser(hiPhiveOptions); + } + } + + private List parseGeneIdentifiers(List genesIds) { + if (genesIds.isEmpty()) { + logger.info("Gene identifiers not specified - will compare against all known genes."); + //If not specified, we'll assume they want to use the whole genome. Should save people a lot of typing. + //n.b. Gene is mutable so these can't be cached and returned. + return geneIdentifiers.values().parallelStream() + .map(Gene::new) + .collect(toImmutableList()); + } + // This is a hack - really the Prioritiser should only work on GeneIds, but currently this isn't possible as + // OmimPrioritiser uses some properties of Gene + return genesIds.stream() + .map(id -> new Gene(geneIdentifiers.getOrDefault(id, unrecognisedGeneIdentifier(id)))) + .collect(toImmutableList()); + } + + private GeneIdentifier unrecognisedGeneIdentifier(Integer id) { + return GeneIdentifier.builder().geneSymbol("GENE:" + id).build(); + } + + private List runLimitAndCollectResults(Prioritiser prioritiser, List phenotypes, List genes, int limit) { + Stream resultsStream = prioritiser.prioritise(phenotypes, genes) + .sorted(Comparator.naturalOrder()); + logger.info("Finished {}", prioritiser.getPriorityType()); + if (limit == 0) { + return resultsStream.collect(toImmutableList()); + } + return resultsStream.limit(limit).collect(toImmutableList()); + } + +} diff --git a/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/PrioritiserResultSet.java b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/PrioritiserResultSet.java new file mode 100644 index 000000000..0efd76c26 --- /dev/null +++ b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/api/PrioritiserResultSet.java @@ -0,0 +1,55 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.prioritiser.api; + +import org.monarchinitiative.exomiser.core.prioritisers.PriorityResult; + +import java.util.List; +import java.util.Map; + +/** + * @author Jules Jacobsen + */ +public class PrioritiserResultSet { + + final Map params; + final long queryTime; + final List results; + + public PrioritiserResultSet(Map params, long queryTime, List results) { + this.params = params; + this.queryTime = queryTime; + this.results = results; + } + + public Map getParams() { + return params; + } + + public long getQueryTime() { + return queryTime; + } + + public List getResults() { + return results; + } + +} diff --git a/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/parsers/HgncParser.java b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/parsers/HgncParser.java new file mode 100644 index 000000000..4145d5a38 --- /dev/null +++ b/exomiser-rest-prioritiser/src/main/java/org/monarchinitiative/exomiser/rest/prioritiser/parsers/HgncParser.java @@ -0,0 +1,123 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.prioritiser.parsers; + +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +import java.io.IOException; +import java.nio.file.Files; +import java.nio.file.Path; +import java.util.Arrays; +import java.util.List; +import java.util.Map; +import java.util.function.Function; +import java.util.stream.IntStream; +import java.util.stream.Stream; + +import static java.util.stream.Collectors.toList; +import static java.util.stream.Collectors.toMap; + + +/** + * Parser for HGNC complete data set file. Requires a copy of the txt file from the + * 'Complete HGNC dataset'. + * + * @link http://www.genenames.org/cgi-bin/statistics + * + * @author Jules Jacobsen + */ +public class HgncParser { + + private static final Logger logger = LoggerFactory.getLogger(HgncParser.class); + + private final Path hgncTxt; + private final Map columnIndex; + + public HgncParser(Path hgncCompleteSetTxtPath) { + hgncTxt = hgncCompleteSetTxtPath; + columnIndex = makeColumnIndex(hgncTxt); + } + + public Stream parseGeneIdentifiers() { + return parseGeneIdentifiers(hgncTxt); + } + + private Map makeColumnIndex(Path hgncCompleteSetTxtPath) { + List columnHeaders = streamFile(hgncCompleteSetTxtPath) + .limit(1) + .flatMap(line -> Arrays.stream(line.split("\t"))) + .collect(toList()); + + return IntStream.range(0, columnHeaders.size()) + .boxed() + .collect(toMap(i -> columnHeaders.get(i), Function.identity())); + + } + + private Stream streamFile(Path path) { + try { + return Files.lines(path); + } catch (IOException e) { + logger.error("Unable to process file {}", path, e); + } + return Stream.empty(); + } + + private Stream parseGeneIdentifiers(Path hgncCompleteSetTxtPath) { + return streamFile(hgncCompleteSetTxtPath).skip(1).map(parseGeneIdentifier()); + } + + private Function parseGeneIdentifier() { + return line -> { +// System.out.println(line); + String[] tokens = line.split("\t"); + + if ("Entry Withdrawn".equals(getField(tokens, "status"))) { + return GeneIdentifier.builder() + .hgncId(getField(tokens, "hgnc_id")) + .geneSymbol(getField(tokens, "symbol")) +// .withdrawn(true) + .build(); + } + + return GeneIdentifier.builder() + .geneId(getField(tokens, "entrez_id")) + .geneSymbol(getField(tokens, "symbol")) + .hgncId(getField(tokens, "hgnc_id")) + .hgncSymbol(getField(tokens, "name")) + .entrezId(getField(tokens, "entrez_id")) + .ensemblId(getField(tokens, "ensembl_gene_id")) + .ucscId(getField(tokens, "ucsc_id")) + .build(); + }; + } + + private String getField(String[] tokens, String fieldName) { + int index = columnIndex.getOrDefault(fieldName, Integer.MAX_VALUE - 1); + if (tokens.length < index + 1) { + return GeneIdentifier.EMPTY_FIELD; + } + return tokens[index]; + } + +} diff --git a/exomiser-rest-prioritiser/src/main/resources/application.properties b/exomiser-rest-prioritiser/src/main/resources/application.properties new file mode 100644 index 000000000..0e6774215 --- /dev/null +++ b/exomiser-rest-prioritiser/src/main/resources/application.properties @@ -0,0 +1,31 @@ +# +# The Exomiser - A tool to annotate and prioritize variants +# +# Copyright (C) 2012 - 2016 Charite Universittsmedizin Berlin and Genome Research Ltd. +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see . +# +spring.application.name=exomiser-prioritiser-service + +server.context-path=/exomiser/api/prioritise +server.port=8085 +server.display-name=Exomiser Prioritiser Server + +#Absolute system path where the exomiser data is installed +exomiser.data-directory=${project.build.testOutputDirectory} + +#Actuator configuration +info.name=${server.display-name} +info.build.version=${project.version} +info.build.timestamp=${build.timestamp} \ No newline at end of file diff --git a/exomiser-rest-prioritiser/src/main/resources/banner.txt b/exomiser-rest-prioritiser/src/main/resources/banner.txt new file mode 100644 index 000000000..16b0d0910 --- /dev/null +++ b/exomiser-rest-prioritiser/src/main/resources/banner.txt @@ -0,0 +1,7 @@ + _____ _ _____ _ + |_ _| |__ ___ | ____|_ _____ _ __ ___ (_)___ ___ _ __ + | | | '_ \ / _ \ | _| \ \/ / _ \| '_ ` _ \| / __|/ _ \ '__| + | | | | | | __/ | |___ > < (_) | | | | | | \__ \ __/ | + |_| |_| |_|\___| |_____/_/\_\___/|_| |_| |_|_|___/\___|_| + + === Prioritiser Server === v${project.version} diff --git a/exomiser-rest-prioritiser/src/test/java/org/monarchinitiative/exomiser/rest/prioritiser/ExomiserPrioritiserServerTest.java b/exomiser-rest-prioritiser/src/test/java/org/monarchinitiative/exomiser/rest/prioritiser/ExomiserPrioritiserServerTest.java new file mode 100644 index 000000000..792da5891 --- /dev/null +++ b/exomiser-rest-prioritiser/src/test/java/org/monarchinitiative/exomiser/rest/prioritiser/ExomiserPrioritiserServerTest.java @@ -0,0 +1,39 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.prioritiser; + +import org.junit.Test; +import org.junit.runner.RunWith; +import org.monarchinitiative.exomiser.test.ExomiserStubDataConfig; +import org.springframework.boot.test.context.SpringBootTest; +import org.springframework.test.context.junit4.SpringRunner; + +/** + * @author Jules Jacobsen + */ +@RunWith(SpringRunner.class) +@SpringBootTest(classes = {ExomiserPrioritiserServer.class, ExomiserStubDataConfig.class}) +public class ExomiserPrioritiserServerTest { + + @Test + public void testContextLoads() { + } +} \ No newline at end of file diff --git a/exomiser-rest-prioritiser/src/test/java/org/monarchinitiative/exomiser/rest/prioritiser/parsers/HgncParserTest.java b/exomiser-rest-prioritiser/src/test/java/org/monarchinitiative/exomiser/rest/prioritiser/parsers/HgncParserTest.java new file mode 100644 index 000000000..a558ac32e --- /dev/null +++ b/exomiser-rest-prioritiser/src/test/java/org/monarchinitiative/exomiser/rest/prioritiser/parsers/HgncParserTest.java @@ -0,0 +1,100 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.rest.prioritiser.parsers; + +import org.junit.Test; +import org.monarchinitiative.exomiser.core.model.GeneIdentifier; + +import java.nio.file.Paths; +import java.util.List; + +import static java.util.stream.Collectors.toList; +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.MatcherAssert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class HgncParserTest { + + @Test + public void testParseGeneIdentifiers() { + HgncParser hgncParser = new HgncParser(Paths.get("src/test/resources/data/hgnc_complete_set.txt")); + List geneIdentifiers = hgncParser.parseGeneIdentifiers().collect(toList()); + assertThat(geneIdentifiers.size(), equalTo(41054)); + + GeneIdentifier fgfr2Identifier = geneIdentifiers.stream() + .filter(geneIdentifier -> geneIdentifier.getGeneSymbol().equals("FGFR2")) + .findFirst() + .get(); + System.out.println(fgfr2Identifier); + + GeneIdentifier expectedFgfr2Identifier = GeneIdentifier.builder() + .geneId("2263") + .geneSymbol("FGFR2") + .hgncId("HGNC:3689") + .hgncSymbol("fibroblast growth factor receptor 2") + .ensemblId("ENSG00000066468") + .entrezId("2263") + .ucscId("uc057wle.1") + .build(); + + assertThat(fgfr2Identifier, equalTo(expectedFgfr2Identifier)); + + GeneIdentifier withdrawnIdentifier = geneIdentifiers.stream() + .filter(geneIdentifier -> geneIdentifier.getHgncId().equals("HGNC:1")) + .findFirst() + .get(); + System.out.println(withdrawnIdentifier); + +// GeneIdentifier expectedWithdrawnIdentifier = GeneIdentifier.builder() +// .hgncId("HGNC:1") +// .geneSymbol("A12M1") +// .withdrawn(true) +// .build(); +// +// assertThat(withdrawnIdentifier.isWithdrawn(), is(true)); +// assertThat(withdrawnIdentifier, equalTo(expectedWithdrawnIdentifier)); +// +// System.out.println("getLocusGroups:"); +// geneIdentifiers.stream() +// .collect(groupingBy(GeneIdentifier::getLocusGroup, counting())) +// .entrySet() +// .forEach(System.out::println); + + System.out.println(); +// geneIdentifiers.stream() +// .filter(geneIdentifier -> geneIdentifier.getLocusGroup().isEmpty()) +// .forEach(System.out::println); +// System.out.println(); + +// System.out.println("getLocusTypes:"); +// geneIdentifiers.stream().map(GeneIdentifier::getLocusType).distinct().forEach(System.out::println); +// +// geneIdentifiers.stream() +// .filter(geneIdentifier -> geneIdentifier.getLocusGroup().equals("phenotype")) +// .forEach(System.out::println); +// System.out.println(); + + } + + +} \ No newline at end of file diff --git a/exomiser-rest-prioritiser/src/test/resources/application.properties b/exomiser-rest-prioritiser/src/test/resources/application.properties new file mode 100644 index 000000000..b12344241 --- /dev/null +++ b/exomiser-rest-prioritiser/src/test/resources/application.properties @@ -0,0 +1,26 @@ +# +# The Exomiser - A tool to annotate and prioritize variants +# +# Copyright (C) 2012 - 2016 Charite Universittsmedizin Berlin and Genome Research Ltd. +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see . +# + +# EMBEDDED SERVER CONFIGURATION +server.context-path=/exomiser/api/prioritise +server.port= +server.display-name=Exomiser Prioritiser Server + +exomiser.data-directory=${project.build.testOutputDirectory}/data +exomiser.h2.url=jdbc:h2:mem:exomiser diff --git a/exomiser-rest-prioritiser/src/test/resources/data/hgnc_complete_set.txt b/exomiser-rest-prioritiser/src/test/resources/data/hgnc_complete_set.txt new file mode 100644 index 000000000..6c8546998 --- /dev/null +++ b/exomiser-rest-prioritiser/src/test/resources/data/hgnc_complete_set.txt @@ -0,0 +1,41055 @@ +hgnc_id symbol name locus_group locus_type status location location_sortable alias_symbol alias_name prev_symbol prev_name gene_family gene_family_id date_approved_reserved date_symbol_changed date_name_changed date_modified entrez_id ensembl_gene_id vega_id ucsc_id ena refseq_accession ccds_id uniprot_ids pubmed_id mgd_id rgd_id lsdb cosmic omim_id mirbase homeodb snornabase bioparadigms_slc orphanet pseudogene.org horde_id merops imgt iuphar kznf_gene_catalog mamit-trnadb cd lncrnadb enzyme_id intermediate_filament_db +HGNC:5 A1BG alpha-1-B glycoprotein protein-coding gene gene with protein product Approved 19q13.43 19q13.43 Immunoglobulin like domain containing 594 1989-06-30 2015-07-13 1 ENSG00000121410 OTTHUMG00000183507 uc002qsd.5 NM_130786 CCDS12976 P04217 2591067 MGI:2152878 RGD:69417 A1BG 138670 I43.950 +HGNC:37133 A1BG-AS1 A1BG antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.43 19q13.43 FLJ23569 "NCRNA00181|A1BGAS|A1BG-AS" "non-protein coding RNA 181|A1BG antisense RNA (non-protein coding)|A1BG antisense RNA 1 (non-protein coding)" 2009-07-20 2010-11-25 2012-08-15 2013-06-27 503538 ENSG00000268895 OTTHUMG00000183508 uc002qse.3 BC040926 NR_015380 +HGNC:24086 A1CF APOBEC1 complementation factor protein-coding gene gene with protein product Approved 10q11.23 10q11.23 "ACF|ASP|ACF64|ACF65|APOBEC1CF" RNA binding motif containing 725 2007-11-23 2016-10-05 29974 ENSG00000148584 OTTHUMG00000018240 uc057tgv.1 AF271790 NM_014576 "CCDS7241|CCDS7242|CCDS7243|CCDS73133" Q9NQ94 "11815617|11072063" MGI:1917115 RGD:619834 A1CF +HGNC:7 A2M alpha-2-macroglobulin protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "FWP007|S863-7|CPAMD5" C3 and PZP like, alpha-2-macroglobulin domain containing 1234 1986-01-01 2015-08-24 2 ENSG00000175899 OTTHUMG00000150267 uc001qvk.2 "BX647329|X68728|M11313" NM_000014 CCDS44827 P01023 "2408344|9697696" MGI:2449119 RGD:2004 A2M 103950 I39.001 +HGNC:27057 A2M-AS1 A2M antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 "A2M antisense RNA 1 (non-protein coding)|A2M antisense RNA 1" 2012-06-23 2014-08-08 2014-08-08 144571 ENSG00000245105 OTTHUMG00000168289 uc009zgj.2 NR_026971 +HGNC:23336 A2ML1 alpha-2-macroglobulin like 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 FLJ25179 CPAMD9 C3 and PZP-like, alpha-2-macroglobulin domain containing 9 C3 and PZP like, alpha-2-macroglobulin domain containing 1234 2005-07-20 2005-09-01 2016-03-07 2016-10-05 144568 ENSG00000166535 OTTHUMG00000128499 uc001quz.6 AK057908 NM_144670 "CCDS8596|CCDS73439" A8K2U0 16298998 RGD:1565709 A2ML1 610627 410627 I39.007 +HGNC:41022 A2ML1-AS1 A2ML1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 A2ML1 antisense RNA 1 (non-protein coding) 2011-05-05 2012-08-15 2014-11-19 100874108 ENSG00000256661 OTTHUMG00000168273 uc058kxy.1 +HGNC:41523 A2ML1-AS2 A2ML1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 A2ML1 antisense RNA 2 (non-protein coding) 2011-05-05 2012-08-15 2014-11-19 106478979 ENSG00000256904 OTTHUMG00000168274 uc058kyb.1 +HGNC:8 A2MP1 alpha-2-macroglobulin pseudogene 1 pseudogene pseudogene Approved 12p13.31 12p13.31 A2MP alpha-2-macroglobulin pseudogene 1991-09-12 2010-02-24 2010-02-24 2016-08-22 3 ENSG00000256069 OTTHUMG00000168334 M24415 NG_001067 2478422 PGOHUM00000291221 +HGNC:30005 A3GALT2 alpha 1,3-galactosyltransferase 2 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "IGBS3S|IGB3S" "iGb3 synthase|isoglobotriaosylceramide synthase" A3GALT2P alpha 1,3-galactosyltransferase 2, pseudogene Glycosyltransferase family 6 429 2005-05-06 2013-03-11 2013-03-11 2016-01-22 127550 ENSG00000184389 OTTHUMG00000004125 uc031plq.1 NM_001080438 CCDS60080 U3KPV4 "10854427|18630988" MGI:2685279 RGD:727913 +HGNC:18149 A4GALT alpha 1,4-galactosyltransferase protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "A14GALT|Gb3S|P(k)" "Gb3 synthase|CD77 synthase|globotriaosylceramide synthase|lactosylceramide 4-alpha-galactosyltransferase" alpha 1,4-galactosyltransferase (globotriaosylceramide synthase, P blood group) Alpha 1,4-glycosyltransferases 442 2002-02-06 2008-07-31 2016-10-12 53947 ENSG00000128274 OTTHUMG00000150744 uc062ewl.1 NM_017436 CCDS14041 Q9NPC4 10854428 MGI:3512453 RGD:621583 LRG_795|http://www.lrg-sequence.org/LRG/LRG_795 A4GALT 607922 2.4.1.228 +HGNC:17968 A4GNT alpha-1,4-N-acetylglucosaminyltransferase protein-coding gene gene with protein product Approved 3q22.3 03q22.3 alpha4GnT Alpha 1,4-glycosyltransferases 442 2004-07-12 2016-10-05 51146 ENSG00000118017 OTTHUMG00000159820 uc003ers.2 AF141315 NM_016161 CCDS3097 Q9UNA3 10430883 MGI:2143261 RGD:1590210 A4GNT 616709 +HGNC:1 A12M1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:2 A12M2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3 A12M3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4 A12M4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13666 AAAS aladin WD repeat nucleoporin protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "aladin|Allgrove, triple-A|adracalin" "achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A)|achalasia, adrenocortical insufficiency, alacrimia" "WD repeat domain containing|Nucleoporins" "362|1051" 2000-11-08 2015-12-14 2016-10-05 8086 ENSG00000094914 OTTHUMG00000169729 uc001scr.5 AJ289841 XR_001748875 "CCDS8856|CCDS53797" Q9NRG9 11062474 MGI:2443767 RGD:1308701 AAAS 605378 117613 +HGNC:12 AABT entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:21298 AACS acetoacetyl-CoA synthetase protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "FLJ12389|SUR-5|ACSF1" acyl-CoA synthetase family member 1 Acyl-CoA synthetase family 40 2003-06-02 2015-08-24 65985 ENSG00000081760 OTTHUMG00000168550 uc001uhc.4 AK022451 NM_023928 CCDS9263 Q86V21 "12623130|17762044" MGI:1926144 RGD:708522 AACS 614364 6.2.1.16 +HGNC:18226 AACSP1 acetoacetyl-CoA synthetase pseudogene 1 pseudogene pseudogene Approved 5q35.3 05q35.3 AACSL acetoacetyl-CoA synthetase-like 2004-06-04 2010-09-29 2010-09-29 2016-10-05 729522 ENSG00000250420 OTTHUMG00000163584 NR_024035 +HGNC:17 AADAC arylacetamide deacetylase protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "DAC|CES5A1" arylacetamide deacetylase (esterase) "Lipases|Arylacetamide deacetylase family" "464|465" 1996-12-27 2012-07-13 2015-08-24 13 ENSG00000114771 OTTHUMG00000159876 uc003eze.4 L32179 NM_001086 CCDS33877 P22760 8063807 MGI:1915008 RGD:631440 AADAC 600338 S09.991 3.1.1.3 +HGNC:24427 AADACL2 arylacetamide deacetylase like 2 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 MGC72001 Arylacetamide deacetylase family 465 2005-03-18 2016-05-26 2016-05-26 344752 ENSG00000197953 OTTHUMG00000155914 uc003ezc.4 BC065724 NM_207365 CCDS3161 Q6P093 25715734 MGI:3646333 RGD:1563197 AADACL2 +HGNC:50301 AADACL2-AS1 AADACL2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 2014-04-07 2014-04-07 101928142 ENSG00000242908 OTTHUMG00000159877 NR_110203 +HGNC:32037 AADACL3 arylacetamide deacetylase like 3 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 OTTHUMG00000001887 Arylacetamide deacetylase family 465 2006-06-30 2016-05-26 2016-05-26 126767 ENSG00000188984 OTTHUMG00000001887 uc057ckc.1 NM_001103170 CCDS41253 Q5VUY0 MGI:2685281 RGD:1563257 AADACL3 +HGNC:32038 AADACL4 arylacetamide deacetylase like 4 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 OTTHUMG00000001889 Arylacetamide deacetylase family 465 2006-06-30 2016-05-26 2016-05-26 343066 ENSG00000204518 OTTHUMG00000001889 uc001auf.3 NM_001013630 CCDS30590 Q5VUY2 MGI:3650257 RGD:1565761 AADACL4 +HGNC:50305 AADACP1 arylacetamide deacetylase pseudogene 1 pseudogene pseudogene Approved 3q25.1 03q25.1 2014-04-07 2016-08-22 201651 ENSG00000240602 OTTHUMG00000159879 NR_026915 PGOHUM00000299631 +HGNC:17929 AADAT aminoadipate aminotransferase protein-coding gene gene with protein product Approved 4q33 04q33 "KATII|KAT2|KYAT2" "kynurenine aminotransferase II|L kynurenine/alpha aminoadipate aminotransferase" 2002-01-16 2016-04-26 51166 ENSG00000109576 OTTHUMG00000160912 uc032udw.1 AF097994 NM_016228 "CCDS3814|CCDS75209" Q8N5Z0 "12126930|10441733|18056995" MGI:1345167 RGD:2948 AADAT 611754 "2.6.1.39|2.6.1.7" +HGNC:16881 AAED1 AhpC/TSA antioxidant enzyme domain containing 1 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 C9orf21 chromosome 9 open reading frame 21 2002-04-29 2012-03-06 2012-03-06 2016-10-05 195827 ENSG00000158122 OTTHUMG00000020299 uc004awm.4 BK000255 NM_153698 CCDS35073 Q7RTV5 MGI:1913379 RGD:1589650 +HGNC:25662 AAGAB alpha- and gamma-adaptin binding protein protein-coding gene gene with protein product Approved 15q23 15q23 "FLJ11506|p34" 2009-07-20 2009-07-20 2015-01-28 79719 ENSG00000103591 OTTHUMG00000172246 uc002aqk.6 AL136715 NM_024666 "CCDS42050|CCDS61679" Q6PD74 "11230166|10477754" MGI:1914189 RGD:621601 AAGAB 614888 317366 +HGNC:19679 AAK1 AP2 associated kinase 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "KIAA1048|DKFZp686K16132" 2003-07-21 2015-08-24 22848 ENSG00000115977 OTTHUMG00000129648 uc002sfp.3 AB028971 NM_014911 CCDS1893 Q2M2I8 "11877461|12471243" MGI:1098687 RGD:1305520 AAK1 616405 objectId:1921 +HGNC:30205 AAMDC adipogenesis associated Mth938 domain containing protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "PTD015|FLJ21035|CK067" C11orf67 chromosome 11 open reading frame 67 2006-03-27 2012-10-08 2016-06-21 2016-06-21 28971 ENSG00000087884 OTTHUMG00000166651 uc058fuq.1 BC016854 NM_024684 "CCDS8254|CCDS81604|CCDS81605" Q9H7C9 22279136 MGI:1913523 RGD:1561459 +HGNC:18 AAMP angio associated migratory cell protein protein-coding gene gene with protein product Approved 2q35 02q35 WD repeat domain containing 362 1996-11-13 2015-12-08 2016-10-04 14 ENSG00000127837 OTTHUMG00000155202 uc002vhk.4 AB209790 NM_001087 "CCDS33378|CCDS77530" Q13685 7743515 MGI:107809 RGD:1306281 AAMP 603488 +HGNC:19 AANAT aralkylamine N-acetyltransferase protein-coding gene gene with protein product Approved 17q25.1 17q25.1 SNAT serotonin N-acetyltransferase arylalkylamine N-acetyltransferase GCN5 related N-acetyltransferases 1134 1995-12-13 2010-05-07 2014-11-19 15 ENSG00000129673 OTTHUMG00000180179 uc002jro.4 U40347 NM_001088 "CCDS11745|CCDS54169" Q16613 8661026 MGI:1328365 RGD:2006 AANAT 600950 2.3.1.87 +HGNC:15886 AAR2 AAR2 splicing factor homolog protein-coding gene gene with protein product Approved 20q11.23 20q11.23 bA234K24.2 C20orf4 "chromosome 20 open reading frame 4|AAR2 splicing factor homolog (S. cerevisiae)" 2001-06-21 2012-07-20 2015-07-02 2016-04-05 25980 ENSG00000131043 OTTHUMG00000032380 uc002xfc.4 NM_015511 CCDS13273 Q9Y312 26527271 MGI:1915545 RGD:1311066 +HGNC:33842 AARD alanine and arginine rich domain containing protein protein-coding gene gene with protein product Approved 8q24.11 08q24.11 LOC441376 Alanine and arginine-rich domain-containing protein C8orf85 chromosome 8 open reading frame 85 2009-01-23 2012-04-19 2012-04-19 2012-04-19 441376 ENSG00000205002 OTTHUMG00000164961 uc003yof.4 "AB181519|BC140924" NM_001025357 CCDS34935 Q4LEZ3 MGI:2181621 RGD:631378 +HGNC:20 AARS alanyl-tRNA synthetase protein-coding gene gene with protein product Approved 16q22.1 16q22.1 CMT2N alanine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class II 132 1995-07-11 2016-10-12 16 ENSG00000090861 OTTHUMG00000177042 uc002eyn.2 D32050 NM_001605 CCDS32474 P49588 8595897 MGI:2384560 RGD:1304832 LRG_359|http://www.lrg-sequence.org/LRG/LRG_359 AARS 601065 232194 6.1.1.7 +HGNC:21022 AARS2 alanyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "KIAA1270|bA444E17.1" alanine tRNA ligase 2, mitochondrial AARSL "alanyl-tRNA synthetase like|alanyl-tRNA synthetase 2, mitochondrial (putative)" Aminoacyl tRNA synthetases, Class II 132 2003-05-08 2007-02-23 2012-10-26 2015-08-26 57505 ENSG00000124608 OTTHUMG00000014766 uc010jza.2 AB033096 NM_020745 CCDS34464 Q5JTZ9 "15779907|21549344" MGI:2681839 RGD:1310617 AARS2 612035 269639 6.1.1.7 +HGNC:28417 AARSD1 alanyl-tRNA synthetase domain containing 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 MGC2744 2005-11-15 2015-08-26 80755 ENSG00000266967 OTTHUMG00000153515 uc031raq.2 BC004172 NM_001261434 "CCDS11447|CCDS45691|CCDS58552" Q9BTE6 MGI:1916934 AARSD1 613212 +HGNC:49894 AARSP1 alanyl-tRNA synthetase pseudogene 1 pseudogene pseudogene Approved 4q28.3 04q28.3 2014-03-18 2014-03-18 106480683 ENSG00000249038 OTTHUMG00000161188 NG_043271 PGOHUM00000246081 +HGNC:23993 AASDH aminoadipate-semialdehyde dehydrogenase protein-coding gene gene with protein product Approved 4q12 04q12 "NRPS998|LYS2|ACSF4" acyl-CoA synthetase family member 4 Acyl-CoA synthetase family 40 2007-10-17 2015-08-26 132949 ENSG00000157426 OTTHUMG00000128841 uc003hbn.5 AF516672 NM_181806 "CCDS3504|CCDS68705|CCDS68706|CCDS75126|CCDS75127" Q4L235 "15865210|12712191|17762044" MGI:2442517 RGD:1311135 AASDH 614365 1.2.1.31 +HGNC:14235 AASDHPPT aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "LYS5|CGI-80|AASD-PPT|ACPS" "holo ACP synthase|holo-[acyl-carrier-protein] synthase" 2000-12-21 2016-10-05 60496 ENSG00000149313 OTTHUMG00000166253 uc001pjc.2 AF302110 NM_015423 CCDS31664 Q9NRN7 "12815048|11286508|18022563" MGI:1914868 RGD:1311360 AASDHPPT 607756 2.7.8.7 +HGNC:17366 AASS aminoadipate-semialdehyde synthase protein-coding gene gene with protein product Approved 7q31.32 07q31.32 "LORSDH|LKRSDH" 2002-01-09 2016-10-05 10157 ENSG00000008311 OTTHUMG00000157058 uc003vkb.4 AF229180 NM_005763 CCDS5783 Q9UDR5 10775527 MGI:1353573 RGD:1310811 AASS 605113 123389 +HGNC:51526 AATBC apoptosis associated transcript in bladder cancer non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 apoptosis-associated transcript in bladder cancer Long non-coding RNAs 788 2015-02-13 2015-02-13 284837 ENSG00000215458 OTTHUMG00000086882 NR_026961 25473900 +HGNC:19235 AATF apoptosis antagonizing transcription factor protein-coding gene gene with protein product Approved 17q12 17q12 "DED|CHE-1|CHE1|BFR2" 2002-09-13 2015-01-29 26574 ENSG00000275700 OTTHUMG00000188458 uc002hni.3 AF083208 NM_012138 CCDS32632 Q9NY61 "11027528|10783144" MGI:1929608 RGD:620685 AATF 608463 +HGNC:21 AATK apoptosis associated tyrosine kinase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "AATYK|KIAA0641|LMTK1|LMR1|AATYK1|PPP1R77" "lemur tyrosine kinase 1|protein phosphatase 1, regulatory subunit 77" "Receptor Tyrosine Kinases|Protein phosphatase 1 regulatory subunits" "321|694" 1999-09-16 2016-06-09 2016-06-29 9625 ENSG00000181409 OTTHUMG00000132717 uc010dia.4 AB014541 NM_004920 "CCDS45807|CCDS58607" Q6ZMQ8 "9734811|10083745|22573681" MGI:1197518 RGD:1590980 AATK 605276 objectId:1922 +HGNC:40053 AATK-AS1 AATK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 AATK antisense RNA 1 (non-protein coding) 2011-05-04 2012-08-15 2014-11-18 388428 ENSG00000225180 OTTHUMG00000150182 uc010wul.1 NR_027255 +HGNC:22 AAVS1 adeno-associated virus integration site 1 other virus integration site Approved 19q13 19q13 AAV 1990-09-10 2010-06-16 17 S51329 1334463 102699 +HGNC:49667 ABALON apoptotic BCL2L1-antisense long non-coding RNA non-coding RNA RNA, long non-coding Approved 20q11.21 20q11.21 INXS "apoptotic BCL-X-associated long ncRNA|intronic BCL-XS-inducing lncRNA" Long non-coding RNAs 788 2014-03-13 2015-12-04 103021294 ENSG00000281376 OTTHUMG00000189574 KC505631 NR_131907 24992962 616018 +HGNC:23 ABAT 4-aminobutyrate aminotransferase protein-coding gene gene with protein product Approved 16p13.2 16p13.2 GABAT 4-aminobutyrate transaminase 1996-03-13 2015-07-17 18 ENSG00000183044 OTTHUMG00000048201 uc002czc.5 L32961 NM_020686 CCDS10534 P80404 7721088 MGI:2443582 RGD:620948 ABAT 137150 117617 objectId:2464 2.6.1.19 +HGNC:29 ABCA1 ATP binding cassette subfamily A member 1 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 TGD Tangier disease "ABC1|HDLDT1" ATP-binding cassette, sub-family A (ABC1), member 1 ATP binding cassette subfamily A 805 2005-03-17 2015-11-13 2016-10-05 19 ENSG00000165029 OTTHUMG00000020417 uc004bcl.4 AJ012376 NM_005502 CCDS6762 O95477 "8088782|10431236|10431237|10431238" MGI:99607 RGD:631344 ABCA1 600046 159528 objectId:756 +HGNC:32 ABCA2 ATP binding cassette subfamily A member 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 ABC2 ATP-binding cassette, sub-family A (ABC1), member 2 ATP binding cassette subfamily A 805 1994-03-16 2015-11-13 2016-10-05 20 ENSG00000107331 OTTHUMG00000020958 uc064xhf.1 U18235 NM_001606 CCDS43909 Q9BZC7 8088782 MGI:99606 RGD:620238 ABCA2 600047 objectId:757 +HGNC:33 ABCA3 ATP binding cassette subfamily A member 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "ABC-C|EST111653|LBM180" ABC3 ATP-binding cassette, sub-family A (ABC1), member 3 ATP binding cassette subfamily A 805 1996-08-08 2015-11-13 2015-11-13 21 ENSG00000167972 OTTHUMG00000128845 uc002cpy.2 U78735 NM_001089 CCDS10466 Q99758 8706931 MGI:1351617 RGD:1307174 ABCA3 601615 140560 objectId:758 +HGNC:34 ABCA4 ATP binding cassette subfamily A member 4 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "FFM|ARMD2|CORD3" Stargardt disease "STGD1|ABCR|RP19|STGD" "ATP-binding cassette transporter, retinal-specific|ATP-binding cassette, sub-family A (ABC1), member 4" ATP binding cassette subfamily A 805 1994-07-14 2015-11-13 2016-10-05 24 ENSG00000198691 OTTHUMG00000010622 uc001dqh.4 U88667 NM_000350 CCDS747 P78363 9490294 MGI:109424 RGD:1309445 Mutations of the ATP-binding Cassette Transporter Retina|http://www.retina-international.org/files/sci-news/abcrmut.htm ABCA4 601691 117623 objectId:759 +HGNC:35 ABCA5 ATP binding cassette subfamily A member 5 protein-coding gene gene with protein product Approved 17q24.3 17q24.3 EST90625 ATP-binding cassette, sub-family A (ABC1), member 5 ATP binding cassette subfamily A 805 1999-10-26 2015-11-13 2015-11-13 23461 ENSG00000154265 OTTHUMG00000180303 uc002jig.3 U66672 NM_018672 CCDS11685 Q8WWZ7 8894702 MGI:2386607 RGD:628661 ABCA5 612503 404800 objectId:760 +HGNC:36 ABCA6 ATP binding cassette subfamily A member 6 protein-coding gene gene with protein product Approved 17q24.2-q24.3 17q24.2-q24.3 EST155051 ATP-binding cassette, sub-family A (ABC1), member 6 ATP binding cassette subfamily A 805 1999-10-26 2015-11-13 2016-10-11 23460 ENSG00000154262 OTTHUMG00000180258 uc002jhw.2 U66680 NM_080284 CCDS11683 Q8N139 8894702 MGI:1923434 RGD:1308998 ABCA6 612504 objectId:761 +HGNC:37 ABCA7 ATP binding cassette subfamily A member 7 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ABCX ATP-binding cassette, sub-family A (ABC1), member 7 ATP binding cassette subfamily A 805 1999-06-11 2015-11-13 2015-11-13 10347 ENSG00000064687 OTTHUMG00000167547 uc002lqw.5 AF328787 NM_019112 CCDS12055 Q8IZY2 MGI:1351646 RGD:1303134 ABCA7 605414 objectId:762 +HGNC:38 ABCA8 ATP binding cassette subfamily A member 8 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 KIAA0822 ATP-binding cassette, sub-family A (ABC1), member 8 ATP binding cassette subfamily A 805 1999-06-11 2015-11-13 2016-10-04 10351 ENSG00000141338 OTTHUMG00000180192 uc002jhq.5 AB020629 NM_007168 "CCDS11680|CCDS74138|CCDS74139" O94911 "MGI:1351668|MGI:2386846" RGD:1307069 ABCA8 612505 objectId:763 +HGNC:39 ABCA9 ATP binding cassette subfamily A member 9 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 EST640918 ATP-binding cassette, sub-family A (ABC1), member 9 ATP binding cassette subfamily A 805 1999-06-11 2015-11-13 2016-10-05 10350 ENSG00000154258 OTTHUMG00000140371 uc002jhu.4 AF423307 NM_172386 CCDS11681 Q8IUA7 MGI:2386796 RGD:1305931 ABCA9 612507 objectId:764 +HGNC:39983 ABCA9-AS1 ABCA9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q24.2 17q24.2 ABCA9 antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 104355297 ENSG00000231749 OTTHUMG00000140370 uc060jgk.1 NR_126414 +HGNC:30 ABCA10 ATP binding cassette subfamily A member 10 protein-coding gene gene with protein product Approved 17q24.3 17q24.3 EST698739 ATP-binding cassette, sub-family A (ABC1), member 10 ATP binding cassette subfamily A 805 1999-06-11 2015-11-13 2016-10-05 10349 ENSG00000154263 OTTHUMG00000164716 uc010dfa.2 AY247065 NM_080282 CCDS11684 Q8WWZ4 "12821155|11435397" ABCA10 612508 objectId:765 +HGNC:31 ABCA11P ATP binding cassette subfamily A member 11, pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 "EST1133530|FLJ14297" ABCA11 ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene ATP binding cassette subfamily A 805 1999-06-11 2008-09-09 2015-11-13 2015-11-13 79963 ENSG00000251595 OTTHUMG00000159884 AK024359 NR_002451.2 Q4W5N1 PGOHUM00000245425 +HGNC:14637 ABCA12 ATP binding cassette subfamily A member 12 protein-coding gene gene with protein product Approved 2q35 02q35 "DKFZP434G232|LI2" ICR2B "ichthyosis congenita II, lamellar ichthyosis B|ATP-binding cassette, sub-family A (ABC1), member 12" ATP binding cassette subfamily A 805 2001-08-16 2015-11-13 2016-10-05 26154 ENSG00000144452 OTTHUMG00000154801 uc002vew.3 AF418105 NM_173076 "CCDS33372|CCDS33373" Q86UK0 "11435397|12915478|8845852|10094194" MGI:2676312 RGD:1304586 ABCA12 607800 117620 objectId:766 +HGNC:14638 ABCA13 ATP binding cassette subfamily A member 13 protein-coding gene gene with protein product Approved 7p12.3 07p12.3 "FLJ33876|FLJ33951" ATP-binding cassette, sub-family A (ABC1), member 13 ATP binding cassette subfamily A 805 2004-12-21 2015-11-13 2015-11-13 154664 ENSG00000179869 OTTHUMG00000155840 uc003toq.2 AY204751 NM_152701 CCDS47584 Q86UQ4 12697998 MGI:2388707 RGD:1305895 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=ABCA13 ABCA13 607807 objectId:767 +HGNC:32972 ABCA17P ATP binding cassette subfamily A member 17, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 ATP-binding cassette, sub-family A (ABC1), member 17, pseudogene ATP binding cassette subfamily A 805 2006-09-19 2015-11-13 2015-11-13 650655 ENSG00000238098 OTTHUMG00000154348 DQ266102 NR_003574 16968533 MGI:3625331 PGOHUM00000250669 +HGNC:40 ABCB1 ATP binding cassette subfamily B member 1 protein-coding gene gene with protein product Approved 7q21.12 07q21.12 "P-gp|CD243|GP170|ABC20" multidrug resistance protein 1 "PGY1|MDR1|CLCS" "colchicin sensitivity|ATP-binding cassette, sub-family B (MDR/TAP), member 1" "CD molecules|ATP binding cassette subfamily B" "471|806" 1986-01-01 2015-11-13 2015-11-13 5243 ENSG00000085563 OTTHUMG00000023393 uc003uiz.3 M14758 NM_000927 CCDS5608 P08183 3027054 MGI:97570 RGD:619951 ABCB1 171050 318801 objectId:768 CD243 +HGNC:45 ABCB4 ATP binding cassette subfamily B member 4 protein-coding gene gene with protein product Approved 7q21.12 07q21.12 "MDR2|PFIC-3|GBD1" "PGY3|MDR3" ATP-binding cassette, sub-family B (MDR/TAP), member 4 ATP binding cassette subfamily B 806 1988-05-11 2015-11-13 2016-10-05 5244 ENSG00000005471 OTTHUMG00000023396 uc003uix.1 M23234 NM_000443 "CCDS5605|CCDS5606|CCDS5607" P21439 "2892668|11313316" MGI:97569 RGD:620248 ABCB4 171060 117639 objectId:771 +HGNC:46 ABCB5 ATP binding cassette subfamily B member 5 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "EST422562|ABCB5beta|ABCB5alpha" "P-glycoprotein ABCB5|ATP-binding cassette protein" ATP-binding cassette, sub-family B (MDR/TAP), member 5 ATP binding cassette subfamily B 806 1999-10-26 2015-11-13 2016-10-05 340273 ENSG00000004846 OTTHUMG00000094789 uc010kuh.4 U66692 NM_178559 "CCDS5371|CCDS55090|CCDS55091|CCDS55092" Q2M3G0 "8894702|12960149" MGI:1924956 RGD:1566342 ABCB5 611785 objectId:772 +HGNC:47 ABCB6 ATP binding cassette subfamily B member 6 (Langereis blood group) protein-coding gene gene with protein product Approved 2q35 02q35 "EST45597|umat|MTABC3" ATP-binding cassette half-transporter "ATP-binding cassette, sub-family B (MDR/TAP), member 6|ATP-binding cassette, sub-family B (MDR/TAP), member 6 (Langereis blood group)" "Blood group antigens|ATP binding cassette subfamily B" "454|806" 1999-10-26 2015-11-13 2016-10-12 10058 ENSG00000115657 OTTHUMG00000133131 uc002vkc.3 AF070598 NM_005689 CCDS2436 Q9NP58 "8894702|9110174" MGI:1921354 RGD:71077 LRG_824|http://www.lrg-sequence.org/LRG/LRG_824 ABCB6 605452 291794 objectId:773 +HGNC:48 ABCB7 ATP binding cassette subfamily B member 7 protein-coding gene gene with protein product Approved Xq13.3 Xq13.3 "EST140535|Atm1p|ASAT" ABC7 ATP-binding cassette, sub-family B (MDR/TAP), member 7 ATP binding cassette subfamily B 806 1997-09-12 2015-11-13 2015-11-13 22 ENSG00000131269 OTTHUMG00000021862 uc004ebz.5 AF038950 NM_004299 "CCDS14428|CCDS65290|CCDS65291|CCDS75994" O75027 9143506 MGI:109533 RGD:1303086 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ABCB7 ABCB7 300135 117646 objectId:774 +HGNC:49 ABCB8 ATP binding cassette subfamily B member 8 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "EST328128|M-ABC1|MABC1" mitochondrial ABC protein ATP-binding cassette, sub-family B (MDR/TAP), member 8 ATP binding cassette subfamily B 806 1999-10-26 2015-11-13 2015-11-13 11194 ENSG00000197150 OTTHUMG00000158686 uc003wik.6 AF047690 NM_007188 "CCDS5913|CCDS64798|CCDS64799|CCDS64800" Q9NUT2 8894702 MGI:1351667 RGD:1307655 ABCB8 605464 objectId:775 +HGNC:50 ABCB9 ATP binding cassette subfamily B member 9 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 EST122234 ATP-binding cassette, sub-family B (MDR/TAP), member 9 ATP binding cassette subfamily B 806 1999-10-26 2015-11-13 2016-10-04 23457 ENSG00000150967 OTTHUMG00000168769 uc058upb.1 U66676 NM_019624 "CCDS9241|CCDS58286|CCDS58287|CCDS58288" Q9NP78 8894702 MGI:1861729 RGD:620254 ABCB9 605453 objectId:776 +HGNC:41 ABCB10 ATP binding cassette subfamily B member 10 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "EST20237|M-ABC2|MTABC2" "ATP-binding cassette sub-family B member 10, mitochondrial|ATP-binding cassette transporter 10|ABC transporter 10 protein|mitochondrial ATP-binding cassette 2" ATP-binding cassette, sub-family B (MDR/TAP), member 10 ATP binding cassette subfamily B 806 1999-10-26 2015-11-13 2016-10-05 23456 ENSG00000135776 OTTHUMG00000039471 uc001htp.4 U18237 NM_012089 CCDS1580 Q9NRK6 7766993 MGI:1860508 RGD:1311222 ABCB10 605454 objectId:777 +HGNC:14114 ABCB10P1 ATP binding cassette subfamily B member 10 pseudogene 1 pseudogene pseudogene Approved 15q11.2 15q11.2 "M-ABC2|MABC2" "ABCB10P|ABCB10P2" "ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene|ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 2|ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 1" 2001-07-13 2008-09-09 2015-11-13 2015-11-13 56476 ENSG00000274099 OTTHUMG00000188344 AF218417 NG_005041 "7766993|10922475" PGOHUM00000293137 +HGNC:31129 ABCB10P3 ATP binding cassette subfamily B member 10 pseudogene 3 pseudogene pseudogene Approved 15q13.1 15q13.1 ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 3 2010-06-17 2015-11-13 2015-11-13 728248 ENSG00000261524 OTTHUMG00000175874 NG_022122 PGOHUM00000247024 +HGNC:31130 ABCB10P4 ATP binding cassette subfamily B member 10 pseudogene 4 pseudogene pseudogene Approved 15q13.1 15q13.1 ATP-binding cassette, sub-family B (MDR/TAP), member 10 pseudogene 4 2010-06-17 2015-11-13 2015-11-13 100132289 ENSG00000260053 OTTHUMG00000175877 NG_022102 PGOHUM00000246689 +HGNC:42 ABCB11 ATP binding cassette subfamily B member 11 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "ABC16|SPGP|PFIC-2|PGY4" ABC member 16, MDR/TAP subfamily "BSEP|PFIC2" "progressive familial intrahepatic cholestasis 2|bile salt export pump|ATP-binding cassette, sub-family B (MDR/TAP), member 11" ATP binding cassette subfamily B 806 1998-09-25 2015-11-13 2016-10-05 8647 ENSG00000073734 OTTHUMG00000154039 uc002ueo.2 AF091582 NM_003742 CCDS46444 O95342 9806540 MGI:1351619 RGD:619930 CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=ABCB11 ABCB11 603201 117631 objectId:778 +HGNC:51 ABCC1 ATP binding cassette subfamily C member 1 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 GS-X "MRP|MRP1" "multidrug resistance associated protein 1|ATP-binding cassette, sub-family C (CFTR/MRP), member 1" ATP binding cassette subfamily C 807 1993-06-29 2015-11-13 2016-10-05 4363 ENSG00000103222 OTTHUMG00000048267 uc010bvi.4 L05628 NM_004996 CCDS42122 P33527 "8098549|1360704" MGI:102676 RGD:3112 ABCC1 158343 objectId:779 +HGNC:53 ABCC2 ATP binding cassette subfamily C member 2 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "DJS|MRP2|cMRP" CMOAT "canalicular multispecific organic anion transporter 1|ATP-binding cassette, sub-family C (CFTR/MRP), member 2" ATP binding cassette subfamily C 807 1997-05-09 2015-11-13 2016-10-05 1244 ENSG00000023839 OTTHUMG00000018895 uc001kqf.3 U63970 NM_000392 CCDS7484 Q92887 "8797578|9284939" MGI:1352447 RGD:2366 ABCC2 601107 117652 objectId:780 +HGNC:54 ABCC3 ATP binding cassette subfamily C member 3 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "MRP3|cMOAT2|EST90757|MLP2|MOAT-D" canalicular multispecific organic anion transporter 2 ATP-binding cassette, sub-family C (CFTR/MRP), member 3 ATP binding cassette subfamily C 807 1999-10-26 2015-11-13 2016-10-05 8714 ENSG00000108846 OTTHUMG00000162245 uc002isl.4 Y17151 NM_020038 "CCDS32681|CCDS45739" O15438 "8894702|9827529" MGI:1923658 RGD:71101 ABCC3 604323 objectId:781 +HGNC:55 ABCC4 ATP binding cassette subfamily C member 4 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "MRP4|EST170205|MOAT-B|MOATB" "canalicular multispecific organic anion transporter (ABC superfamily)|bA464I2.1 (ATP-binding cassette, sub-family C (CFTR/MRP), member 4)|multidrug resistance-associated protein 4|multispecific organic anion transporter B" ATP-binding cassette, sub-family C (CFTR/MRP), member 4 ATP binding cassette subfamily C 807 1999-10-26 2015-11-13 2016-10-05 10257 ENSG00000125257 OTTHUMG00000017216 uc001vmd.5 U66682 NM_005845 "CCDS9474|CCDS45061|CCDS76643" O15439 "8894702|9661885" MGI:2443111 RGD:620266 ABCC4 605250 objectId:782 +HGNC:56 ABCC5 ATP binding cassette subfamily C member 5 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "MRP5|SMRP|EST277145|MOAT-C" ATP-binding cassette, sub-family C (CFTR/MRP), member 5 ATP binding cassette subfamily C 807 1999-10-26 2015-11-13 2016-10-05 10057 ENSG00000114770 OTTHUMG00000156871 uc003fmg.4 AF104942 NM_005688 "CCDS33898|CCDS43176" O15440 "8894702|9827529" MGI:1351644 RGD:70913 ABCC5 605251 objectId:783 +HGNC:40055 ABCC5-AS1 ABCC5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.1 03q27.1 ABCC5 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-18 100873982 ENSG00000223882 OTTHUMG00000156870 uc031scp.1 NR_046570 +HGNC:57 ABCC6 ATP binding cassette subfamily C member 6 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 "MRP6|EST349056|MLP1|URG7" "ARA|PXE" "pseudoxanthoma elasticum|ATP-binding cassette, sub-family C (CFTR/MRP), member 6" ATP binding cassette subfamily C 807 1997-10-27 2015-11-13 2015-11-13 368 ENSG00000091262 OTTHUMG00000129967 uc002den.5 AF076622 XM_011522479 "CCDS10568|CCDS58430" O95255 "9721217|11439001" MGI:1351634 RGD:620268 "Mutations of the Multidrug Resistance-associated Protein 6 (ABCC6/ MPR6/ MOAT-E)|http://www.retina-international.org/files/sci-news/abcc6mut.htm|LOVD at NCBI|http://www.ncbi.nlm.nih.gov/lovd/home.php?select_db=ABCC6" ABCC6 603234 117658 objectId:784 +HGNC:33352 ABCC6P1 ATP binding cassette subfamily C member 6 pseudogene 1 pseudogene pseudogene Approved 16p12.3 16p12.3 "ATP-binding cassette, sub-family C, member 6 pseudogene 1|ATP-binding cassette, sub-family C, member 6 pseudogene 1 (functional)|ATP binding cassette subfamily C member 6 pseudogene 1 (functional)" Transcribed pseudogenes with published function 859 2007-02-23 2016-01-29 2016-08-22 653190 ENSG00000256340 OTTHUMG00000177192 BC075833 NR_003569 "18405356|22873774" PGOHUM00000307541 +HGNC:33353 ABCC6P2 ATP binding cassette subfamily C member 6 pseudogene 2 pseudogene pseudogene Approved 16p13.11 16p13.11 ATP-binding cassette, sub-family C, member 6 pseudogene 2 2007-02-23 2015-11-13 2016-08-22 730013 ENSG00000255277 OTTHUMG00000166266 NR_023387 22873774 PGOHUM00000293430 +HGNC:59 ABCC8 ATP binding cassette subfamily C member 8 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "HI|PHHI|SUR1|MRP8|ABC36|HHF1|TNDM2" sulfonylurea receptor (hyperinsulinemia) "SUR|HRINS" ATP-binding cassette, sub-family C (CFTR/MRP), member 8 ATP binding cassette subfamily C 807 1995-01-10 2015-11-13 2016-10-12 6833 ENSG00000006071 OTTHUMG00000166316 uc001mnc.4 L78207 NM_000352 "CCDS31437|CCDS73264" Q09428 "7920639|7716548" MGI:1352629 RGD:3786 LRG_790|http://www.lrg-sequence.org/LRG/LRG_790 ABCC8 600509 117665 objectId:2594 +HGNC:60 ABCC9 ATP binding cassette subfamily C member 9 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "SUR2|CMD1O" sulfonylurea receptor 2 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 ATP binding cassette subfamily C 807 1999-10-26 2015-11-13 2016-10-12 10060 ENSG00000069431 OTTHUMG00000169094 uc001rfi.2 AF061323 NM_005691 "CCDS8693|CCDS8694" O60706 "9457174|15034580" MGI:1352630 RGD:3787 LRG_377|http://www.lrg-sequence.org/LRG/LRG_377 ABCC9 601439 117673 objectId:2746 +HGNC:52 ABCC10 ATP binding cassette subfamily C member 10 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "EST182763|MRP7|SIMRP7" ATP-binding cassette, sub-family C (CFTR/MRP), member 10 ATP binding cassette subfamily C 807 1999-10-26 2015-11-13 2016-10-05 89845 ENSG00000124574 OTTHUMG00000014733 uc003ouz.1 U66684 NM_033450 "CCDS4896|CCDS56430" Q5T3U5 8894702 MGI:2386976 RGD:1306696 ABCC10 612509 objectId:785 +HGNC:14639 ABCC11 ATP binding cassette subfamily C member 11 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 MRP8 ATP-binding cassette, sub-family C (CFTR/MRP), member 11 ATP binding cassette subfamily C 807 2001-06-01 2015-11-13 2016-10-05 85320 ENSG00000121270 OTTHUMG00000133146 uc059txd.1 AF367202 NM_032583 "CCDS10732|CCDS10733" Q96J66 "11483364|11435397" ABCC11 607040 objectId:786 +HGNC:14640 ABCC12 ATP binding cassette subfamily C member 12 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 MRP9 ATP-binding cassette, sub-family C (CFTR/MRP), member 12 ATP binding cassette subfamily C 807 2001-08-16 2015-11-13 2015-11-13 94160 ENSG00000140798 OTTHUMG00000133143 uc002efc.1 AY040220 NM_033226 CCDS10730 Q96J65 "11435397|11483364" MGI:2441679 RGD:735100 ABCC12 607041 objectId:787 +HGNC:16022 ABCC13 ATP binding cassette subfamily C member 13 (pseudogene) pseudogene pseudogene Approved 21q11.2 21q11.2 "PRED6|C21orf73|ABCC13P" ATP-binding cassette, sub-family C (CFTR/MRP), member 13 ATP binding cassette subfamily C 807 2002-11-11 2016-01-06 2016-01-06 150000 ENSG00000243064 OTTHUMG00000074257 AF418600 NR_003087 Q9NSE7 12445816 608835 PGOHUM00000258120 +HGNC:61 ABCD1 ATP binding cassette subfamily D member 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "AMN|ALDP|adrenoleukodystrophy" ALD ATP-binding cassette, sub-family D (ALD), member 1 ATP binding cassette subfamily D 808 1986-01-01 2015-11-13 2016-10-12 215 ENSG00000101986 OTTHUMG00000024215 uc004fif.2 Z21876 NM_000033 CCDS14728 P33897 "8441467|6795626" MGI:1349215 RGD:1562128 "X-linked Adrenoleukodystrophy Database|http://www.x-ald.nl|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ABCD1|LRG_1017|http://www.lrg-sequence.org/LRG/LRG_1017" ABCD1 300371 117677 objectId:788 +HGNC:62 ABCD1P1 ATP binding cassette subfamily D member 1 pseudogene 1 pseudogene pseudogene Approved 2p11.2 02p11.2 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 1 1999-10-29 2015-11-13 2016-10-05 23785 U90290 NG_001246 "8829626|9215666" +HGNC:63 ABCD1P2 ATP binding cassette subfamily D member 1 pseudogene 2 pseudogene pseudogene Approved 10p11.1 10p11.1 bA453N3.6 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 2 1999-12-17 2015-11-13 2015-11-13 26983 ENSG00000215151 OTTHUMG00000018003 U90288 NG_001270 9215666 PGOHUM00000238740 +HGNC:64 ABCD1P3 ATP binding cassette subfamily D member 1 pseudogene 3 pseudogene pseudogene Approved 16p11.2 16p11.2 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 3 1999-12-17 2015-11-13 2015-11-13 26982 ENSG00000261233 OTTHUMG00000176500 U90289 NG_001269 9215666 PGOHUM00000259051 +HGNC:65 ABCD1P4 ATP binding cassette subfamily D member 1 pseudogene 4 pseudogene pseudogene Approved 22q11.1 22q11.1 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 4 1999-12-17 2015-11-13 2015-11-13 26957 ENSG00000225293 OTTHUMG00000030330 U90291 NG_001265 "9215666|10591208" PGOHUM00000246377 +HGNC:42662 ABCD1P5 ATP binding cassette subfamily D member 1 pseudogene 5 pseudogene pseudogene Approved 2p11.1 02p11.1 ATP-binding cassette, sub-family D (ALD), member 1, pseudogene 5 2011-08-12 2015-11-13 2015-11-13 642762 ENSG00000214330 OTTHUMG00000155089 NG_006974 PGOHUM00000240771 +HGNC:66 ABCD2 ATP binding cassette subfamily D member 2 protein-coding gene gene with protein product Approved 12q12 12q12 "ALDR|ALDRP" ALDL1 ATP-binding cassette, sub-family D (ALD), member 2 ATP binding cassette subfamily D 808 1997-10-10 2015-11-13 2015-11-13 225 ENSG00000173208 OTTHUMG00000169337 uc001rmb.3 U28150 NM_005164 CCDS8734 Q9UBJ2 8577752 MGI:1349467 RGD:69244 ABCD2 601081 objectId:789 +HGNC:67 ABCD3 ATP binding cassette subfamily D member 3 protein-coding gene gene with protein product Approved 1p21.3 01p21.3 "PMP70|ZWS2" PXMP1 ATP-binding cassette, sub-family D (ALD), member 3 "ATP binding cassette subfamily D|GOLD domain containing" "808|1062" 1992-03-03 2015-11-13 2015-11-13 5825 ENSG00000117528 OTTHUMG00000010717 uc001dqn.5 M81182 NM_002858 "CCDS749|CCDS44175" P28288 "1301993|8449508" MGI:1349216 RGD:2007 ABCD3 170995 objectId:790 +HGNC:68 ABCD4 ATP binding cassette subfamily D member 4 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "PMP69|P70R|EST352188" PXMP1L ATP-binding cassette, sub-family D (ALD), member 4 ATP binding cassette subfamily D 808 1997-10-27 2015-11-13 2016-10-05 5826 ENSG00000119688 OTTHUMG00000171207 uc001xpr.3 AF009746 NM_005050 CCDS9828 O14678 "9266848|9302272" MGI:1349217 RGD:1307273 ABCD4 603214 315413 +HGNC:69 ABCE1 ATP binding cassette subfamily E member 1 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "RLI|OABP|RLI1" RNase L inhibitor 1 "RNASEL1|RNASELI|RNS4I" ATP-binding cassette, sub-family E (OABP), member 1 ATP binding cassette subfamily E 809 1995-11-01 2015-11-13 2016-10-05 6059 ENSG00000164163 OTTHUMG00000161478 uc003ijy.4 X74987 NM_002940 CCDS34071 P61221 7539425 MGI:1195458 RGD:1305301 ABCE1 601213 +HGNC:70 ABCF1 ATP binding cassette subfamily F member 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 EST123147 ABC50 ATP-binding cassette, sub-family F (GCN20), member 1 ATP binding cassette subfamily F 810 1998-04-07 2015-11-13 2015-11-13 23 ENSG00000204574 OTTHUMG00000031094 uc003nql.4 AF027302 NM_001025091 "CCDS34380|CCDS34381" Q8NE71 9790762 MGI:1351658 RGD:620286 ABCF1 603429 +HGNC:71 ABCF2 ATP binding cassette subfamily F member 2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "EST133090|ABC28|M-ABC1|HUSSY-18" ATP-binding cassette, sub-family F (GCN20), member 2 ATP binding cassette subfamily F 810 1999-10-26 2015-11-13 2015-11-13 10061 ENSG00000033050 OTTHUMG00000154570 uc003wjp.5 AJ005016 NM_005692 "CCDS5922|CCDS5923" Q9UG63 8894702 MGI:1351657 RGD:1304942 ABCF2 612510 +HGNC:48841 ABCF2P1 ATP binding cassette subfamily F member 2 pseudogene 1 pseudogene pseudogene Approved 3p11.1 03p11.1 ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene 1 2013-06-19 2015-11-13 2015-11-13 344653 ENSG00000242159 OTTHUMG00000159043 NG_022253 PGOHUM00000238094 +HGNC:48842 ABCF2P2 ATP binding cassette subfamily F member 2 pseudogene 2 pseudogene pseudogene Approved 7q11.22 07q11.22 ATP-binding cassette, sub-family F (GCN20), member 2 pseudogene 2 2013-06-19 2015-11-13 2015-11-13 100422059 ENSG00000228769 OTTHUMG00000156669 NG_026596 PGOHUM00000233410 +HGNC:72 ABCF3 ATP binding cassette subfamily F member 3 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 EST201864 ATP-binding cassette, sub-family F (GCN20), member 3 ATP binding cassette subfamily F 810 1999-10-26 2015-11-13 2015-11-13 55324 ENSG00000161204 OTTHUMG00000156824 uc003fmz.3 U66685 NM_018358 CCDS3254 Q9NUQ8 8894702 MGI:1351656 RGD:1310468 ABCF3 +HGNC:73 ABCG1 ATP binding cassette subfamily G member 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 ABC8 ATP-binding cassette transporter 8 ATP-binding cassette, sub-family G (WHITE), member 1 ATP binding cassette subfamily G 811 1999-10-26 2015-11-13 2015-11-13 9619 ENSG00000160179 OTTHUMG00000086791 uc002zaq.4 U34919 NM_207174 "CCDS13681|CCDS13682|CCDS13683|CCDS42937|CCDS42938" P45844 "8659545|16870176" MGI:107704 RGD:620294 ABCG1 603076 objectId:791 +HGNC:74 ABCG2 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "EST157481|MXR|BCRP|ABCP|CD338" "ATP-binding cassette, sub-family G (WHITE), member 2|ATP-binding cassette, sub-family G (WHITE), member 2 (Junior blood group)" "Blood group antigens|CD molecules|ATP binding cassette subfamily G" "454|471|811" 1999-10-26 2015-11-13 2016-10-12 9429 ENSG00000118777 OTTHUMG00000130601 uc003hrg.4 AF103796 NM_004827 "CCDS3628|CCDS58910" Q9UNQ0 "8894702|9861027" MGI:1347061 RGD:631345 LRG_823|http://www.lrg-sequence.org/LRG/LRG_823 ABCG2 603756 objectId:792 CDw338 +HGNC:13884 ABCG4 ATP binding cassette subfamily G member 4 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 WHITE2 "putative ABC transporter|ATP-binding cassette, subfamily G, member 4" ATP-binding cassette, sub-family G (WHITE), member 4 ATP binding cassette subfamily G 811 2001-08-16 2015-11-13 2016-10-05 64137 ENSG00000172350 OTTHUMG00000166169 uc031yhk.2 AJ300465 NM_022169 CCDS8415 Q9H172 11435397 MGI:1890594 RGD:1305840 ABCG4 607784 objectId:793 +HGNC:13886 ABCG5 ATP binding cassette subfamily G member 5 protein-coding gene gene with protein product Approved 2p21 02p21 STSL sterolin 1 ATP-binding cassette, sub-family G (WHITE), member 5 ATP binding cassette subfamily G 811 2000-12-12 2015-11-13 2015-11-13 64240 ENSG00000138075 OTTHUMG00000128758 uc002rtn.3 T93792 NM_022436 CCDS1814 Q9H222 "11099417|11452359" MGI:1351659 RGD:620298 ABCG5 605459 117683 objectId:794 +HGNC:13887 ABCG8 ATP binding cassette subfamily G member 8 protein-coding gene gene with protein product Approved 2p21 02p21 GBD4 "gallbladder disease 4|sterolin 2" "ATP-binding cassette, sub-family G (WHITE), member 8 (sterolin 2)|ATP-binding cassette, sub-family G (WHITE), member 8" ATP binding cassette subfamily G 811 2000-12-12 2015-11-13 2015-11-13 64241 ENSG00000143921 OTTHUMG00000128756 uc002rtq.3 AF320294 NM_022437 CCDS1815 Q9H221 "11099417|17626266" MGI:1914720 RGD:620300 ABCG8 605460 117685 objectId:795 +HGNC:17553 ABHD1 abhydrolase domain containing 1 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "LABH1|FLJ36128" Abhydrolase domain containing 4 2002-06-20 2014-11-19 84696 ENSG00000143994 OTTHUMG00000097072 uc002rit.4 AK093447 NM_032604 CCDS1736 Q96SE0 11922611 MGI:1931013 RGD:1310988 ABHD1 612195 +HGNC:18717 ABHD2 abhydrolase domain containing 2 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 LABH2 Abhydrolase domain containing 4 2002-06-20 2015-08-24 11057 ENSG00000140526 OTTHUMG00000148684 uc002bnk.2 X12433 NM_152924 CCDS10348 P08910 MGI:1914344 RGD:1311389 ABHD2 612196 S33.019 +HGNC:18718 ABHD3 abhydrolase domain containing 3 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 LABH3 Abhydrolase domain containing 4 2002-06-20 2016-10-04 171586 ENSG00000158201 OTTHUMG00000179099 uc002ktl.2 AK024880 XM_011525847 "CCDS32802|CCDS77159|CCDS77160" Q8WU67 MGI:2147183 RGD:1310655 ABHD3 612197 +HGNC:20154 ABHD4 abhydrolase domain containing 4 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ12816 Abhydrolase domain containing 4 2002-12-18 2016-10-05 63874 ENSG00000100439 OTTHUMG00000028686 uc001wgm.4 AK022878 XM_005267986 CCDS9572 Q8TB40 MGI:1915938 RGD:1311858 ABHD4 S33.013 +HGNC:21396 ABHD5 abhydrolase domain containing 5 protein-coding gene gene with protein product Approved 3p21.33 03p21.33 "CGI-58|NCIE2" Abhydrolase domain containing 4 2003-06-16 2015-08-24 51099 ENSG00000011198 OTTHUMG00000133039 uc003cmx.4 AF007132 NM_016006 CCDS2711 Q8WTS1 "11590543|18606822" MGI:1914719 RGD:1303237 ABHD5 604780 117687 S33.975 +HGNC:21398 ABHD6 abhydrolase domain containing 6 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 Abhydrolase domain containing 4 2003-06-13 2016-10-05 57406 ENSG00000163686 OTTHUMG00000159150 uc003djt.5 AF225418 NM_020676 CCDS2887 Q9BV23 22969151 MGI:1913332 RGD:1359323 ABHD6 616966 S33.977 +HGNC:23759 ABHD8 abhydrolase domain containing 8 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FLJ11743|MGC14280|MGC2512" Abhydrolase domain containing 4 2003-12-08 2016-10-05 79575 ENSG00000127220 OTTHUMG00000182663 uc002ngb.4 AK021805 NM_024527 CCDS12355 Q96I13 12477932 MGI:1918946 RGD:1305693 ABHD8 S33.011 +HGNC:25656 ABHD10 abhydrolase domain containing 10 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 FLJ11342 Abhydrolase domain containing 4 2005-01-24 2012-03-26 55347 ENSG00000144827 OTTHUMG00000159280 uc003dyk.6 AL713726 NM_018394 "CCDS2963|CCDS63718" Q9NUJ1 22294686 MGI:2442422 RGD:1308084 ABHD10 S09.062 +HGNC:16407 ABHD11 abhydrolase domain containing 11 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 PP1226 WBSCR21 Williams Beuren syndrome chromosome region 21 Abhydrolase domain containing 4 2001-08-24 2005-01-27 2005-01-24 2015-08-26 83451 ENSG00000106077 OTTHUMG00000130029 uc003tzb.4 AF217971 NM_148912 "CCDS5558|CCDS47607|CCDS47608|CCDS75615" Q8NFV4 12073013 MGI:1916008 RGD:1304681 ABHD11 S33.976 +HGNC:18289 ABHD11-AS1 ABHD11 antisense RNA 1 (tail to tail) non-coding RNA RNA, long non-coding Approved 7q11.23 07q11.23 NCRNA00035 non-protein coding RNA 35 "WBSCR26|LINC00035" "Williams Beuren syndrome chromosome region 26|Williams Beuren syndrome chromosome region 26 (non-protein coding)|long intergenic non-protein coding RNA 35" Long non-coding RNAs 788 2002-03-05 2014-07-08 2014-07-08 2015-02-12 171022 ENSG00000225969 OTTHUMG00000153263 BU595969 NR_026690 "24984296|25619660" RGD:1585479 612545 +HGNC:40012 ABHD11-AS2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:15868 ABHD12 abhydrolase domain containing 12 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "DKFZP434P106|dJ965G21.2|BEM46L2|ABHD12A" C20orf22 chromosome 20 open reading frame 22 Abhydrolase domain containing 4 2001-06-21 2006-03-10 2006-03-10 2015-08-24 26090 ENSG00000100997 OTTHUMG00000032121 uc002wus.3 AL117442 NM_015600 "CCDS13172|CCDS42857" Q8N2K0 22969151 MGI:1923442 RGD:1562570 ABHD12 613599 239970 S09.054 +HGNC:19837 ABHD12B abhydrolase domain containing 12B protein-coding gene gene with protein product Approved 14q22.1 14q22.1 BEM46L3 C14orf29 chromosome 14 open reading frame 29 Abhydrolase domain containing 4 2002-11-27 2007-04-03 2007-04-03 2016-10-05 145447 ENSG00000131969 OTTHUMG00000140286 uc001wyr.3 BG698443 XM_011536474 "CCDS9702|CCDS55916" Q7Z5M8 MGI:2685650 RGD:1303145 ABHD12B S09.061 +HGNC:20293 ABHD13 abhydrolase domain containing 13 protein-coding gene gene with protein product Approved 13q33.3 13q33.3 "bA153I24.2|FLJ14906|BEM46L1" C13orf6 chromosome 13 open reading frame 6 Abhydrolase domain containing 4 2004-04-16 2006-03-10 2006-03-10 2016-10-05 84945 ENSG00000139826 OTTHUMG00000017330 uc001vqq.4 AK027812 NM_032859 CCDS32007 Q7L211 MGI:1916154 RGD:1308317 ABHD13 S09.051 +HGNC:24538 ABHD14A abhydrolase domain containing 14A protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "DKFZP564O243|DORZ1" Abhydrolase domain containing 4 2005-03-16 2016-10-05 25864 ENSG00000248487 OTTHUMG00000157818 uc003dco.4 AY358201 NM_015407 CCDS2843 Q9BUJ0 MGI:1915894 RGD:1309721 ABHD14A S33.981 +HGNC:38856 ABHD14A-ACY1 ABHD14A-ACY1 readthrough other readthrough Approved 3p21.2 03p21.2 ABHD14A-ACY1 readthrough (NMD candidate) 2011-05-31 2015-10-15 2015-10-16 100526760 ENSG00000114786 OTTHUMG00000166447 uc062kji.1 NM_001316331 RGD:2030 +HGNC:28235 ABHD14B abhydrolase domain containing 14B protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "MGC15429|CIB" Abhydrolase domain containing 4 2005-12-22 2015-07-16 84836 ENSG00000114779 OTTHUMG00000157816 uc003dcn.3 AK075112 NM_032750 CCDS2842 Q96IU4 MGI:1923741 RGD:1359649 ABHD14B S33.983 +HGNC:26971 ABHD15 abhydrolase domain containing 15 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 Abhydrolase domain containing 4 2009-04-06 2009-11-20 116236 ENSG00000168792 OTTHUMG00000179721 uc002hed.3 AK056717 NM_198147 CCDS32602 Q6UXT9 12975309 MGI:1914727 RGD:1304598 ABHD15 +HGNC:49685 ABHD15-AS1 ABHD15 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q11.2 17q11.2 "linc-TP53I13|lnc-TP53I13" 2014-02-04 2014-02-10 104355133 ENSG00000264031 OTTHUMG00000179722 CN275323 24504737 +HGNC:13921 ABHD16A abhydrolase domain containing 16A protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "NG26|D6S82E" BAT5 HLA-B associated transcript 5 Abhydrolase domain containing 4 2001-07-13 2010-12-09 2010-12-09 2016-10-05 7920 ENSG00000204427 OTTHUMG00000031177 uc003nvy.3 AF129756 NM_021160 "CCDS4713|CCDS54988" O95870 "2911734|2813433" MGI:99476 RGD:1303164 ABHD16A 142620 S09.065 +HGNC:16128 ABHD16B abhydrolase domain containing 16B protein-coding gene gene with protein product Approved 20q13.33 20q13.33 dJ591C20.1 C20orf135 chromosome 20 open reading frame 135 Abhydrolase domain containing 4 2001-07-17 2010-12-09 2010-12-09 2015-08-26 140701 ENSG00000183260 OTTHUMG00000033010 uc002ygx.3 NM_080622 CCDS13539 Q9H3Z7 MGI:3607711 RGD:1309726 ABHD16B +HGNC:28756 ABHD17A abhydrolase domain containing 17A protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC5244 "C19orf27|FAM108A1" "chromosome 19 open reading frame 27|family with sequence similarity 108, member A1" Abhydrolase domain containing 4 2004-03-17 2013-03-15 2013-03-15 2015-08-26 81926 ENSG00000129968 OTTHUMG00000171872 uc002lug.4 BC020512 NM_031213 "CCDS32867|CCDS45902" Q96GS6 14702039 MGI:106388 RGD:1359682 S09.052 +HGNC:28394 ABHD17AP1 abhydrolase domain containing 17A pseudogene 1 pseudogene pseudogene Approved 1q21.2 01q21.2 C1orf47 "FAM108A2|ABHD17AP2|FAM108A3|FAM108A11P|FAM108A3P" "family with sequence similarity 108, member A2|abhydrolase domain containing 17A pseudogene 2|family with sequence similarity 108, member A3|family with sequence similarity 108, member A11, pseudogene|family with sequence similarity 108, member A3, pseudogene" 2006-01-17 2013-03-15 2013-03-15 2015-01-29 728917 ENSG00000198658 OTTHUMG00000047949 NG_011738 PGOHUM00000296554 +HGNC:34041 ABHD17AP3 abhydrolase domain containing 17A pseudogene 3 pseudogene pseudogene Approved 1q41 01q41 "FAM108A4|FAM108A4P" "family with sequence similarity 108, member A4|family with sequence similarity 108, member A4, pseudogene" 2008-04-02 2013-03-15 2013-03-15 2013-03-15 648359 ENSG00000250536 OTTHUMG00000036949 XR_041784 PGOHUM00000259514 +HGNC:34042 ABHD17AP4 abhydrolase domain containing 17A pseudogene P4 pseudogene pseudogene Approved 22q11.21 22q11.21 "FAM108A5|FAM108A5P" "family with sequence similarity 108, member A5|family with sequence similarity 108, member A5, pseudogene" 2008-04-02 2013-03-15 2013-03-15 2014-11-19 729495 ENSG00000229107 OTTHUMG00000150752 NG_023156 PGOHUM00000246246 +HGNC:34043 ABHD17AP5 abhydrolase domain containing 17A pseudogene 5 pseudogene pseudogene Approved 22q11.22 22q11.22 "FAM108A6|FAM108A6P" "family with sequence similarity 108, member A6|family with sequence similarity 108, member A6, pseudogene" 2008-04-02 2013-03-15 2013-03-15 2015-07-29 91219 ENSG00000263366 OTTHUMG00000188359 NG_000002 9074928 PGOHUM00000297482 +HGNC:34044 ABHD17AP6 abhydrolase domain containing 17A pseudogene 6 pseudogene pseudogene Approved 17p11.2 17p11.2 FAM108A7P family with sequence similarity 108, member A7, pseudogene 2010-05-25 2013-03-15 2013-03-15 2014-11-19 644988 ENSG00000226981 OTTHUMG00000132836 NG_022988 PGOHUM00000237299 +HGNC:38508 ABHD17AP7 abhydrolase domain containing 17A pseudogene 7 pseudogene pseudogene Approved 16p11.2 16p11.2 FAM108A8P family with sequence similarity 108, member A8, pseudogene 2010-05-25 2013-03-15 2013-03-15 2015-09-21 100133212 ENSG00000260864 OTTHUMG00000176510 NG_022980 PGOHUM00000293533 +HGNC:38509 ABHD17AP8 abhydrolase domain containing 17A pseudogene 8 pseudogene pseudogene Approved 16p11.2 16p11.2 FAM108A9P family with sequence similarity 108, member A9, pseudogene 2010-05-25 2013-03-15 2013-03-15 2015-09-21 647144 ENSG00000260540 OTTHUMG00000176567 NG_023021 PGOHUM00000293798 +HGNC:38510 ABHD17AP9 abhydrolase domain containing 17A pseudogene 9 pseudogene pseudogene Approved 16p11.2 16p11.2 FAM108A10P family with sequence similarity 108, member A10, pseudogene 2010-05-25 2013-03-15 2013-03-15 2015-09-21 100132251 ENSG00000261536 OTTHUMG00000176455 NG_028293 PGOHUM00000293815 +HGNC:24278 ABHD17B abhydrolase domain containing 17B protein-coding gene gene with protein product Approved 9q21.13 09q21.13 CGI-67 "C9orf77|FAM108B1" "chromosome 9 open reading frame 77|family with sequence similarity 108, member B1" Abhydrolase domain containing 4 2004-01-27 2013-03-15 2013-03-15 2016-10-05 51104 ENSG00000107362 OTTHUMG00000020001 uc004ail.4 AF151825 NM_016014 "CCDS35042|CCDS35043" Q5VST6 10810093 MGI:1917816 RGD:1305246 S09.055 +HGNC:26925 ABHD17C abhydrolase domain containing 17C protein-coding gene gene with protein product Approved 15q25.1 15q25.1 FAM108C1 family with sequence similarity 108, member C1 Abhydrolase domain containing 4 2007-04-03 2013-03-15 2013-03-15 2015-07-16 58489 ENSG00000136379 uc002bfu.4 NM_021214 CCDS45323 Q6PCB6 MGI:1917428 RGD:1308210 S09.053 +HGNC:26111 ABHD18 abhydrolase domain containing 18 protein-coding gene gene with protein product Approved 4q28.2 04q28.2 FLJ21106 C4orf29 chromosome 4 open reading frame 29 2006-07-17 2015-10-16 2015-10-16 2015-10-16 80167 ENSG00000164074 OTTHUMG00000133304 AK024759 NM_001039717 Q0P651 12477932 MGI:1915468 RGD:1563987 +HGNC:11320 ABI1 abl interactor 1 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "E3B1|ABI-1" SSH3BP1 "spectrin SH3 domain binding protein 1|abl-interactor 1" 1999-05-17 2004-03-19 2015-12-04 2015-12-04 10006 ENSG00000136754 OTTHUMG00000017848 uc001isx.4 U87166 NM_005470 "CCDS7150|CCDS31169|CCDS31170|CCDS31171|CCDS53497|CCDS53498|CCDS53499|CCDS53500|CCDS53501|CCDS73077|CCDS73078" Q8IZP0 "9593709|9010225" MGI:104913 RGD:621008 ABI1 603050 +HGNC:20035 ABI1P1 abl interactor 1 pseudogene 1 pseudogene pseudogene Approved 14q22.3 14q22.3 "SSH3BP1P|ABI1P" "spectrin SH3 domain binding protein 1 pseudogene|abl-interactor 1 pseudogene" 2003-01-13 2010-01-12 2016-05-26 2016-10-04 326268 ENSG00000271484 OTTHUMG00000184542 NG_002531 PGOHUM00000292672 +HGNC:24011 ABI2 abl interactor 2 protein-coding gene gene with protein product Approved 2q33.2 02q33.2 "ABI-2|AIP-1|ABI2B|AblBP3|argBPIA|SSH3BP2" abl-interactor 2 2004-03-11 2016-05-26 2016-10-05 10152 ENSG00000138443 OTTHUMG00000132879 uc002uzz.5 AF260261 NM_005759 "CCDS2358|CCDS63093|CCDS63094|CCDS74634" Q9NYB9 "7590236|10964520" MGI:106913 RGD:628771 ABI2 606442 +HGNC:29859 ABI3 ABI family member 3 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "NESH|SSH3BP3" ABI family, member 3 2004-03-11 2015-11-18 2016-10-05 51225 ENSG00000108798 OTTHUMG00000161306 uc002iop.1 AB037886 NM_016428 "CCDS11546|CCDS45725" Q9P2A4 "10978530|11956071" MGI:1913860 RGD:1311794 ABI3 606363 +HGNC:17265 ABI3BP ABI family member 3 binding protein protein-coding gene gene with protein product Approved 3q12.2 03q12.2 "NESHBP|DKFZP586L2024|TARSH" target of Nesh-SH3 ABI family, member 3 (NESH) binding protein Fibronectin type III domain containing 555 2004-11-30 2015-11-17 2015-11-17 25890 ENSG00000154175 OTTHUMG00000159094 uc003dun.4 AB056106 XM_017006105 CCDS46880 Q7Z7G0 11501947 MGI:2444583 RGD:1562717 ABI3BP 606279 +HGNC:76 ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding gene gene with protein product Approved 9q34.12 09q34.12 "JTK7|c-ABL|p150" ABL "v-abl Abelson murine leukemia viral oncogene homolog 1|c-abl oncogene 1, receptor tyrosine kinase|c-abl oncogene 1, non-receptor tyrosine kinase" SH2 domain containing 741 1986-01-01 2014-06-26 2016-10-12 25 ENSG00000097007 OTTHUMG00000020813 uc004bzv.4 M14752 NM_007313 "CCDS35165|CCDS35166" P00519 "1857987|12626632" MGI:87859 RGD:1584969 LRG_769|http://www.lrg-sequence.org/LRG/LRG_769 ABL1 189980 117691 objectId:1923 +HGNC:77 ABL2 ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding gene gene with protein product Approved 1q25.2 01q25.2 ARG Abelson-related gene ABLL "v-abl Abelson murine leukemia viral oncogene homolog 2 (arg, Abelson-related gene)|v-abl Abelson murine leukemia viral oncogene homolog 2|c-abl oncogene 2, non-receptor tyrosine kinase" SH2 domain containing 741 1986-01-01 2014-06-26 2016-04-25 27 ENSG00000143322 OTTHUMG00000035199 uc001gmj.5 M14904 NM_005158 "CCDS30947|CCDS41441|CCDS44282|CCDS44283|CCDS53435|CCDS53436|CCDS53437|CCDS53438" P42684 3787260 MGI:87860 RGD:1590898 ABL2 164690 objectId:1924 +HGNC:78 ABLIM1 actin binding LIM protein 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "abLIM|limatin" "LIMAB1|ABLIM" LIM domain containing 1218 1997-10-10 2002-09-13 2016-10-05 3983 ENSG00000099204 OTTHUMG00000019088 uc057wcy.1 AF005654 NM_001322888 "CCDS7590|CCDS31289|CCDS31288|CCDS81508|CCDS81509" O14639 9245787 MGI:1194500 RGD:1565768 ABLIM1 602330 +HGNC:19195 ABLIM2 actin binding LIM protein family member 2 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 KIAA1808 "actin binding LIM protein 2|actin binding LIM protein family, member 2" LIM domain containing 1218 2002-09-19 2015-11-18 2015-11-18 84448 ENSG00000163995 OTTHUMG00000057427 uc003gkj.5 AB058711 NM_001130083 "CCDS47011|CCDS47012|CCDS47013|CCDS47014|CCDS47015|CCDS47016|CCDS54719|CCDS68669" Q6H8Q1 MGI:2385758 RGD:1303094 ABLIM2 612544 +HGNC:29132 ABLIM3 actin binding LIM protein family member 3 protein-coding gene gene with protein product Approved 5q32 05q32 KIAA0843 actin binding LIM protein family, member 3 LIM domain containing 1218 2004-01-22 2015-11-18 2016-10-05 22885 ENSG00000173210 OTTHUMG00000129932 uc003lpy.3 AB020650 NM_014945 "CCDS4294|CCDS78069|CCDS78071" O94929 MGI:2442582 RGD:1565118 ABLIM3 611305 +HGNC:79 ABO ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "A3GALNT|A3GALT1" "Glycosyltransferase family 6|Blood group antigens" "429|454" 1986-01-01 2016-10-12 28 ENSG00000175164 OTTHUMG00000020872 uc064wua.1 AF134415 NM_020469 P16442 184030 MGI:2135738 RGD:2307241 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_792|http://www.lrg-sequence.org/LRG/LRG_792" ABO 110300 "2.4.1.40|2.4.1.37" +HGNC:81 ABR active BCR-related protein-coding gene gene with protein product Approved 17p13.3 17p13.3 MDB active BCR-related gene "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|C2 domain containing" "682|722|823" 1990-04-11 2012-02-27 2016-10-05 29 ENSG00000159842 OTTHUMG00000090313 uc002fsd.6 L19704 NM_001322840 "CCDS10999|CCDS11000|CCDS54060|CCDS58497|CCDS73936" Q12979 "2587217|7479768" MGI:107771 RGD:1306279 ABR 600365 +HGNC:30655 ABRA actin binding Rho activating protein protein-coding gene gene with protein product Approved 8q23.1 08q23.1 STARS striated muscle activator of Rho-dependent signaling 2006-02-02 2015-04-29 2015-04-29 137735 ENSG00000174429 OTTHUMG00000164809 uc003ymm.5 AF503617 NM_139166 CCDS6305 Q8N0Z2 11983702 MGI:2444891 RGD:708493 ABRA 609747 +HGNC:21230 ABRACL ABRA C-terminal like protein-coding gene gene with protein product Approved 6q24.1 06q24.1 "PRO2013|HSPC280|Costars" C6orf115 chromosome 6 open reading frame 115 2003-05-29 2012-03-05 2012-03-05 2014-11-19 58527 ENSG00000146386 OTTHUMG00000015684 uc003qil.2 BC014953 NM_021243 CCDS43509 Q9P1F3 21082705 MGI:1920362 RGD:1583256 ABRACL +HGNC:17369 ABT1 activator of basal transcription 1 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 2002-07-23 2016-10-05 29777 ENSG00000146109 OTTHUMG00000016319 uc003nii.4 AB027258 NM_013375 CCDS4616 Q9ULW3 10648625 MGI:1353636 RGD:1310785 ABT1 +HGNC:39557 ABT1P1 activator of basal transcription 1 pseudogene 1 pseudogene pseudogene Approved 4q23 04q23 2011-02-25 2011-02-25 100420695 ENSG00000250496 OTTHUMG00000161229 NG_025142 PGOHUM00000245631 +HGNC:18275 ABTB1 ankyrin repeat and BTB domain containing 1 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "BPOZ|EF1ABP|Btb3|BTBD21" ankyrin repeat and BTB (POZ) domain containing 1 "Ankyrin repeat domain containing|BTB domain containing" "403|861" 2002-03-14 2016-02-12 2016-10-05 80325 ENSG00000114626 OTTHUMG00000159636 uc003ejt.4 AB053324 NM_172027 "CCDS3045|CCDS46901" Q969K4 "10891360|11494141" MGI:1933148 RGD:1359363 ABTB1 608308 +HGNC:23842 ABTB2 ankyrin repeat and BTB domain containing 2 protein-coding gene gene with protein product Approved 11p13 11p13 "DKFZP586C1619|BTBD22|ABTB2A" ankyrin repeat and BTB (POZ) domain containing 2 "Ankyrin repeat domain containing|BTB domain containing" "403|861" 2003-12-15 2016-02-12 2016-04-25 25841 ENSG00000166016 OTTHUMG00000044382 uc001mvl.3 AK056863 NM_145804 CCDS7890 Q8N961 MGI:2139365 RGD:620724 ABTB2 +HGNC:82 ACAA1 acetyl-CoA acyltransferase 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 peroxisomal 3-oxoacyl-Coenzyme A thiolase acetyl-Coenzyme A acyltransferase 1 1989-06-30 2010-04-30 2015-08-28 30 ENSG00000060971 OTTHUMG00000131087 uc003cht.4 X14813 NM_001607 "CCDS2673|CCDS46794" P09110 "MGI:2148491|MGI:3605455" RGD:67379 ACAA1 604054 2.3.1.16 +HGNC:83 ACAA2 acetyl-CoA acyltransferase 2 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 DSAEC mitochondrial 3-oxoacyl-Coenzyme A thiolase acetyl-Coenzyme A acyltransferase 2 1999-09-28 2010-04-30 2016-10-05 10449 ENSG00000167315 OTTHUMG00000132667 uc002ldw.5 D16294 NM_006111 CCDS11939 P42765 8241273 MGI:1098623 RGD:620482 ACAA2 604770 2.3.1.16 +HGNC:84 ACACA acetyl-CoA carboxylase alpha protein-coding gene gene with protein product Approved 17q12 17q12 ACC1 acetyl-CoA carboxylase 1 "ACAC|ACC" acetyl-Coenzyme A carboxylase alpha 1989-09-11 2010-04-30 2015-08-26 31 ENSG00000278540 OTTHUMG00000188463 uc284osy.1 U19822 NM_198836 "CCDS11317|CCDS11318|CCDS42302|CCDS42303" Q13085 MGI:108451 RGD:621248 ACACA 200350 objectId:1263 6.4.1.2 +HGNC:85 ACACB acetyl-CoA carboxylase beta protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "HACC275|ACC2|ACCB" acetyl-CoA carboxylase 2 acetyl-Coenzyme A carboxylase beta 1996-12-18 2010-04-30 2016-10-05 32 ENSG00000076555 OTTHUMG00000169250 uc001tob.4 U89344 NM_001093 CCDS31898 O00763 8670171 MGI:2140940 RGD:620500 ACACB 601557 objectId:1264 6.4.1.2 +HGNC:87 ACAD8 acyl-CoA dehydrogenase family member 8 protein-coding gene gene with protein product Approved 11q25 11q25 "acyl-Coenzyme A dehydrogenase family, member 8|acyl-CoA dehydrogenase family, member 8" Acyl-CoA dehydrogenase family 974 2000-01-07 2015-11-18 2016-10-12 27034 ENSG00000151498 OTTHUMG00000167177 uc001qhk.4 AF126245 NM_014384 CCDS8498 Q9UKU7 10524212 MGI:1914198 RGD:1564209 LRG_448|http://www.lrg-sequence.org/LRG/LRG_448 ACAD8 604773 123336 +HGNC:21497 ACAD9 acyl-CoA dehydrogenase family member 9 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "NPD002|MGC14452" "acyl-Coenzyme A dehydrogenase family, member 9|acyl-CoA dehydrogenase family, member 9" "Mitochondrial respiratory chain complex assembly factors|Acyl-CoA dehydrogenase family" "645|974" 2003-06-18 2015-11-18 2015-11-18 28976 ENSG00000177646 OTTHUMG00000159942 uc003ela.5 AF078854 NM_014049 CCDS3053 Q9H845 "12359260|21057504|20816094" MGI:1914272 RGD:727973 ACAD9 611103 123334 +HGNC:21597 ACAD10 acyl-CoA dehydrogenase family member 10 protein-coding gene gene with protein product Approved 12q24.12 12q24.12 MGC5601 "acyl-Coenzyme A dehydrogenase family, member 10|acyl-CoA dehydrogenase family, member 10" Acyl-CoA dehydrogenase family 974 2003-07-17 2015-11-18 2015-11-18 80724 ENSG00000111271 OTTHUMG00000169602 uc009zvx.4 AY323912 NM_025247 "CCDS31903|CCDS44973" Q6JQN1 15560374 MGI:1919235 RGD:1310159 ACAD10 611181 +HGNC:30211 ACAD11 acyl-CoA dehydrogenase family member 11 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 FLJ12592 "acyl-Coenzyme A dehydrogenase family, member 11|acyl-CoA dehydrogenase family, member 11" Acyl-CoA dehydrogenase family 974 2006-01-09 2015-11-18 2015-11-18 84129 ENSG00000240303 OTTHUMG00000159780 uc003eov.5 BC019607 NM_032169 CCDS3074 Q709F0 MGI:2143169 RGD:1306270 ACAD11 614288 +HGNC:88 ACADL acyl-CoA dehydrogenase, long chain protein-coding gene gene with protein product Approved 2q34 02q34 "LCAD|ACAD4" acyl-Coenzyme A dehydrogenase, long chain Acyl-CoA dehydrogenase family 974 1988-11-07 2010-04-30 2015-08-26 33 ENSG00000115361 OTTHUMG00000132989 uc002vdz.5 M74096 NM_001608 CCDS2389 P28330 1774065 MGI:87866 RGD:2011 ACADL 609576 159889 1.3.8.8 +HGNC:89 ACADM acyl-CoA dehydrogenase, C-4 to C-12 straight chain protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "MCAD|MCADH|ACAD1" acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain Acyl-CoA dehydrogenase family 974 1986-01-01 2010-04-30 2016-10-12 34 ENSG00000117054 OTTHUMG00000009784 uc001dgw.6 M16827 NM_000016 "CCDS668|CCDS44165|CCDS65562|CCDS72807" P11310 3035565 MGI:87867 RGD:2012 LRG_838|http://www.lrg-sequence.org/LRG/LRG_838 ACADM 607008 117700 1.3.8.7 +HGNC:90 ACADS acyl-CoA dehydrogenase, C-2 to C-3 short chain protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "SCAD|ACAD3" acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain Acyl-CoA dehydrogenase family 974 1986-01-01 2010-04-30 2014-11-18 35 ENSG00000122971 OTTHUMG00000169203 uc001tza.5 M26393 NM_000017 "CCDS9207|CCDS76610" P16219 2565344 MGI:87868 RGD:620514 ACADS 606885 117705 1.3.8.1 +HGNC:91 ACADSB acyl-CoA dehydrogenase, short/branched chain protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "SBCAD|ACAD7" acyl-Coenzyme A dehydrogenase, short/branched chain Acyl-CoA dehydrogenase family 974 1994-10-14 2010-04-30 2016-10-12 36 ENSG00000196177 OTTHUMG00000019200 uc001lhb.4 U12778 NM_001609 "CCDS7634|CCDS81518" P45954 "7698750|7759115" MGI:1914135 RGD:2013 LRG_451|http://www.lrg-sequence.org/LRG/LRG_451 ACADSB 600301 117709 1.3.99.- +HGNC:92 ACADVL acyl-CoA dehydrogenase, very long chain protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "VLCAD|LCACD|ACAD6" acyl-Coenzyme A dehydrogenase, very long chain Acyl-CoA dehydrogenase family 974 1996-05-30 2010-04-30 2015-08-26 37 ENSG00000072778 OTTHUMG00000102157 uc002gev.5 BC012912 NM_000018 "CCDS11090|CCDS42249|CCDS58509" P49748 8921384 MGI:895149 RGD:2014 ACADVL 609575 117713 +HGNC:86 ACAD entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:319 ACAN aggrecan protein-coding gene gene with protein product Approved 15q26.1 15q26.1 CSPGCP aggrecan proteoglycan "MSK16|CSPG1|AGC1" "chondroitin sulfate proteoglycan 1|aggrecan 1" "Hyalectan proteoglycans|V-set domain containing|Sushi domain containing|C-type lectin domain containing" "574|590|1179|1298" 1992-06-17 2007-02-16 2007-02-16 2013-05-07 176 ENSG00000157766 OTTHUMG00000171989 uc010upo.1 M55172 NM_001135 "CCDS53970|CCDS53971" P16112 1985970 MGI:99602 RGD:68358 ACAN 155760 117718 +HGNC:16467 ACAP1 ArfGAP with coiled-coil, ankyrin repeat and PH domains 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 KIAA0050 CENTB1 centaurin, beta 1 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2001-09-03 2008-09-22 2008-09-22 2015-08-26 9744 ENSG00000072818 OTTHUMG00000102199 uc002ggd.3 D30758 NM_014716 CCDS11101 Q15027 "11050434|11062263" MGI:2388270 RGD:1305360 ACAP1 607763 +HGNC:16469 ACAP2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding gene gene with protein product Approved 3q29 03q29 "KIAA0041|CNT-B2" CENTB2 centaurin, beta 2 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2001-09-03 2008-09-22 2008-09-22 2015-08-26 23527 ENSG00000114331 OTTHUMG00000155885 uc003fun.5 NM_012287 CCDS33924 Q15057 "11050434|11062263" MGI:1925868 RGD:1562939 ACAP2 607766 +HGNC:41426 ACAP2-IT1 ACAP2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 ACAP2 intronic transcript 1 (non-protein coding) 2011-05-04 2015-02-25 2015-02-25 100874306 ENSG00000229325 OTTHUMG00000155905 uc062rqs.1 +HGNC:16754 ACAP3 ArfGAP with coiled-coil, ankyrin repeat and PH domains 3 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 KIAA1716 CENTB5 centaurin, beta 5 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2001-10-29 2008-09-22 2008-09-22 2016-10-05 116983 ENSG00000131584 OTTHUMG00000002235 uc001aeb.3 AF411981 NM_030649 CCDS19 Q96P50 MGI:2153589 RGD:1310711 ACAP3 +HGNC:93 ACAT1 acetyl-CoA acetyltransferase 1 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 THIL acetoacetyl Coenzyme A thiolase ACAT acetyl-Coenzyme A acetyltransferase 1 1991-08-12 2010-04-30 2014-11-19 38 ENSG00000075239 OTTHUMG00000166381 uc001pjy.4 D90228 NM_000019 CCDS8339 P24752 1979337 MGI:87870 RGD:2016 ACAT1 607809 117724 objectId:2435 2.3.1.9 +HGNC:94 ACAT2 acetyl-CoA acetyltransferase 2 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 acetoacetyl Coenzyme A thiolase "acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase)|acetyl-Coenzyme A acetyltransferase 2" 1994-04-15 2010-04-30 2014-11-19 39 ENSG00000120437 OTTHUMG00000015935 uc010kjy.4 AF356877 NM_005891 CCDS5268 Q9BWD1 2475872 "MGI:87871|MGI:109182" RGD:1359366 ACAT2 100678 objectId:2436 2.3.1.9 +HGNC:15453 ACBD3 acyl-CoA binding domain containing 3 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 "GCP60|PAP7" PBR- and PKA-associated protein 7 "GOLPH1|GOCAP1" "golgi complex associated protein 1, 60kDa|acyl-Coenzyme A binding domain containing 3" A-kinase anchoring proteins 396 2001-04-27 2003-11-12 2010-04-30 2016-10-05 64746 ENSG00000182827 OTTHUMG00000037560 uc001hpy.4 AB043587 NM_022735 CCDS1551 Q9H3P7 "12692076|20150326" MGI:2181074 RGD:727851 ACBD3 606809 +HGNC:23337 ACBD4 acyl-CoA binding domain containing 4 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ13322 acyl-Coenzyme A binding domain containing 4 2003-11-11 2010-04-30 2015-08-24 79777 ENSG00000181513 OTTHUMG00000180111 uc002iic.4 BC029164 NM_024722 "CCDS42348|CCDS45710|CCDS45711" Q8NC06 MGI:1914381 RGD:1308404 ACBD4 +HGNC:23338 ACBD5 acyl-CoA binding domain containing 5 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "DKFZp434A2417|KIAA1996" acyl-Coenzyme A binding domain containing 5 2003-11-11 2010-04-30 2014-11-19 91452 ENSG00000107897 OTTHUMG00000017854 uc001ito.4 AF505653 NM_145698 "CCDS7154|CCDS44368|CCDS73079|CCDS76290" Q5T8D3 12056414 MGI:1921409 RGD:1309411 ACBD5 616618 +HGNC:23339 ACBD6 acyl-CoA binding domain containing 6 protein-coding gene gene with protein product Approved 1q25.2-q25.3 01q25.2-q25.3 MGC2404 acyl-Coenzyme A binding domain containing 6 Ankyrin repeat domain containing 403 2003-11-11 2010-04-30 2016-10-11 84320 ENSG00000230124 OTTHUMG00000035117 uc001gog.4 BC006505 NM_032360 CCDS1339 Q9BR61 18268358 MGI:1919732 RGD:1305030 ACBD6 616352 +HGNC:17715 ACBD7 acyl-CoA binding domain containing 7 protein-coding gene gene with protein product Approved 10p13 10p13 "FLJ38219|bA455B2.2" acyl-Coenzyme A binding domain containing 7 2004-05-27 2010-04-30 2015-08-26 414149 ENSG00000176244 OTTHUMG00000017725 uc001inv.4 AK095538 NM_001039844 CCDS31153 Q8N6N7 MGI:1925495 RGD:1564164 ACBD7 +HGNC:23989 ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "PHACS|ACS" 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional) 2008-01-25 2015-11-04 2016-10-05 84680 ENSG00000110455 OTTHUMG00000166427 uc001mxx.3 AY026508 NM_032592 CCDS7907 Q96QU6 11470512 MGI:1919717 RGD:1309314 ACCS 608405 +HGNC:34391 ACCSL 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding gene gene with protein product Approved 11p11.2 11p11.2 1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like 2008-11-26 2016-06-21 2016-06-21 390110 ENSG00000205126 OTTHUMG00000166426 uc001mxw.1 NM_001031854 CCDS41636 Q4AC99 MGI:3584519 RGD:1596039 ACCSL +HGNC:25070 ACD adrenocortical dysplasia homolog protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "Ptop|Pip1|Tpp1|Tint1" "TIN2 interacting protein 1|POT1 and TIN2 organizing protein" adrenocortical dysplasia homolog (mouse) Shelterin complex 1334 2005-01-04 2016-03-31 2016-10-05 65057 ENSG00000102977 OTTHUMG00000137547 uc002etp.5 AF070535 NM_022914 "CCDS10842|CCDS42181" Q96AP0 "15231715|15181449" MGI:87873 RGD:1565053 ACD 609377 419358 +HGNC:2707 ACE angiotensin I converting enzyme protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "ACE1|CD143" peptidyl-dipeptidase A DCP1 angiotensin I converting enzyme (peptidyl-dipeptidase A) 1 CD molecules 471 1989-06-06 2013-06-12 2015-08-24 1636 ENSG00000159640 OTTHUMG00000154927 uc002jau.4 J04144 XM_006721737 "CCDS11637|CCDS45755|CCDS54155" P12821 "2554286|10319862" MGI:87874 RGD:2493 ACE 106180 117728 XM02-001 objectId:1613 CD143 3.4.15.1 +HGNC:13557 ACE2 angiotensin I converting enzyme 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 peptidyl-dipeptidase A angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 2000-09-25 2013-06-12 2016-10-05 59272 ENSG00000130234 OTTHUMG00000021177 uc004cxb.2 AF291820 XM_011545551 CCDS14169 Q9BYF1 10969042 MGI:1917258 RGD:728890 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ACE2 ACE2 300335 M02.006 objectId:1614 3.4.17.23 +HGNC:44365 ACE3P angiotensin I converting enzyme 3, pseudogene pseudogene pseudogene Approved 17q23.3 17q23.3 peptidyl-dipeptidase A, pseudogene angiotensin I converting enzyme (peptidyl-dipeptidase A) 3, pseudogene 2012-08-22 2016-06-27 2016-06-27 100129123 ENSG00000224353 OTTHUMG00000155913 NG_016186 17597519 MGI:3644400 +HGNC:18356 ACER1 alkaline ceramidase 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ASAH3 N-acylsphingosine amidohydrolase (alkaline ceramidase) 3 Alkaline ceramidases 400 2003-09-29 2008-12-19 2008-12-19 2015-09-21 125981 ENSG00000167769 OTTHUMG00000180777 uc002mel.3 AF347024 NM_133492 CCDS12161 Q8TDN7 12783875 MGI:2181962 RGD:1588582 ACER1 613491 objectId:2468 3.5.1.23 +HGNC:23675 ACER2 alkaline ceramidase 2 protein-coding gene gene with protein product Approved 9p22.1 09p22.1 FLJ41587 ASAH3L N-acylsphingosine amidohydrolase 3-like Alkaline ceramidases 400 2004-05-28 2008-12-19 2008-12-19 2016-10-05 340485 ENSG00000177076 OTTHUMG00000019644 uc003zny.2 AK123581 XM_294540 CCDS34992 Q5QJU3 18945876 MGI:1920932 RGD:1304629 ACER2 613492 objectId:2469 3.5.1.23 +HGNC:16066 ACER3 alkaline ceramidase 3 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "FLJ11238|APHC" alkaline phytoceramidase PHCA phytoceramidase, alkaline Alkaline ceramidases 400 2002-01-03 2008-12-19 2008-12-19 2015-07-28 55331 ENSG00000078124 OTTHUMG00000165225 uc009yum.2 AF214454 NM_018367 "CCDS8247|CCDS73352|CCDS76454" Q9NUN7 "11356846|18619555" MGI:1913440 RGD:1561254 ACER3 617036 objectId:2470 3.5.1.23 +HGNC:108 ACHE acetylcholinesterase (Cartwright blood group) protein-coding gene gene with protein product Approved 7q22.1 07q22.1 Yt blood group YT "acetylcholinesterase (YT blood group)|acetylcholinesterase (Yt blood group)" Blood group antigens 454 1989-06-02 2016-03-30 2016-10-12 43 ENSG00000087085 OTTHUMG00000157033 uc003uxi.4 NM_015831 "CCDS5709|CCDS5710|CCDS64736" P22303 1380483 MGI:87876 RGD:69313 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_804|http://www.lrg-sequence.org/LRG/LRG_804" ACHE 100740 S09.979 objectId:2465 3.1.1.7 +HGNC:17066 ACIN1 apoptotic chromatin condensation inducer 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "KIAA0670|fSAP152" functional spliceosome-associated protein 152 ACINUS apoptotic chromatin condensation inducer in the nucleus ASAP complex 1236 2003-01-14 2004-04-01 2004-03-31 2014-11-18 22985 ENSG00000100813 OTTHUMG00000028716 uc001wit.5 AB014570 NM_014977 "CCDS9587|CCDS53887|CCDS53888|CCDS53889|CCDS55905" Q9UKV3 "9734811|10490026" MGI:1891824 RGD:1311945 ACIN1 604562 +HGNC:4035 ACKR1 atypical chemokine receptor 1 (Duffy blood group) protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "CCBP1|GPD|Dfy|CD234" atypical chemokine receptor 1 "FY|DARC" "Duffy blood group|Duffy blood group, chemokine receptor|Duffy blood group, atypical chemokine receptor" "Blood group antigens|CD molecules|Atypical chemokine receptors" "454|471|1090" 2001-06-22 2014-04-04 2014-04-04 2016-10-12 2532 ENSG00000213088 OTTHUMG00000037182 U01839 NM_002036 "CCDS1183|CCDS44252" Q16570 "8248172|7663520|16148" MGI:1097689 RGD:1596198 LRG_801|http://www.lrg-sequence.org/LRG/LRG_801 613665 objectId:316 CD234 +HGNC:1565 ACKR2 atypical chemokine receptor 2 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "CCR10|D6|CCR9" "CMKBR9|CCBP2" chemokine binding protein 2 Atypical chemokine receptors 1090 1998-04-28 2013-07-16 2013-07-16 2016-10-05 1238 ENSG00000144648 OTTHUMG00000186377 U94888 NM_001296 CCDS2706 O00590 "9364936|9405404|16148" MGI:1891697 RGD:620323 602648 objectId:314 +HGNC:23692 ACKR3 atypical chemokine receptor 3 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "RDC1|GPR159" "CMKOR1|CXCR7" "chemokine orphan receptor 1|chemokine (C-X-C motif) receptor 7" Atypical chemokine receptors 1090 2003-12-01 2013-07-16 2013-07-16 2014-11-19 57007 ENSG00000144476 OTTHUMG00000133295 BC008459 NM_020311 CCDS2516 P25106 "16107333|16148" MGI:109562 RGD:620601 610376 objectId:80 +HGNC:1611 ACKR4 atypical chemokine receptor 4 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "CCR11|CCBP2|VSHK1|CCX-CKR|PPR1" CCRL1 chemokine (C-C motif) receptor-like 1 Atypical chemokine receptors 1090 1999-02-18 2013-07-16 2013-07-16 2016-10-05 51554 ENSG00000129048 OTTHUMG00000159768 AF110640 NM_016557 CCDS3075 Q9NPB9 "10767544|16148" MGI:2181676 RGD:1596453 606065 objectId:315 +HGNC:114 ACLS acrocallosal syndrome phenotype phenotype only Approved 12p13.3-p11.2 12p13.3-p11.2 1993-01-19 2015-08-10 46 8723117 +HGNC:115 ACLY ATP citrate lyase protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "ATPCL|CLATP|ACL" ATP citrate synthase 1994-04-08 2014-11-19 47 ENSG00000131473 OTTHUMG00000133507 uc002hyg.4 X64330 NM_001096 "CCDS11412|CCDS11413" P53396 "1371749|8088842" MGI:103251 RGD:2018 ACLY 108728 2.3.3.8 +HGNC:116 ACMG entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:19288 ACMSD aminocarboxymuconate semialdehyde decarboxylase protein-coding gene gene with protein product Approved 2q21.3 02q21.3 2002-10-08 2015-08-24 130013 ENSG00000153086 OTTHUMG00000131711 uc002ttz.4 AB071418 XM_005263586 "CCDS2173|CCDS77464" Q8TDX5 12140278 MGI:2386323 RGD:620868 ACMSD 608889 4.1.1.45 +HGNC:117 ACO1 aconitase 1 protein-coding gene gene with protein product Approved 9p21.1 09p21.1 "IRP1|IREBP" "aconitate hydratase, cytoplasmic|soluble aconitase|cytosplasmic aconitase" IREB1 aconitase 1, soluble 1989-01-01 2015-12-01 2015-12-01 48 ENSG00000122729 OTTHUMG00000019740 uc003zqw.5 M58510 NM_002197 CCDS6525 P21399 "2172968|2771641" MGI:87879 RGD:2019 ACO1 100880 4.2.1.3 +HGNC:118 ACO2 aconitase 2 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 ACONM "aconitate hydratase, mitochondrial|mitochondrial aconitase" aconitase 2, mitochondrial 1986-01-01 2015-12-01 2015-12-01 50 ENSG00000100412 OTTHUMG00000030544 uc003bac.3 AH006514 NM_001098 CCDS14017 Q99798 10591208 MGI:87880 RGD:621360 ACO2 100850 317699 4.2.1.3 +HGNC:33904 ACOD1 aconitate decarboxylase 1 protein-coding gene gene with protein product Approved 13q22.3 13q22.3 CAD IRG1 immunoresponsive 1 homolog (mouse) 2007-11-27 2016-03-07 2016-03-07 2016-03-07 730249 ENSG00000102794 OTTHUMG00000017098 uc031qmi.3 XM_001133269 CCDS58299 A6NK06 "12893884|23610393" MGI:103206 RGD:1563454 615275 4.1.1.6 +HGNC:33128 ACOT1 acyl-CoA thioesterase 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "ACH2|CTE-1|LACH2" Acyl-CoA thioesterases 41 2006-08-30 2014-11-18 641371 ENSG00000184227 OTTHUMG00000171607 uc001xol.2 DQ082754 NM_001037161 CCDS32117 Q86TX2 "16103133|16940157" MGI:1349396 ACOT1 614313 +HGNC:18431 ACOT2 acyl-CoA thioesterase 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "Mte1|ZAP128" mitochondrial acyl-CoA thioesterase 1 Acyl-CoA thioesterases 41 2005-09-08 2014-11-19 10965 ENSG00000119673 OTTHUMG00000171608 uc059ddl.1 "AY005822|AK001939" NM_006821 CCDS9816 P49753 "16103133|16940157" MGI:2159605 RGD:621055 ACOT2 609972 S09.942 +HGNC:19748 ACOT4 acyl-CoA thioesterase 4 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "FLJ31235|PTE-Ib|PTE2B" Acyl-CoA thioesterases 41 2005-09-08 2016-10-05 122970 ENSG00000177465 OTTHUMG00000169485 uc001xoo.4 BC031799 NM_152331 CCDS9817 Q8N9L9 "16103133|16940157" MGI:2159621 RGD:1596753 ACOT4 614314 S09.943 +HGNC:33159 ACOT6 acyl-CoA thioesterase 6 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 C14orf42 chromosome 14 open reading frame 42 Acyl-CoA thioesterases 41 2006-10-23 2015-09-21 641372 ENSG00000205669 OTTHUMG00000171609 uc001xop.3 "DQ082756|BF109853" NM_001037162 CCDS32118 Q3I5F7 16940157 MGI:1921287 RGD:1309669 ACOT6 614267 S09.944 +HGNC:24157 ACOT7 acyl-CoA thioesterase 7 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "BACH|ACH1|ACT|CTE-II|LACH1|MGC1126|hBACH" brain acyl CoA hydrolase Acyl-CoA thioesterases 41 2005-09-07 2016-10-05 11332 ENSG00000097021 OTTHUMG00000001295 uc001ams.4 AB074417 NM_007274 "CCDS65|CCDS66|CCDS67|CCDS30573" O00154 "10578051|16103133|16940157" MGI:1917275 RGD:628856 ACOT7 602587 +HGNC:15919 ACOT8 acyl-CoA thioesterase 8 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "hACTE-III|hTE|PTE-2|NAP1" "choloyl-CoA hydrolase|Nef (lentivirus myristoylated factor) associated protein 1" PTE1 "peroxisomal acyl-CoA thioesterase|peroxisomal acyl-CoA thioesterase 1" Acyl-CoA thioesterases 41 2001-08-01 2005-09-19 2005-09-19 2015-10-16 10005 ENSG00000101473 OTTHUMG00000033045 uc002xqa.3 AF014404 NM_183386 CCDS13378 O14734 "10092594|9153233|16103133|16940157" MGI:2158201 RGD:70368 ACOT8 608123 3.1.2.27 +HGNC:17152 ACOT9 acyl-CoA thioesterase 9 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "CGI-16|MT-ACT48|ACATE2" Acyl-CoA thioesterases 41 2005-09-08 2014-11-19 23597 ENSG00000123130 OTTHUMG00000021257 uc004dap.4 AF132950 NM_012332 "CCDS35216|CCDS43924|CCDS83460" Q9Y305 "10383425|10810093|16103133|16940157" MGI:1928939 RGD:1359188 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ACOT9 ACOT9 300862 +HGNC:18156 ACOT11 acyl-CoA thioesterase 11 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "STARD14|BFIT|KIAA0707|BFIT1|THEM1" StAR-related lipid transfer (START) domain containing 14 THEA thioesterase, adipose associated "Acyl-CoA thioesterases|StAR related lipid transfer domain containing" "41|759" 2002-03-11 2005-09-08 2005-09-08 2014-11-18 26027 ENSG00000162390 OTTHUMG00000009891 uc001cxm.3 AB014607 NM_015547 "CCDS592|CCDS593" Q8WXI4 "11696000|16103133|16940157" MGI:1913736 RGD:2324815 ACOT11 606803 3.1.2.- +HGNC:24436 ACOT12 acyl-CoA thioesterase 12 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "Cach|THEAL|STARD15" StAR-related lipid transfer (START) domain containing 15 "Acyl-CoA thioesterases|StAR related lipid transfer domain containing" "41|759" 2005-09-08 2014-11-18 134526 ENSG00000172497 OTTHUMG00000131305 uc003khl.5 AB078619 NM_130767 CCDS4055 Q8WYK0 "16103133|16940157" MGI:1921406 RGD:619752 ACOT12 614315 +HGNC:20999 ACOT13 acyl-CoA thioesterase 13 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 HT012 THEM2 thioesterase superfamily member 2 Acyl-CoA thioesterases 41 2003-05-02 2009-05-05 2009-05-05 2016-10-05 55856 ENSG00000112304 OTTHUMG00000014359 uc003nek.4 AF220186 NM_018473 "CCDS4558|CCDS54972" Q9NPJ3 "16934754|19405909" MGI:1914084 RGD:1306513 ACOT13 615652 +HGNC:119 ACOX1 acyl-CoA oxidase 1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 PALMCOX palmitoyl-CoA oxidase "acyl-Coenzyme A oxidase 1, palmitoyl|acyl-CoA oxidase 1, palmitoyl" 1994-02-11 2016-06-01 2016-06-01 51 ENSG00000161533 OTTHUMG00000180027 uc002jqe.5 U03254 XM_011524868 "CCDS11734|CCDS11735" Q15067 8159712 MGI:1330812 RGD:619757 ACOX1 609751 117738 1.3.3.6 +HGNC:120 ACOX2 acyl-CoA oxidase 2 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "BRCACOX|BRCOX|THCCox" "trihydroxycoprostanoyl-CoA oxidase|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholestanoyl-CoA 24-hydroxylase|branched chain acyl-CoA oxidase" "acyl-Coenzyme A oxidase 2, branched chain|acyl-CoA oxidase 2, branched chain" 1998-09-17 2016-06-01 2016-06-01 8309 ENSG00000168306 OTTHUMG00000159154 uc003dkl.4 X95190 NM_003500 CCDS33775 Q99424 "8943006|9070889" MGI:1934852 RGD:628684 ACOX2 601641 1.17.99.3 +HGNC:121 ACOX3 acyl-CoA oxidase 3, pristanoyl protein-coding gene gene with protein product Approved 4p16.1 04p16.1 acyl-Coenzyme A oxidase 3, pristanoyl 1998-09-17 2010-04-30 2016-10-05 8310 ENSG00000087008 OTTHUMG00000090509 uc003glc.5 Y11411 XM_005248011 "CCDS3401|CCDS47017" O15254 9271077 MGI:1933156 RGD:69245 ACOX3 603402 1.3.3.6 +HGNC:25621 ACOXL acyl-CoA oxidase-like protein-coding gene gene with protein product Approved 2q13 02q13 FLJ11042 acyl-Coenzyme A oxidase-like 2004-02-13 2010-04-30 2015-08-26 55289 ENSG00000153093 OTTHUMG00000131257 uc021vmm.2 NM_018308 CCDS46389 Q9NUZ1 MGI:1921371 RGD:1306814 ACOXL +HGNC:122 ACP1 acid phosphatase 1, soluble protein-coding gene gene with protein product Approved 2p25.3 02p25.3 "HAAP|LMW-PTP" "acid phosphatase of erythrocyte|low molecular weight phosphotyrosine protein phosphatase|red cell acid phosphatase" "Class II Cys-based phosphatases|Acid phosphatases" "712|1071" 1986-01-01 2016-10-05 52 ENSG00000143727 OTTHUMG00000086933 uc002qwg.4 M87546 NM_004300 "CCDS1639|CCDS1640|CCDS46217" P24666 "457131|1587862|8586411" MGI:87881 RGD:2020 ACP1 171500 3.1.3.2 +HGNC:123 ACP2 acid phosphatase 2, lysosomal protein-coding gene gene with protein product Approved 11p11.2 11p11.2 LAP lysosomal acid phosphatase Acid phosphatases 1071 1986-01-01 2015-08-21 53 ENSG00000134575 OTTHUMG00000166949 uc001nei.3 X15525 NM_001610 "CCDS7928|CCDS76402|CCDS76403|CCDS76404" P11117 975882 MGI:87882 RGD:2021 ACP2 171650 3.1.3.2 +HGNC:124 ACP5 acid phosphatase 5, tartrate resistant protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "TRAP|HPAP" "tartrate-resistant acid phosphatase|human purple acid phosphatase" Acid phosphatases 1071 1989-02-23 2015-08-21 54 ENSG00000102575 OTTHUMG00000182036 uc002msi.5 X14618 NM_001611 CCDS12265 P13686 "8449511|2338077" MGI:87883 RGD:2022 ACP5 171640 259358 3.1.3.2 +HGNC:29609 ACP6 acid phosphatase 6, lysophosphatidic protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "LPAP|ACPL1" lysophosphatidic acid phosphatase Acid phosphatases 1071 2004-07-09 2016-10-05 51205 ENSG00000162836 OTTHUMG00000014019 uc001epr.3 BC009965 NM_016361 CCDS928 Q9NPH0 "12010880|10506173" MGI:1931010 RGD:1306336 ACP6 611471 +HGNC:33781 ACP7 acid phosphatase 7, tartrate resistant (putative) protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ16165|PAPL1" purple acid phosphatase long form 1 2015-11-18 2015-11-18 390928 ENSG00000183760 OTTHUMG00000182799 NM_001004318 CCDS33018 Q6ZNF0 16793224 MGI:2142121 RGD:1585399 610490 +HGNC:125 ACPP acid phosphatase, prostate protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "ACP3|ACP-3|PAP" prostatic acid phosphatase Acid phosphatases 1071 1989-05-30 2015-08-21 55 ENSG00000014257 OTTHUMG00000159650 uc010htp.3 NM_001099 "CCDS3073|CCDS46916|CCDS77818" P15309 "1375464|2842184" MGI:1928480 RGD:2023 ACPP 171790 3.1.3.2 +HGNC:14376 ACPT acid phosphatase, testicular protein-coding gene gene with protein product Approved 19q13.33 19q13.33 testicular acid phosphatase Acid phosphatases 1071 2001-07-13 2015-09-21 93650 ENSG00000142513 OTTHUMG00000182961 uc002pta.1 AF321918 NM_033068 CCDS12802 Q9BZG2 11414767 MGI:3644563 RGD:1308270 ACPT 606362 +HGNC:126 ACR acrosin protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "preproacrosin|acrosin light and heavy chain prepropeptide" 1989-05-19 2012-10-23 2014-11-19 49 ENSG00000100312 OTTHUMG00000150155 uc003bnh.5 CR456366 NM_001097 CCDS14101 P10323 "2298447|12398221" MGI:87884 RGD:2024 ACR 102480 S01.223 objectId:2327 3.4.21.10 +HGNC:17195 ACRBP acrosin binding protein protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "SP32|OY-TES-1|CT23" "proacrosin binding protein sp32|cancer/testis antigen 23" 2001-11-19 2009-03-12 84519 ENSG00000111644 OTTHUMG00000168715 uc001qpu.2 AB051833 NM_032489 CCDS8554 Q8NEB7 11248070 MGI:1859515 RGD:1564880 ACRBP 608352 +HGNC:15805 ACRC acidic repeat containing protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 2001-07-18 2014-11-19 93953 ENSG00000147174 OTTHUMG00000033327 uc004eae.3 AJ311392 XM_011531063 CCDS35326 Q96QF7 ACRC 300369 +HGNC:127 ACRV1 acrosomal vesicle protein 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "SPACA2|SP-10|D11S4365" sperm protein 10 1991-06-07 2014-11-19 56 ENSG00000134940 OTTHUMG00000165854 uc001qcs.4 AK223335 NM_001612 "CCDS8460|CCDS8461|CCDS44759|CCDS44761" P26436 "1693291|8288254" MGI:104590 RGD:620153 ACRV1 102525 +HGNC:29567 ACSBG1 acyl-CoA synthetase bubblegum family member 1 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "BGM|FLJ30320|MGC14352|BG1|KIAA0631|hBG1|hsBG" "bubblegum|very long-chain acyl-CoA synthetase|lipidosin" Acyl-CoA synthetase family 40 2005-09-08 2016-10-05 23205 ENSG00000103740 OTTHUMG00000143734 uc002bdh.4 AB014531 NM_015162 CCDS10298 Q96GR2 "9734811|10954726" MGI:2385656 RGD:708557 ACSBG1 614362 +HGNC:24174 ACSBG2 acyl-CoA synthetase bubblegum family member 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "BGR|PRTD-NY3|DKFZp434K1635" bubblegum related protein Acyl-CoA synthetase family 40 2005-09-08 2015-08-26 81616 ENSG00000130377 OTTHUMG00000180754 uc002mef.3 NM_030924 "CCDS12159|CCDS74269|CCDS82282" Q5FVE4 11230166 MGI:3587728 RGD:1588580 ACSBG2 614363 +HGNC:26101 ACSF2 acyl-CoA synthetase family member 2 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "FLJ20920|ACSMW" Acyl-CoA synthetase family 40 2007-10-17 2015-08-26 80221 ENSG00000167107 OTTHUMG00000162128 uc002iqu.4 "AK024573|BC012053" NM_025149 "CCDS11567|CCDS74103|CCDS74104|CCDS74105" Q96CM8 17762044 MGI:2388287 RGD:1562656 ACSF2 610465 +HGNC:27288 ACSF3 acyl-CoA synthetase family member 3 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 malonyl-CoA synthetase Acyl-CoA synthetase family 40 2007-10-17 2015-08-26 197322 ENSG00000176715 OTTHUMG00000138044 uc021tmq.2 AK075499 NM_174917 "CCDS10974|CCDS73926" Q4G176 "17762044|21846720" MGI:2182591 RGD:1586037 ACSF3 614245 289511 +HGNC:3569 ACSL1 acyl-CoA synthetase long-chain family member 1 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "LACS2|LACS|ACS1|LACS1|FACL1" "lignoceroyl-CoA synthase|long-chain fatty-acid-coenzyme A ligase 1" FACL2 fatty-acid-Coenzyme A ligase, long-chain 2 Acyl-CoA synthetase family 40 1991-08-08 2004-02-20 2004-02-19 2015-08-26 2180 ENSG00000151726 OTTHUMG00000160547 uc063biw.1 BC026290 NM_001995 "CCDS3839|CCDS68825|CCDS68826|CCDS75213" P33121 "2341402|1531127" MGI:102797 RGD:2015 ACSL1 152425 6.2.1.3 +HGNC:3570 ACSL3 acyl-CoA synthetase long-chain family member 3 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "ACS3|PRO2194" FACL3 fatty-acid-Coenzyme A ligase, long-chain 3 Acyl-CoA synthetase family 40 1997-04-25 2004-02-20 2004-02-19 2016-10-05 2181 ENSG00000123983 OTTHUMG00000133160 uc002vni.4 D89053 NM_004457 CCDS2455 O95573 MGI:1921455 RGD:70552 ACSL3 602371 +HGNC:3571 ACSL4 acyl-CoA synthetase long-chain family member 4 protein-coding gene gene with protein product Approved Xq23 Xq23 "ACS4|LACS4" "lignoceroyl-CoA synthase| long-chain fatty-acid-Coenzyme A ligase 4" "FACL4|MRX63|MRX68" "fatty-acid-Coenzyme A ligase, long-chain 4|mental retardation, X-linked 63|mental retardation, X-linked 68" "Acyl-CoA synthetase family|X-linked mental retardation" "40|103" 1997-05-09 2004-02-20 2004-02-19 2016-10-05 2182 ENSG00000068366 OTTHUMG00000022190 uc004eoi.3 BC034959 NM_004458 "CCDS14548|CCDS14549" O60488 "9480748|12949969" MGI:1354713 RGD:69401 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ACSL4 ACSL4 300157 117743 +HGNC:16526 ACSL5 acyl-CoA synthetase long-chain family member 5 protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "ACS5|ACS2" "FACL5 for fatty acid coenzyme A ligase 5|long-chain acyl-CoA synthetase 5|long-chain fatty acid coenzyme A ligase 5|fatty-acid-Coenzyme A ligase, long-chain 5" FACL5 fatty-acid-Coenzyme A ligase, long-chain 5 Acyl-CoA synthetase family 40 2001-09-14 2004-02-20 2004-02-19 2015-08-26 51703 ENSG00000197142 OTTHUMG00000019060 uc001kzs.4 AB033899 NM_016234 "CCDS7572|CCDS7573" Q9ULC5 11127823 MGI:1919129 RGD:69402 ACSL5 605677 +HGNC:16496 ACSL6 acyl-CoA synthetase long-chain family member 6 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "KIAA0837|ACS2|LACS5|LACS2" FACL6 fatty-acid-Coenzyme A ligase, long-chain 6 Acyl-CoA synthetase family 40 2001-09-14 2004-02-20 2004-02-19 2016-10-05 23305 ENSG00000164398 OTTHUMG00000150692 uc063gss.1 AB020644 NM_015256 "CCDS34228|CCDS34229|CCDS56381|CCDS56382|CCDS56383" Q9UKU0 "10502316|10548543" MGI:894291 RGD:69403 ACSL6 604443 +HGNC:18049 ACSM1 acyl-CoA synthetase medium-chain family member 1 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 MACS1 BUCS1 butyryl Coenzyme A synthetase 1 Acyl-CoA synthetase family 40 2002-03-22 2005-09-08 2005-09-08 2015-08-26 116285 ENSG00000166743 OTTHUMG00000131550 uc010bwg.2 AB059429 NM_052956 CCDS10587 Q08AH1 "11470804|12654705" MGI:2152200 RGD:1306813 ACSM1 614357 6.2.1.2 +HGNC:32017 ACSM2A acyl-CoA synthetase medium-chain family member 2A protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "A-923A4.1|MGC150530" ACSM2 acyl-CoA synthetase medium-chain family member 2 Acyl-CoA synthetase family 40 2007-06-20 2007-06-20 2007-06-20 2015-08-26 123876 ENSG00000183747 OTTHUMG00000177401 uc002dhg.5 "AK091878|AK096039" NM_001010845 "CCDS32401|CCDS76838" Q08AH3 MGI:2385289 RGD:708383 ACSM2A 614358 +HGNC:30931 ACSM2B acyl-CoA synthetase medium-chain family member 2B protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "HXMA|HYST1046" xenobiotic/medium chain fatty acid:CoA ligase ACSM2 acyl-CoA synthetase medium-chain family member 2 Acyl-CoA synthetase family 40 2005-09-08 2007-06-20 2007-06-20 2015-08-28 348158 ENSG00000066813 OTTHUMG00000131555 uc002dhk.5 AY160217 NM_182617 CCDS10586 Q68CK6 12616642 MGI:2385289 ACSM2B 614359 +HGNC:10522 ACSM3 acyl-CoA synthetase medium-chain family member 3 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 SA SAH "SA (rat hypertension-associated) homolog|SA hypertension-associated homolog (rat)" Acyl-CoA synthetase family 40 1994-08-23 2005-09-08 2005-09-08 2016-10-05 6296 ENSG00000005187 OTTHUMG00000131552 uc002dhr.4 D16350 NM_005622 "CCDS10589|CCDS45435" Q53FZ2 "7843754|7907320|11470804" MGI:99538 RGD:62086 ACSM3 145505 +HGNC:32016 ACSM4 acyl-CoA synthetase medium-chain family member 4 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 similar to olfactory specific medium-chain acyl CoA synthetase Acyl-CoA synthetase family 40 2007-10-17 2015-08-26 341392 ENSG00000215009 OTTHUMG00000154975 uc001qsx.2 NM_001080454 CCDS44825 P0C7M7 17762044 MGI:2681844 RGD:727928 ACSM4 614360 +HGNC:26060 ACSM5 acyl-CoA synthetase medium-chain family member 5 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 FLJ20581 Acyl-CoA synthetase family 40 2007-10-17 2015-08-26 54988 ENSG00000183549 OTTHUMG00000131551 uc002dhe.4 NM_017888 "CCDS10585|CCDS81954" Q6NUN0 17762044 MGI:2444086 RGD:1309578 ACSM5 614361 +HGNC:51295 ACSM5P1 acyl-CoA synthetase medium-chain family member 5 pseudogene 1 pseudogene pseudogene Approved 16p12.3 16p12.3 2014-09-24 2014-09-24 100421779 ENSG00000260762 OTTHUMG00000177228 NG_026352 +HGNC:31665 ACSM6 acyl-CoA synthetase medium-chain family member 6 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 bA310E22.3 C10orf129 chromosome 10 open reading frame 129 2004-05-27 2014-05-29 2014-05-29 2015-08-28 142827 ENSG00000173124 OTTHUMG00000018808 NM_207321 CCDS7440 Q6P461 23884467 +HGNC:16091 ACSS1 acyl-CoA synthetase short-chain family member 1 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "dJ568C11.3|AceCS2L|MGC33843" ACAS2L acetyl-Coenzyme A synthetase 2 (AMP forming)-like Acyl-CoA synthetase family 40 2001-07-17 2005-09-08 2005-09-08 2015-08-26 84532 ENSG00000154930 OTTHUMG00000032112 uc061vwl.1 NM_032501 "CCDS13167|CCDS58764|CCDS58765" Q9NUB1 MGI:1915988 RGD:1306246 ACSS1 614355 6.2.1.1 +HGNC:15814 ACSS2 acyl-CoA synthetase short-chain family member 2 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "ACS|ACSA|AceCS|dJ1161H23.1" ACAS2 acetyl-Coenzyme A synthetase 2 (ADP forming) Acyl-CoA synthetase family 40 2001-09-17 2005-09-08 2005-09-08 2016-04-25 55902 ENSG00000131069 OTTHUMG00000032317 uc002xbd.3 AF263614 NM_018677 "CCDS13243|CCDS42868" Q9NR19 10843999 MGI:1890410 RGD:1305489 ACSS2 605832 6.2.1.1 +HGNC:24723 ACSS3 acyl-CoA synthetase short-chain family member 3 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 FLJ21963 Acyl-CoA synthetase family 40 2007-10-17 2015-08-26 79611 ENSG00000111058 OTTHUMG00000170179 uc001szl.2 NM_024560 "CCDS9022|CCDS81716" Q9H6R3 17762044 MGI:2685720 RGD:1307051 ACSS3 614356 +HGNC:129 ACTA1 actin, alpha 1, skeletal muscle protein-coding gene gene with protein product Approved 1q42.13 01q42.13 NEM3 nemaline myopathy type 3 ACTA Actins 929 1986-01-01 2016-10-12 58 ENSG00000143632 OTTHUMG00000038006 uc001htm.4 J00068 NM_001100 CCDS1578 P68133 "10072583|6865942" MGI:87902 RGD:2025 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=ACTA1|LRG_429|http://www.lrg-sequence.org/LRG/LRG_429" ACTA1 102610 117750 +HGNC:130 ACTA2 actin, alpha 2, smooth muscle, aorta protein-coding gene gene with protein product Approved 10q23.31 10q23.31 ACTSA Actins 929 1989-12-07 2016-10-12 59 ENSG00000107796 OTTHUMG00000018700 uc001kfq.4 X13839 NM_001613 CCDS7392 P62736 2398629 MGI:87909 RGD:621676 LRG_781|http://www.lrg-sequence.org/LRG/LRG_781 ACTA2 102620 138831 +HGNC:45169 ACTA2-AS1 ACTA2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.31 10q23.31 "uc001kfo.1|ZXF1" 2013-03-01 2014-04-14 100132116 ENSG00000180139 OTTHUMG00000018703 uc001kfo.2 "AK093340|AX748062" NR_125373 24721325 +HGNC:132 ACTB actin beta protein-coding gene gene with protein product Approved 7p22.1 07p22.1 Actins 929 1986-01-01 2016-06-09 2016-10-12 60 ENSG00000075624 OTTHUMG00000023268 uc003sot.5 M28424 NM_001101 CCDS5341 P60709 1505215 MGI:87904 RGD:628837 LRG_132|http://www.lrg-sequence.org/LRG/LRG_132 ACTB 102630 159893 +HGNC:17780 ACTBL2 actin, beta like 2 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 DKFZp686D0972 actin, beta-like 2 2005-04-08 2016-06-08 2016-06-08 345651 ENSG00000169067 OTTHUMG00000162330 uc003jrm.3 NM_001017992 CCDS34163 Q562R1 MGI:2444552 RGD:1309504 ACTBL2 614835 +HGNC:134 ACTBP1 actin, beta pseudogene 1 pseudogene pseudogene Approved Xp11.3 Xp11.3 1986-01-01 2014-11-19 643309 ENSG00000229145 OTTHUMG00000021415 NG_022596 PGOHUM00000241261 +HGNC:135 ACTBP2 actin, beta pseudogene 2 pseudogene pseudogene Approved 5q14.1 05q14.1 1986-01-01 2014-11-19 62 ENSG00000213763 OTTHUMG00000162641 NG_003019 3837182 PGOHUM00000235667 +HGNC:136 ACTBP3 actin, beta pseudogene 3 pseudogene pseudogene Approved 18q21.33 18q21.33 1986-01-01 2014-11-19 63 NG_032175 3837182 +HGNC:137 ACTBP4 actin, beta pseudogene 4 pseudogene pseudogene Approved 5q23.3 05q23.3 1986-01-01 2014-11-19 64 NG_003020 3837182 PGOHUM00000235394 +HGNC:138 ACTBP5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-04-23 +HGNC:139 ACTBP6 actin, beta pseudogene 6 pseudogene pseudogene Approved 8q21.2 08q21.2 1988-08-16 2015-01-19 66 ENSG00000203413 OTTHUMG00000164632 NG_008793 PGOHUM00000303609 +HGNC:140 ACTBP7 actin, beta pseudogene 7 pseudogene pseudogene Approved 15q15.3 15q15.3 1995-12-13 2015-01-19 67 ENSG00000185607 OTTHUMG00000060473 V00479 NG_002724 "6296793|6571702" PGOHUM00000292935 +HGNC:141 ACTBP8 actin, beta pseudogene 8 pseudogene pseudogene Approved 6q15 06q15 ACTBP2 1995-12-13 2014-11-19 68 ENSG00000220267 OTTHUMG00000015186 V00481 NG_000840 6296793 PGOHUM00000243288 +HGNC:142 ACTBP9 actin, beta pseudogene 9 pseudogene pseudogene Approved 18q21.33 18q21.33 1995-12-13 2015-01-19 69 ENSG00000266920 OTTHUMG00000180164 D50604 NG_003162 8941379 PGOHUM00000235085 +HGNC:31819 ACTBP10 actin, beta pseudogene 10 pseudogene pseudogene Approved 14q11.2 14q11.2 2004-09-07 2014-11-19 446207 NG_032756 +HGNC:33971 ACTBP11 actin, beta pseudogene 11 pseudogene pseudogene Approved 1q41 01q41 2008-01-31 2015-01-19 644220 ENSG00000188460 OTTHUMG00000037470 NG_007577 PGOHUM00000296067 +HGNC:150 ACTBP12 actin, beta pseudogene 12 pseudogene pseudogene Approved 1p22.1 01p22.1 ACTGP5 actin, gamma pseudogene 5 1995-12-18 2009-12-16 2009-12-16 2015-01-19 100462767 ENSG00000233125 OTTHUMG00000010284 NG_026958 PGOHUM00000295746 +HGNC:44626 ACTBP13 actin, beta pseudogene 13 pseudogene pseudogene Approved 3p21.31 03p21.31 2012-11-21 2012-11-21 389120 ENSG00000234667 OTTHUMG00000154689 NG_028183 PGOHUM00000237624 +HGNC:45086 ACTBP14 actin, beta pseudogene 14 pseudogene pseudogene Approved 10q22.1 10q22.1 2013-02-08 2015-01-19 389976 ENSG00000229001 OTTHUMG00000018365 NG_022182 PGOHUM00000290195 +HGNC:143 ACTC1 actin, alpha, cardiac muscle 1 protein-coding gene gene with protein product Approved 15q14 15q14 CMD1R ACTC actin, alpha, cardiac muscle Actins 929 1986-01-01 2006-08-24 2006-08-24 2016-10-12 70 ENSG00000159251 OTTHUMG00000129675 uc001ziu.2 BC009978 NM_005159 CCDS10041 P68032 1639426 MGI:87905 RGD:2026 LRG_388|http://www.lrg-sequence.org/LRG/LRG_388 ACTC1 102540 117753 +HGNC:144 ACTG1 actin gamma 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "ACTG|DFNA20|DFNA26" "deafness, autosomal dominant 20|deafness, autosomal dominant 26" Actins 929 1988-06-27 2015-01-19 2016-02-26 71 ENSG00000184009 OTTHUMG00000177955 uc002kal.3 NM_001614 CCDS11782 P63261 14684684 MGI:87906 RGD:1304556 ACTG1 102560 166815 +HGNC:146 ACTG1P1 actin gamma 1 pseudogene 1 pseudogene pseudogene Approved 3q23 03q23 "ACTGP1|ACT1GP1" actin, gamma pseudogene 1 1988-08-16 2009-12-11 2015-01-19 2015-01-19 73 ENSG00000178631 OTTHUMG00000150294 D50658 NG_001068 PGOHUM00000299613 +HGNC:147 ACTG1P2 actin gamma 1 pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 "ACTL2|ACTGP2" actin, gamma pseudogene 2 1988-08-16 2009-12-14 2015-01-19 2015-01-19 74 ENSG00000229129 OTTHUMG00000041662 NG_004636 PGOHUM00000305494 +HGNC:148 ACTG1P3 actin gamma 1 pseudogene 3 pseudogene pseudogene Approved 20p13 20p13 ACTGP3 actin, gamma pseudogene 3 1995-09-20 2009-12-14 2015-01-19 2015-01-19 75 ENSG00000215388 OTTHUMG00000031654 AF196978 NG_000842 8941379 PGOHUM00000297037 +HGNC:149 ACTG1P4 actin gamma 1 pseudogene 4 pseudogene pseudogene Approved 1p21.1 01p21.1 ACTGP4 actin, gamma pseudogene 4 1995-12-18 2009-12-15 2015-01-19 2016-10-05 648740 ENSG00000236085 OTTHUMG00000011022 NR_024438 1692956 PGOHUM00000296428 +HGNC:151 ACTG1P6 actin gamma 1 pseudogene 6 pseudogene pseudogene Approved 1p21 01p21 ACTGP6 actin, gamma pseudogene 6 1995-12-18 2009-12-16 2015-01-19 2015-01-19 78 1692956 +HGNC:152 ACTG1P7 actin gamma 1 pseudogene 7 pseudogene pseudogene Approved 1p21 01p21 ACTGP7 actin, gamma pseudogene 7 1995-12-18 2009-12-16 2015-01-19 2015-01-19 79 1692956 +HGNC:153 ACTG1P8 actin gamma 1 pseudogene 8 pseudogene pseudogene Approved 1p21 01p21 ACTGP8 actin, gamma pseudogene 8 1995-12-18 2009-12-16 2015-01-19 2015-01-19 80 1692956 +HGNC:154 ACTG1P9 actin gamma 1 pseudogene 9 pseudogene pseudogene Approved 6p12.3 06p12.3 ACTGP9 actin, gamma pseudogene 9 1996-07-15 2009-12-15 2015-01-19 2015-01-19 82 ENSG00000229349 OTTHUMG00000014780 D50659 NG_001069 PGOHUM00000301804 +HGNC:155 ACTG1P10 actin gamma 1 pseudogene 10 pseudogene pseudogene Approved Xp11.22 Xp11.22 "ACTL1|ACTGP10" "actin-like 1|actin, gamma pseudogene 10" 1986-01-01 2009-12-15 2015-01-19 2015-01-19 83 ENSG00000231340 OTTHUMG00000021601 AL139396 NG_003039 6592095 PGOHUM00000304636 +HGNC:37651 ACTG1P11 actin gamma 1 pseudogene 11 pseudogene pseudogene Approved Yq11.222 Yq11.222 2009-12-16 2015-01-19 2015-01-19 414754 ENSG00000229465 OTTHUMG00000041957 NG_004636 PGOHUM00000305682 +HGNC:44496 ACTG1P12 actin gamma 1 pseudogene 12 pseudogene pseudogene Approved 3p25.2 03p25.2 2012-11-12 2015-01-19 2015-01-19 100418921 ENSG00000226642 OTTHUMG00000155334 NG_025675 PGOHUM00000299346 +HGNC:49058 ACTG1P13 actin gamma 1 pseudogene 13 pseudogene pseudogene Approved 3q12.1 03q12.1 2013-08-19 2015-01-19 2015-03-10 100418920 ENSG00000241305 OTTHUMG00000159398 NG_025603 PGOHUM00000299101 +HGNC:49751 ACTG1P14 actin gamma 1 pseudogene 14 pseudogene pseudogene Approved 9p24.1 09p24.1 2014-02-13 2015-01-19 2015-01-19 100418910 ENSG00000230581 OTTHUMG00000019534 NG_023870 PGOHUM00000304104 +HGNC:51495 ACTG1P15 actin gamma 1 pseudogene 15 pseudogene pseudogene Approved 15q14 15q14 2015-01-19 2015-01-19 100418951 ENSG00000259904 OTTHUMG00000173385 NG_025296 PGOHUM00000292902 +HGNC:51496 ACTG1P16 actin gamma 1 pseudogene 16 pseudogene pseudogene Approved 16q12.1 16q12.1 2015-01-19 2015-01-19 100418960 ENSG00000260298 OTTHUMG00000173450 NG_026370 PGOHUM00000293608 +HGNC:51497 ACTG1P17 actin gamma 1 pseudogene 17 pseudogene pseudogene Approved 15q25.2 15q25.2 2015-01-19 2015-01-22 283693 ENSG00000259315 OTTHUMG00000172407 NR_036446 PGOHUM00000293043 +HGNC:51498 ACTG1P18 actin gamma 1 pseudogene 18 pseudogene pseudogene Approved 6q16.3 06q16.3 2015-01-19 2015-01-19 100418924 ENSG00000218475 OTTHUMG00000015280 NG_025850 PGOHUM00000301490 +HGNC:51499 ACTG1P19 actin gamma 1 pseudogene 19 pseudogene pseudogene Approved 9q31.1 09q31.1 2015-01-19 2015-01-19 644160 ENSG00000237999 OTTHUMG00000020369 NG_021670 PGOHUM00000304420 +HGNC:51500 ACTG1P20 actin gamma 1 pseudogene 20 pseudogene pseudogene Approved 1p36.11 01p36.11 2015-01-19 2015-01-19 644961 ENSG00000241547 OTTHUMG00000004411 NR_033926 PGOHUM00000296261 +HGNC:51501 ACTG1P21 actin gamma 1 pseudogene 21 pseudogene pseudogene Approved 1p31.1 01p31.1 2015-01-19 2015-01-19 100131291 ENSG00000232672 OTTHUMG00000039957 NG_022723 PGOHUM00000295723 +HGNC:51502 ACTG1P22 actin gamma 1 pseudogene 22 pseudogene pseudogene Approved 2p16.1 02p16.1 2015-01-19 2015-01-19 100131953 ENSG00000271615 OTTHUMG00000184337 NG_021565 PGOHUM00000298443 +HGNC:51503 ACTG1P23 actin gamma 1 pseudogene 23 pseudogene pseudogene Approved 3q26.31 03q26.31 2015-01-19 2015-01-19 442097 ENSG00000230362 OTTHUMG00000157141 NG_022227 PGOHUM00000299277 +HGNC:49661 ACTG1P24 actin gamma 1 pseudogene 24 pseudogene pseudogene Approved 17p11.2 17p11.2 POTENP POTE ankyrin domain family, member N, pseudogene 2014-01-30 2015-01-26 2015-01-26 2015-01-26 441783 ENSG00000226359 OTTHUMG00000059280 NG_022456 PGOHUM00000237244 +HGNC:145 ACTG2 actin, gamma 2, smooth muscle, enteric protein-coding gene gene with protein product Approved 2p13.1 02p13.1 ACTSG "ACTL3|ACTA3" Actins 929 1989-12-07 2015-08-26 72 ENSG00000163017 OTTHUMG00000129813 uc002sjw.4 NM_001615 "CCDS1930|CCDS56124" P63267 "1710027|1673027" MGI:104589 RGD:2027 ACTG2 102545 320793 +HGNC:158 ACTL4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-13 +HGNC:159 ACTL5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-05-19 +HGNC:24124 ACTL6A actin like 6A protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "Actl6|BAF53A|Arp4|Baf53a|INO80K" "BAF complex 53 kDa subunit|BRG1-associated factor|actin-related protein 4|INO80 complex subunit K" "INO80 complex | SRCAP complex" "595|1329" 2004-07-12 2015-11-17 2015-11-17 86 ENSG00000136518 OTTHUMG00000157782 uc003fjw.4 AK098691 NM_004301 "CCDS3231|CCDS43174" O96019 "9845365|10380635" MGI:1861453 RGD:1307747 ACTL6A 604958 +HGNC:160 ACTL6B actin like 6B protein-coding gene gene with protein product Approved 7q22.1 07q22.1 BAF53B ACTL6 actin-like 6 1998-06-01 2004-07-14 2015-11-17 2016-10-05 51412 ENSG00000077080 OTTHUMG00000159661 uc003uvy.4 AB015906 NM_016188 CCDS5702 O94805 9799793 MGI:1933548 RGD:1307763 ACTL6B 612458 +HGNC:161 ACTL7A actin like 7A protein-coding gene gene with protein product Approved 9q31.3 09q31.3 1999-07-14 2015-11-17 2016-10-05 10881 ENSG00000187003 OTTHUMG00000020461 uc004bdj.3 BC014610 NM_006687 CCDS6772 Q9Y615 10373328 MGI:1343051 RGD:1304697 ACTL7A 604303 +HGNC:162 ACTL7B actin like 7B protein-coding gene gene with protein product Approved 9q31.3 09q31.3 Tact1 1999-07-14 2015-11-17 2016-10-05 10880 ENSG00000148156 OTTHUMG00000020462 uc004bdi.4 BC033789 NM_006686 CCDS6771 Q9Y614 "10373328|12907721" MGI:1343053 RGD:1305655 ACTL7B 604304 +HGNC:24018 ACTL8 actin like 8 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 CT57 cancer/testis antigen 57 2005-05-19 2015-11-17 2015-11-17 81569 ENSG00000117148 OTTHUMG00000002512 uc001bat.3 AK057339 NM_030812 CCDS183 Q9H568 ACTL8 +HGNC:28494 ACTL9 actin like 9 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC33407 2009-05-15 2015-11-17 2015-11-17 284382 ENSG00000181786 OTTHUMG00000182194 uc032hly.2 NM_178525 CCDS12207 Q8TC94 MGI:1916731 RGD:1359476 ACTL9 +HGNC:16127 ACTL10 actin like 10 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 C20orf134 chromosome 20 open reading frame 134 2001-07-17 2011-11-24 2015-11-17 2015-11-17 170487 ENSG00000182584 OTTHUMG00000032262 uc002wzt.3 AL121906 NM_001024675 CCDS33463 Q5JWF8 MGI:1917612 RGD:6491130 +HGNC:163 ACTN1 actinin alpha 1 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 Actinins 1112 1990-08-21 2016-01-18 2016-10-12 87 ENSG00000072110 OTTHUMG00000171386 uc001xkl.4 M95178 NM_001102 "CCDS9792|CCDS45129|CCDS45130" P12814 2349951 MGI:2137706 RGD:70907 LRG_886|http://www.lrg-sequence.org/LRG/LRG_886 ACTN1 102575 330666 +HGNC:20131 ACTN1-AS1 ACTN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q24.1 14q24.1 C14orf84 "chromosome 14 open reading frame 84|ACTN1 antisense RNA 1 (non-protein coding)" 2002-12-18 2011-11-30 2012-08-15 2012-10-12 161159 ENSG00000259062 OTTHUMG00000171698 uc031qpf.1 "DB029126|AI147349" NR_073422 +HGNC:164 ACTN2 actinin alpha 2 protein-coding gene gene with protein product Approved 1q43 01q43 Actinins 1112 1991-07-16 2016-01-18 2016-10-12 88 ENSG00000077522 OTTHUMG00000040059 uc001hyf.4 BC047901 NM_001103 "CCDS1613|CCDS60455|CCDS73053" P35609 1339456 MGI:109192 RGD:1308097 LRG_436|http://www.lrg-sequence.org/LRG/LRG_436 ACTN2 102573 159192 +HGNC:165 ACTN3 actinin alpha 3 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q13.2 11q13.2 actinin, alpha 3 Actinins 1112 1991-07-16 2016-01-18 2016-01-18 89 ENSG00000248746 OTTHUMG00000160815 uc021qlz.4 M86407 NM_001104 CCDS76439 Q08043 1339456 MGI:99678 RGD:621792 ACTN3 102574 +HGNC:166 ACTN4 actinin alpha 4 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FSGS1 focal segmental glomerulosclerosis 1 Actinins 1112 1992-03-26 2016-01-18 2016-10-05 81 ENSG00000130402 OTTHUMG00000137382 uc002oja.3 D89980 NM_004924 CCDS12518 O43707 "9461087|10700177" MGI:1890773 RGD:61816 ACTN4 604638 117757 +HGNC:44028 ACTN4P1 actinin alpha 4 pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 2012-05-28 2016-01-18 2016-01-18 344978 ENSG00000213493 OTTHUMG00000161135 NG_022074 PGOHUM00000246045 +HGNC:44032 ACTN4P2 actinin alpha 4 pseudogene 2 pseudogene pseudogene Approved 1p34.3 01p34.3 2012-05-28 2016-01-18 2016-01-18 391026 ENSG00000214141 OTTHUMG00000004315 PGOHUM00000244676 +HGNC:51621 ACTP1 actin family pseudogene 1 pseudogene pseudogene Approved 2q12.3 02q12.3 2015-03-26 2015-03-26 106480335 ENSG00000229890 OTTHUMG00000153365 NG_044542 PGOHUM00000298612 +HGNC:167 ACTR1A ARP1 actin-related protein 1 homolog A, centractin alpha protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "ARP1|Arp1A" ARP1 (actin-related protein 1, yeast) homolog A (centractin alpha) 1999-05-17 2016-04-14 2016-10-05 10121 ENSG00000138107 OTTHUMG00000018956 uc001kvv.4 X82206 NM_005736 CCDS7536 P61163 1528266 MGI:1858964 RGD:1307025 ACTR1A 605143 +HGNC:168 ACTR1B ARP1 actin-related protein 1 homolog B, centractin beta protein-coding gene gene with protein product Approved 2q11.2 02q11.2 Arp1B CTRN2 ARP1 (actin-related protein 1, yeast) homolog B (centractin beta) 1999-05-17 2016-04-14 2016-04-14 10120 ENSG00000115073 OTTHUMG00000130549 uc002syb.3 X82207 NM_005735 CCDS2033 P42025 "7696711|10343100" MGI:1917446 RGD:1307380 ACTR1B 605144 +HGNC:169 ACTR2 ARP2 actin related protein 2 homolog protein-coding gene gene with protein product Approved 2p14 02p14 ARP2 "ARP2 (actin-related protein 2, yeast) homolog|ARP2 actin-related protein 2 homolog (yeast)" Actin related protein 2/3 complex 39 1999-05-17 2016-07-13 2016-07-13 10097 ENSG00000138071 OTTHUMG00000129540 uc002sdq.4 AF006082 NM_001005386 "CCDS1881|CCDS46307" P61160 9230079 MGI:1913963 RGD:1310826 ACTR2 604221 +HGNC:170 ACTR3 ARP3 actin related protein 3 homolog protein-coding gene gene with protein product Approved 2q14.1 02q14.1 ARP3 "ARP3 (actin-related protein 3, yeast) homolog|ARP3 actin-related protein 3 homolog (yeast)" Actin related protein 2/3 complex 39 1999-05-17 2016-07-13 2016-07-13 10096 ENSG00000115091 OTTHUMG00000153497 uc002tkx.3 AF006083 NM_005721 "CCDS33277|CCDS63000" P61158 9230079 MGI:1921367 RGD:71024 ACTR3 604222 +HGNC:17256 ACTR3B ARP3 actin related protein 3 homolog B protein-coding gene gene with protein product Approved 7q36.1-q36.2 07q36.1-q36.2 "ARP11|ARP3beta" ARP3 actin-related protein 3 homolog B (yeast) 2005-05-19 2016-07-13 2016-10-11 57180 ENSG00000133627 OTTHUMG00000151463 uc003wle.3 NM_020445 "CCDS5934|CCDS34782" Q9P1U1 10806390 MGI:2661120 RGD:1565759 ACTR3B +HGNC:37724 ACTR3BP1 ACTR3B pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 1 2010-02-05 2013-09-12 2015-01-19 643050 ENSG00000270242 OTTHUMG00000185098 NG_005799 PGOHUM00000233948 +HGNC:38677 ACTR3BP2 ACTR3B pseudogene 2 pseudogene pseudogene Approved 2p11.1 02p11.1 FKSG73 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 2 2010-07-20 2013-09-12 2014-11-19 440888 ENSG00000226481 OTTHUMG00000155085 NR_027714 PGOHUM00000240774 +HGNC:38678 ACTR3BP3 ACTR3B pseudogene 3 pseudogene pseudogene Approved 16p11.2 16p11.2 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 3 2010-07-20 2013-09-12 2015-01-19 647156 ENSG00000260327 OTTHUMG00000176495 NG_005800 PGOHUM00000248822 +HGNC:38681 ACTR3BP4 ACTR3B pseudogene 4 pseudogene pseudogene Approved 4q24 04q24 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 4 2010-07-20 2013-09-12 2014-11-19 777774 ENSG00000249283 OTTHUMG00000161015 NG_005802 PGOHUM00000246015 +HGNC:38682 ACTR3BP5 ACTR3B pseudogene 5 pseudogene pseudogene Approved 10p11.1 10p11.1 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 5 2010-07-20 2013-09-12 2014-11-19 399746 ENSG00000227264 OTTHUMG00000018000 NR_045000 PGOHUM00000238743 +HGNC:38683 ACTR3BP6 ACTR3B pseudogene 6 pseudogene pseudogene Approved 22q11.1 22q11.1 ARP3 actin-related protein 3 homolog B (yeast) pseudogene 6 2010-07-20 2013-09-12 2014-11-19 644773 ENSG00000226444 OTTHUMG00000140398 NG_005801 PGOHUM00000246380 +HGNC:37282 ACTR3C ARP3 actin-related protein 3 homolog C protein-coding gene gene with protein product Approved 7q36.1 07q36.1 ARP11 ARP3 actin-related protein 3 homolog C (yeast) 2009-09-23 2016-04-14 2016-04-14 653857 ENSG00000106526 OTTHUMG00000158323 uc003wgu.3 XM_017012548 CCDS47744 Q9C0K3 "11162478|14651955" +HGNC:31820 ACTR3P1 ACTR3 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 ARP3 actin-related protein 3 homolog (yeast) pseudogene 1 2004-09-07 2013-09-12 2014-11-19 100288580 NG_023029 PGOHUM00000247736 +HGNC:38676 ACTR3P2 ACTR3 pseudogene 2 pseudogene pseudogene Approved Xq13.1 Xq13.1 ARP3 actin-related protein 3 homolog (yeast) pseudogene 2 2010-07-20 2013-09-12 2014-11-19 100129013 ENSG00000232267 OTTHUMG00000021749 NG_022669 PGOHUM00000241828 +HGNC:38679 ACTR3P3 ACTR3 pseudogene 3 pseudogene pseudogene Approved 3q12.2 03q12.2 ARP3 actin-related protein 3 homolog (yeast) pseudogene 3 2010-07-20 2013-09-12 2014-11-19 100128020 ENSG00000242573 OTTHUMG00000159092 NG_022261 PGOHUM00000238117 +HGNC:14671 ACTR5 ARP5 actin-related protein 5 homolog protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "FLJ12785|Arp5|INO80M" INO80 complex subunit M "ARP5 (actin-related protein 5, yeast) homolog|ARP5 actin-related protein 5 homolog (yeast)" INO80 complex 595 2001-06-11 2016-04-05 2016-10-05 79913 ENSG00000101442 OTTHUMG00000032456 uc002xjd.3 AK022847 NM_024855 CCDS13308 Q9H9F9 16230350 MGI:1924748 RGD:1307958 ACTR5 +HGNC:24025 ACTR6 ARP6 actin-related protein 6 homolog protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "ARP6|FLJ13433" ARP6 actin-related protein 6 homolog (yeast) SRCAP complex 1329 2004-03-23 2016-04-14 2016-04-14 64431 ENSG00000075089 OTTHUMG00000170245 uc001thb.3 AF212251 NM_022496 CCDS9074 Q9GZN1 11368909 MGI:1914269 RGD:1304609 ACTR6 +HGNC:44210 ACTR6P1 ACTR6 pseudogene 1 pseudogene pseudogene Approved 4q25 04q25 ARP6 actin-related protein 6 homolog (yeast) pseudogene 1 2012-07-09 2013-09-12 2013-09-12 100421495 ENSG00000248915 OTTHUMG00000160993 NG_025147 PGOHUM00000261381 +HGNC:14672 ACTR8 ARP8 actin-related protein 8 homolog protein-coding gene gene with protein product Approved 3p21.1 03p21.1 INO80N INO80 complex subunit N ARP8 (actin-related protein 8, yeast) homolog INO80 complex 595 2001-06-11 2016-04-14 2016-10-05 93973 ENSG00000113812 OTTHUMG00000158279 uc003dhd.4 NM_022899 CCDS2875 Q9H981 "18163988|16230350" MGI:1860775 RGD:1311878 ACTR8 +HGNC:17372 ACTR10 actin-related protein 10 homolog protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "HARP11|ACTR11|Arp11|Arp10" actin-related protein 10 homolog (S. cerevisiae) 2003-01-24 2016-04-14 2016-04-14 55860 ENSG00000131966 OTTHUMG00000171049 uc001xdf.4 AF220190 XM_011536962 CCDS32090 Q9NZ32 12857853 MGI:1891654 RGD:1306515 ACTR10 +HGNC:24027 ACTRT1 actin related protein T1 protein-coding gene gene with protein product Approved Xq25 Xq25 "AIP1|KIAA0705|ARIP1|Arp-T1" 2005-11-22 2016-03-15 2016-03-15 139741 ENSG00000123165 OTTHUMG00000022359 uc004eum.4 AF440739 NM_138289 CCDS14611 Q8TDG2 12243744 MGI:1920610 RGD:1359559 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ACTRT1 ACTRT1 300487 +HGNC:24026 ACTRT2 actin related protein T2 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "Arp-T2|ARPM2|FLJ25424" 2005-11-22 2015-12-01 2016-10-05 140625 ENSG00000169717 OTTHUMG00000000562 uc001ajz.4 "AF440740|AB057364" NM_080431 CCDS45 Q8TDY3 "11750065|12243744" MGI:1920603 RGD:1359657 ACTRT2 608535 +HGNC:24022 ACTRT3 actin related protein T3 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 ARPM1 actin related protein M1 2012-04-10 2016-03-15 2016-03-15 84517 ENSG00000184378 OTTHUMG00000184025 uc003ffs.3 AK055346 NM_032487 CCDS3206 Q9BYD9 "11750065|18692047" MGI:1923902 RGD:1561457 608534 +HGNC:171 ACVR1 activin A receptor type 1 protein-coding gene gene with protein product Approved 2q24.1 02q24.1 "SKR1|ALK2|ACVR1A" ACVRLK2 activin A receptor, type I Type 1 receptor serine/threonine kinases 345 1994-01-10 2016-03-07 2016-10-05 90 ENSG00000115170 OTTHUMG00000131967 uc010fog.3 NM_001105 CCDS2206 Q04771 8397373 MGI:87911 RGD:620200 ACVR1 102576 117759 objectId:1785 +HGNC:172 ACVR1B activin A receptor type 1B protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "ALK4|SKR2|ActRIB" ACVRLK4 activin A receptor, type IB Type 1 receptor serine/threonine kinases 345 1994-12-12 2016-03-07 2016-10-05 91 ENSG00000135503 OTTHUMG00000167920 uc001rzn.4 NM_020328 "CCDS44893|CCDS44894|CCDS8816" P36896 8397373 MGI:1338944 RGD:735207 ACVR1B 601300 objectId:1787 +HGNC:18123 ACVR1C activin A receptor type 1C protein-coding gene gene with protein product Approved 2q24.1 02q24.1 "ALK7|ACVRLK7" activin A receptor, type IC Type 1 receptor serine/threonine kinases 345 2003-07-21 2016-03-07 2016-10-05 130399 ENSG00000123612 OTTHUMG00000131964 uc002tzk.5 BC022530 NM_145259 "CCDS2205|CCDS46432|CCDS46433|CCDS46434" Q8NER5 MGI:2661081 RGD:621789 ACVR1C 608981 objectId:1790 +HGNC:173 ACVR2A activin A receptor type 2A protein-coding gene gene with protein product Approved 2q22.3-q23.1 02q22.3-q23.1 ACTRII ACVR2 "activin A receptor, type II|activin A receptor, type IIA" Type 2 receptor serine/threonine kinases 346 1993-09-17 2005-05-10 2016-03-07 2016-10-11 92 ENSG00000121989 OTTHUMG00000150603 uc002twh.5 NM_001616 "CCDS33301|CCDS63030" P27037 "1314589|10702675" MGI:102806 RGD:70911 ACVR2A 102581 objectId:1791 +HGNC:174 ACVR2B activin A receptor type 2B protein-coding gene gene with protein product Approved 3p22.2 03p22.2 ActR-IIB activin A receptor, type IIB Type 2 receptor serine/threonine kinases 346 1997-03-19 2016-03-07 2016-10-05 93 ENSG00000114739 OTTHUMG00000131291 uc003cif.4 X77533 NM_001106 CCDS2679 Q13705 "8161782|9621519" MGI:87912 RGD:2028 ACVR2B 602730 159918 objectId:1792 +HGNC:44161 ACVR2B-AS1 ACVR2B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.2 03p22.2 ACVR2B antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100128640 ENSG00000229589 OTTHUMG00000156031 uc003cie.2 AK025619 NR_028389 +HGNC:175 ACVRL1 activin A receptor like type 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HHT2|ALK1|HHT" "ACVRLK1|ORW2" "activin A receptor type II-like 1|activin A receptor type IL" Type 1 receptor serine/threonine kinases 345 1994-12-12 2016-03-07 2016-10-12 94 ENSG00000139567 OTTHUMG00000169507 uc001rzj.4 L17075 NM_000020 CCDS31804 P37023 "8397373|8640225|22718755" MGI:1338946 RGD:2029 "Hereditary Hemorrhagic Telangiectasia (HHT) Mutation Database|http://www.hhtmutation.org/|LRG_543|http://www.lrg-sequence.org/LRG/LRG_543" ACVRL1 601284 117764 objectId:1784 2.7.11.30 +HGNC:177 ACY1 aminoacylase 1 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 1986-01-01 2014-11-19 95 ENSG00000243989 OTTHUMG00000157815 uc003dcp.4 L07548 NM_000666 "CCDS2844|CCDS56261|CCDS56262|CCDS56263" Q03154 "1707030|6948533" MGI:87913 ACY1 104620 159895 M20.973 3.5.1.14 +HGNC:24104 ACY3 aminoacylase 3 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "HCBP1|MGC9740|ACY-3" N-acyl-aromatic-L-amino acid amidohydrolase aspartoacylase (aminoacylase) 3 2004-08-10 2015-03-09 2015-03-09 91703 ENSG00000132744 OTTHUMG00000167283 uc001omq.3 BC008689 NM_080658 CCDS8175 Q96HD9 14656720 MGI:1918920 RGD:1305394 ACY3 614413 3.5.1.114 +HGNC:179 ACYP1 acylphosphatase 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 acylphosphatase 1, erythrocyte (common) type 1998-04-21 2016-02-26 2016-02-26 97 ENSG00000119640 OTTHUMG00000171767 uc001xrg.4 X84194 NM_001107 "CCDS9838|CCDS76706" P07311 "7796909|9730610" MGI:1913454 RGD:1311327 ACYP1 600875 3.6.1.7 +HGNC:180 ACYP2 acylphosphatase 2 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 acylphosphatase 2, muscle type 1998-04-21 2016-02-26 2016-02-26 98 ENSG00000170634 OTTHUMG00000129287 uc002rxq.5 X84195 NM_001320586 "CCDS1850|CCDS82452" P14621 "8268218|25665007" MGI:1922822 RGD:1595836 ACYP2 102595 3.6.1.7 +HGNC:185 AD5 Alzheimer disease 5 phenotype phenotype only Approved 12p11.23-q13.12 12p11.23-q13.12 2000-07-31 2000-07-31 8081 "9333264|10712207" 602096 +HGNC:186 ADA adenosine deaminase protein-coding gene gene with protein product Approved 20q13.12 20q13.12 Adenosine deaminase family 1302 1986-01-01 2016-10-12 100 ENSG00000196839 OTTHUMG00000033081 uc002xmj.4 X02994 NM_000022 "CCDS13335|CCDS82618" P00813 "6198240|6090454" MGI:87916 RGD:2031 "ADAbase: Mutation registry for Adenosine Deaminase Deficiency|http://structure.bmc.lu.se/idbase/ADAbase/|LRG_16|http://www.lrg-sequence.org/LRG/LRG_16" ADA 608958 117771 objectId:1230 3.5.4.4 +HGNC:30713 ADAD1 adenosine deaminase domain containing 1 protein-coding gene gene with protein product Approved 4q27 04q27 Tenr adenosine deaminase domain containing 1 (testis-specific) Adenosine deaminases acting on RNA 1303 2007-05-31 2015-11-09 2015-11-09 132612 ENSG00000164113 OTTHUMG00000150128 uc003ieo.4 AK057303 NM_139243 "CCDS34058|CCDS54800|CCDS54801" Q96M93 "7543294|9541871" MGI:103258 RGD:1359309 ADAD1 614130 +HGNC:44550 ADAD1P1 adenosine deaminase domain containing 1 pseudogene 1 pseudogene pseudogene Approved 3p22.2 03p22.2 adenosine deaminase domain containing 1 (testis-specific) pseudogene 1 2012-11-15 2015-11-24 2015-11-24 100422386 NG_025689 PGOHUM00000237999 +HGNC:44552 ADAD1P2 adenosine deaminase domain containing 1 pseudogene 2 pseudogene pseudogene Approved 18q21.1 18q21.1 adenosine deaminase domain containing 1 (testis-specific) pseudogene 2 2012-11-15 2015-11-24 2015-11-24 100422407 ENSG00000267511 OTTHUMG00000179830 NG_026329 PGOHUM00000235056 +HGNC:30714 ADAD2 adenosine deaminase domain containing 2 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 "TENRL|FLJ00337" Adenosine deaminases acting on RNA 1303 2007-05-31 2014-11-19 161931 ENSG00000140955 OTTHUMG00000137637 uc002fhr.3 AF447586 NM_139174 "CCDS10944|CCDS45536" Q8NCV1 MGI:1923023 RGD:1586236 ADAD2 +HGNC:31853 ADAL adenosine deaminase like protein-coding gene gene with protein product Approved 15q15.3 15q15.3 Adenosine deaminase family 1302 2005-11-15 2016-06-24 2016-06-27 161823 ENSG00000168803 OTTHUMG00000176646 uc059iit.1 XM_091156 "CCDS32214|CCDS53936|CCDS81868" Q6DHV7 "16245011|23645737" MGI:1923144 RGD:1359517 ADAL +HGNC:187 ADAM1A ADAM metallopeptidase domain 1A (pseudogene) pseudogene pseudogene Approved 12q24.12-q24.13 12q24.12-q24.13 "FTNAP|PH-30a|Ftna|ADAM1P" fertilin alpha ADAM1 "a disintegrin and metalloproteinase domain 1 (fertilin alpha) pseudogene|ADAM metallopeptidase domain 1, pseudogene|ADAM metallopeptidase domain 1A, pseudogene" ADAM metallopeptidase domain containing 47 1998-12-01 2012-08-22 2014-11-28 2016-10-11 8759 ENSG00000229186 OTTHUMG00000154247 Y09232 NG_001216 9032439 MGI:2429504 RGD:621467 M12.P03 +HGNC:44366 ADAM1B ADAM metallopeptidase domain 1B (pseudogene) pseudogene pseudogene Approved 12q24.13 12q24.13 ADAM metallopeptidase domain 1B, pseudogene ADAM metallopeptidase domain containing 47 2012-08-22 2014-11-28 2014-11-28 100420505 ENSG00000226469 OTTHUMG00000154246 NG_024129 MGI:2429506 PGOHUM00000291806 +HGNC:198 ADAM2 ADAM metallopeptidase domain 2 protein-coding gene gene with protein product Approved 8p11.22 08p11.22 "PH-30b|PH30|CT15" cancer/testis antigen 15 FTNB fertilin beta ADAM metallopeptidase domain containing 47 1996-10-26 2008-07-31 2016-10-05 2515 ENSG00000104755 OTTHUMG00000164041 uc003xnj.5 U52370 NM_001464 "CCDS34884|CCDS64882|CCDS64883" Q99965 "8702389|9070941" MGI:1340894 RGD:69299 ADAM2 601533 M12.950 objectId:1651 +HGNC:209 ADAM3A ADAM metallopeptidase domain 3A (pseudogene) pseudogene pseudogene Approved 8p11.22 08p11.22 "ADAM3|tMDCI" CYRN1 "cyritestin 1|a disintegrin and metalloproteinase domain 3a (cyritestin 1)|ADAM metallopeptidase domain 3A, pseudogene|ADAM metallopeptidase domain 3A" ADAM metallopeptidase domain containing 47 1997-04-10 2012-06-11 2014-11-19 1587 ENSG00000197475 OTTHUMG00000154991 X89657 NR_001569 "9502432|11439107" MGI:102518 M12.P02 +HGNC:210 ADAM3B ADAM metallopeptidase domain 3B (pseudogene) pseudogene pseudogene Approved 16q12.1 16q12.1 cyritestin 2 CYRN2 "a disintegrin and metalloproteinase domain 3b (cyritestin 2)|ADAM metallopeptidase domain 3B (non-functional)" ADAM metallopeptidase domain containing 47 1997-04-10 2012-06-11 2014-11-19 1596 ENSG00000260089 OTTHUMG00000173492 Y10615 NG_001526 "9284909|9502432|11439107" PGOHUM00000250658 M12.975 +HGNC:212 ADAM5 ADAM metallopeptidase domain 5 (pseudogene) pseudogene pseudogene Approved 8p11.22 08p11.22 tMDCII ADAM5P "a disintegrin and metalloproteinase domain 5|ADAM metallopeptidase domain 5, pseudogene" ADAM metallopeptidase domain containing 47 2007-05-04 2012-08-22 2014-11-28 2016-10-05 255926 ENSG00000196115 OTTHUMG00000154982 BC047448 NR_001448 Q6NVV9 "8786143|10417343" MGI:104730 RGD:621471 PGOHUM00000250025 +HGNC:213 ADAM6 ADAM metallopeptidase domain 6 (pseudogene) pseudogene pseudogene Approved 14q32.33 14q32.33 tMDCIV C14orf96 "chromosome 14 open reading frame 96|a disintegrin and metalloproteinase domain 6|ADAM metallopeptidase domain 6|ADAM metallopeptidase domain 6, pseudogene" ADAM metallopeptidase domain containing 47 1998-12-01 2014-11-28 2015-01-29 8755 ENSG00000271968 OTTHUMG00000152319 AI024595 NR_002224 MGI:2676316 PGOHUM00000292470 +HGNC:214 ADAM7 ADAM metallopeptidase domain 7 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "GP-83|EAPI" a disintegrin and metalloproteinase domain 7 ADAM metallopeptidase domain containing 47 1998-12-01 2005-08-18 2015-08-24 8756 ENSG00000069206 OTTHUMG00000097859 uc003xeb.4 AF090327 NM_003817 CCDS6045 Q9H2U9 MGI:107247 RGD:62032 ADAM7 607310 M12.956 objectId:1655 +HGNC:215 ADAM8 ADAM metallopeptidase domain 8 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "CD156|MS2|CD156a" a disintegrin and metalloproteinase domain 8 "ADAM metallopeptidase domain containing|CD molecules" "47|471" 1996-11-13 2005-08-18 2015-08-24 101 ENSG00000151651 OTTHUMG00000019309 uc021qbe.2 D26579 NM_001109 "CCDS31319|CCDS58102|CCDS58103" P78325 9126482 MGI:107825 RGD:1566394 ADAM8 602267 M12.208 objectId:1656 CD156A +HGNC:216 ADAM9 ADAM metallopeptidase domain 9 protein-coding gene gene with protein product Approved 8p11.22 08p11.22 "MDC9|KIAA0021|MCMP|Mltng" meltrin gamma CORD9 "a disintegrin and metalloproteinase domain 9 (meltrin gamma)|cone rod dystrophy 9" ADAM metallopeptidase domain containing 47 1998-12-01 2010-06-24 2016-10-05 8754 ENSG00000168615 OTTHUMG00000159783 uc003xmr.4 U41766 XM_017013942 CCDS6112 Q13443 "8647900|11581183|19409519" MGI:105376 RGD:621473 ADAM9 602713 201516 M12.209 objectId:1657 +HGNC:188 ADAM10 ADAM metallopeptidase domain 10 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "kuz|MADM|HsT18717|CD156c" a disintegrin and metalloproteinase domain 10 "ADAM metallopeptidase domain containing|CD molecules" "47|471" 1997-03-21 2005-08-18 2016-10-05 102 ENSG00000137845 OTTHUMG00000132633 uc002afd.3 AF009615 NM_001110 CCDS10167 O14672 "9344679|9441766" MGI:109548 RGD:2032 ADAM10 602192 358659 M12.210 objectId:1658 CD156c +HGNC:189 ADAM11 ADAM metallopeptidase domain 11 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 metalloproteinase-like, disintegrin-like, cysteine-rich protein MDC a disintegrin and metalloproteinase domain 11 ADAM metallopeptidase domain containing 47 1993-11-01 2005-08-18 2016-10-05 4185 ENSG00000073670 OTTHUMG00000179038 uc002ihh.4 D17390 NM_002390 "CCDS11486|CCDS82139" O75078 8252040 MGI:1098667 RGD:1307515 ADAM11 155120 M12.976 objectId:1659 +HGNC:190 ADAM12 ADAM metallopeptidase domain 12 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 "MCMPMltna|MLTN" meltrin alpha a disintegrin and metalloproteinase domain 12 (meltrin alpha) ADAM metallopeptidase domain containing 47 1998-12-01 2008-07-29 2016-10-05 8038 ENSG00000148848 OTTHUMG00000019243 uc001ljk.4 AF023476 XM_017016705 "CCDS7653|CCDS7654" O43184 "9417060|18342566" MGI:105378 RGD:1583652 ADAM12 602714 M12.212 objectId:1660 +HGNC:43841 ADAM12-OT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-04-22 228 +HGNC:193 ADAM15 ADAM metallopeptidase domain 15 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 MDC15 metargidin a disintegrin and metalloproteinase domain 15 (metargidin) ADAM metallopeptidase domain containing 47 1998-12-01 2007-06-04 2015-08-24 8751 ENSG00000143537 OTTHUMG00000013898 uc001fgr.3 U46005 NM_003815 "CCDS1084|CCDS1085|CCDS1086|CCDS1087|CCDS1088|CCDS44236|CCDS58031|CCDS58032|CCDS60282" Q13444 9516430 MGI:1333882 RGD:620402 ADAM15 605548 M12.215 objectId:1661 +HGNC:195 ADAM17 ADAM metallopeptidase domain 17 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "cSVP|CD156B" TACE tumor necrosis factor, alpha, converting enzyme "ADAM metallopeptidase domain containing|CD molecules" "47|471" 1997-04-10 2008-07-31 2016-10-05 6868 ENSG00000151694 OTTHUMG00000090425 uc002qzu.5 U69611 XM_011510375 CCDS1665 P78536 "9034190|9574564" MGI:1096335 RGD:620404 ADAM17 603639 299456 M12.217 objectId:1662 CD156B +HGNC:196 ADAM18 ADAM metallopeptidase domain 18 protein-coding gene gene with protein product Approved 8p11.22 08p11.22 "tMDCIII|ADAM27" a disintegrin and metalloproteinase domain 18 ADAM metallopeptidase domain containing 47 1998-12-01 2005-08-18 2015-08-26 8749 ENSG00000168619 OTTHUMG00000164040 uc003xni.4 AJ133004 NM_014237 "CCDS6113|CCDS55225|CCDS83287" Q9Y3Q7 12200459 MGI:105986 RGD:620405 ADAM18 M12.957 objectId:1663 +HGNC:197 ADAM19 ADAM metallopeptidase domain 19 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 MLTNB meltrin beta a disintegrin and metalloproteinase domain 19 (meltrin beta) ADAM metallopeptidase domain containing 47 1998-12-01 2010-06-24 2014-11-19 8728 ENSG00000135074 OTTHUMG00000130242 uc003lwz.5 AF311317 NM_033274 CCDS4338 Q9H013 9806848 MGI:105377 RGD:1585017 ADAM19 603640 M12.214 objectId:1664 +HGNC:199 ADAM20 ADAM metallopeptidase domain 20 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 a disintegrin and metalloproteinase domain 20 ADAM metallopeptidase domain containing 47 1998-12-01 2005-08-18 2015-09-10 8748 ENSG00000134007 OTTHUMG00000167548 uc001xme.4 AF029899 XM_005268151 CCDS32111 O43506 9469942 "MGI:1345157|MGI:2152342|MGI:3045694" RGD:1309066 ADAM20 603712 M12.218 objectId:1665 +HGNC:20102 ADAM20P1 ADAM metallopeptidase domain 20 pseudogene 1 pseudogene pseudogene Approved 14q24.2 14q24.2 C14orf55 chromosome 14 open reading frame 55 2003-01-13 2012-04-30 2012-04-30 2012-04-30 317760 ENSG00000259158 OTTHUMG00000171329 uc059cwv.1 BC047939 NR_037933 PGOHUM00000247846 +HGNC:43901 ADAM20P2 ADAM metallopeptidase domain 20 pseudogene 2 pseudogene pseudogene Approved 4q34.2 04q34.2 2012-04-30 2014-11-19 100533671 ENSG00000248574 OTTHUMG00000160759 NG_028850 PGOHUM00000246145 +HGNC:43902 ADAM20P3 ADAM metallopeptidase domain 20 pseudogene 3 pseudogene pseudogene Approved 4q35.2 04q35.2 2012-04-30 2014-11-19 644325 ENSG00000249162 OTTHUMG00000160214 NG_023541 PGOHUM00000258178 +HGNC:200 ADAM21 ADAM metallopeptidase domain 21 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 ADAM31 a disintegrin and metalloproteinase domain 21 ADAM metallopeptidase domain containing 47 1998-12-01 2005-08-18 2015-09-21 8747 ENSG00000139985 OTTHUMG00000171328 uc001xmd.4 AF029900 NM_003813 CCDS9804 Q9UKJ8 9469942 MGI:1861229 ADAM21 603713 M12.234 objectId:1666 +HGNC:19822 ADAM21P1 ADAM metallopeptidase domain 21 pseudogene 1 pseudogene pseudogene Approved 14q24.2 14q24.2 ADAM21P "a disintegrin and metalloproteinase domain 21 pseudogene|ADAM metallopeptidase domain 21 pseudogene" 2003-01-13 2010-01-12 2010-01-12 2014-11-19 145241 ENSG00000235812 OTTHUMG00000166565 NG_002467 PGOHUM00000257964 +HGNC:201 ADAM22 ADAM metallopeptidase domain 22 protein-coding gene gene with protein product Approved 7q21.12 07q21.12 MDC2 metalloproteinase-like, disintegrin-like, and cysteine-rich protein 2 a disintegrin and metalloproteinase domain 22 ADAM metallopeptidase domain containing 47 1998-12-01 2005-08-18 2016-10-05 53616 ENSG00000008277 OTTHUMG00000137417 uc003ujn.4 AB009671 NM_021723 "CCDS43608|CCDS43609|CCDS43610|CCDS47637" Q9P0K1 "9693107|10524237" MGI:1340046 RGD:1585016 ADAM22 603709 M12.978 objectId:1667 +HGNC:202 ADAM23 ADAM metallopeptidase domain 23 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 MDC3 a disintegrin and metalloproteinase domain 23 ADAM metallopeptidase domain containing 47 1998-12-01 2005-08-18 2016-10-05 8745 ENSG00000114948 OTTHUMG00000132919 uc002vbq.6 AB009672 NM_003812 CCDS2369 O75077 9693107 MGI:1345162 RGD:1305739 ADAM23 603710 M12.979 objectId:1668 +HGNC:203 ADAM24P ADAM metallopeptidase domain 24, pseudogene pseudogene pseudogene Approved 8p22 08p22 a disintegrin and metalloproteinase domain 24 ADAM metallopeptidase domain containing 47 2010-08-18 2005-08-18 2014-11-18 646479 ENSG00000214607 OTTHUMG00000154893 NG_022410 MGI:105984 PGOHUM00000249583 +HGNC:206 ADAM28 ADAM metallopeptidase domain 28 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "eMDCII|MDC-Lm|MDC-Ls|ADAM23" a disintegrin and metalloproteinase domain 28 ADAM metallopeptidase domain containing 47 1999-07-29 2005-08-18 2014-11-19 10863 ENSG00000042980 OTTHUMG00000163780 uc003xdy.4 AJ242015 NM_021778 "CCDS34865|CCDS47830" Q9UKQ2 MGI:105988 RGD:727820 ADAM28 606188 M12.224 objectId:1669 +HGNC:207 ADAM29 ADAM metallopeptidase domain 29 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 "svph1|CT73" cancer/testis antigen 73 a disintegrin and metalloproteinase domain 29 ADAM metallopeptidase domain containing 47 1999-08-23 2005-08-18 2015-08-26 11086 ENSG00000168594 OTTHUMG00000160764 uc031shw.1 AF171929 NM_014269 CCDS3823 Q9UKF5 10644455 MGI:2676326 ADAM29 604778 M12.981 objectId:1670 +HGNC:208 ADAM30 ADAM metallopeptidase domain 30 protein-coding gene gene with protein product Approved 1p12 01p12 svph4 a disintegrin and metalloproteinase domain 30 ADAM metallopeptidase domain containing 47 1999-08-23 2005-08-18 2015-08-24 11085 ENSG00000134249 OTTHUMG00000189303 uc001eij.4 AF171932 NM_021794 CCDS907 Q9UKF2 MGI:1918328 RGD:1594713 ADAM30 604779 M12.232 objectId:1671 +HGNC:15479 ADAM32 ADAM metallopeptidase domain 32 protein-coding gene gene with protein product Approved 8p11.22 08p11.22 a disintegrin and metalloproteinase domain 32 ADAM metallopeptidase domain containing 47 2004-02-09 2005-08-18 2015-08-24 203102 ENSG00000197140 OTTHUMG00000164071 uc003xmt.5 BC026085 NM_145004 "CCDS47846|CCDS83286" Q8TC27 12568724 MGI:2653822 RGD:735114 ADAM32 M12.953 objectId:1672 +HGNC:15478 ADAM33 ADAM metallopeptidase domain 33 protein-coding gene gene with protein product Approved 20p13 20p13 "DKFZp434K0521|dJ964F7.1" C20orf153 "a disintegrin and metalloproteinase domain 33|chromosome 20 open reading frame 153" ADAM metallopeptidase domain containing 47 2001-04-10 2005-08-18 2015-08-26 80332 ENSG00000149451 OTTHUMG00000031758 uc002wit.5 "AL117415|AB055891" NM_025220 "CCDS13058|CCDS63219" Q9BZ11 11814695 MGI:1341813 RGD:1305278 ADAM33 607114 M12.244 objectId:1673 +HGNC:16299 ADAMDEC1 ADAM like decysin 1 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 M12.219 2001-08-24 2016-05-04 2016-10-05 27299 ENSG00000134028 OTTHUMG00000097858 uc003xdz.2 Y13323 NM_014479 "CCDS6044|CCDS55212" O15204 "9271581|12037602" MGI:1917650 RGD:1309861 ADAMDEC1 606393 M12.219 +HGNC:217 ADAMTS1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "C3-C5|METH1|KIAA1346" a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 1 ADAM metallopeptidases with thrombospondin type 1 motif 50 1998-11-19 2015-11-09 2015-11-09 9510 ENSG00000154734 OTTHUMG00000078688 uc002ymf.4 AF060152 NM_006988 CCDS33524 Q9UHI8 10438512 MGI:109249 RGD:621241 ADAMTS1 605174 M12.222 objectId:1674 +HGNC:218 ADAMTS2 ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "ADAMTS-3|hPCPNI|PCINP|ADAM-TS2|NPI" "procollagen I N-proteinase|procollagen N-endopeptidase" a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 2 ADAM metallopeptidases with thrombospondin type 1 motif 50 1999-04-15 2015-11-09 2015-11-09 9509 ENSG00000087116 OTTHUMG00000130915 uc003mjw.3 AJ003125 NM_014244 "CCDS4444|CCDS34311" O95450 "10094461|15373769" MGI:1347356 RGD:1565950 ADAMTS2 604539 117780 M12.301 objectId:1675 +HGNC:219 ADAMTS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "KIAA0366|ADAMTS-4" a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 3 ADAM metallopeptidases with thrombospondin type 1 motif 50 1999-04-15 2015-11-09 2016-10-05 9508 ENSG00000156140 OTTHUMG00000129912 uc003hgk.2 AB002364 XM_011532421 CCDS3553 O15072 10094461 MGI:3045353 RGD:1310750 ADAMTS3 605011 M12.220 objectId:1676 3.4.24.- +HGNC:220 ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "KIAA0688|ADAMTS-2|ADMP-1" a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 4 ADAM metallopeptidases with thrombospondin type 1 motif 50 1999-04-15 2015-11-09 2016-10-05 9507 ENSG00000158859 OTTHUMG00000034349 uc001fyt.5 AB014588 NM_005099 CCDS1223 O75173 10094461 MGI:1339949 RGD:621242 ADAMTS4 603876 M12.221 objectId:1677 +HGNC:221 ADAMTS5 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "ADMP-2|ADAMTS11" aggrecanase-2 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) ADAM metallopeptidases with thrombospondin type 1 motif 50 1999-08-23 2015-11-09 2015-11-09 11096 ENSG00000154736 OTTHUMG00000078686 uc002ymg.4 AF142099 NM_007038 CCDS13579 Q9UNA0 10438522 MGI:1346321 RGD:735196 ADAMTS5 605007 M12.225 objectId:1678 +HGNC:222 ADAMTS6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding gene gene with protein product Approved 5q12.3 05q12.3 ADAM-TS6 a disintegrin and metalloproteinase with thrombospondin motifs 6 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 6 ADAM metallopeptidases with thrombospondin type 1 motif 50 1999-09-06 2015-11-09 2016-10-05 11174 ENSG00000049192 OTTHUMG00000074079 uc003jtp.4 AF140674 NM_197941 CCDS3983 Q9UKP5 10464288 MGI:1347348 RGD:1307678 ADAMTS6 605008 M12.230 objectId:1679 +HGNC:223 ADAMTS7 ADAM metallopeptidase with thrombospondin type 1 motif 7 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "ADAM-TS7|DKFZp434H204" "COMPase|a disintegrin and metalloprotease with thrombospondin motifs-7 preproprotein" a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 7 ADAM metallopeptidases with thrombospondin type 1 motif 50 1999-09-06 2015-11-09 2015-11-09 11173 ENSG00000136378 OTTHUMG00000172907 uc002bej.4 AF140675 NM_014272 CCDS32303 Q9UKP4 10464288 MGI:1347346 RGD:1306713 ADAMTS7 605009 M12.231 objectId:1680 +HGNC:49407 ADAMTS7P1 ADAMTS7 pseudogene 1 pseudogene pseudogene Approved 15q25.2 15q25.2 ADAMTS7P2 ADAMTS7 pseudogene 2 2013-11-05 2015-07-30 390660 ENSG00000274376 OTTHUMG00000172575 NR_045529 PGOHUM00000293315 +HGNC:49409 ADAMTS7P3 ADAMTS7 pseudogene 3 pseudogene pseudogene Approved 15q24.3 15q24.3 2013-11-05 2013-11-05 400406 ENSG00000261143 OTTHUMG00000172983 NG_028863 PGOHUM00000247191 +HGNC:49410 ADAMTS7P4 ADAMTS7 pseudogene 4 pseudogene pseudogene Approved 15q25.3 15q25.3 2013-11-05 2013-11-05 642935 ENSG00000218052 OTTHUMG00000172143 NG_022116 PGOHUM00000246914 +HGNC:224 ADAMTS8 ADAM metallopeptidase with thrombospondin type 1 motif 8 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "METH2|FLJ41712|ADAM-TS8" a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 8 ADAM metallopeptidases with thrombospondin type 1 motif 50 1999-08-23 2015-11-09 2016-10-05 11095 ENSG00000134917 OTTHUMG00000165656 uc001qgg.5 AF060153 NM_007037 CCDS41732 Q9UP79 10438512 MGI:1353468 RGD:1308511 ADAMTS8 605175 M12.226 objectId:1681 +HGNC:13202 ADAMTS9 ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 KIAA1312 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 9 ADAM metallopeptidases with thrombospondin type 1 motif 50 2000-11-27 2015-11-09 2015-11-09 56999 ENSG00000163638 OTTHUMG00000158722 uc003dmg.4 AF261918 NM_182920 "CCDS2903|CCDS82801" Q9P2N4 10936055 MGI:1916320 RGD:1306889 ADAMTS9 605421 M12.021 objectId:1682 +HGNC:40625 ADAMTS9-AS1 ADAMTS9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 ADAMTS9 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-18 101929335 ENSG00000241158 OTTHUMG00000158723 uc021xaa.3 NR_110150 +HGNC:42435 ADAMTS9-AS2 ADAMTS9 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 ADAMTS9 antisense RNA 2 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100507098 ENSG00000241684 OTTHUMG00000158725 uc003dml.5 NR_038264 24833086 +HGNC:13201 ADAMTS10 ADAM metallopeptidase with thrombospondin type 1 motif 10 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 ADAM-TS10 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10 ADAM metallopeptidases with thrombospondin type 1 motif 50 2001-04-05 2015-11-09 2015-11-09 81794 ENSG00000142303 OTTHUMG00000182216 uc002mkj.3 AF163762 NM_030957 "CCDS12206|CCDS62529" Q9H324 MGI:2449112 RGD:1598320 ADAMTS10 608990 117773 M12.235 objectId:1683 +HGNC:14605 ADAMTS12 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding gene gene with protein product Approved 5p13.3-p13.2 05p13.3-p13.2 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 12 ADAM metallopeptidases with thrombospondin type 1 motif 50 2001-04-05 2015-11-09 2016-10-11 81792 ENSG00000151388 OTTHUMG00000162088 uc003jia.3 AJ250725 NM_030955 CCDS34140 P58397 11279086 MGI:2146046 RGD:1307323 ADAMTS12 606184 M12.237 objectId:1684 +HGNC:1366 ADAMTS13 ADAM metallopeptidase with thrombospondin type 1 motif 13 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "VWFCP|TTP|vWF-CP|FLJ42993|MGC118899|MGC118900|DKFZp434C2322" C9orf8 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13 ADAM metallopeptidases with thrombospondin type 1 motif 50 1999-08-23 2001-09-21 2015-11-09 2016-10-12 11093 ENSG00000160323 OTTHUMG00000020876 uc004cdv.6 AJ011374 NM_139025 "CCDS6970|CCDS6971|CCDS6972" Q76LX8 "11557746|11535495" MGI:2685556 RGD:1311594 LRG_544|http://www.lrg-sequence.org/LRG/LRG_544 ADAMTS13 604134 117776 M12.241 objectId:1685 +HGNC:14899 ADAMTS14 ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 14 ADAM metallopeptidases with thrombospondin type 1 motif 50 2002-01-09 2015-11-09 2016-10-05 140766 ENSG00000138316 OTTHUMG00000018414 uc001jrg.4 AF358666 NM_080722 "CCDS7306|CCDS7307" Q8WXS8 11779638 MGI:2179942 RGD:1308899 ADAMTS14 607506 M12.024 objectId:1686 +HGNC:16305 ADAMTS15 ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 15 ADAM metallopeptidases with thrombospondin type 1 motif 50 2002-02-13 2015-11-09 2016-10-05 170689 ENSG00000166106 OTTHUMG00000165657 uc010scd.3 AJ315733 NM_139055 CCDS8488 Q8TE58 11867212 MGI:2449569 RGD:1309770 ADAMTS15 607509 M12.025 objectId:1687 +HGNC:17108 ADAMTS16 ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding gene gene with protein product Approved 5p15.32 05p15.32 ADAMTS16s a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 16 ADAM metallopeptidases with thrombospondin type 1 motif 50 2002-02-13 2015-11-09 2016-10-05 170690 ENSG00000145536 OTTHUMG00000161663 uc003jdl.4 AJ315734 NM_139056 CCDS43299 Q8TE57 11867212 MGI:2429637 RGD:1310046 ADAMTS16 607510 M12.026 objectId:1688 +HGNC:17109 ADAMTS17 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "FLJ32769|FLJ16363" a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 17 ADAM metallopeptidases with thrombospondin type 1 motif 50 2002-02-13 2015-11-09 2016-10-05 170691 ENSG00000140470 OTTHUMG00000149867 uc002bvv.2 AJ315735 NM_139057 CCDS10383 Q8TE56 11867212 MGI:3588195 RGD:1308783 ADAMTS17 607511 304263 M12.027 objectId:1689 +HGNC:17110 ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 ADAMTS21 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 18 ADAM metallopeptidases with thrombospondin type 1 motif 50 2002-02-13 2015-11-09 2016-10-05 170692 ENSG00000140873 OTTHUMG00000137619 uc002ffc.4 AJ311903 NM_199355 CCDS10926 Q8TE60 "11867212|17546048" MGI:2442600 RGD:1560118 ADAMTS18 607512 376567 M12.028 objectId:1690 +HGNC:17111 ADAMTS19 ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding gene gene with protein product Approved 5q23.3 05q23.3 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 19 ADAM metallopeptidases with thrombospondin type 1 motif 50 2002-03-05 2015-11-09 2015-11-09 171019 ENSG00000145808 OTTHUMG00000128990 uc003kvb.2 AJ311904 NM_133638 CCDS4146 Q8TE59 11867212 MGI:2442875 RGD:1308359 ADAMTS19 607513 M12.029 objectId:1691 +HGNC:40797 ADAMTS19-AS1 ADAMTS19 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q23.3 05q23.3 RP11-346A9.1 2013-06-19 2014-11-18 103689846 ENSG00000249421 OTTHUMG00000163040 DA728271 NR_125748 +HGNC:17178 ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding gene gene with protein product Approved 12q12 12q12 GON-1 a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 20 ADAM metallopeptidases with thrombospondin type 1 motif 50 2003-05-22 2015-11-09 2015-11-09 80070 ENSG00000173157 OTTHUMG00000169353 uc010skx.3 AF488804 NM_025003 CCDS31778 P59510 "12514189|12562771" MGI:2660628 RGD:1307725 ADAMTS20 611681 M12.246 objectId:1692 +HGNC:14632 ADAMTSL1 ADAMTS like 1 protein-coding gene gene with protein product Approved 9p22.2-p22.1 09p22.2-p22.1 "ADAMTSR1|FLJ35283" punctin C9orf94 chromosome 9 open reading frame 94 "I-set domain containing|ADAMTS like" "593|947" 2002-01-11 2015-11-09 2016-10-11 92949 ENSG00000178031 OTTHUMG00000019604 uc003zne.5 AF176313 XM_011518063 "CCDS6485|CCDS47954" Q8N6G6 "9628581|11805097" MGI:1924989 RGD:1306439 ADAMTSL1 609198 +HGNC:14631 ADAMTSL2 ADAMTS like 2 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 KIAA0605 ADAMTS like 947 2005-01-12 2015-11-09 2016-10-05 9719 ENSG00000197859 OTTHUMG00000131706 uc011mdl.2 AB011177 NM_014694 CCDS6976 Q86TH1 "9628581|14667842" MGI:1925044 RGD:1305459 ADAMTSL2 612277 183895 +HGNC:14633 ADAMTSL3 ADAMTS like 3 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "KIAA1233|punctin-2" "I-set domain containing|Immunoglobulin like domain containing|ADAMTS like" "593|594|947" 2004-04-21 2015-11-09 2015-11-09 57188 ENSG00000156218 OTTHUMG00000147363 uc002bjz.5 AF237652 NM_207517 "CCDS10326|CCDS73773" P82987 "9628581|10574462" MGI:3028499 RGD:1305155 ADAMTSL3 609199 +HGNC:19706 ADAMTSL4 ADAMTS like 4 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 DKFZP434K1772 TSRC1 thrombospondin repeat containing 1 ADAMTS like 947 2003-06-02 2005-12-01 2015-11-09 2015-11-09 54507 ENSG00000143382 OTTHUMG00000034863 uc001eux.5 BC027478 NM_019032 "CCDS955|CCDS30852|CCDS72908" Q6UY14 12706885 MGI:2389008 RGD:1561012 ADAMTSL4 610113 178791 +HGNC:32041 ADAMTSL4-AS1 ADAMTSL4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q21.2 01q21.2 FLJ45786 C1orf138 chromosome 1 open reading frame 138 2005-07-08 2013-08-29 2013-08-29 2014-11-18 574406 ENSG00000203804 OTTHUMG00000034866 AK127688 NR_104133 Q5T5F5 +HGNC:27912 ADAMTSL5 ADAMTS like 5 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 THSD6 thrombospondin, type I, domain containing 6 ADAMTS like 947 2004-03-17 2006-02-07 2015-11-09 2015-11-09 339366 ENSG00000185761 OTTHUMG00000180093 uc002ltd.2 BC040620 XM_294919 CCDS12071 Q6ZMM2 MGI:1913798 RGD:1305607 ADAMTSL5 +HGNC:16486 ADAP1 ArfGAP with dual PH domains 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 GCS1L CENTA1 centaurin, alpha 1 "ArfGAPs|Pleckstrin homology domain containing" "395|682" 2001-10-03 2008-09-22 2008-09-22 2014-11-19 11033 ENSG00000105963 OTTHUMG00000023380 uc003sjo.6 AJ006422 NM_006869 "CCDS5318|CCDS64576|CCDS64577|CCDS75558" O75689 10333475 MGI:2442201 RGD:621418 ADAP1 608114 +HGNC:16487 ADAP2 ArfGAP with dual PH domains 2 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 CENTA2 centaurin, alpha 2 "ArfGAPs|Pleckstrin homology domain containing" "395|682" 2001-09-04 2008-09-22 2008-09-22 2014-11-19 55803 ENSG00000184060 OTTHUMG00000132868 uc002hfx.4 AJ238994 NM_018404 CCDS11261 Q9NPF8 MGI:2663075 RGD:708487 ADAP2 608635 +HGNC:225 ADAR adenosine deaminase, RNA specific protein-coding gene gene with protein product Approved 1q21.3 01q21.3 ADAR1 "IFI4|G1P1" interferon-induced protein 4 Adenosine deaminases acting on RNA 1303 1995-12-12 2016-06-02 2016-06-02 103 ENSG00000160710 OTTHUMG00000037261 uc001ffh.4 BC038227 NM_001111 "CCDS1071|CCDS30879" P55265 7972084 MGI:1889575 RGD:71099 ADAR 146920 119502 3.5.4.- +HGNC:226 ADARB1 adenosine deaminase, RNA specific B1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "ADAR2|DRADA2|ADAR2g|DRABA2|RED1|hRED1|ADAR2a-L1|ADAR2a-L2|ADAR2a-L3|ADAR2a|ADAR2b|ADAR2c|ADAR2d" RED1 homolog (rat) adenosine deaminase, RNA-specific, B1 (homolog of rat RED1) Adenosine deaminases acting on RNA 1303 1996-10-02 2016-03-14 2016-03-14 104 ENSG00000197381 OTTHUMG00000090295 uc002zgt.3 U76420 NM_015833 "CCDS33589|CCDS33590|CCDS42970" P78563 "9143496|14759252" MGI:891999 RGD:2033 ADARB1 601218 3.5.-.- +HGNC:227 ADARB2 adenosine deaminase, RNA specific B2 (inactive) protein-coding gene gene with protein product Approved 10p15.3 10p15.3 "RED2|hRED2|ADAR3" RED2 homolog (rat) "adenosine deaminase, RNA-specific, B2 (RED2 homolog rat)|adenosine deaminase, RNA-specific, B2|adenosine deaminase, RNA-specific, B2 (non-functional)" Adenosine deaminases acting on RNA 1303 1996-10-02 2016-03-14 2016-03-14 105 ENSG00000185736 OTTHUMG00000017543 uc009xhq.4 AF034837 NM_018702 CCDS7058 Q9NS39 "9272162|10836796" MGI:2151118 RGD:621519 ADARB2 602065 3.5.-.- +HGNC:23299 ADARB2-AS1 ADARB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p15.3 10p15.3 bA466B20.1 "C10orf109|NCRNA00168" "chromosome 10 open reading frame 109|non-protein coding RNA 168|ADARB2 antisense RNA 1 (non-protein coding)" 2004-05-27 2011-08-11 2012-08-15 2014-11-19 642394 ENSG00000205696 OTTHUMG00000017542 uc057rfm.1 NR_033387 A8MUL3 +HGNC:228 ADAT1 adenosine deaminase, tRNA specific 1 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 Adenosine deaminases acting on RNA 1303 1999-10-14 2016-03-14 2016-10-05 23536 ENSG00000065457 OTTHUMG00000137611 uc002feo.3 AF125188 NM_012091 CCDS10922 Q9BUB4 10430867 MGI:1353631 RGD:1591020 ADAT1 604230 +HGNC:21172 ADAT2 adenosine deaminase, tRNA specific 2 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 "dJ20N2.1|TAD2" DEADC1 "deaminase domain containing 1|adenosine deaminase, tRNA-specific 2, TAD2 homolog (S. cerevisiae)" Adenosine deaminases acting on RNA 1303 2003-11-26 2007-08-16 2016-03-14 2016-03-14 134637 ENSG00000189007 OTTHUMG00000015725 uc003qjj.4 BC037955 XM_059727 "CCDS43511|CCDS69219" Q7Z6V5 12457566 MGI:1914007 RGD:1309642 ADAT2 615388 +HGNC:25151 ADAT3 adenosine deaminase, tRNA specific 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 TAD3 tRNA-specific adenosine deaminase 3 homolog (S. cerevisiae) adenosine deaminase, tRNA-specific 3, TAD3 homolog (S. cerevisiae) Adenosine deaminases acting on RNA 1303 2007-08-16 2016-03-14 2016-04-25 113179 ENSG00000213638 OTTHUMG00000154591 uc002luh.5 BC011824 NM_138422 CCDS12076 Q96EY9 12457566 MGI:1924344 RGD:1642417 ADAT3 615302 365118 +HGNC:19038 ADCK1 aarF domain containing kinase 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FLJ39600 2003-07-21 2015-10-15 57143 ENSG00000063761 OTTHUMG00000171520 uc001xui.3 AK096919 NM_020421 "CCDS9869|CCDS45144" Q86TW2 12471243 MGI:1919363 RGD:1308263 ADCK1 objectId:1925 +HGNC:19039 ADCK2 aarF domain containing kinase 2 protein-coding gene gene with protein product Approved 7q34 07q34 MGC20727 2003-07-21 2015-08-24 90956 ENSG00000133597 OTTHUMG00000157409 uc003vvy.2 AF131745 NM_052853 CCDS5861 Q7Z695 MGI:1889336 RGD:1311058 ADCK2 objectId:1926 +HGNC:21738 ADCK5 aarF domain containing kinase 5 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FLJ35454 2003-07-21 2016-04-25 203054 ENSG00000173137 OTTHUMG00000165190 uc003zch.5 BC032402 NM_174922 CCDS34965 Q3MIX3 MGI:2679274 RGD:1305504 ADCK5 objectId:1929 +HGNC:229 ADCP1 adenosine deaminase complexing protein 1 other unknown Approved 6 06 1986-01-01 2012-04-19 106 "279003|6933468|6974523" +HGNC:232 ADCY1 adenylate cyclase 1 protein-coding gene gene with protein product Approved 7p12.3 07p12.3 AC1 adenylate cyclase 1 (brain) Adenylate cyclases 53 1992-12-02 2016-06-24 2016-06-24 107 ENSG00000164742 OTTHUMG00000155420 uc003tne.5 L05500 NM_021116 "CCDS34631|CCDS75593" Q08828 8314585 MGI:99677 RGD:1309318 ADCY1 103072 404762 objectId:1278 4.6.1.1 +HGNC:233 ADCY2 adenylate cyclase 2 protein-coding gene gene with protein product Approved 5p15.31 05p15.31 "HBAC2|KIAA1060|AC2" adenylate cyclase 2 (brain) Adenylate cyclases 53 1993-02-11 2016-06-24 2016-10-05 108 ENSG00000078295 OTTHUMG00000090476 uc003jdz.2 AB028983 NM_020546 CCDS3872 Q08462 1427768 MGI:99676 RGD:619965 ADCY2 103071 objectId:1279 4.6.1.1 +HGNC:234 ADCY3 adenylate cyclase 3 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 AC3 Adenylate cyclases 53 1994-07-22 2015-08-26 109 ENSG00000138031 OTTHUMG00000094765 uc002rfs.5 AF033861 NM_004036 "CCDS1715|CCDS82424" O60266 9920776 MGI:99675 RGD:71009 ADCY3 600291 objectId:1280 4.6.1.1 +HGNC:235 ADCY4 adenylate cyclase 4 protein-coding gene gene with protein product Approved 14q12 14q12 AC4 Adenylate cyclases 53 1994-07-22 2016-10-05 196883 ENSG00000129467 OTTHUMG00000029347 uc001wox.3 AF497516 NM_001198592 CCDS9627 Q8NFM4 7766992 MGI:99674 RGD:2034 ADCY4 600292 objectId:1281 4.6.1.1 +HGNC:236 ADCY5 adenylate cyclase 5 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 AC5 Adenylate cyclases 53 1994-07-22 2015-09-11 111 ENSG00000173175 OTTHUMG00000159517 uc003egh.3 U65473 XM_171048 "CCDS3022|CCDS56274" O95622 10481931 MGI:99673 RGD:71014 ADCY5 600293 327400 objectId:1282 4.6.1.1 +HGNC:237 ADCY6 adenylate cyclase 6 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 AC6 Adenylate cyclases 53 1994-07-22 2015-09-11 112 ENSG00000174233 OTTHUMG00000170396 uc001rsh.5 NM_020983 CCDS8767 O43306 MGI:87917 RGD:2035 ADCY6 600294 403669 objectId:1283 4.6.1.1 +HGNC:238 ADCY7 adenylate cyclase 7 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "KIAA0037|AC7" Adenylate cyclases 53 1994-07-22 2015-09-11 113 ENSG00000121281 OTTHUMG00000133172 uc002egd.3 D25538 XM_011522836 "CCDS10741|CCDS73882" P51828 7860067 MGI:102891 RGD:619966 ADCY7 600385 objectId:1284 4.6.1.1 +HGNC:239 ADCY8 adenylate cyclase 8 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 "HBAC1|AC8" ADCY3 adenylate cyclase 8 (brain) Adenylate cyclases 53 1993-02-11 2016-06-24 2016-10-05 114 ENSG00000155897 OTTHUMG00000164756 uc003ytd.5 Z35309 XM_005250769 CCDS6363 P40145 8076676 MGI:1341110 RGD:2036 ADCY8 103070 objectId:1285 4.6.1.1 +HGNC:240 ADCY9 adenylate cyclase 9 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 AC9 Adenylate cyclases 53 1994-07-22 2015-08-24 115 ENSG00000162104 OTTHUMG00000177612 uc002cvx.4 AF036927 XM_005255079 CCDS32382 O60503 9628827 MGI:108450 RGD:1304747 ADCY9 603302 objectId:1286 4.6.1.1 +HGNC:21285 ADCY10 adenylate cyclase 10, soluble protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "SAC|Sacy|SACI|HCA2|RP1-313L4.2" "soluble adenylyl cyclase|Hypercalciuria, absorptive, 2" Adenylate cyclases 53 2008-01-16 2016-06-24 2016-10-05 55811 ENSG00000143199 OTTHUMG00000034573 uc001ger.4 AF271058 NM_018417 "CCDS1265|CCDS53426|CCDS72977" Q96PN6 23255611 MGI:2660854 RGD:708450 ADCY10 605205 168172 4.6.1.1 +HGNC:44143 ADCY10P1 adenylate cyclase 10, soluble pseudogene 1 pseudogene pseudogene Approved 6p21.1 06p21.1 adenylate cyclase 10 (soluble) pseudogene 1 2012-06-30 2016-06-27 2016-06-27 221442 ENSG00000161912 OTTHUMG00000014668 NR_026938 PGOHUM00000243618 +HGNC:241 ADCYAP1 adenylate cyclase activating polypeptide 1 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 PACAP "prepro-PACAP|pituitary adenylate cyclase activating polypeptide" adenylate cyclase activating polypeptide 1 (pituitary) Endogenous ligands 542 1992-12-02 2016-04-06 2016-10-05 116 ENSG00000141433 OTTHUMG00000131479 uc010dkh.5 S83513 NM_001117 CCDS11825 P18509 1730060 MGI:105094 RGD:2037 ADCYAP1 102980 +HGNC:242 ADCYAP1R1 ADCYAP receptor type I protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "PAC1|PACAPR|PAC1R" PACAP receptor 1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I Vasoactive intestinal peptide receptor family 264 1994-05-18 2016-03-14 2016-03-14 117 ENSG00000078549 OTTHUMG00000023884 uc003tca.3 NM_001118 "CCDS5433|CCDS56480|CCDS56481" P41586 7902709 MGI:108449 RGD:2038 ADCYAP1R1 102981 objectId:370 +HGNC:243 ADD1 adducin 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 alpha-adducin adducin 1 (alpha) 1992-10-19 2015-11-23 2015-11-23 118 ENSG00000087274 OTTHUMG00000122080 uc003gfq.4 L07261 NM_014189 "CCDS3363|CCDS3364|CCDS43205|CCDS75094" P35611 1840603 MGI:87918 RGD:2041 ADD1 102680 +HGNC:244 ADD2 adducin 2 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 ADDB beta-adducin adducin 2 (beta) 1992-10-19 2015-11-23 2015-11-23 119 ENSG00000075340 OTTHUMG00000129710 uc061kjo.1 X58199 NM_001617 "CCDS1906|CCDS1909|CCDS46318|CCDS54365" P35612 1840603 MGI:87919 RGD:2042 ADD2 102681 +HGNC:245 ADD3 adducin 3 protein-coding gene gene with protein product Approved 10q25.1-q25.2 10q25.1-q25.2 gamma-adducin ADDL adducin 3 (gamma) 1997-04-10 2015-11-23 2016-10-11 120 ENSG00000148700 OTTHUMG00000019032 uc001kyv.4 U37122 NM_019903 "CCDS7561|CCDS7562" Q9UEY8 8893809 MGI:1351615 RGD:2043 ADD3 601568 394916 +HGNC:48682 ADD3-AS1 ADD3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q25.1 10q25.1 2013-06-06 2016-09-26 100505933 ENSG00000203876 OTTHUMG00000019028 NR_038943 +HGNC:247 ADFN albinism-deafness syndrome phenotype phenotype only Approved Xq26.3-q27.1 Xq26.3-q27.1 1986-01-01 2006-02-02 122 "5801459|2349949" 300700 +HGNC:21212 ADGB androglobin protein-coding gene gene with protein product Approved 6q24.3 06q24.3 "FLJ23121|dJ408K24.1|CAPN16" C6orf103 chromosome 6 open reading frame 103 Calpains 975 2003-11-25 2012-02-03 2012-02-03 2016-10-05 79747 ENSG00000118492 OTTHUMG00000015758 uc010khx.4 AK026774 NM_024694 Q8N7X0 22115833 MGI:3605549 RGD:1564259 ADGB 614630 C02.972 +HGNC:13838 ADGRA1 adhesion G protein-coupled receptor A1 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 KIAA1828 GPR123 G protein-coupled receptor 123 Adhesion G protein-coupled receptors, subfamily A 911 2003-02-25 2015-03-03 2015-03-03 2016-10-05 84435 ENSG00000197177 OTTHUMG00000019304 AB058731 XM_017016779 "CCDS41580|CCDS76362" Q86SQ6 "12565841|25713288" MGI:1277167 RGD:1308241 612302 objectId:197 +HGNC:49543 ADGRA1-AS1 adhesion G protein-coupled receptor A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 GPR123-AS1 GPR123 antisense RNA 1 2014-01-10 2015-03-03 2015-03-03 2015-03-03 100128127 ENSG00000256925 OTTHUMG00000019301 NR_111905 +HGNC:17849 ADGRA2 adhesion G protein-coupled receptor A2 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "TEM5|DKFZp434C211|DKFZp434J0911|KIAA1531|FLJ14390" tumor endothelial marker 5 GPR124 G protein-coupled receptor 124 "Immunoglobulin like domain containing|Adhesion G protein-coupled receptors, subfamily A" "594|911" 2003-02-25 2015-03-03 2015-03-03 2016-10-05 25960 ENSG00000020181 OTTHUMG00000156182 AB040964 XM_011544481 CCDS6097 Q96PE1 "11559528|12565841|25713288" MGI:1925810 RGD:2323365 606823 objectId:198 +HGNC:13839 ADGRA3 adhesion G protein-coupled receptor A3 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "FLJ38547|PGR21" GPR125 G protein-coupled receptor 125 "I-set domain containing|Adhesion G protein-coupled receptors, subfamily A" "593|911" 2003-02-25 2015-03-03 2015-03-03 2016-10-05 166647 ENSG00000152990 OTTHUMG00000160926 AK095866 XM_017007834 CCDS33964 Q8IWK6 "12565841|25713288" MGI:1917943 RGD:1304914 612303 objectId:199 +HGNC:943 ADGRB1 adhesion G protein-coupled receptor B1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 BAI1 brain-specific angiogenesis inhibitor 1 Adhesion G protein-coupled receptors, subfamily B 912 1998-06-05 2015-03-03 2015-03-03 2015-09-11 575 ENSG00000181790 OTTHUMG00000164732 AB005297 NM_001702 CCDS64985 O14514 "9533023|25713288" MGI:1933736 RGD:1305608 602682 objectId:174 +HGNC:944 ADGRB2 adhesion G protein-coupled receptor B2 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 BAI2 brain-specific angiogenesis inhibitor 2 Adhesion G protein-coupled receptors, subfamily B 912 1998-06-05 2015-03-03 2015-03-03 2016-10-05 576 ENSG00000121753 OTTHUMG00000003885 AB005298 NM_001703 "CCDS72746|CCDS72747" O60241 "9533023|25713288" MGI:2451244 RGD:1309431 602683 objectId:175 +HGNC:945 ADGRB3 adhesion G protein-coupled receptor B3 protein-coding gene gene with protein product Approved 6q12-q13 06q12-q13 KIAA0550 BAI3 brain-specific angiogenesis inhibitor 3 Adhesion G protein-coupled receptors, subfamily B 912 1998-06-05 2015-03-03 2015-03-03 2016-10-11 577 ENSG00000135298 OTTHUMG00000014982 AB005299 XM_006715534 CCDS4968 O60242 "9533023|25713288" MGI:2441837 RGD:1309703 602684 P02.027 objectId:176 +HGNC:19893 ADGRD1 adhesion G protein-coupled receptor D1 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "DKFZp434B1272|PGR25" GPR133 G protein-coupled receptor 133 Adhesion G protein-coupled receptors, subfamily D 914 2003-11-26 2015-03-03 2015-03-03 2015-03-03 283383 ENSG00000111452 OTTHUMG00000168339 AY278561 NM_198827 "CCDS9272|CCDS81753" Q6QNK2 25713288 MGI:3041203 RGD:1594795 613639 P02.021 objectId:202 +HGNC:18651 ADGRD2 adhesion G protein-coupled receptor D2 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 PGR24 GPR144 G protein-coupled receptor 144 Adhesion G protein-coupled receptors, subfamily D 914 2003-11-26 2015-03-03 2015-03-03 2016-10-05 347088 ENSG00000180264 OTTHUMG00000020652 AY278562 NM_182611 Q7Z7M1 25713288 P02.015 objectId:204 +HGNC:3336 ADGRE1 adhesion G protein-coupled receptor E1 protein-coding gene gene with protein product Approved 19p13.3-p13.2 19p13.3-p13.2 "TM7LN3|EMR1" "egf-like module containing, mucin-like, hormone receptor-like sequence 1|egf-like module containing, mucin-like, hormone receptor-like 1" Adhesion G protein-coupled receptors, subfamily E 915 1994-08-31 2015-03-03 2015-03-03 2016-10-11 2015 ENSG00000174837 OTTHUMG00000181966 X81479 NM_001974 "CCDS12175|CCDS58643|CCDS58644|CCDS58645|CCDS58646" Q14246 "7601460|9500513|25713288" MGI:106912 RGD:1359214 600493 P02.004 objectId:182 +HGNC:3337 ADGRE2 adhesion G protein-coupled receptor E2 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 CD312 EMR2 "egf-like module containing, mucin-like, hormone receptor-like sequence 2|egf-like module containing, mucin-like, hormone receptor-like 2" "CD molecules|Adhesion G protein-coupled receptors, subfamily E" "471|915" 2000-03-14 2015-03-03 2015-03-03 2015-08-28 30817 ENSG00000127507 OTTHUMG00000183408 AF114491 XM_011527948 "CCDS32935|CCDS59361" Q9UHX3 25713288 606100 P02.001 objectId:183 CD312 +HGNC:23647 ADGRE3 adhesion G protein-coupled receptor E3 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 EMR3 egf-like module containing, mucin-like, hormone receptor-like 3 Adhesion G protein-coupled receptors, subfamily E 915 2003-11-26 2015-03-03 2015-03-03 2015-08-28 84658 ENSG00000131355 OTTHUMG00000183406 AF239764 NM_032571 "CCDS12315|CCDS74296|CCDS74297" Q9BY15 "11279179|12975309|25713288" 606101 P02.003 objectId:184 +HGNC:19240 ADGRE4P adhesion G protein-coupled receptor E4, pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 PGR16 "GPR127|EMR4|EMR4P" "G protein-coupled receptor 127|egf-like module containing, mucin-like, hormone receptor-like 4|egf-like module containing, mucin-like, hormone receptor-like 4 pseudogene" Adhesion G protein-coupled receptors, subfamily E 915 2003-02-25 2015-03-03 2015-03-03 2015-03-03 326342 ENSG00000268758 OTTHUMG00000177251 AY181245 NR_024075 Q86SQ3 "12565841|25713288" MGI:1196464 RGD:1359641 612305 PGOHUM00000259297 P02.005 objectId:185 +HGNC:1711 ADGRE5 adhesion G protein-coupled receptor E5 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 TM7LN1 "leukocyte antigen CD97|seven-span transmembrane protein|seven-transmembrane, heterodimeric receptor associated with inflammation|seven transmembrane helix receptor" CD97 "CD97 antigen|CD97 molecule" "CD molecules|Adhesion G protein-coupled receptors, subfamily E" "471|915" 1995-11-29 2015-03-03 2015-03-03 2015-03-03 976 ENSG00000123146 OTTHUMG00000182166 NM_078481 "CCDS32929|CCDS32930|CCDS32931" P48960 "7636245|8786105|25713288" MGI:1347095 RGD:1305595 601211 P02.002 objectId:177 CD97 +HGNC:18990 ADGRF1 adhesion G protein-coupled receptor F1 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "hGPCR36|PGR19" GPR110 G protein-coupled receptor 110 Adhesion G protein-coupled receptors, subfamily F 916 2002-11-26 2015-03-03 2015-03-03 2016-10-05 266977 ENSG00000153292 OTTHUMG00000014795 AB083618 NM_153840 "CCDS4920|CCDS34471" Q5T601 "12435584|14623098|25713288" MGI:1924846 RGD:1310285 P02.022 objectId:190 +HGNC:18991 ADGRF2 adhesion G protein-coupled receptor F2 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "hGPCR35|PGR20" GPR111 G protein-coupled receptor 111 Adhesion G protein-coupled receptors, subfamily F 916 2002-11-26 2015-03-03 2015-03-03 2015-03-03 222611 ENSG00000164393 OTTHUMG00000046168 AB065684 NM_153839 Q8IZF7 "12435584|25713288" MGI:2182728 RGD:1306718 objectId:191 +HGNC:18989 ADGRF3 adhesion G protein-coupled receptor F3 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "hGPCR37|PGR23" GPR113 G protein-coupled receptor 113 Adhesion G protein-coupled receptors, subfamily F 916 2002-11-26 2015-03-03 2015-03-03 2016-10-05 165082 ENSG00000173567 OTTHUMG00000150225 AB083619 NM_153835 "CCDS33159|CCDS46238|CCDS46239" Q8IZF5 "12435584|25713288" MGI:2685887 RGD:1305868 P02.028 objectId:193 +HGNC:19011 ADGRF4 adhesion G protein-coupled receptor F4 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "FLJ38076|PGR18" GPR115 G protein-coupled receptor 115 Adhesion G protein-coupled receptors, subfamily F 916 2002-11-26 2015-03-03 2015-03-03 2015-03-03 221393 ENSG00000153294 OTTHUMG00000014800 AK095395 NM_153838 CCDS4922 Q8IZF3 "12435584|25713288" MGI:1925499 RGD:1565216 614268 objectId:195 +HGNC:19030 ADGRF5 adhesion G protein-coupled receptor F5 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "DKFZp564O1923|KIAA0758" GPR116 G protein-coupled receptor 116 "I-set domain containing|Immunoglobulin like domain containing|Adhesion G protein-coupled receptors, subfamily F" "593|594|916" 2002-11-26 2015-03-03 2015-03-03 2015-03-03 221395 ENSG00000069122 OTTHUMG00000014793 AB018301 NM_015234 CCDS4919 Q8IZF2 "12435584|25713288" MGI:2182928 RGD:621679 P02.019 objectId:196 +HGNC:32922 ADGRF5P1 adhesion G protein-coupled receptor F5 pseudogene 1 pseudogene pseudogene Approved 9q13 09q13 GPR116P1 G protein-coupled receptor 116 pseudogene 1 2006-05-26 2015-03-03 2015-03-03 2015-03-03 389740 ENSG00000227582 OTTHUMG00000058166 NG_021620 PGOHUM00000303863 +HGNC:32921 ADGRF5P2 adhesion G protein-coupled receptor F5 pseudogene 2 pseudogene pseudogene Approved 9p11.1 09p11.1 GPR116P2 G protein-coupled receptor 116 pseudogene 2 2006-05-26 2015-03-03 2015-03-03 2015-03-03 441416 ENSG00000204818 OTTHUMG00000013558 NG_021616 PGOHUM00000304223 +HGNC:4512 ADGRG1 adhesion G protein-coupled receptor G1 protein-coding gene gene with protein product Approved 16q21 16q21 "TM7LN4|TM7XN1" GPR56 G protein-coupled receptor 56 Adhesion G protein-coupled receptors, subfamily G 917 1998-10-12 2015-03-03 2015-03-03 2015-03-03 9289 ENSG00000205336 OTTHUMG00000176742 AJ011001 XM_005256238 "CCDS32460|CCDS32461|CCDS73893" Q9Y653 "10049584|10100861|25713288" MGI:1340051 RGD:628617 604110 122266 objectId:186 +HGNC:4516 ADGRG2 adhesion G protein-coupled receptor G2 protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 "HE6|TM7LN2|EDDM6" epididymal protein 6 GPR64 G protein-coupled receptor 64 Adhesion G protein-coupled receptors, subfamily G 917 1999-10-22 2015-03-03 2015-03-03 2015-03-03 10149 ENSG00000173698 OTTHUMG00000021223 X81892 XM_006724455 "CCDS14191|CCDS43921|CCDS43922|CCDS43923|CCDS55376|CCDS55377|CCDS55378|CCDS55379" Q8IZP9 "9739419|9150425|25713288" MGI:2446854 RGD:628618 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPR64 300572 objectId:187 +HGNC:13728 ADGRG3 adhesion G protein-coupled receptor G3 protein-coding gene gene with protein product Approved 16q21 16q21 "Pb99|PGR26" GPR97 G protein-coupled receptor 97 Adhesion G protein-coupled receptors, subfamily G 917 2000-10-20 2015-03-03 2015-03-03 2016-10-05 222487 ENSG00000182885 OTTHUMG00000133458 AY140959 NM_170776 "CCDS10786|CCDS76879" Q86Y34 "12435584|25713288" MGI:1859670 RGD:1305674 P02.023 objectId:188 +HGNC:18992 ADGRG4 adhesion G protein-coupled receptor G4 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "RP1-299I16|PGR17" GPR112 G protein-coupled receptor 112 Adhesion G protein-coupled receptors, subfamily G 917 2002-11-26 2015-03-03 2015-03-03 2015-03-03 139378 ENSG00000156920 OTTHUMG00000022508 AY140954 XM_011531269 CCDS35409 Q8IZF6 "12435584|25713288" MGI:2685213 RGD:1564057 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPR112 P02.014 objectId:192 +HGNC:19010 ADGRG5 adhesion G protein-coupled receptor G5 protein-coding gene gene with protein product Approved 16q21 16q21 PGR27 GPR114 G protein-coupled receptor 114 Adhesion G protein-coupled receptors, subfamily G 917 2002-11-26 2015-03-03 2015-03-03 2016-10-05 221188 ENSG00000159618 OTTHUMG00000133461 AY140956 NM_153837 CCDS10785 Q8IZF4 "12435584|25713288" MGI:2685955 RGD:1305559 616965 P02.016 objectId:194 +HGNC:13841 ADGRG6 adhesion G protein-coupled receptor G6 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 FLJ14937 GPR126 G protein-coupled receptor 126 Adhesion G protein-coupled receptors, subfamily G 917 2003-02-25 2015-03-03 2015-03-03 2015-08-10 57211 ENSG00000112414 OTTHUMG00000015709 AK027843 XM_005267061 "CCDS47489|CCDS47490|CCDS47491|CCDS55064" Q86SQ4 "12565841|25118328|25713288" MGI:1916151 RGD:1308551 612243 P02.017 objectId:200 +HGNC:19241 ADGRG7 adhesion G protein-coupled receptor G7 protein-coding gene gene with protein product Approved 3q12.2 03q12.2 FLJ14454 GPR128 G protein-coupled receptor 128 Adhesion G protein-coupled receptors, subfamily G 917 2003-02-25 2015-03-03 2015-03-03 2016-10-05 84873 ENSG00000144820 OTTHUMG00000159083 AK027360 XM_011513245 "CCDS2938|CCDS77778" Q96K78 25713288 MGI:2441732 RGD:1307217 612307 objectId:201 +HGNC:20973 ADGRL1 adhesion G protein-coupled receptor L1 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "KIAA0821|CIRL1|LEC2" LPHN1 latrophilin 1 Adhesion G protein-coupled receptors, subfamily L 918 2003-04-25 2015-03-03 2015-03-03 2016-10-05 22859 ENSG00000072071 OTTHUMG00000182138 AB020628 NM_014921 "CCDS12307|CCDS32928" O94910 "10994649|25713288" MGI:1929461 RGD:620768 616416 P02.010 objectId:206 +HGNC:18582 ADGRL2 adhesion G protein-coupled receptor L2 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "KIAA0786|LEC1" "LPHH1|LPHN2" "latrophilin 1|latrophilin 2" Adhesion G protein-coupled receptors, subfamily L 918 2002-04-26 2015-03-03 2015-03-03 2015-09-11 23266 ENSG00000117114 OTTHUMG00000009844 AJ131581 NM_012302 "CCDS689|CCDS72811|CCDS76174|CCDS81345" O95490 "10760572|25713288" MGI:2139714 RGD:620835 607018 objectId:207 +HGNC:20974 ADGRL3 adhesion G protein-coupled receptor L3 protein-coding gene gene with protein product Approved 4q13.1 04q13.1 "KIAA0768|LEC3" LPHN3 latrophilin 3 Adhesion G protein-coupled receptors, subfamily L 918 2003-04-25 2015-03-03 2015-03-03 2015-03-03 23284 ENSG00000150471 OTTHUMG00000160690 AB018311 NM_001322402 "CCDS54768|CCDS82926" Q9HAR2 "10994649|25713288" MGI:2441950 RGD:620836 616417 P02.011 objectId:208 +HGNC:50604 ADGRL3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q13.1 04q13.1 LPHN3-AS1 LPHN3 antisense RNA 1 2014-05-22 2015-03-03 2015-03-03 2015-03-03 101927186 ENSG00000248692 OTTHUMG00000160691 NR_110595 +HGNC:20822 ADGRL4 adhesion G protein-coupled receptor L4 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 ETL ELTD1 EGF, latrophilin and seven transmembrane domain containing 1 Adhesion G protein-coupled receptors, subfamily L 918 2003-04-29 2015-03-03 2015-03-03 2016-10-05 64123 ENSG00000162618 OTTHUMG00000009738 AF192403 NM_022159 CCDS41352 Q9HBW9 "11050079|25713288" MGI:2655562 RGD:621136 616419 P02.013 objectId:181 +HGNC:17416 ADGRV1 adhesion G protein-coupled receptor V1 protein-coding gene gene with protein product Approved 5q14.3 05q14.3 "DKFZp761P0710|KIAA0686|FEB4|VLGR1" "USH2C|MASS1|GPR98" "monogenic, audiogenic seizure susceptibility 1 homolog (mouse)|G protein-coupled receptor 98" "Adhesion G protein-coupled receptors, subfamily V|USH2 complex " "919|1244" 2002-09-17 2015-03-03 2015-03-03 2016-10-12 84059 ENSG00000164199 OTTHUMG00000162668 AB014586 NM_032119 CCDS47246 Q8WXG9 "10976914|14740321|25713288" MGI:1274784 RGD:1562101 LRG_1095|http://www.lrg-sequence.org/LRG/LRG_1095 602851 122270 objectId:189 +HGNC:249 ADH1A alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding gene gene with protein product Approved 4q23 04q23 ADH1 Alcohol dehydrogenases 397 1986-01-01 2015-08-27 124 ENSG00000187758 OTTHUMG00000131026 uc003hur.3 M12963 NM_000667 CCDS3648 P07327 3006456 MGI:87921 ADH1A 103700 1.1.1.1 +HGNC:250 ADH1B alcohol dehydrogenase 1B (class I), beta polypeptide protein-coding gene gene with protein product Approved 4q23 04q23 ADH2 Alcohol dehydrogenases 397 1986-01-01 2007-11-06 2015-08-27 125 ENSG00000196616 OTTHUMG00000161413 uc003hus.6 AF153821 NM_000668 "CCDS34033|CCDS68761" P00325 3006456 MGI:87921 ADH1B 103720 1.1.1.1 +HGNC:251 ADH1C alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding gene gene with protein product Approved 4q23 04q23 ADH3 Alcohol dehydrogenases 397 1986-01-01 2015-08-27 126 ENSG00000248144 OTTHUMG00000161422 uc032trd.2 M12272 NM_000669 CCDS54780 P00326 3006456 MGI:87921 RGD:2044 103730 1.1.1.1 +HGNC:252 ADH4 alcohol dehydrogenase 4 (class II), pi polypeptide protein-coding gene gene with protein product Approved 4q23 04q23 ADH-2 Alcohol dehydrogenases 397 1989-05-19 2015-10-15 127 ENSG00000198099 OTTHUMG00000161227 uc003hun.4 M15943 NM_000670 "CCDS34032|CCDS77942" P08319 MGI:1349472 RGD:71028 ADH4 103740 1.1.1.1 +HGNC:253 ADH5 alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding gene gene with protein product Approved 4q23 04q23 "ADH-3|ADHX|GSNOR" S-nitrosoglutathione reductase FDH formaldehyde dehydrogenase Alcohol dehydrogenases 397 1986-01-01 2003-06-19 2016-09-13 128 ENSG00000197894 OTTHUMG00000161230 uc003hui.5 M29872 NM_000671 CCDS47111 P11766 "1446828|6424546" MGI:87929 RGD:2292706 ADH5 103710 1.1.1.284 +HGNC:254 ADH5P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-10 +HGNC:22976 ADH5P2 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 2 pseudogene pseudogene Approved 1p31.1 01p31.1 2003-08-13 2014-11-19 343296 ENSG00000232676 OTTHUMG00000009701 NG_008685 +HGNC:22991 ADH5P3 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 3 pseudogene pseudogene Approved 1q43 01q43 2003-08-13 2014-11-18 100131810 ENSG00000223694 OTTHUMG00000039885 NG_008686 +HGNC:21377 ADH5P4 alcohol dehydrogenase 5 (class III), chi polypeptide, pseudogene 4 pseudogene pseudogene Approved 6q12 06q12 bA707M13.2 ADH5B alcohol dehydrogenase 5B 2003-11-26 2005-05-19 2005-05-19 2014-11-19 642443 ENSG00000233859 OTTHUMG00000014976 AL391500 XM_208352 +HGNC:255 ADH6 alcohol dehydrogenase 6 (class V) protein-coding gene gene with protein product Approved 4q23 04q23 ADH-5 Alcohol dehydrogenases 397 1992-04-07 2015-08-28 130 ENSG00000172955 OTTHUMG00000131024 uc003hup.5 AK092768 NM_000672 "CCDS3647|CCDS43255" P28332 1881901 ADH6 103735 1.1.1.1 +HGNC:256 ADH7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding gene gene with protein product Approved 4q23 04q23 ADH-4 Alcohol dehydrogenases 397 1995-03-23 2016-10-05 131 ENSG00000196344 OTTHUMG00000159318 uc062ylg.1 X76342 NM_000673 "CCDS34034|CCDS54781" P40394 8195208 MGI:87926 RGD:621638 ADH7 600086 1.1.1.1 +HGNC:16354 ADHFE1 alcohol dehydrogenase, iron containing 1 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 "ADHFe1|FLJ32430" hydroxyacid-oxoacid transhydrogenase Alcohol dehydrogenases 397 2003-10-09 2015-11-13 2016-10-05 137872 ENSG00000147576 OTTHUMG00000150215 uc003xwb.5 AK056992 NM_144650 CCDS6190 Q8IWW8 12592711 MGI:1923437 RGD:1308863 ADHFE1 611083 1.1.99.24 +HGNC:30576 ADI1 acireductone dioxygenase 1 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 "SIPL|MTCBP-1|ARD|APL1|FLJ10913|HMFT1638|mtnD" membrane-type 1 matrix metalloproteinase cytoplasmic tail binding protein-1 2006-02-09 2016-10-05 55256 ENSG00000182551 OTTHUMG00000112441 uc002qxp.5 NM_018269 "CCDS1653|CCDS77380" Q9BV57 "14718544|15938715" MGI:2144929 RGD:727828 ADI1 613400 1.13.11.54 +HGNC:52339 ADI1P1 acireductone dioxygenase 1 pseudogene 1 pseudogene pseudogene Approved 20q12 20q12 2016-07-25 2016-07-25 100130936 ENSG00000235102 OTTHUMG00000032482 NG_007499 PGOHUM00000297120 +HGNC:52340 ADI1P2 acireductone dioxygenase 1 pseudogene 2 pseudogene pseudogene Approved 8q22.3 08q22.3 2016-07-25 2016-07-25 100288971 ENSG00000250684 OTTHUMG00000160496 NG_021206 PGOHUM00000306607 +HGNC:52341 ADI1P3 acireductone dioxygenase 1 pseudogene 3 pseudogene pseudogene Approved 12q13.11 12q13.11 2016-07-25 2016-07-25 100288129 ENSG00000258369 OTTHUMG00000169665 NG_021715 PGOHUM00000306528 +HGNC:28606 ADIG adipogenin protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "MGC39724|SMAF1|RP5-1100H13.2" small adipocyte factor 1 adipogenesis associated 2007-03-29 2007-03-29 2014-02-12 149685 ENSG00000182035 OTTHUMG00000032451 uc002xjb.1 BC029594 NM_001018082 CCDS54461 Q0VDE8 "15567149|16132694" MGI:2675492 RGD:6494393 ADIG 611396 +HGNC:13633 ADIPOQ adiponectin, C1Q and collagen domain containing protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "ACRP30|AdipoQ|apM1|GBP28|adiponectin" "adipose most abundant gene transcript 1|adiponectin precursor" ACDC adipocyte, C1Q and collagen domain containing Endogenous ligands 542 2004-02-26 2005-01-27 2005-01-24 2016-10-05 9370 ENSG00000181092 OTTHUMG00000156521 uc003fra.4 D45371 NM_004797 CCDS3284 Q15848 "7592907|8631877" MGI:106675 RGD:628748 ADIPOQ 605441 +HGNC:40648 ADIPOQ-AS1 ADIPOQ antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.3 03q27.3 ADIPOQ antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874095 ENSG00000226482 OTTHUMG00000156514 uc031sct.2 NR_046662 +HGNC:24040 ADIPOR1 adiponectin receptor 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "PAQR1|ACDCR1" "Adiponectin receptors|Progestin and adipoQ receptor family" "293|930" 2004-06-23 2014-11-19 51094 ENSG00000159346 OTTHUMG00000041391 uc001gyq.7 NM_015999 CCDS1430 Q96A54 12802337 MGI:1919924 RGD:1303151 ADIPOR1 607945 objectId:649 +HGNC:44910 ADIPOR1P1 adiponectin receptor 1 pseudogene 1 pseudogene pseudogene Approved 10p12.31 10p12.31 2012-12-18 2012-12-18 645220 ENSG00000232497 OTTHUMG00000017804 NG_022165 PGOHUM00000238696 +HGNC:44911 ADIPOR1P2 adiponectin receptor 1 pseudogene 2 pseudogene pseudogene Approved 14q32.13 14q32.13 2012-12-18 2012-12-18 390503 ENSG00000258805 OTTHUMG00000170861 NG_022863 PGOHUM00000248258 +HGNC:24041 ADIPOR2 adiponectin receptor 2 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "PAQR2|ACDCR2" "Adiponectin receptors|Progestin and adipoQ receptor family" "293|930" 2004-06-23 2016-10-05 79602 ENSG00000006831 OTTHUMG00000130139 uc001qjm.4 AY424280 NM_024551 CCDS8511 Q86V24 12802337 MGI:93830 RGD:1307891 ADIPOR2 607946 objectId:650 +HGNC:24043 ADIRF adipogenesis regulatory factor protein-coding gene gene with protein product Approved 10q23.2 10q23.2 "APM2|AFRO" "adipose specific 2|adipose most abundant gene transcript 2|adipogenesis factor rich in obesity" C10orf116 chromosome 10 open reading frame 116 2004-04-20 2013-02-20 2013-02-20 2016-10-05 10974 ENSG00000148671 OTTHUMG00000018668 uc001ked.3 BC004471 NM_006829 CCDS7381 Q15847 "8619847|23239344" +HGNC:45127 ADIRF-AS1 ADIRF antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.2 10q23.2 2013-02-20 2015-01-29 100133190 ENSG00000272734 OTTHUMG00000185998 uc057uqy.1 AK128041 +HGNC:257 ADK adenosine kinase protein-coding gene gene with protein product Approved 10q22.2 10q22.2 AK adenosine 5'-phosphotransferase 1986-01-01 2014-11-19 132 ENSG00000156110 OTTHUMG00000018506 uc001jwi.4 U50196 "NM_001123|NM_006721" "CCDS7343|CCDS7344|CCDS55716|CCDS55717" P55263 8577746 MGI:87930 RGD:2046 ADK 102750 289298 objectId:1231 2.7.1.20 +HGNC:259 ADM adrenomedullin protein-coding gene gene with protein product Approved 11p15.4 11p15.4 AM Endogenous ligands 542 1994-12-15 2015-08-24 133 ENSG00000148926 OTTHUMG00000165907 uc001mil.2 D14874 NM_001124 CCDS7801 P35318 7688224 MGI:108058 RGD:2047 ADM 103275 +HGNC:28898 ADM2 adrenomedullin 2 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "AM2|FLJ21135" Endogenous ligands 542 2004-02-04 2014-11-19 79924 ENSG00000128165 OTTHUMG00000150202 uc003blj.4 AF529213 NM_024866 CCDS33682 Q7Z4H4 14706825 MGI:2675256 RGD:1302971 ADM2 608682 +HGNC:27293 ADM5 adrenomedullin 5 (putative) protein-coding gene gene with protein product Approved 19q13.33 19q13.33 AM5 C19orf76 "chromosome 19 open reading frame 76|adrenomedullin 5 homolog (pig)" 2009-09-22 2012-10-29 2012-12-07 2012-12-07 199800 ENSG00000224420 uc002pph.3 BC032764 NM_001101340 CCDS46146 C9JUS6 18434369 +HGNC:15766 ADNP activity dependent neuroprotector homeobox protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "KIAA0784|ADNP1" ADNP homeobox 1 activity-dependent neuroprotector ZF class homeoboxes and pseudogenes 529 2001-05-31 2016-06-08 2016-06-08 23394 ENSG00000101126 OTTHUMG00000032737 uc002xvt.3 AF250860 NM_181442 CCDS13433 Q9H2P0 "9872452|11013255" MGI:1338758 RGD:71030 ADNP 611386 8666 406010 +HGNC:51227 ADNP-AS1 ADNP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-08-08 2014-08-08 101927631 ENSG00000259456 OTTHUMG00000172534 NR_110009 +HGNC:23803 ADNP2 ADNP homeobox 2 protein-coding gene gene with protein product Approved 18q23 18q23 KIAA0863 ZNF508 zinc finger protein 508 "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 2006-06-30 2007-07-17 2007-07-17 2014-11-19 22850 ENSG00000101544 OTTHUMG00000172535 uc032hie.2 AB020670 NM_014913 CCDS32853 Q6IQ32 MGI:2448562 RGD:1308279 ADNP2 8560 +HGNC:23506 ADO 2-aminoethanethiol dioxygenase protein-coding gene gene with protein product Approved 10q21.3 10q21.3 FLJ14547 cysteamine dioxygenase C10orf22 "chromosome 10 open reading frame 22|2-aminoethanethiol (cysteamine) dioxygenase" 2003-11-21 2007-08-28 2016-06-03 2016-06-03 84890 ENSG00000181915 OTTHUMG00000018306 uc001jmg.4 BC028589 NM_032804 CCDS7266 Q96SZ5 17581819 MGI:2685083 RGD:1308233 ADO 611392 1.13.11.19 +HGNC:262 ADORA1 adenosine A1 receptor protein-coding gene gene with protein product Approved 1q32.1 01q32.1 RDC7 Adenosine receptors 211 1991-03-11 2014-11-19 134 ENSG00000163485 OTTHUMG00000042125 uc057onx.1 BC026340 NM_000674 CCDS1434 P30542 "1662665|2541503" MGI:99401 RGD:2048 ADORA1 102775 objectId:18 +HGNC:263 ADORA2A adenosine A2a receptor protein-coding gene gene with protein product Approved 22q11.23 22q11.23 RDC8 ADORA2 Adenosine receptors 211 1991-03-11 2014-11-19 135 ENSG00000128271 OTTHUMG00000150761 uc002zzy.6 X68486 NM_000675 CCDS13826 P29274 "1662665|2541503" MGI:99402 RGD:2049 ADORA2A 102776 365126 objectId:19 +HGNC:37122 ADORA2A-AS1 ADORA2A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q11.23 22q11.23 FLJ34651 C22orf45 chromosome 22 open reading frame 45 2009-08-15 2012-10-11 2012-10-11 2012-10-12 646023 ENSG00000178803 OTTHUMG00000150735 uc062cjs.1 AK091970 NR_028483 P86434 19726446 ADORA2A-AS1 +HGNC:264 ADORA2B adenosine A2b receptor protein-coding gene gene with protein product Approved 17p12 17p12 Adenosine receptors 211 1993-01-19 2015-08-24 136 ENSG00000170425 OTTHUMG00000059140 uc002gpd.2 M97759 XM_017024197 CCDS11173 P29275 7558011 MGI:99403 RGD:2050 ADORA2B 600446 objectId:20 +HGNC:265 ADORA2BP1 adenosine A2b receptor pseudogene 1 pseudogene pseudogene Approved 1q32.2 01q32.2 ADORA2BP adenosine A2b receptor pseudogene 1995-08-29 2010-01-12 2010-01-12 2014-02-13 137 ENSG00000236136 OTTHUMG00000036482 NG_000843 7558011 PGOHUM00000245194 +HGNC:266 ADORA2L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:267 ADORA2L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:268 ADORA3 adenosine A3 receptor protein-coding gene gene with protein product Approved 1p13.2 01p13.2 AD026 "Adenosine receptors|V-set domain containing" "211|590" 1993-12-13 2016-10-12 140 ENSG00000282608 OTTHUMG00000011957 uc001ebh.5 BC029831 "NM_000677|NM_020683" "CCDS838|CCDS839|CCDS41369|CCDS81358" P0DMS8 7607699 MGI:104847 RGD:2051 LRG_424|http://www.lrg-sequence.org/LRG/LRG_424 ADORA3 600445 objectId:21 +HGNC:25250 ADPGK ADP dependent glucokinase protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "DKFZp434B195|ADP-GK" 2004-09-29 2016-06-08 2016-06-08 83440 ENSG00000159322 OTTHUMG00000172777 uc002avf.5 AL136873 NM_031284 CCDS42057 Q9BRR6 11230166 MGI:1919391 RGD:1306103 ADPGK 611861 +HGNC:44144 ADPGK-AS1 ADPGK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q24.1 15q24.1 ADPGK antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100287559 ENSG00000260898 OTTHUMG00000173100 uc002avk.1 AK127877 NR_040107 +HGNC:269 ADPRH ADP-ribosylarginine hydrolase protein-coding gene gene with protein product Approved 3q13.33 03q13.33 ARH1 [Protein ADP-ribosylarginine] hydrolase 1997-06-20 2016-10-05 141 ENSG00000144843 OTTHUMG00000159420 uc062mux.1 L13291 NM_001125 CCDS2990 P54922 "8349667|12070318" MGI:1098234 RGD:2052 ADPRH 603081 3.2.2.19 +HGNC:21303 ADPRHL1 ADP-ribosylhydrolase like 1 protein-coding gene gene with protein product Approved 13q34 13q34 ARH2 ADP-ribosylarginine hydrolase like 1 2003-06-19 2016-06-02 113622 ENSG00000153531 OTTHUMG00000017386 uc001vtq.3 AJ313429 NM_138430 "CCDS9535|CCDS9536" Q8NDY3 "12070318|27217161" MGI:2442168 RGD:1305641 ADPRHL1 610620 +HGNC:21304 ADPRHL2 ADP-ribosylhydrolase like 2 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "ARH3|FLJ20446" ADP-ribosylarginine hydrolase like 2 2003-06-19 2016-06-02 54936 ENSG00000116863 OTTHUMG00000007628 uc001bzt.4 AJ427295 NM_017825 CCDS402 Q9NX46 "12070318|16278211" MGI:2140364 RGD:1309068 ADPRHL2 610624 +HGNC:30925 ADPRM ADP-ribose/CDP-alcohol diphosphatase, manganese dependent protein-coding gene gene with protein product Approved 17p13.1 17p13.1 MDS006 C17orf48 "chromosome 17 open reading frame 48|ADP-ribose/CDP-alcohol diphosphatase, manganese-dependent" 2005-12-13 2012-07-20 2016-03-24 2016-03-24 56985 ENSG00000170222 OTTHUMG00000130366 uc002gmt.4 BC070155 NM_020233 CCDS11159 Q3LIE5 18352857 MGI:1913608 RGD:1309906 "3.6.1.13|3.6.1.16|3.6.1.53" +HGNC:277 ADRA1A adrenoceptor alpha 1A protein-coding gene gene with protein product Approved 8p21.2 08p21.2 ADRA1L1 ADRA1C adrenergic, alpha-1A-, receptor Adrenoceptors 169 1991-08-19 2012-05-09 2014-11-19 148 ENSG00000120907 OTTHUMG00000099459 uc010lun.2 L31774 NM_033303 "CCDS6052|CCDS6053|CCDS6054|CCDS34869|CCDS83269" P35348 MGI:104773 RGD:2055 ADRA1A 104221 objectId:22 +HGNC:278 ADRA1B adrenoceptor alpha 1B protein-coding gene gene with protein product Approved 5q33.3 05q33.3 adrenergic, alpha-1B-, receptor Adrenoceptors 169 1991-06-04 2012-05-09 2015-08-24 147 ENSG00000170214 OTTHUMG00000130327 uc003lxt.2 L31773 XM_011534437 CCDS4347 P35368 MGI:104774 RGD:2054 ADRA1B 104220 objectId:23 +HGNC:280 ADRA1D adrenoceptor alpha 1D protein-coding gene gene with protein product Approved 20p13 20p13 "ADRA1R|ADRA1A|ADRA1" adrenergic, alpha-1D-, receptor Adrenoceptors 169 1990-09-10 2012-05-09 2014-11-19 146 ENSG00000171873 OTTHUMG00000031779 uc002wkr.3 U03864 NM_000678 CCDS13079 P25100 8039425 MGI:106673 RGD:62064 ADRA1D 104219 objectId:24 +HGNC:281 ADRA2A adrenoceptor alpha 2A protein-coding gene gene with protein product Approved 10q25.2 10q25.2 ADRAR "alpha-2AAR subtype C10| alpha-2A-adrenergic receptor" "ADRA2|ADRA2R" adrenergic, alpha-2A-, receptor Adrenoceptors 169 1990-09-10 2012-05-09 2015-08-24 150 ENSG00000150594 OTTHUMG00000019050 uc001kzo.4 AF284095 NM_000681 CCDS7569 P08913 MGI:87934 RGD:2056 ADRA2A 104210 objectId:25 +HGNC:282 ADRA2B adrenoceptor alpha 2B protein-coding gene gene with protein product Approved 2q11.2 02q11.2 ADRARL1 "ADRA2L1|ADRA2RL1" adrenergic, alpha-2B-, receptor Adrenoceptors 169 1990-09-10 2012-05-09 2015-08-27 151 ENSG00000274286 OTTHUMG00000188276 uc032nvj.2 M34041 NM_000682 CCDS56129 P18089 2164221 MGI:87935 RGD:2057 ADRA2B 104260 395886 objectId:26 +HGNC:283 ADRA2C adrenoceptor alpha 2C protein-coding gene gene with protein product Approved 4p16.3 04p16.3 ADRARL2 "ADRA2L2|ADRA2RL2" adrenergic, alpha-2C-, receptor Adrenoceptors 169 1986-01-01 2012-05-09 2014-11-19 152 ENSG00000184160 OTTHUMG00000159830 uc003ghm.4 AY455666 NM_000683 CCDS47004 P18825 1849485 MGI:87936 RGD:2058 ADRA2C 104250 objectId:27 +HGNC:285 ADRB1 adrenoceptor beta 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 ADRB1R adrenergic, beta-1-, receptor Adrenoceptors 169 1990-09-10 2012-05-09 2015-08-24 153 ENSG00000043591 OTTHUMG00000019079 uc001lba.4 J03019 NM_000684 CCDS7586 P08588 MGI:87937 RGD:2059 ADRB1 109630 objectId:28 +HGNC:286 ADRB2 adrenoceptor beta 2 protein-coding gene gene with protein product Approved 5q32 05q32 "ADRBR|BAR|B2AR" ADRB2R "adrenergic, beta-2-, receptor, surface|adrenoceptor beta 2, surface" Adrenoceptors 169 1990-09-10 2015-11-26 2016-10-05 154 ENSG00000169252 OTTHUMG00000129933 uc003lpr.3 AF022953 NM_000024 CCDS4292 P07550 MGI:87938 RGD:2060 ADRB2 109690 objectId:29 +HGNC:288 ADRB3 adrenoceptor beta 3 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 adrenergic, beta-3-, receptor Adrenoceptors 169 1993-10-04 2012-05-09 2015-10-15 155 ENSG00000188778 OTTHUMG00000164028 uc003xkr.3 AY487247 NM_000025 CCDS6099 P13945 "7898940|15123695" MGI:87939 RGD:2061 ADRB3 109691 objectId:30 +HGNC:15759 ADRM1 adhesion regulating molecule 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "GP110|Rpn13|ARM1" 2001-09-17 2015-09-11 11047 ENSG00000130706 OTTHUMG00000032904 uc002ycn.5 D64154 XM_017027602 "CCDS13496|CCDS74747" Q16186 8033103 MGI:1929289 RGD:69248 ADRM1 610650 +HGNC:291 ADSL adenylosuccinate lyase protein-coding gene gene with protein product Approved 22q13.1 22q13.1 1986-01-01 2014-11-18 158 ENSG00000239900 OTTHUMG00000166425 uc003ayp.5 X65867 NM_000026 "CCDS14001|CCDS46714" P30566 8404037 MGI:103202 RGD:1307617 Adenylosuccinate Lyase Mutations Database Home Page|http://www.icp.ucl.ac.be/adsldb/ ADSL 608222 119507 4.3.2.2 +HGNC:292 ADSS adenylosuccinate synthase protein-coding gene gene with protein product Approved 1q44 01q44 1989-05-19 2015-09-11 159 ENSG00000035687 OTTHUMG00000040102 uc001iaj.4 BC012356 NM_001126 CCDS1624 P30520 "2004783|1592113" MGI:87948 RGD:1310508 ADSS 103060 6.3.4.4 +HGNC:20093 ADSSL1 adenylosuccinate synthase like 1 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 FLJ38602 2002-12-17 2015-08-26 122622 ENSG00000185100 OTTHUMG00000170818 uc001ypd.5 AK095921 NM_001320424 "CCDS9990|CCDS9991" Q8N142 MGI:87947 RGD:1590342 ADSSL1 612498 +HGNC:21214 ADTRP androgen dependent TFPI regulating protein protein-coding gene gene with protein product Approved 6p24.1 06p24.1 "dJ413H6.1|AIG1L" androgen-induced 1-like C6orf105 "chromosome 6 open reading frame 105|androgen-dependent TFPI-regulating protein" 2003-11-25 2012-01-27 2016-02-24 2016-02-24 84830 ENSG00000111863 OTTHUMG00000014260 uc003nab.4 AJ420520 NM_032744 "CCDS4521|CCDS47374" Q96IZ2 21868574 MGI:1924596 RGD:1305679 ADTRP 614348 +HGNC:293 ADT entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:303 AEBP1 AE binding protein 1 protein-coding gene gene with protein product Approved 7p13 07p13 ACLP "aortic carboxypeptidase-like protein|adipocyte enhancer binding protein 1" AE-binding protein 1 1998-03-06 2001-11-28 2016-10-05 165 ENSG00000106624 OTTHUMG00000023362 uc003tkb.5 D86479 NM_001129 CCDS5476 Q8IUX7 8920928 MGI:1197012 RGD:1306922 AEBP1 602981 M14.951 objectId:1586 +HGNC:24051 AEBP2 AE binding protein 2 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 MGC17922 2004-03-18 2012-10-02 121536 ENSG00000139154 OTTHUMG00000168906 uc001ref.2 NM_153207 "CCDS44841|CCDS44842|CCDS58215" Q6ZN18 10329662 MGI:1338038 RGD:1307233 AEBP2 +HGNC:25722 AEN apoptosis enhancing nuclease protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "FLJ12484|FLJ12562" ISG20L1 interferon stimulated exonuclease gene 20kDa-like 1 Exonucleases 544 2005-06-30 2008-07-15 2008-07-15 2014-11-19 64782 ENSG00000181026 OTTHUMG00000148681 uc002bmt.3 BC020988 NM_022767 CCDS10344 Q8WTP8 "18264133|16171785" MGI:1915298 RGD:1305051 AEN 610177 +HGNC:307 AES amino-terminal enhancer of split protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "GRG5|TLE5" 1993-12-13 2015-10-15 166 ENSG00000104964 OTTHUMG00000180567 uc002lwy.2 AK094591 NM_198969 "CCDS12101|CCDS12102" Q08117 8365415 MGI:95806 RGD:2731 AES 600188 +HGNC:309 AF8T AF8 temperature sensitivity complementing phenotype phenotype only Approved 3 03 2001-06-22 2012-10-02 169 180537 116950 +HGNC:310 AFA ankyloblepharon filiforme adnatum phenotype phenotype only Approved reserved reserved 1994-01-05 2012-03-30 170 8135297 106250 +HGNC:24017 AFAP1 actin filament associated protein 1 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "AFAP-110|AFAP" Pleckstrin homology domain containing 682 2007-02-07 2007-02-07 2016-10-05 60312 ENSG00000196526 OTTHUMG00000125515 uc003gkg.2 AB209676 NM_021638 "CCDS3397|CCDS47010" Q8N556 "14755689|11641786|11607843" MGI:1917542 RGD:619959 AFAP1 608252 +HGNC:28141 AFAP1-AS1 AFAP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4p16.1 04p16.1 MGC10981 "AFAP1AS|AFAP1-AS" "AFAP1 antisense RNA (non-protein coding)|AFAP1 antisense RNA 1 (non-protein coding)" 2010-07-08 2010-11-25 2012-08-15 2013-10-11 84740 ENSG00000272620 OTTHUMG00000186238 uc003gkd.5 BC004397 NM_032654 23333711 +HGNC:26714 AFAP1L1 actin filament associated protein 1 like 1 protein-coding gene gene with protein product Approved 5q32 05q32 FLJ36748 actin filament associated protein 1-like 1 Pleckstrin homology domain containing 682 2007-02-07 2015-11-26 2016-10-05 134265 ENSG00000157510 OTTHUMG00000163441 uc003lqh.4 AK094067 NM_152406 "CCDS34274|CCDS54932" Q8TED9 MGI:2147199 RGD:1311580 AFAP1L1 614410 +HGNC:25901 AFAP1L2 actin filament associated protein 1 like 2 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "FLJ14564|Em:AC005383.4|XB130" KIAA1914 "KIAA1914|actin filament associated protein 1-like 2" Pleckstrin homology domain containing 682 2004-02-18 2007-02-07 2015-11-26 2016-10-05 84632 ENSG00000169129 OTTHUMG00000019086 uc001lbn.5 BC024314 NM_032550 "CCDS31286|CCDS31287" Q8N4X5 "11572484|17412687" MGI:2147658 RGD:1310668 AFAP1L2 612420 +HGNC:312 AFD1 acrofacial dysostosis 1, Nager type phenotype phenotype only Approved 9q32 09q32 1994-01-05 2014-02-12 171 9585434 +HGNC:7137 AFDN afadin, adherens junction formation factor protein-coding gene gene with protein product Approved 6q27 06q27 "AF-6|AF6" MLLT4 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 4 PDZ domain containing 1220 1994-09-06 2016-06-28 2016-06-28 2016-06-28 4301 ENSG00000130396 OTTHUMG00000016031 uc063sxr.1 AB011399 NM_005936 "CCDS47517|CCDS75553|CCDS78199" P55196 8242616 MGI:1314653 RGD:708561 159559 +HGNC:21236 AFDN-AS1 AFDN antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 6q27 06q27 "HGC6.4|dJ431P23.3" "C6orf124|MLLT4-AS1" "chromosome 6 open reading frame 124|MLLT4 antisense RNA 1 (non-protein coding)|MLLT4 antisense RNA 1 (head to head)" 2003-05-29 2016-06-28 2016-06-28 2016-06-28 653483 ENSG00000198221 OTTHUMG00000016029 uc003qwa.3 NR_027906 Q9Y6Z5 10382971 +HGNC:7135 AFF1 AF4/FMR2 family member 1 protein-coding gene gene with protein product Approved 4q21.3-q22.1 04q21.3-q22.1 "AF-4|AF4" "PBM1|MLLT2" "myeloid/lymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog); translocated to, 2|pre-B-cell monocytic leukemia partner 1|AF4/FMR2 family, member 1" "AF4/FMR2 family|Super elongation complex" "1145|1280" 2005-06-27 2005-06-27 2015-11-18 2016-10-11 4299 ENSG00000172493 OTTHUMG00000130603 uc003hqj.5 L22179 NM_005935 "CCDS3616|CCDS54775" P51825 "7689231|1423625|8353274" MGI:1100819 RGD:1307940 AFF1 159557 171634 +HGNC:3776 AFF2 AF4/FMR2 family member 2 protein-coding gene gene with protein product Approved Xq28 Xq28 FRAXE FMR2 "fragile X mental retardation 2|AF4/FMR2 family, member 2" "AF4/FMR2 family|Super elongation complex" "1145|1280" 2005-06-27 2005-06-27 2015-11-18 2015-11-18 2334 ENSG00000155966 OTTHUMG00000022613 uc004fcp.3 U48436 NM_002025 "CCDS14684|CCDS55521|CCDS76040|CCDS78510" P51816 MGI:1202294 RGD:1565592 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AFF2 AFF2 300806 119509 +HGNC:41334 AFF2-IT1 AFF2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved Xq28 Xq28 AFF2 intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100874269 ENSG00000223516 OTTHUMG00000022611 uc065bmd.1 +HGNC:6473 AFF3 AF4/FMR2 family member 3 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 MLLT2-like LAF4 "lymphoid nuclear protein related to AF4|AF4/FMR2 family, member 3" "AF4/FMR2 family|Super elongation complex" "1145|1280" 1998-03-27 2005-06-27 2015-11-18 2016-10-05 3899 ENSG00000144218 OTTHUMG00000153011 uc002tah.2 U34360 NM_002285 "CCDS33258|CCDS42723" P51826 "8662235|8555498" MGI:106927 RGD:1308527 AFF3 601464 +HGNC:17869 AFF4 AF4/FMR2 family member 4 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "AF5Q31|MCEF" ALL1 fused gene from 5q31 AF4/FMR2 family, member 4 "AF4/FMR2 family|Super elongation complex" "1145|1280" 2005-06-27 2015-11-18 2016-10-05 27125 ENSG00000072364 OTTHUMG00000059838 uc003kyd.4 AF197927 NM_014423 CCDS4164 Q9UHB7 10588740 MGI:2136171 RGD:1311694 AFF4 604417 448667 +HGNC:314 AFG3L1P AFG3 like matrix AAA peptidase subunit 1, pseudogene pseudogene pseudogene Approved 16q24.3 16q24.3 "AFG3|AFG3L1" "AFG3 ATPase family gene 3-like 1 (S. cerevisiae), pseudogene|AFG3 like AAA ATPase 1, pseudogene" AAA ATPases 413 1997-04-10 2010-10-28 2016-02-26 2016-02-26 172 ENSG00000223959 OTTHUMG00000138987 AJ001495 NR_003226 "9545647|11549317" MGI:1928277 603020 PGOHUM00000249187 M41.010 +HGNC:315 AFG3L2 AFG3 like matrix AAA peptidase subunit 2 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 SPAX5 SCA28 "AFG3 (ATPase family gene 3, yeast)-like 2|spinocerebellar ataxia 28|AFG3 ATPase family member 3-like 2 (S. cerevisiae)|AFG3 like AAA ATPase 2" AAA ATPases 413 1999-07-13 2016-02-26 2016-10-12 10939 ENSG00000141385 OTTHUMG00000131695 uc002kqz.3 Y18314 NM_006796 CCDS11859 Q9Y4W6 "10395799|18769991" MGI:1916847 RGD:1305259 LRG_666|http://www.lrg-sequence.org/LRG/LRG_666 AFG3L2 604581 212604 M41.007 +HGNC:24169 AFG3L2P1 AFG3 like AAA ATPase 2 pseudogene 1 pseudogene pseudogene Approved 8p11.1 08p11.1 AFG3L2P "AFG3 ATPase family gene 3-like 2 (yeast) pseudogene|AFG3 ATPase family gene 3-like 2 (yeast) pseudogene 1|AFG3 ATPase family gene 3-like 2 (S. cerevisiae) pseudogene 1|AFG3 ATPase family member 3-like 2 (S. cerevisiae) pseudogene 1|AFG3-like AAA ATPase 2 pseudogene 1" 2005-10-05 2010-01-12 2016-02-23 2016-02-23 347028 ENSG00000253606 OTTHUMG00000164107 NG_016585 PGOHUM00000249313 +HGNC:316 AFM afamin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "ALB2|ALBA" 1994-12-09 2015-08-26 173 ENSG00000079557 OTTHUMG00000130004 uc003hhb.4 L32140 XM_017007842 CCDS3557 P43652 7517938 MGI:2429409 RGD:628614 AFM 104145 +HGNC:20910 AFMID arylformamidase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "DKFZp686F03259|KF" 2004-01-30 2015-08-24 125061 ENSG00000183077 OTTHUMG00000153957 uc002jva.3 BX648442 XM_058889 "CCDS32750|CCDS45801" Q63HM1 MGI:2448704 RGD:1591143 AFMID S09.977 3.5.1.9 +HGNC:317 AFP alpha fetoprotein protein-coding gene gene with protein product Approved 4q13.3 04q13.3 FETA HPAFP 1996-04-01 2016-01-13 2016-01-13 174 ENSG00000081051 OTTHUMG00000130011 uc003hgz.3 V01514 NM_001134 CCDS3556 P02771 MGI:87951 RGD:2065 AFP 104150 173230 +HGNC:25951 AFTPH aftiphilin protein-coding gene gene with protein product Approved 2p14 02p14 "MGC33965|FLJ20080|FLJ23793|Nbla10388" 2006-06-19 2014-11-19 54812 ENSG00000119844 OTTHUMG00000129539 uc002sdb.5 AB073356 NM_017657 "CCDS1878|CCDS46303" Q6ULP2 "14665628|15758025|15811338" MGI:1923012 RGD:1311920 AFTPH +HGNC:318 AGA aspartylglucosaminidase protein-coding gene gene with protein product Approved 4q34.3 04q34.3 ASRG "glycosylasparaginase|N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase" 1991-05-09 2015-08-24 175 ENSG00000038002 OTTHUMG00000160723 uc003iuu.3 X55330 NM_000027 CCDS3829 P20933 MGI:104873 RGD:1309646 AGA 613228 119513 T02.001 3.5.1.26 +HGNC:16922 AGAP1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding gene gene with protein product Approved 2q37.2 02q37.2 "KIAA1099|GGAP1" CENTG2 centaurin, gamma 2 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2001-10-29 2008-09-22 2008-09-22 2016-10-05 116987 ENSG00000157985 OTTHUMG00000133293 uc002vvt.4 AF413078 NM_014914 "CCDS2514|CCDS33408|CCDS58756" Q9UPQ3 MGI:2653690 RGD:1309244 AGAP1 608651 +HGNC:41427 AGAP1-IT1 AGAP1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q37.2 02q37.2 AGAP1 intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100506749 ENSG00000235529 OTTHUMG00000153124 uc061txt.1 NR_131900 +HGNC:16921 AGAP2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 protein-coding gene gene with protein product Approved 12q14.1 12q14.1 CENTG1 centaurin, gamma 1 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2001-10-29 2008-09-22 2008-09-22 2016-10-05 116986 ENSG00000135439 OTTHUMG00000170285 uc001spr.4 AF413077 NM_014770 "CCDS8951|CCDS44932" Q99490 MGI:3580016 RGD:628844 AGAP2 605476 +HGNC:48633 AGAP2-AS1 AGAP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q14.1 12q14.1 "LOC100130776|PUNISHER" 2013-05-30 2016-10-03 100130776 ENSG00000255737 OTTHUMG00000170286 "BC039697|BC069024" NR_027032 "25392693|27195672" +HGNC:16923 AGAP3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 CENTG3 centaurin, gamma 3 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2001-10-29 2008-09-22 2008-09-22 2015-09-11 116988 ENSG00000133612 OTTHUMG00000158724 uc003wjg.3 AF413079 NM_031946 "CCDS43681|CCDS55185|CCDS64802|CCDS78287|CCDS83243" Q96P47 MGI:2183446 RGD:1310751 AGAP3 616813 +HGNC:23459 AGAP4 ArfGAP with GTPase domain, ankyrin repeat and PH domain 4 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "Em:AC012044.1|MRIP2" "CTGLF1|AGAP8|CTGLF5" "centaurin, gamma-like family, member 1|ArfGAP with GTPase domain, ankyrin repeat and PH domain 8|centaurin, gamma-like family, member 5" "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2004-05-27 2008-09-22 2008-09-22 2016-10-05 119016 ENSG00000188234 OTTHUMG00000018088 uc057szm.1 AF411132 NM_133446 CCDS7215 Q96P64 12477932 AGAP4 +HGNC:23467 AGAP5 ArfGAP with GTPase domain, ankyrin repeat and PH domain 5 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 Em:AC073389.1 CTGLF2 centaurin, gamma-like family, member 2 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2004-05-27 2008-09-22 2008-09-22 2015-08-27 729092 ENSG00000172650 OTTHUMG00000018473 uc009xri.4 XM_001132585 CCDS44439 A6NIR3 AGAP5 +HGNC:23466 AGAP6 ArfGAP with GTPase domain, ankyrin repeat and PH domain 6 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 bA324H6.1 CTGLF3 centaurin, gamma-like family, member 3 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2004-05-27 2008-09-22 2008-09-22 2015-08-27 414189 ENSG00000204149 OTTHUMG00000018220 uc001jix.5 NM_001077665 CCDS44397 Q5VW22 AGAP6 +HGNC:23465 AGAP7P ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 bA109G10.1 "CTGLF4|AGAP7" "centaurin, gamma-like family, member 4|ArfGAP with GTPase domain, ankyrin repeat and PH domain 7" "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing" "395|403|682" 2004-05-27 2014-06-12 2014-06-12 2014-11-18 653268 ENSG00000264204 OTTHUMG00000188316 NM_001077685 Q5VUJ5 +HGNC:23463 AGAP9 ArfGAP with GTPase domain, ankyrin repeat and PH domain 9 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "bA301J7.2|FLJ00312" CTGLF6 centaurin, gamma-like family, member 6 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2004-05-27 2008-09-22 2008-09-22 2015-08-27 642517 ENSG00000204172 OTTHUMG00000018115 uc031wfn.1 XM_001716810.2 CCDS73125 Q5VTM2 AGAP9 +HGNC:23659 AGAP10P ArfGAP with GTPase domain, ankyrin repeat and PH domain 10 pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 "bA358L16.1|bA144G6.2" "AGAP10|CTGLF7|CTGLF10P" "ArfGAP with GTPase domain, ankyrin repeat and PH domain 10|centaurin, gamma-like family, member 7|centaurin, gamma-like family, member 10 pseudogene" ArfGAPs 395 2004-05-27 2015-02-05 2015-02-05 2015-02-05 653234 ENSG00000230869 OTTHUMG00000018083 NG_005805 +HGNC:29421 AGAP11 ArfGAP with GTPase domain, ankyrin repeat and PH domain 11 other unknown Approved 10q23.2 10q23.2 KIAA1975 ankyrin repeat and GTPase domain Arf GTPase activating protein 11 "ArfGAPs|Ankyrin repeat domain containing|BAR-PH domain containing" "395|403|1291" 2008-09-22 2015-11-17 2015-11-17 119385 ENSG00000271880 OTTHUMG00000185463 uc057urd.1 NM_133447 Q8TF27 11853319 +HGNC:23661 AGAP12P ArfGAP with GTPase domain, ankyrin repeat and PH domain 12, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 bA164N7.2 CTGLF12P centaurin, gamma-like family, member 12 pseudogene ArfGAPs 395 2004-05-27 2015-11-17 2015-11-17 2015-11-17 414224 ENSG00000265018 OTTHUMG00000018164 BC127745 NR_029396 PGOHUM00000289853 +HGNC:23499 AGAP13P ArfGAP with GTPase domain, ankyrin repeat and PH domain 13, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 bA548K23.1 CTGLF9P centaurin, gamma-like family, member 9 pseudogene ArfGAPs 395 2004-05-27 2015-11-17 2015-11-17 2015-11-17 728005 ENSG00000243289 OTTHUMG00000018095 AF411132 NG_005807 PGOHUM00000290147 +HGNC:23660 AGAP14 ArfGAP with GTPase domain, ankyrin repeat and PH domain 14 other unknown Approved 10q11.22 10q11.22 bA145E20.1 "CTGLF11P|AGAP14P" "centaurin, gamma-like family, member 11 pseudogene|ArfGAP with GTPase domain, ankyrin repeat and PH domain 14, pseudogene" ArfGAPs 395 2004-05-27 2016-07-19 2016-07-19 2016-07-19 653259 ENSG00000279058 uc057szz.1 NG_005806 A8MT82 +HGNC:26504 AGBL1 ATP/GTP binding protein like 1 protein-coding gene gene with protein product Approved 15q25.3 15q25.3 "FLJ32310|CCP4" cytosolic carboxypeptidase 4 2004-11-19 2016-06-21 2016-06-21 123624 ENSG00000166748 OTTHUMG00000149978 uc002blz.2 AK056872 NM_152336 CCDS58398 Q96MI9 "21074048|24094747" MGI:3646469 RGD:1560280 AGBL1 615496 368101 +HGNC:48617 AGBL1-AS1 AGBL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q25.3 15q25.3 2013-05-24 2013-05-24 727915 ENSG00000260125 OTTHUMG00000172872 NR_046012 +HGNC:26296 AGBL2 ATP/GTP binding protein like 2 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "FLJ23598|CCP2" cytoplasmic carboxypeptidase 2 2005-05-26 2016-06-21 2016-06-21 79841 ENSG00000165923 OTTHUMG00000165368 uc001ngg.4 NM_024783 CCDS7944 Q5U5Z8 "12738998|21303978" MGI:2443254 RGD:1306827 AGBL2 M14.029 +HGNC:27981 AGBL3 ATP/GTP binding protein like 3 protein-coding gene gene with protein product Approved 7q33 07q33 "MGC32955|CCP3" 2005-05-26 2016-06-21 2016-06-21 340351 ENSG00000146856 OTTHUMG00000155406 uc011kpw.2 BC030651 NM_178563 CCDS47718 Q8NEM8 MGI:1923473 RGD:1561995 AGBL3 M14.026 +HGNC:25892 AGBL4 ATP/GTP binding protein like 4 protein-coding gene gene with protein product Approved 1p33 01p33 "FLJ14442|CCP6" cytosolic carboxypeptidase 6 2005-05-26 2016-06-21 2016-06-21 84871 ENSG00000186094 OTTHUMG00000007793 uc001cru.3 AK027348 NM_032785 CCDS44137 Q5VU57 21074048 MGI:1918244 RGD:6493177 AGBL4 616476 M14.027 +HGNC:41482 AGBL4-IT1 AGBL4 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p33 01p33 AGBL4 intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 100874313 ENSG00000225623 OTTHUMG00000008155 uc031tzy.1 NR_046839 +HGNC:26147 AGBL5 ATP/GTP binding protein like 5 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "FLJ21839|CCP5" cytosolic carboxypeptidase 5 2007-03-27 2016-06-21 2016-06-21 60509 ENSG00000084693 OTTHUMG00000128406 uc002rie.4 BC007415 NM_021831 "CCDS1732|CCDS42665" Q8NDL9 24022482 MGI:2441745 RGD:1598311 AGBL5 615900 461232 +HGNC:41133 AGBL5-AS1 AGBL5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p23.3 02p23.3 AGBL5 antisense RNA 1 (non-protein coding) 2011-06-08 2012-08-15 2014-11-19 100874031 ENSG00000231636 OTTHUMG00000151996 uc061hjm.1 NR_046730 +HGNC:41484 AGBL5-IT1 AGBL5 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2p23.3 02p23.3 AGBL5 intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 106481744 ENSG00000229122 OTTHUMG00000151991 uc061hjv.1 +HGNC:320 AGER advanced glycosylation end-product specific receptor protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "RAGE|SCARJ1" receptor for advanced glycation end-products "C2-set domain containing|Immunoglobulin like domain containing|Scavenger receptors" "592|594|1253" 1994-10-17 2016-07-18 2016-10-05 177 ENSG00000204305 OTTHUMG00000031120 uc003oal.3 M91211 NM_001136 "CCDS4746|CCDS4747|CCDS56417|CCDS56418|CCDS75429" Q15109 7713518 MGI:893592 RGD:69258 AGER 600214 objectId:2843 +HGNC:5175 AGFG1 ArfGAP with FG repeats 1 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 "RIP|RAB" HRB HIV-1 Rev binding protein ArfGAPs 395 1996-11-15 2008-09-22 2008-09-22 2016-10-05 3267 ENSG00000173744 OTTHUMG00000133186 uc002vpc.3 NM_004504 "CCDS2467|CCDS46533|CCDS46534|CCDS46535" P52594 7637788 MGI:1333754 RGD:1560041 AGFG1 600862 +HGNC:5177 AGFG2 ArfGAP with FG repeats 2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 RABR HRBL HIV-1 Rev binding protein-like ArfGAPs 395 1998-06-03 2008-09-22 2008-09-22 2014-11-18 3268 ENSG00000106351 OTTHUMG00000156029 uc003uvf.4 AF015042 NM_006076 CCDS5697 O95081 9799793 MGI:2443267 RGD:1306590 AGFG2 604019 +HGNC:24684 AGGF1 angiogenic factor with G-patch and FHA domains 1 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "VG5Q|HSU84971|FLJ10283|GPATC7|GPATCH7" G-patch domain containing 579 2004-12-14 2015-11-13 2015-11-13 55109 ENSG00000164252 OTTHUMG00000102132 uc003ket.4 AK001145 NM_018046 CCDS4035 Q8N302 "18564129|17103452" MGI:1913799 RGD:1310888 AGGF1 608464 119516 +HGNC:38051 AGGF1P1 angiogenic factor with G-patch and FHA domains 1 pseudogene 1 pseudogene pseudogene Approved 4q35.2 04q35.2 2010-03-31 2015-11-13 2015-11-13 100132380 ENSG00000214273 OTTHUMG00000160174 NG_022094 PGOHUM00000300469 +HGNC:38052 AGGF1P2 angiogenic factor with G-patch and FHA domains 1 pseudogene 2 pseudogene pseudogene Approved 10q26.3 10q26.3 2010-04-01 2015-11-13 2015-11-13 644435 ENSG00000233435 OTTHUMG00000019330 NG_005569 PGOHUM00000290323 +HGNC:38053 AGGF1P3 angiogenic factor with G-patch and FHA domains 1 pseudogene 3 pseudogene pseudogene Approved 3p12.3 03p12.3 2010-04-01 2015-11-13 2015-11-13 391552 ENSG00000241532 OTTHUMG00000158959 NG_022208 PGOHUM00000299074 +HGNC:38054 AGGF1P4 angiogenic factor with G-patch and FHA domains 1 pseudogene 4 pseudogene pseudogene Approved 16p11.1 16p11.1 2010-04-01 2015-11-13 2015-11-13 100129351 ENSG00000261689 OTTHUMG00000176252 NG_022503 PGOHUM00000293577 +HGNC:51741 AGGF1P5 angiogenic factor with G-patch and FHA domains 1 pseudogene 5 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-05-18 2015-11-13 2015-11-13 100128103 ENSG00000260680 OTTHUMG00000176001 NG_022516 PGOHUM00000293837 +HGNC:51744 AGGF1P6 angiogenic factor with G-patch and FHA domains 1 pseudogene 6 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-05-18 2015-11-13 2015-11-13 106481737 ENSG00000259836 OTTHUMG00000176006 NG_043510 PGOHUM00000293839 +HGNC:51740 AGGF1P7 angiogenic factor with G-patch and FHA domains 1 pseudogene 7 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-05-18 2015-11-13 2015-11-13 100132606 ENSG00000260994 OTTHUMG00000176014 NG_022517 PGOHUM00000293841 +HGNC:51745 AGGF1P8 angiogenic factor with G-patch and FHA domains 1 pseudogene 8 pseudogene pseudogene Approved 16p11.2 16p11.2 2015-05-18 2015-11-13 2015-11-13 100128804 ENSG00000261752 OTTHUMG00000176245 NG_022514 PGOHUM00000293833 +HGNC:51746 AGGF1P9 angiogenic factor with G-patch and FHA domains 1 pseudogene 9 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-05-18 2015-11-13 2015-11-13 100127958 ENSG00000260427 OTTHUMG00000176248 NG_022515 PGOHUM00000293835 +HGNC:51747 AGGF1P10 angiogenic factor with G-patch and FHA domains 1 pseudogene 10 pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-18 2015-11-13 2015-11-13 100288774 ENSG00000282968 OTTHUMG00000191526 NG_046386 PGOHUM00000297086 +HGNC:21869 AGK acylglycerol kinase protein-coding gene gene with protein product Approved 7q34 07q34 FLJ10842 MULK multiple substrate lipid kinase 2005-02-01 2007-01-11 2007-01-11 2014-11-18 55750 ENSG00000006530 OTTHUMG00000157499 uc003vwi.3 BC022777 NM_018238 CCDS5865 Q53H12 "15252046|15939762|17135245" MGI:1917173 RGD:1562046 AGK 610345 286552 2.7.1.94 +HGNC:37661 AGKP1 acylglycerol kinase pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 AGKY1 acylglycerol kinase Y-linked pseudogene 1 2009-12-16 2009-12-16 2016-10-05 359793 ENSG00000226555 OTTHUMG00000036620 NG_002810 PGOHUM00000233964 +HGNC:321 AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "glycogen debranching enzyme|glycogen storage disease type III" amylo-1, 6-glucosidase, 4-alpha-glucanotransferase 1992-07-29 2010-04-27 2016-10-05 178 ENSG00000162688 OTTHUMG00000010803 uc001dsi.2 BC078663 NM_000028 "CCDS759|CCDS760" P35573 1505983 MGI:1924809 RGD:1306376 AGL 610860 119523 "2.4.1.25|3.2.1.33" +HGNC:18407 AGMAT agmatinase protein-coding gene gene with protein product Approved 1p36.21 01p36.21 FLJ23384 agmatine ureohydrolase (agmatinase) 2002-03-22 2015-11-03 2016-10-05 79814 ENSG00000116771 OTTHUMG00000002357 uc001awv.3 AY057097 NM_024758 CCDS160 Q9BSE5 "11804860|14648699|11914032" MGI:1923236 RGD:1308424 AGMAT 3.5.3.11 +HGNC:33784 AGMO alkylglycerol monooxygenase protein-coding gene gene with protein product Approved 7p21.2 07p21.2 FLJ16237 TMEM195 transmembrane protein 195 Fatty acid hydroxylase domain containing 552 2007-11-20 2011-01-31 2011-01-31 2016-10-05 392636 ENSG00000187546 OTTHUMG00000152387 uc003stb.1 NM_001004320 CCDS34604 Q6ZNB7 20643956 MGI:2442495 RGD:1312038 AGMO 613738 1.14.16.5 +HGNC:323 AGMX2 agammaglobulinemia, X-linked 2 (with growth hormone deficiency) phenotype phenotype only Approved Xp22 Xp22 1989-11-23 2014-02-12 179 3502688 300310 +HGNC:3262 AGO1 argonaute 1, RISC catalytic component protein-coding gene gene with protein product Approved 1p34.3 01p34.3 hAGO1 argonaute 1 EIF2C1 "eukaryotic translation initiation factor 2C, 1|argonaute RISC catalytic component 1" Argonaute/PIWI family 408 1999-12-07 2013-02-15 2015-11-27 2015-11-27 26523 ENSG00000092847 OTTHUMG00000007381 uc001bzl.5 AF093097 XM_017001016 "CCDS398|CCDS81300" Q9UL18 "10534406|12906857" MGI:2446630 RGD:1304619 606228 +HGNC:3263 AGO2 argonaute 2, RISC catalytic component protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "hAGO2|Q10" argonaute 2 EIF2C2 "eukaryotic translation initiation factor 2C, 2|argonaute RISC catalytic component 2" Argonaute/PIWI family 408 2000-01-14 2013-02-15 2015-11-27 2015-11-27 27161 ENSG00000123908 OTTHUMG00000164232 uc003yvm.5 AF121255 XM_011516968 "CCDS6380|CCDS55279" Q9UKV8 "10534406|12906857" MGI:2446632 RGD:621255 606229 +HGNC:18421 AGO3 argonaute 3, RISC catalytic component protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "hAGO3|FLJ12765" argonaute 3 EIF2C3 "eukaryotic translation initiation factor 2C, 3|argonaute RISC catalytic component 3" Argonaute/PIWI family 408 2002-04-26 2013-02-15 2015-11-27 2016-10-05 192669 ENSG00000126070 OTTHUMG00000184172 uc001bzp.4 AB046787 NM_024852 "CCDS399|CCDS400" Q9H9G7 12906857 MGI:2446634 RGD:1309163 607355 +HGNC:18424 AGO4 argonaute 4, RISC catalytic component protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "hAGO4|KIAA1567|FLJ20033" argonaute 4 EIF2C4 "eukaryotic translation initiation factor 2C, 4|argonaute RISC catalytic component 4" Argonaute/PIWI family 408 2002-04-26 2013-02-15 2015-11-27 2016-10-05 192670 ENSG00000134698 OTTHUMG00000004243 uc001bzj.3 AB046787 NM_017629 CCDS397 Q9HCK5 12906857 MGI:1924100 RGD:1304583 607356 +HGNC:324 AGPAT1 1-acylglycerol-3-phosphate O-acyltransferase 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 LPAAT-alpha lysophosphatidic acid acyltransferase, alpha 1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha) 1-acylglycerol-3-phosphate O-acyltransferases 46 1999-12-07 2013-02-05 2016-10-05 10554 ENSG00000204310 OTTHUMG00000031210 uc003oah.4 U56417 NM_006411 CCDS4744 Q99943 "9461603|9291118" MGI:1932075 RGD:1303287 AGPAT1 603099 2.3.1.51 +HGNC:325 AGPAT2 1-acylglycerol-3-phosphate O-acyltransferase 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 LPAAT-beta lysophosphatidic acid acyltransferase, beta BSCL "Berardinelli-Seip congenital lipodystrophy|1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)" 1-acylglycerol-3-phosphate O-acyltransferases 46 1999-12-07 2013-02-05 2015-08-24 10555 ENSG00000169692 OTTHUMG00000020936 uc004cii.2 AF000237 NM_006412 "CCDS7003|CCDS35181" O15120 "9242711|9212163" MGI:1914762 RGD:1309229 AGPAT2 603100 119525 2.3.1.51 +HGNC:326 AGPAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 LPAAT-gamma 1-acylglycerol-3-phosphate O-acyltransferases 46 2000-05-16 2015-08-26 56894 ENSG00000160216 OTTHUMG00000086892 uc002zdv.4 AF156774 NM_020132 CCDS13703 Q9NRZ7 MGI:1336186 RGD:1305787 AGPAT3 614794 2.3.1.51 +HGNC:20885 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding gene gene with protein product Approved 6q26 06q26 "LPAAT-delta|dJ473J16.2" lysophosphatidic acid acyltransferase, delta 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) 1-acylglycerol-3-phosphate O-acyltransferases 46 2003-11-25 2013-02-05 2016-10-05 56895 ENSG00000026652 OTTHUMG00000015966 uc003qtr.2 AF156776 NM_020133 CCDS5280 Q9NRZ5 MGI:1915512 RGD:619916 AGPAT4 614795 2.3.1.51 +HGNC:20988 AGPAT4-IT1 AGPAT4 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6q26 06q26 FLJ23112 "C6orf59|NCRNA00241" "chromosome 6 open reading frame 59|non-protein coding RNA 241|AGPAT4 intronic transcript 1 (non-protein coding)" 2003-04-29 2011-08-11 2015-02-25 2016-10-04 79992 ENSG00000279355 OTTHUMG00000152859 uc003qtu.5 AK026765 NR_024277 Q9H0P7 +HGNC:20886 AGPAT5 1-acylglycerol-3-phosphate O-acyltransferase 5 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "FLJ11210|LPAAT-e|LPAAT-epsilon" lysophosphatidic acid acyltransferase, epsilon 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) 1-acylglycerol-3-phosphate O-acyltransferases 46 2004-12-03 2013-02-05 2013-02-05 55326 ENSG00000155189 OTTHUMG00000163656 uc003wqo.4 AF375789 NM_018361 CCDS34796 Q9NUQ2 MGI:1196345 RGD:1306405 AGPAT5 614796 2.3.1.51 +HGNC:37709 AGPAT5P1 1-acylglycerol-3-phosphate O-acyltransferase 5 pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-02-03 2014-11-19 646231 ENSG00000234652 OTTHUMG00000036179 NG_028688 PGOHUM00000233891 +HGNC:327 AGPS alkylglycerone phosphate synthase protein-coding gene gene with protein product Approved 2q31.2 02q31.2 "ADHAPS|ADAS|ALDHPSY|ADPS|ADAP-S" 1998-10-14 2016-10-05 8540 ENSG00000018510 OTTHUMG00000132530 uc002ull.3 Y09443 XM_011512041 CCDS2275 O00116 "9187299|9553082" MGI:2443065 RGD:620364 AGPS 603051 119528 2.5.1.26 +HGNC:328 AGR2 anterior gradient 2, protein disulphide isomerase family member protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "XAG-2|HAG-2|AG2|PDIA17" protein disulfide isomerase family A, member 17 anterior gradient 2 homolog (Xenopus laevis) Protein disulfide isomerases 692 2000-03-06 2015-07-02 2016-10-05 10551 ENSG00000106541 OTTHUMG00000023446 uc003str.4 AF038451 NM_006408 CCDS5364 O95994 9790916 MGI:1344405 RGD:1304606 AGR2 606358 +HGNC:24167 AGR3 anterior gradient 3, protein disulphide isomerase family member protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "HAG3|hAG-3|BCMP11|PDIA18" "breast cancer membrane protein 11|protein disulfide isomerase family A, member 18" anterior gradient 3 homolog (Xenopus laevis) Protein disulfide isomerases 692 2007-02-05 2015-07-02 2015-08-26 155465 ENSG00000173467 OTTHUMG00000128411 uc003sts.4 AY069977 NM_176813 CCDS5365 Q8TD06 "12592373|12477722" MGI:2685734 RGD:1565406 AGR3 609482 +HGNC:329 AGRN agrin protein-coding gene gene with protein product Approved 1p36.33 01p36.33 AGRIN agrin proteoglycan Proteoglycans 570 1992-02-14 2007-02-16 2016-10-12 375790 ENSG00000188157 OTTHUMG00000040778 uc001ack.3 XM_372195 NM_198576 CCDS30551 O00468 "1851019|12270958" MGI:87961 RGD:2067 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=AGRN|LRG_198|http://www.lrg-sequence.org/LRG/LRG_198" AGRN 103320 233062 +HGNC:330 AGRP agouti related neuropeptide protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "Agrt|ART|ASIP2" "agouti (mouse) related protein|agouti related protein homolog (mouse)" Endogenous ligands 542 1998-06-22 2014-07-15 2016-10-05 181 ENSG00000159723 OTTHUMG00000137509 uc002etg.1 U88063 NM_001138 CCDS10839 O00253 "9119224|9311920" MGI:892013 RGD:2068 AGRP 602311 +HGNC:333 AGT angiotensinogen protein-coding gene gene with protein product Approved 1q42.2 01q42.2 alpha-1 antiproteinase, antitrypsin SERPINA8 serpin peptidase inhibitor, clade A, member 8 "Endogenous ligands|Serpin peptidase inhibitors" "542|739" 1989-06-30 2001-06-29 2016-01-12 2016-01-12 183 ENSG00000135744 OTTHUMG00000037757 uc001hty.6 K02215 NM_000029 CCDS1585 P01019 "6089875|24172014" MGI:87963 RGD:2069 AGT 106150 119535 I04.953 +HGNC:17258 AGTPBP1 ATP/GTP binding protein 1 protein-coding gene gene with protein product Approved 9q21.33 09q21.33 "KIAA1035|Nna1|CCP1" "cytosolic carboxypeptidase 1|tubulinyl-Tyr carboxypeptidase|carboxypeptidase-tubulin|tyrosine carboxypeptidase|soluble carboxypeptidase" 2002-03-27 2014-11-19 23287 ENSG00000135049 OTTHUMG00000020124 uc010mqc.4 AB028958 NM_015239 "CCDS6672|CCDS75854|CCDS69615|CCDS83382" Q9UPW5 11083920 MGI:2159437 RGD:1306307 AGTPBP1 606830 M14.028 +HGNC:336 AGTR1 angiotensin II receptor type 1 protein-coding gene gene with protein product Approved 3q24 03q24 "AT1|AT2R1|AGTR1A|AT2R1A|HAT1R|AG2S|AT2R1B|AT1B" AGTR1B angiotensin receptor 1B Angiotensin receptors 221 1992-08-25 2016-01-12 2016-03-15 185 ENSG00000144891 OTTHUMG00000159503 uc003ewj.4 M87290 NM_009585 "CCDS3137|CCDS82854|CCDS82855" P30556 1550596 MGI:87965 RGD:2070 AGTR1 106165 138533 objectId:34 +HGNC:338 AGTR2 angiotensin II receptor type 2 protein-coding gene gene with protein product Approved Xq23 Xq23 "AT2|MRX88" angiotensin receptor 2 "X-linked mental retardation|Angiotensin receptors" "103|221" 1992-08-25 2016-01-12 2016-10-05 186 ENSG00000180772 OTTHUMG00000022243 uc004eqh.5 AY324607 NM_000686 CCDS14569 P50052 1550596 MGI:87966 RGD:2072 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AGTR2 AGTR2 300034 159921 objectId:35 +HGNC:13539 AGTRAP angiotensin II receptor associated protein protein-coding gene gene with protein product Approved 1p36.22 01p36.22 ATRAP 2002-09-12 2016-01-12 2016-01-12 57085 ENSG00000177674 OTTHUMG00000002230 uc001asv.4 AF165187 NM_020350 "CCDS136|CCDS30585|CCDS30586|CCDS41248|CCDS44056" Q6RW13 11733189 MGI:1339977 RGD:1359346 AGTRAP 608729 +HGNC:340 AGTRL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:341 AGXT alanine-glyoxylate aminotransferase protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "AGXT1|PH1|AGT|SPT|AGT1" "oxalosis I|primary hyperoxaluria type 1|L-alanine: glyoxylate aminotransferase 1|serine:pyruvate aminotransferase|glycolicaciduria" SPAT 1990-11-20 2007-04-13 2015-09-11 189 ENSG00000172482 OTTHUMG00000133354 uc002waa.5 D13368 NM_000030 CCDS2543 P21549 "2039493|2045108" MGI:1329033 RGD:2073 AGXT 604285 119538 "2.6.1.44|2.6.1.51" +HGNC:14412 AGXT2 alanine--glyoxylate aminotransferase 2 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 AGT2 "beta-alanine-pyruvate aminotransferase|beta-ALAAT II" alanine-glyoxylate aminotransferase 2 2001-01-22 2010-05-07 2016-10-05 64902 ENSG00000113492 OTTHUMG00000090788 uc003jjf.4 AJ292204 NM_031900 "CCDS3908|CCDS78000" Q9BYV1 15240345 MGI:2146052 RGD:621767 AGXT2 612471 2.6.1.44 +HGNC:24618 AHCTF1 AT-hook containing transcription factor 1 protein-coding gene gene with protein product Approved 1q44 01q44 ELYS ELYS transcription factor like protein TMBS62 AT hook containing transcription factor 1 Nucleoporins 1051 2005-06-20 2015-11-23 2016-04-25 25909 ENSG00000153207 OTTHUMG00000040706 uc001ibv.3 NM_015446 CCDS1629 Q8WYP5 11952839 MGI:1915033 RGD:1561291 AHCTF1 610853 +HGNC:24620 AHCTF1P1 AT-hook containing transcription factor 1 pseudogene 1 pseudogene pseudogene Approved 2q24.2 02q24.2 ELYS-like AHCTF1P "AT hook containing transcription factor 1 pseudogene|AT hook containing transcription factor 1 pseudogene 1" 2005-06-20 2010-01-12 2015-11-23 2015-11-23 285116 NG_002622 +HGNC:343 AHCY adenosylhomocysteinase protein-coding gene gene with protein product Approved 20q11.22 20q11.22 SAHH S-adenosylhomocysteine hydrolase 1986-01-01 2009-06-12 2015-09-11 191 ENSG00000101444 OTTHUMG00000140098 uc002xai.4 M61832 NM_000687 "CCDS13233|CCDS54457" P23526 "7079734|6580258" MGI:87968 RGD:69260 AHCY 180960 119546 objectId:1233 3.3.1.1 +HGNC:344 AHCYL1 adenosylhomocysteinase like 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "XPVKONA|IRBIT|PPP1R78" "inositol 1,4,5-trisphosphate receptor-binding protein|protein phosphatase 1, regulatory subunit 78" "S-adenosylhomocysteine hydrolase-like 1|adenosylhomocysteinase-like 1" Protein phosphatase 1 regulatory subunits 694 1999-07-23 2015-11-11 2016-10-05 10768 ENSG00000168710 OTTHUMG00000011652 uc001dyx.4 U82761 XR_001736934 "CCDS818|CCDS55620" O43865 "11904675|16754674|12525476" MGI:2385184 RGD:1309768 AHCYL1 607826 +HGNC:22204 AHCYL2 adenosylhomocysteinase like 2 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 KIAA0828 S-adenosylhomocysteine hydrolase-like 2 2008-01-17 2016-01-14 2016-04-25 23382 ENSG00000158467 OTTHUMG00000157677 uc011kov.3 AB020635 XM_011515987 "CCDS47706|CCDS47707|CCDS47708|CCDS5812" Q96HN2 MGI:1921590 RGD:1564895 AHCYL2 616520 +HGNC:44993 AHCYP1 adenosylhomocysteinase pseudogene 1 pseudogene pseudogene Approved 10q11.22 10q11.22 2013-01-04 2015-08-24 340844 NG_022175 PGOHUM00000290141 +HGNC:44994 AHCYP2 adenosylhomocysteinase pseudogene 2 pseudogene pseudogene Approved 9q33.2 09q33.2 2013-01-04 2013-01-04 392387 ENSG00000238181 OTTHUMG00000020571 NG_021677 PGOHUM00000236763 +HGNC:44995 AHCYP3 adenosylhomocysteinase pseudogene 3 pseudogene pseudogene Approved 2q12.1 02q12.1 2013-01-04 2013-01-04 402093 ENSG00000233955 OTTHUMG00000153048 NG_021515 PGOHUM00000240232 +HGNC:44996 AHCYP4 adenosylhomocysteinase pseudogene 4 pseudogene pseudogene Approved 2q22.1 02q22.1 2013-01-04 2013-01-04 129560 ENSG00000232992 OTTHUMG00000153632 NG_021526 PGOHUM00000240360 +HGNC:44997 AHCYP5 adenosylhomocysteinase pseudogene 5 pseudogene pseudogene Approved 2q32.3 02q32.3 2013-01-04 2013-01-04 391470 ENSG00000213107 OTTHUMG00000154377 NG_021544 PGOHUM00000240468 +HGNC:44998 AHCYP6 adenosylhomocysteinase pseudogene 6 pseudogene pseudogene Approved 11q14.1 11q14.1 2013-01-04 2013-01-04 100419714 NG_024541 PGOHUM00000242830 +HGNC:44999 AHCYP7 adenosylhomocysteinase pseudogene 7 pseudogene pseudogene Approved 15q21.2 15q21.2 2013-01-04 2014-07-15 645486 ENSG00000259465 OTTHUMG00000172446 NG_022129 PGOHUM00000293238 +HGNC:45000 AHCYP8 adenosylhomocysteinase pseudogene 8 pseudogene pseudogene Approved 1q44 01q44 2013-01-04 2013-01-04 107063538 ENSG00000242529 OTTHUMG00000040381 NG_046356 PGOHUM00000244547 +HGNC:25230 AHDC1 AT-hook DNA binding motif containing 1 protein-coding gene gene with protein product Approved 1p36.11-p35.3 01p36.11-p35.3 "DJ159A19.3|RP1-159A19.1" AT hook, DNA binding motif, containing 1 2005-07-21 2015-11-23 2016-10-11 27245 ENSG00000126705 OTTHUMG00000003398 uc057dvu.1 AK125431 XM_005245848 CCDS30652 Q5TGY3 "8619474|9110174" MGI:2444218 RGD:1310031 AHDC1 615790 423013 +HGNC:21575 AHI1 Abelson helper integration site 1 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "FLJ20069|ORF1|JBTS3" Jouberin Abelson helper integration site WD repeat domain containing 362 2003-08-22 2005-11-29 2016-10-05 54806 ENSG00000135541 OTTHUMG00000015631 uc003qgj.4 AJ459824 NM_017651 "CCDS47483|CCDS47484" Q8N157 "15060101|16240161" MGI:87971 RGD:1303040 AHI1 608894 119549 +HGNC:347 AHNAK AHNAK nucleoprotein protein-coding gene gene with protein product Approved 11q12.3 11q12.3 MGC5395 desmoyokin AHNAK nucleoprotein (desmoyokin) PDZ domain containing 1220 1994-12-12 2007-03-30 2016-10-05 79026 ENSG00000124942 OTTHUMG00000167558 uc001ntl.4 M80899 NM_024060 "CCDS31584|CCDS44625" Q09666 "7987395|12153988" MGI:1316648 RGD:619779 AHNAK 103390 +HGNC:20125 AHNAK2 AHNAK nucleoprotein 2 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 C14orf78 chromosome 14 open reading frame 78 PDZ domain containing 1220 2003-01-13 2007-03-26 2007-03-26 2015-08-28 113146 ENSG00000185567 OTTHUMG00000170765 uc010axc.2 AB095939 NM_138420 CCDS45177 Q8IVF2 15007166 MGI:2144831 RGD:1309696 AHNAK2 608570 +HGNC:348 AHR aryl hydrocarbon receptor protein-coding gene gene with protein product Approved 7p21.1 07p21.1 bHLHe76 Basic helix-loop-helix proteins 420 1993-05-18 2016-10-05 196 ENSG00000106546 OTTHUMG00000149967 uc011jxz.2 L19872 NM_001621 CCDS5366 P35869 8125016 MGI:105043 RGD:2074 AHR 600253 +HGNC:346 AHRR aryl-hydrocarbon receptor repressor protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "KIAA1234|bHLHe77" "AHH|AHHR" aryl hydrocarbon receptor regulator Basic helix-loop-helix proteins 420 1986-01-01 2003-09-12 2003-09-11 2014-11-18 57491 ENSG00000063438 OTTHUMG00000162171 uc003jav.4 AB033060 NM_020731 "CCDS43297|CCDS56355" A9YTQ3 "1070014|11423533" MGI:1333776 RGD:1559857 AHRR 606517 +HGNC:1189 AHSA1 activator of Hsp90 ATPase activity 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "p38|Aha1|hAha1" C14orf3 "chromosome 14 open reading frame 3|AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast)" 1999-07-01 2003-04-11 2016-05-03 2016-05-03 10598 ENSG00000100591 OTTHUMG00000171539 uc001xtw.4 AJ243310 NM_012111 CCDS9863 O95433 26796264 MGI:2387603 RGD:1589285 AHSA1 608466 +HGNC:20437 AHSA2 AHA1, activator of heat shock 90kDa protein ATPase homolog 2 (yeast) protein-coding gene gene with protein product Approved 2p15 02p15 "DKFZp564C236|Hch1" 2003-04-04 2016-10-05 130872 ENSG00000173209 OTTHUMG00000129437 uc002sbc.3 AK092817 NM_152392 CCDS1868 Q719I0 12504007 MGI:1916133 RGD:1307171 AHSA2 +HGNC:349 AHSG alpha 2-HS glycoprotein protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "FETUA|A2HS|HSGA" fetuin A Cystatins, type 4 968 1986-01-01 2016-05-23 2016-05-23 197 ENSG00000145192 OTTHUMG00000156605 uc003fqk.5 "D67013|M16961" NM_001622 CCDS3278 P02765 "9322749|7736783" MGI:107189 RGD:2075 AHSG 138680 LI25-004 +HGNC:18075 AHSP alpha hemoglobin stabilizing protein protein-coding gene gene with protein product Approved 16p11.2 16p11.2 EDRF alpha hemoglobin stabilising protein ERAF erythroid associated factor 2002-02-13 2009-10-07 2009-10-07 2016-10-12 51327 ENSG00000169877 OTTHUMG00000132461 uc002ecj.4 AF208865 NM_016633 CCDS10716 Q9NZD4 "11231637|12066189" MGI:2158492 RGD:1306725 LRG_1073|http://www.lrg-sequence.org/LRG/LRG_1073 AHSP 605821 +HGNC:350 AIC Aicardi syndrome phenotype phenotype only Approved Xp22 Xp22 1986-01-01 2006-02-22 192 "6818132|1971852" 304050 +HGNC:13203 AICDA activation induced cytidine deaminase protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "HIGM2|CDA2|ARP2|AID" activation-induced cytidine deaminase Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2000-09-19 2016-07-04 2016-10-12 57379 ENSG00000111732 OTTHUMG00000168676 uc001qur.3 AB040430 NM_020661 "CCDS41747|CCDS81662" Q9GZX7 MGI:1342279 RGD:1303222 "AICDA base: Mutation registry for Aid deficiency|http://structure.bmc.lu.se/idbase/AICDAbase/|LRG_17|http://www.lrg-sequence.org/LRG/LRG_17" AICDA 605257 119554 +HGNC:25761 AIDA axin interactor, dorsalization associated protein-coding gene gene with protein product Approved 1q41 01q41 FLJ12806 axin interaction partner and dorsalization antagonist C1orf80 chromosome 1 open reading frame 80 2005-05-24 2008-05-22 2008-05-22 2014-11-19 64853 ENSG00000186063 OTTHUMG00000037653 uc001hnn.4 BC043142 NM_022831 CCDS1533 Q96BJ3 "8619474|9110174|17681137" MGI:1919737 RGD:1592746 AIDA 612375 +HGNC:352 AIF1 allograft inflammatory factor 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "IRT-1|AIF-1|Em:AF129756.17|IBA1" "interferon gamma responsive transcript|ionized calcium-binding adapter molecule 1" EF-hand domain containing 863 1997-07-01 2016-10-05 199 ENSG00000204472 OTTHUMG00000031246 uc003nuy.4 U19713 XM_005248870 "CCDS4706|CCDS34398" P55008 8912632 MGI:1343098 RGD:61924 AIF1 601833 +HGNC:28904 AIF1L allograft inflammatory factor 1 like protein-coding gene gene with protein product Approved 9q34.12-q34.13 09q34.12-q34.13 "IBA2|FLJ12783" C9orf58 "chromosome 9 open reading frame 58|allograft inflammatory factor 1-like" EF-hand domain containing 863 2004-01-06 2008-10-21 2016-03-15 2016-10-11 83543 ENSG00000126878 OTTHUMG00000020817 uc004cad.2 AL136566 NM_031426 "CCDS6939|CCDS55348|CCDS55349" Q9BQI0 11230166 MGI:1919598 RGD:1305081 AIF1L +HGNC:8768 AIFM1 apoptosis inducing factor, mitochondria associated 1 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "AIF|CMTX4" "PDCD8|NAMSD" "programmed cell death 8 (apoptosis-inducing factor)|neuropathy, axonal, motor-sensory with deafness and mental retardation (Cowchock syndrome)|apoptosis-inducing factor, mitochondrion-associated, 1" 1999-05-28 2006-11-16 2015-11-19 2015-11-19 9131 ENSG00000156709 OTTHUMG00000022392 uc004evg.4 AF100928 NM_004208 "CCDS14618|CCDS14619|CCDS48167|CCDS48166" O95831 "9989411|23217327" MGI:1349419 RGD:620817 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AIFM1 AIFM1 300169 244686 +HGNC:44884 AIFM1P1 apoptosis inducing factor, mitochondria associated 1 pseudogene 1 pseudogene pseudogene Approved 10p12.31 10p12.31 apoptosis-inducing factor, mitochondrion-associated, 1 pseudogene 1 2012-12-11 2015-11-19 2015-11-19 645120 ENSG00000225509 OTTHUMG00000017768 NG_021350 PGOHUM00000238680 +HGNC:21411 AIFM2 apoptosis inducing factor, mitochondria associated 2 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "FLJ14497|PRG3" AMID "apoptosis-inducing factor (AIF)-like mitochondrion-associated inducer of death|apoptosis-inducing factor, mitochondrion-associated, 2" 2004-04-20 2006-11-16 2015-11-19 2016-10-05 84883 ENSG00000042286 OTTHUMG00000018398 uc010qjg.3 AK027403 NM_032797 CCDS7297 Q9BRQ8 "12135761|11980907|15958387" MGI:1918611 RGD:1304964 AIFM2 605159 +HGNC:26398 AIFM3 apoptosis inducing factor, mitochondria associated 3 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "AIFL|FLJ30473" apoptosis-inducing factor, mitochondrion-associated, 3 2006-11-16 2015-11-19 2015-11-19 150209 ENSG00000183773 OTTHUMG00000150804 uc002ztj.3 AK094844 NM_144704 "CCDS13786|CCDS33605|CCDS54503" Q96NN9 15764604 MGI:1919418 RGD:1306028 AIFM3 +HGNC:21607 AIG1 androgen induced 1 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 "dJ95L4.1|AIG-1|FLJ10485" 2003-06-26 2016-07-01 2016-10-05 51390 ENSG00000146416 OTTHUMG00000015721 uc003qjh.5 AF153605 NM_016108 "CCDS5198|CCDS69216|CCDS69215" Q9NVV5 11266118 MGI:1913503 RGD:1562920 AIG1 608514 +HGNC:43926 AIG1P1 androgen induced 1 pseudogene 1 pseudogene pseudogene Approved 5p13.1 05p13.1 2012-05-04 2016-07-01 2016-07-01 106479028 ENSG00000249089 OTTHUMG00000162194 NG_044322 PGOHUM00000235567 +HGNC:355 AIH3 amelogenesis imperfecta 3, hypomaturation or hypoplastic type phenotype phenotype only Approved Xq22-q28 Xq22-q28 1992-02-20 2011-02-24 201 1358807 301201 +HGNC:356 AIM1 absent in melanoma 1 protein-coding gene gene with protein product Approved 6q21 06q21 CRYBG1 "suppression of tumorigenicity 4|beta-gamma crystallin domain containing 1" ST4 suppression of tumorigenicity 4 (malignant melanoma) 1997-06-12 2015-08-24 202 ENSG00000112297 OTTHUMG00000015302 uc284pzd.1 U83115 XM_005266839 CCDS34506 Q9Y4K1 "1680551|12693952" MGI:109544 RGD:1308629 AIM1 601797 +HGNC:17295 AIM1L absent in melanoma 1-like protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "CRYBG2|FLJ38020" beta-gamma crystallin domain containing 2 2001-11-30 2016-10-05 55057 ENSG00000176092 OTTHUMG00000003490 uc001bmd.4 NM_001039775.2 Q8N1P7 MGI:1334463 RGD:1308621 AIM1L +HGNC:357 AIM2 absent in melanoma 2 protein-coding gene gene with protein product Approved 1q23.1-q23.2 01q23.1-q23.2 PYHIN4 Pyrin and HIN domain family 995 1999-04-22 2016-10-11 9447 ENSG00000163568 OTTHUMG00000037183 uc001ftj.2 AF024714 NM_004833 CCDS1181 O14862 9242382 MGI:2686159 RGD:1307283 AIM2 604578 +HGNC:10648 AIMP1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding gene gene with protein product Approved 4q24 04q24 "EMAPII|EMAP-2|p43" "EMAP II|ARS-interacting multifunctional protein 1" SCYE1 small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating) 2000-04-13 2009-05-20 2016-05-10 2016-05-10 9255 ENSG00000164022 OTTHUMG00000131217 uc011cfg.3 U10117 NM_004757 "CCDS3674|CCDS47121" Q12904 "7929199|7545917" MGI:102774 RGD:620466 AIMP1 603605 258625 +HGNC:16543 AIMP1P1 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 pseudogene 1 pseudogene pseudogene Approved 20p12.1 20p12.1 bA400P21.1 SCYE1P small inducible cytokine subfamily E, member 1 (endothelial monocyte-activating) pseudogene 2001-09-17 2012-01-31 2016-05-10 2016-05-10 170547 ENSG00000234187 OTTHUMG00000031913 AL136992 NG_001053 PGOHUM00000247596 +HGNC:43693 AIMP1P2 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 pseudogene 2 pseudogene pseudogene Approved 1q24.3 01q24.3 2012-01-31 2016-05-10 2016-05-10 100873064 ENSG00000227177 OTTHUMG00000034833 NG_032149 PGOHUM00000244338 +HGNC:20609 AIMP2 aminoacyl tRNA synthetase complex interacting multifunctional protein 2 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "p38|PRO0992|JTV-1|JTV1" 2009-05-20 2016-05-10 2016-05-10 7965 ENSG00000106305 OTTHUMG00000122077 uc003spo.4 U24169 NM_006303 CCDS5344 Q13155 "8666379|18695251" MGI:2385237 RGD:1560787 AIMP2 600859 +HGNC:358 AIP aryl hydrocarbon receptor interacting protein protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "XAP2|ARA9|FKBP16" aryl hydrocarbon receptor-interacting protein FKBP prolyl isomerases 910 1999-01-22 2001-11-29 2016-10-12 9049 ENSG00000110711 OTTHUMG00000167674 uc001olv.4 U31913 NM_003977 CCDS8168 O00170 "8972861|9111057" MGI:109622 RGD:628619 LRG_460|http://www.lrg-sequence.org/LRG/LRG_460 AIP 605555 200951 +HGNC:359 AIPL1 aryl hydrocarbon receptor interacting protein like 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 LCA4 "aryl hydrocarbon receptor-interacting protein-like 1|aryl hydrocarbon receptor interacting protein-like 1" FKBP prolyl isomerases 910 1999-03-18 2016-03-22 2016-10-05 23746 ENSG00000129221 OTTHUMG00000102043 uc002gcp.5 AF148864 NM_014336 "CCDS11075|CCDS32539|CCDS32540|CCDS67130|CCDS67131|CCDS67132|CCDS67133" Q9NZN9 "10615133|14555765|15365173" MGI:2148800 RGD:70906 Mutations of the Aryl Hydrocarbon Receptor-interacting Protein-like 1|http://www.retina-international.org/files/sci-news/aipl1mut.htm AIPL1 604392 119559 +HGNC:360 AIRE autoimmune regulator protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "PGA1|APS1" autoimmune polyendocrinopathy candidiasis ectodermal dystrophy APECED autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy) PHD finger proteins 88 1997-09-05 2007-06-20 2016-10-12 326 ENSG00000160224 OTTHUMG00000086921 uc002zei.4 AB006684 NM_000383 CCDS13706 O43918 9398840 MGI:1338803 RGD:1311139 "AIREbase: Mutation registry for APECED|http://structure.bmc.lu.se/idbase/AIREbase/|LRG_18|http://www.lrg-sequence.org/LRG/LRG_18" AIRE 607358 119562 +HGNC:34515 AIRN antisense of IGF2R non-protein coding RNA non-coding RNA RNA, long non-coding Approved 6q25.3 06q25.3 "AIR|NCRNA00088|IGF2RAS|IGF2R-AS1" "non-protein coding RNA 88|IGF2R antisense RNA 1 (non-protein coding)" antisense of IGF2R RNA (non-protein coding) Long non-coding RNAs 788 2008-11-25 2012-08-16 2014-10-22 100271873 ENSG00000268257 OTTHUMG00000183173 uc031sqx.1 NR_047511 "18789384|19008856" MGI:1353471 604893 Air +HGNC:16304 AIS1 autoimmune susceptibility 1 phenotype phenotype only Approved 1p33-p31 01p33-p31 2003-08-26 2014-02-12 373071 "11912181|12707860|16098053" +HGNC:23054 AIS2 autoimmune susceptibility 2 phenotype phenotype only Approved 7q11.22 07q11.22 2003-09-11 2004-05-17 378426 14691733 608391 +HGNC:23083 AIS3 autoimmune susceptibility 3 (vitiligo specific) phenotype phenotype only Approved 8 08 2003-09-11 2004-05-17 378427 14691733 608392 +HGNC:30801 AJAP1 adherens junctions associated protein 1 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "SHREW1|SHREW-1|MOT8" transmembrane protein SHREW1 2005-07-11 2008-01-08 2014-11-19 55966 ENSG00000196581 OTTHUMG00000000645 uc001alo.5 AF175409 NM_018836 CCDS54 Q9UKB5 14595118 MGI:2685419 RGD:1590138 AJAP1 610972 +HGNC:20250 AJUBA ajuba LIM protein protein-coding gene gene with protein product Approved 14q11.2 14q11.2 MGC15563 JUB jub, ajuba homolog (Xenopus laevis) LIM domain containing 1218 2003-01-14 2011-11-10 2011-11-10 2014-11-19 84962 ENSG00000129474 OTTHUMG00000028711 uc001whz.4 AK025567 NM_032876 "CCDS9581|CCDS9582" Q96IF1 10330178 MGI:1341886 RGD:620407 609066 +HGNC:361 AK1 adenylate kinase 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 Adenylate kinases 356 1986-01-01 2016-10-05 203 ENSG00000106992 OTTHUMG00000020722 uc004bsm.4 J04809 XM_017014427 "CCDS6881|CCDS83419" P00568 MGI:87977 RGD:2076 AK1 103000 119567 2.7.4.3 +HGNC:362 AK2 adenylate kinase 2 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 Adenylate kinases 356 1986-01-01 2016-10-12 204 ENSG00000004455 OTTHUMG00000004131 uc001bwp.3 U84371 NM_001625 "CCDS373|CCDS374|CCDS81294|CCDS81295|CCDS81296" P54819 "8843353|6961883" MGI:87978 RGD:2077 LRG_133|http://www.lrg-sequence.org/LRG/LRG_133 AK2 103020 173523 2.7.4.3 +HGNC:24037 AK2P1 adenylate kinase 2 pseudogene 1 pseudogene pseudogene Approved 1p32.1 01p32.1 AK2B 2007-07-25 2007-07-25 266920 AF056332 NG_002393 10092943 +HGNC:33542 AK2P2 adenylate kinase 2 pseudogene 2 pseudogene pseudogene Approved 2p22.3 02p22.3 2007-07-25 2016-10-05 339736 ENSG00000242272 OTTHUMG00000152054 NG_009660 PGOHUM00000240008 +HGNC:17376 AK3 adenylate kinase 3 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 AKL3L1 "AK6|AK3L1" "adenylate kinase 6|adenylate kinase 3 like 1" Adenylate kinases 356 2002-12-17 2005-04-07 2004-06-11 2014-11-19 50808 ENSG00000147853 OTTHUMG00000019472 uc003ziq.4 BC013771 NM_016282 "CCDS6455|CCDS56561|CCDS56562" Q9UIJ7 "8288|182062" MGI:1860835 RGD:619885 AK3 609290 +HGNC:31099 AK3P2 adenylate kinase 3 pseudogene 2 pseudogene pseudogene Approved 8q24.3 08q24.3 HsT26053 2005-10-06 2014-11-19 100419074 ENSG00000250115 OTTHUMG00000160500 NG_026075 PGOHUM00000249519 +HGNC:39062 AK3P3 adenylate kinase 3 pseudogene 3 pseudogene pseudogene Approved 7p15.3 07p15.3 2010-09-29 2014-11-19 100419075 ENSG00000230042 OTTHUMG00000152600 NG_026542 PGOHUM00000233148 +HGNC:39063 AK3P4 adenylate kinase 3 pseudogene 4 pseudogene pseudogene Approved 5q22.3 05q22.3 2010-09-29 2014-11-19 100129959 ENSG00000248722 OTTHUMG00000162914 NG_028719 PGOHUM00000235732 +HGNC:39064 AK3P5 adenylate kinase 3 pseudogene 5 pseudogene pseudogene Approved 10p11.22 10p11.22 2010-09-30 2014-11-19 100288319 ENSG00000228816 OTTHUMG00000017931 NG_022166 PGOHUM00000238717 +HGNC:39065 AK3P6 adenylate kinase 3 pseudogene 6 pseudogene pseudogene Approved 12q24.33 12q24.33 2010-09-30 2014-11-18 100873789 NG_032224 PGOHUM00000239611 +HGNC:363 AK4 adenylate kinase 4 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "AK3|AK3L1" "adenylate kinase 3|adenylate kinase 3-like 1" Adenylate kinases 356 2001-06-22 2010-06-15 2010-06-15 2014-11-19 205 ENSG00000162433 OTTHUMG00000009033 uc001dby.3 AK025926 NM_013410 "CCDS629|CCDS81340" P27144 11485571 MGI:87979 RGD:2078 AK4 103030 2.7.4.3 +HGNC:364 AK4P1 adenylate kinase 4 pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 AK3P1 adenylate kinase 3 pseudogene 1 1992-06-24 2010-09-30 2010-09-30 2011-06-28 206 ENSG00000263535 OTTHUMG00000179256 X60674 NG_001070 1639383 +HGNC:39066 AK4P2 adenylate kinase 4 pseudogene 2 pseudogene pseudogene Approved 5q11.2 05q11.2 2010-09-30 2014-11-19 100132104 ENSG00000249410 OTTHUMG00000162238 NG_021849 PGOHUM00000235224 +HGNC:21596 AK4P3 adenylate kinase 4 pseudogene 3 pseudogene pseudogene Approved 12p11.22 12p11.22 AK3L2P AK3L2 "adenylate kinase 3-like 2|adenylate kinase 3-like 2 (pseudogene)" 2004-03-11 2010-09-30 2010-09-30 2014-11-19 645619 ENSG00000233381 NG_007564 +HGNC:39067 AK4P4 adenylate kinase 4 pseudogene 4 pseudogene pseudogene Approved 9p24.1 09p24.1 2010-09-30 2010-09-30 100128705 ENSG00000223621 OTTHUMG00000019509 NG_021605 PGOHUM00000235956 +HGNC:39068 AK4P5 adenylate kinase 4 pseudogene 5 pseudogene pseudogene Approved 6q14.1 06q14.1 2010-09-30 2014-11-19 100526416 ENSG00000217377 OTTHUMG00000015090 NG_027847 PGOHUM00000261423 +HGNC:39069 AK4P6 adenylate kinase 4 pseudogene 6 pseudogene pseudogene Approved 4q31.3 04q31.3 2010-09-30 2010-09-30 649288 ENSG00000235606 OTTHUMG00000161449 NG_022085 PGOHUM00000246100 +HGNC:365 AK5 adenylate kinase 5 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 Adenylate kinases 356 1999-11-19 2016-10-05 26289 ENSG00000154027 OTTHUMG00000009796 uc001dhn.4 AF062595 NM_174858 "CCDS675|CCDS676" Q9Y6K8 10215863 MGI:2677491 RGD:1590818 AK5 608009 +HGNC:49151 AK6 adenylate kinase 6 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 CINAP coilin interacting nuclear ATPase protein Adenylate kinases 356 2013-09-19 2015-08-27 102157402 ENSG00000085231 OTTHUMG00000187252 NM_016283 Q9Y3D8 16079131 MGI:5510732 RGD:7387335 2.7.4.3 +HGNC:51678 AK6P1 adenylate kinase 6 pseudogene 1 pseudogene pseudogene Approved 12p11.1 12p11.1 2015-05-06 2015-05-06 100132086 ENSG00000256614 OTTHUMG00000169291 PGOHUM00000291621 +HGNC:51679 AK6P2 adenylate kinase 6 pseudogene 2 pseudogene pseudogene Approved 12q12 12q12 2015-05-06 2015-05-06 100128817 ENSG00000257173 OTTHUMG00000169296 PGOHUM00000291295 +HGNC:20091 AK7 adenylate kinase 7 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 FLJ32864 Adenylate kinases 356 2002-12-17 2016-10-05 122481 ENSG00000140057 OTTHUMG00000171421 uc001yfn.3 AK057426 XM_006720021 CCDS9945 Q96M32 MGI:1926051 RGD:1309600 AK7 615364 +HGNC:26526 AK8 adenylate kinase 8 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 FLJ32704 C9orf98 chromosome 9 open reading frame 98 Adenylate kinases 356 2004-03-11 2010-12-07 2010-12-07 2014-11-19 158067 ENSG00000165695 OTTHUMG00000021009 uc004cbu.2 AK093446 NM_152572 CCDS6954 Q96MA6 21080915 MGI:1916120 RGD:1303144 AK8 615365 2.7.4.3 +HGNC:33814 AK9 adenylate kinase 9 protein-coding gene gene with protein product Approved 6q21 06q21 "FLJ42177|FLJ25791|dJ70A9.1|MGC26954" "C6orf224|AKD2|C6orf199|AKD1" "chromosome 6 open reading frame 224|adenylate kinase domain containing 2|chromosome 6 open reading frame 199|adenylate kinase domain containing 1" Adenylate kinases 356 2009-03-13 2013-04-29 2013-04-29 2015-10-15 221264 ENSG00000155085 OTTHUMG00000157658 "AK131244|BC146443|BC087860" NM_001145128 "CCDS5077|CCDS55048" Q5TCS8 23416111 MGI:2685080 RGD:1559879 615358 2.7.4.3 +HGNC:28285 AKAIN1 A-kinase anchor inhibitor 1 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 C18orf42 "chromosome 18 open reading frame 42|A kinase (PRKA) anchor inhibitor 1" 2011-05-06 2016-04-19 2016-09-26 2016-09-26 642597 ENSG00000231824 OTTHUMG00000178457 uc010wzc.2 NM_001145194 "CCDS54179|CCDS82235" P0CW23 25653177 MGI:2444600 RGD:2324352 616427 +HGNC:367 AKAP1 A-kinase anchoring protein 1 protein-coding gene gene with protein product Approved 17q22 17q22 "AKAP121|AKAP149|SAKAP84|S-AKAP84|AKAP84|D-AKAP1|PPP1R43|TDRD17" "protein kinase anchoring protein 1|dual specificity A-kinase-anchoring protein 1|protein phosphatase 1, regulatory subunit 43|tudor domain containing 17" PRKA1 A kinase (PRKA) anchor protein 1 "A-kinase anchoring proteins|Protein phosphatase 1 regulatory subunits|Tudor domain containing" "396|694|780" 1999-09-16 2015-11-17 2015-11-17 8165 ENSG00000121057 OTTHUMG00000140369 uc002iux.4 X97335 XM_005257707 CCDS11594 Q92667 "8769136|7499250" MGI:104729 RGD:620826 AKAP1 602449 +HGNC:372 AKAP2 A-kinase anchoring protein 2 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "AKAP-KL|KIAA0920|DKFZp564L0716|MISP2" protein kinase A2 PRKA2 A kinase (PRKA) anchor protein 2 A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2016-07-08 11217 ENSG00000241978 OTTHUMG00000156811 uc004bem.4 AB023137 NM_001004065 "CCDS43861|CCDS48003|CCDS56581" Q9Y2D5 10231032 MGI:1306795 RGD:1305135 AKAP2 604582 +HGNC:373 AKAP3 A-kinase anchoring protein 3 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 "FSP95|SOB1|AKAP110|CT82" "Fibrous Sheath Protein of 95 kDa|cancer/testis antigen 82" A kinase (PRKA) anchor protein 3 A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2015-11-17 10566 ENSG00000111254 OTTHUMG00000168226 uc031qfv.2 U85715 NM_006422 CCDS8531 O75969 "10334916|10319321" MGI:1341149 RGD:1359735 AKAP3 604689 +HGNC:374 AKAP4 A-kinase anchoring protein 4 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "p82|hAKAP82|AKAP82|Fsc1|HI|CT99" "A-kinase anchor protein 82 kDa|testis-specific gene HI|protein kinase A anchoring protein 4|cancer/testis antigen 99" A kinase (PRKA) anchor protein 4 A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2016-10-05 8852 ENSG00000147081 OTTHUMG00000021517 uc004dow.1 AF072756 NM_003886 "CCDS14329|CCDS14330" Q5JQC9 "9822690|9514854" MGI:102794 RGD:620828 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AKAP4 AKAP4 300185 +HGNC:375 AKAP5 A-kinase anchoring protein 5 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "AKAP75|AKAP79" A kinase (PRKA) anchor protein 5 A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2015-11-17 9495 ENSG00000179841 OTTHUMG00000029634 uc001xhd.4 M90359 NM_004857 CCDS9764 P24588 "1512224|1618839" MGI:2685104 RGD:620829 AKAP5 604688 +HGNC:376 AKAP6 A-kinase anchoring protein 6 protein-coding gene gene with protein product Approved 14q12 14q12 "KIAA0311|mAKAP|AKAP100|PRKA6|ADAP6" protein kinase A anchoring protein 6 A kinase (PRKA) anchor protein 6 A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2015-11-17 9472 ENSG00000151320 OTTHUMG00000140207 uc001wrq.4 AB002309 NM_004274 CCDS9644 Q13023 "7721854|9205841" MGI:3050566 RGD:69412 AKAP6 604691 +HGNC:377 AKAP7 A-kinase anchoring protein 7 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "AKAP18|AKAP15" A kinase (PRKA) anchor protein 7 A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2016-04-25 9465 ENSG00000118507 OTTHUMG00000015563 uc003qck.5 AF047715 NM_004842 "CCDS5142|CCDS5143|CCDS5144" "O43687|Q9P0M2" 9545239 MGI:1859150 RGD:1303071 AKAP7 604693 +HGNC:378 AKAP8 A-kinase anchoring protein 8 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "AKAP95|DKFZp586B1222" A-kinase anchor protein, 95kDa A kinase (PRKA) anchor protein 8 A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2015-11-17 10270 ENSG00000105127 OTTHUMG00000182444 uc002nav.4 Y11997 NM_005858 CCDS12329 O43823 9473338 MGI:1928488 RGD:620832 AKAP8 604692 +HGNC:29857 AKAP8L A-kinase anchoring protein 8 like protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "NAKAP95|HAP95" neighbor of A kinase anchoring protein 95 A kinase (PRKA) anchor protein 8-like 2004-02-18 2015-11-17 2015-11-17 26993 ENSG00000011243 OTTHUMG00000182446 uc002naw.2 BC000713 NM_014371 "CCDS46005|CCDS77249" Q9ULX6 "10748171|10761695" MGI:1860606 RGD:1359200 AKAP8L 609475 +HGNC:49758 AKAP8P1 A-kinase anchoring protein 8 pseudogene 1 pseudogene pseudogene Approved 9p23 09p23 A kinase (PRKA) anchor protein 8 pseudogene 1 2014-02-14 2015-11-17 2015-11-17 646114 ENSG00000234146 OTTHUMG00000019553 NG_021607 PGOHUM00000235963 +HGNC:379 AKAP9 A-kinase anchoring protein 9 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 "KIAA0803|AKAP350|AKAP450|CG-NAP|YOTIAO|HYPERION|PRKA9|MU-RMS-40.16A|PPP1R45|LQT11" "A-kinase anchoring protein 450|AKAP9-BRAF fusion protein|AKAP120-like protein|centrosome- and golgi-localized protein kinase N-associated protein|protein kinase A anchoring protein 9|A-kinase anchor protein, 350kDa|protein phosphatase 1, regulatory subunit 45|yotiao" A kinase (PRKA) anchor protein 9 "A-kinase anchoring proteins|Protein phosphatase 1 regulatory subunits" "396|694" 1999-09-16 2015-11-17 2016-10-12 10142 ENSG00000127914 OTTHUMG00000131127 uc003ulg.4 AF091711 NM_005751 CCDS5622 Q99996 "9482789|10390370|24475373" MGI:2178217 RGD:620833 "AKAP9 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=AKAP9|LRG_331|http://www.lrg-sequence.org/LRG/LRG_331" AKAP9 604001 160008 +HGNC:368 AKAP10 A-kinase anchoring protein 10 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "D-AKAP2|PRKA10|MGC9414" "dual-specificity A-kinase anchoring protein 2|protein kinase A anchoring protein 10|mitochondrial A kinase PPKA anchor protein 10" A kinase (PRKA) anchor protein 10 A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2016-10-05 11216 ENSG00000108599 OTTHUMG00000059515 uc002gwo.5 AF037439 NM_007202 "CCDS11214|CCDS82091" O43572 9326583 MGI:1890218 RGD:1308869 AKAP10 604694 +HGNC:369 AKAP11 A-kinase anchoring protein 11 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "KIAA0629|AKAP220|PRKA11|FLJ11304|DKFZp781I12161|PPP1R44" "AKAP 220|A-kinase anchoring protein, 220kDa|protein kinase A anchoring protein 11|protein phosphatase 1, regulatory subunit 44" A kinase (PRKA) anchor protein 11 "A-kinase anchoring proteins|Protein phosphatase 1 regulatory subunits" "396|694" 1999-09-16 2015-11-17 2016-10-05 11215 ENSG00000023516 OTTHUMG00000016805 uc001uys.2 AB014529 NM_016248 CCDS9383 Q9UKA4 "9734811|8621616" MGI:2684060 RGD:2079 AKAP11 604696 +HGNC:39939 AKAP11-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:370 AKAP12 A-kinase anchoring protein 12 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "AKAP250|SSeCKS" "gravin|Src-Suppressed C Kinase Substrate" "A kinase (PRKA) anchor protein (gravin) 12|A kinase (PRKA) anchor protein 12" A-kinase anchoring proteins 396 1999-09-16 2015-11-17 2016-10-05 9590 ENSG00000131016 OTTHUMG00000015833 uc011eep.4 U81607 XM_017011517 "CCDS5229|CCDS5230" Q02952 9000000 MGI:1932576 RGD:70988 AKAP12 604698 +HGNC:371 AKAP13 A-kinase anchoring protein 13 protein-coding gene gene with protein product Approved 15q25.3 15q25.3 "Ht31|BRX|AKAP-Lbc|c-lbc|PROTO-LB|HA-3|ARHGEF13" LBC "lymphoid blast crisis oncogene|A kinase (PRKA) anchor protein 13" "A-kinase anchoring proteins|Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|Minor histocompatibility antigens" "396|682|722|870" 1999-09-16 2015-11-17 2016-01-14 11214 ENSG00000170776 OTTHUMG00000172205 uc002blu.3 M90360 NM_007200 "CCDS32319|CCDS32320|CCDS73778" Q12802 "9627117|1860836" MGI:2676556 RGD:727893 AKAP13 604686 +HGNC:24061 AKAP14 A-kinase anchoring protein 14 protein-coding gene gene with protein product Approved Xq24 Xq24 AKAP28 A kinase (PRKA) anchor protein 14 A-kinase anchoring proteins 396 2004-09-09 2015-11-17 2015-11-17 158798 ENSG00000186471 OTTHUMG00000022285 uc004ese.4 AF514780 NM_178813 "CCDS14591|CCDS35376|CCDS35377" Q86UN6 12475942 MGI:3618288 RGD:708510 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AKAP14 AKAP14 300462 +HGNC:18783 AKAP17A A-kinase anchoring protein 17A protein-coding gene gene with protein product Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 "XE7|XE7Y|DXYS155E|MGC39904|721P|CCDC133" "CXYorf3|SFRS17A" "chromosome X and Y open reading frame 3|splicing factor, arginine/serine-rich 17A|A kinase (PRKA) anchor protein 17A" "A-kinase anchoring proteins|Pseudoautosomal region 1" "396|715" 2006-09-22 2010-09-08 2015-11-17 2015-11-17 8227 ENSG00000197976 OTTHUMG00000021063 uc004fpn.4 L03426 NM_005088 CCDS14116 Q02040 "9736779|1438229|19840947" RGD:1564640 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SFRS17A AKAP17A "312095|465000" +HGNC:38514 AKAP17BP A-kinase anchoring protein 17B, pseudogene pseudogene pseudogene Approved Xq24 Xq24 "AKAP16B|AKAP16BP" "A kinase (PRKA) anchor protein 16B, pseudogene|A kinase (PRKA) anchor protein 17B, pseudogene" A-kinase anchoring proteins 396 2010-09-08 2013-10-16 2015-11-17 2015-11-17 139516 ENSG00000214992 OTTHUMG00000022267 NG_022632 17302988 MGI:2443758 PGOHUM00000241516 +HGNC:1170 AKIP1 A-kinase interacting protein 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 BCA3 C11orf17 "chromosome 11 open reading frame 17|A kinase (PRKA) interacting protein 1" 2000-07-31 2011-04-18 2015-11-24 2016-10-05 56672 ENSG00000166452 OTTHUMG00000165653 uc001mgx.4 AF512007 NM_020642 "CCDS7793|CCDS55743|CCDS55744" Q9NQ31 "20562110|18178962|15630084" MGI:3041226 RGD:1306959 AKIP1 609191 +HGNC:25744 AKIRIN1 akirin 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ12666 C1orf108 chromosome 1 open reading frame 108 2005-06-03 2008-06-23 2008-06-23 2014-11-18 79647 ENSG00000174574 OTTHUMG00000007496 uc001ccw.4 AK022728 NM_024595 "CCDS433|CCDS44113" Q9H9L7 19200367 MGI:1915300 RGD:1585989 AKIRIN1 615164 +HGNC:50794 AKIRIN1P1 akirin 1 pseudogene 1 pseudogene pseudogene Approved 12q21.31 12q21.31 2014-06-18 2014-06-18 100418731 ENSG00000257786 OTTHUMG00000170163 NG_024033 PGOHUM00000239529 +HGNC:50797 AKIRIN1P2 akirin 1 pseudogene 2 pseudogene pseudogene Approved Xq12 Xq12 2014-06-18 2014-06-18 2014-06-18 2014-06-18 106480306 ENSG00000228125 OTTHUMG00000021742 NG_044308 PGOHUM00000241824 +HGNC:21407 AKIRIN2 akirin 2 protein-coding gene gene with protein product Approved 6q15 06q15 "FLJ10342|dJ486L4.2" C6orf166 chromosome 6 open reading frame 166 2003-06-12 2008-06-23 2008-06-23 2014-11-19 55122 ENSG00000135334 OTTHUMG00000015180 uc003pmk.4 BC000764 NM_018064 CCDS5013 Q53H80 MGI:1889364 RGD:1307791 AKIRIN2 615165 +HGNC:28822 AKIRIN2-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:50796 AKIRIN2P1 akirin 2 pseudogene 1 pseudogene pseudogene Approved 4q31.23 04q31.23 2014-06-18 2014-06-18 100216487 ENSG00000251482 OTTHUMG00000161391 NG_009119 PGOHUM00000246099 +HGNC:24108 AKNA AT-hook transcription factor protein-coding gene gene with protein product Approved 9q32 09q32 KIAA1968 2004-05-27 2015-08-24 80709 ENSG00000106948 OTTHUMG00000020538 uc004bis.5 AK024431 NM_030767 CCDS6805 Q7Z591 "11268217|11853319" MGI:2140340 RGD:1308202 AKNA 605729 +HGNC:28398 AKNAD1 AKNA domain containing 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 MGC26989 C1orf62 chromosome 1 open reading frame 62 2005-05-13 2009-10-29 2009-10-29 2015-08-24 254268 ENSG00000162641 OTTHUMG00000011231 uc001dwa.5 AK095517 NM_152763 CCDS791 Q5T1N1 MGI:3584453 RGD:1583957 AKNAD1 +HGNC:380 AKR1A1 aldo-keto reductase family 1 member A1 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "ALR|DD3" "dihydrodiol dehydrogenase 3|aldehyde reductase" aldo-keto reductase family 1, member A1 (aldehyde reductase) Aldo-keto reductases 399 1998-09-29 2016-06-03 2016-10-05 10327 ENSG00000117448 OTTHUMG00000007740 uc001cod.4 J04794 NM_006066 CCDS523 P14550 "2498333|10393438" MGI:1929955 RGD:68346 AKR1A1 103830 1.1.1.2 +HGNC:381 AKR1B1 aldo-keto reductase family 1 member B protein-coding gene gene with protein product Approved 7q33 07q33 AR aldose reductase ALDR1 aldo-keto reductase family 1, member B1 (aldose reductase) Aldo-keto reductases 399 1991-08-07 2016-06-03 2016-10-05 231 ENSG00000085662 OTTHUMG00000155322 uc003vrp.2 J04795 NM_001628 CCDS5831 P15121 1901827 MGI:1353494 RGD:2092 AKR1B1 103880 objectId:2768 1.1.1.21 +HGNC:420 AKR1B1P1 aldehyde reductase family 1 member B1 pseudogene 1 pseudogene pseudogene Approved 1q42.12 01q42.12 ALDRL1 aldehyde reductase (aldose reductase)-like 1 1992-03-25 2007-07-31 2016-06-03 2016-06-03 401982 ENSG00000229991 OTTHUMG00000037720 NG_006432 8244370 PGOHUM00000245220 +HGNC:425 AKR1B1P2 aldo-keto reductase family 1 member B1 pseudogene 2 pseudogene pseudogene Approved 3p12.3 03p12.3 ALDRP aldehyde reductase (aldose reductase) pseudogene 1991-11-25 2007-07-31 2016-06-03 2016-06-03 236 ENSG00000213452 OTTHUMG00000158811 M84454 NG_001071 "1612607|8244370" PGOHUM00000238068 +HGNC:422 AKR1B1P3 aldo-keto reductase family 1 member B1 pseudogene 3 pseudogene pseudogene Approved 11p15.2 11p15.2 ALDRL3 aldehyde reductase (aldose reductase)-like 3 1992-03-25 2007-07-31 2016-06-03 2016-10-04 729347 ENSG00000213785 OTTHUMG00000165909 NG_007132 8244370 PGOHUM00000290404 +HGNC:423 AKR1B1P4 aldo-keto reductase family 1 member B1 pseudogene 4 pseudogene pseudogene Approved 13q14.13 13q14.13 ALDRL4 aldehyde reductase (aldose reductase)-like 4 1992-03-25 2007-07-31 2016-06-03 2016-10-05 390402 ENSG00000237876 OTTHUMG00000016860 NG_006989 8244370 PGOHUM00000248391 +HGNC:20002 AKR1B1P5 aldo-keto reductase family 1 member B1 pseudogene 5 pseudogene pseudogene Approved 14q23.1 14q23.1 AKR1B1P aldo-keto reductase family 1, member B1 pseudogene 2003-10-03 2007-07-31 2016-06-03 2016-06-03 390482 NG_007013 PGOHUM00000247814 +HGNC:33498 AKR1B1P6 aldo-keto reductase family 1 member B1 pseudogene 6 pseudogene pseudogene Approved 18p11.22 18p11.22 2007-07-31 2016-06-03 2016-06-03 100129769 ENSG00000225212 OTTHUMG00000178948 NG_017129 +HGNC:33497 AKR1B1P7 aldo-keto reductase family 1 member B1 pseudogene 7 pseudogene pseudogene Approved 19q13.11 19q13.11 2007-07-31 2016-06-03 2016-07-25 126242 ENSG00000266899 OTTHUMG00000182176 NG_009664 PGOHUM00000294975 +HGNC:33496 AKR1B1P8 aldo-keto reductase family 1 member B1 pseudogene 8 pseudogene pseudogene Approved Xq23 Xq23 2007-07-31 2016-06-03 2016-06-03 392525 ENSG00000231371 OTTHUMG00000022241 NG_009682 AKR1B1P8 PGOHUM00000241963 +HGNC:382 AKR1B10 aldo-keto reductase family 1 member B10 protein-coding gene gene with protein product Approved 7q33 07q33 "AKR1B12|ARL-1|HIS|ARL1|HSI|ALDRLn" "aldose reductase-like 1|aldo-keto reductase family 1, member B11 (aldose reductase-like)|aldose reductase-like peptide|aldose reductase-related protein|small intestine reductase" AKR1B11 aldo-keto reductase family 1, member B10 (aldose reductase) Aldo-keto reductases 399 2000-08-24 2016-06-03 2016-06-03 57016 ENSG00000198074 OTTHUMG00000155356 uc003vrr.4 AF052577 NM_020299 CCDS5832 O60218 "9765596|9565553" "MGI:101918|MGI:107673|MGI:1915111" RGD:1308277 AKR1B10 604707 +HGNC:45062 AKR1B10P1 aldo-keto reductase family 1 member B10 pseudogene 1 pseudogene pseudogene Approved 10q21.3 10q21.3 2013-02-07 2016-06-03 2016-06-03 340888 ENSG00000213606 OTTHUMG00000018335 NG_022180 PGOHUM00000238821 +HGNC:45063 AKR1B10P2 aldo-keto reductase family 1 member B10 pseudogene 2 pseudogene pseudogene Approved 18q22.1 18q22.1 2013-02-07 2016-06-03 2016-06-03 643582 ENSG00000263355 OTTHUMG00000178549 NG_022495 PGOHUM00000235092 +HGNC:37281 AKR1B15 aldo-keto reductase family 1 member B15 protein-coding gene gene with protein product Approved 7q33 07q33 Aldo-keto reductases 399 2009-09-09 2016-06-03 2016-06-03 441282 ENSG00000227471 OTTHUMG00000155376 uc011kpr.3 XM_017012224 CCDS47715 C9JRZ8 "MGI:101918|MGI:107673|MGI:1915111" AKR1B15 616336 +HGNC:384 AKR1C1 aldo-keto reductase family 1 member C1 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "DDH|MBAB|DD1|HAKRC" dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase DDH1 aldo-keto reductase family 1, member C1 (dihydrodiol dehydrogenase 1; 20-alpha (3-alpha)-hydroxysteroid dehydrogenase) Aldo-keto reductases 399 1994-09-14 2016-06-03 2016-10-05 1645 ENSG00000187134 OTTHUMG00000017580 uc001ihq.4 D26124 NM_001353 CCDS7061 Q04828 8011662 MGI:1924587 AKR1C1 600449 "1.3.1.20|1.1.1.149|1.1.1.112" +HGNC:385 AKR1C2 aldo-keto reductase family 1 member C2 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "DD|BABP|DD2|HAKRD|MCDR2" dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III "DDH2|TDD" "aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase 2; bile acid binding protein; 3-alpha hydroxysteroid dehydrogenase, type III)|testicular 17,20-desmolase deficiency" Aldo-keto reductases 399 1994-09-14 2016-06-03 2016-10-05 1646 ENSG00000151632 OTTHUMG00000017584 uc057rik.1 L32592 NM_001354 "CCDS7062|CCDS44350|CCDS81438" P52895 "9716498|21802064" MGI:1924587 RGD:1311841 AKR1C2 600450 292247 "1.3.1.20|1.1.1.213" +HGNC:386 AKR1C3 aldo-keto reductase family 1 member C3 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "KIAA0119|DDX|HAKRB|PGFS" "dihydrodiol dehydrogenase X|prostaglandin F synthase|3-alpha hydroxysteroid dehydrogenase, type II" HSD17B5 "hydroxysteroid (17-beta) dehydrogenase 5|aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II)" Aldo-keto reductases 399 1998-09-29 2016-06-03 2016-10-05 8644 ENSG00000196139 OTTHUMG00000017585 uc001ihu.4 L43839 NM_003739 "CCDS7063|CCDS73062" P42330 "7650035|9792917" MGI:2145420 RGD:708428 AKR1C3 603966 objectId:1382 "1.1.1.213|1.1.1.188" +HGNC:387 AKR1C4 aldo-keto reductase family 1 member C4 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "DD4|HAKRA|C11|3-alpha-HSD|CDR|MGC22581" chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4 CHDR aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4) Aldo-keto reductases 399 1993-08-26 2016-06-03 2016-06-03 1109 ENSG00000198610 OTTHUMG00000017591 uc057rjf.1 M33375 NM_001818 CCDS7064 P17516 7789999 MGI:1933427 RGD:1306847 AKR1C4 600451 292259 1.1.1.225 +HGNC:44679 AKR1C5P aldo-keto reductase family 1 member C5, pseudogene pseudogene pseudogene Approved 10p15.1 10p15.1 aldo-keto reductase family 1, member C5, pseudogene 2012-12-04 2016-06-03 2016-06-03 100996684 ENSG00000225418 OTTHUMG00000017583 PGOHUM00000262838 +HGNC:44680 AKR1C6P aldo-keto reductase family 1 member C6, pseudogene pseudogene pseudogene Approved 10p15.1 10p15.1 TAKR truncated aldo-keto reductase 2012-12-04 2016-06-03 2016-06-03 389932 ENSG00000151631 OTTHUMG00000017578 NR_026743 PGOHUM00000258456 +HGNC:44681 AKR1C7P aldo-keto reductase family 1 member C7, pseudogene pseudogene pseudogene Approved 10p15.1 10p15.1 2012-12-04 2016-06-03 2016-06-03 648947 ENSG00000215267 OTTHUMG00000017588 NG_023403 PGOHUM00000238338 +HGNC:23469 AKR1C8P aldo-keto reductase family 1 member C8, pseudogene pseudogene pseudogene Approved 10p15.1 10p15.1 AKR1CL1 aldo-keto reductase family 1, member C-like 1 2004-05-28 2014-09-30 2016-06-03 2016-06-03 340811 ENSG00000264006 OTTHUMG00000184213 NR_027916 Q5T2L2 15164054 PGOHUM00000289729 +HGNC:388 AKR1D1 aldo-keto reductase family 1 member D1 protein-coding gene gene with protein product Approved 7q33 07q33 delta 4-3-ketosteroid-5-beta-reductase SRD5B1 aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) Aldo-keto reductases 399 1995-11-02 2016-06-03 2016-10-05 6718 ENSG00000122787 OTTHUMG00000155787 uc064ijt.1 Z28339 NM_005989 "CCDS5846|CCDS55169|CCDS55170" P51857 "7508385|10343119" MGI:2384785 RGD:620752 AKR1D1 604741 139142 1.3.99.6 +HGNC:11288 AKR1D1P1 aldo-keto reductase family 1 member D1 pseudogene 1 pseudogene pseudogene Approved 1q24.2 01q24.2 "SRD5BP1|AKR1D1P" "steroid-5-beta-reductase, beta polypeptide pseudogene 1|aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) pseudogene" 1999-01-07 2010-01-19 2016-06-03 2016-06-03 80701 ENSG00000227776 OTTHUMG00000034681 AF283650 NG_002683 10343119 PGOHUM00000245070 +HGNC:23437 AKR1E2 aldo-keto reductase family 1 member E2 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 MGC10612 "AKRDC1|AKR1CL2" aldo-keto reductase family 1, member C-like 2 Aldo-keto reductases 399 2003-11-18 2009-09-09 2016-06-03 2016-10-05 83592 ENSG00000165568 OTTHUMG00000017577 uc001ihi.5 AB040820 NM_031436 "CCDS31134|CCDS59210|CCDS59209" Q96JD6 MGI:1914758 RGD:1309599 AKR1E2 +HGNC:389 AKR7A2 aldo-keto reductase family 7 member A2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 AFAR aflatoxin aldehyde reductase Aldo-keto reductases 399 1998-11-17 2016-06-03 2016-06-03 8574 ENSG00000053371 OTTHUMG00000002522 uc001bbw.4 AF026947 NM_003689 CCDS194 O43488 9576847 MGI:107796 RGD:620311 AKR7A2 603418 +HGNC:24062 AKR7A2P1 aldo-keto reductase family 7 member A2 pseudogene 1 pseudogene pseudogene Approved 1p13.2 01p13.2 AFARP1 2010-09-30 2016-06-03 2016-06-03 246182 ENSG00000229020 OTTHUMG00000012135 AJ277796 NR_002796 12879023 PGOHUM00000244853 +HGNC:390 AKR7A3 aldo-keto reductase family 7 member A3 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 aflatoxin aldehyde reductase aldo-keto reductase family 7, member A3 (aflatoxin aldehyde reductase) Aldo-keto reductases 399 1999-10-05 2016-06-03 2016-06-03 22977 ENSG00000162482 OTTHUMG00000002523 uc001bbv.2 AF040639 NM_012067 CCDS193 O95154 10383892 MGI:107796 RGD:628635 AKR7A3 608477 +HGNC:24056 AKR7L aldo-keto reductase family 7 like (gene/pseudogene) protein-coding gene gene with protein product Approved 1p36.13 01p36.13 AFAR3 aldo-keto reductase family 7-like 2008-12-09 2016-06-03 2016-10-05 246181 ENSG00000211454 OTTHUMG00000002520 uc057cwi.1 NM_201252 Q8NHP1 12879023 AKR7L 608478 +HGNC:391 AKT1 AKT serine/threonine kinase 1 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "RAC|PKB|PRKBA|AKT" v-akt murine thymoma viral oncogene homolog 1 Pleckstrin homology domain containing 682 1986-01-01 2016-05-04 2016-10-12 207 ENSG00000142208 OTTHUMG00000170795 uc001ypm.4 M63167 NM_005163 CCDS9994 P31749 MGI:87986 RGD:2081 LRG_721|http://www.lrg-sequence.org/LRG/LRG_721 AKT1 164730 281472 objectId:1479 2.7.11.1 +HGNC:28426 AKT1S1 AKT1 substrate 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "PRAS40|MGC2865|Lobe" proline-rich Akt substrate, 40 kDa AKT1 substrate 1 (proline-rich) MTOR complex 1 1332 2004-03-04 2016-04-26 2016-04-26 84335 ENSG00000204673 OTTHUMG00000150246 uc031rmg.1 BC022241 NM_032375 "CCDS12784|CCDS59410" Q96B36 12524439 MGI:1914855 RGD:1312049 AKT1S1 610221 +HGNC:392 AKT2 AKT serine/threonine kinase 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 v-akt murine thymoma viral oncogene homolog 2 Pleckstrin homology domain containing 682 1992-11-05 2016-05-04 2016-10-05 208 ENSG00000105221 OTTHUMG00000137375 uc002onf.3 M77198 NM_001626 "CCDS12552|CCDS82350" P31751 1409633 MGI:104874 RGD:2082 AKT2 164731 201112 objectId:1480 2.7.11.1 +HGNC:393 AKT3 AKT serine/threonine kinase 3 protein-coding gene gene with protein product Approved 1q43-q44 01q43-q44 "PKBG|RAC-gamma|PRKBG" protein kinase B, gamma v-akt murine thymoma viral oncogene homolog 3 Pleckstrin homology domain containing 682 1999-11-16 2016-05-04 2016-10-11 10000 ENSG00000117020 OTTHUMG00000039994 uc057qvr.1 AF124141 NM_181690 "CCDS31076|CCDS31077" Q9Y243 "10092583|10208883" MGI:1345147 RGD:62390 AKT3 611223 299660 objectId:2286 2.7.11.1 +HGNC:41304 AKT3-IT1 AKT3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q44 01q44 AKT3 intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100874263 ENSG00000228939 OTTHUMG00000039993 uc057qwa.1 +HGNC:16710 AKTIP AKT interacting protein protein-coding gene gene with protein product Approved 16q12.2 16q12.2 FLJ13258 FTS "fused toes (mouse) homolog|fused toes homolog (mouse)" Ubiquitin conjugating enzymes E2 102 2001-10-02 2007-01-16 2007-01-16 2014-11-18 64400 ENSG00000166971 OTTHUMG00000133199 uc002ehl.4 AK023320 NM_022476 "CCDS10749|CCDS76866" Q9H8T0 "7818539|8626685" MGI:3693832 RGD:1311170 AKTIP 608483 +HGNC:395 ALAD aminolevulinate dehydratase protein-coding gene gene with protein product Approved 9q32 09q32 "ALADH|PBGS" porphobilinogen synthase aminolevulinate, delta-, dehydratase 1986-01-01 2010-04-29 2014-11-19 210 ENSG00000148218 OTTHUMG00000020522 uc011lxf.3 M13928 NM_001003945 CCDS6794 P13716 "6839527|6378062" MGI:96853 RGD:2083 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ ALAD 125270 119569 4.2.1.24 +HGNC:396 ALAS1 5'-aminolevulinate synthase 1 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "ALAS3|ALAS" aminolevulinate, delta-, synthase 1 1986-01-01 2014-11-19 2016-10-05 211 ENSG00000023330 OTTHUMG00000158108 uc062kkd.1 X56351 XM_011533478 CCDS2847 P13196 MGI:87989 RGD:68392 ALAS1 125290 2.3.1.37 +HGNC:397 ALAS2 5'-aminolevulinate synthase 2 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 sideroblastic/hypochromic anemia ASB "aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia)|aminolevulinate, delta-, synthase 2" 1989-05-25 2014-11-19 2015-09-11 212 ENSG00000158578 OTTHUMG00000021641 uc004dua.4 NM_000032 "CCDS14366|CCDS35303|CCDS43960" P22557 1577484 MGI:87990 RGD:2084 ALAS2 301300 119573 2.3.1.37 +HGNC:399 ALB albumin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 1986-01-01 2006-06-30 2006-06-30 2014-11-18 213 ENSG00000163631 OTTHUMG00000129919 uc003hgs.5 V00494 NM_000477 CCDS3555 P02768 "6292049|6192711" MGI:87991 RGD:2085 Albumin mutation database|http://www.albumin.org/ ALB 103600 119576 +HGNC:400 ALCAM activated leukocyte cell adhesion molecule protein-coding gene gene with protein product Approved 3q13.11 03q13.11 "CD166|MEMD" activated leucocyte cell adhesion molecule "CD molecules|V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "471|590|592|594" 1997-01-17 2002-08-08 2016-10-05 214 ENSG00000170017 OTTHUMG00000159192 uc003dvx.4 AK054632 NM_001627 "CCDS33810|CCDS58841" Q13740 7760007 MGI:1313266 RGD:619972 ALCAM 601662 CD166 +HGNC:402 ALDH1A1 aldehyde dehydrogenase 1 family member A1 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 RALDH1 retinaldehyde dehydrogenase 1 "PUMB1|ALDH1" aldehyde dehydrogenase 1 family, member A1 Aldehyde dehydrogenases 398 1986-01-01 2015-11-18 2015-11-18 216 ENSG00000165092 OTTHUMG00000020019 uc004ajd.4 K03000 NM_000689 CCDS6644 P00352 1709013 "MGI:1347050|MGI:1353450" RGD:2087 Human Polymorphisms of ALDH Genes|http://www.aldh.org ALDH1A1 100640 1.2.1.36 +HGNC:15472 ALDH1A2 aldehyde dehydrogenase 1 family member A2 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 RALDH2 retinaldehyde dehydrogenase 2 aldehyde dehydrogenase 1 family, member A2 Aldehyde dehydrogenases 398 2001-03-30 2015-11-18 2016-10-05 8854 ENSG00000128918 OTTHUMG00000132624 uc002aex.4 AB015228 NM_003888 "CCDS10163|CCDS10164|CCDS45266|CCDS55968" O94788 9819382 MGI:107928 RGD:620250 ALDH1A2 603687 +HGNC:409 ALDH1A3 aldehyde dehydrogenase 1 family member A3 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 RALDH3 retinaldehyde dehydrogenase 3 ALDH6 aldehyde dehydrogenase 1 family, member A3 Aldehyde dehydrogenases 398 1994-07-07 2015-11-18 2015-11-18 220 ENSG00000184254 OTTHUMG00000186439 uc002bwn.5 U07919 NM_000693 "CCDS10389|CCDS76794" P47895 7698756 MGI:1861722 RGD:628662 ALDH1A3 600463 328691 1.2.1.5 +HGNC:407 ALDH1B1 aldehyde dehydrogenase 1 family member B1 protein-coding gene gene with protein product Approved 9p13.1 09p13.1 ALDHX ALDH5 aldehyde dehydrogenase 1 family, member B1 Aldehyde dehydrogenases 398 1992-02-13 2015-11-18 2016-10-05 219 ENSG00000137124 OTTHUMG00000019938 uc004aay.4 M63967 XM_011517802 CCDS6615 P30837 2061311 MGI:1919785 RGD:1306737 ALDH1B1 100670 1.2.1.3 +HGNC:3978 ALDH1L1 aldehyde dehydrogenase 1 family member L1 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 10-fTHF cytosolic 10-formyltetrahydrofolate dehydrogenase FTHFD "formyltetrahydrofolate dehydrogenase|aldehyde dehydrogenase 1 family, member L1" Aldehyde dehydrogenases 398 1999-07-23 2005-01-27 2015-11-18 2016-10-05 10840 ENSG00000144908 OTTHUMG00000125551 uc003eim.3 AF052732 NM_012190 "CCDS3034|CCDS58850|CCDS58851" O75891 MGI:1340024 RGD:621294 ALDH1L1 600249 1.5.1.6 +HGNC:40244 ALDH1L1-AS1 ALDH1L1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 ALDH1L1 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874204 ENSG00000250218 OTTHUMG00000162640 uc031sbq.2 NR_046602 +HGNC:42446 ALDH1L1-AS2 ALDH1L1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 ALDH1L1 antisense RNA 2 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100862662 ENSG00000246022 OTTHUMG00000162642 uc062nki.1 NR_046383 +HGNC:26777 ALDH1L2 aldehyde dehydrogenase 1 family member L2 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "FLJ38508|mtFDH" mitochondrial 10-formyltetrahydrofolate dehydrogenase aldehyde dehydrogenase 1 family, member L2 Aldehyde dehydrogenases 398 2005-01-25 2015-11-18 2015-11-18 160428 ENSG00000136010 OTTHUMG00000169823 uc001tlc.4 AK095827 XM_090294 CCDS31891 Q3SY69 20498374 MGI:2444680 RGD:1309458 ALDH1L2 613584 1.5.1.6 +HGNC:404 ALDH2 aldehyde dehydrogenase 2 family (mitochondrial) protein-coding gene gene with protein product Approved 12q24.12 12q24.12 Aldehyde dehydrogenases 398 1986-01-01 2015-09-11 217 ENSG00000111275 OTTHUMG00000169603 uc001tst.4 M26760 NM_000690 "CCDS9155|CCDS55885" P05091 "4015823|2987944" MGI:99600 RGD:69219 Human Polymorphisms of ALDH Genes|http://www.aldh.org ALDH2 100650 objectId:2595 1.2.1.3 +HGNC:405 ALDH3A1 aldehyde dehydrogenase 3 family member A1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 aldehyde dehydrogenase, dimeric NADP-preferring ALDH3 aldehyde dehydrogenase 3 family, member A1 Aldehyde dehydrogenases 398 1986-01-01 2015-11-18 2015-11-18 218 ENSG00000108602 OTTHUMG00000059469 uc002gwj.4 M74542 NM_000691 "CCDS11212|CCDS82090" P30838 "7774944|1737758" MGI:1353451 RGD:2088 Human Polymorphisms of ALDH Genes|http://www.aldh.org/ ALDH3A1 100660 1.2.1.5 +HGNC:403 ALDH3A2 aldehyde dehydrogenase 3 family member A2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 FALDH fatty aldehyde dehydrogenase "SLS|ALDH10" aldehyde dehydrogenase 3 family, member A2 Aldehyde dehydrogenases 398 1996-06-14 2015-11-18 2015-11-18 224 ENSG00000072210 OTTHUMG00000059471 uc002gwb.2 L47162 XM_017024355 "CCDS11210|CCDS32589" P51648 7894487 MGI:1353452 RGD:61866 ALDH3A2 609523 119583 1.2.1.3 +HGNC:410 ALDH3B1 aldehyde dehydrogenase 3 family member B1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "aldehyde dehydrogenase 7|aldehyde dehydrogenase 3B1" ALDH7 aldehyde dehydrogenase 3 family, member B1 Aldehyde dehydrogenases 398 1997-01-22 2015-11-18 2016-10-05 221 ENSG00000006534 OTTHUMG00000154910 uc031xti.2 U10868 NM_000694 "CCDS73335|CCDS73336|CCDS76443" P43353 "9161417|7828891" MGI:1914939 RGD:1359546 600466 1.2.1.5 +HGNC:411 ALDH3B2 aldehyde dehydrogenase 3 family member B2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "aldehyde dehydrogenase 8|acetaldehyde dehydrogenase 8" ALDH8 aldehyde dehydrogenase 3 family, member B2 Aldehyde dehydrogenases 398 1997-01-22 2015-11-18 2015-11-18 222 ENSG00000132746 OTTHUMG00000167284 uc001oms.4 U37519 NM_000695 CCDS31622 P48448 "8890755|9161417" "MGI:1920708|MGI:2147613" RGD:1584166 ALDH3B2 601917 1.2.1.5 +HGNC:406 ALDH4A1 aldehyde dehydrogenase 4 family member A1 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 P5CDh ALDH4 aldehyde dehydrogenase 4 family, member A1 Aldehyde dehydrogenases 398 1998-11-24 2015-11-18 2016-10-05 8659 ENSG00000159423 OTTHUMG00000002443 uc001bbc.4 U24266 XR_001737510 "CCDS188|CCDS53272|CCDS81273" P30038 8621661 MGI:2443883 RGD:1624206 Human Polymorphisms of ALDH Genes|http://www.aldh.org/ ALDH4A1 606811 119588 1.5.1.12 +HGNC:408 ALDH5A1 aldehyde dehydrogenase 5 family member A1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "SSADH|SSDH" succinate-semialdehyde dehydrogenase aldehyde dehydrogenase 5 family, member A1 Aldehyde dehydrogenases 398 1999-06-11 2015-11-18 2016-10-05 7915 ENSG00000112294 OTTHUMG00000014356 uc003neg.4 L34820 NM_001080 "CCDS4555|CCDS4556" P51649 "7814412|9059628" MGI:2441982 RGD:621422 "BIOMBD|http://www.biopku.org/home/biomdb.asp|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/vumc/home.php?select_db=ALDH5A1" ALDH5A1 610045 119592 objectId:2466 1.2.1.24 +HGNC:7179 ALDH6A1 aldehyde dehydrogenase 6 family member A1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 MMSDH aldehyde dehydrogenase 6 family, member A1 Aldehyde dehydrogenases 398 1994-05-12 2015-11-18 2015-11-18 4329 ENSG00000119711 OTTHUMG00000171203 uc001xpo.5 M93405 XM_017021331 "CCDS9826|CCDS61501" Q02252 1527093 MGI:1915077 RGD:621556 ALDH6A1 603178 289319 1.2.1.27 +HGNC:877 ALDH7A1 aldehyde dehydrogenase 7 family member A1 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 "EPD|PDE" "antiquitin 1|26g turgor protein homolog|alpha-aminoadipic semialdehyde dehydrogenase|alpha-AASA dehydrogenase|delta1-piperideine-6-carboxylate dehydrogenease|P6c dehydrogenase" ATQ1 aldehyde dehydrogenase 7 family, member A1 Aldehyde dehydrogenases 398 1995-12-11 2015-11-18 2016-04-20 501 ENSG00000164904 OTTHUMG00000128942 uc003ktx.5 S74728 NM_001182 "CCDS4137|CCDS56380" P49419 9417906 MGI:108186 RGD:1308614 BIOMBD|http://www.biopku.org/home/biomdb.asp ALDH7A1 107323 119596 1.2.1.31 +HGNC:878 ALDH7A1P1 aldehyde dehydrogenase 7 family member A1 pseudogene 1 pseudogene pseudogene Approved 5q13.3 05q13.3 ATQL1 "antiquitin-like 1|aldehyde dehydrogenase 7 family, member A1 pseudogene 1" 1997-05-09 2005-08-01 2015-11-18 2016-10-05 541 ENSG00000251400 OTTHUMG00000162511 AF002693 NG_001082 "9417906|16004729" PGOHUM00000235664 +HGNC:879 ALDH7A1P2 aldehyde dehydrogenase 7 family member A1 pseudogene 2 pseudogene pseudogene Approved 2q31.1 02q31.1 ATQL2 "antiquitin-like 2|aldehyde dehydrogenase 7 family, member A1 pseudogene 2" 1997-05-09 2010-09-22 2015-11-18 2015-11-18 542 ENSG00000232292 OTTHUMG00000154092 NG_023632 9417906 PGOHUM00000240425 +HGNC:880 ALDH7A1P3 aldehyde dehydrogenase 7 family member A1 pseudogene 3 pseudogene pseudogene Approved 7q36.1 07q36.1 ATQL3 "antiquitin-like 3|aldehyde dehydrogenase 7 family, member A1 pseudogene 3" 1997-05-09 2010-09-22 2015-11-18 2016-10-05 543 ENSG00000243853 OTTHUMG00000157476 AF002694 NG_001083 9417906 PGOHUM00000233076 +HGNC:881 ALDH7A1P4 aldehyde dehydrogenase 7 family member A1 pseudogene 4 pseudogene pseudogene Approved 10q21.2 10q21.2 ATQL4 "antiquitin-like 4|aldehyde dehydrogenase 7 family, member A1 pseudogene 4" 1997-05-09 2010-09-22 2015-11-18 2016-10-05 544 ENSG00000234489 OTTHUMG00000018305 AF002695 NG_001084 9417906 PGOHUM00000262847 +HGNC:15471 ALDH8A1 aldehyde dehydrogenase 8 family member A1 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 ALDH12 aldehyde dehydrogenase 8 family, member A1 Aldehyde dehydrogenases 398 2001-03-30 2015-11-18 2016-10-05 64577 ENSG00000118514 OTTHUMG00000015623 uc003qew.3 AL021939 NM_001193480 "CCDS5171|CCDS5172|CCDS55057" Q9H2A2 11007799 MGI:2653900 RGD:1590218 ALDH8A1 606467 +HGNC:412 ALDH9A1 aldehyde dehydrogenase 9 family member A1 protein-coding gene gene with protein product Approved 1q24.1 01q24.1 E3 "ALDH7|ALDH4|ALDH9" aldehyde dehydrogenase 9 family, member A1 Aldehyde dehydrogenases 398 1994-12-14 2015-11-18 2015-11-18 223 ENSG00000143149 OTTHUMG00000034677 uc001gdh.2 U34252 XM_011509294 CCDS1250 P49189 "8112751|8786138" MGI:1861622 RGD:68409 Human Polymorphisms of ALDH Genes|http://www.aldh.org ALDH9A1 602733 objectId:2467 +HGNC:28114 ALDH16A1 aldehyde dehydrogenase 16 family member A1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 MGC10204 aldehyde dehydrogenase 16 family, member A1 Aldehyde dehydrogenases 398 2005-01-25 2015-11-18 2015-11-18 126133 ENSG00000161618 OTTHUMG00000183163 uc002pnt.4 AY007096 NM_153329 "CCDS12766|CCDS46141" Q8IZ83 MGI:1916998 RGD:1566295 ALDH16A1 613358 +HGNC:9722 ALDH18A1 aldehyde dehydrogenase 18 family member A1 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 P5CS "GSAS|PYCS" "pyrroline-5-carboxylate synthetase (glutamate gamma-semialdehyde synthetase)|aldehyde dehydrogenase 18 family, member A1" Aldehyde dehydrogenases 398 1996-10-02 2004-08-12 2015-11-18 2015-11-18 5832 ENSG00000059573 OTTHUMG00000018815 uc001kkz.4 X94453 NM_002860 "CCDS7443|CCDS31257" P54886 8921385 MGI:1888908 RGD:1311431 ALDH18A1 138250 119578 +HGNC:414 ALDOA aldolase, fructose-bisphosphate A protein-coding gene gene with protein product Approved 16p11.2 16p11.2 aldolase A, fructose-bisphosphate 1986-01-01 2015-12-04 2015-12-04 226 ENSG00000149925 OTTHUMG00000132107 uc002dvx.4 X05236 NM_000034 "CCDS10668|CCDS58450" P04075 3570299 MGI:87994 RGD:2089 ALDOA 103850 119599 4.1.2.13 +HGNC:415 ALDOAP1 aldolase, fructose-bisphosphate A pseudogene 1 pseudogene pseudogene Approved 3p21.2 03p21.2 aldolase A, fructose-bisphosphate pseudogene 1 1986-01-01 2015-12-04 2016-10-04 391538 ENSG00000242849 OTTHUMG00000157814 NG_004867 PGOHUM00000299439 +HGNC:416 ALDOAP2 aldolase, fructose-bisphosphate A pseudogene 2 pseudogene pseudogene Approved 10q26.13 10q26.13 aldolase A, fructose-bisphosphate pseudogene 2 1986-01-01 2015-12-04 2015-12-04 228 ENSG00000214297 OTTHUMG00000019228 M21191 NG_005637 3674018 PGOHUM00000238648 +HGNC:417 ALDOB aldolase, fructose-bisphosphate B protein-coding gene gene with protein product Approved 9q31.1 09q31.1 aldolase B, fructose-bisphosphate 1986-01-01 2015-12-04 2016-10-05 229 ENSG00000136872 OTTHUMG00000020378 uc004bbk.3 X01098 NM_000035 CCDS6756 P05062 MGI:87995 RGD:2090 Hereditary Fructose Intolerance/Aldolase|http://www.bu.edu/aldolase/ ALDOB 612724 119601 4.1.2.13 +HGNC:418 ALDOC aldolase, fructose-bisphosphate C protein-coding gene gene with protein product Approved 17q11.2 17q11.2 aldolase C, fructose-bisphosphate 1986-01-01 2015-12-04 2015-12-04 230 ENSG00000109107 OTTHUMG00000132605 uc002hbp.4 AF054987 XM_005257949 CCDS11236 P09972 MGI:101863 RGD:2091 ALDOC 103870 4.1.2.13 +HGNC:421 ALDRL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-16 +HGNC:424 ALDRL5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:426 ALFN1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-01-13 +HGNC:18294 ALG1 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "HMT-1|HMAT1" "asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase)|asparagine-linked glycosylation 1, beta-1,4-mannosyltransferase homolog (S. cerevisiae)" Glycosyl transferases group 1 domain containing 427 2003-10-15 2013-02-22 2015-08-24 56052 ENSG00000033011 OTTHUMG00000129529 uc002cym.4 AB019038 NM_019109 "CCDS10528|CCDS81946" Q9BT22 10704531 MGI:2384774 RGD:1310700 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ ALG1 605907 119603 2.4.1.142 +HGNC:33721 ALG1L ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase like protein-coding gene gene with protein product Approved 3q21.2 03q21.2 ALG1L1 asparagine-linked glycosylation 1-like 1 asparagine-linked glycosylation 1-like Glycosyl transferases group 1 domain containing 427 2009-04-14 2016-06-10 2016-06-10 200810 ENSG00000189366 OTTHUMG00000159588 uc003eig.3 BC073816 NM_001015050 "CCDS33840|CCDS74998" Q6GMV1 ALG1L +HGNC:37258 ALG1L2 ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase like 2 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 asparagine-linked glycosylation 1-like 2 Glycosyl transferases group 1 domain containing 427 2009-09-24 2016-06-10 2016-06-10 644974 ENSG00000251287 OTTHUMG00000159782 uc011bld.2 BC127756 NM_001136152 C9J202 PGOHUM00000258160 +HGNC:44372 ALG1L3P asparagine-linked glycosylation 1-like 3, pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 2012-09-13 2012-09-13 100132066 ENSG00000251087 OTTHUMG00000160250 NG_008784 PGOHUM00000245452 +HGNC:44374 ALG1L5P asparagine-linked glycosylation 1-like 5, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 2012-09-13 2012-09-13 647415 ENSG00000226943 OTTHUMG00000158492 NG_008785 PGOHUM00000233116 +HGNC:44375 ALG1L6P asparagine-linked glycosylation 1-like 6, pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 2012-09-13 2012-09-13 339879 ENSG00000238278 OTTHUMG00000158851 NG_008769 PGOHUM00000238073 +HGNC:44376 ALG1L7P asparagine-linked glycosylation 1-like 7, pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 2012-09-13 2012-09-13 728263 ENSG00000251271 OTTHUMG00000159841 NG_008780 PGOHUM00000245813 +HGNC:44377 ALG1L8P asparagine-linked glycosylation 1-like 8, pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 2012-09-13 2012-09-13 645015 ENSG00000227620 OTTHUMG00000167242 NG_008772 PGOHUM00000242773 +HGNC:44378 ALG1L9P asparagine-linked glycosylation 1-like 9, pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 2012-09-13 2012-09-13 285407 ENSG00000254978 OTTHUMG00000167481 uc031qck.2 NR_073386 PGOHUM00000250382 +HGNC:44379 ALG1L10P asparagine-linked glycosylation 1-like 10, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 2012-09-13 2012-09-13 106479037 ENSG00000254016 OTTHUMG00000168660 NG_044399 PGOHUM00000239646 +HGNC:44380 ALG1L11P asparagine-linked glycosylation 1-like 11, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2012-09-13 2013-06-10 106480789 ENSG00000249889 OTTHUMG00000160503 NG_045702 PGOHUM00000250021 +HGNC:44381 ALG1L12P asparagine-linked glycosylation 1-like 12, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2012-09-13 2012-09-13 100421097 ENSG00000250794 OTTHUMG00000160507 NG_026086 PGOHUM00000249572 +HGNC:44382 ALG1L13P asparagine-linked glycosylation 1-like 13, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2012-09-13 2012-11-07 106479038 ENSG00000253981 OTTHUMG00000163708 NG_044407 PGOHUM00000249224 +HGNC:44383 ALG1L14P asparagine-linked glycosylation 1-like 14, pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 2012-09-13 2012-09-13 100996649 ENSG00000250268 OTTHUMG00000160157 PGOHUM00000245447 +HGNC:44384 ALG1L15P asparagine-linked glycosylation 1-like 15, pseudogene pseudogene pseudogene Approved 3q25.31 03q25.31 2012-09-13 2012-09-13 730086 ENSG00000242017 OTTHUMG00000158546 NG_008778 PGOHUM00000237831 +HGNC:23159 ALG2 ALG2, alpha-1,3/1,6-mannosyltransferase protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "CDGIi|FLJ14511|hALPG2|NET38" "asparagine-linked glycosylation 2 homolog (yeast, alpha-1,3-mannosyltransferase)|asparagine-linked glycosylation 2, alpha-1,3-mannosyltransferase homolog (S. cerevisiae)" Glycosyl transferases group 1 domain containing 427 2003-10-15 2013-02-22 2016-10-05 85365 ENSG00000119523 OTTHUMG00000020355 uc004azf.4 AK027417 NM_033087 CCDS6739 Q9H553 12684507 MGI:1914731 RGD:1309940 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ ALG2 607905 119613 "2.4.1.132|2.4.1.257" +HGNC:23056 ALG3 ALG3, alpha-1,3- mannosyltransferase protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "NOT56L|Not56|CDGS4|D16Ertd36e" "carbohydrate deficient glycoprotein syndrome type IV|dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase|dol-P-Man dependent alpha-1,3- mannosyltransferase" "asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)|asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae)" Dolichyl D-mannosyl phosphate dependent mannosyltransferases 430 2003-10-15 2013-02-26 2016-10-05 10195 ENSG00000214160 OTTHUMG00000156823 uc003fne.3 BC002839 NM_005787 "CCDS46967|CCDS46968" Q92685 1058125 MGI:1098592 RGD:1306004 Congenital Disorder of Glycosylation pages|http://www.euroglycanet.org/ ALG3 608750 119618 2.4.1.258 +HGNC:45159 ALG3P1 ALG3, alpha-1,3- mannosyltransferase pseudogene 1 pseudogene pseudogene Approved 5p15.32 05p15.32 2013-02-25 2013-02-26 2013-02-26 442131 ENSG00000251568 OTTHUMG00000161662 NG_004807 PGOHUM00000235111 +HGNC:20266 ALG5 ALG5, dolichyl-phosphate beta-glucosyltransferase protein-coding gene gene with protein product Approved 13q13.3 13q13.3 bA421P11.2 "asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)|asparagine-linked glycosylation 5, dolichyl-phosphate beta-glucosyltransferase homolog (S. cerevisiae)" Glycosyltransferase family 2 428 2003-10-15 2013-02-21 2016-10-05 29880 ENSG00000120697 OTTHUMG00000016741 uc001uvy.4 AF088028 NM_013338 "CCDS9361|CCDS45033" Q9Y673 10359825 MGI:1913498 RGD:1308900 ALG5 604565 2.4.1.117 +HGNC:23157 ALG6 ALG6, alpha-1,3-glucosyltransferase protein-coding gene gene with protein product Approved 1p31.3 01p31.3 dolichyl-P-Glc:Man(9)GlcNAc(2)-PP-dolichol alpha- 1->3-glucosyltransferase "asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3-glucosyltransferase)|asparagine-linked glycosylation 6, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)" Alpha-1,3-glucosyltransferases 447 2003-10-15 2013-03-01 2014-11-19 29929 ENSG00000088035 OTTHUMG00000009140 uc021oof.1 AF063604 NM_013339 CCDS30735 Q9Y672 "10359825|11875054" MGI:2444031 RGD:1308815 Congenital Disorder of Glycosylation pages|http://www.euroglycanet.org/ ALG6 604566 119624 2.4.1.267 +HGNC:23161 ALG8 ALG8, alpha-1,3-glucosyltransferase protein-coding gene gene with protein product Approved 11q14.1 11q14.1 MGC2840 dolichyl-P-Glc:Glc(1)Man(9)GlcNAc(2)-PP-dolichol alpha- 1->3-glucosyltransferase "asparagine-linked glycosylation 8 homolog (yeast, alpha-1,3-glucosyltransferase)|asparagine-linked glycosylation 8, alpha-1,3-glucosyltransferase homolog (S. cerevisiae)" Alpha-1,3-glucosyltransferases 447 2003-10-15 2013-03-01 2014-11-19 79053 ENSG00000159063 OTTHUMG00000166594 uc001oza.2 AJ224875 NM_024079 "CCDS8258|CCDS41692" Q9BVK2 MGI:2141959 RGD:1305468 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ ALG8 608103 119626 2.4.1.265 +HGNC:15672 ALG9 ALG9, alpha-1,2-mannosyltransferase protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "dolichyl-P-Man:Man(6)GlcNAc(2)-PP-dolichol alpha-1,2-mannosyltransferase|dolichyl-P-Man:Man(8)GlcNAc(2)-PP-dolichol alpha-1,2-mannosyltransferase|dol-P-Man dependent alpha-1,2-mannosyltransferase" DIBD1 "disrupted in bipolar affective disorder 1|asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase)|asparagine-linked glycosylation 9, alpha- 1,2-mannosyltransferase homolog (S. cerevisiae, alpha- 1,2-mannosyltransferase)|asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog (S. cerevisiae)" Dolichyl D-mannosyl phosphate dependent mannosyltransferases 430 2003-04-23 2004-08-26 2013-02-26 2016-10-05 79796 ENSG00000086848 OTTHUMG00000166819 uc031yet.2 NM_024740 "CCDS41714|CCDS53709|CCDS73379|CCDS73380" Q9H6U8 "12030331|15148656" MGI:1924753 RGD:1311272 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ ALG9 606941 119629 "2.4.1.259|2.4.1.261" +HGNC:41409 ALG9-IT1 ALG9 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 11q23.1 11q23.1 ALG9 intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100874303 ENSG00000254450 OTTHUMG00000166796 uc058hfk.1 +HGNC:23162 ALG10 ALG10, alpha-1,2-glucosyltransferase protein-coding gene gene with protein product Approved 12p11.1 12p11.1 "FLJ14751|DIE2|ALG10A" "derepression of ITR1 expression 2 homolog (S. cerevisiae)|dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2- glucosyltransferase" "asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (yeast)|asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog (S. pombe)" Alpha-1,2-glucosyltransferases 448 2003-10-15 2013-03-04 2016-10-05 84920 ENSG00000139133 OTTHUMG00000169285 uc001rlm.4 AJ312278 NM_032834 CCDS41769 Q5BKT4 MGI:2146159 RGD:708500 ALG10 603313 2.4.1.256 +HGNC:31088 ALG10B ALG10B, alpha-1,2-glucosyltransferase protein-coding gene gene with protein product Approved 12q12 12q12 KCR1 "potassium channel regulator 1|dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2- glucosyltransferase" asparagine-linked glycosylation 10, alpha-1,2-glucosyltransferase homolog B (yeast) Alpha-1,2-glucosyltransferases 448 2004-11-30 2013-03-04 2013-03-04 144245 ENSG00000175548 OTTHUMG00000169298 uc001rln.5 AY845858 NM_001013620 "CCDS31772|CCDS76548" Q5I7T1 MGI:2146159 ALG10B 2.4.1.256 +HGNC:32456 ALG11 ALG11, alpha-1,2-mannosyltransferase protein-coding gene gene with protein product Approved 13q14.3 13q14.3 KIAA0266 GDP-Man:Man(3)GlcNAc(2)-PP-dolichol alpha-1,2-mannosyltransferase "asparagine-linked glycosylation 11 homolog (S. cerevisiae, alpha-1,2-mannosyltransferase)|asparagine-linked glycosylation 11, alpha-1,2-mannosyltransferase homolog (yeast)" Glycosyl transferases group 1 domain containing 427 2006-03-24 2013-02-22 2014-11-19 440138 ENSG00000253710 OTTHUMG00000016959 uc001vga.4 AK025456 NM_001004127 CCDS31977 Q2TAA5 20080937 MGI:2142632 RGD:1564725 ALG11 613666 280090 2.4.1.131 +HGNC:19358 ALG12 ALG12, alpha-1,6-mannosyltransferase protein-coding gene gene with protein product Approved 22q13.33 22q13.33 ECM39 "dolichyl-P-Man:Man(7)GlcNAc(2)-PP-dolichol alpha-1,6-mannosyltransferase|dol-P-Man dependent alpha-1,6-mannosyltransferase" "asparagine-linked glycosylation 12 homolog (yeast, alpha-1,6-mannosyltransferase)|asparagine-linked glycosylation 12, alpha-1,6-mannosyltransferase homolog (S. cerevisiae)" Dolichyl D-mannosyl phosphate dependent mannosyltransferases 430 2003-10-15 2013-02-26 2014-11-19 79087 ENSG00000182858 OTTHUMG00000150289 uc003biy.4 AJ303120 NM_024105 CCDS14081 Q9BV10 11983712 MGI:2385025 RGD:1304826 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ ALG12 607144 119610 2.4.1.260 +HGNC:30881 ALG13 ALG13, UDP-N-acetylglucosaminyltransferase subunit protein-coding gene gene with protein product Approved Xq23 Xq23 "MDS031|YGL047W|FLJ23018|TDRD13" "tudor domain containing 13|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase" "GLT28D1|CXorf45" "glycosyltransferase 28 domain containing 1|chromosome X open reading frame 45|asparagine-linked glycosylation 13 homolog (S. cerevisiae)" "UDP-N-acetylglucosaminyltransferase subunits|OTU domain containing|Tudor domain containing" "449|669|780" 2004-09-16 2006-11-07 2013-02-21 2015-01-12 79868 ENSG00000101901 OTTHUMG00000022209 uc011msy.3 AF220051 NM_018466 "CCDS14559|CCDS55477|CCDS59173|CCDS76011|CCDS76012|CCDS76013" Q9NP73 24501762 MGI:1914824 RGD:1359416 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ALG13 ALG13 300776 327338 C85.005 2.4.1.141 +HGNC:41277 ALG13-AS1 ALG13 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq23 Xq23 ALG13 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 106478971 ENSG00000229487 OTTHUMG00000067670 uc065atf.1 +HGNC:28287 ALG14 ALG14, UDP-N-acetylglucosaminyltransferase subunit protein-coding gene gene with protein product Approved 1p21.3 01p21.3 MGC19780 "asparagine-linked glycosylation 14 homolog (yeast)|asparagine-linked glycosylation 14 homolog (S. cerevisiae)" UDP-N-acetylglucosaminyltransferase subunits 449 2005-08-09 2013-02-21 2014-11-19 199857 ENSG00000172339 OTTHUMG00000010781 uc001dra.3 NM_144988 CCDS752 Q96F25 15615718 MGI:1914039 RGD:1312003 ALG14 612866 330740 +HGNC:427 ALK anaplastic lymphoma receptor tyrosine kinase protein-coding gene gene with protein product Approved 2p23.2-p23.1 02p23.2-p23.1 CD246 anaplastic lymphoma kinase (Ki-1) "Receptor Tyrosine Kinases|CD molecules" "321|471" 1993-08-24 2008-01-23 2016-10-12 238 ENSG00000171094 OTTHUMG00000152034 uc002rmy.4 D45915 NM_004304 CCDS33172 Q9UM73 8122112 MGI:103305 RGD:628622 LRG_488|http://www.lrg-sequence.org/LRG/LRG_488 ALK 105590 160020 objectId:1839 CD246 +HGNC:17911 ALKBH1 alkB homolog 1, histone H2A dioxygenase protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "hABH|alkB|ABH" ALKBH "alkB, alkylation repair homolog (E. coli)|alkB, alkylation repair homolog 1 (E. coli)" Alkylation repair homologs 401 2002-11-27 2006-02-09 2015-06-26 2016-10-05 8846 ENSG00000100601 OTTHUMG00000171542 uc001xuc.2 X91992 NM_006020 CCDS32127 Q13686 "8600462|22961808" MGI:2384034 RGD:1308327 ALKBH1 605345 +HGNC:32487 ALKBH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "MGC90512|ABH2" alkB, alkylation repair homolog 2 (E. coli) Alkylation repair homologs 401 2006-02-09 2016-06-08 2016-06-08 121642 ENSG00000189046 OTTHUMG00000169246 uc001tny.3 AY754389 NM_001001655 "CCDS31897|CCDS55883" Q6NS38 MGI:2141032 RGD:1306377 ALKBH2 610602 +HGNC:30141 ALKBH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding gene gene with protein product Approved 11p11.2 11p11.2 DEPC-1 alkB, alkylation repair homolog 3 (E. coli) Alkylation repair homologs 401 2006-02-09 2016-06-08 2016-06-08 221120 ENSG00000166199 OTTHUMG00000166417 uc001mxs.3 AB042029 NM_139178 CCDS7906 Q96Q83 22055184 MGI:1916363 RGD:1359731 ALKBH3 610603 +HGNC:48670 ALKBH3-AS1 ALKBH3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p11.2 11p11.2 2013-06-06 2013-06-06 100507300 ENSG00000244926 OTTHUMG00000166553 NR_038907 +HGNC:21900 ALKBH4 alkB homolog 4, lysine demethylase protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FLJ20013 alkB, alkylation repair homolog 4 (E. coli) Alkylation repair homologs 401 2006-02-09 2015-12-03 2015-12-03 54784 ENSG00000160993 OTTHUMG00000157720 uc003uzl.4 BC017096 NM_017621 CCDS5723 Q9NXW9 23673617 MGI:1919291 RGD:1308608 ALKBH4 613302 +HGNC:25996 ALKBH5 alkB homolog 5, RNA demethylase protein-coding gene gene with protein product Approved 17p11.2 17p11.2 FLJ20308 OFOXD1 "oxoglutarate and iron-dependent oxygenase domain containing|alkB, alkylation repair homolog 5 (E. coli)|AlkB family member 5, RNA demethylase" Alkylation repair homologs 401 2005-12-15 2006-02-09 2015-06-26 2015-06-26 54890 ENSG00000091542 OTTHUMG00000059397 uc010cpw.4 AK000315 NM_017758 CCDS42272 Q6P6C2 "11997338|24778178" MGI:2144489 RGD:1309496 ALKBH5 613303 1.14.11.- +HGNC:28243 ALKBH6 alkB homolog 6 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 MGC15677 alkB, alkylation repair homolog 6 (E. coli) Alkylation repair homologs 401 2006-02-09 2015-06-26 2015-06-26 84964 ENSG00000239382 OTTHUMG00000048137 uc002ocv.2 BM713594 NM_032878 "CCDS12485|CCDS74342" Q3KRA9 8889548 MGI:2142037 RGD:1566318 ALKBH6 613304 +HGNC:21306 ALKBH7 alkB homolog 7 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC10974 SPATA11 "spermatogenesis associated 11|alkB, alkylation repair homolog 7 (E. coli)" Alkylation repair homologs 401 2003-12-10 2006-02-09 2015-06-26 2015-06-26 84266 ENSG00000125652 OTTHUMG00000180792 uc002meo.3 AY427650 NM_032306 CCDS12163 Q9BT30 23666923 MGI:1913650 RGD:1598126 ALKBH7 613305 +HGNC:25189 ALKBH8 alkB homolog 8, tRNA methyltransferase protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "MGC10235|TRM9|TRMT9" tRNA methyltransferase 9 homolog (S. cerevisiae) alkB, alkylation repair homolog 8 (E. coli) "Alkylation repair homologs|RNA binding motif containing" "401|725" 2006-02-09 2015-06-26 2015-06-26 91801 ENSG00000137760 OTTHUMG00000157008 uc009yxp.4 AF086489 NM_138775 "CCDS8337|CCDS73376" Q96BT7 "20123966|21285950" MGI:1914917 RGD:1304687 ALKBH8 613306 2.1.1.229 +HGNC:17377 ALLC allantoicase protein-coding gene gene with protein product Approved 2p25.3 02p25.3 ALC 2001-12-21 2014-11-18 55821 ENSG00000151360 OTTHUMG00000151485 uc010ewt.4 AF215924 XM_017004495 CCDS46223 Q8N6M5 11054555 MGI:2136971 RGD:621804 ALLC 612396 +HGNC:428 ALMS1 ALMS1, centrosome and basal body associated protein protein-coding gene gene with protein product Approved 2p13.1 02p13.1 KIAA0328 "Alstrom syndrome 1|Alstrom syndrome protein 1" 1998-10-12 2015-12-02 2016-10-12 7840 ENSG00000116127 OTTHUMG00000152812 uc032nrd.1 AB002326 NM_015120 CCDS42697 Q8TCU4 9063741 MGI:1934606 RGD:1311590 LRG_741|http://www.lrg-sequence.org/LRG/LRG_741 ALMS1 606844 119632 +HGNC:41305 ALMS1-IT1 ALMS1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2p13.1 02p13.1 ALMS1 intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 100874291 ENSG00000230002 OTTHUMG00000152785 uc032nrh.2 BC041487 NR_046762 +HGNC:29586 ALMS1P1 ALMS1, centrosome and basal body associated protein pseudogene 1 pseudogene pseudogene Approved 2p13.1 02p13.1 "ALMS1L|ALMS1P" "Alstrom syndrome 1-like|Alstrom syndrome 1 pseudogene" 2007-08-06 2015-12-02 2015-12-02 2016-10-05 200420 ENSG00000163016 OTTHUMG00000152773 BC014492 NR_003683 12477932 +HGNC:435 ALOX5 arachidonate 5-lipoxygenase protein-coding gene gene with protein product Approved 10q11.21 10q11.21 5-LOX Arachidonate lipoxygenases 407 1992-07-10 2016-10-05 240 ENSG00000012779 OTTHUMG00000018081 uc001jce.5 J03571 NM_001320861 "CCDS7212|CCDS58078" P09917 2565035 MGI:87999 RGD:2096 ALOX5 152390 objectId:1385 1.13.11.34 +HGNC:436 ALOX5AP arachidonate 5-lipoxygenase activating protein protein-coding gene gene with protein product Approved 13q12.3 13q12.3 FLAP "five-lipoxygenase activating protein|MK-886-binding protein" arachidonate 5-lipoxygenase-activating protein 1997-10-10 2016-02-01 2016-10-05 241 ENSG00000132965 OTTHUMG00000016677 uc001utf.3 AH001462 NM_001629 "CCDS9337|CCDS73558" P20292 "1673682|10036194" MGI:107505 RGD:2097 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=ALOX5AP ALOX5AP 603700 +HGNC:429 ALOX12 arachidonate 12-lipoxygenase, 12S type protein-coding gene gene with protein product Approved 17p13.1 17p13.1 12S-LOX "platelet 12-LOX|Arachidonate 12-lipoxygenase, 12S-type" arachidonate 12-lipoxygenase Arachidonate lipoxygenases 407 1991-08-07 2016-05-05 2016-05-05 239 ENSG00000108839 OTTHUMG00000102088 uc002gdx.4 M35418 XM_011523780 CCDS11084 P18054 1570320 MGI:87998 RGD:1311159 ALOX12 152391 objectId:1387 1.13.11.31 +HGNC:51342 ALOX12-AS1 ALOX12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p13.1 17p13.1 2014-10-10 2014-10-10 100506713 ENSG00000215067 OTTHUMG00000132903 AK074580 NR_040089 +HGNC:430 ALOX12B arachidonate 12-lipoxygenase, 12R type protein-coding gene gene with protein product Approved 17p13.1 17p13.1 12R-LOX Arachidonate lipoxygenases 407 1998-07-22 2016-03-24 242 ENSG00000179477 OTTHUMG00000108180 uc002gjy.1 AF038461 NM_001139 CCDS11129 O75342 9618483 MGI:1274782 RGD:1305330 ALOX12B 603741 119635 objectId:1386 1.13.11.31 +HGNC:431 ALOX12P1 arachidonate 12-lipoxygenase pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 ALOX12P 1992-11-20 2015-09-21 243 ENSG00000264958 OTTHUMG00000178853 M87004 NG_000844 1570320 PGOHUM00000294377 +HGNC:432 ALOX12P2 arachidonate 12-lipoxygenase pseudogene 2 pseudogene pseudogene Approved 17p13.1 17p13.1 1998-08-26 2014-11-18 245 ENSG00000262943 OTTHUMG00000177324 AF020774 NR_002710 9691181 ALOX12P2 PGOHUM00000237213 +HGNC:433 ALOX15 arachidonate 15-lipoxygenase protein-coding gene gene with protein product Approved 17p13.2 17p13.2 15-LOX-1 Arachidonate lipoxygenases 407 1992-11-20 2016-10-05 246 ENSG00000161905 OTTHUMG00000090746 uc010vse.3 M23892 NM_001140 CCDS11049 P16050 1570320 MGI:87997 RGD:70493 ALOX15 152392 objectId:1388 1.13.11.33 +HGNC:434 ALOX15B arachidonate 15-lipoxygenase, type B protein-coding gene gene with protein product Approved 17p13.1 17p13.1 15-LOX-2 arachidonate 15-lipoxygenase, second type Arachidonate lipoxygenases 407 1998-07-22 2006-01-16 2015-08-28 247 ENSG00000179593 OTTHUMG00000108181 uc002gju.4 U78294 NM_001039130 "CCDS11128|CCDS32558|CCDS32559" O15296 9177185 MGI:1098228 RGD:628809 ALOX15B 603697 objectId:1389 1.13.11.33 +HGNC:13742 ALOX15P1 arachidonate 15-lipoxygenase pseudogene 1 pseudogene pseudogene Approved 17p13.1 17p13.1 ALOX15P arachidonate 15-lipoxygenase pseudogene 2000-11-29 2010-09-24 2010-09-24 2014-11-18 100652883 AJ294410 NG_009476 PGOHUM00000237211 +HGNC:39027 ALOX15P2 arachidonate 15-lipoxygenase pseudogene 2 pseudogene pseudogene Approved 9q22.31 09q22.31 2010-09-24 2014-11-19 642959 ENSG00000188101 OTTHUMG00000020239 NG_028727 PGOHUM00000236709 +HGNC:13743 ALOXE3 arachidonate lipoxygenase 3 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "eLOX3|E-LOX" Arachidonate lipoxygenases 407 2000-11-29 2015-09-11 59344 ENSG00000179148 OTTHUMG00000108179 uc010cnr.4 AJ269499 XM_017024921 "CCDS11130|CCDS54084" Q9BYJ1 MGI:1345140 RGD:1306252 ALOXE3 607206 119637 objectId:1390 1.13.11.- +HGNC:44238 ALOXE3P1 arachidonate lipoxygenase 3 pseudogene 1 pseudogene pseudogene Approved 17p13.1 17p13.1 2012-07-23 2012-07-23 100420216 NG_026215 PGOHUM00000237219 +HGNC:437 ALPI alkaline phosphatase, intestinal protein-coding gene gene with protein product Approved 2q37.1 02q37.1 Alkaline phosphatases 1072 1986-01-01 2015-09-11 248 ENSG00000163295 OTTHUMG00000133258 uc002vst.4 M15694 NM_001631 CCDS2492 P09923 "3468508|3469665" "MGI:87984|MGI:108009|MGI:1924018" RGD:2099 ALPI 171740 3.1.3.1 +HGNC:20917 ALPK1 alpha kinase 1 protein-coding gene gene with protein product Approved 4q25 04q25 "Lak|FLJ22670|KIAA1527" lymphocyte alpha-kinase 2004-12-01 2015-11-11 2016-10-05 80216 ENSG00000073331 OTTHUMG00000132911 uc003iap.5 AY044164 NM_025144 "CCDS3697|CCDS58923" Q96QP1 "10021370|10819331" MGI:1918731 RGD:1304613 ALPK1 607347 objectId:1930 +HGNC:20565 ALPK2 alpha kinase 2 protein-coding gene gene with protein product Approved 18q21.31-q21.32 18q21.31-q21.32 HAK heart alpha-kinase I-set domain containing 593 2004-12-01 2015-11-11 2016-10-11 115701 ENSG00000198796 OTTHUMG00000132755 uc002lhj.5 AY044450 NM_052947 CCDS11966 Q86TB3 10021370 MGI:2449492 RGD:1564431 ALPK2 +HGNC:17574 ALPK3 alpha kinase 3 protein-coding gene gene with protein product Approved 15q25.3 15q25.3 "MAK|KIAA1330|Midori" "myocyte induction differentiation originator|muscle alpha-kinase" "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2004-12-01 2015-11-11 2016-10-05 57538 ENSG00000136383 OTTHUMG00000148667 uc002ble.3 AY044449 NM_020778 CCDS10333 Q96L96 10021370 MGI:2151224 RGD:1309860 ALPK3 objectId:1931 +HGNC:438 ALPL alkaline phosphatase, liver/bone/kidney protein-coding gene gene with protein product Approved 1p36.12 01p36.12 TNSALP HOPS Alkaline phosphatases 1072 1986-01-01 2014-11-18 249 ENSG00000162551 OTTHUMG00000002949 uc001bet.4 BC021289 NM_000478 "CCDS217|CCDS53274|CCDS53275" P05186 "3532105|3446011" MGI:87983 RGD:2100 Tissue Nonspecific Alkaline Phosphatase Gene Mutation Database|http://www.sesep.uvsq.fr/Database.html ALPL 171760 119640 3.1.3.1 +HGNC:439 ALPP alkaline phosphatase, placental protein-coding gene gene with protein product Approved 2q37.1 02q37.1 Regan isozyme alkaline phosphatase, placental (Regan isozyme) Alkaline phosphatases 1072 1986-01-01 2010-06-24 2015-09-11 250 ENSG00000163283 OTTHUMG00000133255 uc002vsq.4 M14169 NM_001632 CCDS2490 P05187 "3001717|3461452" "MGI:87984|MGI:108009|MGI:1924018" ALPP 171800 3.1.3.1 +HGNC:440 ALPPL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:441 ALPPL2 alkaline phosphatase, placental like 2 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 alkaline phosphatase, placental-like 2 Alkaline phosphatases 1072 1990-07-06 2015-11-06 2016-10-05 251 ENSG00000163286 OTTHUMG00000133257 uc002vss.5 J04948 NM_031313 CCDS2491 P10696 "MGI:108009|MGI:1924018|MGI:87984" RGD:2325055 ALPPL2 171810 +HGNC:14016 ALPPP alkaline phosphatase, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 2002-08-30 2004-11-26 260330 AF307337 11352565 +HGNC:443 ALS2 ALS2, alsin Rho guanine nucleotide exchange factor protein-coding gene gene with protein product Approved 2q33.1 02q33.1 alsin ALS2CR6 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 6|amyotrophic lateral sclerosis 2 (juvenile)" "Rho guanine nucleotide exchange factors|VPS9 domain containing" "722|928" 1992-11-19 2015-11-06 2016-10-12 57679 ENSG00000003393 OTTHUMG00000154507 uc002uyo.4 AB053305 NM_020919 "CCDS42800|CCDS46492" Q96Q42 11586298 MGI:1921268 RGD:1310372 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_654|http://www.lrg-sequence.org/LRG/LRG_654" ALS2 606352 119644 +HGNC:20605 ALS2CL ALS2 C-terminal like protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "FLJ36525|RN49018|DKFZp686I0110" VPS9 domain containing 928 2003-03-05 2014-11-19 259173 ENSG00000178038 OTTHUMG00000128673 uc003cqb.3 AK074118 NM_147129 CCDS2743 Q60I27 "15388334|8889548|17239822" MGI:2447532 RGD:1305208 ALS2CL 612402 +HGNC:14438 ALS2CR11 amyotrophic lateral sclerosis 2 chromosome region candidate 11 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 FLJ25351 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 2001-01-26 2015-11-11 2016-10-05 151254 ENSG00000155754 OTTHUMG00000132830 uc002uye.4 AB053313 NM_152525 "CCDS2349|CCDS54430|CCDS54428|CCDS54429" Q53TS8 11586298 MGI:1920713 RGD:1565450 ALS2CR11 +HGNC:14439 ALS2CR12 amyotrophic lateral sclerosis 2 chromosome region candidate 12 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 2001-01-26 2015-11-11 2015-11-11 130540 ENSG00000155749 OTTHUMG00000132824 uc010ftg.3 AB053314 NM_139163 "CCDS2346|CCDS46488" Q96Q35 MGI:1918359 RGD:1359362 ALS2CR12 +HGNC:444 ALS3 amyotrophic lateral sclerosis 3 (autosomal dominant) phenotype phenotype only Approved 18q21 18q21 1993-11-16 2011-02-10 253 11706389 606640 +HGNC:446 ALS5 amyotrophic lateral sclerosis 5 phenotype phenotype only Approved 15q15.1-q21.1 15q15.1-q21.1 1997-06-09 2007-01-19 255 9933301 +HGNC:34539 ALS7 amyotrophic lateral sclerosis 7 phenotype phenotype only Approved 20p13 20p13 2008-08-21 2011-02-10 406238 12858291 608031 +HGNC:1494 ALX1 ALX homeobox 1 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 CART1 cartilage paired-class homeoprotein 1 PRD class homeoboxes and pseudogenes 521 1999-08-26 2007-07-26 2007-07-26 2015-10-15 8092 ENSG00000180318 OTTHUMG00000169820 uc001tae.5 U31986 NM_006982 CCDS9028 Q15699 "8756334|7592751" MGI:104621 RGD:2273 ALX1 601527 8553 311114 +HGNC:449 ALX3 ALX homeobox 3 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 FND "aristaless-like homeobox 3|frontonasal dysplasia" PRD class homeoboxes and pseudogenes 521 1998-04-08 2008-11-04 2014-11-19 257 ENSG00000156150 OTTHUMG00000011650 uc001dzb.4 AF008203 NM_006492 CCDS819 O95076 "15226305|11807986|19409524" MGI:1277097 RGD:1359270 ALX3 606014 8416 189330 +HGNC:450 ALX4 ALX homeobox 4 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "FPP|PFM|KIAA1788" PFM2 "parietal foramina 2|aristaless-like homeobox 4" PRD class homeoboxes and pseudogenes 521 2000-06-15 2008-11-04 2014-11-19 60529 ENSG00000052850 OTTHUMG00000166557 uc001myb.4 AF294629 NM_021926 CCDS31468 Q9H161 "11017806|8644736" MGI:108359 RGD:1310201 ALX4 605420 8417 119647 +HGNC:19071 ALYREF Aly/REF export factor protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "ALY|BEF|ALY/REF|REF" THOC4 THO complex 4 "RNA binding motif containing|THO complex" "725|770" 2002-12-09 2011-12-12 2011-12-12 2016-04-25 10189 ENSG00000183684 OTTHUMG00000160470 uc002kbu.3 AF047002 NM_005782 CCDS32768 Q86V81 "11032328|15998806" MGI:1341044 RGD:1594679 604171 +HGNC:451 AMACR alpha-methylacyl-CoA racemase protein-coding gene gene with protein product Approved 5p13.2 05p13.2 RACE 1999-10-19 2014-11-19 23600 ENSG00000242110 OTTHUMG00000090734 uc003jig.4 AF047020 NM_014324 "CCDS3902|CCDS3903|CCDS54836" Q9UHK6 9307041 MGI:1098273 RGD:3048 AMACR 604489 159633 5.1.99.4 +HGNC:452 AMBN ameloblastin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 enamel matrix protein "ameloblastin, enamel matrix protein|ameloblastin (enamel matrix protein)" 1997-01-08 2015-11-09 2016-10-05 258 ENSG00000178522 OTTHUMG00000129913 uc003hfl.4 AF209780 NM_016519 CCDS3543 Q9NP70 9126491 MGI:104655 RGD:2101 AMBN 601259 412643 +HGNC:453 AMBP alpha-1-microglobulin/bikunin precursor protein-coding gene gene with protein product Approved 9q32 09q32 "UTI|HCP|EDC1|HI30|IATIL|ITILC" "growth-inhibiting protein 19|uristatin|complex-forming glycoprotein heterogeneous in charge|bikunin|inter-alpha-trypsin inhibitor light chain|protein HC|uronic-acid-rich protein|trypstatin" "ITI|ITIL" Lipocalins 631 1986-01-01 2016-10-05 259 ENSG00000106927 OTTHUMG00000020534 uc004bie.5 X04494 NM_001633 CCDS6800 P02760 "1708673|1385302" MGI:88002 RGD:2102 AMBP 176870 LI02-001 +HGNC:25990 AMBRA1 autophagy and beclin 1 regulator 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "FLJ20294|KIAA1736|WDR94|DCAF3" "WD repeat domain 94|DDB1 and CUL4 associated factor 3" autophagy/beclin-1 regulator 1 "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2008-02-01 2016-04-28 2016-04-28 55626 ENSG00000110497 OTTHUMG00000166500 uc001ncu.3 AB051523 NM_017749 "CCDS31475|CCDS58132|CCDS73281" Q9C0C7 "17622796|17603510|17589504" MGI:2443564 RGD:621330 AMBRA1 611359 +HGNC:456 AMCN arthrogryposis multiplex congenita, neurogenic phenotype phenotype only Approved 5q35 05q35 "AMC|AMCN1|AMC1" 1998-03-25 1998-08-10 261 9345093 208100 +HGNC:457 AMD1 adenosylmethionine decarboxylase 1 protein-coding gene gene with protein product Approved 6q21 06q21 SAMDC S-adenosylmethionine decarboxylase 1 1990-07-03 2014-11-19 262 ENSG00000123505 OTTHUMG00000015369 uc011eay.3 M88006 NM_001634 "CCDS5086|CCDS75504|CCDS75505" P17707 MGI:88004 RGD:2104 AMD1 180980 objectId:1269 4.1.1.50 +HGNC:44898 AMD1P1 adenosylmethionine decarboxylase 1 pseudogene 1 pseudogene pseudogene Approved 10p12.31 10p12.31 2012-12-12 2015-03-19 100133024 ENSG00000228339 OTTHUMG00000017782 NG_022164 PGOHUM00000290056 +HGNC:460 AMD1P2 adenosylmethionine decarboxylase 1 pseudogene 2 pseudogene pseudogene Approved Xq28 and Yq12 Xq28 and Yq12 "AMDPX|AMDPY" "AMD2|AMD|AMDP1" "S-adenosylmethionine decarboxylase pseudogene 1|adenosylmethionine decarboxylase pseudogene 1" Pseudoautosomal region 2 716 1988-08-31 2015-03-19 2015-03-19 2015-03-19 263 ENSG00000237801 OTTHUMG00000022673 U02035 NG_001073 7789170 PGOHUM00000304924 +HGNC:51608 AMD1P3 adenosylmethionine decarboxylase 1 pseudogene 3 pseudogene pseudogene Approved 5p12 05p12 2015-03-19 2015-03-19 728931 ENSG00000249286 OTTHUMG00000162224 NG_023359 PGOHUM00000300576 +HGNC:51609 AMD1P4 adenosylmethionine decarboxylase 1 pseudogene 4 pseudogene pseudogene Approved 6p24.1 06p24.1 2015-03-19 2015-03-19 100129761 ENSG00000215124 OTTHUMG00000014262 NG_022294 PGOHUM00000301255 +HGNC:28577 AMDHD1 amidohydrolase domain containing 1 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 MGC35366 2006-01-17 2016-07-14 144193 ENSG00000139344 OTTHUMG00000170353 uc001tel.3 AB075878 NM_152435 CCDS9057 Q96NU7 MGI:1919011 RGD:1308879 AMDHD1 M38.980 3.5.2.7 +HGNC:24262 AMDHD2 amidohydrolase domain containing 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 CGI-14 N-acetylglucosamine-6-phosphate deacetylase 2006-02-20 2016-07-14 51005 ENSG00000162066 OTTHUMG00000128866 uc002cqq.4 AF132948 NM_015944 "CCDS10471|CCDS53984|CCDS81936" Q9Y303 10810093 MGI:2443978 RGD:1304601 AMDHD2 3.5.1.25 +HGNC:461 AMELX amelogenin, X-linked protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 amelogenesis imperfecta 1 "AMG|AIH1" amelogenin (X chromosome, amelogenesis imperfecta 1) 1988-05-11 2010-04-20 2016-10-05 265 ENSG00000125363 OTTHUMG00000021130 uc004cut.3 NM_001142 "CCDS14144|CCDS14145|CCDS14146" Q99217 1734713 MGI:88005 RGD:2107 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AMELX AMELX 300391 119653 +HGNC:462 AMELY amelogenin, Y-linked protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 AMGL amelogenin (Y chromosome) 1988-08-31 2003-09-12 2015-08-28 266 ENSG00000099721 OTTHUMG00000035297 uc004fqz.3 M86933 NM_001143 CCDS14778 Q99218 2004775 MGI:88005 AMELY 410000 +HGNC:26837 AMER1 APC membrane recruitment protein 1 protein-coding gene gene with protein product Approved Xq11.2 Xq11.2 "RP11-403E24.2|FLJ39827|WTX" "Wilms Tumor on the X|adenomatous polyposis coli membrane recruitment 1" FAM123B family with sequence similarity 123B 2006-07-11 2012-12-03 2012-12-03 2016-10-05 139285 ENSG00000184675 OTTHUMG00000021703 uc004dvo.3 AK097146 NM_152424 CCDS14377 Q5JTC6 "21304492|21498506|20843316" MGI:1919595 RGD:1560322 AMER1 300647 173515 +HGNC:26360 AMER2 APC membrane recruitment protein 2 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 FLJ25477 FAM123A family with sequence similarity 123A 2006-07-11 2012-12-03 2012-12-03 2015-08-24 219287 ENSG00000165566 OTTHUMG00000016602 uc001uqc.5 AK055049 NM_152704 "CCDS9312|CCDS53859" Q8N7J2 20843316 MGI:1919375 RGD:1559605 614659 +HGNC:26771 AMER3 APC membrane recruitment protein 3 protein-coding gene gene with protein product Approved 2q21.1 02q21.1 FLJ38377 FAM123C family with sequence similarity 123C 2007-08-16 2012-12-03 2012-12-03 2014-11-18 205147 ENSG00000178171 OTTHUMG00000131637 uc010fmt.1 AK095696 NM_152698 CCDS2164 Q8N944 20843316 MGI:3026939 RGD:1560420 +HGNC:463 AMFR autocrine motility factor receptor protein-coding gene gene with protein product Approved 16q13 16q13 "RNF45|gp78" "autocrine motility factor receptor|autocrine motility factor receptor, E3 ubiquitin protein ligase" Ring finger proteins 58 1994-01-10 2016-03-17 2016-10-05 267 ENSG00000159461 OTTHUMG00000133239 uc002eiy.4 L35233 NM_001323511 CCDS10758 Q9UKV5 1649192 MGI:1345634 RGD:1311551 AMFR 603243 +HGNC:464 AMH anti-Mullerian hormone protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MIS Endogenous ligands 542 1986-01-01 2015-10-15 268 ENSG00000104899 OTTHUMG00000180415 uc002lvh.3 K03474 NM_000479 CCDS12085 P03971 "3754790|18784351" MGI:88006 RGD:2108 AMH 600957 119657 +HGNC:465 AMHR2 anti-Mullerian hormone receptor type 2 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "MISR2|MISRII" Muellerian inhibiting substance type II receptor anti-Mullerian hormone receptor type II Type 2 receptor serine/threonine kinases 346 1997-07-22 2016-04-27 2016-04-27 269 ENSG00000135409 OTTHUMG00000170048 uc001scx.2 AF172932 NM_020547 "CCDS8858|CCDS53798|CCDS55829" Q16671 7493017 MGI:105062 RGD:70964 AMHR2 600956 119660 objectId:1793 +HGNC:20824 AMIGO1 adhesion molecule with Ig like domain 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "AMIGO|KIAA1163" amphoterin-induced gene and open reading frame V-set domain containing 590 2005-06-23 2016-07-04 2016-07-04 57463 ENSG00000181754 OTTHUMG00000011653 uc001dxx.5 NM_020703 CCDS30795 Q86WK6 12629050 MGI:2653612 RGD:1303079 AMIGO1 615689 +HGNC:24073 AMIGO2 adhesion molecule with Ig like domain 2 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "ALI1|DEGA" amphoterin-induced gene and open reading frame 2 Immunoglobulin like domain containing 594 2005-06-23 2016-07-04 2016-07-04 347902 ENSG00000139211 OTTHUMG00000169616 uc001rpk.4 NM_181847 CCDS8751 Q86SJ2 "12629050|12843293|15107827" MGI:2145995 RGD:727911 AMIGO2 615690 +HGNC:24075 AMIGO3 adhesion molecule with Ig like domain 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 amphoterin-induced gene and open reading frame 3 Immunoglobulin like domain containing 594 2005-06-23 2016-07-04 2016-10-05 386724 ENSG00000176020 OTTHUMG00000158152 uc003cxj.4 NM_198722 CCDS33759 Q86WK7 "12629050|12975309" MGI:2444854 RGD:631413 AMIGO3 615691 +HGNC:466 AMLCR2 acute myeloid leukemia chromosome region 2 other region Approved 16q22 16q22 1999-12-15 2010-04-15 9163 9382098 +HGNC:467 AMMECR1 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding gene gene with protein product Approved Xq23 Xq23 1998-06-22 2008-09-12 2016-10-05 9949 ENSG00000101935 OTTHUMG00000022197 uc004eoo.4 AJ007014 NM_001171689 "CCDS14551|CCDS35368|CCDS55476" Q9Y4X0 "10049589|9480748|24646681" MGI:1860206 RGD:1561004 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AMMECR1 AMMECR1 300195 119662 +HGNC:41306 AMMECR1-IT1 AMMECR1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved Xq23 Xq23 AMMECR1 intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 100874352 ENSG00000224142 OTTHUMG00000022194 uc065ars.1 +HGNC:28658 AMMECR1L AMMECR1 like protein-coding gene gene with protein product Approved 2q14.3 02q14.3 MGC4268 "AMME chromosomal region gene 1-like|AMMECR1-like" 2007-01-26 2015-11-06 2016-10-05 83607 ENSG00000144233 OTTHUMG00000131535 uc002tpm.5 NM_031445 CCDS2152 Q6DCA0 MGI:2442711 RGD:1307915 AMMECR1L +HGNC:39809 AMMECR1LP1 AMMECR1 like pseudogene 1 pseudogene pseudogene Approved 13q32.1 13q32.1 "AMME chromosomal region gene 1-like pseudogene 1|AMMECR1-like pseudogene 1" 2011-03-29 2015-11-11 2015-11-11 100420921 ENSG00000233273 OTTHUMG00000017231 NG_024945 PGOHUM00000248667 +HGNC:14604 AMN amnion associated transmembrane protein protein-coding gene gene with protein product Approved 14q32.32 14q32.32 amnionless amnionless homolog (mouse) 2002-12-03 2012-12-07 2016-10-12 81693 ENSG00000166126 OTTHUMG00000171897 uc001ymg.5 AF328788 XM_011537202 CCDS9977 Q9BXJ7 11279523 MGI:1934943 RGD:1308634 LRG_642|http://www.lrg-sequence.org/LRG/LRG_642 AMN 605799 138568 +HGNC:27281 AMN1 antagonist of mitotic exit network 1 homolog protein-coding gene gene with protein product Approved 12p11.21 12p11.21 antagonist of mitotic exit network 1 homolog (S. cerevisiae) 2006-11-06 2015-07-02 2015-09-11 196394 ENSG00000151743 OTTHUMG00000169192 uc001rkq.4 NM_001113402 "CCDS44858|CCDS61089" Q8IY45 MGI:2442933 RGD:1308119 AMN1 +HGNC:17810 AMOT angiomotin protein-coding gene gene with protein product Approved Xq23 Xq23 KIAA1071 2002-01-24 2014-11-19 154796 ENSG00000126016 OTTHUMG00000022216 uc004eps.4 AB028994 NM_133265 "CCDS14563|CCDS48154" Q4VCS5 "11257124|16043488|12406577" MGI:108440 RGD:1564027 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AMOT AMOT 300410 +HGNC:17811 AMOTL1 angiomotin like 1 protein-coding gene gene with protein product Approved 11q21 11q21 JEAP junction-enriched and associated protein 2002-01-24 2015-10-15 154810 ENSG00000166025 OTTHUMG00000167828 uc001pfb.4 AF453742 NM_130847 "CCDS44712|CCDS73368" Q8IY63 11733531 MGI:1922973 RGD:1305268 AMOTL1 614657 +HGNC:17812 AMOTL2 angiomotin like 2 protein-coding gene gene with protein product Approved 3q22.2 03q22.2 LCCP "Leman coiled-coil protein|angiomotin-like protein 2" 2002-01-24 2016-10-05 51421 ENSG00000114019 OTTHUMG00000159777 uc003eqg.3 AF175966 NM_016201 "CCDS33860|CCDS63783|CCDS63784" Q9Y2J4 MGI:1929286 RGD:70977 AMOTL2 614658 +HGNC:468 AMPD1 adenosine monophosphate deaminase 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "MAD|MADA" "AMPD isoform M|skeletal muscle AMPD" adenosine monophosphate deaminase 1 (isoform M) Adenosine deaminase family 1302 1989-05-19 2010-02-10 2016-10-05 270 ENSG00000116748 OTTHUMG00000011892 uc001efe.3 M60092 NM_001172626 "CCDS53349|CCDS876" P23109 1400401 MGI:88015 RGD:2109 AMPD1 102770 121344 3.5.4.6 +HGNC:469 AMPD2 adenosine monophosphate deaminase 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 SPG63 AMPD isoform L adenosine monophosphate deaminase 2 (isoform L) Adenosine deaminase family 1302 1990-03-06 2010-02-10 2015-09-11 271 ENSG00000116337 OTTHUMG00000011649 uc001dyc.3 S47833 XR_001737116 "CCDS804|CCDS805|CCDS30796|CCDS58016|CCDS76186" Q01433 "1400401|24482476" MGI:88016 RGD:2110 AMPD2 102771 376557 3.5.4.6 +HGNC:470 AMPD3 adenosine monophosphate deaminase 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 erythrocyte-specific AMP deaminase adenosine monophosphate deaminase (isoform E) Adenosine deaminase family 1302 1993-02-17 2010-02-10 2016-10-04 272 ENSG00000133805 OTTHUMG00000165682 uc001mio.2 M84722 NM_000480 "CCDS7802|CCDS41617|CCDS44537|CCDS53601" Q01432 1400401 MGI:1096344 RGD:2111 AMPD3 102772 121350 3.5.4.6 +HGNC:471 AMPH amphiphysin protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "amphiphysin (Stiff-Mann syndrome with breast cancer 128kD autoantigen)|amphiphysin (Stiff-Man syndrome with breast cancer 128kDa autoantigen)" N-BAR domain containing 1289 1994-12-12 2007-06-19 2016-10-05 273 ENSG00000078053 OTTHUMG00000023725 uc003tgu.4 NM_001635 "CCDS5456|CCDS47574" P49418 8245793 MGI:103574 RGD:620274 AMPH 600418 +HGNC:473 AMT aminomethyltransferase protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "GCST|NKH" glycine cleavage system protein T aminomethyltransferase (glycine cleavage system protein T) 1992-04-08 2006-05-22 2016-10-12 275 ENSG00000145020 OTTHUMG00000156847 uc003cww.4 D13811 NM_000481 "CCDS2797|CCDS54583|CCDS54584|CCDS54585" P48728 "1993704|8188235" MGI:3646700 RGD:1359408 LRG_537|http://www.lrg-sequence.org/LRG/LRG_537 AMT 238310 121352 2.1.2.10 +HGNC:33188 AMTN amelotin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "UNQ689|RSTI689" 2006-12-06 2014-11-18 401138 ENSG00000187689 OTTHUMG00000129906 uc003hfk.3 AY358528 NM_212557 "CCDS3542|CCDS68716" Q6UX39 16304441 MGI:1918671 RGD:1592356 AMTN 610912 +HGNC:474 AMY1A amylase, alpha 1A (salivary) protein-coding gene gene with protein product Approved 1p21.1 01p21.1 AMY1 amylase, alpha 1A; salivary 2001-06-22 2007-05-03 2016-10-05 276 ENSG00000237763 OTTHUMG00000011020 uc001duv.4 NM_001008221 CCDS30782 P04745 "MGI:104548|MGI:3711220|MGI:3711258|MGI:3714985|MGI:88019|MGI:88020" AMY1A 104700 3.2.1.1 +HGNC:475 AMY1B amylase, alpha 1B (salivary) protein-coding gene gene with protein product Approved 1p21.1 01p21.1 AMY1 amylase, alpha 1B; salivary 2001-06-22 2007-05-03 2016-10-05 277 ENSG00000174876 OTTHUMG00000011021 uc001dux.2 NM_001008218 CCDS30783 P04745 "MGI:104548|MGI:3711220|MGI:3711258|MGI:3714985|MGI:88019|MGI:88020" AMY1B 104701 3.2.1.1 +HGNC:476 AMY1C amylase, alpha 1C (salivary) protein-coding gene gene with protein product Approved 1p21.1 01p21.1 AMY1 amylase, alpha 1C; salivary 2001-06-22 2007-05-03 2016-10-05 278 ENSG00000187733 OTTHUMG00000011045 uc057itq.1 NM_001008219 CCDS30784 P04745 "MGI:104548|MGI:3711220|MGI:3711258|MGI:3714985|MGI:88019|MGI:88020" AMY1C 104702 3.2.1.1 +HGNC:477 AMY2A amylase, alpha 2A (pancreatic) protein-coding gene gene with protein product Approved 1p21.1 01p21.1 AMY2 amylase, alpha 2A; pancreatic 2001-06-22 2007-05-03 2015-09-29 279 ENSG00000243480 OTTHUMG00000011023 uc057itg.1 BC007060 NM_000699 CCDS783 P04746 3260028 "MGI:104548|MGI:3711220|MGI:3711258|MGI:3714985|MGI:88019|MGI:88020" AMY2A 104650 objectId:2596 3.2.1.1 +HGNC:478 AMY2B amylase, alpha 2B (pancreatic) protein-coding gene gene with protein product Approved 1p21.1 01p21.1 AMY2 amylase, alpha 2B; pancreatic 1988-08-19 2006-04-27 2016-10-05 280 ENSG00000240038 OTTHUMG00000011024 uc001duq.5 M24895 NM_020978 CCDS782 P19961 8268204 "MGI:104548|MGI:3711220|MGI:3711258|MGI:3714985|MGI:88019|MGI:88020" RGD:2113 AMY2B 104660 3.2.1.1 +HGNC:479 AMYP1 amylase, alpha pseudogene 1 pseudogene pseudogene Approved 1p21.1 01p21.1 AMY2P 2001-06-22 2016-10-05 281 ENSG00000227408 OTTHUMG00000011044 NG_004750 PGOHUM00000244824 +HGNC:22231 AMZ1 archaelysin family metallopeptidase 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 KIAA1950 archaemetzincin-1 2008-01-17 2014-11-19 155185 ENSG00000174945 OTTHUMG00000152111 uc003smr.3 AB075830 NM_133463 "CCDS34589|CCDS64582" Q400G9 15972818 MGI:2442258 RGD:1311314 AMZ1 615168 M54.003 +HGNC:28041 AMZ2 archaelysin family metallopeptidase 2 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 archaemetzincin-2 2008-01-17 2014-11-19 51321 ENSG00000196704 OTTHUMG00000179802 uc002jgv.2 CR609550 NM_016627 "CCDS11674|CCDS32714" Q86W34 15972818 MGI:104837 RGD:1304846 AMZ2 615169 M54.002 +HGNC:26491 AMZ2P1 archaelysin family metallopeptidase 2 pseudogene 1 pseudogene pseudogene Approved 17q24.1 17q24.1 FLJ32065 2010-04-08 2010-04-08 2014-11-19 201283 ENSG00000214174 OTTHUMG00000132075 AK056627 NM_153032 PGOHUM00000262965 +HGNC:38072 AMZ2P2 archaelysin family metallopeptidase 2 pseudogene 2 pseudogene pseudogene Approved 6q25.3 06q25.3 2010-04-08 2014-11-19 100421018 ENSG00000219249 OTTHUMG00000015914 NG_022335 PGOHUM00000243433 +HGNC:480 AN1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:19988 ANAPC1 anaphase promoting complex subunit 1 protein-coding gene gene with protein product Approved 2q13 02q13 "MCPR|TSG24|APC1" Anaphase promoting complex 402 2004-01-13 2016-10-05 64682 ENSG00000153107 OTTHUMG00000131277 uc002thi.4 AJ278357 NM_022662 CCDS2093 Q9H1A4 11179667 MGI:103097 RGD:1306629 ANAPC1 608473 +HGNC:44150 ANAPC1P1 anaphase promoting complex subunit 1 pseudogene 1 pseudogene pseudogene Approved 2p11.2 02p11.2 2012-06-30 2012-07-04 100286979 ENSG00000233673 OTTHUMG00000153325 NR_037931 +HGNC:19989 ANAPC2 anaphase promoting complex subunit 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "APC2|KIAA1406" Anaphase promoting complex 402 2004-01-06 2015-08-24 29882 ENSG00000176248 OTTHUMG00000020983 uc004clr.2 AB037827 NM_013366 CCDS7033 Q9UJX6 11739784 MGI:2139135 RGD:1305546 ANAPC2 606946 +HGNC:19990 ANAPC4 anaphase promoting complex subunit 4 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 APC4 Anaphase promoting complex 402 2004-01-13 2016-10-05 29945 ENSG00000053900 OTTHUMG00000097753 uc003gro.4 AF191338 NM_013367 "CCDS3434|CCDS68684" Q9UJX5 6180011 MGI:1098673 RGD:1306572 ANAPC4 606947 +HGNC:15713 ANAPC5 anaphase promoting complex subunit 5 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 APC5 Anaphase promoting complex 402 2001-06-01 2014-08-12 51433 ENSG00000089053 OTTHUMG00000169157 uc001uag.4 AF191339 XM_005253900 "CCDS9220|CCDS45000|CCDS81749" Q9UJX4 9469815 MGI:1929722 RGD:1306125 ANAPC5 606948 +HGNC:17380 ANAPC7 anaphase promoting complex subunit 7 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 APC7 "Anaphase promoting complex |Tetratricopeptide repeat domain containing" "402|769" 2004-01-13 2016-10-05 51434 ENSG00000196510 OTTHUMG00000157009 uc001tqo.2 AF191340 NM_016238 "CCDS9145|CCDS44971" Q9UJX3 MGI:1929711 RGD:1311927 ANAPC7 606949 +HGNC:24077 ANAPC10 anaphase promoting complex subunit 10 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "APC10|DOC1|DKFZP564L0562" Anaphase promoting complex 402 2004-05-21 2016-10-05 10393 ENSG00000164162 OTTHUMG00000161477 uc031shp.1 AF132794 NM_014885 CCDS43273 Q9UM13 "10318877|11230166" MGI:1916249 RGD:1308936 ANAPC10 613745 +HGNC:33976 ANAPC10P1 anaphase promoting complex subunit 10 pseudogene 1 pseudogene pseudogene Approved 1p32.3 01p32.3 ANAPC10P anaphase promoting complex subunit 10 pseudogene 2008-01-31 2010-03-24 2010-03-24 2014-11-18 729198 ENSG00000213735 OTTHUMG00000008062 NG_007660 PGOHUM00000244720 +HGNC:14452 ANAPC11 anaphase promoting complex subunit 11 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "HSPC214|APC11|Apc11p|MGC882" anaphase promoting complex subunit 11 (yeast APC11 homolog) Anaphase promoting complex 402 2001-03-08 2008-10-30 2011-06-15 51529 ENSG00000141552 OTTHUMG00000177982 uc032fte.2 AF247565 NM_016476 "CCDS11789|CCDS32769|CCDS74180" Q9NYG5 10922056 MGI:1913406 RGD:1561880 ANAPC11 614534 +HGNC:24540 ANAPC13 anaphase promoting complex subunit 13 protein-coding gene gene with protein product Approved 3q22.2 03q22.2 "SWM1|APC13|DKFZP566D193" Anaphase promoting complex 402 2004-05-24 2016-10-04 25847 ENSG00000129055 OTTHUMG00000159803 uc062obl.1 AF086169 NM_015391 CCDS3085 Q9BS18 15060174 MGI:1916260 RGD:1583270 ANAPC13 614484 +HGNC:24531 ANAPC15 anaphase promoting complex subunit 15 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "HSPC020|DKFZP564M082|APC15" C11orf51 chromosome 11 open reading frame 51 Anaphase promoting complex 402 2006-02-06 2012-05-31 2012-05-31 2015-09-11 25906 ENSG00000110200 OTTHUMG00000167865 uc001orw.4 AL080071 NM_014042 "CCDS8210|CCDS60880|CCDS81593" P60006 21926987 MGI:1922680 RGD:1311634 614717 +HGNC:26976 ANAPC16 anaphase promoting complex subunit 16 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "bA570G20.3|FLJ33728|APC16|CENP-27" centromere protein 27 C10orf104 chromosome 10 open reading frame 104 Anaphase promoting complex 402 2004-04-16 2010-04-06 2010-04-06 2016-10-05 119504 ENSG00000166295 OTTHUMG00000018433 uc001jsw.4 BC009530 NM_173473 "CCDS7314|CCDS73147" Q96DE5 "14702039|20360068" MGI:1289325 RGD:2321124 ANAPC16 613427 +HGNC:482 ANCR Angelman syndrome chromosome region other region Approved 15q11-q12 15q11-q12 1989-05-01 2006-04-27 282 +HGNC:483 ANG angiogenin protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "RNASE5|RAA1" ribonuclease A family member 5 angiogenin, ribonuclease, RNase A family, 5 Ribonuclease A family 723 1989-05-23 2016-05-03 2016-10-12 283 ENSG00000214274 OTTHUMG00000029576 uc001vxw.4 NM_001097577 CCDS9554 P03950 1978563 MGI:88022 RGD:1594539 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_653|http://www.lrg-sequence.org/LRG/LRG_653" ANG 105850 159700 3.1.27.- +HGNC:19961 ANGEL1 angel homolog 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 Ccr4e KIAA0759 angel homolog 1 (Drosophila) 2003-11-21 2005-08-04 2016-06-29 2016-06-29 23357 ENSG00000013523 OTTHUMG00000171494 uc001xsv.4 AF111169 NM_015305 CCDS9852 Q9UNK9 11943475 MGI:1915987 RGD:1306238 ANGEL1 +HGNC:30534 ANGEL2 angel homolog 2 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "KIAA0759L|FLJ12793|Ccr4d" angel homolog 2 (Drosophila) 2005-08-04 2016-06-29 2016-06-29 90806 ENSG00000174606 OTTHUMG00000036927 uc001hjz.3 AL079275 NM_144567 "CCDS1512|CCDS73027" Q5VTE6 11943475 MGI:1196310 RGD:1305056 ANGEL2 +HGNC:484 ANGPT1 angiopoietin 1 protein-coding gene gene with protein product Approved 8q23.1 08q23.1 "KIAA0003|Ang1" Fibrinogen C domain containing 554 1997-04-10 2015-08-28 284 ENSG00000154188 OTTHUMG00000164812 uc003ymn.4 D13628 "NM_001146|NM_139290" "CCDS6306|CCDS56551|CCDS83313" Q15389 9545648 MGI:108448 RGD:628896 ANGPT1 601667 +HGNC:485 ANGPT2 angiopoietin 2 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 Ang2 Fibrinogen C domain containing 554 1997-07-22 2016-10-05 285 ENSG00000091879 OTTHUMG00000090365 uc003wqj.6 AF004327 NM_001147 "CCDS5958|CCDS47761|CCDS47762" O15123 9545648 MGI:1202890 RGD:621861 ANGPT2 601922 +HGNC:487 ANGPT4 angiopoietin 4 protein-coding gene gene with protein product Approved 20p13 20p13 Fibrinogen C domain containing 554 1999-01-28 2014-11-19 51378 ENSG00000101280 OTTHUMG00000031652 uc002wei.4 AF074332 NM_015985 CCDS13009 Q9Y264 "10051567|10218486" MGI:1336887 RGD:1307539 ANGPT4 603705 +HGNC:489 ANGPTL1 angiopoietin like 1 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "ANG3|AngY|ARP1" angioarrestin ANGPT3 angiopoietin-like 1 "Fibrinogen C domain containing|Angiopoietin like" "554|905" 2000-02-07 2015-11-11 2015-11-11 9068 ENSG00000116194 OTTHUMG00000035075 uc001gma.4 AF107253 NM_004673 CCDS1327 O95841 "10025962|9286704" MGI:1919963 RGD:1598128 ANGPTL1 603874 +HGNC:490 ANGPTL2 angiopoietin like 2 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "ARP2|HARP" angiopoietin-like 2 "Fibrinogen C domain containing|Angiopoietin like" "554|905" 2000-02-07 2015-11-11 2016-10-05 23452 ENSG00000136859 OTTHUMG00000020695 uc004bqr.2 AF125175 NM_012098 CCDS6868 Q9UKU9 10473614 MGI:1347002 RGD:620004 ANGPTL2 605001 +HGNC:491 ANGPTL3 angiopoietin like 3 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 angiopoietin 5 ANGPT5 angiopoietin-like 3 "Fibrinogen C domain containing|Angiopoietin like" "554|905" 2000-02-07 2015-11-11 2015-11-11 27329 ENSG00000132855 OTTHUMG00000009146 uc001das.3 AF152562 NM_014495 CCDS622 Q9Y5C1 10644446 MGI:1353627 RGD:1564505 ANGPTL3 604774 247151 +HGNC:16039 ANGPTL4 angiopoietin like 4 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "pp1158|PGAR|ARP4|HFARP|FIAF|NL2" "fasting-induced adipose factor|hepatic angiopoietin-related protein|PPARG angiopoietin related protein|hepatic fibrinogen/angiopoietin-related protein|peroxisome proliferator-activated receptor (PPAR) gamma induced angiopoietin-related protein|angiopoietin-related protein 4" angiopoietin-like 4 "Fibrinogen C domain containing|Angiopoietin like" "554|905" 2001-07-18 2015-11-11 2016-10-04 51129 ENSG00000167772 OTTHUMG00000182273 uc002mjq.3 AF202636 NM_139314 "CCDS12200|CCDS42493" Q9BY76 "10698685|10866690|23960078" MGI:1888999 RGD:735058 ANGPTL4 605910 +HGNC:19705 ANGPTL5 angiopoietin like 5 protein-coding gene gene with protein product Approved 11q22.1 11q22.1 angiopoietin-like 5 "Fibrinogen C domain containing|Angiopoietin like" "554|905" 2002-11-13 2015-11-11 2016-10-04 253935 ENSG00000187151 OTTHUMG00000167318 uc001pgl.3 BC049170 NM_178127 CCDS8312 Q86XS5 12624729 ANGPTL5 607666 +HGNC:23140 ANGPTL6 angiopoietin like 6 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "ARP5|AGF" angiopoietin-related protein 5 angiopoietin-like 6 "Fibrinogen C domain containing|Angiopoietin like" "554|905" 2003-09-24 2015-11-11 2015-11-11 83854 ENSG00000130812 OTTHUMG00000180395 uc002mmy.2 AB054064 NM_031917 CCDS12224 Q8NI99 12871997 MGI:1917976 RGD:1311141 ANGPTL6 609336 +HGNC:24078 ANGPTL7 angiopoietin like 7 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "CDT6|AngX" angiopoietin-like 7 "Fibrinogen C domain containing|Angiopoietin like" "554|905" 2005-01-07 2015-11-11 2016-10-05 10218 ENSG00000171819 OTTHUMG00000002002 uc001ase.5 Y16132 NM_021146 CCDS128 O43827 "9727400|11682471" MGI:3605801 RGD:7553363 ANGPTL7 +HGNC:24933 ANGPTL8 angiopoietin like 8 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "TD26|RIFL" "lipasin|betatrophin" C19orf80 "chromosome 19 open reading frame 80|angiopoietin-like 8" Angiopoietin like 905 2011-08-04 2015-10-23 2015-11-11 2015-11-11 55908 ENSG00000130173 uc021upf.2 NM_018687 CCDS54220 Q6UXH0 "22809513|23150577|24262987" MGI:3643534 RGD:2320121 616223 +HGNC:40024 ANHX anomalous homeobox protein-coding gene gene with protein product Approved 12q24.33 12q24.33 2012-05-18 2012-05-18 647589 ENSG00000227059 OTTHUMG00000167949 uc058vpf.1 XM_006719743 CCDS53855 E9PGG2 ANHX +HGNC:17627 ANIB1 aneurysm, intracranial berry 1 phenotype phenotype only Approved 7q11.2 07q11.2 2005-03-14 2011-02-10 116833 11536080 105800 +HGNC:31941 ANIB2 aneurysm, intracranial berry 2 phenotype phenotype only Approved 19q13 19q13 2005-03-14 2011-02-10 449013 14872410 608542 +HGNC:31942 ANIB3 aneurysm, intracranial berry 3 phenotype phenotype only Approved 1p36.13-p34.3 01p36.13-p34.3 2005-03-14 2011-02-10 497657 15540160 609122 +HGNC:31943 ANIB4 aneurysm, intracranial berry 4 phenotype phenotype only Approved 5p15.2-p14.3 05p15.2-p14.3 2006-06-19 2011-02-10 724058 16740915 610213 +HGNC:492 ANK1 ankyrin 1 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 SPH1 ANK ankyrin 1, erythrocytic Ankyrin repeat domain containing 403 1989-06-06 2015-11-20 2015-11-20 286 ENSG00000029534 OTTHUMG00000150281 uc003xom.4 M28880 NM_020475 "CCDS6119|CCDS6121|CCDS6122|CCDS47849|CCDS55227|CCDS6120" P16157 1689849 MGI:88024 RGD:1309620 ANK1 612641 121356 +HGNC:493 ANK2 ankyrin 2 protein-coding gene gene with protein product Approved 4q25-q26 04q25-q26 LQT4 "long (electrocardiographic) QT syndrome 4|ankyrin 2, neuronal" Ankyrin repeat domain containing 403 1991-06-04 2016-08-11 2016-10-12 287 ENSG00000145362 OTTHUMG00000132912 uc062zcy.1 M37123 NM_001148 "CCDS3702|CCDS43261|CCDS54796" Q01484 "7485162|12571597" MGI:88025 RGD:620156 "Gene Connection for the Heart|http://www.fsm.it/cardmoc/|ANK2 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=ANK2|LRG_327|http://www.lrg-sequence.org/LRG/LRG_327" ANK2 106410 121360 +HGNC:494 ANK3 ankyrin 3 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "ankyrin-3, node of Ranvier|ankyrin-G" ankyrin 3, node of Ranvier (ankyrin G) Ankyrin repeat domain containing 403 1994-11-22 2016-08-11 2016-10-05 288 ENSG00000151150 OTTHUMG00000018288 uc001jky.4 U13616 NM_020987 "CCDS7258|CCDS7259|CCDS55711|CCDS55712" Q12955 7665168 MGI:88026 RGD:620157 ANK3 600465 358448 +HGNC:26350 ANKAR ankyrin and armadillo repeat containing protein-coding gene gene with protein product Approved 2q32.2 02q32.2 FLJ25415 "Ankyrin repeat domain containing|Armadillo repeat containing" "403|409" 2006-07-12 2016-04-25 150709 ENSG00000151687 OTTHUMG00000154398 uc002uqw.3 AJ549812 NM_144708 CCDS33351 Q7Z5J8 15110750 MGI:2442559 RGD:1561071 ANKAR 609803 +HGNC:28002 ANKDD1A ankyrin repeat and death domain containing 1A protein-coding gene gene with protein product Approved 15q22.31 15q22.31 FLJ25870 Ankyrin repeat domain containing 403 2006-02-16 2006-02-16 2015-09-11 348094 ENSG00000166839 OTTHUMG00000133051 uc032chd.2 NM_182703 CCDS10197 Q495B1 12477932 MGI:2686319 RGD:1586052 ANKDD1A +HGNC:32525 ANKDD1B ankyrin repeat and death domain containing 1B protein-coding gene gene with protein product Approved 5q13.3 05q13.3 Ankyrin repeat domain containing 403 2006-02-16 2006-02-16 2015-09-10 728780 ENSG00000189045 OTTHUMG00000162490 uc031ski.2 XM_373090 CCDS64180 A6NHY2 MGI:2444730 RGD:2325067 +HGNC:15803 ANKEF1 ankyrin repeat and EF-hand domain containing 1 protein-coding gene gene with protein product Approved 20p12.2 20p12.2 "FLJ21669|dJ839B4.6" ANKRD5 ankyrin repeat domain 5 "Ankyrin repeat domain containing|EF-hand domain containing" "403|863" 2001-09-17 2013-01-11 2013-01-11 2014-11-19 63926 ENSG00000132623 OTTHUMG00000031860 uc002wnp.4 AK025322 NM_022096 CCDS13108 Q9NU02 17142250 MGI:2441685 RGD:1304809 +HGNC:26766 ANKFN1 ankyrin repeat and fibronectin type III domain containing 1 protein-coding gene gene with protein product Approved 17q22 17q22 FLJ38335 "Ankyrin repeat domain containing|Fibronectin type III domain containing" "403|555" 2005-11-15 2015-12-17 2016-10-05 162282 ENSG00000153930 OTTHUMG00000155010 uc002iun.1 AK095654 NM_153228 CCDS32686 Q8N957 MGI:2686021 RGD:1559713 ANKFN1 +HGNC:20763 ANKFY1 ankyrin repeat and FYVE domain containing 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "ANKHZN|KIAA1255|ZFYVE14|BTBD23|RANK-5" rabankyrin-5 "Zinc fingers FYVE-type|Ankyrin repeat domain containing|BTB domain containing" "81|403|861" 2003-04-29 2016-10-05 51479 ENSG00000185722 OTTHUMG00000177727 uc059zsj.1 AB033081 NM_016376 "CCDS42236|CCDS58502|CCDS82038" Q9P2R3 "10940552|17273843" MGI:1337008 RGD:1309598 ANKFY1 607927 +HGNC:15492 ANKH ANKH inorganic pyrophosphate transport regulator protein-coding gene gene with protein product Approved 5p15.2 05p15.2 "HANK|ANK|CPPDD" "CCAL2|CMDJ" "ankylosis, progressive (mouse) homolog|craniometaphyseal dysplasia, Jackson type (dominant)|ankylosis, progressive homolog (mouse)" 2001-04-05 2013-06-19 2014-11-19 56172 ENSG00000154122 OTTHUMG00000090539 uc003jfm.5 AF274753 NM_054027 CCDS3885 Q9HCJ1 "10894769|12297989|11326338" MGI:3045421 RGD:619925 ANKH 605145 121363 +HGNC:24714 ANKHD1 ankyrin repeat and KH domain containing 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "MASK|FLJ20288|FLJ11979|FLJ10042|FLJ14127|KIAA1085|MASK1" Ankyrin repeat domain containing 403 2004-04-16 2015-03-24 54882 ENSG00000131503 OTTHUMG00000161610 uc003lfr.3 AF521882 NM_017747 "CCDS4225|CCDS43371|CCDS43372|CCDS75319" Q8IWZ3 "10470851|11230166|16098192" MGI:1921733 RGD:4892133 ANKHD1 610500 +HGNC:33530 ANKHD1-EIF4EBP3 ANKHD1-EIF4EBP3 readthrough other readthrough Approved 5q31.3 05q31.3 MASK-BP3 2007-07-31 2014-11-19 404734 ENSG00000254996 OTTHUMG00000166212 uc003lfs.3 AF521883 NM_020690 CCDS4224 "16297570|14557257" MGI:1921733 ANKHD1-EIF4EBP3 +HGNC:22215 ANKIB1 ankyrin repeat and IBR domain containing 1 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 "DKFZP434A0225|KIAA1386" Ankyrin repeat domain containing 403 2004-03-02 2016-10-05 54467 ENSG00000001629 OTTHUMG00000155859 uc003ulw.2 AB037807 XM_005250458 CCDS47639 Q9P2G1 MGI:1918047 RGD:1597088 ANKIB1 +HGNC:21027 ANKK1 ankyrin repeat and kinase domain containing 1 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 X-kinase Ankyrin repeat domain containing 403 2003-05-13 2013-01-10 255239 ENSG00000170209 OTTHUMG00000167715 uc001pny.3 AJ541797 NM_178510 CCDS44734 Q8NFD2 15146457 MGI:3045301 RGD:1305538 ANKK1 608774 objectId:1932 +HGNC:26812 ANKLE1 ankyrin repeat and LEM domain containing 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FLJ39369|LEMD6" LEM domain containing 6 ANKRD41 ankyrin repeat domain 41 "Ankyrin repeat domain containing|LEM domain containing" "403|1087" 2005-05-29 2008-03-25 2008-03-25 2016-04-25 126549 ENSG00000160117 OTTHUMG00000150839 uc002nga.3 AK096688 NM_152363 CCDS12354 Q8NAG6 MGI:1918775 RGD:1308184 ANKLE1 +HGNC:29101 ANKLE2 ankyrin repeat and LEM domain containing 2 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "LEMD7|Lem4" LEM domain containing 7 KIAA0692 KIAA0692 "Ankyrin repeat domain containing|LEM domain containing" "403|1087" 2006-01-17 2008-03-25 2008-03-25 2014-11-19 23141 ENSG00000176915 OTTHUMG00000168046 uc001ukx.3 AB014592 XM_005266159 CCDS41869 Q86XL3 9734811 MGI:1261856 RGD:1310191 ANKLE2 616062 445103 +HGNC:20987 ANKMY1 ankyrin repeat and MYND domain containing 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "FLJ20499|ZMYND13" "Zinc fingers MYND-type|Ankyrin repeat domain containing" "87|403" 2003-04-29 2014-11-18 51281 ENSG00000144504 OTTHUMG00000133355 uc002vyz.3 AB034636 NM_017844 "CCDS2535|CCDS2536|CCDS63184|CCDS63185|CCDS74681|CCDS77551" Q9P2S6 MGI:3045261 RGD:1595229 ANKMY1 +HGNC:25370 ANKMY2 ankyrin repeat and MYND domain containing 2 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "DKFZP564O043|ZMYND20" "Zinc fingers MYND-type|Ankyrin repeat domain containing" "87|403" 2004-03-05 2015-04-21 57037 ENSG00000106524 OTTHUMG00000090806 uc003sti.3 AK001740 NM_020319 CCDS5361 Q8IV38 25077969 MGI:2144755 RGD:1306017 ANKMY2 +HGNC:13208 ANKRA2 ankyrin repeat family A member 2 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 ankyrin repeat, family A (RFXANK-like), 2 Ankyrin repeat domain containing 403 2000-09-19 2016-01-06 2016-10-05 57763 ENSG00000164331 OTTHUMG00000102030 uc003kcu.3 AA442702 NM_023039 CCDS4020 Q9H9E1 10965114 MGI:1915808 RGD:1303108 ANKRA2 605787 +HGNC:15819 ANKRD1 ankyrin repeat domain 1 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "C-193|ALRP|CARP|CVARP|MCARP" ankyrin repeat domain 1 (cardiac muscle) Ankyrin repeat domain containing 403 2003-11-10 2016-02-01 2016-10-12 27063 ENSG00000148677 OTTHUMG00000018734 uc001khe.2 X83703 NM_014391 CCDS7412 Q15327 7730328 MGI:1097717 RGD:61989 LRG_379|http://www.lrg-sequence.org/LRG/LRG_379 ANKRD1 609599 448317 +HGNC:495 ANKRD2 ankyrin repeat domain 2 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 ARPP ankyrin repeat domain 2 (stretch responsive muscle) Ankyrin repeat domain containing 403 1999-11-19 2016-02-01 2016-10-05 26287 ENSG00000165887 OTTHUMG00000018860 uc001knw.5 AJ304805 NM_001129981 "CCDS7466|CCDS44468" Q9GZV1 "10873377|15136035|15677738" MGI:1861447 RGD:1305104 ANKRD2 610734 +HGNC:17280 ANKRD6 ankyrin repeat domain 6 protein-coding gene gene with protein product Approved 6q15 06q15 KIAA0957 "diversin|diego homolog (Drosophila)" Ankyrin repeat domain containing 403 2001-12-13 2016-01-15 22881 ENSG00000135299 OTTHUMG00000015202 uc003pni.5 AB023174 XM_005248679 "CCDS47460|CCDS56441|CCDS56442|CCDS56443" Q9Y2G4 25218921 MGI:2154278 RGD:1583731 ANKRD6 610583 +HGNC:18588 ANKRD7 ankyrin repeat domain 7 protein-coding gene gene with protein product Approved 7q31.31 07q31.31 TSA806 testis-specific ankyrin motif containing protein Ankyrin repeat domain containing 403 2002-07-22 2016-10-05 56311 ENSG00000106013 OTTHUMG00000156960 uc064hlc.2 D78334 NM_001077708 CCDS43638 Q92527 8812458 MGI:1922446 RGD:1564660 ANKRD7 610731 +HGNC:20096 ANKRD9 ankyrin repeat domain 9 protein-coding gene gene with protein product Approved 14q32.31 14q32.31 Ankyrin repeat domain containing 403 2002-12-18 2015-10-15 122416 ENSG00000156381 OTTHUMG00000171777 uc001ylz.2 BC015422 XM_005267311 CCDS9973 Q96BM1 MGI:1921501 RGD:1307662 ANKRD9 +HGNC:20265 ANKRD10 ankyrin repeat domain 10 protein-coding gene gene with protein product Approved 13q34 13q34 FLJ20093 Ankyrin repeat domain containing 403 2003-01-16 2016-10-05 55608 ENSG00000088448 OTTHUMG00000017349 uc001vrn.5 AK000100 NM_017664 "CCDS9520|CCDS66580" Q9NXR5 MGI:1921840 RGD:1310501 ANKRD10 +HGNC:39891 ANKRD10-IT1 ANKRD10 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 ANKRD10 intronic transcript 1 (non-protein coding) 2011-04-08 2015-02-25 2015-02-25 100505494 ENSG00000229152 OTTHUMG00000046190 uc058yhs.1 +HGNC:21316 ANKRD11 ankyrin repeat domain 11 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "LZ16|T13" Ankyrin repeat domain containing 403 2004-01-15 2015-08-24 29123 ENSG00000167522 OTTHUMG00000175548 uc002fmx.3 AY373756 NM_013275 CCDS32513 Q6UB99 11483580 MGI:1924337 RGD:1306679 ANKRD11 611192 273977 +HGNC:29135 ANKRD12 ankyrin repeat domain 12 protein-coding gene gene with protein product Approved 18p11.22 18p11.22 "KIAA0874|FLJ20053|GAC-1" Ankyrin repeat domain containing 403 2004-02-05 2015-08-24 23253 ENSG00000101745 OTTHUMG00000131595 uc002knv.4 AY373757 NM_015208 "CCDS11843|CCDS42411" Q6UB98 10048485 MGI:1914357 RGD:1310118 ANKRD12 610616 +HGNC:21268 ANKRD13A ankyrin repeat domain 13A protein-coding gene gene with protein product Approved 12q24.11 12q24.11 NY-REN-25 ANKRD13 ankyrin repeat domain 13 Ankyrin repeat domain containing 403 2003-06-05 2006-06-30 2006-06-30 2016-10-04 88455 ENSG00000076513 OTTHUMG00000169314 uc001tpx.4 AF064604 NM_033121 CCDS9140 Q8IZ07 10508479 MGI:1915670 RGD:1308577 ANKRD13A 615123 +HGNC:26363 ANKRD13B ankyrin repeat domain 13B protein-coding gene gene with protein product Approved 17q11.2 17q11.2 FLJ25555 Ankyrin repeat domain containing 403 2005-07-18 2015-08-26 124930 ENSG00000198720 OTTHUMG00000132731 uc002hei.4 AK092673 NM_152345 CCDS11251 Q86YJ7 MGI:2144501 RGD:1564005 ANKRD13B 615124 +HGNC:25374 ANKRD13C ankyrin repeat domain 13C protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "DKFZP566D1346|dJ677H15.3" Ankyrin repeat domain containing 403 2005-07-18 2015-08-24 81573 ENSG00000118454 OTTHUMG00000009343 uc001dex.5 NM_030816 CCDS648 Q8N6S4 11230166 MGI:2139746 RGD:1595074 ANKRD13C 615125 +HGNC:27880 ANKRD13D ankyrin repeat domain 13D protein-coding gene gene with protein product Approved 11q13.2 11q13.2 ankyrin repeat domain 13 family, member D Ankyrin repeat domain containing 403 2005-07-18 2005-08-09 2016-06-02 2016-06-02 338692 ENSG00000172932 OTTHUMG00000162929 uc001okd.3 AK027313 NM_207354 CCDS31616 Q6ZTN6 MGI:1915673 RGD:1309156 ANKRD13D 615126 +HGNC:23471 ANKRD16 ankyrin repeat domain 16 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 DKFZP434N1511 Ankyrin repeat domain containing 403 2003-11-19 2015-08-24 54522 ENSG00000134461 OTTHUMG00000017610 uc010qat.3 AL137614 XM_166138 "CCDS31136|CCDS31137" Q6P6B7 MGI:2444796 RGD:1311405 ANKRD16 +HGNC:23575 ANKRD17 ankyrin repeat domain 17 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "GTAR|KIAA0697|FLJ22206|NY-BR-16|MASK2" Ankyrin repeat domain containing 403 2003-11-25 2016-10-05 26057 ENSG00000132466 OTTHUMG00000160826 uc003hgp.4 AB014597 NM_032217 "CCDS34003|CCDS34004|CCDS68721" O75179 11165478 MGI:1932101 RGD:1562348 ANKRD17 615929 +HGNC:23643 ANKRD18A ankyrin repeat domain 18A protein-coding gene gene with protein product Approved 9p13.1 09p13.1 "KIAA2015|FLJ35740" Ankyrin repeat domain containing 403 2003-11-28 2014-11-18 253650 ENSG00000180071 OTTHUMG00000186349 uc004abg.5 AB095935 XM_011517836 CCDS55311 Q8IVF6 ANKRD18A +HGNC:23644 ANKRD18B ankyrin repeat domain 18B protein-coding gene gene with protein product Approved 9p13.3 09p13.3 bA255A11.3 Ankyrin repeat domain containing 403 2004-06-02 2014-11-19 441459 ENSG00000230453 OTTHUMG00000019776 uc064spz.1 XM_001718334 A2A2Z9 ANKRD18B +HGNC:43601 ANKRD18CP ankyrin repeat domain 18C, pseudogene pseudogene pseudogene Approved 9q22.33 09q22.33 2011-11-23 2016-08-22 101926917 ENSG00000159712 OTTHUMG00000020318 NR_136286 PGOHUM00000304004 +HGNC:28016 ANKRD18DP ankyrin repeat domain 18D, pseudogene pseudogene pseudogene Approved 3q29 03q29 2011-11-23 2014-11-19 348840 ENSG00000226435 OTTHUMG00000150228 BC042518 NR_003291 PGOHUM00000237916 +HGNC:43609 ANKRD18EP ankyrin repeat domain 18E, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 2011-11-23 2011-11-23 100131031 ENSG00000217165 OTTHUMG00000014640 NG_028818 PGOHUM00000243614 +HGNC:22567 ANKRD19P ankyrin repeat domain 19, pseudogene pseudogene pseudogene Approved 9q22.31 09q22.31 FLJ36178 ANKRD19 "ankyrin repeat domain 19|ankyrin repeat domain 19 pseudogene" 2003-11-28 2011-04-27 2011-04-27 2016-10-05 138649 ENSG00000187984 OTTHUMG00000020237 BC038951 NR_026868 Q9H560 +HGNC:23665 ANKRD20A1 ankyrin repeat domain 20 family member A1 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 DKFZp434A171 ANKRD20A "ankyrin repeat domain 20A|ankyrin repeat domain 20 family, member A1" Ankyrin repeat domain containing 403 2004-05-27 2005-08-23 2015-11-18 2015-11-18 84210 ENSG00000260691 OTTHUMG00000188594 uc004aeu.4 AL136793 XM_005272532 CCDS6620 Q5TYW2 ANKRD20A1 +HGNC:31979 ANKRD20A2 ankyrin repeat domain 20 family member A2 protein-coding gene gene with protein product Approved 9p11.2 09p11.2 ankyrin repeat domain 20 family, member A2 Ankyrin repeat domain containing 403 2005-08-23 2015-11-18 2016-10-05 441430 ENSG00000183148 OTTHUMG00000058641 uc004acd.4 NM_001012421 CCDS35028 Q5SQ80 ANKRD20A2 +HGNC:31981 ANKRD20A3 ankyrin repeat domain 20 family member A3 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 ankyrin repeat domain 20 family, member A3 Ankyrin repeat domain containing 403 2005-08-23 2015-11-18 2015-11-18 441425 ENSG00000276203 OTTHUMG00000188432 uc033cut.1 XR_001746295 CCDS35029 Q5VUR7 ANKRD20A3 +HGNC:31982 ANKRD20A4 ankyrin repeat domain 20 family member A4 protein-coding gene gene with protein product Approved 9q13 09q13 OTTHUMG00000066855 ankyrin repeat domain 20 family, member A4 Ankyrin repeat domain containing 403 2006-06-30 2015-11-18 2016-10-05 728747 ENSG00000172014 OTTHUMG00000066855 uc004afn.4 NM_001098805 CCDS43828 Q4UJ75 ANKRD20A4 +HGNC:33833 ANKRD20A5P ankyrin repeat domain 20 family member A5, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 MGC26718 ANKRD20A5 "ankyrin repeat domain 20 family, member A5|ankyrin repeat domain 20 family, member A5, pseudogene" 2009-02-27 2011-06-01 2015-11-18 2015-11-18 440482 ENSG00000186481 OTTHUMG00000157172 BC022023 NR_040113 A0PJZ0 ANKRD20A5P PGOHUM00000235008 +HGNC:37714 ANKRD20A6P ankyrin repeat domain 20 family member A6, pseudogene pseudogene pseudogene Approved Yq11.21 Yq11.21 ankyrin repeat domain 20 family, member A6, pseudogene 2010-02-04 2015-11-18 2016-10-04 728157 ENSG00000274502 OTTHUMG00000188066 XM_001126719 PGOHUM00000305639 +HGNC:31980 ANKRD20A7P ankyrin repeat domain 20 family member A7, pseudogene pseudogene pseudogene Approved 9p11.1 09p11.1 ankyrin repeat domain 20 family, member A7, pseudogene 2010-09-30 2015-11-18 2016-10-05 653436 ENSG00000236816 OTTHUMG00000066784 NG_012726 PGOHUM00000236098 +HGNC:23666 ANKRD20A8P ankyrin repeat domain 20 family member A8, pseudogene pseudogene pseudogene Approved 2q11.1 02q11.1 ANKRD20B "ankyrin repeat domain 20B|ankyrin repeat domain 20 family, member A8, pseudogene" 2004-07-09 2010-12-15 2015-11-18 2015-11-18 729171 ENSG00000229089 OTTHUMG00000155138 NR_003366 Q5CZ79 PGOHUM00000240189 +HGNC:42023 ANKRD20A9P ankyrin repeat domain 20 family member A9, pseudogene pseudogene pseudogene Approved 13q11 13q11 ankyrin repeat domain 20 family, member A9, pseudogene 2011-06-01 2015-11-18 2015-11-18 284232 ENSG00000206192 OTTHUMG00000016458 NR_138091 PGOHUM00000248293 +HGNC:39707 ANKRD20A10P ankyrin repeat domain 20 family member A10, pseudogene pseudogene pseudogene Approved 13q12.12 13q12.12 ANKRD20A4P1 "ankyrin repeat domain 20 family, member A4 pseudogene 1|ankyrin repeat domain 20 family, member A10, pseudogene" 2011-03-23 2011-06-01 2015-11-18 2015-11-18 100421422 ENSG00000226695 OTTHUMG00000016591 NG_024841 PGOHUM00000248335 +HGNC:42024 ANKRD20A11P ankyrin repeat domain 20 family member A11, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 C21orf81 "chromosome 21 open reading frame 81|ankyrin repeat domain 20 family, member A11, pseudogene" 2011-06-01 2015-11-18 2015-11-18 391267 ENSG00000215559 OTTHUMG00000074237 NR_027270 PGOHUM00000239030 +HGNC:43603 ANKRD20A12P ankyrin repeat domain 20 family member A12, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 ankyrin repeat domain 20 family, member A12, pseudogene 2011-11-23 2015-11-18 2015-11-18 100874392 OTTHUMG00000013384 NR_046228 Q8NF67 PGOHUM00000244178 +HGNC:43604 ANKRD20A13P ankyrin repeat domain 20 family member A13, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 ankyrin repeat domain 20 family, member A13, pseudogene 2011-11-23 2015-11-18 2015-11-18 100132733 NG_029281 PGOHUM00000244187 +HGNC:43605 ANKRD20A14P ankyrin repeat domain 20 family member A14, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 ankyrin repeat domain 20 family, member A14, pseudogene 2011-11-23 2015-11-18 2015-11-18 100533719 OTTHUMG00000085416 NG_028834 PGOHUM00000244891 +HGNC:43606 ANKRD20A15P ankyrin repeat domain 20 family member A15, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 ankyrin repeat domain 20 family, member A15, pseudogene 2011-11-23 2015-11-18 2015-11-18 100533720 NG_028835 PGOHUM00000244902 +HGNC:43607 ANKRD20A16P ankyrin repeat domain 20 family member A16, pseudogene pseudogene pseudogene Approved 21p11.2 21p11.2 ankyrin repeat domain 20 family, member A16, pseudogene 2011-11-23 2015-11-18 2015-11-18 100421427 NG_025049 PGOHUM00000239106 +HGNC:43608 ANKRD20A17P ankyrin repeat domain 20 family member A17, pseudogene pseudogene pseudogene Approved 4p11 04p11 ankyrin repeat domain 20 family, member A17, pseudogene 2011-11-23 2015-11-18 2015-11-18 100421363 ENSG00000251056 OTTHUMG00000160600 NG_025102 PGOHUM00000245523 +HGNC:23756 ANKRD20A18P ankyrin repeat domain 20 family member A18, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 C21orf126 "chromosome 21 open reading frame 126|ankyrin repeat domain 20 family, member A18, pseudogene" 2003-12-08 2011-11-23 2015-11-18 2015-11-18 391269 ENSG00000249493 OTTHUMG00000074259 NG_009314 PGOHUM00000239143 +HGNC:42737 ANKRD20A19P ankyrin repeat domain 20 family member A19, pseudogene pseudogene pseudogene Approved 13q12.12 13q12.12 ankyrin repeat domain 20 family, member A19, pseudogene 2011-11-23 2015-11-18 2015-11-18 400110 ENSG00000196593 OTTHUMG00000016572 NR_073430 PGOHUM00000248331 +HGNC:32319 ANKRD20A20P ankyrin repeat domain 20 family member A20, pseudogene pseudogene pseudogene Approved 9q21.11 09q21.11 CCDC29 "coiled-coil domain containing 29|ankyrin repeat domain 20 family, member A20, pseudogene" 2006-06-30 2012-07-12 2015-11-18 2015-11-18 728788 NG_016332 +HGNC:52329 ANKRD20A21P ankyrin repeat domain 20 family member A21, pseudogene pseudogene pseudogene Approved 20q11.21 20q11.21 2016-07-22 2016-07-22 102723552 ENSG00000277112 OTTHUMG00000189351 XR_001754573 PGOHUM00000305985 +HGNC:28321 ANKRD22 ankyrin repeat domain 22 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 MGC22805 Ankyrin repeat domain containing 403 2004-05-27 2014-11-19 118932 ENSG00000152766 OTTHUMG00000018699 uc001kfj.5 BC021671 NM_144590 CCDS7390 Q5VYY1 12477932 MGI:1277101 RGD:1307862 ANKRD22 +HGNC:24470 ANKRD23 ankyrin repeat domain 23 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "DARP|FLJ32449|MARP3" diabetes related ankyrin repeat protein Ankyrin repeat domain containing 403 2004-01-12 2014-11-19 200539 ENSG00000163126 OTTHUMG00000130534 uc002sxa.4 NM_144994 CCDS2027 Q86SG2 12456686 MGI:1925571 RGD:1310398 ANKRD23 610736 +HGNC:29424 ANKRD24 ankyrin repeat domain 24 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 KIAA1981 Ankyrin repeat domain containing 403 2004-02-02 2015-08-24 170961 ENSG00000089847 OTTHUMG00000181865 uc010dtt.1 AB075861 XM_114000 CCDS45925 Q8TF21 11853319 MGI:1890394 RGD:1311385 ANKRD24 +HGNC:29186 ANKRD26 ankyrin repeat domain 26 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 KIAA1074 THC2 thrombocytopenia 2 (autosomal dominant) Ankyrin repeat domain containing 403 2004-02-04 2016-10-12 22852 ENSG00000107890 OTTHUMG00000017851 uc009xku.2 AB028997 XM_017015928 CCDS41499 Q9UPS8 "10470851|21211618" MGI:1917887 RGD:1310736 LRG_605|http://www.lrg-sequence.org/LRG/LRG_605 ANKRD26 610855 260545 +HGNC:32955 ANKRD26P1 ankyrin repeat domain 26 pseudogene 1 pseudogene pseudogene Approved 16q11.2 16q11.2 FLJ43980 2009-06-12 2009-06-12 2014-11-19 124149 ENSG00000261239 OTTHUMG00000175593 BC070117 NR_026556 Q6NSI1 PGOHUM00000262118 +HGNC:39687 ANKRD26P2 ankyrin repeat domain 26 pseudogene 2 pseudogene pseudogene Approved 13q13.3 13q13.3 2011-03-23 2011-03-23 646929 ENSG00000235550 OTTHUMG00000016762 NG_006568 PGOHUM00000248371 +HGNC:39689 ANKRD26P3 ankyrin repeat domain 26 pseudogene 3 pseudogene pseudogene Approved 13q12.11 13q12.11 LINC00414 long intergenic non-protein coding RNA 414 2011-03-23 2014-11-19 100101938 ENSG00000237636 OTTHUMG00000016484 NR_027248 PGOHUM00000248306 +HGNC:39690 ANKRD26P4 ankyrin repeat domain 26 pseudogene 4 pseudogene pseudogene Approved 13q12.3 13q12.3 2011-03-23 2014-11-19 100873882 ENSG00000229427 OTTHUMG00000016689 NG_032348 PGOHUM00000248560 +HGNC:25310 ANKRD27 ankyrin repeat domain 27 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "FLJ00040|DKFZp434L0718|VARP" Vps9 domain and ankyrin-repeat-containing protein ankyrin repeat domain 27 (VPS9 domain) "Ankyrin repeat domain containing|VPS9 domain containing" "403|928" 2004-02-11 2015-11-17 2016-10-05 84079 ENSG00000105186 OTTHUMG00000180225 uc002ntn.2 AK054561 NM_032139 CCDS32986 Q96NW4 16525121 MGI:2444103 RGD:1307106 ANKRD27 +HGNC:29024 ANKRD28 ankyrin repeat domain 28 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "KIAA0379|PITK|PP6-ARS-A|PPP1R65" "phosphatase interactor targeting K protein|protein phosphatase 6 ankyrin repeat subunit A|protein phosphatase 1, regulatory subunit 65" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits|Protein phosphatase 6 regulatory subunits" "403|694|699" 2004-02-26 2015-09-11 23243 ENSG00000206560 OTTHUMG00000155379 uc003caj.3 AY367056 NM_015199 "CCDS46769|CCDS74908" O15084 "9205841|19458477" MGI:2145661 RGD:1559931 ANKRD28 611122 +HGNC:27110 ANKRD29 ankyrin repeat domain 29 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 FLJ25053 Ankyrin repeat domain containing 403 2004-04-30 2015-08-24 147463 ENSG00000154065 OTTHUMG00000131875 uc002kun.4 AK057782 NM_173505 "CCDS11879|CCDS77164" Q8N6D5 MGI:2687055 RGD:1587260 ANKRD29 +HGNC:17234 ANKRD30A ankyrin repeat domain 30A protein-coding gene gene with protein product Approved 10p11.21 10p11.21 NY-BR-1 breast cancer antigen NY-BR-1 Ankyrin repeat domain containing 403 2004-05-12 2014-11-19 91074 ENSG00000148513 OTTHUMG00000017968 uc057sua.1 AF269087 NM_052997 CCDS7193 Q9BXX3 11280766 RGD:1309783 ANKRD30A 610856 +HGNC:24165 ANKRD30B ankyrin repeat domain 30B protein-coding gene gene with protein product Approved 18p11.21 18p11.21 NY-BR-1.1 Ankyrin repeat domain containing 403 2004-05-12 2014-11-19 374860 ENSG00000180777 OTTHUMG00000178841 uc060nsr.1 BC028407 NM_001145029 CCDS54182 Q9BXX2 11280766 ANKRD30B 616565 +HGNC:35167 ANKRD30BL ankyrin repeat domain 30B like protein-coding gene gene with protein product Approved 2q21.2 02q21.2 "NCRNA00164|ANKRD30BP3" "non-protein coding RNA 164|ankyrin repeat domain 30B pseudogene 3" Ankyrin repeat domain containing 403 2008-10-24 2010-06-14 2016-08-11 2016-08-11 554226 ENSG00000163046 OTTHUMG00000153491 uc061nxe.1 NR_027019 A7E2S9 17114284 ANKRD30BL +HGNC:19722 ANKRD30BP1 ankyrin repeat domain 30B pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 PRED4 "C21orf110|ANKRD30BP" "chromosome 21 open reading frame 110|ankyrin repeat domain 30B pseudogene" 2003-10-02 2010-06-14 2010-06-14 2014-11-19 642460 ENSG00000175302 OTTHUMG00000074201 BQ429618 NG_009612 +HGNC:16620 ANKRD30BP2 ankyrin repeat domain 30B pseudogene 2 pseudogene pseudogene Approved 21q11.2 21q11.2 "CT85|CTSP-1" cancer/testis antigen 85 C21orf99 chromosome 21 open reading frame 99 2002-11-26 2010-06-14 2010-06-14 2010-06-14 149992 ENSG00000224309 OTTHUMG00000074164 AF427490 NR_026916 "12036297|17114284" +HGNC:27873 ANKRD30BP3 ankyrin repeat domain 30B pseudogene 3 pseudogene pseudogene Approved 10q11.21 10q11.21 2013-01-03 2013-01-03 338579 ENSG00000230501 OTTHUMG00000018076 NR_033891 12477932 PGOHUM00000238762 +HGNC:26853 ANKRD31 ankyrin repeat domain 31 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 FLJ40191 Ankyrin repeat domain containing 403 2004-06-04 2014-11-18 256006 ENSG00000145700 OTTHUMG00000162649 uc003kdo.2 AK097510 NM_001164443 CCDS47233 Q8N7Z5 MGI:5006716 RGD:2323520 ANKRD31 +HGNC:13788 ANKRD33 ankyrin repeat domain 33 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "DKFZp686O1689|PANKY" C12orf7 chromosome 12 open reading frame 7 Ankyrin repeat domain containing 403 2000-11-08 2005-01-07 2005-01-07 2015-08-24 341405 ENSG00000167612 OTTHUMG00000169506 uc001rzf.5 NM_182608 "CCDS8815|CCDS44892" Q7Z3H0 20026326 MGI:2443398 RGD:1586880 ANKRD33 +HGNC:35240 ANKRD33B ankyrin repeat domain 33B protein-coding gene gene with protein product Approved 5p15.2 05p15.2 Ankyrin repeat domain containing 403 2008-10-29 2015-08-24 651746 ENSG00000164236 OTTHUMG00000162050 uc021xwp.2 XM_001130634 CCDS47191 A6NCL7 MGI:1917904 RGD:1564227 +HGNC:41298 ANKRD33B-AS1 ANKRD33B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p15.2 05p15.2 ANKRD33B antisense RNA 1 (non-protein coding) 2011-06-08 2012-08-15 2014-11-19 100874247 ENSG00000250106 OTTHUMG00000162124 uc063ciy.1 +HGNC:41506 ANKRD33B-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:27639 ANKRD34A ankyrin repeat domain 34A protein-coding gene gene with protein product Approved 1q21.1 01q21.1 ANKRD34 ankyrin repeat domain 34 Ankyrin repeat domain containing 403 2005-02-02 2007-11-20 2007-11-20 2015-09-10 284615 ENSG00000272031 OTTHUMG00000013740 uc021ouy.3 AK128050 NM_001039888 CCDS72874 Q69YU3 MGI:3617846 RGD:1308412 ANKRD34A +HGNC:33736 ANKRD34B ankyrin repeat domain 34B protein-coding gene gene with protein product Approved 5q14.1 05q14.1 DP58 Ankyrin repeat domain containing 403 2007-11-20 2014-11-19 340120 ENSG00000189127 OTTHUMG00000162541 uc003kgw.4 NM_001004441 CCDS34194 A5PLL1 MGI:2443245 RGD:1594383 ANKRD34B +HGNC:33888 ANKRD34C ankyrin repeat domain 34C protein-coding gene gene with protein product Approved 15q25.1 15q25.1 Ankyrin repeat domain containing 403 2007-11-20 2013-01-10 390616 ENSG00000235711 OTTHUMG00000172072 uc059mho.1 NM_001146341 CCDS53965 P0C6C1 MGI:2685617 RGD:1305403 ANKRD34C +HGNC:48618 ANKRD34C-AS1 ANKRD34C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q25.1 15q25.1 2014-11-21 2014-11-21 729911 ENSG00000259234 OTTHUMG00000172071 "DA336675|DA364073" NR_038997 +HGNC:26323 ANKRD35 ankyrin repeat domain 35 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 FLJ25124 Ankyrin repeat domain containing 403 2005-02-02 2015-08-28 148741 ENSG00000198483 OTTHUMG00000013743 uc001eob.2 AK091120 NM_144698 "CCDS72867|CCDS72868" Q8N283 MGI:2442590 RGD:1305527 ANKRD35 +HGNC:24079 ANKRD36 ankyrin repeat domain 36 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 UNQ2430 Ankyrin repeat domain containing 403 2005-02-07 2014-11-18 375248 ENSG00000135976 OTTHUMG00000155256 uc010yva.3 BC046186 XM_017004009 CCDS54379 A6QL64 12975309 RGD:735187 ANKRD36 +HGNC:29333 ANKRD36B ankyrin repeat domain 36B protein-coding gene gene with protein product Approved 2q11.2 02q11.2 FLJ21281 "melanoma-associated antigen|CLL-associated antigen KW-1" KIAA1641 KIAA1641 Ankyrin repeat domain containing 403 2004-07-26 2008-03-25 2008-03-25 2014-11-18 57730 ENSG00000196912 OTTHUMG00000130547 uc010fid.2 AK024934 NM_025190 CCDS74543 Q8N2N9 10997877 +HGNC:28169 ANKRD36BP1 ankyrin repeat domain 36B pseudogene 1 pseudogene pseudogene Approved 1q24.2 01q24.2 MGC12538 "ANKRD26L1|ANKRD36BL1" "ankyrin repeat domain 26-like 1|ankyrin repeat domain 36B-like 1" 2005-04-07 2010-02-16 2010-02-16 2014-11-19 84832 ENSG00000214262 OTTHUMG00000040770 NR_026844 Q96IX9 ANKRD36BP1 +HGNC:33607 ANKRD36BP2 ankyrin repeat domain 36B pseudogene 2 pseudogene pseudogene Approved 2p11.2 02p11.2 2010-09-30 2016-10-05 645784 ENSG00000230006 OTTHUMG00000151690 NR_015424 +HGNC:32946 ANKRD36C ankyrin repeat domain 36C protein-coding gene gene with protein product Approved 2q11.1 02q11.1 DKFZp667P0924 protein immuno-reactive with anti-PTH polyclonal antibodies Ankyrin repeat domain containing 403 2011-12-01 2014-11-19 400986 ENSG00000174501 OTTHUMG00000155211 uc061lua.1 AL832836 NM_001010914 Q5JPF3 ANKRD36C +HGNC:37759 ANKRD36P1 ankyrin repeat domain 36 pseudogene 1 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-02-16 2014-11-19 100132420 ENSG00000188399 OTTHUMG00000036761 NG_029080 +HGNC:29593 ANKRD37 ankyrin repeat domain 37 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 Lrp2bp Ankyrin repeat domain containing 403 2005-02-22 2016-01-14 353322 ENSG00000186352 OTTHUMG00000160459 uc003ixm.4 AY296056 NM_181726 CCDS3841 Q7Z713 MGI:3603344 RGD:1565715 ANKRD37 +HGNC:28640 ANKRD39 ankyrin repeat domain 39 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 MGC41816 Ankyrin repeat domain containing 403 2005-05-27 2015-08-24 51239 ENSG00000213337 OTTHUMG00000130530 uc002sxd.5 BC031303 NM_016466 CCDS2028 Q53RE8 11042152 MGI:1914816 RGD:1559504 ANKRD39 +HGNC:28233 ANKRD40 ankyrin repeat domain 40 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 MGC15396 Ankyrin repeat domain containing 403 2005-05-29 2013-01-10 91369 ENSG00000154945 OTTHUMG00000162255 uc002iso.4 BC012978 NM_052855 CCDS11572 Q6AI12 12477932 MGI:1918702 RGD:1594678 ANKRD40 +HGNC:26752 ANKRD42 ankyrin repeat domain 42 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "FLJ37874|SARP|PPP1R79" protein phosphatase 1, regulatory subunit 79 "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 2005-05-29 2015-08-24 338699 ENSG00000137494 OTTHUMG00000167075 uc010rsv.2 AK095193 NM_182603 "CCDS8265|CCDS73355|CCDS73356|CCDS76457|CCDS76458|CCDS76459" Q8N9B4 MGI:1921095 RGD:1310789 ANKRD42 +HGNC:25259 ANKRD44 ankyrin repeat domain 44 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 PP6-ARS-B protein phosphatase 6 ankyrin repeat subunit B "Ankyrin repeat domain containing|Protein phosphatase 6 regulatory subunits" "403|699" 2005-05-29 2016-04-25 91526 ENSG00000065413 OTTHUMG00000154411 uc021vuj.1 AK097086 NM_153697 "CCDS33355|CCDS74619" Q8N8A2 MGI:3045243 RGD:1561893 ANKRD44 +HGNC:41477 ANKRD44-IT1 ANKRD44 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q33.1 02q33.1 ANKRD44 intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 101927547 ENSG00000236977 OTTHUMG00000154409 uc032oos.1 NR_046837 +HGNC:24786 ANKRD45 ankyrin repeat domain 45 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "FLJ45235|CT117" cancer/testis antigen 117 Ankyrin repeat domain containing 403 2005-06-03 2014-11-19 339416 ENSG00000183831 OTTHUMG00000040546 uc001gja.2 NM_198493 CCDS1309 Q5TZF3 MGI:1921094 RGD:1311153 ANKRD45 +HGNC:27229 ANKRD46 ankyrin repeat domain 46 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 Ankyrin repeat domain containing 403 2005-07-20 2015-02-24 157567 ENSG00000186106 OTTHUMG00000164724 uc003yjo.3 AB077205 NM_198401 "CCDS6287|CCDS59109" Q86W74 MGI:1916089 RGD:1309382 ANKRD46 +HGNC:25970 ANKRD49 ankyrin repeat domain 49 protein-coding gene gene with protein product Approved 11q21 11q21 "FLJ20189|FGIF|GBIF" Ankyrin repeat domain containing 403 2005-09-13 2016-01-14 54851 ENSG00000168876 OTTHUMG00000167793 uc001pew.4 AF025354 NM_017704 CCDS8300 Q8WVL7 11162141 MGI:1930842 RGD:1311759 ANKRD49 +HGNC:29223 ANKRD50 ankyrin repeat domain 50 protein-coding gene gene with protein product Approved 4q28.1 04q28.1 KIAA1223 Ankyrin repeat domain containing 403 2005-12-06 2015-07-14 57182 ENSG00000151458 OTTHUMG00000161398 uc010inw.4 AB033049 NM_020337 "CCDS34060|CCDS54802" Q9ULJ7 MGI:2139777 RGD:1311665 ANKRD50 +HGNC:26614 ANKRD52 ankyrin repeat domain 52 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "FLJ34236|PP6-ARS-C" protein phosphatase 6 ankyrin repeat subunit C "Ankyrin repeat domain containing|Protein phosphatase 6 regulatory subunits" "403|699" 2006-01-17 2015-09-11 283373 ENSG00000139645 OTTHUMG00000170329 uc001skm.5 AK091555 NM_173595 CCDS44920 Q8NB46 MGI:2444029 RGD:1307124 ANKRD52 +HGNC:25691 ANKRD53 ankyrin repeat domain 53 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "FLJ12056|FLJ36160" Ankyrin repeat domain containing 403 2006-03-24 2014-11-19 79998 ENSG00000144031 OTTHUMG00000129712 uc002shk.5 BC035234 NM_024933 "CCDS1913|CCDS46321" Q8N9V6 MGI:1922555 RGD:1561200 ANKRD53 617009 +HGNC:25185 ANKRD54 ankyrin repeat domain 54 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 LIAR Lyn-interacting ankyrin repeat protein Ankyrin repeat domain containing 403 2006-07-06 2015-03-24 129138 ENSG00000100124 OTTHUMG00000150663 uc003auc.4 BC014641 NM_138797 CCDS13959 Q6NXT1 "15461802|22527282" MGI:2444209 RGD:1309552 ANKRD54 613383 +HGNC:39214 ANKRD54P1 ankyrin repeat domain 54 pseudogene 1 pseudogene pseudogene Approved 10q11.21 10q11.21 2010-11-24 2010-11-24 100419962 ENSG00000236442 OTTHUMG00000018075 NG_025432 PGOHUM00000238445 +HGNC:25681 ANKRD55 ankyrin repeat domain 55 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 FLJ11795 Ankyrin repeat domain containing 403 2006-07-12 2014-11-19 79722 ENSG00000164512 OTTHUMG00000162305 uc003jqu.4 AK021857 NM_024669 CCDS34161 Q3KP44 MGI:1924568 RGD:1307735 ANKRD55 615189 355492 +HGNC:37984 ANKRD57P1 ankyrin repeat domain 57 pseudogene 1 pseudogene pseudogene Approved Yq11.1 Yq11.1 2010-03-16 2014-11-19 100131984 NG_022994 PGOHUM00000233738 +HGNC:16217 ANKRD60 ankyrin repeat domain 60 protein-coding gene gene with protein product Approved 20q13.32 20q13.32 bA196N14.3 C20orf86 chromosome 20 open reading frame 86 Ankyrin repeat domain containing 403 2001-07-17 2008-03-25 2008-03-25 2015-07-14 140731 ENSG00000124227 OTTHUMG00000032837 uc061xzo.1 AL354776 XM_001134442 CCDS77596 Q9BZ19 MGI:1917315 RGD:1306979 ANKRD60 +HGNC:22467 ANKRD61 ankyrin repeat domain 61 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 Ankyrin repeat domain containing 403 2008-09-18 2016-10-05 100310846 ENSG00000157999 OTTHUMG00000154561 uc031swn.2 NM_001271700 CCDS64590 A6NGH8 MGI:1913979 RGD:1586393 +HGNC:35241 ANKRD62 ankyrin repeat domain 62 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 DKFZp779B1634 Ankyrin repeat domain containing 403 2008-11-27 2014-01-21 342850 ENSG00000181626 OTTHUMG00000180673 uc031rhk.2 BX648696 XM_001715728 CCDS67439 A6NC57 ANKRD62 +HGNC:42363 ANKRD62P1 ankyrin repeat domain 62 pseudogene 1 pseudogene pseudogene Approved 22q11.1 22q11.1 2011-07-04 2012-06-27 107080639 ENSG00000259271 OTTHUMG00000149993 NG_046683 PGOHUM00000246201 +HGNC:42393 ANKRD62P1-PARP4P3 ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene other readthrough Approved 22q11.1 22q11.1 VWFP1-ANKRD62P1-PARP4P3 ANKRD62P1-PARP4P3 readthrough (non-protein coding) 2011-07-07 2013-04-23 2015-07-30 23783 ENSG00000189295 OTTHUMG00000186061 uc062bfe.1 NR_040115 +HGNC:40027 ANKRD63 ankyrin repeat domain 63 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 Ankyrin repeat domain containing 403 2011-05-05 2014-11-19 100131244 ENSG00000230778 OTTHUMG00000176892 uc021sjf.1 NM_001190479 CCDS53929 C9JTQ0 MGI:2686183 RGD:1595953 ANKRD63 +HGNC:42950 ANKRD65 ankyrin repeat domain 65 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 Ankyrin repeat domain containing 403 2011-10-07 2013-01-10 441869 ENSG00000235098 OTTHUMG00000002911 uc010nyo.3 XM_011541489 "CCDS55558|CCDS57962|CCDS57963" E5RJM6 MGI:2685285 RGD:1588232 ANKRD65 +HGNC:44669 ANKRD66 ankyrin repeat domain 66 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 Ankyrin repeat domain containing 403 2012-12-11 2015-08-24 100287718 ENSG00000230062 OTTHUMG00000014791 uc011dwf.3 AK304342 NM_001162435 CCDS59024 B4E2M5 MGI:1925106 RGD:1560151 +HGNC:20961 ANKS1A ankyrin repeat and sterile alpha motif domain containing 1A protein-coding gene gene with protein product Approved 6p21.31 06p21.31 KIAA0229 ANKS1 "ankyrin repeat and SAM domain containing 1|ankyrin repeat and sterile alpha motif domain containing 1" "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 2003-04-24 2006-02-17 2006-02-17 2015-08-28 23294 ENSG00000064999 OTTHUMG00000014559 uc003ojx.5 D86982 XM_166478 CCDS4798 Q92625 9039502 MGI:2446180 RGD:1309183 ANKS1A 608994 +HGNC:24600 ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "EB-1|AIDA-1|cajalin-2|ANKS2" "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 2006-02-17 2016-01-14 56899 ENSG00000185046 OTTHUMG00000170308 uc001tge.3 AF145204 NM_020140 "CCDS55864|CCDS55865|CCDS55866|CCDS55867|CCDS55868|CCDS55869|CCDS55870|CCDS55871|CCDS55872" Q7Z6G8 "10490826|12415113" MGI:1924781 RGD:1565556 ANKS1B 607815 +HGNC:29422 ANKS3 ankyrin repeat and sterile alpha motif domain containing 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "KIAA1977|FLJ32345|FLJ32767" "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 2006-02-17 2014-11-19 124401 ENSG00000168096 OTTHUMG00000129478 uc002cxj.3 AK057329 NM_133450 "CCDS10520|CCDS73820|CCDS76813" Q6ZW76 11853319 MGI:1919865 RGD:1305833 ANKS3 +HGNC:26795 ANKS4B ankyrin repeat and sterile alpha motif domain containing 4B protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "FLJ38819|HARP" "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 2006-02-17 2016-01-14 257629 ENSG00000175311 OTTHUMG00000177371 uc010bwp.2 AK096138 NM_145865 CCDS42130 Q8N8V4 MGI:1919324 RGD:1584204 ANKS4B 609901 +HGNC:26724 ANKS6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "FLJ36928|NPHP16" "SAMD6|ANKRD14" "sterile alpha motif domain containing 6|ankyrin repeat domain 14" "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 2003-12-19 2006-02-17 2006-02-17 2016-10-05 203286 ENSG00000165138 OTTHUMG00000020347 uc004ayu.4 AK094247 NM_173551 CCDS43856 Q68DC2 23793029 MGI:1922941 RGD:3334 ANKS6 615370 361188 +HGNC:29642 ANKUB1 ankyrin repeat and ubiquitin domain containing 1 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 C3orf16 chromosome 3 open reading frame 16 Ankyrin repeat domain containing 403 2004-07-29 2011-05-10 2011-05-10 2014-11-18 389161 ENSG00000206199 OTTHUMG00000159615 uc003exl.4 AK027233 NM_001144960 CCDS82857 A6NFN9 MGI:2685256 RGD:2320491 ANKUB1 +HGNC:25527 ANKZF1 ankyrin repeat and zinc finger domain containing 1 protein-coding gene gene with protein product Approved 2q35 02q35 "FLJ10415|ZNF744" "Zinc fingers C2H2-type|Ankyrin repeat domain containing" "28|403" 2006-02-22 2015-01-12 55139 ENSG00000163516 OTTHUMG00000154533 uc002vkg.3 AF364318 NM_018089 "CCDS42821|CCDS63129" Q9H8Y5 21896481 MGI:1098746 RGD:1359242 ANKZF1 +HGNC:14082 ANLN anillin actin binding protein protein-coding gene gene with protein product Approved 7p14.2 07p14.2 "ANILLIN|Scraps|scra" "anillin (Drosophila Scraps homolog), actin binding protein|anillin, actin binding protein (scraps homolog, Drosophila)" Pleckstrin homology domain containing 682 2001-01-03 2015-07-02 2016-10-05 54443 ENSG00000011426 OTTHUMG00000023143 uc003tff.4 AF273437 NM_018685 "CCDS5447|CCDS64628" Q9NQW6 10931866 MGI:1920174 RGD:1561367 ANLN 616027 410859 +HGNC:21625 ANO1 anoctamin 1 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 "TAOS2|FLJ10261|DOG1" "ORAOV2|TMEM16A" "oral cancer overexpressed 2|transmembrane protein 16A|anoctamin 1, calcium activated chloride channel" Anoctamins 865 2003-10-16 2008-08-28 2016-03-07 2016-10-05 55107 ENSG00000131620 OTTHUMG00000167204 uc001opj.4 BC033036 NM_018043 CCDS44663 Q5XXA6 "15067359|18724360|24692353" MGI:2142149 RGD:1310786 ANO1 610108 objectId:708 +HGNC:40016 ANO1-AS1 ANO1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q13.3 11q13.3 ANO1 antisense RNA 1 (non-protein coding) 2011-04-28 2012-08-15 2014-11-19 100873981 ENSG00000254902 OTTHUMG00000167205 uc058eru.1 +HGNC:33275 ANO1-AS2 ANO1 antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 11q13.3 11q13.3 "C11orf78|NCRNA00224" "chromosome 11 open reading frame 78|non-protein coding RNA 224|ANO1 antisense RNA 2 (non-protein coding)|ANO1 antisense RNA 2" 2007-01-29 2011-04-28 2012-10-17 2012-10-17 100009613 ENSG00000254417 OTTHUMG00000167162 uc058erk.1 "AW592641|EF419887" NR_103835 +HGNC:1183 ANO2 anoctamin 2 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 transmembrane protein 16B (eight membrane-spanning domains) "C12orf3|TMEM16B" "chromosome 12 open reading frame 3|transmembrane protein 16B|anoctamin 2, calcium activated chloride channel" Anoctamins 865 2000-08-24 2008-08-28 2016-03-07 2016-10-04 57101 ENSG00000047617 OTTHUMG00000168264 uc058kbl.1 AJ272204 NM_020373 CCDS44807 Q9NQ90 "12739008|15067359|24692353" MGI:2387214 RGD:1591606 ANO2 610109 +HGNC:14004 ANO3 anoctamin 3 protein-coding gene gene with protein product Approved 11p14.2 11p14.2 "GENX-3947|DYT23" transmembrane protein 16C (eight membrane-spanning domains) "C11orf25|TMEM16C" "chromosome 11 open reading frame 25|transmembrane protein 16C" Anoctamins 865 2000-11-28 2008-08-28 2008-08-28 2015-08-28 63982 ENSG00000134343 OTTHUMG00000166096 uc001mqt.5 AJ300461 NM_031418 "CCDS31447|CCDS81557" Q9BYT9 "12739008|15067359|23200863|24692353" MGI:3613666 RGD:1308873 ANO3 610110 320756 +HGNC:23837 ANO4 anoctamin 4 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "FLJ34221|FLJ34272|FLJ35277" TMEM16D transmembrane protein 16D Anoctamins 865 2003-12-17 2008-08-28 2008-08-28 2016-10-04 121601 ENSG00000151572 OTTHUMG00000170465 uc001thw.3 AK091540 NM_178826 "CCDS31884|CCDS66445" Q32M45 "12739008|15067359|24692353" MGI:2443344 RGD:1310252 ANO4 610111 +HGNC:27337 ANO5 anoctamin 5 protein-coding gene gene with protein product Approved 11p14.3 11p14.3 GDD1 "TMEM16E|LGMD2L" "transmembrane protein 16E|limb girdle muscular dystrophy 2L (autosomal recessive)" Anoctamins 865 2004-04-07 2008-08-28 2008-08-28 2016-10-12 203859 ENSG00000171714 OTTHUMG00000166051 uc001mqi.3 AL833271 NM_213599 CCDS31444 Q75V66 "15067359|20096397|24692353" MGI:3576659 RGD:1564265 LRG_868|http://www.lrg-sequence.org/LRG/LRG_868 ANO5 608662 120137 +HGNC:25240 ANO6 anoctamin 6 protein-coding gene gene with protein product Approved 12q12 12q12 DKFZp313M0720 TMEM16F transmembrane protein 16F Anoctamins 865 2004-04-07 2008-08-28 2008-08-28 2016-10-12 196527 ENSG00000177119 OTTHUMG00000169564 uc001roo.4 AL832340 XM_113743 "CCDS31782|CCDS44865|CCDS44866|CCDS55819" Q4KMQ2 "15067359|24692353" MGI:2145890 RGD:1304765 LRG_877|http://www.lrg-sequence.org/LRG/LRG_877 ANO6 608663 258633 +HGNC:31677 ANO7 anoctamin 7 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "NGEP|PCANAP5L|IPCA-5" "PCANAP5|TMEM16G" transmembrane protein 16G Anoctamins 865 2004-10-06 2008-08-28 2008-08-28 2014-11-18 50636 ENSG00000146205 OTTHUMG00000151702 uc002wax.2 AY617079 NM_001001891 "CCDS33423|CCDS46563" Q6IWH7 "14981236|15375614|24692353" MGI:3052714 RGD:1302987 ANO7 605096 +HGNC:32248 ANO7L1 anoctamin 7 like 1 other unknown Approved 1p36.13 01p36.13 "TMEM16M|C1orf224|ANO7P1" "transmembrane protein 16M|chromosome 1 open reading frame 224|anoctamin 7 pseudogene 1" 2005-09-21 2016-07-19 2016-07-19 2016-07-19 101927546 ENSG00000237276 OTTHUMG00000002221 XM_017003078 PGOHUM00000243911 +HGNC:29329 ANO8 anoctamin 8 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "KIAA1623|TMEM16H" "KIAA1623|transmembrane protein 16H" Anoctamins 865 2004-02-12 2008-08-28 2008-08-28 2016-10-05 57719 ENSG00000074855 OTTHUMG00000182665 uc002ngf.2 AB046843 XM_050644 CCDS32949 Q9HCE9 "10997877|24692353" MGI:2687327 RGD:1563946 ANO8 610216 +HGNC:20679 ANO9 anoctamin 9 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 PIG5 "TP53I5|TMEM16J" "tumor protein p53 inducible protein 5|transmembrane protein 16J" Anoctamins 865 2003-03-20 2008-08-28 2008-08-28 2014-11-18 338440 ENSG00000185101 OTTHUMG00000165446 uc001lpi.3 U33271 NM_001012302 CCDS31326 A1A5B4 "9305847|24692353" MGI:1918595 RGD:1560565 ANO9 +HGNC:25519 ANO10 anoctamin 10 protein-coding gene gene with protein product Approved 3p22.1-p21.33 03p22.1-p21.33 "FLJ10375|MGC47890|SCAR10" TMEM16K transmembrane protein 16K Anoctamins 865 2005-09-21 2008-08-28 2008-08-28 2016-10-11 55129 ENSG00000160746 OTTHUMG00000133044 uc003cmv.4 AL832508 NM_018075 "CCDS2710|CCDS56247|CCDS56248|CCDS56249|CCDS56250" Q9NW15 24692353 MGI:2143103 RGD:1308260 ANO10 613726 284296 +HGNC:498 ANOP1 anophthalmos 1 (with mental retardation, without limb anomalies or dental or urogenital abnormalities) phenotype phenotype only Approved X X MCOPS4 1991-08-22 2011-02-10 289 1679229 301590 +HGNC:6211 ANOS1 anosmin 1 protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 "KALIG-1|WFDC19" "anosmin-1|WAP four-disulfide core domain 19|Adhesion molecule-like, X-linked|Kallmann syndrome interval gene 1" "KAL|ADMLX|KAL1" Kallmann syndrome 1 sequence "WAP four-disulfide core domain containing|Fibronectin type III domain containing" "361|555" 1986-01-01 2015-04-10 2015-04-10 2016-10-05 3730 ENSG00000011201 OTTHUMG00000021107 NM_000216 CCDS14130 P23352 11463336 RGD:2318138 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KAL1 300836 122751 I17.004 +HGNC:6214 ANOS2P anosmin 2, pseudogene pseudogene pseudogene Approved Yq11.221 Yq11.221 KAL-Y "ADMLY|KALP" Kallmann syndrome sequence pseudogene 1991-08-19 2015-04-10 2015-04-10 2016-10-05 3734 ENSG00000241859 OTTHUMG00000036365 X68743 NG_001153 "1303285|23721716" PGOHUM00000233962 +HGNC:13233 ANP32A acidic nuclear phosphoprotein 32 family member A protein-coding gene gene with protein product Approved 15q23 15q23 "LANP|PP32|I1PP2A|PHAPI|MAPM|mapmodulin" C15orf1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A ANP32 acidic nuclear phosphoproteins 27 2002-02-13 2015-11-05 2015-11-05 8125 ENSG00000140350 OTTHUMG00000154502 uc002arl.4 AF025684 NM_006305 CCDS45292 P39687 "8970164|9144194" MGI:108447 RGD:2116 ANP32A 600832 +HGNC:25672 ANP32A-IT1 ANP32A intronic transcript 1 non-coding RNA RNA, long non-coding Approved 15q23 15q23 "FLJ11722|HsT18971" "C15orf28|NCRNA00321" "chromosome 15 open reading frame 28|non-protein coding RNA 321|ANP32A intronic transcript 1 (non-protein coding)" 2004-06-29 2011-08-11 2015-02-25 2015-02-25 80035 AK021784 NR_026808 14702039 +HGNC:42949 ANP32AP1 acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudogene pseudogene Approved 15q14 15q14 acidic (leucine-rich) nuclear phosphoprotein 32 family, member A pseudogene 1 2011-09-08 2015-11-05 2015-11-05 723972 ENSG00000259516 OTTHUMG00000172321 NR_003144 PGOHUM00000262917 +HGNC:16677 ANP32B acidic nuclear phosphoprotein 32 family member B protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "SSP29|PHAPI2|APRIL" acidic protein rich in leucines acidic (leucine-rich) nuclear phosphoprotein 32 family, member B ANP32 acidic nuclear phosphoproteins 27 2002-02-13 2015-11-05 2016-10-05 10541 ENSG00000136938 OTTHUMG00000020338 uc004aya.4 Y07969 NM_006401 CCDS6732 Q92688 "9285060|9473664" MGI:1914878 RGD:621285 ANP32B +HGNC:24267 ANP32BP1 acidic nuclear phosphoprotein 32 family member B pseudogene 1 pseudogene pseudogene Approved 15q24.2 15q24.2 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 1 2010-06-17 2015-11-05 2015-11-05 646791 ENSG00000259790 OTTHUMG00000172674 NG_022900 PGOHUM00000246856 +HGNC:38552 ANP32BP2 acidic nuclear phosphoprotein 32 family member B pseudogene 2 pseudogene pseudogene Approved 22q13.31 22q13.31 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 2 2010-06-17 2015-11-05 2015-11-05 100130708 ENSG00000231801 OTTHUMG00000150461 NG_022880 PGOHUM00000246606 +HGNC:44089 ANP32BP3 acidic nuclear phosphoprotein 32 family member B pseudogene 3 pseudogene pseudogene Approved 15q25.1 15q25.1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B pseudogene 3 2012-06-20 2015-11-05 2015-11-05 100652899 ENSG00000259461 OTTHUMG00000172264 NG_032808 PGOHUM00000258880 +HGNC:16675 ANP32C acidic nuclear phosphoprotein 32 family member C other unknown Approved 4q32.3 04q32.3 PP32R1 acidic (leucine-rich) nuclear phosphoprotein 32 family, member C ANP32 acidic nuclear phosphoproteins 27 2002-02-13 2015-11-05 2015-11-05 23520 ENSG00000248546 OTTHUMG00000161205 AF008216 NM_012403 O43423 "10086381|10400610" ANP32C 606877 +HGNC:16676 ANP32D acidic nuclear phosphoprotein 32 family member D protein-coding gene gene with protein product Approved 12q13.11 12q13.11 PP32R2 pp32 related 2 acidic (leucine-rich) nuclear phosphoprotein 32 family, member D ANP32 acidic nuclear phosphoproteins 27 2002-02-13 2015-11-05 2016-10-05 23519 ENSG00000139223 OTTHUMG00000162681 uc010slt.3 U71084 NM_012404 CCDS31788 O95626 "10086381|10400610" ANP32D 606878 +HGNC:16673 ANP32E acidic nuclear phosphoprotein 32 family member E protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "LANPL|MGC5350|LANP-L" acidic (leucine-rich) nuclear phosphoprotein 32 family, member E ANP32 acidic nuclear phosphoproteins 27 2003-04-15 2015-11-05 2016-10-05 81611 ENSG00000143401 OTTHUMG00000012547 uc031uya.1 AK092672 NM_030920 "CCDS946|CCDS44214|CCDS44215|CCDS60245" Q9BTT0 12438741 MGI:1913721 RGD:1310611 ANP32E 609611 +HGNC:500 ANPEP alanyl aminopeptidase, membrane protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "LAP1|gp150|p150" "aminopeptidase N|aminopeptidase M|microsomal aminopeptidase|membrane alanyl aminopeptidase" "CD13|PEPN" alanyl (membrane) aminopeptidase "Aminopeptidases|CD molecules" "104|471" 1989-02-28 2016-01-06 2016-10-05 290 ENSG00000166825 OTTHUMG00000149814 uc002bop.5 M22324 XM_005254892 CCDS10356 P15144 "2428842|1977688" MGI:5000466 RGD:2991 ANPEP 151530 M01.001 objectId:1560 CD13 3.4.11.2 +HGNC:508 ANTP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-02-25 +HGNC:510 ANTP4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-02-25 +HGNC:21014 ANTXR1 anthrax toxin receptor 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "TEM8|FLJ21776|FLJ10601|ATR" "anthrax toxin receptor|tumor endothelial marker 8 precursor" 2003-08-27 2016-10-05 84168 ENSG00000169604 OTTHUMG00000129575 uc002sfg.4 AF421380 NM_032208 "CCDS1892|CCDS46313|CCDS46314" Q9H6X2 "10947988|11559528" MGI:1916788 RGD:1307144 ANTXR1 606410 353211 +HGNC:21732 ANTXR2 anthrax toxin receptor 2 protein-coding gene gene with protein product Approved 4q21.21 04q21.21 "CMG2|CMG-2|FLJ31074" capillary morphogenesis protein 2 2003-09-25 2016-10-05 118429 ENSG00000163297 OTTHUMG00000151982 uc003hly.5 AY040326 NM_058172 "CCDS47085|CCDS47086|CCDS68733" P58335 "11683410|12700348" MGI:1919164 RGD:1561294 ANTXR2 608041 121369 +HGNC:27277 ANTXRL anthrax toxin receptor-like protein-coding gene gene with protein product Approved 10q11.22 10q11.22 2005-06-03 2015-01-29 195977 ENSG00000274209 OTTHUMG00000188318 uc031wet.2 XM_113625 CCDS60524 A6NF34 MGI:1925726 RGD:1563190 ANTXRL +HGNC:45004 ANTXRLP1 anthrax toxin receptor-like pseudogene 1 pseudogene pseudogene Approved 10q11.22 10q11.22 2013-01-07 2015-01-29 100996567 ENSG00000263482 OTTHUMG00000188317 NR_103827 PGOHUM00000289841 +HGNC:533 ANXA1 annexin A1 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "ANX1|LPC1" "Annexins|Endogenous ligands" "404|542" 2001-06-22 2014-11-19 301 ENSG00000135046 OTTHUMG00000020016 uc004ajf.2 X05908 NM_000700 CCDS6645 P04083 2936963 MGI:96819 RGD:2118 ANXA1 151690 +HGNC:537 ANXA2 annexin A2 protein-coding gene gene with protein product Approved 15q22.2 15q22.2 LIP2 annexin II "ANX2|ANX2L4|CAL1H|LPC2D" Annexins 404 2001-06-22 2014-11-19 302 ENSG00000182718 OTTHUMG00000132763 uc002agn.4 D00017 NM_001002857 "CCDS10175|CCDS32256" P07355 7961821 MGI:88246 RGD:621170 ANXA2 151740 +HGNC:538 ANXA2P1 annexin A2 pseudogene 1 pseudogene pseudogene Approved 4q31.3 04q31.3 "LPC2A|ANX2P1|ANX2L1" 2001-06-22 2012-11-02 303 ENSG00000213406 OTTHUMG00000161554 M62896 NR_001562 "1611909|2174397" +HGNC:539 ANXA2P2 annexin A2 pseudogene 2 pseudogene pseudogene Approved 9p13.3 09p13.3 "ANX2P2|ANX2L2|LPC2B" 1986-01-01 2014-11-19 304 ENSG00000231991 OTTHUMG00000019778 M62898 NR_003573 A6NMY6 2969496 +HGNC:540 ANXA2P3 annexin A2 pseudogene 3 pseudogene pseudogene Approved 10q21.3 10q21.3 LIP2 "ANX2P3|ANX2L3|LPC2C" 2001-06-22 2016-08-15 305 ENSG00000216740 OTTHUMG00000018326 M62895 NR_001446 2174397 PGOHUM00000290182 +HGNC:33463 ANXA2R annexin A2 receptor protein-coding gene gene with protein product Approved 5p12 05p12 AXIIR C5orf39 chromosome 5 open reading frame 39 2007-05-02 2012-03-09 2012-03-09 2014-11-18 389289 ENSG00000177721 OTTHUMG00000162232 uc063dhv.1 BC067873 NM_001014279 CCDS34153 Q3ZCQ2 "16895901|18636554" 611296 +HGNC:541 ANXA3 annexin A3 protein-coding gene gene with protein product Approved 4q21.21 04q21.21 ANX3 Annexins 404 1990-11-07 2014-11-18 306 ENSG00000138772 OTTHUMG00000130198 uc003hld.4 M63310 NM_005139 CCDS3584 P12429 1830024 MGI:1201378 RGD:2119 ANXA3 106490 3.1.4.43 +HGNC:542 ANXA4 annexin A4 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 ANX4 Annexins 404 1992-02-13 2014-11-18 307 ENSG00000196975 OTTHUMG00000129649 uc002sfr.6 M82809 NM_001153 "CCDS1894|CCDS82459" P09525 1346776 MGI:88030 RGD:621171 ANXA4 106491 +HGNC:543 ANXA5 annexin A5 protein-coding gene gene with protein product Approved 4q27 04q27 "ENX2|ANX5" Annexins 404 1989-05-31 2014-11-18 308 ENSG00000164111 OTTHUMG00000133034 uc003idv.5 U05770 NM_001154 CCDS3720 P08758 2960376 MGI:106008 RGD:2120 ANXA5 131230 +HGNC:544 ANXA6 annexin A6 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 ANX6 Annexins 404 1990-02-01 2014-11-19 309 ENSG00000197043 OTTHUMG00000164179 uc003ltl.3 J03578 NM_001155 "CCDS47315|CCDS54941" P08133 3258820 MGI:88255 RGD:621172 ANXA6 114070 +HGNC:545 ANXA7 annexin A7 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 ANX7 Annexins 404 1994-07-20 2014-11-19 310 ENSG00000138279 OTTHUMG00000018463 uc001jua.3 J04543 NM_001156 "CCDS7325|CCDS7326" P20073 7515686 MGI:88031 RGD:621173 ANXA7 186360 +HGNC:546 ANXA8 annexin A8 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 ANX8 Annexins 404 1991-08-12 2015-09-11 653145 ENSG00000265190 OTTHUMG00000188209 uc001jev.5 M81844 NM_001040084 "CCDS73121|CCDS73122|CCDS73123" P13928 1364010 MGI:1201374 RGD:1307719 ANXA8 602396 +HGNC:23334 ANXA8L1 annexin A8-like 1 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "bA301J7.3|bA145E20.2" ANXA8L2 annexin A8-like 2 Annexins 404 2004-06-02 2015-09-11 728113 ENSG00000264230 OTTHUMG00000018131 uc031wew.2 NM_001098845 "CCDS73097|CCDS73098|CCDS73099" Q5VT79 MGI:1201374 ANXA8L1 +HGNC:547 ANXA9 annexin A9 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 ANX31 Annexins 404 1998-12-11 2016-10-05 8416 ENSG00000143412 OTTHUMG00000035063 uc001ewa.3 AJ009985 NM_003568 CCDS975 O76027 "9742942|9931420" MGI:1923711 RGD:1587550 ANXA9 603319 +HGNC:534 ANXA10 annexin A10 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 ANX14 Annexins 404 1999-09-17 2014-11-18 11199 ENSG00000109511 OTTHUMG00000161275 uc003irm.4 AJ238979 NM_007193 CCDS34096 Q9UJ72 10458909 MGI:1347090 RGD:1560956 ANXA10 608008 +HGNC:535 ANXA11 annexin A11 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 ANX11 Annexins 404 1994-05-17 2014-11-19 311 ENSG00000122359 OTTHUMG00000018604 uc001kbr.2 L19605 NM_145869 "CCDS7364|CCDS60576" P50995 "7508441|9503022" MGI:108481 RGD:1309911 ANXA11 602572 +HGNC:536 ANXA13 annexin A13 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 ANX13 Annexins 404 1998-05-15 2014-11-19 312 ENSG00000104537 OTTHUMG00000164987 uc003yqu.4 Z11502 NM_004306 "CCDS34939|CCDS47917" P27216 9503022 MGI:1917037 RGD:1307545 ANXA13 602573 +HGNC:548 AOAH acyloxyacyl hydrolase protein-coding gene gene with protein product Approved 7p14.2 07p14.2 acyloxyacyl hydrolase (neutrophil) 1992-09-16 2015-11-26 2015-11-26 313 ENSG00000136250 OTTHUMG00000023566 uc032zjw.2 BC025698 NM_001637 "CCDS5448|CCDS55102|CCDS75584" P28039 1883828 MGI:1350928 RGD:1560514 AOAH 102593 objectId:2873 3.1.1.77 +HGNC:41307 AOAH-IT1 AOAH intronic transcript 1 non-coding RNA RNA, long non-coding Approved 7p14.2 07p14.2 AOAH intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874264 ENSG00000230539 OTTHUMG00000154938 uc031swz.1 NR_046764 +HGNC:80 AOC1 amine oxidase, copper containing 1 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 DAO diamine oxidase ABP1 amiloride binding protein 1 (amine oxidase (copper-containing)) 1991-05-06 2013-06-19 2013-06-19 2015-08-28 26 ENSG00000002726 OTTHUMG00000158306 AK092514 NM_001091 "CCDS43679|CCDS64797" P19801 8182053 MGI:1923757 RGD:61296 104610 1.4.3.22 +HGNC:549 AOC2 amine oxidase, copper containing 2 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "RAO|DAO2" amine oxidase, copper containing 2 (retina-specific) 1996-10-26 2015-12-17 2016-10-05 314 ENSG00000131480 OTTHUMG00000180655 uc002ibu.5 AF081363 "NM_009590|NM_001158" "CCDS11443|CCDS45690" O75106 "9119395|9722954" MGI:2668431 RGD:727941 AOC2 602268 1.4.3.21 +HGNC:550 AOC3 amine oxidase, copper containing 3 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "VAP1|HPAO|VAP-1" vascular adhesion protein 1 1998-12-03 2013-05-08 2016-10-05 8639 ENSG00000131471 OTTHUMG00000180656 uc002ibv.6 AF067406 NM_003734 "CCDS11444|CCDS62198|CCDS74071" Q16853 "9653080|8972912" MGI:1306797 RGD:62058 AOC3 603735 objectId:2767 1.4.3.21 +HGNC:48869 AOC4P amine oxidase, copper containing 4, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 UPAT ubiquitin-like plant homeodomain (PHD) and really interesting new gene (RING) finger domain-containing protein 1 (UHRF1) protein associated transcript Transcribed pseudogenes with published function 859 2013-06-19 2016-01-29 90586 ENSG00000260105 OTTHUMG00000176596 NR_002773 "20013028|26160837" PGOHUM00000237400 +HGNC:553 AOX1 aldehyde oxidase 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "AO|AOH1" 1997-04-16 2016-10-05 316 ENSG00000138356 OTTHUMG00000154536 uc002uvx.4 AF017060 NM_001159 CCDS33360 Q06278 7570184 MGI:88035 RGD:620528 AOX1 602841 +HGNC:18450 AOX2P aldehyde oxidase 2 pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 AOH2 AOX2 aldehyde oxidase 2 2002-04-03 2008-05-22 2008-05-22 2016-10-05 344454 ENSG00000243478 OTTHUMG00000154538 AI187776 NR_001557 "11562361|23263164" +HGNC:19049 AOX3P aldehyde oxidase 3, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 AOH1 2013-09-26 2013-09-26 2016-01-22 107126360 ENSG00000244301 OTTHUMG00000154534 NG_046634 "10893244|23263164" MGI:1918974 +HGNC:28808 AP1AR adaptor related protein complex 1 associated regulatory protein protein-coding gene gene with protein product Approved 4q25 04q25 "PRO0971|2C18|gamma-BAR" gamma1-adaptin brefeldin A resistance C4orf16 "chromosome 4 open reading frame 16|adaptor-related protein complex 1 associated regulatory protein" 2004-09-15 2009-09-25 2015-12-17 2015-12-17 55435 ENSG00000138660 OTTHUMG00000132849 uc003iaj.6 AL136628 NM_018569 "CCDS3696|CCDS47125" Q63HQ0 15775984 MGI:2384822 RGD:1311435 AP1AR 610851 +HGNC:554 AP1B1 adaptor related protein complex 1 beta 1 subunit protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "BAM22|AP105A" "ADTB1|CLAPB2" "adaptor-related protein complex 1, beta 1 subunit|adaptor related protein complex 1 beta 1 subunit|adaptor-related protein complex 1 beta 1 subunit" 2000-09-01 2015-12-17 2016-04-25 162 ENSG00000100280 OTTHUMG00000151109 uc062cxt.1 L13939 NM_001127 "CCDS13855|CCDS13856|CCDS54515" Q10567 "7987321|8812422" MGI:1096368 RGD:2064 AP1B1 600157 +HGNC:297 AP1B1P1 adaptor related protein complex 1 beta 1 subunit pseudogene 1 pseudogene pseudogene Approved 22q12.3 22q12.3 dJ127L4.2 ADTB1L1 "adaptin, beta 1-like 1|adaptor-related protein complex 1, beta 1 subunit pseudogene 1|adaptor-related protein complex 1 beta 1 subunit pseudogene 1" 1999-10-29 2010-09-29 2015-12-17 2015-12-17 23782 ENSG00000234479 OTTHUMG00000030158 NG_002625 10591208 PGOHUM00000246567 +HGNC:298 AP1B1P2 adaptor related protein complex 1 beta 1 subunit pseudogene 2 pseudogene pseudogene Approved 22q12.3 22q12.3 dJ127L4.3 ADTB1L2 "adaptin, beta 1-like 2|adaptor-related protein complex 1, beta 1 subunit pseudogene 2|adaptor-related protein complex 1 beta 1 subunit pseudogene 2" 1999-10-29 2010-09-29 2015-12-17 2015-12-17 23781 ENSG00000232707 OTTHUMG00000030159 NG_002624 10591208 +HGNC:555 AP1G1 adaptor related protein complex 1 gamma 1 subunit protein-coding gene gene with protein product Approved 16q22.2 16q22.2 gamma1-adaptin "CLAPG1|ADTG" "adaptor-related protein complex 1, gamma 1 subunit|adaptor-related protein complex 1 gamma 1 subunit" 2000-09-01 2015-12-17 2016-10-04 164 ENSG00000166747 OTTHUMG00000176871 uc010cgg.4 Y12226 NM_001128 "CCDS32480|CCDS45522" O43747 "9653655|9733768" MGI:101919 RGD:619785 AP1G1 603533 +HGNC:556 AP1G2 adaptor related protein complex 1 gamma 2 subunit protein-coding gene gene with protein product Approved 14q11.2 14q11.2 G2AD "adaptor-related protein complex 1, gamma 2 subunit|adaptor-related protein complex 1 gamma 2 subunit" 2000-09-01 2015-12-17 2015-12-17 8906 ENSG00000213983 OTTHUMG00000028760 uc010tnp.2 AB015318 NM_003917 CCDS9602 O75843 "9733768|9762922" MGI:1328307 RGD:2324507 AP1G2 603534 +HGNC:13667 AP1M1 adaptor related protein complex 1 mu 1 subunit protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "AP47|CLAPM2" "adaptor-related protein complex 1, mu 1 subunit|adaptor-related protein complex 1 mu 1 subunit" 2000-09-28 2015-12-17 2015-12-17 8907 ENSG00000072958 OTTHUMG00000182323 uc002ndu.3 NM_032493 "CCDS12342|CCDS46008" Q9BXS5 "9653655|17988225" MGI:102776 RGD:1307653 AP1M1 603535 +HGNC:558 AP1M2 adaptor related protein complex 1 mu 2 subunit protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "HSMU1B|mu2|AP1-mu2" "adaptor-related protein complex 1, mu 2 subunit|adaptor-related protein complex 1 mu 2 subunit" 2000-09-01 2015-12-17 2015-12-17 10053 ENSG00000129354 OTTHUMG00000180584 uc002mpc.4 AF020797 NM_005498 "CCDS45964|CCDS77234" Q9Y6Q5 10338135 MGI:1336974 RGD:1561490 AP1M2 607309 +HGNC:559 AP1S1 adaptor related protein complex 1 sigma 1 subunit protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "AP19|SIGMA1A|WUGSC:H_DJ0747G18.2" "clathrin-associated/assembly/adaptor protein, small 1 (19kD)|clathrin coat assembly protein AP19|sigma1A subunit of AP-1 clathrin adaptor complex|AP-1 complex subunit sigma-1A|sigma1A-adaptin|golgi adaptor HA1/AP1 adaptin sigma-1A subunit|clathrin assembly protein complex 1 sigma-1A small chain|HA1 19 kDa subunit" "CLAPS1|EKV3" "erythrokeratodermia variabilis 3 (Kamouraska type)|adaptor-related protein complex 1, sigma 1 subunit|adaptor-related protein complex 1 sigma 1 subunit" 2000-09-01 2015-12-17 2015-12-17 1174 ENSG00000106367 OTTHUMG00000157103 uc003uxv.5 AB015319 NM_001283 CCDS47669 P61966 "9653655|9733768|19057675" MGI:1098244 RGD:1305911 AP1S1 603531 178120 +HGNC:560 AP1S2 adaptor related protein complex 1 sigma 2 subunit protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 SIGMA1B "MRX59|MRXS5|PGS" "mental retardation, X-linked 59|mental retardation, X-linked, syndromic 5|Pettigrew X-linked mental retardation syndrome|adaptor-related protein complex 1, sigma 2 subunit|adaptor-related protein complex 1 sigma 2 subunit" X-linked mental retardation 103 2000-09-01 2015-12-17 2016-10-05 8905 ENSG00000182287 OTTHUMG00000021186 uc004cxi.5 AB015320 NM_003916 "CCDS14173|CCDS75958" P56377 "9733768|17186471|23756445" MGI:1889383 RGD:1561862 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AP1S2 AP1S2 300629 137988 +HGNC:50752 AP1S2P1 adaptor related protein complex 1 sigma 2 subunit pseudogene 1 pseudogene pseudogene Approved 7q21.3 07q21.3 "adaptor-related protein complex 1, sigma 2 subunit pseudogene 1|adaptor-related protein complex 1 sigma 2 subunit pseudogene 1" 2014-06-16 2015-12-17 2015-12-17 106480305 ENSG00000226046 OTTHUMG00000154127 NG_044301 PGOHUM00000233484 +HGNC:18971 AP1S3 adaptor related protein complex 1 sigma 3 subunit protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "adaptor-related protein complex 1, sigma 3 subunit|adaptor-related protein complex 1 sigma 3 subunit" 2002-12-17 2015-12-17 2016-10-05 130340 ENSG00000152056 OTTHUMG00000133165 uc002vnn.4 AF393369 XM_011510600 CCDS42827 Q96PC3 MGI:1891304 RGD:1311772 AP1S3 615781 402648 +HGNC:561 AP2A1 adaptor related protein complex 2 alpha 1 subunit protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "CLAPA1|ADTAA" adaptor-related protein complex 2, alpha 1 subunit 2000-09-01 2016-01-06 2016-01-06 160 ENSG00000196961 OTTHUMG00000183253 uc002ppn.4 AA993745 XM_011526556 "CCDS46148|CCDS46149" O95782 2564002 MGI:101921 RGD:1306254 AP2A1 601026 +HGNC:562 AP2A2 adaptor related protein complex 2 alpha 2 subunit protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "DKFZP564D1864|HYPJ|KIAA0899|HIP9" "alpha-adaptin C; Huntingtin interacting protein J|adaptin, alpha B|clathrin-associated/assembly/adaptor protein, large, alpha 2" "CLAPA2|ADTAB" adaptor-related protein complex 2, alpha 2 subunit 2000-09-01 2016-01-06 2016-01-06 161 ENSG00000183020 OTTHUMG00000165627 uc001lss.4 AB020706 NM_012305 "CCDS44512|CCDS73234" O94973 "9700202|2564002" MGI:101920 RGD:71015 AP2A2 607242 +HGNC:563 AP2B1 adaptor related protein complex 2 beta 1 subunit protein-coding gene gene with protein product Approved 17q12 17q12 "ADTB2|CLAPB1" adaptor-related protein complex 2, beta 1 subunit 2000-09-01 2016-01-06 2016-01-06 163 ENSG00000006125 OTTHUMG00000179924 uc002hjq.4 M34175 XM_011524449 "CCDS32621|CCDS32622" P63010 "8262066|8595912" MGI:1919020 RGD:71048 AP2B1 601025 +HGNC:564 AP2M1 adaptor related protein complex 2 mu 1 subunit protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "AP50|mu2" "clathrin-associated/assembly/adaptor protein, medium 1|plasma membrane adaptor AP-2 50kDA protein|clathrin coat adaptor protein AP50|clathrin adaptor complex AP2, mu subunit|HA2 50 kDA subunit|clathrin assembly protein complex 2 medium chain|AP-2 mu 2 chain" CLAPM1 adaptor-related protein complex 2, mu 1 subunit 2000-09-01 2016-01-06 2016-10-05 1173 ENSG00000161203 OTTHUMG00000156822 uc062qrr.1 U36188 NM_004068 "CCDS43177|CCDS43178|CCDS82880" Q96CW1 8595912 MGI:1298405 RGD:620135 AP2M1 601024 +HGNC:565 AP2S1 adaptor related protein complex 2 sigma 1 subunit protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "FBHOk|FBH3" "CLAPS2|HHC3" "hypocalciuric hypercalcemia 3 (Oklahoma type)|adaptor-related protein complex 2, sigma 1 subunit" 2000-09-01 2015-12-17 2016-01-06 1175 ENSG00000042753 OTTHUMG00000183437 uc002pft.2 AJ010148 XM_011526423 "CCDS12693|CCDS33062|CCDS77323|CCDS77322|CCDS77321" P53680 "9040778|9767099|23222959" MGI:2141861 RGD:620188 AP2S1 602242 320542 +HGNC:566 AP3B1 adaptor related protein complex 3 beta 1 subunit protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "ADTB3A|HPS2" adaptor-related protein complex 3, beta 1 subunit 2000-09-01 2016-01-06 2016-10-12 8546 ENSG00000132842 OTTHUMG00000106919 uc003kfj.5 U81504 XM_005248618 "CCDS4041|CCDS64186" O00203 "9182526|9151686" MGI:1333879 RGD:1310256 "Albinism Database|http://albinismdb.med.umn.edu/|AP3B1base: Mutation registry for Hermansky-Pudlak syndrome 2|http://structure.bmc.lu.se/idbase/AP3B1base/|Mutations of the Adaptin b3a Gene|http://www.retina-international.org/files/sci-news/adtb3mut.htm|LRG_170|http://www.lrg-sequence.org/LRG/LRG_170" AP3B1 603401 121374 +HGNC:567 AP3B2 adaptor related protein complex 3 beta 2 subunit protein-coding gene gene with protein product Approved 15q25.2 15q25.2 NAPTB adaptor-related protein complex 3, beta 2 subunit 2000-09-01 2016-01-06 2016-10-05 8120 ENSG00000103723 OTTHUMG00000168009 uc010uoh.4 U37673 XM_017022640 "CCDS45331|CCDS61736|CCDS61737" Q13367 "7671305|1851215" MGI:1100869 RGD:1308950 AP3B2 602166 +HGNC:568 AP3D1 adaptor related protein complex 3 delta 1 subunit protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ADTD adaptor-related protein complex 3, delta 1 subunit 2000-09-01 2016-01-06 2016-01-06 8943 ENSG00000065000 OTTHUMG00000180354 uc002luz.4 U91930 XM_006722932 "CCDS42459|CCDS58638" O14617 "9151686|9303295" MGI:107734 RGD:1308659 AP3D1 607246 +HGNC:569 AP3M1 adaptor related protein complex 3 mu 1 subunit protein-coding gene gene with protein product Approved 10q22.2 10q22.2 adaptor-related protein complex 3, mu 1 subunit 2000-09-01 2016-01-06 2016-01-06 26985 ENSG00000185009 OTTHUMG00000018497 uc001jwh.4 AF092092 XR_001747091 CCDS7342 Q9Y2T2 10024875 MGI:1929212 RGD:620417 AP3M1 610366 +HGNC:570 AP3M2 adaptor related protein complex 3 mu 2 subunit protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "CLA20|AP47B" adaptor-related protein complex 3, mu 2 subunit 2000-09-01 2016-01-06 2016-10-05 10947 ENSG00000070718 OTTHUMG00000164060 uc064mjc.1 D38293 XM_017012977 CCDS6125 P53677 7601449 MGI:1929214 RGD:70969 AP3M2 610469 +HGNC:2013 AP3S1 adaptor related protein complex 3 sigma 1 subunit protein-coding gene gene with protein product Approved 5q22.3-q23.1 05q22.3-q23.1 CLAPS3 adaptor-related protein complex 3, sigma 1 subunit 1996-03-12 2016-01-06 2016-10-11 1176 ENSG00000177879 OTTHUMG00000128887 uc003krl.4 D63643 XM_011543136 "CCDS4123|CCDS83021" Q92572 "8697810|9118953" MGI:1337062 RGD:1311115 AP3S1 601507 +HGNC:571 AP3S2 adaptor related protein complex 3 sigma 2 subunit protein-coding gene gene with protein product Approved 15q26.1 15q26.1 sigma3b adaptor-related protein complex 3, sigma 2 subunit 2000-09-01 2016-01-06 2016-01-06 10239 ENSG00000157823 OTTHUMG00000149811 uc002boq.5 X99459 NM_005829 CCDS10357 P59780 9118953 MGI:1337060 RGD:1586888 AP3S2 602416 +HGNC:572 AP4B1 adaptor related protein complex 4 beta 1 subunit protein-coding gene gene with protein product Approved 1p13.2 01p13.2 BETA-4 "beta 4 subunit of AP-4|AP-4 complex subunit beta-1" SPG47 "spastic paraplegia 47|adaptor-related protein complex 4, beta 1 subunit" 2000-09-01 2016-01-12 2016-01-19 10717 ENSG00000134262 OTTHUMG00000011943 uc001eed.4 AF092094 NM_006594 "CCDS865|CCDS76192" Q9Y6B7 10066790 MGI:1337130 RGD:1310529 AP4B1 607245 270048 +HGNC:44114 AP4B1-AS1 AP4B1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p13.2 01p13.2 AP4B1 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100287722 ENSG00000226167 OTTHUMG00000011941 uc001edv.3 AK123199 NR_037864 +HGNC:573 AP4E1 adaptor related protein complex 4 epsilon 1 subunit protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "AP-4-EPSILON|SPG51" adaptor-related protein complex 4, epsilon 1 subunit 2000-09-01 2016-01-12 2016-10-12 23431 ENSG00000081014 OTTHUMG00000172458 uc001zyx.3 AB030653 XM_006720447 "CCDS32240|CCDS58362" Q9UPM8 "10436028|21620353" MGI:1336993 RGD:1562199 LRG_732|http://www.lrg-sequence.org/LRG/LRG_732 AP4E1 607244 270045 +HGNC:574 AP4M1 adaptor related protein complex 4 mu 1 subunit protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MU-ARP2|MU-4|SPG50" "mu-adaptin-related protein-2|mu subunit of AP-4|AP-4 adapter complex mu subunit|adaptor-related protein complex AP-4 mu4 subunit" adaptor-related protein complex 4, mu 1 subunit 2000-09-01 2016-01-12 2016-01-12 9179 ENSG00000221838 OTTHUMG00000154722 uc003utd.4 Y08387 NM_004722 CCDS5685 O00189 "9013859|10066790|21620353" MGI:1337063 RGD:1310233 AP4M1 602296 212921 +HGNC:575 AP4S1 adaptor related protein complex 4 sigma 1 subunit protein-coding gene gene with protein product Approved 14q12 14q12 "CLA20|AP47B|SPG52" adaptor-related protein complex 4, sigma 1 subunit 2000-09-01 2016-01-12 2016-01-12 11154 ENSG00000100478 OTTHUMG00000140202 uc021rry.2 AB030654 XM_011536371 "CCDS9642|CCDS45093|CCDS58309|CCDS58310" Q9Y587 "10436028|21620353" MGI:1337065 RGD:1311990 AP4S1 607243 270052 +HGNC:25104 AP5B1 adaptor related protein complex 5 beta 1 subunit protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "PP1030|AP-5|DKFZp761E198" adaptor-related protein complex 5, beta 1 subunit 2012-02-27 2016-01-29 2016-01-29 91056 ENSG00000254470 OTTHUMG00000166593 uc031qbm.2 JQ313135 NM_138368 CCDS58146 Q2VPB7 22022230 MGI:2685808 RGD:1562657 AP5B1 614367 +HGNC:20192 AP5M1 adaptor related protein complex 5 mu 1 subunit protein-coding gene gene with protein product Approved 14q22.3 14q22.3 "FLJ10813|MuD|mu5" Mu-2 related death-inducing gene "C14orf108|MUDENG" "chromosome 14 open reading frame 108|MU-2/AP1M2 domain containing, death-inducing|adaptor-related protein complex 5, mu 1 subunit" 2002-12-20 2012-03-20 2016-01-29 2016-10-05 55745 ENSG00000053770 OTTHUMG00000140318 uc001xcv.4 AF094583 NM_018229 CCDS9729 Q9H0R1 18395520 MGI:1921635 RGD:1308087 614368 +HGNC:15875 AP5S1 adaptor related protein complex 5 sigma 1 subunit protein-coding gene gene with protein product Approved 20p13 20p13 FLJ11168 C20orf29 "chromosome 20 open reading frame 29|adaptor-related protein complex 5, sigma 1 subunit" 2001-06-21 2012-02-27 2016-01-29 2016-01-29 55317 ENSG00000125843 OTTHUMG00000031760 uc002wju.3 AK002030 NM_018347 CCDS13070 Q9NUS5 "11780052|22022230" MGI:1916846 RGD:1561852 614824 +HGNC:22197 AP5Z1 adaptor related protein complex 5 zeta 1 subunit protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "SPG48|zeta" KIAA0415 "KIAA0415|adaptor-related protein complex 5, zeta 1 subunit" 2007-07-23 2012-03-20 2016-01-29 2016-01-29 9907 ENSG00000242802 OTTHUMG00000151754 uc003sne.4 AB007875 XM_017012864 CCDS47528 O43299 "20613862|22022230" MGI:1924908 RGD:1593125 613653 311047 +HGNC:576 APAF1 apoptotic peptidase activating factor 1 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "CED4|APAF-1" "apoptotic protease activating factor|apoptotic peptidase activating factor" "WD repeat domain containing|Caspase recruitment domain containing|Apoptosome" "362|959|1341" 1998-01-20 2006-10-23 2016-10-04 317 ENSG00000120868 OTTHUMG00000170214 uc001tfz.4 AF013263 NM_181861.1 "CCDS9069|CCDS9070|CCDS9071|CCDS55862|CCDS55863" O14727 "9267021|10702682" MGI:1306796 RGD:620575 APAF1 602233 +HGNC:578 APBA1 amyloid beta precursor protein binding family A member 1 protein-coding gene gene with protein product Approved 9q21.12 09q21.12 "D9S411E|X11" MINT1 amyloid beta (A4) precursor protein-binding, family A, member 1 PDZ domain containing 1220 1997-06-25 2016-01-21 2016-01-21 320 ENSG00000107282 OTTHUMG00000019984 uc004ahh.3 AF029106 NM_001163 CCDS6630 Q02410 "7678331|7719031" MGI:1860297 RGD:620844 APBA1 602414 +HGNC:579 APBA2 amyloid beta precursor protein binding family A member 2 protein-coding gene gene with protein product Approved 15q13.1 15q13.1 "D15S1518E|LIN-10|MGC:14091|HsT16821" "X11L|MINT2" "X11-like|amyloid beta (A4) precursor protein-binding, family A, member 2 (X11-like)|amyloid beta (A4) precursor protein-binding, family A, member 2" PDZ domain containing 1220 1997-06-25 2016-01-21 2016-10-05 321 ENSG00000034053 OTTHUMG00000129255 uc059gzq.1 AB014719 NM_005503 "CCDS10022|CCDS45197" Q99767 8955346 MGI:1261791 RGD:620845 APBA2 602712 +HGNC:580 APBA3 amyloid beta precursor protein binding family A member 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "X11L2|mint3" X11-like 2 amyloid beta (A4) precursor protein-binding, family A, member 3 PDZ domain containing 1220 1999-04-22 2016-01-21 2016-01-21 9546 ENSG00000011132 OTTHUMG00000180915 uc002lyp.2 AB021638 XM_006722950 CCDS12110 O96018 10049767 MGI:1888527 RGD:620846 APBA3 604262 +HGNC:581 APBB1 amyloid beta precursor protein binding family B member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 Fe65 RIR amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) 1997-03-27 2016-01-21 2016-10-04 322 ENSG00000166313 OTTHUMG00000165454 uc001mdc.3 L77864 NM_001164 "CCDS31410|CCDS58114|CCDS66015|CCDS66016|CCDS66017|CCDS66018" O00213 "8955346|8894693" MGI:107765 RGD:2122 APBB1 602709 +HGNC:17379 APBB1IP amyloid beta precursor protein binding family B member 1 interacting protein protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "INAG1|RIAM" Rap1-GTP-interacting adaptor molecule amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein Pleckstrin homology domain containing 682 2003-03-07 2016-01-21 2016-01-21 54518 ENSG00000077420 OTTHUMG00000017841 uc001iss.4 AB085852 NM_019043 CCDS31167 Q7Z5R6 9407065 MGI:1861354 RGD:1304795 APBB1IP 609036 +HGNC:582 APBB2 amyloid beta precursor protein binding family B member 2 protein-coding gene gene with protein product Approved 4p14-p13 04p14-p13 "FE65L|FE65L1|MGC35575" Fe65-like amyloid beta (A4) precursor protein-binding, family B, member 2 1997-06-25 2016-01-21 2016-10-11 323 ENSG00000163697 OTTHUMG00000160416 uc003gvm.4 U62325 NM_173075 "CCDS43224|CCDS54760|CCDS54761|CCDS54762|CCDS82918" Q92870 "8955346|9585438" MGI:108405 RGD:1562438 APBB2 602710 +HGNC:20708 APBB3 amyloid beta precursor protein binding family B member 3 other unknown Approved 5q31.3 05q31.3 FE65L2 amyloid beta (A4) precursor protein-binding, family B, member 3 2003-03-21 2016-01-21 2016-10-05 10307 ENSG00000113108 OTTHUMG00000129504 uc063hvr.1 AB018247 NM_006051 "CCDS4227|CCDS4228|CCDS4229|CCDS47279" O95704 9407065 MGI:108404 RGD:620853 APBB3 602711 +HGNC:583 APC APC, WNT signaling pathway regulator protein-coding gene gene with protein product Approved 5q22.2 05q22.2 "DP2|DP3|DP2.5|PPP1R46" protein phosphatase 1, regulatory subunit 46 "adenomatosis polyposis coli|adenomatous polyposis coli" "Armadillo repeat containing|Protein phosphatase 1 regulatory subunits" "409|694" 1986-01-01 2016-06-23 2016-10-12 324 ENSG00000134982 OTTHUMG00000128806 uc003kpy.5 M74088 NM_000038 CCDS4107 P25054 1651563 MGI:88039 RGD:2123 "Adenomatous polyposis coli mutation database|http://p53.free.fr/|UMD Locus Specific Databases|http://www.umd.be/|Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=APC|APC database at LOVD-China|http://genomed.org/LOVD/HNPCC/home.php?select_db=APC|LOVD - Leiden Open Variation Database|http://proteomics.bio21.unimelb.edu.au/lovd/genes/APC|LRG_130|http://www.lrg-sequence.org/LRG/LRG_130" APC 611731 123393 +HGNC:24036 APC2 APC2, WNT signaling pathway regulator protein-coding gene gene with protein product Approved 19p13.3 19p13.3 APCL adenomatous polyposis coli like adenomatosis polyposis coli 2 Armadillo repeat containing 409 2004-03-18 2016-06-28 2016-06-28 10297 ENSG00000115266 OTTHUMG00000180059 uc002lsr.1 NM_005883 CCDS12068 O95996 "9823329|10021369" MGI:1346052 RGD:1308256 APC2 612034 431562 +HGNC:15718 APCDD1 APC down-regulated 1 protein-coding gene gene with protein product Approved 18p11.22 18p11.22 B7323 adenomatosis polyposis coli down-regulated 1 2001-06-21 2016-06-28 2016-10-05 147495 ENSG00000154856 OTTHUMG00000131635 uc002kom.5 AB056722 NM_153000 CCDS11849 Q8J025 12384519 MGI:3513977 RGD:1589962 APCDD1 607479 229796 +HGNC:26892 APCDD1L APC down-regulated 1 like protein-coding gene gene with protein product Approved 20q13.32 20q13.32 FLJ90166 adenomatosis polyposis coli down-regulated 1-like 2006-07-07 2016-06-28 2016-06-28 164284 ENSG00000198768 OTTHUMG00000032845 uc002xze.2 AK074647 NM_153360 CCDS13467 Q8NCL9 RGD:1562045 APCDD1L +HGNC:27152 APCDD1L-AS1 APCDD1L antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 20q13.32 20q13.32 "APCDD1L antisense RNA 1 (non-protein coding)|APCDD1L antisense RNA 1" 2012-08-09 2012-10-17 2014-11-18 149773 ENSG00000231290 OTTHUMG00000032847 uc002xzg.3 "AI077602|AK054637" NR_034147 +HGNC:584 APCS amyloid P component, serum protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "SAP|PTX2|MGC88159" "pentraxin-related|9.5S alpha-1-glycoprotein|pentraxin-2" Short pentraxins 1143 2001-06-22 2016-10-05 325 ENSG00000132703 OTTHUMG00000022741 uc001ftv.4 NM_001639 CCDS1186 P02743 2987268 MGI:98229 RGD:68322 APCS 104770 objectId:2839 +HGNC:586 APEH acylaminoacyl-peptide hydrolase protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "acylaminoacyl-peptidase|acylamino-acid-releasing enzyme" "D3F15S2|DNF15S2|D3S48E" N-acylaminoacyl-peptide hydrolase 1991-07-24 2013-05-29 2016-10-05 327 ENSG00000164062 OTTHUMG00000156882 uc003cxf.4 D38441 XM_011533658 CCDS2801 P13798 2392324 MGI:88041 RGD:2125 APEH 102645 S09.004 objectId:2328 3.4.19.1 +HGNC:48925 APELA apelin receptor early endogenous ligand protein-coding gene gene with protein product Approved 4q32.3 04q32.3 "Ende|ELA|tdl" "ELABELA|toddler" Endogenous ligands 542 2014-01-24 2014-01-24 100506013 ENSG00000248329 OTTHUMG00000161255 XM_017007623 CCDS77980 P0DMC3 "20153842|24316148|24407481" MGI:3642370 615594 +HGNC:587 APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "APE|REF1|HAP1|APX|APEN|REF-1|APE-1" APEX "APEX nuclease (multifunctional DNA repair enzyme)|APEX nuclease (multifunctional DNA repair enzyme) 1" 1997-05-22 2002-09-13 2016-03-08 2016-03-08 328 ENSG00000100823 OTTHUMG00000029544 uc001vxi.4 X59764 NM_001641 CCDS9550 P27695 MGI:88042 RGD:2126 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ APEX1 107748 4.2.99.18 +HGNC:17889 APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "APEXL2|APE2|XTH2|ZGRF2" zinc finger, GRF-type containing 2 APEX nuclease (apurinic/apyrimidinic endonuclease) 2 Zinc fingers GRF-type 135 2002-07-22 2016-03-08 2016-10-05 27301 ENSG00000169188 OTTHUMG00000021642 uc004dtz.5 AB021260 NM_014481 CCDS14365 Q9UBZ4 11376153 MGI:1924872 RGD:1565983 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=APEX2 APEX2 300773 4.2.99.18 +HGNC:29509 APH1A aph-1 homolog A, gamma-secretase subunit protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "APH-1A|CGI-78" "anterior pharynx defective 1 homolog A (C. elegans)|APH1A gamma secretase subunit" 2005-02-08 2016-05-16 2016-05-16 51107 ENSG00000117362 OTTHUMG00000012545 uc001etz.3 AF151835 NM_016022 "CCDS41390|CCDS41391|CCDS58025" Q96BI3 "10810093|12110170" MGI:2385110 RGD:1311546 APH1A 607629 +HGNC:24080 APH1B aph-1 homolog B, gamma-secretase subunit protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "PSFL|APH-1B|DKFZp564D0372" "anterior pharynx defective 1 homolog B (C. elegans)|APH1B gamma secretase subunit" 2005-02-08 2016-05-16 2016-05-16 83464 ENSG00000138613 OTTHUMG00000132863 uc002ama.4 AY358698 NM_031301 "CCDS10184|CCDS45276" Q8WW43 "12110170|11230166" MGI:3522097 RGD:1562468 APH1B 607630 +HGNC:594 API5 apoptosis inhibitor 5 protein-coding gene gene with protein product Approved 11p12 11p12 "AAC-11|API5L1|AAC11" "API5-like 1|fibroblast growth factor 2-interacting factor 2|migration-inducing protein MIG8" 1998-10-06 2014-11-18 8539 ENSG00000166181 OTTHUMG00000166395 uc001mxf.3 U83857 NM_006595 "CCDS31465|CCDS44572|CCDS44573" Q9BZZ5 9307294 MGI:1888993 RGD:1309772 API5 609774 +HGNC:595 API5P1 apoptosis inhibitor 5 pseudogene 1 pseudogene pseudogene Approved Xq23 Xq23 API5L1 "API5-like 1|API5 pseudogene 1" 1999-07-14 2010-09-30 2015-04-02 2016-10-05 642812 ENSG00000234558 OTTHUMG00000022242 NG_009200 10373420 PGOHUM00000241507 +HGNC:39070 API5P2 apoptosis inhibitor 5 pseudogene 2 pseudogene pseudogene Approved 2q31.2 02q31.2 API5 pseudogene 2 2010-09-30 2015-04-02 2015-04-02 728664 ENSG00000213962 OTTHUMG00000154194 NG_009199 PGOHUM00000240441 +HGNC:17581 APIP APAF1 interacting protein protein-coding gene gene with protein product Approved 11p13 11p13 "CGI-29|Mmrp19|APIP2" methylthioribulose-1-phosphate dehydratase 2005-11-10 2014-11-19 51074 ENSG00000149089 OTTHUMG00000166455 uc001mvs.4 AF132963 NM_015957 CCDS7895 Q96GX9 "10810093|15262985|24367089" MGI:1926788 RGD:1564562 APIP 612491 4.2.1.109 +HGNC:38843 APITD1-CORT APITD1-CORT readthrough other readthrough Approved 1p36.22 01p36.22 2011-02-21 2014-11-19 100526739 ENSG00000251503 OTTHUMG00000162436 uc001arf.4 NM_198544.3 "CCDS53266|CCDS72699" MGI:1917178 +HGNC:28724 APLF aprataxin and PNKP like factor protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "MGC47799|Xip1|ZCCHH1" "XRCC1-interacting protein 1|zinc finger, CX5CX6HX5H motif containing 1" C2orf13 chromosome 2 open reading frame 13 Zinc fingers 26 2004-01-09 2008-10-01 2008-10-01 2016-10-05 200558 ENSG00000169621 OTTHUMG00000129566 uc002sep.4 BC030711 NM_173545 CCDS1888 Q8IW19 "18474613|18077224|17353262" MGI:1919353 RGD:1565557 APLF 611035 +HGNC:16665 APLN apelin protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "apelin|XNPEP2" apelin, AGTRL1 ligand Endogenous ligands 542 2004-06-01 2008-04-21 2016-10-05 8862 ENSG00000171388 OTTHUMG00000022371 uc004eus.4 AF179680 NM_017413 CCDS48165 Q9ULZ1 "9792798|10525157" MGI:1353624 RGD:620672 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=APLN APLN 300297 +HGNC:339 APLNR apelin receptor protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "FLJ90771|APJ|APJR" APJ (apelin) receptor AGTRL1 angiotensin II receptor-like 1 Peptide receptors 220 1994-07-07 2008-05-12 2008-05-12 2014-11-19 187 ENSG00000134817 OTTHUMG00000167021 uc058bkm.1 U03642 NM_005161 CCDS7950 P35414 "8294032|14622440" MGI:1346086 RGD:621645 APLNR 600052 objectId:36 +HGNC:597 APLP1 amyloid beta precursor like protein 1 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 APLP "amyloid-like protein 1|amyloid precursor-like protein 1" amyloid beta (A4) precursor-like protein 1 1992-06-18 2016-01-21 2016-01-21 333 ENSG00000105290 OTTHUMG00000180692 uc002ocf.4 U48437 NM_001024807 CCDS32997 P51693 8432545 MGI:88046 RGD:69257 APLP1 104775 +HGNC:598 APLP2 amyloid beta precursor like protein 2 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 APPH APPL2 amyloid beta (A4) precursor-like protein 2 1993-06-23 2016-01-21 2016-10-05 334 ENSG00000084234 OTTHUMG00000165767 uc010sby.3 L19597 NM_001642 "CCDS8486|CCDS44773|CCDS44774|CCDS44775|CCDS58196" Q06481 10702673 MGI:88047 RGD:2128 APLP2 104776 I02.016 +HGNC:13238 APMAP adipocyte plasma membrane associated protein protein-coding gene gene with protein product Approved 20p11.21 20p11.21 BSCv C20orf3 chromosome 20 open reading frame 3 2000-09-19 2012-07-20 2012-07-20 2016-10-05 57136 ENSG00000101474 OTTHUMG00000032107 uc002wty.4 AB033767 NM_020531 CCDS13166 Q9HDC9 "10945474|11583587|20552250" MGI:1919131 RGD:1308874 APMAP 615884 +HGNC:600 APOA1 apolipoprotein A1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 apolipoprotein A-I Apolipoproteins 405 2001-06-22 2016-04-26 2016-10-12 335 ENSG00000118137 OTTHUMG00000046112 uc001ppv.2 X02162 NM_000039 CCDS8378 P02647 MGI:88049 RGD:2130 LRG_767|http://www.lrg-sequence.org/LRG/LRG_767 APOA1 107680 121380 +HGNC:40079 APOA1-AS APOA1 antisense RNA non-coding RNA RNA, long non-coding Approved 11q23.3 11q23.3 Long non-coding RNAs 788 2014-01-04 2014-11-19 104326055 ENSG00000235910 OTTHUMG00000150649 DA327409 NR_126362 24388749 +HGNC:601 APOA2 apolipoprotein A2 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 apolipoprotein A-II Apolipoproteins 405 2001-06-22 2016-04-26 2016-04-26 336 ENSG00000158874 OTTHUMG00000034346 uc001fzc.2 NM_001643 CCDS1226 P02652 2415515 MGI:88050 RGD:2131 APOA2 107670 188814 +HGNC:602 APOA4 apolipoprotein A4 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 apolipoprotein A-IV Apolipoproteins 405 2001-06-22 2016-04-26 2016-04-26 337 ENSG00000110244 OTTHUMG00000046110 uc001pps.2 NM_000482 CCDS31681 P06727 MGI:88051 RGD:2132 APOA4 107690 +HGNC:17288 APOA5 apolipoprotein A5 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "RAP3|APOA-V" apolipoprotein A-V Apolipoproteins 405 2001-12-11 2016-04-26 2016-10-05 116519 ENSG00000110243 OTTHUMG00000046116 uc001ppr.4 AF202889 XM_017017169 CCDS8376 Q6Q788 "11588264|11577099" MGI:1913363 RGD:70903 APOA5 606368 121382 +HGNC:603 APOB apolipoprotein B protein-coding gene gene with protein product Approved 2p24.1 02p24.1 apolipoprotein B (including Ag(x) antigen) Apolipoproteins 405 2001-06-22 2013-05-29 2016-10-05 338 ENSG00000084674 OTTHUMG00000090785 uc002red.3 M14162 NM_000384 CCDS1703 P04114 MGI:88052 RGD:2129 APOB 107730 121386 +HGNC:604 APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "BEDP|CDAR1|APOBEC-1|HEPR" apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 Apolipoprotein B mRNA editing enzyme catalytic subunits 406 1994-07-26 2016-03-07 2016-10-05 339 ENSG00000111701 OTTHUMG00000141288 uc001qtb.4 U72891 NM_001644 CCDS8579 P41238 MGI:103298 RGD:2133 APOBEC1 600130 +HGNC:605 APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "ARCD1|ARP1" apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 2 Apolipoprotein B mRNA editing enzyme catalytic subunits 406 1999-08-12 2016-03-07 2016-10-05 10930 ENSG00000124701 OTTHUMG00000014670 uc003opl.4 AF161698 NM_006789 CCDS4848 Q9Y235 10403781 MGI:1343178 RGD:1308727 APOBEC2 604797 +HGNC:17343 APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "ARP3|PHRBN" phorbolin I apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2001-12-12 2016-03-07 2016-10-05 200315 ENSG00000128383 OTTHUMG00000151004 uc011aoc.3 U03891 NM_145699 CCDS13981 P31941 "11863358|10469298" APOBEC3A 607109 +HGNC:43835 APOBEC3AP1 apolipoprotein B mRNA editing enzyme catalytic subunit 3A pseudogene 1 pseudogene pseudogene Approved 4q33 04q33 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A pseudogene 1 2012-03-23 2016-03-07 2016-03-07 105377532 ENSG00000248822 OTTHUMG00000160902 NG_046667 PGOHUM00000259961 +HGNC:44196 APOBEC3A_B APOBEC3A and APOBEC3B deletion hybrid protein-coding gene gene with protein product Approved 22q13 alternate reference locus 22q13 alternate reference locus Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2012-10-13 2014-01-23 100913187 GL383583 NM_001193289 "19788695|17447845" +HGNC:17352 APOBEC3B apolipoprotein B mRNA editing enzyme catalytic subunit 3B protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "PHRBNL|FLJ21201" phorbolin 3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B "Apolipoprotein B mRNA editing enzyme catalytic subunits|Minor histocompatibility antigens" "406|870" 2001-12-12 2016-03-07 2016-10-05 9582 ENSG00000179750 OTTHUMG00000151085 uc003awo.3 AK024854 NM_004900 "CCDS13982|CCDS58807" Q9UH17 "11863358|10469298" MGI:1933111 APOBEC3B 607110 +HGNC:43836 APOBEC3B-AS1 APOBEC3B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q13.1 22q13.1 APOBEC3B antisense RNA 1 (non-protein coding) 2012-03-23 2012-08-15 2012-10-12 100874530 ENSG00000249310 OTTHUMG00000151083 uc032qpc.2 CX754295 NR_104187 +HGNC:17353 APOBEC3C apolipoprotein B mRNA editing enzyme catalytic subunit 3C protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "APOBEC1L|PBI|bK150C2.3|ARDC2|ARDC4|ARP5" apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2001-12-12 2016-03-07 2016-10-05 27350 ENSG00000244509 OTTHUMG00000151087 uc003awr.4 AF165520 NM_014508 CCDS13983 Q9NRW3 11863358 APOBEC3C 607750 +HGNC:17354 APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "ARP6|APOBEC3DE" APOBEC3E "apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D (putative)|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3E pseudogene|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3D" Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2001-12-12 2016-03-07 2016-03-07 140564 ENSG00000243811 OTTHUMG00000151084 uc062ejh.1 BF832090 NM_152426 CCDS46709 Q96AK3 11863358 APOBEC3D 609900 +HGNC:17356 APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "ARP8|BK150C2.4.MRNA|KA6" apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2001-12-12 2016-03-07 2016-10-05 200316 ENSG00000128394 OTTHUMG00000151080 uc003aww.4 BC038808 NM_145298 "CCDS33648|CCDS33649" Q8IUX4 "11863358|17121840" APOBEC3F 608993 +HGNC:17357 APOBEC3G apolipoprotein B mRNA editing enzyme catalytic subunit 3G protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "CEM15|MDS019|dJ494G10.1|FLJ12740|bK150C2.7" DNA dC->dU-editing enzyme APOBEC-3G apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2001-12-12 2016-03-07 2016-10-05 60489 ENSG00000239713 OTTHUMG00000151081 uc021wpr.2 AF182420 NM_021822 CCDS13984 Q9HC16 11863358 APOBEC3G 607113 +HGNC:24100 APOBEC3H apolipoprotein B mRNA editing enzyme catalytic subunit 3H protein-coding gene gene with protein product Approved 22q13.1 22q13.1 ARP10 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2007-01-26 2016-03-07 2016-03-07 164668 ENSG00000100298 OTTHUMG00000151082 uc021wpu.2 BC069023 NM_181773 "CCDS13985|CCDS54530|CCDS54531|CCDS54532" Q6NTF7 16571802 RGD:1307800 APOBEC3H 610976 +HGNC:32152 APOBEC4 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "MGC26594|FLJ25691|RP1-127C7.4" C1orf169 "chromosome 1 open reading frame 169|apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)" Apolipoprotein B mRNA editing enzyme catalytic subunits 406 2005-07-20 2005-10-27 2016-03-07 2016-03-07 403314 ENSG00000173627 OTTHUMG00000035459 uc001gqn.4 BC021711 NM_203454 CCDS1358 Q8WW27 16082223 MGI:1918531 RGD:1560256 APOBEC4 609908 +HGNC:606 APOBER1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-10-15 +HGNC:24087 APOBR apolipoprotein B receptor protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "APOB48R|APOB100R" "apolipoprotein B48 receptor|apolipoprotein B100 receptor" 2011-02-14 2016-10-05 55911 ENSG00000184730 OTTHUMG00000172705 uc002dqb.2 AK025123 NM_182804 CCDS58442 Q0VD83 10852956 MGI:2176230 RGD:1565169 APOBR 605220 +HGNC:607 APOC1 apolipoprotein C1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 apolipoprotein C-I Apolipoproteins 405 2001-06-22 2016-04-26 2016-10-05 341 ENSG00000130208 OTTHUMG00000180844 uc002pac.2 X00570 NM_001645 CCDS12648 P02654 MGI:88053 RGD:2134 APOC1 107710 +HGNC:608 APOC1P1 apolipoprotein C1 pseudogene 1 pseudogene pseudogene Approved 19q13.32 19q13.32 apolipoprotein C-I pseudogene 1 2001-06-22 2016-04-26 2016-04-26 342 ENSG00000214855 OTTHUMG00000177534 M20903 NR_028412 PGOHUM00000263463 +HGNC:609 APOC2 apolipoprotein C2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 apolipoprotein C-II Apolipoproteins 405 2001-06-22 2016-04-26 2016-10-05 344 ENSG00000234906 OTTHUMG00000180847 uc060zux.1 X00568 NM_000483 CCDS12650 P02655 MGI:88054 RGD:2135 APOC2 608083 121388 +HGNC:610 APOC3 apolipoprotein C3 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 apolipoprotein C-III Apolipoproteins 405 2001-06-22 2016-04-26 2016-04-26 345 ENSG00000110245 OTTHUMG00000046115 uc001ppt.2 X01388 NM_000040 CCDS8377 P02656 MGI:88055 RGD:2136 APOC3 107720 160053 +HGNC:611 APOC4 apolipoprotein C4 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 apolipoprotein C-IV Apolipoproteins 405 1995-05-08 2016-04-26 2016-10-05 346 ENSG00000267467 OTTHUMG00000180845 uc060zuq.1 U32576 NM_001646 CCDS12649 P55056 8530039 MGI:87878 RGD:70959 APOC4 600745 +HGNC:44426 APOC4-APOC2 APOC4-APOC2 readthrough (NMD candidate) other readthrough Approved 19q13.32 19q13.32 APOC4-APOC2 readthrough 2013-05-14 2013-09-30 2013-09-30 100533990 ENSG00000224916 OTTHUMG00000180846 NR_037932 +HGNC:612 APOD apolipoprotein D protein-coding gene gene with protein product Approved 3q29 03q29 "Apolipoproteins|Lipocalins" "405|631" 2001-06-22 2014-11-19 347 ENSG00000189058 OTTHUMG00000155854 uc003fur.2 NM_001647 CCDS33925 P05090 "2439269|3453108" MGI:88056 RGD:2137 APOD 107740 +HGNC:613 APOE apolipoprotein E protein-coding gene gene with protein product Approved 19q13.32 19q13.32 AD2 Alzheimer disease 2 (APOE*E4-associated, late onset) Apolipoproteins 405 2001-06-22 2016-10-05 348 ENSG00000130203 OTTHUMG00000128901 uc002pab.4 K00396 NM_000041 CCDS12647 P02649 10662539 MGI:88057 RGD:2138 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ APOE 107741 121390 +HGNC:614 APOEL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:615 APOF apolipoprotein F protein-coding gene gene with protein product Approved 12q13.3 12q13.3 Apolipoproteins 405 1994-11-16 2016-10-05 319 ENSG00000175336 OTTHUMG00000170715 uc001sle.2 L27050 NM_001638 CCDS44923 Q13790 8093033 MGI:104539 RGD:1560713 APOF 107760 +HGNC:616 APOH apolipoprotein H protein-coding gene gene with protein product Approved 17q24.2 17q24.2 BG beta-2-glycoprotein I B2G1 apolipoprotein H (beta-2-glycoprotein I) "Apolipoproteins|Sushi domain containing" "405|1179" 1987-09-11 2015-12-17 2015-12-17 350 ENSG00000091583 OTTHUMG00000179530 uc002jfn.5 NM_000042 CCDS11663 P02749 1582254 MGI:88058 RGD:1310625 APOH 138700 +HGNC:618 APOL1 apolipoprotein L1 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 APOL apolipoprotein L Apolipoproteins 405 1998-12-03 2015-11-13 2016-10-12 8542 ENSG00000100342 OTTHUMG00000030427 uc011amq.3 AF019225 NM_145343 "CCDS13925|CCDS13926|CCDS46702" O14791 "9325276|11374903|16020735" LRG_169|http://www.lrg-sequence.org/LRG/LRG_169 APOL1 603743 240672 +HGNC:619 APOL2 apolipoprotein L2 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 APOL-II apolipoprotein L-II Apolipoproteins 405 1999-10-29 2015-12-15 2015-12-15 23780 ENSG00000128335 OTTHUMG00000150634 uc003apa.4 AF324224 NM_145637 CCDS43014 Q9BQE5 "10591208|11374903" MGI:2444921 APOL2 607252 +HGNC:14868 APOL3 apolipoprotein L3 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "CG12-1|APOLIII" Apolipoproteins 405 2001-03-21 2015-12-15 2016-10-05 80833 ENSG00000128284 OTTHUMG00000150632 uc003aot.4 AF305227 NM_145641 "CCDS13922|CCDS13924" O95236 11374903 RGD:1306480 APOL3 607253 +HGNC:14867 APOL4 apolipoprotein L4 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 APOLIV Apolipoproteins 405 2001-03-21 2015-12-15 2016-10-05 80832 ENSG00000100336 OTTHUMG00000150630 uc032qnf.2 AF305226 NM_145660 "CCDS74851|CCDS74852" Q9BPW4 11374903 APOL4 607254 +HGNC:14869 APOL5 apolipoprotein L5 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 APOLV Apolipoproteins 405 2001-03-21 2015-12-15 2015-12-15 80831 ENSG00000128313 OTTHUMG00000150588 uc003aof.4 AY014878 NM_030642 CCDS13920 Q9BWW9 11374903 APOL5 607255 +HGNC:14870 APOL6 apolipoprotein L6 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "APOL-VI|APOLVI" Apolipoproteins 405 2001-03-21 2015-12-15 2015-12-15 80830 ENSG00000221963 OTTHUMG00000150615 uc003aoe.4 AY014879 NM_030641 CCDS13919 Q9BWW8 "11374903|15671246" MGI:1919189 APOL6 607256 +HGNC:25268 APOLD1 apolipoprotein L domain containing 1 protein-coding gene gene with protein product Approved 12p13.1 12p13.1 "FLJ25138|DKFZP434F0318" 2006-01-23 2006-01-23 2016-10-05 81575 ENSG00000178878 OTTHUMG00000153561 uc001raw.5 AL136783 NM_030817 "CCDS8654|CCDS44833" Q96LR9 11230166 MGI:2685921 RGD:1303123 APOLD1 612456 +HGNC:13916 APOM apolipoprotein M protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "ApoM|G3a|NG20" "Apolipoproteins|Lipocalins" "405|631" 2002-08-02 2016-10-05 55937 ENSG00000204444 OTTHUMG00000031250 uc003nvl.4 AJ245434 NM_019101 "CCDS4710|CCDS59004" O95445 "10531326|11418126" MGI:1930124 RGD:620773 APOM 606907 +HGNC:28727 APOO apolipoprotein O protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "MGC4825|My025|Mic23|MIC26" FAM121B family with sequence similarity 121B Apolipoproteins 405 2006-07-11 2007-01-17 2007-01-17 2015-09-11 79135 ENSG00000184831 OTTHUMG00000021259 uc004dax.4 BC016814 NM_024122 CCDS14208 Q9BUR5 "16956892|25764979|25781180" MGI:1915566 RGD:1565289 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=APOO APOO 300753 +HGNC:24009 APOOL apolipoprotein O like protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "UNQ8193|AAIR8193|Mic27" "CXorf33|FAM121A" "chromosome X open reading frame 33|family with sequence similarity 121A" 2004-08-16 2007-01-17 2016-02-15 2016-02-15 139322 ENSG00000155008 OTTHUMG00000021930 uc004eem.4 AK130506 NM_198450 CCDS48138 Q6UXV4 23704930 MGI:1915367 RGD:1549725 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=APOOL APOOL 300955 +HGNC:48739 APOOP1 apolipoprotein O pseudogene 1 pseudogene pseudogene Approved 5q33.3 05q33.3 2013-06-07 2013-06-07 100286948 ENSG00000270560 OTTHUMG00000184530 NG_029196 PGOHUM00000235820 +HGNC:48740 APOOP2 apolipoprotein O pseudogene 2 pseudogene pseudogene Approved 3p11.2 03p11.2 2013-06-07 2013-06-07 100129005 ENSG00000240902 OTTHUMG00000158993 NG_012899 PGOHUM00000238093 +HGNC:48741 APOOP3 apolipoprotein O pseudogene 3 pseudogene pseudogene Approved 12q14.3 12q14.3 2013-06-07 2013-06-07 100131528 ENSG00000255700 OTTHUMG00000168865 NG_012898 PGOHUM00000239834 +HGNC:48742 APOOP4 apolipoprotein O pseudogene 4 pseudogene pseudogene Approved 4q13.2 04q13.2 2013-06-07 2013-06-07 100128725 ENSG00000248122 OTTHUMG00000160819 NG_012897 PGOHUM00000245560 +HGNC:48743 APOOP5 apolipoprotein O pseudogene 5 pseudogene pseudogene Approved 16q21 16q21 2013-06-07 2015-01-29 644649 ENSG00000260240 OTTHUMG00000173108 NR_028471 PGOHUM00000293621 +HGNC:20492 APOPT1 apoptogenic 1, mitochondrial protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "MGC2562|APOP-1" apoptogenic protein 1 C14orf153 "chromosome 14 open reading frame 153|apoptogenic 1" 2004-06-11 2011-09-07 2012-06-28 2015-08-24 84334 ENSG00000256053 OTTHUMG00000153929 uc010tyc.3 BC007412 NM_032374 CCDS9983 Q96IL0 "16782708|18977203" MGI:1915270 RGD:1304719 616003 444676 +HGNC:620 APP amyloid beta precursor protein protein-coding gene gene with protein product Approved 21q21.3 21q21.3 peptidase nexin-II AD1 "Alzheimer disease|amyloid beta (A4) precursor protein" Endogenous ligands 542 1986-01-01 2016-01-14 2016-10-05 351 ENSG00000142192 OTTHUMG00000078438 uc002ylz.4 M15533 NM_000484 "CCDS13576|CCDS13577|CCDS33523|CCDS46638|CCDS46639|CCDS56211|CCDS56212|CCDS56213" P05067 1679289 MGI:88059 RGD:2139 Alzheimer Disease & Frontotemporal Dementia Mutation Database|http://www.molgen.ua.ac.be/ADMutations/ APP 104760 121393 I02.015 +HGNC:622 APPBP2 amyloid beta precursor protein binding protein 2 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 "KIAA0228|Hs.84084|PAT1" protein interacting with APP tail 1 "amyloid beta precursor protein (cytoplasmic tail)-binding protein 2|amyloid beta precursor protein (cytoplasmic tail) binding protein 2" 1999-06-25 2016-01-21 2016-01-21 10513 ENSG00000062725 OTTHUMG00000180048 uc002iys.3 AF017782 NM_006380 CCDS32699 Q92624 9843960 MGI:1914134 RGD:1306488 APPBP2 605324 +HGNC:24035 APPL1 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 APPL DCC-interacting protein 13-alpha adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1 "Pleckstrin homology domain containing|BAR-PH domain containing" "682|1291" 2007-01-26 2016-03-14 2016-03-14 26060 ENSG00000157500 OTTHUMG00000133756 uc003dio.4 AB037849 NM_012096 CCDS2882 Q9UKG1 "10490823|17030088" MGI:1920243 RGD:1309388 APPL1 604299 436880 +HGNC:18242 APPL2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "FLJ10659|DIP13B" DCC-interacting protein 13-beta adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2 "Pleckstrin homology domain containing|BAR-PH domain containing" "682|1291" 2007-01-26 2016-03-14 2016-03-14 55198 ENSG00000136044 OTTHUMG00000169853 uc001tlf.2 AY113704 NM_018171 "CCDS9101|CCDS58275|CCDS58276" Q8NEU8 "11431708|17030088" MGI:2384914 RGD:1563028 APPL2 606231 +HGNC:623 APPL entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:626 APRT adenine phosphoribosyltransferase protein-coding gene gene with protein product Approved 16q24.3 16q24.3 2001-06-22 2016-10-05 353 ENSG00000198931 OTTHUMG00000175454 uc002flv.4 NM_000485 "CCDS32511|CCDS45546" P07741 MGI:88061 RGD:1307758 APRT 102600 121400 2.4.2.7 +HGNC:44173 APTR Alu-mediated CDKN1A/p21 transcriptional regulator (non-protein coding) non-coding RNA RNA, long non-coding Approved 7q11.23 07q11.23 RSBN1L-AS1 RSBN1L antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2012-06-30 2014-04-22 2014-04-22 2014-04-22 100505854 ENSG00000214293 OTTHUMG00000162596 AF290475 NR_038361 24748121 RGD:9685233 616048 +HGNC:15984 APTX aprataxin protein-coding gene gene with protein product Approved 9p21.1 09p21.1 "FLJ20157|AOA|AOA1|EAOH|EOAHA" AXA1 ataxia 1, early onset with hypoalbuminemia 2001-07-16 2003-04-03 2016-10-05 54840 ENSG00000137074 OTTHUMG00000019759 uc064snf.1 AK000164 NM_017692 "CCDS47956|CCDS56568|CCDS75827|CCDS6532" Q7Z2E3 "11586299|11586300" MGI:1913658 RGD:628740 APTX 606350 121402 +HGNC:633 AQP1 aquaporin 1 (Colton blood group) protein-coding gene gene with protein product Approved 7p14.3 07p14.3 CHIP28 CO "Colton blood group|aquaporin 1 (channel-forming integral protein, 28kDa)|aquaporin 1 (channel-forming integral protein, 28kDa, CO blood group)|aquaporin 1" "Aquaporins|Blood group antigens" "305|454" 1993-07-09 2014-01-02 2016-10-12 358 ENSG00000240583 OTTHUMG00000023944 uc003tbv.3 M77829 NM_000385 "CCDS5431|CCDS55096|CCDS55097|CCDS55098" P29972 "1722319|3166547" MGI:103201 RGD:2141 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_808|http://www.lrg-sequence.org/LRG/LRG_808" AQP1 107776 objectId:688 +HGNC:634 AQP2 aquaporin 2 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 aquaporin 2 (collecting duct) Aquaporins 305 1993-07-09 2016-01-15 2016-10-12 359 ENSG00000167580 OTTHUMG00000169709 uc001rvn.4 NM_000486 CCDS8792 P41181 7512890 MGI:1096865 RGD:2142 LRG_717|http://www.lrg-sequence.org/LRG/LRG_717 AQP2 107777 121410 objectId:689 +HGNC:636 AQP3 aquaporin 3 (Gill blood group) protein-coding gene gene with protein product Approved 9p13.3 09p13.3 GIL Gill blood group "aquaporin 3|aquaporin 3 (GIL blood group)" "Aquaporins|Blood group antigens" "305|454" 1994-07-25 2006-02-23 2016-10-12 360 ENSG00000165272 OTTHUMG00000019769 uc003zsx.4 NM_004925 CCDS6542 Q92482 7558005 MGI:1333777 RGD:68428 LRG_821|http://www.lrg-sequence.org/LRG/LRG_821 AQP3 600170 objectId:690 +HGNC:637 AQP4 aquaporin 4 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 MIWC Aquaporins 305 1994-07-25 2016-10-05 361 ENSG00000171885 OTTHUMG00000131955 uc002kwa.4 U63622 "NM_001650|NM_004028" "CCDS11889|CCDS58617|CCDS82244" P55087 7528931 MGI:107387 RGD:2143 AQP4 600308 objectId:691 +HGNC:26399 AQP4-AS1 AQP4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18q11.2 18q11.2 FLJ30507 "C18orf16|CHST9-AS1" "chromosome 18 open reading frame 16|CHST9 antisense RNA 1" 2004-04-30 2012-10-03 2012-10-03 2016-10-05 147429 ENSG00000260372 OTTHUMG00000131954 uc010xbm.3 AK055069 NR_026908 +HGNC:638 AQP5 aquaporin 5 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 Aquaporins 305 1994-07-25 2016-10-05 362 ENSG00000161798 OTTHUMG00000169710 uc001rvo.4 U46569 NM_001651 CCDS8793 P55064 "8621489|23830519" MGI:106215 RGD:2144 AQP5 600442 363071 objectId:692 +HGNC:639 AQP6 aquaporin 6 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 AQP2L aquaporin 6, kidney specific Aquaporins 305 1996-08-21 2015-11-27 2016-10-05 363 ENSG00000086159 OTTHUMG00000133548 uc058nuf.1 AL137716 "NM_001652|NM_053286" CCDS31798 Q13520 8812490 MGI:1341204 RGD:71100 AQP6 601383 objectId:693 +HGNC:640 AQP7 aquaporin 7 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "AQP9|AQPap" AQP7L Aquaporins 305 1997-04-10 2016-10-05 364 ENSG00000165269 OTTHUMG00000019773 uc003zst.3 AB006190 NM_001170 "CCDS6541|CCDS83353|CCDS83354|CCDS83356" O14520 9252401 MGI:1314647 RGD:2145 AQP7 602974 objectId:694 +HGNC:32048 AQP7P1 aquaporin 7 pseudogene 1 pseudogene pseudogene Approved 9q13 09q13 2005-08-09 2016-10-05 375719 ENSG00000186466 OTTHUMG00000013312 XM_372110 11952783 PGOHUM00000236163 +HGNC:32049 AQP7P2 aquaporin 7 pseudogene 2 pseudogene pseudogene Approved 9q13 09q13 2005-08-09 2016-10-05 389756 ENSG00000181997 OTTHUMG00000013329 XM_497059 11952783 PGOHUM00000236181 +HGNC:31976 AQP7P3 aquaporin 7 pseudogene 3 pseudogene pseudogene Approved 9q21.11 09q21.11 AQPap-3 2005-08-09 2015-07-31 441432 ENSG00000279688 OTTHUMG00000189282 NG_005142 A6NL99 11952783 PGOHUM00000306166 +HGNC:32056 AQP7P4 aquaporin 7 pseudogene 4 pseudogene pseudogene Approved 9q13 09q13 2005-08-09 2014-11-18 100132938 ENSG00000176115 OTTHUMG00000013311 NG_021659 PGOHUM00000260514 +HGNC:51836 AQP7P5 aquaporin 7 pseudogene 5 other unknown Approved 9p11.2 09p11.2 2015-07-31 2016-07-19 102724655 ENSG00000278122 OTTHUMG00000013285 XM_017015366 PGOHUM00000303815 +HGNC:642 AQP8 aquaporin 8 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 Aquaporins 305 1997-06-09 2016-10-05 343 ENSG00000103375 OTTHUMG00000097013 uc002doc.4 BC040630 NM_001169 CCDS10626 O94778 "9806845|10393433" MGI:1195271 RGD:2146 AQP8 603750 objectId:695 +HGNC:643 AQP9 aquaporin 9 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "SSC1|HsT17287" Aquaporins 305 1997-08-28 2016-10-05 366 ENSG00000103569 OTTHUMG00000132631 uc002aez.3 AF016495 NM_020980 "CCDS10165|CCDS81887" O43315 MGI:1891066 RGD:68433 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=AQP9 AQP9 602914 objectId:696 +HGNC:16029 AQP10 aquaporin 10 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 Aquaporins 305 2001-07-04 2014-11-18 89872 ENSG00000143595 OTTHUMG00000035980 uc001feu.3 AF159174 NM_080429 CCDS1065 Q96PS8 11573934 RGD:1596307 AQP10 606578 objectId:697 +HGNC:19940 AQP11 aquaporin 11 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 Aquaporins 305 2002-12-09 2016-10-05 282679 ENSG00000178301 OTTHUMG00000165194 uc001oyj.4 AB028147 NM_173039 CCDS8251 Q8NBQ7 16107722 MGI:1913583 RGD:628763 AQP11 609914 +HGNC:19941 AQP12A aquaporin 12A protein-coding gene gene with protein product Approved 2q37.3 02q37.3 AQP12 aquaporin 12 Aquaporins 305 2002-12-09 2005-05-26 2005-05-26 2015-08-28 375318 ENSG00000184945 OTTHUMG00000183906 uc061ujk.1 AB040748 NM_198998 Q8IXF9 MGI:2664636 RGD:1562727 AQP12A 609789 +HGNC:6096 AQP12B aquaporin 12B protein-coding gene gene with protein product Approved 2q37.3 02q37.3 INSSA3 insulin synthesis associated 3 Aquaporins 305 2000-03-29 2005-05-26 2005-05-26 2015-09-10 653437 ENSG00000185176 OTTHUMG00000152263 uc010fzj.4 BC041460 XM_011511671 CCDS46560 A6NM10 MGI:2664636 AQP12B +HGNC:29513 AQR aquarius intron-binding spliceosomal factor protein-coding gene gene with protein product Approved 15q14 15q14 "KIAA0560|fSAP164|IBP160" functional spliceosome-associated protein 164 aquarius homolog (mouse) UPF1 like RNA helicases 1169 2004-06-24 2013-09-12 2016-01-15 9716 ENSG00000021776 OTTHUMG00000172257 uc001ziv.4 AB011132 NM_014691 CCDS42013 O60306 "9626505|16949364" MGI:1276102 RGD:1306223 AQR 610548 +HGNC:644 AR androgen receptor protein-coding gene gene with protein product Approved Xq12 Xq12 "AIS|NR3C4|SMAX1|HUMARA" "testicular feminization|Kennedy disease" "DHTR|SBMA" "dihydrotestosterone receptor|spinal and bulbar muscular atrophy" Nuclear hormone receptors 71 1986-01-01 2008-08-07 2014-11-19 367 ENSG00000169083 OTTHUMG00000021740 uc004dwu.3 M20132 NM_000044 "CCDS14387|CCDS43965" P10275 "3353726|3377788" MGI:88064 RGD:2147 "Androgen Receptor|http://androgendb.mcgill.ca/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AR|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/" AR 313700 132285 objectId:628 +HGNC:646 ARAF A-Raf proto-oncogene, serine/threonine kinase protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 ARAF1 v-raf murine sarcoma 3611 viral oncogene homolog 1 "Mitogen-activated protein kinase kinase kinases|RAF family" "654|1157" 1986-01-01 2005-01-19 2014-06-26 2016-10-05 369 ENSG00000078061 OTTHUMG00000021446 uc064yvp.1 X04790 XM_006724529 "CCDS35232|CCDS59164|CCDS75970" P10398 MGI:88065 RGD:2148 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARAF ARAF 311010 objectId:1933 +HGNC:50824 ARAFP1 ARAF pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 2014-06-26 2015-07-30 100421741 ENSG00000231264 OTTHUMG00000188127 NG_026477 PGOHUM00000232806 +HGNC:647 ARAFP2 ARAF pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 PKS1 "ARAF2|ARAFPS|ARAF2P" "v-raf murine sarcoma 3611 viral oncogene homolog pseudogene|v-raf murine sarcoma 3611 viral oncogene homolog 2, pseudogene" 1986-01-01 2014-06-26 2014-06-26 2014-11-19 644000 ENSG00000224368 OTTHUMG00000156379 NG_008381 1505215 PGOHUM00000232787 +HGNC:35474 ARAFP3 ARAF pseudogene 3 pseudogene pseudogene Approved 7q11.21 07q11.21 ARAF3P v-raf murine sarcoma 3611 viral oncogene homolog 3, pseudogene 2009-04-15 2014-06-26 2014-06-26 2014-06-26 285893 ENSG00000227298 OTTHUMG00000156266 AC006455 NG_003157 PGOHUM00000233315 +HGNC:16925 ARAP1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 CENTD2 centaurin, delta 2 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|Sterile alpha motif domain containing" "395|403|682|760" 2001-10-29 2008-09-22 2008-09-22 2016-10-05 116985 ENSG00000186635 OTTHUMG00000157102 uc001osu.4 AF411983 NM_001040118 "CCDS8217|CCDS41687|CCDS44671" Q96P48 MGI:1916960 RGD:1310385 ARAP1 606646 +HGNC:39993 ARAP1-AS1 ARAP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q13.4 11q13.4 ARAP1 antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100874075 ENSG00000256007 OTTHUMG00000167950 uc058fck.1 +HGNC:39994 ARAP1-AS2 ARAP1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 11q13.4 11q13.4 ARAP1 antisense RNA 2 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100506020 ENSG00000245148 OTTHUMG00000167951 uc058fcw.1 +HGNC:16924 ARAP2 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding gene gene with protein product Approved 4p14 04p14 PARX CENTD1 centaurin, delta 1 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|Sterile alpha motif domain containing" "395|403|682|760" 2001-10-29 2008-09-22 2008-09-22 2016-10-05 116984 ENSG00000047365 OTTHUMG00000097811 uc003gsq.3 AF411982 NM_015230 CCDS3441 Q8WZ64 MGI:2684416 RGD:1306452 ARAP2 606645 +HGNC:24097 ARAP3 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "FLJ21065|DRAG1" CENTD3 centaurin, delta 3 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|Sterile alpha motif domain containing" "395|403|682|760" 2005-01-10 2008-09-22 2008-09-22 2015-09-11 64411 ENSG00000120318 OTTHUMG00000129610 uc003llm.4 AJ310567 NM_022481 CCDS4266 Q8WWN8 "11804589|12015138" MGI:2147274 RGD:1304938 ARAP3 606647 +HGNC:648 ARC activity regulated cytoskeleton associated protein protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "KIAA0278|Arg3.1" 2000-05-23 2016-06-24 2016-06-24 23237 ENSG00000198576 OTTHUMG00000134310 uc003ywn.2 AF193421 NM_015193 CCDS34950 Q7LC44 "10970730|17466953" MGI:88067 RGD:62037 ARC 612461 +HGNC:649 ARCN1 archain 1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 COPD coatomer protein complex, subunit delta 1994-08-29 2003-01-29 2014-11-18 372 ENSG00000095139 OTTHUMG00000166340 uc001ptq.4 X81197 XM_005271542 "CCDS8400|CCDS44749" P48444 "7782067|8854871" MGI:2387591 RGD:1359110 ARCN1 600820 +HGNC:650 ARCN2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-04-21 +HGNC:651 AREG amphiregulin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "SDGF|AREGB" "schwannoma-derived growth factor|amphiregulin B" Endogenous ligands 542 1989-05-19 2008-08-01 2015-08-24 374 ENSG00000109321 OTTHUMG00000130006 uc032tme.2 M30704 NM_001657 CCDS3565 P15514 MGI:88068 RGD:2149 AREG 104640 +HGNC:20363 AREL1 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FIEL1 fibrosis-inducing E3 ligase 1 KIAA0317 KIAA0317 2003-11-21 2013-04-15 2013-04-15 2016-10-05 9870 ENSG00000119682 OTTHUMG00000154499 uc001xqb.4 AB002315 NM_014821 CCDS41971 O15033 "9205841|23479728|27162139" MGI:1915747 RGD:1307597 615380 +HGNC:652 ARF1 ADP ribosylation factor 1 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "ARF GTPase family|Endogenous ligands" "357|542" 1992-07-09 2015-11-19 2015-11-19 375 ENSG00000143761 OTTHUMG00000037595 uc001hrs.3 M84326 NM_001024227 CCDS1565 P84077 1577740 MGI:99431 RGD:621270 ARF1 103180 +HGNC:22500 ARF1P1 ADP ribosylation factor 1 pseudogene 1 pseudogene pseudogene Approved 7q21.3 07q21.3 2005-11-07 2015-11-19 2015-11-19 442334 ENSG00000219807 OTTHUMG00000155563 XM_498225 PGOHUM00000302854 +HGNC:39883 ARF1P2 ADP ribosylation factor 1 pseudogene 2 pseudogene pseudogene Approved 12q24.31 12q24.31 2011-04-08 2015-11-19 2015-11-19 100420012 ENSG00000213137 OTTHUMG00000169223 NG_024047 PGOHUM00000291479 +HGNC:39884 ARF1P3 ADP ribosylation factor 1 pseudogene 3 pseudogene pseudogene Approved 8q24.13 08q24.13 2011-04-08 2015-11-19 2015-11-19 442396 ENSG00000253885 OTTHUMG00000165003 NG_022434 PGOHUM00000303675 +HGNC:654 ARF3 ADP ribosylation factor 3 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 small GTP binding protein ARF GTPase family 357 1992-07-09 2015-11-19 2015-11-19 377 ENSG00000134287 OTTHUMG00000168080 uc001rsr.3 M74491 NM_001659 CCDS8774 P61204 8661066 MGI:99432 RGD:621273 ARF3 103190 +HGNC:655 ARF4 ADP ribosylation factor 4 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 ARF2 ADP-ribosylation factor 2 ARF GTPase family 357 1992-07-09 2015-11-19 2015-11-19 378 ENSG00000168374 OTTHUMG00000158601 uc003dix.5 M36341 NM_001660 CCDS2884 P18085 2107548 MGI:99433 RGD:621275 ARF4 601177 +HGNC:51593 ARF4-AS1 ARF4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.3 03p14.3 2015-03-11 2015-03-11 106144532 ENSG00000272146 OTTHUMG00000185640 "BF793425|AI127075" NR_132370 +HGNC:657 ARF4P1 ADP ribosylation factor 4 pseudogene 1 pseudogene pseudogene Approved 9q34.2 09q34.2 ARF4P ADP-ribosylation factor 4 pseudogene 1992-07-09 2009-11-25 2015-11-19 2015-11-19 380 ENSG00000271525 OTTHUMG00000184710 M31889 NG_001075 2107548 PGOHUM00000304471 +HGNC:16599 ARF4P2 ADP ribosylation factor 4 pseudogene 2 pseudogene pseudogene Approved 20q13.33 20q13.33 dJ885L7.7 2001-09-17 2015-11-19 2015-11-19 170485 ENSG00000236527 OTTHUMG00000032934 AL035669 NG_001031 PGOHUM00000297033 +HGNC:32380 ARF4P3 ADP ribosylation factor 4 pseudogene 3 pseudogene pseudogene Approved 13q32.3 13q32.3 2005-11-07 2015-11-19 2015-11-19 390423 ENSG00000214051 OTTHUMG00000017292 XM_372496 PGOHUM00000292048 +HGNC:37628 ARF4P4 ADP ribosylation factor 4 pseudogene 4 pseudogene pseudogene Approved 13q31.1 13q31.1 2009-11-26 2015-11-19 2015-11-19 100129023 ENSG00000231222 OTTHUMG00000017143 NG_016164 PGOHUM00000248647 +HGNC:37629 ARF4P5 ADP ribosylation factor 4 pseudogene 5 pseudogene pseudogene Approved 1p31.1 01p31.1 2009-11-26 2015-11-19 2015-11-19 100316867 NG_016179 +HGNC:658 ARF5 ADP ribosylation factor 5 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 ARF GTPase family 357 1994-02-01 2015-11-19 2016-10-05 381 ENSG00000004059 OTTHUMG00000023246 uc003vmb.3 NM_001662 CCDS34745 P84085 1993656 MGI:99434 RGD:621278 ARF5 103188 +HGNC:659 ARF6 ADP ribosylation factor 6 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 ARF GTPase family 357 1994-02-01 2015-11-19 2015-11-19 382 ENSG00000165527 OTTHUMG00000140296 uc001wxg.5 NM_001663 CCDS9695 P62330 "1993656|10343114" MGI:99435 RGD:621279 ARF6 600464 +HGNC:15852 ARFGAP1 ADP ribosylation factor GTPase activating protein 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FLJ10767|bA261N11.3" ARF1GAP ADP-ribosylation factor 1 GTPase activating protein ArfGAPs 395 2001-06-21 2002-08-23 2015-11-19 2015-11-19 55738 ENSG00000101199 OTTHUMG00000032965 uc002yel.5 AK001629 NM_018209 "CCDS13515|CCDS13516|CCDS63326|CCDS63327|CCDS63328" Q8N6T3 11210549 MGI:2183559 RGD:708452 ARFGAP1 608377 +HGNC:13504 ARFGAP2 ADP ribosylation factor GTPase activating protein 2 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "IRZ|Zfp289|FLJ14576" ZNF289 zinc finger protein 289, ID1 regulated ArfGAPs 395 2001-11-23 2008-01-09 2015-11-19 2016-10-05 84364 ENSG00000149182 OTTHUMG00000166773 uc001ndt.4 AK027482 NM_032389 "CCDS7926|CCDS73283" Q8N6H7 "11278321|14690497" MGI:1924288 RGD:1306177 ARFGAP2 606908 +HGNC:661 ARFGAP3 ADP ribosylation factor GTPase activating protein 3 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 ARFGAP1 ADP-ribosylation factor GTPase activating protein 1 ArfGAPs 395 1999-11-19 2002-08-23 2015-11-19 2015-11-19 26286 ENSG00000242247 OTTHUMG00000150718 uc003bdd.3 AK002083 NM_014570 "CCDS14042|CCDS46722" Q9NP61 "10704287|11172815" MGI:1913501 RGD:1560066 ARFGAP3 612439 +HGNC:15772 ARFGEF1 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding gene gene with protein product Approved 8q13.2 08q13.2 "DKFZP434L057|BIG1|ARFGEP1|p200" Brefeldin A-inhibited guanine nucleotide-exchange protein 1 ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited) 2004-08-09 2015-11-19 2016-10-05 10565 ENSG00000066777 OTTHUMG00000164626 uc003xxo.2 AF084520 NM_006421 CCDS6199 Q9Y6D6 "10212200|8917509" MGI:2442988 RGD:1560793 ARFGEF1 604141 +HGNC:15853 ARFGEF2 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 BIG2 Brefeldin A-inhibited guanine nucleotide-exchange protein 2 ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) A-kinase anchoring proteins 396 2001-06-21 2015-11-19 2015-11-19 10564 ENSG00000124198 OTTHUMG00000032687 uc002xtx.5 AF084521 NM_006420 CCDS13411 Q9Y6D5 10212200 MGI:2139354 RGD:631430 ARFGEF2 605371 121412 +HGNC:21213 ARFGEF3 ARFGEF family member 3 protein-coding gene gene with protein product Approved 6q23.3-q24.1 06q23.3-q24.1 "dJ171N11.1|BIG3|PPP1R33" protein phosphatase 1, regulatory subunit 33 "C6orf92|KIAA1244" "chromosome 6 open reading frame 92|KIAA1244" Protein phosphatase 1 regulatory subunits 694 2003-11-21 2015-01-26 2015-01-26 2016-10-11 57221 ENSG00000112379 OTTHUMG00000015670 AB033070 NM_020340 CCDS5189 Q5TH69 MGI:106387 RGD:1309903 +HGNC:21496 ARFIP1 ADP ribosylation factor interacting protein 1 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 HSU52521 arfaptin 1 Classical BAR domain containing 1292 2003-07-21 2015-11-19 2015-11-19 27236 ENSG00000164144 OTTHUMG00000161468 uc003inc.5 U52521 NM_014447 "CCDS3780|CCDS34080" P53367 "9038142|10413101" MGI:1277120 RGD:708401 ARFIP1 605928 +HGNC:17160 ARFIP2 ADP ribosylation factor interacting protein 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 POR1 arfaptin 2 Classical BAR domain containing 1292 2003-07-21 2015-11-19 2016-10-05 23647 ENSG00000132254 OTTHUMG00000133406 uc001mdk.4 BC000392 NM_012402 "CCDS7765|CCDS55739|CCDS55740|CCDS73250" P53365 "8670882|9038142" MGI:1924182 RGD:1303204 ARFIP2 601638 +HGNC:662 ARFRP1 ADP ribosylation factor related protein 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "ARP|Arp1|ARL18" ARF GTPase family 357 1999-06-02 2015-11-19 2016-10-05 10139 ENSG00000101246 OTTHUMG00000032993 uc032ppj.2 X91504 XM_017027576 "CCDS13533|CCDS46630|CCDS68172|CCDS68173" Q13795 8530503 MGI:1923938 RGD:621683 ARFRP1 604699 +HGNC:663 ARG1 arginase 1 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 arginase, liver 2001-06-22 2013-05-01 2016-10-05 383 ENSG00000118520 OTTHUMG00000015566 uc003qcp.3 XM_011535801 "CCDS5145|CCDS59038" P05089 22959135 MGI:88070 RGD:2150 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=ARG1 ARG1 608313 121415 objectId:1244 3.5.3.1 +HGNC:664 ARG2 arginase 2 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 arginase, type II 1996-08-06 2013-05-01 2014-11-19 384 ENSG00000081181 OTTHUMG00000171807 uc001xjs.4 D86724 NM_001172 CCDS9785 P78540 "8954792|8898077" MGI:1330806 RGD:2151 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=ARG2 ARG2 107830 objectId:1245 +HGNC:30146 ARGFX arginine-fifty homeobox protein-coding gene gene with protein product Approved 3q13.33 03q13.33 PRD class homeoboxes and pseudogenes 521 2005-05-05 2015-12-14 503582 ENSG00000186103 OTTHUMG00000159395 uc062myc.1 NM_001012659 CCDS33834 A6NJG6 "17005330|20565723" ARGFX 611164 8418 +HGNC:17252 ARGFXP1 arginine-fifty homeobox pseudogene 1 pseudogene pseudogene Approved 5q23.2 05q23.2 PRD class homeoboxes and pseudogenes 521 2005-05-05 2011-06-20 503583 ENSG00000240058 OTTHUMG00000159399 NG_004853 8353 +HGNC:23977 ARGFXP2 arginine-fifty homeobox pseudogene 2 pseudogene pseudogene Approved 17q11.2 17q11.2 PRD class homeoboxes and pseudogenes 521 2005-05-05 2011-06-20 503640 ENSG00000265293 OTTHUMG00000179565 NR_002222 8354 +HGNC:25482 ARGLU1 arginine and glutamate rich 1 protein-coding gene gene with protein product Approved 13q33.3 13q33.3 FLJ10154 2007-11-28 2007-11-28 2014-11-19 55082 ENSG00000134884 OTTHUMG00000017321 uc001vqk.5 BC071587 NM_018011 CCDS41906 Q9NWB6 21454576 MGI:2442985 RGD:1310061 ARGLU1 614046 +HGNC:673 ARHGAP1 Rho GTPase activating protein 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "RhoGAP|p50rhoGAP|CDC42GAP|Cdc42GAP" "Rho GTPase activating proteins|BCH domain containing " "721|1299" 1997-08-28 2014-11-18 392 ENSG00000175220 OTTHUMG00000166567 uc001ndd.5 BC018118 NM_004308 CCDS7922 Q07960 8288572 MGI:2445003 RGD:1306068 ARHGAP1 602732 +HGNC:674 ARHGAP4 Rho GTPase activating protein 4 protein-coding gene gene with protein product Approved Xq28 Xq28 "KIAA0131|C1|p115|RhoGAP4|SrGAP4" Rho-GAP hematopoietic protein C1 "Rho GTPase activating proteins|F-BAR domain containing " "721|1288" 1997-08-28 2015-09-11 393 ENSG00000089820 OTTHUMG00000024226 uc065byi.1 X78817 NM_001666 "CCDS14736|CCDS55540" P98171 8570618 MGI:2159577 RGD:628901 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARHGAP4 ARHGAP4 300023 +HGNC:675 ARHGAP5 Rho GTPase activating protein 5 protein-coding gene gene with protein product Approved 14q12 14q12 "RhoGAP5|p190-B|p190BRhoGAP" GFI2 growth factor independent 2 Rho GTPase activating proteins 721 1997-08-28 2015-09-11 394 ENSG00000100852 OTTHUMG00000170589 uc001wrn.3 U17032 NM_001030055 "CCDS32062|CCDS45095" Q13017 8537347 MGI:1332637 RGD:1308507 ARHGAP5 602680 +HGNC:20279 ARHGAP5-AS1 ARHGAP5 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 14q12 14q12 MGC15504 C14orf128 "chromosome 14 open reading frame 128|ARHGAP5 antisense RNA 1 (non-protein coding)|ARHGAP5 antisense RNA 1" 2003-01-17 2011-11-29 2012-10-17 2012-10-17 84837 ENSG00000258655 OTTHUMG00000170588 uc010amk.4 BC007251 NR_027263 Q96IT6 +HGNC:676 ARHGAP6 Rho GTPase activating protein 6 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 rhoGAPX-1 Rho GTPase activating proteins 721 1998-02-16 2016-10-05 395 ENSG00000047648 OTTHUMG00000021134 uc004cup.2 AF012272 NM_013427 "CCDS14140|CCDS14141|CCDS14142" O43182 9417914 MGI:1196332 RGD:2323364 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARHGAP6 ARHGAP6 300118 +HGNC:677 ARHGAP8 Rho GTPase activating protein 8 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "FLJ20185|BPGAP1" "Rho GTPase activating proteins|BCH domain containing " "721|1299" 1999-10-29 2016-10-05 23779 ENSG00000241484 OTTHUMG00000030234 uc003bfk.4 AF177331 NM_017701 "CCDS14060|CCDS33664|CCDS56233" P85298 10591208 MGI:1920417 RGD:1303143 ARHGAP8 609405 +HGNC:14130 ARHGAP9 Rho GTPase activating protein 9 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "MGC1295|10C" "Pleckstrin homology domain containing|Rho GTPase activating proteins" "682|721" 2001-02-28 2014-11-19 64333 ENSG00000123329 OTTHUMG00000150147 uc001soc.3 AB051853 NM_032496 "CCDS8941|CCDS44928|CCDS44929|CCDS81705" Q9BRR9 11396949 MGI:2143764 RGD:1305342 ARHGAP9 610576 +HGNC:26099 ARHGAP10 Rho GTPase activating protein 10 protein-coding gene gene with protein product Approved 4q31.23 04q31.23 "FLJ20896|FLJ41791|GRAF2" Rho GTPase activating proteins 721 2004-05-17 2014-11-19 79658 ENSG00000071205 OTTHUMG00000161460 uc003ilf.4 BC047914 NM_024605 CCDS34075 A1A4S6 8288572 MGI:1925764 RGD:1588859 ARHGAP10 609746 +HGNC:15783 ARHGAP11A Rho GTPase activating protein 11A protein-coding gene gene with protein product Approved 15q13.3 15q13.3 KIAA0013 GAP (1-12) Rho GTPase activating proteins 721 2004-10-04 2015-08-26 9824 ENSG00000198826 OTTHUMG00000129289 uc001zgy.2 D87717 NM_014783 "CCDS10028|CCDS58349|CCDS66730" Q6P4F7 11829490 MGI:2444300 RGD:1309107 ARHGAP11A 610589 +HGNC:15782 ARHGAP11B Rho GTPase activating protein 11B protein-coding gene gene with protein product Approved 15q13.2 15q13.2 B'-T GAP (1-8) FAM7B1 family with sequence similarity 7, member B1 Rho GTPase activating proteins 721 2004-10-04 2015-09-07 89839 ENSG00000187951 OTTHUMG00000175656 uc001zet.2 BC105788 NM_001039841 CCDS32185 Q3KRB8 "11829490|25721503" ARHGAP11B 616310 +HGNC:16348 ARHGAP12 Rho GTPase activating protein 12 protein-coding gene gene with protein product Approved 10p11.22 10p11.22 "FLJ20737|FLJ10971|FLJ21785" "Pleckstrin homology domain containing|Rho GTPase activating proteins" "682|721" 2001-08-01 2015-08-24 94134 ENSG00000165322 OTTHUMG00000017911 uc001ivz.3 AY033594 XM_017016954 "CCDS7170|CCDS59214|CCDS59215|CCDS59216|CCDS73082" Q8IWW6 11854031 MGI:1922665 RGD:1310017 ARHGAP12 610577 +HGNC:21030 ARHGAP15 Rho GTPase activating protein 15 protein-coding gene gene with protein product Approved 2q22.2-q22.3 02q22.2-q22.3 BM046 "Pleckstrin homology domain containing|Rho GTPase activating proteins" "682|721" 2003-05-07 2016-10-11 55843 ENSG00000075884 OTTHUMG00000131845 uc002tvm.5 AY219338 NM_018460 CCDS2184 Q53QZ3 "12650940|11042152" MGI:1923367 RGD:1359304 ARHGAP15 610578 +HGNC:19921 ARHGAP16P Rho GTPase activating protein 16 pseudogene pseudogene pseudogene Approved 14q21.2 14q21.2 ARHGAP15P Rho GTPase activating protein 15 pseudogene Rho GTPase activating proteins 721 2003-01-13 2003-05-07 2003-05-07 2011-07-13 319102 NG_002492 PGOHUM00000248153 +HGNC:18239 ARHGAP17 Rho GTPase activating protein 17 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "RICH1|FLJ10308|NADRIN|FLJ13219|WBP15" "Rho GTPase activating proteins|N-BAR domain containing" "721|1289" 2004-04-22 2016-10-05 55114 ENSG00000140750 OTTHUMG00000177372 uc002dnb.5 AJ306731 NM_018054 "CCDS32408|CCDS32409" Q68EM7 "10967100|11431473" MGI:1917747 RGD:628767 ARHGAP17 608293 +HGNC:21035 ARHGAP18 Rho GTPase activating protein 18 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 "MacGAP|bA307O14.2" Rho GTPase activating proteins 721 2003-05-07 2016-10-05 93663 ENSG00000146376 OTTHUMG00000015547 uc003qbr.4 AB053293 NM_033515 CCDS34535 Q8N392 MGI:1921160 RGD:1305053 ARHGAP18 613351 +HGNC:23724 ARHGAP19 Rho GTPase activating protein 19 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "FLJ00194|MGC14258" Rho GTPase activating proteins 721 2003-12-05 2016-10-05 84986 ENSG00000213390 OTTHUMG00000018845 uc001knb.4 AK074122 NM_032900 "CCDS7454|CCDS58092|CCDS73175" Q14CB8 MGI:1918335 RGD:1593044 ARHGAP19 611587 +HGNC:48348 ARHGAP19-SLIT1 ARHGAP19-SLIT1 readthrough (NMD candidate) other readthrough Approved 10q24.1 10q24.1 2013-05-10 2013-05-10 100533184 ENSG00000269891 OTTHUMG00000184018 NR_037909 +HGNC:18357 ARHGAP20 Rho GTPase activating protein 20 protein-coding gene gene with protein product Approved 11q22.3-q23.1 11q22.3-q23.1 KIAA1391 Rho GTPase activating proteins 721 2003-12-05 2016-10-11 57569 ENSG00000137727 OTTHUMG00000166590 uc001pkz.3 AB037812 NM_020809 "CCDS31673|CCDS58175|CCDS58176|CCDS58177" Q9P2F6 14532992 MGI:2445175 RGD:1303160 ARHGAP20 609568 +HGNC:23725 ARHGAP21 Rho GTPase activating protein 21 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "KIAA1424|ARHGAP10" "Pleckstrin homology domain containing|Rho GTPase activating proteins|PDZ domain containing" "682|721|1220" 2003-12-04 2016-10-05 57584 ENSG00000107863 OTTHUMG00000017825 uc001isb.2 AF480466 NM_020824 CCDS7144 Q5T5U3 12056806 MGI:1918685 RGD:1311028 ARHGAP21 609870 +HGNC:30320 ARHGAP22 Rho GTPase activating protein 22 protein-coding gene gene with protein product Approved 10q11.22-q11.23 10q11.22-q11.23 RhoGAP2 "Pleckstrin homology domain containing|Rho GTPase activating proteins" "682|721" 2004-01-29 2016-10-11 58504 ENSG00000128805 OTTHUMG00000018176 uc001jgt.5 AY324801 NM_021226 "CCDS7227|CCDS58079|CCDS58080|CCDS58081" Q7Z5H3 8619474 MGI:2443418 RGD:1307237 ARHGAP22 610585 +HGNC:42944 ARHGAP22-IT1 ARHGAP22 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 10q11.22 10q11.22 FLJ35752 ARHGAP22 intronic transcript 1 (non-protein coding) 2011-09-07 2015-02-25 2015-02-25 100689073 ENSG00000248682 OTTHUMG00000159998 uc057tdj.1 AK093071 +HGNC:29293 ARHGAP23 Rho GTPase activating protein 23 protein-coding gene gene with protein product Approved 17q12 17q12 KIAA1501 "Pleckstrin homology domain containing|Rho GTPase activating proteins|PDZ domain containing" "682|721|1220" 2004-04-06 2015-09-07 57636 ENSG00000275832 OTTHUMG00000188547 uc284ovh.1 AB040934 XM_290799 CCDS56027 Q9P227 "10819331|15254754" MGI:3697726 RGD:1309742 ARHGAP23 610590 +HGNC:45039 ARHGAP23P1 Rho GTPase activating protein 23 pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 2013-01-20 2013-01-23 102577425 ENSG00000260781 OTTHUMG00000176364 NG_033847 PGOHUM00000259060 +HGNC:25361 ARHGAP24 Rho GTPase activating protein 24 protein-coding gene gene with protein product Approved 4q21.23-q21.3 04q21.23-q21.3 "DKFZP564B1162|FLJ33877|FilGAP" "Pleckstrin homology domain containing|Rho GTPase activating proteins" "682|721" 2004-04-06 2016-10-11 83478 ENSG00000138639 OTTHUMG00000130427 uc003hpk.4 AK091196 NM_031305 "CCDS3611|CCDS34025|CCDS43246" Q8N264 "11230166|15254788" MGI:1922647 RGD:1306669 ARHGAP24 610586 285362 +HGNC:28951 ARHGAP25 Rho GTPase activating protein 25 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 KIAA0053 "Pleckstrin homology domain containing|Rho GTPase activating proteins" "682|721" 2004-04-06 2016-04-25 9938 ENSG00000163219 OTTHUMG00000152621 uc010fdg.4 D29642 NM_014882 "CCDS33214|CCDS46312|CCDS54363|CCDS54364" P42331 7584044 MGI:2443687 RGD:1562105 ARHGAP25 610587 +HGNC:17073 ARHGAP26 Rho GTPase activating protein 26 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "GRAF|KIAA0621|OPHN1L|OPHN1L1" GTPase regulator associated with the focal adhesion kinase pp125 Rho GTPase activating proteins 721 2004-05-19 2016-10-05 23092 ENSG00000145819 OTTHUMG00000059705 uc011dbj.3 AB014521 NM_015071 "CCDS4277|CCDS47297" Q9UNA1 "9858476|8649427" MGI:1918552 RGD:1310923 ARHGAP26 605370 +HGNC:40792 ARHGAP26-AS1 ARHGAP26 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q31.3 05q31.3 ARHGAP26 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100874239 ENSG00000226272 OTTHUMG00000059702 uc003lmv.4 NR_046680 +HGNC:41429 ARHGAP26-IT1 ARHGAP26 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 5q31.3 05q31.3 ARHGAP26 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874372 ENSG00000230789 OTTHUMG00000067192 uc063ifw.1 NR_046816 +HGNC:31813 ARHGAP27 Rho GTPase activating protein 27 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "CAMGAP1|FLJ43547|SH3P20" SH3D20 SH3 domain containing 20 "Pleckstrin homology domain containing|Rho GTPase activating proteins" "682|721" 2004-09-02 2014-11-18 201176 ENSG00000159314 OTTHUMG00000166982 uc032fka.1 AK125535 NM_199282 "CCDS11498|CCDS74082" Q6ZUM4 15147912 MGI:1916903 RGD:735202 ARHGAP27 610591 +HGNC:25509 ARHGAP28 Rho GTPase activating protein 28 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 "KIAA1314|FLJ10312" Rho GTPase activating proteins 721 2005-01-18 2016-10-05 79822 ENSG00000088756 OTTHUMG00000167698 uc002kne.4 BC033668 XM_371108 CCDS32785 Q9P2N2 10718198 MGI:2147003 RGD:1559882 ARHGAP28 610592 +HGNC:30207 ARHGAP29 Rho GTPase activating protein 29 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 PARG1 Rho GTPase activating proteins 721 2005-04-28 2014-11-18 9411 ENSG00000137962 OTTHUMG00000010643 uc001dqj.5 NM_004815 CCDS748 Q52LW3 9305890 MGI:2443818 RGD:1306185 ARHGAP29 610496 +HGNC:27414 ARHGAP30 Rho GTPase activating protein 30 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 FLJ00267 Rho GTPase activating proteins 721 2005-06-16 2014-11-19 257106 ENSG00000186517 OTTHUMG00000031477 uc001fxl.4 AL832852 NM_181720 "CCDS1215|CCDS30918|CCDS72958" Q7Z6I6 MGI:2684948 RGD:1561419 ARHGAP30 614264 +HGNC:29216 ARHGAP31 Rho GTPase activating protein 31 protein-coding gene gene with protein product Approved 3q13.32-q13.33 03q13.32-q13.33 CDGAP Rho GTPase activating proteins 721 2010-02-19 2016-10-11 57514 ENSG00000031081 OTTHUMG00000159362 uc003ecj.5 XM_006713714 CCDS43135 Q2M1Z3 "9786927|12819203|16519628" MGI:1333857 RGD:1306093 ARHGAP31 610911 267088 +HGNC:41235 ARHGAP31-AS1 ARHGAP31 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.33 03q13.33 ARHGAP31 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874246 ENSG00000241155 OTTHUMG00000159360 uc062mtq.1 NR_046748 +HGNC:17399 ARHGAP32 Rho GTPase activating protein 32 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "GRIT|KIAA0712|MGC1892|RICS|GC-GAP" Rho GTPase activating proteins 721 2010-02-19 2015-09-11 9743 ENSG00000134909 OTTHUMG00000165774 uc009zcp.3 AB018255 NM_014715 "CCDS31718|CCDS44769" A7KAX9 "12446789|12819203|17663722" MGI:2450166 RGD:1305267 ARHGAP32 608541 +HGNC:23085 ARHGAP33 Rho GTPase activating protein 33 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "FLJ39019|TCGAP" SNX26 sorting nexin 26 Rho GTPase activating proteins 721 2003-09-05 2010-02-19 2010-02-19 2016-10-05 115703 ENSG00000004777 OTTHUMG00000182071 uc002obs.3 AY044864 NM_052948 "CCDS12477|CCDS54254" O14559 "12297274|12461558" MGI:2673998 RGD:2318374 ARHGAP33 614902 +HGNC:4591 ARHGAP35 Rho GTPase activating protein 35 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "GRF-1|p190ARhoGAP|P190A|KIAA1722|p190RhoGAP" GRLF1 glucocorticoid receptor DNA binding factor 1 Rho GTPase activating proteins 721 1993-12-15 2011-06-07 2011-06-07 2014-11-18 2909 ENSG00000160007 OTTHUMG00000183438 uc010ekv.4 M73077 NM_004491 CCDS46127 Q9NRY4 "1894621|20675588" MGI:1929494 RGD:1308738 ARHGAP35 605277 +HGNC:26388 ARHGAP36 Rho GTPase activating protein 36 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 FLJ30058 Rho GTPase activating proteins 721 2010-03-01 2015-08-24 158763 ENSG00000147256 OTTHUMG00000022402 uc004evz.5 NM_144967 "CCDS14628|CCDS65320|CCDS83489" Q6ZRI8 MGI:1922654 RGD:1565967 ARHGAP36 300937 +HGNC:29351 ARHGAP39 Rho GTPase activating protein 39 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "KIAA1688|Vilse|CrGAP" "RhoGAP93B homolog (Drosophila)|crossGAP homolog (Drosophila)" Rho GTPase activating proteins 721 2010-04-14 2015-08-24 80728 ENSG00000147799 OTTHUMG00000165182 uc064rpe.1 XM_017013870 "CCDS34971|CCDS78374" Q9C0H5 15755809 MGI:107858 RGD:1593158 ARHGAP39 615880 +HGNC:16226 ARHGAP40 Rho GTPase activating protein 40 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 dJ1100H13.4 C20orf95 chromosome 20 open reading frame 95 Rho GTPase activating proteins 721 2001-07-17 2010-04-14 2010-04-14 2011-06-29 343578 ENSG00000124143 OTTHUMG00000032453 uc061wyy.1 AL035419 XM_293123 Q5TG30 MGI:3649852 RGD:1562428 ARHGAP40 +HGNC:26545 ARHGAP42 Rho GTPase activating protein 42 protein-coding gene gene with protein product Approved 11q22.1 11q22.1 "FLJ32810|GRAF3" Rho GTPase activating proteins 721 2010-04-28 2015-08-26 143872 ENSG00000165895 OTTHUMG00000167530 uc001pge.2 NM_152432 A6NI28 18954304 MGI:1918794 RGD:1564081 ARHGAP42 615936 +HGNC:43940 ARHGAP42P1 Rho GTPase activating protein 42 pseudogene 1 pseudogene pseudogene Approved 2q21.1 02q21.1 2012-05-11 2012-05-11 100887075 ENSG00000227817 OTTHUMG00000153560 NG_032717 PGOHUM00000240311 +HGNC:43939 ARHGAP42P2 Rho GTPase activating protein 42 pseudogene 2 pseudogene pseudogene Approved 2q21.1 02q21.1 2012-05-11 2012-05-11 100130693 ENSG00000231147 OTTHUMG00000153532 PGOHUM00000240906 +HGNC:19327 ARHGAP42P3 Rho GTPase activating protein 42 pseudogene 3 pseudogene pseudogene Approved 22q11.1 22q11.1 OPHN1P1 oligophrenin 1 pseudogene 1 2002-10-03 2012-05-11 2012-05-11 2014-11-19 266698 ENSG00000235759 OTTHUMG00000140358 NG_002375 PGOHUM00000246371 +HGNC:43941 ARHGAP42P4 Rho GTPase activating protein 42 pseudogene 4 pseudogene pseudogene Approved 14q11.2 14q11.2 2012-05-11 2012-05-11 254398 ENSG00000258080 OTTHUMG00000170557 NG_028869 PGOHUM00000248032 +HGNC:43942 ARHGAP42P5 Rho GTPase activating protein 42 pseudogene 5 pseudogene pseudogene Approved 14q11.2 14q11.2 2012-05-11 2012-05-11 100128514 ENSG00000258233 OTTHUMG00000170299 NG_028186 PGOHUM00000247695 +HGNC:29096 ARHGAP44 Rho GTPase activating protein 44 protein-coding gene gene with protein product Approved 17p12 17p12 "KIAA0672|RICH-2|RICH2" "Rho GTPase activating proteins|N-BAR domain containing" "721|1289" 2010-08-19 2015-08-26 9912 ENSG00000006740 OTTHUMG00000058765 uc002gnr.5 NM_014859 "CCDS45616|CCDS82076|CCDS82077" Q17R89 19273615 MGI:2144423 RGD:1305664 ARHGAP44 +HGNC:17102 ARHGAP45 Rho GTPase activating protein 45 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "KIAA0223|HA-1" HMHA1 histocompatibility (minor) HA-1 "Rho GTPase activating proteins|Minor histocompatibility antigens|F-BAR domain containing " "721|870|1288" 2005-12-06 2016-06-06 2016-06-06 2016-06-06 23526 ENSG00000180448 OTTHUMG00000181871 uc002lqz.4 D86976 NM_001321232 "CCDS32863|CCDS58637|CCDS74242|CCDS74243|CCDS82263" Q92619 "9820596|9039502" MGI:1917969 RGD:1308662 601155 +HGNC:678 ARHGDIA Rho GDP dissociation inhibitor alpha protein-coding gene gene with protein product Approved 17q25.3 17q25.3 RHOGDI GDIA1 Rho GDP dissociation inhibitor (GDI) alpha 1996-04-30 2016-04-01 2016-04-01 396 ENSG00000141522 OTTHUMG00000178352 uc002kbq.3 BC028333 NM_004309 "CCDS11788|CCDS58609|CCDS77133" P52565 9186513 MGI:2178103 RGD:1359547 ARHGDIA 601925 356106 +HGNC:679 ARHGDIB Rho GDP dissociation inhibitor beta protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "Ly-GDI|RhoGDI2" "RAP1GN1|GDIA2|GDID4" Rho GDP dissociation inhibitor (GDI) beta "Endogenous ligands|Minor histocompatibility antigens" "542|870" 1994-08-29 2016-04-01 2016-04-01 397 ENSG00000111348 OTTHUMG00000168742 uc001rcq.2 L07916 NM_001175 CCDS8671 P52566 "8434008|8356058" MGI:101940 RGD:1305383 ARHGDIB 602843 +HGNC:680 ARHGDIG Rho GDP dissociation inhibitor gamma protein-coding gene gene with protein product Approved 16p13.3 16p13.3 RHOGDI-3 RhoGDI gamma Rho GDP dissociation inhibitor (GDI) gamma 1997-07-11 2016-04-01 2016-04-01 398 ENSG00000242173 OTTHUMG00000064892 uc002cgm.2 U82532 NM_001176 CCDS10404 Q99819 "9113980|11967128" MGI:108430 RGD:1310739 ARHGDIG 602844 +HGNC:681 ARHGEF1 Rho guanine nucleotide exchange factor 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "P115-RHOGEF|SUB1.5|LBCL2" Rho guanine nucleotide exchange factor (GEF) 1 Rho guanine nucleotide exchange factors 722 2000-03-10 2015-11-09 2016-10-05 9138 ENSG00000076928 OTTHUMG00000182679 uc002osa.4 U64105 NM_199002 "CCDS12590|CCDS12591|CCDS12592" Q92888 "8810315|9135076" MGI:1353510 RGD:620951 ARHGEF1 601855 +HGNC:682 ARHGEF2 Rho/Rac guanine nucleotide exchange factor 2 protein-coding gene gene with protein product Approved 1q22 01q22 "LFP40|GEF-H1|KIAA0651|P40" "rho/rac guanine nucleotide exchange factor (GEF) 2|Rho/Rac guanine nucleotide exchange factor (GEF) 2" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2000-06-09 2015-11-09 2016-10-05 9181 ENSG00000116584 OTTHUMG00000017464 uc001fmr.3 AB014551 NM_004723 "CCDS1125|CCDS53375|CCDS53376" Q92974 "9857026|9734811" MGI:103264 RGD:1304659 ARHGEF2 607560 +HGNC:683 ARHGEF3 Rho guanine nucleotide exchange factor 3 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "STA3|XPLN|GEF3|DKFZP434F2429" "exchange factor found in platelets and leukemic and neuronal tissues, XPLN|RhoGEF protein" Rho guanine nucleotide exchange factor (GEF) 3 Rho guanine nucleotide exchange factors 722 2000-04-11 2015-11-09 2015-11-09 50650 ENSG00000163947 OTTHUMG00000158857 uc003dig.2 AB209661 NM_019555 "CCDS2878|CCDS46854|CCDS46855|CCDS74948" Q9NR81 10873612 MGI:1918954 RGD:1310672 ARHGEF3 612115 +HGNC:40083 ARHGEF3-AS1 ARHGEF3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.3 03p14.3 ARHGEF3 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874200 ENSG00000240198 OTTHUMG00000158863 uc031sae.2 NR_046572 +HGNC:684 ARHGEF4 Rho guanine nucleotide exchange factor 4 protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "STM6|KIAA1112|ASEF" APC-stimulated guanine nucleotide exchange factor Rho guanine nucleotide exchange factor (GEF) 4 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2000-04-11 2015-11-09 2016-10-05 50649 ENSG00000136002 OTTHUMG00000131657 uc002tsa.2 AL137289 XM_011511274 "CCDS2165|CCDS42754" Q9NR80 10873612 MGI:2442507 RGD:1586179 ARHGEF4 605216 +HGNC:13209 ARHGEF5 Rho guanine nucleotide exchange factor 5 protein-coding gene gene with protein product Approved 7q35 07q35 "TIM|TIM1|GEF5|P60" "transforming immortalized mammary oncogene|guanine nucleotide regulatory protein TIM" Rho guanine nucleotide exchange factor (GEF) 5 Rho guanine nucleotide exchange factors 722 2001-02-15 2015-11-09 2015-11-09 7984 ENSG00000050327 OTTHUMG00000158004 uc003wel.4 U02082 NM_005435 CCDS34771 Q12774 "8134109|7656213" MGI:1858952 RGD:620718 ARHGEF5 600888 +HGNC:685 ARHGEF6 Rac/Cdc42 guanine nucleotide exchange factor 6 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "alphaPIX|Cool-2|KIAA0006|alpha-PIX|Cool2" "Rac/Cdc42 guanine exchange factor (GEF) 6|PAK-interacting exchange factor, alpha|rho guanine nucleotide exchange factor 6" MRX46 "mental retardation, X-linked 46|Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6" "X-linked mental retardation|Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "103|682|722" 2000-07-27 2015-11-09 2016-10-05 9459 ENSG00000129675 OTTHUMG00000022518 uc004fab.5 D13631 NM_004840 "CCDS14660|CCDS78509" Q15052 "7584048|9659915" MGI:1920591 RGD:1359674 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARHGEF6 ARHGEF6 300267 168322 +HGNC:15607 ARHGEF7 Rho guanine nucleotide exchange factor 7 protein-coding gene gene with protein product Approved 13q34 13q34 "KIAA0142|PIXB|DKFZp761K1021|Nbla10314|DKFZp686C12170|BETA-PIX|COOL1|P85SPR|P85|P85COOL1|P50BP|PAK3|P50" "SH3 domain-containing proline-rich protein|PAK-interacting exchange factor beta" Rho guanine nucleotide exchange factor (GEF) 7 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2001-11-21 2015-11-09 2016-10-05 8874 ENSG00000102606 OTTHUMG00000017357 uc001vrr.3 D63476 NM_001113511 "CCDS9521|CCDS32009|CCDS45068|CCDS45069|CCDS81781" Q14155 "9207241|9726964" MGI:1860493 RGD:620624 ARHGEF7 605477 +HGNC:39816 ARHGEF7-AS1 ARHGEF7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 ARHGEF7 antisense RNA 1 (non-protein coding) 2011-05-05 2012-08-15 2014-11-19 100874226 ENSG00000227352 OTTHUMG00000017355 uc058yie.1 NR_046516 +HGNC:40717 ARHGEF7-AS2 ARHGEF7 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q34 13q34 ARHGEF7 antisense RNA 2 (non-protein coding) 2011-05-05 2012-08-15 2014-11-19 100874238 ENSG00000235875 OTTHUMG00000017353 uc058yhz.1 NR_046667 +HGNC:41408 ARHGEF7-IT1 ARHGEF7 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 ARHGEF7 intronic transcript 1 (non-protein coding) 2011-05-04 2015-02-25 2015-02-25 100874371 ENSG00000233644 OTTHUMG00000017354 uc058yid.1 +HGNC:14561 ARHGEF9 Cdc42 guanine nucleotide exchange factor 9 protein-coding gene gene with protein product Approved Xq11.1 Xq11.1 "KIAA0424|PEM-2" collybistin Cdc42 guanine nucleotide exchange factor (GEF) 9 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2001-02-06 2015-11-09 2015-11-09 23229 ENSG00000131089 OTTHUMG00000021700 uc064zpi.1 AB007884 XM_005262249 "CCDS35315|CCDS55429|CCDS55430|CCDS83477" O43307 "10559246|9455477" MGI:2442233 RGD:620719 ARHGEF9 300429 166055 +HGNC:41401 ARHGEF9-IT1 ARHGEF9 intronic transcript 1 non-coding RNA RNA, long non-coding Approved Xq11.1 Xq11.1 ARHGEF9 intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 100874355 ENSG00000231729 OTTHUMG00000021698 uc033egi.1 NR_138419 +HGNC:14103 ARHGEF10 Rho guanine nucleotide exchange factor 10 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 "KIAA0294|Gef10" Rho guanine nucleotide exchange factor (GEF) 10 Rho guanine nucleotide exchange factors 722 2000-12-01 2015-11-09 2016-10-12 9639 ENSG00000104728 OTTHUMG00000163626 uc003wpr.4 AF009205 XM_017014003 "CCDS34794|CCDS78296|CCDS78297" O15013 "9205841|16896804" MGI:2444453 RGD:1565043 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_234|http://www.lrg-sequence.org/LRG/LRG_234" ARHGEF10 608136 320561 +HGNC:25540 ARHGEF10L Rho guanine nucleotide exchange factor 10 like protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "FLJ10521|KIAA1626" GrinchGEF Rho guanine nucleotide exchange factor (GEF) 10-like Rho guanine nucleotide exchange factors 722 2005-06-23 2015-11-09 2015-11-09 55160 ENSG00000074964 OTTHUMG00000002514 uc001ban.4 AB046846 NM_018125 "CCDS182|CCDS30617" Q9HCE6 "10997877|16112081" MGI:1920004 RGD:1585585 ARHGEF10L 612494 +HGNC:14580 ARHGEF11 Rho guanine nucleotide exchange factor 11 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "KIAA0380|GTRAP48|PDZ-RHOGEF" Rho guanine nucleotide exchange factor (GEF) 11 "Rho guanine nucleotide exchange factors|PDZ domain containing" "722|1220" 2001-02-08 2015-11-09 2016-10-05 9826 ENSG00000132694 OTTHUMG00000041292 uc001fqn.3 AB002378 NM_198236 "CCDS1162|CCDS1163" O15085 "10526156|9205841" MGI:2441869 RGD:619705 ARHGEF11 605708 +HGNC:14193 ARHGEF12 Rho guanine nucleotide exchange factor 12 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "KIAA0382|LARG" Rho guanine nucleotide exchange factor (GEF) 12 "Rho guanine nucleotide exchange factors|PDZ domain containing" "722|1220" 2000-12-07 2015-11-09 2015-11-09 23365 ENSG00000196914 OTTHUMG00000166143 uc001pxl.3 AF180681 NM_015313 "CCDS41727|CCDS55794|CCDS76487" Q9NZN5 "10681437|9205841" MGI:1916882 RGD:1305111 ARHGEF12 604763 +HGNC:15590 ARHGEF15 Rho guanine nucleotide exchange factor 15 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "KIAA0915|Vsm-RhoGEF|ARGEF15|FLJ13791|MGC44868" Rho guanine exchange factor (GEF) 15 Rho guanine nucleotide exchange factor (GEF) 15 Rho guanine nucleotide exchange factors 722 2001-04-26 2015-11-09 2015-11-09 22899 ENSG00000198844 OTTHUMG00000108187 uc002glc.4 AB020722 NM_173728 CCDS11139 O94989 10048485 MGI:3045246 RGD:1306961 ARHGEF15 608504 +HGNC:15515 ARHGEF16 Rho guanine nucleotide exchange factor 16 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "NBR|GEF16" putative neuroblastoma protein Rho guanine nucleotide exchange factor (GEF) 16 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2001-04-06 2015-11-09 2016-10-05 27237 ENSG00000130762 OTTHUMG00000000625 uc001akg.5 D89016 NM_014448 CCDS46 Q5VV41 MGI:2446219 RGD:1588981 ARHGEF16 +HGNC:21726 ARHGEF17 Rho guanine nucleotide exchange factor 17 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "TEM4|KIAA0337|p164-RhoGEF" "Rho-specific guanine-nucleotide exchange factor 164 kDa|tumor endothelial marker 4" Rho guanine nucleotide exchange factor (GEF) 17 Rho guanine nucleotide exchange factors 722 2003-09-25 2015-11-09 2016-10-05 9828 ENSG00000110237 OTTHUMG00000167971 uc001otu.4 AF378754 NM_014786 CCDS8221 Q96PE2 "11559528|12071859" MGI:2673002 RGD:1309890 ARHGEF17 617043 +HGNC:17090 ARHGEF18 Rho/Rac guanine nucleotide exchange factor 18 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "P114-RhoGEF|KIAA0521|MGC15913" Rho-specific guanine nucleotide exchange factor p114 "rho/rac guanine nucleotide exchange factor (GEF) 18|Rho/Rac guanine nucleotide exchange factor (GEF) 18" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2004-01-09 2015-11-09 2016-10-04 23370 ENSG00000104880 OTTHUMG00000177342 uc002mgh.4 AK074372 NM_015318 "CCDS12177|CCDS45946" Q6ZSZ5 "9628581|11318610" MGI:2142567 RGD:1311448 ARHGEF18 616432 +HGNC:26604 ARHGEF19 Rho guanine nucleotide exchange factor 19 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "FLJ33962|WGEF" Rho guanine nucleotide exchange factor (GEF) 19 Rho guanine nucleotide exchange factors 722 2004-03-05 2015-11-09 2015-11-09 128272 ENSG00000142632 OTTHUMG00000002219 uc001ayc.1 BC012982 NM_153213 CCDS170 Q8IW93 12477932 MGI:1925912 RGD:1304766 ARHGEF19 612496 +HGNC:39996 ARHGEF19-AS1 ARHGEF19 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.13 01p36.13 ARHGEF19 antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100874233 ENSG00000234166 OTTHUMG00000002220 uc057cqq.1 +HGNC:30275 ARHGEF25 Rho guanine nucleotide exchange factor 25 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "GEFT|p63RhoGEF" RAC/CDC42 exchange factor Rho guanine nucleotide exchange factor (GEF) 25 Rho guanine nucleotide exchange factors 722 2010-09-02 2015-11-09 2015-11-09 115557 ENSG00000240771 OTTHUMG00000152516 uc009zpy.5 NM_133483 "CCDS8947|CCDS44931" Q86VW2 12547822 MGI:1277173 RGD:735210 ARHGEF25 610215 +HGNC:24490 ARHGEF26 Rho guanine nucleotide exchange factor 26 protein-coding gene gene with protein product Approved 3q25.2 03q25.2 "DKFZP434D146|SGEF" Src homology 3 domain-containing guanine nucleotide exchange factor Rho guanine nucleotide exchange factor (GEF) 26 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2010-08-20 2015-11-09 2015-11-09 26084 ENSG00000114790 OTTHUMG00000159098 uc021xgc.1 BC016628 NM_015595 "CCDS46938|CCDS58858" Q96DR7 "15133129|12697679" MGI:1918053 RGD:1562559 ARHGEF26 +HGNC:41048 ARHGEF26-AS1 ARHGEF26 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.2 03q25.2 ARHGEF26 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100507524 ENSG00000243069 OTTHUMG00000159647 uc003ezu.1 NR_037901 +HGNC:30322 ARHGEF28 Rho guanine nucleotide exchange factor 28 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "RGNEF|p190RhoGEF|RIP2" Rho guanine nucleotide exchange factor (GEF) 28 2012-08-08 2015-11-09 2016-04-25 64283 ENSG00000214944 OTTHUMG00000162454 uc010izf.4 XM_011543547 "CCDS47231|CCDS54870|CCDS58957" Q8N1W1 "9199174|11058585" MGI:1346016 RGD:1307061 612790 +HGNC:37252 ARHGEF33 Rho guanine nucleotide exchange factor 33 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 Rho guanine nucleotide exchange factor (GEF) 33 Rho guanine nucleotide exchange factors 722 2010-04-13 2015-11-09 2016-04-25 100271715 ENSG00000214694 OTTHUMG00000153540 uc021vgd.2 NM_001145451 CCDS46263 A8MVX0 MGI:2685787 RGD:1560224 ARHGEF33 +HGNC:38086 ARHGEF34P Rho guanine nucleotide exchange factor 34, pseudogene pseudogene pseudogene Approved 7q35 07q35 Rho guanine nucleotide exchange factor (GEF) 34, pseudogene Rho guanine nucleotide exchange factors 722 2013-05-09 2015-11-09 2015-11-09 728377 ENSG00000204959 OTTHUMG00000158008 NR_033942 PGOHUM00000250918 +HGNC:33846 ARHGEF35 Rho guanine nucleotide exchange factor 35 protein-coding gene gene with protein product Approved 7q35 07q35 "FLJ43692|CTAGE4" ARHGEF5L "Rho guanine nucleotide exchange factor (GEF) 5-like|Rho guanine nucleotide exchange factor (GEF) 35" Rho guanine nucleotide exchange factors 722 2009-04-02 2010-04-13 2015-11-09 2015-11-09 445328 ENSG00000213214 OTTHUMG00000158010 uc003wdz.3 AK125680 NM_001003702 CCDS34770 A5YM69 ARHGEF35 +HGNC:34430 ARHGEF37 Rho guanine nucleotide exchange factor 37 protein-coding gene gene with protein product Approved 5q32 05q32 FLJ41603 Rho guanine nucleotide exchange factor (GEF) 37 "Rho guanine nucleotide exchange factors|Classical BAR domain containing" "722|1292" 2010-04-13 2015-11-09 2016-10-05 389337 ENSG00000183111 OTTHUMG00000163491 uc003lra.2 BC041325 NM_001001669 CCDS43385 A1IGU5 MGI:3045339 RGD:1560471 ARHGEF37 +HGNC:25968 ARHGEF38 Rho guanine nucleotide exchange factor 38 protein-coding gene gene with protein product Approved 4q24 04q24 FLJ20184 Rho guanine nucleotide exchange factor (GEF) 38 "Rho guanine nucleotide exchange factors|Classical BAR domain containing" "722|1292" 2010-04-13 2015-11-09 2015-11-09 54848 ENSG00000236699 OTTHUMG00000154752 uc003hxv.3 AK000191 NM_017700 "CCDS3670|CCDS56338" Q9NXL2 MGI:1924919 RGD:1311728 ARHGEF38 +HGNC:41483 ARHGEF38-IT1 ARHGEF38 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 4q24 04q24 ARHGEF38 intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 100874374 ENSG00000249885 OTTHUMG00000161056 uc031sgs.2 NR_046840 +HGNC:25909 ARHGEF39 Rho guanine nucleotide exchange factor 39 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 FLJ14642 C9orf100 "chromosome 9 open reading frame 100|Rho guanine nucleotide exchange factor (GEF) 39" 2004-03-11 2012-08-08 2015-11-09 2015-11-09 84904 ENSG00000137135 OTTHUMG00000019869 uc003zxm.2 AK001187 NM_032818 CCDS6584 Q8N4T4 22327280 MGI:3036286 RGD:1310376 +HGNC:25516 ARHGEF40 Rho guanine nucleotide exchange factor 40 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "solo|FLJ10357" Rho guanine nucleotide exchange factor (GEF) 40 Rho guanine nucleotide exchange factors 722 2010-09-01 2015-11-09 2015-11-09 55701 ENSG00000165801 OTTHUMG00000171359 uc001vzp.5 XM_011536937 CCDS32041 Q8TER5 16143467 MGI:2685515 RGD:1308093 ARHGEF40 610018 +HGNC:11110 ARID1A AT-rich interaction domain 1A protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "B120|P270|C10rf4|BAF250|BAF250a" "C1orf4|SMARCF1" "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily f, member 1|AT rich interactive domain 1A (SWI- like)|AT rich interactive domain 1A (SWI-like)" AT-rich interaction domain containing 418 2000-06-26 2004-01-30 2015-11-17 2016-10-12 8289 ENSG00000117713 OTTHUMG00000004004 uc001bmv.2 AB001895 NM_139135 "CCDS285|CCDS44091" O14497 "9630625|9434167" MGI:1935147 RGD:1310500 LRG_875|http://www.lrg-sequence.org/LRG/LRG_875 ARID1A 603024 293103 +HGNC:18040 ARID1B AT-rich interaction domain 1B protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "KIAA1235|ELD/OSA1|p250R|BAF250b|DAN15|6A3-5" AT rich interactive domain 1B (SWI1-like) AT-rich interaction domain containing 418 2004-01-28 2015-11-17 2016-10-12 57492 ENSG00000049618 OTTHUMG00000015890 uc003qqp.4 AF521671 NM_020732 "CCDS5251|CCDS55072" Q8NFD5 MGI:1926129 RGD:708504 LRG_861|http://www.lrg-sequence.org/LRG/LRG_861 ARID1B 614556 293095 +HGNC:18037 ARID2 AT-rich interaction domain 2 protein-coding gene gene with protein product Approved 12q12 12q12 "KIAA1557|DKFZp686G052|FLJ30619|BAF200" AT rich interactive domain 2 (ARID, RFX-like) AT-rich interaction domain containing 418 2004-01-28 2015-11-17 2016-10-05 196528 ENSG00000189079 OTTHUMG00000150487 uc001ros.2 XM_350875 CCDS31783 Q68CP9 MGI:1924294 RGD:1311105 ARID2 609539 +HGNC:3031 ARID3A AT-rich interaction domain 3A protein-coding gene gene with protein product Approved 19p13.3 19p13.3 BRIGHT DRIL1 "dead ringer-like 1 (Drosophila)|AT rich interactive domain 3A (BRIGHT- like)|AT rich interactive domain 3A (BRIGHT-like)" AT-rich interaction domain containing 418 1997-08-22 2004-01-30 2015-11-17 2015-11-17 1820 ENSG00000116017 OTTHUMG00000182018 uc002lql.4 U88047 NM_005224 CCDS12050 Q99856 9722953 MGI:1328360 RGD:1305299 ARID3A 603265 +HGNC:14350 ARID3B AT-rich interaction domain 3B protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "BDP|DRIL2" "AT rich interactive domain 3B (BRIGHT- like)|AT rich interactive domain 3B (BRIGHT-like)" AT-rich interaction domain containing 418 2004-01-28 2015-11-17 2016-10-05 10620 ENSG00000179361 OTTHUMG00000141321 uc002ayd.4 NM_006465 "CCDS10264|CCDS76777" Q8IVW6 MGI:1930768 RGD:1306335 ARID3B 612457 +HGNC:21209 ARID3C AT-rich interaction domain 3C protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "AT rich interactive domain 3C (BRIGHT- like)|AT rich interactive domain 3C (BRIGHT-like)" AT-rich interaction domain containing 418 2004-01-28 2015-11-17 2016-10-05 138715 ENSG00000205143 OTTHUMG00000000445 uc011lon.3 XM_071061 CCDS35006 A6NKF2 MGI:3650624 RGD:1560943 ARID3C +HGNC:9885 ARID4A AT-rich interaction domain 4A protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "RBP1|RBP-1" RBBP1 "retinoblastoma-binding protein 1|AT rich interactive domain 4A (RBP1-like)" AT-rich interaction domain containing 418 1992-09-17 2004-01-28 2015-11-17 2016-10-05 5926 ENSG00000032219 OTTHUMG00000140320 uc001xdp.4 S57153 NM_023001 "CCDS9732|CCDS9733|CCDS45114" P29374 "1857421|8455946" MGI:2444354 RGD:1307442 ARID4A 180201 +HGNC:15550 ARID4B AT-rich interaction domain 4B protein-coding gene gene with protein product Approved 1q42.3 01q42.3 "BCAA|BRCAA1|SAP180" RBP1L1 "retinoblastoma binding protein 1-like 1|AT rich interactive domain 4B (RBP1- like)|AT rich interactive domain 4B (RBP1-like)" AT-rich interaction domain containing 418 2003-05-28 2004-01-30 2015-11-17 2015-11-17 51742 ENSG00000054267 OTTHUMG00000039621 uc001hwq.3 AF214114 NM_016374 "CCDS31060|CCDS31061" Q4LE39 11481388 MGI:2137512 RGD:619919 ARID4B 609696 +HGNC:41407 ARID4B-IT1 ARID4B intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q42.3 01q42.3 ARID4B intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874336 OTTHUMG00000039623 +HGNC:17361 ARID5A AT-rich interaction domain 5A protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "MRF-1|RP11-363D14" modulator recognition factor 1 AT rich interactive domain 5A (MRF1-like) AT-rich interaction domain containing 418 2004-01-28 2015-11-17 2016-10-05 10865 ENSG00000196843 OTTHUMG00000155229 uc002swe.4 M62324 NM_212481 "CCDS33251|CCDS82484" Q03989 8649988 MGI:2443039 RGD:1311041 ARID5A 611583 +HGNC:17362 ARID5B AT-rich interaction domain 5B protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "FLJ21150|MRF2" AT rich interactive domain 5B (MRF1-like) AT-rich interaction domain containing 418 2004-01-28 2015-11-17 2016-10-05 84159 ENSG00000150347 OTTHUMG00000018298 uc001jlt.3 M73837 XM_084482 "CCDS31208|CCDS58082" Q14865 "11483573|11478881" MGI:2175912 RGD:1311735 ARID5B 608538 +HGNC:689 ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "HARI|HHARI|UBCH7BP|ARI" ariadne, Drosophila, homolog of "ariadne (Drosophila) homolog, ubiquitin-conjugating enzyme E2-binding protein, 1|ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)" 2000-08-24 2013-10-03 2016-10-05 25820 ENSG00000166233 OTTHUMG00000133474 uc002aut.5 AF072832 NM_005744 CCDS10244 Q9Y4X5 "10521492|24058416" MGI:1344363 RGD:1308131 ARIH1 605624 +HGNC:690 ARIH2 ariadne RBR E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 TRIAD1 all-trans retinoic acid inducible RING finger "ariadne (Drosophila) homolog 2|ariadne homolog 2 (Drosophila)" 2000-08-24 2013-10-03 2016-10-05 10425 ENSG00000177479 OTTHUMG00000133547 uc003cvb.4 AF099149 NM_006321 CCDS2780 O95376 "10422847|24058416" MGI:1344361 RGD:1305839 ARIH2 605615 +HGNC:34425 ARIH2OS ariadne homolog 2 opposite strand protein-coding gene gene with protein product Approved 3p21.31 03p21.31 C3orf71 chromosome 3 open reading frame 71 2008-07-08 2012-10-08 2012-10-08 2014-11-19 646450 ENSG00000221883 OTTHUMG00000156672 uc010hkk.1 DA461567 NM_001123040 CCDS43088 Q8N7S6 MGI:3642291 RGD:11443615 +HGNC:31732 ARIH2P1 ariadne RBR E3 ubiquitin protein ligase 2 pseudogene 1 pseudogene pseudogene Approved 18q12.1 18q12.1 ARIH2P "ariadne homolog 2 pseudogene|ariadne homolog 2 pseudogene 1" 2008-01-31 2010-01-12 2015-06-26 2015-06-26 390844 ENSG00000266296 OTTHUMG00000179464 XR_016965 +HGNC:692 ARL1 ADP ribosylation factor like GTPase 1 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 ARFL1 ADP-ribosylation factor-like 1 ARF GTPase family 357 1994-04-14 2015-11-19 2015-11-19 400 ENSG00000120805 OTTHUMG00000170271 uc001tib.4 BX537387 NM_001177 "CCDS44958|CCDS73510" P40616 "8798635|19224922" MGI:99436 RGD:621326 ARL1 603425 +HGNC:693 ARL2 ADP ribosylation factor like GTPase 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 ARFL2 ADP-ribosylation factor-like 2 ARF GTPase family 357 1994-04-13 2015-11-19 2016-10-05 402 ENSG00000213465 OTTHUMG00000165728 uc001och.5 AF493888 NM_001667 "CCDS8088|CCDS55770" P36404 "8415637|9253601" MGI:1928393 RGD:69326 ARL2 601175 +HGNC:49197 ARL2-SNX15 ARL2-SNX15 readthrough (NMD candidate) other readthrough Approved 11q13.1 11q13.1 2013-09-30 2013-09-30 100528018 ENSG00000273003 OTTHUMG00000185851 NR_037650 +HGNC:17146 ARL2BP ADP ribosylation factor like GTPase 2 binding protein protein-coding gene gene with protein product Approved 16q13 16q13 "BART1|BART" binder of Arl2 RP66 "retinitis pigmentosa 66 (autosomal recessive)|ADP-ribosylation factor-like 2 binding protein" 2004-02-12 2015-11-19 2015-11-19 23568 ENSG00000102931 OTTHUMG00000133459 uc002elf.2 AF126062 NM_012106 CCDS10776 Q9Y2Y0 "10488091|18981177|23849777" MGI:1349429 RGD:1561471 ARL2BP 615407 363162 +HGNC:17742 ARL2BPP1 ADP ribosylation factor like GTPase 2 binding protein pseudogene 1 pseudogene pseudogene Approved 18q23 18q23 HsT2883 ADP-ribosylation factor-like 2 binding protein pseudogene 1 2004-02-12 2015-11-19 2015-11-19 399666 ENSG00000265934 OTTHUMG00000179327 NG_028708 PGOHUM00000234960 +HGNC:31036 ARL2BPP2 ADP ribosylation factor like GTPase 2 binding protein pseudogene 2 pseudogene pseudogene Approved 12q13.13 12q13.13 bcm1040 ARL2BPL "ADP-ribosylation factor-like 2 binding protein-like|ADP-ribosylation factor-like 2 binding protein pseudogene 2" 2004-02-12 2011-01-14 2015-11-19 2015-11-19 643898 ENSG00000258071 OTTHUMG00000169796 NG_030318 PGOHUM00000239787 +HGNC:39447 ARL2BPP3 ADP ribosylation factor like GTPase 2 binding protein pseudogene 3 pseudogene pseudogene Approved 13q13.3 13q13.3 ADP-ribosylation factor-like 2 binding protein pseudogene 3 2011-01-14 2015-11-19 2015-11-19 646879 ENSG00000215486 OTTHUMG00000016739 NG_022943 PGOHUM00000248568 +HGNC:39448 ARL2BPP4 ADP ribosylation factor like GTPase 2 binding protein pseudogene 4 pseudogene pseudogene Approved 5q23.3 05q23.3 ADP-ribosylation factor-like 2 binding protein pseudogene 4 2011-01-14 2015-11-19 2015-11-19 100130265 ENSG00000249312 OTTHUMG00000163039 NG_028952 PGOHUM00000235752 +HGNC:39449 ARL2BPP5 ADP ribosylation factor like GTPase 2 binding protein pseudogene 5 pseudogene pseudogene Approved 5q34 05q34 ADP-ribosylation factor-like 2 binding protein pseudogene 5 2011-01-14 2015-11-19 2015-11-19 100874420 ENSG00000254351 OTTHUMG00000163550 NG_032305 PGOHUM00000235825 +HGNC:39450 ARL2BPP6 ADP ribosylation factor like GTPase 2 binding protein pseudogene 6 pseudogene pseudogene Approved 5q35.2 05q35.2 ADP-ribosylation factor-like 2 binding protein pseudogene 6 2011-01-14 2015-11-19 2015-11-19 100874421 ENSG00000248355 OTTHUMG00000163133 NG_032306 PGOHUM00000235842 +HGNC:39451 ARL2BPP7 ADP ribosylation factor like GTPase 2 binding protein pseudogene 7 pseudogene pseudogene Approved 9q31.1 09q31.1 ADP-ribosylation factor-like 2 binding protein pseudogene 7 2011-01-14 2015-11-19 2015-11-19 100131629 ENSG00000230418 OTTHUMG00000020390 NG_028958 PGOHUM00000236291 +HGNC:39452 ARL2BPP8 ADP ribosylation factor like GTPase 2 binding protein pseudogene 8 pseudogene pseudogene Approved 17q22 17q22 ADP-ribosylation factor-like 2 binding protein pseudogene 8 2011-01-14 2015-11-19 2015-11-19 100131784 ENSG00000263125 OTTHUMG00000177815 NG_028975 PGOHUM00000237111 +HGNC:39453 ARL2BPP9 ADP ribosylation factor like GTPase 2 binding protein pseudogene 9 pseudogene pseudogene Approved 17q25.3 17q25.3 ADP-ribosylation factor-like 2 binding protein pseudogene 9 2011-01-14 2015-11-19 2015-11-19 100421675 NG_026204 PGOHUM00000237189 +HGNC:39454 ARL2BPP10 ADP ribosylation factor like GTPase 2 binding protein pseudogene 10 pseudogene pseudogene Approved 22q11.21 22q11.21 ADP-ribosylation factor-like 2 binding protein pseudogene 10 2011-01-14 2015-11-19 2015-11-19 100874449 ENSG00000225225 OTTHUMG00000155640 NG_032307 PGOHUM00000246217 +HGNC:694 ARL3 ADP ribosylation factor like GTPase 3 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 ARFL3 ADP-ribosylation factor-like 3 ARF GTPase family 357 1994-04-14 2015-11-19 2016-10-05 403 ENSG00000138175 OTTHUMG00000018965 uc001kwa.4 U07151 NM_004311 CCDS7538 P36405 "8034651|10072593" MGI:1929699 RGD:69327 ARL3 604695 +HGNC:695 ARL4A ADP ribosylation factor like GTPase 4A protein-coding gene gene with protein product Approved 7p21.3 07p21.3 ARL4 "ADP-ribosylation factor-like 4|ADP-ribosylation factor-like 4A" ARF GTPase family 357 1999-06-02 2005-11-03 2015-11-19 2015-11-19 10124 ENSG00000122644 OTTHUMG00000023374 uc003sss.4 U73960 NM_005738 CCDS5359 P40617 22159419 MGI:99437 RGD:2152 ARL4A 604786 +HGNC:17741 ARL4AP1 ADP ribosylation factor like GTPase 4A pseudogene 1 pseudogene pseudogene Approved 10q21.2 10q21.2 Em:AC022390.2 similar to ADP-ribosylation factor-like protein 4 "ARL4B|ARL4P" "ADP-ribosylation factor-like 4B|ADP-ribosylation factor-like 4 pseudogene|ADP-ribosylation factor-like 4A pseudogene 1" 2004-05-27 2015-10-15 2015-11-19 2016-08-18 387684 ENSG00000122872 OTTHUMG00000018289 XM_370560 PGOHUM00000290174 +HGNC:32379 ARL4AP2 ADP ribosylation factor like GTPase 4A pseudogene 2 pseudogene pseudogene Approved 4p14 04p14 ARL4P2 "ADP-ribosylation factor-like 4 pseudogene 2|ADP-ribosylation factor-like 4A pseudogene 2" 2005-11-07 2015-10-15 2015-11-19 2015-11-19 152709 ENSG00000248780 OTTHUMG00000160406 NG_005394 +HGNC:52372 ARL4AP3 ADP ribosylation factor like GTPase 4A pseudogene 3 pseudogene pseudogene Approved 10p15.1 10p15.1 2016-08-18 2016-08-18 107984161 ENSG00000228291 OTTHUMG00000017589 PGOHUM00000290038 +HGNC:52373 ARL4AP4 ADP ribosylation factor like GTPase 4A pseudogene 4 pseudogene pseudogene Approved 3p24.2 03p24.2 2016-08-18 2016-08-18 100420471 ENSG00000231395 OTTHUMG00000155579 NG_025557 PGOHUM00000298971 +HGNC:52374 ARL4AP5 ADP ribosylation factor like GTPase 4A pseudogene 5 pseudogene pseudogene Approved 6q25.1 06q25.1 2016-08-18 2016-08-18 101928788 ENSG00000218996 OTTHUMG00000015826 PGOHUM00000301991 +HGNC:698 ARL4C ADP ribosylation factor like GTPase 4C protein-coding gene gene with protein product Approved 2q37.1 02q37.1 LAK ARL7 "ADP-ribosylation factor-like 7|ADP-ribosylation factor-like 4C" ARF GTPase family 357 1999-06-02 2005-11-03 2015-11-19 2016-10-05 10123 ENSG00000188042 OTTHUMG00000133291 uc002vvn.5 AB016811 NM_005737 "CCDS2512|CCDS63169" P56559 10462049 MGI:2445172 RGD:1589685 ARL4C 604787 +HGNC:656 ARL4D ADP ribosylation factor like GTPase 4D protein-coding gene gene with protein product Approved 17q21.31 17q21.31 ARF4L "ADP-ribosylation factor 4-like|ADP-ribosylation factor-like 4D" ARF GTPase family 357 1995-08-23 2005-11-03 2015-11-19 2015-11-19 379 ENSG00000175906 OTTHUMG00000180881 uc002idt.4 AB060692 NM_001661 CCDS11463 P49703 "7590735|22927989" MGI:1933155 RGD:1306875 ARL4D 600732 +HGNC:696 ARL5A ADP ribosylation factor like GTPase 5A protein-coding gene gene with protein product Approved 2q23.3 02q23.3 ARL5 "ADP-ribosylation factor-like 5|ADP-ribosylation factor-like 5A" ARF GTPase family 357 1999-11-26 2005-11-03 2015-11-19 2015-11-19 26225 ENSG00000162980 OTTHUMG00000131887 uc002txx.2 AF100740 NM_012097 "CCDS2195|CCDS46425" Q9Y689 15896705 MGI:1922673 RGD:621327 ARL5A 608960 +HGNC:43933 ARL5AP1 ADP ribosylation factor like GTPase 5A pseudogene 1 pseudogene pseudogene Approved Xq24 Xq24 ADP-ribosylation factor-like 5A pseudogene 1 2012-05-10 2015-11-19 2015-11-19 641382 ENSG00000227864 OTTHUMG00000022265 NG_005344 PGOHUM00000241514 +HGNC:43937 ARL5AP2 ADP ribosylation factor like GTPase 5A pseudogene 2 pseudogene pseudogene Approved 10q24.2 10q24.2 ADP-ribosylation factor-like 5A pseudogene 2 2012-05-10 2015-11-19 2015-11-19 641380 ENSG00000236818 OTTHUMG00000018878 NG_005342 PGOHUM00000238605 +HGNC:43935 ARL5AP3 ADP ribosylation factor like GTPase 5A pseudogene 3 pseudogene pseudogene Approved 1p31.3 01p31.3 ADP-ribosylation factor-like 5A pseudogene 3 2012-05-10 2015-11-19 2015-11-19 106480778 ENSG00000228431 OTTHUMG00000057527 NG_045675 PGOHUM00000244062 +HGNC:43936 ARL5AP4 ADP ribosylation factor like GTPase 5A pseudogene 4 pseudogene pseudogene Approved 22q11.23 22q11.23 ADP-ribosylation factor-like 5A pseudogene 4 2012-05-10 2015-11-19 2015-11-19 641379 ENSG00000224806 OTTHUMG00000155636 NG_005341 PGOHUM00000246542 +HGNC:23052 ARL5B ADP ribosylation factor like GTPase 5B protein-coding gene gene with protein product Approved 10p12.31 10p12.31 ARL8 "ADP-ribosylation factor-like 8|ADP-ribosylation factor-like 5B" ARF GTPase family 357 2003-08-27 2005-11-03 2015-11-19 2016-10-05 221079 ENSG00000165997 OTTHUMG00000017765 uc001iqd.2 AF494061 NM_178815 CCDS7131 Q96KC2 "12853149|22245584" MGI:1923119 RGD:1305569 ARL5B 608909 +HGNC:31111 ARL5C ADP ribosylation factor like GTPase 5C protein-coding gene gene with protein product Approved 17q12 17q12 ARL12 "ADP-ribosylation factor-like 12|ADP-ribosylation factor-like 5C" ARF GTPase family 357 2004-02-17 2005-11-08 2015-11-19 2015-11-19 390790 ENSG00000141748 OTTHUMG00000179048 uc010wea.3 NM_001143968 CCDS45664 A6NH57 MGI:3028577 RGD:1563128 ARL5C +HGNC:13210 ARL6 ADP ribosylation factor like GTPase 6 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 RP55 BBS3 ADP-ribosylation factor-like 6 "ARF GTPase family|Bardet-Biedl syndrome associated" "357|980" 2004-08-18 2015-11-19 2015-11-19 84100 ENSG00000113966 OTTHUMG00000159189 uc010hoy.6 BC024239 NM_032146 CCDS2928 Q9H0F7 "15258860|15314642|21282186" MGI:1927136 RGD:1305535 ARL6 608845 121421 +HGNC:697 ARL6IP1 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "AIP1|ARMER|KIAA0069|SPG61" ARL6IP "ADP-ribosylation factor-like 6 interacting protein|ADP-ribosylation factor-like 6 interacting protein 1" 2000-06-16 2006-09-26 2015-11-19 2016-10-05 23204 ENSG00000170540 OTTHUMG00000131367 uc002dfl.2 BC010281 NM_015161 "CCDS10572|CCDS81951" Q15041 24482476 MGI:1858943 RGD:735205 ARL6IP1 607669 403310 +HGNC:23178 ARL6IP1P1 ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 ARL6IPP1 "ADP-ribosylation factor-like 6 interacting protein pseudogene 1|ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 1" 2003-09-30 2009-12-17 2015-11-19 2015-11-19 100288702 ENSG00000255664 OTTHUMG00000168891 NG_022838 +HGNC:44971 ARL6IP1P2 ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 2 pseudogene pseudogene Approved 10p11.21 10p11.21 ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 2 2012-12-20 2015-11-19 2015-11-19 646348 ENSG00000225355 OTTHUMG00000017967 NG_022169 PGOHUM00000258514 +HGNC:44972 ARL6IP1P3 ADP ribosylation factor like GTPase 6 interacting protein 1 pseudogene 3 pseudogene pseudogene Approved 11q14.1 11q14.1 ADP-ribosylation factor-like 6 interacting protein 1 pseudogene 3 2012-12-20 2015-11-19 2015-11-19 729790 ENSG00000255014 OTTHUMG00000166792 NG_021793 PGOHUM00000258573 +HGNC:18076 ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "SR-25|SRp25|SFRS20|SRrp37" "SRp25 nuclear protein|splicing factor, arginine/serine-rich 20" "ADP-ribosylation-like factor 6 interacting protein 4|ADP-ribosylation factor-like 6 interacting protein 4" 2002-09-18 2015-11-19 2016-04-25 51329 ENSG00000182196 OTTHUMG00000168779 uc001uee.4 AB035384 NM_018694 "CCDS31923|CCDS41856|CCDS45004|CCDS53843|CCDS61273" Q66PJ3 "10708573|11884129" MGI:1929500 RGD:1307657 ARL6IP4 607668 +HGNC:16937 ARL6IP5 ADP ribosylation factor like GTPase 6 interacting protein 5 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "PRAF3|JWA|GTRAP3-18|DERP11|HSPC127|Yip6b" PRA1 domain family 3 ADP-ribosylation factor-like 6 interacting protein 5 YIP family 1144 2004-09-01 2015-11-19 2016-10-05 10550 ENSG00000144746 OTTHUMG00000158773 uc003dnr.4 AF070523 NM_006407 CCDS2912 O75915 "11242046|11042152" MGI:1929501 RGD:708572 ARL6IP5 605709 +HGNC:24048 ARL6IP6 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding gene gene with protein product Approved 2q23.3 02q23.3 MGC33864 ADP-ribosylation factor-like 6 interacting protein 6 2004-11-29 2015-11-19 2016-10-05 151188 ENSG00000177917 OTTHUMG00000131901 uc002tyn.4 AK023109 NM_152522 CCDS2197 Q8N6S5 MGI:1929507 RGD:1564819 ARL6IP6 616495 +HGNC:25192 ARL8A ADP ribosylation factor like GTPase 8A protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "FLJ45195|Gie2" ARL10B "ADP-ribosylation factor-like 10B|ADP-ribosylation factor-like 8A" ARF GTPase family 357 2004-02-05 2005-11-03 2015-11-19 2015-11-19 127829 ENSG00000143862 OTTHUMG00000035923 uc001gxk.3 BC015408 NM_138795 "CCDS1421|CCDS73004" Q96BM9 8889548 MGI:1915974 RGD:1565940 ARL8A 616597 +HGNC:25564 ARL8B ADP ribosylation factor like GTPase 8B protein-coding gene gene with protein product Approved 3p26.1 03p26.1 "FLJ10702|Gie1" ARL10C "ADP-ribosylation factor-like 10C|ADP-ribosylation factor-like 8B" ARF GTPase family 357 2004-02-05 2005-11-03 2015-11-19 2015-11-19 55207 ENSG00000134108 OTTHUMG00000090463 uc003bqg.4 AK001564 NM_018184 CCDS2566 Q9NVJ2 "12477932|24088571" MGI:1914416 RGD:1562830 ARL8B 616596 +HGNC:23592 ARL9 ADP ribosylation factor like GTPase 9 protein-coding gene gene with protein product Approved 4q12 04q12 ADP-ribosylation factor like GTPase 9 ARF GTPase family 357 2003-11-25 2015-12-17 2015-12-17 132946 ENSG00000196503 OTTHUMG00000184000 uc003hby.2 AY439003 NM_206919 CCDS59474 Q6T311 MGI:1915496 RGD:1303337 ARL9 612405 +HGNC:22042 ARL10 ADP ribosylation factor like GTPase 10 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 ARL10A "ADP-ribosylation factor-like 10A|ADP-ribosylation factor like GTPase 10" ARF GTPase family 357 2003-12-11 2005-11-03 2015-12-17 2016-10-05 285598 ENSG00000175414 OTTHUMG00000130655 uc003mec.2 BK001673 NM_173664 CCDS4400 Q8N8L6 MGI:1930788 RGD:1303298 ARL10 +HGNC:24046 ARL11 ADP ribosylation factor like GTPase 11 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "ARLTS1|FLJ33930" ADP-ribosylation factor like GTPase 11 ARF GTPase family 357 2004-02-05 2015-12-17 2016-10-05 115761 ENSG00000152213 OTTHUMG00000016919 uc001vdf.2 AF441378 NM_138450 CCDS9419 Q969Q4 12477932 MGI:2444054 RGD:1308083 ARL11 609351 121417 +HGNC:31709 ARL13A ADP ribosylation factor like GTPase 13A protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 ARL13 "ADP-ribosylation factor-like 13|ADP-ribosylation factor like GTPase 13A" ARF GTPase family 357 2004-06-17 2005-11-18 2015-12-17 2015-12-17 392509 ENSG00000174225 OTTHUMG00000022013 uc010nng.4 XM_373358 CCDS55463 Q5H913 MGI:1921698 RGD:1562947 ARL13A +HGNC:25419 ARL13B ADP ribosylation factor like GTPase 13B protein-coding gene gene with protein product Approved 3q11.1-q11.2 03q11.1-q11.2 "DKFZp761H079|JBTS8" ARL2L1 "ADP-ribosylation factor-like 2-like 1|ADP-ribosylation factor like GTPase 13B" ARF GTPase family 357 2004-08-18 2005-11-18 2015-12-17 2016-10-11 200894 ENSG00000169379 OTTHUMG00000159012 uc003drd.4 AL713789 NM_182896 "CCDS2924|CCDS2925|CCDS54615" Q3SXY8 "15314642|18674751" MGI:1915396 RGD:1584979 ARL13B 608922 179401 +HGNC:22974 ARL14 ADP ribosylation factor like GTPase 14 protein-coding gene gene with protein product Approved 3q25.33 03q25.33 FLJ22595 ARF7 "ADP-ribosylation factor 7|ADP-ribosylation factor like GTPase 14" ARF GTPase family 357 2003-08-07 2005-11-03 2015-12-17 2015-12-17 80117 ENSG00000179674 OTTHUMG00000159031 uc003fdq.4 AK026248 NM_025047 CCDS3192 Q8N4G2 15367757 MGI:1918869 RGD:9465124 ARL14 614439 +HGNC:26798 ARL14EP ADP ribosylation factor like GTPase 14 effector protein protein-coding gene gene with protein product Approved 11p14.1 11p14.1 "FLJ38968|ARF7EP" C11orf46 "chromosome 11 open reading frame 46|ADP-ribosylation factor like GTPase 14 effector protein" 2005-10-28 2012-07-09 2015-12-17 2016-10-12 120534 ENSG00000152219 OTTHUMG00000166154 uc001mso.2 AK096287 NM_152316 CCDS7869 Q8N8R7 21458045 MGI:1926020 RGD:1311463 LRG_881|http://www.lrg-sequence.org/LRG/LRG_881 612295 +HGNC:44201 ARL14EPL ADP ribosylation factor like GTPase 14 effector protein like protein-coding gene gene with protein product Approved 5q23.1 05q23.1 ADP-ribosylation factor like GTPase 14 effector protein like 2012-07-09 2015-12-17 2015-12-17 644100 ENSG00000268223 OTTHUMG00000182725 uc021yct.3 NM_001195581 CCDS59490 P0DKL9 MGI:2685795 RGD:1595054 +HGNC:25945 ARL15 ADP ribosylation factor like GTPase 15 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 FLJ20051 ARFRP2 "ADP-ribosylation factor related protein 2|ADP-ribosylation factor like GTPase 15" ARF GTPase family 357 2004-02-05 2005-11-03 2015-12-17 2016-10-05 54622 ENSG00000185305 OTTHUMG00000162287 uc003jpg.1 BC026093 NM_019087 CCDS54850 Q9NXU5 12477932 MGI:2442308 RGD:1597407 ARL15 +HGNC:27902 ARL16 ADP ribosylation factor like GTPase 16 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 ADP-ribosylation factor like GTPase 16 ARF GTPase family 357 2005-11-18 2015-12-17 2015-12-17 339231 ENSG00000214087 OTTHUMG00000178103 uc060llx.1 NM_001040025 CCDS45813 Q0P5N6 12477932 MGI:1917567 RGD:1590059 ARL16 +HGNC:24096 ARL17A ADP ribosylation factor like GTPase 17A protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "ARF1P2|ARL17P1" "ADP-ribosylation factor 1 pseudogene 2|ADP-ribosylation factor-like 17 pseudogene 1|ADP-ribosylation factor like GTPase 17A" ARF GTPase family 357 2005-11-07 2009-11-17 2015-12-17 2015-12-17 51326 ENSG00000185829 OTTHUMG00000132817 uc002iks.3 AF208864 NM_016632 "CCDS45717|CCDS45718|CCDS74086|CCDS74087|CCDS82146" Q8IVW1 12477932 ARL17A +HGNC:32387 ARL17B ADP ribosylation factor like GTPase 17B protein-coding gene gene with protein product Approved 17q21.31 17q21.31 ARL17 "ADP-ribosylation factor-like 17|ADP-ribosylation factor-like 17B" ARF GTPase family 357 2007-03-19 2009-11-17 2015-11-19 2015-11-19 100506084 ENSG00000228696 OTTHUMG00000178031 uc002ikk.4 AF493886 NM_001039083 "CCDS54137|CCDS58557|CCDS82144" Q8IVW1 ARL17B +HGNC:17684 ARMC1 armadillo repeat containing 1 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 "FLJ10511|Arcp" Armadillo repeat containing 409 2004-09-16 2016-10-05 55156 ENSG00000104442 OTTHUMG00000164374 uc003xvl.4 BC011607 NM_018120 "CCDS6181|CCDS69490" Q9NVT9 MGI:1921502 RGD:1560393 ARMC1 +HGNC:23045 ARMC2 armadillo repeat containing 2 protein-coding gene gene with protein product Approved 6q21 06q21 "DKFZp434P0714|bA787I22.1" Armadillo repeat containing 409 2003-11-25 2014-11-18 84071 ENSG00000118690 OTTHUMG00000015335 uc003pss.6 BC030603 NM_032131 "CCDS5069|CCDS69168" Q8NEN0 MGI:1916449 RGD:1562413 ARMC2 +HGNC:41008 ARMC2-AS1 ARMC2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q21 06q21 ARMC2 antisense RNA 1 (non-protein coding) 2012-01-26 2012-08-15 2014-11-19 101929716 ENSG00000230290 OTTHUMG00000015334 uc063qmf.1 BG504478 NR_104137 +HGNC:30964 ARMC3 armadillo repeat containing 3 protein-coding gene gene with protein product Approved 10p12.2 10p12.2 "FLJ32827|CT81" cancer/testis antigen 81 Armadillo repeat containing 409 2004-02-12 2016-10-05 219681 ENSG00000165309 OTTHUMG00000017811 uc001irm.6 AK057389 NM_173081 "CCDS7142|CCDS60499|CCDS60500|CCDS73073" Q5W041 MGI:1918132 RGD:2319961 ARMC3 611226 +HGNC:25583 ARMC4 armadillo repeat containing 4 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "FLJ10817|FLJ10376|DKFZP434P1735|CILD23" Armadillo repeat containing 409 2004-02-04 2015-08-24 55130 ENSG00000169126 OTTHUMG00000017867 uc001itz.3 AL136859 NM_018076 CCDS7157 Q5T2S8 11230166 MGI:1922184 RGD:1306933 ARMC4 615408 360481 +HGNC:44937 ARMC4P1 armadillo repeat containing 4 pseudogene 1 pseudogene pseudogene Approved 10p12.1 10p12.1 2012-12-19 2014-10-06 101060171 ENSG00000238021 OTTHUMG00000017856 XR_001747395 PGOHUM00000290076 +HGNC:25781 ARMC5 armadillo repeat containing 5 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ13063 Armadillo repeat containing 409 2004-06-29 2016-10-05 79798 ENSG00000140691 OTTHUMG00000176618 uc002eca.5 AY217348 NM_024742 "CCDS42155|CCDS45472|CCDS73874" Q96C12 MGI:2384586 RGD:1306553 ARMC5 615549 392330 +HGNC:25049 ARMC6 armadillo repeat containing 6 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 MGC19595 Armadillo repeat containing 409 2004-07-30 2016-10-05 93436 ENSG00000105676 OTTHUMG00000169271 uc002nlc.4 BX648486 NM_033415 "CCDS32965|CCDS56089" Q6NXE6 12477932 MGI:1924063 RGD:1306691 ARMC6 +HGNC:26168 ARMC7 armadillo repeat containing 7 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 FLJ22160 Armadillo repeat containing 409 2004-07-30 2016-10-04 79637 ENSG00000125449 OTTHUMG00000179345 uc002jmw.1 AK025813 NM_024585 "CCDS11714|CCDS77107|CCDS77108|CCDS77109" Q9H6L4 12477932 MGI:2679719 RGD:1310043 ARMC7 +HGNC:24999 ARMC8 armadillo repeat containing 8 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "HSPC056|DKFZP434A043|GID5|VID28" GID complex subunit 5, VID28 homolog (S. cerevisiae) Armadillo repeat containing 409 2004-07-12 2016-10-05 25852 ENSG00000114098 OTTHUMG00000159821 uc062ofg.1 NM_015396 "CCDS3098|CCDS54646|CCDS58853|CCDS58854|CCDS75020" Q8IUR7 11042152 MGI:1921375 RGD:1310477 ARMC8 +HGNC:49918 ARMC8P1 armadillo repeat containing 8 pseudogene 1 pseudogene pseudogene Approved 9p13.1 09p13.1 2014-03-21 2014-03-21 100130871 ENSG00000225254 OTTHUMG00000019940 NG_028720 PGOHUM00000236034 +HGNC:20730 ARMC9 armadillo repeat containing 9 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "FLJ12584|KIAA1868|ARM|KU-MEL-1" Armadillo repeat containing 409 2005-10-04 2014-11-18 80210 ENSG00000135931 OTTHUMG00000133229 uc002vrq.6 BC004514 NM_025139 "CCDS2484|CCDS74666" Q7Z3E5 11347906 MGI:1926045 RGD:1305615 ARMC9 +HGNC:21706 ARMC10 armadillo repeat containing 10 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MGC3195|SVH" specific Splicing Variant involved in Hepatocarcinogenesis Armadillo repeat containing 409 2007-01-26 2014-11-19 83787 ENSG00000170632 OTTHUMG00000157201 uc003vax.3 AY150853 NM_031905 "CCDS5728|CCDS55145|CCDS55146|CCDS55147|CCDS55148|CCDS55149" Q8N2F6 12839973 MGI:1914461 RGD:1305915 ARMC10 611864 +HGNC:43646 ARMC10P1 armadillo repeat containing 10 pseudogene 1 pseudogene pseudogene Approved 3q11.2 03q11.2 2011-12-14 2011-12-14 389137 ENSG00000178660 OTTHUMG00000159019 NG_012229 +HGNC:21099 ARMC12 armadillo repeat containing 12 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 FLJ25390 C6orf81 chromosome 6 open reading frame 81 Armadillo repeat containing 409 2003-05-19 2011-12-14 2011-12-14 2014-11-18 221481 ENSG00000157343 OTTHUMG00000014577 uc003ola.5 AK058119 NM_145028 "CCDS4809|CCDS69093|CCDS69094" Q5T9G4 MGI:1914895 RGD:1306008 +HGNC:18073 ARMCX1 armadillo repeat containing, X-linked 1 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "ALEX1|GASP7" Armadillo repeat containing 409 2004-05-10 2015-08-24 51309 ENSG00000126947 OTTHUMG00000022033 uc004ehv.4 AB039670 NM_016608 CCDS14487 Q9P291 "11162520|16221301|22569362" MGI:1925498 RGD:1561629 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARMCX1 ARMCX1 300362 +HGNC:16869 ARMCX2 armadillo repeat containing, X-linked 2 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "ALEX2|KIAA0512|GASP9" Armadillo repeat containing 409 2004-05-10 2015-01-28 9823 ENSG00000184867 OTTHUMG00000022038 uc004eif.5 AB011084 NM_014782 CCDS14490 Q7L311 "9628581|11162520|16221301|22569362" MGI:1914666 RGD:1359132 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARMCX2 ARMCX2 300363 +HGNC:24065 ARMCX3 armadillo repeat containing, X-linked 3 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "ALEX3|GASP6" Armadillo repeat containing 409 2004-05-10 2014-11-18 51566 ENSG00000102401 OTTHUMG00000022035 uc004ehz.2 AY359079 NM_016607 CCDS14489 Q9UH62 "11162520|11042152|19304657|16221301|22569362" MGI:1918953 RGD:1549739 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARMCX3 ARMCX3 300364 +HGNC:41038 ARMCX3-AS1 ARMCX3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq22.1 Xq22.1 ARMCX3 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100128574 ENSG00000228275 OTTHUMG00000022037 uc065aib.1 +HGNC:28615 ARMCX4 armadillo repeat containing, X-linked 4 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "MGC40053|GASP4" CXorf35 "chromosome X open reading frame 35|armadillo repeat containing, X-linked 4 pseudogene" Armadillo repeat containing 409 2004-08-10 2009-11-26 2016-10-05 100131755 ENSG00000196440 OTTHUMG00000022030 uc031tkc.1 AK096955 NM_001256155 CCDS59170 Q5H9R4 "16221301|22569362" MGI:2147887 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARMCX4 ARMCX4 +HGNC:25772 ARMCX5 armadillo repeat containing, X-linked 5 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "FLJ12969|GASP5" Armadillo repeat containing 409 2004-09-16 2016-10-05 64860 ENSG00000125962 OTTHUMG00000022062 uc004ejg.4 NM_022838 CCDS14500 Q6P1M9 "16221301|22569362" MGI:2148026 RGD:7586448 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARMCX5 ARMCX5 +HGNC:42000 ARMCX5-GPRASP2 ARMCX5-GPRASP2 readthrough other readthrough Approved Xq22.1 Xq22.1 2011-05-31 2015-08-04 100528062 ENSG00000271147 OTTHUMG00000022059 uc065ajt.1 NM_001199818.1 +HGNC:26094 ARMCX6 armadillo repeat containing, X-linked 6 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "FLJ20811|GASP10" Armadillo repeat containing 409 2004-09-16 2016-10-05 54470 ENSG00000198960 OTTHUMG00000022034 uc004ehx.4 BC007677 NM_019007 CCDS14488 Q7L4S7 "16221301|22569362" MGI:2147993 RGD:1359303 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARMCX6 ARMCX6 +HGNC:49917 ARMCX7P armadillo repeat containing, X-linked 7, pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 "ARMCX6-ps|GASP10ps" 2014-03-21 2014-03-21 653354 ENSG00000204072 OTTHUMG00000022036 NG_022684 "16221301|22569362" MGI:3648067 PGOHUM00000241910 +HGNC:32685 ARMS2 age-related maculopathy susceptibility 2 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "LOC387715|ARMD8" 2007-01-04 2013-01-23 387715 ENSG00000254636 OTTHUMG00000048232 uc001lgi.4 BC066349 NM_001099667 CCDS53585 P0C7Q2 "16080115|16174643" ARMS2 611313 236977 +HGNC:17872 ARMT1 acidic residue methyltransferase 1 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 FLJ12910 C6orf211 chromosome 6 open reading frame 211 2003-08-26 2015-03-02 2015-03-02 2015-03-02 79624 ENSG00000146476 OTTHUMG00000015838 AJ420548 NM_024573 "CCDS5233|CCDS69224" Q9H993 MGI:1920669 RGD:1305235 616332 +HGNC:700 ARNT aryl hydrocarbon receptor nuclear translocator protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "HIF-1beta|bHLHe2" Basic helix-loop-helix proteins 420 1990-01-22 2016-10-05 405 ENSG00000143437 OTTHUMG00000035011 uc001evr.2 AF001307 XM_017001288 "CCDS970|CCDS971|CCDS65641|CCDS65642" P27540 MGI:88071 RGD:2153 ARNT 126110 +HGNC:16876 ARNT2 aryl hydrocarbon receptor nuclear translocator 2 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "KIAA0307|bHLHe1" Basic helix-loop-helix proteins 420 2001-12-05 2015-11-24 2015-11-24 9915 ENSG00000172379 OTTHUMG00000165478 uc002bfr.4 AB002305 NM_014862 CCDS32307 Q9HBZ2 11247670 MGI:107188 RGD:2154 ARNT2 606036 376571 +HGNC:701 ARNTL aryl hydrocarbon receptor nuclear translocator like protein-coding gene gene with protein product Approved 11p15.3 11p15.3 "MOP3|JAP3|BMAL1|PASD3|bHLHe5" Basic helix-loop-helix proteins 420 1997-11-06 2015-11-24 2016-10-05 406 ENSG00000133794 OTTHUMG00000150623 uc001mkp.4 D89722 NM_001178 "CCDS31430|CCDS44543|CCDS73259|CCDS76387" O00327 "9144434|9079689" MGI:1096381 RGD:62003 ARNTL 602550 +HGNC:18984 ARNTL2 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding gene gene with protein product Approved 12p11.23 12p11.23 "BMAL2|MOP9|CLIF|PASD9|bHLHe6" Basic helix-loop-helix proteins 420 2003-08-21 2015-11-24 2016-10-05 56938 ENSG00000029153 OTTHUMG00000169257 uc001rht.3 AF246961 NM_020183 "CCDS8712|CCDS58219|CCDS58220|CCDS58221|CCDS58222" Q8WYA1 "10864977|10964693" MGI:2684845 RGD:620230 ARNTL2 614517 +HGNC:49892 ARNTL2-AS1 ARNTL2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p11.23 12p11.23 2014-03-18 2014-03-18 101928646 ENSG00000245311 OTTHUMG00000169258 NR_109975 +HGNC:703 ARPC1A actin related protein 2/3 complex subunit 1A protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "SOP2Hs|SOP2L|Arc40" "actin binding protein (Schizosaccharomyces pombe sop2-like)|SOP2-like protein" "actin related protein 2/3 complex, subunit 1A (41 kD)|actin related protein 2/3 complex subunit 1A, 41kDa" "Actin related protein 2/3 complex |WD repeat domain containing" "39|362" 1999-08-06 2015-11-05 2015-11-05 10552 ENSG00000241685 OTTHUMG00000154553 uc003upx.3 Y08999 NM_006409 CCDS5660 Q92747 "8978670|9230079" MGI:1928896 RGD:620834 ARPC1A 604220 +HGNC:704 ARPC1B actin related protein 2/3 complex subunit 1B protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "ARC41|p40-ARC|p41-ARC" "ARP2/3 protein complex subunit p41|actin related protein 2/3 complex, subunit 1A (41 kD)" "actin related protein 2/3 complex, subunit 1B (41 kD)|actin related protein 2/3 complex subunit 1B, 41kDa" "Actin related protein 2/3 complex |WD repeat domain containing" "39|362" 1999-08-06 2015-11-05 2015-11-05 10095 ENSG00000130429 OTTHUMG00000154552 uc003upz.4 AF006084 NM_005720 CCDS5661 O15143 "9230079|9359840" MGI:1343142 RGD:2155 ARPC1B 604223 +HGNC:705 ARPC2 actin related protein 2/3 complex subunit 2 protein-coding gene gene with protein product Approved 2q35 02q35 "p34-Arc|ARC34" "actin related protein 2/3 complex, subunit 2 (34 kD)|actin related protein 2/3 complex subunit 2, 34kDa" Actin related protein 2/3 complex 39 1999-08-06 2015-11-05 2016-10-05 10109 ENSG00000163466 OTTHUMG00000133618 uc002vhd.4 AF006085 NM_005731 CCDS2410 O15144 "9359840|9230079" MGI:1923959 RGD:1305848 ARPC2 604224 +HGNC:706 ARPC3 actin related protein 2/3 complex subunit 3 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "p21-Arc|ARC21" "actin related protein 2/3 complex, subunit 3 (21 kD)|actin related protein 2/3 complex subunit 3, 21kDa" Actin related protein 2/3 complex 39 1999-08-06 2015-11-05 2016-10-05 10094 ENSG00000111229 OTTHUMG00000134333 uc001tqq.5 AF006086 NM_001278556 CCDS9146 O15145 "9230079|9359840" MGI:1928375 RGD:1311985 ARPC3 604225 +HGNC:16092 ARPC3P1 actin related protein 2/3 complex subunit 3 pseudogene 1 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ470L14.3 ARPC3B "actin related protein 2/3 complex, subunit 3B (21 kD)|actin related protein 2/3 complex, subunit 3B, 21kDa" 2001-07-17 2010-12-15 2015-11-04 2015-11-05 87171 ENSG00000226284 OTTHUMG00000032694 AL133174 NG_002363 PGOHUM00000247668 +HGNC:39431 ARPC3P2 actin related protein 2/3 complex subunit 3 pseudogene 2 pseudogene pseudogene Approved 1q32.3 01q32.3 2010-12-15 2015-11-04 2015-11-05 391160 ENSG00000238137 OTTHUMG00000037003 NG_022826 PGOHUM00000245198 +HGNC:39432 ARPC3P3 actin related protein 2/3 complex subunit 3 pseudogene 3 pseudogene pseudogene Approved 11q21 11q21 2010-12-16 2015-11-04 2015-11-05 729494 NG_021798 PGOHUM00000242431 +HGNC:39434 ARPC3P4 actin related protein 2/3 complex subunit 3 pseudogene 4 pseudogene pseudogene Approved 11q13.4 11q13.4 2010-12-16 2015-11-04 2015-11-05 100421973 NG_024384 PGOHUM00000242364 +HGNC:39435 ARPC3P5 actin related protein 2/3 complex subunit 3 pseudogene 5 pseudogene pseudogene Approved 6p22.3 06p22.3 2010-12-16 2015-11-04 2015-11-05 441131 ENSG00000214027 OTTHUMG00000014296 NG_022345 +HGNC:707 ARPC4 actin related protein 2/3 complex subunit 4 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "p20-Arc|ARC20" "Arp2/3 protein complex subunit p20|actin related protein 2/3 complex, subunit 4 (20 kD)" "actin related protein 2/3 complex, subunit 4 (20 kD)|actin related protein 2/3 complex subunit 4, 20kDa" Actin related protein 2/3 complex 39 1999-08-06 2015-11-05 2016-10-05 10093 ENSG00000241553 OTTHUMG00000133768 uc003bsz.3 AF019888 NM_001024959 "CCDS43047|CCDS46743|CCDS56238" P59998 "9230079|9359840" MGI:1915339 RGD:1310096 ARPC4 604226 +HGNC:38830 ARPC4-TTLL3 ARPC4-TTLL3 readthrough other readthrough Approved 3p25.3 03p25.3 2011-02-21 2014-11-19 100526693 ENSG00000250151 OTTHUMG00000161408 uc003btd.5 NM_001198793.1 CCDS56237 +HGNC:708 ARPC5 actin related protein 2/3 complex subunit 5 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "p16-Arc|ARC16|dJ127C7.3" Arp2/3 protein complex subunit p16 "actin related protein 2/3 complex, subunit 5 (16 kD)|actin related protein 2/3 complex subunit 5, 16kDa" Actin related protein 2/3 complex 39 1999-08-06 2015-11-05 2016-10-05 10092 ENSG00000162704 OTTHUMG00000035326 uc057nwe.1 AF017807 NM_005717 "CCDS1357|CCDS58050" O15511 "9359840|9230079" MGI:1915021 RGD:1311791 ARPC5 604227 +HGNC:23366 ARPC5L actin related protein 2/3 complex subunit 5 like protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "MGC3038|ARC16-2" actin related protein 2/3 complex subunit 5-like Actin related protein 2/3 complex 39 2003-11-14 2016-06-09 2016-10-05 81873 ENSG00000136950 OTTHUMG00000020660 uc004boz.2 AF087842 NM_030978 CCDS6859 Q9BPX5 MGI:1921442 RGD:1308867 ARPC5L +HGNC:28782 ARPIN actin-related protein 2/3 complex inhibitor protein-coding gene gene with protein product Approved 15q26.1 15q26.1 MGC61550 C15orf38 chromosome 15 open reading frame 38 2005-10-24 2014-06-24 2014-06-24 2014-11-19 348110 ENSG00000242498 OTTHUMG00000154515 BC053602 NM_182616 "CCDS42080|CCDS73780" Q7Z6K5 24132237 MGI:1917670 RGD:1311021 615543 +HGNC:16967 ARPP19 cAMP regulated phosphoprotein 19 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "ARPP-19|ARPP-16|ARPP16|ENSAL" endosulfine alpha-like cAMP-regulated phosphoprotein, 19kDa 2009-04-20 2016-06-01 2016-10-05 10776 ENSG00000128989 OTTHUMG00000172677 uc002ace.2 AF084555 NM_006628 "CCDS32242|CCDS76757|CCDS81883" P56211 "11279279|8687439" MGI:1891691 RGD:71054 ARPP19 605487 +HGNC:16968 ARPP21 cAMP regulated phosphoprotein 21 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 "ARPP-21|TARPP|R3HDM3" R3H domain containing 3 cAMP-regulated phosphoprotein, 21kDa 2010-08-12 2016-06-01 2016-10-05 10777 ENSG00000172995 OTTHUMG00000130795 uc003cgb.4 AA733082 NM_198399 "CCDS2661|CCDS43063|CCDS58823|CCDS58824" Q9UBL0 8120638 MGI:107562 RGD:1593239 ARPP21 605488 +HGNC:40785 ARPP21-AS1 ARPP21 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.3 03p22.3 ARPP21 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874098 ENSG00000230830 OTTHUMG00000156606 uc062hzu.1 +HGNC:710 ARR3 arrestin 3 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 ARRX "arrestin 4|cone arrestin" "arrestin 3, retinal (X-arrestin)|arrestin 3 retinal (X-arrestin)" Classical arrestins 1312 1994-08-04 2016-07-08 2016-07-08 407 ENSG00000120500 OTTHUMG00000021768 uc004dyb.3 NM_004312 CCDS14399 P36575 8224247 MGI:2159617 RGD:621385 ARR3 301770 +HGNC:711 ARRB1 arrestin beta 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 arrestin 2 ARR1 arrestin, beta 1 Classical arrestins 1312 1994-01-10 2016-03-30 2016-10-05 408 ENSG00000137486 OTTHUMG00000165444 uc001owf.3 BC003636 NM_004041 "CCDS31640|CCDS44684" P49407 8486659 MGI:99473 RGD:2156 ARRB1 107940 +HGNC:712 ARRB2 arrestin beta 2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "BARR2|DKFZp686L0365" arrestin 3 ARR2 arrestin, beta 2 Classical arrestins 1312 1994-01-10 2016-03-30 2016-10-05 409 ENSG00000141480 OTTHUMG00000090759 uc002fyj.4 NM_004313 "CCDS11050|CCDS11051|CCDS58504|CCDS58505|CCDS59276|CCDS82039" P32121 7695743 MGI:99474 RGD:2157 ARRB2 107941 +HGNC:28633 ARRDC1 arrestin domain containing 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 MGC40555 alpha-arrestin 1 Alpha arrestins 1311 2004-02-09 2014-11-19 92714 ENSG00000197070 OTTHUMG00000020993 uc004cns.4 AJ420420 NM_152285 CCDS7049 Q8N5I2 23886940 MGI:2446136 RGD:1309961 ARRDC1 +HGNC:23395 ARRDC1-AS1 ARRDC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 C9orf37 chromosome 9 open reading frame 37 2003-11-14 2014-07-17 2014-07-17 2014-11-19 85026 ENSG00000203993 OTTHUMG00000020988 AF267857 NR_122035 Q9H2J1 +HGNC:25225 ARRDC2 arrestin domain containing 2 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "CLONE24945|PP2703" Alpha arrestins 1311 2004-02-10 2016-10-05 27106 ENSG00000105643 OTTHUMG00000183483 uc002nhv.3 NM_015683 "CCDS12370|CCDS32956" Q8TBH0 "8619474|9110174" MGI:1918057 RGD:1309659 ARRDC2 +HGNC:29263 ARRDC3 arrestin domain containing 3 protein-coding gene gene with protein product Approved 5q14.3 05q14.3 "KIAA1376|TLIMP" "alpha-arrestin 3|TBP-2-like inducible membrane protein" Alpha arrestins 1311 2004-02-11 2016-07-08 57561 ENSG00000113369 OTTHUMG00000162616 uc003kjz.3 AB037797 NM_020801 CCDS34202 Q96B67 "10718198|19605364" MGI:2145242 RGD:1359478 ARRDC3 612464 +HGNC:44145 ARRDC3-AS1 ARRDC3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q14.3 05q14.3 ARRDC3 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100129716 ENSG00000281357 OTTHUMG00000189546 uc003kka.5 BC043415 NR_027435 +HGNC:28087 ARRDC4 arrestin domain containing 4 protein-coding gene gene with protein product Approved 15q26.2 15q26.2 FLJ36045 Alpha arrestins 1311 2004-02-11 2014-11-19 91947 ENSG00000140450 OTTHUMG00000149849 uc010bom.4 BC028704 NM_183376 CCDS10377 Q8NCT1 12477932 MGI:1913662 RGD:1311763 ARRDC4 +HGNC:31407 ARRDC5 arrestin domain containing 5 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 Alpha arrestins 1311 2004-04-14 2007-10-05 645432 ENSG00000205784 OTTHUMG00000180250 uc002mbm.3 XM_292803 CCDS45929 A6NEK1 12886014 MGI:1924170 RGD:1591748 ARRDC5 +HGNC:713 ARSA arylsulfatase A protein-coding gene gene with protein product Approved 22q13.33 22q13.33 metachromatic leucodystrophy Sulfatases 410 1986-01-01 2016-04-25 410 ENSG00000100299 OTTHUMG00000150180 uc021wse.2 X52150 NM_000487 "CCDS14100|CCDS46736" P15289 15772092 MGI:88077 RGD:1310381 ARSA 607574 121427 3.1.6.8 +HGNC:714 ARSB arylsulfatase B protein-coding gene gene with protein product Approved 5q14.1 05q14.1 Sulfatases 410 1986-01-01 2015-08-28 411 ENSG00000113273 OTTHUMG00000108129 uc003kfq.5 M32373 NM_000046 "CCDS4043|CCDS43334" P15848 2303452 MGI:88075 RGD:2158 ARSB 611542 121429 3.1.6.1 +HGNC:716 ARSC2 arylsulfatase C, isozyme F other unknown Approved X X ARSC Sulfatases 410 1988-08-31 2013-02-14 413 "1690506|6586638" 301780 +HGNC:717 ARSD arylsulfatase D protein-coding gene gene with protein product Approved Xp22.33 Xp22.33 Sulfatases 410 1995-04-26 2016-10-05 414 ENSG00000006756 OTTHUMG00000021077 uc004cqy.4 X83572 NM_001669 CCDS35196 P51689 7720070 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARSD ARSD 300002 +HGNC:40085 ARSD-AS1 ARSD antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.33 Xp22.33 ARSD antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100506356 ENSG00000229851 OTTHUMG00000021076 uc064xvj.1 +HGNC:718 ARSDP1 arylsulfatase D pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 ARSDY1 arylsulfatase D, Y-linked, pseudogene 1 ARSDP arylsulfatase D pseudogene 1999-05-17 2010-01-12 2010-01-12 2014-11-19 10034 ENSG00000225117 OTTHUMG00000036380 AC002992 NG_000881.2 8845834 PGOHUM00000233955 +HGNC:719 ARSE arylsulfatase E (chondrodysplasia punctata 1) protein-coding gene gene with protein product Approved Xp22.33 Xp22.33 "CDPX|CDPX1" Sulfatases 410 1995-04-26 2015-09-07 415 ENSG00000157399 OTTHUMG00000137358 uc004crc.5 X83573 NM_000047 "CCDS14122|CCDS75948|CCDS75949" P51690 7720070 RGD:1304917 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARSE ARSE 300180 121431 +HGNC:720 ARSEP1 arylsulfatase E pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 ARSEP arylsulfatase E pseudogene 1999-05-17 2010-01-12 2010-01-12 2014-11-18 10033 ENSG00000224060 OTTHUMG00000036379 NG_000880 8845834 PGOHUM00000233954 +HGNC:721 ARSF arylsulfatase F protein-coding gene gene with protein product Approved Xp22.33 Xp22.33 Sulfatases 410 1995-04-26 2016-10-05 416 ENSG00000062096 OTTHUMG00000021081 uc004cre.3 X97868 XM_017029527 CCDS14123 P54793 7720070 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ARSF ARSF 300003 +HGNC:722 ARSFP1 arylsulfatase F pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 ARSFP arylsulfatase F pseudogene 1999-10-28 2010-01-12 2010-01-12 2014-11-18 23757 ENSG00000232226 OTTHUMG00000036376 NG_002804 PGOHUM00000233745 +HGNC:24102 ARSG arylsulfatase G protein-coding gene gene with protein product Approved 17q24.2 17q24.2 KIAA1001 Sulfatases 410 2006-02-09 2006-02-15 2015-09-11 22901 ENSG00000141337 OTTHUMG00000179810 uc002jhc.3 AB023218 NM_014960 CCDS11676 Q96EG1 "12461688|16174644" MGI:1921258 RGD:1306571 ARSG 610008 +HGNC:32488 ARSH arylsulfatase family member H protein-coding gene gene with protein product Approved Xp22.33 Xp22.33 "arylsulfatase H|arylsulfatase family, member H" Sulfatases 410 2006-02-09 2015-11-18 2015-11-18 347527 ENSG00000205667 OTTHUMG00000159612 uc011mhj.3 AY875940 NM_001011719 CCDS35198 Q5FYA8 16174644 ARSH 300586 +HGNC:32521 ARSI arylsulfatase family member I protein-coding gene gene with protein product Approved 5q32 05q32 "FLJ16069|SPG66" "arylsulfatase I|arylsulfatase family, member I" Sulfatases 410 2006-02-09 2015-11-18 2016-06-28 340075 ENSG00000183876 OTTHUMG00000163479 uc003lrv.3 AY875937 NM_001012301 CCDS34275 Q5FYB1 "16174644|24482476" MGI:2670959 RGD:1310242 ARSI 610009 403370 3.1.6.- +HGNC:26286 ARSJ arylsulfatase family member J protein-coding gene gene with protein product Approved 4q26 04q26 FLJ23548 "arylsulfatase J|arylsulfatase family, member J" Sulfatases 410 2006-02-09 2015-11-18 2015-11-18 79642 ENSG00000180801 OTTHUMG00000161067 uc003ibq.2 NM_024590 CCDS43264 Q5FYB0 "12975309|16174644" MGI:2443513 RGD:1307640 ARSJ 610010 +HGNC:25239 ARSK arylsulfatase family member K protein-coding gene gene with protein product Approved 5q15 05q15 "DKFZp313G1735|TSULF" "arylsulfatase K|arylsulfatase family, member K" Sulfatases 410 2006-02-09 2015-11-18 2016-06-28 153642 ENSG00000164291 OTTHUMG00000121166 uc003kld.4 NM_198150 CCDS4073 Q6UWY0 "12975309|16174644" MGI:1924291 RGD:1310182 ARSK 610011 3.1.6.- +HGNC:723 ART1 ADP-ribosyltransferase 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "ART2|CD296" CD molecules 471 1997-01-22 2016-10-05 417 ENSG00000129744 OTTHUMG00000011845 uc001lye.1 S74683 NM_004314 CCDS7744 P52961 8812442 MGI:107511 RGD:1304591 ART1 601625 CD296 +HGNC:51489 ART2BP ADP-ribosyltransferase 2B, pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 2015-01-16 2015-01-16 106481723 ENSG00000237408 OTTHUMG00000154241 NG_043401 MGI:107545 +HGNC:724 ART2P ADP-ribosyltransferase 2, pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 ART1P RT6 ADP-ribosyltransferase 2 pseudogene (RT6 antigen homolog, rat) 1993-06-08 2013-09-12 2016-10-05 418 ENSG00000238048 OTTHUMG00000154242 X65050 NG_001076 8812442 PGOHUM00000291030 +HGNC:725 ART3 ADP-ribosyltransferase 3 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 1998-05-11 2015-08-28 419 ENSG00000156219 OTTHUMG00000130110 uc003hjn.4 X95827 NM_001179 "CCDS3575|CCDS47079|CCDS47080" Q13508 9119374 MGI:1202729 RGD:628833 ART3 603086 +HGNC:726 ART4 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "DOK1|CD297" NAD(+)--protein-arginine ADP-ribosyltransferase 4 DO "Dombrock blood group|ADP-ribosyltransferase 4 (DO blood group)|ADP-ribosyltransferase 4" "Blood group antigens|CD molecules" "454|471" 1998-05-11 2006-01-12 2014-01-02 2016-10-12 420 ENSG00000111339 OTTHUMG00000168738 uc001rcl.2 X95826 NM_021071 CCDS8668 Q93070 9119374 MGI:1202710 RGD:1306456 LRG_807|http://www.lrg-sequence.org/LRG/LRG_807 ART4 110600 CD297 2.4.2.31 +HGNC:24049 ART5 ADP-ribosyltransferase 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 2004-11-30 2015-09-11 116969 ENSG00000167311 OTTHUMG00000011842 uc001lyc.2 Y16835 NM_053017 "CCDS7743|CCDS73242" Q96L15 "11587854|10448534" MGI:107948 RGD:628834 ART5 610625 +HGNC:727 ARTN artemin protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "NBN|EVN|ENOVIN" "neublastin|neurotrophic factor" Endogenous ligands 542 1999-01-22 2015-02-16 9048 ENSG00000117407 OTTHUMG00000007705 uc001ckv.4 AF109401 NM_057090 "CCDS501|CCDS502" Q5T4W7 9883723 MGI:1333791 RGD:621427 ARTN 603886 +HGNC:29561 ARV1 ARV1 homolog, fatty acid homeostasis modulator protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "ARV1 homolog (yeast)|ARV1 homolog (S. cerevisiae)" 2004-11-17 2015-09-25 2015-09-25 64801 ENSG00000173409 OTTHUMG00000037837 uc001huh.4 AF271780 NM_022786 CCDS1589 Q9H2C2 "11063737|12145310|20663892" MGI:1916115 RGD:1310264 ARV1 611647 +HGNC:728 ARVCF armadillo repeat gene deleted in velocardiofacial syndrome protein-coding gene gene with protein product Approved 22q11.21 22q11.21 Armadillo repeat containing 409 1996-10-11 2010-04-28 2015-09-11 421 ENSG00000099889 OTTHUMG00000030426 uc002zqz.4 NM_001670 CCDS13771 O00192 "9126485|15456900" MGI:109620 RGD:1306655 ARVCF 602269 121435 +HGNC:731 ARVD3 arrhythmogenic right ventricular dysplasia 3 phenotype phenotype only Approved 14q12-q22 14q12-q22 1997-07-25 1997-07-25 424 8824801 602086 +HGNC:732 ARVD4 arrhythmogenic right ventricular dysplasia 4 phenotype phenotype only Approved 2q32.1-q32.3 02q32.1-q32.3 1997-08-18 1997-12-23 425 9344647 602087 +HGNC:18060 ARX aristaless related homeobox protein-coding gene gene with protein product Approved Xp21.3 Xp21.3 "ISSX|CT121|EIEE1" cancer/testis antigen 121 "MRXS1|PRTS|MRX76|MRX54|MRX43|MRX36|MRX29|MRX32|MRX33|MRX38|MRX87" "mental retardation, X-linked 54|mental retardation, X-linked 43|mental retardation, X-linked 36|mental retardation, X-linked 29|mental retardation, X-linked 32|mental retardation, X-linked 33|mental retardation, X-linked 38|mental retardation, X-linked 87|mental retardation, X-linked 76" "X-linked mental retardation|PRD class homeoboxes and pseudogenes" "103|521" 2002-02-11 2014-11-19 170302 ENSG00000004848 OTTHUMG00000021275 uc004dbp.5 AY038071 NM_139058 CCDS14215 Q96QS3 "11889467|15850492|17480217" MGI:1097716 RGD:1562672 ARX 300382 8573 121437 +HGNC:17452 AS3MT arsenite methyltransferase protein-coding gene gene with protein product Approved 10q24.32 10q24.32 CYT19 arsenic (+3 oxidation state) methyltransferase 2004-06-25 2014-05-09 2016-10-05 57412 ENSG00000214435 OTTHUMG00000018972 uc001kwk.4 AF226730 NM_020682 CCDS41567 Q9HBK9 11790780 MGI:1929882 RGD:621325 AS3MT 611806 2.1.1.137 +HGNC:735 ASAH1 N-acylsphingosine amidohydrolase 1 protein-coding gene gene with protein product Approved 8p22 08p22 "AC|PHP32|FLJ21558|ACDase" "acylsphingosine deacylase|acid ceramidase" ASAH N-acylsphingosine amidohydrolase (acid ceramidase) 1997-08-22 2002-09-13 2016-06-21 2016-06-21 427 ENSG00000104763 OTTHUMG00000096997 uc003wyl.3 U70063 NM_004315 "CCDS6005|CCDS6006|CCDS47813" Q13510 "8955159|10610716" MGI:1277124 RGD:621568 ASAH1 613468 121449 C89.001 objectId:2491 3.5.1.23 +HGNC:18860 ASAH2 N-acylsphingosine amidohydrolase 2 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 "neutral ceramidase|non-lysosomal ceramidase" N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2 2002-07-05 2016-06-21 2016-06-21 56624 ENSG00000188611 OTTHUMG00000018223 uc001jjd.4 AF250847 NM_019893 "CCDS7239|CCDS44398" Q9NR71 10781606 MGI:1859310 RGD:69410 ASAH2 611202 objectId:2492 +HGNC:23456 ASAH2B N-acylsphingosine amidohydrolase 2B protein-coding gene gene with protein product Approved 10q11.23 10q11.23 "bA449O16.3|ASAH2L|bA98I6.3" ASAH2C "N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2C|N-acylsphingosine amidohydrolase (non-lysosomal ceramidase) 2B" 2004-06-25 2016-06-21 2016-06-21 653308 ENSG00000204147 OTTHUMG00000018239 uc001jjg.5 BI553338 NM_001321958 "CCDS31203|CCDS81465" P0C7U1 17334805 ASAH2B objectId:2493 +HGNC:2720 ASAP1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding gene gene with protein product Approved 8q24.21-q24.22 08q24.21-q24.22 "PAP|KIAA1249|ZG14P|CENTB4" centaurin, beta 4 DDEF1 development and differentiation enhancing factor 1 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 1999-08-13 2008-09-22 2008-09-22 2016-10-11 50807 ENSG00000153317 OTTHUMG00000164772 uc003yta.3 AB033075 NM_018482 "CCDS6362|CCDS75788" Q9ULH1 "9819391|25774636" MGI:1342335 RGD:1307379 ASAP1 605953 +HGNC:24998 ASAP1-IT1 ASAP1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "HSPC054|NCRNA00050|ASAP1IT|ASAP1-IT" "non-protein coding RNA 50|ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 intronic transcript 1 (non-protein coding)" DDEF1IT1 "DDEF1 intronic transcript 1|DDEF1 intronic transcript 1 (non-protein coding)|ASAP1 intronic transcript 1 (non-protein coding)" 2005-09-05 2011-03-23 2015-02-25 2015-02-25 29065 AF161539 NR_002765 11042152 +HGNC:48917 ASAP1-IT2 ASAP1 intronic transcript 2 non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 ASAP1 intronic transcript 2 (non-protein coding) 2013-07-05 2015-02-25 2015-02-25 100507117 ENSG00000280543 OTTHUMG00000189586 NR_045385 +HGNC:2721 ASAP2 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "KIAA0400|PAP|SHAG1|CENTB3" centaurin, beta 3 DDEF2 development and differentiation enhancing factor 2 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 1999-08-13 2008-09-22 2008-09-22 2016-10-05 8853 ENSG00000151693 OTTHUMG00000117485 uc002qzh.3 AB007860 NM_003887 "CCDS1661|CCDS46224" O43150 "10022920|9455477" MGI:2685438 RGD:1305263 ASAP2 603817 +HGNC:14987 ASAP3 ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "FLJ20199|UPLC1|CENTB6" centaurin, beta 6 DDEFL1 development and differentiation enhancing factor-like 1 "ArfGAPs|Ankyrin repeat domain containing|Pleckstrin homology domain containing|BAR-PH domain containing" "395|403|682|1291" 2001-03-27 2008-09-22 2008-10-09 2016-10-05 55616 ENSG00000088280 OTTHUMG00000003234 uc001bha.3 AK000206 NM_017707 "CCDS235|CCDS44087" Q8TDY4 14654939 MGI:2684986 RGD:1593929 ASAP3 616594 +HGNC:16011 ASB1 ankyrin repeat and SOCS box containing 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 ASB-1 ankyrin repeat and SOCS box-containing 1 Ankyrin repeat domain containing 403 2001-06-29 2011-01-25 2016-10-05 51665 ENSG00000065802 OTTHUMG00000152866 uc002vyg.4 AF156777 NM_001040445 "CCDS33416|CCDS82582" Q9Y576 MGI:1929735 RGD:1310760 ASB1 605758 +HGNC:16012 ASB2 ankyrin repeat and SOCS box containing 2 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 ASB-2 ankyrin repeat and SOCS box-containing 2 Ankyrin repeat domain containing 403 2001-06-29 2011-01-25 2016-01-14 51676 ENSG00000100628 OTTHUMG00000171298 uc001ycc.3 AF159164 XM_005267758 "CCDS9915|CCDS55940" Q96Q27 MGI:1929743 RGD:1306414 ASB2 605759 +HGNC:16013 ASB3 ankyrin repeat and SOCS box containing 3 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 ASB-3 ankyrin repeat and SOCS box-containing 3 Ankyrin repeat domain containing 403 2001-06-29 2011-01-25 2015-07-24 51130 ENSG00000115239 OTTHUMG00000184778 uc002rxg.3 AK000985 NM_016115 "CCDS1846|CCDS1847" Q9Y575 15899873 MGI:1929749 RGD:1308462 ASB3 605760 +HGNC:16009 ASB4 ankyrin repeat and SOCS box containing 4 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 ASB-4 ankyrin repeat and SOCS box-containing 4 Ankyrin repeat domain containing 403 2001-06-29 2011-01-25 2016-10-05 51666 ENSG00000005981 OTTHUMG00000153960 uc011kij.3 AF156779 NM_016116 "CCDS5641|CCDS5642" Q9Y574 MGI:1929751 RGD:1563114 ASB4 605761 +HGNC:17180 ASB5 ankyrin repeat and SOCS box containing 5 protein-coding gene gene with protein product Approved 4q34.2 04q34.2 ankyrin repeat and SOCS box-containing 5 Ankyrin repeat domain containing 403 2001-12-05 2011-01-25 2016-10-05 140458 ENSG00000164122 OTTHUMG00000160793 uc003iuq.3 AY057053 XM_011531616 CCDS3827 Q8WWX0 MGI:1923544 RGD:1565973 ASB5 615050 +HGNC:17181 ASB6 ankyrin repeat and SOCS box containing 6 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 ankyrin repeat and SOCS box-containing 6 Ankyrin repeat domain containing 403 2001-12-05 2011-01-25 2016-10-05 140459 ENSG00000148331 OTTHUMG00000020787 uc004byf.3 NM_017873 "CCDS6924|CCDS6925|CCDS75919" Q9NWX5 MGI:1919573 RGD:1308445 ASB6 615051 +HGNC:17182 ASB7 ankyrin repeat and SOCS box containing 7 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 ankyrin repeat and SOCS box-containing 7 Ankyrin repeat domain containing 403 2001-12-05 2011-01-25 2015-08-24 140460 ENSG00000183475 OTTHUMG00000149868 uc002bwk.4 NM_024708 "CCDS10387|CCDS10388" Q9H672 MGI:2152835 RGD:1305154 ASB7 615052 +HGNC:17183 ASB8 ankyrin repeat and SOCS box containing 8 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "MGC5540|FLJ21255" ankyrin repeat and SOCS box-containing 8 Ankyrin repeat domain containing 403 2001-12-05 2011-01-25 2016-01-14 140461 ENSG00000177981 OTTHUMG00000167834 uc001rrh.4 AK024908 NM_024095 "CCDS8761|CCDS81686" Q9H765 12076535 MGI:1925791 RGD:1309246 ASB8 615053 +HGNC:17184 ASB9 ankyrin repeat and SOCS box containing 9 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "DKFZP564L0862|MGC4954|FLJ20636" ankyrin repeat and SOCS box-containing 9 Ankyrin repeat domain containing 403 2001-12-05 2011-01-25 2015-09-11 140462 ENSG00000102048 OTTHUMG00000021172 uc004cwl.4 AK000643 XM_017029283 "CCDS14163|CCDS35208|CCDS55372" Q96DX5 12076535 MGI:1916549 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ASB9 ASB9 300890 +HGNC:20972 ASB9P1 ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudogene pseudogene Approved 15q26.1 15q26.1 ankyrin repeat and SOCS box-containing 9 pseudogene 1 2010-08-18 2011-01-25 2012-10-03 728619 ENSG00000258527 OTTHUMG00000171749 NR_033769 PGOHUM00000259002 +HGNC:17185 ASB10 ankyrin repeat and SOCS box containing 10 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 GLC1F "ankyrin repeat and SOCS box-containing 10|glaucoma 1, open angle, F (adult-onset)" Ankyrin repeat domain containing 403 2001-12-05 2011-01-25 2016-10-05 136371 ENSG00000146926 OTTHUMG00000157013 uc003wjm.2 AK055536 NM_080871 "CCDS47749|CCDS47750|CCDS5921" Q8WXI3 22156576 MGI:2152836 RGD:1562922 ASB10 615054 358407 +HGNC:17186 ASB11 ankyrin repeat and SOCS box containing 11 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 DKFZp779E2460 "ankyrin repeat and SOCS box-containing 11|ankyrin repeat and SOCS box containing 11|ankyrin repeat and SOCS box containing 11, E3 ubiquitin protein ligase" Ankyrin repeat domain containing 403 2004-05-27 2015-12-15 2016-10-05 140456 ENSG00000165192 OTTHUMG00000021173 uc004cwp.3 AF425642 NM_080873 "CCDS14164|CCDS35209|CCDS56596" Q8WXH4 24337577 MGI:1916104 RGD:1566298 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ASB11 ASB11 300626 +HGNC:19763 ASB12 ankyrin repeat and SOCS box containing 12 protein-coding gene gene with protein product Approved Xq11.2 Xq11.2 FLJ39577 ankyrin repeat and SOCS box-containing 12 Ankyrin repeat domain containing 403 2002-12-03 2011-01-25 2016-10-05 142689 ENSG00000198881 OTTHUMG00000021705 uc004dvr.3 AF403030 NM_130388 CCDS14378 Q8WXK4 12076535 MGI:1917642 RGD:1561142 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ASB12 ASB12 300891 +HGNC:19765 ASB13 ankyrin repeat and SOCS box containing 13 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "FLJ13134|MGC19879" ankyrin repeat and SOCS box-containing 13 Ankyrin repeat domain containing 403 2002-12-03 2011-01-25 2015-08-24 79754 ENSG00000196372 OTTHUMG00000017603 uc001iig.3 AK091935 NM_024701 CCDS7070 Q8WXK3 12076535 MGI:2145525 RGD:1310387 ASB13 615055 +HGNC:19766 ASB14 ankyrin repeat and SOCS box containing 14 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 DKFZp313L0121 ankyrin repeat and SOCS box-containing 14 Ankyrin repeat domain containing 403 2002-12-03 2011-01-25 2016-10-05 142686 ENSG00000239388 OTTHUMG00000158602 uc062kwt.1 AF403032 XM_017005736 CCDS46856 A6NK59 12076535 MGI:2655107 RGD:1596812 ASB14 +HGNC:19767 ASB15 ankyrin repeat and SOCS box containing 15 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 FLJ43370 ankyrin repeat and SOCS box-containing 15 Ankyrin repeat domain containing 403 2002-12-03 2011-01-25 2016-10-05 142685 ENSG00000146809 OTTHUMG00000157114 uc003vkv.2 AF403033 XM_011515816 CCDS34742 Q8WXK1 12076535 MGI:1926160 RGD:727860 ASB15 +HGNC:19768 ASB16 ankyrin repeat and SOCS box containing 16 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ30165 ankyrin repeat and SOCS box-containing 16 Ankyrin repeat domain containing 403 2002-12-03 2011-01-25 2013-01-10 92591 ENSG00000161664 OTTHUMG00000181809 uc002ifl.1 AK054727 NM_080863 CCDS11478 Q96NS5 12076535 MGI:2654437 RGD:1563878 ASB16 615056 +HGNC:25442 ASB16-AS1 ASB16 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 DKFZp762C2414 C17orf65 chromosome 17 open reading frame 65 2005-12-16 2012-10-11 2012-10-11 2014-11-19 339201 ENSG00000267080 OTTHUMG00000181810 uc002ifn.5 AL833953 NR_049729 Q495Z4 +HGNC:19769 ASB17 ankyrin repeat and SOCS box containing 17 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 ankyrin repeat and SOCS box-containing 17 Ankyrin repeat domain containing 403 2002-12-03 2011-01-25 2016-10-05 127247 ENSG00000154007 OTTHUMG00000009787 uc001dhe.2 AF403035 NM_080868 CCDS671 Q8WXJ9 12076535 MGI:1914022 RGD:1586533 ASB17 +HGNC:19770 ASB18 ankyrin repeat and SOCS box containing 18 protein-coding gene gene with protein product Approved 2q37.2 02q37.2 ankyrin repeat and SOCS box-containing 18 Ankyrin repeat domain containing 403 2002-12-03 2011-01-25 2014-11-19 401036 ENSG00000182177 OTTHUMG00000153086 uc010znh.2 AK123854 NM_212556 CCDS46548 Q6ZVZ8 12076535 MGI:2655109 RGD:1310850 ASB18 +HGNC:24268 ASCC1 activating signal cointegrator 1 complex subunit 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "CGI-18|ASC1p50|Em:AC022392.3" 2004-03-17 2014-11-19 51008 ENSG00000138303 OTTHUMG00000018434 uc021pso.1 AY013290 NM_015947 "CCDS31219|CCDS55713" Q8N9N2 "10810093|12077347" MGI:1916340 RGD:1359255 ASCC1 614215 297627 +HGNC:24103 ASCC2 activating signal cointegrator 1 complex subunit 2 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "ASC1p100|FLJ21588|DKFZp586O0223" ASC 1 complex subunit P100 2004-07-27 2016-10-05 84164 ENSG00000100325 OTTHUMG00000067658 uc003agr.4 AY013289 NM_032204 "CCDS13869|CCDS56226" Q9H1I8 "12077347|9847074" MGI:1922702 RGD:1561422 ASCC2 614216 +HGNC:18697 ASCC3 activating signal cointegrator 1 complex subunit 3 protein-coding gene gene with protein product Approved 6q16.3 06q16.3 "RNAH|ASC1p200|dJ121G13.4|dJ467N11.1" RNA helicase family HELIC1 helicase, ATP binding 1 "DNA helicases|RNA helicases" "1167|1168" 2003-11-26 2004-07-28 2016-10-05 10973 ENSG00000112249 OTTHUMG00000015279 uc003pqk.5 AJ223948 NM_006828 "CCDS5046|CCDS5047|CCDS75497" Q8N3C0 10218103 MGI:1925237 RGD:1307995 ASCC3 614217 +HGNC:738 ASCL1 achaete-scute family bHLH transcription factor 1 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 "ASH1|HASH1|bHLHa46" "achaete-scute complex (Drosophila) homolog-like 1|achaete-scute complex-like 1 (Drosophila)|achaete-scute complex homolog 1 (Drosophila)" Basic helix-loop-helix proteins 420 1993-12-09 2013-10-17 2016-01-15 429 ENSG00000139352 OTTHUMG00000169967 uc001tjr.5 L08424 NM_004316 CCDS31886 P50553 8390674 MGI:96919 RGD:71010 ASCL1 100790 159769 +HGNC:739 ASCL2 achaete-scute family bHLH transcription factor 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "ASH2|HASH2|bHLHa45" "achaete-scute complex (Drosophila) homolog-like 2|achaete-scute complex-like 2 (Drosophila)|achaete-scute complex homolog 2 (Drosophila)" Basic helix-loop-helix proteins 420 1996-04-12 2013-10-17 2014-11-19 430 ENSG00000183734 OTTHUMG00000009648 uc001lvu.4 NM_005170 CCDS7732 Q99929 9175731 MGI:96920 RGD:2159 ASCL2 601886 +HGNC:740 ASCL3 achaete-scute family bHLH transcription factor 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "bHLHa42|HASH3|Sgn1" "achaete-scute complex (Drosophila) homolog-like 3|achaete-scute complex homolog 3 (Drosophila)" Basic helix-loop-helix proteins 420 2000-07-31 2013-10-17 2016-10-05 56676 ENSG00000176009 OTTHUMG00000165679 uc057yvn.1 AJ400877 NM_020646 CCDS7795 Q9NQ33 11528127 MGI:1928820 RGD:621631 ASCL3 609154 +HGNC:24311 ASCL4 achaete-scute family bHLH transcription factor 4 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "HASH4|bHLHa44" "achaete-scute complex-like 4 (Drosophila)|achaete-scute complex homolog 4 (Drosophila)" Basic helix-loop-helix proteins 420 2004-05-21 2013-10-17 2016-10-05 121549 ENSG00000187855 OTTHUMG00000156964 uc001tmr.3 AY238895 NM_203436 CCDS31894 Q6XD76 MGI:1914591 RGD:1307533 ASCL4 609155 +HGNC:33169 ASCL5 achaete-scute family bHLH transcription factor 5 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 bHLHa47 achaete-scute complex homolog 5 (Drosophila) Basic helix-loop-helix proteins 420 2006-11-08 2013-10-17 2013-10-17 647219 ENSG00000232237 OTTHUMG00000057661 uc057ogk.1 XM_001719321.2 CCDS59202 Q7RTU5 MGI:2685043 RGD:1561854 ASCL5 +HGNC:741 ASD1 atrial septal defect 1 phenotype phenotype only Approved 5p15.31 05p15.31 1997-06-18 2007-11-16 431 9610535 108800 +HGNC:20995 ASF1A anti-silencing function 1A histone chaperone protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "DKFZP547E2110|CIA" ASF1 anti-silencing function 1 homolog A (S. cerevisiae) 2003-05-01 2013-05-01 2015-09-11 25842 ENSG00000111875 OTTHUMG00000015470 uc011ebn.3 AF279306 NM_014034 CCDS47469 Q9Y294 "10810093|11042152" MGI:1913653 RGD:1311941 ASF1A 609189 +HGNC:20996 ASF1B anti-silencing function 1B histone chaperone protein-coding gene gene with protein product Approved 19p13.12 19p13.12 FLJ10604 ASF1 anti-silencing function 1 homolog B (S. cerevisiae) 2003-05-01 2013-05-01 2015-09-11 55723 ENSG00000105011 OTTHUMG00000150401 uc002mye.4 AF279307 NM_018154 CCDS12306 Q9NVP2 "11897662|11470414" MGI:1914179 RGD:1304918 ASF1B 609190 +HGNC:742 ASGR1 asialoglycoprotein receptor 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 CLEC4H1 C-type lectin domain family 494 1988-05-24 2016-10-05 432 ENSG00000141505 OTTHUMG00000102159 uc002ges.5 NM_001671 "CCDS11089|CCDS56017" P07306 MGI:88081 RGD:2160 ASGR1 108360 +HGNC:743 ASGR2 asialoglycoprotein receptor 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 CLEC4H2 C-type lectin domain family 494 1988-05-24 2016-10-05 433 ENSG00000161944 OTTHUMG00000102158 uc002geq.4 M11025 NM_080914 "CCDS11088|CCDS32544|CCDS45598" P07307 3863106 MGI:88082 RGD:2161 ASGR2 108361 +HGNC:19088 ASH1L ASH1 like histone lysine methyltransferase protein-coding gene gene with protein product Approved 1q22 01q22 "huASH1|ASH1|ASH1L1|KMT2H" ash1 (absent, small, or homeotic)-like (Drosophila) "PHD finger proteins|Lysine methyltransferases" "88|487" 2003-08-06 2016-05-04 2016-05-04 55870 ENSG00000116539 OTTHUMG00000014011 uc001fkt.4 AB037841 NM_018489 CCDS1113 Q9NR48 "10860993|16545939" MGI:2183158 RGD:1306350 ASH1L 607999 objectId:2648 +HGNC:44146 ASH1L-AS1 ASH1L antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q22 01q22 ASH1L antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 645676 ENSG00000235919 OTTHUMG00000014012 uc057lqr.1 BC017347 NR_027023 +HGNC:41449 ASH1L-IT1 ASH1L intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q22 01q22 ASH1L intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 106478976 ENSG00000227773 OTTHUMG00000014015 uc057lqo.1 +HGNC:744 ASH2L ASH2 like histone lysine methyltransferase complex subunit protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "ASH2L2|ASH2|Bre2" ASH2L1 ash2 (absent, small, or homeotic)-like (Drosophila) PHD finger proteins 88 1998-12-03 2016-05-04 2016-10-05 9070 ENSG00000129691 OTTHUMG00000164016 uc003xkt.6 AF056717 NM_004674 "CCDS6101|CCDS47840|CCDS59100|CCDS64872" Q9UBL3 "10393421|21660059" MGI:1344416 RGD:1305632 ASH2L 604782 +HGNC:19332 ASH2LP1 ASH2 like histone lysine methyltransferase complex subunit pseudogene 1 pseudogene pseudogene Approved 22q11.22 22q11.22 ash2 (absent, small, or homeotic)-like (Drosophila) pseudogene 1 2002-10-03 2016-06-06 2016-06-06 266703 ENSG00000224144 OTTHUMG00000151071 NG_002378 PGOHUM00000246470 +HGNC:100 ASIC1 acid sensing ion channel subunit 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "BNaC2|hBNaC2" ACCN2 "amiloride-sensitive cation channel 2, neuronal|acid-sensing (proton-gated) ion channel 1|acid sensing (proton gated) ion channel 1" Acid sensing ion channel subunits 290 1997-09-05 2012-02-22 2015-12-14 2016-09-30 41 ENSG00000110881 OTTHUMG00000169812 uc001rvw.5 U78181 NM_020039 "CCDS8796|CCDS44876|CCDS58228" P78348 9037075 MGI:1194915 RGD:71062 602866 objectId:684 +HGNC:99 ASIC2 acid sensing ion channel subunit 2 protein-coding gene gene with protein product Approved 17q11.2-q12 17q11.2-q12 "ASIC2a|BNC1|BNaC1|hBNaC1|MDEG" degenerin "ACCN|ACCN1" "amiloride-sensitive cation channel 1, neuronal|acid-sensing (proton-gated) ion channel 2" Acid sensing ion channel subunits 290 1997-05-22 2012-02-22 2015-12-14 2016-10-11 40 ENSG00000108684 OTTHUMG00000132885 uc002hhu.4 AL834182 "NM_183377|NM_001094" "CCDS11276|CCDS42296" Q16515 8921408 MGI:1100867 RGD:2017 601784 objectId:685 +HGNC:101 ASIC3 acid sensing ion channel subunit 3 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "TNaC1|DRASIC" testis sodium channel 1 ACCN3 "amiloride-sensitive cation channel 3, testis|acid-sensing (proton-gated) ion channel 3" Acid sensing ion channel subunits 290 1999-05-04 2012-02-22 2015-12-14 2016-10-05 9311 ENSG00000213199 OTTHUMG00000158685 uc003wio.4 AB010575 NM_004769 "CCDS5914|CCDS5915|CCDS5916" Q9UHC3 "9571199|9744806" MGI:2159339 RGD:708578 611741 objectId:686 +HGNC:21263 ASIC4 acid sensing ion channel subunit family member 4 protein-coding gene gene with protein product Approved 2q35 02q35 BNAC4 ACCN4 "amiloride-sensitive cation channel 4, pituitary|acid-sensing (proton-gated) ion channel family member 4|acid sensing ion channel family member 4" Acid sensing ion channel subunits 290 2003-06-05 2012-02-22 2015-12-14 2016-10-05 55515 ENSG00000072182 OTTHUMG00000058928 uc061syq.1 AJ271643 NM_018674 CCDS2442 Q96FT7 10852210 MGI:2652846 RGD:621068 606715 +HGNC:17537 ASIC5 acid sensing ion channel subunit family member 5 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "INAC|HINAC" ACCN5 "amiloride-sensitive cation channel 5, intestinal|acid-sensing (proton-gated) ion channel family member 5" Acid sensing ion channel subunits 290 2003-06-05 2012-03-02 2015-12-14 2015-12-14 51802 ENSG00000256394 OTTHUMG00000161941 uc003ipe.1 AJ252011 XM_017008291 CCDS3793 Q9NY37 10767424 MGI:1929259 RGD:69295 616693 +HGNC:745 ASIP agouti signaling protein protein-coding gene gene with protein product Approved 20q11.22 20q11.22 ASP nonagouti homolog (mouse) AGTIL "agouti (mouse)-signaling protein|agouti signaling protein, nonagouti homolog (mouse)" 1995-01-03 2010-06-24 2016-10-05 434 ENSG00000101440 OTTHUMG00000032289 uc061wig.1 XM_005260412 CCDS13232 P42127 "7937887|7757071" MGI:87853 RGD:2003 ASIP 600201 +HGNC:746 ASL argininosuccinate lyase protein-coding gene gene with protein product Approved 7q11.21 07q11.21 2001-06-22 2015-08-24 435 ENSG00000126522 OTTHUMG00000022876 uc003tuo.4 NM_000048 "CCDS5531|CCDS47597|CCDS47598" P04424 MGI:88084 RGD:619974 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=ASL ASL 608310 121455 4.3.2.1 +HGNC:747 ASLP1 argininosuccinate lyase pseudogene 1 pseudogene pseudogene Approved 22q11.23 22q11.23 ASLL argininosuccinate lyase-like 1986-01-01 2010-09-30 2010-09-30 2010-09-30 436 ENSG00000244723 OTTHUMG00000150707 NG_002637 PGOHUM00000250321 +HGNC:750 ASMT acetylserotonin O-methyltransferase protein-coding gene gene with protein product Approved Xp22.3 and Yp11.3 Xp22.3 and Yp11.3 "HIOMT|ASMTY|HIOMTY" Pseudoautosomal region 1 715 1992-12-11 2015-08-24 438 ENSG00000196433 OTTHUMG00000021065 uc065cod.1 M83779 NM_004043 "CCDS14117|CCDS55364" P46597 "8397829|7989373" MGI:96090 RGD:708472 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ASMT ASMT "300015|402500" 2.1.1.4 +HGNC:751 ASMTL acetylserotonin O-methyltransferase-like protein-coding gene gene with protein product Approved Xp22.3 and Yp11.3 Xp22.3 and Yp11.3 Pseudoautosomal region 1 715 1999-05-07 2014-11-18 8623 ENSG00000169093 OTTHUMG00000021057 uc004fpk.3 Y15521 NM_004192 "CCDS43917|CCDS55362|CCDS55363" O95671 9736779 RGD:1306877 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ASMTL ASMTL "300162|400011" +HGNC:25811 ASMTL-AS1 ASMTL antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 FLJ13330 "CXYorf2|NCRNA00105|ASMTLAS|ASMTL-AS" "chromosome X and Y open reading frame 2|non-protein coding RNA 105|ASMTL antisense RNA (non-protein coding)|ASMTL antisense RNA 1 (non-protein coding)" Pseudoautosomal region 1 715 2004-06-16 2010-11-25 2012-08-15 2014-11-19 80161 ENSG00000236017 OTTHUMG00000021056 uc065cnu.1 AK023392 XR_040863 14702039 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ASMTL-AS1 ASMTL-AS1 +HGNC:752 ASNA1 arsA arsenite transporter, ATP-binding, homolog 1 (bacterial) protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "ARSA-I|GET3|TRC40" "golgi to ER traffic 3 homolog (S. cerevisiae)|transmembrane domain recognition complex, 40kDa" arsA (bacterial) arsenite transporter, ATP-binding, homolog 1 1997-07-01 2001-12-04 2014-11-19 439 ENSG00000198356 OTTHUMG00000180355 uc060uci.1 U60276 NM_004317 CCDS32920 O43681 "8884272|17382883" MGI:1928379 RGD:1307906 ASNA1 601913 +HGNC:753 ASNS asparagine synthetase (glutamine-hydrolyzing) protein-coding gene gene with protein product Approved 7q21.3 07q21.3 asparagine synthetase 2001-06-22 2010-05-07 2014-11-19 440 ENSG00000070669 OTTHUMG00000022892 uc003uou.5 M27396 "NM_001673|NM_183356" "CCDS5652|CCDS55131|CCDS55132" P08243 MGI:1350929 RGD:2162 ASNS 108370 394593 C44.974 6.3.5.4 +HGNC:24910 ASNSD1 asparagine synthetase domain containing 1 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 "NS3TP1|FLJ20752|NBLA00058" 2006-02-13 2015-08-28 54529 ENSG00000138381 OTTHUMG00000132665 uc002uqt.4 AY116969 NM_019048 CCDS2300 Q9NWL6 MGI:1917646 RGD:1306332 ASNSD1 +HGNC:754 ASNSP1 asparagine synthetase pseudogene 1 pseudogene pseudogene Approved 8q11.1 08q11.1 ASNSL1 asparagine synthetase-like 1 1989-05-25 2010-03-17 2010-03-17 2014-11-19 389652 ENSG00000248498 OTTHUMG00000165535 NG_007178 PGOHUM00000249318 +HGNC:755 ASNSP2 asparagine synthetase pseudogene 2 pseudogene pseudogene Approved 21p11.2 21p11.2 ASNSL2 asparagine synthetase-like 2 1989-05-25 2010-03-17 2010-03-17 2014-11-19 442 NG_029775 PGOHUM00000239104 +HGNC:39399 ASNSP3 asparagine synthetase pseudogene 3 pseudogene pseudogene Approved 13q32.3 13q32.3 2010-12-03 2010-12-03 100423061 ENSG00000236554 OTTHUMG00000017282 NG_021205 PGOHUM00000248482 +HGNC:39400 ASNSP4 asparagine synthetase pseudogene 4 pseudogene pseudogene Approved 8q11.1 08q11.1 2010-12-03 2010-12-03 100419423 ENSG00000251470 OTTHUMG00000160508 NG_026098 PGOHUM00000249646 +HGNC:39401 ASNSP5 asparagine synthetase pseudogene 5 pseudogene pseudogene Approved 1q21.1 01q21.1 2010-12-03 2015-01-29 100873794 OTTHUMG00000085411 NG_032287 PGOHUM00000244888 +HGNC:49876 ASNSP6 asparagine synthetase pseudogene 6 pseudogene pseudogene Approved 18p11.21 18p11.21 asparagine synthetase (glutamine-hydrolyzing) pseudogene 6 2014-03-18 2016-06-27 2016-06-27 100423060 ENSG00000267333 OTTHUMG00000180610 NG_021204 PGOHUM00000234995 +HGNC:756 ASPA aspartoacylase protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "ASP|ACY2" "aminoacylase 2|Canavan disease" aspartoacylase (aminoacylase 2, Canavan disease) 1993-12-09 2010-06-24 2016-10-05 443 ENSG00000108381 OTTHUMG00000090655 uc002fvq.4 S67156 NM_000049 CCDS11028 P45381 8252036 MGI:87914 RGD:621693 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/vumc/home.php?select_db=ASPA ASPA 608034 121457 3.5.1.15 +HGNC:33856 ASPDH aspartate dehydrogenase domain containing protein-coding gene gene with protein product Approved 19q13.33 19q13.33 2009-01-15 2012-10-02 554235 ENSG00000204653 OTTHUMG00000183057 uc010enz.4 NM_001024656 "CCDS33082|CCDS46153" A6ND91 MGI:1915602 RGD:1310111 ASPDH +HGNC:20123 ASPG asparaginase protein-coding gene gene with protein product Approved 14q32.33 14q32.33 60-kDa-lysophospholipase C14orf76 "chromosome 14 open reading frame 76|asparaginase homolog (S. cerevisiae)" Ankyrin repeat domain containing 403 2002-12-18 2008-11-06 2014-03-14 2016-04-25 374569 ENSG00000166183 OTTHUMG00000170045 uc001yoq.3 NM_001080464 CCDS45170 Q86U10 MGI:2144822 RGD:708388 ASPG objectId:2762 "3.1.1.5|3.5.1.1" +HGNC:757 ASPH aspartate beta-hydroxylase protein-coding gene gene with protein product Approved 8q12.3 08q12.3 "CASQ2BP1|BAH|JCTN|HAAH" "junctin|humbug|junctate" 1995-06-13 2016-10-05 444 ENSG00000198363 OTTHUMG00000164375 uc003xuj.4 AF224468 NM_004318 "CCDS34898|CCDS34899|CCDS34900|CCDS43742|CCDS47866|CCDS55234|CCDS55235|CCDS55236|CCDS55237|CCDS55238|CCDS75746" Q12797 "7821814|10974562" MGI:1914186 RGD:1312000 ASPH 600582 422966 1.14.11.16 +HGNC:27380 ASPHD1 aspartate beta-hydroxylase domain containing 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2006-01-31 2015-09-07 253982 ENSG00000174939 OTTHUMG00000132121 uc002dut.4 AF070642 NM_181718 CCDS10660 Q5U4P2 MGI:2685014 RGD:1306636 ASPHD1 +HGNC:30437 ASPHD2 aspartate beta-hydroxylase domain containing 2 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 FLJ39838 2006-01-31 2014-11-19 57168 ENSG00000128203 OTTHUMG00000150884 uc003acg.3 AK097157 NM_020437 CCDS13834 Q6ICH7 MGI:1920148 RGD:1306020 ASPHD2 +HGNC:19048 ASPM abnormal spindle microtubule assembly protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "Calmbp1|ASP|FLJ10517|FLJ10549" MCPH5 "microcephaly, primary autosomal recessive 5|asp (abnormal spindle)-like, microcephaly associated (Drosophila)|asp (abnormal spindle) homolog, microcephaly associated (Drosophila)" 2002-08-13 2015-08-14 2016-10-05 259266 ENSG00000066279 OTTHUMG00000036277 uc001gtu.4 AY367065 NM_018136 "CCDS1389|CCDS55672" Q8IZT6 11078481 MGI:1334448 RGD:1307111 ASPM 605481 121461 +HGNC:14872 ASPN asporin protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "FLJ20129|SLRR1C|PLAP1" asporin proteoglycan asporin (LRR class 1) Small leucine rich repeat proteoglycans 573 2001-03-21 2007-02-15 2015-09-11 54829 ENSG00000106819 OTTHUMG00000020227 uc004ase.3 AF316824 NM_017680 Q9BXN1 MGI:1913945 RGD:1549776 ASPN 608135 +HGNC:26321 ASPRV1 aspartic peptidase, retroviral-like 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "Taps|SASPase|FLJ25084" Skin ASpartic Protease 2008-02-20 2014-11-19 151516 ENSG00000244617 OTTHUMG00000129647 uc002sfz.6 AK055994 NM_152792 CCDS1897 Q53RT3 "16098038|16565508" MGI:1915105 RGD:1560859 ASPRV1 611765 A28.004 +HGNC:13825 ASPSCR1 ASPSCR1, UBX domain containing tether for SLC2A4 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "ASPS|ASPL|UBXD9|UBXN9|TUG" "UBX domain protein 9|Tether containing UBX domain for GLUT4" alveolar soft part sarcoma chromosome region, candidate 1 UBX domain containing 364 2001-04-05 2016-05-24 2016-10-07 79058 ENSG00000169696 OTTHUMG00000178438 uc002kcx.3 AF324219 NM_024083 "CCDS11796|CCDS58611|CCDS82222" Q9BZE9 "11244503|10506710" MGI:1916188 RGD:1588666 ASPSCR1 606236 168413 +HGNC:16448 ASRGL1 asparaginase like 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "FLJ22316|ALP1|ALP" asparaginase-like 1 protein 2001-08-29 2015-09-11 80150 ENSG00000162174 OTTHUMG00000167513 uc001ntf.5 NM_001083926 CCDS8019 Q7L266 MGI:1913764 RGD:708526 ASRGL1 609212 T02.002 +HGNC:758 ASS1 argininosuccinate synthase 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 CTLN1 ASS argininosuccinate synthetase 2001-06-22 2006-08-24 2010-04-20 2016-10-05 445 ENSG00000130707 OTTHUMG00000020806 uc004bzn.4 X01630 NM_000050 CCDS6933 P00966 "3513483|852520" MGI:88090 RGD:2163 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=ASS1|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=ASS1" ASS1 603470 121468 6.3.4.5 +HGNC:759 ASS1P1 argininosuccinate synthetase 1 pseudogene 1 pseudogene pseudogene Approved 6p22.3 06p22.3 ASSP1 argininosuccinate synthetase pseudogene 1 1986-01-01 2010-01-08 2010-01-08 2014-11-19 442167 ENSG00000220517 OTTHUMG00000014378 K01845 NG_001077 "6093508|1440058" PGOHUM00000243077 +HGNC:765 ASS1P2 argininosuccinate synthetase 1 pseudogene 2 pseudogene pseudogene Approved 2p22.1 02p22.1 ASSP2 argininosuccinate synthetase pseudogene 2 2001-06-22 2010-01-08 2010-01-08 2014-11-19 447 ENSG00000223922 OTTHUMG00000153539 NG_000845 6093508 PGOHUM00000240018 +HGNC:766 ASS1P3 argininosuccinate synthetase 1 pseudogene 3 pseudogene pseudogene Approved 9q21.2 09q21.2 ASSP3 argininosuccinate synthetase pseudogene 3 2001-06-22 2010-01-08 2010-01-08 2012-10-02 158452 NG_012998 6093508 +HGNC:767 ASS1P4 argininosuccinate synthetase 1 pseudogene 4 pseudogene pseudogene Approved Xp22.33 Xp22.33 ASSP4 argininosuccinate synthetase pseudogene 4 2001-06-22 2010-01-08 2010-01-08 2014-11-19 449 ENSG00000213487 OTTHUMG00000021084 NG_000846 6093508 PGOHUM00000241628 +HGNC:768 ASS1P5 argininosuccinate synthetase 1 pseudogene 5 pseudogene pseudogene Approved Xq23 Xq23 ASSP5 argininosuccinate synthetase pseudogene 5 2001-06-22 2010-01-08 2010-01-08 2014-11-19 450 ENSG00000227881 OTTHUMG00000022236 NG_000847 6093508 PGOHUM00000241961 +HGNC:769 ASS1P6 argininosuccinate synthetase 1 pseudogene 6 pseudogene pseudogene Approved Yq11.21 Yq11.21 ASSP6 argininosuccinate synthetase pseudogene 6 2001-06-22 2010-01-08 2010-01-08 2014-11-19 451 ENSG00000215583 OTTHUMG00000036286 NG_000848 6093508 PGOHUM00000233744 +HGNC:770 ASS1P7 argininosuccinate synthetase 1 pseudogene 7 pseudogene pseudogene Approved 3q26.32 03q26.32 ASSP7 argininosuccinate synthetase pseudogene 7 2001-06-22 2010-01-08 2010-01-08 2014-11-19 339845 ENSG00000236893 OTTHUMG00000157232 NG_001079 6093508 PGOHUM00000237873 +HGNC:771 ASS1P8 argininosuccinate synthetase 1 pseudogene 8 pseudogene pseudogene Approved 4q31.23 04q31.23 ASSP8 argininosuccinate synthetase pseudogene 8 2001-06-22 2010-01-08 2010-01-08 2016-10-05 453 ENSG00000251418 OTTHUMG00000161456 NG_003009 "6093508|2435915" PGOHUM00000300029 +HGNC:772 ASS1P9 argininosuccinate synthetase 1 pseudogene 9 pseudogene pseudogene Approved 5q11.2 05q11.2 ASSP9 argininosuccinate synthetase pseudogene 9 2001-06-22 2010-01-08 2010-01-08 2014-11-19 454 ENSG00000217791 OTTHUMG00000162285 NG_003022 "6093508|2435915" PGOHUM00000235588 +HGNC:760 ASS1P10 argininosuccinate synthetase 1 pseudogene 10 pseudogene pseudogene Approved 5q32 05q32 ASSP10 argininosuccinate synthetase pseudogene 10 2001-06-22 2010-01-08 2010-01-08 2014-11-19 455 ENSG00000215325 OTTHUMG00000163346 NG_003021 "6093508|2435915" PGOHUM00000235803 +HGNC:761 ASS1P11 argininosuccinate synthetase 1 pseudogene 11 pseudogene pseudogene Approved 7p15.3 07p15.3 TCAG_1641141 ASSP11 argininosuccinate synthetase pseudogene 11 1986-01-01 2010-01-08 2010-01-08 2014-11-19 340274 ENSG00000225308 OTTHUMG00000152549 NG_008639 6093508 PGOHUM00000232607 +HGNC:762 ASS1P12 argininosuccinate synthetase 1 pseudogene 12 pseudogene pseudogene Approved 9p21.1 09p21.1 ASSP12 argininosuccinate synthetase pseudogene 12 1986-01-01 2010-01-08 2010-01-08 2016-10-05 392302 ENSG00000237437 OTTHUMG00000019754 NG_005207 6093508 PGOHUM00000261536 +HGNC:763 ASS1P13 argininosuccinate synthetase 1 pseudogene 13 pseudogene pseudogene Approved 11q22.3 11q22.3 ASSP13 argininosuccinate synthetase pseudogene 13 2001-06-22 2010-01-08 2010-01-08 2014-11-19 341230 NG_011669 6093508 PGOHUM00000242888 +HGNC:764 ASS1P14 argininosuccinate synthetase 1 pseudogene 14 pseudogene pseudogene Approved 12p11.21 12p11.21 ASSP14 argininosuccinate synthetase pseudogene 14 2001-06-22 2010-01-08 2010-01-08 2014-11-19 459 NG_001078 6093508 PGOHUM00000239734 +HGNC:25021 ASTE1 asteroid homolog 1 (Drosophila) protein-coding gene gene with protein product Approved 3q22.1 03q22.1 HT001 2005-11-01 2016-10-05 28990 ENSG00000034533 OTTHUMG00000159644 uc003env.3 AF113539 NM_014065 "CCDS3068|CCDS75007" Q2TB18 MGI:1913845 RGD:1304643 ASTE1 +HGNC:31704 ASTL astacin like metalloendopeptidase protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "ovastacin|SAS1B" sperm acrosomal SLLP1 binding astacin-like metallo-endopeptidase (M12 family) Astacins 894 2004-07-01 2016-08-10 2016-10-05 431705 ENSG00000188886 OTTHUMG00000155212 uc010yui.2 AJ537600 XM_011511205 CCDS33249 Q6HA08 15087446 MGI:3046414 RGD:1562279 ASTL 608860 M12.245 3.4.24.21 +HGNC:773 ASTN1 astrotactin 1 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 ASTN astrotactin Fibronectin type III domain containing 555 1996-08-12 2006-08-24 2006-08-24 2014-11-18 460 ENSG00000152092 OTTHUMG00000035041 uc001glc.5 AB006627 NM_004319 "CCDS1319|CCDS44280|CCDS65732" O14525 9070947 MGI:1098567 RGD:727799 ASTN1 600904 +HGNC:17021 ASTN2 astrotactin 2 protein-coding gene gene with protein product Approved 9q33.1 09q33.1 KIAA0634 Fibronectin type III domain containing 555 2001-10-18 2016-10-05 23245 ENSG00000148219 OTTHUMG00000021013 uc004bjt.3 AF116574 NM_014010 "CCDS48009|CCDS55334|CCDS6814|CCDS6815" O75129 9734811 MGI:1889277 RGD:2320342 ASTN2 612856 +HGNC:51175 ASTN2-AS1 ASTN2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q33.1 09q33.1 2014-07-31 2014-07-31 100128505 ENSG00000229105 OTTHUMG00000020556 AK097822 NR_033973 +HGNC:20174 ASUN asunder, spermatogenesis regulator protein-coding gene gene with protein product Approved 12p11.23 12p11.23 "FLJ10637|NET48|Mat89Bb|SPATA30" spermatogenesis associated 30 C12orf11 "chromosome 12 open reading frame 11|asunder, spermatogenesis regulator homolog (Drosphila)" 2004-12-07 2011-12-09 2016-03-07 2016-10-05 55726 ENSG00000064102 OTTHUMG00000169193 uc001rhk.5 AK001222 NM_018164 CCDS8708 Q9NVM9 "12414650|19357193|23097494" MGI:1918427 RGD:1592236 615079 +HGNC:774 ASVS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:18318 ASXL1 additional sex combs like 1, transcriptional regulator protein-coding gene gene with protein product Approved 20q11.21 20q11.21 KIAA0978 additional sex combs like 1 (Drosophila) 2002-03-06 2015-11-26 2016-10-12 171023 ENSG00000171456 OTTHUMG00000032218 uc061wej.1 AJ438952 NM_015338 CCDS13201 Q8IXJ9 12657473 MGI:2684063 RGD:1561878 LRG_630|http://www.lrg-sequence.org/LRG/LRG_630 ASXL1 612990 281482 +HGNC:23805 ASXL2 additional sex combs like 2, transcriptional regulator protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "ASXH2|FLJ10898|KIAA1685" additional sex combs like 2 (Drosophila) 2003-12-11 2015-11-26 2016-10-05 55252 ENSG00000143970 OTTHUMG00000152176 uc061hgj.1 NM_018263 Q76L83 12888926 MGI:1922552 RGD:1304710 ASXL2 612991 +HGNC:29357 ASXL3 additional sex combs like 3, transcriptional regulator protein-coding gene gene with protein product Approved 18q12.1 18q12.1 KIAA1713 "KIAA1713|additional sex combs like 3 (Drosophila)" 2005-01-11 2007-02-01 2015-11-26 2016-10-05 80816 ENSG00000141431 OTTHUMG00000178395 uc010dmg.2 AB051500 XM_011526205 CCDS45847 Q9C0F0 11214970 MGI:2685175 RGD:1305869 ASXL3 615115 356141 +HGNC:1350 ASZ1 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding gene gene with protein product Approved 7q31.2 07q31.2 "Orf3|GASZ|ALP1|CT1.19" "C7orf7|ANKL1" ankyrin-like 1 "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 1999-08-23 2004-07-16 2005-03-15 2014-11-19 136991 ENSG00000154438 OTTHUMG00000064565 uc003vjb.2 AF461259 NM_130768 CCDS5772 Q8WWH4 "12040005|11279520" MGI:1921318 RGD:621579 ASZ1 605797 +HGNC:25903 ATAD1 ATPase family, AAA domain containing 1 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 FLJ14600 AAA ATPases 413 2004-03-24 2007-02-08 2014-11-18 84896 ENSG00000138138 OTTHUMG00000018685 uc001kez.2 AL834370 NM_032810 CCDS7386 Q8NBU5 12477932 MGI:1915229 RGD:1308570 ATAD1 614452 +HGNC:30123 ATAD2 ATPase family, AAA domain containing 2 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "PRO2000|DKFZp667N1320|MGC5254|MGC29843|CT137" AAA ATPases 413 2004-03-24 2007-02-08 2014-11-19 29028 ENSG00000156802 OTTHUMG00000165090 uc003yqh.5 BC019909 NM_014109 CCDS6343 Q6PL18 12477932 MGI:1917722 RGD:1304849 ATAD2 611941 objectId:2719 +HGNC:29230 ATAD2B ATPase family, AAA domain containing 2B protein-coding gene gene with protein product Approved 2p24.1-p23.3 02p24.1-p23.3 KIAA1240 AAA ATPases 413 2006-11-28 2007-02-08 2016-10-11 54454 ENSG00000119778 OTTHUMG00000151902 uc002rek.5 AB033066 NM_017552 CCDS46227 Q9ULI0 MGI:2444798 RGD:1566199 ATAD2B 615347 objectId:2720 +HGNC:25567 ATAD3A ATPase family, AAA domain containing 3A protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ10709 AAA ATPases 413 2004-03-24 2007-02-08 2014-11-19 55210 ENSG00000197785 OTTHUMG00000000575 uc001aga.3 AK025865 NM_018188 "CCDS31|CCDS53259|CCDS53260" Q9NVI7 12477932 MGI:1919214 RGD:1305964 ATAD3A 612316 +HGNC:24007 ATAD3B ATPase family, AAA domain containing 3B protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "TOB3|KIAA1273" AAA ATPases 413 2004-03-24 2007-02-08 2015-09-11 83858 ENSG00000160072 OTTHUMG00000000577 uc001afv.4 AL834179 NM_031921 CCDS30 Q5T9A4 10574462 MGI:1919214 ATAD3B 612317 +HGNC:32151 ATAD3C ATPase family, AAA domain containing 3C protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ34599 AAA ATPases 413 2005-07-15 2007-02-08 2015-09-11 219293 ENSG00000215915 OTTHUMG00000000531 uc001aft.2 AK091918 NM_001039211 CCDS44039 Q5T2N8 MGI:1919214 ATAD3C +HGNC:25752 ATAD5 ATPase family, AAA domain containing 5 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "FLJ12735|FRAG1|ELG1" enhanced level of genomic instability 1 homolog (S. cerevisiae) C17orf41 chromosome 17 open reading frame 41 AAA ATPases 413 2005-05-24 2007-02-08 2007-02-08 2014-11-18 79915 ENSG00000176208 OTTHUMG00000132794 uc002hfs.2 NM_024857 CCDS11260 Q96QE3 "15983387|11468690|19755857" MGI:2442925 RGD:1561464 ATAD5 609534 +HGNC:21186 ATAT1 alpha tubulin acetyltransferase 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "FLJ13158|Em:AB023049.7|MEC17" alpha-tubulin N-acetyltransferase C6orf134 chromosome 6 open reading frame 134 2003-06-02 2010-10-11 2010-10-11 2016-10-05 79969 ENSG00000137343 OTTHUMG00000031219 uc003nqs.5 AK023220 NM_024909 "CCDS4683|CCDS54978|CCDS59002|CCDS83072|CCDS83073" Q5SQI0 20829795 MGI:1913869 RGD:1303066 ATAT1 615556 2.3.1.108 +HGNC:779 ATCAY ATCAY, caytaxin protein-coding gene gene with protein product Approved 19p13.3 19p13.3 BNIP-H "Cayman ataxia|caytaxin" ataxia, cerebellar, Cayman type BCH domain containing 1299 1997-01-10 2016-06-21 2016-06-21 85300 ENSG00000167654 OTTHUMG00000181836 uc002lyy.5 NM_033064 CCDS45923 Q86WG3 "8845847|14556008" MGI:2448730 RGD:1309312 ATCAY 608179 121472 +HGNC:780 ATD asphixiating thoracic dystrophy (chondroectodermal dysplasia-like syndrome) phenotype phenotype only Approved 12p12.2-p11.21 12p12.2-p11.21 1995-12-19 2014-02-12 465 7702088 208500 +HGNC:782 ATE1 arginyltransferase 1 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 1999-09-07 2016-10-05 11101 ENSG00000107669 OTTHUMG00000019178 uc010qtr.3 AF079098 NM_001001976 "CCDS31299|CCDS31300|CCDS73211|CCDS73212|CCDS73213" O95260 "16002466|16943202" MGI:1333870 RGD:1309335 ATE1 607103 2.3.2.8 +HGNC:49496 ATE1-AS1 ATE1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q26.13 10q26.13 ENST00000437593 "ATE1 antisense RNA 1|ATE1 antisense RNA 1 (head to head)" 2013-12-20 2015-04-22 2015-04-22 100130887 ENSG00000226864 OTTHUMG00000019179 NR_120495 +HGNC:783 ATF1 activating transcription factor 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 TREB36 Basic leucine zipper proteins 506 1994-03-16 2016-10-05 466 ENSG00000123268 OTTHUMG00000169482 uc001rww.5 BC029619 NM_005171 CCDS8803 P18846 8401579 MGI:1298366 RGD:1307360 ATF1 123803 201770 +HGNC:37691 ATF1P1 activating transcription factor 1 pseudogene 1 pseudogene pseudogene Approved 6q16.1 06q16.1 2010-01-14 2014-11-18 100128159 ENSG00000219387 OTTHUMG00000015225 NG_016455 PGOHUM00000243295 +HGNC:784 ATF2 activating transcription factor 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "TREB7|CRE-BP1|HB16" CREB2 cAMP responsive element binding protein 2 Basic leucine zipper proteins 506 1991-08-01 2016-10-05 1386 ENSG00000115966 OTTHUMG00000132424 uc010fqu.5 X15875 NM_001880 "CCDS2262|CCDS58737|CCDS58738|CCDS58739" P15336 "1833307|1838349" MGI:109349 RGD:621862 ATF2 123811 +HGNC:785 ATF3 activating transcription factor 3 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 Basic leucine zipper proteins 506 1994-08-03 2014-11-19 467 ENSG00000162772 OTTHUMG00000036747 uc001hjf.4 L19871 NM_001674 "CCDS1506|CCDS41464|CCDS55688|CCDS58059" P18847 7515060 MGI:109384 RGD:2165 ATF3 603148 +HGNC:786 ATF4 activating transcription factor 4 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "TAXREB67|CREB-2" tax-responsive enhancer element B67 TXREB activating transcription factor 4 (tax-responsive enhancer element B67) Basic leucine zipper proteins 506 1992-06-09 2013-05-23 2015-08-24 468 ENSG00000128272 OTTHUMG00000151099 uc021wpz.2 D90209 NM_001675 CCDS13996 P18848 "1847461|1534408" MGI:88096 RGD:621863 ATF4 604064 +HGNC:789 ATF4P1 activating transcription factor 4 pseudogene 1 pseudogene pseudogene Approved Xq28 Xq28 TAXREB67P "TXREBP|ATF4P" activating transcription factor 4 pseudogene (tax-responsive enhancer element B67 pseudogene) 1994-01-31 2008-03-17 2008-03-17 2015-07-29 469 ENSG00000213338 OTTHUMG00000189741 U03712 NG_001080 8088803 PGOHUM00000241613 +HGNC:34025 ATF4P2 activating transcription factor 4 pseudogene 2 pseudogene pseudogene Approved Xq28 Xq28 2008-03-17 2015-01-29 340600 ENSG00000273041 OTTHUMG00000188664 NG_002951 PGOHUM00000305402 +HGNC:788 ATF4P3 activating transcription factor 4 pseudogene 3 pseudogene pseudogene Approved 17q25.1 17q25.1 ATF4C activating transcription factor 4C 1999-10-28 2010-12-16 2010-12-16 2010-12-16 643159 ENSG00000228218 OTTHUMG00000132653 NG_009319 10610718 +HGNC:787 ATF4P4 activating transcription factor 4 pseudogene 4 pseudogene pseudogene Approved 11q23.2 11q23.2 ATF4B activating transcription factor 4B 1999-10-28 2010-12-16 2010-12-16 2011-09-02 100127952 ENSG00000256167 OTTHUMG00000168194 NG_021835 10610718 PGOHUM00000242898 +HGNC:790 ATF5 activating transcription factor 5 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 Basic leucine zipper proteins 506 2000-03-22 2014-11-19 22809 ENSG00000169136 OTTHUMG00000183065 uc002prd.4 AF101388 XM_011526629 CCDS12789 Q9Y2D1 10373550 MGI:2141857 RGD:628902 ATF5 606398 +HGNC:791 ATF6 activating transcription factor 6 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 ATF6A activating transcription factor 6 alpha Basic leucine zipper proteins 506 1999-12-15 2015-09-11 22926 ENSG00000118217 OTTHUMG00000023961 uc001gbs.4 AB015856 NM_007348 CCDS1235 P18850 "9837962|9271374|11256944" MGI:1926157 RGD:1305471 ATF6 605537 436836 +HGNC:2349 ATF6B activating transcription factor 6 beta protein-coding gene gene with protein product Approved 6p21.3 06p21.3 G13 CREBL1 cAMP responsive element binding protein-like 1 Basic leucine zipper proteins 506 1995-10-09 2008-10-21 2008-10-21 2015-08-28 1388 ENSG00000213676 OTTHUMG00000031296 uc011git.3 NM_004381 "CCDS47408|CCDS4737" Q99941 "11256944|14973138" MGI:105121 RGD:1303317 ATF6B 600984 +HGNC:792 ATF7 activating transcription factor 7 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 ATFA Basic leucine zipper proteins 506 2000-06-13 2016-01-15 11016 ENSG00000170653 OTTHUMG00000169776 uc001sdz.4 X52943 NM_001130059 "CCDS44906|CCDS58238" P17544 "1694576|11278933" MGI:2443472 RGD:1304940 ATF7 606371 +HGNC:20092 ATF7IP activating transcription factor 7 interacting protein protein-coding gene gene with protein product Approved 12p13.1 12p13.1 "FLJ10688|p621" Fibronectin type III domain containing 555 2002-12-17 2015-08-24 55729 ENSG00000171681 OTTHUMG00000168656 uc001rbw.4 AJ242978 NM_018179 "CCDS8663|CCDS66326|CCDS66327|CCDS73449" Q6VMQ6 "10976766|10777215" MGI:1858965 RGD:1306030 ATF7IP 613644 +HGNC:20397 ATF7IP2 activating transcription factor 7 interacting protein 2 protein-coding gene gene with protein product Approved 16p13.2-p13.13 16p13.2-p13.13 FLJ12668 Fibronectin type III domain containing 555 2003-04-03 2016-10-11 80063 ENSG00000166669 OTTHUMG00000129749 uc002czu.3 AK022730 NM_024997 "CCDS10540|CCDS58422" Q5U623 MGI:1922579 RGD:1583744 ATF7IP2 613645 +HGNC:29028 ATG2A autophagy related 2A protein-coding gene gene with protein product Approved 11q13.1 11q13.1 KIAA0404 ATG2 autophagy related 2 homolog A (S. cerevisiae) Autophagy related 1022 2007-07-31 2012-06-06 2015-09-11 23130 ENSG00000110046 OTTHUMG00000066831 uc001obx.4 NM_015104 CCDS31602 Q2TAZ0 21887408 MGI:1916291 RGD:1589890 ATG2A 616225 +HGNC:20187 ATG2B autophagy related 2B protein-coding gene gene with protein product Approved 14q32.2 14q32.2 FLJ10242 C14orf103 "chromosome 14 open reading frame 103|ATG2 autophagy related 2 homolog B (S. cerevisiae)" Autophagy related 1022 2002-12-20 2007-07-31 2012-06-06 2016-10-05 55102 ENSG00000066739 OTTHUMG00000149933 uc001yfi.4 AK001104 NM_018036 CCDS9944 Q96BY7 22350415 MGI:1923809 RGD:1304878 ATG2B 616226 +HGNC:20962 ATG3 autophagy related 3 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "PC3-96|FLJ22125|MGC15201|DKFZp564M1178" APG3L "APG3 autophagy 3-like (S. cerevisiae)|ATG3 autophagy related 3 homolog (S. cerevisiae)" Autophagy related 1022 2004-07-05 2005-09-11 2012-06-06 2014-11-19 64422 ENSG00000144848 OTTHUMG00000159260 uc003dzd.5 NM_022488 "CCDS2966|CCDS63721" Q9NT62 11825910 MGI:1915091 RGD:708464 ATG3 609606 +HGNC:31123 ATG3P1 autophagy related 3 pseudogene 1 pseudogene pseudogene Approved 20q12 20q12 dJ54G6.1 ATG3P "ATG3 autophagy related 3 homolog (S. cerevisiae) pseudogene|ATG3 autophagy related 3 homolog (S. cerevisiae) pseudogene 1" 2008-01-31 2010-02-24 2012-06-06 2014-11-19 100135756 ENSG00000224357 OTTHUMG00000032467 AY392024 NG_007378 PGOHUM00000247532 +HGNC:16489 ATG4A autophagy related 4A cysteine peptidase protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "AUTL2|APG4A" "AUT-like 2, cysteine endopeptidase (S. cerevisiae)|APG4 autophagy 4 homolog A (S. cerevisiae)|ATG4 autophagy related 4 homolog A (S. cerevisiae)|autophagy related 4A, cysteine peptidase" Autophagy related 1022 2001-12-05 2005-09-11 2016-02-23 2016-02-23 115201 ENSG00000101844 OTTHUMG00000022176 uc004enr.4 AJ320508 NM_052936 "CCDS14538|CCDS14539" Q8WYN0 "12446702|12473658" MGI:2147903 RGD:1596915 ATG4A 300663 C54.002 +HGNC:44081 ATG4AP1 autophagy related 4A cysteine peptidase pseudogene 1 pseudogene pseudogene Approved Xq21.1 Xq21.1 "ATG4A pseudogene 1|autophagy related 4A, cysteine peptidase pseudogene 1" 2012-06-06 2016-02-23 2016-02-23 106480786 ENSG00000232735 OTTHUMG00000021918 NG_044056 PGOHUM00000241877 +HGNC:20790 ATG4B autophagy related 4B cysteine peptidase protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "Apg4B|KIAA0943|DKFZp586D1822|AUTL1" APG4B "APG4 autophagy 4 homolog B (S. cerevisiae)|ATG4 autophagy related 4 homolog B (S. cerevisiae)|autophagy related 4B, cysteine peptidase" Autophagy related 1022 2004-03-23 2005-09-11 2016-02-23 2016-02-23 23192 ENSG00000168397 OTTHUMG00000151514 uc002wbv.4 AB023160 NM_013325 "CCDS46564|CCDS46565" Q9Y4P1 12446702 MGI:1913865 RGD:1309664 ATG4B 611338 C54.003 objectId:2329 +HGNC:16040 ATG4C autophagy related 4C cysteine peptidase protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "FLJ14867|AUTL3" "AUTL1|APG4C" "AUT (S. cerevisiae)-like 1, cysteine endopeptidase; AUT-like 1, cysteine endopeptidase (S. cerevisiae)|APG4 autophagy 4 homolog C (S. cerevisiae)|ATG4 autophagy related 4 homolog C (S. cerevisiae)|autophagy related 4C, cysteine peptidase" Autophagy related 1022 2001-07-13 2005-09-11 2016-02-23 2016-02-23 84938 ENSG00000125703 OTTHUMG00000009142 uc001dat.5 AK027773 NM_032852 CCDS623 Q96DT6 12446702 MGI:2651854 RGD:1598323 ATG4C 611339 C54.004 +HGNC:20789 ATG4D autophagy related 4D cysteine peptidase protein-coding gene gene with protein product Approved 19p13.2 19p13.2 APG4-D "AUTL4|APG4D" "AUT-like 4, cysteine endopeptidase (S. cerevisiae)|APG4 autophagy 4 homolog D (S. cerevisiae)|ATG4 autophagy related 4 homolog D (S. cerevisiae)|autophagy related 4D, cysteine peptidase" Autophagy related 1022 2003-04-11 2005-09-11 2016-02-23 2016-02-23 84971 ENSG00000130734 OTTHUMG00000180582 uc002mov.5 AJ312332 NM_032885 CCDS12241 Q86TL0 12446702 MGI:2444308 RGD:1596392 ATG4D 611340 C54.005 +HGNC:589 ATG5 autophagy related 5 protein-coding gene gene with protein product Approved 6q21 06q21 "ASP|APG5|hAPG5" APG5L "APG5 (autophagy 5, S. cerevisiae)-like|APG5 autophagy 5-like (S. cerevisiae)|ATG5 autophagy related 5 homolog (S. cerevisiae)" Autophagy related 1022 1999-09-16 2005-09-11 2012-06-06 2014-11-19 9474 ENSG00000057663 OTTHUMG00000016193 uc003prf.4 Y11588 NM_004849 "CCDS5055|CCDS69159|CCDS75498" Q9H1Y0 "9563500|11349150|15778222" MGI:1277186 RGD:1359580 ATG5 604261 +HGNC:16935 ATG7 autophagy related 7 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "GSA7|DKFZp434N0735" ubiquitin-activating enzyme E1-like protein APG7L "APG7 autophagy 7-like (S. cerevisiae)|ATG7 autophagy related 7 homolog (S. cerevisiae)" "Ubiquitin like modifier activating enzymes|Autophagy related" "100|1022" 2003-11-20 2005-09-11 2012-06-06 2016-10-05 10533 ENSG00000197548 OTTHUMG00000129740 uc003bwc.4 AF094516 NM_006395 "CCDS2605|CCDS46752|CCDS46753" O95352 10233149 MGI:1921494 RGD:1304817 ATG7 608760 +HGNC:22408 ATG9A autophagy related 9A protein-coding gene gene with protein product Approved 2q35 02q35 FLJ22169 APG9L1 "APG9 autophagy 9-like 1 (S. cerevisiae)|ATG9 autophagy related 9 homolog A (S. cerevisiae)" Autophagy related 1022 2004-11-24 2005-09-11 2012-06-06 2015-09-11 79065 ENSG00000198925 OTTHUMG00000154557 uc002vkf.3 AK021732 NM_024085 CCDS42820 Q7Z3C6 MGI:2138446 RGD:1310450 ATG9A 612204 +HGNC:21899 ATG9B autophagy related 9B protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "FLJ14885|APG9L2|SONE" NOS3AS "nitric oxide synthase 3 antisense|ATG9 autophagy related 9 homolog B (S. cerevisiae)" Autophagy related 1022 2004-11-24 2005-09-11 2012-06-06 2016-10-05 285973 ENSG00000181652 OTTHUMG00000158634 uc064jfp.1 AK027791 NM_173681 CCDS83242 Q674R7 "15234981|15755735" MGI:2685420 RGD:1560887 ATG9B 612205 +HGNC:20315 ATG10 autophagy related 10 protein-coding gene gene with protein product Approved 5q14.1-q14.2 05q14.1-q14.2 "DKFZP586I0418|FLJ13954" APG10L "APG10 autophagy 10-like (S. cerevisiae)|ATG10 autophagy related 10 homolog (S. cerevisiae)" Autophagy related 1022 2003-01-28 2005-09-11 2012-06-06 2016-10-11 83734 ENSG00000152348 OTTHUMG00000119041 uc003khr.5 AK024016 NM_001131028 CCDS4057 Q9H0Y0 MGI:1914045 RGD:1587624 ATG10 610800 +HGNC:40914 ATG10-AS1 ATG10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q14.1 05q14.1 ATG10 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100874022 ENSG00000248192 OTTHUMG00000162770 uc063faq.1 +HGNC:41455 ATG10-IT1 ATG10 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 5q14.1 05q14.1 ATG10 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874311 ENSG00000236447 OTTHUMG00000162771 uc063fap.1 +HGNC:588 ATG12 autophagy related 12 protein-coding gene gene with protein product Approved 5q22.3 05q22.3 APG12 APG12 autophagy 12-like APG12L "Apg12 (autophagy 12, S. cerevisiae)-like|APG12 autophagy 12-like (S. cerevisiae)|ATG12 autophagy related 12 homolog (S. cerevisiae)" Autophagy related 1022 1999-10-01 2005-09-11 2012-06-06 2016-10-05 9140 ENSG00000145782 OTTHUMG00000128889 uc003krh.4 AB017507 NM_004707 "CCDS4122|CCDS64222" O94817 9852036 MGI:1914776 RGD:1306306 ATG12 609608 +HGNC:21466 ATG12P1 autophagy related 12 pseudogene 1 pseudogene pseudogene Approved 17q25.1 17q25.1 ATG12P "ATG12 autophagy related 12 homolog (S. cerevisiae) pseudogene|ATG12 autophagy related 12 homolog (S. cerevisiae) pseudogene 1" 2008-01-31 2010-06-29 2012-06-06 2014-11-19 100151642 NG_007656 PGOHUM00000237173 +HGNC:38605 ATG12P2 autophagy related 12 pseudogene 2 pseudogene pseudogene Approved 2q36.1 02q36.1 ATG12 autophagy related 12 homolog (S. cerevisiae) pseudogene 2 2010-06-29 2012-06-06 2014-11-19 100293948 ENSG00000224121 OTTHUMG00000153389 NG_016651 PGOHUM00000250451 +HGNC:29091 ATG13 autophagy related 13 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 KIAA0652 "KIAA0652|ATG13 autophagy related 13 homolog (S. cerevisiae)" Autophagy related 1022 2005-10-28 2010-06-29 2012-06-06 2014-11-19 9776 ENSG00000175224 OTTHUMG00000166538 uc001ncz.4 AB014552 NM_014741 "CCDS7921|CCDS44582|CCDS55760|CCDS55761" O75143 "15169610|18339812|17204848" MGI:1196429 RGD:1310685 ATG13 615088 +HGNC:19962 ATG14 autophagy related 14 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 ATG14L "Barkor|beclin 1-associated autophagy-related key regulator" KIAA0831 "KIAA0831|ATG14 autophagy related 14 homolog (S. cerevisiae)" Autophagy related 1022 2003-11-21 2010-06-29 2012-06-06 2016-10-05 22863 ENSG00000126775 OTTHUMG00000172129 uc001xbx.3 AB020638 NM_014924 CCDS32087 Q6ZNE5 18843052 MGI:1261775 RGD:1304610 ATG14 613515 +HGNC:21498 ATG16L1 autophagy related 16 like 1 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "WDR30|FLJ10035|ATG16A" "APG16L|ATG16L" "APG16 autophagy 16-like (S. cerevisiae)|ATG16 autophagy related 16-like (S. cerevisiae)|ATG16 autophagy related 16-like 1 (S. cerevisiae)" "WD repeat domain containing|Autophagy related" "362|1022" 2003-12-22 2005-09-13 2015-11-24 2015-11-24 55054 ENSG00000085978 OTTHUMG00000133619 uc002vty.3 AK000897 NM_017974 "CCDS2502|CCDS2503|CCDS54438" Q676U5 MGI:1924290 RGD:1310631 ATG16L1 610767 235213 +HGNC:25464 ATG16L2 autophagy related 16 like 2 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "FLJ00012|WDR80|ATG16B" "ATG16 autophagy related 16-like 2 (S. cerevisiae)|autophagy related 16-like 2 (S. cerevisiae)" "WD repeat domain containing|Autophagy related" "362|1022" 2005-09-13 2015-11-24 2015-11-24 89849 ENSG00000168010 OTTHUMG00000167961 uc001otd.4 AK024423 NM_033388 CCDS31634 Q8NAA4 11214971 MGI:1920933 RGD:1311400 ATG16L2 +HGNC:25679 ATG101 autophagy related 101 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 FLJ11773 C12orf44 chromosome 12 open reading frame 44 Autophagy related 1022 2006-01-23 2014-02-12 2014-02-12 2014-11-19 60673 ENSG00000123395 OTTHUMG00000169611 AF218031 NM_021934 CCDS8820 Q9BSB4 "19287211|19597335" MGI:1915368 RGD:1359310 615089 +HGNC:793 ATHS atherosclerosis susceptibility (lipoprotein associated) phenotype phenotype only Approved 19p13.3-p13.2 19p13.3-p13.2 ALP 1991-11-14 2008-05-14 470 1731344 108725 +HGNC:794 ATIC 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding gene gene with protein product Approved 2q35 02q35 "PURH|AICARFT|IMPCHASE" phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1997-05-15 2014-11-19 471 ENSG00000138363 OTTHUMG00000133023 uc002vex.5 NM_004044 CCDS2398 P31939 "8567683|9378707" MGI:1351352 RGD:70879 ATIC 601731 260894 "2.1.2.3|3.5.4.10" +HGNC:11231 ATL1 atlastin GTPase 1 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "FSP1|AD-FSP" atlastin "SPG3|SPG3A" spastic paraplegia 3A (autosomal dominant) 1993-10-28 2008-09-17 2008-09-17 2016-10-12 51062 ENSG00000198513 OTTHUMG00000140297 uc059bjs.1 AF131801 NM_015915 "CCDS9700|CCDS32077" Q8WXF7 "8252041|7825576" MGI:1921241 RGD:1359232 LRG_360|http://www.lrg-sequence.org/LRG/LRG_360 ATL1 606439 119821 +HGNC:24047 ATL2 atlastin GTPase 2 protein-coding gene gene with protein product Approved 2p22.2-p22.1 02p22.2-p22.1 ARL6IP2 ADP-ribosylation factor-like 6 interacting protein 2 2004-01-21 2008-09-17 2008-09-17 2016-10-11 64225 ENSG00000119787 OTTHUMG00000102074 uc002rqq.4 NM_022374 "CCDS1795|CCDS46260|CCDS77402|CCDS82436" Q8NHH9 "10508919|18270207" MGI:1929492 RGD:1305125 ATL2 609368 +HGNC:24526 ATL3 atlastin GTPase 3 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 DKFZP564J0863 2008-09-17 2014-11-19 25923 ENSG00000184743 OTTHUMG00000167854 uc001nxk.2 NM_015459 "CCDS41663|CCDS73309" Q6DD88 18270207 MGI:1924270 RGD:1309871 ATL3 609369 392307 +HGNC:795 ATM ATM serine/threonine kinase protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "TEL1|TELO1" TEL1, telomere maintenance 1, homolog (S. cerevisiae) "ATA|ATDC|ATC|ATD" "ataxia telangiectasia mutated (includes complementation groups A, C and D)|ataxia telangiectasia mutated" 1995-07-07 2014-06-17 2016-10-12 472 ENSG00000149311 OTTHUMG00000166480 uc001pkb.1 AB209133 NM_000051 CCDS31669 Q13315 MGI:107202 RGD:1593265 "Ataxia Telangiectasia Mutated (ATM)|http://www.LOVD.nl/ATM|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=ATM|LRG_135|http://www.lrg-sequence.org/LRG/LRG_135" ATM 607585 121474 objectId:1934 +HGNC:29034 ATMIN ATM interactor protein-coding gene gene with protein product Approved 16q23.2 16q23.2 "ASCIZ|KIAA0431|ZNF822" "ATM/ATR-Substrate Chk2-Interacting Zn++-finger protein|ATM INteracting protein" Zinc fingers C2H2-type 28 2007-12-06 2014-11-19 23300 ENSG00000166454 OTTHUMG00000176469 uc002ffz.2 BC002701 NM_015251 "CCDS32494|CCDS73917" O43313 "15933716|17525732|19001856" MGI:2682328 RGD:1305781 ATMIN 614693 +HGNC:3033 ATN1 atrophin 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 B37 "D12S755E|DRPLA" dentatorubral-pallidoluysian atrophy (atrophin-1) 1994-04-07 2005-03-17 2005-03-15 2016-01-15 1822 ENSG00000111676 OTTHUMG00000169015 uc001qrw.2 U23851 NM_001940 CCDS31734 P54259 8136826 MGI:104725 RGD:61832 ATN1 607462 121482 +HGNC:797 ATOH1 atonal bHLH transcription factor 1 protein-coding gene gene with protein product Approved 4q22.2 04q22.2 "HATH1|MATH-1|Math1|bHLHa14" "atonal homolog 1 (Drosophila)|atonal homolog bHLH transcription factor 1" Basic helix-loop-helix proteins 420 1997-02-27 2015-06-19 2016-10-05 474 ENSG00000172238 OTTHUMG00000130972 uc003hta.2 U61148 NM_005172 CCDS3638 Q92858 8872459 MGI:104654 RGD:1565171 ATOH1 601461 +HGNC:13907 ATOH7 atonal bHLH transcription factor 7 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "Math5|bHLHa13" "atonal homolog 7 (Drosophila)|atonal homolog bHLH transcription factor 7" Basic helix-loop-helix proteins 420 2002-07-05 2015-06-19 2016-10-05 220202 ENSG00000179774 OTTHUMG00000018346 uc001jnq.4 AF418922 NM_145178 CCDS7276 Q8N100 11889557 MGI:1355553 RGD:1304957 ATOH7 609875 298500 +HGNC:24126 ATOH8 atonal bHLH transcription factor 8 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "HATH6|FLJ14708|bHLHa21" basic helix loop helix transcription factor 6 "atonal homolog 8 (Drosophila)|atonal homolog bHLH transcription factor 8" Basic helix-loop-helix proteins 420 2004-02-11 2015-06-19 2015-06-19 84913 ENSG00000168874 OTTHUMG00000130178 uc002sqn.4 AK074681 NM_032827 CCDS1985 Q96SQ7 12419857 MGI:1918343 RGD:1561512 ATOH8 +HGNC:798 ATOX1 antioxidant 1 copper chaperone protein-coding gene gene with protein product Approved 5q33.1 05q33.1 HAH1 "ATX1 (antioxidant protein 1, yeast) homolog 1|ATX1 antioxidant protein 1 homolog (yeast)" 1997-07-22 2013-05-01 2016-01-14 475 ENSG00000177556 OTTHUMG00000163499 uc003luk.4 U70660 NM_004045 CCDS47317 O00244 9083055 MGI:1333855 RGD:621684 ATOX1 602270 +HGNC:799 ATP1A1 ATPase Na+/K+ transporting subunit alpha 1 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 "sodium/potassium-transporting ATPase subunit alpha-1|sodium pump subunit alpha-1|sodium-potassium ATPase catalytic subunit alpha-1" ATPase, Na+/K+ transporting, alpha 1 polypeptide ATPase Na+/K+ transporting subunits 1208 1988-05-11 2016-02-10 2016-10-05 476 ENSG00000163399 OTTHUMG00000012109 uc001ege.5 D00099 NM_001160233 "CCDS887|CCDS53351|CCDS53352" P05023 MGI:88105 RGD:2167 ATP1A1 182310 366774 objectId:833 3.6.3.9 +HGNC:28262 ATP1A1-AS1 ATP1A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p13.1 01p13.1 MGC16179 "C1orf203|ATP1A1OS" "chromosome 1 open reading frame 203|ATP1A1 opposite strand" 2005-11-17 2014-03-31 2014-03-31 2014-11-19 84852 ENSG00000203865 OTTHUMG00000012111 BC007373 NR_024124 Q5TC04 12477932 +HGNC:800 ATP1A2 ATPase Na+/K+ transporting subunit alpha 2 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 FHM2 "sodium/potassium-transporting ATPase subunit alpha-2|sodium pump subunit alpha-2|sodium-potassium ATPase catalytic subunit alpha-2" MHP2 "migraine, hemiplegic 2|ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide|ATPase, Na+/K+ transporting, alpha 2 polypeptide" ATPase Na+/K+ transporting subunits 1208 1988-05-11 2016-02-10 2016-10-12 477 ENSG00000018625 OTTHUMG00000024080 uc001fvc.4 AB018321 NM_000702 CCDS1196 P50993 9403481 MGI:88106 RGD:2168 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=ATP1A2|Familial Hemiplegic Migraine (FHM) Variation Database|http://grenada.lumc.nl/LOVD2/FHM/home.php?select_db=ATP1A2|LRG_6|http://www.lrg-sequence.org/LRG/LRG_6" ATP1A2 182340 121497 objectId:834 3.6.3.9 +HGNC:801 ATP1A3 ATPase Na+/K+ transporting subunit alpha 3 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "sodium/potassium-transporting ATPase subunit alpha-3|sodium pump subunit alpha-3|sodium-potassium ATPase catalytic subunit alpha-3" DYT12 "dystonia 12|ATPase, Na+/K+ transporting, alpha 3 polypeptide" ATPase Na+/K+ transporting subunits 1208 1986-01-01 2016-02-10 2016-02-10 478 ENSG00000105409 OTTHUMG00000137384 uc010xwh.4 NM_152296 "CCDS12594|CCDS58663|CCDS58664" P13637 17282997 MGI:88107 RGD:2169 ATP1A3 182350 121501 objectId:835 3.6.3.9 +HGNC:14073 ATP1A4 ATPase Na+/K+ transporting subunit alpha 4 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "sodium/potassium-transporting ATPase subunit alpha-4|sodium pump subunit alpha-4|sodium-potassium ATPase catalytic subunit alpha-4" ATP1AL2 "ATPase, Na+/K+ transporting, alpha polypeptide-like 2|ATPase, Na+/K+ transporting, alpha 4 polypeptide" ATPase Na+/K+ transporting subunits 1208 2000-11-28 2016-02-10 2016-02-10 480 ENSG00000132681 OTTHUMG00000031609 uc001fve.5 BC028297 NM_144699 "CCDS1197|CCDS44255" Q13733 "1981991|3035563" MGI:1351335 RGD:61952 ATP1A4 607321 objectId:836 +HGNC:804 ATP1B1 ATPase Na+/K+ transporting subunit beta 1 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "sodium/potassium-transporting ATPase subunit beta-1|sodium pump subunit beta-1|sodium-potassium ATPase subunit beta 1 (non-catalytic)" ATP1B ATPase, Na+/K+ transporting, beta 1 polypeptide ATPase Na+/K+ transporting subunits 1208 1986-01-01 2016-02-10 2016-02-10 481 ENSG00000143153 OTTHUMG00000034590 uc001gfr.2 U16799 NM_001677 CCDS1276 P05026 MGI:88108 RGD:2170 ATP1B1 182330 objectId:837 +HGNC:809 ATP1B1P1 ATPase Na+/K+ transporting subunit beta 1 pseudogene 1 pseudogene pseudogene Approved 4p13 04p13 ATP1BL1 "ATPase, Na+/K+ transporting, beta polypeptide-like 1|ATPase, Na+/K+ transporting, beta 1 polypeptide pseudogene 1" 1988-08-12 2010-03-24 2016-02-10 2016-02-10 485 ENSG00000249212 OTTHUMG00000160530 M25159 NG_001081 "2559024|2842249" PGOHUM00000245890 +HGNC:805 ATP1B2 ATPase Na+/K+ transporting subunit beta 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 AMOG "sodium/potassium-transporting ATPase subunit beta-2|sodium pump subunit beta-2|sodium-potassium ATPase subunit beta 2 (non-catalytic)" ATPase, Na+/K+ transporting, beta 2 polypeptide ATPase Na+/K+ transporting subunits 1208 1990-05-28 2016-02-10 2016-02-10 482 ENSG00000129244 OTTHUMG00000178018 uc002gif.2 U45945 NM_001678 CCDS32550 P14415 1699290 MGI:88109 RGD:2171 ATP1B2 182331 objectId:838 3.6.3.9 +HGNC:806 ATP1B3 ATPase Na+/K+ transporting subunit beta 3 protein-coding gene gene with protein product Approved 3q23 03q23 "FLJ29027|CD298" "sodium/potassium-transporting ATPase subunit beta-3|sodium pump subunit beta-3|sodium-potassium ATPase subunit beta 3 (non-catalytic)" ATPase, Na+/K+ transporting, beta 3 polypeptide "CD molecules|ATPase Na+/K+ transporting subunits" "471|1208" 1997-06-18 2016-02-10 2016-02-10 483 ENSG00000069849 OTTHUMG00000159081 uc003eug.2 BC011835 NM_001679 CCDS3121 P54709 "8798450|9457675" MGI:107788 RGD:2172 ATP1B3 601867 objectId:839 CD298 +HGNC:40088 ATP1B3-AS1 ATP1B3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q23 03q23 ATP1B3 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874077 ENSG00000244124 OTTHUMG00000159102 uc062omw.1 +HGNC:807 ATP1B3P1 ATPase Na+/K+ transporting subunit beta 3 pseudogene 1 pseudogene pseudogene Approved 2p16.1 02p16.1 ATPase, Na+/K+ transporting, beta 3 pseudogene 1997-07-25 2016-02-10 2016-08-01 484 ENSG00000271707 OTTHUMG00000184452 AF005898 NG_000849 9457675 PGOHUM00000297875 +HGNC:808 ATP1B4 ATPase Na+/K+ transporting family member beta 4 protein-coding gene gene with protein product Approved Xq24 Xq24 "Na,K-ATPase beta m-subunit|BetaM" "ATPase, (Na+)/K+ transporting, beta 4 polypeptide|ATPase, Na+/K+ transporting, beta 4 polypeptide" 2000-08-22 2016-02-10 2016-02-10 23439 ENSG00000101892 OTTHUMG00000022299 uc004esq.4 AF158383 NM_001142447 "CCDS14598|CCDS48158" Q9UN42 "10456317|17592128|21855530" MGI:1915071 RGD:620994 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ATP1B4 ATP1B4 +HGNC:811 ATP2A1 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 SERCA1 "sarcoplasmic/endoplasmic reticulum calcium ATPase 1|calcium pump 1" ATP2A ATPase, Ca++ transporting, cardiac muscle, fast twitch 1 ATPases Ca2+ transporting 1209 1990-09-10 2016-02-10 2016-10-05 487 ENSG00000196296 OTTHUMG00000131760 uc002drn.1 NM_004320 "CCDS10643|CCDS42139|CCDS66997" O14983 MGI:105058 RGD:621293 ATP2A1 108730 118840 objectId:840 3.6.3.8 +HGNC:51370 ATP2A1-AS1 ATP2A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p11.2 16p11.2 2014-10-16 2014-10-16 100289092 ENSG00000260442 OTTHUMG00000176592 "BX099641|AI015924" NR_046287 +HGNC:812 ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 SERCA2 "sarcoplasmic/endoplasmic reticulum calcium ATPase 2|calcium pump 2" "ATP2B|DAR" ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 ATPases Ca2+ transporting 1209 1990-09-10 2016-02-10 2016-02-10 488 ENSG00000174437 OTTHUMG00000169327 uc001tqk.5 NM_001681 "CCDS9143|CCDS9144" P16615 10080178 MGI:88110 RGD:2174 ATP2A2 108740 118844 objectId:841 3.6.3.8 +HGNC:813 ATP2A3 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 SERCA3 "sarcoplasmic/endoplasmic reticulum calcium ATPase 3|calcium pump 3" ATPase, Ca++ transporting, ubiquitous ATPases Ca2+ transporting 1209 1992-07-20 2016-02-10 2016-10-05 489 ENSG00000074370 OTTHUMG00000177674 uc002fxc.3 NM_174953 "CCDS11041|CCDS11042|CCDS42234|CCDS45579|CCDS45580" Q93084 8809064 MGI:1194503 RGD:2175 ATP2A3 601929 objectId:842 3.6.3.8 +HGNC:814 ATP2B1 ATPase plasma membrane Ca2+ transporting 1 protein-coding gene gene with protein product Approved 12q21.33 12q21.33 PMCA1 plasma membrane calcium-transporting ATPase 1 ATPase, Ca++ transporting, plasma membrane 1 ATPases Ca2+ transporting 1209 1990-10-05 2016-02-10 2016-02-10 490 ENSG00000070961 OTTHUMG00000169946 uc058rpj.1 J04027 NM_001682 "CCDS9035|CCDS41817" P20020 1674727 MGI:104653 RGD:621303 ATP2B1 108731 objectId:843 3.6.3.8 +HGNC:815 ATP2B2 ATPase plasma membrane Ca2+ transporting 2 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 PMCA2 "plasma membrane Ca2+ pump 2|plasma membrane calcium-transporting ATPase 2" ATPase, Ca++ transporting, plasma membrane 2 ATPases Ca2+ transporting 1209 1992-06-26 2016-02-10 2016-02-10 491 ENSG00000157087 OTTHUMG00000128679 uc003bvw.3 X63575 NM_001683 "CCDS2601|CCDS33701|CCDS82733" Q01814 1313367 MGI:105368 RGD:2176 ATP2B2 108733 447183 objectId:844 3.6.3.8 +HGNC:41309 ATP2B2-IT1 ATP2B2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 ATP2B2 intronic transcript 1 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 100874324 ENSG00000236999 OTTHUMG00000140094 uc062gsp.1 +HGNC:41310 ATP2B2-IT2 ATP2B2 intronic transcript 2 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 ATP2B2 intronic transcript 2 (non-protein coding) 2011-06-08 2015-02-25 2015-02-25 100874325 ENSG00000224771 OTTHUMG00000140095 uc062gsq.1 NR_046766 +HGNC:816 ATP2B3 ATPase plasma membrane Ca2+ transporting 3 protein-coding gene gene with protein product Approved Xq28 Xq28 "PMCA3|CFAP39" "plasma membrane calcium-transporting ATPase 3|cilia and flagella associated protein 39" "SCAX1|CLA2" "spinocerebellar ataxia, X-linked 1|cerebellar ataxia 2 (X-linked)|ATPase, Ca++ transporting, plasma membrane 3" ATPases Ca2+ transporting 1209 1992-07-10 2016-02-10 2016-02-10 492 ENSG00000067842 OTTHUMG00000024202 uc065btp.1 U60414 NM_021949 "CCDS14722|CCDS35440" Q16720 "8187550|22912398" MGI:1347353 RGD:621304 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ATP2B3 ATP2B3 300014 311398 objectId:845 3.6.3.8 +HGNC:817 ATP2B4 ATPase plasma membrane Ca2+ transporting 4 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 PMCA4 plasma membrane calcium-transporting ATPase 4 "ATP2B2|MXRA1" "matrix-remodelling associated 1|ATPase, Ca++ transporting, plasma membrane 4" ATPases Ca2+ transporting 1209 1990-10-05 2016-02-10 2016-02-10 493 ENSG00000058668 OTTHUMG00000035906 uc001gzw.4 M25874 NM_001001396 "CCDS1440|CCDS30977" P23634 1674727 MGI:88111 RGD:621305 ATP2B4 108732 objectId:846 3.6.3.8 +HGNC:13211 ATP2C1 ATPase secretory pathway Ca2+ transporting 1 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "KIAA1347|ATP2C1A|PMR1|SPCA1" "secretory pathway Ca2+/Mn2+ ATPase 1|calcium-transporting ATPase type 2C member 1" BCPM "benign chronic pemphigus (Hailey-Hailey disease)|ATPase, Ca++ transporting, type 2C, member 1" ATPases Ca2+ transporting 1209 2000-09-19 2016-02-10 2016-10-05 27032 ENSG00000017260 OTTHUMG00000136802 uc003ens.4 AF181120 NM_001001486 "CCDS33856|CCDS46912|CCDS46913|CCDS46914|CCDS56278|CCDS56279|CCDS56280|CCDS56281|CCDS75006" P98194 "10615129|10767338" MGI:1889008 RGD:621311 ATP2C1 604384 118849 objectId:847 3.6.3.8 +HGNC:29103 ATP2C2 ATPase secretory pathway Ca2+ transporting 2 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 "KIAA0703|SPCA2" secretory pathway calcium ATPase 2 ATPase, Ca++ transporting, type 2C, member 2 ATPases Ca2+ transporting 1209 2006-10-20 2016-02-10 2016-02-10 9914 ENSG00000064270 OTTHUMG00000176737 uc002fhx.4 AK091051 NM_014861 "CCDS42207|CCDS67088" O75185 9734811 MGI:1916297 RGD:620647 ATP2C2 613082 objectId:848 3.6.3.8 +HGNC:818 ATP3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-10-18 +HGNC:819 ATP4A ATPase H+/K+ transporting alpha subunit protein-coding gene gene with protein product Approved 19q13.12 19q13.12 ATP6A "gastric H,K-ATPase alpha subunit|H(+)-K(+)-ATPase alpha subunit|proton pump" ATPase, H+/K+ exchanging, alpha polypeptide ATPase H+/K+ transporting 1211 1990-09-10 2016-02-10 2016-10-05 495 ENSG00000105675 OTTHUMG00000048106 uc002oal.2 NM_000704 CCDS12467 P20648 1330887 MGI:88113 RGD:2177 ATP4A 137216 objectId:849 3.6.3.10 +HGNC:820 ATP4B ATPase H+/K+ transporting beta subunit protein-coding gene gene with protein product Approved 13q34 13q34 ATP6B ATPase, H+/K+ exchanging, beta polypeptide ATPase H+/K+ transporting 1211 1992-11-26 2016-02-10 2016-02-10 496 ENSG00000186009 OTTHUMG00000140234 uc001vtz.5 NM_000705 CCDS9539 P51164 "1330887|15057823" MGI:88114 RGD:2178 ATP4B 137217 objectId:851 3.6.3.10 +HGNC:823 ATP5A1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "ATP5A|hATP1|OMR|ORM" "ATP5AL2|ATPM" "ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 2, non-cardiac muscle-like 2|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2006-01-13 2016-10-05 498 ENSG00000152234 OTTHUMG00000132637 uc002lbt.1 D14710 NM_004046 "CCDS11927|CCDS58620|CCDS59315" P25705 1830491 MGI:88115 RGD:619993 ATP5A1 164360 353576 objectId:796 3.6.1.14 +HGNC:827 ATP5A1P1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 1 pseudogene pseudogene Approved 9p11.1 09p11.1 ATP5AP1 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, pseudogene 1 1997-05-22 2009-12-17 2010-01-04 2016-10-05 642545 OTTHUMG00000066804 9284928 PGOHUM00000236480 +HGNC:828 ATP5A1P2 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 2 pseudogene pseudogene Approved 2q24.1 02q24.1 ATP5AP2 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, pseudogene 2 1997-05-22 2009-12-17 2010-01-04 2010-01-04 504 ENSG00000227682 OTTHUMG00000153811 NG_008671 9284928 +HGNC:829 ATP5A1P3 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 3 pseudogene pseudogene Approved 16q22.2 16q22.2 ATP5AP3 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, pseudogene 3 1997-05-22 2009-12-17 2010-01-04 2015-02-03 645443 ENSG00000263232 OTTHUMG00000178102 NG_008672 9284928 PGOHUM00000293654 +HGNC:23563 ATP5A1P4 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 4 pseudogene pseudogene Approved 14q23.2 14q23.2 ATP5AP4 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, pseudogene 4 2004-11-25 2009-12-17 2010-01-04 2015-02-03 100129782 ENSG00000258877 OTTHUMG00000171112 NG_022842 PGOHUM00000292375 +HGNC:825 ATP5A1P5 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 5 pseudogene pseudogene Approved 9p11.1 09p11.1 "ATP5AL1|ATP5A1P6" "ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 1, cardiac muscle-like 1|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle-like 1|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle-like 1 pseudogene|ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 6" 1994-11-15 2009-12-17 2010-01-04 2015-07-30 442416 ENSG00000234861 OTTHUMG00000013187 NG_016580 PGOHUM00000303835 +HGNC:37665 ATP5A1P7 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 7 pseudogene pseudogene Approved 9q13 09q13 ATP5A1P9 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 9 2009-12-17 2010-01-04 2015-02-05 442415 ENSG00000241571 OTTHUMG00000013191 NG_028724 PGOHUM00000304248 +HGNC:37666 ATP5A1P8 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 8 pseudogene pseudogene Approved 9p12 09p12 2009-12-17 2010-01-04 2015-02-03 392322 ENSG00000234720 OTTHUMG00000013211 NG_027840 PGOHUM00000303806 +HGNC:37668 ATP5A1P10 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 pseudogene 10 pseudogene pseudogene Approved 9q21.11 09q21.11 2009-12-17 2010-01-04 2015-07-30 100132619 ENSG00000277297 OTTHUMG00000188568 NG_028188 PGOHUM00000304300 +HGNC:830 ATP5B ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide protein-coding gene gene with protein product Approved 12q13.3 12q13.3 ATPSB "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1989-06-30 2016-10-05 506 ENSG00000110955 OTTHUMG00000170291 uc001slr.4 M27132 NM_001686 CCDS8924 P06576 2687158 MGI:107801 RGD:621368 ATP5B 102910 objectId:797 3.6.3.14 +HGNC:832 ATP5BL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-02 +HGNC:831 ATP5BP1 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide pseudogene 1 pseudogene pseudogene Approved 2q11.2 02q11.2 ATPMBL1 "ATPSBL1|ATP5BL1" ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide-like 1 1989-06-30 2010-03-24 2010-03-24 2014-11-19 507 ENSG00000231635 OTTHUMG00000153103 NG_021261 7798271 PGOHUM00000240812 +HGNC:833 ATP5C1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 protein-coding gene gene with protein product Approved 10p14 10p14 "ATP5CL1|ATP5C" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2014-11-18 509 ENSG00000165629 OTTHUMG00000017639 uc001ijv.4 D16561 NM_005174 "CCDS7081|CCDS31142" P36542 "8168843|8227057" MGI:1261437 RGD:620011 ATP5C1 108729 objectId:798 +HGNC:834 ATP5C1P1 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene 1 pseudogene pseudogene Approved 14q22.2 14q22.2 "ATP5CL2|ATP5C2" ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 2 1993-09-20 2010-03-25 2010-03-25 2014-11-19 645560 ENSG00000224004 OTTHUMG00000029710 NG_004656 8168843 PGOHUM00000247803 +HGNC:837 ATP5D ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2014-11-19 513 ENSG00000099624 OTTHUMG00000180143 uc002lrn.4 X63423 NM_001687 CCDS12058 P30049 1531933 MGI:1913293 RGD:621372 ATP5D 603150 objectId:799 +HGNC:838 ATP5E ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit protein-coding gene gene with protein product Approved 20q13.32 20q13.32 "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2016-10-05 514 ENSG00000124172 OTTHUMG00000032854 uc002yal.4 AF077045 NM_001001977 CCDS13476 P56381 10727396 MGI:1855697 RGD:621374 ATP5E 606153 267365 objectId:800 +HGNC:839 ATP5EP1 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 1 pseudogene pseudogene Approved 4q24 04q24 1999-09-07 2016-09-28 23744 ENSG00000250922 OTTHUMG00000161055 AF277095 NG_002691 10727396 +HGNC:34026 ATP5EP2 ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit pseudogene 2 other unknown Approved 13q12.2 13q12.2 2008-03-17 2016-10-05 432369 ENSG00000180389 OTTHUMG00000016642 uc001uru.4 EC567419 NR_002162 Q5VTU8 ATP5EP2 +HGNC:840 ATP5F1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2015-11-12 2015-11-12 515 ENSG00000116459 OTTHUMG00000011745 uc001ebc.4 X60221 NM_001688 CCDS836 P24539 1831354 MGI:1100495 RGD:620041 ATP5F1 603270 objectId:802 +HGNC:39742 ATP5F1P1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 1 pseudogene pseudogene Approved 13q14.3 13q14.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 1 2011-03-24 2015-11-12 2015-11-12 100422523 ENSG00000224451 OTTHUMG00000016948 NG_024928 PGOHUM00000248596 +HGNC:39743 ATP5F1P2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 2 pseudogene pseudogene Approved 7q21.3 07q21.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 2 2011-03-24 2015-11-12 2015-11-12 645973 ENSG00000214342 OTTHUMG00000155560 NG_009430 PGOHUM00000233473 +HGNC:39744 ATP5F1P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 3 pseudogene pseudogene Approved 7q36.1 07q36.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 3 2011-03-24 2015-11-12 2015-11-12 644333 ENSG00000214003 OTTHUMG00000151466 NG_022578 PGOHUM00000233654 +HGNC:39745 ATP5F1P4 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 4 pseudogene pseudogene Approved 2q23.3 02q23.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 4 2011-03-24 2015-11-12 2015-11-12 100422514 ENSG00000214025 OTTHUMG00000153824 NG_023742 PGOHUM00000240988 +HGNC:39746 ATP5F1P5 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 5 pseudogene pseudogene Approved 11q24.1 11q24.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 5 2011-03-24 2015-11-12 2015-11-12 100128516 ENSG00000254944 OTTHUMG00000166028 NG_021837 PGOHUM00000242912 +HGNC:39747 ATP5F1P6 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 6 pseudogene pseudogene Approved 6q24.1 06q24.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 6 2011-03-24 2015-11-12 2015-11-12 645440 ENSG00000219806 OTTHUMG00000015695 NG_022330 PGOHUM00000243398 +HGNC:39748 ATP5F1P7 ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1 pseudogene 7 pseudogene pseudogene Approved 16q23.1 16q23.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 pseudogene 7 2011-03-24 2015-11-12 2015-11-12 124496 ENSG00000261424 OTTHUMG00000177137 NG_022506 PGOHUM00000248937 +HGNC:841 ATP5G1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) protein-coding gene gene with protein product Approved 17q21.32 17q21.32 ATP5G "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9)" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2015-11-12 2015-11-12 516 ENSG00000159199 OTTHUMG00000160520 uc002ioh.4 D13118 NM_005175 CCDS11539 P05496 8328972 MGI:107653 RGD:61933 ATP5G1 603192 objectId:803 +HGNC:19815 ATP5G1P1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 1 pseudogene pseudogene Approved 14q32.33 14q32.33 ATP5GP3 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) pseudogene 3|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) pseudogene 1|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 1" 2003-01-13 2009-12-18 2015-11-12 2015-11-12 319136 ENSG00000230157 OTTHUMG00000152474 NG_002514 PGOHUM00000247902 +HGNC:19817 ATP5G1P2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 2 pseudogene pseudogene Approved 14q12 14q12 ATP5GP4 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) pseudogene 4|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) pseudogene 2|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 2" 2003-01-13 2009-12-18 2015-11-12 2015-11-12 319137 NG_002515 PGOHUM00000247757 +HGNC:39506 ATP5G1P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 3 pseudogene pseudogene Approved 3q22.3 03q22.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 3 2011-02-01 2015-11-12 2015-11-12 646619 ENSG00000242244 OTTHUMG00000159895 NG_022220 PGOHUM00000237788 +HGNC:39507 ATP5G1P4 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 4 pseudogene pseudogene Approved 3q26.31 03q26.31 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 4 2011-02-01 2015-11-12 2015-11-12 100287755 ENSG00000227440 OTTHUMG00000156866 NG_028935 PGOHUM00000237864 +HGNC:39508 ATP5G1P5 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 5 pseudogene pseudogene Approved 13q33.3 13q33.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 5 2011-02-01 2015-11-12 2015-11-12 390424 ENSG00000227590 OTTHUMG00000017322 NG_023226 ATP5G1P5 PGOHUM00000248682 +HGNC:39509 ATP5G1P6 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 6 pseudogene pseudogene Approved 18q21.33 18q21.33 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 6 2011-02-01 2015-11-12 2015-11-12 100505704 ENSG00000214318 OTTHUMG00000141308 NG_028974 PGOHUM00000235086 +HGNC:39510 ATP5G1P7 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 7 pseudogene pseudogene Approved 10q22.1 10q22.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 7 2011-02-01 2015-11-12 2015-11-12 100130962 ENSG00000232734 OTTHUMG00000018379 NG_028965 PGOHUM00000238516 +HGNC:39511 ATP5G1P8 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C1 (subunit 9) pseudogene 8 pseudogene pseudogene Approved 10q22.3 10q22.3 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C1 (subunit 9) pseudogene 8 2011-02-01 2015-11-12 2015-11-12 100288222 ENSG00000224948 OTTHUMG00000018533 NG_028756 PGOHUM00000238847 +HGNC:842 ATP5G2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 2|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1994-07-27 2015-11-12 2015-11-12 517 ENSG00000135390 OTTHUMG00000133442 uc009znc.4 X69908 NM_005176 "CCDS8863|CCDS31812|CCDS81694" Q06055 8328972 MGI:1915192 RGD:620051 ATP5G2 603193 objectId:803 +HGNC:844 ATP5G2P1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) pseudogene 1 pseudogene pseudogene Approved 1q32.2 01q32.2 ATP5GP1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) pseudogene 1|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) pseudogene 1|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 1" 1994-07-27 2009-12-17 2015-11-12 2015-11-12 520 ENSG00000225712 OTTHUMG00000036167 X69909 NG_004659 8328972 PGOHUM00000244407 +HGNC:19672 ATP5G2P2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) pseudogene 2 pseudogene pseudogene Approved 14q21.3 14q21.3 ATP5GP2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) pseudogene 2|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9) pseudogene 2|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 2" 2003-01-13 2009-12-17 2015-11-12 2015-11-12 319119 NG_002500 PGOHUM00000248160 +HGNC:42187 ATP5G2P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) pseudogene 3 pseudogene pseudogene Approved 2q33.1 02q33.1 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 3 2011-06-08 2015-11-12 2015-11-12 100507097 ENSG00000230482 OTTHUMG00000154410 NG_029212 PGOHUM00000241054 +HGNC:42188 ATP5G2P4 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) pseudogene 4 pseudogene pseudogene Approved Xp11.4 Xp11.4 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) pseudogene 4 2011-06-08 2015-11-12 2015-11-12 654480 ENSG00000228847 OTTHUMG00000021381 NG_005473 PGOHUM00000241249 +HGNC:843 ATP5G3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9) protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9) isoform 3|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1994-08-10 2015-11-12 2015-11-12 518 ENSG00000154518 OTTHUMG00000132425 uc002uka.5 BC106881 NM_001689 CCDS2263 P48201 7698763 MGI:2442035 RGD:620052 ATP5G3 602736 objectId:803 +HGNC:845 ATP5H ATP synthase, H+ transporting, mitochondrial Fo complex subunit D protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "ATPQ|ATP5JD" "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2015-11-12 2016-10-05 10476 ENSG00000167863 OTTHUMG00000179219 uc002jmn.2 AF087135 NM_006356 "CCDS11712|CCDS32727" O75947 11042152 MGI:1918929 RGD:620083 ATP5H objectId:804 +HGNC:31021 ATP5HP1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit D pseudogene 1 pseudogene pseudogene Approved 15q15.2 15q15.2 HsT18164 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d, pseudogene 1|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 1" 2005-11-22 2015-11-12 2015-11-12 390581 ENSG00000261679 OTTHUMG00000176546 AC009852 NG_004675 PGOHUM00000246766 +HGNC:49624 ATP5HP2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit D pseudogene 2 pseudogene pseudogene Approved 9p24.2 09p24.2 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 2 2014-01-24 2015-11-12 2015-11-12 138234 ENSG00000229184 OTTHUMG00000019452 NG_001540 PGOHUM00000235945 +HGNC:49625 ATP5HP3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit D pseudogene 3 pseudogene pseudogene Approved 9p23 09p23 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 3 2014-01-24 2015-11-12 2015-11-12 138864 ENSG00000213954 OTTHUMG00000019568 NG_023175 PGOHUM00000236389 +HGNC:49626 ATP5HP4 ATP synthase, H+ transporting, mitochondrial Fo complex subunit D pseudogene 4 pseudogene pseudogene Approved 12q15 12q15 ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d, pseudogene 4 2014-01-24 2015-11-12 2015-11-12 246723 ENSG00000234925 OTTHUMG00000169263 NG_001585 PGOHUM00000239512 +HGNC:846 ATP5I ATP synthase, H+ transporting, mitochondrial Fo complex subunit E protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit E" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2015-11-12 2015-11-12 521 ENSG00000169020 OTTHUMG00000086929 uc003gas.3 AB028624 NM_007100 CCDS3337 P56385 8702853 MGI:106636 RGD:621377 ATP5I 601519 objectId:805 +HGNC:847 ATP5J ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 CF6 coupling factor 6 "ATP5A|ATP5|ATPM" "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1993-02-25 2015-11-12 2016-10-05 522 ENSG00000154723 OTTHUMG00000078442 uc002yls.4 M37104 NM_001685 "CCDS13574|CCDS46637" P18859 "1830479|1825642" MGI:107777 RGD:621376 ATP5J 603152 objectId:807 +HGNC:848 ATP5J2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "F1Fo-ATPase|ATP5JL" "F1Fo-ATPase synthase f subunit|ATP synthase f chain, mitochondrial|F1Fo-ATP synthase complex Fo membrane domain f subunit" "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1999-07-22 2015-11-12 2015-11-12 9551 ENSG00000241468 OTTHUMG00000154609 uc003uql.4 AF047436 NM_004889 "CCDS5665|CCDS34692|CCDS47653|CCDS47654" P56134 9653160 MGI:1927558 RGD:1596067 ATP5J2 objectId:806 +HGNC:38844 ATP5J2-PTCD1 ATP5J2-PTCD1 readthrough other readthrough Approved 7q22.1 07q22.1 2011-02-21 2014-11-19 100526740 ENSG00000248919 OTTHUMG00000160779 uc011kiw.3 NM_001198879.1 CCDS56496 MGI:1919049 +HGNC:849 ATP5J2LP ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2-like pseudogene pseudogene pseudogene Approved 21q22.12 21q22.12 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2-like pseudogene|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2-like pseudogene|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2-like pseudogene" 2000-05-23 2015-11-12 2016-07-22 101241877 ENSG00000224421 OTTHUMG00000086613 NG_033132 PGOHUM00000297260 +HGNC:21540 ATP5J2P2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 pseudogene 2 pseudogene pseudogene Approved 6q21 06q21 bA249L21.4 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2 pseudogene 2|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 pseudogene 2|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 2" 2003-11-26 2015-11-12 2015-11-12 387107 NG_004672 +HGNC:21286 ATP5J2P3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 pseudogene 3 pseudogene pseudogene Approved 9q21.2 09q21.2 bA159H20.5 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2 pseudogene 3|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 pseudogene 3|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 3" 2004-08-25 2015-11-12 2015-11-12 445573 ENSG00000232851 OTTHUMG00000020052 NG_032710 PGOHUM00000236649 +HGNC:32451 ATP5J2P4 ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 pseudogene 4 pseudogene pseudogene Approved 17q23.3 17q23.3 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 pseudogene 4|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 4" 2007-08-21 2015-11-12 2016-10-05 654485 ENSG00000256826 OTTHUMG00000132312 NG_005476 PGOHUM00000294518 +HGNC:33611 ATP5J2P5 ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 pseudogene 5 pseudogene pseudogene Approved 12p13.31 12p13.31 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 pseudogene 5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 5" 2007-08-21 2015-11-12 2016-10-05 654484 ENSG00000256103 OTTHUMG00000168354 NG_005477 PGOHUM00000291193 +HGNC:33612 ATP5J2P6 ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2 pseudogene 6 pseudogene pseudogene Approved 15q22.31 15q22.31 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 pseudogene 6|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2 pseudogene 6" 2007-08-21 2015-11-12 2016-10-05 654486 ENSG00000261102 OTTHUMG00000172827 NG_005475 PGOHUM00000292992 +HGNC:23933 ATP5JP1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6 pseudogene 1|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 pseudogene 1" 2010-02-16 2015-11-12 2015-11-12 359997 ENSG00000237701 OTTHUMG00000035296 NG_002918 12815422 PGOHUM00000233903 +HGNC:14247 ATP5L ATP synthase, H+ transporting, mitochondrial Fo complex subunit G protein-coding gene gene with protein product Approved 11q23.3 11q23.3 ATP5JG "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 2001-09-18 2015-11-12 2015-11-12 10632 ENSG00000167283 OTTHUMG00000166336 uc001psx.4 AF092124 NM_006476 CCDS8397 O75964 "11230166|11042152" MGI:1351597 RGD:1303259 ATP5L +HGNC:13213 ATP5L2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G2 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 dJ222E13.5 ATP5K2 "ATP synthase, H+ transporting, mitochondrial F1F0, subunit g|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, isoform 2|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G2 pseudogene|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G2|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 2002-10-30 2015-11-12 2015-11-12 267020 ENSG00000249222 OTTHUMG00000150890 uc003bda.1 AF092923 NM_001165877 CCDS54534 Q7Z4Y8 ATP5L2 objectId:808 +HGNC:13214 ATP5LP1 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G pseudogene 1 pseudogene pseudogene Approved 11q13.1 11q13.1 ATPE5KP1 ATP5KP1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 1|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, pseudogene 1|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 1" 2001-06-25 2002-10-31 2015-11-12 2015-11-12 53411 AF261721 NG_004834 PGOHUM00000242324 +HGNC:13215 ATP5LP2 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G pseudogene 2 pseudogene pseudogene Approved 6q22.31 06q22.31 ATP5KP2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 2|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, pseudogene 2|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 2" 2001-06-25 2002-10-31 2015-11-12 2015-11-12 53410 ENSG00000232362 OTTHUMG00000015491 AF261722 NG_005040 PGOHUM00000243350 +HGNC:13216 ATP5LP3 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G pseudogene 3 pseudogene pseudogene Approved 4p15.2 04p15.2 ATP5KP3 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G, pseudogene 3|ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, pseudogene 3|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 3" 2001-06-25 2002-10-31 2015-11-12 2015-11-12 53409 ENSG00000249256 OTTHUMG00000160306 AF261723 NG_005043 PGOHUM00000250702 +HGNC:38165 ATP5LP4 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G pseudogene 4 pseudogene pseudogene Approved 4q31.23 04q31.23 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, pseudogene 4|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 4" 2010-04-22 2015-11-12 2015-11-12 100130396 ENSG00000225176 OTTHUMG00000161453 NG_022979 PGOHUM00000245727 +HGNC:38167 ATP5LP5 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G pseudogene 5 pseudogene pseudogene Approved 3q25.2 03q25.2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, pseudogene 5|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 5" 2010-04-22 2015-11-12 2015-11-12 100287091 ENSG00000242561 OTTHUMG00000159696 NG_022986 PGOHUM00000237823 +HGNC:38168 ATP5LP6 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G pseudogene 6 pseudogene pseudogene Approved 17q25.1 17q25.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, pseudogene 6|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 6" 2010-04-22 2015-11-12 2015-11-12 100462865 ENSG00000267376 OTTHUMG00000180123 NG_022453 PGOHUM00000237180 +HGNC:38169 ATP5LP7 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G pseudogene 7 pseudogene pseudogene Approved 17q21.2 17q21.2 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, pseudogene 7|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 7" 2010-04-22 2015-11-12 2015-11-12 100287964 ENSG00000267189 OTTHUMG00000180638 NG_023016 PGOHUM00000237398 +HGNC:38170 ATP5LP8 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G pseudogene 8 pseudogene pseudogene Approved 11p14.1 11p14.1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit g, pseudogene 8|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit g, pseudogene 8" 2010-04-22 2015-11-12 2015-11-12 100462862 NG_021779 PGOHUM00000242198 +HGNC:850 ATP5O ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "OSCP|ATPO" oligomycin sensitivity conferring protein "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1995-04-12 2008-07-31 2016-10-05 539 ENSG00000241837 OTTHUMG00000065186 uc002ytl.4 AF088071 NM_001697 CCDS13634 P48047 7490082 MGI:106341 RGD:621379 ATP5O 600828 3.6.3.14 +HGNC:18799 ATP5S ATP synthase, H+ transporting, mitochondrial Fo complex subunit s (factor B) protein-coding gene gene with protein product Approved 14q21.3 14q21.3 "HSU79253|ATPW" "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit s (factor B)|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit s (factor B)" 2003-01-15 2015-11-12 2015-11-12 27109 ENSG00000125375 OTTHUMG00000170866 uc001wxw.3 U79253 NM_015684 "CCDS32075|CCDS32076|CCDS45102" Q99766 "11744738|8619474" MGI:1915305 RGD:1359208 ATP5S +HGNC:25496 ATP5SL ATP5S like protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ10241 2007-12-13 2016-04-26 2016-04-26 55101 ENSG00000105341 OTTHUMG00000182342 uc002oqw.3 AK001103 NM_018035 "CCDS33032|CCDS54269|CCDS54270|CCDS54271|CCDS59389|CCDS59390|CCDS82353|CCDS82354" Q9NW81 MGI:1913599 RGD:1549698 ATP5SL +HGNC:868 ATP6AP1 ATPase H+ transporting accessory protein 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "ORF|XAP-3|VATPS1|16A|Ac45|XAP3|CF2" "ATP6S1|ATP6IP1" "ATPase, H+ transporting, lysosomal (vacuolar proton pump), subunit 1|ATPase, H+ transporting, lysosomal accessory protein 1" 1998-01-23 2003-08-29 2016-02-11 2016-02-11 537 ENSG00000071553 OTTHUMG00000033291 uc004flf.3 D16469 NM_001183 CCDS35451 Q15904 "8733135|8281148" MGI:109629 RGD:620423 ATP6AP1 300197 +HGNC:28091 ATP6AP1L ATPase H+ transporting accessory protein 1 like protein-coding gene gene with protein product Approved 5q14.2 05q14.2 ATPase, H+ transporting, lysosomal accessory protein 1-like 2009-03-18 2016-02-11 2016-02-11 92270 ENSG00000205464 OTTHUMG00000162558 uc003khv.5 AK022625 NM_001017971 CCDS34196 Q52LC2 MGI:3648665 RGD:1564936 ATP6AP1L +HGNC:18305 ATP6AP2 ATPase H+ transporting accessory protein 2 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "M8-9|APT6M8-9|ATP6M8-9|PRR|RENR" "prorenin receptor|renin receptor" ATP6IP2 "ATPase, H+ transporting, lysosomal interacting protein 2|ATPase, H+ transporting, lysosomal accessory protein 2" 2002-05-23 2003-08-29 2016-02-11 2016-02-11 10159 ENSG00000182220 OTTHUMG00000024103 uc004det.4 AF248966 NM_005765 CCDS14252 O75787 "9556572|11590366" MGI:1917745 RGD:1561269 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ATP6AP2 ATP6AP2 300556 118855 +HGNC:851 ATP6V1A ATPase H+ transporting V1 subunit A protein-coding gene gene with protein product Approved 3q13.31 03q13.31 "Vma1|VA68" "VPP2|ATP6A1|ATP6V1A1" "ATPase, H+ transporting, lysosomal (vacuolar proton pump), alpha polypeptide, 70kD, isoform 1|ATPase, H+ transporting, lysosomal 70kDa, V1 subunit A" V-type ATPases 415 1990-07-03 2003-04-25 2016-02-11 2016-02-11 523 ENSG00000114573 OTTHUMG00000159295 uc003eao.4 L09235 NM_001690 CCDS2976 P38606 8463241 MGI:1201780 RGD:1596464 ATP6V1A 607027 objectId:810 3.6.3.14 +HGNC:852 ATP6V1A2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:853 ATP6V1B1 ATPase H+ transporting V1 subunit B1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "VATB|RTA1B|Vma2" Renal tubular acidosis with deafness "VPP3|ATP6B1" "vacuolar proton pump 3|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B1" V-type ATPases 415 1990-07-03 2002-05-10 2016-02-11 2016-10-05 525 ENSG00000116039 OTTHUMG00000129711 uc002shj.4 AF107466 NM_001692 CCDS1912 P15313 "9916796|2527371" MGI:103285 RGD:1310619 ATP6V1B1 192132 118872 objectId:811 3.6.3.14 +HGNC:51118 ATP6V1B1-AS1 ATP6V1B1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p13.3 02p13.3 2014-07-30 2014-07-30 101927750 ENSG00000239322 OTTHUMG00000153727 NR_110273 +HGNC:854 ATP6V1B2 ATPase H+ transporting V1 subunit B2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "VATB|Vma2|HO57" "VPP3|ATP6B2" "ATPase, H+ transporting, lysosomal (vacuolar proton pump), beta polypeptide, 56/58kD, isoform 2|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B, isoform 2|ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2" V-type ATPases 415 1990-07-03 2002-05-10 2016-02-11 2016-02-11 526 ENSG00000147416 OTTHUMG00000131073 uc003wzp.4 L35249 NM_001693 CCDS6014 P21281 "2145275|14580332" MGI:109618 RGD:620284 ATP6V1B2 606939 410340 objectId:812 3.6.3.14 +HGNC:856 ATP6V1C1 ATPase H+ transporting V1 subunit C1 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "VATC|Vma5" "ATP6D|ATP6C" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 42kD|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C, isoform 1|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1" V-type ATPases 415 1993-07-27 2002-05-10 2016-02-11 2016-10-05 528 ENSG00000155097 OTTHUMG00000164761 uc003yla.4 X69151 NM_001695 CCDS6296 P21283 "8250920|14580332" MGI:1913585 RGD:1311082 ATP6V1C1 603097 objectId:813 3.6.3.14 +HGNC:18264 ATP6V1C2 ATPase H+ transporting V1 subunit C2 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "VMA5|ATP6C2" "ATPase, H+ transporting, lysosomal 42kD, V1 subunit C isoform 2|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C isoform 2|ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C2" V-type ATPases 415 2002-05-09 2016-02-11 2016-02-11 245973 ENSG00000143882 OTTHUMG00000090459 uc002rat.3 AY039759 NM_144583 "CCDS1674|CCDS42653" Q8NEY4 12384298 MGI:1916025 RGD:1359430 ATP6V1C2 objectId:814 +HGNC:13527 ATP6V1D ATPase H+ transporting V1 subunit D protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "VATD|VMA8" ATP6M "ATPase, H+ transporting, lysosomal (vacuolar proton pump)|ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D" V-type ATPases 415 2001-08-01 2002-05-10 2016-02-11 2016-10-05 51382 ENSG00000100554 OTTHUMG00000171244 uc001xjf.4 AF145316 NM_015994 CCDS9780 Q9Y5K8 9442887 MGI:1921084 RGD:735119 ATP6V1D 609398 objectId:815 +HGNC:857 ATP6V1E1 ATPase H+ transporting V1 subunit E1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "P31|Vma4|ATP6E2" "ATP6E|ATP6V1E" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E isoform 1|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1" V-type ATPases 415 1993-07-27 2002-06-21 2016-02-11 2016-10-05 529 ENSG00000131100 OTTHUMG00000059320 uc002zmr.3 X76228 NM_001696 "CCDS13745|CCDS42977|CCDS42978" P36543 "8004105|8250920" MGI:894326 RGD:735157 ATP6V1E1 108746 objectId:816 3.6.3.14 +HGNC:859 ATP6V1E1P1 ATPase H+ transporting V1 subunit E1 pseudogene 1 pseudogene pseudogene Approved 1p34.2 01p34.2 "ATP6EP1|ATP6V1EP1" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD pseudogene 1|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E pseudogene 1|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 1" 1993-07-27 2010-01-05 2016-02-11 2016-02-11 343515 ENSG00000225099 OTTHUMG00000007618 NG_016586 PGOHUM00000244694 +HGNC:860 ATP6V1E1P2 ATPase H+ transporting V1 subunit E1 pseudogene 2 pseudogene pseudogene Approved 18q11.2 18q11.2 "ATP6EP2|ATP6V1EP2" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD pseudogene 2|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E pseudogene 2|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 2" 1993-07-27 2010-01-05 2016-02-11 2016-02-11 100462844 NG_026284 PGOHUM00000234906 +HGNC:858 ATP6V1E1P3 ATPase H+ transporting V1 subunit E1 pseudogene 3 pseudogene pseudogene Approved 12q14.2 12q14.2 "ATP6EL1|ATP6V1EL1" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD-like 1|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E-like 1|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E-like 1 (pseudogene)|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 pseudogene 3" 1993-10-19 2010-01-05 2016-02-11 2016-02-11 729435 NG_009357 PGOHUM00000239495 +HGNC:18125 ATP6V1E2 ATPase H+ transporting V1 subunit E2 protein-coding gene gene with protein product Approved 2p21 02p21 "MGC9341|VMA4|ATP6E1" "ATP6EL2|ATP6V1EL2" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 31kD-like 2|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E isoform 2|ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E2" V-type ATPases 415 2002-02-20 2002-06-21 2016-02-11 2016-02-11 90423 ENSG00000250565 OTTHUMG00000128819 uc061ivo.1 BC008981 NM_080653 CCDS1826 Q96A05 12036578 MGI:1922165 RGD:1311680 ATP6V1E2 objectId:817 +HGNC:16832 ATP6V1F ATPase H+ transporting V1 subunit F protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "ATP6S14|VATF|Vma7" ATPase, H+ transporting, lysosomal 14kDa, V1 subunit F V-type ATPases 415 2002-05-09 2016-02-11 2016-02-11 9296 ENSG00000128524 OTTHUMG00000158365 uc003voc.3 D49400 NM_004231 "CCDS5807|CCDS56511" Q16864 "8581736|8621738" MGI:1913394 RGD:621552 ATP6V1F 607160 objectId:818 3.6.3.14 +HGNC:864 ATP6V1G1 ATPase H+ transporting V1 subunit G1 protein-coding gene gene with protein product Approved 9q32 09q32 "ATP6GL|Vma10|ATP6G|DKFZp547P234" "ATP6J|ATP6G1" "ATPase, H+ transporting, lysosomal (vacuolar proton pump), member J|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 1|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1" V-type ATPases 415 1999-07-22 2002-05-10 2016-02-11 2016-10-05 9550 ENSG00000136888 OTTHUMG00000021023 uc004bjc.4 AF038954 NM_004888 CCDS6807 O75348 9653160 MGI:1913540 RGD:1310088 ATP6V1G1 607296 objectId:819 +HGNC:19816 ATP6V1G1P1 ATPase H+ transporting V1 subunit G1 pseudogene 1 pseudogene pseudogene Approved 14q32.33 14q32.33 ATP6V1GP1 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G pseudogene 1|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 1" 2003-01-13 2010-01-05 2016-02-11 2016-02-11 319116 NG_001019 PGOHUM00000247913 +HGNC:29359 ATP6V1G1P2 ATPase H+ transporting V1 subunit G1 pseudogene 2 pseudogene pseudogene Approved 8q11.1 08q11.1 ATP6V1GP2 "ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G pseudogene 2|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 2" 2005-10-06 2010-01-05 2016-02-11 2016-10-05 100128541 ENSG00000253502 OTTHUMG00000164147 AC120036 NG_022387 PGOHUM00000249326 +HGNC:37670 ATP6V1G1P3 ATPase H+ transporting V1 subunit G1 pseudogene 3 pseudogene pseudogene Approved 9q34.3 09q34.3 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 3 2010-01-05 2016-02-11 2016-02-11 100462838 ENSG00000224662 OTTHUMG00000020944 NG_021680 PGOHUM00000236792 +HGNC:37671 ATP6V1G1P4 ATPase H+ transporting V1 subunit G1 pseudogene 4 pseudogene pseudogene Approved 10p11.21 10p11.21 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 4 2010-01-05 2016-02-11 2016-02-11 100462843 ENSG00000233343 OTTHUMG00000017951 NG_022168 PGOHUM00000238722 +HGNC:37672 ATP6V1G1P5 ATPase H+ transporting V1 subunit G1 pseudogene 5 pseudogene pseudogene Approved 5q33.1 05q33.1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 5 2010-01-05 2016-02-11 2016-02-11 100462840 NG_021901 PGOHUM00000235812 +HGNC:37673 ATP6V1G1P6 ATPase H+ transporting V1 subunit G1 pseudogene 6 pseudogene pseudogene Approved 5q14.1 05q14.1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 6 2010-01-05 2016-02-11 2016-02-11 100462732 ENSG00000249372 OTTHUMG00000162480 NG_021444 PGOHUM00000235668 +HGNC:39852 ATP6V1G1P7 ATPase H+ transporting V1 subunit G1 pseudogene 7 pseudogene pseudogene Approved 13q33.1 13q33.1 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G1 pseudogene 7 2011-08-15 2016-02-11 2016-02-11 100874514 ENSG00000230474 OTTHUMG00000017315 NG_032360 +HGNC:862 ATP6V1G2 ATPase H+ transporting V1 subunit G2 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "Vma10|NG38|Em:AC004181.3" "ATP6G|ATP6G2" "ATPase, H+ transporting, lysosomal (vacuolar proton pump)|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 2|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2" V-type ATPases 415 1997-10-10 2002-05-10 2016-02-11 2016-10-05 534 ENSG00000213760 OTTHUMG00000166618 uc021zuc.2 Y14768 NM_130463 "CCDS4698|CCDS4699|CCDS56413" O95670 10202016 MGI:1913487 RGD:1303186 ATP6V1G2 606853 objectId:820 +HGNC:41999 ATP6V1G2-DDX39B ATP6V1G2-DDX39B readthrough (NMD candidate) other readthrough Approved 6p21.33 06p21.33 2011-05-31 2013-05-09 2014-11-19 100532737 ENSG00000254870 OTTHUMG00000031200 uc063nav.1 NR_037853.1 +HGNC:18265 ATP6V1G3 ATPase H+ transporting V1 subunit G3 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "ATP6G3|Vma10" "ATPase, H+ transporting, lysosomal 13kD, V1 subunit G isoform 3|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 3|ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3" V-type ATPases 415 2002-05-09 2016-02-11 2016-10-05 127124 ENSG00000151418 OTTHUMG00000035661 uc001gup.4 AY039760 NM_133326 "CCDS1395|CCDS1396|CCDS81414" Q96LB4 9442887 MGI:2450548 RGD:1304635 ATP6V1G3 objectId:821 +HGNC:18303 ATP6V1H ATPase H+ transporting V1 subunit H protein-coding gene gene with protein product Approved 8q11.23 08q11.23 "CGI-11|SFD|VMA13|SFDalpha|SFDbeta" vacuolar ATP synthase subunit H "ATPase, H+ transporting, lysosomal 50/57kD, V1 subunit H|ATPase, H+ transporting, lysosomal 50/57kDa, V1 subunit H" V-type ATPases 415 2002-05-09 2016-02-11 2016-10-05 51606 ENSG00000047249 OTTHUMG00000164231 uc003xrm.5 AF132945 NM_015941 "CCDS6153|CCDS6154" Q9UI12 "9620685|10810093" MGI:1914864 RGD:1562450 ATP6V1H 608861 objectId:822 +HGNC:865 ATP6V0A1 ATPase H+ transporting V0 subunit a1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "a1|Vph1|Stv1" "VPP1|ATP6N1|ATP6N1A" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1A (110/116kD)|ATPase, H+ transporting, lysosomal V0 subunit a isoform 1|ATPase, H+ transporting, lysosomal V0 subunit A1|ATPase, H+ transporting, lysosomal V0 subunit a1" V-type ATPases 415 1990-07-03 2002-05-10 2016-02-11 2016-10-05 535 ENSG00000033627 OTTHUMG00000180238 uc002hzs.4 U73006 NM_001130020 "CCDS11426|CCDS45683|CCDS45684" Q93050 7774924 MGI:103286 RGD:68405 ATP6V0A1 192130 objectId:823 +HGNC:18481 ATP6V0A2 ATPase H+ transporting V0 subunit a2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "TJ6|a2|TJ6s|TJ6M|ATP6a2|J6B7|ATP6N1D|Vph1|Stv1" infantile malignant osteopetrosis "infantile malignant osteopetrosis|ATPase, H+ transporting, lysosomal V0 subunit a isoform 2|ATPase, H+ transporting, lysosomal V0 subunit A2|ATPase, H+ transporting, lysosomal V0 subunit a2" V-type ATPases 415 2002-05-09 2016-02-11 2016-02-11 23545 ENSG00000185344 OTTHUMG00000168723 uc001ufr.4 AF112972 NM_012463 CCDS9254 Q9Y487 "2247090|18157129" MGI:104855 RGD:621006 ATP6V0A2 611716 159322 objectId:824 +HGNC:866 ATP6V0A4 ATPase H+ transporting V0 subunit a4 protein-coding gene gene with protein product Approved 7q34 07q34 "RDRTA2|VPP2|RTADR|a4|Vph1|Stv1" "ATP6N1B|ATP6N2|RTA1C" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) non-catalytic accessory protein 1B|ATPase, H+ transporting, lysosomal V0 subunit a isoform 4|ATPase, H+ transporting, lysosomal V0 subunit A4|ATPase, H+ transporting, lysosomal V0 subunit a4" V-type ATPases 415 2000-03-29 2002-05-10 2016-02-11 2016-02-11 50617 ENSG00000105929 OTTHUMG00000157122 uc003vug.4 AF245517 NM_020632 CCDS5849 Q9HBG4 "10577919|10973252" MGI:2153480 RGD:1305055 ATP6V0A4 605239 118861 objectId:826 +HGNC:861 ATP6V0B ATPase H+ transporting V0 subunit b protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "VMA16|HATPL" ATP6F "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 21kD|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit c''|ATPase, H+ transporting, lysosomal 21kDa, V0 subunit b" V-type ATPases 415 1997-08-18 2002-05-10 2016-02-11 2016-10-05 533 ENSG00000117410 OTTHUMG00000008298 uc001cld.4 BC000423 NM_004047 "CCDS505|CCDS41315|CCDS72772" Q99437 9653649 MGI:1890510 RGD:1308303 ATP6V0B 603717 objectId:827 +HGNC:855 ATP6V0C ATPase H+ transporting V0 subunit c protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "VATL|Vma3" "ATPL|ATP6C|ATP6L" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 16kD|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c" V-type ATPases 415 1991-09-12 2002-05-10 2016-02-11 2016-02-11 527 ENSG00000185883 OTTHUMG00000128865 uc002cqn.4 M62762 NM_001694 CCDS10470 P27449 "1709739|8250920" MGI:88116 RGD:621394 ATP6V0C 108745 objectId:828 3.6.3.14 +HGNC:31323 ATP6V0CP1 ATPase H+ transporting V0 subunit c pseudogene 1 pseudogene pseudogene Approved 17p13.2 17p13.2 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c (ATP6VOC) pseudogene ATCD1 "ATP synthase subunit C domain containing 1|ATP synthase subunit C domain containing 1 pseudogene|ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 1" 2004-04-06 2011-04-27 2016-02-12 2016-07-22 100132978 ENSG00000230201 OTTHUMG00000132925 NG_009542 PGOHUM00000293945 +HGNC:40000 ATP6V0CP2 ATPase H+ transporting V0 subunit c pseudogene 2 pseudogene pseudogene Approved 3q13.13 03q13.13 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 2 2011-04-27 2016-02-12 2016-07-22 106478961 ENSG00000244142 OTTHUMG00000159243 NG_043815 PGOHUM00000299533 +HGNC:40001 ATP6V0CP3 ATPase H+ transporting V0 subunit c pseudogene 3 pseudogene pseudogene Approved 6p21.1 06p21.1 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 3 2011-04-27 2016-02-12 2016-07-22 442211 ENSG00000213435 OTTHUMG00000014702 NR_037141 PGOHUM00000301796 +HGNC:40002 ATP6V0CP4 ATPase H+ transporting V0 subunit c pseudogene 4 pseudogene pseudogene Approved 1p34.2 01p34.2 ATPase, H+ transporting, lysosomal 16kDa, V0 subunit c pseudogene 4 2011-04-27 2016-02-12 2016-07-22 PGOHUM00000295642 +HGNC:13724 ATP6V0D1 ATPase H+ transporting V0 subunit d1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "ATP6DV|VATX|VPATPD|P39|Vma6" ATP6D "ATPase, H+ transporting, lysosomal (vacuolar proton pump), member D|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d isoform 1|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit D1|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d1" V-type ATPases 415 2000-11-08 2002-05-10 2016-02-11 2016-10-05 9114 ENSG00000159720 OTTHUMG00000137515 uc002ete.2 X71490 NM_004691 CCDS10838 P61421 8250920 MGI:1201778 RGD:1306159 ATP6V0D1 607028 objectId:829 +HGNC:18266 ATP6V0D2 ATPase H+ transporting V0 subunit d2 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "FLJ38708|VMA6|ATP6D2" "ATPase, H+ transporting, lysosomal 38kD, V0 subunit d isoform 2|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d isoform 2|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit D2|ATPase, H+ transporting, lysosomal 38kDa, V0 subunit d2" V-type ATPases 415 2002-05-09 2002-05-24 2016-02-11 2016-02-11 245972 ENSG00000147614 OTTHUMG00000163637 uc003ydp.2 AY079172 NM_152565 CCDS6241 Q8N8Y2 12384298 MGI:1924415 RGD:1306900 ATP6V0D2 objectId:830 +HGNC:863 ATP6V0E1 ATPase H+ transporting V0 subunit e1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 M9.2 "ATP6H|ATP6V0E" "ATPase, H+ transporting, lysosomal (vacuolar proton pump) 9kD|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e|ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1" V-type ATPases 415 1999-01-15 2006-10-12 2016-02-11 2016-10-05 8992 ENSG00000113732 OTTHUMG00000130518 uc003mcd.2 Y15286 NM_003945 CCDS4383 O15342 "9556572|14970230" MGI:1328318 RGD:621393 ATP6V0E1 603931 objectId:831 +HGNC:41935 ATP6V0E1P1 ATPase H+ transporting V0 subunit e1 pseudogene 1 pseudogene pseudogene Approved 5q31.1 05q31.1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 1 2011-05-19 2016-02-11 2016-02-11 100874502 ENSG00000225364 OTTHUMG00000059840 NG_032378 PGOHUM00000235760 +HGNC:41936 ATP6V0E1P2 ATPase H+ transporting V0 subunit e1 pseudogene 2 pseudogene pseudogene Approved 3p22.1 03p22.1 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 2 2011-05-19 2016-02-11 2016-02-11 100874503 ENSG00000223513 OTTHUMG00000156188 NG_032379 PGOHUM00000237598 +HGNC:41937 ATP6V0E1P3 ATPase H+ transporting V0 subunit e1 pseudogene 3 pseudogene pseudogene Approved 2p22.3 02p22.3 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 3 2011-05-19 2016-02-11 2016-02-11 100133262 ENSG00000238038 OTTHUMG00000152159 NG_029004 PGOHUM00000240617 +HGNC:41938 ATP6V0E1P4 ATPase H+ transporting V0 subunit e1 pseudogene 4 pseudogene pseudogene Approved 1p33 01p33 ATPase, H+ transporting, lysosomal 9kDa, V0 subunit e1 pseudogene 4 2011-05-19 2016-02-11 2016-02-11 100874504 ENSG00000227883 OTTHUMG00000007966 NG_032380 PGOHUM00000244706 +HGNC:21723 ATP6V0E2 ATPase H+ transporting V0 subunit e2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "C7orf32|ATP6V0E2L" "chromosome 7 open reading frame 32|ATPase, H+ transporting V0 subunit E isoform 2-like (rat)|ATPase, H+ transporting V0 subunit e2" V-type ATPases 415 2003-07-14 2006-10-12 2016-02-11 2016-02-11 155066 ENSG00000171130 OTTHUMG00000158094 uc003wgp.3 AK057700 NM_145230 "CCDS47742|CCDS55181" Q8NHE4 MGI:1923502 RGD:1303238 ATP6V0E2 611019 objectId:832 +HGNC:44180 ATP6V0E2-AS1 ATP6V0E2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q36.1 07q36.1 ATP6V0E2 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 401431 ENSG00000204934 OTTHUMG00000158095 uc003wgn.5 BC028735 NR_027040 +HGNC:869 ATP7A ATPase copper transporting alpha protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "copper pump 1|copper-transporting ATPase 1" MNK "Menkes syndrome|ATPase, Cu++ transporting, alpha polypeptide" ATPase copper transporting 1212 1986-01-01 2016-02-10 2016-02-10 538 ENSG00000165240 OTTHUMG00000021885 uc004ecx.6 L06133 NM_000052 "CCDS35339|CCDS75997" Q04656 10079817 MGI:99400 RGD:2179 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ATP7A ATP7A 300011 118879 objectId:852 3.6.3.4 +HGNC:870 ATP7B ATPase copper transporting beta protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "Wilson disease|copper pump 2|copper-transporting ATPase 2" WND "ATPase, Cu++ transporting, beta polypeptide (Wilson disease)|ATPase, Cu++ transporting, beta polypeptide" ATPase copper transporting 1212 1986-01-01 2016-02-10 2016-02-10 540 ENSG00000123191 OTTHUMG00000017406 uc001vfw.4 U11700 NM_000053 "CCDS41892|CCDS45049|CCDS58293|CCDS81768" P35670 "8298641|8298639" MGI:103297 RGD:2180 "Wilson Disease Mutation Database|http://www.medicalgenetics.med.ualberta.ca/wilson/index.php|UMD Locus Specific Databases|http://www.umd.be/" ATP7B 606882 118882 objectId:853 3.6.3.4 +HGNC:31014 ATP7BP1 ATPase copper transporting beta pseudogene 1 pseudogene pseudogene Approved 18q11.2 18q11.2 ATPase, Cu++ transporting, beta polypeptide pseudogene 1 2010-04-20 2016-02-10 2016-02-10 100462825 NG_022482 PGOHUM00000234894 +HGNC:13531 ATP8A1 ATPase phospholipid transporting 8A1 protein-coding gene gene with protein product Approved 4p13 04p13 ATPIA "ATPase, aminophospholipid transporter (APLT), Class I, type 8A, member 1|ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1" ATPase phospholipid transporting 1210 2000-09-20 2016-02-11 2016-06-28 10396 ENSG00000124406 OTTHUMG00000099403 uc003gwr.3 AF067820 NM_006095 "CCDS3466|CCDS47049" Q9Y2Q0 "10198212|9548971" MGI:1330848 RGD:1309619 ATP8A1 609542 objectId:854 +HGNC:13533 ATP8A2 ATPase phospholipid transporting 8A2 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 "ATPIB|ML-1" "ATPase, aminophospholipid transporter-like, Class I, type 8A, member 2|ATPase, aminophospholipid transporter-like, class I, type 8A, member 2|ATPase, aminophospholipid transporter, class I, type 8A, member 2" ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-10-05 51761 ENSG00000132932 OTTHUMG00000016611 uc001uqk.4 AL137256 NM_016529 CCDS41873 Q9NTI2 "11015572|19778899" MGI:1354710 RGD:1594597 ATP8A2 605870 327294 objectId:855 3.6.3.1 +HGNC:39662 ATP8A2P1 ATPase phospholipid transporting 8A2 pseudogene 1 pseudogene pseudogene Approved 10p11.21 10p11.21 ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 1 2011-03-18 2016-02-11 2016-02-11 100422505 ENSG00000240800 OTTHUMG00000017970 NG_025483 PGOHUM00000238726 +HGNC:39663 ATP8A2P2 ATPase phospholipid transporting 8A2 pseudogene 2 pseudogene pseudogene Approved 13q13.1 13q13.1 ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 2 2011-03-18 2016-02-11 2016-02-11 100533851 ENSG00000229800 OTTHUMG00000016698 NG_028886 PGOHUM00000248564 +HGNC:42641 ATP8A2P3 ATPase phospholipid transporting 8A2 pseudogene 3 pseudogene pseudogene Approved 13q12.13 13q12.13 ATPase, aminophospholipid transporter, class I, type 8A, member 2 pseudogene 3 2011-08-10 2016-02-11 2016-02-11 100874518 ENSG00000233963 OTTHUMG00000016613 NG_032522 +HGNC:3706 ATP8B1 ATPase phospholipid transporting 8B1 protein-coding gene gene with protein product Approved 18q21.31 18q21.31 "ATPIC|PFIC" "FIC1|BRIC|PFIC1" "ATPase, Class I, type 8B, member 1|ATPase, class I, type 8B, member 1|ATPase, aminophospholipid transporter, class I, type 8B, member 1" ATPase phospholipid transporting 1210 1996-12-17 2016-02-11 2016-10-05 5205 ENSG00000081923 OTTHUMG00000180255 uc002lgw.5 AF038007 NM_005603 CCDS11965 O43520 "9500542|7655458" MGI:1859665 RGD:1308488 ATP8B1 602397 118885 objectId:856 3.6.3.1 +HGNC:13534 ATP8B2 ATPase phospholipid transporting 8B2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "ATPID|KIAA1137" "ATPase, class I, type 8B, member 2|ATPase, aminophospholipid transporter, class I, type 8B, member 2" ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 57198 ENSG00000143515 OTTHUMG00000035979 uc001fex.4 AB032963 NM_020452 "CCDS1066|CCDS41405" P98198 "10574461|11015572" MGI:1859660 RGD:1597731 ATP8B2 605867 objectId:857 3.6.3.1 +HGNC:13535 ATP8B3 ATPase phospholipid transporting 8B3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ATPIK "aminophospholipid translocase ATP8B3|potential phospholipid-transporting ATPase IK" "ATPase, Class I, type 8B, member 3|ATPase, class I, type 8B, member 3|ATPase, aminophospholipid transporter, class I, type 8B, member 3" ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 148229 ENSG00000130270 OTTHUMG00000166189 uc002ltw.4 AA827939 NM_138813 "CCDS45901|CCDS54196" O60423 11015572 MGI:1914581 RGD:1307622 ATP8B3 605866 objectId:858 3.6.3.1 +HGNC:13536 ATP8B4 ATPase phospholipid transporting 8B4 (putative) protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "ATPIM|KIAA1939" "ATPase, Class I, type 8B, member 4|ATPase, class I, type 8B, member 4" ATPase phospholipid transporting 1210 2005-01-26 2016-02-11 2016-06-28 79895 ENSG00000104043 OTTHUMG00000172368 uc001zxu.4 AB075819 NM_024837 CCDS32238 Q8TF62 11015572 MGI:1859664 RGD:1306712 ATP8B4 609123 objectId:859 3.6.3.1 +HGNC:27245 ATP8B5P ATPase phospholipid transporting 8B5, pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 FetA flippase expressed in testis splicing form A pseudogene ATPase, class I, type 8B, member 5, pseudogene ATPase phospholipid transporting 1210 2010-05-06 2016-02-11 2016-02-11 158381 ENSG00000179766 OTTHUMG00000019862 NR_003581.1 "20210903|19657017" MGI:2444287 +HGNC:13540 ATP9A ATPase phospholipid transporting 9A (putative) protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "KIAA0611|ATPIIA" ATPase, class II, type 9A ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 10079 ENSG00000054793 OTTHUMG00000032751 uc002xwg.2 AB014511 NM_006045 CCDS33489 O75110 "9734811|11015572" MGI:1330826 RGD:621421 ATP9A 609126 objectId:860 3.6.3.1 +HGNC:13541 ATP9B ATPase phospholipid transporting 9B (putative) protein-coding gene gene with protein product Approved 18q23 18q23 ATPIIB ATPase, class II, type 9B ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 374868 ENSG00000166377 OTTHUMG00000132898 uc002lmw.2 R51412 NM_198531 "CCDS12014|CCDS77202" O43861 "9548971|11015572" MGI:1354757 RGD:1563006 ATP9B 614446 objectId:861 +HGNC:13542 ATP10A ATPase phospholipid transporting 10A (putative) protein-coding gene gene with protein product Approved 15q12 15q12 "ATPVA|ATPVC|KIAA0566" ATP10C "ATPase, Class V, type 10C|ATPase, Class V, type 10A" ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 57194 ENSG00000206190 OTTHUMG00000171703 uc010ayu.4 AB011138 NM_024490 CCDS32178 O60312 "11015572|25947375" MGI:1330809 RGD:1306150 ATP10A 605855 121487 objectId:862 +HGNC:13543 ATP10B ATPase phospholipid transporting 10B (putative) protein-coding gene gene with protein product Approved 5q34 05q34 "ATPVB|KIAA0715|FLJ21477" ATPase, Class V, type 10B ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 23120 ENSG00000118322 OTTHUMG00000163551 uc003lym.1 AB018258 NM_025153 CCDS43394 O94823 "9872452|11015572" MGI:2442688 RGD:1565126 ATP10B objectId:863 +HGNC:13549 ATP10D ATPase phospholipid transporting 10D (putative) protein-coding gene gene with protein product Approved 4p12 04p12 "ATPVD|KIAA1487" ATPase, Class V, type 10D ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 57205 ENSG00000145246 OTTHUMG00000160784 uc003gxk.2 AB040920 NM_020453 CCDS3476 Q9P241 12532265 MGI:2450125 RGD:1588541 ATP10D objectId:864 +HGNC:13552 ATP11A ATPase phospholipid transporting 11A protein-coding gene gene with protein product Approved 13q34 13q34 "ATPIH|ATPIS|KIAA1021" "potential phospholipid-transporting ATPase IH|phospholipid-translocating ATPase" ATPase, Class VI, type 11A ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 23250 ENSG00000068650 OTTHUMG00000017371 uc058yjm.1 AB028944 NM_015205 CCDS32011 P98196 "11015572|26567335" MGI:1354735 RGD:1308688 ATP11A 605868 353241 objectId:865 3.6.3.1 +HGNC:40645 ATP11A-AS1 ATP11A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 ATP11A antisense RNA 1 (non-protein coding) 2011-05-05 2012-08-15 2014-11-19 100874205 ENSG00000232684 OTTHUMG00000017370 uc001vsk.5 NR_046661 +HGNC:33793 ATP11AUN ATP11A upstream neighbor other unknown Approved 13q34 13q34 "FLJ26443|SMABLO1" small blood protein 1 C13orf35 chromosome 13 open reading frame 35 2008-02-21 2014-02-11 2014-02-11 2015-03-18 400165 ENSG00000197595 OTTHUMG00000056478 AK129953 NM_207440 Q6ZP68 +HGNC:13553 ATP11B ATPase phospholipid transporting 11B (putative) protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "ATPIF|ATPIR|KIAA0956" ATPase, Class VI, type 11B ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-10-05 23200 ENSG00000058063 OTTHUMG00000158295 uc003flb.4 AF156548 NM_014616 CCDS33896 Q9Y2G3 "10231032|11015572" MGI:1923545 RGD:1561719 ATP11B 605869 objectId:866 +HGNC:13554 ATP11C ATPase phospholipid transporting 11C protein-coding gene gene with protein product Approved Xq27.1 Xq27.1 "ATPIG|ATPIQ" ATPase, Class VI, type 11C ATPase phospholipid transporting 1210 2000-09-25 2016-02-11 2016-06-28 286410 ENSG00000101974 OTTHUMG00000022538 uc004faz.4 AJ580094 NM_173694 "CCDS14668|CCDS35410" Q8NB49 "11015572|26567335" MGI:1859661 RGD:1564481 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ATP11C ATP11C 300516 objectId:867 +HGNC:13816 ATP12A ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding gene gene with protein product Approved 13q12.12 13q12.12 "HK|#945|2" "ATPase, Na+K+ transporting, alpha-1 polypeptide-like|potassium-transporting ATPase alpha chain 2|proton pump|non-gastric H(+)/K(+) ATPase alpha subunit|sodium/potassium ATPase, alpha polypeptide-like" ATP1AL1 "ATPase, Na+/K+ transporting, alpha polypeptide-like 1|ATPase, H+/K+ transporting, nongastric, alpha polypeptide" ATPase H+/K+ transporting 1211 2000-11-09 2016-02-11 2016-10-05 479 ENSG00000075673 OTTHUMG00000016588 uc001upp.4 L42558 NM_001676 "CCDS31948|CCDS53858" P54707 "8838794|2842249|25322912" MGI:1926943 RGD:620569 ATP12A 182360 objectId:850 3.6.3.10 +HGNC:24215 ATP13A1 ATPase 13A1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "KIAA1825|FLJ31858|CGI-152" cation transporting ATPase ATP13A "ATPase type 13A|ATPase type 13A1" ATPase orphan transporters 1213 2004-02-12 2005-01-12 2016-02-11 2016-02-11 57130 ENSG00000105726 OTTHUMG00000153016 uc002nnh.5 AK056420 NM_020410 CCDS32970 Q9HD20 11347906 MGI:2180801 RGD:1306033 ATP13A1 +HGNC:30213 ATP13A2 ATPase 13A2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "HSA9947|CLN12" PARK9 "Parkinson disease (autosomal recessive) 9 (Kufor-Rakeb syndrome)|ATPase type 13A2" "Parkinson disease associated genes|ATPase orphan transporters" "672|1213" 2005-01-12 2016-02-11 2016-10-12 23400 ENSG00000159363 OTTHUMG00000002293 uc001baa.3 AL354615 NM_022089 "CCDS175|CCDS44072|CCDS44073" Q9NQ11 "15381061|16964263" MGI:1922022 RGD:1307977 LRG_834|http://www.lrg-sequence.org/LRG/LRG_834 ATP13A2 610513 121493 +HGNC:24113 ATP13A3 ATPase 13A3 protein-coding gene gene with protein product Approved 3q29 03q29 AFURS1 ATPase family homolog up regulated in senescence cells ATPase type 13A3 ATPase orphan transporters 1213 2005-01-12 2016-02-11 2016-02-11 79572 ENSG00000133657 OTTHUMG00000156034 uc062rov.1 AJ306929 NM_024524 CCDS43187 Q9H7F0 11867234 MGI:2685387 RGD:1590881 ATP13A3 610232 +HGNC:25422 ATP13A4 ATPase 13A4 protein-coding gene gene with protein product Approved 3q29 03q29 "DKFZp761I1011|FLJ37958" ATPase type 13A4 ATPase orphan transporters 1213 2005-01-12 2016-02-11 2016-02-11 84239 ENSG00000127249 OTTHUMG00000074067 uc003ftd.4 AK095277 NM_032279 CCDS3304 Q4VNC1 "14702039|12975309" MGI:1924456 RGD:1306927 ATP13A4 609556 +HGNC:41095 ATP13A4-AS1 ATP13A4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 ATP13A4 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 101929198 ENSG00000225473 OTTHUMG00000156102 uc062rmh.1 NR_121666 +HGNC:31789 ATP13A5 ATPase 13A5 protein-coding gene gene with protein product Approved 3q29 03q29 FLJ16025 ATPase type 13A5 ATPase orphan transporters 1213 2005-01-12 2016-02-11 2016-02-11 344905 ENSG00000187527 OTTHUMG00000156101 uc011bsq.3 AK122613 NM_198505 CCDS33914 Q4VNC0 MGI:2444068 RGD:1306792 ATP13A5 +HGNC:41281 ATP13A5-AS1 ATP13A5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 ATP13A5 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874218 ENSG00000236508 OTTHUMG00000156106 uc062rlw.1 NR_046758 +HGNC:29452 ATP23 ATP23 metallopeptidase and ATP synthase assembly factor homolog protein-coding gene gene with protein product Approved 12q14.1 12q14.1 KUB3 Ku70 binding protein 3 XRCC6BP1 "XRCC6 binding protein 1|ATP23 metallopeptidase and ATP synthase assembly factor homolog (S. cerevisiae)" 2006-01-09 2016-02-12 2016-07-04 2016-07-04 91419 ENSG00000166896 OTTHUMG00000170493 uc001sqp.4 AF078164 NM_033276 CCDS41802 Q9Y6H3 "10219089|17135290" MGI:1916984 RGD:1588587 M76.001 +HGNC:18803 ATPAF1 ATP synthase mitochondrial F1 complex assembly factor 1 protein-coding gene gene with protein product Approved 1p33 01p33 "FLJ22351|Atp11p|ATP11" Mitochondrial respiratory chain complex assembly factors 645 2002-07-01 2016-04-25 64756 ENSG00000123472 OTTHUMG00000007988 uc001cqh.5 AK026004 NM_022745 "CCDS41327|CCDS541|CCDS57997|CCDS57998" Q5TC12 11410595 MGI:2180560 RGD:1305417 ATPAF1 608917 377752 +HGNC:18802 ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "Atp12p|ATP12|LP3663|MGC29736" Mitochondrial respiratory chain complex assembly factors 645 2002-07-01 2014-11-18 91647 ENSG00000171953 OTTHUMG00000059354 uc002gse.2 AF052185 NM_145691 CCDS32585 Q8N5M1 "11410595|11997338" MGI:2180561 RGD:1305161 ATPAF2 608918 118892 +HGNC:871 ATPIF1 ATPase inhibitory factor 1 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "ATPI|IP|ATPIP|MGC1167|MGC8898" "ATPase inhibitor protein|ATP synthase inhibitor protein" Mitochondrial complex V: ATP synthase subunits 644 2000-02-29 2014-11-18 93974 ENSG00000130770 OTTHUMG00000003533 uc001bpq.4 AL050386 NM_016311 "CCDS319|CCDS320|CCDS44096" Q9UII2 "10664857|19559621" MGI:1196457 RGD:2181 ATPIF1 614981 +HGNC:876 ATPSBL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:882 ATR ATR serine/threonine kinase protein-coding gene gene with protein product Approved 3q23 03q23 "FRP1|SCKL|SCKL1|MEC1" MEC1, mitosis entry checkpoint 1, homolog (S. cerevisiae) ataxia telangiectasia and Rad3 related 1998-04-06 2014-06-17 2015-08-24 545 ENSG00000175054 OTTHUMG00000159234 uc003eux.5 U76308 NM_001184 CCDS3124 Q13535 "8978690|8610130" MGI:108028 RGD:1305796 ATR 601215 118896 objectId:1935 +HGNC:24090 ATRAID all-trans retinoic acid induced differentiation factor protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "HSPC013|p18|APR3" apoptosis-related protein 3 C2orf28 chromosome 2 open reading frame 28 2004-05-10 2012-07-30 2015-12-02 2015-12-02 51374 ENSG00000138085 OTTHUMG00000128405 uc061hlo.1 BC021237 NM_016085 "CCDS1741|CCDS46243|CCDS62877" Q6UW56 "17524364|21723284" MGI:1918918 RGD:1311605 +HGNC:33499 ATRIP ATR interacting protein protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "FLJ12343|MGC20625|MGC21482|MGC26740" 2007-06-20 2015-01-28 84126 ENSG00000164053 OTTHUMG00000133532 uc003ctf.3 AF451323 NM_130384 "CCDS2767|CCDS2768|CCDS59449|CCDS59450" Q8WXE1 11721054 MGI:1925349 RGD:1626390 ATRIP 606605 318853 +HGNC:885 ATRN attractin protein-coding gene gene with protein product Approved 20p13 20p13 "DPPT-L|MGCA" mahogany protein C-type lectin domain containing 1298 1998-10-30 2015-08-26 8455 ENSG00000088812 OTTHUMG00000031746 uc002wim.3 AF034957 NM_139321 "CCDS13053|CCDS13054" O75882 "9736737|8596018" MGI:1341628 RGD:69063 ATRN 603130 +HGNC:29063 ATRNL1 attractin like 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "KIAA0534|FLJ45344|ALP" attractin-like 1 C-type lectin domain containing 1298 2004-03-04 2015-11-23 2016-10-05 26033 ENSG00000107518 OTTHUMG00000019096 uc001lcg.4 AB011106 XM_049349 "CCDS7592|CCDS73204" Q5VV63 9628581 MGI:2147749 RGD:1563485 ATRNL1 612869 +HGNC:886 ATRX ATRX, chromatin remodeler protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "XH2|XNP" RAD54 homolog (S. cerevisiae) "RAD54|JMS|MRX52" "alpha thalassemia/mental retardation syndrome X-linked (RAD54 (S. cerevisiae) homolog)|Juberg-Marsidi syndrome|mental retardation, X-linked 52|alpha thalassemia/mental retardation syndrome X-linked" "X-linked mental retardation|RNA helicases" "103|1168" 1992-11-27 2016-05-19 2016-05-19 546 ENSG00000085224 OTTHUMG00000022686 uc004ecp.5 U72937 NM_000489 "CCDS14434|CCDS14435" P46100 "7874112|1415255|8503439|8630485" MGI:103067 RGD:619795 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ATRX|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=ATRX" ATRX "300032|300504" 118908 3.6.4.12 +HGNC:10548 ATXN1 ataxin 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "D6S504E|ATX1" SCA1 spinocerebellar ataxia 1 (olivopontocerebellar ataxia 1, autosomal dominant, ataxin 1) Ataxins 411 1986-01-01 2004-08-13 2004-08-12 2016-10-12 6310 ENSG00000124788 OTTHUMG00000014303 uc010jpi.3 X79204 NM_000332 CCDS34342 P54253 1582256 MGI:104783 RGD:3624 LRG_863|http://www.lrg-sequence.org/LRG/LRG_863 ATXN1 601556 118913 +HGNC:33279 ATXN1L ataxin 1 like protein-coding gene gene with protein product Approved 16q22.2 16q22.2 BOAT1 brother of ataxin 1 ataxin 1-like 2007-08-03 2016-01-19 2016-01-19 342371 ENSG00000224470 OTTHUMG00000176872 uc002fbd.3 NM_001137675.2 CCDS45523 P0C7T5 "16121196|17322884|21475249" MGI:3694797 RGD:1561758 ATXN1L 614301 +HGNC:10555 ATXN2 ataxin 2 protein-coding gene gene with protein product Approved 12q24.12 12q24.12 ATX2 trinucleotide repeat containing 13 "SCA2|TNRC13" spinocerebellar ataxia 2 (olivopontocerebellar ataxia 2, autosomal dominant, ataxin 2) "Ataxins|Trinucleotide repeat containing" "411|775" 1991-08-06 2004-08-13 2004-08-12 2016-10-12 6311 ENSG00000204842 OTTHUMG00000133475 uc001tsj.3 U80749 NM_002973 "CCDS31902|CCDS81738|CCDS81739" Q99700 "8358438|9225980" MGI:1277223 RGD:1306637 LRG_864|http://www.lrg-sequence.org/LRG/LRG_864 ATXN2 601517 118923 +HGNC:51838 ATXN2-AS ATXN2 antisense RNA non-coding RNA RNA, long non-coding Approved 12q24.12 12q24.12 2016-05-12 2016-05-12 102723619 ENSG00000258099 OTTHUMG00000169599 +HGNC:31326 ATXN2L ataxin 2 like protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "A2lp|A2D" ataxin 2-like 2004-08-18 2016-01-19 2016-10-05 11273 ENSG00000168488 OTTHUMG00000097038 uc002dqy.5 NM_007245 "CCDS10639|CCDS10640|CCDS10641|CCDS32423|CCDS45451|CCDS58443|CCDS76850" Q8WWM7 "11784712|14769358" MGI:2446242 RGD:1565868 ATXN2L 607931 +HGNC:7106 ATXN3 ataxin 3 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "ATX3|JOS" "SCA3|MJD" Machado-Joseph disease (spinocerebellar ataxia 3, olivopontocerebellar ataxia 3, autosomal dominant, ataxin 3) "Ataxins|MJD deubiquinating enzymes" "411|997" 1987-09-11 2004-08-13 2004-08-12 2016-10-12 4287 ENSG00000066427 OTTHUMG00000162212 uc001yac.5 U64820 NM_004993 "CCDS9900|CCDS32143|CCDS45154|CCDS53908|CCDS73680" P54252 8358439 MGI:1099442 RGD:621567 LRG_865|http://www.lrg-sequence.org/LRG/LRG_865 ATXN3 607047 118928 C86.001 +HGNC:24173 ATXN3L ataxin 3 like protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 MJDL ataxin 3-like MJD deubiquinating enzymes 997 2004-08-20 2016-01-19 2016-10-05 92552 ENSG00000123594 OTTHUMG00000021146 uc010ned.4 NM_001135995 CCDS48080 Q9H3M9 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ATXN3L ATXN3L 300920 C86.002 +HGNC:10560 ATXN7 ataxin 7 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "OPCA3|ADCAII" SCA7 spinocerebellar ataxia 7 (olivopontocerebellar atrophy with retinal degeneration) "Ataxins|SAGA complex" "411|1059" 1995-02-22 2004-08-12 2004-08-12 2016-10-12 6314 ENSG00000163635 OTTHUMG00000158763 uc003dlw.5 AJ000517 NM_000333 "CCDS43102|CCDS46861|CCDS54603" O15265 "7647798|10598805" MGI:2179277 RGD:1562692 LRG_866|http://www.lrg-sequence.org/LRG/LRG_866 ATXN7 607640 118934 +HGNC:22210 ATXN7L1 ataxin 7 like 1 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 "KIAA1218|MGC33190" ATXN7L4 "ataxin 7-like 4|ataxin 7-like 1" 2004-08-18 2016-01-19 2016-10-05 222255 ENSG00000146776 OTTHUMG00000157521 uc003vde.3 AB033044 XM_017011858 "CCDS34727|CCDS47682|CCDS47683" Q9ULK2 15115762 MGI:3584458 RGD:1305730 ATXN7L1 +HGNC:28713 ATXN7L2 ataxin 7 like 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "MGC46534|FLJ00381" ataxin 7-like 2 2004-08-18 2016-01-19 2016-10-05 127002 ENSG00000162650 OTTHUMG00000011027 uc001dxr.4 BC037582 NM_153340 CCDS30794 Q5T6C5 12477932 MGI:1919772 RGD:1307047 ATXN7L2 +HGNC:25416 ATXN7L3 ataxin 7 like 3 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 DKFZp761G2113 ataxin 7-like 3 SAGA complex 1059 2004-08-18 2016-01-19 2016-10-05 56970 ENSG00000087152 OTTHUMG00000181812 uc002iga.4 AK056002 NM_020218 "CCDS42345|CCDS45697" Q14CW9 15115762 MGI:3036270 RGD:1311493 ATXN7L3 +HGNC:37931 ATXN7L3B ataxin 7 like 3B protein-coding gene gene with protein product Approved 12q21.1 12q21.1 lnc-SCA7 ataxin 7-like 3B 2010-04-20 2016-01-19 2016-10-05 552889 ENSG00000253719 OTTHUMG00000163936 uc001sxd.5 NM_001136262 CCDS53815 Q96GX2 25306109 MGI:1914971 RGD:2301984 ATXN7L3B 615579 +HGNC:32925 ATXN8 ataxin 8 protein-coding gene gene with protein product Approved 13q21.33 13q21.33 Ataxins 411 2006-07-18 2013-02-15 724066 DQ641254 Q156A1 16804541 613289 118939 +HGNC:10561 ATXN8OS ATXN8 opposite strand (non-protein coding) non-coding RNA RNA, long non-coding Approved 13q21.33 13q21.33 NCRNA00003 non-protein coding RNA 3 "SCA8|KLHL1AS" "spinocerebellar ataxia 8|kelch-like 1 antisense (Drosophila)" Long non-coding RNAs 788 1998-04-01 2006-07-18 2008-08-13 2016-10-05 6315 ENSG00000230223 OTTHUMG00000017057 uc010aej.2 AF126749 NR_002717 P0DMR3 "10192387|16804541" 603680 158384 sca8 +HGNC:10549 ATXN10 ataxin 10 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "E46L|FLJ37990" SCA10 spinocerebellar ataxia 10 Ataxins 411 1999-04-16 2004-08-12 2004-08-12 2016-10-05 25814 ENSG00000130638 OTTHUMG00000150451 uc003bgm.3 AK095309 NM_013236 "CCDS14070|CCDS54540" Q9UBB4 9973298 MGI:1859293 RGD:621813 ATXN10 611150 118918 +HGNC:890 AUH AU RNA binding methylglutaconyl-CoA hydratase protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "AU RNA-binding protein/enoyl-Coenzyme A hydratase|AU RNA binding protein/enoyl-Coenzyme A hydratase|AU RNA binding protein/enoyl-CoA hydratase" 1995-10-02 2016-07-21 2016-10-12 549 ENSG00000148090 OTTHUMG00000020207 uc004arf.5 X79888 XM_005252066 "CCDS6689|CCDS78409" Q13825 "7892223|24598254" MGI:1338011 RGD:1306087 LRG_449|http://www.lrg-sequence.org/LRG/LRG_449 AUH 600529 118941 4.2.1.18 +HGNC:28363 AUNIP aurora kinase A and ninein interacting protein protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "MGC2603|AIBp" C1orf135 chromosome 1 open reading frame 135 2005-07-05 2012-08-07 2012-08-07 2014-11-19 79000 ENSG00000127423 OTTHUMG00000007372 uc001bkw.3 NM_024037 "CCDS266|CCDS72731" Q9H7T9 20596670 MGI:1917135 RGD:1589922 AUNIP +HGNC:31916 AUNX1 auditory neuropathy, X-linked recessive 1 phenotype phenotype only Approved Xq23-q27.3 Xq23-q27.3 DFNX5 2006-08-29 2014-01-28 751798 "12972945|16816020" +HGNC:891 AUP1 ancient ubiquitous protein 1 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 1996-06-14 2016-10-05 550 ENSG00000115307 OTTHUMG00000129964 uc002smf.4 NM_181575 CCDS42702 Q9Y679 "8812468|12042322" MGI:107789 RGD:1591777 AUP1 602434 +HGNC:11393 AURKA aurora kinase A protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "BTAK|AurA|STK7|ARK1|PPP1R47|AIK" "protein phosphatase 1, regulatory subunit 47|Aurora-A kinase" "STK15|STK6" "serine/threonine kinase 15| serine/threonine kinase 6" Protein phosphatase 1 regulatory subunits 694 1998-10-02 2003-07-23 2003-07-21 2016-10-05 6790 ENSG00000087586 OTTHUMG00000032796 uc002xxg.2 BC001280 NM_003600 CCDS13451 O14965 "9174055|9771714" MGI:894678 RGD:628895 AURKA 603072 objectId:1936 +HGNC:24114 AURKAIP1 aurora kinase A interacting protein 1 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "AKIP|AIP|FLJ20608" 2005-07-18 2014-11-18 54998 ENSG00000175756 OTTHUMG00000001413 uc001afc.3 NM_017900 CCDS25 Q9NWT8 12244051 MGI:1913327 AURKAIP1 609183 +HGNC:18611 AURKAPS1 aurora kinase A pseudogene 1 pseudogene pseudogene Approved 1q41 01q41 AurAps1 STK6P serine/threonine kinase 6 pseudogene 2003-07-21 2014-11-19 6791 ENSG00000213033 OTTHUMG00000037286 BC050630 NR_001587 9605851 PGOHUM00000244426 +HGNC:18612 AURKAPS2 aurora kinase A pseudogene 2 pseudogene pseudogene Approved 10q25.3 10q25.3 STK6LP 2003-07-21 2016-08-15 386665 ENSG00000230165 OTTHUMG00000019084 NG_003111 +HGNC:11390 AURKB aurora kinase B protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "Aik2|IPL1|AurB|AIM-1|ARK2|STK5|PPP1R48" "aurora-B|aurora-1|protein phosphatase 1, regulatory subunit 48" STK12 serine/threonine kinase 12 "Protein phosphatase 1 regulatory subunits|Chromosomal passenger complex" "694|1338" 1999-01-29 2003-07-23 2003-07-21 2015-09-11 9212 ENSG00000178999 OTTHUMG00000108189 uc002gkm.5 AF004022 NM_004217 "CCDS11134|CCDS58514|CCDS67162|CCDS82065" Q96GD4 9858806 MGI:107168 RGD:621625 AURKB 604970 objectId:1937 +HGNC:18613 AURKBPS1 aurora kinase B pseudogene 1 pseudogene pseudogene Approved 8q23.1 08q23.1 AurBps1 2003-07-21 2014-11-18 644233 NG_022401 +HGNC:11391 AURKC aurora kinase C protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "AurC|ARK3" STK13 serine/threonine kinase 13 (aurora/IPL1-like) 1998-05-13 2003-07-23 2003-07-21 2015-08-27 6795 ENSG00000105146 OTTHUMG00000183106 uc002qoe.4 NM_003160 "CCDS33128|CCDS46205|CCDS46206" Q9UQB9 9799611 MGI:1321119 RGD:1309573 AURKC 603495 160048 objectId:1938 +HGNC:892 AUTS1 autism susceptibility 1 phenotype phenotype only Approved 7q 07q 1998-09-08 1998-09-08 9546821 +HGNC:14262 AUTS2 autism susceptibility candidate 2 protein-coding gene gene with protein product Approved 7q11.22 07q11.22 "KIAA0442|FBRSL2" 2002-11-20 2015-08-27 26053 ENSG00000158321 OTTHUMG00000023865 uc003tvw.5 AF326917 XM_011516010 "CCDS5539|CCDS47601|CCDS47602" Q8WXX7 "12160723|25519132" MGI:1919847 RGD:2323959 AUTS2 607270 159134 +HGNC:13217 AUXN entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13509 AVEN apoptosis and caspase activation inhibitor protein-coding gene gene with protein product Approved 15q14 15q14 PDCD12 "cell death regulator aven|programmed cell death 12" 2002-09-17 2008-07-07 2016-02-05 2016-10-05 57099 ENSG00000169857 OTTHUMG00000129371 uc001zhj.4 AF283508 NM_020371 CCDS10030 Q9NQS1 10949025 MGI:1921518 RGD:1309928 AVEN 605265 +HGNC:14188 AVIL advillin protein-coding gene gene with protein product Approved 12q14.1 12q14.1 "p92|FLJ12386|ADVIL|DOC6" Gelsolin/villins 950 2002-09-02 2015-09-11 10677 ENSG00000135407 OTTHUMG00000170461 uc001sqj.4 AF041449 NM_006576 CCDS8959 O75366 "9664034|12034507" MGI:1333798 RGD:620301 AVIL 613397 +HGNC:28994 AVL9 AVL9 cell migration associated protein-coding gene gene with protein product Approved 7p14.3 07p14.3 KIAA0241 "KIAA0241|AVL9 homolog (S. cerevisiase)" 2006-02-13 2008-10-03 2016-02-03 2016-02-03 23080 ENSG00000105778 OTTHUMG00000152929 uc003tcv.2 D87682 NM_015060 CCDS34613 Q8NBF6 "17229886|22595670" MGI:1926187 RGD:1564615 AVL9 612927 +HGNC:894 AVP arginine vasopressin protein-coding gene gene with protein product Approved 20p13 20p13 ADH "antidiuretic hormone|neurophysin II|diabetes insipidus|neurohypophyseal|prepro-AVP-NP II|prepro-arginine-vasopressin-neurophysin II|copeptin" ARVP Endogenous ligands 542 1986-01-01 2008-07-31 2016-10-12 551 ENSG00000101200 OTTHUMG00000031733 uc002whu.3 M25647 NM_000490 CCDS13045 P01185 1840604 MGI:88121 RGD:2184 "nndi|http://www.medgen.mcgill.ca/nndi/home.php?select_db=AVP|LRG_715|http://www.lrg-sequence.org/LRG/LRG_715" AVP 192340 118943 +HGNC:30898 AVPI1 arginine vasopressin induced 1 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "VIP32|PP5395|VIT32" arginine vasopressin-induced 1 2004-04-05 2015-12-04 2015-12-04 60370 ENSG00000119986 OTTHUMG00000018864 uc057vge.1 AF131791 NM_021732 CCDS7470 Q5T686 "8619474|9110174" MGI:1916784 RGD:621721 AVPI1 +HGNC:895 AVPR1A arginine vasopressin receptor 1A protein-coding gene gene with protein product Approved 12q14.2 12q14.2 AVPR1 Arginine vasopressin and oxytocin receptors 259 1992-02-28 2015-08-24 552 ENSG00000166148 OTTHUMG00000169980 uc001sro.3 L25615 NM_000706 CCDS8965 P37288 8106369 MGI:1859216 RGD:2185 AVPR1A 600821 objectId:366 +HGNC:896 AVPR1B arginine vasopressin receptor 1B protein-coding gene gene with protein product Approved 1q32.1 01q32.1 AVPR3 Arginine vasopressin and oxytocin receptors 259 1995-07-06 2016-10-05 553 ENSG00000198049 OTTHUMG00000184377 uc001hds.3 D31833 NM_000707 CCDS73015 P47901 "7929452|8586456" MGI:1347010 RGD:61886 AVPR1B 600264 objectId:367 +HGNC:897 AVPR2 arginine vasopressin receptor 2 protein-coding gene gene with protein product Approved Xq28 Xq28 V2R nephrogenic diabetes insipidus "DIR3|DIR" Arginine vasopressin and oxytocin receptors 259 1992-02-28 2008-08-01 2016-10-12 554 ENSG00000126895 OTTHUMG00000024227 uc004fjh.5 Z11687 XM_006724828 "CCDS14735|CCDS55539" P30518 1324225 MGI:88123 RGD:2186 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AVPR2|LRG_716|http://www.lrg-sequence.org/LRG/LRG_716" AVPR2 300538 118947 objectId:368 +HGNC:900 AVRR entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:899 AVR entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:12721 AVSD1 atrioventricular septal defect 1 phenotype phenotype only Approved 1p31-p21 01p31-p21 "AVSD|AVCD" VSD1 1994-01-05 2001-09-27 2002-04-16 7446 9002679 606215 +HGNC:23252 AWAT1 acyl-CoA wax alcohol acyltransferase 1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 DGAT2L3 diacylglycerol O-acyltransferase 2-like 3 Diacylglycerol O-acyltransferase 2 family 1235 2004-05-28 2009-02-23 2009-02-23 2015-08-24 158833 ENSG00000204195 OTTHUMG00000021773 uc004dxy.4 BC039181 NM_001013579 CCDS35321 Q58HT5 "14970677|15671038" MGI:3588200 RGD:1587163 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DGAT2L3 AWAT1 300924 +HGNC:23251 AWAT2 acyl-CoA wax alcohol acyltransferase 2 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 MFAT multifunctional O-acyltransferase DGAT2L4 diacylglycerol O-acyltransferase 2-like 4 Diacylglycerol O-acyltransferase 2 family 1235 2004-05-28 2009-02-23 2009-02-23 2015-08-24 158835 ENSG00000147160 OTTHUMG00000021763 uc004dxt.1 BC063698 NM_001002254 CCDS35320 Q6E213 "14970677|16106050|15671038" MGI:3045345 RGD:1565111 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=AWAT2 AWAT2 300925 +HGNC:26564 AXDND1 axonemal dynein light chain domain containing 1 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 FLJ32940 C1orf125 chromosome 1 open reading frame 125 2005-06-23 2011-02-18 2011-02-18 2015-03-02 126859 ENSG00000162779 OTTHUMG00000035266 uc001gmo.3 BX647935 NM_144696 CCDS30948 Q5T1B0 14702039 MGI:1924602 RGD:1566124 AXDND1 +HGNC:903 AXIN1 axin 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 PPP1R49 protein phosphatase 1, regulatory subunit 49 Protein phosphatase 1 regulatory subunits 694 1998-09-17 2015-08-24 8312 ENSG00000103126 OTTHUMG00000064930 uc002cgp.3 AF009674 XM_011522682 "CCDS10405|CCDS10406" O15169 9230313 MGI:1096327 RGD:620859 AXIN1 603816 +HGNC:904 AXIN2 axin 2 protein-coding gene gene with protein product Approved 17q24.1 17q24.1 "MGC126582|DKFZp781B0869" "conductin|axil" 1998-09-17 2008-08-01 2016-10-12 8313 ENSG00000168646 OTTHUMG00000179353 uc002jfi.4 AF078165 NM_004655 CCDS11662 Q9Y2T1 10049590 MGI:1270862 RGD:69259 LRG_296|http://www.lrg-sequence.org/LRG/LRG_296 AXIN2 604025 118954 +HGNC:905 AXL AXL receptor tyrosine kinase protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "UFO|JTK11|Tyro7|ARK" "Receptor Tyrosine Kinases|Fibronectin type III domain containing|V-set domain containing|Immunoglobulin like domain containing" "321|555|590|594" 1992-09-15 2016-10-05 558 ENSG00000167601 OTTHUMG00000182727 uc010ehj.5 M76125 NM_021913 "CCDS12574|CCDS12575|CCDS62677" P30530 1656220 MGI:1347244 RGD:620028 AXL 109135 objectId:1835 2.7.10.1 +HGNC:908 AZF1 azoospermia factor 1 phenotype phenotype only Approved Yq11 Yq11 AZFa AZF 2009-03-17 2007-07-24 2007-07-24 2013-11-15 560 19246359 +HGNC:909 AZF2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-27 +HGNC:910 AZGP1 alpha-2-glycoprotein 1, zinc-binding protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "ZA2G|ZAG" alpha-2-glycoprotein 1, zinc C1-set domain containing 591 1991-09-12 2006-11-07 2014-11-19 563 ENSG00000160862 OTTHUMG00000023066 uc003ush.4 BC005306 NM_001185 CCDS5680 P25311 2049092 MGI:103163 RGD:2187 AZGP1 194460 +HGNC:911 AZGP1P1 alpha-2-glycoprotein 1, zinc-binding pseudogene 1 pseudogene pseudogene Approved 7q22.1 07q22.1 alpha-2-glycoprotein 1, zinc pseudogene 1 1993-04-22 2006-11-07 2010-04-16 646282 ENSG00000214313 OTTHUMG00000156513 AW995302 NR_036679 "8241150|8307568" +HGNC:912 AZGP1P2 alpha-2-glycoprotein 1, zinc-binding pseudogene 2 pseudogene pseudogene Approved 7q22.1 07q22.1 alpha-2-glycoprotein 1, zinc pseudogene 2 1994-09-08 2006-11-07 2010-09-21 401393 ENSG00000214252 OTTHUMG00000157108 NG_008494 "8241150|8307568" +HGNC:24002 AZI2 5-azacytidine induced 2 protein-coding gene gene with protein product Approved 3p24.1 03p24.1 "NAP1|FLJ21939|AZ2" 2004-07-15 2016-10-05 64343 ENSG00000163512 OTTHUMG00000130573 uc003ceb.5 AC093142 NM_203326 "CCDS2647|CCDS46782|CCDS46783" Q9H6S1 10580148 MGI:1351332 RGD:1310530 AZI2 609916 +HGNC:16432 AZIN1 antizyme inhibitor 1 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "OAZI|ODC1L" ornithine decarboxylase 1-like OAZIN ornithine decarboxylase antizyme inhibitor 2001-08-21 2005-03-21 2005-03-21 2015-08-24 51582 ENSG00000155096 OTTHUMG00000164766 uc003yky.4 AAC25391 XM_017013563 CCDS6295 O14977 "9349715|9110174" MGI:1859169 RGD:61934 AZIN1 607909 +HGNC:51558 AZIN1-AS1 AZIN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q22.3 08q22.3 2015-03-05 2015-03-05 100506753 ENSG00000253320 OTTHUMG00000164825 NR_126338 +HGNC:29957 AZIN2 antizyme inhibitor 2 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "ODC-p|ODC1L|KIAA1945|ODCp" ornithine decarboxylase like ADC arginine decarboxylase 2005-06-06 2014-06-10 2014-06-10 2014-11-18 113451 ENSG00000142920 OTTHUMG00000004130 AY050635 XM_017000167 "CCDS375|CCDS76138" Q96A70 "11587527|14738999|17900240" MGI:2442093 RGD:1564776 608353 objectId:1270 4.1.1.19 +HGNC:913 AZU1 azurocidin 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "AZU|CAP37|AZAMP|HBP|NAZC|HUMAZUR" "cationic antimicrobial protein 37|heparin-binding protein|neutrophil azurocidin" 1992-10-21 2008-08-01 2014-11-18 566 ENSG00000172232 OTTHUMG00000187023 uc002lpz.2 X58794 NM_001700 CCDS12044 P20160 1919011 AZU1 162815 S01.971 +HGNC:49098 AZU1P1 azurocidin 1 pseudogene 1 pseudogene pseudogene Approved 13q14.11 13q14.11 2013-09-02 2013-09-02 106480244 ENSG00000270444 OTTHUMG00000184719 NG_043843 PGOHUM00000248374 +HGNC:914 B2M beta-2-microglobulin protein-coding gene gene with protein product Approved 15q21.1 15q21.1 C1-set domain containing 591 2001-06-22 2015-01-28 567 ENSG00000166710 OTTHUMG00000131247 uc001zuc.4 AB021288 NM_004048 CCDS10113 P61769 MGI:88127 RGD:2189 B2M 109700 317771 +HGNC:915 B2MR beta-2-microglobulin regulator other unknown Approved 15q13-q15 15q13-q15 2001-06-22 2013-01-25 568 7061176 109710 +HGNC:918 B3GALNT1 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding gene gene with protein product Approved 3q26.1 03q26.1 "beta3Gal-T3|galT3|P1|GLOB" "globoside synthase|P antigen synthase" B3GALT3 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 3 (Globoside blood group)|UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1 (Globoside blood group)" "Beta 3-glycosyltransferases|Blood group antigens" "426|454" 1998-12-01 2006-05-09 2006-06-14 2016-10-12 8706 ENSG00000169255 OTTHUMG00000159064 uc003fdz.4 Y15062 NM_033167 CCDS3193 O75752 "9582303|10993897" MGI:1349405 RGD:1304797 LRG_820|http://www.lrg-sequence.org/LRG/LRG_820 B3GALNT1 603094 2.4.1.79 +HGNC:51302 B3GALNT1P1 beta-1,3-N-acetylgalactosaminyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 2p13.3 02p13.3 2014-09-25 2014-09-25 100128857 ENSG00000229948 OTTHUMG00000152687 NG_030146 PGOHUM00000298465 +HGNC:28596 B3GALNT2 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding gene gene with protein product Approved 1q42.3 01q42.3 MGC39558 UDP-GalNAc:betaGlcNAc beta-1,3-galactosaminyltransferase, polypeptide 2 Beta 3-glycosyltransferases 426 2005-02-10 2006-06-14 2014-11-19 148789 ENSG00000162885 OTTHUMG00000040468 uc001hxc.4 BC029564 NM_152490 "CCDS1606|CCDS60453" Q8NCR0 14724282 MGI:2145517 RGD:1306946 B3GALNT2 610194 330631 +HGNC:51315 B3GALNT2P1 beta-1,3-N-acetylgalactosaminyltransferase 2 pseudogene 1 pseudogene pseudogene Approved 6q22.33 06q22.33 2014-10-01 2014-10-01 100130402 ENSG00000218725 OTTHUMG00000015551 NG_011850 PGOHUM00000301945 +HGNC:916 B3GALT1 beta-1,3-galactosyltransferase 1 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 beta3Gal-T1 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 1" Beta 3-glycosyltransferases 426 1998-12-01 2016-04-26 2016-04-26 8708 ENSG00000172318 OTTHUMG00000132163 uc061pgb.1 E07739 NM_020981 CCDS2227 Q9Y5Z6 9582303 MGI:1349403 RGD:1311898 B3GALT1 603093 +HGNC:917 B3GALT2 beta-1,3-galactosyltransferase 2 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 beta3Gal-T2 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 2" Beta 3-glycosyltransferases 426 1998-12-01 2016-04-26 2016-10-05 8707 ENSG00000162630 OTTHUMG00000035687 uc001gtc.5 Y15060 NM_003783 CCDS1383 O43825 "9582303|9417100" MGI:1349461 RGD:1586615 B3GALT2 603018 +HGNC:919 B3GALT4 beta-1,3-galactosyltransferase 4 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "beta3Gal-T4|GalT4" "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 4" Beta 3-glycosyltransferases 426 1998-12-01 2016-04-26 2016-10-05 8705 ENSG00000235863 OTTHUMG00000031100 uc011jag.2 Y15061 NM_003782 CCDS34425 O96024 9582303 MGI:1859517 RGD:620328 B3GALT4 603095 +HGNC:920 B3GALT5 beta-1,3-galactosyltransferase 5 protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "beta3Gal-T5|B3GalT-V|GLCT5|B3T5" "homolog of C. elegans Bt toxin resistance gene bre-5|GlcNAc-beta-1,3-galactosyltransferase 5" "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5|UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase 5" Beta 3-glycosyltransferases 426 1999-06-09 2016-04-26 2016-10-05 10317 ENSG00000183778 OTTHUMG00000086725 uc002yyb.3 AB020337 NM_033170 "CCDS13667|CCDS74795" Q9Y2C3 10212226 MGI:2136878 RGD:1306727 B3GALT5 604066 +HGNC:16424 B3GALT5-AS1 B3GALT5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 C21orf88 chromosome 21 open reading frame 88 2001-08-24 2014-10-01 2014-10-01 2014-11-19 114041 ENSG00000184809 OTTHUMG00000086722 AF426266 NR_026542 P59052 12036297 +HGNC:17978 B3GALT6 beta-1,3-galactosyltransferase 6 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 beta3GalT6 beta-1,3-galactosyltransferase-6 "UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 6|UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 6|UDP-Gal:betaGal beta 1,3-galactosyltransferase 6" Beta 3-glycosyltransferases 426 2002-01-09 2016-04-26 2016-04-26 126792 ENSG00000176022 OTTHUMG00000001813 uc001adk.4 AY050570 NM_080605 CCDS13 Q96L58 11551958 MGI:2152819 RGD:1309558 B3GALT6 615291 356939 +HGNC:921 B3GAT1 beta-1,3-glucuronyltransferase 1 protein-coding gene gene with protein product Approved 11q25 11q25 "GlcAT-P|HNK-1|NK-1" "galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1|glucuronosyltransferase P" "CD57|LEU7" CD57 antigen "Beta-1,3-glucuronyltransferases|CD molecules" "423|471" 2000-01-07 2014-07-08 2014-11-19 27087 ENSG00000109956 OTTHUMG00000167180 uc001qhq.4 AB029396 NM_018644 CCDS8500 Q9P2W7 MGI:1924148 RGD:70880 B3GAT1 151290 CD57 2.4.1.135 +HGNC:922 B3GAT2 beta-1,3-glucuronyltransferase 2 protein-coding gene gene with protein product Approved 6q13 06q13 GlcAT-S "glucuronosyltransferase S|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2" Beta-1,3-glucuronyltransferases 423 2000-01-07 2014-07-08 2016-10-05 135152 ENSG00000112309 OTTHUMG00000014997 uc003pfv.4 AB075843 NM_080742 CCDS4974 Q9NPZ5 12383500 MGI:2389490 RGD:620903 B3GAT2 607497 2.4.1.135 +HGNC:923 B3GAT3 beta-1,3-glucuronyltransferase 3 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 GlcAT-I "glucuronosyltransferase I|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3" beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) Beta-1,3-glucuronyltransferases 423 2000-01-07 2014-07-08 2016-10-05 26229 ENSG00000149541 OTTHUMG00000167685 uc001ntw.3 AB009598 NM_012200 "CCDS8025|CCDS76417|CCDS76418" O94766 9506957 MGI:1919977 RGD:1311968 B3GAT3 606374 284146 2.4.1.135 +HGNC:35243 B3GAT3P1 beta-1,3-glucuronyltransferase 3 pseudogene 1 pseudogene pseudogene Approved 3q25.33 03q25.33 PSIGLCAT-I B3GAT3P beta-1,3-glucuronyltransferase 3 pseudogene 2008-10-30 2010-01-19 2010-01-19 2016-10-05 402146 ENSG00000244009 OTTHUMG00000159032 AB049116 NG_005351 11535117 PGOHUM00000238247 +HGNC:20207 B3GLCT beta 3-glucosyltransferase protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "B3GTL|B3Glc-T" beta-1,3-glucosyltransferase B3GALTL beta 1,3-galactosyltransferase-like Beta 3-glycosyltransferases 426 2006-03-23 2015-06-04 2015-06-04 2016-02-01 145173 ENSG00000187676 OTTHUMG00000016688 AB101481 NM_194318 CCDS9341 Q6Y288 "12943678|16899492|17032646" MGI:2685903 RGD:1588723 "B3GALTL - Peters' Plus syndrome|http://www.LOVD.nl/B3GALTL|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=B3GALTL" 610308 118958 +HGNC:15629 B3GNT2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding gene gene with protein product Approved 2p15 02p15 "B3GNT-2|BETA3GNT|B3GN-T2|B3GN-T1" B3GNT1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 Beta 3-glycosyltransferases 426 2001-05-14 2006-04-12 2006-04-12 2014-11-19 10678 ENSG00000170340 OTTHUMG00000129444 uc002sbs.4 AB049584 NM_006577 CCDS1870 Q9NY97 "9892646|11042166" MGI:1889505 RGD:1310077 B3GNT2 605581 +HGNC:51316 B3GNT2P1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 pseudogene 1 pseudogene pseudogene Approved Xq22.1 Xq22.1 2014-10-01 2014-10-01 100422469 ENSG00000229946 OTTHUMG00000021997 NG_026739 +HGNC:13528 B3GNT3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "B3GN-T3|beta3Gn-T3|HP10328|B3GNT-3" "putative type II membrane protein|beta-1,3-N-acetylglucosaminyltransferase bGnT-3|transmembrane protein 3" TMEM3 Beta 3-glycosyltransferases 426 2000-09-20 2016-10-05 10331 ENSG00000179913 OTTHUMG00000183490 uc002nhl.2 AB015630 NM_014256 CCDS12364 Q9Y2A9 "10072769|11042166" MGI:2152535 RGD:1305151 B3GNT3 605863 +HGNC:15683 B3GNT4 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "B3GN-T4|beta3Gn-T4" Beta 3-glycosyltransferases 426 2001-05-14 2016-10-05 79369 ENSG00000176383 OTTHUMG00000168917 uc001ubx.4 AB049586 NM_030765 "CCDS9227|CCDS81751" Q9C0J1 11042166 MGI:2680208 RGD:1309612 B3GNT4 605864 +HGNC:15684 B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "B3GN-T5|beta3Gn-T5" lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase Beta 3-glycosyltransferases 426 2001-05-14 2016-10-05 84002 ENSG00000176597 OTTHUMG00000158436 uc003flk.3 AB045278 NM_032047 CCDS3244 Q9BYG0 11283017 MGI:2137302 RGD:70955 B3GNT5 615333 2.4.1.206 +HGNC:24141 B3GNT6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 B3Gn-T6 core 3 synthase Beta 3-glycosyltransferases 426 2006-04-12 2015-02-23 2016-10-05 192134 ENSG00000198488 OTTHUMG00000181633 uc031xwa.2 AB073740 NM_138706 CCDS53681 Q6ZMB0 11821425 MGI:3039603 RGD:1310926 B3GNT6 615315 +HGNC:18811 B3GNT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 beta3GnT7 Beta 3-glycosyltransferases 426 2002-06-20 2016-10-05 93010 ENSG00000156966 OTTHUMG00000153880 uc002vrs.4 AK000770 NM_145236 CCDS46540 Q8NFL0 12061784 MGI:2384394 RGD:1310580 B3GNT7 615313 +HGNC:24139 B3GNT8 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "BGALT15|beta3Gn-T8" B3GALT7 UDP-Gal:betaGal beta 1,3-galactosyltransferase polypeptide 7 Beta 3-glycosyltransferases 426 2004-04-20 2006-03-14 2006-03-14 2016-10-05 374907 ENSG00000177191 OTTHUMG00000182749 uc002oqs.3 AY277592 NM_198540 CCDS12582 Q7Z7M8 15486459 MGI:2385269 RGD:1305374 B3GNT8 615357 +HGNC:28714 B3GNT9 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 MGC4655 Beta 3-glycosyltransferases 426 2008-08-18 2015-08-24 84752 ENSG00000237172 OTTHUMG00000173315 uc002erf.4 BC012191 NM_033309 CCDS45509 Q6UX72 12975309 MGI:2142841 RGD:1310170 B3GNT9 +HGNC:21727 B3GNTL1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 B3GNT8 Glycosyltransferase family 2 428 2003-07-17 2004-01-14 2004-01-13 2014-11-19 146712 ENSG00000175711 OTTHUMG00000177788 uc002kgg.1 AY634364 NM_001009905 "CCDS32778|CCDS82232" Q67FW5 MGI:2441705 RGD:1359497 B3GNTL1 615337 +HGNC:51317 B3GNTL1P1 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 pseudogene 1 pseudogene pseudogene Approved 5q11.2 05q11.2 2014-10-01 2014-10-01 106481968 ENSG00000251237 OTTHUMG00000162172 NG_045397 PGOHUM00000300948 +HGNC:51318 B3GNTL1P2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 pseudogene 2 pseudogene pseudogene Approved 6p12.3 06p12.3 2014-10-01 2014-10-01 106480419 ENSG00000271328 OTTHUMG00000184538 NG_043195 PGOHUM00000301806 +HGNC:4117 B4GALNT1 beta-1,4-N-acetyl-galactosaminyltransferase 1 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 beta1-4GalNAc-T GD2 synthase, GM2 synthase "GALGT|SPG26" "UDP-N-acetyl-alpha-D-galactosamine:(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase (GalNAc-T)|UDP-Gal:betaGlcNAc beta-1,4-N-acetylgalactosaminyltransferase transferase 1|spastic paraplegia 26" Beta 4-glycosyltransferases 425 1998-01-29 2006-01-08 2016-02-22 2016-02-22 2583 ENSG00000135454 OTTHUMG00000170190 uc001spg.3 M83651 NM_001478 "CCDS8950|CCDS61170|CCDS61171" Q00973 "1601877|23746551" MGI:1342057 RGD:620490 B4GALNT1 601873 358571 2.4.1.92 +HGNC:24136 B4GALNT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "Sda|Cad" GALGT2 UDP-GalNAc:Neu5Acalpha2-3Galbeta-R beta1,4-N-acetylgalactosaminyltransferase Beta 4-glycosyltransferases 425 2004-02-20 2006-01-08 2016-02-22 2016-10-05 124872 ENSG00000167080 OTTHUMG00000161307 uc002ion.3 AJ517770 NM_153446 "CCDS11544|CCDS54139|CCDS54140" Q8NHY0 "8782649|12678917" MGI:1342058 RGD:1592405 B4GALNT2 111730 2.4.1.- +HGNC:51319 B4GALNT2P1 beta-1,4-N-acetyl-galactosaminyltransferase 2 pseudogene 1 pseudogene pseudogene Approved 17q21.32 17q21.32 2014-10-01 2016-02-22 2016-02-22 106481717 ENSG00000248883 OTTHUMG00000161236 NG_043355 PGOHUM00000294471 +HGNC:24137 B4GALNT3 beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "B4GalNac-T3|FLJ16224|FLJ40362" Beta 4-glycosyltransferases 425 2006-01-08 2016-02-22 2016-02-22 283358 ENSG00000139044 OTTHUMG00000129283 uc001qii.2 AB089940 NM_173593 CCDS8504 Q6L9W6 12966086 MGI:3041155 RGD:1561056 B4GALNT3 612220 2.4.1.- +HGNC:26315 B4GALNT4 beta-1,4-N-acetyl-galactosaminyltransferase 4 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "FLJ25045|NGalNAc-T1" N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N- acetylgalactosaminyltransferase Beta 4-glycosyltransferases 425 2006-01-08 2016-02-22 2016-02-22 338707 ENSG00000182272 OTTHUMG00000119075 uc001lpb.4 AB089939 NM_178537 CCDS7694 Q76KP1 15044014 MGI:2652891 RGD:1310052 B4GALNT4 "2.4.1.244|2.4.1.92" +HGNC:924 B4GALT1 beta-1,4-galactosyltransferase 1 protein-coding gene gene with protein product Approved 9p21.1 09p21.1 beta4Gal-T1 GGTB2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1 Beta 4-glycosyltransferases 425 2001-06-22 2016-03-15 2016-10-05 2683 ENSG00000086062 OTTHUMG00000019764 uc003zsg.3 X14085 NM_001497 CCDS6535 P15291 9597550 MGI:95705 RGD:620900 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ B4GALT1 137060 118962 "2.4.1.133|2.4.1.38" +HGNC:49910 B4GALT1-AS1 B4GALT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p21.1 09p21.1 Long non-coding RNAs 788 2014-03-21 2015-09-23 101929639 ENSG00000233554 OTTHUMG00000019763 NR_108108 26315939 +HGNC:925 B4GALT2 beta-1,4-galactosyltransferase 2 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 beta4Gal-T2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 Beta 4-glycosyltransferases 425 1998-12-02 2016-03-15 2016-10-05 8704 ENSG00000117411 OTTHUMG00000008296 uc001clg.4 AF038660 NM_003780 "CCDS506|CCDS55596" O60909 "9405390|9597550" MGI:1858493 RGD:1305358 B4GALT2 604013 2.4.1.38 +HGNC:926 B4GALT3 beta-1,4-galactosyltransferase 3 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 beta4Gal-T3 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3 Beta 4-glycosyltransferases 425 1998-12-02 2016-03-15 2016-03-15 8703 ENSG00000158850 OTTHUMG00000034348 uc001fyr.3 BC006099 NM_003779 CCDS1222 O60512 "9405390|9597550" MGI:1928767 RGD:1359221 B4GALT3 604014 +HGNC:927 B4GALT4 beta-1,4-galactosyltransferase 4 protein-coding gene gene with protein product Approved 3q13.32 03q13.32 beta4Gal-T4 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 Beta 4-glycosyltransferases 425 1998-12-02 2016-03-15 2016-10-05 8702 ENSG00000121578 OTTHUMG00000159358 uc003eci.4 AF022367 NM_003778 CCDS2986 O60513 "9597550|9792633" MGI:1928387 RGD:1307880 B4GALT4 604015 2.4.1.275 +HGNC:40090 B4GALT4-AS1 B4GALT4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.32 03q13.32 B4GALT4 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2016-10-05 100874201 ENSG00000240254 OTTHUMG00000159385 uc062mtc.1 NR_046574 +HGNC:928 B4GALT5 beta-1,4-galactosyltransferase 5 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 beta4GalT-V beta4-GalT IV UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5 Beta 4-glycosyltransferases 425 1999-03-15 2016-03-15 2016-10-05 9334 ENSG00000158470 OTTHUMG00000033086 uc002xuu.5 AB004550 NM_004776 CCDS13420 O43286 "9597550|9435216" MGI:1927169 RGD:1310062 B4GALT5 604016 "2.4.1.38|2.4.1.90" +HGNC:929 B4GALT6 beta-1,4-galactosyltransferase 6 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 beta4GalT-VI UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 Beta 4-glycosyltransferases 425 1999-03-15 2016-03-15 2016-10-05 9331 ENSG00000118276 OTTHUMG00000131980 uc002kwz.5 AF038664 NM_004775 "CCDS11900|CCDS82245" Q9UBX8 "9597550|12180132" MGI:1928380 RGD:71046 B4GALT6 604017 +HGNC:930 B4GALT7 beta-1,4-galactosyltransferase 7 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "XGALT-1|beta4Gal-T7" galactosyltransferase I xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 Beta 4-glycosyltransferases 425 1999-12-07 2016-03-15 2016-10-05 11285 ENSG00000027847 OTTHUMG00000130851 uc003mhy.4 AB028600 NM_007255 CCDS4429 Q9UBV7 "10438455|10473568|15211654|24052259" MGI:2384987 RGD:1309214 B4GALT7 604327 118966 2.4.1.133 +HGNC:15685 B4GAT1 beta-1,4-glucuronyltransferase 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "iGNT|iGAT|iGnT|BETA3GNTI|B3GN-T1" N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase "B3GNT6|B3GNT1" "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6|UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1" 2001-05-22 2014-12-17 2014-12-17 2016-05-26 11041 ENSG00000174684 OTTHUMG00000167082 AF029893 NM_006876 CCDS8136 O43505 "9405606|25279697|25279699" MGI:1919680 RGD:1309541 605517 332043 2.4.1.- +HGNC:24123 B9D1 B9 domain containing 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "B9|EPPB9|MKS9" endothelial precursor protein B9 B9 protein domain 1 2007-08-21 2016-05-16 2016-10-12 27077 ENSG00000108641 OTTHUMG00000059586 uc002gvk.5 BC002944 NM_015681 "CCDS11205|CCDS58528|CCDS82086|CCDS82087|CCDS82088|CCDS82089" Q9UPM9 21493627 MGI:1351471 RGD:1305522 LRG_686|http://www.lrg-sequence.org/LRG/LRG_686 B9D1 614144 270354 +HGNC:28636 B9D2 B9 protein domain 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "MGC4093|MKS10" 2007-08-21 2014-11-19 80776 ENSG00000123810 OTTHUMG00000182758 uc002oqj.3 BC004157 NM_030578 CCDS12579 Q9BPU9 21763481 MGI:2387643 RGD:1566122 B9D2 611951 279753 +HGNC:14333 BAALC brain and acute leukemia, cytoplasmic protein-coding gene gene with protein product Approved 8q22.3 08q22.3 2001-01-26 2016-06-24 79870 ENSG00000164929 OTTHUMG00000164782 uc003yld.4 AF363578 XR_001745601 "CCDS6297|CCDS47906" Q8WXS3 "11707601|26050649" MGI:1928704 RGD:628703 BAALC 606602 +HGNC:50461 BAALC-AS1 BAALC antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q22.3 08q22.3 2014-04-30 2014-04-30 100499183 ENSG00000247081 OTTHUMG00000164798 NR_109954 +HGNC:28595 BAALC-AS2 BAALC antisense RNA 2 non-coding RNA RNA, long non-coding Approved 8q22.3 08q22.3 MGC39526 "C8orf56|BAALCOS" "chromosome 8 open reading frame 56|BAALC opposite strand" 2005-09-02 2014-10-03 2014-10-03 2014-10-03 157556 ENSG00000236939 OTTHUMG00000164781 BC029562 NR_027071 P0C853 12477932 +HGNC:932 BAAT bile acid-CoA:amino acid N-acyltransferase protein-coding gene gene with protein product Approved 9q31.1 09q31.1 BAT glycine N-choloyltransferase "bile acid Coenzyme A:amino acid N-acyltransferase (glycine N-choloyltransferase)|bile acid CoA: amino acid N-acyltransferase (glycine N-choloyltransferase)" 1996-03-13 2015-11-11 2016-10-05 570 ENSG00000136881 OTTHUMG00000020377 uc010mtd.3 L34081 NM_001701 CCDS6752 Q14032 MGI:106642 RGD:2190 BAAT 602938 244706 S09.A50 2.3.1.65 +HGNC:34504 BAATP1 bile acid-CoA: amino acid N-acyltransferase pseudogene 1 pseudogene pseudogene Approved 9q31.1 09q31.1 ACNATP acid-CoA: amino acid N-acyltransferase, pseudogene 2010-09-29 2015-11-11 2016-10-05 347275 ENSG00000227411 OTTHUMG00000020374 NG_023464 "17116739|18538142" PGOHUM00000236286 +HGNC:25008 BABAM1 BRISC and BRCA1 A complex member 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FLJ20571|HSPC142|NBA1|MERIT40" "Mediator of Rap80 Interactions and Targeting 40 kD|new component of the BRCA1 A complex" C19orf62 chromosome 19 open reading frame 62 BRCA1 A complex 1328 2007-05-03 2011-01-31 2011-02-21 2014-11-18 29086 ENSG00000105393 OTTHUMG00000182755 uc002nfu.5 AK000578 NM_014173 "CCDS46012|CCDS74310" Q9NWV8 11042152 MGI:1915501 RGD:1359516 BABAM1 612766 +HGNC:933 BACE1 beta-secretase 1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 BACE "beta-site APP-cleaving enzyme|beta-site APP-cleaving enzyme 1" 1999-10-29 2004-04-02 2016-05-16 2016-10-05 23621 ENSG00000186318 OTTHUMG00000160636 uc001pqz.4 AF190725 NM_012104 "CCDS8383|CCDS44739|CCDS44740|CCDS44741|CCDS55787|CCDS55786" P56817 10531052 MGI:1346542 RGD:2191 BACE1 604252 A01.004 objectId:2330 +HGNC:37125 BACE1-AS BACE1 antisense RNA non-coding RNA RNA, long non-coding Approved 11q23.3 11q23.3 "FJ573250|NCRNA00177|BACE1-AS1" non-protein coding RNA 177 BACE1AS BACE1 antisense RNA (non-protein coding) Long non-coding RNAs 788 2009-07-15 2010-11-03 2012-08-15 2014-10-22 100379571 ENSG00000278768 OTTHUMG00000188154 uc058htm.1 NR_037803 "18587408|21785702" 614263 BACE1AS +HGNC:934 BACE2 beta-site APP-cleaving enzyme 2 protein-coding gene gene with protein product Approved 21q22.2-q22.3 21q22.2-q22.3 "CEAP1|DRAP|ALP56" memapsin 1 AEPLC 2000-05-23 2016-10-11 25825 ENSG00000182240 OTTHUMG00000086742 uc002yyw.5 AF117892 XM_017028314 "CCDS13668|CCDS13669|CCDS13670" Q9Y5Z0 "10965118|10830953" MGI:1860440 RGD:1303241 BACE2 605668 A01.041 objectId:2331 3.4.23.45 +HGNC:16024 BACE2-IT1 BACE2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 PRED43 "C21orf75|NCRNA00228" "chromosome 21 open reading frame 75|non-protein coding RNA 228|BACE2 intronic transcript 1 (non-protein coding)" 2002-11-26 2011-08-11 2015-02-25 2015-02-25 282569 ENSG00000224388 OTTHUMG00000086745 uc062agy.1 +HGNC:935 BACH1 BTB domain and CNC homolog 1 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "BACH-1|BTBD24" BTB and CNC homology 1, basic leucine zipper transcription factor 1 "Basic leucine zipper proteins|BTB domain containing" "506|861" 1998-05-14 2016-01-28 2016-10-05 571 ENSG00000156273 OTTHUMG00000078878 uc061zlj.1 AF026200 NM_206866 CCDS13585 O14867 "9544839|9479503" MGI:894680 RGD:1306693 BACH1 602751 +HGNC:40008 BACH1-AS1 BACH1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 BACH1 antisense RNA 1 (non-protein coding) 2011-04-28 2012-08-15 2014-11-19 106478962 ENSG00000232118 OTTHUMG00000081874 uc061zln.1 +HGNC:40006 BACH1-IT1 BACH1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 BACH1 intronic transcript 1 (non-protein coding) 2011-04-28 2015-02-25 2015-02-25 ENSG00000248476 OTTHUMG00000078881 uc061zlk.1 AF317902 +HGNC:40007 BACH1-IT2 BACH1 intronic transcript 2 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 BACH1 intronic transcript 2 (non-protein coding) 2011-04-28 2015-02-25 2015-02-25 100874322 ENSG00000228817 OTTHUMG00000078880 uc061zlq.1 NR_046564 +HGNC:16455 BACH1-IT3 BACH1 intronic transcript 3 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 C21orf8 "chromosome 21 open reading frame 8|BACH1 intronic transcript 3 (non-protein coding)" 2001-08-24 2008-09-04 2015-02-25 2015-02-25 54147 ENSG00000234293 OTTHUMG00000078874 uc061zlr.1 BX100223 +HGNC:14078 BACH2 BTB domain and CNC homolog 2 protein-coding gene gene with protein product Approved 6q15 06q15 BTBD25 BTB and CNC homology 1, basic leucine zipper transcription factor 2 "Basic leucine zipper proteins|BTB domain containing" "506|861" 2001-04-27 2016-01-28 2016-01-28 60468 ENSG00000112182 OTTHUMG00000015216 uc003pnw.4 AL121787 NM_021813 CCDS5026 Q9BYV9 "10949928|12829606" MGI:894679 RGD:1562865 BACH2 605394 +HGNC:936 BAD BCL2 associated agonist of cell death protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "BCL2L8|BBC2" BCL2 homology region 3 (BH3) only 1277 1997-10-16 2015-11-24 2015-11-24 572 ENSG00000002330 OTTHUMG00000134302 uc001nzd.4 AF021792 NM_032989 CCDS8065 Q92934 8929532 MGI:1096330 RGD:620103 BAD 603167 +HGNC:937 BAG1 BCL2 associated athanogene 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 BCL2 associated athanogene BCL2 associated athanogene family 1139 1996-06-19 2015-11-16 2016-10-05 573 ENSG00000107262 OTTHUMG00000019766 uc064soo.1 AF022224 NM_004323 "CCDS35004|CCDS55301" Q99933 7834747 MGI:108047 RGD:1305203 BAG1 601497 +HGNC:938 BAG2 BCL2 associated athanogene 2 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 BCL2 associated athanogene family 1139 1999-04-23 2015-11-16 2016-10-05 9532 ENSG00000112208 OTTHUMG00000014919 uc003pdr.4 AF095192 XM_005249490 CCDS4961 O95816 9873016 MGI:1891254 RGD:1585173 BAG2 603882 +HGNC:939 BAG3 BCL2 associated athanogene 3 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 BCL2 associated athanogene family 1139 1999-04-23 2015-11-16 2016-10-12 9531 ENSG00000151929 OTTHUMG00000019155 uc001lem.4 AF095193 NM_004281 CCDS7615 O95817 "9873016|18094623" MGI:1352493 RGD:1307794 LRG_742|http://www.lrg-sequence.org/LRG/LRG_742 BAG3 603883 201494 +HGNC:940 BAG4 BCL2 associated athanogene 4 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 SODD silencer of death domains BCL2 associated athanogene family 1139 1999-04-23 2015-11-16 2015-11-16 9530 ENSG00000156735 OTTHUMG00000164064 uc003xky.3 AF095194 NM_004874 "CCDS6104|CCDS56533" O95429 "9873016|9915703" MGI:1914634 RGD:1560875 BAG4 603884 +HGNC:941 BAG5 BCL2 associated athanogene 5 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 BCL2 associated athanogene family 1139 1999-04-23 2015-11-16 2016-10-05 9529 ENSG00000166170 OTTHUMG00000171763 uc001ynj.2 AF095195 NM_001015048 "CCDS9982|CCDS41995" Q9UL15 "9873016|15603737" MGI:1917619 RGD:1310847 BAG5 603885 +HGNC:13919 BAG6 BCL2 associated athanogene 6 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G3|D6S52E" BAT3 HLA-B associated transcript 3 BCL2 associated athanogene family 1139 2001-07-13 2010-12-09 2015-11-16 2016-10-05 7917 ENSG00000204463 OTTHUMG00000031171 uc063yvn.1 M31294 NM_080703 "CCDS4709|CCDS47403|CCDS56414|CCDS56415" P46379 2156268 MGI:1919439 RGD:71064 BAG6 142590 +HGNC:942 BAGE B melanoma antigen protein-coding gene gene with protein product Approved 21p11.1 not on reference assembly 21p11.1 not on reference assembly "CT2.1|BAGE1" cancer/testis antigen family 2, member 1 1995-03-30 2015-02-09 574 U19180 NM_001187 Q13072 7895173 605167 +HGNC:15723 BAGE2 B melanoma antigen family member 2 other unknown Approved 21p11.2 21p11.2 CT2.2 cancer/testis antigen family 2, member 2 B melanoma antigen family, member 2 2001-06-01 2015-11-18 2015-11-18 85319 ENSG00000187172 OTTHUMG00000074128 AF218570 NM_182482 Q86Y30 12461691 +HGNC:15728 BAGE3 B melanoma antigen family member 3 protein-coding gene gene with protein product Approved 21p11.2 21p11.2 CT2.3 cancer/testis antigen family 2, member 3 B melanoma antigen family, member 3 2001-06-01 2015-11-18 2015-11-18 85318 AF339514 NM_182481 Q86Y29 12461691 +HGNC:15730 BAGE4 B melanoma antigen family member 4 protein-coding gene gene with protein product Approved 21p11.1 21p11.1 CT2.4 cancer/testis antigen family 2, member 4 MLL3P "MLL3 pseudogene|B melanoma antigen family, member 4" 2001-06-01 2015-11-18 2015-11-18 85317 AF339515 NM_181704 Q86Y28 12676563 BAGE4 +HGNC:15732 BAGE5 B melanoma antigen family member 5 protein-coding gene gene with protein product Approved 13cen, GRCh38 novel patch 13cen, GRCh38 novel patch CT2.5 cancer/testis antigen family 2, member 5 B melanoma antigen family, member 5 2001-06-01 2015-11-18 2016-01-15 85316 uc062bdr.1 AF339516 NM_182484 Q86Y27 "12461691|12676563" +HGNC:29279 BAHCC1 BAH domain and coiled-coil containing 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "KIAA1447|BAHD2" 2005-12-15 2016-01-14 57597 ENSG00000266074 OTTHUMG00000184171 uc002kae.3 XM_371084 CCDS74173 Q9P281 10819331 MGI:2679272 RGD:1306500 BAHCC1 +HGNC:29153 BAHD1 bromo adjacent homology domain containing 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 KIAA0945 2004-01-14 2016-10-05 22893 ENSG00000140320 OTTHUMG00000129982 uc001zlv.3 AL833923 NM_014952 "CCDS10058|CCDS73705" Q8TBE0 10231032 MGI:2139371 RGD:1563127 BAHD1 613880 +HGNC:947 BAIAP2 BAI1 associated protein 2 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "BAP2|IRSp53" insulin receptor substrate of 53 kDa BAI1-associated protein 2 I-BAR domain containing 1287 1999-02-26 2016-02-02 2016-02-03 10458 ENSG00000175866 OTTHUMG00000177698 uc002jzg.3 AB015019 XM_006721637 "CCDS11775|CCDS11776|CCDS11777|CCDS45806" Q9UQB8 10343108 MGI:2137336 RGD:619814 BAIAP2 605475 +HGNC:44342 BAIAP2-AS1 BAIAP2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 "BAIAP2 antisense RNA 1 (non-protein coding)|BAIAP2 antisense RNA 1" 2012-08-14 2012-10-15 2012-10-15 440465 ENSG00000226137 OTTHUMG00000177697 uc060lfw.1 "AK027350|AK056555|AK075238|AK096609" NR_026857 +HGNC:21649 BAIAP2L1 BAI1 associated protein 2 like 1 protein-coding gene gene with protein product Approved 7q21.3-q22.1 07q21.3-q22.1 IRTKS insulin receptor tyrosine kinase substrate BAI1-associated protein 2-like 1 I-BAR domain containing 1287 2005-02-09 2016-02-02 2016-10-11 55971 ENSG00000006453 OTTHUMG00000165117 uc003upj.4 AF119666 NM_018842 CCDS34687 Q9UHR4 MGI:1914148 RGD:1308452 BAIAP2L1 611877 +HGNC:26203 BAIAP2L2 BAI1 associated protein 2 like 2 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "FLJ22582|pinkbar" planar intestinal- and kidney-specific BAR domain protein BAI1-associated protein 2-like 2 I-BAR domain containing 1287 2005-02-09 2016-02-02 2016-02-03 80115 ENSG00000128298 OTTHUMG00000151197 uc003auw.4 BC015619 NM_025045 CCDS43018 Q6UXY1 21743456 MGI:2652819 RGD:1595091 BAIAP2L2 +HGNC:948 BAIAP3 BAI1 associated protein 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "BAP3|KIAA0734" BAI1-associated protein 3 C2 domain containing 823 1999-02-26 2016-02-02 2016-02-02 8938 ENSG00000007516 OTTHUMG00000047833 uc002clk.3 AB017111 XM_011522730 "CCDS10434|CCDS55978|CCDS55979|CCDS58402|CCDS58403|CCDS66894" O94812 9790924 MGI:2685783 RGD:10059729 BAIAP3 604009 +HGNC:949 BAK1 BCL2 antagonist/killer 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "BCL2L7|BAK" CDN1 BCL2-antagonist/killer 1 BCL2 family 1057 1997-10-09 2016-02-24 2016-02-24 578 ENSG00000030110 OTTHUMG00000014530 uc003oes.4 U23765 NM_001188 CCDS4781 Q16611 "7715730|7715731" MGI:1097161 RGD:621635 BAK1 600516 +HGNC:996 BAK1P1 BCL2 antagonist/killer 1 pseudogene 1 pseudogene pseudogene Approved 20q11.21 20q11.21 BAK2 BCL2L7P1 "BCL2-like 7 pseudogene 1|BCL2-antagonist/killer 1 pseudogene 1" 1997-10-09 2010-01-05 2016-02-24 2016-02-24 600 ENSG00000175730 OTTHUMG00000158163 U16812 NG_000850 7715731 +HGNC:997 BAK1P2 BCL2 antagonist/killer 1 pseudogene 2 pseudogene pseudogene Approved 11q24.3 11q24.3 "BAK3|BAK3P" BCL2L7P2 "BCL2-like 7 pseudogene 2|BCL2-antagonist/killer 1 pseudogene 2" 1997-10-09 2010-01-05 2016-02-24 2016-02-24 601 ENSG00000236616 OTTHUMG00000165659 U16813 NG_005599 7715731 PGOHUM00000242541 +HGNC:30251 BAMBI BMP and activin membrane bound inhibitor protein-coding gene gene with protein product Approved 10p12.1 10p12.1 NMA BMP and activin membrane-bound inhibitor homolog (Xenopus laevis) 2004-02-04 2016-06-03 2016-10-05 25805 ENSG00000095739 OTTHUMG00000017874 uc001iuj.2 U23070 NM_012342 CCDS7162 Q13145 "8621228|19758997" MGI:1915260 RGD:621831 BAMBI 604444 +HGNC:43877 BANCR BRAF-activated non-protein coding RNA non-coding RNA RNA, long non-coding Approved 9q21.11-q21.12 09q21.11-q21.12 LINC00586 Long non-coding RNAs 788 2012-05-11 2016-10-11 100885775 ENSG00000278910 OTTHUMG00000189430 uc064tpg.1 AA442164 NR_047671 "22581800|22673151|24655544" +HGNC:17397 BANF1 barrier to autointegration factor 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 BAF 2003-02-14 2014-11-19 8815 ENSG00000175334 OTTHUMG00000166749 uc001ogo.4 AF068235 NM_003860 CCDS8125 O75531 9465049 MGI:1346330 RGD:620662 BANF1 603811 280581 +HGNC:20252 BANF1P1 barrier to autointegration factor 1 pseudogene 1 pseudogene pseudogene Approved 14q24.1 14q24.1 "BCRP1|D14S1460|D14S1460E|BCRG1" 2003-04-09 2012-04-19 317687 ENSG00000258531 OTTHUMG00000171668 NG_002455 9740667 PGOHUM00000248215 +HGNC:23426 BANF1P2 barrier to autointegration factor 1 pseudogene 2 pseudogene pseudogene Approved 10q26.3 10q26.3 bA122K13.8 BANF1L1 barrier to autointegration factor 1-like 1 2004-05-27 2012-04-19 2012-04-19 2012-04-19 414169 ENSG00000230306 OTTHUMG00000019314 NG_029687 PGOHUM00000238655 +HGNC:43883 BANF1P3 barrier to autointegration factor 1 pseudogene 3 pseudogene pseudogene Approved 2q37.1 02q37.1 2012-04-19 2012-04-19 100505506 ENSG00000237758 OTTHUMG00000153830 NG_029257 PGOHUM00000240547 +HGNC:43884 BANF1P4 barrier to autointegration factor 1 pseudogene 4 pseudogene pseudogene Approved 1q25.1 01q25.1 2012-04-19 2012-04-19 100653423 ENSG00000223828 OTTHUMG00000034935 NG_029684 PGOHUM00000244343 +HGNC:43885 BANF1P5 barrier to autointegration factor 1 pseudogene 5 pseudogene pseudogene Approved 7q22.3 07q22.3 2012-04-19 2014-11-19 101290503 ENSG00000225935 OTTHUMG00000154778 NG_033173 PGOHUM00000232957 +HGNC:16172 BANF2 barrier to autointegration factor 2 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "dJ803K15.1|BAF-L|BAFL|BAF2" C20orf179 chromosome 20 open reading frame 179 2001-07-17 2007-12-17 2007-12-17 2014-11-19 140836 ENSG00000125888 OTTHUMG00000031949 uc002wqa.3 BC054871 NM_178477 "CCDS13129|CCDS54449" Q9H503 MGI:2684961 RGD:1307909 BANF2 +HGNC:18233 BANK1 B-cell scaffold protein with ankyrin repeats 1 protein-coding gene gene with protein product Approved 4q24 04q24 "BANK|FLJ20706" Ankyrin repeat domain containing 403 2003-10-24 2015-10-12 55024 ENSG00000153064 OTTHUMG00000160958 uc003hvy.5 AB063170 NM_017935 "CCDS34038|CCDS47115|CCDS47116" Q8NDB2 "11782428|21208380|21480188" MGI:2442120 RGD:1564639 BANK1 610292 353589 +HGNC:13450 BANP BTG3 associated nuclear protein protein-coding gene gene with protein product Approved 16q24.2 16q24.2 "SMARBP1|SMAR1|FLJ20538|DKFZp761H172|FLJ10177|BEND1" BEN domain containing 1 BEN domain containing 422 2004-06-07 2016-10-05 54971 ENSG00000172530 OTTHUMG00000137678 uc002fkq.4 AK094158 NM_017869 "CCDS10966|CCDS42215|CCDS54052|CCDS54053|CCDS54054|CCDS54055" Q8N9N5 "10940556|10950932" MGI:1889023 RGD:1307464 BANP 611564 +HGNC:950 BAP1 BRCA1 associated protein 1 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "hucep-6|KIAA0272|UCHL2" ubiquitin carboxy-terminal hydrolase BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) Ubiquitin C-terminal hydrolases 998 1998-09-17 2015-11-13 2016-10-12 8314 ENSG00000163930 OTTHUMG00000158392 uc003ddx.5 AF045581 XM_011534149 CCDS2853 Q92560 9528852 MGI:1206586 RGD:1311938 LRG_529|http://www.lrg-sequence.org/LRG/LRG_529 BAP1 603089 289543 C12.004 objectId:2332 +HGNC:952 BARD1 BRCA1 associated RING domain 1 protein-coding gene gene with protein product Approved 2q35 02q35 "Ankyrin repeat domain containing|BRCA1 B complex" "403|1335" 1998-08-05 2015-01-28 580 ENSG00000138376 OTTHUMG00000133016 uc021vwi.2 NM_000465 "CCDS2397|CCDS74645|CCDS74646|CCDS74647|CCDS74648" Q99728 "8944023|9425226|15159397" MGI:1328361 RGD:621072 BARD1 601593 201093 +HGNC:953 BARHL1 BarH like homeobox 1 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "BarH (Drosophila)-like 1|BarH-like homeobox 1" NKL subclass homeoboxes and pseudogenes 519 2000-05-19 2016-01-19 2016-01-19 56751 ENSG00000125492 OTTHUMG00000020839 uc004cbp.2 AJ237816 NM_020064 CCDS6950 Q9BZE3 MGI:1859288 RGD:620648 BARHL1 605211 8419 +HGNC:954 BARHL2 BarH like homeobox 2 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "BarH (Drosophila)-like 2|BarH-like homeobox 2" NKL subclass homeoboxes and pseudogenes 519 2000-05-19 2016-01-19 2016-01-19 343472 ENSG00000143032 OTTHUMG00000010020 uc001dns.4 AJ251753 NM_020063 CCDS730 Q9NY43 14998930 MGI:1859314 RGD:620726 BARHL2 605212 8409 +HGNC:955 BARX1 BARX homeobox 1 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 BarH-like homeobox 1 NKL subclass homeoboxes and pseudogenes 519 2000-07-12 2007-07-09 2015-08-24 56033 ENSG00000131668 OTTHUMG00000020255 uc010mrh.4 NM_021570 CCDS35070 Q9HBU1 MGI:103124 RGD:1310884 BARX1 603260 8420 +HGNC:50673 BARX1-AS1 BARX1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9q22.32 09q22.32 2014-06-05 2014-06-05 101928040 ENSG00000235601 OTTHUMG00000020256 +HGNC:956 BARX2 BARX homeobox 2 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 BarH-like homeobox 2 NKL subclass homeoboxes and pseudogenes 519 1998-10-19 2007-07-09 2014-11-19 8538 ENSG00000043039 OTTHUMG00000165776 uc001qfc.5 AF031924 NM_003658 CCDS8481 Q9UMQ3 10644443 MGI:109617 RGD:1584840 BARX2 604823 8421 +HGNC:957 BASP1 brain abundant membrane attached signal protein 1 protein-coding gene gene with protein product Approved 5p15.1 05p15.1 "NAP-22|NAP22|CAP23|CAP-23" brain abundant, membrane attached signal protein 1 1999-12-08 2016-01-06 2016-01-06 10409 ENSG00000176788 OTTHUMG00000131061 uc031siz.2 AF039656 NM_001271606 CCDS3888 P80723 "9310187|9749536" MGI:1917600 RGD:621491 BASP1 605940 +HGNC:39418 BASP1P1 brain abundant, membrane attached signal protein 1 pseudogene 1 pseudogene pseudogene Approved 13q12.12 13q12.12 2010-12-03 2012-10-16 646201 ENSG00000230535 OTTHUMG00000016557 NR_033774 +HGNC:958 BATF basic leucine zipper ATF-like transcription factor protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "B-ATF|SFA-2|BATF1" "activating transcription factor B|SF-HT-activated gene 2" basic leucine zipper transcription factor, ATF-like Basic leucine zipper proteins 506 2000-05-15 2016-06-28 2016-10-05 10538 ENSG00000156127 OTTHUMG00000171486 uc001xrr.4 AF016898 NM_006399 CCDS9843 Q16520 "8570175|8630063" MGI:1859147 RGD:1304923 BATF 612476 +HGNC:25163 BATF2 basic leucine zipper ATF-like transcription factor 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 MGC20410 basic leucine zipper transcription factor, ATF-like 2 Basic leucine zipper proteins 506 2006-02-11 2016-06-28 2016-06-28 116071 ENSG00000168062 OTTHUMG00000165633 uc001ocf.2 AK092453 NM_138456 "CCDS8087|CCDS73317|CCDS76429" Q8N1L9 MGI:1921731 RGD:1311481 BATF2 614983 +HGNC:28915 BATF3 basic leucine zipper ATF-like transcription factor 3 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "JUNDM1|SNFT|JDP1" Jun dimerization protein 1 basic leucine zipper transcription factor, ATF-like 3 Basic leucine zipper proteins 506 2007-10-17 2016-06-28 2016-06-28 55509 ENSG00000123685 OTTHUMG00000036807 uc001hjl.3 AF255346 NM_018664 CCDS1508 Q9NR55 "10878360|12087103" MGI:1925491 RGD:620501 BATF3 612470 +HGNC:959 BAX BCL2 associated X, apoptosis regulator protein-coding gene gene with protein product Approved 19q13.33 19q13.33 BCL2L4 "BCL2-associated X protein|BCL2 associated X protein" BCL2 family 1057 1994-11-08 2016-06-17 2016-10-05 581 ENSG00000087088 OTTHUMG00000160476 uc002plk.4 NM_138763 "CCDS12742|CCDS12743|CCDS12744|CCDS12745|CCDS77327" Q07812 8358790 MGI:99702 RGD:2192 BAX 600040 +HGNC:960 BAZ1A bromodomain adjacent to zinc finger domain 1A protein-coding gene gene with protein product Approved 14q13.1-q13.2 14q13.1-q13.2 "hACF1|ACF1|WALp1|WCRF180" PHD finger proteins 88 1999-09-06 2015-11-13 2016-10-11 11177 ENSG00000198604 OTTHUMG00000140216 uc001wsk.4 AB032252 XM_011536376 "CCDS9651|CCDS41943" Q9NRL2 10662543 MGI:1309478 RGD:1306199 BAZ1A 605680 objectId:2773 +HGNC:961 BAZ1B bromodomain adjacent to zinc finger domain 1B protein-coding gene gene with protein product Approved 7q11.23 07q11.23 WSTF "Williams-Beuren syndrome chromosome region 9|Williams-Beuren syndrome chromosome region 10|transcription factor WSTF" "WBSCR9|WBSCR10" PHD finger proteins 88 1999-01-21 2015-11-13 2015-11-13 9031 ENSG00000009954 OTTHUMG00000023847 uc003tyc.4 AF084479 NM_032408 CCDS5549 Q9UIG0 "9858827|9828126" MGI:1353499 RGD:1597089 BAZ1B 605681 118970 objectId:2774 +HGNC:962 BAZ2A bromodomain adjacent to zinc finger domain 2A protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "KIAA0314|TIP5|WALp3" TTF-I interacting peptide 5 "PHD finger proteins|Methyl-CpG binding domain containing" "88|1025" 1999-09-06 2015-11-13 2015-11-13 11176 ENSG00000076108 OTTHUMG00000170332 uc001slq.2 AB032254 NM_013449 "CCDS44924|CCDS73483" Q9UIF9 "10662543|11532953" MGI:2151152 RGD:1305037 BAZ2A 605682 objectId:2721 +HGNC:963 BAZ2B bromodomain adjacent to zinc finger domain 2B protein-coding gene gene with protein product Approved 2q24.2 02q24.2 WALp4 "PHD finger proteins|Methyl-CpG binding domain containing" "88|1025" 1999-09-06 2015-11-13 2015-11-13 29994 ENSG00000123636 OTTHUMG00000132027 uc002uao.4 AB032255 XM_006712461 "CCDS2209|CCDS74594" Q9UIF8 10662543 MGI:2442782 RGD:1309801 BAZ2B 605683 objectId:2722 +HGNC:17868 BBC3 BCL2 binding component 3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "JFY1|PUMA" BCL2 homology region 3 (BH3) only 1277 2002-07-22 2016-01-14 27113 ENSG00000105327 OTTHUMG00000183489 uc002pgf.5 AF332558 NM_014417 "CCDS12697|CCDS46128|CCDS46129|CCDS46130" "Q96PG8|Q9BXH1" "11463392|11572983" MGI:2181667 RGD:631434 BBC3 605854 +HGNC:28093 BBIP1 BBSome interacting protein 1 protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "bA348N5.3|BBIP10|BBS18" NCRNA00081 non-protein coding RNA 81 "Bardet-Biedl syndrome associated|BBSome" "980|1122" 2008-09-02 2010-12-09 2010-12-09 2016-10-05 92482 ENSG00000214413 OTTHUMG00000019046 uc010qrf.2 AK025724 NR_015402 "CCDS55726|CCDS55727|CCDS55728|CCDS58094" A8MTZ0 19081074 MGI:1913610 RGD:6498801 BBIP1 613605 390746 +HGNC:19855 BBOF1 basal body orientation factor 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "C14orf45|CCDC176" "chromosome 14 open reading frame 45|coiled-coil domain containing 176" 2003-01-13 2015-10-08 2015-10-08 2015-10-08 80127 ENSG00000119636 OTTHUMG00000171202 BI457605 NM_025057 CCDS32119 Q8ND07 23900544 MGI:1920123 RGD:1560978 +HGNC:964 BBOX1 gamma-butyrobetaine hydroxylase 1 protein-coding gene gene with protein product Approved 11p14.2 11p14.2 "gamma-BBH|G-BBH|BBH" BBOX butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 1 1999-02-26 2016-02-22 2016-10-05 8424 ENSG00000129151 OTTHUMG00000166121 uc057zxq.1 AF082868 NM_003986 CCDS7862 O75936 9753662 MGI:1891372 RGD:619756 BBOX1 603312 1.14.11.1 +HGNC:50700 BBOX1-AS1 BBOX1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p14.2-p14.1 11p14.2-p14.1 2014-06-09 2016-10-11 103695435 ENSG00000254560 OTTHUMG00000166122 DA865512 NR_125768 +HGNC:966 BBS1 Bardet-Biedl syndrome 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 FLJ23590 "Bardet-Biedl syndrome associated|BBSome" "980|1122" 1994-01-28 2016-10-05 582 ENSG00000174483 OTTHUMG00000167110 uc001oij.2 AF503941 NM_024649 CCDS8142 Q8NFJ9 "9039982|12567324" MGI:1277215 RGD:1307581 Mutations of the Bardet-Biedl Syndrome Type 1 Gene (BBS2L2)|http://www.retina-international.org/files/sci-news/bbs1mut.htm BBS1 209901 118975 +HGNC:967 BBS2 Bardet-Biedl syndrome 2 protein-coding gene gene with protein product Approved 16q13 16q13 BBS "Bardet-Biedl syndrome associated|BBSome" "980|1122" 1993-10-26 2016-10-05 583 ENSG00000125124 OTTHUMG00000176943 uc002ejd.3 AF342736 NM_031885 CCDS32451 Q9BXC9 11285252 MGI:2135267 RGD:71091 Mutations of the Bardet-Biedl Syndrome Type 2 Gene|http://www.retina-international.org/files/sci-news/bbs2mut.htm BBS2 606151 118982 +HGNC:969 BBS4 Bardet-Biedl syndrome 4 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "Tetratricopeptide repeat domain containing|Bardet-Biedl syndrome associated|BBSome" "769|980|1122" 1995-07-11 2016-10-05 585 ENSG00000140463 OTTHUMG00000133510 uc002avb.4 AF090947 NM_033028 "CCDS10246|CCDS58377" Q96RK4 "7711739|11381270" MGI:2143311 RGD:1309134 Mutations of the Bardet-Biedl Syndrome Type 4 Gene|http://www.retina-international.org/files/sci-news/bbs4mut.htm BBS4 600374 118985 +HGNC:970 BBS5 Bardet-Biedl syndrome 5 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 DKFZp762I194 "Bardet-Biedl syndrome associated|BBSome" "980|1122" 1998-03-25 2016-10-05 129880 ENSG00000163093 OTTHUMG00000132207 uc002uet.4 AY604003 NM_152384 CCDS2233 Q8N3I7 "9888993|10053027" MGI:1919819 RGD:1310718 BBS5 603650 118987 +HGNC:18758 BBS7 Bardet-Biedl syndrome 7 protein-coding gene gene with protein product Approved 4q27 04q27 "FLJ10715|BBS2L1" "Bardet-Biedl syndrome associated|BBSome" "980|1122" 2003-02-05 2015-08-24 55212 ENSG00000138686 OTTHUMG00000133076 uc003ied.4 AF521644 XM_011532079 "CCDS3724|CCDS54799" Q8IWZ6 MGI:1918742 RGD:1309264 Mutations of the Bardet-Biedl Syndrome Type 7 Gene (BBS2L1)|http://www.retina-international.org/files/sci-news/bbs7mut.htm BBS7 607590 118990 +HGNC:30000 BBS9 Bardet-Biedl syndrome 9 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "B1|PTHB1" parathyroid hormone responsive B1 gene "Bardet-Biedl syndrome associated|BBSome" "980|1122" 2007-01-18 2016-10-05 27241 ENSG00000122507 OTTHUMG00000128659 uc003tdp.1 XM_011515264 "CCDS5441|CCDS34618|CCDS43566|CCDS47572" Q3SYG4 "16380913|10221542" MGI:2442833 RGD:1308472 BBS9 607968 118994 +HGNC:26291 BBS10 Bardet-Biedl syndrome 10 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 FLJ23560 C12orf58 chromosome 12 open reading frame 58 "Chaperonins|Bardet-Biedl syndrome associated" "587|980" 2006-02-09 2006-04-28 2006-04-28 2014-11-18 79738 ENSG00000179941 OTTHUMG00000147352 uc001syd.2 BC026355 NM_024685 CCDS9014 Q8TAM1 16582908 MGI:1919019 RGD:1560748 BBS10 610148 118978 +HGNC:26648 BBS12 Bardet-Biedl syndrome 12 protein-coding gene gene with protein product Approved 4q27 04q27 "FLJ35630|FLJ41559" C4orf24 chromosome 4 open reading frame 24 "Chaperonins|Bardet-Biedl syndrome associated" "587|980" 2006-05-22 2006-12-13 2006-12-13 2014-11-18 166379 ENSG00000181004 OTTHUMG00000133070 uc003ieu.3 AK123553 NM_152618 CCDS3728 Q6ZW61 17160889 MGI:2686651 RGD:1561608 BBS12 610683 137646 +HGNC:14422 BBX BBX, HMG-box containing protein-coding gene gene with protein product Approved 3q13.12 03q13.12 "MDS001|HSPC339|HBP2" x 001 protein bobby sox homolog (Drosophila) 2002-01-08 2016-06-06 2016-10-05 56987 ENSG00000114439 OTTHUMG00000150360 uc003dwk.6 AF168718 NM_020235 "CCDS2950|CCDS46881|CCDS63712" Q8WY36 11680820 MGI:1917758 RGD:1309769 BBX +HGNC:6722 BCAM basal cell adhesion molecule (Lutheran blood group) protein-coding gene gene with protein product Approved 19q13.32 19q13.32 CD239 LU "Lutheran blood group (Auberger b antigen included)|basal cell adhesion molecule (Lu and Au blood groups)" "Blood group antigens|CD molecules|C2-set domain containing|Immunoglobulin like domain containing" "454|471|592|594" 2001-06-22 2006-01-12 2006-02-23 2016-10-12 4059 ENSG00000187244 OTTHUMG00000180838 uc002ozu.5 X83425 NM_005581 "CCDS12644|CCDS42575" P50895 MGI:1929940 RGD:68378 LRG_798|http://www.lrg-sequence.org/LRG/LRG_798 BCAM 612773 CD239 +HGNC:23059 BCAN brevican protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "BEHAB|MGC13038|CSPG7" "chondroitin sulfate proteoglycan 7|brevican proteoglycan" "Hyalectan proteoglycans|V-set domain containing|Sushi domain containing|C-type lectin domain containing" "574|590|1179|1298" 2004-03-01 2016-10-05 63827 ENSG00000132692 OTTHUMG00000033322 uc001fpp.4 BC027971 NM_021948 "CCDS1149|CCDS1150" Q96GW7 "11054543|11873941" MGI:1096385 RGD:2194 BCAN 600347 +HGNC:24131 BCAP29 B-cell receptor associated protein 29 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 "BAP29|DKFZp686M2086" B-cell receptor-associated protein 29 2003-12-22 2016-07-26 2016-07-26 55973 ENSG00000075790 OTTHUMG00000154770 uc003vej.3 NM_018844 "CCDS34730|CCDS34731" Q9UHQ4 "8070407|12886015" MGI:101917 RGD:1359431 BCAP29 +HGNC:16695 BCAP31 B-cell receptor-associated protein 31 protein-coding gene gene with protein product Approved Xq28 Xq28 "DXS1357E|BAP31|6C6-Ag|CDM" 2003-12-22 2014-11-18 10134 ENSG00000185825 OTTHUMG00000024218 uc004fie.3 X81109 NM_005745 "CCDS14727|CCDS48191" P51572 MGI:1350933 RGD:1302944 BCAP31 300398 376561 +HGNC:51323 BCAP31P1 B-cell receptor-associated protein 31 pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 TCONS_l2_00010135 2014-10-03 2014-10-03 100194425 ENSG00000261217 OTTHUMG00000176372 NG_009002 +HGNC:51324 BCAP31P2 B-cell receptor-associated protein 31 pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 TCONS_l2_00009689 2014-10-03 2014-10-03 100194426 ENSG00000260047 OTTHUMG00000176440 NG_009003 PGOHUM00000293807 +HGNC:971 BCAR1 BCAR1, Cas family scaffolding protein protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "P130Cas|Crkas|CAS|CASS1" "Crk-associated substrate|Cas scaffolding protein family member 1" breast cancer anti-estrogen resistance 1 Cas scaffolding proteins 469 1999-04-29 2016-04-20 2016-04-20 9564 ENSG00000050820 OTTHUMG00000137604 uc002fdv.4 AJ242987 NM_014567 "CCDS10915|CCDS54037|CCDS54038|CCDS54039|CCDS54040|CCDS54041|CCDS54042|CCDS54043" P56945 "8413311|10639512" MGI:108091 RGD:2406 BCAR1 602941 +HGNC:51325 BCAR1P1 breast cancer anti-estrogen resistance 1 pseudogene 1 pseudogene pseudogene Approved 15q11.1 15q11.1 2014-10-03 2014-10-03 100533717 ENSG00000258397 OTTHUMG00000171656 NG_028857 PGOHUM00000246616 +HGNC:51326 BCAR1P2 breast cancer anti-estrogen resistance 1 pseudogene 2 pseudogene pseudogene Approved 15q11.2 15q11.2 2014-10-03 2014-10-03 100533718 ENSG00000258771 OTTHUMG00000171713 NG_028859 PGOHUM00000246633 +HGNC:973 BCAR3 breast cancer anti-estrogen resistance 3 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "NSP2|SH2D3B" SH2 domain containing 741 1999-04-29 2015-08-24 8412 ENSG00000137936 OTTHUMG00000010301 uc001dqb.5 U92715 XM_017002480 "CCDS745|CCDS58010|CCDS76181" O75815 9582273 MGI:1352501 RGD:1311688 BCAR3 604704 +HGNC:22170 BCAR4 breast cancer anti-estrogen resistance 4 (non-protein coding) non-coding RNA RNA, long non-coding Approved 16p13.13 16p13.13 breast cancer anti-estrogen resistance 4 2006-05-09 2011-08-30 2015-04-02 400500 ENSG00000262117 OTTHUMG00000177469 uc059qxb.1 NR_024050 "16778085|23202989" 613746 +HGNC:974 BCAS1 breast carcinoma amplified sequence 1 protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "NABC1|AIBC1" 1998-10-12 2014-11-19 8537 ENSG00000064787 OTTHUMG00000032772 uc002xws.3 AF041260 NM_003657 "CCDS13444|CCDS82631" O75363 9671742 MGI:1924210 RGD:628644 BCAS1 602968 +HGNC:975 BCAS2 breast carcinoma amplified sequence 2 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "DAM1|SPF27|Snt309" DNA amplified in mammary carcinoma 1 2000-01-31 2016-04-07 10286 ENSG00000116752 OTTHUMG00000011898 uc001efa.4 AB020623 NM_005872 CCDS874 O75934 "9731529|10403562" MGI:1915433 RGD:1306485 BCAS2 605783 +HGNC:39594 BCAS2P1 breast carcinoma amplified sequence 2 pseudogene 1 pseudogene pseudogene Approved 11q14.1 11q14.1 2011-03-16 2014-11-19 100127960 ENSG00000255051 OTTHUMG00000167015 NG_021825 PGOHUM00000242824 +HGNC:39595 BCAS2P2 breast carcinoma amplified sequence 2 pseudogene 2 pseudogene pseudogene Approved 1p21.2 01p21.2 2011-03-16 2014-11-19 100421045 ENSG00000234332 OTTHUMG00000010985 NG_026962 PGOHUM00000244120 +HGNC:39596 BCAS2P3 breast carcinoma amplified sequence 2 pseudogene 3 pseudogene pseudogene Approved 13q31.1 13q31.1 2011-03-16 2014-11-18 100128339 ENSG00000226670 OTTHUMG00000017128 NG_021971 PGOHUM00000248645 +HGNC:14347 BCAS3 BCAS3, microtubule associated cell migration factor protein-coding gene gene with protein product Approved 17q23.2 17q23.2 FLJ20128 Rudhira breast carcinoma amplified sequence 3 WD repeat domain containing 362 2001-01-09 2016-06-22 2016-06-22 54828 ENSG00000141376 OTTHUMG00000180064 uc002iyu.5 AF361219 NM_017679 "CCDS11626|CCDS45749|CCDS82176|CCDS82177|CCDS82178" Q9H6U6 "12378525|18030336|22300583" MGI:2385848 RGD:1560788 BCAS3 607470 +HGNC:14367 BCAS4 breast carcinoma amplified sequence 4 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "FLJ20495|CNOL" 2001-01-18 2016-10-05 55653 ENSG00000124243 OTTHUMG00000032735 uc002xvr.5 AK000502 NM_017843 "CCDS13432|CCDS33487" Q8TDM0 12378525 BCAS4 607471 +HGNC:976 BCAT1 branched chain amino acid transaminase 1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 BCT1 branched chain aminotransferase 1, cytosolic 2001-06-22 2016-03-07 2016-03-07 586 ENSG00000060982 OTTHUMG00000169053 uc001rgd.5 NM_005504 "CCDS44845|CCDS53760|CCDS53761|CCDS53762|CCDS53763" P54687 9165094 MGI:104861 RGD:2195 BCAT1 113520 2.6.1.42 +HGNC:977 BCAT2 branched chain amino acid transaminase 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 BCAM BCT2 branched chain aminotransferase 2, mitochondrial Minor histocompatibility antigens 870 2001-06-22 2016-03-07 2016-03-07 587 ENSG00000105552 OTTHUMG00000183327 uc002pkr.4 U68418 NM_001190 "CCDS12735|CCDS54290|CCDS74416" O15382 9165094 MGI:1276534 RGD:68948 BCAT2 113530 objectId:2893 2.6.1.42 +HGNC:978 BCCIP BRCA2 and CDKN1A interacting protein protein-coding gene gene with protein product Approved 10q26.2 10q26.2 "BCCIPalpha|TOK-1" BRCA2 and CDKN1A-interacting protein 2000-08-11 2001-11-29 2015-08-24 56647 ENSG00000107949 OTTHUMG00000019237 uc001ljb.5 AB040451 NM_016567 "CCDS7649|CCDS7650|CCDS7651" Q9P287 "11313963|10878006" MGI:1913415 RGD:1307362 BCCIP 611883 +HGNC:27050 BCDIN3D BCDIN3 domain containing RNA methyltransferase protein-coding gene gene with protein product Approved 12q13.12 12q13.12 BCDIN3 domain containing 2007-04-19 2016-03-07 2016-10-05 144233 ENSG00000186666 OTTHUMG00000169807 uc001rvh.4 NM_181708 CCDS8790 Q7Z5W3 23063121 MGI:1922534 RGD:1306433 BCDIN3D +HGNC:44113 BCDIN3D-AS1 BCDIN3D antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q13.12 12q13.12 BCDIN3D antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100286844 ENSG00000258057 OTTHUMG00000169706 uc001rvg.4 BC014925 NR_027499 +HGNC:981 BCGF1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:983 BCHE butyrylcholinesterase protein-coding gene gene with protein product Approved 3q26.1 03q26.1 E1 "CHE1|CHE2" "cholinesterase 1|cholinesterase (serum) 2" 1986-01-01 2016-10-05 590 ENSG00000114200 OTTHUMG00000158131 uc003fem.5 M16541 XM_017006967 CCDS3198 P06276 "1769657|2318303" MGI:894278 RGD:619996 ESTHER www server: ESTerases and alpha/beta Hydrolase Enzymes and Relatives|http://bioweb.ensam.inra.fr/esther BCHE 177400 118998 S09.980 objectId:2471 3.1.1.8 +HGNC:984 BCHEL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:985 BCHEL3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:986 BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide protein-coding gene gene with protein product Approved 19q13.2 19q13.2 MSU maple syrup urine disease OVD1A "branched chain keto acid dehydrogenase E1, alpha polypeptide (maple syrup urine disease)|2-oxoisovalerate dehydrogenase (lipoamide)" 1989-06-30 2005-11-29 2016-10-05 593 ENSG00000248098 OTTHUMG00000168128 uc002oqq.4 J04474 NM_000709 CCDS12581 P12694 MGI:107701 RGD:2196 BCKDHA 608348 119002 +HGNC:987 BCKDHB branched chain keto acid dehydrogenase E1 subunit beta protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "maple syrup urine disease|2-oxoisovalerate dehydrogenase subunit beta, mitochondrial" branched chain keto acid dehydrogenase E1, beta polypeptide 1989-06-30 2016-07-04 2016-07-04 594 ENSG00000083123 OTTHUMG00000016430 uc003pje.3 M55575 NM_000056 CCDS4994 P21953 MGI:88137 RGD:2197 BCKDHB 248611 119005 +HGNC:16902 BCKDK branched chain ketoacid dehydrogenase kinase protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2005-01-20 2014-11-18 10295 ENSG00000103507 OTTHUMG00000047356 uc059tky.1 AF026548 NM_005881 "CCDS10705|CCDS45467|CCDS61917" O14874 1889817 MGI:1276121 RGD:2198 BCKDK 614901 312680 objectId:1939 +HGNC:990 BCL2 BCL2, apoptosis regulator protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "Bcl-2|PPP1R50" protein phosphatase 1, regulatory subunit 50 B-cell CLL/lymphoma 2 "Protein phosphatase 1 regulatory subunits|BCL2 family" "694|1057" 2001-06-22 2016-06-17 2016-10-05 596 ENSG00000171791 OTTHUMG00000132791 uc002liu.2 M14745 "NM_000633|NM_000657" "CCDS11981|CCDS45882" P10415 MGI:88138 RGD:2199 BCL2 151430 119007 objectId:2844 +HGNC:991 BCL2A1 BCL2 related protein A1 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "GRS|BFL1|BCL2L5|ACC-1|ACC-2|ACC2|ACC1" HBPA1 "Minor histocompatibility antigens|BCL2 family" "870|1057" 1995-05-08 2016-01-13 2016-10-05 597 ENSG00000140379 OTTHUMG00000144173 uc002bfc.5 NM_004049 "CCDS10312|CCDS45322" Q16548 "8589678|12771180" "MGI:102687|MGI:1278326|MGI:1278325" RGD:620621 BCL2A1 601056 +HGNC:992 BCL2L1 BCL2 like 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "BCLX|BCL2L|Bcl-X|bcl-xL|bcl-xS|PPP1R52" protein phosphatase 1, regulatory subunit 52 "Protein phosphatase 1 regulatory subunits|BCL2 family" "694|1057" 1997-10-30 2016-01-13 2016-01-13 598 ENSG00000171552 OTTHUMG00000032192 uc002wwl.4 Z23115 NM_138578 "CCDS13188|CCDS13189" Q07817 8358789 MGI:88139 RGD:2200 BCL2L1 600039 objectId:2845 +HGNC:995 BCL2L2 BCL2 like 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "KIAA0271|BCL-W|PPP1R51" protein phosphatase 1, regulatory subunit 51 "Protein phosphatase 1 regulatory subunits|BCL2 family" "694|1057" 1997-07-22 2016-01-13 2016-10-05 599 ENSG00000129473 OTTHUMG00000028738 uc001wjg.4 D87461 NM_004050 CCDS9591 Q92843 8761287 MGI:108052 RGD:620717 BCL2L2 601931 objectId:2846 +HGNC:42959 BCL2L2-PABPN1 BCL2L2-PABPN1 readthrough other readthrough Approved 14q11.2 14q11.2 2011-09-28 2015-02-24 100529063 ENSG00000258643 OTTHUMG00000171498 uc001wjh.5 NM_001199864 CCDS55906 Q92843 +HGNC:993 BCL2L10 BCL2 like 10 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "Diva|Boo|BCL-B" BCL2-like 10 (apoptosis facilitator) BCL2 family 1057 1999-05-21 2016-01-13 2016-10-05 10017 ENSG00000137875 OTTHUMG00000131893 uc002abq.4 AF285092 NM_001306168 "CCDS10148|CCDS76756" Q9HD36 "9829980|9878060" MGI:1330841 RGD:621015 BCL2L10 606910 +HGNC:994 BCL2L11 BCL2 like 11 protein-coding gene gene with protein product Approved 2q13 02q13 "BOD|BimL|BimEL|BimS|BIM" BCL2-like 11 (apoptosis facilitator) BCL2 homology region 3 (BH3) only 1277 1999-12-10 2016-01-13 2016-10-12 10018 ENSG00000153094 OTTHUMG00000131256 uc002tgv.2 AF032458 XM_005263550 "CCDS2089|CCDS2092|CCDS42731|CCDS56131|CCDS56132|CCDS56133|CCDS56134|CCDS56135|CCDS56136|CCDS74560|CCDS74561|CCDS74559" O43521 "9731710|9430630" MGI:1197519 RGD:628774 LRG_620|http://www.lrg-sequence.org/LRG/LRG_620 BCL2L11 603827 +HGNC:13787 BCL2L12 BCL2 like 12 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 BCL2-like 12 (proline rich) BCL2 family 1057 2001-04-27 2016-01-13 2016-10-05 83596 ENSG00000126453 OTTHUMG00000183239 uc002ppa.4 AF289220 NM_052842 "CCDS12776|CCDS46144|CCDS74424|CCDS74423" Q9HB09 MGI:1922986 RGD:1307361 BCL2L12 610837 +HGNC:51327 BCL2L12P1 BCL2 like 12 pseudogene 1 pseudogene pseudogene Approved 3q22.1 03q22.1 BCL2-like 12 (proline rich) pseudogene 1 2014-10-03 2016-01-13 2016-01-13 100289095 ENSG00000248530 OTTHUMG00000159630 NG_022270 PGOHUM00000299591 +HGNC:17164 BCL2L13 BCL2 like 13 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "MIL1|BCL-RAMBO" BCL2-like 13 (apoptosis facilitator) BCL2 family 1057 2002-09-20 2016-01-13 2016-10-05 23786 ENSG00000099968 OTTHUMG00000150088 uc002zmw.5 AF146568 NM_015367 "CCDS13746|CCDS59447|CCDS59448|CCDS74810|CCDS74811|CCDS74812|CCDS74813|CCDS74814" Q9BXK5 "11262395|11381032" MGI:2136959 RGD:1306985 BCL2L13 +HGNC:16657 BCL2L14 BCL2 like 14 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "BCLG|BCL-G" BCL2-like 14 (apoptosis facilitator) BCL2 family 1057 2004-02-09 2016-01-13 2016-10-05 79370 ENSG00000121380 OTTHUMG00000159528 uc058lhp.1 AF281254 NM_030766 "CCDS8645|CCDS8646" Q9BZR8 11054413 MGI:1914063 RGD:1562777 BCL2L14 606126 +HGNC:33624 BCL2L15 BCL2 like 15 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "Bfk|FLJ22588" C1orf178 chromosome 1 open reading frame 178 BCL2 family 1057 2007-09-24 2016-01-13 2016-01-13 440603 ENSG00000188761 OTTHUMG00000011940 uc001edw.4 NM_001010922 CCDS30809 Q5TBC7 "12700646|15961081|16690252|17412810" MGI:2685412 RGD:1562344 BCL2L15 +HGNC:998 BCL3 B-cell CLL/lymphoma 3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "B-cell lymphoma 3-encoded protein|B-cell leukemia/lymphoma 3|chronic lymphatic leukemia protein" "D19S37|BCL4" Ankyrin repeat domain containing 403 1986-01-01 2016-02-10 602 ENSG00000069399 OTTHUMG00000151517 uc010xxe.3 M31732 NM_005178 CCDS12642 P20749 "1501714|2180580" MGI:88140 RGD:1589465 BCL3 109560 +HGNC:1000 BCL5 B-cell CLL/lymphoma 5 phenotype phenotype only Approved 17q22 17q22 1990-09-10 2011-02-15 603 "2682663|8400234" 151441 +HGNC:1001 BCL6 B-cell CLL/lymphoma 6 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "ZBTB27|LAZ3|BCL5|BCL6A" ZNF51 zinc finger protein 51 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1993-04-12 2008-08-01 2016-10-05 604 ENSG00000113916 OTTHUMG00000156441 uc003frq.3 NM_001706 "CCDS3289|CCDS46975" P41182 MGI:107187 RGD:1309345 BCL6 109565 158372 404 +HGNC:1002 BCL6B B-cell CLL/lymphoma 6B protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "ZBTB28|BAZF" ZNF62 "zinc finger protein 62|B-cell CLL/lymphoma 6, member B (zinc finger protein)|B-cell CLL/lymphoma 6, member B" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2000-01-20 2016-03-22 2016-03-22 255877 ENSG00000161940 OTTHUMG00000177882 uc010clt.2 AI672318 NM_181844 CCDS42248 Q8N143 9632807 MGI:1278332 RGD:1563179 BCL6B 608992 +HGNC:1004 BCL7A BCL tumor suppressor 7A protein-coding gene gene with protein product Approved 12q24.31 12q24.31 BCL7 B-cell CLL/lymphoma 7A 1999-03-19 2016-07-04 2016-10-05 605 ENSG00000110987 OTTHUMG00000168951 uc001ubp.4 X89984 NM_020993 "CCDS9226|CCDS53841" Q4VC05 "8605326|9931421" MGI:1924295 RGD:1585128 BCL7A 601406 +HGNC:1005 BCL7B BCL tumor suppressor 7B protein-coding gene gene with protein product Approved 7q11.23 07q11.23 B-cell CLL/lymphoma 7B 1999-03-19 2016-07-04 2016-07-04 9275 ENSG00000106635 OTTHUMG00000023412 uc003tyf.3 X89985 NM_001707 "CCDS5550|CCDS56489|CCDS75613" Q9BQE9 "8605326|9806765" MGI:1332238 RGD:1597090 BCL7B 605846 +HGNC:1006 BCL7C BCL tumor suppressor 7C protein-coding gene gene with protein product Approved 16p11.2 16p11.2 B-cell CLL/lymphoma 7C 1999-03-19 2016-07-04 2016-10-05 9274 ENSG00000099385 OTTHUMG00000177719 uc002dzv.5 AJ223980 NM_004765 "CCDS10693|CCDS67012" Q8WUZ0 9931421 MGI:1332237 RGD:1308439 BCL7C 605847 +HGNC:1008 BCL9 B-cell CLL/lymphoma 9 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 1997-07-01 2016-10-05 607 ENSG00000116128 OTTHUMG00000014031 uc031uul.2 Y13620 NM_004326 CCDS30833 O00512 9490669 MGI:1924828 RGD:1306934 BCL9 602597 +HGNC:23688 BCL9L B-cell CLL/lymphoma 9-like protein-coding gene gene with protein product Approved 11q23.3 11q23.3 DLNB11 2003-12-09 2015-08-27 283149 ENSG00000186174 OTTHUMG00000166414 uc001pug.5 AB094091 NM_182557 CCDS8403 Q86UU0 12964048 MGI:1933114 RGD:1309096 BCL9L 609004 +HGNC:51328 BCL9P1 B-cell CLL/lymphoma 9 pseudogene 1 pseudogene pseudogene Approved 5q13.1 05q13.1 2014-10-03 2014-10-03 100419324 ENSG00000249238 OTTHUMG00000162353 NG_024682 PGOHUM00000300980 +HGNC:989 BCL10 B-cell CLL/lymphoma 10 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "CARMEN|CIPER|mE10|c-E10|CLAP" "CARD-like apoptotic protein|CARD-containing apoptotic signaling protein|CARD containing molecule enhancing NF-kB|caspase-recruiting domain-containing protein|CARD-containing proapoptotic protein" Caspase recruitment domain containing 959 1999-01-08 2016-10-05 8915 ENSG00000142867 OTTHUMG00000009965 uc021opd.3 AJ006288 NM_003921 CCDS704 O95999 9989495 MGI:1337994 RGD:620544 BCL10 603517 454025 +HGNC:13221 BCL11A B-cell CLL/lymphoma 11A protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "BCL11A-XL|BCL11A-L|BCL11A-S|CTIP1|HBFQTL5|ZNF856" EVI9 "ecotropic viral integration site 9|B-cell CLL/lymphoma 11A (zinc finger protein)" Zinc fingers C2H2-type 28 2001-02-28 2016-01-06 2016-01-06 53335 ENSG00000119866 OTTHUMG00000129420 uc002sae.2 AJ404611 NM_022893 "CCDS1861|CCDS1862|CCDS46295" Q9H165 "11719382|18245381" MGI:106190 RGD:1309923 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=BCL11A BCL11A 606557 139145 341 +HGNC:13222 BCL11B B-cell CLL/lymphoma 11B protein-coding gene gene with protein product Approved 14q32.2 14q32.2 "CTIP-2|CTIP2|hRIT1-alpha" ZNF856B B-cell CLL/lymphoma 11B (zinc finger protein) Zinc fingers C2H2-type 28 2001-02-28 2016-01-06 2016-10-05 64919 ENSG00000127152 OTTHUMG00000028967 uc001yga.5 AJ404614 NM_138576 "CCDS9949|CCDS9950" Q9C0K0 "11719382|16950772" MGI:1929913 RGD:1311128 BCL11B 606558 90 +HGNC:16863 BCLAF1 BCL2 associated transcription factor 1 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "KIAA0164|BTF" BCL2-associated transcription factor 1 2004-01-13 2016-01-28 2016-01-28 9774 ENSG00000029363 OTTHUMG00000033323 uc003qgx.1 AF249273 NM_014739 "CCDS5177|CCDS47485|CCDS47486|CCDS75525" Q9NYF8 "8724849|10330179" MGI:1917580 RGD:1309704 BCLAF1 612588 +HGNC:51329 BCLAF1P1 BCL2 associated transcription factor 1 pseudogene 1 pseudogene pseudogene Approved 5q22.1 05q22.1 BCL2-associated transcription factor 1 pseudogene 1 2014-10-03 2016-01-28 2016-01-28 728366 ENSG00000248966 OTTHUMG00000163298 NG_005782 PGOHUM00000300710 +HGNC:51807 BCLAF1P2 BCL2 associated transcription factor 1 pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 BCL2-associated transcription factor 1 pseudogene 2 2015-06-09 2016-01-28 2016-01-28 731605 ENSG00000279800 OTTHUMG00000191386 PGOHUM00000293564 +HGNC:13815 BCO1 beta-carotene oxygenase 1 protein-coding gene gene with protein product Approved 16q23.2 16q23.2 "FLJ10730|BCMO" "BCDO|BCDO1|BCMO1" "beta-carotene 15, 15'-dioxygenase 1|beta-carotene 15,15'-monooxygenase 1" 2000-11-13 2014-07-21 2014-07-21 2014-11-19 53630 ENSG00000135697 OTTHUMG00000137630 AF294900 NM_017429 CCDS10934 Q9HAY6 "10766819|10799297|24187135" MGI:1926923 RGD:70981 605748 204452 1.14.99.36 +HGNC:18503 BCO2 beta-carotene oxygenase 2 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "FLJ34464|B-DIOX-II" "beta-carotene 9',10' oxygenase|carotenoid-9',10'-cleaving dioxygenase" BCDO2 beta-carotene dioxygenase 2 2002-04-10 2008-04-15 2008-04-15 2014-11-19 83875 ENSG00000197580 OTTHUMG00000167155 uc001pnf.4 AJ290393 NM_001037290 "CCDS8358|CCDS41716|CCDS58181|CCDS58182|CCDS58183" Q9BYV7 "11278918|15983114|15949678" MGI:2177469 RGD:1309022 BCO2 611740 1.13.11.71 +HGNC:20893 BCOR BCL6 corepressor protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "FLJ20285|KIAA1575" BCL6 co-repressor Ankyrin repeat domain containing 403 2003-05-22 2010-06-10 2016-10-12 54880 ENSG00000183337 OTTHUMG00000024100 uc004dep.5 AF317391 NM_017745 "CCDS14250|CCDS48092|CCDS48093" Q6W2J9 10898795 MGI:1918708 RGD:1562735 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BCOR|LRG_627|http://www.lrg-sequence.org/LRG/LRG_627" BCOR 300485 119012 +HGNC:25657 BCORL1 BCL6 corepressor-like 1 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 FLJ11362 CXorf10 "chromosome X open reading frame 10|BCL6 co-repressor-like 1" Ankyrin repeat domain containing 403 2004-07-27 2010-06-10 2016-10-12 63035 ENSG00000085185 OTTHUMG00000022379 uc065bbq.1 AL136450 NM_021946 CCDS14616 Q5H9F3 MGI:2443910 RGD:1566108 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BCORL1|LRG_628|http://www.lrg-sequence.org/LRG/LRG_628" BCORL1 300688 +HGNC:23953 BCORP1 BCL6 corepressor pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 FLJ39821 BCORL2 "BCL6 co-repressor-like 2|BCL6 corepressor-like 2" 2004-07-27 2010-09-30 2010-09-30 2014-11-19 286554 ENSG00000215580 OTTHUMG00000036498 AK097140 NM_173700 Q8N888 BCORP1 PGOHUM00000233784 +HGNC:1014 BCR BCR, RhoGEF and GTPase activating protein protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "D22S662|CML|PHL|ALL" "D22S11|BCR1" breakpoint cluster region "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|C2 domain containing" "682|722|823" 1986-01-01 2016-05-13 2016-10-05 613 ENSG00000186716 OTTHUMG00000150655 uc002zww.4 NM_004327 "CCDS13806|CCDS13807" P11274 "1657398|18070886" MGI:88141 RGD:1307993 BCR 151410 119016 objectId:2755 +HGNC:39073 BCRP1 breakpoint cluster region pseudogene 1 pseudogene pseudogene Approved 22q11.23 22q11.23 BCR-1 2010-09-30 2013-09-05 644079 ENSG00000225098 OTTHUMG00000150768 NG_009423 3267213 PGOHUM00000246290 +HGNC:1015 BCRP2 breakpoint cluster region pseudogene 2 pseudogene pseudogene Approved 22q11.21 22q11.21 BCR-2 "BCR2|BCRL2" breakpoint cluster region-like 2 2001-06-22 2010-10-01 2010-10-01 2016-10-05 400892 ENSG00000169668 OTTHUMG00000150627 NG_007131 3267213 PGOHUM00000246420 +HGNC:1016 BCRP3 breakpoint cluster region pseudogene 3 pseudogene pseudogene Approved 22q11.23 22q11.23 "BCR3|BCRL6|BCRL3" "breakpoint cluster region-like 6|breakpoint cluster region-like 3" 2001-06-22 2010-09-30 2010-09-30 2016-10-05 644165 ENSG00000215481 OTTHUMG00000150726 NR_024494 3267213 PGOHUM00000246539 +HGNC:1017 BCRP4 breakpoint cluster region pseudogene 4 pseudogene pseudogene Approved 22q11.22 22q11.22 BCR-4 "BCR4|BCRL4" breakpoint cluster region-like 4 2001-06-22 2010-09-30 2010-09-30 2016-10-05 616 ENSG00000215456 OTTHUMG00000151175 D87002 NG_000002 9074928 PGOHUM00000246482 +HGNC:1018 BCRP5 breakpoint cluster region pseudogene 5 pseudogene pseudogene Approved 22q11.21 22q11.21 BCRL5 breakpoint cluster region-like 5 1999-10-29 2010-10-01 2010-10-01 2010-10-01 648980 ENSG00000235062 OTTHUMG00000150757 NG_009418 10591208 PGOHUM00000246249 +HGNC:39074 BCRP6 breakpoint cluster region pseudogene 6 pseudogene pseudogene Approved 22q11.21 22q11.21 2010-10-01 2013-09-05 728468 ENSG00000169662 OTTHUMG00000150784 NG_009421 PGOHUM00000264293 +HGNC:39075 BCRP7 breakpoint cluster region pseudogene 7 pseudogene pseudogene Approved 22q11.21 22q11.21 2010-10-01 2010-10-01 100133163 ENSG00000215544 OTTHUMG00000030708 NG_009420 PGOHUM00000246224 +HGNC:39076 BCRP8 breakpoint cluster region pseudogene 8 pseudogene pseudogene Approved 22q11.23 22q11.23 2010-10-01 2014-11-18 100133044 ENSG00000236794 OTTHUMG00000155712 NG_032057 +HGNC:49113 BCRP9 breakpoint cluster region pseudogene 9 pseudogene pseudogene Approved 13q21.32 13q21.32 2013-09-05 2013-09-05 107126287 ENSG00000271287 OTTHUMG00000184867 NG_046622 PGOHUM00000248620 +HGNC:1020 BCS1L BCS1 homolog, ubiquinol-cytochrome c reductase complex chaperone protein-coding gene gene with protein product Approved 2q35 02q35 "Hs.6719|BCS|h-BCS|BJS" "GRACILE syndrome|Bjornstad syndrome" "BCS1 (yeast homolog)-like|BCS1-like (yeast)|BCS1-like (S. cerevisiae)|BC1 (ubiquinol-cytochrome c reductase) synthesis-like" "AAA ATPases|Mitochondrial respiratory chain complex assembly factors" "413|645" 1998-07-03 2015-11-12 2016-10-12 617 ENSG00000074582 OTTHUMG00000133114 uc002viq.3 AF026849 NM_004328 CCDS2419 Q9Y276 "9878253|17314340" MGI:1914071 RGD:1359658 LRG_539|http://www.lrg-sequence.org/LRG/LRG_539 BCS1L 603647 119021 +HGNC:1022 BCYRN1 brain cytoplasmic RNA 1 non-coding RNA RNA, long non-coding Approved 2p21 02p21 "BC200|BC200a|NCRNA00004|LINC00004" "brain cytoplasmic RNA 200-alpha|non-protein coding RNA 4|long intergenic non-protein coding RNA 4" "brain cytoplasmic RNA 1, Bc1 analog (mouse)|brain cytoplasmic RNA 1 (non-protein coding)" Long non-coding RNAs 788 1998-06-25 2012-08-16 2016-10-05 618 ENSG00000236824 OTTHUMG00000151778 uc032nmf.2 AF020057 NR_001568 "9858834|8265590|17553964|15240511|11399078" 606089 BC200 +HGNC:1023 BCYRN1P1 brain cytoplasmic RNA 1, pseudogene 1 pseudogene pseudogene Approved Xq27.1 Xq27.1 BC200b 1998-06-25 2011-04-21 619 U01307 NG_003040 8265590 +HGNC:1024 BCYRN1P2 brain cytoplasmic RNA 1, pseudogene 2 pseudogene pseudogene Approved 1q41 not on reference assembly 01q41 not on reference assembly BC200g 1998-06-25 2015-02-09 620 U01308 NG_001085 8265590 +HGNC:39833 BCYRN1P3 brain cytoplasmic RNA 1, pseudogene 3 pseudogene pseudogene Approved 13q11 13q11 2011-03-30 2011-03-30 654337 NG_005375 8265590 +HGNC:1027 BDH1 3-hydroxybutyrate dehydrogenase, type 1 protein-coding gene gene with protein product Approved 3q29 03q29 SDR9C1 short chain dehydrogenase/reductase family 9C, member 1 BDH 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) Short chain dehydrogenase/reductase superfamily 743 1993-08-26 2005-11-15 2005-11-15 2015-08-26 622 ENSG00000161267 OTTHUMG00000155478 uc003fxu.3 M93107 NM_004051 CCDS3328 Q02338 "1639787|19027726" MGI:1919161 RGD:620131 BDH1 603063 1.1.1.30 +HGNC:32389 BDH2 3-hydroxybutyrate dehydrogenase, type 2 protein-coding gene gene with protein product Approved 4q24 04q24 "UCPA-OR|FLJ13261|UNQ6308|PRO20933|SDR15C1" short chain dehydrogenase/reductase family 15C, member 1 DHRS6 dehydrogenase/reductase (SDR family) member 6 Short chain dehydrogenase/reductase superfamily 743 2005-11-22 2015-07-17 56898 ENSG00000164039 OTTHUMG00000074039 uc003hwz.4 AF164790 NM_020139 CCDS3663 Q9BUT1 "16380372|19027726" MGI:1917022 RGD:1309898 BDH2 1.1.1.30 +HGNC:21476 BDH2P1 3-hydroxybutyrate dehydrogenase, type 2 pseudogene 1 pseudogene pseudogene Approved 6q16.2 06q16.2 bA758C21.1 DHRS6P1 dehydrogenase/reductase (SDR family) member 6 pseudogene 1 2003-11-26 2006-01-16 2006-01-16 2016-10-05 389416 ENSG00000232699 OTTHUMG00000015260 NG_005299 +HGNC:1029 BDKRB1 bradykinin receptor B1 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 "BKR1|B1BKR|bradyb1" Bradykinin receptors 223 1993-04-07 2016-10-05 623 ENSG00000100739 OTTHUMG00000171412 uc001yfh.4 L42383 NM_000710 CCDS9943 P46663 8808279 MGI:88144 RGD:620401 BDKRB1 600337 objectId:41 +HGNC:1030 BDKRB2 bradykinin receptor B2 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 BK-2 Bradykinin receptors 223 1993-04-07 2016-01-15 624 ENSG00000168398 OTTHUMG00000171408 uc001yfg.3 S56772 NM_000623 CCDS9942 P30411 7916737 MGI:102845 RGD:2201 BDKRB2 113503 objectId:42 +HGNC:1031 BDM entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:1033 BDNF brain derived neurotrophic factor protein-coding gene gene with protein product Approved 11p14.1 11p14.1 neurotrophin Endogenous ligands 542 1991-01-15 2016-06-01 2016-06-01 627 ENSG00000176697 OTTHUMG00000178797 uc001mrz.5 AB038670 NM_170735 "CCDS7865|CCDS7866|CCDS44558|CCDS41628" P23560 "2236018|1889806|17942328|17493809" MGI:88145 RGD:2202 BDNF 113505 119027 +HGNC:20608 BDNF-AS BDNF antisense RNA non-coding RNA RNA, long non-coding Approved 11p14.1 11p14.1 "BT2A|BT2B|BT2C|BT2D|NCRNA00049|BDNF-AS1" "non-protein coding RNA 49|BDNF antisense RNA 1 (non-protein coding)" BDNFOS "BDNF opposite strand (non-protein coding)|BDNF antisense RNA (non-protein coding)" Long non-coding RNAs 788 2005-02-01 2012-05-03 2012-08-15 2014-09-19 497258 ENSG00000245573 uc001mrq.5 AY054391 NR_002832 "15666411|22446693" 611468 +HGNC:13652 BDP1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "TFIIIB150|TFC5|TFIIIB90|KIAA1689|HSA238520|KIAA1241" "TFNR|TAF3B1" TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1 Myb/SANT domain containing 532 2000-09-27 2001-11-30 2001-11-29 2016-03-01 55814 ENSG00000145734 OTTHUMG00000162506 uc003kbp.2 AF298151 NM_018429 CCDS43328 A6H8Y1 "11214970|11040218" MGI:1347077 RGD:1308512 BDP1 607012 +HGNC:31044 BDP1P B double prime 1 pseudogene pseudogene pseudogene Approved 18q23 18q23 2008-01-31 2014-10-03 724038 ENSG00000264736 OTTHUMG00000179339 NG_005602 +HGNC:24160 BEAN1 brain expressed, associated with NEDD4, 1 protein-coding gene gene with protein product Approved 16q21 16q21 SCA31 spinocerebellar ataxia 31 2010-10-05 2014-11-18 146227 ENSG00000166546 OTTHUMG00000173370 uc021tjl.2 BC000818 NM_001136106 "CCDS54015|CCDS58469|CCDS58470" Q3B7T3 "11042109|8619474|23607545" MGI:1929597 RGD:1562003 BEAN1 612051 326090 +HGNC:51114 BEAN1-AS1 BEAN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16q21 16q21 2014-07-30 2014-07-30 101927726 ENSG00000261656 OTTHUMG00000175781 NR_109960 +HGNC:1034 BECN1 beclin 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "ATG6|VPS30" ATG6 autophagy related 6 homolog (S. cerevisiae) "beclin 1 (coiled-coil, moesin-like BCL2 interacting protein)|beclin 1, autophagy related" Autophagy related 1022 1998-11-27 2016-04-28 2016-10-05 8678 ENSG00000126581 OTTHUMG00000180653 uc002ibn.3 AF077301 NM_003766 "CCDS11441|CCDS82132" Q14457 9765397 MGI:1891828 RGD:620190 BECN1 604378 +HGNC:51330 BECN1P2 beclin 1 pseudogene 2 pseudogene pseudogene Approved 6q13 06q13 beclin 1, autophagy related, pseudogene 2 2014-10-03 2016-04-28 2016-04-28 100420149 ENSG00000219669 OTTHUMG00000014998 NG_025950 PGOHUM00000301842 +HGNC:38606 BECN2 beclin 2 protein-coding gene gene with protein product Approved 1q43 01q43 BECN1P1 beclin 1, autophagy related, pseudogene 1 2010-06-29 2015-02-27 2015-02-27 2015-05-06 441925 ENSG00000196289 OTTHUMG00000039863 NM_001290693 CCDS81433 A8MW95 23954414 MGI:2684950 RGD:1563293 615687 PGOHUM00000296838 +HGNC:24163 BEGAIN brain enriched guanylate kinase associated protein-coding gene gene with protein product Approved 14q32.2 14q32.2 KIAA1446 "brain-enriched guanylate kinase-associated homolog (rat)|brain-enriched guanylate kinase-associated" 2007-08-16 2015-11-19 2015-11-19 57596 ENSG00000183092 OTTHUMG00000171589 uc001yhq.4 BC002607 NM_020836 CCDS9962 Q9BUH8 10819331 MGI:3044626 RGD:708347 BEGAIN +HGNC:28509 BEND2 BEN domain containing 2 protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 MGC33653 CXorf20 chromosome X open reading frame 20 BEN domain containing 422 2004-06-02 2008-10-03 2008-10-03 2016-10-05 139105 ENSG00000177324 OTTHUMG00000021211 uc004cyj.5 AK128155 NM_153346 "CCDS14184|CCDS55375" Q8NDZ0 12477932 RGD:7741042 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BEND2 BEND2 +HGNC:23040 BEND3 BEN domain containing 3 protein-coding gene gene with protein product Approved 6q21 06q21 KIAA1553 KIAA1553 BEN domain containing 422 2003-11-21 2008-10-03 2008-10-03 2014-11-18 57673 ENSG00000178409 OTTHUMG00000015308 uc063qjz.1 AB046773 NM_020913 CCDS34507 Q5T5X7 MGI:2677212 RGD:1596570 BEND3 616374 +HGNC:45014 BEND3P1 BEN domain containing 3 pseudogene 1 pseudogene pseudogene Approved 10q11.23 10q11.23 2013-01-08 2014-10-03 644459 ENSG00000231345 OTTHUMG00000018236 NG_011921 PGOHUM00000290159 +HGNC:45015 BEND3P2 BEN domain containing 3 pseudogene 2 pseudogene pseudogene Approved 9q22.31 09q22.31 2013-01-08 2014-10-03 392368 ENSG00000224809 OTTHUMG00000020220 NG_011923 PGOHUM00000304387 +HGNC:45016 BEND3P3 BEN domain containing 3 pseudogene 3 pseudogene pseudogene Approved 10q22.3 10q22.3 2013-01-08 2014-10-03 650623 ENSG00000278616 OTTHUMG00000187848 NR_027512 PGOHUM00000290215 +HGNC:23815 BEND4 BEN domain containing 4 protein-coding gene gene with protein product Approved 4p13 04p13 "FLJ35632|FLJ43965" CCDC4 coiled-coil domain containing 4 BEN domain containing 422 2005-06-22 2008-10-03 2008-10-03 2015-08-24 389206 ENSG00000188848 OTTHUMG00000160531 uc003gwn.4 AK092951 NM_207406 CCDS47048 Q6ZU67 MGI:3648414 RGD:1584735 BEND4 +HGNC:25668 BEND5 BEN domain containing 5 protein-coding gene gene with protein product Approved 1p33 01p33 FLJ11588 C1orf165 chromosome 1 open reading frame 165 BEN domain containing 422 2005-07-19 2008-10-03 2008-10-03 2014-11-19 79656 ENSG00000162373 OTTHUMG00000008153 uc001crx.5 BC007932 NM_024603 CCDS552 Q7L4P6 12477932 MGI:1914871 RGD:1584958 BEND5 +HGNC:20871 BEND6 BEN domain containing 6 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "FLJ30162|bA203B9.1" C6orf65 chromosome 6 open reading frame 65 BEN domain containing 422 2003-05-07 2008-10-03 2008-10-03 2014-11-18 221336 ENSG00000151917 OTTHUMG00000014914 uc010kab.4 AK054724 NM_152731 "CCDS43476|CCDS83102" Q5SZJ8 MGI:2444572 RGD:1310392 BEND6 +HGNC:23514 BEND7 BEN domain containing 7 protein-coding gene gene with protein product Approved 10p13 10p13 FLJ40283 C10orf30 chromosome 10 open reading frame 30 BEN domain containing 422 2003-11-21 2008-10-03 2008-10-03 2016-10-05 222389 ENSG00000165626 OTTHUMG00000017699 uc001imm.3 BC031618 NM_152751 "CCDS7099|CCDS41490" Q8N7W2 MGI:2443100 RGD:1305898 BEND7 +HGNC:51362 BEND7P1 BEN domain containing 7 pseudogene 1 pseudogene pseudogene Approved Xq22.1 Xq22.1 2014-10-15 2014-10-15 100419793 ENSG00000230320 OTTHUMG00000022058 NG_026866 PGOHUM00000305221 +HGNC:12703 BEST1 bestrophin 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "BMD|BEST|RP50" Best disease VMD2 vitelliform macular dystrophy 2 Bestrophins 866 1992-11-25 2006-10-18 2006-10-18 2016-10-05 7439 ENSG00000167995 OTTHUMG00000167469 uc001nss.4 AF057170 NM_004183 "CCDS31580|CCDS44623" O76090 "1302019|17003041" MGI:1346332 RGD:1311656 VMD2 Mutation Database @ Institute of Human Genetics, University of Regensburg|http://www-huge.uni-regensburg.de/BEST1_database/home.php BEST1 607854 119029 +HGNC:17107 BEST2 bestrophin 2 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 FLJ20132 VMD2L1 vitelliform macular dystrophy 2-like 1 Bestrophins 866 2003-12-03 2006-10-18 2006-10-18 2015-08-24 54831 ENSG00000039987 OTTHUMG00000169293 uc060ucm.1 AF440756 NM_017682 CCDS42506 Q8NFU1 "12032738|16912113" MGI:2387588 RGD:1305377 BEST2 607335 +HGNC:17105 BEST3 bestrophin 3 protein-coding gene gene with protein product Approved 12q15 12q15 "MGC40411|MGC13168" VMD2L3 vitelliform macular dystrophy 2-like 3 Bestrophins 866 2003-12-03 2006-10-18 2006-10-18 2015-01-28 144453 ENSG00000127325 OTTHUMG00000149919 uc001svg.3 AF440758 NM_152439 "CCDS8992|CCDS41810|CCDS61192|CCDS61193|CCDS73496" Q8N1M1 12032738 MGI:3580298 RGD:1305439 BEST3 607337 +HGNC:17106 BEST4 bestrophin 4 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 VMD2L2 vitelliform macular dystrophy 2-like 2 Bestrophins 866 2003-12-03 2006-10-18 2006-10-18 2015-01-28 266675 ENSG00000142959 OTTHUMG00000008488 uc001cmm.4 AF440757 NM_153274 CCDS514 Q8NFU0 "12032738|16702355" RGD:1596200 BEST4 607336 +HGNC:14562 BET1 Bet1 golgi vesicular membrane trafficking protein protein-coding gene gene with protein product Approved 7q21.3 07q21.3 hbet1 "Golgi vesicular membrane trafficking protein p18|Bet1p homolog" "Bet1 (S. cerevisiae) homolog|BET1 homolog (S. cerevisiae)|blocked early in transport 1 homolog (S. cerevisiae)" SNAREs 1124 2001-04-05 2013-03-08 2016-10-05 10282 ENSG00000105829 OTTHUMG00000023487 uc003unf.2 AF007551 NM_005868 "CCDS5635|CCDS83203" O15155 "9382863|10449330" MGI:1343104 RGD:2203 BET1 605456 +HGNC:19348 BET1L Bet1 golgi vesicular membrane trafficking protein like protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "GS15|GOLIM3" golgi integral membrane protein 3 "blocked early in transport 1 homolog (S. cerevisiae) like|blocked early in transport 1 homolog (S. cerevisiae)-like|Bet1 golgi vesicular membrane trafficking protein-like" SNAREs 1124 2002-10-08 2015-11-24 2015-11-24 51272 ENSG00000177951 OTTHUMG00000119071 uc001loe.3 AF234160 NM_016526 "CCDS7689|CCDS41582" Q9NYM9 "9242691|15004235" MGI:1913128 RGD:71051 BET1L 615417 +HGNC:51363 BET1P1 Bet1 golgi vesicular membrane trafficking protein pseudogene 1 pseudogene pseudogene Approved 7q36.1 07q36.1 2014-10-15 2014-10-15 100128542 ENSG00000241134 OTTHUMG00000157576 NG_031907 PGOHUM00000303026 +HGNC:1035 BEVI entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:1036 BEX1 brain expressed X-linked 1 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 Brain expressed X-linked family 1217 2000-03-22 2015-11-11 2015-11-11 55859 ENSG00000133169 OTTHUMG00000022708 uc004ejt.2 NM_018476 CCDS35354 Q9HBH7 16221301 MGI:1338017 BEX1 300690 +HGNC:30933 BEX2 brain expressed X-linked 2 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 DJ79P11.1 Brain expressed X-linked family 1217 2004-03-24 2016-10-05 84707 ENSG00000133134 OTTHUMG00000022095 uc004ekb.3 BC015522 NM_032621 "CCDS14505|CCDS55467" Q9BXY8 16221301 MGI:1328321 RGD:1564466 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BEX2 BEX2 300691 +HGNC:13388 BEX3 brain expressed X-linked 3 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "HGR74|Bex|NADE|DXS6984E" NGFRAP1 nerve growth factor receptor (TNFRSF16) associated protein 1 Brain expressed X-linked family 1217 2001-09-19 2016-02-15 2016-02-15 2016-02-15 27018 ENSG00000166681 OTTHUMG00000022099 uc004eki.5 AF187064 NM_014380 "CCDS14508|CCDS14509" Q00994 "10764727|16221301|2171551" MGI:1338016 RGD:3148 300361 +HGNC:25475 BEX4 brain expressed X-linked 4 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 FLJ10097 BEXL1 "brain expressed X-linked-like 1|BEX family member 4" Brain expressed X-linked family 1217 2004-03-24 2007-08-24 2015-11-11 2016-10-05 56271 ENSG00000102409 OTTHUMG00000022091 uc004ejv.5 AL035494 XM_043653 CCDS35355 Q9NWD9 "15958283|16221301" MGI:3606746 RGD:1564749 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BEX4 BEX4 300692 +HGNC:27990 BEX5 brain expressed X-linked 5 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 NGFRAP1L1 "NGFRAP1-like 1|BEX family member 5" Brain expressed X-linked family 1217 2005-01-26 2007-08-24 2015-11-11 2015-11-11 340542 ENSG00000184515 OTTHUMG00000022049 uc004eir.4 BC042818 XM_291335 CCDS35350 Q5H9J7 16221301 RGD:6488322 BEX5 300693 +HGNC:17613 BFAR bifunctional apoptosis regulator protein-coding gene gene with protein product Approved 16p13.12 16p13.12 "BAR|RNF47" "Ring finger proteins|Sterile alpha motif domain containing" "58|760" 2002-05-29 2016-10-05 51283 ENSG00000103429 OTTHUMG00000129848 uc002dco.4 AF173003 NM_016561 "CCDS10554|CCDS81947" Q9NZS9 10716992 MGI:1914368 RGD:1304791 BFAR +HGNC:1040 BFSP1 beaded filament structural protein 1 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "CP94|CP115|LIFL-H|filensin" beaded filament structural protein 1, filensin Beaded filament structural proteins 613 1998-07-23 2015-12-07 2015-12-07 631 ENSG00000125864 OTTHUMG00000031940 uc002wpo.4 Y16717 NM_001195 "CCDS13126|CCDS54448|CCDS63229" Q12934 9787085 MGI:101770 RGD:2205 BFSP1 603307 160055 HGNC:1040 +HGNC:1041 BFSP2 beaded filament structural protein 2 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "CP47|CP49|LIFL-L|phakinin" beaded filament structural protein 2, phakinin Beaded filament structural proteins 613 1999-04-14 2015-12-15 2015-12-15 8419 ENSG00000170819 OTTHUMG00000159719 uc003epn.3 U48224 XM_017007315 CCDS33859 Q13515 MGI:1333828 RGD:1591927 Human Intermediate Filament Mutation Database|http://www.interfil.org/ BFSP2 603212 119034 HGNC:1041 +HGNC:28425 BFSP2-AS1 BFSP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q22.1 03q22.1 MGC2848 2013-09-02 2013-09-02 85003 ENSG00000249993 OTTHUMG00000159721 NR_135276 12477932 +HGNC:1043 BGLAP bone gamma-carboxyglutamate protein protein-coding gene gene with protein product Approved 1q22 01q22 OCN "osteocalcin|bone gla protein" bone gamma-carboxyglutamate (gla) protein Gla domain containing 1250 1989-06-30 2016-02-23 2016-02-23 632 ENSG00000242252 OTTHUMG00000014819 uc001fnt.4 X04143 NM_199173 CCDS1134 P02818 "2785029|2394711" "MGI:88156|MGI:88157|MGI:88155" RGD:2206 BGLAP 112260 +HGNC:49033 BGLT3 beta globin locus transcript 3 (non-protein coding) non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 "LINC01083|BGL3|lncRNA-BGL3" long intergenic non-protein coding RNA 1083 Long non-coding RNAs 788 2014-06-01 2014-10-22 103344929 ENSG00000260629 OTTHUMG00000173138 "AY034471|KF110790" NR_121648 24837367 616308 lncrna-bgl3 +HGNC:1044 BGN biglycan protein-coding gene gene with protein product Approved Xq28 Xq28 "DSPG1|SLRR1A" biglycan proteoglycan Small leucine rich repeat proteoglycans 573 1989-07-18 2015-09-11 633 ENSG00000182492 OTTHUMG00000024205 uc004fhr.3 AK092954 NM_001711 CCDS14721 P21810 1612609 MGI:88158 RGD:2207 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BGN BGN 301870 461354 +HGNC:35126 BHLHA9 basic helix-loop-helix family member a9 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "bHLHa9|BHLHF42" Fingerin basic helix-loop-helix family, member a9 Basic helix-loop-helix proteins 420 2009-01-09 2015-11-18 2016-03-22 727857 ENSG00000205899 OTTHUMG00000132192 uc021tnd.2 XM_001125971 CCDS45560 Q7RTU4 "14516699|18557763" MGI:2444198 RGD:1311234 BHLHA9 615416 292035 +HGNC:22265 BHLHA15 basic helix-loop-helix family member a15 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "MIST1|bHLHa15" BHLHB8 "basic helix-loop-helix domain containing, class B, 8|basic helix-loop-helix family, member a15" Basic helix-loop-helix proteins 420 2005-07-04 2009-01-12 2015-11-18 2015-11-18 168620 ENSG00000180535 OTTHUMG00000154289 uc003upe.2 BK000276 NM_177455 CCDS5655 Q7RTS1 "14516699|18557763" MGI:891976 RGD:3091 BHLHA15 608606 +HGNC:29353 BHLHB9 basic helix-loop-helix domain containing, class B, 9 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "p60TRP|KIAA1701|GASP3" "Armadillo repeat containing|Basic helix-loop-helix proteins" "409|420" 2004-09-17 2016-10-05 80823 ENSG00000198908 OTTHUMG00000022060 uc011mrr.3 AB051488 NM_030639 CCDS14502 Q6PI77 "11214970|15034937|16221301" MGI:1917487 RGD:1303224 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BHLHB9 BHLHB9 300921 +HGNC:51373 BHLHB9P1 basic helix-loop-helix domain containing, class B, 9 pseudogene 1 pseudogene pseudogene Approved 14q31.1 14q31.1 2014-10-16 2014-10-16 100431177 ENSG00000258915 OTTHUMG00000171430 NG_021251 PGOHUM00000292736 +HGNC:11963 BHLHE22 basic helix-loop-helix family member e22 protein-coding gene gene with protein product Approved 8q12.3 08q12.3 "CAGL85|Beta3|bHLHe22" "TNRC20|BHLHB5" "trinucleotide repeat containing 20|basic helix-loop-helix domain containing, class B, 5|basic helix-loop-helix family, member e22" "Basic helix-loop-helix proteins|Trinucleotide repeat containing" "420|775" 2000-01-27 2009-01-12 2015-11-18 2016-10-05 27319 ENSG00000180828 OTTHUMG00000164386 uc003xvi.4 U80755 NM_152414 CCDS6179 Q8NFJ8 "9225980|12213201|18557763" MGI:1930001 RGD:1305451 BHLHE22 613483 +HGNC:16093 BHLHE23 basic helix-loop-helix family member e23 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "bA305P22.3|Beta4|bHLHe23" BHLHB4 "basic helix-loop-helix domain containing, class B, 4|basic helix-loop-helix family, member e23" Basic helix-loop-helix proteins 420 2001-07-17 2009-01-12 2015-11-18 2016-04-25 128408 ENSG00000125533 OTTHUMG00000032948 uc002yeb.4 AL121673 NM_080606 CCDS33507 Q8NDY6 "11863370|18557763" MGI:2153710 RGD:1559760 BHLHE23 609331 +HGNC:1046 BHLHE40 basic helix-loop-helix family member e40 protein-coding gene gene with protein product Approved 3p26.1 03p26.1 "DEC1|bHLHe40|SHARP2|Clast5" "differentially expressed in chondrocytes 1| differentiated embryo chondrocyte expressed gene 1" "STRA13|BHLHB2" "basic helix-loop-helix domain containing, class B, 2|basic helix-loop-helix family, member e40" Basic helix-loop-helix proteins 420 1999-08-25 2009-01-12 2015-11-18 2016-10-05 8553 ENSG00000134107 OTTHUMG00000119035 uc003bqf.4 AB004066 NM_003670 CCDS2565 O14503 "9240428|10449910|18557763" MGI:1097714 RGD:68439 BHLHE40 604256 +HGNC:44471 BHLHE40-AS1 BHLHE40 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p26.1 03p26.1 2012-11-01 2012-11-01 100507582 ENSG00000235831 OTTHUMG00000155242 uc032rcj.1 "AK056892|AK311646" NR_125916 +HGNC:16617 BHLHE41 basic helix-loop-helix family member e41 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "DEC2|SHARP-1|SHARP1|bHLHe41" "differentially expressed in chondrocytes 2|Enhancer-of-split and hairy-related protein 1" BHLHB3 "basic helix-loop-helix domain containing, class B, 3|basic helix-loop-helix family, member e41" Basic helix-loop-helix proteins 420 2001-09-26 2009-01-12 2015-11-18 2015-11-18 79365 ENSG00000123095 OTTHUMG00000169174 uc001rhb.4 AB044088 NM_030762 CCDS8706 Q9C0J9 "11162494|18557763" MGI:1930704 RGD:70900 BHLHE41 606200 +HGNC:44318 BHMG1 basic helix-loop-helix and HMG-box containing 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 HMGDC HMG domain containing basic helix-loop-helix and HMG box domain containing 1 2014-08-29 2016-01-26 2016-01-26 388553 ENSG00000237452 OTTHUMG00000156178 XM_011527571 CCDS82368 C9JSJ3 23044541 MGI:3647482 RGD:7528935 +HGNC:1047 BHMT betaine--homocysteine S-methyltransferase protein-coding gene gene with protein product Approved 5q14.1 05q14.1 BHMT1 betaine homocysteine methyltransferase 1997-06-09 2010-04-28 2014-11-19 635 ENSG00000145692 OTTHUMG00000108157 uc003kfu.5 BC012616 NM_001713 CCDS4046 Q93088 "8798461|9281325" MGI:1339972 RGD:621496 BHMT 602888 2.1.1.5 +HGNC:1048 BHMT2 betaine--homocysteine S-methyltransferase 2 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 1999-08-27 2010-04-28 2016-10-05 23743 ENSG00000132840 OTTHUMG00000108158 uc003kft.4 NM_017614 "CCDS4045|CCDS54871" Q9H2M3 "11087663|18230605" MGI:1891379 RGD:1359418 BHMT2 605932 2.1.1.5 +HGNC:19351 BICC1 BicC family RNA binding protein 1 protein-coding gene gene with protein product Approved 10q21.1 10q21.1 bicaudal C homolog 1 (Drosophila) Sterile alpha motif domain containing 760 2002-10-08 2014-02-03 2016-10-12 80114 ENSG00000122870 OTTHUMG00000018271 uc001jki.2 AK026129 NM_025044 CCDS31206 Q9H694 MGI:1933388 RGD:1307459 LRG_853|http://www.lrg-sequence.org/LRG/LRG_853 BICC1 614295 292175 +HGNC:1049 BICD1 BICD cargo adaptor 1 protein-coding gene gene with protein product Approved 12p11.21 12p11.21 "Bicaudal D (Drosophila) homolog 1|bicaudal D homolog 1 (Drosophila)" 1997-03-19 2016-03-29 2016-10-05 636 ENSG00000151746 OTTHUMG00000169307 uc001rku.4 U90028 NM_001714 "CCDS8726|CCDS44859" Q96G01 9367685 MGI:1101760 RGD:1309444 BICD1 602204 +HGNC:51374 BICD1P1 BICD cargo adaptor 1 pseudogene 1 pseudogene pseudogene Approved 2q33.1 02q33.1 bicaudal D homolog 1 (Drosophila) pseudogene 1 2014-10-16 2016-06-06 2016-06-06 391472 ENSG00000224346 OTTHUMG00000154576 NG_021598 PGOHUM00000298829 +HGNC:17208 BICD2 BICD cargo adaptor 2 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 KIAA0699 bicaudal D homolog 2 (Drosophila) 2003-11-14 2016-03-29 2016-10-05 23299 ENSG00000185963 OTTHUMG00000021036 uc004aso.2 AB014599 NM_015250 "CCDS6700|CCDS35064" Q8TD16 9734811 MGI:1924145 RGD:735093 BICD2 609797 365105 +HGNC:28095 BICDL1 BICD family like cargo adaptor 1 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "FLJ26450|BICDR-1" Bicaudal D related 1 CCDC64 coiled-coil domain containing 64 2006-01-24 2016-05-03 2016-05-03 2016-05-03 92558 ENSG00000135127 OTTHUMG00000169311 uc001txl.2 "U88834|AK129960" NM_207311 CCDS41845 Q6ZP65 "20360680|26822037" MGI:1922915 RGD:1310292 617002 +HGNC:33584 BICDL2 BICD family like cargo adaptor 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 CCDC64B coiled-coil domain containing 64B 2007-08-06 2016-05-03 2016-05-03 2016-05-03 146439 ENSG00000162069 OTTHUMG00000177452 uc059ptp.1 BC128602 XM_005255135 CCDS45393 A1A5D9 MGI:2388267 RGD:1306729 617003 +HGNC:1050 BID BH3 interacting domain death agonist protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "Endogenous ligands|BCL2 homology region 3 (BH3) only" "542|1277" 1998-04-20 2016-10-05 637 ENSG00000015475 OTTHUMG00000150087 uc002znd.3 AF042083 NM_197966 "CCDS13747|CCDS13748|CCDS13749" P55957 "8918887|9721221" MGI:108093 RGD:620160 BID 601997 +HGNC:1051 BIK BCL2 interacting killer protein-coding gene gene with protein product Approved 22q13.2 22q13.2 NBK natural born killer BCL2-interacting killer (apoptosis-inducing) BCL2 homology region 3 (BH3) only 1277 1996-10-26 2016-04-26 2016-10-05 638 ENSG00000100290 OTTHUMG00000150703 uc003bdk.3 U34584 NM_001197 CCDS14044 Q13323 "7478623|10591208" MGI:1206591 RGD:621547 BIK 603392 +HGNC:1052 BIN1 bridging integrator 1 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "SH3P9|AMPH2" amphiphysin II AMPHL N-BAR domain containing 1289 2000-05-19 2016-10-12 274 ENSG00000136717 OTTHUMG00000131465 uc002tns.3 U68485 NM_139343 "CCDS2137|CCDS2138|CCDS2139|CCDS2140|CCDS2141|CCDS2142|CCDS2143|CCDS42743|CCDS42744|CCDS46403|CCDS82508" O00499 "8725406|8782822|17676042" MGI:108092 RGD:621786 LRG_873|http://www.lrg-sequence.org/LRG/LRG_873 BIN1 601248 139150 +HGNC:1053 BIN2 bridging integrator 2 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 BRAP-1 N-BAR domain containing 1289 2000-05-25 2016-04-25 51411 ENSG00000110934 OTTHUMG00000185197 uc001ryg.4 AF146531 XM_005268957 "CCDS76561|CCDS8811" Q9UBW5 10903846 MGI:3611448 RGD:1306789 BIN2 605936 +HGNC:43660 BIN2P1 bridging integrator 2 pseudogene 1 pseudogene pseudogene Approved 4q21.22 04q21.22 2012-01-23 2012-01-23 2014-02-12 345258 ENSG00000234568 OTTHUMG00000160953 NG_022065 PGOHUM00000245980 +HGNC:43661 BIN2P2 bridging integrator 2 pseudogene 2 pseudogene pseudogene Approved 5q13.3 05q13.3 2012-01-23 2012-01-23 2016-07-22 644601 ENSG00000248684 OTTHUMG00000162507 NG_021885 PGOHUM00000301016 +HGNC:1054 BIN3 bridging integrator 3 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 N-BAR domain containing 1289 2000-05-25 2016-10-05 55909 ENSG00000147439 OTTHUMG00000163844 uc003xcl.5 XR_949444 CCDS47825 Q9NQY0 16524918 MGI:1929883 RGD:1308253 BIN3 606396 +HGNC:25868 BIN3-IT1 BIN3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 8p21.3 08p21.3 FLJ14107 BIN3 intronic transcript 1 (non-protein coding) 2013-06-07 2015-02-25 2015-02-25 80094 "AK024169|DN996902" NR_027715 12477932 +HGNC:590 BIRC2 baculoviral IAP repeat containing 2 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 "cIAP1|hiap-2|MIHB|RNF48|c-IAP1" "NFR2-TRAF signalling complex protein|apoptosis inhibitor 1" API1 baculoviral IAP repeat-containing 2 "Ring finger proteins|Baculoviral IAP repeat containing|Caspase recruitment domain containing" "58|419|959" 1998-06-10 2011-01-25 2016-10-05 329 ENSG00000110330 OTTHUMG00000167325 uc001pgy.5 L49431 NM_001166 "CCDS8316|CCDS58169" Q13490 "8552191|8548810" MGI:1197009 RGD:620690 BIRC2 601712 objectId:2791 +HGNC:591 BIRC3 baculoviral IAP repeat containing 3 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 "cIAP2|hiap-1|MIHC|RNF49|MALT2|c-IAP2" "apoptosis inhibitor 2|TNFR2-TRAF signaling complex protein|mammalian IAP homolog C|inhibitor of apoptosis protein 1" API2 baculoviral IAP repeat-containing 3 "Ring finger proteins|Baculoviral IAP repeat containing|Caspase recruitment domain containing" "58|419|959" 1998-06-10 2011-01-25 2016-10-05 330 ENSG00000023445 OTTHUMG00000167324 uc058guu.1 L49432 NM_001165 CCDS8315 Q13489 "8552191|8548810" MGI:1197007 RGD:621282 BIRC3 601721 201152 I32.003 objectId:2792 +HGNC:593 BIRC5 baculoviral IAP repeat containing 5 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "EPR-1|survivin" survivin variant 3 alpha API4 "apoptosis inhibitor 4|baculoviral IAP repeat-containing 5" "Baculoviral IAP repeat containing|Chromosomal passenger complex" "419|1338" 1998-06-10 2011-01-25 2016-10-04 332 ENSG00000089685 OTTHUMG00000177505 uc002jvg.4 U75285 NM_001168 "CCDS11755|CCDS32751|CCDS32752" O15392 "8106347|7947793" MGI:1203517 RGD:70499 BIRC5 603352 I32.005 objectId:2795 +HGNC:13516 BIRC6 baculoviral IAP repeat containing 6 protein-coding gene gene with protein product Approved 2p22.3 02p22.3 BRUCE apollon baculoviral IAP repeat-containing 6 "Ubiquitin conjugating enzymes E2|Baculoviral IAP repeat containing" "102|419" 2000-09-19 2011-01-25 2014-11-19 57448 ENSG00000115760 OTTHUMG00000150528 uc010ezu.4 AF265555 NM_016252 CCDS33175 Q9NR09 10544019 MGI:1276108 RGD:1307247 BIRC6 605638 I32.006 objectId:2796 +HGNC:40641 BIRC6-AS1 BIRC6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p22.3 02p22.3 BIRC6 antisense RNA 1 (non-protein coding) 2012-01-23 2012-08-15 2014-11-19 100874009 ENSG00000230046 OTTHUMG00000152106 uc061hxx.1 22196729 +HGNC:50490 BIRC6-AS2 BIRC6 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 2p22.3 02p22.3 megamind Long non-coding RNAs 788 2014-05-05 2014-10-23 103752586 ENSG00000279897 OTTHUMG00000189406 "AA883483|BX093813" NR_125793 22196729 megamind +HGNC:13702 BIRC7 baculoviral IAP repeat containing 7 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "mliap|ML-IAP|KIAP|RNF50" "melanoma inhibitor of apoptosis protein|kidney inhibitor of apoptosis protein|livin inhibitor-of-apoptosis|livin" baculoviral IAP repeat-containing 7 "Ring finger proteins|Baculoviral IAP repeat containing" "58|419" 2001-03-06 2011-01-25 2016-10-05 79444 ENSG00000101197 OTTHUMG00000032957 uc002yej.4 AF301009 NM_139317 "CCDS13512|CCDS13513" Q96CA5 "11024045|11162435" MGI:2676458 RGD:1562883 BIRC7 605737 I32.007 objectId:2794 +HGNC:14878 BIRC8 baculoviral IAP repeat containing 8 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "ILP-2|hILP2" "IAP-like protein 2|inhibitor of apoptosis-like protein 2" baculoviral IAP repeat-containing 8 Baculoviral IAP repeat containing 419 2001-08-23 2011-01-25 2016-01-15 112401 ENSG00000163098 OTTHUMG00000182919 uc002qbk.4 AF164682 NM_033341 CCDS12863 Q96P09 11390657 BIRC8 I32.008 objectId:2797 +HGNC:51290 BISPR BST2 interferon stimulated positive regulator (non-protein coding) non-coding RNA RNA, long non-coding Approved 19p13.11 19p13.11 Long non-coding RNAs 788 2015-02-04 2016-10-04 105221694 ENSG00000282851 OTTHUMG00000182856 NR_130765 25620967 +HGNC:16034 BIVM basic, immunoglobulin-like variable motif containing protein-coding gene gene with protein product Approved 13q33.1 13q33.1 FLJ20159 2001-08-16 2015-08-24 54841 ENSG00000134897 OTTHUMG00000017309 uc001vps.4 AF411385 NM_017693 "CCDS9505|CCDS53879" Q86UB2 12036287 MGI:2179809 RGD:1311888 BIVM +HGNC:43690 BIVM-ERCC5 BIVM-ERCC5 readthrough other readthrough Approved 13q33.1 13q33.1 2013-05-10 2013-05-10 100533467 ENSG00000270181 OTTHUMG00000184166 AB209312 NM_001204425 +HGNC:48597 BLACAT1 bladder cancer associated transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 "linc-UBC1|LINC00912|onco-lncRNA-30" "long intergenic noncoding RNA up-regulated in bladder cancer|long intergenic non-protein coding RNA 912" Long non-coding RNAs 788 2013-05-21 2015-07-29 101669762 ENSG00000281406 OTTHUMG00000189561 BX640973 NR_103783 23688781 615480 +HGNC:20484 BLACE B-cell acute lymphoblastic leukemia expressed other unknown Approved 7q36.3 07q36.3 2003-03-18 2016-10-05 338436 ENSG00000204960 OTTHUMG00000151351 uc033aqq.2 AY166699 NR_103545 A4D250 14667812 608450 +HGNC:1055 BLCAP bladder cancer associated protein protein-coding gene gene with protein product Approved 20q11.23 20q11.23 BC10 2000-05-26 2016-05-05 10904 ENSG00000166619 OTTHUMG00000032419 uc002xhc.3 AF053470 NM_006698 CCDS13295 P62952 "10197429|26986503|17031575" MGI:1858907 RGD:621666 BLCAP 613110 +HGNC:33495 BLID BH3-like motif containing, cell death inducer protein-coding gene gene with protein product Approved 11q24.1 11q24.1 BRCC2 breast cancer cell 2 2007-06-22 2014-11-19 414899 ENSG00000259571 OTTHUMG00000166060 uc001pyf.3 AF303179 NM_001001786 CCDS31693 Q8IZY5 "15069058|17220890" BLID 608853 +HGNC:1057 BLK BLK proto-oncogene, Src family tyrosine kinase protein-coding gene gene with protein product Approved 8p23.1 08p23.1 MGC10442 B lymphoid tyrosine kinase SH2 domain containing 741 1995-05-17 2014-06-25 2016-10-05 640 ENSG00000136573 OTTHUMG00000090729 uc003wty.4 BC004473 XM_011543825 "CCDS5982|CCDS83251" P51451 7845672 MGI:88169 RGD:1308859 BLK 191305 227384 objectId:1940 +HGNC:1058 BLM Bloom syndrome RecQ like helicase protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "BS|RECQL3|RECQ2" Bloom syndrome RecQ like helicases 1049 1992-11-06 2016-02-05 2016-10-12 641 ENSG00000197299 OTTHUMG00000149834 uc002bpr.5 U39817 XM_011521882 "CCDS10363|CCDS73782" P54132 9388193 MGI:1328362 RGD:1308810 "BLMbase: Mutation registry for Bloom Syndrome|http://structure.bmc.lu.se/idbase/BLMbase/|LRG_20|http://www.lrg-sequence.org/LRG/LRG_20" BLM 604610 123406 +HGNC:1059 BLMH bleomycin hydrolase protein-coding gene gene with protein product Approved 17q11.2 17q11.2 BH 1998-03-11 2016-03-23 642 ENSG00000108578 OTTHUMG00000179756 uc002hez.3 X92106 NM_000386 CCDS32604 Q13867 "9407121|9331073" MGI:1345186 RGD:1304668 BLMH 602403 365648 C01.084 3.4.22.40 +HGNC:14211 BLNK B-cell linker protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "SLP65|Ly57|SLP-65|BLNK-s|BASH|bca" "B-cell adapter containing a SH2 domain protein|B-cell activation|Src homology [SH2] domain-containing leukocyte protein of 65 kD|B cell adaptor containing SH2 domain" SH2 domain containing 741 2001-07-16 2016-10-12 29760 ENSG00000095585 OTTHUMG00000018827 uc001kls.5 AF068180 NM_013314 "CCDS7446|CCDS44464|CCDS58091|CCDS73171" Q8WV28 "9697839|10583958" MGI:96878 RGD:1561933 "BLNKbase: Mutation registry for BLNK deficiency|http://structure.bmc.lu.se/idbase/BLNKbase/|LRG_21|http://www.lrg-sequence.org/LRG/LRG_21" BLNK 604515 236971 +HGNC:4200 BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "BLOS1|BORCS1" "GCN5 (general control of amino-acid synthesis, yeast, homolog)-like 1|BLOC-1 Subunit 1|Biogenesis of Lysosome-related Organelles complex-1 Subunit 1" GCN5L1 GCN5 general control of amino-acid synthesis 5-like 1 (yeast) "Biogenesis of lysosomal organelles complex 1 |BLOC-1 related complex" "452|1048" 1995-11-15 2004-05-26 2016-01-15 2016-10-05 2647 ENSG00000135441 OTTHUMG00000169962 uc001shi.5 S82447 NM_001487 CCDS8889 P78537 "8646881|15102850" MGI:1195276 RGD:1307564 BLOC1S1 601444 +HGNC:20984 BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "MGC10120|FLJ30135|BLOS2|BORCS2" "centrosome protein oncogene|Biogenesis of Lysosome-related Organelles complex-1 Subunit 2|BLOC-1 subunit 2" "Biogenesis of lysosomal organelles complex 1 |BLOC-1 related complex" "452|1048" 2004-05-24 2016-01-15 2016-01-15 282991 ENSG00000196072 OTTHUMG00000018908 uc001kqw.3 AK054697 NM_173809 "CCDS7490|CCDS73179" Q6QNY1 "11483580|15102850" MGI:1920939 RGD:1306551 BLOC1S2 609768 +HGNC:51427 BLOC1S2P1 biogenesis of lysosomal organelles complex-1, subunit 2 pseudogene 1 pseudogene pseudogene Approved Xq11.2 Xq11.2 2014-11-21 2014-11-21 100131924 ENSG00000236982 OTTHUMG00000021711 NG_030157 PGOHUM00000304665 +HGNC:20914 BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "BLOS3|HPS8" "BLOC-1 subunit 3|Biogenesis of Lysosome-related Organelles complex-1 Subunit 3|Hermansky-Pudlak syndrome 8" Biogenesis of lysosomal organelles complex 1 452 2004-05-24 2016-01-15 2016-10-12 388552 ENSG00000189114 OTTHUMG00000181776 uc002pax.5 AY531266 NM_212550 CCDS12656 Q6QNY0 15102850 MGI:2678952 RGD:1591724 LRG_546|http://www.lrg-sequence.org/LRG/LRG_546 BLOC1S3 609762 119045 +HGNC:24206 BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "FLJ11230|BCAS4L" CNO cappuccino homolog (mouse) Biogenesis of lysosomal organelles complex 1 452 2005-03-03 2012-08-01 2016-01-15 2016-01-15 55330 ENSG00000186222 OTTHUMG00000125510 uc003gjp.2 BC001818 NM_018366 CCDS3393 Q9NUP1 "12576321|11110696" MGI:1929230 RGD:1306037 605695 +HGNC:18561 BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 "MU|dJ303A1.3" MUTED muted homolog (mouse) Biogenesis of lysosomal organelles complex 1 452 2004-01-16 2012-08-01 2016-01-15 2016-01-15 63915 ENSG00000188428 OTTHUMG00000014220 uc003mxy.3 AF426434 NM_201280 "CCDS4506|CCDS75394" Q8TDH9 11912185 MGI:2178598 RGD:1306846 607289 +HGNC:42001 BLOC1S5-TXNDC5 BLOC1S5-TXNDC5 readthrough (NMD candidate) other readthrough Approved 6p24.3 06p24.3 MUTED-TXNDC5 MUTED-TXNDC5 readthrough (non-protein coding) 2011-05-31 2012-08-01 2013-05-09 2014-11-19 100526836 ENSG00000259040 OTTHUMG00000171453 uc063lrt.1 NR_037616.1 +HGNC:8549 BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 HPS9 "PA|PLDN" "pallid (mouse) homolog, pallidin|pallidin homolog (mouse)" Biogenesis of lysosomal organelles complex 1 452 2000-01-21 2012-08-01 2016-01-15 2016-10-12 26258 ENSG00000104164 OTTHUMG00000131477 uc001zvq.4 AF080470 NM_012388 "CCDS10126|CCDS81878" Q9UL45 10610180 MGI:1927580 RGD:1310208 LRG_883|http://www.lrg-sequence.org/LRG/LRG_883 604310 280669 +HGNC:1062 BLVRA biliverdin reductase A protein-coding gene gene with protein product Approved 7p13 07p13 BLVR 2001-06-22 2015-08-24 644 ENSG00000106605 OTTHUMG00000128953 uc003tir.4 BC008456 NM_000712 CCDS5472 P53004 MGI:88170 RGD:620721 BLVRA 109750 281690 1.3.1.24 +HGNC:1063 BLVRB biliverdin reductase B protein-coding gene gene with protein product Approved 19q13.2 19q13.2 SDR43U1 "short chain dehydrogenase/reductase family 43U, member 1|(flavin reductase (NADPH))" FLR "Flavin reductase|biliverdin reductase B (flavin reductase (NADPH))" Short chain dehydrogenase/reductase superfamily 743 1995-04-13 2014-11-21 2016-10-05 645 ENSG00000090013 OTTHUMG00000182593 uc002onw.3 D26308 NM_000713 CCDS33029 P30043 "7656592|19027726" MGI:2385271 RGD:1306080 BLVRB 600941 "1.3.1.24|1.5.1.30" +HGNC:1064 BLYM entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:1065 BLZF1 basic leucine zipper nuclear factor 1 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 JEM-1 1999-06-21 2008-08-01 2016-10-05 8548 ENSG00000117475 OTTHUMG00000035453 uc001gfy.4 U79751 NM_003666 "CCDS1278|CCDS81397" Q9H2G9 9129147 MGI:1201607 RGD:1562452 BLZF1 608692 +HGNC:20049 BLZF2P basic leucine zipper nuclear factor 2 pseudogene pseudogene pseudogene Approved 14q24.1 14q24.1 2003-01-13 2014-11-19 317729 ENSG00000258565 OTTHUMG00000171760 NG_002462 PGOHUM00000247841 +HGNC:24132 BMF Bcl2 modifying factor protein-coding gene gene with protein product Approved 15q15.1 15q15.1 FLJ00065 BCL2 homology region 3 (BH3) only 1277 2004-01-16 2016-10-05 90427 ENSG00000104081 OTTHUMG00000129875 uc001zkw.6 BC060783 NM_033503 "CCDS10052|CCDS32196|CCDS45223" Q96LC9 11546872 MGI:2176433 RGD:628658 BMF 606266 +HGNC:1066 BMI1 BMI1 proto-oncogene, polycomb ring finger protein-coding gene gene with protein product Approved 10p12.2 10p12.2 RNF51 PCGF4 "polycomb group ring finger 4|B lymphoma Mo-MLV insertion region 1 homolog (mouse)" "Ring finger proteins|Polycomb group ring fingers" "58|61" 1994-01-05 2006-04-26 2014-06-26 2016-10-05 648 ENSG00000168283 OTTHUMG00000017807 uc001irh.4 BC011652 NM_005180 CCDS7138 P35226 8268912 MGI:88174 RGD:1307403 BMI1 164831 +HGNC:51428 BMI1P1 BMI1 proto-oncogene, polycomb ring finger pseudogene 1 pseudogene pseudogene Approved Xq12 Xq12 2014-11-21 2014-11-21 100127902 ENSG00000234201 OTTHUMG00000021739 NG_011910 PGOHUM00000304678 +HGNC:23827 BMIQ1 body mass index QTL 1 phenotype phenotype only Approved 7q32.3 07q32.3 body mass index quantitative trait 1 2004-01-07 2005-04-08 2011-02-10 170815 11713718 606641 +HGNC:23828 BMIQ2 body mass index QTL 2 phenotype phenotype only Approved 13q14 13q14 body mass index quantitative trait 2 2004-01-07 2005-04-08 2011-02-10 192149 11713718 606643 +HGNC:23829 BMIQ3 body mass index QTL 3 phenotype phenotype only Approved 6q23-q25 06q23-q25 body mass index quantitative trait 3 2004-01-07 2005-04-08 2011-02-10 337895 11713718 607446 +HGNC:31117 BMIQ5 body mass index QTL 5 phenotype phenotype only Approved 16p13 16p13 2005-04-08 2011-02-10 449016 12774034 608558 +HGNC:22120 BMIQ6 body mass index QTL 6 phenotype phenotype only Approved 20pter-p11.2 20pter-p11.2 2005-04-08 2011-02-10 449017 12774034 608559 +HGNC:1067 BMP1 bone morphogenetic protein 1 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 procollagen C-endopeptidase PCOLC procollagen C-endopeptidase "Bone morphogenetic proteins|Astacins" "455|894" 1990-06-11 2004-08-09 2016-10-05 649 ENSG00000168487 OTTHUMG00000097761 uc003xbg.5 NM_006132 "CCDS6026|CCDS34856" P13497 2004778 MGI:88176 RGD:620739 BMP1 112264 287069 M12.005 objectId:2333 3.4.24.19 +HGNC:1069 BMP2 bone morphogenetic protein 2 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 BMP2A "Bone morphogenetic proteins|Endogenous ligands" "455|542" 1990-06-11 2016-10-05 650 ENSG00000125845 OTTHUMG00000031833 uc002wmu.2 XM_011529323 CCDS13099 P12643 2376592 MGI:88177 RGD:2211 BMP2 112261 179459 +HGNC:18041 BMP2K BMP2 inducible kinase protein-coding gene gene with protein product Approved 4q21.21 04q21.21 "DKFZp434K0614|BIKe" 2003-07-21 2015-09-11 55589 ENSG00000138756 OTTHUMG00000160900 uc003hlj.4 AB015331 NM_017593 "CCDS34019|CCDS47083" Q9NSY1 MGI:2155456 RGD:1564828 BMP2K objectId:1941 +HGNC:17080 BMP2KL BMP2 inducible kinase-like, pseudogene pseudogene pseudogene Approved Xq13.2 Xq13.2 BMP2 inducible kinase-like 2004-08-16 2014-04-01 2014-11-19 347359 ENSG00000204113 OTTHUMG00000021848 XM_293293 Q5H9B9 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BMP2KL BMP2KL PGOHUM00000262171 +HGNC:1070 BMP3 bone morphogenetic protein 3 protein-coding gene gene with protein product Approved 4q21.21 04q21.21 osteogenin bone morphogenetic protein 3 (osteogenic) Bone morphogenetic proteins 455 1990-06-11 2008-05-22 2016-10-05 651 ENSG00000152785 OTTHUMG00000130292 uc003hmg.4 M22491 NM_001201 CCDS3588 P12645 MGI:88179 RGD:2212 BMP3 112263 +HGNC:1071 BMP4 bone morphogenetic protein 4 protein-coding gene gene with protein product Approved 14q22.2 14q22.2 BMP2B "Bone morphogenetic proteins|Endogenous ligands" "455|542" 1990-06-11 2016-10-05 652 ENSG00000125378 OTTHUMG00000140303 uc001xan.6 AF035427 NM_001202 CCDS9715 P12644 "7558046|7579580" MGI:88180 RGD:2213 BMP4 112262 140047 +HGNC:1072 BMP5 bone morphogenetic protein 5 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "Bone morphogenetic proteins|Endogenous ligands" "455|542" 1991-06-05 2015-08-24 653 ENSG00000112175 OTTHUMG00000014903 uc003pcq.4 XM_011514816 CCDS4958 P22003 "1427904|11580864" MGI:88181 RGD:1305979 BMP5 112265 +HGNC:1073 BMP6 bone morphogenetic protein 6 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 VGR1 VGR vegetal related growth factor (TGFB-related) "Bone morphogenetic proteins|Endogenous ligands" "455|542" 1991-06-05 2003-10-06 2016-10-05 654 ENSG00000153162 OTTHUMG00000014217 uc003mxu.5 AF083030 NM_001718 CCDS4503 P22004 "1427904|1453478" MGI:88182 RGD:2214 BMP6 112266 456982 +HGNC:19329 BMP6P1 bone morphogenetic protein 6 pseudogene 1 pseudogene pseudogene Approved 22q11.22 22q11.22 2002-10-03 2016-10-05 266700 ENSG00000236323 OTTHUMG00000150994 NG_000002 PGOHUM00000246447 +HGNC:1074 BMP7 bone morphogenetic protein 7 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 OP-1 osteogenic protein 1 "Bone morphogenetic proteins|Endogenous ligands" "455|542" 1991-06-05 2008-05-22 2016-10-05 655 ENSG00000101144 OTTHUMG00000032812 uc010gip.2 NM_001719 CCDS13455 P18075 1427904 MGI:103302 RGD:620743 BMP7 112267 +HGNC:40096 BMP7-AS1 BMP7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.31 20q13.31 2014-08-08 2014-11-19 102723590 ENSG00000235032 OTTHUMG00000032810 NR_110631 +HGNC:21650 BMP8A bone morphogenetic protein 8a protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "Bone morphogenetic proteins|Endogenous ligands" "455|542" 2003-10-17 2016-10-05 353500 ENSG00000183682 OTTHUMG00000008394 uc001cdi.4 AY303954 NM_181809 CCDS437 Q7Z5Y6 MGI:104515 RGD:1585858 BMP8A +HGNC:1075 BMP8B bone morphogenetic protein 8b protein-coding gene gene with protein product Approved 1p34.2 01p34.2 OP-2 osteogenic protein 2 BMP8 bone morphogenetic protein 8 (osteogenic protein 2) "Bone morphogenetic proteins|Endogenous ligands" "455|542" 1995-11-02 2003-10-22 2008-05-22 2016-10-05 656 ENSG00000116985 OTTHUMG00000009247 uc001cdz.2 BC023526 NM_001720 CCDS444 P34820 "1460021|9070944" MGI:107335 BMP8B 602284 +HGNC:20869 BMP10 bone morphogenetic protein 10 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "Bone morphogenetic proteins|Endogenous ligands" "455|542" 2003-04-16 2016-10-12 27302 ENSG00000163217 OTTHUMG00000129573 uc002sez.1 AF101441 NM_014482 CCDS1890 O95393 10072785 MGI:1338820 RGD:1562986 LRG_403|http://www.lrg-sequence.org/LRG/LRG_403 BMP10 608748 +HGNC:1068 BMP15 bone morphogenetic protein 15 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 GDF9B Bone morphogenetic proteins 455 1999-01-29 2016-10-05 9210 ENSG00000130385 OTTHUMG00000021525 uc011mnw.3 AF082349 NM_005448 CCDS14334 O95972 9849956 MGI:1316745 RGD:70990 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BMP15 BMP15 300247 158386 +HGNC:24154 BMPER BMP binding endothelial regulator protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "Cv2|CRIM3" crossveinless-2 2005-07-25 2014-11-19 168667 ENSG00000164619 OTTHUMG00000128675 uc011kap.2 NM_133468 CCDS5442 Q8N8U9 "12897139|14766204" MGI:1920480 RGD:1563373 BMPER 608699 244395 +HGNC:1076 BMPR1A bone morphogenetic protein receptor type 1A protein-coding gene gene with protein product Approved 10q23.2 10q23.2 "ALK3|CD292" ACVRLK3 bone morphogenetic protein receptor, type IA "Type 1 receptor serine/threonine kinases|CD molecules" "345|471" 1994-12-12 2016-01-26 2016-10-12 657 ENSG00000107779 OTTHUMG00000018657 uc001kdy.4 BC028383 NM_004329 CCDS7378 P36894 "8397373|9730621" MGI:1338938 RGD:70989 LRG_298|http://www.lrg-sequence.org/LRG/LRG_298 BMPR1A 601299 119048 objectId:1786 CD292 +HGNC:21742 BMPR1APS1 bone morphogenetic protein receptor type 1A pseudogene 1 pseudogene pseudogene Approved 6q22.33 06q22.33 bone morphogenetic protein receptor, type IA pseudogene 1 2003-07-21 2016-01-26 2016-01-26 100421515 ENSG00000219642 OTTHUMG00000015544 NG_025866 10051328 PGOHUM00000243360 +HGNC:21743 BMPR1APS2 bone morphogenetic protein receptor type 1A pseudogene 2 pseudogene pseudogene Approved 11q24.1 11q24.1 bone morphogenetic protein receptor, type IA pseudogene 2 2003-07-21 2016-01-26 2016-01-26 100533800 ENSG00000232460 OTTHUMG00000166069 NG_028805 PGOHUM00000242511 +HGNC:1077 BMPR1B bone morphogenetic protein receptor type 1B protein-coding gene gene with protein product Approved 4q22.3 04q22.3 "ALK6|CDw293" bone morphogenetic protein receptor, type IB "Type 1 receptor serine/threonine kinases|CD molecules" "345|471" 1997-03-19 2016-01-26 2016-10-05 658 ENSG00000138696 OTTHUMG00000130991 uc003htm.5 D89675 NM_001203 "CCDS3642|CCDS58919" O00238 "8140412|9730621" MGI:107191 RGD:1595863 BMPR1B 603248 119053 objectId:1789 CDw293 +HGNC:50864 BMPR1B-AS1 BMPR1B antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4q22.3 04q22.3 TCONS_00007797 2014-07-14 2014-07-14 100507012 ENSG00000249599 OTTHUMG00000161193 NR_121610 +HGNC:1078 BMPR2 bone morphogenetic protein receptor type 2 protein-coding gene gene with protein product Approved 2q33.1-q33.2 02q33.1-q33.2 "BRK-3|T-ALK|BMPR3|BMPR-II" PPH1 "primary pulmonary hypertension 1|bone morphogenetic protein receptor, type II (serine/threonine kinase)|bone morphogenetic protein receptor type II" Type 2 receptor serine/threonine kinases 346 1997-03-19 2016-04-27 2016-10-12 659 ENSG00000204217 OTTHUMG00000133617 uc002uzf.5 Z48923 NM_001204 CCDS33361 Q13873 7791754 MGI:1095407 RGD:71082 LRG_712|http://www.lrg-sequence.org/LRG/LRG_712 BMPR2 600799 119057 objectId:1794 +HGNC:23505 BMS1 BMS1, ribosome biogenesis factor protein-coding gene gene with protein product Approved 10q11.21 10q11.21 KIAA0187 BMS1L "BMS1-like, ribosome assembly protein (yeast)|BMS1 homolog, ribosome assembly protein (yeast)" 2003-11-21 2007-03-20 2015-11-27 2015-11-27 9790 ENSG00000165733 OTTHUMG00000018020 uc001jaj.4 BC043345 NM_014753 CCDS7199 Q14692 "11779832|23785305" MGI:2446132 RGD:1308043 BMS1 611448 357791 +HGNC:23649 BMS1P1 BMS1, ribosome biogenesis factor pseudogene 1 pseudogene pseudogene Approved 10q11.22 10q11.22 "bA556L1.3|OTTHUMG00000018098" BMS1LP1 "BMS1L pseudogene 1|BMS1 pseudogene 1" 2004-05-27 2007-03-20 2015-11-27 2015-11-27 728053 ENSG00000204177 OTTHUMG00000018098 PGOHUM00000258476 +HGNC:23650 BMS1P2 BMS1, ribosome biogenesis factor pseudogene 2 pseudogene pseudogene Approved 10q11.22 10q11.22 "bA144G6.1|OTTHUMG00000018113" BMS1LP2 "BMS1L pseudogene 2|BMS1 pseudogene 2" 2004-05-27 2007-03-20 2015-11-27 2015-11-27 414216 ENSG00000251079 OTTHUMG00000018113 PGOHUM00000238461 +HGNC:23651 BMS1P3 BMS1, ribosome biogenesis factor pseudogene 3 pseudogene pseudogene Approved 10q23.2 10q23.2 "bA96C23.1|OTTHUMG00000018662" BMS1LP3 "BMS1L pseudogene 3|BMS1 pseudogene 3" 2004-05-27 2007-03-20 2015-11-27 2015-11-27 414217 ENSG00000240089 OTTHUMG00000018662 NG_006111 PGOHUM00000290228 +HGNC:23652 BMS1P4 BMS1, ribosome biogenesis factor pseudogene 4 pseudogene pseudogene Approved 10q22.2 10q22.2 OTTHUMG00000018478 BMS1LP4 "BMS1L pseudogene 4|BMS1 pseudogene 4" 2004-05-27 2007-03-20 2015-11-27 2015-11-27 729096 ENSG00000242338 OTTHUMG00000018478 uc001juv.3 NR_026592 PGOHUM00000289903 +HGNC:23653 BMS1P5 BMS1, ribosome biogenesis factor pseudogene 5 pseudogene pseudogene Approved 10q11.22 10q11.22 "bA508M1.1|OTTHUMG00000018157" BMS1LP5 "BMS1L pseudogene 5|BMS1 pseudogene 5" 2004-05-27 2007-03-20 2015-11-27 2015-11-27 399761 OTTHUMG00000018157 NR_003611 PGOHUM00000258482 +HGNC:23654 BMS1P6 BMS1, ribosome biogenesis factor pseudogene 6 pseudogene pseudogene Approved 10q11.22 10q11.22 "bA302K17.2|OTTHUMG00000018142" BMS1LP6 "BMS1L pseudogene 6|BMS1 pseudogene 6" 2004-05-27 2007-03-20 2015-11-27 2015-11-27 642826 OTTHUMG00000018142 NR_024495 PGOHUM00000238778 +HGNC:23655 BMS1P7 BMS1, ribosome biogenesis factor pseudogene 7 pseudogene pseudogene Approved 10q11.22 10q11.22 "bA164N7.1|OTTHUMG00000018163" BMS1LP7 "BMS1L pseudogene 7|BMS1 pseudogene 7" 2004-05-27 2007-03-20 2015-11-27 2015-11-27 100133265 ENSG00000270025 OTTHUMG00000018163 NG_011418 PGOHUM00000289854 +HGNC:49152 BMS1P8 BMS1, ribosome biogenesis factor pseudogene 8 pseudogene pseudogene Approved 16p11.2 16p11.2 BMS1 pseudogene 8 2013-09-20 2015-11-27 2015-11-27 653557 ENSG00000260518 OTTHUMG00000176352 NG_011420 PGOHUM00000293548 +HGNC:49155 BMS1P9 BMS1, ribosome biogenesis factor pseudogene 9 pseudogene pseudogene Approved 9q13 09q13 BMS1 pseudogene 9 2013-09-20 2015-11-27 2015-11-27 653458 ENSG00000198312 OTTHUMG00000034439 NG_011528 PGOHUM00000304257 +HGNC:49154 BMS1P10 BMS1, ribosome biogenesis factor pseudogene 10 pseudogene pseudogene Approved 9q13 09q13 BMS1 pseudogene 10 2013-09-20 2015-11-27 2015-11-27 728611 ENSG00000237238 OTTHUMG00000067277 NG_011422 PGOHUM00000303866 +HGNC:49156 BMS1P11 BMS1, ribosome biogenesis factor pseudogene 11 pseudogene pseudogene Approved 9q13 09q13 BMS1 pseudogene 11 2013-09-20 2015-11-27 2015-11-27 644632 ENSG00000225883 OTTHUMG00000066928 NG_011503 PGOHUM00000303885 +HGNC:49157 BMS1P12 BMS1, ribosome biogenesis factor pseudogene 12 pseudogene pseudogene Approved 9q21.11 09q21.11 BMS1 pseudogene 12 2013-09-20 2015-11-27 2015-11-27 644684 ENSG00000224599 OTTHUMG00000067343 NG_030262 PGOHUM00000303893 +HGNC:49158 BMS1P13 BMS1, ribosome biogenesis factor pseudogene 13 pseudogene pseudogene Approved 9q21.11 09q21.11 BMS1 pseudogene 13 2013-09-20 2015-11-27 2015-11-27 644716 ENSG00000231701 OTTHUMG00000067356 NG_005577 PGOHUM00000304291 +HGNC:49159 BMS1P14 BMS1, ribosome biogenesis factor pseudogene 14 pseudogene pseudogene Approved 9p12 09p12 BMS1 pseudogene 14 2013-09-20 2015-11-27 2015-11-27 728034 ENSG00000276500 OTTHUMG00000066753 NG_034105 PGOHUM00000250524 +HGNC:49160 BMS1P15 BMS1, ribosome biogenesis factor pseudogene 15 pseudogene pseudogene Approved 15q11.1 15q11.1 BMS1 pseudogene 15 2013-09-20 2015-11-27 2015-11-27 642311 ENSG00000258780 OTTHUMG00000171658 NG_011423 PGOHUM00000293101 +HGNC:49161 BMS1P16 BMS1, ribosome biogenesis factor pseudogene 16 pseudogene pseudogene Approved 15q11.2 15q11.2 BMS1 pseudogene 16 2013-09-20 2015-11-27 2015-11-27 727914 ENSG00000258684 OTTHUMG00000171714 NG_011424 PGOHUM00000293111 +HGNC:49162 BMS1P17 BMS1, ribosome biogenesis factor pseudogene 17 pseudogene pseudogene Approved 14q11.2 14q11.2 BMS1 pseudogene 17 2013-09-20 2015-11-27 2015-11-27 101101776 ENSG00000228294 OTTHUMG00000150377 NR_073460 PGOHUM00000292552 +HGNC:19436 BMS1P18 BMS1, ribosome biogenesis factor pseudogene 18 pseudogene pseudogene Approved 14q11.2 14q11.2 "C14orf17|LINC00516" "chromosome 14 open reading frame 17|long intergenic non-protein coding RNA 516|BMS1 pseudogene 18" 2004-06-11 2013-09-20 2015-11-27 2015-11-27 414763 OTTHUMG00000170508 BC040855 NR_073459 PGOHUM00000292266 +HGNC:49163 BMS1P19 BMS1, ribosome biogenesis factor pseudogene 19 pseudogene pseudogene Approved 2q13 02q13 BMS1 pseudogene 19 2013-09-20 2015-11-27 2015-11-27 100131577 ENSG00000231099 OTTHUMG00000154976 NG_011527 PGOHUM00000298623 +HGNC:49153 BMS1P20 BMS1, ribosome biogenesis factor pseudogene 20 pseudogene pseudogene Approved 22q11.22 22q11.22 BMS1 pseudogene 20 2013-09-20 2015-11-27 2015-11-27 96610 ENSG00000236850 OTTHUMG00000186398 NR_027293 PGOHUM00000297672 +HGNC:51604 BMS1P21 BMS1, ribosome biogenesis factor pseudogene 21 pseudogene pseudogene Approved 10q22.3 10q22.3 BMS1 pseudogene 21 2015-03-16 2015-11-27 2015-11-27 100288974 ENSG00000283101 OTTHUMG00000191473 NR_033857 +HGNC:51603 BMS1P22 BMS1, ribosome biogenesis factor pseudogene 22 pseudogene pseudogene Approved 22q11.1 22q11.1 BMS1 pseudogene 22 2015-03-16 2015-11-27 2015-11-27 106480334 ENSG00000232775 OTTHUMG00000140198 NR_133911 PGOHUM00000297421 +HGNC:26475 BMT2 base methyltransferase of 25S rRNA 2 homolog protein-coding gene gene with protein product Approved 7q31.1 07q31.1 "DKFZp762M126|FLJ31818" hypothetical protein FLJ31818 C7orf60 chromosome 7 open reading frame 60 2008-06-19 2016-04-22 2016-04-22 2016-04-22 154743 ENSG00000164603 OTTHUMG00000155233 uc003vgo.2 NM_152556 CCDS43634 Q1RMZ1 23558746 MGI:2141466 RGD:1588441 +HGNC:1079 BMX BMX non-receptor tyrosine kinase protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "ETK|PSCTK3" BTK-like on X chromosome "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 1995-07-11 2015-08-26 660 ENSG00000102010 OTTHUMG00000021180 uc004cww.3 AF045459 NM_001721 CCDS14168 P51813 7970727 MGI:1101778 RGD:1565643 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BMX BMX 300101 objectId:1942 +HGNC:1081 BNC1 basonuclin 1 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 HsT19447 BNC basonuclin Zinc fingers C2H2-type 28 1997-09-12 2004-05-04 2004-04-30 2016-10-05 646 ENSG00000169594 OTTHUMG00000147362 uc002bjt.2 L03427 NM_001717 "CCDS10324|CCDS73771" Q01954 1332044 MGI:1097164 RGD:1309042 BNC1 601930 +HGNC:30988 BNC2 basonuclin 2 protein-coding gene gene with protein product Approved 9p22.3-p22.2 09p22.3-p22.2 "BSN2|FLJ20043" Zinc fingers C2H2-type 28 2004-04-29 2016-10-11 54796 ENSG00000173068 OTTHUMG00000019593 uc003zml.4 AK092247 NM_017637 CCDS6482 Q6ZN30 14702039 MGI:2443805 RGD:1310694 BNC2 608669 +HGNC:1082 BNIP1 BCL2 interacting protein 1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "Nip1|SEC20" BCL2/adenovirus E1B 19kDa interacting protein 1 "SNAREs|BCL2 homology region 3 (BH3) only" "1124|1277" 1997-03-19 2016-06-21 2016-06-21 662 ENSG00000113734 OTTHUMG00000130521 uc003mcj.5 AF083957 NM_013979 "CCDS4384|CCDS4385|CCDS4386|CCDS43400" Q12981 "7954800|15272311" MGI:109328 RGD:620799 BNIP1 603291 +HGNC:1083 BNIP2 BCL2 interacting protein 2 protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "Nip2|BNIP-2" BCL2/adenovirus E1B 19kDa interacting protein 2 "BCL2 family|BCH domain containing " "1057|1299" 1997-03-19 2016-06-21 2016-10-05 663 ENSG00000140299 OTTHUMG00000132727 uc059jvv.1 U15173 NM_004330 "CCDS10174|CCDS81889" Q12982 7954800 MGI:109327 RGD:1308944 BNIP2 603292 +HGNC:1084 BNIP3 BCL2 interacting protein 3 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 Nip3 BCL2/adenovirus E1B 19kDa interacting protein 3 BCL2 homology region 3 (BH3) only 1277 1997-03-19 2016-06-21 2016-06-21 664 ENSG00000176171 OTTHUMG00000019278 uc001lkv.3 U15174 NM_004052 CCDS7663 Q12983 7954800 MGI:109326 RGD:620800 BNIP3 603293 +HGNC:1085 BNIP3L BCL2 interacting protein 3 like protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "Nix|BNIP3a" BCL2/adenovirus E1B 19kDa interacting protein 3 like 1997-07-01 2016-06-21 2016-10-05 665 ENSG00000104765 OTTHUMG00000099433 uc003xex.2 AB004788 NM_004331 "CCDS6050|CCDS83267" O60238 "9523198|9973195" MGI:1332659 RGD:621354 BNIP3L 605368 +HGNC:19922 BNIP3P1 BCL2 interacting protein 3 pseudogene 1 pseudogene pseudogene Approved 14q12 14q12 BNIP3P "BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene|BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 1" 2003-01-13 2011-03-18 2016-06-21 2016-06-21 319138 ENSG00000197358 OTTHUMG00000170378 NG_002516 PGOHUM00000258788 +HGNC:39655 BNIP3P2 BCL2 interacting protein 3 pseudogene 2 pseudogene pseudogene Approved 22q11.1 22q11.1 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 2 2011-03-18 2016-06-21 2016-06-21 100421754 ENSG00000236097 OTTHUMG00000155642 NG_027406 PGOHUM00000259679 +HGNC:39656 BNIP3P3 BCL2 interacting protein 3 pseudogene 3 pseudogene pseudogene Approved 18p11.21 18p11.21 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 3 2011-03-18 2016-06-21 2016-06-21 100421736 ENSG00000265631 OTTHUMG00000178819 NG_026278 PGOHUM00000234888 +HGNC:39657 BNIP3P4 BCL2 interacting protein 3 pseudogene 4 pseudogene pseudogene Approved 9q13 09q13 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 4 2011-03-18 2016-06-21 2016-10-05 100289028 ENSG00000271225 OTTHUMG00000184631 NG_021623 PGOHUM00000307618 +HGNC:39658 BNIP3P5 BCL2 interacting protein 3 pseudogene 5 pseudogene pseudogene Approved 15q15.1 15q15.1 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 5 2011-03-18 2016-06-21 2016-06-21 100421724 ENSG00000260571 OTTHUMG00000172874 NG_025378 PGOHUM00000262250 +HGNC:39659 BNIP3P6 BCL2 interacting protein 3 pseudogene 6 pseudogene pseudogene Approved 14q11.2 14q11.2 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 6 2011-03-18 2016-06-21 2016-06-21 100129777 ENSG00000257356 OTTHUMG00000170293 NG_022850 PGOHUM00000258758 +HGNC:49101 BNIP3P7 BCL2 interacting protein 3 pseudogene 7 pseudogene pseudogene Approved 13q11 13q11 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 7 2013-09-02 2016-06-21 2016-06-21 101927265 ENSG00000270496 OTTHUMG00000184738 PGOHUM00000258718 +HGNC:49675 BNIP3P8 BCL2 interacting protein 3 pseudogene 8 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 8 2014-02-04 2016-06-21 2016-06-21 100421710 ENSG00000269431 OTTHUMG00000183270 NG_024253 PGOHUM00000234637 +HGNC:49689 BNIP3P9 BCL2 interacting protein 3 pseudogene 9 pseudogene pseudogene Approved 19p13.11 19p13.11 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 9 2014-02-12 2016-06-21 2016-06-21 106480280 ENSG00000270325 OTTHUMG00000184913 NG_044109 PGOHUM00000259382 +HGNC:49690 BNIP3P10 BCL2 interacting protein 3 pseudogene 10 pseudogene pseudogene Approved 19p13.11 19p13.11 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 10 2014-02-12 2016-06-21 2016-06-21 100421695 ENSG00000270270 OTTHUMG00000184904 NG_024159 PGOHUM00000234203 +HGNC:49724 BNIP3P11 BCL2 interacting protein 3 pseudogene 11 pseudogene pseudogene Approved 7q11.21 07q11.21 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 11 2014-02-14 2014-02-14 2016-06-21 2016-06-21 106480286 ENSG00000271550 OTTHUMG00000184529 NG_045138 PGOHUM00000232827 +HGNC:49692 BNIP3P12 BCL2 interacting protein 3 pseudogene 12 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 12 2014-02-13 2016-06-21 2016-06-21 100421703 NG_024228 PGOHUM00000234552 +HGNC:49693 BNIP3P13 BCL2 interacting protein 3 pseudogene 13 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 13 2014-02-13 2016-06-21 2016-06-21 101060192 ENSG00000269154 OTTHUMG00000182652 PGOHUM00000259383 +HGNC:49694 BNIP3P14 BCL2 interacting protein 3 pseudogene 14 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 14 2014-02-13 2016-06-21 2016-06-21 100421696 NG_024162 PGOHUM00000234209 +HGNC:49695 BNIP3P15 BCL2 interacting protein 3 pseudogene 15 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 15 2014-02-13 2016-06-21 2016-06-21 106481692 ENSG00000270716 OTTHUMG00000184918 NG_045332 PGOHUM00000234556 +HGNC:49696 BNIP3P16 BCL2 interacting protein 3 pseudogene 16 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 16 2014-02-13 2016-06-21 2016-06-21 106480418 ENSG00000267641 OTTHUMG00000180744 NG_043184 PGOHUM00000264265 +HGNC:49697 BNIP3P17 BCL2 interacting protein 3 pseudogene 17 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 17 2014-02-13 2016-06-21 2016-06-21 100421704 ENSG00000271524 OTTHUMG00000184916 NG_024230 PGOHUM00000259385 +HGNC:49698 BNIP3P18 BCL2 interacting protein 3 pseudogene 18 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 18 2014-02-13 2016-06-21 2016-06-21 106481693 ENSG00000269055 OTTHUMG00000182654 NG_043149 PGOHUM00000234561 +HGNC:49699 BNIP3P19 BCL2 interacting protein 3 pseudogene 19 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 19 2014-02-13 2016-06-21 2016-06-21 106480281 ENSG00000271638 OTTHUMG00000184921 NG_044116 PGOHUM00000259312 +HGNC:49700 BNIP3P20 BCL2 interacting protein 3 pseudogene 20 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 20 2014-02-13 2016-06-21 2016-06-21 100421705 ENSG00000271704 OTTHUMG00000184908 NG_024231 PGOHUM00000234563 +HGNC:49701 BNIP3P21 BCL2 interacting protein 3 pseudogene 21 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 21 2014-02-14 2016-06-21 2016-06-21 100131306 NG_021744 PGOHUM00000234215 +HGNC:49702 BNIP3P22 BCL2 interacting protein 3 pseudogene 22 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 22 2014-02-14 2016-06-21 2016-06-21 100421706 ENSG00000268174 OTTHUMG00000182681 NG_024232 PGOHUM00000259388 +HGNC:49703 BNIP3P23 BCL2 interacting protein 3 pseudogene 23 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 23 2014-02-14 2016-06-21 2016-06-21 100421697 ENSG00000268335 OTTHUMG00000182683 NG_024163 PGOHUM00000259313 +HGNC:49704 BNIP3P24 BCL2 interacting protein 3 pseudogene 24 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 24 2014-02-14 2016-06-21 2016-06-21 100421698 ENSG00000269040 OTTHUMG00000182745 NG_024164 PGOHUM00000259315 +HGNC:49705 BNIP3P25 BCL2 interacting protein 3 pseudogene 25 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 25 2014-02-14 2016-06-21 2016-06-21 100421707 ENSG00000268322 OTTHUMG00000182842 NG_024243 PGOHUM00000259392 +HGNC:49706 BNIP3P26 BCL2 interacting protein 3 pseudogene 26 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 26 2014-02-14 2016-06-21 2016-06-21 100421699 ENSG00000268705 OTTHUMG00000182849 NG_024167 PGOHUM00000234235 +HGNC:49707 BNIP3P27 BCL2 interacting protein 3 pseudogene 27 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 27 2014-02-14 2016-06-21 2016-06-21 100421708 ENSG00000268438 OTTHUMG00000182899 NG_024245 PGOHUM00000234610 +HGNC:49708 BNIP3P28 BCL2 interacting protein 3 pseudogene 28 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 28 2014-02-14 2016-06-21 2016-06-21 106481966 ENSG00000271095 OTTHUMG00000184935 NG_045037 PGOHUM00000234612 +HGNC:49709 BNIP3P29 BCL2 interacting protein 3 pseudogene 29 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 29 2014-02-14 2016-06-21 2016-06-21 100421700 ENSG00000269742 OTTHUMG00000182928 NG_024169 PGOHUM00000234245 +HGNC:49710 BNIP3P30 BCL2 interacting protein 3 pseudogene 30 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 30 2014-02-14 2016-06-21 2016-06-21 106481694 ENSG00000268079 OTTHUMG00000182935 NG_043156 PGOHUM00000234618 +HGNC:49711 BNIP3P31 BCL2 interacting protein 3 pseudogene 31 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 31 2014-02-14 2016-06-21 2016-06-21 106480282 ENSG00000270191 OTTHUMG00000184950 NG_044123 PGOHUM00000259316 +HGNC:49712 BNIP3P32 BCL2 interacting protein 3 pseudogene 32 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 32 2014-02-14 2016-06-21 2016-06-21 106480283 ENSG00000268830 OTTHUMG00000182977 NG_044130 PGOHUM00000234252 +HGNC:49713 BNIP3P33 BCL2 interacting protein 3 pseudogene 33 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 33 2014-02-14 2016-06-21 2016-06-21 106481695 ENSG00000268717 OTTHUMG00000182978 NG_043163 PGOHUM00000234253 +HGNC:49714 BNIP3P34 BCL2 interacting protein 3 pseudogene 34 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 34 2014-02-14 2016-06-21 2016-06-21 100128849 ENSG00000269509 OTTHUMG00000183119 NG_021761 PGOHUM00000234628 +HGNC:49715 BNIP3P35 BCL2 interacting protein 3 pseudogene 35 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 35 2014-02-14 2016-06-21 2016-06-21 106480284 ENSG00000271655 OTTHUMG00000184955 NG_044138 PGOHUM00000259317 +HGNC:49716 BNIP3P36 BCL2 interacting protein 3 pseudogene 36 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 36 2014-02-14 2016-06-21 2016-06-21 106481696 ENSG00000271661 OTTHUMG00000184956 NG_043171 PGOHUM00000234632 +HGNC:49717 BNIP3P37 BCL2 interacting protein 3 pseudogene 37 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 37 2014-02-14 2016-06-21 2016-07-25 106480285 ENSG00000270479 OTTHUMG00000184957 NG_044145 PGOHUM00000294957 +HGNC:49718 BNIP3P38 BCL2 interacting protein 3 pseudogene 38 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 38 2014-02-14 2016-06-21 2016-06-21 100421709 ENSG00000268469 OTTHUMG00000183232 NG_024252 PGOHUM00000234635 +HGNC:49719 BNIP3P39 BCL2 interacting protein 3 pseudogene 39 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 39 2014-02-14 2016-06-21 2016-06-21 100421701 ENSG00000269662 OTTHUMG00000183387 NG_024172 PGOHUM00000259321 +HGNC:49720 BNIP3P40 BCL2 interacting protein 3 pseudogene 40 pseudogene pseudogene Approved 19p12 19p12 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 40 2014-02-14 2016-06-21 2016-06-21 100421702 ENSG00000268058 OTTHUMG00000183395 NG_024173 PGOHUM00000234271 +HGNC:49721 BNIP3P41 BCL2 interacting protein 3 pseudogene 41 pseudogene pseudogene Approved 4p16.3 04p16.3 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 41 2014-02-14 2016-06-21 2016-06-21 101059988 ENSG00000248302 OTTHUMG00000159940 PGOHUM00000259887 +HGNC:49722 BNIP3P42 BCL2 interacting protein 3 pseudogene 42 pseudogene pseudogene Approved 7q11.21 07q11.21 BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 42 2014-02-14 2016-06-21 2016-06-21 106481697 ENSG00000223974 OTTHUMG00000156543 NG_045027 PGOHUM00000260350 +HGNC:16976 BNIPL BCL2 interacting protein like protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "BNIPl-1|BNIPL-2|PP753|BNIP-S|BNIP-Salpha|BNIP-Sbeta" BCL2/adenovirus E1B 19kD interacting protein like BCH domain containing 1299 2002-04-26 2016-06-21 2016-10-05 149428 ENSG00000163141 OTTHUMG00000035157 uc001ewl.3 AF193056 NM_138279 "CCDS978|CCDS53362" Q7Z465 "12681488|11741952" MGI:2384749 RGD:1309478 BNIPL 611275 +HGNC:17173 BOC BOC cell adhesion associated, oncogene regulated protein-coding gene gene with protein product Approved 3q13.2 03q13.2 CDON2 "brother of CDO|brother of CDON|cell adhesion associated, oncogene regulated 2" Boc homolog (mouse) "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2006-02-02 2012-12-07 2014-11-19 91653 ENSG00000144857 OTTHUMG00000159305 uc003dzx.4 AY027658 NM_033254 "CCDS2971|CCDS77788|CCDS77789" Q9BWV1 11782431 MGI:2151153 RGD:1304550 BOC 608708 +HGNC:25114 BOD1 biorientation of chromosomes in cell division 1 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 biorientation defective 1 FAM44B family with sequence similarity 44, member B 2004-07-29 2009-03-04 2009-03-04 2015-08-27 91272 ENSG00000145919 OTTHUMG00000130540 uc003mcq.3 AY303777 NM_138369 "CCDS4389|CCDS54951" Q96IK1 17938248 MGI:1916806 RGD:1305622 BOD1 616745 +HGNC:31792 BOD1L1 biorientation of chromosomes in cell division 1 like 1 protein-coding gene gene with protein product Approved 4p15.33 04p15.33 "FLJ33215|KIAA1327" "FAM44A|BOD1L" "family with sequence similarity 44, member A|biorientation of chromosomes in cell division 1-like" 2004-07-29 2012-04-10 2016-01-13 2016-10-05 259282 ENSG00000038219 OTTHUMG00000090659 uc003gmz.2 AF528529 NM_148894 CCDS3411 Q8NFC6 MGI:2444804 RGD:621413 616746 +HGNC:28505 BOD1L2 biorientation of chromosomes in cell division 1 like 2 protein-coding gene gene with protein product Approved 18q21.31 18q21.31 MGC33608 "FAM44C|BOD1P" "family with sequence similarity 44, member C|biorientation of chromosomes in cell division 1 pseudogene" 2005-01-05 2012-04-10 2016-01-13 2016-01-13 284257 ENSG00000228075 OTTHUMG00000180124 uc002lgm.4 AK127964 NM_001257964 CCDS59322 Q8IYS8 17938248 BOD1L2 +HGNC:51435 BOD1P1 biorientation of chromosomes in cell division 1 pseudogene 1 pseudogene pseudogene Approved 18p11.31 18p11.31 2014-11-26 2014-11-26 100129468 ENSG00000263460 OTTHUMG00000178413 NG_011933 PGOHUM00000294706 +HGNC:51436 BOD1P2 biorientation of chromosomes in cell division 1 pseudogene 2 pseudogene pseudogene Approved 18p11.31 18p11.31 2014-11-26 2014-11-26 100129355 ENSG00000215368 OTTHUMG00000178685 NG_011935 PGOHUM00000294574 +HGNC:1087 BOK BOK, BCL2 family apoptosis regulator protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "BCL2L9|BOKL|MGC4631" BCL2 related ovarian killer BCL2 family 1057 1998-01-20 2016-06-17 2016-06-17 666 ENSG00000176720 OTTHUMG00000133411 uc002wbq.4 AF174487 NM_032515 CCDS2550 Q9UMX3 "9356461|11034351|15102863" MGI:1858494 RGD:70984 BOK 605404 +HGNC:35125 BOK-AS1 BOK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q37.3 02q37.3 "NCRNA00151|NAToB" non-protein coding RNA 151 BOKAS "BOK antisense RNA (non-protein coding)|BOK antisense RNA 1 (non-protein coding)" 2009-07-29 2011-09-16 2012-08-15 2014-01-23 100379249 ENSG00000234235 OTTHUMG00000151556 uc021vzh.4 NR_033346 19287972 +HGNC:24263 BOLA1 bolA family member 1 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 CGI-143 "bolA-like 1 (E. coli)|bolA homolog 1 (E. coli)" 2005-05-09 2013-09-02 2016-10-05 51027 ENSG00000178096 OTTHUMG00000012087 uc057klx.1 AF151901 NM_016074 CCDS939 Q9Y3E2 14718656 MGI:1916418 RGD:1310586 BOLA1 613181 +HGNC:29488 BOLA2 bolA family member 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "My016|BOLA2A" "bolA-like 2 (E. coli)|bolA homolog 2 (E. coli)" 2005-05-09 2013-09-02 2014-11-18 552900 ENSG00000183336 OTTHUMG00000176757 uc002dss.3 AF060511 NM_001031827 CCDS32426 Q9H3K6 14718656 MGI:1913412 RGD:1565363 613182 +HGNC:32479 BOLA2B bolA family member 2B protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "bolA-like 2B (E. coli)|bolA homolog 2B (E. coli)" 2006-01-30 2013-09-02 2015-08-27 654483 ENSG00000169627 OTTHUMG00000176858 uc002dxb.3 NM_001039182 CCDS32430 Q9H3K6 14718656 BOLA2B +HGNC:51437 BOLA2P1 bolA family member 2 pseudogene 1 pseudogene pseudogene Approved 18p11.32 18p11.32 2014-11-26 2015-03-04 100652796 ENSG00000266575 OTTHUMG00000178360 NG_032707 PGOHUM00000294700 +HGNC:51438 BOLA2P2 bolA family member 2 pseudogene 2 pseudogene pseudogene Approved 3p21.31 03p21.31 2014-11-26 2014-11-26 106480322 ENSG00000271161 OTTHUMG00000184335 NG_044442 PGOHUM00000299428 +HGNC:51439 BOLA2P3 bolA family member 2 pseudogene 3 pseudogene pseudogene Approved 6p22.3 06p22.3 2014-11-26 2014-11-26 106480323 ENSG00000220771 OTTHUMG00000014343 NG_044450 PGOHUM00000301673 +HGNC:24415 BOLA3 bolA family member 3 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "bolA-like 3 (E. coli)|bolA homolog 3 (E. coli)" 2005-05-09 2013-09-02 2015-09-11 388962 ENSG00000163170 OTTHUMG00000152834 uc002skc.2 BC017744 NM_212552 "CCDS33224|CCDS33225" Q53S33 14718656 MGI:1925903 RGD:1305975 BOLA3 613183 289583 +HGNC:42922 BOLA3-AS1 BOLA3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 2p13.1 02p13.1 "BOLA3 antisense RNA 1 (non-protein coding)|BOLA3 antisense RNA 1" 2011-09-05 2012-10-15 2014-11-18 100507171 ENSG00000225439 OTTHUMG00000152835 uc002ske.4 "BC030102|AK123453" NR_045634 +HGNC:51440 BOLA3P1 bolA family member 3 pseudogene 1 pseudogene pseudogene Approved 11q22.2 11q22.2 2014-11-26 2014-11-26 100288111 ENSG00000255469 OTTHUMG00000165849 NG_030177 PGOHUM00000291121 +HGNC:51441 BOLA3P2 bolA family member 3 pseudogene 2 pseudogene pseudogene Approved 19p13.2 19p13.2 2014-11-26 2014-11-26 100287463 ENSG00000267332 OTTHUMG00000179928 NG_046608 PGOHUM00000295183 +HGNC:51442 BOLA3P3 bolA family member 3 pseudogene 3 pseudogene pseudogene Approved 5q23.2 05q23.2 2014-11-26 2014-11-26 644754 ENSG00000213630 OTTHUMG00000163033 NG_030074 PGOHUM00000300744 +HGNC:51443 BOLA3P4 bolA family member 3 pseudogene 4 pseudogene pseudogene Approved 9p21.1 09p21.1 2014-11-26 2014-11-26 106480324 ENSG00000223807 OTTHUMG00000019755 NG_045852 PGOHUM00000304149 +HGNC:14273 BOLL boule homolog, RNA binding protein protein-coding gene gene with protein product Approved 2q33.1 02q33.1 BOULE "bol (Drosophila boule homolog)-like|bol, boule-like (Drosophila)|boule-like RNA binding protein" RNA binding motif containing 725 2001-02-14 2015-11-12 2016-10-05 66037 ENSG00000152430 OTTHUMG00000132747 uc002uut.4 NM_033030 "CCDS2324|CCDS2325|CCDS63081" Q8N9W6 "11390979|16001084" MGI:1922638 RGD:1559527 BOLL 606165 +HGNC:15519 BOP1 block of proliferation 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 KIAA0124 WD repeat domain containing 362 2001-08-28 2016-04-25 23246 ENSG00000261236 OTTHUMG00000174603 uc033ccj.2 AK024840 NM_015201 CCDS6418 Q14137 8590280 MGI:1334460 RGD:1310589 BOP1 610596 +HGNC:24724 BORA bora, aurora kinase A activator protein-coding gene gene with protein product Approved 13q21.33 13q21.33 FLJ22624 C13orf34 chromosome 13 open reading frame 34 2006-08-15 2011-08-09 2011-08-09 2016-10-05 79866 ENSG00000136122 OTTHUMG00000017068 uc001viv.2 BC025367 NM_024808 "CCDS66560|CCDS73583|CCDS9446" Q6PGQ7 "16890155|18378770|18566290|19487276" MGI:1924994 RGD:1309522 610510 +HGNC:17950 BORCS5 BLOC-1 related complex subunit 5 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 LOH1CR12 myrlysin LOH12CR1 loss of heterozygosity, 12, chromosomal region 1 BLOC-1 related complex 1048 2002-01-08 2015-08-07 2015-08-07 2016-10-05 118426 ENSG00000165714 OTTHUMG00000168542 AY037865 XM_011520551 "CCDS8649|CCDS73448|CCDS81669" Q969J3 "11896457|15284860|25898167" MGI:1915024 RGD:1307624 616598 +HGNC:25939 BORCS6 BLOC-1 related complex subunit 6 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 FLJ20014 lyspersin C17orf59 chromosome 17 open reading frame 59 BLOC-1 related complex 1048 2005-12-16 2015-08-07 2015-08-07 2015-08-07 54785 ENSG00000196544 OTTHUMG00000153930 BC018880 NM_017622 CCDS11133 Q96GS4 25898167 MGI:1919173 RGD:1563885 616599 +HGNC:23516 BORCS7 BLOC-1 related complex subunit 7 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 FLJ40752 diaskedin C10orf32 chromosome 10 open reading frame 32 BLOC-1 related complex 1048 2003-11-21 2015-08-07 2015-08-07 2016-10-05 119032 ENSG00000166275 OTTHUMG00000018975 AK098071 NM_144591 CCDS7542 Q96B45 25898167 MGI:1913689 RGD:1311783 616600 +HGNC:49183 BORCS7-ASMT BORCS7-ASMT readthrough (NMD candidate) other readthrough Approved 10q24.32 10q24.32 C10orf32-ASMT C10orf32-ASMT readthrough (NMD candidate) 2013-09-25 2015-08-07 2015-08-07 2015-08-07 100528007 ENSG00000270316 OTTHUMG00000184175 NR_037644 +HGNC:37247 BORCS8 BLOC-1 related complex subunit 8 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 MEF2BNB MEF2B neighbor BLOC-1 related complex 1048 2011-04-19 2015-08-07 2015-08-07 2015-08-27 729991 ENSG00000254901 OTTHUMG00000166546 NM_001145783 "CCDS46025|CCDS54235" Q96FH0 25898167 MGI:1919618 RGD:1582941 616601 +HGNC:39979 BORCS8-MEF2B BORCS8-MEF2B readthrough other readthrough Approved 19p13.11 19p13.11 MEF2BNB-MEF2B MEF2BNB-MEF2B readthrough 2011-04-19 2015-08-07 2015-08-07 2015-08-07 4207 ENSG00000064489 OTTHUMG00000154572 NM_005919.3 +HGNC:13228 BPESC1 blepharophimosis, epicanthus inversus and ptosis, candidate 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 3q23 03q23 NCRNA00187 non-protein coding RNA 187 blepharophimosis, epicanthus inversus and ptosis, candidate 1 Long non-coding RNAs 788 2000-11-28 2009-08-21 2014-07-18 60467 ENSG00000232416 OTTHUMG00000141266 uc003eta.4 AF196865 NR_026783 Q9GZL8 10995571 +HGNC:1093 BPGM bisphosphoglycerate mutase protein-coding gene gene with protein product Approved 7q33 07q33 2,3-bisphosphoglycerate mutase Bisphosphoglycerate phosphatases 1082 2001-06-22 2015-11-27 2015-11-27 669 ENSG00000172331 OTTHUMG00000155380 uc003vrw.4 BC017050 NM_001724 CCDS5833 P07738 MGI:1098242 RGD:735018 BPGM 613896 119064 "5.4.2.4|3.1.3.13" +HGNC:1094 BPHL biphenyl hydrolase like protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "Bph-rp|VACVase" "breast epithelial mucin-associated antigen|valacyclovir hydrolase" MCNAA biphenyl hydrolase-like (serine hydrolase) 1997-10-17 2016-07-19 2016-10-05 670 ENSG00000137274 OTTHUMG00000014140 uc003mva.4 X81372 NM_001302777 "CCDS4483|CCDS78105" Q86WA6 "7759552|9721218|15832508" MGI:1915271 RGD:1307572 BPHL 603156 S33.982 +HGNC:1095 BPI bactericidal/permeability-increasing protein protein-coding gene gene with protein product Approved 20q11.23 20q11.23 BPIFD1 BPI fold containing family D, member 1 BPI fold containing 456 1992-03-13 2014-11-19 671 ENSG00000101425 OTTHUMG00000032441 uc002xib.3 J04739 NM_001725 CCDS13303 P17213 8432532 MGI:3045315 RGD:1303179 BPI 109195 +HGNC:15749 BPIFA1 BPI fold containing family A member 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "LUNX|bA49G10.5|SPLUNC1" PLUNC "palate, lung and nasal epithelium carcinoma associated|palate, lung and nasal epithelium associated" BPI fold containing 456 2001-09-17 2011-07-29 2015-12-07 2015-12-07 51297 ENSG00000198183 OTTHUMG00000032243 uc002wyu.5 AB024937 NM_130852 CCDS13217 Q9NP55 "11018263|11251963|21787333" MGI:1338036 RGD:619818 607412 +HGNC:16203 BPIFA2 BPI fold containing family A member 2 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "bA49G10.1|SPLUNC2|PSP" C20orf70 chromosome 20 open reading frame 70 BPI fold containing 456 2001-07-17 2011-07-29 2015-12-07 2015-12-07 140683 ENSG00000131050 OTTHUMG00000032244 uc061wfu.1 AF432917 NM_080574 CCDS13214 Q96DR5 11971875 MGI:97787 RGD:3431 +HGNC:16204 BPIFA3 BPI fold containing family A member 3 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "bA49G10.4|SPLUNC3" C20orf71 chromosome 20 open reading frame 71 BPI fold containing 456 2001-07-17 2011-07-29 2015-12-07 2015-12-07 128861 ENSG00000131059 OTTHUMG00000032245 uc002wyr.5 NM_178466 "CCDS13216|CCDS42865" Q9BQP9 "11971875|21787333" MGI:1920638 RGD:1596102 +HGNC:20469 BPIFA4P BPI fold containing family A member 4, pseudogene pseudogene pseudogene Approved 20q11.21 20q11.21 BASE "breast cancer and salivary gland expression gene|PLUNC family pseudogene" BPI fold containing 456 2011-07-29 2015-12-07 2015-12-07 317716 ENSG00000183566 OTTHUMG00000032251 AY180924 NR_026760 Q86YQ2 "12538848|21787333" RGD:1559748 607627 +HGNC:16108 BPIFB1 BPI fold containing family B member 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "dJ1187J4.1|MGC14597|bA49G10.6|LPLUNC1|VEMSGP" von Ebner minor salivary gland protein C20orf114 chromosome 20 open reading frame 114 BPI fold containing 456 2001-07-17 2011-07-29 2015-12-07 2015-12-07 92747 ENSG00000125999 OTTHUMG00000032252 uc002wyw.1 BC008429 NM_033197 CCDS13218 Q8TDL5 "11971875|21787333" MGI:2137431 RGD:1563047 +HGNC:16177 BPIFB2 BPI fold containing family B member 2 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "dJ726C3.2|LPLUNC2" "C20orf184|BPIL1" bactericidal/permeability-increasing protein-like 1 BPI fold containing 456 2001-11-14 2011-07-29 2015-12-07 2015-12-07 80341 ENSG00000078898 OTTHUMG00000032232 uc002wyj.5 AF465765 NM_025227 CCDS13210 Q8N4F0 "12185532|21787333" MGI:1913807 RGD:1310866 614108 +HGNC:16178 BPIFB3 BPI fold containing family B member 3 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "dJ726C3.4|LPLUNC3|RYA3" C20orf185 chromosome 20 open reading frame 185 BPI fold containing 456 2001-07-17 2011-07-29 2015-12-07 2015-12-07 359710 ENSG00000186190 OTTHUMG00000032234 uc002wym.1 AF549189 NM_182658 CCDS13212 P59826 "11971875|21787333" MGI:2675077 RGD:1565613 615717 +HGNC:16179 BPIFB4 BPI fold containing family B member 4 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "dJ726C3.5|LPLUNC4" C20orf186 chromosome 20 open reading frame 186 BPI fold containing 456 2001-07-17 2011-07-29 2015-12-07 2015-12-07 149954 ENSG00000186191 OTTHUMG00000032235 uc010zue.3 AF549190 NM_182519 CCDS13213 P59827 "11971875|21787333" MGI:2685852 RGD:1561174 615718 +HGNC:42177 BPIFB5P BPI fold containing family B member 5, pseudogene pseudogene pseudogene Approved 20q11.21 20q11.21 BPI fold containing 456 2011-08-01 2015-12-07 2015-12-07 100505383 ENSG00000233146 OTTHUMG00000032258 NG_027787 21787333 MGI:2385160 +HGNC:16504 BPIFB6 BPI fold containing family B member 6 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 LPLUNC6 BPIL3 bactericidal/permeability-increasing protein-like 3 BPI fold containing 456 2001-11-14 2011-07-29 2015-12-07 2015-12-07 128859 ENSG00000167104 OTTHUMG00000032238 uc010zuc.2 AF465767 NM_174897 CCDS13211 Q8NFQ5 "12185532|21787333" MGI:2684965 RGD:1311602 614110 +HGNC:16109 BPIFB9P BPI fold containing family B member 9, pseudogene pseudogene pseudogene Approved 20q11.21 20q11.21 dJ1187J4.2 C20orf115 chromosome 20 open reading frame 115 BPI fold containing 456 2001-07-17 2011-08-01 2015-12-07 2015-12-07 402016 ENSG00000125997 OTTHUMG00000032253 NG_029803 MGI:3767993 +HGNC:16503 BPIFC BPI fold containing family C protein-coding gene gene with protein product Approved 22q12.3 22q12.3 dJ149A16.7 BPIL2 bactericidal/permeability-increasing protein-like 2 BPI fold containing 456 2001-11-14 2011-08-01 2011-08-01 2014-11-19 254240 ENSG00000184459 OTTHUMG00000058273 uc062dnp.1 AF465766 NM_174932 CCDS13906 Q8NFQ6 MGI:3026884 RGD:1311686 614109 +HGNC:1096 BPNT1 3'(2'), 5'-bisphosphate nucleotidase 1 protein-coding gene gene with protein product Approved 1q41 01q41 Phosphoinositide phosphatases 1079 1999-07-07 2016-10-05 10380 ENSG00000162813 OTTHUMG00000037435 uc057png.1 AF125042 NM_006085 "CCDS41469|CCDS65787|CCDS65788" O95861 10224133 MGI:1338800 RGD:621833 BPNT1 604053 3.1.3.7 +HGNC:3581 BPTF bromodomain PHD finger transcription factor protein-coding gene gene with protein product Approved 17q24.2 17q24.2 "FAC1|NURF301" FALZ fetal Alzheimer antigen PHD finger proteins 88 1996-10-30 2006-12-01 2006-12-01 2016-10-05 2186 ENSG00000171634 OTTHUMG00000132254 uc002jgf.4 AY282495 "NM_182641|NM_004459" CCDS11673 Q12830 "8975731|10662542|16728976" MGI:2444008 RGD:1307039 BPTF 601819 objectId:2723 +HGNC:13508 BPY2 basic charge, Y-linked, 2 protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 "BPY2A|VCY2A" VCY2 variable charge, Y-linked, 2 2000-09-25 2004-05-28 2004-05-27 2014-11-18 9083 ENSG00000183753 OTTHUMG00000058899 uc284rci.1 AF000980 NM_004678 CCDS14800 O14599 400013 +HGNC:25449 BPY2B basic charge, Y-linked, 2B protein-coding gene gene with protein product Approved Yq11.23 Yq11.23 VCY2B 2004-08-25 2016-10-05 442867 ENSG00000183795 OTTHUMG00000045101 uc004fwi.4 NM_001002760 CCDS44029 O14599 +HGNC:18225 BPY2C basic charge, Y-linked, 2C protein-coding gene gene with protein product Approved Yq11.23 Yq11.23 VCY2C 2004-08-25 2016-10-05 442868 ENSG00000185894 OTTHUMG00000045199 uc004fws.4 NM_001002761 CCDS44030 O14599 BPY2C +HGNC:38794 BPY2DP basic charge, Y-linked, 2D, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-08-04 2014-11-19 100885797 ENSG00000229745 OTTHUMG00000041060 NG_032694 +HGNC:1097 BRAF B-Raf proto-oncogene, serine/threonine kinase protein-coding gene gene with protein product Approved 7q34 07q34 BRAF1 v-raf murine sarcoma viral oncogene homolog B "Mitogen-activated protein kinase kinase kinases|RAF family" "654|1157" 1991-07-16 2016-02-15 2014-06-26 2016-10-12 673 ENSG00000157764 OTTHUMG00000157457 uc003vwc.5 M95712 NM_004333 CCDS5863 P15056 "2284096|1565476" MGI:88190 RGD:619908 LRG_299|http://www.lrg-sequence.org/LRG/LRG_299 BRAF 164757 119066 objectId:1943 +HGNC:18615 BRAFP1 BRAF pseudogene 1 pseudogene pseudogene Approved Xq13.3 Xq13.3 BRAF2 BRAFPS2 "v-raf murine sarcoma viral oncogene homolog B pseudogene 2|v-raf murine sarcoma viral oncogene homolog B pseudogene 1" 2003-07-21 2011-04-28 2014-06-26 2014-11-26 286494 ENSG00000224775 OTTHUMG00000021868 NG_003108 1630826 300956 PGOHUM00000305160 +HGNC:1098 BRAFPS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:1099 BRAP BRCA1 associated protein protein-coding gene gene with protein product Approved 12q24.12 12q24.12 "BRAP2|RNF52|IMP" "impedes mitogenic signal propagation|galectin-2-binding protein" Ring finger proteins 58 1998-09-17 2015-08-24 8315 ENSG00000089234 OTTHUMG00000169600 uc001tsn.4 AF035620 XM_005253944 CCDS9154 Q7Z569 "9497340|19198608" MGI:1919649 RGD:1586551 BRAP 604986 +HGNC:21701 BRAT1 BRCA1 associated ATM activator 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 MGC22916 BRCA1-associated protein required for ATM activation protein 1 "C7orf27|BAAT1" "chromosome 7 open reading frame 27|BRCA1-associated ATM activator 1" 2003-07-14 2011-03-22 2016-02-03 2016-02-03 221927 ENSG00000106009 OTTHUMG00000119091 uc003smi.4 BC015632 NM_152743 CCDS5334 Q6PJG6 16452482 MGI:1891679 RGD:1565146 BRAT1 614506 444663 +HGNC:1100 BRCA1 BRCA1, DNA repair associated protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "RNF53|BRCC1|PPP1R53|FANCS" "BRCA1/BRCA2-containing complex, subunit 1|protein phosphatase 1, regulatory subunit 53|Fanconi anemia, complementation group S" "breast cancer 1, early onset|breast cancer 1" "Ring finger proteins|Fanconi anemia complementation groups|Protein phosphatase 1 regulatory subunits|BRCA1 A complex|BRCA1 B complex|BRCA1 C complex" "58|548|694|1328|1335|1336" 1991-02-20 2016-05-23 2016-10-12 672 ENSG00000012048 OTTHUMG00000157426 uc002ict.4 U14680 NM_007294 "CCDS11453|CCDS11454|CCDS11455|CCDS11456|CCDS11459" P38398 "1676470|25472942" MGI:104537 RGD:2218 "Breast Cancer|http://research.nhgri.nih.gov/bic/|BRCA1 database at LOVD-China|http://genomed.org/LOVD/BC/home.php?select_db=BRCA1|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/cancer/home.php?select_db=BRCA1|LOVD - Leiden Open Variation Database|http://proteomics.bio21.unimelb.edu.au/lovd/genes/BRCA1|LRG_292|http://www.lrg-sequence.org/LRG/LRG_292" BRCA1 113705 119068 +HGNC:28470 BRCA1P1 BRCA1 pseudogene 1 pseudogene pseudogene Approved 17q21 17q21 "LBRCA1|PsiBRCA1|pseudo-BRCA1" like-BRCA1 2005-05-26 2005-08-09 394269 NG_003183 "11880951|8954804|10205276" +HGNC:1101 BRCA2 BRCA2, DNA repair associated protein-coding gene gene with protein product Approved 13q13.1 13q13.1 "FAD|FAD1|BRCC2|XRCC11" BRCA1/BRCA2-containing complex, subunit 2 "FANCD1|FACD|FANCD" "Fanconi anemia, complementation group D1|breast cancer 2, early onset|breast cancer 2" Fanconi anemia complementation groups 548 1994-10-17 2016-05-23 2016-10-12 675 ENSG00000139618 OTTHUMG00000017411 uc001uub.2 U43746 NM_000059 CCDS9344 P51587 "8091231|7581463|15057823" MGI:109337 RGD:2219 "Breast Cancer|http://research.nhgri.nih.gov/bic/|Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|BRCA1 database at LOVD-China|http://genomed.org/LOVD/BC/home.php?select_db=BRCA2|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/cancer/home.php?select_db=BRCA2|LOVD - Leiden Open Variation Database|http://proteomics.bio21.unimelb.edu.au/lovd/genes/BRCA2|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCD1|LRG_293|http://www.lrg-sequence.org/LRG/LRG_293" BRCA2 600185 119072 +HGNC:18617 BRCA3 breast cancer 3 phenotype phenotype only Approved 13q21 13q21 BRCAX 2002-05-07 2011-04-11 60500 "10944226|11792833" 605365 +HGNC:24185 BRCC3 BRCA1/BRCA2-containing complex subunit 3 protein-coding gene gene with protein product Approved Xq28 Xq28 "C6.1A|BRCC36" Lys-63-specific deubiquitinase CXorf53 "chromosome X open reading frame 53|BRCA1/BRCA2-containing complex, subunit 3" BRCA1 A complex 1328 2004-12-03 2005-11-21 2015-11-12 2015-11-12 79184 ENSG00000185515 OTTHUMG00000022658 uc065cjq.1 X64643 NM_024332 "CCDS56610|CCDS56611|CCDS56612" P46736 "1303175|14636569" MGI:2389572 RGD:1588543 BRCC3 300617 268795 M67.004 +HGNC:51444 BRCC3P1 BRCA1/BRCA2-containing complex subunit 3 pseudogene 1 pseudogene pseudogene Approved 5q35.2 05q35.2 BRCA1/BRCA2-containing complex, subunit 3 pseudogene 1 2014-11-26 2015-11-12 2015-11-12 100421311 ENSG00000251667 OTTHUMG00000163184 NG_024746 PGOHUM00000301193 +HGNC:1102 BRD1 bromodomain containing 1 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "BRL|BRPF2" BR140-like bromodomain-containing 1 "PHD finger proteins|PWWP domain containing" "88|1147" 1999-10-29 2002-01-14 2015-08-26 23774 ENSG00000100425 OTTHUMG00000150288 uc032qrr.2 AF005067 NM_014577 "CCDS14080|CCDS77686" O95696 "10591208|10602503" MGI:1924161 RGD:1311855 BRD1 604589 objectId:2724 +HGNC:1103 BRD2 bromodomain containing 2 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "KIAA9001|RING3|D6S113E|NAT|FSRG1" bromodomain-containing 2 2000-07-25 2002-01-14 2016-10-05 6046 ENSG00000204256 OTTHUMG00000031241 uc003ocn.4 X96670 XR_001743557 "CCDS4762|CCDS56420|CCDS56421" P25440 "1352711|8781126" MGI:99495 RGD:6502942 BRD2 601540 objectId:1944 +HGNC:41311 BRD2-IT1 BRD2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6p21.32 06p21.32 BRD2 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2016-01-13 106478972 ENSG00000223837 OTTHUMG00000140321 uc063nsz.1 +HGNC:1104 BRD3 bromodomain containing 3 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "RING3L|ORFX|KIAA0043" RING3-like bromodomain-containing 3 2000-07-25 2002-01-14 2016-10-05 8019 ENSG00000169925 OTTHUMG00000021004 uc004cew.4 NM_007371 CCDS6980 Q15059 "7584044|8781126" MGI:1914632 RGD:1308925 BRD3 601541 objectId:2725 +HGNC:13575 BRD4 bromodomain containing 4 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "HUNKI|MCAP|CAP|HUNK1" chromosome-associated protein bromodomain-containing 4 2000-09-26 2002-01-14 2015-09-11 23476 ENSG00000141867 OTTHUMG00000183252 uc002nar.4 Y12059 NM_058243 "CCDS12328|CCDS46004|CCDS82307" O60885 10938129 MGI:1888520 RGD:1307282 BRD4 608749 449868 objectId:1945 +HGNC:14310 BRD7 bromodomain containing 7 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "CELTIX1|BP75" bromodomain-containing 7 2001-01-02 2002-01-14 2014-11-19 29117 ENSG00000166164 OTTHUMG00000133170 uc021thx.2 AF213969 NM_013263 "CCDS10742|CCDS54007" Q9NPI1 "10526152|18809673" MGI:1349766 RGD:1309891 BRD7 objectId:2726 +HGNC:19923 BRD7P1 bromodomain containing 7 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 BRD7P bromodomain containing 7 pseudogene 2003-01-13 2009-11-25 2009-11-25 2014-11-19 100288948 ENSG00000259043 OTTHUMG00000170674 NG_022855 PGOHUM00000248110 +HGNC:33541 BRD7P2 bromodomain containing 7 pseudogene 2 pseudogene pseudogene Approved 3q25.33 03q25.33 2007-07-25 2014-11-18 647076 ENSG00000184100 OTTHUMG00000158952 NG_009641 PGOHUM00000238245 +HGNC:24171 BRD7P3 bromodomain containing 7 pseudogene 3 pseudogene pseudogene Approved 6q22.31 06q22.31 2007-07-25 2010-09-29 23629 NR_002730 +HGNC:37630 BRD7P4 bromodomain containing 7 pseudogene 4 pseudogene pseudogene Approved 6q21 06q21 2009-11-26 2014-11-19 100287229 ENSG00000218676 OTTHUMG00000015376 NG_016163 PGOHUM00000243742 +HGNC:37631 BRD7P5 bromodomain containing 7 pseudogene 5 pseudogene pseudogene Approved 13q32.1 13q32.1 2009-11-26 2014-11-19 100129259 ENSG00000235768 OTTHUMG00000017211 NG_009642 PGOHUM00000248464 +HGNC:37632 BRD7P6 bromodomain containing 7 pseudogene 6 pseudogene pseudogene Approved 2p13.3 02p13.3 2009-11-26 2014-11-19 100128042 ENSG00000235289 OTTHUMG00000153163 NG_016161 PGOHUM00000240674 +HGNC:19874 BRD8 bromodomain containing 8 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "SMAP|p120" 2003-02-07 2016-10-05 10902 ENSG00000112983 OTTHUMG00000129204 uc003lcf.2 AF016270 NM_006696 "CCDS4198|CCDS34241|CCDS54907" Q9H0E9 "8611617|9368056" MGI:1925906 RGD:1307003 BRD8 602848 objectId:2727 +HGNC:25818 BRD9 bromodomain containing 9 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 FLJ13441 2004-01-08 2016-04-25 65980 ENSG00000028310 OTTHUMG00000159258 uc003jbq.4 AK023503 NM_023924 "CCDS34127|CCDS34128" Q9H8M2 12477932 MGI:2145317 RGD:1307359 BRD9 objectId:2728 +HGNC:51445 BRD9P1 bromodomain containing 9 pseudogene 1 pseudogene pseudogene Approved 11q13.2 11q13.2 2014-11-26 2014-11-26 106481721 ENSG00000254736 OTTHUMG00000166923 NG_043387 PGOHUM00000291008 +HGNC:51446 BRD9P2 bromodomain containing 9 pseudogene 2 pseudogene pseudogene Approved 5p15.33 05p15.33 2014-11-26 2014-11-26 ENSG00000249908 OTTHUMG00000162147 PGOHUM00000300474 +HGNC:1105 BRDT bromodomain testis associated protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "BRD6|CT9" cancer/testis antigen 9 bromodomain, testis-specific 1997-08-15 2016-03-03 2016-03-03 676 ENSG00000137948 OTTHUMG00000010113 uc001dol.5 AF019085 NM_207189 "CCDS735|CCDS55615|CCDS55616|CCDS72820" Q58F21 9367677 MGI:1891374 RGD:1306678 BRDT 602144 objectId:2729 +HGNC:51447 BRDTP1 bromodomain testis associated pseudogene 1 pseudogene pseudogene Approved Xq21.33 Xq21.33 bromodomain, testis-specific pseudogene 1 2014-11-26 2016-03-03 2016-03-03 643486 ENSG00000271209 OTTHUMG00000185081 NR_003539 PGOHUM00000304766 +HGNC:1106 BRE brain and reproductive organ-expressed (TNFRSF1A modulator) protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "BRCC45|BRCC4" BRCA1/BRCA2-containing complex, subunit 4 BRCA1 A complex 1328 1999-04-23 2016-10-05 9577 ENSG00000158019 OTTHUMG00000097831 uc002rlu.4 AF015767 NM_001329115 "CCDS1763|CCDS1764|CCDS1765" Q9NXR7 "9737713|7826398" MGI:1333875 RGD:735111 BRE 610497 +HGNC:44171 BRE-AS1 BRE antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p23.2 02p23.2 BRE antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100302650 BC014088 NR_028308 +HGNC:11551 BRF1 BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "TFIIIB90|BRF|hBRF" "TAF3B2|TAF3C|GTF3B" "TATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 2|BRF1 homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)" General transcription factors 565 1998-08-20 2001-12-07 2013-05-29 2014-11-19 2972 ENSG00000185024 OTTHUMG00000029884 uc010axg.2 U28838 NM_001519 "CCDS10001|CCDS42001|CCDS55949|CCDS55950|CCDS55951|CCDS55952|CCDS55953" Q92994 "7624363|8943358" MGI:1919558 RGD:1311158 BRF1 604902 448647 +HGNC:17298 BRF2 BRF2, RNA polymerase III transcription initiation factor 50 kDa subunit protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "FLJ11052|BRFU|TFIIIB50" BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like 2001-11-30 2013-05-29 2014-11-19 55290 ENSG00000104221 OTTHUMG00000164025 uc003xkk.4 AF298153 NM_018310 CCDS6098 Q9HAW0 "11483580|11564744" MGI:1913903 RGD:1308817 BRF2 607013 +HGNC:1109 BRI3 brain protein I3 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 2000-02-25 2014-11-19 25798 ENSG00000164713 OTTHUMG00000154275 uc003upi.3 AF106966 NM_015379 "CCDS5656|CCDS55133" O95415 14592447 MGI:1933174 RGD:1309187 BRI3 615628 +HGNC:14251 BRI3BP BRI3 binding protein protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "BNAS1|KG19|HCCR-2|HCCRBP-3" 2002-01-03 2016-10-05 140707 ENSG00000184992 OTTHUMG00000168548 uc001uha.2 AF284094 NM_080626 CCDS9262 Q8WY22 "11860200|17765869" MGI:1924059 RGD:1561711 BRI3BP 615627 +HGNC:51482 BRI3BPP1 BRI3 binding protein pseudogene 1 pseudogene pseudogene Approved 19p12 19p12 2014-12-11 2014-12-11 100129976 ENSG00000269136 OTTHUMG00000182874 NG_021759 PGOHUM00000295286 +HGNC:33533 BRI3P1 brain protein I3 pseudogene 1 pseudogene pseudogene Approved 1p21.2 01p21.2 2007-07-19 2014-11-19 730010 ENSG00000225169 OTTHUMG00000010919 NG_009718 PGOHUM00000244816 +HGNC:32543 BRI3P2 brain protein I3 pseudogene 2 pseudogene pseudogene Approved 12p12.1 12p12.1 2007-07-19 2014-11-19 441630 NG_009662 +HGNC:32544 BRI3P3 brain protein I3 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2007-07-19 2014-11-19 100101554 NG_032028 +HGNC:28309 BRICD5 BRICHOS domain containing 5 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC21830 C16orf79 chromosome 16 open reading frame 79 BRICHOS domain containing 457 2006-08-17 2012-10-10 2012-10-10 2014-11-18 283870 ENSG00000182685 OTTHUMG00000128831 uc002cpi.3 BC039154 NM_182563 CCDS10463 Q6PL45 12477932 MGI:2441766 RGD:1596720 BRICD5 +HGNC:2687 BRINP1 BMP/retinoic acid inducible neural specific 1 protein-coding gene gene with protein product Approved 9q33.1 09q33.1 FAM5A "DBCCR1|DBC1" "deleted in bladder cancer chromosome region candidate 1|deleted in bladder cancer 1|bone morphogenetic protein/retinoic acid inducible neural-specific 1" 1996-10-02 2013-07-31 2016-02-23 2016-10-05 1620 ENSG00000078725 OTTHUMG00000021020 AF027734 NM_014618 CCDS6822 O60477 "9175739|10444335|15193422" MGI:1928478 RGD:708519 602865 +HGNC:13746 BRINP2 BMP/retinoic acid inducible neural specific 2 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 DBCCR1L2 FAM5B "family with sequence similarity 5, member B|bone morphogenetic protein/retinoic acid inducible neural-specific 2" 2005-03-18 2013-07-31 2016-02-23 2016-10-05 57795 ENSG00000198797 OTTHUMG00000034953 NM_021165 CCDS1320 Q9C0B6 15193423 MGI:2443333 RGD:708419 +HGNC:22393 BRINP3 BMP/retinoic acid inducible neural specific 3 protein-coding gene gene with protein product Approved 1q31.1 01q31.1 "DBCCR1L|DBCCR1L1" FAM5C "family with sequence similarity 5, member C|bone morphogenetic protein/retinoic acid inducible neural-specific 3" 2005-03-18 2013-09-18 2016-02-23 2016-02-23 339479 ENSG00000162670 OTTHUMG00000035533 AB111893 NM_199051 CCDS1373 Q76B58 "16018821|15193423" MGI:2443035 RGD:708421 +HGNC:20473 BRIP1 BRCA1 interacting protein C-terminal helicase 1 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 "OF|BACH1|FANCJ" BRCA1/BRCA2-associated helicase 1 "Fanconi anemia complementation groups|DNA helicases|BRCA1 B complex" "548|1167|1335" 2003-04-11 2016-10-12 83990 ENSG00000136492 OTTHUMG00000179233 uc002izk.3 AF360549 NM_032043 CCDS11631 Q9BX63 "11595410|11301010" MGI:2442836 RGD:1307659 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCJ|LRG_300|http://www.lrg-sequence.org/LRG/LRG_300" BRIP1 605882 119080 +HGNC:24170 BRIX1 BRX1, biogenesis of ribosomes protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "BRIX|FLJ11100" BXDC2 "brix domain containing 2|BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)" 2005-04-22 2009-09-25 2015-02-13 2015-08-24 55299 ENSG00000113460 OTTHUMG00000162021 uc003jja.4 NM_018321 CCDS34143 Q8TDN6 12477932 MGI:1915082 RGD:1308508 BRIX1 +HGNC:51527 BRIX1P1 BRX1, biogenesis of ribosomes pseudogene 1 pseudogene pseudogene Approved 8q11.22 08q11.22 2015-02-13 2015-02-13 100422268 ENSG00000254025 OTTHUMG00000164863 NG_026100 PGOHUM00000303541 +HGNC:23057 BRK1 BRICK1, SCAR/WAVE actin nucleating complex subunit protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "MDS027|HSPC300" "haematopoietic stem/progenitor cell protein 300|BRICK1, SCAR/WAVE actin-nucleating complex subunit, homolog (Arabidopsis thaliana)" C3orf10 "chromosome 3 open reading frame 10|BRICK1, SCAR/WAVE actin-nucleating complex subunit" 2004-02-26 2011-06-07 2016-04-04 2016-04-04 55845 ENSG00000254999 OTTHUMG00000155400 uc003bvb.4 AF161418 NM_018462 CCDS54553 Q8WUW1 14695531 MGI:1915406 RGD:1598136 BRK1 611183 +HGNC:42021 BRK1P2 BRICK1, SCAR/WAVE actin-nucleating complex subunit pseudogene 2 pseudogene pseudogene Approved 13q31.3 13q31.3 2011-08-15 2014-11-18 100874492 ENSG00000227983 OTTHUMG00000017186 NG_032391 PGOHUM00000257957 +HGNC:17262 BRMS1 breast cancer metastasis suppressor 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 DKFZP564A063 2003-12-02 2015-08-24 25855 ENSG00000174744 OTTHUMG00000167081 uc001ohp.2 AF147350 NM_015399 "CCDS8135|CCDS44654" Q9HCU9 10850410 MGI:2388804 RGD:1311057 BRMS1 606259 +HGNC:20512 BRMS1L breast cancer metastasis-suppressor 1-like protein-coding gene gene with protein product Approved 14q13.2 14q13.2 "MGC11296|FLJ39177" BRMS1 breast cancer metastasis-suppressor 1 2003-03-05 2003-12-03 2003-12-02 2016-10-05 84312 ENSG00000100916 OTTHUMG00000170559 uc001wtl.4 AK096496 NM_032352 CCDS32066 Q5PSV4 MGI:1196337 RGD:6495833 BRMS1L +HGNC:26512 BROX BRO1 domain and CAAX motif containing protein-coding gene gene with protein product Approved 1q41 01q41 FLJ32421 BRO1 domain containing protein C1orf58 chromosome 1 open reading frame 58 2005-05-13 2010-11-30 2010-11-30 2015-08-24 148362 ENSG00000162819 OTTHUMG00000037650 uc001hns.2 NM_144695 "CCDS1534|CCDS73036|CCDS73037" Q5VW32 18190528 MGI:1918928 RGD:1307161 BROX +HGNC:14255 BRPF1 bromodomain and PHD finger containing 1 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 BR140 "peregrin|bromodomain-containing protein, 140kD" bromodomain and PHD finger containing, 1 "PHD finger proteins|PWWP domain containing" "88|1147" 2000-12-14 2015-11-11 2016-10-05 7862 ENSG00000156983 OTTHUMG00000097033 uc062glp.1 M91585 NM_001003694 "CCDS2575|CCDS33692|CCDS82729|CCDS82730" P55201 "8946209|7906940" MGI:1926033 RGD:1584828 BRPF1 602410 objectId:2730 +HGNC:14256 BRPF3 bromodomain and PHD finger containing 3 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 KIAA1286 bromodomain and PHD finger containing, 3 "PHD finger proteins|PWWP domain containing" "88|1147" 2000-12-14 2015-11-11 2015-11-11 27154 ENSG00000096070 OTTHUMG00000014589 uc003olv.5 AB033112 NM_015695 CCDS34437 Q9ULD4 10574462 MGI:2146836 RGD:1306868 BRPF3 616856 objectId:2731 +HGNC:1113 BRS3 bombesin receptor subtype 3 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "BB3|BB3R" bombesin like receptor 3 Bombesin receptors 222 1993-11-08 2016-06-07 2016-06-07 680 ENSG00000102239 OTTHUMG00000022726 uc004ezv.2 NM_001727 CCDS14656 P32247 8383682 MGI:1100501 RGD:628645 BRS3 300107 objectId:40 +HGNC:18994 BRSK1 BR serine/threonine kinase 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 KIAA1811 2005-01-12 2016-10-05 84446 ENSG00000160469 OTTHUMG00000180735 uc002qkg.4 AB058714 NM_032430 CCDS12921 Q8TDC3 14976552 MGI:2685946 RGD:1563268 BRSK1 609235 objectId:1946 +HGNC:11405 BRSK2 BR serine/threonine kinase 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 PEN11B serine/threonine kinase 29 "C11orf7|STK29" chromsosome 11 open reading frame 7 1999-12-17 2005-01-27 2003-09-11 2015-08-26 9024 ENSG00000174672 OTTHUMG00000167089 uc001ltj.5 AF020089 NM_003957 "CCDS41590|CCDS58106|CCDS58107|CCDS58108|CCDS60696" Q8IWQ3 "9852686|9929968" MGI:1923020 RGD:1566256 BRSK2 609236 objectId:1947 +HGNC:12760 BRWD1 bromodomain and WD repeat domain containing 1 protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "FLJ11315|N143|DCAF19" "C21orf107|WDR9" "chromosome 21 open reading frame 107|WD repeat domain 9" "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2000-05-23 2005-05-13 2005-05-13 2015-09-11 54014 ENSG00000185658 OTTHUMG00000066030 uc002yxk.3 AJ002572 NM_033656 "CCDS13662|CCDS13663|CCDS33557" Q9NSI6 MGI:1890651 RGD:1309030 BRWD1 objectId:2732 +HGNC:40614 BRWD1-AS1 BRWD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 BRWD1 antisense RNA 1 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874093 ENSG00000238141 OTTHUMG00000133705 uc031rvp.2 NR_046655 +HGNC:16423 BRWD1-AS2 BRWD1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 "C21orf87|NCRNA00257|BRWD1-IT2" "chromosome 21 open reading frame 87|non-protein coding RNA 257|BRWD1 intronic transcript 2 (non-protein coding)" 2001-08-24 2014-04-08 2014-04-08 2014-11-19 103091865 ENSG00000255568 OTTHUMG00000066154 AF426265 P59051 12036297 +HGNC:41920 BRWD1-IT1 BRWD1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 BRWD1 intronic transcript 1 (non-protein coding) 2011-05-18 2015-02-25 2015-02-25 106480743 ENSG00000237373 OTTHUMG00000133692 uc062adn.1 +HGNC:51528 BRWD1P1 bromodomain and WD repeat domain containing 1 pseudogene 1 pseudogene pseudogene Approved 1p36.21 01p36.21 2015-02-13 2015-02-13 106481724 ENSG00000215909 OTTHUMG00000007922 NG_043410 PGOHUM00000296221 +HGNC:51529 BRWD1P2 bromodomain and WD repeat domain containing 1 pseudogene 2 pseudogene pseudogene Approved 12q21.33 12q21.33 2015-02-26 2015-02-26 100287505 ENSG00000258290 OTTHUMG00000169951 NG_030127 PGOHUM00000291426 +HGNC:51530 BRWD1P3 bromodomain and WD repeat domain containing 1 pseudogene 3 pseudogene pseudogene Approved 7p21.1 07p21.1 2015-02-13 2015-02-13 106480688 ENSG00000232841 OTTHUMG00000152463 NG_043313 PGOHUM00000302058 +HGNC:17342 BRWD3 bromodomain and WD repeat domain containing 3 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "FLJ38568|MRX93" "X-linked mental retardation|WD repeat domain containing" "103|362" 2005-01-07 2015-08-26 254065 ENSG00000165288 OTTHUMG00000021908 uc004edt.4 NM_153252 CCDS14447 Q6RI45 "15543602|16094372" MGI:3029414 RGD:1559445 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BRWD3 BRWD3 300553 159239 objectId:2775 +HGNC:15832 BSCL2 BSCL2, seipin lipid droplet biogenesis associated protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "GNG3LG|SPG17" "spastic paraplegia 17 (Silver syndrome)|Berardinelli-Seip congenital lipodystrophy 2 (seipin)" 2001-07-02 2016-05-24 2016-10-12 26580 ENSG00000168000 OTTHUMG00000150624 uc001nup.4 NM_032667 "CCDS8031|CCDS44627|CCDS55769" Q96G97 "11479539|14981520" MGI:1298392 RGD:1308135 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_235|http://www.lrg-sequence.org/LRG/LRG_235" BSCL2 606158 119085 +HGNC:25501 BSDC1 BSD domain containing 1 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "FLJ10276|RP4-811H24.7" 2005-07-20 2014-11-19 55108 ENSG00000160058 OTTHUMG00000007588 uc001bvh.5 BX641056 NM_018045 "CCDS363|CCDS44101|CCDS44102|CCDS44103|CCDS72752" Q9NW68 12477932 MGI:1913466 RGD:1311622 BSDC1 +HGNC:1116 BSG basigin (Ok blood group) protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "EMMPRIN|CD147" Ok blood group OK basigin "Blood group antigens|CD molecules|I-set domain containing|Immunoglobulin like domain containing" "454|471|593|594" 1993-10-25 2014-01-02 2016-10-12 682 ENSG00000172270 OTTHUMG00000177718 uc002loz.6 L10240 NM_001728 "CCDS12032|CCDS12033|CCDS12034|CCDS58635" P35613 "8404035|7812975" MGI:88208 RGD:2220 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_816|http://www.lrg-sequence.org/LRG/LRG_816" BSG 109480 CD147 +HGNC:1117 BSN bassoon presynaptic cytomatrix protein protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "zinc finger protein 231|neuronal double zinc finger protein" ZNF231 bassoon (presynaptic cytomatrix protein) Zinc fingers 26 1999-01-07 2013-01-07 2016-10-05 8927 ENSG00000164061 OTTHUMG00000133750 uc003cxe.5 AF052224 NM_003458 CCDS2800 Q9UPA5 "9806829|10329005" MGI:1277955 RGD:2223 BSN 604020 +HGNC:40102 BSN-AS1 BSN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 BSN antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 106478963 ENSG00000235120 OTTHUMG00000156880 uc062jvb.1 +HGNC:42445 BSN-AS2 BSN antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 BSN antisense RNA 2 (non-protein coding) 2011-07-28 2012-10-15 2014-11-18 100132677 ENSG00000226913 OTTHUMG00000156881 uc003cxd.1 NR_038866 +HGNC:16512 BSND barttin CLCNK type accessory beta subunit protein-coding gene gene with protein product Approved 1p32.3 01p32.3 BART DFNB73 "deafness, autosomal recessive 73|Bartter syndrome, infantile, with sensorineural deafness (Barttin)" Chloride voltage-gated channels 302 2004-01-28 2016-02-04 2016-02-04 7809 ENSG00000162399 OTTHUMG00000008112 uc001cye.4 AY034632 NM_057176 CCDS602 Q8WZ55 "11687798|11734858|19646679" MGI:2153465 RGD:621139 BSND 606412 119089 +HGNC:51536 BSNDP1 barttin CLCNK type accessory beta subunit pseudogene 1 pseudogene pseudogene Approved 20p11.1 20p11.1 barttin CLCNK-type chloride channel accessory beta subunit pseudogene 1 2015-02-26 2016-02-04 2016-02-04 106480329 ENSG00000275048 OTTHUMG00000187967 NG_045173 PGOHUM00000297077 +HGNC:51537 BSNDP2 barttin CLCNK type accessory beta subunit pseudogene 2 pseudogene pseudogene Approved 20p11.1 20p11.1 barttin CLCNK-type chloride channel accessory beta subunit pseudogene 2 2015-02-26 2016-02-04 2016-02-04 100422517 ENSG00000274973 OTTHUMG00000187970 NG_025001 PGOHUM00000297078 +HGNC:51538 BSNDP3 barttin CLCNK type accessory beta subunit pseudogene 3 pseudogene pseudogene Approved 20p11.1 20p11.1 barttin CLCNK-type chloride channel accessory beta subunit pseudogene 3 2015-02-26 2016-02-04 2016-02-04 106481725 ENSG00000277508 OTTHUMG00000187972 NG_043420 PGOHUM00000296936 +HGNC:51539 BSNDP4 barttin CLCNK type accessory beta subunit pseudogene 4 pseudogene pseudogene Approved 7p11.2 07p11.2 barttin CLCNK-type chloride channel accessory beta subunit pseudogene 4 2015-02-26 2016-02-04 2016-02-04 106481726 ENSG00000229627 OTTHUMG00000156086 NG_043429 PGOHUM00000302685 +HGNC:33906 BSPH1 binder of sperm protein homolog 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "ELSPBP2|BSP1" "epididymal sperm binding protein 2|bovine seminal plasma protein homolog 1" 2008-10-28 2016-10-05 100131137 ENSG00000188334 OTTHUMG00000183137 uc002phs.1 DQ227497 NM_001128326 CCDS46135 Q075Z2 "17085770|18923155" MGI:2685613 RGD:1594649 BSPH1 612213 +HGNC:18232 BSPRY B-box and SPRY domain containing protein-coding gene gene with protein product Approved 9q32 09q32 FLJ20150 2003-05-22 2016-10-05 54836 ENSG00000119411 OTTHUMG00000021006 uc004bhg.5 AJ276691 NM_017688 CCDS43868 Q5W0U4 "10978534|11099500" MGI:2177191 RGD:708400 BSPRY +HGNC:1118 BST1 bone marrow stromal cell antigen 1 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 CD157 "NAD(+) nucleosidase|ADP-ribosyl cyclase 2" CD molecules 471 1994-11-17 2016-10-05 683 ENSG00000109743 OTTHUMG00000097739 uc003goh.4 D21878 NM_004334 CCDS3416 Q10588 8202488 MGI:105370 RGD:620344 BST1 600387 CD157 3.2.2.5 +HGNC:1119 BST2 bone marrow stromal cell antigen 2 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "CD317|tetherin" CD molecules 471 1994-11-17 2016-07-29 684 ENSG00000130303 OTTHUMG00000191770 uc060vid.1 NM_004335 CCDS12358 Q10589 7607676 MGI:1916800 RGD:727849 BST2 600534 CD317 +HGNC:20450 BSX brain specific homeobox protein-coding gene gene with protein product Approved 11q24.1 11q24.1 BSX1 NKL subclass homeoboxes and pseudogenes 519 2007-07-09 2015-11-23 2015-11-23 390259 ENSG00000188909 OTTHUMG00000150247 uc010rzs.3 NM_001098169 CCDS41728 Q3C1V8 MGI:2669849 RGD:1565120 BSX 611074 8533 +HGNC:17307 BTAF1 B-TFIID TATA-box binding protein associated factor 1 protein-coding gene gene with protein product Approved 10q23.32 10q23.32 "TAFII170|TAF172|MOT1|TAF-172|TAF(II)170" Mot1 homolog (S. cerevisiae) "BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170 kD (Mot1 homolog, S. cerevisiae)|BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa" 2001-12-03 2015-11-20 2016-10-05 9044 ENSG00000095564 OTTHUMG00000018752 uc001khr.4 AJ001017 NM_003972 CCDS7419 O14981 "9342322|9488487" MGI:2147538 RGD:1564130 BTAF1 605191 +HGNC:1120 BTBD1 BTB domain containing 1 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 BTB (POZ) domain containing 1 BTB domain containing 861 2000-05-02 2016-02-12 2016-10-05 53339 ENSG00000064726 OTTHUMG00000147364 uc002bjn.4 AF355402 XR_931846 "CCDS10322|CCDS32313" Q9H0C5 MGI:1933765 RGD:1310962 BTBD1 608530 +HGNC:15504 BTBD2 BTB domain containing 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 BTB (POZ) domain containing 2 BTB domain containing 861 2001-04-05 2016-02-12 2016-02-12 55643 ENSG00000133243 OTTHUMG00000180017 uc002lup.2 AF355797 XM_005259593 CCDS12078 Q9BX70 11179693 MGI:1933831 RGD:1566094 BTBD2 608531 +HGNC:15854 BTBD3 BTB domain containing 3 protein-coding gene gene with protein product Approved 20p12.2 20p12.2 "KIAA0952|dJ742J24.1" BTB (POZ) domain containing 3 BTB domain containing 861 2001-06-21 2016-02-12 2016-02-12 22903 ENSG00000132640 OTTHUMG00000031889 uc002wny.5 AB023169 XM_017027728 "CCDS13113|CCDS13114" Q9Y2F9 MGI:2385155 RGD:1311623 BTBD3 615566 +HGNC:19897 BTBD6 BTB domain containing 6 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 BDPL BTB (POZ) domain containing 6 BTB domain containing 861 2002-12-03 2016-02-12 2016-04-25 90135 ENSG00000184887 OTTHUMG00000029887 uc059fzp.1 AF353674 XM_005268188 CCDS10002 Q96KE9 MGI:3026623 RGD:1597323 BTBD6 +HGNC:51542 BTBD6P1 BTB domain containing 6 pseudogene 1 pseudogene pseudogene Approved 1p36.11 01p36.11 BTB (POZ) domain containing 6 pseudogene 1 2015-02-26 2016-02-12 2016-02-12 646330 ENSG00000229106 OTTHUMG00000013894 NG_011624 PGOHUM00000295588 +HGNC:18269 BTBD7 BTB domain containing 7 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "FLJ10648|FUP1" BTB (POZ) domain containing 7 BTB domain containing 861 2003-12-10 2016-02-12 2016-10-05 55727 ENSG00000011114 OTTHUMG00000171269 uc001ybo.5 AB040958 NM_001002860 "CCDS32146|CCDS32147|CCDS73684" Q9P203 "10819331|11527404" MGI:1917858 RGD:1306262 BTBD7 610386 +HGNC:44875 BTBD7P1 BTB domain containing 7 pseudogene 1 pseudogene pseudogene Approved 10p13 10p13 BTB (POZ) domain containing 7 pseudogene 1 2012-12-10 2016-02-12 2016-02-12 441548 ENSG00000203414 OTTHUMG00000017686 NG_022140 PGOHUM00000238354 +HGNC:44876 BTBD7P2 BTB domain containing 7 pseudogene 2 pseudogene pseudogene Approved 10q25.2 10q25.2 BTB (POZ) domain containing 7 pseudogene 2 2012-12-10 2016-02-12 2016-02-12 100420392 ENSG00000237618 OTTHUMG00000019053 NG_025540 PGOHUM00000238923 +HGNC:21019 BTBD8 BTB domain containing 8 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 BTB (POZ) domain containing 8 BTB domain containing 861 2004-04-02 2016-02-12 2016-02-12 284697 ENSG00000189195 OTTHUMG00000010289 uc001doo.5 AY346333 NM_183242 CCDS737 Q5XKL5 14654994 MGI:3646208 BTBD8 +HGNC:21228 BTBD9 BTB domain containing 9 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "KIAA1880|dJ322I12.1" BTB (POZ) domain containing 9 BTB domain containing 861 2003-05-29 2016-02-12 2016-10-05 114781 ENSG00000183826 OTTHUMG00000014634 uc010jwx.4 NM_152733 "CCDS43458|CCDS47418|CCDS54998" Q96Q07 11572484 MGI:1916625 RGD:1306975 BTBD9 611237 +HGNC:40959 BTBD9-AS1 BTBD9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.2 06p21.2 BTBD9 antisense RNA 1 (non-protein coding) 2011-07-04 2012-08-15 2014-11-19 100505567 ENSG00000226533 OTTHUMG00000014632 uc063ohe.1 +HGNC:21445 BTBD10 BTB domain containing 10 protein-coding gene gene with protein product Approved 11p15.3 11p15.3 "GMRP1|GMRP-1|MGC13007" BTB (POZ) domain containing 10 BTB domain containing 861 2005-08-12 2016-02-12 2016-10-05 84280 ENSG00000148925 OTTHUMG00000165787 uc001mkz.4 AY221959 NM_032320 "CCDS7811|CCDS73261|CCDS76388" Q9BSF8 15556295 MGI:1916065 RGD:1306301 BTBD10 615933 +HGNC:51540 BTBD10P1 BTB domain containing 10 pseudogene 1 pseudogene pseudogene Approved 12q13.13 12q13.13 BTB (POZ) domain containing 10 pseudogene 1 2015-02-26 2016-02-12 2016-02-12 100128678 ENSG00000257675 OTTHUMG00000169767 NG_021719 PGOHUM00000291668 +HGNC:51541 BTBD10P2 BTB domain containing 10 pseudogene 2 pseudogene pseudogene Approved 6q25.1 06q25.1 BTB (POZ) domain containing 10 pseudogene 2 2015-02-26 2016-02-12 2016-02-12 100420401 ENSG00000219433 OTTHUMG00000015797 NG_025984 PGOHUM00000301982 +HGNC:23844 BTBD11 BTB domain containing 11 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "FLJ33957|ABTB2B" BTB (POZ) domain containing 11 "Ankyrin repeat domain containing|BTB domain containing" "403|861" 2003-12-15 2016-02-12 2016-10-05 121551 ENSG00000151136 OTTHUMG00000150413 uc001tmk.2 AK091276 NM_152322 "CCDS31893|CCDS41827" A6QL63 MGI:1921257 RGD:1308647 BTBD11 +HGNC:26340 BTBD16 BTB domain containing 16 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "FLJ25359|Em:AC061711.1" C10orf87 "chromosome 10 open reading frame 87|BTB (POZ) domain containing 16" BTB domain containing 861 2004-03-16 2006-07-04 2016-02-12 2016-02-12 118663 ENSG00000138152 OTTHUMG00000019182 uc001lgc.2 AK058088 NM_144587 CCDS31301 Q32M84 MGI:3045247 RGD:1311454 BTBD16 +HGNC:33758 BTBD17 BTB domain containing 17 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "LGALS3BPL|BTBD17A|TANGO10A" transport and golgi organization 10 homolog A (Drosophila) BTB (POZ) domain containing 17 BTB domain containing 861 2008-07-25 2016-02-12 2016-02-12 388419 ENSG00000204347 OTTHUMG00000178580 uc002jkn.3 NM_001080466 CCDS32719 A6NE02 MGI:1919264 RGD:1563331 BTBD17 +HGNC:37214 BTBD18 BTB domain containing 18 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 BTB (POZ) domain containing 18 BTB domain containing 861 2009-09-08 2016-02-12 2016-02-12 643376 ENSG00000233436 OTTHUMG00000167203 uc010rjy.3 NM_001145101 CCDS44603 B2RXH4 MGI:3650217 RGD:2323370 BTBD18 +HGNC:27145 BTBD19 BTB domain containing 19 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 BTB (POZ) domain containing 19 BTB domain containing 861 2009-10-01 2016-02-12 2016-02-12 149478 ENSG00000222009 OTTHUMG00000008493 uc010ole.1 NM_001136537 C9JJ37 MGI:1925861 RGD:2320529 BTBD19 +HGNC:1121 BTC betacellulin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 1994-07-21 2014-11-19 685 ENSG00000174808 OTTHUMG00000130107 uc003hig.3 S55606 XM_017008568 CCDS3566 P35070 "8439318|11522793" MGI:99439 RGD:620275 BTC 600345 +HGNC:1122 BTD biotinidase protein-coding gene gene with protein product Approved 3p25.1 03p25.1 1994-03-30 2016-10-05 686 ENSG00000169814 OTTHUMG00000129861 uc003cah.5 AF018631 NM_000060 "CCDS2628|CCDS63563|CCDS63564|CCDS63565" P43251 8001986 MGI:1347001 RGD:1305316 BTD 609019 119092 3.5.1.12 +HGNC:1125 BTF3 basic transcription factor 3 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "BTF3a|BTF3b" NACB nascent-polypeptide-associated complex beta polypeptide 1993-09-28 2016-10-05 689 ENSG00000145741 OTTHUMG00000102031 uc003kcq.2 M90352 NM_001207 "CCDS4019|CCDS34185" P20290 "2320128|1386332|15716105" MGI:1202875 RGD:1308095 BTF3 602542 +HGNC:30547 BTF3L4 basic transcription factor 3 like 4 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 MGC23908 2005-05-26 2016-06-28 2016-06-28 91408 ENSG00000134717 OTTHUMG00000008960 uc001ctk.4 BC021004 NM_152265 "CCDS30713|CCDS44146|CCDS58001" Q96K17 12477932 MGI:1915312 RGD:1311774 BTF3L4 +HGNC:39645 BTF3L4P1 basic transcription factor 3 like 4 pseudogene 1 pseudogene pseudogene Approved 21q21.1 21q21.1 2011-03-18 2016-06-28 2016-06-28 100505945 ENSG00000232260 OTTHUMG00000074502 NG_028972 PGOHUM00000239042 +HGNC:39646 BTF3L4P2 basic transcription factor 3 like 4 pseudogene 2 pseudogene pseudogene Approved 2q24.2 02q24.2 2011-03-18 2016-06-28 2016-06-28 653189 ENSG00000213189 OTTHUMG00000153946 NG_006120 PGOHUM00000241001 +HGNC:39647 BTF3L4P3 basic transcription factor 3 like 4 pseudogene 3 pseudogene pseudogene Approved 6q23.3 06q23.3 2011-03-18 2016-06-28 2016-06-28 391040 ENSG00000213108 OTTHUMG00000015658 NG_030609 PGOHUM00000243392 +HGNC:39648 BTF3L4P4 basic transcription factor 3 like 4 pseudogene 4 pseudogene pseudogene Approved 4q32.3 04q32.3 2011-03-18 2016-06-28 2016-06-28 100506061 ENSG00000229226 OTTHUMG00000161472 NG_028949 PGOHUM00000250739 +HGNC:1129 BTF3P1 basic transcription factor 3, pseudogene 1 pseudogene pseudogene Approved 8q11.23 08q11.23 HUMBTFA lambda h16 1997-12-12 2016-10-05 693 ENSG00000254225 OTTHUMG00000164245 M90353 NG_001086 1386332 PGOHUM00000303202 +HGNC:19924 BTF3P2 basic transcription factor 3, pseudogene 2 pseudogene pseudogene Approved 14q12 14q12 2003-01-13 2014-11-19 283631 ENSG00000258282 OTTHUMG00000170386 NG_002470 PGOHUM00000247752 +HGNC:31100 BTF3P3 basic transcription factor 3, pseudogene 3 pseudogene pseudogene Approved 8p21.3 08p21.3 2005-10-06 2014-11-19 652964 NG_005367 PGOHUM00000249592 +HGNC:38566 BTF3P4 basic transcription factor 3 pseudogene 4 pseudogene pseudogene Approved 9q21.13 09q21.13 2010-06-18 2010-06-18 2014-11-19 392350 ENSG00000224820 OTTHUMG00000020004 NG_005362 PGOHUM00000236207 +HGNC:38565 BTF3P5 basic transcription factor 3 pseudogene 5 pseudogene pseudogene Approved 2p16.1 02p16.1 2010-06-18 2014-11-19 652959 ENSG00000233594 OTTHUMG00000152119 NG_005363 PGOHUM00000250428 +HGNC:23765 BTF3P6 basic transcription factor 3 pseudogene 6 pseudogene pseudogene Approved 21q22.11 21q22.11 2010-06-17 2010-06-18 2010-06-18 2014-11-19 100499261 ENSG00000233956 OTTHUMG00000065805 NG_023442 PGOHUM00000264288 +HGNC:38569 BTF3P7 basic transcription factor 3 pseudogene 7 pseudogene pseudogene Approved 6p25.1 06p25.1 2010-06-18 2014-11-18 652960 ENSG00000219986 OTTHUMG00000014194 NG_005364 PGOHUM00000243052 +HGNC:38572 BTF3P8 basic transcription factor 3 pseudogene 8 pseudogene pseudogene Approved Xq11.1 Xq11.1 2010-06-18 2010-06-18 2014-11-19 652961 ENSG00000236813 OTTHUMG00000021701 NG_005365 PGOHUM00000241808 +HGNC:38573 BTF3P9 basic transcription factor 3 pseudogene 9 pseudogene pseudogene Approved 1q42.13 01q42.13 2010-06-18 2014-11-19 503543 ENSG00000224834 OTTHUMG00000037616 NG_004831 PGOHUM00000251147 +HGNC:38570 BTF3P10 basic transcription factor 3 pseudogene 10 pseudogene pseudogene Approved 6q25.1 06q25.1 RAET1J retinoic acid early transcript 1J pseudogene 2010-06-18 2014-11-19 345829 ENSG00000231120 OTTHUMG00000015813 NG_005361 11827464 PGOHUM00000243818 +HGNC:1126 BTF3P11 basic transcription factor 3 pseudogene 11 pseudogene pseudogene Approved 13q22.3 13q22.3 "HUMBTFB|TNFRSF11B|OPG|OCIF" "lambda h27A|BTF3 homologue" BTF3L1 "basic transcription factor 3, like 1|basic transcription factor 3-like 1, pseudogene|basic transcription factor 3, like 1 pseudogene" 1997-12-12 2010-10-01 2010-10-01 2016-10-05 690 ENSG00000118903 OTTHUMG00000017097 M90354 NR_026983 "9325059|1386332" 602543 PGOHUM00000248635 +HGNC:1127 BTF3P12 basic transcription factor 3 pseudogene 12 pseudogene pseudogene Approved 8q13.3 08q13.3 HUMBTFC lambda h23 BTF3L2 "basic transcription factor 3, like 2|basic transcription factor 3-like 2, pseudogene" 1997-12-12 2010-10-01 2010-10-01 2014-11-18 652963 ENSG00000213003 OTTHUMG00000164435 M90355 NG_005366 1386332 603738 PGOHUM00000249707 +HGNC:1128 BTF3P13 basic transcription factor 3 pseudogene 13 pseudogene pseudogene Approved 4q23 04q23 HUMBTFD lambda h33 BTF3L3 "basic transcription factor 3, like 3|basic transcription factor 3-like 3, pseudogene" 1997-12-12 2010-10-01 2010-10-01 2014-11-19 132556 ENSG00000227118 OTTHUMG00000161089 M90356 NG_006070 1386332 BTF3P13 603739 PGOHUM00000246009 +HGNC:38571 BTF3P14 basic transcription factor 3 pseudogene 14 pseudogene pseudogene Approved 17p13.2 17p13.2 2010-06-18 2014-11-18 100132641 ENSG00000262609 OTTHUMG00000177820 NG_022441 PGOHUM00000236912 +HGNC:38567 BTF3P15 basic transcription factor 3 pseudogene 15 pseudogene pseudogene Approved 10q25.1 10q25.1 2010-06-18 2010-06-18 2014-11-19 100130409 ENSG00000237242 OTTHUMG00000019026 NG_028759 PGOHUM00000238915 +HGNC:38568 BTF3P16 basic transcription factor 3 pseudogene 16 pseudogene pseudogene Approved 3q12.3 03q12.3 2010-09-29 2014-11-19 643412 NG_005360 PGOHUM00000237698 +HGNC:1130 BTG1 BTG anti-proliferation factor 1 protein-coding gene gene with protein product Approved 12q21.33 12q21.33 APRO2 B-cell translocation gene 1, anti-proliferative BTG/Tob family 1309 1993-12-14 2016-07-04 2016-07-04 694 ENSG00000133639 OTTHUMG00000170092 uc001tby.3 NM_001731 CCDS9043 P62324 15033446 MGI:88215 RGD:2224 BTG1 109580 +HGNC:37692 BTG1P1 BTG anti-proliferation factor 1 pseudogene 1 pseudogene pseudogene Approved 12p13.31 12p13.31 B-cell translocation gene 1 pseudogene 1 2010-01-14 2016-07-04 2016-07-04 100129641 ENSG00000256720 OTTHUMG00000168328 NG_016577 PGOHUM00000291536 +HGNC:1131 BTG2 BTG anti-proliferation factor 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "PC3|TIS21|MGC126063|MGC126064|APRO1" "B-cell translocation gene 2|pheochromacytoma cell-3|NGF-inducible anti-proliferative protein PC3|nerve growth factor-inducible anti-proliferative" "BTG family, member 2|BTG family member 2" BTG/Tob family 1309 2000-02-29 2016-07-04 2016-10-05 7832 ENSG00000159388 OTTHUMG00000035834 uc001gzq.4 NM_006763 CCDS1437 P78543 8944033 MGI:108384 RGD:2225 BTG2 601597 +HGNC:1132 BTG3 BTG anti-proliferation factor 3 protein-coding gene gene with protein product Approved 21q21.1 21q21.1 "ANA|tob55|APRO4" "BTG family, member 3|BTG family member 3" BTG/Tob family 1309 2000-02-29 2016-07-04 2016-07-04 10950 ENSG00000154640 OTTHUMG00000074501 uc002ykk.4 D64110 NM_006806 "CCDS13569|CCDS46636" Q14201 9632145 MGI:109532 RGD:2226 BTG3 605674 +HGNC:51543 BTG3P1 BTG anti-proliferation factor 3 pseudogene 1 pseudogene pseudogene Approved Xq25 Xq25 "BTG family, member 3 pseudogene 1|BTG family member 3 pseudogene 1" 2015-02-27 2016-07-04 2016-07-04 100419246 ENSG00000235334 OTTHUMG00000022361 NG_026879 PGOHUM00000305309 +HGNC:13862 BTG4 BTG anti-proliferation factor 4 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "PC3B|APRO3" "B-cell translocation gene 4|BTG family member 4" BTG/Tob family 1309 2000-11-15 2016-07-04 2016-07-04 54766 ENSG00000137707 OTTHUMG00000166718 uc001plj.4 AJ271351 NM_017589 CCDS8346 Q9NY30 10995567 MGI:1860140 RGD:1308809 BTG4 605673 +HGNC:51544 BTG4P1 BTG anti-proliferation factor 4 pseudogene 1 pseudogene pseudogene Approved 5p14.1 05p14.1 B-cell translocation gene 4 pseudogene 1 2015-02-27 2016-07-04 2016-07-04 106480330 ENSG00000248156 OTTHUMG00000161888 NG_044501 PGOHUM00000300532 +HGNC:1133 BTK Bruton tyrosine kinase protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "ATK|XLA|PSCTK1" Bruton's tyrosine kinase "AGMX1|IMD1" Bruton agammaglobulinemia tyrosine kinase "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 1986-01-01 2015-11-27 2016-10-12 695 ENSG00000010671 OTTHUMG00000022022 uc004ehg.3 AK057105 NM_000061 "CCDS14482|CCDS76002|CCDS76003" Q06187 8380905 MGI:88216 RGD:1359683 "BTK base: Mutation registry for X-linked agammaglobulinemia|http://structure.bmc.lu.se/idbase/BTKbase/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=BTK|LRG_128|http://www.lrg-sequence.org/LRG/LRG_128" BTK 300300 119094 objectId:1948 2.7.10.1 +HGNC:21087 BTLA B and T lymphocyte associated protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "BTLA1|CD272" "CD molecules|Immunoglobulin like domain containing" "471|594" 2003-08-20 2014-11-19 151888 ENSG00000186265 OTTHUMG00000159255 uc003dza.5 AY293286 NM_181780 "CCDS33819|CCDS43130" Q7Z6A9 12796776 MGI:2658978 RGD:1303280 BTLA 607925 CD272 +HGNC:1135 BTN1A1 butyrophilin subfamily 1 member A1 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "BT|BTN1" BTN butyrophilin, subfamily 1, member A1 "Butyrophilins|V-set domain containing|C2-set domain containing" "458|590|592" 1995-07-11 2015-12-11 2016-10-05 696 ENSG00000124557 OTTHUMG00000016358 uc003nif.5 U39576 NM_001732 CCDS4614 Q13410 "8114113|9382921" MGI:103118 RGD:1306984 BTN1A1 601610 +HGNC:51545 BTN1A1P1 butyrophilin subfamily 1 member A1 pseudogene 1 pseudogene pseudogene Approved 6p22.2 06p22.2 butyrophilin, subfamily 1, member A1 pseudogene 1 2015-02-27 2015-12-11 2015-12-11 100420941 NG_025907 PGOHUM00000301694 +HGNC:1136 BTN2A1 butyrophilin subfamily 2 member A1 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "BT2.1|BTF1|BTN2.1" butyrophilin, subfamily 2, member A1 "Butyrophilins|V-set domain containing|C2-set domain containing" "458|590|592" 1999-08-27 2015-12-11 2016-10-05 11120 ENSG00000112763 OTTHUMG00000014457 uc003nib.4 U90543 NM_007049 "CCDS4613|CCDS47390|CCDS56404|CCDS56405" Q7KYR7 "9382921|9149941" BTN2A1 613590 +HGNC:1137 BTN2A2 butyrophilin subfamily 2 member A2 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "BTF2|BT2.2|BTN2.2" butyrophilin, subfamily 2, member A2 "Butyrophilins|V-set domain containing|C2-set domain containing" "458|590|592" 1999-08-27 2015-12-11 2016-10-05 10385 ENSG00000124508 OTTHUMG00000014452 uc003nhq.4 U90550 XM_005248797 "CCDS4606|CCDS4607|CCDS56401|CCDS56402|CCDS56403" Q8WVV5 "10354554|9149941" MGI:3606486 RGD:1306973 BTN2A2 613591 +HGNC:13229 BTN2A3P butyrophilin subfamily 2 member A3, pseudogene pseudogene pseudogene Approved 6p22.2 06p22.2 BTN2.3 BTN2A3 "butyrophilin, subfamily 2, member A3|butyrophilin, subfamily 2, member A3, pseudogene" Butyrophilins 458 2001-06-25 2011-09-06 2015-12-11 2016-10-05 54718 ENSG00000124549 OTTHUMG00000014453 AL021917 NR_027795 Q96KV6 613592 PGOHUM00000260151 +HGNC:1138 BTN3A1 butyrophilin subfamily 3 member A1 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "BT3.1|BTF5|CD277|BTN3.1" butyrophilin, subfamily 3, member A1 "Butyrophilins|CD molecules|V-set domain containing|C2-set domain containing" "458|471|590|592" 1999-08-27 2015-12-11 2016-10-05 11119 ENSG00000026950 OTTHUMG00000014449 uc003nhv.3 U90552 XM_005248833 "CCDS4608|CCDS4609|CCDS47388|CCDS47389" O00481 9149941 BTN3A1 613593 CD277 +HGNC:1139 BTN3A2 butyrophilin subfamily 3 member A2 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 BTN3.2 butyrophilin, subfamily 3, member A2 "Butyrophilins|V-set domain containing" "458|590" 1999-08-27 2015-12-11 2016-10-05 11118 ENSG00000186470 OTTHUMG00000014450 uc063mgs.1 U90546 XM_006714979 "CCDS4605|CCDS56399|CCDS56400" P78410 9149941 BTN3A2 613594 +HGNC:1140 BTN3A3 butyrophilin subfamily 3 member A3 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "BTF3|BTN3.3" butyrophilin, subfamily 3, member A3 "Butyrophilins|V-set domain containing" "458|590" 1999-08-27 2015-12-11 2016-10-05 10384 ENSG00000111801 OTTHUMG00000014451 uc003nhz.3 U90548 NM_006994 "CCDS4611|CCDS4612" O00478 "10354554|9149941" BTN3A3 613595 +HGNC:1142 BTNL2 butyrophilin like 2 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "HSBLMHC1|BTL-II|BTN7" "butyrophilin-like 2 (MHC class II associated)|butyrophilin-like 2" "Butyrophilins|V-set domain containing|C2-set domain containing" "458|590|592" 2000-08-22 2016-01-06 2016-10-05 56244 ENSG00000204290 OTTHUMG00000031102 uc063nqv.1 AF186588 NM_019602 CCDS78126 Q9UIR0 "10803852|15735647" MGI:1859549 RGD:620731 BTNL2 606000 291915 +HGNC:1143 BTNL3 butyrophilin like 3 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "BTNLR|BTN9.1" butyrophilin-like receptor butyrophilin-like 3 "Butyrophilins|V-set domain containing" "458|590" 2000-08-22 2016-01-06 2016-10-05 10917 ENSG00000168903 OTTHUMG00000162091 uc003mmr.3 AB020625 NM_197975 CCDS47358 Q6UXE8 10429365 BTNL3 606192 +HGNC:26131 BTNL8 butyrophilin like 8 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "FLJ21458|BTN9.2" butyrophilin-like 8 "Butyrophilins|V-set domain containing" "458|590" 2004-04-05 2016-01-06 2016-01-06 79908 ENSG00000113303 OTTHUMG00000130932 uc003mmq.3 AK025111 NM_024850 "CCDS4459|CCDS43413|CCDS54956|CCDS54957|CCDS54958|CCDS54959" Q6UX41 12975309 BTNL8 615606 +HGNC:24176 BTNL9 butyrophilin like 9 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "FLJ32535|BTN8" butyrophilin-like 9 "Butyrophilins|V-set domain containing" "458|590" 2004-04-05 2016-01-06 2016-01-06 153579 ENSG00000165810 OTTHUMG00000133152 uc003mmt.3 AK057097 NM_152547 "CCDS4460|CCDS78104" Q6UXG8 MGI:2442439 RGD:1590287 BTNL9 +HGNC:42540 BTNL10 butyrophilin like 10 other unknown Approved 1q42.13 01q42.13 "BUTR1|BTN4" butyrophilin-like 10 "Butyrophilins|V-set domain containing" "458|590" 2012-03-27 2016-01-06 2016-01-06 100129094 ENSG00000215811 OTTHUMG00000153446 XM_001722031 A8MVZ5 MGI:2182073 RGD:1559732 +HGNC:1144 BTRC beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "bTrCP|betaTrCP|FBXW1A|Fwd1|beta-TrCP1|bTrCP1" beta-transducin repeat containing "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 1999-01-28 2012-02-23 2015-09-11 8945 ENSG00000166167 OTTHUMG00000018932 uc001kta.5 Y14153 NM_033637 "CCDS7511|CCDS7512|CCDS73183" Q9Y297 "9660940|10331953|18354483" MGI:1338871 RGD:1359721 BTRC 603482 360504 +HGNC:51546 BTRCP1 beta-transducin repeat containing E3 ubiquitin protein ligase pseudogene 1 pseudogene pseudogene Approved 6q23.3 06q23.3 2015-03-03 2015-03-09 100420631 NG_025874 PGOHUM00000301562 +HGNC:1147 BTS1 bladder tumor susceptibility 1 phenotype phenotype only Approved 10p11.23 10p11.23 1997-04-25 2011-02-10 698 9310135 +HGNC:1148 BUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding gene gene with protein product Approved 2q13 02q13 "hBUB1|BUB1A" BUB1L "budding uninhibited by benzimidazoles 1 (yeast homolog)|budding uninhibited by benzimidazoles 1 homolog (yeast)" 1997-08-18 2016-01-15 2016-01-15 699 ENSG00000169679 OTTHUMG00000153638 uc002tgc.5 AF046078 NM_004336 "CCDS33273|CCDS62984|CCDS62985" O43683 MGI:1100510 RGD:1311707 BUB1 602452 367084 objectId:1949 +HGNC:1149 BUB1B BUB1 mitotic checkpoint serine/threonine kinase B protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "BUBR1|MAD3L|Bub1A|SSK1" "budding uninhibited by benzimidazoles 1 (yeast homolog), beta|budding uninhibited by benzimidazoles 1 homolog beta (yeast)" 1998-03-25 2016-01-15 2016-10-12 701 ENSG00000156970 OTTHUMG00000129877 uc001zkx.5 AF107297 NM_001211 CCDS10053 O60566 9889005 MGI:1333889 RGD:619791 LRG_489|http://www.lrg-sequence.org/LRG/LRG_489 BUB1B 602860 119101 objectId:1950 +HGNC:49529 BUB1P1 BUB1 mitotic checkpoint serine/threonine kinase pseudogene 1 pseudogene pseudogene Approved 10q26.2 10q26.2 2014-01-08 2016-01-15 2016-01-15 100422363 ENSG00000270778 OTTHUMG00000184638 NG_025548 PGOHUM00000238967 +HGNC:1151 BUB3 BUB3, mitotic checkpoint protein protein-coding gene gene with protein product Approved 10q26.13 10q26.13 BUB3L "BUB3 (budding uninhibited by benzimidazoles 3, yeast) homolog|budding uninhibited by benzimidazoles 3 homolog (yeast)" WD repeat domain containing 362 1999-02-17 2016-03-18 2016-10-05 9184 ENSG00000154473 OTTHUMG00000019197 uc001lhe.3 AF053304 NM_004725 "CCDS7635|CCDS31306" O43684 9660858 MGI:1343463 RGD:1306654 BUB3 603719 367095 +HGNC:51559 BUB3P1 BUB3 mitotic checkpoint protein pseudogene 1 pseudogene pseudogene Approved 7q31.1 07q31.1 2015-03-05 2015-03-05 646614 ENSG00000227968 OTTHUMG00000154869 NG_009438 PGOHUM00000302391 +HGNC:28199 BUD13 BUD13 homolog protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "MGC13125|fSAP71|Cwc26" functional spliceosome-associated protein 71 "BUD13 homolog (yeast)|BUD13 homolog (S. cerevisiae)" 2006-03-10 2015-07-02 2015-07-02 84811 ENSG00000137656 OTTHUMG00000045136 uc001ppn.4 BC006350 NM_032725 "CCDS8374|CCDS53712" Q9BRD0 12477932 MGI:2443443 RGD:1308076 BUD13 +HGNC:51560 BUD13P1 BUD13 homolog pseudogene 1 pseudogene pseudogene Approved 11q21 11q21 BUD13 homolog (S. cerevisiae) pseudogene 1 2015-03-05 2015-07-02 2015-07-02 100420358 ENSG00000270689 OTTHUMG00000184754 NG_024552 PGOHUM00000291110 +HGNC:29629 BUD31 BUD31 homolog protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "YCR063W|EDG-2|EDG2|G10|fSAP17|Cwc14" "G10 maternal transcript homolog (Xenopus laevis)|functional spliceosome-associated protein 17" "BUD31 homolog (yeast)|BUD31 homolog (S. cerevisiae)" 2006-03-10 2006-03-16 2015-07-02 2015-08-24 8896 ENSG00000106245 OTTHUMG00000154602 uc003uqf.4 BC022821 NM_003910 CCDS5663 P41223 7841202 MGI:2141291 RGD:621103 BUD31 603477 +HGNC:51561 BUD31P1 BUD31 homolog pseudogene 1 pseudogene pseudogene Approved 8p12 08p12 BUD31 homolog (S. cerevisiae) pseudogene 1 2015-03-05 2015-07-02 2015-07-02 106480331 ENSG00000253684 OTTHUMG00000163963 NG_044511 PGOHUM00000303153 +HGNC:51562 BUD31P2 BUD31 homolog pseudogene 2 pseudogene pseudogene Approved Xq13.3 Xq13.3 BUD31 homolog (S. cerevisiae) pseudogene 2 2015-03-05 2015-07-02 2015-07-02 106480332 ENSG00000229661 OTTHUMG00000021861 NG_044520 PGOHUM00000305158 +HGNC:1152 BVES blood vessel epicardial substance protein-coding gene gene with protein product Approved 6q21 06q21 "HBVES|POP1|POPDC1" popeye domain containing 1 2000-01-10 2015-08-24 11149 ENSG00000112276 OTTHUMG00000015291 uc003pqy.4 AF124512 NM_147147 CCDS5051 Q8NE79 "10441744|10882522" MGI:1346013 RGD:1561100 BVES 604577 +HGNC:21223 BVES-AS1 BVES antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q21 06q21 bA99L11.2 C6orf112 "chromosome 6 open reading frame 112|BVES antisense RNA 1 (non-protein coding)" 2003-11-25 2012-02-06 2012-08-15 2014-11-18 154442 ENSG00000203808 OTTHUMG00000015292 uc063qia.1 AL137368 NR_037157 Q5T3Y7 +HGNC:1153 BVR1 Burkitt lymphoma variant rearranging region 1 other region Approved 8q24 08q24 1990-09-10 2003-07-30 700 M16601 +HGNC:1157 BYSL bystin like protein-coding gene gene with protein product Approved 6p21.1 06p21.1 bystin-like 1998-05-05 2015-11-17 2015-11-17 705 ENSG00000112578 OTTHUMG00000014687 uc003orl.4 L36720 NM_004053 CCDS34450 Q13895 "9925933|17381424" MGI:1858419 RGD:727959 BYSL 603871 +HGNC:18380 BZW1 basic leucine zipper and W2 domains 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "BZAP45|KIAA0005" 2002-08-05 2016-10-05 9689 ENSG00000082153 OTTHUMG00000154560 uc002uwc.4 D13630 NM_014670 "CCDS56154|CCDS56155|CCDS56156" Q7L1Q6 "10964520|11524015" MGI:1914132 RGD:735129 BZW1 +HGNC:31378 BZW1P1 basic leucine zipper and W2 domains 1 pseudogene 1 pseudogene pseudogene Approved 3q26.31 03q26.31 2005-10-06 2015-03-25 391592 ENSG00000236686 OTTHUMG00000156945 NG_008827 PGOHUM00000299270 +HGNC:33954 BZW1P2 basic leucine zipper and W2 domains 1 pseudogene 2 pseudogene pseudogene Approved 3q13.31 03q13.31 BZW1L1 basic leucine zipper and W2 domains 1 like 1 2008-01-24 2010-10-01 2010-10-01 2014-11-19 151579 ENSG00000198406 OTTHUMG00000159328 NG_022890 PGOHUM00000237731 +HGNC:18808 BZW2 basic leucine zipper and W2 domains 2 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "HSPC028|MST017|MSTP017" 2002-08-05 2016-10-05 28969 ENSG00000136261 OTTHUMG00000130755 uc003stj.3 AF083246 NM_014038 CCDS5362 Q9Y6E2 11042152 MGI:1914162 RGD:621507 BZW2 +HGNC:29911 C1D C1D nuclear receptor corepressor protein-coding gene gene with protein product Approved 2p14 02p14 "SUNCOR|SUN-CoR|LRP1|Rrp47" small unique nuclear receptor co-repressor C1D nuclear receptor co-repressor 2009-02-06 2010-06-10 2016-10-05 10438 ENSG00000197223 OTTHUMG00000129564 uc002seb.4 NM_006333 CCDS1883 Q13901 "9469821|17599775|17412707|11801738|9405624" MGI:1927354 RGD:1560600 C1D 606997 +HGNC:31465 C1DP1 C1D nuclear receptor corepressor pseudogene 1 pseudogene pseudogene Approved 10p11.22 10p11.22 bA195O1.1 C1D nuclear receptor co-repressor pseudogene 1 2010-03-23 2010-06-10 2016-10-05 554049 ENSG00000231245 OTTHUMG00000017927 NG_005140 +HGNC:31660 C1DP2 C1D nuclear receptor corepressor pseudogene 2 pseudogene pseudogene Approved 10q22.3 10q22.3 bA369J21.3 C1D nuclear receptor co-repressor pseudogene 2 2010-03-23 2010-06-10 2014-11-19 642538 ENSG00000236217 OTTHUMG00000018599 XM_926027 PGOHUM00000238559 +HGNC:31661 C1DP3 C1D nuclear receptor corepressor pseudogene 3 pseudogene pseudogene Approved 10q22.3 10q22.3 bA369J21.2 C1D nuclear receptor co-repressor pseudogene 3 2010-03-23 2010-06-10 2014-11-19 642521 ENSG00000224760 OTTHUMG00000018598 NG_021448 PGOHUM00000238558 +HGNC:38028 C1DP4 C1D nuclear receptor corepressor pseudogene 4 pseudogene pseudogene Approved 10q22.3 10q22.3 C1D nuclear receptor co-repressor pseudogene 4 2010-03-23 2010-06-10 2014-11-19 727879 ENSG00000227515 OTTHUMG00000018600 NG_021449 PGOHUM00000238560 +HGNC:51613 C1DP5 C1D nuclear receptor corepressor pseudogene 5 pseudogene pseudogene Approved 11q14.1 11q14.1 2015-03-25 2015-03-25 106481729 ENSG00000254965 OTTHUMG00000167014 NG_043453 PGOHUM00000290610 +HGNC:24337 C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding gene gene with protein product Approved 7p22.1-p21.3 07p22.1-p21.3 "C1GALT|T-synthase" core 1 beta3-Gal-T Beta 3-glycosyltransferases 426 2005-01-26 2014-06-24 2016-10-11 56913 ENSG00000106392 OTTHUMG00000151912 uc003srb.4 AF155582 NM_020156 CCDS5355 Q9NS00 "10580128|11677243" MGI:2151071 RGD:621105 C1GALT1 610555 2.4.1.122 +HGNC:24338 C1GALT1C1 C1GALT1 specific chaperone 1 protein-coding gene gene with protein product Approved Xq24 Xq24 "COSMC|C1GALT2" 2005-01-26 2015-11-11 2015-11-11 29071 ENSG00000171155 OTTHUMG00000022305 uc004esz.4 AJ238398 NM_152692 CCDS14602 Q96EU7 "11042152|12361956" MGI:1913493 RGD:1311230 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=C1GALT1C1 C1GALT1C1 300611 +HGNC:51617 C1GALT1C1L C1GALT1-specific chaperone 1 like protein-coding gene gene with protein product Approved 2p21 02p21 2015-04-08 2015-04-08 728819 ENSG00000223658 OTTHUMG00000152807 NM_001101330 CCDS82442 P0DN25 +HGNC:51614 C1GALT1P1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 12q15 12q15 2015-03-25 2015-03-25 729409 ENSG00000257818 OTTHUMG00000169341 NG_021725 PGOHUM00000291722 +HGNC:51615 C1GALT1P2 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 pseudogene 2 pseudogene pseudogene Approved 5q11.2 05q11.2 ore 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 pseudogene 2 2015-03-25 2016-07-13 2016-07-13 100128603 ENSG00000251435 OTTHUMG00000162308 NG_021881 PGOHUM00000300958 +HGNC:51616 C1GALT1P3 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 pseudogene 3 pseudogene pseudogene Approved 8q12.3 08q12.3 2015-03-25 2015-03-25 106481730 ENSG00000253544 OTTHUMG00000164341 NG_043459 PGOHUM00000303222 +HGNC:1227 C1HR entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-02-07 +HGNC:1236 C1orf5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-01-11 +HGNC:16786 C1orf20 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-28 +HGNC:15494 C1orf21 chromosome 1 open reading frame 21 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 PIG13 proliferation-inducing protein 13 2001-04-27 2016-10-05 81563 ENSG00000116667 OTTHUMG00000035386 uc001gqv.2 AF312864 NM_030806 CCDS1362 Q9H246 11318611 MGI:1916649 RGD:1309104 C1orf21 +HGNC:24299 C1orf27 chromosome 1 open reading frame 27 protein-coding gene gene with protein product Approved 1q31.1 01q31.1 "FLJ20505|odr-4|TTG1" transactivated by recombinant transforming growth factor beta 2004-11-30 2016-10-05 54953 ENSG00000157181 OTTHUMG00000035579 uc057nzd.1 BC003397 NM_017847 "CCDS53448|CCDS53449|CCDS53450" Q5SWX8 "12868032|24603482" MGI:2385108 RGD:1307830 C1orf27 609335 +HGNC:19032 C1orf35 chromosome 1 open reading frame 35 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "MGC4174|MMTAG2" multiple myeloma tumor-associated protein 2 2002-08-19 2016-09-30 79169 ENSG00000143793 OTTHUMG00000037793 uc001hrx.4 AY137773 NM_024319 CCDS1566 Q9BU76 12545221 MGI:1915112 RGD:1304587 C1orf35 +HGNC:29876 C1orf43 chromosome 1 open reading frame 43 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "NICE-3|DKFZp586G1722" 2004-09-14 2016-10-05 25912 ENSG00000143612 OTTHUMG00000035981 uc001fei.3 AF077036 NM_015449 "CCDS1061|CCDS1062|CCDS41404|CCDS72924|CCDS76219|CCDS76220" Q9BWL3 "11042152|11230159" MGI:1914027 RGD:1359625 C1orf43 +HGNC:28795 C1orf50 chromosome 1 open reading frame 50 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 MGC955 2005-01-31 2016-09-30 79078 ENSG00000164008 OTTHUMG00000007568 uc001cia.5 BC001711 NM_024097 CCDS473 Q9BV19 12477932 MGI:2140466 RGD:1564804 C1orf50 +HGNC:24871 C1orf52 chromosome 1 open reading frame 52 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "gm117|FLJ44982" 2005-02-09 2016-09-30 148423 ENSG00000162642 OTTHUMG00000009966 uc001dkv.4 BC029538 NM_198077 CCDS703 Q8N6N3 11891061 MGI:1913671 RGD:1560065 C1orf52 +HGNC:30003 C1orf53 chromosome 1 open reading frame 53 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 2005-05-19 2016-09-30 388722 ENSG00000203724 OTTHUMG00000035659 uc001guh.4 BC038214 NM_001024594 CCDS44290 Q5VUE5 15897902 MGI:1916799 RGD:1566099 C1orf53 +HGNC:26258 C1orf54 chromosome 1 open reading frame 54 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 FLJ23221 2005-04-21 2016-09-30 79630 ENSG00000118292 OTTHUMG00000012546 uc057kns.1 BC017761 NM_024579 "CCDS948|CCDS72905" Q8WWF1 12477932 MGI:2385885 C1orf54 +HGNC:26045 C1orf56 chromosome 1 open reading frame 56 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "FLJ20519|MENT" methylated in normal thymocytes 2005-04-22 2016-10-05 54964 ENSG00000143443 OTTHUMG00000035159 uc001ewn.4 BC002469 NM_017860 CCDS980 Q9BUN1 "12975309|22133874" MGI:2684974 RGD:1359334 C1orf56 +HGNC:30780 C1orf61 chromosome 1 open reading frame 61 protein-coding gene gene with protein product Approved 1q22 01q22 CROC4 "contingent replication of cDNA-4|transcriptional activator of the c fos promoter" 2005-06-01 2016-09-30 10485 ENSG00000125462 OTTHUMG00000031022 uc001fou.2 NM_006365 CCDS1142 Q13536 "10995546|23012322" C1orf61 +HGNC:28339 C1orf64 chromosome 1 open reading frame 64 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "MGC24047|ERRF" ER-related factor 2005-05-16 2016-09-30 149563 ENSG00000183888 OTTHUMG00000009523 uc001axn.4 AK127425 NM_178840 CCDS166 Q8NEQ6 22341523 MGI:2685540 RGD:1566083 C1orf64 +HGNC:29468 C1orf68 chromosome 1 open reading frame 68 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "LEP7|XP32" skin-specific protein 32 2005-05-18 2016-09-30 100129271 ENSG00000198854 OTTHUMG00000012401 uc010pdu.3 AF005081 NM_001024679 CCDS44226 Q5T750 11698679 MGI:1913783 RGD:1585456 C1orf68 +HGNC:26319 C1orf74 chromosome 1 open reading frame 74 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 FLJ25078 2005-05-19 2016-09-30 148304 ENSG00000162757 OTTHUMG00000036483 uc001hhp.2 AK057807 NM_152485 CCDS1491 Q96LT6 12477932 MGI:2441776 RGD:1642423 C1orf74 +HGNC:28547 C1orf87 chromosome 1 open reading frame 87 protein-coding gene gene with protein product Approved 1p32.1 01p32.1 "MGC34837|CREF" carcinoma-related EF-hand protein 2005-05-27 2016-09-30 127795 ENSG00000162598 OTTHUMG00000008992 uc001czs.3 AK124828 NM_152377 CCDS614 Q8N0U7 25048349 MGI:3650206 RGD:1560146 C1orf87 +HGNC:28250 C1orf94 chromosome 1 open reading frame 94 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 MGC15882 2005-05-31 2016-10-05 84970 ENSG00000142698 OTTHUMG00000004012 uc001bxt.4 AK123355 NM_032884 "CCDS381|CCDS44108" Q6P1W5 25048349 MGI:3616080 RGD:1586982 C1orf94 +HGNC:30435 C1orf100 chromosome 1 open reading frame 100 protein-coding gene gene with protein product Approved 1q44 01q44 2005-05-31 2016-09-30 200159 ENSG00000173728 OTTHUMG00000040104 uc001iah.5 BC054479 NM_001012970 "CCDS31079|CCDS60465" Q5SVJ3 MGI:1916678 RGD:1588722 C1orf100 +HGNC:28491 C1orf101 chromosome 1 open reading frame 101 protein-coding gene gene with protein product Approved 1q44 01q44 MGC33370 2005-05-31 2016-09-30 257044 ENSG00000179397 OTTHUMG00000040103 uc001ial.4 BC032859 NM_173807 "CCDS1625|CCDS44340|CCDS55693" Q5SY80 12477932 "MGI:3647531|MGI:5589632" RGD:1565309 C1orf101 +HGNC:29591 C1orf105 chromosome 1 open reading frame 105 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 2005-06-03 2016-09-30 92346 ENSG00000180999 OTTHUMG00000034750 uc001gik.3 AL035295 NM_139240 "CCDS1301|CCDS72983" O95561 12477932 MGI:1922618 RGD:1309106 C1orf105 +HGNC:25599 C1orf106 chromosome 1 open reading frame 106 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 FLJ10901 2005-06-03 2016-09-30 55765 ENSG00000163362 OTTHUMG00000035789 uc010ppm.3 AK001763 NM_018265 CCDS44292 Q3KP66 14702039 MGI:1921579 RGD:1311892 C1orf106 +HGNC:26039 C1orf109 chromosome 1 open reading frame 109 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ20508 2005-06-03 2016-09-30 54955 ENSG00000116922 OTTHUMG00000004323 uc001cbp.3 AK000515 NM_017850 CCDS423 Q9NX04 22548824 MGI:3041172 RGD:1560436 C1orf109 614799 +HGNC:27648 C1orf111 chromosome 1 open reading frame 111 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 2005-06-07 2016-09-30 284680 ENSG00000171722 OTTHUMG00000031375 uc001gbx.3 BC032957 NM_182581 CCDS1238 Q5T0L3 12477932 MGI:1924175 RGD:1565283 C1orf111 +HGNC:25565 C1orf112 chromosome 1 open reading frame 112 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 FLJ10706 2005-06-08 2016-09-30 55732 ENSG00000000460 OTTHUMG00000035821 uc001ggp.4 AL354614 NM_018186 "CCDS1285|CCDS81400|CCDS81401" Q9NSG2 12477932 MGI:3590554 RGD:1563470 C1orf112 +HGNC:25873 C1orf115 chromosome 1 open reading frame 115 protein-coding gene gene with protein product Approved 1q41 01q41 FLJ14146 2005-06-10 2016-09-30 79762 ENSG00000162817 OTTHUMG00000037361 uc001hmp.2 AK024208 NM_024709 CCDS1524 Q9H7X2 12477932 MGI:2444831 RGD:1310587 C1orf115 +HGNC:28667 C1orf116 chromosome 1 open reading frame 116 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "SARG|FLJ36507|MGC2742|MGC4309" specifically androgen-regulated gene 2005-06-30 2016-09-30 79098 ENSG00000182795 OTTHUMG00000036580 uc001hfd.3 NM_024115 "CCDS1475|CCDS44306" Q9BW04 "15525603|9389513" MGI:2138143 RGD:1565034 C1orf116 611680 +HGNC:24789 C1orf122 chromosome 1 open reading frame 122 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ45459 2005-06-21 2005-08-09 2016-09-30 127687 ENSG00000197982 OTTHUMG00000004319 uc001ccd.3 AK127381 NM_198446 "CCDS427|CCDS44112" Q6ZSJ8 12477932 MGI:1916170 RGD:1559909 C1orf122 +HGNC:26059 C1orf123 chromosome 1 open reading frame 123 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 FLJ20580 2005-06-21 2016-09-30 54987 ENSG00000162384 OTTHUMG00000008940 uc001cvd.4 BC010908 NM_017887 CCDS576 Q9NWV4 21798097 MGI:1921348 RGD:1559786 C1orf123 +HGNC:26730 C1orf127 chromosome 1 open reading frame 127 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 FLJ37118 2005-06-23 2016-09-30 148345 ENSG00000175262 OTTHUMG00000002032 uc010oao.2 AK094437 NM_173507 CCDS53267 Q8N9H9 14702039 MGI:2685418 RGD:1585063 C1orf127 +HGNC:25332 C1orf131 chromosome 1 open reading frame 131 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 DKFZp547B1713 2005-06-30 2016-09-30 128061 ENSG00000143633 OTTHUMG00000038023 uc001hul.4 BC062353 NM_152379 "CCDS1591|CCDS73049" Q8NDD1 12975309 MGI:1913773 RGD:1562218 C1orf131 +HGNC:32018 C1orf132 chromosome 1 open reading frame 132 other unknown Approved 1q32.2 01q32.2 FLJ35650 2005-06-30 2016-09-30 100128537 ENSG00000203709 OTTHUMG00000036553 uc021pik.4 AK092969 NR_135298 14702039 C1orf132 +HGNC:32021 C1orf134 chromosome 1 open reading frame 134 other unknown Approved 1p36.13 01p36.13 2005-06-30 2016-09-30 574037 AL109627 Q5TEV5 C1orf134 +HGNC:32039 C1orf136 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:32040 C1orf137 chromosome 1 open reading frame 137 other unknown Approved 1p13.1 01p13.1 2005-07-08 2016-09-30 388667 ENSG00000203864 OTTHUMG00000022754 uc031una.2 NM_001013643 Q5JT78 C1orf137 +HGNC:32042 C1orf140 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:32044 C1orf141 chromosome 1 open reading frame 141 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 2005-07-08 2016-10-05 400757 ENSG00000203963 OTTHUMG00000009406 uc057hjb.1 BC090886 NM_001013674 "CCDS30745|CCDS72804" Q5JVX7 MGI:1918191 RGD:1562532 C1orf141 +HGNC:32045 C1orf143 chromosome 1 open reading frame 143 other unknown Approved 1q41 01q41 2005-07-08 2016-09-30 440714 ENSG00000228208 OTTHUMG00000039569 uc057pme.1 +HGNC:32047 C1orf145 chromosome 1 open reading frame 145 other unknown Approved 1q42.13 01q42.13 FLJ31994 2005-07-11 2016-09-30 574407 ENSG00000162913 OTTHUMG00000039770 uc057qdy.1 AK056556 NR_073154 Q96MR7 +HGNC:24032 C1orf146 chromosome 1 open reading frame 146 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 2005-07-11 2016-09-30 388649 ENSG00000203910 OTTHUMG00000010285 uc001doq.4 NM_001012425 CCDS30772 Q5VVC0 15496913 MGI:1923671 RGD:1586315 C1orf146 +HGNC:32061 C1orf147 chromosome 1 open reading frame 147 other unknown Approved 1q32.1 01q32.1 FLJ32597 2005-07-12 2016-09-30 574431 ENSG00000162888 OTTHUMG00000036338 uc057owx.1 AK057159 Q96MC9 C1orf147 +HGNC:28567 C1orf158 chromosome 1 open reading frame 158 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 MGC35194 2005-07-15 2016-09-30 93190 ENSG00000157330 OTTHUMG00000001888 uc001auh.4 BX647383 NM_152290 "CCDS147|CCDS81264" Q8N1D5 12477932 MGI:1916614 RGD:1587426 C1orf158 +HGNC:26062 C1orf159 chromosome 1 open reading frame 159 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ20584 2005-07-15 2016-09-30 54991 ENSG00000131591 OTTHUMG00000000745 uc001acu.3 AK128434 NM_017891 "CCDS7|CCDS81250" Q96HA4 12975309 MGI:2444364 RGD:1311517 C1orf159 +HGNC:28344 C1orf162 chromosome 1 open reading frame 162 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 MGC24133 2005-07-15 2016-09-30 128346 ENSG00000143110 OTTHUMG00000011750 uc001ebe.4 BC017973 NM_174896 "CCDS837|CCDS72837" Q8NEQ5 12477932 MGI:3588284 RGD:2323412 C1orf162 +HGNC:25262 C1orf167 chromosome 1 open reading frame 167 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "DKFZp434E1410|RP11-56N19.2" 2005-07-20 2016-09-30 284498 ENSG00000215910 OTTHUMG00000002228 uc057chg.1 AL834308 XM_011541272 Q5SNV9 12370778 RGD:7658417 C1orf167 +HGNC:27295 C1orf168 chromosome 1 open reading frame 168 protein-coding gene gene with protein product Approved 1p32.2 01p32.2 "RP4-758N20.2|FLJ43208" 2005-07-20 2016-09-30 199920 ENSG00000187889 OTTHUMG00000008281 uc001cym.5 BX648439 NM_001004303 CCDS30729 Q5VWT5 14702039 MGI:2685466 RGD:1564074 C1orf168 +HGNC:27915 C1orf174 chromosome 1 open reading frame 174 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 RP13-531C17.2 2005-07-21 2016-09-30 339448 ENSG00000198912 OTTHUMG00000003739 uc001alf.4 BC035643 NM_207356 CCDS53 Q8IYL3 12477932 MGI:2140680 RGD:1304567 C1orf174 +HGNC:28096 C1orf185 chromosome 1 open reading frame 185 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 FLJ27485 2005-08-11 2016-09-30 284546 ENSG00000204006 OTTHUMG00000008084 uc001csh.4 AK130995 NM_001136508 CCDS44142 Q5T7R7 MGI:1914896 RGD:1591038 C1orf185 +HGNC:25341 C1orf186 chromosome 1 open reading frame 186 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 FLJ16052 2005-08-12 2016-09-30 440712 ENSG00000263961 OTTHUMG00000184376 uc001hdt.3 AK122631 NM_001007544 CCDS73014 Q6ZWK4 25092874 C1orf186 616088 +HGNC:32305 C1orf189 chromosome 1 open reading frame 189 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 2005-09-27 2016-09-30 388701 ENSG00000163263 OTTHUMG00000035982 uc001fee.3 NM_001010979 CCDS30876 Q5VU69 MGI:1920795 RGD:1564171 C1orf189 +HGNC:32329 C1orf193 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:32331 C1orf194 chromosome 1 open reading frame 194 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 2006-06-30 2016-09-30 127003 ENSG00000179902 OTTHUMG00000011735 uc009wev.4 NM_001122961 CCDS41364 Q5T5A4 MGI:1922754 RGD:1309139 C1orf194 +HGNC:32332 C1orf195 chromosome 1 open reading frame 195 other unknown Approved 1p36.21 01p36.21 2006-06-30 2016-09-30 727684 ENSG00000204464 OTTHUMG00000037852 uc057cmh.2 NM_001278501 Q5TG92 C1orf195 +HGNC:32336 C1orf196 chromosome 1 open reading frame 196 other unknown Approved 1p36.21 01p36.21 2006-06-30 2016-09-30 780789 B1AJZ1 MGI:1917975 C1orf196 +HGNC:32338 C1orf197 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:25900 C1orf198 chromosome 1 open reading frame 198 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "FLJ14525|MGC10710|FLJ16283|DKFZp667D152|FLJ38847" 2006-02-15 2016-09-30 84886 ENSG00000119280 OTTHUMG00000037790 uc001hub.4 BC066649 NM_032800 "CCDS1587|CCDS44330|CCDS44331" Q9H425 MGI:1916801 RGD:1559896 C1orf198 +HGNC:27647 C1orf204 chromosome 1 open reading frame 204 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 FLJ39187 2005-12-01 2016-10-05 284677 ENSG00000188004 OTTHUMG00000035430 uc001fug.1 AK096506 NM_001134233 CCDS44253 Q5VU13 C1orf204 +HGNC:28755 C1orf210 chromosome 1 open reading frame 210 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 MGC52423 2006-03-22 2016-09-30 149466 ENSG00000253313 OTTHUMG00000007289 uc001cit.5 BC041633 NM_182517 CCDS481 Q8IVY1 12477932 MGI:1913701 RGD:1305347 C1orf210 +HGNC:26800 C1orf216 chromosome 1 open reading frame 216 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ38984 2007-07-10 2016-09-30 127703 ENSG00000142686 OTTHUMG00000004167 uc001bzh.2 AK096303 NM_152374 CCDS395 Q8TAB5 12477932 MGI:3609248 RGD:1563072 C1orf216 +HGNC:33805 C1orf220 chromosome 1 open reading frame 220 other unknown Approved 1q25.2 01q25.2 FLJ35530 2007-11-30 2016-09-30 400798 ENSG00000213057 OTTHUMG00000035078 uc001glx.1 NR_033186 Q5T0J3 26186194 C1orf220 +HGNC:34351 C1orf226 chromosome 1 open reading frame 226 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 FLJ13137 2008-09-22 2016-09-30 400793 ENSG00000239887 OTTHUMG00000031376 uc010pkt.2 "AI480219|AK023199|AK125122|AL512785|BC127743" NM_001085375 "CCDS44268|CCDS53422" A1L170 14702039 MGI:3649135 C1orf226 +HGNC:34345 C1orf228 chromosome 1 open reading frame 228 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "MGC33556|p40" NCRNA00082 non-protein coding RNA 82 2008-09-02 2009-03-17 2009-03-17 2016-09-30 339541 ENSG00000198520 OTTHUMG00000007834 uc057fvb.1 "AL122004|AY254217|BC026115" NM_001145636 CCDS53311 Q6PIY5 12477932 MGI:2686507 RGD:1563714 C1orf228 +HGNC:33759 C1orf229 chromosome 1 open reading frame 229 other unknown Approved 1q44 01q44 FLJ45717 2009-04-14 2016-09-30 388759 ENSG00000221953 OTTHUMG00000165196 uc001icg.2 BC156415 NM_207401 Q6ZS94 C1orf229 +HGNC:44651 C1orf234 chromosome 1 open reading frame 234 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 2013-06-14 2013-12-13 2013-12-13 2016-09-30 729059 ENSG00000227868 OTTHUMG00000003226 NM_001242521 CCDS57978 H3BTG2 MGI:1914913 RGD:7515741 +HGNC:1241 C1QA complement C1q A chain protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "complement component 1, q subcomponent, alpha polypeptide|complement component 1, q subcomponent, A chain|complement C1q chain A" Complement system 492 2001-06-22 2016-07-04 2016-10-12 712 ENSG00000173372 OTTHUMG00000002893 uc001bfy.4 AF135157 NM_015991 CCDS226 P02745 1537612 MGI:88223 RGD:1306716 "C1QAbase: Mutation registry for C1qA deficiency|http://structure.bmc.lu.se/idbase/C1QAbase/index2.html|LRG_22|http://www.lrg-sequence.org/LRG/LRG_22" C1QA 120550 221162 +HGNC:1242 C1QB complement C1q B chain protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "complement component 1, q subcomponent, beta polypeptide|complement component 1, q subcomponent, B chain|complement C1q chain B" Complement system 492 2001-06-22 2016-07-04 2016-10-12 713 ENSG00000173369 OTTHUMG00000002896 uc001bgd.3 X03084 NM_000491 CCDS228 P02746 1537612 MGI:88224 RGD:2229 "C1QBbase: Mutation registry for C1qB deficiency|http://structure.bmc.lu.se/idbase/C1QBbase/|LRG_23|http://www.lrg-sequence.org/LRG/LRG_23" C1QB 120570 221166 +HGNC:1243 C1QBP complement C1q binding protein protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "gC1Q-R|gC1qR|p32|SF2p32" "C1q globular domain-binding protein|hyaluronan-binding protein 1|splicing factor SF2-associated protein" HABP1 complement component 1, q subcomponent binding protein 1995-12-11 2016-07-04 2016-10-05 708 ENSG00000108561 OTTHUMG00000177875 uc002gby.2 X75913 NM_001212 CCDS11071 Q07021 "8567680|8195709" MGI:1194505 RGD:2230 C1QBP 601269 +HGNC:1244 C1QBPP1 complement C1q binding protein pseudogene 1 pseudogene pseudogene Approved 21q21.1 21q21.1 C1QBPP "complement component 1, q subcomponent binding protein, pseudogene|complement component 1, q subcomponent binding protein, pseudogene 1" 2000-05-23 2015-03-25 2016-07-04 2016-07-04 54098 ENSG00000215353 OTTHUMG00000074605 NG_000929 PGOHUM00000297228 +HGNC:51618 C1QBPP2 complement C1q binding protein pseudogene 2 pseudogene pseudogene Approved 11q13.2 11q13.2 complement component 1, q subcomponent binding protein, pseudogene 2 2015-03-26 2016-07-04 2016-07-04 100422299 ENSG00000213409 OTTHUMG00000167165 NG_024376 PGOHUM00000290562 +HGNC:51619 C1QBPP3 complement C1q binding protein pseudogene 3 pseudogene pseudogene Approved 15q14 15q14 complement component 1, q subcomponent binding protein, pseudogene 3 2015-03-26 2016-07-04 2016-07-04 100422310 NG_025373 PGOHUM00000293198 +HGNC:1245 C1QC complement C1q C chain protein-coding gene gene with protein product Approved 1p36.12 01p36.12 C1QG "complement component 1, q subcomponent, gamma polypeptide|complement component 1, q subcomponent, C chain" Complement system 492 1991-09-12 2006-02-09 2016-07-04 2016-10-12 714 ENSG00000159189 OTTHUMG00000002891 uc001bgc.5 AK057792 NM_172369 CCDS227 P02747 1706597 MGI:88225 RGD:1306828 "C1QCbase: Mutation registry for C1qC deficiency|http://structure.bmc.lu.se/idbase/C1QCbase/|LRG_24|http://www.lrg-sequence.org/LRG/LRG_24" C1QC 120575 221168 +HGNC:24182 C1QL1 complement C1q like 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "CRF|C1QRF|C1QTNF14" complement component 1, q subcomponent-like 1 2004-05-06 2016-07-04 2016-10-05 10882 ENSG00000131094 OTTHUMG00000162944 uc002ihv.4 AF410771 NM_006688 CCDS11492 O75973 9878755 MGI:1344400 RGD:1306039 C1QL1 611586 +HGNC:51809 C1QL1P1 complement C1q like 1 pseudogene 1 pseudogene pseudogene Approved 16p11.1 16p11.1 complement component 1, q subcomponent-like 1 pseudogene 1 2015-06-09 2016-07-04 2016-07-04 106480353 ENSG00000260134 OTTHUMG00000176017 NG_044683 +HGNC:24181 C1QL2 complement C1q like 2 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "CTRP10|C1QTNF10" C1q and tumor necrosis factor related protein 10 complement component 1, q subcomponent-like 2 2004-05-18 2016-07-04 2016-07-04 165257 ENSG00000144119 OTTHUMG00000153271 uc002tlo.3 AF525315 NM_182528 CCDS42737 Q7Z5L3 18783346 MGI:3032521 RGD:1594583 C1QL2 614330 +HGNC:19359 C1QL3 complement C1q like 3 protein-coding gene gene with protein product Approved 10p13 10p13 "K100|C1ql|C1QTNF13|CTRP13" complement component 1, q subcomponent-like 3 2004-05-19 2016-07-04 2016-07-04 389941 ENSG00000165985 OTTHUMG00000017738 uc001ioj.1 XM_372305 CCDS31156 Q5VWW1 21378161 MGI:2387350 RGD:1591795 C1QL3 615227 +HGNC:31416 C1QL4 complement C1q like 4 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "C1QTNF11|CTRP11" complement component 1, q subcomponent like 4 2005-03-22 2016-07-04 2016-07-04 338761 ENSG00000186897 OTTHUMG00000169515 uc001rtz.2 NM_001008223 CCDS31793 Q86Z23 MGI:3579909 RGD:1565968 C1QL4 615229 +HGNC:14324 C1QTNF1 C1q and tumor necrosis factor related protein 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "CTRP1|ZSIG37|GIP|FLJ90694" G protein coupled receptor interacting protein 2001-10-02 2016-10-05 114897 ENSG00000173918 OTTHUMG00000177533 uc031rep.2 AF329840 NM_030968 "CCDS11761|CCDS11762" Q9BXJ1 12409230 MGI:1919254 RGD:1359204 C1QTNF1 610365 +HGNC:44351 C1QTNF1-AS1 C1QTNF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 2013-05-21 2016-09-26 100507410 ENSG00000265096 OTTHUMG00000132159 NR_040018 +HGNC:14325 C1QTNF2 C1q and tumor necrosis factor related protein 2 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 CTRP2 2001-10-02 2015-09-11 114898 ENSG00000145861 OTTHUMG00000130323 uc003lyd.4 AF329836 XM_011534425 CCDS4351 Q9BXJ5 MGI:1916433 RGD:1561041 C1QTNF2 +HGNC:14326 C1QTNF3 C1q and tumor necrosis factor related protein 3 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "CTRP3|Cors|Corcs|2310005P21Rik|Cors-26" cartonectin 2001-10-02 2016-10-05 114899 ENSG00000082196 OTTHUMG00000090735 uc003jin.4 AF329837 NM_030945 "CCDS3904|CCDS34141" Q9BXJ4 18421280 MGI:1932136 RGD:1305010 C1QTNF3 612045 +HGNC:49198 C1QTNF3-AMACR C1QTNF3-AMACR readthrough (NMD candidate) other readthrough Approved 5p13.2 05p13.2 2013-09-30 2013-09-30 100534612 ENSG00000273294 OTTHUMG00000186337 NR_037951 +HGNC:14346 C1QTNF4 C1q and tumor necrosis factor related protein 4 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "CTRP4|ZACRP4" complement-c1q tumor necrosis factor-related protein 4 2001-10-02 2016-10-05 114900 ENSG00000172247 OTTHUMG00000166895 uc001ngc.3 AF329838 NM_031909 CCDS7942 Q9BXJ3 16094384 MGI:1914695 RGD:1311006 C1QTNF4 614911 +HGNC:14344 C1QTNF5 C1q and tumor necrosis factor related protein 5 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "CTRP5|DKFZp586B0621|LORD" "complement-c1q tumor necrosis factor-related protein 5|myonectin" 2001-10-02 2016-06-20 114902 ENSG00000223953 OTTHUMG00000166198 uc058iiv.2 AF329841 NM_015645 CCDS8420 Q9BXJ0 12944416 MGI:2385958 RGD:1308802 C1QTNF5 608752 138575 +HGNC:14343 C1QTNF6 C1q and tumor necrosis factor related protein 6 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "CTRP6|ZACRP6" 2001-10-02 2016-10-05 114904 ENSG00000133466 OTTHUMG00000150538 uc003aqy.2 AF329842 NM_182486 CCDS13943 Q9BXI9 12975309 MGI:1919959 RGD:1307057 C1QTNF6 614910 +HGNC:14342 C1QTNF7 C1q and tumor necrosis factor related protein 7 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 CTRP7 2001-10-02 2016-10-05 114905 ENSG00000163145 OTTHUMG00000097095 uc062vgs.1 AF329839 NM_001135170 "CCDS3414|CCDS47025" Q9BXJ2 MGI:1925911 RGD:1306978 C1QTNF7 +HGNC:31374 C1QTNF8 C1q and tumor necrosis factor related protein 8 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "UNQ5829|CTRP8" 2004-03-17 2014-11-19 390664 ENSG00000184471 OTTHUMG00000167756 uc010uuw.2 AY358832 XM_372606 CCDS32358 P60827 12975309 C1QTNF8 614147 +HGNC:28732 C1QTNF9 C1q and tumor necrosis factor related protein 9 protein-coding gene gene with protein product Approved 13q12.12 13q12.12 "MGC48915|CTRP9|C1QTNF9A|AQL1" 2006-04-20 2015-08-24 338872 ENSG00000240654 OTTHUMG00000016576 uc058vxt.1 BC040438 NM_178540 CCDS9306 P0C862 "12975309|18787108" MGI:3045252 RGD:1560876 C1QTNF9 614285 +HGNC:39906 C1QTNF9-AS1 C1QTNF9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 C1QTNF9 antisense RNA 1 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100874232 ENSG00000240868 OTTHUMG00000016579 uc058vxu.1 +HGNC:34072 C1QTNF9B C1q and tumor necrosis factor related protein 9B protein-coding gene gene with protein product Approved 13q12.12 13q12.12 CTRP9B 2011-05-08 2015-09-08 387911 ENSG00000205863 OTTHUMG00000016570 uc058vxi.1 BC110413 NM_001007537 CCDS31947 B2RNN3 17544811 MGI:3045252 C1QTNF9B 614148 +HGNC:39839 C1QTNF9B-AS1 C1QTNF9B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 PCOTH prostate collagen triple helix C1QTNF9B antisense RNA 1 (non-protein coding) 2011-09-05 2012-08-15 2014-11-19 542767 ENSG00000205861 OTTHUMG00000016571 uc058vxk.1 NM_001135816 Q58A44 15930275 617122 +HGNC:1246 C1R complement C1r protein-coding gene gene with protein product Approved 12p13.31 12p13.31 complement component 1, r subcomponent "Complement system|Sushi domain containing" "492|1179" 2001-06-22 2016-08-10 2016-08-10 715 ENSG00000159403 OTTHUMG00000168149 uc031ysf.2 M14058 NM_001733 CCDS81658 P00736 "MGI:1355313|MGI:3779804" RGD:1309091 C1R 613785 360362 S01.192 objectId:2334 3.4.21.41 +HGNC:21265 C1RL complement C1r subcomponent like protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "C1r-LP|C1RL1" complement component 1, r subcomponent-like Sushi domain containing 1179 2003-09-03 2016-03-08 2016-03-08 51279 ENSG00000139178 OTTHUMG00000168144 uc001qsn.4 AF178985 NM_016546 "CCDS8573|CCDS73431|CCDS76517" Q9NZP8 12838346 MGI:2660692 RGD:1302936 C1RL 608974 S01.189 +HGNC:27461 C1RL-AS1 C1RL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 MATL2963 C1RL antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 283314 ENSG00000205885 OTTHUMG00000168164 uc001qsp.3 AL833364 NR_026947 +HGNC:1247 C1S complement C1s protein-coding gene gene with protein product Approved 12p13.31 12p13.31 complement component 1, s subcomponent "Complement system|Sushi domain containing" "492|1179" 2001-06-22 2016-08-10 2016-10-12 716 ENSG00000182326 OTTHUMG00000150305 uc001qsj.4 NM_001734 CCDS31735 P09871 "MGI:1355312|MGI:3644269" RGD:619983 "C1Sbase: Mutation registry for C1s deficiency|http://structure.bmc.lu.se/idbase/C1Sbase/index2.html|LRG_25|http://www.lrg-sequence.org/LRG/LRG_25" C1S 120580 221171 S01.193 objectId:2335 3.4.21.42 +HGNC:1248 C2 complement C2 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 complement component 2 "Complement system|Sushi domain containing" "492|1179" 2001-06-22 2016-08-10 2016-10-12 717 ENSG00000166278 OTTHUMG00000031190 uc003nyf.5 NM_001145903 "CCDS4728|CCDS54991|CCDS56416|CCDS75427|CCDS75428" P06681 MGI:88226 RGD:2231 "C2base: Mutation registry for C2 deficiency|http://structure.bmc.lu.se/idbase/C2base/index2.html|LRG_26|http://www.lrg-sequence.org/LRG/LRG_26" C2 613927 119106 S01.194 +HGNC:49464 C2-AS1 C2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 2013-12-06 2016-10-05 102060414 ENSG00000281756 OTTHUMG00000189556 BX100594 NR_104191 +HGNC:1266 C2CD2 C2 calcium dependent domain containing 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "TMEM24L|DKFZP586F0422|C21orf258" TMEM24-like C21orf25 chromosome 21 open reading frame 25 C2 domain containing 823 2000-05-23 2007-10-17 2016-06-08 2016-06-08 25966 ENSG00000157617 OTTHUMG00000086779 uc002yzv.4 AB047784 NM_015500 "CCDS13677|CCDS42933" Q9Y426 15289880 MGI:1891883 RGD:735112 C2CD2 +HGNC:29000 C2CD2L C2CD2 like protein-coding gene gene with protein product Approved 11q23.3 11q23.3 KIAA0285 TMEM24 transmembrane protein 24 2004-04-06 2008-04-22 2016-01-19 2016-01-19 9854 ENSG00000172375 OTTHUMG00000166167 uc001pvn.4 AK025223 NM_014807 CCDS8413 O14523 15289880 MGI:1919014 RGD:1310281 C2CD2L +HGNC:24564 C2CD3 C2 calcium dependent domain containing 3 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 DKFZP586P0123 C2 domain containing 823 2007-10-17 2016-06-08 2016-06-08 26005 ENSG00000168014 OTTHUMG00000168110 uc001ouu.4 BC035599 NM_015531 "CCDS31636|CCDS66167" Q4AC94 MGI:2142166 RGD:1307366 C2CD3 615944 434225 +HGNC:33627 C2CD4A C2 calcium dependent domain containing 4A protein-coding gene gene with protein product Approved 15q22.2 15q22.2 NLF1 nuclear localized factor 1 FAM148A family with sequence similarity 148, member A C2 domain containing 823 2007-10-18 2009-09-28 2016-06-08 2016-06-08 145741 ENSG00000198535 OTTHUMG00000171942 uc002ahf.4 AF504646 NM_207322 CCDS32258 Q8NCU7 MGI:3645763 RGD:1596010 C2CD4A 610343 +HGNC:33628 C2CD4B C2 calcium dependent domain containing 4B protein-coding gene gene with protein product Approved 15q22.2 15q22.2 NLF2 nuclear localized factor 2 FAM148B family with sequence similarity 148, member B C2 domain containing 823 2007-10-18 2009-09-28 2016-06-08 2016-06-08 388125 ENSG00000205502 OTTHUMG00000171959 uc002ahg.3 BM023530 NM_001007595 CCDS32259 A6NLJ0 MGI:1922947 RGD:1591932 C2CD4B 610344 +HGNC:29417 C2CD4C C2 calcium dependent domain containing 4C protein-coding gene gene with protein product Approved 19p13.3 19p13.3 NLF3 nuclear localized factor 3 "KIAA1957|FAM148C" "KIAA1957|family with sequence similarity 148, member C" C2 domain containing 823 2004-02-12 2009-09-28 2016-06-08 2016-06-08 126567 ENSG00000183186 OTTHUMG00000180534 uc002loo.5 AB075837 XM_065166 CCDS45890 Q8TF44 11853319 MGI:2685084 RGD:1561354 C2CD4C 610336 +HGNC:37210 C2CD4D C2 calcium dependent domain containing 4D protein-coding gene gene with protein product Approved 1q21.3 01q21.3 FAM148D family with sequence similarity 148, member D C2 domain containing 823 2009-09-28 2016-06-08 2016-06-08 100191040 ENSG00000225556 OTTHUMG00000167218 uc010pdq.2 BC171843 NM_001136003 CCDS44224 B7Z1M9 MGI:2685505 RGD:2324777 C2CD4D +HGNC:29062 C2CD5 C2 calcium dependent domain containing 5 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 CDP138 138 kDa C2 domain-containing phosphoprotein KIAA0528 KIAA0528 C2 domain containing 823 2006-01-17 2012-12-13 2016-06-08 2016-06-08 9847 ENSG00000111731 OTTHUMG00000169100 uc001rfq.5 AB011100 NM_014802 "CCDS31758|CCDS66337|CCDS66338|CCDS66339|CCDS66340" Q86YS7 "21907143|25096995" MGI:1921991 RGD:1304592 +HGNC:28436 C2orf15 chromosome 2 open reading frame 15 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 MGC29762 2004-01-09 2016-09-30 150590 ENSG00000273045 OTTHUMG00000130635 uc002szk.4 BC021264 NM_144706 CCDS2038 Q8WU43 C2orf15 +HGNC:25275 C2orf16 chromosome 2 open reading frame 16 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 DKFZp434G118 P-S-E-R-S-H-H-S repeats containing 2004-01-09 2016-09-30 84226 ENSG00000221843 OTTHUMG00000159099 uc002rkz.5 AL136898 NM_032266 CCDS42666 Q68DN1 MGI:3045298 RGD:7513610 C2orf16 +HGNC:25077 C2orf27A chromosome 2 open reading frame 27A other unknown Approved 2q21.2 02q21.2 C2orf27 chromosome 2 open reading frame 27 2004-05-10 2009-04-02 2009-04-02 2014-11-19 29798 ENSG00000197927 OTTHUMG00000131666 AF038169 NM_013310 Q580R0 "9110174|8619474" C2orf27A +HGNC:38413 C2orf27AP1 chromosome 2 open reading frame 27A pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 2010-05-11 2014-12-01 100420811 ENSG00000273693 OTTHUMG00000188061 NG_021911 PGOHUM00000305467 +HGNC:49813 C2orf27AP2 chromosome 2 open reading frame 27A pseudogene 2 pseudogene pseudogene Approved 9p21.1 09p21.1 2014-03-06 2014-12-01 100131855 ENSG00000239792 OTTHUMG00000019725 NG_021611 PGOHUM00000303764 +HGNC:50418 C2orf27AP3 chromosome 2 open reading frame 27A pseudogene 3 pseudogene pseudogene Approved 9p11.2 09p11.2 2014-04-25 2014-12-01 100420784 ENSG00000230804 OTTHUMG00000013281 NG_023900 PGOHUM00000304193 +HGNC:33824 C2orf27B chromosome 2 open reading frame 27B other unknown Approved 2q21.2 02q21.2 MGC50273 2009-04-02 2014-10-06 408029 ENSG00000186825 OTTHUMG00000154614 uc002ttg.2 BC043584 NM_214461 Q580R0 C2orf27B +HGNC:24642 C2orf40 chromosome 2 open reading frame 40 protein-coding gene gene with protein product Approved 2q12.2 02q12.2 "ECRG4|augurin" esophageal cancer related gene 4 protein 2006-07-31 2016-09-30 84417 ENSG00000119147 OTTHUMG00000130921 uc010fjf.4 BC021742 NM_032411 CCDS2072 Q9H1Z8 12800218 MGI:1926146 RGD:1305645 C2orf40 611752 +HGNC:26056 C2orf42 chromosome 2 open reading frame 42 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 FLJ20558 2006-07-26 2016-10-05 54980 ENSG00000115998 OTTHUMG00000129642 uc002sgh.4 AK000565 NM_017880 CCDS1899 Q9NWW7 12477932 MGI:2141787 RGD:1306746 C2orf42 +HGNC:26322 C2orf48 chromosome 2 open reading frame 48 other unknown Approved 2p25.1 02p25.1 FLJ25102 2006-09-01 2016-09-30 348738 ENSG00000163009 OTTHUMG00000119017 uc021vds.2 AK057831 NM_182626 Q96LS8 12477932 C2orf48 +HGNC:28772 C2orf49 chromosome 2 open reading frame 49 protein-coding gene gene with protein product Approved 2q12.2 02q12.2 "MGC5509|asw" ashwin 2006-09-08 2016-09-30 79074 ENSG00000135974 OTTHUMG00000130808 uc002tcs.3 BC001310 NM_024093 "CCDS2068|CCDS74550" Q9BVC5 16680723 MGI:2138299 RGD:1310553 C2orf49 +HGNC:26324 C2orf50 chromosome 2 open reading frame 50 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 FLJ25143 2006-10-26 2016-09-30 130813 ENSG00000150873 OTTHUMG00000119057 uc010yjj.2 AK057872 NM_182500 CCDS1678 Q96LR7 12477932 MGI:1920917 RGD:1582838 C2orf50 +HGNC:26216 C2orf54 chromosome 2 open reading frame 54 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 FLJ22671 2007-05-02 2016-09-30 79919 ENSG00000172478 OTTHUMG00000151906 uc002wae.5 "AK026324|AK056601" "NM_024861|NM_001085437" "CCDS42839|CCDS42840|CCDS63187" Q08AI8 MGI:1919124 RGD:1563692 C2orf54 +HGNC:28563 C2orf57 chromosome 2 open reading frame 57 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 MGC35154 2007-06-14 2016-09-30 165100 ENSG00000177673 OTTHUMG00000133226 uc002vrz.4 BC034405 NM_152614 CCDS2487 Q53QW1 12477932 MGI:1919113 RGD:1564629 C2orf57 +HGNC:26850 C2orf61 chromosome 2 open reading frame 61 protein-coding gene gene with protein product Approved 2p21 02p21 FLJ40172 2007-07-10 2016-09-30 285051 ENSG00000239605 OTTHUMG00000128851 uc002rvs.3 AK097491 NM_173649 "CCDS1831|CCDS54356" Q8N801 MGI:1922717 RGD:1591638 C2orf61 +HGNC:33809 C2orf66 chromosome 2 open reading frame 66 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 UNQ6411 2007-12-18 2012-12-03 2012-12-03 2016-09-30 401027 ENSG00000187944 OTTHUMG00000132742 uc002utv.4 NM_213608 CCDS2317 Q6UXQ4 MGI:5593225 RGD:1586666 C2orf66 +HGNC:34353 C2orf68 chromosome 2 open reading frame 68 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 2008-07-02 2016-09-30 388969 ENSG00000168887 OTTHUMG00000153088 uc002sqc.3 NM_001013649 CCDS42704 Q2NKX9 25023051 MGI:1915614 RGD:1587471 C2orf68 +HGNC:26799 C2orf69 chromosome 2 open reading frame 69 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 FLJ38973 hypothetical protein FLJ38973 2008-07-02 2016-09-30 205327 ENSG00000178074 OTTHUMG00000154480 uc010zhb.2 NM_153689 CCDS46482 Q8N8R5 12477932 MGI:1920717 RGD:1306941 C2orf69 +HGNC:51800 C2orf69P1 chromosome 2 open reading frame 69 pseudogene 1 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-06-09 2015-06-09 727964 ENSG00000261046 OTTHUMG00000176015 NG_008612 PGOHUM00000293842 +HGNC:51801 C2orf69P2 chromosome 2 open reading frame 69 pseudogene 2 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-06-09 2015-06-09 642614 ENSG00000260341 OTTHUMG00000176008 NG_008611 PGOHUM00000293840 +HGNC:51802 C2orf69P3 chromosome 2 open reading frame 69 pseudogene 3 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-06-09 2015-06-09 100131279 ENSG00000261299 OTTHUMG00000176002 NG_008610 PGOHUM00000293838 +HGNC:51803 C2orf69P4 chromosome 2 open reading frame 69 pseudogene 4 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-06-09 2015-06-09 100420859 ENSG00000260480 OTTHUMG00000176249 NG_026416 PGOHUM00000293836 +HGNC:51804 C2orf69P5 chromosome 2 open reading frame 69 pseudogene 5 pseudogene pseudogene Approved 16p11.2 16p11.2 2015-06-09 2015-06-09 107403078 NG_046796 PGOHUM00000293834 +HGNC:27938 C2orf70 chromosome 2 open reading frame 70 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 LOC339778 hypothetical protein LOC339778 2008-07-03 2016-09-30 339778 ENSG00000173557 OTTHUMG00000151994 uc010eyn.4 NM_001105519 "CCDS42661|CCDS82429" A6NJV1 MGI:1922684 RGD:1559683 C2orf70 +HGNC:34383 C2orf71 chromosome 2 open reading frame 71 protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "FLJ34931|RP54" 2008-07-07 2016-09-30 388939 ENSG00000179270 OTTHUMG00000152024 uc002rmt.3 NM_001029883 CCDS42669 A6NGG8 20398886 MGI:2385061 RGD:1304963 Eye Diseases - LOVD|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=C2orf71 C2orf71 613425 233016 +HGNC:27418 C2orf72 chromosome 2 open reading frame 72 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 LOC257407 2008-07-07 2016-09-30 257407 ENSG00000204128 OTTHUMG00000153996 uc002vrl.5 NM_001144994 CCDS46539 A6NCS6 "8619474|9110174" MGI:1920042 RGD:2318569 +HGNC:26861 C2orf73 chromosome 2 open reading frame 73 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 FLJ40298 2008-07-07 2016-09-30 129852 ENSG00000177994 OTTHUMG00000151826 uc002rxt.1 "BC031669|AK097617" NM_001100396 CCDS46285 Q8N5S3 14702039 MGI:1922337 RGD:1562229 C2orf73 +HGNC:34439 C2orf74 chromosome 2 open reading frame 74 protein-coding gene gene with protein product Approved 2p15 02p15 LOC339804 2008-07-08 2016-09-30 339804 ENSG00000237651 OTTHUMG00000187090 uc010ypm.1 NM_001143959 CCDS46298 A8MZ97 MGI:1914608 RGD:1597336 C2orf74 +HGNC:27017 C2orf76 chromosome 2 open reading frame 76 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "MGC104437|LOC130355|AIM29" 2008-07-10 2016-09-30 130355 ENSG00000186132 OTTHUMG00000153298 uc002tlu.3 NM_001017927 CCDS42739 Q3KRA6 12477932 MGI:1920353 RGD:1594584 C2orf76 +HGNC:34349 C2orf78 chromosome 2 open reading frame 78 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "FLJ43987|hCG1989538|COG5373" 2008-07-18 2016-10-05 388960 ENSG00000187833 OTTHUMG00000152819 uc002sjr.1 "AC092653|AC136006|AK125975" NM_001080474 CCDS46338 A6NCI8 RGD:1582830 C2orf78 +HGNC:34352 C2orf80 chromosome 2 open reading frame 80 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 "LOC389073|GONDA1" gonad development associated 1 2008-07-18 2016-09-30 389073 ENSG00000188674 OTTHUMG00000154751 uc002vcr.4 "AC016697|AW136505|BC035737" NM_001099334 CCDS42809 Q0P641 "22080834|24055526" MGI:2138198 C2orf80 615536 +HGNC:34350 C2orf81 chromosome 2 open reading frame 81 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "LOC388963|hCG40743" 2008-07-18 2016-10-05 388963 ENSG00000159239 OTTHUMG00000191871 uc010yrq.2 "AC005041|CH471053" NM_001145054 A6NN90 15815621 MGI:1919087 RGD:1566019 C2orf81 +HGNC:33763 C2orf82 chromosome 2 open reading frame 82 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "UNQ830|ASCL830" 2008-07-18 2016-09-30 389084 ENSG00000182600 OTTHUMG00000133273 uc061tsf.1 "AY358535|BC035093" NM_206895 CCDS2499 Q6UX34 "12975309|21624478" MGI:1920484 RGD:1311447 C2orf82 +HGNC:25344 C2orf83 chromosome 2 open reading frame 83 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 DKFZp547H025 2008-09-16 2016-09-30 56918 ENSG00000042304 OTTHUMG00000153550 uc002vph.4 NM_020161 "CCDS33388|CCDS54434" Q53S99 C2orf83 +HGNC:28191 C2orf88 chromosome 2 open reading frame 88 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 "MGC13057|smAKAP" small membrane AKAP 2009-04-08 2009-04-08 2016-09-30 84281 ENSG00000187699 OTTHUMG00000154361 uc002urq.4 BC005083 NM_032321 CCDS42792 Q9BSF0 23996002 MGI:1914330 RGD:1596493 C2orf88 615117 +HGNC:37251 C2orf90 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42966 C2orf91 chromosome 2 open reading frame 91 protein-coding gene gene with protein product Approved 2p21 02p21 2012-02-17 2016-09-30 400950 ENSG00000205086 OTTHUMG00000152307 uc002rsf.1 NM_001242815 CCDS56116 Q6ZV80 +HGNC:1318 C3 complement C3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "CPAMD1|ARMD9|C3a|C3b" "C3a anaphylatoxin|complement component C3a|complement component C3b|prepro-C3" complement component 3 "Complement system|Endogenous ligands|C3 and PZP like, alpha-2-macroglobulin domain containing" "492|542|1234" 2001-06-22 2016-08-10 2016-10-12 718 ENSG00000125730 OTTHUMG00000150335 uc002mfm.4 J04763 NM_000064 CCDS32883 P01024 MGI:88227 RGD:2232 "C3base: Mutation registry for C3 deficiency|http://structure.bmc.lu.se/idbase/C3base/index2.html|LRG_27|http://www.lrg-sequence.org/LRG/LRG_27" C3 120700 160064 I39.950 3.4.21.43 +HGNC:1319 C3AR1 complement C3a receptor 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "C3AR|AZ3B" complement component 3a receptor 1 "Complement component GPCRs|Complement system" "196|492" 1997-05-22 2016-08-10 2016-08-10 719 ENSG00000171860 OTTHUMG00000168569 uc001qtv.2 U28488 NM_004054 CCDS8588 Q16581 8605247 MGI:1097680 RGD:620537 C3AR1 605246 objectId:31 +HGNC:1320 C3CER1 chromosome 3 common eliminated region 1 other region Approved 3p22-p21.2 03p22-p21.2 CER1 1999-08-05 2006-08-03 23739 "9408748|10610706" +HGNC:25024 C3orf14 chromosome 3 open reading frame 14 protein-coding gene gene with protein product Approved 3p14.2 03p14.2 HT021 2004-07-12 2016-09-30 57415 ENSG00000114405 OTTHUMG00000158704 uc010hnq.4 AF236158 NM_020685 CCDS2896 Q9HBI5 21156036 MGI:1917937 RGD:1306063 C3orf14 +HGNC:24837 C3orf18 chromosome 3 open reading frame 18 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 G20 2005-01-10 2016-10-05 51161 ENSG00000088543 OTTHUMG00000156854 uc003dat.4 AF188706 NM_016210 "CCDS2829|CCDS54589" Q9UK00 12477932 MGI:2445137 RGD:1307461 C3orf18 +HGNC:25320 C3orf20 chromosome 3 open reading frame 20 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 DKFZP434N1817 2005-01-19 2016-09-30 84077 ENSG00000131379 OTTHUMG00000155545 uc003byy.4 AL136781 NM_032137 "CCDS33706|CCDS54555" Q8ND61 11230166 MGI:2685917 RGD:1560289 C3orf20 +HGNC:28534 C3orf22 chromosome 3 open reading frame 22 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 MGC34728 2005-04-08 2016-09-30 152065 ENSG00000180697 OTTHUMG00000162731 uc003ejb.4 NM_152533 CCDS3040 Q8N5N4 12477932 MGI:2679261 RGD:1587811 C3orf22 +HGNC:26553 C3orf30 chromosome 3 open reading frame 30 protein-coding gene gene with protein product Approved 3q13.32 03q13.32 FLJ32859 2005-12-22 2016-09-30 152405 ENSG00000163424 OTTHUMG00000159349 uc003ecb.1 AK057421 NM_152539 CCDS2984 Q96M34 MGI:1921913 RGD:1306995 C3orf30 +HGNC:26434 C3orf33 chromosome 3 open reading frame 33 protein-coding gene gene with protein product Approved 3q25.31 03q25.31 "FLJ31139|AC3-33" 2006-01-02 2016-09-30 285315 ENSG00000174928 OTTHUMG00000158496 uc062pfq.1 AF115515 NM_173657 "CCDS54659|CCDS77843" Q6P1S2 "20680465|26137149" MGI:3607716 RGD:1565059 C3orf33 +HGNC:24082 C3orf35 chromosome 3 open reading frame 35 other unknown Approved 3p22.2 03p22.2 APRG1 "AP20 region protein|APRG1 tumor suppressor candidate" 2006-01-02 2016-10-05 339883 ENSG00000198590 OTTHUMG00000155923 uc062ida.1 AJ493599 NM_178338 Q8IVJ8 12543795 C3orf35 611429 +HGNC:26170 C3orf36 chromosome 3 open reading frame 36 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 FLJ22173 2006-01-02 2016-09-30 80111 ENSG00000221972 OTTHUMG00000187161 uc003epz.2 AK025826 NM_025041 CCDS3083 Q3SXR2 12477932 C3orf36 +HGNC:28384 C3orf38 chromosome 3 open reading frame 38 protein-coding gene gene with protein product Approved 3p11.1 03p11.1 MGC26717 2006-01-05 2016-09-30 285237 ENSG00000179021 OTTHUMG00000155752 uc003dqw.4 AL832398 NM_173824 CCDS2921 Q5JPI3 12477932 MGI:1914859 RGD:1359320 C3orf38 +HGNC:25190 C3orf49 chromosome 3 open reading frame 49 other unknown Approved 3p14.1 03p14.1 2006-01-16 2016-09-30 132200 ENSG00000163632 OTTHUMG00000158761 uc003dls.5 BC015210 NR_026866 Q96BT1 12477932 RGD:7634115 C3orf49 +HGNC:26255 C3orf52 chromosome 3 open reading frame 52 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "FLJ23186|TTMP" TPA induced trans-membrane protein 2006-01-30 2016-09-30 79669 ENSG00000114529 OTTHUMG00000159230 uc003dyq.5 AY830714 NM_024616 "CCDS46887|CCDS54620" Q5BVD1 15737651 MGI:2384848 RGD:1591333 C3orf52 611956 +HGNC:26589 C3orf53 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:32481 C3orf56 chromosome 3 open reading frame 56 other unknown Approved 3q21.3 03q21.3 FLJ40141 2006-02-01 2016-09-30 285311 ENSG00000214324 OTTHUMG00000159593 uc062nlo.1 AK097460 NM_001007534 Q8N813 14702039 C3orf56 +HGNC:28490 C3orf58 chromosome 3 open reading frame 58 protein-coding gene gene with protein product Approved 3q24 03q24 "MGC33365|DIA1|HASF" "deleted in autism 1|hypoxia and Akt induced stem cell factor" 2006-02-07 2016-09-30 205428 ENSG00000181744 OTTHUMG00000159380 uc003evo.4 AK095161 NM_173552 "CCDS3130|CCDS46929" Q8NDZ4 "21283809|23784961|24269490" MGI:1916111 RGD:1309079 C3orf58 612200 +HGNC:24771 C3orf62 chromosome 3 open reading frame 62 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ43654 2006-02-09 2016-09-30 375341 ENSG00000188315 OTTHUMG00000156819 uc003cwn.3 AK125642 NM_198562 CCDS2792 Q6ZUJ4 12477932 MGI:2148248 RGD:1589651 C3orf62 +HGNC:24763 C3orf67 chromosome 3 open reading frame 67 protein-coding gene gene with protein product Approved 3p14.2 03p14.2 "FLJ42117|FLJ42930" 2007-12-14 2016-09-30 200844 ENSG00000163689 OTTHUMG00000159151 uc003dkt.2 AK124920 NM_198463 CCDS33776 Q6ZVT6 MGI:1926154 RGD:1359720 C3orf67 +HGNC:41063 C3orf67-AS1 C3orf67 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.2 03p14.2 2014-04-07 2014-11-18 101929238 ENSG00000242428 OTTHUMG00000159203 AK090895 NR_110820 +HGNC:33731 C3orf70 chromosome 3 open reading frame 70 protein-coding gene gene with protein product Approved 3q27.2 03q27.2 2008-06-13 2016-09-30 285382 ENSG00000187068 OTTHUMG00000156696 uc003fpd.3 NM_001025266 CCDS33900 A6NLC5 MGI:1919440 RGD:1562339 C3orf70 +HGNC:37259 C3orf79 chromosome 3 open reading frame 79 other unknown Approved 3q25.2 03q25.2 2009-09-30 2016-09-30 152118 ENSG00000237787 OTTHUMG00000159629 uc003ezt.4 AF086445 NM_001101337 P0CE67 C3orf79 +HGNC:40048 C3orf80 chromosome 3 open reading frame 80 protein-coding gene gene with protein product Approved 3q25.33 03q25.33 2011-08-15 2016-09-30 401097 ENSG00000180044 uc021xgp.2 NM_001168214 CCDS54667 F5H4A9 MGI:1915975 RGD:2318708 C3orf80 +HGNC:44666 C3orf84 chromosome 3 open reading frame 84 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 2013-06-21 2016-09-30 646498 ENSG00000236980 OTTHUMG00000156816 XM_011534015 CCDS58831 H3BNL1 MGI:3618861 RGD:1596842 +HGNC:34414 C3P1 complement component 3 precursor pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 CPLP 2009-04-08 2014-11-19 388503 ENSG00000167798 OTTHUMG00000158555 AK131489 NR_027300 Q6ZMU1 C3P1 +HGNC:1323 C4A complement C4A (Rodgers blood group) protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "CPAMD2|C4S|CO4|C4|C4A3|C4A2|C4A4|C4A6|C4B|RG" "complement component 4A|complement component 4A (Rodgers blood group)" "Blood group antigens|Complement system|C3 and PZP like, alpha-2-macroglobulin domain containing" "454|492|1234" 2001-06-22 2016-08-10 2016-10-12 720 ENSG00000244731 OTTHUMG00000031186 uc011iuc.3 "L26261|M14823|X77491|AY224378" NM_007293 "CCDS47404|CCDS59005" P0C0L4 "MGI:88228|MGI:98320" LRG_137|http://www.lrg-sequence.org/LRG/LRG_137 C4A 120810 160067 I39.951 +HGNC:39753 C4A-AS1 C4A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 C4A antisense RNA 1 (non-protein coding) 2011-04-21 2012-08-15 2012-10-12 106478955 ENSG00000233627 OTTHUMG00000137496 uc063xxy.1 +HGNC:1324 C4B complement C4B (Chido blood group) protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "CPAMD3|C4F|CO4|C4B1|C4B3|CH" "complement component 4B|complement component 4B (Chido blood group)" "Blood group antigens|Complement system|C3 and PZP like, alpha-2-macroglobulin domain containing" "454|492|1234" 2001-06-22 2016-08-10 2016-10-12 721 ENSG00000224389 OTTHUMG00000031187 uc011dpd.3 AF019413 NM_001002029 CCDS47405 P0C0L5 "MGI:88228|MGI:98320" RGD:1591983 LRG_138|http://www.lrg-sequence.org/LRG/LRG_138 C4B 120820 160082 +HGNC:39752 C4B-AS1 C4B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 C4B antisense RNA 1 (non-protein coding) 2011-04-21 2012-08-15 2012-10-12 106480730 ENSG00000229776 OTTHUMG00000137467 uc032yon.2 +HGNC:1325 C4BPA complement component 4 binding protein alpha protein-coding gene gene with protein product Approved 1q32.2 01q32.2 C4BP complement component 4-binding protein, alpha Sushi domain containing 1179 1986-01-01 2016-02-29 2016-10-05 722 ENSG00000123838 OTTHUMG00000036173 uc001hfo.3 M31452 XM_005273252 CCDS1477 P04003 RGD:2235 C4BPA 120830 +HGNC:1326 C4BPAP1 complement component 4 binding protein, alpha pseudogene 1 pseudogene pseudogene Approved 1q32.2 01q32.2 C4BPAL1 complement component 4-binding protein, alpha-like 1 1991-09-12 2010-10-11 2010-10-11 2016-10-05 727859 ENSG00000224462 OTTHUMG00000036251 NG_006475 2352933 PGOHUM00000296745 +HGNC:1327 C4BPAP2 complement component 4 binding protein, alpha pseudogene 2 pseudogene pseudogene Approved 1q32.2 01q32.2 C4BPAL2 "complement component 4-binding protein, alpha-like 2|complement component 4 binding protein, alpha-like 2" 1995-08-29 2010-10-11 2010-10-11 2016-10-05 724 ENSG00000232621 OTTHUMG00000036252 X81360 NG_002761 7806286 PGOHUM00000245186 +HGNC:51640 C4BPAP3 complement component 4 binding protein, alpha pseudogene 3 pseudogene pseudogene Approved 1q32.2 01q32.2 2015-04-08 2015-04-08 100421610 NG_027197 PGOHUM00000296746 +HGNC:1328 C4BPB complement component 4 binding protein beta protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "complement component 4 binding protein, beta chain|C4b binding protein, beta chain" C4BP complement component 4-binding protein, beta Sushi domain containing 1179 1990-06-13 2016-02-29 2016-10-05 725 ENSG00000123843 OTTHUMG00000036035 uc057oyu.1 L11245 NM_000716 "CCDS1476|CCDS31005" P20851 "2300577|8325877" RGD:2236 C4BPB 120831 +HGNC:42398 C4B_2 complement component 4B (Chido blood group), copy 2 protein-coding gene gene with protein product Approved 6p21.3 alternate reference locus 06p21.3 alternate reference locus 2013-01-18 2014-04-11 100293534 ENSG00000233312 OTTHUMG00000188967 uc011jpd.3 GL000256 NM_001242823 P0C0L5 19505723 +HGNC:19225 C4orf3 chromosome 4 open reading frame 3 protein-coding gene gene with protein product Approved 4q26 04q26 HCV F-transactivated protein 1 2008-12-09 2016-09-30 401152 ENSG00000164096 OTTHUMG00000161333 uc021xrf.1 NM_001001701 "CCDS43266|CCDS54798" Q8WVX3 MGI:1914954 RGD:1594660 C4orf3 +HGNC:25274 C4orf17 chromosome 4 open reading frame 17 protein-coding gene gene with protein product Approved 4q23 04q23 DKFZP434G072 2004-11-26 2016-09-30 84103 ENSG00000138813 OTTHUMG00000131027 uc003huw.3 AL136838 NM_032149 CCDS3649 Q53FE4 11230166 MGI:1914991 RGD:1309170 C4orf17 +HGNC:25618 C4orf19 chromosome 4 open reading frame 19 protein-coding gene gene with protein product Approved 4p14 04p14 FLJ11017 2006-03-24 2016-09-30 55286 ENSG00000154274 OTTHUMG00000128580 uc003gsw.5 BC037906 NM_018302 CCDS3442 Q8IY42 12477932 MGI:1923511 RGD:1561612 C4orf19 +HGNC:28554 C4orf22 chromosome 4 open reading frame 22 protein-coding gene gene with protein product Approved 4q21.21 04q21.21 2006-05-22 2016-09-30 255119 ENSG00000197826 OTTHUMG00000130289 uc003hmf.3 BC034296 NM_152770 "CCDS3587|CCDS56336" Q6V702 12477932 MGI:1916571 RGD:1597725 C4orf22 +HGNC:26300 C4orf26 chromosome 4 open reading frame 26 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 FLJ23657 2006-05-22 2016-09-30 152816 ENSG00000174792 OTTHUMG00000130104 uc003hip.3 AK074237 NM_178497 "CCDS3569|CCDS56334|CCDS75142" Q17RF5 "22901946|27558265" MGI:2685891 RGD:6489816 C4orf26 614829 310402 +HGNC:26813 C4orf32 chromosome 4 open reading frame 32 protein-coding gene gene with protein product Approved 4q25 04q25 FLJ39370 2006-08-15 2016-09-30 132720 ENSG00000174749 OTTHUMG00000132851 uc003iah.3 AK096689 NM_152400 CCDS3695 Q8N8J7 12477932 MGI:1917867 RGD:1593351 C4orf32 +HGNC:27025 C4orf33 chromosome 4 open reading frame 33 protein-coding gene gene with protein product Approved 4q28.2 04q28.2 FLJ33703 2006-08-18 2016-09-30 132321 ENSG00000151470 OTTHUMG00000133347 uc003igu.5 AK091022 NM_173487 CCDS3741 Q8N1A6 12477932 MGI:1289213 RGD:1359508 C4orf33 +HGNC:28386 C4orf36 chromosome 4 open reading frame 36 protein-coding gene gene with protein product Approved 4q21.3 04q21.3 MGC26744 2006-09-11 2016-09-30 132989 ENSG00000163633 OTTHUMG00000130597 uc062xzo.1 BC016746 NM_144645 CCDS3615 Q96KX1 12477932 MGI:1921468 RGD:1564576 C4orf36 +HGNC:26342 C4orf45 chromosome 4 open reading frame 45 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 FLJ25371 2008-07-14 2016-09-30 152940 ENSG00000164123 OTTHUMG00000161988 uc003iqf.2 NM_152543 CCDS47156 Q96LM5 MGI:4936993 RGD:1566255 C4orf45 +HGNC:27320 C4orf46 chromosome 4 open reading frame 46 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "LOC201725|RCDG1" renal cancer differentiation gene 1 2008-07-14 2016-09-30 201725 ENSG00000205208 OTTHUMG00000161919 uc003iqa.4 NM_001008393 CCDS34088 Q504U0 MGI:1923189 RGD:1560010 C4orf46 616210 +HGNC:34346 C4orf47 chromosome 4 open reading frame 47 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 LOC441054 2008-07-18 2016-09-30 441054 ENSG00000205129 OTTHUMG00000160458 uc003ixt.3 "AY947525|BC127739|BC141967" NM_001114357 CCDS47169 A7E2U8 25074808 MGI:1916729 RGD:1564308 C4orf47 +HGNC:34437 C4orf48 chromosome 4 open reading frame 48 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 2008-09-10 2016-09-30 401115 ENSG00000243449 OTTHUMG00000154503 uc003gep.4 NM_001141936 "CCDS47000|CCDS54707" Q5BLP8 21287218 MGI:2686519 RGD:1560394 C4orf48 614690 +HGNC:33766 C4orf50 chromosome 4 open reading frame 50 protein-coding gene gene with protein product Approved 4p16.2-p16.1 04p16.2-p16.1 FLJ46481 2009-04-14 2016-10-11 389197 ENSG00000181215 OTTHUMG00000149971 uc062uxw.1 BC140710 NM_207405 Q6ZRC1 MGI:2685889 RGD:7596857 C4orf50 +HGNC:37264 C4orf51 chromosome 4 open reading frame 51 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 2009-09-09 2016-09-30 646603 ENSG00000237136 OTTHUMG00000161367 uc003ikk.4 NM_001080531 CCDS47140 C9J302 MGI:1914937 RGD:1561806 C4orf51 +HGNC:1331 C5 complement C5 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "CPAMD4|C5a|C5b" "prepro-C5|C5a anaphylatoxin" complement component 5 "Complement system|Endogenous ligands|C3 and PZP like, alpha-2-macroglobulin domain containing" "492|542|1234" 2001-06-22 2016-08-10 2016-10-12 727 ENSG00000106804 OTTHUMG00000020579 uc004bkv.4 M57729 NM_001735 CCDS6826 P01031 MGI:96031 RGD:2237 "C5base: Mutation registry for C5 deficiency|http://structure.bmc.lu.se/idbase/C5base/index2.html|LRG_28|http://www.lrg-sequence.org/LRG/LRG_28" C5 120900 160093 I39.952 +HGNC:1338 C5AR1 complement C5a receptor 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "C5A|C5AR|CD88" C5R1 "complement component 5 receptor 1 (C5a ligand)|complement component 5a receptor 1" "Complement component GPCRs|CD molecules|Complement system" "196|471|492" 1991-12-04 2006-02-09 2016-08-10 2016-08-10 728 ENSG00000197405 OTTHUMG00000183504 uc002pgj.2 NM_001736 CCDS33063 P21730 1612600 MGI:88232 RGD:70553 C5AR1 113995 objectId:32 CD88 +HGNC:4527 C5AR2 complement component 5a receptor 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 C5L2 GPR77 G protein-coupled receptor 77 Complement component GPCRs 196 2000-01-20 2013-01-28 2013-01-28 2016-10-05 27202 ENSG00000134830 OTTHUMG00000183505 uc010ela.2 AB038237 NM_018485 CCDS12699 Q9P296 11165367 MGI:2442013 RGD:1303027 609949 objectId:33 +HGNC:17924 C5orf9 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-05-12 +HGNC:20656 C5orf15 chromosome 5 open reading frame 15 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "KCT2|HTGN29" keratinocytes associated transmembrane protein 2 2004-04-27 2016-09-30 56951 ENSG00000113583 OTTHUMG00000129125 uc003kyo.4 AF226055 NM_020199 CCDS4167 Q8NC54 MGI:2654705 RGD:1310352 C5orf15 +HGNC:26630 C5orf17 chromosome 5 open reading frame 17 other unknown Approved 5p14.2 05p14.2 FLJ34836 2004-04-19 2016-09-30 439936 ENSG00000248874 OTTHUMG00000161911 uc003jgq.1 AK092155 NM_173668 Q8NAS9 C5orf17 +HGNC:25639 C5orf22 chromosome 5 open reading frame 22 protein-coding gene gene with protein product Approved 5p13.3 05p13.3 FLJ11193 2006-03-24 2016-09-30 55322 ENSG00000082213 OTTHUMG00000131067 uc003jhj.4 AK002055 NM_018356 CCDS3895 Q49AR2 MGI:1925127 RGD:1306502 C5orf22 +HGNC:26746 C5orf24 chromosome 5 open reading frame 24 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 FLJ37562 2006-04-03 2016-09-30 134553 ENSG00000181904 OTTHUMG00000129121 uc003kzz.4 BC053677 NM_152409 "CCDS4179|CCDS75307" Q7Z6I8 12477932 MGI:1925771 RGD:1566359 C5orf24 +HGNC:25052 C5orf30 chromosome 5 open reading frame 30 protein-coding gene gene with protein product Approved 5q21.1 05q21.1 FLJ25291 2006-08-15 2016-09-30 90355 ENSG00000181751 OTTHUMG00000128738 uc003kog.2 NM_033211 CCDS4095 Q96GV9 22085962 MGI:1277184 RGD:1562136 C5orf30 616608 +HGNC:24738 C5orf34 chromosome 5 open reading frame 34 protein-coding gene gene with protein product Approved 5p12 05p12 FLJ32363 2006-10-26 2016-09-30 375444 ENSG00000172244 OTTHUMG00000131151 uc003jnz.3 AK056925 NM_198566 CCDS3946 Q96MH7 12477932 MGI:1914642 RGD:1306227 C5orf34 +HGNC:24226 C5orf38 chromosome 5 open reading frame 38 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "CEI|IRX2NB" "coordinated expression to IRX2|IRX2 neighbor" 2007-02-19 2016-09-30 153571 ENSG00000186493 OTTHUMG00000161741 uc003jdc.3 AY249324 NM_178569 "CCDS34131|CCDS77993|CCDS77995" Q86SI9 "16515847|16750006" C5orf38 610522 +HGNC:25801 C5orf42 chromosome 5 open reading frame 42 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "FLJ13231|JBTS17|Hug" 2007-12-13 2016-09-30 65250 ENSG00000197603 OTTHUMG00000160492 uc011cpa.1 NM_023073 CCDS34146 Q9H799 "22264561|25877302" MGI:1920942 RGD:1310081 C5orf42 614571 299619 +HGNC:33768 C5orf46 chromosome 5 open reading frame 46 protein-coding gene gene with protein product Approved 5q32 05q32 "MGC23985|SSSP1" skin and saliva secreted protein 1 2008-07-14 2016-10-05 389336 ENSG00000178776 OTTHUMG00000163420 uc003lou.4 NM_206966 CCDS34267 Q6UWT4 MGI:2684940 RGD:1563060 C5orf46 +HGNC:27026 C5orf47 chromosome 5 open reading frame 47 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 LOC133491 2008-07-14 2016-09-30 133491 ENSG00000185056 OTTHUMG00000163349 uc003mcw.4 NM_001144954 CCDS47343 Q569G3 12477932 MGI:1914842 RGD:1311343 C5orf47 +HGNC:27028 C5orf49 chromosome 5 open reading frame 49 protein-coding gene gene with protein product Approved 5p15.31 05p15.31 LOC134121 2008-07-14 2016-09-30 134121 ENSG00000215217 OTTHUMG00000161897 uc003jea.7 NM_001089584 CCDS43300 A4QMS7 12477932 MGI:1916565 RGD:1308544 C5orf49 +HGNC:27750 C5orf51 chromosome 5 open reading frame 51 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 LOC285636 2008-07-18 2016-09-30 285636 ENSG00000205765 OTTHUMG00000162084 uc003jmo.4 "AL833916|AK094002" NM_175921 CCDS34151 A6NDU8 14702039 MGI:2146232 RGD:1305938 C5orf51 +HGNC:35121 C5orf52 chromosome 5 open reading frame 52 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 2008-09-11 2016-09-30 100190949 ENSG00000187658 OTTHUMG00000154518 uc011ddt.3 BG721329 NM_001145132 CCDS47329 A6NGY3 MGI:1914680 RGD:1308775 C5orf52 +HGNC:33838 C5orf56 chromosome 5 open reading frame 56 other unknown Approved 5q31.1 05q31.1 2009-04-20 2016-09-30 441108 ENSG00000197536 OTTHUMG00000059493 uc003kwy.4 BC130299 NM_001013717 Q8N8D9 C5orf56 +HGNC:37272 C5orf58 chromosome 5 open reading frame 58 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 2009-09-30 2016-09-30 133874 ENSG00000234511 OTTHUMG00000163122 uc003mal.3 BC030767 NM_001102609 C9J3I9 RGD:11411272 C5orf58 +HGNC:27753 C5orf60 chromosome 5 open reading frame 60 other unknown Approved 5q35.3 05q35.3 2009-10-02 2016-09-30 285679 ENSG00000204661 OTTHUMG00000163221 uc003mki.4 BC043435 NM_001142306 A6NFR6 12477932 RGD:1591058 C5orf60 +HGNC:40051 C5orf63 chromosome 5 open reading frame 63 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 "YDR286C|FLJ44606" 2011-05-05 2016-09-30 401207 ENSG00000164241 OTTHUMG00000163037 uc021ydc.1 AK126569 NM_001164478 "CCDS54895|CCDS54896" A6NC05 MGI:1924672 RGD:2299854 C5orf63 +HGNC:26744 C5orf64 chromosome 5 open reading frame 64 other unknown Approved 5q12.1 05q12.1 FLJ37543 2011-05-05 2011-05-05 2016-09-30 285668 ENSG00000178722 OTTHUMG00000162412 uc063dxc.1 NM_173667 Q2M2E5 RGD:9403084 C5orf64 +HGNC:48332 C5orf66 chromosome 5 open reading frame 66 other unknown Approved 5q31.1 05q31.1 2013-11-06 2016-09-30 100996485 ENSG00000224186 OTTHUMG00000163075 NM_001277348 Q9H5L9 +HGNC:49679 C5orf66-AS1 C5orf66 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q31.1 05q31.1 "CTC-276P9.1|Epist" esophagus epithelial intergenic specific transcript 2014-02-04 2015-07-31 101927953 ENSG00000249082 OTTHUMG00000163077 NR_105049 26158411 +HGNC:27964 C5orf66-AS2 C5orf66 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 5q31.1 05q31.1 2014-02-04 2014-02-04 340073 ENSG00000249647 OTTHUMG00000163309 NR_037895 12477932 +HGNC:51252 C5orf67 chromosome 5 open reading frame 67 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 2015-03-18 2016-09-30 101928448 ENSG00000225940 OTTHUMG00000059482 NM_001287053 CCDS75247 F2Z3F1 +HGNC:1339 C6 complement C6 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 complement component 6 "Complement system|Sushi domain containing" "492|1179" 2001-06-22 2016-08-10 2016-10-12 729 ENSG00000039537 OTTHUMG00000094781 uc003jml.3 J05024 XM_011514114 CCDS3936 P13671 MGI:88233 RGD:2238 "C6base: Mutation registry for C6 deficiency|http://structure.bmc.lu.se/idbase/C6base/index2.html|LRG_29|http://www.lrg-sequence.org/LRG/LRG_29" C6 217050 160107 +HGNC:1340 C6orf1 chromosome 6 open reading frame 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "LBH|MGC57858" 1998-12-01 2016-10-05 221491 ENSG00000186577 OTTHUMG00000159754 uc003ojg.5 AY062936 NM_178508 "CCDS4790|CCDS75433" Q86T20 10036196 RGD:1564450 C6orf1 611419 +HGNC:13922 C6orf10 chromosome 6 open reading frame 10 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 TSBP testis specific basic protein 2001-04-06 2016-09-30 10665 ENSG00000204296 OTTHUMG00000031107 uc021yvt.3 U60665 NM_006781 "CCDS34422|CCDS69082|CCDS75430" Q5SRN2 10803852 MGI:3039565 RGD:1597063 C6orf10 +HGNC:13927 C6orf15 chromosome 6 open reading frame 15 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 STG 2002-11-18 2016-10-05 29113 ENSG00000204542 OTTHUMG00000031111 uc003nsk.2 AB031481 NM_014070 CCDS4693 Q6UXA7 15217361 MGI:1916792 RGD:1562885 C6orf15 611401 +HGNC:13937 C6orf25 chromosome 6 open reading frame 25 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G6b|NG31" 2002-04-05 2016-10-05 80739 ENSG00000204420 OTTHUMG00000031130 uc003nwk.4 NM_138272 "CCDS4715|CCDS4716|CCDS4717|CCDS34405|CCDS34406|CCDS34407" O95866 "10384126|11544253" MGI:2146995 RGD:1303269 C6orf25 606520 +HGNC:17979 C6orf36 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-07-09 +HGNC:18773 C6orf42 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:18774 C6orf43 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:19076 C6orf47 chromosome 6 open reading frame 47 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "D6S53E|G4" 2002-08-13 2016-10-05 57827 ENSG00000204439 OTTHUMG00000031172 uc011ipu.1 AF129756 NM_021184 CCDS34399 O95873 2477242 MGI:90673 RGD:1303038 C6orf47 +HGNC:39767 C6orf47-AS1 C6orf47 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 C6orf47 antisense RNA 1 (non-protein coding) 2011-04-21 2012-08-15 2012-10-12 106480731 ENSG00000227198 OTTHUMG00000057503 uc063ywo.1 +HGNC:19078 C6orf48 chromosome 6 open reading frame 48 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "D6S57|G8" 2002-08-13 2016-09-30 50854 ENSG00000204387 OTTHUMG00000031175 uc003rjy.4 AJ249732 NM_001040437 CCDS34416 Q9UBA6 8096093 C6orf48 605447 +HGNC:20481 C6orf50 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:20881 C6orf52 chromosome 6 open reading frame 52 protein-coding gene gene with protein product Approved 6p24.2 06p24.2 2003-04-16 2007-06-07 2007-06-07 2016-09-30 347744 ENSG00000137434 OTTHUMG00000014240 uc011dij.3 BC016820 NM_001145020 CCDS47371 Q5T4I8 12477932 RGD:1562963 C6orf52 +HGNC:20960 C6orf58 chromosome 6 open reading frame 58 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 LEG1 liver enriched gene 1 homolog 2003-04-24 2016-09-30 352999 ENSG00000184530 OTTHUMG00000015530 uc003qbh.5 BC062712 NM_001010905 CCDS34533 Q6P5S2 26901320 MGI:1914969 RGD:1311933 C6orf58 +HGNC:20998 C6orf62 chromosome 6 open reading frame 62 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "FLJ12619|DKFZP564G182|XTP12" HBV X-transactivated protein 12 2003-05-01 2016-10-05 81688 ENSG00000112308 OTTHUMG00000014361 uc003nel.5 AL136632 NM_030939 CCDS4559 Q9GZU0 11230166 MGI:2441726 RGD:6491729 C6orf62 +HGNC:21114 C6orf89 chromosome 6 open reading frame 89 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "FLJ25357|BRAP" "bombesin receptor activated protein|amfion" 2003-05-20 2016-10-05 221477 ENSG00000198663 OTTHUMG00000014613 uc003omw.4 AK058086 NM_152734 "CCDS4827|CCDS69100|CCDS75444" Q6UWU4 "21857995|23460338|26460487" MGI:2136782 RGD:735065 C6orf89 616642 +HGNC:21179 C6orf99 chromosome 6 open reading frame 99 other unknown Approved 6q25.3 06q25.3 yR211F11.1 2003-11-26 2016-09-30 100130967 ENSG00000203711 OTTHUMG00000015921 uc063sod.1 NM_001195032 Q4VX62 C6orf99 +HGNC:21215 C6orf106 chromosome 6 open reading frame 106 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "FLJ22195|dJ391O22.4" 2003-11-25 2016-09-30 64771 ENSG00000196821 OTTHUMG00000014553 uc003ojr.4 AF052106 NM_022758 "CCDS4795|CCDS4796" Q9H6K1 MGI:106281 RGD:1559829 C6orf106 612217 +HGNC:21233 C6orf118 chromosome 6 open reading frame 118 protein-coding gene gene with protein product Approved 6q27 06q27 "MGC23884|bA85G2.1" 2003-05-29 2016-09-30 168090 ENSG00000112539 OTTHUMG00000015984 uc003qum.5 NM_144980 CCDS5288 Q5T5N4 MGI:1914181 RGD:1598061 C6orf118 +HGNC:21247 C6orf120 chromosome 6 open reading frame 120 protein-coding gene gene with protein product Approved 6q27 06q27 bA160E12.4 2003-12-01 2016-09-30 387263 ENSG00000185127 OTTHUMG00000016057 uc003qxb.4 AF055030 NM_001029863 CCDS34575 Q7Z4R8 "8619474|9110174|22340178" MGI:1915162 RGD:1642424 C6orf120 616987 +HGNC:21288 C6orf132 chromosome 6 open reading frame 132 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 bA7K24.2 2003-11-26 2016-09-30 647024 ENSG00000188112 OTTHUMG00000014695 uc003orw.3 NM_001164446 CCDS47428 Q5T0Z8 MGI:2146908 RGD:1561662 C6orf132 +HGNC:21301 C6orf136 chromosome 6 open reading frame 136 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 Em:AB023049.8 2003-06-02 2016-10-05 221545 ENSG00000204564 OTTHUMG00000031221 uc003nqw.5 BC016167 NM_145029 "CCDS43443|CCDS4684|CCDS54979" Q5SQH8 MGI:1916912 RGD:1302996 C6orf136 +HGNC:21351 C6orf141 chromosome 6 open reading frame 141 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 MGC46457 2003-06-09 2016-09-30 135398 ENSG00000197261 OTTHUMG00000014820 uc011dwo.3 AK054918 NM_153344 CCDS55018 Q5SZD1 MGI:1918833 RGD:1588829 C6orf141 +HGNC:21403 C6orf163 chromosome 6 open reading frame 163 protein-coding gene gene with protein product Approved 6q15 06q15 2003-06-12 2016-09-30 206412 ENSG00000203872 OTTHUMG00000015169 uc021zcl.2 AK092941 NM_001010868 CCDS55042 Q5TEZ5 MGI:2684982 RGD:1563056 C6orf163 +HGNC:21562 C6orf183 chromosome 6 open reading frame 183 other unknown Approved 6q21 06q21 bA487F23.3 2004-01-16 2012-02-07 2012-02-07 2016-09-30 389422 ENSG00000243587 OTTHUMG00000015337 uc063qnh.1 Q5T699 C6orf183 +HGNC:21619 C6orf200 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:21620 C6orf201 chromosome 6 open reading frame 201 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 dJ1013A10.5 2003-11-26 2016-09-30 404220 ENSG00000185689 OTTHUMG00000014160 uc003mwa.5 BC047663 NM_001085401 CCDS43419 Q7Z4U5 MGI:1914011 RGD:1307537 C6orf201 +HGNC:21621 C6orf202 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:17971 C6orf203 chromosome 6 open reading frame 203 protein-coding gene gene with protein product Approved 6q21 06q21 "HSPC230|PRED31" 2003-08-21 2016-09-30 51250 ENSG00000130349 OTTHUMG00000015307 uc003prq.5 AF151064 NM_016487 "CCDS5058|CCDS78167" Q9P0P8 "11042152|11707072" MGI:1915101 RGD:1597785 C6orf203 +HGNC:30986 C6orf215 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-02-22 +HGNC:33769 C6orf222 chromosome 6 open reading frame 222 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 DKFZp779B1540 2007-12-18 2016-09-30 389384 ENSG00000189325 OTTHUMG00000014591 uc003oly.4 NM_001010903 CCDS34439 P0C671 MGI:1925441 RGD:1591066 C6orf222 +HGNC:28692 C6orf223 chromosome 6 open reading frame 223 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 MGC45491 2007-12-19 2016-09-30 221416 ENSG00000181577 OTTHUMG00000014753 uc003own.4 BC032706 NM_153246 "CCDS34459|CCDS55016" Q8N319 12477932 C6orf223 +HGNC:34431 C6orf226 chromosome 6 open reading frame 226 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 LOC441150 2009-02-06 2016-09-30 441150 ENSG00000221821 OTTHUMG00000156926 uc003osw.3 "BC051007|BC060325" NM_001008739 CCDS43463 Q5I0X4 MGI:1914351 RGD:1596723 C6orf226 +HGNC:49394 C6orf229 chromosome 6 open reading frame 229 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 2014-01-02 2016-09-30 101928603 ENSG00000260286 OTTHUMG00000177257 NM_001282492 CCDS64366 H3BNL8 MGI:1916676 RGD:7707229 +HGNC:1346 C7 complement C7 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 complement component 7 "Complement system|Sushi domain containing" "492|1179" 2001-06-22 2016-08-10 2016-10-12 730 ENSG00000112936 OTTHUMG00000150340 uc003jmh.5 J03507 NM_000587 CCDS47201 P10643 MGI:88235 RGD:620318 "C7base: Mutation registry for C7 deficiency|http://structure.bmc.lu.se/idbase/C7base/index2.html|LRG_30|http://www.lrg-sequence.org/LRG/LRG_30" C7 217070 160112 +HGNC:21703 C7orf25 chromosome 7 open reading frame 25 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 MGC2821 2003-07-14 2016-09-30 79020 ENSG00000136197 OTTHUMG00000128869 uc064dbc.1 BC001845 NM_024054 "CCDS5466|CCDS47576" Q9BPX7 MGI:2145422 RGD:1308147 C7orf25 +HGNC:21702 C7orf26 chromosome 7 open reading frame 26 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 MGC2718 2003-07-14 2016-09-30 79034 ENSG00000146576 OTTHUMG00000125517 uc003sqo.2 BC005121 NM_024067 "CCDS5353|CCDS78206" Q96N11 MGI:2442621 RGD:1584479 C7orf26 +HGNC:21722 C7orf31 chromosome 7 open reading frame 31 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 2003-07-14 2016-10-05 136895 ENSG00000153790 OTTHUMG00000128497 uc064cdg.1 AK097248 NM_138811 CCDS5394 Q8N865 25074808 MGI:1918071 RGD:1563788 C7orf31 616071 +HGNC:21724 C7orf33 chromosome 7 open reading frame 33 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 2003-07-14 2016-09-30 202865 ENSG00000170279 OTTHUMG00000152756 uc003wew.3 BC021251 NM_145304 CCDS5890 Q8WU49 C7orf33 +HGNC:21750 C7orf34 chromosome 7 open reading frame 34 protein-coding gene gene with protein product Approved 7q34 07q34 CTM-1 2003-07-22 2016-10-05 135927 ENSG00000165131 OTTHUMG00000152664 uc003wca.3 BC014596 NM_178829 CCDS5876 Q96L11 12477932 MGI:1923856 RGD:1595510 C7orf34 +HGNC:25604 C7orf43 chromosome 7 open reading frame 43 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FLJ10925 2006-08-08 2016-09-30 55262 ENSG00000146826 OTTHUMG00000154862 uc003utr.4 NM_018275 "CCDS5687|CCDS78261" Q8WVR3 12477932 MGI:2385896 RGD:1305455 C7orf43 +HGNC:22432 C7orf49 chromosome 7 open reading frame 49 protein-coding gene gene with protein product Approved 7q33 07q33 "MGC5242|FLJ27285|FLJ22450|MRI" modulator of retrovirus infection 2006-09-08 2016-09-30 78996 ENSG00000122783 OTTHUMG00000155447 uc003vsl.4 BC000168 NM_024033 "CCDS5838|CCDS59082|CCDS75663" Q9BWK5 17043244 MGI:1925662 RGD:1563238 C7orf49 616980 +HGNC:22421 C7orf50 chromosome 7 open reading frame 50 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "MGC11257|YCR016W" 2007-06-15 2016-09-30 84310 ENSG00000146540 OTTHUMG00000151477 uc003sju.3 BC006224 NM_032350 CCDS5320 Q9BRJ6 MGI:1920462 RGD:1566418 C7orf50 +HGNC:44671 C7orf55-LUC7L2 C7orf55-LUC7L2 readthrough other readthrough Approved 7q34 07q34 2013-02-14 2015-08-19 100996928 ENSG00000269955 OTTHUMG00000151717 uc011kqt.4 NM_001244584 CCDS59084 +HGNC:22247 C7orf57 chromosome 7 open reading frame 57 protein-coding gene gene with protein product Approved 7p12.3 07p12.3 2007-10-17 2016-09-30 136288 ENSG00000164746 OTTHUMG00000155808 uc003toh.6 BC031107 NM_001100159 "CCDS47583|CCDS59054|CCDS75594" Q8NEG2 MGI:3651127 RGD:1587626 C7orf57 +HGNC:22135 C7orf61 chromosome 7 open reading frame 61 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 IMAGE:4839025 2008-07-18 2016-09-30 402573 ENSG00000185955 OTTHUMG00000150234 uc003uuz.1 NM_001004323 CCDS47661 Q8IZ16 12690205 MGI:1926079 RGD:2324075 C7orf61 +HGNC:22402 C7orf62 chromosome 7 open reading frame 62 protein-coding gene gene with protein product Approved 7q21.13 07q21.13 MGC26647 2008-07-21 2016-09-30 219557 ENSG00000164645 OTTHUMG00000153859 uc003ujv.4 BC028365 NM_152706 CCDS34678 Q8TBZ9 12690205 MGI:1918170 RGD:1564345 C7orf62 +HGNC:34432 C7orf65 chromosome 7 open reading frame 65 other unknown Approved 7p12.3 07p12.3 FLJ44108 2009-02-02 2016-09-30 401335 ENSG00000221845 OTTHUMG00000155550 uc010kyp.2 NM_001123065 Q6ZTY9 C7orf65 +HGNC:33712 C7orf66 chromosome 7 open reading frame 66 other unknown Approved 7q31.1 07q31.1 2009-03-06 2016-09-30 154907 ENSG00000205174 OTTHUMG00000154867 uc003vfo.4 AF103078 NM_001024607 A4D0T2 C7orf66 +HGNC:21911 C7orf69 chromosome 7 open reading frame 69 other unknown Approved 7p12.3 07p12.3 FLJ21075 2009-04-08 2016-09-30 80099 ENSG00000136275 OTTHUMG00000155648 uc064dnq.1 BC113681 NM_025031 Q9H7B7 C7orf69 +HGNC:22364 C7orf71 chromosome 7 open reading frame 71 other unknown Approved 7p15.2 07p15.2 2009-09-11 2016-09-30 285941 ENSG00000222004 OTTHUMG00000152860 uc064cex.1 NM_001145531 A4D174 C7orf71 +HGNC:22564 C7orf72 chromosome 7 open reading frame 72 protein-coding gene gene with protein product Approved 7p12.2 07p12.2 2009-10-14 2016-09-30 100130988 ENSG00000164500 OTTHUMG00000155883 uc011kcj.3 NM_001161834 CCDS47585 A4D263 MGI:1921112 RGD:1309870 C7orf72 +HGNC:41909 C7orf73 chromosome 7 open reading frame 73 protein-coding gene gene with protein product Approved 7q33 07q33 PL-5283 2011-08-04 2016-09-30 647087 ENSG00000243317 OTTHUMG00000155495 uc003vsy.4 NM_001130929 CCDS55168 E0CX11 RGD:1591053 C7orf73 +HGNC:33815 C7orf76 chromosome 7 open reading frame 76 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 FLJ42280 2012-12-12 2016-09-30 401388 AK124274 NM_001201450 CCDS75638 Q6ZVN7 +HGNC:51256 C7orf77 chromosome 7 open reading frame 77 protein-coding gene gene with protein product Approved 7q31.33 07q31.33 2015-03-18 2016-09-30 154872 ENSG00000275356 OTTHUMG00000189249 NM_001024603 CCDS75657 A4D0Y5 +HGNC:1352 C8A complement C8 alpha chain protein-coding gene gene with protein product Approved 1p32.2 01p32.2 "complement component 8, alpha polypeptide|complement component 8 alpha subunit" Complement system 492 2001-06-22 2016-08-10 2016-10-12 731 ENSG00000157131 OTTHUMG00000008306 uc001cyo.3 M16974 NM_000562 CCDS606 P07357 MGI:2668347 RGD:1308355 LRG_139|http://www.lrg-sequence.org/LRG/LRG_139 C8A 120950 160117 +HGNC:1353 C8B complement C8 beta chain protein-coding gene gene with protein product Approved 1p32.2 01p32.2 complement component 8, beta polypeptide Complement system 492 2001-06-22 2016-08-10 2016-10-12 732 ENSG00000021852 OTTHUMG00000008305 uc001cyp.5 M16973 XM_017002235 "CCDS30730|CCDS60151|CCDS60152" P07358 MGI:88236 RGD:2239 "C8Bbase: Mutation registry for C8B deficiency|http://structure.bmc.lu.se/idbase/C8Bbase/|LRG_31|http://www.lrg-sequence.org/LRG/LRG_31" C8B 120960 160119 +HGNC:1354 C8G complement C8 gamma chain protein-coding gene gene with protein product Approved 9q34.3 09q34.3 complement component 8, gamma polypeptide "Complement system|Lipocalins" "492|631" 1988-05-11 2016-08-10 2016-10-05 733 ENSG00000176919 OTTHUMG00000020955 uc004cka.3 X06465 XR_245338 CCDS7017 P07360 MGI:88237 RGD:1309074 C8G 120930 160121 +HGNC:1357 C8orf4 chromosome 8 open reading frame 4 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "TC-1|hTC-1|TC1" human thyroid cancer 1 2000-07-12 2016-10-05 56892 ENSG00000176907 OTTHUMG00000164045 uc003xnq.3 AF268037 NM_020130 CCDS6115 Q9NR00 "11056052|24937306" MGI:1916318 RGD:6499724 C8orf4 607702 +HGNC:15542 C8orf6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-09-11 +HGNC:15627 C8orf15 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-09-11 +HGNC:15628 C8orf16 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-09-11 +HGNC:17737 C8orf17 chromosome 8 open reading frame 17 other unknown Approved 8q24.3 08q24.3 MOST-1 2002-03-13 2016-09-30 100507249 ENSG00000250733 OTTHUMG00000140391 uc064qpr.1 AF220264 Q9NRJ1 17143515 616992 +HGNC:31745 C8orf22 chromosome 8 open reading frame 22 protein-coding gene gene with protein product Approved 8q11.21 08q11.21 2004-07-05 2016-09-30 492307 ENSG00000168333 OTTHUMG00000164217 uc003xqq.6 BC017981 NM_001007176 "CCDS47854|CCDS59101|CCDS59102" Q8WWR9 C8orf22 +HGNC:29042 C8orf27 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-27 +HGNC:25912 C8orf28 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:15681 C8orf29 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:26731 C8orf31 chromosome 8 open reading frame 31 other unknown Approved 8q24.3 08q24.3 FLJ37131 2005-07-18 2016-09-30 286122 ENSG00000177335 OTTHUMG00000164771 uc003yxq.2 NM_173687 Q8N9H6 C8orf31 +HGNC:26104 C8orf33 chromosome 8 open reading frame 33 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FLJ20989 2005-07-19 2016-09-30 65265 ENSG00000182307 OTTHUMG00000165256 uc003zfc.5 NM_023080 CCDS34974 Q9H7E9 MGI:2152337 RGD:1597990 C8orf33 +HGNC:30905 C8orf34 chromosome 8 open reading frame 34 protein-coding gene gene with protein product Approved 8q13.2 08q13.2 "vest-1|VEST1" vestibule 1 2005-07-20 2016-10-05 116328 ENSG00000165084 OTTHUMG00000164438 uc010lyz.4 AB056652 NM_052958 CCDS6203 Q49A92 MGI:2444149 RGD:1564053 C8orf34 +HGNC:27840 C8orf34-AS1 C8orf34 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q13.2 08q13.2 2015-03-05 2015-03-05 286189 ENSG00000248801 OTTHUMG00000164449 BC041480 NR_038877 12477932 +HGNC:27232 C8orf37 chromosome 8 open reading frame 37 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "FLJ30600|CORD16|RP64|BBS21" Bardet-Biedl syndrome associated 980 2005-07-27 2016-09-30 157657 ENSG00000156172 OTTHUMG00000164663 uc003yho.3 AK055162 NM_177965 CCDS6268 Q96NL8 "22177090|26854863" MGI:1914407 RGD:1549749 C8orf37 614477 288971 +HGNC:50444 C8orf37-AS1 C8orf37 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q22.1 08q22.1 tospeak 2014-04-29 2014-04-29 100616530 ENSG00000253773 OTTHUMG00000164661 NR_038201 +HGNC:25646 C8orf44 chromosome 8 open reading frame 44 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 FLJ11267 2005-08-04 2005-08-09 2016-09-30 56260 ENSG00000213865 OTTHUMG00000164562 uc003xwo.3 AK002129 NM_019607 CCDS6193 Q96CB5 12477932 C8orf44 +HGNC:48354 C8orf44-SGK3 C8orf44-SGK3 readthrough other readthrough Approved 8q13.1 08q13.1 2013-05-10 2013-05-10 100533105 ENSG00000270024 OTTHUMG00000183957 NM_001204173 MGI:2182368 +HGNC:28498 C8orf46 chromosome 8 open reading frame 46 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 MGC33510 2005-08-04 2016-09-30 254778 ENSG00000169085 OTTHUMG00000156998 uc003xwg.4 BC028400 NM_152765 CCDS6191 Q8TAG6 12477932 MGI:1924232 RGD:1561849 C8orf46 +HGNC:26345 C8orf48 chromosome 8 open reading frame 48 protein-coding gene gene with protein product Approved 8p22 08p22 FLJ25402 2005-08-11 2016-09-30 157773 ENSG00000164743 OTTHUMG00000165482 uc003wwp.4 AK058131 NM_001007090 CCDS47809 Q96LL4 12477932 MGI:2142538 RGD:1585243 C8orf48 +HGNC:32200 C8orf49 chromosome 8 open reading frame 49 other unknown Approved 8p23.1 08p23.1 "FLJ30972|G4DM" GATA4 downstream membrane protein 2005-08-11 2016-09-30 606553 ENSG00000255394 OTTHUMG00000165224 uc003wud.2 AK055534 NR_103552 Q96NF6 C8orf49 +HGNC:32233 C8orf58 chromosome 8 open reading frame 58 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 FLJ34715 2005-09-02 2016-09-30 541565 ENSG00000241852 OTTHUMG00000154160 uc003xce.4 BC012750 NM_001013842 "CCDS34862|CCDS56527|CCDS75708" Q8NAV2 MGI:2145726 RGD:1308117 C8orf58 +HGNC:32235 C8orf59 chromosome 8 open reading frame 59 protein-coding gene gene with protein product Approved 8q21.2 08q21.2 2005-09-05 2016-09-30 401466 ENSG00000176731 OTTHUMG00000164787 uc033brx.2 BC032347 NM_001099670 "CCDS55255|CCDS78351" Q8N0T1 12477932 MGI:1916376 RGD:1565641 C8orf59 +HGNC:51355 C8orf59P1 chromosome 8 open reading frame 59 pseudogene 1 pseudogene pseudogene Approved 10p13 10p13 2014-10-15 2014-10-15 106481719 ENSG00000226209 OTTHUMG00000187414 NG_043371 +HGNC:51357 C8orf59P2 chromosome 8 open reading frame 59 pseudogene 2 pseudogene pseudogene Approved 5p13.2 05p13.2 2014-10-15 2014-10-15 106480687 ENSG00000271378 OTTHUMG00000184568 NG_043304 PGOHUM00000300928 +HGNC:32274 C8orf60 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-01 +HGNC:21804 C8orf63 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:17987 C8orf64 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-27 +HGNC:17988 C8orf65 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:32282 C8orf66 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-04-30 +HGNC:21519 C8orf67 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:32296 C8orf74 chromosome 8 open reading frame 74 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 2005-09-23 2016-09-30 203076 ENSG00000171060 OTTHUMG00000163807 uc003wtd.1 BC038534 NM_001040032 CCDS47800 Q6P047 MGI:1915000 RGD:1565212 C8orf74 +HGNC:25924 C8orf76 chromosome 8 open reading frame 76 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 FLJ14825 2005-09-23 2016-09-30 84933 ENSG00000189376 OTTHUMG00000172562 uc003yqc.3 AK027731 NM_032847 CCDS6341 Q96K31 MGI:1923008 RGD:1310852 C8orf76 +HGNC:33826 C8orf82 chromosome 8 open reading frame 82 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 MGC70857 2008-07-18 2016-10-05 414919 ENSG00000213563 OTTHUMG00000165181 uc003zdp.2 NM_001001795 CCDS34970 Q6P1X6 12477932 MGI:1925941 RGD:1359663 C8orf82 +HGNC:33774 C8orf86 chromosome 8 open reading frame 86 protein-coding gene gene with protein product Approved 8p11.22 08p11.22 FLJ43582 2009-03-03 2016-10-05 389649 ENSG00000196166 OTTHUMG00000163992 uc003xlx.1 BC137511 NM_207412 "CCDS6108|CCDS78337" Q6ZUL3 C8orf86 +HGNC:42974 C8orf87 chromosome 8 open reading frame 87 other unknown Approved 8q22.1 08q22.1 2012-02-17 2016-09-30 389676 ENSG00000279847 OTTHUMG00000164196 uc003yft.2 NM_001242668 E5RJ46 +HGNC:44672 C8orf88 chromosome 8 open reading frame 88 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 2013-11-05 2016-09-30 100127983 ENSG00000253250 OTTHUMG00000164011 XM_017012939 CCDS59105 P0DMB2 MGI:3702175 RGD:6487307 +HGNC:51258 C8orf89 chromosome 8 open reading frame 89 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 2014-09-17 2016-09-30 100130301 ENSG00000274443 NM_001243237 CCDS75752 P0DMQ9 MGI:1923049 RGD:6487565 +HGNC:1358 C9 complement C9 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 complement component 9 Complement system 492 1989-03-08 2016-08-10 2016-10-12 735 ENSG00000113600 OTTHUMG00000094767 uc003jlv.5 NM_001737 CCDS3929 P02748 MGI:1098282 RGD:620319 "C9base: Mutation registry for C9 deficiency|http://structure.bmc.lu.se/idbase/C9base/index2.html|LRG_32|http://www.lrg-sequence.org/LRG/LRG_32" C9 120940 160126 +HGNC:13246 C9orf1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-12-15 +HGNC:1361 C9orf3 chromosome 9 open reading frame 3 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 "C90RF3|FLJ14675|APO|AOPEP|AP-O" 1999-01-28 2016-10-05 84909 ENSG00000148120 OTTHUMG00000020276 uc004ava.3 AF043896 NM_032823 "CCDS6713|CCDS55327|CCDS55328" Q8N6M6 15687497 MGI:1919311 RGD:1309592 C9orf3 M01.028 objectId:1561 +HGNC:17823 C9orf16 chromosome 9 open reading frame 16 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "EST00098|FLJ12823|MGC4639" 2002-01-29 2016-10-05 79095 ENSG00000171159 OTTHUMG00000020731 uc004btp.1 AK022885 NM_024112 CCDS6893 Q9BUW7 10369878 MGI:1920987 RGD:1561113 C9orf16 +HGNC:19919 C9orf24 chromosome 9 open reading frame 24 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "bA573M23.4|NYD-SP22|MGC32921|MGC33614|CBE1|SMRP1" "ciliated bronchial epithelium 1|spermatid-specific manchette-related protein 1" 2002-12-03 2016-10-05 84688 ENSG00000164972 OTTHUMG00000000437 uc003zuh.3 BC029484 NM_147169 "CCDS6553|CCDS6554|CCDS6555|CCDS59121" Q8NCR6 "12029067|15242845|18163442" MGI:1920971 RGD:1561916 C9orf24 +HGNC:23374 C9orf33 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:23398 C9orf38 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:23433 C9orf40 chromosome 9 open reading frame 40 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 FLJ10110 2003-11-18 2016-10-05 55071 ENSG00000135045 OTTHUMG00000020031 uc004ajo.5 AK000972 NM_017998 CCDS6648 Q8IXQ3 MGI:3583960 RGD:1563237 C9orf40 +HGNC:51188 C9orf41-AS1 C9orf41 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q21.13 09q21.13 2014-08-01 2014-08-01 101927380 ENSG00000203321 OTTHUMG00000020029 BC043649 NR_121183 +HGNC:23570 C9orf43 chromosome 9 open reading frame 43 protein-coding gene gene with protein product Approved 9q32 09q32 MGC17358 2003-11-24 2016-10-05 257169 ENSG00000157653 OTTHUMG00000020526 uc004bho.6 BC026884 NM_152786 CCDS6796 Q8TAL5 12477932 MGI:3045314 RGD:1563460 C9orf43 +HGNC:23669 C9orf47 chromosome 9 open reading frame 47 protein-coding gene gene with protein product Approved 9q22.1 09q22.1 "FLJ37523|bA791O21.3" C9orf108 chromosome 9 open reading frame 108 2003-12-01 2004-11-04 2016-09-30 286223 ENSG00000186354 OTTHUMG00000020172 uc004aqd.4 AK094842 NM_182599 "CCDS35062|CCDS47989" Q6ZRZ4 C9orf47 +HGNC:23677 C9orf50 chromosome 9 open reading frame 50 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 FLJ35803 2005-12-22 2016-10-05 375759 ENSG00000179058 OTTHUMG00000020786 uc004byc.4 AK093122 NM_199350 CCDS35159 Q5SZB4 MGI:1923631 RGD:1311084 C9orf50 +HGNC:20950 C9orf56 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:27037 C9orf57 chromosome 9 open reading frame 57 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 2004-01-06 2016-10-05 138240 ENSG00000204669 OTTHUMG00000020003 uc004aip.4 BC036255 NM_001128618 CCDS47980 Q5W0N0 12477932 MGI:3781620 RGD:6490675 C9orf57 +HGNC:28581 C9orf62 chromosome 9 open reading frame 62 other unknown Approved 9q34.3 09q34.3 MGC35463 2004-01-06 2016-09-30 157927 ENSG00000178243 OTTHUMG00000020900 uc004cfo.4 BC034752 NM_173520 Q8N4C0 12477932 C9orf62 +HGNC:26093 C9orf63 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-05-02 +HGNC:28144 C9orf64 chromosome 9 open reading frame 64 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 MGC10999 2004-01-06 2016-10-05 84267 ENSG00000165118 OTTHUMG00000020111 uc004anb.4 AK090882 NM_032307 "CCDS6666|CCDS83381" Q5T6V5 24911101 MGI:1917403 RGD:1311345 C9orf64 611342 +HGNC:26436 C9orf66 chromosome 9 open reading frame 66 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 FLJ31158 2004-01-06 2016-09-30 157983 ENSG00000183784 OTTHUMG00000021017 uc003zge.5 AK055720 NM_152569 CCDS6439 Q5T8R8 RGD:9462182 C9orf66 +HGNC:31009 C9orf69 chromosome 9 open reading frame 69 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 bA83N9.1 2004-05-27 2012-07-05 2012-07-05 2016-09-30 90120 ENSG00000238227 OTTHUMG00000020922 uc004cgx.6 NM_152833 CCDS59155 H0YL14 21667337 MGI:1924939 RGD:1564379 C9orf69 +HGNC:28337 C9orf72 chromosome 9 open reading frame 72 protein-coding gene gene with protein product Approved 9p21.2 09p21.2 "MGC23980|DENNL72" DENN/MADD domain containing 504 2004-01-06 2016-10-12 203228 ENSG00000147894 OTTHUMG00000019716 uc022bfa.2 AL832467 NM_018325 "CCDS6522|CCDS6523" Q96LT7 "21944778|24549040" MGI:1920455 RGD:1359108 LRG_658|http://www.lrg-sequence.org/LRG/LRG_658 C9orf72 614260 286546 +HGNC:24932 C9orf78 chromosome 9 open reading frame 78 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "HSPC220|HCA59" Hepatocellular carcinoma-associated antigen 59 2004-01-27 2016-10-05 51759 ENSG00000136819 OTTHUMG00000020796 uc004byp.4 BC017570 NM_016520 CCDS6931 Q9NZ63 "11042152|12097419" MGI:2385132 RGD:1305178 C9orf78 +HGNC:26535 C9orf84 chromosome 9 open reading frame 84 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 FLJ32779 2004-01-29 2016-10-05 158401 ENSG00000165181 OTTHUMG00000020495 uc004bfr.5 AL833535 NM_173521 "CCDS6781|CCDS43863" Q5VXU9 21771883 MGI:2140313 RGD:1586646 C9orf84 +HGNC:28784 C9orf85 chromosome 9 open reading frame 85 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 MGC61599 2004-02-06 2016-10-05 138241 ENSG00000155621 OTTHUMG00000020002 uc004ain.4 BC010179 NM_182505 CCDS6639 Q96MD7 12477932 MGI:1913456 RGD:1359158 C9orf85 +HGNC:19054 C9orf92 chromosome 9 open reading frame 92 protein-coding gene gene with protein product Approved 9p22.3 09p22.3 Em:AL513424.1 2004-06-02 2016-09-30 100129385 ENSG00000205549 OTTHUMG00000019588 uc031tcu.2 NM_001271829 CCDS65012 A6NGG3 C9orf92 +HGNC:31370 C9orf106 chromosome 9 open reading frame 106 other unknown Approved 9q34.11 09q34.11 bA65J3.5 2004-06-02 2013-12-05 2013-12-05 2016-09-30 414318 ENSG00000179082 OTTHUMG00000020781 uc004bxs.3 AK092588 NM_001012715 Q8NAJ2 C9orf106 +HGNC:28435 C9orf116 chromosome 9 open reading frame 116 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "MGC29761|RbEST47|PIERCE1" p53-induced expression 1 in Rb−/− cells 2004-03-25 2016-09-30 138162 ENSG00000160345 OTTHUMG00000020902 uc004cft.2 BC021261 NM_144654 "CCDS6989|CCDS43899" Q5BN46 12477932 MGI:1916577 RGD:1306233 C9orf116 614502 +HGNC:25943 C9orf118 chromosome 9 open reading frame 118 other unknown Approved 9q22.32 09q22.32 bA342C23.1 2004-06-02 2016-09-30 414312 A6NHY6 C9orf118 +HGNC:31116 C9orf129 chromosome 9 open reading frame 129 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 bA165J3.3 2004-08-25 2016-09-30 445577 ENSG00000204352 OTTHUMG00000020248 uc010mre.3 NM_001098808 CCDS43850 Q5T035 C9orf129 +HGNC:31418 C9orf131 chromosome 9 open reading frame 131 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 MGC41945 2006-06-30 2016-09-30 138724 ENSG00000174038 OTTHUMG00000019853 uc003zvw.4 BC045643 NM_203299 "CCDS6572|CCDS47961|CCDS47962" Q5VYM1 MGI:1914567 RGD:2321337 C9orf131 +HGNC:31422 C9orf135 chromosome 9 open reading frame 135 protein-coding gene gene with protein product Approved 9q21.12 09q21.12 2006-06-30 2013-06-07 2013-06-07 2016-10-05 138255 ENSG00000204711 OTTHUMG00000019985 uc004ahl.4 NM_001010940 "CCDS35041|CCDS78403" Q5VTT2 MGI:1914733 RGD:1560242 C9orf135 +HGNC:48713 C9orf135-AS1 C9orf135 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9q21.12 09q21.12 2013-06-07 2013-06-07 494558 ENSG00000225626 OTTHUMG00000019983 NR_038833 +HGNC:31426 C9orf139 chromosome 9 open reading frame 139 other unknown Approved 9q34.3 09q34.3 "FLJ36268|FLJ42909" 2006-06-30 2016-09-30 401563 ENSG00000180539 OTTHUMG00000020959 uc004ckp.2 NM_207511 Q6ZV77 C9orf139 +HGNC:27849 C9orf142 chromosome 9 open reading frame 142 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "PAXX|XLS" paralog of XRCC4 and XLF 2006-01-31 2016-09-30 286257 ENSG00000148362 OTTHUMG00000020971 uc004cki.3 BC002613 NM_183241 CCDS7020 Q9BUH6 25574025 MGI:2442831 RGD:1306215 C9orf142 616315 +HGNC:31438 C9orf147 chromosome 9 open reading frame 147 other unknown Approved 9q32 09q32 bA32M23.3 2007-08-02 2016-09-30 100133204 ENSG00000230185 OTTHUMG00000020505 uc064vck.1 AK131020 XR_079257 C9orf147 +HGNC:26140 C9orf149 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:31455 C9orf152 chromosome 9 open reading frame 152 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 bA470J20.2 2004-04-20 2016-09-30 401546 ENSG00000188959 OTTHUMG00000020478 uc011lwk.3 BX648620 NM_001012993 CCDS35102 Q5JTZ5 MGI:2442889 RGD:1589037 C9orf152 +HGNC:31456 C9orf153 chromosome 9 open reading frame 153 protein-coding gene gene with protein product Approved 9q21.33 09q21.33 bA507D14.1 2004-04-20 2016-10-05 389766 ENSG00000187753 OTTHUMG00000020134 uc031teh.1 NM_001010907 CCDS35055 Q5TBE3 MGI:1918150 RGD:6488044 C9orf153 +HGNC:26718 C9orf163 chromosome 9 open reading frame 163 other unknown Approved 9q34.3 09q34.3 FLJ36779 2006-03-21 2016-09-30 158055 ENSG00000196366 OTTHUMG00000131725 uc004chy.4 AK055336 NM_152571 Q8N9P6 C9orf163 +HGNC:33817 C9orf170 chromosome 9 open reading frame 170 other unknown Approved 9q21.33 09q21.33 FLJ45537 2009-02-11 2016-09-30 401535 ENSG00000204446 OTTHUMG00000159587 uc064uce.1 AK127445 NM_001001709 A2RU37 C9orf170 +HGNC:37284 C9orf172 chromosome 9 open reading frame 172 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 2009-09-11 2016-09-30 389813 ENSG00000232434 OTTHUMG00000187258 uc011meh.3 NM_001080482 CCDS48059 C9J069 MGI:2685842 RGD:1560470 C9orf172 +HGNC:13230 C10orf1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:23355 C10orf10 chromosome 10 open reading frame 10 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "DEPP|FIG|Fseg" "decidual protein induced by progesterone|fasting induced|fat-specific expressed gene" 2003-11-12 2016-09-30 11067 ENSG00000165507 OTTHUMG00000018063 uc001jbr.5 AB022718 NM_007021 CCDS7210 Q9NTK1 "24530860|19937567|16123073" MGI:1918730 RGD:1565700 C10orf10 611309 +HGNC:23405 C10orf11 chromosome 10 open reading frame 11 protein-coding gene gene with protein product Approved 10q22.2-q22.3 10q22.2-q22.3 "CDA017|OCA7" oculocutaneous albinism 7, autosomal recessive 2004-01-15 2016-10-11 83938 ENSG00000148655 OTTHUMG00000018532 uc001jxi.4 AF267860 NM_032024 "CCDS7351|CCDS76319" Q9H2I8 23395477 MGI:1923883 RGD:1596707 C10orf11 614537 354069 +HGNC:23420 C10orf12 chromosome 10 open reading frame 12 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "DKFZP564P1916|FLJ13022" 2003-11-18 2016-09-30 26148 ENSG00000155640 OTTHUMG00000018840 uc001kmv.4 BC024315 NM_015652 CCDS7452 Q8N655 24550272 MGI:2685186 C10orf12 +HGNC:23509 C10orf25 chromosome 10 open reading frame 25 other unknown Approved 10q11.21 10q11.21 FLJ30567 2003-11-21 2016-09-30 220979 ENSG00000165511 OTTHUMG00000018066 uc057syf.1 AK055129 NM_145022 Q5T742 C10orf25 +HGNC:23519 C10orf35 chromosome 10 open reading frame 35 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 2003-11-21 2016-10-05 219738 ENSG00000171224 OTTHUMG00000018383 uc001jpq.5 BC013587 NM_145306 CCDS7295 Q96D05 12477932 MGI:1917144 RGD:1305587 C10orf35 +HGNC:27421 C10orf53 chromosome 10 open reading frame 53 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 Em:AC069546.1 2004-05-27 2016-09-30 282966 ENSG00000178645 OTTHUMG00000018199 uc001jib.4 BC028127 NM_182554 "CCDS31202|CCDS41521" Q8N6V4 12477932 MGI:1914335 RGD:1586999 C10orf53 +HGNC:30085 C10orf54 chromosome 10 open reading frame 54 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "SISP1|GI24|B7-H5|B7H5|VISTA|PD-1H" "stress induced secreted protein 1|V-domain Ig suppressor of T cell activation|PDCD1 homolog" V-set domain containing 590 2005-10-06 2016-09-30 64115 ENSG00000107738 OTTHUMG00000018426 uc001jsd.5 AF193048 NM_022153 CCDS31218 Q9H7M9 "12975309|24691993|25279955" MGI:1921298 RGD:1590938 C10orf54 615608 +HGNC:31008 C10orf55 chromosome 10 open reading frame 55 other unknown Approved 10q22.2 10q22.2 bA417O11.3 2004-05-27 2016-09-30 414236 ENSG00000222047 OTTHUMG00000018496 uc057ueo.1 NM_001001791 CCDS53541 Q5SWW7 C10orf55 +HGNC:23294 C10orf62 chromosome 10 open reading frame 62 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 bA548K23.1 2004-05-27 2016-09-30 414157 ENSG00000203942 OTTHUMG00000018858 uc001koa.4 NM_001009997 CCDS31261 Q5T681 MGI:1914015 RGD:1588156 C10orf62 +HGNC:28716 C10orf67 chromosome 10 open reading frame 67 protein-coding gene gene with protein product Approved 10p12.2 10p12.2 "MGC46732|bA215C7.4" "LINC01552|C10orf115" "long intergenic non-protein coding RNA 1552|chromosome 10 open reading frame 115" 2004-02-04 2016-10-05 256815 ENSG00000179133 OTTHUMG00000017818 uc010qcx.3 BC035732 NM_153714 CCDS44365 Q8IYJ2 12477932 MGI:1918087 RGD:1598031 C10orf67 +HGNC:26973 C10orf71 chromosome 10 open reading frame 71 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 FLJ45913 2004-02-05 2016-09-30 118461 ENSG00000177354 OTTHUMG00000018190 uc021pqa.3 AL833265 NM_199459 CCDS44387 Q711Q0 MGI:3588196 RGD:1564899 C10orf71 +HGNC:45007 C10orf71-AS1 C10orf71 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q11.23 10q11.23 2013-01-07 2013-01-07 100506769 ENSG00000236208 OTTHUMG00000018189 uc031wgg.2 "AL598801|AL598689|DA764276" NR_108038 +HGNC:25788 C10orf76 chromosome 10 open reading frame 76 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 FLJ13114 2004-02-17 2016-09-30 79591 ENSG00000120029 OTTHUMG00000018943 uc009xwy.2 AK023176 NM_024541 CCDS41563 Q5T2E6 14702039 MGI:1918867 RGD:9299787 C10orf76 +HGNC:28500 C10orf82 chromosome 10 open reading frame 82 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "MGC33547|Em:AC016825.4" 2004-02-18 2016-10-05 143379 ENSG00000165863 OTTHUMG00000019105 uc001lcr.3 BC021737 NM_144661 "CCDS7596|CCDS81510" Q8WW14 12477932 MGI:1914757 RGD:1584737 C10orf82 +HGNC:25822 C10orf88 chromosome 10 open reading frame 88 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "FLJ13490|Em:AC073585.5" 2004-03-16 2016-09-30 80007 ENSG00000119965 OTTHUMG00000019190 uc001lgw.3 AK023552 NM_024942 CCDS7632 Q9H8K7 "12477932|22785457" MGI:1915527 RGD:1305014 C10orf88 +HGNC:26563 C10orf90 chromosome 10 open reading frame 90 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 "FLJ32938|bA422P15.2|FATS" fragile-site associated tumor suppressor 2004-03-16 2016-09-30 118611 ENSG00000154493 OTTHUMG00000019245 uc001ljq.4 BC034828 NM_001004298 CCDS31310 Q96M02 "20843368|20154723" MGI:1196431 RGD:2311471 C10orf90 +HGNC:27275 C10orf91 chromosome 10 open reading frame 91 other unknown Approved 10q26.3 10q26.3 bA432J24.4 2004-03-16 2016-09-30 170393 ENSG00000180066 OTTHUMG00000019289 uc057wxm.1 BC030794 NM_173541 Q5T1B1 12477932 C10orf91 +HGNC:25880 C10orf95 chromosome 10 open reading frame 95 other unknown Approved 10q24.32 10q24.32 FLJ14280 2004-04-07 2014-02-19 2014-02-19 2016-09-30 79946 ENSG00000120055 OTTHUMG00000018959 uc001kvo.2 AK024342 NM_024886 Q9H7T3 RGD:9474711 C10orf95 +HGNC:31428 C10orf99 chromosome 10 open reading frame 99 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "UNQ1833|RLLV1833|FLJ21763|CSBF|AP-57" "colon-derived SUSD2 binding factor|anti-microbial peptide with 57 amino acid residues" 2004-04-16 2016-10-05 387695 ENSG00000188373 OTTHUMG00000018635 uc001kcu.4 AY358751 NM_207373 CCDS7371 Q6UWK7 "12975309|25351403|25585381" MGI:1917295 RGD:1566160 C10orf99 +HGNC:20304 C10orf105 chromosome 10 open reading frame 105 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 FLJ00245 2004-05-27 2016-09-30 414152 ENSG00000214688 OTTHUMG00000018427 uc001jsb.3 AK074172 NM_001164375 CCDS44430 Q8TEF2 MGI:4937089 RGD:2320942 C10orf105 +HGNC:28678 C10orf107 chromosome 10 open reading frame 107 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "bA63A2.1|Em:AC022398.2|MGC44593" 2004-04-16 2016-10-05 219621 ENSG00000183346 OTTHUMG00000018295 uc010qik.3 BC041932 NM_173554 CCDS7262 Q8IVU9 12477932 MGI:1920537 RGD:1306739 C10orf107 +HGNC:28582 C10orf111 chromosome 10 open reading frame 111 other unknown Approved 10p13 10p13 "MGC35468|bA455B2.4" 2004-04-20 2016-09-30 221060 ENSG00000176236 OTTHUMG00000017727 uc001inw.4 BC029034 NM_153244 Q8N326 12477932 C10orf111 +HGNC:31447 C10orf113 chromosome 10 open reading frame 113 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 bA165O3.1 2004-06-02 2016-09-30 387638 ENSG00000204683 OTTHUMG00000017786 uc001iqm.3 NM_001010896 "CCDS31162|CCDS53496" Q5VZT2 RGD:9150675 C10orf113 +HGNC:25707 C10orf120 chromosome 10 open reading frame 120 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 bA318C4.1 2004-05-27 2016-09-30 399814 ENSG00000183559 OTTHUMG00000019187 uc001lgn.3 NM_001010912 CCDS31302 Q5SQS8 MGI:1914681 RGD:1562283 C10orf120 +HGNC:28693 C10orf126 chromosome 10 open reading frame 126 other unknown Approved 10p12.1 10p12.1 "MGC45541|bA492M23.1" 2004-04-28 2016-09-30 283080 ENSG00000204365 OTTHUMG00000017878 uc031wat.2 BC033839 NM_001278522 Q8N4M7 12477932 C10orf126 +HGNC:27274 C10orf128 chromosome 10 open reading frame 128 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 Em:AC084727.5 2004-04-28 2016-09-30 170371 ENSG00000204161 OTTHUMG00000018188 uc001jhn.6 BC031641 NM_001010863 "CCDS41519|CCDS73128" Q5T292 12477932 MGI:1916319 RGD:1561145 C10orf128 +HGNC:31667 C10orf131 chromosome 10 open reading frame 131 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 bA690P14.3 2004-05-27 2016-09-30 100127889 ENSG00000173088 OTTHUMG00000018824 uc010qoo.3 NM_001130446 CCDS58090 A6NCD4 C10orf131 +HGNC:51236 C10orf142 chromosome 10 open reading frame 142 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 2015-03-06 2016-09-30 100130539 ENSG00000277288 OTTHUMG00000189253 NM_001258000 CCDS73090 B7Z368 +HGNC:1163 C11orf1 chromosome 11 open reading frame 1 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 FLJ23499 1998-08-06 2016-09-30 64776 ENSG00000137720 OTTHUMG00000166884 uc001pmd.4 AJ250229 NM_022761 "CCDS8350|CCDS81625" Q9H5F2 10873569 MGI:1915971 RGD:1564937 C11orf1 +HGNC:1169 C11orf16 chromosome 11 open reading frame 16 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 2000-07-31 2016-10-05 56673 ENSG00000176029 OTTHUMG00000165654 uc001mhb.5 AJ400877 NM_020643 CCDS7794 Q9NQ32 11528127 MGI:1928824 RGD:1565905 C11orf16 +HGNC:13231 C11orf21 chromosome 11 open reading frame 21 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 2001-10-05 2016-09-30 29125 ENSG00000110665 OTTHUMG00000009759 uc009ydj.3 AB029488 NM_001142946 CCDS44518 Q9P2W6 11054561 C11orf21 611033 +HGNC:1174 C11orf24 chromosome 11 open reading frame 24 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 DM4E3 2000-05-23 2016-10-05 53838 ENSG00000171067 OTTHUMG00000167478 uc001onr.5 AF264781 NM_022338 "CCDS8180|CCDS73338" Q96F05 "11401438|24312644" MGI:1919306 RGD:1311946 C11orf24 610880 +HGNC:14532 C11orf26 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:23986 C11orf40 chromosome 11 open reading frame 40 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 NOV1 2005-10-03 2016-10-05 143501 ENSG00000171987 OTTHUMG00000165345 uc010qyg.2 NM_144663 CCDS31354 Q8WZ69 C11orf40 +HGNC:28541 C11orf42 chromosome 11 open reading frame 42 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 MGC34805 2005-10-14 2016-09-30 160298 ENSG00000180878 OTTHUMG00000133377 uc001mcj.4 BC031612 NM_173525 CCDS7759 Q8N5U0 12477932 MGI:3643909 RGD:1561034 C11orf42 +HGNC:26805 C11orf44 chromosome 11 open reading frame 44 other unknown Approved 11q24.3 11q24.3 FLJ39058 2005-10-27 2016-09-30 283171 ENSG00000175728 OTTHUMG00000150705 uc031qfg.2 AK096377 NM_173580 Q8N8P7 C11orf44 +HGNC:28584 C11orf45 chromosome 11 open reading frame 45 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "MGC35558|FLJ43646" 2005-10-28 2016-09-30 219833 ENSG00000174370 OTTHUMG00000165796 uc001qeu.3 AK125634 NM_145013 CCDS8478 Q8TAV5 C11orf45 +HGNC:28720 C11orf49 chromosome 11 open reading frame 49 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "FLJ22210|MGC4707" 2006-02-02 2016-09-30 79096 ENSG00000149179 OTTHUMG00000166725 uc001ndp.5 AL136575 NM_024113 "CCDS7925|CCDS31479|CCDS31480|CCDS41641" Q9H6J7 MGI:1915079 RGD:1309540 C11orf49 +HGNC:30531 C11orf52 chromosome 11 open reading frame 52 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "MGC14839|FLJ25219" 2006-02-06 2006-02-06 2016-09-30 91894 ENSG00000149300 OTTHUMG00000166888 uc058hgo.1 AK057948 NM_080659 CCDS8353 Q96A22 MGI:1914202 RGD:1586341 C11orf52 +HGNC:30527 C11orf53 chromosome 11 open reading frame 53 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 MGC50104 2006-02-06 2016-09-30 341032 ENSG00000150750 OTTHUMG00000166656 uc001plc.4 BC039669 NM_198498 CCDS31674 Q8IXP5 25048349 MGI:1917059 RGD:1562914 C11orf53 +HGNC:30204 C11orf54 chromosome 11 open reading frame 54 protein-coding gene gene with protein product Approved 11q21 11q21 PTD012 2006-02-11 2016-09-30 28970 ENSG00000182919 OTTHUMG00000167452 uc001peh.5 AF092133 NM_014039 "CCDS8294|CCDS66204|CCDS73365|CCDS73366" Q9H0W9 16522806 MGI:1918234 RGD:1309534 C11orf54 615810 +HGNC:25569 C11orf57 chromosome 11 open reading frame 57 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 FLJ10726 2006-03-08 2016-09-30 55216 ENSG00000150776 OTTHUMG00000150213 uc001pmt.5 BX538107 NM_018195 "CCDS8356|CCDS41715|CCDS73383" Q6ZUT1 12477932 MGI:2143205 RGD:2293296 C11orf57 +HGNC:16990 C11orf58 chromosome 11 open reading frame 58 protein-coding gene gene with protein product Approved 11p15.2 11p15.2 SMAP small acidic protein 2006-03-09 2016-10-05 10944 ENSG00000110696 OTTHUMG00000165910 uc001mmk.3 BC007103 NM_014267 CCDS7822 O00193 9263035 MGI:1929274 RGD:1311703 C11orf58 +HGNC:32546 C11orf62 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:26288 C11orf63 chromosome 11 open reading frame 63 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 FLJ23554 2006-03-09 2016-09-30 79864 ENSG00000109944 OTTHUMG00000166027 uc001pym.5 BC068507 NM_024806 "CCDS8438|CCDS8439" Q6NUN7 12477932 MGI:1918239 RGD:1309108 C11orf63 +HGNC:28519 C11orf65 chromosome 11 open reading frame 65 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 MGC33948 2006-03-10 2016-09-30 160140 ENSG00000166323 OTTHUMG00000166489 uc058hby.1 BC059411 NM_152587 "CCDS8340|CCDS81622" Q8NCR3 12477932 MGI:1922561 RGD:1311251 C11orf65 +HGNC:28801 C11orf68 chromosome 11 open reading frame 68 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "P5326|BLES03" basophilic leukemia-expressed protein 2006-03-15 2016-10-07 83638 ENSG00000175573 OTTHUMG00000157153 uc009yqv.4 AF073483 NM_031450 "CCDS8122|CCDS44652" Q9H3H3 "16511166|25062915" MGI:2147598 RGD:628612 C11orf68 +HGNC:28188 C11orf70 chromosome 11 open reading frame 70 protein-coding gene gene with protein product Approved 11q22.1 11q22.1 MGC13040 2006-03-31 2016-09-30 85016 ENSG00000137691 OTTHUMG00000167320 uc001pgp.4 AK094851 NM_032930 "CCDS53698|CCDS8313" Q9BRQ4 MGI:3045346 RGD:1591894 C11orf70 +HGNC:25937 C11orf71 chromosome 11 open reading frame 71 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 FLJ20010 2006-03-15 2016-09-30 54494 ENSG00000180425 OTTHUMG00000168247 uc284mzn.1 BC071695 NM_019021 "CCDS8369|CCDS76479" Q6IPW1 12477932 MGI:3643566 RGD:1563941 C11orf71 +HGNC:26915 C11orf72 chromosome 11 open reading frame 72 other unknown Approved 11q13.2 11q13.2 FLJ90834 2006-03-16 2016-09-30 100505621 ENSG00000184224 OTTHUMG00000156309 uc031xsu.2 AK075315 NM_173578 Q8NBR9 23964515 C11orf72 +HGNC:25142 C11orf74 chromosome 11 open reading frame 74 protein-coding gene gene with protein product Approved 11p12 11p12 "FLJ38678|HEPIS|NWC" 2006-03-16 2016-09-30 119710 ENSG00000166352 OTTHUMG00000166397 uc031pzn.2 "AK095997|BC009561" NM_138787 "CCDS7904|CCDS60762" Q86VG3 "15971274|26186194" MGI:1915420 RGD:1309730 C11orf74 +HGNC:26197 C11orf80 chromosome 11 open reading frame 80 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "FLJ22531|TOPOVIBL" 2007-03-13 2016-10-07 79703 ENSG00000173715 OTTHUMG00000167164 uc021qmd.2 NM_024650 "CCDS53664|CCDS76440" Q8N6T0 "18160775|26917764" MGI:2685806 RGD:1563323 C11orf80 616109 +HGNC:25115 C11orf84 chromosome 11 open reading frame 84 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 2008-07-18 2016-09-30 144097 ENSG00000168005 OTTHUMG00000167746 uc001nxt.4 BC007540 NM_138471 CCDS31594 Q9BUA3 12477932 MGI:2147611 RGD:1308106 C11orf84 +HGNC:34442 C11orf86 chromosome 11 open reading frame 86 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 FLJ22675 2008-07-18 2016-10-05 254439 ENSG00000173237 OTTHUMG00000153671 uc010rpm.3 "AK026328|AP003176" NM_001136485 CCDS44656 A6NJI1 MGI:1917111 RGD:1597421 C11orf86 +HGNC:33788 C11orf87 chromosome 11 open reading frame 87 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "LOH11CR1A|LOC399947|NEURIM1" neuronal integral membrane protein 1 2008-07-22 2013-12-13 2013-12-13 2016-09-30 399947 ENSG00000185742 OTTHUMG00000166559 uc010rwb.3 "AB096240|BC035798" NM_207645 CCDS31672 Q6NUJ2 12477932 MGI:2143099 RGD:1642426 C11orf87 +HGNC:25061 C11orf88 chromosome 11 open reading frame 88 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 FLJ46266 hypothetical gene supported by BC039505 2008-07-22 2016-09-30 399949 ENSG00000183644 OTTHUMG00000166720 uc009yyd.3 "BC039505|AK128145" NM_001100388 "CCDS41712|CCDS41713" Q6PI97 12477932 MGI:1921013 RGD:2323814 C11orf88 +HGNC:34444 C11orf91 chromosome 11 open reading frame 91 protein-coding gene gene with protein product Approved 11p13 11p13 2008-09-16 2016-09-30 100131378 ENSG00000205177 OTTHUMG00000166320 uc001mur.3 AL049629 XM_001717207 CCDS53615 Q3C1V1 MGI:1915493 RGD:1563222 C11orf91 +HGNC:37213 C11orf94 chromosome 11 open reading frame 94 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 2009-09-30 2016-09-30 143678 ENSG00000234776 OTTHUMG00000167004 uc001nbs.5 NM_001080446 CCDS44577 C9JXX5 MGI:1916742 RGD:1563263 C11orf94 +HGNC:28449 C11orf95 chromosome 11 open reading frame 95 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 MGC3032 2009-10-02 2016-10-05 65998 ENSG00000188070 OTTHUMG00000167840 uc010rmv.3 "BC000572|AK096306" NM_001144936 CCDS44636 C9JLR9 20607705 MGI:1919667 RGD:1560108 615699 395960 +HGNC:38675 C11orf96 chromosome 11 open reading frame 96 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 AG2 2010-07-20 2016-09-30 387763 ENSG00000187479 OTTHUMG00000166555 uc058apt.1 NM_001145033 CCDS73275 Q7Z7L8 MGI:3652053 RGD:1564664 C11orf96 +HGNC:49544 C11orf97 chromosome 11 open reading frame 97 other unknown Approved 11q21 11q21 LINC01171 long intergenic non-protein coding RNA 1171 2014-01-10 2014-02-20 2014-02-20 2016-09-30 643037 ENSG00000257057 OTTHUMG00000167794 NM_001190462 CCDS81618 MGI:1916575 RGD:1561795 +HGNC:51238 C11orf98 chromosome 11 open reading frame 98 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 C11orf48 2014-10-10 2016-09-30 102288414 ENSG00000278615 OTTHUMG00000167588 NM_001286086 CCDS73306 E9PRG8 MGI:1913526 RGD:1597339 +HGNC:49784 C11orf98P1 chromosome 11 open reading frame 98 pseudogene 1 pseudogene pseudogene Approved 9p22.1 09p22.1 2014-10-10 2014-10-10 106480289 ENSG00000232158 OTTHUMG00000019645 NG_044174 PGOHUM00000236400 +HGNC:1184 C12orf4 chromosome 12 open reading frame 4 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 2000-08-24 2016-10-05 57102 ENSG00000047621 OTTHUMG00000168258 uc001qms.4 AJ272205 NM_020374 CCDS8528 Q9NQ89 25122211 MGI:107893 RGD:1311164 C12orf4 616082 +HGNC:15949 C12orf9 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-05-30 +HGNC:17590 C12orf10 chromosome 12 open reading frame 10 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "MYG|MYG1|Gamm1" "melanocyte related gene|melanocyte proliferating gene 1" 2002-01-18 2016-09-30 60314 ENSG00000139637 OTTHUMG00000170030 uc001scp.5 AF289485 NM_021640 CCDS31810 Q9HB07 16996721 MGI:1929864 RGD:1359237 C12orf10 611366 +HGNC:25322 C12orf29 chromosome 12 open reading frame 29 protein-coding gene gene with protein product Approved 12q21.32 12q21.32 DKFZp434N2030 2006-01-17 2016-09-30 91298 ENSG00000133641 OTTHUMG00000169870 uc001tao.4 AL137488 NM_001009894 CCDS31866 Q8N999 14702039 MGI:1921197 RGD:1307947 C12orf29 +HGNC:26846 C12orf40 chromosome 12 open reading frame 40 protein-coding gene gene with protein product Approved 12q12 12q12 FLJ40126 2006-01-23 2016-09-30 283461 ENSG00000180116 OTTHUMG00000133567 uc001rmc.5 AK097445 NM_173599 "CCDS41770|CCDS81681" Q86WS4 12477932 MGI:3613655 RGD:1584027 C12orf40 +HGNC:24729 C12orf42 chromosome 12 open reading frame 42 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 FLJ25323 2006-01-23 2016-09-30 374470 ENSG00000179088 OTTHUMG00000169988 uc009zuf.3 AK058052 NM_198521 CCDS44963 Q96LP6 MGI:1923890 RGD:1560034 C12orf42 +HGNC:25719 C12orf43 chromosome 12 open reading frame 43 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 FLJ12448 2006-01-23 2016-09-30 64897 ENSG00000157895 OTTHUMG00000169150 uc001tzh.3 AK022510 NM_022895 "CCDS66486|CCDS66487|CCDS9210|CCDS76613" Q96C57 "8619474|9110174" MGI:1919607 RGD:1311899 C12orf43 +HGNC:28628 C12orf45 chromosome 12 open reading frame 45 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 MGC40397 2006-01-23 2016-10-10 121053 ENSG00000151131 OTTHUMG00000169822 uc001tlb.4 BC032326 NM_152318 CCDS41825 Q8N5I9 12477932 MGI:106381 RGD:1563365 C12orf45 +HGNC:26128 C12orf49 chromosome 12 open reading frame 49 protein-coding gene gene with protein product Approved 12q24.22 12q24.22 FLJ21415 2006-01-24 2016-09-30 79794 ENSG00000111412 OTTHUMG00000169392 uc001tvz.2 AK025068 NM_024738 CCDS9179 Q9H741 12477932 MGI:1924042 RGD:1562310 C12orf49 +HGNC:26665 C12orf50 chromosome 12 open reading frame 50 protein-coding gene gene with protein product Approved 12q21.32 12q21.32 FLJ35821 2006-01-24 2016-09-30 160419 ENSG00000165805 OTTHUMG00000169869 uc001tam.2 AK093140 NM_152589 CCDS9031 Q8NA57 12477932 MGI:1913855 RGD:1563125 C12orf50 +HGNC:28553 C12orf54 chromosome 12 open reading frame 54 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 MGC35033 2006-01-24 2016-09-30 121273 ENSG00000177627 OTTHUMG00000170019 uc001rrr.4 BC031670 NM_152319 CCDS8764 Q6X4T0 12477932 MGI:1920552 C12orf54 +HGNC:26967 C12orf56 chromosome 12 open reading frame 56 protein-coding gene gene with protein product Approved 12q14.2 12q14.2 2006-01-26 2016-09-30 115749 ENSG00000185306 OTTHUMG00000168782 uc001ssa.5 NM_001099676 "CCDS44935|CCDS61182" Q8IXR9 MGI:2442001 RGD:1561648 C12orf56 +HGNC:29521 C12orf57 chromosome 12 open reading frame 57 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "GRCC10|C10" 2006-01-27 2016-10-10 113246 ENSG00000111678 OTTHUMG00000169017 uc058knx.1 U47924 NM_138425 "CCDS8571|CCDS76515|CCDS76516" Q99622 "9445485|23453665" MGI:1315201 RGD:2318975 C12orf57 615140 331880 +HGNC:28726 C12orf60 chromosome 12 open reading frame 60 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 MGC47869 2006-02-10 2016-09-30 144608 ENSG00000182993 OTTHUMG00000167473 uc001rcj.5 BC038836 NM_175874 CCDS8667 Q5U649 12477932 MGI:3605234 RGD:1563896 C12orf60 +HGNC:26784 C12orf65 chromosome 12 open reading frame 65 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "FLJ38663|SPG55" 2007-02-26 2016-09-30 91574 ENSG00000130921 OTTHUMG00000168852 uc001uen.4 AK095982 NM_152269 CCDS9244 Q9H3J6 "20598281|22688947|23188110" MGI:1919900 RGD:6498646 C12orf65 613541 242929 +HGNC:26517 C12orf66 chromosome 12 open reading frame 66 protein-coding gene gene with protein product Approved 12q14.2 12q14.2 FLJ32549 2008-06-19 2016-09-30 144577 ENSG00000174206 OTTHUMG00000168763 uc001srw.5 NM_152440 "CCDS41803|CCDS73490|CCDS76574" Q96MD2 12477932 MGI:2670984 RGD:1565498 C12orf66 +HGNC:34452 C12orf71 chromosome 12 open reading frame 71 protein-coding gene gene with protein product Approved 12p11.23 12p11.23 LOC728858 2008-07-25 2016-09-30 728858 ENSG00000214700 OTTHUMG00000169274 uc001rhq.4 NM_001080406 CCDS44851 A8MTZ7 MGI:1920594 RGD:1592184 C12orf71 +HGNC:34450 C12orf73 chromosome 12 open reading frame 73 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "FLJ13975|DKFZp547P055" 2008-10-01 2016-09-30 728568 ENSG00000204954 OTTHUMG00000170119 uc058smq.1 AK024037 NM_001135570 CCDS44964 Q69YU5 MGI:3698433 RGD:1593359 C12orf73 +HGNC:27887 C12orf74 chromosome 12 open reading frame 74 protein-coding gene gene with protein product Approved 12q22 12q22 2009-02-09 2016-09-30 338809 ENSG00000214215 OTTHUMG00000170105 uc001tch.3 BC043363 NM_001037671 "CCDS41819|CCDS53818" Q32Q52 12477932 RGD:7594195 C12orf74 +HGNC:35164 C12orf75 chromosome 12 open reading frame 75 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "OCC-1|OCC1|AGD3" "adipogenesis down-regulated 3|overexpressed in colon carcinoma 1" 2009-03-04 2016-09-30 387882 ENSG00000235162 OTTHUMG00000150129 uc001tlh.4 AK056999 NM_001145199 CCDS55879 Q8TAD7 "11890990|19531736|22935015" MGI:1917034 RGD:6495714 C12orf75 +HGNC:33790 C12orf76 chromosome 12 open reading frame 76 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 FLJ40142 2009-04-14 2016-09-30 400073 ENSG00000174456 OTTHUMG00000169315 uc001tqd.2 BC041968 NM_207435 CCDS9141 Q8N812 RGD:1560398 C12orf76 +HGNC:27282 C12orf77 chromosome 12 open reading frame 77 other unknown Approved 12p12.1 12p12.1 2009-09-30 2016-09-30 196415 ENSG00000226397 OTTHUMG00000170185 uc001rgf.4 BC046192 NM_001101339 C9JDV5 12477932 C12orf77 +HGNC:27473 C12orf80 chromosome 12 open reading frame 80 other unknown Approved 12q13.13 12q13.13 2013-06-20 2016-09-30 283403 ENSG00000257137 OTTHUMG00000169626 BC038743 NM_001242696 RGD:9235721 +HGNC:39276 C13orf41 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-04 +HGNC:1187 C14orf1 chromosome 14 open reading frame 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "NET51|ERG28" 1999-03-19 2016-09-30 11161 ENSG00000133935 OTTHUMG00000171488 uc001xrt.4 AF134159 NM_007176 CCDS9845 Q9UKR5 "10449901|12958361|11160377" MGI:1915571 RGD:1310769 C14orf1 604576 +HGNC:1188 C14orf2 chromosome 14 open reading frame 2 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 MP68 6.8 kDa mitochondrial proteolipid 1999-07-22 2016-09-30 9556 ENSG00000156411 OTTHUMG00000171601 uc059fuw.1 AF054175 NM_001127393 "CCDS9986|CCDS45169" P56378 9653160 MGI:1917507 RGD:2322889 C14orf2 604573 +HGNC:19284 C14orf7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-12-19 +HGNC:19435 C14orf16 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-01-22 +HGNC:19834 C14orf28 chromosome 14 open reading frame 28 protein-coding gene gene with protein product Approved 14q21.2 14q21.2 DRIP-1 dopamine receptor interacting protein 1 2002-11-27 2016-09-30 122525 ENSG00000179476 OTTHUMG00000170722 uc001wvo.4 AA496212 NM_001017923 CCDS32069 Q4W4Y0 MGI:2685373 RGD:1307621 C14orf28 +HGNC:19846 C14orf37 chromosome 14 open reading frame 37 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 2002-11-27 2016-09-30 145407 ENSG00000139971 OTTHUMG00000171173 uc001xdc.4 NM_001001872 CCDS32089 Q86TY3 MGI:1914669 RGD:1310110 C14orf37 +HGNC:19849 C14orf39 chromosome 14 open reading frame 39 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 SIX6OS1 2003-01-13 2012-11-05 2012-11-05 2016-09-30 317761 ENSG00000179008 OTTHUMG00000140332 uc001xez.5 AK098187 NM_174978 CCDS9746 Q8N1H7 MGI:1923051 RGD:1559456 C14orf39 +HGNC:19850 C14orf40 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-12-19 +HGNC:20103 C14orf56 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-09-26 +HGNC:20104 C14orf57 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-09-25 +HGNC:20112 C14orf65 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-02-18 +HGNC:20126 C14orf79 chromosome 14 open reading frame 79 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 2003-01-13 2016-09-30 122616 ENSG00000140104 OTTHUMG00000170474 uc001ypy.2 NM_174891 CCDS42000 Q96F83 MGI:2443738 RGD:1307315 C14orf79 +HGNC:20127 C14orf80 chromosome 14 open reading frame 80 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 2003-01-13 2016-09-30 283643 ENSG00000185347 OTTHUMG00000170426 uc001yrn.4 NM_001134875 "CCDS45180|CCDS45181|CCDS45182|CCDS55955" Q86SX3 MGI:2144738 RGD:1596085 C14orf80 +HGNC:20128 C14orf81 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:20138 C14orf91 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:20162 C14orf93 chromosome 14 open reading frame 93 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ12154 2002-12-19 2016-10-05 60686 ENSG00000100802 OTTHUMG00000028712 uc001wie.5 AK023026 NM_021944 "CCDS9583|CCDS61399|CCDS61400" Q9H972 MGI:1921609 RGD:1565222 C14orf93 +HGNC:20170 C14orf99 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-04 +HGNC:20189 C14orf105 chromosome 14 open reading frame 105 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 FLJ10650 2002-12-20 2016-10-05 55195 ENSG00000100557 OTTHUMG00000140317 uc001xcy.4 AK001512 NM_018168 "CCDS9730|CCDS61458|CCDS61459" Q9NVL8 MGI:1914332 RGD:7568824 C14orf105 +HGNC:20216 C14orf113 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-05-19 +HGNC:20270 C14orf119 chromosome 14 open reading frame 119 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ20671 2003-01-17 2016-09-30 55017 ENSG00000179933 OTTHUMG00000028717 uc001wiu.4 NM_017924 CCDS9588 Q9NWQ9 MGI:1920893 RGD:1308430 C14orf119 +HGNC:20346 C14orf132 chromosome 14 open reading frame 132 other unknown Approved 14q32.2 14q32.2 C14orf88 chromosome 14 open reading frame 88 2003-01-28 2016-09-30 56967 ENSG00000227051 OTTHUMG00000171393 uc001yff.6 AL390130 NM_001252507 "CCDS81847|CCDS81848|CCDS81849" Q9NPU4 C14orf132 +HGNC:20350 C14orf136 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:20358 C14orf144 chromosome 14 open reading frame 144 other unknown Approved 14q32.33 14q32.33 2003-01-28 2016-09-30 145195 BC007749 Q96I85 C14orf144 +HGNC:20496 C14orf157 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-05-30 +HGNC:20498 C14orf159 chromosome 14 open reading frame 159 protein-coding gene gene with protein product Approved 14q32.11 14q32.11 FLJ39975 2003-10-02 2016-09-30 80017 ENSG00000133943 OTTHUMG00000164980 uc001xzb.4 AK097294 NM_024952 "CCDS32141|CCDS41979|CCDS45150|CCDS66693|CCDS73677" Q7Z3D6 MGI:2444813 RGD:1311756 C14orf159 +HGNC:23169 C14orf166 chromosome 14 open reading frame 166 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "CGI-99|RLLM1|CLE|CLE7|LCRP369|hCLE1" RLL motif containing 1 2003-09-25 2016-09-30 51637 ENSG00000087302 OTTHUMG00000152332 uc010aod.4 AF151857 NM_016039 CCDS9705 Q9Y224 "11507205|24608264" MGI:1915295 RGD:1304704 C14orf166 610858 +HGNC:20968 C14orf169 chromosome 14 open reading frame 169 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "FLJ21802|NO66|MAPJD" "nucleolar protein 66|Myc-associated protein with JmjC domain" 2003-11-19 2016-09-30 79697 ENSG00000170468 OTTHUMG00000166530 uc032bfz.2 BC011350 NM_024644 CCDS73660 Q9H6W3 "19927124|17308053|22750859" MGI:1919202 RGD:1307704 611919 1.14.11.27 +HGNC:26375 C14orf177 chromosome 14 open reading frame 177 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 FLJ25773 2006-06-16 2016-09-30 283598 ENSG00000176605 OTTHUMG00000167745 uc001yfz.3 AK098639 NM_182560 CCDS9948 Q52M58 12477932 C14orf177 +HGNC:26385 C14orf178 chromosome 14 open reading frame 178 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FLJ25976 2006-06-16 2016-09-30 283579 ENSG00000197734 OTTHUMG00000171528 uc021rwv.2 AK098842 NM_174943 "CCDS9868|CCDS53906" Q8N769 12477932 C14orf178 +HGNC:33795 C14orf180 chromosome 14 open reading frame 180 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 NRAC nutritionally-regulated adipose and cardiac-enriched C14orf77 chromosome 14 open reading frame 77 2007-11-21 2012-11-12 2012-11-12 2016-09-30 400258 ENSG00000184601 OTTHUMG00000029806 uc001yow.3 NM_001008404 "CCDS32166|CCDS66722" Q8N912 23029450 MGI:2443020 RGD:1583888 C14orf180 +HGNC:33794 C14orf181 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:37224 C14orf184 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:21692 C15orf31 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-30 +HGNC:26549 C15orf32 chromosome 15 open reading frame 32 other unknown Approved 15q26.1 15q26.1 FLJ32831 2005-07-25 2016-09-30 145858 ENSG00000183643 OTTHUMG00000149844 uc002brc.2 NM_153040 Q32M92 C15orf32 +HGNC:32354 C15orf35 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-09-27 +HGNC:38824 C15orf38-AP3S2 C15orf38-AP3S2 readthrough other readthrough Approved 15q26.1 15q26.1 2011-02-21 2014-11-19 100526783 ENSG00000250021 OTTHUMG00000162161 uc002bos.5 NM_001199058.1 CCDS55977 MGI:1917670 +HGNC:24497 C15orf39 chromosome 15 open reading frame 39 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "DKFZP434H132|FLJ46337" 2005-10-24 2005-10-24 2016-10-05 56905 ENSG00000167173 OTTHUMG00000142820 uc002azp.4 AK128205 NM_015492 CCDS10276 Q6ZRI6 MGI:1921461 RGD:1305464 C15orf39 +HGNC:28443 C15orf40 chromosome 15 open reading frame 40 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 MGC29937 2005-10-24 2016-09-30 123207 ENSG00000169609 OTTHUMG00000160473 uc002bjm.4 BC019820 NM_144597 "CCDS32312|CCDS53968|CCDS53969" Q8WUR7 MGI:1914540 RGD:2324773 C15orf40 +HGNC:26929 C15orf41 chromosome 15 open reading frame 41 protein-coding gene gene with protein product Approved 15q14 15q14 "HH114|MGC11326|FLJ22851" 2005-10-24 2016-09-30 84529 ENSG00000186073 OTTHUMG00000172659 uc059hjw.1 BC006254 NM_032499 "CCDS45215|CCDS45216|CCDS81861" Q9Y2V0 MGI:3026886 RGD:1563680 C15orf41 615626 362774 +HGNC:32364 C15orf45 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-06-05 +HGNC:29898 C15orf48 chromosome 15 open reading frame 48 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 NMES1 normal mucosa of esophagus specific 1 2005-11-15 2016-09-30 84419 ENSG00000166920 OTTHUMG00000131424 uc001zvh.5 NM_032413 CCDS10124 Q9C002 12209954 MGI:3034182 RGD:1359583 C15orf48 608409 +HGNC:30928 C15orf49 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-06-08 +HGNC:33488 C15orf52 chromosome 15 open reading frame 52 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 FLJ43339 2007-06-14 2016-09-30 388115 ENSG00000188549 OTTHUMG00000129981 uc001zlh.5 AK124643 NM_207380 CCDS10055 Q6ZUT6 MGI:2685199 RGD:1565536 C15orf52 +HGNC:33796 C15orf53 chromosome 15 open reading frame 53 protein-coding gene gene with protein product Approved 15q14 15q14 FLJ35695 2007-11-21 2016-09-30 400359 ENSG00000175779 OTTHUMG00000129841 uc001zkf.1 NM_207444 CCDS10048 Q8NAA6 C15orf53 +HGNC:33797 C15orf54 chromosome 15 open reading frame 54 other unknown Approved 15q14 15q14 FLJ39531 2007-11-21 2016-09-30 400360 ENSG00000175746 OTTHUMG00000129843 uc059hne.1 NM_207445 Q8N8G6 C15orf54 +HGNC:33868 C15orf56 chromosome 15 open reading frame 56 other unknown Approved 15q15.1 15q15.1 FLJ38596 2007-12-18 2016-09-30 644809 ENSG00000176753 OTTHUMG00000172399 uc001zla.3 NM_001039905 Q8N910 C15orf56 +HGNC:28295 C15orf57 chromosome 15 open reading frame 57 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 MGC20481 CCDC32 coiled-coil domain containing 32 2005-10-21 2008-05-30 2008-05-30 2016-09-30 90416 ENSG00000128891 OTTHUMG00000129993 uc059htc.1 BC012189 NM_052849 "CCDS10060|CCDS42022|CCDS73706" Q9BV29 12477932 MGI:2685477 RGD:1307516 C15orf57 +HGNC:33753 C15orf59 chromosome 15 open reading frame 59 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "MGC131524|LOC388135" 2008-07-10 2016-09-30 388135 ENSG00000205363 OTTHUMG00000172556 uc002avy.4 NM_001039614 CCDS32289 Q2T9L4 25048349 MGI:2442108 RGD:1562618 C15orf59 617128 +HGNC:51422 C15orf59-AS1 C15orf59 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q24.1 15q24.1 TCONS_00023459 2014-11-21 2014-11-21 101929221 ENSG00000260469 OTTHUMG00000172684 NR_120352 +HGNC:34453 C15orf61 chromosome 15 open reading frame 61 protein-coding gene gene with protein product Approved 15q23 15q23 LOC145853 2008-07-25 2016-09-30 145853 ENSG00000189227 OTTHUMG00000172248 uc002aqs.4 NM_001143936 CCDS45289 A6NNL5 MGI:1916728 RGD:1309779 C15orf61 +HGNC:34489 C15orf62 chromosome 15 open reading frame 62 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 LOC643338 2008-08-07 2016-09-30 643338 ENSG00000188277 OTTHUMG00000172536 uc010bby.5 NM_001130448 CCDS45229 A8K5M9 MGI:3651144 RGD:1583955 C15orf62 +HGNC:44654 C15orf65 chromosome 15 open reading frame 65 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 FLJ27352 2013-06-06 2016-09-30 145788 ENSG00000261652 OTTHUMG00000172679 NM_001198784 CCDS58363 H3BRN8 MGI:3648770 RGD:1594626 +HGNC:14176 C16orf43 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-29 +HGNC:19213 C16orf45 chromosome 16 open reading frame 45 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 FLJ32618 2004-12-02 2016-10-05 89927 ENSG00000166780 OTTHUMG00000129883 uc002ddo.4 AK057180 NM_033201 "CCDS10561|CCDS45422" Q96MC5 MGI:1914504 RGD:1305733 C16orf45 +HGNC:26525 C16orf46 chromosome 16 open reading frame 46 protein-coding gene gene with protein product Approved 16q23.2 16q23.2 FLJ32702 2005-02-10 2016-09-30 123775 ENSG00000166455 OTTHUMG00000137629 uc002fgc.5 BC064143 NM_152337 "CCDS10932|CCDS42201" Q6P387 MGI:1916778 RGD:1586501 C16orf46 +HGNC:28329 C16orf47 chromosome 16 open reading frame 47 other unknown Approved 16q22.3 16q22.3 FLJ26184 2005-02-10 2016-09-30 388289 ENSG00000197445 OTTHUMG00000137600 uc032eet.2 AK129695 XM_017023228 Q6ZP98 RGD:9075776 C16orf47 +HGNC:27087 C16orf52 chromosome 16 open reading frame 52 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 2005-04-04 2016-09-30 730094 ENSG00000185716 OTTHUMG00000131587 uc002dkd.3 BC027604 NM_001164579 CCDS58431 Q8NHV5 12477932 MGI:2446240 RGD:7606925 C16orf52 +HGNC:26649 C16orf54 chromosome 16 open reading frame 54 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ35681 2005-04-12 2005-08-09 2016-09-30 283897 ENSG00000185905 OTTHUMG00000132116 uc002dtp.3 AK093000 NM_175900 CCDS10652 Q6UWD8 12975309 MGI:2141979 RGD:1564503 C16orf54 +HGNC:25848 C16orf58 chromosome 16 open reading frame 58 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ13868 2006-02-17 2016-09-30 64755 ENSG00000140688 OTTHUMG00000132466 uc002eci.4 AK023930 NM_022744 CCDS10715 Q96GQ5 MGI:2384572 RGD:1310127 C16orf58 +HGNC:25849 C16orf59 chromosome 16 open reading frame 59 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ13909 2006-02-17 2016-09-30 80178 ENSG00000162062 OTTHUMG00000128859 uc002cqh.4 AK023971 NM_025108 CCDS10468 Q7L2K0 12477932 MGI:1919266 RGD:2293499 C16orf59 +HGNC:24641 C16orf62 chromosome 16 open reading frame 62 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 MGC16824 2007-10-22 2016-09-30 57020 ENSG00000103544 OTTHUMG00000167925 uc059rnn.1 NM_020314 "CCDS32397|CCDS73840" Q7Z3J2 "10493829|25355947" MGI:1918767 RGD:1564485 C16orf62 +HGNC:29564 C16orf70 chromosome 16 open reading frame 70 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "lin-10|FLJ12076" "C16orf6|LIN10" chromosome 16 open reading frame 6 2005-08-17 2006-04-12 2006-04-12 2016-09-30 80262 ENSG00000125149 OTTHUMG00000137510 uc002erd.4 AK022138 NM_025187 CCDS10828 Q9BSU1 12477932 MGI:2443049 RGD:621098 C16orf70 +HGNC:25081 C16orf71 chromosome 16 open reading frame 71 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ43261|DKFZp686H2240" 2006-06-13 2016-09-30 146562 ENSG00000166246 OTTHUMG00000129480 uc002cxn.4 AF447587 NM_139170 CCDS10521 Q8IYS4 12477932 MGI:1921934 RGD:1359596 C16orf71 +HGNC:30103 C16orf72 chromosome 16 open reading frame 72 protein-coding gene gene with protein product Approved 16p13.2 16p13.2 "FLJ41272|PRO0149" 2006-06-14 2016-09-30 29035 ENSG00000182831 OTTHUMG00000178147 uc002czm.4 AK123266 NM_014117 CCDS10538 Q14CZ0 8889548 MGI:1916303 RGD:1309748 C16orf72 +HGNC:23362 C16orf74 chromosome 16 open reading frame 74 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 MGC17624 2006-06-29 2016-09-30 404550 ENSG00000154102 OTTHUMG00000183875 uc002fjc.5 BC009078 NM_206967 CCDS45540 Q96GX8 MGI:1916168 RGD:1309651 C16orf74 +HGNC:28479 C16orf78 chromosome 16 open reading frame 78 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 MGC33367 2006-08-01 2016-09-30 123970 ENSG00000166152 OTTHUMG00000133149 uc002efr.4 BC021181 NM_144602 CCDS10738 Q8WTQ4 12477932 MGI:3607717 RGD:1585876 C16orf78 +HGNC:30755 C16orf82 chromosome 16 open reading frame 82 other unknown Approved 16p12.1 16p12.1 TNT 2007-08-23 2016-09-30 162083 ENSG00000234186 OTTHUMG00000161986 uc059sig.1 BC031257 NM_001145545 Q7Z2V1 12477932 RGD:2304343 +HGNC:33755 C16orf86 chromosome 16 open reading frame 86 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ41802 2008-02-22 2016-09-30 388284 ENSG00000159761 OTTHUMG00000150527 uc002ety.4 NM_001012984 CCDS32468 Q6ZW13 MGI:1918296 RGD:1561415 C16orf86 +HGNC:33754 C16orf87 chromosome 16 open reading frame 87 protein-coding gene gene with protein product Approved 16q11.2 16q11.2 2008-06-13 2016-09-30 388272 ENSG00000155330 OTTHUMG00000132538 uc002eek.2 NM_001001436 CCDS10724 Q6PH81 MGI:1913964 RGD:1308706 C16orf87 +HGNC:28687 C16orf89 chromosome 16 open reading frame 89 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC45438 2008-07-25 2016-09-30 146556 ENSG00000153446 OTTHUMG00000159314 uc010bud.4 NM_152459 "CCDS42116|CCDS45404" Q6UX73 "12975309|20578903" MGI:2146559 RGD:1565166 C16orf89 +HGNC:34455 C16orf90 chromosome 16 open reading frame 90 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 LOC646174 2008-07-25 2016-09-30 646174 ENSG00000215131 OTTHUMG00000154627 uc002cvi.4 NM_001080524 CCDS45397 A8MZG2 MGI:1920511 RGD:1561796 C16orf90 +HGNC:27558 C16orf91 chromosome 16 open reading frame 91 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "gs103|CCSMST1" cattle cerebrum and skeletal muscle-specific protein 1 family member 2009-02-23 2016-09-30 283951 ENSG00000174109 OTTHUMG00000176551 uc002clr.4 BC023590 NM_001010878 CCDS61789 Q4G0I0 MGI:2670966 RGD:1565784 C16orf91 +HGNC:26346 C16orf92 chromosome 16 open reading frame 92 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ25404 2009-04-06 2016-09-30 146378 ENSG00000167194 OTTHUMG00000177107 uc002dvs.2 AK058133 NM_001109659 CCDS42146 Q96LL3 MGI:1925368 RGD:1563217 C16orf92 +HGNC:40033 C16orf95 chromosome 16 open reading frame 95 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 2011-05-23 2016-09-30 100506581 ENSG00000260456 OTTHUMG00000175680 uc002fju.4 NM_001195124 "CCDS54049|CCDS58491|CCDS73921" Q9H693 MGI:1923655 RGD:1584205 C16orf95 +HGNC:40031 C16orf96 chromosome 16 open reading frame 96 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 2011-08-04 2016-09-30 342346 ENSG00000205832 OTTHUMG00000176519 uc010uxn.3 NM_001145011 CCDS53986 A6NNT2 MGI:1926059 RGD:2320756 C16orf96 +HGNC:44658 C16orf97 chromosome 16 open reading frame 97 other unknown Approved 16q12.1 16q12.1 2012-12-12 2016-09-30 388276 ENSG00000261190 OTTHUMG00000173232 uc059udb.1 NM_001242473 H3BN30 +HGNC:1213 C17orf2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-03 +HGNC:1218 C17orf4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1219 C17orf5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1221 C17orf7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1222 C17orf8 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1223 C17orf9 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1201 C17orf10 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:1202 C17orf11 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-07-17 +HGNC:1203 C17orf12 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-07-17 +HGNC:1204 C17orf13 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:1205 C17orf14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-01 +HGNC:1206 C17orf15 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1207 C17orf16 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1208 C17orf17 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1209 C17orf18 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1210 C17orf19 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1214 C17orf20 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-04-18 +HGNC:1215 C17orf21 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-02 +HGNC:1216 C17orf22 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-06-03 +HGNC:26844 C17orf47 chromosome 17 open reading frame 47 protein-coding gene gene with protein product Approved 17q22 17q22 FLJ40121 2005-12-13 2016-10-05 284083 ENSG00000181013 OTTHUMG00000179244 uc002iwq.3 NM_001038704 CCDS32691 Q8NEP4 MGI:3651136 C17orf47 +HGNC:28737 C17orf49 chromosome 17 open reading frame 49 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MGC49942|BAP18|HEPIS" "BPTF associated protein of 18 kDa|human embryo lung cellular protein interacting with SARS-CoV nsp-10" Myb/SANT domain containing 532 2005-12-13 2016-09-30 124944 ENSG00000258315 OTTHUMG00000170147 uc060ahc.1 AK055800 NM_174893 "CCDS32542|CCDS45595|CCDS45596" Q8IXM2 "25456412|27226492" MGI:1915609 RGD:1308134 C17orf49 +HGNC:29581 C17orf50 chromosome 17 open reading frame 50 protein-coding gene gene with protein product Approved 17q12 17q12 2005-12-13 2016-09-30 146853 ENSG00000270806 OTTHUMG00000188389 uc002hjx.4 BC021727 NM_145272 CCDS42298 Q8WW18 MGI:1913580 RGD:1597447 C17orf50 +HGNC:27904 C17orf51 chromosome 17 open reading frame 51 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "FLJ12977|FLJ31874|FLJ33618" 2005-12-13 2016-09-30 339263 ENSG00000212719 OTTHUMG00000186498 uc002gyw.5 BC010612 NM_001113434 CCDS45629 A8MQB3 C17orf51 +HGNC:28460 C17orf53 chromosome 17 open reading frame 53 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 MGC3130 2005-12-15 2016-09-30 78995 ENSG00000125319 OTTHUMG00000181808 uc002ifi.2 AK021656 NM_024032 "CCDS11477|CCDS59293|CCDS82136" Q8N3J3 MGI:2387601 RGD:1305385 C17orf53 +HGNC:27568 C17orf58 chromosome 17 open reading frame 58 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 2005-12-15 2016-09-30 284018 ENSG00000186665 OTTHUMG00000179782 uc002jgi.6 AK026583 NM_181656 "CCDS42375|CCDS45765" Q2M2W7 12477932 MGI:1916316 RGD:1565033 C17orf58 +HGNC:28672 C17orf62 chromosome 17 open reading frame 62 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "MGC4368|FLJ90469" 2005-12-16 2016-09-30 79415 ENSG00000178927 OTTHUMG00000178770 uc002kfb.6 AK074950 NM_001033046 "CCDS32776|CCDS45817" Q9BQA9 21503106 MGI:2384959 RGD:1562022 C17orf62 +HGNC:26990 C17orf64 chromosome 17 open reading frame 64 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 2005-12-16 2016-09-30 124773 ENSG00000141371 OTTHUMG00000157171 uc002iyq.4 BC048806 NM_181707 CCDS32698 Q86WR6 27591891 MGI:1920884 RGD:1310166 C17orf64 +HGNC:27900 C17orf67 chromosome 17 open reading frame 67 protein-coding gene gene with protein product Approved 17q22 17q22 2005-12-16 2016-10-05 339210 ENSG00000214226 OTTHUMG00000132083 uc002iuq.5 BC041467 NM_001085430 CCDS42364 Q0P5P2 12477932 MGI:2685371 RGD:1592433 C17orf67 +HGNC:27315 C17orf74 chromosome 17 open reading frame 74 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 2006-01-12 2016-09-30 201243 ENSG00000184560 OTTHUMG00000178190 uc002ggw.4 BC044816 NM_175734 CCDS42255 Q0P670 12477932 MGI:1918293 RGD:1565061 C17orf74 +HGNC:30173 C17orf75 chromosome 17 open reading frame 75 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "NJMU-R1|SRI2" sensitization to ricin complex subunit 2 2006-01-12 2016-09-30 64149 ENSG00000108666 OTTHUMG00000179585 uc002hhg.4 AB062437 NM_022344 CCDS58537 Q9HAS0 23394947 MGI:1917841 RGD:1310429 C17orf75 +HGNC:26480 C17orf77 chromosome 17 open reading frame 77 other unknown Approved 17q25.1 17q25.1 FLJ31882 2006-01-16 2016-09-30 146723 ENSG00000182352 OTTHUMG00000067611 uc002jla.2 NM_152460 Q96MU5 C17orf77 +HGNC:26831 C17orf78 chromosome 17 open reading frame 78 protein-coding gene gene with protein product Approved 17q12 17q12 FLJ39647 2006-01-24 2016-09-30 284099 ENSG00000278505 OTTHUMG00000188467 uc284otp.1 BC034672 NM_173625 "CCDS45655|CCDS82110" Q8N4C9 14702039 MGI:3650287 RGD:7517962 C17orf78 +HGNC:29601 C17orf80 chromosome 17 open reading frame 80 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "HLC-8|MIG3|FLJ20721|SPEP1" "sperm-expressed protein 1|migration-inducing protein 3" 2006-02-13 2012-02-24 2012-02-24 2016-09-30 55028 ENSG00000141219 OTTHUMG00000178417 uc002jjm.6 AY163812 NM_017941 "CCDS11694|CCDS42377|CCDS45767|CCDS74145" Q9BSJ5 12477932 MGI:106356 RGD:1359207 C17orf80 +HGNC:32699 C17orf82 chromosome 17 open reading frame 82 other unknown Approved 17q23.2 17q23.2 2006-04-24 2016-09-30 388407 ENSG00000187013 OTTHUMG00000180077 uc002izh.2 BC046200 NM_203425 Q86X59 C17orf82 +HGNC:26206 C17orf84 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:34493 C17orf96 chromosome 17 open reading frame 96 protein-coding gene gene with protein product Approved 17q12 17q12 "LOC100170841|PRR28" proline rich 28 2008-08-06 2016-09-30 100170841 ENSG00000273604 OTTHUMG00000188495 uc010wdq.3 NM_001130677 CCDS45661 A6NHQ4 24550272 MGI:2143991 RGD:1587434 +HGNC:33800 C17orf97 chromosome 17 open reading frame 97 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "LOC400566|LIAT1" ligand of ATE1 2008-08-06 2016-09-30 400566 ENSG00000187624 OTTHUMG00000132479 uc021tna.1 "AK128660|BC057385" NM_001013672 CCDS32519 Q6ZQX7 25369936 MGI:1921480 RGD:1565611 C17orf97 +HGNC:34492 C17orf98 chromosome 17 open reading frame 98 protein-coding gene gene with protein product Approved 17q12 17q12 LOC388381 2008-08-06 2016-09-30 388381 ENSG00000275489 OTTHUMG00000188506 uc002hqv.3 "AC006449|DY654789" NM_001080465 CCDS42310 A8MV24 16625196 MGI:1919465 RGD:1587402 C17orf98 +HGNC:34490 C17orf99 chromosome 17 open reading frame 99 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "GLPG464|UNQ464" 2008-08-07 2016-09-30 100141515 ENSG00000187997 OTTHUMG00000153871 uc002jus.5 AY358510 NM_001163075 CCDS54171 Q6UX52 MGI:1924977 RGD:1591144 +HGNC:34494 C17orf100 chromosome 17 open reading frame 100 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 LOC388327 2008-08-12 2016-09-30 388327 ENSG00000279257 OTTHUMG00000188340 uc284ohu.1 "BC028174|BC038956|BC052606" NM_001105520 CCDS73952 A8MU93 MGI:1922554 RGD:6486589 C17orf100 +HGNC:34412 C17orf102 chromosome 17 open reading frame 102 other unknown Approved 17q12 17q12 FLJ44815 2009-01-30 2016-09-30 400591 ENSG00000197322 OTTHUMG00000156883 uc002hie.2 NM_207454 A2RUQ5 RGD:9084586 C17orf102 +HGNC:37241 C17orf105 chromosome 17 open reading frame 105 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 2009-09-09 2016-09-30 284067 ENSG00000231256 OTTHUMG00000180890 uc002ieg.4 NM_001136483 CCDS45695 B2RV13 MGI:1922687 RGD:1565533 C17orf105 +HGNC:37238 C17orf107 chromosome 17 open reading frame 107 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 2009-09-30 2016-09-30 100130311 ENSG00000205710 OTTHUMG00000164838 uc002fzl.4 AK128415 NM_001145536 CCDS45591 Q6ZR85 MGI:2148639 RGD:1597577 C17orf107 +HGNC:42963 C17orf112 chromosome 17 open reading frame 112 other unknown Approved 17q22 17q22 2012-05-16 2016-09-30 100506650 ENSG00000227011 OTTHUMG00000132355 uc021uaf.2 NM_001243552 F2Z3M2 +HGNC:24326 C18orf8 chromosome 18 open reading frame 8 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "MIC1|MIC-1|HsT2591" "colon cancer associated protein Mic1|macrophage inhibitory cytokine 1" 2003-12-30 2016-09-30 29919 ENSG00000141452 OTTHUMG00000179239 uc021uie.3 AK057192 NM_013326 "CCDS32803|CCDS74199|CCDS82243" Q96DM3 12477932 MGI:1916528 RGD:1311805 C18orf8 +HGNC:24918 C18orf12 chromosome 18 open reading frame 12 other unknown Approved 18q21.1 18q21.1 "HEIL1|HsT2508" 2004-01-21 2016-09-30 84322 ENSG00000280197 OTTHUMG00000180217 uc060ozi.1 AB027121 XM_017026109 Q96KH6 +HGNC:26447 C18orf15 chromosome 18 open reading frame 15 other unknown Approved 18p11.21 18p11.21 "FLJ31338|HsT3231" 2004-04-29 2016-09-30 147276 ENSG00000279020 OTTHUMG00000181926 uc060nqi.1 AK055900 Q96N68 14702039 +HGNC:28802 C18orf21 chromosome 18 open reading frame 21 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "PNAS-131|PNAS-124|HsT3108" 2004-05-05 2016-09-30 83608 ENSG00000141428 OTTHUMG00000128531 uc002kzc.4 BC025950 NM_031446 "CCDS11916|CCDS56064|CCDS74212" Q32NC0 12477932 MGI:1915296 RGD:1564673 C18orf21 +HGNC:28172 C18orf25 chromosome 18 open reading frame 25 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "MGC12909|ARKL1|RNF111L1" ARKadia-like 1 2004-05-19 2016-09-30 147339 ENSG00000152242 OTTHUMG00000179190 uc032hdb.2 AL713661 NM_145055 "CCDS42430|CCDS42431" Q96B23 15722956 MGI:2444951 RGD:1308601 C18orf25 +HGNC:31690 C18orf32 chromosome 18 open reading frame 32 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 FLJ23458 2007-08-02 2016-09-30 497661 ENSG00000177576 OTTHUMG00000179688 uc002ldl.4 AK027111 NM_001035005 CCDS32831 Q8TCD1 MGI:3039614 RGD:1562987 C18orf32 +HGNC:31691 C18orf33 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:29311 C18orf41 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-11-25 +HGNC:31727 C18orf50 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:13796 C18orf54 chromosome 18 open reading frame 54 protein-coding gene gene with protein product Approved 18q21.2 18q21.2 "MGC33382|LAS2" lung adenoma susceptibility protein 2 2005-01-04 2016-10-05 162681 ENSG00000166845 OTTHUMG00000132703 uc031rij.3 AK126503 NM_173529 "CCDS11956|CCDS74223" Q8IYD9 MGI:1922045 RGD:1563837 C18orf54 613258 +HGNC:25254 C18orf57 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-15 +HGNC:26362 C18orf61 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-04-30 +HGNC:40037 C18orf63 chromosome 18 open reading frame 63 protein-coding gene gene with protein product Approved 18q22.3 18q22.3 DKFZP781G0119 2011-05-19 2016-09-30 644041 ENSG00000206043 OTTHUMG00000178987 uc002llj.4 NM_001174123 CCDS54189 Q68DL7 MGI:4936900 RGD:2323488 C18orf63 +HGNC:51248 C18orf65 chromosome 18 open reading frame 65 other unknown Approved 18q23 18q23 2014-09-17 2016-09-30 400658 ENSG00000275763 OTTHUMG00000165996 NM_001272093 Q6ZTR6 RGD:9411526 +HGNC:17974 C19orf8 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-11-23 +HGNC:25443 C19orf12 chromosome 19 open reading frame 12 protein-coding gene gene with protein product Approved 19q12 19q12 "MGC10922|DKFZP762D096|NBIA4" neurodegeneration with brain iron accumulation 4 SPG43 spastic paraplegia 43 (autosomal recessive) 2004-02-11 2016-10-05 83636 ENSG00000131943 OTTHUMG00000149838 uc031rkd.1 AK057185 NM_031448 "CCDS12418|CCDS42542|CCDS59373|CCDS74325" Q9NSK7 "21981780|23857908" MGI:1919494 RGD:1585208 C19orf12 614297 289569 +HGNC:28642 C19orf18 chromosome 19 open reading frame 18 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 MGC41906 2004-02-19 2016-09-30 147685 ENSG00000177025 OTTHUMG00000183450 uc002qqv.3 BC033933 NM_152474 CCDS12967 Q8NEA5 12477932 MGI:1920340 RGD:1595996 C19orf18 +HGNC:26073 C19orf24 chromosome 19 open reading frame 24 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ20640 2004-03-16 2016-09-30 55009 ENSG00000228300 OTTHUMG00000153928 uc002lrw.5 BC000890 NM_017914 CCDS12060 Q9BVV8 16847563 MGI:1917020 RGD:1562114 C19orf24 +HGNC:26711 C19orf25 chromosome 19 open reading frame 25 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ36666 2004-03-16 2016-09-30 148223 ENSG00000119559 OTTHUMG00000180092 uc060rbw.1 AK075267 NM_152482 CCDS45898 Q9UFG5 "8619474|9110174" MGI:1913624 RGD:1359127 C19orf25 +HGNC:17573 C19orf31 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:16668 C19orf33 chromosome 19 open reading frame 33 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "IMUP-1|IMUP-2|H2RSP|IMUP" "immortalization-upregulated protein|HAI-2 related small protein|hepatocyte growth factor activator inhibitor type 2-related small protein" 2004-04-28 2016-09-30 64073 ENSG00000167644 OTTHUMG00000181894 uc002ohu.2 AF213678 NM_033520 "CCDS12511|CCDS82344" Q9GZP8 11080599 MGI:1919525 RGD:2319167 C19orf33 +HGNC:24793 C19orf35 chromosome 19 open reading frame 35 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ45778 2004-07-30 2016-09-30 374872 ENSG00000188305 OTTHUMG00000178460 uc002lvn.3 AK127680 NM_198532 CCDS12087 Q6ZS72 C19orf35 +HGNC:34073 C19orf38 chromosome 19 open reading frame 38 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 HIDE1 Highly expressed in immature dendritic cell transcript 1 2008-04-14 2008-04-14 2016-09-30 255809 ENSG00000214212 OTTHUMG00000180697 uc060tmt.1 NM_001136482 CCDS45970 A8MVS5 MGI:3043001 RGD:1587445 C19orf38 +HGNC:28424 C19orf43 chromosome 19 open reading frame 43 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "MGC2803|fSAP18" functional spliceosome-associated protein 18 2006-04-04 2016-10-05 79002 ENSG00000123144 OTTHUMG00000180347 uc002muu.4 AK027588 NM_024038 CCDS12279 Q9BQ61 12477932 MGI:1922833 RGD:1564093 C19orf43 +HGNC:26141 C19orf44 chromosome 19 open reading frame 44 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 FLJ21742 2006-06-19 2016-10-05 84167 ENSG00000105072 OTTHUMG00000182439 uc002neh.3 AK025395 NM_032207 "CCDS12345|CCDS74306" Q9H6X5 12477932 MGI:1919504 RGD:1311847 C19orf44 +HGNC:24745 C19orf45 chromosome 19 open reading frame 45 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ35784 2006-06-21 2016-09-30 374877 ENSG00000198723 OTTHUMG00000157183 uc002mgm.2 BC029824 NM_198534 CCDS12179 Q8NA69 12477932 MGI:1923656 RGD:1563425 C19orf45 +HGNC:26723 C19orf47 chromosome 19 open reading frame 47 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ36888 2006-07-12 2016-09-30 126526 ENSG00000160392 OTTHUMG00000179028 uc002oni.6 AL834131 NM_178830 CCDS58662 Q8N9M1 12477932 MGI:1913617 RGD:1307554 C19orf47 +HGNC:29667 C19orf48 chromosome 19 open reading frame 48 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 MGC13170 multidrug resistance-related protein Minor histocompatibility antigens 870 2006-07-12 2016-09-30 84798 ENSG00000167747 OTTHUMG00000182875 uc002ptg.4 BC037227 NM_032712 CCDS12803 Q6RUI8 "12452007|18698046" MGI:1914226 RGD:1309326 C19orf48 +HGNC:24991 C19orf53 chromosome 19 open reading frame 53 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "HSPC023|LYDG10" leydig cell tumor 10 kDa protein homolog 2006-08-08 2016-10-05 28974 ENSG00000104979 OTTHUMG00000180914 uc002mxg.4 AF078852 NM_014047 CCDS12298 Q9UNZ5 11042152 MGI:1289231 RGD:735128 C19orf53 +HGNC:24758 C19orf54 chromosome 19 open reading frame 54 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ41131 2006-08-08 2016-09-30 284325 ENSG00000188493 OTTHUMG00000150174 uc002oou.1 AK123126 NM_198476 CCDS12564 Q5BKX5 MGI:3041247 RGD:1560854 C19orf54 +HGNC:28153 C19orf57 chromosome 19 open reading frame 57 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 MGC11271 2006-08-21 2016-09-30 79173 ENSG00000132016 OTTHUMG00000181851 uc002mxl.2 BC012945 NM_024323 CCDS12299 Q0VDD7 8228263 MGI:1921916 RGD:1306072 C19orf57 +HGNC:26098 C19orf60 chromosome 19 open reading frame 60 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FLJ20850|FLJ30108|FLJ34606|FLJ37391" 2007-03-14 2016-09-30 55049 ENSG00000006015 OTTHUMG00000183112 uc002njv.5 AK000857 NM_017967 "CCDS42524|CCDS46019" Q96EN9 12477932 MGI:1913712 RGD:1566239 C19orf60 +HGNC:25649 C19orf66 chromosome 19 open reading frame 66 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "FLJ11286|RyDEN" Repressor of yield of Dengue virus 2008-06-12 2016-09-30 55337 ENSG00000130813 OTTHUMG00000180393 uc002mmu.5 NM_018381 "CCDS45957|CCDS77231" Q9NUL5 26735137 MGI:2441788 RGD:1565995 C19orf66 616808 +HGNC:34354 C19orf67 chromosome 19 open reading frame 67 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 2008-07-02 2016-09-30 646457 ENSG00000188032 OTTHUMG00000169303 uc031rjr.2 XM_929382 CCDS59360 A6NJJ6 MGI:1920703 RGD:1586683 C19orf67 +HGNC:34495 C19orf68 chromosome 19 open reading frame 68 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 LOC374920 2008-08-06 2016-10-05 374920 ENSG00000185453 OTTHUMG00000183190 uc032iar.1 BC043386 XM_001713770 CCDS74411 Q86XI8 12477932 MGI:2447816 RGD:1310257 C19orf68 +HGNC:33702 C19orf70 chromosome 19 open reading frame 70 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "QIL1|P117|MIC13" 2008-08-06 2016-09-30 125988 ENSG00000174917 OTTHUMG00000180503 uc002mch.2 BC009557 NM_205767 "CCDS12143|CCDS77221" Q5XKP0 "25997101|27485409" MGI:2442174 RGD:1588578 C19orf70 616658 +HGNC:34496 C19orf71 chromosome 19 open reading frame 71 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 LOC100128569 2008-09-16 2016-09-30 100128569 ENSG00000183397 OTTHUMG00000180764 uc010xhm.3 NM_001135580 CCDS45918 A6NCJ1 MGI:1921072 RGD:1593449 C19orf71 +HGNC:25534 C19orf73 chromosome 19 open reading frame 73 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 FLJ10490 2009-04-06 2016-09-30 55150 ENSG00000221916 OTTHUMG00000183345 uc002pmq.4 AK001352 NM_018111 CCDS42589 Q9NVV2 12477932 C19orf73 +HGNC:40041 C19orf81 chromosome 19 open reading frame 81 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 2011-08-15 2016-09-30 342918 ENSG00000235034 OTTHUMG00000154593 uc021uyf.1 NM_001195076 CCDS54296 C9J6K1 MGI:1916599 RGD:1309036 C19orf81 +HGNC:27112 C19orf84 chromosome 19 open reading frame 84 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 2014-01-02 2016-09-30 147646 ENSG00000262874 OTTHUMG00000177322 "BC043532|BC085012" NM_001193623 CCDS58676 I3L1E1 12477932 MGI:5621884 RGD:9101016 +HGNC:15870 C20orf24 chromosome 20 open reading frame 24 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "PNAS-11|RIP5" 2001-06-21 2016-09-30 55969 ENSG00000101084 OTTHUMG00000032384 uc002xfq.3 AF112213 NM_018840 "CCDS13279|CCDS13280|CCDS56190" Q9BUV8 15178406 MGI:1914638 RGD:1307752 C20orf24 +HGNC:15873 C20orf27 chromosome 20 open reading frame 27 protein-coding gene gene with protein product Approved 20p13 20p13 FLJ20550 hypothetical protein LOC54976 2001-06-21 2016-09-30 54976 ENSG00000101220 OTTHUMG00000031753 uc002wji.3 AK000557 NM_001039140 "CCDS33436|CCDS58763" Q9GZN8 11780052 MGI:1914576 RGD:1311739 C20orf27 +HGNC:16199 C20orf66 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:16210 C20orf78 chromosome 20 open reading frame 78 other unknown Approved 20p11.23 20p11.23 dJ1068E13.1 2001-07-17 2016-09-30 100128496 ENSG00000149443 OTTHUMG00000031982 uc061vrb.1 AL035563 NM_178462 Q9BR46 11780052 C20orf78 +HGNC:16216 C20orf85 chromosome 20 open reading frame 85 protein-coding gene gene with protein product Approved 20q13.32 20q13.32 "bA196N14.1|LLC1" Low in Lung Cancer 1 2001-07-17 2016-09-30 128602 ENSG00000124237 OTTHUMG00000032836 uc002xyv.4 AL354776 NM_178456 CCDS13465 Q9H1P6 MGI:1919471 RGD:1589960 C20orf85 +HGNC:16220 C20orf89 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-27 +HGNC:16227 C20orf96 chromosome 20 open reading frame 96 protein-coding gene gene with protein product Approved 20p13 20p13 dJ1103G7.2 2001-07-17 2016-09-30 140680 ENSG00000196476 OTTHUMG00000031626 uc002wde.3 AL034548 NM_153269 "CCDS12994|CCDS74685" Q9NUD7 MGI:3045333 RGD:1559448 C20orf96 +HGNC:16103 C20orf109 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-11-24 +HGNC:16134 C20orf141 chromosome 20 open reading frame 141 protein-coding gene gene with protein product Approved 20p13 20p13 dJ860F19.4 2001-07-17 2016-09-30 128653 ENSG00000258713 OTTHUMG00000031707 uc002wgw.4 NM_080739 CCDS13034 Q9NUB4 MGI:1922906 RGD:2319030 C20orf141 +HGNC:16137 C20orf144 chromosome 20 open reading frame 144 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "dJ63M2.6|bclt" bcl-2-like protein from testis 2001-07-17 2016-09-30 128864 ENSG00000149609 OTTHUMG00000032263 uc002wzs.3 AL121906 NM_080825 CCDS13223 Q9BQM9 11780052 MGI:1922730 RGD:1561517 C20orf144 +HGNC:26393 C20orf166-AS1 C20orf166 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 FLJ30313 "C20orf200|NCRNA00335" "chromosome 20 open reading frame 200|non-protein coding RNA 335|C20orf166 antisense RNA 1 (non-protein coding)" 2007-07-10 2011-08-10 2012-08-15 2014-11-19 253868 ENSG00000174403 OTTHUMG00000048002 uc002ycy.5 AK054875 NR_033263 Q96NR2 +HGNC:16166 C20orf173 chromosome 20 open reading frame 173 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 dJ477O4.4 2001-07-17 2016-09-30 140873 ENSG00000125975 OTTHUMG00000032340 uc061wmz.1 AL121586 NM_001145350 CCDS46594 Q96LM9 MGI:2443361 RGD:7514905 C20orf173 +HGNC:16174 C20orf181 chromosome 20 open reading frame 181 other unknown Approved 20q13.33 20q13.33 dJ824A14.1 2001-07-17 2016-09-30 100128998 ENSG00000279610 OTTHUMG00000033002 uc061ypy.1 U63828 XR_001754451 +HGNC:16180 C20orf187 chromosome 20 open reading frame 187 other unknown Approved 20p12.2 20p12.2 dJ727I10.1 2001-07-17 2016-09-30 728434 ENSG00000125899 OTTHUMG00000031881 uc061vke.1 AL050322 XR_001754494 Q9UGB4 C20orf187 +HGNC:17721 C20orf194 chromosome 20 open reading frame 194 protein-coding gene gene with protein product Approved 20p13 20p13 DKFZp434N061 2003-01-30 2016-09-30 25943 ENSG00000088854 OTTHUMG00000031742 uc002wii.4 AL110249 NM_001009984 CCDS42851 Q5TEA3 MGI:1923029 RGD:1565616 C20orf194 614146 +HGNC:26318 C20orf196 chromosome 20 open reading frame 196 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 FLJ25067 2006-07-07 2016-09-30 149840 ENSG00000171984 OTTHUMG00000031813 uc002wmf.4 AK057796 NM_152504 "CCDS13091|CCDS77565" Q8IYI0 12477932 MGI:1920997 RGD:1597982 C20orf196 +HGNC:26601 C20orf197 chromosome 20 open reading frame 197 other unknown Approved 20q13.33 20q13.33 FLJ33860 2006-07-07 2016-09-30 284756 ENSG00000176659 OTTHUMG00000032880 uc002ybj.2 AK091179 NM_173644 Q8N268 12975309 C20orf197 +HGNC:37254 C20orf202 chromosome 20 open reading frame 202 protein-coding gene gene with protein product Approved 20p13 20p13 2009-09-10 2016-09-30 400831 ENSG00000215595 OTTHUMG00000129375 uc002wer.4 NM_001009612 CCDS46567 A1L168 MGI:3039588 RGD:2323360 C20orf202 +HGNC:26592 C20orf203 chromosome 20 open reading frame 203 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 FLJ33706 2010-04-01 2016-09-30 284805 ENSG00000198547 OTTHUMG00000032224 uc002wxz.4 AK091025 NM_182584 Q8NBC4 20376170 +HGNC:1260 C21orf2 chromosome 21 open reading frame 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "YF5|A2|LRRC76" "nuclear encoded mitochondrial protein|leucine rich repeat containing 76" 1998-08-06 2016-09-30 755 ENSG00000160226 OTTHUMG00000086909 uc002zep.2 Y11392 NM_004928 "CCDS13709|CCDS59444|CCDS59445" O43822 "9465297|26974433" MGI:1915134 RGD:1309594 C21orf2 603191 +HGNC:1254 C21orf12 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-10-17 +HGNC:1272 C21orf32 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-05-30 +HGNC:1273 C21orf33 chromosome 21 open reading frame 33 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KNP-Ia|GT335|ES1|HES1|D21S2048E|KNPI|KNPH|KNP-I" 2000-05-23 2016-09-30 8209 ENSG00000160221 OTTHUMG00000086916 uc002zec.5 Y07572 NM_004649 "CCDS33580|CCDS33581|CCDS82680" P30042 "9150728|8975701" MGI:1351861 RGD:1303003 C21orf33 601659 +HGNC:1281 C21orf40 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-10-17 +HGNC:1295 C21orf53 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-07-25 +HGNC:1300 C21orf58 chromosome 21 open reading frame 58 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 2000-05-23 2016-09-30 54058 ENSG00000160298 OTTHUMG00000090634 uc002zjf.5 NM_058180 "CCDS13735|CCDS68229" P58505 MGI:1924214 RGD:1564149 C21orf58 +HGNC:1301 C21orf59 chromosome 21 open reading frame 59 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "FLJ20467|FBB18|CILD26|Kur" kurly homolog (zebrafish) C21orf48 chromosome 21 open reading frame 48 2000-06-28 2003-07-22 2016-09-30 56683 ENSG00000159079 OTTHUMG00000179510 uc002yqc.4 AF282851 NM_021254 CCDS13617 P57076 "24094744|26904945" MGI:1915251 RGD:1306954 C21orf59 615494 367619 +HGNC:1305 C21orf62 chromosome 21 open reading frame 62 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "B37|PRED81" C21orf120 chromosome 21 open reading frame 120 2000-08-22 2016-10-05 56245 ENSG00000205929 OTTHUMG00000163477 uc011adt.3 AF231922 NM_019596 CCDS42919 Q9NYP8 MGI:1921637 RGD:1562726 C21orf62 +HGNC:1290 C21orf62-AS1 C21orf62 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 C21orf49 chromosome 21 open reading frame 49 2000-05-23 2014-10-01 2014-10-01 2014-10-01 54067 ENSG00000205930 OTTHUMG00000064992 NR_024622 Q17RA5 +HGNC:16026 C21orf72 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-10-17 +HGNC:16340 C21orf79 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-01-22 +HGNC:16459 C21orf91 chromosome 21 open reading frame 91 protein-coding gene gene with protein product Approved 21q21.1 21q21.1 "YG81|EURL|CSSG1" "cold sore susceptibility gene 1|early undifferentiated retina and lens" "C21orf38|C21orf14" chromosome 21 open reading frame 38 2001-08-24 2003-07-22 2016-09-30 54149 ENSG00000154642 OTTHUMG00000074509 uc002yko.4 AF239726 NM_017447 "CCDS42907|CCDS42908|CCDS42909" Q9NYK6 22039568 MGI:1196400 RGD:1563888 C21orf91 +HGNC:16729 C21orf91-OT1 C21orf91 overlapping transcript 1 non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 D21S2089E NCRNA00285 "non-protein coding RNA 285|C21orf91 overlapping transcript 1 (non-protein coding)" 2010-08-16 2011-08-19 2014-06-02 2014-11-19 246312 ENSG00000240770 OTTHUMG00000074506 uc061zej.1 "AY063452|AY063453" NR_038870 12036297 +HGNC:19726 C21orf114 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-22 +HGNC:17285 C21orf116 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-12-07 +HGNC:23127 C21orf118 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-05-30 +HGNC:39602 C21orf140 chromosome 21 open reading frame 140 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 2013-11-05 2016-10-05 101928147 ENSG00000222018 OTTHUMG00000154291 NM_001282537 CCDS63357 B9A014 MGI:1922578 RGD:1560327 +HGNC:15558 C22orf15 chromosome 22 open reading frame 15 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "FLJ36561|N27C7-3" 2004-06-24 2016-09-30 150248 ENSG00000169314 OTTHUMG00000150740 uc011aja.3 AB050773 NM_182520 "CCDS13814|CCDS82698" Q8WYQ4 MGI:2685713 RGD:1564162 C22orf15 +HGNC:18589 C22orf23 chromosome 22 open reading frame 23 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "FLJ32787|EVG1|LOC84645" 2002-04-30 2016-09-30 84645 ENSG00000128346 OTTHUMG00000150672 uc003auj.3 AF324466 NM_032561 "CCDS13962|CCDS74860" Q9BZE7 11237012 MGI:1920774 RGD:1359634 C22orf23 +HGNC:23051 C22orf24 chromosome 22 open reading frame 24 other unknown Approved 22q12.3 22q12.3 HSN44A4A 2004-05-05 2016-10-05 25775 ENSG00000128254 OTTHUMG00000030834 uc003aly.4 NM_015372 Q9Y442 C22orf24 +HGNC:26112 C22orf29 chromosome 22 open reading frame 29 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "FLJ21125|BOP" BH3-only protein BCL2 homology region 3 (BH3) only 1277 2006-07-05 2016-09-30 79680 ENSG00000215012 OTTHUMG00000030314 uc002zqi.4 BX640998 NM_024627 CCDS13769 Q7L3V2 "12477932|23055042" MGI:3833934 RGD:7676248 C22orf29 +HGNC:26931 C22orf31 chromosome 22 open reading frame 31 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 "HS747E2A|bK747E2.1" 2006-07-05 2016-09-30 25770 ENSG00000100249 OTTHUMG00000151011 uc003aej.2 AL035364 NM_015370 CCDS13848 O95567 15461802 RGD:7675909 C22orf31 +HGNC:28010 C22orf34 chromosome 22 open reading frame 34 other unknown Approved 22q13.33 22q13.33 2006-07-06 2016-09-30 348645 ENSG00000188511 OTTHUMG00000030424 uc003biq.4 BC048207 NR_026997 Q6ZV56 12477932 C22orf34 +HGNC:27012 C22orf39 chromosome 22 open reading frame 39 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 MGC74441 2007-12-06 2016-09-30 128977 ENSG00000242259 OTTHUMG00000150137 uc062blt.1 NM_173793 "CCDS33599|CCDS54498" Q6P5X5 MGI:1919557 RGD:1595717 C22orf39 +HGNC:27160 C22orf42 chromosome 22 open reading frame 42 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 2009-03-05 2016-09-30 150297 ENSG00000205856 OTTHUMG00000030380 uc003amd.4 BC040263 NM_001010859 CCDS33639 Q6IC83 12477932 C22orf42 +HGNC:26294 C22orf46 chromosome 22 open reading frame 46 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "FLJ23584|CTA-216E10.6" 2009-10-02 2016-09-30 79640 ENSG00000184208 OTTHUMG00000151188 uc003bax.1 BC007210 NM_024588 CCDS46717 C9J442 12477932 MGI:2685593 RGD:2318773 C22orf46 +HGNC:1368 CA1 carbonic anhydrase 1 protein-coding gene gene with protein product Approved 8q21.2 08q21.2 Car1 carbonic anhydrase I Carbonic anhydrases 460 1986-01-01 2016-03-18 2016-03-18 759 ENSG00000133742 OTTHUMG00000164941 uc003ydh.4 M33987 NM_001738 CCDS6237 P00915 1916821 MGI:88268 RGD:1309780 CA1 114800 objectId:2597 4.2.1.1 +HGNC:1373 CA2 carbonic anhydrase 2 protein-coding gene gene with protein product Approved 8q21.2 08q21.2 "Car2|CA-II|CAII" carbonic anhydrase II Carbonic anhydrases 460 2001-06-22 2016-03-18 2016-05-06 760 ENSG00000104267 OTTHUMG00000164944 uc003ydk.3 J03037 NM_000067 CCDS6239 P00918 3107918 MGI:88269 RGD:2240 CA2 611492 119117 4.2.1.1 +HGNC:1374 CA3 carbonic anhydrase 3 protein-coding gene gene with protein product Approved 8q21.2 08q21.2 "Car3|CAIII" "carbonic anhydrase III, muscle specific|carbonic anhydrase III" Carbonic anhydrases 460 2001-06-22 2016-03-18 2016-03-18 761 ENSG00000164879 OTTHUMG00000164942 uc003ydj.4 AJ006473 NM_005181 CCDS6238 P07451 6221502 MGI:88270 RGD:2241 CA3 114750 4.2.1.1 +HGNC:51657 CA3-AS1 CA3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q21.2 08q21.2 2015-04-24 2015-04-24 100996348 ENSG00000253549 OTTHUMG00000164943 NR_121630 +HGNC:1375 CA4 carbonic anhydrase 4 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "CAIV|Car4" RP17 "retinitis pigmentosa 17 (autosomal dominant)|carbonic anhydrase IV" Carbonic anhydrases 460 1992-04-07 2016-03-18 2016-03-18 762 ENSG00000167434 OTTHUMG00000179987 uc002iym.5 L10955 NM_000717 CCDS11624 P22748 8325641 MGI:1096574 RGD:2242 CA4 114760 119122 objectId:2599 4.2.1.1 +HGNC:1377 CA5A carbonic anhydrase 5A protein-coding gene gene with protein product Approved 16q24.2 16q24.2 "CAV|CAVA" CA5 carbonic anhydrase VA, mitochondrial Carbonic anhydrases 460 1993-10-15 2016-03-18 2016-03-18 763 ENSG00000174990 OTTHUMG00000137677 uc002fkn.2 L19297 NM_001739 CCDS10965 P35218 "8356065|7490083" MGI:101946 RGD:2243 CA5A 114761 404144 4.2.1.1 +HGNC:1379 CA5AP1 carbonic anhydrase 5A pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 CA5P "carbonic anhydrase V pseudogene|carbonic anhydrase VA pseudogene 1" 1995-09-20 2012-08-21 2016-03-18 2016-03-18 764 ENSG00000260133 OTTHUMG00000176772 NG_027849 7490083 PGOHUM00000248796 +HGNC:1378 CA5B carbonic anhydrase 5B protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 carbonic anhydrase VB, mitochondrial Carbonic anhydrases 460 1999-09-16 2016-03-18 2016-10-05 11238 ENSG00000169239 OTTHUMG00000021183 uc004cxe.4 AB021660 NM_007220 CCDS14171 Q9Y2D0 10409679 MGI:1926249 RGD:1549783 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CA5B CA5B 300230 +HGNC:40115 CA5B-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:29544 CA5BP1 carbonic anhydrase 5B pseudogene 1 pseudogene pseudogene Approved Xp22.2 Xp22.2 PRO2325 "similar to carbonic anhydrase VB, mitochondrial precursor|carbonic dehydratase" "CA5BL|CA5BP" "carbonic anhydrase VB-like|carbonic anhydrase VB pseudogene|carbonic anhydrase VB pseudogene 1" 2004-08-09 2011-02-07 2016-03-18 2016-03-18 340591 ENSG00000186312 OTTHUMG00000021182 BC021816 NR_026551 Q8WTZ4 12477932 CA5BP1 PGOHUM00000250066 +HGNC:1380 CA6 carbonic anhydrase 6 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 carbonic anhydrase VI Carbonic anhydrases 460 1990-09-10 2016-03-18 2016-10-05 765 ENSG00000131686 OTTHUMG00000001763 uc001apm.5 M57892 XM_011542083 "CCDS30578|CCDS57970|CCDS57971" P23280 9691177 MGI:1333786 RGD:70516 CA6 114780 4.2.1.1 +HGNC:1381 CA7 carbonic anhydrase 7 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 carbonic anhydrase VII Carbonic anhydrases 460 1988-05-11 2016-03-18 2016-03-18 766 ENSG00000168748 OTTHUMG00000137524 uc002eqi.4 XM_005256136 "CCDS10821|CCDS42173" P43166 1783392 MGI:103100 RGD:1306842 CA7 114770 objectId:2749 4.2.1.1 +HGNC:1382 CA8 carbonic anhydrase 8 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 CARP CALS carbonic anhydrase VIII Carbonic anhydrases 460 1993-07-08 2016-03-18 2016-03-18 767 ENSG00000178538 OTTHUMG00000165325 uc003xtz.2 L04656 NM_004056 CCDS6174 P35219 17219437 MGI:88253 RGD:1304709 CA8 114815 327290 +HGNC:1383 CA9 carbonic anhydrase 9 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "MN|CAIX" "carbonic dehydratase|RCC-associated protein G250" carbonic anhydrase IX Carbonic anhydrases 460 1998-04-29 2016-03-18 2016-03-18 768 ENSG00000107159 OTTHUMG00000021029 uc003zxo.5 X66839 NM_001216 CCDS6585 Q16790 "8661007|9787087" MGI:2447188 RGD:1306426 CA9 603179 +HGNC:1369 CA10 carbonic anhydrase 10 protein-coding gene gene with protein product Approved 17q21.33-q22 17q21.33-q22 "CARPX|CA-RPX|HUCEP-15" carbonic anhydrase X Carbonic anhydrases 460 1998-07-17 2016-03-18 2016-10-11 56934 ENSG00000154975 OTTHUMG00000177544 uc002ity.4 AF288385 NM_020178 CCDS32684 Q9NS85 "8673298|9921901" MGI:1919855 RGD:2322930 CA10 604642 +HGNC:1370 CA11 carbonic anhydrase 11 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "CARP2|CARPX1" "CA-RP XI|carbonic anhydrase-related protein XI|carbonic anhydrase-related protein 2" carbonic anhydrase XI Carbonic anhydrases 460 1998-07-17 2016-03-18 2016-03-18 770 ENSG00000063180 OTTHUMG00000183320 uc002pjz.2 AF067662 NM_001217 CCDS12729 O75493 9878252 MGI:1336193 RGD:735155 CA11 604644 +HGNC:1371 CA12 carbonic anhydrase 12 protein-coding gene gene with protein product Approved 15q22.2 15q22.2 HsT18816 carbonic anhydrase XII Carbonic anhydrases 460 1998-07-17 2016-03-18 2016-10-05 771 ENSG00000074410 OTTHUMG00000132881 uc002amc.4 AF051882 NM_001218 "CCDS10185|CCDS10186|CCDS76767" O43570 9636197 MGI:1923709 RGD:1306612 CA12 603263 objectId:2747 +HGNC:14914 CA13 carbonic anhydrase 13 protein-coding gene gene with protein product Approved 8q21.2 08q21.2 "CAXIII|FLJ37995|MGC59868" carbonic anhydrase XIII Carbonic anhydrases 460 2004-04-28 2016-03-18 2016-03-18 377677 ENSG00000185015 OTTHUMG00000164940 uc003ydg.3 BC052602 NM_198584 CCDS6236 Q8N1Q1 14600151 MGI:1931322 RGD:1560453 CA13 611436 objectId:2748 +HGNC:1372 CA14 carbonic anhydrase 14 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 carbonic anhydrase XIV Carbonic anhydrases 460 1999-11-16 2016-03-18 2016-10-05 23632 ENSG00000118298 OTTHUMG00000012549 uc001etx.5 AB025904 NM_012113 CCDS947 Q9ULX7 10512682 MGI:1344341 RGD:1599277 CA14 604832 objectId:2598 +HGNC:44364 CA15P1 carbonic anhydrase 15 pseudogene 1 pseudogene pseudogene Approved 22q11.21 22q11.21 carbonic anhydrase XV, pseudogene 1 Carbonic anhydrases 460 2012-08-21 2016-03-18 2016-03-18 100996435 ENSG00000241527 OTTHUMG00000157581 16083424 +HGNC:14916 CA15P2 carbonic anhydrase 15 pseudogene 2 pseudogene pseudogene Approved 22q11.21 22q11.21 carbonic anhydrase XV, pseudogene 2 Carbonic anhydrases 460 2012-08-21 2016-03-18 2016-03-18 440795 ENSG00000273907 OTTHUMG00000188357 NG_029357 16083424 +HGNC:44363 CA15P3 carbonic anhydrase 15 pseudogene 3 pseudogene pseudogene Approved 22q11.21 22q11.21 carbonic anhydrase XV, pseudogene 3 Carbonic anhydrases 460 2012-08-21 2016-03-18 2016-03-18 100996556 16083424 +HGNC:25834 CAAP1 caspase activity and apoptosis inhibitor 1 protein-coding gene gene with protein product Approved 9p21.2 09p21.2 "FLJ13657|CAAP" conserved anti-apoptotic protein C9orf82 chromosome 9 open reading frame 82 2004-01-29 2012-04-20 2012-04-20 2014-11-19 79886 ENSG00000120159 OTTHUMG00000019706 uc003zqc.4 BC014658 NM_024828 "CCDS6516|CCDS55299" Q9H8G2 21980415 MGI:1915020 RGD:1560251 +HGNC:20292 CAB39 calcium binding protein 39 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "CGI-66|MO25" 2004-07-02 2015-08-26 51719 ENSG00000135932 OTTHUMG00000133220 uc002vqx.4 AF113536 NM_016289 CCDS2478 Q9Y376 MGI:107438 RGD:1306390 CAB39 612174 +HGNC:20290 CAB39L calcium binding protein 39 like protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "bA103J18.3|FLJ12577|MO2L" calcium binding protein 39-like 2004-04-16 2015-11-30 2016-10-05 81617 ENSG00000102547 OTTHUMG00000016914 uc001vcx.5 AK022639 NM_030925 CCDS9416 Q9H9S4 MGI:1914081 RGD:1308945 CAB39L 612175 +HGNC:51641 CAB39P1 calcium binding protein 39 pseudogene 1 pseudogene pseudogene Approved 5q12.1 05q12.1 2015-04-08 2015-04-08 106481732 ENSG00000251303 OTTHUMG00000162415 NG_043473 PGOHUM00000300967 +HGNC:24187 CABIN1 calcineurin binding protein 1 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "KIAA0330|PPP3IN" 2008-09-16 2014-11-18 23523 ENSG00000099991 OTTHUMG00000150797 uc002zzi.1 AF072441 NM_012295 "CCDS13823|CCDS74830" Q9Y6J0 "9655484|9205841" MGI:1298375 RGD:620263 CABIN1 604251 +HGNC:25097 CABLES1 Cdk5 and Abl enzyme substrate 1 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "HsT2563|FLJ35924" 2004-01-09 2016-01-14 91768 ENSG00000134508 OTTHUMG00000179186 uc002kuc.3 BC037218 NM_138375 "CCDS42417|CCDS42418|CCDS58615" Q8TDN4 17982127 MGI:1927065 RGD:1305516 CABLES1 609194 +HGNC:28686 CABLES1L entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:16143 CABLES2 Cdk5 and Abl enzyme substrate 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "dJ908M14.2|ik3-2" C20orf150 chromosome 20 open reading frame 150 2001-07-17 2004-01-09 2004-01-09 2015-08-26 81928 ENSG00000149679 OTTHUMG00000032912 uc002ycv.3 BC003122 XM_037265 CCDS33503 Q9BTV7 12477932 MGI:2182335 RGD:1310089 CABLES2 +HGNC:1384 CABP1 calcium binding protein 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "calbrain|caldendrin" EF-hand domain containing 863 2000-08-31 2007-03-12 2015-08-26 9478 ENSG00000157782 OTTHUMG00000156794 uc001tyv.5 AF169148 NM_001033677 "CCDS9204|CCDS9205|CCDS31913" Q9NZU7 "9920909|10625670" MGI:1352750 RGD:620385 CABP1 605563 +HGNC:1385 CABP2 calcium binding protein 2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 EF-hand domain containing 863 2000-07-28 2016-10-05 51475 ENSG00000167791 OTTHUMG00000168014 uc058eil.1 AF169154 NM_016366 CCDS8170 Q9NPB3 10625670 MGI:1352749 RGD:1563670 CABP2 607314 316377 +HGNC:1386 CABP4 calcium binding protein 4 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 CSNB2B EF-hand domain containing 863 2000-08-31 2015-08-26 57010 ENSG00000175544 OTTHUMG00000168033 uc001olo.4 AC005849 XM_011545181 "CCDS8166|CCDS73333" P57796 "10625670|16960802" MGI:1920910 RGD:1306083 CABP4 608965 119127 +HGNC:13714 CABP5 calcium binding protein 5 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 CaBP3 CABP3 calcium binding protein 3 EF-hand domain containing 863 2000-10-18 2015-08-26 56344 ENSG00000105507 OTTHUMG00000183139 uc002phu.3 AF169159 NM_019855 CCDS12709 Q9NP86 10625670 MGI:1352746 RGD:1308108 CABP5 607315 +HGNC:20834 CABP7 calcium binding protein 7 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 MGC57793 EF-hand domain containing 863 2003-09-25 2015-08-26 164633 ENSG00000100314 OTTHUMG00000151282 uc003agl.4 BC051805 NM_182527 CCDS13867 Q86V35 11785943 MGI:2183437 RGD:1359269 CABP7 +HGNC:30710 CABS1 calcium binding protein, spermatid associated 1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "NYD-SP26|FLJ32897|CLPH" casein-like phosphoprotein C4orf35 "chromosome 4 open reading frame 35|calcium-binding protein, spermatid-specific 1" 2006-08-29 2011-01-25 2016-02-29 2016-02-29 85438 ENSG00000145309 OTTHUMG00000129405 uc003hff.4 AF380838 NM_033122 CCDS3539 Q96KC9 "19208547|19271754" MGI:1918227 RGD:620592 CABS1 +HGNC:15569 CABYR calcium binding tyrosine phosphorylation regulated protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "FSP-2|CBP86|CT88" "fibrousheathin 2|cancer/testis antigen 88" calcium binding tyrosine-(Y)-phosphorylation regulated 2001-05-31 2016-02-12 2016-02-12 26256 ENSG00000154040 OTTHUMG00000037365 uc060nzz.1 AF088868 NM_153770 "CCDS11881|CCDS11882|CCDS11883|CCDS42420|CCDS45840|CCDS77166" O75952 "11820818|17317841|16139264" MGI:1918382 RGD:1585413 CABYR 612135 +HGNC:31902 CABYRP1 calcium binding tyrosine phosphorylation regulated pseudogene 1 pseudogene pseudogene Approved 3p21.1 03p21.1 CABYRP "calcium binding tyrosine-(Y)-phosphorylation regulated pseudogene|calcium binding tyrosine-(Y)-phosphorylation regulated pseudogene 1" 2005-01-26 2010-03-02 2016-02-12 2016-02-12 266954 ENSG00000242983 OTTHUMG00000158459 NG_002394 PGOHUM00000237632 +HGNC:1387 CACD central areolar choroidal dystrophy phenotype phenotype only Approved 17p13 17p13 1997-02-27 1999-04-28 772 "8733141|9733038" 215500 +HGNC:1365 CACFD1 calcium channel flower domain containing 1 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "D9S2135|flower" C9orf7 chromosome 9 open reading frame 7 1999-08-23 2012-03-06 2012-03-06 2016-10-05 11094 ENSG00000160325 OTTHUMG00000020875 uc011mdg.2 NM_017586 "CCDS6974|CCDS48051|CCDS56591|CCDS56592" Q9UGQ2 19737521 MGI:1924317 RGD:1311501 CACFD1 613104 +HGNC:29314 CACHD1 cache domain containing 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 KIAA1573 VWCD1 von Willebrand factor type A and cache domain containing 1 2005-07-13 2005-10-11 2005-10-11 2014-11-19 57685 ENSG00000158966 OTTHUMG00000009030 uc001dbo.2 AB046793 NM_020925 CCDS628 Q5VU97 10997877 MGI:2444177 RGD:1310770 CACHD1 +HGNC:1388 CACNA1A calcium voltage-gated channel subunit alpha1 A protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "Cav2.1|EA2|APCA|HPCA|FHM" "CACNL1A4|SCA6|MHP1|MHP" calcium channel, voltage-dependent, P/Q type, alpha 1A subunit Calcium voltage-gated channel subunits 253 1996-06-18 2016-02-04 2016-10-12 773 ENSG00000141837 OTTHUMG00000044590 uc002mwy.5 U79666 NM_000068 "CCDS45998|CCDS45999|CCDS82300|CCDS82301|CCDS82302" O00555 "8825650|16382099|23827678" MGI:109482 RGD:2244 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=CACNA1A|Familial Hemiplegic Migraine (FHM) Variation Database|http://grenada.lumc.nl/LOVD2/FHM/home.php?select_db=CACNA1A|LRG_7|http://www.lrg-sequence.org/LRG/LRG_7" CACNA1A 601011 119129 objectId:532 +HGNC:1389 CACNA1B calcium voltage-gated channel subunit alpha1 B protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "Cav2.2|CACNN" CACNL1A5 calcium channel, voltage-dependent, N type, alpha 1B subunit "Calcium voltage-gated channel subunits|EF-hand domain containing" "253|863" 1995-06-01 2016-02-04 2016-10-05 774 ENSG00000148408 OTTHUMG00000021002 uc064xnz.1 AB209467 NM_000718 "CCDS59522|CCDS59523" Q00975 "8825650|16382099" MGI:88296 RGD:628852 CACNA1B 601012 objectId:533 +HGNC:1390 CACNA1C calcium voltage-gated channel subunit alpha1 C protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "Cav1.2|CACH2|CACN2|TS|LQT8" "CCHL1A1|CACNL1A1" calcium channel, voltage-dependent, L type, alpha 1C subunit Calcium voltage-gated channel subunits 253 1991-01-30 2016-02-04 2016-10-12 775 ENSG00000151067 OTTHUMG00000150243 uc001qkl.3 AF070589 NM_000719 "CCDS44787|CCDS44788|CCDS44789|CCDS44790|CCDS44791|CCDS44792|CCDS44793|CCDS44794|CCDS44795|CCDS44796|CCDS44797|CCDS44798|CCDS44799|CCDS44800|CCDS44801|CCDS53733|CCDS53734|CCDS53735|CCDS53736" Q13936 "1650913|16382099" MGI:103013 RGD:2245 "Gene Connection for the Heart|http://www.fsm.it/cardmoc/|CACNA1C database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=CACNA1C|LRG_334|http://www.lrg-sequence.org/LRG/LRG_334" CACNA1C 114205 119140 objectId:529 +HGNC:40119 CACNA1C-AS1 CACNA1C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 CACNA1C antisense RNA 1 (non-protein coding) 2011-05-31 2012-08-15 2014-11-19 100652846 ENSG00000246627 OTTHUMG00000168139 uc001qkx.3 NR_045725 +HGNC:40118 CACNA1C-AS2 CACNA1C antisense RNA 2 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 CACNA1C antisense RNA 2 (non-protein coding) 2011-05-31 2012-08-15 2014-11-19 100874235 ENSG00000256271 OTTHUMG00000168138 uc058juv.1 NR_046579 +HGNC:40117 CACNA1C-AS3 CACNA1C antisense RNA 3 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 CACNA1C antisense RNA 3 (non-protein coding) 2011-05-31 2012-08-15 2014-11-19 106478964 ENSG00000256769 OTTHUMG00000168137 uc058juq.1 +HGNC:40116 CACNA1C-AS4 CACNA1C antisense RNA 4 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 CACNA1C antisense RNA 4 (non-protein coding) 2011-05-31 2012-08-15 2014-11-19 100874234 ENSG00000256025 OTTHUMG00000168136 uc031qfm.2 NR_046578 +HGNC:41312 CACNA1C-IT1 CACNA1C intronic transcript 1 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 CACNA1C intronic transcript 1 (non-protein coding) 2011-05-31 2015-02-25 2015-02-25 100874368 ENSG00000256837 OTTHUMG00000168337 uc058jud.1 +HGNC:41313 CACNA1C-IT2 CACNA1C intronic transcript 2 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 CACNA1C intronic transcript 2 (non-protein coding) 2011-05-31 2015-02-25 2015-02-25 100874369 ENSG00000256257 OTTHUMG00000168338 uc058jue.1 NR_046768 +HGNC:41314 CACNA1C-IT3 CACNA1C intronic transcript 3 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 CACNA1C intronic transcript 3 (non-protein coding) 2011-05-31 2015-02-25 2015-02-25 100874370 ENSG00000256721 OTTHUMG00000168201 uc031qfn.2 NR_046769 +HGNC:1391 CACNA1D calcium voltage-gated channel subunit alpha1 D protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "Cav1.3|CACH3|CACN4" "CCHL1A2|CACNL1A2" calcium channel, voltage-dependent, L type, alpha 1D subunit Calcium voltage-gated channel subunits 253 1991-12-12 2016-02-04 2016-10-05 776 ENSG00000157388 OTTHUMG00000158278 uc003dgu.6 AB209171 NM_000720 "CCDS2872|CCDS46848|CCDS46849" Q01668 1664412 MGI:88293 RGD:70973 CACNA1D 114206 327310 objectId:530 +HGNC:1392 CACNA1E calcium voltage-gated channel subunit alpha1 E protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "Cav2.3|BII|CACH6" CACNL1A6 "calcium channel, voltage-dependent, R type, alpha 1E subunit|calcium voltage-gated channel subunit alpha1 subunit E" "Calcium voltage-gated channel subunits|EF-hand domain containing" "253|863" 1994-12-20 2016-02-04 2016-02-04 777 ENSG00000198216 OTTHUMG00000037301 uc001gow.5 AK096563 NM_000721 "CCDS53443|CCDS55664|CCDS55665" Q15878 "8388125|16382099" MGI:106217 RGD:2246 CACNA1E 601013 objectId:534 +HGNC:1393 CACNA1F calcium voltage-gated channel subunit alpha1 F protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "Cav1.4|JM8|JMC8|CSNBX2|CORDX3|CSNB2A|OA2" "CSNB2|AIED" "Aland island eye disease (Forsius-Eriksson ocular albinism, ocular albinism type 2)|calcium channel, voltage-dependent, L type, alpha 1F subunit" Calcium voltage-gated channel subunits 253 1997-04-21 2016-02-04 2016-02-04 778 ENSG00000102001 OTTHUMG00000022703 uc004dnb.3 AA019975 NM_005183 "CCDS35253|CCDS59166|CCDS59167" O60840 "9344658|9662400|16382099|12111638|17525176" MGI:1859639 RGD:621535 "Mutations of the L-type Calcium-Channel Gene|http://www.retina-international.org/files/sci-news/cacnamut.htm|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CACNA1F" CACNA1F 300110 119148 objectId:531 +HGNC:1394 CACNA1G calcium voltage-gated channel subunit alpha1 G protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "Cav3.1|NBR13" calcium channel, voltage-dependent, T type, alpha 1G subunit Calcium voltage-gated channel subunits 253 1999-01-08 2016-02-04 2016-10-05 8913 ENSG00000006283 OTTHUMG00000162180 uc002irk.3 AC004590 NM_018896 "CCDS45730|CCDS45731|CCDS45732|CCDS45733|CCDS45734|CCDS45735|CCDS45736|CCDS45737|CCDS54142|CCDS54143|CCDS54144|CCDS54145|CCDS54146|CCDS58565|CCDS58566|CCDS58567|CCDS58568|CCDS58569|CCDS58570|CCDS58571|CCDS58572|CCDS58573|CCDS58574|CCDS58575|CCDS58576" O43497 "9495342|16382099" MGI:1201678 RGD:68942 CACNA1G 604065 460876 objectId:535 +HGNC:27377 CACNA1G-AS1 CACNA1G antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.33 17q21.33 CACNA1G antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2015-11-04 253962 ENSG00000250107 OTTHUMG00000162163 uc002irh.3 NR_038439 26397149 +HGNC:1395 CACNA1H calcium voltage-gated channel subunit alpha1 H protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Cav3.2 calcium channel, voltage-dependent, T type, alpha 1H subunit Calcium voltage-gated channel subunits 253 1999-01-08 2016-02-04 2016-02-04 8912 ENSG00000196557 OTTHUMG00000172992 uc002cks.4 AL031703 NM_001005407 "CCDS45375|CCDS45376" O95180 "9670923|16382099" MGI:1928842 RGD:68943 CACNA1H 607904 286549 objectId:536 +HGNC:1396 CACNA1I calcium voltage-gated channel subunit alpha1 I protein-coding gene gene with protein product Approved 22q13.1 22q13.1 Cav3.3 calcium channel, voltage-dependent, T type, alpha 1I subunit Calcium voltage-gated channel subunits 253 1999-01-08 2016-02-04 2016-02-04 8911 ENSG00000100346 OTTHUMG00000151096 uc003ayc.5 AF129133 NM_001003406 "CCDS46710|CCDS46711" Q9P0X4 "10454147|16382099" MGI:2178051 RGD:68944 CACNA1I 608230 objectId:537 +HGNC:1397 CACNA1S calcium voltage-gated channel subunit alpha1 S protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "Cav1.1|hypoPP" "HOKPP|MHS5|CACNL1A3" calcium channel, voltage-dependent, L type, alpha 1S subunit Calcium voltage-gated channel subunits 253 1992-03-27 2016-02-04 2016-10-05 779 ENSG00000081248 OTTHUMG00000035784 uc001gvv.4 L33798 NM_000069 CCDS1407 Q13698 "7916735|16382099" MGI:88294 RGD:70983 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=CACNA1S CACNA1S 114208 119157 objectId:528 +HGNC:1399 CACNA2D1 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding gene gene with protein product Approved 7q21.11 07q21.11 lncRNA-N3 "CACNL2A|CACNA2|MHS3|LINC01112" "long intergenic non-protein coding RNA 1112|calcium channel, voltage-dependent, alpha 2/delta subunit 1" Calcium voltage-gated channel subunits 253 1992-03-27 2016-02-04 2016-10-12 781 ENSG00000153956 OTTHUMG00000023622 uc003uhr.2 M76559 XM_006716118 "CCDS5598|CCDS78253" P54289 8188232 MGI:88295 RGD:2247 LRG_437|http://www.lrg-sequence.org/LRG/LRG_437 CACNA2D1 114204 300208 +HGNC:1400 CACNA2D2 calcium voltage-gated channel auxiliary subunit alpha2delta 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 KIAA0558 gene 26 calcium channel, voltage-dependent, alpha 2/delta subunit 2 Calcium voltage-gated channel subunits 253 1999-06-11 2016-02-04 2016-10-05 9254 ENSG00000007402 OTTHUMG00000156887 uc003daq.4 AF040709 NM_006030 "CCDS33763|CCDS54588|CCDS63647|CCDS77748" Q9NY47 MGI:1929813 RGD:631360 CACNA2D2 607082 +HGNC:15460 CACNA2D3 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding gene gene with protein product Approved 3p21.1-p14.3 03p21.1-p14.3 HSA272268 calcium channel, voltage-dependent, alpha 2/delta subunit 3 Calcium voltage-gated channel subunits 253 2001-07-03 2016-02-04 2016-10-11 55799 ENSG00000157445 OTTHUMG00000158580 uc003dhf.3 AJ272268 XM_005265318 CCDS54598 Q8IZS8 11245980 MGI:1338890 RGD:631361 CACNA2D3 606399 +HGNC:40702 CACNA2D3-AS1 CACNA2D3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.3 03p14.3 CACNA2D3 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874237 ENSG00000243715 OTTHUMG00000158579 uc003dhk.1 NR_046666 +HGNC:20202 CACNA2D4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 calcium channel, voltage-dependent, alpha 2/delta subunit 4 Calcium voltage-gated channel subunits 253 2003-01-06 2016-02-04 2016-02-04 93589 ENSG00000151062 OTTHUMG00000168111 uc058jsm.1 AF516695 XM_011521041 CCDS44785 Q7Z3S7 12181424 MGI:2442632 RGD:1562038 CACNA2D4 608171 160128 +HGNC:1401 CACNB1 calcium voltage-gated channel auxiliary subunit beta 1 protein-coding gene gene with protein product Approved 17q12 17q12 CACNLB1 calcium channel, voltage-dependent, beta 1 subunit "Calcium voltage-gated channel subunits|Membrane associated guanylate kinases" "253|904" 1992-03-27 2016-02-04 2016-02-04 782 ENSG00000067191 OTTHUMG00000133217 uc002hrm.2 XM_017025024 "CCDS11334|CCDS42311|CCDS45665" Q02641 "8381767|8395940" MGI:102522 RGD:68382 CACNB1 114207 +HGNC:1402 CACNB2 calcium voltage-gated channel auxiliary subunit beta 2 protein-coding gene gene with protein product Approved 10p12 10p12 "MYSB|CACNLB2" calcium channel, voltage-dependent, beta 2 subunit "Calcium voltage-gated channel subunits|Membrane associated guanylate kinases" "253|904" 1992-03-27 2016-02-04 2016-10-12 783 ENSG00000165995 OTTHUMG00000017764 uc001ipr.3 U95019 NM_000724 "CCDS7125|CCDS7126|CCDS7127|CCDS7128|CCDS7129|CCDS41493|CCDS41494|CCDS81442" Q08289 "9254841|8494331" MGI:894644 RGD:67385 LRG_381|http://www.lrg-sequence.org/LRG/LRG_381 CACNB2 600003 119164 +HGNC:1403 CACNB3 calcium voltage-gated channel auxiliary subunit beta 3 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 CACNLB3 calcium channel, voltage-dependent, beta 3 subunit "Calcium voltage-gated channel subunits|Membrane associated guanylate kinases" "253|904" 1994-12-09 2016-02-04 2016-02-04 784 ENSG00000167535 OTTHUMG00000170398 uc001rsl.3 XM_017019957 "CCDS8769|CCDS55821|CCDS55822|CCDS55823" P54284 8119293 MGI:103307 RGD:2248 CACNB3 601958 +HGNC:1404 CACNB4 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding gene gene with protein product Approved 2q23.3 02q23.3 EJM4 calcium channel, voltage-dependent, beta 4 subunit "Calcium voltage-gated channel subunits|Membrane associated guanylate kinases" "253|904" 1997-04-21 2016-02-04 2016-02-04 785 ENSG00000182389 OTTHUMG00000155091 uc002txy.5 AF038852 NM_000726.3 "CCDS46426|CCDS46427|CCDS46428|CCDS54409|CCDS82520|CCDS82521|CCDS82522|CCDS82523" O00305 9628818 MGI:103301 RGD:68385 CACNB4 601949 119168 +HGNC:1405 CACNG1 calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 CACNLG calcium channel, voltage-dependent, gamma subunit 1 Calcium voltage-gated channel subunits 253 1992-03-27 2016-02-04 2016-02-04 786 ENSG00000108878 OTTHUMG00000179553 uc002jfu.4 L07738 NM_000727 CCDS11668 Q06432 8395940 MGI:1206582 RGD:2249 CACNG1 114209 +HGNC:1406 CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "stargazin|MGC138502|MGC138504" calcium channel, voltage-dependent, gamma subunit 2 Calcium voltage-gated channel subunits 253 1999-06-11 2016-02-04 2016-10-05 10369 ENSG00000166862 OTTHUMG00000030612 uc003aps.3 AF096322 XM_017028531 CCDS13931 Q9Y698 MGI:1316660 RGD:71095 CACNG2 602911 293085 +HGNC:1407 CACNG3 calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 calcium channel, voltage-dependent, gamma subunit 3 Calcium voltage-gated channel subunits 253 1999-06-11 2016-02-04 2016-02-04 10368 ENSG00000006116 OTTHUMG00000131651 uc002dmf.4 AF131911 NM_006539 CCDS10620 O60359 "10221464|10493829" MGI:1859165 RGD:628803 CACNG3 606403 +HGNC:1408 CACNG4 calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 "MGC11138|MGC24983" calcium channel, voltage-dependent, gamma subunit 4 Calcium voltage-gated channel subunits 253 2000-01-20 2016-02-04 2016-10-05 27092 ENSG00000075461 OTTHUMG00000179550 uc002jft.3 AH008289 NM_014405 CCDS11667 Q9UBN1 10613843 MGI:1859167 RGD:628804 CACNG4 606404 +HGNC:1409 CACNG5 calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 calcium channel, voltage-dependent, gamma subunit 5 Calcium voltage-gated channel subunits 253 2000-01-20 2016-02-04 2016-10-05 27091 ENSG00000075429 OTTHUMG00000166468 uc010wqi.3 AF148220 "NM_014404|NM_145811" CCDS11665 Q9UF02 10613843 MGI:2157946 RGD:628805 CACNG5 606405 +HGNC:13625 CACNG6 calcium voltage-gated channel auxiliary subunit gamma 6 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 calcium channel, voltage-dependent, gamma subunit 6 Calcium voltage-gated channel subunits 253 2000-10-24 2016-02-04 2016-10-05 59285 ENSG00000130433 OTTHUMG00000064907 uc002qct.4 AF288386 XM_006723316 "CCDS12870|CCDS12871" Q9BXT2 11170751 MGI:1859168 RGD:628806 CACNG6 606898 +HGNC:13626 CACNG7 calcium voltage-gated channel auxiliary subunit gamma 7 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 calcium channel, voltage-dependent, gamma subunit 7 Calcium voltage-gated channel subunits 253 2000-10-24 2016-02-04 2016-10-05 59284 ENSG00000105605 OTTHUMG00000064852 uc061clt.1 AF288387 XM_005259124 CCDS12868 P62955 11170751 MGI:1932374 RGD:628807 CACNG7 606899 +HGNC:13628 CACNG8 calcium voltage-gated channel auxiliary subunit gamma 8 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 calcium channel, voltage-dependent, gamma subunit 8 Calcium voltage-gated channel subunits 253 2000-10-24 2016-02-04 2016-10-05 59283 ENSG00000142408 OTTHUMG00000064908 uc061clu.1 AF288388 NM_031895 CCDS33104 Q8WXS5 11170751 MGI:1932376 RGD:628808 CACNG8 606900 +HGNC:29938 CACTIN cactin, spliceosome C complex subunit protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "NY-REN-24|fSAPc|cactin" "NY REN 24 antigen|functional spliceosome-associated protein c|cactin homolog (Drosophila)" C19orf29 chromosome 19 open reading frame 29 2004-04-05 2012-06-08 2012-06-08 2014-11-19 58509 ENSG00000105298 OTTHUMG00000180808 uc002lyh.4 BC019848 XM_011528160 CCDS45920 Q8WUQ7 "8619474|9110174|21429463|20829348" MGI:1917562 RGD:1563634 +HGNC:31391 CACTIN-AS1 CACTIN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19p13.3 19p13.3 "C19orf29OS|C19orf29-AS1" "chromosome 19 open reading frame 29 opposite strand|C19orf29 antisense RNA 1 (non-protein coding)|C19orf29 antisense RNA 1" 2004-04-05 2012-08-16 2012-08-16 2014-11-18 404665 ENSG00000226800 OTTHUMG00000180807 uc021umw.2 AK097999 NR_038865 Q8N1I8 +HGNC:23727 CACUL1 CDK2 associated cullin domain 1 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 "FLJ40409|MGC33215|CAC1" Cdk-Associated Cullin1 C10orf46 "chromosome 10 open reading frame 46|CDK2-associated, cullin domain 1" 2003-12-07 2012-06-12 2016-02-01 2016-10-05 143384 ENSG00000151893 OTTHUMG00000019138 uc001lds.2 AK097728 NM_153810 CCDS41570 Q86Y37 19829063 MGI:1926082 RGD:1308127 CACUL1 +HGNC:30423 CACYBP calcyclin binding protein protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "SIP|S100A6BP" 2004-11-03 2016-10-05 27101 ENSG00000116161 OTTHUMG00000034941 uc001gkj.2 BC022352 NM_014412 "CCDS1315|CCDS30942" Q9HB71 "11389839|12421809" MGI:1270839 RGD:1303146 CACYBP 606186 +HGNC:45122 CACYBPP1 calcyclin binding protein pseudogene 1 pseudogene pseudogene Approved 10q23.1 10q23.1 2013-02-15 2013-02-15 100420043 ENSG00000225928 OTTHUMG00000018643 NG_025452 PGOHUM00000238569 +HGNC:45123 CACYBPP2 calcyclin binding protein pseudogene 2 pseudogene pseudogene Approved 2q32.1 02q32.1 2013-02-15 2013-02-15 644877 ENSG00000177855 OTTHUMG00000153760 NG_021541 PGOHUM00000240449 +HGNC:45124 CACYBPP3 calcyclin binding protein pseudogene 3 pseudogene pseudogene Approved 6q25.3 06q25.3 2013-02-15 2013-02-15 106480809 ENSG00000219188 OTTHUMG00000015911 NG_044234 PGOHUM00000243431 +HGNC:1424 CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase protein-coding gene gene with protein product Approved 2p23.3 02p23.3 2001-06-22 2016-10-05 790 ENSG00000084774 OTTHUMG00000097070 uc002rji.4 D78586 XM_005264555 "CCDS1742|CCDS77396" P27708 "8619816|2565865" MGI:1916969 RGD:1588606 CAD 114010 457009 M38.972 "2.1.3.2|3.5.2.-" +HGNC:5951 CADM1 cell adhesion molecule 1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "NECL2|ST17|BL2|SYNCAM|IGSF4A|Necl-2|SYNCAM1|RA175" nectin-like 2 "TSLC1|IGSF4" "tumor suppressor in lung cancer 1|immunoglobulin superfamily, member 4" "V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "590|592|594" 1998-11-02 2007-02-07 2007-02-07 2016-10-05 23705 ENSG00000182985 OTTHUMG00000168202 uc001ppi.5 AB017563 NM_014333 "CCDS8373|CCDS53711|CCDS73397|CCDS73398|CCDS73399" Q9BY67 10610705 MGI:1889272 RGD:1310999 CADM1 605686 +HGNC:29849 CADM2 cell adhesion molecule 2 protein-coding gene gene with protein product Approved 3p12.1 03p12.1 "NECL3|Necl-3|SynCAM2" nectin-like 3 IGSF4D immunoglobulin superfamily, member 4D "V-set domain containing|C2-set domain containing|I-set domain containing" "590|592|593" 2004-02-24 2007-02-07 2007-02-07 2016-10-05 253559 ENSG00000175161 OTTHUMG00000158990 uc003dql.4 AF538973 NM_153184 "CCDS33792|CCDS54613|CCDS54614" Q8N3J6 MGI:2442722 RGD:1305678 CADM2 609938 +HGNC:41248 CADM2-AS1 CADM2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p12.1 03p12.1 CADM2 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874038 ENSG00000239519 OTTHUMG00000158987 uc062lrq.1 +HGNC:41247 CADM2-AS2 CADM2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p12.1 03p12.1 CADM2 antisense RNA 2 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874037 ENSG00000241648 OTTHUMG00000158991 uc031saq.1 NR_046752 +HGNC:17601 CADM3 cell adhesion molecule 3 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "BIgR|FLJ10698|TSLL1|NECL1|SynCAM3|Necl-1" nectin-like 1 IGSF4B immunoglobulin superfamily, member 4B "V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "590|592|594" 2004-02-24 2007-02-07 2007-02-07 2016-10-05 57863 ENSG00000162706 OTTHUMG00000037177 uc001ftk.3 AY046418 NM_021189 "CCDS1182|CCDS44251" Q8N126 11536053 MGI:2137858 RGD:1307035 CADM3 609743 +HGNC:40812 CADM3-AS1 CADM3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q23.2 01q23.2 CTA-134P22.2 2014-02-01 2014-11-19 100131825 ENSG00000225670 OTTHUMG00000037178 NR_037870 +HGNC:30825 CADM4 cell adhesion molecule 4 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "TSLL2|Necl-4|SynCAM4" nectin-like 4 IGSF4C immunoglobulin superfamily, member 4C "V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "590|592|594" 2004-02-24 2007-02-07 2007-02-07 2016-10-05 199731 ENSG00000105767 OTTHUMG00000182735 uc002oxc.2 AF363368 NM_145296 CCDS12627 Q8NFZ8 11536053 MGI:2449088 RGD:1304722 CADM4 609744 +HGNC:1426 CADPS calcium dependent secretion activator protein-coding gene gene with protein product Approved 3p14.2 03p14.2 "CAPS|KIAA1121|CAPS1|UNC-31" "Ca++-dependent secretion activator|Ca2+ dependent secretion activator" Pleckstrin homology domain containing 682 1999-07-21 2016-06-08 2016-10-05 8618 ENSG00000163618 OTTHUMG00000158651 uc003dll.3 U36448 "NM_003716|NM_183393|NM_183394" "CCDS2898|CCDS2899|CCDS46858" Q9ULU8 1516133 MGI:1350922 RGD:708573 CADPS 604667 +HGNC:16018 CADPS2 calcium dependent secretion activator 2 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 CAPS2 "Ca++-dependent activator protein for secretion 2|Ca2+ dependent secretion activator 2" "Pleckstrin homology domain containing|C2 domain containing" "682|823" 2001-07-12 2016-06-08 2016-06-08 93664 ENSG00000081803 OTTHUMG00000157093 uc064hnl.1 NM_017954 "CCDS47691|CCDS55158" Q86UW7 MGI:2443963 RGD:1559440 CADPS2 609978 +HGNC:1428 CAE2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-04-23 +HGNC:21622 CAGE1 cancer antigen 1 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 "bA69L16.7|CT95" cancer/testis antigen 95 CTAG3 cancer/testis antigen 3 2003-08-29 2005-01-27 2005-01-26 2015-08-24 285782 ENSG00000164304 OTTHUMG00000014200 uc063lrf.1 BC026194 NM_175745 "CCDS47367|CCDS54964|CCDS54965" Q8TC20 12531476 MGI:1918463 RGD:1306102 CAGE1 608304 +HGNC:42860 CAHM colon adenocarcinoma hypermethylated (non-protein coding) non-coding RNA RNA, long non-coding Approved 6q26 06q26 LINC00468 long intergenic non-protein coding RNA 468 Long non-coding RNAs 788 2011-09-07 2014-07-18 100526820 ENSG00000270419 OTTHUMG00000175945 uc021zib.2 BG168587 NR_037593 24799664 RGD:10059728 615930 +HGNC:1434 CALB1 calbindin 1 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 CALB calbindin 1, 28kDa EF-hand domain containing 863 2001-06-22 2015-11-09 2015-11-09 793 ENSG00000104327 OTTHUMG00000134314 uc003yel.2 NM_004929 CCDS6251 P05937 MGI:88248 RGD:69340 CALB1 114050 +HGNC:1435 CALB2 calbindin 2 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 CAL2 calretinin calbindin 2, 29kDa (calretinin) EF-hand domain containing 863 1990-09-10 2008-05-19 2015-08-24 794 ENSG00000172137 OTTHUMG00000137589 uc002faa.6 X56667 NM_001740 CCDS10899 P22676 1906795 MGI:101914 RGD:620981 CALB2 114051 +HGNC:1437 CALCA calcitonin related polypeptide alpha protein-coding gene gene with protein product Approved 11p15.2 11p15.2 calcitonin CALC1 calcitonin 1 Endogenous ligands 542 1986-01-01 2016-02-22 2016-10-12 796 ENSG00000110680 OTTHUMG00000159731 uc001mlt.2 "X00356|M64486" NM_001741 "CCDS7819|CCDS31432" "P01258|P06881" 6546550 MGI:2151253 RGD:2254 LRG_13|http://www.lrg-sequence.org/LRG/LRG_13 CALCA 114130 +HGNC:1438 CALCB calcitonin related polypeptide beta protein-coding gene gene with protein product Approved 11p15.2 11p15.2 "FLJ30166|CGRP-II" CALC2 calcitonin 2 Endogenous ligands 542 1986-01-01 2016-02-22 2016-02-22 797 ENSG00000175868 OTTHUMG00000164629 uc009ygr.2 NM_000728 CCDS7820 P10092 MGI:2151254 RGD:620997 CALCB 114160 +HGNC:29306 CALCOCO1 calcium binding and coiled-coil domain 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "KIAA1536|calphoglin|Cocoa" "coiled-coil leucine zipper coactivator 1|inorganic pyrophosphatase activator" 2005-05-17 2015-09-11 57658 ENSG00000012822 OTTHUMG00000170095 uc001sef.4 AL136895 NM_020898 "CCDS8864|CCDS44908" Q9P1Z2 "10819331|11230166" MGI:1914738 RGD:619812 CALCOCO1 +HGNC:29912 CALCOCO2 calcium binding and coiled-coil domain 2 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "MGC17318|NDP52" 2006-01-27 2016-03-24 10241 ENSG00000136436 OTTHUMG00000160505 uc002iof.4 BC004130 NM_005831 "CCDS11538|CCDS58558|CCDS58559|CCDS58560|CCDS58561" Q13137 "7540613|26506893" MGI:1343177 RGD:1559974 CALCOCO2 604587 +HGNC:1439 CALCP calcitonin pseudogene pseudogene pseudogene Approved 11p15.2 11p15.2 CALC3 1988-08-10 2013-09-19 798 ENSG00000253179 OTTHUMG00000164573 X07965 NG_001088 2898385 +HGNC:1440 CALCR calcitonin receptor protein-coding gene gene with protein product Approved 7q21.3 07q21.3 CTR Calcitonin receptors 265 1993-03-23 2016-10-12 799 ENSG00000004948 OTTHUMG00000023599 uc003umw.3 L00587 NM_001742 "CCDS5631|CCDS55125" P30988 1331173 MGI:101950 RGD:621001 LRG_1037|http://www.lrg-sequence.org/LRG/LRG_1037 CALCR 114131 objectId:43 +HGNC:16709 CALCRL calcitonin receptor like receptor protein-coding gene gene with protein product Approved 2q32.1 02q32.1 "CGRPR|CRLR" calcitonin receptor-like Calcitonin receptors 265 2001-10-02 2015-11-12 2016-10-05 10203 ENSG00000064989 OTTHUMG00000132636 uc061qml.1 U17473 NM_005795 CCDS2293 Q16602 "7818539|8626685" MGI:1926944 RGD:2255 CALCRL 114190 objectId:47 +HGNC:1441 CALD1 caldesmon 1 protein-coding gene gene with protein product Approved 7q33 07q33 "CDM|H-CAD|L-CAD" 1992-07-20 2016-04-25 800 ENSG00000122786 OTTHUMG00000155407 uc003vrz.4 M64110 NM_033138 "CCDS47716|CCDS47717|CCDS5834|CCDS5835|CCDS5836" Q05682 1885618 MGI:88250 RGD:2256 CALD1 114213 +HGNC:23494 CALHM1 calcium homeostasis modulator 1 protein-coding gene gene with protein product Approved 10q24.33 10q24.33 FAM26C family with sequence similarity 26, member C 2004-05-27 2008-07-02 2008-07-02 2014-11-19 255022 ENSG00000185933 OTTHUMG00000018991 uc001kxe.3 BC036208 NM_001001412 CCDS7550 Q8IU99 18585350 MGI:3643383 RGD:1564891 CALHM1 612234 +HGNC:23493 CALHM2 calcium homeostasis modulator 2 protein-coding gene gene with protein product Approved 10q24.33 10q24.33 FAM26B family with sequence similarity 26, member B 2004-05-27 2008-07-02 2008-07-02 2014-11-19 51063 ENSG00000138172 OTTHUMG00000018990 uc001kxb.4 BC000039 NM_015916 CCDS7549 Q9HA72 18585350 MGI:1919941 RGD:1308276 CALHM2 612235 +HGNC:23458 CALHM3 calcium homeostasis modulator 3 protein-coding gene gene with protein product Approved 10q24.33 10q24.33 bA225H22.7 FAM26A family with sequence similarity 26, member A 2004-06-02 2008-07-02 2008-07-02 2015-08-24 119395 ENSG00000183128 OTTHUMG00000018989 uc001kxg.4 BC043367 NM_182494 CCDS44476 Q86XJ0 18585350 MGI:3645665 RGD:1560215 CALHM3 +HGNC:1442 CALM1 calmodulin 1 protein-coding gene gene with protein product Approved 14q32.11 14q32.11 "CAMI|PHKD|DD132" "prepro-calmodulin 1|phosphorylase kinase subunit delta" CALML2 calmodulin 1 (phosphorylase kinase, delta) "Endogenous ligands|EF-hand domain containing" "542|863" 1991-06-05 2016-06-27 2016-06-27 801 ENSG00000198668 OTTHUMG00000171044 uc001xyl.3 XM_006720258 CCDS9892 P62158 6385987 MGI:88251 RGD:2257 CALM1 114180 317387 2.7.11.19 +HGNC:1443 CALM1P1 calmodulin 1 pseudogene 1 pseudogene pseudogene Approved Xq21.33 Xq21.33 CALML1 "calmodulin-like 1|calmodulin 1 (phosphorylase kinase, delta) pseudogene 1" 1995-11-02 2011-03-18 2016-06-27 2016-06-27 802 ENSG00000223467 OTTHUMG00000021979 U12435 NG_001089 7925473 +HGNC:1444 CALM1P2 calmodulin 1 pseudogene 2 pseudogene pseudogene Approved 7p11.2 07p11.2 TCAG_1643085 calmodulin 1 (phosphorylase kinase, delta) pseudogene 2 1995-11-02 2016-06-27 2016-06-27 804 ENSG00000230564 OTTHUMG00000156129 U12475 NG_001090 7925473 PGOHUM00000232696 +HGNC:1445 CALM2 calmodulin 2 protein-coding gene gene with protein product Approved 2p21 02p21 "PHKD|CAMII" "prepro-calmodulin 2|phosphorylase kinase subunit delta" calmodulin 2 (phosphorylase kinase, delta) "Endogenous ligands|EF-hand domain containing" "542|863" 1991-06-04 2016-06-27 2016-10-05 805 ENSG00000143933 OTTHUMG00000128850 uc002rvt.2 NM_001743 CCDS1832 P62158 MGI:103250 CALM2 114182 422270 +HGNC:1446 CALM2P1 calmodulin 2 pseudogene 1 pseudogene pseudogene Approved 17q24.3 17q24.3 1991-10-09 2011-03-18 100128390 ENSG00000267170 OTTHUMG00000180352 X13907 NG_002716 2717417 PGOHUM00000237500 +HGNC:1447 CALM2P2 calmodulin 2 pseudogene 2 pseudogene pseudogene Approved 10q22.1 10q22.1 1991-09-13 2011-03-18 806 ENSG00000229097 OTTHUMG00000018401 X52955 NG_001091 1999288 PGOHUM00000238832 +HGNC:1448 CALM2P3 calmodulin 2 pseudogene 3 pseudogene pseudogene Approved 13q14.11 13q14.11 1991-09-13 2010-11-24 807 ENSG00000215482 OTTHUMG00000016785 X52956 NG_004858 1999288 PGOHUM00000248379 +HGNC:39661 CALM2P4 calmodulin 2 pseudogene 4 pseudogene pseudogene Approved 13q32.2 13q32.2 2011-03-18 2011-03-18 643193 ENSG00000233662 OTTHUMG00000017253 NG_011335 PGOHUM00000248475 +HGNC:1449 CALM3 calmodulin 3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 PHKD "prepro-calmodulin 3|phosphorylase kinase subunit delta" calmodulin 3 (phosphorylase kinase, delta) "Endogenous ligands|EF-hand domain containing" "542|863" 1991-06-05 2016-06-27 2016-10-12 808 ENSG00000160014 OTTHUMG00000133517 uc002pew.4 NM_001329923 CCDS33061 P62158 MGI:103249 RGD:2259 LRG_1082|http://www.lrg-sequence.org/LRG/LRG_1082 CALM3 114183 437180 +HGNC:1452 CALML3 calmodulin like 3 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 CLP calmodulin-like 3 EF-hand domain containing 863 1993-07-27 2015-11-23 2015-11-23 810 ENSG00000178363 OTTHUMG00000017597 uc001iie.2 X13461 NM_005185 CCDS7069 P27482 8476923 MGI:1917655 RGD:1305499 CALML3 114184 +HGNC:44682 CALML3-AS1 CALML3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p15.1 10p15.1 2012-12-04 2012-12-04 100132159 ENSG00000205488 OTTHUMG00000168090 uc001iid.2 "DA220455|DA770774" NR_120497 +HGNC:18445 CALML4 calmodulin like 4 protein-coding gene gene with protein product Approved 15q23 15q23 "MGC4809|NY-BR-20" calmodulin-like 4 EF-hand domain containing 863 2004-06-25 2015-11-23 2016-10-05 91860 ENSG00000129007 OTTHUMG00000133287 uc002ard.5 AF308287 NM_033429 "CCDS10226|CCDS42052|CCDS66808" Q96GE6 MGI:1922850 RGD:1583918 CALML4 +HGNC:18180 CALML5 calmodulin like 5 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 CLSP calmodulin-like skin protein calmodulin-like 5 EF-hand domain containing 863 2003-11-10 2015-11-23 2015-11-23 51806 ENSG00000178372 OTTHUMG00000017598 uc001iic.3 AF172852 NM_017422 CCDS7068 Q9NZT1 10777582 MGI:1931464 RGD:1310047 CALML5 605183 +HGNC:24193 CALML6 calmodulin like 6 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 CAGLP calmodulin-like 6 EF-hand domain containing 863 2005-01-24 2015-11-23 2015-11-23 163688 ENSG00000169885 OTTHUMG00000000943 uc001aih.1 AF490905 NM_138705 "CCDS30566|CCDS81255" Q8TD86 CALML6 610171 +HGNC:13248 CALN1 calneuron 1 protein-coding gene gene with protein product Approved 7q11.22 07q11.22 calcium-binding protein CABP8 EF-hand domain containing 863 2001-04-26 2016-10-05 83698 ENSG00000183166 OTTHUMG00000023787 uc003twc.5 AF282250 NM_031468 "CCDS5541|CCDS47603" Q9BXU9 11286509 MGI:2155987 RGD:1305843 CALN1 607176 +HGNC:1455 CALR calreticulin protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "RO|SSA|cC1qR|CRT|FLJ26680" "Sicca syndrome antigen A (autoantigen Ro; calreticulin)|autoantigen Ro" 1990-09-10 2016-10-12 811 ENSG00000179218 OTTHUMG00000180574 uc002mvu.3 M84739 NM_004343 CCDS12288 P27797 2365822 MGI:88252 RGD:620288 LRG_828|http://www.lrg-sequence.org/LRG/LRG_828 CALR 109091 391684 +HGNC:20407 CALR3 calreticulin 3 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "CRT2|FLJ25355|MGC26577|CT93" "cancer/testis antigen 93|calsperin" 2003-02-04 2016-10-12 125972 ENSG00000269058 OTTHUMG00000152571 uc002ned.3 AK058084 NM_145046 CCDS12344 Q96L12 12384296 MGI:1920566 RGD:1309243 LRG_422|http://www.lrg-sequence.org/LRG/LRG_422 CALR3 611414 264440 +HGNC:35456 CALR4P calreticulin 4, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 2010-03-12 2014-11-19 441884 ENSG00000227742 OTTHUMG00000008233 NG_021361 20210993 MGI:2140435 +HGNC:1458 CALU calumenin protein-coding gene gene with protein product Approved 7q32.1 07q32.1 EF-hand domain containing 863 1997-07-25 2016-10-05 813 ENSG00000128595 OTTHUMG00000158274 uc003vnq.4 AF013759 NM_001219 "CCDS5805|CCDS47703|CCDS56506|CCDS56507|CCDS56508" O43852 9598325 MGI:1097158 RGD:620383 CALU 603420 +HGNC:17938 CALY calcyon neuron specific vesicular protein protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "CALCYON|NSG3" DRD1IP "dopamine receptor D1 interacting protein|calcyon neuron-specific vesicular protein" 2004-04-20 2008-01-16 2016-02-01 2016-02-01 50632 ENSG00000130643 OTTHUMG00000019310 uc001lmo.3 AF225903 NM_015722 CCDS7678 Q9NYX4 "10698743|17623072" MGI:1915816 RGD:621719 CALY 604647 +HGNC:1459 CAMK1 calcium/calmodulin dependent protein kinase I protein-coding gene gene with protein product Approved 3p25.3 03p25.3 CaMKI 1998-10-16 2016-04-06 2016-04-06 8536 ENSG00000134072 OTTHUMG00000128419 uc003bst.4 L41816 NM_003656 CCDS2582 Q14012 7641687 MGI:1098535 RGD:629473 CAMK1 604998 objectId:1952 2.7.11.17 +HGNC:19341 CAMK1D calcium/calmodulin dependent protein kinase ID protein-coding gene gene with protein product Approved 10p13 10p13 CKLiK calcium/calmodulin-dependent protein kinase ID 2003-11-05 2015-12-04 2015-12-04 57118 ENSG00000183049 OTTHUMG00000017683 uc001ilp.5 AF286366 NM_020397 "CCDS7091|CCDS7092" Q8IU85 11050006 MGI:2442190 RGD:1560691 CAMK1D 607957 objectId:1953 2.7.11.17 +HGNC:14585 CAMK1G calcium/calmodulin dependent protein kinase IG protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "VWS1|CLICKIII|dJ272L16.1" calcium/calmodulin-dependent protein kinase IG 2001-03-21 2016-02-03 2016-02-03 57172 ENSG00000008118 OTTHUMG00000036361 uc001hhe.4 NM_020439 CCDS1486 Q96NX5 12637513 MGI:2388073 RGD:621800 CAMK1G 614994 objectId:1954 2.7.11.17 +HGNC:1460 CAMK2A calcium/calmodulin dependent protein kinase II alpha protein-coding gene gene with protein product Approved 5q32 05q32 "KIAA0968|CaMKIINalpha" "CaM-kinase II alpha chain|calcium/calmodulin-dependent protein kinase II alpha-B subunit|CaM kinase II alpha subunit|CaMK-II alpha subunit|calcium/calmodulin-dependent protein kinase type II alpha chain" CAMKA calcium/calmodulin-dependent protein kinase (CaM kinase) II alpha 1993-11-24 2016-04-06 2016-04-06 815 ENSG00000070808 OTTHUMG00000134281 uc003lru.3 AB023185 NM_015981 "CCDS43386|CCDS43387" Q9UQM7 "10231032|3475713" MGI:88256 RGD:2261 CAMK2A 114078 objectId:1555 2.7.11.17 +HGNC:1461 CAMK2B calcium/calmodulin dependent protein kinase II beta protein-coding gene gene with protein product Approved 7p13 07p13 "CAM2|CAMK2" "CaM-kinase II beta chain|calcium/calmodulin-dependent protein kinase type II beta chain|CaM kinase II beta subunit|proline rich calmodulin-dependent protein kinase" CAMKB calcium/calmodulin-dependent protein kinase (CaM kinase) II beta 1993-11-24 2016-04-06 2016-10-05 816 ENSG00000058404 OTTHUMG00000023491 uc010kyc.3 U50358 NM_172084 "CCDS5483|CCDS5484|CCDS5485|CCDS5486|CCDS5487|CCDS5488|CCDS5489|CCDS43573" Q13554 MGI:88257 RGD:2262 CAMK2B 607707 objectId:1556 2.7.11.17 +HGNC:1462 CAMK2D calcium/calmodulin dependent protein kinase II delta protein-coding gene gene with protein product Approved 4q26 04q26 CAMKD calcium/calmodulin-dependent protein kinase (CaM kinase) II delta 1993-11-24 2016-04-06 2016-04-06 817 ENSG00000145349 OTTHUMG00000132910 uc003ibk.3 U50361 NM_001321566 "CCDS3703|CCDS3704|CCDS43263|CCDS47127|CCDS54797|CCDS82948|CCDS82949|CCDS82950" Q13557 MGI:1341265 RGD:2263 CAMK2D 607708 objectId:1558 2.7.11.17 +HGNC:1463 CAMK2G calcium/calmodulin dependent protein kinase II gamma protein-coding gene gene with protein product Approved 10q22.2 10q22.2 CAMKG calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma 1993-11-24 2016-04-06 2016-10-05 818 ENSG00000148660 OTTHUMG00000018492 uc001jvr.3 U81554 NM_172169 "CCDS7336|CCDS7337|CCDS7338|CCDS73153" Q13555 8287681 MGI:88259 RGD:621802 CAMK2G 602123 objectId:1557 2.7.11.17 +HGNC:24190 CAMK2N1 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 CaMKIINalpha 2005-06-10 2016-04-06 2016-04-06 55450 ENSG00000162545 OTTHUMG00000002837 uc001bdh.4 AY204901 NM_018584 CCDS207 Q7Z7J9 12477932 MGI:1913509 RGD:708430 CAMK2N1 614986 +HGNC:24197 CAMK2N2 calcium/calmodulin dependent protein kinase II inhibitor 2 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 CaM-KIIN 2005-06-10 2016-04-06 2016-04-06 94032 ENSG00000163888 OTTHUMG00000156821 uc003fnj.2 AY037149 NM_033259 CCDS3257 Q96S95 "11444830|9724800" MGI:1920297 RGD:708411 CAMK2N2 608721 +HGNC:1464 CAMK4 calcium/calmodulin dependent protein kinase IV protein-coding gene gene with protein product Approved 5q22.1 05q22.1 CaMK-GR "brain Ca++-calmodulin-dependent protein kinase type IV|calcium/calmodulin-dependent protein kinase type IV catalytic chain|CAM kinase IV|CAM kinase- GR" 1989-05-24 2016-06-08 2016-06-08 814 ENSG00000152495 OTTHUMG00000128792 uc003kpf.4 D30742 NM_001744 CCDS4103 Q16566 2536634 MGI:88258 RGD:2264 CAMK4 114080 objectId:1955 2.7.11.17 +HGNC:1469 CAMKK1 calcium/calmodulin dependent protein kinase kinase 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "DKFZp761M0423|CAMKKA|MGC34095" calcium/calmodulin-dependent protein kinase kinase alpha calcium/calmodulin-dependent protein kinase kinase 1, alpha 1999-08-27 2016-06-08 2016-10-05 84254 ENSG00000004660 OTTHUMG00000090725 uc002fwu.4 AL136576 "NM_032294|NM_172206|NM_172207" "CCDS11038|CCDS11039" Q8N5S9 11230166 MGI:1891766 RGD:62023 CAMKK1 611411 objectId:1956 2.7.11.17 +HGNC:1470 CAMKK2 calcium/calmodulin dependent protein kinase kinase 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "CAMKK|KIAA0787|CAMKKB|MGC15254" calcium/calmodulin-dependent protein kinase kinase beta calcium/calmodulin-dependent protein kinase kinase 2, beta 1999-08-27 2016-06-08 2016-06-08 10645 ENSG00000110931 OTTHUMG00000169156 uc001tzv.4 AF101264 NM_172226 "CCDS9216|CCDS9217|CCDS9218|CCDS9219|CCDS44999|CCDS53837|CCDS58283" Q96RR4 9662074 MGI:2444812 RGD:620092 CAMKK2 615002 objectId:1957 2.7.11.17 +HGNC:26276 CAMKMT calmodulin-lysine N-methyltransferase protein-coding gene gene with protein product Approved 2p21 02p21 CLNMT CaM KMT C2orf34 chromosome 2 open reading frame 34 2005-04-26 2011-03-10 2011-03-10 2015-08-24 79823 ENSG00000143919 OTTHUMG00000128761 uc002rum.4 NM_024766 CCDS1820 Q7Z624 20975703 MGI:1920832 RGD:1310453 CAMKMT 609559 244716 2.1.1.60 +HGNC:28788 CAMKV CaM kinase like vesicle associated protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "MGC8407|VACAMKL" CaM kinase-like vesicle-associated 2005-03-04 2016-04-27 2016-04-27 79012 ENSG00000164076 OTTHUMG00000158288 uc003cxt.2 BC017363 NM_024046 "CCDS33762|CCDS82776" Q8NCB2 12477932 MGI:2384296 RGD:621488 CAMKV 614993 objectId:1958 +HGNC:1471 CAMLG calcium modulating ligand protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "CAML|GET2" "calcium-modulating cyclophilin ligand|calcium-signal modulating cyclophilin ligand|cyclophilin B-binding protein" 1994-02-08 2016-10-05 819 ENSG00000164615 OTTHUMG00000129116 uc003kzt.4 AF068179.1 NM_001745 CCDS4178 P49069 "8824814|24392163" MGI:104728 RGD:69297 CAMLG 601118 +HGNC:1472 CAMP cathelicidin antimicrobial peptide protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CAP18|FALL39|FALL-39|LL37" Endogenous ligands 542 1996-12-12 2016-10-05 820 ENSG00000164047 OTTHUMG00000133526 uc003csj.3 BC055089 NM_004345 CCDS2762 P49913 7624374 MGI:108443 RGD:1559878 CAMP 600474 +HGNC:19946 CAMSAP1 calmodulin regulated spectrin associated protein 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "FLJ31228|DKFZp434F195" calmodulin regulated spectrin-associated protein 1 2003-12-09 2015-11-17 2015-11-17 157922 ENSG00000130559 OTTHUMG00000020918 uc004cgr.5 AJ519841 XM_351857 CCDS35176 Q5T5Y3 12477932 MGI:3036242 RGD:1565022 CAMSAP1 613774 +HGNC:29188 CAMSAP2 calmodulin regulated spectrin associated protein family member 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 KIAA1078 CAMSAP1L1 "calmodulin regulated spectrin-associated protein 1-like 1|calmodulin regulated spectrin-associated protein family, member 2" 2005-05-19 2011-08-18 2015-11-17 2016-10-05 23271 ENSG00000118200 OTTHUMG00000035740 uc001gvk.4 AB029001 NM_203459 "CCDS1404|CCDS72998|CCDS72999" Q08AD1 "15897902|19508979" MGI:1922434 RGD:1310950 CAMSAP2 613775 +HGNC:29307 CAMSAP3 calmodulin regulated spectrin associated protein family member 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "Nezha|PPP1R80" protein phosphatase 1, regulatory subunit 80 KIAA1543 "KIAA1543|calmodulin regulated spectrin-associated protein family, member 3" Protein phosphatase 1 regulatory subunits 694 2004-02-12 2011-08-18 2015-11-17 2016-01-15 57662 ENSG00000076826 OTTHUMG00000182096 uc002mgv.5 AB040976 XM_048362 "CCDS42489|CCDS45947" Q9P1Y5 "11318610|10819331|19041755|19508979" MGI:1916947 RGD:1597412 CAMSAP3 612685 +HGNC:18806 CAMTA1 calmodulin binding transcription activator 1 protein-coding gene gene with protein product Approved 1p36.31-p36.23 01p36.31-p36.23 KIAA0833 2002-06-20 2016-10-11 23261 ENSG00000171735 OTTHUMG00000001212 uc001aoi.3 AB020640 NM_015215 "CCDS30576|CCDS55574|CCDS55575" Q9Y6Y1 11925432 MGI:2140230 RGD:1562703 CAMTA1 611501 317761 +HGNC:41446 CAMTA1-IT1 CAMTA1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p36.23 01p36.23 CAMTA1 intronic transcript 1 (non-protein coding) 2011-05-31 2015-02-25 2015-02-25 100874340 ENSG00000237402 OTTHUMG00000001217 uc057bxd.1 +HGNC:18807 CAMTA2 calmodulin binding transcription activator 2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 KIAA0909 2002-06-20 2016-10-05 23125 ENSG00000108509 OTTHUMG00000099417 uc002gah.3 AB020716 NM_015099 "CCDS11063|CCDS54071|CCDS54072|CCDS54073" O94983 11925432 MGI:2135957 RGD:1311296 CAMTA2 611508 +HGNC:30688 CAND1 cullin associated and neddylation dissociated 1 protein-coding gene gene with protein product Approved 12q14.3-q15 12q14.3-q15 "TIP120A|DKFZp434M1414|KIAA0829|TIP120" TBP interacting protein cullin-associated and neddylation-dissociated 1 2005-05-24 2016-04-27 2016-10-11 55832 ENSG00000111530 OTTHUMG00000169060 uc001stn.3 NM_018448 CCDS8977 Q86VP6 "10048485|8954946" MGI:1261820 RGD:620479 CAND1 607727 +HGNC:30689 CAND2 cullin associated and neddylation dissociated 2 (putative) protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "TIP120B|KIAA0667|Tp120b" TBP interacting protein cullin-associated and neddylation-dissociated 2 (putative) 2005-05-24 2016-04-27 2016-04-27 23066 ENSG00000144712 OTTHUMG00000155397 uc003bxk.3 XM_371617 "CCDS43053|CCDS54554" O75155 "9734811|10441524" MGI:1914338 RGD:620480 CAND2 610403 +HGNC:20683 CANDN1 candidiasis, nail 1 (with ICAM1 deficiency) phenotype phenotype only Approved 11p12-q12.1 11p12-q12.1 "FCNC|CANDF3" 2003-03-18 2011-02-10 338434 "12205111|12774035" 607644 +HGNC:19721 CANT1 calcium activated nucleotidase 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "SHAPY|SCAN-1" Soluble Ca-Activated Nucleotidase, isozyme 1 2004-02-17 2004-10-15 2004-10-12 2014-11-19 124583 ENSG00000171302 OTTHUMG00000177570 uc002jwj.4 AJ312208 NM_138793 CCDS11760 Q8WVQ1 12167635 MGI:1923275 RGD:628743 CANT1 613165 218036 +HGNC:1473 CANX calnexin protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "CNX|IP90|P90" major histocompatibility complex class I antigen-binding protein p88 1993-07-12 2016-10-05 821 ENSG00000127022 OTTHUMG00000130910 uc003mkl.4 L18887 NM_001024649 CCDS4447 P27824 "1326756|8136357" MGI:88261 RGD:2266 CANX 114217 +HGNC:20040 CAP1 adenylate cyclase associated protein 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 CAP CAP, adenylate cyclase-associated protein 1 (yeast) 2003-07-17 2016-06-09 2016-10-05 10487 ENSG00000131236 OTTHUMG00000004493 uc001cey.5 L12168 NM_006367 "CCDS41309|CCDS81304" Q01518 "1406678|8761950" MGI:88262 RGD:620309 CAP1 +HGNC:31134 CAP1P1 CAP1 pseudogene 1 pseudogene pseudogene Approved 3p12.3 03p12.3 2007-08-17 2014-11-19 401076 NG_022250 +HGNC:31970 CAP1P2 CAP1 pseudogene 2 pseudogene pseudogene Approved 10q11.21 10q11.21 2007-08-17 2014-11-18 399748 ENSG00000232004 OTTHUMG00000018035 NG_022144 +HGNC:20039 CAP2 CAP, adenylate cyclase-associated protein, 2 (yeast) protein-coding gene gene with protein product Approved 6p22.3 06p22.3 2003-05-12 2015-09-11 10486 ENSG00000112186 OTTHUMG00000014311 uc003ncb.4 BC008481 XM_011514233 CCDS4539 P40123 "7962207|8761950" MGI:1914502 RGD:620310 CAP2 +HGNC:20142 CAP2P1 CAP, adenylate cyclase-associated protein, 2 (yeast) pseudogene 1 pseudogene pseudogene Approved 14q31.3 14q31.3 2003-05-12 2012-08-08 353163 ENSG00000259151 OTTHUMG00000170969 BF062148 NG_002772 PGOHUM00000247881 +HGNC:1474 CAPG capping actin protein, gelsolin like protein-coding gene gene with protein product Approved 2p11.2 02p11.2 MCP macrophage capping protein AFCP capping protein (actin filament), gelsolin-like Gelsolin/villins 950 1993-12-14 2016-01-18 2016-01-18 822 ENSG00000042493 OTTHUMG00000130183 uc061lgh.1 M94345 NM_001747 "CCDS1974|CCDS58715" P40121 "1322908|12754261" MGI:1098259 RGD:1311724 CAPG 153615 +HGNC:1476 CAPN1 calpain 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "muCANP|muCL|CANP|CANPL1" calpain 1, (mu/I) large subunit "EF-hand domain containing|Calpains" "863|975" 1989-06-30 2016-01-19 2016-10-05 823 ENSG00000014216 OTTHUMG00000165614 uc009yqd.3 X04366 NM_005186 CCDS44644 P07384 "3017764|2209092" MGI:88263 RGD:2267 CAPN1 114220 C02.001 objectId:2336 3.4.22.52 +HGNC:1479 CAPN2 calpain 2 protein-coding gene gene with protein product Approved 1q41 01q41 "mCANP|CANPml|CANPL2" calpain 2, (m/II) large subunit "EF-hand domain containing|Calpains" "863|975" 1989-06-30 2016-01-19 2016-10-05 824 ENSG00000162909 OTTHUMG00000037376 uc001hob.5 J04700 NM_001748 "CCDS31035|CCDS53478" P17655 "2852952|2539381" MGI:88264 RGD:2268 CAPN2 114230 C02.002 objectId:2337 3.4.22.52 +HGNC:1480 CAPN3 calpain 3 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "CANP3|p94|nCL-1" "LGMD2|LGMD2A" "EF-hand domain containing|Calpains" "863|975" 1989-06-30 2015-07-03 2016-10-12 825 ENSG00000092529 OTTHUMG00000130619 uc001zpp.2 X85030 NM_024344 "CCDS10085|CCDS10086|CCDS32207|CCDS45245|CCDS45246" P20807 "2555341|7720071" MGI:107437 RGD:2269 "Calpain-3; Limb-Girdle Muscular Dystrophy, type 2A|http://www.LOVD.nl/CAPN3|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=CAPN3|LRG_849|http://www.lrg-sequence.org/LRG/LRG_849" CAPN3 114240 119172 C02.004 3.4.22.52 +HGNC:1482 CAPN5 calpain 5 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "nCL-3|HTRA3|ADNIV" VRNI vitreoretinopathy, neovascular inflammatory "C2 domain containing|Calpains" "823|975" 1997-11-05 2016-10-05 726 ENSG00000149260 OTTHUMG00000165192 uc001oxx.4 NM_004055 CCDS8248 O15484 "9503024|9367857|23055945" MGI:1100859 RGD:620084 CAPN5 602537 331692 C02.011 +HGNC:1483 CAPN6 calpain 6 protein-coding gene gene with protein product Approved Xq23 Xq23 "CAPNX|CalpM|CANPX" "C2 domain containing|Calpains" "823|975" 1997-11-05 2015-08-24 827 ENSG00000077274 OTTHUMG00000022203 uc004epc.3 AF029232 NM_014289 CCDS14555 Q9Y6Q1 "9503024|9339374" MGI:1100850 RGD:70960 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CAPN6 CAPN6 300146 C02.971 +HGNC:1484 CAPN7 calpain 7 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 PalBH "calpain like protease|homolog of Aspergillus Nidulans PALB" Calpains 975 1999-12-02 2016-10-05 23473 ENSG00000131375 OTTHUMG00000129863 uc003bzn.4 AB028639 NM_014296 CCDS2624 Q9Y6W3 "8163008|10051333" MGI:1338030 RGD:1304855 CAPN7 606400 C02.029 +HGNC:1485 CAPN8 calpain 8 protein-coding gene gene with protein product Approved 1q41 01q41 nCL-2 calpain 8 (nCL-2) "EF-hand domain containing|Calpains" "863|975" 1998-09-25 2007-02-21 2015-09-11 388743 ENSG00000203697 OTTHUMG00000037378 uc031vow.1 NM_001143962 CCDS73038 A6NHC0 "7690035|8889549" MGI:2181366 RGD:620085 CAPN8 C02.007 +HGNC:1486 CAPN9 calpain 9 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "nCL-4|GC36" novel calpain large subunit-4 calpain 9 (nCL-4) "EF-hand domain containing|Calpains" "863|975" 1998-09-25 2004-11-11 2016-10-05 10753 ENSG00000135773 OTTHUMG00000037779 uc001htz.2 AF022799 NM_006615 "CCDS1586|CCDS31053|CCDS81431" O14815 "9524069|10835488" MGI:1920897 RGD:70965 CAPN9 606401 C02.006 +HGNC:1477 CAPN10 calpain 10 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 Calpains 975 1998-09-25 2014-11-19 11132 ENSG00000142330 OTTHUMG00000133358 uc002vzk.2 AF089088 NM_023083 "CCDS33420|CCDS42838" Q9HC96 "11017071|11018080" MGI:1344392 RGD:69354 CAPN10 605286 C02.018 +HGNC:48839 CAPN10-AS1 CAPN10 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 2q37.3 02q37.3 locus959 locus 959 2013-06-18 2014-01-15 101752400 ENSG00000260942 OTTHUMG00000170676 AK024254 NR_103792 23382218 +HGNC:1478 CAPN11 calpain 11 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "EF-hand domain containing|Calpains" "863|975" 1999-08-19 2016-10-05 11131 ENSG00000137225 OTTHUMG00000014758 uc003owt.1 AJ242832 XR_001743134 CCDS47436 Q9UMQ6 10409436 MGI:1352490 RGD:1302946 CAPN11 604822 C02.013 +HGNC:13249 CAPN12 calpain 12 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "EF-hand domain containing|Calpains" "863|975" 2004-10-20 2014-11-19 147968 ENSG00000182472 OTTHUMG00000182525 uc002ojd.2 BC014027 XM_017026355 CCDS12519 Q6ZSI9 MGI:1891369 RGD:1307341 CAPN12 608839 C02.017 +HGNC:16663 CAPN13 calpain 13 protein-coding gene gene with protein product Approved 2p23.1 02p23.1 FLJ23523 Calpains 975 2004-07-02 2016-10-05 92291 ENSG00000162949 OTTHUMG00000152053 uc061hvv.1 NM_144575 CCDS46252 Q6MZZ7 11675017 MGI:2685789 RGD:1562682 CAPN13 610228 C02.020 +HGNC:16664 CAPN14 calpain 14 protein-coding gene gene with protein product Approved 2p23.1 02p23.1 "EF-hand domain containing|Calpains" "863|975" 2004-11-26 2016-10-05 440854 ENSG00000214711 OTTHUMG00000152039 uc010yms.3 AC015980 NM_001145122 CCDS46254 A8MX76 11675017 CAPN14 610229 C02.021 +HGNC:11182 CAPN15 calpain 15 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 SOLH "small optic lobes (Drosophila) homolog|small optic lobes homolog (Drosophila)" "Zinc fingers RANBP2-type |Calpains" "89|975" 1998-08-26 2013-06-27 2013-06-27 2015-08-24 6650 ENSG00000103326 OTTHUMG00000119059 U85647 NM_005632 CCDS10410 O75808 9722942 MGI:1355075 RGD:1306514 603267 +HGNC:1481 CAPNS1 calpain small subunit 1 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "CANP|CANPS|30K|CDPS" CAPN4 EF-hand domain containing 863 1989-06-30 2001-08-10 2016-02-10 2016-10-05 826 ENSG00000126247 OTTHUMG00000160811 uc002odj.4 X04106 XM_005259295 CCDS12489 P04632 "3024120|3016651" MGI:88266 RGD:2270 CAPNS1 114170 3.4.22.52 +HGNC:39562 CAPNS1P1 calpain small subunit 1 pseudogene 1 pseudogene pseudogene Approved 1p22.2 01p22.2 2011-03-09 2016-02-10 2016-02-10 391053 ENSG00000215874 OTTHUMG00000010125 NG_022791 PGOHUM00000244788 +HGNC:16371 CAPNS2 calpain small subunit 2 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 "MGC12536|MGC14804" EF-hand domain containing 863 2004-07-19 2016-02-10 2016-02-10 84290 ENSG00000256812 OTTHUMG00000167812 uc002eid.2 AY052551 NM_032330 CCDS54010 Q96L46 11853546 MGI:1916793 RGD:1583620 CAPNS2 616767 +HGNC:6743 CAPRIN1 cell cycle associated protein 1 protein-coding gene gene with protein product Approved 11p13 11p13 "caprin-1|RNG105" cytoplasmic activation/proliferation-associated protein-1 "M11S1|GPIAP1" "membrane component, chromosome 11, surface marker 1|GPI-anchored membrane protein 1" 1995-12-18 2007-03-27 2007-03-27 2014-11-19 4076 ENSG00000135387 OTTHUMG00000166248 uc001mvh.2 BC001731 NM_005898 "CCDS31453|CCDS31454" Q14444 "7657653|16177067|17210633|14764709|15471883" MGI:1858234 RGD:1305707 CAPRIN1 601178 +HGNC:21259 CAPRIN2 caprin family member 2 protein-coding gene gene with protein product Approved 12p11.21 12p11.21 "EEG1|FLJ22569|FLJ11391|caprin-2|RNG140" C1QDC1 C1q domain containing 1 2003-06-02 2007-03-27 2007-03-27 2016-10-05 65981 ENSG00000110888 OTTHUMG00000169185 uc001rjh.2 AY074491 NM_023925 "CCDS41766|CCDS55816|CCDS8720" Q6IMN6 "11347906|14764709" MGI:2448541 RGD:1593683 CAPRIN2 610375 +HGNC:1487 CAPS calcyphosine protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "CAPS1|MGC126562" "calcyphosine 1|thyroid protein p24" EF-hand domain containing 863 1990-05-31 2016-07-18 828 ENSG00000105519 OTTHUMG00000180619 uc002mdt.4 X97966 NM_004058 "CCDS12156|CCDS45934" Q13938 "9224948|2265558" CAPS 114212 +HGNC:16471 CAPS2 calcyphosine 2 protein-coding gene gene with protein product Approved 12q21.1-q21.2 12q21.1-q21.2 calcyphosphine 2 EF-hand domain containing 863 2002-09-16 2005-05-09 2016-10-11 84698 ENSG00000180881 OTTHUMG00000152787 uc001sxk.4 AF251056 XM_011538886 "CCDS9008|CCDS66424|CCDS73497" Q9BXY5 11846421 MGI:2441980 RGD:1309826 CAPS2 607724 +HGNC:28375 CAPSL calcyphosine like protein-coding gene gene with protein product Approved 5p13.2 05p13.2 MGC26610 calcyphosine-like EF-hand domain containing 863 2005-05-09 2016-01-06 2016-01-06 133690 ENSG00000152611 OTTHUMG00000131109 uc003jju.2 BC017586 NM_144647 CCDS3912 Q8WWF8 12477932 MGI:1922818 RGD:1308776 CAPSL +HGNC:1488 CAPZA1 capping actin protein of muscle Z-line alpha subunit 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 capping protein (actin filament) muscle Z-line, alpha 1 1994-05-26 2016-02-03 2016-09-19 829 ENSG00000116489 OTTHUMG00000011769 uc001ecj.2 U56637 NM_006135 CCDS30805 P52907 "7665558|9119363" MGI:106227 RGD:1587438 CAPZA1 601580 +HGNC:1489 CAPZA1P capping actin protein of muscle Z-line alpha subunit 1 pseudogene pseudogene pseudogene Approved Xq21.31 Xq21.31 capping protein (actin filament) muscle Z-line, alpha 1 pseudogene 2000-05-02 2016-02-03 2016-02-03 53338 AF284769 NG_001277 11499681 +HGNC:1490 CAPZA2 capping actin protein of muscle Z-line alpha subunit 2 protein-coding gene gene with protein product Approved 7q31.2 07q31.2 "CAPZ|CAPPA2" F-actin capping protein alpha-2 subunit capping protein (actin filament) muscle Z-line, alpha 2 1994-05-26 2016-02-03 2016-10-05 830 ENSG00000198898 OTTHUMG00000023185 uc003vil.4 NM_006136 CCDS5768 P47755 MGI:106222 RGD:1549770 CAPZA2 601571 +HGNC:24205 CAPZA3 capping actin protein of muscle Z-line alpha subunit 3 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "Gsg3|CAPPA3" capping protein (actin filament) muscle Z-line, alpha 3 2004-01-26 2016-02-03 2016-09-19 93661 ENSG00000177938 OTTHUMG00000169001 uc001rdy.4 AB053259 NM_033328 CCDS8681 Q96KX2 12029070 MGI:106221 RGD:2271 CAPZA3 608722 +HGNC:1491 CAPZB capping actin protein of muscle Z-line beta subunit protein-coding gene gene with protein product Approved 1p36.13 01p36.13 capping protein (actin filament) muscle Z-line, beta 1994-05-26 2016-02-03 2016-10-05 832 ENSG00000077549 OTTHUMG00000002556 uc001bce.5 U03271 XM_011542228 "CCDS41277|CCDS55579|CCDS72717|CCDS72718" P47756 MGI:104652 RGD:1359099 CAPZB 601572 +HGNC:16394 CARD6 caspase recruitment domain family member 6 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 CINCIN1 caspase recruitment domain family, member 6 Caspase recruitment domain containing 959 2001-08-13 2015-11-18 2015-11-18 84674 ENSG00000132357 OTTHUMG00000094775 uc003jmg.4 AF356193 XM_017009989 CCDS3935 Q9BX69 12775719 MGI:3032959 RGD:1305805 CARD6 609986 +HGNC:17057 CARD8 caspase recruitment domain family member 8 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "TUCAN|KIAA0955|CARDINAL|NDPP|Dakar" caspase recruitment domain family, member 8 Caspase recruitment domain containing 959 2003-12-03 2015-11-18 2016-04-25 22900 ENSG00000105483 OTTHUMG00000165047 uc061ark.1 AB023172 NM_014959 "CCDS12712|CCDS54287|CCDS54288|CCDS54289" Q9Y2G2 "10231032|11408476" RGD:1593294 CARD8 609051 S79.001 +HGNC:51408 CARD8-AS1 CARD8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.33 19q13.33 LOC100505812 2014-11-20 2014-11-20 100505812 ENSG00000268001 OTTHUMG00000183194 NR_040599 25392693 +HGNC:16391 CARD9 caspase recruitment domain family member 9 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 caspase recruitment domain family, member 9 Caspase recruitment domain containing 959 2001-08-13 2015-11-18 2016-10-12 64170 ENSG00000187796 OTTHUMG00000020925 uc004chg.4 AF311287 NM_052813 "CCDS6997|CCDS48057" Q9H257 11053425 MGI:2685628 RGD:708370 LRG_178|http://www.lrg-sequence.org/LRG/LRG_178 CARD9 607212 225286 +HGNC:16422 CARD10 caspase recruitment domain family member 10 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "CARMA3|BIMP1" caspase recruitment domain family, member 10 "Membrane associated guanylate kinases|Caspase recruitment domain containing" "904|959" 2002-09-19 2015-11-18 2015-11-18 29775 ENSG00000100065 OTTHUMG00000150592 uc062dxz.1 AF086324 NM_014550 CCDS13948 Q9BWT7 "11259443|11356195" MGI:2146012 RGD:1304949 CARD10 607209 +HGNC:16393 CARD11 caspase recruitment domain family member 11 protein-coding gene gene with protein product Approved 7p22.2 07p22.2 "CARMA1|BIMP3" "card-maguk protein 1|bcl10-interacting maguk protein 3" caspase recruitment domain family, member 11 "Membrane associated guanylate kinases|Caspase recruitment domain containing|PDZ domain containing" "904|959|1220" 2001-08-13 2015-11-18 2016-10-12 84433 ENSG00000198286 OTTHUMG00000023023 uc003smv.5 AF322641 NM_032415 CCDS5336 Q9BXL7 "11278692|11356195" MGI:1916978 RGD:2323211 LRG_729|http://www.lrg-sequence.org/LRG/LRG_729 CARD11 607210 333084 +HGNC:16446 CARD14 caspase recruitment domain family member 14 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "CARMA2|BIMP2" PSORS2 "psoriasis susceptibility 2|caspase recruitment domain family, member 14" "Membrane associated guanylate kinases|Caspase recruitment domain containing|PDZ domain containing" "904|959|1220" 2002-09-19 2015-11-18 2015-11-18 79092 ENSG00000141527 OTTHUMG00000177549 uc031res.2 AF322642 XM_017025057 "CCDS11768|CCDS58605" Q9BXL6 "11278692|11356195|22521418" MGI:2386258 RGD:1591135 CARD14 607211 304694 +HGNC:33701 CARD16 caspase recruitment domain family member 16 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "COP1|COP|PSEUDO-ICE" caspase recruitment domain family, member 16 Caspase recruitment domain containing 959 2008-09-15 2015-11-18 2016-10-05 114769 ENSG00000204397 OTTHUMG00000166157 uc001pip.2 XM_011542583 "CCDS31661|CCDS41705" Q5EG05 "11432859|11536016" CARD16 615680 +HGNC:33827 CARD17 caspase recruitment domain family member 17 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 INCA Inhibitory CARD caspase recruitment domain family, member 17 Caspase recruitment domain containing 959 2008-10-29 2015-11-18 2015-11-18 440068 ENSG00000255221 OTTHUMG00000166163 uc001pir.1 NM_001007232 CCDS31662 Q5XLA6 15383541 CARD17 609490 +HGNC:28861 CARD18 caspase recruitment domain family member 18 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "UNQ5804|ICEBERG|pseudo-ICE" caspase recruitment domain family, member 18 Caspase recruitment domain containing 959 2008-09-02 2015-11-18 2015-11-18 59082 ENSG00000255501 OTTHUMG00000166165 uc021qpy.2 AY358231 NM_021571 CCDS53705 P57730 11051551 CARD18 605354 +HGNC:28148 CARD19 caspase recruitment domain family member 19 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "MGC11115|bA370F5.1|BinCARD" Bcl10-interacting protein with CARD C9orf89 "chromosome 9 open reading frame 89|caspase recruitment domain family, member 19" Caspase recruitment domain containing 959 2004-02-19 2015-10-20 2015-11-18 2016-10-05 84270 ENSG00000165233 OTTHUMG00000020243 AK057716 NM_032310 CCDS6702 Q96LW7 15637807 MGI:1915730 RGD:1306058 +HGNC:14435 CARF calcium responsive transcription factor protein-coding gene gene with protein product Approved 2q33.2 02q33.2 "FLJ21579|CaRF|NYD-SP24" calcium-response factor ALS2CR8 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8 2001-01-26 2013-06-12 2013-06-12 2016-10-05 79800 ENSG00000138380 OTTHUMG00000154528 AB053309 NM_001104586 "CCDS42801|CCDS63091" Q8N187 "11586298|11832226" MGI:2182269 RGD:1306822 607586 +HGNC:17150 CARHSP1 calcium regulated heat stable protein 1 protein-coding gene gene with protein product Approved 16p13.2 16p13.2 "CRHSP-24|CSDC1" "calcium regulated heat stable protein 1 (24kD)|calcium regulated heat stable protein 1, 24kDa" 2002-06-11 2015-11-09 2015-11-09 23589 ENSG00000153048 OTTHUMG00000129695 uc031qvd.2 AF115345 NM_014316 CCDS10537 Q9Y2V2 9712905 MGI:1196368 RGD:708415 CARHSP1 616885 +HGNC:23393 CARM1 coactivator associated arginine methyltransferase 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 PRMT4 Protein arginine methyltransferases 691 2003-11-14 2015-11-17 2015-11-17 10498 ENSG00000142453 OTTHUMG00000180699 uc002mpz.4 AF055027 XM_032719 CCDS12250 Q86X55 "10381882|11724789" MGI:1913208 RGD:1305879 CARM1 603934 objectId:1255 +HGNC:23392 CARM1P1 coactivator associated arginine methyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 9p24.2 09p24.2 CARM1L coactivator associated arginine methyltransferase 1-like 2003-11-14 2010-10-11 2015-11-17 2015-11-17 100130873 ENSG00000227835 OTTHUMG00000019453 NG_009935 PGOHUM00000263531 +HGNC:21581 CARMIL1 capping protein regulator and myosin 1 linker 1 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "dJ501N12.1|FLJ20048|CARMIL" capping protein, Arp2/3, and Myosin-I Linker homolog 1 (Dictyostelium) "LRRC16|LRRC16A" "leucine rich repeat containing 16|leucine rich repeat containing 16A" 2003-06-25 2016-06-14 2016-06-14 2016-10-05 55604 ENSG00000079691 OTTHUMG00000014393 uc011djw.2 AK000055 NM_017640 CCDS54973 Q5VZK9 19846667 MGI:1915982 RGD:1306623 609593 +HGNC:27089 CARMIL2 capping protein regulator and myosin 1 linker 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 LRRC16C "RGD, leucine-rich repeat, tropomodulin and proline-rich containing protein|leucine rich repeat containing 16C" RLTPR RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing 2008-02-12 2016-04-22 2016-04-22 2016-06-14 146206 ENSG00000159753 uc002etn.4 AB113647 NM_001013838 "CCDS45513|CCDS81998" Q6F5E8 "15588584|19846667|26578515" MGI:2685431 RGD:1562390 610859 +HGNC:20272 CARMIL3 capping protein regulator and myosin 1 linker 3 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "BC008134|crml-1" "C14orf121|LRRC16B" "chromosome 14 open reading frame 121|leucine rich repeat containing 16B" 2003-01-17 2016-04-22 2016-04-22 2016-06-14 90668 ENSG00000186648 OTTHUMG00000172023 uc001wlj.3 AI017934 NM_138360 CCDS32054 Q8ND23 19846667 MGI:2448573 RGD:1359120 614716 +HGNC:42872 CARMN cardiac mesoderm enhancer-associated non-coding RNA non-coding RNA RNA, long non-coding Approved 5q32 05q32 CARMEN MIR143HG "MIR143 host gene (non-protein coding)|MIR143 host gene" Long non-coding RNAs 788 2011-09-02 2015-11-05 2015-11-05 2015-11-05 728264 ENSG00000249669 OTTHUMG00000163464 uc063iod.1 NR_105059 26423156 MGI:4439832 RGD:10401674 +HGNC:23435 CARNMT1 carnosine N-methyltransferase 1 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 FLJ25795 C9orf41 chromosome 9 open reading frame 41 2003-11-18 2015-07-10 2015-07-10 2016-10-05 138199 ENSG00000156017 OTTHUMG00000020032 AK098661 NM_152420 CCDS6649 Q8N4J0 26001783 MGI:1914633 RGD:1311863 616552 +HGNC:29268 CARNS1 carnosine synthase 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 KIAA1394 ATPGD1 ATP-grasp domain containing 1 2008-10-21 2010-03-25 2010-03-25 2016-10-05 57571 ENSG00000172508 OTTHUMG00000167672 uc058egc.1 NM_020811 "CCDS44658|CCDS53667" A5YM72 20097752 MGI:2147595 RGD:1308234 CARNS1 613368 +HGNC:1493 CARS cysteinyl-tRNA synthetase protein-coding gene gene with protein product Approved 11p15.4 11p15.4 CARS1 cysteine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class I 131 1992-12-10 2016-10-05 833 ENSG00000110619 OTTHUMG00000010927 uc001lxh.4 AF288207 NM_001751 "CCDS7742|CCDS41600|CCDS41602" P49589 8468064 MGI:1351477 RGD:1310747 CARS 123859 357449 6.1.1.16 +HGNC:40125 CARS-AS1 CARS antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 CARS antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100852407 ENSG00000247473 OTTHUMG00000165360 uc001lxi.1 AK093033 +HGNC:25695 CARS2 cysteinyl-tRNA synthetase 2, mitochondrial (putative) protein-coding gene gene with protein product Approved 13q34 13q34 FLJ12118 cysteine tRNA ligase 2, mitochondrial (putative) Aminoacyl tRNA synthetases, Class I 131 2007-01-24 2007-02-22 2014-11-18 79587 ENSG00000134905 OTTHUMG00000017347 uc001vrd.3 BC007220 NM_024537 CCDS9514 Q9HA77 15779907 MGI:1919191 RGD:1311612 CARS2 612800 6.1.1.16 +HGNC:50477 CARSP1 cysteinyl-tRNA synthetase pseudogene 1 pseudogene pseudogene Approved 15q23 15q23 2014-05-06 2014-05-06 100420042 ENSG00000271232 OTTHUMG00000184898 NG_025389 PGOHUM00000247154 +HGNC:50478 CARSP2 cysteinyl-tRNA synthetase pseudogene 2 pseudogene pseudogene Approved 8q23.3 08q23.3 2014-05-06 2014-05-06 106481707 ENSG00000253756 OTTHUMG00000164902 NG_043273 PGOHUM00000249489 +HGNC:24323 CARTPT CART prepropeptide protein-coding gene gene with protein product Approved 5q13.2 05q13.2 CART cocaine and amphetamine regulated transcript 2006-10-04 2014-11-19 9607 ENSG00000164326 OTTHUMG00000131261 uc003kbv.2 U16826 NM_004291 CCDS4011 Q16568 "9590691|8647455" MGI:1351330 RGD:2272 CARTPT 602606 +HGNC:29599 CASC1 cancer susceptibility candidate 1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "LAS1|FLJ10921|PPP1R54" protein phosphatase 1, regulatory subunit 54 Protein phosphatase 1 regulatory subunits 694 2004-01-13 2014-11-19 55259 ENSG00000118307 OTTHUMG00000150195 uc001rgk.4 AK093102 NM_018272 "CCDS31759|CCDS41762|CCDS41763|CCDS55810|CCDS55811" Q6TDU7 14583591 MGI:2444480 RGD:1311213 CASC1 616906 +HGNC:22933 CASC2 cancer susceptibility candidate 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 10q26.11 10q26.11 C10orf5 "chromosome 10 open reading frame 5|cancer susceptibility candidate 2" 2003-07-23 2004-01-23 2011-08-30 2016-10-05 255082 ENSG00000177640 OTTHUMG00000019127 uc001ldm.5 AJ535620 NR_026939 "Q6XLA1|Q8IU53" 608598 +HGNC:17040 CASC3 cancer susceptibility candidate 3 protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "MLN51|BTZ" Exon junction complex 1238 2004-02-11 2016-04-05 22794 ENSG00000108349 OTTHUMG00000133323 uc002hue.4 X80199 NM_007359 CCDS11362 O15234 "7490069|18332872" MGI:2179723 RGD:628766 CASC3 606504 +HGNC:24892 CASC4 cancer susceptibility candidate 4 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "H63|DKFZp459F1927" 2005-07-11 2016-10-05 113201 ENSG00000166734 OTTHUMG00000131133 uc001ztp.4 AF103804 NM_138423 "CCDS10108|CCDS10109" Q6P4E1 10497265 MGI:2443129 RGD:1305985 CASC4 +HGNC:39251 CASC4P1 cancer susceptibility candidate 4 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 2010-11-24 2011-08-18 100420689 ENSG00000238132 OTTHUMG00000016496 NG_024833 PGOHUM00000248312 +HGNC:49076 CASC6 cancer susceptibility candidate 6 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6q15 06q15 2013-08-19 2013-08-22 101929083 ENSG00000224944 OTTHUMG00000015221 BC037927 NR_104154 +HGNC:48905 CASC7 cancer susceptibility candidate 7 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 LINC00980 long intergenic non-protein coding RNA 980 2013-07-01 2015-01-29 286109 ENSG00000259758 OTTHUMG00000172354 "AK092172|BC033700" +HGNC:45129 CASC8 cancer susceptibility candidate 8 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "LINC00860|CARLo-1" long intergenic non-protein coding RNA 860 Long non-coding RNAs 788 2013-07-01 2015-07-30 727677 ENSG00000246228 OTTHUMG00000187906 NR_024393 24594601 +HGNC:48906 CASC9 cancer susceptibility candidate 9 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q21.13 08q21.13 "LINC00981|ESCCAL-1" "long intergenic non-protein coding RNA 981|esophageal squamous cell carcinoma associated lncRNA-1" 2013-07-01 2016-10-05 101805492 ENSG00000249395 OTTHUMG00000164547 BC062758 NR_103848 25885227 +HGNC:31448 CASC10 cancer susceptibility candidate 10 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 bA418C1.3 C10orf114 chromosome 10 open reading frame 114 2004-05-27 2013-07-17 2013-07-17 2014-11-19 399726 ENSG00000204682 OTTHUMG00000017795 BC040880 NM_001010911 CCDS31163 Q5T4H9 21804547 +HGNC:48939 CASC11 cancer susceptibility candidate 11 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "TCONS_00014535|LINC00990|CARLo-7" long intergenic non-protein coding RNA 990 Long non-coding RNAs 788 2013-07-17 2013-07-17 2014-07-18 100270680 ENSG00000249375 OTTHUMG00000164870 BC042052 NR_117102 24594601 +HGNC:28245 CASC15 cancer susceptibility candidate 15 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p22.3 06p22.3 LINC00340 long intergenic non-protein coding RNA 340 Long non-coding RNAs 788 2011-08-10 2013-08-22 2013-08-22 2015-07-31 401237 ENSG00000272168 OTTHUMG00000014345 AK026189 NR_015410 "26016895|26100672" 616610 +HGNC:48608 CASC16 cancer susceptibility candidate 16 (non-protein coding) non-coding RNA RNA, long non-coding Approved 16q12.1-q12.2 16q12.1-q12.2 LOC643714 LINC00918 long intergenic non-protein coding RNA 918 2013-05-24 2013-07-17 2013-07-17 2016-10-11 643714 ENSG00000249231 OTTHUMG00000173223 "BC034767|DB462404|DB523777" NR_033920 +HGNC:43911 CASC17 cancer susceptibility candidate 17 (non-protein coding) non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 LINC00600 long intergenic non-protein coding RNA 600 2013-08-19 2013-08-22 101928165 ENSG00000260785 OTTHUMG00000176079 BC039327 NR_104152 +HGNC:49463 CASC18 cancer susceptibility candidate 18 (non-protein coding) non-coding RNA RNA, long non-coding Approved 12q23.3 12q23.3 LOC101929110 2013-12-03 2013-12-06 101929110 ENSG00000257859 OTTHUMG00000169725 AK001551 NR_110111 +HGNC:49476 CASC19 cancer susceptibility candidate 19 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 CARLo-6 LINC01245 long intergenic non-protein coding RNA 1245 Long non-coding RNAs 788 2013-12-18 2014-11-19 103021165 ENSG00000254166 OTTHUMG00000165064 "BI223175|JX003871|DW435273" NR_120364 24594601 +HGNC:49477 CASC20 cancer susceptibility candidate 20 (non-protein coding) non-coding RNA RNA, long non-coding Approved 20p12.3 20p12.3 2013-12-14 2013-12-18 101929244 ENSG00000229876 OTTHUMG00000031831 AY007089 NR_109953 +HGNC:49836 CASC21 cancer susceptibility candidate 21 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 CARLo-2 LINC01244 long intergenic non-protein coding RNA 1244 Long non-coding RNAs 788 2014-03-09 2014-03-13 2014-03-13 2014-07-18 103021164 ENSG00000253929 OTTHUMG00000165067 "JX003867|CB104826" NR_117099 24594601 +HGNC:50627 CASC22 cancer susceptibility candidate 22 (non-protein coding) non-coding RNA RNA, long non-coding Approved 16q12.1 16q12.1 "TCONS_00024290|LincRNA-ENST00000515084" LINC01373 long intergenic non-protein coding RNA 1373 Long non-coding RNAs 788 2014-05-30 2014-06-18 2014-06-18 2014-07-18 283854 ENSG00000260887 OTTHUMG00000173239 AK093211 NR_135281 24879036 +HGNC:50865 CASC23 cancer susceptibility candidate 23 (non-protein coding) non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 LINC01464 long intergenic non-protein coding RNA 1464 2014-07-14 2014-07-29 103581031 ENSG00000255420 OTTHUMG00000165689 BC027619 NR_125366 +HGNC:16014 CASD1 CAS1 domain containing 1 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "FLJ21213|FLJ21879|C7orf12" chromosome 7 open reading frame 12 2006-03-07 2016-10-05 64921 ENSG00000127995 OTTHUMG00000023356 uc003uni.5 AF355594 NM_022900 CCDS5636 Q96PB1 "11703667|11528394" MGI:2384865 RGD:1596912 CASD1 611686 +HGNC:1497 CASK calcium/calmodulin dependent serine protein kinase protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "LIN2|CAGH39|FGS4" TNRC8 "trinucleotide repeat containing 8|calcium/calmodulin-dependent serine protein kinase (MAGUK family)" "Trinucleotide repeat containing|Membrane associated guanylate kinases|PDZ domain containing" "775|904|1220" 1998-09-25 2016-05-24 2016-05-24 8573 ENSG00000147044 OTTHUMG00000021378 uc004dfl.5 AF035582 NM_003688 "CCDS14257|CCDS48094|CCDS48095" O14936 9722958 MGI:1309489 RGD:62004 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CASK CASK 300172 165976 objectId:1959 +HGNC:40126 CASK-AS1 CASK antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp11.4 Xp11.4 CASK antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873928 ENSG00000233033 OTTHUMG00000021372 uc064yqt.1 +HGNC:20879 CASKIN1 CASK interacting protein 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "KIAA1306|ANKS5A" "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 2003-04-16 2015-08-26 57524 ENSG00000167971 OTTHUMG00000177045 uc010bsg.2 AF451977 NM_020764 CCDS42103 Q8WXD9 12040031 MGI:2442952 RGD:620191 CASKIN1 612184 +HGNC:18200 CASKIN2 CASK interacting protein 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "KIAA1139|FLJ21609|ANKS5B" "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 2003-04-16 2015-08-26 57513 ENSG00000177303 OTTHUMG00000179683 uc002joc.5 AB032965 NM_020753 "CCDS11723|CCDS45775" Q8WXE0 12040031 MGI:2157062 RGD:1309738 CASKIN2 612185 +HGNC:1498 CASKP1 calcium/calmodulin dependent serine protein kinase pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 CASKP "calcium/calmodulin-dependent serine protein kinase (MAGUK family) pseudogene|calcium/calmodulin-dependent serine protein kinase (MAGUK family) pseudogene 1|calcium/calmodulin dependent serine protein kinase (MAGUK family) pseudogene 1" 1999-05-17 2010-03-17 2016-06-08 2016-10-05 10029 ENSG00000234059 OTTHUMG00000036325 NG_002805.5 +HGNC:1499 CASP1 caspase 1 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 ICE "caspase-1|interleukin 1, beta, convertase" IL1BC "caspase 1, apoptosis-related cysteine protease (interleukin 1, beta, convertase)|caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase)|caspase 1, apoptosis-related cysteine peptidase" "Caspases|Caspase recruitment domain containing" "468|959" 1992-05-07 2015-11-12 2016-10-05 834 ENSG00000137752 OTTHUMG00000048072 uc021qpp.3 U13697 NM_033292 "CCDS8329|CCDS8330|CCDS8331|CCDS8332|CCDS53704" P29466 "1373520|9250871" MGI:96544 RGD:2274 CASP1 147678 C14.001 objectId:1617 3.4.22.36 +HGNC:43775 CASP1P1 caspase 1 pseudogene 1 pseudogene pseudogene Approved 11q22.3 11q22.3 caspase 1, apoptosis-related cysteine peptidase pseudogene 1 2012-02-24 2015-11-12 2015-11-12 100874457 ENSG00000255430 OTTHUMG00000166164 NG_032566 PGOHUM00000242460 +HGNC:43776 CASP1P2 caspase 1 pseudogene 2 pseudogene pseudogene Approved 11q22.3 11q22.3 caspase 1, apoptosis-related cysteine peptidase pseudogene 2 2012-02-24 2015-11-12 2015-11-12 440067 ENSG00000254750 OTTHUMG00000166162 NR_131905 PGOHUM00000257862 +HGNC:43777 CASP1P3 caspase 1 pseudogene 3 pseudogene pseudogene Approved 11q22.3 11q22.3 caspase 1, apoptosis-related cysteine peptidase pseudogene 3 2012-02-24 2015-11-12 2015-11-12 100422634 NG_024409 PGOHUM00000257863 +HGNC:1503 CASP2 caspase 2 protein-coding gene gene with protein product Approved 7q34 07q34 "ICH1|PPP1R57|MGC2181" protein phosphatase 1, regulatory subunit 57 NEDD2 "neural precursor cell expressed, developmentally down-regulated 2|caspase 2, apoptosis-related cysteine peptidase" "Caspases|Protein phosphatase 1 regulatory subunits|Caspase recruitment domain containing" "468|694|959" 1994-01-21 2015-11-12 2016-10-05 835 ENSG00000106144 OTTHUMG00000023641 uc003wco.3 "AK096245|BC002427|BM998653|BX537669|CB988674|U13021" NM_032982 "CCDS5879|CCDS47733" P42575 "7789948|8780721|19075813" MGI:97295 RGD:69274 CASP2 600639 C14.006 objectId:1618 3.4.22.55 +HGNC:1504 CASP3 caspase 3 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "CPP32|CPP32B|Yama|apopain" "caspase 3, apoptosis-related cysteine protease|caspase 3, apoptosis-related cysteine peptidase" Caspases 468 1996-07-22 2015-11-12 2016-10-05 836 ENSG00000164305 OTTHUMG00000133681 uc003iwi.4 BC016926 NM_004346 CCDS3836 P42574 8780721 MGI:107739 RGD:2275 CASP3 600636 C14.003 objectId:1619 3.4.22.56 +HGNC:43596 CASP3P1 caspase 3 pseudogene 1 pseudogene pseudogene Approved 1p31.1 01p31.1 caspase 3, apoptosis-related cysteine peptidase pseudogene 1 2011-11-22 2015-11-12 2015-11-12 100131616 ENSG00000237033 OTTHUMG00000009345 NG_022722 PGOHUM00000244069 +HGNC:1505 CASP4 caspase 4 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "ICE(rel)II|ICH-2|TX" "caspase 4, apoptosis-related cysteine protease|caspase 4, apoptosis-related cysteine peptidase" "Caspases|Caspase recruitment domain containing" "468|959" 1996-07-22 2015-11-12 2016-10-05 837 ENSG00000196954 OTTHUMG00000166078 uc001pid.2 U25804 NM_001225 "CCDS8327|CCDS41704" P49662 "7797510|9250871" MGI:107700 RGD:621757 CASP4 602664 C14.007 objectId:1620 3.4.22.57 +HGNC:1506 CASP5 caspase 5 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 ICE(rel)III "caspase 5, apoptosis-related cysteine protease|caspase 5, apoptosis-related cysteine peptidase" "Caspases|Caspase recruitment domain containing" "468|959" 1996-09-13 2015-11-12 2016-10-05 838 ENSG00000137757 OTTHUMG00000048073 uc010rva.2 NM_004347 "CCDS8328|CCDS44718|CCDS44719|CCDS44720" P51878 "7797592|9250871" CASP5 602665 C14.008 objectId:1621 3.4.22.58 +HGNC:1507 CASP6 caspase 6 protein-coding gene gene with protein product Approved 4q25 04q25 MCH2 "caspase 6, apoptosis-related cysteine protease|caspase 6, apoptosis-related cysteine peptidase" Caspases 468 1996-07-22 2015-11-12 2015-11-12 839 ENSG00000138794 OTTHUMG00000131914 uc003hzn.2 U20536 NM_001226 "CCDS3684|CCDS3685" P55212 "8780721|7796396" MGI:1312921 RGD:70967 CASP6 601532 C14.005 objectId:1622 3.4.22.59 +HGNC:1508 CASP7 caspase 7 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "MCH3|CMH-1|ICE-LAP3" "caspase 7, apoptosis-related cysteine protease|caspase 7, apoptosis-related cysteine peptidase" Caspases 468 1996-07-22 2015-11-12 2016-10-05 840 ENSG00000165806 OTTHUMG00000019076 uc010qsa.4 U37448 NM_033338 "CCDS7580|CCDS7581|CCDS7582|CCDS58096|CCDS73200" P55210 "8521391|8576161" MGI:109383 RGD:620944 CASP7 601761 C14.004 objectId:1623 3.4.22.60 +HGNC:1509 CASP8 caspase 8 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "MCH5|MACH|FLICE|Casp-8" "caspase 8, apoptosis-related cysteine protease|caspase 8, apoptosis-related cysteine peptidase" "Caspases|Death effector domain containing|Ripoptosome|Death inducing signaling complex " "468|1019|1340|1342" 1996-11-11 2015-11-12 2016-10-12 841 ENSG00000064012 OTTHUMG00000132821 uc002uxt.2 U60520 NM_001228 "CCDS2342|CCDS2343|CCDS2345|CCDS42798|CCDS42799" Q14790 "8681376|8681377" MGI:1261423 RGD:620945 "CASP8base: Mutation registry for Caspase 8 deficiency|http://structure.bmc.lu.se/idbase/CASP8base/|LRG_34|http://www.lrg-sequence.org/LRG/LRG_34" CASP8 601763 138851 C14.009 objectId:1624 3.4.22.61 +HGNC:1510 CASP8AP2 caspase 8 associated protein 2 protein-coding gene gene with protein product Approved 6q15 06q15 "FLASH|CED-4|RIP25|FLJ11208|KIAA1315" FLICE-associated huge protein CASP8 associated protein 2 1999-12-10 2008-10-30 2014-11-19 9994 ENSG00000118412 OTTHUMG00000015212 uc063qcj.1 AB037736 NM_001137667 Q9UKL3 "10235259|17245429|17003126" MGI:1349399 RGD:1305771 CASP8AP2 606880 +HGNC:1511 CASP9 caspase 9 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "MCH6|ICE-LAP6|APAF-3|PPP1R56" protein phosphatase 1, regulatory subunit 56 "caspase 9, apoptosis-related cysteine protease|caspase 9, apoptosis-related cysteine peptidase" "Caspases|Protein phosphatase 1 regulatory subunits|Caspase recruitment domain containing|Apoptosome" "468|694|959|1341" 1996-11-11 2015-11-12 2016-04-25 842 ENSG00000132906 OTTHUMG00000002256 uc001awn.5 U60521 NM_032996 "CCDS158|CCDS159|CCDS59995" P55211 "8663294|9390557" MGI:1277950 RGD:61867 CASP9 602234 C14.010 objectId:1625 3.4.22.62 +HGNC:1500 CASP10 caspase 10 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 MCH4 "caspase 10, apoptosis-related cysteine protease|caspase 10, apoptosis-related cysteine peptidase" "Caspases|Death effector domain containing|Death inducing signaling complex " "468|1019|1342" 1997-04-21 2015-11-12 2016-10-12 843 ENSG00000003400 OTTHUMG00000132818 uc002uxj.2 U60519 NM_032977 "CCDS2338|CCDS2339|CCDS2340|CCDS56159|CCDS56160|CCDS77506" Q92851 8755496 "CASP10base: Mutation registry for Autoimmune lymphoproliferative syndrome, type II (ALPS2)|http://structure.bmc.lu.se/idbase/CASP10base/|LRG_33|http://www.lrg-sequence.org/LRG/LRG_33" CASP10 601762 119179 C14.011 objectId:1626 3.4.22.63 +HGNC:19004 CASP12 caspase 12 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q22.3 11q22.3 CASP12P1 "caspase 12 pseudogene 1|caspase 12" "Caspases|Caspase recruitment domain containing" "468|959" 2002-07-25 2006-02-17 2007-12-17 2015-08-26 100506742 ENSG00000204403 OTTHUMG00000154965 uc031ydr.1 AF464191 NM_001191016 Q6UXS9 "12054529|9038361|16917906|16532395" MGI:1312922 RGD:621758 CASP12 608633 C14.P01 +HGNC:1502 CASP14 caspase 14 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "MICE|MGC119078|MGC119079" apoptosis-related cysteine protease "caspase 14, apoptosis-related cysteine protease|caspase 14, apoptosis-related cysteine peptidase" Caspases 468 1998-11-09 2015-11-12 2016-10-05 23581 ENSG00000105141 OTTHUMG00000183205 uc010dzv.3 NM_012114 CCDS12323 P31944 "10203698|9792675|15301553" MGI:1335092 RGD:1311781 CASP14 605848 C14.018 objectId:1627 3.4.22.- +HGNC:27290 CASP16P caspase 16, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 CASP16 caspase 16, apoptosis-related cysteine peptidase (putative) Caspases 468 2012-02-29 2015-07-13 2015-07-13 2015-11-04 197350 ENSG00000228146 OTTHUMG00000177520 XM_003403459 18281271 MGI:3646305 RGD:1588238 +HGNC:1512 CASQ1 calsequestrin 1 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 PDIB1 "calsequestrin 1, fast-twitch, skeletal muscle|calmitine" CASQ calsequestrin 1 (fast-twitch, skeletal muscle) Protein disulfide isomerases 692 1990-08-23 2015-11-30 2016-10-05 844 ENSG00000143318 OTTHUMG00000031607 uc010pja.3 S73775 NM_001231 CCDS1198 P31415 "8406504|2321095" MGI:1309468 RGD:1586677 CASQ1 114250 413011 +HGNC:1513 CASQ2 calsequestrin 2 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 PDIB2 calsequestrin 2 (cardiac muscle) Protein disulfide isomerases 692 1992-11-05 2015-11-30 2016-10-12 845 ENSG00000118729 OTTHUMG00000011970 uc001efx.5 BC022288 NM_001232 CCDS884 O14958 8406504 MGI:1309469 RGD:2276 LRG_404|http://www.lrg-sequence.org/LRG/LRG_404 CASQ2 114251 119182 +HGNC:1514 CASR calcium sensing receptor protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "FHH|NSHPT|GPRC2A" severe neonatal hyperparathyroidism "HHC|HHC1" "hypocalciuric hypercalcemia 1|calcium-sensing receptor" Calcium sensing receptors 279 1992-12-04 2016-01-26 2016-01-26 846 ENSG00000036828 OTTHUMG00000159491 uc003eev.5 U20760 NM_000388 "CCDS3010|CCDS54632" P41180 7677761 MGI:1351351 RGD:2277 CASRdb Calcium Sensing Receptor Locus Mutation Database|http://www.casrdb.mcgill.ca CASR 601199 119185 objectId:54 +HGNC:15878 CASS4 Cas scaffolding protein family member 4 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 "HEFL|HEPL" "HEF-like protein|HEF1-Efs-p130Cas-like" C20orf32 chromosome 20 open reading frame 32 Cas scaffolding proteins 469 2001-06-21 2008-04-15 2008-04-14 2016-04-05 57091 ENSG00000087589 OTTHUMG00000032788 uc002xxp.3 AJ276678 NM_020356 "CCDS33492|CCDS54475" Q9NQ75 "26119091|24962474" MGI:2444482 RGD:1310643 CASS4 +HGNC:1515 CAST calpastatin protein-coding gene gene with protein product Approved 5q15 05q15 1990-07-03 2015-08-24 831 ENSG00000153113 OTTHUMG00000128413 uc003kmd.4 AF327443 NM_173062 "CCDS4082|CCDS54882|CCDS54883|CCDS75279|CCDS83017" P20810 "8340353|14685690|15820218" MGI:1098236 RGD:2278 CAST 114090 448710 +HGNC:26002 CASZ1 castor zinc finger 1 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "FLJ20321|ZNF693|castor|cst|SRG" "zinc finger protein 693|survival related gene" castor homolog 1, zinc finger (Drosophila) Zinc fingers C2H2-type 28 2005-05-13 2007-02-02 2014-11-19 54897 ENSG00000130940 OTTHUMG00000002035 uc001aro.6 AK000328 NM_017766 "CCDS120|CCDS41246" Q86V15 "16631614|21252912" MGI:1196251 RGD:1563533 CASZ1 609895 +HGNC:1516 CAT catalase protein-coding gene gene with protein product Approved 11p13 11p13 2001-06-22 2014-11-19 847 ENSG00000121691 OTTHUMG00000044353 uc001mvm.4 AY028632 NM_001752 CCDS7891 P04040 MGI:88271 RGD:2279 CAT 115500 119192 1.11.1.6 +HGNC:1518 CATHL1L entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-11-07 +HGNC:1524 CATHLP entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-11-07 +HGNC:25062 CATIP ciliogenesis associated TTC17 interacting protein protein-coding gene gene with protein product Approved 2q35 02q35 MGC50811 C2orf62 chromosome 2 open reading frame 62 2007-07-10 2014-02-06 2014-02-06 2014-11-19 375307 ENSG00000158428 OTTHUMG00000133106 BC052750 NM_198559 CCDS2414 Q7Z7H3 24475127 MGI:2685062 RGD:1596071 +HGNC:41080 CATIP-AS1 CATIP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q35 02q35 2014-02-06 2014-11-19 101928513 ENSG00000225062 OTTHUMG00000155067 BC038211 NR_110573 +HGNC:41079 CATIP-AS2 CATIP antisense RNA 2 non-coding RNA RNA, long non-coding Approved 2q35 02q35 2014-02-06 2014-11-19 103689911 ENSG00000237281 OTTHUMG00000155145 CD672221 NR_125777 +HGNC:1525 CATR1 CATR tumorigenicity conversion 1 other unknown Approved 7q32 07q32 1995-11-14 2013-03-14 856 U25433 Q13166 7604004 600676 +HGNC:17116 CATSPER1 cation channel sperm associated 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 CATSPER cation channel, sperm associated 1 Cation channels sperm associated 186 2002-06-20 2016-02-04 2016-10-05 117144 ENSG00000175294 OTTHUMG00000166668 uc001ogt.3 AF407333 NM_053054 CCDS8127 Q8NEC5 "11675491|11595941|16382101" MGI:2179947 RGD:1593515 CATSPER1 606389 279661 objectId:388 +HGNC:18810 CATSPER2 cation channel sperm associated 2 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 cation channel, sperm associated 2 Cation channels sperm associated 186 2002-06-20 2016-02-04 2016-02-04 117155 ENSG00000166762 OTTHUMG00000059902 uc001zsh.5 AF411817 NM_054020 "CCDS10099|CCDS32216|CCDS73714" Q96P56 "11675491|16382101" MGI:2387404 RGD:1307620 CATSPER2 607249 159339 objectId:389 +HGNC:31054 CATSPER2P1 cation channel sperm associated 2 pseudogene 1 pseudogene pseudogene Approved 15q15.3 15q15.3 cation channel, sperm associated 2 pseudogene 1 2006-02-10 2016-02-04 2016-02-04 440278 ENSG00000205771 OTTHUMG00000059938 BC066967 NR_002318 PGOHUM00000246770 +HGNC:20819 CATSPER3 cation channel sperm associated 3 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 CACRC cation channel, sperm associated 3 Cation channels sperm associated 186 2003-10-17 2016-02-04 2016-10-05 347732 ENSG00000152705 OTTHUMG00000129137 uc003lag.3 AF432876 NM_178019 CCDS4181 Q86XQ3 "12646162|12932298|17227845|16382101" MGI:1924106 RGD:1305700 CATSPER3 609120 objectId:390 +HGNC:23220 CATSPER4 cation channel sperm associated 4 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 cation channel, sperm associated 4 Cation channels sperm associated 186 2003-10-17 2016-02-04 2016-10-05 378807 ENSG00000188782 OTTHUMG00000003383 uc010oez.3 BN000273 NM_198137 CCDS30645 Q7RTX7 "12932298|17227845|16382101" MGI:3043288 RGD:1565213 CATSPER4 609121 objectId:391 +HGNC:20500 CATSPERB cation channel sperm associated auxiliary subunit beta protein-coding gene gene with protein product Approved 14q32.12 14q32.12 FLJ14298 C14orf161 "chromosome 14 open reading frame 161|cation channel, sperm-associated, beta|catsper channel auxiliary subunit beta" Cation channels sperm associated 186 2003-10-02 2007-10-18 2016-02-04 2016-02-04 79820 ENSG00000133962 OTTHUMG00000171118 uc001xzs.2 AK024360 NM_024764 CCDS32142 Q9H7T0 17478420 MGI:2443988 RGD:6500065 CATSPERB 611169 objectId:2326 +HGNC:28598 CATSPERD cation channel sperm associated auxiliary subunit delta protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC39581 TMEM146 "transmembrane protein 146|catsper channel auxiliary subunit delta" Cation channels sperm associated 186 2006-03-30 2012-02-22 2016-02-04 2016-02-04 257062 ENSG00000174898 OTTHUMG00000143036 uc002mda.4 BC043005 NM_152784 CCDS12149 Q86XM0 21224844 MGI:2147030 RGD:1594167 CATSPERD +HGNC:25243 CATSPERG cation channel sperm associated auxiliary subunit gamma protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "DKFZp434A1022|FLJ46353" C19orf15 "chromosome 19 open reading frame 15|cation channel, sperm-associated, gamma|catsper channel auxiliary subunit gamma" Cation channels sperm associated 186 2004-02-11 2009-07-17 2016-02-04 2016-10-05 57828 ENSG00000099338 OTTHUMG00000153223 uc002oih.5 AK128220 NM_021185 "CCDS12514|CCDS82346" Q6ZRH7 19516020 "MGI:1923968|MGI:2443617" RGD:1310942 CATSPERG 613452 +HGNC:1527 CAV1 caveolin 1 protein-coding gene gene with protein product Approved 7q31.2 07q31.2 CAV "caveolin 1, caveolae protein, 22kD|caveolin 1, caveolae protein, 22kDa" 1993-11-02 2015-11-09 2016-10-05 857 ENSG00000105974 OTTHUMG00000023413 uc003vif.3 AF125348 NM_001753 "CCDS5767|CCDS55156" Q03135 10087206 MGI:102709 RGD:2280 CAV1 601047 171064 +HGNC:1528 CAV2 caveolin 2 protein-coding gene gene with protein product Approved 7q31.2 07q31.2 CAV 1998-03-02 2016-10-05 858 ENSG00000105971 OTTHUMG00000023414 uc003vid.4 AF035752 NM_001233 "CCDS5765|CCDS5766" P51636 "8552590|10087206" MGI:107571 RGD:620348 CAV2 601048 +HGNC:1529 CAV3 caveolin 3 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "VIP-21|LGMD1C|VIP21|LQT9" M-caveolin 1998-05-14 2016-10-12 859 ENSG00000182533 OTTHUMG00000090519 uc003brb.3 AF043101 NM_033337 CCDS2569 P56539 "9536092|9537420" MGI:107570 RGD:2281 "Limb-Girdle Muscular Dystrophy type 1C|http://www.LOVD.nl/CAV3|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=CAV3|CAV3 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=CAV3|LRG_329|http://www.lrg-sequence.org/LRG/LRG_329" CAV3 601253 119194 +HGNC:28617 CBARP CACN beta subunit associated regulatory protein protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MGC40084|DOS|BARP" "downstream of STK11|VGCC beta-anchoring and -regulatory protein" C19orf26 "chromosome 19 open reading frame 26|calcium channel, voltage-dependent, beta subunit associated regulatory protein" 2004-03-17 2015-07-16 2016-02-05 2016-04-25 255057 ENSG00000099625 OTTHUMG00000180141 BC028156 NM_152769 CCDS12057 Q8N350 24751537 MGI:1354170 RGD:1307185 +HGNC:1536 CBFA2T2 CBFA2/RUNX1 translocation partner 2 protein-coding gene gene with protein product Approved 20q11.21-q11.22 20q11.21-q11.22 "MTGR1|ZMYND3" core-binding factor, runt domain, alpha subunit 2; translocated to, 2 Zinc fingers MYND-type 87 1999-05-07 2016-03-21 2016-10-11 9139 ENSG00000078699 OTTHUMG00000032261 uc002wze.2 AF052210 NM_001032999 "CCDS13221|CCDS46590" O43439 9790752 MGI:1333833 RGD:1309088 CBFA2T2 603672 +HGNC:1537 CBFA2T3 CBFA2/RUNX1 translocation partner 3 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "MTGR2|ZMYND4|MTG16|RUNX1T3|ETO2" myeloid translocation gene 8 and 16b core-binding factor, runt domain, alpha subunit 2; translocated to, 3 "Zinc fingers MYND-type|A-kinase anchoring proteins" "87|396" 1998-08-13 2016-03-21 2016-10-05 863 ENSG00000129993 OTTHUMG00000137864 uc002fmm.3 AF052213 NM_005187 "CCDS10972|CCDS10973" O75081 "9790752|20150326" MGI:1338013 RGD:1310547 CBFA2T3 603870 331749 +HGNC:1539 CBFB core-binding factor beta subunit protein-coding gene gene with protein product Approved 16q22.1 16q22.1 PEBP2B core-binding factor, beta subunit 1993-12-07 2016-07-14 2016-07-14 865 ENSG00000067955 OTTHUMG00000137520 uc002era.4 BC018509 NM_001755 "CCDS10827|CCDS45508" Q13951 "8351518|7587111" MGI:99851 RGD:620493 CBFB 121360 171659 +HGNC:1541 CBL Cbl proto-oncogene protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "RNF55|c-Cbl" oncogene CBL2 CBL2 "Cas-Br-M (murine) ecotropic retroviral transforming sequence|Cbl proto-oncogene, E3 ubiquitin protein ligase" Ring finger proteins 58 1989-06-30 2016-04-26 2016-10-12 867 ENSG00000110395 OTTHUMG00000166170 uc001pwe.6 X57110 NM_005188 CCDS8418 P22681 2013228 MGI:88279 RGD:1561386 LRG_608|http://www.lrg-sequence.org/LRG/LRG_608 CBL 165360 242915 +HGNC:1542 CBLB Cbl proto-oncogene B protein-coding gene gene with protein product Approved 3q13.11 03q13.11 "RNF56|Cbl-b" "Cas-Br-M (murine) ectropic retroviral transforming sequence b|Cas-Br-M (murine) ecotropic retroviral transforming sequence b|Cbl proto-oncogene B, E3 ubiquitin protein ligase" Ring finger proteins 58 1995-12-18 2016-04-26 2016-05-11 868 ENSG00000114423 OTTHUMG00000150654 uc003dwc.4 U26710 NM_170662 CCDS2948 Q13191 7784085 MGI:2146430 RGD:620535 CBLB 604491 +HGNC:15961 CBLC Cbl proto-oncogene C protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "CBL-3|CBL-SL|RNF57" "Cas-Br-M (murine) ectropic retroviral transforming sequence c|Cas-Br-M (murine) ecotropic retroviral transforming sequence c|Cbl proto-oncogene C, E3 ubiquitin protein ligase" Ring finger proteins 58 2001-06-25 2016-04-26 2016-10-05 23624 ENSG00000142273 OTTHUMG00000150715 uc002ozs.4 AB028645 NM_012116 "CCDS12643|CCDS46109" Q9ULV8 "10362357|10571044" MGI:1931457 RGD:1307651 CBLC 608453 +HGNC:21225 CBLL1 Cbl proto-oncogene like 1 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 "HAKAI|FLJ23109|RNF188" Casitas B-lineage lymphoma-like "Cas-Br-M (murine) ecotropic retroviral transforming sequence-like 1|Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase|Cbl proto-oncogene like 1, E3 ubiquitin protein ligase" Ring finger proteins 58 2003-07-21 2016-04-26 2016-04-26 79872 ENSG00000105879 OTTHUMG00000154809 uc003veq.4 AK026762 NM_024814 "CCDS5747|CCDS64754" Q75N03 "11836526|11944035" MGI:2144842 RGD:1310703 CBLL1 606872 +HGNC:1543 CBLN1 cerebellin 1 precursor protein-coding gene gene with protein product Approved 16q12.1 16q12.1 1995-03-06 2015-09-11 869 ENSG00000102924 OTTHUMG00000133148 uc002efq.4 M58583 NM_004352 CCDS10736 P23435 "7877445|1704129" MGI:88281 RGD:1562813 CBLN1 600432 +HGNC:1544 CBLN2 cerebellin 2 precursor protein-coding gene gene with protein product Approved 18q22.3 18q22.3 1995-03-06 2015-08-26 147381 ENSG00000141668 OTTHUMG00000132825 uc002lkv.3 BC035789 NM_182511 CCDS11999 Q8IUK8 7877445 MGI:88282 RGD:1309715 CBLN2 600433 +HGNC:20146 CBLN3 cerebellin 3 precursor protein-coding gene gene with protein product Approved 14q12 14q12 2002-12-18 2015-09-11 643866 ENSG00000139899 OTTHUMG00000171315 uc001wpg.5 AY359070 XM_115232 CCDS32057 Q6UW01 12975309 MGI:1889286 RGD:1563731 CBLN3 612978 +HGNC:16231 CBLN4 cerebellin 4 precursor protein-coding gene gene with protein product Approved 20q13.2 20q13.2 dJ885A10.1 CBLNL1 cerebellin precursor-like 1 2001-07-17 2004-08-19 2004-08-19 2016-10-05 140689 ENSG00000054803 OTTHUMG00000032782 uc002xxa.5 AY358527 NM_080617 CCDS13448 Q9NTU7 MGI:2154433 RGD:1589642 CBLN4 615029 +HGNC:1548 CBR1 carbonyl reductase 1 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 SDR21C1 short chain dehydrogenase/reductase family 21C, member 1 CBR Short chain dehydrogenase/reductase superfamily 743 1991-02-20 2016-10-05 873 ENSG00000159228 OTTHUMG00000086618 uc002yvb.3 NM_001757 "CCDS13641|CCDS68202" P16152 "8432528|19027726" MGI:88284 RGD:2286 CBR1 114830 objectId:1383 1.1.1.184 +HGNC:1549 CBR3 carbonyl reductase 3 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 SDR21C2 short chain dehydrogenase/reductase family 21C, member 2 Short chain dehydrogenase/reductase superfamily 743 1998-01-16 2016-10-05 874 ENSG00000159231 OTTHUMG00000086617 uc002yve.4 AB004854 XM_011529772 CCDS13642 O75828 "9740676|19027726" MGI:1309992 RGD:1309728 CBR3 603608 1.1.1.184 +HGNC:43664 CBR3-AS1 CBR3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.12 21q22.12 PlncRNA-1 prostate cancer-up-regulated long noncoding RNA 1 CBR3 antisense RNA 1 (non-protein coding) 2012-02-08 2012-08-15 2013-12-19 100506428 ENSG00000236830 OTTHUMG00000086607 uc061zxr.1 BC038671 NR_038892 "22264502|24337686" +HGNC:25891 CBR4 carbonyl reductase 4 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 "FLJ14431|SDR45C1" short chain dehydrogenase/reductase family 45C, member 1 Short chain dehydrogenase/reductase superfamily 743 2006-03-21 2015-09-11 84869 ENSG00000145439 OTTHUMG00000161025 uc003iry.4 BC021973 NM_032783 CCDS3812 Q8N4T8 19027726 MGI:2384567 RGD:727826 CBR4 1.1.1.- +HGNC:1550 CBS cystathionine-beta-synthase protein-coding gene gene with protein product Approved 21q22.3 21q22.3 HIP4 2001-06-22 2016-10-12 875 ENSG00000160200 OTTHUMG00000086834 uc002zcv.3 L14577 NM_000071 CCDS13693 P35520 9790750 MGI:88285 RGD:2287 "Cystathionine beta-synthase database|http://cbs.lf1.cuni.cz/index.php|LRG_777|http://www.lrg-sequence.org/LRG/LRG_777" CBS 613381 119199 objectId:1443 4.2.1.22 +HGNC:51829 CBSL cystathionine-beta-synthase like protein-coding gene gene with protein product Approved 21p12 21p12 2015-07-24 2015-07-24 102724560 ENSG00000274276 OTTHUMG00000189375 NM_001321073 CCDS82646 P0DN79 MGI:88285 +HGNC:17134 CBWD1 COBW domain containing 1 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 2001-11-26 2015-08-27 55871 ENSG00000172785 OTTHUMG00000019425 uc064rtg.1 AY343911 NM_018491 "CCDS6438|CCDS47947|CCDS47948" Q9BRT8 "15233989|12421752" MGI:2385089 RGD:708495 CBWD1 611078 +HGNC:17907 CBWD2 COBW domain containing 2 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 2002-01-08 2015-08-28 150472 ENSG00000136682 OTTHUMG00000131360 uc002tju.4 AF452722 NM_172003 "CCDS2116|CCDS82502" Q8IUF1 "12421752|15233989" CBWD2 611079 +HGNC:18519 CBWD3 COBW domain containing 3 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 bA561O23.1 2004-08-25 2016-10-05 445571 ENSG00000196873 OTTHUMG00000184383 uc004agi.6 BC069006 NM_201453 CCDS35038 Q5JTY5 "15233989|12421752" CBWD3 611080 +HGNC:18520 CBWD4P COBW domain containing 4 pseudogene pseudogene pseudogene Approved 9q21.11 09q21.11 2004-08-25 2016-10-05 653510 ENSG00000204778 OTTHUMG00000013333 NG_027949 +HGNC:24584 CBWD5 COBW domain containing 5 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 dopamine responsive protein 2005-08-23 2016-10-05 220869 ENSG00000147996 OTTHUMG00000013336 uc004aga.6 "BC067803|BC082271" XM_017014455 "CCDS75841|CCDS75843|CCDS75844|CCDS83367" Q5RIA9 CBWD5 +HGNC:31978 CBWD6 COBW domain containing 6 protein-coding gene gene with protein product Approved 9q13 09q13 OTTHUMG00000066820 2006-06-30 2015-08-28 644019 NM_001085457 CCDS43827 Q4V339 CBWD6 +HGNC:31977 CBWD7 COBW domain containing 7 protein-coding gene gene with protein product Approved 9p12 09p12 OTTHUMG00000067194 2006-06-30 2012-04-19 728013 ENSG00000215126 OTTHUMG00000067194 uc033csb.2 XM_001717050 A6NM15 CBWD7 +HGNC:1551 CBX1 chromobox 1 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HP1Hs-beta|M31|MOD1|CBX|HP1-BETA" HP1 beta homolog (Drosophila ) "chromobox homolog 1 (Drosophila HP1 beta)|chromobox homolog 1" Chromobox family 976 1999-10-12 2015-11-24 2015-11-24 10951 ENSG00000108468 OTTHUMG00000150417 uc002ine.4 U35451 NM_006807 CCDS11525 P83916 9169582 MGI:105369 RGD:1310714 CBX1 604511 +HGNC:38655 CBX1P1 chromobox 1 pseudogene 1 pseudogene pseudogene Approved Xq11.1 Xq11.1 chromobox homolog 1 pseudogene 1 2010-07-06 2015-11-24 2015-11-24 645251 ENSG00000230823 OTTHUMG00000021695 NG_007614 PGOHUM00000241348 +HGNC:38656 CBX1P2 chromobox 1 pseudogene 2 pseudogene pseudogene Approved Xp22.2 Xp22.2 chromobox homolog 1 pseudogene 2 2010-07-06 2015-11-24 2016-10-05 100147811 ENSG00000214322 OTTHUMG00000021200 NG_007618 PGOHUM00000241201 +HGNC:38657 CBX1P3 chromobox 1 pseudogene 3 pseudogene pseudogene Approved 1q32.1 01q32.1 chromobox homolog 1 pseudogene 3 2010-07-06 2015-11-24 2015-11-24 100128723 ENSG00000237379 OTTHUMG00000036053 NG_007647 PGOHUM00000245170 +HGNC:38658 CBX1P4 chromobox 1 pseudogene 4 pseudogene pseudogene Approved Xp22.2 Xp22.2 chromobox homolog 1 pseudogene 4 2010-07-06 2015-11-24 2016-10-05 100130461 ENSG00000214321 OTTHUMG00000021201 NG_007646 PGOHUM00000241655 +HGNC:21006 CBX1P5 chromobox 1 pseudogene 5 pseudogene pseudogene Approved 3q26.1 03q26.1 CBX9 "chromobox homolog 9|chromobox homolog 1 pseudogene 5" 2004-03-10 2010-07-06 2015-11-24 2015-11-24 100133259 ENSG00000231516 OTTHUMG00000158232 NG_007645 PGOHUM00000238256 +HGNC:1552 CBX2 chromobox 2 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 MGC10561 Pc class homolog (Drosophila) CDCA6 "chromobox homolog 2 (Drosophila Pc class)|cell division cycle associated 6|chromobox homolog 2" Chromobox family 976 1994-05-25 2015-11-24 2015-11-24 84733 ENSG00000173894 OTTHUMG00000177463 uc002jxc.4 "BC004252|BG354579" NM_032647 "CCDS11764|CCDS32757" Q14781 "7782071|2477932" MGI:88289 RGD:1588561 CBX2 602770 240686 +HGNC:1553 CBX3 chromobox 3 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 HP1Hs-gamma HP1 gamma homolog (Drosophila) "chromobox homolog 3 (Drosophila HP1 gamma)|chromobox homolog 3" Chromobox family 976 1999-10-12 2015-11-24 2015-11-24 11335 ENSG00000122565 OTTHUMG00000022911 uc003sxt.4 U26312 NM_007276 CCDS5398 Q13185 8663349 MGI:108515 RGD:1549705 CBX3 604477 +HGNC:33950 CBX3P1 chromobox 3 pseudogene 1 pseudogene pseudogene Approved 11p14.1 11p14.1 chromobox homolog 3 pseudogene 1 2008-01-23 2015-11-24 2015-11-24 159770 ENSG00000177447 OTTHUMG00000150411 AF063304 NG_001315 PGOHUM00000242624 +HGNC:42874 CBX3P2 chromobox 3 pseudogene 2 pseudogene pseudogene Approved 18p11.32 18p11.32 chromobox homolog 3 pseudogene 2 2011-09-05 2015-11-24 2015-11-24 645158 ENSG00000266405 NR_033754 PGOHUM00000234840 +HGNC:42875 CBX3P3 chromobox 3 pseudogene 3 pseudogene pseudogene Approved 5q22.2 05q22.2 chromobox homolog 3 pseudogene 3 2011-09-05 2015-11-24 2015-11-24 100421861 ENSG00000250045 OTTHUMG00000162857 NG_024619 PGOHUM00000235359 +HGNC:42876 CBX3P4 chromobox 3 pseudogene 4 pseudogene pseudogene Approved 12p13.33 12p13.33 chromobox homolog 3 pseudogene 4 2011-09-05 2015-11-24 2015-11-24 100873792 ENSG00000256030 OTTHUMG00000168104 NG_032536 PGOHUM00000239295 +HGNC:42877 CBX3P5 chromobox 3 pseudogene 5 pseudogene pseudogene Approved 12q22 12q22 chromobox homolog 3 pseudogene 5 2011-09-05 2015-11-24 2015-11-24 100421943 ENSG00000257666 OTTHUMG00000170215 NG_024039 PGOHUM00000239549 +HGNC:42878 CBX3P6 chromobox 3 pseudogene 6 pseudogene pseudogene Approved 2q24.1 02q24.1 chromobox homolog 3 pseudogene 6 2011-09-05 2015-11-24 2015-11-24 642721 ENSG00000228837 OTTHUMG00000150419 NG_021530 PGOHUM00000240392 +HGNC:42879 CBX3P7 chromobox 3 pseudogene 7 pseudogene pseudogene Approved 11q14.3 11q14.3 chromobox homolog 3 pseudogene 7 2011-09-05 2015-11-24 2015-11-24 100421975 ENSG00000197692 OTTHUMG00000167295 NG_024399 PGOHUM00000242404 +HGNC:42880 CBX3P8 chromobox 3 pseudogene 8 pseudogene pseudogene Approved 11p11.12 11p11.12 chromobox homolog 3 pseudogene 8 2011-09-05 2015-11-24 2015-11-24 100286965 ENSG00000254496 OTTHUMG00000166649 NG_021817 PGOHUM00000242686 +HGNC:42881 CBX3P9 chromobox 3 pseudogene 9 pseudogene pseudogene Approved 6q22.1 06q22.1 chromobox homolog 3 pseudogene 9 2011-09-05 2015-11-24 2015-11-24 644101 ENSG00000217241 OTTHUMG00000015436 NG_022324 PGOHUM00000243340 +HGNC:1554 CBX4 chromobox 4 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "hPC2|PC2|NBP16" "NS5ATP1-binding protein 16|Pc class 2 homolog (Drosophila)" "chromobox homolog 4 (Drosophila Pc class)|chromobox homolog 4" Chromobox family 976 1998-10-20 2015-11-24 2015-11-24 8535 ENSG00000141582 OTTHUMG00000150415 uc002jxe.4 AF013956 NM_003655 CCDS32758 O00257 9315667 MGI:1195985 RGD:1587243 CBX4 603079 +HGNC:1555 CBX5 chromobox 5 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HP1Hs-alpha|HP1|HP1-ALPHA" HP1 alpha homolog (Drosophila) "chromobox homolog 5 (Drosophila HP1 alpha)|chromobox homolog 5 (HP1 alpha homolog, Drosophila)|chromobox homolog 5" Chromobox family 976 1999-10-12 2015-11-24 2015-11-24 23468 ENSG00000094916 OTTHUMG00000169700 uc001sfk.6 U26311 NM_012117 CCDS8875 P45973 8663349 MGI:109372 RGD:1306619 CBX5 604478 +HGNC:38659 CBX5P1 chromobox 5 pseudogene 1 pseudogene pseudogene Approved 3p11.1 03p11.1 chromobox homolog 5 pseudogene 1 2010-07-06 2015-11-24 2015-11-24 100151661 ENSG00000241535 OTTHUMG00000159062 NG_007668 PGOHUM00000237674 +HGNC:1556 CBX6 chromobox 6 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 chromobox homolog 6 Chromobox family 976 1999-10-13 2015-11-24 2015-11-24 23466 ENSG00000183741 OTTHUMG00000150456 uc003awl.4 NM_014292 "CCDS13980|CCDS77675" O95503 MGI:3512628 RGD:1307314 CBX6 +HGNC:1557 CBX7 chromobox 7 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 chromobox homolog 7 Chromobox family 976 1999-10-13 2015-11-24 2015-11-24 23492 ENSG00000100307 OTTHUMG00000150418 uc003axb.4 NM_175709 CCDS13986 O95931 MGI:1196439 RGD:735027 CBX7 608457 +HGNC:15962 CBX8 chromobox 8 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "RC1|HPC3|PC3" "polycomb 3|Pc class 3 homolog (Drosophila)" "chromobox homolog 8 (Drosophila Pc class)|chromobox homolog 8" Chromobox family 976 2001-06-25 2015-11-24 2015-11-24 57332 ENSG00000141570 OTTHUMG00000150416 uc002jxd.3 AF174482 NM_020649 CCDS11765 Q9HC52 10825164 MGI:1353589 RGD:1565375 CBX8 +HGNC:1307 CBY1 chibby family member 1, beta catenin antagonist protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "PIGEA14|PIGEA-14|Chibby|Cby" chibby CTNNB1-mediated transcription inhibitor "C22orf2|PGEA1" "chromosome 22 open reading frame 2|PKD2 interactor, golgi and endoplasmic reticulum associated 1|chibby homolog 1 (Drosophila)" 2000-03-29 2007-01-26 2016-06-07 2016-10-05 25776 ENSG00000100211 OTTHUMG00000150990 uc003awc.5 BK005534 NM_015373 "CCDS13974|CCDS74861" Q9Y3M2 "12712206|15194699" MGI:1920989 RGD:708481 CBY1 607757 +HGNC:33278 CBY3 chibby family member 3 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 chibby homolog 3 (Drosophila) 2007-01-29 2016-06-07 2016-06-07 646019 ENSG00000204659 OTTHUMG00000163163 uc021yjf.2 XM_936994 CCDS47354 A6NI87 MGI:1923903 RGD:1594715 CBY3 +HGNC:30237 CC2D1A coiled-coil and C2 domain containing 1A protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "FLJ20241|MRT3" mental retardation, nonsyndromic, autosomal recessive, 3 C2 domain containing 823 2005-07-05 2015-09-11 54862 ENSG00000132024 OTTHUMG00000181852 uc002mxo.3 AF536205 NM_017721 CCDS42512 Q6P1N0 "12761501|16033914" MGI:2384831 RGD:1306108 CC2D1A 610055 119202 +HGNC:29386 CC2D1B coiled-coil and C2 domain containing 1B protein-coding gene gene with protein product Approved 1p32.3 01p32.3 KIAA1836 C2 domain containing 823 2005-07-05 2015-08-26 200014 ENSG00000154222 OTTHUMG00000008102 uc001ctq.3 AB058739 NM_032449 "CCDS30714|CCDS81323" Q5T0F9 11347906 MGI:2443076 RGD:1306630 CC2D1B +HGNC:29253 CC2D2A coiled-coil and C2 domain containing 2A protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "KIAA1345|MKS6|JBTS9" Meckel syndrome, type 6 2007-10-19 2007-10-19 2016-10-12 57545 ENSG00000048342 OTTHUMG00000160255 uc062vgy.1 "AB037766|EU450799" NM_001080522 "CCDS47026|CCDS47027|CCDS54744" Q9P2K1 "10718198|18513680" MGI:1924487 RGD:1561042 LRG_697|http://www.lrg-sequence.org/LRG/LRG_697 CC2D2A 612013 159539 +HGNC:31666 CC2D2B coiled-coil and C2 domain containing 2B protein-coding gene gene with protein product Approved 10q24.1 10q24.1 bA248J23.4 C10orf130 chromosome 10 open reading frame 130 2004-05-27 2007-10-19 2007-10-19 2016-10-05 387707 ENSG00000188649 OTTHUMG00000191767 uc001kll.4 BC075861 NM_001001732 "CCDS41555|CCDS53560" Q6DHV5 RGD:1310408 CC2D2B +HGNC:1559 CCA1 cataract, congenital, cerulean type, 1 phenotype phenotype only Approved 17q24 17q24 CTRCT7 1987-09-11 2014-02-07 878 7704021 115660 +HGNC:1561 CCAL1 chondrocalcinosis 1 (calcium pyrophosphate-deposition disease, early onset osteoarthritis) phenotype phenotype only Approved 8q 08q CPDD 1995-03-30 1999-07-15 882 7887424 600668 +HGNC:24236 CCAR1 cell division cycle and apoptosis regulator 1 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "FLJ10590|CARP-1|CARP1" 2004-02-19 2016-10-05 55749 ENSG00000060339 OTTHUMG00000018361 uc001joo.5 AY249140 NM_018237 "CCDS7282|CCDS60547" Q8IX12 12816952 MGI:1914750 RGD:1560358 CCAR1 612569 +HGNC:23360 CCAR2 cell cycle and apoptosis regulator 2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "DBC-1|DBC1|NET35" deleted in breast cancer KIAA1967 KIAA1967 2004-11-08 2013-08-22 2013-08-22 2016-10-05 57805 ENSG00000158941 OTTHUMG00000162249 AL834351 NM_021174 CCDS34863 Q8N163 12370419 MGI:2444228 RGD:1309922 607359 +HGNC:45128 CCAT1 colon cancer associated transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "CARLo-5|onco-lncRNA-40" Long non-coding RNAs 788 2013-02-14 2015-07-29 100507056 ENSG00000247844 OTTHUMG00000165065 uc003ysa.4 "HM358356|AK125310" NR_108049 "23416875|23143645|21547902|24594601" +HGNC:47044 CCAT2 colon cancer associated transcript 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "NCCP1|LINC00873" "long intergenic non-protein coding RNA 873|non-coding RNA involved in cancer predisposition 1" Long non-coding RNAs 788 2013-06-22 2014-07-18 101805488 ENSG00000280997 OTTHUMG00000189734 GQ911591 NR_109834 "23796952|24504682" +HGNC:29426 CCBE1 collagen and calcium binding EGF domains 1 protein-coding gene gene with protein product Approved 18q21.32 18q21.32 "FLJ30681|KIAA1983" 2005-01-18 2014-11-19 147372 ENSG00000183287 OTTHUMG00000180087 uc002lib.4 AB075863 NM_133459 CCDS32838 Q6UXH8 "11853319|12975309" MGI:2445053 RGD:1307670 CCBE1 612753 220744 +HGNC:1566 CCD# entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:23813 CCDC3 coiled-coil domain containing 3 protein-coding gene gene with protein product Approved 10p13 10p13 DKFZp761F241 favine 2004-02-13 2016-10-05 83643 ENSG00000151468 OTTHUMG00000017689 uc001ilq.2 BC051334 NM_031455 "CCDS7093|CCDS60484" Q9BQI4 20043878 MGI:1921436 RGD:1559473 CCDC3 +HGNC:18782 CCDC6 coiled-coil domain containing 6 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "PTC|TPC|H4" DNA segment, single copy, probe pH4 (transforming sequence, thyroid-1 "TST1|D10S170" DNA segment on chromosome 10 (unique) 170 2004-01-20 2004-01-20 2014-11-19 8030 ENSG00000108091 OTTHUMG00000018284 uc001jks.5 S72869 NM_005436 CCDS7257 Q16204 "8058316|6745938" MGI:1923801 RGD:1587433 CCDC6 601985 119206 +HGNC:26533 CCDC7 coiled-coil domain containing 7 protein-coding gene gene with protein product Approved 10p11.23 10p11.23 "FLJ32762|FLJ13031|BIOT2" C10orf68 chromosome 10 open reading frame 68 2004-02-04 2015-09-10 79741 ENSG00000216937 OTTHUMG00000150517 uc001iwn.5 BC022020 NM_145023 CCDS7173 Q96M83 21109960 "MGI:1921953|MGI:1922703" RGD:1359250 CCDC7 +HGNC:25367 CCDC8 coiled-coil domain containing 8 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "DKFZp564K0322|3M3|PPP1R20" protein phosphatase 1, regulatory subunit 20 Protein phosphatase 1 regulatory subunits 694 2004-02-11 2016-10-05 83987 ENSG00000169515 OTTHUMG00000162348 uc002pep.4 BC025243 NM_032040 CCDS12685 Q9H0W5 11230166 MGI:3612184 RGD:1359717 CCDC8 614145 270465 +HGNC:24560 CCDC9 coiled-coil domain containing 9 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 DKFZP586M1019 2004-02-11 2016-10-05 26093 ENSG00000105321 OTTHUMG00000183503 uc010xym.3 AL050284 NM_015603 CCDS12698 Q9Y3X0 11230166 MGI:1921443 RGD:1584422 CCDC9 +HGNC:43919 CCDC11P1 coiled-coil domain containing 11 pseudogene 1 pseudogene pseudogene Approved 5p13.1 05p13.1 2012-05-04 2012-05-04 100129040 ENSG00000251515 OTTHUMG00000162073 NG_021844 PGOHUM00000235196 +HGNC:28332 CCDC12 coiled-coil domain containing 12 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 MGC23918 2005-01-25 2016-04-25 151903 ENSG00000160799 OTTHUMG00000133513 uc062jbe.1 BC020830 NM_144716 "CCDS2748|CCDS63612" Q8WUD4 12477932 MGI:1919904 RGD:1306081 CCDC12 +HGNC:26358 CCDC13 coiled-coil domain containing 13 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 FLJ25467 2005-01-25 2015-08-24 152206 ENSG00000244607 OTTHUMG00000133046 uc003cly.5 AK058196 NM_144719 CCDS2705 Q8IYE1 12477932 MGI:1920144 RGD:1586605 CCDC13 +HGNC:41142 CCDC13-AS1 CCDC13 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.1 03p22.1 CCDC13 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874114 ENSG00000173811 OTTHUMG00000156256 uc062irr.1 NR_046732 +HGNC:25766 CCDC14 coiled-coil domain containing 14 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "FLJ12892|DKFZp434L1050" 2005-02-04 2014-11-19 64770 ENSG00000175455 OTTHUMG00000153005 uc010hrt.4 AL122079 NM_022757 "CCDS3025|CCDS77806" Q49A88 12477932 MGI:2443448 RGD:1562189 CCDC14 617147 +HGNC:25798 CCDC15 coiled-coil domain containing 15 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 FLJ13215 2005-03-13 2014-11-19 80071 ENSG00000149548 OTTHUMG00000165940 uc001qbm.6 BC018540 NM_025004 CCDS44756 Q0P6D6 MGI:2444488 RGD:1305591 CCDC15 +HGNC:26574 CCDC17 coiled-coil domain containing 17 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 FLJ33084 2005-05-13 2016-04-25 149483 ENSG00000159588 OTTHUMG00000007822 uc010olt.3 NM_152500 "CCDS44131|CCDS53314" Q96LX7 MGI:1915667 RGD:1598211 CCDC17 +HGNC:30370 CCDC18 coiled-coil domain containing 18 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 NY-SAR-41 2005-06-24 2015-08-26 343099 ENSG00000122483 OTTHUMG00000010598 uc057iix.1 NM_206886 CCDS76180 Q5T9S5 12601173 MGI:1922974 RGD:1564165 CCDC18 +HGNC:52262 CCDC18-AS1 CCDC18 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p22.1 01p22.1 ENST00000440778.1 2015-11-04 2015-11-04 100131564 ENSG00000223745 OTTHUMG00000010705 NR_034089 26421281 +HGNC:28909 CCDC22 coiled-coil domain containing 22 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 JM1 CXorf37 chromosome X open reading frame 37 2004-09-01 2005-07-24 2005-07-24 2016-01-07 28952 ENSG00000101997 OTTHUMG00000024141 uc004dnd.2 BC000972 NM_014008 CCDS14322 O60826 25355947 MGI:1859608 RGD:1560910 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CCDC22 CCDC22 300859 410622 +HGNC:28688 CCDC24 coiled-coil domain containing 24 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 MGC45441 2005-07-26 2015-08-26 149473 ENSG00000159214 OTTHUMG00000008299 uc001clj.4 NM_152499 CCDS507 Q8N4L8 12477932 MGI:2685874 RGD:1562911 CCDC24 +HGNC:25591 CCDC25 coiled-coil domain containing 25 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 FLJ10853 2005-07-29 2014-11-19 55246 ENSG00000147419 OTTHUMG00000132173 uc003xgc.4 AK001715 NM_018246 "CCDS6062|CCDS78323|CCDS78324" Q86WR0 12477932 MGI:1914429 RGD:1307689 CCDC25 +HGNC:28416 CCDC26 CCDC26 long non-coding RNA non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "MGC27434|RAM" retinoic acid modulator coiled-coil domain containing 26 2005-08-05 2014-03-27 2014-04-01 137196 ENSG00000229140 OTTHUMG00000164848 uc064qez.1 BC026098 NR_130920 Q8TAB7 "16449964|23399484" 613040 +HGNC:26546 CCDC27 coiled-coil domain containing 27 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 FLJ32825 2005-08-09 2014-11-19 148870 ENSG00000162592 OTTHUMG00000003504 uc001akv.3 NM_152492 CCDS50 Q2M243 MGI:2685881 RGD:1587099 CCDC27 +HGNC:21098 CCDC28A coiled-coil domain containing 28A protein-coding gene gene with protein product Approved 6q24.1 06q24.1 "CCRL1AP|DKFZp586D0623" C6orf80 chromosome 6 open reading frame 80 2003-05-19 2005-09-12 2005-09-12 2016-10-05 25901 ENSG00000024862 OTTHUMG00000015683 uc063rvk.1 AY167571 NM_015439 CCDS5192 Q8IWP9 MGI:2443508 RGD:1310326 CCDC28A 615353 +HGNC:28163 CCDC28B coiled-coil domain containing 28B protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "MGC1203|RP4-622L5.5" 2005-09-12 2016-10-05 79140 ENSG00000160050 OTTHUMG00000005738 uc001bul.2 BC022848 NM_024296 "CCDS354|CCDS72749" Q9BUN5 "16327777|23727834" MGI:1913514 RGD:1583447 CCDC28B 610162 +HGNC:26103 CCDC30 coiled-coil domain containing 30 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "FLJ20972|PFD6L|LOC728621" prefoldin 6-like 2009-07-09 2015-08-24 728621 ENSG00000186409 OTTHUMG00000007334 uc057fjg.1 AY639646 NM_025030 CCDS30690 Q5VVM6 16710767 MGI:1920582 RGD:1305604 CCDC30 +HGNC:26552 CCDC33 coiled-coil domain containing 33 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "FLJ32855|CT61" cancer/testis antigen 61 C2 domain containing 823 2005-10-24 2014-11-19 80125 ENSG00000140481 OTTHUMG00000172621 uc002axo.4 BC025689 NM_182791 "CCDS42058|CCDS42059|CCDS73753" Q8N5R6 12477932 MGI:1922464 RGD:1561126 CCDC33 +HGNC:25079 CCDC34 coiled-coil domain containing 34 protein-coding gene gene with protein product Approved 11p14.1 11p14.1 "NY-REN-41|L15|RAMA3" 2005-10-28 2014-11-19 91057 ENSG00000109881 OTTHUMG00000166211 uc001mri.2 AF382034 NM_030771 "CCDS7863|CCDS31448" Q96HJ3 11173847 MGI:1915451 RGD:1560583 CCDC34 612324 +HGNC:44008 CCDC34P1 coiled-coil domain containing 34 pseudogene 1 pseudogene pseudogene Approved 4q25 04q25 2012-05-28 2012-05-28 100288584 ENSG00000250556 OTTHUMG00000161050 NG_022070 PGOHUM00000246029 +HGNC:27945 CCDC36 coiled-coil domain containing 36 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "FLJ25320|CT74" cancer/testis antigen 74 2005-11-02 2014-11-19 339834 ENSG00000173421 OTTHUMG00000155920 uc003cwk.3 AK058049 NM_178173 CCDS33755 Q8IYA8 MGI:3612242 RGD:1596869 CCDC36 +HGNC:49641 CCDC37-AS1 CCDC37 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 2014-01-28 2014-01-28 100506907 ENSG00000249833 OTTHUMG00000162688 NR_103787 +HGNC:26843 CCDC38 coiled-coil domain containing 38 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 FLJ40089 2005-11-02 2014-12-03 120935 ENSG00000165972 OTTHUMG00000170352 uc001tek.3 AK097408 NM_182496 CCDS9056 Q502W7 25074808 MGI:2444738 RGD:1564046 CCDC38 +HGNC:25244 CCDC39 coiled-coil domain containing 39 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "DKFZp434A128|CILD14|FAP59" 2005-11-11 2015-09-11 339829 ENSG00000145075 OTTHUMG00000157857 uc010hxe.4 BC047103 XM_291028 CCDS46964 Q9UFE4 21131972 MGI:1289263 RGD:1306277 CCDC39 613798 246552 +HGNC:41089 CCDC39-AS1 CCDC39 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q26.33 03q26.33 CCDC39 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874112 ENSG00000243187 OTTHUMG00000157929 uc062qhk.1 +HGNC:26090 CCDC40 coiled-coil domain containing 40 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FLJ20753|KIAA1640|FLJ32021|CILD15|FAP172" 2005-12-13 2014-11-19 55036 ENSG00000141519 OTTHUMG00000132707 uc010dht.4 AB046860 XM_371082 "CCDS42395|CCDS58604|CCDS82212" Q4G0X9 21131974 MGI:2443893 RGD:1592118 CCDC40 613799 246554 +HGNC:26528 CCDC42 coiled-coil domain containing 42 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "FLJ32734|CCDC42A" 2005-12-15 2015-10-06 146849 ENSG00000161973 OTTHUMG00000178565 uc002gln.4 AK057296 NM_144681 "CCDS11145|CCDS54088" Q96M95 MGI:3045254 RGD:1565925 CCDC42 +HGNC:26472 CCDC43 coiled-coil domain containing 43 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ31795 2005-12-16 2005-12-16 124808 ENSG00000180329 OTTHUMG00000181822 uc002ihc.3 AK056357 NM_144609 "CCDS45704|CCDS45705" Q96MW1 12477932 MGI:1289318 RGD:1311929 CCDC43 +HGNC:24856 CCDC47 coiled-coil domain containing 47 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 GK001 Calumin 2005-12-19 2016-09-30 57003 ENSG00000108588 OTTHUMG00000178933 uc002jbs.5 AF226054 NM_020198 CCDS11643 Q96A33 "17204322|25009997" MGI:1914413 RGD:1308813 CCDC47 +HGNC:18111 CCDC50 coiled-coil domain containing 50 protein-coding gene gene with protein product Approved 3q28 03q28 Ymer "C3orf6|DFNA44" deafness, autosomal dominant 44 2002-01-31 2005-12-23 2014-11-19 152137 ENSG00000152492 OTTHUMG00000156177 uc003fsv.4 AJ416916 NM_174908 "CCDS33912|CCDS33913" Q8IVM0 "16803894|17503326" MGI:1914751 RGD:727841 CCDC50 611051 159308 +HGNC:25714 CCDC51 coiled-coil domain containing 51 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ12436 2005-12-30 2014-11-19 79714 ENSG00000164051 OTTHUMG00000133534 uc031rzm.2 AK022498 NM_024661 "CCDS2766|CCDS58830" Q96ER9 12477932 MGI:1913908 RGD:1311466 CCDC51 +HGNC:24256 CCDC53 coiled-coil domain containing 53 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 CGI-116 WASH complex 1331 2006-01-04 2016-10-05 51019 ENSG00000120860 OTTHUMG00000168187 uc010svw.3 AF151874 NM_016053 "CCDS44959|CCDS73512" Q9Y3C0 "10810093|20498093" MGI:1914532 RGD:1563761 CCDC53 +HGNC:30703 CCDC54 coiled-coil domain containing 54 protein-coding gene gene with protein product Approved 3q13.12 03q13.12 "NYD-SP17|FLJ25362|SP17" sperm protein 17 2006-01-10 2014-11-18 84692 ENSG00000138483 OTTHUMG00000159169 uc003dwi.2 AF367469 NM_032600 CCDS2949 Q8NEL0 15257753 MGI:1916589 RGD:1559779 CCDC54 +HGNC:27564 CCDC57 coiled-coil domain containing 57 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FLJ00130|FLJ23754" 2006-01-12 2006-03-08 284001 ENSG00000176155 OTTHUMG00000140396 uc060lwj.1 BC040264 NM_198082 CCDS11803 Q2TAC2 12477932 MGI:1918526 RGD:1590047 CCDC57 +HGNC:31136 CCDC58 coiled-coil domain containing 58 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 FLJ33273 2006-01-17 2014-11-19 131076 ENSG00000160124 OTTHUMG00000159490 uc003eey.4 AK090592 NM_001017928 "CCDS33838|CCDS77802" Q4VC31 MGI:2146423 RGD:1564582 CCDC58 +HGNC:32457 CCDC58P1 coiled-coil domain containing 58 pseudogene 1 pseudogene pseudogene Approved 18p11.22 18p11.22 2006-01-17 2012-03-01 645859 ENSG00000264311 OTTHUMG00000178563 AP001180 NG_009486 PGOHUM00000234854 +HGNC:45025 CCDC58P2 coiled-coil domain containing 58 pseudogene 2 pseudogene pseudogene Approved 10q11.23 10q11.23 2013-01-08 2013-01-08 100287708 ENSG00000236944 OTTHUMG00000018242 NG_029973 PGOHUM00000238492 +HGNC:45026 CCDC58P3 coiled-coil domain containing 58 pseudogene 3 pseudogene pseudogene Approved 18p11.21 18p11.21 2013-01-08 2013-01-08 732448 ENSG00000267076 OTTHUMG00000180719 NG_030064 PGOHUM00000234999 +HGNC:45027 CCDC58P4 coiled-coil domain containing 58 pseudogene 4 pseudogene pseudogene Approved 3p22.1 03p22.1 2013-01-08 2013-01-08 106632269 NG_042875 PGOHUM00000237601 +HGNC:45028 CCDC58P5 coiled-coil domain containing 58 pseudogene 5 pseudogene pseudogene Approved 11q13.4 11q13.4 2013-01-08 2013-01-08 100420588 ENSG00000256681 OTTHUMG00000168060 NG_024383 PGOHUM00000242363 +HGNC:25005 CCDC59 coiled-coil domain containing 59 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 "HSPC128|TAP26|BR22" 2006-01-23 2014-11-19 29080 ENSG00000133773 OTTHUMG00000170251 uc001szp.5 AF213377 NM_014167 CCDS9023 Q9P031 "16630564|12882447" MGI:1289302 RGD:1311912 CCDC59 +HGNC:28610 CCDC60 coiled-coil domain containing 60 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 MGC39827 2006-01-23 2015-08-24 160777 ENSG00000183273 OTTHUMG00000168943 uc001txe.3 BC040553 NM_178499 CCDS9190 Q8IWA6 12477932 MGI:2141043 RGD:1564283 CCDC60 +HGNC:33629 CCDC61 coiled-coil domain containing 61 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 2007-10-18 2016-04-25 729440 ENSG00000104983 OTTHUMG00000182488 uc031rlj.2 NM_001080402 CCDS46120 Q9Y6R9 MGI:2685005 RGD:1307390 CCDC61 +HGNC:30723 CCDC62 coiled-coil domain containing 62 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "TSP-NY|FLJ40344|CT109|ERAP75" cancer/testis antigen 109 2006-01-23 2015-08-24 84660 ENSG00000130783 OTTHUMG00000168764 uc001udc.4 NM_032573 CCDS9238 Q6P9F0 "18563714|19126643" MGI:2684996 RGD:1586391 CCDC62 613481 +HGNC:26669 CCDC63 coiled-coil domain containing 63 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "ODA5|FLJ35843" outer row dynein assembly 5 homolog (Chlamydomonas) 2006-01-24 2014-11-19 160762 ENSG00000173093 OTTHUMG00000169534 uc001trv.2 AK093162 NM_152591 "CCDS9151|CCDS66470|CCDS73528" Q8NA47 MGI:3607777 RGD:1562334 CCDC63 +HGNC:29937 CCDC65 coiled-coil domain containing 65 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "NYD-SP28|FLJ35732|FAP250|CFAP250|CILD27|DRC2" Dynein regulatory complex 981 2006-01-26 2015-10-13 85478 ENSG00000139537 OTTHUMG00000170401 uc001rso.4 NM_033124 CCDS8772 Q8IXS2 "17089017|21700706" MGI:2146001 RGD:1595842 CCDC65 611088 367625 +HGNC:27709 CCDC66 coiled-coil domain containing 66 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 DKFZp686C0433 2006-02-01 2014-11-19 285331 ENSG00000180376 OTTHUMG00000155748 uc003dhu.4 AL832692 NM_001012506 "CCDS33770|CCDS46852" A2RUB6 14702039 MGI:2443639 RGD:1560873 CCDC66 +HGNC:24350 CCDC68 coiled-coil domain containing 68 protein-coding gene gene with protein product Approved 18q21.2 18q21.2 SE57-1 cutaneous T-cell lymphoma associated antigen 2006-02-06 2016-10-05 80323 ENSG00000166510 OTTHUMG00000132708 uc002lft.3 NM_025214 CCDS11959 Q9H2F9 "11149944|15142679" MGI:3612676 RGD:1561424 CCDC68 616909 +HGNC:24487 CCDC69 coiled-coil domain containing 69 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "FLJ13705|DKFZP434C171" 2006-02-07 2014-11-19 26112 ENSG00000198624 OTTHUMG00000130127 uc003ltq.4 NM_015621 CCDS4312 A6NI79 12477932 MGI:1196234 RGD:1562251 CCDC69 +HGNC:25303 CCDC70 coiled-coil domain containing 70 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "DKFZP434K1172|FLJ25853" 2006-02-07 2014-11-19 83446 ENSG00000123171 OTTHUMG00000016950 uc001vfu.5 NM_031290 CCDS9431 Q6NSX1 11230166 MGI:1915179 RGD:1559811 CCDC70 +HGNC:25760 CCDC71 coiled-coil domain containing 71 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ12800 2006-02-09 2015-09-11 64925 ENSG00000177352 OTTHUMG00000156815 uc003cwg.5 AK022862 NM_022903 CCDS2790 Q8IV32 12477932 MGI:1919704 RGD:1566341 CCDC71 +HGNC:26685 CCDC71L coiled-coil domain containing 71-like protein-coding gene gene with protein product Approved 7q22.3 07q22.3 FLJ36031 C7orf74 chromosome 7 open reading frame 74 2011-08-04 2011-12-12 2011-12-12 2015-09-11 168455 ENSG00000253276 OTTHUMG00000164150 uc003vdt.4 NM_175884 CCDS55151 Q8N9Z2 12477932 MGI:1919373 RGD:1560812 CCDC71L +HGNC:23261 CCDC73 coiled-coil domain containing 73 protein-coding gene gene with protein product Approved 11p13 11p13 NY-SAR-79 2006-02-11 2014-11-19 493860 ENSG00000186714 OTTHUMG00000166279 uc001mtv.5 AK128159 NM_001008391 CCDS41630 Q6ZRK6 MGI:3606488 RGD:1563448 CCDC73 612328 +HGNC:25197 CCDC74A coiled-coil domain containing 74A protein-coding gene gene with protein product Approved 2q21.1 02q21.1 FLJ40345 2006-02-13 2006-02-16 2015-08-26 90557 ENSG00000163040 OTTHUMG00000131667 uc002tta.5 NM_138770 "CCDS2167|CCDS58732|CCDS74578" Q96AQ1 12477932 MGI:1919565 RGD:1588214 CCDC74A +HGNC:25267 CCDC74B coiled-coil domain containing 74B protein-coding gene gene with protein product Approved 2q21.1 02q21.1 DKFZp434E2321 2006-02-13 2006-02-16 2015-08-26 91409 ENSG00000152076 OTTHUMG00000131629 uc002tqm.3 NM_207310 "CCDS2155|CCDS58726" Q96LY2 MGI:1919565 CCDC74B +HGNC:51917 CCDC74BP1 coiled-coil domain containing 74B pseudogene 1 pseudogene pseudogene Approved 22q11.21 22q11.21 2015-10-06 2015-10-06 100996538 ENSG00000250261 OTTHUMG00000150880 PGOHUM00000297464 +HGNC:42659 CCDC75P1 coiled-coil domain containing 75 pseudogene 1 pseudogene pseudogene Approved 3p13 03p13 2011-08-12 2011-08-12 344709 ENSG00000182921 OTTHUMG00000158866 NG_022207 PGOHUM00000259830 +HGNC:28203 CCDC77 coiled-coil domain containing 77 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 MGC13183 2006-02-16 2014-11-19 84318 ENSG00000120647 OTTHUMG00000129214 uc001qig.4 AK027638 NM_032358 "CCDS8503|CCDS44781" Q9BR77 12477932 MGI:1914450 RGD:1310710 CCDC77 +HGNC:14153 CCDC78 coiled-coil domain containing 78 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ34512 C16orf25 2000-12-21 2006-02-20 2015-08-24 124093 ENSG00000162004 OTTHUMG00000121176 uc002cjg.3 BC042110 NM_173476 CCDS32353 A2IDD5 24075808 MGI:2685784 RGD:1560244 CCDC78 614666 310451 +HGNC:30649 CCDC80 coiled-coil domain containing 80 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "URB|SSG1|DRO1" steroid sensitive gene 1 2006-03-30 2014-11-18 151887 ENSG00000091986 OTTHUMG00000159265 uc032rxo.2 AY333429 NM_199511 CCDS2968 Q76M96 "15325258|18178152" MGI:1915146 RGD:69421 CCDC80 608298 +HGNC:26281 CCDC81 coiled-coil domain containing 81 protein-coding gene gene with protein product Approved 11q14.2 11q14.2 "FLJ16339|FLJ23514" 2006-03-09 2014-12-03 60494 ENSG00000149201 OTTHUMG00000167213 uc001pbx.3 AK131331 NM_021827 "CCDS8276|CCDS53691" Q6ZN84 25074808 MGI:1918134 RGD:1306766 CCDC81 +HGNC:26282 CCDC82 coiled-coil domain containing 82 protein-coding gene gene with protein product Approved 11q21 11q21 FLJ23518 2006-03-09 2014-11-19 79780 ENSG00000149231 OTTHUMG00000167678 uc058gsk.1 AF245436 NM_024725 CCDS8307 Q8N4S0 12477932 MGI:1913646 RGD:1359666 CCDC82 +HGNC:28535 CCDC83 coiled-coil domain containing 83 protein-coding gene gene with protein product Approved 11q14.1-q14.2 11q14.1-q14.2 "MGC34732|FLJ42119|CT148" 2006-03-10 2016-10-11 220047 ENSG00000150676 OTTHUMG00000166978 uc001pbg.3 AK124113 NM_173556 "CCDS8271|CCDS66196" Q8IWF9 12477932 MGI:1918255 RGD:1594161 CCDC83 +HGNC:30460 CCDC84 coiled-coil domain containing 84 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 DLNB14 2006-03-13 2014-11-19 338657 ENSG00000186166 OTTHUMG00000166348 uc001pul.5 AB094093 NM_198489 CCDS8405 Q86UT8 MGI:2685960 RGD:1597440 CCDC84 +HGNC:29400 CCDC85A coiled-coil domain containing 85A protein-coding gene gene with protein product Approved 2p16.1 02p16.1 KIAA1912 2006-03-29 2015-08-24 114800 ENSG00000055813 OTTHUMG00000152033 uc002rzn.4 AB067499 NM_001080433 CCDS46290 Q96PX6 11572484 MGI:2445069 RGD:1311700 CCDC85A +HGNC:24926 CCDC85B coiled-coil domain containing 85B protein-coding gene gene with protein product Approved 11q13.1 11q13.1 DIPA hepatitis delta antigen interacting protein A 2006-03-29 2014-11-19 11007 ENSG00000175602 OTTHUMG00000166722 uc001ogf.4 BC008796 NM_006848 CCDS8120 Q15834 "8810253|15644333|17873903" MGI:2147607 RGD:1565319 CCDC85B 605360 +HGNC:35459 CCDC85C coiled-coil domain containing 85C protein-coding gene gene with protein product Approved 14q32.2 14q32.2 2009-02-18 2016-10-05 317762 ENSG00000205476 OTTHUMG00000171506 uc010avr.4 NM_001144995 CCDS45161 A6NKD9 MGI:3644008 RGD:1589818 CCDC85C +HGNC:28359 CCDC86 coiled-coil domain containing 86 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 MGC2574 2006-03-15 2015-09-11 79080 ENSG00000110104 OTTHUMG00000167706 uc001nqa.3 AK025974 NM_024098 CCDS7993 Q9H6F5 MGI:1277220 RGD:1359280 CCDC86 611293 +HGNC:25579 CCDC87 coiled-coil domain containing 87 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 FLJ10786 2006-03-15 2014-11-19 55231 ENSG00000182791 OTTHUMG00000167237 uc001oiq.5 BC034469 NM_018219 CCDS8145 Q9NVE4 12477932 MGI:3026882 RGD:1596153 CCDC87 +HGNC:25523 CCDC88A coiled-coil domain containing 88A protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "FLJ10392|APE|GIV|HkRP1|GRDN" "Galpha-interacting vesicle-associated protein|Akt-phosphorylation enhancer|girdin|girders of actin filaments" KIAA1212 KIAA1212 2004-01-13 2007-05-31 2007-05-31 2016-10-05 55704 ENSG00000115355 OTTHUMG00000151915 uc010yoz.2 "AB033038|AF112218" NM_017571 "CCDS33203|CCDS46288|CCDS58710" Q3V6T2 "15749703|15753085" MGI:1925177 RGD:1306694 CCDC88A 609736 459019 +HGNC:26757 CCDC88B coiled-coil domain containing 88B protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "FLJ37970|BRLZ|HkRP3|FLJ00354|GIPIE" "brain leucine zipper protein|GRP78-interacting protein induced by ER stress" CCDC88 coiled-coil domain containing 88 2006-03-16 2007-05-31 2007-05-31 2014-11-18 283234 ENSG00000168071 OTTHUMG00000045419 uc001nzy.4 AK090436 NM_032251 CCDS8072 A6NC98 "15882442|21289099" MGI:1925567 RGD:1311475 CCDC88B 611205 +HGNC:19967 CCDC88C coiled-coil domain containing 88C protein-coding gene gene with protein product Approved 14q32.11-q32.12 14q32.11-q32.12 "DAPLE|HkRP2|SCA40" "Dvl-associating protein with a high frequency of leucine residues|spinocerebellar ataxia 40" KIAA1509 KIAA1509 2003-11-21 2007-05-31 2007-05-31 2016-10-11 440193 ENSG00000015133 OTTHUMG00000171099 uc010aty.4 XM_029353 CCDS45151 Q9P219 "17185515|25062847" MGI:1915589 RGD:1307429 CCDC88C 611204 320663 +HGNC:26762 CCDC89 coiled-coil domain containing 89 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 FLJ38159 2006-03-16 2015-09-11 220388 ENSG00000179071 OTTHUMG00000166976 uc001pau.2 AK095478 NM_152723 CCDS8270 Q8N998 12477932 MGI:1917304 RGD:1305335 CCDC89 +HGNC:1217 CCDC90AP1 coiled-coil domain containing 90A pseudogene 1 pseudogene pseudogene Approved 17p13.3 17p13.3 C17orf23 chromosome 17 open reading frame 23 2000-05-05 2010-06-02 2010-06-02 2010-06-03 53383 NG_026139 +HGNC:28108 CCDC90B coiled-coil domain containing 90B protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "MDS025|MDS011" 2006-10-23 2015-09-11 60492 ENSG00000137500 OTTHUMG00000167078 uc001pae.5 BC048795 NM_021825 "CCDS8266|CCDS66190|CCDS66191" Q9GZT6 11230166 MGI:1913615 RGD:1308637 CCDC90B +HGNC:24855 CCDC91 coiled-coil domain containing 91 protein-coding gene gene with protein product Approved 12p11.22 12p11.22 "p56|FLJ11088|DKFZp779L1558" GGA binding partner 2006-03-17 2014-11-19 55297 ENSG00000123106 OTTHUMG00000169141 uc001riq.4 AK093152 NM_018318 "CCDS8716|CCDS81675" Q7Z6B0 12808037 MGI:1914265 RGD:1359502 CCDC91 +HGNC:29563 CCDC92 coiled-coil domain containing 92 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 FLJ22471 limkain beta 2 2006-03-17 2015-08-24 80212 ENSG00000119242 OTTHUMG00000168725 uc058uvp.1 AK026124 NM_025140 "CCDS9256|CCDS76619" Q53HC0 12477932 MGI:106485 RGD:1601131 CCDC92 +HGNC:52279 CCDC92B coiled-coil domain containing 92B other unknown Approved 17p13.3 17p13.3 2015-12-14 2015-12-14 101928991 ENSG00000261963 OTTHUMG00000178197 XM_017025489 MGI:3588240 +HGNC:25611 CCDC93 coiled-coil domain containing 93 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 FLJ10996 2006-03-24 2016-01-07 54520 ENSG00000125633 OTTHUMG00000058517 uc002tlj.4 BC028609 NM_019044 CCDS2121 Q567U6 25355947 MGI:1918079 RGD:1560504 CCDC93 +HGNC:25518 CCDC94 coiled-coil domain containing 94 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ10374 2006-03-24 2015-01-26 55702 ENSG00000105248 OTTHUMG00000181867 uc002lzv.5 AK001236 NM_018074 CCDS12124 Q9BW85 22952453 MGI:1920136 RGD:1589601 CCDC94 +HGNC:26900 CCDC96 coiled-coil domain containing 96 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 FLJ90575 2006-03-24 2014-12-03 257236 ENSG00000173013 OTTHUMG00000125511 uc003gjv.4 AK075056 NM_153376 CCDS3395 Q2M329 25074808 MGI:1913967 RGD:1305153 CCDC96 +HGNC:28289 CCDC97 coiled-coil domain containing 97 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ40267|MGC20255" 2006-03-31 2014-11-19 90324 ENSG00000142039 OTTHUMG00000182722 uc002oqg.3 BC011577 NM_052848 CCDS12578 Q96F63 12477932 MGI:1196455 RGD:1309393 CCDC97 +HGNC:28097 CCDC102A coiled-coil domain containing 102A protein-coding gene gene with protein product Approved 16q21 16q21 MGC10992 2006-04-10 2016-10-05 92922 ENSG00000135736 OTTHUMG00000133472 uc002elw.4 BC008285 NM_033212 CCDS10784 Q96A19 12477932 MGI:2686927 RGD:1308684 CCDC102A +HGNC:26295 CCDC102B coiled-coil domain containing 102B protein-coding gene gene with protein product Approved 18q22.1 18q22.1 "FLJ23594|HsT1731|AN" "C18orf14|ACY1L" "chromosome 18 open reading frame 14|aminoacylase 1-like" 2004-04-29 2006-04-10 2006-04-10 2015-08-26 79839 ENSG00000150636 OTTHUMG00000132808 uc060pyl.1 AK027247 NM_024781 CCDS11996 Q68D86 14702039 CCDC102B +HGNC:32700 CCDC103 coiled-coil domain containing 103 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "FLJ13094|FLJ34211|PR46b|CILD17" 2006-04-25 2015-03-10 388389 ENSG00000167131 OTTHUMG00000154264 uc060gdg.1 AK023156 NM_213607 "CCDS11490|CCDS58554" Q8IW40 22581229 MGI:1920543 RGD:1562370 CCDC103 614677 303726 +HGNC:26866 CCDC105 coiled-coil domain containing 105 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 FLJ40365 2006-05-08 2014-11-19 126402 ENSG00000160994 OTTHUMG00000183352 uc002nae.3 AK097684 NM_173482 CCDS12322 Q8IYK2 12477932 MGI:1918226 RGD:1594374 CCDC105 +HGNC:30181 CCDC106 coiled-coil domain containing 106 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 HSU79303 2006-05-09 2014-11-19 29903 ENSG00000173581 OTTHUMG00000180907 uc002qlr.4 AF054984 NM_013301 CCDS33118 Q9BWC9 "8619474|9110174" MGI:2385900 RGD:1566222 CCDC106 613478 +HGNC:28465 CCDC107 coiled-coil domain containing 107 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 MGC31967 2006-05-12 2016-10-05 203260 ENSG00000159884 OTTHUMG00000019868 uc011lox.3 AK075523 NM_174923 "CCDS6583|CCDS56573|CCDS56574|CCDS56575" Q8WV48 12477932 MGI:1913423 RGD:1560252 CCDC107 +HGNC:28504 CCDC110 coiled-coil domain containing 110 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "KM-HN-1|MGC33607|CT52" cancer/testis antigen 52 2006-10-23 2014-11-19 256309 ENSG00000168491 OTTHUMG00000160415 uc003ixu.5 AB080722 NM_152775 "CCDS3843|CCDS47170" Q8TBZ0 18160854 MGI:2685018 RGD:1564538 CCDC110 609488 +HGNC:28599 CCDC112 coiled-coil domain containing 112 protein-coding gene gene with protein product Approved 5q22.3 05q22.3 MGC39633 2006-05-23 2014-11-19 153733 ENSG00000164221 OTTHUMG00000128894 uc063gda.1 BC031242 NM_152549 "CCDS4117|CCDS34213" Q8NEF3 12477932 MGI:1918800 RGD:1561942 CCDC112 +HGNC:25002 CCDC113 coiled-coil domain containing 113 protein-coding gene gene with protein product Approved 16q21 16q21 "HSPC065|DKFZp434N1418" 2006-06-13 2014-12-03 29070 ENSG00000103021 OTTHUMG00000133489 uc002ene.4 AL136785 NM_014157 "CCDS10795|CCDS45497" Q9H0I3 "11230166|11042152|25074808" MGI:3606076 RGD:1565763 CCDC113 616070 +HGNC:26560 CCDC114 coiled-coil domain containing 114 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "FLJ32926|CILD20" 2006-06-21 2016-10-05 93233 ENSG00000105479 OTTHUMG00000156161 uc002pir.3 BC025752 NM_144577 CCDS12714 Q96M63 "23261302|23261303" MGI:2446120 RGD:1308141 CCDC114 615038 323398 +HGNC:28178 CCDC115 coiled-coil domain containing 115 protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "MGC12981|FLJ30131|ccp1" 2006-07-03 2016-07-25 84317 ENSG00000136710 OTTHUMG00000131631 uc002tqy.3 AK054693 NM_032357 "CCDS2159|CCDS82512" Q96NT0 "21118521|26833332" MGI:1916918 RGD:1304653 CCDC115 613734 +HGNC:26688 CCDC116 coiled-coil domain containing 116 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 FLJ36046 2006-06-27 2014-12-03 164592 ENSG00000161180 OTTHUMG00000150821 uc002zve.4 BC033499 NM_152612 CCDS13791 Q8IYX3 25074808 MGI:1924122 RGD:1310080 CCDC116 +HGNC:26599 CCDC117 coiled-coil domain containing 117 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 FLJ33814 2006-06-27 2014-11-19 150275 ENSG00000159873 OTTHUMG00000151091 uc003aeb.5 AK091133 NM_173510 "CCDS13846|CCDS63435|CCDS63436" Q8IWD4 12477932 MGI:2144383 RGD:1561762 CCDC117 +HGNC:28910 CCDC120 coiled-coil domain containing 120 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 JM11 2006-07-11 2016-04-25 90060 ENSG00000147144 OTTHUMG00000021509 uc064zdh.1 BC008769 NM_033626 "CCDS14316|CCDS55413|CCDS55414" Q96HB5 25326380 MGI:1859619 RGD:1561596 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CCDC120 CCDC120 300947 +HGNC:25833 CCDC121 coiled-coil domain containing 121 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "FLJ43364|FLJ13646" 2006-07-26 2016-10-05 79635 ENSG00000176714 OTTHUMG00000128427 uc002rle.4 AK125354 NM_024584 "CCDS1759|CCDS46247" Q6ZUS5 MGI:1914906 RGD:1566190 CCDC121 +HGNC:26478 CCDC122 coiled-coil domain containing 122 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 FLJ31846 2006-08-08 2014-11-19 160857 ENSG00000151773 OTTHUMG00000017413 uc010acf.4 AK056408 NM_144974 CCDS9390 Q5T0U0 MGI:1918358 RGD:2321506 CCDC122 613408 +HGNC:25171 CCDC124 coiled-coil domain containing 124 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 2006-08-08 2016-01-14 115098 ENSG00000007080 OTTHUMG00000183405 uc010xpz.3 BC013949 NM_138442 CCDS12369 Q96CT7 23894443 MGI:1916403 RGD:1310931 CCDC124 +HGNC:28924 CCDC125 coiled-coil domain containing 125 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 KENAE 2006-08-09 2014-11-19 202243 ENSG00000183323 OTTHUMG00000131259 uc003jvv.2 AB024691 NM_176816 "CCDS4000|CCDS75255" Q86Z20 MGI:1923291 RGD:1561673 CCDC125 613781 +HGNC:22398 CCDC126 coiled-coil domain containing 126 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 FLJ23031 2006-08-15 2014-11-19 90693 ENSG00000169193 OTTHUMG00000128461 uc003swl.3 BC012427 NM_138771 CCDS5384 Q96EE4 12477932 MGI:1889376 RGD:1561171 CCDC126 +HGNC:30520 CCDC127 coiled-coil domain containing 127 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 FLJ25701 2006-08-18 2015-09-11 133957 ENSG00000164366 OTTHUMG00000161586 uc003jam.2 AK098567 NM_145265 CCDS3852 Q96BQ5 12477932 MGI:1914683 RGD:735106 CCDC127 +HGNC:27363 CCDC129 coiled-coil domain containing 129 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 FLJ38344 2006-08-21 2014-11-19 223075 ENSG00000180347 OTTHUMG00000128611 uc064cpm.1 AK128026 NM_194300 "CCDS5435|CCDS59050|CCDS75577" Q6ZRS4 14702039 MGI:2685304 RGD:1561131 CCDC129 +HGNC:28118 CCDC130 coiled-coil domain containing 130 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 MGC10471 2006-08-22 2014-11-19 81576 ENSG00000104957 OTTHUMG00000180837 uc060uit.1 AF250306 NM_030818 CCDS12296 P13994 3203696 MGI:1914986 RGD:1307598 CCDC130 +HGNC:26185 CCDC134 coiled-coil domain containing 134 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 FLJ22349 2006-10-17 2014-11-19 79879 ENSG00000100147 OTTHUMG00000151262 uc003bbh.2 AL021453 NM_024821 "CCDS33654|CCDS77680" Q9H6E4 18087676 MGI:1923707 RGD:1559657 CCDC134 +HGNC:22225 CCDC136 coiled-coil domain containing 136 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "KIAA1793|NAG6|DKFZP434G156" 2007-05-02 2016-10-05 64753 ENSG00000128596 OTTHUMG00000158310 uc003vnv.3 NM_022742 "CCDS47704|CCDS56510" Q96JN2 15112360 MGI:1918128 RGD:1564459 CCDC136 611902 +HGNC:33451 CCDC137 coiled-coil domain containing 137 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 MGC16597 2007-05-02 2016-01-14 339230 ENSG00000185298 OTTHUMG00000178064 uc002kbc.5 BC009369 XM_017024573 CCDS42400 Q6PK04 MGI:1914541 RGD:1591129 CCDC137 614271 +HGNC:33459 CCDC137P coiled-coil domain containing 137 pseudogene pseudogene pseudogene Approved 3p13 03p13 2007-07-19 2014-11-18 642802 NG_009746 +HGNC:26531 CCDC138 coiled-coil domain containing 138 protein-coding gene gene with protein product Approved 2q13 02q13 FLJ32745 2007-05-02 2014-11-19 165055 ENSG00000163006 OTTHUMG00000130980 uc002ten.2 AK057307 NM_144978 "CCDS2080|CCDS77447" Q96M89 12477932 MGI:1923388 RGD:1566050 CCDC138 +HGNC:26514 CCDC140 coiled-coil domain containing 140 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 FLJ32447 2007-07-10 2014-11-19 151278 ENSG00000163081 OTTHUMG00000133154 uc002vnb.1 AK057009 NM_153038 CCDS2452 Q96MF4 CCDC140 +HGNC:26821 CCDC141 coiled-coil domain containing 141 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 "FLJ39502|CAMDI" coiled-coil protein associated with myosin II and DISC1 Immunoglobulin like domain containing 594 2007-07-10 2015-08-24 285025 ENSG00000163492 OTTHUMG00000132578 uc002une.2 AK096821 NM_173648 CCDS82538 Q6ZP82 20956536 MGI:1919735 RGD:1593250 CCDC141 616031 +HGNC:25889 CCDC142 coiled-coil domain containing 142 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 FLJ14397 2007-07-17 2014-11-19 84865 ENSG00000135637 OTTHUMG00000129962 uc002slq.4 AK075543 NM_032779 CCDS1945 Q17RM4 MGI:3045292 RGD:1561779 CCDC142 +HGNC:29072 CCDC144A coiled-coil domain containing 144A protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "KIAA0565|FLJ43983" 2007-08-06 2015-08-26 9720 ENSG00000170160 OTTHUMG00000059178 uc002gqk.2 BC133019 XM_017025429 CCDS45621 A2RUR9 "9628581|11997339" CCDC144A +HGNC:26704 CCDC144B coiled-coil domain containing 144B (pseudogene) pseudogene pseudogene Approved 17p11.2 17p11.2 FLJ36492 coiled-coil domain containing 144B 2007-08-07 2011-09-02 2012-11-19 284047 ENSG00000154874 OTTHUMG00000059531 AK093811 NM_182568 Q3MJ40 11997339 CCDC144B +HGNC:29073 CCDC144CP coiled-coil domain containing 144C, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 CCDC144C coiled-coil domain containing 144C 2007-08-06 2013-03-14 2013-03-14 2013-03-14 348254 ENSG00000154898 OTTHUMG00000059513 NR_023380 Q8IYA2 11997339 +HGNC:33735 CCDC144NL coiled-coil domain containing 144 family, N-terminal like protein-coding gene gene with protein product Approved 17p11.2 17p11.2 MGC87631 2009-01-15 2014-11-19 339184 ENSG00000205212 OTTHUMG00000132271 uc002gyf.3 NM_001004306 CCDS32591 Q6NUI1 CCDC144NL +HGNC:51340 CCDC144NL-AS1 CCDC144NL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 2014-10-10 2014-10-10 440416 ENSG00000233098 OTTHUMG00000178937 AK057473 NR_104185 +HGNC:29296 CCDC146 coiled-coil domain containing 146 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 KIAA1505 2007-12-06 2014-12-03 57639 ENSG00000135205 OTTHUMG00000162595 uc003uga.3 BC029458 NM_020879 CCDS34671 Q8IYE0 "10819331|25074808" MGI:1922422 RGD:1559535 CCDC146 +HGNC:25191 CCDC148 coiled-coil domain containing 148 protein-coding gene gene with protein product Approved 2q24.1 02q24.1 MGC125588 2007-12-07 2014-11-19 130940 ENSG00000153237 OTTHUMG00000153973 uc002tzq.4 NM_138803 "CCDS33304|CCDS77476" Q8NFR7 MGI:3039583 RGD:1561169 CCDC148 +HGNC:44134 CCDC148-AS1 CCDC148 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q24.1 02q24.1 CCDC148 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 554201 ENSG00000227480 OTTHUMG00000153964 uc021vro.1 BC021739 NR_038850 +HGNC:25405 CCDC149 coiled-coil domain containing 149 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 DKFZp761B107 2008-03-03 2016-04-25 91050 ENSG00000181982 OTTHUMG00000160308 uc011bxr.3 NM_173463 "CCDS33967|CCDS47036|CCDS82914" Q6ZUS6 17457313 MGI:2685293 RGD:1582968 CCDC149 +HGNC:26834 CCDC150 coiled-coil domain containing 150 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 FLJ39660 2008-04-10 2015-09-11 284992 ENSG00000144395 OTTHUMG00000154475 uc002utp.1 NM_001080539 CCDS46478 Q8NCX0 MGI:1925266 RGD:1304775 CCDC150 +HGNC:50280 CCDC150P1 coiled-coil domain containing 150 pseudogene 1 pseudogene pseudogene Approved 12q24.31 12q24.31 2014-03-26 2014-03-26 100420678 ENSG00000256304 OTTHUMG00000168923 NG_024048 PGOHUM00000239595 +HGNC:28303 CCDC151 coiled-coil domain containing 151 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC20983 2008-04-10 2014-11-19 115948 ENSG00000198003 OTTHUMG00000182028 uc002mrs.5 NM_145045 "CCDS42501|CCDS77237" A5D8V7 24067530 MGI:1924859 RGD:1310048 CCDC151 615956 411117 +HGNC:34438 CCDC152 coiled-coil domain containing 152 protein-coding gene gene with protein product Approved 5p12 05p12 LOC100129792 2008-07-14 2015-08-24 100129792 ENSG00000198865 OTTHUMG00000162141 uc003jmx.4 XM_001717416 CCDS47203 Q4G0S7 MGI:3641617 RGD:1561503 CCDC152 +HGNC:27446 CCDC153 coiled-coil domain containing 153 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 LOC283152 2008-07-18 2014-11-19 283152 ENSG00000248712 OTTHUMG00000156903 uc058ihz.1 NM_001033658 CCDS44753 Q494R4 12477932 MGI:2448587 RGD:1305351 CCDC153 +HGNC:34454 CCDC154 coiled-coil domain containing 154 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 LOC645811 C16orf29 chromosome 16 open reading frame 29 2008-08-07 2014-11-19 645811 ENSG00000197599 OTTHUMG00000154097 uc059oxj.1 NM_001143980 A6NI56 MGI:2685163 RGD:1559998 CCDC154 +HGNC:26520 CCDC155 coiled-coil domain containing 155 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "FLJ32658|KASH5" 2008-08-07 2014-01-21 147872 ENSG00000161609 OTTHUMG00000183170 uc002pnm.3 NM_144688 CCDS46140 Q8N6L0 MGI:2687329 RGD:1561972 CCDC155 +HGNC:33854 CCDC157 coiled-coil domain containing 157 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 2009-03-05 2014-11-19 550631 ENSG00000187860 OTTHUMG00000151007 uc011akv.3 BC018040 NM_001017437 "CCDS33632|CCDS82707" Q569K6 MGI:3041210 RGD:1584653 CCDC157 +HGNC:26374 CCDC158 coiled-coil domain containing 158 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 FLJ25770 2009-04-06 2015-09-11 339965 ENSG00000163749 OTTHUMG00000160916 uc003hkb.5 BC035224 NM_001042784 CCDS43242 Q5M9N0 12477932 MGI:2444555 RGD:1308523 CCDC158 +HGNC:26996 CCDC159 coiled-coil domain containing 159 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 2009-09-28 2010-02-17 126075 ENSG00000183401 OTTHUMG00000182022 uc010xlt.3 BC038439 NM_001080503 CCDS45976 P0C7I6 MGI:1914369 RGD:1308031 CCDC159 +HGNC:37286 CCDC160 coiled-coil domain containing 160 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 2009-09-28 2010-02-17 347475 ENSG00000203952 OTTHUMG00000164183 uc065bea.1 BC017958 NM_001101357 CCDS48171 A6NGH7 MGI:3588225 RGD:1597791 CCDC160 +HGNC:21565 CCDC162P coiled-coil domain containing 162, pseudogene pseudogene pseudogene Approved 6q21 06q21 "bA425D10.7|bA425D10.3" "C6orf184|C6orf185|CCDC162" "chromosome 6 open reading frame 184|chromosome 6 open reading frame 185" 2003-11-26 2011-04-28 2011-04-28 2014-11-19 221262 ENSG00000203799 OTTHUMG00000015342 NR_028595 A2VCL2 MGI:1923223 RGD:1561147 +HGNC:27003 CCDC163 coiled-coil domain containing 163 other unknown Approved 1p34.1 01p34.1 LOC126661 "C1orf231|CCDC163P" "chromosome 1 open reading frame 231|coiled-coil domain containing 163, pseudogene" 2009-09-25 2016-07-20 2016-07-20 2016-07-20 126661 ENSG00000280670 OTTHUMG00000007741 uc001cnw.4 BC047421 NM_001102601 18672041 MGI:1915644 RGD:1564486 +HGNC:41910 CCDC166 coiled-coil domain containing 166 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 2011-06-20 2011-06-20 100130274 ENSG00000255181 OTTHUMG00000165148 uc011lkr.2 NM_001162914 CCDS55280 P0CW27 MGI:1925902 RGD:1588167 CCDC166 +HGNC:21239 CCDC167 coiled-coil domain containing 167 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 dJ153P14.2 C6orf129 chromosome 6 open reading frame 129 2003-05-29 2011-07-04 2011-07-04 2015-08-24 154467 ENSG00000198937 OTTHUMG00000014625 uc003ont.4 NM_138493 CCDS34441 Q9P0B6 MGI:1915847 RGD:1588733 CCDC167 +HGNC:26851 CCDC168 coiled-coil domain containing 168 protein-coding gene gene with protein product Approved 13q33.1 13q33.1 FLJ40176 C13orf40 chromosome 13 open reading frame 40 2010-08-05 2011-08-09 2011-08-09 2015-08-26 643677 ENSG00000175820 OTTHUMG00000187287 uc001vpm.4 NM_001146197 CCDS73596 Q8NDH2 MGI:3647616 RGD:7680407 +HGNC:34361 CCDC169 coiled-coil domain containing 169 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "RP11-251J8.1|LOC728591" C13orf38 chromosome 13 open reading frame 38 2008-07-02 2011-08-09 2011-08-09 2011-08-09 728591 ENSG00000242715 OTTHUMG00000016731 uc010tem.3 NM_001144981 "CCDS45027|CCDS45028|CCDS45029|CCDS53863|CCDS55897" A6NNP5 MGI:2444356 RGD:1593170 CCDC169 +HGNC:38866 CCDC169-SOHLH2 CCDC169-SOHLH2 readthrough other readthrough Approved 13q13.3 13q13.3 C13orf38-SOHLH2 C13orf38-SOHLH2 readthrough 2011-02-21 2011-08-09 2011-11-03 2014-11-19 100526761 ENSG00000250709 OTTHUMG00000162258 uc010tei.3 NM_001198910.1 CCDS55896 MGI:1921684 +HGNC:21177 CCDC170 coiled-coil domain containing 170 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "FLJ23305|bA282P11.1" C6orf97 chromosome 6 open reading frame 97 2003-05-22 2012-03-26 2012-03-26 2014-11-19 80129 ENSG00000120262 OTTHUMG00000015839 uc003qol.4 AK026958 NM_025059 CCDS43515 Q8IYT3 MGI:2685067 RGD:1310945 +HGNC:29828 CCDC171 coiled-coil domain containing 171 protein-coding gene gene with protein product Approved 9p22.3 09p22.3 "FLJ39267|FLJ46740|Em:AL513423.1|bA778P13.1|bA536D16.1" myosin tail domain containing protein C9orf93 chromosome 9 open reading frame 93 2004-03-01 2012-03-26 2012-03-26 2016-10-05 203238 ENSG00000164989 OTTHUMG00000019584 uc003zmd.4 AY422473 NM_173550 CCDS6481 Q6TFL3 14702039 MGI:1922152 RGD:1560884 +HGNC:30524 CCDC172 coiled-coil domain containing 172 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 MGC35062 C10orf96 chromosome 10 open reading frame 96 2004-04-07 2012-05-31 2012-05-31 2016-10-05 374355 ENSG00000182645 OTTHUMG00000019098 uc001lck.3 BC044830 NM_198515 CCDS31291 P0C7W6 12477932 MGI:1922895 RGD:1359412 +HGNC:25064 CCDC173 coiled-coil domain containing 173 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 LOC129881 hypothetical LOC129881 C2orf77 chromosome 2 open reading frame 77 2008-07-18 2012-08-07 2012-08-07 2014-11-19 129881 ENSG00000154479 OTTHUMG00000154116 uc002ufe.3 "BC015980|BC117445" NM_001085447 CCDS46445 Q0VFZ6 12477932 MGI:1923100 RGD:1308818 +HGNC:28033 CCDC174 coiled-coil domain containing 174 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 FLJ33839 C3orf19 chromosome 3 open reading frame 19 2005-01-10 2012-09-20 2012-09-20 2014-11-19 51244 ENSG00000154781 OTTHUMG00000129837 uc003byw.4 AF151046 NM_016474 CCDS2620 Q6PII3 11042152 MGI:2444652 RGD:1305225 616735 +HGNC:19847 CCDC175 coiled-coil domain containing 175 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 C14orf38 chromosome 14 open reading frame 38 2002-11-27 2012-09-24 2012-09-24 2012-09-24 729665 ENSG00000151838 OTTHUMG00000171096 uc021rtw.2 NM_001164399 CCDS53898 P0C221 MGI:1921186 RGD:1560894 CCDC175 +HGNC:23243 CCDC177 coiled-coil domain containing 177 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 PLPL myelin proteolipid protein-like protein C14orf162 chromosome 14 open reading frame 162 2003-10-29 2012-10-03 2012-10-03 2015-01-29 56936 ENSG00000267909 OTTHUMG00000187379 uc010aqy.5 AF284217 NM_001271507 CCDS59245 Q9NQR7 MGI:2686414 RGD:1561115 +HGNC:29588 CCDC178 coiled-coil domain containing 178 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 FLJ44050 C18orf34 chromosome 18 open reading frame 34 2004-06-02 2012-10-15 2012-10-15 2014-11-18 374864 ENSG00000166960 OTTHUMG00000132279 uc002kxo.3 AK126038 NM_198995 "CCDS11906|CCDS42424|CCDS77174" Q5BJE1 MGI:1918200 RGD:1308160 +HGNC:44653 CCDC179 coiled-coil domain containing 179 protein-coding gene gene with protein product Approved 11p14.3 11p14.3 2012-12-12 2015-08-26 100500938 ENSG00000255359 OTTHUMG00000166074 uc021qfb.3 NM_001195637 CCDS58127 H3BU77 MGI:1922779 RGD:1559980 +HGNC:29303 CCDC180 coiled-coil domain containing 180 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "DKFZp434I2420|BDAG1" Behcet's Disease Associated Gene 1 "KIAA1529|C9orf174" "KIAA1529|chromosome 9 open reading frame 174" 2004-01-05 2013-03-08 2013-03-08 2016-04-25 100499483 ENSG00000197816 OTTHUMG00000167001 uc004axg.3 AK123391 NM_020893 CCDS35077 Q9P1Z9 10819331 MGI:2685871 RGD:6498132 +HGNC:28051 CCDC181 coiled-coil domain containing 181 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 FLJ25846 C1orf114 chromosome 1 open reading frame 114 2005-06-09 2013-03-14 2013-03-14 2016-10-05 57821 ENSG00000117477 OTTHUMG00000035448 uc009wvq.2 AL049687 NM_021179 "CCDS1279|CCDS72979" Q5TID7 MGI:1922145 RGD:1309708 +HGNC:49392 CCDC182 coiled-coil domain containing 182 protein-coding gene gene with protein product Approved 17q22 17q22 2013-11-05 2013-11-05 101927581 ENSG00000166329 OTTHUMG00000132063 NM_001282544 CCDS62263 A6NF36 MGI:1921547 RGD:1586338 +HGNC:28236 CCDC183 coiled-coil domain containing 183 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "MGC15438|bA216L13.7" KIAA1984 KIAA1984 2004-02-19 2013-12-06 2013-12-06 2014-11-18 84960 ENSG00000213213 OTTHUMG00000159445 AB075864 NM_032874 CCDS43906 Q5T5S1 11853319 MGI:1924308 RGD:1560370 615955 +HGNC:44105 CCDC183-AS1 CCDC183 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 KIAA1984-AS1 "KIAA1984 antisense RNA 1 (non-protein coding)|KIAA1984 antisense RNA 1" 2012-06-28 2013-12-06 2013-12-06 2013-12-06 100131193 ENSG00000228544 OTTHUMG00000020946 AK055547 NR_024580 +HGNC:33749 CCDC184 coiled-coil domain containing 184 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 LOC387856 C12orf68 chromosome 12 open reading frame 68 2008-07-25 2014-03-19 2014-03-19 2014-03-19 387856 ENSG00000177875 OTTHUMG00000169902 NM_001013635 CCDS31785 Q52MB2 MGI:2146066 RGD:1593153 +HGNC:26654 CCDC185 coiled-coil domain containing 185 protein-coding gene gene with protein product Approved 1q41 01q41 FLJ35728 C1orf65 chromosome 1 open reading frame 65 2005-05-17 2014-04-11 2014-04-11 2016-10-05 164127 ENSG00000178395 OTTHUMG00000037987 AK093047 NM_152610 CCDS1537 Q8N715 12477932 MGI:3618292 RGD:1560145 +HGNC:24349 CCDC186 coiled-coil domain containing 186 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "FLJ10188|FLJ35301" C10orf118 chromosome 10 open reading frame 118 2004-04-20 2014-05-30 2014-05-30 2016-10-05 55088 ENSG00000165813 OTTHUMG00000019081 AL834368 NM_018017 "CCDS7587|CCDS81506" Q7Z3E2 12783626 MGI:2445022 RGD:1307158 +HGNC:30942 CCDC187 coiled-coil domain containing 187 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 MGC50722 2015-09-17 2015-09-17 399693 ENSG00000260220 OTTHUMG00000188591 XM_011518679 CCDS78462 A0A096LP49 25751143 MGI:3045295 RGD:1565512 +HGNC:51899 CCDC188 coiled-coil domain containing 188 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2015-09-17 2015-09-17 388849 ENSG00000234409 OTTHUMG00000150751 XM_005261238 H7C350 MGI:3647803 RGD:1563782 +HGNC:28078 CCDC189 coiled-coil domain containing 189 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC104706 C16orf93 chromosome 16 open reading frame 93 2009-04-06 2015-10-06 2015-10-06 2016-04-25 90835 ENSG00000196118 OTTHUMG00000167926 BC042548 NM_001014979 "CCDS32434|CCDS55993" A1A4V9 MGI:2685012 RGD:1593368 +HGNC:28736 CCDC190 coiled-coil domain containing 190 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 MGC48998 C1orf110 chromosome 1 open reading frame 110 2005-06-07 2015-10-06 2015-10-06 2015-10-06 339512 ENSG00000185860 OTTHUMG00000034421 BC040018 NM_178550 CCDS44269 Q86UF4 12477932 MGI:1925715 RGD:1560672 +HGNC:29272 CCDC191 coiled-coil domain containing 191 protein-coding gene gene with protein product Approved 3q13.31 03q13.31 KIAA1407 KIAA1407 2005-01-10 2015-10-07 2015-10-07 2015-10-07 57577 ENSG00000163617 OTTHUMG00000159337 AF509494 NM_020817 CCDS2977 Q8NCU4 10718198 MGI:1922661 RGD:1566314 +HGNC:49566 CCDC192 coiled-coil domain containing 192 protein-coding gene gene with protein product Approved 5q23.2-q23.3 05q23.2-q23.3 LINC01183 "long intergenic non-protein coding RNA 1183|coiled-coil domain containing" 2014-01-15 2015-12-18 2015-12-18 2016-10-11 728586 ENSG00000230561 OTTHUMG00000163284 AB072738 XM_017009805 CCDS83022 P0DO97 MGI:1922694 +HGNC:51693 CCEPR cervical carcinoma expressed PCNA regulatory lncRNA non-coding RNA RNA, long non-coding Approved 10q21.1 10q21.1 CCHE1 cervical carcinoma high-expressed lncRNA 1 2015-08-27 2015-12-04 2015-12-04 105682749 NR_131782 25921283 +HGNC:28373 CCER1 coiled-coil glutamate rich protein 1 protein-coding gene gene with protein product Approved 12q21.33 12q21.33 MGC26598 C12orf12 "chromosome 12 open reading frame 12|coiled-coil glutamate-rich protein 1" 2005-02-25 2012-05-30 2015-11-05 2015-11-05 196477 ENSG00000197651 OTTHUMG00000170070 uc001tbj.3 BC024183 NM_152638 CCDS9036 Q8TC90 17967063 MGI:1913966 RGD:1560042 +HGNC:44662 CCER2 coiled-coil glutamate rich protein 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 coiled-coil glutamate-rich protein 2 2014-01-02 2015-11-05 2015-11-05 643669 ENSG00000262484 OTTHUMG00000177374 NM_001243212 CCDS58661 I3L3R5 MGI:3645242 RGD:6502457 +HGNC:13930 CCHCR1 coiled-coil alpha-helical rod protein 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 HCR C6orf18 chromosome 6 open reading frame 18 2002-11-18 2005-02-16 2005-02-15 2016-10-05 54535 ENSG00000204536 OTTHUMG00000031112 uc003nsr.4 AF216493 NM_019052 "CCDS4695|CCDS43445|CCDS47397" Q8TD31 "10888604|10545595" MGI:2385321 RGD:1302992 CCHCR1 605310 +HGNC:1568 CCIN calicin protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "KBTBD14|BTBD20" BTB domain containing 861 1998-03-25 2016-10-05 881 ENSG00000185972 OTTHUMG00000019901 uc003zzb.5 Z46967 NM_005893 CCDS6599 Q13939 7641791 MGI:3045316 RGD:1359369 CCIN 603960 +HGNC:1569 CCK cholecystokinin protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "prepro-cholecystokinin|cholecystokinin triacontatriapeptide" Endogenous ligands 542 2001-06-22 2014-11-19 885 ENSG00000187094 OTTHUMG00000131796 uc003cld.2 NM_000729 CCDS2696 P06307 3856870 MGI:88297 RGD:2288 CCK 118440 +HGNC:1570 CCKAR cholecystokinin A receptor protein-coding gene gene with protein product Approved 4p15.2 04p15.2 Cholecystokinin receptors 224 1993-07-13 2015-08-24 886 ENSG00000163394 OTTHUMG00000128567 uc003gse.2 L19315 NM_000730 CCDS3438 P32238 MGI:99478 RGD:2289 CCKAR 118444 objectId:76 +HGNC:1571 CCKBR cholecystokinin B receptor protein-coding gene gene with protein product Approved 11p15.4 11p15.4 Cholecystokinin receptors 224 1993-07-13 2015-08-24 887 ENSG00000110148 OTTHUMG00000133380 uc001mcp.4 D13305 NM_176875 "CCDS7761|CCDS81550" P32239 1280419 MGI:99479 RGD:2290 CCKBR 118445 objectId:77 +HGNC:10609 CCL1 C-C motif chemokine ligand 1 protein-coding gene gene with protein product Approved 17q12 17q12 "I-309|TCA3|P500|SISe" "inflammatory cytokine I-309|T lymphocyte-secreted protein I-309" SCYA1 "small inducible cytokine A1 (I-309, homologous to mouse Tca-3)|chemokine (C-C motif) ligand 1" "Chemokine ligands|Endogenous ligands" "483|542" 1990-07-05 2002-08-23 2016-03-01 2016-10-05 6346 ENSG00000108702 OTTHUMG00000132888 uc002hid.3 M57506 NM_002981 CCDS11282 P22362 "2212659|10409433" MGI:98258 RGD:1586495 CCL1 182281 +HGNC:10618 CCL2 C-C motif chemokine ligand 2 protein-coding gene gene with protein product Approved 17q12 17q12 "MCP1|MCP-1|MCAF|SMC-CF|GDCF-2|HC11|MGC9434" "monocyte chemotactic protein 1, homologous to mouse Sig-je|monocyte chemoattractant protein-1|monocyte chemotactic and activating factor|monocyte secretory protein JE|small inducible cytokine subfamily A (Cys-Cys), member 2" SCYA2 "small inducible cytokine A2 (monocyte chemotactic protein 1, homologous to mouse Sig-je)|chemokine (C-C motif) ligand 2" "Chemokine ligands|Endogenous ligands" "483|542" 1990-07-05 2002-08-23 2016-03-01 2016-10-05 6347 ENSG00000108691 OTTHUMG00000132887 uc002hhy.4 BC009716 NM_002982 CCDS11277 P13500 2004761 MGI:98259 RGD:3645 CCL2 158105 +HGNC:10627 CCL3 C-C motif chemokine ligand 3 protein-coding gene gene with protein product Approved 17q12 17q12 "G0S19-1|LD78ALPHA|MIP-1-alpha" SCYA3 "small inducible cytokine A3 (homologous to mouse Mip-1a)|chemokine (C-C motif) ligand 3" "Chemokine ligands|Endogenous ligands" "483|542" 1990-07-05 2002-08-23 2016-03-01 2016-03-01 6348 ENSG00000277632 OTTHUMG00000188413 uc032gca.3 M23178 NM_002983 CCDS11307 P10147 MGI:98260 RGD:3647 CCL3 182283 +HGNC:10628 CCL3L1 C-C motif chemokine ligand 3 like 1 protein-coding gene gene with protein product Approved 17q12 alternate reference locus 17q12 alternate reference locus "G0S19-2|LD78BETA" "D17S1718|SCYA3L|SCYA3L1" "small inducible cytokine A3-like 1|chemokine (C-C motif) ligand 3-like 1" Chemokine ligands 483 1993-11-04 2002-08-23 2016-03-01 2016-03-01 6349 OTTHUMG00000191291 uc032guk.3 X52149 NM_021006 P16619 "1972563|1296815" CCL3L1 601395 +HGNC:30554 CCL3L3 C-C motif chemokine ligand 3 like 3 protein-coding gene gene with protein product Approved 17q12 17q12 MGC12815 chemokine (C-C motif) ligand 3-like 3 Chemokine ligands 483 2005-04-28 2016-03-01 2016-03-01 414062 ENSG00000276085 OTTHUMG00000188419 uc002hlf.4 BC007783 NM_001001437 CCDS32626 P16619 12477932 MGI:98260 CCL3L3 609468 +HGNC:10629 CCL3P1 C-C motif chemokine ligand 3 pseudogene 1 pseudogene pseudogene Approved 17q12 alternate reference locus 17q12 alternate reference locus LD78gamma "SCYA3L2|CCL3L2" "small inducible cytokine A3-like 2|chemokine (C-C motif) ligand 3-like 2|chemokine (C-C motif) ligand 3 pseudogene 1" 1995-07-11 2010-10-11 2016-03-01 2016-03-01 390788 D12592 NG_004113 1296815 609467 +HGNC:10630 CCL4 C-C motif chemokine ligand 4 protein-coding gene gene with protein product Approved 17q12 17q12 "MIP-1-beta|Act-2|AT744.1" "LAG1|SCYA4" "small inducible cytokine A4 (homologous to mouse Mip-1b)|chemokine (C-C motif) ligand 4" "Chemokine ligands|Endogenous ligands" "483|542" 1990-07-05 2002-08-23 2016-03-01 2016-03-01 6351 ENSG00000275302 OTTHUMG00000188414 uc002hkw.3 M23502 NM_002984 CCDS11308 P13236 1972563 MGI:98261 RGD:620441 CCL4 182284 +HGNC:10631 CCL4L1 C-C motif chemokine ligand 4 like 1 protein-coding gene gene with protein product Approved 17q12 alternate reference locus 17q12 alternate reference locus "AT744.2|LAG-1" "SCYA4L|CCL4L" "small inducible cytokine A4-like|chemokine (C-C motif) ligand 4-like|chemokine (C-C motif) ligand 4-like 1" Chemokine ligands 483 1999-05-17 2005-04-27 2016-03-01 2016-03-01 388372 X53682 NM_001001435 CCDS32627 Q8NHW4 "8661057|1972563|15028295" CCL4L1 603782 +HGNC:24066 CCL4L2 C-C motif chemokine ligand 4 like 2 protein-coding gene gene with protein product Approved 17q12 17q12 chemokine (C-C motif) ligand 4-like 2 Chemokine ligands 483 2005-04-27 2016-03-01 2016-03-01 9560 ENSG00000276070 OTTHUMG00000188420 uc060mpu.1 NM_207007 "CCDS76999|CCDS77000|CCDS77001|CCDS77002|CCDS77003|CCDS77004|CCDS77005" Q8NHW4 15028295 CCL4L2 610757 +HGNC:10632 CCL5 C-C motif chemokine ligand 5 protein-coding gene gene with protein product Approved 17q12 17q12 "RANTES|SISd|TCP228|MGC17164" "T-cell specific protein p288|T-cell specific RANTES protein|SIS-delta|regulated upon activation, normally T-expressed, and presumably secreted|beta-chemokine RANTES|small inducible cytokine subfamily A (Cys-Cys), member 5" "D17S136E|SCYA5" "small inducible cytokine A5 (RANTES)|chemokine (C-C motif) ligand 5" "Chemokine ligands|Endogenous ligands" "483|542" 1990-07-05 2002-08-23 2016-03-01 2016-03-01 6352 ENSG00000271503 OTTHUMG00000188396 uc060eeh.1 AF043341 NM_002985 CCDS11300 P13501 1691736 MGI:98262 RGD:69069 CCL5 187011 +HGNC:10634 CCL7 C-C motif chemokine ligand 7 protein-coding gene gene with protein product Approved 17q12 17q12 "MCP-3|NC28|FIC|MARC|MCP3" "monocyte chemoattractant protein 3|monocyte chemotactic protein 3" "SCYA6|SCYA7" "small inducible cytokine A7 (monocyte chemotactic protein 3)|chemokine (C-C motif) ligand 7" "Chemokine ligands|Endogenous ligands" "483|542" 1993-11-04 2002-08-23 2016-03-01 2016-10-05 6354 ENSG00000108688 OTTHUMG00000132889 uc002hhz.5 AF043338 NM_006273 CCDS11278 P80098 8461011 MGI:99512 RGD:1359152 CCL7 158106 +HGNC:10635 CCL8 C-C motif chemokine ligand 8 protein-coding gene gene with protein product Approved 17q12 17q12 "MCP-2|HC14" SCYA8 "small inducible cytokine subfamily A (Cys-Cys), member 8 (monocyte chemotactic protein 2)|chemokine (C-C motif) ligand 8" "Chemokine ligands|Endogenous ligands" "483|542" 1996-11-14 2002-08-23 2016-03-01 2016-10-05 6355 ENSG00000108700 OTTHUMG00000132883 uc002hib.4 X99886 NM_005623 CCDS11280 P80075 9119400 CCL8 602283 +HGNC:10610 CCL11 C-C motif chemokine ligand 11 protein-coding gene gene with protein product Approved 17q12 17q12 "eotaxin|MGC22554" eotaxin-1 SCYA11 "small inducible cytokine subfamily A (Cys-Cys), member 11 (eotaxin)|chemokine (C-C motif) ligand 11" "Chemokine ligands|Endogenous ligands" "483|542" 1996-04-24 2002-08-23 2016-03-01 2016-10-05 6356 ENSG00000172156 OTTHUMG00000132884 uc002hia.2 AB063614 NM_002986 CCDS11279 P51671 9169149 MGI:103576 RGD:3644 CCL11 601156 +HGNC:10611 CCL13 C-C motif chemokine ligand 13 protein-coding gene gene with protein product Approved 17q12 17q12 "MCP-4|NCC-1|SCYL1|CKb10|MGC17134" SCYA13 "small inducible cytokine subfamily A (Cys-Cys), member 13|chemokine (C-C motif) ligand 13" "Chemokine ligands|Endogenous ligands" "483|542" 1997-02-11 2002-08-23 2016-03-01 2016-10-05 6357 ENSG00000181374 OTTHUMG00000132890 uc002hic.3 AJ001634 NM_005408 CCDS11281 Q99616 8661057 MGI:98259 RGD:1309255 CCL13 601391 +HGNC:10612 CCL14 C-C motif chemokine ligand 14 protein-coding gene gene with protein product Approved 17q12 17q12 "HCC-1|HCC-3|NCC-2|SCYL2|CKb1|MCIF" SCYA14 "small inducible cytokine subfamily A (Cys-Cys), member 14|chemokine (C-C motif) ligand 14" "Chemokine ligands|Endogenous ligands" "483|542" 1997-02-11 2002-08-23 2016-03-01 2016-03-01 6358 ENSG00000276409 OTTHUMG00000188403 uc010wcr.2 Z49270 NM_032962 "CCDS32624|CCDS45652" Q16627 8661057 CCL14 601392 +HGNC:10613 CCL15 C-C motif chemokine ligand 15 protein-coding gene gene with protein product Approved 17q12 17q12 "HCC-2|NCC-3|SCYL3|MIP-5|Lkn-1|MIP-1d|HMRP-2B" "leukotactin 1|CC chemokine 3|macrophage inflammatory protein 5|chemokine CC-2|MIP-1 delta" SCYA15 "small inducible cytokine subfamily A (Cys-Cys), member 15|chemokine (C-C motif) ligand 15" "Chemokine ligands|Endogenous ligands" "483|542" 1997-02-11 2002-08-23 2016-03-01 2016-03-01 6359 ENSG00000275718 OTTHUMG00000188406 uc032gbw.1 AF031587 NM_004167 CCDS11304 Q16663 8661057 RGD:1310563 CCL15 601393 +HGNC:44436 CCL15-CCL14 CCL15-CCL14 readthrough (NMD candidate) other readthrough Approved 17q12 17q12 2012-10-08 2013-05-09 2015-01-29 348249 ENSG00000275688 OTTHUMG00000188405 uc060eez.1 NR_027921 +HGNC:10614 CCL16 C-C motif chemokine ligand 16 protein-coding gene gene with protein product Approved 17q12 17q12 "NCC-4|SCYL4|LEC|HCC-4|LMC|LCC-1|CKb12|Mtn-1" SCYA16 "small inducible cytokine subfamily A (Cys-Cys), member 16|chemokine (C-C motif) ligand 16" "Chemokine ligands|Endogenous ligands" "483|542" 1997-02-11 2002-08-23 2016-03-01 2016-03-01 6360 ENSG00000275152 OTTHUMG00000188402 uc032gbo.3 AB007454 NM_004590 CCDS11303 O15467 8661057 CCL16 601394 +HGNC:10615 CCL17 C-C motif chemokine ligand 17 protein-coding gene gene with protein product Approved 16q21 16q21 "TARC|ABCD-2" SCYA17 "small inducible cytokine subfamily A (Cys-Cys), member 17|chemokine (C-C motif) ligand 17" "Chemokine ligands|Endogenous ligands" "483|542" 1996-10-26 2002-08-23 2016-03-01 2016-10-05 6361 ENSG00000102970 OTTHUMG00000133468 uc002elj.1 D43767 NM_002987 CCDS10780 Q92583 "8702936|9070951" MGI:1329039 RGD:619924 CCL17 601520 +HGNC:10616 CCL18 C-C motif chemokine ligand 18 protein-coding gene gene with protein product Approved 17q12 17q12 "DC-CK1|PARC|AMAC-1|DCCK1|MIP-4|CKb7" pulmonary and activation-regulated SCYA18 "small inducible cytokine subfamily A (Cys-Cys), member 18, pulmonary and activation-regulated|chemokine (C-C motif) ligand 18 (pulmonary and activation-regulated)|chemokine (C-C motif) ligand 18" Chemokine ligands 483 1997-01-08 2002-08-23 2016-03-01 2016-03-01 6362 ENSG00000275385 OTTHUMG00000188410 uc002hku.4 Y13710 NM_002988 CCDS11306 P55774 "9233607|10049593" CCL18 603757 +HGNC:10617 CCL19 C-C motif chemokine ligand 19 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "ELC|MIP-3b|exodus-3|CKb11" "CC chemokine ligand 19|macrophage inflammatory protein 3-beta|beta chemokine exodus-3|CK beta-11|EBI1-ligand chemokine" SCYA19 "small inducible cytokine subfamily A (Cys-Cys), member 19|chemokine (C-C motif) ligand 19" "Chemokine ligands|Endogenous ligands" "483|542" 1997-02-19 2002-08-23 2016-03-01 2016-10-05 6363 ENSG00000172724 OTTHUMG00000019833 uc003zvn.4 AB000887 NM_006274 CCDS6570 Q99731 9153236 MGI:1346316 RGD:1310336 CCL19 602227 +HGNC:10619 CCL20 C-C motif chemokine ligand 20 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 "LARC|MIP-3a|exodus-1|ST38|CKb4" SCYA20 "small inducible cytokine subfamily A (Cys-Cys), member 20|chemokine (C-C motif) ligand 20" "Chemokine ligands|Endogenous ligands" "483|542" 1997-02-10 2002-08-23 2016-03-01 2016-03-01 6364 ENSG00000115009 OTTHUMG00000133189 uc002vpm.2 D86955 NM_004591 "CCDS2469|CCDS46536" P78556 "9038201|11352563" MGI:1329031 RGD:3646 CCL20 601960 +HGNC:10620 CCL21 C-C motif chemokine ligand 21 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "SLC|exodus-2|TCA4|CKb9|6Ckine|ECL" "beta chemokine exodus-2|secondary lymphoid tissue chemokine|Efficient Chemoattractant for Lymphocytes" SCYA21 "small inducible cytokine subfamily A (Cys-Cys), member 21|chemokine (C-C motif) ligand 21" "Chemokine ligands|Endogenous ligands" "483|542" 1997-04-10 2002-08-23 2016-03-01 2016-10-05 6366 ENSG00000137077 OTTHUMG00000019838 uc003zvo.5 AB002409 NM_002989 CCDS6571 O00585 9235955 "MGI:1349183|MGI:1349182|MGI:3711256|MGI:3710514|MGI:5434896" RGD:1311996 CCL21 602737 +HGNC:10621 CCL22 C-C motif chemokine ligand 22 protein-coding gene gene with protein product Approved 16q21 16q21 "MDC|STCP-1|ABCD-1|DC/B-CK|A-152E5.1|MGC34554" SCYA22 "small inducible cytokine subfamily A (Cys-Cys), member 22|chemokine (C-C motif) ligand 22" "Chemokine ligands|Endogenous ligands" "483|542" 1997-08-22 2002-08-23 2016-03-01 2016-10-05 6367 ENSG00000102962 OTTHUMG00000133454 uc002elh.4 U83171 NM_002990 CCDS10778 O00626 "9151897|9691168" MGI:1306779 RGD:619933 CCL22 602957 +HGNC:10622 CCL23 C-C motif chemokine ligand 23 protein-coding gene gene with protein product Approved 17q12 17q12 "Ckb-8|MPIF-1|MIP-3|CKb8" SCYA23 "small inducible cytokine subfamily A (Cys-Cys), member 23|chemokine (C-C motif) ligand 23" "Chemokine ligands|Endogenous ligands" "483|542" 1997-11-14 2002-08-23 2016-03-01 2016-03-01 6368 ENSG00000274736 OTTHUMG00000188409 uc002hks.3 U58913 "NM_005064|NM_145898" "CCDS11305|CCDS59282" P55773 "9104803|10409433" RGD:1303200 CCL23 602494 +HGNC:10623 CCL24 C-C motif chemokine ligand 24 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "Ckb-6|MPIF-2|eotaxin-2|MPIF2" "CK-beta-6|myeloid progenitor inhibitory factor 2|eotaxin-2" SCYA24 "small inducible cytokine subfamily A (Cys-Cys), member 24|chemokine (C-C motif) ligand 24" "Chemokine ligands|Endogenous ligands" "483|542" 1997-11-14 2002-08-23 2016-03-01 2016-03-01 6369 ENSG00000106178 OTTHUMG00000156635 uc064emu.1 U85768 NM_002991 CCDS34670 O00175 "9104803|9598329" MGI:1928953 RGD:1310245 CCL24 602495 +HGNC:10624 CCL25 C-C motif chemokine ligand 25 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "TECK|Ckb15" "Ck beta-15|thymus expressed chemokine|TECKvar" SCYA25 "small inducible cytokine subfamily A (Cys-Cys), member 25|chemokine (C-C motif) ligand 25" "Chemokine ligands|Endogenous ligands" "483|542" 1997-11-14 2002-08-23 2016-03-01 2016-03-01 6370 ENSG00000131142 OTTHUMG00000141287 uc060ssu.1 U86358 NM_005624 "CCDS12194|CCDS56080" O15444 "9285413|9722960" MGI:1099448 RGD:1305530 CCL25 602565 +HGNC:10625 CCL26 C-C motif chemokine ligand 26 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "MIP-4alpha|eotaxin-3|IMAC|MIP-4a|TSC-1" "macrophage inflammatory protein 4-alpha|small inducible cytokine A26|CC chemokine IMAC|chemokine N1|thymic stroma chemokine-1|eotaxin-3" SCYA26 "small inducible cytokine subfamily A (Cys-Cys), member 26|chemokine (C-C motif) ligand 26" "Chemokine ligands|Endogenous ligands" "483|542" 1999-06-09 2002-08-23 2016-03-01 2016-10-05 10344 ENSG00000006606 OTTHUMG00000130403 uc003udt.2 AF124601 NM_006072 CCDS5578 Q9Y258 10373330 MGI:3589281 RGD:1587817 CCL26 604697 +HGNC:10626 CCL27 C-C motif chemokine ligand 27 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "ALP|ILC|CTACK|skinkine|ESkine|PESKY|CTAK" "CC chemokine ILC|IL-11 Ralpha-locus chemokine|cutaneous T-cell attracting chemokine" SCYA27 "small inducible cytokine subfamily A (Cys-Cys), member 27|chemokine (C-C motif) ligand 27" "Chemokine ligands|Endogenous ligands" "483|542" 1999-07-30 2002-08-23 2016-03-01 2016-10-05 10850 ENSG00000213927 OTTHUMG00000019834 uc003zvm.1 AJ243542 NM_006664 CCDS6569 Q9Y4X3 "10556532|10588729" "MGI:1343459|MGI:1891389|MGI:3713752" RGD:1304660 CCL27 604833 +HGNC:17700 CCL28 C-C motif chemokine ligand 28 protein-coding gene gene with protein product Approved 5p12 05p12 "SCYA28|MEC|CCK1" "CC chemokine CCL28|mucosae-associated epithelial chemokine|small inducible cytokine subfamily A (Cys-Cys), member 28|small inducible cytokine A28" chemokine (C-C motif) ligand 28 "Chemokine ligands|Endogenous ligands" "483|542" 2002-08-22 2016-03-01 2016-03-01 56477 ENSG00000151882 OTTHUMG00000094811 uc003jnu.4 AF110384 NM_148672 "CCDS3944|CCDS78006" Q9NRJ3 "10781587|11295038" MGI:1861731 RGD:619937 CCL28 605240 +HGNC:21708 CCM2 CCM2 scaffolding protein protein-coding gene gene with protein product Approved 7p13 07p13 "MGC4607|OSM" "malcavernin|osmosensing scaffold for MEKK3" C7orf22 "chromosome 7 open reading frame 22|cerebral cavernous malformation 2" 2003-07-14 2004-02-18 2016-02-03 2016-10-12 83605 ENSG00000136280 OTTHUMG00000129246 uc003tmo.4 BC004903 NM_031443 "CCDS5500|CCDS34630|CCDS55108|CCDS55109" Q9BSQ5 9811928 MGI:2384924 RGD:1308067 LRG_664|http://www.lrg-sequence.org/LRG/LRG_664 CCM2 607929 119213 +HGNC:16153 CCM2L CCM2 like scaffolding protein protein-coding gene gene with protein product Approved 20q11.21 20q11.21 dJ310O13.5 C20orf160 "chromosome 20 open reading frame 160|cerebral cavernous malformation 2-like" 2001-07-17 2012-10-30 2016-02-03 2016-02-03 140706 ENSG00000101331 OTTHUMG00000032197 uc002wxf.3 AL031658 NM_080625 CCDS13195 Q9NUG4 22898778 MGI:2385159 RGD:1305202 +HGNC:1577 CCNA1 cyclin A1 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 CT146 Cyclins 473 1999-01-06 2016-10-05 8900 ENSG00000133101 OTTHUMG00000016733 uc010teo.3 U66838 NM_003914 "CCDS9357|CCDS45031|CCDS45030" P78396 9041194 MGI:108042 RGD:1310639 CCNA1 604036 +HGNC:1578 CCNA2 cyclin A2 protein-coding gene gene with protein product Approved 4q27 04q27 "CCNA|CCN1" Cyclins 473 1990-04-09 2015-08-28 890 ENSG00000145386 OTTHUMG00000133072 uc062zje.1 NM_001237 CCDS3723 P20248 1675006 MGI:108069 RGD:621059 CCNA2 123835 +HGNC:1579 CCNB1 cyclin B1 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 G2/mitotic-specific cyclin B1 CCNB Cyclins 473 1991-12-10 2016-10-05 891 ENSG00000134057 OTTHUMG00000097817 uc003jvm.4 U22364 NM_031966 CCDS3997 P14635 1386342 MGI:88302 RGD:2291 CCNB1 123836 +HGNC:19437 CCNB1IP1 cyclin B1 interacting protein 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 HEI10 human enhancer of invasion 10 C14orf18 "chromosome 14 open reading frame 18|cyclin B1 interacting protein 1, E3 ubiquitin protein ligase" 2003-10-02 2004-01-14 2016-03-18 2016-03-18 57820 ENSG00000100814 OTTHUMG00000029509 uc021rnp.2 AF216381 "NM_021178|NM_182849|NM_182851|NM_182852" CCDS9547 Q9NPC3 "12612082|21779533" MGI:2685134 RGD:1561930 CCNB1IP1 608249 +HGNC:37693 CCNB1IP1P1 cyclin B1 interacting protein 1 pseudogene 1 pseudogene pseudogene Approved 1p34.1 01p34.1 2010-01-14 2014-11-19 728887 ENSG00000229815 OTTHUMG00000008582 NG_015864 PGOHUM00000244697 +HGNC:37694 CCNB1IP1P2 cyclin B1 interacting protein 1 pseudogene 2 pseudogene pseudogene Approved 20q13.12 20q13.12 2010-01-14 2014-11-19 100505892 ENSG00000230860 OTTHUMG00000032597 NG_029632 PGOHUM00000247547 +HGNC:37695 CCNB1IP1P3 cyclin B1 interacting protein 1 pseudogene 3 pseudogene pseudogene Approved Xq21.33 Xq21.33 2010-01-14 2014-11-18 100128456 ENSG00000231001 OTTHUMG00000021978 NG_016614 PGOHUM00000241452 +HGNC:1580 CCNB2 cyclin B2 protein-coding gene gene with protein product Approved 15q22.2 15q22.2 HsT17299 Cyclins 473 1999-02-05 2016-10-05 9133 ENSG00000157456 OTTHUMG00000132715 uc002afz.4 AF002822 NM_004701 CCDS10170 O95067 MGI:88311 RGD:1308176 CCNB2 602755 +HGNC:50850 CCNB2P1 cyclin B2 pseudogene 1 pseudogene pseudogene Approved 7p21.3 07p21.3 CCNB2 pseudogene 1 2014-07-03 2015-04-07 2015-04-07 100132073 ENSG00000214998 OTTHUMG00000152021 NG_022528 +HGNC:18709 CCNB3 cyclin B3 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 Cyclins 473 2002-05-30 2016-10-05 85417 ENSG00000147082 OTTHUMG00000021519 uc004dox.5 AJ314764 XM_017029913 "CCDS14331|CCDS14332" Q8WWL7 "11846420|12185076" MGI:2183443 RGD:1564367 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CCNB3 CCNB3 300456 +HGNC:50851 CCNB3P1 cyclin B3 pseudogene 1 pseudogene pseudogene Approved 5p14.1 05p14.1 CCNB3 pseudogene 1 2014-07-03 2015-04-07 2015-04-07 100131678 ENSG00000249616 OTTHUMG00000161967 NG_021843 PGOHUM00000235169 +HGNC:1581 CCNC cyclin C protein-coding gene gene with protein product Approved 6q16.2 06q16.2 CycC "Cyclins|Mediator complex" "473|1061" 1991-12-10 2016-10-05 892 ENSG00000112237 OTTHUMG00000015268 uc003pqe.4 NM_005190 "CCDS34502|CCDS47461" P24863 1833066 MGI:1858199 RGD:70905 CCNC 123838 +HGNC:1582 CCND1 cyclin D1 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 U21B31 "parathyroid adenomatosis 1|B-cell CLL/lymphoma 1|G1/S-specific cyclin D1" "BCL1|D11S287E|PRAD1" cyclin D1 (PRAD1: parathyroid adenomatosis 1) Cyclins 473 1991-06-06 2005-09-12 2016-10-12 595 ENSG00000110092 OTTHUMG00000167877 uc001opa.4 Z23022 NM_053056 CCDS8191 P24385 "1826542|1833066" MGI:88313 RGD:68384 LRG_990|http://www.lrg-sequence.org/LRG/LRG_990 CCND1 168461 119217 +HGNC:1583 CCND2 cyclin D2 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 G1/S-specific cyclin D2 Cyclins 473 1991-12-10 2016-10-05 894 ENSG00000118971 OTTHUMG00000168123 uc001qmo.4 AF518005 NM_001759 CCDS8524 P30279 1386335 MGI:88314 RGD:621083 CCND2 123833 401370 +HGNC:49398 CCND2-AS1 CCND2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p13.32 12p13.32 2013-10-28 2013-10-28 103752584 ENSG00000256164 OTTHUMG00000168157 BG413373 NR_125790 +HGNC:49399 CCND2-AS2 CCND2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 12p13.32 12p13.32 2013-10-28 2013-10-28 106144606 ENSG00000255920 OTTHUMG00000168320 DA223008 +HGNC:1584 CCND2P1 cyclin D2 pseudogene 1 pseudogene pseudogene Approved 11q12.3 11q12.3 CCND2P cyclin D2 pseudogene 1991-12-10 2013-10-28 2013-10-28 2013-10-28 895 ENSG00000256847 OTTHUMG00000167849 M91003 NG_001092 "1386335|1386336" PGOHUM00000242760 +HGNC:1585 CCND3 cyclin D3 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 Cyclins 473 1991-12-10 2016-10-12 896 ENSG00000112576 OTTHUMG00000014690 uc003orn.4 NM_001760 "CCDS4863|CCDS47425|CCDS47426|CCDS47427|CCDS75452" P30281 1386335 MGI:88315 RGD:2293 LRG_998|http://www.lrg-sequence.org/LRG/LRG_998 CCND3 123834 +HGNC:1586 CCND3P1 cyclin D3 pseudogene 1 pseudogene pseudogene Approved 10p11.23 10p11.23 CCND3P cyclin D3 pseudogene 1991-12-10 2014-07-03 2014-07-03 2014-07-03 897 ENSG00000224473 OTTHUMG00000017892 M90815 NG_001093 "1386335|1386336" PGOHUM00000238391 +HGNC:50852 CCND3P2 cyclin D3 pseudogene 2 pseudogene pseudogene Approved 18q23 18q23 2014-07-03 2014-07-03 106480307 ENSG00000265836 OTTHUMG00000179328 NG_044317 PGOHUM00000235102 +HGNC:1587 CCNDBP1 cyclin D1 binding protein 1 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 "DIP1|GCIP|HHM" "D-type cyclin-interacting protein 1|MAID protein|grap2 and cyclin D interacting protein" cyclin D-type binding-protein 1 1998-10-02 2016-04-26 2016-10-05 23582 ENSG00000166946 OTTHUMG00000130703 uc001zqv.4 AF082569 NM_012142 CCDS10092 O95273 10801854 MGI:109595 RGD:1304669 CCNDBP1 607089 +HGNC:1589 CCNE1 cyclin E1 protein-coding gene gene with protein product Approved 19q12 19q12 "cyclin Es|cyclin Et" CCNE Cyclins 473 1991-12-10 2014-11-19 898 ENSG00000105173 OTTHUMG00000177626 uc002nsn.4 M73812 NM_001238 CCDS12419 P24864 1833066 MGI:88316 RGD:2294 CCNE1 123837 +HGNC:1590 CCNE2 cyclin E2 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 CYCE2 Cyclins 473 1999-02-05 2005-10-18 9134 ENSG00000175305 OTTHUMG00000164696 uc064osf.1 AF091433 "NM_057749|NM_004702" CCDS6264 O96020 "9840927|9840943" MGI:1329034 RGD:1307783 CCNE2 603775 +HGNC:1591 CCNF cyclin F protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FBX1|FBXO1" "Cyclins|F-boxes other" "473|560" 1994-05-18 2015-08-24 899 ENSG00000162063 OTTHUMG00000128858 uc002cqd.2 Z36714 NM_001761 CCDS10467 P41002 7896286 MGI:102551 RGD:67401 CCNF 600227 +HGNC:1592 CCNG1 cyclin G1 protein-coding gene gene with protein product Approved 5q34 05q34 CCNG Cyclins 473 1996-05-07 2016-10-05 900 ENSG00000113328 OTTHUMG00000130380 uc063jig.1 D78341 NM_004060 CCDS4360 P51959 "8954786|8806701" MGI:102890 RGD:2295 CCNG1 601578 +HGNC:39177 CCNG1P1 cyclin G1 pseudogene 1 pseudogene pseudogene Approved 6q23.2 06q23.2 2010-11-15 2010-11-15 100130820 ENSG00000218991 OTTHUMG00000015591 NG_022372 PGOHUM00000243779 +HGNC:1593 CCNG2 cyclin G2 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 Cyclins 473 1997-08-22 2016-10-05 901 ENSG00000138764 OTTHUMG00000130100 uc003hkq.5 BC032518 NM_004354 CCDS3581 Q16589 8806701 MGI:1095734 RGD:1305002 CCNG2 603203 +HGNC:50853 CCNG2P1 cyclin G2 pseudogene 1 pseudogene pseudogene Approved 12q21.1 12q21.1 2014-07-03 2014-07-03 100128681 ENSG00000258112 OTTHUMG00000169731 NG_021693 PGOHUM00000239520 +HGNC:1594 CCNH cyclin H protein-coding gene gene with protein product Approved 5q14.3 05q14.3 "p34|p37|CycH" "CDK-activating kinase complex subunit|cyclin-dependent kinase-activating kinase complex subunit|MO15-associated protein|CAK complex subunit" Cyclins 473 1994-12-16 2016-10-05 902 ENSG00000134480 OTTHUMG00000119077 uc003kjb.4 U12685 NM_001239 CCDS4064 P51946 9465303 MGI:1913921 RGD:69419 CCNH 601953 +HGNC:50854 CCNHP1 cyclin H pseudogene 1 pseudogene pseudogene Approved 4q34.3 04q34.3 2014-07-03 2014-07-03 100128118 ENSG00000251433 OTTHUMG00000160684 NG_022041 PGOHUM00000245780 +HGNC:1595 CCNI cyclin I protein-coding gene gene with protein product Approved 4q21.1 04q21.1 CCNI1 Cyclins 473 2000-06-29 2014-11-19 10983 ENSG00000118816 OTTHUMG00000130106 uc003hkm.5 D50310 NM_006835 CCDS3580 Q14094 7493655 MGI:1341077 RGD:1309209 CCNI +HGNC:33869 CCNI2 cyclin I family member 2 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 FLJ16793 cyclin I family, member 2 Cyclins 473 2008-02-21 2015-11-18 2015-11-18 645121 ENSG00000205089 OTTHUMG00000059737 uc003kxq.3 BC132837 NM_001039780 "CCDS34236|CCDS75297" Q6ZMN8 23707792 CCNI2 +HGNC:23434 CCNJ cyclin J protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "FLJ10895|bA690P14.1" Cyclins 473 2004-05-27 2016-10-05 54619 ENSG00000107443 OTTHUMG00000018823 uc010qoq.3 AK001757 NM_019084 "CCDS7445|CCDS44462|CCDS44463" Q5T5M9 12477932 MGI:2443297 RGD:1306399 CCNJ +HGNC:25876 CCNJL cyclin J like protein-coding gene gene with protein product Approved 5q33.3 05q33.3 FLJ14166 cyclin J-like Cyclins 473 2006-04-07 2016-01-06 2016-01-06 79616 ENSG00000135083 OTTHUMG00000130325 uc003lyb.2 BC013353 NM_024565 "CCDS4350|CCDS78082" Q8IV13 12477932 MGI:2685723 RGD:1561384 CCNJL +HGNC:22512 CCNJP1 cyclin J pseudogene 1 pseudogene pseudogene Approved 7p11.2 07p11.2 CCNJP cyclin J pseudogene 2004-06-02 2010-03-17 2010-03-17 2014-11-19 100128459 ENSG00000227491 OTTHUMG00000156229 NG_017085 PGOHUM00000232713 +HGNC:37997 CCNJP2 cyclin J pseudogene 2 pseudogene pseudogene Approved 1p22.1 01p22.1 2010-03-17 2014-11-19 100418724 ENSG00000223896 OTTHUMG00000010898 NG_022793 PGOHUM00000244798 +HGNC:1596 CCNK cyclin K protein-coding gene gene with protein product Approved 14q32.2 14q32.2 CPR4 "Cyclins|P-TEFb complex" "473|1281" 1998-12-22 2014-07-03 8812 ENSG00000090061 OTTHUMG00000171495 uc001ygi.5 AF060515 XM_005268154 CCDS45160 O75909 "9632813|10574912" MGI:1276106 RGD:1595690 CCNK 603544 +HGNC:20569 CCNL1 cyclin L1 protein-coding gene gene with protein product Approved 3q25.31 03q25.31 ania-6a Cyclins 473 2003-03-07 2015-08-24 57018 ENSG00000163660 OTTHUMG00000158713 uc003fbf.4 AF180920 NM_020307 "CCDS3178|CCDS77847" Q9UK58 11980906 MGI:1922664 RGD:6501887 CCNL1 613384 +HGNC:20570 CCNL2 cyclin L2 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "ania-6b|PCEE|SB138|HLA-ISO|CCNS" cyclin S CCNM cyclin M Cyclins 473 2003-03-07 2015-08-24 81669 ENSG00000221978 OTTHUMG00000002917 uc001afi.3 AF251294 NM_030937 "CCDS30557|CCDS30558" Q96S94 14725631 MGI:1927119 RGD:1309149 CCNL2 613482 +HGNC:50855 CCNL2P1 cyclin L2 pseudogene 1 pseudogene pseudogene Approved 4p13 04p13 2014-07-03 2014-07-03 100418743 ENSG00000248283 OTTHUMG00000162545 NG_025094 PGOHUM00000263127 +HGNC:18576 CCNO cyclin O protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "UDG2|FLJ22422|UNG2" CCNU cyclin U Cyclins 473 2002-04-26 2007-07-26 2007-07-26 2014-11-19 10309 ENSG00000152669 OTTHUMG00000162598 uc003jpw.4 M87499 NM_021147 CCDS34157 P22674 MGI:2145534 RGD:1565217 CCNO 607752 403591 +HGNC:1599 CCNT1 cyclin T1 protein-coding gene gene with protein product Approved 12q13.11-q13.12 12q13.11-q13.12 "CCNT|CYCT1" HIVE1 human immunodeficiency virus type 1 (HIV-1) expression (elevated) 1 "Cyclins|P-TEFb complex" "473|1281" 1998-04-29 2016-10-11 904 ENSG00000129315 OTTHUMG00000170393 uc001rsd.5 AF048730 NM_001240 "CCDS8766|CCDS61109" O60563 "9491887|9499409" MGI:1328363 RGD:1311151 CCNT1 143055 +HGNC:1600 CCNT2 cyclin T2 protein-coding gene gene with protein product Approved 2q21.3 02q21.3 "Cyclins|P-TEFb complex" "473|1281" 1998-04-29 2014-11-18 905 ENSG00000082258 OTTHUMG00000131712 uc002tuc.3 AF048731 NM_058241 "CCDS2174|CCDS2175" O60583 "9499409|10465067" MGI:1920199 RGD:1309205 CCNT2 603862 +HGNC:40130 CCNT2-AS1 CCNT2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q21.3 02q21.3 2013-10-15 2014-11-19 100129961 ENSG00000224043 OTTHUMG00000154855 NR_036549 +HGNC:39178 CCNT2P1 cyclin T2 pseudogene 1 pseudogene pseudogene Approved 1p13.3 01p13.3 2010-11-15 2010-11-15 100418763 ENSG00000225672 OTTHUMG00000034495 NG_026970 PGOHUM00000244141 +HGNC:23354 CCNY cyclin Y protein-coding gene gene with protein product Approved 10p11.21 10p11.21 "CFP1|CBCP1" C10orf9 chromosome 10 open reading frame 9 Cyclins 473 2003-11-12 2007-02-09 2007-02-09 2016-10-05 219771 ENSG00000108100 OTTHUMG00000017955 uc001iyw.6 "AF413522|AY504868" NM_181698 "CCDS7189|CCDS7190|CCDS60513" Q8ND76 20441050 MGI:1915224 RGD:1565969 CCNY 612786 +HGNC:26868 CCNYL1 cyclin Y like 1 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 FLJ40432 cyclin Y-like 1 Cyclins 473 2007-02-09 2015-11-12 2015-11-12 151195 ENSG00000163249 OTTHUMG00000132946 uc002vci.4 AK095479 NM_152523 "CCDS2377|CCDS46503|CCDS82564" Q8N7R7 MGI:2138614 RGD:1310683 CCNYL1 +HGNC:23495 CCNYL2 cyclin Y-like 2 (pseudogene) pseudogene pseudogene Approved 10q11.21 10q11.21 "bA178A10.2|CCNYL2P" C10orf21 "chromosome 10 open reading frame 21|cyclin Y-like 2" Cyclins 473 2004-05-27 2007-02-09 2016-01-06 2016-01-06 414194 ENSG00000182632 OTTHUMG00000018009 BC039000 XM_936368 Q5T2Q4 CCNYL2 +HGNC:33206 CCNYL3 cyclin Y-like 3 other unknown Approved 16p11.2 16p11.2 Cyclins 473 2007-02-09 2015-01-29 642326 ENSG00000216671 P0C7X3 CCNYL3 +HGNC:24342 CCP110 centriolar coiled-coil protein 110 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "KIAA0419|CP110" centriolar coiled coil protein 110kDa 2011-05-26 2016-06-01 2016-06-01 9738 ENSG00000103540 OTTHUMG00000131459 uc002dgk.5 AB007879 NM_014711 "CCDS10579|CCDS55992" O43303 "9455477|12361598|16760425" MGI:2141942 RGD:1310509 CCP110 609544 +HGNC:24227 CCPG1 cell cycle progression 1 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "KIAA1254|CPR8" 2004-07-02 2016-10-05 9236 ENSG00000260916 OTTHUMG00000172678 uc002acv.3 AF212228 NM_004748 "CCDS42039|CCDS55966|CCDS55967" Q9ULG6 "9383053|10574462" MGI:1196419 RGD:1311261 CCPG1 611326 +HGNC:1602 CCR1 C-C motif chemokine receptor 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CKR-1|MIP1aR|CD191" "SCYAR1|CMKBR1" chemokine (C-C motif) receptor 1 "CD molecules|C-C motif chemokine receptors" "471|1091" 1993-10-14 2016-03-14 2016-10-05 1230 ENSG00000163823 OTTHUMG00000133451 uc003cph.2 NM_001295 CCDS2737 P32246 7679328 MGI:104618 RGD:708446 CCR1 601159 449063 objectId:58 CD191 +HGNC:1603 CCR2 C-C motif chemokine receptor 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CC-CKR-2|CKR2|MCP-1-R|CD192|FLJ78302" CMKBR2 chemokine (C-C motif) receptor 2 "CD molecules|C-C motif chemokine receptors" "471|1091" 1995-05-30 2016-03-14 2016-10-05 729230 ENSG00000121807 OTTHUMG00000156466 uc003cpn.5 NM_000647 "CCDS43078|CCDS46813" P41597 8146186 MGI:106185 RGD:620876 CCR2 601267 objectId:59 CD192 +HGNC:1604 CCR3 C-C motif chemokine receptor 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CC-CKR-3|CKR3|CD193" CMKBR3 chemokine (C-C motif) receptor 3 "CD molecules|C-C motif chemokine receptors" "471|1091" 1995-05-30 2016-03-14 2016-10-05 1232 ENSG00000183625 OTTHUMG00000133484 uc003cpg.3 AF247361 XM_017005685 "CCDS2738|CCDS54574" P51677 MGI:104616 RGD:620593 CCR3 601268 objectId:60 CD193 +HGNC:1605 CCR4 C-C motif chemokine receptor 4 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 "CC-CKR-4|CMKBR4|CKR4|k5-5|ChemR13|CD194" chemokine (C-C motif) receptor 4 "CD molecules|C-C motif chemokine receptors" "471|1091" 1996-05-15 2016-03-14 2016-10-05 1233 ENSG00000183813 OTTHUMG00000130752 uc003cfg.2 X85740 XM_017005687 CCDS2656 P51679 "7642634|8884276" MGI:107824 RGD:620594 CCR4 604836 objectId:61 CD194 +HGNC:1606 CCR5 C-C motif chemokine receptor 5 (gene/pseudogene) protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CKR-5|CC-CKR-5|CKR5|CD195|IDDM22" CMKBR5 "chemokine (C-C motif) receptor 5|chemokine (C-C motif) receptor 5 (gene/pseudogene)" "CD molecules|C-C motif chemokine receptors" "471|1091" 1996-05-15 2016-03-14 2016-10-05 1234 ENSG00000160791 OTTHUMG00000133481 uc062izs.1 NM_000579 CCDS2739 P51681 8639485 MGI:107182 RGD:620596 CCR5 601373 324270 objectId:62 CD195 +HGNC:1607 CCR6 C-C motif chemokine receptor 6 protein-coding gene gene with protein product Approved 6q27 06q27 "CKR-L3|GPR-CY4|CMKBR6|GPR29|DRY-6|DCR2|BN-1|CD196" STRL22 chemokine (C-C motif) receptor 6 "CD molecules|C-C motif chemokine receptors" "471|1091" 1997-04-21 2016-03-14 2016-03-14 1235 ENSG00000112486 OTTHUMG00000016015 uc010kkm.3 U68030 NM_031409 CCDS5298 P51684 8886020 MGI:1333797 RGD:1308562 CCR6 601835 377602 objectId:63 CD196 +HGNC:1608 CCR7 C-C motif chemokine receptor 7 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "BLR2|CDw197|CD197" "CMKBR7|EBI1" chemokine (C-C motif) receptor 7 "CD molecules|C-C motif chemokine receptors" "471|1091" 1994-05-17 2016-03-14 2016-10-05 1236 ENSG00000126353 OTTHUMG00000133375 uc002huw.4 NM_001838 "CCDS11369|CCDS77026" P32248 8383238 MGI:103011 RGD:735151 CCR7 600242 objectId:64 CD197 +HGNC:1609 CCR8 C-C motif chemokine receptor 8 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "CY6|TER1|CKR-L1|GPR-CY6|CDw198" "CMKBRL2|CMKBR8" chemokine (C-C motif) receptor 8 "CD molecules|C-C motif chemokine receptors" "471|1091" 1997-04-21 2016-03-14 2016-10-05 1237 ENSG00000179934 OTTHUMG00000131290 uc010hhr.3 D49919 NM_005201 CCDS2684 P51685 "8816377|8886020" MGI:1201402 RGD:1304893 CCR8 601834 objectId:65 CDw198 +HGNC:1610 CCR9 C-C motif chemokine receptor 9 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "GPR-9-6|CDw199" GPR28 chemokine (C-C motif) receptor 9 "CD molecules|C-C motif chemokine receptors" "471|1091" 1999-09-17 2016-03-14 2016-03-14 10803 ENSG00000173585 OTTHUMG00000133450 uc003coz.3 AJ132337 XM_011533312 "CCDS2732|CCDS2733" P51686 10229797 MGI:1341902 RGD:628750 CCR9 604738 objectId:66 CDw199 +HGNC:4474 CCR10 C-C motif chemokine receptor 10 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 GPR2 "G protein-coupled receptor 2|chemokine (C-C motif) receptor 10" C-C motif chemokine receptors 1091 1994-07-25 2004-11-12 2016-03-14 2016-10-05 2826 ENSG00000184451 OTTHUMG00000132301 uc002iax.5 AF215981 NM_016602 CCDS11435 P46092 7851889 MGI:1096320 RGD:1310716 CCR10 600240 objectId:67 +HGNC:39812 CCR12P C-C motif chemokine receptor 12, pseudogene pseudogene pseudogene Approved 13q32.3 13q32.3 GPR183P1 "G protein-coupled receptor 183 pseudogene 1|chemokine (C-C motif) receptor 12, pseudogene" 2011-03-29 2011-06-09 2016-03-14 2016-03-14 100133168 ENSG00000238241 OTTHUMG00000017269 NG_030243 PGOHUM00000248479 +HGNC:21142 CCRL1P1 C-C motif chemokine receptor like 1 pseudogene 1 pseudogene pseudogene Approved 6q24.1 06q24.1 dJ509I19.4 CCRL1P chemokine (C-C motif) receptor-like 1 pseudogene 2003-11-26 2010-03-17 2016-03-14 2016-10-05 285737 ENSG00000225415 OTTHUMG00000015678 XM_208346 +HGNC:1612 CCRL2 C-C motif chemokine receptor like 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "HCR|CRAM-B|CKRX|CRAM-A|ACKR5" atypical chemokine receptor 5 chemokine (C-C motif) receptor-like 2 Atypical chemokine receptors 1090 1999-09-17 2013-07-18 2016-03-14 2016-10-05 9034 ENSG00000121797 OTTHUMG00000156318 uc003cpp.5 AF014958 XM_017007436 "CCDS43079|CCDS46814" O00421 9473515 MGI:1920904 RGD:1311811 CCRL2 608379 objectId:78 +HGNC:1613 CCS copper chaperone for superoxide dismutase protein-coding gene gene with protein product Approved 11q13.2 11q13.2 1999-07-23 2014-11-19 9973 ENSG00000173992 OTTHUMG00000167238 uc001oir.4 AF002210 NM_005125 CCDS8146 O14618 9295278 MGI:1333783 RGD:620403 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ CCS 603864 +HGNC:29578 CCSAP centriole, cilia and spindle associated protein protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "FLJ41471|CSAP" centriole and spindle-associated protein C1orf96 "chromosome 1 open reading frame 96|centriole, cilia and spindle-associated protein" 2005-05-31 2012-06-19 2016-01-19 2016-01-19 126731 ENSG00000154429 OTTHUMG00000037663 uc001htl.4 BC071609 NM_145257 CCDS1577 Q6IQ19 22493317 MGI:1920670 RGD:1563235 CCSAP 616762 +HGNC:29349 CCSER1 coiled-coil serine rich protein 1 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 KIAA1680 FAM190A "family with sequence similarity 190, member A|coiled-coil serine-rich protein 1" 2009-07-09 2012-12-03 2015-11-05 2015-11-05 401145 ENSG00000184305 OTTHUMG00000160950 uc003hsv.5 NM_001145065 "CCDS47099|CCDS47100" Q9C0I3 11214970 MGI:3045354 RGD:1565731 +HGNC:29197 CCSER2 coiled-coil serine rich protein 2 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "KIAA1128|FAM190B" "KIAA1128|family with sequence similarity 190, member B|coiled-coil serine-rich protein 2" 2004-05-27 2012-12-03 2015-11-05 2015-11-05 54462 ENSG00000107771 OTTHUMG00000018641 uc001kdh.3 NM_018999 "CCDS31235|CCDS60582|CCDS60583|CCDS73159" Q9H7U1 10574461 MGI:101859 RGD:1304626 CCSER2 +HGNC:1614 CCT cataract, congenital, total phenotype phenotype only Approved X X 2001-06-22 2012-10-02 907 +HGNC:1615 CCT2 chaperonin containing TCP1 subunit 2 protein-coding gene gene with protein product Approved 12q15 12q15 Cctb chaperonin containing TCP1, subunit 2 (beta) Chaperonins 587 1999-02-26 2016-01-06 2016-01-06 10576 ENSG00000166226 OTTHUMG00000169383 uc001svb.2 AF026293 NM_006431 "CCDS8991|CCDS55843" P78371 9819444 MGI:107186 RGD:1359143 CCT2 605139 +HGNC:1616 CCT3 chaperonin containing TCP1 subunit 3 protein-coding gene gene with protein product Approved 1q22 01q22 Cctg TRIC5 chaperonin containing TCP1, subunit 3 (gamma) Chaperonins 587 1999-02-26 2016-01-06 2016-10-05 7203 ENSG00000163468 OTTHUMG00000024061 uc001fol.3 BC008019 NM_005998 "CCDS1140|CCDS30888" P49368 8110840 MGI:104708 RGD:735038 CCT3 600114 +HGNC:35129 CCT3P1 chaperonin containing TCP1 subunit 3 pseudogene 1 pseudogene pseudogene Approved 8p22 08p22 chaperonin containing TCP1, subunit 3 (gamma) pseudogene 1 2008-09-22 2016-01-06 2016-01-06 646440 NG_022409 PGOHUM00000249580 +HGNC:1617 CCT4 chaperonin containing TCP1 subunit 4 protein-coding gene gene with protein product Approved 2p15 02p15 Cctd chaperonin containing TCP1, subunit 4 (delta) Chaperonins 587 1999-02-26 2016-01-06 2016-01-06 10575 ENSG00000115484 OTTHUMG00000152166 uc002sbo.5 NM_001256721 "CCDS33206|CCDS58711" P50991 9819444 MGI:104689 RGD:727937 CCT4 605142 +HGNC:35151 CCT4P1 chaperonin containing TCP1 subunit 4 pseudogene 1 pseudogene pseudogene Approved 7q34 07q34 chaperonin containing TCP1, subunit 4 (delta) pseudogene 1 2008-09-22 2016-01-06 2016-01-06 650172 ENSG00000242703 OTTHUMG00000157458 NG_016595 PGOHUM00000233016 +HGNC:35141 CCT4P2 chaperonin containing TCP1 subunit 4 pseudogene 2 pseudogene pseudogene Approved Xq11.2 Xq11.2 chaperonin containing TCP1, subunit 4 (delta) pseudogene 2 2008-09-22 2016-01-06 2016-10-05 100131638 ENSG00000225569 OTTHUMG00000021713 NG_022664 +HGNC:1618 CCT5 chaperonin containing TCP1 subunit 5 protein-coding gene gene with protein product Approved 5p15.2 05p15.2 KIAA0098 chaperonin containing TCP1, subunit 5 (epsilon) Chaperonins 587 1999-09-29 2016-01-06 2016-10-12 22948 ENSG00000150753 OTTHUMG00000131042 uc003jeq.4 D43950 NM_012073 "CCDS3877|CCDS77996|CCDS82988|CCDS82989|CCDS82990" P48643 MGI:107185 RGD:735161 LRG_361|http://www.lrg-sequence.org/LRG/LRG_361 CCT5 610150 119222 +HGNC:35135 CCT5P1 chaperonin containing TCP1 subunit 5 pseudogene 1 pseudogene pseudogene Approved 5q22.3 05q22.3 chaperonin containing TCP1, subunit 5 (epsilon) pseudogene 1 2008-09-22 2016-01-06 2016-01-06 402226 ENSG00000250444 OTTHUMG00000162916 NG_016575 +HGNC:35139 CCT5P2 chaperonin containing TCP1 subunit 5 pseudogene 2 pseudogene pseudogene Approved 13q31.1 13q31.1 chaperonin containing TCP1, subunit 5 (epsilon) pseudogene 2 2008-09-22 2016-01-06 2016-01-06 390415 ENSG00000230584 OTTHUMG00000017126 NG_016574 +HGNC:1620 CCT6A chaperonin containing TCP1 subunit 6A protein-coding gene gene with protein product Approved 7p11.2 07p11.2 "TTCP20|TCPZ|Cctz|HTR3|TCP20" CCT6 chaperonin containing TCP1, subunit 6A (zeta 1) Chaperonins 587 1999-02-26 2016-01-06 2016-01-06 908 ENSG00000146731 OTTHUMG00000022842 uc003trl.2 M94083 NM_001762 "CCDS5523|CCDS34640" P40227 "1352881|8034610" MGI:107943 RGD:1304763 CCT6A 104613 +HGNC:1621 CCT6B chaperonin containing TCP1 subunit 6B protein-coding gene gene with protein product Approved 17q12 17q12 "Cctz2|TSA303" chaperonin containing TCP1, subunit 6B (zeta 2) Chaperonins 587 1999-02-26 2016-01-06 2016-01-06 10693 ENSG00000132141 OTTHUMG00000179770 uc002hig.4 D78333 NM_006584 "CCDS32617|CCDS54105|CCDS54106" Q92526 "8812458|9013858" MGI:1329013 RGD:1359453 CCT6B 610730 +HGNC:33094 CCT6P1 chaperonin containing TCP1 subunit 6 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 CCT6AP1 "chaperonin containing TCP1, subunit 6A (zeta 1) pseudogene 1|chaperonin containing TCP1, subunit 6 (zeta) pseudogene 1" 2006-08-07 2008-09-22 2016-01-06 2016-01-06 643253 ENSG00000228409 OTTHUMG00000156733 "BC052238|BC073761" NR_003110 PGOHUM00000233383 +HGNC:35150 CCT6P2 chaperonin containing TCP1 subunit 6 pseudogene 2 pseudogene pseudogene Approved 5p15.2 05p15.2 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 2 2008-09-22 2016-01-06 2016-01-06 391739 ENSG00000250526 OTTHUMG00000161827 NG_016581 PGOHUM00000235126 +HGNC:35137 CCT6P3 chaperonin containing TCP1 subunit 6 pseudogene 3 pseudogene pseudogene Approved 7q11.21 07q11.21 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 3 2008-09-22 2016-01-06 2016-01-06 643180 ENSG00000234585 OTTHUMG00000156630 NR_033416 PGOHUM00000233372 +HGNC:35148 CCT6P4 chaperonin containing TCP1 subunit 6 pseudogene 4 pseudogene pseudogene Approved 3q28 03q28 chaperonin containing TCP1, subunit 6 (zeta) pseudogene 4 2008-09-22 2016-01-06 2016-01-06 100130481 ENSG00000232610 OTTHUMG00000156191 NG_016479 PGOHUM00000238300 +HGNC:38608 CCT6P5 chaperonin containing TCP1 subunit 6 pseudogene 5 pseudogene pseudogene Approved 11q22.3 11q22.3 CCT6-2P chaperonin containing TCP1, subunit 6 (zeta) pseudogene 5 2010-09-29 2016-01-06 2016-01-06 100463286 NG_023057 PGOHUM00000242475 +HGNC:1622 CCT7 chaperonin containing TCP1 subunit 7 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 "Ccth|Nip7-1" chaperonin containing TCP1, subunit 7 (eta) Chaperonins 587 1999-02-26 2016-01-06 2016-01-06 10574 ENSG00000135624 OTTHUMG00000152765 uc002siz.4 AF026292 XM_011532478 "CCDS42696|CCDS46336|CCDS54366|CCDS54367" Q99832 9819444 MGI:107184 RGD:1306422 CCT7 605140 +HGNC:35149 CCT7P1 chaperonin containing TCP1 subunit 7 pseudogene 1 pseudogene pseudogene Approved 6q25.1 06q25.1 chaperonin containing TCP1, subunit 7 (eta) pseudogene 1 2008-09-22 2016-01-06 2016-01-06 442267 ENSG00000217733 OTTHUMG00000015799 NG_013108 PGOHUM00000243814 +HGNC:35134 CCT7P2 chaperonin containing TCP1 subunit 7 pseudogene 2 pseudogene pseudogene Approved 5q14.3 05q14.3 chaperonin containing TCP1, subunit 7 (eta) pseudogene 2 2008-09-22 2016-01-06 2016-01-06 100288772 ENSG00000249958 OTTHUMG00000162628 NG_008698 PGOHUM00000235311 +HGNC:1623 CCT8 chaperonin containing TCP1 subunit 8 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "Cctq|PRED71" C21orf112 "chromosome 21 open reading frame 112|chaperonin containing TCP1, subunit 8 (theta)" Chaperonins 587 1999-02-26 2016-01-06 2016-01-06 10694 ENSG00000156261 OTTHUMG00000044595 uc002ynb.5 Z37163 NM_006585 "CCDS33528|CCDS68180|CCDS68181" P50990 7890169 MGI:107183 RGD:1305452 CCT8 +HGNC:32153 CCT8L1P chaperonin containing TCP1 subunit 8 like 1, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 CCT8L1 "chaperonin containing TCP1, subunit 8 (theta)-like 1|chaperonin containing TCP1, subunit 8 (theta)-like 1, pseudogene" 2007-07-31 2011-09-01 2016-01-06 2016-01-06 155100 ENSG00000020219 OTTHUMG00000157297 NG_012242 A6NM43 MGI:2685289 RGD:1561536 +HGNC:15553 CCT8L2 chaperonin containing TCP1 subunit 8 like 2 protein-coding gene gene with protein product Approved 22q11.1 22q11.1 CESK1 chaperonin containing TCP1, subunit 8 (theta)-like 2 2007-07-31 2016-01-06 2016-01-06 150160 ENSG00000198445 OTTHUMG00000141302 uc002zlp.2 AP003553 NM_014406 CCDS13738 Q96SF2 MGI:2685289 RGD:7640698 CCT8L2 +HGNC:35144 CCT8P1 chaperonin containing TCP1 subunit 8 pseudogene 1 pseudogene pseudogene Approved 1q21.1 01q21.1 chaperonin containing TCP1, subunit 8 (theta) pseudogene 1 2008-09-22 2016-01-06 2016-01-06 644131 ENSG00000226015 OTTHUMG00000041050 NG_016732 +HGNC:1624 CCV cataract, congenital, Volkmann type phenotype phenotype only Approved 1pter-p36.13 01pter-p36.13 CTRCT8 1999-06-10 2014-02-07 7792 7607651 115665 +HGNC:21691 CCZ1 CCZ1 homolog, vacuolar protein trafficking and biogenesis associated protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "CGI-43|CCZ1A" C7orf28A "chromosome 7 open reading frame 28A|CCZ1 vacuolar protein trafficking and biogenesis associated homolog (S. cerevisiae)" 2003-07-14 2010-06-29 2015-07-02 2015-09-01 51622 ENSG00000122674 OTTHUMG00000155502 uc003spf.4 AF151801 NM_015622 CCDS34597 P86791 "10810093|20305638" MGI:2141070 CCZ1 +HGNC:21717 CCZ1B CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "DKFZP586I1023|H_NH0577018.2|MGC19819" similar to CGI-43 protein C7orf28B "chromosome 7 open reading frame 28B|CCZ1 vacuolar protein trafficking and biogenesis associated homolog B (S. cerevisiae)|CCZ1 homolog, vacuolar protein trafficking and biogenesis associated B" 2003-07-14 2011-11-24 2015-07-23 2016-10-05 221960 ENSG00000146574 OTTHUMG00000152441 uc003sqx.3 BC010130 NM_198097 CCDS5354 P86790 12477932 MGI:2141070 RGD:1306410 +HGNC:1634 CD1A CD1a molecule protein-coding gene gene with protein product Approved 1q23.1 01q23.1 CD1 "CD1A antigen, a polypeptide|CD1a antigen" "CD molecules|C1-set domain containing" "471|591" 1988-05-11 2006-03-28 2014-11-19 909 ENSG00000158477 OTTHUMG00000017512 uc001frt.4 M28825 NM_001763 CCDS1174 P06126 "2447586|2784820" CD1A 188370 CD1a +HGNC:1635 CD1B CD1b molecule protein-coding gene gene with protein product Approved 1q23.1 01q23.1 CD1 "CD1B antigen, b polypeptide|CD1b antigen" "CD molecules|C1-set domain containing" "471|591" 1988-05-11 2006-03-28 2014-11-19 910 ENSG00000158485 OTTHUMG00000017513 uc001frx.4 M28826 NM_001764 CCDS1176 P29016 2447586 CD1B 188360 CD1b +HGNC:1636 CD1C CD1c molecule protein-coding gene gene with protein product Approved 1q23.1 01q23.1 CD1 "CD1C antigen, c polypeptide|CD1c antigen" "CD molecules|C1-set domain containing" "471|591" 1988-05-11 2006-03-28 2014-11-19 911 ENSG00000158481 OTTHUMG00000017514 uc001fru.4 M28827 NM_001765 CCDS1175 P29017 2447586 CD1C 188340 CD1c +HGNC:1637 CD1D CD1d molecule protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "CD1D antigen, d polypeptide|CD1d antigen" "CD molecules|C1-set domain containing" "471|591" 1990-06-11 2006-03-28 2015-08-27 912 ENSG00000158473 OTTHUMG00000022436 uc001frr.4 BC027926 NM_001766 CCDS1173 P15813 2463622 "MGI:107674|MGI:107675" RGD:2296 CD1D 188410 CD1d +HGNC:1638 CD1E CD1e molecule protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "CD1E antigen, e polypeptide|CD1e antigen" "CD molecules|C1-set domain containing" "471|591" 1990-06-11 2006-03-28 2014-11-19 913 ENSG00000158488 OTTHUMG00000017515 uc001fse.4 AJ289111 NM_030893 "CCDS41417|CCDS41418|CCDS41419|CCDS41420|CCDS41421|CCDS41422|CCDS53387|CCDS53388|CCDS53389|CCDS53390|CCDS53384|CCDS53385|CCDS53386" P15812 10948205 CD1E 188411 CD1e +HGNC:1639 CD2 CD2 molecule protein-coding gene gene with protein product Approved 1p13.1 01p13.1 SRBC CD2 antigen (p50), sheep red blood cell receptor "CD molecules|V-set domain containing|C2-set domain containing" "471|590|592" 1986-01-01 2006-03-28 2016-10-05 914 ENSG00000116824 OTTHUMG00000022750 uc001egu.5 BC033583 NM_001767 CCDS889 P06729 2437578 MGI:88320 RGD:2297 CD2 186990 objectId:2600 CD2 +HGNC:14258 CD2AP CD2 associated protein protein-coding gene gene with protein product Approved 6p12.3 06p12.3 CMS 2000-12-14 2016-07-04 2016-10-05 23607 ENSG00000198087 OTTHUMG00000014799 uc003oyw.4 AF146277 XM_011514449 CCDS34472 Q9Y5K6 10339567 MGI:1330281 RGD:727803 CD2AP 604241 236656 +HGNC:1656 CD2BP2 CD2 cytoplasmic tail binding protein 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "LIN1|Snu40|PPP1R59" protein phosphatase 1, regulatory subunit 59 "CD2 antigen (cytoplasmic tail)-binding protein 2|CD2 (cytoplasmic tail) binding protein 2" Protein phosphatase 1 regulatory subunits 694 1999-06-18 2016-06-21 2016-06-21 10421 ENSG00000169217 OTTHUMG00000132397 uc002dxs.3 AF104222 NM_006110 CCDS10675 O95400 9843987 MGI:1917483 RGD:1311741 CD2BP2 604470 +HGNC:1673 CD3D CD3d molecule protein-coding gene gene with protein product Approved 11q23.3 11q23.3 T3D "CD3d antigen, delta polypeptide (TiT3 complex)|CD3d molecule, delta (CD3-TCR complex)" CD molecules 471 1986-01-01 2016-01-06 2016-10-12 915 ENSG00000167286 OTTHUMG00000166970 uc001pss.2 X01451 NM_000732 "CCDS8394|CCDS41724" P04234 MGI:88331 RGD:2304 "CD3Dbase: Mutation registry for Autosomal recessive CD3delta deficiency|http://structure.bmc.lu.se/idbase/CD3Dbase/|LRG_37|http://www.lrg-sequence.org/LRG/LRG_37" CD3D 186790 159197 CD3d +HGNC:1674 CD3E CD3e molecule protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "CD3e antigen, epsilon polypeptide (TiT3 complex)|CD3e molecule, epsilon (CD3-TCR complex)" CD molecules 471 1986-01-01 2016-01-06 2016-10-12 916 ENSG00000198851 OTTHUMG00000166968 uc001psq.5 X03884 NM_000733 CCDS31685 P07766 MGI:88332 RGD:1309222 "CD3Ebase: Mutation registry for autosomal recessive CD3epsilon immunodeficiency|http://structure.bmc.lu.se/idbase/CD3Ebase/index2.html|LRG_38|http://www.lrg-sequence.org/LRG/LRG_38" CD3E 186830 159200 objectId:2742 CD3e +HGNC:24219 CD3EAP CD3e molecule associated protein protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "ASE-1|CAST|PAF49" "CD3 epsilon associated protein|antisense to ERCC 1" "CD3e antigen, epsilon polypeptide associated protein|CD3e molecule, epsilon associated protein" 2005-04-21 2016-01-06 2016-10-05 10849 ENSG00000117877 OTTHUMG00000182120 uc002pbq.1 U86751 NM_012099 "CCDS12661|CCDS74397" O15446 "10373416|9426281|15226435" MGI:1917583 RGD:1591707 CD3EAP 107325 +HGNC:1675 CD3G CD3g molecule protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "CD3g antigen, gamma polypeptide (TiT3 complex)|CD3g molecule, gamma (CD3-TCR complex)" CD molecules 471 1988-05-11 2016-01-06 2016-10-12 917 ENSG00000160654 OTTHUMG00000166971 uc001psu.3 X60491 NM_000073 CCDS8395 P09693 MGI:88333 RGD:1307718 "CD3Gbase: Mutation registry for autosomal recessiveCD3gamma immunodeficiency|http://structure.bmc.lu.se/idbase/CD3Gbase/index2.html|LRG_39|http://www.lrg-sequence.org/LRG/LRG_39" CD3G 186740 201284 CD3g +HGNC:1676 CD3W entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-04 CD3w +HGNC:1678 CD4 CD4 molecule protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CD4 antigen (p55)|T-cell surface glycoprotein CD4" "CD molecules|V-set domain containing|C2-set domain containing" "471|590|592" 1986-01-01 2006-03-28 2014-11-18 920 ENSG00000010610 OTTHUMG00000168514 uc001qqv.3 M35160 NM_000616 CCDS8562 P01730 MGI:88335 RGD:2306 CD4 186940 CD4 +HGNC:1685 CD5 CD5 molecule protein-coding gene gene with protein product Approved 11q12.2 11q12.2 T1 LEU1 CD5 antigen (p56-62) CD molecules 471 1986-01-01 2006-03-28 2016-10-05 921 ENSG00000110448 OTTHUMG00000167825 uc009ynk.4 X04391 NM_014207 CCDS8000 P06127 1711157 MGI:88340 RGD:2309 CD5 153340 CD5 +HGNC:1690 CD5L CD5 molecule like protein-coding gene gene with protein product Approved 1q23.1 01q23.1 Spalpha API6 "apoptosis inhibitor 6|CD5 antigen-like (scavenger receptor cysteine rich family)|CD5 molecule-like" 1998-05-11 2015-11-30 2015-11-30 922 ENSG00000073754 OTTHUMG00000022440 uc001frk.5 U82812 NM_005894 CCDS1171 O43866 9045627 MGI:1334419 RGD:1308526 CD5L 602592 +HGNC:1691 CD6 CD6 molecule protein-coding gene gene with protein product Approved 11q12.2 11q12.2 Tp120 CD6 antigen CD molecules 471 1997-07-04 2006-03-28 2015-09-11 923 ENSG00000013725 OTTHUMG00000167823 uc001nqq.4 NM_006725 "CCDS7999|CCDS58137|CCDS58138" P30203 9013954 MGI:103566 RGD:2312 CD6 186720 CD6 +HGNC:1695 CD7 CD7 molecule protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "GP40|LEU-9|TP41|Tp40" "p41 protein|T-cell antigen CD7|T-cell leukemia antigen" CD7 antigen (p41) "CD molecules|V-set domain containing" "471|590" 1986-01-01 2006-03-28 2016-10-05 924 ENSG00000173762 OTTHUMG00000178662 uc002kel.2 X06180 NM_006137 CCDS11807 P09564 "1695199|3501369" MGI:88344 RGD:1310015 CD7 186820 CD7 +HGNC:1706 CD8A CD8a molecule protein-coding gene gene with protein product Approved 2p11.2 02p11.2 CD8 "CD8 antigen, alpha polypeptide (p32)|T-cell surface glycoprotein CD8 alpha chain" "CD molecules|V-set domain containing" "471|590" 1986-01-01 2006-03-28 2016-10-12 925 ENSG00000153563 OTTHUMG00000130265 uc002srv.4 NM_001768 "CCDS1992|CCDS1993" P01732 1541829 MGI:88346 RGD:2316 "CD8Abase: Mutation registry for CD8 deficiency|http://structure.bmc.lu.se/idbase/CD8Abase/|LRG_44|http://www.lrg-sequence.org/LRG/LRG_44" CD8A 186910 221184 CD8a +HGNC:1707 CD8B CD8b molecule protein-coding gene gene with protein product Approved 2p11.2 02p11.2 CD8B1 CD8 antigen, beta polypeptide 1 (p37) "CD molecules|V-set domain containing" "471|590" 1989-04-13 2006-03-09 2006-03-28 2016-10-05 926 ENSG00000172116 OTTHUMG00000130264 uc002srw.4 NM_172099 "CCDS1994|CCDS1995|CCDS42708|CCDS1997|CCDS54376" P10966 1541829 MGI:88347 RGD:2317 CD8B 186730 CD8b +HGNC:1708 CD8BP CD8b molecule pseudogene pseudogene pseudogene Approved 2q12.2 02q12.2 CD8B2 CD8 antigen, beta polypeptide 2, pseudogene (p37) 1992-07-29 2006-03-09 2006-03-28 2014-11-19 927 ENSG00000254126 OTTHUMG00000153183 XM_166000 A6NJW9 1541829 PGOHUM00000250471 +HGNC:1709 CD9 CD9 molecule protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "BA2|P24|TSPAN29|MRP-1" motility related protein-1 MIC3 CD9 antigen (p24) "CD molecules|Tetraspanins" "471|768" 1986-01-01 2006-03-28 2016-10-05 928 ENSG00000010278 OTTHUMG00000044400 uc058kcc.1 M38690 XM_005253814 "CCDS8540|CCDS81654" P21926 6198179 MGI:88348 RGD:2318 CD9 143030 CD9 +HGNC:1628 CD14 CD14 molecule protein-coding gene gene with protein product Approved 5q31.3 05q31.3 CD14 antigen "CD molecules|Scavenger receptors" "471|1253" 1988-05-31 2006-03-28 2014-11-18 929 ENSG00000170458 OTTHUMG00000129507 uc021yej.1 NM_000591 CCDS4232 P08571 "2472171|2462937" MGI:88318 RGD:620588 CD14 158120 CD14 +HGNC:1633 CD19 CD19 molecule protein-coding gene gene with protein product Approved 16p11.2 16p11.2 CD19 antigen "CD molecules|Immunoglobulin like domain containing|Minor histocompatibility antigens" "471|594|870" 1991-06-04 2006-03-28 2016-10-12 930 ENSG00000177455 OTTHUMG00000097049 uc002drs.4 XM_006721103 "CCDS10644|CCDS53998" P15391 MGI:88319 RGD:1309086 "CD19base: Mutation registry for CD19 deficiency|http://structure.bmc.lu.se/idbase/CD19base/|LRG_35|http://www.lrg-sequence.org/LRG/LRG_35" CD19 107265 119235 objectId:2764 CD19 +HGNC:1643 CD22 CD22 molecule protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "SIGLEC-2|SIGLEC2" sialic acid binding Ig-like lectin 2 CD22 antigen "CD molecules|C2-set domain containing|Sialic acid binding Ig like lectins" "471|592|745" 1991-06-06 2006-03-28 2016-10-05 933 ENSG00000012124 OTTHUMG00000183298 uc010edt.5 X52785 NM_001771 "CCDS12457|CCDS54247|CCDS54248|CCDS54249|CCDS62634" P20273 "8496602|1691828" MGI:88322 RGD:1311610 CD22 107266 objectId:2786 CD22 +HGNC:1645 CD24 CD24 molecule protein-coding gene gene with protein product Approved 6q21 06q21 CD24A CD24 antigen (small cell lung carcinoma cluster 4 antigen) CD molecules 471 1994-09-07 2006-03-28 2015-08-27 100133941 ENSG00000272398 OTTHUMG00000188439 uc032xhc.2 NM_013230 "CCDS75499|CCDS78166" P25063 7959762 MGI:88323 RGD:2298 600074 139155 CD24 +HGNC:1646 CD24P1 CD24 molecule pseudogene 1 pseudogene pseudogene Approved 1p36.21 01p36.21 CD24L1 "CD24 antigen-like 1|CD24 molecule-like 1" 1994-09-07 2012-04-17 2012-04-17 2016-10-05 935 ENSG00000236500 OTTHUMG00000002361 NG_009856 7959762 +HGNC:1647 CD24P2 CD24 molecule pseudogene 2 pseudogene pseudogene Approved 15q21.3 15q21.3 CD24L2 "CD24 antigen-like 2|CD24 molecule-like 2" 1994-09-07 2010-10-11 2010-10-11 2012-04-17 936 ENSG00000261333 OTTHUMG00000176398 NG_009857 7959762 +HGNC:1648 CD24P3 CD24 molecule pseudogene 3 pseudogene pseudogene Approved 20q11.21 20q11.21 CD24L3 "CD24 antigen-like 3|CD24 molecule-like 3" 1994-09-07 2010-10-11 2010-10-11 2012-04-17 937 NG_032176 7959762 +HGNC:1649 CD24P4 CD24 molecule pseudogene 4 pseudogene pseudogene Approved Yq11.222 Yq11.222 CD24L4 "CD24 antigen-like 4|CD24 molecule-like 4|CD24 molecule-like 4 pseudogene" 1994-09-07 2010-10-11 2010-10-11 2014-11-19 938 ENSG00000185275 OTTHUMG00000036500 NG_006012 7959762 +HGNC:11922 CD27 CD27 molecule protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "S152|Tp55" TNFRSF7 tumor necrosis factor receptor superfamily, member 7 "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1992-06-10 2006-10-27 2006-10-27 2016-10-12 939 ENSG00000139193 OTTHUMG00000168316 uc001qod.4 M63928 XM_017020232 CCDS8545 P26842 "2442250|8530100" MGI:88326 RGD:1560499 LRG_357|http://www.lrg-sequence.org/LRG/LRG_357 CD27 186711 356847 objectId:1876 CD27 +HGNC:43896 CD27-AS1 CD27 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 CD27 antisense RNA 1 (non-protein coding) 2012-04-27 2012-08-15 2012-10-12 678655 ENSG00000215039 OTTHUMG00000168315 uc058kep.1 AK056500 NR_015382 +HGNC:1653 CD28 CD28 molecule protein-coding gene gene with protein product Approved 2q33.2 02q33.2 T-cell-specific surface glycoprotein CD28 antigen (Tp44) "CD molecules|V-set domain containing" "471|590" 1988-05-11 2006-03-28 2016-10-05 940 ENSG00000178562 OTTHUMG00000132878 uc002vah.6 J02988 NM_006139 "CCDS2361|CCDS58749" P10747 1355979 MGI:88327 RGD:2299 CD28 186760 448537 objectId:2863 CD28 +HGNC:1659 CD33 CD33 molecule protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "SIGLEC3|SIGLEC-3|p67|FLJ00391" sialic acid binding Ig-like lectin 3 CD33 antigen (gp67) "CD molecules|V-set domain containing|Sialic acid binding Ig like lectins" "471|590|745" 1986-01-01 2006-03-28 2016-10-05 945 ENSG00000105383 OTTHUMG00000182891 uc002pwa.3 M23197 NM_001772 "CCDS33084|CCDS46157|CCDS54299" P20138 "3139766|9465907" MGI:99440 RGD:1596020 CD33 159590 objectId:2601 CD33 +HGNC:1662 CD34 CD34 molecule protein-coding gene gene with protein product Approved 1q32.2 01q32.2 CD34 antigen CD molecules 471 1990-09-10 2006-03-28 2016-10-05 947 ENSG00000174059 OTTHUMG00000036565 uc001hgw.2 M81104 NM_001773 "CCDS31011|CCDS31012" P28906 "1370171|1374051" MGI:88329 RGD:1306863 CD34 142230 CD34 +HGNC:1663 CD36 CD36 molecule protein-coding gene gene with protein product Approved 7q21.11 07q21.11 "SCARB3|GPIV|FAT|GP4|GP3B" "CD36 antigen (collagen type I receptor, thrombospondin receptor)|CD36 molecule (thrombospondin receptor)" "CD molecules|Scavenger receptors" "471|1253" 1993-06-04 2016-01-06 2016-10-05 948 ENSG00000135218 OTTHUMG00000155383 uc003uhc.4 Z32770 NM_001001547 "CCDS34673|CCDS78249|CCDS78250|CCDS78251" P16671 7503937 MGI:107899 RGD:2301 CD36 173510 CD36 +HGNC:1666 CD37 CD37 molecule protein-coding gene gene with protein product Approved 19q13.33 19q13.33 TSPAN26 CD37 antigen "CD molecules|Tetraspanins" "471|768" 1993-06-18 2006-03-28 2016-01-15 951 ENSG00000104894 OTTHUMG00000183183 uc002pnd.4 XM_005259435 "CCDS12760|CCDS46139" P11049 8436422 MGI:88330 RGD:62035 CD37 151523 CD37 +HGNC:1667 CD38 CD38 molecule protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "ADP-ribosyl cyclase 1|NAD(+) nucleosidase" CD38 antigen (p45) CD molecules 471 1986-01-01 2006-03-28 2014-11-18 952 ENSG00000004468 OTTHUMG00000048206 uc003gol.2 D84276 NM_001775 CCDS3417 P28907 "9074508|2319135" MGI:107474 RGD:2303 CD38 107270 objectId:2766 CD38 3.2.2.5 +HGNC:11919 CD40 CD40 molecule protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "p50|Bp50" TNFRSF5 "tumor necrosis factor receptor superfamily, member 5|CD40 molecule, TNF receptor superfamily member 5" "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1993-08-27 2005-01-14 2016-01-13 2016-10-12 958 ENSG00000101017 OTTHUMG00000033053 uc002xrg.2 X60592 NM_001250 "CCDS13393|CCDS13394" P25942 "7687385|2998589" MGI:88336 RGD:619830 "CD40base: Mutation registry for CD40 deficiency (previously known as TNFRSF5base)|http://structure.bmc.lu.se/idbase/CD40base/|LRG_40|http://www.lrg-sequence.org/LRG/LRG_40" CD40 109535 119244 objectId:1874 CD40 +HGNC:11935 CD40LG CD40 ligand protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "CD40L|TRAP|gp39|hCD40L|CD154" "CD40 antigen ligand|tumor necrosis factor (ligand) superfamily member 5|T-B cell-activating molecule|TNF-related activation protein|hyper-IgM syndrome" "HIGM1|IMD3|TNFSF5" tumor necrosis factor (ligand) superfamily, member 5 (hyper-IgM syndrome) "CD molecules|Endogenous ligands|Tumor necrosis factor superfamily" "471|542|781" 1989-06-30 2005-01-14 2008-08-01 2016-10-12 959 ENSG00000102245 OTTHUMG00000022512 uc004faa.4 X67878 NM_000074 CCDS14659 P29965 "1427881|7678782" MGI:88337 RGD:708418 "CD40Lbase: Mutation registry for X-linked Hyper-IgM syndrome|http://structure.bmc.lu.se/idbase/CD40Lbase/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CD40LG|LRG_141|http://www.lrg-sequence.org/LRG/LRG_141" CD40LG 300386 119249 CD154 +HGNC:1681 CD44 CD44 molecule (Indian blood group) protein-coding gene gene with protein product Approved 11p13 11p13 "IN|MC56|Pgp1|CD44R|HCELL|CSPG8" "hematopoietic cell E- and L-selectin ligand|chondroitin sulfate proteoglycan 8" "MIC4|MDU2|MDU3" CD44 antigen (homing function and Indian blood group system) "Blood group antigens|CD molecules|Proteoglycans" "454|471|570" 1989-06-30 2006-03-28 2016-10-12 960 ENSG00000026508 OTTHUMG00000044388 uc001mvu.4 M59040 NM_000610 "CCDS7897|CCDS31455|CCDS31456|CCDS31457|CCDS31458|CCDS55754|CCDS55755" P16070 2454887 MGI:88338 RGD:2307 LRG_815|http://www.lrg-sequence.org/LRG/LRG_815 CD44 107269 CD44R +HGNC:6953 CD46 CD46 molecule protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "TRA2.10|MGC26544|TLX" "MIC10|MCP" "antigen identified by monoclonal antibody TRA-2-10|membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)|CD46 antigen, complement regulatory protein|CD46 molecule, complement regulatory protein" "CD molecules|Complement system|Sushi domain containing" "471|492|1179" 1988-08-31 2006-02-09 2016-01-06 2016-10-12 4179 ENSG00000117335 OTTHUMG00000036397 uc001hgj.4 BC030594 NM_172361 "CCDS1479|CCDS1480|CCDS1481|CCDS1482|CCDS1484|CCDS1485|CCDS31008|CCDS31009" P15529 7929741 MGI:1203290 RGD:3061 LRG_155|http://www.lrg-sequence.org/LRG/LRG_155 CD46 120920 119259 CD46 +HGNC:6959 CD46P1 CD46 molecule pseudogene 1 pseudogene pseudogene Approved 1q32.2 01q32.2 "MCPL|CD46P" "membrane cofactor protein-like (CD46-like, trophoblast-lymphocyte cross-reactive antigen-like)|CD46 molecule, complement regulatory protein pseudogene|CD46 molecule, complement regulatory protein pseudogene 1" 1992-06-05 2010-03-02 2016-01-06 2016-10-05 4182 ENSG00000244703 OTTHUMG00000036355 M73721 NG_008252 1740338 PGOHUM00000245188 +HGNC:1682 CD47 CD47 molecule protein-coding gene gene with protein product Approved 3q13.12 03q13.12 "IAP|OA3" "antigen identified by monoclonal antibody 1D8|antigenic surface determinant protein OA3|integrin associated protein|Rh-related antigen|leukocyte surface antigen CD47|CD47 glycoprotein" MER6 CD47 antigen (Rh-related antigen, integrin-associated signal transducer) "CD molecules|Immunoglobulin like domain containing" "471|594" 1994-12-12 2006-03-28 2016-10-05 961 ENSG00000196776 OTTHUMG00000044216 uc003dwv.2 NM_001777 "CCDS43125|CCDS43126" Q08722 "8294396|2277087" MGI:96617 RGD:2308 CD47 601028 CD47 +HGNC:1683 CD48 CD48 molecule protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "BLAST|mCD48|hCD48|SLAMF2" BCM1 "CD48 antigen (B-cell membrane protein)|CD48 molecule " "CD molecules|V-set domain containing|Immunoglobulin like domain containing" "471|590|594" 1986-01-01 2006-03-31 2016-10-05 962 ENSG00000117091 OTTHUMG00000024009 uc001fwn.4 BC016182 NM_001778 "CCDS1208|CCDS72955" P09326 2828034 MGI:88339 RGD:620620 CD48 109530 CD48 +HGNC:1804 CD52 CD52 molecule protein-coding gene gene with protein product Approved 1p36.11 01p36.11 CDW52 CD52 antigen (CAMPATH-1 antigen) CD molecules 471 1991-12-12 2005-02-07 2006-03-28 2016-10-05 1043 ENSG00000169442 OTTHUMG00000003491 uc001bmc.4 NM_001803 CCDS30647 P31358 1711975 MGI:1346088 RGD:620627 CD52 114280 objectId:2602 CD52 +HGNC:1686 CD53 CD53 molecule protein-coding gene gene with protein product Approved 1p13.3 01p13.3 TSPAN25 MOX44 CD53 antigen "CD molecules|Tetraspanins" "471|768" 1991-07-16 2006-03-28 2016-10-05 963 ENSG00000143119 OTTHUMG00000048020 uc001dzx.4 BC040693 NM_000560 CCDS829 P19397 8319976 MGI:88341 RGD:2310 CD53 151525 CD53 +HGNC:2665 CD55 CD55 molecule (Cromer blood group) protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "CR|TC|CROM" DAF "decay accelerating factor for complement (CD55, Cromer blood group system)|CD55 molecule, decay accelerating factor for complement (Cromer blood group)" "Blood group antigens|CD molecules|Sushi domain containing" "454|471|1179" 2001-06-22 2006-02-23 2016-01-06 2016-10-12 1604 ENSG00000196352 OTTHUMG00000036255 uc001hfq.5 BC001288 NM_000574 "CCDS31006|CCDS44307|CCDS73022" P08174 "MGI:104850|MGI:104849" RGD:620651 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|CD55base: Mutation registry for Decay-accelerating factor (CD55) deficiency (previously known as DAFbase)|http://structure.bmc.lu.se/idbase/CD55base/|LRG_127|http://www.lrg-sequence.org/LRG/LRG_127" CD55 125240 CD55 +HGNC:1688 CD58 CD58 molecule protein-coding gene gene with protein product Approved 1p13.1 01p13.1 LFA3 CD58 antigen, (lymphocyte function-associated antigen 3) CD molecules 471 1989-04-06 2006-03-28 2016-10-05 965 ENSG00000116815 OTTHUMG00000022749 uc001egm.4 BC005930 NM_001779 "CCDS888|CCDS44199" P19256 9510189 CD58 153420 CD58 +HGNC:1689 CD59 CD59 molecule protein-coding gene gene with protein product Approved 11p13 11p13 "16.3A5|EJ16|EJ30|EL32|G344|p18-20" "MIC11|MIN1|MSK21|MIN2|MIN3" "CD59 antigen p18-20 (antigen identified by monoclonal antibodies 16.3A5, EJ16, EJ30, EL32 and G344)|CD59 antigen, complement regulatory protein|CD59 molecule, complement regulatory protein" "CD molecules|Complement system|LY6/PLAUR domain containing" "471|492|1226" 1989-06-30 2016-01-06 2016-10-12 966 ENSG00000085063 OTTHUMG00000166270 uc001muv.5 NM_203329 CCDS7886 P13987 7691713 "MGI:109177|MGI:1888996" RGD:2311 "CD59base: Mutation registry for CD59 deficiency|http://structure.bmc.lu.se/idbase/CD59base/|LRG_41|http://www.lrg-sequence.org/LRG/LRG_41" CD59 107271 221173 CD59 +HGNC:1692 CD63 CD63 molecule protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "ME491|TSPAN30" MLA1 CD63 antigen (melanoma 1 antigen) "CD molecules|Tetraspanins" "471|768" 1988-08-07 2006-03-28 2016-01-15 967 ENSG00000135404 OTTHUMG00000170454 uc031qhx.2 M58485 NM_001780 "CCDS8890|CCDS58242|CCDS58243" P08962 MGI:99529 RGD:62080 CD63 155740 CD63 +HGNC:1693 CD68 CD68 molecule protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "SCARD1|macrosialin|GP110|DKFZp686M18236|LAMP4" "scavenger receptor class D, member 1|CD68 antigen|macrophage antigen CD68" CD68 antigen "CD molecules|Scavenger receptors" "471|1253" 1993-06-11 2006-03-28 2016-10-05 968 ENSG00000129226 OTTHUMG00000108146 uc002ghv.4 S57235 NM_001251 "CCDS11114|CCDS58512" P34810 9790779 MGI:88342 RGD:1305970 CD68 153634 CD68 +HGNC:1694 CD69 CD69 molecule protein-coding gene gene with protein product Approved 12p13.31 12p13.31 CLEC2C CD69 antigen (p60, early T-cell activation antigen) "CD molecules|C-type lectin domain family" "471|494" 1992-08-06 2006-03-28 2016-10-05 969 ENSG00000110848 OTTHUMG00000168481 uc001qwk.3 Z22576 NM_001781 CCDS8604 Q07108 1612643 MGI:88343 RGD:61318 CD69 107273 CD69 +HGNC:11937 CD70 CD70 molecule protein-coding gene gene with protein product Approved 19p13.3 19p13.3 CD27L "CD27LG|TNFSF7" tumor necrosis factor (ligand) superfamily, member 7 "CD molecules|Tumor necrosis factor superfamily" "471|781" 1993-11-08 2006-10-27 2006-10-27 2016-10-05 970 ENSG00000125726 OTTHUMG00000181834 uc002mfi.3 L08096 XM_017027523 "CCDS12170|CCDS82283" P32970 "8387892|8120384" MGI:1195273 RGD:1588573 CD70 602840 CD70 +HGNC:1696 CD72 CD72 molecule protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "LYB2|CD72b" CD72 antigen "CD molecules|C-type lectin domain containing" "471|1298" 1991-10-04 2006-03-28 2016-10-05 971 ENSG00000137101 OTTHUMG00000019870 uc064sxd.1 NM_001782 CCDS6581 P21854 "2044654|1711157" MGI:88345 RGD:1309757 CD72 107272 CD72 +HGNC:1697 CD74 CD74 molecule protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "HLA-DR-gamma|Ia-associated invariant chain|gamma chain of class II antigens|MHC HLA-DR gamma chain" DHLAG "CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)|CD74 molecule, major histocompatibility complex, class II invariant chain" CD molecules 471 1986-01-01 2016-01-06 2016-10-05 972 ENSG00000019582 OTTHUMG00000163559 uc003lse.4 NM_004355 "CCDS34276|CCDS47308|CCDS47309" P04233 "6324166|3001652" MGI:96534 RGD:2313 CD74 142790 I31.002 objectId:2840 CD74 +HGNC:1698 CD79A CD79a molecule protein-coding gene gene with protein product Approved 19q13.2 19q13.2 MB-1 IGA "CD79A antigen (immunoglobulin-associated alpha)|CD79a molecule, immunoglobulin-associated alpha" "CD molecules|V-set domain containing" "471|590" 1992-07-31 2015-11-19 2016-10-12 973 ENSG00000105369 OTTHUMG00000182678 uc002orv.3 M80462 NM_001783 "CCDS12589|CCDS46088" P11912 1538135 MGI:101774 RGD:6484896 "CD79Abase: Mutation registry for Igα deficiency|http://structure.bmc.lu.se/idbase/CD79Abase/|LRG_42|http://www.lrg-sequence.org/LRG/LRG_42" CD79A 112205 221180 CD79a +HGNC:1699 CD79B CD79b molecule protein-coding gene gene with protein product Approved 17q23 17q23 B29 IGB "CD79B antigen (immunoglobulin-associated beta)|CD79b molecule, immunoglobulin-associated beta" "CD molecules|V-set domain containing" "471|590" 1992-08-04 2015-11-19 2016-10-12 974 ENSG00000007312 OTTHUMG00000172294 uc002jdq.2 L27587 NM_001329050 "CCDS11655|CCDS11656|CCDS42372" P40259 9545642 MGI:96431 RGD:620012 "CD79Bbase: Mutation registry for Igβ deficiency|http://structure.bmc.lu.se/idbase/CD79Bbase/|LRG_43|http://www.lrg-sequence.org/LRG/LRG_43" CD79B 147245 236967 objectId:2852 CD79b +HGNC:1700 CD80 CD80 molecule protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "B7.1|B7-1" B-lymphocyte activation antigen B7 "CD28LG|CD28LG1" "CD80 antigen (CD28 antigen ligand 1, B7-1 antigen)|CD80 molecule " "CD molecules|V-set domain containing|C2-set domain containing" "471|590|592" 1993-12-14 2006-03-31 2016-10-05 941 ENSG00000121594 OTTHUMG00000159419 uc003ecq.4 NM_005191 CCDS2989 P33681 1370389 MGI:101775 RGD:2314 CD80 112203 objectId:2744 CD80 +HGNC:1701 CD81 CD81 molecule protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "TAPA-1|TSPAN28" TAPA1 CD81 antigen (target of antiproliferative antibody 1) "CD molecules|Tetraspanins" "471|768" 1992-10-21 2006-03-28 2016-10-12 975 ENSG00000110651 OTTHUMG00000009892 uc001lwf.2 NM_004356 "CCDS7734|CCDS73240" P60033 1650385 MGI:1096398 RGD:2315 LRG_142|http://www.lrg-sequence.org/LRG/LRG_142 CD81 186845 235199 CD81 +HGNC:49384 CD81-AS1 CD81 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 2013-10-18 2013-10-22 101927682 ENSG00000238184 OTTHUMG00000009760 BC042822 NR_108080 +HGNC:6210 CD82 CD82 molecule protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "R2|IA4|TSPAN27" "suppression of tumorigenicity 6|R2 leukocyte antigen" "ST6|KAI1" "kangai 1 (suppression of tumorigenicity 6, prostate; CD82 antigen (R2 leukocyte antigen, antigen detected by monoclonal and antibody IA4))|CD82 antigen" "CD molecules|Tetraspanins" "471|768" 1994-01-10 2005-03-03 2006-03-28 2016-01-15 3732 ENSG00000085117 OTTHUMG00000166472 uc001myc.4 U20770 XM_006718223 "CCDS7909|CCDS31469" P27701 MGI:104651 RGD:69070 CD82 600623 CD82 +HGNC:1703 CD83 CD83 molecule protein-coding gene gene with protein product Approved 6p23 06p23 "HB15|BL11" "CD83 antigen (activated B lymphocytes, immunoglobulin superfamily)|CD83 molecule " "CD molecules|V-set domain containing" "471|590" 1999-03-26 2006-03-31 2014-11-19 9308 ENSG00000112149 OTTHUMG00000014283 uc003nbi.4 Z11697 NM_001251901 "CCDS4532|CCDS75403" Q01151 "1378080|8422464" MGI:1328316 RGD:1309677 CD83 604534 CD83 +HGNC:13946 CD83P1 CD83 molecule pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "HB15p|b34I8.3" CD83P "CD83 antigen (activated B lymphocytes, immunoglobulin superfamily) pseudogene|CD83 molecule pseudogene" 2003-11-26 2010-03-02 2010-03-02 2016-10-05 100128240 ENSG00000219738 OTTHUMG00000014480 NG_022297 PGOHUM00000301280 +HGNC:1704 CD84 CD84 molecule protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "SLAMF5|hCD84|mCD84" "CD84 antigen (leukocyte antigen)|CD84 molecule " "CD molecules|Immunoglobulin like domain containing" "471|594" 1999-01-18 2006-03-31 2016-10-05 8832 ENSG00000066294 OTTHUMG00000022788 uc001fwf.5 AF054816 NM_003874 "CCDS1206|CCDS53395|CCDS53396|CCDS53397|CCDS81388" Q9UIB8 9310491 MGI:1336885 RGD:1564553 CD84 604513 CD84 +HGNC:1705 CD86 CD86 molecule protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "B7.2|B7-2" B-lymphocyte antigen B7-2 CD28LG2 CD86 antigen (CD28 antigen ligand 2, B7-2 antigen) "CD molecules|V-set domain containing|Immunoglobulin like domain containing" "471|590|594" 1994-12-07 2006-03-28 2016-10-05 942 ENSG00000114013 OTTHUMG00000159482 uc003eet.4 NM_006889 "CCDS3009|CCDS43138|CCDS56272|CCDS56273|CCDS74991" P42081 7513726 MGI:101773 RGD:628714 CD86 601020 objectId:2745 CD86 +HGNC:15855 CD93 CD93 molecule protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "C1qRP|C1qR(P)|dJ737E23.1|CDw93|ECSM3" "MXRA4|C1QR1" "matrix-remodelling associated 4|complement component 1, q subcomponent, receptor 1|CD93 antigen" "CD molecules|C-type lectin domain containing" "471|1298" 2001-12-05 2006-02-22 2006-03-28 2015-08-24 22918 ENSG00000125810 OTTHUMG00000032058 uc002wsv.4 U94333 NM_012072 CCDS13149 Q9NPY3 "9047234|10648005" MGI:106664 RGD:621251 CD93 120577 CD93 +HGNC:16892 CD96 CD96 molecule protein-coding gene gene with protein product Approved 3p13-q13.2 03p13-q13.2 TACTILE CD96 antigen "CD molecules|Immunoglobulin like domain containing" "471|594" 2003-01-22 2006-03-28 2014-11-19 10225 ENSG00000153283 OTTHUMG00000159275 uc003dxw.4 M88282 XR_001739977 "CCDS2958|CCDS2959|CCDS82817" P40200 1313846 MGI:1934368 RGD:1565249 CD96 606037 138499 CD96 +HGNC:7082 CD99 CD99 molecule protein-coding gene gene with protein product Approved Xp22.32 and Yp11.3 Xp22.32 and Yp11.3 MIC2 "antigen identified by monoclonal antibodies 12E7, F21 and O13|CD99 antigen" "CD molecules|Pseudoautosomal region 1" "471|715" 2001-06-22 2003-02-14 2006-03-28 2016-10-12 4267 ENSG00000002586 OTTHUMG00000021073 uc004fpz.4 M16279 NM_001122898 "CCDS14119|CCDS48071|CCDS75947|CCDS83452" P14209 RGD:1594332 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CD99|LRG_1023|http://www.lrg-sequence.org/LRG/LRG_1023" CD99 "313470|450000" CD99 +HGNC:18237 CD99L2 CD99 molecule like 2 protein-coding gene gene with protein product Approved Xq28 Xq28 CD99B MIC2L1 "MIC2 like 1|CD99 antigen-like 2|CD99 molecule-like 2" 2002-02-28 2003-02-14 2015-11-30 2015-11-30 83692 ENSG00000102181 OTTHUMG00000024247 uc004fem.4 BC030536 NM_031462 "CCDS14697|CCDS14698|CCDS35427|CCDS55527|CCDS76044" Q8TCZ2 MGI:2177151 RGD:620896 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CD99L2 CD99L2 300846 +HGNC:7083 CD99P1 CD99 molecule pseudogene 1 pseudogene pseudogene Approved Xp22.33 and Yp11.31 Xp22.33 and Yp11.31 "MIC2R|NCRNA00103|CXYorf12|CD99L1" "MIC2-related|CD99 antigen-like 1|CD99 molecule-like 1|non-protein coding RNA 103|chromosome X and Y open reading frame 12|CD99 molecule-like 1, pseudogene" Pseudoautosomal region 1 715 1995-04-26 2010-10-11 2010-10-11 2015-08-20 401577 ENSG00000223773 OTTHUMG00000021071 NR_033380 "7833914|26269497" CD99P1 +HGNC:5949 CD101 CD101 molecule protein-coding gene gene with protein product Approved 1p13.1 01p13.1 V7 IGSF2 immunoglobulin superfamily, member 2 "CD molecules|V-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "471|590|593|594" 1998-12-03 2009-10-27 2009-10-27 2016-10-05 9398 ENSG00000134256 OTTHUMG00000012029 uc010oxc.3 Z33642 NM_004258 CCDS891 Q93033 7722300 MGI:2685862 RGD:1311453 CD101 604516 CD101 +HGNC:21685 CD109 CD109 molecule protein-coding gene gene with protein product Approved 6q13 06q13 "FLJ38569|DKFZp762L1111|CPAMD7" CD109 antigen (Gov platelet alloantigens) "CD molecules|C3 and PZP like, alpha-2-macroglobulin domain containing" "471|1234" 2003-07-04 2006-03-28 2016-10-12 135228 ENSG00000156535 OTTHUMG00000015040 uc003php.4 AF410459 NM_133493 "CCDS4982|CCDS55038|CCDS55039" Q6YHK3 "11861284|11861285" MGI:2445221 RGD:1311287 LRG_1002|http://www.lrg-sequence.org/LRG/LRG_1002 CD109 608859 328918 I39.006 CD109 +HGNC:1630 CD151 CD151 molecule (Raph blood group) protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "SFA-1|PETA-3|TSPAN24|RAPH" "CD151 antigen|CD151 antigen (Raph blood group)" "Blood group antigens|CD molecules|Tetraspanins" "454|471|768" 1997-04-10 2006-03-28 2016-10-12 977 ENSG00000177697 OTTHUMG00000133311 uc001lrz.4 "AL161965|BC013302|D29963" NM_004357 CCDS7719 P48509 9070943 MGI:1096360 RGD:621290 LRG_817|http://www.lrg-sequence.org/LRG/LRG_817 CD151 602243 304247 CD151 +HGNC:17013 CD160 CD160 molecule protein-coding gene gene with protein product Approved 1q21.1 01q21.1 "BY55|NK1|NK28" CD160 antigen "CD molecules|Immunoglobulin like domain containing" "471|594" 2003-10-02 2006-03-28 2016-10-05 11126 ENSG00000117281 OTTHUMG00000013749 uc001eol.3 AF060981 NM_007053 CCDS72861 O95971 "9743336|9973372" MGI:1860383 RGD:1563598 CD160 604463 CD160 +HGNC:1631 CD163 CD163 molecule protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "M130|MM130|SCARI1" CD163 antigen "CD molecules|Scavenger receptors" "471|1253" 2000-01-18 2006-03-28 2016-10-05 9332 ENSG00000177575 OTTHUMG00000168353 uc001qsz.4 Z22968 "NM_004244|NM_203416" "CCDS8578|CCDS53742" Q86VB7 "10403791|8370408" MGI:2135946 RGD:1310382 CD163 605545 CD163 +HGNC:30375 CD163L1 CD163 molecule like 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "M160|CD163B|SCARI2" "CD163 antigen-like 1|CD163 molecule-like 1" Scavenger receptors 1253 2005-12-15 2015-11-30 2016-04-29 283316 ENSG00000177675 OTTHUMG00000168325 uc001qsy.4 AF264014 NM_174941 "CCDS8577|CCDS73434" Q9NR16 "11124526|11086079" CD163L1 606079 +HGNC:1632 CD164 CD164 molecule protein-coding gene gene with protein product Approved 6q21 06q21 "MUC-24|MGC-24|DFNA66" deafness, autosomal dominant 66 "CD164 antigen, sialomucin|CD164 molecule, sialomucin" CD molecules 471 2000-06-08 2016-01-06 2016-01-06 8763 ENSG00000135535 OTTHUMG00000015339 uc003ptd.4 AF106518 NM_006016 "CCDS5073|CCDS47462|CCDS47463|CCDS47464|CCDS47465" Q04900 "9680353|9763543|26197441" MGI:1859568 RGD:70942 CD164 603356 459308 CD164 +HGNC:32043 CD164L2 CD164 molecule like 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 CD164 sialomucin-like 2 2005-07-08 2016-01-06 2016-01-06 388611 ENSG00000174950 OTTHUMG00000003395 uc031tuv.2 AY358761 NM_207397 "CCDS302|CCDS81287" Q6UWJ8 MGI:1916905 RGD:2323068 CD164L2 +HGNC:30072 CD177 CD177 molecule protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "PRV1|HNA2A|NB1" polycythemia rubra vera 1 CD177 antigen "CD molecules|LY6/PLAUR domain containing" "471|1226" 2005-08-12 2006-03-28 2015-08-27 57126 ENSG00000204936 OTTHUMG00000185320 uc032hyu.2 AF146747 NM_020406 CCDS62700 Q8N6Q3 "10753836|5552408" MGI:1916141 RGD:1562941 CD177 162860 CD177 +HGNC:34508 CD177P1 CD177 molecule pseudogene 1 pseudogene pseudogene Approved 19q13.31 19q13.31 CD177P CD177 molecule pseudogene 2008-08-06 2010-03-02 2010-03-02 2016-03-24 653579 ENSG00000204933 OTTHUMG00000185322 NG_005616 PGOHUM00000267724 +HGNC:6726 CD180 CD180 molecule protein-coding gene gene with protein product Approved 5q12.3 05q12.3 "RP105|Ly78" LY64 "lymphocyte antigen 64 (mouse) homolog, radioprotective, 105kD|CD180 antigen" CD molecules 471 1996-05-07 2005-06-07 2006-03-28 2016-10-05 4064 ENSG00000134061 OTTHUMG00000131229 uc003juy.3 D83597 NM_005582 CCDS3992 Q99467 "9763566|8975706" MGI:1194924 RGD:1308170 CD180 602226 CD180 +HGNC:7203 CD200 CD200 molecule protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "MRC|OX-2" "MOX1|MOX2" "antigen identified by monoclonal antibody MRC OX-2|CD200 antigen" "CD molecules|Immunoglobulin like domain containing" "471|594" 2001-06-22 2004-09-01 2006-03-28 2015-08-27 4345 ENSG00000091972 OTTHUMG00000159248 uc003dyx.4 XM_005247481 "CCDS2965|CCDS33818|CCDS82819" P41217 MGI:1196990 RGD:3104 CD200 155970 CD200 +HGNC:24235 CD200R1 CD200 receptor 1 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "OX2R|HCRTR2|CD200R" MOX2R MOX2 receptor C2-set domain containing 592 2004-07-12 2004-09-01 2004-08-31 2016-10-05 131450 ENSG00000163606 OTTHUMG00000159298 uc003dzj.2 AK126349 NM_138806 "CCDS2969|CCDS2970|CCDS46889|CCDS54623" Q8TD46 "10981966|11133863" "MGI:1889024|MGI:3042847|MGI:1921853|MGI:3036289" RGD:61837 CD200R1 607546 +HGNC:24665 CD200R1L CD200 receptor 1 like protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "CD200RLa|CD200R2" CD200 receptor 2 CD200 receptor 1-like C2-set domain containing 592 2008-10-08 2015-11-11 2015-11-11 344807 ENSG00000206531 OTTHUMG00000159283 uc003dzi.1 AY284976 NM_001008784 "CCDS43131|CCDS56267" Q6Q8B3 "MGI:1889024|MGI:3042847|MGI:1921853|MGI:3036289" RGD:1563387 CD200R1L +HGNC:17935 CD207 CD207 molecule protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "Langerin|CLEC4K" "CD207 antigen, langerin|CD207 molecule, langerin" "CD molecules|C-type lectin domain family|Scavenger receptors" "471|494|1253" 2003-10-02 2016-01-06 2016-10-05 50489 ENSG00000116031 OTTHUMG00000153176 uc002shg.4 AJ242859 NM_015717 CCDS74520 Q9UJ71 "10661407|9847074" MGI:2180021 RGD:1565913 CD207 604862 CD207 +HGNC:1641 CD209 CD209 molecule protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "DC-SIGN|CDSIGN|DC-SIGN1|CLEC4L" CD209 antigen "CD molecules|C-type lectin domain family|Scavenger receptors" "471|494|1253" 2000-07-19 2006-03-28 2016-10-05 30835 ENSG00000090659 OTTHUMG00000182530 uc002mht.3 M98457 NM_021155 "CCDS12186|CCDS45949|CCDS45950|CCDS45951|CCDS45952|CCDS59344|CCDS59345" Q9NNX6 1518869 "MGI:1916415|MGI:2157942|MGI:2157945|MGI:2157947|MGI:2157948" CD209 604672 CD209 +HGNC:16961 CD226 CD226 molecule protein-coding gene gene with protein product Approved 18q22.2 18q22.2 "DNAM-1|DNAM1|PTA1|TLiSA1" CD226 antigen "CD molecules|V-set domain containing" "471|590" 2003-10-02 2006-03-28 2016-10-05 10666 ENSG00000150637 OTTHUMG00000132809 uc002lkm.6 U56102 NM_006566 "CCDS11997|CCDS77197" Q15762 8673704 MGI:3039602 RGD:1311513 CD226 605397 CD226 +HGNC:18171 CD244 CD244 molecule protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "2B4|NAIL|NKR2B4|Nmrk|SLAMF4" "natural killer cell receptor 2B4|CD244 natural killer cell receptor 2B4|CD244 molecule, natural killer cell receptor 2B4" "CD molecules|Immunoglobulin like domain containing" "471|594" 2003-10-23 2016-01-06 2016-10-05 51744 ENSG00000122223 OTTHUMG00000028606 uc001fxa.4 AF105261 NM_016382 "CCDS1210|CCDS53398|CCDS53399" Q9BZW8 "3772297|10458320" MGI:109294 RGD:68400 CD244 605554 CD244 +HGNC:1677 CD247 CD247 molecule protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "CD3H|CD3Q" CD3Z "CD3z antigen, zeta polypeptide (TiT3 complex)|CD247 antigen" CD molecules 471 1989-04-06 2006-03-09 2006-03-28 2016-10-12 919 ENSG00000198821 OTTHUMG00000034593 uc001gei.5 BC025703 NM_198053 "CCDS1260|CCDS1261" P20963 2974162 MGI:88334 RGD:2305 "CD247base: Mutation registry for Autosomal recessive CD3Zeta deficiency|http://structure.bmc.lu.se/idbase/CD247base/|LRG_36|http://www.lrg-sequence.org/LRG/LRG_36" CD247 186780 226144 CD247 +HGNC:18219 CD248 CD248 molecule protein-coding gene gene with protein product Approved 11q13.2 11q13.2 TEM1 "endosialin|tumor endothelial marker 1" CD164L1 "CD164 sialomucin-like 1|CD248 antigen, endosialin|CD248 molecule, endosialin" "CD molecules|C-type lectin domain containing" "471|1298" 2003-08-27 2005-02-11 2016-01-06 2016-10-05 57124 ENSG00000174807 OTTHUMG00000167073 uc001ohm.1 AF279142 NM_020404 CCDS8134 Q9HCU0 "10947988|11084048" MGI:1917695 RGD:1310404 CD248 606064 CD248 +HGNC:17635 CD274 CD274 molecule protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "B7-H|B7H1|PD-L1|PDL1|B7-H1" B7 homolog 1 PDCD1LG1 "programmed cell death 1 ligand 1|CD274 antigen" "CD molecules|Endogenous ligands|V-set domain containing|C2-set domain containing" "471|542|590|592" 2003-11-13 2005-02-25 2006-03-28 2014-11-19 29126 ENSG00000120217 OTTHUMG00000019503 uc003zje.4 AF177937 NM_014143 "CCDS6464|CCDS59118" Q9NZQ7 "11015443|10581077" MGI:1926446 RGD:1566211 CD274 605402 objectId:2848 CD274 +HGNC:19137 CD276 CD276 molecule protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "B7-H3|B7H3|B7RP-2" CD276 antigen "CD molecules|V-set domain containing|C2-set domain containing" "471|590|592" 2005-03-04 2006-03-28 2016-10-05 80381 ENSG00000103855 OTTHUMG00000137585 uc002avv.2 AF302102 NM_025240 "CCDS10251|CCDS32288" Q5ZPR3 "11224528|12055244" MGI:2183926 RGD:727815 CD276 605715 CD276 +HGNC:19319 CD300A CD300a molecule protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "Irp60|CMRF35H|CMRF-35-H9|IRC1|IRC2|IGSF12" CD300a antigen "CD molecules|V-set domain containing" "471|590" 2005-02-08 2006-03-28 2016-10-05 11314 ENSG00000167851 OTTHUMG00000067612 uc002jkv.5 BC032352 NM_007261 "CCDS32720|CCDS58590|CCDS82196|CCDS82197" Q9UGN4 "9701027|10746781" MGI:2443411 RGD:1583719 CD300A 606790 CD300a +HGNC:19320 CD300C CD300c molecule protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "CMRF35|LIR|CMRF-35A|CMRF35A|IGSF16" CD300c antigen "CD molecules|V-set domain containing" "471|590" 2005-02-08 2006-03-28 2016-10-05 10871 ENSG00000167850 OTTHUMG00000067608 uc002jky.3 BC022279 NM_006678 CCDS11701 Q08708 "1349532|10746781" "MGI:2153249|MGI:3032626" CD300C 606786 CD300c +HGNC:28874 CD300E CD300e molecule protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "IREM2|CLM2" CD300LE "CD300 antigen like family member E|CD300e antigen" "CD molecules|V-set domain containing" "471|590" 2005-05-17 2006-02-22 2006-03-28 2015-09-11 342510 ENSG00000186407 OTTHUMG00000067605 uc002jlb.3 BX648376 NM_181449 CCDS11702 Q496F6 "15549731|15557162" MGI:2387602 RGD:1585137 CD300E 609801 CD300e +HGNC:30811 CD300LB CD300 molecule like family member b protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "TREM5|CLM7" triggering receptor expressed on myeloid cells 5 "CD300 antigen like family member B|CD300 molecule-like family member b" V-set domain containing 590 2005-05-17 2015-11-30 2016-04-25 124599 ENSG00000178789 OTTHUMG00000067606 uc002jkx.4 AF427618 NM_174892 CCDS11700 A8K4G0 12975309 MGI:2685099 RGD:1583718 CD300LB 610705 +HGNC:16848 CD300LD CD300 molecule like family member d protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "CMRF35A4|CD300D" CD300 molecule-like family member d V-set domain containing 590 2008-02-19 2015-11-30 2015-11-30 100131439 ENSG00000204345 OTTHUMG00000067614 uc002jkz.3 NM_001115152 CCDS42379 Q6UXZ3 22291008 "MGI:2442358|MGI:2687214|MGI:3702658|MGI:3702661" RGD:2319739 CD300LD 616301 +HGNC:29883 CD300LF CD300 molecule like family member f protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "IREM1|NKIR|IGSF13|CD300f|CLM1" "CD300 antigen like family member F|CD300 molecule-like family member f" V-set domain containing 590 2005-05-17 2015-11-30 2016-10-05 146722 ENSG00000186074 OTTHUMG00000067609 uc002jlg.5 BC028199 NM_139018 "CCDS11704|CCDS74148|CCDS74149|CCDS74150|CCDS74151|CCDS74152" Q8TDQ1 12975309 MGI:2442359 RGD:1309733 CD300LF 609807 +HGNC:30455 CD300LG CD300 molecule like family member g protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "Trem4|CLM9" nepmucin "CD300 antigen like family member G|CD300 molecule-like family member g" V-set domain containing 590 2005-05-17 2015-11-30 2015-11-30 146894 ENSG00000161649 OTTHUMG00000181796 uc002iem.4 BC025395 NM_145273 "CCDS11470|CCDS54131|CCDS54132|CCDS54133" Q6UXG3 "16876123|16754720" MGI:1289168 RGD:1584376 CD300LG 610520 +HGNC:30843 CD302 CD302 molecule protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "DCL-1|KIAA0022|BIMLEC|CLEC13A" C-type lectin domain family 13, member A CD302 antigen "CD molecules|C-type lectin domain family" "471|494" 2005-02-11 2006-03-28 2014-11-18 9936 ENSG00000241399 OTTHUMG00000154080 uc002uba.4 AY314007 NM_014880 "CCDS33308|CCDS56139|CCDS74595" Q8IX05 "7584026|7584028" MGI:1913455 RGD:1307606 CD302 612246 CD302 +HGNC:16692 CD320 CD320 molecule protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "8D6|8D6A" 8D6 antigen CD320 antigen CD molecules 471 2005-02-09 2006-03-28 2016-01-15 51293 ENSG00000167775 OTTHUMG00000182457 uc002mjj.3 AF161254 NM_016579 "CCDS12198|CCDS54210" Q9NPF0 10727470 MGI:1860083 RGD:1305860 CD320 606475 280190 CD320 +HGNC:1712 CDA cytidine deaminase protein-coding gene gene with protein product Approved 1p36.12 01p36.12 CDD 1993-06-17 2016-10-05 978 ENSG00000158825 OTTHUMG00000002845 uc001bdk.4 BC054036 NM_001785 CCDS210 P32320 "8422236|9878810" MGI:1919519 RGD:1311101 CDA 123920 3.5.4.5 +HGNC:20299 CDADC1 cytidine and dCMP deaminase domain containing 1 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 NYD-SP15 2003-11-21 2016-10-05 81602 ENSG00000102543 OTTHUMG00000016913 uc001vcu.4 AY027525 NM_030911 CCDS9415 Q9BWV3 MGI:1919141 RGD:1311845 CDADC1 +HGNC:1713 CDAN1 codanin 1 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 "CDA-I|CDAI" congenital dyserythropoietic anemia, type I 1998-04-07 2012-04-25 2014-11-19 146059 ENSG00000140326 OTTHUMG00000175801 uc001zql.4 AF525398 XM_085300 CCDS32209 Q8IWY9 "8634422|12434312" MGI:1916218 RGD:1306771 CDAN1 607465 119266 +HGNC:1715 CDAN3 congenital dyserythropoietic anemia, type III phenotype phenotype only Approved 15q21-q25 15q21-q25 CDAIII 1994-09-29 2006-03-28 981 7711721 105600 +HGNC:1716 CDB2 corneal dystrophy of Bowman layer type II (Thiel-Behnke) phenotype phenotype only Approved 10q23-q24 10q23-q24 CDTB CDB II corneal dystrophy of Bowman's layer type II (Thiel-Behnke) 1997-09-05 2007-10-04 2007-10-04 982 9403072 +HGNC:1743 CDC5L cell division cycle 5 like protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "PCDC5RP|hCDC5|CEF1|CDC5" "CDC5 (cell division cycle 5, S. pombe, homolog)-like|CDC5 cell division cycle 5-like (S. pombe)|cell division cycle 5-like" Myb/SANT domain containing 532 1997-08-28 2015-11-18 2015-11-18 988 ENSG00000096401 OTTHUMG00000014767 uc003oxl.4 D85423 NM_001253 CCDS4912 Q99459 "9598309|9038199" MGI:1918952 RGD:70892 CDC5L 602868 +HGNC:1744 CDC6 cell division cycle 6 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 CDC18L "CDC6 (cell division cycle 6, S. cerevisiae) homolog|CDC6 cell division cycle 6 homolog (S. cerevisiae)|cell division cycle 6 homolog (S. cerevisiae)" 1999-08-06 2013-01-17 2016-10-05 990 ENSG00000094804 OTTHUMG00000133324 uc002huj.2 U77949 NM_001254 CCDS11365 Q99741 "8990175|9566895" MGI:1345150 RGD:1309157 CDC6 602627 260345 +HGNC:1745 CDC7 cell division cycle 7 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "Hsk1|huCdc7|HsCdc7" CDC7L1 "CDC7 (cell division cycle 7, S. cerevisiae, homolog)-like 1|CDC7 cell division cycle 7 (S. cerevisiae)|cell division cycle 7 (S. cerevisiae)|cell division cycle 7 homolog (S. cerevisiae)" 1998-09-01 2003-07-23 2013-01-17 2016-10-05 8317 ENSG00000097046 OTTHUMG00000047810 uc001doe.4 AF015592 NM_003503 CCDS734 O00311 "9405610|9250678" MGI:1309511 RGD:1308351 CDC7 603311 objectId:1960 +HGNC:1718 CDC14A cell division cycle 14A protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "Cdc14A1|Cdc14A2|cdc14" "CDC10 (cell division cycle 10, S. cerevisiae, homolog)|CDC14 cell division cycle 14 homolog A (S. cerevisiae)" CDC14 phosphatases 900 1998-12-18 2013-01-17 2016-10-05 8556 ENSG00000079335 OTTHUMG00000010987 uc001dtf.3 AF000367 NM_033312 "CCDS769|CCDS770|CCDS771|CCDS81353" Q9UNH5 "9367992|10409437" MGI:2442676 RGD:1304649 CDC14A 603504 459321 +HGNC:1719 CDC14B cell division cycle 14B protein-coding gene gene with protein product Approved 9q22.32-q22.33 09q22.32-q22.33 "Cdc14B1|Cdc14B2|CDC14B3|hCDC14B" "CDC14 (cell division cycle 14, S. cerevisiae) homolog B|CDC14 cell division cycle 14 homolog B (S. cerevisiae)" CDC14 phosphatases 900 1998-12-18 2013-01-17 2016-10-11 8555 ENSG00000081377 OTTHUMG00000020300 uc004awj.3 AF023158 NM_033331 "CCDS6721|CCDS6722|CCDS43853" O60729 9367992 MGI:2441808 RGD:1311163 CDC14B 603505 +HGNC:22427 CDC14C cell division cycle 14C, pseuodgene pseudogene pseudogene Approved 7p12.3 07p12.3 "MGC26484|CDC14B2|CDC14Bretro|CDC14CP" "CDC14 cell division cycle 14 homolog C (S. cerevisiae)|cell division cycle 14C" 2005-03-09 2016-07-19 2016-07-19 168448 ENSG00000218305 OTTHUMG00000155844 BC028690 XM_498195 A4D256 "18547142|20720150" PGOHUM00000302621 +HGNC:1720 CDC16 cell division cycle 16 protein-coding gene gene with protein product Approved 13q34 13q34 "APC6|ANAPC6|CUT9" anaphase-promoting complex, subunit 6 "CDC16 (cell division cycle 16, S. cerevisiae, homolog)|CDC16 cell division cycle 16 homolog (S. cerevisiae)|cell division cycle 16 homolog (S. cerevisiae)" "Anaphase promoting complex |Tetratricopeptide repeat domain containing" "402|769" 1999-06-07 2013-01-17 2015-09-11 8881 ENSG00000130177 OTTHUMG00000017402 uc001vuk.1 U18291 NM_003903 "CCDS9542|CCDS81786|CCDS81787" Q13042 7736578 MGI:1917207 RGD:1305076 CDC16 603461 +HGNC:1723 CDC20 cell division cycle 20 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "p55CDC|CDC20A" "CDC20 (cell division cycle 20, S. cerevisiae, homolog)|CDC20 cell division cycle 20 homolog (S. cerevisiae)|cell division cycle 20 homolog (S. cerevisiae)" WD repeat domain containing 362 1998-08-20 2013-01-17 2016-10-05 991 ENSG00000117399 OTTHUMG00000007420 uc001cix.4 U05340 NM_001255 CCDS484 Q12834 "7513050|9353311" MGI:1859866 RGD:620477 CDC20 603618 +HGNC:24222 CDC20B cell division cycle 20B protein-coding gene gene with protein product Approved 5q11.2 05q11.2 FLJ37927 "CDC20 cell division cycle 20 homolog B (S. cerevisiae)|cell division cycle 20 homolog B (S. cerevisiae)" WD repeat domain containing 362 2006-07-07 2013-01-17 2014-11-19 166979 ENSG00000164287 OTTHUMG00000131185 uc003jpn.3 AB086378 NM_152623 "CCDS3966|CCDS47207|CCDS54852" Q86Y33 MGI:3644472 RGD:1584143 CDC20B +HGNC:29487 CDC20P1 cell division cycle 20 pseudogene 1 pseudogene pseudogene Approved 9q21.33 09q21.33 OTTHUMG00000020142 CDC20P "CDC20 cell division cycle 20 homolog pseudogene (S. cerevisiae)|cell division cycle 20 homolog (S. cerevisiae) pseudogene|cell division cycle 20 homolog (S. cerevisiae) pseudogene 1" 2005-05-20 2010-03-02 2013-01-17 2014-11-18 157956 ENSG00000231007 OTTHUMG00000020142 NG_001560 9682218 PGOHUM00000236675 +HGNC:1724 CDC23 cell division cycle 23 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "APC8|ANAPC8|CUT23" anaphase promoting complex subunit 8 "CDC23 (cell division cycle 23, yeast, homolog)|cell division cycle 23 homolog (S. cerevisiae)" "Anaphase promoting complex |Tetratricopeptide repeat domain containing" "402|769" 1998-06-25 2013-01-17 2016-10-05 8697 ENSG00000094880 OTTHUMG00000129198 uc003lcl.3 AF053977 NM_004661 CCDS4200 Q9UJX2 9790767 MGI:1098815 RGD:1304819 CDC23 603462 +HGNC:1725 CDC25A cell division cycle 25A protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "cell division cycle 25A|cell division cycle 25 homolog A (S. cerevisiae)|cell division cycle 25 homolog A (S. pombe)" Class III Cys-based CDC25 phosphatases 713 1992-07-31 2013-01-17 2016-10-05 993 ENSG00000164045 OTTHUMG00000133535 uc003csh.2 M81933 NM_001789 "CCDS2760|CCDS2761" P30304 1836978 MGI:103198 RGD:621498 CDC25A 116947 +HGNC:1726 CDC25B cell division cycle 25B protein-coding gene gene with protein product Approved 20p13 20p13 "cell division cycle 25B|cell division cycle 25 homolog B (S. cerevisiae)|cell division cycle 25 homolog B (S. pombe)" Class III Cys-based CDC25 phosphatases 713 1992-07-31 2013-01-17 2014-11-18 994 ENSG00000101224 OTTHUMG00000031764 uc002wjn.5 NM_021874 "CCDS13065|CCDS13066|CCDS13067|CCDS74700|CCDS74701" P30305 1836978 MGI:99701 RGD:621500 CDC25B 116949 +HGNC:1727 CDC25C cell division cycle 25C protein-coding gene gene with protein product Approved 5q31.2 05q31.2 PPP1R60 protein phosphatase 1, regulatory subunit 60 CDC25 "cell division cycle 25C|cell division cycle 25 homolog C (S. cerevisiae)|cell division cycle 25 homolog C (S. pombe)" "Protein phosphatase 1 regulatory subunits|Class III Cys-based CDC25 phosphatases" "694|713" 1992-02-06 2013-01-17 2016-10-05 995 ENSG00000158402 OTTHUMG00000129203 uc063hkk.1 M34065 XM_005272145 "CCDS4202|CCDS4203" P30307 1703321 MGI:88350 RGD:1311875 CDC25C 157680 +HGNC:17839 CDC26 cell division cycle 26 protein-coding gene gene with protein product Approved 9q32 09q32 "APC12|ANAPC12" "CDC26 subunit of anaphase promoting complex|anaphase promoting complex subunit 12" C9orf17 "chromosome 9 open reading frame 17|cell division cycle 26|cell division cycle 26 homolog (S. cerevisiae)" Anaphase promoting complex 402 2002-01-29 2003-11-26 2013-01-17 2014-11-19 246184 ENSG00000176386 OTTHUMG00000020521 uc004bgw.4 AF503918 NM_139286 CCDS6790 Q8NHZ8 "8895471|10922056" MGI:1913690 RGD:1311342 CDC26 614533 +HGNC:22770 CDC26P1 cell division cycle 26 pseudogene 1 pseudogene pseudogene Approved 7q32.1 07q32.1 TCAG_1970866 CDC26P "cell division cycle 26 pseudogene|cell division cycle 26 homolog (S. cerevisiae) pseudogene|cell division cycle 26 homolog (S. cerevisiae) pseudogene 1" 2003-11-24 2010-03-02 2013-01-17 2013-01-17 729948 NG_011774 +HGNC:1728 CDC27 cell division cycle 27 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "APC3|ANAPC3|NUC2" anaphase promoting complex subunit 3 "D0S1430E|D17S978E" "cell division cycle 27|cell division cycle 27 homolog (S. cerevisiae)" "Anaphase promoting complex |Tetratricopeptide repeat domain containing" "402|769" 1994-02-23 2013-01-17 2014-11-18 996 ENSG00000004897 OTTHUMG00000166429 uc002ild.5 U00001 XM_011525546 "CCDS11509|CCDS45720|CCDS74090" P30260 8234252 MGI:102685 RGD:1304921 CDC27 116946 +HGNC:38091 CDC27P1 cell division cycle 27 pseudogene 1 pseudogene pseudogene Approved 2q21.2 02q21.2 cell division cycle 27 homolog (S. cerevisiae) pseudogene 1 2010-04-14 2013-01-17 2015-05-18 647696 ENSG00000233786 OTTHUMG00000153604 NG_021586 PGOHUM00000298734 +HGNC:38092 CDC27P2 cell division cycle 27 pseudogene 2 pseudogene pseudogene Approved Yp11.2 Yp11.2 cell division cycle 27 homolog (S. cerevisiae) pseudogene 2 2010-04-14 2013-01-17 2015-05-18 100130277 ENSG00000237447 OTTHUMG00000036270 NG_021910 PGOHUM00000305464 +HGNC:51754 CDC27P3 cell division cycle 27 pseudogene 3 pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-19 2016-07-22 102723416 ENSG00000283005 OTTHUMG00000191536 PGOHUM00000297091 +HGNC:51753 CDC27P4 cell division cycle 27 pseudogene 4 pseudogene pseudogene Approved 20q11.21 20q11.21 2015-05-19 2015-05-19 2015-05-19 2015-05-19 102723498 PGOHUM00000297094 +HGNC:51755 CDC27P5 cell division cycle 27 pseudogene 5 pseudogene pseudogene Approved 20q11.21 20q11.21 2015-05-19 2015-05-19 647654 PGOHUM00000296964 +HGNC:51756 CDC27P6 cell division cycle 27 pseudogene 6 pseudogene pseudogene Approved 14p11.2 14p11.2 2015-05-19 2015-05-19 649620 PGOHUM00000292251 +HGNC:51757 CDC27P7 cell division cycle 27 pseudogene 7 pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-19 2015-05-19 102723711 PGOHUM00000297573 +HGNC:51758 CDC27P8 cell division cycle 27 pseudogene 8 pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-19 2015-05-19 100288806 PGOHUM00000297402 +HGNC:51759 CDC27P9 cell division cycle 27 pseudogene 9 pseudogene pseudogene Approved 21p11.2 21p11.2 2015-05-19 2015-05-19 102723570 XR_430342 PGOHUM00000297179 +HGNC:51760 CDC27P10 cell division cycle 27 pseudogene 10 pseudogene pseudogene Approved 21p11.2 21p11.2 2015-05-19 2015-05-19 102723584 XR_430343 PGOHUM00000297182 +HGNC:51761 CDC27P11 cell division cycle 27 pseudogene 11 pseudogene pseudogene Approved 21p11.2 21p11.2 2015-05-19 2015-05-19 102723603 XR_430344 PGOHUM00000297184 +HGNC:1734 CDC34 cell division cycle 34 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "E2-CDC34|UBE2R1|UBC3" ubiquitin conjugating enzyme E2 R1 "cell division cycle 34|cell division cycle 34 homolog (S. cerevisiae)" Ubiquitin conjugating enzymes E2 102 1994-05-12 2013-01-17 2016-03-14 997 ENSG00000099804 OTTHUMG00000180558 uc002lov.5 L22005 NM_004359 CCDS12030 P49427 "8248134|16210246" MGI:102657 RGD:1305411 CDC34 116948 +HGNC:1735 CDC37 cell division cycle 37 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 P50CDC37 "CDC37 cell division cycle 37 homolog|Hsp90 co-chaperone Cdc37|CDC37 (cell division cycle 37, S. cerevisiae, homolog)" "CDC37 (cell division cycle 37, S. cerevisiae, homolog)|CDC37 cell division cycle 37 homolog (S. cerevisiae)|cell division cycle 37 homolog (S. cerevisiae)" 1999-09-07 2013-01-17 2014-11-19 11140 ENSG00000105401 OTTHUMG00000180578 uc002mof.2 U63131 NM_007065 CCDS12237 Q16543 "8703009|8666233" MGI:109531 RGD:71006 CDC37 605065 +HGNC:17179 CDC37L1 cell division cycle 37 like 1 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "HARC|FLJ20639|CDC37B" "CDC37 cell division cycle 37 homolog (S. cerevisiae)-like 1|cell division cycle 37 homolog (S. cerevisiae)-like 1|cell division cycle 37-like 1" 2004-05-27 2016-03-15 2016-03-15 55664 ENSG00000106993 OTTHUMG00000019465 uc003zio.4 AK000497 NM_017913 CCDS6454 Q7L3B6 MGI:1914322 RGD:1309295 CDC37L1 610346 +HGNC:49735 CDC37L1-AS1 CDC37L1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9p24.1 09p24.1 2014-02-13 2014-02-13 101929351 ENSG00000273061 OTTHUMG00000185906 CK820219 NR_121598 +HGNC:34406 CDC37P1 cell division cycle 37 pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 A-761H5.2 cell division cycle 37 homolog (S. cerevisiae) pseudogene 1 2009-01-29 2013-01-17 2014-11-19 390688 ENSG00000259982 OTTHUMG00000175739 NG_009463 15616553 CDC37P1 +HGNC:35453 CDC37P2 cell division cycle 37 pseudogene 2 pseudogene pseudogene Approved 16p12.1 16p12.1 cell division cycle 37 homolog (S. cerevisiae) pseudogene 2 2009-01-29 2013-01-17 2016-10-05 647015 ENSG00000261089 OTTHUMG00000175736 NG_009466 11413142 PGOHUM00000293752 +HGNC:17350 CDC40 cell division cycle 40 protein-coding gene gene with protein product Approved 6q21 06q21 "PRP17|EHB3|PRPF17|FLJ10564" "cell division cycle 40 homolog (yeast)|cell division cycle 40 homolog (S. cerevisiae)" WD repeat domain containing 362 2003-05-16 2013-01-17 2016-10-05 51362 ENSG00000168438 OTTHUMG00000015358 uc003pua.4 AF015044 NM_015891 CCDS5081 O60508 "9769104|9830021" MGI:1918963 RGD:1307063 CDC40 605585 +HGNC:1736 CDC42 cell division cycle 42 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "G25K|CDC42Hs" GTP binding protein, 25kDa "cell division cycle 42 (GTP-binding protein, 25kD)|cell division cycle 42 (GTP binding protein, 25kDa)" Rho family GTPases 390 1991-06-06 2013-01-17 2016-10-05 998 ENSG00000070831 OTTHUMG00000002753 uc057ddl.1 BC018266 NM_001791 "CCDS221|CCDS222" P60953 "2124704|2122236" MGI:106211 RGD:71043 CDC42 116952 +HGNC:41317 CDC42-IT1 CDC42 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p36.12 01p36.12 CDC42 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874292 ENSG00000230068 OTTHUMG00000002890 uc057ddo.1 +HGNC:1737 CDC42BPA CDC42 binding protein kinase alpha protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "MRCKA|PK428|FLJ23347|KIAA0451|MRCK" myotonic dystrophy kinase-related Cdc42-binding kinase CDC42-binding protein kinase alpha (DMPK-like) 1998-11-06 2016-01-05 2016-10-05 8476 ENSG00000143776 OTTHUMG00000037618 uc001hqr.4 U59305 NM_014826 "CCDS1558|CCDS1559" Q5VT25 MGI:2441841 RGD:621406 CDC42BPA 603412 objectId:1507 +HGNC:1738 CDC42BPB CDC42 binding protein kinase beta protein-coding gene gene with protein product Approved 14q32.32 14q32.32 "MRCKB|KIAA1124" CDC42-binding protein kinase beta (DMPK-like) 1998-11-06 2016-01-05 2016-01-05 9578 ENSG00000198752 OTTHUMG00000171898 uc001ymi.2 AF128625 NM_006035 CCDS9978 Q9Y5S2 10198171 MGI:2136459 RGD:621753 CDC42BPB 614062 objectId:1508 +HGNC:29829 CDC42BPG CDC42 binding protein kinase gamma protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "HSMDPKIN|MRCKgamma|DMPK2|kappa-200" CDC42 binding protein kinase gamma (DMPK-like) Pleckstrin homology domain containing 682 2004-11-15 2016-01-05 2016-10-05 55561 ENSG00000171219 OTTHUMG00000045365 uc001obs.5 AY648038 XM_290516 CCDS31601 Q6DT37 "9341881|15194684" MGI:2652845 RGD:1307260 CDC42BPG 613991 objectId:1506 +HGNC:17014 CDC42EP1 CDC42 effector protein 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "MSE55|CEP1|Borg5" "55 kDa bone marrow stromal/endothelial cell protein|serum constituent protein|binder of Rho GTPases 5" CDC42 effector protein (Rho GTPase binding) 1 CDC42 effector proteins 1164 2002-08-27 2016-01-07 2016-01-07 11135 ENSG00000128283 OTTHUMG00000150591 uc003asz.5 M88338 NM_152243 CCDS13949 Q00587 "1629197|10430899" MGI:1929763 RGD:1311131 CDC42EP1 606084 +HGNC:16263 CDC42EP2 CDC42 effector protein 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "CEP2|BORG1" "CRIB-containing BOGR1 protein|binder of Rho GTPases 1" CDC42 effector protein (Rho GTPase binding) 2 CDC42 effector proteins 1164 2002-08-27 2016-01-07 2016-10-05 10435 ENSG00000149798 OTTHUMG00000165958 uc001odl.3 AF098290 NM_006779 CCDS8099 O14613 "10490598|11035016" MGI:1929744 RGD:1310253 CDC42EP2 606132 +HGNC:16943 CDC42EP3 CDC42 effector protein 3 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "CEP3|UB1|BORG2" binder of Rho GTPases 2 CDC42 effector protein (Rho GTPase binding) 3 CDC42 effector proteins 1164 2002-08-27 2016-01-07 2016-10-05 10602 ENSG00000163171 OTTHUMG00000100971 uc031roa.1 AF094521 NM_006449 CCDS1791 Q9UKI2 "9535835|11035016" MGI:2384718 RGD:1305858 CDC42EP3 606133 +HGNC:49673 CDC42EP3P1 CDC42 effector protein 3 pseudogene 1 pseudogene pseudogene Approved 19p12 19p12 CDC42 effector protein (Rho GTPase binding) 3 pseudogene 1 2014-02-04 2016-01-07 2016-01-07 100128845 ENSG00000268992 OTTHUMG00000183271 NG_021762 PGOHUM00000234638 +HGNC:17147 CDC42EP4 CDC42 effector protein 4 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "CEP4|KAIA1777|BORG4|MGC3740|MGC17125" "Cdc42 effector protein 4|binder of Rho GTPases 4" CDC42 effector protein (Rho GTPase binding) 4 CDC42 effector proteins 1164 2002-08-27 2016-01-07 2016-01-15 23580 ENSG00000179604 OTTHUMG00000178419 uc002jjo.4 AB042237 NM_012121 CCDS11695 Q9H3Q1 "11035016|10490598" MGI:1929760 RGD:1311567 CDC42EP4 605468 +HGNC:17408 CDC42EP5 CDC42 effector protein 5 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "CEP5|Borg3" binder of Rho GTPases 3 CDC42 effector protein (Rho GTPase binding) 5 CDC42 effector proteins 1164 2003-12-02 2016-01-07 2016-01-07 148170 ENSG00000167617 OTTHUMG00000065699 uc002qfz.3 BC024327 NM_145057 CCDS12896 Q6NZY7 MGI:1929745 RGD:1308382 CDC42EP5 609171 +HGNC:16339 CDC42P1 cell division cycle 42 pseudogene 1 pseudogene pseudogene Approved 20q11.22 20q11.22 bK3216D2.3 2001-09-17 2011-05-19 170503 ENSG00000234933 OTTHUMG00000032293 AL356299 NG_023206 PGOHUM00000247518 +HGNC:33952 CDC42P2 cell division cycle 42 pseudogene 2 pseudogene pseudogene Approved 7p11.2 07p11.2 2008-01-23 2014-11-19 643336 ENSG00000234844 OTTHUMG00000156120 NG_007652 PGOHUM00000232697 +HGNC:44427 CDC42P3 cell division cycle 42 pseudogene 3 pseudogene pseudogene Approved 8q24.3 08q24.3 2012-10-08 2012-10-08 100128627 ENSG00000253971 OTTHUMG00000164753 NR_102426 PGOHUM00000249812 +HGNC:44428 CDC42P4 cell division cycle 42 pseudogene 4 pseudogene pseudogene Approved 4q25 04q25 2012-10-08 2012-10-08 100131440 ENSG00000249965 OTTHUMG00000161101 NG_022069 PGOHUM00000246022 +HGNC:44429 CDC42P5 cell division cycle 42 pseudogene 5 pseudogene pseudogene Approved 5q35.1 05q35.1 2012-10-08 2012-10-08 100507354 ENSG00000253439 OTTHUMG00000163321 NG_030075 PGOHUM00000235456 +HGNC:44430 CDC42P6 cell division cycle 42 pseudogene 6 pseudogene pseudogene Approved 4p15.2 04p15.2 CDC42P6 2012-10-08 2013-01-17 2013-01-17 643751 ENSG00000237350 OTTHUMG00000160449 NG_008215 +HGNC:17719 CDC42SE1 CDC42 small effector 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "SCIP1|SPEC1" 2004-07-02 2016-10-05 56882 ENSG00000197622 OTTHUMG00000035158 uc001ewp.4 AF187845 NM_020239 CCDS981 Q9NRR8 10816584 MGI:1889510 RGD:1561700 CDC42SE1 +HGNC:18547 CDC42SE2 CDC42 small effector 2 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "FLJ21967|SPEC2" 2004-07-02 2014-11-19 56990 ENSG00000158985 OTTHUMG00000162692 uc003kvj.4 AF189692 NM_020240 CCDS34224 Q9NRR3 10816584 MGI:1919979 RGD:1563924 CDC42SE2 +HGNC:1739 CDC45 cell division cycle 45 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 human CDC45 "CDC45L2|CDC45L" "CDC45 (cell division cycle 45, S.cerevisiae, homolog)-like|CDC45 cell division cycle 45-like (S. cerevisiae)|cell division cycle 45 homolog (S. cerevisiae)" 1998-09-08 2010-03-24 2013-01-17 2014-11-19 8318 ENSG00000093009 OTTHUMG00000150386 uc002zpr.5 AF053074 NM_003504 "CCDS13762|CCDS54499|CCDS54500" O75419 "9660782|9724329|17608804" MGI:1338073 RGD:1590928 CDC45 603465 461769 +HGNC:16783 CDC73 cell division cycle 73 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 "parafibromin|FIHP" Paf1/RNA polymerase II complex component "C1orf28|HRPT2|HRPT1" "chromosome 1 open reading frame 28|hyperparathyroidism 2 (with jaw tumor)|cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)|hyperparathyroidism 1" Paf1/RNA polymerase II complex 1029 2001-10-08 2005-07-20 2013-01-17 2016-10-12 79577 ENSG00000134371 OTTHUMG00000035676 uc001gtb.4 AF312865 NM_024529 CCDS1382 Q6P1J9 "11318611|15632063|18755853" MGI:2384876 RGD:1311766 LRG_507|http://www.lrg-sequence.org/LRG/LRG_507 CDC73 607393 119271 +HGNC:16827 CDC123 cell division cycle 123 protein-coding gene gene with protein product Approved 10p14-p13 10p14-p13 D123 C10orf7 "chromosome 10 open reading frame 7|cell division cycle 123 homolog (S. cerevisiae)" 2003-03-10 2006-11-06 2013-01-17 2016-10-11 8872 ENSG00000151465 OTTHUMG00000017680 uc001ill.4 BC001600 NM_006023 CCDS7090 O75794 15319434 MGI:2138811 RGD:619766 CDC123 +HGNC:14623 CDCA2 cell division cycle associated 2 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "Repo-Man|PPP1R81" protein phosphatase 1, regulatory subunit 81 Protein phosphatase 1 regulatory subunits 694 2002-04-03 2014-11-18 157313 ENSG00000184661 OTTHUMG00000099429 uc003xep.2 BG354575 NM_152562 "CCDS6049|CCDS83266" Q69YH5 "12188893|16492807" MGI:1919787 RGD:1311003 CDCA2 +HGNC:14624 CDCA3 cell division cycle associated 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "TOME-1|GRCC8" trigger of mitotic entry 1 2002-04-03 2014-11-19 83461 ENSG00000111665 OTTHUMG00000169014 uc001qrg.3 BG354576 NM_031299 "CCDS8565|CCDS73428|CCDS76512|CCDS76513" Q99618 "9074930|12188893" MGI:1315198 RGD:1359093 CDCA3 607749 +HGNC:14625 CDCA4 cell division cycle associated 4 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "FLJ20764|Hepp" hematopoietic progenitor protein 2002-04-03 2014-11-19 55038 ENSG00000170779 OTTHUMG00000170767 uc001yqb.3 BG354577 NM_145701 CCDS9996 Q9BXL8 12188893 MGI:1919213 RGD:1563593 CDCA4 612270 +HGNC:49770 CDCA4P1 cell division cycle associated 4 pseudogene 1 pseudogene pseudogene Approved 9p22.3 09p22.3 2014-02-14 2014-02-14 100420502 ENSG00000229029 OTTHUMG00000019571 NG_023874 PGOHUM00000236391 +HGNC:49771 CDCA4P2 cell division cycle associated 4 pseudogene 2 pseudogene pseudogene Approved 1p22.3 01p22.3 2014-02-14 2014-02-14 100129348 ENSG00000224466 OTTHUMG00000010262 NG_008469 PGOHUM00000259467 +HGNC:49772 CDCA4P3 cell division cycle associated 4 pseudogene 3 pseudogene pseudogene Approved 1q32.2 01q32.2 2014-02-14 2014-02-14 100420558 ENSG00000226289 OTTHUMG00000057673 NG_027199 PGOHUM00000245189 +HGNC:49773 CDCA4P4 cell division cycle associated 4 pseudogene 4 pseudogene pseudogene Approved 1q32.2 01q32.2 2014-02-14 2014-02-14 100188945 ENSG00000234219 OTTHUMG00000057675 NG_008470 PGOHUM00000245191 +HGNC:14626 CDCA5 cell division cycle associated 5 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 sororin 2002-04-03 2014-11-19 113130 ENSG00000146670 OTTHUMG00000150420 uc001ocp.3 BG354578 NM_080668 CCDS8091 Q96FF9 "12188893|15837422" MGI:1915099 RGD:1560863 CDCA5 609374 +HGNC:14628 CDCA7 cell division cycle associated 7 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "FLJ14736|JPO1" 2002-04-03 2014-11-19 83879 ENSG00000144354 OTTHUMG00000132296 uc002uid.2 BG354580 NM_031942 "CCDS2252|CCDS2253" Q9BWT1 "11598121|12188893" MGI:1914203 RGD:1309363 CDCA7 609937 436811 +HGNC:30777 CDCA7L cell division cycle associated 7 like protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "RAM2|R1|JPO2" cell division cycle associated 7-like 2005-05-13 2016-02-03 2016-02-03 55536 ENSG00000164649 OTTHUMG00000128429 uc010kuk.4 NM_018719 "CCDS5374|CCDS47558|CCDS47559" Q96GN5 16829576 MGI:2384982 RGD:1564080 CDCA7L 609685 +HGNC:14629 CDCA8 cell division cycle associated 8 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "FLJ12042|MESRGP|BOR|DasraB" borealin Chromosomal passenger complex 1338 2002-04-03 2016-10-04 55143 ENSG00000134690 OTTHUMG00000004320 uc001cbs.5 BG354581 NM_018101 CCDS424 Q53HL2 "12188893|15260989" MGI:1196274 RGD:1566306 CDCA8 609977 +HGNC:24357 CDCP1 CUB domain containing protein 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CD318|SIMA135" CD molecules 471 2005-02-24 2016-10-05 64866 ENSG00000163814 OTTHUMG00000133090 uc003com.5 AF468010 NM_022842 "CCDS2727|CCDS46812" Q9H5V8 11466621 MGI:2442010 RGD:1305578 CDCP1 611735 CD318 +HGNC:27297 CDCP2 CUB domain containing protein 2 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 2006-01-20 2015-08-24 200008 ENSG00000157211 OTTHUMG00000155307 uc001cwv.3 NM_201546 CCDS588 Q5VXM1 12477932 MGI:3045328 RGD:1563467 CDCP2 612320 +HGNC:1748 CDH1 cadherin 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "uvomorulin|CD324" E-Cadherin UVO cadherin 1, type 1, E-cadherin (epithelial) "CD molecules|Type I classical cadherins" "471|1185" 1986-01-01 2016-01-15 2016-10-12 999 ENSG00000039068 OTTHUMG00000137561 uc002ewg.2 L08599 NM_004360 "CCDS10869|CCDS82005" P12830 9925936 MGI:88354 RGD:69279 LRG_301|http://www.lrg-sequence.org/LRG/LRG_301 CDH1 192090 119276 CD324 +HGNC:1759 CDH2 cadherin 2 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 "CDHN|CD325" N-cadherin NCAD cadherin 2, type 1, N-cadherin (neuronal) "CD molecules|Type I classical cadherins" "471|1185" 1991-09-13 2016-01-15 2016-01-15 1000 ENSG00000170558 OTTHUMG00000059940 uc002kwg.3 S42303 NM_001792 "CCDS11891|CCDS77172" P19022 "2384753|7731968|2216790" MGI:88355 RGD:69280 CDH2 114020 CDw325 +HGNC:1762 CDH3 cadherin 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "CDHP|PCAD" "cadherin 3, P-cadherin (placental)|cadherin 3, type 1, P-cadherin (placental)" Type I classical cadherins 1185 1992-07-10 2016-01-15 2016-01-15 1001 ENSG00000062038 OTTHUMG00000137560 uc002ewf.3 X63629 NM_001793 "CCDS10868|CCDS82004" P22223 1427864 MGI:88356 RGD:621089 Mutations of the P-Cadherin Gene|http://www.retina-international.org/files/sci-news/cdh3mut.htm CDH3 114021 119285 +HGNC:1763 CDH4 cadherin 4 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 R-Cadherin cadherin 4, type 1, R-cadherin (retinal) Type I classical cadherins 1185 1995-08-11 2016-01-15 2016-10-05 1002 ENSG00000179242 OTTHUMG00000032890 uc032pok.1 L34059 NM_001794 "CCDS13488|CCDS58784" P55283 "10191097|10516427" MGI:99218 RGD:621091 CDH4 603006 +HGNC:1764 CDH5 cadherin 5 protein-coding gene gene with protein product Approved 16q21 16q21 "7B4|CD144" VE-cadherin "cadherin 5, type 2, VE-cadherin (vascular epithelium)|cadherin 5, type 2 (vascular endothelium)" "CD molecules|Type II classical cadherins" "471|1186" 1992-11-20 2016-01-15 2016-10-05 1003 ENSG00000179776 OTTHUMG00000137495 uc002eom.5 X79981 NM_001795 CCDS10804 P33151 2059658 MGI:105057 RGD:1307370 CDH5 601120 CD144 +HGNC:1765 CDH6 cadherin 6 protein-coding gene gene with protein product Approved 5p13.3 05p13.3 K-Cadherin cadherin 6, type 2, K-cadherin (fetal kidney) Type II classical cadherins 1186 1997-02-10 2016-01-15 2016-01-15 1004 ENSG00000113361 OTTHUMG00000090673 uc003jhe.3 D31784 NM_004932 CCDS3894 P55285 "7743525|10191097" MGI:107435 RGD:2322 CDH6 603007 +HGNC:1766 CDH7 cadherin 7 protein-coding gene gene with protein product Approved 18q22.1 18q22.1 cadherin 7, type 2 Type II classical cadherins 1186 1997-02-10 2016-01-15 2016-01-15 1005 ENSG00000081138 OTTHUMG00000132800 uc002lkb.4 AB035301 NM_033646 "CCDS11993|CCDS82259" Q9ULB5 9615235 MGI:2442792 RGD:1306856 CDH7 605806 +HGNC:1767 CDH8 cadherin 8 protein-coding gene gene with protein product Approved 16q21 16q21 cadherin 8, type 2 Type II classical cadherins 1186 1997-02-10 2016-01-15 2016-10-05 1006 ENSG00000150394 OTTHUMG00000137493 uc002eog.3 L34060 NM_001796 CCDS10802 P55286 "9615235|2059658" MGI:107434 RGD:69286 CDH8 603008 +HGNC:1768 CDH9 cadherin 9 protein-coding gene gene with protein product Approved 5p14.1 05p14.1 cadherin 9, type 2 (T1-cadherin) Type II classical cadherins 1186 1997-02-10 2016-01-15 2016-10-05 1007 ENSG00000113100 OTTHUMG00000090671 uc003jgs.2 AB035302 NM_016279 CCDS3893 Q9ULB4 2059658 MGI:107433 RGD:1308343 CDH9 609974 +HGNC:1749 CDH10 cadherin 10 protein-coding gene gene with protein product Approved 5p14.2-p14.1 05p14.2-p14.1 cadherin 10, type 2 (T2-cadherin) Type II classical cadherins 1186 1997-02-10 2016-01-15 2016-10-11 1008 ENSG00000040731 OTTHUMG00000090667 uc003jgr.3 AF039747 NM_006727 CCDS3892 Q9Y6N8 2059658 MGI:107436 RGD:619741 CDH10 604555 +HGNC:1750 CDH11 cadherin 11 protein-coding gene gene with protein product Approved 16q21 16q21 "OB|CAD11" OB-Cadherin cadherin 11, type 2, OB-cadherin (osteoblast) Type II classical cadherins 1186 1995-03-30 2016-01-15 2016-01-15 1009 ENSG00000140937 OTTHUMG00000137494 uc002eoi.4 D21255 NM_033664 "CCDS10803|CCDS81992|CCDS81993" P55287 9615235 MGI:99217 RGD:619742 CDH11 600023 +HGNC:1751 CDH12 cadherin 12 protein-coding gene gene with protein product Approved 5p14.3 05p14.3 "Br-cadherin|CDHB" cadherin 12, type 2 (N-cadherin 2) Type II classical cadherins 1186 1995-07-14 2016-01-15 2016-01-15 1010 ENSG00000154162 OTTHUMG00000090591 uc063cos.1 L33477 NM_004061 "CCDS3890|CCDS82991" P55289 7731968 MGI:109503 RGD:1566350 CDH12 600562 +HGNC:37698 CDH12P1 cadherin 12 pseudogene 1 pseudogene pseudogene Approved 5q13.2 05q13.2 cadherin 12 (N-cadherin 2) pseudogene 1 2010-01-20 2016-01-15 2016-01-15 100093625 ENSG00000254335 OTTHUMG00000164541 NG_007328.2 PGOHUM00000300623 +HGNC:1752 CDH12P2 cadherin 12 pseudogene 2 pseudogene pseudogene Approved 5q13.2 05q13.2 C41-CAD CDH12P "cadherin 12 (N-cadherin 2) pseudogene|cadherin 12 (N-cadherin 2) pseudogene 2" 1995-11-30 2010-01-20 2016-01-15 2016-01-15 1011 ENSG00000249230 OTTHUMG00000162392 AC004999 NG_007326 "7731968|10369862" PGOHUM00000300615 +HGNC:37699 CDH12P3 cadherin 12 pseudogene 3 pseudogene pseudogene Approved 5q13.2 05q13.2 cadherin 12 (N-cadherin 2) pseudogene 3 2010-01-20 2016-01-15 2016-01-15 100093624 ENSG00000253492 OTTHUMG00000162449 NG_007327.1 PGOHUM00000257125 +HGNC:37700 CDH12P4 cadherin 12 pseudogene 4 pseudogene pseudogene Approved 5q13.2 05q13.2 cadherin 12 (N-cadherin 2) pseudogene 4 2010-01-20 2016-01-15 2016-01-15 100093626 ENSG00000253900 OTTHUMG00000164582 NG_007329.1 PGOHUM00000301002 +HGNC:1753 CDH13 cadherin 13 protein-coding gene gene with protein product Approved 16q23.3 16q23.3 CDHH "T-cadherin|H-cadherin (heart)" Major cadherins 18 1997-02-10 2013-08-27 2014-11-19 1012 ENSG00000140945 OTTHUMG00000176635 uc010vns.3 U59288 NM_001257 "CCDS56009|CCDS56010|CCDS58485|CCDS58486|CCDS58487" P55290 "8673923|9468307" MGI:99551 RGD:619745 CDH13 601364 +HGNC:1754 CDH15 cadherin 15 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "CDH3|CDH14" "cadherin 15, M-cadherin (myotubule)|cadherin 15, type 1, M-cadherin (myotubule)" Type I classical cadherins 1185 1994-12-14 2016-01-15 2016-01-15 1013 ENSG00000129910 OTTHUMG00000138045 uc002fmt.4 D83542 NM_004933 CCDS10976 P55291 1427864 MGI:106672 RGD:1303000 CDH15 114019 199894 +HGNC:1755 CDH16 cadherin 16 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 cadherin 16, KSP-cadherin 7D cadherins 1187 1997-02-10 2015-12-04 2015-12-04 1014 ENSG00000166589 OTTHUMG00000137518 uc002eql.3 AF016272 NM_004062 "CCDS10823|CCDS56002|CCDS58471|CCDS58472" O75309 "9721215|7615566" MGI:106671 RGD:1311638 CDH16 603118 +HGNC:1756 CDH17 cadherin 17 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "HPT-1|cadherin" cadherin 17, LI cadherin (liver-intestine) 7D cadherins 1187 1997-02-10 2016-01-15 2016-01-15 1015 ENSG00000079112 OTTHUMG00000164391 uc011lgp.2 X83228 NM_004063 CCDS6260 Q12864 "9615235|10191097" MGI:1095414 RGD:619748 CDH17 603017 +HGNC:1757 CDH18 cadherin 18 protein-coding gene gene with protein product Approved 5p14.3 05p14.3 "CDH14|EY-CADHERIN" cadherin 18, type 2 Type II classical cadherins 1186 1997-06-25 2016-01-15 2016-01-15 1016 ENSG00000145526 OTTHUMG00000090578 uc003jgc.4 U59325 NM_004934 "CCDS3889|CCDS54835|CCDS75229" Q13634 "9030594|10191097" MGI:1344366 RGD:1305430 CDH18 603019 +HGNC:1758 CDH19 cadherin 19 protein-coding gene gene with protein product Approved 18q22.1 18q22.1 CDH7 cadherin 19, type 2 Type II classical cadherins 1186 1998-11-18 2016-01-15 2016-01-15 28513 ENSG00000071991 OTTHUMG00000132802 uc002lkc.3 AJ007607 NM_021153 "CCDS11994|CCDS59325" Q9H159 10995570 MGI:3588198 RGD:1307169 CDH19 603016 +HGNC:1760 CDH20 cadherin 20 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "CDH7L3|Cdh7" cadherin 20, type 2 Type II classical cadherins 1186 1998-11-18 2016-01-15 2016-01-15 28316 ENSG00000101542 OTTHUMG00000132768 uc002lif.3 AF217289 NM_031891 CCDS11977 Q9HBT6 10995570 MGI:1346069 RGD:1305438 CDH20 605807 +HGNC:13251 CDH22 cadherin 22 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ998H6.1 C20orf25 "cadherin-like 22|cadherin 22, type 2" Type II classical cadherins 1186 2001-06-01 2016-01-15 2016-10-05 64405 ENSG00000149654 OTTHUMG00000033073 uc010ghk.3 AF035300 NM_021248 CCDS13395 Q9UJ99 8626716 MGI:1341843 RGD:2321 CDH22 609920 +HGNC:13733 CDH23 cadherin related 23 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 CDHR23 cadherin-related family member 23 "DFNB12|USH1D" cadherin-like 23 Cadherin related 24 2000-10-19 2016-06-03 2016-06-03 64072 ENSG00000107736 OTTHUMG00000019347 uc057twh.2 AY010111 NM_052836 "CCDS53540|CCDS73146|CCDS44429|CCDS81472|CCDS81473" Q9H251 11090341 MGI:1890219 RGD:619760 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org/|Mutations of the Cadherin-related Protein 23 Gene|http://www.retina-international.org/files/sci-news/cdh23mut.htm|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=CDH23" CDH23 605516 119281 +HGNC:31433 CDH23-AS1 CDH23 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.1 10q22.1 bA327E2.3 "C10orf106|NCRNA00223" "chromosome 10 open reading frame 106|non-protein coding RNA 223|CDH23 antisense RNA 1 (non-protein coding)" 2004-05-27 2011-08-11 2012-08-15 2012-10-12 414246 ENSG00000223817 OTTHUMG00000018425 uc057twm.1 +HGNC:14265 CDH24 cadherin 24 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 CDH11L "cadherin-like 24|cadherin 24, type 2" Type II classical cadherins 1186 2000-12-19 2016-01-15 2016-01-15 64403 ENSG00000139880 OTTHUMG00000028715 uc010akf.4 AL137477 NM_022478 "CCDS9585|CCDS9586" Q86UP0 12734196 MGI:1928330 RGD:1560161 CDH24 +HGNC:15902 CDH26 cadherin 26 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 VR20 cadherin-like 26 Major cadherins 18 2001-06-21 2009-11-20 2014-11-18 60437 ENSG00000124215 OTTHUMG00000032874 uc002ybe.4 "AF169690|AK055202" NM_177980 "CCDS13485|CCDS13486" Q8IXH8 MGI:2685856 RGD:1311632 CDH26 +HGNC:14550 CDHR1 cadherin related family member 1 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "KIAA1775|CORD15|RP65" PCDH21 "protocadherin 21|cadherin-related family member 1" Cadherin related 24 2001-02-13 2010-01-25 2015-11-23 2015-11-23 92211 ENSG00000148600 OTTHUMG00000018634 uc001kcv.4 AB053448 NM_033100 "CCDS7372|CCDS53548" Q96JP9 11597768 MGI:2157782 RGD:620420 CDHR1 609502 244385 +HGNC:18231 CDHR2 cadherin related family member 2 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "PC-LKC|FLJ20124|FLJ20383|PCLKC" protocadherin LKC PCDH24 "protocadherin 24|cadherin-related family member 2" Cadherin related 24 2008-01-18 2010-01-25 2015-11-23 2015-11-23 54825 ENSG00000074276 uc021yie.2 AB047004 NM_017675 CCDS34297 Q9BYE9 "11082270|12117771" MGI:2687323 RGD:1560576 CDHR2 +HGNC:26308 CDHR3 cadherin related family member 3 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 "FLJ44366|FLJ23834|CDH28" cadherin-related family member 3 Cadherin related 24 2010-01-25 2015-11-23 2016-10-05 222256 ENSG00000128536 OTTHUMG00000157520 uc003vdl.5 AK126338 NM_152750 "CCDS47684|CCDS75651" Q6ZTQ4 MGI:1916014 RGD:1591286 CDHR3 615610 +HGNC:34527 CDHR4 cadherin related family member 4 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 VLLR9392 CDH29 "cadherin-like 29|cadherin-related family member 4" Cadherin related 24 2008-09-18 2010-01-25 2015-11-23 2015-11-23 389118 ENSG00000187492 OTTHUMG00000158198 uc010hkz.4 NM_001007540 CCDS46829 A6H8M9 MGI:1916648 RGD:1306603 CDHR4 +HGNC:7521 CDHR5 cadherin related family member 5 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "FLJ20219|MU-PCDH" "MUCDHL|MUPCDH" "mucin and cadherin-like|mucin-like protocadherin|cadherin-related family member 5" Cadherin related 24 2000-05-19 2010-01-25 2015-11-23 2015-11-23 53841 ENSG00000099834 OTTHUMG00000132018 uc057xiz.1 AF258675 NM_021924 "CCDS7707|CCDS7708" Q9HBB8 "11031102|10801787" MGI:1919290 RGD:620504 CDHR5 606839 +HGNC:13234 CDIP1 cell death inducing p53 target 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "CDIP|LITAFL" "cell death involved p53-target|lipopolysaccharide-induced TNF factor-like" C16orf5 "chromosome 16 open reading frame 5|cell death-inducing p53 target 1" 2004-04-30 2012-11-14 2016-07-14 2016-07-14 29965 ENSG00000089486 OTTHUMG00000177172 uc002cwv.4 AF131218 NM_013399 "CCDS42114|CCDS58419|CCDS58420" Q9H305 "10570909|17599062" MGI:1913876 RGD:1310686 610503 +HGNC:1769 CDIPT CDP-diacylglycerol--inositol 3-phosphatidyltransferase protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "PIS1|PIS" phosphatidylinositol synthase CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase) 2000-02-01 2010-04-29 2015-08-24 10423 ENSG00000103502 OTTHUMG00000177144 uc002dum.5 AF014807 NM_006319 "CCDS10657|CCDS67002" O14735 9407135 MGI:105491 RGD:620576 CDIPT 605893 2.7.8.11 +HGNC:48609 CDIPT-AS1 CDIPT antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 16p11.2 16p11.2 2013-05-24 2013-05-24 2013-05-24 440356 ENSG00000214725 OTTHUMG00000177145 AK131031 NR_015396 P0DO92 +HGNC:1722 CDK1 cyclin dependent kinase 1 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 CDC28A CDC2 cell division cycle 2, G1 to S and G2 to M Cyclin dependent kinases 496 1986-01-01 2009-12-16 2016-06-08 2016-06-08 983 ENSG00000170312 OTTHUMG00000018290 uc001jld.3 BC014563 NM_001786 "CCDS7260|CCDS44408" P06493 "3553962|19884882" MGI:88351 RGD:2319 CDK1 116940 objectId:1961 +HGNC:1771 CDK2 cyclin dependent kinase 2 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 Cyclin dependent kinases 496 1992-02-28 2016-06-08 2016-06-10 1017 ENSG00000123374 OTTHUMG00000170575 uc001sit.5 M68520 NM_001798 "CCDS8898|CCDS8899|CCDS76567" P24941 "1717994|8275715" MGI:104772 RGD:70486 CDK2 116953 objectId:1973 +HGNC:14002 CDK2AP1 cyclin dependent kinase 2 associated protein 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "DORC1|doc-1|DOC1|ST19|p12DOC-1" CDK2-associated protein 1 2001-06-21 2016-06-08 2016-10-05 8099 ENSG00000111328 OTTHUMG00000168854 uc001ueq.5 AB006077 NM_004642 "CCDS9245|CCDS58289" O14519 "9331572|9506968" MGI:1202069 RGD:1308664 CDK2AP1 602198 +HGNC:30833 CDK2AP2 cyclin dependent kinase 2 associated protein 2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "DOC-1R|p14" tumor suppressor deleted in oral cancer related 1 CDK2-associated protein 2 2005-04-07 2016-06-08 2016-10-05 10263 ENSG00000167797 OTTHUMG00000167676 uc001oma.5 AF089814 NM_005851 CCDS8169 O75956 10082655 MGI:1098779 RGD:1588883 CDK2AP2 +HGNC:38492 CDK2AP2P1 cyclin dependent kinase 2 associated protein 2 pseudogene 1 pseudogene pseudogene Approved 9p11.2 09p11.2 2010-05-18 2016-06-08 2016-06-08 100289027 ENSG00000278647 OTTHUMG00000188454 NG_021654 PGOHUM00000304212 +HGNC:38493 CDK2AP2P2 cyclin dependent kinase 2 associated protein 2 pseudogene 2 pseudogene pseudogene Approved 9q13 09q13 2010-05-18 2016-06-08 2016-10-05 107133486 ENSG00000237451 OTTHUMG00000013292 NG_046643 PGOHUM00000304251 +HGNC:38494 CDK2AP2P3 cyclin dependent kinase 2 associated protein 2 pseudogene 3 pseudogene pseudogene Approved 9q13 09q13 2010-05-18 2016-06-08 2016-06-08 401525 ENSG00000226020 OTTHUMG00000058678 NG_006137 PGOHUM00000236171 +HGNC:1772 CDK3 cyclin dependent kinase 3 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 Cyclin dependent kinases 496 1994-02-14 2016-06-08 2016-06-08 1018 ENSG00000250506 OTTHUMG00000154861 uc060kgl.1 X66357 NM_001258 CCDS11736 Q00526 1639063 MGI:1916931 CDK3 123828 objectId:1975 +HGNC:1773 CDK4 cyclin dependent kinase 4 protein-coding gene gene with protein product Approved 12q14.1 12q14.1 PSK-J3 Cyclin dependent kinases 496 1993-07-28 2016-06-08 2016-10-12 1019 ENSG00000135446 OTTHUMG00000170382 uc001spv.4 M14505 NM_000075 CCDS8953 P11802 8275715 MGI:88357 RGD:621120 LRG_490|http://www.lrg-sequence.org/LRG/LRG_490 CDK4 123829 119289 objectId:1976 +HGNC:19040 CDK4P1 cyclin dependent kinase 4 pseudogene 1 pseudogene pseudogene Approved 1p21.1 01p21.1 CDK4PS cyclin dependent kinase 4 pseudogene 2003-07-21 2016-06-10 2016-06-10 2016-06-13 359941 ENSG00000225036 OTTHUMG00000011002 NG_006109 PGOHUM00000296432 +HGNC:1774 CDK5 cyclin dependent kinase 5 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 PSSALRE Cyclin dependent kinases 496 1993-07-28 2016-06-08 2016-10-05 1020 ENSG00000164885 OTTHUMG00000158414 uc003wir.3 X66364 NM_004935 "CCDS47748|CCDS55184" Q00535 "8275715|1639063" MGI:101765 RGD:70514 CDK5 123831 objectId:1977 +HGNC:21261 CDK5P1 cyclin dependent kinase 5 pseudogene 1 pseudogene pseudogene Approved 8q24.13 08q24.13 CDK5PS cyclin dependent kinase 5 pseudogene 2003-07-21 2016-06-10 2016-06-10 2016-06-10 392265 ENSG00000235165 OTTHUMG00000133575 NG_022432 PGOHUM00000303668 +HGNC:1775 CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "p35nck5a|Nck5a|p35" cyclin-dependent kinase 5, regulatory subunit 1 (p35) 1999-03-08 2016-06-08 2016-10-05 8851 ENSG00000176749 OTTHUMG00000132814 uc002hhn.4 X80343 NM_003885 CCDS11273 Q15078 8090221 MGI:101764 RGD:629472 CDK5R1 603460 +HGNC:1776 CDK5R2 cyclin dependent kinase 5 regulatory subunit 2 protein-coding gene gene with protein product Approved 2q35 02q35 "p39nck5ai|P39|NCK5AI" neuronal CDK5 activator isoform cyclin-dependent kinase 5, regulatory subunit 2 (p39) 1999-03-08 2016-06-08 2016-06-08 8941 ENSG00000171450 OTTHUMG00000133083 uc002vjf.5 U34051 NM_003936 CCDS2427 Q13319 7592934 MGI:1330828 RGD:1562530 CDK5R2 603764 +HGNC:15880 CDK5RAP1 CDK5 regulatory subunit associated protein 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "CGI-05|HSPC167|C42" C20orf34 chromosome 20 open reading frame 34 2001-06-21 2002-07-26 2002-07-22 2014-11-19 51654 ENSG00000101391 OTTHUMG00000032256 uc002wyz.5 AF152097 NM_016408 "CCDS13219|CCDS63255" Q96SZ6 "10721722|11882646|15329498" MGI:1914221 RGD:708387 CDK5RAP1 608200 +HGNC:18672 CDK5RAP2 CDK5 regulatory subunit associated protein 2 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "C48|FLJ10867|CEP215" centrosomin MCPH3 microcephaly, primary autosomal recessive 3 2002-07-22 2016-10-05 55755 ENSG00000136861 OTTHUMG00000021043 uc004bkf.5 BK005504 NM_018249 "CCDS6823|CCDS43871|CCDS75888" Q96SN8 "10721722|17764569|24466316" MGI:2384875 RGD:708451 CDK5RAP2 608201 119292 +HGNC:18673 CDK5RAP3 CDK5 regulatory subunit associated protein 3 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "MST016|FLJ13660|C53|IC53|HSF-27|OK/SW-cl.114|LZAP" "ischemic heart CDK5 activator-binding protein C53|LXXLL/leucine-zipper-containing ARFbinding protein" 2002-07-22 2016-10-05 80279 ENSG00000108465 OTTHUMG00000178682 uc002imr.5 AF110322 NM_176096 "CCDS42356|CCDS62232" Q96JB5 10721722 MGI:1933126 RGD:620002 CDK5RAP3 608202 +HGNC:1777 CDK6 cyclin dependent kinase 6 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 PLSTIRE Cyclin dependent kinases 496 1994-02-14 2016-06-08 2016-10-12 1021 ENSG00000105810 OTTHUMG00000131697 uc011khw.2 XM_006715835 CCDS5628 Q00534 1639063 MGI:1277162 RGD:621121 LRG_991|http://www.lrg-sequence.org/LRG/LRG_991 CDK6 603368 377025 objectId:1978 +HGNC:1778 CDK7 cyclin dependent kinase 7 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "CAK1|CDKN7|MO15|STK1|CAK" "cyclin-dependent kinase 7 (homolog of Xenopus MO15 cdk-activating kinase)|cyclin-dependent kinase 7 (MO15 homolog, Xenopus laevis, cdk-activating kinase)" Cyclin dependent kinases 496 1994-12-16 2016-06-08 2016-10-05 1022 ENSG00000134058 OTTHUMG00000099358 uc003jvs.5 NM_001799 "CCDS3999|CCDS83002" P50613 8069918 MGI:102956 RGD:621124 CDK7 601955 objectId:1979 +HGNC:18614 CDK7P1 cyclin dependent kinase 7 pseudogene 1 pseudogene pseudogene Approved 2q24.1 02q24.1 CDK7PS cyclin dependent kinase 7 pseudogene 2003-07-21 2016-06-10 2016-06-10 2016-06-10 220786 ENSG00000213194 OTTHUMG00000133576 AC016732 NG_001572 PGOHUM00000298200 +HGNC:1779 CDK8 cyclin dependent kinase 8 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 K35 cyclin-dependent kinase 8 "Cyclin dependent kinases|Mediator complex" "496|1061" 1998-04-29 2016-06-08 2016-06-09 1024 ENSG00000132964 OTTHUMG00000016617 uc001uqr.2 X85753 XM_005266216 CCDS9317 P49336 7568034 MGI:1196224 RGD:1560888 CDK8 603184 objectId:1980 +HGNC:18995 CDK8P1 cyclin dependent kinase 8 pseudogene 1 pseudogene pseudogene Approved 2p25.1 02p25.1 CDK8PS cyclin dependent kinase 8 pseudogene 2003-07-21 2016-06-10 2016-06-10 2016-06-10 359940 +HGNC:52296 CDK8P2 cyclin dependent kinase 8 pseudogene 2 pseudogene pseudogene Approved 2q14.1 02q14.1 2016-06-10 2016-06-10 100287419 ENSG00000227368 OTTHUMG00000153324 NG_021580 PGOHUM00000298647 +HGNC:1780 CDK9 cyclin dependent kinase 9 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "PITALRE|C-2k|TAK" CDC2L4 cyclin-dependent kinase 9 (CDC2-related kinase) "Cyclin dependent kinases|P-TEFb complex" "496|1281" 1998-04-29 2016-06-08 2016-10-05 1025 ENSG00000136807 OTTHUMG00000020715 uc004bse.3 L25676 XM_017014184 CCDS6879 P50750 "8170997|9356449" MGI:1328368 RGD:1359638 CDK9 603251 objectId:1981 +HGNC:1770 CDK10 cyclin dependent kinase 10 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 PISSLRE cyclin-dependent kinase (CDC2-like) 10 Cyclin dependent kinases 496 1998-11-30 2016-06-08 2016-06-08 8558 ENSG00000185324 OTTHUMG00000138049 uc010cio.3 L33264 XM_011523405 "CCDS10984|CCDS32514" Q15131 "8208557|8084611" MGI:2448549 RGD:1304851 CDK10 603464 objectId:1962 +HGNC:1730 CDK11A cyclin dependent kinase 11A protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "PITSLRE|CDK11-p110|CDK11-p58|CDK11-p46|p58GTA" "CDC2L3|CDC2L2" "cell division cycle 2-like 2|cell division cycle 2-like 2 (PITSLRE proteins)" Cyclin dependent kinases 496 1991-07-12 2009-12-16 2016-06-08 2016-06-08 728642 ENSG00000008128 OTTHUMG00000000703 uc009vks.4 AF067522 NM_024011 "CCDS44042|CCDS44043|CCDS81253|CCDS81254" Q9UQ88 "7920654|9750192|19884882" MGI:88353 CDK11A 116951 objectId:1963 +HGNC:1729 CDK11B cyclin dependent kinase 11B protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "CDK11-p110|CDK11-p58|CDK11-p46" CDC2L1 cell division cycle 2-like 1 (PITSLRE proteins) Cyclin dependent kinases 496 1991-07-12 2009-12-16 2016-06-08 2016-06-08 984 ENSG00000248333 OTTHUMG00000078638 uc031tml.2 AK000081 NM_001787 "CCDS72682|CCDS72683|CCDS72684" P21127 "1774066|14511641|19884882" MGI:88353 RGD:628604 CDK11B 176873 objectId:1964 +HGNC:24224 CDK12 cyclin dependent kinase 12 protein-coding gene gene with protein product Approved 17q12 17q12 "CRK7|CRKR|KIAA0904" CDC2 related protein kinase 7 CRKRS Cdc2-related kinase, arginine/serine-rich Cyclin dependent kinases 496 2005-12-13 2009-12-16 2016-06-08 2016-06-08 51755 ENSG00000167258 OTTHUMG00000133214 uc010cvv.5 AF227198 NM_016507 "CCDS11337|CCDS45666" Q9NYV4 "10048485|11683387|19884882" MGI:1098802 RGD:621111 CDK12 615514 objectId:1965 +HGNC:1733 CDK13 cyclin dependent kinase 13 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "CHED|CDC2L|KIAA1791" cholinesterase-related cell division controller CDC2L5 cell division cycle 2-like 5 (cholinesterase-related cell division controller) Cyclin dependent kinases 496 2000-01-18 2009-12-16 2016-06-08 2016-06-08 8621 ENSG00000065883 OTTHUMG00000023726 uc003thh.5 M80629 NM_003718 "CCDS5461|CCDS5462" Q14004 "1731328|19884882" MGI:1916812 RGD:1311226 CDK13 603309 objectId:1966 +HGNC:8883 CDK14 cyclin dependent kinase 14 protein-coding gene gene with protein product Approved 7q21.13 07q21.13 PFTAIRE1 PFTK1 PFTAIRE protein kinase 1 Cyclin dependent kinases 496 1996-07-26 2009-12-16 2016-06-08 2016-10-05 5218 ENSG00000058091 OTTHUMG00000023649 uc003uky.4 NM_012395 "CCDS5619|CCDS75626|CCDS75627|CCDS75628" O94921 "9202329|11313143|19884882" MGI:894318 RGD:1305544 CDK14 610679 objectId:1967 +HGNC:14434 CDK15 cyclin dependent kinase 15 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 PFTAIRE2 "ALS2CR7|PFTK2" "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 7|PFTAIRE protein kinase 2" Cyclin dependent kinases 496 2001-01-26 2009-12-16 2016-06-08 2016-10-05 65061 ENSG00000138395 OTTHUMG00000132838 uc002uys.4 AB053308 XM_011511650 "CCDS2350|CCDS58746|CCDS58747" Q96Q40 "11586298|16236519|19884882" MGI:3583944 RGD:1306205 CDK15 616147 objectId:1968 +HGNC:8749 CDK16 cyclin dependent kinase 16 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "PCTAIRE|PCTAIRE1|PCTGAIRE|FLJ16665" serine/threonine-protein kinase PCTK1 PCTAIRE protein kinase 1 Cyclin dependent kinases 496 1994-02-14 2009-12-16 2016-06-08 2016-10-05 5127 ENSG00000102225 OTTHUMG00000021438 uc004dho.4 NM_006201 "CCDS14276|CCDS48101|CCDS55408" Q00536 "1437147|19884882" MGI:97516 RGD:620584 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PCTK1 CDK16 311550 objectId:1969 +HGNC:8750 CDK17 cyclin dependent kinase 17 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 PCTAIRE2 PCTK2 PCTAIRE protein kinase 2 Cyclin dependent kinases 496 1994-04-18 2009-12-16 2016-06-08 2016-06-08 5128 ENSG00000059758 OTTHUMG00000170375 uc001tep.3 NM_002595 "CCDS9061|CCDS53819" Q00537 "9370357|19884882" MGI:97517 RGD:1565593 CDK17 603440 objectId:1970 +HGNC:8751 CDK18 cyclin dependent kinase 18 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 PCTAIRE3 PCTK3 PCTAIRE protein kinase 3 Cyclin dependent kinases 496 1994-02-14 2009-12-16 2016-06-08 2016-10-05 5129 ENSG00000117266 OTTHUMG00000037203 uc001hcr.4 X66362 NM_002596 "CCDS1454|CCDS44300" Q07002 "1437147|19884882" MGI:97518 RGD:1309523 CDK18 169190 objectId:1971 +HGNC:19338 CDK19 cyclin dependent kinase 19 protein-coding gene gene with protein product Approved 6q21 06q21 "KIAA1028|bA346C16.3" "CDK11|CDC2L6" "cyclin-dependent kinase (CDC2-like) 11|cell division cycle 2-like 6 (CDK8-like)" "Cyclin dependent kinases|Mediator complex" "496|1061" 2003-04-15 2009-12-16 2016-06-08 2016-06-08 23097 ENSG00000155111 OTTHUMG00000015365 uc003puh.2 AL122055 NM_015076 "CCDS5085|CCDS75503" Q9BWU1 "10470851|19884882" MGI:1925584 RGD:1305435 CDK19 614720 objectId:1972 +HGNC:21420 CDK20 cyclin dependent kinase 20 protein-coding gene gene with protein product Approved 9q22.1 09q22.1 p42 CCRK cell cycle related kinase Cyclin dependent kinases 496 2004-05-17 2009-12-16 2016-06-08 2016-06-08 23552 ENSG00000156345 OTTHUMG00000020161 uc004apt.4 AF035013 NM_012119 "CCDS6677|CCDS6678|CCDS35060|CCDS55324|CCDS65075" Q8IZL9 19884882 MGI:2145349 RGD:1305219 CDK20 610076 objectId:1974 +HGNC:21050 CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 FLJ20342 CDK5 regulatory subunit associated protein 1-like 1 2003-05-12 2016-01-28 2016-10-05 54901 ENSG00000145996 OTTHUMG00000014340 uc003ndd.3 AK000349 NM_017774 CCDS4546 Q5VV42 MGI:1921765 RGD:1310246 CDKAL1 611259 +HGNC:1781 CDKL1 cyclin dependent kinase like 1 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 KKIALRE cyclin-dependent kinase-like 1 (CDC2-related kinase) Cyclin dependent kinases 496 1999-09-07 2016-01-07 2016-01-07 8814 ENSG00000100490 OTTHUMG00000140290 uc001wxz.5 AF390028 XM_005268157 "CCDS9699|CCDS73637" Q00532 "1639063|7595554" MGI:1918341 RGD:1305080 CDKL1 603441 objectId:1982 +HGNC:1782 CDKL2 cyclin dependent kinase like 2 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "P56|KKIAMRE" cyclin-dependent kinase-like 2 (CDC2-related kinase) Cyclin dependent kinases 496 1999-09-07 2016-01-07 2016-10-05 8999 ENSG00000138769 OTTHUMG00000130103 uc003hiq.4 U35146 NM_003948 "CCDS3570|CCDS82933" Q92772 9000130 MGI:1858227 RGD:1309625 CDKL2 603442 objectId:1983 +HGNC:15483 CDKL3 cyclin dependent kinase like 3 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 NKIAMRE serine-threonine protein kinase NKIAMRE cyclin-dependent kinase-like 3 Cyclin dependent kinases 496 2001-04-04 2016-01-07 2016-01-07 51265 ENSG00000006837 OTTHUMG00000186341 uc003kzf.5 AF130372 NM_001113575 "CCDS47264|CCDS47265|CCDS75303" Q8IVW4 10463609 MGI:2388268 RGD:619874 CDKL3 608459 objectId:1984 2.7.11.22 +HGNC:19287 CDKL4 cyclin dependent kinase like 4 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 cyclin-dependent kinase-like 4 Cyclin dependent kinases 496 2004-05-24 2016-01-07 2016-10-05 344387 ENSG00000205111 OTTHUMG00000133574 uc002rrm.3 XM_293029 CCDS33184 Q5MAI5 MGI:3587025 RGD:1583704 CDKL4 objectId:1985 +HGNC:11411 CDKL5 cyclin dependent kinase like 5 protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 "EIEE2|CFAP247" STK9 "serine/threonine kinase 9|cyclin-dependent kinase-like 5" Cyclin dependent kinases 496 1997-10-27 2002-11-29 2016-01-07 2016-10-05 6792 ENSG00000008086 OTTHUMG00000021214 uc004cyn.4 Y15057 NM_003159 "CCDS14186|CCDS83458" O76039 "9721213|16935860" MGI:1278336 RGD:2324133 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CDKL5 CDKL5 300203 119297 objectId:1986 +HGNC:1784 CDKN1A cyclin dependent kinase inhibitor 1A protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "P21|CIP1|WAF1|SDI1|CAP20|p21CIP1|p21Cip1/Waf1" CDKN1 cyclin-dependent kinase inhibitor 1A (p21, Cip1) 1994-05-24 2016-06-08 2016-10-05 1026 ENSG00000124762 OTTHUMG00000014603 uc021yzc.2 U03106 NM_078467 CCDS4824 P38936 MGI:104556 RGD:69328 CDKN1A 116899 293293 +HGNC:42399 CDKN1A-AS1 CDKN1A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.1 06p21.1 p21NAT CDKN1A antisense RNA 1 (non-protein coding) 2011-07-11 2012-08-15 2012-10-12 100861512 BX332409 19008947 +HGNC:1785 CDKN1B cyclin dependent kinase inhibitor 1B protein-coding gene gene with protein product Approved 12p13.1 12p13.1 "KIP1|P27KIP1" cyclin-dependent kinase inhibitor 1B (p27, Kip1) 1995-09-14 2016-06-08 2016-10-05 1027 ENSG00000111276 OTTHUMG00000149914 uc001rat.3 AF480891 NM_004064 CCDS8653 P46527 8033212 MGI:104565 RGD:69062 CDKN1B 600778 200995 +HGNC:1786 CDKN1C cyclin dependent kinase inhibitor 1C protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "P57|KIP2" "BWCR|BWS" "Beckwith-Wiedemann syndrome|cyclin-dependent kinase inhibitor 1C (p57, Kip2)" 1995-09-14 2016-06-08 2016-10-12 1028 ENSG00000129757 OTTHUMG00000010040 uc001lws.5 D64137 NM_000076 "CCDS7738|CCDS44519" P49918 7729684 MGI:104564 RGD:727892 LRG_533|http://www.lrg-sequence.org/LRG/LRG_533 CDKN1C 600856 119300 +HGNC:1787 CDKN2A cyclin dependent kinase inhibitor 2A protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "CDK4I|p16|INK4a|MTS1|CMM2|ARF|p19|p14|INK4|p16INK4a|p19Arf|p14ARF" "CDKN2|MLM" cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) 1994-05-19 2016-06-08 2016-10-12 1029 ENSG00000147889 OTTHUMG00000019686 uc003zpk.4 L27211 NM_000077 "CCDS56565|CCDS6510|CCDS6511" "P42771|Q8N726" "8152487|7606716" MGI:104738 RGD:2323 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=CDKN2A|LRG_11|http://www.lrg-sequence.org/LRG/LRG_11" CDKN2A 600160 119306 +HGNC:23831 CDKN2A-AS1 CDKN2A antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9p21.3 09p21.3 bA149I2.3 C9orf53 chromosome 9 open reading frame 53 2004-07-23 2014-10-01 2014-10-01 2014-11-19 51198 ENSG00000224854 OTTHUMG00000019687 AF211119 NR_024274 Q9UH64 +HGNC:24325 CDKN2AIP CDKN2A interacting protein protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "FLJ20036|CARF" collaborates/cooperates with ARF (alternate reading frame) protein 2006-11-17 2014-11-19 55602 ENSG00000168564 OTTHUMG00000160626 uc003ivp.2 AK000043 NM_017632 "CCDS34110|CCDS82979" Q9NXV6 "12154087|16803988" MGI:1918175 RGD:1305302 CDKN2AIP 615914 +HGNC:30545 CDKN2AIPNL CDKN2A interacting protein N-terminal like protein-coding gene gene with protein product Approved 5q31.1 05q31.1 MGC13017 2007-08-16 2014-11-18 91368 ENSG00000237190 OTTHUMG00000129123 uc011cxs.3 BC008293 NM_080656 CCDS4175 Q96HQ2 12477932 MGI:1261797 RGD:1308696 CDKN2AIPNL +HGNC:39854 CDKN2AIPNLP1 CDKN2A interacting protein N-terminal like pseudogene 1 pseudogene pseudogene Approved 1q42.12 01q42.12 2011-04-05 2011-04-06 2011-04-06 391169 ENSG00000177770 OTTHUMG00000037585 NG_028305 PGOHUM00000244458 +HGNC:39855 CDKN2AIPNLP2 CDKN2A interacting protein N-terminal like pseudogene 2 pseudogene pseudogene Approved 2p23.3 02p23.3 2011-04-05 2011-04-05 100128579 ENSG00000145835 OTTHUMG00000151989 NG_028941 PGOHUM00000240000 +HGNC:39853 CDKN2AIPNLP3 CDKN2A interacting protein N-terminal like pseudogene 3 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-04-05 2011-04-05 2014-02-12 100874397 ENSG00000224351 OTTHUMG00000016769 NG_032361 PGOHUM00000248373 +HGNC:1788 CDKN2B cyclin dependent kinase inhibitor 2B protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "P15|MTS2|INK4B|TP15|CDK4I|p15INK4b" cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) 1995-06-14 2016-06-08 2016-10-05 1030 ENSG00000147883 OTTHUMG00000019691 uc003zpo.4 AB060808 NM_004936 "CCDS6512|CCDS6513" P42772 8078588 MGI:104737 RGD:2324 CDKN2B 600431 293303 +HGNC:34341 CDKN2B-AS1 CDKN2B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p21.3 09p21.3 "ANRIL|CDKN2BAS|RP11-145E5.4|NCRNA00089|p15AS|CDKN2B-AS|PCAT12" "antisense RNA in the INK4 locus|non-protein coding RNA 89|p15 antisense RNA|CDKN2B antisense RNA (non-protein coding)|prostate cancer associated transcript 12" CDKN2B antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2008-11-25 2012-01-25 2012-08-15 2014-11-19 100048912 ENSG00000240498 OTTHUMG00000019689 uc010miz.4 BC038540 NR_003529 "18048406|17440112|21532571|23416462" 613149 ANRIL +HGNC:1789 CDKN2C cyclin dependent kinase inhibitor 2C protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "INK4C|p18" cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) Ankyrin repeat domain containing 403 1995-07-06 2016-06-08 2016-06-08 1031 ENSG00000123080 OTTHUMG00000008046 uc057gkh.1 BC000598 NM_001262 CCDS555 P42773 "8001816|9636670" MGI:105388 RGD:2325 CDKN2C 603369 293311 +HGNC:1790 CDKN2D cyclin dependent kinase inhibitor 2D protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "INK4D|p19" cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) Ankyrin repeat domain containing 403 1995-07-06 2016-06-08 2016-10-05 1032 ENSG00000129355 OTTHUMG00000180583 uc002mpa.4 NM_079421 CCDS12244 P55273 8575754 MGI:105387 CDKN2D 600927 328932 +HGNC:1791 CDKN3 cyclin dependent kinase inhibitor 3 protein-coding gene gene with protein product Approved 14q22.2 14q22.2 "KAP|CDI1" "kinase associated phosphatase|cyclin-dependent kinase inhibitor|CDK2-associated dual specificity phosphatase" CDC14 phosphatases 900 1994-07-04 2016-06-08 2016-10-05 1033 ENSG00000100526 OTTHUMG00000140302 uc001xap.4 U02681 XM_011536353 "CCDS9716|CCDS45109|CCDS81804" Q16667 "8242750|7698009" MGI:1919641 RGD:1307781 CDKN3 123832 +HGNC:1792 CDL1 Cornelia de Lange syndrome 1 phenotype phenotype only Approved 3q26.3 03q26.3 CDL 1993-01-19 2011-02-10 "1956066|11391654" +HGNC:1793 CDL2 Cornelia de Lange syndrome 2 phenotype phenotype only Approved reserved reserved 1994-01-05 2011-02-10 1023 +HGNC:24913 CDNF cerebral dopamine neurotrophic factor protein-coding gene gene with protein product Approved 10p13 10p13 conserved dopamine neurotrophic factor ARMETL1 arginine-rich, mutated in early stage tumors-like 1 2004-05-27 2009-06-04 2009-06-04 2015-09-11 441549 ENSG00000185267 OTTHUMG00000017713 uc001inb.3 BC037872 NM_001029954 CCDS31148 Q49AH0 17611540 MGI:3606576 RGD:1307600 CDNF 611233 +HGNC:1795 CDO1 cysteine dioxygenase type 1 protein-coding gene gene with protein product Approved 5q22.3 05q22.3 cysteine dioxygenase, type I 1996-09-13 2013-06-11 2016-10-05 1036 ENSG00000129596 OTTHUMG00000128891 uc003krg.4 NM_001801 CCDS4121 Q16878 7524679 MGI:105925 RGD:69262 CDO1 603943 1.13.11.20 +HGNC:17104 CDON cell adhesion associated, oncogene regulated protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "ORCAM|CDO|CDON1" cell adhesion molecule-related/down-regulated by oncogenes Cdon homolog (mouse) "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2001-11-02 2012-12-07 2014-11-19 50937 ENSG00000064309 OTTHUMG00000165862 uc001qdc.5 AF004841 NM_016952 "CCDS8468|CCDS58192" Q4KMG0 9214393 MGI:1926387 RGD:708433 CDON 608707 279776 +HGNC:33710 CDPF1 cysteine rich DPF motif domain containing 1 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 LOC150383 C22orf40 "chromosome 22 open reading frame 40|cysteine-rich, DPF motif domain containing 1|cysteine rich, DPF motif domain containing 1" 2008-07-02 2012-07-18 2016-04-05 2016-04-05 150383 ENSG00000205643 OTTHUMG00000030672 uc003bhe.4 NM_207327 CCDS33670 Q6NVV7 MGI:1919605 RGD:1306001 +HGNC:1798 CDR1 cerebellar degeneration related protein 1 protein-coding gene gene with protein product Approved Xq27.1 Xq27.1 "CDR62A|CDR34" Cerebellar degeneration-related protein-1 (34kD) CDR "cerebellar degeneration-related protein (34kD)|cerebellar degeneration-related protein 1, 34kDa" 1991-08-21 2015-11-09 2015-11-09 1038 ENSG00000184258 OTTHUMG00000137398 uc004fbg.2 NM_004065 CCDS14670 P51861 2326268 RGD:6499092 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CDR1 CDR1 302650 +HGNC:48926 CDR1-AS CDR1 antisense RNA non-coding RNA RNA, long non-coding Approved Xq27.1 Xq27.1 "CDR1NAT|ciRS-7|CDR1as" "CDR1 natural antisense transcript|circular RNA sponge for miR-7" Long non-coding RNAs 788 2013-07-04 2014-10-22 103611090 ENSG00000281508 OTTHUMG00000189747 AK054921 "23446346|23446348|21964070" cdr1as +HGNC:1799 CDR2 cerebellar degeneration related protein 2 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "CDR62|Yo" Yo paraneoplastic antigen "cerebellar degeneration-related protein (62kD)|cerebellar degeneration-related protein 2, 62kDa" 1991-08-21 2015-11-09 2016-01-15 1039 ENSG00000140743 OTTHUMG00000175463 uc002dkn.3 M63256 NM_001802 CCDS32404 Q01850 2014264 MGI:1100885 RGD:1310578 CDR2 117340 +HGNC:29999 CDR2L cerebellar degeneration related protein 2 like protein-coding gene gene with protein product Approved 17q25.1 17q25.1 HUMPPA paraneoplastic antigen cerebellar degeneration-related protein 2-like 2005-11-14 2016-03-31 2016-03-31 30850 ENSG00000109089 OTTHUMG00000150435 uc002jml.5 NM_014603 CCDS11710 Q86X02 MGI:2684867 RGD:1306881 +HGNC:14379 CDRT1 CMT1A duplicated region transcript 1 protein-coding gene gene with protein product Approved 17p12 17p12 "HREP|SM25H2|FBXW10B" FBXW10P1 "F-box and WD repeat domain containing 10 pseudogene 1|F-box and WD-40 domain protein 10 pseudogene 1" "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 2001-02-28 2016-10-05 374286 ENSG00000241322 OTTHUMG00000059074 uc002gov.5 U65652 NM_006382 "CCDS45619|CCDS73996" O95170 "9787083|11381029" MGI:3052463 CDRT1 604596 +HGNC:14381 CDRT2 CMT1A duplicated region transcript 2 other unknown Approved 17p12 17p12 2001-02-28 2008-07-10 94144 11381029 +HGNC:14382 CDRT3 CMT1A duplicated region transcript 3 other unknown Approved 17p12 17p12 2001-02-28 2008-07-03 94145 AI220446 11381029 +HGNC:14383 CDRT4 CMT1A duplicated region transcript 4 protein-coding gene gene with protein product Approved 17p12 17p12 FLJ36674 2001-03-01 2015-08-24 284040 ENSG00000239704 OTTHUMG00000059070 uc032eur.1 BC029542 NM_173622 CCDS73995 Q8N9R6 11381029 MGI:1913588 RGD:2323961 CDRT4 +HGNC:14384 CDRT5 CMT1A duplicated region transcript 5 other unknown Approved 17p12 17p12 2001-02-28 2014-11-19 94148 11381029 +HGNC:14386 CDRT7 CMT1A duplicated region transcript 7 (non-protein coding) non-coding RNA RNA, long non-coding Approved 17p12 17p12 "NCRNA00025|LINC00025" "non-protein coding RNA 25|long intergenic non-protein coding RNA 25" 2001-02-28 2008-08-13 2012-10-16 94150 ENSG00000259944 OTTHUMG00000058961 uc021tqj.1 "BX093265|AI218510" NR_033371 11381029 +HGNC:14387 CDRT8 CMT1A duplicated region transcript 8 non-coding RNA RNA, long non-coding Approved 17p12 17p12 2001-02-28 2014-10-06 94151 ENSG00000265163 OTTHUMG00000178871 uc032eum.2 "AI150443|CR737651|AA432141|AA431126" NR_103559 11381029 +HGNC:14390 CDRT10 CMT1A duplicated region transcript 10 other unknown Approved 17p12 17p12 2001-02-28 2008-07-17 94153 11381029 +HGNC:14391 CDRT11 CMT1A duplicated region transcript 11 other unknown Approved 17p12 17p12 2001-02-28 2008-07-17 94154 11381029 +HGNC:14392 CDRT12 CMT1A duplicated region transcript 12 other unknown Approved 17p12 17p12 2001-02-28 2008-07-03 94155 11381029 +HGNC:14393 CDRT13 CMT1A duplicated region transcript 13 other unknown Approved 17p12 17p12 2001-02-28 2008-07-17 94156 11381029 +HGNC:14395 CDRT15 CMT1A duplicated region transcript 15 protein-coding gene gene with protein product Approved 17p12 17p12 2001-02-28 2014-11-19 146822 ENSG00000223510 OTTHUMG00000179686 uc010vvu.3 AF355097 NM_001007530 CCDS32569 Q96T59 11381029 CDRT15 +HGNC:34075 CDRT15L2 CMT1A duplicated region transcript 15-like 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 2008-04-14 2008-10-30 256223 ENSG00000214819 OTTHUMG00000059557 uc021tsn.1 XM_170840 CCDS54096 A8MXV6 CDRT15L2 +HGNC:33168 CDRT15P1 CMT1A duplicated region transcript 15 pseudogene 1 pseudogene pseudogene Approved 17p12 17p12 CDRT15P CMT1A duplicated region transcript 15 pseudogene 2006-11-08 2011-09-06 2011-09-06 2015-09-21 94158 ENSG00000141028 OTTHUMG00000178372 BX118788 NR_003261 PGOHUM00000294272 +HGNC:34074 CDRT15P2 CMT1A duplicated region transcript 15 pseudogene 2 pseudogene pseudogene Approved 17p12 17p12 CDRT15L1 CMT1A duplicated region transcript 15-like 1 2008-04-14 2011-09-06 2011-09-06 2011-09-06 644694 ENSG00000227255 OTTHUMG00000059141 XM_932309 PGOHUM00000237231 +HGNC:1800 CDS1 CDP-diacylglycerol synthase 1 protein-coding gene gene with protein product Approved 4q21.23 04q21.23 phosphatidate cytidylyltransferase 1998-07-03 2015-11-13 2016-10-05 1040 ENSG00000163624 OTTHUMG00000130428 uc011ccv.3 U65887 XM_017007648 CCDS3608 Q92903 "9806839|9115637" MGI:1921846 RGD:621185 CDS1 603548 2.7.7.41 +HGNC:1801 CDS2 CDP-diacylglycerol synthase 2 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 phosphatidate cytidylyltransferase 2 1998-12-21 2015-11-13 2016-10-05 8760 ENSG00000101290 OTTHUMG00000031801 uc002wls.4 AF069532 NM_003818 CCDS13088 O95674 "9806839|9889000" MGI:1332236 RGD:621186 CDS2 603549 2.7.7.41 +HGNC:1802 CDSN corneodesmosin protein-coding gene gene with protein product Approved 6p21.33 06p21.33 D6S586E 1998-05-14 2016-10-05 1041 ENSG00000204539 OTTHUMG00000031150 uc011fbm.3 AF030130 NM_001264 CCDS34389 Q15517 "9395522|8415725" MGI:3505689 RGD:1598543 CDSN 602593 119324 +HGNC:24576 CDT1 chromatin licensing and DNA replication factor 1 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "DUP|RIS2" 2006-05-25 2014-11-19 81620 ENSG00000167513 OTTHUMG00000173467 uc002flu.4 AF070552 NM_030928 CCDS32510 Q9H211 "11896191|11555648" MGI:1914427 RGD:1309211 CDT1 605525 260341 +HGNC:26928 CDV3 CDV3 homolog protein-coding gene gene with protein product Approved 3q22.1 03q22.1 H41 carnitine deficiency-associated gene expressed in ventricle 3 (mouse) CDV3 homolog (mouse) 2006-01-09 2016-04-27 2016-04-27 55573 ENSG00000091527 OTTHUMG00000159764 uc003epq.4 AK096865 NM_017548 "CCDS3079|CCDS46917|CCDS46918|CCDS75013|CCDS75014|CCDS75015" Q9UKY7 10497265 MGI:2448759 RGD:1359113 CDV3 +HGNC:42387 CDV3P1 CDV3 pseudogene 1 pseudogene pseudogene Approved 3q11.2 03q11.2 CDV3 homolog (mouse) pseudogene 1 2011-07-05 2014-07-02 2014-11-19 100129736 ENSG00000176243 OTTHUMG00000159188 NG_022257 PGOHUM00000238102 +HGNC:1805 CDX1 caudal type homeobox 1 protein-coding gene gene with protein product Approved 5q32 05q32 caudal type homeo box transcription factor 1 HOXL subclass homeoboxes 518 1995-05-05 2007-07-09 2014-11-18 1044 ENSG00000113722 OTTHUMG00000169772 uc003lrq.4 U51095 NM_001804 CCDS4304 P47902 8530027 MGI:88360 RGD:621233 CDX1 600746 8422 +HGNC:1806 CDX2 caudal type homeobox 2 protein-coding gene gene with protein product Approved 13q12.2 13q12.2 CDX3 caudal type homeo box transcription factor 2 HOXL subclass homeoboxes 518 1994-09-07 2007-07-09 2015-08-24 1045 ENSG00000165556 OTTHUMG00000016640 uc001urv.5 Y13709 XM_011534875 CCDS9328 Q99626 7698771 MGI:88361 RGD:621234 CDX2 600297 8423 +HGNC:1808 CDX4 caudal type homeobox 4 protein-coding gene gene with protein product Approved Xq13.2 Xq13.2 caudal type homeo box transcription factor 4 HOXL subclass homeoboxes 518 1995-06-14 2007-07-09 2014-11-18 1046 ENSG00000131264 OTTHUMG00000021831 uc011mqk.3 AF029879 NM_005193 CCDS14424 O14627 7655457 MGI:88362 RGD:1561529 CDX4 300025 8424 +HGNC:1809 CDY1 chromodomain Y-linked 1 protein-coding gene gene with protein product Approved Yq11.23 Yq11.23 CDY1A chromodomain protein, Y chromosome, 1 1999-03-02 2016-07-14 2016-10-05 9085 ENSG00000172288 OTTHUMG00000045274 uc004fxe.4 AF000981 NM_170723 "CCDS14801|CCDS14802" Q9Y6F8 9381176 CDY1 400016 2.3.1.48 +HGNC:23920 CDY1B chromodomain Y-linked 1B protein-coding gene gene with protein product Approved Yq11.23 Yq11.23 chromodomain protein, Y-linked, 1B 2004-08-25 2016-07-14 2016-10-05 253175 ENSG00000172352 OTTHUMG00000045037 uc004fwa.4 NM_001003894 "CCDS35486|CCDS35487" Q9Y6F8 "9381176|10192397" CDY1B +HGNC:1810 CDY2A chromodomain Y-linked 2A protein-coding gene gene with protein product Approved Yq11.222 Yq11.222 CDY2 "chromodomain protein, Y chromosome, 2|chromodomain protein, Y-linked, 2" 1999-04-07 2005-12-16 2016-07-14 2016-07-14 9426 ENSG00000182415 OTTHUMG00000041657 uc004ftm.2 AF080598 NM_004825 CCDS14789 Q9Y6F7 10192397 CDY2A 400018 +HGNC:23921 CDY2B chromodomain Y-linked 2B protein-coding gene gene with protein product Approved Yq11.222 Yq11.222 CDY chromodomain protein, Y-linked, 2B 2005-12-16 2016-07-14 2016-07-14 203611 ENSG00000129873 OTTHUMG00000041652 uc004ftl.2 BC069087 NM_001001722 CCDS35473 Q9Y6F7 "9381176|10192397" CDY2B +HGNC:23849 CDY3P chromodomain Y-linked 3 pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2003-12-17 2016-07-14 2016-07-14 286556 ENSG00000232235 OTTHUMG00000041411 NG_003131 12815422 PGOHUM00000233699 +HGNC:23872 CDY4P chromodomain Y-linked 4 pseudogene pseudogene pseudogene Approved Yq11.221 Yq11.221 2003-12-17 2016-07-14 2016-10-05 386729 ENSG00000228411 OTTHUMG00000036471 NG_003138 12815422 PGOHUM00000233747 +HGNC:23850 CDY5P chromodomain Y-linked 5 pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2003-12-17 2016-07-14 2016-10-05 378008 ENSG00000226449 OTTHUMG00000041659 NG_003132 12815422 PGOHUM00000233972 +HGNC:23853 CDY6P chromodomain Y-linked 6 pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2003-12-17 2016-07-14 2016-10-05 386730 ENSG00000229138 OTTHUMG00000041653 NG_003139 12815422 PGOHUM00000233765 +HGNC:23854 CDY7P chromodomain Y-linked 7 pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2003-12-17 2016-07-14 2016-10-05 386731 ENSG00000237558 OTTHUMG00000041655 NG_003140 12815422 PGOHUM00000233976 +HGNC:23855 CDY8P chromodomain Y-linked 8 pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2003-12-17 2016-07-14 2016-10-05 386732 ENSG00000224033 OTTHUMG00000041958 NG_003141 12815422 PGOHUM00000233978 +HGNC:23851 CDY9P chromodomain Y-linked 9 pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2003-12-17 2016-07-14 2016-10-05 378011 ENSG00000232899 OTTHUMG00000041963 NG_003133 12815422 PGOHUM00000233770 +HGNC:23848 CDY10P chromodomain Y-linked 10 pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2003-12-17 2016-07-14 2016-07-14 140043 ENSG00000226042 OTTHUMG00000043576 NG_003130 12815422 PGOHUM00000233801 +HGNC:23852 CDY11P chromodomain protein Y-linked 11 pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2003-12-17 2016-07-14 2016-07-14 378014 ENSG00000230029 OTTHUMG00000043581 NG_003154 12815422 PGOHUM00000234015 +HGNC:23856 CDY12P chromodomain Y-linked 12 pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2003-12-17 2016-07-14 2016-07-14 386734 ENSG00000228850 OTTHUMG00000043603 NG_003142 12815422 PGOHUM00000234020 +HGNC:23857 CDY13P chromodomain Y-linked 13 pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2003-12-17 2016-07-14 2016-07-14 386735 ENSG00000224873 OTTHUMG00000043848 NG_003143 12815422 PGOHUM00000233814 +HGNC:23858 CDY14P chromodomain protein Y-linked 14 pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2003-12-17 2016-07-14 2016-07-14 386736 ENSG00000226873 OTTHUMG00000044995 NG_003144 12815422 PGOHUM00000234041 +HGNC:23859 CDY15P chromodomain Y-linked 15 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-12-17 2016-07-14 2016-10-05 386737 ENSG00000223362 OTTHUMG00000044980 NG_003145 12815422 PGOHUM00000233832 +HGNC:23860 CDY16P chromodomain Y-linked 16 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-12-17 2016-07-14 2016-10-05 386738 NG_003146 12815422 +HGNC:23861 CDY17P chromodomain Y-linked 17 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-12-17 2016-07-14 2016-10-05 386739 ENSG00000231375 OTTHUMG00000045046 NG_003147 12815422 PGOHUM00000233837 +HGNC:23862 CDY18P chromodomain Y-linked 18 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-12-17 2016-07-14 2016-10-05 386740 ENSG00000232205 OTTHUMG00000045040 NG_003148 12815422 PGOHUM00000234051 +HGNC:23863 CDY19P chromodomain Y-linked 19 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 chromodomain protein, Y-linked 19 pseudogene 2003-12-17 2016-07-14 2016-10-05 386741 ENSG00000237823 OTTHUMG00000045266 NG_003149 12815422 PGOHUM00000233871 +HGNC:23864 CDY20P chromodomain Y-linked 20 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-12-17 2016-07-14 2016-10-05 386742 ENSG00000225609 OTTHUMG00000045272 NG_003150 12815422 PGOHUM00000234085 +HGNC:23865 CDY21P chromodomain Y-linked 21 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-12-17 2016-07-14 2016-10-05 386743 NG_003151 12815422 +HGNC:23866 CDY22P chromodomain Y-linked 22 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-12-17 2016-07-14 2016-10-05 386744 ENSG00000229343 OTTHUMG00000045287 NG_003152 12815422 PGOHUM00000234090 +HGNC:23867 CDY23P chromodomain Y-linked 23 pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-12-17 2016-07-14 2016-07-14 386745 ENSG00000231716 OTTHUMG00000045273 NG_003153 12815422 PGOHUM00000233881 +HGNC:1811 CDYL chromodomain Y-like protein-coding gene gene with protein product Approved 6p25.1 06p25.1 "DKFZP586C1622|CDYL1" "CDY-like, autosomal|testis-specific chromodomain Y-like protein" "chromodomain protein, Y chromosome-like|chromodomain protein, Y-like" 1999-04-07 2016-07-14 2016-07-14 9425 ENSG00000153046 OTTHUMG00000014170 uc003mwj.4 AF081258 NM_004824 "CCDS4491|CCDS47364" Q9Y232 10192397 MGI:1339956 RGD:1549745 CDYL 603778 +HGNC:23030 CDYL2 chromodomain Y-like 2 protein-coding gene gene with protein product Approved 16q23.2 16q23.2 FLJ38866 chromodomain Y-like protein 2 2003-08-26 2016-07-14 2016-07-14 124359 ENSG00000166446 OTTHUMG00000177004 uc002ffs.4 AK096185 NM_152342 CCDS32493 Q8N8U2 12837688 MGI:1923046 RGD:1309548 CDYL2 +HGNC:1812 CDYP entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-03-28 +HGNC:1814 CEACAM1 carcinoembryonic antigen related cell adhesion molecule 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "BGP1|CD66a" BGP carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein) "CD molecules|V-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "471|590|594|906" 1989-06-30 2016-01-14 2016-01-14 634 ENSG00000079385 OTTHUMG00000151078 uc002otv.3 M72238 NM_001712 "CCDS12609|CCDS46089|CCDS54272|CCDS54273|CCDS54274" P13688 "2457922|2025273" "MGI:1347245|MGI:1347246" RGD:67396 CEACAM1 109770 CD66a +HGNC:1815 CEACAM3 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CD66d CGM1 carcinoembryonic antigen-related cell adhesion molecule 3 "CD molecules|V-set domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "471|590|906" 1991-09-12 2016-01-14 2016-01-14 1084 ENSG00000170956 OTTHUMG00000150142 uc032hyd.2 E03349 NM_001815 "CCDS12586|CCDS62685" P40198 CEACAM3 609142 CD66d +HGNC:1816 CEACAM4 carcinoembryonic antigen related cell adhesion molecule 4 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CGM7 carcinoembryonic antigen-related cell adhesion molecule 4 "V-set domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "590|906" 1991-09-12 2016-01-14 2016-01-14 1089 ENSG00000105352 OTTHUMG00000151065 uc002orh.1 D90276 NM_001817 CCDS33033 O75871 2050678 RGD:708435 CEACAM4 +HGNC:1817 CEACAM5 carcinoembryonic antigen related cell adhesion molecule 5 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CD66e CEA carcinoembryonic antigen-related cell adhesion molecule 5 "CD molecules|V-set domain containing|I-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "471|590|593|594|906" 1986-01-01 2016-01-14 2016-10-05 1048 ENSG00000105388 OTTHUMG00000151061 uc002orl.4 M17303 NM_004363 "CCDS12584|CCDS77302" P06731 CEACAM5 114890 objectId:2836 CD66e +HGNC:1818 CEACAM6 carcinoembryonic antigen related cell adhesion molecule 6 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CD66c NCA carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific cross reacting antigen) "CD molecules|V-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "471|590|594|906" 1989-06-30 2016-01-14 2016-10-05 4680 ENSG00000086548 OTTHUMG00000151064 uc032hyc.2 M29541 NM_002483 CCDS12585 P40199 RGD:9070653 CEACAM6 163980 CD66c +HGNC:1819 CEACAM7 carcinoembryonic antigen related cell adhesion molecule 7 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CEA carcinoembryonic antigen gene family member 2 CGM2 carcinoembryonic antigen-related cell adhesion molecule 7 "V-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "590|594|906" 1991-09-12 2016-01-14 2016-01-14 1087 ENSG00000007306 OTTHUMG00000151063 uc002ori.2 X98311 NM_006890 CCDS12583 Q14002 "7806520|9135022" CEACAM7 +HGNC:1820 CEACAM8 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CD66b CGM6 carcinoembryonic antigen-related cell adhesion molecule 8 "CD molecules|V-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "471|590|594|906" 1991-09-12 2016-01-14 2016-01-14 1088 ENSG00000124469 OTTHUMG00000151124 uc002oud.3 D90064 XM_011526340 CCDS12610 P31997 "2208113|2306228" CEACAM8 615747 CD66b +HGNC:31948 CEACAM16 carcinoembryonic antigen related cell adhesion molecule 16 protein-coding gene gene with protein product Approved 19q13.31-q13.32 19q13.31-q13.32 DFNA4B carcinoembryonic antigen-related cell adhesion molecule 16 "V-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "590|594|906" 2005-07-25 2016-01-14 2016-10-11 388551 ENSG00000213892 OTTHUMG00000151519 uc060zsz.1 XM_371177 CCDS54278 Q2WEN9 21368133 MGI:2685615 RGD:1306386 CEACAM16 614591 265505 +HGNC:31949 CEACAM18 carcinoembryonic antigen related cell adhesion molecule 18 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 carcinoembryonic antigen-related cell adhesion molecule 18 "V-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "590|594|906" 2005-07-25 2016-01-14 2016-01-14 729767 ENSG00000213822 OTTHUMG00000151557 uc061bxs.1 XM_011527258 A8MTB9 MGI:1919681 RGD:1563539 CEACAM18 +HGNC:31951 CEACAM19 carcinoembryonic antigen related cell adhesion molecule 19 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 CEAL1 carcinoembryonic antigen-related cell adhesion molecule 19 "V-set domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "590|906" 2005-07-25 2016-01-14 2016-01-14 56971 ENSG00000186567 OTTHUMG00000151528 uc002ozo.5 AF406955 NM_020219 "CCDS12641|CCDS46108" Q7Z692 MGI:2443001 RGD:1589436 CEACAM19 606691 +HGNC:24879 CEACAM20 carcinoembryonic antigen related cell adhesion molecule 20 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 UNQ9366 carcinoembryonic antigen-related cell adhesion molecule 20 "I-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "593|594|906" 2005-07-25 2016-01-14 2016-01-14 125931 ENSG00000273777 OTTHUMG00000151532 uc032hzq.1 AY358129 NM_198444 "CCDS74390|CCDS74391|CCDS74392|CCDS74393" Q6UY09 12975309 MGI:1918851 RGD:1311281 CEACAM20 +HGNC:28834 CEACAM21 carcinoembryonic antigen related cell adhesion molecule 21 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "R29124_1|FLJ13540" carcinoembryonic antigen-related cell adhesion molecule 21 "V-set domain containing|Immunoglobulin like domain containing|Carcinoembryonic antigen related cell adhesion molecule family" "590|594|906" 2005-07-25 2016-01-14 2016-01-14 90273 ENSG00000007129 OTTHUMG00000151062 uc002ore.5 AK023602 NM_033543 "CCDS46086|CCDS46087|CCDS74373" Q3KPI0 12477932 RGD:70954 CEACAM21 +HGNC:38029 CEACAM22P carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudogene pseudogene Approved 19q13.31 19q13.31 carcinoembryonic antigen-related cell adhesion molecule 22, pseudogene Carcinoembryonic antigen related cell adhesion molecule family 906 2010-03-23 2016-01-14 2016-01-14 388550 ENSG00000230666 OTTHUMG00000151530 NR_027754 20132533 PGOHUM00000250581 +HGNC:1821 CEACAMP1 carcinoembryonic antigen related cell adhesion molecule pseudogene 1 pseudogene pseudogene Approved 19q13.2 19q13.2 CGM8 carcinoembryonic antigen-related cell adhesion molecule pseudogene 1 Carcinoembryonic antigen related cell adhesion molecule family 906 1991-09-12 2010-03-23 2016-01-14 2016-01-14 1090 ENSG00000233681 OTTHUMG00000151128 M96921 NG_001096 1572649 +HGNC:1824 CEACAMP2 carcinoembryonic antigen related cell adhesion molecule pseudogene 2 pseudogene pseudogene Approved 19q13.2 19q13.2 CGM9 carcinoembryonic antigen-related cell adhesion molecule pseudogene 2 Carcinoembryonic antigen related cell adhesion molecule family 906 1991-09-12 2010-03-23 2016-01-14 2016-01-14 1091 ENSG00000230558 OTTHUMG00000151119 M96922 NG_001097 1427854 PGOHUM00000234329 +HGNC:1825 CEACAMP3 carcinoembryonic antigen related cell adhesion molecule pseudogene 3 pseudogene pseudogene Approved 19q13.2 19q13.2 "CGM10|CEACAM24P" "carcinoembryonic antigen-related cell adhesion molecule 24, pseudogene|carcinoembryonic antigen-related cell adhesion molecule pseudogene 3" Carcinoembryonic antigen related cell adhesion molecule family 906 1992-05-06 2010-03-23 2016-01-14 2016-01-14 1092 ENSG00000239736 OTTHUMG00000151558 M96923 NG_001098 "7851895|7851896" PGOHUM00000234702 +HGNC:1826 CEACAMP4 carcinoembryonic antigen related cell adhesion molecule pseudogene 4 pseudogene pseudogene Approved 19q13.31 19q13.31 CGM11 carcinoembryonic antigen-related cell adhesion molecule pseudogene 4 Carcinoembryonic antigen related cell adhesion molecule family 906 1992-05-06 2010-03-23 2016-01-14 2016-10-05 1093 ENSG00000230681 OTTHUMG00000151545 M96924 NG_001099 "7851896|7851895" +HGNC:1827 CEACAMP5 carcinoembryonic antigen related cell adhesion molecule pseudogene 5 pseudogene pseudogene Approved 19q13.2 19q13.2 CGM12 carcinoembryonic antigen-related cell adhesion molecule pseudogene 5 Carcinoembryonic antigen related cell adhesion molecule family 906 1994-11-04 2010-03-23 2016-01-14 2016-01-14 1085 ENSG00000231561 OTTHUMG00000151122 U06672 NG_001094 "7851895|7851896" PGOHUM00000263713 +HGNC:1828 CEACAMP6 carcinoembryonic antigen related cell adhesion molecule pseudogene 6 pseudogene pseudogene Approved 19q13.2 19q13.2 CGM13 carcinoembryonic antigen-related cell adhesion molecule pseudogene 6 Carcinoembryonic antigen related cell adhesion molecule family 906 1994-11-04 2010-03-23 2016-01-14 2016-01-14 1094 ENSG00000238092 OTTHUMG00000151126 U06674 NG_001100 "7851896|7851895" PGOHUM00000234333 +HGNC:1829 CEACAMP7 carcinoembryonic antigen related cell adhesion molecule pseudogene 7 pseudogene pseudogene Approved 19q13.31 19q13.31 CGM14 carcinoembryonic antigen-related cell adhesion molecule pseudogene 7 Carcinoembryonic antigen related cell adhesion molecule family 906 1994-11-04 2010-03-23 2016-01-14 2016-10-05 1095 ENSG00000227349 OTTHUMG00000151121 U06675 NG_001101 "7851896|7851895" +HGNC:1830 CEACAMP8 carcinoembryonic antigen related cell adhesion molecule pseudogene 8 pseudogene pseudogene Approved 19q13.31 19q13.31 CGM15 carcinoembryonic antigen-related cell adhesion molecule pseudogene 8 Carcinoembryonic antigen related cell adhesion molecule family 906 1994-11-04 2010-03-23 2016-01-14 2016-10-05 1096 ENSG00000236932 OTTHUMG00000151548 U06676 NG_001102 "7851896|7851895|24312300" PGOHUM00000234343 +HGNC:1831 CEACAMP9 carcinoembryonic antigen related cell adhesion molecule pseudogene 9 pseudogene pseudogene Approved 19q13.31 19q13.31 CGM16 carcinoembryonic antigen-related cell adhesion molecule pseudogene 9 Carcinoembryonic antigen related cell adhesion molecule family 906 1994-11-04 2010-03-23 2016-01-14 2016-10-05 1097 ENSG00000230529 OTTHUMG00000151549 U06677 NG_001103 "7851895|7851896" +HGNC:1822 CEACAMP10 carcinoembryonic antigen related cell adhesion molecule pseudogene 10 pseudogene pseudogene Approved 19q13.31 19q13.31 CGM17 carcinoembryonic antigen-related cell adhesion molecule pseudogene 10 Carcinoembryonic antigen related cell adhesion molecule family 906 1994-11-04 2010-03-23 2016-01-14 2016-10-05 1098 ENSG00000241104 OTTHUMG00000151538 U06678 NG_001104 "7851896|7851895" +HGNC:1823 CEACAMP11 carcinoembryonic antigen related cell adhesion molecule pseudogene 11 pseudogene pseudogene Approved 19q13.31 19q13.31 CGM18 carcinoembryonic antigen-related cell adhesion molecule pseudogene 11 Carcinoembryonic antigen related cell adhesion molecule family 906 1994-11-04 2010-03-23 2016-01-14 2016-10-05 1086 ENSG00000236123 OTTHUMG00000151540 U06679 NG_001095 "7851896|7851895" +HGNC:1832 CEAL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:1833 CEBPA CCAAT/enhancer binding protein alpha protein-coding gene gene with protein product Approved 19q13.11 19q13.11 C/EBP-alpha CEBP CCAAT/enhancer binding protein (C/EBP), alpha "Basic leucine zipper proteins|CCAAT/enhancer binding proteins " "506|1165" 1991-11-27 2016-01-07 2016-10-12 1050 ENSG00000245848 OTTHUMG00000161461 uc002nun.4 M37197 NM_004364 CCDS54243 P49715 "1535333|1840554" MGI:99480 RGD:2326 LRG_456|http://www.lrg-sequence.org/LRG/LRG_456 CEBPA 116897 233165 +HGNC:25710 CEBPA-AS1 CEBPA antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 19q13.11 19q13.11 "CEBPA antisense RNA 1 (non-protein coding)|CEBPA antisense RNA 1" 2012-08-10 2012-08-16 2015-01-30 80054 ENSG00000267296 OTTHUMG00000180429 uc002nuo.4 "AK022417|BC027959" NR_026887 +HGNC:1834 CEBPB CCAAT/enhancer binding protein beta protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "LAP|CRP2|NFIL6|IL6DBP|C/EBP-beta" "liver-enriched transcriptional activator protein|nuclear factor of interleukin 6|interleukin 6-dependent DNA-binding protein" TCF5 CCAAT/enhancer binding protein (C/EBP), beta "Basic leucine zipper proteins|CCAAT/enhancer binding proteins " "506|1165" 1991-02-27 2016-01-07 2016-10-05 1051 ENSG00000172216 OTTHUMG00000032715 uc002xvi.4 AY193834 NM_005194 CCDS13429 P17676 "1535333|1840554" MGI:88373 RGD:2327 CEBPB 189965 +HGNC:51226 CEBPB-AS1 CEBPB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-08-08 2014-08-08 101927559 ENSG00000277449 OTTHUMG00000186944 BX463443 NR_125739 +HGNC:1835 CEBPD CCAAT/enhancer binding protein delta protein-coding gene gene with protein product Approved 8q11.21 08q11.21 "CRP3|CELF|C/EBP-delta|NF-IL6-beta" CCAAT/enhancer binding protein (C/EBP), delta "Basic leucine zipper proteins|CCAAT/enhancer binding proteins " "506|1165" 1992-06-24 2016-01-07 2016-01-15 1052 ENSG00000221869 OTTHUMG00000162290 uc003xqh.2 NM_005195 CCDS6142 P49716 "1840554|1884998" MGI:103573 RGD:2328 CEBPD 116898 +HGNC:1836 CEBPE CCAAT/enhancer binding protein epsilon protein-coding gene gene with protein product Approved 14q11.2 14q11.2 CRP1 CCAAT/enhancer binding protein (C/EBP), epsilon "Basic leucine zipper proteins|CCAAT/enhancer binding proteins " "506|1165" 1992-06-24 2016-01-07 2016-10-12 1053 ENSG00000092067 OTTHUMG00000028719 uc001wiv.3 NM_001805 CCDS9589 Q15744 8661101 MGI:103572 RGD:2329 "CEBPEbase: Mutation registry for Neutrophil-specific granule deficiency|http://structure.bmc.lu.se/idbase/CEBPEbase/|LRG_45|http://www.lrg-sequence.org/LRG/LRG_45" CEBPE 600749 183890 +HGNC:1837 CEBPG CCAAT/enhancer binding protein gamma protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "GPE1BP|IG/EBP-1" CCAAT/enhancer binding protein (C/EBP), gamma "Basic leucine zipper proteins|CCAAT/enhancer binding proteins " "506|1165" 1992-07-08 2016-01-07 2016-10-05 1054 ENSG00000153879 OTTHUMG00000180469 uc002nup.4 U20240 NM_001806 CCDS12432 P53567 1884998 MGI:104982 RGD:2330 CEBPG 138972 +HGNC:24218 CEBPZ CCAAT/enhancer binding protein zeta protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "CBF2|CTF2" "CCAAT/enhancer binding protein (C/EBP), zeta|CCAAT/enhancer binding proteincebp* family zeta" CCAAT/enhancer binding proteins 1165 2004-02-03 2016-01-07 2016-10-05 10153 ENSG00000115816 OTTHUMG00000100960 uc002rpz.5 M37197 NM_005760 CCDS1787 Q03701 "2247079|12534345" MGI:109386 RGD:1304994 CEBPZ 612828 +HGNC:49288 CEBPZOS CEBPZ opposite strand protein-coding gene gene with protein product Approved 2p22.2 02p22.2 CEBPZ-AS1 CEBPZ antisense RNA 1 2013-10-15 2014-04-07 2014-04-07 2016-07-19 100505876 ENSG00000218739 OTTHUMG00000152162 NR_037879 CCDS82435 A8MTT3 MGI:1915804 RGD:9177508 +HGNC:1838 CECR cat eye syndrome chromosome region other region Approved 22pter-q11 22pter-q11 2001-06-22 2012-10-02 1055 +HGNC:1839 CECR1 cat eye syndrome chromosome region, candidate 1 protein-coding gene gene with protein product Approved 22q11.1 22q11.1 ADGF IDGFL Adenosine deaminase family 1302 1999-12-09 2016-10-05 51816 ENSG00000093072 OTTHUMG00000030726 uc062bga.1 AF190746 XM_006724080 "CCDS13742|CCDS13743|CCDS63395|CCDS74809" Q9NZK5 10756095 CECR1 607575 396032 +HGNC:1840 CECR2 CECR2, histone acetyl-lysine reader protein-coding gene gene with protein product Approved 22q11.1-q11.21 22q11.1-q11.21 KIAA1740 cat eye syndrome chromosome region, candidate 2 2000-01-31 2016-05-13 2016-10-11 27443 ENSG00000099954 OTTHUMG00000150072 uc010gqv.2 AF336133 NM_031413 CCDS77646 Q9BXF3 "11381032|15640247|26365797" MGI:1923799 RGD:1564182 CECR2 607576 objectId:2733 +HGNC:1841 CECR3 cat eye syndrome chromosome region, candidate 3 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.1 22q11.1 cat eye syndrome chromosome region, candidate 3 2000-01-31 2011-06-10 2016-10-05 27442 ENSG00000241832 OTTHUMG00000150063 uc021wkn.2 AF277398 NR_038398 11381032 +HGNC:1843 CECR5 cat eye syndrome chromosome region, candidate 5 protein-coding gene gene with protein product Approved 22q11.1 22q11.1 2000-01-31 2016-10-05 27440 ENSG00000069998 OTTHUMG00000150071 uc002zmh.4 AF273270 NM_017829 "CCDS13741|CCDS33595" Q9BXW7 11381032 MGI:2136976 RGD:1306557 CECR5 +HGNC:1842 CECR5-AS1 CECR5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q11.1 22q11.1 NCRNA00017 non-protein coding RNA 17 CECR4 "cat eye syndrome chromosome region, candidate 4|cat eye syndrome chromosome region, candidate 4 (non-protein coding)|CECR5 antisense RNA 1 (non-protein coding)" 2000-01-31 2011-04-28 2012-08-15 2016-10-05 100130717 ENSG00000185837 OTTHUMG00000150096 uc002zmi.5 AF307448 NR_024483 11381032 +HGNC:1844 CECR6 cat eye syndrome chromosome region, candidate 6 protein-coding gene gene with protein product Approved 22q11.1 22q11.1 2000-01-31 2016-10-05 27439 ENSG00000183307 OTTHUMG00000030471 uc002zmb.3 AF307451 NM_031890 "CCDS13740|CCDS54494" Q9BXQ6 11381032 MGI:2136977 RGD:1565302 CECR6 +HGNC:1845 CECR7 cat eye syndrome chromosome region, candidate 7 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.1 22q11.1 SAHL1 cat eye syndrome chromosome region, candidate 7 2000-01-31 2009-08-21 2016-10-05 100130418 ENSG00000237438 OTTHUMG00000150027 uc062bfn.1 BC043198 NR_015352 11381032 +HGNC:1847 CECR9 cat eye syndrome chromosome region, candidate 9 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.2 22q11.2 cat eye syndrome chromosome region, candidate 9 2000-03-22 2011-06-10 2014-11-19 30847 ENSG00000231004 OTTHUMG00000150065 uc062bgg.1 AF307449 P0C854 11381032 +HGNC:1848 CEL carboxyl ester lipase protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "BSSL|MODY8" bile salt-stimulated lipase Lipases 464 1990-12-19 2013-03-13 2016-10-05 1056 ENSG00000170835 OTTHUMG00000020855 uc010naa.3 M54994 NM_001807 CCDS43896 P19835 1676983 MGI:88374 RGD:2331 CEL 114840 119333 S09.985 objectId:2872 "3.1.1.3|3.1.1.13" +HGNC:3308 CELA1 chymotrypsin like elastase family member 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 ELA1 "elastase 1, pancreatic|chymotrypsin-like elastase family, member 1" 2001-06-22 2009-05-05 2015-11-17 2016-10-05 1990 ENSG00000139610 OTTHUMG00000167523 uc001ryi.1 NM_001971 CCDS8812 Q9UNI1 MGI:95314 RGD:2547 CELA1 130120 objectId:2338 +HGNC:24609 CELA2A chymotrypsin like elastase family member 2A protein-coding gene gene with protein product Approved 1p36.21 01p36.21 ELA2A elastase 2A chymotrypsin-like elastase family, member 2A 2009-05-05 2015-11-17 2015-11-17 63036 ENSG00000142615 OTTHUMG00000002258 uc001awk.4 NM_033440 CCDS157 P08217 "3646943|2834346" MGI:95316 RGD:2548 CELA2A 609443 S01.155 3.4.21.71 +HGNC:29995 CELA2B chymotrypsin like elastase family member 2B protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "RP11-265F14.2|ELA2B" pancreatic elastase IIB chymotrypsin-like elastase family, member 2B 2009-05-05 2015-11-17 2015-11-17 51032 ENSG00000215704 OTTHUMG00000002259 uc001awl.3 NM_015849 CCDS30605 P08218 "3646943|16327289" CELA2B 609444 +HGNC:15944 CELA3A chymotrypsin like elastase family member 3A protein-coding gene gene with protein product Approved 1p36.12 01p36.12 ELA3 protease E ELA3A "elastase 3A, pancreatic (protease E)|elastase 3A, pancreatic|chymotrypsin-like elastase family, member 3A" 2001-07-18 2009-05-05 2015-11-17 2015-11-17 10136 ENSG00000142789 OTTHUMG00000002755 uc001bfl.4 D00306 NM_005747 CCDS220 P09093 "2826474|2460440" "MGI:1915118|MGI:3651647" CELA3A S01.154 +HGNC:15945 CELA3B chymotrypsin like elastase family member 3B protein-coding gene gene with protein product Approved 1p36.12 01p36.12 CBPP "proteinase E|elastase 1|cholesterol-binding pancreatic protease|pancreatic endopeptidase E" ELA3B "elastase 3B, pancreatic|chymotrypsin-like elastase family, member 3B" 2001-07-18 2009-05-05 2015-11-17 2015-11-17 23436 ENSG00000219073 OTTHUMG00000002758 uc001bfk.4 M18692 NM_007352 CCDS219 P08861 "2826474|2460440" "MGI:1915118|MGI:3651647" RGD:1307819 CELA3B S01.205 3.4.21.70 +HGNC:2549 CELF1 CUGBP, Elav-like family member 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "CUG-BP|hNab50|BRUNOL2|NAB50|CUGBP|NAPOR|EDEN-BP" "CUG RNA-binding protein|nuclear polyadenylated RNA-binding protein, 50-kD|bruno-like 2|embryo deadenylation element binding protein" CUGBP1 "CUG triplet repeat, RNA-binding protein 1|CUG triplet repeat, RNA binding protein 1" RNA binding motif containing 725 1998-09-25 2010-02-19 2010-02-19 2016-01-15 10658 ENSG00000149187 OTTHUMG00000166526 uc001nfl.4 U63289 NM_006560 "CCDS7938|CCDS7939|CCDS31482|CCDS53622|CCDS53623|CCDS81565" Q92879 "8948631|9371827" MGI:1342295 RGD:1307721 CELF1 601074 +HGNC:2550 CELF2 CUGBP, Elav-like family member 2 protein-coding gene gene with protein product Approved 10p14 10p14 "Etr-3|NAPOR-2|BRUNOL3" CUGBP2 "CUG triplet repeat, RNA-binding protein 2|CUG triplet repeat, RNA binding protein 2" RNA binding motif containing 725 1999-12-02 2010-02-19 2010-02-19 2016-10-05 10659 ENSG00000048740 OTTHUMG00000017668 uc284mvf.1 U69546 NM_001326343 "CCDS41488|CCDS44354|CCDS44355|CCDS44356" O95319 "7869393|9887331" MGI:1338822 RGD:68347 CELF2 602538 +HGNC:23515 CELF2-AS1 CELF2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p14 10p14 "FLJ40494|Em:AC026887.2" C10orf31 "chromosome 10 open reading frame 31|CELF2 antisense RNA 1 (non-protein coding)" 2004-05-27 2012-07-12 2012-08-15 2014-11-19 414196 ENSG00000181800 OTTHUMG00000017669 uc057rqz.1 AK097813 XR_109007 Q8N7Q2 +HGNC:44703 CELF2-AS2 CELF2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 10p14 10p14 2012-12-05 2012-12-05 439950 ENSG00000237986 OTTHUMG00000017665 uc057rqs.2 NR_046108 +HGNC:11967 CELF3 CUGBP, Elav-like family member 3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "CAGH4|BRUNOL1|ERDA4|MGC57297" "expanded repeat domain, CAG/CTG 4|CAG repeat domain|CUG-BP and ETR-3 like factor 3" TNRC4 trinucleotide repeat containing 4 "RNA binding motif containing|Trinucleotide repeat containing" "725|775" 2000-01-27 2010-02-19 2010-02-19 2016-10-05 11189 ENSG00000159409 OTTHUMG00000013064 uc001eys.3 U80759 NM_007185 "CCDS1002|CCDS53367" Q5SZQ8 9225980 MGI:1926034 RGD:1563168 CELF3 612678 +HGNC:14015 CELF4 CUGBP, Elav-like family member 4 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 BRUNOL4 "Bruno (Drosophila) -like 4, RNA binding protein|bruno-like 4, RNA binding protein (Drosophila)" RNA binding motif containing 725 2000-11-28 2010-02-19 2010-02-19 2016-10-05 56853 ENSG00000101489 OTTHUMG00000178178 uc002lae.3 AF248651 NM_020180 "CCDS32818|CCDS45857|CCDS45858|CCDS45856|CCDS82250" Q9BZC1 10893231 MGI:1932407 RGD:1307630 CELF4 612679 +HGNC:14058 CELF5 CUGBP, Elav-like family member 5 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 BRUNOL5 "Bruno (Drosophila) -like 5, RNA binding protein|bruno-like 5, RNA binding protein (Drosophila)" RNA binding motif containing 725 2000-11-28 2010-02-19 2010-02-19 2016-10-05 60680 ENSG00000161082 OTTHUMG00000180693 uc002lxm.4 AF248649 NM_021938 "CCDS12106|CCDS54197" Q8N6W0 10893231 MGI:2442333 RGD:1565016 CELF5 612680 +HGNC:14059 CELF6 CUGBP, Elav-like family member 6 protein-coding gene gene with protein product Approved 15q23 15q23 BRUNOL6 "Bruno (Drosophila) -like 6, RNA binding protein|bruno-like 6, RNA binding protein (Drosophila)" RNA binding motif containing 725 2000-11-28 2010-02-19 2010-02-19 2016-10-05 60677 ENSG00000140488 OTTHUMG00000186423 uc002auh.3 AF425606 NM_052840 "CCDS10242|CCDS53955|CCDS53956" Q96J87 10893231 MGI:1923433 RGD:1310451 CELF6 612681 +HGNC:19378 CELIAC2 celiac disease 2 phenotype phenotype only Approved 5q31-q33 05q31-q33 "CD|GSE" 2003-01-30 2011-02-10 317782 "11415521|11840196" 609754 +HGNC:1849 CELP carboxyl ester lipase pseudogene pseudogene pseudogene Approved 9q34.13 09q34.13 CELL carboxyl ester lipase-like (bile salt-stimulated lipase-like) 1992-01-14 2003-03-07 2003-02-28 2016-10-05 1057 ENSG00000170827 OTTHUMG00000020857 L14813 NM_001808 1639390 CELP PGOHUM00000236782 +HGNC:1850 CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "ME2|HFMI2|FMI2|CDHF9|ADGRC1" "flamingo homolog 2 (Drosophila)|adhesion G protein-coupled receptor C1" "cadherin, EGF LAG seven-pass G-type receptor 1, flamingo (Drosophila) homolog|cadherin, EGF LAG seven-pass G-type receptor 1" "Adhesion G protein-coupled receptors, subfamily C|CELSR cadherins" "913|1189" 2000-02-14 2016-01-15 2016-01-15 9620 ENSG00000075275 OTTHUMG00000150423 uc003bhw.1 AF231024 NM_014246 CCDS14076 Q9NYQ6 9339365 MGI:1100883 RGD:1560078 CELSR1 604523 objectId:178 +HGNC:3231 CELSR2 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "KIAA0279|MEGF3|Flamingo1|CDHF10|ADGRC2" adhesion G protein-coupled receptor C2 EGFL2 "cadherin, EGF LAG seven-pass G-type receptor 2, flamingo (Drosophila) homolog|cadherin, EGF LAG seven-pass G-type receptor 2" "Adhesion G protein-coupled receptors, subfamily C|CELSR cadherins" "913|1189" 1998-03-25 2016-01-15 2016-01-15 1952 ENSG00000143126 OTTHUMG00000012003 uc001dxa.5 D87469 NM_001408 CCDS796 Q9HCU4 "9693030|10907856" MGI:1858235 RGD:69237 CELSR2 604265 objectId:179 +HGNC:3230 CELSR3 cadherin EGF LAG seven-pass G-type receptor 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "MEGF2|HFMI1|FMI1|CDHF11|ADGRC3" "flamingo homolog 1 (Drosophila)|adhesion G protein-coupled receptor C3" EGFL1 "cadherin EGF LAG seven-pass G-type receptor 3, flamingo (Drosophila) homolog|cadherin, EGF LAG seven-pass G-type receptor 3" "Adhesion G protein-coupled receptors, subfamily C|CELSR cadherins" "913|1189" 1998-03-25 2016-01-15 2016-01-15 1951 ENSG00000008300 OTTHUMG00000133544 uc003cul.4 AF231023 NM_001407 CCDS2775 Q9NYQ7 9693030 MGI:1858236 RGD:621787 CELSR3 604264 objectId:180 +HGNC:50302 CELSR3-AS1 CELSR3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 2014-04-07 2015-02-26 102724368 ENSG00000228350 OTTHUMG00000156627 BM714397 NR_111921 +HGNC:29213 CEMIP cell migration inducing hyaluronan binding protein protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "IR2155535|TMEM2L|HYBID" hyaluronan-binding protein involved in hyaluronan depolymerization KIAA1199 "KIAA1199|cell migration inducing protein, hyaluronan binding" 2004-06-29 2014-02-06 2016-04-26 2016-04-26 57214 ENSG00000103888 OTTHUMG00000144184 BC020256 NM_018689 CCDS10315 Q8WUJ3 "14577002|16157444|24573670" MGI:2443629 RGD:1305254 608366 +HGNC:32553 CEMP1 cementum protein 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 CP-23 cementum protein-23 2006-09-19 2014-11-19 752014 ENSG00000205923 OTTHUMG00000177160 uc002cqr.3 AY584596 NM_001048212 CCDS42108 Q6PRD7 16263347 CEMP1 611113 +HGNC:24153 CEND1 cell cycle exit and neuronal differentiation 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "FLJ90066|BM88" 2006-06-14 2014-11-19 51286 ENSG00000184524 OTTHUMG00000133308 uc001lrh.2 AK074547 NM_016564 CCDS7714 Q8N111 11311134 MGI:1929898 RGD:1309401 CEND1 608213 +HGNC:43674 CEND1P1 cell cycle exit and neuronal differentiation 1 pseudogene 1 pseudogene pseudogene Approved 14q32.33 14q32.33 2012-01-30 2012-01-30 122631 ENSG00000213159 OTTHUMG00000029805 NG_005601 PGOHUM00000248280 +HGNC:43675 CEND1P2 cell cycle exit and neuronal differentiation 1 pseudogene 2 pseudogene pseudogene Approved 13q12.12 13q12.12 2012-01-30 2012-01-30 724034 NG_005600 PGOHUM00000248532 +HGNC:1851 CENPA centromere protein A protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "CENP-A|CenH3" "centromere-specific histone|histone H3-like centromeric protein A" "centromere protein A (17kD)|centromere protein A, 17kDa" 1988-05-31 2006-06-16 2014-11-19 1058 ENSG00000115163 OTTHUMG00000097073 uc002rhr.4 U14518 NM_001809 "CCDS1729|CCDS42662" P49450 MGI:88375 RGD:1563607 CENPA 117139 +HGNC:1852 CENPB centromere protein B protein-coding gene gene with protein product Approved 20p13 20p13 "centromere protein B (80kD)|centromere protein B, 80kDa" Helix-turn-helix CENPB type domain containing 533 1988-05-31 2015-11-05 2015-11-05 1059 ENSG00000125817 OTTHUMG00000031761 uc002wjk.3 X05299 NM_001810 CCDS13064 P07199 "8406460|11884609" MGI:88376 RGD:1304794 CENPB 117140 +HGNC:28272 CENPBD1 CENPB DNA-binding domain containing 1 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 MGC16385 CENPB DNA-binding domains containing 1 Helix-turn-helix CENPB type domain containing 533 2009-08-26 2015-11-12 2015-11-12 92806 ENSG00000177946 OTTHUMG00000173040 uc002fpr.4 AK056131 NM_145039 CCDS45556 B2RD01 CENPBD1 +HGNC:28421 CENPBD1P1 CENPB DNA-binding domains containing 1 pseudogene 1 pseudogene pseudogene Approved 19q13.43 19q13.43 CENPBD1 pseudogene 1 2013-11-05 2015-04-07 2015-04-07 65996 ENSG00000213753 OTTHUMG00000158344 NR_026052 PGOHUM00000234828 +HGNC:1854 CENPC centromere protein C protein-coding gene gene with protein product Approved 4q13.2 04q13.2 "CENP-C|hcp-4|MIF2" CENPC1 centromere protein C 1 1998-01-16 2013-07-03 2013-07-03 2015-09-07 1060 ENSG00000145241 OTTHUMG00000160735 M95724 XM_006714064 CCDS47063 Q03188 7959789 MGI:99700 RGD:1303061 117141 +HGNC:1855 CENPCP1 centromere protein C pseudogene 1 pseudogene pseudogene Approved 12q21.33 12q21.33 "CENPC|CENPC2|CENPC1P1" "centromere protein C2, 140kDa|centromere protein C2, 140kDa pseudogene|centromere protein C 1 pseudogene 1" 1998-01-16 2013-07-03 2013-07-03 2014-11-19 1061 ENSG00000226982 OTTHUMG00000165431 NG_003044 "7959789|8406460" PGOHUM00000251024 +HGNC:1856 CENPE centromere protein E protein-coding gene gene with protein product Approved 4q24 04q24 "KIF10|PPP1R61" protein phosphatase 1, regulatory subunit 61 "centromere protein E (312kD)|centromere protein E, 312kDa" "Kinesins|Protein phosphatase 1 regulatory subunits" "622|694" 1994-07-04 2015-11-05 2016-10-05 1062 ENSG00000138778 OTTHUMG00000160980 uc003hxb.1 Z15005 XM_011531544 "CCDS34042|CCDS68768" Q02224 7851898 MGI:1098230 RGD:1307115 CENPE 117143 419081 +HGNC:1857 CENPF centromere protein F protein-coding gene gene with protein product Approved 1q41 01q41 hcp-1 mitosin "centromere protein F, 350/400kDa (mitosin)|centromere protein F, 350/400kDa" 1994-07-04 2015-11-05 2015-11-05 1063 ENSG00000117724 OTTHUMG00000036955 uc001hkm.4 U30872 NM_016343 CCDS31023 P49454 "7904902|7851898" MGI:1313302 RGD:628667 CENPF 600236 448640 +HGNC:17268 CENPH centromere protein H protein-coding gene gene with protein product Approved 5q13.2 05q13.2 2001-11-30 2016-10-05 64946 ENSG00000153044 OTTHUMG00000097816 uc003jvp.3 AB035124 NM_022909 CCDS3998 Q9H3R5 "11092768|15502821" MGI:1349448 RGD:1583506 CENPH 605607 +HGNC:3968 CENPI centromere protein I protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "LRPR1|CENP-I|Mis6" FSHPRH1 "FSH primary response (LRPR1, rat) homolog 1|FSH primary response (LRPR1 homolog, rat) 1" 1996-10-26 2006-06-15 2006-06-15 2014-11-19 2491 ENSG00000102384 OTTHUMG00000022018 uc065agi.1 X97249 NM_006733 "CCDS14479|CCDS83482" Q92674 16622420 MGI:2147897 RGD:2631 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CENPI CENPI 300065 +HGNC:39575 CENPIP1 centromere protein I pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-03-15 2011-03-15 100419337 ENSG00000224778 OTTHUMG00000016482 NG_024888 PGOHUM00000248507 +HGNC:17272 CENPJ centromere protein J protein-coding gene gene with protein product Approved 13q12.12-q12.13 13q12.12-q12.13 "CPAP|BM032|LAP|LIP1|Sas-4|SASS4|SCKL4" centrosomal P4.1-associated protein MCPH6 microcephaly, primary autosomal recessive 6 2002-02-15 2016-10-11 55835 ENSG00000151849 OTTHUMG00000016595 uc001upt.6 AF139625 NM_018451 CCDS9310 Q9HC77 "11003675|22699936" MGI:2684927 RGD:1310464 CENPJ 609279 119336 +HGNC:29479 CENPK centromere protein K protein-coding gene gene with protein product Approved 5q12.3 05q12.3 "FKSG14|SOLT|CENP-K" 2006-06-15 2014-11-19 64105 ENSG00000123219 OTTHUMG00000131227 uc003jts.4 BC008504 NM_022145 CCDS3984 Q9BS16 8950979 MGI:1926210 RGD:1310461 CENPK 611502 +HGNC:17879 CENPL centromere protein L protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "dJ383J4.3|FLJ31044" C1orf155 chromosome 1 open reading frame 155 2005-07-14 2006-06-15 2006-06-15 2014-11-19 91687 ENSG00000120334 OTTHUMG00000034802 uc001gjf.5 "BC033154|BC019022|AK055606" NM_033319 "CCDS30938|CCDS44277" Q8N0S6 "16622420|16622419" MGI:1917704 RGD:1311868 CENPL 611503 +HGNC:18352 CENPM centromere protein M protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "Pane1|CENP-M|MGC861" C22orf18 chromosome 22 open reading frame 18 Minor histocompatibility antigens 870 2002-04-03 2006-06-15 2006-06-15 2014-11-18 79019 ENSG00000100162 OTTHUMG00000151277 uc003bbn.4 BC000705 NM_024053 "CCDS14025|CCDS46719|CCDS46720|CCDS77681|CCDS77682|CCDS77683" Q9NSP4 "16622420|16622419" MGI:1913820 RGD:1307309 CENPM 610152 +HGNC:30873 CENPN centromere protein N protein-coding gene gene with protein product Approved 16q23.2 16q23.2 "FLJ13607|FLJ22660|BM039" C16orf60 chromosome 16 open reading frame 60 2006-02-20 2006-06-15 2006-06-15 2015-08-24 55839 ENSG00000166451 OTTHUMG00000137628 uc002ffx.3 AK026313 NM_018455 "CCDS10931|CCDS42199|CCDS42200|CCDS58482|CCDS58483" Q96H22 16622419 MGI:1919405 RGD:1310953 CENPN 611509 +HGNC:28152 CENPO centromere protein O protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "MGC11266|CENP-O" 2006-06-15 2014-11-19 79172 ENSG00000138092 OTTHUMG00000125525 uc061hdm.1 AK027859 NM_024322 "CCDS1714|CCDS56113" Q9BU64 "16622420|16622419" MGI:1923800 RGD:1590328 CENPO 611504 +HGNC:32933 CENPP centromere protein P protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "RP11-19J3.3|CENP-P" 2006-06-15 2014-11-18 401541 ENSG00000188312 OTTHUMG00000020228 uc004arz.5 AK091247 NM_001012267 "CCDS35063|CCDS69618" Q6IPU0 "16622419|16622420" MGI:1913586 RGD:1589530 CENPP 611505 +HGNC:21347 CENPQ centromere protein Q protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "FLJ10545|CENP-Q" C6orf139 chromosome 6 open reading frame 139 2003-06-09 2006-06-15 2006-06-15 2014-11-19 55166 ENSG00000031691 OTTHUMG00000014815 uc003ozh.2 AK001407 NM_018132 CCDS4925 Q7L2Z9 "16622420|16622419" MGI:1933744 RGD:1359451 CENPQ 611506 +HGNC:23163 CENPS centromere protein S protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "CENP-S|FAAP16" "APITD1|MHF1" "apoptosis-inducing, TAF9-like domain 1|FANCM associated histone fold protein 1" 2003-09-25 2016-09-08 2016-09-08 2016-09-08 378708 ENSG00000175279 OTTHUMG00000059085 uc001are.4 BC029430 NM_199294 "CCDS114|CCDS115" Q8N2Z9 "15328517|24522885|25038251" MGI:1917178 RGD:5128728 609130 +HGNC:25787 CENPT centromere protein T protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ13111|CENP-T" C16orf56 chromosome 16 open reading frame 56 2005-12-23 2006-06-15 2006-06-15 2014-11-19 80152 ENSG00000102901 OTTHUMG00000173071 uc002eun.4 AK056097 NM_025082 CCDS42182 Q96BT3 "16622420|16622419" MGI:2443939 RGD:1309383 CENPT 611510 +HGNC:21348 CENPU centromere protein U protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "CENP-U|KLIP1|CENP-50|PBIP1" polo-box-interacting protein 1 MLF1IP MLF1 interacting protein 2003-07-17 2013-11-05 2013-11-05 2014-11-19 79682 ENSG00000151725 OTTHUMG00000160499 "AK027121|AF516710" NM_024629 CCDS3838 Q71F23 "15116101|16622420|16622419" MGI:1919126 RGD:1562566 611511 +HGNC:49889 CENPUP1 centromere protein U pseudogene 1 pseudogene pseudogene Approved 11p15.3 11p15.3 2014-03-18 2016-10-05 100130384 ENSG00000255075 OTTHUMG00000165745 NG_021809 PGOHUM00000242599 +HGNC:49890 CENPUP2 centromere protein U pseudogene 2 pseudogene pseudogene Approved 12p12.1 12p12.1 2014-03-18 2014-03-18 100419930 ENSG00000258546 OTTHUMG00000170823 NG_023991 PGOHUM00000258618 +HGNC:29920 CENPV centromere protein V protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "p30|CENP-V" PRR6 proline rich 6 2004-11-08 2008-10-29 2008-10-29 2014-11-19 201161 ENSG00000166582 OTTHUMG00000059345 uc002gpw.4 AF514992 NM_181716 CCDS32575 Q7Z7K6 "12196509|18772885" MGI:1920389 RGD:1565681 CENPV 608139 +HGNC:31851 CENPVL1 centromere protein V like 1 other unknown Approved Xp11.22 Xp11.22 PRR6L1 proline rich 6-like 1 CENPVP1 centromere protein V pseudogene 1 2009-11-09 2016-07-19 2016-07-19 2016-07-19 389857 ENSG00000223591 OTTHUMG00000021539 uc284rbl.1 AY730278 XM_001717451 PGOHUM00000241759 +HGNC:43879 CENPVL2 centromere protein V like 2 other unknown Approved Xp11.22 Xp11.22 CENPVP2 centromere protein V pseudogene 2 2012-04-17 2016-07-19 2016-07-19 2016-07-19 441495 ENSG00000283093 OTTHUMG00000191517 NR_033773 PGOHUM00000304619 +HGNC:43880 CENPVL3 centromere protein V like 3 other unknown Approved Xp11.22 Xp11.22 CENPVP3 centromere protein V pseudogene 3 2012-04-17 2016-07-19 2016-07-19 2016-07-19 347549 ENSG00000224109 OTTHUMG00000021534 uc284rbj.1 NG_022598 PGOHUM00000241297 +HGNC:21488 CENPW centromere protein W protein-coding gene gene with protein product Approved 6q22.32 06q22.32 CUG2 cancer-upregulated gene 2 C6orf173 chromosome 6 open reading frame 173 2003-11-26 2010-04-16 2010-04-16 2015-08-24 387103 ENSG00000203760 OTTHUMG00000015518 uc003qao.5 BC039556 XM_017010845 "CCDS34529|CCDS69196|CCDS75516" Q5EE01 "17610844|19070575" MGI:1913561 RGD:1593465 CENPW 611264 +HGNC:11422 CENPX centromere protein X protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "MGC14480|FAAP10|CENP-X" "STRA13|MHF2" "stimulated by retinoic acid 13 homolog (mouse)|stimulated by retinoic acid 13|FANCM associated histone fold protein 2" 2004-02-16 2016-09-08 2016-09-08 2016-09-08 201254 ENSG00000169689 OTTHUMG00000132129 uc031rey.2 BC009571 NM_144998 "CCDS32772|CCDS59303|CCDS59302|CCDS82223" A8MT69 "24522885|25038251" MGI:894324 RGD:1590057 615128 +HGNC:28209 CEP19 centrosomal protein 19 protein-coding gene gene with protein product Approved 3q29 03q29 MGC14126 C3orf34 "chromosome 3 open reading frame 34|centrosomal protein 19kDa" 2006-01-02 2011-05-06 2016-03-30 2016-03-30 84984 ENSG00000174007 OTTHUMG00000153933 uc011btw.3 BC007827 NM_032898 CCDS43193 Q96LK0 21399614 MGI:1914244 RGD:621352 CEP19 615586 400633 +HGNC:12370 CEP41 centrosomal protein 41 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 "DKFZp762H1311|FLJ22445|JBTS15" TSGA14 "testis specific, 14|centrosomal protein 41kDa" 2000-08-24 2011-10-04 2016-03-30 2016-10-05 95681 ENSG00000106477 OTTHUMG00000157823 uc003vpz.5 AJ278890 NM_018718 "CCDS5821|CCDS59078|CCDS59079|CCDS59080" Q9BYV8 "14654843|22246503" MGI:1891414 RGD:1562034 CEP41 610523 292992 +HGNC:29356 CEP44 centrosomal protein 44 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 KIAA1712 "KIAA1712|centrosomal protein 44kDa" 2004-01-30 2011-05-06 2016-03-30 2016-10-05 80817 ENSG00000164118 OTTHUMG00000160752 uc063bbf.1 AB051499 NM_030633 "CCDS34106|CCDS47163" Q9C0F1 21399614 MGI:3525111 RGD:1308517 CEP44 +HGNC:1161 CEP55 centrosomal protein 55 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "FLJ10540|CT111" cancer/testis antigen 111 C10orf3 "chromosome 10 open reading frame 3|centrosomal protein 55kDa" 2000-08-24 2005-12-01 2016-03-30 2016-10-05 55165 ENSG00000138180 OTTHUMG00000018774 uc001kiq.4 AK001402 NM_018131 CCDS7428 Q53EZ4 16198290 MGI:1921357 RGD:1305340 CEP55 610000 +HGNC:30794 CEP57 centrosomal protein 57 protein-coding gene gene with protein product Approved 11q21 11q21 "Translokin|TSP57|KIAA0092" centrosomal protein 57kDa 2005-12-02 2016-03-30 2016-10-12 9702 ENSG00000166037 OTTHUMG00000167740 uc001pfp.2 D42054 NM_014679 "CCDS8304|CCDS58166|CCDS58167" Q86XR8 7788527 MGI:1915551 RGD:1309884 LRG_526|http://www.lrg-sequence.org/LRG/LRG_526 CEP57 607951 270019 +HGNC:21561 CEP57L1 centrosomal protein 57 like 1 protein-coding gene gene with protein product Approved 6q21 06q21 "bA487F23.2|MGC21731" C6orf182 "chromosome 6 open reading frame 182|centrosomal protein 57kDa-like 1" 2003-06-24 2010-09-30 2016-03-30 2016-03-30 285753 ENSG00000183137 OTTHUMG00000015336 uc063qnc.1 AK092723 NM_173830 "CCDS5071|CCDS64491" Q8IYX8 MGI:1915511 RGD:1311358 CEP57L1 +HGNC:23521 CEP57L1P1 centrosomal protein 57 like 1 pseudogene 1 pseudogene pseudogene Approved 10q22.1 10q22.1 "C10orf37|C6orf182P" "chromosome 10 open reading frame 37|chromosome 6 open reading frame 182 pseudogene|centrosomal protein 57kDa-like 1 pseudogene 1" 2004-05-27 2010-09-30 2016-03-30 2016-10-05 221017 ENSG00000224725 OTTHUMG00000018406 NG_005976 PGOHUM00000256660 +HGNC:25815 CEP63 centrosomal protein 63 protein-coding gene gene with protein product Approved 3q22.2 03q22.2 FLJ13386 centrosomal protein 63kDa 2005-12-01 2016-03-30 2016-10-05 80254 ENSG00000182923 OTTHUMG00000159725 uc003eqo.2 AK056465 NM_025180 "CCDS3086|CCDS43152|CCDS43153|CCDS43154" Q96MT8 "14654843|24240477" MGI:2158560 RGD:1561183 CEP63 614724 292102 +HGNC:29076 CEP68 centrosomal protein 68 protein-coding gene gene with protein product Approved 2p14 02p14 KIAA0582 "KIAA0582|centrosomal protein 68kDa" 2004-03-29 2005-12-01 2016-03-30 2016-03-30 23177 ENSG00000011523 OTTHUMG00000129538 uc002sdl.5 BC004873 NM_015147 "CCDS1880|CCDS82457" Q76N32 "9628581|9847074|14654843" MGI:2667663 RGD:1309101 CEP68 616889 +HGNC:29972 CEP70 centrosomal protein 70 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "BITE|FLJ13036" centrosomal protein 70kDa 2005-12-01 2016-03-30 2016-03-30 80321 ENSG00000114107 OTTHUMG00000159891 uc003esl.5 AF202146 NM_024491 "CCDS3102|CCDS75022|CCDS75023|CCDS75024|CCDS82842" Q8NHQ1 14654843 MGI:1915371 RGD:1561486 CEP70 614310 +HGNC:25547 CEP72 centrosomal protein 72 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "KIAA1519|FLJ10565" centrosomal protein 72kDa 2005-12-01 2016-03-30 2016-03-30 55722 ENSG00000112877 OTTHUMG00000161745 uc003jbf.4 BC000132 NM_018140 CCDS34126 Q9P209 10819331 MGI:1921720 RGD:1566336 CEP72 616475 +HGNC:25727 CEP76 centrosomal protein 76 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "HsT1705|FLJ12542" C18orf9 "chromosome 18 open reading frame 9|centrosomal protein 76kDa" 2004-01-04 2005-12-01 2016-03-30 2016-03-30 79959 ENSG00000101624 OTTHUMG00000131701 uc002kri.5 BC026307 NM_024899 "CCDS11861|CCDS62390" Q8TAP6 14654843 MGI:1923401 RGD:1305183 CEP76 +HGNC:25740 CEP78 centrosomal protein 78 protein-coding gene gene with protein product Approved 9q21.2 09q21.2 FLJ12643 C9orf81 "chromosome 9 open reading frame 81|centrosomal protein 78kDa" 2004-01-29 2005-12-01 2016-03-30 2016-03-30 84131 ENSG00000148019 OTTHUMG00000020062 uc004aky.5 BC058931 XM_095991 "CCDS47984|CCDS47985|CCDS83376|CCDS83377|CCDS83378" Q5JTW2 14654843 MGI:1924386 RGD:620464 CEP78 617110 +HGNC:17966 CEP83 centrosomal protein 83 protein-coding gene gene with protein product Approved 12q22 12q22 "NY-REN-58|NPHP18" CCDC41 "coiled-coil domain containing 41|centrosomal protein 83kDa" 2005-12-14 2014-03-06 2016-03-30 2016-03-30 51134 ENSG00000173588 AF155115 NM_016122 CCDS41820 Q9Y592 "10508479|23348840" MGI:1924298 RGD:1359593 615847 404809 +HGNC:27055 CEP83-AS1 CEP83 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 12q22 12q22 CCDC41-AS1 CCDC41 antisense RNA 1 (head to head) 2013-05-30 2014-03-06 2014-03-06 2014-03-06 144486 ENSG00000278916 OTTHUMG00000170256 NR_027035 12477932 +HGNC:25309 CEP85 centrosomal protein 85 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 DKFZP434L0117 CCDC21 "coiled-coil domain containing 21|centrosomal protein 85kDa" 2005-07-21 2011-05-06 2016-03-30 2016-03-30 64793 ENSG00000130695 OTTHUMG00000003380 uc001bls.3 AK024038 NM_022778 "CCDS277|CCDS60038|CCDS81285" Q6P2H3 12477932 MGI:1917262 RGD:1311520 CEP85 +HGNC:21638 CEP85L centrosomal protein 85 like protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "NY-BR-15|bA57K17.2" C6orf204 "chromosome 6 open reading frame 204|centrosomal protein 85kDa-like" 2003-11-26 2011-11-25 2016-03-30 2016-03-30 387119 ENSG00000111860 OTTHUMG00000015465 uc003pyb.5 AF308284 NM_001042475 "CCDS5119|CCDS43498|CCDS55052" Q5SZL2 MGI:3642684 RGD:2319745 CEP85L +HGNC:25907 CEP89 centrosomal protein 89 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 FLJ14640 CCDC123 "coiled-coil domain containing 123|centrosomal protein 89kDa" 2006-08-08 2011-05-06 2016-03-30 2016-07-25 84902 ENSG00000121289 OTTHUMG00000180424 uc002nty.4 AL832158 NM_032816 CCDS32987 Q96ST8 16395595 MGI:1919390 RGD:1311730 CEP89 615470 +HGNC:25141 CEP95 centrosomal protein 95 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 DKFZp667E1824 CCDC45 "coiled-coil domain containing 45|centrosomal protein 95kDa" 2005-12-16 2011-05-06 2016-03-30 2016-10-05 90799 ENSG00000258890 OTTHUMG00000179174 uc002jem.4 AL832822 NM_138363 CCDS45763 Q96GE4 21399614 MGI:2443502 RGD:1309655 CEP95 +HGNC:26244 CEP97 centrosomal protein 97 protein-coding gene gene with protein product Approved 3q12.3 03q12.3 FLJ23047 LRRIQ2 "leucine-rich repeats and IQ motif containing 2|centrosomal protein 97kDa" 2004-09-01 2008-01-08 2016-03-30 2016-03-30 79598 ENSG00000182504 OTTHUMG00000159162 uc003dvk.2 AL833269 NM_024548 "CCDS2944|CCDS77780" Q8IW35 "17719545|18068367" MGI:1921451 RGD:1307400 CEP97 615864 +HGNC:24866 CEP104 centrosomal protein 104 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "GlyBP|RP1-286D6.4|CFAP256|ROC22|JBTS25" glycine, glutamate, thienylcyclohexylpiperidine binding protein KIAA0562 "KIAA0562|centrosomal protein 104kDa" 2006-03-20 2011-05-06 2016-03-30 2016-03-30 9731 ENSG00000116198 OTTHUMG00000003507 uc001aky.3 AB011134 NM_014704 CCDS30571 O60308 "7488117|21399614|23970417" MGI:2687282 RGD:708505 CEP104 616690 448865 +HGNC:28514 CEP112 centrosomal protein 112 protein-coding gene gene with protein product Approved 17q24.1 17q24.1 MGC33887 CCDC46 "coiled-coil domain containing 46|centrosomal protein 112kDa" 2005-12-19 2011-05-06 2016-03-30 2016-10-05 201134 ENSG00000154240 OTTHUMG00000179474 uc002jfm.4 AF458591 NM_145036 "CCDS32710|CCDS32711|CCDS77093" Q8N8E3 21399614 MGI:1923673 RGD:1564168 CEP112 +HGNC:26690 CEP120 centrosomal protein 120 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 FLJ36090 CCDC100 "coiled-coil domain containing 100|centrosomal protein 120kDa" 2006-04-03 2008-08-14 2016-03-30 2016-03-30 153241 ENSG00000168944 OTTHUMG00000128922 uc003ktk.4 AK095646 NM_153223 "CCDS4134|CCDS54890" Q8N960 17920017 MGI:2147298 RGD:1565619 CEP120 613446 422916 +HGNC:29264 CEP126 centrosomal protein 126 protein-coding gene gene with protein product Approved 11q22.1 11q22.1 KIAA1377 "KIAA1377|centrosomal protein 126kDa" 2006-02-03 2015-03-12 2016-03-30 2016-10-05 57562 ENSG00000110318 OTTHUMG00000167319 AK095004 NM_020802 CCDS31658 Q9P2H0 "22712476|24867236" MGI:2680221 RGD:1563556 614634 306100 +HGNC:20359 CEP128 centrosomal protein 128 protein-coding gene gene with protein product Approved 14q31.1 14q31.1 "C14orf61|C14orf145" "chromosome 14 open reading frame 61|chromosome 14 open reading frame 145|centrosomal protein 128kDa" 2003-01-28 2011-05-06 2016-03-30 2016-03-30 145508 ENSG00000100629 uc059dxn.1 AK056756 NM_152446 CCDS32130 Q6ZU80 21399614 MGI:1922466 RGD:1595693 CEP128 +HGNC:29511 CEP131 centrosomal protein 131 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "AZ1|KIAA1118" AZI1 "5-azacytidine induced 1|centrosomal protein 131kDa" 2004-07-15 2014-03-06 2016-03-30 2016-03-30 22994 ENSG00000141577 OTTHUMG00000132728 AB029041 NM_014984 "CCDS32764|CCDS45808|CCDS82214|CCDS82215" Q9UPN4 "10470851|9070930|14654843" MGI:107440 RGD:1307745 613479 +HGNC:29086 CEP135 centrosomal protein 135 protein-coding gene gene with protein product Approved 4q12 04q12 FLJ13621 "KIAA0635|CEP4" "KIAA0635|centrosomal protein 4|centrosomal protein 135kDa" 2004-01-28 2005-12-02 2016-03-30 2016-03-30 9662 ENSG00000174799 OTTHUMG00000160748 uc003hbi.5 AB014535 NM_025009 CCDS33986 Q66GS9 "9734811|14654843" MGI:2681869 RGD:1310726 CEP135 611423 295279 +HGNC:29298 CEP152 centrosomal protein 152 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "KIAA0912|SCKL5|MCPH9" asterless centrosomal protein 152kDa 2005-12-01 2016-03-30 2016-05-13 22995 ENSG00000103995 OTTHUMG00000172219 uc001zwy.4 AB020719 NM_014985 "CCDS42033|CCDS58361" O94986 "14654843|21131973" MGI:2139083 RGD:1305348 CEP152 613529 240669 +HGNC:21107 CEP162 centrosomal protein 162 protein-coding gene gene with protein product Approved 6q14.2-q14.3 06q14.2-q14.3 QN1 "C6orf84|KIAA1009" "chromosome 6 open reading frame 84|KIAA1009|centrosomal protein 162kDa" 2003-05-20 2014-03-06 2016-03-30 2016-10-11 22832 ENSG00000135315 OTTHUMG00000015123 AB023226 NM_014895 "CCDS34494|CCDS69149" Q5TB80 23644468 MGI:1925343 RGD:1307365 610201 +HGNC:29182 CEP164 centrosomal protein 164 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "KIAA1052|NPHP15" centrosomal protein 164kDa 2005-12-01 2016-03-30 2016-03-30 22897 ENSG00000110274 OTTHUMG00000167070 uc001prc.4 AB028975 NM_014956 CCDS31683 Q9UPV0 "10470851|14654843" MGI:2384878 RGD:1561243 CEP164 614848 313834 +HGNC:44988 CEP164P1 centrosomal protein 164 pseudogene 1 pseudogene pseudogene Approved 10q11.21 10q11.21 centrosomal protein 164kDa pseudogene 1 2013-01-03 2016-03-30 2016-03-30 100289237 ENSG00000226937 OTTHUMG00000018069 NG_032712 PGOHUM00000238442 +HGNC:28920 CEP170 centrosomal protein 170 protein-coding gene gene with protein product Approved 1q43 01q43 "KAB|FAM68A" "KARP 1 binding protein|XRCC5 binding protein" KIAA0470 "KIAA0470|centrosomal protein 170kDa" 2005-05-16 2006-01-12 2016-03-30 2016-10-05 9859 ENSG00000143702 OTTHUMG00000039862 uc057qug.1 AB022657 NM_014812 "CCDS44337|CCDS44338|CCDS44339" Q5SW79 15616186 MGI:1918348 RGD:621868 CEP170 613023 +HGNC:20362 CEP170B centrosomal protein 170B protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "FAM68C|Cep170R" Cep170-related KIAA0284 KIAA0284 2003-11-21 2012-11-30 2012-11-30 2016-04-25 283638 ENSG00000099814 OTTHUMG00000170763 uc010axb.4 AB006622 NM_001112726 "CCDS45175|CCDS45176" Q9Y4F5 23087211 MGI:2145043 RGD:1595689 +HGNC:28364 CEP170P1 centrosomal protein 170 pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 "MGC26143|FAM68B" "KIAA0470L|CEP170L" "KIAA0470-like|centrosomal protein 170kDa-like|centrosomal protein 170kDa pseudogene 1" 2005-05-16 2010-10-11 2016-03-30 2016-03-30 645455 ENSG00000154608 OTTHUMG00000132958 BC014590 NR_003135.2 Q96L14 PGOHUM00000250791 +HGNC:25515 CEP192 centrosomal protein 192 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "KIAA1569|FLJ10352|PPP1R62" protein phosphatase 1, regulatory subunit 62 centrosomal protein 192kDa Protein phosphatase 1 regulatory subunits 694 2005-12-01 2016-03-30 2016-04-25 55125 ENSG00000101639 OTTHUMG00000160693 uc060npo.1 AK074074 NM_032142 CCDS32792 Q8TEP8 "11230166|14654843" MGI:1918049 RGD:1562797 CEP192 616426 +HGNC:1859 CEP250 centrosomal protein 250 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 C-NAP1 CEP2 "centrosomal protein 2|centrosomal protein 250kDa" 2000-06-08 2006-01-11 2016-03-30 2016-03-30 11190 ENSG00000126001 OTTHUMG00000032343 uc032pib.2 AF022655 NM_007186 CCDS13255 Q9BV73 "9506584|9647649" MGI:108084 RGD:1562262 CEP250 609689 +HGNC:29021 CEP290 centrosomal protein 290 protein-coding gene gene with protein product Approved 12q21.32 12q21.32 "KIAA0373|FLJ13615|3H11Ag|rd16|NPHP6|JBTS5|SLSN6|LCA10|MKS4|BBS14|CT87|POC3" "Joubert syndrome 5|nephrocystin-6|cancer/testis antigen 87|POC3 centriolar protein homolog (Chlamydomonas)|Meckel syndrome, type 4|Bardet-Biedl syndrome 14" centrosomal protein 290kDa Bardet-Biedl syndrome associated 980 2006-02-20 2016-03-30 2016-10-12 80184 ENSG00000198707 OTTHUMG00000169871 uc001tar.4 AB002371 NM_025114 CCDS55858 O15078 "15474516|16682973|16632484" MGI:2384917 RGD:1311640 LRG_694|http://www.lrg-sequence.org/LRG/LRG_694 CEP290 610142 119343 +HGNC:29366 CEP295 centrosomal protein 295 protein-coding gene gene with protein product Approved 11q21 11q21 KIAA1731 "KIAA1731|centrosomal protein 295kDa" 2005-09-29 2014-09-25 2016-03-30 2016-03-30 85459 ENSG00000166004 OTTHUMG00000167449 AB051518 NM_033395 CCDS44708 Q9C0D2 "20844083|25131205" MGI:2442521 RGD:1311723 +HGNC:44659 CEP295NL CEP295 N-terminal like protein-coding gene gene with protein product Approved 17q25.3 17q25.3 DDC8 KIAA1731NL KIAA1731 N-terminal like 2014-07-30 2015-03-12 2015-03-12 2015-09-07 100653515 ENSG00000178404 OTTHUMG00000177628 NM_001243540 CCDS58603 Q96MC4 MGI:1929713 RGD:1597046 +HGNC:24238 CEP350 centrosomal protein 350 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "KIAA0480|CAP350" centrosome associated protein 350 centrosomal protein 350kDa 2006-02-15 2016-03-30 2016-03-30 9857 ENSG00000135837 OTTHUMG00000035269 uc001gnt.4 AF287356 NM_014810 CCDS1336 Q5VT06 "16314388|15615782" MGI:1921331 RGD:621162 CEP350 +HGNC:1860 CEPA congenital episodic primary apnea phenotype phenotype only Approved reserved reserved 1995-06-09 2011-02-24 +HGNC:1861 CEPO entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:24289 CEPT1 choline/ethanolamine phosphotransferase 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 2004-11-16 2016-10-05 10390 ENSG00000134255 OTTHUMG00000012357 uc001eah.1 AF068302 NM_006090 CCDS830 Q9Y6K0 "10191259|12216837" MGI:2139793 RGD:1359727 CEPT1 616751 "2.7.8.1|2.7.8.2" +HGNC:1862 CER1 cerberus 1, DAN family BMP antagonist protein-coding gene gene with protein product Approved 9p22.3 09p22.3 DAND4 "cerberus 1 (Xenopus laevis) homolog (cysteine knot superfamily)|cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis)" DAN family 1246 1998-09-25 2013-02-26 2016-10-05 9350 ENSG00000147869 OTTHUMG00000021022 uc003zlj.4 AF090189 NM_005454 CCDS6476 O95813 10049596 MGI:1201414 RGD:1563046 CER1 603777 +HGNC:23723 CERCAM cerebral endothelial cell adhesion molecule protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "GLT25D3|CerCAM" glycosyltransferase 25 domain containing 3 CEECAM1 cerebral cell adhesion molecule 2003-12-04 2007-10-17 2007-10-17 2016-10-05 51148 ENSG00000167123 OTTHUMG00000020747 uc004buz.5 AB040935 NM_016174 "CCDS6901|CCDS69675" Q5T4B2 10608765 MGI:2139134 RGD:1304778 CERCAM 616626 +HGNC:19256 CERK ceramide kinase protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "hCERK|FLJ23239|dA59H18.3|DKFZp434E0211|FLJ21430|KIAA1646|LK4|dA59H18.2" 2002-10-09 2015-12-04 64781 ENSG00000100422 OTTHUMG00000150395 uc003bia.4 AB079066 NM_022766 CCDS14077 Q8TCT0 "11956206|11258795" MGI:2386052 RGD:1305019 CERK 610307 objectId:2473 2.7.1.138 +HGNC:21699 CERKL ceramide kinase like protein-coding gene gene with protein product Approved 2q31.3 02q31.3 RP26 "retinitis pigmentosa 26 (autosomal recessive)|ceramide kinase-like" 2004-11-26 2015-11-12 2015-11-12 375298 ENSG00000188452 OTTHUMG00000154315 uc010zfm.3 BC020465 NR_027689 "CCDS33340|CCDS33341|CCDS42789|CCDS46466|CCDS54425" Q49MI3 14681825 MGI:3037816 RGD:1561057 CERKL 608381 119354 +HGNC:14253 CERS1 ceramide synthase 1 protein-coding gene gene with protein product Approved 19p12 19p12 "LAG1|UOG1" LASS1 "longevity assurance (LAG1, S. cerevisiae) homolog 1|LAG1 longevity assurance homolog 1 (S. cerevisiae)|LAG1 homolog, ceramide synthase 1" CERS class homeoboxes 530 2000-12-14 2011-07-08 2011-07-08 2015-09-07 10715 ENSG00000223802 OTTHUMG00000183049 uc060vul.1 AF105005 NM_198207 "CCDS46021|CCDS46020|CCDS77267" P27544 "9872981|2034669" MGI:2136690 RGD:1305974 CERS1 606919 431615 objectId:2474 +HGNC:14076 CERS2 ceramide synthase 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "SP260|FLJ10243" LASS2 "longevity assurance (LAG1, S. cerevisiae) homolog 2|LAG1 longevity assurance homolog 2 (S. cerevisiae)|LAG1 homolog, ceramide synthase 2" CERS class homeoboxes 530 2001-09-10 2011-07-08 2011-07-08 2015-08-24 29956 ENSG00000143418 OTTHUMG00000035064 uc001evz.4 AF189062 NM_022075 CCDS973 Q96G23 11543633 MGI:1924143 RGD:1310059 606920 8573 objectId:2475 +HGNC:23752 CERS3 ceramide synthase 3 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 MGC27091 LASS3 "LAG1 longevity assurance homolog 3 (S. cerevisiae)|LAG1 homolog, ceramide synthase 3" CERS class homeoboxes 530 2003-12-11 2011-07-08 2011-07-08 2015-08-24 204219 ENSG00000154227 OTTHUMG00000172568 uc002bwb.3 NM_178842 CCDS10384 Q8IU89 MGI:2681008 RGD:1564356 615276 8573 364399 objectId:2476 +HGNC:51431 CERS3-AS1 CERS3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q26.3 15q26.3 2014-11-26 2014-11-26 102723320 ENSG00000259430 OTTHUMG00000172308 "AL708976|AI160488" NR_120374 +HGNC:23747 CERS4 ceramide synthase 4 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "FLJ12089|Trh1" LASS4 "LAG1 longevity assurance homolog 4 (S. cerevisiae)|LAG1 homolog, ceramide synthase 4" CERS class homeoboxes 530 2003-12-11 2011-07-08 2011-07-08 2014-11-19 79603 ENSG00000090661 OTTHUMG00000172570 uc002mjg.4 NM_024552 CCDS12197 Q9HA82 MGI:1914510 RGD:1309303 615334 8573 objectId:2477 +HGNC:23749 CERS5 ceramide synthase 5 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "Trh4|MGC45411|FLJ25304" LASS5 "LAG1 longevity assurance homolog 5 (S. cerevisiae)|LAG1 homolog, ceramide synthase 5" CERS class homeoboxes 530 2003-12-11 2011-07-08 2011-07-08 2015-08-27 91012 ENSG00000139624 OTTHUMG00000169819 uc001rwd.6 NM_147190 "CCDS8801|CCDS61120" Q8N5B7 MGI:1919199 RGD:1311597 615335 8573 objectId:2478 +HGNC:23826 CERS6 ceramide synthase 6 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 LASS6 "LAG1 longevity assurance homolog 6 (S. cerevisiae)|LAG1 homolog, ceramide synthase 6" CERS class homeoboxes 530 2004-04-30 2011-07-08 2011-07-08 2016-10-05 253782 ENSG00000172292 OTTHUMG00000132183 uc002ueb.3 BX393696 NM_203463 "CCDS2228|CCDS58734" Q6ZMG9 MGI:2442564 RGD:1561599 615336 8573 objectId:2479 +HGNC:44485 CERS6-AS1 CERS6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q24.3 02q24.3 2012-11-08 2012-11-08 100861402 ENSG00000227617 OTTHUMG00000153980 uc061pgi.1 NR_045786 +HGNC:1863 CES1 carboxylesterase 1 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 "HMSE|CES2|HMSE1|SES1|CEH|CES1A1|CES1A2" human monocyte/macrophage serine esterase 1 carboxylesterase 1 (monocyte/macrophage serine esterase 1) Carboxylesterases 461 1991-08-07 2010-10-12 2016-10-05 1066 ENSG00000198848 OTTHUMG00000176718 uc002eil.4 BC012418 NM_001266 "CCDS32450|CCDS45488|CCDS45489" P23141 "2070086|20931200" "MGI:1922954|MGI:2142687|MGI:2148202|MGI:3648919|MGI:3779470|MGI:88378|MGI:95420|MGI:95432" RGD:70896 CES1 114835 S09.982 objectId:2592 3.1.1.1 +HGNC:18546 CES1P1 carboxylesterase 1 pseudogene 1 pseudogene pseudogene Approved 16q12.2 16q12.2 "PCE-3|CESR|CES1A3" CES4 "carboxylesterase 4-like|carboxylesterase 4, pseudogene" 2004-02-20 2010-10-12 2010-10-12 2013-07-10 51716 ENSG00000228695 OTTHUMG00000154668 AF106005 NR_003276 Q9UKY3 "10452915|20931200" PGOHUM00000250685 S09.986 +HGNC:48928 CES1P2 carboxylesterase 1 pseudogene 2 pseudogene pseudogene Approved 16q12.2 16q12.2 2013-07-10 2013-07-10 390732 ENSG00000260765 OTTHUMG00000176717 NR_033740 PGOHUM00000250684 +HGNC:1864 CES2 carboxylesterase 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "CE-2|iCE|CES2A1" carboxylesterase 2 (intestine, liver) Carboxylesterases 461 1993-09-30 2010-10-12 2015-09-07 8824 ENSG00000172831 OTTHUMG00000137517 uc002eqr.4 BC032095 NM_003869 "CCDS10825|CCDS45507" O00748 "9169443|9144407|20931200" "MGI:1919153|MGI:1919611|MGI:2142491|MGI:2385905|MGI:2443170|MGI:2448547|MGI:3648740" RGD:1560889 CES2 605278 S09.984 +HGNC:1865 CES3 carboxylesterase 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ21736|ES31" "esterase 31|brain carboxylesterase BR3" carboxylesterase 3 (brain) Carboxylesterases 461 1999-12-14 2008-07-25 2014-11-19 23491 ENSG00000172828 OTTHUMG00000137525 uc002eqt.4 AK025389 NM_024922 "CCDS10826|CCDS54022|CCDS54023" Q6UWW8 "10518925|14581373|15100172|20931200" "MGI:102773|MGI:3644960" RGD:1588734 CES3 605279 +HGNC:26741 CES4A carboxylesterase 4A protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ37464 CES8 carboxylesterase 8 (putative) Carboxylesterases 461 2009-01-27 2010-10-12 2010-10-12 2016-04-25 283848 ENSG00000172824 uc010vix.3 AK094783 NM_173815 "CCDS42174|CCDS54024|CCDS54025" Q5XG92 "12975309|17364878|20931200" MGI:2384581 RGD:1307418 CES4A +HGNC:26459 CES5A carboxylesterase 5A protein-coding gene gene with protein product Approved 16q12.2 16q12.2 "FLJ31547|CES4C1|CES5|CAUXIN" CES7 carboxylesterase 7 Carboxylesterases 461 2005-10-06 2010-10-12 2010-10-12 2016-10-05 221223 ENSG00000159398 OTTHUMG00000133236 uc002eip.3 AK090997 NM_145024 "CCDS10755|CCDS45490|CCDS54012" Q6NT32 20931200 MGI:1915185 RGD:1549717 CES5A S09.960 3.1.1.1 +HGNC:38516 CES5AP1 carboxylesterase 5A pseudogene 1 pseudogene pseudogene Approved 22q11.23 22q11.23 2010-10-12 2014-11-19 649264 ENSG00000215478 OTTHUMG00000150651 NR_037839 PGOHUM00000246278 +HGNC:1866 CETN1 centrin 1 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 CEN1 CETN centrin, EF-hand protein, 1 EF-hand domain containing 863 1996-10-30 2015-11-13 2015-11-13 1068 ENSG00000177143 OTTHUMG00000131471 uc002kko.2 U03270 NM_004066 CCDS11820 Q12798 8175926 MGI:1347086 RGD:620246 CETN1 603187 +HGNC:1867 CETN2 centrin 2 protein-coding gene gene with protein product Approved Xq28 Xq28 CEN2 CALT centrin, EF-hand protein, 2 "EF-hand domain containing|Nucleotide excision repair|Transcription and export complex 2" "863|1269|1276" 1997-03-21 2015-11-13 2015-11-13 1069 ENSG00000147400 OTTHUMG00000024246 uc004fgq.4 X72964 NM_004344 CCDS14716 P41208 "7713520|8597638" MGI:1347085 RGD:620247 CETN2 300006 +HGNC:1868 CETN3 centrin 3 protein-coding gene gene with protein product Approved 5q14.3 05q14.3 CEN3 "CDC31 yeast homolog|EF-hand superfamily member" "centrin, EF-hand protein, 3 (CDC31 yeast homolog)|centrin, EF-hand protein, 3" EF-hand domain containing 863 1997-08-22 2015-11-13 2015-11-13 1070 ENSG00000153140 OTTHUMG00000131326 uc003kjo.4 Y12473 NM_004365 "CCDS4066|CCDS75274|CCDS78036" O15182 9256449 MGI:1097706 RGD:620249 CETN3 602907 +HGNC:35450 CETN4P centrin 4, pseudogene pseudogene pseudogene Approved 4q27 04q27 centrin EF-hand protein 4, pseudogene 2010-03-12 2015-11-13 2015-11-13 729338 ENSG00000224786 OTTHUMG00000150126 NR_024041 MGI:2677454 PGOHUM00000245685 +HGNC:1869 CETP cholesteryl ester transfer protein protein-coding gene gene with protein product Approved 16q13 16q13 BPIFF BPI fold containing family F cholesteryl ester transfer protein, plasma BPI fold containing 456 2001-06-22 2016-03-17 2016-03-17 1071 ENSG00000087237 OTTHUMG00000133279 uc002eki.3 M30185 NM_000078 "CCDS10772|CCDS67032" P11597 "3600759|2334701" CETP 118470 119357 +HGNC:29523 CFAP20 cilia and flagella associated protein 20 protein-coding gene gene with protein product Approved 16q21 16q21 "GTL3|fSAP23" "functional spliceosome-associated protein 23|flagellar associated protein 20 homolog (Chlamydomonas)" C16orf80 chromosome 16 open reading frame 80 2006-08-22 2014-07-03 2014-07-03 2014-11-19 29105 ENSG00000070761 OTTHUMG00000133490 BC005152 NM_013242 CCDS10793 Q9Y6A4 8688464 MGI:107428 RGD:1308493 +HGNC:30540 CFAP36 cilia and flagella associated protein 36 protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "MGC15407|BARTL1" CCDC104 coiled-coil domain containing 104 2006-05-02 2014-08-13 2014-08-13 2016-05-17 112942 ENSG00000163001 OTTHUMG00000129339 BC010011 NM_080667 "CCDS1854|CCDS62911" Q96G28 "19680650|26455799" MGI:1913994 RGD:1311732 +HGNC:26684 CFAP43 cilia and flagella associated protein 43 protein-coding gene gene with protein product Approved 10q25.1 10q25.1 "FLJ36006|bA373N18.2|FLJ22944" "C10orf79|WDR96" "chromosome 10 open reading frame 79|WD repeat domain 96" WD repeat domain containing 362 2004-04-23 2014-07-18 2014-07-18 2015-08-24 80217 ENSG00000197748 OTTHUMG00000019002 AL833836 NM_025145 CCDS31281 Q8NDM7 14702039 MGI:1289258 RGD:1560545 +HGNC:25631 CFAP44 cilia and flagella associated protein 44 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 FLJ11142 WDR52 WD repeat domain 52 WD repeat domain containing 362 2005-02-01 2014-07-18 2014-07-18 2015-08-24 55779 ENSG00000206530 OTTHUMG00000159259 AK002004 NM_018338 "CCDS2972|CCDS54624" Q96MT7 12477932 MGI:1277238 RGD:1559942 +HGNC:41113 CFAP44-AS1 CFAP44 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.2 03q13.2 WDR52-AS1 "WDR52 antisense RNA 1 (non-protein coding)|WDR52 antisense RNA 1" 2011-07-25 2014-07-18 2014-07-18 2014-11-18 100874029 ENSG00000243849 OTTHUMG00000159300 NR_046728 +HGNC:17229 CFAP45 cilia and flagella associated protein 45 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 NESG1 CCDC19 coiled-coil domain containing 19 2005-07-07 2014-08-13 2014-08-13 2014-11-19 25790 ENSG00000213085 OTTHUMG00000035432 AF094758 NM_012337 CCDS30914 Q9UL16 "10524255|20715168" MGI:1919120 RGD:1561559 605152 +HGNC:25247 CFAP46 cilia and flagella associated protein 46 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "DKFZp434A1721|bA288G11.4|bA288G11.5|bB137A17.2|FLJ25954|bB137A17.3" "C10orf123|C10orf124|C10orf93|C10orf92|TTC40" "chromosome 10 open reading frame 123|chromosome 10 open reading frame 124|chromosome 10 open reading frame 93|chromosome 10 open reading frame 92|tetratricopeptide repeat domain 40" Tetratricopeptide repeat domain containing 769 2004-03-16 2014-07-18 2014-07-18 2015-09-07 54777 ENSG00000171811 OTTHUMG00000019292 BC034223 NM_001200049 CCDS58101 Q8IYW2 11230166 MGI:2444387 RGD:1559985 +HGNC:26708 CFAP47 cilia and flagella associated protein 47 protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 "FLJ36601|RP13-11B7.1|MGC34831" "CXorf59|CXorf22|CXorf30|CHDC2" "chromosome X open reading frame 59|chromosome X open reading frame 22|chromosome X open reading frame 30|calponin homology domain containing 2" 2006-07-11 2015-02-03 2015-02-03 2015-07-31 286464 ENSG00000165164 OTTHUMG00000021351 AK093920 NM_001304548 CCDS83464 Q6ZTR5 MGI:3781475 RGD:1587070 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf59 +HGNC:16053 CFAP52 cilia and flagella associated protein 52 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "WDRPUH|FLJ37528" WD40-repeat protein upregulated in HCC WDR16 WD repeat domain 16 WD repeat domain containing 362 2001-07-16 2014-09-29 2014-09-29 2014-11-19 146845 ENSG00000166596 OTTHUMG00000150149 AB065281 NM_145054 "CCDS11149|CCDS42262" Q8N1V2 15967112 MGI:1919110 RGD:1308151 609804 440240 +HGNC:26530 CFAP53 cilia and flagella associated protein 53 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 FLJ32743 CCDC11 coiled-coil domain containing 11 2005-01-11 2014-09-03 2014-09-03 2015-09-11 220136 ENSG00000172361 OTTHUMG00000132668 BC030606 NM_145020 CCDS11940 Q96M91 22577226 MGI:1921703 RGD:1306734 614759 306106 +HGNC:26456 CFAP54 cilia and flagella associated protein 54 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "FLJ31514|FLJ44112" "C12orf63|C12orf55" "chromosome 12 open reading frame 63|chromosome 12 open reading frame 55|cilia and flagella associated 54" 2006-01-25 2014-09-04 2016-06-07 2016-06-07 144535 ENSG00000188596 OTTHUMG00000167566 AK056076 XM_001715090 CCDS76588 Q96N23 MGI:1922208 RGD:1589470 +HGNC:26485 CFAP57 cilia and flagella associated protein 57 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 FLJ32000 WDR65 WD repeat domain 65 WD repeat domain containing 362 2005-05-13 2014-08-12 2014-08-12 2015-08-24 149465 ENSG00000243710 OTTHUMG00000007285 AK056562 NM_152498 "CCDS479|CCDS72768" Q96MR6 "21574244|22447971" MGI:2686209 RGD:1585948 614259 +HGNC:26676 CFAP58 cilia and flagella associated protein 58 protein-coding gene gene with protein product Approved 10q25.1 10q25.1 "FLJ35908|bA554P13.1" "C10orf80|CCDC147" "chromosome 10 open reading frame 80|coiled-coil domain containing 147" 2004-02-18 2014-07-31 2014-07-31 2014-11-18 159686 ENSG00000120051 OTTHUMG00000019007 BX641120 NM_001008723 CCDS31282 Q5T655 MGI:2685815 RGD:1307961 +HGNC:45243 CFAP58-AS1 CFAP58 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 10q25.1 10q25.1 CCDC147-AS1 "CCDC147 antisense RNA 1|CCDC147 antisense RNA 1 (head to head)" 2013-03-11 2015-01-27 2015-01-27 2015-01-27 100505869 ENSG00000231233 OTTHUMG00000019005 "BI551201|BX093559|DB476363" NR_108036 +HGNC:15872 CFAP61 cilia and flagella associated protein 61 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "DKFZP434K156|dJ1002M8.3|CaM-IP3" hypothetical protein LOC26074 C20orf26 chromosome 20 open reading frame 26 2001-06-21 2014-07-31 2014-07-31 2014-11-18 26074 ENSG00000089101 OTTHUMG00000032006 AL117439 NM_015585 "CCDS33447|CCDS54452" Q8NHU2 "11780052|17967944" MGI:1926024 RGD:1311519 +HGNC:25325 CFAP65 cilia and flagella associated protein 65 protein-coding gene gene with protein product Approved 2q35 02q35 "DKFZp434O0527|MGC35338" CCDC108 coiled-coil domain containing 108 2006-05-18 2015-10-23 2015-10-23 2015-10-23 255101 ENSG00000181378 OTTHUMG00000133013 uc002vjl.3 "NM_194302|AL833882|AK127189" NM_194302 "CCDS2430|CCDS2431|CCDS63125|CCDS63126" Q6ZU64 22761584 MGI:2444274 RGD:1563002 614270 +HGNC:26107 CFAP69 cilia and flagella associated protein 69 protein-coding gene gene with protein product Approved 7q21.13 07q21.13 "FLJ21062|FAP69" "hypothetical protein FLJ21062|flagellar protein 69 homolog (Chlamydomonas)" C7orf63 chromosome 7 open reading frame 63 2008-07-21 2014-07-31 2014-07-31 2016-04-25 79846 ENSG00000105792 OTTHUMG00000023434 "AK024715|AY349356" NM_001039706 "CCDS43613|CCDS55122" A5D8W1 12477932 MGI:2443778 RGD:6496360 +HGNC:30726 CFAP70 cilia and flagella associated protein 70 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 FLJ25765 TTC18 tetratricopeptide repeat domain 18 Tetratricopeptide repeat domain containing 769 2004-04-22 2014-09-03 2014-09-03 2016-10-05 118491 ENSG00000156042 OTTHUMG00000018459 AF435959 NM_145170 CCDS7324 Q5T0N1 MGI:1923920 RGD:1307577 +HGNC:37100 CFAP73 cilia and flagella associated protein 73 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 MIA2 CCDC42B coiled-coil domain containing 42B 2009-06-19 2015-10-13 2015-10-13 2015-10-13 387885 ENSG00000186710 OTTHUMG00000169655 NM_001144872 CCDS44983 A6NFT4 23569216 MGI:3779542 RGD:1561303 +HGNC:29368 CFAP74 cilia and flagella associated protein 74 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ45476 "C1orf222|KIAA1751" "chromosome 1 open reading frame 222|KIAA1751" 2005-05-16 2014-09-04 2014-09-04 2015-08-24 85452 ENSG00000142609 OTTHUMG00000000945 AB051538 XM_017002641 Q9C0B2 MGI:1917130 RGD:2324110 +HGNC:33776 CFAP77 cilia and flagella associated protein 77 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 FLJ46082 C9orf171 chromosome 9 open reading frame 171 2009-03-05 2015-10-06 2015-10-06 2015-10-06 389799 ENSG00000188523 OTTHUMG00000131684 AK128819 NM_207417 "CCDS6949|CCDS65167" Q6ZQR2 25169055 MGI:2685669 RGD:1564114 +HGNC:29276 CFAP97 cilia and flagella associated protein 97 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "DKFZp434F1728|hmw" KIAA1430 KIAA1430 2004-04-21 2014-07-31 2014-07-31 2015-08-24 57587 ENSG00000164323 OTTHUMG00000160468 AB037851 XM_087593 "CCDS47168|CCDS75216" Q9P2B7 "10718198|24554765" MGI:1914006 RGD:1307325 616047 +HGNC:51180 CFAP99 cilia and flagella associated protein 99 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 2014-08-01 2016-07-29 402160 ENSG00000206113 OTTHUMG00000160515 NM_001193282 CCDS75092 D6REC4 MGI:5434801 RGD:1564567 +HGNC:26842 CFAP100 cilia and flagella associated protein 100 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "FLJ40083|MIA1" CCDC37 coiled-coil domain containing 37 2005-11-02 2015-10-13 2015-10-13 2016-10-05 348807 ENSG00000163885 OTTHUMG00000162691 AK097402 NM_182628 CCDS3037 Q494V2 23569216 MGI:2141635 RGD:1305768 +HGNC:32325 CFAP126 cilia and flagella associated protein 126 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "Flattop|Fltp" C1orf192 chromosome 1 open reading frame 192 2005-10-11 2014-10-13 2014-10-13 2014-11-19 257177 ENSG00000188931 OTTHUMG00000034462 NM_001013625 CCDS30921 Q5VTH2 25296022 MGI:1922722 RGD:1562658 616119 +HGNC:27843 CFAP157 cilia and flagella associated protein 157 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 C9orf117 chromosome 9 open reading frame 117 2004-03-25 2015-10-05 2015-10-05 2015-10-05 286207 ENSG00000160401 OTTHUMG00000020709 AK094948 NM_001012502 CCDS43878 Q5JU67 23300604 MGI:2447809 RGD:1560002 +HGNC:26782 CFAP161 cilia and flagella associated protein 161 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 FLJ38615 C15orf26 chromosome 15 open reading frame 26 2004-06-29 2015-10-05 2015-10-05 2015-10-05 161502 ENSG00000156206 OTTHUMG00000172263 AK095934 NM_173528 CCDS42068 Q6P656 24094744 MGI:1922806 RGD:1310371 +HGNC:21405 CFAP206 cilia and flagella associated protein 206 protein-coding gene gene with protein product Approved 6q15 06q15 "FLJ25974|dJ382I10.1" C6orf165 chromosome 6 open reading frame 165 2003-06-12 2015-10-05 2015-10-05 2015-10-05 154313 ENSG00000272514 OTTHUMG00000015173 BC035083 NM_178823 CCDS34498 Q8IYR0 22753897 MGI:1916579 RGD:1310641 +HGNC:33720 CFAP221 cilia and flagella associated protein 221 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "FAP221|PCDP1" "flagellar associated protein 221 homolog (Chlamydomonas)|primary ciliary dyskinesia 1 homolog (mouse)" 2014-07-03 2016-04-25 200373 ENSG00000163075 OTTHUMG00000153310 XM_017003550 CCDS33282 Q4G0U5 "18039845|20421426" MGI:2684947 RGD:1584968 +HGNC:1037 CFB complement factor B protein-coding gene gene with protein product Approved 6p21.33 06p21.33 H2-Bf "BFD|BF" B-factor, properdin "Complement system|Sushi domain containing" "492|1179" 1986-01-01 2006-02-10 2006-02-10 2016-10-12 629 ENSG00000243649 OTTHUMG00000031198 uc063wuq.1 L15702 NM_001710 CCDS4729 P00751 MGI:105975 RGD:2204 LRG_136|http://www.lrg-sequence.org/LRG/LRG_136 CFB 138470 158379 S01.196 objectId:2339 3.4.21.47 +HGNC:18292 CFC1 cripto, FRL-1, cryptic family 1 protein-coding gene gene with protein product Approved 2q21.1 02q21.1 CRYPTIC HTX2 heterotaxy 2 (autosomal dominant) 2004-02-04 2016-10-05 55997 ENSG00000136698 OTTHUMG00000131628 uc002tro.3 AF312769 NM_032545 "CCDS2162|CCDS74573|CCDS74574" P0CG37 "11062482|10858660" MGI:109448 CFC1 605194 119359 +HGNC:33983 CFC1B cripto, FRL-1, cryptic family 1B protein-coding gene gene with protein product Approved 2q21.1 02q21.1 2008-01-31 2015-09-07 653275 ENSG00000152093 OTTHUMG00000153959 uc002trl.3 NM_001079530 CCDS33286 P0CG36 MGI:109448 RGD:1562188 CFC1B +HGNC:2771 CFD complement factor D protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ADN adipsin "DF|PFD" "D component of complement (adipsin)|properdin factor D|complement factor D (adipsin)" Complement system 492 1992-10-21 2006-02-10 2016-05-06 2016-10-12 1675 ENSG00000197766 OTTHUMG00000181840 uc002lqc.4 M84526 NM_001928 "CCDS12046|CCDS82261" P00746 1374388 MGI:87931 RGD:2498 "CFDbase: Mutation registry for Factor D deficiency (previously known as DFbase)|http://structure.bmc.lu.se/idbase/CFDbase/|LRG_46|http://www.lrg-sequence.org/LRG/LRG_46" CFD 134350 221187 S01.191 objectId:2842 +HGNC:1873 CFDP1 craniofacial development protein 1 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "BCNT|p97|CP27|SWC5|Yeti|CENP-29" "Bucentaur|centromere protein 29" 1999-12-09 2016-10-05 10428 ENSG00000153774 OTTHUMG00000137615 uc002fdy.4 AB009285 NM_006324 CCDS10916 Q9UEE9 "9602175|9006920|11992732" MGI:1344403 RGD:735080 CFDP1 608108 +HGNC:4883 CFH complement factor H protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "HUS|FHL1|ARMS1|ARMD4" "beta-1H|H factor 2 (complement)|age-related maculopathy susceptibility 1" "HF|HF1|HF2" H factor 1 (complement) "Complement system|Sushi domain containing" "492|1179" 1986-01-01 2004-08-12 2004-08-09 2016-10-12 3075 ENSG00000000971 OTTHUMG00000035607 uc001gtj.4 Y00716 NM_000186 "CCDS1385|CCDS53452" P08603 "2889480|2963625" MGI:88385 RGD:620428 "CFHbase: Mutation registry for Factor H deficiency (previously known as HF1base)|http://structure.bmc.lu.se/idbase/CFHbase/|LRG_47|http://www.lrg-sequence.org/LRG/LRG_47" CFH 134370 119363 +HGNC:4888 CFHR1 complement factor H related 1 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "H36-1|FHR1|CFHL|H36-2" "HFL1|CFHL1|CFHR1P|HFL2|CFHL1P" "H factor (complement)-like 1|complement factor H-related 1 pseudogene|H factor (complement)-like 2|complement factor H-related 1" "Complement system|Sushi domain containing" "492|1179" 1991-11-15 2006-02-28 2016-01-19 2016-10-12 3078 ENSG00000244414 OTTHUMG00000036276 uc001gtn.4 M65292 NM_002113 CCDS1386 Q03591 "1711047|1826708" MGI:2138169 RGD:1310510 LRG_149|http://www.lrg-sequence.org/LRG/LRG_149 CFHR1 134371 286578 +HGNC:4890 CFHR2 complement factor H related 2 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 FHR2 "HFL3|CFHL2" "H factor (complement)-like 3|complement factor H-related 2" "Complement system|Sushi domain containing" "492|1179" 1993-10-18 2006-02-28 2016-01-19 2016-01-19 3080 ENSG00000080910 OTTHUMG00000036518 uc001gtq.2 X64877 NM_005666 CCDS30959 P36980 "1533657|7672821" CFHR2 600889 +HGNC:16980 CFHR3 complement factor H related 3 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "FHR-3|HLF4|FHR3|DOWN16" CFHL3 complement factor H-related 3 "Complement system|Sushi domain containing" "492|1179" 2004-08-09 2006-02-28 2016-01-19 2016-10-12 10878 ENSG00000116785 OTTHUMG00000035929 uc001gtl.4 X68679 NM_021023 "CCDS30958|CCDS53453" Q02985 "8428964|10380701" LRG_175|http://www.lrg-sequence.org/LRG/LRG_175 CFHR3 605336 286593 +HGNC:16979 CFHR4 complement factor H related 4 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "FHR-4|FHR4" CFHL4 complement factor H-related 4 "Complement system|Sushi domain containing" "492|1179" 2004-08-09 2006-02-28 2016-01-19 2016-10-05 10877 ENSG00000134365 OTTHUMG00000036647 uc009wyy.3 "X98337|AJ640130" NM_006684 "CCDS41451|CCDS55671" Q92496 "9038172|10380701" RGD:1564614 CFHR4 605337 +HGNC:24668 CFHR5 complement factor H related 5 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "FHR5|FHR-5" factor H related protein 5 CFHL5 complement factor H-related 5 "Complement system|Sushi domain containing" "492|1179" 2004-08-09 2006-02-28 2016-01-19 2016-10-12 81494 ENSG00000134389 OTTHUMG00000036517 uc001gts.5 AF295327 NM_030787 CCDS1387 Q9BXR6 "11058592|12041828" LRG_227|http://www.lrg-sequence.org/LRG/LRG_227 CFHR5 608593 286604 +HGNC:5394 CFI complement factor I protein-coding gene gene with protein product Approved 4q25 04q25 "FI|C3b-INA|KAF" "Konglutinogen-activating factor|C3b-inactivator" IF I factor (complement) Complement system 492 1986-01-01 2006-02-10 2006-02-10 2016-10-12 3426 ENSG00000205403 OTTHUMG00000161109 uc003hzr.5 J02770 NM_000204 "CCDS34049|CCDS82945|CCDS82946" P05156 2956252 MGI:105937 RGD:620429 "CFIbase: Mutation registry for Factor I deficiency (previously known as IFbase)|http://structure.bmc.lu.se/idbase/CFIbase/|LRG_48|http://www.lrg-sequence.org/LRG/LRG_48" CFI 217030 119371 S01.199 3.4.21.45 +HGNC:1874 CFL1 cofilin 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 CFL cofilin 1 (non-muscle) 1991-07-16 2016-01-19 2016-01-19 1072 ENSG00000172757 OTTHUMG00000166602 uc001oft.4 X95404 NM_005507 CCDS8114 P23528 8800436 MGI:101757 RGD:69285 CFL1 601442 +HGNC:28560 CFL1P1 cofilin 1 pseudogene 1 pseudogene pseudogene Approved 10q23.31 10q23.31 MGC35136 CFLP1 cofilin pseudogene 1 2004-04-15 2011-04-18 2016-01-19 2016-10-05 142913 ENSG00000223820 OTTHUMG00000018684 NG_004788 12477932 PGOHUM00000238876 +HGNC:1878 CFL1P2 cofilin 1 pseudogene 2 pseudogene pseudogene Approved 1p32.3 01p32.3 "CFLL2|CFLP2" "cofilin-like 2|cofilin pseudogene 2" 1991-06-03 2011-04-18 2016-01-19 2016-01-19 391039 ENSG00000213478 OTTHUMG00000008194 XR_017560 PGOHUM00000244022 +HGNC:1879 CFL1P3 cofilin 1 pseudogene 3 pseudogene pseudogene Approved 1p31.3 01p31.3 "CFLL3|CFLP3" "cofilin-like 3|cofilin pseudogene 3" 1991-06-03 2011-04-18 2016-01-19 2016-01-19 100131874 ENSG00000228056 OTTHUMG00000009021 NG_008819 PGOHUM00000244055 +HGNC:1880 CFL1P4 cofilin 1 pseudogene 4 pseudogene pseudogene Approved 1q43 01q43 "CFLL4|CFLP4" "cofilin-like 4|cofilin pseudogene 4" 1991-06-03 2011-04-18 2016-01-19 2016-01-19 645980 ENSG00000213026 OTTHUMG00000039864 NG_008824 PGOHUM00000245278 +HGNC:1877 CFL1P5 cofilin 1 pseudogene 5 pseudogene pseudogene Approved 5q13.2 05q13.2 "CFLL1|CFLP5" "cofilin-like 1|cofilin pseudogene 5" 1991-06-03 2011-04-18 2016-01-19 2016-01-19 1074 ENSG00000213830 OTTHUMG00000162502 NG_008755 PGOHUM00000235250 +HGNC:34545 CFL1P6 cofilin 1 pseudogene 6 pseudogene pseudogene Approved 1p36.22 01p36.22 CFLP6 cofilin pseudogene 6 2008-08-29 2011-04-18 2016-01-19 2016-01-19 390996 ENSG00000215785 OTTHUMG00000002033 NG_032826 PGOHUM00000243889 +HGNC:39959 CFL1P7 cofilin 1 pseudogene 7 pseudogene pseudogene Approved 3p24.2 03p24.2 2011-04-18 2016-01-19 2016-01-19 100505919 ENSG00000213877 OTTHUMG00000155603 NG_028939 PGOHUM00000237963 +HGNC:39960 CFL1P8 cofilin 1 pseudogene 8 pseudogene pseudogene Approved 13q32.3 13q32.3 2011-04-18 2016-01-19 2016-01-19 100873812 ENSG00000234239 OTTHUMG00000017274 NG_032369 PGOHUM00000257962 +HGNC:1875 CFL2 cofilin 2 protein-coding gene gene with protein product Approved 14q13.1 14q13.1 NEM7 nemaline myopathy type 7 cofilin 2 (muscle) 1995-07-11 2016-01-19 2016-10-12 1073 ENSG00000165410 OTTHUMG00000029536 uc001wsh.4 AF087867 NM_138638 "CCDS9649|CCDS9650|CCDS58311" Q9Y281 8800436 MGI:101763 RGD:1306982 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=CFL2|LRG_213|http://www.lrg-sequence.org/LRG/LRG_213" CFL2 601443 119377 +HGNC:1876 CFLAR CASP8 and FADD like apoptosis regulator protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "CASH|Casper|CLARP|FLAME|FLIP|I-FLICE|MRIT|c-FLIP" CASP8AP1 CASP8 and FADD-like apoptosis regulator "Endogenous ligands|Death effector domain containing|Death inducing signaling complex " "542|1019|1342" 1999-05-07 2015-11-12 2016-10-05 8837 ENSG00000003402 OTTHUMG00000132819 uc002uxb.5 AF005774 NM_003879 "CCDS2337|CCDS46487|CCDS56157|CCDS56158|CCDS59436|CCDS77503|CCDS77505" O15519 "9208847|9217161" MGI:1336166 RGD:620847 CFLAR 603599 C14.971 +HGNC:14437 CFLAR-AS1 CFLAR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q33.1 02q33.1 ALS2CR10 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 10|CFLAR antisense RNA 1 (non-protein coding)" 2001-01-26 2011-04-28 2012-08-15 2016-10-05 65072 ENSG00000226312 OTTHUMG00000154713 uc002uxh.2 AB053312 NR_040030 +HGNC:1881 CFM1 cystic fibrosis modifier 1 phenotype phenotype only Approved 19q13.2-q13.3 19q13.2-q13.3 1999-04-15 2012-03-12 10167 "8589719|10369249" MGI:106062 603855 +HGNC:1882 CFM2 cystic fibrosis modifier 2 phenotype phenotype only Approved reserved reserved 1999-04-15 2011-02-17 23727 +HGNC:8864 CFP complement factor properdin protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 PFC properdin P factor, complement Complement system 492 1989-06-07 2006-03-02 2006-03-02 2016-10-12 5199 ENSG00000126759 OTTHUMG00000021451 uc004dih.4 M83652 NM_002621 CCDS14282 P27918 1783405 MGI:97545 RGD:1594557 "PFCbase: Mutation registry for properdin deficiency|http://structure.bmc.lu.se/idbase/CFPbase/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CFP|LRG_129|http://www.lrg-sequence.org/LRG/LRG_129" CFP 300383 119379 +HGNC:1884 CFTR cystic fibrosis transmembrane conductance regulator protein-coding gene gene with protein product Approved 7q31.2 07q31.2 "MRP7|ABC35|TNR-CFTR|dJ760C5.1|CFTR/MRP" ATP-binding cassette sub-family C, member 7 "CF|ABCC7" cystic fibrosis transmembrane conductance regulator, ATP-binding cassette (sub-family C, member 7) "Chloride channels, ATP-gated CFTR|ATP binding cassette subfamily C" "309|807" 1986-01-01 2015-11-12 2016-10-12 1080 ENSG00000001626 OTTHUMG00000023076 uc003vjd.4 M28668 NM_000492 CCDS5773 P13569 2772657 MGI:88388 RGD:2332 "Cystic Fibrosis|http://www.genet.sickkids.on.ca/cftr/|LRG_663|http://www.lrg-sequence.org/LRG/LRG_663" CFTR 602421 119382 objectId:707 +HGNC:16182 CFTRP1 cystic fibrosis transmembrane conductance regulator pseudogene 1 pseudogene pseudogene Approved 20p11.1 20p11.1 dJ760C5.1 C20orf189 chromosome 20 open reading frame 189 2001-07-17 2010-12-17 2010-12-17 2014-10-02 140871 ENSG00000228593 OTTHUMG00000032142 AL078587 NG_002787 PGOHUM00000296935 +HGNC:51351 CFTRP2 cystic fibrosis transmembrane conductance regulator pseudogene 2 pseudogene pseudogene Approved 20q11.1 20q11.1 2014-10-14 2015-05-18 107080633 ENSG00000282921 OTTHUMG00000191534 NG_046396 PGOHUM00000297088 +HGNC:51352 CFTRP3 cystic fibrosis transmembrane conductance regulator pseudogene 3 pseudogene pseudogene Approved 20q11.1 20q11.1 2014-10-14 2014-10-14 106481718 ENSG00000204555 OTTHUMG00000032151 NG_043365 PGOHUM00000296949 +HGNC:1885 CGA glycoprotein hormones, alpha polypeptide protein-coding gene gene with protein product Approved 6q14.3 06q14.3 "HCG|GPHa|GPHA1|FSHA|LHA|TSHA" "follicle-stimulating hormone alpha subunit|chorionic gonadotropin, alpha polypeptide|luteinizing hormone alpha chain|lutropin alpha chain|thyroid-stimulating hormone alpha chain|glycoprotein hormones alpha chain" Endogenous ligands 542 1986-01-01 2015-08-25 1081 ENSG00000135346 OTTHUMG00000015161 uc003plj.3 V00518 NM_000735 "CCDS5007|CCDS75492" P01215 6286817 MGI:88390 RGD:620436 CGA 118850 +HGNC:16721 CGB1 chorionic gonadotropin beta subunit 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 chorionic gonadotropin, beta polypeptide 1 2001-12-05 2016-01-12 2016-10-05 114335 ENSG00000267631 OTTHUMG00000150186 uc002plx.4 S80935 NM_033377 CCDS12751 A6NKQ9 6194155 CGB1 608823 +HGNC:16722 CGB2 chorionic gonadotropin beta subunit 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 chorionic gonadotropin, beta polypeptide 2 2001-12-05 2016-01-12 2016-10-05 114336 ENSG00000104818 OTTHUMG00000150185 uc002plw.4 K03184 NM_033378 CCDS12750 Q6NT52 6194155 CGB2 608824 +HGNC:1886 CGB3 chorionic gonadotropin beta subunit 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 CGB chorionic gonadotropin, beta polypeptide Endogenous ligands 542 2001-06-22 2016-01-12 2016-01-12 2016-01-12 1082 ENSG00000104827 OTTHUMG00000180605 uc002plv.3 J00117 NM_000737 CCDS12749 P0DN86 "6774259|6194155" 118860 +HGNC:16452 CGB5 chorionic gonadotropin beta subunit 5 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 HCG chorionic gonadotropin, beta polypeptide 5 2001-12-05 2016-01-12 2016-10-05 93659 ENSG00000189052 OTTHUMG00000183337 uc002ply.4 X00265 NM_033043 CCDS12752 P0DN86 6194155 CGB5 608825 +HGNC:16451 CGB7 chorionic gonadotropin beta subunit 7 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 CG-beta-a chorionic gonadotropin, beta polypeptide 7 2001-12-05 2016-01-12 2016-10-05 94027 ENSG00000196337 OTTHUMG00000183339 uc061ayv.1 K00092 NM_033142 CCDS33071 P0DN87 6194155 CGB7 608826 +HGNC:16453 CGB8 chorionic gonadotropin beta subunit 8 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 chorionic gonadotropin, beta polypeptide 8 2001-12-05 2016-01-12 2016-10-05 94115 ENSG00000213030 OTTHUMG00000180609 uc002pmb.5 BG435249 NM_033183 CCDS12753 P0DN86 6194155 CGB8 608827 +HGNC:1887 CGF1 cognitive function 1, social phenotype phenotype only Approved Xp11.22-qter Xp11.22-qter 1997-06-18 2009-05-08 1083 9192895 300082 +HGNC:1888 CGGBP1 CGG triplet repeat binding protein 1 protein-coding gene gene with protein product Approved 3p11.1 03p11.1 "p20-CGGBP|CGGBP" p20-CGG binding protein 1999-04-29 2015-01-28 8545 ENSG00000163320 OTTHUMG00000159009 uc003dqu.4 AJ000258 NM_001008390 CCDS43111 Q9UFW8 "9201980|14667814" MGI:2146370 RGD:1308129 CGGBP1 603363 +HGNC:17429 CGN cingulin protein-coding gene gene with protein product Approved 1q21.3 01q21.3 KIAA1319 2003-07-24 2016-10-05 57530 ENSG00000143375 OTTHUMG00000012497 uc009wmw.4 AB037740 NM_020770 CCDS999 Q9P2M7 "11042084|12529927" MGI:1927237 RGD:1311992 CGN 609473 +HGNC:25931 CGNL1 cingulin like 1 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "FLJ14957|JACOP|KIAA1749|PCING" "junction-associated coiled-coil protein|paracingulin" 2004-11-10 2016-06-27 2016-06-27 84952 ENSG00000128849 OTTHUMG00000166485 uc002aeg.3 AY274808 NM_032866 CCDS10161 Q0VF96 "11214970|22315225" MGI:1915428 RGD:1304623 CGNL1 607856 +HGNC:16962 CGREF1 cell growth regulator with EF-hand domain 1 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 CGR11 EF-hand domain containing 863 2003-09-29 2016-04-25 10669 ENSG00000138028 OTTHUMG00000152009 uc021vfa.2 BC034764 NM_006569 "CCDS33162|CCDS54339" Q99674 8968090 MGI:1915817 RGD:620801 CGREF1 606137 +HGNC:15528 CGRRF1 cell growth regulator with ring finger domain 1 protein-coding gene gene with protein product Approved 14q22.2 14q22.2 "CGR19|RNF197" Ring finger proteins 58 2003-09-29 2015-08-24 10668 ENSG00000100532 OTTHUMG00000140308 uc001xay.4 BC015063 NM_006568 CCDS9719 Q99675 8968090 MGI:1916368 RGD:620803 CGRRF1 606138 +HGNC:1907 CH25H cholesterol 25-hydroxylase protein-coding gene gene with protein product Approved 10q23.31 10q23.31 Fatty acid hydroxylase domain containing 552 1999-11-11 2016-10-05 9023 ENSG00000138135 OTTHUMG00000018705 uc001kfz.4 AF059212 NM_003956 CCDS7400 O95992 9852097 MGI:1333869 RGD:1310575 CH25H 604551 1.14.99.38 +HGNC:28680 CHAC1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 MGC4504 gamma-GCT acting on glutathione homolog 1 ChaC, cation transport regulator homolog 1 (E. coli) 2005-10-25 2016-05-16 2016-05-16 79094 ENSG00000128965 OTTHUMG00000130208 uc059hwj.1 BC019625 NM_024111 "CCDS10070|CCDS45233" Q9BUX1 23070364 MGI:1916315 RGD:1307153 CHAC1 614587 +HGNC:32363 CHAC2 ChaC cation transport regulator homolog 2 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 gamma-GCT acting on glutathione homolog 2 "ChaC, cation transport regulator-like 2 (E. coli)|ChaC, cation transport regulator homolog 2 (E. coli)" 2005-10-25 2016-05-03 2016-10-05 494143 ENSG00000143942 OTTHUMG00000151824 uc002rxk.2 BC025376 NM_001008708 CCDS33196 Q8WUX2 23070364 MGI:1915294 RGD:1309120 CHAC2 +HGNC:1909 CHAD chondroadherin protein-coding gene gene with protein product Approved 17q21.33 17q21.33 SLRR4A chondroadherin proteoglycan Small leucine rich repeat proteoglycans 573 1997-07-11 2014-11-19 1101 ENSG00000136457 OTTHUMG00000162129 uc010dbr.4 U96767 NM_001267 CCDS11568 O15335 9344663 MGI:1096866 RGD:2336 CHAD 602178 +HGNC:25165 CHADL chondroadherin like protein-coding gene gene with protein product Approved 22q13.2 22q13.2 SLRR4B chondroadherin-like 2007-11-21 2015-12-01 2015-12-01 150356 ENSG00000100399 OTTHUMG00000150936 uc003azq.5 BC012882 NM_138481 CCDS46715 Q6NUI6 25451920 MGI:3036284 RGD:6504353 CHADL 616236 +HGNC:1910 CHAF1A chromatin assembly factor 1 subunit A protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "CAF1P150|CAF1B|CAF-1|CAF1|P150|MGC71229" chromatin assembly factor I (150 kDa) chromatin assembly factor 1, subunit A (p150) 1999-09-29 2015-11-23 2015-11-23 10036 ENSG00000167670 OTTHUMG00000181922 uc002mal.4 U20979 NM_005483 CCDS32875 Q13111 7600578 MGI:1351331 RGD:1590865 CHAF1A 601246 +HGNC:1911 CHAF1B chromatin assembly factor 1 subunit B protein-coding gene gene with protein product Approved 21q22.12-q22.13 21q22.12-q22.13 "CAF1P60|CAF-1|CAF1|CAF1A|MPP7|MPHOSPH7" "M-phase phosphoprotein 7|Chromatin assembly factor I, p60 subunit|human chromatin assembly factor-I p60 subunit" chromatin assembly factor 1, subunit B (p60) WD repeat domain containing 362 1999-09-29 2015-11-23 2016-10-11 8208 ENSG00000159259 OTTHUMG00000086606 uc002yvj.4 U20980 NM_005441 CCDS13644 Q13112 "7600578|8792829" MGI:1314881 RGD:1307634 CHAF1B 601245 +HGNC:20311 CHAMP1 chromosome alignment maintaining phosphoprotein 1 protein-coding gene gene with protein product Approved 13q34 13q34 "CAMP|CHAMP" chromosome alignment-maintaining phosphoprotein "C13orf8|ZNF828" "chromosome 13 open reading frame 8|zinc finger protein 828" Zinc fingers C2H2-type 28 2003-01-24 2011-10-07 2011-10-07 2015-03-03 283489 ENSG00000198824 OTTHUMG00000017404 uc001vuv.4 AK074894 NM_032436 CCDS9545 Q96JM3 21063390 MGI:1196398 RGD:1311283 616327 460746 +HGNC:1912 CHAT choline O-acetyltransferase protein-coding gene gene with protein product Approved 10q11.23 10q11.23 choline acetyltransferase 1990-03-14 2010-05-11 2016-10-05 1103 ENSG00000070748 OTTHUMG00000018198 uc001jhz.2 AF305907 NM_020549 "CCDS7232|CCDS7233|CCDS44389" P28329 1840566 MGI:88392 RGD:1304627 CHAT 118490 119387 objectId:2480 2.3.1.6 +HGNC:23518 CHCHD1 coiled-coil-helix-coiled-coil-helix domain containing 1 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 FLJ25854 C10orf34 chromosome 10 open reading frame 34 Coiled-coil-helix-coiled-coil-helix domain containing 489 2004-04-30 2004-01-19 2016-10-05 118487 ENSG00000172586 OTTHUMG00000018475 uc001jvc.5 AK098720 XM_058325 CCDS7334 Q96BP2 MGI:1913371 RGD:1307134 CHCHD1 608842 +HGNC:21645 CHCHD2 coiled-coil-helix-coiled-coil-helix domain containing 2 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 C7orf17 chromosome 7 open reading frame 17 Coiled-coil-helix-coiled-coil-helix domain containing 489 2003-07-14 2004-01-21 2004-01-19 2015-09-11 51142 ENSG00000106153 OTTHUMG00000129429 uc003tsa.4 AF078845 NM_016139 CCDS5526 Q9Y6H1 23303788 MGI:1261428 RGD:1309819 CHCHD2 616244 +HGNC:39585 CHCHD2P1 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 1 pseudogene pseudogene Approved Xq25 Xq25 2011-03-16 2014-11-19 100874506 ENSG00000226902 OTTHUMG00000022333 NG_032323 PGOHUM00000241993 +HGNC:39586 CHCHD2P2 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 2 pseudogene pseudogene Approved 5q13.2 05q13.2 2011-03-16 2014-11-19 728324 ENSG00000215006 OTTHUMG00000162501 NG_028950 PGOHUM00000235617 +HGNC:39587 CHCHD2P3 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 3 pseudogene pseudogene Approved 19q13.11 19q13.11 2011-03-16 2016-07-25 100128110 ENSG00000270849 OTTHUMG00000184270 NG_028973 PGOHUM00000295336 +HGNC:39588 CHCHD2P4 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 4 pseudogene pseudogene Approved 6q23.2 06q23.2 2011-03-16 2014-11-19 100874507 ENSG00000213118 OTTHUMG00000015614 NG_032324 PGOHUM00000243382 +HGNC:39589 CHCHD2P5 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 5 pseudogene pseudogene Approved 1p22.1 01p22.1 2011-03-16 2014-11-18 100874508 ENSG00000223490 OTTHUMG00000057597 NG_032325 PGOHUM00000244108 +HGNC:39590 CHCHD2P6 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 6 pseudogene pseudogene Approved 1p36.21 01p36.21 2011-03-16 2014-11-19 645317 ENSG00000235084 OTTHUMG00000002360 NG_028927 PGOHUM00000244613 +HGNC:39591 CHCHD2P7 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 7 pseudogene pseudogene Approved 4q22.1 04q22.1 2011-03-16 2014-11-19 100874509 ENSG00000249973 OTTHUMG00000160999 NG_032326 PGOHUM00000245620 +HGNC:39592 CHCHD2P8 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 8 pseudogene pseudogene Approved 13q12.2 13q12.2 2011-03-16 2014-11-19 646630 ENSG00000235115 OTTHUMG00000016643 NG_006975 PGOHUM00000248553 +HGNC:23676 CHCHD2P9 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 9 pseudogene pseudogene Approved 9q21.31 09q21.31 "C9orf49|CHCHD9" coiled-coil-helix-coiled-coil-helix domain containing 9 2005-12-22 2011-03-16 2011-03-16 2016-10-05 645345 ENSG00000186940 OTTHUMG00000020069 AL450243 NG_009939 Q5T1J5 CHCHD2P9 PGOHUM00000250528 +HGNC:39593 CHCHD2P10 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 10 pseudogene pseudogene Approved 8q11.23 08q11.23 2011-03-16 2014-11-19 392221 NG_028946 PGOHUM00000249344 +HGNC:49029 CHCHD2P11 coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 11 pseudogene pseudogene Approved 13q14.11 13q14.11 2013-08-13 2013-08-13 101060040 ENSG00000270809 OTTHUMG00000184722 PGOHUM00000248386 +HGNC:21906 CHCHD3 coiled-coil-helix-coiled-coil-helix domain containing 3 protein-coding gene gene with protein product Approved 7q32.3-q33 07q32.3-q33 "FLJ20420|MINOS3|PPP1R22|Mic19" "mitochondrial inner membrane organizing system 3|protein phosphatase 1, regulatory subunit 22" "Coiled-coil-helix-coiled-coil-helix domain containing|Protein phosphatase 1 regulatory subunits" "489|694" 2004-01-19 2016-10-11 54927 ENSG00000106554 OTTHUMG00000155231 uc003vre.4 BC011596 NM_017812 CCDS5828 Q9NX63 "22252321|23019327|21081504|17624330" MGI:1913325 RGD:1310325 CHCHD3 613748 +HGNC:44697 CHCHD3P1 coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 1 pseudogene pseudogene Approved 10p14 10p14 2012-12-04 2012-12-04 338591 ENSG00000236420 OTTHUMG00000017649 NG_022161 PGOHUM00000238673 +HGNC:44698 CHCHD3P2 coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 2 pseudogene pseudogene Approved 12q21.1 12q21.1 2012-12-04 2012-12-04 100422354 ENSG00000257723 OTTHUMG00000169680 NG_024109 PGOHUM00000239851 +HGNC:44699 CHCHD3P3 coiled-coil-helix-coiled-coil-helix domain containing 3 pseudogene 3 pseudogene pseudogene Approved 1p36.11 01p36.11 2012-12-04 2012-12-04 646572 ENSG00000214973 OTTHUMG00000004279 NG_030193 PGOHUM00000243946 +HGNC:26467 CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "FLJ31709|TIMM40|MIA40" "translocase of inner mitochondrial membrane 40 homolog (S. cerevisiae)|mitochondrial intermembrane space import and assembly 40 homolog (S. cerevisiae)" Coiled-coil-helix-coiled-coil-helix domain containing 489 2004-01-19 2015-08-27 131474 ENSG00000163528 OTTHUMG00000129805 uc003byj.5 BC017082 NM_144636 "CCDS2617|CCDS43054" Q8N4Q1 22214851 MGI:1919420 RGD:1310746 CHCHD4 611077 +HGNC:44489 CHCHD4P1 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 1 pseudogene pseudogene Approved 7q21.2 07q21.2 2012-11-12 2012-11-12 645862 NG_009441 PGOHUM00000233469 +HGNC:44490 CHCHD4P2 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 2 pseudogene pseudogene Approved 9q31.2 09q31.2 2012-11-12 2012-11-12 100128657 ENSG00000237360 OTTHUMG00000020455 NG_030088 PGOHUM00000236305 +HGNC:44491 CHCHD4P3 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 3 pseudogene pseudogene Approved 9p13.2 09p13.2 2012-11-12 2013-09-05 106480792 ENSG00000236156 OTTHUMG00000019913 NG_045709 +HGNC:44492 CHCHD4P4 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 4 pseudogene pseudogene Approved 3p25.3 03p25.3 2012-11-12 2012-11-12 728143 ENSG00000213964 OTTHUMG00000155252 NG_030101 PGOHUM00000237531 +HGNC:44493 CHCHD4P5 coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 5 pseudogene pseudogene Approved 1q44 01q44 2012-11-12 2012-11-12 106479039 ENSG00000225222 OTTHUMG00000057839 NG_044415 PGOHUM00000245287 +HGNC:17840 CHCHD5 coiled-coil-helix-coiled-coil-helix domain containing 5 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "MGC11104|MIC14" mitochondrial intermembrane space cysteine motif protein of 14 kDa homolog (S. cerevisiae) C2orf9 chromosome 2 open reading frame 9 Coiled-coil-helix-coiled-coil-helix domain containing 489 2002-01-29 2004-01-21 2004-01-19 2015-08-24 84269 ENSG00000125611 OTTHUMG00000131312 uc002thz.2 BC004498 NM_032309 CCDS2098 Q9BSY4 22842048 MGI:1913420 RGD:1307809 CHCHD5 616978 +HGNC:28184 CHCHD6 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "MGC13016|PPP1R23|CHCM1|Mic25" "protein phosphatase 1, regulatory subunit 23|coiled-coil-helix cristae morphology 1" "Coiled-coil-helix-coiled-coil-helix domain containing|Protein phosphatase 1 regulatory subunits" "489|694" 2004-01-19 2015-08-24 84303 ENSG00000159685 OTTHUMG00000159601 uc003ejf.3 BC006123 NM_032343 CCDS3041 Q9BRQ6 "17624330|22228767" MGI:1913348 RGD:1304561 CHCHD6 615634 +HGNC:28314 CHCHD7 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 "MGC2217|COX23" COX23 cytochrome c oxidase assembly homolog (S. cerevisiae) Coiled-coil-helix-coiled-coil-helix domain containing 489 2004-01-19 2016-10-05 79145 ENSG00000170791 OTTHUMG00000074081 uc003xsx.4 AK095922 NM_024300 "CCDS34895|CCDS34896|CCDS6166|CCDS55232|CCDS55233|CCDS83294" Q9BUK0 "20922212|22842048" MGI:1913683 RGD:1592689 CHCHD7 611238 +HGNC:15559 CHCHD10 coiled-coil-helix-coiled-coil-helix domain containing 10 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 N27C7-4 C22orf16 chromosome 22 open reading frame 16 Coiled-coil-helix-coiled-coil-helix domain containing 489 2004-06-24 2008-06-13 2008-06-13 2015-08-24 400916 ENSG00000250479 OTTHUMG00000150736 uc062cgg.1 AB050774 NM_213720 "CCDS13815|CCDS77659" Q8WYQ3 24934289 MGI:2143558 RGD:1359417 CHCHD10 615903 406765 +HGNC:1915 CHD1 chromodomain helicase DNA binding protein 1 protein-coding gene gene with protein product Approved 5q15-q21.1 05q15-q21.1 1998-03-20 2016-10-11 1105 ENSG00000153922 OTTHUMG00000162744 uc063frt.1 AF006513 NM_001270 CCDS34204 O14646 "8460153|9326634" MGI:88393 RGD:1306794 CHD1 602118 +HGNC:1916 CHD1L chromodomain helicase DNA binding protein 1 like protein-coding gene gene with protein product Approved 1q21.1 01q21.1 ALC1 amplified in liver cancer 1 1999-05-28 2016-05-26 2016-05-26 9557 ENSG00000131778 OTTHUMG00000150271 uc001epm.6 AF054177 NM_004284 "CCDS927|CCDS58021|CCDS58022|CCDS72882" Q86WJ1 9653160 MGI:1915308 RGD:1311935 CHD1L 613039 +HGNC:1917 CHD2 chromodomain helicase DNA binding protein 2 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "FLJ38614|DKFZp547I1315|DKFZp781D1727|DKFZp686E01200" DNA helicases 1167 1998-03-20 2016-10-05 1106 ENSG00000173575 OTTHUMG00000185958 uc002bsp.4 AF006514 NM_001271 "CCDS10374|CCDS45356" O14647 9326634 MGI:2448567 RGD:1310056 CHD2 602119 361114 +HGNC:1918 CHD3 chromodomain helicase DNA binding protein 3 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "Mi-2a|ZFH|Mi2-ALPHA" "PHD finger proteins|NuRD complex" "88|1305" 1998-03-20 2016-10-05 1107 ENSG00000170004 OTTHUMG00000150427 uc002gjd.3 U08379 NM_001005273 "CCDS32553|CCDS32554|CCDS32555" Q12873 "9326634|7560064" MGI:1344395 RGD:1311923 CHD3 602120 +HGNC:1919 CHD4 chromodomain helicase DNA binding protein 4 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "Mi-2b|Mi2-BETA" "PHD finger proteins|NuRD complex" "88|1305" 1998-03-20 2016-10-05 1108 ENSG00000111642 OTTHUMG00000169164 uc001qpo.4 X86691 NM_001273 "CCDS8552|CCDS76510" Q14839 "7575689|27235397" MGI:1344380 RGD:620064 CHD4 603277 +HGNC:16816 CHD5 chromodomain helicase DNA binding protein 5 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "PHD finger proteins|NuRD complex" "88|1305" 2002-11-29 2016-10-05 26038 ENSG00000116254 OTTHUMG00000000952 uc001amb.3 AF425231 NM_015557 CCDS57 Q8TDI0 "11889561|12592387" MGI:3036258 RGD:1582725 CHD5 610771 +HGNC:19057 CHD6 chromodomain helicase DNA binding protein 6 protein-coding gene gene with protein product Approved 20q12 20q12 "KIAA1335|FLJ22369|dJ620E11.1|CHD5|RIGB" Myb/SANT domain containing 532 2003-03-07 2015-08-27 84181 ENSG00000124177 OTTHUMG00000032487 uc002xka.3 AF525085 XM_017028099 CCDS13317 Q8TD26 11889561 MGI:1918639 RGD:1310465 CHD6 616114 +HGNC:20626 CHD7 chromodomain helicase DNA binding protein 7 protein-coding gene gene with protein product Approved 8q12.2 08q12.2 "KIAA1416|FLJ20357|FLJ20361" CRG CHARGE association "Myb/SANT domain containing|DNA helicases" "532|1167" 2004-06-22 2016-10-12 55636 ENSG00000171316 OTTHUMG00000165332 uc003xue.4 AB037837 XM_098762 "CCDS47865|CCDS83299" Q9P2D1 "15300250|18834967" MGI:2444748 RGD:1311921 LRG_176|http://www.lrg-sequence.org/LRG/LRG_176 CHD7 608892 119389 +HGNC:20153 CHD8 chromodomain helicase DNA binding protein 8 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "KIAA1564|DUPLIN" HELSNF1 helicase with SNF2 domain 1 2002-12-18 2004-06-23 2004-06-22 2015-09-11 57680 ENSG00000100888 OTTHUMG00000170759 uc001was.3 AB046784 NM_020920 "CCDS45081|CCDS53885" Q9HCK8 10997877 MGI:1915022 RGD:620696 CHD8 610528 321632 +HGNC:25701 CHD9 chromodomain helicase DNA binding protein 9 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 "FLJ12178|KIAA0308|BC022889" 2004-06-22 2006-04-12 80205 ENSG00000177200 OTTHUMG00000173188 uc002egy.4 AK022240 NM_025134 "CCDS45485|CCDS76865" Q3L8U1 9205841 MGI:1924001 RGD:1306795 CHD9 616936 +HGNC:24288 CHDH choline dehydrogenase protein-coding gene gene with protein product Approved 3p21.1 03p21.1 2004-11-24 2016-10-05 55349 ENSG00000016391 OTTHUMG00000158281 uc003dgz.4 AJ272267 NM_018397 CCDS2873 Q8NE62 MGI:1860776 RGD:735166 CHDH 1.1.99.1 +HGNC:1923 CHED1 corneal endothelial dystrophy 1 (autosomal dominant) phenotype phenotype only Approved 20p11.2-q11.2 20p11.2-q11.2 CHED 1999-04-28 1999-04-28 8197 8634716 +HGNC:1925 CHEK1 checkpoint kinase 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 CHK1 "CHK1 (checkpoint, S.pombe) homolog|CHK1 checkpoint homolog (S. pombe)" 1998-04-21 2011-11-11 2011-11-11 1111 ENSG00000149554 OTTHUMG00000165853 uc001qcf.5 "AF016582|BC017575" NM_001274 "CCDS8459|CCDS58191|CCDS81644|CCDS81645" O14757 "9278511|9382850" MGI:1202065 RGD:620545 CHEK1 603078 objectId:1987 +HGNC:16627 CHEK2 checkpoint kinase 2 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 "CDS1|CHK2|HuCds1|PP1425|bA444G7" RAD53 "CHK2 (checkpoint, S.pombe) homolog|CHK2 checkpoint homolog (S. pombe)" 2001-09-19 2001-09-27 2011-11-11 2016-10-12 11200 ENSG00000183765 OTTHUMG00000151023 uc003adu.2 AF086904 NM_001005735 "CCDS13843|CCDS13844|CCDS33629" O96017 "9836640|10097108" MGI:1355321 RGD:621543 LRG_302|http://www.lrg-sequence.org/LRG/LRG_302 CHEK2 604373 119394 objectId:1988 +HGNC:37999 CHEK2P1 checkpoint kinase 2 pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 CHEK2L1 CHK2 checkpoint homolog (S. pombe)-like 1 2010-06-30 2011-11-11 2011-11-11 2011-11-11 100133012 NG_029074 PGOHUM00000233949 +HGNC:43578 CHEK2P2 checkpoint kinase 2 pseudogene 2 pseudogene pseudogene Approved 15q11.1 15q11.1 2011-11-11 2011-11-11 646096 ENSG00000259156 OTTHUMG00000171660 NR_038836 PGOHUM00000246957 +HGNC:43579 CHEK2P3 checkpoint kinase 2 pseudogene 3 pseudogene pseudogene Approved 2p11.1 02p11.1 2011-11-11 2012-04-13 100873791 ENSG00000234898 OTTHUMG00000155087 NG_032562 PGOHUM00000240775 +HGNC:43580 CHEK2P4 checkpoint kinase 2 pseudogene 4 pseudogene pseudogene Approved 22q11.1 22q11.1 2011-11-11 2011-11-11 2011-11-11 106479021 ENSG00000235969 OTTHUMG00000140400 NG_044261 PGOHUM00000246381 +HGNC:43581 CHEK2P5 checkpoint kinase 2 pseudogene 5 pseudogene pseudogene Approved 10p11.1 10p11.1 2011-11-15 2011-11-15 106479022 ENSG00000234541 OTTHUMG00000017999 NG_044270 PGOHUM00000238744 +HGNC:1926 CHEL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:1927 CHEL3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-10-14 +HGNC:16930 CHERP calcium homeostasis endoplasmic reticulum protein protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "ERPROT213-21|DAN16" G-patch domain containing 579 2002-01-25 2016-10-05 10523 ENSG00000085872 OTTHUMG00000169304 uc002nei.2 U94836 NM_006387 CCDS42518 Q8IWX8 "8896557|10794731" MGI:106417 RGD:1305279 CHERP +HGNC:23778 CHES1L1 checkpoint suppressor 1-like 1 other unknown Approved 18q21.32 18q21.32 C18orf7 2005-12-22 2005-12-22 2014-02-12 654377 AC090771 +HGNC:20455 CHFR checkpoint with forkhead and ring finger domains protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "FLJ10796|RNF196" "checkpoint with forkhead and ring finger domains|checkpoint with forkhead and ring finger domains, E3 ubiquitin protein ligase" Ring finger proteins 58 2003-02-14 2016-08-24 2016-08-24 55743 ENSG00000072609 OTTHUMG00000167930 uc001ulf.3 AK001658 NM_001161344 "CCDS31937|CCDS53847|CCDS53848|CCDS53849" Q96EP1 "10935642|11807090" MGI:2444898 RGD:1306360 CHFR 605209 +HGNC:1929 CHGA chromogranin A protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "vasostatin|pancreastatin|parastatin|parathyroid secretory protein 1" Granins 925 2001-06-22 2015-03-16 2016-10-05 1113 ENSG00000100604 OTTHUMG00000171225 uc001ybc.6 NM_001275 "CCDS9906|CCDS76718" P10645 3403545 MGI:88394 RGD:2338 CHGA 118910 +HGNC:1930 CHGB chromogranin B protein-coding gene gene with protein product Approved 20p12.3 20p12.3 SgI secretogranin B SCG1 secretogranin 1 Granins 925 1990-07-06 2015-03-16 2015-03-16 1114 ENSG00000089199 OTTHUMG00000031821 uc002wmg.4 NM_001819 CCDS13092 P05060 3608978 MGI:88395 RGD:2339 CHGB 118920 +HGNC:1932 CHI3L1 chitinase 3 like 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "GP39|YKL40" cartilage glycoprotein-39 chitinase 3-like 1 (cartilage glycoprotein-39) Chitinases 816 1994-12-20 2015-11-30 2015-11-30 1116 ENSG00000133048 OTTHUMG00000042122 uc001gzi.3 BC008568 NM_001276 CCDS1435 P36222 "8245017|9244440" MGI:1340899 RGD:620874 CHI3L1 601525 +HGNC:1933 CHI3L2 chitinase 3 like 2 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "YKL-39|YKL39" chitinase 3-like 2 Chitinases 816 1994-12-20 2015-11-30 2016-10-05 1117 ENSG00000064886 OTTHUMG00000012174 uc057jho.1 U49835 NM_004000 "CCDS30802|CCDS30803|CCDS41367" Q15782 8702629 CHI3L2 601526 +HGNC:17432 CHIA chitinase, acidic protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "AMCase|TSA1902|CHIT2" acidic mammalian chitinase Chitinases 816 2005-08-16 2015-11-30 27159 ENSG00000134216 OTTHUMG00000011165 uc001eas.5 AF290004 XM_006710577 "CCDS832|CCDS41368|CCDS58017" Q9BZP6 11085997 MGI:1932052 RGD:1303058 CHIA 606080 +HGNC:44462 CHIAP1 chitinase, acidic pseudogene 1 pseudogene pseudogene Approved 1p13.2 01p13.2 2012-10-11 2016-10-05 100420342 ENSG00000236040 OTTHUMG00000034492 NG_027127 PGOHUM00000258091 +HGNC:44463 CHIAP2 chitinase, acidic pseudogene 2 pseudogene pseudogene Approved 1p13.2 01p13.2 2012-10-11 2012-10-11 149620 ENSG00000203878 OTTHUMG00000012173 NR_003928 PGOHUM00000258094 +HGNC:44464 CHIAP3 chitinase, acidic pseudogene 3 pseudogene pseudogene Approved 1p13.2 01p13.2 2012-10-11 2012-10-11 100996315 ENSG00000234020 OTTHUMG00000011169 PGOHUM00000258073 +HGNC:1934 CHIC1 cysteine rich hydrophobic domain 1 protein-coding gene gene with protein product Approved Xq13.2 Xq13.2 BRX cysteine-rich hydrophobic domain 1 2000-05-02 2015-11-05 2015-11-05 53344 ENSG00000204116 OTTHUMG00000021835 uc004ebk.5 Y11897 XM_017029582 "CCDS35335|CCDS75993" Q5VXU3 "9321471|11257495" MGI:1344694 RGD:1589722 CHIC1 300922 +HGNC:1935 CHIC2 cysteine rich hydrophobic domain 2 protein-coding gene gene with protein product Approved 4q12 04q12 BTL cysteine-rich hydrophobic domain 2 2000-05-02 2015-11-05 2015-11-05 26511 ENSG00000109220 OTTHUMG00000102101 uc003haj.3 AF159423 XM_006714037 CCDS3493 Q9UKJ5 10477709 MGI:1921527 RGD:1309278 CHIC2 604332 +HGNC:28474 CHID1 chitinase domain containing 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "MGC3234|FLJ42707" Chitinases 816 2005-10-27 2014-11-19 66005 ENSG00000177830 OTTHUMG00000133314 uc010qww.3 AK124697 NM_023947 "CCDS7722|CCDS44510|CCDS44511" Q9BWS9 MGI:1915288 RGD:6490147 CHID1 615692 +HGNC:1936 CHIT1 chitinase 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "CHIT|CHI3" chitotriosidase chitinase 1 (chitotriosidase) Chitinases 816 1996-06-05 2015-11-30 2015-11-30 1118 ENSG00000133063 OTTHUMG00000042126 uc001gzn.3 U29615 NM_003465 "CCDS1436|CCDS58057" Q13231 "9748235|9492324" MGI:1919134 RGD:1305646 CHIT1 600031 +HGNC:1937 CHKA choline kinase alpha protein-coding gene gene with protein product Approved 11q13.2 11q13.2 CKI CHK choline kinase 1994-01-15 2004-04-21 2004-04-19 2016-10-05 1119 ENSG00000110721 OTTHUMG00000167424 uc001onj.4 D10704 NM_001277 "CCDS8178|CCDS8179" P35790 "1618328|15003397" MGI:107760 RGD:61944 CHKA 118491 2.7.1.32 +HGNC:1938 CHKB choline kinase beta protein-coding gene gene with protein product Approved 22q13.33 22q13.33 CHETK CHKL choline kinase-like 1996-12-18 2004-04-19 2004-04-19 2016-10-12 1120 ENSG00000100288 OTTHUMG00000150275 uc003bmv.4 AB029886 NM_005198 CCDS14099 Q9Y259 "9224698|15003397" MGI:1328313 RGD:61826 LRG_855|http://www.lrg-sequence.org/LRG/LRG_855 CHKB 612395 280675 +HGNC:40146 CHKB-AS1 CHKB antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 22q13.33 22q13.33 2013-05-17 2014-11-19 100144603 ENSG00000205559 OTTHUMG00000150208 NR_021492 +HGNC:41998 CHKB-CPT1B CHKB-CPT1B readthrough (NMD candidate) other readthrough Approved 22q13.33 22q13.33 2011-05-31 2013-05-09 2014-11-19 386593 ENSG00000254413 OTTHUMG00000166282 uc062fnj.1 NR_027928.2 +HGNC:1939 CHL1 cell adhesion molecule L1 like protein-coding gene gene with protein product Approved 3p26.3 03p26.3 "CALL|L1CAM2|FLJ44930|MGC132578" "neural cell adhesion molecule|close homolog of L1" "cell adhesion molecule with homology to L1CAM (close homologue of L1)|cell adhesion molecule with homology to L1CAM (close homolog of L1)|cell adhesion molecule L1-like" "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 1998-10-14 2016-01-26 2016-10-05 10752 ENSG00000134121 OTTHUMG00000090601 uc003bot.4 AF002246 NM_006614 "CCDS2556|CCDS58812|CCDS74887" O00533 9799093 MGI:1098266 RGD:620122 CHL1 607416 166396 +HGNC:40148 CHL1-AS1 CHL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p26.3 03p26.3 CHL1 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-18 101927193 ENSG00000234661 OTTHUMG00000154873 uc003box.2 NR_110739 +HGNC:40147 CHL1-AS2 CHL1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p26.3 03p26.3 CHL1 antisense RNA 2 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 642891 ENSG00000224318 OTTHUMG00000154872 uc062gam.1 +HGNC:1940 CHM CHM, Rab escort protein 1 protein-coding gene gene with protein product Approved Xq21.2 Xq21.2 REP-1 "TCD|DXS540" choroideremia (Rab escort protein 1) 2001-06-22 2016-02-25 2016-10-12 1121 ENSG00000188419 OTTHUMG00000021937 uc004eet.3 X78121 NM_000390 "CCDS14454|CCDS48139" P24386 1373238 MGI:892979 RGD:2340 "Mutations of the Rab Escort Protein 1|http://www.retina-international.org/files/sci-news/repmut.htm|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CHM|LRG_699|http://www.lrg-sequence.org/LRG/LRG_699" CHM 300390 119402 +HGNC:1941 CHML CHM like, Rab escort protein 2 protein-coding gene gene with protein product Approved 1q43 01q43 REP-2 choroideremia-like (Rab escort protein 2) 1992-11-03 2016-06-10 2016-06-10 1122 ENSG00000203668 OTTHUMG00000039690 uc001hzd.4 X64728 NM_001821 CCDS31073 P26374 7981670 MGI:101913 RGD:1596201 CHML 118825 +HGNC:8740 CHMP1A charged multivesicular body protein 1A protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "KIAA0047|CHMP1|Vps46A" "PRSM1|PCOLN3" "procollagen (type III) N-endopeptidase|chromatin modifying protein 1A" "Charged multivesicular body proteins|ESCRT-III associated factors" "482|1119" 1993-05-03 2007-03-20 2011-09-21 2015-09-07 5119 ENSG00000131165 OTTHUMG00000169521 uc002fnu.5 U58048 NM_002768 CCDS45552 Q9HD42 "11559748|11559747" MGI:1920159 RGD:1311083 CHMP1A 164010 327388 +HGNC:39514 CHMP1AP1 charged multivesicular body protein 1A pseudogene 1 pseudogene pseudogene Approved 1p35.3 01p35.3 chromatin modifying protein 1A pseudogene 1 2011-02-07 2011-09-21 2011-09-21 646597 ENSG00000226662 OTTHUMG00000003514 NG_007362 PGOHUM00000243947 +HGNC:24287 CHMP1B charged multivesicular body protein 1B protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "CHMP1.5|C18orf2|Vps46B" chromatin modifying protein 1B "Charged multivesicular body proteins|ESCRT-III associated factors" "482|1119" 2005-04-04 2011-09-21 2014-11-18 57132 ENSG00000255112 OTTHUMG00000165820 uc002kqe.4 AF306520 NM_020412 CCDS54180 Q7LBR1 15537668 MGI:1914314 RGD:1593500 CHMP1B 606486 +HGNC:49380 CHMP1B2P charged multivesicular body protein 1B2, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 2013-10-22 2015-01-30 101060146 ENSG00000278530 OTTHUMG00000021903 NR_110646 MGI:1914278 PGOHUM00000258429 +HGNC:30216 CHMP2A charged multivesicular body protein 2A protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "BC-2|CHMP2|VPS2|VPS2A" "putative breast adenocarcinoma marker (32kD)|VPS2 homolog A (S. cerevisiae)" chromatin modifying protein 2A "Charged multivesicular body proteins|ESCRT-III" "482|1118" 2005-04-04 2011-09-21 2014-11-19 27243 ENSG00000130724 OTTHUMG00000183547 uc002qtk.4 AF042384 NM_014453 CCDS12986 O43633 "15173323|11559748" MGI:1916203 RGD:1305050 CHMP2A 610893 +HGNC:24537 CHMP2B charged multivesicular body protein 2B protein-coding gene gene with protein product Approved 3p11.2 03p11.2 "DKFZP564O123|CHMP2.5|VPS2B" VPS2 homolog B (S. cerevisiae) chromatin modifying protein 2B "Charged multivesicular body proteins|ESCRT-III" "482|1118" 2005-04-04 2011-09-21 2016-10-05 25978 ENSG00000083937 OTTHUMG00000158982 uc003dqp.5 BC001553 NM_014043 "CCDS2918|CCDS58840" Q9UQN3 11559748 MGI:1916192 RGD:1306781 CHMP2B 609512 119407 +HGNC:29865 CHMP3 charged multivesicular body protein 3 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "NEDF|CGI-149" VPS24 "vacuolar protein sorting 24 (yeast)|vacuolar protein sorting 24 homolog (S. cerevisiae)" "Charged multivesicular body proteins|ESCRT-III" "482|1118" 2004-03-11 2011-09-21 2011-09-21 2014-11-19 51652 ENSG00000115561 OTTHUMG00000153189 uc002srj.4 AF219226 NM_016079 "CCDS33236|CCDS42707|CCDS54375" Q9Y3E7 "11549700|12878588" MGI:1913950 RGD:708556 610052 +HGNC:20274 CHMP4A charged multivesicular body protein 4A protein-coding gene gene with protein product Approved 14q12 14q12 "HSPC134|VPS32A" C14orf123 "chromosome 14 open reading frame 123|chromatin modifying protein 4A" "Charged multivesicular body proteins|ESCRT-III" "482|1118" 2003-01-17 2005-04-04 2011-09-21 2014-11-19 29082 ENSG00000254505 OTTHUMG00000167036 uc059abq.1 AF212243 NM_014169 CCDS9619 Q9BY43 CHMP4A 610051 +HGNC:16171 CHMP4B charged multivesicular body protein 4B protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "dJ553F4.4|Shax1|SNF7-2|VPS32B" C20orf178 "chromosome 20 open reading frame 178|chromatin modifying protein 4B" "Charged multivesicular body proteins|ESCRT-III" "482|1118" 2001-07-17 2005-04-04 2011-09-21 2015-08-27 128866 ENSG00000101421 OTTHUMG00000032272 uc002xaa.4 AL050349 NM_176812 CCDS13228 Q9H444 14678797 MGI:1922858 RGD:1309846 CHMP4B 610897 139158 +HGNC:43616 CHMP4BP1 charged multivesicular body protein 4B pseudogene 1 pseudogene pseudogene Approved 14q22.3 14q22.3 2011-12-01 2011-12-01 100307126 ENSG00000258469 OTTHUMG00000171034 NG_013059 P59074 PGOHUM00000248177 +HGNC:30599 CHMP4C charged multivesicular body protein 4C protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "MGC22825|Shax3|VPS32C" Snf7 homologue associated with Alix 3 chromatin modifying protein 4C "Charged multivesicular body proteins|ESCRT-III" "482|1118" 2005-04-04 2011-09-21 2015-09-11 92421 ENSG00000164695 OTTHUMG00000164726 uc003ycl.4 AK000049 NM_152284 CCDS6233 Q96CF2 "12860994|14678797" MGI:1913621 RGD:1564543 CHMP4C 610899 +HGNC:26942 CHMP5 charged multivesicular body protein 5 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "HSPC177|CGI-34|Vps60" "C9orf83|SNF7DC2" "chromosome 9 open reading frame 83|chromatin modifying protein 5" "Charged multivesicular body proteins|ESCRT-III associated factors" "482|1119" 2005-04-04 2005-08-09 2011-09-21 2014-11-19 51510 ENSG00000086065 OTTHUMG00000019765 uc003zsm.5 AF132968 NM_016410 "CCDS6537|CCDS56569" Q9NZZ3 "15644320|11559748" MGI:1924209 RGD:1305968 CHMP5 610900 +HGNC:25675 CHMP6 charged multivesicular body protein 6 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FLJ11749|VPS20" chromatin modifying protein 6 "Charged multivesicular body proteins|ESCRT-III" "482|1118" 2005-04-04 2011-09-21 2014-11-18 79643 ENSG00000176108 OTTHUMG00000177645 uc002jyw.4 BC010108 NM_024591 CCDS11774 Q96FZ7 "11559748|15511219" MGI:3583942 RGD:1565325 CHMP6 610901 +HGNC:28439 CHMP7 charged multivesicular body protein 7 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 MGC29816 CHMP family, member 7 "Charged multivesicular body proteins|ESCRT-III associated factors" "482|1119" 2005-04-04 2011-09-21 2016-10-05 91782 ENSG00000147457 OTTHUMG00000131785 uc003xdc.3 BC019110 NM_152272 CCDS6040 Q8WUX9 16856878 MGI:1913922 RGD:1308779 CHMP7 611130 +HGNC:1943 CHN1 chimerin 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "RhoGAP2|ARHGAP2|n-chimerin" "Chimerin 1 (GTPase-activating protein, rho, 2)|chimaerin 1" "CHN|DURS2" "Duane retraction syndrome 2|chimerin (chimaerin) 1" "Rho GTPase activating proteins|SH2 domain containing" "721|741" 1991-07-12 2012-10-17 2016-10-05 1123 ENSG00000128656 OTTHUMG00000154225 uc002uji.4 NM_001822 "CCDS46454|CCDS46455|CCDS56147" P15882 "2299665|15013773|18653847" MGI:1915674 RGD:620139 CHN1 118423 182553 +HGNC:1944 CHN2 chimerin 2 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "ARHGAP3|RhoGAP3" "beta chimerin|chimaerin 2" chimerin (chimaerin) 2 "Rho GTPase activating proteins|SH2 domain containing" "721|741" 1997-08-28 2012-10-17 2016-10-05 1124 ENSG00000106069 OTTHUMG00000023063 uc003szz.4 L29126 NM_004067 "CCDS5420|CCDS47566|CCDS78217|CCDS78218|CCDS78219|CCDS78220" P52757 8175705 MGI:1917243 RGD:620140 CHN2 602857 +HGNC:17807 CHODL chondrolectin protein-coding gene gene with protein product Approved 21q21.1 21q21.1 "FLJ12627|PRED12|MT75" C21orf68 chromosome 21 open reading frame 68 C-type lectin domain containing 1298 2001-12-14 2002-07-04 2016-10-05 140578 ENSG00000154645 OTTHUMG00000074519 uc002ykv.5 AF257472 NM_024944 "CCDS13570|CCDS56208|CCDS56209|CCDS56210" Q9H9P2 12079284 MGI:2179069 RGD:1309885 CHODL 607247 +HGNC:1279 CHODL-AS1 CHODL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 "C21orf39|NCRNA00157" "chromosome 21 open reading frame 39|non-protein coding RNA 157|CHODL antisense RNA 1 (non-protein coding)" 2000-05-23 2011-08-11 2012-08-15 2012-10-12 54075 ENSG00000231755 OTTHUMG00000074500 uc011aca.2 NR_024354 +HGNC:14525 CHORDC1 cysteine and histidine rich domain containing 1 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 "CHP1|CHP-1" morgana cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1 2001-02-28 2015-11-05 2015-11-18 26973 ENSG00000110172 OTTHUMG00000167305 uc001pdg.4 AF192466 NM_012124 "CCDS8289|CCDS44705" Q9UHD1 10571178 MGI:1914167 RGD:1304679 CHORDC1 604353 +HGNC:20050 CHORDC2P cysteine and histidine rich domain containing 2, pseudogene pseudogene pseudogene Approved 14q32.11 14q32.11 "cysteine and histidine-rich domain (CHORD)-containing 2 pseudogene|cysteine and histidine-rich domain (CHORD) containing 2 pseudogene" 2003-01-13 2015-11-05 2015-11-05 317775 ENSG00000259050 OTTHUMG00000170976 NG_002473 PGOHUM00000247882 +HGNC:17433 CHP1 calcineurin like EF-hand protein 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "Sid470p|CHP|SLC9A1BP|p22|p24" calcineurin homologous protein EF-hand domain containing 863 2012-05-16 2016-01-29 2016-10-05 11261 ENSG00000187446 OTTHUMG00000130233 uc001znl.4 NM_007236 CCDS10073 Q99653 "15987692|20720019" MGI:1927185 RGD:620447 606988 +HGNC:24927 CHP2 calcineurin like EF-hand protein 2 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 EF-hand domain containing 863 2012-05-16 2016-01-29 2016-01-29 63928 ENSG00000166869 OTTHUMG00000131611 uc002dmb.2 NM_022097 CCDS10617 O43745 12226101 MGI:1917511 RGD:727796 CHP2 +HGNC:24291 CHPF chondroitin polymerizing factor protein-coding gene gene with protein product Approved 2q35 02q35 "CSS2|CHSY2" chondroitin sulfate synthase 2 "Beta 4-glycosyltransferases|Beta 3-glycosyltransferases" "425|426" 2008-01-29 2015-09-11 79586 ENSG00000123989 OTTHUMG00000058929 uc002vmc.5 BC008878 NM_024536 "CCDS2443|CCDS56169" Q8IZ52 "11230166|12716890" MGI:106576 RGD:1359458 CHPF 610405 "2.4.1.175|2.4.1.226" +HGNC:29270 CHPF2 chondroitin polymerizing factor 2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "KIAA1402|ChSy-3|CSGlcA-T" "Beta 4-glycosyltransferases|Beta 3-glycosyltransferases" "425|426" 2009-07-15 2015-09-11 54480 ENSG00000033100 OTTHUMG00000157380 uc003wjr.3 AB037823 NM_019015 "CCDS34779|CCDS64803" Q9P2E5 "10718198|12145278|18316376" MGI:1917522 RGD:1306404 CHPF2 608037 2.4.1.226 +HGNC:17852 CHPT1 choline phosphotransferase 1 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 CPT1 phosphatidylcholine synthesizing enzyme 2002-01-21 2016-01-15 56994 ENSG00000111666 OTTHUMG00000170443 uc001tin.4 NM_020244 CCDS9086 Q8WUD6 10893425 MGI:2384841 RGD:1359283 CHPT1 616747 2.7.8.2 +HGNC:1945 CHR chromate resistance; sulfate transport other unknown Approved 5q35 05q35 2001-06-22 2012-10-02 1125 "7177110|9732752" 118840 +HGNC:13544 CHRAC1 chromatin accessibility complex 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "CHRAC15|YCL1" histone-fold protein CHRAC15 2000-11-09 2008-08-07 54108 ENSG00000104472 OTTHUMG00000164207 uc003yvl.4 AF226076 NM_017444 CCDS6379 Q9NRG0 "10880450|11000277" MGI:2135796 RGD:1309321 CHRAC1 607268 +HGNC:1949 CHRD chordin protein-coding gene gene with protein product Approved 3q27.1 03q27.1 1998-11-06 2016-10-05 8646 ENSG00000090539 OTTHUMG00000141267 uc003fov.3 AF076612 NM_003741 "CCDS3266|CCDS77868" Q9H2X0 "9782094|11472837" MGI:1313268 RGD:620181 CHRD 603475 +HGNC:29861 CHRDL1 chordin like 1 protein-coding gene gene with protein product Approved Xq23 Xq23 "NRLN1|CHL" MGC1 megalocornea 1 (X-linked) 2004-01-28 2016-06-21 2016-06-21 91851 ENSG00000101938 OTTHUMG00000022199 uc065arx.1 AL049176 NM_145234 "CCDS14553|CCDS48148|CCDS48149|CCDS48150" Q9BU40 "11441185|11118896|22284829" MGI:1933172 RGD:735215 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CHRDL1 CHRDL1 300350 292376 +HGNC:24168 CHRDL2 chordin like 2 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 BNF1 2004-01-28 2016-06-21 2016-06-21 25884 ENSG00000054938 OTTHUMG00000165623 uc001ovh.5 AL110168 NM_015424 "CCDS8234|CCDS60893" Q6WN34 "12853144|12975309" MGI:1916371 RGD:1306179 CHRDL2 613127 +HGNC:15781 CHRFAM7A CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion protein-coding gene gene with protein product Approved 15q13.2 15q13.2 "D-10|CHRNA7-DR1" CHRNA7 (cholinergic receptor, nicotinic, alpha 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion 2001-06-29 2016-03-03 2016-03-03 89832 ENSG00000166664 OTTHUMG00000175645 uc001zdt.2 AF029838 NM_148911 "CCDS32184|CCDS42008" Q494W8 11829490 CHRFAM7A 609756 +HGNC:37766 CHRFAM7AP1 CHRFAM7A pseudogene 1 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-02-16 2016-10-05 359999 NG_004755 12815422 +HGNC:23937 CHRFAM7AP2 CHRFAM7A pseudogene 2 pseudogene pseudogene Approved Yq11.2 Yq11.2 2010-02-16 2014-11-19 359998 NG_002919 12815422 +HGNC:1950 CHRM1 cholinergic receptor muscarinic 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 acetylcholine receptor, muscarinic 1 Cholinergic receptors muscarinic 180 1988-08-03 2016-03-03 2016-03-03 1128 ENSG00000168539 OTTHUMG00000167765 uc001nwi.4 Y00508 NM_000738 CCDS8040 P11229 MGI:88396 RGD:2342 CHRM1 118510 objectId:13 +HGNC:1951 CHRM2 cholinergic receptor muscarinic 2 protein-coding gene gene with protein product Approved 7q33 07q33 acetylcholine receptor, muscarinic 2 Cholinergic receptors muscarinic 180 1988-08-04 2016-03-03 2016-10-12 1129 ENSG00000181072 OTTHUMG00000155658 uc003vtg.2 XM_011515769 CCDS5843 P08172 MGI:88397 RGD:620023 LRG_405|http://www.lrg-sequence.org/LRG/LRG_405 CHRM2 118493 objectId:14 +HGNC:1952 CHRM3 cholinergic receptor muscarinic 3 protein-coding gene gene with protein product Approved 1q43 01q43 acetylcholine receptor, muscarinic 3 Cholinergic receptors muscarinic 180 1988-08-04 2016-03-03 2016-03-03 1131 ENSG00000133019 OTTHUMG00000039649 uc001hyp.4 U29589 NM_000740 CCDS1616 P20309 MGI:88398 RGD:2343 CHRM3 118494 299148 objectId:15 +HGNC:40150 CHRM3-AS1 CHRM3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q43 01q43 CHRM3 antisense RNA 1 (non-protein coding) 2012-02-09 2012-08-15 2014-11-19 100873984 ENSG00000234601 OTTHUMG00000039650 uc031vtb.2 "BX116264|AI672277" NR_046582 +HGNC:43725 CHRM3-AS2 CHRM3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 1q43 01q43 CHRM3 antisense RNA 2 (non-protein coding) 2012-02-09 2012-08-15 2012-10-12 100506915 ENSG00000233355 OTTHUMG00000039648 uc057qrj.1 "AL832284|BI836697" NR_103776 +HGNC:1953 CHRM4 cholinergic receptor muscarinic 4 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 acetylcholine receptor, muscarinic 4 Cholinergic receptors muscarinic 180 1989-04-21 2016-03-03 2016-10-05 1132 ENSG00000180720 OTTHUMG00000154371 uc001nct.2 M16405 NM_000741 CCDS44581 P08173 1577490 MGI:88399 RGD:2344 CHRM4 118495 objectId:16 +HGNC:1954 CHRM5 cholinergic receptor muscarinic 5 protein-coding gene gene with protein product Approved 15q14 15q14 acetylcholine receptor, muscarinic 5 Cholinergic receptors muscarinic 180 1989-04-21 2016-03-03 2016-10-05 1133 ENSG00000184984 OTTHUMG00000129369 uc001zhk.2 NM_001320917 CCDS10031 P08912 MGI:109248 RGD:620027 CHRM5 118496 objectId:17 +HGNC:1955 CHRNA1 cholinergic receptor nicotinic alpha 1 subunit protein-coding gene gene with protein product Approved 2q31.1 02q31.1 acetylcholine receptor, nicotinic, alpha 1 (muscle) CHRNA "cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)|cholinergic receptor, nicotinic, alpha 1 (muscle)|cholinergic receptor, nicotinic alpha 1" Cholinergic receptors nicotinic subunits 173 1989-05-25 2016-02-04 2016-02-04 1134 ENSG00000138435 OTTHUMG00000132357 uc002uje.3 Y00762 XM_017003256 "CCDS2261|CCDS33331" P02708 MGI:87885 RGD:69277 CHRNA1 100690 119411 objectId:462 +HGNC:1956 CHRNA2 cholinergic receptor nicotinic alpha 2 subunit protein-coding gene gene with protein product Approved 8p21.2 08p21.2 acetylcholine receptor, nicotinic, alpha 2 (neuronal) "cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)|cholinergic receptor, nicotinic, alpha 2 (neuronal)|cholinergic receptor, nicotinic alpha 2" Cholinergic receptors nicotinic subunits 173 1990-05-11 2016-02-04 2016-10-05 1135 ENSG00000120903 OTTHUMG00000102083 uc010lur.5 U62431 XM_005273397 "CCDS6059|CCDS64856" Q15822 1505988 MGI:87886 RGD:621533 CHRNA2 118502 159345 objectId:463 +HGNC:1957 CHRNA3 cholinergic receptor nicotinic alpha 3 subunit protein-coding gene gene with protein product Approved 15q25.1 15q25.1 acetylcholine receptor, nicotinic, alpha 3 (neuronal) "cholinergic receptor, nicotinic, alpha polypeptide 3|cholinergic receptor, nicotinic, alpha 3 (neuronal)|cholinergic receptor, nicotinic alpha 3" Cholinergic receptors nicotinic subunits 173 1990-05-11 2016-02-04 2016-10-05 1136 ENSG00000080644 OTTHUMG00000143863 uc002bec.4 XM_006720382 "CCDS10305|CCDS53964" P32297 2004777 MGI:87887 RGD:2345 CHRNA3 118503 objectId:464 +HGNC:1958 CHRNA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding gene gene with protein product Approved 20q13.33 20q13.33 BFNC acetylcholine receptor, nicotinic, alpha 4 (neuronal) "EBN|EBN1" "cholinergic receptor, nicotinic, alpha polypeptide 4|cholinergic receptor, nicotinic, alpha 4 (neuronal)|cholinergic receptor, nicotinic alpha 4" Cholinergic receptors nicotinic subunits 173 1990-05-11 2016-02-04 2016-02-04 1137 ENSG00000101204 OTTHUMG00000033080 uc002yes.4 XM_017027624 CCDS13517 P43681 1505988 MGI:87888 RGD:2346 CHRNA4 118504 119414 objectId:465 +HGNC:1959 CHRNA5 cholinergic receptor nicotinic alpha 5 subunit protein-coding gene gene with protein product Approved 15q25.1 15q25.1 acetylcholine receptor, nicotinic, alpha 5 (neuronal) "cholinergic receptor, nicotinic, alpha polypeptide 5|cholinergic receptor, nicotinic, alpha 5 (neuronal)|cholinergic receptor, nicotinic alpha 5" Cholinergic receptors nicotinic subunits 173 1990-05-11 2016-02-04 2016-10-05 1138 ENSG00000169684 OTTHUMG00000143858 uc002bdy.3 XR_001751067 "CCDS10304|CCDS76786" P30532 2004777 MGI:87889 RGD:2347 CHRNA5 118505 objectId:466 +HGNC:15963 CHRNA6 cholinergic receptor nicotinic alpha 6 subunit protein-coding gene gene with protein product Approved 8p11.21 08p11.21 acetylcholine receptor, nicotinic, alpha 6 (neuronal) "cholinergic receptor, nicotinic, alpha polypeptide 6|cholinergic receptor, nicotinic, alpha 6 (neuronal)|cholinergic receptor, nicotinic alpha 6" Cholinergic receptors nicotinic subunits 173 2001-06-25 2016-02-04 2016-10-05 8973 ENSG00000147434 OTTHUMG00000165275 uc003xpj.5 U62435 NM_004198 "CCDS6135|CCDS56536" Q15825 8906617 MGI:106213 RGD:69281 CHRNA6 606888 objectId:467 +HGNC:1960 CHRNA7 cholinergic receptor nicotinic alpha 7 subunit protein-coding gene gene with protein product Approved 15q13.3 15q13.3 acetylcholine receptor, nicotinic, alpha 7 (neuronal) "cholinergic receptor, nicotinic, alpha polypeptide 7|cholinergic receptor, nicotinic, alpha 7 (neuronal)|cholinergic receptor, nicotinic alpha 7" Cholinergic receptors nicotinic subunits 173 1993-05-25 2016-02-04 2016-02-04 1139 ENSG00000175344 OTTHUMG00000129285 uc001zft.5 Z23141 XM_011521176 "CCDS10027|CCDS53924" P36544 8188270 MGI:99779 RGD:2348 CHRNA7 118511 264663 objectId:468 +HGNC:14079 CHRNA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding gene gene with protein product Approved 4p14 04p14 NACHRA9 acetylcholine receptor, nicotinic, alpha 9 (neuronal) "cholinergic receptor, nicotinic, alpha polypeptide 9|cholinergic receptor, nicotinic, alpha 9 (neuronal)|cholinergic receptor, nicotinic alpha 9" Cholinergic receptors nicotinic subunits 173 2000-11-29 2016-02-04 2016-02-04 55584 ENSG00000174343 OTTHUMG00000099375 uc003gva.2 AF227732 NM_017581 CCDS3459 Q9UGM1 MGI:1202403 RGD:621534 CHRNA9 605116 objectId:469 +HGNC:13800 CHRNA10 cholinergic receptor nicotinic alpha 10 subunit protein-coding gene gene with protein product Approved 11p15.4 11p15.4 acetylcholine receptor, nicotinic, alpha 10 (neuronal) "cholinergic receptor, nicotinic, alpha polypeptide 10|cholinergic receptor, nicotinic, alpha 10 (neuronal)|cholinergic receptor, nicotinic alpha 10" Cholinergic receptors nicotinic subunits 173 2000-11-28 2016-02-04 2016-10-05 57053 ENSG00000129749 OTTHUMG00000011844 uc001lyf.3 AF199235 NM_001303034 CCDS7745 Q9GZZ6 MGI:3609260 RGD:620142 CHRNA10 606372 objectId:470 +HGNC:1961 CHRNB1 cholinergic receptor nicotinic beta 1 subunit protein-coding gene gene with protein product Approved 17p13.1 17p13.1 acetylcholine receptor, nicotinic, beta 1 (muscle) CHRNB "cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)|cholinergic receptor, nicotinic, beta 1 (muscle)|cholinergic receptor, nicotinic beta 1" Cholinergic receptors nicotinic subunits 173 1989-05-25 2016-02-04 2016-02-04 1140 ENSG00000170175 OTTHUMG00000108139 uc002ghb.4 X14830 NM_000747 CCDS11106 P11230 MGI:87890 RGD:2349 CHRNB1 100710 119419 objectId:471 +HGNC:1962 CHRNB2 cholinergic receptor nicotinic beta 2 subunit protein-coding gene gene with protein product Approved 1q21.3 01q21.3 acetylcholine receptor, nicotinic, beta 2 (neuronal) "cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)|cholinergic receptor, nicotinic, beta 2 (neuronal)|cholinergic receptor, nicotinic beta 2" Cholinergic receptors nicotinic subunits 173 1990-05-11 2016-02-04 2016-02-04 1141 ENSG00000160716 OTTHUMG00000037262 uc001ffg.4 U62437 NM_000748 CCDS1070 P17787 1505988 MGI:87891 RGD:2350 CHRNB2 118507 165966 objectId:472 +HGNC:1963 CHRNB3 cholinergic receptor nicotinic beta 3 subunit protein-coding gene gene with protein product Approved 8p11.21 08p11.21 acetylcholine receptor, nicotinic, beta 3 (neuronal) "cholinergic receptor, nicotinic, beta polypeptide 3|cholinergic receptor, nicotinic, beta 3 (neuronal)|cholinergic receptor, nicotinic beta 3" Cholinergic receptors nicotinic subunits 173 1990-05-11 2016-02-04 2016-02-04 1142 ENSG00000147432 OTTHUMG00000165262 uc003xpi.2 U62438 XM_011544390 CCDS6134 Q05901 1505988 MGI:106212 RGD:621544 CHRNB3 118508 objectId:473 +HGNC:1964 CHRNB4 cholinergic receptor nicotinic beta 4 subunit protein-coding gene gene with protein product Approved 15q25.1 15q25.1 acetylcholine receptor, nicotinic, beta 4 (neuronal) "cholinergic receptor, nicotinic, beta polypeptide 4|cholinergic receptor, nicotinic, beta 4 (neuronal)|cholinergic receptor, nicotinic beta 4" Cholinergic receptors nicotinic subunits 173 1990-05-11 2016-02-04 2016-10-05 1143 ENSG00000117971 OTTHUMG00000143860 uc002bed.2 U48861 XM_011521186 "CCDS10306|CCDS58392" P30926 2004777 MGI:87892 RGD:2351 CHRNB4 118509 objectId:474 +HGNC:1965 CHRND cholinergic receptor nicotinic delta subunit protein-coding gene gene with protein product Approved 2q37.1 02q37.1 acetylcholine receptor, nicotinic, delta (muscle) ACHRD "cholinergic receptor, nicotinic, delta|cholinergic receptor, nicotinic, delta (muscle)|cholinergic receptor, nicotinic delta" Cholinergic receptors nicotinic subunits 173 1986-01-01 2016-02-04 2016-02-04 1144 ENSG00000135902 OTTHUMG00000133261 uc002vsw.5 X55019 XM_011510524 "CCDS2494|CCDS58754" Q07001 MGI:87893 RGD:2352 CHRND 100720 119422 objectId:476 +HGNC:1966 CHRNE cholinergic receptor nicotinic epsilon subunit protein-coding gene gene with protein product Approved 17p13.2 17p13.2 ACHRE acetylcholine receptor, nicotinic, epsilon (muscle) "cholinergic receptor, nicotinic, epsilon|cholinergic receptor, nicotinic, epsilon (muscle)|cholinergic receptor, nicotinic epsilon" Cholinergic receptors nicotinic subunits 173 1992-04-23 2016-02-04 2016-02-04 1145 ENSG00000108556 OTTHUMG00000090778 uc002fzk.2 X66403 XM_017024115 CCDS11058 Q04844 7688301 MGI:87894 RGD:2353 CHRNE 100725 119425 objectId:477 +HGNC:1967 CHRNG cholinergic receptor nicotinic gamma subunit protein-coding gene gene with protein product Approved 2q37.1 02q37.1 acetylcholine receptor, nicotinic, gamma (muscle) ACHRG "cholinergic receptor, nicotinic, gamma|cholinergic receptor, nicotinic, gamma (muscle)|cholinergic receptor, nicotinic gamma" Cholinergic receptors nicotinic subunits 173 2001-06-22 2016-02-04 2016-02-04 1146 ENSG00000196811 OTTHUMG00000153327 uc002vsx.1 X01715 NM_005199 CCDS33400 P07510 MGI:87895 RGD:2354 LOVD - Leiden Open Variation Database|https://grenada.lumc.nl/LOVD2/shared1/home.php?select_db=CHRNG CHRNG 100730 119428 objectId:475 +HGNC:1969 CHST1 carbohydrate sulfotransferase 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "C6ST|KSGal6ST" Keratan sulfotransferase carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 Sulfotransferases, membrane bound 763 1998-10-02 2016-02-24 2016-02-24 8534 ENSG00000175264 OTTHUMG00000166513 uc001mys.3 U65637 NM_003654 CCDS7913 O43916 "9405439|9639683" MGI:1924219 RGD:1308142 CHST1 603797 2.8.2.21 +HGNC:1970 CHST2 carbohydrate sulfotransferase 2 protein-coding gene gene with protein product Approved 3q24 03q24 C6ST carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2 Sulfotransferases, membrane bound 763 1999-04-09 2016-03-18 2016-03-18 9435 ENSG00000175040 OTTHUMG00000159351 uc003evm.4 BC042160 NM_004267 CCDS3129 Q9Y4C5 10049591 MGI:1891160 RGD:1306988 CHST2 603798 2.8.2- +HGNC:1971 CHST3 carbohydrate sulfotransferase 3 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "C6ST|C6ST1" chondroitin 6 sulfotransferase 1 carbohydrate (chondroitin 6) sulfotransferase 3 Sulfotransferases, membrane bound 763 1999-04-15 2016-05-04 2016-05-04 9469 ENSG00000122863 OTTHUMG00000018431 uc001jsn.4 AB017915 NM_004273 CCDS7312 Q7LGC8 "9883891|9714738" MGI:1858224 RGD:620355 CHST3 603799 119431 2.8.2.17 +HGNC:1972 CHST4 carbohydrate sulfotransferase 4 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 "HEC-GLCNAC-6-ST|LSST" carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4 Sulfotransferases, membrane bound 763 1999-12-07 2016-03-18 2016-03-18 10164 ENSG00000140835 OTTHUMG00000137592 uc002fan.4 AF131235 NM_005769 CCDS10902 Q8NCG5 10330415 MGI:1349479 RGD:1310798 CHST4 2.8.2.- +HGNC:1973 CHST5 carbohydrate sulfotransferase 5 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "I-GLCNAC-6-ST|FLJ22167" carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 Sulfotransferases, membrane bound 763 1999-12-07 2016-03-18 2016-03-18 23563 ENSG00000135702 OTTHUMG00000137610 uc002fei.4 AF176839 NM_012126 CCDS10919 Q9GZS9 "10491328|11017086" MGI:1931825 CHST5 604817 2.8.2- +HGNC:6938 CHST6 carbohydrate sulfotransferase 6 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 MCDC1 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 Sulfotransferases, membrane bound 763 1992-02-17 2016-03-18 2016-10-05 4166 ENSG00000183196 OTTHUMG00000137612 uc002fef.4 AF280086 NM_021615 CCDS10918 Q9GZX3 "8644739|11017086" MGI:1931825 RGD:1561144 CHST6 605294 119435 2.8.2- +HGNC:13817 CHST7 carbohydrate sulfotransferase 7 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "C6ST-2|C6ST2" carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7 Sulfotransferases, membrane bound 763 2000-11-09 2016-03-18 2016-03-18 56548 ENSG00000147119 OTTHUMG00000021423 uc004dgt.5 AB040711 NM_019886 CCDS14268 Q9NS84 10781596 MGI:1891767 RGD:1303028 CHST7 300375 "2.8.2.17|2.8.2-" +HGNC:15993 CHST8 carbohydrate sulfotransferase 8 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 GALNAC-4-ST1 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 Sulfotransferases, membrane bound 763 2001-06-27 2016-03-18 2016-10-05 64377 ENSG00000124302 OTTHUMG00000180472 uc002nus.5 AB047801 NM_022467 CCDS12433 Q9H2A9 "10988300|11001942" MGI:1916197 RGD:1308979 CHST8 610190 363954 2.8.2.- +HGNC:19898 CHST9 carbohydrate sulfotransferase 9 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "GALNAC4ST-2|GALNAC-4-ST2" carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 Sulfotransferases, membrane bound 763 2002-11-29 2016-03-18 2016-03-18 83539 ENSG00000154080 OTTHUMG00000179469 uc002kwe.5 AF239821 NM_031422 "CCDS42422|CCDS58618" Q7L1S5 "11139592|11445554" MGI:1918617 RGD:1307302 CHST9 610191 2.8.1- +HGNC:19650 CHST10 carbohydrate sulfotransferase 10 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 HNK-1ST Sulfotransferases, membrane bound 763 2003-03-11 2016-03-18 9486 ENSG00000115526 OTTHUMG00000130669 uc002tam.4 BC010441 NM_004854 CCDS2047 O43529 12080076 MGI:2138283 RGD:621216 CHST10 606376 2.8.2- +HGNC:17422 CHST11 carbohydrate sulfotransferase 11 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "C4ST1|C4St-1|C4ST|HSA269537" chondroitin 4-sulfotransferase 1 carbohydrate (chondroitin 4) sulfotransferase 11 Sulfotransferases, membrane bound 763 2003-08-06 2016-05-09 2016-05-09 50515 ENSG00000171310 OTTHUMG00000169803 uc001tkz.4 AB042326 NM_018413 "CCDS9099|CCDS55878" Q9NPF2 10781601 MGI:1927166 RGD:1308400 CHST11 610128 2.8.2.5 +HGNC:17423 CHST12 carbohydrate sulfotransferase 12 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "C4S-2|C4ST2" chondroitin 4-sulfotransferase 2 carbohydrate (chondroitin 4) sulfotransferase 12 Sulfotransferases, membrane bound 763 2003-08-06 2016-05-09 2016-10-05 55501 ENSG00000136213 OTTHUMG00000023849 uc003smc.4 AF239822 NM_018641 CCDS5333 Q9NRB3 10781601 MGI:1929064 RGD:1308214 CHST12 610129 2.8.2.5 +HGNC:21755 CHST13 carbohydrate sulfotransferase 13 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 C4ST3 chondroitin 4-sulfotransferase 3 carbohydrate (chondroitin 4) sulfotransferase 13 Sulfotransferases, membrane bound 763 2003-08-06 2016-05-09 2016-05-09 166012 ENSG00000180767 OTTHUMG00000162721 uc003eja.4 AY120869 NM_152889 CCDS3039 Q8NET6 12080076 MGI:1919047 RGD:1562825 CHST13 610124 2.8.2.5 +HGNC:24464 CHST14 carbohydrate sulfotransferase 14 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "HD4ST|D4ST-1" D4ST1 "dermatan 4 sulfotransferase 1|carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14|carbohydrate (dermatan 4) sulfotransferase 14" Sulfotransferases, membrane bound 763 2004-02-24 2007-03-27 2016-05-09 2016-10-12 113189 ENSG00000169105 OTTHUMG00000129985 uc001zlw.4 AF401222 NM_130468 CCDS10059 Q8NCH0 11470797 MGI:1919386 RGD:1585023 LRG_600|http://www.lrg-sequence.org/LRG/LRG_600 CHST14 608429 226058 2.8.2.35 +HGNC:18137 CHST15 carbohydrate sulfotransferase 15 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "GALNAC4S-6ST|BRAG|KIAA0598" "B cell RAG associated protein|N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase" carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15 Sulfotransferases, membrane bound 763 2009-05-20 2016-05-09 2016-10-05 51363 ENSG00000182022 OTTHUMG00000019208 uc001lhn.4 AB011170 NM_015892 "CCDS7638|CCDS55731" Q7LFX5 "9628581|9754571|11572857" MGI:1924840 RGD:628881 CHST15 608277 2.8.2.33 +HGNC:17198 CHSY1 chondroitin sulfate synthase 1 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "KIAA0990|CSS1" carbohydrate (chondroitin) synthase 1 "Beta 4-glycosyltransferases|Beta 3-glycosyltransferases" "425|426" 2001-12-19 2008-01-24 2008-01-24 2015-09-11 22856 ENSG00000131873 OTTHUMG00000149873 uc021sxt.1 AB023207 NM_014918 CCDS10390 Q86X52 11514575 MGI:2681120 RGD:1311904 CHSY1 608183 365084 "2.4.1.175|2.4.1.226" +HGNC:24293 CHSY3 chondroitin sulfate synthase 3 protein-coding gene gene with protein product Approved 5q23.3 05q23.3 "CSS3|CHSY-2" "Beta 4-glycosyltransferases|Beta 3-glycosyltransferases" "425|426" 2008-01-24 2016-10-05 337876 ENSG00000198108 OTTHUMG00000163043 uc003kvd.4 AB086062 NM_175856 CCDS34223 Q70JA7 12907687 MGI:1926173 RGD:1560819 CHSY3 609963 "2.4.1.175|2.4.1.226" +HGNC:24353 CHTF8 chromosome transmission fidelity factor 8 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ20400|CTF8|DERPC" CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) 2009-01-14 2015-06-19 2015-06-19 54921 ENSG00000168802 OTTHUMG00000163909 uc002ewp.3 NM_017804 CCDS42185 "P0CG12|P0CG13" 12766176 MGI:2443370 RGD:1306894 CHTF8 613202 +HGNC:35443 CHTF8P1 chromosome transmission fidelity factor 8 pseudogene 1 pseudogene pseudogene Approved Xp11.3 Xp11.3 CHTF8P "CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) pseudogene|CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae) pseudogene 1|CHTF8 pseudogene 1" 2009-01-14 2010-01-19 2015-06-19 2015-06-19 677883 ENSG00000233543 OTTHUMG00000021397 NG_005539 +HGNC:18435 CHTF18 chromosome transmission fidelity factor 18 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "CHL12|C321D2.4|Ctf18" C16orf41 "chromosome 16 open reading frame 41|CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)" AAA ATPases 413 2003-04-04 2015-06-19 2015-06-19 63922 ENSG00000127586 OTTHUMG00000047838 uc002cke.4 BC018184 NM_022092 CCDS45371 Q8WVB6 12171929 MGI:2384887 RGD:1310473 CHTF18 613201 +HGNC:24511 CHTOP chromatin target of PRMT1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "DKFZP547E1010|SRAG|FOP" "small protein rich in arginine and glycine|Friend of Prmt1" C1orf77 chromosome 1 open reading frame 77 2005-05-20 2011-03-24 2011-03-24 2014-11-19 26097 ENSG00000160679 OTTHUMG00000037052 uc001fcm.3 NM_015607 "CCDS1048|CCDS72917|CCDS72918|CCDS81380" Q9Y3Y2 19254951 MGI:1913761 RGD:1359407 CHTOP 614206 +HGNC:1974 CHUK conserved helix-loop-helix ubiquitous kinase protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "IKK1|IKK-alpha|IkBKA|NFKBIKA|IKKA" TCF16 1995-03-15 2016-10-05 1147 ENSG00000213341 OTTHUMG00000018899 uc001kqp.4 AF009225 NM_001278 CCDS7488 O15111 "7558004|16902410" MGI:99484 RGD:1306661 CHUK 600664 objectId:1989 +HGNC:20099 CHURC1 churchill domain containing 1 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "My015|FLJ33064" C14orf52 2002-12-18 2004-05-07 2004-05-05 2016-04-25 91612 ENSG00000258289 OTTHUMG00000170218 uc059ckt.1 AF060510 NM_145165 "CCDS32101|CCDS55921|CCDS55922" Q8WUH1 MGI:1923684 RGD:1305116 CHURC1 608577 +HGNC:42960 CHURC1-FNTB CHURC1-FNTB readthrough other readthrough Approved 14q23.3 14q23.3 2011-09-28 2014-11-19 100529261 ENSG00000125954 OTTHUMG00000170219 uc059ckz.1 NM_001202558 +HGNC:14280 CIAO1 cytosolic iron-sulfur assembly component 1 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 CIA1 WDR39 "WD repeat domain 39|cytosolic iron-sulfur protein assembly 1 homolog (S. cerevisiae)|cytosolic iron-sulfur protein assembly 1" "WD repeat domain containing|Cytosolic iron-sulfur assembly components" "362|1028" 2005-01-18 2006-11-23 2014-01-13 2016-10-05 9391 ENSG00000144021 OTTHUMG00000130452 uc002svs.4 U63810 NM_004804 CCDS2019 O76071 "9556563|10493829" MGI:1346998 RGD:1307285 CIAO1 604333 +HGNC:28050 CIAPIN1 cytokine induced apoptosis inhibitor 1 protein-coding gene gene with protein product Approved 16q21 16q21 Anamorsin 2004-08-16 2014-11-18 57019 ENSG00000005194 OTTHUMG00000133457 uc002ell.2 AF248964 NM_020313 "CCDS10781|CCDS76876|CCDS76877" Q6FI81 "10493829|11230166" MGI:1922083 RGD:1549737 CIAPIN1 608943 +HGNC:31087 CIAPIN1P cytokine induced apoptosis inhibitor 1 pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 HsT2384 2005-10-06 2014-11-19 728599 ENSG00000263846 OTTHUMG00000179434 NG_008808 PGOHUM00000235033 +HGNC:25200 CIART circadian associated repressor of transcription protein-coding gene gene with protein product Approved 1q21.2 01q21.2 BC017397 C1orf51 chromosome 1 open reading frame 51 2005-02-02 2014-01-30 2014-01-30 2014-11-19 148523 ENSG00000159208 OTTHUMG00000012548 BC047238 NM_144697 "CCDS949|CCDS72906" Q8N365 24385426 MGI:2684975 RGD:1566380 615782 +HGNC:16920 CIB1 calcium and integrin binding 1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "SIP2-28|CIB|KIP" calmyrin EF-hand domain containing 863 2002-05-08 2015-11-23 2016-10-05 10519 ENSG00000185043 OTTHUMG00000149808 uc002bpb.5 U82226 NM_006384 "CCDS10360|CCDS73781" Q99828 "9030514|10826701" MGI:1344418 RGD:620133 CIB1 602293 +HGNC:24579 CIB2 calcium and integrin binding family member 2 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 KIP2 "DFNB48|USH1J" "deafness, autosomal recessive 48|Usher syndrome 1J (autosomal recessive)" EF-hand domain containing 863 2004-04-20 2016-10-05 10518 ENSG00000136425 OTTHUMG00000143731 uc002bdb.3 BC047381 NM_006383 "CCDS10296|CCDS61722|CCDS61723" O75838 "9931475|23023331" MGI:1929293 RGD:1308718 CIB2 605564 316333 +HGNC:24580 CIB3 calcium and integrin binding family member 3 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 KIP3 EF-hand domain containing 863 2004-02-12 2016-10-05 117286 ENSG00000141977 OTTHUMG00000182281 uc002nds.4 AB050868 NM_054113 "CCDS12340|CCDS74305" Q96Q77 MGI:2685953 RGD:1590245 CIB3 610645 +HGNC:33703 CIB4 calcium and integrin binding family member 4 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 EF-hand domain containing 863 2007-11-20 2014-11-19 130106 ENSG00000157884 OTTHUMG00000151993 uc002rhm.4 NM_001029881 CCDS33160 A0PJX0 15574431 MGI:1920509 RGD:1584147 CIB4 610646 +HGNC:14214 CIC capicua transcriptional repressor protein-coding gene gene with protein product Approved 19q13.2 19q13.2 KIAA0306 "capicua (Drosophila) homolog|capicua homolog (Drosophila)" 2001-02-05 2013-03-15 2016-10-12 23152 ENSG00000079432 OTTHUMG00000182794 uc002otf.1 AB002304 XM_011526660 CCDS12601 Q96RK0 "12393275|15981098" MGI:1918972 RGD:1310706 LRG_999|http://www.lrg-sequence.org/LRG/LRG_999 CIC 612082 +HGNC:23936 CICP1 capicua transcriptional repressor pseudogene 1 pseudogene pseudogene Approved Yq11.23 Yq11.23 capicua homolog (Drosophila) pseudogene 1 2010-02-15 2013-03-15 2016-10-05 360017 ENSG00000233652 OTTHUMG00000045203 NG_002935 12815422 PGOHUM00000234073 +HGNC:23935 CICP2 capicua transcriptional repressor pseudogene 2 pseudogene pseudogene Approved Yq11.23 Yq11.23 capicua homolog (Drosophila) pseudogene 2 2010-02-15 2013-03-15 2016-10-05 360016 ENSG00000233740 OTTHUMG00000045105 NG_002934 12815422 PGOHUM00000233849 +HGNC:37742 CICP3 capicua transcriptional repressor pseudogene 3 pseudogene pseudogene Approved 1p36.33 01p36.33 capicua homolog (Drosophila) pseudogene 3 2010-02-15 2013-03-15 2014-11-19 100132630 ENSG00000229376 OTTHUMG00000057431 NG_016558 PGOHUM00000244570 +HGNC:37753 CICP4 capicua transcriptional repressor pseudogene 4 pseudogene pseudogene Approved 20q13.33 20q13.33 capicua homolog (Drosophila) pseudogene 4 2010-02-15 2013-03-15 2014-11-19 100132920 ENSG00000232852 OTTHUMG00000033035 NG_016559 PGOHUM00000247574 +HGNC:37754 CICP5 capicua transcriptional repressor pseudogene 5 pseudogene pseudogene Approved 1q42.11 01q42.11 capicua homolog (Drosophila) pseudogene 5 2010-02-15 2013-03-15 2013-03-15 730978 ENSG00000233771 OTTHUMG00000037469 NG_016560 PGOHUM00000245217 +HGNC:37755 CICP6 capicua transcriptional repressor pseudogene 6 pseudogene pseudogene Approved 3q29 03q29 capicua homolog (Drosophila) pseudogene 6 2010-02-15 2013-03-15 2014-11-19 100507251 ENSG00000230304 OTTHUMG00000155429 NG_028737 PGOHUM00000237920 +HGNC:37756 CICP7 capicua transcriptional repressor pseudogene 7 pseudogene pseudogene Approved 1p36.33 01p36.33 capicua homolog (Drosophila) pseudogene 7 2010-02-16 2013-03-15 2014-11-18 100288667 ENSG00000233653 OTTHUMG00000057429 NG_028822 PGOHUM00000243865 +HGNC:37757 CICP8 capicua transcriptional repressor pseudogene 8 pseudogene pseudogene Approved 7p11.2 07p11.2 capicua homolog (Drosophila) pseudogene 8 2010-02-16 2013-03-15 2013-03-15 442676 ENSG00000225371 OTTHUMG00000156226 NG_027793 PGOHUM00000233252 +HGNC:37758 CICP9 capicua transcriptional repressor pseudogene 9 pseudogene pseudogene Approved 10p11.1 10p11.1 capicua homolog (Drosophila) pseudogene 9 2010-02-16 2013-03-15 2014-11-19 100420293 ENSG00000228882 OTTHUMG00000017997 NG_025428 PGOHUM00000238422 +HGNC:37901 CICP10 capicua transcriptional repressor pseudogene 10 pseudogene pseudogene Approved 2q37.3 02q37.3 capicua homolog (Drosophila) pseudogene 10 2010-03-09 2013-03-15 2014-11-19 100462787 ENSG00000224160 OTTHUMG00000152147 NG_021554 PGOHUM00000240573 +HGNC:37903 CICP11 capicua transcriptional repressor pseudogene 11 pseudogene pseudogene Approved 7p11.2 07p11.2 capicua homolog (Drosophila) pseudogene 11 2010-03-09 2013-03-15 2014-11-19 100288904 ENSG00000237799 OTTHUMG00000156121 NG_022989 PGOHUM00000233242 +HGNC:37905 CICP12 capicua transcriptional repressor pseudogene 12 pseudogene pseudogene Approved 7p11.2 07p11.2 capicua homolog (Drosophila) pseudogene 12 2010-03-09 2013-03-15 2014-11-19 100420224 ENSG00000225270 OTTHUMG00000156173 NG_022557 PGOHUM00000233246 +HGNC:37907 CICP13 capicua transcriptional repressor pseudogene 13 pseudogene pseudogene Approved 1q41 01q41 capicua homolog (Drosophila) pseudogene 13 2010-03-09 2013-03-15 2014-11-19 728615 ENSG00000234419 OTTHUMG00000037480 NG_022827 PGOHUM00000245214 +HGNC:38542 CICP14 capicua transcriptional repressor pseudogene 14 pseudogene pseudogene Approved 7q32.1 07q32.1 capicua homolog (Drosophila) pseudogene 14 2010-06-08 2013-03-15 2014-11-18 100130600 ENSG00000281490 OTTHUMG00000184505 NG_023445 PGOHUM00000232986 +HGNC:38549 CICP15 capicua transcriptional repressor pseudogene 15 pseudogene pseudogene Approved 5q35.3 05q35.3 capicua homolog (Drosophila) pseudogene 15 2010-06-11 2013-03-15 2014-11-19 100507648 NG_028182 PGOHUM00000235491 +HGNC:38550 CICP16 capicua transcriptional repressor pseudogene 16 pseudogene pseudogene Approved 4q26 04q26 capicua homolog (Drosophila) pseudogene 16 2010-06-11 2013-03-15 2014-11-19 100420203 ENSG00000248213 OTTHUMG00000161208 NG_022032 PGOHUM00000245672 +HGNC:48827 CICP17 capicua transcriptional repressor pseudogene 17 pseudogene pseudogene Approved 7p12.1 07p12.1 2013-06-17 2013-06-17 642663 ENSG00000227233 OTTHUMG00000156000 NG_028679 PGOHUM00000233227 +HGNC:48828 CICP18 capicua transcriptional repressor pseudogene 18 pseudogene pseudogene Approved 6p25.3 06p25.3 2013-06-17 2013-06-17 646070 ENSG00000217929 OTTHUMG00000014108 NG_022338 PGOHUM00000243466 +HGNC:48829 CICP19 capicua transcriptional repressor pseudogene 19 pseudogene pseudogene Approved 19p13.3 19p13.3 2013-06-17 2015-07-24 100506706 ENSG00000282059 OTTHUMG00000180463 NG_028701 PGOHUM00000234462 +HGNC:48830 CICP20 capicua transcriptional repressor pseudogene 20 pseudogene pseudogene Approved 7p12.3 07p12.3 2013-06-17 2013-06-17 100129050 ENSG00000235955 OTTHUMG00000155427 NG_022532 PGOHUM00000232679 +HGNC:48836 CICP21 capicua transcriptional repressor pseudogene 21 pseudogene pseudogene Approved 1q43 01q43 2013-06-17 2013-06-17 100420263 NG_027229 PGOHUM00000245285 +HGNC:48838 CICP22 capicua transcriptional repressor pseudogene 22 pseudogene pseudogene Approved 7p14.1 07p14.1 2013-06-17 2013-06-17 100288083 ENSG00000226220 OTTHUMG00000155281 NG_028664 PGOHUM00000264519 +HGNC:48833 CICP23 capicua transcriptional repressor pseudogene 23 pseudogene pseudogene Approved 11p15.5 11p15.5 2013-06-17 2013-06-17 100505953 ENSG00000270921 OTTHUMG00000184851 NG_027976 PGOHUM00000242548 +HGNC:48831 CICP24 capicua transcriptional repressor pseudogene 24 pseudogene pseudogene Approved 7q11.21 07q11.21 2013-06-17 2013-06-17 100996387 ENSG00000271466 OTTHUMG00000184703 PGOHUM00000232800 +HGNC:48837 CICP25 capicua transcriptional repressor pseudogene 25 pseudogene pseudogene Approved 16q24.3 16q24.3 2013-06-17 2013-06-17 100289383 NG_027975 PGOHUM00000264444 +HGNC:48834 CICP26 capicua transcriptional repressor pseudogene 26 pseudogene pseudogene Approved 1q42.13 01q42.13 2013-06-17 2013-06-17 648262 ENSG00000233003 OTTHUMG00000057827 NG_022756 PGOHUM00000244468 +HGNC:48835 CICP27 capicua transcriptional repressor pseudogene 27 pseudogene pseudogene Approved 1p36.33 01p36.33 2013-06-17 2013-06-17 100420257 ENSG00000233750 OTTHUMG00000001257 NG_027060 PGOHUM00000244554 +HGNC:48832 CICP28 capicua transcriptional repressor pseudogene 28 pseudogene pseudogene Approved 7p11.2 07p11.2 2013-06-17 2013-06-17 100287136 NG_022558 PGOHUM00000233264 +HGNC:1976 CIDEA cell death-inducing DFFA-like effector a protein-coding gene gene with protein product Approved 18p11.21 18p11.21 CIDE-A 1998-07-15 2014-11-19 1149 ENSG00000176194 OTTHUMG00000131691 uc002kqt.5 AF041378 NM_001279 CCDS11856 O60543 "9564035|18509062" MGI:1270845 RGD:1305106 CIDEA 604440 +HGNC:1977 CIDEB cell death-inducing DFFA-like effector b protein-coding gene gene with protein product Approved 14q12 14q12 2000-01-20 2015-08-27 27141 ENSG00000136305 OTTHUMG00000171555 uc001woo.4 AF190901 XM_017021221 CCDS32056 Q9UHD4 "10619428|10837461" MGI:1270844 RGD:1310000 CIDEB 604441 +HGNC:24229 CIDEC cell death inducing DFFA like effector c protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "CIDE-3|FLJ20871|Fsp27" cell death-inducing DFFA-like effector c 2004-07-26 2016-01-26 2016-10-05 63924 ENSG00000187288 OTTHUMG00000128522 uc003btq.4 NM_022094 "CCDS2587|CCDS56239|CCDS74897|CCDS82731" Q96AQ7 12429024 MGI:95585 RGD:1562113 CIDEC 612120 444087 +HGNC:24230 CIDECP cell death-inducing DFFA-like effector c pseudogene pseudogene pseudogene Approved 3p25.3 03p25.3 CICE 2007-07-26 2014-11-19 152302 ENSG00000186162 OTTHUMG00000155323 AF279614 NR_002786 +HGNC:7067 CIITA class II major histocompatibility complex transactivator protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "C2TA|NLRA" "NLR family, acid domain containing|nucleotide-binding oligomerization domain, leucine rich repeat and acid domain containing" MHC2TA "MHC class II transactivator|class II, major histocompatibility complex, transactivator" NLR family 666 1997-06-12 2005-08-12 2016-07-14 2016-10-12 4261 ENSG00000179583 OTTHUMG00000129753 uc002dai.5 U18259 NM_000246 "CCDS10544|CCDS66943|CCDS73826" P33076 8402893 MGI:108445 RGD:619813 "CIITAbase: Mutation registry for MHCII transactivating protein deficiency (previously known as MHC2TAbase)|http://structure.bmc.lu.se/idbase/CIITAbase/|LRG_49|http://www.lrg-sequence.org/LRG/LRG_49" CIITA 600005 119442 objectId:1767 +HGNC:1980 CILP cartilage intermediate layer protein protein-coding gene gene with protein product Approved 15q22.31 15q22.31 HsT18872 cartilage intermediate layer protein, nucleotide pyrophosphohydrolase Immunoglobulin like domain containing 594 1998-08-18 2015-11-24 2016-10-05 8483 ENSG00000138615 OTTHUMG00000133140 uc002aon.3 AY358904 NM_003613 CCDS10203 O75339 "9722584|9722583" MGI:2444507 RGD:1305124 CILP 603489 +HGNC:24213 CILP2 cartilage intermediate layer protein 2 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 MGC45771 Immunoglobulin like domain containing 594 2004-02-13 2015-09-07 148113 ENSG00000160161 OTTHUMG00000182148 uc002nmv.4 AF542080 NM_153221 CCDS12405 Q8IUL8 12477932 MGI:1915959 RGD:1311157 CILP2 612419 +HGNC:23789 CINP cyclin dependent kinase 2 interacting protein protein-coding gene gene with protein product Approved 14q32.31 14q32.31 MGC849 2009-08-14 2016-06-08 2016-10-05 51550 ENSG00000100865 OTTHUMG00000171775 uc059fna.1 "AK056112|AF228148|AF228149" NM_032630 CCDS9972 Q9BW66 16082200 MGI:1914486 RGD:1563395 CINP 613362 +HGNC:20365 CIPC CLOCK interacting pacemaker protein-coding gene gene with protein product Approved 14q24.3 14q24.3 CLOCK-interacting protein, circadian KIAA1737 KIAA1737 2003-11-21 2014-01-10 2016-07-05 2016-07-05 85457 ENSG00000198894 OTTHUMG00000171573 AB051524 NM_033426 CCDS9855 Q9C0C6 "17310242|19414601" MGI:1919185 RGD:1309492 616995 +HGNC:1981 CIPO entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:24217 CIR1 corepressor interacting with RBPJ, 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 CIR "recepin|CBF1 interacting corepressor" 2009-07-14 2014-11-19 9541 ENSG00000138433 OTTHUMG00000132338 uc002uim.4 AF098297 NM_004882 CCDS2256 Q86X95 "15652350|11222720|9874765" MGI:1914185 RGD:1309199 CIR1 605228 +HGNC:44011 CIR1P1 corepressor interacting with RBPJ, 1 pseudogene 1 pseudogene pseudogene Approved 5q33.2 05q33.2 2012-05-28 2014-11-19 100131740 ENSG00000253146 OTTHUMG00000164140 NG_021866 PGOHUM00000235431 +HGNC:44012 CIR1P2 corepressor interacting with RBPJ, 1 pseudogene 2 pseudogene pseudogene Approved 4q26 04q26 2012-05-28 2014-11-19 100131828 ENSG00000250215 OTTHUMG00000161092 NG_022027 PGOHUM00000245663 +HGNC:44013 CIR1P3 corepressor interacting with RBPJ, 1 pseudogene 3 pseudogene pseudogene Approved 11p13 11p13 2012-05-28 2014-11-19 106480783 ENSG00000216708 OTTHUMG00000044383 NG_044033 PGOHUM00000242635 +HGNC:1982 CIRBP cold inducible RNA binding protein protein-coding gene gene with protein product Approved 19p13.3 19p13.3 CIRP "Cold-inducible RNA-binding protein|glycine-rich RNA binding protein" cold inducible RNA-binding protein RNA binding motif containing 725 1997-12-05 2001-11-28 2014-11-18 1153 ENSG00000099622 OTTHUMG00000180145 uc060qxg.1 D78134 NM_001280 "CCDS12059|CCDS74244|CCDS74245" Q14011 "9434172|9151692" MGI:893588 RGD:620756 CIRBP 602649 +HGNC:28588 CIRBP-AS1 CIRBP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19p13.3 19p13.3 MGC39338 C19orf23 "chromosome 19 open reading frame 23|CIRBP antisense RNA 1 (non-protein coding)" 2004-03-16 2011-11-23 2012-08-15 2014-11-19 148046 ENSG00000267493 OTTHUMG00000180146 uc010xgk.5 BC026041 NR_027271 Q8TBR5 12477932 +HGNC:30880 CISD1 CDGSH iron sulfur domain 1 protein-coding gene gene with protein product Approved 10q21.1 10q21.1 "MDS029|mitoNEET" "C10orf70|ZCD1" "chromosome 10 open reading frame 70|zinc finger, CDGSH-type domain 1" CDGSH iron sulfur domain containing 481 2004-02-05 2007-08-10 2007-08-10 2016-10-05 55847 ENSG00000122873 OTTHUMG00000018266 uc001jkc.6 AY960578 NM_018464 CCDS7251 Q9NZ45 "17376863|17584744" MGI:1261855 RGD:1309529 CISD1 611932 +HGNC:29611 CISD1P1 CDGSH iron sulfur domain 1 pseudogene 1 pseudogene pseudogene Approved 2p24.1 02p24.1 "ZCD1B|CISD1B" "zinc finger, CDGSH-type domain 1B|CDGSH iron sulfur domain 1B|CDGSH iron sulfur domain 1B pseudogene" 2006-06-30 2011-04-28 2011-04-28 2014-11-19 130500 ENSG00000213403 OTTHUMG00000151771 NG_005172 CISD1P1 PGOHUM00000240590 +HGNC:24212 CISD2 CDGSH iron sulfur domain 2 protein-coding gene gene with protein product Approved 4q24 04q24 "Miner1|ERIS|NAF-1" "mitoNEET related 1|endoplasmic reticulum intermembrane small protein|nutrient-deprivation autophagy factor-1" "ZCD2|WFS2" "zinc finger, CDGSH-type domain 2|Wolfram syndrome 2" CDGSH iron sulfur domain containing 481 2006-06-30 2007-08-10 2007-08-10 2014-11-19 493856 ENSG00000145354 OTTHUMG00000161014 uc003hwt.5 BX537971 NM_001008388 CCDS34040 Q8N5K1 "17376863|17584744|17846994" MGI:1914256 RGD:1566242 CISD2 611507 166722 +HGNC:27578 CISD3 CDGSH iron sulfur domain 3 protein-coding gene gene with protein product Approved 17q12 17q12 Miner2 mitoNEET related 2 CDGSH iron sulfur domain containing 481 2007-08-10 2015-09-11 284106 ENSG00000277972 OTTHUMG00000188500 uc032gls.2 AK097047 NM_001136498 CCDS45662 P0C7P0 "17376863|17584744" MGI:101788 RGD:1559720 CISD3 611933 +HGNC:1984 CISH cytokine inducible SH2 containing protein protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "CIS|G18|CIS-1|SOCS" cytokine inducible SH2-containing protein "SH2 domain containing|Suppressors of cytokine signaling" "741|764" 1996-09-23 2016-04-04 2016-10-05 1154 ENSG00000114737 OTTHUMG00000156853 uc003dax.4 Z77852 NM_145071 "CCDS2831|CCDS46834" Q9NSE2 "9465889|7796808" MGI:103159 RGD:69261 CISH 602441 +HGNC:49426 CISTR chondrogenesis-associated transcript non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 "CISTR-ACT|CISTRACT|re52431" cis- and trans-chromosomal chondrogenic regulator transcript Long non-coding RNAs 788 2014-01-14 2014-01-14 2014-01-14 102216268 ENSG00000260492 OTTHUMG00000173078 "DA125942|HY042141" NR_104332 23093776 RGD:7365122 +HGNC:1985 CIT citron rho-interacting serine/threonine kinase protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "KIAA0949|STK21|CRIK|CITK" serine/threonine kinase 21 citron (rho-interacting, serine/threonine kinase 21) 1999-08-05 2014-04-23 2016-10-04 11113 ENSG00000122966 OTTHUMG00000134325 uc001txi.3 AB023166 NM_007174 "CCDS9192|CCDS55891" O14578 9792683 MGI:105313 RGD:70878 CIT 605629 464175 objectId:1509 2.7.11.1 +HGNC:1986 CITED1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 MSG1 Cbp/p300-interacting transactivator, with Glu/Asp rich carboxy-terminal domain, 1 1998-03-27 2016-02-24 2016-02-24 4435 ENSG00000125931 OTTHUMG00000021812 uc004eat.4 U65092 NM_004143 "CCDS14419|CCDS48136" Q99966 "8901575|9721210" MGI:108023 RGD:620781 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CITED1 CITED1 300149 +HGNC:1987 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding gene gene with protein product Approved 6q24.1 06q24.1 MRG1 Cbp/p300-interacting transactivator, with Glu/Asp rich carboxy-terminal domain, 2 1999-06-11 2016-02-24 2016-10-05 10370 ENSG00000164442 OTTHUMG00000015691 uc003qip.3 U65093 NM_006079 "CCDS5195|CCDS75530" Q99967 "8901575|10552932" MGI:1306784 RGD:620112 CITED2 602937 240691 +HGNC:18696 CITED4 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 transcriptional co-activator 4 Cbp/p300-interacting transactivator, with Glu/Asp rich carboxy-terminal domain, 4 2002-05-29 2016-02-24 2016-10-05 163732 ENSG00000179862 OTTHUMG00000007728 uc001cgj.4 AF362074 NM_133467 CCDS458 Q96RK1 11744733 MGI:1861694 RGD:620113 CITED4 606815 +HGNC:16744 CIZ1 CDKN1A interacting zinc finger protein 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "LSFR1|ZNF356" 2003-10-22 2016-10-05 25792 ENSG00000148337 OTTHUMG00000020735 uc004btt.4 AB030835 NM_012127 "CCDS6894|CCDS48033|CCDS48034|CCDS75910|CCDS59147" Q9ULV3 10529385 MGI:1920234 RGD:1305336 CIZ1 611420 +HGNC:1990 CKAP2 cytoskeleton associated protein 2 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "LB1|FLJ10749|se20-10|TMAP" 1999-12-01 2016-10-05 26586 ENSG00000136108 OTTHUMG00000016967 uc001vgu.4 AF177227 XM_005266344 "CCDS9435|CCDS41893|CCDS66557|CCDS73578" Q8WWK9 9771967 MGI:1931797 RGD:1311631 CKAP2 611569 +HGNC:26877 CKAP2L cytoskeleton associated protein 2 like protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "FLJ40629|radmis" radial fiber and mitotic spindle 2006-03-24 2015-11-26 2016-10-05 150468 ENSG00000169607 OTTHUMG00000131313 uc002tie.3 AL832036 NM_152515 CCDS2100 Q8IYA6 24260314 MGI:1917716 RGD:1590645 CKAP2L 616174 418214 +HGNC:49923 CKAP2P1 cytoskeleton associated protein 2 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 2014-03-21 2014-03-21 100420763 ENSG00000258722 OTTHUMG00000171363 NG_027249 PGOHUM00000247733 +HGNC:16991 CKAP4 cytoskeleton associated protein 4 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "P63|CLIMP-63|ERGIC-63" cytoskeleton-associated protein 4 2001-11-14 2016-07-04 2016-07-04 10970 ENSG00000136026 OTTHUMG00000170085 uc001tlk.4 X69910 NM_006825 CCDS9103 Q07065 8314870 MGI:2444926 RGD:1311989 CKAP4 +HGNC:28959 CKAP5 cytoskeleton associated protein 5 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "ch-TOG|KIAA0097|TOG|TOGp" 2005-06-01 2014-11-19 9793 ENSG00000175216 OTTHUMG00000166599 uc001ndi.3 NM_014756 "CCDS7924|CCDS31477" Q14008 "7788527|8536682" MGI:1923036 RGD:1563596 CKAP5 611142 +HGNC:1991 CKB creatine kinase B protein-coding gene gene with protein product Approved 14q32.33 14q32.33 creatine kinase brain-type CKBB creatine kinase, brain 2001-06-22 2016-03-18 2016-10-05 1152 ENSG00000166165 OTTHUMG00000171786 uc001ynf.3 XM_017020951 CCDS9981 P12277 25810257 MGI:88407 RGD:2357 CKB 123280 2.7.3.2 +HGNC:1992 CKBE creatine kinase, ectopic expression phenotype phenotype only Approved 14q32 14q32 2001-06-22 2015-08-10 1156 123270 +HGNC:1993 CKBP1 creatine kinase B pseudogene 1 pseudogene pseudogene Approved 16q11.2 16q11.2 1992-11-26 2012-10-16 1157 ENSG00000260889 OTTHUMG00000175603 M60806 NG_001535 "1676982|2883200" PGOHUM00000261881 +HGNC:13253 CKLF chemokine like factor protein-coding gene gene with protein product Approved 16q21 16q21 "UCK-1|CKLF3|CKLF4|HSPC224|C32" CKLF1 chemokine-like factor 1 2001-08-23 2003-03-07 2016-07-14 2016-10-05 51192 ENSG00000217555 OTTHUMG00000137504 uc002eow.4 AF096895 NM_016326 "CCDS10806|CCDS10807|CCDS10808|CCDS10809|CCDS45502" Q9UBR5 "11042152|11415443" MGI:1922708 RGD:620708 CKLF 616074 +HGNC:39977 CKLF-CMTM1 CKLF-CMTM1 readthrough other readthrough Approved 16q21 16q21 2011-04-19 2016-10-05 100529251 ENSG00000254788 OTTHUMG00000167106 uc021tju.2 NM_001202509 "CCDS56000|CCDS73898|CCDS73899" +HGNC:1994 CKM creatine kinase, M-type protein-coding gene gene with protein product Approved 19q13.32 19q13.32 CKMM creatine kinase, muscle 2001-06-22 2016-02-10 2016-02-10 1158 ENSG00000104879 OTTHUMG00000181782 uc002pbd.5 M14780 XM_017026240 CCDS12659 P06732 MGI:88413 RGD:2358 CKM 123310 2.7.3.2 +HGNC:31736 CKMT1A creatine kinase, mitochondrial 1A protein-coding gene gene with protein product Approved 15q15.3 15q15.3 CKMT1 creatine kinase, mitochondrial 1 (ubiquitous) 2005-04-15 2016-10-05 548596 ENSG00000223572 OTTHUMG00000059898 uc001zsn.3 "BC001926|BC006467" NM_001321927 CCDS32217 P12532 MGI:99441 CKMT1A 613415 2.7.3.2 +HGNC:1995 CKMT1B creatine kinase, mitochondrial 1B protein-coding gene gene with protein product Approved 15q15.3 15q15.3 UMTCK "CKMT|CKMT1" creatine kinase, mitochondrial 1 (ubiquitous) 1989-04-13 2005-04-15 2016-10-05 1159 ENSG00000237289 OTTHUMG00000059900 uc001zsc.3 "AK094322|J04469" NM_020990 CCDS10097 P12532 MGI:99441 RGD:61976 CKMT1B 123290 2.7.3.2 +HGNC:1996 CKMT2 creatine kinase, mitochondrial 2 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 SMTCK creatine kinase, mitochondrial 2 (sarcomeric) 1992-10-14 2015-11-26 2015-11-26 1160 ENSG00000131730 OTTHUMG00000119013 uc003khd.5 NM_001825 CCDS4053 P17540 2324105 MGI:1923972 RGD:61977 CKMT2 123295 2.7.3.2 +HGNC:48997 CKMT2-AS1 CKMT2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q14.1 05q14.1 2013-07-26 2013-07-26 100131067 ENSG00000247572 OTTHUMG00000162566 NR_034121 +HGNC:19083 CKS1B CDC28 protein kinase regulatory subunit 1B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "ckshs1|CKS1" CDC28 protein kinase 1B 2002-08-08 2002-10-07 2016-10-05 1163 ENSG00000173207 OTTHUMG00000037413 uc001fgb.4 BC007751 NM_001826 CCDS1077 P61024 2227411 MGI:1889208 RGD:1561797 CKS1B 116900 +HGNC:20004 CKS1BP1 CDC28 protein kinase regulatory subunit 1B pseudogene 1 pseudogene pseudogene Approved 14q32.2 14q32.2 CKS1BP CDC28 protein kinase regulatory subunit 1B pseudogene 2003-01-13 2009-11-25 2009-11-25 2016-10-05 317780 ENSG00000258788 OTTHUMG00000171411 NG_002475 PGOHUM00000292759 +HGNC:24232 CKS1BP2 CDC28 protein kinase regulatory subunit 1B pseudogene 2 pseudogene pseudogene Approved 10p11.23 10p11.23 bA192N10.2 2004-04-22 2016-08-16 246714 ENSG00000225976 OTTHUMG00000017883 NG_001578 +HGNC:24233 CKS1BP3 CDC28 protein kinase regulatory subunit 1B pseudogene 3 pseudogene pseudogene Approved 5q12.1 05q12.1 2004-04-22 2014-10-14 246715 ENSG00000268942 OTTHUMG00000187230 NG_001579 +HGNC:17395 CKS1BP4 CDC28 protein kinase regulatory subunit 1B pseudogene 4 pseudogene pseudogene Approved 11q14.1 11q14.1 2009-11-25 2009-11-25 100499259 NG_023440 +HGNC:17640 CKS1BP5 CDC28 protein kinase regulatory subunit 1B pseudogene 5 pseudogene pseudogene Approved 5q31.3 05q31.3 2009-11-25 2014-11-19 100526793 ENSG00000250972 OTTHUMG00000163167 NG_027929 PGOHUM00000235801 +HGNC:24608 CKS1BP6 CDC28 protein kinase regulatory subunit 1B pseudogene 6 pseudogene pseudogene Approved Xp21.2 Xp21.2 2009-11-25 2014-11-19 652904 ENSG00000178556 OTTHUMG00000021326 NG_012762 +HGNC:1999 CKS1BP7 CDC28 protein kinase regulatory subunit 1B pseudogene 7 pseudogene pseudogene Approved 8q21.13 08q21.13 "CKS1|CKS1A" "CDC28 protein kinase 1|CDC28 protein kinase regulatory subunit 1A|CDC28 protein kinase regulatory subunit 1A pseudogene" 1996-03-12 2011-04-28 2011-04-28 2011-04-28 137529 ENSG00000254331 OTTHUMG00000164749 NG_001577 8697818 PGOHUM00000249403 +HGNC:2000 CKS2 CDC28 protein kinase regulatory subunit 2 protein-coding gene gene with protein product Approved 9q22.2 09q22.2 CDC28 protein kinase 2 1996-03-12 2002-10-07 2016-10-05 1164 ENSG00000123975 OTTHUMG00000020180 uc004aqh.3 X54942 NM_001827 CCDS6682 P33552 "2227411|8697818" MGI:1913447 RGD:1562047 CKS2 116901 +HGNC:2004 CLA3 cerebellar ataxia 3 (cerebellar parenchyma disorder 1) phenotype phenotype only Approved reserved reserved CPD1 1991-08-22 2011-02-10 1167 608029 +HGNC:20394 CLAM cerebellar atrophy with progressive microcephaly phenotype phenotype only Approved 7q11-q21 07q11-q21 PCH3 2004-12-23 2011-02-10 373073 12771259 +HGNC:17088 CLASP1 cytoplasmic linker associated protein 1 protein-coding gene gene with protein product Approved 2q14.2-q14.3 02q14.2-q14.3 "KIAA0622|MAST1" multiple asters 1 2002-06-12 2016-10-11 23332 ENSG00000074054 OTTHUMG00000153331 uc061nli.1 AB014522 NM_015282 Q7Z460 "9734811|10899121|16914514" MGI:1923957 RGD:1310970 CLASP1 605852 +HGNC:17078 CLASP2 cytoplasmic linker associated protein 2 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 KIAA0627 2002-06-12 2016-10-05 23122 ENSG00000163539 OTTHUMG00000156489 uc062hxz.1 AB014527 NM_001207044 O75122 "9734811|10899121" MGI:1923749 RGD:619789 CLASP2 605853 +HGNC:17731 CLASRP CLK4 associating serine/arginine rich protein protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "SWAP2|CLASP" Clk4 associating SR-related protein SFRS16 "splicing factor, arginine/serine-rich 16|CLK4-associating serine/arginine rich protein" 2003-08-06 2010-09-21 2016-04-29 2016-10-05 11129 ENSG00000104859 OTTHUMG00000150189 uc002pak.3 AF042800 NM_007056 "CCDS12652|CCDS62710" Q8N2M8 12169693 MGI:1855695 RGD:1563538 CLASRP +HGNC:2014 CLC Charcot-Leyden crystal galectin protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "LGALS10|MGC149659|Gal-10" "eosinophil lysophospholipase|lysolecithin acylhydrolase|galectin 10|lectin, galactoside-binding, soluble, 10" Charcot-Leyden crystal protein Galectins 629 1991-07-31 2013-06-12 2016-10-05 1178 ENSG00000105205 OTTHUMG00000183144 uc002omh.4 L01664 NM_001828 CCDS33025 Q05315 "1577491|11834744" CLC 153310 +HGNC:2015 CLCA1 chloride channel accessory 1 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "CaCC|CLCRG1" "chloride channel, calcium activated, family member 1|chloride channel regulator 1" Chloride channel accessory 867 1998-06-25 2009-01-29 2015-08-27 1179 ENSG00000016490 OTTHUMG00000010254 uc057ibt.1 NM_001285 CCDS709 A8K7I4 9828122 MGI:1346342 RGD:1306258 CLCA1 603906 +HGNC:2016 CLCA2 chloride channel accessory 2 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 CLCRG2 "chloride channel, calcium activated, family member 2|chloride channel regulator 2" Chloride channel accessory 867 1998-09-29 2009-01-29 2015-08-28 9635 ENSG00000137975 OTTHUMG00000010256 uc001dlr.5 NM_006536 CCDS708 Q9UQC9 MGI:2139758 RGD:1304894 CLCA2 604003 +HGNC:2017 CLCA3P chloride channel accessory 3, pseudogene pseudogene pseudogene Approved 1p22.3 01p22.3 CLCA3 "chloride channel, calcium activated, family member 3|chloride channel regulator 3" Chloride channel accessory 867 1998-10-02 2009-01-29 2011-04-15 2014-11-19 9629 ENSG00000153923 OTTHUMG00000010258 AF043976 NM_004921 Q9Y6N3 10095065 CLCA3P 604337 PGOHUM00000296385 +HGNC:2018 CLCA4 chloride channel accessory 4 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 CaCC2 "chloride channel, calcium activated, family member 4|chloride channel regulator 4" Chloride channel accessory 867 1999-11-26 2009-01-29 2015-09-01 22802 ENSG00000016602 OTTHUMG00000010260 uc009wcs.4 AF127035 NM_012128 CCDS41355 Q14CN2 10437792 "MGI:2139744|MGI:2139790" RGD:1303234 CLCA4 616857 353921 +HGNC:29675 CLCC1 chloride channel CLIC like 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 MCLC Mid1-related chloride channel (yeast) chloride channel CLIC-like 1 2005-08-04 2016-01-19 2016-01-19 23155 ENSG00000121940 OTTHUMG00000011732 uc021ora.2 AB018304 NM_015127 "CCDS793|CCDS41362|CCDS60214|CCDS60215" Q96S66 "9872452|11279057" MGI:2385186 RGD:708359 CLCC1 +HGNC:17412 CLCF1 cardiotrophin-like cytokine factor 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "NNT1|BSF3|CLC|NR6|CISS2|BSF-3|NNT-1" "B-cell stimulating factor 3|cold-induced sweating syndrome 2|novel neurotrophin-1" CRLF1 associated cytokine-like factor 1 Interleukin 6 cytokine family 1264 2005-02-22 2006-07-03 2016-10-05 23529 ENSG00000175505 OTTHUMG00000167669 uc001okq.4 BC012939 NM_013246 "CCDS31617|CCDS53666" Q9UBD9 "10500198|10448081|16782820" MGI:1930088 RGD:1303171 CLCF1 607672 159242 +HGNC:2019 CLCN1 chloride voltage-gated channel 1 protein-coding gene gene with protein product Approved 7q34 07q34 "CLC1|ClC-1" Thomsen disease, autosomal dominant "chloride channel 1, skeletal muscle|chloride channel, voltage-sensitive 1" Chloride voltage-gated channels 302 1992-10-13 2016-02-04 2016-02-04 1180 ENSG00000188037 OTTHUMG00000152695 uc003wcr.2 Z25884 NM_000083 CCDS5881 P35523 1379744 MGI:88417 RGD:2360 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=CLCN1 CLCN1 118425 119447 objectId:698 +HGNC:2020 CLCN2 chloride voltage-gated channel 2 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "CLC2|EJM6|ClC-2" "chloride channel 2|chloride channel, voltage-sensitive 2" Chloride voltage-gated channels 302 1994-01-28 2016-02-04 2016-02-04 1181 ENSG00000114859 OTTHUMG00000156747 uc003foi.4 S77770 XR_001740001 "CCDS3263|CCDS54690|CCDS54691|CCDS54692" P51788 7795595 MGI:105061 RGD:2361 CLCN2 600570 226047 objectId:699 +HGNC:2021 CLCN3 chloride voltage-gated channel 3 protein-coding gene gene with protein product Approved 4q33 04q33 "CLC3|ClC-3" "chloride channel 3|chloride channel, voltage-sensitive 3" Chloride voltage-gated channels 302 1994-01-28 2016-02-04 2016-02-04 1182 ENSG00000109572 OTTHUMG00000160973 uc003ish.4 X78520 XM_005262726 "CCDS34100|CCDS34101|CCDS58932|CCDS75208" P51790 MGI:103555 RGD:621219 CLCN3 600580 objectId:702 +HGNC:49775 CLCN3P1 chloride voltage-gated channel 3 pseudogene 1 pseudogene pseudogene Approved 9p22.3 09p22.3 chloride channel, voltage-sensitive 3 pseudogene 1 2014-02-14 2016-02-04 2016-02-04 100419056 ENSG00000232000 OTTHUMG00000019579 NG_023786 PGOHUM00000235971 +HGNC:2022 CLCN4 chloride voltage-gated channel 4 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "CLC4|ClC-4" "chloride channel 4|chloride channel, voltage-sensitive 4" Chloride voltage-gated channels 302 1994-01-28 2016-02-04 2016-10-05 1183 ENSG00000073464 OTTHUMG00000021125 uc004csy.5 X77197 NM_001830 "CCDS14137|CCDS59159" P51793 8069296 MGI:104571 RGD:708381 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CLCN4 CLCN4 302910 461754 objectId:703 +HGNC:2023 CLCN5 chloride voltage-gated channel 5 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "DENTS|XLRH|hClC-K2|hCIC-K2|CLC5|XRN|ClC-5" Dent disease "NPHL2|NPHL1" "nephrolithiasis 2, X-linked|nephrolithiasis 1 (X-linked)|chloride channel 5|chloride channel, voltage-sensitive 5" Chloride voltage-gated channels 302 1994-01-28 2016-02-04 2016-02-04 1184 ENSG00000171365 OTTHUMG00000021514 uc004dos.2 X91906 XM_017029257 "CCDS14328|CCDS48115|CCDS69763" P51795 "7874126|8111383|8099916|8559248|9602200" MGI:99486 RGD:2362 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CLCN5 CLCN5 300008 119453 objectId:704 +HGNC:2024 CLCN6 chloride voltage-gated channel 6 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "CLC-6|KIAA0046|ClC-6" "chloride channel 6|chloride channel, voltage-sensitive 6" Chloride voltage-gated channels 302 1997-04-21 2016-02-04 2016-02-04 1185 ENSG00000011021 OTTHUMG00000002299 uc001ate.6 X83378 NM_001286 "CCDS138|CCDS57972" P51797 8543009 MGI:1347049 RGD:1305379 Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/ CLCN6 602726 objectId:705 +HGNC:2025 CLCN7 chloride voltage-gated channel 7 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "CLC-7|OPTA2|CLC7|ClC-7|PPP1R63" protein phosphatase 1, regulatory subunit 63 "chloride channel 7|chloride channel, voltage-sensitive 7" "Chloride voltage-gated channels|Protein phosphatase 1 regulatory subunits" "302|694" 1997-04-21 2016-02-04 2016-05-06 1186 ENSG00000103249 OTTHUMG00000044467 uc002clv.4 Z67743 NM_001287 "CCDS32361|CCDS45378" P51798 8543009 MGI:1347048 RGD:61836 CLCN7 602727 119462 objectId:706 +HGNC:2026 CLCNKA chloride voltage-gated channel Ka protein-coding gene gene with protein product Approved 1p36.13 01p36.13 hClC-Ka "chloride channel Ka|chloride channel, voltage-sensitive Ka" Chloride voltage-gated channels 302 1995-12-11 2016-02-04 2016-02-04 1187 ENSG00000186510 OTTHUMG00000009529 uc001axu.4 NM_004070 "CCDS167|CCDS41269|CCDS57973" P51800 8544406 "MGI:1329026|MGI:1930643" RGD:68435 CLCNKA 602024 159370 objectId:700 +HGNC:2027 CLCNKB chloride voltage-gated channel Kb protein-coding gene gene with protein product Approved 1p36.13 01p36.13 hClC-Kb "chloride channel Kb|chloride channel, voltage-sensitive Kb" Chloride voltage-gated channels 302 1995-12-11 2016-02-04 2016-02-04 1188 ENSG00000184908 OTTHUMG00000009530 uc001axx.6 AK098217 NM_000085 "CCDS168|CCDS57974" P51801 "MGI:1329026|MGI:1930643" RGD:628639 CLCNKB 602023 119467 objectId:701 +HGNC:2028 CLCNL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:2029 CLCNL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:19257 CLCP1 Charcot-Leyden crystal protein pseudogene 1 pseudogene pseudogene Approved 22q11.21 22q11.21 2002-09-18 2016-07-22 266626 ENSG00000232305 OTTHUMG00000155638 NG_002369 PGOHUM00000297444 +HGNC:42536 CLCP2 Charcot-Leyden crystal protein pseudogene 2 pseudogene pseudogene Approved 13q34 13q34 LGALS10P1 2011-08-04 2011-08-04 2016-07-22 100128145 ENSG00000226158 OTTHUMG00000017401 BK006815 NG_011415 PGOHUM00000292247 +HGNC:2032 CLDN1 claudin 1 protein-coding gene gene with protein product Approved 3q28 03q28 "SEMP1|ILVASC" senescence-associated epithelial membrane protein 1 Claudins 488 1998-11-19 2016-10-05 9076 ENSG00000163347 OTTHUMG00000156214 uc003fsh.4 AF101051 NM_021101 CCDS3295 O95832 "10828592|9892664" MGI:1276109 RGD:68422 CLDN1 603718 119470 +HGNC:2041 CLDN2 claudin 2 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 Claudins 488 1998-11-19 2016-10-05 9075 ENSG00000165376 OTTHUMG00000022154 uc004emq.2 AK075405 NM_020384 CCDS14524 P57739 9892664 MGI:1276110 RGD:1560247 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CLDN2 CLDN2 300520 +HGNC:2045 CLDN3 claudin 3 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "RVP1|CPE-R2|HRVP1" "Clostridium perfringens enterotoxin receptor 2|ventral prostate.1-like protein|claudin-3|CPE-receptor 2" "C7orf1|CPETR2" Claudins 488 1998-07-23 2016-10-05 1365 ENSG00000165215 OTTHUMG00000023424 uc003tzg.4 AF007189 NM_001306 CCDS5559 O15551 "9441748|9892664" MGI:1329044 RGD:68425 CLDN3 602910 +HGNC:2046 CLDN4 claudin 4 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "CPE-R|WBSCR8|hCPE-R" "Clostridium perfringens enterotoxin receptor 1|Williams-Beuren syndrome chromosomal region 8 protein" "CPETR|CPETR1" Claudins 488 1998-04-22 2015-09-11 1364 ENSG00000189143 OTTHUMG00000023425 uc003tzh.2 AB000712 NM_001305 CCDS5560 O14493 "9334247|9892664" MGI:1313314 RGD:1307932 CLDN4 602909 +HGNC:2047 CLDN5 claudin 5 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "CPETRL1|BEC1" "AWAL|TMVCF" transmembrane protein deleted in velocardiofacial syndrome Claudins 488 1997-03-19 2008-08-01 2014-11-18 7122 ENSG00000184113 OTTHUMG00000150441 uc062bmp.1 AF000959 NM_003277 CCDS13763 O00501 "9441748|9192844" MGI:1276112 RGD:68431 CLDN5 602101 +HGNC:2048 CLDN6 claudin 6 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Claudins 488 1998-11-19 2015-09-11 9074 ENSG00000184697 OTTHUMG00000128999 uc002csu.5 AJ249735 NM_021195 CCDS10488 P56747 "9892664|18234789" MGI:1859284 RGD:1308837 CLDN6 615798 +HGNC:2049 CLDN7 claudin 7 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 Hs.84359 "CEPTRL2|CPETRL2" Claudins 488 1998-11-19 2015-09-11 1366 ENSG00000181885 OTTHUMG00000178005 uc002gfn.5 AJ011497 NM_001307 "CCDS11096|CCDS54081" O95471 9892664 MGI:1859285 RGD:68432 CLDN7 609131 +HGNC:2050 CLDN8 claudin 8 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 Claudins 488 1998-11-19 2016-10-05 9073 ENSG00000156284 OTTHUMG00000081872 uc002ynu.3 AJ250711 NM_199328 CCDS13587 P56748 9892664 MGI:1859286 RGD:1308575 CLDN8 611231 +HGNC:2051 CLDN9 claudin 9 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Claudins 488 1998-07-23 2015-09-11 9080 ENSG00000213937 OTTHUMG00000129000 uc010uwo.1 AJ130941 NM_020982 CCDS10487 O95484 "9441748|18234789" MGI:1913100 RGD:1308999 CLDN9 615799 +HGNC:2033 CLDN10 claudin 10 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "OSP-L|CPETRL3" Claudins 488 1999-01-22 2016-10-05 9071 ENSG00000134873 OTTHUMG00000017217 uc001vmh.3 U89916 NM_006984 "CCDS9475|CCDS9476" P78369 18025272 MGI:1913101 RGD:1308027 CLDN10 +HGNC:39907 CLDN10-AS1 CLDN10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q32.1 13q32.1 CLDN10 antisense RNA 1 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100874194 ENSG00000223392 OTTHUMG00000017220 uc031qmx.1 NR_046533 +HGNC:8514 CLDN11 claudin 11 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 OSP OTM oligodendrocyte transmembrane protein Claudins 488 1996-09-13 2008-08-01 2016-10-05 5010 ENSG00000013297 OTTHUMG00000158940 uc003fgx.4 AF068863 NM_005602 CCDS3213 O75508 "8661061|8797478" MGI:106925 RGD:71081 CLDN11 601326 +HGNC:29648 CLDN11CL entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:2034 CLDN12 claudin 12 protein-coding gene gene with protein product Approved 7q21.13 07q21.13 Claudins 488 1998-12-11 2016-10-05 9069 ENSG00000157224 OTTHUMG00000156612 uc003ukr.4 AJ250713 NM_012129 CCDS5618 P56749 MGI:1929288 RGD:1561053 CLDN12 611232 +HGNC:2035 CLDN14 claudin 14 protein-coding gene gene with protein product Approved 21q22.13 21q22.13 DFNB29 Claudins 488 1999-11-26 2016-10-05 23562 ENSG00000159261 OTTHUMG00000086638 uc002yvo.2 AJ132445 NM_144492 CCDS13645 O95500 11163249 MGI:1860425 RGD:1309165 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org CLDN14 605608 166812 +HGNC:2036 CLDN15 claudin 15 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 Claudins 488 1999-11-26 2016-10-05 24146 ENSG00000106404 OTTHUMG00000150512 uc003uyh.2 AJ245738 NM_014343 CCDS5717 P56746 MGI:1913103 RGD:1310678 CLDN15 615778 +HGNC:2037 CLDN16 claudin 16 protein-coding gene gene with protein product Approved 3q28 03q28 "PCLN1|HOMG3" "paracellin-1|hypomagnesemia 3, with hypercalciuria and nephrocalcinosis" Claudins 488 2000-01-07 2014-11-18 10686 ENSG00000113946 OTTHUMG00000156215 uc003fsi.3 AF152101 NM_006580 CCDS3296 Q9Y5I7 10390358 MGI:2148742 RGD:620322 CLDN16 603959 120625 +HGNC:2038 CLDN17 claudin 17 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "MGC126552|MGC126554" Claudins 488 1999-11-19 2016-10-05 26285 ENSG00000156282 OTTHUMG00000081873 uc011acv.3 AJ250712 NM_012131 CCDS13586 P56750 12736707 MGI:2652030 RGD:1307462 CLDN17 617005 +HGNC:2039 CLDN18 claudin 18 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 SFTPJ surfactant associated protein J Claudins 488 2000-01-31 2014-11-19 51208 ENSG00000066405 OTTHUMG00000159762 uc003erp.2 "AF221069|AY102073" NM_001002026 "CCDS3095|CCDS33862" P56856 MGI:1929209 RGD:1359696 CLDN18 609210 objectId:2903 +HGNC:2040 CLDN19 claudin 19 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 Claudins 488 2000-03-15 2015-08-24 149461 ENSG00000164007 OTTHUMG00000007524 uc001chu.3 AK096063 NM_148960 "CCDS471|CCDS44125|CCDS53306" Q8N6F1 MGI:3033992 RGD:1305000 CLDN19 610036 120628 +HGNC:2042 CLDN20 claudin 20 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 Claudins 488 2000-03-15 2016-10-05 49861 ENSG00000171217 OTTHUMG00000015882 uc003qql.2 BC020838 NM_001001346 CCDS5249 P56880 16836752 MGI:3646757 RGD:1595446 CLDN20 +HGNC:2044 CLDN22 claudin 22 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 CLDN21 Claudins 488 2000-05-19 2015-08-28 53842 ENSG00000177300 OTTHUMG00000160627 uc010isa.2 AK098064 NM_001111319 CCDS43286 Q8N7P3 MGI:1922927 RGD:1305271 CLDN22 +HGNC:17591 CLDN23 claudin 23 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 CLDNL Claudins 488 2004-06-14 2006-04-12 137075 ENSG00000253958 OTTHUMG00000163674 uc003wsi.4 AK123547 NM_194284 CCDS55195 Q96B33 12736707 MGI:1919158 RGD:1309001 CLDN23 609203 +HGNC:37200 CLDN24 claudin 24 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 CLDN21 claudin 21 Claudins 488 2009-09-22 2015-09-01 100132463 ENSG00000185758 OTTHUMG00000160628 uc021xva.1 XM_001714660 CCDS54824 A6NM45 12736707 MGI:3712484 RGD:1562043 CLDN24 +HGNC:37218 CLDN25 claudin 25 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 Claudins 488 2009-09-22 2009-09-22 644672 ENSG00000228607 OTTHUMG00000168193 uc009yyw.2 NM_001101389 CCDS44736 C9JDP6 MGI:3642767 RGD:2322263 CLDN25 +HGNC:51259 CLDN34 claudin 34 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 2015-03-18 2015-09-07 100288814 ENSG00000234469 OTTHUMG00000189259 XM_006724448 CCDS75951 H7C241 23726886 MGI:3645962 RGD:1594343 +HGNC:1322 CLDND1 claudin domain containing 1 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 C3orf4 chromosome 3 open reading frame 4 2000-08-11 2005-12-23 2005-12-23 2016-10-05 56650 ENSG00000080822 OTTHUMG00000160050 uc003dss.4 AF116664 NM_019895 "CCDS2930|CCDS43116|CCDS46877" Q9NY35 MGI:2447860 RGD:1359273 CLDND1 +HGNC:28511 CLDND2 claudin domain containing 2 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 MGC33839 2006-03-31 2014-11-19 125875 ENSG00000160318 OTTHUMG00000182901 uc002pwi.1 BC029518 NM_152353 CCDS12829 Q8NHS1 12477932 MGI:1921526 RGD:1566413 CLDND2 +HGNC:24355 CLEC1A C-type lectin domain family 1 member A protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "CLEC1|MGC34328" C-type lectin domain family 1, member A C-type lectin domain family 494 2005-02-09 2016-03-08 2016-10-05 51267 ENSG00000150048 OTTHUMG00000168504 uc001qxb.4 AY358587 NM_016511 "CCDS8612|CCDS73443|CCDS76528" Q8NC01 "10671229|11745369" MGI:2444151 RGD:1566110 CLEC1A 606782 +HGNC:24356 CLEC1B C-type lectin domain family 1 member B protein-coding gene gene with protein product Approved 12p13.31-p13.2 12p13.31-p13.2 CLEC2 C-type lectin domain family 1, member B C-type lectin domain family 494 2005-02-09 2015-12-16 2016-10-11 51266 ENSG00000165682 OTTHUMG00000168502 uc001qwu.5 AF124841 NM_016509 "CCDS41751|CCDS41752" Q9P126 "10671229|11745369" MGI:1913287 RGD:1563517 CLEC1B 606783 +HGNC:24191 CLEC2A C-type lectin domain family 2 member A protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "UNQ5792|INPE5792|KACL|PILAR" "keratinocyte-associated C-type lectin|proliferation-induced lymphocyte-associated receptor" C-type lectin domain family 2, member A C-type lectin domain family 494 2005-02-09 2015-12-16 2015-12-16 387836 ENSG00000188393 OTTHUMG00000140393 uc009zhc.2 AY359126 NM_207375 "CCDS44829|CCDS8606" Q6UVW9 12975309 MGI:3522133 CLEC2A 612087 +HGNC:2053 CLEC2B C-type lectin domain family 2 member B protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "AICL|HP10085" CLECSF2 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 2 (activation-induced)|C-type lectin domain family 2, member B" C-type lectin domain family 494 1999-05-07 2005-02-09 2015-12-16 2016-10-05 9976 ENSG00000110852 OTTHUMG00000168483 uc001qwn.4 X96719 NM_005127 CCDS8605 Q92478 9038101 CLEC2B 603242 +HGNC:14351 CLEC2D C-type lectin domain family 2 member D protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "LLT1|CLAX|OCIL" "C-type lectin related f|lectin-like transcript 1" "C-type lectin superfamily 2, member D|C-type lectin domain family 2, member D" C-type lectin domain family 494 2005-02-09 2015-12-16 2015-12-16 29121 ENSG00000069493 OTTHUMG00000168369 uc001qwg.4 AF133299 NM_013269 "CCDS8602|CCDS31741|CCDS55800|CCDS55801|CCDS55802" Q9UHP7 RGD:620070 CLEC2D 605659 +HGNC:21969 CLEC2L C-type lectin domain family 2 member L protein-coding gene gene with protein product Approved 7q34 07q34 FLJ32986 C-type lectin domain family 2, member L C-type lectin domain family 494 2005-02-09 2015-12-16 2015-12-16 154790 ENSG00000236279 OTTHUMG00000164900 uc010lnd.4 AK057548 NM_001080511 CCDS47724 P0C7M8 MGI:2141402 RGD:1565373 CLEC2L +HGNC:2052 CLEC3A C-type lectin domain family 3 member A protein-coding gene gene with protein product Approved 16q23.1 16q23.1 CLECSF1 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 1 (cartilage-derived)|C-type lectin domain family 3, member A" C-type lectin domain family 494 1998-10-12 2005-02-11 2015-12-16 2016-10-05 10143 ENSG00000166509 OTTHUMG00000137620 uc002ffh.6 AF077345 NM_005752 CCDS10927 O75596 10524194 MGI:2685642 RGD:1306295 CLEC3A 613588 +HGNC:11891 CLEC3B C-type lectin domain family 3 member B protein-coding gene gene with protein product Approved 3p21.31 03p21.31 TN TNA "tetranectin (plasminogen binding protein)|C-type lectin domain family 3, member B" C-type lectin domain family 494 1993-08-26 2005-02-09 2015-12-16 2016-10-05 7123 ENSG00000163815 OTTHUMG00000133087 uc003cok.5 NM_003278 "CCDS2726|CCDS77730" P05452 MGI:104540 RGD:1311031 CLEC3B 187520 +HGNC:13257 CLEC4A C-type lectin domain family 4 member A protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "DCIR|DDB27|CD367" CLECSF6 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 6|C-type lectin domain family 4, member A" "CD molecules|C-type lectin domain family" "471|494" 2001-02-01 2005-02-09 2015-12-16 2016-10-05 50856 ENSG00000111729 OTTHUMG00000168571 uc001qtz.1 AJ133532 NM_194450 "CCDS8590|CCDS8591|CCDS8592|CCDS41745" Q9UMR7 10438934 MGI:1349412 RGD:1359528 CLEC4A 605306 +HGNC:13258 CLEC4C C-type lectin domain family 4 member C protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "HECL|DLEC|BDCA2|CD303" "CLECSF11|CLECSF7" "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 7|C-type lectin domain family 4, member C" "CD molecules|C-type lectin domain family" "471|494" 2000-12-21 2005-02-11 2015-12-16 2016-10-05 170482 ENSG00000198178 OTTHUMG00000168441 uc001qth.1 AF325460 NM_203503 "CCDS8583|CCDS8584" Q8WTT0 "11031109|11536172" MGI:1917060 CLEC4C 606677 CD303 +HGNC:14554 CLEC4D C-type lectin domain family 4 member D protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "Mpcl|CD368" CLECSF8 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 8|C-type lectin domain family 4, member D" "CD molecules|C-type lectin domain family" "471|494" 2004-10-20 2005-02-11 2015-12-16 2015-12-16 338339 ENSG00000166527 OTTHUMG00000168674 uc001qun.4 AF411850 NM_080387 CCDS8593 Q8WXI8 MGI:1298389 RGD:1303339 CLEC4D 609964 +HGNC:14555 CLEC4E C-type lectin domain family 4 member E protein-coding gene gene with protein product Approved 12p13.31 12p13.31 mincle Macrophage-inducible C-type lectin CLECSF9 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 9|C-type lectin domain family 4, member E" C-type lectin domain family 494 2001-02-01 2005-02-09 2015-12-16 2015-12-16 26253 ENSG00000166523 OTTHUMG00000168675 uc001quo.2 AB024718 NM_014358 CCDS8594 Q9ULY5 10528209 MGI:1861232 RGD:1359298 CLEC4E 609962 +HGNC:25357 CLEC4F C-type lectin domain family 4 member F protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "FLJ39110|KCLR" CLECSF13 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 13|C-type lectin domain family 4, member F" C-type lectin domain family 494 2004-02-16 2005-02-11 2015-12-16 2015-12-16 165530 ENSG00000152672 OTTHUMG00000129713 uc002shf.4 AK096429 NM_173535 "CCDS1910|CCDS82464" Q8N1N0 "8889548|1846367" MGI:1859834 RGD:621062 CLEC4F +HGNC:24591 CLEC4G C-type lectin domain family 4 member G protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "UNQ431|LSECtin" "C-type lectin superfamily 4, member G|C-type lectin domain family 4, member G" C-type lectin domain family 494 2005-02-09 2015-12-16 2015-12-16 339390 ENSG00000182566 OTTHUMG00000182519 uc002mhp.4 AY358431 NM_198492 CCDS12185 Q6UXB4 12975309 MGI:1923113 RGD:1597482 CLEC4G 616256 +HGNC:33502 CLEC4GP1 C-type lectin domain family 4 member G pseudogene 1 pseudogene pseudogene Approved 19p13.2 19p13.2 C-type lectin domain family 4, member G pseudogene 1 2007-06-21 2015-12-16 2015-12-16 440508 ENSG00000268297 OTTHUMG00000182531 BC047593 NR_002931 PGOHUM00000295177 +HGNC:13523 CLEC4M C-type lectin domain family 4 member M protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "HP10347|DC-SIGNR|LSIGN|DCSIGNR|DC-SIGN2" "CD209L|CD299" "CD299 antigen|C-type lectin domain family 4, member M" "CD molecules|C-type lectin domain family" "471|494" 2000-09-19 2005-02-11 2015-12-16 2016-10-05 10332 ENSG00000104938 OTTHUMG00000182432 uc010dvt.3 AB015629 NM_014257 "CCDS12187|CCDS59346|CCDS59347|CCDS59348" Q9H2X3 10072769 "MGI:1916415|MGI:2157942|MGI:2157945|MGI:2157947|MGI:2157948" CLEC4M 605872 CD299 +HGNC:2054 CLEC5A C-type lectin domain family 5 member A protein-coding gene gene with protein product Approved 7q34 07q34 MDL-1 CLECSF5 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 5|C-type lectin domain family 5, member A" C-type lectin domain family 494 1999-10-19 2005-02-09 2015-12-16 2015-12-16 23601 ENSG00000258227 OTTHUMG00000157173 uc003vwv.1 NM_013252 "CCDS5870|CCDS75670" Q9NY25 10449773 MGI:1345151 RGD:1584755 CLEC5A 604987 +HGNC:14556 CLEC6A C-type lectin domain family 6 member A protein-coding gene gene with protein product Approved 12p13.31 12p13.31 dectin-2 CLECSF10 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 10|C-type lectin domain family 6, member A" C-type lectin domain family 494 2004-11-18 2005-02-11 2015-12-16 2016-10-05 93978 ENSG00000205846 OTTHUMG00000168672 uc001qum.2 AY321309 NM_001007033 CCDS31739 Q6EIG7 MGI:1861231 RGD:1359354 CLEC6A 613579 +HGNC:14558 CLEC7A C-type lectin domain family 7 member A protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "dectin-1|hDectin-1|CD369|SCARE2" CLECSF12 "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 12|C-type lectin domain family 7, member A" "CD molecules|C-type lectin domain family|Scavenger receptors" "471|494|1253" 2001-02-01 2005-02-09 2015-12-16 2016-10-12 64581 ENSG00000172243 OTTHUMG00000133597 uc001qxf.4 AY009090 NM_197954 "CCDS8613|CCDS8614|CCDS8617|CCDS41753|CCDS41754|CCDS53744" Q9BXN2 MGI:1861431 RGD:1565140 LRG_179|http://www.lrg-sequence.org/LRG/LRG_179 CLEC7A 606264 225288 +HGNC:26705 CLEC9A C-type lectin domain family 9 member A protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "UNQ9341|HEEE9341|CD370|DNGR-1" C-type lectin domain family 9, member A "CD molecules|C-type lectin domain family" "471|494" 2005-02-09 2015-12-16 2016-10-05 283420 ENSG00000197992 OTTHUMG00000168398 uc001qxa.4 NM_207345 CCDS8611 Q6UXN8 MGI:2444608 RGD:1562513 CLEC9A 612252 +HGNC:16916 CLEC10A C-type lectin domain family 10 member A protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "HML2|HML|CD301" macrophage lectin 2 (calcium dependent) "CLECSF13|CLECSF14" "C-type (calcium dependent, carbohydrate-recognition domain) lectin, superfamily member 14 (macrophage-derived)|C-type lectin domain family 10, member A" "CD molecules|C-type lectin domain family" "471|494" 2003-08-06 2005-02-11 2015-12-16 2016-10-05 10462 ENSG00000132514 OTTHUMG00000177939 uc002gej.4 D50532 NM_006344 "CCDS11087|CCDS45597|CCDS82049" Q8IUN9 8598452 "MGI:96975|MGI:2385729" RGD:621158 CLEC10A 605999 CD301 +HGNC:10576 CLEC11A C-type lectin domain family 11 member A protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "P47|LSLCL|CLECSF3" SCGF "stem cell growth factor; lymphocyte secreted C-type lectin|C-type lectin domain family 11, member A" C-type lectin domain family 494 1997-10-30 2005-02-11 2015-12-16 2016-10-05 6320 ENSG00000105472 OTTHUMG00000182866 uc002psy.4 AF087658 NM_002975 CCDS12800 Q9Y240 "9207134|9442024" MGI:1298219 RGD:3627 CLEC11A 604713 +HGNC:31713 CLEC12A C-type lectin domain family 12 member A protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CLL-1|MICL|CD371|DCAL-2" "dendritic cell-associated lectin 2|myeloid inhibitory C-type lectin-like receptor" C-type lectin domain family 12, member A "CD molecules|C-type lectin domain family" "471|494" 2005-02-09 2015-12-16 2015-12-16 160364 ENSG00000172322 OTTHUMG00000168396 uc001qwq.3 AY498550 NM_138337 "CCDS8608|CCDS8609|CCDS55803|CCDS73442" Q5QGZ9 MGI:3040968 RGD:1592991 CLEC12A 612088 +HGNC:31966 CLEC12B C-type lectin domain family 12 member B protein-coding gene gene with protein product Approved 12p13.2 12p13.2 C-type lectin domain family 12, member B C-type lectin domain family 494 2007-07-27 2015-12-16 2015-12-16 387837 ENSG00000256660 OTTHUMG00000168397 uc001qwz.3 AK128243 NM_205852 "CCDS8610|CCDS44830" Q2HXU8 17562706 MGI:1918433 RGD:1560487 CLEC12B +HGNC:19832 CLEC14A C-type lectin domain family 14 member A protein-coding gene gene with protein product Approved 14q21.1 14q21.1 C14orf27 "chromosome 14 open reading frame 27|C-type lectin domain family 14, member A" C-type lectin domain family 494 2003-01-13 2005-02-11 2015-12-16 2015-12-16 161198 ENSG00000176435 OTTHUMG00000140248 uc001wum.3 NM_175060 CCDS9667 Q86T13 MGI:1914114 RGD:1306232 CLEC14A 616845 +HGNC:29013 CLEC16A C-type lectin domain family 16 member A protein-coding gene gene with protein product Approved 16p13.13 16p13.13 Gop-1 KIAA0350 "KIAA0350|C-type lectin domain family 16, member A" C-type lectin domain family 494 2006-08-25 2007-07-17 2015-12-16 2015-12-16 23274 ENSG00000038532 OTTHUMG00000152915 uc059qub.1 AB002348 NM_015226 "CCDS45409|CCDS58423" Q2KHT3 "9205841|17632545" MGI:1921624 RGD:1305773 CLEC16A 611303 +HGNC:34520 CLEC17A C-type lectin domain family 17 member A protein-coding gene gene with protein product Approved 19p13.12 19p13.12 FLJ45910 prolectin C-type lectin domain family 17, member A C-type lectin domain family 494 2008-08-15 2015-12-16 2016-04-25 388512 ENSG00000187912 OTTHUMG00000169312 uc010dzn.3 AK127809 NM_207390 "CCDS46002|CCDS56087" Q6ZS10 19419970 CLEC17A 616838 +HGNC:30388 CLEC18A C-type lectin domain family 18 member A protein-coding gene gene with protein product Approved 16q22.1 16q22.1 MRCL mannose receptor-like C-type lectin domain family 18, member A C-type lectin domain family 494 2009-03-06 2009-03-10 2015-12-16 2015-12-16 348174 ENSG00000157322 OTTHUMG00000137574 uc010vlo.3 AF428259 NM_182619 CCDS10886 A5D8T8 12975309 MGI:2672935 RGD:1559899 CLEC18A 616571 +HGNC:33849 CLEC18B C-type lectin domain family 18 member B protein-coding gene gene with protein product Approved 16q23.1 16q23.1 C-type lectin domain family 18, member B C-type lectin domain family 494 2009-03-06 2009-03-10 2015-12-16 2016-10-05 497190 ENSG00000140839 OTTHUMG00000176998 uc002fct.4 AY358373 NM_001011880 CCDS32484 Q6UXF7 MGI:2672935 CLEC18B 616572 +HGNC:28538 CLEC18C C-type lectin domain family 18 member C protein-coding gene gene with protein product Approved 16q22.1 16q22.1 MGC34761 C-type lectin domain family 18, member C C-type lectin domain family 494 2009-03-06 2009-03-10 2015-12-16 2015-12-16 283971 ENSG00000157335 OTTHUMG00000176982 uc059wnv.1 AL833339 NM_173619 CCDS32473 Q8NCF0 12477932 MGI:2672935 CLEC18C 616573 +HGNC:34522 CLEC19A C-type lectin domain family 19 member A protein-coding gene gene with protein product Approved 16p12.3 16p12.3 C-type lectin domain family 19, member A C-type lectin domain family 494 2009-07-20 2015-12-16 2015-12-16 728276 ENSG00000261210 OTTHUMG00000177218 uc002dga.6 NM_00125672 CCDS81953 Q6UXS0 RGD:6503302 CLEC19A +HGNC:24462 CLECL1 C-type lectin like 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 DCAL1 dendritic cell associated lectin 1 C-type lectin-like 1 2007-06-21 2015-12-16 2015-12-16 160365 ENSG00000184293 OTTHUMG00000168459 uc001qwj.4 AF518873 NM_172004 "CCDS8603|CCDS73441" Q8IZS7 12421943 CLECL1 607467 +HGNC:2060 CLGN calmegin protein-coding gene gene with protein product Approved 4q31.1 04q31.1 1997-01-14 2016-10-05 1047 ENSG00000153132 OTTHUMG00000133414 uc003iii.4 D86322 NM_004362 CCDS3751 O14967 MGI:107472 RGD:1592643 CLGN 601858 +HGNC:26453 CLHC1 clathrin heavy chain linker domain containing 1 protein-coding gene gene with protein product Approved 2p16.1 02p16.1 FLJ31438 C2orf63 chromosome 2 open reading frame 63 2007-12-07 2012-08-03 2012-08-03 2014-11-19 130162 ENSG00000162994 OTTHUMG00000151918 uc002ryj.3 NM_152385 "CCDS33201|CCDS46287" Q8NHS4 MGI:1920574 RGD:1307937 +HGNC:2062 CLIC1 chloride intracellular channel 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "NCC27|p64CLCP" Chloride intracellular channels 307 1997-07-01 2016-10-05 1192 ENSG00000213719 OTTHUMG00000031103 uc063yyp.1 U93205 NM_001288 CCDS4719 O00299 9139710 MGI:2148924 RGD:1303043 CLIC1 602872 +HGNC:32691 CLIC1P1 chloride intracellular channel 1 pseudogene 1 pseudogene pseudogene Approved 12q24.31 12q24.31 2006-04-07 2014-11-19 390363 ENSG00000231313 OTTHUMG00000169145 NG_021736 +HGNC:2063 CLIC2 chloride intracellular channel 2 protein-coding gene gene with protein product Approved Xq28 Xq28 XAP121 Chloride intracellular channels 307 1997-10-17 2015-09-07 1193 ENSG00000155962 OTTHUMG00000022660 uc004fnf.5 AJ000217 NM_001289 CCDS14767 O15247 9339381 RGD:1306580 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CLIC2 CLIC2 300138 327331 +HGNC:2064 CLIC3 chloride intracellular channel 3 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 Chloride intracellular channels 307 1999-01-19 2015-09-07 9022 ENSG00000169583 OTTHUMG00000020954 uc004ckj.2 AF102166 NM_004669 CCDS7021 O95833 9880541 MGI:1916704 RGD:1307249 CLIC3 606533 +HGNC:13518 CLIC4 chloride intracellular channel 4 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "DKFZP566G223|CLIC4L|P64H1|H1|huH1|p64H1" Chloride intracellular channels 307 2000-10-31 2016-10-05 25932 ENSG00000169504 OTTHUMG00000003327 uc001bjo.3 AF097330 NM_013943 CCDS256 Q9Y696 "9139710|10070163" MGI:1352754 RGD:61857 CLIC4 606536 +HGNC:49797 CLIC4P1 chloride intracellular channel 4 pseudogene 1 pseudogene pseudogene Approved 9p21.3 09p21.3 2014-02-21 2014-02-21 646609 ENSG00000236739 OTTHUMG00000019694 NG_021641 PGOHUM00000236413 +HGNC:49798 CLIC4P2 chloride intracellular channel 4 pseudogene 2 pseudogene pseudogene Approved 19p13.3 19p13.3 2014-02-21 2014-02-21 100130584 ENSG00000269546 OTTHUMG00000181833 NG_021738 PGOHUM00000234123 +HGNC:49799 CLIC4P3 chloride intracellular channel 4 pseudogene 3 pseudogene pseudogene Approved Xp11.4 Xp11.4 2014-02-21 2014-02-21 442447 ENSG00000237931 OTTHUMG00000021365 NG_022657 PGOHUM00000241721 +HGNC:13517 CLIC5 chloride intracellular channel 5 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 DFNB102 Chloride intracellular channels 307 2000-10-31 2016-10-05 53405 ENSG00000112782 OTTHUMG00000014775 uc003oxu.5 AF216941 XM_017010953 "CCDS4914|CCDS47438|CCDS59022" Q9NZA1 "10793131|24781754" MGI:1917912 RGD:620659 CLIC5 607293 406620 +HGNC:2065 CLIC6 chloride intracellular channel 6 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 CLIC5 CLIC1L Chloride intracellular channels 307 2000-05-23 2015-08-28 54102 ENSG00000159212 OTTHUMG00000086237 uc002yuf.2 AF426169 XM_017028406 "CCDS13638|CCDS82669" Q96NY7 10830953 MGI:2146607 RGD:727938 CLIC6 615321 +HGNC:23186 CLINT1 clathrin interactor 1 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "ENTH|KIAA0171|EPNR|CLINT" 2006-06-13 2006-06-13 9685 ENSG00000113282 OTTHUMG00000163527 uc003lxj.3 AF434813 NM_014666 "CCDS47330|CCDS56388|CCDS56389" Q14677 "12213833|12429846" MGI:2144243 RGD:1303328 CLINT1 607265 +HGNC:10461 CLIP1 CAP-Gly domain containing linker protein 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "CYLN1|CLIP170|CLIP|CLIP-170" restin RSN "restin (Reed-Steinberg cell-expressed intermediate filament-associated protein)|CAP-GLY domain containing linker protein 1" 1993-06-10 2007-01-05 2015-11-17 2016-10-05 6249 ENSG00000130779 OTTHUMG00000168922 uc001ucg.2 NM_002956 "CCDS9232|CCDS9233|CCDS58285" P30622 8222754 MGI:1928401 RGD:67404 CLIP1 179838 406382 +HGNC:48586 CLIP1-AS1 CLIP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q24.31 12q24.31 2014-03-26 2014-03-26 100507066 ENSG00000257097 OTTHUMG00000168927 NR_045382 +HGNC:2586 CLIP2 CAP-Gly domain containing linker protein 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "CLIP-115|KIAA0291|WSCR4|CLIP|WSCR3" "WBSCR4|CYLN2|WBSCR3" "cytoplasmic linker 2|Williams-Beuren syndrome chromosome region 3|CAP-GLY domain containing linker protein 2" 1997-09-12 2007-01-04 2015-11-17 2015-11-17 7461 ENSG00000106665 OTTHUMG00000022980 uc003uam.3 AB006629 NM_003388 "CCDS5569|CCDS5570" Q9UDT6 "8812460|9799601" MGI:1313136 RGD:62019 CLIP2 603432 120630 +HGNC:24314 CLIP3 CAP-Gly domain containing linker protein 3 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "CLIPR-59|RSNL1" "CLIP-170-related|restin-like 1" CAP-GLY domain containing linker protein 3 Ankyrin repeat domain containing 403 2007-01-04 2015-11-17 2015-11-17 25999 ENSG00000105270 OTTHUMG00000181747 uc002ocz.3 AJ427922 NM_015526 CCDS12486 Q96DZ5 11854307 MGI:1923936 RGD:1306245 CLIP3 607382 +HGNC:26108 CLIP4 CAP-Gly domain containing linker protein family member 4 protein-coding gene gene with protein product Approved 2p23.2 02p23.2 FLJ21069 RSNL2 "restin-like 2|CAP-GLY domain containing linker protein family, member 4" Ankyrin repeat domain containing 403 2004-11-29 2007-01-04 2015-11-17 2016-10-05 79745 ENSG00000115295 OTTHUMG00000097837 uc002rmv.4 AK024722 NM_024692 "CCDS1770|CCDS74502" Q8N3C7 MGI:1919100 RGD:1311049 CLIP4 +HGNC:2068 CLK1 CDC like kinase 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 CDC-like kinase 1 CDC like kinases 480 1991-08-07 2015-11-12 2016-10-05 1195 ENSG00000013441 OTTHUMG00000132784 uc002uwe.3 L29219 NM_004071 "CCDS2331|CCDS54427" P49759 9856501 MGI:107403 RGD:1311469 CLK1 601951 objectId:1990 +HGNC:2069 CLK2 CDC like kinase 2 protein-coding gene gene with protein product Approved 1q22 01q22 clk2 CDC-like kinase 2 CDC like kinases 480 1998-02-11 2015-11-12 2016-10-05 1196 ENSG00000176444 OTTHUMG00000035873 uc001fjw.4 L29218 NM_003993 "CCDS1107|CCDS72939" P49760 "7990150|9856501" MGI:1098669 CLK2 602989 objectId:1991 +HGNC:2070 CLK2P1 CDC like kinase 2, pseudogene 1 pseudogene pseudogene Approved 7p15.3 07p15.3 CLK2P "CDC-like kinase 2, pseudogene|CDC-like kinase 2, pseudogene 1" 1998-03-20 2015-02-06 2015-11-12 2015-11-12 1197 ENSG00000232553 OTTHUMG00000152684 BC022025 NR_002711 "7990150|9856501" PGOHUM00000302070 +HGNC:2071 CLK3 CDC like kinase 3 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 clk3 CDC-like kinase 3 CDC like kinases 480 1998-02-11 2015-11-12 2016-10-05 1198 ENSG00000179335 OTTHUMG00000141320 uc002ayg.4 L29220 XM_017021905 "CCDS10265|CCDS45304" P49761 "7990150|9856501" MGI:1098670 RGD:621259 CLK3 602990 objectId:1992 +HGNC:49785 CLK3P1 CDC like kinase 3 pseudogene 1 pseudogene pseudogene Approved 9p22.1 09p22.1 CDC-like kinase 3 pseudogene 1 2014-02-14 2015-11-12 2015-11-12 646505 NG_007302 PGOHUM00000235982 +HGNC:49786 CLK3P2 CDC like kinase 3 pseudogene 2 pseudogene pseudogene Approved 1q44 01q44 CDC-like kinase 3 pseudogene 2 2014-02-14 2015-11-12 2015-11-12 100128834 ENSG00000226191 OTTHUMG00000040208 NG_007301 PGOHUM00000259538 +HGNC:13659 CLK4 CDC like kinase 4 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 CDC-like kinase 4 CDC like kinases 480 2001-11-28 2015-11-12 2016-10-05 57396 ENSG00000113240 OTTHUMG00000130893 uc003mjf.2 AF294429 NM_020666 CCDS4437 Q9HAZ1 11170754 MGI:1098551 RGD:1310274 CLK4 607969 objectId:1993 +HGNC:29841 CLLU1 chronic lymphocytic leukemia up-regulated 1 protein-coding gene gene with protein product Approved 12q22 12q22 2005-06-30 2014-11-19 574028 ENSG00000257127 OTTHUMG00000170103 uc001tcf.3 AJ845162 NM_001025233 Q5K131 19726446 CLLU1 616988 +HGNC:24070 CLLU1OS chronic lymphocytic leukemia up-regulated 1 opposite strand protein-coding gene gene with protein product Approved 12q22 12q22 chronic lymphocytic leukemia up-regulated 1 overlapping strand 2005-06-30 2006-03-30 2014-11-19 574016 ENSG00000205057 OTTHUMG00000161990 uc001tcb.1 AJ845168 XM_017019673 CCDS31871 Q5K130 CLLU1OS 616989 +HGNC:19972 CLMN calmin protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "FLJ12383|KIAA1188|KIAA0500" calmin (calponin-like, transmembrane) 2002-12-09 2016-07-05 2016-07-05 79789 ENSG00000165959 OTTHUMG00000171629 uc001yef.3 AB033014 XM_017021646 CCDS9933 Q96JQ2 11386753 MGI:2136957 RGD:1306741 CLMN 611121 +HGNC:24039 CLMP CXADR like membrane protein protein-coding gene gene with protein product Approved 11q24.1 11q24.1 "ASAM|FLJ22415|ACAM" "adipocyte-specific adhesion molecule|coxsackie- and adenovirus receptor-like membrane protein|adipocyte adhesion molecule" "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2011-01-27 2016-06-21 2016-10-05 79827 ENSG00000166250 OTTHUMG00000166031 uc001pyt.4 BC009371 NM_024769 CCDS8441 Q9H6B4 "12851705|14573622" MGI:1918816 RGD:708569 CLMP 611693 293034 +HGNC:2074 CLN3 CLN3, battenin protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "JNCL|BTN1" juvenile neuronal ceroid lipofuscinosis BTS "Batten, Spielmeyer-Vogt disease|ceroid-lipofuscinosis, neuronal 3" 1989-06-06 2016-06-10 2016-10-12 1201 ENSG00000188603 OTTHUMG00000097024 uc002dpo.4 U32680 NM_001042432 "CCDS10632|CCDS73853|CCDS73854|CCDS73855" Q13286 18317235 MGI:107537 RGD:1359537 "Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/|Mutations of the CLN3 Gene|http://www.retina-international.org/files/sci-news/cln3mut.htm|LRG_689|http://www.lrg-sequence.org/LRG/LRG_689" CLN3 607042 120638 +HGNC:2076 CLN5 ceroid-lipofuscinosis, neuronal 5 protein-coding gene gene with protein product Approved 13q22.3 13q22.3 1993-11-03 2016-10-12 1203 ENSG00000102805 OTTHUMG00000017100 uc001vkc.4 NM_006493 CCDS9456 O75503 "7942847|8661106" MGI:2442253 RGD:1306965 "Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/|LRG_692|http://www.lrg-sequence.org/LRG/LRG_692" CLN5 608102 120641 +HGNC:2077 CLN6 ceroid-lipofuscinosis, neuronal 6, late infantile, variant protein-coding gene gene with protein product Approved 15q23 15q23 "FLJ20561|HsT18960|nclf" 1996-10-11 2016-10-12 54982 ENSG00000128973 OTTHUMG00000133286 uc002arf.3 AK000568 NM_017882 CCDS10227 Q9NWW5 "9097964|11727201" MGI:2159324 RGD:1309714 "Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/|LRG_832|http://www.lrg-sequence.org/LRG/LRG_832" CLN6 606725 120643 +HGNC:2079 CLN8 ceroid-lipofuscinosis, neuronal 8 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 FLJ39417 "EPMR|C8orf61" "chromosome 8 open reading frame 61|epilepsy, progressive with mental retardation" 1993-12-15 2015-06-02 2016-10-12 2055 ENSG00000182372 OTTHUMG00000090343 uc003wpo.5 AF123761 NM_018941 CCDS5956 Q9UBY8 "10508524|23160995" MGI:1349447 RGD:1359518 "Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/|LRG_691|http://www.lrg-sequence.org/LRG/LRG_691" CLN8 607837 120648 +HGNC:32782 CLN9 ceroid-lipofuscinosis, neuronal 9 phenotype phenotype only Approved reserved reserved 2006-05-08 2015-03-30 497231 "15349861|16303764" 609055 +HGNC:17438 CLNK cytokine dependent hematopoietic cell linker protein-coding gene gene with protein product Approved 4p16.1 04p16.1 MIST mast cell immunoreceptor signal transducer SH2 domain containing 741 2008-11-20 2016-01-18 2016-01-18 116449 ENSG00000109684 OTTHUMG00000160062 uc003gmo.5 AB032369 NM_052964 CCDS47024 Q7Z7G1 "10562326|10744659" MGI:1351468 RGD:1562417 CLNK 611434 +HGNC:2080 CLNS1A chloride nucleotide-sensitive channel 1A protein-coding gene gene with protein product Approved 11q14.1 11q14.1 ICln methylosome subunit pICln CLCI chloride channel, nucleotide-sensitive, 1A 1997-10-16 2016-02-05 2016-02-05 1207 ENSG00000074201 OTTHUMG00000165143 uc001oyk.4 U17899 NM_001293 "CCDS8252|CCDS81600|CCDS81601|CCDS81602" P54105 "7887970|8975725" MGI:109638 RGD:61884 CLNS1A 602158 +HGNC:2081 CLNS1AP1 chloride nucleotide-sensitive channel 1A pseudogene 1 pseudogene pseudogene Approved 6p12.1 06p12.1 ICln CLNS1B "chloride channel, nucleotide-sensitive, 1B|chloride channel, nucleotide-sensitive, 1A pseudogene 1" 1997-10-16 2010-12-17 2016-02-05 2016-10-05 1204 ENSG00000213335 OTTHUMG00000014894 NG_002905 "8975725|9524223" PGOHUM00000243207 +HGNC:2082 CLOCK clock circadian regulator protein-coding gene gene with protein product Approved 4q12 04q12 "KIAA0334|KAT13D|bHLHe8" "clock (mouse) homolog|clock homolog (mouse)" "Basic helix-loop-helix proteins|Lysine acetyltransferases" "420|486" 1999-04-19 2012-12-07 2015-09-11 9575 ENSG00000134852 OTTHUMG00000102141 uc003hba.3 AF011568 NM_004898 CCDS3500 O15516 10198158 MGI:99698 RGD:620271 CLOCK 601851 objectId:2649 +HGNC:16999 CLP1 cleavage and polyadenylation factor I subunit 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "HEAB|hClp1" "ATP/GTPbinding protein|polyribonucleotide 5'-hydroxyl-kinase" CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae) 2006-11-13 2012-10-02 2015-08-24 10978 ENSG00000172409 OTTHUMG00000167146 uc001nkw.4 BC000446 NM_006831 "CCDS7964|CCDS44600" Q92989 "8896421|11060040" MGI:2138968 RGD:1307679 CLP1 608757 422996 2.7.1.78 +HGNC:30664 CLPB ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "HSP78|SKD3|FLJ13152|ANKCLB" "suppressor of potassium transport defect 3|ankyrin-repeat containing bacterial clp fusion" ClpB caseinolytic peptidase B homolog (E. coli) "Ankyrin repeat domain containing|AAA ATPases|Chaperonins" "403|413|587" 2005-10-04 2015-03-20 2015-08-24 81570 ENSG00000162129 OTTHUMG00000167902 uc001osj.5 BC006404 NM_030813 "CCDS8215|CCDS58152|CCDS58153|CCDS58154" Q9H078 "7835694|25650066|25710177" MGI:1100517 RGD:621328 CLPB 616254 449270 +HGNC:2084 CLPP caseinolytic mitochondrial matrix peptidase proteolytic subunit protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ATP-dependent protease ClpAP (E. coli), proteolytic subunit, human "ClpP (caseinolytic protease, ATP-dependent, proteolytic subunit, E. coli) homolog|ClpP caseinolytic protease, ATP-dependent, proteolytic subunit homolog (E. coli)|ClpP caseinolytic peptidase, ATP-dependent, proteolytic subunit homolog (E. coli)" AAA ATPases 413 1999-09-20 2013-09-12 2014-11-19 8192 ENSG00000125656 OTTHUMG00000180779 uc002mem.2 Z50853 NM_006012 CCDS12162 Q16740 "8543061|23360988" MGI:1858213 RGD:1588583 CLPP 601119 331967 S14.003 +HGNC:2085 CLPS colipase protein-coding gene gene with protein product Approved 6p21.31 06p21.31 pancreatic colipase colipase, pancreatic 1990-10-05 2015-11-18 2015-11-18 1208 ENSG00000137392 OTTHUMG00000014578 uc003ole.3 NM_001832 "CCDS4811|CCDS75437|CCDS75438" P04118 2045105 MGI:88421 RGD:2363 CLPS 120105 +HGNC:21251 CLPSL1 colipase like 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 dJ510O8.6 C6orf127 "chromosome 6 open reading frame 127|colipase-like 1" 2003-11-26 2012-02-06 2015-11-18 2015-11-18 340204 ENSG00000204140 OTTHUMG00000014582 uc003old.5 NM_001010886 CCDS43456 A2RUU4 +HGNC:21250 CLPSL2 colipase like 2 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "dJ510O8.5|UNQ3045" C6orf126 "chromosome 6 open reading frame 126|colipase-like 2" 2003-11-26 2012-02-06 2015-11-18 2015-11-18 389383 ENSG00000196748 OTTHUMG00000014581 uc010jvz.3 NM_207409 "CCDS4810|CCDS69095" Q6UWE3 MGI:2685595 RGD:1592336 +HGNC:2087 CLPTM1 CLPTM1, transmembrane protein protein-coding gene gene with protein product Approved 19q13.32 19q13.32 cleft lip and palate associated transmembrane protein 1 1998-04-06 2016-05-10 2016-10-05 1209 ENSG00000104853 OTTHUMG00000180849 uc002pai.5 AF037339 NM_001294 "CCDS12651|CCDS74394|CCDS74395" O96005 9828125 MGI:1927155 RGD:1310959 CLPTM1 604783 +HGNC:24308 CLPTM1L CLPTM1 like protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "FLJ14400|CRR9" cisplatin resistance related protein CLPTM1-like 2006-08-09 2016-06-23 2016-06-23 81037 ENSG00000049656 OTTHUMG00000131015 uc003jch.4 AK027306 NM_030782 CCDS3862 Q96KA5 11162647 MGI:2442892 RGD:1307896 CLPTM1L 612585 +HGNC:49023 CLPTM1LP1 CLPTM1L pseudogene 1 pseudogene pseudogene Approved 1q31.1 01q31.1 2013-08-09 2013-08-09 106480241 ENSG00000271036 OTTHUMG00000184460 NG_043819 PGOHUM00000244375 +HGNC:2088 CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "ClpX (caseinolytic protease X, E. coli) homolog|ClpX caseinolytic protease X homolog (E. coli)|ClpX caseinolytic peptidase X homolog (E. coli)" AAA ATPases 413 2000-03-14 2013-09-12 2015-08-24 10845 ENSG00000166855 OTTHUMG00000133139 uc002aom.4 AJ006267 NM_006660 CCDS10202 O76031 22841477 MGI:1346017 RGD:1304883 CLPX 615611 +HGNC:12605 CLRN1 clarin 1 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "USH3|USH3A|RP61" Usher syndrome 3A 1998-10-23 2006-11-23 2006-11-23 2016-10-12 7401 ENSG00000163646 OTTHUMG00000140368 uc003eyk.1 AF388366 NM_052995 "CCDS3153|CCDS35492|CCDS56285" P58418 "7711740|8975700" MGI:2388124 RGD:628779 "Mutations of the Usher Syndrome Type 3 Gene|http://www.retina-international.org/files/sci-news/ush3mut.htm|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=CLRN1|LRG_700|http://www.lrg-sequence.org/LRG/LRG_700" CLRN1 606397 120653 +HGNC:30895 CLRN1-AS1 CLRN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 UCRP CLRN1OS "clarin 1 opposite strand|CLRN1 antisense RNA 1 (non-protein coding)" 2007-01-05 2011-04-28 2012-08-15 2014-11-19 116933 ENSG00000239265 OTTHUMG00000159846 uc011bny.2 NR_024066 11524702 +HGNC:33939 CLRN2 clarin 2 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 2008-01-17 2015-08-24 645104 ENSG00000249581 OTTHUMG00000160273 uc003gpg.1 NM_001079827 CCDS47032 A0PK11 12080385 MGI:3646230 RGD:1591112 CLRN2 +HGNC:20795 CLRN3 clarin 3 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 "MGC32871|USH3AL1" TMEM12 transmembrane protein 12 2005-10-04 2006-11-23 2006-11-23 2014-11-19 119467 ENSG00000180745 OTTHUMG00000019253 uc001lka.2 BC029478 NM_152311 CCDS7656 Q8NCR9 "12145752|12080385" MGI:2142022 RGD:1305043 CLRN3 +HGNC:19715 CLSPN claspin protein-coding gene gene with protein product Approved 1p34.3 01p34.3 claspin homolog (Xenopus laevis) 2002-11-15 2010-06-24 2014-11-18 63967 ENSG00000092853 OTTHUMG00000004168 uc001bzi.4 AF297866 NM_022111 "CCDS396|CCDS53297|CCDS81299" Q9HAW4 "11090622|12766152" MGI:2445153 RGD:1309083 CLSPN 605434 +HGNC:17447 CLSTN1 calsyntenin 1 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "CSTN1|KIAA0911|CDHR12" cadherin-related family member 12 Cadherin related 24 2002-05-01 2015-09-11 22883 ENSG00000171603 OTTHUMG00000001451 uc001aqi.4 AB020718 NM_001302883 "CCDS105|CCDS30580" O94985 10048485 MGI:1929895 RGD:1306458 CLSTN1 611321 +HGNC:17448 CLSTN2 calsyntenin 2 protein-coding gene gene with protein product Approved 3q23 03q23 "CSTN2|CS2|FLJ39113|CDHR13" cadherin-related family member 13 Cadherin related 24 2002-05-01 2015-09-11 64084 ENSG00000158258 OTTHUMG00000160139 uc003etn.4 AJ278018 NM_022131 CCDS3112 Q9H4D0 12498782 MGI:1929897 RGD:621151 CLSTN2 611323 +HGNC:49095 CLSTN2-AS1 CLSTN2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q23 03q23 2013-09-02 2013-09-02 101927808 ENSG00000250433 OTTHUMG00000160140 AL133103 NR_108084 +HGNC:18371 CLSTN3 calsyntenin 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CSTN3|KIAA0726|CDHR14" cadherin-related family member 14 Cadherin related 24 2002-05-01 2015-09-11 9746 ENSG00000139182 OTTHUMG00000168167 uc001qsr.4 AB018269 NM_014718 CCDS8575 Q9BQT9 12498782 MGI:2178323 RGD:621153 CLSTN3 611324 +HGNC:2090 CLTA clathrin light chain A protein-coding gene gene with protein product Approved 9p13.3 09p13.3 Lca "clathrin, light polypeptide (Lca)|clathrin, light chain A" 1991-08-08 2016-01-18 2016-01-18 1211 ENSG00000122705 OTTHUMG00000019896 uc064tak.1 NM_007096 "CCDS6600|CCDS6601|CCDS43802|CCDS55306|CCDS55307|CCDS83364" P09496 7713494 MGI:894297 RGD:70919 CLTA 118960 +HGNC:2091 CLTB clathrin light chain B protein-coding gene gene with protein product Approved 5q35.2 05q35.2 Lcb "clathrin, light polypeptide (Lcb)|clathrin, light chain B" 1990-10-16 2016-01-18 2016-01-18 1212 ENSG00000175416 OTTHUMG00000130662 uc003meh.4 M20470 XM_017009026 "CCDS4402|CCDS4403" P09497 7713494 MGI:1921575 RGD:621353 CLTB 118970 +HGNC:2092 CLTC clathrin heavy chain protein-coding gene gene with protein product Approved 17q23.1 17q23.1 Hc CLTCL2 "clathrin, heavy polypeptide (Hc)|clathrin, heavy chain|clathrin, heavy polypeptide-like 2|clathrin, heavy chain (Hc)" 1990-10-16 2016-01-18 2016-01-18 1213 ENSG00000141367 OTTHUMG00000134279 uc002ixq.2 X55878 NM_004859 "CCDS32696|CCDS74115" Q00610 "1765375|7584026" MGI:2388633 RGD:2364 CLTC 118955 326742 +HGNC:41321 CLTC-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:2093 CLTCL1 clathrin heavy chain like 1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "CLTD|CLH22|CHC22" CLTCL "clathrin, heavy polypeptide-like 1|clathrin, heavy chain-like 1" 1995-09-08 2016-01-18 2016-10-05 8218 ENSG00000070371 OTTHUMG00000150109 uc032qgb.2 NM_007098 "CCDS46662|CCDS54497" P53675 "8844170|15133132" CLTCL1 601273 457570 +HGNC:2095 CLU clusterin protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "SGP-2|SP-40|TRPM-2|KUB1|CLU1|CLU2" "complement lysis inhibitor|sulfated glycoprotein 2|testosterone-repressed prostate message 2|apolipoprotein J" "CLI|APOJ" clusterin (complement lysis inhibitor, SP-40,40, sulfated glycoprotein 2, testosterone-repressed prostate message 2, apolipoprotein J) 1990-07-26 2006-02-10 2016-10-05 1191 ENSG00000120885 OTTHUMG00000102114 uc003xfz.3 M64722 NM_001831 CCDS47832 P10909 1585460 MGI:88423 RGD:3907 CLU 185430 +HGNC:19009 CLUAP1 clusterin associated protein 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ13297|KIAA0643|FAP22|CFAP22|IFT38" "flagellar associated protein 22, qilin-like protein, homolog (Chlamydomonas)|cilia and flagella associated protein 22" Intraflagellar transport proteins 615 2004-09-16 2015-09-11 23059 ENSG00000103351 OTTHUMG00000177581 uc002cvk.3 BC017070 NM_024793 "CCDS32381|CCDS45398|CCDS81942" Q96AJ1 "15480429|9734811|19253336" MGI:1924029 RGD:1359189 CLUAP1 616787 +HGNC:29094 CLUH clustered mitochondria homolog protein-coding gene gene with protein product Approved 17p13.3 17p13.3 CLU1 KIAA0664 "KIAA0664|clustered mitochondria (cluA/CLU1) homolog" 2005-12-19 2012-11-30 2016-06-21 2016-06-21 23277 ENSG00000132361 OTTHUMG00000177575 uc059zog.1 AB014564 NM_015229 CCDS45572 O75153 25349259 MGI:1921398 RGD:1307222 616184 +HGNC:38416 CLUHP1 clustered mitochondria homolog pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 KIAA0664L1 KIAA0664-like 1 KIAA0664P1 "KIAA0664 pseudogene 1|clustered mitochondria (cluA/CLU1) homolog pseudogene 1" 2010-05-05 2012-11-30 2016-06-27 2016-06-27 100418708 ENSG00000238191 OTTHUMG00000041625 NG_021913 PGOHUM00000305491 +HGNC:38453 CLUHP2 clustered mitochondria homolog pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 KIAA0664L2 KIAA0664-like 2 KIAA0664P2 "KIAA0664 pseudogene 2|clustered mitochondria (cluA/CLU1) homolog pseudogene 2" 2010-05-05 2012-11-30 2016-06-27 2016-06-27 100418709 ENSG00000228945 OTTHUMG00000041967 NG_004636 PGOHUM00000305685 +HGNC:28447 CLUHP3 clustered mitochondria homolog pseudogene 3 pseudogene pseudogene Approved 16p11.2 16p11.2 MGC3020 "C16orf67|KIAA0664P3|KIAA0664L3" "chromosome 16 open reading frame 67|KIAA0664 pseudogene 3|KIAA0664-like 3|clustered mitochondria (cluA/CLU1) homolog pseudogene 3" 2006-04-04 2012-11-30 2016-06-27 2016-06-27 100132341 ENSG00000131797 OTTHUMG00000132462 AK054698 NR_024034 Q96NS8 12477932 PGOHUM00000293785 +HGNC:38470 CLUHP4 clustered mitochondria homolog pseudogene 4 pseudogene pseudogene Approved 4q35.2 04q35.2 KIAA0664L4 KIAA0664-like 4 KIAA0664P4 "KIAA0664 pseudogene 4|clustered mitochondria (cluA/CLU1) homolog pseudogene 4" 2010-05-05 2012-11-30 2016-06-27 2016-06-27 100418711 ENSG00000249003 OTTHUMG00000161343 NG_022045 PGOHUM00000300101 +HGNC:38471 CLUHP5 clustered mitochondria homolog pseudogene 5 pseudogene pseudogene Approved 10q26.3 10q26.3 KIAA0664L5 KIAA0664-like 5 KIAA0664P5 "KIAA0664 pseudogene 5|clustered mitochondria (cluA/CLU1) homolog pseudogene 5" 2010-05-05 2012-11-30 2016-06-27 2016-06-27 100418745 ENSG00000230468 OTTHUMG00000019331 NG_022159 PGOHUM00000290027 +HGNC:51571 CLUHP6 clustered mitochondria homolog pseudogene 6 pseudogene pseudogene Approved 18q12.1 18q12.1 clustered mitochondria (cluA/CLU1) homolog pseudogene 6 2015-03-10 2016-06-27 2016-06-27 100418754 ENSG00000265279 OTTHUMG00000179734 NG_026287 PGOHUM00000294646 +HGNC:51570 CLUHP7 clustered mitochondria homolog pseudogene 7 pseudogene pseudogene Approved 7q11.21 07q11.21 clustered mitochondria (cluA/CLU1) homolog pseudogene 7 2015-03-10 2016-06-27 2016-06-27 100418719 NG_026587 PGOHUM00000302756 +HGNC:51573 CLUHP8 clustered mitochondria homolog pseudogene 8 pseudogene pseudogene Approved 12q12 12q12 clustered mitochondria (cluA/CLU1) homolog pseudogene 8 2015-03-10 2016-06-27 2016-06-27 100418733 ENSG00000258278 OTTHUMG00000169297 NG_024078 PGOHUM00000291623 +HGNC:51572 CLUHP9 clustered mitochondria homolog pseudogene 9 pseudogene pseudogene Approved 13q12.12 13q12.12 clustered mitochondria (cluA/CLU1) homolog pseudogene 9 2015-03-10 2016-06-27 2016-06-27 100418742 NG_024901 PGOHUM00000292103 +HGNC:51574 CLUHP10 clustered mitochondria homolog pseudogene 10 pseudogene pseudogene Approved 3p12.3 03p12.3 clustered mitochondria (cluA/CLU1) homolog pseudogene 10 2015-03-10 2016-06-27 2016-06-27 107161230 ENSG00000282511 OTTHUMG00000191433 NG_046708 +HGNC:51806 CLUHP11 clustered mitochondria homolog pseudogene 11 pseudogene pseudogene Approved 16p11.2 16p11.2 clustered mitochondria (cluA/CLU1) homolog pseudogene 11 2015-06-09 2015-06-09 2016-06-27 2016-06-27 100418756 ENSG00000278138 OTTHUMG00000187977 NG_026413 PGOHUM00000293827 +HGNC:2096 CLUL1 clusterin like 1 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 retinal clusterin-like protein clusterin-like 1 (retinal) 2000-05-30 2015-12-01 2015-12-01 27098 ENSG00000079101 OTTHUMG00000178252 uc002kkp.4 D63813 XM_017025707 "CCDS42405|CCDS74187" Q15846 "10675623|14507903" RGD:1306852 CLUL1 616990 +HGNC:23139 CLVS1 clavesin 1 protein-coding gene gene with protein product Approved 8q12.2-q12.3 08q12.2-q12.3 "MGC34646|CRALBPL|C6orf212L" RLBP1L1 retinaldehyde binding protein 1-like 1 2007-07-18 2009-10-14 2009-10-14 2016-10-11 157807 ENSG00000177182 OTTHUMG00000164334 uc003xuh.4 AY094971 NM_173519 CCDS6176 Q8IUQ0 "16802092|19651769" MGI:1921688 RGD:1564200 CLVS1 611292 +HGNC:23046 CLVS2 clavesin 2 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 bA160A10.4 "C6orf212|C6orf213|RLBP1L2" "chromosome 6 open reading frame 212|chromosome 6 open reading frame 213|retinaldehyde binding protein 1-like 2" 2003-11-26 2009-10-14 2009-10-14 2015-09-11 134829 ENSG00000146352 OTTHUMG00000015495 uc003pzi.3 AK095527 NM_001010852 CCDS34525 Q5SYC1 19651769 MGI:2443223 RGD:1306801 CLVS2 616945 +HGNC:18355 CLYBL citrate lyase beta like protein-coding gene gene with protein product Approved 13q32.3 13q32.3 CLB 2002-03-17 2014-11-19 171425 ENSG00000125246 OTTHUMG00000017278 uc058xzt.1 AF428253 XR_001749485 CCDS32002 Q8N0X4 MGI:1916884 RGD:1304615 CLYBL 609686 +HGNC:39893 CLYBL-AS1 CLYBL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 CLYBL antisense RNA 1 (non-protein coding) 2011-04-08 2012-08-15 2014-11-19 101927465 ENSG00000234303 OTTHUMG00000017276 uc058xzv.1 NR_046525 +HGNC:39894 CLYBL-AS2 CLYBL antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 CLYBL antisense RNA 2 (non-protein coding) 2011-04-08 2012-08-15 2014-11-18 100874063 ENSG00000227659 OTTHUMG00000017275 uc032anj.2 NR_046526 +HGNC:39892 CLYBL-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:2097 CMA1 chymase 1 protein-coding gene gene with protein product Approved 14q12 14q12 chymase 1, mast cell 1991-06-04 2016-02-26 2016-02-26 1215 ENSG00000092009 OTTHUMG00000140181 uc001wpp.2 NM_001836 "CCDS9630|CCDS76666" P23946 8468056 MGI:96941 RGD:2365 CMA1 118938 S01.140 objectId:2340 3.4.21.39 +HGNC:2098 CMAHP cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 CMAH cytidine monophosphate-N-acetylneuraminic acid hydroxylase (CMP-N-acetylneuraminate monooxygenase)(pseudogene) 1998-12-22 2011-04-28 2011-04-28 2016-10-05 8418 ENSG00000168405 OTTHUMG00000016099 NR_002174 Q9Y471 "7608218|9624188" MGI:103227 RGD:1311930 CMAHP 603209 +HGNC:18290 CMAS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "CMP-Neu5Ac synthetase|N-acylneuraminate cytidylyltransferase" 2002-06-11 2015-12-04 55907 ENSG00000111726 OTTHUMG00000169097 uc001rfm.5 AF271388 NM_018686 CCDS8696 Q8NFW8 9689047 MGI:1337124 RGD:1310911 CMAS 603316 2.7.7.43 +HGNC:25090 CMBL carboxymethylenebutenolidase homolog protein-coding gene gene with protein product Approved 5p15.2 05p15.2 FLJ23617 "carboxymethylenebutenolidase-like (Pseudomonas)|carboxymethylenebutenolidase homolog (Pseudomonas)" 2006-08-18 2016-06-23 2016-06-23 134147 ENSG00000164237 OTTHUMG00000131043 uc003jes.4 NM_138809 CCDS3878 Q96DG6 "3804974|20177059" MGI:1916824 RGD:1306952 CMBL 613379 3.1.-.- +HGNC:28783 CMC1 C-X9-C motif containing 1 protein-coding gene gene with protein product Approved 3p24.1 03p24.1 MGC61571 C3orf68 "chromosome 3 open reading frame 68|COX assembly mitochondrial protein 1 homolog (S. cerevisiae)|C-x(9)-C motif containing 1" 2007-12-20 2008-06-20 2016-06-07 2016-06-07 152100 ENSG00000187118 OTTHUMG00000155660 uc003cea.4 BC052644 NM_182523 CCDS33722 Q7Z7K0 18443040 MGI:1915149 RGD:1305283 CMC1 615166 +HGNC:24447 CMC2 C-X9-C motif containing 2 protein-coding gene gene with protein product Approved 16q23.2 16q23.2 "DC13|MGC45036" C16orf61 "chromosome 16 open reading frame 61|COX assembly mitochondrial protein 2 homolog (S. cerevisiae)|C-x(9)-C motif containing 2" 2006-02-20 2012-02-14 2016-06-07 2016-06-07 56942 ENSG00000103121 OTTHUMG00000137625 uc059xnh.1 BC032631 NM_020188 CCDS10930 Q9NRP2 20220131 MGI:1913781 RGD:2324599 +HGNC:35428 CMC4 C-X9-C motif containing 4 protein-coding gene gene with protein product Approved Xq28 Xq28 "P8MTCP1|p8" mature T-cell proliferation 1, isoform p8 "MTCP1|MTCP1NB" "mature T-cell proliferation 1 neighbor|C-x(9)-C motif containing 4 homolog (S. cerevisiae)|C-x(9)-C motif containing 4" 2008-12-12 2012-10-15 2016-06-07 2016-06-07 100272147 ENSG00000182712 OTTHUMG00000158504 uc004fmy.4 NM_001018024.2 CCDS14764 P56277 "8361760|9405159|20922212" MGI:5637812 RGD:7647017 +HGNC:2102 CMD1B cardiomyopathy, dilated 1B (autosomal dominant) phenotype phenotype only Approved 9q13-q22 09q13-q22 FDC 1995-12-20 2003-03-25 1218 7573045 600884 +HGNC:2106 CMD1F cardiomyopathy, dilated 1F (autosomal dominant) phenotype phenotype only Approved 6q23 06q23 "CDCD3|LGMD1E" 1998-04-22 2007-04-23 1222 9382102 +HGNC:2108 CMD1H cardiomyopathy, dilated 1H (autosomal dominant) phenotype phenotype only Approved 2q14-q22 02q14-q22 1999-07-01 1999-09-16 23459 604288 +HGNC:14541 CMD1K cardiomyopathy, dilated 1K (autosomal dominant) phenotype phenotype only Approved 6q12-q16 06q12-q16 2001-01-31 2001-01-31 65014 11085912 605582 +HGNC:32552 CMD1Q cardiomyopathy, dilated 1Q (autosomal dominant) phenotype phenotype only Approved 7q22.3-q31.1 07q22.3-q31.1 2006-03-17 2008-05-15 664728 16228230 609915 +HGNC:24319 CMIP c-Maf inducing protein protein-coding gene gene with protein product Approved 16q23.2-q23.3 16q23.2-q23.3 2011-08-04 2016-10-11 80790 ENSG00000153815 OTTHUMG00000176520 uc002fgp.5 AB051481 NM_030629 "CCDS54044|CCDS54045" Q8IY22 "11214970|12939343" MGI:1921690 RGD:1306101 CMIP 610112 +HGNC:2121 CMKLR1 chemerin chemokine-like receptor 1 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 RVER1 "resolvin E1 receptor|chemerin receptor" chemokine-like receptor 1 Chemerin receptor 218 1995-11-22 2015-04-08 2015-04-08 1240 ENSG00000174600 OTTHUMG00000169576 uc001tmv.4 U79526 XM_017018820 "CCDS41829|CCDS44965" Q99788 MGI:109603 RGD:69359 CMKLR1 602351 objectId:79 +HGNC:2124 CMM cutaneous malignant melanoma/dysplastic nevus phenotype phenotype only Approved 1p36 01p36 CMM1 DNS 2001-06-22 2012-10-02 1243 1531137 155600 +HGNC:18170 CMPK1 cytidine/uridine monophosphate kinase 1 protein-coding gene gene with protein product Approved 1p33 01p33 UMP-CMPK "UMP-CMP kinase|Cytidine monophosphate kinase|UMP/CMP kinase" CMPK "cytidylate kinase|cytidine monophosphate (UMP-CMP) kinase 1, cytosolic" 2005-05-10 2008-01-25 2016-01-18 2016-10-05 51727 ENSG00000162368 OTTHUMG00000007849 uc001cri.3 AF070416 NM_016308 "CCDS549|CCDS44135" P30085 10462544 MGI:1913838 RGD:1310116 CMPK1 191710 2.7.4.14 +HGNC:27015 CMPK2 cytidine/uridine monophosphate kinase 2 protein-coding gene gene with protein product Approved 2p25.2 02p25.2 "TYKi|UMP-CMPK2|NDK" "cytidylate kinase 2|UMP/CMP kinase|nucleoside-diphosphate kinase" cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial 2008-01-25 2016-01-18 2016-01-18 129607 ENSG00000134326 OTTHUMG00000151629 uc002qyo.5 NM_207315 "CCDS42648|CCDS58695|CCDS58696" Q5EBM0 17999954 MGI:99830 RGD:1305881 CMPK2 611787 "2.7.4.14|2.7.4.6" +HGNC:2126 CMR1A cardiomyopathy, restrictive 1A (autosomal dominant) phenotype phenotype only Approved reserved reserved 1995-12-20 2011-02-10 1245 +HGNC:2127 CMR2A cardiomyopathy, restrictive 2A (autosomal recessive) phenotype phenotype only Approved reserved reserved 1995-12-20 2011-02-10 1246 +HGNC:2128 CMR3A cardiomyopathy, restrictive 3A (X-linked) phenotype phenotype only Approved X X 1995-12-20 2014-11-14 1247 +HGNC:28666 CMSS1 cms1 ribosomal small subunit homolog (yeast) protein-coding gene gene with protein product Approved 3q12.1 03q12.1 MGC4308 C3orf26 chromosome 3 open reading frame 26 2005-12-19 2012-09-20 2012-09-20 2014-11-18 84319 ENSG00000184220 OTTHUMG00000159054 uc003dtl.4 NM_032359 "CCDS2935|CCDS54618" Q9BQ75 12477932 MGI:1913747 RGD:1309437 +HGNC:2129 CMT1A Charcot-Marie-Tooth neuropathy 1A (greatly reduced nerve conduction velocity, hereditary motor sensory neuropathy Ia) phenotype phenotype only Approved 17p13.1-q12 17p13.1-q12 HMSNIA 1989-06-30 2011-02-15 "1677316|8644705|10489052|7515304" +HGNC:2132 CMT2B Charcot-Marie-Tooth neuropathy 2B phenotype phenotype only Approved 3q13-q22 03q13-q22 1995-08-10 2011-02-17 +HGNC:19172 CMTM1 CKLF like MARVEL transmembrane domain containing 1 protein-coding gene gene with protein product Approved 16q21 16q21 "CKLFH1a|CKLFH" CKLFSF1 "chemokine-like factor super family 1|chemokine-like factor superfamily 1|CKLF-like MARVEL transmembrane domain containing 1" CKLF like MARVEL transmembrane domain containing 978 2002-09-10 2005-11-08 2016-01-26 2016-10-05 113540 ENSG00000089505 OTTHUMG00000137502 uc002epr.5 AF278577 NM_052999 "CCDS10810|CCDS10811|CCDS10812|CCDS45503|CCDS45504|CCDS54019|CCDS54020|CCDS54021" Q8IZ96 12782130 MGI:2447159 RGD:1560130 CMTM1 607884 +HGNC:19173 CMTM2 CKLF like MARVEL transmembrane domain containing 2 protein-coding gene gene with protein product Approved 16q21 16q21 "MGC39436|FLJ25732" CKLFSF2 "chemokine-like factor super family 2|chemokine-like factor superfamily 2|CKLF-like MARVEL transmembrane domain containing 2" CKLF like MARVEL transmembrane domain containing 978 2002-09-10 2005-11-08 2016-01-26 2016-10-05 146225 ENSG00000140932 OTTHUMG00000137501 uc002ept.4 BC025354 NM_001199317 "CCDS10814|CCDS56001" Q8TAZ6 "MGI:2447160|MGI:2447311" RGD:1307501 CMTM2 607885 +HGNC:19174 CMTM3 CKLF like MARVEL transmembrane domain containing 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ31762|BNAS2" CKLFSF3 "chemokine-like factor superfamily 3|CKLF-like MARVEL transmembrane domain containing 3" CKLF like MARVEL transmembrane domain containing 978 2002-09-10 2005-11-08 2016-01-26 2016-10-05 123920 ENSG00000140931 OTTHUMG00000137503 uc002epu.5 AK056324 NM_144601 CCDS10815 Q96MX0 15087455 MGI:2447162 RGD:1308763 CMTM3 607886 +HGNC:19175 CMTM4 CKLF like MARVEL transmembrane domain containing 4 protein-coding gene gene with protein product Approved 16q22.1-q22.3 16q22.1-q22.3 CKLFSF4 "chemokine-like factor super family 4|chemokine-like factor superfamily 4|CKLF-like MARVEL transmembrane domain containing 4" CKLF like MARVEL transmembrane domain containing 978 2002-09-10 2005-11-08 2016-01-26 2016-01-26 146223 ENSG00000183723 OTTHUMG00000137500 uc002eqa.4 AF479814 XR_933209 "CCDS10817|CCDS42170" Q8IZR5 12782130 MGI:2142888 RGD:1565098 CMTM4 607887 +HGNC:19176 CMTM5 CKLF like MARVEL transmembrane domain containing 5 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ37521 CKLFSF5 "chemokine-like factor super family 5|chemokine-like factor superfamily 5|CKLF-like MARVEL transmembrane domain containing 5" CKLF like MARVEL transmembrane domain containing 978 2002-09-10 2005-11-08 2016-01-26 2016-01-26 116173 ENSG00000166091 OTTHUMG00000028751 uc001wjs.3 BC013109 XM_017020953 "CCDS9598|CCDS32050|CCDS73617|CCDS73618|CCDS73619" Q96DZ9 MGI:2447164 RGD:1307045 CMTM5 607888 +HGNC:19177 CMTM6 CKLF like MARVEL transmembrane domain containing 6 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 FLJ20396 CKLFSF6 "chemokine-like factor super family 6|chemokine-like factor superfamily 6|CKLF-like MARVEL transmembrane domain containing 6" CKLF like MARVEL transmembrane domain containing 978 2002-09-10 2005-11-08 2016-01-26 2016-10-05 54918 ENSG00000091317 OTTHUMG00000130747 uc003cfa.2 AK000403 NM_017801 CCDS2653 Q9NX76 MGI:2447165 RGD:1307765 CMTM6 607889 +HGNC:19178 CMTM7 CKLF like MARVEL transmembrane domain containing 7 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 FLJ30992 CKLFSF7 "chemokine-like factor super family 7|chemokine-like factor superfamily 7|CKLF-like MARVEL transmembrane domain containing 7" CKLF like MARVEL transmembrane domain containing 978 2002-09-10 2005-11-08 2016-01-26 2016-01-26 112616 ENSG00000153551 OTTHUMG00000155869 uc003cey.2 AF479263 XM_011533319 "CCDS33730|CCDS33731" Q96FZ5 MGI:2447166 RGD:1591926 CMTM7 607890 +HGNC:19179 CMTM8 CKLF like MARVEL transmembrane domain containing 8 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 CKLFSF8 "chemokine-like factor super family 8|chemokine-like factor superfamily 8|CKLF-like MARVEL transmembrane domain containing 8" CKLF like MARVEL transmembrane domain containing 978 2002-09-10 2005-11-08 2016-01-26 2016-10-05 152189 ENSG00000170293 OTTHUMG00000130753 uc003cex.4 AF474370 NM_178868 "CCDS2652|CCDS82753" Q8IZV2 MGI:2447167 RGD:735040 CMTM8 607891 +HGNC:21077 CMTR1 cap methyltransferase 1 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "MTr1|ISG95" "KIAA0082|FTSJD2" "KIAA0082|FtsJ methyltransferase domain containing 2" G-patch domain containing 579 2003-11-21 2013-07-23 2013-07-23 2015-08-24 23070 ENSG00000137200 OTTHUMG00000014624 BC031890 NM_015050 CCDS4835 Q8N1G2 20713356 MGI:1921407 RGD:1307801 616189 2.1.1.57 +HGNC:25635 CMTR2 cap methyltransferase 2 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 "FLJ11171|AFT|MTr2" adrift homolog (Drosophila) FTSJD1 FtsJ methyltransferase domain containing 1 2008-07-25 2013-07-23 2013-07-23 2014-11-19 55783 ENSG00000180917 OTTHUMG00000137587 BC035005 NM_018348 CCDS10898 Q8IYT2 21310715 MGI:2384580 RGD:1309394 616190 +HGNC:2137 CMTX2 Charcot-Marie-Tooth neuropathy, X-linked 2 (recessive) phenotype phenotype only Approved Xp22 Xp22 1991-09-12 1991-12-06 1253 302801 +HGNC:2138 CMTX3 Charcot-Marie-Tooth neuropathy, X-linked 3 (dominant) phenotype phenotype only Approved X X 1991-09-12 2000-05-19 1254 2245309 302802 +HGNC:14305 CMYA5 cardiomyopathy associated 5 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "myospryn|SPRYD2|DKFZp451G223|TRIM76" "genethonin-3|tripartite motif-containing 76" C5orf10 chromosome 5 open reading frame 10 "Tripartite motif containing|A-kinase anchoring proteins|Fibronectin type III domain containing" "59|396|555" 2002-03-25 2013-02-11 202333 ENSG00000164309 OTTHUMG00000162548 uc003kgc.4 "AW755254|AL831986" NM_153610 CCDS47238 Q8N3K9 14688250 MGI:1923719 RGD:1582992 CMYA5 612193 +HGNC:2139 CNA1 cornea plana 1 (autosomal dominant) phenotype phenotype only Approved 12q 12q 1993-12-15 2008-05-14 1255 121400 +HGNC:26663 CNBD1 cyclic nucleotide binding domain containing 1 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 FLJ35802 2005-07-27 2015-08-24 168975 ENSG00000176571 OTTHUMG00000163743 uc003ydy.3 AK093121 NM_173538 CCDS55259 Q8NA66 MGI:3650508 RGD:1592300 CNBD1 +HGNC:16145 CNBD2 cyclic nucleotide binding domain containing 2 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 dJ954P9.1 "C20orf152|CNMPD1" "chromosome 20 open reading frame 152|cyclic nucleotide (cNMP) binding domain containing 1" 2001-07-17 2012-11-15 2012-11-15 2012-11-15 140894 ENSG00000149646 OTTHUMG00000032371 uc002xer.1 AL359828 NM_080834 "CCDS13270|CCDS56189|CCDS77575" Q96M20 11780052 MGI:1918123 RGD:1311678 +HGNC:13164 CNBP CCHC-type zinc finger nucleic acid binding protein protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "RNF163|ZCCHC22|CNBP1" "DM2|ZNF9" "zinc finger protein 9 (a cellular retroviral nucleic acid binding protein)|zinc finger protein 9|CCHC-type zinc finger, nucleic acid binding protein" "Ring finger proteins|Zinc fingers CCHC-type" "58|74" 1989-12-11 2006-06-29 2016-04-04 2016-10-05 7555 ENSG00000169714 OTTHUMG00000159943 uc003elq.5 U19765 NM_003418 "CCDS3056|CCDS46906|CCDS46907|CCDS46908|CCDS54637" P62633 "2249857|11486088" MGI:88431 RGD:621807 CNBP 116955 120657 +HGNC:2141 CNC2 Carney complex type 2, multiple neoplasia and lentiginosis phenotype phenotype only Approved 2p16 02p16 CNC Carney complex, multiple neoplasia and lentiginosis 1996-06-07 2014-02-07 2014-02-07 2014-02-07 1257 8609225 605244 +HGNC:20675 CNDP1 carnosine dipeptidase 1 protein-coding gene gene with protein product Approved 18q22.3 18q22.3 "MGC10825|CN1|CPGL2|HsT2308" "carnosinase 1|glutamate carboxypeptidase-like protein 2|beta-Ala-His dipeptidase" carnosine dipeptidase 1 (metallopeptidase M20 family) 2004-04-14 2016-05-20 2016-05-20 84735 ENSG00000150656 OTTHUMG00000132852 uc002llq.5 NM_032649 CCDS12007 Q96KN2 12473676 MGI:2451097 RGD:1359493 CNDP1 609064 M20.006 objectId:1603 3.4.13.20 +HGNC:24437 CNDP2 CNDP dipeptidase 2 (metallopeptidase M20 family) protein-coding gene gene with protein product Approved 18q22.3 18q22.3 "FLJ10830|CN2|HsT2298|CPGL" "cytosolic nonspecific dipeptidase|carnosine dipeptidase II" PEPA peptidase A 2004-04-14 2004-07-12 2016-04-06 55748 ENSG00000133313 OTTHUMG00000132853 uc002llm.3 AK001692 NM_018235 "CCDS12006|CCDS54190" Q96KP4 12473676 MGI:1913304 RGD:1305827 CNDP2 169800 M20.005 objectId:1604 3.4.13.18 +HGNC:26759 CNEP1R1 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "FLJ38101|NEP1-R1" nuclear envelope phosphatase 1-regulatory subunit 1 "C16orf69|TMEM188" "chromosome 16 open reading frame 69|transmembrane protein 188" 2006-04-07 2012-02-01 2012-02-01 2014-11-18 255919 ENSG00000205423 uc002efu.5 AK095420 NM_153261 "CCDS45480|CCDS61931" Q8N9A8 22134922 MGI:1921981 RGD:1308816 616869 +HGNC:30183 CNFN cornifelin protein-coding gene gene with protein product Approved 19q13.2 19q13.2 PLAC8L2 2004-07-23 2016-10-05 84518 ENSG00000105427 OTTHUMG00000182813 uc002otp.5 AB049591 NM_032488 CCDS12606 Q9BYD5 MGI:1919633 RGD:1563577 CNFN 611764 +HGNC:2148 CNGA1 cyclic nucleotide gated channel alpha 1 protein-coding gene gene with protein product Approved 4p12 04p12 "RCNC1|RCNCa|CNG1|RP49" "CNCG1|CNCG" Cyclic nucleotide gated channels 250 2001-06-22 2015-09-11 1259 ENSG00000198515 OTTHUMG00000160668 uc062wkc.1 M84741 NM_000087 "CCDS43226|CCDS47050" P29973 "7683629|16382102" MGI:88436 RGD:621815 Mutations of the Cyclic Nucleotide-gated Cation Channel|http://www.retina-international.org/files/sci-news/cnga1mut.htm CNGA1 123825 120664 objectId:394 +HGNC:2149 CNGA2 cyclic nucleotide gated channel alpha 2 protein-coding gene gene with protein product Approved Xq28 Xq28 "CNG2|OCNC1|OCNCa|OCNCALPHA|OCNCalpha|FLJ46312" "CNCA1|CNCA" Cyclic nucleotide gated channels 250 1991-06-05 2016-10-05 1260 ENSG00000183862 OTTHUMG00000024173 uc065bqd.1 S76067 NM_005140 CCDS14701 Q16280 "7532814|16382102" MGI:108040 RGD:2367 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CNGA2 CNGA2 300338 441279 objectId:395 +HGNC:2150 CNGA3 cyclic nucleotide gated channel alpha 3 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "CCNC1|CCNCa|CNG3" "CNCG3|ACHM2" Cyclic nucleotide gated channels 250 1994-12-20 2015-09-11 1261 ENSG00000144191 OTTHUMG00000130561 uc002syt.4 S76069 NM_001298 "CCDS2034|CCDS42719" Q16281 "7532814|9517456|16382102" MGI:1341818 RGD:70948 Mutations of the Cone Cyclic Nucleotide-gated Cation Channel|http://www.retina-international.org/files/sci-news/cnga3mut.htm CNGA3 600053 120671 objectId:396 +HGNC:2152 CNGA4 cyclic nucleotide gated channel alpha 4 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "OCNC2|OCNCb|CNG5" "CNCA2|CNGB2" cyclic nucleotide gated channel beta 2 Cyclic nucleotide gated channels 250 1994-12-20 2002-01-18 2014-11-19 1262 ENSG00000132259 OTTHUMG00000165379 uc001mco.4 AK122736 NM_001037329 CCDS31408 Q8IV77 "11764791|16382102" MGI:2664099 RGD:619844 CNGA4 609472 objectId:397 +HGNC:2151 CNGB1 cyclic nucleotide gated channel beta 1 protein-coding gene gene with protein product Approved 16q21 16q21 "RCNC2|RCNCb|GARP|GAR1|CNGB1B|RP45" glutamic acid-rich protein "CNCG2|CNCG3L" Cyclic nucleotide gated channels 250 1994-12-20 2016-10-05 1258 ENSG00000070729 OTTHUMG00000154810 uc002emt.3 AF042498 NM_001297 "CCDS42169|CCDS45495|CCDS67042" Q14028 "8766832|7590744|16382102" MGI:2664102 RGD:621809 CNGB1 600724 159434 objectId:398 +HGNC:2153 CNGB3 cyclic nucleotide gated channel beta 3 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "ACHM3|ACHM1|RMCH" "achromatopsia (rod monochromacy) 3|achromatopsia (rod monochromacy) 1" Cyclic nucleotide gated channels 250 2000-07-12 2003-06-25 2015-09-11 54714 ENSG00000170289 OTTHUMG00000163738 uc003ydx.3 AF228520 NM_019098 CCDS6244 Q9NQW8 "10888875|10958649|16382102" MGI:1353562 RGD:1565364 CNGB3 605080 120678 objectId:399 +HGNC:19431 CNIH1 cornichon family AMPA receptor auxiliary protein 1 protein-coding gene gene with protein product Approved 14q22.2 14q22.2 "TGAM77|CNIL" CNIH cornichon homolog (Drosophila) 2002-11-28 2013-08-28 2013-08-28 2016-10-05 10175 ENSG00000100528 OTTHUMG00000152335 AF031379 NM_005776 CCDS9717 O95406 10209299 MGI:1277202 RGD:1312030 611287 +HGNC:28744 CNIH2 cornichon family AMPA receptor auxiliary protein 2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "MGC50896|Cnil|CNIH-2" cornichon homolog 2 (Drosophila) 2004-11-15 2013-08-28 2015-09-11 254263 ENSG00000174871 OTTHUMG00000166919 uc001ohi.3 BC047953 NM_182553 CCDS8131 Q6PI25 24853943 MGI:1277225 RGD:1304930 CNIH2 611288 +HGNC:26802 CNIH3 cornichon family AMPA receptor auxiliary protein 3 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 "FLJ38993|CNIH-3" cornichon homolog 3 (Drosophila) 2004-11-15 2013-08-28 2015-09-11 149111 ENSG00000143786 OTTHUMG00000037634 uc001hos.2 AF070524 NM_152495 CCDS1544 Q8TBE1 "8619474|9110174" MGI:1920228 RGD:1582859 CNIH3 +HGNC:25013 CNIH4 cornichon family AMPA receptor auxiliary protein 4 protein-coding gene gene with protein product Approved 1q42.11 01q42.11 HSPC163 cornichon homolog 4 (Drosophila) 2005-06-23 2013-08-28 2016-10-05 29097 ENSG00000143771 OTTHUMG00000037635 uc001hom.3 NM_014184 "CCDS1543|CCDS60429|CCDS60430" Q9P003 11042152 MGI:1925828 RGD:1559740 CNIH4 +HGNC:19700 CNKSR1 connector enhancer of kinase suppressor of Ras 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "CNK1|KSR|CNK" "Pleckstrin homology domain containing|Sterile alpha motif domain containing|PDZ domain containing" "682|760|1220" 2004-05-27 2016-10-05 10256 ENSG00000142675 OTTHUMG00000007541 uc001blm.5 AF100153 NM_006314 "CCDS276|CCDS72732|CCDS76124" Q969H4 9814705 MGI:2670958 RGD:1311879 CNKSR1 603272 +HGNC:19701 CNKSR2 connector enhancer of kinase suppressor of Ras 2 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 "KIAA0902|CNK2|KSR2" "Pleckstrin homology domain containing|Sterile alpha motif domain containing|PDZ domain containing" "682|760|1220" 2004-05-27 2015-09-11 22866 ENSG00000149970 OTTHUMG00000021233 uc011mjo.3 AB020709 NM_014927 "CCDS14198|CCDS55387|CCDS55388|CCDS55389" Q8WXI2 MGI:2661175 RGD:708454 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CNKSR2 CNKSR2 300724 449961 +HGNC:23034 CNKSR3 CNKSR family member 3 protein-coding gene gene with protein product Approved 6q25.2 06q25.2 FLJ31349 MAGI1 membrane associated guanylate kinase interacting protein-like 1 "Sterile alpha motif domain containing|PDZ domain containing" "760|1220" 2003-11-26 2005-04-11 2005-04-11 2015-09-11 154043 ENSG00000153721 OTTHUMG00000015873 uc021zhc.2 AK055911 NM_173515 CCDS5246 Q6P9H4 MGI:2674130 RGD:1307544 CNKSR3 +HGNC:2155 CNN1 calponin 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "SMCC|Sm-Calp" calponin 1, basic, smooth muscle 1996-08-16 2016-01-19 2016-01-19 1264 ENSG00000130176 OTTHUMG00000182033 uc002msc.2 U37019 NM_001299 "CCDS12263|CCDS77238" P51911 "8526917|9332369" MGI:104979 RGD:621883 CNN1 600806 +HGNC:2156 CNN2 calponin 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 1996-08-16 2014-11-19 1265 ENSG00000064666 OTTHUMG00000172729 uc002lqu.4 D83735 NM_004368 "CCDS12053|CCDS12054|CCDS77204|CCDS77205" Q99439 8889829 MGI:105093 RGD:1589807 CNN2 602373 +HGNC:39526 CNN2P1 calponin 2 pseudogene 1 pseudogene pseudogene Approved 22q12.2 22q12.2 2011-02-18 2011-02-18 646467 ENSG00000227201 OTTHUMG00000151269 NG_022869 PGOHUM00000246304 +HGNC:39527 CNN2P2 calponin 2 pseudogene 2 pseudogene pseudogene Approved 9p11.2 09p11.2 2011-02-18 2016-10-05 642888 ENSG00000227069 OTTHUMG00000067498 NG_021614 PGOHUM00000236077 +HGNC:39528 CNN2P3 calponin 2 pseudogene 3 pseudogene pseudogene Approved 9q13 09q13 2011-02-18 2016-10-05 392343 ENSG00000235832 OTTHUMG00000013328 NG_021622 PGOHUM00000236180 +HGNC:39529 CNN2P4 calponin 2 pseudogene 4 pseudogene pseudogene Approved 9p11.1 09p11.1 CNN2P5 calponin 2 pseudogene 5 2011-02-18 2014-11-18 647507 ENSG00000213816 OTTHUMG00000066793 NG_021653 PGOHUM00000236524 +HGNC:39531 CNN2P6 calponin 2 pseudogene 6 pseudogene pseudogene Approved 3p23 03p23 2011-02-18 2011-02-18 339897 ENSG00000213854 OTTHUMG00000155812 NG_022198 PGOHUM00000237568 +HGNC:39532 CNN2P7 calponin 2 pseudogene 7 pseudogene pseudogene Approved 21q11.2 21q11.2 2011-02-18 2013-09-05 391266 ENSG00000215562 OTTHUMG00000074231 NG_021996 PGOHUM00000239136 +HGNC:39533 CNN2P8 calponin 2 pseudogene 8 pseudogene pseudogene Approved 2q11.1 02q11.1 2011-02-18 2011-02-18 205272 ENSG00000213355 OTTHUMG00000155130 NG_021570 PGOHUM00000240777 +HGNC:39534 CNN2P9 calponin 2 pseudogene 9 pseudogene pseudogene Approved 6q21 06q21 2011-02-18 2011-02-18 441166 ENSG00000213149 OTTHUMG00000016267 NG_022902 PGOHUM00000243738 +HGNC:39535 CNN2P10 calponin 2 pseudogene 10 pseudogene pseudogene Approved 1q24.1 01q24.1 2011-02-18 2011-02-18 646693 ENSG00000232223 OTTHUMG00000034318 NG_022816 PGOHUM00000245068 +HGNC:39536 CNN2P11 calponin 2 pseudogene 11 pseudogene pseudogene Approved 2q11.1 02q11.1 2011-02-18 2012-03-02 100689296 ENSG00000237383 OTTHUMG00000155140 NG_029997 PGOHUM00000240182 +HGNC:39834 CNN2P12 calponin 2 pseudogene 12 pseudogene pseudogene Approved 13q11 13q11 2011-03-30 2012-10-16 100131550 ENSG00000204718 OTTHUMG00000016462 NG_021966 PGOHUM00000262204 +HGNC:2157 CNN3 calponin 3 protein-coding gene gene with protein product Approved 1p21.3 01p21.3 calponin 3, acidic 1996-08-16 2016-01-19 2016-10-05 1266 ENSG00000117519 OTTHUMG00000010783 uc001dqz.6 BC025372 NM_001839 "CCDS30775|CCDS65592|CCDS65593" Q15417 8526917 MGI:1919244 RGD:71044 CNN3 602374 +HGNC:38666 CNN3P1 calponin 3 pseudogene 1 pseudogene pseudogene Approved 6p25.1 06p25.1 calponin 3, acidic pseudogene 1 2010-07-08 2016-01-19 2016-01-19 643875 ENSG00000218868 OTTHUMG00000014189 NG_022343 PGOHUM00000243479 +HGNC:102 CNNM1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 ACDP1 cyclin M1 1999-12-07 2014-08-07 2015-08-28 26507 ENSG00000119946 OTTHUMG00000018881 uc001kpp.6 AF169226 NM_020348 CCDS7478 Q9NRU3 21393841 MGI:1891366 RGD:1308728 CNNM1 607802 +HGNC:103 CNNM2 cyclin and CBS domain divalent metal cation transport mediator 2 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 ACDP2 cyclin M2 1999-12-07 2014-08-07 2015-08-28 54805 ENSG00000148842 OTTHUMG00000018976 uc001kwm.4 AF216962 NM_017649 "CCDS7543|CCDS44474|CCDS44475" Q9H8M5 "21393841|24699222" MGI:2151054 RGD:1308162 CNNM2 607803 311068 +HGNC:104 CNNM3 cyclin and CBS domain divalent metal cation transport mediator 3 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 ACDP3 cyclin M3 1999-12-07 2014-08-07 2014-11-18 26505 ENSG00000168763 OTTHUMG00000130531 uc002swy.4 AF216965 NM_017623 "CCDS2025|CCDS2026" Q8NE01 "21393841|24632616" MGI:2151055 RGD:1307926 CNNM3 607804 +HGNC:105 CNNM4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 KIAA1592 ACDP4 cyclin M4 1999-12-07 2014-08-07 2015-09-11 26504 ENSG00000158158 OTTHUMG00000130532 uc002swx.3 AB046812 NM_020184 CCDS2024 Q6P4Q7 "21393841|24194943" MGI:2151060 RGD:1305571 CNNM4 607805 178795 +HGNC:7877 CNOT1 CCR4-NOT transcription complex subunit 1 protein-coding gene gene with protein product Approved 16q21 16q21 "CDC39|NOT1H|KIAA1007|AD-005" NOT1 CCR4-NOT transcription complex, subunit 1 CCR4-NOT transcription complex 1023 1996-07-19 2015-11-12 2015-11-12 23019 ENSG00000125107 OTTHUMG00000133487 uc002env.5 AL833549 NM_016284 "CCDS10799|CCDS45501|CCDS58468" A5YKK6 14702039 MGI:2442402 RGD:1308009 CNOT1 604917 +HGNC:7878 CNOT2 CCR4-NOT transcription complex subunit 2 protein-coding gene gene with protein product Approved 12q15 12q15 "CDC36|NOT2H" NOT2 CCR4-NOT transcription complex, subunit 2 CCR4-NOT transcription complex 1023 1996-07-19 2015-11-12 2015-11-12 4848 ENSG00000111596 OTTHUMG00000169481 uc001svv.4 AF180473 XM_006719430 CCDS31857 Q9NZN8 10637334 MGI:1919318 RGD:1311672 CNOT2 604909 +HGNC:7879 CNOT3 CCR4-NOT transcription complex subunit 3 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "NOT3H|KIAA0691|LENG2" NOT3 (negative regulator of transcription 3, yeast) homolog NOT3 CCR4-NOT transcription complex, subunit 3 CCR4-NOT transcription complex 1023 1996-07-19 2015-11-12 2016-10-05 4849 ENSG00000088038 OTTHUMG00000066468 uc002qdj.3 AF180474 NM_014516 CCDS12880 O75175 "10637334|9734811" MGI:2385261 RGD:1304771 CNOT3 604910 352239 +HGNC:7880 CNOT4 CCR4-NOT transcription complex subunit 4 protein-coding gene gene with protein product Approved 7q33 07q33 "CLONE243|NOT4H" NOT4 CCR4-NOT transcription complex, subunit 4 "RNA binding motif containing|CCR4-NOT transcription complex" "725|1023" 1996-07-19 2015-11-12 2015-11-12 4850 ENSG00000080802 OTTHUMG00000155568 uc003vss.4 AF180475 NM_013316 "CCDS43650|CCDS47719|CCDS55164|CCDS55165|CCDS55166|CCDS55167" O95628 10637334 MGI:1859026 RGD:1310318 CNOT4 604911 +HGNC:39272 CNOT4P1 CCR4-NOT transcription complex subunit 4 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 CCR4-NOT transcription complex, subunit 4 pseudogene 1 2010-11-24 2015-11-12 2015-11-12 100874389 ENSG00000236704 OTTHUMG00000016522 NG_032240 PGOHUM00000248317 +HGNC:14100 CNOT5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-02-14 +HGNC:14099 CNOT6 CCR4-NOT transcription complex subunit 6 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "CCR4|KIAA1194|Ccr4a" CCR4-NOT transcription complex, subunit 6 CCR4-NOT transcription complex 1023 2001-03-30 2015-11-12 2015-11-12 57472 ENSG00000113300 OTTHUMG00000130935 uc010jld.4 AB033020 NM_015455 CCDS4455 Q9ULM6 11889047 MGI:2144529 RGD:1310783 CNOT6 608951 +HGNC:18042 CNOT6L CCR4-NOT transcription complex subunit 6 like protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "DKFZp434K098|Ccr4b" CCR4-NOT transcription complex, subunit 6-like CCR4-NOT transcription complex 1023 2002-05-23 2016-02-29 2016-10-05 246175 ENSG00000138767 OTTHUMG00000160832 uc011ccd.4 AL133112 XM_011531806 CCDS68731 Q96LI5 MGI:2443154 RGD:1309128 CNOT6L +HGNC:32355 CNOT6LP1 CCR4-NOT transcription complex subunit 6-like pseudogene 1 pseudogene pseudogene Approved 15q21.3 15q21.3 CCR4-NOT transcription complex, subunit 6-like pseudogene 1 2006-01-17 2015-11-12 2015-11-12 729530 ENSG00000230183 OTTHUMG00000172614 AC039057 NG_009481 PGOHUM00000251182 +HGNC:14101 CNOT7 CCR4-NOT transcription complex subunit 7 protein-coding gene gene with protein product Approved 8p22 08p22 BTG1 binding factor 1 CAF1 CCR4-NOT transcription complex, subunit 7 CCR4-NOT transcription complex 1023 2000-12-01 2015-11-12 2016-10-05 29883 ENSG00000198791 OTTHUMG00000096971 uc003wxg.2 L46722 NM_013354 "CCDS6000|CCDS55202" Q9UIV1 "10637334|1538749|17264152" MGI:1298230 RGD:1305313 CNOT7 604913 +HGNC:44248 CNOT7P1 CCR4-NOT transcription complex subunit 7 pseudogene 1 pseudogene pseudogene Approved Xq13.1 Xq13.1 CCR4-NOT transcription complex, subunit 7 pseudogene 1 2012-07-25 2015-11-12 2015-11-12 100421338 ENSG00000233229 OTTHUMG00000021759 NG_026715 PGOHUM00000241370 +HGNC:44249 CNOT7P2 CCR4-NOT transcription complex subunit 7 pseudogene 2 pseudogene pseudogene Approved 1p13.1 01p13.1 CCR4-NOT transcription complex, subunit 7 pseudogene 2 2012-07-25 2015-11-12 2015-11-12 100132332 ENSG00000232185 OTTHUMG00000011973 NG_030209 PGOHUM00000244864 +HGNC:9207 CNOT8 CCR4-NOT transcription complex subunit 8 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 "CAF1|hCAF1|CALIF" PGK promoter directed over production POP2 CCR4-NOT transcription complex, subunit 8 CCR4-NOT transcription complex 1023 1998-09-25 2015-11-12 2016-10-05 9337 ENSG00000155508 OTTHUMG00000130192 uc003lvu.4 AF053318 NM_004779 "CCDS4329|CCDS75361|CCDS78074|CCDS78075" Q9UFF9 "10036195|10637334" MGI:1916375 RGD:1306401 CNOT8 603731 +HGNC:10445 CNOT9 CCR4-NOT transcription complex subunit 9 protein-coding gene gene with protein product Approved 2q35 02q35 "RCD1|RCD1+|CT129|CAF40" cancer/testis antigen 129 RQCD1 "rcd1 (required for cell differentiation, S.pombe) homolog 1|RCD1 required for cell differentiation1 homolog (S. pombe)" CCR4-NOT transcription complex 1023 1999-11-22 2016-04-12 2016-04-12 2016-04-12 9125 ENSG00000144580 OTTHUMG00000154750 uc010zkh.4 D87957 NM_005444 "CCDS33379|CCDS63123|CCDS63122" Q92600 9447985 MGI:1928902 RGD:1311495 612054 +HGNC:23817 CNOT10 CCR4-NOT transcription complex subunit 10 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 "FLJ12890|FLJ13165" CCR4-NOT transcription complex, subunit 10 "Tetratricopeptide repeat domain containing|CCR4-NOT transcription complex" "769|1023" 2003-12-11 2015-11-12 2016-10-05 25904 ENSG00000182973 OTTHUMG00000130748 uc003cfc.2 BC002928 NM_015442 "CCDS2655|CCDS58821|CCDS58822" Q9H9A5 MGI:1926143 RGD:1359219 CNOT10 +HGNC:41031 CNOT10-AS1 CNOT10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.3 03p22.3 CNOT10 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874109 ENSG00000251224 OTTHUMG00000162550 uc062hvr.1 +HGNC:25217 CNOT11 CCR4-NOT transcription complex subunit 11 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 C40 C2orf29 "chromosome 2 open reading frame 29|CCR4-NOT transcription complex, subunit 11" CCR4-NOT transcription complex 1023 2004-05-10 2013-01-24 2015-11-12 2016-10-05 55571 ENSG00000158435 OTTHUMG00000130686 uc002taw.5 AF103798 NM_017546 CCDS2050 Q9UKZ1 "10497265|23232451|23303381" MGI:106580 RGD:1560909 +HGNC:2158 CNP 2',3'-cyclic nucleotide 3' phosphodiesterase protein-coding gene gene with protein product Approved 17q21.2 17q21.2 1991-07-15 2016-10-05 1267 ENSG00000173786 OTTHUMG00000133502 uc002hyl.2 XM_006721701 "CCDS11414|CCDS82123" P09543 1322358 MGI:88437 RGD:2368 CNP 123830 3.1.4.37 +HGNC:25220 CNPPD1 cyclin Pas1/PHO80 domain containing 1 protein-coding gene gene with protein product Approved 2q35 02q35 CGI-57 C2orf24 chromosome 2 open reading frame 24 2004-04-29 2011-03-23 2011-03-23 2016-10-05 27013 ENSG00000115649 OTTHUMG00000133132 uc002vjv.4 AF070638 NM_015680 CCDS2433 Q9BV87 "8619474|9110174" MGI:1916421 RGD:735175 CNPPD1 +HGNC:27786 CNPY1 canopy FGF signaling regulator 1 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 canopy 1 homolog (zebrafish) 2006-12-04 2013-07-23 2014-11-19 285888 ENSG00000146910 OTTHUMG00000151353 uc064jov.1 XM_001129537 CCDS43684 Q3B7I2 16488878 MGI:2442451 RGD:1583296 CNPY1 612493 +HGNC:13529 CNPY2 canopy FGF signaling regulator 2 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "HP10390|ZSIG9|Cnpy2" TMEM4 "transmembrane protein 4|canopy 2 homolog (zebrafish)" 2000-09-20 2007-10-22 2013-07-23 2015-08-24 10330 ENSG00000257727 OTTHUMG00000170330 uc001sku.3 AB015631 NM_014255 CCDS8914 Q9Y2B0 "10072769|15905959" MGI:1928477 RGD:1589072 CNPY2 605861 +HGNC:11968 CNPY3 canopy FGF signaling regulator 3 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 CAG4A TNRC5 "trinucleotide repeat containing 5|canopy 3 homolog (zebrafish)" Trinucleotide repeat containing 775 2000-01-27 2007-10-22 2013-07-23 2015-09-11 10695 ENSG00000137161 OTTHUMG00000014708 uc003ota.5 U80744 NM_006586 CCDS4875 Q9BT09 9225980 MGI:1919279 RGD:1597709 CNPY3 610774 +HGNC:28631 CNPY4 canopy FGF signaling regulator 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MGC40499|PRAT4B" protein associated with TLR4 canopy 4 homolog (zebrafish) 2007-10-22 2013-07-23 2015-09-11 245812 ENSG00000166997 OTTHUMG00000154817 uc003uto.4 AK075537 NM_152755 CCDS34701 Q8N129 12975309 MGI:1913705 RGD:1307636 CNPY4 610047 +HGNC:2159 CNR1 cannabinoid receptor 1 protein-coding gene gene with protein product Approved 6q15 06q15 "CB1K5|CB-R|CB1|CANN6|CB1A" CNR cannabinoid receptor 1 (brain) Cannabinoid receptors 202 1991-05-15 2016-07-01 2016-10-05 1268 ENSG00000118432 OTTHUMG00000015184 uc003pmq.5 AF107262 XM_017010238 "CCDS5015|CCDS5016" P21554 MGI:104615 RGD:2369 CNR1 114610 objectId:56 +HGNC:2160 CNR2 cannabinoid receptor 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 CB2 cannabinoid receptor 2 (macrophage) Cannabinoid receptors 202 1994-01-10 2015-11-06 2016-10-05 1269 ENSG00000188822 OTTHUMG00000013892 uc001bif.4 X74328 NM_001841 CCDS245 P34972 MGI:104650 RGD:619713 CNR2 605051 objectId:57 +HGNC:24546 CNRIP1 cannabinoid receptor interacting protein 1 protein-coding gene gene with protein product Approved 2p14 02p14 "DKFZP566K1924|CRIP1|CRIP1a|CRIP1b" C2orf32 chromosome 2 open reading frame 32 2004-06-01 2007-11-29 2007-11-29 2016-10-05 25927 ENSG00000119865 OTTHUMG00000129565 uc002sek.5 AL110235 NM_015463 "CCDS1886|CCDS46311" Q96F85 20590557 MGI:1917505 RGD:1308373 CNRIP1 +HGNC:26486 CNST consortin, connexin sorting protein protein-coding gene gene with protein product Approved 1q44 01q44 "FLJ32001|PPP1R64" protein phosphatase 1, regulatory subunit 64 C1orf71 chromosome 1 open reading frame 71 Protein phosphatase 1 regulatory subunits 694 2005-05-18 2009-11-03 2009-11-03 2015-08-24 163882 ENSG00000162852 OTTHUMG00000040090 uc001ibp.4 AK056563 NM_152609 "CCDS1628|CCDS44343" Q6PJW8 19864490 MGI:2445141 RGD:1564833 CNST 613439 +HGNC:26847 CNTD1 cyclin N-terminal domain containing 1 protein-coding gene gene with protein product Approved 17q21.2-q21.31 17q21.2-q21.31 FLJ40137 CNTD cyclin N-terminal domain containing 2005-12-16 2006-03-31 2006-03-31 2016-10-11 124817 ENSG00000176563 OTTHUMG00000180652 uc002ibm.5 AK097456 NM_173478 "CCDS11440|CCDS82131" Q8N815 24891606 MGI:1923965 RGD:1564542 CNTD1 +HGNC:25805 CNTD2 cyclin N-terminal domain containing 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ13265|CCNP" cyclin P 2006-03-31 2016-04-25 79935 ENSG00000105219 OTTHUMG00000160481 uc010xvi.2 AK023327 NM_024877 CCDS12551 Q9H8S5 11237006 CNTD2 +HGNC:2169 CNTF ciliary neurotrophic factor protein-coding gene gene with protein product Approved 11q12.1 11q12.1 HCNTF Interleukin 6 cytokine family 1264 1991-01-07 2016-10-05 1270 ENSG00000242689 OTTHUMG00000137476 uc001nna.5 BC068030 NM_000614 CCDS31554 P26441 "1840538|1714745" MGI:88439 RGD:2370 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ CNTF 118945 +HGNC:2170 CNTFR ciliary neurotrophic factor receptor protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "Fibronectin type III domain containing|Immunoglobulin like domain containing" "555|594" 1992-09-22 2016-10-05 1271 ENSG00000122756 OTTHUMG00000019821 uc022bgg.2 M73238 XM_017014260 CCDS6558 P26992 1648265 MGI:99605 RGD:1303100 CNTFR 118946 objectId:1711 +HGNC:48712 CNTFR-AS1 CNTFR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p13.3 09p13.3 2013-06-07 2013-06-07 415056 ENSG00000237159 OTTHUMG00000000441 "BC038740|BC042806" NR_024369 +HGNC:23432 CNTLN centlein protein-coding gene gene with protein product Approved 9p22.2 09p22.2 "FLJ20276|bA340N12.1|OTTHUMG00000019597" "C9orf101|C9orf39" "chromosome 9 open reading frame 101|chromosome 9 open reading frame 39|centlein, centrosomal protein" 2003-11-18 2008-02-08 2015-11-27 2016-10-05 54875 ENSG00000044459 OTTHUMG00000019599 uc003zmy.5 AK000283 NM_017738 "CCDS43789|CCDS47953" Q9NXG0 18086554 MGI:2443104 RGD:1308101 CNTLN 611870 +HGNC:2171 CNTN1 contactin 1 protein-coding gene gene with protein product Approved 12q12 12q12 "F3|GP135" glycoprotein gP135 "Endogenous ligands|Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "542|555|593|594" 1994-02-18 2016-01-15 1272 ENSG00000018236 OTTHUMG00000169362 uc001rmm.3 Z21488 NM_001843 "CCDS8737|CCDS8738|CCDS58225" Q12860 "7959734|8586965" MGI:105980 RGD:621300 CNTN1 600016 212878 +HGNC:2172 CNTN2 contactin 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "TAG-1|TAX1" "TAX|AXT" contactin 2 (axonal) "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2000-05-26 2015-12-10 2015-12-10 6900 ENSG00000184144 OTTHUMG00000037105 uc001hbr.4 X67734 NM_005076 CCDS1449 Q02246 "8307567|8586965" MGI:104518 RGD:3821 CNTN2 190197 332465 +HGNC:2173 CNTN3 contactin 3 protein-coding gene gene with protein product Approved 3p12.3 03p12.3 BIG-1 PANG contactin 3 (plasmacytoma associated) "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2000-05-26 2015-12-10 2015-12-10 5067 ENSG00000113805 OTTHUMG00000158813 uc003dpm.2 AB040929 NM_020872 CCDS33790 Q9P232 "8661054|8586965" MGI:99534 RGD:3253 CNTN3 601325 +HGNC:2174 CNTN4 contactin 4 protein-coding gene gene with protein product Approved 3p26.3-p26.2 03p26.3-p26.2 BIG-2 "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2000-05-26 2016-10-11 152330 ENSG00000144619 OTTHUMG00000119031 uc003bpc.4 AW665944 XM_017005782 "CCDS2558|CCDS43041" Q8IWV2 "8586965|12202991" MGI:1095737 RGD:621361 CNTN4 607280 166392 +HGNC:39985 CNTN4-AS1 CNTN4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p26.2 03p26.2 CNTN4 antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100873975 ENSG00000237990 OTTHUMG00000154875 uc062gbx.1 NR_046554 +HGNC:39986 CNTN4-AS2 CNTN4 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p26.3 03p26.3 CNTN4 antisense RNA 2 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100873976 ENSG00000227588 OTTHUMG00000156185 uc031rye.1 NR_046555 +HGNC:2175 CNTN5 contactin 5 protein-coding gene gene with protein product Approved 11q22.1 11q22.1 "NB-2|hNB-2" "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2000-05-26 2015-08-28 53942 ENSG00000149972 OTTHUMG00000167579 uc001pga.4 AB013802 NM_014361 "CCDS53696|CCDS53697|CCDS58168" O94779 MGI:3042287 RGD:621302 CNTN5 607219 +HGNC:2176 CNTN6 contactin 6 protein-coding gene gene with protein product Approved 3p26.3 03p26.3 NB-3 neural adhesion molecule "Fibronectin type III domain containing|I-set domain containing" "555|593" 2000-05-26 2015-09-11 27255 ENSG00000134115 OTTHUMG00000119030 uc003boz.5 AB003592 NM_014461 CCDS2557 Q9UQ52 9486763 MGI:1858223 RGD:62008 CNTN6 607220 +HGNC:8011 CNTNAP1 contactin associated protein 1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "p190|Caspr|CNTNAP" neurexin 4 NRXN4 1998-10-14 2016-10-05 8506 ENSG00000108797 OTTHUMG00000180643 uc002iay.4 U87223 NM_003632 CCDS11436 P78357 9118959 MGI:1858201 RGD:70902 CNTNAP1 602346 403662 +HGNC:13830 CNTNAP2 contactin associated protein-like 2 protein-coding gene gene with protein product Approved 7q35-q36.1 07q35-q36.1 "Caspr2|KIAA0868|NRXN4" 2001-06-01 2016-10-11 26047 ENSG00000174469 OTTHUMG00000152743 uc003weu.3 AF193613 XM_017011950 CCDS5889 Q9UHC6 "10624965|10048485" MGI:1914047 RGD:1307076 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=CNTNAP2 CNTNAP2 604569 165932 +HGNC:13834 CNTNAP3 contactin associated protein-like 3 protein-coding gene gene with protein product Approved 9p12 09p12 "CASPR3|KIAA1714|FLJ14195|CNTNAP3A" cell recognition molecule CASPR3 (FLJ14195, KIAA1714) 2004-05-06 2016-10-05 79937 ENSG00000106714 OTTHUMG00000019954 uc004abi.4 AF333769 NM_033655 CCDS6616 Q9BZ76 12093160 MGI:3588199 RGD:1563615 CNTNAP3 610517 +HGNC:32035 CNTNAP3B contactin associated protein-like 3B protein-coding gene gene with protein product Approved 9p11.2 09p11.2 2005-08-23 2016-10-05 728577 ENSG00000154529 OTTHUMG00000013174 uc004abq.3 BX538190 NM_001201380 CCDS75836 Q96NU0 15820314 CNTNAP3B +HGNC:49591 CNTNAP3P1 contactin associated protein-like 3 pseudogene 1 pseudogene pseudogene Approved 9q13 09q13 2014-01-20 2015-01-30 100420787 ENSG00000273509 OTTHUMG00000187791 NG_023920 PGOHUM00000304254 +HGNC:49589 CNTNAP3P2 contactin associated protein-like 3 pseudogene 2 pseudogene pseudogene Approved 9q21.11 09q21.11 2014-01-20 2015-01-30 643827 ENSG00000276386 OTTHUMG00000188266 NR_111893 PGOHUM00000304305 +HGNC:49580 CNTNAP3P3 contactin associated protein-like 3 pseudogene 3 pseudogene pseudogene Approved 9p12 09p12 2014-01-20 2015-01-30 106660623 NG_044948 PGOHUM00000304188 +HGNC:49581 CNTNAP3P4 contactin associated protein-like 3 pseudogene 4 pseudogene pseudogene Approved 9q12 09q12 2014-01-20 2015-01-30 107403150 NG_046801 PGOHUM00000303846 +HGNC:49588 CNTNAP3P5 contactin associated protein-like 3 pseudogene 5 pseudogene pseudogene Approved 9q13 09q13 2014-01-20 2015-01-30 100420786 ENSG00000278213 OTTHUMG00000187765 NG_023913 PGOHUM00000304246 +HGNC:49583 CNTNAP3P6 contactin associated protein-like 3 pseudogene 6 pseudogene pseudogene Approved 9p12 09p12 2014-01-20 2015-01-30 100420776 NG_023817 PGOHUM00000303808 +HGNC:49585 CNTNAP3P7 contactin associated protein-like 3 pseudogene 7 pseudogene pseudogene Approved 9p11.1 09p11.1 2014-01-20 2015-01-30 100420777 NG_023823 PGOHUM00000304222 +HGNC:49586 CNTNAP3P8 contactin associated protein-like 3 pseudogene 8 pseudogene pseudogene Approved 9p11.1 09p11.1 2014-01-20 2015-01-30 100420785 NG_023910 PGOHUM00000303837 +HGNC:49587 CNTNAP3P9 contactin associated protein-like 3 pseudogene 9 pseudogene pseudogene Approved 9p11.2 09p11.2 2014-01-20 2015-01-30 107403148 NG_046800 PGOHUM00000303918 +HGNC:18747 CNTNAP4 contactin associated protein like 4 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "CASPR4|KIAA1763" contactin associated protein-like 4 2004-05-10 2016-03-17 2016-04-25 85445 ENSG00000152910 OTTHUMG00000137617 uc032efc.1 AB051550 NM_033401 "CCDS10924|CCDS73915|CCDS82015" Q9C0A0 12093160 MGI:2183572 RGD:1306459 CNTNAP4 610518 +HGNC:18748 CNTNAP5 contactin associated protein like 5 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "caspr5|FLJ31966" contactin associated protein-like 5 2004-05-10 2016-05-26 2016-10-05 129684 ENSG00000155052 OTTHUMG00000153356 uc002tno.5 AB077881 XM_017003316 CCDS46401 Q8WYK1 MGI:3643623 RGD:1565194 CNTNAP5 610519 +HGNC:1858 CNTRL centriolin protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "CEP1|CEP110" "centrosomal protein 1|centrosomal protein 110kDa" 2000-06-08 2011-05-23 2011-05-23 2014-11-19 11064 ENSG00000119397 OTTHUMG00000020581 uc064vkk.1 AF513978 NM_007018 "CCDS35118|CCDS83409" Q7Z7A1 10688839 MGI:1889576 RGD:1305317 CNTRL 605496 +HGNC:29616 CNTROB centrobin, centriole duplication and spindle assembly protein protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "LIP8|PP1221" centrobin centrobin, centrosomal BRCA2 interacting protein 2006-01-13 2016-04-18 2016-04-18 116840 ENSG00000170037 OTTHUMG00000172932 uc060axf.1 AF331638 NM_053051 "CCDS32557|CCDS11126|CCDS82063" Q8N137 "11984006|16275750" MGI:2443290 RGD:1307488 CNTROB 611425 +HGNC:21868 COA1 cytochrome c oxidase assembly factor 1 homolog protein-coding gene gene with protein product Approved 7p13 07p13 "FLJ10803|MITRAC15" C7orf44 "chromosome 7 open reading frame 44|cytochrome c oxidase assembly factor 1 homolog (S. cerevisiae)" Mitochondrial respiratory chain complex assembly factors 645 2006-08-21 2012-06-25 2015-07-02 2015-07-02 55744 ENSG00000106603 OTTHUMG00000128949 uc064dcs.1 AK001665 NM_018224 "CCDS5471|CCDS83177" Q9GZY4 22356826 614769 +HGNC:24990 COA3 cytochrome c oxidase assembly factor 3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "HSPC009|MITRAC12|COX25" CCDC56 coiled-coil domain containing 56 Mitochondrial respiratory chain complex assembly factors 645 2006-01-12 2012-08-07 2012-10-15 2016-10-05 28958 ENSG00000183978 OTTHUMG00000180651 uc002ibl.5 AF070665 NM_014019 CCDS32660 Q9Y2R0 "22356826|22610097" MGI:1098757 RGD:1564337 614775 434612 +HGNC:24604 COA4 cytochrome c oxidase assembly factor 4 homolog protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "E2IG2|CMC3" CHCHD8 "coiled-coil-helix-coiled-coil-helix domain containing 8|cytochrome c oxidase assembly factor 4 homolog (S. cerevisiae)" "Coiled-coil-helix-coiled-coil-helix domain containing|Mitochondrial respiratory chain complex assembly factors" "489|645" 2005-09-13 2012-10-15 2015-07-02 2015-07-02 51287 ENSG00000181924 uc001ouj.4 AF242180 NM_016565 CCDS8225 Q9NYJ1 "11085516|20624914" MGI:1915435 RGD:1562228 COA4 608016 +HGNC:33848 COA5 cytochrome c oxidase assembly factor 5 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "MGC52110|FLJ27524|Pet191" C2orf64 chromosome 2 open reading frame 64 Mitochondrial respiratory chain complex assembly factors 645 2007-12-07 2011-07-19 2012-10-15 2014-11-18 493753 ENSG00000183513 OTTHUMG00000153101 uc002syz.4 NM_001008215 CCDS33257 Q86WW8 21457908 MGI:1923428 RGD:1565095 613920 267102 +HGNC:18025 COA6 cytochrome c oxidase assembly factor 6 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 C1orf31 "chromosome 1 open reading frame 31|cytochrome c oxidase assembly factor 6 homolog (S. cerevisiae)" Mitochondrial respiratory chain complex assembly factors 645 2002-02-05 2012-10-15 2014-11-25 2014-11-25 388753 ENSG00000168275 OTTHUMG00000037945 uc057qls.1 NM_001012985 "CCDS31059|CCDS55690|CCDS76275" Q5JTJ3 "22984289|25339201" MGI:1915142 RGD:7559315 COA6 614772 422397 +HGNC:25716 COA7 cytochrome c oxidase assembly factor 7 (putative) protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "FLJ12439|RESA1" respiratory chain assembly 1 "C1orf163|SELRC1" "chromosome 1 open reading frame 163|Sel1 repeat containing 1|cytochrome c oxidase assembly factor 7" Mitochondrial respiratory chain complex assembly factors 645 2005-07-18 2014-01-03 2014-01-17 2014-11-19 65260 ENSG00000162377 OTTHUMG00000008505 AK022501 NM_023077 CCDS570 Q96BR5 24333015 MGI:1917143 RGD:1305274 615623 +HGNC:29932 COASY Coenzyme A synthase protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "DPCK|NBP|CoASY|PPAT" CoA synthase 2004-03-22 2015-11-11 2015-11-11 80347 ENSG00000068120 OTTHUMG00000180245 uc002hzz.5 AF453478 NM_025233 "CCDS11429|CCDS45685" Q13057 "11923312|11980892" MGI:1918993 RGD:1549767 COASY 609855 401757 2.7.7.3 +HGNC:22199 COBL cordon-bleu WH2 repeat protein protein-coding gene gene with protein product Approved 7p12.1 07p12.1 KIAA0633 cordon-bleu homolog (mouse) 2004-01-30 2012-12-07 2016-10-05 23242 ENSG00000106078 OTTHUMG00000155999 uc003tpr.5 AB014533 NM_015198 "CCDS34637|CCDS75601|CCDS75602" O75128 MGI:105056 RGD:1312002 COBL 610317 +HGNC:23571 COBLL1 cordon-bleu WH2 repeat protein like 1 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 KIAA0977 "COBL-like 1|cordon-bleu WH2 repeat protein-like 1" 2004-01-30 2015-11-12 2015-11-12 22837 ENSG00000082438 OTTHUMG00000074019 uc061pbw.2 AB023194 NM_014900 "CCDS2223|CCDS63045|CCDS63046" Q53SF7 MGI:2442894 RGD:1308954 COBLL1 610318 +HGNC:2180 COCH cochlin protein-coding gene gene with protein product Approved 14q12 14q12 COCH-5B2 "DFNA31|DFNA9" "coagulation factor C (Limulus polyphemus homolog); cochlin|coagulation factor C homolog, cochlin (Limulus polyphemus)" 1998-10-16 2013-05-01 2016-10-05 1690 ENSG00000100473 OTTHUMG00000029432 uc001wqr.3 NM_004086 CCDS9640 O43405 9806553 MGI:1278313 RGD:1308536 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org COCH 603196 120681 +HGNC:2182 COD2 cone dystrophy 2 (X-linked) phenotype phenotype only Approved Xq27 Xq27 CORDX2 1997-08-18 2009-08-21 1275 9199568 300085 +HGNC:6545 COG1 component of oligomeric golgi complex 1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 KIAA1381 LDLB low density lipoprotein receptor defect B complementing Components of oligomeric golgi complex 493 2000-07-31 2002-05-31 2002-05-28 2015-08-24 9382 ENSG00000166685 OTTHUMG00000178344 uc002jjg.4 NM_018714 CCDS11692 Q8WTW3 9927668 MGI:1333873 RGD:1304594 COG1 606973 173556 +HGNC:6546 COG2 component of oligomeric golgi complex 2 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 LDLC low density lipoprotein receptor defect C complementing Components of oligomeric golgi complex 493 2000-07-31 2002-05-31 2002-05-28 2014-11-18 22796 ENSG00000135775 OTTHUMG00000037753 uc001htw.4 Z34975 NM_007357 "CCDS1584|CCDS44329" Q14746 7962052 MGI:1923582 RGD:1589822 COG2 606974 444810 +HGNC:18619 COG3 component of oligomeric golgi complex 3 protein-coding gene gene with protein product Approved 13q14.13 13q14.13 SEC34 Components of oligomeric golgi complex 493 2002-05-09 2016-10-05 83548 ENSG00000136152 OTTHUMG00000016855 uc001vak.4 AF131829 XR_429222 CCDS9398 Q96JB2 11980916 MGI:2450151 RGD:1304555 COG3 606975 +HGNC:18620 COG4 component of oligomeric golgi complex 4 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "COD1|DKFZP586E1519" Components of oligomeric golgi complex 493 2002-05-09 2015-08-24 25839 ENSG00000103051 OTTHUMG00000128515 uc002ezc.4 AL050101 XM_011522981 "CCDS10892|CCDS73909" Q9H9E3 11980916 MGI:2142808 RGD:1310549 COG4 606976 269762 +HGNC:14857 COG5 component of oligomeric golgi complex 5 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 GTC90 GOLTC1 golgi transport complex 1 (90 kDa subunit) Components of oligomeric golgi complex 493 2001-03-01 2002-05-10 2001-12-07 2016-10-05 10466 ENSG00000164597 OTTHUMG00000023895 uc003vec.3 AF058718 XR_001744532 "CCDS5742|CCDS5743|CCDS55152" Q9UP83 "9792665|11980916" MGI:2145130 RGD:1563296 COG5 606821 269752 +HGNC:18621 COG6 component of oligomeric golgi complex 6 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "COD2|KIAA1134" Components of oligomeric golgi complex 493 2002-05-09 2016-10-05 57511 ENSG00000133103 OTTHUMG00000016768 uc001uxh.3 AK026638 NM_020751 "CCDS9370|CCDS45042" Q9Y2V7 11980916 MGI:1914792 RGD:1303283 COG6 606977 365113 +HGNC:18622 COG7 component of oligomeric golgi complex 7 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 Components of oligomeric golgi complex 493 2002-05-09 2014-11-18 91949 ENSG00000168434 OTTHUMG00000094807 uc002dlo.4 AF070568 XR_429680 CCDS10610 P83436 11980916 MGI:2685013 RGD:1566058 COG7 606978 120686 +HGNC:18623 COG8 component of oligomeric golgi complex 8 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ22315|DOR1" Components of oligomeric golgi complex 493 2002-05-09 2014-11-18 84342 ENSG00000213380 OTTHUMG00000154277 uc002ewy.3 AK025968 NM_032382 CCDS10876 Q96MW5 11980916 MGI:2142885 RGD:1307074 COG8 606979 123357 +HGNC:2184 COIL coilin protein-coding gene gene with protein product Approved 17q22 17q22 "CLN80|p80-coilin" 2000-06-08 2015-08-24 8161 ENSG00000121058 OTTHUMG00000178126 uc002iuu.4 U06632 NM_004645 CCDS11592 P38432 7971277 MGI:104842 RGD:62031 COIL 600272 +HGNC:19927 COILP1 coilin pseudogene 1 pseudogene pseudogene Approved 14q21.1 14q21.1 COILP coilin pseudogene 2003-01-13 2006-09-21 2006-09-21 2006-09-21 317784 NG_002476 +HGNC:25389 COILP2 coilin pseudogene 2 pseudogene pseudogene Approved 4q28.1 04q28.1 2006-09-21 2016-10-05 494447 NG_004786 PGOHUM00000300362 +HGNC:2197 COL1A1 collagen type I alpha 1 chain protein-coding gene gene with protein product Approved 17q21.33 17q21.33 OI4 collagen, type I, alpha 1 Collagens 490 2001-06-22 2016-07-20 2016-10-12 1277 ENSG00000108821 OTTHUMG00000148674 uc002iqm.4 Z74615 XM_005257059 CCDS11561 P02452 "3178743|2857713" MGI:88467 RGD:61817 "Osteogenesis Imperfecta Variant Database|https://oi.gene.le.ac.uk/home.php?select_db=COL1A1|LRG_1|http://www.lrg-sequence.org/LRG/LRG_1" COL1A1 120150 120704 +HGNC:2198 COL1A2 collagen type I alpha 2 chain protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "alpha 2(I)-collagen|alpha-2 collagen type I|type I procollagen|collagen I, alpha-2 polypeptide|collagen of skin, tendon and bone, alpha-2 chain" OI4 "osteogenesis imperfecta type IV|collagen, type I, alpha 2|collagen type I alpha 2" Collagens 490 2001-06-22 2016-05-26 2016-10-12 1278 ENSG00000164692 OTTHUMG00000148675 uc003ung.1 Z74616 NM_000089 CCDS34682 P08123 "3857213|2897363" MGI:88468 RGD:621351 "Osteogenesis Imperfecta Variant Database|https://oi.gene.le.ac.uk/home.php?select_db=COL1A2|LRG_2|http://www.lrg-sequence.org/LRG/LRG_2" COL1A2 120160 120707 +HGNC:2199 COL1AR collagen type I alpha receptor other unknown Approved 15 15 collagen, type I, alpha, receptor 1989-05-08 2016-01-21 2016-01-21 1279 2840666 120340 +HGNC:2200 COL2A1 collagen type II alpha 1 chain protein-coding gene gene with protein product Approved 12q13.11 12q13.11 STL1 "SEDC|AOM" "collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital)|arthroophthalmopathy, progressive (Stickler syndrome)|collagen, type II, alpha 1|collagen type II alpha 1" Collagens 490 1986-01-01 2016-05-26 2016-10-05 1280 ENSG00000139219 OTTHUMG00000149896 uc001rqu.4 X16468 NM_001844 "CCDS8759|CCDS41778" P02458 1677770 MGI:88452 RGD:2375 LOVD - Center for Medical Genetics, Ghent, Belgium|http://medgen.ugent.be/LOVD2/home.php?select_db=COL2A1 COL2A1 120140 120710 +HGNC:2201 COL3A1 collagen type III alpha 1 chain protein-coding gene gene with protein product Approved 2q32.2 02q32.2 EDS4A "Ehlers-Danlos syndrome type IV, autosomal dominant|collagen, type III, alpha 1" Collagens 490 2001-06-22 2016-05-26 2016-10-12 1281 ENSG00000168542 OTTHUMG00000132648 uc002uqj.2 X15332 NM_000090 CCDS2297 P02461 "2780304|2834369" MGI:88453 RGD:71029 "Ehlers-Danlos Syndrome Variant Database|https://eds.gene.le.ac.uk/home.php?select_db=COL3A1|LRG_3|http://www.lrg-sequence.org/LRG/LRG_3" COL3A1 120180 120713 +HGNC:2202 COL4A1 collagen type IV alpha 1 chain protein-coding gene gene with protein product Approved 13q34 13q34 collagen, type IV, alpha 1 Collagens 490 2001-06-22 2016-05-26 2016-05-26 1282 ENSG00000187498 OTTHUMG00000017342 uc001vqw.4 J04217 XM_011521048 "CCDS9511|CCDS76649" P02462 3691802 MGI:88454 RGD:1307148 COL4A1 120130 120716 +HGNC:2203 COL4A2 collagen type IV alpha 2 chain protein-coding gene gene with protein product Approved 13q34 13q34 "FLJ22259|DKFZp686I14213" "canstatin|collagen type IV alpha 2" collagen type IV alpha 2 Collagens 490 2001-06-22 2016-07-20 2016-07-20 1284 ENSG00000134871 OTTHUMG00000017344 uc001vqx.4 AK025912 NM_001846 CCDS41907 P08572 "2439508|3025878" MGI:88455 RGD:1308085 COL4A2 120090 291813 +HGNC:40156 COL4A2-AS1 COL4A2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 COL4A2 antisense RNA 1 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874203 ENSG00000232814 OTTHUMG00000149649 uc031qnh.2 NR_046583 +HGNC:39849 COL4A2-AS2 COL4A2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q34 13q34 COL4A2 antisense RNA 2 (non-protein coding) 2011-05-18 2012-08-15 2014-11-18 100129836 ENSG00000224821 OTTHUMG00000149650 uc058yfx.1 NM_001267044 COL4A2-AS2 +HGNC:2204 COL4A3 collagen type IV alpha 3 chain protein-coding gene gene with protein product Approved 2q36.3 02q36.3 tumstatin collagen, type IV, alpha 3 (Goodpasture antigen) Collagens 490 1991-09-12 2016-05-26 2016-10-12 1285 ENSG00000169031 OTTHUMG00000149891 uc002vom.2 NM_000091 CCDS42829 Q01955 1737849 MGI:104688 RGD:71085 LRG_230|http://www.lrg-sequence.org/LRG/LRG_230 COL4A3 120070 120718 +HGNC:2205 COL4A3BP collagen type IV alpha 3 binding protein protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "GPBP|STARD11|CERT" "ceramide transporter|StAR-related lipid transfer (START) domain containing 11" collagen, type IV, alpha 3 (Goodpasture antigen) binding protein "Pleckstrin homology domain containing|StAR related lipid transfer domain containing" "682|759" 1999-07-14 2007-06-08 2016-01-21 2016-01-21 10087 ENSG00000113163 OTTHUMG00000102068 uc011csu.3 AF136450 NM_005713 "CCDS4028|CCDS4029|CCDS47235" Q9Y5P4 10212244 MGI:1915268 RGD:1309131 COL4A3BP 604677 +HGNC:2206 COL4A4 collagen type IV alpha 4 chain protein-coding gene gene with protein product Approved 2q36.3 02q36.3 CA44 collagen of basement membrane, alpha-4 chain collagen, type IV, alpha 4 Collagens 490 1992-06-25 2016-05-26 2016-10-12 1286 ENSG00000081052 OTTHUMG00000149892 uc061teu.1 NM_000092 CCDS42828 P53420 1639407 MGI:104687 RGD:1305355 LRG_231|http://www.lrg-sequence.org/LRG/LRG_231 COL4A4 120131 120720 +HGNC:2207 COL4A5 collagen type IV alpha 5 chain protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "ASLN|ATS" "Alport syndrome|collagen, type IV, alpha 5|collagen type IV alpha 5" Collagens 490 2001-06-22 2016-05-26 2016-10-12 1287 ENSG00000188153 OTTHUMG00000022182 uc065aqj.1 M90464 XM_011530849 "CCDS14543|CCDS35366" P29400 MGI:88456 RGD:1565499 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=COL4A5|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=COL4A5|LRG_232|http://www.lrg-sequence.org/LRG/LRG_232" COL4A5 303630 120722 +HGNC:2208 COL4A6 collagen type IV alpha 6 chain protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 collagen, type IV, alpha 6 Collagens 490 1993-10-01 2016-05-26 2016-10-12 1288 ENSG00000197565 OTTHUMG00000022179 uc033eqm.2 U04845 XM_006724617 "CCDS14541|CCDS14542|CCDS76008|CCDS76009|CCDS76010" Q14031 8356449 MGI:2152695 RGD:1589724 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=COL4A6|LRG_233|http://www.lrg-sequence.org/LRG/LRG_233" COL4A6 303631 120726 +HGNC:2209 COL5A1 collagen type V alpha 1 chain protein-coding gene gene with protein product Approved 9q34.3 09q34.3 alpha 1 type V collagen collagen type V alpha 1 Collagens 490 1992-02-26 2016-07-20 2016-10-12 1289 ENSG00000130635 OTTHUMG00000020891 uc004cfe.5 D90279 NM_000093 "CCDS6982|CCDS75932" P20908 "1572660|26910848" MGI:88457 RGD:70920 "Ehlers-Danlos Syndrome Variant Database|https://eds.gene.le.ac.uk/home.php?select_db=COL5A1|LRG_737|http://www.lrg-sequence.org/LRG/LRG_737" COL5A1 120215 120728 +HGNC:31368 COL5A1-AS1 COL5A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 bA54A22.4 C9orf104 "chromosome 9 open reading frame 104|COL5A1 antisense RNA 1 (non-protein coding)" 2004-06-02 2012-03-30 2012-08-15 2012-10-12 414316 ENSG00000204011 OTTHUMG00000020890 uc064wxh.1 "AI798815|CR748640" XR_930419 Q5SY13 +HGNC:2210 COL5A2 collagen type V alpha 2 chain protein-coding gene gene with protein product Approved 2q32.2 02q32.2 AB collagen collagen, type V, alpha 2 Collagens 490 2001-06-22 2016-05-26 2016-10-12 1290 ENSG00000204262 OTTHUMG00000149842 uc002uqk.4 Y14690 NM_000393 CCDS33350 P05997 1572660 MGI:88458 RGD:70921 "Ehlers-Danlos Syndrome Variant Database|https://eds.gene.le.ac.uk/home.php?select_db=COL5A2|LRG_738|http://www.lrg-sequence.org/LRG/LRG_738" COL5A2 120190 120730 +HGNC:14864 COL5A3 collagen type V alpha 3 chain protein-coding gene gene with protein product Approved 19p13.2 19p13.2 collagen type V alpha 3 Collagens 490 2001-03-01 2016-07-20 2016-07-20 50509 ENSG00000080573 OTTHUMG00000150019 uc002mmq.1 AF177941 NM_015719 CCDS12222 P25940 "10722718|26910848" MGI:1858212 RGD:70922 COL5A3 120216 +HGNC:2211 COL6A1 collagen type VI alpha 1 chain protein-coding gene gene with protein product Approved 21q22.3 21q22.3 collagen, type VI, alpha 1 Collagens 490 2001-06-22 2016-07-20 2016-10-12 1291 ENSG00000142156 OTTHUMG00000090440 uc002zhu.2 M20776 NM_001848 CCDS13727 P12109 23869615 MGI:88459 RGD:1565398 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/COL6A1|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=COL6A1|LRG_475|http://www.lrg-sequence.org/LRG/LRG_475" COL6A1 120220 120732 +HGNC:2212 COL6A2 collagen type VI alpha 2 chain protein-coding gene gene with protein product Approved 21q22.3 21q22.3 collagen type VI alpha 2 Collagens 490 2001-06-22 2016-07-20 2016-10-12 1292 ENSG00000142173 OTTHUMG00000090489 uc002zia.2 M20777 XR_937438 "CCDS13728|CCDS13729|CCDS13730" P12110 23869615 MGI:88460 RGD:1305585 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/COL6A2|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=COL6A2|LRG_476|http://www.lrg-sequence.org/LRG/LRG_476" COL6A2 120240 120734 +HGNC:2213 COL6A3 collagen type VI alpha 3 chain protein-coding gene gene with protein product Approved 2q37.3 02q37.3 collagen, type VI, alpha 3 Collagens 490 2001-06-22 2016-05-26 2016-10-12 1293 ENSG00000163359 OTTHUMG00000150020 uc002vwl.3 X52022 NM_004369 "CCDS33409|CCDS33410|CCDS33411|CCDS33412|CCDS54439" P12111 "1339440|11992252|23869615" MGI:88461 RGD:1308704 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/COL6A3|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=COL6A3|LRG_473|http://www.lrg-sequence.org/LRG/LRG_473" COL6A3 120250 120736 I02.968 +HGNC:33484 COL6A4P1 collagen type VI alpha 4 pseudogene 1 pseudogene pseudogene Approved 3p25.1 03p25.1 "VWA6|DIVA|COL6A4|COL6A4P" "von Willebrand factor A domain containing 6|collagen, type VI, alpha 4|collagen, type VI, alpha 4, pseudogene" DVWA "dual von Willebrand factor A domains|collagen, type VI, alpha 4 pseudogene 1" Collagens 490 2009-06-12 2010-05-24 2016-01-21 2016-01-21 344875 ENSG00000230524 OTTHUMG00000154983 AB299979 NR_027927 "19507504|19486942" 612397 PGOHUM00000237544 +HGNC:38501 COL6A4P2 collagen type VI alpha 4 pseudogene 2 pseudogene pseudogene Approved 3q22.1 03q22.1 COL6A4 collagen, type VI, alpha 4 collagen, type VI, alpha 4 pseudogene 2 Collagens 490 2010-05-24 2016-01-21 2016-01-21 646300 ENSG00000228252 OTTHUMG00000154984 BF593933 NR_027898 616612 PGOHUM00000238185 +HGNC:26674 COL6A5 collagen type VI alpha 5 chain protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "FLJ35880|VWA4" von Willebrand factor A domain containing 4 COL29A1 "collagen, type XXIX, alpha 1|collagen, type VI, alpha 5|collagen type VI alpha 5" Collagens 490 2008-01-18 2010-05-24 2016-07-20 2016-10-05 256076 ENSG00000172752 OTTHUMG00000159712 uc062ntv.1 AK093199 NM_153264 A8TX70 "17850181|23869615" MGI:3648134 RGD:1565804 COL6A5 611916 +HGNC:27023 COL6A6 collagen type VI alpha 6 chain protein-coding gene gene with protein product Approved 3q22.1 03q22.1 collagen, type VI, alpha 6 Collagens 490 2009-11-04 2016-07-20 2016-07-20 131873 ENSG00000206384 OTTHUMG00000159653 uc010htl.4 AL713792 NM_001102608 CCDS46911 A6NMZ7 23869615 MGI:2444259 RGD:1309172 COL6A6 616613 +HGNC:2214 COL7A1 collagen type VII alpha 1 chain protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "collagen VII, alpha-1 polypeptide|LC collagen" "EBDCT|EBD1|EBR1" "epidermolysis bullosa, dystrophic, dominant and recessive|collagen, type VII, alpha 1" "Collagens|Fibronectin type III domain containing" "490|555" 1991-11-01 2016-07-20 2016-10-12 1294 ENSG00000114270 OTTHUMG00000133541 uc003ctz.3 L02870 NM_000094 CCDS2773 Q02388 "1871109|12727020" MGI:88462 RGD:1311417 LRG_286|http://www.lrg-sequence.org/LRG/LRG_286 COL7A1 120120 120738 I02.967 +HGNC:2215 COL8A1 collagen type VIII alpha 1 chain protein-coding gene gene with protein product Approved 3q12.1 03q12.1 MGC9568 C3orf7 "chromosome 3 open reading frame 7|collagen, type VIII, alpha 1" Collagens 490 1991-08-17 2016-07-20 2016-10-05 1295 ENSG00000144810 OTTHUMG00000148669 uc003dtg.3 AF170702 NM_001850 CCDS2934 P27658 2029894 MGI:88463 RGD:1309361 COL8A1 120251 +HGNC:2216 COL8A2 collagen type VIII alpha 2 chain protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "PPCD|FECD1|PPCD2" FECD "collagen, type VIII, alpha 2|collagen type VIII alpha 2" Collagens 490 1991-07-16 2016-07-20 2016-10-05 1296 ENSG00000171812 OTTHUMG00000007665 uc057etn.1 M60832 NM_005202 "CCDS403|CCDS72756" P25067 11689488 MGI:88464 RGD:1305182 COL8A2 120252 120743 +HGNC:2217 COL9A1 collagen type IX alpha 1 chain protein-coding gene gene with protein product Approved 6q13 06q13 collagen, type IX, alpha 1 "Collagens|Collagen proteoglycans" "490|575" 1989-05-08 2016-07-20 2016-07-20 1297 ENSG00000112280 OTTHUMG00000014988 uc003pfg.5 XM_011535429 "CCDS4971|CCDS47447" P20849 "1429648|12399468" MGI:88465 RGD:1309425 COL9A1 120210 120748 +HGNC:2218 COL9A2 collagen type IX alpha 2 chain protein-coding gene gene with protein product Approved 1p34.2 01p34.2 MED EDM2 collagen, type IX, alpha 2 "Collagens|Collagen proteoglycans" "490|575" 1993-06-16 2016-07-20 2016-10-05 1298 ENSG00000049089 OTTHUMG00000005761 uc001cfh.2 M95610 NM_001852 CCDS450 Q14055 "8454052|8528240|1429648|21671392" MGI:88466 RGD:1307029 COL9A2 120260 120750 +HGNC:2219 COL9A3 collagen type IX alpha 3 chain protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "IDD|MED|EDM3|FLJ90759|DJ885L7.4.1" collagen type IX proteoglycan collagen, type IX, alpha 3 "Collagens|Collagen proteoglycans" "490|575" 1995-08-15 2016-07-20 2016-10-05 1299 ENSG00000092758 OTTHUMG00000032938 uc002ydm.3 AK075240 NM_001853 CCDS13505 Q14050 "8586434|1429648|24273071" MGI:894686 RGD:1310255 COL9A3 120270 120754 +HGNC:2185 COL10A1 collagen type X alpha 1 chain protein-coding gene gene with protein product Approved 6q22.1 06q22.1 Schmid metaphyseal chondrodysplasia collagen, type X, alpha 1 Collagens 490 1991-10-07 2016-05-26 2016-10-05 1300 ENSG00000123500 OTTHUMG00000015426 uc003pwm.4 XM_017010248 CCDS5105 Q03692 2037056 MGI:88445 RGD:2371 COL10A1 120110 120688 +HGNC:2186 COL11A1 collagen type XI alpha 1 chain protein-coding gene gene with protein product Approved 1p21.1 01p21.1 "STL2|CO11A1" collagen XI, alpha-1 polypeptide COLL6 collagen, type XI, alpha 1 Collagens 490 1989-05-08 2016-05-26 2016-10-05 1301 ENSG00000060718 OTTHUMG00000010872 uc001dul.4 J04177 NM_080630 "CCDS53348|CCDS778|CCDS780" P12107 3182841 MGI:88446 RGD:2372 COL11A1 120280 120690 +HGNC:2187 COL11A2 collagen type XI alpha 2 chain protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HKE5 "DFNA13|DFNB53" collagen, type XI, alpha 2 Collagens 490 1989-05-25 2016-07-20 2016-10-05 1302 ENSG00000204248 OTTHUMG00000031036 uc003ocy.2 U32169 XM_017010250 "CCDS43452|CCDS54992" P13942 "7559422|10581026|22246659" MGI:88447 RGD:2373 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org COL11A2 120290 120693 +HGNC:13947 COL11A2P1 collagen type XI alpha 2 pseudogene 1 pseudogene pseudogene Approved 6p21.32 06p21.32 cD0826Q1.1 COL11A2P "collagen, type XI, alpha 2 pseudogene|collagen, type XI, alpha 2 pseudogene 1" 2004-01-12 2013-01-17 2016-01-21 2016-01-21 394214 ENSG00000228688 OTTHUMG00000031065 NG_007926 PGOHUM00000243154 +HGNC:2188 COL12A1 collagen type XII alpha 1 chain protein-coding gene gene with protein product Approved 6q13-q14.1 06q13-q14.1 collagen type XII proteoglycan COL12A1L "collagen, type XII, alpha 1-like|collagen, type XII, alpha 1" "Collagens|Fibronectin type III domain containing|Collagen proteoglycans" "490|555|575" 1992-03-24 2016-05-26 2016-10-11 1303 ENSG00000111799 OTTHUMG00000015051 uc063ppm.1 U73779 NM_004370 "CCDS43481|CCDS43482" Q99715 9143499 MGI:88448 RGD:2374 COL12A1 120320 403672 +HGNC:2190 COL13A1 collagen type XIII alpha 1 chain protein-coding gene gene with protein product Approved 10q22.1 10q22.1 collagen, type XIII, alpha 1 Collagens 490 1988-08-05 2016-05-26 2016-10-05 1305 ENSG00000197467 OTTHUMG00000018394 uc057tul.1 AJ293624 NM_005203 "CCDS44419|CCDS44423|CCDS44424|CCDS44425|CCDS44427|CCDS44428" Q5TAT6 MGI:1277201 RGD:1595704 COL13A1 120350 447926 +HGNC:2191 COL14A1 collagen type XIV alpha 1 chain protein-coding gene gene with protein product Approved 8q24.12 08q24.12 UND "undulin|collagen, type XIV, alpha 1" "Collagens|Fibronectin type III domain containing" "490|555" 1998-12-15 2016-05-26 2016-10-05 7373 ENSG00000187955 OTTHUMG00000149877 uc003yox.5 NM_021110 CCDS34938 Q05707 "1716629|9427527" MGI:1341272 RGD:1305806 COL14A1 120324 311649 +HGNC:2192 COL15A1 collagen type XV alpha 1 chain protein-coding gene gene with protein product Approved 9q22.33 09q22.33 collagen type XV proteoglycan collagen, type XV, alpha 1 "Collagens|Collagen proteoglycans" "490|575" 1992-06-09 2016-05-26 2016-10-05 1306 ENSG00000204291 OTTHUMG00000020351 uc004azb.3 L25286 NM_001855 CCDS35081 P39059 1427836 MGI:88449 RGD:1310820 COL15A1 120325 +HGNC:2193 COL16A1 collagen type XVI alpha 1 chain protein-coding gene gene with protein product Approved 1p35.2 01p35.2 collagen, type XVI, alpha 1 Collagens 490 1992-09-14 2016-05-26 2016-10-05 1307 ENSG00000084636 OTTHUMG00000003883 uc001btk.2 M92642 NM_001856 CCDS41297 Q07092 1631157 MGI:1095396 RGD:1310982 COL16A1 120326 +HGNC:2194 COL17A1 collagen type XVII alpha 1 chain protein-coding gene gene with protein product Approved 10q25.1 10q25.1 BP180 BPAG2 collagen, type XVII, alpha 1 Collagens 490 1993-09-27 2016-07-20 2016-10-05 1308 ENSG00000065618 OTTHUMG00000018998 uc001kxr.4 M91669 "NM_130778|NM_000494" CCDS7554 Q9UMD9 "7916703|9748270" MGI:88450 RGD:1311130 COL17A1 113811 120698 +HGNC:2195 COL18A1 collagen type XVIII alpha 1 chain protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KS|KNO1" endostatin KNO "Knobloch syndrome, type 1|collagen, type XVIII, alpha 1" Collagens 490 1993-05-25 2016-05-26 2016-05-26 80781 ENSG00000182871 OTTHUMG00000090407 uc062awh.1 NM_030582 "CCDS42971|CCDS42972|CCDS77643" P39060 "8188291|8776601|10942434|17546652" MGI:88451 RGD:70936 COL18A1 120328 120702 +HGNC:23132 COL18A1-AS1 COL18A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 PRED80 "C21orf123|NCRNA00175" "chromosome 21 open reading frame 123|non-protein coding RNA 175|COL18A1 antisense RNA 1 (non-protein coding)" 2003-10-01 2011-08-11 2012-08-15 2014-11-19 378832 ENSG00000183535 OTTHUMG00000090401 uc011afr.1 AK096071 NR_027498 +HGNC:40155 COL18A1-AS2 COL18A1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 COL18A1 antisense RNA 2 (non-protein coding) 2011-08-11 2012-08-15 2014-11-19 100874236 ENSG00000224574 OTTHUMG00000137616 uc031rwa.1 NR_052004 +HGNC:2196 COL19A1 collagen type XIX alpha 1 chain protein-coding gene gene with protein product Approved 6q13 06q13 collagen, type XIX, alpha 1 Collagens 490 1996-10-02 2016-05-26 2016-10-05 1310 ENSG00000082293 OTTHUMG00000014987 uc032xam.2 XM_011535437 CCDS4970 Q14993 "7916703|9143499" MGI:1095415 RGD:1308920 COL19A1 120165 +HGNC:14670 COL20A1 collagen type XX alpha 1 chain protein-coding gene gene with protein product Approved 20q13.33 20q13.33 KIAA1510 collagen, type XX, alpha 1 "Collagens|Fibronectin type III domain containing" "490|555" 2005-07-15 2016-05-26 2016-05-26 57642 ENSG00000101203 OTTHUMG00000032964 uc011aau.2 BC043183 NM_020882 CCDS46628 Q9P218 10819331 MGI:1920618 RGD:1563901 COL20A1 +HGNC:17025 COL21A1 collagen type XXI alpha 1 chain protein-coding gene gene with protein product Approved 6p12.1 06p12.1 collagen, type XXI, alpha 1 Collagens 490 2001-10-18 2016-05-26 2016-10-05 81578 ENSG00000124749 OTTHUMG00000014907 uc003pcs.4 AF330693 XM_011514925 "CCDS55025|CCDS83099" Q96P44 11566190 COL21A1 610002 +HGNC:22989 COL22A1 collagen type XXII alpha 1 chain protein-coding gene gene with protein product Approved 8q24.23-q24.3 08q24.23-q24.3 collagen, type XXII, alpha 1 Collagens 490 2003-08-12 2016-07-20 2016-10-11 169044 ENSG00000169436 OTTHUMG00000150035 uc003yvd.3 AF406780 XM_291257 CCDS6376 Q8NFW1 15016833 MGI:1916950 RGD:1309081 COL22A1 610026 +HGNC:22990 COL23A1 collagen type XXIII alpha 1 chain protein-coding gene gene with protein product Approved 5q35.3 05q35.3 DKFZp434K0621 collagen, type XXIII, alpha 1 Collagens 490 2003-08-12 2016-05-26 2016-05-26 91522 ENSG00000050767 OTTHUMG00000130890 uc063kkp.1 AL137461 NM_173465 CCDS4436 Q86Y22 12644459 MGI:2653243 RGD:727898 COL23A1 610043 +HGNC:20821 COL24A1 collagen type XXIV alpha 1 chain protein-coding gene gene with protein product Approved 1p22.3 01p22.3 collagen, type XXIV, alpha 1 Collagens 490 2003-04-10 2016-07-20 2016-10-05 255631 ENSG00000171502 OTTHUMG00000010629 uc001dlj.4 AF410793 NM_152890 CCDS41353 Q17RW2 16373341 MGI:1918605 RGD:1565539 COL24A1 610025 +HGNC:18603 COL25A1 collagen type XXV alpha 1 chain protein-coding gene gene with protein product Approved 4q25 04q25 collagen, type XXV, alpha 1 Collagens 490 2003-04-10 2016-07-20 2016-07-20 84570 ENSG00000188517 OTTHUMG00000150039 uc062yyf.1 AF293340 NM_032518 "CCDS43258|CCDS43259|CCDS58922" Q9BXS0 11927537 MGI:1924268 RGD:1590105 COL25A1 610004 422551 +HGNC:18038 COL26A1 collagen type XXVI alpha 1 chain protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "Emu2|EMI6" Emu2 gene EMID2 "EMI domain containing 2|collagen, type XXVI, alpha 1" "Collagens|EMI domain containing" "490|540" 2003-04-10 2013-01-16 2016-07-20 2016-07-20 136227 ENSG00000160963 OTTHUMG00000150033 uc033aas.1 AJ416091 NM_133457 CCDS64739 Q96A83 "12221002|12145293" MGI:2155345 RGD:1591401 608927 +HGNC:22986 COL27A1 collagen type XXVII alpha 1 chain protein-coding gene gene with protein product Approved 9q32 09q32 "KIAA1870|MGC11337|FLJ11895" "collagen, type XXVII, alpha 1|collagen type XXVII alpha 1" Collagens 490 2003-08-12 2016-07-20 2016-10-05 85301 ENSG00000196739 OTTHUMG00000020537 uc011lxl.3 AB058773 NM_032888 CCDS6802 Q8IZC6 "12766169|12714037" MGI:2672118 RGD:735115 COL27A1 608461 441425 +HGNC:22442 COL28A1 collagen type XXVIII alpha 1 chain protein-coding gene gene with protein product Approved 7p21.3 07p21.3 collagen, type XXVIII, alpha 1 Collagens 490 2006-02-07 2016-05-26 2016-05-26 340267 ENSG00000215018 OTTHUMG00000150034 uc003src.2 AJ890451 NM_001037763 CCDS43553 Q2UY09 16330543 MGI:2685312 RGD:1564680 COL28A1 609996 +HGNC:33789 COLCA1 colorectal cancer associated 1 other unknown Approved 11q23.1 11q23.1 "FLJ45803|CASC12" cancer susceptibility candidate 12 C11orf92 chromosome 11 open reading frame 92 2009-03-03 2013-08-22 2013-08-22 2015-07-02 399948 ENSG00000196167 OTTHUMG00000166658 AK127703 NM_207429 Q6ZS62 "24154973|24760461" 615693 +HGNC:26978 COLCA2 colorectal cancer associated 2 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 CASC13 cancer susceptibility candidate 13 C11orf93 chromosome 11 open reading frame 93 2009-09-30 2013-08-22 2013-08-22 2013-10-11 120376 ENSG00000214290 OTTHUMG00000166657 BC042557 NM_001136105 "CCDS44728|CCDS73378" A8K830 21071539 MGI:2685530 RGD:1563866 615694 +HGNC:2220 COLEC10 collectin subfamily member 10 protein-coding gene gene with protein product Approved 8q24.12 08q24.12 CL-L1 collectin sub-family member 10 (C-type lectin) "Collectins|C-type lectin domain containing" "491|1298" 2000-04-11 2015-11-16 2016-01-15 10584 ENSG00000184374 OTTHUMG00000164971 uc003yoo.4 AB002631 NM_006438 CCDS6327 Q9Y6Z7 10224141 MGI:3606482 RGD:1307149 COLEC10 607620 +HGNC:17213 COLEC11 collectin subfamily member 11 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 "MGC3279|CL-K1" Collectin K1 "Collectins|C-type lectin domain containing" "491|1298" 2001-11-20 2015-11-16 2016-10-12 78989 ENSG00000118004 OTTHUMG00000090304 uc002qya.5 BC000078 NM_024027 "CCDS1649|CCDS1650|CCDS58689|CCDS58690|CCDS58691|CCDS58692|CCDS58693|CCDS58694" Q9BWP8 MGI:1918943 RGD:1309678 LRG_350|http://www.lrg-sequence.org/LRG/LRG_350 COLEC11 612502 260599 +HGNC:16016 COLEC12 collectin subfamily member 12 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 "SRCL|CL-P1|SCARA4" "Collectins|Scavenger receptors|C-type lectin domain containing" "491|1253|1298" 2001-12-13 2015-11-16 2015-11-16 81035 ENSG00000158270 OTTHUMG00000178145 uc002kkm.4 AB038518 XM_011525741 CCDS32782 Q5KU26 11162630 MGI:2152907 RGD:735039 COLEC12 607621 +HGNC:26182 COLGALT1 collagen beta(1-O)galactosyltransferase 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 FLJ22329 Procollagen galactosyltransferase GLT25D1 glycosyltransferase 25 domain containing 1 Collagen beta(1-O)galactosyltransferases 439 2004-09-16 2013-02-27 2013-02-27 2016-01-18 79709 ENSG00000130309 uc002nhc.2 AK075541 NM_024656 CCDS12363 Q8NBJ5 19075007 MGI:1924348 RGD:1309002 2.4.1.50 +HGNC:16790 COLGALT2 collagen beta(1-O)galactosyltransferase 2 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 KIAA0584 Procollagen galactosyltransferase "C1orf17|GLT25D2" "chromosome 1 open reading frame 17|glycosyltransferase 25 domain containing 2" Collagen beta(1-O)galactosyltransferases 439 2001-10-08 2013-02-27 2013-02-27 2016-10-05 23127 ENSG00000198756 OTTHUMG00000035460 uc001gqr.4 AF288389 NM_015101 CCDS1360 Q8IYK4 19075007 MGI:2138232 RGD:1304702 2.4.1.50 +HGNC:2225 COLOT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-08-19 +HGNC:2226 COLQ collagen like tail subunit of asymmetric acetylcholinesterase protein-coding gene gene with protein product Approved 3p25.1 03p25.1 EAD "single strand of homotrimeric collagen-like tail subunit of asymmetric acetylcholinesterase|collagenic tail of endplate acetylcholinesterase|AChE Q subunit|acetylcholinesterase-associated collagen" collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase 1998-09-14 2016-06-21 2016-10-05 8292 ENSG00000206561 OTTHUMG00000156233 uc003bzx.3 AF057036 NM_005677 "CCDS33709|CCDS43057|CCDS46768" Q9Y215 9689136 MGI:1338761 RGD:2377 ESTHER wwwserver: ESTerases and alpha/beta Hydrolase Enzymes & Relatives|http://bioweb.ensam.inra.fr/esther COLQ 603033 120761 +HGNC:23024 COMMD1 copper metabolism domain containing 1 protein-coding gene gene with protein product Approved 2p15 02p15 "MURR1|MGC27155" "copper metabolism gene MURR1|COMM domain containing 1" C2orf5 "chromosome 2 open reading frame 5 (MURR1)|copper metabolism (Murr1) domain containing 1" COMM domain containing 979 2003-08-26 2004-02-18 2016-01-07 2016-01-07 150684 ENSG00000173163 OTTHUMG00000129445 uc002sbp.4 BC022046 NM_152516 CCDS1869 Q8N668 "9001233|11809725" MGI:109474 RGD:1311771 COMMD1 607238 +HGNC:24993 COMMD2 COMM domain containing 2 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 HSPC042 COMM domain containing 979 2004-02-13 2004-02-20 51122 ENSG00000114744 OTTHUMG00000159616 uc003exj.2 AY542158 NM_016094 CCDS3145 Q86X83 15799966 MGI:1098806 RGD:1588810 COMMD2 616699 +HGNC:23332 COMMD3 COMM domain containing 3 protein-coding gene gene with protein product Approved 10p12.2 10p12.2 BUP C10orf8 chromosome 10 open reading frame 8 COMM domain containing 979 2003-11-10 2004-02-18 2004-02-13 2014-11-19 23412 ENSG00000148444 OTTHUMG00000017806 uc001irf.4 AY542159 NM_012071 CCDS7137 Q9UBI1 "11042152|15799966" MGI:88218 RGD:735116 COMMD3 616700 +HGNC:48326 COMMD3-BMI1 COMMD3-BMI1 readthrough other readthrough Approved 10p12.2 10p12.2 2013-05-08 2013-05-08 100532731 ENSG00000269897 OTTHUMG00000184031 NM_001204062 CCDS59213 MGI:88174 +HGNC:26027 COMMD4 COMM domain containing 4 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 FLJ20452 COMM domain containing 979 2004-02-13 2014-11-19 54939 ENSG00000140365 OTTHUMG00000142823 uc002azy.5 AY542160 NM_017828 "CCDS10277|CCDS66834|CCDS66835|CCDS73764|CCDS81909" Q9H0A8 15799966 MGI:1913449 RGD:1306104 COMMD4 616701 +HGNC:17902 COMMD5 COMM domain containing 5 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "HT002|FLJ13008|HCaRG" COMM domain containing 979 2004-02-13 2014-11-19 28991 ENSG00000170619 OTTHUMG00000165251 uc003zeo.5 AK023070 NM_014066 CCDS6436 Q9GZQ3 "15799966|10918053" MGI:1913648 RGD:621468 COMMD5 608216 +HGNC:24015 COMMD6 COMM domain containing 6 protein-coding gene gene with protein product Approved 13q22.2 13q22.2 Acrg COMM domain containing 979 2004-02-13 2016-10-05 170622 ENSG00000188243 OTTHUMG00000017089 uc058xmf.1 AY542161 XM_085023 "CCDS9451|CCDS9452" Q7Z4G1 15799966 MGI:1913450 RGD:1560745 COMMD6 612377 +HGNC:16223 COMMD7 COMM domain containing 7 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 dJ1085F17.3 C20orf92 chromosome 20 open reading frame 92 COMM domain containing 979 2001-07-17 2004-02-18 2004-02-13 2016-10-05 149951 ENSG00000149600 OTTHUMG00000032229 uc002wya.5 AY542162 NM_053041 "CCDS42864|CCDS46587" Q86VX2 15799966 MGI:1914197 RGD:1307786 COMMD7 616703 +HGNC:26036 COMMD8 COMM domain containing 8 protein-coding gene gene with protein product Approved 4p12 04p12 FLJ20502 COMM domain containing 979 2004-02-13 2014-11-19 54951 ENSG00000169019 OTTHUMG00000099435 uc003gxi.4 AY542163 NM_017845 CCDS3475 Q9NX08 15799966 MGI:1343485 RGD:1305402 COMMD8 616656 +HGNC:25014 COMMD9 COMM domain containing 9 protein-coding gene gene with protein product Approved 11p13 11p13 "HSPC166|FLJ31106" COMM domain containing 979 2004-02-13 2014-11-18 29099 ENSG00000110442 OTTHUMG00000166333 uc001mwn.5 AY542164 NM_014186 "CCDS7900|CCDS44571|CCDS76395" Q9P000 15799966 MGI:1923751 RGD:1307706 COMMD9 612299 +HGNC:30201 COMMD10 COMM domain containing 10 protein-coding gene gene with protein product Approved 5q23.1 05q23.1 PTD002 COMM domain containing 979 2004-02-13 2014-11-19 51397 ENSG00000145781 OTTHUMG00000162922 uc003krt.2 AY542165 NM_016144 "CCDS34215|CCDS78049" Q9Y6G5 15799966 MGI:1916706 RGD:1303015 COMMD10 616704 +HGNC:2227 COMP cartilage oligomeric matrix protein protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "MED|THBS5" thrombospondin-5 "PSACH|EDM1|EPD1" cartilage oligomeric matrix protein (pseudoachondroplasia, epiphyseal dysplasia 1, multiple) 1994-05-24 2016-10-05 1311 ENSG00000105664 OTTHUMG00000169318 uc002nke.4 L32137 NM_000095 CCDS12385 P49747 "7713493|8307576" MGI:88469 RGD:2378 COMP 600310 120763 +HGNC:2228 COMT catechol-O-methyltransferase protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2001-06-22 2016-10-12 1312 ENSG00000093010 OTTHUMG00000150529 uc002zqu.4 NM_000754 "CCDS13770|CCDS46663" P21964 1572656 MGI:88470 RGD:2379 LRG_1010|http://www.lrg-sequence.org/LRG/LRG_1010 COMT 116790 241992 objectId:2472 2.1.1.6 +HGNC:26309 COMTD1 catechol-O-methyltransferase domain containing 1 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 FLJ23841 2004-05-27 2015-08-24 118881 ENSG00000165644 OTTHUMG00000018518 uc001jxb.4 NM_144589 CCDS7349 Q86VU5 12975309 MGI:1916406 RGD:1306581 COMTD1 +HGNC:2230 COPA coatomer protein complex subunit alpha protein-coding gene gene with protein product Approved 1q23.2 01q23.2 HEP-COP "proxenin|xenin" coatomer protein complex, subunit alpha "WD repeat domain containing|Endogenous ligands" "362|542" 1996-11-15 2015-11-12 2015-11-12 1314 ENSG00000122218 OTTHUMG00000033111 uc009wti.4 U24105 NM_004371 "CCDS1202|CCDS41424" P53621 8647451 MGI:1334462 RGD:1310525 COPA 601924 448689 +HGNC:2231 COPB1 coatomer protein complex subunit beta 1 protein-coding gene gene with protein product Approved 11p15.2 11p15.2 COPB "coatomer protein complex, subunit beta|coatomer protein complex, subunit beta 1" 1996-11-15 2006-06-30 2015-11-12 2015-11-12 1315 ENSG00000129083 OTTHUMG00000165824 uc001mli.3 BC037280 NM_016451 CCDS7815 P53618 7982906 MGI:1917599 RGD:620861 COPB1 600959 +HGNC:2232 COPB2 coatomer protein complex subunit beta 2 protein-coding gene gene with protein product Approved 3q23 03q23 "beta'-COP|betaprime-COP" coatomer protein complex subunit beta prime "coatomer protein complex, subunit beta 2 (beta prime)|coatomer protein complex subunit beta 2 (beta prime)" WD repeat domain containing 362 1999-04-23 2016-04-06 2016-04-06 9276 ENSG00000184432 OTTHUMG00000159959 uc003etf.5 BC000326 NM_004766 CCDS3108 P35606 9858824 MGI:1354962 RGD:628746 COPB2 606990 +HGNC:2234 COPE coatomer protein complex subunit epsilon protein-coding gene gene with protein product Approved 19p13.11 19p13.11 epsilon-COP coatomer protein complex, subunit epsilon 1999-09-28 2015-11-12 2015-11-12 11316 ENSG00000105669 OTTHUMG00000183052 uc002nkk.4 AJ131182 NM_007263 "CCDS12387|CCDS12388|CCDS12389|CCDS82321" O14579 10469566 MGI:1891702 RGD:1306785 COPE 606942 +HGNC:2236 COPG1 coatomer protein complex subunit gamma 1 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 coat protein gamma-cop COPG "coatomer protein complex, subunit gamma|coatomer protein complex, subunit gamma 1" 1999-09-28 2012-02-23 2015-11-12 2015-11-12 22820 ENSG00000181789 OTTHUMG00000159451 uc003els.4 AB047846 NM_016128 CCDS33851 Q9Y678 11056392 MGI:1858696 RGD:1565292 615525 +HGNC:2237 COPG2 coatomer protein complex subunit gamma 2 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 2-COP coat protein, nonclathrin, gamma-2-cop coatomer protein complex, subunit gamma 2 1999-12-17 2015-11-12 2016-10-05 26958 ENSG00000158623 OTTHUMG00000155364 uc033ahl.2 AF157833 NM_012133 "CCDS75662|CCDS78275" Q9UBF2 "10556286|10995575" MGI:1858683 RGD:1566215 COPG2 604355 +HGNC:2238 COPG2IT1 COPG2 imprinted transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 7q32 07q32 "CIT1|NCRNA00170|COPG2AS" "non-protein coding RNA 170|COPG2 antisense RNA (non-protein coding)|Copg2 intronic transcript 1" coatomer protein complex, subunit gamma 2, intronic transcript 1 2000-05-19 2009-01-29 2009-01-29 2012-10-16 53844 AF038190 NR_024086 10995575 610581 +HGNC:28848 COPRS coordinator of PRMT5 and differentiation stimulator protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "TTP1|HSA272196|COPR5" cooperator of PRMT5 C17orf79 "chromosome 17 open reading frame 79|coordinator of PRMT5, differentiation stimulator" 2006-01-26 2012-11-16 2016-04-12 2016-04-12 55352 ENSG00000172301 OTTHUMG00000132812 uc002hgp.4 AJ272196 NM_018405 "CCDS11268|CCDS82100" Q9NQ92 "10843809|18404153" MGI:1913673 RGD:1565675 +HGNC:30747 COPS2 COP9 signalosome subunit 2 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "TRIP15|ALIEN|CSN2" COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) COP9 signalosome 932 2004-11-03 2013-03-14 2014-11-19 9318 ENSG00000166200 OTTHUMG00000172324 uc001zxf.4 AF212227 NM_004236 "CCDS32235|CCDS45257" P61201 "7776974|9535219" MGI:1330276 RGD:628791 COPS2 604508 +HGNC:2239 COPS3 COP9 signalosome subunit 3 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "SGN3|CSN3" "COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 3|COP9 constitutive photomorphogenic homolog subunit 3 (Arabidopsis)" COP9 signalosome 932 1998-10-06 2013-03-14 2014-11-19 8533 ENSG00000141030 OTTHUMG00000059281 uc002grd.4 AF031647 XM_005256837 "CCDS11183|CCDS56022" Q9UNS2 "9535219|10191102" MGI:1349409 RGD:1303002 COPS3 604665 +HGNC:16702 COPS4 COP9 signalosome subunit 4 protein-coding gene gene with protein product Approved 4q21.22 04q21.22 CSN4 "COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 4|COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)" COP9 signalosome 932 2001-09-27 2013-03-14 2015-08-24 51138 ENSG00000138663 OTTHUMG00000130298 uc003hoa.4 AF100757 NM_001330727 "CCDS3600|CCDS58909|CCDS82935" Q9BT78 9707402 MGI:1349414 RGD:1302952 COPS4 616008 +HGNC:2240 COPS5 COP9 signalosome subunit 5 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 "JAB1|SGN5|MOV-34|CSN5" "COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 5|COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)" COP9 signalosome 932 2000-06-08 2013-03-14 2013-03-14 10987 ENSG00000121022 OTTHUMG00000164563 uc003xxe.4 U65928 NM_006837 CCDS6198 Q92905 "8837781|9341143" MGI:1349415 RGD:1310301 COPS5 604850 M67.A02 +HGNC:24332 COPS5P1 COP9 signalosome subunit 5 pseudogene 1 pseudogene pseudogene Approved 6q16.1 06q16.1 COPS5P COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis) pseudogene 2007-07-31 2013-03-14 2013-03-14 2016-07-22 135270 ENSG00000213187 OTTHUMG00000015226 NG_003102 PGOHUM00000301476 +HGNC:45266 COPS5P2 COP9 signalosome subunit 5 pseudogene 2 pseudogene pseudogene Approved 12q24.31 12q24.31 2013-03-14 2016-07-22 PGOHUM00000291484 +HGNC:21749 COPS6 COP9 signalosome subunit 6 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MOV34-34KD|CSN6" COP9 subunit 6 (MOV34 homolog, 34 kD) COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis) COP9 signalosome 932 2003-10-28 2013-03-14 2014-11-19 10980 ENSG00000168090 OTTHUMG00000154632 uc003usu.4 BC002520 NM_006833 CCDS5682 Q7L5N1 12477932 MGI:1349439 RGD:1309919 COPS6 614729 M67.972 +HGNC:16758 COPS7A COP9 signalosome subunit 7A protein-coding gene gene with protein product Approved 12p13.31 12p13.31 CSN7A "COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 7A|COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis)" COP9 signalosome 932 2001-10-03 2013-03-14 2015-08-24 50813 ENSG00000111652 OTTHUMG00000169182 uc001qqj.4 AF193844 XM_005253694 CCDS8558 Q9UBW8 MGI:1349400 RGD:1310070 COPS7A 616009 +HGNC:16760 COPS7B COP9 signalosome subunit 7B protein-coding gene gene with protein product Approved 2q37.1 02q37.1 CSN7B "COP9 (constitutive photomorphogenic, Arabidopsis, homolog) subunit 7B|COP9 constitutive photomorphogenic homolog subunit 7B (Arabidopsis)" COP9 signalosome 932 2001-10-03 2013-03-14 2014-11-18 64708 ENSG00000144524 OTTHUMG00000133228 uc061tnp.1 AK022674 NM_022730 "CCDS2488|CCDS63152|CCDS63153|CCDS63154|CCDS74668|CCDS77539" Q9H9Q2 9707402 MGI:1349388 RGD:1306918 COPS7B 616010 +HGNC:24335 COPS8 COP9 signalosome subunit 8 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "COP9|CSN8|MGC1297|SGN8" COP9 constitutive photomorphogenic homolog subunit 8 (Arabidopsis) COP9 signalosome 932 2004-01-05 2013-03-14 2015-08-24 10920 ENSG00000198612 OTTHUMG00000133297 uc002vwh.4 NM_006710 "CCDS2517|CCDS42835" Q99627 "7634324|12732143" MGI:1915363 RGD:1311404 COPS8 616011 +HGNC:45269 COPS8P1 COP9 signalosome subunit 8 pseudogene 1 pseudogene pseudogene Approved Xq21.2 Xq21.2 2013-03-15 2013-03-15 260342 NG_002325 PGOHUM00000241426 +HGNC:45270 COPS8P2 COP9 signalosome subunit 8 pseudogene 2 pseudogene pseudogene Approved 3p14.1 03p14.1 2013-03-15 2013-03-15 375350 ENSG00000214552 OTTHUMG00000158747 NG_003103 PGOHUM00000250284 +HGNC:45271 COPS8P3 COP9 signalosome subunit 8 pseudogene 3 pseudogene pseudogene Approved 11q14.1 11q14.1 2013-03-15 2013-03-15 106479058 ENSG00000254697 OTTHUMG00000166759 NG_044561 PGOHUM00000242812 +HGNC:21314 COPS9 COP9 signalosome subunit 9 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 CSNAP CSN acidic protein MYEOV2 myeloma overexpressed 2 2005-06-24 2016-04-19 2016-04-19 2016-04-19 150678 ENSG00000172428 OTTHUMG00000133352 uc010zof.2 AF453951 NM_138336 "CCDS2532|CCDS63183" Q8WXC6 "23776465|26456823" MGI:1914165 RGD:1596701 +HGNC:2243 COPZ1 coatomer protein complex subunit zeta 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 CGI-120 COPZ "coatomer protein complex, subunit zeta|coatomer protein complex, subunit zeta 1" 1999-09-28 2003-07-23 2015-11-12 2016-10-05 22818 ENSG00000111481 OTTHUMG00000169762 uc001sfs.3 AF151878 NM_016057 "CCDS8877|CCDS61137|CCDS61138|CCDS61139" P61923 MGI:1929063 RGD:1306154 COPZ1 615472 +HGNC:19356 COPZ2 coatomer protein complex subunit zeta 2 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 MGC23008 "nonclathrin coat protein zeta-COP|zeta2-COP|zeta-2 coat protein" coatomer protein complex, subunit zeta 2 2002-10-09 2015-11-12 2015-11-12 51226 ENSG00000005243 OTTHUMG00000178684 uc032flu.2 AB037938 NM_016429 CCDS74092 Q9P299 11056392 MGI:1929008 RGD:1306948 COPZ2 615526 +HGNC:2229 COP entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-02-23 +HGNC:25223 COQ2 coenzyme Q2, polyprenyltransferase protein-coding gene gene with protein product Approved 4q21.23 04q21.23 "CL640|FLJ26072" 4-hydroxybenzoate polyprenyltransferase coenzyme Q2 homolog, prenyltransferase (yeast) 2005-07-05 2016-03-21 2016-04-25 27235 ENSG00000173085 OTTHUMG00000160940 uc003hog.3 NM_015697 CCDS47090 Q96H96 "15153069|17332895" MGI:1919133 RGD:1306722 COQ2 609825 120770 2.5.1.39 +HGNC:18175 COQ3 coenzyme Q3, methyltransferase protein-coding gene gene with protein product Approved 6q16.2 06q16.2 bA9819.1 polyprenyldihydroxybenzoate methyltransferase "coenzyme Q3 homolog, methyltransferase (yeast)|coenzyme Q3 homolog, methyltransferase (S. cerevisiae)" 2002-11-22 2016-03-21 2016-10-05 51805 ENSG00000132423 OTTHUMG00000015264 uc003ppk.4 AF193016 NM_017421 CCDS5042 Q9NZJ6 10777520 MGI:101813 RGD:2380 COQ3 605196 2.1.1.114 +HGNC:19693 COQ4 coenzyme Q4 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 CGI-92 "coenzyme Q4 homolog (yeast)|coenzyme Q4 homolog (S. cerevisiae)" 2003-01-10 2013-10-18 2016-10-05 51117 ENSG00000167113 OTTHUMG00000020743 uc004bur.5 AF151850 NM_016035 CCDS6898 Q9Y3A0 "11469793|18474229" MGI:1098826 RGD:1304638 COQ4 612898 460622 +HGNC:28722 COQ5 coenzyme Q5, methyltransferase protein-coding gene gene with protein product Approved 12q24.31 12q24.31 MGC4767 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase "coenzyme Q5 homolog, methyltransferase (yeast)|coenzyme Q5 homolog, methyltransferase (S. cerevisiae)" 2006-01-13 2015-07-02 2015-09-11 84274 ENSG00000110871 OTTHUMG00000169375 uc001tyn.4 AK057777 NM_032314 CCDS31912 Q5HYK3 25152161 MGI:1098643 RGD:1310857 COQ5 616359 2.1.1.201 +HGNC:20233 COQ6 coenzyme Q6, monooxygenase protein-coding gene gene with protein product Approved 14q24.3 14q24.3 CGI-10 "coenzyme Q6 homolog (yeast)|coenzyme Q6 homolog, monooxygenase (yeast)|coenzyme Q6 homolog, monooxygenase (S. cerevisiae)|coenzyme Q6 monooxygenase" 2003-01-10 2016-03-21 2016-10-05 51004 ENSG00000119723 OTTHUMG00000171260 uc001xph.4 AF132944 XM_011536809 "CCDS9823|CCDS9824" Q9Y2Z9 21540551 MGI:1924408 RGD:1311149 COQ6 614647 280409 1.14.13.- +HGNC:2244 COQ7 coenzyme Q7, hydroxylase protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "CLK-1|CAT5" 5-demethoxyubiquinone hydroxylase "coenzyme Q, 7 (rat, yeast) homolog|coenzyme Q7 homolog, ubiquinone (yeast)" 1998-09-29 2016-03-21 2016-03-21 10229 ENSG00000167186 OTTHUMG00000131455 uc002dfr.4 U81276 NM_016138 "CCDS10574|CCDS53993" Q99807 "9020081|10373325" MGI:107207 RGD:2381 COQ7 601683 +HGNC:16812 COQ8A coenzyme Q8A protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "COQ8|SCAR9" coenzyme Q8 homolog (yeast) "CABC1|ADCK3" "chaperone-ABC1 (activity of bc1 complex, S.pombe)-like|chaperone, ABC1 activity of bc1 complex like (S. pombe)|chaperone, ABC1 activity of bc1 complex homolog (S. pombe)|aarF domain containing kinase 3" 2001-10-31 2016-07-07 2016-07-07 2016-10-12 56997 ENSG00000163050 OTTHUMG00000037621 uc001hqm.2 AJ278126 NM_020247 CCDS1557 Q8NI60 "18319072|18319074|25498144" MGI:1914676 RGD:1308245 LRG_1092|http://www.lrg-sequence.org/LRG/LRG_1092 606980 140053 objectId:1927 +HGNC:19041 COQ8B coenzyme Q8B protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ12229|COQ8" ADCK4 aarF domain containing kinase 4 2003-07-21 2016-07-07 2016-07-07 2016-07-07 79934 ENSG00000123815 OTTHUMG00000182620 uc002oor.2 AK022291 NM_024876 "CCDS12562|CCDS46081" Q96D53 24270420 MGI:1924139 RGD:1311356 615567 376599 objectId:1928 +HGNC:25302 COQ9 coenzyme Q9 protein-coding gene gene with protein product Approved 16q21 16q21 DKFZP434K046 C16orf49 "chromosome 16 open reading frame 49|coenzyme Q9 homolog (yeast)|coenzyme Q9 homolog (S. cerevisiae)" 2005-03-09 2006-01-13 2013-10-18 2016-10-05 57017 ENSG00000088682 OTTHUMG00000176582 uc002elq.4 BC064946 NM_020312 CCDS32459 O75208 19375058 MGI:1915164 RGD:1586040 COQ9 612837 201526 +HGNC:26515 COQ10A coenzyme Q10A protein-coding gene gene with protein product Approved 12q13.3 12q13.3 FLJ32452 "coenzyme Q10 homolog A (yeast)|coenzyme Q10 homolog A (S. cerevisiae)" 2006-01-13 2015-06-19 2015-06-19 93058 ENSG00000135469 OTTHUMG00000170283 uc001sko.5 AK057003 NM_144576 "CCDS41796|CCDS44921" Q96MF6 MGI:2684847 RGD:1562447 COQ10A +HGNC:25819 COQ10B coenzyme Q10B protein-coding gene gene with protein product Approved 2q33.1 02q33.1 FLJ13448 "coenzyme Q10 homolog B (yeast)|coenzyme Q10 homolog B (S. cerevisiae)" 2006-01-13 2015-06-19 2015-06-19 80219 ENSG00000115520 OTTHUMG00000132745 uc002uuh.2 AK023510 NM_025147 "CCDS2319|CCDS82551|CCDS82552" Q9H8M1 MGI:1915126 RGD:1359509 COQ10B +HGNC:44912 COQ10BP1 coenzyme Q10B pseudogene 1 pseudogene pseudogene Approved 10p12.1 10p12.1 coenzyme Q10 homolog B pseudogene 1 2012-12-18 2015-06-26 2015-06-26 100421150 NG_025419 PGOHUM00000238373 +HGNC:44913 COQ10BP2 coenzyme Q10B pseudogene 2 pseudogene pseudogene Approved 5q14.2 05q14.2 coenzyme Q10 homolog B pseudogene 2 2012-12-18 2015-06-26 2015-06-26 100421072 ENSG00000251552 OTTHUMG00000162567 NG_024606 PGOHUM00000235300 +HGNC:2245 CORD1 cone rod dystrophy 1 (autosomal dominant) phenotype phenotype only Approved 18q21.1-q21.3 18q21.1-q21.3 CORD 1987-09-11 2013-01-23 1319 1867279 600624 +HGNC:2247 CORD4 cone rod dystrophy 4 phenotype phenotype only Approved 17q 17q 1995-05-05 2011-02-11 1321 8508343 +HGNC:2251 CORD8 cone rod dystrophy 8 phenotype phenotype only Approved 1q12-q24 01q12-q24 2000-06-05 2001-06-25 54109 605549 +HGNC:48676 CORD17 cone rod dystrophy 17 (autosomal dominant) phenotype phenotype only Approved 10q26 10q26 2013-06-06 2013-06-06 101409267 22929024 615163 +HGNC:19012 CORIN corin, serine peptidase protein-coding gene gene with protein product Approved 4p12 04p12 "PRSC|CRN|ATC2|Lrp4|TMPRSS10" corin, serine protease Proteases, serine 738 2004-05-10 2005-08-17 2015-08-24 10699 ENSG00000145244 OTTHUMG00000099441 uc003gxm.5 AF133845 NM_006587 "CCDS3477|CCDS63958|CCDS75122" Q9Y5Q5 10329693 MGI:1349451 RGD:727887 CORIN 605236 434292 S01.019 +HGNC:2252 CORO1A coronin 1A protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "HCORO1|p57|coronin-1" Clabp TACO coronin, actin-binding protein, 1A "WD repeat domain containing|Coronins" "362|495" 1999-10-19 2016-01-15 2016-10-12 11151 ENSG00000102879 OTTHUMG00000132148 uc002dww.4 X89109 NM_007074 CCDS10673 P31146 9778037 MGI:1345961 RGD:620009 LRG_195|http://www.lrg-sequence.org/LRG/LRG_195 CORO1A 605000 179462 +HGNC:2253 CORO1B coronin 1B protein-coding gene gene with protein product Approved 11q13.2 11q13.2 coronin-2 coronin, actin-binding protein, 1B "WD repeat domain containing|Coronins" "362|495" 1999-10-19 2016-01-15 2016-10-05 57175 ENSG00000172725 OTTHUMG00000167775 uc001oll.3 AK000860 NM_020441 CCDS8164 Q9BR76 9778037 MGI:1345963 RGD:2382 CORO1B 609849 +HGNC:2254 CORO1C coronin 1C protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "coronin-3|HCRNN4" coronin, actin-binding protein, 1C "WD repeat domain containing|Coronins" "362|495" 1999-10-19 2016-01-15 2016-10-05 23603 ENSG00000110880 OTTHUMG00000169381 uc001tnj.6 BC002342 NM_014325 "CCDS9120|CCDS61236" Q9ULV4 "9778037|10461187" MGI:1345964 RGD:1564490 CORO1C 605269 +HGNC:2255 CORO2A coronin 2A protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "IR10|WDR2" "coronin 2A|coronin-like protein B|WD protein IR10|WD-repeat protein 2" coronin, actin-binding protein, 2A "WD repeat domain containing|Coronins" "362|495" 1998-03-02 2016-01-15 2016-10-05 7464 ENSG00000106789 OTTHUMG00000020340 uc004aym.4 U57057 NM_003389 CCDS6735 Q92828 8985118 MGI:1345966 RGD:1309719 CORO2A 602159 +HGNC:2256 CORO2B coronin 2B protein-coding gene gene with protein product Approved 15q23 15q23 "ClipinC|KIAA0925" "clipin C|coronin, actin-binding, 2B" coronin, actin-binding protein, 2B "WD repeat domain containing|Coronins" "362|495" 1999-10-19 2016-01-15 2016-10-05 10391 ENSG00000103647 OTTHUMG00000133288 uc059krt.1 AB010098 NM_006091 "CCDS53952|CCDS10229" Q9UQ03 "10224093|10231032" MGI:2444283 RGD:1561953 CORO2B 605002 +HGNC:21356 CORO6 coronin 6 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 FLJ14871 "WD repeat domain containing|Coronins" "362|495" 2004-10-13 2015-09-11 84940 ENSG00000167549 OTTHUMG00000132732 uc060dkh.1 AF193039 NM_032854 CCDS11252 Q6QEF8 MGI:2183448 RGD:708560 CORO6 +HGNC:26161 CORO7 coronin 7 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ22021 "WD repeat domain containing|Coronins" "362|495" 2004-10-13 2014-11-19 79585 ENSG00000262246 OTTHUMG00000129465 uc002cwh.5 AK097238 NM_024535 "CCDS10513|CCDS55982|CCDS58417" P57737 15327992 MGI:1926135 RGD:621591 CORO7 611668 +HGNC:44424 CORO7-PAM16 CORO7-PAM16 readthrough other readthrough Approved 16p13.3 16p13.3 2012-10-03 2012-10-08 100529144 ENSG00000103426 OTTHUMG00000177664 uc002cwf.4 NM_001201479 CCDS58418 MGI:1926135 +HGNC:2257 CORT cortistatin protein-coding gene gene with protein product Approved 1p36.22 01p36.22 MGC32686 prepro-cortistatin Endogenous ligands 542 1997-05-15 2016-04-25 1325 ENSG00000241563 OTTHUMG00000001906 uc001ari.5 AF013252 NM_001302 CCDS117 O00230 9205124 MGI:109538 RGD:2383 CORT 602784 +HGNC:18304 COTL1 coactosin like F-actin binding protein 1 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 CLP "coactosin-like 1 (Dictyostelium)|coactosin-like F-actin binding protein 1" 2002-07-22 2002-08-01 2016-03-17 2016-03-17 23406 ENSG00000103187 OTTHUMG00000137634 uc002fid.5 L54057 NM_021149 CCDS10947 Q14019 "10051563|9326934|16924104" MGI:1919292 RGD:1305498 COTL1 606748 +HGNC:2086 COTL1P1 coactosin-like F-actin binding protein 1 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 CLPSMCR "coactosin-like, Smith Magenis syndrome chromosome region|coactosin-like 1 (Dictyostelium) pseudogene 1|COTL1 pseudogene 1" 2000-01-20 2010-04-30 2015-04-07 2015-04-07 27170 ENSG00000229749 OTTHUMG00000059172 NG_001537 10615134 PGOHUM00000237243 +HGNC:24322 COTL1P2 coactosin-like F-actin binding protein 1 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 CLPSMCR "coactosin-like 1 (Dictyostelium) pseudogene 2|COTL1 pseudogene 2" 2004-02-05 2015-04-07 2015-04-07 347720 ENSG00000235323 OTTHUMG00000130733 NG_002773 11997339 PGOHUM00000237289 +HGNC:2265 COX4I1 cytochrome c oxidase subunit 4I1 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 COX4-1 COX4 "cytochrome c oxidase subunit IV|cytochrome c oxidase subunit IV isoform 1" Mitochondrial complex IV: cytochrome c oxidase subunits 643 2001-06-22 2001-12-07 2016-02-11 2016-02-11 1327 ENSG00000131143 OTTHUMG00000137649 uc059yaj.1 AF005889 NM_001861 "CCDS10955|CCDS82020" P13073 "2444497|2157630" MGI:88473 RGD:68374 COX4I1 123864 1.9.3.1 +HGNC:2266 COX4I1P1 cytochrome c oxidase subunit 4I1 pseudogene 1 pseudogene pseudogene Approved 14q23.2 14q23.2 "COX4P1|COX4L1" "cytochrome c oxidase subunit IV pseudogene 1|cytochrome c oxidase subunit IV isoform 1 pseudogene 1" 1986-01-01 2001-12-07 2016-02-11 2016-02-11 122867 ENSG00000258956 OTTHUMG00000171139 NG_017086 PGOHUM00000247822 +HGNC:38036 COX4I1P2 cytochrome c oxidase subunit 4I1 pseudogene 2 pseudogene pseudogene Approved 13q14.13 13q14.13 cytochrome c oxidase subunit IV isoform 1 pseudogene 2 2010-03-23 2016-02-11 2016-02-11 652170 ENSG00000228869 OTTHUMG00000016858 NG_011339 PGOHUM00000262205 +HGNC:16232 COX4I2 cytochrome c oxidase subunit 4I2 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "COXIV-2|COX4B|dJ857M17.2|COX4-2" cytochrome c oxidase subunit IV-like 2 COX4L2 "cytochrome c oxidase subunit IV isoform 2|cytochrome c oxidase subunit IV isoform 2 (lung)" Mitochondrial complex IV: cytochrome c oxidase subunits 643 2001-12-03 2016-02-11 2016-02-11 84701 ENSG00000131055 OTTHUMG00000032180 uc002wwj.2 AF257180 NM_032609 CCDS13187 Q96KJ9 "11311561|17937768" MGI:2135755 RGD:69422 COX4I2 607976 201488 +HGNC:2267 COX5A cytochrome c oxidase subunit 5A protein-coding gene gene with protein product Approved 15q24.2 15q24.2 cytochrome c oxidase subunit Va Mitochondrial complex IV: cytochrome c oxidase subunits 643 1998-12-11 2016-02-11 2016-10-05 9377 ENSG00000178741 OTTHUMG00000142825 uc002azi.5 M22760 NM_004255 CCDS10273 P20674 "10072584|2853101" MGI:88474 RGD:620607 COX5A 603773 1.9.3.1 +HGNC:2268 COX5AP1 cytochrome c oxidase subunit 5A pseudogene 1 pseudogene pseudogene Approved 14q22 14q22 cytochrome c oxidase subunit Va pseudogene 1 1998-12-11 2005-04-11 2016-02-11 2016-02-11 9385 AF042162 NG_001220 10072584 +HGNC:20005 COX5AP2 cytochrome c oxidase subunit 5A pseudogene 2 pseudogene pseudogene Approved 14q22.1 14q22.1 cytochrome c oxidase subunit Va pseudogene 2 2003-01-13 2016-02-11 2016-02-11 319087 ENSG00000258981 OTTHUMG00000171088 NG_002477 PGOHUM00000248170 +HGNC:2269 COX5B cytochrome c oxidase subunit 5B protein-coding gene gene with protein product Approved 2q11.2 02q11.2 cytochrome c oxidase subunit Vb Mitochondrial complex IV: cytochrome c oxidase subunits 643 1991-06-04 2016-02-11 2016-02-11 1329 ENSG00000135940 OTTHUMG00000130548 uc002sya.4 BC006229 NM_001862 CCDS2032 P10606 MGI:88475 RGD:620608 COX5B 123866 1.9.3.1 +HGNC:2270 COX5BP1 cytochrome c oxidase subunit 5B pseudogene 1 pseudogene pseudogene Approved 4q21.22 04q21.22 COX5BL1 "cytochrome c oxidase subunit Vb-like 1|cytochrome c oxidase subunit Vb pseudogene 1" 1991-06-06 2010-10-11 2016-02-11 2016-10-05 1330 ENSG00000248448 OTTHUMG00000160936 NG_003010 1646156 PGOHUM00000245610 +HGNC:2271 COX5BP2 cytochrome c oxidase subunit 5B pseudogene 2 pseudogene pseudogene Approved 6q23.3 06q23.3 COX5BL2 "cytochrome c oxidase subunit Vb-like 2|cytochrome c oxidase subunit Vb pseudogene 2" 1991-06-06 2010-10-11 2016-02-11 2016-02-11 1331 ENSG00000213111 OTTHUMG00000015638 NG_028814 PGOHUM00000243387 +HGNC:2272 COX5BP3 cytochrome c oxidase subunit 5B pseudogene 3 pseudogene pseudogene Approved 7q33 07q33 COX5BL3 "cytochrome c oxidase subunit Vb-like 3|cytochrome c oxidase subunit Vb pseudogene 3" 1991-06-06 2010-10-11 2016-02-11 2016-02-11 1332 ENSG00000235967 OTTHUMG00000155234 NG_028677 PGOHUM00000233001 +HGNC:2273 COX5BP4 cytochrome c oxidase subunit 5B pseudogene 4 pseudogene pseudogene Approved 11q14.1 11q14.1 COX5BL4 "cytochrome c oxidase subunit Vb-like 4|cytochrome c oxidase subunit Vb pseudogene 4" 1991-06-06 2010-10-11 2016-02-11 2016-02-11 1333 NG_028804 PGOHUM00000242385 +HGNC:2274 COX5BP5 cytochrome c oxidase subunit 5B pseudogene 5 pseudogene pseudogene Approved 12q13.12 12q13.12 COX5BL5 "cytochrome c oxidase subunit Vb-like 5|cytochrome c oxidase subunit Vb pseudogene 5" 1991-06-06 2010-10-11 2016-02-11 2016-02-11 100288440 NG_028197 PGOHUM00000239772 +HGNC:2275 COX5BP6 cytochrome c oxidase subunit 5B pseudogene 6 pseudogene pseudogene Approved 13q32.3 13q32.3 COX5BL6 "cytochrome c oxidase subunit Vb-like 6|cytochrome c oxidase subunit Vb pseudogene 6" 1991-06-06 2010-10-11 2016-02-11 2016-02-11 101234262 ENSG00000237082 OTTHUMG00000017290 NG_033121 PGOHUM00000248486 +HGNC:2276 COX5BP7 cytochrome c oxidase subunit 5B pseudogene 7 pseudogene pseudogene Approved 22q13.1 22q13.1 COX5BL7 "cytochrome c oxidase subunit Vb-like 7|cytochrome c oxidase subunit Vb pseudogene 7" 1991-06-06 2010-10-11 2016-02-11 2016-02-11 1336 ENSG00000226024 OTTHUMG00000151028 NG_002633 PGOHUM00000246333 +HGNC:39083 COX5BP8 cytochrome c oxidase subunit 5B pseudogene 8 pseudogene pseudogene Approved 1q25.2 01q25.2 cytochrome c oxidase subunit Vb pseudogene 8 2010-10-11 2016-02-11 2016-02-11 100859925 ENSG00000223794 OTTHUMG00000041099 NG_031947 PGOHUM00000245102 +HGNC:2277 COX6A1 cytochrome c oxidase subunit 6A1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 COX6A cytochrome c oxidase subunit VIa polypeptide 1 Mitochondrial complex IV: cytochrome c oxidase subunits 643 1990-06-11 2016-02-11 2016-10-05 1337 ENSG00000111775 OTTHUMG00000047791 uc001tyf.2 X15341 NM_004373 CCDS9197 P12074 9284905 MGI:103099 RGD:2384 COX6A1 602072 444671 1.9.3.1 +HGNC:2278 COX6A1P1 cytochrome c oxidase subunit 6A1 pseudogene 1 pseudogene pseudogene Approved 1p31.1 01p31.1 COX6A1P "cytochrome c oxidase subunit VIa polypeptide 1 pseudogene|cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 1" 1996-12-18 2009-11-25 2016-02-11 2016-02-11 1338 U82486 NG_001105 "9177785|9284905" +HGNC:35239 COX6A1P2 cytochrome c oxidase subunit 6A1 pseudogene 2 pseudogene pseudogene Approved 6p21.2 06p21.2 cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 2 2008-10-28 2016-02-11 2016-02-11 285849 ENSG00000226976 OTTHUMG00000014615 NG_004806 COX6A1P2 +HGNC:37633 COX6A1P3 cytochrome c oxidase subunit 6A1 pseudogene 3 pseudogene pseudogene Approved 6q22.31 06q22.31 cytochrome c oxidase subunit VIa polypeptide 1 pseudogene 3 2009-11-26 2016-02-11 2016-02-11 100287768 ENSG00000216710 OTTHUMG00000015473 NG_016160 PGOHUM00000243758 +HGNC:2279 COX6A2 cytochrome c oxidase subunit 6A2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 cytochrome c oxidase subunit VIa polypeptide 2 Mitochondrial complex IV: cytochrome c oxidase subunits 643 1994-01-15 2016-02-11 2016-10-05 1339 ENSG00000156885 OTTHUMG00000132463 uc002ebx.2 "U66875|M83308" NM_005205 CCDS10712 Q02221 "1327966|9177785" MGI:104649 RGD:2385 COX6A2 602009 1.9.3.1 +HGNC:2280 COX6B1 cytochrome c oxidase subunit 6B1 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 COXG COX6B "cytochrome c oxidase subunit Vib|cytochrome c oxidase subunit Vib polypeptide 1 (ubiquitous)|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous)" Mitochondrial complex IV: cytochrome c oxidase subunits 643 1991-09-11 2004-08-12 2016-02-11 2016-10-05 1340 ENSG00000126267 OTTHUMG00000048112 uc002oav.4 BC001015 NM_001863 CCDS12469 P14854 1650756 MGI:107460 RGD:1584097 COX6B1 124089 167892 1.9.3.1 +HGNC:2281 COX6B1P1 cytochrome c oxidase subunit 6B1 pseudogene 1 pseudogene pseudogene Approved 7q36.1 07q36.1 COX6BP1 "cytochrome c oxidase subunit VIb pseudogene 1 (HCOX52)|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 1" 1991-12-02 2010-01-07 2016-02-12 2016-02-12 140603 ENSG00000234565 OTTHUMG00000151504 M38259 NG_007348 "1651883|1651884" PGOHUM00000233640 +HGNC:2282 COX6B1P2 cytochrome c oxidase subunit 6B1 pseudogene 2 pseudogene pseudogene Approved 17q21.32 17q21.32 COX6BP2 "cytochrome c oxidase subunit VIb pseudogene 2|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 2" 1991-12-02 2010-01-07 2016-02-12 2016-02-12 1342 ENSG00000241788 OTTHUMG00000159901 M38260 NG_005205 "1651883|1651884" PGOHUM00000237426 +HGNC:2283 COX6B1P3 cytochrome c oxidase subunit 6B1 pseudogene 3 pseudogene pseudogene Approved 22q13.1 22q13.1 COX6BP3 "cytochrome c oxidase subunit VIb pseudogene 3|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 3" 1992-02-14 2010-01-07 2016-02-12 2016-10-05 1343 ENSG00000172912 OTTHUMG00000151144 M38261 NG_005206 1651884 PGOHUM00000246592 +HGNC:2284 COX6B1P4 cytochrome c oxidase subunit 6B1 pseudogene 4 pseudogene pseudogene Approved 8p21.2 08p21.2 COX6BP4 "cytochrome c oxidase subunit VIb pseudogene 4|cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 4" 1992-02-14 2010-01-07 2016-02-12 2016-02-12 100462850 ENSG00000253813 OTTHUMG00000163885 NG_026013 "1651883|1651884" PGOHUM00000263882 +HGNC:37675 COX6B1P5 cytochrome c oxidase subunit 6B1 pseudogene 5 pseudogene pseudogene Approved 4p16.3 04p16.3 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 5 2010-01-07 2016-02-12 2016-02-12 100289662 ENSG00000249047 OTTHUMG00000159816 NG_016561 PGOHUM00000263816 +HGNC:37676 COX6B1P6 cytochrome c oxidase subunit 6B1 pseudogene 6 pseudogene pseudogene Approved 8q21.3 08q21.3 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 6 2010-01-07 2016-02-12 2016-02-12 100462851 ENSG00000253349 OTTHUMG00000163810 NG_022396 PGOHUM00000263884 +HGNC:37677 COX6B1P7 cytochrome c oxidase subunit 6B1 pseudogene 7 pseudogene pseudogene Approved 1p31.3 01p31.3 cytochrome c oxidase subunit VIb polypeptide 1 (ubiquitous) pseudogene 7 2010-01-07 2016-02-12 2016-02-12 100133210 ENSG00000225242 OTTHUMG00000009209 NG_022782 PGOHUM00000244751 +HGNC:24380 COX6B2 cytochrome c oxidase subunit 6B2 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "COXVIB2|FLJ32865|CT59" "cytochrome c oxidase subunit VIb, testes specific|cancer/testis antigen 59" cytochrome c oxidase subunit VIb polypeptide 2 (testis) Mitochondrial complex IV: cytochrome c oxidase subunits 643 2004-08-11 2016-02-11 2016-02-11 125965 ENSG00000160471 OTTHUMG00000180774 uc061czx.1 AK057427 NM_144613 CCDS42630 Q6YFQ2 12874793 MGI:3044182 RGD:1591896 COX6B2 +HGNC:2285 COX6C cytochrome c oxidase subunit 6C protein-coding gene gene with protein product Approved 8q22.2 08q22.2 cytochrome c oxidase subunit VIc Mitochondrial complex IV: cytochrome c oxidase subunits 643 1989-05-08 2016-02-11 2016-02-11 1345 ENSG00000164919 OTTHUMG00000164703 uc003yiy.3 X13238 NM_004374 CCDS6284 P09669 10072584 MGI:104614 RGD:620616 COX6C 124090 1.9.3.1 +HGNC:2286 COX6CP1 cytochrome c oxidase subunit 6C pseudogene 1 pseudogene pseudogene Approved 16p13.13 16p13.13 cytochrome c oxidase subunit VIc pseudogene 1 1998-12-11 2016-02-12 2016-10-05 9384 ENSG00000260318 OTTHUMG00000172958 AF042163 NG_001219 10072584 PGOHUM00000293423 +HGNC:16600 COX6CP2 cytochrome c oxidase subunit 6C pseudogene 2 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ894K16.1 cytochrome c oxidase subunit VIc pseudogene 2 2001-09-17 2016-02-12 2016-07-22 170504 ENSG00000231715 OTTHUMG00000032722 AL034429 NG_001033 PGOHUM00000297138 +HGNC:31721 COX6CP3 cytochrome c oxidase subunit 6C pseudogene 3 pseudogene pseudogene Approved 18p11.32 18p11.32 cytochrome c oxidase subunit VIc pseudogene 3 2011-03-31 2016-02-12 2016-07-22 100130247 ENSG00000266251 OTTHUMG00000178369 NG_012734 PGOHUM00000294563 +HGNC:32374 COX6CP4 cytochrome c oxidase subunit 6C pseudogene 4 pseudogene pseudogene Approved 15q14 15q14 cytochrome c oxidase subunit VIc pseudogene 4 2005-11-03 2016-02-12 2016-07-22 100288892 ENSG00000270500 OTTHUMG00000184862 NG_012732 PGOHUM00000293214 +HGNC:42791 COX6CP5 cytochrome c oxidase subunit 6C pseudogene 5 pseudogene pseudogene Approved 11p15.4 11p15.4 cytochrome c oxidase subunit VIc pseudogene 5 2011-08-19 2016-02-12 2016-07-22 100862855 ENSG00000254642 OTTHUMG00000165674 NG_032147 PGOHUM00000290816 +HGNC:47037 COX6CP6 cytochrome c oxidase subunit 6C pseudogene 6 pseudogene pseudogene Approved 3p13 03p13 cytochrome c oxidase subunit VIc pseudogene 6 2013-04-04 2016-02-12 2016-07-22 100289131 ENSG00000240156 OTTHUMG00000158802 NG_012733 PGOHUM00000299462 +HGNC:49359 COX6CP7 cytochrome c oxidase subunit 6C pseudogene 7 pseudogene pseudogene Approved 19q13.33 19q13.33 cytochrome c oxidase subunit VIc pseudogene 7 2013-10-18 2016-02-12 2016-07-22 106480265 ENSG00000268681 OTTHUMG00000183168 NG_043986 PGOHUM00000295062 +HGNC:49360 COX6CP8 cytochrome c oxidase subunit 6C pseudogene 8 pseudogene pseudogene Approved 8q12.3 08q12.3 cytochrome c oxidase subunit VIc pseudogene 8 2013-10-18 2016-02-12 2016-07-22 106481680 ENSG00000253231 OTTHUMG00000164359 NG_043039 PGOHUM00000303573 +HGNC:49361 COX6CP9 cytochrome c oxidase subunit 6C pseudogene 9 pseudogene pseudogene Approved 4q21.1 04q21.1 cytochrome c oxidase subunit VIc pseudogene 9 2013-10-18 2016-02-12 2016-07-22 PGOHUM00000299891 +HGNC:49362 COX6CP10 cytochrome c oxidase subunit 6C pseudogene 10 pseudogene pseudogene Approved 3p22.3 03p22.3 cytochrome c oxidase subunit VIc pseudogene 10 2013-10-18 2016-02-12 2016-07-22 106481681 ENSG00000238008 OTTHUMG00000155866 NG_043049 PGOHUM00000299395 +HGNC:49363 COX6CP11 cytochrome c oxidase subunit 6C pseudogene 11 pseudogene pseudogene Approved 14q24.3 14q24.3 cytochrome c oxidase subunit VIc pseudogene 11 2013-10-18 2016-02-12 2016-07-22 106480266 ENSG00000258668 OTTHUMG00000171541 NG_045117 PGOHUM00000292417 +HGNC:49364 COX6CP12 cytochrome c oxidase subunit 6C pseudogene 12 pseudogene pseudogene Approved Xq13.1 Xq13.1 cytochrome c oxidase subunit VIc pseudogene 12 2013-10-18 2016-02-12 2016-07-22 106481682 ENSG00000234463 OTTHUMG00000021747 NG_043058 PGOHUM00000304680 +HGNC:49365 COX6CP13 cytochrome c oxidase subunit 6C pseudogene 13 pseudogene pseudogene Approved 1p31.3 01p31.3 cytochrome c oxidase subunit VIc pseudogene 13 2013-10-18 2016-02-12 2016-07-22 106480267 ENSG00000234144 OTTHUMG00000009068 NG_043997 PGOHUM00000295708 +HGNC:49366 COX6CP14 cytochrome c oxidase subunit 6C pseudogene 14 pseudogene pseudogene Approved 3p21.31 03p21.31 cytochrome c oxidase subunit VIc pseudogene 14 2013-10-18 2016-02-12 2016-07-22 106481683 ENSG00000239576 OTTHUMG00000158196 NG_043065 PGOHUM00000299435 +HGNC:49368 COX6CP15 cytochrome c oxidase subunit 6C pseudogene 15 pseudogene pseudogene Approved 10q22.3 10q22.3 cytochrome c oxidase subunit VIc pseudogene 15 2013-10-18 2016-02-12 2016-07-22 106480268 ENSG00000228092 OTTHUMG00000018540 NG_045680 PGOHUM00000289913 +HGNC:49367 COX6CP16 cytochrome c oxidase subunit 6C pseudogene 16 pseudogene pseudogene Approved 16q24.1 16q24.1 cytochrome c oxidase subunit VIc pseudogene 16 2013-10-18 2016-02-12 2016-07-22 106481965 ENSG00000270313 OTTHUMG00000184814 NG_043292 PGOHUM00000293671 +HGNC:49369 COX6CP17 cytochrome c oxidase subunit 6C pseudogene 17 pseudogene pseudogene Approved 10p14 10p14 cytochrome c oxidase subunit VIc pseudogene 17 2013-10-18 2016-02-12 2016-07-22 106480269 ENSG00000235141 OTTHUMG00000017629 NG_045683 PGOHUM00000289735 +HGNC:49370 COX6CP18 cytochrome c oxidase subunit 6C pseudogene 18 pseudogene pseudogene Approved 11p15.5 11p15.5 cytochrome c oxidase subunit VIc pseudogene 18 2013-10-18 2016-02-12 2016-07-22 106481684 ENSG00000236041 OTTHUMG00000009941 NG_045305 PGOHUM00000290777 +HGNC:2287 COX7A1 cytochrome c oxidase subunit 7A1 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 COX7AH COX7A cytochrome c oxidase subunit VIIa polypeptide 1 (muscle) Mitochondrial complex IV: cytochrome c oxidase subunits 643 1990-06-11 2016-02-11 2016-10-05 1346 ENSG00000161281 OTTHUMG00000048144 uc002odm.1 BC002757 NM_001864 CCDS12490 P24310 "1327965|2550906" MGI:1316714 RGD:6496527 COX7A1 123995 1.9.3.1 +HGNC:2288 COX7A2 cytochrome c oxidase subunit 7A2 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "COXVIIa-L|COX7AL" cytochrome c oxidase subunit VIIa polypeptide 2 (liver) Mitochondrial complex IV: cytochrome c oxidase subunits 643 1992-11-25 2016-02-11 2016-04-25 1347 ENSG00000112695 OTTHUMG00000015049 uc063ppv.1 X15822 NM_001865 CCDS34486 P14406 "1327965|9202412" MGI:1316715 RGD:68365 COX7A2 123996 1.9.3.1 +HGNC:2289 COX7A2L cytochrome c oxidase subunit 7A2 like protein-coding gene gene with protein product Approved 2p21 02p21 "EB1|COX7RP|COX7AR|SIG81" cytochrome c oxidase subunit VIIa polypeptide 2 like 2000-03-24 2016-02-11 2016-02-11 9167 ENSG00000115944 OTTHUMG00000128605 uc002rsl.4 AB007618 NM_004718 CCDS1808 O14548 9418891 MGI:106015 RGD:1306111 COX7A2L 605771 +HGNC:20006 COX7A2P1 cytochrome c oxidase subunit 7A2 pseudogene 1 pseudogene pseudogene Approved 14q24.1 14q24.1 "COX7A3P|COX7AP1" "cytochrome c oxidase subunit VIIa polypeptide 3 pseudogene|cytochrome c oxidase subunit VIIa pseudogene 1|cytochrome c oxidase subunit VIIa polypeptide 2 (liver) pseudogene 1" 2003-01-13 2010-01-07 2016-02-11 2016-02-11 319098 ENSG00000258626 OTTHUMG00000171755 NG_002479 PGOHUM00000250108 +HGNC:2290 COX7A2P2 cytochrome c oxidase subunit 7A2 pseudogene 2 pseudogene pseudogene Approved 4q22.3 04q22.3 COX7AL2 "COX7A3|COX7AP2" "cytochrome c oxidase subunit VIIa polypeptide 3 (liver)|cytochrome c oxidase subunit VIIa pseudogene 2|cytochrome c oxidase subunit VIIa polypeptide 2 (liver) pseudogene 2" 1993-01-29 2010-01-07 2016-02-11 2016-02-11 1348 ENSG00000236764 OTTHUMG00000160945 NG_004712 O60397 1327965 123997 PGOHUM00000246005 +HGNC:2291 COX7B cytochrome c oxidase subunit 7B protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 cytochrome c oxidase subunit VIIb Mitochondrial complex IV: cytochrome c oxidase subunits 643 1993-12-13 2016-02-11 2016-02-11 1349 ENSG00000131174 OTTHUMG00000022718 uc004ecu.2 Z14244 NM_001866 CCDS14437 P24311 8382530 MGI:1913392 RGD:727789 COX7B 300885 325017 +HGNC:24381 COX7B2 cytochrome c oxidase subunit 7B2 protein-coding gene gene with protein product Approved 4p12 04p12 cytochrome c oxidase subunit VIIb2 Mitochondrial complex IV: cytochrome c oxidase subunits 643 2005-01-10 2016-02-11 2016-02-11 170712 ENSG00000170516 OTTHUMG00000099423 uc003gxf.4 AF125109 NM_130902 CCDS3472 Q8TF08 15623157 MGI:1925424 RGD:2319120 COX7B2 609811 +HGNC:16529 COX7BP1 cytochrome c oxidase subunit 7B pseudogene 1 pseudogene pseudogene Approved 22q12.3 22q12.3 bK714B7.1 cytochrome c oxidase subunit VIIb pseudogene 1 2001-09-17 2016-02-11 2016-10-05 114657 ENSG00000243453 OTTHUMG00000155624 AF042164 NG_001300 PGOHUM00000246319 +HGNC:16601 COX7BP2 cytochrome c oxidase subunit 7B pseudogene 2 pseudogene pseudogene Approved 20q11.23 20q11.23 dJ901O8.2 cytochrome c oxidase subunit VIIb pseudogene 2 2001-09-17 2016-02-11 2016-02-11 140692 ENSG00000234274 OTTHUMG00000032365 NG_005370 PGOHUM00000247524 +HGNC:2292 COX7C cytochrome c oxidase subunit 7C protein-coding gene gene with protein product Approved 5q14.3 05q14.3 cytochrome c oxidase subunit VIIc Mitochondrial complex IV: cytochrome c oxidase subunits 643 1991-09-05 2016-02-11 2016-10-05 1350 ENSG00000127184 OTTHUMG00000119049 uc003kir.4 BC001005 NM_001867 CCDS4063 P15954 10072584 MGI:103226 RGD:2300145 COX7C 603774 1.9.3.1 +HGNC:2293 COX7CP1 cytochrome c oxidase subunit 7C pseudogene 1 pseudogene pseudogene Approved 13q14.2 13q14.2 cytochrome c oxidase subunit VIIc pseudogene 1 1998-12-11 2016-02-11 2016-02-11 9386 ENSG00000235957 OTTHUMG00000016912 AF042165 NG_001221 10072584 +HGNC:2294 COX8A cytochrome c oxidase subunit 8A protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "COX8-2|COX8L|VIII-L|COX|VIII" COX8 "cytochrome c oxidase subunit VIII|cytochrome c oxidase subunit VIIIA (ubiquitous)" Mitochondrial complex IV: cytochrome c oxidase subunits 643 1989-06-30 2004-03-24 2016-02-11 2016-02-11 1351 ENSG00000176340 OTTHUMG00000167785 uc001nye.3 J04823 NM_004074 CCDS8054 P10176 "2543673|2847943" MGI:105959 RGD:620638 COX8A 123870 456175 1.9.3.1 +HGNC:31395 COX8BP cytochrome c oxidase subunit 8B, pseudogene pseudogene pseudogene Approved 11p15.5 11p15.5 "COX8-1|COX8H" COX8B cytochrome c oxidase subunit VIIIB, pseudogene 2004-03-26 2011-03-31 2016-02-11 2016-02-11 404544 NG_003253 "12909344|12716970" MGI:105958 +HGNC:24382 COX8C cytochrome c oxidase subunit 8C protein-coding gene gene with protein product Approved 14q32.12 14q32.12 COX8-3 cytochrome c oxidase subunit VIII isoform 3 cytochrome c oxidase subunit VIIIC Mitochondrial complex IV: cytochrome c oxidase subunits 643 2004-03-24 2016-02-11 2016-10-05 341947 ENSG00000187581 OTTHUMG00000171279 uc001ybt.2 AY161004 NM_182971 CCDS9910 Q7Z4L0 12909344 MGI:1922733 RGD:727840 COX8C 616855 +HGNC:2260 COX10 COX10, heme A:farnesyltransferase cytochrome c oxidase assembly factor protein-coding gene gene with protein product Approved 17p12 17p12 "protoheme IX farnesyltransferase, mitochondrial|heme O synthase" "COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast)|cytochrome c oxidase assembly homolog 10 (yeast)" Mitochondrial respiratory chain complex assembly factors 645 1996-10-31 2016-07-01 2016-07-01 1352 ENSG00000006695 OTTHUMG00000058814 uc002gof.5 U09466 NM_001303 CCDS11166 Q12887 "9177788|12928484" MGI:1917633 RGD:1594623 COX10 602125 120774 2.5.1.- +HGNC:38873 COX10-AS1 COX10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p12 17p12 "COX10AS|COX10-AS" "COX10 antisense RNA (non-protein coding)|COX10 antisense RNA 1 (non-protein coding)" 2010-08-19 2010-11-25 2012-08-15 2013-05-22 100874058 ENSG00000236088 OTTHUMG00000058771 uc060bkg.1 NR_049718 +HGNC:2261 COX11 COX11, cytochrome c oxidase copper chaperone protein-coding gene gene with protein product Approved 17q22 17q22 COX11P "cytochrome c oxidase subunit 11|cytochrome c oxidase assembly protein COX11" "COX11 (yeast) homolog, cytochrome c oxidase assembly protein|cytochrome c oxidase assembly homolog 11 (yeast)" Mitochondrial respiratory chain complex assembly factors 645 1998-07-03 2016-07-01 2016-07-01 1353 ENSG00000166260 OTTHUMG00000177838 uc010wng.2 AF044321 NM_004375 "CCDS11583|CCDS58579|CCDS82162" Q9Y6N1 "9878253|15840172" MGI:1917052 RGD:9174727 COX11 603648 +HGNC:2262 COX11P1 COX11, cytochrome c oxidase copper chaperone pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 COX11P "COX11 homolog, cytochrome c oxidase assembly protein (yeast) pseudogene|COX11 pseudogene 1" 1998-07-03 2010-03-02 2016-07-01 2016-07-01 140468 ENSG00000231162 OTTHUMG00000014524 AF044322 NG_007347 9878253 PGOHUM00000301717 +HGNC:28216 COX14 COX14, cytochrome c oxidase assembly factor protein-coding gene gene with protein product Approved 12q13.12 12q13.12 MGC14288 C12orf62 "chromosome 12 open reading frame 62|COX14 cytochrome c oxidase assembly homolog (S. cerevisiae)" Mitochondrial respiratory chain complex assembly factors 645 2006-02-24 2012-02-23 2016-07-01 2016-07-01 84987 ENSG00000178449 OTTHUMG00000185635 uc001rwb.3 NM_032901 CCDS8800 Q96I36 "22243966|22356826" MGI:1913629 RGD:1598052 614478 291843 +HGNC:2263 COX15 COX15, cytochrome c oxidase assembly homolog protein-coding gene gene with protein product Approved 10q24.2 10q24.2 CEMCOX2 COX15 (yeast) homolog, cytochrome c oxidase assembly protein Mitochondrial respiratory chain complex assembly factors 645 1998-07-03 2016-07-01 2016-10-12 1355 ENSG00000014919 OTTHUMG00000018893 uc001kqb.5 AF044323 NM_078470 "CCDS7481|CCDS7482" Q7KZN9 9878253 MGI:1920112 RGD:1312043 LRG_406|http://www.lrg-sequence.org/LRG/LRG_406 COX15 603646 120776 +HGNC:20213 COX16 COX16, cytochrome c oxidase assembly homolog protein-coding gene gene with protein product Approved 14q24.2 14q24.2 HSPC203 C14orf112 "chromosome 14 open reading frame 112|COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)" 2003-01-15 2008-06-23 2016-07-01 2016-07-01 51241 ENSG00000133983 OTTHUMG00000171238 uc001xmb.3 AF151037 NM_016468 CCDS9802 Q9P0S2 "11042152|15596615" MGI:1913522 RGD:2311610 COX16 +HGNC:2264 COX17 COX17, cytochrome c oxidase copper chaperone protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "COX17 (yeast) homolog, cytochrome c oxidase assembly protein|COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)" Mitochondrial respiratory chain complex assembly factors 645 1999-12-14 2016-07-01 2016-07-01 10063 ENSG00000138495 OTTHUMG00000159433 uc003ecz.2 L77701 NM_005694 CCDS2993 Q14061 "9050918|21816817" MGI:1333806 RGD:620548 COX17 604813 +HGNC:24341 COX17P1 COX17, cytochrome c oxidase copper chaperone pseudogene 1 pseudogene pseudogene Approved 13q14.13 13q14.13 COX17P "COX17 cytochrome c oxidase assembly homolog (S. cerevisiae) pseudogene|cytochrome c oxidase assembly homolog 17 (yeast) pseudogene 1" 2007-07-31 2010-03-02 2016-07-01 2016-07-01 81993 ENSG00000205105 OTTHUMG00000016872 NG_001293 10982038 +HGNC:26801 COX18 COX18, cytochrome c oxidase assembly factor protein-coding gene gene with protein product Approved 4q13.3 04q13.3 FLJ38991 "COX18 cytochrome c oxidase assembly homolog (S. cerevisiae)|cytochrome c oxidase assembly homolog 18 (yeast)" Mitochondrial respiratory chain complex assembly factors 645 2006-05-15 2016-07-01 2016-07-01 285521 ENSG00000163626 OTTHUMG00000129917 uc003hgm.2 AY957564 NM_173827 "CCDS3554|CCDS75139" Q8N8Q8 "16212937|16911509" MGI:2448532 RGD:1559547 COX18 610428 +HGNC:28074 COX19 COX19, cytochrome c oxidase assembly factor protein-coding gene gene with protein product Approved 7p22.3 07p22.3 MGC104475 "COX19 cytochrome c oxidase assembly homolog (S. cerevisiae)|cytochrome c oxidase assembly homolog 19 (S. cerevisiae)" Mitochondrial respiratory chain complex assembly factors 645 2006-05-15 2016-07-01 2016-07-01 90639 ENSG00000240230 OTTHUMG00000151476 uc003sjp.2 AY957566 NM_001031617 CCDS34582 Q49B96 "15596615|16212937|23345593" MGI:1915283 RGD:1305631 COX19 610429 +HGNC:26970 COX20 COX20, cytochrome c oxidase assembly factor protein-coding gene gene with protein product Approved 1q44 01q44 FLJ43269 FAM36A "family with sequence similarity 36, member A|COX20 Cox2 chaperone homolog (S. cerevisiae)" Mitochondrial respiratory chain complex assembly factors 645 2004-04-16 2012-02-24 2016-07-01 2016-07-01 116228 ENSG00000203667 OTTHUMG00000040401 uc001iar.5 BC062419 NM_198076 "CCDS31080|CCDS81434" Q5RI15 "22356826|23125284" MGI:1913609 RGD:1309105 COX20 614698 326052 +HGNC:31435 COX20P1 COX20, cytochrome c oxidase assembly factor pseudogene 1 pseudogene pseudogene Approved 10q21.3 10q21.3 bA119F7.2 FAM36B "family with sequence similarity 36, member B (pseudogene)|COX20 cytochrome C oxidase assembly factor pseudogene 1" 2004-05-27 2012-02-24 2016-07-01 2016-08-15 100507102 ENSG00000213025 OTTHUMG00000018360 NG_029198 +HGNC:43772 COX20P2 COX20, cytochrome c oxidase assembly factor pseudogene 2 pseudogene pseudogene Approved 2q37.1 02q37.1 "COX20 cytochrome C oxidase assembly factor pseudogene 2|COX20 pseudogene 2" 2012-02-24 2016-07-01 2016-07-01 100289170 ENSG00000235013 OTTHUMG00000153827 NG_032776 PGOHUM00000241133 +HGNC:2295 CP ceruloplasmin protein-coding gene gene with protein product Approved 3q24-q25.1 03q24-q25.1 ferroxidase ceruloplasmin (ferroxidase) 1986-01-01 2016-06-02 2016-10-11 1356 ENSG00000047457 OTTHUMG00000159563 uc003ewy.6 M13536 NM_000096 CCDS3141 P00450 MGI:88476 RGD:2387 CP 117700 120778 1.16.3.1 +HGNC:2296 CPA1 carboxypeptidase A1 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 pancreatic carboxypeptidase A CPA carboxypeptidase A1 (pancreatic) Carboxypeptidases 1321 1986-01-01 2015-11-26 2016-10-05 1357 ENSG00000091704 OTTHUMG00000157826 uc003vpx.4 NM_001868 CCDS5820 P15085 MGI:88478 RGD:2388 CPA1 114850 405057 M14.001 objectId:1587 3.4.17.1 +HGNC:2297 CPA2 carboxypeptidase A2 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 carboxypeptidase A2 (pancreatic) Carboxypeptidases 1321 1990-06-13 2015-11-26 2016-10-05 1358 ENSG00000158516 OTTHUMG00000157019 uc003vpq.4 U19977 NM_001869 CCDS5817 P48052 "7896805|10860668" MGI:3617840 RGD:1305563 CPA2 600688 M14.002 objectId:1588 3.4.17.15 +HGNC:2298 CPA3 carboxypeptidase A3 protein-coding gene gene with protein product Approved 3q24 03q24 "mast cell carboxypeptidase A|tissue carboxypeptidase A" carboxypeptidase A3 (mast cell) Carboxypeptidases 1321 1990-06-13 2015-12-16 2015-12-16 1359 ENSG00000163751 OTTHUMG00000159526 uc003ewm.4 NM_001870 CCDS3138 P15088 MGI:88479 RGD:2390 CPA3 114851 M14.010 objectId:1589 3.4.17.1 +HGNC:15740 CPA4 carboxypeptidase A4 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 CPA3 carboxypeptidase A3 Carboxypeptidases 1321 2001-05-24 2016-10-12 51200 ENSG00000128510 OTTHUMG00000157825 uc003vpr.4 AF095719 NM_016352 "CCDS5818|CCDS55163" Q9UI42 "10383164|10860668" MGI:1919041 RGD:1563619 LRG_1038|http://www.lrg-sequence.org/LRG/LRG_1038 CPA4 607635 M14.017 objectId:1590 +HGNC:15722 CPA5 carboxypeptidase A5 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 Carboxypeptidases 1321 2001-05-25 2016-10-05 93979 ENSG00000158525 OTTHUMG00000157824 uc064hzi.1 AF384667 NM_001127441 "CCDS5819|CCDS47713" Q8WXQ8 11836249 MGI:1921899 RGD:1303098 CPA5 609561 M14.020 objectId:1591 +HGNC:17245 CPA6 carboxypeptidase A6 protein-coding gene gene with protein product Approved 8q13.2 08q13.2 CPAH Carboxypeptidases 1321 2002-05-29 2016-10-05 57094 ENSG00000165078 OTTHUMG00000164575 uc003xxq.5 AF221594 NM_020361 CCDS6200 Q8N4T0 11836249 MGI:3045348 RGD:1311764 CPA6 609562 120780 M14.018 objectId:1592 +HGNC:23228 CPAMD8 C3 and PZP like, alpha-2-macroglobulin domain containing 8 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "KIAA1283|VIP|K-CAP" C3 and PZP like, alpha-2-macroglobulin domain containing 1234 2004-04-30 2016-03-11 2016-10-05 27151 ENSG00000160111 OTTHUMG00000133549 uc002nfb.4 AY101765 NM_015692 CCDS42519 Q8IZJ3 10574462 CPAMD8 608841 +HGNC:30998 CPAT1 cerebral palsy, ataxic 1 phenotype phenotype only Approved 9p12-q12 09p12-q12 2003-12-22 2011-02-11 60502 10854109 605388 +HGNC:2299 CPB1 carboxypeptidase B1 protein-coding gene gene with protein product Approved 3q24 03q24 "pancreatic carboxypeptidase B|tissue carboxypeptidase B|protaminase" carboxypeptidase B1 (tissue) Carboxypeptidases 1321 1992-04-13 2015-12-16 2015-12-16 1360 ENSG00000153002 OTTHUMG00000159520 uc003ewl.4 AJ224866 NM_001871 CCDS33874 P15086 MGI:1923953 RGD:2391 CPB1 114852 M14.003 objectId:1593 3.4.17.2 +HGNC:2300 CPB2 carboxypeptidase B2 protein-coding gene gene with protein product Approved 13q14.13 13q14.13 "CPU|PCPB|TAFI" "thrombin-activatable fibrinolysis inhibitor|carboxypeptidase U|plasma carboxypeptidase B|carboxypeptidase R" "carboxypeptidase B2 (plasma, carboxypeptidase U)|carboxypeptidase B2 (plasma)" Carboxypeptidases 1321 1992-04-10 2015-12-16 2016-10-05 1361 ENSG00000080618 OTTHUMG00000016867 uc001vaw.4 M75106 NM_001872 "CCDS9401|CCDS73568" Q96IY4 "1939207|1427879" MGI:1891837 RGD:71035 CPB2 603101 M14.009 objectId:1594 +HGNC:39898 CPB2-AS1 CPB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.13 13q14.13 CPB2 antisense RNA 1 (non-protein coding) 2011-04-08 2012-08-15 2014-11-19 100509894 ENSG00000235903 OTTHUMG00000016865 uc058wwc.1 NR_046226 +HGNC:2301 CPD carboxypeptidase D protein-coding gene gene with protein product Approved 17q11.2 17q11.2 GP180 metallocarboxypeptidase D Carboxypeptidases 1321 1998-04-08 2015-09-11 1362 ENSG00000108582 OTTHUMG00000132797 uc002hfb.3 U65090 NM_001304 "CCDS11257|CCDS56025" O75976 "9628828|9355738" MGI:107265 RGD:2393 CPD 603102 XM14-001 objectId:1582 3.4.17.22 +HGNC:2303 CPE carboxypeptidase E protein-coding gene gene with protein product Approved 4q32.3 04q32.3 "carboxypeptidase H|enkephalin convertase|insulin granule-associated carboxypeptidase|cobalt-stimulated chromaffin granule carboxypeptidase" Carboxypeptidases 1321 1992-04-09 2015-09-11 1363 ENSG00000109472 OTTHUMG00000150252 uc003irg.5 X51405 NM_001873 CCDS3810 P16870 2334405 MGI:101932 RGD:2394 CPE 114855 objectId:1595 3.4.17.10 +HGNC:21744 CPEB1 cytoplasmic polyadenylation element binding protein 1 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "FLJ13203|CPEB" 2003-07-22 2016-10-05 64506 ENSG00000214575 OTTHUMG00000172877 uc002biv.5 AF329402 NM_030594 "CCDS42072|CCDS45329|CCDS45330" Q9BZB8 11223249 MGI:108442 RGD:1310421 CPEB1 607342 +HGNC:27523 CPEB1-AS1 CPEB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q25.2 15q25.2 2014-11-21 2014-11-21 283692 ENSG00000259462 OTTHUMG00000172386 BC035360 NR_046096 +HGNC:21745 CPEB2 cytoplasmic polyadenylation element binding protein 2 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 RNA binding motif containing 725 2003-07-22 2016-10-05 132864 ENSG00000137449 OTTHUMG00000090669 uc003gnk.2 AY247744 XM_059607 "CCDS56325|CCDS56326" Q7Z5Q1 12672660 MGI:2442640 RGD:1307485 CPEB2 610605 +HGNC:49082 CPEB2-AS1 CPEB2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4p15.33-p15.32 04p15.33-p15.32 2013-08-23 2016-10-11 441009 ENSG00000247624 OTTHUMG00000160381 NR_038857 +HGNC:21746 CPEB3 cytoplasmic polyadenylation element binding protein 3 protein-coding gene gene with protein product Approved 10q23.32 10q23.32 KIAA0940 RNA binding motif containing 725 2003-07-22 2016-10-05 22849 ENSG00000107864 OTTHUMG00000018756 uc001khw.3 AB023157 NM_014912 "CCDS31246|CCDS53553" Q8NE35 "10231032|12672660" MGI:2443075 RGD:1564670 CPEB3 610606 +HGNC:21747 CPEB4 cytoplasmic polyadenylation element binding protein 4 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 KIAA1673 RNA binding motif containing 725 2003-07-22 2016-10-05 80315 ENSG00000113742 OTTHUMG00000130541 uc003mcs.5 BX538213 NM_030627 "CCDS4390|CCDS78086|CCDS78087|CCDS83043|CCDS83044" Q17RY0 "11214970|12672660" MGI:1914829 RGD:1311931 CPEB4 610607 +HGNC:26159 CPED1 cadherin like and PC-esterase domain containing 1 protein-coding gene gene with protein product Approved 7q31.31 07q31.31 FLJ21986 C7orf58 "chromosome 7 open reading frame 58|cadherin-like and PC-esterase domain containing 1" 2007-12-06 2012-06-12 2016-02-03 2016-02-03 79974 ENSG00000106034 OTTHUMG00000156982 uc003vjq.5 NM_024913 "CCDS34739|CCDS47690" A4D0V7 20056006 MGI:2444814 RGD:1563491 CPED1 +HGNC:31714 CPHL1P ceruloplasmin and hephaestin-like 1 pseudogene pseudogene pseudogene Approved 3q25.1 03q25.1 CPHL1 ceruloplasmin and hephaestin-like 1 2004-11-19 2010-10-13 2010-10-13 2010-10-13 389160 ENSG00000240216 OTTHUMG00000159584 NG_022938 PGOHUM00000237811 +HGNC:51815 CPHXL cytoplasmic polyadenylated homeobox like other unknown Approved 16q23.1 16q23.1 2015-06-11 2015-06-11 105371346 21110847 +HGNC:2308 CPL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-07-01 +HGNC:2309 CPLX1 complexin 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 CPX-I 1999-09-09 2015-08-28 10815 ENSG00000168993 OTTHUMG00000160005 uc003gbi.4 AF022383 NM_006651 CCDS46995 O14810 7553862 MGI:104727 RGD:70944 CPLX1 605032 +HGNC:2310 CPLX2 complexin 2 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "CPX-2|DKFZp547D155" 1999-09-09 2015-08-28 10814 ENSG00000145920 OTTHUMG00000130665 uc003mde.2 U35100 XM_017008964 CCDS4396 Q6PUV4 "7553862|16162394" MGI:104726 RGD:70945 CPLX2 605033 +HGNC:27652 CPLX3 complexin 3 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 CPX-III 2005-08-02 2015-08-24 594855 ENSG00000213578 OTTHUMG00000142816 uc059llo.1 BC018026 NM_001030005 CCDS32294 Q8WVH0 15911881 MGI:2384571 RGD:1560104 CPLX3 609585 +HGNC:24330 CPLX4 complexin 4 protein-coding gene gene with protein product Approved 18q21.32 18q21.32 CPX-IV 2004-01-22 2015-08-24 339302 ENSG00000166569 OTTHUMG00000132756 uc002lhy.4 AY286502 NM_181654 CCDS11973 Q7Z7G2 15911881 MGI:2685803 RGD:1307643 CPLX4 609586 +HGNC:2311 CPM carboxypeptidase M protein-coding gene gene with protein product Approved 12q15 12q15 "renal carboxypeptidase|urinary carboxypeptidase B" Carboxypeptidases 1321 1995-09-11 2015-09-11 1368 ENSG00000135678 OTTHUMG00000169300 uc001sur.4 AF368463 NM_198320 CCDS8987 P14384 8586455 MGI:1917824 RGD:1310532 CPM 114860 M14.006 objectId:1596 3.4.17.12 +HGNC:2312 CPN1 carboxypeptidase N subunit 1 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "anaphylatoxin inactivator|arginine carboxypeptidase|carboxypeptidase K|kininase I|lysine carboxypeptidase" "carboxypeptidase N, polypeptide 1, 50kD|carboxypeptidase N, polypeptide 1" Carboxypeptidases 1321 1998-04-08 2015-12-16 2015-12-16 1369 ENSG00000120054 OTTHUMG00000018896 uc001kql.3 X14329 NM_001308 CCDS7486 P15169 "9628828|2912725" MGI:2135874 RGD:70931 CPN1 603103 M14.004 objectId:1597 3.4.17.3 +HGNC:2313 CPN2 carboxypeptidase N subunit 2 protein-coding gene gene with protein product Approved 3q29 03q29 ACBP "carboxypeptidase N, polypeptide 2, 83kD|carboxypeptidase N, polypeptide 2" Carboxypeptidases 1321 1991-08-07 2015-12-16 2015-12-16 1370 ENSG00000178772 OTTHUMG00000156047 uc003fts.3 J05158 NM_001080513 CCDS33920 P22792 "2378615|9628828" MGI:1919006 RGD:1305170 CPN2 603104 objectId:1598 3.4.17.3 +HGNC:2314 CPNE1 copine 1 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 CPN1 copine I Copines 829 1999-02-09 2016-01-26 2016-01-26 8904 ENSG00000214078 OTTHUMG00000032356 uc002xdf.4 U83246 NM_152930 "CCDS13260|CCDS46595" Q99829 9430674 MGI:2386621 RGD:6495669 CPNE1 604205 +HGNC:2315 CPNE2 copine 2 protein-coding gene gene with protein product Approved 16q13 16q13 CPN2 copine II Copines 829 1999-02-09 2016-01-26 2016-01-26 221184 ENSG00000140848 OTTHUMG00000133471 uc002eks.3 NM_152727 CCDS10774 Q96FN4 9430674 MGI:2387578 RGD:1586036 CPNE2 604206 +HGNC:2316 CPNE3 copine 3 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 copine III Copines 829 1999-02-09 2016-01-26 2016-10-05 8895 ENSG00000085719 OTTHUMG00000163725 uc064ofn.1 AB014536 XM_017013945 CCDS6243 O75131 9430674 MGI:1917818 RGD:1310178 CPNE3 604207 +HGNC:2317 CPNE4 copine 4 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "COPN4|CPN4" copine 8 copine IV Copines 829 1999-02-09 2016-01-26 2016-01-26 131034 ENSG00000196353 OTTHUMG00000159631 uc003eom.5 H29499 NM_130808 "CCDS3072|CCDS75010" Q96A23 "9430674|12670487" MGI:1921270 RGD:1308844 CPNE4 604208 +HGNC:2318 CPNE5 copine 5 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "CPN5|COPN5|KIAA1599" copine V Copines 829 1999-02-09 2016-01-26 2016-01-26 57699 ENSG00000124772 OTTHUMG00000014602 uc003omr.2 H09181 NM_020939 "CCDS4825|CCDS83078" Q9HCH3 9430674 MGI:2385908 RGD:1308021 CPNE5 604209 +HGNC:2319 CPNE6 copine 6 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 copine VI (neuronal) Copines 829 1999-03-24 2016-01-26 2016-01-26 9362 ENSG00000100884 OTTHUMG00000028781 uc058zuk.1 AB009288 NM_001280558 "CCDS9607|CCDS61413" O95741 9645480 MGI:1334445 RGD:1583895 CPNE6 605688 +HGNC:2320 CPNE7 copine 7 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 copine VII Copines 829 1999-12-07 2016-01-26 2016-01-26 27132 ENSG00000178773 OTTHUMG00000138051 uc002fnq.4 AJ133798 XM_017023138 "CCDS10980|CCDS10981" Q9UBL6 MGI:2142747 RGD:1307466 CPNE7 605689 +HGNC:23498 CPNE8 copine 8 protein-coding gene gene with protein product Approved 12q12 12q12 copine VIII Copines 829 2003-11-20 2016-01-26 2016-01-26 144402 ENSG00000139117 OTTHUMG00000169396 uc001rls.2 AY177785 NM_153634 CCDS8733 Q86YQ8 12670487 MGI:1914121 RGD:1307939 CPNE8 +HGNC:24336 CPNE9 copine family member 9 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 KIAA4217 copine family member IX Copines 829 2006-01-06 2016-01-26 2016-01-26 151835 ENSG00000144550 OTTHUMG00000128418 uc062gli.1 NM_001033755 "CCDS2574|CCDS77695" Q8IYJ1 9430674 MGI:2443052 RGD:1309212 CPNE9 +HGNC:21011 CPO carboxypeptidase O protein-coding gene gene with protein product Approved 2q33.3 02q33.3 "metallocarboxypeptidase O|metallocarboxypeptidase C" Carboxypeptidases 1321 2004-01-29 2016-10-05 130749 ENSG00000144410 OTTHUMG00000088987 uc002vby.2 NM_173077 CCDS2372 Q8IVL8 11836249 RGD:1588771 CPO 609563 M14.021 objectId:1599 +HGNC:2321 CPOX coproporphyrinogen oxidase protein-coding gene gene with protein product Approved 3q12 03q12 "CPX|HCP" coproporphyria CPO coproporphyrinogen oxidase (coproporphyria, harderoporphyria) 2001-06-22 2004-01-30 2016-10-12 1371 ENSG00000080819 OTTHUMG00000160016 uc003dsx.4 BC017210 NM_000097 CCDS2932 P36551 "7757079|8407975" MGI:104841 RGD:1311817 LRG_1077|http://www.lrg-sequence.org/LRG/LRG_1077 CPOX 612732 120783 1.3.3.3 +HGNC:2322 CPP ceruloplasmin pseudogene pseudogene pseudogene Approved 8q21.13-q23.1 08q21.13-q23.1 ceruloplasmin (ferroxidase) pseudogene 2001-06-22 2016-06-27 2016-06-27 340451 M18058 NG_001106 3427102 +HGNC:25632 CPPED1 calcineurin like phosphoesterase domain containing 1 protein-coding gene gene with protein product Approved 16p13.12 16p13.12 "CSTP1|FLJ11151" complete S transactivated protein 1 calcineurin-like phosphoesterase domain containing 1 2009-03-13 2016-03-17 2016-03-17 55313 ENSG00000103381 OTTHUMG00000167711 uc002dca.5 AK022710 NM_018340 "CCDS42119|CCDS42120" Q9BRF8 12477932 MGI:2443300 RGD:1306568 CPPED1 615603 +HGNC:16910 CPQ carboxypeptidase Q protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "LDP|PGCP" "lysosomal dipeptidase|Ser-Met dipeptidase|plasma glutamate carboxypeptidase" Carboxypeptidases 1321 2012-02-17 2016-10-05 10404 ENSG00000104324 OTTHUMG00000164690 uc003yhw.5 AF107834 NM_016134 CCDS6273 Q9Y646 10206990 MGI:1889205 RGD:628610 objectId:1610 +HGNC:2323 CPS1 carbamoyl-phosphate synthase 1 protein-coding gene gene with protein product Approved 2q34 02q34 carbamoyl-phosphate synthase (ammonia) "carbamoyl-phosphate synthetase 1, mitochondrial|carbamoyl-phosphate synthase 1, mitochondrial" 2001-06-22 2015-11-12 2016-10-12 1373 ENSG00000021826 OTTHUMG00000132994 uc002vee.5 AF154830 NM_001122633 "CCDS2393|CCDS46505|CCDS46506" P31327 MGI:891996 RGD:2395 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=CPS1|LRG_336|http://www.lrg-sequence.org/LRG/LRG_336" CPS1 608307 120788 6.3.4.16 +HGNC:30102 CPS1-IT1 CPS1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q34 02q34 "PRO0132|CPS1-IT" CPS1IT CPS1 intronic transcript 1 (non-protein coding) 2010-07-08 2011-03-23 2015-02-25 2015-02-25 29034 ENSG00000280837 OTTHUMG00000189581 uc002vef.4 NR_002763 12477932 +HGNC:2324 CPSF1 cleavage and polyadenylation specific factor 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "cleavage and polyadenylation specific factor 1, 160kD subunit|cleavage and polyadenylation specific factor 1, 160kDa" 2000-05-31 2015-11-09 2016-10-05 29894 ENSG00000071894 OTTHUMG00000174612 uc003zcj.3 U37012 NM_013291 CCDS34966 Q10570 "7651824|7590244" MGI:2679722 RGD:1306406 CPSF1 606027 +HGNC:19251 CPSF1P1 cleavage and polyadenylation specific factor 1 pseudogene 1 pseudogene pseudogene Approved 22q12.3 22q12.3 dJ90G24.5 cleavage and polyadenylation specific factor 1, 160kDa pseudogene 1 2002-09-18 2015-11-10 2016-10-05 129099 ENSG00000214076 OTTHUMG00000030378 NG_005204 PGOHUM00000246572 +HGNC:2325 CPSF2 cleavage and polyadenylation specific factor 2 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 KIAA1367 "cleavage and polyadenylation specific factor 2, 100kD subunit|cleavage and polyadenylation specific factor 2, 100kDa" 2000-05-31 2015-11-09 2016-10-05 53981 ENSG00000165934 OTTHUMG00000171181 uc001yah.3 AB037788 NM_001322270 CCDS9902 Q9P2I0 "7969155|11124543" MGI:1861601 RGD:1309687 CPSF2 606028 +HGNC:2326 CPSF3 cleavage and polyadenylation specific factor 3 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "CPSF-73|CPSF73|YSH1" "cleavage and polyadenylation specific factor 3, 73kD subunit|cleavage and polyadenylation specific factor 3, 73kDa" 2000-05-31 2015-11-09 2015-11-09 51692 ENSG00000119203 OTTHUMG00000090415 uc002qzo.3 AF171877 NM_016207 "CCDS1664|CCDS82417" Q9UKF6 8929409 MGI:1859328 RGD:1305767 CPSF3 606029 +HGNC:26052 CPSF3L cleavage and polyadenylation specific factor 3-like protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "FLJ20542|RC-68|CPSF73L|INT11|INTS11" integrator complex subunit 11 2005-05-19 2014-11-19 54973 ENSG00000127054 OTTHUMG00000003330 uc001aee.3 AL136813 NM_017871 "CCDS21|CCDS57959|CCDS57960|CCDS57961|CCDS72678" Q5TA45 "15684398|16239144" MGI:1919207 RGD:1306841 CPSF3L 611354 +HGNC:2327 CPSF4 cleavage and polyadenylation specific factor 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "NAR|CPSF30" "cleavage and polyadenylation specific factor 4, 30kD subunit|cleavage and polyadenylation specific factor 4, 30kDa" 2000-05-31 2015-11-09 2016-10-05 10898 ENSG00000160917 OTTHUMG00000154599 uc003uqj.4 XM_011515755 "CCDS5664|CCDS47652|CCDS83205" O95639 "9651582|9224719" MGI:1861602 RGD:620440 CPSF4 603052 +HGNC:33632 CPSF4L cleavage and polyadenylation specific factor 4 like protein-coding gene gene with protein product Approved 17q25.1 17q25.1 2007-10-18 2016-06-21 2016-06-21 642843 ENSG00000187959 OTTHUMG00000132640 uc010dfk.1 NM_001129885 CCDS45768 A6NMK7 MGI:1277182 RGD:1306397 CPSF4L +HGNC:13871 CPSF6 cleavage and polyadenylation specific factor 6 protein-coding gene gene with protein product Approved 12q15 12q15 "CFIM|HPBRII-4|HPBRII-7|CFIM68" cleavage factor Im complex 68 kDa subunit "cleavage and polyadenylation specific factor 6, 68kD subunit|cleavage and polyadenylation specific factor 6, 68kDa" RNA binding motif containing 725 2001-02-06 2015-11-09 2015-11-09 11052 ENSG00000111605 OTTHUMG00000169340 uc001sut.4 X67336 NM_007007 "CCDS8988|CCDS73494" Q16630 "9659921|17267687" MGI:1913948 RGD:1304640 CPSF6 604979 +HGNC:30098 CPSF7 cleavage and polyadenylation specific factor 7 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 FLJ12529 "pre mRNA cleavage factor I, 59 kDa subunit|cleavage factor Im complex 59 kDa subunit" cleavage and polyadenylation specific factor 7, 59kDa RNA binding motif containing 725 2009-04-21 2015-11-09 2015-11-09 79869 ENSG00000149532 OTTHUMG00000168198 uc001nrq.4 NM_024811 "CCDS8006|CCDS44619|CCDS44620" Q8N684 12477932 MGI:1917826 RGD:1305441 CPSF7 +HGNC:2328 CPT1A carnitine palmitoyltransferase 1A protein-coding gene gene with protein product Approved 11q13.3 11q13.3 "CPT1-L|L-CPT1" CPT1 carnitine palmitoyltransferase 1A (liver) 1995-05-30 2016-02-24 2016-10-05 1374 ENSG00000110090 OTTHUMG00000167892 uc001oog.5 L39211 NM_001876 "CCDS8185|CCDS31624" P50416 "7892212|9070950" MGI:1098296 RGD:2396 CPT1A 600528 120790 2.3.1.21 +HGNC:2329 CPT1B carnitine palmitoyltransferase 1B protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "M-CPT1|CPT1-M" carnitine O-palmitoyltransferase 1B carnitine palmitoyltransferase 1B (muscle) 1996-08-14 2015-12-04 2015-12-04 1375 ENSG00000205560 OTTHUMG00000137390 uc003bml.4 U62733 NM_152246 "CCDS14098|CCDS46734" Q92523 9070950 MGI:1098297 RGD:2397 CPT1B 601987 2.3.1.21 +HGNC:18540 CPT1C carnitine palmitoyltransferase 1C protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "FLJ23809|CPTIC|CPT1P" 2003-11-27 2015-09-11 126129 ENSG00000169169 OTTHUMG00000183267 uc002ppj.4 AF357970 NM_152359 "CCDS12779|CCDS46147" Q8TCG5 "12376098|11001805" MGI:2446526 RGD:1305384 CPT1C 608846 448705 +HGNC:2330 CPT2 carnitine palmitoyltransferase 2 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 CPTASE CPT1 carnitine palmitoyltransferase II 1991-05-09 2009-03-04 2015-08-24 1376 ENSG00000157184 OTTHUMG00000008942 uc001cvb.4 BC002445 NM_000098 "CCDS575|CCDS81326" P23786 1339389 MGI:109176 RGD:2398 CPT2 600650 120795 2.3.1.21 +HGNC:49538 CPT2P1 carnitine palmitoyltransferase 2 pseudogene 1 pseudogene pseudogene Approved 1p32.3 01p32.3 2014-01-09 2014-01-09 100420556 NG_027096 PGOHUM00000244726 +HGNC:28116 CPTP ceramide-1-phosphate transfer protein protein-coding gene gene with protein product Approved 1p36.33 01p36.33 MGC10334 GLTPD1 glycolipid transfer protein domain containing 1 2007-12-19 2014-06-23 2014-06-23 2014-11-19 80772 ENSG00000224051 OTTHUMG00000003171 BC004366 NM_001029885 CCDS30555 Q5TA50 23863933 MGI:1933107 RGD:1359656 615467 +HGNC:14399 CPVL carboxypeptidase, vitellogenic like protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "carboxypeptidase WUG|vitellogenic carboxypeptidase-like protein|CP-Mac carboxypeptidase" carboxypeptidase, vitellogenic-like Carboxypeptidases 1321 2001-01-12 2016-02-03 2016-10-05 54504 ENSG00000106066 OTTHUMG00000023669 uc003szx.4 AF106704 NM_019029 CCDS5419 Q9H3G5 11401439 MGI:1918537 RGD:1563609 CPVL 609780 S10.003 objectId:1583 +HGNC:2332 CPXCR1 CPX chromosome region, candidate 1 protein-coding gene gene with protein product Approved Xq21.31 Xq21.31 CT77 cancer/testis antigen 77 2000-05-02 2016-10-05 53336 ENSG00000147183 OTTHUMG00000021950 uc004efd.5 AL031116 NM_033048 CCDS14458 Q8N123 11499681 MGI:2685989 RGD:2321886 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CPXCR1 CPXCR1 +HGNC:15771 CPXM1 carboxypeptidase X, M14 family member 1 protein-coding gene gene with protein product Approved 20p13 20p13 "CPX-1|CPX1" carboxypeptidase-like protein X1 CPXM carboxypeptidase X (M14 family), member 1 Carboxypeptidases 1321 2001-09-17 2006-08-24 2016-07-20 2016-07-20 56265 ENSG00000088882 OTTHUMG00000031706 uc002wgu.4 AL035460 NM_019609 CCDS13033 Q96SM3 "14702039|26603934" MGI:1934569 RGD:1306937 CPXM1 609555 M14.952 objectId:1600 +HGNC:26977 CPXM2 carboxypeptidase X, M14 family member 2 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "UNQ676|CPX2" cytosolic carboxypeptidase carboxypeptidase X (M14 family), member 2 Carboxypeptidases 1321 2004-07-21 2016-07-20 2016-10-05 119587 ENSG00000121898 OTTHUMG00000019206 uc001lhk.2 AY358565 NM_198148 CCDS7637 Q8N436 12975309 MGI:1926006 RGD:1310955 CPXM2 M14.036 objectId:1601 +HGNC:2333 CPZ carboxypeptidase Z protein-coding gene gene with protein product Approved 4p16.1 04p16.1 metallocarboxypeptidase Z Carboxypeptidases 1321 1998-10-16 2015-09-11 8532 ENSG00000109625 OTTHUMG00000090513 uc003glo.4 U83411 NM_003652 "CCDS3404|CCDS33953|CCDS43212" Q66K79 9099699 MGI:88487 RGD:620496 CPZ 603105 M14.012 objectId:1602 +HGNC:2334 CR1 complement C3b/C4b receptor 1 (Knops blood group) protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "CD35|KN" "complement component (3b/4b) receptor 1, including Knops blood group system|complement component (3b/4b) receptor 1 (Knops blood group)|complement component 3b/4b receptor 1 (Knops blood group)" "Blood group antigens|CD molecules|Complement system|Sushi domain containing" "454|471|492|1179" 2001-06-22 2016-08-10 2016-10-12 1378 ENSG00000203710 OTTHUMG00000036311 uc001hfx.4 Y00816 NM_000573 "CCDS44308|CCDS44309" P17927 1708809 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_814|http://www.lrg-sequence.org/LRG/LRG_814" CR1 120620 CD35 +HGNC:2335 CR1L complement C3b/C4b receptor 1 like protein-coding gene gene with protein product Approved 1q32.2 01q32.2 complement component (3b/4b) receptor 1-like "Complement system|Sushi domain containing" "492|1179" 1989-04-24 2016-08-10 2016-10-05 1379 ENSG00000197721 OTTHUMG00000036354 uc001hga.5 AY114160 XM_114735 CCDS44310 Q2VPA4 2295627 MGI:88513 RGD:2399 CR1L 605886 +HGNC:2336 CR2 complement C3d receptor 2 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "CD21|C3DR" Epstein-Barr virus receptor "complement component (3d/Epstein Barr virus) receptor 2|complement component 3d receptor 2" "CD molecules|Complement system|Sushi domain containing" "471|492|1179" 2001-06-22 2016-08-10 2016-10-12 1380 ENSG00000117322 OTTHUMG00000036307 uc001hfv.4 M26004 NM_001877 "CCDS1478|CCDS31007" P20023 MGI:88489 RGD:1310065 LRG_348|http://www.lrg-sequence.org/LRG/LRG_348 CR2 120650 160142 CD21 +HGNC:2338 CRABP1 cellular retinoic acid binding protein 1 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "CRABP|CRABP-I|CRABPI" RBP5 cellular retinoic acid-binding protein 1 Fatty acid binding protein family 550 1989-06-30 2001-11-28 2016-10-05 1381 ENSG00000166426 OTTHUMG00000143862 uc002bdp.2 NM_004378 CCDS10301 P29762 9154115 MGI:88490 RGD:2400 CRABP1 180230 objectId:2529 +HGNC:2339 CRABP2 cellular retinoic acid binding protein 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 CRABP-II cellular retinoic acid-binding protein 2 Fatty acid binding protein family 550 1992-11-25 2001-11-28 2016-10-05 1382 ENSG00000143320 OTTHUMG00000041300 uc021pbi.2 BC001109 NM_001878 CCDS1152 P29373 1654334 MGI:88491 RGD:62070 CRABP2 180231 objectId:2530 +HGNC:28657 CRACR2A calcium release activated channel regulator 2A protein-coding gene gene with protein product Approved 12p13.32 12p13.32 MGC4266 "Ca2+ release-activated Ca2+ (CRAC) channel regulator 2A|CRAC regulator 2A" EFCAB4B EF-hand calcium binding domain 4B EF-hand domain containing 863 2006-03-21 2014-07-02 2014-07-02 2015-08-24 84766 ENSG00000130038 BC004524 NM_032680 "CCDS8522|CCDS44803" Q9BSW2 20418871 MGI:2685919 RGD:1563719 614178 +HGNC:28703 CRACR2B calcium release activated channel regulator 2B protein-coding gene gene with protein product Approved 11p15.5 11p15.5 MGC45840 "Ca2+ release-activated Ca2+ (CRAC) channel regulator 2B|CRAC regulator 2B" EFCAB4A EF-hand calcium binding domain 4A EF-hand domain containing 863 2006-03-21 2014-07-02 2014-07-02 2014-11-19 283229 ENSG00000177685 BC073821 NM_173584 "CCDS41588|CCDS65995" Q8N4Y2 20418871 MGI:2446129 RGD:1560911 614177 +HGNC:2340 CRADD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding gene gene with protein product Approved 12q22 12q22 RAIDD RIP-associated ICH1/CED3-homologous protein with death domain Caspase recruitment domain containing 959 1999-05-07 2016-01-15 8738 ENSG00000169372 OTTHUMG00000170322 uc001tda.4 U84388 NM_003805 "CCDS9048|CCDS81719|CCDS81720|CCDS81722" P78560 "8985253|9044836" MGI:1336168 RGD:1311010 CRADD 603454 303823 +HGNC:14122 CRAMP1 cramped chromatin regulator homolog 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 KIAA1426 CRAMP1L "Crm (Cramped Drosophila)-like|Crm, cramped-like (Drosophila)" Myb/SANT domain containing 532 2000-12-21 2015-08-20 2015-08-20 2015-08-20 57585 ENSG00000007545 OTTHUMG00000074087 AB037847 NM_020825 CCDS10440 Q96RY5 MGI:1930190 RGD:1311948 +HGNC:2342 CRAT carnitine O-acetyltransferase protein-coding gene gene with protein product Approved 9q34.11 09q34.11 CAT1 carnitine acetyltransferase 1994-07-04 2010-04-27 2016-10-05 1384 ENSG00000095321 OTTHUMG00000147343 uc004bxh.4 X78706 XM_017014274 CCDS6919 P43155 7829107 MGI:109501 RGD:1303031 CRAT 600184 2.3.1.7 +HGNC:2343 CRB1 crumbs 1, cell polarity complex component protein-coding gene gene with protein product Approved 1q31.3 01q31.3 LCA8 RP12 "crumbs (Drosophila) homolog 1|crumbs homolog 1 (Drosophila)|crumbs family member 1, photoreceptor morphogenesis associated" Crumbs complex 1223 1999-06-02 2016-02-22 2016-02-22 23418 ENSG00000134376 OTTHUMG00000035663 uc001gtz.4 NM_201253 "CCDS1390|CCDS53454|CCDS58052|CCDS58053" P82279 "10373321|10508521" MGI:2136343 RGD:1309947 Mutations of the Human Crumbs Homologue 1|http://www.retina-international.org/files/sci-news/crb1mut.htm CRB1 604210 120803 +HGNC:18688 CRB2 crumbs 2, cell polarity complex component protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "FLJ38464|FLJ16786" "crumbs homolog 2 (Drosophila)|crumbs family member 2" Crumbs complex 1223 2004-03-19 2016-02-22 2016-10-05 286204 ENSG00000148204 OTTHUMG00000020638 uc004bnx.3 AK095783 NM_173689 CCDS6852 Q5IJ48 14767562 MGI:2679260 RGD:1309368 CRB2 609720 422255 +HGNC:20237 CRB3 crumbs 3, cell polarity complex component protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC17303 "crumbs homolog 3 (Drosophila)|crumbs family member 3" Crumbs complex 1223 2003-01-10 2016-02-22 2016-02-22 92359 ENSG00000130545 OTTHUMG00000181828 uc002mfa.4 AF503290 NM_174881 "CCDS12166|CCDS12167" Q9BUF7 MGI:2670904 RGD:1565035 CRB3 609737 +HGNC:49684 CRB3P1 crumbs cell polarity complex component 3 pseudogene 1 pseudogene pseudogene Approved 3p26.3 03p26.3 crumbs family member 3 pseudogene 1 2014-02-06 2016-02-22 2016-02-22 106480279 ENSG00000232563 OTTHUMG00000154882 NG_044100 PGOHUM00000237519 +HGNC:30185 CRBN cereblon protein-coding gene gene with protein product Approved 3p26.2 03p26.2 MRT2 MRT2A mental retardation, non-syndromic, autosomal recessive, 2A 2004-05-19 2016-10-05 51185 ENSG00000113851 OTTHUMG00000090261 uc003bpq.4 BC017419 NM_016302 "CCDS2562|CCDS54547" Q96SW2 15557513 MGI:1913277 RGD:1310533 CRBN 609262 120811 +HGNC:17888 CRCP CGRP receptor component protein-coding gene gene with protein product Approved 7q11.21 07q11.21 "CGRP-RCP|RCP|RCP9" calcitonin gene-related peptide-receptor component protein 2008-11-28 2016-10-05 27297 ENSG00000241258 OTTHUMG00000129519 uc003tus.4 AF073792 NM_014478 "CCDS5532|CCDS47599|CCDS47600|CCDS55116" O75575 "8622957|10067875|12482973" MGI:1100818 RGD:620753 CRCP 606121 +HGNC:29875 CRCT1 cysteine rich C-terminal 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 NICE-1 C1orf42 "chromosome 1 open reading frame 42|cysteine-rich C-terminal 1" 2004-09-14 2006-12-18 2015-11-05 2016-10-05 54544 ENSG00000169509 OTTHUMG00000012391 uc001ezz.4 AJ243662 NM_019060 CCDS1012 Q9UGL9 11230159 MGI:1921425 RGD:1588886 CRCT1 +HGNC:2345 CREB1 cAMP responsive element binding protein 1 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 Basic leucine zipper proteins 506 1990-02-05 2016-10-05 1385 ENSG00000118260 OTTHUMG00000132936 uc002vcc.4 M27691 NM_134442 "CCDS2374|CCDS2375" P16220 MGI:88494 RGD:620218 CREB1 123810 246689 +HGNC:2347 CREB3 cAMP responsive element binding protein 3 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "LZIP|Luman|sLZIP" small leucine zipper protein cAMP responsive element binding protein 3 (luman) Basic leucine zipper proteins 506 1999-10-13 2003-11-06 2014-11-19 10488 ENSG00000107175 OTTHUMG00000019872 uc003zxv.4 AF211848 NM_006368 CCDS6588 O43889 9271389 MGI:99946 RGD:1308831 CREB3 606443 +HGNC:18856 CREB3L1 cAMP responsive element binding protein 3 like 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 OASIS BBF-2 homolog (drosophila) Basic leucine zipper proteins 506 2003-12-09 2016-06-01 2016-10-05 90993 ENSG00000157613 OTTHUMG00000166423 uc021qik.3 NM_052854 CCDS53620 Q96BA8 MGI:1347062 RGD:1359613 CREB3L1 616215 209329 +HGNC:23720 CREB3L2 cAMP responsive element binding protein 3 like 2 protein-coding gene gene with protein product Approved 7q33 07q33 "BBF2H7|TCAG_1951439" Basic leucine zipper proteins 506 2003-12-09 2016-06-01 2016-10-05 64764 ENSG00000182158 OTTHUMG00000155744 uc003vtw.4 AJ549092 NM_194071 "CCDS34760|CCDS59083" Q70SY1 MGI:2442695 RGD:1306040 CREB3L2 608834 209325 +HGNC:18855 CREB3L3 cAMP responsive element binding protein 3 like 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 CREB-H Basic leucine zipper proteins 506 2003-12-09 2016-06-01 2016-06-01 84699 ENSG00000060566 OTTHUMG00000181846 uc002lzl.4 NM_032607 "CCDS12121|CCDS62498|CCDS62499|CCDS62500" Q68CJ9 11353085 MGI:2384786 RGD:1308152 CREB3L3 611998 317857 +HGNC:18854 CREB3L4 cAMP responsive element binding protein 3 like 4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "AIbZIP|CREB4|CREB3|hJAL|ATCE1" Basic leucine zipper proteins 506 2003-12-09 2016-06-01 2016-10-05 148327 ENSG00000143578 OTTHUMG00000037159 uc001fdn.5 AF394167 NM_130898 "CCDS1056|CCDS58029" Q8TEY5 MGI:1916603 RGD:1359278 CREB3L4 607138 +HGNC:16844 CREB5 cAMP responsive element binding protein 5 protein-coding gene gene with protein product Approved 7p15.1-p14.3 07p15.1-p14.3 "H_GS165L15.1|CRE-BPA" cAMP response element binding protein CRE-Bpa Basic leucine zipper proteins 506 2003-09-04 2016-10-11 9586 ENSG00000146592 OTTHUMG00000097081 uc003szq.3 L05515 NM_004904 "CCDS5417|CCDS5418|CCDS43562|CCDS43563" Q02930 "8378084|8440710" MGI:2443973 RGD:1566107 CREB5 +HGNC:2348 CREBBP CREB binding protein protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "RTS|CBP|KAT3A" RSTS Rubinstein-Taybi syndrome "Zinc fingers ZZ-type|Lysine acetyltransferases" "91|486" 1995-01-10 2008-08-01 2015-09-11 1387 ENSG00000005339 OTTHUMG00000129431 uc002cvv.4 U85962 NM_004380 "CCDS10509|CCDS45399" Q92793 8413673 MGI:1098280 RGD:2401 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=CREBBP CREBBP 600140 120814 objectId:2734 +HGNC:2350 CREBL2 cAMP responsive element binding protein like 2 protein-coding gene gene with protein product Approved 12p13.1 12p13.1 cAMP responsive element binding protein-like 2 Basic leucine zipper proteins 506 1998-02-09 2016-03-08 2016-10-05 1389 ENSG00000111269 OTTHUMG00000168704 uc001rap.3 AF039081 NM_001310 CCDS8651 O60519 9693048 MGI:1889385 RGD:1309502 CREBL2 603476 +HGNC:24050 CREBRF CREB3 regulatory factor protein-coding gene gene with protein product Approved 5q35.1 05q35.1 LRF luman/CREB3 recruitment factor C5orf41 chromosome 5 open reading frame 41 2007-11-27 2012-03-06 2012-03-06 2016-10-05 153222 ENSG00000164463 OTTHUMG00000163322 uc003mch.4 AY139008 NM_153607 "CCDS34293|CCDS54948" Q8IUR6 18391022 MGI:1924378 RGD:1310862 617109 +HGNC:24905 CREBZF CREB/ATF bZIP transcription factor protein-coding gene gene with protein product Approved 11q14.1 11q14.1 ZF Zhangfei Basic leucine zipper proteins 506 2006-11-13 2014-11-19 58487 ENSG00000137504 OTTHUMG00000133648 uc001pas.3 AF039942 NM_001039618 CCDS41697 Q9NS37 10871379 MGI:2675296 RGD:1565584 CREBZF 606444 +HGNC:2351 CREG1 cellular repressor of E1A stimulated genes 1 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 CREG cellular repressor of E1A-stimulated genes 1999-06-24 2004-09-22 2016-01-07 2016-10-05 8804 ENSG00000143162 OTTHUMG00000034682 uc001gel.4 AF084523 NM_003851 CCDS1262 O75629 9710587 MGI:1344382 RGD:1306804 CREG1 +HGNC:14272 CREG2 cellular repressor of E1A stimulated genes 2 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 2004-01-13 2016-01-07 2016-10-05 200407 ENSG00000175874 OTTHUMG00000130692 uc002tba.3 AB046109 NM_153836 CCDS2052 Q8IUH2 12408961 MGI:1928333 RGD:1564056 CREG2 +HGNC:14630 CRELD1 cysteine rich with EGF like domains 1 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 AVSD2 "atrioventricular septal defect 2|cysteine-rich with EGF-like domains 1|cysteine rich with EGF-like domains 1" 2001-02-16 2016-01-21 2016-01-21 78987 ENSG00000163703 OTTHUMG00000128653 uc003buh.3 AF452623 NM_015513 "CCDS2593|CCDS33693" Q96HD1 "10922384|12137942" MGI:2152539 RGD:1309412 CRELD1 607170 120819 +HGNC:28150 CRELD2 cysteine rich with EGF like domains 2 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 MGC11256 "cysteine-rich with EGF-like domains 2|cysteine rich with EGF-like domains 2" 2005-12-08 2016-01-21 2016-01-21 79174 ENSG00000184164 OTTHUMG00000150292 uc003bja.4 BC050675 NM_024324 "CCDS14082|CCDS46730|CCDS63515|CCDS63516" Q6UXH1 12137942 MGI:1923987 RGD:1310614 CRELD2 607171 +HGNC:2352 CREM cAMP responsive element modulator protein-coding gene gene with protein product Approved 10p11.21 10p11.21 hCREM-2 Basic leucine zipper proteins 506 1994-06-17 2016-10-05 1390 ENSG00000095794 OTTHUMG00000017953 uc001iyb.4 NM_001881 "CCDS7180|CCDS7181|CCDS7182|CCDS7183|CCDS7184|CCDS7185|CCDS7186|CCDS7187|CCDS7188|CCDS31181|CCDS53519|CCDS53520|CCDS53517|CCDS53518|CCDS53521|CCDS58074|CCDS58075|CCDS58076" Q03060 "1461747|7916662" MGI:88495 RGD:2402 CREM 123812 +HGNC:2355 CRH corticotropin releasing hormone protein-coding gene gene with protein product Approved 8q13 08q13 "CRF|CRH1" "corticotropin-releasing factor|corticoliberin" Endogenous ligands 542 1988-08-31 2014-12-19 1392 ENSG00000147571 OTTHUMG00000164474 uc003xvy.3 NM_000756 CCDS6188 P06850 25521515 MGI:88496 RGD:620505 CRH 122560 394137 +HGNC:2356 CRHBP corticotropin releasing hormone binding protein protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "CRF-BP|CRFBP" corticotropin releasing hormone-binding protein 1991-08-07 2001-11-28 2014-12-19 1393 ENSG00000145708 OTTHUMG00000102133 uc003ker.4 X58022 NM_001882 CCDS4034 P24387 8198617 MGI:88497 RGD:2403 CRHBP 122559 +HGNC:2357 CRHR1 corticotropin releasing hormone receptor 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "CRF-R|CRF1" corticotropin-releasing factor receptor CRHR Corticotropin releasing hormone receptors 266 1993-12-13 2015-09-11 1394 ENSG00000120088 OTTHUMG00000178271 uc002ijm.4 L23332 NM_004382 "CCDS42350|CCDS45712|CCDS45713|CCDS45714|CCDS77049|CCDS58556" P34998 7590738 MGI:88498 RGD:61276 CRHR1 122561 objectId:212 +HGNC:26327 CRHR1-IT1 CRHR1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 FLJ25168 C17orf69 "chromosome 17 open reading frame 69|CRHR1 intronic transcript 1 (non-protein coding)" 2005-12-16 2012-10-03 2015-02-25 2015-02-25 147081 ENSG00000204650 uc284oiq.1 AK057897 NR_026905 Q96LR1 +HGNC:2358 CRHR2 corticotropin releasing hormone receptor 2 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "CRF2|CRF-RB|HM-CRF" Corticotropin releasing hormone receptors 266 1996-12-18 2015-08-26 1395 ENSG00000106113 OTTHUMG00000023218 uc003tbn.4 XM_011515127 "CCDS5429|CCDS56477|CCDS56478|CCDS75576" Q13324 8536644 MGI:894312 RGD:70547 CRHR2 602034 objectId:213 +HGNC:2359 CRIM1 cysteine rich transmembrane BMP regulator 1 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 S52 "cysteine-rich motor neuron 1|cysteine rich transmembrane BMP regulator 1 (chordin-like)" 1999-07-22 2016-06-10 2016-10-05 51232 ENSG00000150938 OTTHUMG00000099419 uc002rpd.4 AF168681 NM_016441 CCDS1783 Q9NZV1 10642437 MGI:1354756 RGD:1308710 CRIM1 606189 +HGNC:2360 CRIP1 cysteine rich protein 1 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 CRIP cysteine-rich protein 1 (intestinal) LIM domain containing 1218 1995-12-11 2016-01-28 2016-01-28 1396 ENSG00000213145 OTTHUMG00000029908 uc059gbj.1 NM_001311 CCDS10004 P50238 9480758 MGI:88501 RGD:1597237 CRIP1 123875 +HGNC:44516 CRIP1P1 cysteine rich protein 1 pseudogene 1 pseudogene pseudogene Approved 3p25.2 03p25.2 cysteine-rich protein 1 (intestinal) pseudogene 1 2012-11-14 2016-01-28 2016-01-28 106480793 ENSG00000233252 OTTHUMG00000155339 NG_044117 PGOHUM00000237942 +HGNC:44517 CRIP1P2 cysteine rich protein 1 pseudogene 2 pseudogene pseudogene Approved 3p24.2 03p24.2 cysteine-rich protein 1 (intestinal) pseudogene 2 2012-11-14 2016-01-28 2016-01-28 641456 ENSG00000238225 OTTHUMG00000155595 NG_005345 PGOHUM00000237964 +HGNC:44518 CRIP1P3 cysteine rich protein 1 pseudogene 3 pseudogene pseudogene Approved 1q32.1 01q32.1 cysteine-rich protein 1 (intestinal) pseudogene 3 2012-11-14 2016-01-28 2016-01-28 106479040 ENSG00000227109 OTTHUMG00000035927 NG_044424 PGOHUM00000245159 +HGNC:44519 CRIP1P4 cysteine rich protein 1 pseudogene 4 pseudogene pseudogene Approved 22q11.23 22q11.23 cysteine-rich protein 1 (intestinal) pseudogene 4 2012-11-14 2016-01-28 2016-01-28 641457 ENSG00000182351 OTTHUMG00000150730 NG_005346 PGOHUM00000246546 +HGNC:2361 CRIP2 cysteine rich protein 2 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "CRP2|ESP1" LIM domain containing 1218 1997-06-18 2016-01-28 2016-10-05 1397 ENSG00000182809 OTTHUMG00000029906 uc001yrd.3 NM_001312 "CCDS10003|CCDS59246" P52943 "8843343|10681529" MGI:1915587 RGD:1302959 CRIP2 601183 +HGNC:17751 CRIP3 cysteine rich protein 3 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "TLP-A|bA480N24.2|TLP" LIM domain containing 1218 2003-11-26 2016-01-28 2016-10-05 401262 ENSG00000146215 OTTHUMG00000014727 uc003ouu.2 AY555741 XM_005249103 CCDS4894 Q6Q6R5 15380775 MGI:2152434 RGD:1565018 CRIP3 +HGNC:26619 CRIPAK cysteine rich PAK1 inhibitor protein-coding gene gene with protein product Approved 4p16.3 04p16.3 FLJ34443 2006-06-22 2016-01-28 2016-01-28 285464 ENSG00000179979 OTTHUMG00000121131 uc003gdf.3 AK096209 NM_175918 CCDS3349 Q8N1N5 16278681 RGD:9273430 CRIPAK 610203 +HGNC:14312 CRIPT CXXC repeat containing interactor of PDZ3 domain protein-coding gene gene with protein product Approved 2p21 02p21 HSPC139 cysteine-rich PDZ-binding protein 2006-06-22 2016-01-28 2016-01-28 9419 ENSG00000119878 OTTHUMG00000128815 uc002rve.5 AA165108 NM_014171 CCDS1829 Q9P021 "16091592|11744724|10570482|9581762" MGI:1929655 RGD:621545 CRIPT 604594 +HGNC:304 CRISP1 cysteine rich secretory protein 1 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "CRISP-1|ARP|HUMARP|HSCRISP1D|HSCRISP1G" AEGL1 acidic epididymal glycoprotein-like 1 1995-09-29 2003-09-05 2016-01-28 2016-10-05 167 ENSG00000124812 OTTHUMG00000014827 uc021zaj.2 D38451 NM_001131 "CCDS4931|CCDS4932" P54107 8838800 MGI:1925331 RGD:1590757 CRISP1 601193 +HGNC:12024 CRISP2 cysteine rich secretory protein 2 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "CRISP-2|CT36" cancer/testis antigen 36 "GAPDL5|TPX1" testis specific protein 1 (probe H4-1 p3-1) 1989-10-20 2003-09-05 2016-01-28 2016-01-28 7180 ENSG00000124490 OTTHUMG00000014822 uc031sou.1 X95239 NM_003296 CCDS4928 P16562 "2613236|8665901" MGI:98815 RGD:621653 CRISP2 187430 +HGNC:16904 CRISP3 cysteine rich secretory protein 3 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "SGP28|CRISP-3|CRS3|dJ442L6.3|Aeg2" 2003-09-03 2016-01-28 2016-04-25 10321 ENSG00000096006 OTTHUMG00000014823 uc003ozs.5 X94323 NM_006061 "CCDS4929|CCDS55019" P54108 "8665901|12223513" CRISP3 +HGNC:18206 CRISPLD1 cysteine rich secretory protein LCCL domain containing 1 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "Cocoacrisp|DKFZp762F133" LCRISP1 LCCL domain containing cysteine-rich secretory protein 1 2005-02-11 2005-02-16 2016-01-28 2016-01-28 83690 ENSG00000121005 OTTHUMG00000164529 uc003yan.5 AL834301 NM_031461 "CCDS6219|CCDS69497|CCDS75754" Q9H336 MGI:1934666 RGD:1564813 CRISPLD1 +HGNC:25248 CRISPLD2 cysteine rich secretory protein LCCL domain containing 2 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 DKFZP434B044 LCRISP2 LCCL domain containing cysteine-rich secretory protein 2 2005-02-11 2005-02-16 2016-01-28 2016-01-28 83716 ENSG00000103196 OTTHUMG00000137644 uc010voh.2 AL136861 NM_031476 CCDS10949 Q9H0B8 11230166 MGI:1926142 RGD:620860 CRISPLD2 612434 +HGNC:2362 CRK CRK proto-oncogene, adaptor protein protein-coding gene gene with protein product Approved 17p13.3 17p13.3 v-crk avian sarcoma virus CT10 oncogene homolog SH2 domain containing 741 1992-12-07 2016-06-17 2016-10-05 1398 ENSG00000167193 OTTHUMG00000090317 uc002fsl.4 D10656 NM_016823 "CCDS11002|CCDS45561" P46108 1690891 MGI:88508 RGD:2405 CRK 164762 +HGNC:2363 CRKL CRK like proto-oncogene, adaptor protein protein-coding gene gene with protein product Approved 22q11.21 22q11.21 v-crk avian sarcoma virus CT10 oncogene homolog-like SH2 domain containing 741 1994-09-14 2016-06-17 2016-06-17 1399 ENSG00000099942 OTTHUMG00000150807 uc002ztf.2 NM_005207 CCDS13785 P46109 "8361759|8798523" MGI:104686 RGD:1308531 CRKL 602007 325261 +HGNC:2364 CRLF1 cytokine receptor like factor 1 protein-coding gene gene with protein product Approved 19p12 19p12 "CLF-1|CLF|CISS|CISS1" cold-induced sweating syndrome Fibronectin type III domain containing 555 1999-02-26 2016-04-26 2016-04-26 9244 ENSG00000006016 OTTHUMG00000183111 uc010ebt.3 AF059293 XM_011528422 CCDS32962 O75462 9686600 MGI:1340030 RGD:1311371 CRLF1 604237 123381 +HGNC:14281 CRLF2 cytokine receptor-like factor 2 protein-coding gene gene with protein product Approved Xp22.3 and Yp11.3 Xp22.3 and Yp11.3 "CRL2|TSLPR" "Fibronectin type III domain containing|Pseudoautosomal region 1" "555|715" 2001-02-06 2015-08-24 64109 ENSG00000205755 OTTHUMG00000067432 uc065cmw.1 AF142570 NM_022148 "CCDS75944|CCDS75945" Q9HC73 "11237741|11474172" MGI:1889506 RGD:621078 CRLF2 "300357|400023" objectId:1704 +HGNC:17177 CRLF3 cytokine receptor like factor 3 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "CREME9|CYTOR4" cytokine receptor-like factor 3 Fibronectin type III domain containing 555 2001-11-16 2016-03-30 2016-03-30 51379 ENSG00000176390 OTTHUMG00000179005 uc002hfr.5 AF120151 XR_001752525 CCDS32607 Q8IUI8 MGI:1860086 RGD:621517 CRLF3 614853 +HGNC:16148 CRLS1 cardiolipin synthase 1 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "dJ967N21.6|CLS1|GCD10" GCD10 homolog (S. cerevisiae) C20orf155 chromosome 20 open reading frame 155 2001-07-17 2006-04-04 2006-04-04 2016-10-05 54675 ENSG00000088766 OTTHUMG00000031823 uc002wmn.5 AF241784 NM_019095 "CCDS13096|CCDS46578" Q9UJA2 16547353 MGI:1913836 RGD:1311037 CRLS1 608188 2.7.8.41 +HGNC:2365 CRMP1 collapsin response mediator protein 1 protein-coding gene gene with protein product Approved 4p16.2 04p16.2 "DRP-1|DPYSL1" 1997-01-16 2016-10-05 1400 ENSG00000072832 OTTHUMG00000125489 uc003gis.5 D78012 NM_001313 "CCDS33950|CCDS43207|CCDS75102" Q14194 8973361 MGI:107793 RGD:2407 CRMP1 602462 M38.974 +HGNC:37078 CRNDE colorectal neoplasia differentially expressed (non-protein coding) non-coding RNA RNA, long non-coding Approved 16q12.2 16q12.2 "LOC643911|LINC00180|CRNDEP" long intergenic non-protein coding RNA 180 Long non-coding RNAs 788 2009-06-23 2009-06-26 2015-05-19 643911 ENSG00000245694 OTTHUMG00000172236 uc010vhb.5 NR_034105 "23226159|24381249|25978564" RGD:10398753 615624 +HGNC:15762 CRNKL1 crooked neck pre-mRNA splicing factor 1 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "CRN|CLF|SYF3|Clf1" SYF3 pre-mRNA-splicing factor "crooked neck (Drosophila Crn homolog)-like 1|Crn, crooked neck-like 1 (Drosophila)|crooked neck pre-mRNA splicing factor-like 1 (Drosophila)" 2001-05-31 2013-10-03 2016-10-05 51340 ENSG00000101343 OTTHUMG00000032000 uc061vse.1 AF255443 NM_016652 "CCDS33446|CCDS63238|CCDS63239" Q9BZJ0 MGI:1914127 RGD:620507 CRNKL1 610952 +HGNC:1230 CRNN cornulin protein-coding gene gene with protein product Approved 1q21.3 01q21.3 SEP53 C1orf10 chromosome 1 open reading frame 10 EF-hand domain containing 863 2000-03-15 2005-06-13 2005-06-13 2016-10-05 49860 ENSG00000143536 OTTHUMG00000012383 uc001ezx.3 AF077831 NM_016190 CCDS1010 Q9UBG3 "11056050|15854041" MGI:2685861 RGD:1311778 CRNN 611312 +HGNC:21299 CROCC ciliary rootlet coiled-coil, rootletin protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "rootletin|ROLT" rootletin, ciliary rootlet protein 2003-06-19 2009-03-04 2009-03-04 2015-09-11 9696 ENSG00000058453 OTTHUMG00000002200 uc001azt.2 AB007914 NM_014675 CCDS30616 Q5TZA2 "12427867|17971504" MGI:3529431 RGD:1305364 CROCC 615776 +HGNC:51677 CROCC2 ciliary rootlet coiled-coil, rootletin family member 2 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 2015-05-01 2015-09-11 728763 ENSG00000226321 OTTHUMG00000151855 XM_017005450 H7BZ55 23044541 MGI:3045962 RGD:7728853 +HGNC:33602 CROCCP1 ciliary rootlet coiled-coil, rootletin pseudogene 1 pseudogene pseudogene Approved Xq26.3 Xq26.3 CROCCP ciliary rootlet coiled-coil, rootletin pseudogene 2007-08-14 2010-07-08 2010-07-08 2014-11-19 392547 ENSG00000225769 OTTHUMG00000022480 NG_009690 PGOHUM00000264148 +HGNC:28170 CROCCP2 ciliary rootlet coiled-coil, rootletin pseudogene 2 pseudogene pseudogene Approved 1p36.13 01p36.13 MGC12760 CROCCL1 ciliary rootlet coiled-coil, rootletin-like 1 2007-08-14 2010-07-08 2010-07-08 2014-11-19 84809 ENSG00000215908 OTTHUMG00000037884 AK090414 NR_026752.1 Q86T23 12477932 PGOHUM00000243917 +HGNC:29405 CROCCP3 ciliary rootlet coiled-coil, rootletin pseudogene 3 pseudogene pseudogene Approved 1p36.13 01p36.13 KIAA1922 CROCCL2 ciliary rootlet coiled-coil, rootletin-like 2 2007-08-14 2010-07-08 2010-07-08 2014-11-19 114819 ENSG00000080947 OTTHUMG00000037885 AB067509 XM_057040 Q8IVE0 11572484 PGOHUM00000243914 +HGNC:43864 CROCCP4 ciliary rootlet coiled-coil, rootletin pseudogene 4 pseudogene pseudogene Approved 1p36.13 01p36.13 2012-04-04 2012-04-04 100421113 ENSG00000227684 OTTHUMG00000057485 NG_027067 PGOHUM00000244623 +HGNC:43865 CROCCP5 ciliary rootlet coiled-coil, rootletin pseudogene 5 pseudogene pseudogene Approved 1p36.12 01p36.12 2012-04-04 2013-05-20 100421114 ENSG00000186543 OTTHUMG00000002943 NG_027071 PGOHUM00000264165 +HGNC:2366 CROT carnitine O-octanoyltransferase protein-coding gene gene with protein product Approved 7q21.12 07q21.12 COT 2000-06-29 2016-10-05 54677 ENSG00000005469 OTTHUMG00000023653 uc003uit.4 NM_021151 "CCDS5604|CCDS47634|CCDS59062" Q9UKG9 10486279 MGI:1921364 RGD:70908 CROT 606090 +HGNC:2367 CRP C-reactive protein protein-coding gene gene with protein product Approved 1q23.2 01q23.2 PTX1 pentraxin 1 C-reactive protein, pentraxin-related Short pentraxins 1143 2001-06-22 2016-08-18 2016-08-18 1401 ENSG00000132693 OTTHUMG00000035344 uc001ftw.3 M11725 NM_000567 CCDS30911 P02741 "3840479|6857266" MGI:88512 RGD:2411 CRP 123260 +HGNC:2368 CRPP1 C-reactive protein pseudogene 1 pseudogene pseudogene Approved 1q23.2 01q23.2 2001-06-22 2014-11-19 171422 ENSG00000223603 OTTHUMG00000035345 NG_001016 PGOHUM00000244305 +HGNC:2374 CRSP5 cofactor required for Sp1 transcriptional activation, subunit 5 other unknown Approved reserved reserved CRSP85 "cofactor required for Sp1 transcriptional activation, subunit 5 (85kD)|cofactor required for Sp1 transcriptional activation, subunit 5, 85kDa" 1999-07-21 2015-11-09 2015-11-09 10688 10377381 +HGNC:14882 CRTAC1 cartilage acidic protein 1 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "FLJ10320|CEP-68|ASPIC1" 2001-05-11 2016-10-05 55118 ENSG00000095713 OTTHUMG00000018871 uc001kou.2 AJ276171 NM_018058 "CCDS31266|CCDS55723" Q9NQ79 11139377 MGI:1920082 RGD:621085 CRTAC1 606276 +HGNC:24313 CRTAM cytotoxic and regulatory T-cell molecule protein-coding gene gene with protein product Approved 11q24.1 11q24.1 CD355 class I MHC restricted T cell associated molecule cytotoxic and regulatory T cell molecule "CD molecules|V-set domain containing|C2-set domain containing" "471|590|592" 2006-06-27 2015-11-13 2015-11-13 56253 ENSG00000109943 OTTHUMG00000166026 uc001pyj.4 AF001622 NM_019604 "CCDS8437|CCDS76489" O95727 "10811014|16300832" MGI:1859822 RGD:1304602 CRTAM 612597 +HGNC:2379 CRTAP cartilage associated protein protein-coding gene gene with protein product Approved 3p22.3 03p22.3 "CASP|LEPREL3|P3H5" "leprecan-like 3|prolyl 3-hydroxylase family member 5 (non-enzymatic)" 1999-10-19 2016-10-12 10491 ENSG00000170275 OTTHUMG00000130746 uc003cfl.5 AJ006470 NM_006371 CCDS2657 O75718 "9217321|10429950" MGI:1891221 RGD:7602347 "Osteogenesis Imperfecta Variant Database|https://oi.gene.le.ac.uk/home.php?select_db=CRTAP|LRG_4|http://www.lrg-sequence.org/LRG/LRG_4" CRTAP 605497 138847 +HGNC:16062 CRTC1 CREB regulated transcription coactivator 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "KIAA0616|FLJ14027|TORC1" transducer of regulated cAMP response element-binding protein MECT1 mucoepidermoid carcinoma translocated 1 2001-08-01 2005-11-24 2005-11-24 2016-10-05 23373 ENSG00000105662 OTTHUMG00000183115 uc002nkb.5 AY040323 NM_025021 "CCDS32963|CCDS42525" Q6UUV9 "12539049|14536081|14506290" MGI:2142523 RGD:1589158 CRTC1 607536 +HGNC:27301 CRTC2 CREB regulated transcription coactivator 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 TORC2 2005-11-24 2014-11-19 200186 ENSG00000160741 OTTHUMG00000037156 uc057leo.1 AY360172 NM_181715 CCDS30875 Q53ET0 "14506290|14536081" MGI:1921593 RGD:1308903 CRTC2 608972 +HGNC:26148 CRTC3 CREB regulated transcription coactivator 3 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 FLJ21868 2005-11-24 2015-08-24 64784 ENSG00000140577 OTTHUMG00000172295 uc002bpp.5 NM_022769 "CCDS32331|CCDS45348" Q6UUV7 "14536081|14506290" MGI:1917711 RGD:1309666 CRTC3 608986 +HGNC:51433 CRTC3-AS1 CRTC3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q26.1 15q26.1 2014-11-26 2014-11-26 101926895 ENSG00000259736 OTTHUMG00000172335 BG472948 NR_120372 +HGNC:2381 CRTL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-02-02 +HGNC:2383 CRX cone-rod homeobox protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "CRD|LCA7|OTX3" orthodenticle homeobox 3 CORD2 PRD class homeoboxes and pseudogenes 521 1998-03-25 2016-10-05 1406 ENSG00000105392 OTTHUMG00000170610 uc002phq.5 AF024711 NM_000554 CCDS12706 O43186 "9390563|9537410" MGI:1194883 RGD:620511 Mutations of the Cone Rod Homeobox Gene|http://www.retina-international.org/files/sci-news/crxmut.htm CRX 602225 8425 120822 +HGNC:2384 CRY1 cryptochrome circadian clock 1 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 PHLL1 cryptochrome 1 (photolyase-like) 1996-10-26 2014-01-17 2016-10-05 1407 ENSG00000008405 OTTHUMG00000170005 uc001tmi.5 BC030519 NM_004075 CCDS9112 Q16526 8921389 MGI:1270841 RGD:735083 CRY1 601933 objectId:2876 +HGNC:2385 CRY2 cryptochrome circadian clock 2 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 cryptochrome 2 (photolyase-like) 1997-03-21 2014-01-17 2015-09-11 1408 ENSG00000121671 OTTHUMG00000153225 uc010rgn.2 AB014558 NM_021117 "CCDS7915|CCDS44576" Q49AN0 8909283 MGI:1270859 RGD:620935 CRY2 603732 +HGNC:2388 CRYAA crystallin alpha A protein-coding gene gene with protein product Approved 21q22.3 21q22.3 HSPB4 CRYA1 crystallin, alpha A Small heat shock proteins 585 1986-01-01 2015-11-12 2015-11-12 1409 ENSG00000160202 OTTHUMG00000086842 uc002zdd.3 XM_005261093 CCDS13695 P02489 MGI:88515 RGD:2413 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYAA CRYAA 123580 120828 +HGNC:2389 CRYAB crystallin alpha B protein-coding gene gene with protein product Approved 11q23.1 11q23.1 HSPB5 CRYA2 crystallin, alpha B Small heat shock proteins 585 1987-09-11 2015-11-12 2016-10-12 1410 ENSG00000109846 OTTHUMG00000166885 uc058hgc.1 XM_011542609 "CCDS8351|CCDS81626" P02511 8431633 MGI:88516 RGD:2414 "LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYAB|LRG_407|http://www.lrg-sequence.org/LRG/LRG_407" CRYAB 123590 120832 +HGNC:2394 CRYBA1 crystallin beta A1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 eye lens structural protein CRYB1 crystallin, beta A1 1986-01-01 2015-11-12 2016-10-05 1411 ENSG00000108255 OTTHUMG00000132729 uc002hdw.4 NM_005208 CCDS11249 P05813 "3745196|3770741" MGI:88518 RGD:2415 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYBA1 CRYBA1 123610 120836 +HGNC:2395 CRYBA2 crystallin beta A2 protein-coding gene gene with protein product Approved 2q35 02q35 crystallin, beta A2 1994-08-18 2015-11-12 2015-11-12 1412 ENSG00000163499 OTTHUMG00000133084 uc002vjj.2 NM_057093 CCDS2429 P53672 "7490092|12907171" MGI:104336 RGD:628768 CRYBA2 600836 409839 +HGNC:2396 CRYBA4 crystallin beta A4 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 crystallin, beta A4 1991-07-25 2015-11-12 2015-11-12 1413 ENSG00000196431 OTTHUMG00000150983 uc003acz.4 NM_001886 CCDS13841 P53673 "8999933|960806" MGI:102716 RGD:61962 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYBA4 CRYBA4 123631 120839 +HGNC:2397 CRYBB1 crystallin beta B1 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 crystallin, beta B1 1994-08-18 2015-11-12 2015-11-12 1414 ENSG00000100122 OTTHUMG00000150980 uc003acy.2 NM_001887 CCDS13840 P53674 "8575764|12360425" MGI:104992 RGD:2416 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYBB1 CRYBB1 600929 123359 +HGNC:2398 CRYBB2 crystallin beta B2 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "CCA2|CRYB2A|CRYB2" crystallin, beta B2 1991-06-28 2015-11-12 2015-11-12 1415 ENSG00000244752 OTTHUMG00000150905 uc003abp.2 NM_000496 CCDS13831 P43320 "9158139|8224918" MGI:88519 RGD:2417 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYBB2 CRYBB2 123620 120841 +HGNC:2399 CRYBB2P1 crystallin beta B2 pseudogene 1 pseudogene pseudogene Approved 22q11.2-q12.1 22q11.2-q12.1 CRYB2B crystallin, beta B2 pseudogene 1 1991-06-28 2015-11-12 2015-11-12 1416 ENSG00000100058 OTTHUMG00000150874 M18441 NR_033733 PGOHUM00000246551 +HGNC:2400 CRYBB3 crystallin beta B3 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 CRYB3 crystallin, beta B3 1988-05-11 2015-11-12 2015-11-12 1417 ENSG00000100053 OTTHUMG00000150869 uc003abo.3 NM_004076 CCDS13830 P26998 8999933 MGI:102717 RGD:61980 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYBB3 CRYBB3 123630 120846 +HGNC:34427 CRYBG3 crystallin beta-gamma domain containing 3 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 DKFZp667G2110 beta-gamma crystallin domain containing 3 2008-09-25 2015-11-12 2015-11-12 131544 ENSG00000080200 OTTHUMG00000159187 uc021xbn.3 NM_153605 Q68DQ2 MGI:2676311 RGD:1305628 CRYBG3 +HGNC:2408 CRYGA crystallin gamma A protein-coding gene gene with protein product Approved 2q33.3 02q33.3 "CRYG5|CRY-g-A" gamma crystallin 5 CRYG1 crystallin, gamma A 1986-01-01 2015-11-12 2016-10-05 1418 ENSG00000168582 OTTHUMG00000154796 uc002vcq.5 NM_014617 CCDS33367 P11844 MGI:88521 RGD:1595217 CRYGA 123660 +HGNC:2409 CRYGB crystallin gamma B protein-coding gene gene with protein product Approved 2q33.3 02q33.3 CRYG2 "crystallin, gamma 1-2|crystallin, gamma B" 1986-01-01 2015-11-12 2016-10-05 1419 ENSG00000182187 OTTHUMG00000132941 uc002vcp.5 NM_005210 CCDS2380 P07316 MGI:88522 RGD:1584991 CRYGB 123670 333104 +HGNC:2410 CRYGC crystallin gamma C protein-coding gene gene with protein product Approved 2q33.3 02q33.3 CRYG3 crystallin, gamma C 1986-01-01 2015-11-12 2015-11-12 1420 ENSG00000163254 OTTHUMG00000132942 uc002vco.4 NM_020989 CCDS2379 P07315 MGI:88523 RGD:2421 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYGC CRYGC 123680 120849 +HGNC:2411 CRYGD crystallin gamma D protein-coding gene gene with protein product Approved 2q33.3 02q33.3 CRYG4 crystallin, gamma D 1986-01-01 2015-11-12 2015-11-12 1421 ENSG00000118231 OTTHUMG00000132944 uc002vcn.5 NM_006891 CCDS2378 P07320 MGI:88524 RGD:2422 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYGD CRYGD 123690 120852 +HGNC:2412 CRYGEP crystallin gamma E, pseudogene pseudogene pseudogene Approved 2q33.3 02q33.3 G2 "CRYG5|CCL|CRYGEP1" "crystallin, gamma E pseudogene 1|crystallin, gamma E, pseudogene" 1986-01-01 2009-12-02 2015-11-12 2015-11-12 200575 ENSG00000229150 OTTHUMG00000154792 K03007 NG_002762 8004095 PGOHUM00000240506 +HGNC:2413 CRYGFP crystallin gamma F, pseudogene pseudogene pseudogene Approved 2q34 02q34 p1 "CRYG6|CRYGFP1" "crystallin, gamma F pseudogene 1|crystallin, gamma F pseudogene" 1986-01-01 2007-12-17 2015-11-12 2015-11-12 1423 ENSG00000232799 OTTHUMG00000154708 K03009 NG_001107 PGOHUM00000241095 +HGNC:2414 CRYGGP crystallin gamma G, pseudogene pseudogene pseudogene Approved 2p16.3 02p16.3 CRYGGP1 "crystallin, gamma G pseudogene 1|crystallin, gamma G, pseudogene" 1993-01-14 2009-12-02 2015-11-12 2015-11-12 1424 ENSG00000223710 OTTHUMG00000058411 X52628 NG_001108 PGOHUM00000240041 +HGNC:20458 CRYGN crystallin gamma N protein-coding gene gene with protein product Approved 7q36.1 07q36.1 crystallin, gamma N 2003-02-25 2015-11-12 2015-11-12 155051 ENSG00000127377 OTTHUMG00000157353 uc003wke.4 AF445455 XM_011515837 "CCDS5926|CCDS78289" Q8WXF5 MGI:2449167 RGD:1308547 CRYGN 609603 +HGNC:2415 CRYGP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:2416 CRYGP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:2417 CRYGS crystallin gamma S protein-coding gene gene with protein product Approved 3q27.3 03q27.3 crystallin, gamma 8 CRYG8 crystallin, gamma S 1989-05-25 2015-11-12 2015-11-12 1427 ENSG00000213139 OTTHUMG00000156615 uc031scs.2 NM_017541 CCDS3275 P22914 MGI:1298216 RGD:1587483 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=CRYGS CRYGS 123730 235204 +HGNC:18246 CRYL1 crystallin lambda 1 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "GDH|lambda-CRY|MGC149525|MGC149526" "crystallin, lamda 1|L-gulonate 3-dehydrogenase|lambda-crystallin homolog" crystallin, lambda 1 2002-02-22 2015-11-12 2016-10-05 51084 ENSG00000165475 OTTHUMG00000016516 uc001une.4 AF077049 NM_015974 CCDS41871 Q9Y2S2 12527201 MGI:1915881 RGD:631427 CRYL1 609877 +HGNC:2418 CRYM crystallin mu protein-coding gene gene with protein product Approved 16p12.2 16p12.2 DFNA40 thiomorpholine-carboxylate dehydrogenase crystallin, mu 1992-11-26 2015-11-12 2015-11-12 1428 ENSG00000103316 OTTHUMG00000090707 uc002dim.4 NM_001888 CCDS10597 Q14894 "1478656|21332720" MGI:102675 RGD:620943 CRYM 123740 166809 1.5.1.25 +HGNC:34405 CRYM-AS1 CRYM antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p12.2 16p12.2 FLJ41766 NCRNA00169 "non-protein coding RNA 169|CRYM antisense RNA 1 (non-protein coding)" 2009-01-26 2011-08-11 2012-08-15 2014-11-19 400508 ENSG00000189149 OTTHUMG00000156701 uc010bwr.2 NR_026675 A6NIL9 +HGNC:2419 CRYZ crystallin zeta protein-coding gene gene with protein product Approved 1p31.1 01p31.1 crystallin, zeta (quinone reductase) 1994-07-13 2015-11-12 2015-11-12 1429 ENSG00000116791 OTTHUMG00000009620 uc001dgk.4 XM_017000367 "CCDS665|CCDS44162|CCDS44163" Q08257 MGI:88527 RGD:1311639 CRYZ 123691 +HGNC:2420 CRYZL1 crystallin zeta like 1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "QOH-1|4P11" quinone reductase-like 1 crystallin, zeta (quinone reductase)-like 1 1999-05-06 2015-11-12 2016-10-05 9946 ENSG00000205758 OTTHUMG00000065954 uc061zsg.1 AF029689 NM_145858 CCDS13633 O95825 10191096 MGI:1913859 RGD:1310219 CRYZL1 603920 +HGNC:2421 CRYZP1 crystallin zeta pseudogene 1 pseudogene pseudogene Approved 7q22.1 07q22.1 crystallin, zeta (quinone reductase) pseudogene 1 1994-07-26 2015-11-12 2015-11-12 1430 ENSG00000233025 OTTHUMG00000157207 L31527 NG_001109 8088825 PGOHUM00000232951 +HGNC:49203 CRYZP2 crystallin zeta pseudogene 2 pseudogene pseudogene Approved 4q23 04q23 crystallin, zeta (quinone reductase) pseudogene 2 2013-10-08 2015-11-12 2015-11-12 100526735 ENSG00000250293 OTTHUMG00000161185 NG_027880 PGOHUM00000250724 +HGNC:2422 CS citrate synthase protein-coding gene gene with protein product Approved 12q13.3 12q13.3 2001-06-22 2016-10-05 1431 ENSG00000062485 OTTHUMG00000170344 uc001sks.2 NM_004077 CCDS8913 O75390 MGI:88529 RGD:620330 CS 118950 2.3.3.1 +HGNC:18966 CSAD cysteine sulfinic acid decarboxylase protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "PCAP|CSD" P-selectin cytoplasmic tail-associated protein 2002-07-25 2016-10-05 51380 ENSG00000139631 OTTHUMG00000048076 uc010snx.3 AB044561 NM_015989 "CCDS8848|CCDS58235" Q9Y600 15489334 MGI:2180098 RGD:621030 CSAD 616569 4.1.1.29 +HGNC:24294 CSAG1 chondrosarcoma associated gene 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "CSAGE|CT24.1" cancer/testis antigen family 24, member 1 2004-07-15 2014-11-19 158511 ENSG00000198930 OTTHUMG00000022648 uc033fah.1 AF268419 NM_153479 CCDS76047 Q6PB30 12039054 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CSAG1 CSAG1 300944 +HGNC:16847 CSAG2 CSAG family member 2 other unknown Approved Xq28 Xq28 "TRAG3|CT24.2" cancer/testis antigen family 24, member 2 CSAG3B "CSAG family, member 3B|CSAG family, member 2" 2004-07-15 2015-11-18 2015-11-18 102723547 ENSG00000268902 OTTHUMG00000022641 AF080246 NM_001080848 Q9Y5P2 10095106 CSAG2 PGOHUM00000258444 +HGNC:26237 CSAG3 CSAG family member 3 other unknown Approved Xq28 Xq28 CSAG3A "CSAG family, member 3A|CSAG family, member 3" 2005-06-01 2008-03-11 2015-11-18 2015-11-18 389903 ENSG00000268916 OTTHUMG00000188381 BC007228 NM_203311 Q9Y5P2 CSAG3 PGOHUM00000305395 +HGNC:20923 CSAG4 CSAG family member 4 (pseudogene) pseudogene pseudogene Approved Xq28 Xq28 "CSAG family, member 4|CSAG family, member 4 (pseudogene)" 2005-06-30 2015-11-18 2015-11-18 100130935 ENSG00000242599 OTTHUMG00000022646 BC013171 NR_073432 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CSAG4 CSAG4 PGOHUM00000241603 +HGNC:30359 CSDC2 cold shock domain containing C2 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 PIPPin cold shock domain containing C2, RNA binding 2005-08-22 2016-02-29 2016-02-29 27254 ENSG00000172346 OTTHUMG00000150967 uc003bak.2 AL834417 NM_014460 CCDS14019 Q9Y534 "8573167|12767259" MGI:2146027 RGD:628780 CSDC2 +HGNC:29905 CSDE1 cold shock domain containing E1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "D1S155E|UNR" upstream of NRAS cold shock domain containing E1, RNA binding 2005-07-26 2016-02-29 2016-02-29 7812 ENSG00000009307 OTTHUMG00000012060 uc001efk.4 NM_007158 "CCDS30811|CCDS30812|CCDS44197|CCDS55626" O75534 "2204029|10048485" MGI:92356 RGD:619726 CSDE1 191510 +HGNC:2431 CSE1L chromosome segregation 1 like protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "CAS|XPO2|CSE1" cellular apoptosis susceptibility "chromosome segregation 1 (yeast homolog)-like|CSE1 chromosome segregation 1-like (yeast)|CSE1 chromosome segregation 1 like" Exportins 547 1998-05-05 2016-04-25 2016-10-05 1434 ENSG00000124207 OTTHUMG00000033046 uc002xty.5 U33286 NM_001316 "CCDS13412|CCDS58773" P55060 "8963895|7479798" MGI:1339951 RGD:1307536 CSE1L 601342 +HGNC:51232 CSE1L-AS1 CSE1L antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-08-08 2014-08-08 102723483 ENSG00000227431 OTTHUMG00000032688 NR_110624 +HGNC:2432 CSF1 colony stimulating factor 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "M-CSF|MCSF|MGC31930" macrophage colony stimulating factor 1 colony stimulating factor 1 (macrophage) 1986-01-01 2016-01-14 2016-01-14 1435 ENSG00000184371 OTTHUMG00000011646 uc001dyw.5 BC021117 NM_000757 "CCDS816|CCDS817|CCDS30797" P09603 1540160 MGI:1339753 RGD:621063 CSF1 120420 +HGNC:2433 CSF1R colony stimulating factor 1 receptor protein-coding gene gene with protein product Approved 5q32 05q32 "C-FMS|CSFR|CD115" FMS McDonough feline sarcoma viral (v-fms) oncogene homolog "Receptor Tyrosine Kinases|CD molecules|Immunoglobulin like domain containing" "321|471|594" 2001-06-22 2008-08-01 2015-09-11 1436 ENSG00000182578 OTTHUMG00000130050 uc003lrm.3 U63963 NM_005211 CCDS4302 P07333 1611909 MGI:1339758 RGD:2425 CSF1R 164770 317674 objectId:1806 CD115 +HGNC:2434 CSF2 colony stimulating factor 2 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "GM-CSF|GMCSF" "sargramostim|molgramostin|granulocyte-macrophage colony stimulating factor" colony stimulating factor 2 (granulocyte-macrophage) 2001-06-22 2016-01-14 2016-10-05 1437 ENSG00000164400 OTTHUMG00000059637 uc003kwf.5 M11734 NM_000758 CCDS4150 P04141 "3898082|2999978" MGI:1339752 RGD:621065 CSF2 138960 +HGNC:2435 CSF2RA colony stimulating factor 2 receptor alpha subunit protein-coding gene gene with protein product Approved Xp22.32 and Yp11.3 Xp22.32 and Yp11.3 CD116 CSF2R colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) "CD molecules|Pseudoautosomal region 1" "471|715" 1990-07-03 2016-01-14 2016-10-12 1438 ENSG00000198223 OTTHUMG00000012533 uc010nvv.3 M64445 XM_011546165 "CCDS35190|CCDS35191|CCDS35192|CCDS35193|CCDS55359|CCDS55360|CCDS55361" P15509 1702217 MGI:1339754 RGD:1594330 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CSF2RA|LRG_186|http://www.lrg-sequence.org/LRG/LRG_186" CSF2RA "306250|425000" 209477 objectId:1707 CD116 +HGNC:2436 CSF2RB colony stimulating factor 2 receptor beta common subunit protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "IL5RB|CD131" beta common cytokine receptor IL3RB colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) "CD molecules|Fibronectin type III domain containing" "471|555" 1991-08-07 2016-01-14 2016-01-14 1439 ENSG00000100368 OTTHUMG00000150546 uc003aqa.5 M59941 NM_000395 CCDS13936 P32927 "1833064|1424804" "MGI:1339759|MGI:1339760" RGD:620189 CSF2RB 138981 120855 objectId:2306 CD131 +HGNC:2437 CSF2RBP1 colony stimulating factor 2 receptor beta common subunit pseudogene 1 pseudogene pseudogene Approved 22q12.3 22q12.3 CSF2RB2 "colony stimulating factor 2 receptor, beta, 2|colony stimulating factor 2 receptor, beta, 2 pseudogene|colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage) pseudogene 1" 1999-10-29 2011-04-28 2016-01-14 2016-01-14 23772 ENSG00000232254 OTTHUMG00000150535 NG_002638 10591208 +HGNC:2438 CSF3 colony stimulating factor 3 protein-coding gene gene with protein product Approved 17q21.1 17q21.1 MGC45931 "granulocyte colony stimulating factor|pluripoietin|filgrastim|lenograstim" "GCSF|G-CSF|C17orf33" "chromosome 17 open reading frame 33|colony stimulating factor 3 (granulocyte)" Endogenous ligands 542 2001-06-22 2015-11-06 2016-10-05 1440 ENSG00000108342 OTTHUMG00000133247 uc002htp.4 NM_172220 "CCDS11357|CCDS11358|CCDS42314" P09919 "3499671|3501046" MGI:1339751 RGD:2426 CSF3 138970 +HGNC:2439 CSF3R colony stimulating factor 3 receptor protein-coding gene gene with protein product Approved 1p34.3 01p34.3 GCSFR CD114 colony stimulating factor 3 receptor (granulocyte) "CD molecules|Fibronectin type III domain containing" "471|555" 1990-12-10 2015-11-06 2016-10-12 1441 ENSG00000119535 OTTHUMG00000008010 uc001caw.3 M59820 NM_156039 "CCDS412|CCDS413|CCDS414" Q99062 1371413 MGI:1339755 RGD:1309114 LRG_144|http://www.lrg-sequence.org/LRG/LRG_144 CSF3R 138971 159476 objectId:1719 CD114 +HGNC:24290 CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "CSGalNAcT-1|FLJ11264|ChGn" "chondroitin beta1,4 N-acetylgalactosaminyltransferase|glucuronylgalactosylproteoglycan 4-beta-N- acetylgalactosaminyltransferase" Beta 4-glycosyltransferases 425 2008-02-26 2016-01-14 55790 ENSG00000147408 OTTHUMG00000130827 uc011kyo.2 AK002126 NM_018371 CCDS6010 Q8TDX6 "17145758|12446672" MGI:2442354 RGD:1307618 CSGALNACT1 616615 2.4.1.74 +HGNC:24292 CSGALNACT2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "GALNACT2|MGC40204|PRO0082|GALNACT-2" "chondroitin beta1,4 N-acetylgalactosaminyltransferase 2|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase 2" Beta 4-glycosyltransferases 425 2008-02-26 2015-12-04 55454 ENSG00000169826 OTTHUMG00000018023 uc001jan.5 AF116646 NM_018590 CCDS7201 Q8N6G5 12446672 MGI:1926002 RGD:1563660 CSGALNACT2 616616 2.4.1.174 +HGNC:2440 CSH1 chorionic somatomammotropin hormone 1 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "hCS-A|CSA|PL|CSMT|FLJ75407" "chorionic somatomammotropin A|placental lactogen|choriomammotropin" Growth hormone family 1175 1986-01-01 2016-01-12 2016-01-15 1442 ENSG00000136488 OTTHUMG00000171947 uc002jcs.3 J00118 NM_001317 CCDS11649 P0DML2 6208192 CSH1 150200 +HGNC:2441 CSH2 chorionic somatomammotropin hormone 2 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "hCS-B|CSB|CS-2" "placental lactogen|chorionic somatomammotropin B" Growth hormone family 1175 2001-06-22 2016-01-15 1443 ENSG00000213218 OTTHUMG00000172283 uc002jch.4 V00573 NM_020991 "CCDS11646|CCDS42368|CCDS42369" P0DML3 "593368|6208192" CSH2 118820 +HGNC:2442 CSHL1 chorionic somatomammotropin hormone like 1 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "hCS-L|CSL|CS-5|MGC149868" chorionic somatomammotropin CS-5 CSHP1 Growth hormone family 1175 2001-06-22 2016-01-12 2016-01-12 1444 ENSG00000204414 OTTHUMG00000172287 uc002jda.2 BC029365 NM_022579 "CCDS11652|CCDS42370|CCDS45759|CCDS82189" Q14406 8083227 MGI:95707 CSHL1 603515 +HGNC:2444 CSK c-src tyrosine kinase protein-coding gene gene with protein product Approved 15q24.1 15q24.1 SH2 domain containing 741 1992-03-20 2015-08-28 1445 ENSG00000103653 OTTHUMG00000142814 uc002ays.3 NM_004383 CCDS10269 P41240 1377109 MGI:88537 RGD:1308800 CSK 124095 objectId:1994 2.7.10.1 +HGNC:14026 CSMD1 CUB and Sushi multiple domains 1 protein-coding gene gene with protein product Approved 8p23.2 08p23.2 "KIAA1890|PPP1R24" protein phosphatase 1, regulatory subunit 24 "Protein phosphatase 1 regulatory subunits|Sushi domain containing" "694|1179" 2000-12-21 2015-08-28 64478 ENSG00000183117 OTTHUMG00000163605 uc064jzp.1 NM_033225 CCDS55189 Q96PZ7 MGI:2137383 RGD:1305103 CSMD1 608397 +HGNC:19290 CSMD2 CUB and Sushi multiple domains 2 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 KIAA1884 Sushi domain containing 1179 2002-11-26 2016-10-05 114784 ENSG00000121904 OTTHUMG00000011135 uc001bxm.2 AY210418 NM_052896 "CCDS380|CCDS60082" Q7Z408 "11472063|11572484" MGI:2386401 RGD:1565728 CSMD2 608398 +HGNC:40882 CSMD2-AS1 CSMD2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p35.1 01p35.1 2014-05-21 2014-11-19 402779 ENSG00000231163 OTTHUMG00000013025 NR_038372 +HGNC:19291 CSMD3 CUB and Sushi multiple domains 3 protein-coding gene gene with protein product Approved 8q23.3 08q23.3 Sushi domain containing 1179 2003-01-14 2015-09-11 114788 ENSG00000164796 OTTHUMG00000157027 uc003ynu.4 AY210419 NM_052900 "CCDS6315|CCDS6316|CCDS6317" Q7Z407 MGI:2386403 RGD:1594530 CSMD3 608399 +HGNC:2445 CSN1S1 casein alpha s1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "CASA|CSN1" casein, alpha 1987-09-11 2003-01-31 2003-01-24 2016-10-05 1446 ENSG00000126545 OTTHUMG00000160843 uc003hep.2 X78416 NM_001890 "CCDS47067|CCDS54769" P47710 "9050925|7619062" MGI:88540 RGD:2430 CSN1S1 115450 +HGNC:20230 CSN1S2AP casein alpha s2-like A, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 CSN1S2A casein alpha s2-like A 2003-01-15 2010-10-28 2010-10-28 2014-11-19 286828 ENSG00000234124 OTTHUMG00000160842 AY154892 XM_379270 13679022 MGI:88542 +HGNC:20227 CSN1S2BP casein alpha s2-like B, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 CSN1S2B casein alpha s2-like B 2003-01-15 2010-10-28 2010-10-28 2010-10-28 100337616 AW104440 NR_033311.1 13679022 MGI:105312 +HGNC:2447 CSN2 casein beta protein-coding gene gene with protein product Approved 4q13.3 04q13.3 CASB 1987-09-11 2016-10-05 1447 ENSG00000135222 OTTHUMG00000129409 uc003hes.5 X17070 XM_017007760 CCDS3532 P05814 1577486 MGI:88541 RGD:61981 CSN2 115460 +HGNC:2446 CSN3 casein kappa protein-coding gene gene with protein product Approved 4q13.3 04q13.3 CSN10 casein, kappa 1997-04-21 2003-01-31 2003-01-24 2016-10-05 1448 ENSG00000171209 OTTHUMG00000129399 uc003hfe.5 U51899 NM_005212 CCDS3538 P07498 "8863730|9050925" MGI:107461 RGD:61990 CSN3 601695 +HGNC:2451 CSNK1A1 casein kinase 1 alpha 1 protein-coding gene gene with protein product Approved 5q32 05q32 "CK1|CK1a|CK1alpha|CKIa|CKIalpha" clock regulator kinase casein kinase 1, alpha 1 1994-12-13 2016-01-21 2016-01-21 1452 ENSG00000113712 OTTHUMG00000163463 uc003lqw.3 AF119911 NM_001892 "CCDS47303|CCDS47304|CCDS64291" P48729 8050587 MGI:1934950 RGD:71098 CSNK1A1 600505 objectId:1995 +HGNC:20289 CSNK1A1L casein kinase 1 alpha 1 like protein-coding gene gene with protein product Approved 13q13.3 13q13.3 MGC33182 casein kinase 1, alpha 1-like 2004-04-16 2016-01-21 2016-10-05 122011 ENSG00000180138 OTTHUMG00000016748 uc001uwm.2 BC028723 NM_145203 CCDS9363 Q8N752 CSNK1A1L objectId:1996 +HGNC:30446 CSNK1A1P1 casein kinase 1 alpha 1 pseudogene 1 pseudogene pseudogene Approved 15q14 15q14 CSNK1A1P "casein kinase 1, alpha 1 pseudogene|casein kinase 1, alpha 1 pseudogene 1" 2009-03-11 2010-07-20 2016-01-21 2016-10-05 161635 ENSG00000223518 OTTHUMG00000172664 BC028192 NR_027320 PGOHUM00000251178 +HGNC:30445 CSNK1A1P2 casein kinase 1 alpha 1 pseudogene 2 pseudogene pseudogene Approved 11q22.2 11q22.2 casein kinase 1, alpha 1 pseudogene 2 2010-07-20 2016-01-21 2016-01-21 120321 NG_001532 +HGNC:38669 CSNK1A1P3 casein kinase 1 alpha 1 pseudogene 3 pseudogene pseudogene Approved 5q15 05q15 casein kinase 1, alpha 1 pseudogene 3 2010-07-20 2016-01-21 2016-01-21 100526776 ENSG00000250162 OTTHUMG00000162747 NG_027923 PGOHUM00000235710 +HGNC:2452 CSNK1D casein kinase 1 delta protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "HCKID|CKID|CKIdelta" casein kinase 1, delta 1995-09-27 2016-01-21 2016-10-05 1453 ENSG00000141551 OTTHUMG00000178601 uc002kej.4 NM_139062 "CCDS11805|CCDS11806" P48730 7797465 MGI:1355272 RGD:71031 CSNK1D 600864 165845 objectId:1997 +HGNC:2453 CSNK1E casein kinase 1 epsilon protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "HCKIE|CKIE|CKIepsilon" casein kinase 1, epsilon 1995-09-27 2016-01-21 2016-01-21 1454 ENSG00000213923 OTTHUMG00000151135 uc003avm.3 NM_001894 CCDS13970 P49674 "7797465|10535959" MGI:1351660 RGD:62045 CSNK1E 600863 objectId:1998 +HGNC:2454 CSNK1G1 casein kinase 1 gamma 1 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 CK1gamma1 casein kinase 1, gamma 1 2000-05-31 2016-01-21 2016-10-05 53944 ENSG00000169118 OTTHUMG00000133019 uc002anf.5 AB042562 NM_022048 CCDS10192 Q9HCP0 11124537 MGI:2660884 RGD:621404 CSNK1G1 606274 objectId:1999 +HGNC:2455 CSNK1G2 casein kinase 1 gamma 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 CK1g2 casein kinase 1, gamma 2 1997-07-01 2016-01-21 2016-01-21 1455 ENSG00000133275 OTTHUMG00000180016 uc002lul.5 AF001177 NM_001319 CCDS12077 P78368 9403068 MGI:1920014 RGD:621407 CSNK1G2 602214 objectId:2000 +HGNC:28604 CSNK1G2-AS1 CSNK1G2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19p13.3 19p13.3 MGC39696 C19orf34 "chromosome 19 open reading frame 34|CSNK1G2 antisense RNA 1 (non-protein coding)" 2004-07-30 2011-11-24 2012-08-15 2012-10-12 255193 ENSG00000180846 OTTHUMG00000179999 uc060rgh.1 BC029585 NR_033400 Q8NCQ2 12477932 +HGNC:49739 CSNK1G2P1 casein kinase 1 gamma 2 pseudogene 1 pseudogene pseudogene Approved 9p24.1 09p24.1 casein kinase 1, gamma 2 pseudogene 1 2014-02-13 2016-01-21 2016-01-21 100419821 ENSG00000234534 OTTHUMG00000019483 NG_023867 PGOHUM00000236358 +HGNC:2456 CSNK1G3 casein kinase 1 gamma 3 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 casein kinase 1, gamma 3 1998-08-25 2016-01-21 2016-10-05 1456 ENSG00000151292 OTTHUMG00000128923 uc031skw.2 AF049090 NM_004384 "CCDS4135|CCDS34218|CCDS43355|CCDS59491|CCDS59492|CCDS59493" Q9Y6M4 9925945 MGI:1917675 RGD:621408 CSNK1G3 604253 objectId:2001 +HGNC:2457 CSNK2A1 casein kinase 2 alpha 1 protein-coding gene gene with protein product Approved 20p13 20p13 casein kinase 2, alpha 1 polypeptide 1992-02-13 2016-01-21 2016-01-21 1457 ENSG00000101266 OTTHUMG00000031636 uc002wdx.2 M55265 NM_001895 "CCDS13003|CCDS13004" P68400 "2174700|1766873" MGI:88543 RGD:621663 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=CSNK2A1 CSNK2A1 115440 objectId:1549 +HGNC:2459 CSNK2A2 casein kinase 2 alpha 2 protein-coding gene gene with protein product Approved 16q21 16q21 "CSNK2A1|CK2alpha'" casein kinase 2 alpha' casein kinase 2, alpha prime polypeptide 1992-02-13 2016-01-21 2016-01-21 1459 ENSG00000070770 OTTHUMG00000133488 uc002enc.4 M55268 NM_001896 CCDS10794 P19784 "2174700|1766873" MGI:88547 RGD:1306882 CSNK2A2 115442 objectId:1550 +HGNC:2458 CSNK2A3 casein kinase 2 alpha 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 CSNK2A1P "casein kinase 2, alpha 1 polypeptide pseudogene|casein kinase 2, alpha 3 polypeptide" 1992-11-25 2013-01-17 2016-01-21 2016-10-05 283106 ENSG00000254598 OTTHUMG00000165708 uc001mjp.4 X64692 NM_001256686 CCDS59224 Q8NEV1 "12102635|1610905|20625391" +HGNC:2460 CSNK2B casein kinase 2 beta protein-coding gene gene with protein product Approved 6p21.33 06p21.33 casein kinase 2, beta polypeptide 1990-05-23 2016-01-21 2016-01-21 1460 ENSG00000204435 OTTHUMG00000177888 uc003nvr.3 M30448 NM_001320 CCDS4712 P67870 "2276748|9503014" MGI:88548 RGD:619978 CSNK2B 115441 objectId:1551 2.7.11.1 +HGNC:2466 CSPG4 chondroitin sulfate proteoglycan 4 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "MCSPG|MEL-CSPG|MSK16|NG2|MCSP|HMW-MAA" melanoma-associated chondroitin sulfate proteoglycan chondroitin sulfate proteoglycan 4 (melanoma-associated) Proteoglycans 570 1997-11-28 2007-02-16 2014-11-18 1464 ENSG00000173546 OTTHUMG00000142836 uc002baw.3 "X96753|AY359468" NM_001897 CCDS10284 Q6UVK1 "8790396|16407841" MGI:2153093 RGD:619942 CSPG4 601172 +HGNC:16478 CSPG4P1Y chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "CSPG4LYP1|CSPG4P1" "chondroitin sulfate proteoglycan 4-like, Y-linked pseudogene 1|chondroitin sulfate proteoglycan 4 pseudogene 1" 2001-09-21 2010-06-28 2010-06-28 2010-06-28 114758 ENSG00000240450 OTTHUMG00000045282 uc004fxc.2 AF332228 NR_001554 400034 +HGNC:32424 CSPG4P2Y chondroitin sulfate proteoglycan 4 pseudogene 2, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 melanoma associated chondroitin sulfate proteoglycan like "CSPG4LYP2|CSPG4P2" "chondroitin sulfate proteoglycan 4-like, Y-linked pseudogene 2|chondroitin sulfate proteoglycan 4 pseudogene 2" 2005-12-16 2010-06-28 2010-06-28 2016-10-05 84664 ENSG00000244231 OTTHUMG00000045073 uc004fwc.2 NR_002194 12815422 +HGNC:38111 CSPG4P3Y chondroitin sulfate proteoglycan 4 pseudogene 3, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "CSPG4P3|CSPG4P6Y" "chondroitin sulfate proteoglycan 4 pseudogene 3|chondroitin sulfate proteoglycan 4 pseudogene 6, Y-linked" 2010-04-19 2010-06-30 2010-06-30 2014-11-19 100287261 ENSG00000172342 OTTHUMG00000045077 NG_022958 PGOHUM00000233840 +HGNC:38535 CSPG4P4Y chondroitin sulfate proteoglycan 4 pseudogene 4, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "CSPG4P4|CSPG4P7Y" "chondroitin sulfate proteoglycan 4 pseudogene 4|chondroitin sulfate proteoglycan 4 pseudogene 7, Y-linked" 2010-06-08 2010-06-30 2010-06-30 2014-11-19 100287502 ENSG00000172294 OTTHUMG00000045284 NG_022953 PGOHUM00000234082 +HGNC:29403 CSPG4P5 chondroitin sulfate proteoglycan 4 pseudogene 5 pseudogene pseudogene Approved 15q25.2 15q25.2 2010-06-30 2015-02-02 114817 ENSG00000272887 OTTHUMG00000172439 AB067507 NG_006511 Q96PW8 11572484 PGOHUM00000246902 +HGNC:48359 CSPG4P8 chondroitin sulfate proteoglycan 4 pseudogene 8 pseudogene pseudogene Approved 15q25.2 15q25.2 2013-05-10 2015-02-02 440297 +HGNC:48360 CSPG4P9 chondroitin sulfate proteoglycan 4 pseudogene 9 pseudogene pseudogene Approved 15q25.2 alternate reference locus 15q25.2 alternate reference locus 2013-05-10 2015-02-09 642288 NG_012729 PGOHUM00000262070 +HGNC:48361 CSPG4P10 chondroitin sulfate proteoglycan 4 pseudogene 10 pseudogene pseudogene Approved 15q25.2 15q25.2 2013-05-10 2015-07-31 390627 ENSG00000276710 OTTHUMG00000170548 NG_022135 PGOHUM00000293318 +HGNC:48363 CSPG4P11 chondroitin sulfate proteoglycan 4 pseudogene 11 pseudogene pseudogene Approved 15q25.2 15q25.2 2013-05-10 2013-05-10 100631254 ENSG00000259726 OTTHUMG00000172497 NG_029302 PGOHUM00000247233 +HGNC:48362 CSPG4P12 chondroitin sulfate proteoglycan 4 pseudogene 12 pseudogene pseudogene Approved 15q25.3 15q25.3 2013-05-10 2015-02-02 728121 ENSG00000259295 OTTHUMG00000172141 NG_022136 PGOHUM00000293340 +HGNC:49195 CSPG4P13 chondroitin sulfate proteoglycan 4 pseudogene 13 pseudogene pseudogene Approved 15q24.3 15q24.3 2013-09-26 2013-09-26 100302666 ENSG00000260139 OTTHUMG00000172978 NG_012725 PGOHUM00000247189 +HGNC:2467 CSPG5 chondroitin sulfate proteoglycan 5 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 NGC neuroglycan C chondroitin sulfate proteoglycan 5 (neuroglycan C) 1999-07-23 2015-12-16 2016-10-05 10675 ENSG00000114646 OTTHUMG00000133518 uc003crp.5 AF059274 NM_006574 "CCDS2757|CCDS56252|CCDS56253|CCDS74930" O95196 9950058 MGI:1352747 RGD:2431 CSPG5 606775 +HGNC:26193 CSPP1 centrosome and spindle pole associated protein 1 protein-coding gene gene with protein product Approved 8q13.1-q13.2 08q13.1-q13.2 "FLJ22490|CSPP|JBTS21" 2005-09-06 2016-10-11 79848 ENSG00000104218 OTTHUMG00000164564 uc003xxj.4 AJ583433 NM_024790 "CCDS43744|CCDS78344" Q1MSJ5 "15580290|24360807" MGI:2681832 RGD:1307055 CSPP1 611654 390741 +HGNC:14300 CSRNP1 cysteine and serine rich nuclear protein 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "URAX1|DKFZp566F164|FAM130B|TAIP-3" AXUD1 "AXIN1 up-regulated 1|cysteine-serine-rich nuclear protein 1" 2001-01-03 2009-04-17 2016-03-08 2016-10-05 64651 ENSG00000144655 OTTHUMG00000131293 uc003cjh.4 AB053121 NM_033027 CCDS2682 Q96S65 "11526492|17726538" MGI:2387989 RGD:1305999 CSRNP1 606458 +HGNC:16006 CSRNP2 cysteine and serine rich nuclear protein 2 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "C12ORF2|TAIP-12|PPP1R72" protein phosphatase 1, regulatory subunit 72 "C12orf22|FAM130A1" "chromosome 12 open reading frame 22|family with sequence similarity 130, member A1|cysteine-serine-rich nuclear protein 2" Protein phosphatase 1 regulatory subunits 694 2001-06-28 2009-01-07 2016-03-08 2016-03-08 81566 ENSG00000110925 OTTHUMG00000169578 uc001rxu.3 AJ298133 XM_017019991 CCDS8807 Q9H175 17726538 MGI:2386852 RGD:1308916 CSRNP2 +HGNC:30729 CSRNP3 cysteine and serine rich nuclear protein 3 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "FLJ32093|TAIP-2|PPP1R73" "TGF beta induced apotosis protein 2|protein phosphatase 1, regulatory subunit 73" FAM130A2 "family with sequence similarity 130, member A2|cysteine-serine-rich nuclear protein 3" Protein phosphatase 1 regulatory subunits 694 2007-01-19 2009-01-07 2016-03-08 2016-03-08 80034 ENSG00000178662 OTTHUMG00000132145 uc002udf.3 AB063300 NM_024969 CCDS2225 Q8WYN3 17726538 MGI:1925021 RGD:1306214 CSRNP3 +HGNC:2469 CSRP1 cysteine and glycine rich protein 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "CSRP|D1S181E" CYRP LIM domain containing 1218 1992-06-26 2015-11-23 2016-10-05 1465 ENSG00000159176 OTTHUMG00000035773 uc001gws.4 M33146 NM_004078 CCDS1413 P21291 "2115670|9925910" MGI:88549 RGD:62053 CSRP1 123876 +HGNC:2470 CSRP2 cysteine and glycine rich protein 2 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 "SmLIM|CRP2|LMO5" LIM domain containing 1218 1997-06-18 2015-11-23 2016-10-05 1466 ENSG00000175183 OTTHUMG00000169919 uc001syl.2 BC000992 NM_001321 CCDS9015 Q16527 "7499425|9286703" MGI:1202907 RGD:61950 CSRP2 601871 +HGNC:2471 CSRP2P1 cysteine and glycine rich protein 2 pseudogene 1 pseudogene pseudogene Approved 3q13.33 03q13.33 CSRP2P cysteine and glycine rich protein 2 pseudogene 1997-06-18 2015-11-23 2015-11-23 2015-11-23 1467 U72535 NG_000852 9286703 PGOHUM00000299144 +HGNC:2472 CSRP3 cysteine and glycine rich protein 3 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "CLP|MLP|CMD1M" cardiac LIM protein LIM domain containing 1218 1999-07-21 2015-11-23 2016-10-12 8048 ENSG00000129170 OTTHUMG00000166100 uc001mpk.4 U20324 NM_003476 CCDS7848 P50461 7490106 MGI:1330824 RGD:71092 LRG_440|http://www.lrg-sequence.org/LRG/LRG_440 CSRP3 600824 120860 +HGNC:2473 CST1 cystatin SN protein-coding gene gene with protein product Approved 20p11.21 20p11.21 Cystatins, type 2 965 1990-02-06 2016-10-05 1469 ENSG00000170373 OTTHUMG00000032085 uc061vvz.1 M19169 NM_001898 CCDS13160 P01037 CST1 123855 I25.010 +HGNC:2474 CST2 cystatin SA protein-coding gene gene with protein product Approved 20p11.21 20p11.21 cystatin 2 Cystatins, type 2 965 1990-02-06 2016-10-05 1470 ENSG00000170369 OTTHUMG00000032086 uc002wtq.2 M19671 NM_001322 CCDS13161 P09228 CST2 123856 I25.009 +HGNC:45042 CST2P1 cystatin SA pseudogene 1 pseudogene pseudogene Approved 20p11.21 20p11.21 2013-01-25 2013-05-07 101410546 ENSG00000232595 OTTHUMG00000032084 NG_033231 +HGNC:2475 CST3 cystatin C protein-coding gene gene with protein product Approved 20p11.21 20p11.21 cystatin C (amyloid angiopathy and cerebral hemorrhage) Cystatins, type 2 965 1990-02-06 2008-04-15 2016-10-05 1471 ENSG00000101439 OTTHUMG00000032080 uc002wtm.5 NM_000099 CCDS13158 P01034 8486384 MGI:102519 RGD:2432 CST3 604312 120865 I25.004 +HGNC:2476 CST4 cystatin S protein-coding gene gene with protein product Approved 20p11.21 20p11.21 Cystatins, type 2 965 1993-01-20 2016-10-05 1472 ENSG00000101441 OTTHUMG00000032083 uc002wto.2 NM_001899 CCDS13159 P01036 1801729 CST4 123857 I25.008 +HGNC:2477 CST5 cystatin D protein-coding gene gene with protein product Approved 20p11.21 20p11.21 Cystatins, type 2 965 1993-01-20 2015-09-03 1473 ENSG00000170367 OTTHUMG00000032089 uc002wtr.2 NM_001900 CCDS13162 P28325 1939105 MGI:1930004 RGD:1310978 CST5 123858 I25.005 +HGNC:2478 CST6 cystatin E/M protein-coding gene gene with protein product Approved 11q13.1 11q13.1 Cystatins, type 2 965 1996-12-12 2016-10-05 1474 ENSG00000175315 OTTHUMG00000166750 uc001ogr.4 U62800 NM_001323 CCDS8126 Q15828 "9154125|9099741" MGI:1920970 RGD:628799 CST6 601891 I25.006 +HGNC:2479 CST7 cystatin F protein-coding gene gene with protein product Approved 20p11.21 20p11.21 leukocystatin cystatin F (leukocystatin) Cystatins, type 2 965 1998-10-14 2015-12-16 2016-04-25 8530 ENSG00000077984 OTTHUMG00000032108 uc002wtx.2 AF036342 NM_003650 CCDS13165 O76096 "9733783|9632704" MGI:1298217 RGD:1309154 CST7 603253 I25.007 +HGNC:2480 CST8 cystatin 8 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "CRES|CTES5" cystatin 8 (cystatin-related epididymal specific) Cystatins, type 2 965 1999-05-18 2015-12-16 2015-12-16 10047 ENSG00000125815 OTTHUMG00000032071 uc002wth.3 AF059244 XR_937015 CCDS13156 O60676 "7619504|20565543" MGI:107161 RGD:2434 CST8 608683 I25.027 +HGNC:13261 CST9 cystatin 9 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "CLM|CTES7A" testatin Cystatins, type 2 965 2004-11-26 2016-06-10 2016-06-10 128822 ENSG00000173335 OTTHUMG00000032076 uc002wtl.4 AF494536 NM_001008693.1 CCDS33450 Q5W186 20565543 MGI:1340053 CST9 616543 +HGNC:16233 CST9L cystatin 9-like protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "bA218C14.1|CTES7B" cystatin 9 (mouse)-like Cystatins, type 2 965 2001-07-17 2008-03-06 2015-09-03 128821 ENSG00000101435 OTTHUMG00000032073 uc002wtk.5 NM_080610 CCDS13157 Q9H4G1 20565543 MGI:1340053 RGD:1311032 CST9L 616536 +HGNC:39552 CST9LP1 cystatin 9-like pseudogene 1 pseudogene pseudogene Approved 20p11.21 20p11.21 CTES7C Cystatins, type 2 965 2011-02-21 2014-11-19 128820 ENSG00000204662 OTTHUMG00000032079 NG_029361 Q5W188 20565543 CST9LP1 +HGNC:44337 CST9LP2 cystatin 9-like pseudogene 2 pseudogene pseudogene Approved 20p11.21 20p11.21 CTES7D Cystatins, type 2 965 2015-06-04 2015-06-04 106480788 ENSG00000204658 OTTHUMG00000032075 NG_044076 20565543 PGOHUM00000297071 +HGNC:15959 CST11 cystatin 11 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "dJ322G13.6|CTES2" CST8L Cystatins, type 2 965 2001-09-17 2014-11-19 140880 ENSG00000125831 OTTHUMG00000032060 uc002wtf.2 AL096677 NM_130794 "CCDS13154|CCDS13155" Q9H112 20565543 MGI:1925490 RGD:620589 CST11 609731 I25.027 +HGNC:31920 CST12P cystatin 12, pseudogene pseudogene pseudogene Approved 20p11.21 20p11.21 "Cst|E2|Ctes4" Cystatins, type 2 965 2012-08-14 2012-08-14 106478911 ENSG00000226344 OTTHUMG00000032072 NG_044988 "12700194|20565543" MGI:1916612 +HGNC:44335 CST13P cystatin 13, pseudogene pseudogene pseudogene Approved 20p11.21 20p11.21 "CTES6|CSTT" cystatin T Cystatins, type 2 965 2012-08-14 2015-03-19 164380 ENSG00000204663 OTTHUMG00000032078 NR_001279 20565543 MGI:1916544 +HGNC:2481 CSTA cystatin A protein-coding gene gene with protein product Approved 3q21.1 03q21.1 stefin A "STF1|STFA" cystatin A (stefin A) Cystatins, type 1 966 1990-02-06 2015-12-16 2016-10-05 1475 ENSG00000121552 OTTHUMG00000159488 uc003eex.4 NM_005213 CCDS3011 P01040 1674139 "MGI:106196|MGI:106197|MGI:106198|MGI:1924020|MGI:3524930|MGI:3524944|MGI:3644688|MGI:3645124|MGI:3648404|MGI:3696881|MGI:3696883" RGD:6491049 CSTA 184600 289589 I25.001 +HGNC:2482 CSTB cystatin B protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "CST6|PME" stefin B "EPM1|STFB" cystatin B (stefin B) Cystatins, type 1 966 1996-12-12 2015-12-16 2016-10-12 1476 ENSG00000160213 OTTHUMG00000086886 uc002zdr.5 L03558 NM_000100 CCDS13701 P04080 8596935 MGI:109514 RGD:2435 LRG_485|http://www.lrg-sequence.org/LRG/LRG_485 CSTB 601145 120867 I25.003 +HGNC:2483 CSTF1 cleavage stimulation factor subunit 1 protein-coding gene gene with protein product Approved 20q13.2-q13.31 20q13.2-q13.31 "cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kD|cleavage stimulation factor, 3' pre-RNA, subunit 1" WD repeat domain containing 362 1994-12-12 2016-04-05 2016-10-11 1477 ENSG00000101138 OTTHUMG00000032791 uc002xxm.2 NM_001033521 CCDS13452 Q05048 "1358884|11257228" MGI:1914587 RGD:1309267 CSTF1 600369 +HGNC:2484 CSTF2 cleavage stimulation factor subunit 2 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 CstF-64 "cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kD|cleavage stimulation factor, 3' pre-RNA, subunit 2" RNA binding motif containing 725 1994-12-12 2016-04-05 2016-04-05 1478 ENSG00000101811 OTTHUMG00000022709 uc004egh.4 BC017712 NM_001325 "CCDS14473|CCDS78498" P33240 1741396 MGI:1343054 RGD:1596566 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CSTF2 CSTF2 300907 +HGNC:17086 CSTF2T cleavage stimulation factor subunit 2 tau variant protein-coding gene gene with protein product Approved 10q21.1 10q21.1 "DKFZp434C1013|KIAA0689|CstF-64T|tauCstF-64" "cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant|cleavage stimulation factor, 3' pre-RNA, subunit 2, tau variant|cleavage stimulation factor subunit 2, tau variant" RNA binding motif containing 725 2003-10-09 2016-08-11 2016-10-05 23283 ENSG00000177613 OTTHUMG00000018246 uc001jjp.4 AB014589 NM_015235 CCDS7245 Q9H0L4 "12408968|11113135" MGI:1932622 RGD:1310026 CSTF2T 611968 +HGNC:2485 CSTF3 cleavage stimulation factor subunit 3 protein-coding gene gene with protein product Approved 11p13 11p13 CstF-77 "cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kD|cleavage stimulation factor, 3' pre-RNA, subunit 3" 1995-01-16 2016-04-05 2016-04-05 1479 ENSG00000176102 OTTHUMG00000166268 uc001muh.4 U15782 NM_001326 "CCDS7883|CCDS44563|CCDS44564" Q12996 7984242 MGI:1351825 RGD:1305901 CSTF3 600367 +HGNC:27882 CSTF3-AS1 CSTF3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 11p13 11p13 2013-01-23 2013-07-05 338739 ENSG00000247151 OTTHUMG00000166243 uc001muk.4 NR_034027 12477932 +HGNC:15958 CSTL1 cystatin like 1 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "dJ322G13.4|CTES1" cystatin-like 1 Cystatins, type 2 965 2001-09-17 2016-04-05 2016-04-05 128817 ENSG00000125823 OTTHUMG00000032068 uc002wte.3 AL096677 NM_138283 CCDS13153 Q9H114 20565543 MGI:2652834 RGD:1307417 CSTL1 +HGNC:2486 CSTP1 cystatin pseudogene 1 pseudogene pseudogene Approved 20p11.21 20p11.21 dJ850N15.1 1990-02-13 2016-10-05 1480 ENSG00000228476 OTTHUMG00000032091 NG_001020 +HGNC:2487 CSTP2 cystatin pseudogene 2 pseudogene pseudogene Approved 20p11.21 20p11.21 1994-07-04 2015-08-19 1481 ENSG00000277975 OTTHUMG00000187965 AF319563 NG_000839 8179826 PGOHUM00000296924 +HGNC:33267 CT45A1 cancer/testis antigen family 45 member A1 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "CT45-1|CT45.1" cancer/testis antigen CT45-1 2009-03-09 2016-08-04 2016-08-04 541466 ENSG00000268940 OTTHUMG00000188602 uc033ewc.1 AY743709 NM_001017417 CCDS48174 Q5HYN5 15905330 CT45A1 300648 +HGNC:28400 CT45A2 cancer/testis antigen family 45 member A2 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "CT45-2|CT45.2" cancer/testis antigen CT45-2 2009-03-09 2016-08-04 2016-08-04 728911 ENSG00000271449 OTTHUMG00000022490 uc033ewh.2 AY743710 NM_152582 CCDS76031 Q5DJT8 15905330 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CT45A2 CT45A2 300793 +HGNC:33268 CT45A3 cancer/testis antigen family 45 member A3 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "CT45-3|CT45.3|CT45-4|CT45.4" cancer/testis antigen CT45-3 CT45A4 cancer/testis antigen family 45, member A4 2009-03-09 2016-08-04 2016-08-04 441519 ENSG00000269096 OTTHUMG00000022489 uc065bgb.1 AY743711 NM_001017435 CCDS76030 Q8NHU0 15905330 CT45A3 300794 +HGNC:33270 CT45A5 cancer/testis antigen family 45 member A5 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "CT45-5|CT45.5" cancer/testis antigen CT45-5 2009-03-09 2016-08-04 2016-08-04 441521 ENSG00000228836 OTTHUMG00000188603 uc065bgc.1 AY743713 NM_001007551 CCDS35406 P0DMU8 15905330 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CT45A5 CT45A5 300796 +HGNC:33271 CT45A6 cancer/testis antigen family 45 member A6 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "CT45-6|CT45.6" cancer/testis antigen CT45-6 2009-03-09 2016-08-04 2016-08-04 541465 ENSG00000278289 OTTHUMG00000188604 uc033ewf.2 AY743714 NM_001017438 CCDS35407 P0DMU7 15905330 CT45A6 300797 +HGNC:51260 CT45A7 cancer/testis antigen family 45 member A7 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 2014-10-10 2016-08-04 2016-08-04 101060211 ENSG00000273696 OTTHUMG00000022491 XM_003960082 CCDS76032 P0DMV0 +HGNC:51261 CT45A8 cancer/testis antigen family 45 member A8 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 2014-10-10 2016-08-04 2016-08-04 102723737 ENSG00000278085 OTTHUMG00000188605 XM_011531241 CCDS76033 P0DMV1 +HGNC:51262 CT45A9 cancer/testis antigen family 45 member A9 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 2014-10-10 2016-08-04 2016-08-04 102723680 ENSG00000270946 OTTHUMG00000188606 NM_001321271 CCDS76034 P0DMV2 RGD:1592859 +HGNC:51263 CT45A10 cancer/testis antigen family 45 member A10 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 2014-10-10 2016-08-04 2016-08-04 102723631 ENSG00000269586 OTTHUMG00000022494 XM_011531238 CCDS76035 P0DMU9 +HGNC:51336 CT45A11P cancer/testis antigen family 45 member A11, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2014-10-10 2016-08-04 2016-08-04 100129813 ENSG00000230162 OTTHUMG00000022497 NG_022641 +HGNC:33580 CT45B1P cancer/testis antigen family 45 member B1, pseudogene pseudogene pseudogene Approved 5q21.3 05q21.3 2009-03-09 2016-08-04 2016-08-04 100337646 NG_016473 15905330 +HGNC:33282 CT47A1 cancer/testis antigen family 47, member A1 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.1 cancer/testis CT47 family, member 1 2009-03-09 2013-10-15 728096 ENSG00000236371 OTTHUMG00000022311 uc004etn.5 NM_001080146 CCDS35391 Q5JQC4 16382448 CT47A1 300780 +HGNC:33283 CT47A2 cancer/testis antigen family 47, member A2 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.2 cancer/testis CT47 family, member 2 2009-03-09 2013-10-15 728090 ENSG00000242362 OTTHUMG00000022312 uc004etm.4 NM_001080145 CCDS35390 Q5JQC4 16382448 300781 +HGNC:33284 CT47A3 cancer/testis antigen family 47, member A3 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.3 cancer/testis CT47 family, member 3 2009-03-09 2013-10-15 728082 ENSG00000236126 OTTHUMG00000022313 uc004etl.5 NM_001080144 CCDS35389 Q5JQC4 16382448 CT47A3 300782 +HGNC:33285 CT47A4 cancer/testis antigen family 47, member A4 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.4 cancer/testis CT47 family, member 4 2009-03-09 2013-10-15 728075 ENSG00000230594 OTTHUMG00000022314 uc004etk.5 NM_001080143 CCDS35388 Q5JQC4 16382448 CT47A4 300783 +HGNC:33286 CT47A5 cancer/testis antigen family 47, member A5 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.5 cancer/testis CT47 family, member 5 2009-03-09 2013-10-15 728072 ENSG00000237957 OTTHUMG00000022315 uc004eti.4 NM_001080142 CCDS35387 Q5JQC4 16382448 CT47A5 300784 +HGNC:33287 CT47A6 cancer/testis antigen family 47, member A6 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.6 cancer/testis CT47 family, member 6 2009-03-09 2013-10-15 728062 ENSG00000226023 OTTHUMG00000022316 uc065ayf.1 NM_001080141 CCDS35386 Q5JQC4 16382448 CT47A6 300785 +HGNC:33288 CT47A7 cancer/testis antigen family 47, member A7 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.7 cancer/testis CT47 family, member 7 2009-03-09 2013-10-15 653282 ENSG00000228517 OTTHUMG00000022317 uc004ete.4 NM_001080140 CCDS35385 Q5JQC4 16382448 CT47A7 300786 +HGNC:33289 CT47A8 cancer/testis antigen family 47, member A8 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.8 cancer/testis CT47 family, member 8 2009-03-09 2013-10-15 728049 ENSG00000230347 OTTHUMG00000022318 uc065ayc.1 NM_001080139 CCDS35384 Q5JQC4 16382448 CT47A8 300787 +HGNC:33290 CT47A9 cancer/testis antigen family 47, member A9 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.9 cancer/testis CT47 family, member 9 2009-03-09 2013-10-15 728042 ENSG00000226600 OTTHUMG00000022319 uc004etc.4 NM_001080138 CCDS35383 Q5JQC4 16382448 CT47A9 300788 +HGNC:33291 CT47A10 cancer/testis antigen family 47, member A10 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.10 cancer/testis CT47 family, member 10 2009-03-09 2013-10-15 728036 ENSG00000224089 OTTHUMG00000022309 uc004etb.5 NM_001080137 CCDS35382 Q5JQC4 16382448 CT47A10 300789 +HGNC:27397 CT47A11 cancer/testis antigen family 47, member A11 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.11 cancer/testis CT47 family, member 11 2009-03-09 2014-11-19 255313 ENSG00000226929 OTTHUMG00000022310 uc004eta.4 NM_173571 CCDS35381 Q5JQC4 16382448 300592 +HGNC:33292 CT47A12 cancer/testis antigen family 47, member A12 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.12 cancer/testis CT47 family, member 12 2011-10-07 2011-10-07 100507170 ENSG00000226685 OTTHUMG00000188843 uc065aye.1 XM_017029190 CCDS56607 Q5JQC4 16382448 CT47A12 +HGNC:33293 CT47B1 cancer/testis antigen family 47, member B1 protein-coding gene gene with protein product Approved Xq24 Xq24 CT47.13 cancer/testis CT47 family, member 13 2009-03-09 2011-03-24 2014-05-06 643311 ENSG00000236446 OTTHUMG00000187483 uc011muc.3 NM_001145718 CCDS48161 P0C2W7 16382448 RGD:7519078 CT47B1 300790 +HGNC:26047 CT55 cancer/testis antigen 55 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 FLJ20527 CXorf48 chromosome X open reading frame 48 2004-11-08 2013-12-10 2013-12-10 2015-09-03 54967 ENSG00000169551 OTTHUMG00000022473 AF520814 NM_017863 "CCDS14647|CCDS35400" Q8WUE5 12477932 RGD:2322455 +HGNC:27286 CT62 cancer/testis antigen 62 protein-coding gene gene with protein product Approved 15q23 15q23 2009-08-17 2011-03-09 196993 ENSG00000225362 OTTHUMG00000172836 uc002ata.3 "BC039359|AL080151" NM_001102658 CCDS45295 P0C5K7 15905330 CT62 +HGNC:33494 CT83 cancer/testis antigen 83 protein-coding gene gene with protein product Approved Xq23 Xq23 "KK-LC-1|FLJ20611|FLJ22913" Kita-kyushu lung cancer antigen 1 CXorf61 chromosome X open reading frame 61 2007-06-20 2013-12-10 2013-12-10 2014-11-19 203413 ENSG00000204019 OTTHUMG00000022244 BC062223 NM_001017978 CCDS35372 Q5H943 16651449 300625 +HGNC:2489 CTAA1 cataract, anterior polar 1 phenotype phenotype only Approved 14q24-qter 14q24-qter 1994-01-05 2008-05-14 1483 1497515 115650 +HGNC:2490 CTAA2 cataract, anterior polar 2 phenotype phenotype only Approved 17p13 17p13 1994-01-05 2004-11-22 1484 885266 601202 +HGNC:24198 CTAG1A cancer/testis antigen 1A protein-coding gene gene with protein product Approved Xq28 Xq28 "LAGE2A|ESO1" 2004-06-15 2015-09-03 246100 ENSG00000268651 OTTHUMG00000024238 uc004fme.3 NM_139250 CCDS44025 P78358 "11709543|10523621" 300657 +HGNC:2491 CTAG1B cancer/testis antigen 1B protein-coding gene gene with protein product Approved Xq28 Xq28 "NY-ESO-1|LAGE2B|LAGE2A|ESO1|CT6.1" "CTAG|CTAG1" cancer/testis antigen 1 1998-06-22 2004-06-16 2004-06-15 2015-09-03 1485 ENSG00000184033 OTTHUMG00000024232 uc004fmf.1 U87459 NM_001327 CCDS14758 P78358 "9605863|11709543" CTAG1B 300156 +HGNC:2492 CTAG2 cancer/testis antigen 2 protein-coding gene gene with protein product Approved Xq28 Xq28 "LAGE-1|CAMEL|LAGE1|ESO2|MGC3803|MGC138724|CT6.2a|CT6.2b|LAGE-1a|LAGE-1b" "CTL-recognized antigen on melanoma|LAGE-1a protein|cancer/testis antigen family 6, member 2a|cancer/testis antigen family 6, member 2b" 2000-08-22 2015-09-03 30848 ENSG00000126890 OTTHUMG00000024239 uc004fmh.3 AJ012833 NM_020994 "CCDS14759|CCDS35455" O75638 "9626360|10399963" RGD:1561702 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CTAG2 CTAG2 300396 +HGNC:24346 CTAGE1 cutaneous T-cell lymphoma-associated antigen 1 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "cTAGE-1|cTAGE-2|CTAGE|CT21.1|CT21.2" "cutaneous T-cell lymphoma-associated antigen 1|cutaneous T-cell lymphoma-associated antigen 2|cancer/testis antigen family 21, member 1|cancer/testis antigen family 21, member 2" CTAGE family 907 2004-05-27 2015-09-02 64693 ENSG00000212710 OTTHUMG00000165867 uc002ktv.2 AF177229 "NM_022663|NM_172241" CCDS45837 "Q96RT6|Q9HC47" "11149944|12839582" CTAGE1 608856 +HGNC:24348 CTAGE3P CTAGE family member 3, pseudogene pseudogene pseudogene Approved 13q14.3 13q14.3 cTAGE-3 cutaneous T-cell lymphoma-associated antigen 3 CTAGE3 "CTAGE family, member 3|CTAGE family, member 3, pseudogene" CTAGE family 907 2004-05-27 2010-05-26 2015-11-18 2016-10-05 220112 ENSG00000232872 OTTHUMG00000016951 AF338231 NG_006514 Q8IX95 "12839582|11149944" 608857 PGOHUM00000248402 +HGNC:24772 CTAGE4 CTAGE family member 4 protein-coding gene gene with protein product Approved 7q35 07q35 "FLJ43692|cTAGE-4" cutaneous T-cell lymphoma-associated antigen 4 CTAGE family, member 4 CTAGE family 907 2004-05-27 2015-11-18 2015-11-18 100128553 ENSG00000225932 OTTHUMG00000157997 uc010lpc.5 AF338232 NM_198495 CCDS55176 Q8IX94 "12839582|11149944" CTAGE4 608910 +HGNC:7057 CTAGE5 CTAGE family member 5, ER export factor protein-coding gene gene with protein product Approved 14q21.1 14q21.1 "MEA6|cTAGE-5A|cTAGE-5B|cTAGE-5C|cTAGE-5D|MGEA11" "MGEA|MGEA6" "meningioma expressed antigen 6 (coiled-coil proline-rich)|CTAGE family, member 5|CTAGE family member 5" CTAGE family 907 1998-01-07 2004-08-26 2016-06-22 2016-06-22 4253 ENSG00000150527 OTTHUMG00000140258 uc001wvi.4 U94780 NM_005930 "CCDS9673|CCDS9674|CCDS9675|CCDS9676|CCDS58316|CCDS58317" O15320 "9356211|11149944|21525241" MGI:1346056 RGD:6488546 CTAGE5 +HGNC:28644 CTAGE6 CTAGE family member 6 protein-coding gene gene with protein product Approved 7q35 07q35 MGC41943 CTAGE6P "CTAGE family, member 6, pseudogene|CTAGE family, member 6" CTAGE family 907 2004-05-27 2013-02-25 2015-11-18 2015-11-18 340307 ENSG00000271321 OTTHUMG00000157770 uc003wdk.5 BC043153 NM_178561 CCDS64790 Q86UF2 12477932 +HGNC:25111 CTAGE7P CTAGE family member 7, pseudogene pseudogene pseudogene Approved 10q26.3 10q26.3 "bA500G10.2|MGC33437|rcCTAGE5" meningioma expressed antigen 6 (coiled-coil proline-rich) pseudogene "CTAGEP|CTAGE7" "CTAGE family pseudogene|CTAGE family, member 7|CTAGE family, member 7, pseudogene" CTAGE family 907 2004-05-27 2010-05-26 2015-11-18 2015-11-18 119437 ENSG00000233122 OTTHUMG00000019269 NG_006973 16201836 PGOHUM00000238968 +HGNC:37294 CTAGE8 CTAGE family member 8 protein-coding gene gene with protein product Approved 7q35 07q35 CTAGE family, member 8 CTAGE family 907 2009-10-16 2015-11-18 2015-11-18 100142659 ENSG00000244693 OTTHUMG00000158009 uc010lpe.5 AK292236 NM_001278507 CCDS64791 P0CG41 CTAGE8 +HGNC:37275 CTAGE9 CTAGE family member 9 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 CTAGE family, member 9 CTAGE family 907 2009-10-16 2015-11-18 2015-11-18 643854 ENSG00000236761 OTTHUMG00000047966 uc011ece.3 NM_001145659 CCDS47475 A4FU28 CTAGE9 +HGNC:37288 CTAGE10P CTAGE family member 10, pseudogene pseudogene pseudogene Approved 13q14.2 13q14.2 CTAGE family, member 10, pseudogene CTAGE family 907 2010-10-12 2015-11-18 2016-10-05 220429 ENSG00000181358 OTTHUMG00000016925 NR_003268 PGOHUM00000248591 +HGNC:37293 CTAGE11P CTAGE family member 11, pseudogene pseudogene pseudogene Approved 13q22.2 13q22.2 CTAGE family, member 11, pseudogene CTAGE family 907 2010-10-12 2015-11-18 2015-11-18 647288 ENSG00000214249 OTTHUMG00000017085 NR_027466 PGOHUM00000248439 +HGNC:37297 CTAGE12P CTAGE family member 12, pseudogene pseudogene pseudogene Approved 9p21.2 09p21.2 CTAGE family, member 12, pseudogene CTAGE family 907 2010-10-12 2015-11-18 2015-11-18 392298 ENSG00000215441 OTTHUMG00000019718 NG_028957 PGOHUM00000261940 +HGNC:37298 CTAGE13P CTAGE family member 13, pseudogene pseudogene pseudogene Approved 6q27 06q27 CTAGE family, member 13, pseudogene CTAGE family 907 2010-10-12 2015-11-18 2015-11-18 100421638 ENSG00000230711 OTTHUMG00000016044 NG_025892 PGOHUM00000243460 +HGNC:37299 CTAGE14P CTAGE family member 14, pseudogene pseudogene pseudogene Approved 2q24.3 02q24.3 CTAGE family, member 14, pseudogene CTAGE family 907 2010-10-12 2015-11-18 2015-11-18 401018 ENSG00000214211 OTTHUMG00000154029 NG_021536 PGOHUM00000240415 +HGNC:37295 CTAGE15 CTAGE family member 15 protein-coding gene gene with protein product Approved 7q35 07q35 CTAGE15P "CTAGE family, member 15, pseudogene|CTAGE family, member 15" CTAGE family 907 2010-10-12 2013-02-25 2015-11-18 2015-11-18 441294 ENSG00000271079 OTTHUMG00000153233 uc011kth.3 NM_001008747 CCDS64788 A4D2H0 +HGNC:41967 CTAGE16P CTAGE family member 16, pseudogene pseudogene pseudogene Approved 13q21.1 13q21.1 CTAGE family, member 16, pseudogene CTAGE family 907 2011-05-24 2015-11-18 2015-11-18 341689 ENSG00000214335 OTTHUMG00000016998 NG_022898 PGOHUM00000248609 +HGNC:2494 CTBP1 C-terminal binding protein 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 BARS brefeldin A-ribosylated substrate 1997-08-22 2016-10-05 1487 ENSG00000159692 OTTHUMG00000089259 uc003gcv.2 U37408 NM_001328 "CCDS3348|CCDS43203" Q13363 9479502 MGI:1201685 RGD:2441 CTBP1 602618 +HGNC:48337 CTBP1-AS CTBP1 antisense RNA non-coding RNA RNA, long non-coding Approved 4p16.3 04p16.3 PCAT10 prostate cancer associated transcript 10 Long non-coding RNAs 788 2013-06-14 2015-01-29 285463 ENSG00000280927 OTTHUMG00000189534 "AX747592|AK092548" NR_104331 "23644382|25552498" +HGNC:28307 CTBP1-AS2 CTBP1 antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 4p16.3 04p16.3 MGC21675 "C4orf42|CTBP1-AS1" "chromosome 4 open reading frame 42|CTBP1 antisense RNA 1 (head to head)" 2007-12-19 2013-06-14 2013-06-14 2014-11-19 92070 ENSG00000196810 OTTHUMG00000160166 AK056133 NR_033339 12477932 +HGNC:2495 CTBP2 C-terminal binding protein 2 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 ribeye 1997-08-22 2015-09-11 1488 ENSG00000175029 OTTHUMG00000019224 uc009yal.4 AF016507 NM_001083914 "CCDS7643|CCDS7644" P56545 "9479502|11864595" MGI:1201686 RGD:68372 CTBP2 602619 +HGNC:23940 CTBP2P1 C-terminal binding protein 2 pseudogene 1 pseudogene pseudogene Approved Yq12 Yq12 2010-02-16 2014-11-18 352905 ENSG00000235857 OTTHUMG00000036770 NG_002808 12815422 PGOHUM00000234105 +HGNC:45194 CTBP2P2 C-terminal binding protein 2 pseudogene 2 pseudogene pseudogene Approved 10q23.33 10q23.33 2013-03-06 2013-03-06 100130970 ENSG00000235746 OTTHUMG00000018790 NG_022155 PGOHUM00000238591 +HGNC:45195 CTBP2P3 C-terminal binding protein 2 pseudogene 3 pseudogene pseudogene Approved 18q21.32 18q21.32 2013-03-06 2013-03-06 220147 ENSG00000267153 OTTHUMG00000179961 NG_022494 PGOHUM00000235082 +HGNC:45196 CTBP2P4 C-terminal binding protein 2 pseudogene 4 pseudogene pseudogene Approved 5q15 05q15 2013-03-06 2013-03-06 642909 ENSG00000251102 OTTHUMG00000162748 NG_021892 PGOHUM00000235708 +HGNC:45197 CTBP2P5 C-terminal binding protein 2 pseudogene 5 pseudogene pseudogene Approved 2p16.3 02p16.3 2013-03-07 2013-03-07 646936 ENSG00000214602 OTTHUMG00000151768 NG_021499 PGOHUM00000240038 +HGNC:45198 CTBP2P6 C-terminal binding protein 2 pseudogene 6 pseudogene pseudogene Approved 11p11.2 11p11.2 2013-03-07 2013-03-07 120449 ENSG00000213697 OTTHUMG00000166401 NG_021815 PGOHUM00000242652 +HGNC:45199 CTBP2P7 C-terminal binding protein 2 pseudogene 7 pseudogene pseudogene Approved 19q13.12 19q13.12 2013-03-07 2013-03-07 401914 ENSG00000267091 OTTHUMG00000180713 NG_021748 PGOHUM00000234295 +HGNC:45200 CTBP2P8 C-terminal binding protein 2 pseudogene 8 pseudogene pseudogene Approved 1p31.3 01p31.3 2013-03-07 2013-03-07 100420253 ENSG00000234383 OTTHUMG00000009154 NG_026947 PGOHUM00000244063 +HGNC:2496 CTBS chitobiase protein-coding gene gene with protein product Approved 1p22.3 01p22.3 CTB chitobiase, di-N-acetyl- Chitinases 816 1992-07-21 2016-02-29 2016-10-05 1486 ENSG00000117151 OTTHUMG00000009922 uc001dka.3 M95767 NM_004388 CCDS698 Q01459 "1549114|7606925" MGI:1921495 RGD:621338 CTBS 600873 3.2.1.- +HGNC:26169 CTC1 CST telomere replication complex component 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "FLJ22170|AAF132" "conserved telomere maintenance component 1|alpha accessory factor 132|conserved telomere capping protein 1" C17orf68 "tmp494178|chromosome 17 open reading frame 68|CST telomere maintenance complex component 1" CST complex 1343 2005-12-16 2011-02-21 2016-10-04 2016-10-04 80169 ENSG00000178971 OTTHUMG00000178443 uc002gkq.5 AL831955 NM_025099 CCDS42259 Q2NKJ3 "19854130|19854131" MGI:1916214 RGD:1563106 CTC1 613129 317684 +HGNC:13723 CTCF CCCTC-binding factor protein-coding gene gene with protein product Approved 16q22.1 16q22.1 11 zinc finger transcriptional repressor CCCTC-binding factor (zinc finger protein) Zinc fingers C2H2-type 28 2000-10-20 2016-02-12 2016-02-12 10664 ENSG00000102974 OTTHUMG00000137539 uc002etl.4 U25435 NM_006565 "CCDS10841|CCDS54029" P49711 "8649389|18550811" MGI:109447 RGD:621344 CTCF 604167 365130 +HGNC:16234 CTCFL CCCTC-binding factor like protein-coding gene gene with protein product Approved 20q13.31 20q13.31 "dJ579F20.2|BORIS|CT27" "cancer/testis antigen 27|transcriptional repressor CTCFL" CCCTC-binding factor (zinc finger protein)-like Zinc fingers C2H2-type 28 2001-07-17 2016-02-12 2016-08-25 140690 ENSG00000124092 OTTHUMG00000032829 uc010gjd.2 NM_080618 "CCDS13459|CCDS58776|CCDS58777|CCDS58778|CCDS58779|CCDS58780|CCDS58781|CCDS58782|CCDS68161|CCDS68162|CCDS68163|CCDS68164" Q8NI51 MGI:3652571 RGD:2321501 CTCFL 607022 +HGNC:2497 CTD Coats disease phenotype phenotype only Approved reserved reserved 1994-01-05 2007-06-11 1283 "11884883|10484772" 300216 +HGNC:19085 CTDNEP1 CTD nuclear envelope phosphatase 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "HSA011916|NET56" C-terminal domain nuclear envelope phosphatase 1 DULLARD dullard homolog (Xenopus laevis) CTD family phosphatases 1041 2003-05-22 2010-10-27 2010-10-27 2016-10-05 23399 ENSG00000175826 OTTHUMG00000102180 uc060aky.1 AJ011916 NM_015343 CCDS11093 O95476 "12083771|17141153" MGI:1914431 RGD:1310172 CTDNEP1 610684 +HGNC:2498 CTDP1 CTD phosphatase subunit 1 protein-coding gene gene with protein product Approved 18q23 18q23 FCP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 CTD family phosphatases 1041 1999-02-09 2015-11-06 2016-10-12 9150 ENSG00000060069 OTTHUMG00000132920 uc002lnh.3 AF081287 NM_004715 "CCDS12017|CCDS12018|CCDS74239" Q9Y5B0 "9405607|9765293" MGI:1926953 RGD:1311755 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_236|http://www.lrg-sequence.org/LRG/LRG_236" CTDP1 604927 120873 +HGNC:21614 CTDSP1 CTD small phosphatase 1 protein-coding gene gene with protein product Approved 2q35 02q35 "NLIIF|SCP1" "nuclear LIM interactor-interacting factor|small CTD phosphatase 1" CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1 CTD family phosphatases 1041 2003-10-27 2015-11-06 2015-11-06 58190 ENSG00000144579 OTTHUMG00000133109 uc002vhy.3 AF229162 "NM_182642|NM_021198" "CCDS2416|CCDS56166" Q9GZU7 "11950066|12721286" MGI:2654470 RGD:1305629 CTDSP1 605323 +HGNC:17077 CTDSP2 CTD small phosphatase 2 protein-coding gene gene with protein product Approved 12q14.1 12q14.1 "OS4|SCP2|PSR2" "conserved gene amplified in osteosarcoma|nuclear LIM interactor-interacting factor 2|NLI-interacting factor 2|small CTD phosphatase 2" CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 CTD family phosphatases 1041 2003-10-27 2015-11-06 2015-11-06 10106 ENSG00000175215 OTTHUMG00000170483 uc001sqm.4 AF000152 NM_005730 CCDS41801 O14595 "9315096|12721286" MGI:1098748 RGD:2319209 CTDSP2 608711 +HGNC:16890 CTDSPL CTD small phosphatase like protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "HYA22|SCP3|PSR1|RBSP3" "small CTD phosphatase 3|HYA22 protein|RB protein serine phosphatase from chromosome 3" C3orf8 "chromosome 3 open reading frame 8|CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like" CTD family phosphatases 1041 2003-04-03 2003-10-29 2015-11-06 2016-10-05 10217 ENSG00000144677 OTTHUMG00000155942 uc003chg.4 D88153 NM_005808 "CCDS33734|CCDS33735" O15194 "9179494|12543795" MGI:1916524 RGD:1304841 CTDSPL 608592 3.1.3.16 +HGNC:26936 CTDSPL2 CTD small phosphatase like 2 protein-coding gene gene with protein product Approved 15q15.3-q21.1 15q15.3-q21.1 "HSPC129|FLJ10523" CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2 CTD family phosphatases 1041 2005-09-02 2015-11-06 2016-10-11 51496 ENSG00000137770 OTTHUMG00000131159 uc001ztr.4 AF161478 NM_016396 CCDS10110 Q05D32 MGI:1196405 RGD:1309219 CTDSPL2 +HGNC:2499 CTF1 cardiotrophin 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "CT-1|CT1" Interleukin 6 cytokine family 1264 1995-05-01 2016-10-12 1489 ENSG00000150281 OTTHUMG00000132413 uc002dzw.3 U43030 NM_001330 "CCDS10694|CCDS45464" Q16619 8833032 MGI:105115 RGD:2442 LRG_408|http://www.lrg-sequence.org/LRG/LRG_408 CTF1 600435 +HGNC:33173 CTF2P cardiotrophin 2, pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 NP neuropoietin 2006-11-10 2009-12-08 2014-11-19 100289419 ENSG00000230447 OTTHUMG00000154385 NG_005797 15051883 MGI:2684607 +HGNC:2500 CTGF connective tissue growth factor protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "IGFBP8|CCN2" CYR61/CTGF/NOV matricellular proteins 1046 1992-12-01 2014-11-19 1490 ENSG00000118523 OTTHUMG00000015573 uc003qcz.4 X78947 NM_001901 CCDS5151 P29279 1654338 MGI:95537 RGD:621392 CTGF 121009 165904 +HGNC:23461 CTGLF8P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-11-17 +HGNC:2501 CTH cystathionine gamma-lyase protein-coding gene gene with protein product Approved 1p31.1 01p31.1 cystathionase (cystathionine gamma-lyase) 1986-01-01 2014-06-24 2015-08-24 1491 ENSG00000116761 OTTHUMG00000009352 uc001dfd.4 BC015807 NM_001902 "CCDS650|CCDS651|CCDS53333" P32929 1339280 MGI:1339968 RGD:2443 CTH 607657 120876 objectId:1444 4.4.1.1 +HGNC:2502 CTHM cono-truncal heart malformation phenotype phenotype only Approved 22q11 22q11 1995-01-26 2011-02-11 +HGNC:18831 CTHRC1 collagen triple helix repeat containing 1 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 2002-07-22 2008-08-07 115908 ENSG00000164932 OTTHUMG00000164887 uc003ylk.5 BC014245 NM_138455 "CCDS6299|CCDS59110" Q96CG8 15618538 MGI:1915838 RGD:628801 CTHRC1 610635 297632 +HGNC:50463 CTHRC1P1 collagen triple helix repeat containing 1 pseudogene 1 pseudogene pseudogene Approved Xq21.1 Xq21.1 2014-04-30 2014-04-30 106480299 ENSG00000271005 OTTHUMG00000185045 NG_044248 PGOHUM00000241411 +HGNC:23925 CTIF cap binding complex dependent translation initiation factor protein-coding gene gene with protein product Approved 18q21.1 18q21.1 KIAA0427 "KIAA0427|CBP80/20-dependent translation initiation factor" 2003-12-15 2011-01-20 2016-06-09 2016-06-09 9811 ENSG00000134030 OTTHUMG00000132656 uc002ldc.4 AB007887 NM_014772 "CCDS11935|CCDS45864" O43310 "9455477|19648179" MGI:2685518 RGD:1311887 CTIF 613178 +HGNC:2505 CTLA4 cytotoxic T-lymphocyte associated protein 4 protein-coding gene gene with protein product Approved 2q33.2 02q33.2 "CD152|CD|GSE" "CELIAC3|IDDM12" "celiac disease 3|insulin-dependent diabetes mellitus 12" "CD molecules|V-set domain containing" "471|590" 1989-05-25 2016-01-13 2016-10-05 1493 ENSG00000163599 OTTHUMG00000132877 uc002vak.3 NM_005214 "CCDS2362|CCDS42803" P16410 "3220103|8817351" MGI:88556 RGD:61975 CTLA4 123890 120878 objectId:2743 CD152 +HGNC:2509 CTNNA1 catenin alpha 1 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 CAP102 "catenin (cadherin-associated protein), alpha 1 (102kD)|catenin (cadherin-associated protein), alpha 1, 102kDa|catenin (cadherin-associated protein), alpha 1" 1993-07-13 2015-11-19 2015-11-19 1495 ENSG00000044115 OTTHUMG00000163502 uc003ldh.4 D13866 NM_001903 "CCDS34243|CCDS75315|CCDS78064" P35221 1924379 MGI:88274 RGD:1359485 CTNNA1 116805 436845 +HGNC:2513 CTNNA1P1 catenin alpha 1 pseudogene 1 pseudogene pseudogene Approved 5q22.3 05q22.3 CTNNAP1 "catenin (cadherin-associated protein), alpha pseudogene 1|catenin (cadherin-associated protein), alpha 1 pseudogene 1" 1995-01-10 2009-12-02 2015-11-19 2016-10-05 1498 ENSG00000249026 OTTHUMG00000162908 Z37994 NG_001110 7601473 PGOHUM00000300721 +HGNC:2510 CTNNA2 catenin alpha 2 protein-coding gene gene with protein product Approved 2p12 02p12 "CAP-R|CT114" "cadherin-associated protein, related|cancer/testis antigen 114" catenin (cadherin-associated protein), alpha 2 1993-07-13 2015-11-19 2016-10-05 1496 ENSG00000066032 OTTHUMG00000152903 uc010yse.3 NM_004389 "CCDS42703|CCDS62944|CCDS62945|CCDS74531|CCDS54371" P26232 8432524 MGI:88275 RGD:1305060 CTNNA2 114025 +HGNC:2511 CTNNA3 catenin alpha 3 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "VR22|MGC26194" catenin (cadherin-associated protein), alpha 3 2000-03-29 2015-11-19 2016-10-05 29119 ENSG00000183230 OTTHUMG00000018334 uc001jmw.3 AF091606 NM_013266 CCDS7269 Q9UI47 "12596047|11590244" MGI:2661445 RGD:1562230 CTNNA3 607667 390869 +HGNC:2512 CTNNAL1 catenin alpha like 1 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "CLLP|alpha-CATU" "alpha-catulin|alpha2-catulin" "catenin (cadherin-associated protein), alpha-like 1|catenin alpha-like 1" 1998-12-09 2016-03-15 2016-10-05 8727 ENSG00000119326 OTTHUMG00000020466 uc004bdo.3 AF030233 NM_003798 "CCDS6775|CCDS69638" Q9UBT7 9806841 MGI:1859649 RGD:1311434 CTNNAL1 604785 +HGNC:2514 CTNNB1 catenin beta 1 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "beta-catenin|armadillo" CTNNB "catenin (cadherin-associated protein), beta 1 (88kD)|catenin (cadherin-associated protein), beta 1, 88kDa|catenin (cadherin-associated protein), beta 1" Armadillo repeat containing 409 1993-07-13 2015-11-19 2016-10-05 1499 ENSG00000168036 OTTHUMG00000131393 uc010hia.2 X87838 NM_001098210 CCDS2694 P35222 7829088 MGI:88276 RGD:70487 CTNNB1 116806 120881 +HGNC:16913 CTNNBIP1 catenin beta interacting protein 1 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "ICAT|MGC15093" "beta-catenin-interacting protein ICAT|inhibitor of beta-catenin and Tcf-4" "catenin, beta-interacting protein 1|catenin, beta interacting protein 1" 2001-11-14 2015-11-19 2015-11-19 56998 ENSG00000178585 OTTHUMG00000001796 uc001aqk.2 AB021262 NM_020248 CCDS106 Q9NSA3 10898789 MGI:1915756 RGD:1562749 CTNNBIP1 607758 +HGNC:15879 CTNNBL1 catenin beta like 1 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "FLJ21108|P14L|P14|NAP|NYD-SP19" nuclear associated protein C20orf33 "chromosome 20 open reading frame 33|catenin, beta like 1" 2001-06-21 2002-05-31 2015-11-19 2016-10-05 56259 ENSG00000132792 OTTHUMG00000032428 uc061wwh.1 AL023804 NM_030877 "CCDS13298|CCDS63269" Q8WYA6 "12659813|21385873" MGI:1913892 RGD:1563558 CTNNBL1 611537 +HGNC:2515 CTNND1 catenin delta 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "KIAA0384|p120|p120cas|p120ctn" CTNND catenin (cadherin-associated protein), delta 1 Armadillo repeat containing 409 1995-09-18 2015-11-19 2015-11-19 1500 ENSG00000198561 OTTHUMG00000167272 uc021qjk.2 AB002382 NM_001331 "CCDS44604|CCDS44605|CCDS44606|CCDS44607|CCDS44608|CCDS44609|CCDS53632|CCDS53633|CCDS53634|CCDS55763|CCDS55764|CCDS55765|CCDS55766|CCDS55767|CCDS73290" O60716 8808291 MGI:105100 RGD:1305643 CTNND1 601045 +HGNC:2516 CTNND2 catenin delta 2 protein-coding gene gene with protein product Approved 5p15.2 05p15.2 "NPRAP|GT24" neural plakophilin-related arm-repeat protein "catenin (cadherin-associated protein), delta 2 (neural plakophilin-related arm-repeat protein)|catenin (cadherin-associated protein), delta 2" Armadillo repeat containing 409 1997-06-24 2015-11-19 2015-11-19 1501 ENSG00000169862 OTTHUMG00000090511 uc003jfa.3 U52828 NM_001332 "CCDS3881|CCDS75227|CCDS75228" Q9UQB3 "9342840|9223106" MGI:1195966 RGD:620734 CTNND2 604275 159484 +HGNC:2518 CTNS cystinosin, lysosomal cystine transporter protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "CTNS-LSB|PQLC4" cystinosis, nephropathic 1998-07-15 2011-06-07 2016-10-05 1497 ENSG00000040531 OTTHUMG00000090693 uc002fwb.4 AJ222967 NM_004937 "CCDS11031|CCDS32530" O60931 "9537412|15128704" MGI:1932872 RGD:1308466 CTNS 606272 120884 +HGNC:30997 CTPL1 cataract, pulverulent (autosomal recessive, early-onset) phenotype phenotype only Approved 9q13-q22 09q13-q22 CAAR 2003-12-22 2011-02-11 81863 11179024 605749 +HGNC:2519 CTPS1 CTP synthase 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 CTPS CTP synthase 1991-07-12 2012-05-02 2012-05-02 2016-10-05 1503 ENSG00000171793 OTTHUMG00000005712 uc001cgk.5 BC009408 NM_001905 CCDS459 P17812 1783378 MGI:1858304 RGD:1311060 CTPS1 123860 431591 6.3.4.2 +HGNC:2520 CTPS2 CTP synthase 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 CTP synthase II 2000-09-01 2012-05-02 2016-10-05 56474 ENSG00000047230 OTTHUMG00000021193 uc004cxm.5 AF086422 NM_019857 CCDS14175 Q9NRF8 10899599 MGI:1933185 RGD:1563369 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CTPS2 CTPS2 300380 6.3.4.2 +HGNC:16850 CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "KIAA0155|TSBP|p150TSP" SH2BP1 "SH2 domain binding protein 1 (tetratricopeptide repeat containing)|Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" "Tetratricopeptide repeat domain containing|Paf1/RNA polymerase II complex " "769|1029" 2003-03-14 2006-05-22 2015-07-03 2016-10-05 9646 ENSG00000198730 OTTHUMG00000165789 uc001mja.4 D63875 NM_014633 CCDS7805 Q6PD62 "8590280|8636124" MGI:109345 RGD:1311097 CTR9 609366 +HGNC:2521 CTRB1 chymotrypsinogen B1 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 CTRB 1986-01-01 2014-11-19 1504 ENSG00000168925 OTTHUMG00000159272 uc002fds.4 NM_001906 CCDS32490 P17538 "2917002|8186414" MGI:88559 CTRB1 118890 S01.152 3.4.21.1 +HGNC:2522 CTRB2 chymotrypsinogen B2 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 1992-12-08 2016-10-05 440387 ENSG00000168928 OTTHUMG00000159271 uc002fdr.4 "M24400|AK131056" NM_001025200 CCDS32489 Q6GPI1 "2917002|8186414" MGI:88559 RGD:2444 CTRB2 3.4.21.1 +HGNC:2523 CTRC chymotrypsin C protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "CLCR|ELA4" "elastase 4|caldecrin" chymotrypsin C (caldecrin) 2000-06-08 2015-11-30 2015-11-30 11330 ENSG00000162438 OTTHUMG00000002255 uc001awi.2 BC015118 NM_007272 CCDS156 Q99895 8635596 MGI:1923951 RGD:1308379 CTRC 601405 139109 S01.157 objectId:2341 3.4.21.2 +HGNC:2524 CTRL chymotrypsin like protein-coding gene gene with protein product Approved 16q22.1 16q22.1 chymotrypsin-like 1993-07-29 2016-03-17 2016-03-17 1506 ENSG00000141086 OTTHUMG00000137552 uc002euw.4 NM_001907 CCDS10852 P40313 8268911 MGI:88558 RGD:621501 CTRL 118888 S01.256 objectId:2342 +HGNC:9251 CTSA cathepsin A protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "carboxypeptidase C|lysosomal protective protein|carboxypeptidase-L|carboxypeptidase Y-like kininase|deamidase|lysosomal carboxypeptidase A|urinary kininase" "GSL|PPGB" protective protein for beta-galactosidase (galactosialidosis) Cathepsins 470 1986-01-01 2006-12-05 2006-12-05 2014-11-19 5476 ENSG00000064601 OTTHUMG00000033078 uc002xqh.4 M22960 NM_000308 "CCDS13385|CCDS46609|CCDS54467" P10619 2071143 MGI:97748 RGD:1309070 CTSA 613111 120888 S10.002 objectId:1581 3.4.16.5 +HGNC:2527 CTSB cathepsin B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 Cathepsins 470 2001-06-22 2014-11-19 1508 ENSG00000164733 OTTHUMG00000090799 uc003wuq.4 M14221 NM_147780 CCDS5986 P07858 "8112600|3463996" MGI:88561 RGD:621509 CTSB 116810 C01.060 objectId:2343 3.4.22.1 +HGNC:2528 CTSC cathepsin C protein-coding gene gene with protein product Approved 11q14.2 11q14.2 DPP1 dipeptidyl peptidase 1 "PLS|PALS" Cathepsins 470 1995-11-08 2016-10-12 1075 ENSG00000109861 OTTHUMG00000167290 uc001pck.5 AK223038 NM_001814 "CCDS8282|CCDS31654|CCDS44693" P53634 "7649281|9092576" MGI:109553 RGD:2445 "CTSCbase: Mutation registry for Papillon-Lefevre syndrome|http://structure.bmc.lu.se/idbase/CTSCbase/|LRG_50|http://www.lrg-sequence.org/LRG/LRG_50" CTSC 602365 120892 C01.070 objectId:2344 3.4.14.1 +HGNC:2529 CTSD cathepsin D protein-coding gene gene with protein product Approved 11p15.5 11p15.5 CLN10 ceroid-lipofuscinosis, neuronal 10 CPSD cathepsin D (lysosomal aspartyl protease) Cathepsins 470 1986-01-01 2006-12-05 2014-11-18 1509 ENSG00000117984 OTTHUMG00000044760 uc001luc.2 M11233 NM_001909 CCDS7725 P07339 3927292 MGI:88562 RGD:621511 Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/ CTSD 116840 159489 A01.009 objectId:2345 3.4.23.5 +HGNC:2530 CTSE cathepsin E protein-coding gene gene with protein product Approved 1q32.1 01q32.1 Cathepsins 470 1989-05-19 2015-09-11 1510 ENSG00000196188 OTTHUMG00000036121 uc001hdu.3 BC042537 NM_001910 "CCDS73012|CCDS73013" P14091 "2369841|2674141" MGI:107361 RGD:2446 CTSE 116890 A01.010 objectId:2346 3.4.23.5 +HGNC:2531 CTSF cathepsin F protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "CATSF|CLN13" Cathepsins 470 1998-12-17 2012-02-29 8722 ENSG00000174080 OTTHUMG00000167090 uc001oip.4 AF071749 NM_003793 CCDS8144 Q9UBX1 "9822672|10318784" MGI:1861434 RGD:1308181 CTSF 603539 356180 C01.018 objectId:2347 +HGNC:2532 CTSG cathepsin G protein-coding gene gene with protein product Approved 14q12 14q12 CG "Cathepsins|Endogenous ligands" "470|542" 1990-01-22 2015-09-11 1511 ENSG00000100448 OTTHUMG00000140182 uc001wpq.4 M16117 NM_001911 CCDS9631 P08311 2569462 MGI:88563 RGD:1307681 CTSG 116830 S01.133 objectId:2348 +HGNC:2533 CTSGL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:2535 CTSH cathepsin H protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "ACC-4|ACC-5|ACC4|ACC5" CPSB "Cathepsins|Minor histocompatibility antigens" "470|870" 2001-06-22 2015-02-16 1512 ENSG00000103811 OTTHUMG00000144171 uc021srk.2 X07549 NM_004390 CCDS10308 P09668 2849458 MGI:107285 RGD:2447 CTSH 116820 371315 C01.040 objectId:2349 3.4.22.16 +HGNC:2536 CTSK cathepsin K protein-coding gene gene with protein product Approved 1q21.3 01q21.3 PKND "CTSO2|CTSO|PYCD" cathepsin K (pycnodysostosis) Cathepsins 470 1995-05-11 2006-12-05 2016-10-05 1513 ENSG00000143387 OTTHUMG00000035008 uc001evp.3 BC016058 NM_000396 CCDS969 P43235 7818555 MGI:107823 RGD:61810 CTSK 601105 120897 objectId:2350 +HGNC:2537 CTSL cathepsin L protein-coding gene gene with protein product Approved 9q21.33 09q21.33 FLJ31037 CTSL1 cathepsin L1 Cathepsins 470 1989-03-06 2013-06-27 2013-06-27 2015-09-03 1514 ENSG00000135047 OTTHUMG00000020149 X12451 NM_001912 CCDS6675 P07711 "8419312|2835398" RGD:2448 116880 objectId:2351 3.4.22.15 +HGNC:33132 CTSL3P cathepsin L family member 3, pseudogene pseudogene pseudogene Approved 9q21.33 09q21.33 HCTSL-s CTSL3 cathepsin L family member 3 2007-04-27 2013-01-07 2013-01-07 2015-02-02 392360 ENSG00000188029 OTTHUMG00000020152 AJ851862 NR_027917 Q5NE16 19663681 RGD:631420 PGOHUM00000304362 I29.001 +HGNC:2539 CTSLP1 cathepsin L pseudogene 1 pseudogene pseudogene Approved 10q23.2 10q23.2 "CTSLL|CTSLL1|CTSL1P1" "cathepsin L-like 1|cathepsin L1 pseudogene 1" 1993-12-06 2013-06-27 2013-06-27 2015-02-02 118945 ENSG00000236417 OTTHUMG00000018677 L07772 NG_009858 7713509 PGOHUM00000289941 C01.P02 +HGNC:2540 CTSLP2 cathepsin L pseudogene 2 pseudogene pseudogene Approved 10q11.22 10q11.22 "bA342C24.4|bA144G6.6" "CTSLL2|CTSL1P2|CTSLP5|CTSLL5|CTSL1P5|CTSLP7|CTSLL7|CTSL1P7" "cathepsin L-like 2|cathepsin L1 pseudogene 2|cathepsin L pseudogene 5|cathepsin L-like 5|cathepsin L1 pseudogene 5|cathepsin L pseudogene 7|cathepsin L-like 7|cathepsin L1 pseudogene 7" 1993-12-06 2013-06-27 2013-06-27 2015-02-02 1517 ENSG00000266217 OTTHUMG00000018112 L25628 NR_033407 7713509 PGOHUM00000289848 I29.001 +HGNC:2541 CTSLP3 cathepsin L pseudogene 3 pseudogene pseudogene Approved 10q11.22 10q11.22 "CTSLL3|CTSL1P3" "cathepsin L-like 3|cathepsin L1 pseudogene 3" 1993-12-06 2013-06-27 2013-06-27 2015-02-02 644021 L25629 NG_016830 7713509 PGOHUM00000290146 C01.P08 +HGNC:23645 CTSLP4 cathepsin L pseudogene 4 pseudogene pseudogene Approved 10q11.23 10q11.23 "bA564C4.3|OTTHUMG00000018237" "CTSLL4|CTSL1P4" "cathepsin L-like 4|cathepsin L1 pseudogene 4" 2004-05-27 2013-06-27 2013-06-27 2015-02-02 644496 ENSG00000230011 OTTHUMG00000018237 NG_021158 19663681 PGOHUM00000289864 +HGNC:23611 CTSLP6 cathepsin L pseudogene 6 pseudogene pseudogene Approved 10q22.3 10q22.3 bA479O17.1 "CTSLL6|CTSL1P6" "cathepsin L-like 6|cathepsin L1 pseudogene 6" 2004-05-27 2013-06-27 2013-06-27 2015-02-02 642413 ENSG00000204437 OTTHUMG00000018589 NG_021157 PGOHUM00000289921 +HGNC:39084 CTSLP8 cathepsin L pseudogene 8 pseudogene pseudogene Approved 9q22.1 09q22.1 CTSL1P8 cathepsin L1 pseudogene 8 2010-10-12 2013-06-27 2013-06-27 2015-02-02 1518 ENSG00000234575 OTTHUMG00000020154 NR_033405 PGOHUM00000304365 +HGNC:2542 CTSO cathepsin O protein-coding gene gene with protein product Approved 4q32.1 04q32.1 CTSO1 Cathepsins 470 1997-10-10 2014-11-19 1519 ENSG00000256043 OTTHUMG00000161942 uc003ipg.4 X77383 NM_001334 CCDS3794 P43234 9790772 MGI:2139628 RGD:1589156 CTSO 600550 C01.035 +HGNC:2545 CTSS cathepsin S protein-coding gene gene with protein product Approved 1q21.3 01q21.3 Cathepsins 470 1992-07-09 2016-10-05 1520 ENSG00000163131 OTTHUMG00000035010 uc001evn.3 M90696 NM_004079 "CCDS968|CCDS55634" P25774 1373132 MGI:107341 RGD:621513 CTSS 116845 objectId:2353 3.4.22.27 +HGNC:2538 CTSV cathepsin V protein-coding gene gene with protein product Approved 9q22.33 09q22.33 CTSU CTSL2 cathepsin L2 Cathepsins 470 1998-08-27 2013-06-27 2013-06-27 2015-09-11 1515 ENSG00000136943 OTTHUMG00000020314 Y14734 NM_001333 CCDS6723 O60911 "9563472|10029531" MGI:88564 603308 objectId:2352 +HGNC:2546 CTSW cathepsin W protein-coding gene gene with protein product Approved 11q13.1 11q13.1 cathepsin W (lymphopain) Cathepsins 470 1997-06-12 2006-12-05 2014-11-19 1521 ENSG00000172543 OTTHUMG00000166663 uc001ogc.2 AF055903 NM_001335 CCDS8117 P56202 "9108299|9675123" MGI:1338045 RGD:1309354 CTSW 602364 C01.037 +HGNC:2547 CTSZ cathepsin Z protein-coding gene gene with protein product Approved 20q13.32 20q13.32 CTSX "cathepsin X|carboxypeptidase LB|cathepsin IV|cathepsin B2|cathepsin Y|cathepsin Z1|cysteine-type carboxypeptidase|lysosomal carboxypeptidase B" Cathepsins 470 1998-08-27 2014-11-19 1522 ENSG00000101160 OTTHUMG00000032858 uc002yai.3 AF032906 NM_001336 CCDS13474 Q9UBR2 9642240 MGI:1891190 RGD:708479 CTSZ 603169 C01.013 objectId:2354 +HGNC:3338 CTTN cortactin protein-coding gene gene with protein product Approved 11q13.3 11q13.3 EMS1 ems1 sequence (mammary tumor and squamous cell carcinoma-associated (p80/85 src substrate) 1994-01-07 2004-06-09 2004-06-08 2016-10-05 2017 ENSG00000085733 OTTHUMG00000134307 uc001opw.5 AJ288897 NM_138565 "CCDS8197|CCDS41680|CCDS53676" Q14247 7685625 MGI:99695 RGD:619839 CTTN 164765 +HGNC:15679 CTTNBP2 cortactin binding protein 2 protein-coding gene gene with protein product Approved 7q31.31 07q31.31 "KIAA1758|Orf4" "CORTBP2|C7orf8" cortactin binding protein 2 Ankyrin repeat domain containing 403 2001-05-09 2004-06-09 2004-06-08 2016-10-05 83992 ENSG00000077063 OTTHUMG00000022880 uc003vjf.4 NM_033427 CCDS5774 Q8WZ74 11707066 MGI:1353467 RGD:628691 CTTNBP2 609772 +HGNC:25330 CTTNBP2NL CTTNBP2 N-terminal like protein-coding gene gene with protein product Approved 1p13.2 01p13.2 DKFZp547A023 2005-08-12 2014-11-19 55917 ENSG00000143079 OTTHUMG00000011154 uc001ebx.4 AB037854 NM_018704 CCDS845 Q9P2B4 10718198 MGI:1933137 RGD:1310822 CTTNBP2NL 615100 +HGNC:29590 CTU1 cytosolic thiouridylase subunit 1 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "MGC17332|NCS6" ATPBD3 "ATP binding domain 3|cytosolic thiouridylase subunit 1 homolog (S. pombe)" 2005-10-24 2009-08-19 2013-05-31 2014-11-19 90353 ENSG00000142544 OTTHUMG00000182910 uc010eop.4 NM_145232 CCDS12824 Q7Z7A3 19017811 MGI:2385277 RGD:1308740 CTU1 612694 +HGNC:28005 CTU2 cytosolic thiouridylase subunit 2 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 NCS2 C16orf84 "chromosome 16 open reading frame 84|cytosolic thiouridylase subunit 2 homolog (S. pombe)" 2007-11-28 2009-08-19 2016-03-21 2016-03-21 348180 ENSG00000174177 OTTHUMG00000173417 uc002fln.4 BC021056 NM_001012762 "CCDS32506|CCDS45545|CCDS82026" Q2VPK5 19017811 MGI:1914215 RGD:1562594 CTU2 617057 +HGNC:31108 CTXN1 cortexin 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ25968 2004-02-16 2015-08-24 404217 ENSG00000178531 OTTHUMG00000182480 uc002miy.5 AK098834 NM_206833 CCDS12191 P60606 MGI:88566 RGD:2449 CTXN1 600135 +HGNC:31109 CTXN2 cortexin 2 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 2004-02-16 2015-08-24 399697 ENSG00000233932 OTTHUMG00000172152 uc001zwm.2 BK004876 XM_017022178 CCDS45254 P0C2S0 MGI:2139444 RGD:2311261 CTXN2 +HGNC:31110 CTXN3 cortexin 3 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 2004-02-16 2015-08-24 613212 ENSG00000205279 OTTHUMG00000163285 uc003kul.5 AB219764 XM_932841 CCDS34221 Q4LDR2 MGI:3642816 RGD:2300148 CTXN3 +HGNC:2548 CUBN cubilin protein-coding gene gene with protein product Approved 10p13 10p13 "IFCR|gp280" intrinsic factor-cobalamin receptor MGA1 cubilin (intrinsic factor-cobalamin receptor) 1998-11-02 2015-12-04 2016-10-12 8029 ENSG00000107611 OTTHUMG00000017741 uc001ioo.4 AF034611 NM_001081 CCDS7113 O60494 "9572993|9478979" MGI:1931256 RGD:68355 LRG_540|http://www.lrg-sequence.org/LRG/LRG_540 CUBN 602997 120903 +HGNC:44983 CUBNP1 cubilin pseudogene 1 pseudogene pseudogene Approved 10q11.21 10q11.21 cubilin (intrinsic factor-cobalamin receptor) pseudogene 1 2013-01-03 2016-06-27 2016-06-27 728064 ENSG00000231009 OTTHUMG00000018016 NG_023216 PGOHUM00000238433 +HGNC:44984 CUBNP2 cubilin pseudogene 2 pseudogene pseudogene Approved 10q11.21 10q11.21 cubilin (intrinsic factor-cobalamin receptor) pseudogene 2 2013-01-03 2016-06-27 2016-06-27 100289280 ENSG00000234993 OTTHUMG00000018078 PGOHUM00000238447 +HGNC:44985 CUBNP3 cubilin pseudogene 3 pseudogene pseudogene Approved 10q11.21 10q11.21 cubilin (intrinsic factor-cobalamin receptor) pseudogene 3 2013-01-03 2016-06-27 2016-06-27 100421634 ENSG00000235690 OTTHUMG00000018073 NG_025491 PGOHUM00000238761 +HGNC:31350 CUEDC1 CUE domain containing 1 protein-coding gene gene with protein product Approved 17q22 17q22 2004-03-04 2016-10-05 404093 ENSG00000180891 OTTHUMG00000178775 uc002ive.2 AK000746 NM_017949 CCDS11599 Q9NWM3 MGI:2144281 RGD:1304861 CUEDC1 +HGNC:28352 CUEDC2 CUE domain containing 2 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 MGC2491 C10orf66 chromosome 10 open reading frame 66 2004-01-28 2004-03-05 2004-03-04 2015-08-24 79004 ENSG00000107874 OTTHUMG00000018958 uc001kvn.3 BC000262 NM_024040 CCDS41566 Q9H467 24685480 MGI:1914366 RGD:1308096 CUEDC2 614142 +HGNC:2551 CUL1 cullin 1 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "Cullins|SCF complex" "1032|1171" 1998-10-29 2014-11-19 8454 ENSG00000055130 OTTHUMG00000152776 uc010lpg.4 U58087 NM_003592 CCDS34772 Q13616 8681378 MGI:1349658 RGD:1308157 CUL1 603134 +HGNC:49567 CUL1P1 cullin 1 pseudogene 1 pseudogene pseudogene Approved 5q23.2 05q23.2 2014-01-15 2014-01-15 100288463 ENSG00000251032 OTTHUMG00000163286 NG_021863 PGOHUM00000235391 +HGNC:2552 CUL2 cullin 2 protein-coding gene gene with protein product Approved 10p11.21 10p11.21 Cullins 1032 1998-10-29 2016-10-05 8453 ENSG00000108094 OTTHUMG00000017950 uc001ixw.3 U83410 NM_003591 "CCDS7179|CCDS73086|CCDS55709" Q13617 8681378 MGI:1918995 RGD:1310644 CUL2 603135 +HGNC:2553 CUL3 cullin 3 protein-coding gene gene with protein product Approved 2q36.2 02q36.2 Cullins 1032 1998-10-29 2014-11-19 8452 ENSG00000036257 OTTHUMG00000133167 uc002vny.4 U58089 XM_011511994 "CCDS2462|CCDS58751" Q13618 "8681378|17192413" MGI:1347360 RGD:1308190 CUL3 603136 303805 +HGNC:2554 CUL4A cullin 4A protein-coding gene gene with protein product Approved 13q34 13q34 Cullins 1032 1998-10-29 2015-08-28 8451 ENSG00000139842 OTTHUMG00000017384 uc021rmv.3 U58090 NM_003589 "CCDS9533|CCDS41908|CCDS73604" Q13619 8681378 MGI:1914487 RGD:1563853 CUL4A 603137 +HGNC:44027 CUL4AP1 cullin 4A pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 2012-05-28 2012-05-28 100129008 ENSG00000248139 OTTHUMG00000161138 NG_022031 PGOHUM00000245668 +HGNC:2555 CUL4B cullin 4B protein-coding gene gene with protein product Approved Xq24 Xq24 Cullins 1032 1998-10-29 2016-10-05 8450 ENSG00000158290 OTTHUMG00000022302 uc004esw.4 U58091 NM_003588 "CCDS35379|CCDS43987|CCDS83487" Q13620 8681378 MGI:1919834 RGD:1564494 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CUL4B CUL4B 300304 120908 +HGNC:2556 CUL5 cullin 5 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 VACM-1 Cullins 1032 1998-12-23 2015-08-24 8065 ENSG00000166266 OTTHUMG00000166369 uc001pjv.4 X81882 XM_017018363 CCDS31668 Q93034 "8681378|9037604" MGI:1922967 RGD:621742 CUL5 601741 +HGNC:21024 CUL7 cullin 7 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 dJ20C7.5 KIAA0076 KIAA0076 Cullins 1032 2003-11-21 2004-03-22 2004-03-22 2015-09-11 9820 ENSG00000044090 OTTHUMG00000014718 uc003otq.4 BC033647 NM_014780 "CCDS4881|CCDS55003" Q14999 "12481031|12904573" MGI:1913765 RGD:1587048 CUL7 609577 120910 +HGNC:15982 CUL9 cullin 9 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "H7AP1|KIAA0708|PARC" "parkin-like cytoplasmic p53 binding protein|p53-associated parkin-like cytoplasmic protein" Cullins 1032 2009-01-07 2014-11-19 23113 ENSG00000112659 OTTHUMG00000014723 uc003ouk.4 AB014608 NM_015089 CCDS4890 Q8IWT3 "17332328|10521492|12526791" MGI:1925559 RGD:1562008 CUL9 607489 +HGNC:21101 CUTA cutA divalent cation tolerance homolog protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "C6orf82|ACHAP" "chromosome 6 open reading frame 82|acetylcholinesterase-associated protein|cutA divalent cation tolerance homolog (E. coli)" 2003-05-19 2006-02-15 2016-07-19 2016-07-19 51596 ENSG00000112514 OTTHUMG00000031254 uc003oen.2 AF106943 NM_015921 "CCDS4779|CCDS34432|CCDS34433" O60888 "22351782|25557959" MGI:1914925 RGD:1303306 CUTA 616953 +HGNC:24271 CUTC cutC copper transporter protein-coding gene gene with protein product Approved 10q24.2 10q24.2 CGI-32 cutC copper transporter homolog (E. coli) 2004-04-20 2013-07-31 2016-10-05 51076 ENSG00000119929 OTTHUMG00000018889 uc001kqd.5 AF132966 NM_015960 CCDS7483 Q9NTM9 16182249 MGI:1913638 RGD:1304966 CUTC 610101 +HGNC:2557 CUX1 cut like homeobox 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "CDP|CDP1|CUX|CUT|Clox|CDP/Cut|CDP/Cux|Cux/CDP|CASP|GOLIM6" golgi integral membrane protein 6 CUTL1 "cut (Drosophila)-like 1 (CCAAT displacement protein)|cut-like 1, CCAAT displacement protein (Drosophila)|cut-like homeobox 1" CUT class homeoboxes and pseudogenes 527 1992-12-13 2007-11-07 2016-03-08 2016-03-08 1523 ENSG00000257923 OTTHUMG00000157129 uc003uyx.4 M74099 NM_001913 "CCDS5720|CCDS5721|CCDS47672|CCDS56498|CCDS56499|CCDS56500|CCDS59071" "P39880|Q13948" "8468066|9799793|15004235" MGI:88568 RGD:620618 CUX1 116896 8526 +HGNC:19347 CUX2 cut like homeobox 2 protein-coding gene gene with protein product Approved 12q24.11-q24.12 12q24.11-q24.12 "KIAA0293|CDP2" CUTL2 "cut-like 2 (Drosophila)|cut-like homeobox 2" CUT class homeoboxes and pseudogenes 527 2002-10-08 2007-11-07 2016-03-08 2016-10-11 23316 ENSG00000111249 OTTHUMG00000169546 uc001tsa.4 AB006631 NM_015267 CCDS41837 O14529 MGI:107321 RGD:1305967 CUX2 610648 8527 +HGNC:33694 CUX2P1 cut like homeobox 2 pseudogene 1 pseudogene pseudogene Approved 10p14 10p14 cut-like homeobox 2 pseudogene 1 CUT class homeoboxes and pseudogenes 527 2007-11-07 2016-03-08 2016-03-08 100126596 ENSG00000272436 OTTHUMG00000185574 NG_028748 8889 PGOHUM00000289739 +HGNC:33695 CUX2P2 cut like homeobox 2 pseudogene 2 pseudogene pseudogene Approved 4q32.1 04q32.1 cut-like homeobox 2 pseudogene 2 CUT class homeoboxes and pseudogenes 527 2007-11-07 2016-03-08 2016-03-08 100126597 8888 +HGNC:17937 CUZD1 CUB and zona pellucida like domains 1 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "ERG-1|UO-44" CUB and zona pellucida-like domains 1 2003-11-18 2016-02-01 2016-02-01 50624 ENSG00000138161 OTTHUMG00000019195 uc001lgs.4 AF305835 NM_022034 CCDS7631 Q86UP6 10542259 MGI:1202881 RGD:619771 CUZD1 616644 +HGNC:26939 CWC15 CWC15 spliceosome associated protein homolog protein-coding gene gene with protein product Approved 11q21 11q21 "C11orf5|HSPC148|Cwf15|AD002" "CWC15 homolog (S. cerevisiae)|CWC15 spliceosome-associated protein homolog (S. cerevisiae)|CWC15 spliceosome-associated protein" 2007-08-02 2016-08-08 2016-08-08 51503 ENSG00000150316 OTTHUMG00000181616 uc031ybh.1 AF161497 NM_016403 CCDS73369 Q9P013 "10873569|11884590" MGI:1913320 RGD:1310669 +HGNC:29322 CWC22 CWC22 spliceosome associated protein homolog protein-coding gene gene with protein product Approved 2q31.3 02q31.3 "KIAA1604|EIF4GL|fSAPb|NCM" functional spliceosome-associated protein b "CWC22 spliceosome-associated protein homolog (S. cerevisiae)|CWC22 spliceosome-associated protein|CWC22 homolog, spliceosome-associated protein" 2008-11-27 2016-08-08 2016-08-08 57703 ENSG00000163510 OTTHUMG00000154244 uc010frh.2 NM_020943 CCDS46465 Q9HCG8 "9136012|23236153" MGI:2136773 RGD:1565385 CWC22 615186 +HGNC:25989 CWC25 CWC25 spliceosome associated protein homolog protein-coding gene gene with protein product Approved 17q12 17q12 FLJ20291 CCDC49 "coiled-coil domain containing 49|CWC25 spliceosome-associated protein homolog (S. cerevisiae)" 2005-12-19 2010-01-26 2016-06-29 2016-06-29 54883 ENSG00000273559 OTTHUMG00000188505 uc002hqu.5 AK000298 NM_017748 CCDS45663 Q9NXE8 19941820 MGI:1914730 RGD:1305258 CWC25 +HGNC:10664 CWC27 CWC27 spliceosome associated protein homolog protein-coding gene gene with protein product Approved 5q12.3 05q12.3 "NY-CO-10|SDCCAG-10" SDCCAG10 "serologically defined colon cancer antigen 10|CWC27 spliceosome-associated protein homolog (S. cerevisiae)|CWC27 spliceosome-associated protein homolog" Cyclophilin peptidylprolyl isomerases 909 1999-07-23 2010-01-26 2016-01-21 2016-01-21 10283 ENSG00000153015 OTTHUMG00000074069 uc003jtn.2 AF039692 NM_005869 "CCDS3982|CCDS75252" Q6UX04 "9610721|19941820" MGI:1914535 RGD:1310697 CWC27 +HGNC:25613 CWF19L1 CWF19-like 1, cell cycle control (S. pombe) protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "FLJ10998|hDrn1" 2004-03-08 2016-05-05 55280 ENSG00000095485 OTTHUMG00000018901 uc001kqq.1 AK001860 NM_018294 CCDS7489 Q69YN2 14702039 MGI:1919752 RGD:1304716 CWF19L1 616120 457556 +HGNC:26508 CWF19L2 CWF19-like 2, cell cycle control (S. pombe) protein-coding gene gene with protein product Approved 11q22.3 11q22.3 FLJ32343 2004-03-08 2016-10-05 143884 ENSG00000152404 OTTHUMG00000152975 uc010rvp.3 AK056905 NM_152434 CCDS8336 Q2TBE0 14702039 MGI:1918023 RGD:1310083 CWF19L2 +HGNC:26133 CWH43 cell wall biogenesis 43 C-terminal homolog protein-coding gene gene with protein product Approved 4p11 04p11 "FLJ21511|CWH43-C" cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) 2009-07-28 2015-07-02 2015-08-24 80157 ENSG00000109182 OTTHUMG00000128627 uc003gyv.4 NM_025087 "CCDS3486|CCDS68697" Q9H720 "17714445|17761529" MGI:2444131 RGD:1310958 CWH43 +HGNC:10647 CX3CL1 C-X3-C motif chemokine ligand 1 protein-coding gene gene with protein product Approved 16q21 16q21 "NTN|C3Xkine|ABCD-3|CXC3C|CXC3|fractalkine|neurotactin" SCYD1 "small inducible cytokine subfamily D (Cys-X3-Cys), member 1 (fractalkine, neurotactin)|chemokine (C-X3-C motif) ligand 1" "Chemokine ligands|Endogenous ligands" "483|542" 1997-08-22 2002-08-23 2016-03-01 2016-10-05 6376 ENSG00000006210 OTTHUMG00000133469 uc002eli.4 U84487 NM_002996 CCDS10779 P78423 "9177350|9024663" MGI:1097153 RGD:620458 CX3CL1 601880 +HGNC:2558 CX3CR1 C-X3-C motif chemokine receptor 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "CMKDR1|V28|CCRL1" "GPR13|CMKBRL1" "chemokine (C-X3-C) receptor 1|chemokine (C-X3-C motif) receptor 1" C-X-3-C motif chemokine receptors 1093 1998-01-12 2016-03-14 2016-10-05 1524 ENSG00000168329 OTTHUMG00000156249 uc021wwb.2 BC028078 NM_001337 "CCDS43069|CCDS54571" P49238 "9726990|7646814" MGI:1333815 RGD:620137 CX3CR1 601470 260326 objectId:74 +HGNC:2559 CXADR coxsackie virus and adenovirus receptor protein-coding gene gene with protein product Approved 21q21.1 21q21.1 CAR "V-set domain containing|Immunoglobulin like domain containing" "590|594" 1998-03-24 2015-08-28 1525 ENSG00000154639 OTTHUMG00000074508 uc002yki.4 Y07593 XR_001754814 "CCDS33519|CCDS56204|CCDS56205|CCDS56206|CCDS56207" P78310 "9036860|9096397" MGI:1201679 RGD:619794 CXADR 602621 +HGNC:23770 CXADRP1 coxsackie virus and adenovirus receptor pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 "CAR|CXADRP" 2008-01-31 2014-11-19 653108 ENSG00000214319 OTTHUMG00000074204 NG_008739 PGOHUM00000258119 +HGNC:33973 CXADRP2 coxsackie virus and adenovirus receptor pseudogene 2 pseudogene pseudogene Approved 15q11.2 15q11.2 2008-01-31 2014-11-19 646243 ENSG00000258712 OTTHUMG00000171728 NR_024387 PGOHUM00000246637 +HGNC:33974 CXADRP3 coxsackie virus and adenovirus receptor pseudogene 3 pseudogene pseudogene Approved 18p11.21 18p11.21 2008-01-31 2013-09-19 440224 ENSG00000265766 OTTHUMG00000178700 uc010xai.3 NR_024076 PGOHUM00000234879 +HGNC:2560 CXB3S coxsackie virus B3 sensitivity phenotype phenotype only Approved 19pter-q13 19pter-q13 2001-06-22 2012-10-02 1526 120050 +HGNC:4602 CXCL1 C-X-C motif chemokine ligand 1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "SCYB1|GROa|MGSA-a|NAP-3" melanoma growth stimulating activity, alpha "MGSA|GRO1|FSP" "GRO1 oncogene (melanoma growth stimulating activity, alpha)|fibroblast secretory protein|chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha)" "Chemokine ligands|Endogenous ligands" "483|542" 1988-08-11 2002-08-23 2016-03-01 2016-03-01 2919 ENSG00000163739 OTTHUMG00000160866 uc003hhh.4 J03561 NM_001511 CCDS47074 P09341 2217207 "RGD:619869|RGD:621812" CXCL1 155730 +HGNC:10641 CXCL1P1 C-X-C motif chemokine ligand 1 pseudogene 1 pseudogene pseudogene Approved 4q13.3 04q13.3 "MGSAP|GROP|GRO1P" "SCYB1P|CXCL1P" "small inducible cytokine B subfamily (Cys-X-Cys motif), member 1 (MGSA/GRO), pseudogene|chemokine (C-X-C motif) ligand 1 pseudogene" 2000-03-29 2016-03-01 2016-03-01 2016-03-01 50612 ENSG00000250339 OTTHUMG00000160868 U88432 NG_001275 9524820 PGOHUM00000245590 +HGNC:4603 CXCL2 C-X-C motif chemokine ligand 2 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "SCYB2|GROb|MIP-2a|MGSA-b|CINC-2a" GRO2 "GRO2 oncogene|chemokine (C-X-C motif) ligand 2" "Chemokine ligands|Endogenous ligands" "483|542" 1991-05-21 2002-08-23 2016-03-01 2016-03-01 2920 ENSG00000081041 OTTHUMG00000160865 uc003hhm.5 M36820 NM_002089 CCDS34008 P19875 2217207 MGI:108068 RGD:70069 CXCL2 139110 +HGNC:4604 CXCL3 C-X-C motif chemokine ligand 3 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "SCYB3|GROg|MIP-2b|CINC-2b" GRO3 "GRO3 oncogene|chemokine (C-X-C motif) ligand 3" "Chemokine ligands|Endogenous ligands" "483|542" 1991-05-21 2002-08-23 2016-03-01 2016-10-05 2921 ENSG00000163734 OTTHUMG00000160861 uc003hhl.5 M36821 NM_002090 CCDS34007 P19876 2217207 MGI:1340094 CXCL3 139111 +HGNC:10642 CXCL5 C-X-C motif chemokine ligand 5 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 ENA-78 SCYB5 "small inducible cytokine subfamily B (Cys-X-Cys), member 5 (epithelial-derived neutrophil-activating peptide 78)|chemokine (C-X-C motif) ligand 5" "Chemokine ligands|Endogenous ligands" "483|542" 1996-09-03 2002-08-23 2016-03-01 2016-03-01 6374 ENSG00000163735 OTTHUMG00000160871 uc003hhk.5 X78686 NM_002994 CCDS34006 P42830 7929219 CXCL5 600324 +HGNC:10643 CXCL6 C-X-C motif chemokine ligand 6 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "GCP-2|CKA-3" granulocyte chemotactic protein 2 SCYB6 "small inducible cytokine subfamily B (Cys-X-Cys), member 6 (granulocyte chemotactic protein 2)|chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)|chemokine (C-X-C motif) ligand 6" "Chemokine ligands|Endogenous ligands" "483|542" 1997-10-09 2002-08-23 2016-03-01 2016-03-01 6372 ENSG00000124875 OTTHUMG00000130010 uc003hhf.4 U83303 NM_002993 CCDS3560 P80162 9465307 MGI:1096868 RGD:708540 CXCL6 138965 +HGNC:6025 CXCL8 C-X-C motif chemokine ligand 8 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "SCYB8|LUCT|LECT|MDNCF|TSG-1|IL-8|NAP-1|3-10C|MONAP|AMCF-I|LYNAP|NAF|b-ENAP|GCP-1|K60|GCP1|NAP1" "neutrophil-activating peptide 1|granulocyte chemotactic protein 1|monocyte-derived neutrophil chemotactic factor|lung giant cell carcinoma-derived chemotactic protein|tumor necrosis factor-induced gene 1|monocyte-derived neutrophil-activating peptide|lymphocyte derived neutrophil activating peptide|beta endothelial cell-derived neutrophil activating peptide|alveolar macrophage chemotactic factor I" IL8 "interleukin 8|chemokine (C-X-C motif) ligand 8" "Chemokine ligands|Endogenous ligands|Interleukins" "483|542|601" 1989-06-30 2014-04-10 2016-03-01 2016-10-05 3576 ENSG00000169429 OTTHUMG00000151316 Y00787 NM_000584 CCDS34005 P10145 "1427896|11178128" 146930 +HGNC:7098 CXCL9 C-X-C motif chemokine ligand 9 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "SCYB9|Humig|crg-10" "CMK|MIG" "monokine induced by gamma interferon|chemokine (C-X-C motif) ligand 9" "Chemokine ligands|Endogenous ligands" "483|542" 1996-05-28 2002-08-23 2016-03-01 2016-10-05 4283 ENSG00000138755 OTTHUMG00000160889 uc003hjh.2 X72755 NM_002416 CCDS34014 Q07325 "8476424|9730616" MGI:1352449 RGD:628798 CXCL9 601704 +HGNC:10637 CXCL10 C-X-C motif chemokine ligand 10 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "IFI10|IP-10|crg-2|mob-1|C7|gIP-10" "INP10|SCYB10" "small inducible cytokine subfamily B (Cys-X-Cys), member 10|chemokine (C-X-C motif) ligand 10" "Chemokine ligands|Endogenous ligands" "483|542" 1999-12-09 2002-08-23 2016-03-01 2016-10-05 3627 ENSG00000169245 OTTHUMG00000160887 uc003hjl.5 X02530 NM_001565 CCDS43240 P02778 "2437586|3925348" MGI:1352450 RGD:620209 CXCL10 147310 +HGNC:10638 CXCL11 C-X-C motif chemokine ligand 11 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "H174|b-R1|I-TAC|IP-9" "SCYB9B|SCYB11" "small inducible cytokine subfamily B (Cys-X-Cys), member 11|chemokine (C-X-C motif) ligand 11" "Chemokine ligands|Endogenous ligands" "483|542" 1998-06-23 2002-08-23 2016-03-01 2016-10-05 6373 ENSG00000169248 OTTHUMG00000130101 uc062xkv.1 U66096 NM_005409 CCDS3574 O14625 9730616 MGI:1860203 RGD:727827 CXCL11 604852 +HGNC:10672 CXCL12 C-X-C motif chemokine ligand 12 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "SCYB12|SDF-1a|SDF-1b|PBSF|TLSF-a|TLSF-b|TPAR1" "SDF1A|SDF1B|SDF1" "stromal cell-derived factor 1|chemokine (C-X-C motif) ligand 12" "Chemokine ligands|Endogenous ligands" "483|542" 1994-11-30 2002-08-23 2016-03-01 2016-10-05 6387 ENSG00000107562 OTTHUMG00000018054 uc001jbi.4 L36033 NM_000609 "CCDS7207|CCDS31186|CCDS44373|CCDS53527|CCDS60518" P48061 7490086 MGI:103556 RGD:3651 CXCL12 600835 +HGNC:10639 CXCL13 C-X-C motif chemokine ligand 13 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "BLC|BCA-1|BLR1L|ANGIE|ANGIE2" B-cell chemoattractant SCYB13 "small inducible cytokine B subfamily (Cys-X-Cys motif), member 13 (B-cell chemoattractant)|chemokine (C-X-C motif) ligand 13" "Chemokine ligands|Endogenous ligands" "483|542" 2000-09-05 2002-08-23 2016-03-01 2016-10-05 10563 ENSG00000156234 OTTHUMG00000130201 uc003hkr.5 AJ002211 XM_006714063 CCDS3582 O43927 "9463416|9486651" MGI:1888499 RGD:1564256 CXCL13 605149 +HGNC:10640 CXCL14 C-X-C motif chemokine ligand 14 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "BRAK|NJAC|bolekine|Kec|MIP-2g|BMAC|KS1" breast and kidney SCYB14 "small inducible cytokine subfamily B (Cys-X-Cys), member 14 (BRAK)|chemokine (C-X-C motif) ligand 14" Chemokine ligands 483 1999-07-30 2002-08-23 2016-03-01 2016-10-05 9547 ENSG00000145824 OTTHUMG00000129139 uc003lay.4 AF073957 NM_004887 CCDS4188 O95715 10049774 MGI:1888514 RGD:1307406 CXCL14 604186 +HGNC:16642 CXCL16 C-X-C motif chemokine ligand 16 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "SR-PSOX|CXCLG16|SRPSOX" CXC chemokine ligand 16 chemokine (C-X-C motif) ligand 16 "Chemokine ligands|Endogenous ligands|Scavenger receptors" "483|542|1253" 2001-09-21 2016-03-01 2016-10-05 58191 ENSG00000161921 OTTHUMG00000090761 uc002fyr.6 AF275260 NM_022059 CCDS11052 Q9H2A7 "11017100|11060282" MGI:1932682 RGD:1562928 CXCL16 605398 +HGNC:19232 CXCL17 C-X-C motif chemokine ligand 17 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "Dcip1|UNQ473|DMC|VCC1" chemokine (C-X-C motif) ligand 17 Chemokine ligands 483 2007-10-15 2016-03-01 2016-03-01 284340 ENSG00000189377 OTTHUMG00000182817 uc002otu.4 NM_198477 CCDS12608 Q6UXB2 17201934 MGI:2387642 RGD:1304717 CXCL17 611387 +HGNC:6026 CXCR1 C-X-C motif chemokine receptor 1 protein-coding gene gene with protein product Approved 2q35 02q35 "CKR-1|CDw128a|CD181" "CMKAR1|IL8RA" "interleukin 8 receptor, alpha|chemokine (C-X-C motif) receptor 1" "CD molecules|Interleukin receptors|C-X-C motif chemokine receptors" "471|602|1094" 1992-11-09 2009-11-25 2016-03-14 2016-03-14 3577 ENSG00000163464 OTTHUMG00000133108 uc002vhc.4 U11870 NM_000634 CCDS2409 P25024 "1303245|1427896" MGI:2448715 RGD:2905 CXCR1 146929 objectId:68 CD181 +HGNC:6027 CXCR2 C-X-C motif chemokine receptor 2 protein-coding gene gene with protein product Approved 2q35 02q35 "CMKAR2|CD182" IL8RB "interleukin 8 receptor, beta|chemokine (C-X-C motif) receptor 2" "CD molecules|Interleukin receptors|C-X-C motif chemokine receptors" "471|602|1094" 1991-08-19 2009-11-25 2016-03-14 2016-03-14 3579 ENSG00000180871 OTTHUMG00000133107 uc002vha.3 U11869 NM_001557 CCDS2408 P25025 1427896 MGI:105303 RGD:2906 CXCR2 146928 431609 objectId:69 CD182 +HGNC:6028 CXCR2P1 C-X-C motif chemokine receptor 2 pseudogene 1 pseudogene pseudogene Approved 2q35 02q35 "IL8RBP|CXCR2P" "interleukin 8 receptor, beta pseudogene|chemokine (C-X-C motif) receptor 2 pseudogene|chemokine (C-X-C motif) receptor 2 pseudogene 1" 1992-11-27 2010-04-14 2016-03-14 2016-03-14 3580 ENSG00000229754 OTTHUMG00000155244 M98335 NR_002712 "1427896|1303245" PGOHUM00000240523 +HGNC:4540 CXCR3 C-X-C motif chemokine receptor 3 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "CKR-L2|CMKAR3|IP10-R|MigR|CD183" GPR9 "G protein-coupled receptor 9|chemokine (C-X-C motif) receptor 3" "CD molecules|C-X-C motif chemokine receptors" "471|1094" 1994-11-01 2002-08-23 2016-03-14 2016-10-05 2833 ENSG00000186810 OTTHUMG00000033326 uc004eaf.3 U32674 XM_017029435 "CCDS14416|CCDS48135" P49682 "8666380|9064356" MGI:1277207 RGD:621528 CXCR3 300574 objectId:70 CD183 +HGNC:2561 CXCR4 C-X-C motif chemokine receptor 4 protein-coding gene gene with protein product Approved 2q22.1 02q22.1 "LESTR|NPY3R|HM89|NPYY3R|D2S201E|fusin|HSY3RR|NPYR|CD184" "chemokine (C-X-C motif), receptor 4 (fusin)|chemokine (C-X-C motif) receptor 4" "CD molecules|C-X-C motif chemokine receptors" "471|1094" 1998-09-17 2016-03-14 2016-10-12 7852 ENSG00000121966 OTTHUMG00000153583 uc002tuy.3 AF005058 NM_001008540 "CCDS33295|CCDS46420" P61073 "9599023|9379028" MGI:109563 RGD:620465 "CXCR4base: Mutation registry for WHIM syndrome (warts, hypogammaglobulinemia, immunodeficiency, and myelokathexis)|http://structure.bmc.lu.se/idbase/CXCR4base/|LRG_51|http://www.lrg-sequence.org/LRG/LRG_51" CXCR4 162643 120914 objectId:71 CD184 +HGNC:1060 CXCR5 C-X-C motif chemokine receptor 5 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "MDR15|CD185" BLR1 "Burkitt lymphoma receptor 1, GTP-binding protein|Burkitt lymphoma receptor 1, GTP binding protein (chemokine (C-X-C motif) receptor 5)|chemokine (C-X-C motif) receptor 5" "CD molecules|C-X-C motif chemokine receptors" "471|1094" 1993-06-29 2008-01-22 2016-03-14 2016-03-14 643 ENSG00000160683 OTTHUMG00000166345 uc001pue.5 X68829 NM_001716 CCDS8402 P32302 1425907 MGI:103567 RGD:62010 CXCR5 601613 objectId:72 CD185 +HGNC:16647 CXCR6 C-X-C motif chemokine receptor 6 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "TYMSTR|STRL33|BONZO|CD186" chemokine (C-X-C motif) receptor 6 "CD molecules|C-X-C motif chemokine receptors" "471|1094" 2002-08-23 2016-03-14 2016-10-05 10663 ENSG00000172215 OTTHUMG00000133448 uc062izf.1 AF007545 XM_011533290 CCDS2735 O00574 "9166430|9230441" MGI:1934582 RGD:1642118 CXCR6 605163 objectId:73 CD186 +HGNC:25667 CXorf21 chromosome X open reading frame 21 protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 FLJ11577 2004-06-02 2016-10-05 80231 ENSG00000120280 OTTHUMG00000021325 uc004dcg.3 BC020611 NM_025159 CCDS14224 Q9HAI6 12477932 MGI:1918648 RGD:1565785 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf21 CXorf21 +HGNC:27413 CXorf23 chromosome X open reading frame 23 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 2004-06-04 2016-10-05 256643 ENSG00000173681 OTTHUMG00000021226 uc004czp.4 AL833278 NM_198279 CCDS14194 A2AJT9 14702039 MGI:2685992 RGD:1562161 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf23 CXorf23 +HGNC:25866 CXorf36 chromosome X open reading frame 36 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "FLJ14103|DIA1R" 2004-08-27 2016-10-05 79742 ENSG00000147113 OTTHUMG00000021403 uc004dgg.3 AF289581 NM_024689 "CCDS14266|CCDS48096" Q9H7Y0 "11944989|21283809" MGI:1923155 RGD:1559731 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf36 CXorf36 300959 +HGNC:28589 CXorf38 chromosome X open reading frame 38 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 MGC39350 2004-09-02 2016-10-05 159013 ENSG00000185753 OTTHUMG00000024104 uc004dew.4 AL832829 NM_144970 "CCDS14253|CCDS83467" Q8TB03 MGI:1916405 RGD:1565685 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf38 CXorf38 +HGNC:28089 CXorf40A chromosome X open reading frame 40A protein-coding gene gene with protein product Approved Xq28 Xq28 EOLA1 endothelial-overexpressed lipopolysaccharide-associated factor 1 CXorf40 chromosome X open reading frame 40 2004-09-06 2005-09-13 2005-09-13 2014-11-18 91966 ENSG00000197620 OTTHUMG00000022622 uc065bnd.1 AF011889 NM_178124 "CCDS14687|CCDS55522" Q8TE69 "8717057|9147653|16383041" MGI:1915868 CXorf40A 300954 +HGNC:17402 CXorf40B chromosome X open reading frame 40B protein-coding gene gene with protein product Approved Xq28 Xq28 2005-09-13 2015-09-08 541578 ENSG00000197021 OTTHUMG00000034327 uc004fdy.4 BC009523 NM_001013845 CCDS35426 Q96DE9 MGI:1915868 RGD:1562747 CXorf40B +HGNC:30891 CXorf49 chromosome X open reading frame 49 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 2008-01-24 2016-09-30 100130361 ENSG00000215115 OTTHUMG00000022702 uc011mpy.3 BE731937 NM_001145140 CCDS75991 A8MYA2 MGI:2685988 +HGNC:34229 CXorf49B chromosome X open reading frame 49B protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 2008-05-27 2016-09-27 100132994 ENSG00000215113 OTTHUMG00000021804 uc011mpz.3 BE731937 NM_001145139 CCDS75992 A8MYA2 MGI:2685988 RGD:2320498 +HGNC:30533 CXorf51A chromosome X open reading frame 51A other unknown Approved Xq27.3 Xq27.3 CXorf51 chromosome X open reading frame 51 2008-01-24 2011-09-08 2011-09-08 2014-11-19 100129239 ENSG00000224440 OTTHUMG00000022600 uc065blc.1 AA723770 NM_001144064 CCDS83498 +HGNC:42787 CXorf51B chromosome X open reading frame 51B other unknown Approved Xq27.3 Xq27.3 2011-09-08 2013-01-16 100133053 ENSG00000235699 OTTHUMG00000022599 uc065blb.1 NM_001244892 CCDS83497 +HGNC:26239 CXorf56 chromosome X open reading frame 56 protein-coding gene gene with protein product Approved Xq24 Xq24 FLJ22965 2006-02-06 2016-09-30 63932 ENSG00000018610 OTTHUMG00000022276 uc011mtu.3 AK026618 NM_022101 "CCDS55484|CCDS55485" Q9H5V9 12477932 MGI:1924894 RGD:1564541 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf56 CXorf56 +HGNC:25486 CXorf57 chromosome X open reading frame 57 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "FLJ14191|FLJ10178" 2006-07-10 2016-09-30 55086 ENSG00000147231 OTTHUMG00000022150 uc004emi.5 AK024253 NM_018015 "CCDS14519|CCDS55470" Q6NSI4 MGI:2147848 RGD:1589413 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf57 CXorf57 +HGNC:26356 CXorf58 chromosome X open reading frame 58 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 FLJ25444 2006-07-11 2016-09-30 254158 ENSG00000165182 OTTHUMG00000021258 uc004daz.2 AK058173 NM_152761 CCDS14209 Q96LI9 MGI:1921682 RGD:1590267 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf58 CXorf58 +HGNC:33713 CXorf65 chromosome X open reading frame 65 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 2009-03-06 2016-09-30 158830 ENSG00000204165 OTTHUMG00000021785 uc011mpo.3 BC144434 NM_001025265 CCDS35324 A6NEN9 MGI:2685460 RGD:9078783 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf65 CXorf65 +HGNC:33743 CXorf66 chromosome X open reading frame 66 protein-coding gene gene with protein product Approved Xq27.1 Xq27.1 "RP11-35F15.2|SGPX" secreted glycoprotein, X-linked 2009-03-20 2016-09-30 347487 ENSG00000203933 OTTHUMG00000022539 uc004fbb.4 NM_001013403 CCDS35411 Q5JRM2 24709545 MGI:3779666 RGD:1584124 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf66 CXorf66 +HGNC:33738 CXorf67 chromosome X open reading frame 67 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 2009-04-14 2016-09-30 340602 ENSG00000187690 OTTHUMG00000187481 uc064zgx.1 BC046248 NM_203407 CCDS78485 Q86X51 23959973 MGI:2147968 RGD:7681336 CXorf67 +HGNC:24343 CXXC1 CXXC finger protein 1 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "HsT2645|PCCX1|hCGBP|PHF18|CGBP|SPP1|CFP1|ZCGPC1" "CpG binding protein|DNA-binding protein with PHD finger and CXXC domain|zinc finger, CpG binding-type containing 1" CXXC finger 1 (PHD domain) "PHD finger proteins|Zinc fingers CXXC-type" "88|136" 2004-02-18 2014-02-20 2016-10-05 30827 ENSG00000154832 OTTHUMG00000132670 uc002leq.5 BC014940 NM_014593 "CCDS11945|CCDS45866" Q9P0U4 "10799292|10688657" MGI:1921572 RGD:1310755 CXXC1 609150 +HGNC:27864 CXXC1P1 CXXC finger protein 1 pseudogene 1 pseudogene pseudogene Approved Xp11.23 Xp11.23 FLJ36789 "CXorf25|NCRNA00236" "chromosome X open reading frame 25|non-protein coding RNA 236|CXXC finger 1 pseudogene 1" 2004-06-17 2010-07-02 2011-12-01 2016-10-05 392459 ENSG00000187893 OTTHUMG00000021450 AK094108 NR_033924 14702039 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf25 CXXC1P1 PGOHUM00000241737 +HGNC:24593 CXXC4 CXXC finger protein 4 protein-coding gene gene with protein product Approved 4q24 04q24 IDAX Dvl-binding protein IDAX (inhibition of the Dvl and Axin complex) Zinc fingers CXXC-type 136 2004-02-18 2011-12-01 2016-04-25 80319 ENSG00000168772 OTTHUMG00000131121 uc003hxf.3 NM_025212 CCDS3665 Q9H2H0 11113207 MGI:2442112 RGD:69228 CXXC4 611645 +HGNC:26943 CXXC5 CXXC finger protein 5 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "HSPC195|RINF|WID" "retinoid-inducible nuclear factor|WT1-induced Inhibitor of Dishevelled" Zinc fingers CXXC-type 136 2004-02-18 2011-12-01 2016-10-05 51523 ENSG00000171604 OTTHUMG00000163331 uc010jfg.2 AK024338 NM_016463 CCDS43370 Q7LFL8 "11042152|19001364|19182210|20220130" MGI:1914643 RGD:1359466 CXXC5 612752 +HGNC:2570 CYB5A cytochrome b5 type A protein-coding gene gene with protein product Approved 18q22.3 18q22.3 CYB5 "cytochrome b-5|cytochrome b5 (microsomal)|cytochrome b5 type A (microsomal)" 1990-06-22 2006-01-30 2016-04-05 2016-10-05 1528 ENSG00000166347 OTTHUMG00000132843 uc002lli.4 M22865 "NM_001914|NM_148923" "CCDS12004|CCDS12005|CCDS54188" P00167 1840560 MGI:1926952 RGD:620558 CYB5A 613218 120929 +HGNC:2572 CYB5AP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-06-27 +HGNC:2573 CYB5AP2 cytochrome b5 type A pseudogene 2 pseudogene pseudogene Approved 2q31.1 02q31.1 CYB5P2 "cytochrome b-5 pseudogene 2|cytochrome b5 type A (microsomal) pseudogene 2" 1992-10-06 2010-01-13 2016-06-27 2016-06-27 100128621 XR_078268 1712589 +HGNC:2574 CYB5AP3 cytochrome b5 type A pseudogene 3 pseudogene pseudogene Approved 14q32.12 14q32.12 Psgb-5-1 CYB5P3 "cytochrome b-5 pseudogene 3|cytochrome b5 type A (microsomal) pseudogene 3" 1994-07-29 2010-01-13 2016-06-27 2016-06-27 1531 M25765 NG_002437 "8262522|2775258" +HGNC:2575 CYB5AP4 cytochrome b5 type A pseudogene 4 pseudogene pseudogene Approved 20p11.21 20p11.21 "bA189G24.1|Psgb-5-2" CYB5P4 "cytochrome b-5 pseudogene 4|cytochrome b5 type A (microsomal) pseudogene 4" 1994-07-29 2010-01-13 2016-06-27 2016-07-22 1532 ENSG00000213882 OTTHUMG00000032048 M24781 NG_001021 "8262522|2775258" PGOHUM00000296921 +HGNC:2576 CYB5AP5 cytochrome b5 type A pseudogene 5 pseudogene pseudogene Approved 14q12 14q12 CYB5P5 "cytochrome b-5 pseudogene 5|cytochrome b5 type A (microsomal) pseudogene 5" 1994-07-29 2010-01-13 2016-06-27 2016-06-27 100289051 ENSG00000257503 OTTHUMG00000170316 NG_029049 PGOHUM00000292606 +HGNC:24374 CYB5B cytochrome b5 type B protein-coding gene gene with protein product Approved 16q22.1 16q22.1 CYB5-M cytochrome b5 type B (outer mitochondrial membrane) 2006-01-30 2016-03-17 2016-03-17 80777 ENSG00000103018 OTTHUMG00000133020 uc059wli.1 NM_030579 CCDS10880 O43169 "11867265|14733950" MGI:1913677 RGD:621551 CYB5B 611964 +HGNC:26516 CYB5D1 cytochrome b5 domain containing 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 FLJ32499 2006-01-12 2006-01-12 2015-08-28 124637 ENSG00000182224 OTTHUMG00000178175 uc002gjb.5 AK057061 NM_144607 "CCDS11123|CCDS82061" Q6P9G0 12477932 MGI:2685586 RGD:1559567 CYB5D1 +HGNC:28471 CYB5D2 cytochrome b5 domain containing 2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 MGC32124 neuferricin Membrane associated progesterone receptor family 1282 2006-01-12 2016-06-10 124936 ENSG00000167740 OTTHUMG00000177726 uc002fxm.5 AK172844 NM_144611 "CCDS11044|CCDS58501" Q8WUJ1 19968755 MGI:2684848 RGD:1359124 CYB5D2 +HGNC:13397 CYB5R1 cytochrome b5 reductase 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 humb5R2 NQO3A2 NAD(P)H:quinone oxidoreductase type 3, polypeptide A2 2004-06-08 2005-07-13 2014-11-19 51706 ENSG00000159348 OTTHUMG00000041387 uc001gyt.3 AF169481 NM_016243 CCDS1431 Q9UHQ9 "12975309|10611283" MGI:1919267 RGD:1306084 CYB5R1 608341 1.6.2.2 +HGNC:24376 CYB5R2 cytochrome b5 reductase 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 2005-07-13 2014-11-18 51700 ENSG00000166394 OTTHUMG00000165665 uc009yfk.4 AF169802 NM_016229 CCDS7780 Q6BCY4 10611283 MGI:2444415 RGD:1308421 CYB5R2 608342 1.6.2.2 +HGNC:2873 CYB5R3 cytochrome b5 reductase 3 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 NADH-cytochrome b5 reductase 3 DIA1 diaphorase (NADH) (cytochrome b-5 reductase) 2001-06-22 2005-07-13 2016-01-18 1727 ENSG00000100243 OTTHUMG00000150745 uc003bcz.4 M16461 NM_001129819 "CCDS14040|CCDS33658|CCDS54535" P00387 "2479590|3268037" MGI:94893 RGD:2502 CYB5R3 613213 120932 1.6.2.2 +HGNC:20147 CYB5R4 cytochrome b5 reductase 4 protein-coding gene gene with protein product Approved 6q14.2 06q14.2 "b5+b5R|dJ676J13.1" NCB5OR NADPH cytochrome B5 oxidoreductase 2003-08-27 2005-07-13 2014-11-18 51167 ENSG00000065615 OTTHUMG00000015118 uc003pkf.4 AF169803 NM_016230 CCDS5000 Q7L1T6 10611283 MGI:2386848 RGD:621834 CYB5R4 608343 1.6.2.2 +HGNC:32220 CYB5RL cytochrome b5 reductase like protein-coding gene gene with protein product Approved 1p32.3 01p32.3 LOC606495 cytochrome b5 reductase-like 2008-12-03 2016-01-19 2016-01-19 606495 ENSG00000215883 OTTHUMG00000008082 uc057gtt.1 NM_001031672 CCDS44151 Q6IPT4 12477932 MGI:1919657 RGD:1597451 CYB5RL +HGNC:2571 CYB561 cytochrome b561 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "FRRS2|CYB561A1" "ferric-chelate reductase 2|cytochrome b561 family, member A1" Cytochrome b561 497 1993-10-14 2013-03-14 2014-11-19 1534 ENSG00000008283 OTTHUMG00000179116 uc002jat.4 NM_001915 "CCDS11636|CCDS82184" P49447 "7959749|23249217" MGI:103253 RGD:1310987 CYB561 600019 +HGNC:23014 CYB561A3 cytochrome b561 family member A3 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 CYBASC3 "cytochrome b, ascorbate dependent 3|cytochrome b561 family, member A3" Cytochrome b561 497 2003-10-06 2013-03-14 2015-11-18 2015-11-18 220002 ENSG00000162144 OTTHUMG00000157187 uc001nrg.4 AK024953 NM_153611 "CCDS8004|CCDS53639|CCDS73296" Q8NBI2 23249217 MGI:2686925 RGD:1304670 +HGNC:26804 CYB561D1 cytochrome b561 family member D1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "FLJ39035|FLJ44753" "cytochrome b-561 domain containing 1|cytochrome b561 family, member D1" Cytochrome b561 497 2004-04-27 2015-11-18 2016-10-05 284613 ENSG00000174151 OTTHUMG00000011051 uc010ovn.3 AK096354 NM_182580 "CCDS800|CCDS44188|CCDS44189|CCDS44190|CCDS44191" Q8N8Q1 23249217 MGI:1919273 RGD:1310829 CYB561D1 +HGNC:30253 CYB561D2 cytochrome b561 family member D2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "101F6|TSP10" putative tumor suppressor 101F6 "cytochrome b-561 domain containing 2|cytochrome b561 family, member D2" Cytochrome b561 497 2004-04-27 2015-11-18 2016-10-05 11068 ENSG00000114395 OTTHUMG00000156813 uc003dam.4 AF040704 NM_007022 CCDS2827 O14569 "9122200|11085536|23249217" MGI:1929280 RGD:1359644 CYB561D2 607068 +HGNC:2577 CYBA cytochrome b-245 alpha chain protein-coding gene gene with protein product Approved 16q24.2 16q24.2 p22-PHOX flavocytochrome b-558 alpha polypeptide cytochrome b-245, alpha polypeptide 1990-01-15 2016-03-17 2016-10-12 1535 ENSG00000051523 OTTHUMG00000173320 uc002flb.5 NM_000101 CCDS32504 P13498 2243141 MGI:1316658 RGD:620573 "CYBAbase: Mutation registry for autosomal recessive chronic granulomatous disease (CGD), deficiency of p22phox|http://structure.bmc.lu.se/idbase/CYBAbase/|LRG_52|http://www.lrg-sequence.org/LRG/LRG_52" CYBA 608508 138719 +HGNC:2578 CYBB cytochrome b-245 beta chain protein-coding gene gene with protein product Approved Xp21.1-p11.4 Xp21.1-p11.4 "GP91-PHOX|NOX2" CGD "chronic granulomatous disease|cytochrome b-245, beta polypeptide" 1986-01-01 2016-05-16 2016-10-12 1536 ENSG00000165168 OTTHUMG00000033175 uc004ddr.3 X04011 NM_000397 CCDS14242 P04839 MGI:88574 RGD:620574 "CYBBbase: Mutation registry for X-linked chronic granulomatous disease (previously known as X-CDGbase)|http://structure.bmc.lu.se/idbase/CYBBbase/|LRG_53|http://www.lrg-sequence.org/LRG/LRG_53" CYBB 300481 120935 +HGNC:20797 CYBRD1 cytochrome b reductase 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "DCYTB|FLJ23462|FRRS3|CYB561A2" "ferric-chelate reductase 3|cytochrome b561 family, member A2" Cytochrome b561 497 2003-07-16 2016-10-05 79901 ENSG00000071967 OTTHUMG00000132260 uc002ugy.5 AK027115 NM_024843 "CCDS2244|CCDS46449|CCDS58736" Q53TN4 11230685 MGI:2654575 RGD:1305740 CYBRD1 605745 +HGNC:2579 CYC1 cytochrome c1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 UQCR4 "Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits|Apoptosome" "642|1341" 1988-07-06 2016-01-18 2016-10-05 1537 ENSG00000179091 OTTHUMG00000165242 uc003zaz.6 BC001006 NM_001916 CCDS6415 P08574 MGI:1913695 RGD:1306597 CYC1 123980 363276 +HGNC:19986 CYCS cytochrome c, somatic protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "HCS|CYC" 2002-12-16 2016-10-12 54205 ENSG00000172115 OTTHUMG00000128495 uc003sxl.4 M22877 NM_018947 CCDS5393 P99999 11790791 MGI:88578 RGD:2451 LRG_876|http://www.lrg-sequence.org/LRG/LRG_876 CYCS 123970 173240 +HGNC:20095 CYCSP1 cytochrome c, somatic pseudogene 1 pseudogene pseudogene Approved 14q24.3 14q24.3 "HC5|HCP36" 2003-09-24 2013-10-17 122950 ENSG00000271423 OTTHUMG00000184602 M22886 NG_002985 2849112 PGOHUM00000248234 +HGNC:24410 CYCSP2 cytochrome c, somatic pseudogene 2 pseudogene pseudogene Approved 15q15.1 15q15.1 HCP37 2004-08-25 2013-10-17 360183 ENSG00000259547 OTTHUMG00000172522 AF533198 NG_002986 12909341 PGOHUM00000247096 +HGNC:24395 CYCSP3 cytochrome c, somatic pseudogene 3 pseudogene pseudogene Approved 8p12 08p12 "HCP21|HS7" 2004-08-25 2005-03-08 349198 M22893 NG_002971 "2849112|12909341" +HGNC:24413 CYCSP4 cytochrome c, somatic pseudogene 4 pseudogene pseudogene Approved 1q32.1 01q32.1 HCP4 2005-04-29 2013-10-17 360157 ENSG00000229120 OTTHUMG00000041382 AF533165 NG_002955 12909341 PGOHUM00000244389 +HGNC:24416 CYCSP5 cytochrome c, somatic pseudogene 5 pseudogene pseudogene Approved 1q44 01q44 HCP5 2005-04-29 2013-10-17 360158 ENSG00000227735 OTTHUMG00000040399 AF533166 NG_002956 "12909341|12815422" PGOHUM00000244524 +HGNC:24421 CYCSP6 cytochrome c, somatic pseudogene 6 pseudogene pseudogene Approved 2p12 02p12 HCP6 2005-04-29 2013-10-17 360159 ENSG00000214429 OTTHUMG00000152870 AF533167 NG_002957 12909341 PGOHUM00000240106 +HGNC:24422 CYCSP7 cytochrome c, somatic pseudogene 7 pseudogene pseudogene Approved 2q11.2 02q11.2 HCP7 2005-04-29 2005-08-09 164837 AF533168 NG_002958 12909341 +HGNC:24423 CYCSP8 cytochrome c, somatic pseudogene 8 pseudogene pseudogene Approved 2q21.1 02q21.1 HCP8 2005-04-29 2013-10-17 360160 ENSG00000232503 OTTHUMG00000154067 AF533169 NG_002959 12909341 PGOHUM00000240936 +HGNC:24384 CYCSP10 cytochrome c, somatic pseudogene 10 pseudogene pseudogene Approved 3p25.3 03p25.3 HCP10 2005-04-29 2012-11-08 360166 ENSG00000232901 OTTHUMG00000155302 AF533171 NG_002961 12909341 PGOHUM00000237527 +HGNC:24385 CYCSP11 cytochrome c, somatic pseudogene 11 pseudogene pseudogene Approved 3p25.3 03p25.3 HCP11 2005-04-29 2013-10-17 360167 ENSG00000229217 OTTHUMG00000155399 AF533172 NG_002962 12909341 PGOHUM00000237530 +HGNC:24386 CYCSP12 cytochrome c, somatic pseudogene 12 pseudogene pseudogene Approved 3p25.2 03p25.2 "HCP12|HCP13" CYCSP13 cytochrome c, somatic pseudogene 13 2005-04-29 2012-11-08 360168 ENSG00000224263 OTTHUMG00000155299 AF533173 NG_002963 12909341 PGOHUM00000237534 +HGNC:24388 CYCSP14 cytochrome c, somatic pseudogene 14 pseudogene pseudogene Approved 4q28.2 04q28.2 HCP14 2005-04-29 2005-08-09 360170 AF533175 NG_002965 12909341 +HGNC:24389 CYCSP16 cytochrome c, somatic pseudogene 16 pseudogene pseudogene Approved 6q15 06q15 HCP16 2005-04-29 2005-08-09 2006-11-29 360171 AF533177 NG_002966 12909341 +HGNC:24390 CYCSP17 cytochrome c, somatic pseudogene 17 pseudogene pseudogene Approved 6q16.1 06q16.1 HCP17 2005-04-29 2013-10-17 360172 ENSG00000219627 OTTHUMG00000015233 AF533178 NG_002967 12909341 PGOHUM00000243714 +HGNC:24391 CYCSP18 cytochrome c, somatic pseudogene 18 pseudogene pseudogene Approved 7q21.3 07q21.3 HCP18 2005-04-29 2005-08-09 360173 AF533179 NG_002968 12909341 +HGNC:24392 CYCSP19 cytochrome c, somatic pseudogene 19 pseudogene pseudogene Approved 7q31.31 07q31.31 HCP19 2005-04-29 2013-10-17 360174 ENSG00000213310 OTTHUMG00000157004 AF533180 NG_002969 12909341 PGOHUM00000233540 +HGNC:24394 CYCSP20 cytochrome c, somatic pseudogene 20 pseudogene pseudogene Approved 7q32.1 07q32.1 HCP20 2005-04-29 2013-10-17 349158 ENSG00000240416 OTTHUMG00000158419 AF533181 NG_002970 12909341 PGOHUM00000232990 +HGNC:24396 CYCSP22 cytochrome c, somatic pseudogene 22 pseudogene pseudogene Approved 8q11.21 08q11.21 HCP22 2005-04-29 2016-10-05 360175 ENSG00000254358 OTTHUMG00000164260 AF533183 NG_002972 12909341 PGOHUM00000249337 +HGNC:24397 CYCSP23 cytochrome c, somatic pseudogene 23 pseudogene pseudogene Approved 8q24.12 08q24.12 HCP23 2005-04-29 2014-04-09 360176 ENSG00000253495 OTTHUMG00000164996 AF533184 NG_002973 12909341 +HGNC:24398 CYCSP24 cytochrome c, somatic pseudogene 24 pseudogene pseudogene Approved 9q22.32 09q22.32 "HCP24|HC3|HCP31" 2005-03-08 2013-10-17 360177 ENSG00000227666 OTTHUMG00000020257 M22880 NG_002974 "2849112|12909341" PGOHUM00000236710 +HGNC:24399 CYCSP25 cytochrome c, somatic pseudogene 25 pseudogene pseudogene Approved 11p13 11p13 "HC10|HCP25" 2005-03-08 2013-10-17 120528 ENSG00000255370 OTTHUMG00000166209 M22892 NG_002975 "2849112|12909341" PGOHUM00000242202 +HGNC:24400 CYCSP26 cytochrome c, somatic pseudogene 26 pseudogene pseudogene Approved 11q12.1 11q12.1 HCP26 2005-04-29 2013-10-17 360178 ENSG00000254601 OTTHUMG00000167387 AF533187 NG_002976 12909341 PGOHUM00000242740 +HGNC:24401 CYCSP27 cytochrome c, somatic pseudogene 27 pseudogene pseudogene Approved 11q13.4 11q13.4 HCP27 2005-04-29 2013-10-17 341148 ENSG00000255444 OTTHUMG00000165643 AF533188 NG_002977 12909341 PGOHUM00000242804 +HGNC:24402 CYCSP28 cytochrome c, somatic pseudogene 28 pseudogene pseudogene Approved 11q14.1 11q14.1 HCP28 2005-04-29 2013-10-17 360179 ENSG00000255003 OTTHUMG00000167092 AF533189 NG_002978 12909341 PGOHUM00000242827 +HGNC:24403 CYCSP29 cytochrome c, somatic pseudogene 29 pseudogene pseudogene Approved 11q22.3 11q22.3 HCP29 2005-04-29 2013-10-17 360180 ENSG00000255379 OTTHUMG00000166543 AF533190 NG_002979 12909341 PGOHUM00000242473 +HGNC:24405 CYCSP30 cytochrome c, somatic pseudogene 30 pseudogene pseudogene Approved 12q21.32 12q21.32 HCP30 2005-04-29 2013-10-17 121026 ENSG00000257648 OTTHUMG00000169863 AF533191 NG_002980 12909341 PGOHUM00000251023 +HGNC:24406 CYCSP32 cytochrome c, somatic pseudogene 32 pseudogene pseudogene Approved 13q12.11 13q12.11 HCP32 2005-04-29 2011-04-01 360181 ENSG00000223625 OTTHUMG00000016492 AF533193 NG_002981 12909341 PGOHUM00000248309 +HGNC:24407 CYCSP33 cytochrome c, somatic pseudogene 33 pseudogene pseudogene Approved 13q12.12 13q12.12 HCP33 2005-04-29 2010-12-03 221180 ENSG00000233545 OTTHUMG00000016581 AF533194 NG_002982 12909341 PGOHUM00000248534 +HGNC:24408 CYCSP34 cytochrome c, somatic pseudogene 34 pseudogene pseudogene Approved 13q14.11 13q14.11 HCP34 2005-04-28 2011-04-01 360182 ENSG00000176268 OTTHUMG00000016778 AF533195 NG_002983 12909341 PGOHUM00000248376 +HGNC:24409 CYCSP35 cytochrome c, somatic pseudogene 35 pseudogene pseudogene Approved 13q32.2 13q32.2 "HCP35|HC8" 2005-03-08 2011-04-01 121916 ENSG00000233549 OTTHUMG00000017252 M22891 NG_002984 "2849112|12909341" PGOHUM00000248474 +HGNC:24411 CYCSP38 cytochrome c, somatic pseudogene 38 pseudogene pseudogene Approved 15q22.2 15q22.2 "HCP38|HC2" 2005-03-08 2013-10-17 360184 ENSG00000259513 OTTHUMG00000172105 M22879 NG_002987 "2849112|12909341" PGOHUM00000247140 +HGNC:24412 CYCSP39 cytochrome c, somatic pseudogene 39 pseudogene pseudogene Approved 16p12.1 16p12.1 "HC1|HCP39" 2005-03-08 2013-09-20 342358 ENSG00000260690 OTTHUMG00000177071 M22878 NG_002988 "2849112|12909341" PGOHUM00000250647 +HGNC:24414 CYCSP40 cytochrome c, somatic pseudogene 40 pseudogene pseudogene Approved 17q25.2 17q25.2 "HCP40|HC7" 2005-03-08 2015-07-22 360185 ENSG00000262870 OTTHUMG00000177326 M22890 NG_002989 "2849112|12909341" PGOHUM00000294224 +HGNC:2580 CYCSP41 cytochrome c, somatic pseudogene 41 pseudogene pseudogene Approved 21p11.2 21p11.2 HCP41 CYC1LP4 cytochrome c-1-like pseudogene 4 2000-05-23 2005-04-28 2005-04-28 2015-02-02 360186 ENSG00000278678 OTTHUMG00000188253 AF533202 NG_002990 12909341 PGOHUM00000297330 +HGNC:2581 CYCSP42 cytochrome c, somatic pseudogene 42 pseudogene pseudogene Approved 21q21.1 21q21.1 CYC1LP5 cytochrome c-1-like pseudogene 5 2000-05-23 2005-04-28 2005-04-28 2011-02-24 343727 ENSG00000224524 OTTHUMG00000074331 AF533203 NG_002991 12909341 PGOHUM00000239036 +HGNC:24417 CYCSP43 cytochrome c, somatic pseudogene 43 pseudogene pseudogene Approved Xq13.1 Xq13.1 HCP43 2005-04-28 2013-10-17 360187 ENSG00000231706 OTTHUMG00000021755 AF533204 NG_002992 12909341 PGOHUM00000241369 +HGNC:24418 CYCSP44 cytochrome c, somatic pseudogene 44 pseudogene pseudogene Approved Xq27.3 Xq27.3 HCP44 2005-04-29 2013-10-17 349391 ENSG00000233548 OTTHUMG00000022591 AF533205 NG_002993 12909341 PGOHUM00000242059 +HGNC:24419 CYCSP45 cytochrome c, somatic pseudogene 45 pseudogene pseudogene Approved Xq28 Xq28 HCP45 2005-04-29 2013-10-17 352852 ENSG00000184844 OTTHUMG00000024210 AF533206 NG_002994 12909341 PGOHUM00000242093 +HGNC:23941 CYCSP46 cytochrome c, somatic pseudogene 46 pseudogene pseudogene Approved Yq11.221 Yq11.221 "HCP46|HCP47" 2005-04-29 2014-11-19 286550 ENSG00000227949 OTTHUMG00000036621 AF533208 NG_002926 "12815422|12909341" PGOHUM00000233752 +HGNC:23942 CYCSP48 cytochrome c, somatic pseudogene 48 pseudogene pseudogene Approved Yq11.23 Yq11.23 HCP48 2005-04-29 2016-10-05 360188 ENSG00000233843 OTTHUMG00000036766 AF533209 NG_002995 "12909341|12815422" PGOHUM00000234099 +HGNC:23943 CYCSP49 cytochrome c, somatic pseudogene 49 pseudogene pseudogene Approved Yq11.23 Yq11.23 HCP49 CYCSP54 cytochrome c, somatic pseudogene 54 2005-04-29 2016-10-05 360009 ENSG00000224240 OTTHUMG00000036760 AF533210 NG_002999 "12909341|12815422" PGOHUM00000234103 +HGNC:24383 CYCSP51 cytochrome c, somatic pseudogene 51 pseudogene pseudogene Approved 1q21.3 01q21.3 HCP1 2005-04-29 2013-10-17 343045 ENSG00000229357 OTTHUMG00000035013 AF533162 NG_002953 12909341 PGOHUM00000244999 +HGNC:24393 CYCSP52 cytochrome c, somatic pseudogene 52 pseudogene pseudogene Approved 1q23.1 01q23.1 "HCP2|HC6" 2005-03-08 2013-10-17 360155 ENSG00000235700 OTTHUMG00000041326 M22889 NR_001560 "2849112|12909341" CYCSP52 PGOHUM00000245019 +HGNC:24404 CYCSP53 cytochrome c, somatic pseudogene 53 pseudogene pseudogene Approved 1q24.3 01q24.3 HCP3 2005-04-29 2013-10-17 360156 ENSG00000234333 OTTHUMG00000057643 AF533164 NG_002954 12909341 PGOHUM00000244332 +HGNC:21252 CYCSP55 cytochrome c, somatic pseudogene 55 pseudogene pseudogene Approved 6p21.31 06p21.31 "bA513I15.3|HCP15" CYCSL1 "cytochrome c, somatic-like 1|cytochrome c, somatic-like 1 (pseudogene)" 2003-11-26 2010-10-12 2010-10-12 2014-11-19 157317 ENSG00000214810 OTTHUMG00000014540 NG_007352 12909341 PGOHUM00000243598 +HGNC:24424 CYCTP cytochrome c, testis, pseudogene pseudogene pseudogene Approved 2q31.2 02q31.2 HCP9 2010-03-12 2014-11-19 360163 ENSG00000249909 OTTHUMG00000154943 NG_002960 "12909341|20210993" MGI:88579 +HGNC:13759 CYFIP1 cytoplasmic FMR1 interacting protein 1 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 "KIAA0068|P140SRA-1|SHYC" "selective hybridizing clone|cytoplasmic FMRP interacting protein 1" 2002-05-23 2015-02-02 23191 ENSG00000273749 OTTHUMG00000129100 uc001yus.5 D38549 NM_014608 "CCDS73695|CCDS73696" Q7L576 11438699 MGI:1338801 RGD:1310332 CYFIP1 606322 +HGNC:13760 CYFIP2 cytoplasmic FMR1 interacting protein 2 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 PIR121 p53 inducible protein 2002-05-23 2015-09-11 26999 ENSG00000055163 OTTHUMG00000163484 uc032vpr.2 AF160973 NM_001037332 "CCDS75364|CCDS78077|CCDS78078" Q96F07 11438699 MGI:1924134 RGD:1305048 CYFIP2 606323 +HGNC:16505 CYGB cytoglobin protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "HGB|STAP" "stellate cell activation-associated protein|histoglobin" 2001-09-21 2015-07-22 114757 ENSG00000161544 OTTHUMG00000180289 uc002jru.3 AJ315162 NM_134268 CCDS11746 Q8WWM9 11919282 MGI:2149481 RGD:69415 CYGB 608759 +HGNC:17806 CYHR1 cysteine and histidine rich 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "CHRP|KIAA0496|MGC13010" cysteine/histidine-rich 1 2001-12-17 2016-06-06 2016-10-05 50626 ENSG00000187954 OTTHUMG00000165171 uc003zcv.3 AB007965 NM_032687 "CCDS6426|CCDS47943|CCDS83335" Q6ZMK1 10745073 MGI:1859320 RGD:2318728 CYHR1 616635 +HGNC:2582 CYLC1 cylicin 1 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 cylicin, basic protein of sperm head cytoskeleton 1 1998-03-20 2016-02-22 2016-02-22 1538 ENSG00000183035 OTTHUMG00000021922 uc004eei.3 Z22780 NM_021118 "CCDS35341|CCDS75998" P35663 "7737358|8354692" MGI:1914657 RGD:2323810 CYLC1 300768 +HGNC:2583 CYLC2 cylicin 2 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 cylicin, basic protein of sperm head cytoskeleton 2 1998-03-20 2016-03-15 2016-10-05 1539 ENSG00000155833 OTTHUMG00000020396 uc004bbs.2 Z46788 NM_001340 CCDS35085 Q14093 7737358 MGI:1922164 RGD:1562799 CYLC2 604035 +HGNC:2584 CYLD CYLD lysine 63 deubiquitinase protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "KIAA0849|USPL2" ubiquitin specific peptidase like 2 CYLD1 cylindromatosis (turban tumor syndrome) Ubiquitin specific peptidases 366 1996-12-17 2016-02-17 2016-10-12 1540 ENSG00000083799 OTTHUMG00000173404 uc002egq.2 AB020656 XM_017022977 "CCDS42164|CCDS45482" Q9NQC7 7493027 MGI:1921506 RGD:1308346 LRG_491|http://www.lrg-sequence.org/LRG/LRG_491 CYLD 605018 120940 C67.001 +HGNC:2587 CYMD cystoid macular dystrophy phenotype phenotype only Approved 7p 07p "DCMD|MDDC" 1994-07-12 2011-02-11 1541 8004098 153880 +HGNC:2588 CYMP chymosin pseudogene pseudogene pseudogene Approved 1p13.3 01p13.3 1991-07-16 2010-04-28 643160 ENSG00000240194 OTTHUMG00000022784 NR_003599 2071156 118943 A01.P02 +HGNC:2595 CYP1A1 cytochrome P450 family 1 subfamily A member 1 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "P450DX|P1-450|P450-C|CP11" CYP1 "cytochrome P450, subfamily I (aromatic compound-inducible), polypeptide 1|cytochrome P450, family 1, subfamily A, polypeptide 1" Cytochrome P450 family 1 1000 1986-01-01 2015-12-09 2015-12-09 1543 ENSG00000140465 OTTHUMG00000142812 uc002ayq.5 BC023019 NM_000499 "CCDS10268|CCDS81906" P04798 15128046 MGI:88588 RGD:2458 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP1A1 108330 objectId:1318 1.14.14.1 +HGNC:2596 CYP1A2 cytochrome P450 family 1 subfamily A member 2 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "P3-450|CP12" "cytochrome P450, subfamily I (aromatic compound-inducible), polypeptide 2|cytochrome P450, family 1, subfamily A, polypeptide 2" Cytochrome P450 family 1 1000 1990-04-25 2015-12-09 2015-12-09 1544 ENSG00000140505 OTTHUMG00000172901 uc002ayr.2 AF182274 NM_000761 CCDS32293 P05177 15128046 MGI:88589 RGD:2459 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP1A2 124060 284125 objectId:1319 1.14.14.1 +HGNC:2597 CYP1B1 cytochrome P450 family 1 subfamily B member 1 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 CP1B GLC3A "cytochrome P450, subfamily I (dioxin-inducible), polypeptide 1 (glaucoma 3, primary infantile)|cytochrome P450, family 1, subfamily B, polypeptide 1" Cytochrome P450 family 1 1000 1994-12-20 2015-12-09 2015-12-09 1545 ENSG00000138061 OTTHUMG00000100970 uc032njx.2 U56438 NM_000104 CCDS1793 Q16678 "8175734|15128046" MGI:88590 RGD:2460 Human Cytochrome P450 (CYP)Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP1B1 601771 120977 objectId:1320 +HGNC:28543 CYP1B1-AS1 CYP1B1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p22.2 02p22.2 MGC34824 C2orf58 "chromosome 2 open reading frame 58|CYP1B1 antisense RNA 1 (non-protein coding)" 2007-06-14 2011-04-28 2012-08-15 2014-11-19 285154 ENSG00000232973 OTTHUMG00000128569 uc061ihc.1 BC031410 NR_027252 12477932 +HGNC:39968 CYP1D1P cytochrome P450 family 1 subfamily D member 1, pseudogene pseudogene pseudogene Approved 9q21.13 09q21.13 CYP1A8P cytochrome P450, family 1, subfamily D, polypeptide 1, pseudogene Cytochrome P450 family 1 1000 2011-07-29 2015-12-09 2015-12-09 100133307 ENSG00000228024 OTTHUMG00000020017 NG_023158 PGOHUM00000236640 +HGNC:2610 CYP2A6 cytochrome P450 family 2 subfamily A member 6 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "CPA6|CYP2A" CYP2A3 "cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 6|cytochrome P450, family 2, subfamily A, polypeptide 6" Cytochrome P450 family 2 1001 1994-12-20 2015-12-09 2015-12-09 1548 ENSG00000255974 OTTHUMG00000182713 uc002opl.4 AF182275 NM_000762 CCDS12568 P11509 "7668294|2748347" "MGI:88596|MGI:88597" Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2A6 122720 objectId:1321 +HGNC:2611 CYP2A7 cytochrome P450 family 2 subfamily A member 7 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CYP2A "cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 7|cytochrome P450, family 2, subfamily A, polypeptide 7" Cytochrome P450 family 2 1001 1995-12-13 2015-12-09 2015-12-09 1549 ENSG00000198077 OTTHUMG00000182715 uc002opm.3 NM_000764 NM_030589 CCDS12569 P20853 "7668294|15128046" "MGI:88596|MGI:88597" RGD:2465 CYP2A7 608054 objectId:1322 +HGNC:2612 CYP2A7P1 cytochrome P450 family 2 subfamily A member 7 pseudogene 1 pseudogene pseudogene Approved 19q13.2 19q13.2 "CYP2A18PN|CYP2A7PT" CYP2A7P2 "cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 7, pseudogene 1|cytochrome P450, family 2, subfamily A, polypeptide 7 pseudogene 1" Cytochrome P450 family 2 1001 1995-12-13 2015-12-09 2015-12-09 1550 ENSG00000213908 OTTHUMG00000182830 U22030 NG_029327 7668294 CYP2A7P1 PGOHUM00000263648 +HGNC:2608 CYP2A13 cytochrome P450 family 2 subfamily A member 13 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "CPAD|CYP2A" "cytochrome P450, subfamily IIA (phenobarbital-inducible), polypeptide 13|cytochrome P450, family 2, subfamily A, polypeptide 13" Cytochrome P450 family 2 1001 1995-12-13 2015-12-09 2015-12-09 1553 ENSG00000197838 OTTHUMG00000182762 uc002opt.5 U22028 NM_000766 CCDS12571 Q16696 "7668294|15128046" "MGI:88596|MGI:88597" Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2A13 608055 objectId:1323 +HGNC:39975 CYP2AB1P cytochrome P450 family 2 subfamily AB member 1, pseudogene pseudogene pseudogene Approved 3q27.1 03q27.1 cytochrome P450, family 2, subfamily AB, polypeptide 1, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 647265 ENSG00000233441 OTTHUMG00000156889 NG_046139 MGI:3644957 PGOHUM00000299299 +HGNC:39976 CYP2AC1P cytochrome P450 family 2 subfamily AC member 1, pseudogene pseudogene pseudogene Approved 6p12.3 06p12.3 cytochrome P450, family 2, subfamily AC, polypeptide 1, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 106478960 ENSG00000216998 OTTHUMG00000014821 NG_045223 +HGNC:2607 CYP2A entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-12-09 +HGNC:2615 CYP2B6 cytochrome P450 family 2 subfamily B member 6 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "CPB6|CYPIIB6" CYP2B "cytochrome P450, subfamily IIB (phenobarbital-inducible), polypeptide 6|cytochrome P450, family 2, subfamily B|cytochrome P450, subfamily IIB (phenobarbital-inducible)|cytochrome P450, family 2, subfamily B, polypeptide 6" Cytochrome P450 family 2 1001 1995-12-13 2015-12-09 2015-12-09 1555 ENSG00000197408 OTTHUMG00000182714 uc002opr.2 AF182277 NM_000767 CCDS12570 P20813 "7668294|15128046" MGI:88598 RGD:628627 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2B6 123930 241987 objectId:1324 +HGNC:2616 CYP2B7P cytochrome P450 family 2 subfamily B member 7, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 CYP2B CYP2B7P1 "cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1|cytochrome P450, family 2, subfamily B, polypeptide 7, pseudogene" Cytochrome P450 family 2 1001 1995-12-13 2013-11-15 2015-12-09 2015-12-09 1556 ENSG00000256612 OTTHUMG00000182706 BC041174 NR_001278 "7668294|15128046" PGOHUM00000234698 +HGNC:2622 CYP2C8 cytochrome P450 family 2 subfamily C member 8 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 CPC8 "cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 8|cytochrome P450, family 2, subfamily C, polypeptide 8" Cytochrome P450 family 2 1001 1991-07-31 2015-12-09 2016-10-05 1558 ENSG00000138115 OTTHUMG00000018804 uc001kkb.4 M17397 NM_000770 "CCDS7438|CCDS55721|CCDS73166" P10632 7841444 "MGI:103238|MGI:1306818|MGI:1306819" RGD:1308166 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2C8 601129 objectId:1325 +HGNC:2623 CYP2C9 cytochrome P450 family 2 subfamily C member 9 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 P450IIC9 CYP2C10 "cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 9|cytochrome P450, family 2, subfamily C, polypeptide 9" Cytochrome P450 family 2 1001 1992-04-06 2015-12-09 2016-10-05 1559 ENSG00000138109 OTTHUMG00000018805 uc001kka.5 M61855 NM_000771 CCDS7437 P11712 "2009263|7841444" "MGI:1917138|MGI:1919553" RGD:2469 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2C9 601130 241965 objectId:1326 +HGNC:2620 CYP2C18 cytochrome P450 family 2 subfamily C member 18 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "P450IIC17|CPCI|CYP2C" CYP2C17 "cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 18|cytochrome P450, family 2, subfamily C, polypeptide 18" Cytochrome P450 family 2 1001 1992-02-12 2015-12-09 2016-10-05 1562 ENSG00000108242 OTTHUMG00000018796 uc001kjv.6 M61853 NM_000772 "CCDS7435|CCDS44460" P33260 "1896026|2009263" MGI:1919332 CYP2C18 601131 objectId:1327 +HGNC:2621 CYP2C19 cytochrome P450 family 2 subfamily C member 19 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "P450IIC19|CPCJ" CYP2C "cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 19|cytochrome P450, family 2, subfamily C, polypeptide 19" Cytochrome P450 family 2 1001 1992-04-06 2015-12-09 2016-10-05 1557 ENSG00000165841 OTTHUMG00000018799 uc010qnz.3 M61854 NM_000769 CCDS7436 P33261 "2009263|8530044" RGD:619934 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2C19 124020 241960 objectId:1328 +HGNC:39970 CYP2C23P cytochrome P450 family 2 subfamily C member 23, pseudogene pseudogene pseudogene Approved 10q24.2 10q24.2 CYP2C62P "cytochrome P450, family 2, subfamily C, polypeptide 62, pseudogene|cytochrome P450, family 2, subfamily C, polypeptide 23, pseudogene" Cytochrome P450 family 2 1001 2011-07-29 2013-07-30 2015-12-09 2015-12-09 107436076 NG_046831 PGOHUM00000238611 +HGNC:39971 CYP2C56P cytochrome P450 family 2 subfamily C member 56, pseudogene pseudogene pseudogene Approved 2q24.3 02q24.3 CYP2C-se1[7] cytochrome P450, family 2, subfamily C, polypeptide 56, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 106478959 ENSG00000229641 OTTHUMG00000153935 NG_043798 PGOHUM00000241006 +HGNC:39969 CYP2C58P cytochrome P450 family 2 subfamily C member 58, pseudogene pseudogene pseudogene Approved 10q23.33 10q23.33 cytochrome P450, family 2, subfamily C, polypeptide 58, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 106480430 ENSG00000235199 OTTHUMG00000018797 NG_043298 +HGNC:42406 CYP2C59P cytochrome P450 family 2 subfamily C member 59, pseudogene pseudogene pseudogene Approved 10q23.33 10q23.33 CYP2C9-de2c3c cytochrome P450, family 2, subfamily C, polypeptide 59, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 100874505 ENSG00000228460 OTTHUMG00000018802 NG_032713 PGOHUM00000238595 +HGNC:42410 CYP2C60P cytochrome P450 family 2 subfamily C member 60, pseudogene pseudogene pseudogene Approved 10q23.33 10q23.33 CYP2C8-de6b cytochrome P450, family 2, subfamily C, polypeptide 60, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 106480748 ENSG00000260863 OTTHUMG00000172690 NG_043778 +HGNC:39972 CYP2C61P cytochrome P450 family 2 subfamily C member 61, pseudogene pseudogene pseudogene Approved 10q21.3 10q21.3 CYP2C-se2[1:2] cytochrome P450, family 2, subfamily C, polypeptide 61, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 106480734 ENSG00000270648 OTTHUMG00000184693 NG_043673 PGOHUM00000238505 +HGNC:42411 CYP2C63P cytochrome P450 family 2 subfamily C member 63, pseudogene pseudogene pseudogene Approved 21q21.3 21q21.3 CYP2C-se3[1] cytochrome P450, family 2, subfamily C, polypeptide 63, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 107063541 NG_046359 +HGNC:39974 CYP2C64P cytochrome P450 family 2 subfamily C member 64, pseudogene pseudogene pseudogene Approved Xq28 Xq28 CYP2C-se4[1] cytochrome P450, family 2, subfamily C, polypeptide 64, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 PGOHUM00000242077 +HGNC:42405 CYP2C115P cytochrome P450 family 2 subfamily C member 115, pseudogene pseudogene pseudogene Approved 10q23.33 10q23.33 CYP2C9-de1b cytochrome P450, family 2, subfamily C, polypeptide 115, pseudogene Cytochrome P450 family 2 1001 2011-07-29 2015-12-09 2015-12-09 100874513 NG_032714 PGOHUM00000238895 +HGNC:2625 CYP2D6 cytochrome P450 family 2 subfamily D member 6 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "CPD6|P450-DB1|CYP2D|P450C2D" "CYP2DL1|CYP2D7P2|CYP2D7BP|CYP2D8P2|CYP2D7AP" "cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolizing), polypeptide 6|cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 2|cytochrome P450, subfamily II (debrisoquine, sparteine, etc., -metabolising), polypeptide 7 pseudogene 2|cytochrome P450, family 2, subfamily D, polypeptide 8 pseudogene 2|cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolising), polypeptide 8 pseudogene 2|cytochrome P450, family 2, subfamily D, polypeptide 6" Cytochrome P450 family 2 1001 1992-04-07 2015-12-09 2016-10-12 1565 ENSG00000100197 OTTHUMG00000150918 uc003bce.4 M20403 XM_011529966 "CCDS33657|CCDS46721" P10635 8449513 RGD:620640 "Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_303|http://www.lrg-sequence.org/LRG/LRG_303" CYP2D6 124030 241953 objectId:1329 +HGNC:2624 CYP2D7 cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene) protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "CYP2D|CYP2D@|CYP2D7P1|CYP2D7P" "cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolizing) cluster|cytochrome P450, family 2, subfamily D, polypeptide 7 pseudogene 1|cytochrome P450, family 2, subfamily D, polypeptide 7 (gene/pseudogene)" Cytochrome P450 family 2 1001 1986-01-01 2014-10-14 2015-12-09 2015-12-09 1564 ENSG00000205702 OTTHUMG00000030222 M33387 NR_002570 A0A087X1C5 17494644 RGD:708427 +HGNC:2628 CYP2D8P ccytochrome P450 family 2 subfamily D member 8, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 "CYP2DP1|CYP2D8P1" "cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolizing), polypeptide 8 pseudogene 1|cytochrome P450, family 2, subfamily D, polypeptide 8 pseudogene 1|cytochrome P450, family 2, subfamily D, polypeptide 8, pseudogene" Cytochrome P450 family 2 1001 1992-04-07 2013-11-15 2015-12-09 2015-12-09 1568 ENSG00000226450 OTTHUMG00000150922 M33387 NG_000854 1766873 PGOHUM00000259709 +HGNC:2631 CYP2E1 cytochrome P450 family 2 subfamily E member 1 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 CYP2E "cytochrome P450, subfamily IIE (ethanol-inducible), polypeptide 1|cytochrome P450, family 2, subfamily E, polypeptide 1" Cytochrome P450 family 2 1001 1988-03-03 2002-09-13 2015-12-09 2015-12-09 1571 ENSG00000130649 OTTHUMG00000019322 uc057xaa.1 J02843 NM_000773 CCDS7686 P05181 MGI:88607 RGD:2475 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2E1 124040 objectId:1330 +HGNC:2632 CYP2F1 cytochrome P450 family 2 subfamily F member 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CYP2F "cytochrome P450, subfamily IIF, polypeptide 1|cytochrome P450, family 2, subfamily F, polypeptide 1" Cytochrome P450 family 2 1001 1990-09-30 2015-12-09 2016-10-05 1572 ENSG00000197446 OTTHUMG00000167412 uc002opu.2 J02906 NM_000774 CCDS12572 P24903 MGI:88608 RGD:2476 CYP2F1 124070 objectId:1331 +HGNC:18851 CYP2F2P cytochrome P450 family 2 subfamily F member 2, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 CYP2F1P "cytochrome P450, subfamily IIF, polypeptide 1 pseudogene|cytochrome P450, family 2, subfamily F, polypeptide 1 pseudogene|cytochrome P450, family 2, subfamily F, polypeptide 2, pseudogene" Cytochrome P450 family 2 1001 2002-07-05 2013-11-15 2015-12-09 2015-12-09 171427 ENSG00000237118 OTTHUMG00000154548 AF372495 NG_029339 11827709 MGI:88608 +HGNC:2633 CYP2G1P cytochrome P450 family 2 subfamily G member 1, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 CYP2GP1 CYP2G1 cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene Cytochrome P450 family 2 1001 1999-10-05 2004-10-15 2015-12-09 2015-12-09 22952 ENSG00000130612 OTTHUMG00000182772 AF274766 NR_040249 Q6ZSU1 "8561797|11186129" MGI:109612 601133 +HGNC:15653 CYP2G2P cytochrome P450 family 2 subfamily G member 2, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 CYP2GP2 CYP2G2 "cytochrome P450, family 2, subfamily G, polypeptide 2|cytochrome P450, family 2, subfamily G, polypeptide 2 pseudogene" Cytochrome P450 family 2 1001 2001-05-01 2004-10-15 2015-12-09 2015-12-09 83757 ENSG00000268101 OTTHUMG00000182851 AF274762 NG_029337 "11186129|15128046" PGOHUM00000263649 +HGNC:2634 CYP2J2 cytochrome P450 family 2 subfamily J member 2 protein-coding gene gene with protein product Approved 1p32.1 01p32.1 "cytochrome P450, subfamily IIJ (arachidonic acid epoxygenase) polypeptide 2|cytochrome P450, family 2, subfamily J, polypeptide 2" Cytochrome P450 family 2 1001 1996-06-21 2015-12-09 2016-10-05 1573 ENSG00000134716 OTTHUMG00000008991 uc001czq.4 BC032594 NM_000775 CCDS613 P51589 9570962 MGI:1270148 RGD:620007 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2J2 601258 objectId:1332 +HGNC:20580 CYP2R1 cytochrome P450 family 2 subfamily R member 1 protein-coding gene gene with protein product Approved 11p15.2 11p15.2 cytochrome P450, family 2, subfamily R, polypeptide 1 Cytochrome P450 family 2 1001 2004-03-11 2015-12-09 2015-12-09 120227 ENSG00000186104 OTTHUMG00000165900 uc001mlr.4 AY323817 NM_024514 CCDS7818 Q6VVX0 "12464240|12867411" MGI:2449771 RGD:1311866 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2R1 608713 121000 objectId:1333 +HGNC:15654 CYP2S1 cytochrome P450 family 2 subfamily S member 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "cytochrome P450, subfamily IIS, polypeptide 1|cytochrome P450, family 2, subfamily S, polypeptide 1" Cytochrome P450 family 2 1001 2001-05-01 2015-12-09 2015-12-09 29785 ENSG00000167600 OTTHUMG00000182721 uc002opw.4 AA301039 XR_935812 CCDS12573 Q96SQ9 11181079 MGI:1921384 RGD:1306078 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP2S1 611529 objectId:1334 +HGNC:18852 CYP2T1P cytochrome P450 family 2 subfamily T member 1, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 CYP2T2P "cytochrome P450, subfamily IIT, polypeptide 2 pseudogene|cytochrome P450, family 2, subfamily T, polypeptide 2, pseudogene|cytochrome P450, family 2, subfamily T, polypeptide 1, pseudogene" Cytochrome P450 family 2 1001 2002-07-05 2014-11-25 2015-12-09 2015-12-09 171523 ENSG00000233622 OTTHUMG00000154549 NG_029340 11692077 MGI:2686296 PGOHUM00000234318 +HGNC:18853 CYP2T3P cytochrome P450 family 2 subfamily T member 3, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 "cytochrome P450, subfamily IIT, polypeptide 3 pseudogene|cytochrome P450, family 2, subfamily T, polypeptide 3, pseudogene" Cytochrome P450 family 2 1001 2002-07-05 2015-12-09 2015-12-09 163007 ENSG00000268529 OTTHUMG00000182855 AC008962 NG_029338 11692077 PGOHUM00000234700 +HGNC:20582 CYP2U1 cytochrome P450 family 2 subfamily U member 1 protein-coding gene gene with protein product Approved 4q25 04q25 SPG49 spastic paraplegia 49 cytochrome P450, family 2, subfamily U, polypeptide 1 Cytochrome P450 family 2 1001 2004-03-11 2015-12-09 2015-12-09 113612 ENSG00000155016 OTTHUMG00000161084 uc003hyp.4 BC012027 NM_183075 CCDS34047 Q7Z449 "14975754|14660610" MGI:1918769 RGD:1309433 CYP2U1 610670 321573 objectId:1335 +HGNC:20243 CYP2W1 cytochrome P450 family 2 subfamily W member 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "FLJ20359|MGC34287" cytochrome P450, family 2, subfamily W, polypeptide 1 Cytochrome P450 family 2 1001 2004-07-05 2015-12-09 2015-12-09 54905 ENSG00000073067 OTTHUMG00000074071 uc003sjq.1 AK000366 NM_017781 CCDS5319 Q8TAV3 MGI:3616076 RGD:1305193 CYP2W1 615967 objectId:1336 +HGNC:2637 CYP3A4 cytochrome P450 family 3 subfamily A member 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 CYP3A3 "cytochrome P450, subfamily IIIA (niphedipine oxidase), polypeptide 4|cytochrome P450, family 3, subfamily A, polypeptide 4" Cytochrome P450 family 3 1002 1990-02-24 2015-12-09 2016-10-05 1576 ENSG00000160868 OTTHUMG00000156651 uc064fwx.1 AF280107 XM_017011780 CCDS5674 P08684 "8269949|1391968" Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP3A4 124010 423802 objectId:1337 1.1.1.161 +HGNC:2638 CYP3A5 cytochrome P450 family 3 subfamily A member 5 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "PCN3|P450PCN3|CP35" "cytochrome P450, subfamily IIIA (niphedipine oxidase), polypeptide 5|cytochrome P450, family 3, subfamily A, polypeptide 5" Cytochrome P450 family 3 1002 1990-02-24 2015-12-09 2016-10-05 1577 ENSG00000106258 OTTHUMG00000156724 uc003urq.4 L26985 XR_001744568 "CCDS5672|CCDS55134" P20815 "MGI:88609|MGI:106099|MGI:1858451|MGI:2449818|MGI:3714859" RGD:708392 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP3A5 605325 241994 objectId:1338 +HGNC:18850 CYP3A5P2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-29 +HGNC:2640 CYP3A7 cytochrome P450 family 3 subfamily A member 7 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "CP37|P450-HFLA" "cytochrome P450, subfamily IIIA, polypeptide 7|cytochrome P450, family 3, subfamily A, polypeptide 7" Cytochrome P450 family 3 1002 1992-09-14 2015-12-09 2015-12-09 1551 ENSG00000160870 OTTHUMG00000156726 uc003uru.4 AF315325 NM_000765 CCDS5673 P24462 2722762 MGI:88610 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP3A7 605340 objectId:1339 +HGNC:51504 CYP3A7-CYP3A51P CYP3A7-CYP3A51P readthrough other readthrough Approved 7q22.1 07q22.1 2015-01-19 2015-07-22 100861540 ENSG00000282301 OTTHUMG00000191417 NM_001256497 CCDS75639 +HGNC:17450 CYP3A43 cytochrome P450 family 3 subfamily A member 43 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "cytochrome P450, subfamily IIIA, polypeptide 43|cytochrome P450, family 3, subfamily A, polypeptide 43" Cytochrome P450 family 3 1002 2002-07-05 2015-12-09 2016-10-05 64816 ENSG00000021461 OTTHUMG00000156498 uc003urx.3 AF319634 XM_017012542 "CCDS5675|CCDS5676|CCDS5677|CCDS64723" Q9HB55 "11160876|11266076" Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP3A43 606534 objectId:1340 +HGNC:42418 CYP3A51P cytochrome P450 family 3 subfamily A member 51, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 "CYP3A5-de13c|CYP3A5-de1b2b" CYP3A5P1 cytochrome P450, family 3, subfamily A, polypeptide 51, pseudogene Cytochrome P450 family 3 1002 2011-07-29 2015-12-09 2015-12-09 1578 ENSG00000282277 OTTHUMG00000191416 NG_000856 15937338 PGOHUM00000232935 +HGNC:42412 CYP3A52P cytochrome P450 family 3 subfamily A member 52, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 CYP3A43-de4c6c cytochrome P450, family 3, subfamily A, polypeptide 52, pseudogene Cytochrome P450 family 3 1002 2011-07-29 2015-12-09 2015-12-09 106478983 ENSG00000260524 OTTHUMG00000172692 NG_045113 +HGNC:42413 CYP3A54P cytochrome P450 family 3 subfamily A member 54, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 CYP3A-se1[2] cytochrome P450, family 3, subfamily A, polypeptide 54, pseudogene Cytochrome P450 family 3 1002 2011-07-29 2015-12-09 2015-12-09 106480749 ENSG00000261809 OTTHUMG00000172693 NG_043787 +HGNC:42419 CYP3A137P cytochrome P450 family 3 subfamily A member 137, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 CYP3A43-de1b cytochrome P450, family 3, subfamily A, polypeptide 137, pseudogene Cytochrome P450 family 3 1002 2011-07-29 2015-12-09 2015-12-09 107063543 ENSG00000261511 OTTHUMG00000172706 NG_046361 +HGNC:2635 CYP3A entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-12-09 +HGNC:2642 CYP4A11 cytochrome P450 family 4 subfamily A member 11 protein-coding gene gene with protein product Approved 1p33 01p33 CYP4AII CYP4A2 "cytochrome P450, subfamily IVA, polypeptide 11|cytochrome P450, family 4, subfamily A, polypeptide 11" Cytochrome P450 family 4 1003 1993-06-21 2015-12-09 2015-12-09 1579 ENSG00000187048 OTTHUMG00000008020 uc001cqp.5 L04751 NM_000778 CCDS543 Q02928 7679927 "MGI:88611|MGI:3028580|MGI:3717148" Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP4A11 601310 objectId:1341 +HGNC:20575 CYP4A22 cytochrome P450 family 4 subfamily A member 22 protein-coding gene gene with protein product Approved 1p33 01p33 cytochrome P450, family 4, subfamily A, polypeptide 22 Cytochrome P450 family 4 1003 2004-07-05 2015-12-09 2015-12-09 284541 ENSG00000162365 OTTHUMG00000007845 uc001cqv.2 XM_208213 "CCDS30707|CCDS76160" Q5TCH4 "MGI:88612|MGI:3611747" RGD:68945 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP4A22 615341 objectId:1342 +HGNC:43715 CYP4A22-AS1 CYP4A22 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p33 01p33 ncRNA-a3 CYP4A22 antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2012-02-02 2012-08-15 2014-10-22 104355148 ENSG00000225506 OTTHUMG00000007848 uc057ghd.1 BQ688560 20887892 cyp4a22-as1 +HGNC:39980 CYP4A26P cytochrome P450 family 4 subfamily A member 26, pseudogene pseudogene pseudogene Approved 1p33 01p33 CYP4A-se1[12] cytochrome P450, family 4, subfamily A, polypeptide 26, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2016-01-13 107080641 ENSG00000259832 OTTHUMG00000172700 NG_046399 +HGNC:42414 CYP4A27P cytochrome P450 family 4 subfamily A member 27, pseudogene pseudogene pseudogene Approved 1p33 01p33 CYP4A-se3[12] cytochrome P450, family 4, subfamily A, polypeptide 27, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2016-01-13 100422288 ENSG00000261593 OTTHUMG00000172702 NG_026935 +HGNC:42417 CYP4A43P cytochrome P450 family 4 subfamily A member 43, pseudogene pseudogene pseudogene Approved 1p33 01p33 CYP4A-se2[1] cytochrome P450, family 4, subfamily A, polypeptide 43, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 100874495 ENSG00000261196 OTTHUMG00000172701 NG_047005 +HGNC:42416 CYP4A44P cytochrome P450 family 4 subfamily A member 44, pseudogene pseudogene pseudogene Approved 1p33 01p33 CYP4A-se4[2] cytochrome P450, family 4, subfamily A, polypeptide 44, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 106481791 ENSG00000261290 OTTHUMG00000172696 NG_043918 +HGNC:2644 CYP4B1 cytochrome P450 family 4 subfamily B member 1 protein-coding gene gene with protein product Approved 1p33 01p33 "cytochrome P450, subfamily IVB, polypeptide 1|cytochrome P450, family 4, subfamily B, polypeptide 1" Cytochrome P450 family 4 1003 1990-09-10 2015-12-09 2015-12-09 1580 ENSG00000142973 OTTHUMG00000007984 uc001cqm.5 BC017758 NM_000779 "CCDS542|CCDS41328|CCDS81318" P13584 MGI:103225 RGD:2480 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP4B1 124075 objectId:1343 +HGNC:2645 CYP4F2 cytochrome P450 family 4 subfamily F member 2 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "cytochrome P450, subfamily IVF, polypeptide 2|cytochrome P450, family 4, subfamily F, polypeptide 2" Cytochrome P450 family 4 1003 1998-10-07 2015-12-09 2015-12-09 8529 ENSG00000186115 OTTHUMG00000185995 uc002nbs.2 U02388 NM_001082 CCDS12336 P78329 "8424651|8026587" MGI:1919304 CYP4F2 604426 286575 objectId:1344 +HGNC:2646 CYP4F3 cytochrome P450 family 4 subfamily F member 3 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 CYP4F LTB4H "cytochrome P450, subfamily IVF, polypeptide 3 (leukotriene B4 omega hydroxylase)|cytochrome P450, family 4, subfamily F, polypeptide 3" Cytochrome P450 family 4 1003 1995-12-15 2015-12-09 2015-12-09 4051 ENSG00000186529 OTTHUMG00000182374 uc002nbj.4 AB002454 NM_000896 "CCDS12332|CCDS59362" Q08477 "8486631|9539102" MGI:2158641 RGD:1305261 CYP4F3 601270 objectId:1345 +HGNC:2648 CYP4F8 cytochrome P450 family 4 subfamily F member 8 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "cytochrome P450, subfamily IVF, polypeptide 8|cytochrome P450, family 4, subfamily F, polypeptide 8" Cytochrome P450 family 4 1003 1999-09-20 2015-12-09 2015-12-09 11283 ENSG00000186526 OTTHUMG00000182386 uc032hoh.2 AF133298 NM_007253 CCDS74303 P98187 10405341 MGI:2146921 CYP4F8 611545 PGOHUM00000263459 objectId:1346 +HGNC:39940 CYP4F9P cytochrome P450 family 4 subfamily F member 9, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 9, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 100506916 ENSG00000267392 OTTHUMG00000182269 PGOHUM00000234188 +HGNC:39943 CYP4F10P cytochrome P450 family 4 subfamily F member 10, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 10, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 646575 ENSG00000267241 OTTHUMG00000182388 NG_032152 PGOHUM00000234532 +HGNC:13265 CYP4F11 cytochrome P450 family 4 subfamily F member 11 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "cytochrome P450, subfamily IVF, polypeptide 11|cytochrome P450, family 4, subfamily F, polypeptide 11" Cytochrome P450 family 4 1003 2001-05-17 2015-12-09 2016-10-05 57834 ENSG00000171903 OTTHUMG00000182294 uc002nbu.3 AF236085 NM_021187 CCDS12337 Q9HBI6 "10964514|9068972" MGI:3645508 CYP4F11 611517 objectId:1347 +HGNC:18857 CYP4F12 cytochrome P450 family 4 subfamily F member 12 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "cytochrome P450, subfamily IVF, polypeptide 12|cytochrome P450, family 4, subfamily F, polypeptide 12" Cytochrome P450 family 4 1003 2002-07-05 2015-12-09 2016-10-05 66002 ENSG00000186204 OTTHUMG00000164477 uc002nbl.4 AB035130 XM_017027172 CCDS42517 Q9HCS2 11162607 MGI:1927669 RGD:70926 CYP4F12 611485 objectId:1348 +HGNC:26820 CYP4F22 cytochrome P450 family 4 subfamily F member 22 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 FLJ39501 cytochrome P450, family 4, subfamily F, polypeptide 22 Cytochrome P450 family 4 1003 2007-05-18 2015-12-09 2015-12-09 126410 ENSG00000171954 OTTHUMG00000182451 uc002nbh.5 NM_173483 CCDS12331 Q6NT55 16436457 MGI:2445210 RGD:1308796 CYP4F22 611495 160003 objectId:1349 +HGNC:39944 CYP4F23P cytochrome P450 family 4 subfamily F member 23, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 23, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 100422238 ENSG00000269516 OTTHUMG00000182453 NG_024224 PGOHUM00000234531 +HGNC:39945 CYP4F24P cytochrome P450 family 4 subfamily F member 24, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 cytochrome P450, family 4, subfamily F, polypeptide 24, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 388514 ENSG00000267594 OTTHUMG00000182391 NR_033864 PGOHUM00000263634 +HGNC:39949 CYP4F25P cytochrome P450 family 4 subfamily F member 25, pseudogene pseudogene pseudogene Approved 9q13 09q13 CYP4F-se1[6:8] cytochrome P450, family 4, subfamily F, polypeptide 25, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2016-10-05 100288827 ENSG00000224106 OTTHUMG00000067335 NG_030091 PGOHUM00000236616 +HGNC:39948 CYP4F26P cytochrome P450 family 4 subfamily F member 26, pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 CYP4F-se2[6] cytochrome P450, family 4, subfamily F, polypeptide 26, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 106478958 ENSG00000226562 OTTHUMG00000000405 uc064sqh.1 NG_045577 PGOHUM00000236437 +HGNC:39946 CYP4F27P cytochrome P450 family 4 subfamily F member 27, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 CYP4F-se3[6:7:8] cytochrome P450, family 4, subfamily F, polypeptide 27, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 107133494 ENSG00000248313 OTTHUMG00000153629 NG_046652 PGOHUM00000240293 +HGNC:2647 CYP4F29P cytochrome P450 family 4 subfamily F member 29, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 CYP4F-se4[6:7:8] "C21orf15|CYP4F3LP" "cytochrome P450, subfamily IVF, polypeptide 3-like pseudogene|chromosome 21 open reading frame 15|cytochrome P450, family 4, subfamily F, polypeptide 3-like pseudogene|cytochrome P450, family 4, subfamily F, polypeptide 29, pseudogene" Cytochrome P450 family 4 1003 2000-05-23 2011-07-29 2015-12-09 2016-10-05 54055 ENSG00000228314 OTTHUMG00000074229 NG_000927 PGOHUM00000239026 +HGNC:25270 CYP4F30P cytochrome P450 family 4 subfamily F member 30, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 "DKFZp434F1719|4F-se9[6:7:8]" C2orf14 "chromosome 2 open reading frame 14|cytochrome P450, family 4, subfamily F, polypeptide 30, pseudogene" Cytochrome P450 family 4 1003 2004-01-09 2011-07-29 2015-12-09 2015-12-09 100132708 ENSG00000214081 OTTHUMG00000154046 AK093281 NR_023391 Q9H0H9 PGOHUM00000240934 +HGNC:39955 CYP4F31P cytochrome P450 family 4 subfamily F member 31, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 CYP4F-se10[6:7:8] cytochrome P450, family 4, subfamily F, polypeptide 31, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 107403068 NG_046788 CYP4F31P PGOHUM00000298719 +HGNC:39951 CYP4F32P cytochrome P450 family 4 subfamily F member 32, pseudogene pseudogene pseudogene Approved 2q11.1 02q11.1 CYP4F-se5[6:8] cytochrome P450, family 4, subfamily F, polypeptide 32, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 107133497 ENSG00000223564 OTTHUMG00000155129 NG_046655 PGOHUM00000240184 +HGNC:39952 CYP4F33P cytochrome P450 family 4 subfamily F member 33, pseudogene pseudogene pseudogene Approved 9p13.1 09p13.1 CYP4F-se6[6] cytochrome P450, family 4, subfamily F, polypeptide 33, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 107133499 ENSG00000259898 OTTHUMG00000172707 NG_046657 +HGNC:39953 CYP4F34P cytochrome P450 family 4 subfamily F member 34, pseudogene pseudogene pseudogene Approved 13q11 13q11 CYP4F-se7[6:7:8] cytochrome P450, family 4, subfamily F, polypeptide 34, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 100422247 ENSG00000244155 OTTHUMG00000016466 NG_024825 PGOHUM00000248289 +HGNC:39954 CYP4F35P cytochrome P450 family 4 subfamily F member 35, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 CYP4F-se8[6:7:8] cytochrome P450, family 4, subfamily F, polypeptide 35, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 284233 ENSG00000265787 OTTHUMG00000178670 uc002ktb.3 NR_026756 PGOHUM00000235016 +HGNC:42407 CYP4F36P cytochrome P450 family 4 subfamily F member 36, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 CYP4F2-de12b cytochrome P450, family 4, subfamily F, polypeptide 36, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 100422235 ENSG00000273330 OTTHUMG00000182289 NG_024156 PGOHUM00000294897 +HGNC:39957 CYP4F44P cytochrome P450 family 4 subfamily F member 44, pseudogene pseudogene pseudogene Approved 8p11.1 08p11.1 CYP4F-se12[6:8] cytochrome P450, family 4, subfamily F, polypeptide 44, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 106480733 ENSG00000253748 OTTHUMG00000164117 NG_043667 PGOHUM00000249642 +HGNC:39950 CYP4F45P cytochrome P450 family 4 subfamily F member 45, pseudogene pseudogene pseudogene Approved 9p12 09p12 CYP4F-se13[6:8] cytochrome P450, family 4, subfamily F, polypeptide 45, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 PGOHUM00000236504 +HGNC:39947 CYP4F59P cytochrome P450 family 4 subfamily F member 59, pseudogene pseudogene pseudogene Approved 9q21.11 09q21.11 CYP4F-se14[6:8] cytochrome P450, family 4, subfamily F, polypeptide 59, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 100132340 NG_031982 PGOHUM00000303907 +HGNC:42468 CYP4F60P cytochrome P450 family 4 subfamily F member 60, pseudogene pseudogene pseudogene Approved 9p11.1 09p11.1 CYP4F-se15[6:7:8] cytochrome P450, family 4, subfamily F, polypeptide 60, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2016-10-05 107126294 ENSG00000230635 OTTHUMG00000188575 NG_046628 PGOHUM00000236093 +HGNC:42469 CYP4F61P cytochrome P450 family 4 subfamily F member 61, pseudogene pseudogene pseudogene Approved 9q13 09q13 CYP4F-se16[6:7:8] cytochrome P450, family 4, subfamily F, polypeptide 61, pseudogene Cytochrome P450 family 4 1003 2011-07-29 2015-12-09 2015-12-09 107457588 NG_046836 PGOHUM00000236157 +HGNC:39956 CYP4F62P cytochrome P450 family 4 subfamily F member 62, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 CYP4F-se11[6:7:8] CYP4F43P "cytochrome P450, family 4, subfamily F, polypeptide 43, pseudogene|cytochrome P450, family 4, subfamily F, polypeptide 62, pseudogene" Cytochrome P450 family 4 1003 2011-07-29 2013-11-15 2015-12-09 2015-12-09 646802 ENSG00000239402 OTTHUMG00000153934 NR_103761 PGOHUM00000240301 +HGNC:23198 CYP4V2 cytochrome P450 family 4 subfamily V member 2 protein-coding gene gene with protein product Approved 4q35.1-q35.2 04q35.1-q35.2 CYP4AH1 cytochrome P450, family 4, subfamily V, polypeptide 2 Cytochrome P450 family 4 1003 2004-07-05 2015-12-09 2016-10-11 285440 ENSG00000145476 OTTHUMG00000160379 uc003iyw.5 AK022114 NM_207352 CCDS34119 Q6ZWL3 15042513 MGI:2142763 RGD:708530 CYP4V2 608614 121002 objectId:1350 +HGNC:20244 CYP4X1 cytochrome P450 family 4 subfamily X member 1 protein-coding gene gene with protein product Approved 1p33 01p33 MGC40051 cytochrome P450, family 4, subfamily X, polypeptide 1 Cytochrome P450 family 4 1003 2004-05-07 2015-12-09 2015-12-09 260293 ENSG00000186377 OTTHUMG00000008017 uc001cqt.3 AK091806 NM_178033 CCDS544 Q8N118 12176035 MGI:1932403 RGD:628719 CYP4X1 614999 objectId:1351 +HGNC:20583 CYP4Z1 cytochrome P450 family 4 subfamily Z member 1 protein-coding gene gene with protein product Approved 1p33 01p33 CYP4A20 cytochrome P450, family 4, subfamily Z, polypeptide 1 Cytochrome P450 family 4 1003 2004-05-10 2015-12-09 2015-12-09 199974 ENSG00000186160 OTTHUMG00000008019 uc001cqu.2 AY262056 NM_178134 CCDS545 Q86W10 15059886 CYP4Z1 objectId:1352 +HGNC:24426 CYP4Z2P cytochrome P450 family 4 subfamily Z member 2, pseudogene pseudogene pseudogene Approved 1p33 01p33 FLJ40054 cytochrome P450, family 4, subfamily Z, polypeptide 2, pseudogene Cytochrome P450 family 4 1003 2008-04-16 2015-12-09 2015-12-09 163720 ENSG00000154198 OTTHUMG00000008024 AY262057 NR_002788 Q8N1L4 15059886 PGOHUM00000244006 +HGNC:2651 CYP7A1 cytochrome P450 family 7 subfamily A member 1 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 cholesterol 7 alpha-monooxygenase CYP7 "cytochrome P450, subfamily VIIA (cholesterol 7 alpha-monooxygenase), polypeptide 1|cytochrome P450, family 7, subfamily A, polypeptide 1" Cytochrome P450 family 7 1005 1992-04-16 2015-12-09 2016-10-05 1581 ENSG00000167910 OTTHUMG00000164301 uc003xtm.5 M89803 NM_000780 CCDS6171 P22680 1358792 MGI:106091 RGD:2482 CYP7A1 118455 212882 objectId:1354 1.14.13.17 +HGNC:2652 CYP7B1 cytochrome P450 family 7 subfamily B member 1 protein-coding gene gene with protein product Approved 8q12.3 08q12.3 SPG5A "cytochrome P450, subfamily VIIB (oxysterol 7 alpha-hydroxylase), polypeptide 1|spastic paraplegia 5A (autosomal recessive)|cytochrome P450, family 7, subfamily B, polypeptide 1" Cytochrome P450 family 7 1005 1999-06-02 2015-12-09 2016-10-05 9420 ENSG00000172817 OTTHUMG00000164387 uc003xvj.3 AF029403 NM_004820 CCDS6180 O75881 "9802883|18252231" MGI:104978 RGD:2483 CYP7B1 603711 121005 objectId:1355 +HGNC:2653 CYP8B1 cytochrome P450 family 8 subfamily B member 1 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 CYP12 "cytochrome P450, subfamily VIIIB (sterol 12-alpha-hydroxylase), polypeptide 1|cytochrome P450, family 8, subfamily B, polypeptide 1" Cytochrome P450 family 8 1006 1998-06-25 2015-12-09 2015-12-09 1582 ENSG00000180432 OTTHUMG00000133047 uc003cmh.4 AF090318 NM_004391 CCDS2707 Q9UNU6 10051404 MGI:1338044 RGD:71016 CYP8B1 602172 objectId:1357 +HGNC:2590 CYP11A1 cytochrome P450 family 11 subfamily A member 1 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 P450SCC cholesterol monooxygenase (side-chain-cleaving) CYP11A "cytochrome P450, subfamily XIA (cholesterol side chain cleavage)|cytochrome P450, family 11, subfamily A, polypeptide 1" Cytochrome P450 family 11 1007 1986-01-01 2003-01-17 2015-12-09 2016-10-05 1583 ENSG00000140459 OTTHUMG00000150716 uc002axt.3 AK056794 NM_000781 "CCDS32291|CCDS45303" P05108 MGI:88582 RGD:69325 CYP11A1 118485 120945 objectId:1358 1.14.15.6 +HGNC:2591 CYP11B1 cytochrome P450 family 11 subfamily B member 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "P450C11|FHI|CPN1" steroid 11-beta-monooxygenase CYP11B "cytochrome P450, subfamily XIB (steroid 11-beta-hydroxylase), polypeptide 1|cytochrome P450, family 11, subfamily B, polypeptide 1" Cytochrome P450 family 11 1007 1986-01-01 2015-12-09 2016-10-05 1584 ENSG00000160882 OTTHUMG00000164637 uc003yxi.4 D16153 XM_011516874 "CCDS6392|CCDS34953" P15538 1303253 "MGI:88583|MGI:88584" CYP11B1 610613 120949 objectId:1359 1.14.15.4 +HGNC:2592 CYP11B2 cytochrome P450 family 11 subfamily B member 2 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "CYP11BL|CPN2|P-450C18|P450aldo|ALDOS" steroid 11-beta-monooxygenase CYP11B "cytochrome P450, subfamily XIB (steroid 11-beta-hydroxylase), polypeptide 2|cytochrome P450, family 11, subfamily B, polypeptide 2" Cytochrome P450 family 11 1007 1986-01-01 2015-12-09 2016-10-05 1585 ENSG00000179142 OTTHUMG00000160254 uc003yxk.1 X54741 NM_000498 CCDS6393 P19099 1303253 "MGI:88583|MGI:88584" RGD:727886 CYP11B2 124080 120955 objectId:1360 1.14.15.4 +HGNC:2593 CYP17A1 cytochrome P450 family 17 subfamily A member 1 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "P450C17|CPT7|S17AH" Steroid 17-alpha-monooxygenase CYP17 "cytochrome P450, subfamily XVII (steroid 17-alpha-hydroxylase), adrenal hyperplasia|cytochrome P450, family 17, subfamily A, polypeptide 1" Cytochrome P450 family 17 1008 1986-01-01 2003-02-28 2015-12-09 2016-10-05 1586 ENSG00000148795 OTTHUMG00000018969 uc001kwg.3 M19489 NM_000102 CCDS7541 P05093 "1347802|9888582" MGI:88586 RGD:2456 CYP17A1 609300 120963 objectId:1361 "1.14.99.9|4.1.2.30" +HGNC:31671 CYP17A1-AS1 CYP17A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q24.32 10q24.32 bA753C18.3 CYP17A1OS "cytochrome P450, family 17, subfamily A, polypeptide 1 opposite strand|CYP17A1 antisense RNA 1 (non-protein coding)" 2004-05-27 2011-09-02 2012-08-15 2015-07-09 102724307 ENSG00000203886 OTTHUMG00000018970 uc057vrq.1 XR_428804 +HGNC:2594 CYP19A1 cytochrome P450 family 19 subfamily A member 1 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "ARO|P-450AROM|CPV1|ARO1|CYAR|aromatase" CYP19 "cytochrome P450, subfamily XIX (aromatization of androgens)|cytochrome P450, family 19, subfamily A, polypeptide 1" Cytochrome P450 family 19 1009 1986-01-01 2003-02-28 2015-12-09 2016-10-05 1588 ENSG00000137869 OTTHUMG00000131747 uc001zza.5 D14473 NM_031226 CCDS10139 P11511 8477708 MGI:88587 RGD:2457 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ CYP19A1 107910 120969 objectId:1362 +HGNC:20576 CYP20A1 cytochrome P450 family 20 subfamily A member 1 protein-coding gene gene with protein product Approved 2q33.2 02q33.2 CYP-M cytochrome P450, family 20, subfamily A, polypeptide 1 Cytochrome P450 family 20 1010 2003-03-20 2015-12-09 2016-10-05 57404 ENSG00000119004 OTTHUMG00000132854 uc002uzv.5 AK021770 NM_020674 CCDS2357 Q6UW02 MGI:1925201 RGD:735221 CYP20A1 objectId:1363 +HGNC:2599 CYP21A1P cytochrome P450 family 21 subfamily A member 1, pseudogene pseudogene pseudogene Approved 6p21.33 06p21.33 P450c21A "CYP21P|CYP21A" "cytochrome P450, subfamily XXIA (steroid 21-hydroxylase), polypeptide 1 pseudogene|cytochrome P450, family 21, subfamily A, polypeptide 1 pseudogene" Cytochrome P450 family 21 1011 1986-01-01 2015-12-09 2015-12-09 1590 ENSG00000204338 OTTHUMG00000031026 M13935 NR_040090 "3487786|3038528" MGI:88591 RGD:2461 PGOHUM00000250207 +HGNC:2600 CYP21A2 cytochrome P450 family 21 subfamily A member 2 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "P450c21B|CA21H|CPS1|CAH1" Steroid 21-monooxygenase "CYP21|CYP21B" "cytochrome P450, subfamily XXIA (steroid 21-hydroxylase, congenital adrenal hyperplasia), polypeptide 2|cytochrome P450, family 21, subfamily A, polypeptide 2" Cytochrome P450 family 21 1011 1986-01-01 2015-12-09 2016-10-12 1589 ENSG00000231852 OTTHUMG00000031069 uc021zxa.2 X58906 NM_000500 "CCDS4735|CCDS47406" P08686 MGI:88591 "Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/|LRG_829|http://www.lrg-sequence.org/LRG/LRG_829" CYP21A2 613815 120981 objectId:1364 1.14.99.10 +HGNC:2602 CYP24A1 cytochrome P450 family 24 subfamily A member 1 protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "CP24|P450-CC24" CYP24 "cytochrome P450, subfamily XXIV (vitamin D 24-hydroxylase)|cytochrome P450, family 24, subfamily A, polypeptide 1" Cytochrome P450 family 24 1012 1992-09-09 2003-02-28 2015-12-09 2015-12-09 1591 ENSG00000019186 OTTHUMG00000032773 uc002xwv.3 U60669 XM_005260304 "CCDS33491|CCDS46616" Q07973 MGI:88593 RGD:2462 CYP24A1 126065 279838 objectId:1365 +HGNC:2603 CYP26A1 cytochrome P450 family 26 subfamily A member 1 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "P450RAI|CP26|CYP26|P450RAI1" "cytochrome P450, subfamily XXVIA, polypeptide 1|cytochrome P450, family 26, subfamily A, polypeptide 1" Cytochrome P450 family 26 1013 1996-12-12 2015-12-09 2016-10-05 1592 ENSG00000095596 OTTHUMG00000018765 uc001kil.3 AF005418 NM_000783 "CCDS7426|CCDS7427" O43174 "9228017|9521883" MGI:1096359 RGD:620161 CYP26A1 602239 objectId:1366 +HGNC:20581 CYP26B1 cytochrome P450 family 26 subfamily B member 1 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 P450RAI-2 "cytochrome P450, family 26, subfamily B, polypeptide 1|cytochrome P450 family 26 subfamily A member 1" Cytochrome P450 family 26 1013 2004-01-26 2015-12-09 2016-10-05 56603 ENSG00000003137 OTTHUMG00000129756 uc002sih.3 NM_019885 "CCDS1919|CCDS62934" Q9NR63 10545224 MGI:2176159 RGD:631379 CYP26B1 605207 299166 objectId:1367 +HGNC:20577 CYP26C1 cytochrome P450 family 26 subfamily C member 1 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 cytochrome P450, family 26, subfamily C, polypeptide 1 Cytochrome P450 family 26 1013 2003-11-18 2015-12-09 2015-12-09 340665 ENSG00000187553 OTTHUMG00000018766 uc010qns.2 NM_183374 CCDS7425 Q6V0L0 MGI:2679699 RGD:1308843 CYP26C1 608428 320192 objectId:1368 +HGNC:2605 CYP27A1 cytochrome P450 family 27 subfamily A member 1 protein-coding gene gene with protein product Approved 2q35 02q35 "CTX|CP27" cerebrotendinous xanthomatosis CYP27 "cytochrome P450, subfamily XXVIIA (steroid 27-hydroxylase, cerebrotendinous xanthomatosis), polypeptide 1|cytochrome P450, family 27, subfamily A, polypeptide 1" Cytochrome P450 family 27 1014 1991-08-22 2015-12-09 2015-12-09 1593 ENSG00000135929 OTTHUMG00000048238 uc002viz.5 BC017044 XM_017003488 CCDS2423 Q02318 2019602 MGI:88594 RGD:727915 Cerebrotendinous Xanthomatosis|http://grenada.lumc.nl/LOVD2/ctx/home.php?select_db=CYP27A1 CYP27A1 606530 120989 objectId:1369 +HGNC:2606 CYP27B1 cytochrome P450 family 27 subfamily B member 1 protein-coding gene gene with protein product Approved 12q14.1 12q14.1 "CYP1|P450c1" "VDDR I|1alpha(OH)ase|25-Hydroxyvitamin D3 1alpha-hydroxylase" "VDD1|PDDR" "cytochrome P450, subfamily XXVIIB (25-hydroxyvitamin D-1-alpha-hydroxylase), polypeptide 1|cytochrome P450, family 27, subfamily B, polypeptide 1" Cytochrome P450 family 27 1014 1998-03-24 2015-12-09 2015-12-09 1594 ENSG00000111012 OTTHUMG00000170457 uc001spz.2 AB006987 NM_000785 CCDS8954 O15528 "9295274|9344864" MGI:1098274 RGD:69192 CYP27B1 609506 120994 objectId:1370 +HGNC:33480 CYP27C1 cytochrome P450 family 27 subfamily C member 1 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 FLJ16008 cytochrome P450, family 27, subfamily C, polypeptide 1 Cytochrome P450 family 27 1014 2007-05-15 2015-12-09 2015-12-09 339761 ENSG00000186684 OTTHUMG00000153400 uc021vnn.2 AC027142 NM_001001665 CCDS33285 Q4G0S4 CYP27C1 objectId:1371 +HGNC:17449 CYP39A1 cytochrome P450 family 39 subfamily A member 1 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "cytochrome P450, subfamily XXXIX (oxysterol 7 alpha-hydroxylase), polypeptide 1|cytochrome P450, family 39, subfamily A, polypeptide 1" Cytochrome P450 family 39 1015 2002-05-29 2015-12-09 2015-12-09 51302 ENSG00000146233 OTTHUMG00000014785 uc003oyf.3 AF237982 XM_017010921 "CCDS4916|CCDS75465" Q9NYL5 10748047 MGI:1927096 RGD:1307471 CYP39A1 605994 objectId:1372 +HGNC:2641 CYP46A1 cytochrome P450 family 46 subfamily A member 1 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 CYP46 "cytochrome P450, subfamily 46 (cholesterol 24-hydroxylase)|cytochrome P450, family 46, subfamily A, polypeptide 1" Cytochrome P450 family 46 1016 1999-08-20 2003-02-28 2015-12-09 2015-12-09 10858 ENSG00000036530 OTTHUMG00000171510 uc001ygo.4 AF094480 XM_017020933 CCDS9954 Q9Y6A2 10377398 MGI:1341877 RGD:1306605 CYP46A1 604087 objectId:1373 +HGNC:42349 CYP46A4P cytochrome P450 family 46 subfamily A member 4, pseudogene pseudogene pseudogene Approved 1p33 01p33 CYP46A-se1[12:13:14] cytochrome P450, family 46, subfamily A, polypeptide 4, pseudogene Cytochrome P450 family 46 1016 2011-07-29 2015-12-09 2015-12-09 100874494 ENSG00000237180 OTTHUMG00000007962 NG_032510 PGOHUM00000261896 +HGNC:2649 CYP51A1 cytochrome P450 family 51 subfamily A member 1 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 "CP51|CYPL1|P450L1|LDM|P450-14DM" CYP51 "cytochrome P450, 51 (lanosterol 14-alpha-demethylase)|cytochrome P450, family 51, subfamily A, polypeptide 1" Cytochrome P450 family 51 1017 1996-10-26 2003-02-28 2015-12-09 2015-12-09 1595 ENSG00000001630 OTTHUMG00000131131 uc003ulm.5 U51685 NM_000786 "CCDS5623|CCDS55123" Q16850 8975714 MGI:106040 RGD:2481 CYP51A1 601637 objectId:1374 +HGNC:50694 CYP51A1-AS1 CYP51A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q21.2 07q21.2 "ENST00000453068|LRRD1-AS1" CYP51A1 antisense RNA 1 (head to head) 2014-06-04 2014-11-19 2014-11-19 613126 ENSG00000188693 OTTHUMG00000156056 BC042829 NR_122109 24905231 +HGNC:20245 CYP51A1P1 cytochrome P450 family 51 subfamily A member 1 pseudogene 1 pseudogene pseudogene Approved 3p12.2 03p12.2 CYP51P1 "cytochrome P450, family 51, pseudogene 1|cytochrome P450, family 51, subfamily A, polypeptide 1 pseudogene 1" Cytochrome P450 family 51 1017 2008-12-09 2013-11-15 2015-12-09 2015-12-09 83528 ENSG00000241095 OTTHUMG00000158947 U36926 NG_001294 8809088 PGOHUM00000237670 +HGNC:20251 CYP51A1P2 cytochrome P450 family 51 subfamily A member 1 pseudogene 2 pseudogene pseudogene Approved 13q12.3 13q12.3 CYP51P2 "cytochrome P450, family 51, pseudogene 2|cytochrome P450, family 51, subfamily A, polypeptide 1 pseudogene 2" Cytochrome P450 family 51 1017 2008-12-09 2013-11-15 2015-12-09 2015-12-09 83530 ENSG00000233588 OTTHUMG00000016651 U40053 NG_002766 8809088 PGOHUM00000248345 +HGNC:41991 CYP51A1P3 cytochrome P450 family 51 subfamily A member 1 pseudogene 3 pseudogene pseudogene Approved 6q24.3 06q24.3 CYP51P3 "cytochrome P450, family 51, pseudogene 3|cytochrome P450, family 51, subfamily A, polypeptide 1 pseudogene 3" Cytochrome P450 family 51 1017 2011-07-29 2013-11-15 2015-12-09 2015-12-09 100422264 ENSG00000215223 OTTHUMG00000015774 NG_025983 PGOHUM00000243811 +HGNC:2654 CYR61 cysteine rich angiogenic inducer 61 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "GIG1|CCN1" IGFBP10 cysteine-rich, angiogenic inducer, 61 CYR61/CTGF/NOV matricellular proteins 1046 1998-03-02 2016-01-12 2016-01-12 3491 ENSG00000142871 OTTHUMG00000010577 uc001dle.4 AF031385 NM_001554 CCDS706 O00622 9135077 MGI:88613 RGD:620763 CYR61 602369 +HGNC:18525 CYS1 cystin 1 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 2002-04-26 2014-11-19 192668 ENSG00000205795 OTTHUMG00000151703 uc002rag.3 "AF544983|AA446394" NM_001037160 CCDS33145 Q717R9 "12733055|11854326" MGI:2177632 RGD:1596023 CYS1 +HGNC:17451 CYSLTR1 cysteinyl leukotriene receptor 1 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "CysLT1|CysLT(1)|CYSLT1R" Leukotriene receptors 204 2002-08-29 2016-10-05 10800 ENSG00000173198 OTTHUMG00000021889 uc010nmb.5 AF119711 NM_006639 CCDS14439 Q9Y271 "10391245|10462554" MGI:1926218 RGD:619796 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CYSLTR1 CYSLTR1 300201 objectId:269 +HGNC:18274 CYSLTR2 cysteinyl leukotriene receptor 2 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "CysLT(2)|CYSLT2R" Leukotriene receptors 204 2002-08-29 2014-11-19 57105 ENSG00000152207 OTTHUMG00000016906 uc010ada.2 AB038269 NM_001308476 CCDS9412 Q9NS75 "10913337|1085123" MGI:1917336 RGD:619797 CYSLTR2 605666 objectId:270 +HGNC:30529 CYSRT1 cysteine rich tail 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 MGC59937 Similar to RIKEN cDNA 2310002J15 gene C9orf169 chromosome 9 open reading frame 169 2008-07-03 2014-05-30 2016-01-28 2016-04-25 375791 ENSG00000197191 OTTHUMG00000153383 NM_199001 CCDS48064 A8MQ03 12477932 MGI:1915109 RGD:1560880 +HGNC:30239 CYSTM1 cysteine rich transmembrane module containing 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 ORF1-FL49 C5orf32 chromosome 5 open reading frame 32 2006-08-24 2012-02-23 2016-01-28 2016-01-28 84418 ENSG00000120306 OTTHUMG00000129243 uc003lfd.4 AJ245877 NM_032412 CCDS4221 Q9H1C7 19933165 MGI:1913310 RGD:2323233 +HGNC:9501 CYTH1 cytohesin 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "B2-1|D17S811E|cytohesin-1" PSCD1 pleckstrin homology, Sec7 and coiled-coil domains 1 Pleckstrin homology domain containing 682 1998-11-19 2008-08-14 2008-08-14 2016-10-05 9267 ENSG00000108669 OTTHUMG00000150253 uc002jvw.4 M85169 NM_004762 "CCDS32754|CCDS42392" Q15438 "1511013|8449036|21628335|20018626" MGI:1334257 RGD:620397 CYTH1 182115 +HGNC:9502 CYTH2 cytohesin 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "CTS18.1|Sec7p-L|ARNO|Sec7p-like|cytohesin-2" "PSCD2L|PSCD2" "pleckstrin homology, Sec7 and coiled/coil domains 2 (cytohesin-2)|pleckstrin homology, Sec7 and coiled-coil domains 2" Pleckstrin homology domain containing 682 1998-11-19 2008-08-14 2008-08-14 2016-10-05 9266 ENSG00000105443 OTTHUMG00000150245 uc002pjj.5 X99753 NM_004228 CCDS12722 Q99418 "8706128|8945478|20525696" MGI:1334255 RGD:620398 CYTH2 602488 +HGNC:9504 CYTH3 cytohesin 3 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "GRP1|ARNO3|cytohesin-3" PSCD3 pleckstrin homology, Sec7 and coiled-coil domains 3 Pleckstrin homology domain containing 682 1998-11-19 2008-08-14 2008-08-14 2015-09-11 9265 ENSG00000008256 OTTHUMG00000023440 uc003spt.4 AJ223957 NM_004227 CCDS5346 O43739 9072969 MGI:1335107 RGD:620399 CYTH3 605081 +HGNC:9505 CYTH4 cytohesin 4 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "CYT4|cytohesin-4" PSCD4 "pleckstrin homology, Sec7 and coiled/coil domains 4|pleckstrin homology, Sec7 and coiled-coil domains 4" Pleckstrin homology domain containing 682 2000-01-11 2008-08-14 2008-08-14 2016-10-05 27128 ENSG00000100055 OTTHUMG00000150562 uc003arf.4 AF075458 XM_011530147 CCDS13946 Q9UIA0 10591208 MGI:2441702 RGD:1564842 CYTH4 606514 +HGNC:9506 CYTIP cytohesin 1 interacting protein protein-coding gene gene with protein product Approved 2q24.1 02q24.1 "B3-1|HE|CYBR|CASP|CYTHIP" "cytohesin binding protein HE|cytohesin binder and regulator" PSCDBP pleckstrin homology, Sec7 and coiled-coil domains, binding protein PDZ domain containing 1220 1999-07-19 2008-08-19 2008-08-14 2016-10-05 9595 ENSG00000115165 OTTHUMG00000154551 uc002tzj.2 L06633 NM_004288 CCDS2204 O60759 "18926288|10343115|11867758|20530790|21562043" MGI:2183535 RGD:1307990 CYTIP 604448 +HGNC:24435 CYTL1 cytokine like 1 protein-coding gene gene with protein product Approved 4p16.2 04p16.2 "C17|C4orf4" cytokine-like 1 2005-02-01 2015-11-09 2016-10-05 54360 ENSG00000170891 OTTHUMG00000125479 uc003gig.5 AF193766 NM_018659 CCDS3379 Q9NRR1 10857752 MGI:2684993 RGD:1561846 CYTL1 607930 +HGNC:28717 CYTOR cytoskeleton regulator RNA non-coding RNA RNA, long non-coding Approved 2p11.2 02p11.2 MGC4677 "C2orf59|NCRNA00152|LINC00152" "chromosome 2 open reading frame 59|non-protein coding RNA 152|long intergenic non-protein coding RNA 152" Long non-coding RNAs 788 2007-06-14 2016-09-19 2016-09-19 2016-09-19 112597 ENSG00000222041 OTTHUMG00000130273 uc061loh.1 BC009508 XR_042051 "27617288|24523021|24036268|26237576" +HGNC:16274 CYYR1 cysteine and tyrosine rich 1 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 C21orf95 cysteine/tyrosine-rich 1 2001-07-23 2016-04-21 2016-10-05 116159 ENSG00000166265 OTTHUMG00000078689 uc002ymd.4 AY061853 NM_052954 CCDS13578 Q96J86 "12036297|12062809|24981926" MGI:2152187 RGD:1359578 CYYR1 616020 +HGNC:39560 CYYR1-AS1 cysteine and tyrosine rich 1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 cysteine/tyrosine-rich 1 antisense RNA 1 Long non-coding RNAs 788 2014-07-01 2016-06-06 2016-06-06 100996571 ENSG00000197934 OTTHUMG00000078660 AK125338 NR_135516 24981926 616021 +HGNC:2659 CZP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:28358 D2HGDH D-2-hydroxyglutarate dehydrogenase protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "MGC25181|D2HGD|FLJ42195" 2006-03-09 2016-10-05 728294 ENSG00000180902 OTTHUMG00000151474 uc002wce.3 AK091725 NM_152783 "CCDS33426|CCDS74684" Q8N465 "15070399|15609246" MGI:2138209 RGD:1307976 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/vumc/home.php?select_db=D2HGDH D2HGDH 609186 121007 1.1.99.- +HGNC:18142 DAAM1 dishevelled associated activator of morphogenesis 1 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 KIAA0666 2002-02-06 2016-10-05 23002 ENSG00000100592 OTTHUMG00000140326 uc001xea.3 AB014566 NM_014992 "CCDS9737|CCDS58323" Q9Y4D1 "11779461|18162551" MGI:1914596 RGD:1305119 DAAM1 606626 +HGNC:18143 DAAM2 dishevelled associated activator of morphogenesis 2 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 KIAA0381 2002-02-06 2016-10-05 23500 ENSG00000146122 OTTHUMG00000014653 uc003oox.3 AB002379 XM_006715039 "CCDS54999|CCDS56426" Q86T65 "11779461|12632087" MGI:1923691 RGD:1306128 DAAM2 606627 +HGNC:2661 DAB1 DAB1, reelin adaptor protein protein-coding gene gene with protein product Approved 1p32.2 01p32.2 "disabled (Drosophila) homolog 1|disabled homolog 1 (Drosophila)|Dab reelin signal transducer 1|Dab, reelin signal transducer, homolog 1 (Drosophila)" 1998-06-12 2016-03-18 2016-03-18 1600 ENSG00000173406 OTTHUMG00000008391 uc057gxe.1 BC067445 NM_021080 CCDS607 O75553 "9790777|26441085" MGI:108554 RGD:628770 DAB1 603448 +HGNC:49443 DAB1-AS1 DAB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p32.2 01p32.2 2013-12-03 2013-12-03 101926890 ENSG00000226759 OTTHUMG00000008286 NR_104365 +HGNC:2662 DAB2 DAB2, clathrin adaptor protein protein-coding gene gene with protein product Approved 5p13.1 05p13.1 DOC-2 "disabled (Drosophila) homolog 2 (mitogen-responsive phosphoprotein)|disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila)|Dab, mitogen-responsive phosphoprotein, homolog 2 (Drosophila)" 1998-07-29 2016-03-18 2016-03-18 1601 ENSG00000153071 OTTHUMG00000162043 uc003jlx.4 U53446 NM_001343 "CCDS34149|CCDS58946" P98082 "8660969|9620555" MGI:109175 RGD:621007 DAB2 601236 +HGNC:17294 DAB2IP DAB2 interacting protein protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "AF9Q34|DIP1/2|KIAA1743|AIP1" "nGAP-like protein|DOC-2/DAB2 interactive protein|ASK-interacting protein|ASK1-interacting protein 1" C2 and RasGAP domain containing 830 2002-01-23 2016-10-05 153090 ENSG00000136848 OTTHUMG00000020595 uc004bln.5 AF367051 NM_032552 "CCDS6832|CCDS6833" Q5VWQ8 "11944990|11812785" MGI:1916851 RGD:621686 DAB2IP 609205 +HGNC:2663 DACH1 dachshund family transcription factor 1 protein-coding gene gene with protein product Approved 13q21.33 13q21.33 DACH "dachshund homolog (Drosophila)|dachshund homolog 1 (Drosophila)" 1998-04-06 2004-04-02 2014-02-03 2015-08-24 1602 ENSG00000276644 OTTHUMG00000017063 uc058xki.1 AJ005670 NM_004392 CCDS41899 Q9UI36 "9933575|10395809|15057823" MGI:1277991 RGD:1592073 DACH1 603803 +HGNC:16814 DACH2 dachshund family transcription factor 2 protein-coding gene gene with protein product Approved Xq21.2 Xq21.2 dachshund homolog 2 (Drosophila) 2001-11-08 2014-02-03 2016-10-05 117154 ENSG00000126733 OTTHUMG00000021944 uc004eew.3 AF428101 NM_053281 "CCDS14455|CCDS48140|CCDS55457" Q96NX9 MGI:1890446 RGD:1561687 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DACH2 DACH2 300608 +HGNC:51902 DACOR1 DNMT1-associated colon cancer repressed lncRNA 1 non-coding RNA RNA, long non-coding Approved 15q22.33 15q22.33 TCONS_00023265 Long non-coding RNAs 788 2015-09-18 2015-09-18 100131796 26307088 +HGNC:17748 DACT1 dishevelled binding antagonist of beta catenin 1 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "DAPPER1|THYEX3|HDPR1|DAPPER|FRODO" "dapper homolog 1, antagonist of beta-catenin (xenopus)|dapper, antagonist of beta-catenin, homolog 1 (Xenopus laevis)" 2003-01-15 2016-05-03 2016-10-05 51339 ENSG00000165617 OTTHUMG00000140324 uc001xdw.4 AF251079 NM_016651 "CCDS9736|CCDS41961" Q9NYF0 11970895 MGI:1891740 RGD:1564008 DACT1 607861 315395 +HGNC:21231 DACT2 dishevelled binding antagonist of beta catenin 2 protein-coding gene gene with protein product Approved 6q27 06q27 "bA503C24.7|DAPPER2" C6orf116 "chromosome 6 open reading frame 116|dapper homolog 2, antagonist of beta-catenin (xenopus)|dapper, antagonist of beta-catenin, homolog 2 (Xenopus laevis)" 2003-05-29 2003-09-17 2016-05-03 2016-05-03 168002 ENSG00000164488 OTTHUMG00000016046 uc003qwq.5 AF318336 XM_011535507 "CCDS47519|CCDS69241|CCDS75554" Q5SW24 MGI:1920347 RGD:1310742 DACT2 608966 +HGNC:30745 DACT3 dishevelled binding antagonist of beta catenin 3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "MGC15476|DAPPER3" RRR1 "arginine rich region 1|dapper, antagonist of beta-catenin, homolog 3 (Xenopus laevis)" 2006-09-14 2006-09-25 2016-05-03 2016-05-03 147906 ENSG00000197380 OTTHUMG00000153070 uc010ekq.3 NM_145056 "CCDS12688|CCDS74402" Q96B18 16881060 MGI:3654828 RGD:1563892 DACT3 611112 +HGNC:44120 DACT3-AS1 DACT3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.32 19q13.32 DACT3 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100506068 ENSG00000245598 OTTHUMG00000165987 uc021uwh.2 BC043434 NR_040041 +HGNC:2664 DAD1 defender against cell death 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 OST2 "oligosaccharyltransferase 2 homolog (S. cerevisiae)|oligosaccharyltransferase subunit 2 (non-catalytic)" Oligosaccharyltransferase complex subunits 445 1994-11-14 2014-11-19 1603 ENSG00000129562 OTTHUMG00000028685 uc001wgl.3 AK223129 NM_001344 CCDS9571 P61803 MGI:101912 RGD:621028 DAD1 600243 +HGNC:18295 DAD1P1 defender against cell death 1 pseudogene 1 pseudogene pseudogene Approved 12p12.1 12p12.1 DAD-R DAD1L defender against cell death 1-like 2007-07-26 2010-10-15 2010-10-15 2010-10-15 56286 NR_024064 "10812081|11912161" 609860 PGOHUM00000239371 +HGNC:2666 DAG1 dystroglycan 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "A3a|156DAG|AGRNR|DAG" "alpha-dystroglycan|dystrophin-associated glycoprotein-1|beta-dystroglycan" dystroglycan 1 (dystrophin-associated glycoprotein 1) 1997-07-22 2015-11-19 2016-10-12 1605 ENSG00000173402 OTTHUMG00000156869 uc021wxz.1 L19711 NM_001177643 CCDS2799 Q14118 "7774920|1741056" MGI:101864 RGD:621890 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=DAG1|LRG_854|http://www.lrg-sequence.org/LRG/LRG_854" DAG1 128239 280347 S72.001 +HGNC:1165 DAGLA diacylglycerol lipase alpha protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "KIAA0659|NSDDR|DAGLALPHA" neural stem cell-derived dendrite regulator C11orf11 "chromosome 11 open reading frame 11|diacylglycerol lipase, alpha" Lipases 464 1998-07-30 2007-02-28 2016-02-12 2016-10-05 747 ENSG00000134780 OTTHUMG00000168160 uc001nsa.4 AB014559 NM_006133 CCDS31578 Q9Y4D2 9734811 MGI:2677061 RGD:1359461 DAGLA 614015 objectId:1396 3.1.1.- +HGNC:28923 DAGLB diacylglycerol lipase beta protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "KCCR13L|DAGLBETA" diacylglycerol lipase, beta Lipases 464 2007-02-28 2016-02-12 2016-02-12 221955 ENSG00000164535 OTTHUMG00000125513 uc003sqa.4 AF450090 NM_139179 "CCDS5350|CCDS47536" Q8NCG7 MGI:2442032 RGD:1310193 DAGLB 614016 objectId:1397 3.1.1.- +HGNC:51429 DALIR DNMT1-associated long intergenic non-coding RNA non-coding RNA RNA, long non-coding Approved 2q12 02q12 DALI DNMT1-Associated Long Intergenic Long non-coding RNAs 788 2014-12-10 2015-01-09 104940698 "BE439524|DA337013|EB386236" 25415054 MGI:5579231 +HGNC:25536 DALRD3 DALR anticodon binding domain containing 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ10496 2005-01-10 2014-11-19 55152 ENSG00000178149 OTTHUMG00000156748 uc003cvm.4 BC014099 NM_018114 "CCDS2783|CCDS33754|CCDS63632" Q5D0E6 12477932 MGI:1915039 RGD:1359206 DALRD3 +HGNC:28964 DANCR differentiation antagonizing non-protein coding RNA non-coding RNA RNA, long non-coding Approved 4q12 04q12 "ANCR|AGU2|lncRNA-ANCR" "anti-differentiation ncRNA|adipogenesis up-regulated transcript 2|anti-differentiation noncoding RNA" "KIAA0114|SNHG13" "KIAA0114|small nucleolar RNA host gene 13 (non-protein coding)" Long non-coding RNAs 788 2006-08-04 2012-02-09 2012-02-09 2015-01-23 57291 ENSG00000226950 OTTHUMG00000154670 uc062woz.1 BC015222 NR_024031 P0C864 "7788527|22302877|19531736" MGI:1917286 RGD:6489076 614625 +HGNC:26780 DAND5 DAN domain BMP antagonist family member 5 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "FLJ38607|CKTSF1B3|DANTE|GREM3|CER2|DTE|Coco" DAN domain family member 5, BMP antagonist DAN family 1246 2005-01-04 2016-04-27 2016-10-05 199699 ENSG00000179284 OTTHUMG00000180725 uc002mwc.2 AK095926 NM_152654 CCDS12291 Q8N907 15254711 MGI:1344365 RGD:1590249 DAND5 609068 +HGNC:50863 DANT1 DXZ4 associated non-coding transcript 1, proximal non-coding RNA RNA, long non-coding Approved Xq23 Xq23 Long non-coding RNAs 788 2015-07-29 2015-07-29 106029310 ENSG00000229335 OTTHUMG00000033102 CD173052 26188586 +HGNC:50862 DANT2 DXZ4 associated non-coding transcript 2, distal non-coding RNA RNA, long non-coding Approved Xq23 Xq23 Long non-coding RNAs 788 2015-07-29 2015-07-29 642776 ENSG00000235244 OTTHUMG00000022240 NR_132337 26188586 +HGNC:2671 DAO D-amino acid oxidase protein-coding gene gene with protein product Approved 12q24.11 12q24.11 DAMOX 1992-11-25 2016-07-04 2016-07-04 1610 ENSG00000110887 OTTHUMG00000169360 uc001tnr.5 D11370 XM_011538005 CCDS9122 P14920 "1356107|8182053" MGI:94859 RGD:621138 DAO 124050 231605 1.4.3.3 +HGNC:21191 DAOA D-amino acid oxidase activator protein-coding gene gene with protein product Approved 13q33.2 13q33.2 G72 G72 transcript 2003-12-09 2014-11-19 267012 ENSG00000182346 OTTHUMG00000041333 uc001vqb.5 AY138547 NM_172370 "CCDS41905|CCDS53880|CCDS59242" P59103 "12364586|15057823" DAOA 607408 +HGNC:30243 DAOA-AS1 DAOA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q33.2 13q33.2 G30 G30 transcript "DAOAAS|DAOA-AS" "DAOA antisense RNA (non-protein coding)|DAOA antisense RNA 1 (non-protein coding)" 2010-08-05 2010-11-25 2012-08-15 2014-11-19 282706 ENSG00000232307 OTTHUMG00000041332 uc021rmh.3 AY138548 NR_040247 "12364586|12647258" 607415 +HGNC:2672 DAP death associated protein protein-coding gene gene with protein product Approved 5p15.2 05p15.2 1995-04-27 2016-07-04 2016-07-04 1611 ENSG00000112977 OTTHUMG00000131041 uc003jez.5 X76105 NM_004394 "CCDS3880|CCDS77997" P51397 "8530096|7828849" MGI:1918190 RGD:620641 DAP 600954 +HGNC:2673 DAP3 death associated protein 3 protein-coding gene gene with protein product Approved 1q22 01q22 "MRPS29|DAP-3|MRP-S29|bMRP-10|MGC126058|MGC126059|DKFZp686G12159" mitochondrial 28S ribosomal protein S29 Mitochondrial ribosomal proteins 646 1999-05-14 2014-11-19 7818 ENSG00000132676 OTTHUMG00000035439 uc001flr.4 X83544 NM_004632 "CCDS1120|CCDS55646|CCDS55647" P51398 "7499268|9284927" MGI:1929538 RGD:1305339 DAP3 602074 +HGNC:17624 DAP3P1 death associated protein 3 pseudogene 1 pseudogene pseudogene Approved 1q22 01q22 MRPS29P1 mitochondrial ribosomal protein S29 pseudogene 1 DAP3P DAP3 pseudogene 2006-03-22 2010-09-24 2010-09-24 2014-11-19 359804 ENSG00000225082 OTTHUMG00000014013 NG_002904 16545939 PGOHUM00000245014 +HGNC:29762 DAP3P2 death associated protein 3 pseudogene 2 pseudogene pseudogene Approved 2q31.1 02q31.1 MRPS29P2 mitochondrial ribosomal protein S29 pseudogene 2 2010-09-29 2012-11-14 2012-11-14 2012-11-14 359774 ENSG00000228507 OTTHUMG00000154084 NG_002890 12706105 PGOHUM00000241015 +HGNC:2674 DAPK1 death associated protein kinase 1 protein-coding gene gene with protein product Approved 9q21.33 09q21.33 DAPK death-associated protein kinase 1 "Ankyrin repeat domain containing|Death associated protein kinases" "403|1021" 1995-04-27 2016-03-15 2016-10-05 1612 ENSG00000196730 OTTHUMG00000020150 uc033czy.2 X76104 NM_004938 CCDS43842 P53355 8530096 MGI:1916885 RGD:1311629 DAPK1 600831 objectId:2002 +HGNC:43591 DAPK1-IT1 DAPK1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 9q21.33 09q21.33 DAPK1 intronic transcript 1 (non-protein coding) 2011-11-16 2015-02-25 2015-02-25 100506897 ENSG00000236709 OTTHUMG00000020148 uc064ucn.1 BQ025444 22078386 +HGNC:2675 DAPK2 death associated protein kinase 2 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "DRP-1|MGC119312" Death associated protein kinases 1021 1999-10-19 2016-05-31 2016-10-05 23604 ENSG00000035664 OTTHUMG00000132947 uc002amr.4 AB018001 NM_014326 CCDS10188 Q9UIK4 10376525 MGI:1341297 RGD:1304708 DAPK2 616567 objectId:2003 +HGNC:2676 DAPK3 death associated protein kinase 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "ZIP|ZIPK" Death associated protein kinases 1021 1998-05-05 2016-05-31 2016-05-31 1613 ENSG00000167657 OTTHUMG00000181825 uc002lzd.2 AB007144 NM_001348 CCDS12116 O43293 9488481 MGI:1203520 RGD:621766 DAPK3 603289 objectId:2004 +HGNC:21490 DAPL1 death associated protein like 1 protein-coding gene gene with protein product Approved 2q24.1 02q24.1 death associated protein-like 1 2003-06-18 2015-11-12 2016-10-05 92196 ENSG00000163331 OTTHUMG00000153970 uc002uaf.4 NM_001017920 CCDS33307 A0PJW8 MGI:1923997 RGD:1309610 DAPL1 +HGNC:16500 DAPP1 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding gene gene with protein product Approved 4q23 04q23 BAM32 "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 2001-09-07 2016-05-27 2016-05-27 27071 ENSG00000070190 OTTHUMG00000160974 uc003hvf.5 AF186022 XM_011531840 "CCDS47112|CCDS77945" Q9UN19 10432293 MGI:1347063 RGD:1310189 DAPP1 605768 +HGNC:2678 DARS aspartyl-tRNA synthetase protein-coding gene gene with protein product Approved 2q21.3 02q21.3 aspartate tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class II 132 1998-04-22 2015-09-11 1615 ENSG00000115866 OTTHUMG00000131741 uc002tux.2 J05032 NM_001349 CCDS2180 P14868 2674137 MGI:2442544 RGD:621167 DARS 603084 364846 6.1.1.12 +HGNC:40170 DARS-AS1 DARS antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q21.3 02q21.3 2014-07-30 2014-11-19 101928243 ENSG00000231890 OTTHUMG00000153578 NR_110199 +HGNC:25538 DARS2 aspartyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 1q25.1 01q25.1 FLJ10514 aspartate tRNA ligase 2, mitochondrial Aminoacyl tRNA synthetases, Class II 132 2005-06-28 2007-02-23 2015-09-11 55157 ENSG00000117593 OTTHUMG00000034803 uc001gjh.3 AK022754 NM_018122 CCDS1311 Q6PI48 15779907 MGI:2442510 RGD:1308286 DARS2 610956 158065 6.1.1.12 +HGNC:26383 DAW1 dynein assembly factor with WD repeats 1 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 "FLJ25955|ODA16" outer row dynein assembly 16 homolog (Chlamydomonas) WDR69 WD repeat domain 69 WD repeat domain containing 362 2005-05-26 2013-02-19 2016-01-26 2016-01-26 164781 ENSG00000123977 OTTHUMG00000133190 uc002vpn.2 NM_178821 CCDS2470 Q8N136 "20568242|21953912" MGI:1923089 RGD:1561436 +HGNC:2681 DAXX death domain associated protein protein-coding gene gene with protein product Approved 6p21.32 06p21.32 DAP6 death-associated protein 6 1998-03-25 2016-07-04 2016-10-05 1616 ENSG00000204209 OTTHUMG00000031203 uc011drd.3 AF006041 NM_001141970 "CCDS4776|CCDS59008" Q9UER7 "9407001|9215629" MGI:1197015 RGD:621227 DAXX 603186 +HGNC:2682 DAZ1 deleted in azoospermia 1 protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 SPGY DAZ deleted in azoospermia RNA binding motif containing 725 1996-04-12 2005-01-22 2005-01-21 2015-08-27 1617 ENSG00000188120 OTTHUMG00000044053 uc004fvl.4 NM_004081 CCDS48209 Q9NQZ3 7670487 DAZ1 400003 121012 +HGNC:15964 DAZ2 deleted in azoospermia 2 protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 "pDP1678|MGC126442" RNA binding motif containing 725 2001-06-25 2015-08-27 57055 ENSG00000205944 OTTHUMG00000044060 uc065cvg.1 AF248480 NM_020363 "CCDS35485|CCDS48210|CCDS65375" Q13117 10936047 MGI:1342328 DAZ2 400026 121016 +HGNC:15965 DAZ3 deleted in azoospermia 3 protein-coding gene gene with protein product Approved Yq11.23 Yq11.23 RNA binding motif containing 725 2001-06-25 2015-08-27 57054 ENSG00000187191 OTTHUMG00000045099 uc004fwk.4 AF248481 NM_020364 CCDS35489 Q9NR90 10936047 DAZ3 400027 121018 +HGNC:15966 DAZ4 deleted in azoospermia 4 protein-coding gene gene with protein product Approved Yq11.23 Yq11.23 RNA binding motif containing 725 2001-06-25 2015-08-27 57135 ENSG00000205916 OTTHUMG00000045100 uc065cwa.1 AF248482 NM_001005375 CCDS55557 Q86SG3 "10936047|14639527" DAZ4 121020 +HGNC:2683 DAZAP1 DAZ associated protein 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC19907 deleted in azoospermia associated protein 1 RNA binding motif containing 725 1999-12-07 2014-11-19 26528 ENSG00000071626 OTTHUMG00000180058 uc002lsn.5 NM_170711 "CCDS12065|CCDS12066" Q96EP5 "10857750|23658607" MGI:1917498 RGD:1305280 DAZAP1 607430 +HGNC:2684 DAZAP2 DAZ associated protein 2 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 KIAA0058 1999-12-07 2015-08-24 9802 ENSG00000183283 OTTHUMG00000169649 uc001ryb.4 D31767 NM_014764 "CCDS8809|CCDS44884|CCDS44885|CCDS44886|CCDS44887|CCDS44888" Q15038 "10857750|7584044" MGI:1344344 RGD:1307407 DAZAP2 607431 +HGNC:43869 DAZAP2P1 DAZ associated protein 2 pseudogene 1 pseudogene pseudogene Approved 2q33.1 02q33.1 2012-04-04 2012-04-04 645805 ENSG00000223825 OTTHUMG00000154581 NG_008858 PGOHUM00000240482 +HGNC:2685 DAZL deleted in azoospermia like protein-coding gene gene with protein product Approved 3p24.3 03p24.3 "DAZH|SPGYLA|MGC26406|DAZL1" DAZLA deleted in azoospermia-like RNA binding motif containing 725 1997-04-25 2016-01-26 2016-10-05 1618 ENSG00000092345 OTTHUMG00000157050 uc062hfm.1 BC027595 NM_001351 "CCDS43059|CCDS54556" Q92904 8896558 MGI:1342328 RGD:1591714 DAZL 601486 +HGNC:43904 DBET D4Z4 binding element transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved 4q35.2 04q35.2 "DBE-T|DUX4L30" chromatin-associated long non-coding RNA Long non-coding RNAs 788 2013-10-08 2015-08-17 100419743 ENSG00000281591 OTTHUMG00000189731 JQ639078 NR_121644 22541069 614865 +HGNC:17364 DBF4 DBF4 zinc finger protein-coding gene gene with protein product Approved 7q21.12 07q21.12 "ASK|chif|ZDBF1|DBF4A" "activator of S phase kinase|chiffon homolog (Drosophila)|zinc finger, DBF-type containing 1|DBF4 zinc finger A" DBF4 homolog (S. cerevisiae) Zinc fingers DBF-type 75 2005-11-15 2014-02-17 2016-10-05 10926 ENSG00000006634 OTTHUMG00000131034 uc003ujf.1 AF160876 NM_006716 CCDS5611 Q9UBU7 "10373557|10517317" MGI:1351328 RGD:1305854 DBF4 604281 +HGNC:17883 DBF4B DBF4 zinc finger B protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "FLJ13087|DRF1|ASKL1|chifb|ZDBF1B" "chiffon homolog B (Drosophila)|zinc finger, DBF-type containing 1B" DBF4 homolog B (S. cerevisiae) Zinc fingers DBF-type 75 2006-02-06 2014-02-17 2016-04-25 80174 ENSG00000161692 OTTHUMG00000165717 uc002ihf.4 AF465820 NM_025104 "CCDS11485|CCDS45706" Q8NFT6 15668232 RGD:7649594 DBF4B 611661 +HGNC:45059 DBF4P1 DBF4 zinc finger pseudogene 1 pseudogene pseudogene Approved 10q21.3 10q21.3 DBF4 homolog pseudogene 1 2013-02-07 2014-02-17 2014-02-17 645084 ENSG00000235489 OTTHUMG00000018323 NG_006968 PGOHUM00000238503 +HGNC:45060 DBF4P2 DBF4 zinc finger pseudogene 2 pseudogene pseudogene Approved 2q13 02q13 DBF4 homolog pseudogene 2 2013-02-07 2014-02-17 2014-02-17 100420180 NG_023599 PGOHUM00000240257 +HGNC:45061 DBF4P3 DBF4 zinc finger pseudogene 3 pseudogene pseudogene Approved 2p11.2 02p11.2 DBF4 homolog pseudogene 3 2013-02-07 2014-02-17 2014-02-17 PGOHUM00000240715 +HGNC:2689 DBH dopamine beta-hydroxylase protein-coding gene gene with protein product Approved 9q34.2 09q34.2 DBM dopamine beta-monooxygenase dopamine beta-hydroxylase (dopamine beta-monooxygenase) 2001-06-22 2016-03-15 2016-10-05 1621 ENSG00000123454 OTTHUMG00000020878 uc004cel.4 X13256 NM_000787 CCDS6977 P09172 MGI:94864 RGD:2489 BIOMBD|http://www.biopku.org/home/biomdb.asp DBH 609312 121022 objectId:2486 1.14.17.1 +HGNC:24155 DBH-AS1 DBH antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.2 09q34.2 BPR NCRNA00118 "non-protein coding RNA 118|DBH antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2008-09-12 2011-08-11 2012-08-15 2015-11-04 138948 ENSG00000225756 OTTHUMG00000020877 uc031tfk.3 AF129263 NR_002783 "10686491|26393879" +HGNC:2690 DBI diazepam binding inhibitor, acyl-CoA binding protein protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "ACBP|ACBD1" endozepine diazepam binding inhibitor (GABA receptor modulator, acyl-Coenzyme A binding protein) 1988-06-09 2016-05-27 2016-10-05 1622 ENSG00000155368 OTTHUMG00000131403 uc002tlx.5 L76366 NM_020548 "CCDS2126|CCDS42740|CCDS42741|CCDS74568|CCDS54390|CCDS54391" P07108 1440058 MGI:94865 RGD:2490 DBI 125950 +HGNC:2693 DBIL3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-05-28 +HGNC:2694 DBIL4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-05-28 +HGNC:38519 DBIL5P diazepam binding inhibitor-like 5, pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 ELP2P endozepine-like peptide 2 pseudogene 2010-12-02 2012-10-03 100131454 ENSG00000231784 OTTHUMG00000132485 NR_024120 MGI:108039 +HGNC:38518 DBIL5P2 diazepam binding inhibitor-like 5 pseudogene 2 pseudogene pseudogene Approved 2p15 02p15 ELP1P endozepine-like peptide 1 pseudogene 2010-12-02 2010-12-02 100169989 ENSG00000242412 OTTHUMG00000152565 NG_008463 PGOHUM00000240066 +HGNC:2692 DBIP1 diazepam binding inhibitor, acyl-CoA binding protein pseudogene 1 pseudogene pseudogene Approved 6q14.1 06q14.1 DBIL2 "diazepam binding inhibitor-like 2 (pseudogene)|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 1" 1991-07-24 2010-05-28 2016-06-27 2016-06-27 1624 ENSG00000218748 OTTHUMG00000015077 NG_001112 7789980 PGOHUM00000243260 +HGNC:2691 DBIP2 diazepam binding inhibitor, acyl-CoA binding protein pseudogene 2 pseudogene pseudogene Approved 5q14.1 05q14.1 DBIL1 "diazepam binding inhibitor-like 1|diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 2" 1991-07-24 2010-05-28 2016-06-27 2016-06-27 1623 ENSG00000251366 OTTHUMG00000162653 NG_003024 PGOHUM00000235295 +HGNC:38517 DBIP3 diazepam binding inhibitor, acyl-CoA binding protein pseudogene 3 pseudogene pseudogene Approved 16p13.3 16p13.3 diazepam binding inhibitor (GABA receptor modulator, acyl-CoA binding protein) pseudogene 3 2010-10-19 2016-06-27 2016-06-27 791082 NG_005846 PGOHUM00000248973 +HGNC:2695 DBN1 drebrin 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 D0S117E 1993-09-08 2015-08-24 1627 ENSG00000113758 OTTHUMG00000130856 uc003mgy.3 NM_080881 "CCDS4420|CCDS4421" Q16643 8216329 MGI:1931838 RGD:70885 DBN1 126660 +HGNC:28455 DBNDD1 dysbindin domain containing 1 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "MGC3101|FLJ12582" dysbindin (dystrobrevin binding protein 1) domain containing 1 2006-04-04 2016-06-10 2016-06-10 79007 ENSG00000003249 OTTHUMG00000138984 uc002fqf.3 AK090696 NM_024043 "CCDS10991|CCDS42223|CCDS73931" Q9H9R9 12477932 MGI:1919435 RGD:1310008 DBNDD1 +HGNC:15881 DBNDD2 dysbindin domain containing 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 HSMNP1 C20orf35 "chromosome 20 open reading frame 35|dysbindin (dystrobrevin binding protein 1) domain containing 2" 2001-06-21 2006-04-04 2016-04-05 2016-04-05 55861 ENSG00000244274 OTTHUMG00000032576 uc002xnz.4 AF220191 NM_018478 "CCDS42880|CCDS42881|CCDS56193|CCDS56194" Q9BQY9 16618118 MGI:106562 RGD:1559521 DBNDD2 611453 +HGNC:2696 DBNL drebrin like protein-coding gene gene with protein product Approved 7p13 07p13 "SH3P7|HIP-55|ABP1" "actin-binding protein 1|HPK1-interacting protein of 55 kDa" drebrin-like 1999-09-16 2016-02-03 2016-02-03 28988 ENSG00000136279 OTTHUMG00000155350 uc003tjq.5 AF151364 NM_014063 "CCDS34622|CCDS34623|CCDS47579|CCDS64633|CCDS64634" Q9UJU6 10087302 MGI:700006 RGD:70941 DBNL 610106 +HGNC:2697 DBP D-box binding PAR bZIP transcription factor protein-coding gene gene with protein product Approved 19q13.33 19q13.33 DABP D site of albumin promoter (albumin D-box) binding protein PAR bZIP family 1248 1991-11-27 2016-04-27 2016-04-27 1628 ENSG00000105516 OTTHUMG00000183319 uc002pjx.5 U06936 NM_001352 CCDS12728 Q10586 "1535333|7835883" MGI:94866 RGD:2491 DBP 124097 +HGNC:15594 DBR1 debranching RNA lariats 1 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "debranching enzyme (S. Cerevisiae) homolog 1|debranching enzyme homolog 1 (S. cerevisiae)" 2001-04-26 2013-05-01 2013-05-01 51163 ENSG00000138231 OTTHUMG00000159824 uc003erv.4 AF180919 NM_016216 CCDS33863 Q9UK59 10982890 MGI:1931520 RGD:1598038 DBR1 607024 +HGNC:2698 DBT dihydrolipoamide branched chain transacylase E2 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "dihydrolipoyllysine-residue (2-methylpropanoyl)transferase|lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial" dihydrolipoamide branched chain transacylase (E2 component of branched chain keto acid dehydrogenase complex; maple syrup urine disease) 1989-06-30 2004-11-15 2016-10-05 1629 ENSG00000137992 OTTHUMG00000010921 uc001dta.4 BC016675 NM_001918 CCDS767 P11182 "1420314|1429740" MGI:105386 RGD:68403 DBT 248610 121025 2.3.1.168 +HGNC:33185 DBX1 developing brain homeobox 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 NKL subclass homeoboxes and pseudogenes 519 2007-03-14 2014-11-19 120237 ENSG00000109851 OTTHUMG00000166043 uc021qey.2 NM_001029865 A6NMT0 11239429 MGI:94867 RGD:1308896 DBX1 8355 +HGNC:33186 DBX2 developing brain homeobox 2 protein-coding gene gene with protein product Approved 12q12 12q12 FLJ16139 NKL subclass homeoboxes and pseudogenes 519 2007-03-14 2014-11-19 440097 ENSG00000185610 OTTHUMG00000169559 uc001rok.2 NM_001004329 CCDS31781 Q6ZNG2 11239429 MGI:107445 RGD:1359605 DBX2 8356 +HGNC:30911 DCAF1 DDB1 and CUL4 associated factor 1 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "KIAA0800|MGC102804" VPRBP Vpr (HIV-1) binding protein DDB1 and CUL4 associated factors 498 2006-01-09 2016-06-06 2016-06-06 2016-06-06 9730 ENSG00000145041 OTTHUMG00000156895 uc062kgs.1 AB018343 NM_014703 "CCDS74943|CCDS74944" Q9Y4B6 "8195203|11223251" MGI:2445220 RGD:1305176 +HGNC:20229 DCAF4 DDB1 and CUL4 associated factor 4 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 DKFZp434K114 "WDR21|WDR21A" "WD repeat domain 21|WD repeat domain 21A" "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2003-01-15 2009-07-17 2009-07-17 2016-10-05 26094 ENSG00000119599 OTTHUMG00000160542 uc001xng.4 BC018979 NM_015604 "CCDS41968|CCDS55926|CCDS9809|CCDS9810" Q8WV16 16949367 MGI:1921078 RGD:1306241 DCAF4 616372 +HGNC:27723 DCAF4L1 DDB1 and CUL4 associated factor 4 like 1 protein-coding gene gene with protein product Approved 4p13 04p13 WDR21B WD repeat domain 21B WD repeat domain containing 362 2005-04-08 2009-07-17 2016-06-30 2016-06-30 285429 ENSG00000182308 OTTHUMG00000160527 uc003gwk.2 BC035027 NM_001029955 CCDS33978 Q3SXM0 DCAF4L1 +HGNC:26657 DCAF4L2 DDB1 and CUL4 associated factor 4 like 2 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 WDR21C WD repeat domain 21C WD repeat domain containing 362 2005-04-21 2009-07-17 2016-06-30 2016-06-30 138009 ENSG00000176566 OTTHUMG00000163767 uc003ydz.3 AL833507 NM_152418 CCDS6245 Q8NA75 14702039 DCAF4L2 +HGNC:20224 DCAF5 DDB1 and CUL4 associated factor 5 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 "BCRP2|D14S1461E|BCRG2|KIAA1824" WDR22 WD repeat domain 22 "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2003-01-15 2009-07-17 2009-07-17 2016-01-15 8816 ENSG00000139990 OTTHUMG00000171699 uc001xkp.4 AB058727 NM_003861 "CCDS32106|CCDS61480|CCDS61481|CCDS73646" Q96JK2 "9740667|9521877|16949367" MGI:2444785 RGD:1306535 DCAF5 603812 +HGNC:30002 DCAF6 DDB1 and CUL4 associated factor 6 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 PC326 IQWD1 IQ motif and WD repeats 1 "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2004-09-01 2009-07-17 2009-07-17 2016-10-05 55827 ENSG00000143164 OTTHUMG00000034572 uc001gev.5 AL136738 NM_018442 "CCDS1267|CCDS30933|CCDS55657|CCDS55658" Q58WW2 "12032826|16949367" MGI:1921356 RGD:1561961 DCAF6 610494 +HGNC:30915 DCAF7 DDB1 and CUL4 associated factor 7 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "HAN11|SWAN-1" "seven-WD-repeat protein of the AN11 family-1|human anthocyanin" WDR68 WD repeat domain 68 "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2005-05-26 2009-07-17 2009-07-17 2015-07-09 10238 ENSG00000136485 OTTHUMG00000178902 uc021ubm.4 U94747 NM_005828 CCDS74127 P61962 "9192870|20940704|16949367" MGI:1919083 RGD:1305140 DCAF7 605973 +HGNC:24891 DCAF8 DDB1 and CUL4 associated factor 8 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "H326|FLJ35857" WDR42A WD repeat domain 42A "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2004-09-01 2009-07-17 2009-07-17 2016-10-05 50717 ENSG00000132716 OTTHUMG00000031604 uc010pjb.2 AK093176 NM_015726 CCDS1200 Q5TAQ9 "11401431|16949367" MGI:91860 RGD:1308513 DCAF8 615820 404167 +HGNC:31810 DCAF8L1 DDB1 and CUL4 associated factor 8 like 1 protein-coding gene gene with protein product Approved Xp21.3 Xp21.3 WDR42B WD repeat domain 42B WD repeat domain containing 362 2004-09-01 2009-07-17 2016-06-30 2016-10-05 139425 ENSG00000226372 OTTHUMG00000021312 uc004dbx.2 XM_066690 CCDS35222 A6NGE4 DCAF8L1 +HGNC:31811 DCAF8L2 DDB1 and CUL4 associated factor 8 like 2 protein-coding gene gene with protein product Approved Xp21.3 Xp21.3 WDR42C WD repeat domain 42C WD repeat domain containing 362 2004-09-01 2009-07-17 2016-06-30 2016-10-05 347442 ENSG00000189186 OTTHUMG00000021305 uc064ykq.1 XM_293354 CCDS59162 P0C7V8 DCAF8L2 +HGNC:23686 DCAF10 DDB1 and CUL4 associated factor 10 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 "MGC10765|FLJ23201" WDR32 WD repeat domain 32 "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2005-01-18 2009-07-17 2009-07-17 2015-07-09 79269 ENSG00000122741 OTTHUMG00000019934 uc004aao.5 BC003520 NM_024345 "CCDS6613|CCDS75835" Q5QP82 16949367 MGI:2140179 RGD:1304730 DCAF10 +HGNC:20258 DCAF11 DDB1 and CUL4 associated factor 11 protein-coding gene gene with protein product Approved 14q12 14q12 "PRO2389|GL014" WDR23 WD repeat domain 23 "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2003-01-15 2009-07-17 2009-07-17 2016-10-05 80344 ENSG00000100897 OTTHUMG00000028793 uc001wlw.4 AF130070 NM_025230 "CCDS9610|CCDS41929" Q8TEB1 16949367 MGI:90168 RGD:1311288 613317 +HGNC:19911 DCAF12 DDB1 and CUL4 associated factor 12 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "DKFZP434O125|MGC1058|CT102|TCC52" cancer/testis antigen 102 "KIAA1892|WDR40A" "KIAA1892|WD repeat domain 40A" "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2003-11-21 2009-07-17 2009-07-17 2016-10-05 25853 ENSG00000198876 OTTHUMG00000019806 uc003ztt.3 AB067479 NM_015397 CCDS6549 Q5T6F0 "11572484|9110174|16949367" MGI:1916220 RGD:1594034 DCAF12 +HGNC:29395 DCAF12L1 DDB1 and CUL4 associated factor 12 like 1 protein-coding gene gene with protein product Approved Xq25 Xq25 KIAA1892L WDR40B WD repeat domain 40B WD repeat domain containing 362 2004-06-03 2009-07-17 2016-06-30 2016-06-30 139170 ENSG00000198889 OTTHUMG00000022353 uc004eul.4 BC035674 NM_178470 CCDS14610 Q5VU92 12477932 MGI:2444462 RGD:1563873 DCAF12L1 +HGNC:32950 DCAF12L2 DDB1 and CUL4 associated factor 12 like 2 protein-coding gene gene with protein product Approved Xq25 Xq25 WDR40C WD repeat domain 40C WD repeat domain containing 362 2006-07-06 2009-07-17 2016-06-30 2016-06-30 340578 ENSG00000198354 OTTHUMG00000022348 uc004euk.3 AL445072 NM_001013628 CCDS43991 Q5VW00 MGI:2445178 RGD:1560768 DCAF12L2 +HGNC:24535 DCAF13 DDB1 and CUL4 associated factor 13 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "DKFZP564O0463|Gm83|HSPC064" WDSOF1 WD repeats and SOF1 domain containing "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2005-05-26 2009-07-17 2009-07-17 2015-07-09 25879 ENSG00000164934 OTTHUMG00000164888 uc064pja.1 AK074725 NM_015420 CCDS34934 Q9NV06 "11042152|16949367" MGI:2684929 RGD:1308458 DCAF13 616196 +HGNC:43866 DCAF13P1 DDB1 and CUL4 associated factor 13 pseudogene 1 pseudogene pseudogene Approved 7q22.3 07q22.3 2012-04-04 2014-11-19 100129009 ENSG00000242562 OTTHUMG00000157588 NG_012000 PGOHUM00000233518 +HGNC:43867 DCAF13P2 DDB1 and CUL4 associated factor 13 pseudogene 2 pseudogene pseudogene Approved 5p15.1 05p15.1 2012-04-04 2014-11-18 100288979 ENSG00000250816 OTTHUMG00000160375 NG_021876 PGOHUM00000235510 +HGNC:43868 DCAF13P3 DDB1 and CUL4 associated factor 13 pseudogene 3 pseudogene pseudogene Approved 15q21.2 15q21.2 2012-04-04 2014-11-18 100132724 ENSG00000259378 OTTHUMG00000172459 NR_027642 PGOHUM00000247117 +HGNC:25095 DCAF15 DDB1 and CUL4 associated factor 15 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 MGC99481 C19orf72 chromosome 19 open reading frame 72 DDB1 and CUL4 associated factors 498 2009-04-02 2009-07-17 2009-07-17 2015-07-09 90379 ENSG00000132017 OTTHUMG00000181882 uc002mxt.4 BC002926 NM_138353 CCDS32926 Q66K64 16949367 MGI:2684420 RGD:1304881 DCAF15 +HGNC:25987 DCAF16 DDB1 and CUL4 associated factor 16 protein-coding gene gene with protein product Approved 4p15.31 04p15.31 FLJ20280 C4orf30 chromosome 4 open reading frame 30 DDB1 and CUL4 associated factors 498 2006-07-17 2009-07-17 2009-07-17 2016-10-05 54876 ENSG00000163257 OTTHUMG00000128536 uc003gpn.3 AK000287 NM_017741 CCDS3423 Q9NXF7 12477932 RGD:7661830 DCAF16 +HGNC:25784 DCAF17 DDB1 and CUL4 associated factor 17 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 FLJ13096 Woodhouse-Sakati syndrome C2orf37 chromosome 2 open reading frame 37 DDB1 and CUL4 associated factors 498 2006-03-24 2009-07-17 2009-07-17 2015-07-09 80067 ENSG00000115827 OTTHUMG00000132259 uc002ugx.3 AK023158 NM_025000 "CCDS2243|CCDS54419" Q5H9S7 16949367 MGI:1923013 RGD:1565551 DCAF17 612515 171038 +HGNC:26238 DCAKD dephospho-CoA kinase domain containing protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ22955 2005-12-20 2014-11-18 79877 ENSG00000172992 OTTHUMG00000179947 uc032fjr.2 BC006546 NM_024819 CCDS11493 Q8WVC6 MGI:1915337 RGD:1359211 DCAKD +HGNC:24459 DCANP1 dendritic cell associated nuclear protein protein-coding gene gene with protein product Approved 5q31.1 05q31.1 DCNP1 dendritic cell nuclear protein 1 C5orf20 chromosome 5 open reading frame 20 2005-06-09 2014-08-15 2016-06-10 2016-06-10 140947 ENSG00000251380 OTTHUMG00000163308 BF358185 NM_130848 CCDS4186 Q8TF63 "10737800|11798177|20693543" 609710 +HGNC:21479 DCBLD1 discoidin, CUB and LCCL domain containing 1 protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "MGC46341|dJ94G16.1" 2003-06-17 2016-10-05 285761 ENSG00000164465 OTTHUMG00000015455 uc003pxs.4 AK055462 NM_173674 CCDS34522 Q8N8Z6 MGI:1913936 RGD:1307211 DCBLD1 +HGNC:24627 DCBLD2 discoidin, CUB and LCCL domain containing 2 protein-coding gene gene with protein product Approved 3q12.1 03q12.1 "CLCP1|ESDN" 2004-05-25 2016-10-05 131566 ENSG00000057019 OTTHUMG00000151985 uc003dtd.4 NM_080927 CCDS46878 Q96PD2 11447234 MGI:1920629 RGD:620543 DCBLD2 608698 +HGNC:2701 DCC DCC netrin 1 receptor protein-coding gene gene with protein product Approved 18q21.2 18q21.2 "IGDCC1|NTN1R1" immunoglobulin superfamily, DCC subclass, member 1 deleted in colorectal carcinoma "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 1990-05-25 2014-06-20 2016-10-05 1630 ENSG00000187323 OTTHUMG00000132698 uc002lfe.3 X76132 NM_005215 CCDS11952 P43146 "2294591|24400119" MGI:94869 RGD:2492 DCC 120470 244810 +HGNC:14669 DCD dermcidin protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "AIDD|PIF|DSEP|HCAP|DCD-1" "proteolysis inducing factor|preproteolysin|diffusible survival/evasion peptide|survival promoting peptide" 2001-02-27 2016-10-05 117159 ENSG00000161634 OTTHUMG00000169937 uc001sgj.4 AF144011 NM_053283 "CCDS8884|CCDS73478" P81605 11694882 DCD 606634 +HGNC:20625 DCDC1 doublecortin domain containing 1 protein-coding gene gene with protein product Approved 11p14.1 11p14.1 2003-03-14 2014-11-19 341019 ENSG00000170959 OTTHUMG00000150144 uc001msv.4 AY247970 NM_181807 CCDS7872 P59894 12820024 RGD:6501637 DCDC1 608062 +HGNC:18141 DCDC2 doublecortin domain containing 2 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "RU2|KIAA1154|DCDC2A|NPHP19" 2003-05-20 2016-10-05 51473 ENSG00000146038 OTTHUMG00000016275 uc003ndx.4 AB032980 NM_016356 CCDS4550 Q9UHG0 "10601354|10574461|25557784" MGI:2652818 RGD:1310227 DCDC2 605755 434377 +HGNC:32576 DCDC2B doublecortin domain containing 2B protein-coding gene gene with protein product Approved 1p35.2 01p35.2 2006-04-21 2016-10-05 149069 ENSG00000222046 OTTHUMG00000005741 uc001bun.2 BC128073 XM_940631 CCDS44100 A2VCK2 MGI:2686212 RGD:1583476 DCDC2B +HGNC:32696 DCDC2C doublecortin domain containing 2C protein-coding gene gene with protein product Approved 2p25.3 02p25.3 doublecortin domain containing 2C pseudogene 2006-04-21 2010-09-24 2015-08-24 728597 ENSG00000214866 OTTHUMG00000151490 uc032nde.2 AC010907 XM_001715903 CCDS74481 A8MYV0 MGI:1915761 DCDC2C +HGNC:24799 DCDC5 doublecortin domain containing 5 protein-coding gene gene with protein product Approved 11p14.1 11p14.1 FLJ46154 2007-02-26 2013-02-18 100506627 AK128035 NM_198462 CCDS73270 Q6ZRR9 16869982 MGI:3045363 RGD:1562221 DCDC5 612321 +HGNC:13681 DCHS1 dachsous cadherin-related 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "FIB1|KIAA1773|FLJ11790|CDHR6" cadherin-related family member 6 "CDH25|PCDH16" "protocadherin 16|dachsous 1 (Drosophila)" Cadherin related 24 2000-09-28 2004-09-03 2013-10-04 2015-09-11 8642 ENSG00000166341 OTTHUMG00000133398 uc001mem.3 AB000895 NM_003737 CCDS7771 Q96JQ0 9199196 MGI:2685011 RGD:1309878 DCHS1 603057 371941 +HGNC:23111 DCHS2 dachsous cadherin-related 2 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "CDHJ|FLJ20047|PCDHJ|CDHR7" cadherin-related family member 7 "CDH27|PCDH23" "cadherin-like 27|dachsous 2 (Drosophila)" Cadherin related 24 2003-09-11 2004-09-03 2013-10-04 2016-10-05 54798 ENSG00000197410 OTTHUMG00000161556 uc003inw.2 BC140919 NM_001142552 "CCDS3785|CCDS47150" Q6V1P9 15003449 MGI:2685263 RGD:6503563 DCHS2 612486 +HGNC:2704 DCK deoxycytidine kinase protein-coding gene gene with protein product Approved 4q13.3 04q13.3 1991-08-08 2016-10-05 1633 ENSG00000156136 OTTHUMG00000129908 uc003hfx.4 M60527 NM_000788 CCDS3548 P27707 8406512 MGI:102726 RGD:620667 DCK 125450 2.7.1.74 +HGNC:2700 DCLK1 doublecortin like kinase 1 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "KIAA0369|DCLK|DCDC3A" DCAMKL1 "doublecortin and CaM kinase-like 1|doublecortin-like kinase 1" 1999-02-22 2007-04-02 2015-11-30 2015-11-30 9201 ENSG00000133083 OTTHUMG00000016729 uc001uvf.4 AB002367 NM_004734 "CCDS9354|CCDS55895|CCDS73561|CCDS81762" O15075 "9747029|10036192" MGI:1330861 RGD:68437 DCLK1 604742 objectId:2005 +HGNC:19002 DCLK2 doublecortin like kinase 2 protein-coding gene gene with protein product Approved 4q31.23-q31.3 04q31.23-q31.3 "MGC45428|DCDC3|DCDC3B|DCK2" DCAMKL2 "doublecortin and CaM kinase-like 2|doublecortin-like kinase 2" 2005-01-20 2007-04-02 2015-11-30 2016-10-11 166614 ENSG00000170390 OTTHUMG00000161444 uc003ilm.5 BC032726 NM_001040260 "CCDS34076|CCDS47142" Q8N568 12477932 MGI:1918012 RGD:1308384 DCLK2 613166 objectId:2006 +HGNC:19005 DCLK3 doublecortin like kinase 3 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "KIAA1765|DCDC3C" DCAMKL3 "doublecortin and CaM kinase-like 3|doublecortin-like kinase 3" 2005-01-20 2007-04-02 2015-11-30 2016-10-05 85443 ENSG00000163673 OTTHUMG00000155805 uc003cgi.2 AB051552 XM_047355 CCDS43064 Q9C098 "11214970|16869982" MGI:3039580 RGD:1309232 DCLK3 613167 objectId:2007 +HGNC:17660 DCLRE1A DNA cross-link repair 1A protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "SNM1|PSO2|KIAA0086|hSNM1" PSO2 homolog (S. cerevisiae) DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) 2002-01-18 2010-06-24 2016-10-05 9937 ENSG00000198924 OTTHUMG00000019077 uc031pxf.2 NM_014881 CCDS7584 Q6PJP8 "9806498|17804464" MGI:1930042 RGD:1306156 DCLRE1A 609682 +HGNC:17641 DCLRE1B DNA cross-link repair 1B protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "SNM1B|FLJ12810|FLJ13998" "APOLLO|PSO2 homolog (S. cerevisiae)" DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae) 2002-01-18 2010-06-24 2016-10-05 64858 ENSG00000118655 OTTHUMG00000011937 uc001eeg.4 BC029687 NM_022836 CCDS866 Q9H816 MGI:2156057 RGD:1310343 DCLRE1B 609683 +HGNC:17642 DCLRE1C DNA cross-link repair 1C protein-coding gene gene with protein product Approved 10p13 10p13 "ARTEMIS|FLJ11360|SNM1C|A-SCID" PSO2 homolog (S. cerevisiae) SCIDA "severe combined immunodeficiency, type a (Athabascan)|DNA cross-link repair 1C (PSO2 homolog, S. cerevisiae)" 2002-01-18 2010-06-24 2016-10-12 64421 ENSG00000152457 OTTHUMG00000017716 uc001inn.5 BC022254 NM_022487 "CCDS7105|CCDS31149|CCDS31150" Q96SD1 "11336668|9443881" MGI:2441769 RGD:708574 "DCLRE1Cbase: Mutation registry for Artemis deficiency|http://structure.bmc.lu.se/idbase/DCLRE1Cbase/|LRG_54|http://www.lrg-sequence.org/LRG/LRG_54" DCLRE1C 605988 121027 +HGNC:44877 DCLRE1CP1 DNA cross-link repair 1C pseudogene 1 pseudogene pseudogene Approved 10p13 10p13 2012-12-10 2012-12-10 100289151 ENSG00000237470 OTTHUMG00000017720 PGOHUM00000238362 +HGNC:2705 DCN decorin protein-coding gene gene with protein product Approved 12q21.33 12q21.33 "DSPG2|SLRR1B" decorin proteoglycan Small leucine rich repeat proteoglycans 573 1989-07-18 2014-04-16 1634 ENSG00000011465 OTTHUMG00000169998 uc001tbu.4 AF138300 NM_133507 "CCDS9039|CCDS9040|CCDS9041|CCDS9042|CCDS44951" P07585 8432526 MGI:94872 RGD:61895 DCN 125255 121034 +HGNC:18714 DCP1A decapping mRNA 1A protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "HSA275986|SMIF|SMAD4IP1" DCP1 decapping enzyme homolog A (S. cerevisiae) 2005-01-07 2013-05-02 2015-07-16 55802 ENSG00000272886 OTTHUMG00000158193 uc032rob.2 AJ275986 NM_018403 "CCDS74946|CCDS46847" Q9NPI6 MGI:1923151 RGD:1561298 DCP1A 607010 +HGNC:24451 DCP1B decapping mRNA 1B protein-coding gene gene with protein product Approved 12p13.33 12p13.33 FLJ31638 DCP1 decapping enzyme homolog B (S. cerevisiae) 2005-01-07 2013-05-02 2015-07-16 196513 ENSG00000151065 OTTHUMG00000168113 uc001qjx.2 AY146652 NM_152640 "CCDS31727|CCDS81651" Q8IZD4 "12417715|15067023" MGI:2442404 RGD:1562214 DCP1B 609843 +HGNC:24452 DCP2 decapping mRNA 2 protein-coding gene gene with protein product Approved 5q22.2 05q22.2 NUDT20 "nudix (nucleoside diphosphate linked moiety X)-type motif 20|M(7)GpppN-mRNA hydrolase" DCP2 decapping enzyme homolog (S. cerevisiae) Nudix hydrolase family 667 2005-01-07 2013-05-02 2016-10-05 167227 ENSG00000172795 OTTHUMG00000162853 uc003kqh.4 AY135173 NM_152624 "CCDS34210|CCDS56377" Q8IU60 "12218187|12417715" MGI:1917890 RGD:1562909 DCP2 609844 3.6.1.62 +HGNC:29812 DCPS decapping enzyme, scavenger protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "HSPC015|HINT-5|HSL1" 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA] diphosphatase 2005-01-07 2016-10-05 28960 ENSG00000110063 OTTHUMG00000165829 uc001qdp.3 AF077201 NM_014026 CCDS8473 Q96C86 "12198172|14523240" MGI:1916555 RGD:628887 DCPS 610534 457106 3.6.1.59 +HGNC:2708 DCR Down syndrome chromosome region other region Approved 21q22.3 21q22.3 DSCR 1990-09-10 2007-11-16 1637 1829580 +HGNC:26539 DCST1 DC-STAMP domain containing 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 FLJ32785 2005-04-25 2016-10-05 149095 ENSG00000163357 OTTHUMG00000041314 uc001fgn.3 AK057347 NM_152494 "CCDS1083|CCDS44235" Q5T197 MGI:1925022 RGD:1307756 DCST1 +HGNC:26562 DCST2 DC-STAMP domain containing 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 FLJ32934 2005-05-16 2005-08-09 2016-10-05 127579 ENSG00000163354 OTTHUMG00000037371 uc001fgm.4 AK057496 NM_144622 CCDS1082 Q5T1A1 MGI:2685606 RGD:1564557 DCST2 +HGNC:18549 DCSTAMP dendrocyte expressed seven transmembrane protein protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "DC-STAMP|FIND" "Dendritic cells (DC)-specific transmembrane protein|IL-Four INDuced" TM7SF4 transmembrane 7 superfamily member 4 2004-06-25 2012-03-27 2012-03-27 2014-11-19 81501 ENSG00000164935 OTTHUMG00000164890 uc003ylx.3 AF305068 NM_030788 "CCDS6301|CCDS59111" Q9H295 "11169400|11345591" MGI:1923016 RGD:1310435 605933 +HGNC:2709 DCT dopachrome tautomerase protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "dopachrome delta-isomerase|L-dopachrome isomerase" TYRP2 tyrosine-related protein 2 1993-11-04 2012-09-28 2016-10-05 1638 ENSG00000080166 OTTHUMG00000017206 uc001vlv.6 D17547 NM_001322186 "CCDS9470|CCDS45060" P40126 8306979 MGI:102563 RGD:1564975 DCT 191275 5.3.3.12 +HGNC:2710 DCTD dCMP deaminase protein-coding gene gene with protein product Approved 4q35.1 04q35.1 1995-10-02 2014-11-19 1635 ENSG00000129187 OTTHUMG00000160685 uc003ivf.4 L12136 XM_005262778 "CCDS3831|CCDS34108" P32321 MGI:2444529 RGD:1359671 DCTD 607638 3.5.4.12 +HGNC:2711 DCTN1 dynactin subunit 1 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 p150 glued homolog (Drosophila) dynactin 1 (p150, Glued (Drosophila) homolog) Dynactin 943 1995-10-03 2015-11-26 2016-10-12 1639 ENSG00000204843 OTTHUMG00000129963 uc002skw.2 NM_004082 "CCDS1939|CCDS46341|CCDS46342|CCDS54368|CCDS54369|CCDS46343" Q14203 1828535 MGI:107745 RGD:62038 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_237|http://www.lrg-sequence.org/LRG/LRG_237" DCTN1 601143 140067 +HGNC:44151 DCTN1-AS1 DCTN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p13.1 02p13.1 DCTN1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100189589 ENSG00000237737 OTTHUMG00000152826 uc002skz.3 BC042946 NR_024463 +HGNC:2712 DCTN2 dynactin subunit 2 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "RBP50|DCTN-50" dynactin 2 (p50) Dynactin 943 1995-10-03 2015-11-26 2015-11-26 10540 ENSG00000175203 OTTHUMG00000170124 uc001som.3 U50733 NM_006400 "CCDS44930|CCDS58245|CCDS73489" Q13561 8647893 MGI:107733 RGD:1303182 DCTN2 607376 +HGNC:2713 DCTN3 dynactin subunit 3 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 DCTN-22 dynactin 3 (p22) Dynactin 943 2000-09-01 2015-11-26 2016-10-05 11258 ENSG00000137100 OTTHUMG00000019830 uc003zux.3 AF082513 NM_007234 "CCDS6560|CCDS6561|CCDS65028|CCDS65029" O75935 "9722614|11306820" MGI:1859251 RGD:1309547 DCTN3 607387 +HGNC:15518 DCTN4 dynactin subunit 4 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 dynactin 4 (p62) Dynactin 943 2001-04-06 2015-11-26 2015-11-26 51164 ENSG00000132912 OTTHUMG00000130079 uc003lsv.4 AF195120 NM_016221 "CCDS4310|CCDS47310|CCDS47311" Q9UJW0 "10843801|16554302" MGI:1914915 RGD:71023 DCTN4 614758 308262 +HGNC:24594 DCTN5 dynactin subunit 5 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "MGC3248|p25" dynactin 5 (p25) Dynactin 943 2005-09-05 2015-11-26 2016-10-05 84516 ENSG00000166847 OTTHUMG00000131610 uc002dly.3 NM_032486 "CCDS10615|CCDS58435|CCDS58436" Q9BTE1 "10525537|15043994" MGI:1891689 RGD:1305654 DCTN5 612962 +HGNC:16964 DCTN6 dynactin subunit 6 protein-coding gene gene with protein product Approved 8p12 08p12 WS-3 dynactin 6 Dynactin 943 2003-03-20 2015-11-26 2015-11-26 10671 ENSG00000104671 OTTHUMG00000163828 uc003xhy.4 D84145 NM_006571 CCDS6076 O00399 9168138 MGI:1343154 RGD:1307549 DCTN6 612963 +HGNC:28777 DCTPP1 dCTP pyrophosphatase 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "MGC5627|RS21C6|CDA03|XTP3TPA" XTP3-transactivated protein A 2008-12-18 2014-11-19 79077 ENSG00000179958 OTTHUMG00000132416 uc002dyf.4 BC001344 NM_024096 CCDS10680 Q9H773 15740738 MGI:1913672 RGD:620933 DCTPP1 615840 3.6.1.12 +HGNC:18184 DCUN1D1 defective in cullin neddylation 1 domain containing 1 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "RP42|SCRO|DCUN1L1|Tes3|SCCRO" squamous cell carcinoma related oncogene DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae) 2005-07-11 2016-01-13 2016-10-05 54165 ENSG00000043093 OTTHUMG00000158314 uc003fld.2 "AF292100|AK056335" NM_020640 "CCDS3240|CCDS77862" Q96GG9 "10777668|15988528" MGI:2150386 RGD:1309668 DCUN1D1 605905 +HGNC:20328 DCUN1D2 defective in cullin neddylation 1 domain containing 2 protein-coding gene gene with protein product Approved 13q34 13q34 "FLJ10704|FLJ20092" C13orf17 "chromosome 13 open reading frame 17|DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)" 2003-01-29 2005-10-04 2016-01-13 2016-01-13 55208 ENSG00000150401 OTTHUMG00000017390 uc001vtr.2 AK001566 NM_018185 CCDS32013 Q6PH85 15988528 MGI:2142792 RGD:9432541 DCUN1D2 +HGNC:39889 DCUN1D2-AS DCUN1D2 antisense RNA non-coding RNA RNA, long non-coding Approved 13q34 13q34 DCUN1D2-AS2 DCUN1D2 antisense RNA 2 2011-04-08 2013-02-18 2013-02-18 2014-11-19 100874229 ENSG00000233613 OTTHUMG00000017391 uc058ynf.1 AI203167 +HGNC:39888 DCUN1D2-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:28734 DCUN1D3 defective in cullin neddylation 1 domain containing 3 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "MGC48972|FLJ41725|DKFZp686O0290|SCCRO3" DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) 2005-10-04 2016-01-13 2016-01-13 123879 ENSG00000188215 OTTHUMG00000131553 uc002dhz.4 BC040442 NM_173475 CCDS10592 Q8IWE4 15988528 MGI:2679003 RGD:1308893 DCUN1D3 616167 +HGNC:28998 DCUN1D4 defective in cullin neddylation 1 domain containing 4 protein-coding gene gene with protein product Approved 4q12 04q12 KIAA0276 DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 2005-07-11 2016-01-13 2016-10-05 23142 ENSG00000109184 OTTHUMG00000128700 uc003gze.5 D87466 NM_015115 "CCDS3487|CCDS33982|CCDS75123" Q92564 15988528 MGI:2140972 RGD:1310422 DCUN1D4 612977 +HGNC:28409 DCUN1D5 defective in cullin neddylation 1 domain containing 5 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "MGC2714|FLJ32431" DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae) 2005-10-04 2016-01-13 2016-01-13 84259 ENSG00000137692 OTTHUMG00000165822 uc001phm.4 NM_032299 CCDS8325 Q9BTE7 15988528 MGI:1924113 RGD:1307008 DCUN1D5 616522 +HGNC:2714 DCX doublecortin protein-coding gene gene with protein product Approved Xq23 Xq23 "SCLH|DC|LISX|DBCN|XLIS" doublecortex doublecortex; lissencephaly, X-linked (doublecortin) 1998-03-24 2008-08-01 2016-10-05 1641 ENSG00000077279 OTTHUMG00000022204 uc065asg.1 AF040254 NM_178153 "CCDS14557|CCDS14558|CCDS83483" O43602 "9489699|9489700" MGI:1277171 RGD:620670 DCX 300121 121038 +HGNC:18985 DCXR dicarbonyl and L-xylulose reductase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "KIDCR|DCR|SDR20C1" short chain dehydrogenase/reductase family 20C, member 1 dicarbonyl/L-xylulose reductase Short chain dehydrogenase/reductase superfamily 743 2002-07-25 2016-06-21 2016-06-21 51181 ENSG00000169738 OTTHUMG00000178483 uc002kdg.4 AB013846 NM_016286 CCDS11799 Q7Z4W1 "11882650|19027726" MGI:1915130 RGD:620031 DCXR 608347 274023 1.1.1.10 +HGNC:28360 DDA1 DET1 and DDB1 associated 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "PCIA1|MGC2594" C19orf58 chromosome 19 open reading frame 58 2006-08-22 2007-10-25 2007-10-25 2014-11-19 79016 ENSG00000130311 OTTHUMG00000182765 uc002ngd.4 BC000615 NM_024050 CCDS12357 Q9BW61 17452440 MGI:1913748 RGD:1584153 DDA1 +HGNC:2715 DDAH1 dimethylarginine dimethylaminohydrolase 1 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 DDAH 1999-10-22 2016-10-05 23576 ENSG00000153904 OTTHUMG00000191181 uc057iaf.1 AB001915 XM_017000889 "CCDS705|CCDS44170|CCDS81348" O94760 9874257 MGI:1916469 RGD:70968 DDAH1 604743 objectId:1247 3.5.3.18 +HGNC:2716 DDAH2 dimethylarginine dimethylaminohydrolase 2 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 1999-10-22 2016-10-05 23564 ENSG00000213722 OTTHUMG00000031212 uc011irf.3 AF070667 XM_011514448 CCDS4718 O95865 10493931 MGI:1859016 RGD:1302955 DDAH2 604744 objectId:1248 3.5.3.18 +HGNC:2717 DDB1 damage specific DNA binding protein 1 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 damage-specific DNA binding protein 1 (127kD) Nucleotide excision repair 1269 1995-07-06 2016-02-09 2016-10-12 1642 ENSG00000167986 OTTHUMG00000168209 uc001nrc.6 AJ002955 NM_001923 CCDS31576 Q16531 "8530102|10574459" MGI:1202384 RGD:621889 LRG_474|http://www.lrg-sequence.org/LRG/LRG_474 DDB1 600045 +HGNC:2718 DDB2 damage specific DNA binding protein 2 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "DDBB|UV-DDB2|FLJ34321|XPE" "xeroderma pigmentosum group E protein|UV-damaged DNA-binding protein 2|DDB p48 subunit" damage-specific DNA binding protein 2 (48kD) "WD repeat domain containing|Xeroderma pigmentosum complementation groups|Nucleotide excision repair" "362|1125|1269" 1995-07-06 2016-02-09 2016-10-12 1643 ENSG00000134574 OTTHUMG00000187453 uc001neb.3 NM_000107 "CCDS7927|CCDS73284" Q92466 "8407967|8530102" MGI:1355314 RGD:1310164 LRG_467|http://www.lrg-sequence.org/LRG/LRG_467 DDB2 600811 121045 +HGNC:2719 DDC dopa decarboxylase protein-coding gene gene with protein product Approved 7p12.2-p12.1 07p12.2-p12.1 AADC aromatic L-amino acid decarboxylase 1991-06-03 2015-11-13 2016-10-11 1644 ENSG00000132437 OTTHUMG00000023353 uc003tpg.5 XM_011515161 "CCDS5511|CCDS56485|CCDS56486|CCDS56487|CCDS75598|CCDS75599" P20711 1612608 MGI:94876 RGD:2494 DDC 107930 121047 objectId:1271 4.1.1.28 +HGNC:40171 DDC-AS1 DDC antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p12.1 07p12.1 2014-06-18 2014-11-19 100129427 ENSG00000226122 OTTHUMG00000155976 NR_033845 +HGNC:19714 DDHD1 DDHD domain containing 1 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "KIAA1705|PA-PLA1" phosphatidic acid-preferring phospholipase A1 SPG28 spastic paraplegia 28 (autosomal recessive) 2002-11-20 2016-10-05 80821 ENSG00000100523 OTTHUMG00000140305 uc001xah.4 AB051492 XM_011537188 "CCDS9714|CCDS53895|CCDS53896" Q8NEL9 "11214970|20359546" MGI:2150302 RGD:1308576 DDHD1 614603 180273 +HGNC:29106 DDHD2 DDHD domain containing 2 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "KIAA0725|SPG54" SAMWD1 SAM, WWE and DDHD domain containing 1 Sterile alpha motif domain containing 760 2004-02-23 2004-04-07 2004-04-05 2015-09-11 23259 ENSG00000085788 OTTHUMG00000164095 uc003xlb.4 AK056525 XM_291291 CCDS34883 O94830 "9872452|11788596|19632984|20932832" MGI:1919358 RGD:1585818 DDHD2 615003 321575 +HGNC:18961 DDI1 DNA damage inducible 1 homolog 1 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 FLJ36017 "DDI1, DNA-damage inducible 1, homolog 1 (S. cerevisiae)|DNA-damage inducible 1 homolog 1 (S. cerevisiae)|DNA-damage inducible 1 homolog 1" 2005-11-14 2015-11-16 2015-11-16 414301 ENSG00000170967 OTTHUMG00000165990 uc001phr.3 NM_001001711 CCDS31660 Q8WTU0 MGI:1919079 RGD:1559430 DDI1 A28.003 +HGNC:24578 DDI2 DNA damage inducible 1 homolog 2 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 MGC14844 "DDI1, DNA-damage inducible 1, homolog 2 (S. cerevisiae)|DNA-damage inducible 1 homolog 2 (S. cerevisiae)|DNA-damage inducible 1 homolog 2" 2005-11-14 2015-11-16 2016-10-05 84301 ENSG00000197312 OTTHUMG00000002381 uc001awz.4 NM_032341 CCDS30607 Q5TDH0 MGI:1917244 RGD:1311815 DDI2 A28.003 +HGNC:26351 DDIAS DNA damage induced apoptosis suppressor protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "FLJ38838|FLJ25416|noxin" nitric oxide-inducible C11orf82 chromosome 11 open reading frame 82 2007-07-17 2014-05-30 2016-02-09 2016-02-09 220042 ENSG00000165490 OTTHUMG00000166929 AK096157 NM_145018 CCDS8263 Q8IXT1 12477932 MGI:1921291 RGD:1559690 +HGNC:2726 DDIT3 DNA damage inducible transcript 3 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "CHOP10|GADD153|CHOP" C/EBP zeta DNA-damage-inducible transcript 3 1991-09-11 2015-11-16 2016-10-05 1649 ENSG00000175197 OTTHUMG00000170046 uc001soi.4 BC003637 NM_004083 "CCDS8943|CCDS55838" P35638 1990262 MGI:109247 RGD:62391 DDIT3 126337 321333 +HGNC:24944 DDIT4 DNA damage inducible transcript 4 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "RTP801|FLJ20500|REDD-1|REDD1|Dig2" HIF-1 responsive RTP801 DNA-damage-inducible transcript 4 2004-02-12 2015-11-16 2015-11-16 54541 ENSG00000168209 OTTHUMG00000183961 uc001jsx.2 AK000507 NM_019058 CCDS7315 Q9NX09 11884613 MGI:1921997 RGD:621731 DDIT4 607729 +HGNC:30555 DDIT4L DNA damage inducible transcript 4 like protein-coding gene gene with protein product Approved 4q24 04q24 "REDD2|Rtp801L" "regulated in development and DNA damage response 2| similar to Smhs1 protein" DNA-damage-inducible transcript 4-like 2004-02-12 2015-11-16 2016-10-05 115265 ENSG00000145358 OTTHUMG00000161019 uc003hvq.4 BC013592 NM_145244 CCDS34036 Q96D03 12477932 MGI:1920534 RGD:619738 DDIT4L 607730 +HGNC:24458 DDN dendrin protein-coding gene gene with protein product Approved 12q13.12 12q13.12 KIAA0749 2004-11-26 2016-10-05 23109 ENSG00000181418 OTTHUMG00000156183 uc001rsv.2 AB018292 XM_011538055 CCDS31791 O94850 MGI:108101 RGD:2497 DDN 610588 +HGNC:2727 DDO D-aspartate oxidase protein-coding gene gene with protein product Approved 6q21 06q21 1998-10-19 2016-10-05 8528 ENSG00000203797 OTTHUMG00000015360 uc003puc.4 D89858 NM_003649 "CCDS5082|CCDS5083" Q99489 9163533 MGI:1925528 RGD:1595123 DDO 124450 1.4.3.1 +HGNC:2728 DDOST dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "OST|KIAA0115|OST48|WBP1" "oligosaccharyltransferase subunit 48|advanced glycation end-product receptor 1" dolichyl-diphosphooligosaccharide-protein glycosyltransferase Oligosaccharyltransferase complex subunits 445 1997-12-23 2016-03-01 2016-10-05 1650 ENSG00000244038 OTTHUMG00000002844 uc001bdo.1 D29643 NM_005216 CCDS212 P39656 9367678 MGI:1194508 RGD:1308970 DDOST 602202 303832 +HGNC:2730 DDR1 discoidin domain receptor tyrosine kinase 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "RTK6|CD167" "NTRK4|PTK3A|NEP|CAK|EDDR1" discoidin domain receptor family, member 1 "Receptor Tyrosine Kinases|CD molecules" "321|471" 1994-08-29 2008-01-23 2015-09-11 780 ENSG00000204580 OTTHUMG00000031236 uc011faa.3 X99031 NM_013994 "CCDS4690|CCDS34385|CCDS47396|CCDS56411|CCDS75419" Q08345 7789998 MGI:99216 RGD:2252 DDR1 600408 objectId:1843 CD167 2.7.10.1 +HGNC:28694 DDR1-AS1 DDR1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 "bPG70P20.2|bCX111D4.7|bQB10J12.1" TIGD1L "tigger transposable element derived 1-like|DDR1 antisense RNA 1 (non-protein coding)|DDR1 antisense RNA 1" 2004-06-15 2012-04-03 2012-10-17 2016-10-05 414771 ENSG00000237775 OTTHUMG00000031229 uc063yph.1 AL137624 +HGNC:2731 DDR2 discoidin domain receptor tyrosine kinase 2 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 TKT "TYRO10|NTRKR3" discoidin domain receptor family, member 2 Receptor Tyrosine Kinases 321 1999-06-17 2008-01-23 2016-10-05 4921 ENSG00000162733 OTTHUMG00000034423 uc001gch.2 AK095975 NM_006182 CCDS1241 Q16832 9659899 MGI:1345277 RGD:619855 DDR2 191311 173530 objectId:1844 2.7.10.1 +HGNC:16110 DDRGK1 DDRGK domain containing 1 protein-coding gene gene with protein product Approved 20p13 20p13 "dJ1187M17.3|UFBP1" Dashurin C20orf116 chromosome 20 open reading frame 116 2001-07-17 2008-10-03 2008-10-03 2016-09-30 65992 ENSG00000198171 OTTHUMG00000031732 uc002wic.4 AL121891 NM_023935 CCDS13050 Q96HY6 "20036718|20228063|21494687" MGI:1924256 RGD:1309979 DDRGK1 616177 +HGNC:2732 DDT D-dopachrome tautomerase protein-coding gene gene with protein product Approved 22q11.23 22q11.23 DDCT D-dopachrome decarboxylase 1998-03-06 2015-08-27 1652 ENSG00000099977 OTTHUMG00000150798 uc062cih.1 U49785 NM_001355 CCDS13820 P30046 "9480844|9729470" MGI:1298381 RGD:61923 DDT 602750 4.1.1.84 +HGNC:33446 DDTL D-dopachrome tautomerase-like protein-coding gene gene with protein product Approved 22q11.23 22q11.23 D-dopachrome decarboxylase-like protein 2007-06-19 2015-08-27 100037417 ENSG00000099974 OTTHUMG00000150800 uc002zyy.5 CR606018 NM_001084393 CCDS42988 A6NHG4 "9729470|10591208" DDTL +HGNC:44546 DDTP1 D-dopachrome tautomerase pseudogene 1 pseudogene pseudogene Approved 3p22.2 03p22.2 2012-11-15 2012-11-15 101060160 ENSG00000230683 OTTHUMG00000156076 PGOHUM00000237591 +HGNC:2733 DDU dermo-distortive urticaria phenotype phenotype only Approved 19p 19p 2000-02-11 2003-07-23 29764 "6945804|7294069" +HGNC:2734 DDX1 DEAD-box helicase 1 protein-coding gene gene with protein product Approved 2p24.3 02p24.3 DBP-RB "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 1|DEAD (Asp-Glu-Ala-Asp) box polypeptide 1|DEAD (Asp-Glu-Ala-Asp) box helicase 1" DEAD-box helicases 499 1993-07-06 2016-09-27 2016-10-05 1653 ENSG00000079785 OTTHUMG00000090593 uc061guy.1 X70649 NM_004939 CCDS1686 Q92499 "1552844|19058135" MGI:2144727 RGD:619903 DDX1 601257 +HGNC:42171 DDX3P1 DEAD-box helicase 3 pseudogene 1 pseudogene pseudogene Approved Xq13.2 Xq13.2 DDX3YP1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 1|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, pseudogene 1" 2011-06-06 2014-10-23 2016-01-07 2016-01-07 100133180 ENSG00000232928 OTTHUMG00000021845 NG_022674 PGOHUM00000305152 +HGNC:42172 DDX3P2 DEAD-box helicase 3 pseudogene 2 pseudogene pseudogene Approved Xq13.2 Xq13.2 DDX3YP2 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 2|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, pseudogene 2" 2011-06-06 2014-10-23 2016-01-07 2016-01-07 100874489 ENSG00000230986 OTTHUMG00000040019 NG_032456 PGOHUM00000261804 +HGNC:42173 DDX3P3 DEAD-box helicase 3 pseudogene 3 pseudogene pseudogene Approved 4q24 04q24 DDX3YP3 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked pseudogene 3|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, pseudogene 3" 2011-06-06 2014-10-23 2016-01-07 2016-01-07 650560 ENSG00000251571 OTTHUMG00000160979 NG_028846 PGOHUM00000246016 +HGNC:2745 DDX3X DEAD-box helicase 3, X-linked protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "DBX|HLP2|DDX14" DDX3 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, X-linked|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked" DEAD-box helicases 499 1998-04-29 2003-06-20 2016-01-07 2016-10-05 1654 ENSG00000215301 OTTHUMG00000021369 uc033eaf.2 U50553 NM_024005 "CCDS43931|CCDS55404" O00571 "9381176|9730595" MGI:103064 RGD:1564771 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DDX3X DDX3X 300160 358713 +HGNC:2699 DDX3Y DEAD-box helicase 3, Y-linked protein-coding gene gene with protein product Approved Yq11.221 Yq11.221 DBY "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide, Y chromosome|DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked|DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked" "DEAD-box helicases|Minor histocompatibility antigens" "499|870" 1999-05-17 2003-06-20 2016-01-07 2016-10-05 8653 ENSG00000067048 OTTHUMG00000036324 uc004fsv.3 AF000984 NM_004660 CCDS14782 O15523 9381176 MGI:1349406 DDX3Y 400010 167883 +HGNC:18700 DDX4 DEAD-box helicase 4 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 VASA "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 4|DEAD (Asp-Glu-Ala-Asp) box polypeptide 4" DEAD-box helicases 499 2002-05-30 2016-01-07 2016-10-05 54514 ENSG00000152670 OTTHUMG00000097044 uc003jqg.5 AF262962 NM_024415 "CCDS3969|CCDS47208|CCDS54854|CCDS54855" Q9NQI0 "10920202|11850529" MGI:102670 RGD:1308793 DDX4 605281 +HGNC:2746 DDX5 DEAD-box helicase 5 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 p68 "HLR1|G17P1" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD)|DEAD (Asp-Glu-Ala-Asp) box polypeptide 5|DEAD (Asp-Glu-Ala-Asp) box helicase 5" DEAD-box helicases 499 1989-06-30 2016-01-07 2016-10-05 1655 ENSG00000108654 OTTHUMG00000178936 uc002jek.3 AF015812 NM_004396 "CCDS11659|CCDS82190" P17844 "22156369|18698352" MGI:105037 RGD:619906 DDX5 180630 +HGNC:2747 DDX6 DEAD-box helicase 6 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 RCK HLR2 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 6 (RNA helicase, 54kD)|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6|DEAD (Asp-Glu-Ala-Asp) box helicase 6" DEAD-box helicases 499 1992-09-14 2016-01-07 2016-01-07 1656 ENSG00000110367 OTTHUMG00000166411 uc031ygs.2 D17532 NM_004397 CCDS44751 P26196 "1579499|11839790" MGI:104976 RGD:1564560 DDX6 600326 +HGNC:13948 DDX6P1 DEAD-box helicase 6 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "DDX6-Lp|bA150A6.3" DDX6P "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 6 pseudogene|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 pseudogene|DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 pseudogene 1|DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene 1" 2003-11-26 2010-02-25 2016-01-07 2016-10-05 442192 ENSG00000230056 OTTHUMG00000031293 NG_021115 PGOHUM00000243117 +HGNC:37806 DDX6P2 DEAD-box helicase 6 pseudogene 2 pseudogene pseudogene Approved 13q31.1 13q31.1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 pseudogene 2|DEAD (Asp-Glu-Ala-Asp) box helicase 6 pseudogene 2" 2010-02-25 2016-01-07 2016-01-07 100130117 ENSG00000277914 OTTHUMG00000017160 NG_022972 PGOHUM00000292214 +HGNC:2748 DDX7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:2735 DDX10 DEAD-box helicase 10 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 HRH-J8 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 10 (RNA helicase)|DEAD (Asp-Glu-Ala-Asp) box polypeptide 10" DEAD-box helicases 499 1995-12-11 2016-01-07 2016-10-05 1662 ENSG00000178105 OTTHUMG00000166540 uc001pkm.4 U28042 NM_004398 CCDS8342 Q13206 8660968 MGI:1924841 RGD:1308990 DDX10 601235 +HGNC:44960 DDX10P1 DEAD-box helicase 10 pseudogene 1 pseudogene pseudogene Approved 10p11.23 10p11.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 pseudogene 1 2012-12-20 2016-01-07 2016-01-07 100421371 ENSG00000237135 OTTHUMG00000017903 NG_025423 PGOHUM00000262839 +HGNC:44961 DDX10P2 DEAD-box helicase 10 pseudogene 2 pseudogene pseudogene Approved 9q21.32 09q21.32 DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 pseudogene 2 2012-12-20 2016-01-07 2016-01-07 401533 ENSG00000230360 OTTHUMG00000020092 NG_021626 PGOHUM00000258384 +HGNC:2736 DDX11 DEAD/H-box helicase 11 protein-coding gene gene with protein product Approved 12p11.21 12p11.21 "CHLR1|KRG2|CHL1|ChlR1|WABS" CHL1-like helicase homolog (S. cerevisiae) "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 (S.cerevisiae CHL1-like helicase)|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11" "DEAD-box helicases|DNA helicases" "499|1167" 1995-12-11 2016-01-07 2016-01-07 1663 ENSG00000013573 OTTHUMG00000168435 uc001rjr.2 U75969 NM_030653 "CCDS8721|CCDS41767|CCDS44856|CCDS58224" Q96FC9 MGI:2443590 RGD:1306675 DDX11 601150 280563 +HGNC:44176 DDX11-AS1 DDX11 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p11.21 12p11.21 CONCR DDX11 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2016-08-05 100506660 ENSG00000245614 OTTHUMG00000168487 uc001rjq.2 AK096360 NR_038927 27477908 +HGNC:37102 DDX11L1 DEAD/H-box helicase 11 like 1 pseudogene pseudogene Approved 1p36.33 01p36.33 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 1|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 1" 2010-02-03 2016-01-07 2016-01-07 100287102 ENSG00000223972 OTTHUMG00000000961 AM992871 NR_046018 19476624 +HGNC:37103 DDX11L2 DEAD/H-box helicase 11 like 2 pseudogene pseudogene Approved 2q14.1 02q14.1 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 2|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 2" 2010-04-08 2016-01-07 2016-10-05 84771 ENSG00000236397 OTTHUMG00000047823 AM992870 NR_024004 19476624 PGOHUM00000306022 +HGNC:37104 DDX11L3 DEAD/H-box helicase 11 like 3 pseudogene pseudogene Approved 3q29 03q29 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 3|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 3" 2010-02-03 2016-01-07 2016-01-07 100302657 AM992865 NG_023050 19476624 +HGNC:37105 DDX11L4 DEAD/H-box helicase 11 like 4 pseudogene pseudogene Approved 6p25.3 06p25.3 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 4|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 4" 2010-02-03 2016-01-07 2016-01-07 100337622 AM992866 NG_016472 19476624 +HGNC:37106 DDX11L5 DEAD/H-box helicase 11 like 5 pseudogene pseudogene Approved 9p24.3 09p24.3 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 5|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 5" 2010-04-08 2016-01-07 2016-02-08 100287596 ENSG00000236875 OTTHUMG00000019419 AM992874 NG_017126 19476624 PGOHUM00000306158 +HGNC:37107 DDX11L6 DEAD/H-box helicase 11 like 6 pseudogene pseudogene Approved 9q34.3 09q34.3 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 6|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 6" 2010-04-08 2016-01-07 2016-01-07 19476624 +HGNC:37108 DDX11L7 DEAD/H-box helicase 11 like 7 pseudogene pseudogene Approved 11p15.5 11p15.5 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 7|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 7" 2010-04-08 2016-01-07 2016-01-07 19476624 +HGNC:37101 DDX11L8 DEAD/H-box helicase 11 like 8 pseudogene pseudogene Approved 12p13.33 12p13.33 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 8|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 8" 2009-06-19 2016-01-07 2016-01-07 100302090 ENSG00000256263 OTTHUMG00000168013 NG_029416 A8MPP1 19476624 PGOHUM00000305882 +HGNC:37109 DDX11L9 DEAD/H-box helicase 11 like 9 pseudogene pseudogene Approved 15q26.3 15q26.3 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 9|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 9" 2010-02-03 2016-01-07 2016-02-08 100288486 ENSG00000248472 OTTHUMG00000172276 AM992880 NR_034090 19476624 PGOHUM00000305906 +HGNC:14125 DDX11L10 DEAD/H-box helicase 11 like 10 pseudogene pseudogene Approved 16p13.3 16p13.3 "DDX11P|DDX11L1" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 pseudogene|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 1|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 10|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 10" 2000-12-21 2009-06-19 2016-01-07 2016-02-08 100287029 ENSG00000233614 OTTHUMG00000086927 AM992876 NR_045117 19476624 PGOHUM00000305917 +HGNC:37110 DDX11L11 DEAD/H-box helicase 11 like 11 pseudogene pseudogene Approved 17p13.3 17p13.3 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 11|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 11" 2010-02-03 2016-01-07 2016-01-07 100887824 AM992877 19476624 +HGNC:37112 DDX11L13 DEAD/H-box helicase 11 like 13 pseudogene pseudogene Approved 20p13 20p13 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 13|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 13" 2010-04-08 2016-01-07 2016-01-07 19476624 +HGNC:37114 DDX11L15 DEAD/H-box helicase 11 like 15 pseudogene pseudogene Approved Xp11.32 Xp11.32 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 15|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 15" 2010-04-08 2016-01-07 2016-01-07 19476624 +HGNC:37115 DDX11L16 DEAD/H-box helicase 11 like 16 pseudogene pseudogene Approved Xq28 and Yq12 Xq28 and Yq12 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 16|DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 like 16" Pseudoautosomal region 2 716 2010-02-03 2016-01-07 2016-01-07 727856 ENSG00000227159 OTTHUMG00000022678 AM992882 NG_006978.2 19476624 +HGNC:2737 DDX12P DEAD/H-box helicase 12, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 CHLR2 CHL1-like helicase homolog 2 (S. cerevisiae) DDX12 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 (S.cerevisiae CHL1-like helicase)|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12, pseudogene" DEAD-box helicases 499 1995-12-11 2011-09-01 2016-01-07 2016-01-07 440081 ENSG00000214826 OTTHUMG00000168579 U33834 XM_495908 Q92771 601151 +HGNC:2740 DDX17 DEAD-box helicase 17 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 P72 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD)|DEAD (Asp-Glu-Ala-Asp) box polypeptide 17|DEAD (Asp-Glu-Ala-Asp) box helicase 17" DEAD-box helicases 499 1999-08-20 2016-01-07 2016-01-07 10521 ENSG00000100201 OTTHUMG00000151136 uc062efu.1 U59321 NM_030881 "CCDS33646|CCDS46706" Q92841 "8871553|17226766" MGI:1914290 RGD:1304945 DDX17 608469 +HGNC:2741 DDX18 DEAD-box helicase 18 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 MrDb "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated)|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18" DEAD-box helicases 499 1999-09-28 2016-01-07 2016-10-05 8886 ENSG00000088205 OTTHUMG00000058521 uc002tlh.2 X98743 NM_006773 CCDS2120 Q9NVP1 8861962 MGI:1914192 RGD:1549712 DDX18 606355 +HGNC:20007 DDX18P1 DEAD-box helicase 18 pseudogene 1 pseudogene pseudogene Approved 14q24.1 14q24.1 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 pseudogene 1|DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 1" 2003-01-13 2016-01-07 2016-01-07 319099 ENSG00000259165 OTTHUMG00000171761 NG_002480 +HGNC:21432 DDX18P2 DEAD-box helicase 18 pseudogene 2 pseudogene pseudogene Approved 15q22.2 15q22.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 2 2008-01-28 2016-01-07 2016-01-07 651053 NG_007648 +HGNC:33966 DDX18P3 DEAD-box helicase 18 pseudogene 3 pseudogene pseudogene Approved 6p22.3 06p22.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 3 2008-01-28 2016-01-07 2016-10-05 442164 ENSG00000217414 OTTHUMG00000014321 XR_016929 PGOHUM00000301260 +HGNC:33967 DDX18P4 DEAD-box helicase 18 pseudogene 4 pseudogene pseudogene Approved 5q15 05q15 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 4 2008-01-28 2016-01-07 2016-10-05 402222 ENSG00000251553 OTTHUMG00000162746 XR_016297 PGOHUM00000301069 +HGNC:33968 DDX18P5 DEAD-box helicase 18 pseudogene 5 pseudogene pseudogene Approved 11q24.3 11q24.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 5 2008-01-28 2016-01-07 2016-10-05 646378 ENSG00000255220 OTTHUMG00000165771 XR_017110 PGOHUM00000291174 +HGNC:31126 DDX18P6 DEAD-box helicase 18 pseudogene 6 pseudogene pseudogene Approved 10q23.31 10q23.31 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene 6 2008-01-28 2016-01-07 2016-01-07 100131370 ENSG00000220585 OTTHUMG00000018735 NG_008704 PGOHUM00000238886 +HGNC:25628 DDX19A DEAD-box helicase 19A protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ11126 DDX19L "DEAD (Asp-Glu-Ala-As) box polypeptide 19-like|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19A" "DEAD-box helicases|Nucleoporins" "499|1051" 2004-11-03 2005-07-13 2016-01-07 2016-01-07 55308 ENSG00000168872 OTTHUMG00000137579 uc002eyv.4 AF183422 NM_018332 "CCDS10889|CCDS82009" Q9NUU7 12477932 MGI:99526 RGD:1303136 DDX19A +HGNC:2742 DDX19B DEAD-box helicase 19B protein-coding gene gene with protein product Approved 16q22.1 16q22.1 DBP5 DDX19 "DEAD (Asp-Glu-Ala-As) box polypeptide 19|DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (Dbp5, yeast, homolog)|DEAD (Asp-Glu-Ala-Asp) box polypeptide 19B" "DEAD-box helicases|Nucleoporins" "499|1051" 1999-12-07 2005-07-13 2016-01-07 2016-10-05 11269 ENSG00000157349 OTTHUMG00000137577 uc002eyo.5 AJ237946 NM_007242 "CCDS10888|CCDS32475|CCDS42187|CCDS58478" Q9UMR2 10428971 MGI:2148251 RGD:1593382 DDX19B 605812 +HGNC:2743 DDX20 DEAD-box helicase 20 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "DP103|GEMIN3" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 20, 103kD|DEAD (Asp-Glu-Ala-Asp) box polypeptide 20" DEAD-box helicases 499 1999-12-14 2016-01-07 2016-10-05 11218 ENSG00000064703 OTTHUMG00000011956 uc001ebs.4 AF106019 NM_007204 CCDS842 Q9UHI6 10383418 MGI:1858415 RGD:621744 DDX20 606168 +HGNC:44673 DDX20P1 DEAD-box helicase 20 pseudogene 1 pseudogene pseudogene Approved 10p15.3 10p15.3 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 pseudogene 1 2012-12-03 2016-01-07 2016-01-07 100421369 NG_025412 PGOHUM00000238330 +HGNC:2744 DDX21 DExD-box helicase 21 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "RH-II/GU|GURDB" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21|DEAD-box helicase 21" DEAD-box helicases 499 1999-12-15 2016-09-27 2016-10-05 9188 ENSG00000165732 OTTHUMG00000018366 uc001jov.3 U41387 NM_004728 "CCDS31211|CCDS73144" Q9NR30 "8614622|18180292" MGI:1860494 RGD:1307306 DDX21 606357 +HGNC:17347 DDX23 DEAD-box helicase 23 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "prp28|U5-100K|PRPF28|SNRNP100" "PRP28 homolog, yeast|DEAD (Asp-Glu-Ala-Asp) box polypeptide 23" DEAD-box helicases 499 2003-06-13 2016-01-07 2016-10-05 9416 ENSG00000174243 OTTHUMG00000170399 uc001rsm.4 AF026402 NM_004818 CCDS8770 Q9BUQ8 "9409622|9539711" MGI:1921601 RGD:1308685 DDX23 612172 +HGNC:13266 DDX24 DEAD-box helicase 24 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 24|DEAD (Asp-Glu-Ala-Asp) box polypeptide 24|DEAD (Asp-Glu-Ala-Asp) box helicase 24" DEAD-box helicases 499 2000-09-19 2016-01-07 2016-10-05 57062 ENSG00000089737 OTTHUMG00000171301 uc001ycj.4 AF214731 NM_020414 CCDS9918 Q9GZR7 "10936056|18289627" MGI:1351337 RGD:727929 DDX24 606181 +HGNC:18698 DDX25 DEAD-box helicase 25 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 GRTH gonadotropin-regulated testicular RNA helicase "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 25|DEAD (Asp-Glu-Ala-Asp) box polypeptide 25|DEAD (Asp-Glu-Ala-Asp) box helicase 25" DEAD-box helicases 499 2002-05-30 2016-01-07 2016-10-05 29118 ENSG00000109832 OTTHUMG00000165859 uc001qcz.6 AF155140 NM_013264 "CCDS44766|CCDS81646" Q9UHL0 "10608860|15096601" MGI:1353582 RGD:68381 DDX25 607663 +HGNC:15837 DDX27 DEAD-box helicase 27 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "dJ686N3.1|DRS1" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 27|DEAD (Asp-Glu-Ala-Asp) box polypeptide 27" DEAD-box helicases 499 2001-09-17 2016-01-07 2016-01-07 55661 ENSG00000124228 OTTHUMG00000033072 uc002xuh.4 AL049766 XM_011528888 CCDS13416 Q96GQ7 MGI:2385884 RGD:1305634 DDX27 616621 +HGNC:17330 DDX28 DEAD-box helicase 28 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "MDDX28|FLJ11282" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 28|DEAD (Asp-Glu-Ala-Asp) box polypeptide 28" DEAD-box helicases 499 2001-12-07 2016-01-07 2016-10-05 55794 ENSG00000182810 OTTHUMG00000137549 uc002evh.3 AF329821 NM_018380 CCDS10858 Q9NUL7 "10493829|11350955" MGI:1919236 RGD:1311976 DDX28 607618 +HGNC:16715 DDX31 DEAD-box helicase 31 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "FLJ13633|FLJ23349|FLJ14578|PPP1R25" protein phosphatase 1, regulatory subunit 25 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31|DEAD (Asp-Glu-Ala-Asp) box polypeptide 31" "DEAD-box helicases|Protein phosphatase 1 regulatory subunits" "499|694" 2001-11-27 2016-01-07 2016-10-05 64794 ENSG00000125485 OTTHUMG00000020843 uc064wsi.1 AF427339 NM_138620 "CCDS6951|CCDS6952|CCDS83433" Q9H8H2 MGI:2682639 RGD:1304895 DDX31 616533 +HGNC:17821 DDX39A DExD-box helicase 39A protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "DDXL|BAT1L|URH49" UAP56-related helicase, 49 kDa DDX39 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 39|DEAD-box helicase 39A" DEAD-box helicases 499 2002-04-19 2011-02-08 2016-09-27 2016-09-27 10212 ENSG00000123136 OTTHUMG00000182181 uc002myo.4 U90426 NM_138998 CCDS12308 O00148 7601445 MGI:1915528 RGD:619920 DDX39A +HGNC:39664 DDX39AP1 DEAD-box helicase 39A pseudogene 1 pseudogene pseudogene Approved 13q12.12 13q12.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A pseudogene 1 2011-03-18 2016-01-07 2016-10-05 646164 ENSG00000225777 OTTHUMG00000016550 NG_011331 +HGNC:13917 DDX39B DExD-box helicase 39B protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "D6S81E|UAP56" U2AF65-associated protein 56 BAT1 "HLA-B associated transcript 1|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B|DEAD-box helicase 39B" DEAD-box helicases 499 2001-07-13 2011-02-08 2016-09-27 2016-09-27 7919 ENSG00000198563 OTTHUMG00000031165 uc003ntu.4 Z37166 NM_004640 CCDS4697 Q13838 "7601445|2813433" MGI:99240 RGD:70923 DDX39B 142560 +HGNC:39771 DDX39B-AS1 DDX39B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 DDX39B antisense RNA 1 (non-protein coding) 2011-04-21 2012-08-15 2012-10-12 106478957 ENSG00000234006 OTTHUMG00000134293 uc063zxg.1 NR_133675 +HGNC:33450 DDX39BP1 DEAD-box helicase 39B pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 BAT1P1 "HLA-B associated transcript 1 pseudogene 1|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene 1" 2007-05-01 2011-02-08 2016-01-07 2016-10-05 100048904 ENSG00000233677 OTTHUMG00000130504 NG_028140 +HGNC:33461 DDX39BP2 DEAD-box helicase 39B pseudogene 2 pseudogene pseudogene Approved 6p22.1 06p22.1 BPG309N1.15 BAT1P2 "HLA-B associated transcript 1 pseudogene 2|DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B pseudogene 2" 2007-05-02 2011-02-08 2016-01-07 2016-10-05 100048923 ENSG00000238024 OTTHUMG00000130507 NG_028139 +HGNC:18674 DDX41 DEAD-box helicase 41 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "ABS|MGC8828" DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-01-07 51428 ENSG00000183258 OTTHUMG00000130858 uc003mho.4 AF195417 NM_016222 CCDS4427 Q9UJV9 10607561 MGI:1920185 RGD:1311758 DDX41 608170 +HGNC:18676 DDX42 DEAD-box helicase 42 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "RNAHP|RHELP|SF3b125|SF3B8" splicing factor 3b, subunit 8 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42|DEAD (Asp-Glu-Ala-Asp) box helicase 42" DEAD-box helicases 499 2003-06-13 2016-01-07 2016-10-05 11325 ENSG00000198231 OTTHUMG00000179011 uc002jbu.5 BC015505 NM_007372 CCDS32704 Q86XP3 "10727850|16397294" MGI:1919297 RGD:1304909 DDX42 613369 +HGNC:18677 DDX43 DEAD-box helicase 43 protein-coding gene gene with protein product Approved 6q13 06q13 "HAGE|DKFZp434H2114|CT13" cancer/testis antigen 13 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-01-07 55510 ENSG00000080007 OTTHUMG00000015033 uc003pgw.4 NM_018665 CCDS4977 Q9NXZ2 10919659 MGI:3642857 RGD:1586947 DDX43 606286 +HGNC:50780 DDX43P1 DEAD-box helicase 43 pseudogene 1 pseudogene pseudogene Approved 5q23.1 05q23.1 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 pseudogene 1 2014-06-18 2016-01-07 2016-01-07 100421307 ENSG00000248295 OTTHUMG00000162907 NG_024622 PGOHUM00000235363 +HGNC:50781 DDX43P2 DEAD-box helicase 43 pseudogene 2 pseudogene pseudogene Approved 7p12.2 07p12.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 pseudogene 2 2014-06-18 2016-01-07 2016-01-07 100533714 ENSG00000270763 OTTHUMG00000184669 NG_028665 PGOHUM00000232685 +HGNC:50782 DDX43P3 DEAD-box helicase 43 pseudogene 3 pseudogene pseudogene Approved 7q21.11 07q21.11 DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 pseudogene 3 2014-06-18 2016-01-07 2016-01-07 106481709 ENSG00000230196 OTTHUMG00000155404 NG_045386 PGOHUM00000232903 +HGNC:18681 DDX46 DEAD-box helicase 46 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "KIAA0801|FLJ25329|PRPF5|Prp5" DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-01-07 9879 ENSG00000145833 OTTHUMG00000163072 uc003kzw.5 NM_014829 "CCDS34240|CCDS75306" Q7L014 MGI:1920895 RGD:708480 DDX46 +HGNC:18682 DDX47 DEAD-box helicase 47 protein-coding gene gene with protein product Approved 12p13.1 12p13.1 "DKFZp564O176|FLJ30012|HQ0256|RRP3" DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-10-05 51202 ENSG00000213782 OTTHUMG00000168709 uc001rax.4 AK127712 NM_016355 "CCDS8655|CCDS8656" Q9H0S4 MGI:1915005 RGD:1310437 DDX47 615428 +HGNC:18684 DDX49 DEAD-box helicase 49 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 FLJ10432 DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-10-05 54555 ENSG00000105671 OTTHUMG00000182994 uc002nkq.3 NM_019070 CCDS12390 Q9Y6V7 MGI:2136689 RGD:1311124 DDX49 +HGNC:17906 DDX50 DExD-box helicase 50 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "GU2|MGC3199|GUB|RH-II/GuB" "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50|DEAD-box helicase 50" DEAD-box helicases 499 2003-06-13 2016-09-27 2016-10-05 79009 ENSG00000107625 OTTHUMG00000018362 uc001jou.3 AF334103 NM_024045 CCDS7283 Q9BQ39 11891046 MGI:2182303 RGD:1310934 DDX50 610373 +HGNC:18974 DDX50P1 DEAD-box helicase 50 pseudogene 1 pseudogene pseudogene Approved 2p22.3 02p22.3 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 50 pseudogene 1 2008-01-31 2016-01-07 2016-01-07 192146 ENSG00000229816 OTTHUMG00000152105 NG_001065 11891046 PGOHUM00000240615 +HGNC:18975 DDX50P2 DEAD-box helicase 50 pseudogene 2 pseudogene pseudogene Approved 3q25.2 03q25.2 RH_II/GuBp2 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 50 pseudogene 2 2008-01-31 2016-01-07 2016-01-07 100421328 ENSG00000240048 OTTHUMG00000159130 NG_025643 11891046 PGOHUM00000237825 +HGNC:20082 DDX51 DEAD-box helicase 51 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-01-07 317781 ENSG00000185163 OTTHUMG00000168254 uc001ujy.5 BC040185 NM_175066 CCDS41865 Q8N8A6 MGI:1916913 RGD:1309580 DDX51 +HGNC:20038 DDX52 DExD-box helicase 52 protein-coding gene gene with protein product Approved 17q12 17q12 ROK1 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52|DEAD-box helicase 52" DEAD-box helicases 499 2003-06-13 2016-09-27 2016-09-27 11056 ENSG00000278053 OTTHUMG00000188475 uc032gir.2 AF077033 NM_152300 CCDS11323 Q9Y2R4 11124703 MGI:1925644 RGD:621743 DDX52 612500 +HGNC:20083 DDX53 DEAD-box helicase 53 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "CAGE|CT26" "cancer associated gene|cancer/testis antigen 26" DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-10-05 168400 ENSG00000184735 OTTHUMG00000021248 uc004daj.4 AY039237 NM_182699 CCDS35214 Q86TM3 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DDX53 DDX53 +HGNC:20084 DDX54 DEAD-box helicase 54 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "MGC2835|APR-5|DP97" DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-10-05 79039 ENSG00000123064 OTTHUMG00000169676 uc001tup.4 AF144056 NM_024072 "CCDS31907|CCDS44984" Q8TDD1 12466272 MGI:1919240 RGD:1562539 DDX54 611665 +HGNC:20085 DDX55 DEAD-box helicase 55 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 KIAA1595 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 DEAD-box helicases 499 2003-06-13 2016-01-07 2016-01-07 57696 ENSG00000111364 OTTHUMG00000168695 uc001ufi.4 AB046815 XM_017019710 CCDS9251 Q8NHQ9 10997877 MGI:1915098 RGD:2324094 DDX55 +HGNC:49852 DDX55P1 DEAD-box helicase 55 pseudogene 1 pseudogene pseudogene Approved 12p13.2 12p13.2 DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 pseudogene 1 2014-03-18 2016-01-07 2016-01-07 100129640 ENSG00000270863 OTTHUMG00000184770 NG_021706 PGOHUM00000239675 +HGNC:18193 DDX56 DEAD-box helicase 56 protein-coding gene gene with protein product Approved 7p13 07p13 NOH61 nucleolar helicase of 61 kDa "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56|DEAD (Asp-Glu-Ala-Asp) box helicase 56" DEAD-box helicases 499 2003-06-13 2016-01-07 2016-01-07 54606 ENSG00000136271 OTTHUMG00000129211 uc003tlg.5 AJ131712 NM_019082 "CCDS5492|CCDS59053" Q9NY93 10749921 MGI:1277172 RGD:1303195 DDX56 608023 +HGNC:19102 DDX58 DExD/H-box helicase 58 protein-coding gene gene with protein product Approved 9p21.1 09p21.1 "RIG-I|FLJ13599|DKFZp434J1111" "RNA helicase RIG-I|retinoic acid inducible gene I" DEAD (Asp-Glu-Ala-Asp) box polypeptide 58 DEAD-box helicases 499 2004-05-10 2016-09-27 2016-10-05 23586 ENSG00000107201 OTTHUMG00000019746 uc003zra.4 AF038963 NM_014314 CCDS6526 O95786 21690088 MGI:2442858 RGD:1309460 DDX58 609631 422901 +HGNC:25360 DDX59 DEAD-box helicase 59 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "DKFZP564B1023|ZNHIT5" DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 "Zinc fingers HIT-type|DEAD-box helicases" "83|499" 2005-02-22 2016-01-07 2016-01-07 83479 ENSG00000118197 OTTHUMG00000035725 uc009wzk.4 BC041801 NM_001031725.4 CCDS30964 Q5T1V6 MGI:1915247 RGD:1359520 DDX59 615464 376535 +HGNC:25942 DDX60 DExD/H-box helicase 60 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 FLJ20035 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60 DEAD-box helicases 499 2008-01-08 2016-09-27 2016-09-27 55601 ENSG00000137628 OTTHUMG00000161350 uc003irp.4 AK001649 NM_017631 CCDS34097 Q8IY21 21791617 MGI:2384570 DDX60 613974 +HGNC:26429 DDX60L DEAD-box helicase 60-like protein-coding gene gene with protein product Approved 4q32.3 04q32.3 FLJ31033 DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like 2008-01-08 2016-01-07 2016-09-27 91351 ENSG00000181381 OTTHUMG00000161412 uc003irq.5 AK092461 NM_001012967 CCDS47161 Q5H9U9 26269178 DDX60L 616725 +HGNC:14677 DEAF1 DEAF1, transcription factor protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "NUDR|SPN|ZMYND5" deformed epidermal autoregulatory factor 1 (Drosophila) Zinc fingers MYND-type 87 2001-02-27 2015-11-26 2015-11-26 10522 ENSG00000177030 OTTHUMG00000165363 uc001lqq.2 AF049460 NM_021008 CCDS31327 O75398 9773984 MGI:1858496 RGD:620671 DEAF1 602635 422989 +HGNC:23658 DEC1 deleted in esophageal cancer 1 protein-coding gene gene with protein product Approved 9q33.1 09q33.1 CTS9 2003-11-28 2016-09-19 50514 ENSG00000173077 OTTHUMG00000020549 uc004bjk.1 AB022761 NM_017418 CCDS6812 Q9P2X7 "8603412|10612805" DEC1 604767 +HGNC:2753 DECR1 2,4-dienoyl-CoA reductase 1, mitochondrial protein-coding gene gene with protein product Approved 8q21.3 08q21.3 SDR18C1 short chain dehydrogenase/reductase family 18C, member 1 DECR Short chain dehydrogenase/reductase superfamily 743 1997-07-22 2015-11-11 2015-11-11 1666 ENSG00000104325 OTTHUMG00000163829 uc003yek.2 L26050 XM_017013147 CCDS6250 Q16698 "7818482|19027726" MGI:1914710 RGD:70999 DECR1 222745 1.3.1.34 +HGNC:2754 DECR2 2,4-dienoyl-CoA reductase 2, peroxisomal protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "PDCR|SDR17C1" short chain dehydrogenase/reductase family 17C, member 1 Short chain dehydrogenase/reductase superfamily 743 1999-11-15 2015-11-11 2015-11-11 26063 ENSG00000242612 OTTHUMG00000047846 uc002chb.4 AJ293009 NM_020664 CCDS10409 Q9NUI1 "11514237|19027726" MGI:1347059 RGD:71002 DECR2 615839 1.3.1.34 +HGNC:2755 DEDD death effector domain containing protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "DEFT|FLDED1|CASP8IP1|KE05|DEDD1" death effector domain-containing Death effector domain containing 1019 1999-12-10 2002-01-14 2016-10-05 9191 ENSG00000158796 OTTHUMG00000033104 uc001fyb.5 AF043733 NM_004216 "CCDS1219|CCDS81391" O75618 "9774341|9832420" MGI:1333874 RGD:620050 DEDD 606841 +HGNC:24450 DEDD2 death effector domain containing 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLAME-3 Death effector domain containing 1019 2004-02-10 2016-10-05 162989 ENSG00000160570 OTTHUMG00000182763 uc031rkz.2 AY125488 NM_133328 "CCDS12597|CCDS59391" Q8WXF8 "11965497|12235123" MGI:1914629 RGD:1588968 DEDD2 617078 +HGNC:2760 DEF6 DEF6, guanine nucleotide exchange factor protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "IBP|SLAT|SWAP70L" SWAP-70-like adaptor protein of T cells "differentially expressed in FDCP (mouse homolog) 6|differentially expressed in FDCP 6 homolog (mouse)" Pleckstrin homology domain containing 682 2000-03-29 2015-11-26 2016-10-05 50619 ENSG00000023892 OTTHUMG00000014563 uc003okk.4 AJ276095 NM_022047 CCDS4802 Q9H4E7 19251698 MGI:1346328 RGD:1307945 DEF6 610094 +HGNC:25969 DEF8 differentially expressed in FDCP 8 homolog protein-coding gene gene with protein product Approved 16q24.3 16q24.3 FLJ20186 differentially expressed in FDCP 8 homolog (mouse) 2007-08-16 2016-07-14 2016-07-14 54849 ENSG00000140995 OTTHUMG00000138989 uc002fpo.3 AK131370 NM_207514 "CCDS10989|CCDS45555|CCDS58493|CCDS58494|CCDS58495|CCDS58496" Q6ZN54 12477932 MGI:1346331 RGD:1309008 DEF8 +HGNC:2761 DEFA1 defensin alpha 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 HNP-1 "DEF1|MRS|DEFA2" "defensin, alpha 2|defensin, alpha 1, myeloid-related sequence|defensin, alpha 1" Defensins, alpha 502 1988-06-27 2005-08-31 2015-11-18 2015-11-18 1667 ENSG00000206047 OTTHUMG00000154594 uc003wqv.2 M26602 NM_004084 CCDS34797 P59665 "9030614|15944200" DEFA1 125220 +HGNC:32231 DEFA1A3 defensin alpha 1 and alpha 3, variable copy number locus other region Approved 8p23.1 08p23.1 "DEFA1|DEFA3|DEFT1P" defensin, alpha 1 and alpha 3, variable copy number locus Defensins, alpha 502 2005-08-31 2015-11-18 2015-11-18 613253 "15944200|16039093|15588320|17214878" +HGNC:33596 DEFA1B defensin alpha 1B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 defensin, alpha 1B Defensins, alpha 502 2009-08-05 2015-11-18 2015-11-18 728358 ENSG00000240247 OTTHUMG00000149850 uc064kbg.1 NM_001042500 CCDS43691 P59665 15944200 +HGNC:2762 DEFA3 defensin alpha 3 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 HNP-3 DEF3 defensin, alpha 3, neutrophil-specific Defensins, alpha 502 1993-11-05 2015-11-18 2015-11-18 1668 ENSG00000239839 OTTHUMG00000090381 uc003wqz.3 M23281 NM_005217 CCDS5962 P59666 "8477861|17214878|15944200" DEFA3 604522 +HGNC:2763 DEFA4 defensin alpha 4 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 HP-4 DEF4 defensin, alpha 4, corticostatin Defensins, alpha 502 1993-11-05 2015-11-18 2015-11-18 1669 ENSG00000164821 OTTHUMG00000090382 uc003wqu.2 X65977 NM_001925 CCDS5961 P12838 8469233 RGD:727857 DEFA4 601157 +HGNC:2764 DEFA5 defensin alpha 5 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 HD-5 DEF5 defensin, alpha 5, Paneth cell-specific Defensins, alpha 502 1993-11-05 2015-11-18 2015-11-18 1670 ENSG00000164816 OTTHUMG00000090383 uc003wra.2 BC069690 NM_021010 CCDS5963 Q01523 1429669 RGD:727951 DEFA5 600472 +HGNC:2765 DEFA6 defensin alpha 6 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "HD-6|DEF6" defensin, alpha 6, Paneth cell-specific Defensins, alpha 502 1993-11-05 2015-11-18 2015-11-18 1671 ENSG00000164822 OTTHUMG00000149984 uc003wqt.4 M98331 NM_001926 CCDS5960 Q01524 8417977 DEFA6 600471 +HGNC:31798 DEFA7P defensin alpha 7, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 DEFA7 "defensin, alpha 7|defensin, alpha 7 pseudogene" Defensins, alpha 502 2004-09-29 2007-02-23 2015-11-18 2015-11-18 724067 ENSG00000206042 OTTHUMG00000143737 AY746432 NG_005908 "15494476|15588320" +HGNC:31799 DEFA8P defensin alpha 8, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 DEFAP1 defensin, alpha 8 pseudogene Defensins, alpha 502 2004-09-29 2015-11-18 2015-11-18 449491 ENSG00000223629 OTTHUMG00000150024 AY746433 NR_073407 "15494476|15588320" +HGNC:24815 DEFA8 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:31800 DEFA9P defensin alpha 9, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 DEFAP2 defensin, alpha 9 pseudogene Defensins, alpha 502 2004-09-29 2015-11-18 2015-11-18 449492 ENSG00000233238 OTTHUMG00000150021 AY746434 NR_073408 "15494476|15588320" +HGNC:31801 DEFA10P defensin alpha 10, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 defensin, alpha 10 pseudogene Defensins, alpha 502 2004-09-29 2015-11-18 2015-11-18 449493 ENSG00000233531 OTTHUMG00000150022 AY746435 NR_029386 15494476 +HGNC:33354 DEFA11P defensin alpha 11, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 DEFAP3 defensin, alpha 11 pseudogene Defensins, alpha 502 2007-02-23 2015-11-18 2015-11-18 724068 ENSG00000234178 OTTHUMG00000150023 AY746436 NR_073421 "15494476|15588320" +HGNC:2766 DEFB1 defensin beta 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "HBD-1|DEFB-1|DEFB101|HBD1|BD1|MGC51822" "beta-defensin 1|beta defensin 1" defensin, beta 1 Defensins, beta 503 1997-05-29 2015-11-18 2015-11-18 1672 ENSG00000164825 OTTHUMG00000090367 uc003wqs.4 X92744 NM_005218 CCDS5959 P60022 7628632 MGI:1096878 RGD:619943 DEFB1 602056 +HGNC:2767 DEFB4A defensin beta 4A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "SAP1|HBD-2|DEFB-2" "beta defensin 2|beta defensin-2|beta-defensin 2" "DEFB102|DEFB2|DEFB4" "defensin, beta 2|defensin, beta 4|defensin, beta 4A" "Defensins, beta|Endogenous ligands" "503|542" 1997-08-28 2010-03-01 2015-11-18 2015-11-18 1673 ENSG00000171711 OTTHUMG00000129314 uc003wsd.4 AJ000152 NM_004942 CCDS5971 O15263 9202117 RGD:619944 DEFB4A 602215 +HGNC:30193 DEFB4B defensin beta 4B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "beta defensin 2|beta defensin-2|beta-defensin 2" DEFB4P "defensin, beta 4, pseudogene|defensin, beta 4B" Defensins, beta 503 2005-02-25 2010-03-01 2015-11-18 2015-11-18 100289462 ENSG00000177257 OTTHUMG00000143857 uc022arf.2 NM_001205266 CCDS55193 O15263 RGD:1589572 DEFB4B +HGNC:15967 DEFB103A defensin beta 103A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "HBD-3|HBP-3|HBD3|HBP3|DEFB-3" "beta defensin 3|beta defensin-3|beta-defensin 3" "DEFB3|DEFB103" "defensin, beta 3|defensin, beta 103A" Defensins, beta 503 2001-06-25 2004-06-04 2015-11-18 2015-11-18 414325 ENSG00000176797 OTTHUMG00000143855 uc003wsc.4 AF217245 NM_001081551 CCDS43701 P81534 "11223260|11085990" MGI:2675345 RGD:1561378 DEFB103A +HGNC:31702 DEFB103B defensin beta 103B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 defensin, beta 103B Defensins, beta 503 2004-06-03 2015-11-18 2015-11-18 55894 ENSG00000177243 OTTHUMG00000129313 uc003wrf.4 NM_018661 CCDS34810 P81534 MGI:2675345 DEFB103B 606611 +HGNC:18115 DEFB104A defensin beta 104A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "DEFB4|DEFB-4" DEFB104 "defensin, beta 104|defensin, beta 104A" Defensins, beta 503 2002-05-09 2005-02-25 2015-11-18 2015-11-18 140596 ENSG00000176782 OTTHUMG00000150014 uc003wrv.3 AJ314835 NM_080389 CCDS34834 Q8WTQ1 DEFB104A +HGNC:26165 DEFB104B defensin beta 104B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 defensin, beta 104B Defensins, beta 503 2005-02-25 2015-11-18 2015-11-18 503618 ENSG00000177023 OTTHUMG00000149986 uc003wrn.3 NM_001040702 CCDS34812 Q8WTQ1 DEFB104B +HGNC:18087 DEFB105A defensin beta 105A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 DEFB-5 DEFB105 "defensin, beta 105|defensin, beta 105A" Defensins, beta 503 2002-05-09 2005-03-03 2015-11-18 2015-11-18 245908 ENSG00000186562 OTTHUMG00000150011 uc011kwr.3 AB089180 NM_152250 CCDS34832 Q8NG35 "11854508|12734011" MGI:1924924 DEFB105A +HGNC:29930 DEFB105B defensin beta 105B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 defensin, beta 105B Defensins, beta 503 2005-02-28 2015-11-18 2015-11-18 504180 ENSG00000186599 OTTHUMG00000129315 uc011kwp.3 NM_001040703 CCDS34814 Q8NG35 MGI:1924924 RGD:6485037 DEFB105B +HGNC:18088 DEFB106A defensin beta 106A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 DEFB-6 DEFB106 "defensin, beta 106|defensin, beta 106A" Defensins, beta 503 2002-05-09 2005-03-03 2015-11-18 2015-11-18 245909 ENSG00000186579 OTTHUMG00000150012 uc003wru.1 AY122466 NM_152251 CCDS34833 Q8N104 11854508 MGI:2672979 DEFB106A +HGNC:28879 DEFB106B defensin beta 106B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 defensin, beta 106B Defensins, beta 503 2005-02-28 2015-11-18 2015-11-18 503841 ENSG00000187082 OTTHUMG00000129312 uc003wro.2 NM_001040704 CCDS34813 Q8N104 MGI:2672979 RGD:1563061 DEFB106B +HGNC:18086 DEFB107A defensin beta 107A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 DEFB-7 DEFB107 defensin, beta 107A Defensins, beta 503 2002-05-09 2005-02-25 2015-11-18 2015-11-18 245910 ENSG00000186572 OTTHUMG00000150013 uc003wrs.1 AF540979 NM_001037668 CCDS43699 Q8IZN7 11854508 DEFB107A +HGNC:31918 DEFB107B defensin beta 107B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 HsT21816 defensin, beta 107B Defensins, beta 503 2005-02-25 2015-11-18 2015-11-18 503614 ENSG00000198129 OTTHUMG00000149987 uc003wrq.1 NM_001040705 CCDS43696 Q8IZN7 RGD:1559883 DEFB107B +HGNC:29966 DEFB108B defensin beta 108B protein-coding gene gene with protein product Approved 11q13.4 11q13.4 defensin, beta 108B Defensins, beta 503 2005-02-28 2015-11-18 2015-11-18 245911 ENSG00000184276 OTTHUMG00000167533 uc010rqr.2 AF529416 NM_001002035 CCDS31631 Q8NET1 DEFB108B +HGNC:18089 DEFB108P1 defensin beta 108 pseudogene 1 pseudogene pseudogene Approved 8p23.1 08p23.1 "DEFB-8|DEFB108A" DEFB108 "defensin, beta 108|defensin, beta 108, pseudogene 1" Defensins, beta 503 2002-05-09 2005-03-03 2015-11-18 2015-11-18 503694 ENSG00000229907 OTTHUMG00000165402 NG_005426 A8MXU0 11854508 +HGNC:30847 DEFB108P2 defensin beta 108 pseudogene 2 pseudogene pseudogene Approved 8p23.1 08p23.1 defensin, beta 108, pseudogene 2 Defensins, beta 503 2005-02-28 2015-11-18 2015-11-18 503837 ENSG00000215371 OTTHUMG00000143856 NG_007389.1 A8MXU0 +HGNC:26227 DEFB108P3 defensin beta 108 pseudogene 3 pseudogene pseudogene Approved 8p23.1 08p23.1 defensin, beta 108, pseudogene 3 Defensins, beta 503 2005-02-28 2015-11-18 2015-11-18 504185 ENSG00000255544 OTTHUMG00000165316 NG_007390.1 +HGNC:30174 DEFB108P4 defensin beta 108 pseudogene 4 pseudogene pseudogene Approved 8p23.1 08p23.1 defensin, beta 108, pseudogene 4 Defensins, beta 503 2005-02-28 2015-11-18 2015-11-18 503840 ENSG00000254623 OTTHUMG00000165456 NG_007391.1 +HGNC:18090 DEFB109P1 defensin beta 109 pseudogene 1 pseudogene pseudogene Approved 8p23.1 08p23.1 "DEFB-9|DEFB109A" DEFB109 "defensin, beta 109|defensin, beta 109, pseudogene 1" Defensins, beta 503 2002-05-09 2005-03-03 2015-11-18 2015-11-18 245912 ENSG00000242296 OTTHUMG00000158671 NR_024044 Q30KR1 11854508 +HGNC:33469 DEFB109P1B defensin beta 109 pseudogene 1B pseudogene pseudogene Approved 8p23.1 08p23.1 defensin, beta 109, pseudogene 1B Defensins, beta 503 2009-04-24 2015-11-18 2015-11-18 641517 ENSG00000206034 OTTHUMG00000149982 XR_001756298 Q30KR1 RGD:1560445 +HGNC:30592 DEFB109P2 defensin beta 109 pseudogene 2 pseudogene pseudogene Approved 8p23.1 08p23.1 defensin, beta 109, pseudogene 2 Defensins, beta 503 2005-02-28 2015-11-18 2015-11-18 503839 NG_023401 +HGNC:30838 DEFB109P3 defensin beta 109 pseudogene 3 pseudogene pseudogene Approved 8p23.1 08p23.1 defensin, beta 109, pseudogene 3 Defensins, beta 503 2005-02-28 2015-11-18 2015-11-18 503838 ENSG00000254866 OTTHUMG00000165296 NG_028121 PGOHUM00000249237 +HGNC:18091 DEFB110 defensin beta 110 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "DEFB-10|DEFB-11|DEFB111" "defensin, beta 110 locus|defensin, beta 110" Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245913 ENSG00000203970 OTTHUMG00000160208 uc003pac.3 "DQ012014|BC148541" NM_001037728 "CCDS43473|CCDS34475" Q30KQ9 "11854508|16033865" MGI:1924923 RGD:1565718 DEFB110 +HGNC:18092 DEFB111 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:18093 DEFB112 defensin beta 112 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 DEFB-12 defensin, beta 112 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245915 ENSG00000180872 OTTHUMG00000160215 uc011dws.2 DQ012016 NM_001037498 CCDS34476 Q30KQ8 "11854508|16033865" DEFB112 +HGNC:18094 DEFB113 defensin beta 113 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 DEFB-13 defensin, beta 113 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245927 ENSG00000214642 OTTHUMG00000160210 uc011dwq.2 DQ012017 NM_001037729 CCDS43472 Q30KQ7 "11854508|16033865" MGI:3648148 RGD:1559758 DEFB113 +HGNC:18095 DEFB114 defensin beta 114 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 DEFB-14 defensin, beta 114 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245928 ENSG00000177684 OTTHUMG00000160209 uc011dwp.3 DQ012018 NM_001037499 CCDS34474 Q30KQ6 "11854508|16033865" DEFB114 615243 +HGNC:18096 DEFB115 defensin beta 115 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 DEFB-15 defensin, beta 115 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245929 ENSG00000215547 OTTHUMG00000159284 uc002wvp.1 DQ012019 NM_001037730 CCDS42859 Q30KQ5 "11854508|16033865" MGI:3650536 RGD:1565792 DEFB115 +HGNC:18097 DEFB116 defensin beta 116 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 DEFB-16 defensin, beta 16 defensin, beta 116 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245930 ENSG00000215545 OTTHUMG00000159285 uc010ztm.2 DQ012020 NM_001037731 CCDS42860 Q30KQ4 "11854508|16033865" MGI:1922650 RGD:1564030 DEFB116 +HGNC:18098 DEFB117 defensin beta 117 (pseudogene) pseudogene pseudogene Approved 20q11.21 20q11.21 DEFB-17 defensin, beta 17 "defensin, beta 117|defensin, beta 117 (pseudogene)" Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245931 ENSG00000212717 OTTHUMG00000184006 DQ012021 NG_032981 "11854508|16033865" DEFB117 +HGNC:16196 DEFB118 defensin beta 118 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "dJ1018D12.3|DEFB-18|ESC42" C20orf63 "chromosome 20 open reading frame 63|defensin, beta 118" Defensins, beta 503 2001-07-17 2002-05-10 2015-11-18 2015-11-18 117285 ENSG00000131068 OTTHUMG00000032161 uc002wvr.4 AF347073 NM_054112 CCDS13177 Q96PH6 "11564719|15033915" MGI:2684967 RGD:1562393 DEFB118 607650 +HGNC:18099 DEFB119 defensin beta 119 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "DEFB-19|DEFB-20" DEFB120 "defensin, beta 120|defensin, beta 119" Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245932 ENSG00000180483 OTTHUMG00000032172 uc002wvt.5 AA939044 NM_153289 "CCDS13178|CCDS33455" Q8N690 11854508 MGI:2385955 RGD:1559541 DEFB119 615997 +HGNC:18101 DEFB121 defensin beta 121 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 DEFB-21 defensin, beta 21 defensin, beta 121 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245934 ENSG00000204548 OTTHUMG00000032171 uc002wvv.3 AI476463 NM_001011878 CCDS33456 Q5J5C9 11854508 DEFB121 616075 +HGNC:18102 DEFB122 defensin beta 122 (pseudogene) pseudogene pseudogene Approved 20q11.21 20q11.21 "DEFB-22|DEFB122P" "defensin, beta 122|defensin, beta 122 (pseudogene)" Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245935 ENSG00000204547 OTTHUMG00000032169 AI989655 NR_045677 "11854508|15772680" 616077 +HGNC:18103 DEFB123 defensin beta 123 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 DEFB-23 beta defensin 23 defensin, beta 123 Defensins, beta 503 2002-05-09 2015-11-18 2016-10-05 245936 ENSG00000180424 OTTHUMG00000032170 uc002wvy.4 AA933749 NM_153324 CCDS13180 Q8N688 11854508 MGI:2385956 RGD:1564902 DEFB123 616076 +HGNC:18104 DEFB124 defensin beta 124 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 DEFB-24 defensin, beta 24 defensin, beta 124 Defensins, beta 503 2002-05-09 2015-11-18 2016-10-05 245937 ENSG00000180383 OTTHUMG00000159287 uc002wvz.1 DQ119827 NM_001037500 CCDS33457 Q8NES8 "11854508|16033865" MGI:3651158 RGD:1564765 DEFB124 +HGNC:18105 DEFB125 defensin beta 125 protein-coding gene gene with protein product Approved 20p13 20p13 DEFB-25 beta defensin 25 defensin, beta 125 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245938 ENSG00000178591 OTTHUMG00000031614 uc002wcw.4 AA935636 NM_153325 CCDS12989 Q8N687 11854508 MGI:3643488 RGD:1564413 DEFB125 +HGNC:15900 DEFB126 defensin beta 126 protein-coding gene gene with protein product Approved 20p13 20p13 "bA530N10.1|DEFB-26" C20orf8 "chromosome 20 open reading frame 8|defensin, beta 126" Defensins, beta 503 2001-06-21 2002-05-10 2015-11-18 2015-11-18 81623 ENSG00000125788 OTTHUMG00000031616 uc002wcx.5 NM_030931 CCDS12990 Q9BYW3 11854508 MGI:3045368 RGD:708352 DEFB126 +HGNC:16206 DEFB127 defensin beta 127 protein-coding gene gene with protein product Approved 20p13 20p13 "bA530N10.2|DEF-27" C20orf73 "chromosome 20 open reading frame 73|defensin, beta 127" Defensins, beta 503 2001-07-17 2002-05-10 2015-11-18 2015-11-18 140850 ENSG00000088782 OTTHUMG00000031617 uc002wcy.2 AY358796 NM_139074 CCDS12991 Q9H1M4 11854508 DEFB127 +HGNC:18106 DEFB128 defensin beta 128 protein-coding gene gene with protein product Approved 20p13 20p13 DEFB-28 defensin, beta 28 defensin, beta 128 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245939 ENSG00000185982 OTTHUMG00000043057 uc002wcz.2 AF525930 NM_001037732 CCDS33430 Q7Z7B8 "11854508|16033865" MGI:2442320 RGD:1565177 DEFB128 +HGNC:16218 DEFB129 defensin beta 129 protein-coding gene gene with protein product Approved 20p13 20p13 "bA530N10.3|DEFB-29" C20orf87 "chromosome 20 open reading frame 87|defensin, beta 129" Defensins, beta 503 2001-07-17 2002-05-10 2015-11-18 2015-11-18 140881 ENSG00000125903 OTTHUMG00000031618 uc002wda.3 AY358186 NM_080831 CCDS12992 Q9H1M3 11854508 MGI:3644405 RGD:1560097 DEFB129 +HGNC:18107 DEFB130 defensin beta 130 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "DEFB-30|DEFB30" defensin, beta 130 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 245940 ENSG00000232948 OTTHUMG00000158742 uc003wvn.1 DQ012022 NM_001037804 CCDS43714 Q30KQ2 "11854508|16033865" MGI:3644478 RGD:1562459 DEFB130 +HGNC:18108 DEFB131 defensin beta 131 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 DEFB-31 defensin, beta 131 Defensins, beta 503 2002-05-09 2015-11-18 2015-11-18 644414 ENSG00000186146 OTTHUMG00000160187 uc011bwt.2 AF529414 NM_001040448 CCDS43213 P59861 "11854508|16033865|12600824" MGI:3647180 RGD:1566384 DEFB131 +HGNC:33806 DEFB132 defensin beta 132 protein-coding gene gene with protein product Approved 20p13 20p13 "RP5-1103G7.6|DEFB32" defensin, beta 132 Defensins, beta 503 2008-04-24 2015-11-18 2015-11-18 400830 ENSG00000186458 OTTHUMG00000043061 uc002wdb.4 AF525932 NM_207469 CCDS12993 Q7Z7B7 18416833 DEFB132 +HGNC:18109 DEFB132P entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-04-24 +HGNC:31331 DEFB133 defensin beta 133 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 defensin, beta 133 Defensins, beta 503 2004-03-02 2015-11-18 2015-11-18 403339 ENSG00000214643 OTTHUMG00000187384 uc063ozl.1 NM_001166478 Q30KQ1 RGD:1560245 DEFB133 +HGNC:32399 DEFB134 defensin beta 134 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 defensin, beta 134 Defensins, beta 503 2008-11-28 2015-11-18 2015-11-18 613211 ENSG00000205882 OTTHUMG00000158718 uc011kxn.3 "AY621331|DQ012024" NM_001033019 CCDS34847 Q4QY38 16033865 DEFB134 +HGNC:32400 DEFB135 defensin beta 135 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 defensin, beta 135 Defensins, beta 503 2009-05-27 2015-11-18 2015-11-18 613209 ENSG00000205883 OTTHUMG00000158719 uc003wuw.1 DQ012025 NM_001033017 CCDS43710 Q30KP9 16033865 MGI:1920920 RGD:1559641 DEFB135 +HGNC:34433 DEFB136 defensin beta 136 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 DEFB137 defensin, beta 136 Defensins, beta 503 2009-05-27 2015-11-18 2015-11-18 613210 ENSG00000205884 OTTHUMG00000158720 uc011kxm.2 DQ012026 NM_001033018 CCDS43709 Q30KP8 16033865 MGI:3033850 RGD:1562179 DEFB136 +HGNC:18339 DEFT1P defensin, theta 1 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 retrocyclin "DEFQ1|DEFT1" defensin, theta 1 2002-06-11 2005-03-30 2014-11-18 170949 ENSG00000215378 OTTHUMG00000149997 AF355799 NG_005042 "11854483|15588320|15019196" +HGNC:33599 DEFT1P2 defensin, theta 1 pseudogene 2 pseudogene pseudogene Approved 8p23.1 08p23.1 2009-08-12 2014-11-18 100287083 ENSG00000232039 OTTHUMG00000150570 NR_036687 "15944200|17214878" +HGNC:30474 DEFT2P entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-22 +HGNC:17250 DEFT3P entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-22 +HGNC:26298 DEFT4P entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-22 +HGNC:17248 DEFT5P entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-22 +HGNC:26603 DEFT6P entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-22 +HGNC:13709 DEGS1 delta 4-desaturase, sphingolipid 1 protein-coding gene gene with protein product Approved 1q42.11 01q42.11 "MLD|Des-1|DES1|FADS7|DEGS-1" "sphingolipid delta(4)-desaturase 1|dihydroceramide desaturase 1" degenerative spermatocyte homolog 1, lipid desaturase (Drosophila) Fatty acid desaturases 553 2000-11-09 2004-12-14 2016-06-21 2016-06-21 8560 ENSG00000143753 OTTHUMG00000037496 uc001hoj.4 AF002668 NM_001321541 CCDS1540 O15121 "9188692|20105137" MGI:1097711 RGD:70917 DEGS1 615843 objectId:2484 1.14.19.17 +HGNC:20113 DEGS2 delta 4-desaturase, sphingolipid 2 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 "DES2|FADS8" "sphingolipid delta(4)-desaturase 2|dihydroceramide desaturase 2" C14orf66 "chromosome 14 open reading frame 66|degenerative spermatocyte homolog 2, lipid desaturase (Drosophila)" Fatty acid desaturases 553 2002-12-18 2004-12-14 2016-06-21 2016-06-21 123099 ENSG00000168350 OTTHUMG00000171537 uc001ygx.3 NM_206918 CCDS9956 Q6QHC5 MGI:1917309 RGD:1305023 DEGS2 610862 objectId:2485 +HGNC:2768 DEK DEK proto-oncogene protein-coding gene gene with protein product Approved 6p22.3 06p22.3 D6S231E "DEK oncogene (DNA binding)|DEK oncogene" 2000-02-21 2014-06-25 2016-10-05 7913 ENSG00000124795 OTTHUMG00000014319 uc003ncr.2 X64229 XM_017011273 "CCDS34344|CCDS47382" P35659 1549122 MGI:1926209 RGD:1303246 DEK 125264 168426 +HGNC:29324 DENND1A DENN domain containing 1A protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "FLJ21129|FAM31A" connecdenn 1 KIAA1608 "KIAA1608|DENN/MADD domain containing 1A" DENN/MADD domain containing 504 2004-01-29 2005-08-17 2016-02-12 2016-10-05 57706 ENSG00000119522 OTTHUMG00000020643 uc004bnz.2 AB046828 NM_024820 "CCDS35133|CCDS35134" Q8TEH3 10997877 MGI:2442794 RGD:1307927 DENND1A 613633 +HGNC:28404 DENND1B DENN domain containing 1B protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "MGC27044|FLJ20054" connecdenn 2 "FAM31B|C1orf218" "family with sequence similarity 31, member B|chromosome 1 open reading frame 218|DENN/MADD domain containing 1B" DENN/MADD domain containing 504 2004-01-29 2005-08-17 2016-02-12 2016-02-12 163486 ENSG00000213047 OTTHUMG00000035653 uc001guf.4 BC016588 NM_144977 "CCDS41452|CCDS72996|CCDS72997" Q6P3S1 12477932 MGI:2447812 RGD:1308441 DENND1B 613292 +HGNC:26225 DENND1C DENN domain containing 1C protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ22757 connecdenn 3 FAM31C "family with sequence similarity 31, member C|DENN/MADD domain containing 1C" DENN/MADD domain containing 504 2004-01-29 2005-08-17 2016-02-12 2016-02-12 79958 ENSG00000205744 OTTHUMG00000180853 uc002mfe.4 AL713770 NM_024898 "CCDS45938|CCDS77225" Q8IV53 12477932 MGI:1918035 RGD:1590869 DENND1C 613634 +HGNC:22212 DENND2A DENN domain containing 2A protein-coding gene gene with protein product Approved 7q34 07q34 FAM31D KIAA1277 "KIAA1277|DENN/MADD domain containing 2A" DENN/MADD domain containing 504 2004-01-29 2005-08-17 2016-02-12 2016-02-12 27147 ENSG00000146966 OTTHUMG00000157411 uc003vvw.3 AB033103 NM_015689 "CCDS43659|CCDS83233" Q9ULE3 MGI:2444961 RGD:1306142 DENND2A +HGNC:24748 DENND2C DENN domain containing 2C protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "FLJ37099|DKFZp686G0351|DKFZp779P1149|dJ1156J9.1|RP5-1156J9.1" DENN/MADD domain containing 2C DENN/MADD domain containing 504 2005-08-17 2016-02-12 2016-10-05 163259 ENSG00000175984 OTTHUMG00000011893 uc001efc.2 NM_198459 "CCDS875|CCDS58018" Q68D51 MGI:3036254 RGD:1308197 DENND2C +HGNC:26192 DENND2D DENN domain containing 2D protein-coding gene gene with protein product Approved 1p13.3-p13.2 01p13.3-p13.2 "FLJ22457|RP5-1180E21.2" DENN/MADD domain containing 2D DENN/MADD domain containing 504 2005-08-17 2016-02-12 2016-10-11 79961 ENSG00000162777 OTTHUMG00000012356 uc001eak.3 NM_024901 "CCDS831|CCDS60219" Q9H6A0 12477932 MGI:2181193 RGD:1305120 DENND2D 615111 +HGNC:29134 DENND3 DENN domain containing 3 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 KIAA0870 DENN/MADD domain containing 3 "WD repeat domain containing|DENN/MADD domain containing" "362|504" 2005-08-17 2016-02-12 2016-02-12 22898 ENSG00000105339 OTTHUMG00000164775 uc003yvy.4 AB020677 NM_014957 CCDS34947 A2RUS2 10048485 MGI:2146009 RGD:1311559 DENND3 +HGNC:24321 DENND4A DENN domain containing 4A protein-coding gene gene with protein product Approved 15q22.31 15q22.31 IRLB MYCPBP "c-myc promoter binding protein|DENN/MADD domain containing 4A" DENN/MADD domain containing 504 2004-07-02 2006-01-27 2016-02-12 2016-02-12 10260 ENSG00000174485 OTTHUMG00000172635 uc002aph.4 AF534403 NM_005848 "CCDS45285|CCDS53949" Q7Z401 "8056341|12906859" MGI:2142979 RGD:1562639 DENND4A 600382 +HGNC:29044 DENND4B DENN domain containing 4B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 KIAA0476 "KIAA0476|DENN/MADD domain containing 4B" DENN/MADD domain containing 504 2004-04-05 2006-01-27 2016-02-12 2016-02-12 9909 ENSG00000198837 OTTHUMG00000037157 uc001fdd.2 AB007945 XM_375806 CCDS44228 O75064 "9455484|12906859" MGI:2446201 RGD:1560320 DENND4B +HGNC:26079 DENND4C DENN domain containing 4C protein-coding gene gene with protein product Approved 9p22.1 09p22.1 "FLJ20686|bA513M16.3|RAB10GEF" "C9orf55B|C9orf55" "chromosome 9 open reading frame 55B|chromosome 9 open reading frame 55|DENN/MADD domain containing 4C" DENN/MADD domain containing 504 2004-01-05 2006-01-27 2016-02-12 2016-06-07 55667 ENSG00000137145 OTTHUMG00000019627 uc031tcw.2 AK000693 NM_017925 "CCDS6491|CCDS83349" Q5VZ89 "12906859|21454697" MGI:1914769 RGD:1308489 DENND4C +HGNC:19344 DENND5A DENN domain containing 5A protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "KIAA1091|FLJ22354|FLJ33829|FLJ43455" RAB6IP1 "RAB6 interacting protein 1|DENN/MADD domain containing 5A" DENN/MADD domain containing 504 2002-10-08 2008-08-14 2016-02-12 2016-10-05 23258 ENSG00000184014 OTTHUMG00000165716 uc001mhl.5 AB029014 NM_015213 "CCDS31423|CCDS58119" Q6IQ26 10470851 MGI:1201681 RGD:1306759 DENND5A +HGNC:28338 DENND5B DENN domain containing 5B protein-coding gene gene with protein product Approved 12p11.21 12p11.21 MGC24039 DENN/MADD domain containing 5B DENN/MADD domain containing 504 2008-08-14 2016-02-12 2016-02-12 160518 ENSG00000170456 OTTHUMG00000169034 uc001rki.2 AF086301 NM_144973 "CCDS44857|CCDS76542" Q6ZUT9 12477932 MGI:2444273 RGD:2318606 DENND5B +HGNC:42517 DENND5B-AS1 DENND5B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p11.21 12p11.21 DENND5B antisense RNA 1 (non-protein coding) 2011-08-03 2012-08-15 2014-11-19 100874249 ENSG00000255867 OTTHUMG00000169083 uc058mmp.1 NR_046909 +HGNC:26635 DENND6A DENN domain containing 6A protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "FLJ34969|AFI1A" FAM116A "family with sequence similarity 116, member A|DENN/MADD domain containing 6A" DENN/MADD domain containing 504 2006-04-07 2012-10-03 2016-02-12 2016-02-12 201627 ENSG00000174839 OTTHUMG00000158639 uc003dja.4 AK074156 NM_152678 CCDS33773 Q8IWF6 21330364 MGI:2442980 RGD:1306064 +HGNC:41152 DENND6A-AS1 DENND6A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.3 03p14.3 2015-03-11 2015-03-11 106144528 ENSG00000239801 OTTHUMG00000158638 AW183704 +HGNC:32690 DENND6B DENN domain containing 6B protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "MGC33692|AFI1B" FAM116B "family with sequence similarity 116, member B|DENN/MADD domain containing 6B" DENN/MADD domain containing 504 2006-04-07 2012-10-03 2016-02-12 2016-02-12 414918 ENSG00000205593 OTTHUMG00000150210 uc011arv.2 AK054743 NM_001001794 CCDS46732 Q8NEG7 21330364 MGI:1916690 RGD:1308012 +HGNC:2769 DENR density regulated re-initiation and release factor protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "DRP|DRP1|SMAP-3" density-regulated protein 1999-06-17 2016-07-04 2016-07-04 8562 ENSG00000139726 OTTHUMG00000168844 uc001uda.4 AF038554 NM_003677 CCDS45003 O43583 "9628587|16982740|20713520|27239039" MGI:1915434 RGD:1584200 DENR 604550 +HGNC:22949 DEPDC1 DEP domain containing 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "DEP.8|FLJ20354|SDP35|DEPDC1A" 2004-02-23 2016-10-05 55635 ENSG00000024526 OTTHUMG00000009212 uc001del.5 AK000361 NM_017779 "CCDS644|CCDS44159" Q5TB30 MGI:1923381 RGD:1306987 DEPDC1 612002 +HGNC:50592 DEPDC1-AS1 DEPDC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p31.3-p31.2 01p31.3-p31.2 2014-05-22 2014-05-22 2014-05-22 2016-10-11 101927220 ENSG00000234264 OTTHUMG00000009207 NR_110671 +HGNC:24902 DEPDC1B DEP domain containing 1B protein-coding gene gene with protein product Approved 5q12.1 05q12.1 "XTP1|BRCC3" breast cancer cell 3 2004-06-04 2016-10-05 55789 ENSG00000035499 OTTHUMG00000097083 uc003jsh.4 AF303178 NM_018369 "CCDS3977|CCDS47214" Q8WUY9 25458010 MGI:2145425 RGD:1305799 DEPDC1B 616073 +HGNC:31125 DEPDC1P1 DEP domain containing 1 pseudogene 1 pseudogene pseudogene Approved 15q13.3 15q13.3 2008-01-31 2008-01-31 730888 XR_015306 +HGNC:33975 DEPDC1P2 DEP domain containing 1 pseudogene 2 pseudogene pseudogene Approved 9q31.2 09q31.2 2008-01-31 2008-01-31 100126446 NG_007042 +HGNC:22952 DEPDC4 DEP domain containing 4 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "DEP.4|FLJ33505" 2004-02-23 2016-10-05 120863 ENSG00000166153 OTTHUMG00000170318 uc001thi.4 AK090824 NM_152317 CCDS9075 Q8N2C3 12477932 DEPDC4 +HGNC:18423 DEPDC5 DEP domain containing 5 protein-coding gene gene with protein product Approved 22q12.2-q12.3 22q12.2-q12.3 "KIAA0645|DEP.5" 2004-05-05 2016-10-11 9681 ENSG00000100150 OTTHUMG00000030926 uc003alt.4 AB014545 NM_014662 "CCDS43006|CCDS43007|CCDS46692|CCDS56229|CCDS74849" O75140 "23542697|23542701" MGI:2141101 RGD:1311535 DEPDC5 614191 353372 +HGNC:29899 DEPDC7 DEP domain containing 7 protein-coding gene gene with protein product Approved 11p13 11p13 2006-03-24 2014-11-18 91614 ENSG00000121690 OTTHUMG00000166242 uc001mub.3 NM_139160 "CCDS41632|CCDS41633" Q96QD5 10568747 MGI:2139258 RGD:1309720 DEPDC7 612294 +HGNC:22953 DEPTOR DEP domain containing MTOR-interacting protein protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "DEP.6|FLJ12428" DEPDC6 DEP domain containing 6 PDZ domain containing 1220 2004-02-23 2010-12-08 2010-12-08 2011-12-13 64798 ENSG00000155792 OTTHUMG00000165052 uc003yow.6 NM_022783 "CCDS6331|CCDS64960" Q8TB45 19446321 MGI:2146322 RGD:1561030 DEPTOR 612974 +HGNC:24269 DERA deoxyribose-phosphate aldolase protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "CGI-26|DEOC" 2-deoxyribose-5-phosphate aldolase homolog (C. elegans) 2004-12-07 2016-03-08 2016-03-08 51071 ENSG00000023697 OTTHUMG00000165537 uc001rde.4 AF132960 NM_015954 "CCDS44838|CCDS73451" Q9Y315 "12546782|25229427" MGI:1913762 RGD:1589836 DERA 4.1.2.4 +HGNC:28454 DERL1 derlin 1 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "MGC3067|PRO2577|FLJ13784|DER1|DER-1|derlin-1" Der1-like domain family, member 1 Rhomboid family 926 2004-11-02 2012-02-01 2012-02-01 79139 ENSG00000136986 OTTHUMG00000165080 uc003ypl.3 BC002457 NM_024295 "CCDS6337|CCDS47915|CCDS83319" Q9BUN8 "12975309|15215855" MGI:1915069 RGD:1311835 DERL1 608813 +HGNC:17943 DERL2 derlin 2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "F-LAN-1|FLANa|F-LANa|CGI-101|derlin-2" Der1-like domain family, member 2 Rhomboid family 926 2004-11-02 2012-02-01 2014-11-19 51009 ENSG00000072849 OTTHUMG00000102040 uc002gcc.2 BC010890 NM_016041 "CCDS11073|CCDS76927" Q9GZP9 "10810093|11500051" MGI:2151483 RGD:6496100 DERL2 610304 +HGNC:14236 DERL3 derlin 3 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "FLJ43842|MGC71803|derlin-3|IZP6" C22orf14 "chromosome 22 open reading frame 14|Der1-like domain family, member 3" Rhomboid family 926 2001-02-14 2004-11-02 2012-02-01 2014-11-19 91319 ENSG00000099958 OTTHUMG00000150743 uc002zyh.4 AB049213 NM_198440 "CCDS33615|CCDS42986|CCDS46672" Q96Q80 15215855 MGI:1917627 RGD:1597373 DERL3 610305 +HGNC:2770 DES desmin protein-coding gene gene with protein product Approved 2q35 02q35 "CMD1I|CSM1|CSM2" intermediate filament protein Intermediate filaments Type III 610 2001-06-22 2016-10-12 1674 ENSG00000175084 OTTHUMG00000058924 uc002vll.3 AF521879 NM_001927 CCDS33383 P17661 "2673923|9736733" MGI:94885 RGD:620686 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=DES|LRG_380|http://www.lrg-sequence.org/LRG/LRG_380" DES 125660 121053 HGNC:2770 +HGNC:24577 DESI1 desumoylating isopeptidase 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 D15Wsu75e "FAM152B|PPPDE2" "family with sequence similarity 152, member B|PPPDE peptidase domain containing 2" Desumoylating isopeptidases 986 2008-01-09 2012-05-16 2012-05-16 2014-11-19 27351 ENSG00000100418 OTTHUMG00000044632 uc003bam.3 AF038183 NM_015704 CCDS33652 Q6ICB0 "8619474|9110174|22370726" MGI:106313 RGD:1305776 614637 +HGNC:24264 DESI2 desumoylating isopeptidase 2 protein-coding gene gene with protein product Approved 1q44 01q44 "CGI-146|FLJ21998|PNAS-4" "C1orf121|FAM152A|PPPDE1" "chromosome 1 open reading frame 121|family with sequence similarity 152, member A|PPPDE peptidase domain containing 1" Desumoylating isopeptidases 986 2005-06-21 2012-05-16 2012-05-16 2015-06-12 51029 ENSG00000121644 OTTHUMG00000040398 uc001iao.4 AK025651 NM_016076 "CCDS1626|CCDS73055" Q9BSY9 "10810093|22370726" MGI:1926075 RGD:1359392 614638 +HGNC:25477 DET1 de-etiolated homolog 1 (Arabidopsis) protein-coding gene gene with protein product Approved 15q26.1 15q26.1 FLJ10103 2004-12-13 2016-01-14 55070 ENSG00000140543 OTTHUMG00000171851 uc002bmr.3 BC001242 NM_017996 "CCDS45343|CCDS45344" Q7L5Y6 14739464 MGI:1923625 RGD:1309793 DET1 608727 +HGNC:26344 DEUP1 deuterosome assembly protein 1 protein-coding gene gene with protein product Approved 11q21 11q21 FLJ25393 CCDC67 coiled-coil domain containing 67 2006-02-06 2016-06-29 2016-06-29 2016-06-29 159989 ENSG00000165325 OTTHUMG00000167441 uc001pdq.5 AK058122 NM_181645 CCDS44707 Q05D60 24240477 MGI:2443026 RGD:1306632 617148 +HGNC:13267 DEXI Dexi homolog protein-coding gene gene with protein product Approved 16p13.13 16p13.13 MYLE dexamethasone-induced transcript Dexi homolog (mouse) 2009-08-13 2016-03-31 2016-03-31 28955 ENSG00000182108 OTTHUMG00000129785 uc002dal.4 AF108145 NM_014015 CCDS10545 O95424 "11306815|11472984" MGI:1926236 RGD:1564938 DEXI +HGNC:2772 DFFA DNA fragmentation factor subunit alpha protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "DFF-45|DFF45|ICAD|DFF1" DNA fragmentation factor, 45 kD, alpha subunit "DNA fragmentation factor, 45 kD, alpha polypeptide|DNA fragmentation factor, 45kDa, alpha polypeptide" 1997-10-27 2016-02-03 2016-10-05 1676 ENSG00000160049 OTTHUMG00000001909 uc001arj.4 AF087573 NM_004401 "CCDS118|CCDS119" O00273 "9605855|9108473" MGI:1196227 RGD:620334 DFFA 601882 +HGNC:2773 DFFB DNA fragmentation factor subunit beta protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "CAD|CPAN|DFF-40|DFF40" caspase-activated DNase DNA fragmentation factor, 40kDa, beta polypeptide (caspase-activated DNase) 1997-10-27 2016-02-03 2016-10-05 1677 ENSG00000169598 OTTHUMG00000003525 uc001alc.5 NM_001282669 "CCDS52|CCDS72693" O76075 "9108473|9560346" MGI:1196287 RGD:620335 DFFB 601883 +HGNC:49815 DFFBP1 DNA fragmentation factor subunit beta pseudogene 1 pseudogene pseudogene Approved 9p21.1 09p21.1 DNA fragmentation factor, 40kDa, beta polypeptide pseudogene 1 2014-03-06 2016-02-03 2016-02-03 100422581 ENSG00000232303 OTTHUMG00000019745 NG_023797 PGOHUM00000236007 +HGNC:2778 DFN5 deafness, X-linked 5 phenotype phenotype only Approved reserved reserved 1995-11-28 2007-06-11 1681 +HGNC:2780 DFN7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:2781 DFN8 deafness, X-linked 8 phenotype phenotype only Approved reserved reserved 1996-06-21 2005-02-09 1684 +HGNC:2810 DFNA5 DFNA5, deafness associated tumor suppressor protein-coding gene gene with protein product Approved 7p15.3 07p15.3 ICERE-1 deafness, autosomal dominant 5 1995-09-11 2016-03-18 2016-10-05 1687 ENSG00000105928 OTTHUMG00000023237 uc003sxa.2 AF007790 NM_004403 "CCDS5389|CCDS47563" O60443 "8589696|9450185|26236191" MGI:1889850 RGD:727871 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org DFNA5 608798 121056 +HGNC:2812 DFNA7 deafness, autosomal dominant 7 phenotype phenotype only Approved 1q21-q23 01q21-q23 1995-10-11 1996-08-08 1689 8842739 601412 +HGNC:2789 DFNA16 deafness, autosomal dominant 16 phenotype phenotype only Approved 2q24 02q24 1998-01-08 1999-12-08 1694 10364526 603964 +HGNC:13268 DFNA18 deafness, autosomal dominant 18 phenotype phenotype only Approved 3q22 03q22 2001-11-23 2011-02-11 85507 11313754 606012 +HGNC:2791 DFNA19 deafness, autosomal dominant 19 phenotype phenotype only Approved 10 10 1998-07-15 2011-02-24 1696 +HGNC:2794 DFNA21 deafness, autosomal dominant 21 phenotype phenotype only Approved 6p24.1-p22.3 06p24.1-p22.3 1999-01-29 2011-02-11 192644 "10764236|10890148|16007628" 607017 +HGNC:2796 DFNA24 deafness, autosomal dominant 24 phenotype phenotype only Approved 4q35-qter 04q35-qter 1999-06-02 2011-02-11 23723 10739769 606282 +HGNC:2798 DFNA27 deafness, autosomal dominant 27 phenotype phenotype only Approved 4q12-q13.1 04q12-q13.1 1999-06-24 2011-02-11 23722 18279434 612431 +HGNC:2800 DFNA29 deafness, autosomal dominant 29 phenotype phenotype only Approved reserved reserved 1999-07-06 2011-02-25 23720 +HGNC:2802 DFNA30 deafness, autosomal dominant 30 phenotype phenotype only Approved 15q25-q26 15q25-q26 1999-07-06 2011-02-11 23719 11571554 606451 +HGNC:2803 DFNA31 deafness, autosomal dominant 31 phenotype phenotype only Approved 6p21 06p21 1999-08-27 2011-02-11 347737 14729819 608645 +HGNC:2804 DFNA32 deafness, autosomal dominant 32 phenotype phenotype only Approved 11p15 11p15 1999-12-14 2011-02-17 94138 +HGNC:2805 DFNA33 deafness, autosomal dominant 33 phenotype phenotype only Approved 13q34-qter 13q34-qter 2000-02-11 2009-09-11 29779 19183916 614211 +HGNC:2806 DFNA34 deafness, autosomal dominant 34 phenotype phenotype only Approved 1q44 01q44 2000-05-16 2011-02-17 94139 +HGNC:2807 DFNA35 deafness, autosomal dominant 35 phenotype phenotype only Approved reserved reserved 2000-05-25 2011-02-25 94140 +HGNC:18545 DFNA37 deafness, autosomal dominant 37 phenotype phenotype only Approved 1p21 01p21 2002-04-23 2011-02-25 317718 +HGNC:14070 DFNA40 deafness, autosomal dominant 40 phenotype phenotype only Approved 16p12 16p12 2000-11-28 2011-02-11 63945 +HGNC:20791 DFNA42 deafness, autosomal dominant 42 phenotype phenotype only Approved 5q31.1-q32 05q31.1-q32 DFNA52 deafness, autosomal dominant 52 2003-04-07 2005-03-17 2005-03-11 2011-02-18 347713 12522684 +HGNC:17243 DFNA43 deafness, autosomal dominant 43 phenotype phenotype only Approved 2p12-p11.1 02p12-p11.1 2002-04-26 2011-02-11 192676 12676899 608394 +HGNC:18691 DFNA45 deafness, autosomal dominant 45 phenotype phenotype only Approved reserved reserved 2002-06-11 2011-02-18 246287 +HGNC:18692 DFNA46 deafness, autosomal dominant 46 phenotype phenotype only Approved reserved reserved 2002-06-11 2011-02-18 246288 +HGNC:18693 DFNA47 deafness, autosomal dominant 47 phenotype phenotype only Approved 9p22-p21 09p22-p21 2002-06-11 2011-02-11 246289 12634859 608652 +HGNC:18694 DFNA48 deafness, autosomal dominant 48 phenotype phenotype only Approved 12q13-q14 12q13-q14 2002-06-11 2006-06-27 2014-09-05 "12596055|24616153" +HGNC:18820 DFNA49 deafness, autosomal dominant 49 phenotype phenotype only Approved 1q23.2-q23.3 01q23.2-q23.3 2002-12-19 2011-02-11 317664 14627674 608372 +HGNC:15821 DFNA52 deafness, autosomal dominant 52 phenotype phenotype only Approved 5q31.1-q32 05q31.1-q32 DFNA42 deafness, autosomal dominant 42 2001-11-23 2005-03-17 2005-03-11 2011-02-18 170507 18312703 607683 +HGNC:21402 DFNA53 deafness, autosomal dominant 53 phenotype phenotype only Approved 14q11-q12 14q11-q12 2003-06-26 2011-02-11 353347 15958501 609965 +HGNC:23566 DFNA54 deafness, autosomal dominant 54 phenotype phenotype only Approved 5q31 05q31 2004-09-17 2008-03-17 448962 15490091 615649 +HGNC:33123 DFNA55 deafness, autosomal dominant 55 phenotype phenotype only Approved 9p13.3.-p13.2 09p13.3.-p13.2 2010-06-30 2010-06-30 20564826 +HGNC:33491 DFNA57 deafness, autosomal dominant 57 phenotype phenotype only Approved 19p13.2 19p13.2 2007-06-18 2008-03-17 100093632 18066515 +HGNC:34029 DFNA58 deafness, autosomal dominant 58 phenotype phenotype only Approved 2p21-p12 02p21-p12 2008-03-25 2009-04-23 100359395 19159392 615654 +HGNC:35168 DFNA59 deafness, autosomal dominant 59 phenotype phenotype only Approved 11p14.2-q12.3 11p14.2-q12.3 2008-11-26 2008-12-10 100271924 19030898 612642 +HGNC:35170 DFNA60 deafness, autosomal dominant 60 phenotype phenotype only Approved 2q22.1-q24.1 02q22.1-q24.1 2008-10-14 2015-04-29 23538131 +HGNC:37076 DFNA61 deafness, autosomal dominant 61 phenotype phenotype only Approved reserved reserved 2009-05-06 2009-05-06 +HGNC:37077 DFNA62 deafness, autosomal dominant 62 phenotype phenotype only Approved reserved reserved 2009-05-07 2015-02-06 +HGNC:38878 DFNA63 deafness, autosomal dominant 63 phenotype phenotype only Approved 3q25.1-q25.2 03q25.1-q25.2 2010-09-10 2010-09-10 +HGNC:2837 DFNB5 deafness, autosomal recessive 5 phenotype phenotype only Approved 14q12 14q12 1995-09-11 1998-08-05 1697 8541854 600792 +HGNC:2819 DFNB13 deafness, autosomal recessive 13 phenotype phenotype only Approved 7q34-q36 07q34-q36 1996-06-21 2008-03-17 1705 "9781028|15355440" 603098 +HGNC:2820 DFNB14 deafness, autosomal recessive 14 phenotype phenotype only Approved 7q31 07q31 1996-06-21 1999-03-31 1706 9887371 603678 +HGNC:2823 DFNB17 deafness, autosomal recessive 17 phenotype phenotype only Approved 7q31 07q31 1997-05-22 2008-03-17 1709 "9674898|15293785" 603010 +HGNC:2825 DFNB19 deafness, autosomal recessive 19 phenotype phenotype only Approved 18p11 18p11 1997-10-16 2011-02-25 1712 +HGNC:2827 DFNB20 deafness, autosomal recessive 20 phenotype phenotype only Approved 11q25-qter 11q25-qter 1997-10-24 1999-07-26 1713 10196710 604060 +HGNC:2832 DFNB26 deafness, autosomal recessive 26 phenotype phenotype only Approved 4q31 04q31 1999-07-07 2011-02-11 23714 11101839 605428 +HGNC:2833 DFNB27 deafness, autosomal recessive 27 phenotype phenotype only Approved 2q24 02q24 1999-07-14 2011-02-11 23713 11175289 605818 +HGNC:16360 DFNB32 deafness, autosomal recessive 32 phenotype phenotype only Approved 1p22.1-p13.3 01p22.1-p13.3 2001-08-14 2011-08-03 113877 12634867 608653 +HGNC:16359 DFNB33 deafness, autosomal recessive 33 phenotype phenotype only Approved 10p11.23-q21.1 10p11.23-q21.1 2001-11-12 2008-10-14 170508 18781188 607239 +HGNC:17143 DFNB34 deafness, autosomal recessive 34 phenotype phenotype only Approved 3p22.1 03p22.1 2002-03-12 2011-02-18 245821 +HGNC:19210 DFNB38 deafness, autosomal recessive 38 phenotype phenotype only Approved 6q25.3-q27 06q25.3-q27 2002-09-18 2005-01-13 337991 12890929 608219 +HGNC:20408 DFNB40 deafness, autosomal recessive 40 phenotype phenotype only Approved 22q11.21-q12.1 22q11.21-q12.1 2003-10-13 2008-05-14 379003 14512974 608264 +HGNC:17480 DFNB43 deafness, autosomal recessive 43 phenotype phenotype only Approved 15q24.1-q25.2 15q24.1-q25.2 2004-09-30 2011-02-25 449481 +HGNC:23223 DFNB44 deafness, autosomal recessive 44 phenotype phenotype only Approved 7p14.1-q11.22 07p14.1-q11.22 2004-09-30 2004-12-23 449484 15583425 +HGNC:22400 DFNB45 deafness, autosomal recessive 45 phenotype phenotype only Approved 1q43-q44 01q43-q44 2004-09-30 2008-03-17 449483 18325041 612433 +HGNC:31085 DFNB46 deafness, autosomal recessive 46 phenotype phenotype only Approved 18p11.32-p11.31 18p11.32-p11.31 2004-09-30 2006-09-16 449488 15637723 609647 +HGNC:31086 DFNB47 deafness, autosomal recessive 47 phenotype phenotype only Approved 2p25.3-p24.2 02p25.3-p24.2 2004-09-30 2006-08-04 449489 16261342 609946 +HGNC:31380 DFNB50 deafness, autosomal recessive 50 phenotype phenotype only Approved 12q23-qter 12q23-qter 2004-03-26 2011-02-22 404542 +HGNC:24367 DFNB51 deafness, autosomal recessive 51 phenotype phenotype only Approved 11p13-p12 11p13-p12 2004-09-17 2011-02-11 448963 16158433 609941 +HGNC:24038 DFNB54 deafness, autosomal recessive 54 phenotype phenotype only Approved 1p34.2-p32.1 01p34.2-p32.1 2010-03-24 2010-03-24 +HGNC:28876 DFNB55 deafness, autosomal recessive 55 phenotype phenotype only Approved 4q12-q13.2 04q12-q13.2 2004-12-23 2008-05-15 494148 16098016 609952 +HGNC:31877 DFNB56 deafness, autosomal recessive 56 phenotype phenotype only Approved reserved reserved 2004-12-23 2011-02-22 494149 +HGNC:26774 DFNB57 deafness, autosomal recessive 57 phenotype phenotype only Approved 10q23.1-q26.11 10q23.1-q26.11 2005-08-09 2011-02-22 606523 +HGNC:18252 DFNB58 deafness, autosomal recessive 58 phenotype phenotype only Approved 2q14.2-q14.3 02q14.2-q14.3 2005-09-13 2011-02-22 619211 +HGNC:29502 DFNB59 deafness, autosomal recessive 59 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 pejvakin 2005-01-13 2016-02-22 494513 ENSG00000204311 OTTHUMG00000154425 uc002umi.5 "BC020859|BQ887979" XM_017004221 CCDS42787 Q0ZLH3 16804542 MGI:2685847 RGD:1587131 DFNB59 610219 166807 +HGNC:18300 DFNB60 deafness, autosomal recessive 60 phenotype phenotype only Approved 5q22-q31 05q22-q31 2005-02-28 2011-02-18 503842 +HGNC:29439 DFNB62 deafness, autosomal recessive 62 phenotype phenotype only Approved 12p13.2-p11.23 12p13.2-p11.23 2006-05-10 2011-02-11 692220 16650082 610143 +HGNC:28113 DFNB65 deafness, autosomal recessive 65 phenotype phenotype only Approved 20q13.2-q13.32 20q13.2-q13.32 2006-05-10 2006-05-10 692219 16596430 610248 +HGNC:32193 DFNB66 deafness, autosomal recessive 66 phenotype phenotype only Approved 6p22.3-p21.2 06p22.3-p21.2 2005-08-12 2005-12-22 606719 16244493 +HGNC:21322 DFNB68 deafness, autosomal recessive 68 phenotype phenotype only Approved 19p13.2 19p13.2 2006-08-17 2005-09-13 2005-09-13 2006-11-29 751609 16703383 +HGNC:33121 DFNB69 deafness, autosomal recessive 69 phenotype phenotype only Approved reserved reserved 2006-08-25 2007-06-15 751783 +HGNC:33172 DFNB71 deafness, autosomal recessive 71 phenotype phenotype only Approved 8p22-p21.3 08p22-p21.3 2009-05-05 2009-05-05 100302513 19229252 612789 +HGNC:33503 DFNB75 deafness, autosomal recessive 75 phenotype phenotype only Approved reserved reserved 2007-06-21 2011-02-11 100093716 +HGNC:35183 DFNB78 deafness, autosomal recessive 78 phenotype phenotype only Approved reserved reserved 2008-10-30 2009-05-08 +HGNC:35185 DFNB80 deafness, autosomal recessive 80 phenotype phenotype only Approved 2p21-p16.1 02p21-p16.1 2008-10-30 2013-07-23 23235334 +HGNC:35420 DFNB81 deafness, autosomal recessive 81 phenotype phenotype only Approved 19p13.3-p13.11 19p13.3-p13.11 2008-11-26 2011-08-03 100653390 21660509 +HGNC:37051 DFNB83 deafness, autosomal recessive 83 phenotype phenotype only Approved 9p23-p21.2 09p23-p21.2 2010-01-07 2010-01-07 100359400 19888295 613685 +HGNC:37053 DFNB85 deafness, autosomal recessive 85 phenotype phenotype only Approved 17p12-q11.2 17p12-q11.2 2010-01-07 2010-01-07 100359399 19888295 613392 +HGNC:37290 DFNB87 deafness, autosomal recessive 87 phenotype phenotype only Approved reserved reserved 2009-09-11 2011-02-11 +HGNC:37649 DFNB90 deafness, autosomal recessive 90 phenotype phenotype only Approved 7p22.1-p15.3 07p22.1-p15.3 2011-08-03 2011-08-03 21734401 +HGNC:37770 DFNB92 deafness, autosomal recessive 92 phenotype phenotype only Approved reserved reserved 2010-02-17 2010-02-17 +HGNC:38050 DFNB93 deafness, autosomal recessive 93 phenotype phenotype only Approved 11q12.2-q13.4 11q12.2-q13.4 2011-08-03 2011-08-03 21542834 +HGNC:39437 DFNB96 deafness, autosomal recessive 96 phenotype phenotype only Approved 1p36.31-p36.13 01p36.31-p36.13 2010-12-21 2011-11-29 100861440 21937999 614414 +HGNC:44650 DFNB100 deafness, autosomal recessive 100 phenotype phenotype only Approved reserved reserved 2013-09-27 2013-09-27 +HGNC:2842 DFNM1 deafness (recessive, non-syndromic) modifier 1 phenotype phenotype only Approved 1q23 01q23 2000-06-29 2015-11-18 2015-11-18 54362 11101839 605429 +HGNC:31866 DFNM2 deafness (mitochondrial) modifier 2 phenotype phenotype only Approved 8p23 08p23 2004-12-20 2004-12-20 494142 "11388757|10788333" +HGNC:2777 DFNX3 deafness, X-linked 3 phenotype phenotype only Approved Xp21.2 Xp21.2 DFN4 deafness, X-linked 4, congenital sensorineural 1994-12-08 2014-01-28 2014-01-28 2014-01-28 1680 "7942846|18005182" 300030 +HGNC:26547 DFNY1 deafness, Y-linked 1 phenotype phenotype only Approved Y Y 2006-06-27 2011-02-11 724074 15173246 400043 +HGNC:2843 DGAT1 diacylglycerol O-acyltransferase 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "ARGP1|DGAT" diacylglycerol O-acyltransferase homolog 1 (mouse) 1998-11-11 2001-11-09 2010-06-24 2014-11-19 8694 ENSG00000185000 OTTHUMG00000174606 uc003zbv.5 AF059202 NM_012079 CCDS6420 O75907 9756920 MGI:1333825 RGD:628673 DGAT1 604900 331710 objectId:2821 2.3.1.20 +HGNC:16940 DGAT2 diacylglycerol O-acyltransferase 2 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 diacylglycerol O-acyltransferase homolog 2 (mouse) Diacylglycerol O-acyltransferase 2 family 1235 2001-11-19 2010-06-24 2016-10-05 84649 ENSG00000062282 OTTHUMG00000165338 uc001oxa.4 NM_032564 "CCDS31642|CCDS58162" Q96PD7 "11481335|14970677" MGI:1915050 RGD:620329 DGAT2 606983 +HGNC:23250 DGAT2L6 diacylglycerol O-acyltransferase 2 like 6 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "DC3|FLJ25989" Diacylglycerol O-acyltransferase 2 family 1235 2006-01-31 2016-03-14 2016-03-14 347516 ENSG00000184210 OTTHUMG00000021774 uc004dxx.2 AK129500 NM_198512 CCDS14397 Q6ZPD8 15671038 MGI:3045268 RGD:1596935 DGAT2L6 300926 +HGNC:44367 DGAT2L7P diacylglycerol O-acyltransferase 2 like 7, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 Diacylglycerol O-acyltransferase 2 family 1235 2012-09-06 2016-03-14 2016-03-14 646409 ENSG00000205267 NG_033274 Q6IED9 14970677 DGAT2L7P +HGNC:2844 DGCR DiGeorge syndrome chromosome region other region Approved 22q11.21-q11.23 22q11.21-q11.23 CATCH22 2001-06-22 2012-10-02 1714 +HGNC:2845 DGCR2 DiGeorge syndrome critical region gene 2 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "KIAA0163|LAN|IDD|DGS-C|SEZ-12" integral membrane protein DGCR2 C-type lectin domain containing 1298 2000-07-28 2015-09-11 9993 ENSG00000070413 OTTHUMG00000150141 uc062bkn.1 D79985 NM_005137 "CCDS33598|CCDS54496" P98153 "7655455|8630060" MGI:892866 RGD:1310567 DGCR2 600594 +HGNC:16757 DGCR5 DiGeorge syndrome critical region gene 5 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 "NCRNA00037|LINC00037" "non-protein coding RNA 37|long intergenic non-protein coding RNA 37" 2002-04-22 2008-08-13 2016-10-05 26220 ENSG00000237517 OTTHUMG00000149977 uc002zon.3 X91348 NR_002733 8659529 +HGNC:2846 DGCR6 DiGeorge syndrome critical region gene 6 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2000-07-28 2015-08-24 8214 ENSG00000183628 OTTHUMG00000150162 uc002zoh.4 X96484 NM_005675 CCDS13753 Q14129 8733130 MGI:1202877 RGD:1309390 DGCR6 601279 +HGNC:18551 DGCR6L DiGeorge syndrome critical region gene 6-like protein-coding gene gene with protein product Approved 22q11.21 22q11.21 FLJ10666 2002-05-08 2015-08-27 85359 ENSG00000128185 OTTHUMG00000150583 uc002zrx.4 AF228708 NM_033257 CCDS13778 Q9BY27 11157784 DGCR6L 609459 +HGNC:19249 DGCR7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-12 +HGNC:2847 DGCR8 DGCR8, microprocessor complex subunit protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "DGCRK6|Gy1|pasha" C22orf12 "chromosome 22 open reading frame 12|DiGeorge syndrome critical region gene 8" 2000-06-29 2016-08-11 2016-10-05 54487 ENSG00000128191 OTTHUMG00000150503 uc002zri.4 "AF165527|AB050770" NM_001190326 "CCDS13773|CCDS54501" Q8WYQ5 21454614 MGI:2151114 RGD:1306365 DGCR8 609030 +HGNC:17227 DGCR9 DiGeorge syndrome critical region gene 9 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 "DGS-A|POM121L5P" DiGeorge syndrome critical region gene 9 2002-11-13 2014-06-12 2014-06-12 25787 ENSG00000273032 uc002zop.3 L77571 NR_024159 8776594 +HGNC:17864 DGCR10 DiGeorge syndrome critical region gene 10 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 DGS-B DiGeorge syndrome critical region gene 10 2002-11-13 2012-04-19 2016-10-05 26222 ENSG00000273164 OTTHUMG00000186099 L77559 NR_026651 8776594 +HGNC:17226 DGCR11 DiGeorge syndrome critical region gene 11 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 DGS-D DiGeorge syndrome critical region gene 11 2002-11-13 2012-04-19 2012-10-16 25786 ENSG00000273311 OTTHUMG00000186100 uc002zos.2 L77561 NR_024157 8776594 +HGNC:17225 DGCR12 DiGeorge syndrome critical region gene 12 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 DGS-E DiGeorge syndrome critical region gene 12 2002-11-13 2014-06-12 2014-06-12 25784 ENSG00000281530 OTTHUMG00000189728 uc062bkt.1 L77562 8776594 +HGNC:16817 DGCR14 DiGeorge syndrome critical region gene 14 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "DGSI|Es2el|ES2|DGS-H" DGCR13 DiGeorge syndrome critical region gene 13 2002-10-30 2015-08-24 8220 ENSG00000100056 OTTHUMG00000150119 uc002zou.4 L77566 XM_005261282 CCDS13756 Q96DF8 "8776594|9063747" MGI:107854 RGD:1308218 DGCR14 601755 +HGNC:2849 DGKA diacylglycerol kinase alpha protein-coding gene gene with protein product Approved 12q13.2 12q13.2 DGK-alpha "DAGK|DAGK1" "diacylglycerol kinase, alpha (80kD)|diacylglycerol kinase, alpha 80kDa" "EF-hand domain containing|Diacylglycerol kinases" "863|1178" 1991-08-21 2015-11-09 2016-10-05 1606 ENSG00000065357 OTTHUMG00000170109 uc001sij.4 AF064767 XM_017018900 CCDS8896 P23743 "8180475|7959783" MGI:102952 RGD:70904 DGKA 125855 2.7.1.107 +HGNC:2850 DGKB diacylglycerol kinase beta protein-coding gene gene with protein product Approved 7p21.2 07p21.2 "KIAA0718|DGK|DGK-BETA" DAGK2 "diacylglycerol kinase, beta (90kD)|diacylglycerol kinase, beta 90kDa" "EF-hand domain containing|Diacylglycerol kinases" "863|1178" 2004-10-20 2015-11-09 2015-11-09 1607 ENSG00000136267 OTTHUMG00000152477 uc064bqu.1 AB018261 NM_004080 "CCDS47547|CCDS47548" Q9Y6T7 7689223 MGI:2442474 RGD:2488 DGKB 604070 2.7.1.107 +HGNC:2851 DGKD diacylglycerol kinase delta protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "KIAA0145|DGKdelta" diglyceride kinase "diacylglycerol kinase, delta (130kD)|diacylglycerol kinase, delta 130kDa" "Pleckstrin homology domain containing|Sterile alpha motif domain containing|Diacylglycerol kinases" "682|760|1178" 1998-10-02 2015-11-09 2016-10-05 8527 ENSG00000077044 OTTHUMG00000133290 uc002vui.2 D63479 NM_003648 "CCDS2504|CCDS46546" Q16760 "8626538|12810723" MGI:2138334 RGD:1563309 DGKD 601826 +HGNC:2852 DGKE diacylglycerol kinase epsilon protein-coding gene gene with protein product Approved 17q22 17q22 "DAGK6|DGK" "diacylglycerol kinase, epsilon (64kD)|diacylglycerol kinase, epsilon 64kDa" Diacylglycerol kinases 1178 1998-10-02 2015-11-09 2015-11-09 8526 ENSG00000153933 OTTHUMG00000178121 uc002iur.4 U49379 NM_003647 CCDS11590 P52429 "8626589|10051413" MGI:1889276 RGD:1560914 DGKE 601440 330780 2.7.1.107 +HGNC:2853 DGKG diacylglycerol kinase gamma protein-coding gene gene with protein product Approved 3q27.2-q27.3 03q27.2-q27.3 DAGK3 "diacylglycerol kinase, gamma (90kD)|diacylglycerol kinase, gamma 90kDa" "EF-hand domain containing|Diacylglycerol kinases" "863|1178" 1994-09-06 2015-11-09 2016-10-11 1608 ENSG00000058866 OTTHUMG00000156617 uc003fqa.4 AF020945 NM_001080744 "CCDS3274|CCDS43181|CCDS43182" P49619 8034597 MGI:105060 RGD:2499 DGKG 601854 2.7.1.107 +HGNC:2854 DGKH diacylglycerol kinase eta protein-coding gene gene with protein product Approved 13q14.11 13q14.11 DGKeta "Pleckstrin homology domain containing|Sterile alpha motif domain containing|Diacylglycerol kinases" "682|760|1178" 2004-04-16 2016-01-14 2016-10-05 160851 ENSG00000102780 OTTHUMG00000016804 uc001uyl.3 AB078967 NM_178009 "CCDS9381|CCDS9382|CCDS55898|CCDS55899" Q86XP1 8702685 MGI:2444188 RGD:1561955 DGKH 604071 +HGNC:2855 DGKI diacylglycerol kinase iota protein-coding gene gene with protein product Approved 7q33 07q33 DGK-IOTA "Ankyrin repeat domain containing|Diacylglycerol kinases" "403|1178" 1998-12-01 2016-01-14 2016-10-05 9162 ENSG00000157680 OTTHUMG00000155697 uc003vtt.4 AF061936 NM_004717 "CCDS5845|CCDS83227" O75912 9830018 MGI:2443430 RGD:735049 DGKI 604072 +HGNC:32395 DGKK diacylglycerol kinase kappa protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 Diacylglycerol kinases 1178 2005-11-25 2016-01-14 2016-01-14 139189 ENSG00000274588 OTTHUMG00000021520 uc033edr.2 AB183864 NM_001013742 CCDS75980 Q5KSL6 16210324 MGI:3580254 RGD:1561510 DGKK 300837 +HGNC:2856 DGKQ diacylglycerol kinase theta protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "DAGK|DAGK7" DAGK4 "diacylglycerol kinase, theta (110kD)|diacylglycerol kinase, theta 110kDa" Diacylglycerol kinases 1178 1996-06-26 2015-11-09 2015-11-09 1609 ENSG00000145214 OTTHUMG00000088629 uc003gbw.5 L38707 XM_017007814 CCDS3342 P52824 "8617502|9099683" MGI:102918 RGD:2320722 DGKQ 601207 +HGNC:2857 DGKZ diacylglycerol kinase zeta protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "DAGK5|hDGKzeta|DGK-ZETA|DAGK6" diacylglycerol kinase, zeta 104kDa Diacylglycerol kinases 1178 1998-10-02 2016-01-14 2016-04-25 8525 ENSG00000149091 OTTHUMG00000166437 uc001nch.2 U51477 NM_001105540 "CCDS41640|CCDS44579|CCDS44580|CCDS55757|CCDS55758|CCDS55759|CCDS7918" Q13574 8626588 MGI:1278339 RGD:70929 DGKZ 601441 2.7.1.107 +HGNC:39263 DGKZP1 diacylglycerol kinase zeta pseudogene 1 pseudogene pseudogene Approved 13q14.11 13q14.11 2010-11-24 2016-01-14 2016-01-14 400126 ENSG00000179611 OTTHUMG00000016825 NG_005323 PGOHUM00000248578 +HGNC:2858 DGUOK deoxyguanosine kinase protein-coding gene gene with protein product Approved 2p13.1 02p13.1 dGK 1996-07-17 2016-10-05 1716 ENSG00000114956 OTTHUMG00000129819 uc002sjx.3 U41668 XM_011532647 "CCDS1931|CCDS1932" Q16854 MGI:1351602 RGD:1304799 DGUOK 601465 121059 2.7.1.113 +HGNC:43441 DGUOK-AS1 DGUOK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p13.1 02p13.1 DGUOK antisense RNA 1 (non-protein coding) 2011-10-28 2012-08-15 2012-10-12 100874048 ENSG00000237883 OTTHUMG00000152820 uc061ksa.1 NR_104029 +HGNC:2860 DHCR7 7-dehydrocholesterol reductase protein-coding gene gene with protein product Approved 11q13.4 11q13.4 SLOS Smith-Lemli-Opitz syndrome 1998-04-27 2004-02-13 2016-10-12 1717 ENSG00000172893 OTTHUMG00000167346 uc001oql.4 AF034544 NM_001360 CCDS8200 Q9UBM7 "9465114|9634533" MGI:1298378 RGD:621769 LRG_340|http://www.lrg-sequence.org/LRG/LRG_340 DHCR7 602858 121066 1.3.1.21 +HGNC:2859 DHCR24 24-dehydrocholesterol reductase protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "KIAA0018|seladin-1" DCE desmosterol-to-cholesterol enzyme 1998-04-27 2016-02-03 1718 ENSG00000116133 OTTHUMG00000009989 uc001cyc.2 AF261758 NM_014762 CCDS600 Q15392 11519011 MGI:1922004 RGD:1306529 DHCR24 606418 121062 1.3.1.72 +HGNC:20603 DHDDS dehydrodolichyl diphosphate synthase subunit protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "HDS|FLJ13102|DS|RP59" dehydrodolichyl diphosphate synthase 2003-05-22 2015-06-26 2016-10-05 79947 ENSG00000117682 OTTHUMG00000003554 uc001bmk.4 AK023164 NM_024887 "CCDS281|CCDS282|CCDS57984|CCDS57983" Q86SQ9 12591616 MGI:1914672 RGD:1311560 DHDDS 608172 259361 +HGNC:17887 DHDH dihydrodiol dehydrogenase protein-coding gene gene with protein product Approved 19q13.33 19q13.33 HUM2DD trans-1,2-dihydrobenzene-1,2-diol dehydrogenase 2002-01-31 2016-02-15 2016-10-05 27294 ENSG00000104808 OTTHUMG00000165029 uc002ple.1 AB021933 NM_014475 CCDS12741 Q9UQ10 10477285 MGI:1919005 RGD:1588686 DHDH 606377 1.3.1.20 +HGNC:2861 DHFR dihydrofolate reductase protein-coding gene gene with protein product Approved 5q14.1 05q14.1 2001-06-22 2015-08-25 1719 ENSG00000228716 OTTHUMG00000162529 uc003kgy.2 NM_000791 "CCDS47240|CCDS78028|CCDS78029" P00374 MGI:94890 RGD:2500 DHFR 126060 159526 objectId:2603 1.5.1.3 +HGNC:27309 DHFR2 dihydrofolate reductase 2 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 FLJ16119 "DHFRP4|DHFRL1" "dihydrofolate reductase pseudogene 4|dihydrofolate reductase-like 1|dihydrofolate reductase like 1" 2005-02-07 2016-06-28 2016-06-28 2016-06-28 200895 ENSG00000178700 OTTHUMG00000159014 uc003drj.4 AL832912 NM_176815 CCDS2926 Q86XF0 "12477932|21876184|25980602" 616588 1.5.1.3 +HGNC:2862 DHFRP1 dihydrofolate reductase pseudogene 1 pseudogene pseudogene Approved 18q11.2 18q11.2 hDHFR-psi 3 2001-06-22 2016-07-28 573971 ENSG00000188985 OTTHUMG00000179427 J00141 NG_000858 "6306253|6089182" +HGNC:2863 DHFRP2 dihydrofolate reductase pseudogene 2 pseudogene pseudogene Approved 6p21.33 06p21.33 hDHFR-psi 2 2001-06-22 2016-07-28 729816 ENSG00000228432 OTTHUMG00000031113 J00145 XR_015665.1 "6089182|6961421|3341383" PGOHUM00000301326 +HGNC:52354 DHFRP3 dihydrofolate reductase pseudogene 3 pseudogene pseudogene Approved 2p12 02p12 hDHFR-psi 3 2016-07-28 2016-07-28 1720 ENSG00000168129 OTTHUMG00000152960 NR_033423 6526269 PGOHUM00000298487 +HGNC:52355 DHFRP5 dihydrofolate reductase pseudogene 5 pseudogene pseudogene Approved 6q11.1 06q11.1 2016-07-28 2016-07-28 100132056 ENSG00000216859 OTTHUMG00000014937 NG_022305 PGOHUM00000301406 +HGNC:52356 DHFRP6 dihydrofolate reductase pseudogene 6 pseudogene pseudogene Approved 6p12.1 06p12.1 2016-07-28 2016-07-28 ENSG00000219095 OTTHUMG00000014905 PGOHUM00000301395 +HGNC:2865 DHH desert hedgehog protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "HHG-3|MGC35145" desert hedgehog (Drosophila) homolog 2000-04-28 2010-06-24 2016-10-05 50846 ENSG00000139549 OTTHUMG00000170408 uc001rtf.4 AB010994 NM_021044 CCDS8779 O43323 "10773676|10640830" MGI:94891 RGD:620711 DHH 605423 121069 C46.004 +HGNC:2867 DHODH dihydroorotate dehydrogenase (quinone) protein-coding gene gene with protein product Approved 16q22.2 16q22.2 dihydroorotate dehydrogenase 1993-06-29 2011-09-05 2015-09-11 1723 ENSG00000102967 OTTHUMG00000178093 uc002fbp.4 NM_001361 CCDS42192 Q02127 8211381 MGI:1928378 RGD:68352 DHODH 126064 225386 objectId:2604 1.3.5.2 +HGNC:2869 DHPS deoxyhypusine synthase protein-coding gene gene with protein product Approved 19p13.13 19p13.13 MIG13 migration-inducing gene 13 1995-12-12 2016-10-05 1725 ENSG00000095059 OTTHUMG00000182618 uc002muh.3 U79262 NM_001930 "CCDS12276|CCDS12277|CCDS59354" P49366 7673224 MGI:2683592 RGD:1303326 DHPS 600944 +HGNC:16445 DHRS1 dehydrogenase/reductase 1 protein-coding gene gene with protein product Approved 14q12 14q12 "FLJ25430|MGC20204|SDR19C1" short chain dehydrogenase/reductase family 19C, member 1 dehydrogenase/reductase (SDR family) member 1 Short chain dehydrogenase/reductase superfamily 743 2003-06-16 2016-05-27 2016-10-05 115817 ENSG00000157379 OTTHUMG00000029333 uc001wok.3 AK058159 NM_138452 CCDS9623 Q96LJ7 "12153138|19027726" MGI:1196314 RGD:1359172 DHRS1 610410 1.1.-.- +HGNC:18349 DHRS2 dehydrogenase/reductase 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "HEP27|SDR25C1" short chain dehydrogenase/reductase family 25C, member 1 dehydrogenase/reductase (SDR family) member 2 Short chain dehydrogenase/reductase superfamily 743 2002-04-26 2016-05-27 2016-05-27 10202 ENSG00000100867 OTTHUMG00000028771 uc001wku.5 NM_182908 "CCDS9604|CCDS41927" Q13268 "7556196|11944995|16685466|19027726" MGI:1918662 RGD:1583909 DHRS2 615194 +HGNC:17693 DHRS3 dehydrogenase/reductase 3 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "retSDR1|Rsdr1|SDR1|RDH17|SDR16C1" short chain dehydrogenase/reductase family 16C, member 1 dehydrogenase/reductase (SDR family) member 3 Short chain dehydrogenase/reductase superfamily 743 2003-12-02 2016-05-27 2016-10-05 9249 ENSG00000162496 OTTHUMG00000001885 uc031tpa.2 AF061741 NM_004753 CCDS146 O75911 "9705317|12226107|19027726" MGI:1315215 RGD:1305584 DHRS3 612830 1.1.1.300 +HGNC:16985 DHRS4 dehydrogenase/reductase 4 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "SCAD-SRL|SDR-SRL|humNRDR|FLJ11008|SDR25C2" short chain dehydrogenase/reductase family 25C, member 2 dehydrogenase/reductase (SDR family) member 4 Short chain dehydrogenase/reductase superfamily 743 2002-12-09 2016-05-27 2016-05-27 10901 ENSG00000157326 OTTHUMG00000028777 uc001wla.5 AF044127 XM_006720005 "CCDS9605|CCDS61408|CCDS61409|CCDS61410|CCDS61411|CCDS61412" Q9BTZ2 "10333503|19027726" MGI:90169 RGD:708482 DHRS4 611596 1.1.1.184 +HGNC:23175 DHRS4-AS1 DHRS4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q11.2 14q11.2 "PRO1488|AS1DHRS4" C14orf167 "chromosome 14 open reading frame 167|DHRS4 antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2003-09-29 2012-04-30 2012-08-16 2014-09-19 55449 ENSG00000215256 OTTHUMG00000171901 uc001wky.4 AF116636 NR_023921 Q9P1J3 22891334 616925 +HGNC:19732 DHRS4L1 dehydrogenase/reductase 4 like 1 other unknown Approved 14q11.2 14q11.2 SDR25C4 short chain dehydrogenase/reductase family 25C, member 4 dehydrogenase/reductase (SDR family) member 4 like 1 Short chain dehydrogenase/reductase superfamily 743 2003-01-13 2016-05-27 2016-05-27 728635 ENSG00000225766 OTTHUMG00000172193 NM_001082488 P0CG22 "10333503|20525226|22891334" 615195 +HGNC:19731 DHRS4L2 dehydrogenase/reductase 4 like 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 SDR25C3 short chain dehydrogenase/reductase family 25C, member 3 dehydrogenase/reductase (SDR family) member 4 like 2 Short chain dehydrogenase/reductase superfamily 743 2003-01-13 2016-05-27 2016-05-27 317749 ENSG00000187630 OTTHUMG00000028778 uc058zud.1 NM_001193635 "CCDS9606|CCDS73621" Q6PKH6 DHRS4L2 615196 1.1.-.- +HGNC:21524 DHRS7 dehydrogenase/reductase 7 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "retDSR4|SDR34C1" "retinal short-chain dehydrogenase/reductase 4|short chain dehydrogenase/reductase family 34C, member 1" dehydrogenase/reductase (SDR family) member 7 Short chain dehydrogenase/reductase superfamily 743 2003-12-02 2016-05-27 2016-05-27 51635 ENSG00000100612 OTTHUMG00000140331 uc001xes.5 AF151844 NM_016029 "CCDS9743|CCDS81810" Q9Y394 "10800688|10810093|19027726" MGI:1913625 RGD:1565002 DHRS7 612833 +HGNC:24547 DHRS7B dehydrogenase/reductase 7B protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "DKFZp566O084|MGC8916|CGI-93|SDR32C1" short chain dehydrogenase/reductase family 32C, member 1 dehydrogenase/reductase (SDR family) member 7B Short chain dehydrogenase/reductase superfamily 743 2005-12-15 2016-05-27 2016-10-05 25979 ENSG00000109016 OTTHUMG00000178944 uc002gyo.4 BC004126 NM_015510 "CCDS11215|CCDS82092" Q6IAN0 "10810093|11230166|19027726" MGI:2384931 RGD:1311243 DHRS7B 616160 +HGNC:32423 DHRS7C dehydrogenase/reductase 7C protein-coding gene gene with protein product Approved 17p13.1 17p13.1 SDR32C2 short chain dehydrogenase/reductase family 32C, member 2 dehydrogenase/reductase (SDR family) member 7C Short chain dehydrogenase/reductase superfamily 743 2005-12-15 2016-05-27 2016-05-27 201140 ENSG00000184544 OTTHUMG00000177944 uc010vvb.2 XM_113912 "CCDS56020|CCDS58517" A6NNS2 19027726 MGI:1915710 RGD:1306989 DHRS7C 616161 +HGNC:16888 DHRS9 dehydrogenase/reductase 9 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "RDHL|3alpha-HSD|RETSDR8|RDH15|SDR9C4" "NADP-dependent retinol dehydrogenase/reductase|3-alpha hydroxysteroid dehydrogenase|retinol dehydrogenase homolog|short chain dehydrogenase/reductase family 9C, member 4" dehydrogenase/reductase (SDR family) member 9 Short chain dehydrogenase/reductase superfamily 743 2003-12-02 2016-05-27 2016-05-27 10170 ENSG00000073737 OTTHUMG00000132180 uc061phg.1 AF067174 NM_005771 "CCDS2231|CCDS74600" Q9BPW9 "11304534|11294878|19027726" MGI:2442798 RGD:620655 DHRS9 612131 +HGNC:28639 DHRS11 dehydrogenase/reductase 11 protein-coding gene gene with protein product Approved 17q12 17q12 "MGC4172|SDR24C1" short chain dehydrogenase/reductase family 24C, member 1 dehydrogenase/reductase (SDR family) member 11 Short chain dehydrogenase/reductase superfamily 743 2008-11-21 2016-05-27 2016-05-27 79154 ENSG00000278535 OTTHUMG00000188442 uc032ggx.3 NM_024308 CCDS11315 Q6UWP2 "12975309|19027726" MGI:2652816 RGD:1307935 DHRS11 616159 +HGNC:25832 DHRS12 dehydrogenase/reductase 12 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "FLJ13639|SDR40C1" short chain dehydrogenase/reductase family 40C, member 1 dehydrogenase/reductase (SDR family) member 12 Short chain dehydrogenase/reductase superfamily 743 2006-08-08 2016-05-27 2016-05-27 79758 ENSG00000102796 OTTHUMG00000016952 uc001vfq.5 AK023701 NM_024705 "CCDS9430|CCDS31976|CCDS58292" A0PJE2 19027726 DHRS12 616163 +HGNC:28326 DHRS13 dehydrogenase/reductase 13 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "MGC23280|SDR7C5" short chain dehydrogenase/reductase family 7C, member 5 dehydrogenase/reductase (SDR family) member 13 Short chain dehydrogenase/reductase superfamily 743 2006-08-08 2016-05-27 2016-05-27 147015 ENSG00000167536 OTTHUMG00000132678 uc002hde.4 BC015582 NM_144683 CCDS11246 Q6UX07 "12975309|19027726" MGI:1917701 RGD:1305508 DHRS13 616157 1.1.-.- +HGNC:18399 DHRSX dehydrogenase/reductase X-linked protein-coding gene gene with protein product Approved Xp22.33 and Yp11.2 Xp22.33 and Yp11.2 "DHRS5X|DHRSXY|DHRSY|DHRS5Y|SDR46C1|SDR7C6" "short chain dehydrogenase/reductase family 7C, member 6|short chain dehydrogenase/reductase family 46C, member 1|dehydrogenase/reductase (SDR family) Y-linked" dehydrogenase/reductase (SDR family) X chromosome Pseudoautosomal region 1 715 2002-03-18 2016-05-27 2016-05-27 207063 ENSG00000169084 OTTHUMG00000021068 uc004fps.5 AJ293620 NM_145177 CCDS35195 Q8N5I4 "11731500|19027726" MGI:2181510 RGD:1305017 DHRSX +HGNC:38713 DHRSX-IT1 DHRSX intronic transcript 1 non-coding RNA RNA, long non-coding Approved Xp22.33 and Yp11 Xp22.33 and Yp11 DHRSX-IT DHRSXIT1 DHRSX intronic transcript 1 (non-protein coding) Pseudoautosomal region 1 715 2010-07-28 2011-03-23 2015-02-25 2015-02-25 106478924 ENSG00000223571 OTTHUMG00000067406 uc065coo.1 +HGNC:23537 DHTKD1 dehydrogenase E1 and transketolase domain containing 1 protein-coding gene gene with protein product Approved 10p14 10p14 "KIAA1630|MGC3090|DKFZP762M115|CMT2Q" 2003-11-24 2015-06-25 55526 ENSG00000181192 OTTHUMG00000017677 uc001ild.6 BC002477 NM_018706 CCDS7087 Q96HY7 10997877 MGI:2445096 RGD:1308092 DHTKD1 614984 320765 +HGNC:2749 DHX8 DEAH-box helicase 8 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "HRH1|PRP22|PRPF22" DDX8 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 8 (RNA helicase)|DEAH (Asp-Glu-Ala-His) box polypeptide 8" DEAH-box helicases 500 1995-12-20 2003-06-20 2016-01-07 2016-01-07 1659 ENSG00000067596 OTTHUMG00000180883 uc002idu.2 D50487 NM_001322220 "CCDS11464|CCDS77040" Q14562 7935475 MGI:1306823 RGD:1310723 DHX8 600396 +HGNC:2750 DHX9 DExH-box helicase 9 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 RHA "NDH II|RNA helicase A|leukophysin|nuclear DNA helicase II" "LKP|DDX9" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 9|DEAH (Asp-Glu-Ala-His) box helicase 9" DEAH-box helicases 500 1995-12-11 2003-06-20 2016-09-27 2016-10-05 1660 ENSG00000135829 OTTHUMG00000035337 uc001gpr.4 L13848 NM_030588 CCDS41444 Q08211 "8344961|9111062" MGI:108177 RGD:1308548 DHX9 603115 +HGNC:2751 DHX9P1 DEAH-box helicase 9 pseudogene 1 pseudogene pseudogene Approved 13q22.3 13q22.3 "DDX9P|DHX9P" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 9 (RNA helicase A) pseudogene|DEAH (Asp-Glu-Ala-His) box polypeptide 9 pseudogene|DEAH (Asp-Glu-Ala-His) box polypeptide 9 pseudogene 1" 1997-01-08 2010-02-24 2016-01-07 2016-10-05 1661 ENSG00000228002 OTTHUMG00000017101 NG_002657 9325059 +HGNC:2738 DHX15 DEAH-box helicase 15 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "HRH2|DBP1|PRP43|PrPp43p|PRPF43" DDX15 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 15|DEAH (Asp-Glu-Ala-His) box polypeptide 15|DEAH (Asp-Glu-Ala-His) box helicase 15" DEAH-box helicases 500 1997-12-05 2003-06-20 2016-01-07 2016-10-05 1665 ENSG00000109606 OTTHUMG00000160304 uc003gqx.4 AB001636 NM_001358 CCDS33966 O43143 9388478 MGI:1099786 RGD:1308072 DHX15 603403 +HGNC:2739 DHX16 DEAH-box helicase 16 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "DBP2|Prp2|PRPF2" DDX16 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 16|DEAH (Asp-Glu-Ala-His) box polypeptide 16" DEAH-box helicases 500 1998-11-04 2003-06-20 2016-01-07 2016-10-05 8449 ENSG00000204560 OTTHUMG00000031060 uc003nqz.4 AB001601 NM_003587 CCDS4685 O60231 "9547260|20423332" MGI:1916442 RGD:1302963 DHX16 603405 +HGNC:15815 DHX29 DExH-box helicase 29 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 DDX29 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 29|DEAH-box helicase 29" DEAH-box helicases 500 2001-07-18 2003-06-20 2016-09-27 2016-09-27 54505 ENSG00000067248 OTTHUMG00000162313 uc003jpx.4 AY036974 NM_019030 CCDS34158 Q7Z478 MGI:2145374 RGD:2318361 DHX29 612720 +HGNC:16716 DHX30 DExH-box helicase 30 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "KIAA0890|FLJ11214" DDX30 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 30|DEAH-box helicase 30" DEAH-box helicases 500 2001-11-27 2003-06-13 2016-09-27 2016-10-05 22907 ENSG00000132153 OTTHUMG00000133522 uc003cru.4 AB020697 NM_138615 CCDS2759 Q7L2E3 "10048485|18022663" MGI:1920081 RGD:1308888 DHX30 616423 +HGNC:16717 DHX32 DEAH-box helicase 32 (putative) protein-coding gene gene with protein product Approved 10q26.2 10q26.2 "FLJ10889|FLJ10694|DHLP1" DDX32 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32|DEAH (Asp-Glu-Ala-His) box polypeptide 32" DEAH-box helicases 500 2001-11-27 2004-01-30 2016-01-07 2016-10-05 55760 ENSG00000089876 OTTHUMG00000019238 uc001ljf.1 NM_018180 CCDS7652 Q7L7V1 16959245 MGI:2141813 RGD:1311740 DHX32 607960 +HGNC:16718 DHX33 DEAH-box helicase 33 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "FLJ21972|DKFZp762F2011" DDX33 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 33|DEAH (Asp-Glu-Ala-His) box polypeptide 33" DEAH-box helicases 500 2001-11-27 2003-06-13 2016-01-07 2016-10-05 56919 ENSG00000005100 OTTHUMG00000102041 uc002gca.3 AL359945 NM_020162 CCDS11072 Q9H6R0 MGI:2445102 RGD:1307239 DHX33 614405 +HGNC:16719 DHX34 DExH-box helicase 34 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 KIAA0134 DDX34 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 34|DEAH-box helicase 34" DEAH-box helicases 500 2001-11-27 2003-06-13 2016-09-27 2016-10-05 9704 ENSG00000134815 OTTHUMG00000149959 uc010xyn.2 D50924 NM_014681 CCDS12700 Q14147 "10708517|8590280" MGI:1918973 RGD:1584452 DHX34 615475 +HGNC:15861 DHX35 DEAH-box helicase 35 protein-coding gene gene with protein product Approved 20q11.23-q12 20q11.23-q12 "FLJ22759|KAIA0875" "C20orf15|DDX35" "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 35|DEAH (Asp-Glu-Ala-His) box polypeptide 35" DEAH-box helicases 500 2001-11-27 2003-06-13 2016-01-07 2016-10-11 60625 ENSG00000101452 OTTHUMG00000032463 uc002xjh.4 AK026412 NM_021931 "CCDS13310|CCDS54463" Q9H5Z1 MGI:1918965 RGD:1311165 DHX35 +HGNC:14410 DHX36 DEAH-box helicase 36 protein-coding gene gene with protein product Approved 3q25.2 03q25.2 "MLEL1|KIAA1488" DDX36 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 36|DEAH (Asp-Glu-Ala-His) box polypeptide 36" DEAH-box helicases 500 2001-11-23 2003-06-20 2016-01-07 2016-01-07 170506 ENSG00000174953 OTTHUMG00000159109 uc003ezy.5 AF217190 NM_020865 "CCDS3171|CCDS54657" Q9H2U1 MGI:1919412 RGD:1308767 DHX36 612767 +HGNC:17210 DHX37 DEAH-box helicase 37 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "KIAA1517|MGC4322|MGC2695" DDX37 "DEAD/DEAH box helicase DDX37|DEAH (Asp-Glu-Ala-His) box polypeptide 37" DEAH-box helicases 500 2001-11-21 2003-06-20 2016-01-07 2016-01-07 57647 ENSG00000150990 OTTHUMG00000168547 uc001ugy.4 AB040950 NM_032656 CCDS9261 Q8IY37 10819331 MGI:3028576 RGD:1306837 DHX37 +HGNC:17211 DHX38 DEAH-box helicase 38 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 "PRP16|KIAA0224|hPrp16|PRPF16" DDX38 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 38|DEAH (Asp-Glu-Ala-His) box polypeptide 38" DEAH-box helicases 500 2001-12-11 2003-06-20 2016-01-07 2016-10-05 9785 ENSG00000140829 OTTHUMG00000137596 uc002fcb.4 AF038391 NM_014003 CCDS10907 Q92620 "9524131|9039502" MGI:1927617 RGD:1310345 DHX38 605584 +HGNC:18018 DHX40 DEAH-box helicase 40 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "ARG147|PAD|FLJ22060" DDX40 "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 40 (RNA helicase)|DEAH (Asp-Glu-Ala-His) box polypeptide 40" DEAH-box helicases 500 2002-02-05 2003-06-20 2016-01-07 2016-10-05 79665 ENSG00000108406 OTTHUMG00000179401 uc002ixn.3 AF260270 NM_024612 "CCDS11617|CCDS54150" Q8IX18 MGI:1914737 RGD:1359618 DHX40 607570 +HGNC:20687 DHX40P1 DEAH-box helicase 40 pseudogene 1 pseudogene pseudogene Approved 17q23.1 17q23.1 DHX40P "DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene|DEAH (Asp-Glu-Ala-His) box polypeptide 40 pseudogene 1" 2005-12-20 2010-02-25 2016-01-07 2016-10-05 107133522 ENSG00000266992 OTTHUMG00000179979 BC029885 NG_046682 +HGNC:20086 DHX57 DExH-box helicase 57 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 DDX57 DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57 DEAH-box helicases 500 2003-06-13 2016-09-27 2016-10-05 90957 ENSG00000163214 OTTHUMG00000102103 uc002rrf.5 AF070590 NM_145646 CCDS1800 Q6P158 MGI:2147067 RGD:1310340 DHX57 +HGNC:29517 DHX58 DExH-box helicase 58 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "LGP2|D11LGP2" RNA helicase LGP2 DEXH (Asp-Glu-X-His) box polypeptide 58 DEAH-box helicases 500 2007-06-20 2016-09-27 2016-09-27 79132 ENSG00000108771 OTTHUMG00000133493 uc002hyw.5 BC014949 NM_024119 CCDS11416 Q96C10 11735219 MGI:1931560 RGD:1310093 DHX58 608588 +HGNC:21528 DIABLO diablo IAP-binding mitochondrial protein protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "SMAC|DIABLO-S|FLJ25049|FLJ10537|DFNA64" second mitochondria-derived activator of caspase diablo, IAP-binding mitochondrial protein 2003-10-27 2016-03-08 2016-03-08 56616 ENSG00000184047 OTTHUMG00000157014 uc010tab.4 AF262240 NM_019887 "CCDS9228|CCDS9229|CCDS73541" Q9NR28 "12749848|17237824|21722859" MGI:1913843 RGD:1310885 DIABLO 605219 270442 +HGNC:2875 DIANPH diabetic nephropathy phenotype phenotype only Approved 18q22.3-q23 18q22.3-q23 1999-10-28 2014-02-05 23771 "12427143|12906866" +HGNC:2876 DIAPH1 diaphanous related formin 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "hDIA1|LFHL1" DFNA1 "diaphanous (Drosophila, homolog) 1|diaphanous homolog 1 (Drosophila)" 1998-03-17 2015-11-18 2016-10-05 1729 ENSG00000131504 OTTHUMG00000149893 uc063iba.1 BC007411 NM_005219 "CCDS43373|CCDS43374" O60610 "9360932|1350680" MGI:1194490 RGD:1310707 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org DIAPH1 602121 121073 +HGNC:2877 DIAPH2 diaphanous related formin 2 protein-coding gene gene with protein product Approved Xq21.33 Xq21.33 "POF|DIA|POF2|DIA2" "diaphanous (Drosophila, homolog) 2|diaphanous homolog 2 (Drosophila)" 1998-03-17 2015-11-18 2016-10-05 1730 ENSG00000147202 OTTHUMG00000022689 uc004efu.5 Y15909 "NM_006729|NM_007309" "CCDS14467|CCDS14468" O60879 9360932 MGI:1858500 RGD:1564399 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DIAPH2 DIAPH2 300108 121078 +HGNC:16972 DIAPH2-AS1 DIAPH2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq21.33 Xq21.33 DIAPH2 antisense RNA 1 (non-protein coding) 2011-06-10 2012-08-15 2016-10-05 10824 ENSG00000236256 OTTHUMG00000021989 uc065afh.1 NR_125391 Q14236 "8133036|7736777" 300347 +HGNC:15480 DIAPH3 diaphanous related formin 3 protein-coding gene gene with protein product Approved 13q21.2 13q21.2 "DRF3|FLJ34705|AN|NSDAN" AUNA1 "diaphanous (Drosophila, homolog) 3|auditory neuropathy, autosomal dominant 1|diaphanous homolog 3 (Drosophila)" 2001-05-02 2015-11-18 2015-11-18 81624 ENSG00000139734 OTTHUMG00000017004 uc001vht.6 AL137718 NM_001042517 "CCDS41898|CCDS58294|CCDS58295|CCDS58296|CCDS58297|CCDS73579|CCDS73580" Q9NSV4 "14767582|20624953" MGI:1927222 RGD:1593287 DIAPH3 614567 304486 +HGNC:39915 DIAPH3-AS1 DIAPH3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q21.2 13q21.2 DIAPH3 antisense RNA 1 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100874195 ENSG00000227528 OTTHUMG00000017002 uc031qlx.3 NR_109838 +HGNC:39916 DIAPH3-AS2 DIAPH3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q21.2 13q21.2 DIAPH3 antisense RNA 2 (non-protein coding) 2011-04-11 2012-06-13 2012-08-15 2014-11-19 100874196 ENSG00000223815 OTTHUMG00000017003 uc031qma.1 NR_046540 +HGNC:17098 DICER1 dicer 1, ribonuclease III protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "Dicer|KIAA0928|K12H4.8-LIKE|HERNA" dicer 1, double-stranded RNA-specific endoribonuclease MNG1 "Dicer1, Dcr-1 homolog (Drosophila)|multinodular goitre 1|dicer 1, ribonuclease type III" RNA helicases 1168 2002-05-09 2016-03-24 2016-10-12 23405 ENSG00000100697 OTTHUMG00000166134 uc001ydw.3 AB028449 XM_011536600 "CCDS9931|CCDS55941" Q9UPY3 "10051563|10786632|21205968" MGI:2177178 RGD:1309381 LRG_492|http://www.lrg-sequence.org/LRG/LRG_492 DICER1 606241 209285 +HGNC:43017 DICER1-AS1 DICER1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q32.13 14q32.13 "FLJ45244|DICER1-AS" DICER1 antisense RNA (non-protein coding) DICER1 antisense RNA 1 (non-protein coding) 2011-09-16 2012-01-25 2012-08-15 2012-10-12 400242 ENSG00000235706 OTTHUMG00000150190 uc059eud.1 BC040596 NR_015415 +HGNC:2680 DIDO1 death inducer-obliterator 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "DIO1|dJ885L7.8|FLJ11265|KIAA0333|DIO-1|BYE1" "C20orf158|DATF1" "chromosome 20 open reading frame 158|death associated transcription factor 1" PHD finger proteins 88 1999-12-17 2005-11-11 2005-11-11 2014-11-19 11083 ENSG00000101191 OTTHUMG00000032945 uc002ydt.3 AB002331 NM_080796 "CCDS13508|CCDS13509|CCDS33506" Q9BTC0 10393935 MGI:1344352 RGD:1311173 DIDO1 604140 +HGNC:28440 DIEXF digestive organ expansion factor homolog (zebrafish) protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "MGC29875|DEF|UTP25" C1orf107 chromosome 1 open reading frame 107 2005-06-03 2011-02-16 2011-02-16 2016-02-25 27042 ENSG00000117597 OTTHUMG00000036654 uc001hhr.3 BC022964 NM_014388 CCDS1493 Q68CQ4 16322560 MGI:2138080 RGD:1359148 DIEXF +HGNC:2880 DIFF6L entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:2881 DIH1 diaphragmatic hernia 1 phenotype phenotype only Approved 15q26.1-q26.2 15q26.1-q26.2 HCD 1995-01-26 2006-04-26 1732 "15057983|15750894" 142340 +HGNC:30217 DIMT1 DIM1 dimethyladenosine transferase 1 homolog protein-coding gene gene with protein product Approved 5q12.1 05q12.1 HSA9761 DIMT1L "DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)|DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)" 2006-08-11 2011-08-11 2015-07-02 2015-09-11 27292 ENSG00000086189 OTTHUMG00000131223 uc003jta.4 AF102147 NM_014473 CCDS3981 Q9UNQ2 11124703 MGI:1913504 RGD:1311752 612499 +HGNC:2883 DIO1 deiodinase, iodothyronine type I protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "thyroxine 5'-deiodinase|type I iodothyronine deiodinase" TXDI1 Selenoproteins 890 1993-12-14 2016-04-06 2016-10-05 1733 ENSG00000211452 OTTHUMG00000008435 uc021onq.2 NM_000792 "CCDS30722|CCDS41339|CCDS41340|CCDS53320|CCDS81328" P49895 8964838 MGI:94896 RGD:2504 DIO1 147892 objectId:2481 1.21.99.4 +HGNC:2884 DIO2 deiodinase, iodothyronine type II protein-coding gene gene with protein product Approved 14q31.1 14q31.1 "TXDI2|SelY" "thyroxine deiodinase, type II|deiodonase-2|deiodinase-2" Selenoproteins 890 1997-05-09 2016-09-21 2016-10-05 1734 ENSG00000211448 OTTHUMG00000171443 uc010asy.4 AF007144 NM_001007023 "CCDS45146|CCDS55934" Q92813 "8755651|10343107" MGI:1338833 RGD:68418 DIO2 601413 objectId:2482 1.97.1.10 +HGNC:44153 DIO2-AS1 DIO2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q31.1 14q31.1 DIO2 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100628307 ENSG00000258766 OTTHUMG00000171497 uc001xuw.2 BC039670 NR_038355 +HGNC:2885 DIO3 deiodinase, iodothyronine type III protein-coding gene gene with protein product Approved 14q32.31 14q32.31 thyroxine 5-deiodinase TXDI3 Selenoproteins 890 1996-04-09 2016-09-21 2016-10-05 1735 ENSG00000197406 OTTHUMG00000160681 uc021sdx.1 S79854 NM_001362 CCDS41992 P55073 "9787088|7593630" MGI:1306782 RGD:68420 DIO3 601038 objectId:2483 1.21.99.3 +HGNC:20348 DIO3OS DIO3 opposite strand/antisense RNA (head to head) non-coding RNA RNA, long non-coding Approved 14q32.31 14q32.31 "NCRNA00041|DIO3-AS1" non-protein coding RNA 41 C14orf134 "chromosome 14 open reading frame 134|deiodinase, iodothyronine, type III opposite strand|DIO3 opposite strand/antisense RNA" Long non-coding RNAs 788 2003-01-28 2011-11-14 2012-10-15 2015-01-29 64150 ENSG00000258498 OTTHUMG00000171682 uc059fic.1 AF305836 NR_002770 14962667 MGI:2664395 RGD:7653627 608523 Dio3os +HGNC:17217 DIP2A disco interacting protein 2 homolog A protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "Dip2|KIAA0184" C21orf106 "chromosome 21 open reading frame 106|DIP2 disco-interacting protein 2 homolog A (Drosophila)" 2003-12-15 2006-01-13 2015-11-23 2015-11-23 23181 ENSG00000160305 OTTHUMG00000090717 uc002zjo.3 AF490768 NM_015151 "CCDS46655|CCDS46656|CCDS46657|CCDS54490|CCDS54491" Q14689 MGI:2385920 RGD:1582897 DIP2A 607711 +HGNC:41430 DIP2A-IT1 DIP2A intronic transcript 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 DIP2A intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100862692 ENSG00000223692 OTTHUMG00000090716 uc031rwd.2 NR_046400 +HGNC:29284 DIP2B disco interacting protein 2 homolog B protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "KIAA1463|FLJ34278" DIP2 disco-interacting protein 2 homolog B (Drosophila) 2006-01-13 2015-11-23 2015-11-23 57609 ENSG00000066084 OTTHUMG00000169475 uc001rwv.4 AB040896 NM_173602 CCDS31799 Q9P265 MGI:2145977 RGD:1305671 DIP2B 611379 +HGNC:29150 DIP2C disco interacting protein 2 homolog C protein-coding gene gene with protein product Approved 10p15.3 10p15.3 KIAA0934 "KIAA0934|DIP2 disco-interacting protein 2 homolog C (Drosophila)" 2004-04-20 2006-01-13 2015-11-23 2015-11-23 22982 ENSG00000151240 OTTHUMG00000017532 uc001ifp.5 BC035216 NM_014974 CCDS7054 Q9Y2E4 MGI:1920179 RGD:1560155 DIP2C 611380 +HGNC:19127 DIRAS1 DIRAS family GTPase 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "Di-Ras1|GBTS1|RIG" DIRAS family, GTP-binding RAS-like 1 RAS type GTPase family 389 2003-02-07 2016-05-04 2016-05-04 148252 ENSG00000176490 OTTHUMG00000180439 uc002lwf.4 BC030660 XM_011527713 CCDS12092 O95057 12107278 MGI:2183442 RGD:1310445 DIRAS1 607862 +HGNC:19323 DIRAS2 DIRAS family GTPase 2 protein-coding gene gene with protein product Approved 9q22.2 09q22.2 "Di-Ras2|DKFZp761C07121" DIRAS family, GTP-binding RAS-like 2 RAS type GTPase family 389 2003-02-07 2016-05-04 2016-10-05 54769 ENSG00000165023 OTTHUMG00000020196 uc004aqx.2 AB076889 NM_017594 CCDS6687 Q96HU8 12194967 MGI:1915453 RGD:1305580 DIRAS2 607863 +HGNC:687 DIRAS3 DIRAS family GTPase 3 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 NOEY2 ARHI "ras homolog gene family, member I|DIRAS family, GTP-binding RAS-like 3" RAS type GTPase family 389 1999-01-22 2005-01-27 2016-05-04 2016-10-12 9077 ENSG00000162595 OTTHUMG00000009544 uc001ded.4 U96750 NM_004675 CCDS641 O95661 9874798 RGD:7735855 LRG_1034|http://www.lrg-sequence.org/LRG/LRG_1034 DIRAS3 605193 +HGNC:15760 DIRC1 disrupted in renal carcinoma 1 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 2001-06-21 2016-10-05 116093 ENSG00000174325 OTTHUMG00000132646 uc002uqi.2 AY039011 NM_052952 CCDS2296 Q969H9 11587072 DIRC1 606423 +HGNC:16628 DIRC2 disrupted in renal carcinoma 2 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "FLJ14784|RCC4" "renal cell carcinoma 4|disrupted in renal cancer protein 2" Solute carriers 752 2002-03-19 2013-05-22 84925 ENSG00000138463 OTTHUMG00000159553 uc003efw.5 AK027690 NM_032839 CCDS3018 Q96SL1 11912179 MGI:2387188 RGD:1310939 DIRC2 602773 SLC49A4 objectId:1913 +HGNC:17805 DIRC3 disrupted in renal carcinoma 3 other unknown Approved 2q35 02q35 FLJ14199 2003-09-22 2014-11-18 729582 ENSG00000231672 OTTHUMG00000155287 uc061sgw.1 AK024261 NR_026597 12939738 608262 326692 +HGNC:50636 DIRC3-AS1 DIRC3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q35 02q35 2014-06-02 2014-06-02 105373877 ENSG00000233143 OTTHUMG00000155286 CO245227 NR_133642 +HGNC:20604 DIS3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease protein-coding gene gene with protein product Approved 13q21.33 13q21.33 "dis3p|RRP44|EXOSC11" exosome component 11 KIAA1008 "KIAA1008|DIS3 mitotic control homolog (S. cerevisiae)" Exosome complex 817 2004-04-16 2007-01-12 2015-07-03 2016-10-05 22894 ENSG00000083520 OTTHUMG00000017070 uc001vix.6 AB023225 NM_014953 "CCDS9447|CCDS45057|CCDS81772" Q9Y2L1 "11935316|9562621" MGI:1919912 RGD:1304646 DIS3 607533 +HGNC:28698 DIS3L DIS3 like exosome 3'-5' exoribonuclease protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "MGC4562|FLJ38088|KIAA1955|DIS3L1" DIS3 mitotic control homolog (S. cerevisiae)-like Exosome complex 817 2007-01-12 2014-03-05 2014-11-19 115752 ENSG00000166938 OTTHUMG00000133181 uc010ujm.3 NM_133375 "CCDS10214|CCDS45286" Q8TF46 20531386 MGI:2143272 RGD:1308959 DIS3L 614183 +HGNC:28648 DIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "FLJ36974|MGC42174" FAM6A "family with sequence similarity 6, member A|DIS3 mitotic control homolog (S. cerevisiae)-like 2" 2007-01-17 2014-03-05 2016-10-12 129563 ENSG00000144535 OTTHUMG00000153385 uc010fxz.4 BC026166 NM_152383 "CCDS42834|CCDS58752|CCDS58753" Q8IYB7 "22306653|23503588" MGI:2442555 RGD:1560168 LRG_534|http://www.lrg-sequence.org/LRG/LRG_534 DIS3L2 614184 293019 +HGNC:14021 DIS3L2P1 DIS3 like 3'-5' exoribonuclease 2 pseudogene 1 pseudogene pseudogene Approved 2q37.1 02q37.1 "FAM6B|DIS3L2P" "family with sequence similarity 6, member B pseudogene|DIS3 mitotic control homolog (S. cerevisiae)-like 2 pseudogene|DIS3 mitotic control homolog (S. cerevisiae)-like 2 pseudogene 1|DIS3L2 pseudogene 1" 2002-12-10 2010-10-12 2015-04-07 2015-04-07 282697 ENSG00000223788 OTTHUMG00000153337 AF307337 NG_009945 11352565 +HGNC:2888 DISC1 disrupted in schizophrenia 1 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 2000-01-20 2016-10-05 27185 ENSG00000162946 OTTHUMG00000037835 uc010pww.3 AF222980 NM_018662 "CCDS31055|CCDS31056|CCDS53482|CCDS53483|CCDS53484|CCDS59205|CCDS59206|CCDS59207|CCDS53485" Q9NRI5 10814723 MGI:2447658 RGD:631359 DISC1 605210 121089 +HGNC:41325 DISC1-IT1 DISC1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q42.2 01q42.2 DISC1 intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 104472714 ENSG00000226758 OTTHUMG00000037834 uc057qju.1 NR_126441 +HGNC:33625 DISC1FP1 DISC1 fusion partner 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 11q14.3 11q14.3 2012-03-16 2014-11-19 101929222 ENSG00000261645 OTTHUMG00000167309 uc031yah.1 "AK130626|EU302123" NR_104190 +HGNC:2889 DISC2 disrupted in schizophrenia 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 1q42.1 01q42.1 "DISC1-AS1|DISC1OS|NCRNA00015" "DISC1 antisense RNA 1|non-protein coding RNA 15" Long non-coding RNAs 788 2000-01-20 2008-08-13 2014-10-22 27184 uc057qjs.1 AF222981 NR_002227 "10814723|15478311" 606271 DISC2 +HGNC:19711 DISP1 dispatched RND transporter family member 1 protein-coding gene gene with protein product Approved 1q41 01q41 "DISPA|MGC13130|DKFZP434I0428|MGC16796" dispatched homolog 1 (Drosophila) 2003-12-12 2016-01-15 2016-10-05 84976 ENSG00000154309 OTTHUMG00000037893 uc057prm.1 AK056569 NM_032890 CCDS1536 Q96F81 10619433 MGI:1916147 RGD:1307675 DISP1 607502 242325 +HGNC:19712 DISP2 dispatched RND transporter family member 2 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "DISPB|KIAA1742|HsT16908" dispatched homolog 2 (Drosophila) 2003-12-12 2016-01-15 2016-10-05 85455 ENSG00000140323 OTTHUMG00000129983 uc001zlk.2 AB051529 NM_033510 CCDS10056 A7MBM2 "11214970|10619433" MGI:2388733 RGD:1309569 DISP2 607503 +HGNC:29251 DISP3 dispatched RND transporter family member 3 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 KIAA1337 dispatched homolog 3 (Drosophila) PTCHD2 patched domain containing 2 2005-05-24 2016-01-15 2016-01-15 2016-01-15 57540 ENSG00000204624 OTTHUMG00000002074 uc001ash.5 AB037758 XM_052561 CCDS41247 Q9P2K9 "15738394|25281927" MGI:2444403 RGD:1305820 611251 +HGNC:23695 DIXDC1 DIX domain containing 1 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "KIAA1735|Dixin" Dishevelled segment polarity proteins 505 2003-12-03 2014-03-20 85458 ENSG00000150764 OTTHUMG00000166912 uc031yfb.2 AB051522 NM_001037954 "CCDS60957|CCDS73381|CCDS73382" Q155Q3 12792787 MGI:2679721 RGD:1309902 DIXDC1 610493 +HGNC:2890 DKC1 dyskerin pseudouridine synthase 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "XAP101|dyskerin|NAP57|NOLA4|Cbf5" H/ACA ribonucleoprotein complex subunit 4 DKC dyskeratosis congenita 1, dyskerin H/ACA ribonucleoprotein complex 1221 2001-06-22 2016-02-17 2016-10-12 1736 ENSG00000130826 OTTHUMG00000024242 uc004fmm.5 AJ224481 NM_001363 "CCDS14761|CCDS76062" O60832 "9590285|9888995" MGI:1861727 RGD:621780 "DKC1base: Mutation registry for Hoyeraal-Hreidarsson syndrome|http://structure.bmc.lu.se/idbase/DKC1base/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DKC1|LRG_55|http://www.lrg-sequence.org/LRG/LRG_55" DKC1 300126 121091 +HGNC:2891 DKK1 dickkopf WNT signaling pathway inhibitor 1 protein-coding gene gene with protein product Approved 10q21.1 10q21.1 "SK|DKK-1" "dickkopf (Xenopus laevis) homolog 1|dickkopf 1 homolog (Xenopus laevis)" 2000-09-01 2013-05-15 2016-10-05 22943 ENSG00000107984 OTTHUMG00000018247 uc001jjr.4 NM_012242 CCDS7246 O94907 MGI:1329040 RGD:1307313 DKK1 605189 310112 +HGNC:2892 DKK2 dickkopf WNT signaling pathway inhibitor 2 protein-coding gene gene with protein product Approved 4q25 04q25 "dickkopf (Xenopus laevis) homolog 2|dickkopf 2 homolog (Xenopus laevis)" 2000-09-01 2013-05-15 2014-11-19 27123 ENSG00000155011 OTTHUMG00000131216 uc003hyi.4 AB033208 NM_014421 CCDS3675 Q9UBU2 10570958 MGI:1890663 RGD:1308639 DKK2 605415 +HGNC:2893 DKK3 dickkopf WNT signaling pathway inhibitor 3 protein-coding gene gene with protein product Approved 11p15.3 11p15.3 "REIC|RIG" regulated in glioma "dickkopf (Xenopus laevis) homolog 3|dickkopf 3 homolog (Xenopus laevis)" 2000-09-01 2013-05-15 2014-11-19 27122 ENSG00000050165 OTTHUMG00000165709 uc001mjw.4 AF177396 NM_013253 "CCDS7808|CCDS81555" Q9UBP4 10570958 MGI:1354952 RGD:621846 DKK3 605416 +HGNC:2894 DKK4 dickkopf WNT signaling pathway inhibitor 4 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "dickkopf (Xenopus laevis) homolog 4|dickkopf homolog 4 (Xenopus laevis)" 2000-09-01 2013-05-15 2016-10-05 27121 ENSG00000104371 OTTHUMG00000164167 uc003xpb.4 AF177397 XM_017013316 CCDS6130 Q9UBT3 "10570958|11701963" MGI:2385299 RGD:1563172 DKK4 605417 +HGNC:16528 DKKL1 dickkopf like acrosomal protein 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "SGY-1|CT34" "cancer/testis antigen 34|soggy" dickkopf-like 1 2004-07-09 2016-02-15 2016-10-05 27120 ENSG00000104901 OTTHUMG00000183171 uc002pnk.4 AB047816 NM_014419 CCDS12762 Q9UK85 "10570958|15892050" MGI:1354963 RGD:1563523 DKKL1 605418 +HGNC:16593 DKKL1P1 dickkopf-like 1 pseudogene 1 pseudogene pseudogene Approved 20q11.21 20q11.21 dJ854E16.1 DKKL2 dickkopf-like 2 2001-09-17 2010-10-12 2010-10-12 2014-11-19 128848 ENSG00000215546 OTTHUMG00000032158 NG_005524 PGOHUM00000247640 +HGNC:2896 DLAT dihydrolipoamide S-acetyltransferase protein-coding gene gene with protein product Approved 11q23.1 11q23.1 PDC-E2 E2 component of pyruvate dehydrogenase complex DLTA 1989-06-30 2008-02-04 2014-11-19 1737 ENSG00000150768 OTTHUMG00000133751 uc001pmo.4 Y00978 NM_001931 CCDS8354 P10515 8102256 MGI:2385311 RGD:619859 DLAT 608770 121098 2.3.1.12 +HGNC:2897 DLC1 DLC1 Rho GTPase activating protein protein-coding gene gene with protein product Approved 8p22 08p22 "HP|ARHGAP7|STARD12|DLC-1|p122-RhoGAP" StAR-related lipid transfer (START) domain containing 12 deleted in liver cancer 1 "Rho GTPase activating proteins|StAR related lipid transfer domain containing" "721|759" 1999-06-17 2014-06-20 2016-04-25 10395 ENSG00000164741 OTTHUMG00000090825 uc003wwm.3 AF035119 "NM_182643|NM_006094" "CCDS55201|CCDS5989|CCDS5990|CCDS5991|CCDS83253" Q96QB1 "9605766|11214970" MGI:1354949 RGD:68416 DLC1 604258 +HGNC:2898 DLD dihydrolipoamide dehydrogenase protein-coding gene gene with protein product Approved 7q31.1 07q31.1 DLDH E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex "LAD|GCSL" dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex, branched chain keto acid dehydrogenase complex) 1988-05-11 2006-05-22 2016-10-05 1738 ENSG00000091140 OTTHUMG00000154813 uc003vet.5 AB209703 NM_000108 "CCDS5749|CCDS78268|CCDS78269" P09622 MGI:107450 RGD:735073 DLD 238331 121102 1.8.1.4 +HGNC:2899 DLEC1 deleted in lung and esophageal cancer 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "DLC1|CFAP81" cilia and flagella associated protein 81 1999-05-07 2016-10-05 9940 ENSG00000008226 OTTHUMG00000131085 uc003cho.2 AB020522 NM_007337 CCDS2672 Q9Y238 10213508 MGI:2443671 RGD:1561649 DLEC1 604050 +HGNC:44545 DLEC1P1 deleted in lung and esophageal cancer 1 pseudogene 1 pseudogene pseudogene Approved 3p22.2 03p22.2 2012-11-15 2012-11-15 100421153 ENSG00000230123 OTTHUMG00000156032 NG_025566 PGOHUM00000237590 +HGNC:13747 DLEU1 deleted in lymphocytic leukemia 1 other unknown Approved 13q14.2-q14.3 13q14.2-q14.3 "LEU1|XTP6|NCRNA00021|LINC00021|BCMS1" "B-cell neoplasia-associated gene with multiple splicing|non-protein coding RNA 21|long intergenic non-protein coding RNA 21" "DLB1|BCMS" deleted in lymphocytic leukemia 1 (non-protein coding) Long non-coding RNAs 788 2000-11-28 2016-07-19 2016-10-11 10301 ENSG00000176124 OTTHUMG00000016934 uc058xbn.1 Y15227 NR_002605 O43261 "9395242|11406609" DLEU1 605765 +HGNC:50496 DLEU1-AS1 DLEU1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 LINC01308 long intergenic non-protein coding RNA 1308 2014-05-09 2014-05-09 103689915 ENSG00000229323 OTTHUMG00000016932 BM264234 NR_125753 +HGNC:13748 DLEU2 deleted in lymphocytic leukemia 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 "LEU2|TRIM13OS|NCRNA00022|LINC00022|MIR15AHG" "non-protein coding RNA 22|long intergenic non-protein coding RNA 22|mir-15a-16-1 cluster host gene (non-protein coding)" "DLB2|BCMSUN|RFP2OS" "ret finger protein 2 opposite strand|deleted in lymphocytic leukemia, 2" Long non-coding RNAs 788 2000-11-28 2008-08-13 2016-10-05 8847 ENSG00000231607 OTTHUMG00000016927 uc001vdo.1 Y15228 NR_002612 "9395242|11072235" 605766 +HGNC:13225 DLEU2L deleted in lymphocytic leukemia 2-like other unknown Approved 1p31.3 01p31.3 BCMSUNL BCMS upstream neighbor-like 2001-07-09 2006-04-10 2006-04-10 2014-11-18 79469 ENSG00000116652 OTTHUMG00000008984 uc001dbg.2 AF254117 NR_002771 11072235 DLEU2L +HGNC:17567 DLEU7 deleted in lymphocytic leukemia, 7 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 FLJ44882 2005-02-22 2005-02-22 220107 ENSG00000186047 OTTHUMG00000016936 uc001vex.3 AK126830 NM_198989 "CCDS53869|CCDS76635" Q6UYE1 14706829 MGI:2447771 RGD:1305071 DLEU7 +HGNC:39966 DLEU7-AS1 DLEU7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 DLEU7 antisense RNA 1 (non-protein coding) 2011-04-18 2012-08-15 2014-11-19 100874074 ENSG00000237152 OTTHUMG00000016935 uc001vey.4 NR_046551 +HGNC:2900 DLG1 discs large MAGUK scaffold protein 1 protein-coding gene gene with protein product Approved 3q29 03q29 "SAP97|SAP-97|hdlg|DLGH1|dJ1061C18.1.1" "discs large homolog 1|presynaptic protein SAP97|synapse-associated protein 97" "discs, large homolog 1 (Drosophila)|discs large homolog 1, scribble cell polarity complex component" "Membrane associated guanylate kinases|PDZ domain containing|Scribble complex" "904|1220|1224" 1995-05-04 2016-05-24 2016-05-24 1739 ENSG00000075711 OTTHUMG00000047972 uc011bue.3 U13897 NM_004087 "CCDS3327|CCDS43194|CCDS56300|CCDS56301|CCDS75072" Q12959 "7937897|8825652" MGI:107231 RGD:2505 DLG1 601014 +HGNC:44154 DLG1-AS1 DLG1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 DLG1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100507086 ENSG00000227375 OTTHUMG00000155484 uc003fxq.4 BC039329 NR_038289 +HGNC:2901 DLG2 discs large MAGUK scaffold protein 2 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "PSD-93|PSD93|chapsyn-110|PPP1R58" protein phosphatase 1, regulatory subunit 58 "discs, large homolog 2, chapsyn-110 (Drosophila)|discs, large homolog 2 (Drosophila)|discs large homolog 2" "Protein phosphatase 1 regulatory subunits|Membrane associated guanylate kinases|PDZ domain containing" "694|904|1220" 1997-04-21 2016-05-24 2016-10-05 1740 ENSG00000150672 OTTHUMG00000134309 uc001paj.3 U32376 NM_001364 "CCDS41696|CCDS44690|CCDS44691|CCDS44692|CCDS55782|CCDS73357" Q15700 "8755482|9806853" MGI:1344351 RGD:619895 DLG2 603583 +HGNC:37132 DLG2-AS1 DLG2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q14.1 11q14.1 "PSZA11q14|SZ-1" "DLG2AS|DLG2-AS" "DLG2 antisense RNA (non-protein coding)|DLG2 antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2009-08-18 2010-11-25 2012-08-15 2014-10-22 100302690 AF525782 13130513 dlg2as +HGNC:2902 DLG3 discs large MAGUK scaffold protein 3 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "NE-Dlg|SAP102|SAP-102|NEDLG|KIAA1232|MRX90|PPP1R82" "neuroendocrine-dlg|protein phosphatase 1, regulatory subunit 82" "discs, large homolog 3 (neuroendocrine-dlg, Drosophila)|discs, large homolog 3 (Drosophila)|discs large homolog 3" "X-linked mental retardation|Protein phosphatase 1 regulatory subunits|Membrane associated guanylate kinases|PDZ domain containing" "103|694|904|1220" 1997-04-21 2016-05-24 2016-05-24 1741 ENSG00000082458 OTTHUMG00000021778 uc004dyi.3 U49089 NM_021120 "CCDS14403|CCDS43967|CCDS55439" Q92796 9598320 MGI:1888986 RGD:68423 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DLG3 DLG3 300189 159924 +HGNC:40182 DLG3-AS1 DLG3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq13.1 Xq13.1 DLG3 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100873930 ENSG00000231651 OTTHUMG00000021777 uc033ehj.2 NR_046586 +HGNC:2903 DLG4 discs large MAGUK scaffold protein 4 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "PSD-95|PSD95|SAP90|SAP-90" "discs, large homolog 4 (Drosophila)|discs large homolog 4" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 1995-11-07 2016-05-24 2016-05-24 1742 ENSG00000132535 OTTHUMG00000134327 uc010cly.4 U83192 NM_001365 "CCDS45599|CCDS45600|CCDS82050" P78352 9286702 MGI:1277959 RGD:68424 DLG4 602887 +HGNC:2904 DLG5 discs large MAGUK scaffold protein 5 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "P-dlg|KIAA0583" "discs, large homolog 5 (Drosophila)|discs large homolog 5" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 1999-02-23 2016-05-24 2016-10-05 9231 ENSG00000151208 OTTHUMG00000018548 uc001jzk.4 U61843 NM_004747 CCDS7353 Q8TDM6 9738934 MGI:1918478 RGD:1308753 DLG5 604090 +HGNC:45109 DLG5-AS1 DLG5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2013-02-15 2013-02-15 100128292 ENSG00000233871 OTTHUMG00000018547 uc057ujv.1 NR_024585 +HGNC:2905 DLGAP1 DLG associated protein 1 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 "GKAP|SAPAP1|DAP-1" "discs, large (Drosophila) homolog-associated protein 1|discs large homolog associated protein 1" 1999-02-23 2016-05-24 2016-10-05 9229 ENSG00000170579 OTTHUMG00000131537 uc002kmf.4 AB000277 XM_005258171 "CCDS11836|CCDS42406|CCDS56049|CCDS56050|CCDS56051|CCDS56052|CCDS56053|CCDS74191|CCDS77146" O14490 "9024696|9286858" MGI:1346065 RGD:620223 DLGAP1 605445 +HGNC:31676 DLGAP1-AS1 DLGAP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 "HsT914|FLJ35776" DLGAP1 antisense RNA 1 (non-protein coding) 2012-08-13 2012-08-15 2012-10-12 649446 ENSG00000177337 OTTHUMG00000177863 uc010wza.5 NR_024101 +HGNC:28146 DLGAP1-AS2 DLGAP1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 MGC11082 DLGAP1 antisense RNA 2 (non-protein coding) 2012-08-13 2012-08-15 2012-10-12 84777 ENSG00000262001 OTTHUMG00000177864 uc002kmi.4 BC005130 NR_119377 +HGNC:27317 DLGAP1-AS3 DLGAP1 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 DLGAP1 antisense RNA 3 (non-protein coding) 2012-08-13 2012-08-15 2012-10-12 201477 ENSG00000263724 OTTHUMG00000178391 uc002kml.1 NR_038895 12477932 +HGNC:44333 DLGAP1-AS4 DLGAP1 antisense RNA 4 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 DLGAP1 antisense RNA 4 (non-protein coding) 2012-08-13 2012-08-15 2012-10-12 101410534 ENSG00000263878 OTTHUMG00000178387 uc031rhf.1 "BI755422|CK005798" NR_102696 +HGNC:27586 DLGAP1-AS5 DLGAP1 antisense RNA 5 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 DLGAP1 antisense RNA 5 (non-protein coding) 2012-08-13 2012-08-15 2012-10-12 284215 ENSG00000261520 OTTHUMG00000176106 uc021ugm.2 NR_036489 +HGNC:2906 DLGAP2 DLG associated protein 2 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 DAP-2 "discs, large (Drosophila) homolog-associated protein 2|discs large homolog associated protein 2" 1999-02-23 2016-05-24 2016-10-05 9228 ENSG00000198010 OTTHUMG00000163599 uc003wpl.4 AB000275 NM_004745 "CCDS47760|CCDS75689" Q9P1A6 "9286858|10854099" MGI:2443181 RGD:620224 DLGAP2 605438 +HGNC:50467 DLGAP2-AS1 DLGAP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8p23.3 08p23.3 2014-04-30 2014-04-30 100507435 ENSG00000253267 OTTHUMG00000163600 NR_103863 +HGNC:30368 DLGAP3 DLG associated protein 3 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "SAPAP3|DAP3" "discs, large (Drosophila) homolog-associated protein 3|discs large homolog associated protein 3" 2004-03-17 2016-05-24 2016-10-05 58512 ENSG00000116544 OTTHUMG00000004049 uc057equ.1 AF131778 NM_021234 CCDS30670 O95886 "8619474|9110174" MGI:3039563 RGD:708349 DLGAP3 611413 +HGNC:24476 DLGAP4 DLG associated protein 4 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "DAP4|KIAA0964|SAPAP4" "discs, large (Drosophila) homolog-associated protein 4|discs large homolog associated protein 4" 2004-03-17 2016-05-24 2016-05-24 22839 ENSG00000080845 OTTHUMG00000032390 uc002xff.4 AF088030 NM_014902 "CCDS13274|CCDS13275" Q9Y2H0 9115257 MGI:2138865 RGD:708350 DLGAP4 616191 +HGNC:51223 DLGAP4-AS1 DLGAP4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q11.23 20q11.23 CCAT7 2014-08-08 2016-07-13 101926987 ENSG00000232907 OTTHUMG00000032391 BC039668 NR_109939 25663692 +HGNC:16864 DLGAP5 DLG associated protein 5 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 "KIAA0008|DLG1|HURP" DLG7 "discs, large homolog 7 (Drosophila)|discs, large (Drosophila) homolog-associated protein 5|discs large homolog associated protein 5" 2002-11-19 2008-05-30 2016-05-24 2016-05-24 9787 ENSG00000126787 OTTHUMG00000140310 uc001xbs.4 D13633 NM_014750 "CCDS9723|CCDS53897" Q15398 "7584026|7584028" MGI:2183453 RGD:1311247 DLGAP5 +HGNC:23945 DLGAP5P1 discs large homolog associated protein 5 pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 discs, large (Drosophila) homolog-associated protein 5 pseudogene 1 2009-12-17 2016-01-19 2016-01-19 360014 ENSG00000237195 OTTHUMG00000036007 NG_002932 12815422 PGOHUM00000233894 +HGNC:2907 DLK1 delta like non-canonical Notch ligand 1 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 "FA1|pG2|Pref-1|ZOG|Delta1" "delta-like homolog (Drosophila)|delta-like 1 homolog (Drosophila)" 1998-12-09 2016-05-16 2016-10-12 8788 ENSG00000185559 OTTHUMG00000171600 uc001yhs.5 U15979 NM_003836 "CCDS9963|CCDS81852" P80370 "8095043|7925474" MGI:94900 RGD:619931 LRG_1044|http://www.lrg-sequence.org/LRG/LRG_1044 DLK1 176290 159533 +HGNC:21113 DLK2 delta like non-canonical Notch ligand 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 MGC2487 EGFL9 "EGF-like-domain, multiple 9|delta-like 2 homolog (Drosophila)" 2003-05-20 2007-07-05 2016-05-16 2016-05-16 65989 ENSG00000171462 OTTHUMG00000014735 uc003ovb.5 AK055380 NM_023932 "CCDS4897|CCDS75461" Q6UY11 MGI:2146838 RGD:1309143 DLK2 +HGNC:2908 DLL1 delta like canonical Notch ligand 1 protein-coding gene gene with protein product Approved 6q27 06q27 "delta (Drosophila)-like 1|delta-like 1 (Drosophila)" 2000-02-11 2016-05-16 2016-05-16 28514 ENSG00000198719 OTTHUMG00000016078 uc063taz.1 AF003522 XM_005266934 CCDS5313 O00548 MGI:104659 RGD:70949 DLL1 606582 281953 +HGNC:2909 DLL3 delta like canonical Notch ligand 3 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 SCDO1 "delta (Drosophila)-like 3|delta-like 3 (Drosophila)" 2000-03-15 2016-05-16 2016-05-16 10683 ENSG00000090932 OTTHUMG00000183067 uc002olw.3 AF241373 NM_203486 "CCDS12537|CCDS12538" Q9NYJ7 "10364530|10742114" MGI:1096877 RGD:70953 DLL3 602768 121110 +HGNC:2910 DLL4 delta like canonical Notch ligand 4 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "delta-like 4 homolog (Drosophila)|delta-like 4 (Drosophila)" 2000-07-31 2016-05-16 2016-10-05 54567 ENSG00000128917 OTTHUMG00000172511 uc001zng.3 AF253468 NM_019074 CCDS45232 Q9NR61 10837024 MGI:1859388 RGD:1309740 DLL4 605185 438271 +HGNC:2911 DLST dihydrolipoamide S-succinyltransferase protein-coding gene gene with protein product Approved 14q24.3 14q24.3 Dihydrolipoyllysine-residue succinyltransferase DLTS dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex) 1989-06-30 2016-03-24 2016-10-05 1743 ENSG00000119689 OTTHUMG00000171483 uc001xqv.3 XR_001750184 CCDS9833 P36957 8009371 MGI:1926170 RGD:1359615 DLST 126063 2.3.1.61 +HGNC:2912 DLSTP1 dihydrolipoamide S-succinyltransferase pseudogene 1 pseudogene pseudogene Approved 1p31.1 01p31.1 DLSTP dihydrolipoamide S-succinyltransferase pseudogene (E2 component of 2-oxo-glutarate complex) 1994-07-22 2010-02-25 2010-02-25 2016-10-05 1744 ENSG00000181227 OTTHUMG00000009785 D29970 NG_002326 "8009371|8076640" PGOHUM00000295721 +HGNC:2914 DLX1 distal-less homeobox 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 distal-less homeo box 1 NKL subclass homeoboxes and pseudogenes 519 1994-05-24 2005-12-22 2015-08-25 1745 ENSG00000144355 OTTHUMG00000073951 uc002uhl.4 BC013010 NM_178120 "CCDS2247|CCDS33328" P56177 7907794 MGI:94901 RGD:1309593 DLX1 600029 8426 +HGNC:2915 DLX2 distal-less homeobox 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 TES-1 distal-less homeo box 2 NKL subclass homeoboxes and pseudogenes 519 1992-05-05 2005-12-22 2014-11-19 1746 ENSG00000115844 OTTHUMG00000132276 uc002uhn.4 U51003 NM_004405 CCDS2248 Q07687 1354641 MGI:94902 RGD:1304853 DLX2 126255 8427 +HGNC:50638 DLX2-AS1 DLX2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 TCONS_00003049 2014-06-02 2014-06-02 2014-06-02 104326193 ENSG00000236651 OTTHUMG00000154065 "DB036501|AA625909" NR_126376 +HGNC:2916 DLX3 distal-less homeobox 3 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 distal-less homeo box 3 NKL subclass homeoboxes and pseudogenes 519 1995-05-16 2005-12-22 2015-08-25 1747 ENSG00000064195 OTTHUMG00000161892 uc002ipy.3 NM_005220 CCDS11556 O60479 7613049 MGI:94903 RGD:1304875 DLX3 600525 8428 121113 +HGNC:2917 DLX4 distal-less homeobox 4 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "DLX8|BP1" "DLX7|DLX9" NKL subclass homeoboxes and pseudogenes 519 1996-08-07 2015-08-25 1748 ENSG00000108813 OTTHUMG00000161839 uc002ipv.4 XM_017024291 "CCDS11555|CCDS45728" Q92988 MGI:94904 RGD:1308744 DLX4 601911 8429 457562 +HGNC:2918 DLX5 distal-less homeobox 5 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 distal-less homeo box 5 NKL subclass homeoboxes and pseudogenes 519 1994-05-24 2005-12-22 2015-08-25 1749 ENSG00000105880 OTTHUMG00000154200 uc003uon.4 XM_005250185 CCDS5647 P56178 7907794 MGI:101926 RGD:2506 DLX5 600028 8430 291751 +HGNC:2919 DLX6 distal-less homeobox 6 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 distal-less homeo box 6 NKL subclass homeoboxes and pseudogenes 519 1994-05-24 2005-12-22 2016-04-25 1750 ENSG00000006377 OTTHUMG00000154201 uc022ahu.2 NM_005222 CCDS47647 P56179 7907794 MGI:101927 RGD:1561539 DLX6 600030 8431 +HGNC:37151 DLX6-AS1 DLX6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q21.3 07q21.3 "FLJ34048|Evf-2" NCRNA00212 "non-protein coding RNA 212|DLX6 antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2009-07-29 2011-11-14 2012-08-15 2014-10-22 285987 ENSG00000231764 OTTHUMG00000154198 uc003uol.4 NR_015448 16705037 MGI:2443217 evf2 +HGNC:40183 DLX6-AS2 DLX6 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 7q21.3 07q21.3 DLX6 antisense RNA 2 (non-protein coding) 2011-11-15 2012-08-15 2015-01-29 100873931 OTTHUMG00000160903 +HGNC:18291 DMAP1 DNA methyltransferase 1 associated protein 1 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "DNMAP1|FLJ11543|KIAA1425|DNMTAP1|EAF2|MEAF2|SWC4" "Myb/SANT domain containing| SRCAP complex" "532|1329" 2003-03-12 2016-10-05 55929 ENSG00000178028 OTTHUMG00000007577 uc001clq.2 AB037846 NM_019100 CCDS509 Q9NPF5 "10888872|10718198" MGI:1913483 RGD:1311295 DMAP1 605077 +HGNC:2926 DMBT1 deleted in malignant brain tumors 1 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "GP340|muclin|SALSA" salivary agglutinin 1997-09-05 2016-10-05 1755 ENSG00000187908 OTTHUMG00000019185 uc057wnp.1 NM_004406 "CCDS44490|CCDS44491|CCDS44492" Q9UGM3 "9288095|17548659" MGI:106210 RGD:61984 DMBT1 601969 +HGNC:49497 DMBT1P1 deleted in malignant brain tumors 1 pseudogene 1 pseudogene pseudogene Approved 10q26.13 10q26.13 2013-12-20 2013-12-20 375940 ENSG00000176584 OTTHUMG00000185790 NR_003570 PGOHUM00000238954 +HGNC:19026 DMBX1 diencephalon/mesencephalon homeobox 1 protein-coding gene gene with protein product Approved 1p33 01p33 PAXB OTX3 orthodenticle homolog 3 (Drosophila) PRD class homeoboxes and pseudogenes 521 2002-08-05 2004-03-30 2004-03-29 2016-10-05 127343 ENSG00000197587 OTTHUMG00000007982 uc001cpw.4 AB037699 XM_017000289 CCDS536 Q8NFW5 MGI:2153518 RGD:1308265 DMBX1 607410 8528 +HGNC:2927 DMC1 DNA meiotic recombinase 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 LIM15 "DMC1 (dosage suppressor of mck1, yeast homolog) meiosis-specific homologous recombination|DMC1 dosage suppressor of mck1 homolog, meiosis-specific homologous recombination (yeast)" 1999-10-29 2013-05-02 2014-11-19 11144 ENSG00000100206 OTTHUMG00000151088 uc003avz.3 D63882 NM_007068 "CCDS13973|CCDS63477" Q14565 "8602360|8590282|17541404" MGI:105393 RGD:1307611 DMC1 602721 +HGNC:2928 DMD dystrophin protein-coding gene gene with protein product Approved Xp21.2-p21.1 Xp21.2-p21.1 "BMD|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272" muscular dystrophy, Duchenne and Becker types MRX85 "dystrophin (muscular dystrophy, Duchenne and Becker types), includes DXS142, DXS164, DXS206, DXS230, DXS239, DXS268, DXS269, DXS270, DXS272|mental retardation, X-linked 85" "Zinc fingers ZZ-type|X-linked mental retardation" "91|103" 1986-01-01 2008-08-01 2016-10-12 1756 ENSG00000198947 OTTHUMG00000021336 uc004dda.2 AF047505 NM_004006 "CCDS14231|CCDS14232|CCDS14233|CCDS14234|CCDS48091|CCDS55394|CCDS55395|CCDS75965" P11532 "3282674|3607877|23900271" MGI:94909 RGD:2507 "Leiden Muscular Dystrophy Pages|http://www.dmd.nl|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=DMD|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=DMD_d|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DMD|LRG_199|http://www.lrg-sequence.org/LRG/LRG_199" DMD 300377 121117 +HGNC:42629 DMD-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:40184 DMD-AS2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:40185 DMD-AS3 DMD antisense RNA 3 non-coding RNA RNA, long non-coding Approved Xp21.1 Xp21.1 DMD antisense RNA 3 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100873916 ENSG00000236828 OTTHUMG00000021334 uc064ymj.1 +HGNC:24475 DMGDH dimethylglycine dehydrogenase protein-coding gene gene with protein product Approved 5q14.1 05q14.1 2004-05-12 2014-11-19 29958 ENSG00000132837 OTTHUMG00000108159 uc003kfs.5 AF111858 NM_013391 CCDS4044 Q9UI17 "10767172|11231903" MGI:1921379 RGD:620453 DMGDH 605849 244279 1.5.99.2 +HGNC:25063 DMKN dermokine protein-coding gene gene with protein product Approved 19q13.12 19q13.12 ZD52F10 2006-06-13 2016-04-25 93099 ENSG00000161249 OTTHUMG00000048101 uc002nzo.5 BC035311 NM_033317 "CCDS12463|CCDS42549|CCDS46051|CCDS46052|CCDS46053|CCDS46054|CCDS54250|CCDS54251|CCDS54252|CCDS77278|CCDS77279" Q6E0U4 16374476 MGI:1920962 RGD:1561521 DMKN +HGNC:2932 DMP1 dentin matrix acidic phosphoprotein 1 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 dentin matrix acidic phosphoprotein SIBLING family 1279 1995-08-10 2008-08-29 2016-10-05 1758 ENSG00000152592 OTTHUMG00000130598 uc003hqv.4 U34037 XM_011531705 "CCDS3623|CCDS43249" Q13316 "8586437|9177774" MGI:94910 RGD:2508 DMP1 600980 121129 +HGNC:2933 DMPK dystrophia myotonica protein kinase protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "DMK|DM1PK|MDPK|MT-PK" "dystrophia myotonica 1|DM protein kinase|myotonin protein kinase A|myotonic dystrophy associated protein kinase|thymopoietin homolog" "DM1|DM" dystrophia myotonica 1 (includes dystrophia myotonia protein kinase) 1997-10-10 2015-11-16 2016-10-05 1760 ENSG00000104936 OTTHUMG00000182334 uc002pdf.3 L19268 NM_004409 "CCDS12674|CCDS46117|CCDS46118|CCDS46119|CCDS74400" Q09013 "1546325|1546326" MGI:94906 RGD:1309825 DMPK 605377 121131 objectId:1505 2.7.11.1 +HGNC:2934 DMRT1 doublesex and mab-3 related transcription factor 1 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 "DMT1|CT154" DM domain expressed in testis 1 1998-08-13 2014-11-19 1761 ENSG00000137090 OTTHUMG00000019435 uc003zgv.5 AF130728 NM_021951 CCDS6442 Q9Y5R6 "9490411|10332030" MGI:1354733 RGD:621640 DMRT1 602424 168362 +HGNC:2935 DMRT2 doublesex and mab-3 related transcription factor 2 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 terra-like protein 1999-07-09 2014-11-19 10655 ENSG00000173253 OTTHUMG00000019437 uc064rvw.1 AF130729 NM_006557 "CCDS6444|CCDS6445" Q9Y5R5 10332030 MGI:1330307 RGD:1309047 DMRT2 604935 +HGNC:13909 DMRT3 doublesex and mab-3 related transcription factor 3 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 testis-specific protein DMRTA3 DMRT-like family A3 2000-11-24 2001-12-07 2001-12-17 2014-11-19 58524 ENSG00000064218 OTTHUMG00000019436 uc003zgw.3 AJ301581 NM_021240 CCDS6443 Q9NQL9 "11543627|10729223" MGI:2449470 RGD:1306043 DMRT3 614754 +HGNC:13826 DMRTA1 DMRT like family A1 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 DMRT-like family A1 2000-11-24 2016-01-19 2016-01-19 63951 ENSG00000176399 OTTHUMG00000019693 uc003zpp.2 AJ290954 NM_022160 CCDS6514 Q5VZB9 MGI:2653627 RGD:1309796 DMRTA1 614803 +HGNC:13908 DMRTA2 DMRT like family A2 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 DMRT-like family A2 2000-11-24 2016-01-19 2016-10-05 63950 ENSG00000142700 OTTHUMG00000007884 uc010onb.3 AJ301580 NM_032110 CCDS44141 Q96SC8 11863363 MGI:2653629 RGD:1308173 DMRTA2 614804 +HGNC:13913 DMRTB1 DMRT like family B with proline rich C-terminal 1 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 DMRT-like family B with proline-rich C-terminal, 1 2000-11-24 2015-11-23 2016-10-05 63948 ENSG00000143006 OTTHUMG00000008080 uc001cvq.2 AJ291671 NM_033067 CCDS581 Q96MA1 MGI:1927125 RGD:1560921 DMRTB1 614805 +HGNC:13910 DMRTC1 DMRT like family C1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 DMRT-like family C1 2000-11-24 2016-01-19 2016-01-19 63947 ENSG00000269502 OTTHUMG00000021820 uc004ebc.4 AJ291670 NM_033053 CCDS35333 Q5HYR2 MGI:1918137 RGD:1562908 DMRTC1 300878 +HGNC:31686 DMRTC1B DMRT like family C1B protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 DMRT-like family C1B 2007-08-03 2016-01-19 2016-10-05 728656 ENSG00000184911 OTTHUMG00000021818 uc064zxu.1 XM_006724685 CCDS43971 Q5HYR2 MGI:3639121 RGD:6500694 DMRTC1B +HGNC:13911 DMRTC2 DMRT like family C2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 DMRT-like family C2 2000-11-24 2016-01-19 2016-01-19 63946 ENSG00000142025 OTTHUMG00000182675 uc002ors.4 AJ291669 NM_001040283 CCDS33034 Q8IXT2 11863363 MGI:1918491 RGD:1583739 DMRTC2 614806 +HGNC:14603 DMTF1 cyclin D binding myb like transcription factor 1 protein-coding gene gene with protein product Approved 7q21.12 07q21.12 "DMP1|DMTF|hDMP1|MRUL" cyclin D-binding Myb-like protein cyclin D binding myb-like transcription factor 1 Myb/SANT domain containing 532 2001-02-28 2016-02-03 2016-10-05 9988 ENSG00000135164 OTTHUMG00000154135 uc003uih.3 AF084530 NM_021145 "CCDS5601|CCDS47633" Q9Y222 "10095122|24958102" MGI:1344415 RGD:70966 DMTF1 608491 +HGNC:3382 DMTN dematin actin binding protein protein-coding gene gene with protein product Approved 8p21.3 08p21.3 DMT EPB49 erythrocyte membrane protein band 4.9 (dematin) 1995-09-29 2013-05-03 2013-05-03 2016-10-05 2039 ENSG00000158856 OTTHUMG00000097087 U28389 NM_001978 "CCDS6020|CCDS47820|CCDS47821|CCDS78311" Q08495 "8341682|12011427" MGI:99670 RGD:1311419 125305 +HGNC:2936 DMWD dystrophia myotonica, WD repeat containing protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "DMR-N9|gene59|D19S593E" dystrophia myotonica-containing WD repeat motif WD repeat domain containing 362 1997-10-10 2007-02-20 2015-09-11 1762 ENSG00000185800 OTTHUMG00000169044 uc002pdj.2 L19267 NM_004943 CCDS33054 Q09019 1302022 MGI:94907 RGD:1594179 DMWD 609857 +HGNC:2937 DMXL1 Dmx like 1 protein-coding gene gene with protein product Approved 5q23.1 05q23.1 WD repeat domain containing 362 1998-04-27 2016-01-14 2016-10-05 1657 ENSG00000172869 OTTHUMG00000128898 uc010jcl.1 AJ005821 NM_005509 "CCDS4125|CCDS75289" Q9Y485 10708522 MGI:2443926 RGD:1307692 DMXL1 605671 +HGNC:2938 DMXL2 Dmx like 2 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "RC3|KIAA0856" rabconnectin 3 WD repeat domain containing 362 1998-04-27 2016-01-14 2016-01-14 23312 ENSG00000104093 OTTHUMG00000131749 uc002abf.4 AB020663 NM_015263 "CCDS10141|CCDS53945|CCDS53946" Q8TDJ6 MGI:2444630 RGD:1586163 DMXL2 612186 457490 +HGNC:2939 DNA2 DNA replication helicase/nuclease 2 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 KIAA0083 DNA2L "DNA2 DNA replication helicase 2-like (yeast)|DNA replication helicase 2 homolog (yeast)" UPF1 like RNA helicases 1169 1996-06-10 2008-01-08 2013-05-13 2016-10-05 1763 ENSG00000138346 OTTHUMG00000018352 uc057tqx.1 D42046 XM_006717680 CCDS44415 P51530 "8938459|17032657|23352259" MGI:2443732 DNA2 601810 332912 +HGNC:30539 DNAAF1 dynein axonemal assembly factor 1 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 "FLJ25330|ODA7|CILD13|swt" outer row dynein assembly 7 homolog (Chlamydomonas) LRRC50 "leucine rich repeat containing 50|dynein, axonemal, assembly factor 1|dynein (axonemal) assembly factor 1" 2005-05-26 2011-06-09 2016-06-27 2016-09-30 123872 ENSG00000154099 OTTHUMG00000128517 uc002fhl.5 BC024009 NM_178452 CCDS10943 Q8NEP3 19944405 MGI:1915520 RGD:1310542 DNAAF1 613190 218045 +HGNC:20188 DNAAF2 dynein axonemal assembly factor 2 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 "FLJ10563|KTU|PF13|CILD10" kintoun C14orf104 "chromosome 14 open reading frame 104|dynein, axonemal, assembly factor 2|dynein (axonemal) assembly factor 2" 2002-12-20 2011-06-09 2016-06-27 2016-06-27 55172 ENSG00000165506 OTTHUMG00000152331 uc001wws.4 AK001425 NM_001083908 "CCDS9691|CCDS45100" Q9NVR5 MGI:1923566 RGD:1310311 DNAAF2 612517 171068 +HGNC:30492 DNAAF3 dynein axonemal assembly factor 3 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "FLJ40069|FLJ36139|PF22|PCD" "C19orf51|CILD2" "chromosome 19 open reading frame 51|ciliary dyskinesia, primary 2|dynein, axonemal, assembly factor 3|dynein (axonemal) assembly factor 3" 2006-08-08 2012-03-09 2016-06-27 2016-06-27 352909 ENSG00000167646 OTTHUMG00000128547 uc002qjj.3 AK097388 NM_178837 "CCDS12918|CCDS58679|CCDS58680|CCDS59422" Q8N9W5 22387996 MGI:3588207 RGD:2323487 DNAAF3 614566 296690 +HGNC:26013 DNAAF5 dynein axonemal assembly factor 5 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "FLJ20397|FLJ31671|FLJ39381|FLJ25564|CILD18" HEATR2 "HEAT repeat containing 2|dynein, axonemal, assembly factor 5|dynein (axonemal) assembly factor 5" 2006-05-19 2014-12-05 2016-06-27 2016-06-27 54919 ENSG00000164818 OTTHUMG00000151416 "AL832914|AK000404|NM_017802|AK056233" NM_017802 CCDS34580 Q86Y56 "23040496|25232951" MGI:3616079 RGD:1566028 614864 315800 +HGNC:2940 DNAH1 dynein axonemal heavy chain 1 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "XLHSRF-1|DNAHC1|HDHC7|HL-11|HL11" dynein, axonemal, heavy polypeptide 1 Dyneins, axonemal 536 1995-11-15 2016-03-02 2016-10-05 25981 ENSG00000114841 OTTHUMG00000158378 uc011bef.3 U61738 NM_015512 CCDS46842 Q9P2D7 "8812413|9256245" MGI:107721 RGD:621795 DNAH1 603332 408654 +HGNC:2948 DNAH2 dynein axonemal heavy chain 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "KIAA1503|FLJ46675" DNHD3 "dynein, axonemal, heavy polypeptide 2|dynein heavy chain domain 3" Dyneins, axonemal 536 1995-11-15 2016-03-02 2016-03-02 146754 ENSG00000183914 OTTHUMG00000178020 uc060avj.1 "U83570|AK128517" NM_020877 "CCDS32551|CCDS76937" Q9P225 9256245 MGI:107731 RGD:1565087 DNAH2 603333 +HGNC:2949 DNAH3 dynein axonemal heavy chain 3 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "Dnahc3b|DLP3|Hsadhc3|DKFZp434N074" dynein, axonemal, heavy polypeptide 3 Dyneins, axonemal 536 1995-11-15 2016-03-02 2016-10-05 55567 ENSG00000158486 OTTHUMG00000090677 uc010vbe.3 U83574 NM_017539 CCDS10594 Q8TD57 "9256245|9373155" MGI:2683040 RGD:1305855 DNAH3 603334 +HGNC:2950 DNAH5 dynein axonemal heavy chain 5 protein-coding gene gene with protein product Approved 5p15.2 05p15.2 "Dnahc5|HL1|PCD|CILD3|KTGNR" dynein heavy chain 5 dynein, axonemal, heavy polypeptide 5 Dyneins, axonemal 536 1995-11-15 2016-03-02 2016-03-02 1767 ENSG00000039139 OTTHUMG00000090533 uc003jfd.4 AJ132090 NM_001369 CCDS3882 Q8TE73 "9256245|11788826" MGI:107718 RGD:1560828 DNAH5 603335 121137 +HGNC:2951 DNAH6 dynein axonemal heavy chain 6 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "Dnahc6|HL-2|FLJ37357" DNHL1 "dynein, axonemal, heavy polypeptide 6|dynein heavy chain-like 1" Dyneins, axonemal 536 1995-11-15 2016-03-02 2016-03-02 1768 ENSG00000115423 OTTHUMG00000128957 uc010fgb.3 U61736 NM_001370 CCDS46348 Q9C0G6 8812413 MGI:107744 RGD:621797 DNAH6 603336 +HGNC:18661 DNAH7 dynein axonemal heavy chain 7 protein-coding gene gene with protein product Approved 2q32.3 02q32.3 KIAA0944 dynein, axonemal, heavy polypeptide 7 "Dyneins, axonemal|EF-hand domain containing" "536|863" 2002-05-22 2016-03-02 2016-10-05 56171 ENSG00000118997 OTTHUMG00000154438 uc002utj.4 AF327442 NM_018897 CCDS42794 Q8WXX0 "9373155|11877439" "MGI:2684953|MGI:3639762" RGD:621798 DNAH7 610061 +HGNC:2952 DNAH8 dynein axonemal heavy chain 8 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 hdhc9 dynein, axonemal, heavy polypeptide 8 Dyneins, axonemal 536 1995-11-15 2016-03-02 2016-03-02 1769 ENSG00000124721 OTTHUMG00000016253 uc021yzh.2 Z83806 NM_001206927 CCDS75447 Q96JB1 9373155 MGI:107714 RGD:619986 DNAH8 603337 +HGNC:2953 DNAH9 dynein axonemal heavy chain 9 protein-coding gene gene with protein product Approved 17p12 17p12 "Dnahc9|KIAA0357|HL20|HL-20|DNAL1|DYH9" DNAH17L "dynein, axonemal, heavy polypeptide 17-like|dynein, axonemal, heavy polypeptide 9" Dyneins, axonemal 536 1997-02-05 2016-03-02 2016-03-02 1770 ENSG00000007174 OTTHUMG00000130383 uc002gne.3 U61740 NM_001372 "CCDS11160|CCDS11161" Q9NYC9 "8812413|11247663" MGI:1289279 RGD:621799 DNAH9 603330 +HGNC:2941 DNAH10 dynein axonemal heavy chain 10 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 FLJ43808 dynein, axonemal, heavy polypeptide 10 Dyneins, axonemal 536 2000-07-31 2016-03-02 2016-10-05 196385 ENSG00000197653 OTTHUMG00000154477 uc001uft.5 AJ132089 XM_005253555 CCDS9255 Q8IVF4 MGI:1860299 RGD:619988 DNAH10 605884 +HGNC:37121 DNAH10OS dynein axonemal heavy chain 10 opposite strand protein-coding gene gene with protein product Approved 12q24.31 12q24.31 FLJ45278 dynein, axonemal, heavy chain 10 opposite strand (non-protein coding) 2009-08-15 2016-03-02 2016-03-02 642797 ENSG00000250091 OTTHUMG00000162010 uc058uvm.1 AK127211 P0CZ25 19726446 +HGNC:2942 DNAH11 dynein axonemal heavy chain 11 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "Dnahc11|DPL11|CILD7|DNAHC11|DNAHBL|DNHBL" "dynein, ciliary, heavy chain 11|dynein, heavy chain beta-like" dynein, axonemal, heavy polypeptide 11 Dyneins, axonemal 536 1999-02-15 2016-03-02 2016-10-05 8701 ENSG00000105877 OTTHUMG00000152524 uc031swp.2 U83569 NM_003777 CCDS64602 Q96DT5 9256245 MGI:1100864 RGD:621088 DNAH11 603339 121134 +HGNC:2943 DNAH12 dynein axonemal heavy chain 12 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "DLP12|Dnahc3|HL-19|hdhc3|DHC3|FLJ40427|FLJ44290" "DNHD2|DNAH12L|DNAH7L" "dynein, axonemal, heavy polypeptide 12|dynein heavy chain domain 2|dynein heavy domain 2|dynein, axonemal, heavy chain 12-like|dynein, axonemal, heavy chain 7-like" Dyneins, axonemal 536 1999-02-15 2016-03-02 2016-10-05 201625 ENSG00000174844 OTTHUMG00000158598 uc032rop.2 "U53532|AK126276" NM_178504 CCDS33771 Q6ZR08 "8812413|8666668" MGI:107720 RGD:619990 DNAH12 603340 +HGNC:2944 DNAH13 entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-03-02 +HGNC:2945 DNAH14 dynein axonemal heavy chain 14 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 "Dnahc14|HL-18|HL18|DKFZp781B1548|MGC27277" C1orf67 "dynein, axonemal, heavy polypeptide 14|chromosome 1 open reading frame 67" Dyneins, axonemal 536 1997-02-05 2016-03-02 2016-10-05 127602 ENSG00000185842 OTTHUMG00000037447 uc001how.3 U61741 XM_059166 "CCDS41472|CCDS44322" Q0VDD8 8812413 MGI:2444525 DNAH14 603341 +HGNC:2946 DNAH17 dynein axonemal heavy chain 17 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "DNEL2|FLJ40457" DNAHL1 "dynein, axonemal, heavy polypeptide 17|dynein, axonemal, heavy chain like 1|dynein, axonemal, heavy like 1" Dyneins, axonemal 536 1999-02-12 2016-03-02 2016-03-02 8632 ENSG00000187775 OTTHUMG00000150216 uc010dhp.2 AJ000522 NM_173628 Q9UFH2 9545504 MGI:1917176 RGD:1563805 DNAH17 610063 +HGNC:48594 DNAH17-AS1 DNAH17 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 2013-05-21 2013-05-21 2015-02-02 100996295 ENSG00000267432 OTTHUMG00000177638 NR_102401 +HGNC:2954 DNAI1 dynein axonemal intermediate chain 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "DIC1|PCD|CILD1" dynein, axonemal, intermediate polypeptide 1 "WD repeat domain containing|Dyneins, axonemal" "362|536" 2000-06-16 2016-03-02 2016-03-02 27019 ENSG00000122735 OTTHUMG00000019825 uc033cpd.2 AF091619 NM_012144 "CCDS6557|CCDS75829" Q9UI46 "10577904|21953912" MGI:1916172 RGD:1565671 DNAI1 604366 121143 +HGNC:18744 DNAI2 dynein axonemal intermediate chain 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "CILD9|DIC2" dynein intermediate chain 2 dynein, axonemal, intermediate polypeptide 2 "WD repeat domain containing|Dyneins, axonemal" "362|536" 2002-06-12 2016-03-02 2016-10-05 64446 ENSG00000171595 OTTHUMG00000178578 uc002jkf.4 AF250288 NM_023036 "CCDS11697|CCDS58589" Q9GZS0 "11153919|21953912" MGI:2685574 RGD:1359602 DNAI2 605483 169908 +HGNC:5229 DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 protein-coding gene gene with protein product Approved 9p21.1 09p21.1 "HSPF4|hdj-2|dj-2|NEDD7" neural precursor cell expressed, developmentally down-regulated 7 HSJ2 DnaJ (Hsp40) homolog, subfamily A, member 1 DNAJ (HSP40) heat shock proteins 584 1998-03-26 2015-11-19 2016-10-05 3301 ENSG00000086061 OTTHUMG00000019760 uc003zsd.2 L08069 NM_001539 CCDS6533 P31689 "8334160|11147971" MGI:1270129 RGD:620942 DNAJA1 602837 +HGNC:39337 DNAJA1P1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 1 pseudogene pseudogene Approved 13q21.1 13q21.1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 1 2010-11-29 2015-11-19 2015-11-19 100129308 ENSG00000223717 OTTHUMG00000016999 NG_011453 PGOHUM00000248412 +HGNC:39338 DNAJA1P2 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 2 pseudogene pseudogene Approved 2q23.3 02q23.3 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 2 2010-11-29 2015-11-19 2015-11-19 100131207 ENSG00000236917 OTTHUMG00000153846 NG_021529 PGOHUM00000240391 +HGNC:39339 DNAJA1P3 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 3 pseudogene pseudogene Approved Xq22.3 Xq22.3 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 3 2010-11-29 2015-11-19 2015-11-19 644588 ENSG00000215007 OTTHUMG00000022161 NG_022628 PGOHUM00000241494 +HGNC:39340 DNAJA1P4 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 4 pseudogene pseudogene Approved 6q22.1 06q22.1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 4 2010-11-29 2015-11-19 2015-11-19 728614 ENSG00000218089 OTTHUMG00000016197 NG_022322 PGOHUM00000243335 +HGNC:39341 DNAJA1P5 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudogene pseudogene Approved 1p21.1 01p21.1 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 5 2010-11-29 2015-11-19 2015-11-19 94236 ENSG00000162699 OTTHUMG00000010945 NR_033424 DNAJA1P5 PGOHUM00000244822 +HGNC:39342 DNAJA1P6 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 6 pseudogene pseudogene Approved 22q11.21 22q11.21 DnaJ (Hsp40) homolog, subfamily A, member 1 pseudogene 6 2010-11-29 2015-11-19 2015-11-19 100421542 ENSG00000228045 OTTHUMG00000150091 NG_027411 PGOHUM00000246215 +HGNC:14884 DNAJA2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding gene gene with protein product Approved 16q11.2 16q11.2 "HIRIP4|DNAJ|CPR3|DNJ3" DnaJ (Hsp40) homolog, subfamily A, member 2 DNAJ (HSP40) heat shock proteins 584 2001-03-09 2015-11-19 2016-10-05 10294 ENSG00000069345 OTTHUMG00000133104 uc002eeo.3 AF116720 NM_005880 CCDS10726 O60884 "9710638|11147971" MGI:1931882 RGD:71001 DNAJA2 611322 +HGNC:11808 DNAJA3 DnaJ heat shock protein family (Hsp40) member A3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 hTid-1 TID1 DnaJ (Hsp40) homolog, subfamily A, member 3 DNAJ (HSP40) heat shock proteins 584 1999-01-29 2015-11-19 2015-11-19 9093 ENSG00000103423 OTTHUMG00000129470 uc002cwk.4 AF061749 NM_005147 "CCDS10515|CCDS45400|CCDS66930" Q96EY1 9683573 MGI:1933786 RGD:1306527 DNAJA3 608382 +HGNC:14885 DNAJA4 DnaJ heat shock protein family (Hsp40) member A4 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 PRO1472 DnaJ (Hsp40) homolog, subfamily A, member 4 DNAJ (HSP40) heat shock proteins 584 2001-03-09 2015-11-19 2016-10-05 55466 ENSG00000140403 OTTHUMG00000143733 uc059mcv.1 AF116663 NM_018602 "CCDS10299|CCDS45316|CCDS45317" Q8WW22 11147971 MGI:1927638 RGD:1310035 DNAJA4 +HGNC:5270 DNAJB1 DnaJ heat shock protein family (Hsp40) member B1 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "Hsp40|Sis1|RSPH16B" radial spoke 16 homolog B (Chlamydomonas) HSPF1 DnaJ (Hsp40) homolog, subfamily B, member 1 DNAJ (HSP40) heat shock proteins 584 1996-10-02 2015-11-19 2015-11-19 3337 ENSG00000132002 OTTHUMG00000183289 uc002myz.2 D49547 NM_006145 "CCDS12312|CCDS74295" P25685 "8975727|8250930" MGI:1931874 RGD:1304725 DNAJB1 604572 404128 +HGNC:24988 DNAJB1P1 DnaJ heat shock protein family (Hsp40) member B1 pseudogene 1 pseudogene pseudogene Approved 2q32.3 02q32.3 psiHSP40 DNAJB1P "DnaJ (Hsp40) homolog, subfamily B, member 1 pseudogene|DnaJ (Hsp40) homolog, subfamily B, member 1 pseudogene 1" 2007-07-27 2010-02-25 2015-11-19 2016-10-05 171221 ENSG00000213946 OTTHUMG00000154320 NG_001318 11916264 PGOHUM00000240463 +HGNC:5228 DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 protein-coding gene gene with protein product Approved 2q35 02q35 "HSPF3|CMT2T" HSJ1 DnaJ (Hsp40) homolog, subfamily B, member 2 DNAJ (HSP40) heat shock proteins 584 1997-08-15 2015-11-19 2015-11-19 3300 ENSG00000135924 OTTHUMG00000133134 uc002vkx.2 NM_006736 "CCDS2439|CCDS46519" P25686 "1599432|10516435" MGI:1928739 RGD:1591035 DNAJB2 604139 317743 +HGNC:32397 DNAJB3 DnaJ heat shock protein family (Hsp40) member B3 other unknown Approved 2q37.1 02q37.1 HCG3 DnaJ (Hsp40) homolog, subfamily B, member 3 DNAJ (HSP40) heat shock proteins 584 2008-06-17 2015-11-19 2016-10-05 414061 ENSG00000227802 OTTHUMG00000059034 NM_001001394 Q8WWF6 RGD:1594215 +HGNC:14886 DNAJB4 DnaJ heat shock protein family (Hsp40) member B4 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 HLJ1 DnaJ (Hsp40) homolog, subfamily B, member 4 DNAJ (HSP40) heat shock proteins 584 2001-03-09 2015-11-19 2015-11-19 11080 ENSG00000162616 OTTHUMG00000040905 uc001dij.4 U40992 NM_007034 CCDS684 Q9UDY4 "9546042|11147971" MGI:1914285 RGD:1305826 DNAJB4 611327 +HGNC:14887 DNAJB5 DnaJ heat shock protein family (Hsp40) member B5 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 Hsc40 DnaJ (Hsp40) homolog, subfamily B, member 5 DNAJ (HSP40) heat shock proteins 584 2001-03-09 2015-11-19 2016-10-05 25822 ENSG00000137094 OTTHUMG00000019840 uc003zvt.4 AF088982 XM_011517842 "CCDS35007|CCDS47959|CCDS47960" O75953 "10570961|11147971" MGI:1930018 RGD:1307453 DNAJB5 611328 +HGNC:49846 DNAJB5-AS1 DNAJB5 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9p13.3 09p13.3 2014-03-14 2014-03-14 101926900 ENSG00000281491 OTTHUMG00000189564 DA679664 NR_109756 +HGNC:50449 DNAJB5P1 DnaJ heat shock protein family (Hsp40) member B5 pseudogene 1 pseudogene pseudogene Approved 9q21.2 09q21.2 DnaJ (Hsp40) homolog, subfamily B, member 5 pseudogene 1 2014-04-30 2014-04-30 2015-11-19 2015-11-19 100421411 ENSG00000230335 OTTHUMG00000020048 NG_023835 PGOHUM00000236217 +HGNC:14888 DNAJB6 DnaJ heat shock protein family (Hsp40) member B6 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 MRJ LGMD1D "limb girdle muscular dystrophy 1D (autosomal dominant)|DnaJ (Hsp40) homolog, subfamily B, member 6" DNAJ (HSP40) heat shock proteins 584 2001-03-09 2015-11-19 2015-11-19 10049 ENSG00000105993 OTTHUMG00000157242 uc003wnk.4 AB014888 XM_017011633 "CCDS5946|CCDS47755" O75190 "10319584|9915854|22366786" MGI:1344381 RGD:1308207 DNAJB6 611332 296684 +HGNC:24986 DNAJB7 DnaJ heat shock protein family (Hsp40) member B7 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 HSC3 DnaJ (Hsp40) homolog, subfamily B, member 7 DNAJ (HSP40) heat shock proteins 584 2004-01-05 2015-11-19 2015-11-19 150353 ENSG00000172404 OTTHUMG00000151202 uc003azj.4 AF085232 NM_145174 CCDS14008 Q7Z6W7 12477932 MGI:1914012 RGD:1589047 DNAJB7 611336 +HGNC:23699 DNAJB8 DnaJ heat shock protein family (Hsp40) member B8 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "MGC33884|CT156" DnaJ (Hsp40) homolog, subfamily B, member 8 DNAJ (HSP40) heat shock proteins 584 2003-12-02 2015-11-19 2015-11-19 165721 ENSG00000179407 OTTHUMG00000159690 uc003ekk.3 NM_153330 CCDS3048 Q8NHS0 MGI:1922801 RGD:1561981 DNAJB8 611337 +HGNC:41029 DNAJB8-AS1 DNAJB8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 DNAJB8 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 285224 ENSG00000242049 OTTHUMG00000159687 uc003ekl.1 NR_037890 +HGNC:6968 DNAJB9 DnaJ heat shock protein family (Hsp40) member B9 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 MDG1 DnaJ (Hsp40) homolog, subfamily B, member 9 DNAJ (HSP40) heat shock proteins 584 1997-08-18 2015-11-19 2016-10-05 4189 ENSG00000128590 OTTHUMG00000154866 uc003vfn.4 AB026908 NM_012328 CCDS5752 Q9UBS3 "9533036|11147971" MGI:1351618 RGD:3070 DNAJB9 602634 +HGNC:14889 DNAJB11 DnaJ heat shock protein family (Hsp40) member B11 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "EDJ|HEDJ|ERdj3" DnaJ (Hsp40) homolog, subfamily B, member 11 DNAJ (HSP40) heat shock proteins 584 2001-03-09 2015-11-19 2016-10-05 51726 ENSG00000090520 OTTHUMG00000156614 uc003fqi.4 AB028859 NM_016306 CCDS3277 Q9UBS4 "10827079|11147971" MGI:1915088 RGD:1307373 DNAJB11 611341 +HGNC:14891 DNAJB12 DnaJ heat shock protein family (Hsp40) member B12 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "DJ10|FLJ20027" DnaJ (Hsp40) homolog, subfamily B, member 12 DNAJ (HSP40) heat shock proteins 584 2001-03-09 2015-11-19 2016-10-05 54788 ENSG00000148719 OTTHUMG00000018436 uc057tyc.1 AK000034 XR_246094 CCDS7316 Q9NXW2 11147971 MGI:1931881 RGD:1359677 DNAJB12 608376 +HGNC:30718 DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "TSARG6|RSPH16A" radial spoke 16 homolog A (Chlamydomonas) "DnaJ (Hsp40) related, subfamily B, member 13|DnaJ (Hsp40) homolog, subfamily B, member 13" DNAJ (HSP40) heat shock proteins 584 2005-07-01 2015-11-19 2016-10-05 374407 ENSG00000187726 OTTHUMG00000168093 uc001ouo.3 AF516185 NM_153614 CCDS8227 P59910 MGI:1916637 RGD:1359131 DNAJB13 610263 464155 +HGNC:25881 DNAJB14 DnaJ heat shock protein family (Hsp40) member B14 protein-coding gene gene with protein product Approved 4q23 04q23 FLJ14281 DnaJ (Hsp40) homolog, subfamily B, member 14 DNAJ (HSP40) heat shock proteins 584 2005-06-30 2015-11-19 2015-11-19 79982 ENSG00000164031 OTTHUMG00000131049 uc003hvl.5 BC022248 NM_001031723.2 "CCDS34035|CCDS75171" Q8TBM8 MGI:1917854 RGD:1591949 DNAJB14 +HGNC:20090 DNAJC1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 "DNAJL1|ERdj1|MTJ1" DnaJ (Hsp40) homolog, subfamily C, member 1 "Myb/SANT domain containing|DNAJ (HSP40) heat shock proteins" "532|584" 2002-12-17 2015-11-19 2016-10-05 64215 ENSG00000136770 OTTHUMG00000017800 uc001irc.4 AK026062 NM_022365 CCDS7136 Q96KC8 MGI:103268 RGD:2322144 DNAJC1 611207 +HGNC:13192 DNAJC2 DnaJ heat shock protein family (Hsp40) member C2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MPP11|MPHOSPH11|ZUO1|zuotin" ZRF1 "zuotin related factor 1|DnaJ (Hsp40) homolog, subfamily C, member 2" "Myb/SANT domain containing|DNAJ (HSP40) heat shock proteins" "532|584" 2000-05-12 2008-07-01 2015-11-19 2016-10-05 27000 ENSG00000105821 OTTHUMG00000157202 uc003vbo.4 X98260 XM_011516028 "CCDS43628|CCDS47679" Q99543 8885239 MGI:99470 RGD:620524 DNAJC2 605502 +HGNC:9439 DNAJC3 DnaJ heat shock protein family (Hsp40) member C3 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "P58|P58IPK|HP58|ERdj6" "interferon-induced, double-stranded RNA-activated protein kinase inhibitor|protein kinase inhibitor of 58 kDa|endoplasmic reticulum DNA J domain-containing protein 6" PRKRI DnaJ (Hsp40) homolog, subfamily C, member 3 "DNAJ (HSP40) heat shock proteins|Tetratricopeptide repeat domain containing" "584|769" 1995-09-20 2015-11-19 2016-10-05 5611 ENSG00000102580 OTTHUMG00000017227 uc001vmq.3 U28424 XM_011521104 CCDS9479 Q13217 "7511204|8824806" MGI:107373 RGD:708518 DNAJC3 601184 449981 +HGNC:39808 DNAJC3-AS1 DNAJC3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 13q32.1 13q32.1 "DNAJC3 antisense RNA 1 (non-protein coding)|DNAJC3 antisense RNA 1" 2011-03-29 2012-10-17 2014-11-18 100289274 ENSG00000247400 OTTHUMG00000166152 uc001vmo.5 NR_132117 +HGNC:5271 DNAJC4 DnaJ heat shock protein family (Hsp40) member C4 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 MCG18 HSPF2 DnaJ (Hsp40) homolog, subfamily C, member 4 DNAJ (HSP40) heat shock proteins 584 1997-04-21 2015-11-19 2016-10-05 3338 ENSG00000110011 OTTHUMG00000167792 uc001nys.4 AF012106 NM_005528 "CCDS41666|CCDS76424" Q9NNZ3 "9473517|11147971" MGI:1927346 RGD:1308693 DNAJC4 604189 +HGNC:16235 DNAJC5 DnaJ heat shock protein family (Hsp40) member C5 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FLJ00118|FLJ13070|DNAJC5A" CLN4 "ceroid-lipofuscinosis, neuronal 4 (Kufs disease)|DnaJ (Hsp40) homolog, subfamily C, member 5" DNAJ (HSP40) heat shock proteins 584 2001-07-17 2015-11-19 2016-10-12 80331 ENSG00000101152 OTTHUMG00000033007 uc002yhf.4 NM_025219 CCDS13546 Q9H3Z4 MGI:892995 "Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/|LRG_831|http://www.lrg-sequence.org/LRG/LRG_831" DNAJC5 611203 279781 +HGNC:24138 DNAJC5B DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding gene gene with protein product Approved 8q13.1 08q13.1 "MGC26226|CSP-beta" DnaJ (Hsp40) homolog, subfamily C, member 5 beta DNAJ (HSP40) heat shock proteins 584 2004-03-16 2015-11-19 2015-11-19 85479 ENSG00000147570 OTTHUMG00000164470 uc003xvs.2 AF368276 NM_033105 CCDS6183 Q9UF47 12477932 MGI:1913576 RGD:1562486 DNAJC5B 613945 +HGNC:24844 DNAJC5G DnaJ heat shock protein family (Hsp40) member C5 gamma protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "FLJ40417|CSP-gamma" DnaJ (Hsp40) homolog, subfamily C, member 5 gamma DNAJ (HSP40) heat shock proteins 584 2004-03-16 2015-11-19 2016-10-05 285126 ENSG00000163793 OTTHUMG00000097079 uc002rjl.2 AF368277 NM_173650 "CCDS1744|CCDS77397" Q8N7S2 MGI:3045263 RGD:1307426 DNAJC5G 613946 +HGNC:15469 DNAJC6 DnaJ heat shock protein family (Hsp40) member C6 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "KIAA0473|PARK19" auxilin DnaJ (Hsp40) homolog, subfamily C, member 6 "DNAJ (HSP40) heat shock proteins|C2 tensin-type domain containing" "584|837" 2001-03-30 2015-11-19 2015-11-19 9829 ENSG00000116675 OTTHUMG00000009066 uc001dcd.3 AB007942 NM_001256864 "CCDS30739|CCDS58004|CCDS58005" O75061 "11147971|22563501" MGI:1919935 RGD:1309900 DNAJC6 608375 356123 +HGNC:12392 DNAJC7 DnaJ heat shock protein family (Hsp40) member C7 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 TPR2 TTC2 DnaJ (Hsp40) homolog, subfamily C, member 7 "DNAJ (HSP40) heat shock proteins|Tetratricopeptide repeat domain containing" "584|769" 1997-12-12 2015-11-19 2015-11-19 7266 ENSG00000168259 OTTHUMG00000180862 uc002hyo.4 U46571 XM_011525167 "CCDS45677|CCDS45678" Q99615 "8836031|11147971" MGI:1928373 RGD:1303226 DNAJC7 601964 +HGNC:15470 DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 SPF31 DnaJ (Hsp40) homolog, subfamily C, member 8 DNAJ (HSP40) heat shock proteins 584 2001-03-30 2015-11-19 2016-10-05 22826 ENSG00000126698 OTTHUMG00000003538 uc001bpn.4 AF083190 NM_014280 CCDS41292 O75937 11147971 MGI:1915848 RGD:1306024 DNAJC8 +HGNC:19928 DNAJC8P1 DnaJ heat shock protein family (Hsp40) member C8 pseudogene 1 pseudogene pseudogene Approved 14q13.2 14q13.2 DnaJ (Hsp40) homolog, subfamily C, member 8 pseudogene 1 2003-01-13 2015-11-19 2015-11-19 319111 ENSG00000259022 OTTHUMG00000171063 NG_002493 PGOHUM00000248133 +HGNC:19123 DNAJC9 DnaJ heat shock protein family (Hsp40) member C9 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "JDD1|SB73" DnaJ (Hsp40) homolog, subfamily C, member 9 DNAJ (HSP40) heat shock proteins 584 2002-08-16 2015-11-19 2016-10-05 23234 ENSG00000213551 OTTHUMG00000018461 uc010qkg.2 AF327347 NM_015190 CCDS7322 Q8WXX5 MGI:1915326 RGD:1305009 DNAJC9 611206 +HGNC:31432 DNAJC9-AS1 DNAJC9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.2 10q22.2 bA537A6.3 C10orf103 "chromosome 10 open reading frame 103|DNAJC9 antisense RNA 1 (non-protein coding)" 2004-05-27 2012-04-30 2012-08-15 2012-10-12 414245 ENSG00000236756 OTTHUMG00000018460 uc021ptm.2 BC043233 NR_038373 A6NH13 DNAJC9-AS1 +HGNC:24637 DNAJC10 DnaJ heat shock protein family (Hsp40) member C10 protein-coding gene gene with protein product Approved 2q32.1 02q32.1 "ERdj5|PDIA19" protein disulfide isomerase family A, member 19 DnaJ (Hsp40) homolog, subfamily C, member 10 "DNAJ (HSP40) heat shock proteins|Protein disulfide isomerases" "584|692" 2004-04-20 2015-11-19 2015-11-19 54431 ENSG00000077232 OTTHUMG00000154209 uc002uow.3 NM_018981 "CCDS33345|CCDS74613" Q8IXB1 "12411443|12446677" MGI:1914111 RGD:1307813 DNAJC10 607987 +HGNC:25570 DNAJC11 DnaJ heat shock protein family (Hsp40) member C11 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 FLJ10737 DnaJ (Hsp40) homolog, subfamily C, member 11 DNAJ (HSP40) heat shock proteins 584 2004-06-03 2015-11-19 2016-10-05 55735 ENSG00000007923 OTTHUMG00000001443 uc001aof.3 AF306695 NM_018198 CCDS87 Q9NVH1 12964007 MGI:2443386 RGD:1307731 DNAJC11 614827 +HGNC:28908 DNAJC12 DnaJ heat shock protein family (Hsp40) member C12 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 JDP1 J domain protein 1 DnaJ (Hsp40) homolog, subfamily C, member 12 DNAJ (HSP40) heat shock proteins 584 2004-04-15 2015-11-19 2015-11-19 56521 ENSG00000108176 OTTHUMG00000018339 uc001jnb.4 AF176012 NM_021800 "CCDS7271|CCDS7272" Q9UKB3 10760603 MGI:1353428 RGD:1591898 DNAJC12 606060 +HGNC:30343 DNAJC13 DnaJ heat shock protein family (Hsp40) member C13 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "RME8|KIAA0678" DnaJ (Hsp40) homolog, subfamily C, member 13 DNAJ (HSP40) heat shock proteins 584 2004-03-17 2015-11-19 2015-11-19 23317 ENSG00000138246 OTTHUMG00000159674 uc003eor.4 AB014578 NM_015268 CCDS33857 O75165 12438707 MGI:2676368 RGD:1308046 DNAJC13 614334 400443 +HGNC:24581 DNAJC14 DnaJ heat shock protein family (Hsp40) member C14 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "DNAJ|DRIP78|HDJ3|LIP6|FLJ32792" DnaJ (Hsp40) homolog, subfamily C, member 14 DNAJ (HSP40) heat shock proteins 584 2004-03-17 2015-11-19 2016-10-05 85406 ENSG00000135392 OTTHUMG00000170427 uc058pbx.1 AF141342 NM_032364 CCDS8894 Q6Y2X3 "11331877|11984006" MGI:1921580 RGD:620489 DNAJC14 606092 +HGNC:20325 DNAJC15 DnaJ heat shock protein family (Hsp40) member C15 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 MCJ DNAJD1 "DnaJ (Hsp40) homolog, subfamily D, member 1|DnaJ (Hsp40) homolog, subfamily C, member 15" DNAJ (HSP40) heat shock proteins 584 2003-04-10 2005-06-30 2015-11-19 2016-10-05 29103 ENSG00000120675 OTTHUMG00000016813 uc001uyy.4 AF126743 NM_013238 CCDS9388 Q9Y5T4 11358853 MGI:1913398 RGD:1307154 DNAJC15 615339 +HGNC:29157 DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 KIAA0962 DnaJ (Hsp40) homolog, subfamily C, member 16 DNAJ (HSP40) heat shock proteins 584 2005-06-30 2015-11-19 2016-10-05 23341 ENSG00000116138 OTTHUMG00000002358 uc001aws.4 AB023179 NM_015291 "CCDS30606|CCDS72710" Q9Y2G8 MGI:2442146 RGD:1359395 DNAJC16 +HGNC:25556 DNAJC17 DnaJ heat shock protein family (Hsp40) member C17 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 FLJ10634 DnaJ (Hsp40) homolog, subfamily C, member 17 "DNAJ (HSP40) heat shock proteins|RNA binding motif containing" "584|725" 2005-06-30 2015-11-19 2015-11-19 55192 ENSG00000104129 OTTHUMG00000130065 uc001zms.3 AK001496 NM_018163 CCDS10065 Q9NVM6 12477932 MGI:1916658 RGD:1308015 DNAJC17 616844 +HGNC:28429 DNAJC18 DnaJ heat shock protein family (Hsp40) member C18 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 MGC29463 DnaJ (Hsp40) homolog, subfamily C, member 18 DNAJ (HSP40) heat shock proteins 584 2005-06-30 2005-08-09 2015-11-19 2015-11-19 202052 ENSG00000170464 OTTHUMG00000129225 uc003len.4 AK024054 NM_152686 CCDS4214 Q9H819 MGI:1923844 RGD:1310237 DNAJC18 +HGNC:30528 DNAJC19 DnaJ heat shock protein family (Hsp40) member C19 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "TIMM14|Tim14|Pam18" DnaJ (Hsp40) homolog, subfamily C, member 19 DNAJ (HSP40) heat shock proteins 584 2005-07-28 2015-11-19 2016-10-12 131118 ENSG00000205981 OTTHUMG00000158180 uc003fkt.4 NM_145261 "CCDS33895|CCDS54684" Q96DA6 19564938 MGI:1914963 RGD:1560220 LRG_743|http://www.lrg-sequence.org/LRG/LRG_743 DNAJC19 608977 168069 +HGNC:45064 DNAJC19P1 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 1 pseudogene pseudogene Approved 10q21.3 10q21.3 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 1 2013-02-07 2015-11-19 2015-11-19 100129853 ENSG00000237141 OTTHUMG00000018336 NG_030118 PGOHUM00000238823 +HGNC:45065 DNAJC19P2 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 2 pseudogene pseudogene Approved 19q13.2 19q13.2 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 2 2013-02-07 2015-11-19 2015-11-19 100861445 ENSG00000269266 OTTHUMG00000182626 NG_032014 PGOHUM00000234323 +HGNC:45066 DNAJC19P3 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 3 pseudogene pseudogene Approved 19q13.2 19q13.2 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 3 2013-02-07 2015-11-19 2015-11-19 100861443 ENSG00000268997 OTTHUMG00000182636 NG_032013 PGOHUM00000234324 +HGNC:45067 DNAJC19P4 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 4 pseudogene pseudogene Approved 3p26.2 03p26.2 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 4 2013-02-07 2015-11-19 2015-11-19 106480691 ENSG00000225310 OTTHUMG00000154879 NG_043338 PGOHUM00000237521 +HGNC:45068 DNAJC19P5 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 5 pseudogene pseudogene Approved 2q31.2 02q31.2 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 5 2013-02-07 2015-11-19 2015-11-19 100861453 ENSG00000225808 OTTHUMG00000154139 NG_032016 PGOHUM00000240440 +HGNC:45069 DNAJC19P6 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 6 pseudogene pseudogene Approved 6q15 06q15 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 6 2013-02-07 2015-11-19 2015-11-19 100861449 ENSG00000220871 OTTHUMG00000015206 NG_032015 PGOHUM00000243707 +HGNC:45070 DNAJC19P7 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 7 pseudogene pseudogene Approved 1p32.3 01p32.3 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 7 2013-02-07 2015-11-19 2015-11-19 100861458 ENSG00000237663 OTTHUMG00000008060 NG_032018 PGOHUM00000244030 +HGNC:45071 DNAJC19P8 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 8 pseudogene pseudogene Approved 1q44 01q44 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 8 2013-02-07 2015-11-19 2015-11-19 100861455 ENSG00000232793 OTTHUMG00000040078 NG_032017 PGOHUM00000244527 +HGNC:45072 DNAJC19P9 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 9 pseudogene pseudogene Approved 14q21.2 14q21.2 DnaJ (Hsp40) homolog, subfamily C, member 19 pseudogene 9 2013-02-07 2015-11-19 2015-11-19 644589 ENSG00000258608 OTTHUMG00000170808 NG_030241 PGOHUM00000248154 +HGNC:27030 DNAJC21 DnaJ heat shock protein family (Hsp40) member C21 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "GS3|DNAJA5|JJJ1" JJJ1 DnaJ domain protein homolog (S. cerevisiae) DnaJ (Hsp40) homolog, subfamily C, member 21 DNAJ (HSP40) heat shock proteins 584 2007-11-19 2015-11-19 2015-11-19 134218 ENSG00000168724 OTTHUMG00000074103 uc003jjc.4 NM_194283 "CCDS3907|CCDS34144" Q5F1R6 15067379 MGI:1925371 RGD:621729 DNAJC21 617048 +HGNC:25802 DNAJC22 DnaJ heat shock protein family (Hsp40) member C22 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "wus|FLJ13236" wurst homolog (Drosophila) DnaJ (Hsp40) homolog, subfamily C, member 22 DNAJ (HSP40) heat shock proteins 584 2008-06-04 2008-07-08 2015-11-19 2015-11-19 79962 ENSG00000178401 OTTHUMG00000169487 uc001rub.4 AK055747 NM_024902 CCDS8785 Q8N4W6 17558392 MGI:1920028 RGD:1311098 DNAJC22 +HGNC:26979 DNAJC24 DnaJ heat shock protein family (Hsp40) member C24 protein-coding gene gene with protein product Approved 11p13 11p13 JJJ3 "ZCSL3|DPH4" "zinc finger, CSL-type containing 3|DPH4 homolog (JJJ3, S. cerevisiae)|DPH4, JJJ3 homolog (S. cerevisiae)|DnaJ (Hsp40) homolog, subfamily C, member 24" DNAJ (HSP40) heat shock proteins 584 2004-07-14 2008-07-03 2015-11-19 2016-10-05 120526 ENSG00000170946 OTTHUMG00000133712 uc001msx.4 AL833128 NM_181706 CCDS7873 Q6P3W2 15485916 MGI:1919522 RGD:1564710 DNAJC24 611072 +HGNC:34187 DNAJC25 DnaJ heat shock protein family (Hsp40) member C25 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 bA16L21.2.1 DnaJ (Hsp40) homolog, subfamily C , member 25 DNAJ (HSP40) heat shock proteins 584 2008-06-17 2015-11-19 2015-11-19 548645 ENSG00000059769 OTTHUMG00000020491 uc004bfl.3 NM_001015882 CCDS43862 Q9H1X3 MGI:1919679 RGD:1561488 DNAJC25 +HGNC:37501 DNAJC25-GNG10 DNAJC25-GNG10 readthrough other readthrough Approved 9q31.3 09q31.3 2009-11-05 2014-11-19 552891 ENSG00000244115 OTTHUMG00000150303 uc004bfn.4 NM_004125.2 DNAJC25-GNG10 +HGNC:30290 DNAJC27 DnaJ heat shock protein family (Hsp40) member C27 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 RabJS RBJ "rab and DnaJ domain containing|DnaJ (Hsp40) homolog, subfamily C, member 27" DNAJ (HSP40) heat shock proteins 584 2007-07-31 2008-08-20 2015-11-19 2015-11-19 51277 ENSG00000115137 OTTHUMG00000125524 uc002rft.2 NM_016544 "CCDS1716|CCDS74493" Q9NZQ0 14980719 MGI:2443036 RGD:1564414 DNAJC27 613527 +HGNC:42943 DNAJC27-AS1 DNAJC27 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p23.3 02p23.3 DNAJC27 antisense RNA 1 (non-protein coding) 2011-09-07 2012-08-15 2012-10-12 729723 ENSG00000224165 OTTHUMG00000151981 uc061hen.1 NR_034113 +HGNC:1297 DNAJC28 DnaJ heat shock protein family (Hsp40) member C28 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 C21orf78 Orf28 C21orf55 "chromosome 21 open reading frame 55|DnaJ (Hsp40) homolog, subfamily C, member 28" DNAJ (HSP40) heat shock proteins 584 2000-05-23 2008-06-17 2015-11-19 2015-11-19 54943 ENSG00000177692 OTTHUMG00000065531 uc061zqn.1 AK000468 NM_001320746 CCDS13626 Q9NX36 MGI:2181053 RGD:1359589 DNAJC28 +HGNC:16410 DNAJC30 DnaJ heat shock protein family (Hsp40) member C30 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 WBSCR18 "Williams Beuren syndrome chromosome region 18|DnaJ (Hsp40) homolog, subfamily C, member 30" DNAJ (HSP40) heat shock proteins 584 2001-08-24 2008-06-17 2015-11-19 2015-11-19 84277 ENSG00000176410 OTTHUMG00000023290 uc003tys.2 AF412025 NM_032317 CCDS5556 Q96LL9 12073013 MGI:1913364 RGD:1595783 DNAJC30 +HGNC:23247 DNAL1 dynein axonemal light chain 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "MGC12435|1700010H15RiK|CILD16" C14orf168 chromosome 14 open reading frame 168 2003-10-30 2006-09-04 2016-03-02 2016-03-02 83544 ENSG00000119661 OTTHUMG00000171642 uc001xoq.5 BC005343 NM_031427 "CCDS45134|CCDS55928" Q4LDG9 15845866 MGI:1921462 RGD:1591349 DNAL1 610062 268087 +HGNC:2955 DNAL4 dynein axonemal light chain 4 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "dJ327J16|PIG27" "dynein, axonemal, light polypeptide 4|dynein, axonemal, light 4" Dyneins, axonemal 536 1999-10-19 2016-03-02 2016-03-02 10126 ENSG00000100246 OTTHUMG00000151025 uc003awj.4 AL035366 NM_005740 CCDS13979 O96015 10591208 MGI:1859217 RGD:1309099 DNAL4 610565 +HGNC:14353 DNALI1 dynein axonemal light intermediate chain 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "P28|hp28|dJ423B22.5" "inner dynein arm, homolog of clamydomonas|dJ423B22.5 (axonemal dynein light chain (hp28))" dynein, axonemal, light intermediate polypeptide 1 Dyneins, axonemal 536 2002-06-12 2016-03-02 2016-10-05 7802 ENSG00000163879 OTTHUMG00000004222 uc001cbj.3 AF006386 NM_003462 CCDS420 O14645 9284741 MGI:1922813 RGD:1309260 DNALI1 602135 +HGNC:2956 DNASE1 deoxyribonuclease 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 DNL1 deoxyribonuclease I 1992-07-08 2016-07-18 2016-07-18 1773 ENSG00000213918 OTTHUMG00000129426 uc002cvu.4 XM_017022992 CCDS10507 P24855 2349940 MGI:103157 RGD:2510 DNASE1 125505 353586 3.1.21.1 +HGNC:2957 DNASE1L1 deoxyribonuclease 1 like 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "DNAS1L1|XIB|DNASEX" DNase X DNL1L deoxyribonuclease I-like 1 1995-05-09 2016-07-18 2016-07-18 1774 ENSG00000013563 OTTHUMG00000033188 uc033fbl.1 L40817 XM_017029332 CCDS14747 P49184 "8541839|8654957" MGI:109628 RGD:1359588 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DNASE1L1 DNASE1L1 300081 +HGNC:2958 DNASE1L2 deoxyribonuclease 1 like 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 DNAS1L2 deoxyribonuclease I like 2 1997-05-15 2016-07-18 2016-07-18 1775 ENSG00000167968 OTTHUMG00000177086 uc002cpo.4 U62647 NM_001374 CCDS42105 Q92874 "9205125|1577479" MGI:1913955 RGD:1583566 DNASE1L2 602622 +HGNC:2959 DNASE1L3 deoxyribonuclease 1 like 3 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "DNAS1L3|LSD" DNase gamma deoxyribonuclease I like 3 1997-05-15 2016-07-18 2016-07-18 1776 ENSG00000163687 OTTHUMG00000159153 uc003djo.3 AF047354 NM_004944 "CCDS2886|CCDS58836" Q13609 "9205125|9714828|14646506" MGI:1314633 RGD:620669 DNASE1L3 602244 291856 +HGNC:2960 DNASE2 deoxyribonuclease 2, lysosomal protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "DNL|DNL2" deoxyribonuclease II, lysosomal 2001-06-22 2016-07-18 2016-10-05 1777 ENSG00000105612 OTTHUMG00000180535 uc002mvn.2 AF045937 NM_001375 CCDS12284 O00115 1586130 MGI:1329019 RGD:621457 DNASE2 126350 3.1.22.1 +HGNC:28875 DNASE2B deoxyribonuclease 2 beta protein-coding gene gene with protein product Approved 1p31.1-p22.3 01p31.1-p22.3 DLAD deoxyribonuclease II beta 2004-12-02 2016-07-18 2016-10-11 58511 ENSG00000137976 OTTHUMG00000009860 uc001dju.2 AF274571 NM_021233 "CCDS694|CCDS44167" Q8WZ79 "12594037|11376952" MGI:1913283 RGD:70901 DNASE2B 608057 +HGNC:2967 DNCM entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-04-15 +HGNC:23799 DND1 DND microRNA-mediated repression inhibitor 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "MGC34750|RBMS4" dead end homolog 1 (zebrafish) RNA binding motif containing 725 2003-12-12 2013-07-31 2014-11-19 373863 ENSG00000256453 OTTHUMG00000129499 uc003lgt.4 AY321065 NM_194249 CCDS4236 Q8IYX4 12932328 MGI:2447763 RGD:1583648 DND1 609385 +HGNC:31444 DND1P1 DND microRNA-mediated repression inhibitor 1 pseudogene 1 pseudogene pseudogene Approved 17q21.31 17q21.31 dead end homolog 1 pseudogene 1 2004-04-19 2015-06-26 2015-06-26 644157 ENSG00000264070 OTTHUMG00000178253 NG_022468 PGOHUM00000237411 +HGNC:31445 DND1P2 DND microRNA-mediated repression inhibitor 1 pseudogene 2 pseudogene pseudogene Approved 17q21.31 17q21.31 dead end homolog 1 pseudogene 2 2004-04-19 2015-06-26 2015-06-26 644256 NG_022452 PGOHUM00000237092 +HGNC:24456 DNER delta/notch like EGF repeat containing protein-coding gene gene with protein product Approved 2q36.3 02q36.3 "UNQ26|bet" delta/notch-like EGF repeat containing 2006-10-26 2015-11-12 2015-11-12 92737 ENSG00000187957 OTTHUMG00000153637 uc002vpv.4 AY358891 NM_139072 CCDS33390 Q8NFT8 "11950833|11997712" MGI:2152889 RGD:1359385 DNER 607299 +HGNC:26532 DNHD1 dynein heavy chain domain 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "FLJ32752|FLJ46184|FLJ35709|DKFZp686J0796" "DHCD1|C11orf47|DNHD1L|CCDC35" "chromosome 11 open reading frame 47|dynein heavy chain domain 1-like|coiled-coil domain containing 35" 2005-11-01 2005-11-28 2014-11-19 144132 ENSG00000179532 OTTHUMG00000133403 uc001mdw.5 AK128064 NM_144666 "CCDS44532|CCDS7767" Q96M86 12975309 MGI:1924755 RGD:1584052 DNHD1 +HGNC:33879 DNLZ DNL-type zinc finger protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "RP11-413M3.2|ZIM17|bA413M3.2|TIMM15|HEP" "translocase of inner mitochondrial membrane 15 homolog (yeast)|HSP70 escort protein" C9orf151 chromosome 9 open reading frame 151 Zinc fingers 26 2007-12-18 2007-12-18 2007-12-18 2014-11-19 728489 ENSG00000213221 OTTHUMG00000020931 uc004chf.3 AL592301 NM_001080849 CCDS35179 Q5SXM8 "21530495|22162012" MGI:106559 RGD:1308635 DNLZ +HGNC:2972 DNM1 dynamin 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 DNM Pleckstrin homology domain containing 682 1992-07-09 2016-10-05 1759 ENSG00000106976 OTTHUMG00000020733 uc064wcg.1 L07807 NM_004408 "CCDS6895|CCDS43882|CCDS75911|CCDS75912" Q05193 "2144893|9143509" MGI:107384 RGD:71096 DNM1 602377 426934 3.6.5.5 +HGNC:18228 DNM1DN1@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:21119 DNM1DN2@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:21123 DNM1DN6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-24 +HGNC:21130 DNM1DN13 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-13 +HGNC:21137 DNM1DN20 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-13 +HGNC:21138 DNM1DN21 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-13 +HGNC:21139 DNM1DN22 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:21141 DNM1DN23 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:2973 DNM1L dynamin 1 like protein-coding gene gene with protein product Approved 12p11.21 12p11.21 "DRP1|DVLP|HDYNIV|DYMPLE|VPS1" 2000-04-12 2016-07-05 2016-07-05 10059 ENSG00000087470 OTTHUMG00000169451 uc001rlf.4 AF000430 NM_012062 "CCDS8728|CCDS8729|CCDS8730|CCDS61095|CCDS61096|CCDS61098|CCDS61099|CCDS81680" O00429 "9348079|9731200" MGI:1921256 RGD:620416 DNM1L 603850 331806 3.6.5.5 +HGNC:21122 DNM1P5 dynamin 1 pseudogene 5 pseudogene pseudogene Approved 15q14 15q14 DNM1DN5@ DNM1DN5 "DNM1 duplicon 5|DNM1 pseudogene 5" 2003-12-22 2008-10-13 2015-04-07 2015-04-07 728770 AJ576290 NG_009127 15008788 PGOHUM00000261186 +HGNC:21126 DNM1P9 dynamin 1 pseudogene 9 pseudogene pseudogene Approved 15q24.3 15q24.3 DNM1DN9-1 "DNM1DN9@|DNM1DN9" "DNM1 duplicon 9 cluster|DNM1 duplicon 9|DNM1 pseudogene 9" 2003-12-22 2008-10-13 2015-04-07 2015-04-07 400403 AJ576256 NG_009125 15008788 +HGNC:21134 DNM1P17 dynamin 1 pseudogene 17 pseudogene pseudogene Approved 10p11.23 10p11.23 DNM1DN17@ DNM1DN17 "DNM1 duplicon 17|DNM1 pseudogene 17" 2003-12-22 2008-10-15 2015-04-07 2015-04-07 100131084 ENSG00000250833 OTTHUMG00000017888 AJ576284 NG_009124 15008788 PGOHUM00000261091 +HGNC:21135 DNM1P18 dynamin 1 pseudogene 18 pseudogene pseudogene Approved 22q13.2 22q13.2 DNM1DN18 "DNM1 duplicon 18|DNM1 pseudogene 18" 2003-12-22 2008-10-13 2015-04-07 2015-04-07 387553 AJ576285 NG_009128 15008788 +HGNC:21136 DNM1P19 dynamin 1 pseudogene 19 pseudogene pseudogene Approved 12q23.1 12q23.1 DNM1DN19 "DNM1 duplicon 19|DNM1 pseudogene 19" 2003-12-22 2008-10-13 2015-04-07 2015-04-07 387554 AJ576286 NG_009129 15008788 +HGNC:35171 DNM1P24 dynamin 1 pseudogene 24 pseudogene pseudogene Approved Yq11.23 Yq11.23 DNM1DN15-1 DNM1DN15@ DNM1 pseudogene 24 2008-10-24 2015-04-07 2015-04-07 100216505 ENSG00000242854 OTTHUMG00000045078 AJ576278 NG_004755 PGOHUM00000233839 +HGNC:35172 DNM1P25 dynamin 1 pseudogene 25 pseudogene pseudogene Approved Yq11.23 Yq11.23 DNM1DN15-3 DNM1DN15@ DNM1 pseudogene 25 2008-10-24 2015-04-07 2016-10-05 100216506 AJ576280 NG_004755 +HGNC:35173 DNM1P26 dynamin 1 pseudogene 26 pseudogene pseudogene Approved Yq11.23 Yq11.23 DNM1DN16-1 DNM1DN16@ DNM1 pseudogene 26 2008-10-24 2015-04-07 2015-04-07 100216507 AJ576281 NG_004755 +HGNC:35174 DNM1P27 dynamin 1 pseudogene 27 pseudogene pseudogene Approved Yq11.23 Yq11.23 DNM1DN16-3 DNM1DN16@ DNM1 pseudogene 27 2008-10-24 2015-04-07 2015-04-07 100216514 AJ576283 NG_004755 +HGNC:35175 DNM1P28 dynamin 1 pseudogene 28 pseudogene pseudogene Approved 15q13.2 15q13.2 "DNM1DN3-1|DNM1DN3-3" DNM1DN3@ DNM1 pseudogene 28 2008-10-24 2015-04-07 2015-04-07 100132031 ENSG00000261792 OTTHUMG00000175636 "AJ576300|AJ576304" NG_009142 PGOHUM00000261166 +HGNC:35176 DNM1P29 dynamin 1 pseudogene 29 pseudogene pseudogene Approved 15q13.2 15q13.2 DNM1DN3-2 DNM1DN3@ DNM1 pseudogene 29 2008-10-24 2015-04-07 2015-04-07 100132204 AJ576303 NG_009141 PGOHUM00000261184 +HGNC:35177 DNM1P30 dynamin 1 pseudogene 30 pseudogene pseudogene Approved 15q13.2 15q13.2 "DNM1DN3-4|DNM1DN4-3" "DNM1DN3@|DNM1DN4@" DNM1 pseudogene 30 2008-10-24 2015-04-07 2015-04-07 728388 ENSG00000260897 OTTHUMG00000175639 "AJ576305|AJ576308" NG_009071 PGOHUM00000261167 +HGNC:35178 DNM1P31 dynamin 1 pseudogene 31 pseudogene pseudogene Approved 15q13.3 15q13.3 DNM1DN4-2 DNM1DN4@ DNM1 pseudogene 31 2008-10-24 2015-04-07 2015-04-07 644153 ENSG00000261491 OTTHUMG00000175394 AJ576307 NG_009133 PGOHUM00000258949 +HGNC:35179 DNM1P32 dynamin 1 pseudogene 32 pseudogene pseudogene Approved 15q13.3 15q13.3 DNM1DN4-5 DNM1DN4@ DNM1 pseudogene 32 2008-10-24 2015-04-07 2015-04-07 100132100 ENSG00000261708 OTTHUMG00000175397 AJ576310 NG_009139 PGOHUM00000261185 +HGNC:35180 DNM1P33 dynamin 1 pseudogene 33 pseudogene pseudogene Approved 15q24.1 15q24.1 DNM1DN7-2 DNM1DN7@ DNM1 pseudogene 33 2008-10-24 2015-04-07 2015-04-07 554175 ENSG00000260096 OTTHUMG00000173034 AJ576301 XR_016015 PGOHUM00000261192 +HGNC:35181 DNM1P34 dynamin 1 pseudogene 34 pseudogene pseudogene Approved 15q24.2 15q24.2 "DNM1DN8-1|DNM1DN8-5" DNM1DN8@ DNM1 pseudogene 34 2008-10-24 2015-04-07 2015-04-07 729809 ENSG00000260357 OTTHUMG00000172673 AJ576251 NG_009143 Q6PK57 PGOHUM00000261173 +HGNC:35182 DNM1P35 dynamin 1 pseudogene 35 pseudogene pseudogene Approved 15q24.2 15q24.2 DNM1DN8-2 DNM1DN8@ DNM1 pseudogene 35 2008-10-24 2015-04-07 2015-08-19 100128285 ENSG00000246877 OTTHUMG00000177189 uc002bay.1 AJ576252 NR_024595 PGOHUM00000293022 +HGNC:35186 DNM1P36 dynamin 1 pseudogene 36 pseudogene pseudogene Approved 15q25.2 15q25.2 DNM1DN8-3 DNM1DN8@ DNM1 pseudogene 36 2008-10-24 2015-04-07 2015-04-07 100216515 AJ576253 NG_009135 +HGNC:35187 DNM1P37 dynamin 1 pseudogene 37 pseudogene pseudogene Approved 15q25.1 15q25.1 DNM1DN10-1 DNM1DN10@ DNM1 pseudogene 37 2008-10-24 2015-04-07 2015-04-07 100216516 AJ576268 NG_009136 +HGNC:35188 DNM1P38 dynamin 1 pseudogene 38 pseudogene pseudogene Approved 15q25.2 15q25.2 "DNM1DN10-2|DNM1DN11-8" "DNM1DN10@|DNM1P42|DNM1DN11@" "DNM1 pseudogene 42|DNM1 pseudogene 38" 2008-10-24 2015-04-07 2015-04-07 100216517 ENSG00000259637 OTTHUMG00000172546 AJ576269 NG_009137 PGOHUM00000258883 +HGNC:35189 DNM1P39 dynamin 1 pseudogene 39 pseudogene pseudogene Approved 15q25.2 15q25.2 DNM1DN11-3 DNM1DN11@ DNM1 pseudogene 39 2008-10-24 2015-04-07 2015-04-07 100216518 AJ576259 NG_009138 +HGNC:35190 DNM1P40 dynamin 1 pseudogene 40 pseudogene pseudogene Approved 15q25.2 15q25.2 DNM1DN11-5 DNM1DN11@ DNM1 pseudogene 40 2008-10-24 2015-04-07 2015-04-07 400433 AJ576261 NG_009132 +HGNC:35191 DNM1P41 dynamin 1 pseudogene 41 pseudogene pseudogene Approved 15q25.2 15q25.2 DNM1DN11-6 DNM1DN11@ DNM1 pseudogene 41 2008-10-24 2015-04-07 2015-04-07 440299 ENSG00000280038 OTTHUMG00000172494 uc059mrb.1 AJ576262 NR_033787 +HGNC:35193 DNM1P43 dynamin 1 pseudogene 43 pseudogene pseudogene Approved 15q25.2 15q25.2 DNM1DN11-10 DNM1DN11@ DNM1 pseudogene 43 2008-10-24 2015-04-07 2015-04-07 100216466 AJ576266 NG_009070 +HGNC:35194 DNM1P44 dynamin 1 pseudogene 44 pseudogene pseudogene Approved 15q25.2 15q25.2 DNM1DN11-13 DNM1DN11@ DNM1 pseudogene 44 2008-10-24 2015-04-07 2015-04-07 440303 AJ576312 NG_009148 +HGNC:35195 DNM1P45 dynamin 1 pseudogene 45 pseudogene pseudogene Approved 15q25.3 15q25.3 DNM1DN12-2 DNM1DN12@ DNM1 pseudogene 45 2008-10-24 2015-04-07 2015-04-07 100216542 AJ576271 NG_009145 +HGNC:35199 DNM1P46 dynamin 1 pseudogene 46 pseudogene pseudogene Approved 15q26.3 15q26.3 "DNM1DN14.2|FLJ45937|DKFZp434I1020" "DNM1DN14@|C15orf51" "chromosome 15 open reading frame 51|DNM1 pseudogene 46" 2008-10-24 2015-04-07 2015-04-07 196968 ENSG00000182397 OTTHUMG00000149852 AJ576275 NR_003260 Q6ZS02 PGOHUM00000261181 +HGNC:35200 DNM1P47 dynamin 1 pseudogene 47 pseudogene pseudogene Approved 15q26.3 15q26.3 DNM1DN14-3 DNM1DN14@ DNM1 pseudogene 47 2008-10-24 2015-04-07 2015-04-07 100216544 ENSG00000259660 OTTHUMG00000172265 AJ576276 NG_009149 PGOHUM00000261196 +HGNC:38801 DNM1P48 dynamin 1 pseudogene 48 pseudogene pseudogene Approved Yq11.23 Yq11.23 DNM1 pseudogene 48 2010-08-05 2015-04-07 2015-04-07 100418739 ENSG00000239304 OTTHUMG00000045285 NG_004755 PGOHUM00000234083 +HGNC:47040 DNM1P49 dynamin 1 pseudogene 49 pseudogene pseudogene Approved 15q24.2 15q24.2 DNM1DN8@ DNM1 pseudogene 49 2013-05-07 2015-04-07 2015-08-17 730058 ENSG00000261820 OTTHUMG00000172796 NG_033232 PGOHUM00000293023 +HGNC:48499 DNM1P50 dynamin 1 pseudogene 50 pseudogene pseudogene Approved 15q13.2 15q13.2 DNM1 pseudogene 50 2013-05-16 2015-04-07 2015-04-07 100996420 ENSG00000259890 OTTHUMG00000175652 PGOHUM00000261168 +HGNC:48500 DNM1P51 dynamin 1 pseudogene 51 pseudogene pseudogene Approved 15q25.2 15q25.2 DNM1 pseudogene 51 2013-05-16 2015-04-07 2016-02-03 ENSG00000235370 OTTHUMG00000172438 PGOHUM00000262075 +HGNC:2974 DNM2 dynamin 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "DYNII|DYN2|CMTDIB|CMTDI1|DI-CMTB|CMT2M" "dynamin II|cytoskeletal protein" Pleckstrin homology domain containing 682 1996-10-11 2016-10-12 1785 ENSG00000079805 OTTHUMG00000180694 uc002mpu.3 NM_004945 "CCDS32907|CCDS32908|CCDS45968|CCDS45969|CCDS59351" P50570 "7590285|9143510" MGI:109547 RGD:2513 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_238|http://www.lrg-sequence.org/LRG/LRG_238" DNM2 602378 121147 +HGNC:29125 DNM3 dynamin 3 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 KIAA0820 Dyna III Pleckstrin homology domain containing 682 2004-03-12 2016-10-05 26052 ENSG00000197959 OTTHUMG00000034913 uc001gif.5 AL136712 NM_015569 "CCDS44276|CCDS60356|CCDS53431" Q9UQ16 10048485 MGI:1341299 RGD:727949 DNM3 611445 +HGNC:41494 DNM3-IT1 DNM3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q24.3 01q24.3 DNM3 intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100874284 ENSG00000233540 OTTHUMG00000046154 uc057nib.1 NR_046845 +HGNC:41228 DNM3OS DNM3 opposite strand/antisense RNA non-coding RNA RNA, long non-coding Approved 1q24.3 01q24.3 "MIR199A2HG|DNM3-AS1" MIR199A2 host gene (non-protein coding) DNM3 opposite strand/antisense RNA (non-protein coding) 2011-05-20 2011-11-14 2012-08-15 2014-11-19 100628315 ENSG00000230630 OTTHUMG00000040855 uc031prh.2 NR_038397 "19029138|20400975" +HGNC:30373 DNMBP dynamin binding protein protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "KIAA1010|Tuba|ARHGEF36" scaffold protein TUBA "Rho guanine nucleotide exchange factors|Classical BAR domain containing" "722|1292" 2004-04-05 2016-10-05 23268 ENSG00000107554 OTTHUMG00000018897 uc001kqj.2 AL833283 NM_015221 "CCDS7485|CCDS81494|CCDS81495" Q6XZF7 "10231032|14506234" MGI:1917352 RGD:1583840 DNMBP 611282 +HGNC:20431 DNMBP-AS1 DNMBP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q24.2 10q24.2 "FLJ40792|bA287G8.2" NCRNA00093 "non-protein coding RNA 93|DNMBP antisense RNA 1 (non-protein coding)" 2008-09-03 2011-03-30 2012-08-15 2012-10-12 100188954 ENSG00000227695 OTTHUMG00000018898 uc001kqk.2 AK098111 NR_024130 +HGNC:2976 DNMT1 DNA methyltransferase 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "MCMT|CXXC9" DNMT DNA (cytosine-5-)-methyltransferase 1 Zinc fingers CXXC-type 136 1991-06-04 2016-06-21 2016-10-12 1786 ENSG00000130816 OTTHUMG00000180397 uc002mng.4 X63692 NM_001379 "CCDS12228|CCDS45958" P26358 1594447 MGI:94912 RGD:620979 LRG_362|http://www.lrg-sequence.org/LRG/LRG_362 DNMT1 126375 270026 objectId:2605 2.1.1.37 +HGNC:2978 DNMT3A DNA methyltransferase 3 alpha protein-coding gene gene with protein product Approved 2p23.3 02p23.3 DNA (cytosine-5-)-methyltransferase 3 alpha PWWP domain containing 1147 1998-07-15 2016-06-21 2016-10-12 1788 ENSG00000119772 OTTHUMG00000094777 uc002rgd.5 NM_022552 "CCDS1718|CCDS33157|CCDS46232" Q9Y6K1 "9662389|10433969" MGI:1261827 RGD:1303336 LRG_459|http://www.lrg-sequence.org/LRG/LRG_459 DNMT3A 602769 406016 objectId:2750 +HGNC:23164 DNMT3AP1 DNA methyltransferase 3A pseudogene 1 pseudogene pseudogene Approved 2p14 02p14 2004-08-20 2004-08-20 130802 BN000391 XM_065893 15203217 +HGNC:2979 DNMT3B DNA methyltransferase 3 beta protein-coding gene gene with protein product Approved 20q11.21 20q11.21 DNA (cytosine-5-)-methyltransferase 3 beta PWWP domain containing 1147 1998-07-15 2016-06-21 2016-10-12 1789 ENSG00000088305 OTTHUMG00000032226 uc002wyc.3 NM_006892 "CCDS13204|CCDS13205|CCDS13206|CCDS13207|CCDS56183|CCDS56184" Q9UBC3 "9662389|10433969" MGI:1261819 RGD:1303274 "DNMT3Bbase: Mutation registry for ICF syndrome|http://structure.bmc.lu.se/idbase/DNMT3Bbase/|LRG_56|http://www.lrg-sequence.org/LRG/LRG_56" DNMT3B 602900 121150 +HGNC:2980 DNMT3L DNA methyltransferase 3 like protein-coding gene gene with protein product Approved 21q22.3 21q22.3 MGC1090 cytosine-5-methyltransferase 3-like protein DNA (cytosine-5-)-methyltransferase 3-like 2000-05-23 2016-06-21 2016-06-21 29947 ENSG00000142182 OTTHUMG00000086914 uc002zeh.2 AF194032 NM_013369 "CCDS13705|CCDS46650" Q9UJW3 10857753 MGI:1859287 RGD:1303239 DNMT3L 606588 +HGNC:2981 DNPEP aspartyl aminopeptidase protein-coding gene gene with protein product Approved 2q35 02q35 "DAP|ASPEP" Aminopeptidases 104 1998-09-22 2016-10-05 23549 ENSG00000123992 OTTHUMG00000058919 uc002vle.3 NM_012100 "CCDS42823|CCDS82574" Q9ULA0 9632644 MGI:1278328 RGD:1583848 DNPEP 611367 M18.002 objectId:1559 +HGNC:21218 DNPH1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "rcl|dJ330M21.3" C6orf108 chromosome 6 open reading frame 108 2003-11-25 2012-11-28 2012-11-28 2014-11-18 10591 ENSG00000112667 OTTHUMG00000014724 uc003ouo.4 AF040105 NM_006443 "CCDS4891|CCDS43465" O43598 "9271375|17234634" MGI:3039376 RGD:620382 +HGNC:2983 DNTT DNA nucleotidylexotransferase protein-coding gene gene with protein product Approved 10q24.1 10q24.1 TDT Terminal deoxynucleotidyltransferase deoxynucleotidyltransferase, terminal DNA polymerases 535 2001-06-22 2013-05-21 2016-10-05 1791 ENSG00000107447 OTTHUMG00000018832 uc001kmf.4 AB046378 NM_004088 "CCDS7447|CCDS44465" P04053 MGI:98659 RGD:1305054 DNTT 187410 2.7.7.31 +HGNC:16160 DNTTIP1 deoxynucleotidyltransferase terminal interacting protein 1 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ447F3.4|Tdif1" "novel protein similar to synaptotagmin 1 (SYT1, P65) (isoform 1)|TdT binding protein" C20orf167 "chromosome 20 open reading frame 167|deoxynucleotidyltransferase, terminal, interacting protein 1" 2001-07-17 2003-09-12 2016-07-20 2016-07-20 116092 ENSG00000101457 OTTHUMG00000032610 uc002xpk.3 AB035676 NM_052951 CCDS13369 Q9H147 11473582 MGI:1923483 RGD:621627 DNTTIP1 611388 +HGNC:24013 DNTTIP2 deoxynucleotidyltransferase terminal interacting protein 2 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "HSU15552|ERBP|TdIF2" acidic 82 kDa protein mRNA deoxynucleotidyltransferase, terminal, interacting protein 2 2005-11-28 2016-04-05 2016-04-05 30836 ENSG00000067334 OTTHUMG00000010268 uc001dqf.4 AY394925 NM_014597 CCDS44174 Q5QJE6 15047147 MGI:1923173 RGD:6497192 DNTTIP2 611199 +HGNC:2985 DOC2A double C2 domain alpha protein-coding gene gene with protein product Approved 16p11.2 16p11.2 double C2-like domains, alpha Synaptotagmin like tandem C2 proteins 822 1998-10-30 2016-03-17 2016-03-17 8448 ENSG00000149927 OTTHUMG00000132109 uc002dvp.5 D31897 NM_003586 CCDS10666 Q14183 "7826360|9736751" MGI:109446 RGD:620518 DOC2A 604567 +HGNC:2986 DOC2B double C2 domain beta protein-coding gene gene with protein product Approved 17p13.3 17p13.3 DOC2BL "double C2-like domains, beta-like|double C2-like domains, beta" Synaptotagmin like tandem C2 proteins 822 1998-10-30 2016-03-17 2016-03-17 8447 ENSG00000272636 OTTHUMG00000154415 uc010vpx.3 D70830 NM_003585 CCDS73934 Q14184 7826360 MGI:1100497 RGD:620519 DOC2B 604568 +HGNC:37962 DOC2GP double C2 domain gamma pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 double C2-like domains, gamma, pseudogene Synaptotagmin like tandem C2 proteins 822 2010-03-12 2016-03-17 2016-03-17 390213 ENSG00000231793 OTTHUMG00000154229 XM_002343097.1 20210993 MGI:1926250 +HGNC:2987 DOCK1 dedicator of cytokinesis 1 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 "DOCK180|ced5" DOwnstream of CrK dedicator of cyto-kinesis 1 1998-05-13 2016-10-05 1793 ENSG00000150760 OTTHUMG00000019249 uc001ljt.4 D50857 NM_001380 "CCDS73222|CCDS76359" Q14185 "8657152|8661160" MGI:2429765 RGD:1566072 DOCK1 601403 +HGNC:2988 DOCK2 dedicator of cytokinesis 2 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 KIAA0209 dedicator of cyto-kinesis 2 1998-05-13 2015-08-27 1794 ENSG00000134516 OTTHUMG00000130437 uc003maf.3 BC016996 NM_004946 CCDS4371 Q92608 MGI:2149010 RGD:1564189 DOCK2 603122 457458 +HGNC:2989 DOCK3 dedicator of cytokinesis 3 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "KIAA0299|MOCA|PBP" dedicator of cyto-kinesis 3 1998-05-13 2016-10-05 1795 ENSG00000088538 OTTHUMG00000156892 uc011bds.2 AB002297 NM_004947 CCDS46835 Q8IZD9 9205841 MGI:2429763 RGD:1306677 DOCK3 603123 +HGNC:19192 DOCK4 dedicator of cytokinesis 4 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 "FLJ34238|KIAA0716" 2003-11-19 2015-08-25 9732 ENSG00000128512 OTTHUMG00000155077 uc003vfx.4 NM_014705 CCDS47688 Q8N1I0 "12432077|12628187" MGI:1918006 RGD:1561724 DOCK4 607679 +HGNC:40876 DOCK4-AS1 DOCK4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q31.1 07q31.1 2013-07-23 2014-11-19 100506413 ENSG00000225572 OTTHUMG00000155078 NR_103806 +HGNC:23476 DOCK5 dedicator of cytokinesis 5 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 FLJ21034 2003-11-19 2015-09-11 80005 ENSG00000147459 OTTHUMG00000131991 uc003xeg.4 NM_024940 "CCDS6047|CCDS83265" Q9H7D0 12432077 MGI:2652871 RGD:1306872 DOCK5 616904 +HGNC:19189 DOCK6 dedicator of cytokinesis 6 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "KIAA1395|ZIR1" 2003-11-19 2015-08-27 57572 ENSG00000130158 OTTHUMG00000180826 uc002mqs.6 NM_020812 CCDS45975 Q96HP0 12432077 MGI:1914789 RGD:1306517 DOCK6 614194 279606 +HGNC:19190 DOCK7 dedicator of cytokinesis 7 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "KIAA1771|ZIR2" 2003-11-19 2016-10-05 85440 ENSG00000116641 OTTHUMG00000013131 uc001dap.6 NM_033407 "CCDS30734|CCDS60156|CCDS60157|CCDS81335|CCDS81336|CCDS81338" Q96N67 12432077 MGI:1914549 RGD:1309790 DOCK7 615730 415155 +HGNC:19191 DOCK8 dedicator of cytokinesis 8 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 "FLJ00026|FLJ00152|ZIR8|FLJ00346" 2003-12-02 2016-10-12 81704 ENSG00000107099 OTTHUMG00000078789 uc003zgf.2 AK090429 XM_036307 "CCDS55283|CCDS55284|CCDS6440" Q8NF50 11214971 MGI:1921396 RGD:1561588 LRG_196|http://www.lrg-sequence.org/LRG/LRG_196 DOCK8 611432 220922 +HGNC:14132 DOCK9 dedicator of cytokinesis 9 protein-coding gene gene with protein product Approved 13q32.3 13q32.3 "KIAA1058|ZIZ1" zizimin1 Pleckstrin homology domain containing 682 2003-11-19 2015-08-27 23348 ENSG00000088387 OTTHUMG00000017260 uc058xyj.1 AF527605 NM_015296 "CCDS45062|CCDS45063|CCDS76645" Q9BZ29 "12172552|12432077" MGI:106321 RGD:629617 DOCK9 607325 +HGNC:40672 DOCK9-AS1 DOCK9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 DOCK9 antisense RNA 1 (non-protein coding) 2011-05-05 2012-08-15 2014-11-19 100874096 ENSG00000229918 OTTHUMG00000017256 uc032amx.1 AI027206 NR_046663 +HGNC:43696 DOCK9-AS2 DOCK9 antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 "DOCK9 antisense RNA 2 (non-protein coding)|DOCK9 antisense RNA 2" 2012-01-31 2012-10-15 2012-10-15 100861541 ENSG00000260992 OTTHUMG00000176064 uc058xyw.1 AF339771 NR_047482 +HGNC:23479 DOCK10 dedicator of cytokinesis 10 protein-coding gene gene with protein product Approved 2q36.2 02q36.2 "ZIZ3|KIAA0694" zizimin3 Pleckstrin homology domain containing 682 2003-11-19 2016-10-05 55619 ENSG00000135905 OTTHUMG00000153428 uc010fwz.2 AB014594 XM_017004441 "CCDS46528|CCDS74661" Q96BY6 12432077 MGI:2146320 RGD:1561963 DOCK10 611518 +HGNC:23483 DOCK11 dedicator of cytokinesis 11 protein-coding gene gene with protein product Approved Xq24 Xq24 "FLJ32122|FLJ43653|ZIZ2|ACG" zizimin2 Pleckstrin homology domain containing 682 2003-11-19 2015-09-11 139818 ENSG00000147251 OTTHUMG00000022256 uc065avl.1 AK125641 NM_144658 CCDS35373 Q5JSL3 "12432077|16968698" MGI:1923224 RGD:1564707 DOCK11 300681 +HGNC:31719 DOCK11P1 dedicator of cytokinesis 11 pseudogene 1 pseudogene pseudogene Approved 14q21.2 14q21.2 2004-06-17 2014-11-19 100132537 ENSG00000259000 OTTHUMG00000170718 NG_028868 PGOHUM00000247788 +HGNC:28662 DOHH deoxyhypusine hydroxylase/monooxygenase protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC4293 HLRC1 HEAT-like (PBS lyase) repeat containing 1 2005-07-04 2006-05-22 2006-05-22 2014-11-19 83475 ENSG00000129932 OTTHUMG00000180762 uc010xhl.3 BC002817 NM_031304 CCDS12108 Q9BU89 "16371467|16533814" MGI:1915964 RGD:1304783 DOHH 611262 +HGNC:2990 DOK1 docking protein 1 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 p62dok downstream of tyrosine kinase 1 "docking protein 1, 62kD (downstream of tyrosine kinase 1)|docking protein 1, 62kDa (downstream of tyrosine kinase 1)" 1997-07-25 2015-11-10 2016-10-05 1796 ENSG00000115325 OTTHUMG00000129956 uc002sms.4 U70987 NM_001381 "CCDS1954|CCDS56125|CCDS82474" Q99704 "9008160|9790776|15546884" MGI:893587 RGD:1309499 DOK1 602919 +HGNC:2991 DOK2 docking protein 2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "p56dok-2|Dok-2" downstream of tyrosine kinase 2 "docking protein 2, 56kD|docking protein 2, 56kDa" 1999-02-05 2015-11-09 2015-11-10 9046 ENSG00000147443 OTTHUMG00000131075 uc003wzy.2 AF034970 NM_003974 CCDS6016 O60496 "9478921|14645010" MGI:1332623 RGD:1310966 DOK2 604997 +HGNC:24583 DOK3 docking protein 3 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 FLJ22570 2004-07-06 2016-10-05 79930 ENSG00000146094 OTTHUMG00000130850 uc003mhk.3 AK026223 NM_024872 "CCDS4426|CCDS47349|CCDS47350|CCDS78098" Q7L591 "10733577|12595900" MGI:1351490 RGD:1311840 DOK3 611435 +HGNC:19868 DOK4 docking protein 4 protein-coding gene gene with protein product Approved 16q21 16q21 FLJ10488 Pleckstrin homology domain containing 682 2002-11-28 2016-10-05 55715 ENSG00000125170 OTTHUMG00000133460 uc002elv.5 BC003541 XM_005256042 "CCDS10783|CCDS81986" Q8TEW6 10493829 MGI:2148865 RGD:1310084 DOK4 608333 +HGNC:16173 DOK5 docking protein 5 protein-coding gene gene with protein product Approved 20q13.2 20q13.2 dJ805C22.1 C20orf180 chromosome 20 open reading frame 180 Pleckstrin homology domain containing 682 2001-07-17 2002-11-29 2002-11-28 2015-08-27 55816 ENSG00000101134 OTTHUMG00000032778 uc002xwy.4 AF132732 NM_177959 "CCDS13446|CCDS13447" Q9P104 11470823 MGI:1924079 RGD:1562846 DOK5 608334 +HGNC:28301 DOK6 docking protein 6 protein-coding gene gene with protein product Approved 18q22.2 18q22.2 "MGC20785|HsT3226" DOK5L docking protein 5-like Pleckstrin homology domain containing 682 2004-05-05 2005-01-18 2005-01-18 2015-08-27 220164 ENSG00000206052 OTTHUMG00000178688 uc002lkl.4 AK057795 NM_152721 CCDS32841 Q6PKX4 15286081 MGI:3639495 RGD:1564376 DOK6 611402 +HGNC:26594 DOK7 docking protein 7 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "FLJ33718|FLJ39137|Dok-7" C4orf25 chromosome 4 open reading frame 25 2006-05-22 2006-08-24 2006-08-24 2016-10-12 285489 ENSG00000175920 OTTHUMG00000122087 uc003ghd.4 AK091037 NM_173660 "CCDS3370|CCDS54717" Q18PE1 16794080 MGI:3584043 RGD:1566416 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=DOK7|LRG_869|http://www.lrg-sequence.org/LRG/LRG_869" DOK7 610285 121152 +HGNC:23406 DOLK dolichol kinase protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "KIAA1094|DK1" dolichol kinase 1 TMEM15 transmembrane protein 15 2003-11-17 2007-02-09 2007-02-09 2016-10-12 22845 ENSG00000175283 OTTHUMG00000020765 uc004bwr.4 AB029017 NM_014908 CCDS6915 Q9UPQ8 "12975309|16923818" MGI:2677836 RGD:1310821 LRG_744|http://www.lrg-sequence.org/LRG/LRG_744 DOLK 610746 123375 +HGNC:29565 DOLPP1 dolichyldiphosphatase 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 LSFR2 linked to Surfeit genes in Fugu rubripes 2 dolichyl pyrophosphate phosphatase 1 Lipid phosphatases 1066 2004-02-13 2013-05-21 2016-10-05 57171 ENSG00000167130 OTTHUMG00000020771 uc004bxc.4 BC009493 NM_020438 "CCDS6918|CCDS48039" Q86YN1 "10369878|12198133" MGI:1914093 RGD:1307447 DOLPP1 614516 3.6.1.43 +HGNC:2993 DONSON downstream neighbor of SON protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "B17|C2TA|DKFZP434M035" C21orf60 2000-02-18 2016-10-05 29980 ENSG00000159147 OTTHUMG00000065904 uc002ysk.5 AF000002 NM_017613 CCDS13632 Q9NYP3 "10773462|10950926" MGI:1890621 RGD:1306823 DONSON 611428 +HGNC:21194 DOPEY1 dopey family member 1 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 dJ202D23.2 KIAA1117 KIAA1117 2003-11-17 2006-02-02 2006-02-02 2016-10-05 23033 ENSG00000083097 OTTHUMG00000016365 uc003pjs.2 AK027030 NM_015018 "CCDS4996|CCDS64467" Q5JWR5 "16301316|16303751|10931277" MGI:1289294 RGD:1305534 DOPEY1 616823 +HGNC:1291 DOPEY2 dopey family member 2 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 KIAA0933 C21orf5 chromosome 21 open reading frame 5 1999-04-28 2006-02-02 2006-02-02 2016-10-05 9980 ENSG00000142197 OTTHUMG00000086619 uc002yvg.4 AJ237839 NM_005128 CCDS13643 Q9Y3R5 "16301316|16303751|10931277" MGI:1917278 RGD:1306097 DOPEY2 604803 +HGNC:24948 DOT1L DOT1 like histone lysine methyltransferase protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "KIAA1814|DOT1|KMT4" histone methyltransferase DOT1L DOT1-like, histone H3 methyltransferase (S. cerevisiae) Lysine methyltransferases 487 2004-03-08 2016-05-04 2016-05-04 84444 ENSG00000104885 OTTHUMG00000150431 uc002lvb.4 AF509504 NM_032482 CCDS42460 Q8TEK3 "11347906|12123582" MGI:2143886 RGD:1306644 DOT1L 607375 objectId:2650 2.1.1.43 +HGNC:2995 DPAGT1 dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "GPT|D11S366|DGPT|ALG7|CDG-Ij" "GlcNAc-1-P transferase 1|UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase 1" "DPAGT2|DPAGT" dolichyl-phosphate (UDP-N-acetylglucosamine) N-acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase) 1993-12-13 2016-01-19 2016-01-19 1798 ENSG00000172269 OTTHUMG00000153533 uc031yhj.1 Z82022 NM_001382 CCDS8411 Q9H3H5 8244387 MGI:1196396 RGD:735124 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ DPAGT1 191350 121158 2.7.8.15 +HGNC:24542 DPCD deleted in primary ciliary dyskinesia homolog (mouse) protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "DKFZP566F084|RP11-529I10.4" 2009-08-25 2012-05-03 25911 ENSG00000166171 OTTHUMG00000018934 uc001ktn.4 NM_001329745 CCDS7514 Q9BVM2 14630615 MGI:1924407 RGD:1307648 DPCD 616467 +HGNC:21666 DPCR1 diffuse panbronchiolitis critical region 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "PBLT|bCX105N19.6" 2004-02-03 2016-10-05 135656 ENSG00000168631 OTTHUMG00000031104 uc003nsg.3 AB064272 NM_080870 CCDS4692 Q3MIW9 "12185533|10677310" MGI:2685476 RGD:1303125 DPCR1 613928 183886 +HGNC:3002 DPEP1 dipeptidase 1 (renal) protein-coding gene gene with protein product Approved 16q24.3 16q24.3 1991-08-08 2016-10-05 1800 ENSG00000015413 OTTHUMG00000138052 uc010cin.4 NM_001128141 CCDS10982 P16444 MGI:94917 RGD:620324 DPEP1 179780 M19.001 objectId:1393 3.4.13.19 +HGNC:23028 DPEP2 dipeptidase 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 2003-09-12 2015-09-11 64174 ENSG00000167261 OTTHUMG00000137542 uc002eve.5 AJ295149 NM_022355 CCDS10857 Q9H4A9 MGI:2442042 RGD:1305746 DPEP2 609925 M19.004 objectId:1394 3.4.13.19 +HGNC:23029 DPEP3 dipeptidase 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 2003-09-12 2015-09-11 64180 ENSG00000141096 OTTHUMG00000137544 uc002evc.5 AJ291679 NM_022357 CCDS10856 Q9H4B8 MGI:1919104 RGD:1305484 DPEP3 609926 M19.011 3.4.13.19 +HGNC:20225 DPF1 double PHD fingers 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "neuro-d4|NEUD4|BAF45b" D4, zinc and double PHD fingers family 1 PHD finger proteins 88 2003-01-28 2016-02-10 2016-10-05 8193 ENSG00000011332 OTTHUMG00000157164 uc060xyx.1 U43843 XM_006723408 "CCDS33008|CCDS46064|CCDS46065" Q92782 8812431 MGI:1352748 RGD:61868 DPF1 601670 +HGNC:9964 DPF2 double PHD fingers 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "ubi-d4|BAF45d" REQ "requiem, apoptosis response zinc finger gene|D4, zinc and double PHD fingers family 2" PHD finger proteins 88 1997-05-15 2003-10-08 2016-02-10 2016-02-10 5977 ENSG00000133884 OTTHUMG00000165985 uc001odm.4 U94585 NM_006268 "CCDS8100|CCDS81583" Q92785 11845289 MGI:109529 RGD:1311699 DPF2 601671 +HGNC:17427 DPF3 double PHD fingers 3 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 "cer-d4|Cerd4|FLJ14079|BAF45c" D4, zinc and double PHD fingers, family 3 PHD finger proteins 88 2003-01-28 2016-02-10 2016-02-10 8110 ENSG00000205683 OTTHUMG00000171364 uc001xnc.4 U43919 XM_017021670 "CCDS45133|CCDS61495|CCDS61496|CCDS61497" Q92784 "11845289|8812431" MGI:1917377 RGD:1309052 DPF3 601672 +HGNC:3003 DPH1 diphthamide biosynthesis 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OVCA1 ovarian tumor suppressor candidate 1 "DPH2L|DPH2L1" "diptheria toxin resistance protein required for diphthamide biosynthesis-like 1 (S. cerevisiae)|DPH-like 1 (S. cerevisiae)|DPH1 homolog (S. cerevisiae)" Minor histocompatibility antigens 870 1995-08-25 2005-06-03 2013-05-02 2015-08-25 1801 ENSG00000108963 OTTHUMG00000177724 uc002fts.4 S81752 NM_001383 CCDS42228 Q9BZG8 "8603384|15485916|22869748" MGI:2151233 RGD:1562694 DPH1 603527 460847 +HGNC:3004 DPH2 DPH2 homolog protein-coding gene gene with protein product Approved 1p34.1 01p34.1 DPH2L2 "diptheria toxin resistance protein required for diphthamide biosynthesis-like 2 (S. cerevisiae)|DPH2-like 2 (S. cerevisiae)|DPH2 homolog (S. cerevisiae)" 1998-03-24 2005-06-03 2015-07-02 2016-10-05 1802 ENSG00000132768 OTTHUMG00000008295 uc001ckz.4 AF053003 NM_001384 "CCDS504|CCDS41314" Q9BQC3 "9782084|15485916" MGI:1914978 RGD:1304634 DPH2 603456 +HGNC:27717 DPH3 diphthamide biosynthesis 3 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "DESR1|DELGIP1|MGC20197|KTI11|DELGIP|DPH3A" DPH3A, KTI11 homolog A (S. cerevisiae) ZCSL2 "zinc finger, CSL-type containing 2|DPH3 homolog (KTI11, S. cerevisiae)|DPH3, KTI11 homolog (S. cerevisiae)" 2004-07-14 2006-10-25 2013-06-19 2015-09-11 285381 ENSG00000154813 OTTHUMG00000129866 uc003cau.4 BC010181 NM_206831 "CCDS2629|CCDS43058" Q96FX2 "14527407|14980502|15485916|16648478" MGI:1922658 RGD:1590566 DPH3 608959 +HGNC:16136 DPH3P1 diphthamide biosynthesis 3 pseudogene 1 pseudogene pseudogene Approved 20q13.33 20q13.33 dJ885L7.5 "C20orf143|ZCSL1|DPH3B" "chromosome 20 open reading frame 143|zinc finger, CSL-type containing 1|DPH3B, KTI11 homolog B (S. cerevisiae)|DPH3, KTI11 homolog (S. cerevisiae) pseudogene 1" 2001-07-17 2010-07-28 2013-06-19 2014-11-19 100132911 ENSG00000233838 OTTHUMG00000032941 NM_080750 Q9H4G8 +HGNC:38719 DPH3P2 diphthamide biosynthesis 3 pseudogene 2 pseudogene pseudogene Approved Xq28 and Yq12 Xq28 and Yq12 DPH3, KTI11 homolog (S. cerevisiae) pseudogene 2 Pseudoautosomal region 2 716 2010-07-28 2013-06-19 2016-10-05 106478926 ENSG00000237040 OTTHUMG00000022680 NG_044993 PGOHUM00000305409 +HGNC:24270 DPH5 diphthamide biosynthesis 5 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 CGI-30 DPH5 homolog (S. cerevisiae) 2005-07-29 2013-05-02 2014-11-18 51611 ENSG00000117543 OTTHUMG00000010829 uc001dts.4 AF132964 NM_015958 "CCDS41358|CCDS41359" Q9H2P9 "15485916|23486472" MGI:1916990 RGD:1307867 DPH5 611075 +HGNC:30543 DPH6 diphthamine biosynthesis 6 protein-coding gene gene with protein product Approved 15q14 15q14 MGC14798 diphthine--ammonia ligase ATPBD4 "ATP binding domain 4|DPH6 homolog (S. cerevisiae)" 2005-10-24 2013-05-02 2013-06-19 2014-11-19 89978 ENSG00000134146 OTTHUMG00000129759 NM_080650 "CCDS10043|CCDS45213" Q7L8W6 "23169644|23468660" MGI:1913882 RGD:1310006 6.3.1.14 +HGNC:44147 DPH6-AS1 DPH6 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 15q14 15q14 ATPBD4-AS1 "ATPBD4 antisense RNA 1 (non-protein coding)|ATPBD4 antisense RNA 1|ATPBD4 antisense RNA 1 (head to head)" 2012-06-30 2013-05-02 2013-05-02 2013-05-02 100507466 ENSG00000248079 OTTHUMG00000172347 BC025664 NR_038251 +HGNC:25199 DPH7 diphthamide biosynthesis 7 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "FLJ90634|RRT2" "C9orf112|WDR85" "chromosome 9 open reading frame 112|WD repeat domain 85" WD repeat domain containing 362 2004-03-25 2013-06-20 2013-06-20 2015-08-25 92715 ENSG00000148399 OTTHUMG00000020991 AK075115 NM_138778 CCDS7047 Q9BTV6 23486472 MGI:1914478 RGD:1304868 613210 +HGNC:3005 DPM1 dolichyl-phosphate mannosyltransferase subunit 1, catalytic protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "MPDS|CDGIE" DPM synthase complex, catalytic subunit dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit Glycosyltransferase family 2 428 1999-02-23 2016-07-20 2016-10-05 8813 ENSG00000000419 OTTHUMG00000032742 uc002xvw.2 AF007875 NM_003859 "CCDS13434|CCDS82628" O60762 "9223280|9535917" MGI:1330239 RGD:1310120 Congenital Disorder of Glycosylation pages|http://www.euroglycanet.org/ DPM1 603503 121167 2.4.1.83 +HGNC:3006 DPM2 dolichyl-phosphate mannosyltransferase subunit 2, regulatory protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "MGC21559|MGC111193" DPM synthase complex subunit dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit 1999-02-23 2016-07-20 2016-10-05 8818 ENSG00000136908 OTTHUMG00000020725 uc004bsv.3 AB013361 NM_003863 CCDS6886 O94777 9724629 MGI:1330238 RGD:2514 DPM2 603564 331676 +HGNC:3007 DPM3 dolichyl-phosphate mannosyltransferase subunit 3 protein-coding gene gene with protein product Approved 1q22 01q22 "MGC34275|MGC125904|MGC125905" DPM synthase complex subunit dolichyl-phosphate mannosyltransferase polypeptide 3 2000-06-29 2016-02-23 2016-02-23 54344 ENSG00000179085 OTTHUMG00000035335 uc057lmb.1 AB028128 NM_153741 "CCDS1094|CCDS1095" Q9P2X0 10835346 MGI:1915813 RGD:1561807 Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=DPM3 DPM3 605951 269756 +HGNC:3008 DPP3 dipeptidyl peptidase 3 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "dipeptidylpeptidase III|dipeptidylpeptidase 3|dipeptidyl-peptidase 3" 1999-05-25 2016-02-05 2016-02-05 10072 ENSG00000254986 OTTHUMG00000167143 uc058dxl.1 AB017970 NM_005700 "CCDS8141|CCDS58147" Q9NY33 10773679 MGI:1922471 RGD:621127 DPP3 606818 M49.001 objectId:2355 3.4.14.4 +HGNC:51349 DPP3P1 dipeptidyl peptidase 3 pseudogene 1 pseudogene pseudogene Approved 4q13.1 04q13.1 dipeptidyl-peptidase 3 pseudogene 1 2014-10-13 2016-02-05 2016-02-05 391657 ENSG00000250768 OTTHUMG00000160714 NG_022059 PGOHUM00000300226 +HGNC:51350 DPP3P2 dipeptidyl peptidase 3 pseudogene 2 pseudogene pseudogene Approved 9q21.13 09q21.13 dipeptidyl-peptidase 3 pseudogene 2 2014-10-13 2016-02-05 2016-02-05 138971 ENSG00000221844 OTTHUMG00000020020 NG_021624 +HGNC:3009 DPP4 dipeptidyl peptidase 4 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 DPPIV "CD26|ADCP2" "dipeptidylpeptidase IV (CD26, adenosine deaminase complexing protein 2)|adenosine deaminase complexing protein 2|dipeptidyl-peptidase 4" "CD molecules|DASH family" "471|1205" 1990-03-05 2016-02-05 2016-02-05 1803 ENSG00000197635 OTTHUMG00000132056 uc002ubz.4 M74777 NM_001935 CCDS2216 P27487 8101391 MGI:94919 RGD:2515 DPP4 102720 S09.003 objectId:1612 CD26 3.4.14.5 +HGNC:3010 DPP6 dipeptidyl peptidase like 6 protein-coding gene gene with protein product Approved 7q36.2 07q36.2 "DPPX|DPL1" "dipeptidylpeptidase VI|dipeptidylpeptidase 6|dipeptidyl-peptidase 6|dipeptidyl peptidase 6" "Potassium voltage-gated channel regulatory subunits|DASH family" "858|1205" 1993-02-11 2016-02-08 2016-02-08 1804 ENSG00000130226 OTTHUMG00000151511 uc003wlk.4 M96859 NM_130797 "CCDS75682|CCDS75683|CCDS75684|CCDS78290|CCDS78291" P42658 "1729689|23593319" MGI:94921 RGD:68402 DPP6 126141 232182 S09.973 +HGNC:14892 DPP7 dipeptidyl peptidase 7 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "DPPII|DPP2" dipeptidylpeptidase 7 DASH family 1205 2001-04-20 2016-02-08 2016-02-08 29952 ENSG00000176978 OTTHUMG00000020977 uc004clh.4 AF154502 NM_013379 CCDS7030 Q9UHL4 "10477574|11139392" MGI:1933213 RGD:71073 DPP7 610537 S28.002 objectId:1605 +HGNC:16490 DPP8 dipeptidyl peptidase 8 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "DP8|DPRP1|MSTP141|FLJ14920|FLJ20283|MGC26191" "dipeptidyl peptidase VIII|dipeptidyl peptidase IV-related protein-1|prolyl dipeptidase DPP8" "dipeptidylpeptidase 8|dipeptidyl-peptidase 8" DASH family 1205 2001-09-04 2016-02-05 2016-10-05 54878 ENSG00000074603 OTTHUMG00000133150 uc002aov.4 AF221634 NM_017743 "CCDS10207|CCDS10208|CCDS10209|CCDS10210" Q6V1X1 11012666 MGI:1921638 RGD:1310901 DPP8 606819 S09.018 objectId:2356 3.4.14.5 +HGNC:18648 DPP9 dipeptidyl peptidase 9 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 dipeptidylpeptidase 9 DASH family 1205 2002-05-21 2016-02-08 2016-02-08 91039 ENSG00000142002 OTTHUMG00000182040 uc002mba.5 AF452102 XM_017027453 CCDS45928 Q86TI2 MGI:2443967 RGD:1588575 DPP9 608258 353250 S09.019 objectId:2357 3.4.14.5 +HGNC:50706 DPP9-AS1 DPP9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19p13.3 19p13.3 2014-06-11 2014-06-11 100131094 ENSG00000205790 OTTHUMG00000182047 NM_001242901 +HGNC:20823 DPP10 dipeptidyl peptidase like 10 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "DPRP3|DPL2|DPPY" "dipeptidylpeptidase 10|dipeptidyl-peptidase 10|dipeptidyl-peptidase 10 (inactive)" "Potassium voltage-gated channel regulatory subunits|DASH family" "858|1205" 2003-06-19 2016-02-08 2016-02-08 57628 ENSG00000175497 OTTHUMG00000153294 uc002tla.3 AY172661 NM_020868 "CCDS33278|CCDS46400|CCDS54388|CCDS54389" Q8N608 "10819331|12662155|26209633" MGI:2442409 RGD:1306427 DPP10 608209 S09.974 +HGNC:40941 DPP10-AS1 DPP10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q14.1 02q14.1 2013-10-14 2014-11-19 389023 ENSG00000235026 OTTHUMG00000153346 NR_036580 +HGNC:40940 DPP10-AS2 DPP10 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 2q14.1 02q14.1 2013-10-14 2015-07-29 106478969 ENSG00000235717 OTTHUMG00000153283 +HGNC:40939 DPP10-AS3 DPP10 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 2q14.1 02q14.1 2013-10-14 2014-11-19 101927591 ENSG00000231538 OTTHUMG00000153281 NR_132105 +HGNC:19197 DPPA2 developmental pluripotency associated 2 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 "PESCRG1|CT100" cancer/testis antigen 100 2005-01-19 2010-05-04 151871 ENSG00000163530 OTTHUMG00000159227 uc003dxo.3 AY283672 NM_138815 CCDS2956 Q7Z7J5 15583978 MGI:2157523 DPPA2 614445 +HGNC:38448 DPPA2P1 developmental pluripotency associated 2 pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 2010-05-04 2014-11-19 100421137 ENSG00000223915 OTTHUMG00000036323 NG_021938 PGOHUM00000233959 +HGNC:44627 DPPA2P2 developmental pluripotency associated 2 pseudogene 2 pseudogene pseudogene Approved 1p36.11 01p36.11 2012-11-22 2012-11-22 100128503 ENSG00000224129 OTTHUMG00000003551 NG_012273 PGOHUM00000243942 +HGNC:44628 DPPA2P3 developmental pluripotency associated 2 pseudogene 3 pseudogene pseudogene Approved 3q29 03q29 2012-11-22 2012-11-22 100128023 ENSG00000224403 OTTHUMG00000155990 NR_027764 PGOHUM00000237905 +HGNC:44629 DPPA2P4 developmental pluripotency associated 2 pseudogene 4 pseudogene pseudogene Approved 16q13 16q13 2012-11-22 2012-11-22 100131777 ENSG00000261429 OTTHUMG00000176801 NG_012309 PGOHUM00000249145 +HGNC:19199 DPPA3 developmental pluripotency associated 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 Stella 2003-07-09 2015-08-25 359787 ENSG00000187569 OTTHUMG00000168434 uc001qtf.4 AY317075 NM_199286 CCDS8582 Q6W0C5 MGI:1920958 RGD:1310932 DPPA3 608408 +HGNC:32345 DPPA3P1 developmental pluripotency associated 3 pseudogene 1 pseudogene pseudogene Approved Xq22.2 Xq22.2 2011-02-21 2012-10-16 728493 ENSG00000227067 OTTHUMG00000022118 NG_007153 +HGNC:20417 DPPA3P2 developmental pluripotency associated 3 pseudogene 2 pseudogene pseudogene Approved 14q13.3 14q13.3 STELLAR 2012-04-27 2012-07-04 400206 ENSG00000188831 OTTHUMG00000170728 NG_023379 +HGNC:49062 DPPA3P3 developmental pluripotency associated 3 pseudogene 3 pseudogene pseudogene Approved 13q31.1 13q31.1 2013-08-20 2013-08-20 106481963 ENSG00000270415 OTTHUMG00000184734 NG_043274 PGOHUM00000248447 +HGNC:19200 DPPA4 developmental pluripotency associated 4 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 FLJ10713 2004-02-26 2015-09-11 55211 ENSG00000121570 OTTHUMG00000159222 uc003dxq.4 AK001575 NM_018189 CCDS33814 Q7L190 MGI:2157525 RGD:1595070 DPPA4 614125 +HGNC:44903 DPPA4P1 developmental pluripotency associated 4 pseudogene 1 pseudogene pseudogene Approved 3p14.1 03p14.1 2012-12-17 2012-12-17 100421156 NG_025704 PGOHUM00000238051 +HGNC:19201 DPPA5 developmental pluripotency associated 5 protein-coding gene gene with protein product Approved 6q13 06q13 Esg1 2003-07-23 2015-09-11 340168 ENSG00000203909 OTTHUMG00000015025 uc003pgs.3 NM_001025290 CCDS34483 A6NC42 MGI:101800 RGD:1305838 DPPA5 611111 +HGNC:43752 DPPA5P1 developmental pluripotency associated 5 pseudogene 1 pseudogene pseudogene Approved 19q13.41 19q13.41 2012-02-22 2015-03-27 646382 ENSG00000269776 OTTHUMG00000182671 NG_028001 17913455 PGOHUM00000295089 +HGNC:43754 DPPA5P2 developmental pluripotency associated 5 pseudogene 2 pseudogene pseudogene Approved 15q21.1 15q21.1 2012-02-22 2012-04-13 100874380 ENSG00000259427 OTTHUMG00000172028 NG_032564 17913455 PGOHUM00000247107 +HGNC:44688 DPPA5P3 developmental pluripotency associated 5 pseudogene 3 pseudogene pseudogene Approved 10p15.1 10p15.1 2012-12-04 2014-01-31 100528006 NG_028003 PGOHUM00000238343 +HGNC:49665 DPPA5P4 developmental pluripotency associated 5 pseudogene 4 pseudogene pseudogene Approved 14q24.3 14q24.3 2014-01-31 2014-01-31 646701 ENSG00000119660 OTTHUMG00000171866 NG_027999 PGOHUM00000262042 +HGNC:32166 DPRX divergent-paired related homeobox protein-coding gene gene with protein product Approved 19q13.42 19q13.42 PRD class homeoboxes and pseudogenes 521 2005-08-08 2014-11-19 503834 ENSG00000204595 OTTHUMG00000170632 uc002qcf.1 NM_001012728 CCDS33103 A6NFQ7 DPRX 611165 8529 +HGNC:32167 DPRXP1 divergent-paired related homeobox pseudogene 1 pseudogene pseudogene Approved 2q32.1 02q32.1 PRD class homeoboxes and pseudogenes 521 2005-08-08 2016-08-01 503641 ENSG00000224323 OTTHUMG00000154252 NG_004847 8357 PGOHUM00000298257 +HGNC:32168 DPRXP2 divergent-paired related homeobox pseudogene 2 pseudogene pseudogene Approved 6p21.31 06p21.31 PRD class homeoboxes and pseudogenes 521 2005-08-08 2011-06-20 503643 ENSG00000271304 OTTHUMG00000185252 NG_004848 8358 +HGNC:32169 DPRXP3 divergent-paired related homeobox pseudogene 3 pseudogene pseudogene Approved 14q13.2 14q13.2 PRD class homeoboxes and pseudogenes 521 2005-08-08 2011-06-20 503644 ENSG00000282308 OTTHUMG00000191402 NG_004849 8359 +HGNC:32170 DPRXP4 divergent-paired related homeobox pseudogene 4 pseudogene pseudogene Approved 17q11.2 17q11.2 PRD class homeoboxes and pseudogenes 521 2005-08-08 2011-06-20 503645 ENSG00000264743 OTTHUMG00000179181 NR_002221 8360 +HGNC:32171 DPRXP5 divergent-paired related homeobox pseudogene 5 pseudogene pseudogene Approved 21q22.13 21q22.13 PRD class homeoboxes and pseudogenes 521 2005-08-08 2016-07-22 503646 ENSG00000270652 OTTHUMG00000185257 NG_004850 8361 PGOHUM00000297378 +HGNC:32172 DPRXP6 divergent-paired related homeobox pseudogene 6 pseudogene pseudogene Approved Xp11.4 Xp11.4 PRD class homeoboxes and pseudogenes 521 2005-08-08 2011-06-20 503647 ENSG00000270791 OTTHUMG00000185001 NG_004851 8362 +HGNC:32173 DPRXP7 divergent-paired related homeobox pseudogene 7 pseudogene pseudogene Approved Xq23 Xq23 PRD class homeoboxes and pseudogenes 521 2005-08-08 2011-06-20 503648 ENSG00000271464 OTTHUMG00000185258 NG_004852 8363 +HGNC:3011 DPT dermatopontin protein-coding gene gene with protein product Approved 1q24.2 01q24.2 1993-08-24 2016-10-05 1805 ENSG00000143196 OTTHUMG00000034554 uc001gfp.4 BC033736 NM_001937 CCDS1275 Q07507 8104875 MGI:1928392 RGD:1307176 DPT 125597 +HGNC:22205 DPY19L1 dpy-19 like 1 protein-coding gene gene with protein product Approved 7p14.2 07p14.2 KIAA0877 dpy-19 like 1 (C. elegans) 2005-07-19 2016-07-25 2016-07-26 23333 ENSG00000173852 OTTHUMG00000154888 uc003tem.5 AB020684 XM_011515245 CCDS43567 Q2PZI1 22028030 MGI:1915685 RGD:1305822 DPY19L1 613892 2.4.1.- +HGNC:22395 DPY19L1P1 DPY19L1 pseudogene 1 pseudogene pseudogene Approved 7p14.3 07p14.3 dpy-19-like 1 pseudogene 1 (C. elegans) 2005-07-19 2013-09-12 2015-03-10 100129460 ENSG00000229358 OTTHUMG00000152928 NG_008293 PGOHUM00000302091 +HGNC:22851 DPY19L1P2 DPY19L1 pseudogene 2 pseudogene pseudogene Approved 7p14.3 07p14.3 THC1072510 dpy-19-like 1 pseudogene 2 (C. elegans) 2005-07-19 2013-09-12 2015-07-30 102724668 ENSG00000231952 OTTHUMG00000152927 NR_132360 PGOHUM00000302575 +HGNC:19414 DPY19L2 dpy-19 like 2 protein-coding gene gene with protein product Approved 12q14.2 12q14.2 "FLJ32949|SPATA34" spermatogenesis associated 34 dpy-19 like 2 (C. elegans) 2005-07-19 2016-04-14 2016-04-14 283417 ENSG00000177990 OTTHUMG00000168712 uc001srp.2 NM_173812 CCDS31851 Q6NUT2 "12975309|21397064" MGI:2444662 RGD:1564311 DPY19L2 613893 265487 +HGNC:22305 DPY19L2P1 DPY19L2 pseudogene 1 pseudogene pseudogene Approved 7p14.2 07p14.2 dpy-19-like 2 pseudogene 1 (C. elegans) 2005-07-19 2013-09-12 2015-03-16 554236 ENSG00000189212 OTTHUMG00000155026 BC066987 NR_002833 Q6NXN4 PGOHUM00000302098 +HGNC:21764 DPY19L2P2 DPY19L2 pseudogene 2 pseudogene pseudogene Approved 7q22.1 07q22.1 "DKFZp434E092|FLJ36166" dpy-19-like 2 pseudogene 2 (C. elegans) 2005-07-19 2013-09-12 2015-03-10 349152 ENSG00000170629 OTTHUMG00000157200 AL834175 NM_182634 Q6ZN68 PGOHUM00000302384 +HGNC:22367 DPY19L2P3 DPY19L2 pseudogene 3 pseudogene pseudogene Approved 7p14.3 07p14.3 dpy-19-like 2 pseudogene 3 (C. elegans) 2005-07-19 2013-09-12 2015-03-26 442524 ENSG00000227855 OTTHUMG00000152749 DQ287933 NR_036482 PGOHUM00000302565 +HGNC:22176 DPY19L2P4 DPY19L2 pseudogene 4 pseudogene pseudogene Approved 7q21.13 07q21.13 IMAGE:5295327 dpy-19-like 2 pseudogene 4 (C. elegans) 2005-07-19 2013-09-12 2015-03-16 442523 ENSG00000235436 OTTHUMG00000158346 BC031277 NR_003551 PGOHUM00000302843 +HGNC:51620 DPY19L2P5 DPY19L2 pseudogene 5 pseudogene pseudogene Approved 10q22.3 10q22.3 2015-03-26 2015-03-26 106480421 ENSG00000225100 OTTHUMG00000018594 NG_043210 PGOHUM00000289923 +HGNC:27120 DPY19L3 dpy-19 like 3 (C. elegans) protein-coding gene gene with protein product Approved 19q13.11 19q13.11 2005-07-19 2016-01-18 2016-04-14 147991 ENSG00000178904 OTTHUMG00000180222 uc002ntg.4 NM_207325 CCDS12422 Q6ZPD9 26764097 MGI:2443952 RGD:1308334 DPY19L3 613894 +HGNC:27829 DPY19L4 dpy-19 like 4 (C. elegans) protein-coding gene gene with protein product Approved 8q22.1 08q22.1 2005-07-19 2016-01-18 2016-01-18 286148 ENSG00000156162 OTTHUMG00000164589 uc003ygx.3 NM_181787 CCDS34924 Q7Z388 MGI:2685869 RGD:1305828 DPY19L4 613895 +HGNC:24590 DPY30 dpy-30, histone methyltransferase complex regulatory subunit protein-coding gene gene with protein product Approved 2p22.3 02p22.3 "Saf19|HDPY-30|Cps25" dpy-30 homolog (C. elegans) 2007-10-11 2015-11-26 2015-11-26 84661 ENSG00000162961 OTTHUMG00000128457 uc061hwx.1 NM_032574 CCDS1777 Q9C005 "16260194|23872946" MGI:1913560 RGD:708575 DPY30 612032 +HGNC:3012 DPYD dihydropyrimidine dehydrogenase protein-coding gene gene with protein product Approved 1p21.3 01p21.3 DPD 1994-07-07 2016-10-12 1806 ENSG00000188641 OTTHUMG00000039683 uc001drv.4 U20938 NM_000110 "CCDS30777|CCDS53346" Q12882 7713523 MGI:2139667 RGD:621218 "UMD Locus Specific Databases|http://www.umd.be/|LRG_722|http://www.lrg-sequence.org/LRG/LRG_722" DPYD 612779 121171 1.3.1.2 +HGNC:40195 DPYD-AS1 DPYD antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p21.3 01p21.3 DPYD antisense RNA 1 (non-protein coding) 2011-05-20 2012-08-15 2014-11-19 100873932 ENSG00000232878 OTTHUMG00000039682 uc031pne.1 NR_046590 +HGNC:40196 DPYD-AS2 DPYD antisense RNA 2 non-coding RNA RNA, long non-coding Approved 1p21.3 01p21.3 DPYD antisense RNA 2 (non-protein coding) 2011-05-20 2012-08-15 2014-11-19 100873933 ENSG00000235777 OTTHUMG00000039680 uc031uik.2 NR_046591 +HGNC:41326 DPYD-IT1 DPYD intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p21.3 01p21.3 DPYD intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100874267 ENSG00000232542 OTTHUMG00000039679 uc057iot.1 +HGNC:3013 DPYS dihydropyrimidinase protein-coding gene gene with protein product Approved 8q22.3 08q22.3 DHPase 1997-02-27 2016-10-05 1807 ENSG00000147647 OTTHUMG00000164891 uc003yly.5 D78011 NM_001385 CCDS6302 Q14117 8973361 MGI:1928679 RGD:68376 DPYS 613326 121174 M38.973 +HGNC:3014 DPYSL2 dihydropyrimidinase like 2 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "DRP-2|DHPRP2|CRMP2|DRP2" dihydropyrimidinase-like 2 1997-02-27 2015-11-25 2016-10-05 1808 ENSG00000092964 OTTHUMG00000099439 uc003xfb.3 D78013 NM_001386 "CCDS6051|CCDS59096|CCDS83268" Q16555 8973361 MGI:1349763 RGD:2517 DPYSL2 602463 M38.975 +HGNC:3015 DPYSL3 dihydropyrimidinase like 3 protein-coding gene gene with protein product Approved 5q32 05q32 "DRP-3|ULIP|CRMP4" dihydropyrimidinase-like 3 1997-02-27 2015-11-25 2015-11-25 1809 ENSG00000113657 OTTHUMG00000163437 uc003lon.2 D78014 NM_001387 "CCDS43381|CCDS56387" Q14195 "8973361|9115293" MGI:1349762 RGD:2410 DPYSL3 601168 M38.976 +HGNC:3016 DPYSL4 dihydropyrimidinase like 4 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "ULIP4|DRP-4" dihydropyrimidinase-like 4 1999-07-06 2015-11-25 2016-10-05 10570 ENSG00000151640 OTTHUMG00000019283 uc009ybb.4 AB006713 XM_017015482 CCDS7665 O14531 "8973361|9652388" MGI:1349764 RGD:2409 DPYSL4 608407 M38.977 +HGNC:20637 DPYSL5 dihydropyrimidinase like 5 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "CRMP5|Ulip6|CRMP-5|CRAM" dihydropyrimidinase-like 5 2003-03-12 2015-11-25 2015-11-25 56896 ENSG00000157851 OTTHUMG00000097071 uc002rhu.4 AF264015 NM_020134 CCDS1730 Q9BPU6 "10851247|11034345" MGI:1929772 RGD:620467 DPYSL5 608383 M38.978 +HGNC:20410 DQX1 DEAQ-box RNA dependent ATPase 1 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 FLJ23757 DEAQ box polypeptide 1 (RNA-dependent ATPase) 2004-02-04 2016-01-07 2016-10-05 165545 ENSG00000144045 OTTHUMG00000129965 uc010yrw.3 AK074337 NM_133637 CCDS1949 Q8TE96 MGI:2136388 RGD:1591766 DQX1 +HGNC:3017 DR1 down-regulator of transcription 1 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "NC2-BETA|NC2B" "negative cofactor 2|negative cofactor 2 beta" down-regulator of transcription 1, TBP-binding (negative cofactor 2) ATAC complex 1058 1996-07-11 2015-08-11 2015-08-25 1810 ENSG00000117505 OTTHUMG00000010862 uc001dpu.4 M97388 NM_001938 CCDS744 Q01658 "1339312|9040789" MGI:1100515 RGD:1305201 DR1 601482 +HGNC:27082 DRAIC downregulated RNA in cancer, inhibitor of cell invasion and migration non-coding RNA RNA, long non-coding Approved 15q23 15q23 downregulated RNA in androgen independent cells Long non-coding RNAs 788 2015-03-19 2015-03-19 145837 ENSG00000245750 OTTHUMG00000172098 BC104435 NR_026979 25700553 616387 +HGNC:25645 DRAM1 DNA damage regulated autophagy modulator 1 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 "FLJ11259|DRAM" damage-regulated autophagy modulator DNA-damage regulated autophagy modulator 1 2009-06-12 2015-11-16 2015-11-16 55332 ENSG00000136048 OTTHUMG00000170447 uc001tix.4 "BC018435|DA721965" NM_018370 CCDS41823 Q8N682 16839881 MGI:1918962 RGD:1598133 DRAM1 610776 +HGNC:28769 DRAM2 DNA damage regulated autophagy modulator 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "MGC54289|PRO180|WWFQ154|RP5-1180E21.1" TMEM77 "transmembrane protein 77|DNA-damage regulated autophagy modulator 2" 2005-09-27 2009-06-12 2015-11-16 2015-11-16 128338 ENSG00000156171 OTTHUMG00000011911 uc001ead.5 AY336747 NM_178454 CCDS30801 Q6UX65 12975309 MGI:1914421 RGD:1564099 DRAM2 613360 434553 +HGNC:3019 DRAP1 DR1 associated protein 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 NC2-alpha "negative cofactor 2 alpha|DR1-associated corepressor" 1998-09-22 2016-01-19 2016-10-05 10589 ENSG00000175550 OTTHUMG00000166723 uc001ogj.3 U41843 NM_006442 CCDS8123 Q14919 8608938 MGI:1913806 RGD:1308477 DRAP1 602289 +HGNC:25054 DRAXIN dorsal inhibitory axon guidance protein protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "FLJ34999|Draxin|Neucrin" "dorsal repulsive axon guidance protein|neural tissue-specific cysteine-rich protein" C1orf187 chromosome 1 open reading frame 187 2005-08-12 2012-08-14 2012-08-14 2014-11-19 374946 ENSG00000162490 OTTHUMG00000002227 uc001ass.4 AY358750 NM_198545 CCDS135 Q8NBI3 19150847 MGI:1917683 RGD:1585098 612682 +HGNC:44334 DRAXINP1 dorsal inhibitory axon guidance protein pseudogene 1 pseudogene pseudogene Approved Xp22.31 Xp22.31 2012-08-14 2012-08-14 100128801 ENSG00000225574 OTTHUMG00000021108 NG_022580 PGOHUM00000241180 +HGNC:24245 DRC1 dynein regulatory complex subunit 1 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "MGC16372|FLJ32660|CILD21" "C2orf39|CCDC164" "chromosome 2 open reading frame 39|coiled-coil domain containing 164|dynein regulatory complex subunit 1 homolog (Chlamydomonas)" Dynein regulatory complex 981 2006-07-03 2013-03-14 2014-07-18 2014-11-19 92749 ENSG00000157856 OTTHUMG00000125531 uc002rhg.2 AL833892 NM_145038 CCDS1723 Q96MC2 23354437 MGI:2685906 RGD:1359318 615288 330717 +HGNC:25384 DRC3 dynein regulatory complex subunit 3 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "DKFZP586M1120|CFAP134" LRRC48 leucine rich repeat containing 48 Dynein regulatory complex 981 2005-05-26 2015-10-05 2015-10-05 2015-10-05 83450 ENSG00000171962 OTTHUMG00000059355 AK093317 NM_031294 "CCDS45622|CCDS45623" Q9H069 "11997338|23354437" MGI:1921915 RGD:1309150 +HGNC:25289 DRC7 dynein regulatory complex subunit 7 protein-coding gene gene with protein product Approved 16q21 16q21 "DKFZp434I099|FAP50|CFAP50" "C16orf50|CCDC135" "chromosome 16 open reading frame 50|coiled-coil domain containing 135" Dynein regulatory complex 981 2005-03-10 2014-09-03 2014-09-03 2016-10-05 84229 ENSG00000159625 OTTHUMG00000133473 BC036667 NM_032269 "CCDS10787|CCDS73894" Q8IY82 "21289096|22983010" MGI:2685616 RGD:1565601 +HGNC:3020 DRD1 dopamine receptor D1 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 Dopamine receptors 181 1990-04-27 2016-10-05 1812 ENSG00000184845 OTTHUMG00000130557 uc003mcz.4 X55760 NM_000794 CCDS4393 P21728 MGI:99578 RGD:2518 DRD1 126449 objectId:214 +HGNC:3021 DRD1L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3023 DRD2 dopamine receptor D2 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 Dopamine receptors 181 1989-02-23 2016-01-15 1813 ENSG00000149295 OTTHUMG00000167717 uc001poa.5 M29066 NM_000795 "CCDS8361|CCDS8362" P14416 MGI:94924 RGD:2520 DRD2 126450 121177 objectId:215 +HGNC:3024 DRD3 dopamine receptor D3 protein-coding gene gene with protein product Approved 3q13.31 03q13.31 Dopamine receptors 181 1991-05-06 2016-10-05 1814 ENSG00000151577 OTTHUMG00000159334 uc010hqn.2 NM_000796.3 "CCDS2978|CCDS33829" P35462 1916765 MGI:94925 RGD:2521 DRD3 126451 121179 objectId:216 +HGNC:3025 DRD4 dopamine receptor D4 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 Dopamine receptors 181 1991-07-16 2015-08-25 1815 ENSG00000069696 OTTHUMG00000133312 uc001lqp.3 L12398 NM_000797 CCDS7710 P21917 MGI:94926 RGD:2522 DRD4 126452 objectId:217 +HGNC:3026 DRD5 dopamine receptor D5 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 DRD1B DRD1L2 Dopamine receptors 181 1991-06-05 2015-08-25 1816 ENSG00000169676 OTTHUMG00000128489 uc003gmb.5 X58454 NM_000798 CCDS3405 P21918 1774076 MGI:94927 RGD:2523 DRD5 126453 objectId:218 +HGNC:3027 DRD5P1 dopamine receptor D5 pseudogene 1 pseudogene pseudogene Approved 2p11.2 02p11.2 1992-01-15 2016-10-05 1817 ENSG00000184303 OTTHUMG00000155074 NG_005112 1387108 DRD5P1 PGOHUM00000240174 +HGNC:3028 DRD5P2 dopamine receptor D5 pseudogene 2 pseudogene pseudogene Approved 1q21.1 01q21.1 1992-01-15 2016-10-05 1818 ENSG00000175658 OTTHUMG00000013836 NR_111001 1387108 PGOHUM00000244982 +HGNC:3029 DRG1 developmentally regulated GTP binding protein 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 NEDD3 developmentally regulated GTP-binding protein 1 1994-01-21 2001-11-28 2014-11-18 4733 ENSG00000185721 OTTHUMG00000030792 uc003aku.4 AJ005940 NM_004147 CCDS13897 Q9Y295 "7929244|1449490" MGI:1343297 RGD:1304993 DRG1 603952 +HGNC:3030 DRG2 developmentally regulated GTP binding protein 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 developmentally regulated GTP-binding protein 2 1997-10-21 2001-11-28 2016-10-05 1819 ENSG00000108591 OTTHUMG00000059399 uc002gsh.3 X80754 NM_001388 "CCDS11191|CCDS82082" P55039 "9605870|7929244" MGI:1342307 RGD:1562380 DRG2 602986 +HGNC:21536 DRGX dorsal root ganglia homeobox protein-coding gene gene with protein product Approved 10q11.23 10q11.23 DRG11 paired-like homeodomain trancription factor DRG11 PRRXL1 paired related homeobox-like 1 PRD class homeoboxes and pseudogenes 521 2004-02-02 2007-07-26 2007-07-26 2016-04-25 644168 ENSG00000165606 OTTHUMG00000018192 uc057tel.1 XM_060970 CCDS44388 A6NNA5 7496632 MGI:2148204 RGD:628616 DRGX 606701 8579 +HGNC:28031 DRICH1 aspartate rich 1 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 C22orf43 chromosome 22 open reading frame 43 2009-04-06 2014-02-19 2016-06-06 2016-06-06 51233 ENSG00000189269 OTTHUMG00000186352 BC056888 NM_016449 CCDS42985 Q6PGQ1 11230166 +HGNC:17904 DROSHA drosha ribonuclease III protein-coding gene gene with protein product Approved 5p13.3 05p13.3 "RNASE3L|Etohi2|HSA242976|RN3" "drosha, ribonuclease type III|drosha, double-stranded RNA-specific endoribonuclease" RNASEN "ribonuclease type III, nuclear|drosha, ribonuclease type III" 2005-05-12 2010-10-28 2016-01-21 2016-10-05 29102 ENSG00000113360 OTTHUMG00000161976 uc003jhg.3 AF116910 NM_013235 "CCDS47194|CCDS47195" Q9NRR4 "10713462|10948199" MGI:1261425 RGD:1307626 DROSHA 608828 3.1.26.3 +HGNC:3032 DRP2 dystrophin related protein 2 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 Zinc fingers ZZ-type 91 1996-07-17 2016-10-05 1821 ENSG00000102385 OTTHUMG00000022020 uc065agk.1 U43519 NM_001939 "CCDS14480|CCDS55465" Q13474 8640231 MGI:107432 RGD:621750 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DRP2 DRP2 300052 +HGNC:3035 DSC1 desmocollin 1 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 CDHF1 Desmosomal cadherins 1188 1991-09-25 2015-09-11 1823 ENSG00000134765 OTTHUMG00000131982 uc002kwn.4 AF293358 "NM_004948|NM_024421" "CCDS11894|CCDS11895" Q08554 8486729 MGI:109173 RGD:1310768 DSC1 125643 +HGNC:3036 DSC2 desmocollin 2 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 CDHF2 DSC3 Desmosomal cadherins 1188 1997-05-29 2016-10-12 1824 ENSG00000134755 OTTHUMG00000131981 uc002kwl.5 X56807 NM_004949 "CCDS11892|CCDS11893" Q02487 7774948 MGI:103221 RGD:1309426 "ARVD/C Genetic Variants Database|http://grenada.lumc.nl/LOVD2/ARVC/home.php?select_db=DSC2|LRG_400|http://www.lrg-sequence.org/LRG/LRG_400" DSC2 125645 121185 +HGNC:3037 DSC3 desmocollin 3 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 "CDHF3|DSC|DSC1|DSC2" DSC4 Desmosomal cadherins 1188 1991-03-04 2015-09-11 1825 ENSG00000134762 OTTHUMG00000179622 uc002kwj.5 X83929 "NM_001941|NM_024423" CCDS32810 Q14574 "7774948|8486729" MGI:1194993 RGD:1311782 DSC3 600271 220928 +HGNC:3039 DSCAM DS cell adhesion molecule protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "CHD2-42|CHD2-52" Down syndrome cell adhesion molecule "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 1998-06-10 2016-05-13 2016-10-05 1826 ENSG00000171587 OTTHUMG00000086732 uc002yyq.2 AF023449 NM_001389 CCDS42929 O60469 9426258 MGI:1196281 RGD:619992 DSCAM 602523 +HGNC:40197 DSCAM-AS1 DSCAM antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 M41 DSCAM antisense RNA 1 (non-protein coding) 2011-05-20 2012-08-15 2014-11-19 100506492 ENSG00000235123 OTTHUMG00000086733 uc002yys.3 NR_038896 +HGNC:41327 DSCAM-IT1 DSCAM intronic transcript 1 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 DSCAM intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100874326 ENSG00000233756 OTTHUMG00000086730 uc031rvs.1 NR_046774 +HGNC:14656 DSCAML1 DS cell adhesion molecule like 1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 KIAA1132 Down syndrome cell adhesion molecule like 1 "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2002-05-29 2016-05-13 2016-05-13 57453 ENSG00000177103 OTTHUMG00000167071 uc001prh.1 NM_020693 CCDS8384 Q8TD84 11453658 MGI:2150309 RGD:1304887 DSCAML1 611782 +HGNC:51116 DSCAS DSC1/DSC2 antisense RNA non-coding RNA RNA, long non-coding Approved 18q12.1 18q12.1 2014-07-30 2014-07-30 101927698 ENSG00000265888 OTTHUMG00000179623 NR_110785 +HGNC:24453 DSCC1 DNA replication and sister chromatid cohesion 1 protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "DCC1|hDCC1|MGC5528" defective in sister chromatid cohesion homolog 1 (S. cerevisiae) defective in sister chromatid cohesion 1 homolog (S. cerevisiae) 2008-02-05 2013-05-24 2014-11-19 79075 ENSG00000136982 OTTHUMG00000165010 uc003yov.4 NM_024094 CCDS6330 Q9BVC3 "12766176|20826785" MGI:1919357 RGD:1561749 DSCC1 613203 +HGNC:3044 DSCR3 DSCR3 arrestin fold containing protein-coding gene gene with protein product Approved 21q22.13 21q22.13 DCRA Down syndrome critical region 3 2000-03-06 2016-02-15 2016-10-05 10311 ENSG00000157538 OTTHUMG00000086659 uc002ywf.2 D87343 XM_005260909 "CCDS33553|CCDS82671|CCDS82672|CCDS82673" O14972 "9399594|19794886" MGI:1206040 RGD:1306879 DSCR3 605298 +HGNC:3045 DSCR4 Down syndrome critical region 4 protein-coding gene gene with protein product Approved 21q22.13 21q22.13 DCRB 2000-03-06 2014-11-14 2016-10-05 10281 ENSG00000184029 OTTHUMG00000086673 uc002ywp.3 AB000099 NM_005867 CCDS33554 P56555 9455479 DSCR4 604829 +HGNC:41328 DSCR4-IT1 DSCR4 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 21q22.13 21q22.13 DSCR4 intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100874327 ENSG00000223608 OTTHUMG00000086672 uc062abc.1 +HGNC:16707 DSCR8 Down syndrome critical region 8 other unknown Approved 21q22.13 21q22.13 "MTAG2|CT25.1a|CT25.1b|MMA-1a|MMA-1b" "cancer/testis antigen family 25, member 1a|cancer/testis antigen family 25, member 1b|malignant melanoma-associated 1" C21orf65 chromosome 21 open reading frame 65 2001-09-28 2014-11-14 2016-10-05 84677 ENSG00000198054 OTTHUMG00000090610 uc062abe.1 AF321193 NR_026838 Q96T75 "9503011|12036297|11920614" DSCR8 613396 +HGNC:16301 DSCR9 Down syndrome critical region 9 (non-protein coding) non-coding RNA RNA, long non-coding Approved 21q22.13 21q22.13 NCRNA00038 non-protein coding RNA 38 2002-08-15 2014-11-14 2016-10-05 257203 ENSG00000230366 OTTHUMG00000086655 uc031rvh.2 AB066100 NR_026719 P59020 12168953 +HGNC:16302 DSCR10 Down syndrome critical region 10 (non-protein coding) non-coding RNA RNA, long non-coding Approved 21q22.13 21q22.13 Down syndrome critical region gene 10 2002-08-15 2014-11-14 2014-11-14 259234 ENSG00000233316 OTTHUMG00000090611 uc010gnt.2 AB066291 NR_027695.1 P59022 12168953 +HGNC:21144 DSE dermatan sulfate epimerase protein-coding gene gene with protein product Approved 6q22.1 06q22.1 DSEPI SART2 squamous cell carcinoma antigen recognized by T cells 2 2003-05-20 2007-01-29 2007-01-29 2016-10-05 29940 ENSG00000111817 OTTHUMG00000015434 uc003pws.5 AF098066 NM_013352 CCDS5107 Q9UL01 "11920522|16505484" MGI:2443455 RGD:1305079 DSE 605942 358666 5.1.3.19 +HGNC:18144 DSEL dermatan sulfate epimerase-like protein-coding gene gene with protein product Approved 18q22.1 18q22.1 "NCAG1|FLJ11477" C18orf4 chromosome 18 open reading frame 4 2002-02-12 2007-01-29 2007-01-29 2015-09-11 92126 ENSG00000171451 OTTHUMG00000132804 uc002lke.2 AF480435 NM_032160 CCDS11995 Q8IZU8 16505484 MGI:2442948 RGD:1307724 DSEL 611125 +HGNC:3048 DSG1 desmoglein 1 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 CDHF4 DSG Desmosomal cadherins 1188 1991-03-04 2015-09-11 1828 ENSG00000134760 OTTHUMG00000131983 uc002kwp.4 X56654 NM_001942 CCDS11896 Q02413 1889810 "MGI:2664357|MGI:2664358|MGI:94930" RGD:1309925 DSG1 125670 121189 +HGNC:51115 DSG1-AS1 DSG1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18q12.1 18q12.1 2014-07-30 2014-07-30 101927718 ENSG00000266729 OTTHUMG00000179625 NR_110788 +HGNC:3049 DSG2 desmoglein 2 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 CDHF5 Desmosomal cadherins 1188 1991-11-15 2016-10-12 1829 ENSG00000046604 OTTHUMG00000179649 uc002kwu.5 Z26317 NM_001943 CCDS42423 Q14126 1612610 MGI:1196466 RGD:1311143 "ARVD/C Genetic Variants Database|http://grenada.lumc.nl/LOVD2/ARVC/home.php?select_db=DSG2|LRG_397|http://www.lrg-sequence.org/LRG/LRG_397" DSG2 125671 121193 +HGNC:51311 DSG2-AS1 DSG2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18q12.1 18q12.1 2014-09-26 2014-09-26 100652770 ENSG00000264859 OTTHUMG00000179650 BC042986 NR_045216 +HGNC:3050 DSG3 desmoglein 3 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 CDHF6 pemphigus vulgaris antigen desmoglein 3 (pemphigus vulgaris antigen) Desmosomal cadherins 1188 1992-08-25 2010-06-24 2015-09-11 1830 ENSG00000134757 OTTHUMG00000131985 uc002kws.4 M76482 NM_001944 CCDS11898 P32926 1601426 MGI:99499 RGD:1592103 DSG3 169615 +HGNC:21307 DSG4 desmoglein 4 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 "CDHF13|LAH" Desmosomal cadherins 1188 2003-06-04 2015-09-11 147409 ENSG00000175065 OTTHUMG00000131979 uc002kwq.3 "AY177664|AY168788" NM_177986 "CCDS11897|CCDS45845" Q86SJ6 12648213 MGI:2661061 RGD:735015 DSG4 607892 159421 +HGNC:16165 DSN1 DSN1 homolog, MIS12 kinetochore complex component protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "dJ469A13.2|MIS13|KNL3|hKNL-3" kinetochore null 3 homolog (C. elegans) C20orf172 "chromosome 20 open reading frame 172|DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)" MIS12 kinetochore complex 1322 2001-07-17 2006-11-07 2015-07-03 2015-07-03 79980 ENSG00000149636 OTTHUMG00000032396 uc002xga.4 AK023408 NM_024918 "CCDS13286|CCDS46596|CCDS46597" Q9H410 "16585270|20819937" MGI:1914184 RGD:1565179 DSN1 609175 +HGNC:3052 DSP desmoplakin protein-coding gene gene with protein product Approved 6p24.3 06p24.3 "KPPS2|PPKS2|DPI|DPII" desmoplakin (DPI, DPII) Plakins 939 1991-03-04 2003-05-20 2016-10-12 1832 ENSG00000096696 OTTHUMG00000014212 uc003mxp.2 J05211 NM_004415 "CCDS4501|CCDS47368" P15924 1889810 MGI:109611 RGD:1305794 "ARVD/C Genetic Variants Database|http://grenada.lumc.nl/LOVD2/ARVC/home.php?select_db=DSP|LRG_423|http://www.lrg-sequence.org/LRG/LRG_423" DSP 125647 121196 +HGNC:3054 DSPP dentin sialophosphoprotein protein-coding gene gene with protein product Approved 4q22.1 04q22.1 DMP3 "DFNA39|DGI1" SIBLING family 1279 1997-01-08 2016-10-05 1834 ENSG00000152591 OTTHUMG00000161061 uc003hqu.3 AF163151 NM_014208 CCDS43248 Q9NZW4 "8995371|9533027" MGI:109172 RGD:2525 DSPP 125485 121202 +HGNC:1090 DST dystonin protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "BP240|KIAA0728|FLJ21489|FLJ13425|FLJ32235|FLJ30627|CATX-15|BPA|MACF2" BPAG1 bullous pemphigoid antigen 1, 230/240kDa "EF-hand domain containing|Plakins" "863|939" 1990-05-11 2004-07-01 2004-06-25 2014-11-19 667 ENSG00000151914 OTTHUMG00000014913 uc063peq.1 "M22942|M69225" NM_001723 "CCDS4959|CCDS47443|CCDS75474" Q03001 "2461961|2276744" MGI:104627 RGD:1306566 DST 113810 293042 +HGNC:15750 DSTN destrin, actin depolymerizing factor protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "ADF|ACTDP" destrin (actin depolymerizing factor) 2001-12-07 2016-04-05 2016-04-05 11034 ENSG00000125868 OTTHUMG00000031947 uc002wpr.4 S65738 NM_001011546 "CCDS13127|CCDS46580" P60981 "8399167|2156828" MGI:1929270 RGD:1588366 DSTN 609114 +HGNC:23769 DSTNP1 destrin, actin depolymerizing factor pseudogene 1 pseudogene pseudogene Approved 21q22.3 21q22.3 destrin (actin depolymerizing factor) pseudogene 1 2003-12-15 2016-06-27 2016-06-27 387492 ENSG00000230982 OTTHUMG00000048830 NG_028763 PGOHUM00000258117 +HGNC:34546 DSTNP2 destrin, actin depolymerizing factor pseudogene 2 pseudogene pseudogene Approved 12p13.31 12p13.31 destrin (actin depolymerizing factor) pseudogene 2 2010-09-30 2016-06-27 2016-10-05 171220 ENSG00000248593 OTTHUMG00000156666 U72518 NR_033796 PGOHUM00000239634 +HGNC:34547 DSTNP3 destrin, actin depolymerizing factor pseudogene 3 pseudogene pseudogene Approved 8q21.11 08q21.11 destrin (actin depolymerizing factor) pseudogene 3 2010-09-30 2016-06-27 2016-06-27 100287016 NG_028172 PGOHUM00000249715 +HGNC:44548 DSTNP4 destrin, actin depolymerizing factor pseudogene 4 pseudogene pseudogene Approved 3p22.2 03p22.2 destrin (actin depolymerizing factor) pseudogene 4 2012-11-15 2016-06-27 2016-06-27 729454 ENSG00000215034 OTTHUMG00000156247 PGOHUM00000237998 +HGNC:44549 DSTNP5 destrin, actin depolymerizing factor pseudogene 5 pseudogene pseudogene Approved 2q33.3 02q33.3 destrin (actin depolymerizing factor) pseudogene 5 2012-11-15 2016-06-27 2016-06-27 100132132 ENSG00000236681 OTTHUMG00000154541 NG_021600 PGOHUM00000241085 +HGNC:29043 DSTYK dual serine/threonine and tyrosine protein kinase protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "KIAA0472|DustyPK|RIP5" RIPK5 receptor interacting protein kinase 5 2004-08-02 2008-12-18 2008-12-18 2016-10-05 25778 ENSG00000133059 OTTHUMG00000037102 uc001hbw.4 AF068286 NM_015375 "CCDS1451|CCDS1452" Q6XUX3 15178406 MGI:1925064 RGD:735051 DSTYK 612666 406487 objectId:2008 +HGNC:16219 DTD1 D-tyrosyl-tRNA deacylase 1 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "DUEB|MGC119131|MGC41905|bA379J5.3|bA555E18.1|pqn-68" "C20orf88|HARS2" "chromosome 20 open reading frame 88|D-tyrosyl-tRNA deacylase 1 homolog (S. cerevisiae)" 2001-07-17 2007-02-23 2012-09-25 2014-11-19 92675 ENSG00000125821 OTTHUMG00000031980 uc002wrf.5 AF332356 NM_080820 CCDS13138 Q8TEA8 MGI:1913294 RGD:1311821 DTD1 610996 +HGNC:20277 DTD2 D-tyrosyl-tRNA deacylase 2 (putative) protein-coding gene gene with protein product Approved 14q12 14q12 MGC9912 C14orf126 chromosome 14 open reading frame 126 2003-01-17 2012-09-25 2012-09-25 2014-11-18 112487 ENSG00000129480 OTTHUMG00000140205 uc001wrj.5 BC010618 NM_080664 CCDS9643 Q96FN9 MGI:1923485 RGD:1309138 +HGNC:37261 DTHD1 death domain containing 1 protein-coding gene gene with protein product Approved 4p14 04p14 FLJ16686 2009-10-02 2015-08-25 401124 ENSG00000197057 OTTHUMG00000160371 uc021xne.2 AK094684 NM_001136536 CCDS54754 Q6ZMT9 MGI:4937018 RGD:2323176 DTHD1 616979 +HGNC:30288 DTL denticleless E3 ubiquitin protein ligase homolog protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "RAMP|L2DTL|DCAF2|CDT2" "RA regulated nuclear matrix associated protein|DDB1 and CUL4 associated factor 2" "denticleless homolog (Drosophila)|denticleless E3 ubiquitin protein ligase homolog (Drosophila)" "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2005-05-16 2016-01-19 2016-10-05 51514 ENSG00000143476 OTTHUMG00000037133 uc009xdc.5 AF195765 NM_016448 "CCDS1502|CCDS65778" Q9NZJ0 11278750 MGI:1924093 RGD:1310439 DTL 610617 +HGNC:3057 DTNA dystrobrevin alpha protein-coding gene gene with protein product Approved 18q12.1 18q12.1 "D18S892E|DTN|DTN-1|DTN-2|DTN-3|DRP3" dystrophin-related protein 3 dystrobrevin, alpha Zinc fingers ZZ-type 91 1998-02-11 2015-12-01 2016-10-12 1837 ENSG00000134769 OTTHUMG00000132309 uc002kyb.6 U84540 NM_001390 "CCDS11908|CCDS11909|CCDS42426|CCDS45848|CCDS56060|CCDS56061|CCDS56062|CCDS56063|CCDS59309|CCDS59310|CCDS59311|CCDS59312|CCDS59313|CCDS59314" Q9Y4J8 "8081380|15834686" MGI:106039 RGD:1561985 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/DTNA|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=DTNA|LRG_756|http://www.lrg-sequence.org/LRG/LRG_756" DTNA 601239 121219 +HGNC:3058 DTNB dystrobrevin beta protein-coding gene gene with protein product Approved 2p23.3 02p23.3 dystrobrevin, beta Zinc fingers ZZ-type 91 1998-02-11 2015-11-05 2016-10-05 1838 ENSG00000138101 OTTHUMG00000152129 uc002rgh.5 AF022728 NM_033147 "CCDS46233|CCDS46234|CCDS46235|CCDS46236|CCDS46237|CCDS58702|CCDS74496|CCDS82428" O60941 9419360 MGI:1203728 RGD:1309579 DTNB 602415 +HGNC:17328 DTNBP1 dystrobrevin binding protein 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "Dysbindin|My031|HPS7|DBND|BLOC1S8" "dysbindin-1|biogenesis of lysosomal organelles complex-1, subunit 8" Biogenesis of lysosomal organelles complex 1 452 2002-01-15 2016-10-12 84062 ENSG00000047579 OTTHUMG00000014295 uc031smw.2 AF394226 NM_032122 "CCDS4534|CCDS4535|CCDS75404|CCDS75405" Q96EV8 11316798 MGI:2137586 RGD:1590759 LRG_588|http://www.lrg-sequence.org/LRG/LRG_588 DTNBP1 607145 121227 +HGNC:30926 DTWD1 DTW domain containing 1 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "MDS009|MGC111207" 2005-07-21 2014-11-19 56986 ENSG00000104047 OTTHUMG00000131567 uc001zxq.4 BC032535 NM_020234 CCDS10132 Q8N5C7 MGI:1916435 RGD:1311144 DTWD1 +HGNC:19334 DTWD2 DTW domain containing 2 protein-coding gene gene with protein product Approved 5q23.1 05q23.1 FLJ33977 2005-07-21 2014-11-19 285605 ENSG00000169570 OTTHUMG00000162956 uc003ksa.4 NM_173666 "CCDS34216|CCDS78050" Q8NBA8 MGI:1916107 RGD:1306423 DTWD2 +HGNC:3060 DTX1 deltex E3 ubiquitin ligase 1 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 hDx-1 deltex homolog 1 (Drosophila) 1998-05-15 2016-06-10 2016-10-05 1840 ENSG00000135144 OTTHUMG00000169610 uc001tuk.2 AF053700 XM_011538009 CCDS9164 Q86Y01 "9590294|12670957" MGI:1352744 RGD:1585380 DTX1 602582 +HGNC:15973 DTX2 deltex E3 ubiquitin ligase 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "RNF58|KIAA1528" "deltex (Drosophila) homolog 2|deltex homolog 2 (Drosophila)|deltex 2, E3 ubiquitin ligase" Ring finger proteins 58 2001-08-13 2016-06-10 2016-07-25 113878 ENSG00000091073 OTTHUMG00000162594 uc003uff.5 XM_017011723 "CCDS5587|CCDS43605" Q86UW9 12670957 MGI:1921448 RGD:1561790 DTX2 613141 6.3.2.- +HGNC:42352 DTX2P1 DTX2 pseudogene 1 pseudogene pseudogene Approved 7q11.23 07q11.23 2011-06-29 2014-01-28 2014-01-28 107161144 ENSG00000186704 OTTHUMG00000155661 NG_046686 PGOHUM00000250953 +HGNC:42360 DTX2P1-UPK3BP1-PMS2P11 DTX2P1-UPK3BP1-PMS2P11 readthrough, transcribed pseudogene other readthrough Approved 7q11.23 07q11.23 DTX2P1-UPK3BP1-PMS2P11 readthrough (non-protein coding) 2011-07-06 2016-02-03 2016-02-03 441263 ENSG00000265479 OTTHUMG00000179528 uc011kgn.2 U38980 NR_023383 +HGNC:24457 DTX3 deltex E3 ubiquitin ligase 3 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "FLJ34766|RNF154" "deltex 3 homolog (Drosophila)|deltex homolog 3 (Drosophila)" Ring finger proteins 58 2004-02-23 2016-06-10 2016-10-05 196403 ENSG00000178498 OTTHUMG00000170189 uc031zdt.2 AK094385 NM_178502 "CCDS41800|CCDS66410" Q8N9I9 12670957 MGI:2135752 RGD:1566181 DTX3 613142 +HGNC:30323 DTX3L deltex E3 ubiquitin ligase 3L protein-coding gene gene with protein product Approved 3q21.1 03q21.1 BBAP rhysin 2 deltex 3-like (Drosophila) Ring finger proteins 58 2004-12-03 2016-06-10 2016-06-10 151636 ENSG00000163840 OTTHUMG00000159524 uc003efk.4 NM_138287 CCDS3015 Q8TDB6 "12670957|22411408" MGI:2656973 RGD:1565144 DTX3L 613143 +HGNC:29151 DTX4 deltex E3 ubiquitin ligase 4 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "KIAA0937|RNF155" deltex homolog 4 (Drosophila) Ring finger proteins 58 2004-02-23 2016-06-10 2016-10-05 23220 ENSG00000110042 OTTHUMG00000167336 uc001nns.3 AB023154 XM_166213 "CCDS44612|CCDS76408" Q9Y2E6 "10231032|22388039" MGI:2672905 RGD:1311767 DTX4 616110 +HGNC:3061 DTYMK deoxythymidylate kinase protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "CDC8|TYMK|TMPK" "dTMP kinase|thymidylate (dTMP) kinase" deoxythymidylate kinase (thymidylate kinase) 1991-09-12 2015-11-05 2016-10-05 1841 ENSG00000168393 OTTHUMG00000133409 uc002wbz.3 X54729 NM_012145 CCDS2552 P23919 "2017365|8024690" MGI:108396 RGD:1309614 DTYMK 188345 2.7.4.9 +HGNC:48569 DUBR DPPA2 upstream binding RNA non-coding RNA RNA, long non-coding Approved 3q13.12 03q13.12 LINC00883 long intergenic non-protein coding RNA 883 2013-05-17 2015-09-10 2015-09-10 2015-09-10 344595 ENSG00000243701 OTTHUMG00000159173 NR_028301 "24886442|25686699" MGI:1915440 616619 +HGNC:3062 DUOX1 dual oxidase 1 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "NOXEF1|THOX1|LNOX1" "NADPH thyroid oxidase 1|flavoprotein NADPH oxidase|nicotinamide adenine dinucleotide phosphate oxidase" EF-hand domain containing 863 2000-05-30 2016-01-15 53905 ENSG00000137857 OTTHUMG00000171987 uc001zus.3 AF213465 NM_017434 CCDS32221 Q9NRD9 10806195 MGI:2139422 RGD:628760 DUOX1 606758 +HGNC:13273 DUOX2 dual oxidase 2 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "P138-TOX|P138(TOX)|THOX2|LNOX2" "dual oxidase-like domains 2|nicotinamide adenine dinucleotide phosphate oxidase|flavoprotein NADPH oxidase|NADPH thyroid oxidase 2|NADH/NADPH thyroid oxidase p138-tox|NADPH oxidase/peroxidase DUOX2" EF-hand domain containing 863 2000-11-09 2016-10-05 50506 ENSG00000140279 OTTHUMG00000131355 uc010bea.4 AF181972 NM_014080 CCDS10117 Q9NRD8 "10601291|10806195" MGI:3036280 RGD:628761 DUOX2 606759 121233 +HGNC:26507 DUOXA1 dual oxidase maturation factor 1 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "FLJ32334|NUMBIP|NIP|mol" 2006-05-16 2006-07-25 2006-01-23 2014-11-18 90527 ENSG00000140254 OTTHUMG00000131352 uc001zuq.3 BC029819 NM_144565 "CCDS10119|CCDS61619|CCDS61620|CCDS61621" Q1HG43 16651268 MGI:2384861 RGD:1306601 DUOXA1 612771 +HGNC:32698 DUOXA2 dual oxidase maturation factor 2 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 2006-05-16 2006-07-25 2014-11-19 405753 ENSG00000140274 OTTHUMG00000131354 uc001zuo.4 BX537581 NM_207581 CCDS10118 Q1HG44 16651268 MGI:1914061 RGD:1560628 DUOXA2 612772 168179 +HGNC:23481 DUPD1 dual specificity phosphatase and pro isomerase domain containing 1 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 DUSP27 Atypical dual specificity phosphatases 896 2003-11-19 2016-10-05 338599 ENSG00000188716 OTTHUMG00000018512 uc001jwq.1 XM_291741 CCDS31223 Q68J44 MGI:3647127 RGD:1310229 DUPD1 +HGNC:3063 DURS1 Duane retraction syndrome 1 phenotype phenotype only Approved 8q13 08q13 Duane's retraction syndrome 1 1999-07-14 2007-10-04 2007-10-04 10674 7849713 126800 +HGNC:30086 DUS1L dihydrouridine synthase 1 like protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "PP3111|DUS1" dihydrouridine synthase 1-like (S. cerevisiae) 2005-05-05 2016-02-15 2016-02-15 64118 ENSG00000169718 OTTHUMG00000178525 uc002kdr.5 NM_022156 CCDS32775 Q6P1R4 12477932 MGI:1915980 RGD:708389 DUS1L +HGNC:26014 DUS2 dihydrouridine synthase 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ20399|SMM1" "SMM1 homolog (S. cerevisiae)|tRNA-dihydrouridine(20) synthase (NAD(P)(+))" DUS2L "dihydrouridine synthase 2-like (SMM1, S. cerevisiae)|dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)|dihydrouridine synthase 2-like" 2005-05-05 2013-07-23 2013-07-23 2016-02-15 54920 ENSG00000167264 OTTHUMG00000137538 NM_017803 "CCDS10859|CCDS61970" Q9NX74 "15994936|22741570" MGI:1913619 RGD:1305612 609707 1.3.1.91 +HGNC:26920 DUS3L dihydrouridine synthase 3 like protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "DUS3|FLJ13896" dihydrouridine synthase 3-like (S. cerevisiae) 2005-05-05 2016-02-15 2016-02-15 56931 ENSG00000141994 OTTHUMG00000162311 uc002mdc.4 NM_020175 "CCDS32880|CCDS54202" Q96G46 12477932 MGI:2147092 RGD:1563228 DUS3L +HGNC:21517 DUS4L dihydrouridine synthase 4 like protein-coding gene gene with protein product Approved 7q22.3 07q22.3 "PP35|DUS4" protein similar to E.coli yhdg and R. capsulatus nifR3 dihydrouridine synthase 4-like (S. cerevisiae) 2005-05-05 2016-02-03 2016-02-15 11062 ENSG00000105865 OTTHUMG00000154763 uc003veh.5 U62767 NM_181581 CCDS5745 O95620 MGI:1919166 RGD:1311445 DUS4L +HGNC:3064 DUSP1 dual specificity phosphatase 1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "HVH1|CL100|MKP-1" PTPN10 MAP kinase phosphatases 895 1993-03-03 2015-09-11 1843 ENSG00000120129 OTTHUMG00000130523 uc003mbv.3 X68277 NM_004417 CCDS4380 P28562 "1406996|7806236" MGI:105120 RGD:620897 DUSP1 600714 +HGNC:3068 DUSP2 dual specificity phosphatase 2 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 PAC-1 MAP kinase phosphatases 895 1994-12-14 2016-10-05 1844 ENSG00000158050 OTTHUMG00000130456 uc002svk.5 L11329 NM_004418 CCDS2016 Q05923 "7806236|7590752|12673251" MGI:101911 RGD:1305804 DUSP2 603068 +HGNC:3069 DUSP3 dual specificity phosphatase 3 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 VHR vaccinia virus phosphatase VH1-related Atypical dual specificity phosphatases 896 1994-05-19 2008-02-04 2016-10-05 1845 ENSG00000108861 OTTHUMG00000180889 uc002ied.5 BC035701 NM_004090 CCDS11469 P51452 7829094 MGI:1919599 RGD:1560049 DUSP3 600183 +HGNC:3070 DUSP4 dual specificity phosphatase 4 protein-coding gene gene with protein product Approved 8p12 08p12 "HVH2|MKP-2|TYP" "VH1 homologous phosphatase 2|MAP kinase phosphatase 2" MAP kinase phosphatases 895 1994-12-14 2016-10-05 1846 ENSG00000120875 OTTHUMG00000133395 uc003xhm.4 U21108 NM_001394 "CCDS6072|CCDS6073" Q13115 "7535768|9205128" MGI:2442191 RGD:620625 DUSP4 602747 +HGNC:3071 DUSP5 dual specificity phosphatase 5 protein-coding gene gene with protein product Approved 10q25.2 10q25.2 HVH3 MAP kinase phosphatases 895 1994-12-14 2016-10-05 1847 ENSG00000138166 OTTHUMG00000019040 uc001kzd.4 U16996 NM_004419 CCDS7566 Q16690 7806236 MGI:2685183 RGD:620854 DUSP5 603069 +HGNC:32020 DUSP5P1 dual specificity phosphatase 5 pseudogene 1 pseudogene pseudogene Approved 1q42.13 01q42.13 FLJ34941 DUSP5P dual specificity phosphatase 5 pseudogene 2005-06-30 2012-11-07 2012-11-07 2014-11-19 574029 ENSG00000183929 OTTHUMG00000037916 AK092260 NR_002834 PGOHUM00000245243 +HGNC:44482 DUSP5P2 dual specificity phosphatase 5 pseudogene 2 pseudogene pseudogene Approved 3p25.3 03p25.3 2012-11-07 2012-11-07 643459 ENSG00000235338 OTTHUMG00000155065 NG_022237 PGOHUM00000237929 +HGNC:3072 DUSP6 dual specificity phosphatase 6 protein-coding gene gene with protein product Approved 12q21.33 12q21.33 "MKP-3|PYST1" MAP kinase phosphatases 895 1997-03-19 2016-01-15 1848 ENSG00000139318 OTTHUMG00000169912 uc001tay.5 BC037236 "NM_001946|NM_022652" "CCDS9033|CCDS9034" Q16828 "8626780|9205128" MGI:1914853 RGD:70978 DUSP6 602748 353744 +HGNC:3073 DUSP7 dual specificity phosphatase 7 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "MKP-X|PYST2" MAP kinase phosphatases 895 1997-03-19 2016-10-05 1849 ENSG00000164086 OTTHUMG00000157819 uc003dct.4 X93921 NM_001947 CCDS33766 Q16829 "8626780|9205128" MGI:2387100 RGD:735026 DUSP7 602749 +HGNC:3074 DUSP8 dual specificity phosphatase 8 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "HVH-5|HB5|FLJ42958" "serine/threonine specific protein phosphatase|H1 phosphatase, vaccinia virus homolog" C11orf81 chromosome 11 open reading frame 81 MAP kinase phosphatases 895 1997-05-09 2015-09-11 1850 ENSG00000184545 OTTHUMG00000133348 uc001lts.3 NM_004420 CCDS7724 Q13202 "7561881|9192849" MGI:106626 RGD:1306425 DUSP8 602038 +HGNC:3075 DUSP8P1 dual specificity phosphatase 8 pseudogene 1 pseudogene pseudogene Approved 10q11.22 10q11.22 DUSP8P dual specificity phosphatase 8 pseudogene 1997-05-09 2013-01-07 2013-01-07 2015-02-02 728813 NG_022176 9192849 PGOHUM00000238780 +HGNC:45001 DUSP8P2 dual specificity phosphatase 8 pseudogene 2 pseudogene pseudogene Approved 10q11.22 10q11.22 2013-01-07 2015-08-14 728725 OTTHUMG00000018099 NG_022145 PGOHUM00000238464 +HGNC:3077 DUSP8P3 dual specificity phosphatase 8 pseudogene 3 pseudogene pseudogene Approved 10q11.22 10q11.22 HVH4 DUSPP dual specificity phosphatase pseudogene 1994-12-19 2013-01-07 2013-01-07 2015-08-14 441554 ENSG00000215097 OTTHUMG00000018099 NG_022173 7806236 PGOHUM00000289844 +HGNC:45002 DUSP8P4 dual specificity phosphatase 8 pseudogene 4 pseudogene pseudogene Approved 10q11.22 10q11.22 2013-01-07 2015-08-06 728657 ENSG00000215065 OTTHUMG00000018111 NG_022174 PGOHUM00000290149 +HGNC:45003 DUSP8P5 dual specificity phosphatase 8 pseudogene 5 pseudogene pseudogene Approved 10q22.2 10q22.2 2013-01-07 2016-02-12 106903081 ENSG00000235316 OTTHUMG00000018485 NG_046333 PGOHUM00000290205 +HGNC:3076 DUSP9 dual specificity phosphatase 9 protein-coding gene gene with protein product Approved Xq28 Xq28 "MKP-4|MKP4" map kinase phosphatase 4 MAP kinase phosphatases 895 1998-06-25 2015-09-11 1852 ENSG00000130829 OTTHUMG00000024211 uc004fhx.5 Y08302 NM_001395 CCDS14724 Q99956 "9030581|9286695" MGI:2387107 RGD:1565535 DUSP9 300134 +HGNC:3065 DUSP10 dual specificity phosphatase 10 protein-coding gene gene with protein product Approved 1q41 01q41 "MKP-5|MKP5" MAP kinase phosphatases 895 1999-11-26 2015-09-11 11221 ENSG00000143507 OTTHUMG00000037269 uc001hmy.3 AB026436 NM_007207 CCDS1528 Q9Y6W6 "10391943|10597297" MGI:1927070 RGD:1310844 DUSP10 608867 +HGNC:3066 DUSP11 dual specificity phosphatase 11 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 PIR1 RNA/RNP complex 1-interacting dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) Atypical dual specificity phosphatases 896 1998-11-06 2015-11-05 2015-11-05 8446 ENSG00000144048 OTTHUMG00000129816 uc002sjp.4 AF023917 XR_244962 CCDS1928 O75319 9685386 MGI:1919352 RGD:9168966 DUSP11 603092 +HGNC:3067 DUSP12 dual specificity phosphatase 12 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "YVH1|DUSP1" "serine/threonine specific protein phosphatase|YVH1 protein-tyrosine phosphatase (S. cerevisiae) ortholog" Atypical dual specificity phosphatases 896 2000-01-31 2016-10-05 11266 ENSG00000081721 OTTHUMG00000034540 uc001gbo.4 AF119226 NM_007240 CCDS1234 Q9UNI6 10446167 MGI:1890614 RGD:68375 DUSP12 604835 +HGNC:49059 DUSP12P1 dual specificity phosphatase 12 pseudogene 1 pseudogene pseudogene Approved 3q12.1 03q12.1 2013-08-19 2015-09-21 100420473 ENSG00000277000 OTTHUMG00000187563 NG_025604 PGOHUM00000299104 +HGNC:19681 DUSP13 dual specificity phosphatase 13 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "BEDP|TMDP|FLJ32450|DUSP13A|DUSP13B" Atypical dual specificity phosphatases 896 2002-11-11 2016-10-05 51207 ENSG00000079393 OTTHUMG00000018516 uc057ufm.1 AB027004 NM_001320842 "CCDS7346|CCDS31224|CCDS53542" "Q6B8I1|Q9UII6" 10585869 MGI:1351599 RGD:1359712 DUSP13 613191 +HGNC:17007 DUSP14 dual specificity phosphatase 14 protein-coding gene gene with protein product Approved 17q12 17q12 "MKP-L|MKP6" MKP-1 like protein tyrosine phosphatase Atypical dual specificity phosphatases 896 2002-01-09 2015-02-02 11072 ENSG00000276023 OTTHUMG00000188472 uc032gia.2 AF038844 NM_007026 CCDS11320 O95147 11123293 MGI:1927168 RGD:1307415 DUSP14 606618 +HGNC:16236 DUSP15 dual specificity phosphatase 15 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "bA243J16.6|VHY|FLJ20645|bA243J16.5" C20orf57 "dual specificity phosphatase-like 15|chromosome 20 open reading frame 57" Atypical dual specificity phosphatases 896 2001-07-17 2005-03-09 2015-10-19 128853 ENSG00000149599 OTTHUMG00000032182 uc002wwx.2 NM_080611 "CCDS13193|CCDS42862|CCDS82606|CCDS82607" Q9H1R2 15138252 MGI:1934928 RGD:1305990 DUSP15 616776 +HGNC:17909 DUSP16 dual specificity phosphatase 16 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "MKP-7|KIAA1700|MKP7" MAPK phosphatase-7 MAP kinase phosphatases 895 2002-08-20 2016-10-05 80824 ENSG00000111266 OTTHUMG00000168582 uc001rao.3 AB052156 NM_030640 CCDS8650 Q9BY84 "11359773|11489891|15888437" MGI:1917936 RGD:1310721 DUSP16 607175 +HGNC:18484 DUSP18 dual specificity phosphatase 18 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 DUSP20 Atypical dual specificity phosphatases 896 2003-02-14 2015-08-25 150290 ENSG00000167065 OTTHUMG00000151115 uc021wnv.2 AF461689 XM_011529920 "CCDS13883|CCDS77667" Q8NEJ0 12408986 MGI:1922469 RGD:1306929 DUSP18 611446 +HGNC:18894 DUSP19 dual specificity phosphatase 19 protein-coding gene gene with protein product Approved 2q32.1 02q32.1 "SKRP1|DUSP17" Atypical dual specificity phosphatases 896 2002-11-11 2014-11-18 142679 ENSG00000162999 OTTHUMG00000132622 uc002upd.4 AB038770 NM_001321519 "CCDS2289|CCDS46469" Q8WTR2 MGI:1915332 RGD:1307457 DUSP19 611437 +HGNC:20476 DUSP21 dual specificity phosphatase 21 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 Atypical dual specificity phosphatases 896 2003-02-17 2016-10-05 63904 ENSG00000189037 OTTHUMG00000021401 uc004dgd.4 AF143321 NM_022076 CCDS14264 Q9H596 12408986 MGI:1920797 RGD:1560427 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DUSP21 DUSP21 300678 +HGNC:16077 DUSP22 dual specificity phosphatase 22 protein-coding gene gene with protein product Approved 6p25.3 06p25.3 "MKPX|JSP1|JKAP|VHX" Atypical dual specificity phosphatases 896 2003-05-19 2015-09-11 56940 ENSG00000112679 OTTHUMG00000014113 uc003msy.3 AF165519 NM_020185 "CCDS4468|CCDS69035" Q9NRW4 "9205128|11717427" MGI:1915926 RGD:1307146 DUSP22 616778 +HGNC:21480 DUSP23 dual specificity phosphatase 23 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "FLJ20442|DUSP25" Atypical dual specificity phosphatases 896 2004-06-10 2016-10-05 54935 ENSG00000158716 OTTHUMG00000022795 uc001fua.2 NM_017823 CCDS1187 Q9BVJ7 15147733 MGI:1915690 RGD:1309202 DUSP23 +HGNC:28161 DUSP26 dual specificity phosphatase 26 (putative) protein-coding gene gene with protein product Approved 8p12 08p12 "MGC1136|DUSP24" Atypical dual specificity phosphatases 896 2005-03-09 2015-09-11 78986 ENSG00000133878 OTTHUMG00000163961 uc003xjp.4 AY902194 NM_024025 CCDS6092 Q9BV47 MGI:1914209 RGD:1310090 DUSP26 +HGNC:25034 DUSP27 dual specificity phosphatase 27 (putative) protein-coding gene gene with protein product Approved 1q24.1 01q24.1 2005-07-29 2016-07-18 2016-07-18 92235 ENSG00000198842 OTTHUMG00000034434 uc057nat.1 AF119045 NM_001080426 CCDS30932 Q5VZP5 MGI:2685055 RGD:1560598 DUSP27 +HGNC:33237 DUSP28 dual specificity phosphatase 28 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "VHP|DUSP26" Atypical dual specificity phosphatases 896 2007-01-04 2016-10-05 285193 ENSG00000188542 OTTHUMG00000152310 uc002vzg.3 BC036198 NM_001033575 CCDS33418 Q4G0W2 MGI:1914696 RGD:1595220 DUSP28 +HGNC:3078 DUT deoxyuridine triphosphatase protein-coding gene gene with protein product Approved 15q21.1 15q21.1 dUTPase dUTP diphosphatase dUTP pyrophosphatase 1995-09-28 2007-12-17 2015-08-25 1854 ENSG00000128951 OTTHUMG00000172155 uc001zww.4 M89913 XM_017021988 "CCDS32231|CCDS45255|CCDS45256|CCDS81879" P33316 "1325640|9070952" MGI:1346051 RGD:620849 DUT 601266 3.6.1.23 +HGNC:31956 DUTP1 deoxyuridine triphosphatase pseudogene 1 pseudogene pseudogene Approved 3q21.2 03q21.2 DUTL "dUTP pyrophosphatase-like|deoxyuridine triphosphatase-like" 2005-04-11 2011-02-09 2011-02-09 2014-11-19 548637 ENSG00000229048 OTTHUMG00000159443 AF090907 NG_028739 PGOHUM00000238159 +HGNC:39515 DUTP2 deoxyuridine triphosphatase pseudogene 2 pseudogene pseudogene Approved 8q24.13 08q24.13 2011-02-11 2014-11-18 100873909 ENSG00000254388 OTTHUMG00000165091 NG_032312 PGOHUM00000249790 +HGNC:39516 DUTP3 deoxyuridine triphosphatase pseudogene 3 pseudogene pseudogene Approved 7q35 07q35 2011-02-11 2014-11-19 100861485 ENSG00000226857 OTTHUMG00000152746 NG_032032 PGOHUM00000233635 +HGNC:39517 DUTP4 deoxyuridine triphosphatase pseudogene 4 pseudogene pseudogene Approved Xq28 Xq28 2011-02-11 2014-11-19 100873910 ENSG00000229829 OTTHUMG00000022632 NG_032313 PGOHUM00000242075 +HGNC:39518 DUTP5 deoxyuridine triphosphatase pseudogene 5 pseudogene pseudogene Approved 6q14.3 06q14.3 2011-02-11 2012-10-16 100873911 ENSG00000216439 OTTHUMG00000015136 NG_032314 PGOHUM00000262006 +HGNC:39519 DUTP6 deoxyuridine triphosphatase pseudogene 6 pseudogene pseudogene Approved 1q24.1 01q24.1 2011-02-11 2014-11-18 100873912 ENSG00000225171 OTTHUMG00000034322 NG_032315 PGOHUM00000245069 +HGNC:39520 DUTP7 deoxyuridine triphosphatase pseudogene 7 pseudogene pseudogene Approved 4q12 04q12 2011-02-11 2014-11-18 100873913 ENSG00000250473 OTTHUMG00000160621 NG_032316 PGOHUM00000262001 +HGNC:39521 DUTP8 deoxyuridine triphosphatase pseudogene 8 pseudogene pseudogene Approved 4q23 04q23 2011-02-11 2014-11-18 100873914 ENSG00000214904 OTTHUMG00000160959 NG_032317 PGOHUM00000246007 +HGNC:3079 DUX1 double homeobox 1 other unknown Approved reserved reserved double homeobox, 1 1999-12-01 2010-07-20 2011-02-17 26584 AJ001481 NM_012146 O43812 "9736770|11245978" 611441 +HGNC:3081 DUX3 double homeobox 3 other unknown Approved reserved reserved 1999-12-01 2010-07-20 2010-07-20 26582 AF133130 NM_012148 Q96PT4 11245978 611443 +HGNC:50800 DUX4 double homeobox 4 protein-coding gene gene with protein product Approved 4q35.2 04q35.2 2014-06-20 2015-08-27 100288687 ENSG00000260596 OTTHUMG00000175568 NM_001306068 CCDS77990 Q9UBX2 20724583 DUX4 606009 +HGNC:3082 DUX4L1 double homeobox 4 like 1 pseudogene pseudogene Approved 4q35.2 04q35.2 DUX4 double homeobox 4 PRD class homeoboxes and pseudogenes 521 1999-12-01 2014-06-20 2014-06-20 2015-08-04 22947 ENSG00000280757 OTTHUMG00000161317 uc032uhw.2 D38024 NM_033178 9089 121239 PGOHUM00000306581 +HGNC:37267 DUX4L2 double homeobox 4 like 2 pseudogene pseudogene Approved 4q35.2 04q35.2 PRD class homeoboxes and pseudogenes 521 2010-07-19 2015-08-04 728410 ENSG00000280457 OTTHUMG00000161316 NM_001127386 P0CJ85 DUX4L2 9091 PGOHUM00000306583 +HGNC:38688 DUX4L3 double homeobox 4 like 3 pseudogene pseudogene Approved 4q35.2 04q35.2 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-08-04 653548 ENSG00000281627 OTTHUMG00000161319 NG_034177 P0CJ86 DUX4L3 9090 PGOHUM00000306582 +HGNC:38686 DUX4L4 double homeobox 4 like 4 pseudogene pseudogene Approved 4q35.2 04q35.2 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-03-11 441056 ENSG00000258834 OTTHUMG00000161318 NM_001177376 P0CJ87 DUX4L4 9088 PGOHUM00000306580 +HGNC:38689 DUX4L5 double homeobox 4 like 5 pseudogene pseudogene Approved 4q35.2 04q35.2 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-08-04 653545 ENSG00000280799 OTTHUMG00000161315 NM_001127389 P0CJ88 9087 PGOHUM00000306579 +HGNC:37265 DUX4L6 double homeobox 4 like 6 pseudogene pseudogene Approved 4q35.2 04q35.2 PRD class homeoboxes and pseudogenes 521 2010-07-19 2015-08-04 653544 ENSG00000281058 OTTHUMG00000161313 NM_001127388 P0CJ89 9086 PGOHUM00000306578 +HGNC:37266 DUX4L7 double homeobox 4 like 7 pseudogene pseudogene Approved 4q35.2 04q35.2 PRD class homeoboxes and pseudogenes 521 2010-07-19 2015-08-04 653543 ENSG00000281652 OTTHUMG00000161314 NM_001127387 P0CJ90 9085 PGOHUM00000306577 +HGNC:38670 DUX4L8 double homeobox 4 like 8 pseudogene pseudogene Approved 4q35.2 04q35.2 DUX2 "double homeobox 2|double homeobox, 2|double homeobox 4 like 8 (pseudogene)" PRD class homeoboxes and pseudogenes 521 2010-07-20 2014-06-23 2015-08-04 26583 ENSG00000281720 OTTHUMG00000161320 NG_034173 611442 PGOHUM00000300102 +HGNC:33855 DUX4L9 double homeobox 4 like 9 pseudogene pseudogene Approved 4q35.2 04q35.2 double homeobox 4 like 9 (pseudogene) PRD class homeoboxes and pseudogenes 521 2010-07-19 2014-06-23 2015-03-10 100288711 ENSG00000224807 OTTHUMG00000161003 NG_027951 Q6RFH8 RGD:1311053 615581 PGOHUM00000306055 +HGNC:31354 DUX4L10 double homeobox 4 like 10 pseudogene pseudogene Approved 10q26.3 10q26.3 DUX10 PRD class homeoboxes and pseudogenes 521 2010-07-19 2015-02-02 440013 ENSG00000278664 OTTHUMG00000019332 AY044051 NG_012775 9092 PGOHUM00000290029 +HGNC:38687 DUX4L11 double homeobox 4 like 11 pseudogene pseudogene Approved 10q26.3 10q26.3 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-02-02 399839 ENSG00000278761 OTTHUMG00000170701 NG_012779 9093 PGOHUM00000290030 +HGNC:38671 DUX4L12 double homeobox 4 like 12 pseudogene pseudogene Approved 10q26.3 10q26.3 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-02-02 440014 ENSG00000278790 OTTHUMG00000185266 NG_012776 9094 PGOHUM00000290031 +HGNC:38672 DUX4L13 double homeobox 4 like 13 pseudogene pseudogene Approved 10q26.3 10q26.3 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-02-02 100289581 ENSG00000276046 OTTHUMG00000019335 NG_012773 9095 PGOHUM00000290032 +HGNC:38673 DUX4L14 double homeobox 4 like 14 pseudogene pseudogene Approved 10q26.3 10q26.3 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-02-02 728022 ENSG00000276904 OTTHUMG00000019334 NG_012778 9096 PGOHUM00000290033 +HGNC:38674 DUX4L15 double homeobox 4 like 15 pseudogene pseudogene Approved 10q26.3 10q26.3 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-02-02 440017 ENSG00000278641 OTTHUMG00000019336 NG_012777 9097 PGOHUM00000290034 +HGNC:37719 DUX4L16 double homeobox 4 like 16 pseudogene pseudogene Approved Yq11.21 Yq11.21 DUXY1 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-03-10 728169 ENSG00000258567 OTTHUMG00000170710 NG_021937 15653831 9527 PGOHUM00000306228 +HGNC:37717 DUX4L17 double homeobox 4 like 17 pseudogene pseudogene Approved Yq11.21 Yq11.21 DUXY3 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-03-10 643001 ENSG00000259154 OTTHUMG00000170711 NG_028177 15653831 9528 PGOHUM00000305642 +HGNC:37716 DUX4L18 double homeobox 4 like 18 pseudogene pseudogene Approved Yq11.21 Yq11.21 DUXY2 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-03-10 100132421 ENSG00000259029 OTTHUMG00000170712 NG_029032 15653831 9529 PGOHUM00000305643 +HGNC:37718 DUX4L19 double homeobox 4 like 19 pseudogene pseudogene Approved Yq11.21 Yq11.21 DUXY4 PRD class homeoboxes and pseudogenes 521 2010-07-20 2015-03-10 643034 ENSG00000258991 OTTHUMG00000170713 NG_029033 15653831 9530 PGOHUM00000305644 +HGNC:50801 DUX4L20 double homeobox 4 like 20 pseudogene pseudogene Approved 10q26.3 10q26.3 2014-06-23 2015-03-11 102723538 ENSG00000276164 OTTHUMG00000189297 NG_034165 PGOHUM00000305855 +HGNC:50802 DUX4L21 double homeobox 4 like 21 pseudogene pseudogene Approved 10q26.3 10q26.3 2014-06-23 2015-03-11 102723518 ENSG00000275610 OTTHUMG00000189296 NG_034166 PGOHUM00000305854 +HGNC:50803 DUX4L22 double homeobox 4 like 22 pseudogene pseudogene Approved 10q26.3 10q26.3 2014-06-23 2015-03-11 102723495 ENSG00000277274 OTTHUMG00000189295 NG_034167 PGOHUM00000305853 +HGNC:50804 DUX4L23 double homeobox 4 like 23 pseudogene pseudogene Approved 10q26.3 10q26.3 2014-06-23 2015-03-11 102723472 ENSG00000276964 OTTHUMG00000189294 NG_034168 PGOHUM00000305852 +HGNC:50805 DUX4L24 double homeobox 4 like 24 pseudogene pseudogene Approved 10q26.3 10q26.3 2014-06-23 2015-03-11 102723449 ENSG00000274599 OTTHUMG00000189293 NG_034169 PGOHUM00000305851 +HGNC:50806 DUX4L25 double homeobox 4 like 25 pseudogene pseudogene Approved 10q26.3 10q26.3 2014-06-23 2015-03-11 102723423 ENSG00000280337 OTTHUMG00000189292 NG_034170 PGOHUM00000305850 +HGNC:50807 DUX4L26 double homeobox 4 like 26 pseudogene pseudogene Approved 3p12.3 03p12.3 2014-06-23 2015-03-11 100996350 ENSG00000236138 OTTHUMG00000158962 NG_034171 PGOHUM00000306043 +HGNC:50808 DUX4L27 double homeobox 4 like 27 pseudogene pseudogene Approved 12p11.1 12p11.1 2014-06-23 2015-03-10 100131369 ENSG00000258794 OTTHUMG00000170996 NG_021684 PGOHUM00000291293 +HGNC:51605 DUX4L28 double homeobox 4 like 28 pseudogene pseudogene Approved 10q26.3 10q26.3 2015-03-16 2015-03-16 106481728 ENSG00000279626 OTTHUMG00000189291 NG_043443 PGOHUM00000290324 +HGNC:51606 DUX4L29 double homeobox 4 like 29 pseudogene pseudogene Approved 10q26.3 10q26.3 2015-03-16 2015-03-16 106481970 ENSG00000237635 OTTHUMG00000019339 NG_043333 PGOHUM00000290326 +HGNC:51770 DUX4L31 double homeobox 4 like 31 (pseudogene) pseudogene pseudogene Approved Yp11.2 Yp11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 100887073 ENSG00000231411 OTTHUMG00000041619 NG_032747 PGOHUM00000305463 +HGNC:51771 DUX4L32 double homeobox 4 like 32 (pseudogene) pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-19 2016-01-06 2016-01-06 107075316 ENSG00000283069 OTTHUMG00000191528 NG_046375 PGOHUM00000297085 +HGNC:51789 DUX4L33 double homeobox 4 like 33 (pseudogene) pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-19 2016-01-06 2016-01-06 107080551 ENSG00000282894 OTTHUMG00000191530 NG_046379 +HGNC:51772 DUX4L34 double homeobox 4 like 34 (pseudogene) pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-19 2015-05-19 2016-01-06 2016-01-06 105379479 ENSG00000282935 OTTHUMG00000191523 PGOHUM00000305983 +HGNC:51773 DUX4L35 double homeobox 4 like 35 (pseudogene) pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-19 2015-05-19 2016-01-06 2016-01-06 106632270 ENSG00000282911 OTTHUMG00000191527 NG_042876 PGOHUM00000296945 +HGNC:51774 DUX4L36 double homeobox 4 like 36 (pseudogene) pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107080642 NG_046557 PGOHUM00000305988 +HGNC:51775 DUX4L37 double homeobox 4 like 37 (pseudogene) pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107080108 ENSG00000283020 OTTHUMG00000191535 NG_046377 PGOHUM00000306554 +HGNC:51776 DUX4L38 double homeobox 4 like 38 (pseudogene) pseudogene pseudogene Approved 20q11.21 20q11.21 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107080648 NG_046560 PGOHUM00000296962 +HGNC:51777 DUX4L39 double homeobox 4 like 39 (pseudogene) pseudogene pseudogene Approved 20q11.21 20q11.21 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107080645 NG_046558 PGOHUM00000305986 +HGNC:51778 DUX4L40 double homeobox 4 like 40 (pseudogene) pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107080649 NG_046562 PGOHUM00000306011 +HGNC:51779 DUX4L41 double homeobox 4 like 41 (pseudogene) pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107080650 NG_046563 PGOHUM00000306012 +HGNC:51780 DUX4L42 double homeobox 4 like 42 (pseudogene) pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 106660607 NG_042896 PGOHUM00000306004 +HGNC:51781 DUX4L43 double homeobox 4 like 43 (pseudogene) pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 106660617 NG_044940 PGOHUM00000297401 +HGNC:51782 DUX4L44 double homeobox 4 like 44 (pseudogene) pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107080651 NG_046564 PGOHUM00000297409 +HGNC:51783 DUX4L45 double homeobox 4 like 45 (pseudogene) pseudogene pseudogene Approved 16p11.2 16p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 100887074 ENSG00000261440 OTTHUMG00000176375 NG_032744 PGOHUM00000306536 +HGNC:51784 DUX4L46 double homeobox 4 like 46 (pseudogene) pseudogene pseudogene Approved 16p11.2 16p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 106480349 ENSG00000259987 OTTHUMG00000176377 NG_044654 PGOHUM00000305914 +HGNC:51785 DUX4L47 double homeobox 4 like 47 (pseudogene) pseudogene pseudogene Approved 16p11.2 16p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 106481738 ENSG00000260207 OTTHUMG00000176378 NG_043519 PGOHUM00000293825 +HGNC:51786 DUX4L48 double homeobox 4 like 48 (pseudogene) pseudogene pseudogene Approved 14p11.2 14p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107105251 NG_046569 PGOHUM00000305891 +HGNC:51787 DUX4L49 double homeobox 4 like 49 (pseudogene) pseudogene pseudogene Approved 14p11.2 14p11.2 2015-05-19 2015-05-19 2016-01-06 2016-01-06 107105252 NG_046570 PGOHUM00000305892 +HGNC:51788 DUX4L50 double homeobox 4 like 50 (pseudogene) pseudogene pseudogene Approved 9q13 09q13 2015-05-19 2015-05-19 2016-01-06 2016-01-06 106480350 ENSG00000232815 OTTHUMG00000058675 NG_044663 PGOHUM00000303875 +HGNC:51810 DUX4L51 double homeobox 4 like 51 (pseudogene) pseudogene pseudogene Approved 5p13.3 05p13.3 2015-06-11 2016-01-06 2016-01-06 106481740 ENSG00000250482 OTTHUMG00000161975 NG_045485 PGOHUM00000300910 +HGNC:51811 DUX4L52 double homeobox 4 like 52 (pseudogene) pseudogene pseudogene Approved 12q14.1 12q14.1 2015-06-11 2016-01-06 2016-01-06 106480354 ENSG00000258336 OTTHUMG00000169973 NG_044691 PGOHUM00000291373 +HGNC:3083 DUX5 double homeobox 5 other unknown Approved reserved reserved 1999-12-01 2010-07-20 2010-07-20 26581 AF133131 NM_012149 Q96PT3 11245978 611444 +HGNC:32179 DUXA double homeobox A protein-coding gene gene with protein product Approved 19q13.43 19q13.43 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-08-27 503835 ENSG00000258873 OTTHUMG00000170714 uc002qoa.2 NM_001012729 CCDS33126 A6NLW8 DUXA 611168 8530 +HGNC:32180 DUXAP1 double homeobox A pseudogene 1 pseudogene pseudogene Approved 2p11.2 02p11.2 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503630 ENSG00000259056 OTTHUMG00000170724 NG_004841 8364 PGOHUM00000298491 +HGNC:32181 DUXAP2 double homeobox A pseudogene 2 pseudogene pseudogene Approved 8q22.3 08q22.3 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503631 ENSG00000254063 OTTHUMG00000164830 NG_004842 8365 PGOHUM00000303332 +HGNC:32182 DUXAP3 double homeobox A pseudogene 3 pseudogene pseudogene Approved 10q11.21 10q11.21 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503632 ENSG00000270552 OTTHUMG00000184626 NR_002220 8366 PGOHUM00000289821 +HGNC:32183 DUXAP4 double homeobox A pseudogene 4 pseudogene pseudogene Approved 10q11.21 10q11.21 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503633 ENSG00000270258 OTTHUMG00000184653 NG_004843 8367 PGOHUM00000290134 +HGNC:32184 DUXAP5 double homeobox A pseudogene 5 pseudogene pseudogene Approved 11q23.3 11q23.3 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503634 ENSG00000255377 OTTHUMG00000166203 NG_004844 8368 PGOHUM00000290724 +HGNC:32185 DUXAP6 double homeobox A pseudogene 6 pseudogene pseudogene Approved 15q26.1 15q26.1 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503635 ENSG00000258726 OTTHUMG00000171701 NG_004845 8369 PGOHUM00000293360 +HGNC:32186 DUXAP7 double homeobox A pseudogene 7 pseudogene pseudogene Approved 20p11.23 20p11.23 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503636 ENSG00000232136 OTTHUMG00000031979 NG_004846 8370 PGOHUM00000296912 +HGNC:32187 DUXAP8 double homeobox A pseudogene 8 pseudogene pseudogene Approved 22q11.1 22q11.1 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503637 ENSG00000271672 OTTHUMG00000140194 uc002zks.5 NG_004840 8371 PGOHUM00000297600 +HGNC:32188 DUXAP9 double homeobox A pseudogene 9 pseudogene pseudogene Approved 14q11.2 14q11.2 FLJ39632 LINC01296 long intergenic non-protein coding RNA 1296 PRD class homeoboxes and pseudogenes 521 2005-08-08 2016-07-12 503638 ENSG00000225210 OTTHUMG00000188246 NG_004839 8372 PGOHUM00000292548 +HGNC:32189 DUXAP10 double homeobox A pseudogene 10 pseudogene pseudogene Approved 14q11.2 14q11.2 PRD class homeoboxes and pseudogenes 521 2005-08-08 2015-03-11 503639 OTTHUMG00000170430 NG_004838 8373 PGOHUM00000292272 +HGNC:51812 DUXAP11 double homeobox A pseudogene 11 pseudogene pseudogene Approved 16q21 16q21 2015-06-11 2015-06-11 106481741 ENSG00000270222 OTTHUMG00000184807 NG_043545 PGOHUM00000293885 +HGNC:51813 DUXAP12 double homeobox A pseudogene 12 pseudogene pseudogene Approved 14q24.2 14q24.2 2015-06-11 2015-06-11 100419081 NG_027290 PGOHUM00000292397 +HGNC:33345 DUXB double homeobox B other unknown Approved 16q23.1 16q23.1 PRD class homeoboxes and pseudogenes 521 2007-02-15 2015-06-11 100033411 ENSG00000282757 OTTHUMG00000191435 "17005330|17668377" 8580 +HGNC:3084 DVL1 dishevelled segment polarity protein 1 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "dishevelled 1 (homologous to Drosophila dsh)|dishevelled, dsh homolog 1 (Drosophila)" "Dishevelled segment polarity proteins|PDZ domain containing" "505|1220" 1996-03-12 2013-05-22 2016-10-05 1855 ENSG00000107404 OTTHUMG00000003069 uc002quu.4 AF006011 NM_004421 "CCDS22|CCDS81252" O14640 8817329 MGI:94941 RGD:620632 DVL1 601365 426034 +HGNC:3085 DVL1P1 dishevelled segment polarity protein 1 pseudogene 1 pseudogene pseudogene Approved 22q11.21 22q11.21 DVL-22 DVL1L1 "dishevelled 1-like 1 (homologous to Drosophila dsh)|dishevelled, dsh homolog 1 (Drosophila)-like 1|dishevelled, dsh homolog 1 (Drosophila) pseudogene 1" 1999-10-29 2013-03-15 2013-05-22 2016-10-05 8215 U46462 NG_009878 P54792 "8644734|10591208" 601225 +HGNC:3086 DVL2 dishevelled segment polarity protein 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "dishevelled 2 (homologous to Drosophila dsh)|dishevelled, dsh homolog 2 (Drosophila)" "Dishevelled segment polarity proteins|PDZ domain containing" "505|1220" 1996-03-12 2013-05-22 2015-09-11 1856 ENSG00000004975 OTTHUMG00000102155 uc002gez.2 BC014844 NM_004422 CCDS11091 O14641 8662242 MGI:106613 RGD:1309725 DVL2 602151 +HGNC:3087 DVL3 dishevelled segment polarity protein 3 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 KIAA0208 "dishevelled 3 (homologous to Drosophila dsh)|dishevelled, dsh homolog 3 (Drosophila)" "Dishevelled segment polarity proteins|PDZ domain containing" "505|1220" 1997-04-21 2013-05-22 2016-10-05 1857 ENSG00000161202 OTTHUMG00000156841 uc003fms.4 D86963 NM_004423 CCDS3253 Q92997 8817329 MGI:108100 RGD:1308834 DVL3 601368 456808 +HGNC:3088 DWS dandy-walker syndrome phenotype phenotype only Approved reserved reserved 1991-08-21 2007-06-16 1858 15338008 220200 +HGNC:2992 DXO decapping exoribonuclease protein-coding gene gene with protein product Approved 6p21.33 06p21.33 DOM3Z "DOM-3 (C. elegans) homolog Z|dom-3 homolog Z (C. elegans)" 1998-07-16 2013-09-11 2013-09-11 2016-10-05 1797 ENSG00000204348 OTTHUMG00000031272 AF059252 XM_006715005 CCDS4732 O77932 "9799600|23523372" MGI:1890444 RGD:1303267 605996 +HGNC:23460 DYDC1 DPY30 domain containing 1 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "bA36D19.5|DPY30D1" 2004-05-27 2016-10-05 143241 ENSG00000170788 OTTHUMG00000018609 uc001kbx.6 BC019250 NM_138812 CCDS7366 Q8WWB3 MGI:1916746 RGD:1588855 DYDC1 615154 +HGNC:23468 DYDC2 DPY30 domain containing 2 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "bA36D19.6|MGC16186" 2004-05-27 2014-11-19 84332 ENSG00000133665 OTTHUMG00000018610 uc001kbz.4 BC018606 NM_032372 "CCDS7367|CCDS58088" Q96IM9 12477932 MGI:1918450 RGD:1588866 DYDC2 +HGNC:21317 DYM dymeclin protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "FLJ20071|DMC|SMC" 2005-01-05 2015-08-25 54808 ENSG00000141627 OTTHUMG00000132659 uc002ldi.2 AK000078 NM_017653 CCDS11937 Q7RTS9 MGI:1918480 RGD:1309111 DYM 607461 121241 +HGNC:26808 DYNAP dynactin associated protein protein-coding gene gene with protein product Approved 18q21.2 18q21.2 FLJ39106 C18orf26 chromosome 18 open reading frame 26 2004-05-20 2012-10-24 2012-10-24 2014-11-19 284254 ENSG00000178690 OTTHUMG00000132709 uc002lfq.1 AK096425 NM_173629 "CCDS11957|CCDS77190" Q8N1N2 20978158 MGI:1922827 RGD:7550710 +HGNC:2961 DYNC1H1 dynein cytoplasmic 1 heavy chain 1 protein-coding gene gene with protein product Approved 14q32.31 14q32.31 "Dnchc1|HL-3|p22|DHC1|CMT2O" "DNECL|DNCL|DNCH1" dynein, cytoplasmic, heavy polypeptide 1 Dyneins, cytoplasmic 538 1995-11-15 2005-11-24 2016-03-02 2016-03-02 1778 ENSG00000197102 OTTHUMG00000171644 uc001yks.3 AB002323 NM_001376 CCDS9966 Q14204 "16260502|8666668" MGI:103147 RGD:2511 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ DYNC1H1 600112 284237 +HGNC:2963 DYNC1I1 dynein cytoplasmic 1 intermediate chain 1 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 DNCIC1 DNCI1 dynein, cytoplasmic, intermediate polypeptide 1 "WD repeat domain containing|Dyneins, cytoplasmic" "362|538" 1995-11-15 2005-11-24 2016-03-02 2016-03-02 1780 ENSG00000158560 OTTHUMG00000153983 uc003uob.4 AF063228 NM_004411 "CCDS5644|CCDS47645|CCDS47646|CCDS64718|CCDS64719" O14576 "10049579|16260502" MGI:107743 RGD:2512 DYNC1I1 603772 +HGNC:2964 DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 DIC74 DNCI2 dynein, cytoplasmic, intermediate polypeptide 2 "WD repeat domain containing|Dyneins, cytoplasmic" "362|538" 1995-11-15 2005-11-24 2016-03-02 2016-03-02 1781 ENSG00000077380 OTTHUMG00000154061 uc002uhb.3 AK055491 NM_001378 "CCDS46450|CCDS63054|CCDS63056|CCDS63057|CCDS82533" Q13409 "10049579|16260502" MGI:107750 RGD:620174 DYNC1I2 603331 +HGNC:45012 DYNC1I2P1 dynein cytoplasmic 1 intermediate chain 2 pseudogene 1 pseudogene pseudogene Approved 10q11.23 10q11.23 2013-01-07 2016-03-02 2016-03-02 728532 ENSG00000225137 OTTHUMG00000018224 NG_022178 PGOHUM00000238794 +HGNC:18745 DYNC1LI1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 DNCLI1 dynein, cytoplasmic, light intermediate polypeptide 1 Dyneins, cytoplasmic 538 2002-06-12 2005-11-25 2016-03-02 2016-10-05 51143 ENSG00000144635 OTTHUMG00000130750 uc003cfb.4 AF078849 NM_016141 CCDS2654 Q9Y6G9 16260502 MGI:2135610 RGD:71072 DYNC1LI1 615890 +HGNC:2966 DYNC1LI2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 DNCLI2 dynein, cytoplasmic, light intermediate polypeptide 2 Dyneins, cytoplasmic 538 1995-11-15 2005-11-25 2016-03-02 2016-03-02 1783 ENSG00000135720 OTTHUMG00000137523 uc002eqb.2 AF035812 NM_006141 "CCDS10818|CCDS67049" O43237 16260502 MGI:107738 RGD:621130 DYNC1LI2 611406 +HGNC:2962 DYNC2H1 dynein cytoplasmic 2 heavy chain 1 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "hdhc11|DHC2|DHC1b|DYH1B" DNCH2 dynein, cytoplasmic, heavy polypeptide 2 Dyneins, cytoplasmic 538 1995-11-15 2005-11-24 2016-03-02 2016-10-05 79659 ENSG00000187240 OTTHUMG00000165941 uc001phn.2 AB082528 XM_370652 "CCDS44717|CCDS53701" Q8NCM8 "9763680|9373155" MGI:107736 RGD:71042 DYNC2H1 603297 183938 +HGNC:24595 DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 protein-coding gene gene with protein product Approved 2p21 02p21 "D2LIC|LIC3|CGI-60|DKFZP564A033" Dyneins, cytoplasmic 538 2005-11-29 2016-03-02 2016-10-05 51626 ENSG00000138036 OTTHUMG00000128656 uc002rtk.3 NM_016008 "CCDS1813|CCDS46270|CCDS62903" Q8TCX1 "10810093|11907264" MGI:1913996 RGD:1310286 DYNC2LI1 617083 +HGNC:15476 DYNLL1 dynein light chain LC8-type 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "hdlc1|DLC1|PIN|LC8|DLC8" DNCL1 dynein, cytoplasmic, light polypeptide 1 Dyneins, cytoplasmic 538 2002-12-18 2005-11-25 2016-03-02 2016-10-05 8655 ENSG00000088986 OTTHUMG00000169368 uc001tyj.4 U32944 NM_003746 CCDS9200 P63167 "8628263|8864115|16260502" MGI:1861457 RGD:619866 DYNLL1 601562 +HGNC:20723 DYNLL1P1 dynein light chain LC8-type 1 pseudogene 1 pseudogene pseudogene Approved 14q31.1 14q31.1 DNCL1P1 dynein, cytoplasmic, light polypeptide 1 pseudogene 1 2003-03-24 2005-11-25 2016-03-02 2016-03-02 246720 ENSG00000205579 OTTHUMG00000171415 NG_001584 PGOHUM00000261846 +HGNC:20724 DYNLL1P2 dynein light chain LC8-type 1 pseudogene 2 pseudogene pseudogene Approved 14q31.1 14q31.1 DNCL1P2 dynein, cytoplasmic, light polypeptide 1 pseudogene 2 2003-03-24 2005-11-25 2016-03-02 2016-03-02 731308 ENSG00000258605 OTTHUMG00000171417 NG_031940 PGOHUM00000248243 +HGNC:49654 DYNLL1P3 dynein light chain LC8-type 1 pseudogene 3 pseudogene pseudogene Approved 1p36.13 01p36.13 2014-01-29 2016-03-02 2016-03-02 391012 ENSG00000235282 OTTHUMG00000002435 NG_005104 PGOHUM00000244625 +HGNC:49655 DYNLL1P4 dynein light chain LC8-type 1 pseudogene 4 pseudogene pseudogene Approved 12q24.13 12q24.13 2014-01-29 2016-03-02 2016-03-02 100129739 ENSG00000257231 OTTHUMG00000169645 NG_030129 PGOHUM00000239583 +HGNC:49656 DYNLL1P5 dynein light chain LC8-type 1 pseudogene 5 pseudogene pseudogene Approved 3q25.2 03q25.2 2014-01-29 2016-03-02 2016-03-02 106480681 ENSG00000242151 OTTHUMG00000159126 NG_043252 PGOHUM00000238237 +HGNC:49657 DYNLL1P6 dynein light chain LC8-type 1 pseudogene 6 pseudogene pseudogene Approved 4q23 04q23 2014-01-29 2016-03-02 2016-03-02 100288885 ENSG00000248820 OTTHUMG00000161020 NG_030214 PGOHUM00000245636 +HGNC:49658 DYNLL1P7 dynein light chain LC8-type 1 pseudogene 7 pseudogene pseudogene Approved 7q21.11 07q21.11 2014-01-29 2016-03-02 2016-03-02 729630 ENSG00000230614 OTTHUMG00000154586 NG_006625 PGOHUM00000232906 +HGNC:24596 DYNLL2 dynein light chain LC8-type 2 protein-coding gene gene with protein product Approved 17q22 17q22 "MGC17810|Dlc2|DNCL1B|RSPH22" radial spoke 22 homolog (Chlamydomonas) Dyneins, cytoplasmic 538 2005-11-25 2016-03-02 2016-03-02 140735 ENSG00000264364 OTTHUMG00000178783 uc010wnn.2 AF112997 NM_080677 CCDS11601 Q96FJ2 16260502 MGI:1915347 RGD:619860 DYNLL2 608942 +HGNC:15468 DYNLRB1 dynein light chain roadblock-type 1 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "DNLC2A|ROBLD1" roadblock domain containing 1 DNCL2A dynein, cytoplasmic, light polypeptide 2A Dyneins, cytoplasmic 538 2001-04-25 2005-11-25 2016-03-02 2016-10-05 83658 ENSG00000125971 OTTHUMG00000032302 uc002xal.5 AF132750 NM_014183 CCDS13235 Q9NP97 "11750132|16260502" MGI:1914318 RGD:619910 DYNLRB1 607167 +HGNC:15467 DYNLRB2 dynein light chain roadblock-type 2 protein-coding gene gene with protein product Approved 16q23.2 16q23.2 "DNLC2B|ROBLD2" roadblock domain containing 2 DNCL2B dynein, cytoplasmic, light polypeptide 2B Dyneins, cytoplasmic 538 2001-04-25 2005-11-25 2016-03-02 2016-10-05 83657 ENSG00000168589 OTTHUMG00000137622 uc002ffo.3 AF125108 NM_130897 "CCDS10929|CCDS76904" Q8TF09 "11750132|16260502" MGI:1922715 RGD:1306930 DYNLRB2 607168 +HGNC:11697 DYNLT1 dynein light chain Tctex-type 1 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 TCTEL1 t-complex-associated-testis-expressed 1-like 1 Dyneins, cytoplasmic 538 1996-03-12 2005-11-24 2016-03-02 2016-10-05 6993 ENSG00000146425 OTTHUMG00000015918 uc003qrn.3 D50663 NM_006519 CCDS5257 P63172 "8646886|16260502" "MGI:3807506|MGI:98643|MGI:3807476|MGI:3780996" RGD:620261 DYNLT1 601554 +HGNC:11694 DYNLT3 dynein light chain Tctex-type 3 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 TCTEX1L TCTE1L t-complex-associated-testis-expressed 1-like Dyneins, cytoplasmic 538 1994-12-19 2005-11-25 2016-03-02 2016-10-05 6990 ENSG00000165169 OTTHUMG00000033172 uc004dds.4 U02556 NM_006520 CCDS14243 P51808 8004092 MGI:1914367 RGD:1549755 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=DYNLT3 DYNLT3 300302 +HGNC:16571 DYNLT3P1 dynein light chain Tctex-type 3 pseudogene 1 pseudogene pseudogene Approved 20p12.1 20p12.1 dJ531H16.2 TCTE1P t-complex-associated-testis-expressed 1 pseudogene 2001-09-17 2009-05-13 2016-03-02 2016-03-02 170554 ENSG00000232241 OTTHUMG00000031939 AC010083 NG_001059 +HGNC:37081 DYNLT3P2 dynein light chain Tctex-type 3 pseudogene 2 pseudogene pseudogene Approved 2q14.3 02q14.3 2009-05-13 2016-03-02 2016-03-02 100381215 ENSG00000229758 OTTHUMG00000153544 NG_016784 PGOHUM00000240901 +HGNC:3091 DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding gene gene with protein product Approved 21q22.13 21q22.13 "DYRK1|DYRK|MNBH" "dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1A|dual specificity tyrosine-(Y)-phosphorylation regulated kinase 1A" 1999-01-29 2016-02-12 2016-02-12 1859 ENSG00000157540 OTTHUMG00000086657 uc002ywk.4 U52373 NM_001396 "CCDS13653|CCDS13654|CCDS42925|CCDS42926" Q13627 9284911 MGI:1330299 RGD:2528 DYRK1A 600855 270014 objectId:2009 +HGNC:14401 DYRK1AIP1 DYRK1A interacting protein 1 other unknown Approved reserved reserved 2001-01-30 2013-03-15 93980 +HGNC:14459 DYRK1AIP2 DYRK1A interacting protein 2 other unknown Approved reserved reserved 2001-01-30 2013-03-15 93981 +HGNC:3092 DYRK1B dual specificity tyrosine phosphorylation regulated kinase 1B protein-coding gene gene with protein product Approved 19q13.2 19q13.2 MIRK minibrain-related kinase "dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B|dual specificity tyrosine-(Y)-phosphorylation regulated kinase 1B" 1999-01-29 2016-02-12 2016-02-12 9149 ENSG00000105204 OTTHUMG00000182584 uc002omj.3 Y17999 NM_004714 "CCDS12543|CCDS12544|CCDS46075" Q9Y463 9918863 MGI:1330302 RGD:1307223 DYRK1B 604556 423021 objectId:2010 2.7.12.1 +HGNC:3093 DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 protein-coding gene gene with protein product Approved 12q15 12q15 "dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2|dual specificity tyrosine-(Y)-phosphorylation regulated kinase 2" 1998-10-29 2016-02-12 2016-02-12 8445 ENSG00000127334 OTTHUMG00000169089 uc001str.5 Y09216 XM_017020032 "CCDS8978|CCDS8979" Q92630 9748265 MGI:1330301 RGD:1312039 DYRK2 603496 objectId:2011 +HGNC:3094 DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "RED|REDK|hYAK3-2" "regulatory erythroid kinase|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 5|protein kinase Dyrk3" "dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3|dual specificity tyrosine-(Y)-phosphorylation regulated kinase 3" 1998-10-29 2016-02-12 2016-10-05 8444 ENSG00000143479 OTTHUMG00000036339 uc001hej.4 Y12735 NM_003582 "CCDS30999|CCDS31000" O43781 9748265 MGI:1330300 RGD:1310924 DYRK3 603497 objectId:2012 2.7.12.1 +HGNC:3095 DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 "dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4|dual specificity tyrosine-(Y)-phosphorylation regulated kinase 4" 1998-11-11 2016-02-12 2016-02-12 8798 ENSG00000010219 OTTHUMG00000168204 uc001qmx.5 Y09305 NM_003845 CCDS8530 Q9NR20 9748265 MGI:1330292 RGD:1306800 DYRK4 609181 objectId:2013 +HGNC:3097 DYSF dysferlin protein-coding gene gene with protein product Approved 2p13.2 02p13.2 FER1L1 fer-1-like family member 1 LGMD2B limb girdle muscular dystrophy 2B (autosomal recessive) Ferlin family 828 1994-03-24 2013-09-12 2016-10-12 8291 ENSG00000135636 OTTHUMG00000129757 uc002sie.4 AF075575 NM_003494 "CCDS1918|CCDS46323|CCDS46324|CCDS46325|CCDS46326|CCDS46327|CCDS46328|CCDS46329|CCDS46330|CCDS46331|CCDS46332" O75923 8320700 MGI:1349385 RGD:1311023 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/DYSF|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=DYSF|LRG_845|http://www.lrg-sequence.org/LRG/LRG_845" DYSF 603009 121246 +HGNC:3102 DYT2 dystonia 2, torsion (autosomal recessive) phenotype phenotype only Approved reserved reserved 1987-09-11 2007-06-19 1862 "3400517|2203908" +HGNC:3107 DYT7 dystonia 7, torsion (autosomal dominant) phenotype phenotype only Approved 18p 18p 1996-11-11 1998-07-16 1866 8894706 602124 +HGNC:3101 DYT13 dystonia 13, torsion phenotype phenotype only Approved 1p36 01p36 2000-06-01 2003-09-09 93983 607671 160001 +HGNC:31376 DYT15 dystonia 15, myoclonic phenotype phenotype only Approved 18p11 18p11 2004-03-25 2004-03-25 317714 12391345 607488 306169 +HGNC:35416 DYT17 dystonia 17 phenotype phenotype only Approved 20p11.22-q13.12 20p11.22-q13.12 2008-11-21 2008-11-21 100216344 18688663 612406 306184 +HGNC:39436 DYT21 dystonia 21, torsion (autosomal dominant) phenotype phenotype only Approved 2q14.3-q21.3 02q14.3-q21.3 2010-12-22 2011-03-18 100885773 21301909 614588 311367 +HGNC:39512 DYT22 dystonia 22 phenotype phenotype only Approved reserved reserved 2011-02-02 2015-05-22 +HGNC:23279 DYTN dystrotelin protein-coding gene gene with protein product Approved 2q33.3 02q33.3 Zinc fingers ZZ-type 91 2007-01-22 2015-08-25 391475 ENSG00000232125 OTTHUMG00000154729 uc002vbr.1 ABF55377 NM_001093730 CCDS46502 A2CJ06 17233888 MGI:2685061 RGD:2320917 DYTN +HGNC:3108 DYX1 dyslexia susceptibility 1 phenotype phenotype only Approved 15 15 RD 1996-07-19 2014-02-05 1867 "3652490|8981944" +HGNC:21493 DYX1C1 dyslexia susceptibility 1 candidate 1 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "EKN1|FLJ37882|CILD25|DNAAF4" dynein, axonemal, assembly factor 4 Tetratricopeptide repeat domain containing 769 2003-10-10 2015-08-27 161582 ENSG00000256061 OTTHUMG00000132008 uc002adc.3 NM_130810 "CCDS10154|CCDS32243|CCDS32244" Q8WXU2 "12954984|23872636" MGI:1914935 RGD:1549760 DYX1C1 608706 360484 +HGNC:43019 DYX1C1-CCPG1 DYX1C1-CCPG1 readthrough (NMD candidate) other readthrough Approved 15q21.3 15q21.3 2011-09-23 2013-05-09 2013-05-09 100533483 ENSG00000261771 OTTHUMG00000172694 uc059jmd.1 NR_037923 +HGNC:3109 DYX2 dyslexia susceptibility 2 phenotype phenotype only Approved 6 06 1996-07-19 1999-11-26 7939663 +HGNC:3110 DYX3 dyslexia susceptibility 3 phenotype phenotype only Approved 2p16-p15 02p16-p15 1999-09-08 1999-11-26 11192 10507721 604254 +HGNC:3111 DYX4 dyslexia susceptibility 4 phenotype phenotype only Approved 6q13-q16.2 06q13-q16.2 1999-11-26 2002-03-06 26300 11496366 +HGNC:18343 DYX5 dyslexia susceptibility 5 phenotype phenotype only Approved 3p12-q13 03p12-q13 2002-03-07 2002-03-07 171089 11584043 606896 +HGNC:19352 DYX6 dyslexia susceptibility 6 phenotype phenotype only Approved 18p11.2 18p11.2 2002-10-11 2002-10-11 266691 11743577 606616 +HGNC:19324 DYX7 dyslexia susceptibility 7 phenotype phenotype only Approved 11p15.5 11p15.5 2002-10-09 2002-10-14 2006-11-29 266726 14755455 +HGNC:19951 DYX8 dyslexia susceptibility 8 phenotype phenotype only Approved 1p36-p34 01p36-p34 2004-04-30 2004-10-21 406874 "11424982|15108193" 608995 +HGNC:16755 DYX9 dyslexia susceptibility 9 phenotype phenotype only Approved Xq27.3 Xq27.3 DXY9 2005-02-22 2006-06-08 2006-06-08 474159 15342694 300509 +HGNC:15858 DZANK1 double zinc ribbon and ankyrin repeat domains 1 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "FLJ10600|dJ568F9.2|FLJ30892|bA189K21.8|ANKRD64" ankyrin repeat domain 64 "C20orf84|C20orf12" chromosome 20 open reading frame 12 Ankyrin repeat domain containing 403 2001-06-21 2011-10-03 2011-10-03 2015-08-25 55184 ENSG00000089091 OTTHUMG00000031968 uc002wqq.5 AK001462 NM_001099407 CCDS46582 Q9NVP4 MGI:2139080 RGD:1311344 DZANK1 +HGNC:20908 DZIP1 DAZ interacting zinc finger protein 1 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "KIAA0996|DZIP" DAZ interacting protein 1 2003-12-09 2013-05-22 2015-08-25 22873 ENSG00000134874 OTTHUMG00000017224 uc058xua.1 AB023213 NM_014934 "CCDS9477|CCDS9478" Q86YF9 MGI:1914311 RGD:1307701 DZIP1 608671 +HGNC:26551 DZIP1L DAZ interacting zinc finger protein 1 like protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "FLJ32844|DZIP2" "DAZ interacting protein 1-like|DAZ interacting zinc finger protein 1-like" 2005-02-04 2016-01-26 2016-01-26 199221 ENSG00000158163 OTTHUMG00000159819 uc003erq.4 AK057406 NM_173543 "CCDS3096|CCDS54645" Q8IYY4 12477932 MGI:1919757 RGD:1311430 DZIP1L +HGNC:30938 DZIP3 DAZ interacting zinc finger protein 3 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 "hRUL138|PPP1R66" "human RNA-binding ubiquitin ligase of 138 kDa|protein phosphatase 1, regulatory subunit 66" DAZ interacting protein 3, zinc finger "Ring finger proteins|Protein phosphatase 1 regulatory subunits" "58|694" 2007-08-20 2013-05-22 2014-11-19 9666 ENSG00000198919 OTTHUMG00000159232 uc003dxd.4 AF279370 NM_014648 CCDS2952 Q86Y13 "9734811|12538761" MGI:1917433 RGD:1563278 DZIP3 608672 +HGNC:3113 E2F1 E2F transcription factor 1 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 RBP3 RBBP3 E2F transcription factors 982 1993-06-29 2016-10-05 1869 ENSG00000101412 OTTHUMG00000032265 uc002wzu.5 NM_005225 CCDS13224 Q01094 8964493 MGI:101941 RGD:728892 E2F1 189971 +HGNC:3114 E2F2 E2F transcription factor 2 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 E2F-2 E2F transcription factors 982 1994-08-31 2016-10-05 1870 ENSG00000007968 OTTHUMG00000003223 uc001bhe.3 L22846 NM_004091 CCDS236 Q14209 "8246995|8246996" MGI:1096341 RGD:1593939 E2F2 600426 +HGNC:3115 E2F3 E2F transcription factor 3 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 E2F transcription factors 982 1994-08-31 2016-10-05 1871 ENSG00000112242 OTTHUMG00000016389 uc003nda.3 Y10479 XM_011514324 "CCDS4545|CCDS58999" O00716 8246996 MGI:1096340 RGD:1561600 E2F3 600427 +HGNC:41329 E2F3-IT1 E2F3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6p22.3 06p22.3 E2F3 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874268 ENSG00000224707 OTTHUMG00000014337 uc063mco.1 +HGNC:3116 E2F3P1 E2F transcription factor 3 pseudogene 1 pseudogene pseudogene Approved 17q12 17q12 1994-08-31 2014-11-28 1872 ENSG00000267046 OTTHUMG00000179902 NG_005634 8246996 PGOHUM00000294398 +HGNC:3117 E2F3P2 E2F transcription factor 3 pseudogene 2 pseudogene pseudogene Approved 2q32.3 02q32.3 1994-08-31 2014-11-28 100420003 ENSG00000203435 OTTHUMG00000154439 NG_023648 8246996 PGOHUM00000298271 +HGNC:3118 E2F4 E2F transcription factor 4 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 E2F-4 E2F transcription factor 4, p107/p130-binding E2F transcription factors 982 1995-02-01 2016-01-18 2016-01-18 1874 ENSG00000205250 OTTHUMG00000172975 uc002erz.4 BC021050 NM_001950 CCDS32464 Q16254 "7958924|7892279" MGI:103012 RGD:2322129 E2F4 600659 +HGNC:38684 E2F4P1 E2F transcription factor 4 pseudogene 1 pseudogene pseudogene Approved 6p21.2 06p21.2 2010-07-20 2016-01-18 2016-01-18 100131899 ENSG00000231276 OTTHUMG00000014650 NG_022354 PGOHUM00000243616 +HGNC:3119 E2F5 E2F transcription factor 5 protein-coding gene gene with protein product Approved 8q21.2 08q21.2 E2F transcription factor 5, p130-binding E2F transcription factors 982 1995-09-06 2016-01-18 2016-01-18 1875 ENSG00000133740 OTTHUMG00000164785 uc003yda.6 X86097 NM_001951 "CCDS47885|CCDS47886|CCDS55254" Q15329 7892279 MGI:105091 RGD:621357 E2F5 600967 +HGNC:3120 E2F6 E2F transcription factor 6 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 E2F-6 E2F transcription factors 982 1998-04-07 2015-08-25 1876 ENSG00000169016 OTTHUMG00000090565 uc002rbh.5 AF041381 NM_001952 "CCDS1680|CCDS62858|CCDS62859" O75461 9501179 MGI:1354159 RGD:631412 E2F6 602944 +HGNC:51449 E2F6P1 E2F transcription factor 6 pseudogene 1 pseudogene pseudogene Approved 22q11.21 22q11.21 E2F6 pseudogene 1 2014-11-28 2015-04-07 2015-04-07 386610 ENSG00000234764 OTTHUMG00000150178 NG_003106 PGOHUM00000297629 +HGNC:51450 E2F6P2 E2F transcription factor 6 pseudogene 2 pseudogene pseudogene Approved 22q11.21 22q11.21 E2F6 pseudogene 2 2014-11-28 2015-04-07 2015-04-07 376818 ENSG00000224688 OTTHUMG00000150785 NG_003105 PGOHUM00000297475 +HGNC:51451 E2F6P3 E2F transcription factor 6 pseudogene 3 pseudogene pseudogene Approved 22q11.21 22q11.21 E2F6 pseudogene 3 2014-11-28 2015-04-07 2015-04-07 100420178 ENSG00000226885 OTTHUMG00000150760 NG_027460 PGOHUM00000297646 +HGNC:51452 E2F6P4 E2F transcription factor 6 pseudogene 4 pseudogene pseudogene Approved Xq26.3 Xq26.3 E2F6 pseudogene 4 2014-11-28 2015-04-07 2015-04-07 139542 ENSG00000231513 OTTHUMG00000022502 NG_006865 PGOHUM00000304873 +HGNC:23820 E2F7 E2F transcription factor 7 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 E2F transcription factors 982 2003-12-11 2016-10-05 144455 ENSG00000165891 OTTHUMG00000169969 uc001sym.5 BC016658 XM_084871 CCDS9016 Q96AV8 12893818 MGI:1289147 RGD:1310258 E2F7 612046 +HGNC:24727 E2F8 E2F transcription factor 8 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 FLJ23311 E2F transcription factors 982 2005-09-10 2016-10-05 79733 ENSG00000129173 OTTHUMG00000166102 uc001mpn.6 NM_024680 CCDS7849 A0AVK6 15722552 MGI:1922038 RGD:1308091 E2F8 612047 +HGNC:3121 E4F1 E4F transcription factor 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 E4F Zinc fingers C2H2-type 28 1996-04-12 2015-05-18 1877 ENSG00000167967 OTTHUMG00000177084 uc002cpm.5 U87269 NM_004424 "CCDS32370|CCDS73809|CCDS73810" Q66K89 "8828041|9530632|9763670" MGI:109530 RGD:1596731 E4F1 603022 +HGNC:3112 E11S ECHO virus (serotypes 4, 6, 11, 19) sensitivity phenotype phenotype only Approved 19q13.1-q13.3 19q13.1-q13.3 2001-06-22 2012-10-02 1878 129150 +HGNC:20907 EAF1 ELL associated factor 1 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 2003-09-17 2015-09-11 85403 ENSG00000144597 OTTHUMG00000162544 uc003bzu.4 AF272973 NM_033083 CCDS2626 Q96JC9 11418481 MGI:1921677 RGD:1310057 EAF1 608315 +HGNC:42328 EAF1-AS1 EAF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.1 03p25.1 EAF1 antisense RNA 1 (non-protein coding) 2011-06-10 2012-08-15 2014-11-19 100873956 ENSG00000249786 OTTHUMG00000129858 uc062hcx.1 +HGNC:23115 EAF2 ELL associated factor 2 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "BM040|TRAITS|U19" 2003-09-17 2016-10-05 55840 ENSG00000145088 OTTHUMG00000159424 uc003een.4 AF517829 NM_018456 CCDS3006 Q96CJ1 "12446457|12907652" MGI:2146616 RGD:628879 EAF2 607659 +HGNC:19312 EAPP E2F associated phosphoprotein protein-coding gene gene with protein product Approved 14q13.1 14q13.1 "BM036|FLJ20578" C14orf11 chromosome 14 open reading frame 11 2002-11-18 2007-03-26 2016-02-26 2016-02-26 55837 ENSG00000129518 OTTHUMG00000170621 uc001wsd.2 AF217512 NM_018453 CCDS41941 Q56P03 15716352 MGI:1913516 RGD:1309624 EAPP 609486 +HGNC:29419 EARS2 glutamyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "KIAA1970|MSE1" glutamate tRNA ligase 2, mitochondrial glutamyl-tRNA synthetase 2, mitochondrial (putative) Aminoacyl tRNA synthetases, Class I 131 2006-04-04 2012-10-26 2014-11-19 124454 ENSG00000103356 OTTHUMG00000177018 uc002dlt.5 AB075850 NM_133451 "CCDS42132|CCDS76844" Q5JPH6 "15779907|19805282|22492562" MGI:1914667 RGD:1307904 EARS2 612799 317719 6.1.1.17 +HGNC:3123 EBAG9 estrogen receptor binding site associated, antigen, 9 protein-coding gene gene with protein product Approved 8q23.2 08q23.2 "EB9|RCAS1" 2000-03-30 2016-10-05 9166 ENSG00000147654 OTTHUMG00000165346 uc003yng.5 AB007619 NM_004215 CCDS6313 O00559 MGI:1859920 RGD:1307293 EBAG9 605772 +HGNC:45233 EBAG9P1 estrogen receptor binding site associated, antigen, 9 pseudogene 1 pseudogene pseudogene Approved 10q24.2 10q24.2 2013-03-07 2013-03-07 100422254 ENSG00000233690 OTTHUMG00000018890 NG_025459 PGOHUM00000257784 +HGNC:3126 EBF1 early B-cell factor 1 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 OLF1 EBF early B-cell factor 1995-11-23 2006-09-26 2006-09-26 2016-10-05 1879 ENSG00000164330 OTTHUMG00000130304 uc010jip.4 AF208502 NM_024007 "CCDS4343|CCDS78081" Q9UH73 8012110 MGI:95275 RGD:620953 EBF1 164343 +HGNC:19090 EBF2 early B-cell factor 2 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "FLJ11500|COE2" 2002-08-09 2016-10-05 64641 ENSG00000221818 OTTHUMG00000163838 uc003xes.3 "AK021562|AK001144" NM_022659 CCDS43726 Q9HAK2 9151732 MGI:894332 RGD:1310805 EBF2 609934 +HGNC:19087 EBF3 early B-cell factor 3 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "COE3|DKFZp667B0210" 2002-11-11 2015-08-26 253738 ENSG00000108001 OTTHUMG00000019265 uc001lki.3 NM_001005463 CCDS31314 Q9H4W6 12355068 MGI:894289 RGD:1304956 EBF3 607407 +HGNC:29278 EBF4 early B-cell factor 4 protein-coding gene gene with protein product Approved 20p13 20p13 "KIAA1442|COE4|RP5-860F19.3|O/E-4" 2007-06-07 2015-08-26 57593 ENSG00000088881 OTTHUMG00000031709 uc002wgt.5 BC019106 XM_938882 CCDS46573 Q9BQW3 10718198 MGI:2385972 RGD:1588215 609935 +HGNC:3129 EBI3 Epstein-Barr virus induced 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "IL27B|IL35B" "IL27 subunit|IL35 subunit" "Fibronectin type III domain containing|Minor histocompatibility antigens" "555|870" 2000-05-02 2008-09-12 2016-10-06 10148 ENSG00000105246 OTTHUMG00000181866 uc002lzu.4 L08187 XM_011527619 CCDS12123 Q14213 8551575 MGI:1354171 RGD:1589467 EBI3 605816 +HGNC:39430 EBLN1 endogenous Bornavirus-like nucleoprotein 1 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 endogenous Borna-like N element 1 2011-06-03 2015-08-26 340900 ENSG00000223601 OTTHUMG00000017801 uc021pob.2 AA813437 NM_001199938 CCDS60498 P0CF75 "20054395|20686665" 613249 +HGNC:25493 EBLN2 endogenous Bornavirus-like nucleoprotein 2 protein-coding gene gene with protein product Approved 3p13 03p13 endogenous Borna-like N element 2 2011-06-03 2014-11-18 55096 ENSG00000255423 OTTHUMG00000165897 uc003dpj.4 NM_018029 CCDS54608 Q6P2I7 "20054395|20686665" EBLN2 613250 +HGNC:50682 EBLN3P endogenous Bornavirus-like nucleoprotein 3, pseudogene pseudogene pseudogene Approved 9p13.2 09p13.2 EBLN3 endogenous Bornavirus-like nucleoprotein 3 2014-06-05 2016-07-19 2016-07-19 2016-07-19 100506710 ENSG00000281649 OTTHUMG00000019910 NR_036592 PGOHUM00000304173 +HGNC:3130 EBM epidermolysis bullosa, macular type phenotype phenotype only Approved X X 2001-06-22 2012-10-02 1881 302000 +HGNC:15531 EBNA1BP2 EBNA1 binding protein 2 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "NOBP|EBP2|P40" EBNA1-binding protein 2 2001-10-16 2001-11-28 2016-10-05 10969 ENSG00000117395 OTTHUMG00000007284 uc001cin.4 U86602 NM_001159936 "CCDS478|CCDS53308" Q99848 "10074103|11438656" MGI:1916322 RGD:1305762 EBNA1BP2 614443 +HGNC:3133 EBP emopamil binding protein (sterol isomerase) protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "CPX|CPXD|CHO2" "3-beta-hydroxysteroid-delta-8,delta-7-isomerase|Chondrodysplasia punctata-2, X-linked dominant (Happle syndrome)|sterol 8-isomerase" CDPX2 emopamil-binding protein (sterol isomerase) 2000-02-21 2001-11-28 2016-10-05 10682 ENSG00000147155 OTTHUMG00000034482 uc004djx.5 Z37986 NM_006579 CCDS14300 Q15125 "7706302|8938429" MGI:107822 RGD:620957 EBP 300205 121250 +HGNC:18061 EBPL emopamil binding protein like protein-coding gene gene with protein product Approved 13q14.2 13q14.2 EBRP emopamil binding protein-like 2004-04-16 2016-02-01 2016-10-05 84650 ENSG00000123179 OTTHUMG00000016920 uc001vdg.5 AF243433 NM_032565 "CCDS9420|CCDS61334" Q9BY08 MGI:1915427 RGD:1304571 EBPL +HGNC:3136 EBR3 epidermolysis bullosa 3, progressiva phenotype phenotype only Approved reserved reserved ULG4 2001-06-22 2012-10-02 1884 2791656 226500 +HGNC:3137 EBR4 epidermolysis bullosa 4, pseudojunctional (intraepidermal) phenotype phenotype only Approved reserved reserved 1991-07-15 2011-02-25 1885 +HGNC:3142 EBVM1 Epstein Barr virus modification site 1 other region Approved 11q23.1 11q23.1 2001-06-22 2012-10-02 1887 "2843323|14526168|1327661" +HGNC:3143 EBVS1 Epstein Barr virus integration site 1 other virus integration site Approved 1p35 01p35 Epstein Barr virus insertion site 1 1988-07-29 2010-06-17 2010-06-17 1888 K02579 6095452 132850 +HGNC:3144 ECA1 epilepsy, childhood absence 1 phenotype phenotype only Approved 8q24 08q24 2000-05-02 2000-05-02 50966 600131 +HGNC:17029 ECD ecdysoneless cell cycle regulator protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "hSGT1|GCR2" ecdysoneless homolog (Drosophila) 2006-02-06 2016-01-15 2016-01-15 11319 ENSG00000122882 OTTHUMG00000018451 uc001jtn.4 BC000721 NM_007265 "CCDS7321|CCDS44433|CCDS44434" O95905 "9928932|15128659" MGI:1917851 RGD:1565023 ECD 616464 +HGNC:3146 ECE1 endothelin converting enzyme 1 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 ECE 1995-12-08 2016-10-05 1889 ENSG00000117298 OTTHUMG00000002625 uc001bek.3 D49471 NM_001397 "CCDS215|CCDS44081|CCDS44082|CCDS44083" P42892 "7805846|7864876|17592116" MGI:1101357 RGD:620293 ECE1 600423 121255 M13.002 objectId:1615 +HGNC:13275 ECE2 endothelin converting enzyme 2 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "KIAA0604|MGC2408" 2003-09-03 2015-08-27 9718 ENSG00000145194 OTTHUMG00000150551 uc003fni.5 AF428263 NM_014693 "CCDS3255|CCDS33899|CCDS3256|CCDS43179|CCDS46969" O60344 11718899 MGI:1101356 RGD:1303039 ECE2 610145 M13.003 objectId:1616 +HGNC:3147 ECEL1 endothelin converting enzyme like 1 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "XCE|DINE" damage induced neuronal endopeptidase 1999-04-22 2016-05-27 2016-05-27 9427 ENSG00000171551 OTTHUMG00000133262 uc002vsv.3 Y16187 NM_004826 "CCDS2493|CCDS77540" O95672 "9931490|11352565" MGI:1343461 RGD:61806 ECEL1 605896 323407 M13.007 +HGNC:14017 ECEL1P1 endothelin converting enzyme like 1 pseudogene 1 pseudogene pseudogene Approved 2q37.1 02q37.1 2002-08-30 2016-06-07 2016-06-07 100131546 ENSG00000204121 OTTHUMG00000153336 NG_028777 11352565 PGOHUM00000298352 +HGNC:14019 ECEL1P2 endothelin converting enzyme like 1 pseudogene 2 pseudogene pseudogene Approved 2q37.1 02q37.1 ECEL2 2002-08-30 2016-06-07 2016-06-07 347694 ENSG00000244280 OTTHUMG00000153343 BC067110 NR_028501 "11352565|10698686" PGOHUM00000298351 +HGNC:14018 ECEL1P3 endothelin converting enzyme like 1 pseudogene 3 pseudogene pseudogene Approved 2q37.1 02q37.1 2002-08-30 2016-06-07 2016-06-07 260332 ENSG00000230122 OTTHUMG00000153353 NG_002700 11352565 PGOHUM00000298350 +HGNC:3149 ECH1 enoyl-CoA hydratase 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 HPXEL "delta3,5-delta2,4-dienoyl-coenzyme A isomerase|peroxisomal enoyl-CoA hydratase 1" "enoyl Coenzyme A hydratase 1, peroxisomal|enoyl-CoA hydratase 1, peroxisomal" 1995-04-26 2016-06-30 2016-10-05 1891 ENSG00000104823 OTTHUMG00000182609 uc002oji.4 U16660 XM_017026448 CCDS33014 Q13011 7558027 MGI:1858208 RGD:69353 ECH1 600696 +HGNC:21489 ECHDC1 ethylmalonyl-CoA decarboxylase 1 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 dJ351K20.2 "enoyl Coenzyme A hydratase domain containing 1|enoyl CoA hydratase domain containing 1" 2003-11-26 2014-11-18 2015-09-11 55862 ENSG00000093144 OTTHUMG00000015523 uc003qaz.5 AK025796 XM_005267047 "CCDS34530|CCDS43504|CCDS47471|CCDS47472|CCDS55054" Q9NTX5 22016388 MGI:1277169 RGD:1359654 ECHDC1 612136 4.1.1.94 +HGNC:23408 ECHDC2 enoyl-CoA hydratase domain containing 2 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 FLJ10948 enoyl Coenzyme A hydratase domain containing 2 2005-01-12 2015-11-11 2015-11-11 55268 ENSG00000121310 OTTHUMG00000008927 uc001cup.5 AF258590 NM_018281 "CCDS571|CCDS55600|CCDS72794" Q86YB7 MGI:1289238 RGD:1308525 ECHDC2 +HGNC:23489 ECHDC3 enoyl-CoA hydratase domain containing 3 protein-coding gene gene with protein product Approved 10p14 10p14 FLJ20909 enoyl Coenzyme A hydratase domain containing 3 2003-11-20 2015-11-11 2015-11-11 79746 ENSG00000134463 OTTHUMG00000017675 uc001ikw.5 AF275677 NM_024693 CCDS7084 Q96DC8 12477932 MGI:1915106 RGD:1589147 ECHDC3 +HGNC:3151 ECHS1 enoyl-CoA hydratase, short chain 1 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 SCEH short chain enoyl-CoA hydratase "enoyl Coenzyme A hydratase, short chain, 1, mitochondrial|enoyl-CoA hydratase, short chain, 1, mitochondrial" 1996-12-17 2016-06-30 2016-10-05 1892 ENSG00000127884 OTTHUMG00000019320 uc001lmu.4 NM_004092 CCDS7681 P30084 "8012501|25393721" MGI:2136460 RGD:69330 ECHS1 602292 426564 4.2.1.17 +HGNC:2703 ECI1 enoyl-CoA delta isomerase 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 3,2 trans-enoyl-CoA isomerase DCI "dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase)|dodecenoyl-CoA isomerase" 1994-02-23 2011-03-15 2011-03-15 2015-08-25 1632 ENSG00000167969 OTTHUMG00000128830 uc002cpr.4 NM_001178029 "CCDS10464|CCDS58410" P42126 7829074 MGI:94871 RGD:61892 ECI1 600305 5.3.3.8 +HGNC:14601 ECI2 enoyl-CoA delta isomerase 2 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "ACBD2|DRS1|HCA88" "acyl-Coenzyme A binding domain containing 2| Hepatocellular carcinoma-associated antigen 88" PECI peroxisomal D3,D2-enoyl-CoA isomerase 2001-07-17 2011-03-15 2011-03-15 2016-10-05 10455 ENSG00000198721 OTTHUMG00000014158 uc003mwf.4 AF069301 NM_006117 "CCDS43420|CCDS4490" O75521 10419495 MGI:1346064 RGD:1359427 ECI2 608024 +HGNC:3153 ECM1 extracellular matrix protein 1 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 1996-09-19 2016-10-05 1893 ENSG00000143369 OTTHUMG00000012806 uc001eus.4 U68186 NM_004425 "CCDS953|CCDS954|CCDS55632" Q16610 "9367673|9501329" MGI:103060 RGD:620357 ECM1 602201 121261 +HGNC:49736 ECM1P1 extracellular matrix protein 1 pseudogene 1 pseudogene pseudogene Approved 9p24.1 09p24.1 2014-02-13 2014-02-13 100420354 ENSG00000270639 OTTHUMG00000184620 NG_023776 PGOHUM00000235947 +HGNC:49737 ECM1P2 extracellular matrix protein 1 pseudogene 2 pseudogene pseudogene Approved 4p15.33 04p15.33 2014-02-13 2014-02-13 106481698 ENSG00000249995 OTTHUMG00000160087 NG_043188 PGOHUM00000245853 +HGNC:3154 ECM2 extracellular matrix protein 2 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 matrix glycoprotein SC1/ECM2 extracellular matrix protein 2, female organ and adipocyte specific 1998-03-25 2016-03-15 2016-10-05 1842 ENSG00000106823 OTTHUMG00000020226 uc011lty.3 AB011792 NM_001393 "CCDS6698|CCDS56578" O94769 9790758 MGI:3039578 RGD:2320282 ECM2 603479 +HGNC:35454 ECSCR endothelial cell surface expressed chemotaxis and apoptosis regulator protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "ECSM2|ARIA" "endothelial cell-specific molecule 2|apoptosis regulator through modulating IAP expression" endothelial cell-specific chemotaxis regulator 2009-02-12 2012-03-21 2012-03-21 641700 ENSG00000249751 OTTHUMG00000163240 uc032vne.2 DQ462572 NM_001077693 CCDS75317 Q19T08 18556573 MGI:1915795 RGD:1594804 ECSCR 615736 +HGNC:29548 ECSIT ECSIT signalling integrator protein-coding gene gene with protein product Approved 19p13.2 19p13.2 SITPEC signaling intermediate in Toll pathway evolutionarily conserved ortholog (mouse) ECSIT homolog (Drosophila) Mitochondrial respiratory chain complex assembly factors 645 2006-08-08 2013-05-24 2014-11-19 51295 ENSG00000130159 OTTHUMG00000178590 uc002msb.4 BC005119 NM_016581 "CCDS12262|CCDS45979|CCDS45980|CCDS59353" Q9BQ95 "10465784|22982022" MGI:1349469 RGD:1359488 ECSIT 608388 +HGNC:3155 ECT2 epithelial cell transforming 2 protein-coding gene gene with protein product Approved 3q26.31 03q26.31 ARHGEF31 epithelial cell transforming sequence 2 oncogene Rho guanine nucleotide exchange factors 722 1993-10-15 2014-03-11 2016-10-05 1894 ENSG00000114346 OTTHUMG00000156762 uc003fii.4 AA206473 NM_018098 "CCDS3220|CCDS58860" Q9H8V3 "8464478|10579713" MGI:95281 RGD:1308524 ECT2 600586 +HGNC:21118 ECT2L epithelial cell transforming 2 like protein-coding gene gene with protein product Approved 6q24.1 06q24.1 "ARHGEF32|FBXO49|LFDH" "lung specific F-box and DH domain containing protein|F-box protein 49" C6orf91 "chromosome 6 open reading frame 91|epithelial cell transforming sequence 2 oncogene-like" "F-boxes other|Rho guanine nucleotide exchange factors" "560|722" 2003-11-26 2014-03-11 2015-08-25 345930 ENSG00000203734 OTTHUMG00000015679 uc063rvm.1 NM_001077706 CCDS43508 Q008S8 MGI:3641723 RGD:2319083 ECT2L +HGNC:3156 ED# entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3157 EDA ectodysplasin A protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "EDA1|XLHED|HED|XHED|ED1-A1|ED1-A2|EDA-A1|EDA-A2" "ED1|EDA2|ODT1" "ectodermal dysplasia 1, anhidrotic|oligodontia 1" Tumor necrosis factor superfamily 781 2001-06-22 2004-08-12 2004-08-09 2016-10-05 1896 ENSG00000158813 OTTHUMG00000021764 uc004dxr.4 U59227 NM_001399 "CCDS14394|CCDS35318|CCDS35319|CCDS43966|CCDS55436" Q92838 "8696334|18657636|16583127" MGI:1195272 RGD:1563178 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=EDA EDA 300451 121263 +HGNC:17756 EDA2R ectodysplasin A2 receptor protein-coding gene gene with protein product Approved Xq12 Xq12 "XEDAR|EDA-A2R|EDAA2R|TNFRSF27" Tumor necrosis factor receptor superfamily 782 2004-08-17 2016-10-05 60401 ENSG00000131080 OTTHUMG00000021736 uc004dwq.4 AF298812 NM_021783 "CCDS14386|CCDS56603" Q9HAV5 11039935 MGI:2442860 RGD:1564025 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=EDA2R EDA2R 300276 325286 objectId:1896 +HGNC:2895 EDAR ectodysplasin A receptor protein-coding gene gene with protein product Approved 2q13 02q13 "ED5|EDA3|Edar|ED1R|EDA1R" "ED3|DL" ectodysplasin 1, anhidrotic receptor Tumor necrosis factor receptor superfamily 782 1999-08-09 2004-08-09 2015-08-25 10913 ENSG00000135960 OTTHUMG00000130982 uc002teq.4 AF130988 XM_011510502 CCDS2081 Q9UNE0 "10431241|9375732" MGI:1343498 RGD:1561714 EDAR 604095 121273 objectId:2325 +HGNC:14341 EDARADD EDAR associated death domain protein-coding gene gene with protein product Approved 1q42.3-q43 01q42.3-q43 2002-02-08 2016-06-10 2016-10-11 128178 ENSG00000186197 OTTHUMG00000039954 uc001hxu.2 AY028914 NM_145861 "CCDS1610|CCDS31065" Q8WWZ3 11780064 MGI:1931001 RGD:1564010 EDARADD 606603 121282 +HGNC:26114 EDC3 enhancer of mRNA decapping 3 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "FLJ21128|hYjeF_N2-15q23|YJEFN2|LSM16" LSM16 homolog (EDC3, S. cerevisiae) YJDC "yjeF domain containing (E.coli)|enhancer of mRNA decapping 3 homolog (S. cerevisiae)" 2005-10-24 2006-07-07 2013-05-02 2015-06-25 80153 ENSG00000179151 OTTHUMG00000142815 uc002aym.4 BC011534 NM_025083 CCDS10267 Q96F86 "15225602|17533573|22483619" MGI:2142951 RGD:1306898 EDC3 609842 434391 +HGNC:17157 EDC4 enhancer of mRNA decapping 4 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "RCD-8|Ge-1|HEDLS" 2006-07-07 2014-11-19 23644 ENSG00000038358 OTTHUMG00000137543 uc002eur.4 U17474 NM_014329 CCDS10849 Q6P2E9 9067524 MGI:2446249 RGD:1562009 EDC4 606030 +HGNC:16978 EDDM3A epididymal protein 3A protein-coding gene gene with protein product Approved 14q11.2 14q11.2 HE3-ALPHA FAM12A family with sequence similarity 12, member A 2002-09-23 2010-01-27 2010-01-27 2016-10-05 10876 ENSG00000181562 OTTHUMG00000029581 uc001vyc.4 X76383 XM_017020934 CCDS9556 Q14507 7514008 MGI:2684921 EDDM3A 611580 +HGNC:19223 EDDM3B epididymal protein 3B protein-coding gene gene with protein product Approved 14q11.2 14q11.2 HE3-BETA FAM12B family with sequence similarity 12, member B (epididymal) 2002-09-23 2010-01-27 2010-01-27 2016-10-05 64184 ENSG00000181552 OTTHUMG00000029583 uc001vyd.3 X76386 NM_022360 CCDS9557 P56851 7514008 MGI:2684921 RGD:631349 EDDM3B 611582 +HGNC:19224 EDDM3CP epididymal protein 3C, pseudogene pseudogene pseudogene Approved 2q21.3 02q21.3 HE3-GAMMA FAM12CP family with sequence similarity 12, member C (pseudogene) 2002-09-23 2010-01-27 2011-04-15 2016-10-05 266643 ENSG00000234060 OTTHUMG00000153734 X76387 NG_002367 7514008 PGOHUM00000240352 +HGNC:37707 EDDM3DP epididymal protein 3D, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 2010-06-17 2011-04-15 2014-11-19 100128220 ENSG00000258963 OTTHUMG00000171014 NG_028961 PGOHUM00000248044 +HGNC:18967 EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 protein-coding gene gene with protein product Approved 3p26.1 03p26.1 "KIAA0212|EDEM" ER degradation enhancer, mannosidase alpha-like 1 2003-10-03 2016-04-05 2016-04-05 9695 ENSG00000134109 OTTHUMG00000154896 uc003bqi.4 D86967 NM_014674 CCDS33686 Q92611 12610306 MGI:2180139 RGD:1563633 EDEM1 607673 +HGNC:15877 EDEM2 ER degradation enhancing alpha-mannosidase like protein 2 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "FLJ10783|bA4204.1" "C20orf49|C20orf31" "chromosome 20 open reading frame 31|ER degradation enhancer, mannosidase alpha-like 2" 2001-06-21 2006-03-31 2016-04-05 2016-04-05 55741 ENSG00000088298 OTTHUMG00000032322 uc002xbo.3 AK001645 NM_018217 "CCDS13247|CCDS46592" Q9BV94 "15537790|15579471" MGI:1915540 RGD:1303074 EDEM2 610302 +HGNC:16787 EDEM3 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 C1orf22 "chromosome 1 open reading frame 22|ER degradation enhancer, mannosidase alpha-like 3" 2001-10-08 2006-03-31 2016-04-05 2016-10-05 80267 ENSG00000116406 OTTHUMG00000035387 uc010pok.3 AF288393 NM_025191 CCDS1363 Q9BZQ6 "15537790|15579471" MGI:1914217 RGD:1561496 EDEM3 610214 +HGNC:3164 EDF1 endothelial differentiation related factor 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "EDF-1|CFAP280" multiprotein bridging factor-1 endothelial differentiation-related factor 1 1999-01-07 2016-03-15 2016-03-15 8721 ENSG00000107223 OTTHUMG00000020948 uc004cjt.3 AJ005259 NM_003792 "CCDS7011|CCDS7012|CCDS65193" O60869 "9813014|15112053" MGI:1891227 RGD:1308073 EDF1 605107 +HGNC:3173 EDIL3 EGF like repeats and discoidin domains 3 protein-coding gene gene with protein product Approved 5q14.3 05q14.3 DEL1 EGF-like repeats and discoidin I-like domains 3 1999-12-16 2016-01-21 2016-10-05 10085 ENSG00000164176 OTTHUMG00000119047 uc003kio.3 U70312 NM_005711 "CCDS4062|CCDS64195" O43854 9420328 MGI:1329025 RGD:1588887 EDIL3 606018 +HGNC:3176 EDN1 endothelin 1 protein-coding gene gene with protein product Approved 6p24.1 06p24.1 ET1 Endogenous ligands 542 1989-04-06 2015-08-25 1906 ENSG00000078401 OTTHUMG00000014266 uc003nae.5 S56805 NM_001955 CCDS4522 P05305 MGI:95283 RGD:2532 EDN1 131240 376969 +HGNC:3177 EDN2 endothelin 2 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 ET2 Endogenous ligands 542 1989-09-06 2016-10-05 1907 ENSG00000127129 OTTHUMG00000006362 uc001cgx.4 M65199 NM_001956 CCDS462 P20800 MGI:95284 RGD:2533 EDN2 131241 +HGNC:3178 EDN3 endothelin 3 protein-coding gene gene with protein product Approved 20q13.32 20q13.32 ET3 Endogenous ligands 542 1989-09-06 2016-10-05 1908 ENSG00000124205 OTTHUMG00000032867 uc002yaq.4 X52001 NM_000114 "CCDS13477|CCDS13478|CCDS13479|CCDS77597" P14138 MGI:95285 RGD:2534 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/WS/home.php?select_db=EDN3 EDN3 131242 121284 +HGNC:3179 EDNRA endothelin receptor type A protein-coding gene gene with protein product Approved 4q31.22-q31.23 04q31.22-q31.23 Endothelin receptors 225 1992-02-13 2016-10-11 1909 ENSG00000151617 OTTHUMG00000161354 uc003iky.4 D90348 NM_001957 "CCDS3769|CCDS54810|CCDS58927" P25101 1659806 MGI:105923 RGD:2535 EDNRA 131243 448610 objectId:219 +HGNC:3180 EDNRB endothelin receptor type B protein-coding gene gene with protein product Approved 13q22.3 13q22.3 ETB "HSCR2|HSCR" Endothelin receptors 225 1992-02-13 2016-10-05 1910 ENSG00000136160 OTTHUMG00000017111 uc001vko.3 L06623 NM_000115 "CCDS9461|CCDS55902|CCDS45059" P24530 "1659806|9556633" MGI:102720 RGD:2536 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/WS/home.php?select_db=EDNRB EDNRB 131244 121287 objectId:220 +HGNC:49045 EDNRB-AS1 EDNRB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q22.3 13q22.3 2013-08-15 2013-08-15 100505518 ENSG00000225579 OTTHUMG00000017113 BC031243 NR_103853 +HGNC:24640 EDRF1 erythroid differentiation regulatory factor 1 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 "DKFZp586F1019|FLJ21617" erythroid differentiation-related factor 1 C10orf137 chromosome 10 open reading frame 137 2004-05-12 2013-12-20 2013-12-20 2013-12-20 26098 ENSG00000107938 OTTHUMG00000019233 AL050102 NM_015608 "CCDS7646|CCDS55733" Q3B7T1 12609092 MGI:1919831 RGD:1306820 +HGNC:49501 EDRF1-AS1 EDRF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q26.2 10q26.2 2013-12-20 2016-10-05 101927983 ENSG00000236991 OTTHUMG00000189700 "AA868453|BX091673" XR_246200 +HGNC:3185 EEA1 early endosome antigen 1 protein-coding gene gene with protein product Approved 12q22 12q22 ZFYVE2 early endosome antigen 1, 162kD Zinc fingers FYVE-type 81 1998-12-23 2007-02-23 2014-11-19 8411 ENSG00000102189 OTTHUMG00000170110 uc001tck.4 L40157 NM_003566 CCDS31874 Q15075 "7768953|9697774" MGI:2442192 RGD:1310167 EEA1 605070 +HGNC:3186 EEC1 ectrodactyly, ectodermal dysplasia and cleft lip/palate syndrome 1 phenotype phenotype only Approved 7q11.2-q21.3 07q11.2-q21.3 EEC 1993-01-19 1998-05-27 1913 1424230 129900 +HGNC:3187 EEC2 ectrodactyly, ectodermal dysplasia and cleft lip/palate syndrome 2 phenotype phenotype only Approved 19 19 1998-05-27 2011-02-25 1914 9443880 +HGNC:3188 EED embryonic ectoderm development protein-coding gene gene with protein product Approved 11q14.2 11q14.2 "WAIT-1|HEED" WD protein associating with integrin cytoplasmic tails 1 WD repeat domain containing 362 1998-12-09 2016-10-05 8726 ENSG00000074266 OTTHUMG00000167209 uc001pbp.4 AF078933 NM_003797 "CCDS8273|CCDS76463|CCDS81612" O75530 "9765275|9806832" MGI:95286 RGD:1309782 EED 605984 objectId:2487 +HGNC:3189 EEF1A1 eukaryotic translation elongation factor 1 alpha 1 protein-coding gene gene with protein product Approved 6q13 06q13 EE1A1 "EF1A|EEF1A|LENG7" leukocyte receptor cluster (LRC) member 7 1991-03-11 2004-11-19 2016-10-05 1915 ENSG00000156508 OTTHUMG00000015031 uc063pot.1 BC019669 NM_001402 CCDS4980 P68104 "8812466|10941842" MGI:1096881 RGD:67387 EEF1A1 130590 +HGNC:3190 EEF1A1L14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3191 EEF1A1P1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 1 pseudogene pseudogene Approved 21q21.2 21q21.2 EEF1A1P eukaryotic translation elongation factor 1 alpha 1 pseudogene 2000-05-23 2009-11-25 2013-07-10 2016-10-05 54054 ENSG00000223822 OTTHUMG00000078248 NG_000926 PGOHUM00000239156 +HGNC:20008 EEF1A1P2 eukaryotic translation elongation factor 1 alpha 1 pseudogene 2 pseudogene pseudogene Approved 14q31.1 14q31.1 2003-01-13 2014-11-28 319112 ENSG00000258841 OTTHUMG00000171399 NG_002494 PGOHUM00000292739 +HGNC:3194 EEF1A1P3 eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 pseudogene pseudogene Approved 13q12.2 13q12.2 EEF1A1 (Eukaryotic translation elongation factor 1 alpha 1) pseudogene "EEF1AL|EEF1AL1" "eukaryotic translation elongation factor 1 alpha-like 1|eukaryotic translation elongation factor 1 alpha-like 1 pseudogene" 1992-09-18 2010-03-02 2010-03-02 2014-11-19 100421865 ENSG00000232587 OTTHUMG00000016644 NG_024908 8812466 PGOHUM00000248554 +HGNC:3199 EEF1A1P4 eukaryotic translation elongation factor 1 alpha 1 pseudogene 4 pseudogene pseudogene Approved 12p12.3 12p12.3 EEF1AL2 eukaryotic translation elongation factor 1 alpha-like 2 1995-08-15 2010-03-04 2010-03-04 2014-11-19 100421854 ENSG00000245205 OTTHUMG00000168909 NG_023989 8812466 PGOHUM00000239367 +HGNC:3200 EEF1A1P5 eukaryotic translation elongation factor 1 alpha 1 pseudogene 5 pseudogene pseudogene Approved 9q34.13 09q34.13 EEF1AL3 eukaryotic translation elongation factor 1 alpha-like 3 1995-08-15 2010-03-04 2010-03-04 2014-11-19 158078 ENSG00000196205 OTTHUMG00000020851 NG_002350 Q5VTE0 8812466 +HGNC:3201 EEF1A1P6 eukaryotic translation elongation factor 1 alpha 1 pseudogene 6 pseudogene pseudogene Approved 7p15.3 07p15.3 EEF1AL4 eukaryotic translation elongation factor 1 alpha-like 4 1995-08-15 2010-03-04 2010-03-04 2010-09-22 221838 ENSG00000233476 OTTHUMG00000152528 NG_002353 8812466 PGOHUM00000250855 +HGNC:3202 EEF1A1P7 eukaryotic translation elongation factor 1 alpha 1 pseudogene 7 pseudogene pseudogene Approved 19q13.12 19q13.12 EEF1AL5 "eukaryotic translation elongation factor 1 alpha-like 5|eukaryotic translation elongation factor 1 alpha-like 5 pseudogene" 1995-08-15 2010-03-04 2010-03-04 2016-07-25 390924 ENSG00000268222 OTTHUMG00000183302 NG_008815 8812466 PGOHUM00000295345 +HGNC:3203 EEF1A1P8 eukaryotic translation elongation factor 1 alpha 1 pseudogene 8 pseudogene pseudogene Approved 3q27.1 03q27.1 EEF1AL6 "eukaryotic translation elongation factor 1 alpha-like 6|eukaryotic translation elongation factor 1 alpha-like 6 pseudogene" 1995-08-15 2010-03-04 2010-03-04 2014-11-19 389179 ENSG00000223529 OTTHUMG00000156863 NG_006547 8812466 PGOHUM00000237893 +HGNC:3204 EEF1A1P9 eukaryotic translation elongation factor 1 alpha 1 pseudogene 9 pseudogene pseudogene Approved 4q24 04q24 EEF1AL7 eukaryotic translation elongation factor 1 alpha-like 7 1995-08-15 2010-03-04 2010-03-04 2014-11-28 441032 ENSG00000249264 OTTHUMG00000161040 NR_003586 8812466 PGOHUM00000300312 +HGNC:3205 EEF1A1P10 eukaryotic translation elongation factor 1 alpha 1 pseudogene 10 pseudogene pseudogene Approved 7q35 07q35 EEF1AL8 eukaryotic translation elongation factor 1 alpha-like 8 1995-08-15 2010-03-04 2010-03-04 2014-11-28 100421829 ENSG00000243746 OTTHUMG00000158061 NG_026523 8812466 PGOHUM00000302473 +HGNC:3206 EEF1A1P11 eukaryotic translation elongation factor 1 alpha 1 pseudogene 11 pseudogene pseudogene Approved 1p21.3 01p21.3 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene EEF1AL9 "eukaryotic translation elongation factor 1 alpha-like 9|eukaryotic translation elongation factor 1 alpha-like 9 pseudogene" 1995-08-15 2010-03-04 2010-03-04 2014-11-28 440595 ENSG00000228502 OTTHUMG00000010710 NG_008817 8812466 EEF1A1P11 PGOHUM00000296410 +HGNC:3195 EEF1A1P12 eukaryotic translation elongation factor 1 alpha 1 pseudogene 12 pseudogene pseudogene Approved 2q12.2 02q12.2 EEF1AL10 eukaryotic translation elongation factor 1 alpha-like 10 1995-08-15 2010-03-04 2010-03-04 2014-11-19 644604 ENSG00000214199 OTTHUMG00000153185 NG_016738 8812466 PGOHUM00000240238 +HGNC:3196 EEF1A1P13 eukaryotic translation elongation factor 1 alpha 1 pseudogene 13 pseudogene pseudogene Approved 5p15.2 05p15.2 EEF1AL11 eukaryotic translation elongation factor 1 alpha-like 11 1995-08-15 2010-03-04 2010-03-04 2013-04-24 133283 ENSG00000250182 OTTHUMG00000161826 NG_002349 "8812466|10343093" +HGNC:3197 EEF1A1P14 eukaryotic translation elongation factor 1 alpha 1 pseudogene 14 pseudogene pseudogene Approved 1q31.3 01q31.3 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene EEF1AL12 "eukaryotic translation elongation factor 1 alpha-like 12|eukaryotic translation elongation factor 1 alpha-like 12 pseudogene" 1995-08-15 2010-03-04 2010-03-04 2014-11-19 647167 ENSG00000233057 OTTHUMG00000035565 NG_008758 8812466 PGOHUM00000245137 +HGNC:3198 EEF1A1P15 eukaryotic translation elongation factor 1 alpha 1 pseudogene 15 pseudogene pseudogene Approved Xq21.33 Xq21.33 EEF1AL13 eukaryotic translation elongation factor 1 alpha-like 13 1995-08-15 2010-03-04 2010-03-04 2014-11-28 643563 ENSG00000213704 OTTHUMG00000021994 NG_016768 8812466 PGOHUM00000305205 +HGNC:37889 EEF1A1P16 eukaryotic translation elongation factor 1 alpha 1 pseudogene 16 pseudogene pseudogene Approved 12p12.3 12p12.3 2010-03-09 2014-11-28 387845 ENSG00000213235 OTTHUMG00000168859 NG_022950 PGOHUM00000291569 +HGNC:37890 EEF1A1P17 eukaryotic translation elongation factor 1 alpha 1 pseudogene 17 pseudogene pseudogene Approved 12q12 12q12 2010-03-09 2014-11-28 401717 ENSG00000257907 OTTHUMG00000169355 NG_022965 PGOHUM00000291633 +HGNC:37891 EEF1A1P18 eukaryotic translation elongation factor 1 alpha 1 pseudogene 18 pseudogene pseudogene Approved 11q13.1 11q13.1 2010-03-09 2014-11-19 100887747 NG_032766 PGOHUM00000242326 +HGNC:37892 EEF1A1P19 eukaryotic translation elongation factor 1 alpha 1 pseudogene 19 pseudogene pseudogene Approved 5p12 05p12 2010-03-09 2014-11-28 100421796 ENSG00000249855 OTTHUMG00000162225 NG_021847 PGOHUM00000300575 +HGNC:37893 EEF1A1P20 eukaryotic translation elongation factor 1 alpha 1 pseudogene 20 pseudogene pseudogene Approved 5q21.1 05q21.1 2010-03-09 2014-11-28 100421797 ENSG00000249963 OTTHUMG00000162803 NG_021893 PGOHUM00000301076 +HGNC:37894 EEF1A1P21 eukaryotic translation elongation factor 1 alpha 1 pseudogene 21 pseudogene pseudogene Approved 4p15.1 04p15.1 2010-03-09 2014-11-28 100421807 ENSG00000249542 OTTHUMG00000160342 NG_022054 PGOHUM00000300174 +HGNC:37895 EEF1A1P22 eukaryotic translation elongation factor 1 alpha 1 pseudogene 22 pseudogene pseudogene Approved 15q21.3 15q21.3 2010-03-09 2014-11-19 645693 ENSG00000259612 OTTHUMG00000172482 NG_022970 PGOHUM00000246786 +HGNC:37896 EEF1A1P23 eukaryotic translation elongation factor 1 alpha 1 pseudogene 23 pseudogene pseudogene Approved 3q29 03q29 2010-03-09 2014-11-28 100421815 NG_022235 PGOHUM00000299311 +HGNC:37897 EEF1A1P24 eukaryotic translation elongation factor 1 alpha 1 pseudogene 24 pseudogene pseudogene Approved 3p22.1 03p22.1 2010-03-09 2014-11-28 645715 ENSG00000223668 OTTHUMG00000156250 XR_017484 PGOHUM00000299407 +HGNC:37898 EEF1A1P25 eukaryotic translation elongation factor 1 alpha 1 pseudogene 25 pseudogene pseudogene Approved 3q22.3 03q22.3 2010-03-09 2014-11-28 646612 ENSG00000241429 OTTHUMG00000159887 NG_022276 PGOHUM00000299612 +HGNC:37899 EEF1A1P26 eukaryotic translation elongation factor 1 alpha 1 pseudogene 26 pseudogene pseudogene Approved 7p21.2 07p21.2 2010-03-09 2014-11-19 100128637 ENSG00000233167 OTTHUMG00000152411 NG_022551 PGOHUM00000233136 +HGNC:37900 EEF1A1P27 eukaryotic translation elongation factor 1 alpha 1 pseudogene 27 pseudogene pseudogene Approved 7p21.1 07p21.1 2010-03-09 2014-11-28 100130234 ENSG00000179460 OTTHUMG00000152499 NG_022552 PGOHUM00000302545 +HGNC:37902 EEF1A1P28 eukaryotic translation elongation factor 1 alpha 1 pseudogene 28 pseudogene pseudogene Approved 7q21.13 07q21.13 2010-03-09 2014-11-28 442709 ENSG00000237709 OTTHUMG00000154431 NG_009429 PGOHUM00000302841 +HGNC:37904 EEF1A1P29 eukaryotic translation elongation factor 1 alpha 1 pseudogene 29 pseudogene pseudogene Approved Xq21.2 Xq21.2 2010-03-09 2014-11-28 100130211 ENSG00000215093 OTTHUMG00000021941 NG_009085 PGOHUM00000304735 +HGNC:37906 EEF1A1P30 eukaryotic translation elongation factor 1 alpha 1 pseudogene 30 pseudogene pseudogene Approved Xq24 Xq24 2010-03-09 2014-11-28 402420 ENSG00000237757 OTTHUMG00000022294 NG_023023 PGOHUM00000304823 +HGNC:37908 EEF1A1P31 eukaryotic translation elongation factor 1 alpha 1 pseudogene 31 pseudogene pseudogene Approved Xq28 Xq28 2010-03-09 2014-11-19 553820 ENSG00000237859 OTTHUMG00000013503 NG_011403 PGOHUM00000241618 +HGNC:37909 EEF1A1P32 eukaryotic translation elongation factor 1 alpha 1 pseudogene 32 pseudogene pseudogene Approved 1q31.3 01q31.3 2010-03-09 2014-11-28 730232 ENSG00000213046 OTTHUMG00000035652 XR_016092. PGOHUM00000296712 +HGNC:37911 EEF1A1P33 eukaryotic translation elongation factor 1 alpha 1 pseudogene 33 pseudogene pseudogene Approved 12q23.1 12q23.1 2010-03-09 2014-11-19 390352 ENSG00000258846 OTTHUMG00000170603 NG_021698 PGOHUM00000239553 +HGNC:37912 EEF1A1P34 eukaryotic translation elongation factor 1 alpha 1 pseudogene 34 pseudogene pseudogene Approved 20p11.23 20p11.23 2010-03-09 2014-11-19 100132358 ENSG00000233324 OTTHUMG00000031987 NG_021977 PGOHUM00000247458 +HGNC:37913 EEF1A1P35 eukaryotic translation elongation factor 1 alpha 1 pseudogene 35 pseudogene pseudogene Approved 4q28.3 04q28.3 2010-03-09 2014-11-19 389223 NG_022081 PGOHUM00000246085 +HGNC:37914 EEF1A1P36 eukaryotic translation elongation factor 1 alpha 1 pseudogene 36 pseudogene pseudogene Approved 6q23.2 06q23.2 2010-03-09 2014-11-19 100421820 ENSG00000223912 OTTHUMG00000016340 NG_022371 PGOHUM00000243775 +HGNC:37915 EEF1A1P37 eukaryotic translation elongation factor 1 alpha 1 pseudogene 37 pseudogene pseudogene Approved 8q23.3 08q23.3 2010-03-10 2014-11-18 100421825 ENSG00000254124 OTTHUMG00000164914 NG_022431 PGOHUM00000249780 +HGNC:37916 EEF1A1P38 eukaryotic translation elongation factor 1 alpha 1 pseudogene 38 pseudogene pseudogene Approved 16p12.1 16p12.1 2010-03-10 2014-11-19 124199 ENSG00000261557 OTTHUMG00000177035 NG_022963 PGOHUM00000248770 +HGNC:37917 EEF1A1P39 eukaryotic translation elongation factor 1 alpha 1 pseudogene 39 pseudogene pseudogene Approved 10p11.23 10p11.23 2010-03-10 2014-11-28 100862850 ENSG00000230125 OTTHUMG00000017887 NG_032140 PGOHUM00000305843 +HGNC:37918 EEF1A1P40 eukaryotic translation elongation factor 1 alpha 1 pseudogene 40 pseudogene pseudogene Approved Xq22.3 Xq22.3 2010-03-10 2014-11-28 100874490 ENSG00000231144 OTTHUMG00000022157 NG_032199 PGOHUM00000305241 +HGNC:38799 EEF1A1P41 eukaryotic translation elongation factor 1 alpha 1 pseudogene 41 pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-08-05 2016-10-05 100874491 ENSG00000223600 OTTHUMG00000036158 NG_032218 PGOHUM00000305413 +HGNC:48927 EEF1A1P42 eukaryotic translation elongation factor 1 alpha 1 pseudogene 42 pseudogene pseudogene Approved 6p12.3 06p12.3 2013-07-10 2015-02-02 442215 ENSG00000277043 OTTHUMG00000014809 NG_022298 PGOHUM00000301368 +HGNC:3193 EEF1A1P43 eukaryotic translation elongation factor 1 alpha 1 pseudogene 43 pseudogene pseudogene Approved 17p11.2 17p11.2 EEF1A3 eukaryotic translation elongation factor 1 alpha 3 1998-02-11 2013-07-10 2013-07-10 2013-07-10 1918 NG_032985 11840190 +HGNC:3192 EEF1A2 eukaryotic translation elongation factor 1 alpha 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "EEF1AL|HS1" "STNL|STN" "statin-like|statin" 1995-08-15 2016-10-05 1917 ENSG00000101210 OTTHUMG00000033076 uc002yfe.3 AF163763 NM_001958 CCDS13522 Q05639 "8354261|8812466" MGI:1096317 RGD:3781 EEF1A2 602959 446538 +HGNC:27351 EEF1AKMT1 eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 N6AMT2 N-6 adenine-specific DNA methyltransferase 2 (putative) 2006-12-14 2016-01-11 2016-01-11 2016-01-11 221143 ENSG00000150456 OTTHUMG00000016519 uc009zzr.2 AK055408 NM_174928 CCDS9293 Q8WVE0 26545399 MGI:1915293 RGD:1306762 +HGNC:3208 EEF1B2 eukaryotic translation elongation factor 1 beta 2 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 1995-11-13 2015-09-11 1933 ENSG00000114942 OTTHUMG00000132891 uc002vbg.2 X60489 NM_001037663 CCDS2367 P24534 8250921 MGI:1929520 RGD:1311415 EEF1B2 600655 +HGNC:3207 EEF1B2P1 eukaryotic translation elongation factor 1 beta 2 pseudogene 1 pseudogene pseudogene Approved 15q21.2 15q21.2 EEF1B1 eukaryotic translation elongation factor 1 beta 1 1995-11-13 2011-05-26 2011-05-26 2014-11-28 1932 ENSG00000231169 OTTHUMG00000172676 X60656 NG_003045 11597139 PGOHUM00000293243 +HGNC:3209 EEF1B2P2 eukaryotic translation elongation factor 1 beta 2 pseudogene 2 pseudogene pseudogene Approved 5q13.1 05q13.1 "BETA-3|EEF-1BETA5A|EEF-1" "EEF1B|EEF1B3" eukaryotic translation elongation factor 1 beta 3 1991-03-11 2011-05-26 2011-05-26 2014-11-28 1934 ENSG00000213864 OTTHUMG00000164190 L26404 NG_003038 8250921 PGOHUM00000300608 +HGNC:3210 EEF1B2P3 eukaryotic translation elongation factor 1 beta 2 pseudogene 3 pseudogene pseudogene Approved Xp22.11 Xp22.11 EEF1B4 "eukaryotic translation elongation factor 1 beta 4|eukaryotic translation elongation factor 1 beta 4 (pseudogene)" 1995-11-13 2011-05-26 2011-05-26 2011-05-26 644820 ENSG00000232472 OTTHUMG00000021274 NG_008008 8250921 +HGNC:32475 EEF1B2P4 eukaryotic translation elongation factor 1 beta 2 pseudogene 4 pseudogene pseudogene Approved 12q23.3 12q23.3 2011-05-26 2011-05-26 2014-11-28 100130631 ENSG00000257119 OTTHUMG00000170035 NG_021699 PGOHUM00000291456 +HGNC:32476 EEF1B2P5 eukaryotic translation elongation factor 1 beta 2 pseudogene 5 pseudogene pseudogene Approved 6q12 06q12 2011-05-26 2014-11-28 442227 ENSG00000225121 OTTHUMG00000014947 NG_029026 PGOHUM00000301833 +HGNC:51453 EEF1B2P6 eukaryotic translation elongation factor 1 beta 2 pseudogene 6 pseudogene pseudogene Approved 7q32.3 07q32.3 2014-11-28 2014-11-28 647030 ENSG00000213261 OTTHUMG00000155056 NG_022904 PGOHUM00000302428 +HGNC:51454 EEF1B2P7 eukaryotic translation elongation factor 1 beta 2 pseudogene 7 pseudogene pseudogene Approved 2q37.1 02q37.1 2014-11-28 2014-11-28 100421756 ENSG00000213055 OTTHUMG00000153290 NG_023672 PGOHUM00000298353 +HGNC:51455 EEF1B2P8 eukaryotic translation elongation factor 1 beta 2 pseudogene 8 pseudogene pseudogene Approved 3q26.31 03q26.31 2014-11-28 2014-11-28 100421774 ENSG00000230497 OTTHUMG00000157119 NG_025661 PGOHUM00000299274 +HGNC:3211 EEF1D eukaryotic translation elongation factor 1 delta protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "EF-1D|FLJ20897" eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) 1994-05-16 2016-01-18 2016-10-05 1936 ENSG00000104529 OTTHUMG00000165191 uc064rak.1 AK024550 NM_032378 "CCDS6404|CCDS6405|CCDS47930|CCDS56559" P29692 8334168 MGI:1913906 RGD:621174 EEF1D 130592 +HGNC:32474 EEF1DP1 eukaryotic translation elongation factor 1 delta pseudogene 1 pseudogene pseudogene Approved 19p13.12 19p13.12 2007-07-18 2014-11-28 126037 ENSG00000228887 OTTHUMG00000181993 NG_006512 EEF1DP1 PGOHUM00000295214 +HGNC:33523 EEF1DP2 eukaryotic translation elongation factor 1 delta pseudogene 2 pseudogene pseudogene Approved 9q22.31 09q22.31 2007-07-18 2014-11-28 442429 ENSG00000226721 OTTHUMG00000020238 NG_006527 PGOHUM00000303989 +HGNC:30486 EEF1DP3 eukaryotic translation elongation factor 1 delta pseudogene 3 pseudogene pseudogene Approved 13q13.1 13q13.1 2007-07-18 2014-11-28 196549 ENSG00000229715 OTTHUMG00000016691 NR_027062 Q658K8 12477932 PGOHUM00000292123 +HGNC:22598 EEF1DP4 eukaryotic translation elongation factor 1 delta pseudogene 4 pseudogene pseudogene Approved 7q11.21 07q11.21 FLJ26697 2007-07-18 2014-11-28 442325 ENSG00000213640 OTTHUMG00000156600 NG_006526 PGOHUM00000302745 +HGNC:33524 EEF1DP5 eukaryotic translation elongation factor 1 delta pseudogene 5 pseudogene pseudogene Approved 6q22.33 06q22.33 2007-07-18 2014-11-28 442258 ENSG00000213130 OTTHUMG00000015541 NG_006525 PGOHUM00000301537 +HGNC:51456 EEF1DP6 eukaryotic translation elongation factor 1 delta pseudogene 6 pseudogene pseudogene Approved 1p36.32 01p36.32 2014-11-28 2014-11-28 644357 ENSG00000229280 OTTHUMG00000000732 NG_006533 PGOHUM00000295534 +HGNC:51457 EEF1DP7 eukaryotic translation elongation factor 1 delta pseudogene 7 pseudogene pseudogene Approved 17q23.3 17q23.3 2014-11-28 2014-11-28 100422656 ENSG00000263883 OTTHUMG00000178906 NG_026262 PGOHUM00000294515 +HGNC:51458 EEF1DP8 eukaryotic translation elongation factor 1 delta pseudogene 8 pseudogene pseudogene Approved 11q12.3 11q12.3 2014-11-28 2014-11-28 283236 ENSG00000236607 OTTHUMG00000167503 NG_006515 PGOHUM00000290994 +HGNC:3212 EEF1E1 eukaryotic translation elongation factor 1 epsilon 1 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 AIMP3 aminoacyl tRNA synthetase complex-interacting multifunctional protein 3 P18 1999-07-22 2015-09-11 9521 ENSG00000124802 OTTHUMG00000014221 uc003mxz.4 AF054186 NM_004280 "CCDS4507|CCDS47370" O43324 9653160 MGI:1913393 RGD:1311056 EEF1E1 609206 +HGNC:49187 EEF1E1-BLOC1S5 EEF1E1-BLOC1S5 readthrough (NMD candidate) other readthrough Approved 6p24.3 06p24.3 2013-09-25 2013-09-25 100526837 ENSG00000265818 OTTHUMG00000179299 NR_037618 +HGNC:51459 EEF1E1P1 eukaryotic translation elongation factor 1 epsilon 1 pseudogene 1 pseudogene pseudogene Approved 2q13 02q13 2014-11-28 2014-11-28 100130388 ENSG00000236307 OTTHUMG00000153261 NG_008760 PGOHUM00000298643 +HGNC:3213 EEF1G eukaryotic translation elongation factor 1 gamma protein-coding gene gene with protein product Approved 11q12.3 11q12.3 EF1G 1992-08-07 2015-09-11 1937 ENSG00000254772 OTTHUMG00000167567 uc001ntm.2 X63526 NM_001404 CCDS44626 P26641 "1598220|1461723" MGI:1914410 RGD:1302939 EEF1G 130593 +HGNC:44556 EEF1GP1 eukaryotic translation elongation factor 1 gamma pseudogene 1 pseudogene pseudogene Approved 7q31.33 07q31.33 2012-11-15 2014-11-28 646837 ENSG00000186676 OTTHUMG00000157167 NG_009408 PGOHUM00000302916 +HGNC:44557 EEF1GP2 eukaryotic translation elongation factor 1 gamma pseudogene 2 pseudogene pseudogene Approved 5q32 05q32 2012-11-15 2014-11-28 100130260 ENSG00000250346 OTTHUMG00000163421 NG_021900 PGOHUM00000301156 +HGNC:44558 EEF1GP3 eukaryotic translation elongation factor 1 gamma pseudogene 3 pseudogene pseudogene Approved 3p22.1 03p22.1 2012-11-15 2014-11-28 651628 ENSG00000226845 OTTHUMG00000156007 NG_022201 PGOHUM00000299007 +HGNC:44559 EEF1GP4 eukaryotic translation elongation factor 1 gamma pseudogene 4 pseudogene pseudogene Approved 3q26.1 03q26.1 2012-11-15 2014-11-28 100129403 ENSG00000240138 OTTHUMG00000159071 NG_022225 PGOHUM00000299253 +HGNC:44560 EEF1GP5 eukaryotic translation elongation factor 1 gamma pseudogene 5 pseudogene pseudogene Approved Xq23 Xq23 2012-11-15 2014-11-28 642357 ENSG00000234785 OTTHUMG00000022238 NG_022907 PGOHUM00000305265 +HGNC:44561 EEF1GP6 eukaryotic translation elongation factor 1 gamma pseudogene 6 pseudogene pseudogene Approved 6q16.1 06q16.1 2012-11-15 2014-11-28 100421733 ENSG00000216518 OTTHUMG00000015243 NG_025966 PGOHUM00000301893 +HGNC:44562 EEF1GP7 eukaryotic translation elongation factor 1 gamma pseudogene 7 pseudogene pseudogene Approved 1p32.3 01p32.3 2012-11-15 2014-11-28 645311 ENSG00000236290 OTTHUMG00000008321 NG_022779 PGOHUM00000296332 +HGNC:44563 EEF1GP8 eukaryotic translation elongation factor 1 gamma pseudogene 8 pseudogene pseudogene Approved 4q28.2 04q28.2 2012-11-15 2014-11-28 391698 ENSG00000234125 OTTHUMG00000161195 NG_022079 PGOHUM00000300374 +HGNC:3214 EEF2 eukaryotic translation elongation factor 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 EEF-2 polypeptidyl-tRNA translocase EF2 1991-03-11 2015-09-11 1938 ENSG00000167658 OTTHUMG00000181790 uc002lze.4 Z11692 NM_001961 CCDS12117 P13639 "2610926|6427766" MGI:95288 RGD:61979 EEF2 130610 370413 objectId:2756 +HGNC:24615 EEF2K eukaryotic elongation factor 2 kinase protein-coding gene gene with protein product Approved 16p12.2 16p12.2 eEF-2K 2004-07-05 2014-11-17 2016-10-05 29904 ENSG00000103319 OTTHUMG00000094771 uc002dki.4 U93850 NM_013302 CCDS10604 O00418 "9144159|12051769" MGI:1195261 RGD:2538 EEF2K 606968 objectId:2014 +HGNC:32221 EEF2KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "SB153|MGC19636" FAM86A family with sequence similarity 86, member A 2005-08-19 2014-11-17 2014-11-17 2014-11-19 196483 ENSG00000118894 OTTHUMG00000129527 BC010084 NM_201400 "CCDS10529|CCDS10530|CCDS73823" Q96G04 25231979 MGI:1917761 RGD:1304969 615263 +HGNC:24614 EEFSEC eukaryotic elongation factor, selenocysteine-tRNA specific protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "SELB|EFSEC|eEFSec" "elongation factor for selenoprotein translation|selenocysteine (Sec)-specific eukaryotic elongation factor" 2005-04-08 2016-05-23 2016-05-23 60678 ENSG00000132394 OTTHUMG00000159659 uc003eki.4 NM_021937 CCDS33849 P57772 "10970870|15229221" MGI:2137092 RGD:1560552 EEFSEC 607695 +HGNC:3215 EEGV1 electro-encephalographic variant pattern 1 phenotype phenotype only Approved 20q 20q 1991-06-07 2003-03-17 1940 1346390 130180 +HGNC:22223 EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding gene gene with protein product Approved 7p14.2 07p14.2 KIAA1706 2007-12-07 2007-12-07 2014-11-19 80820 ENSG00000122547 OTTHUMG00000154904 uc003tfa.4 AK027386 NM_030636 CCDS34619 Q7L9B9 MGI:1914734 RGD:1307401 EEPD1 +HGNC:25678 EFCAB1 EF-hand calcium binding domain 1 protein-coding gene gene with protein product Approved 8q11.21 08q11.21 FLJ11767 EF-hand domain containing 863 2005-07-25 2015-08-26 79645 ENSG00000034239 OTTHUMG00000164203 uc003xqo.3 NM_024593 "CCDS6145|CCDS47853" Q9HAE3 12477932 MGI:1914043 RGD:1594548 EFCAB1 +HGNC:28166 EFCAB2 EF-hand calcium binding domain 2 protein-coding gene gene with protein product Approved 1q44 01q44 "MGC12458|DRC8|CFAP200" dynein regulatory complex subunit 8 "EF-hand domain containing|Dynein regulatory complex" "863|981" 2005-07-25 2015-08-25 84288 ENSG00000203666 OTTHUMG00000040474 uc001ibc.3 AB209286 XM_017002538 "CCDS31082|CCDS44341" Q5VUJ9 23427265 MGI:1915476 RGD:1308593 EFCAB2 +HGNC:26379 EFCAB3 EF-hand calcium binding domain 3 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 FLJ25818 EF-hand domain containing 863 2006-02-13 2016-10-05 146779 ENSG00000172421 OTTHUMG00000179175 uc002izu.3 AK098684 NM_173503 "CCDS11632|CCDS45751" Q8N7B9 12477932 MGI:1918144 RGD:1305423 EFCAB3 +HGNC:24801 EFCAB5 EF-hand calcium binding domain 5 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 FLJ46247 EF-hand domain containing 863 2006-04-21 2015-08-04 374786 ENSG00000176927 OTTHUMG00000179743 uc002het.3 AL833911 NM_198529 "CCDS11254|CCDS54103" A4FU69 MGI:2442440 RGD:1309650 EFCAB5 +HGNC:24204 EFCAB6 EF-hand calcium binding domain 6 protein-coding gene gene with protein product Approved 22q13.2-q13.31 22q13.2-q13.31 "FLJ23588|DJBP|HSCBCIP1|KIAA1672|dJ185D5.1" EF-hand domain containing 863 2007-06-07 2016-10-11 64800 ENSG00000186976 OTTHUMG00000150522 uc003bdy.3 Z82201 NM_022785 "CCDS14049|CCDS14050" Q5THR3 "11258795|12612053" MGI:1924877 RGD:1309065 EFCAB6 +HGNC:39999 EFCAB6-AS1 EFCAB6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q13.2 22q13.2 CITF22-123F2.1 EFCAB6 antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100874197 ENSG00000223843 OTTHUMG00000150523 uc031rxy.2 NR_046563 +HGNC:29379 EFCAB7 EF-hand calcium binding domain 7 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "KIAA1799|RP4-534K7.1" EF-hand domain containing 863 2007-12-06 2014-11-19 84455 ENSG00000203965 OTTHUMG00000008983 uc001dbf.4 BC015814 NM_032437 CCDS30737 A8K855 11347906 MGI:2385199 RGD:1561825 EFCAB7 +HGNC:34532 EFCAB8 EF-hand calcium binding domain 8 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "WD repeat domain containing|EF-hand domain containing" "362|863" 2008-09-24 2014-11-18 388795 ENSG00000215529 OTTHUMG00000153693 uc061wfj.1 XM_371397 A8MWE9 MGI:3644206 RGD:1597364 EFCAB8 +HGNC:34530 EFCAB9 EF-hand calcium binding domain 9 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 EF-hand domain containing 863 2008-09-24 2013-01-10 285588 ENSG00000214360 OTTHUMG00000163271 uc021yhr.2 NM_001171183 CCDS54946 A8MZ26 MGI:1916556 RGD:1588807 EFCAB9 +HGNC:34531 EFCAB10 EF-hand calcium binding domain 10 other unknown Approved 7q22.3 07q22.3 EF-hand domain containing 863 2008-09-25 2016-10-05 100130771 ENSG00000185055 OTTHUMG00000157397 uc003vdc.5 BC105284 NR_027068 A6NFE3 MGI:1922290 RGD:1307943 EFCAB10 +HGNC:20357 EFCAB11 EF-hand calcium binding domain 11 protein-coding gene gene with protein product Approved 14q32.11 14q32.11 C14orf143 chromosome 14 open reading frame 143 EF-hand domain containing 863 2003-01-28 2011-01-31 2011-01-31 2014-11-18 90141 ENSG00000140025 OTTHUMG00000148671 uc001xxt.5 AK094740 NM_145231 "CCDS9887|CCDS61522|CCDS61523|CCDS61524|CCDS61525" Q9BUY7 MGI:1926017 RGD:1565006 EFCAB11 +HGNC:28061 EFCAB12 EF-hand calcium binding domain 12 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 C3orf25 chromosome 3 open reading frame 25 EF-hand domain containing 863 2005-11-15 2012-07-20 2012-07-20 2013-01-10 90288 ENSG00000172771 OTTHUMG00000159464 uc003emg.3 AK096099 NM_207307 CCDS54638 Q6NXP0 MGI:2681834 RGD:1586985 +HGNC:26864 EFCAB13 EF-hand calcium binding domain 13 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 FLJ40342 C17orf57 chromosome 17 open reading frame 57 EF-hand domain containing 863 2005-12-20 2012-07-20 2012-07-20 2015-08-27 124989 ENSG00000178852 OTTHUMG00000164767 uc002iln.4 BC036407 NM_152347 "CCDS11512|CCDS56034" Q8IY85 MGI:3651790 RGD:2318166 +HGNC:29051 EFCAB14 EF-hand calcium binding domain 14 protein-coding gene gene with protein product Approved 1p33 01p33 KIAA0494 KIAA0494 EF-hand domain containing 863 2005-07-29 2012-11-29 2012-11-29 2014-11-19 9813 ENSG00000159658 OTTHUMG00000007992 uc001cqk.4 AB007963 NM_014774 CCDS30706 O75071 9455484 MGI:2442397 RGD:1310351 +HGNC:44108 EFCAB14-AS1 EFCAB14 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p33 01p33 KIAA0494-AS1 "KIAA0494 antisense RNA 1 (non-protein coding)|KIAA0494 antisense RNA 1" 2012-06-22 2012-11-29 2012-11-29 2012-11-29 100130197 ENSG00000228237 OTTHUMG00000007993 uc021ond.2 BX113937 NR_038827 +HGNC:44648 EFCAB14P1 EF-hand calcium binding domain 14 pseudogene 1 pseudogene pseudogene Approved 1p34.3 01p34.3 2012-11-29 2012-11-29 106479047 ENSG00000228348 OTTHUMG00000004161 NG_044476 PGOHUM00000244668 +HGNC:25692 EFCC1 EF-hand and coiled-coil domain containing 1 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 FLJ12057 "C3orf73|CCDC48" "chromosome 3 open reading frame 73|coiled-coil domain containing 48" EF-hand domain containing 863 2005-12-19 2013-01-11 2013-01-11 2016-04-25 79825 ENSG00000114654 OTTHUMG00000158996 uc011bkt.2 AK022119 NM_024768 CCDS3054 Q9HA90 MGI:3611451 RGD:1596494 +HGNC:3218 EFEMP1 EGF containing fibulin like extracellular matrix protein 1 protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "S1-5|FBLN3|MTLV" fibulin 3 "DHRD|FBNL" "fibrillin-like|EGF-containing fibulin-like extracellular matrix protein 1" Fibulins 556 1996-04-30 2016-05-13 2016-10-05 2202 ENSG00000115380 OTTHUMG00000129343 uc002rzj.4 U03877 XM_005264205 CCDS1857 Q12805 "8812496|7799918" MGI:1339998 RGD:1308528 Mutations of the EGF-containing fibulin-like extracellular matrix protein 1|http://www.retina-international.org/files/sci-news/efempmut.htm EFEMP1 601548 121292 +HGNC:3219 EFEMP2 EGF containing fibulin like extracellular matrix protein 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "FBLN4|UPH1" fibulin 4 EGF-containing fibulin-like extracellular matrix protein 2 Fibulins 556 2000-03-01 2016-05-13 2016-10-05 30008 ENSG00000172638 OTTHUMG00000166664 uc001ofy.5 AF109121 NM_016938 CCDS8116 O95967 "10601734|10982184" MGI:1891209 RGD:1359496 EFEMP2 604633 121299 +HGNC:26330 EFHB EF-hand domain family member B protein-coding gene gene with protein product Approved 3p24.3 03p24.3 "FLJ25200|CFAP21" cilia and flagella associated protein 21 EF-hand domain family, member B EF-hand domain containing 863 2005-01-25 2015-11-18 2015-11-18 151651 ENSG00000163576 OTTHUMG00000150505 uc003cbl.5 AK122616 NM_144715 "CCDS33715|CCDS82744" Q8N7U6 12477932 MGI:3045296 RGD:1566407 EFHB +HGNC:16406 EFHC1 EF-hand domain containing 1 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 FLJ10466 myoclonin-1 "EJM1|EJM" "epilepsy, juvenile myoclonic 1|EF-hand domain (C-terminal) containing 1" EF-hand domain containing 863 2001-08-21 2016-04-06 2016-10-05 114327 ENSG00000096093 OTTHUMG00000014848 uc003pap.5 AK001328 NM_018100 "CCDS4942|CCDS55021" Q5JVL4 15258581 MGI:1919127 RGD:1587365 EFHC1 608815 121303 +HGNC:26233 EFHC2 EF-hand domain containing 2 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 FLJ22843 MRX74 "mental retardation, X-linked 74|EF-hand domain (C-terminal) containing 2" "X-linked mental retardation|EF-hand domain containing" "103|863" 2004-09-02 2016-04-06 2016-10-05 80258 ENSG00000183690 OTTHUMG00000021393 uc004dgb.5 AK026254 NM_025184 CCDS55405 Q5JST6 17221867 MGI:1921655 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=EFHC2 EFHC2 300817 +HGNC:29556 EFHD1 EF-hand domain family member D1 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 FLJ13612 swiprosin-2 EF hand domain containing 1 EF-hand domain containing 863 2004-01-29 2015-11-05 2015-11-05 80303 ENSG00000115468 OTTHUMG00000133263 uc002vtc.4 NM_025202 "CCDS2497|CCDS58755|CCDS82580" Q9BUP0 21244694 MGI:1921607 RGD:1559565 EFHD1 611617 +HGNC:28670 EFHD2 EF-hand domain family member D2 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 MGC4342 swiprosin-1 EF hand domain containing 2 EF-hand domain containing 863 2004-01-29 2015-11-05 2016-10-05 79180 ENSG00000142634 OTTHUMG00000002254 uc001awh.2 BC014923 NM_024329 CCDS155 Q96C19 21244694 MGI:106504 RGD:1307585 EFHD2 616450 +HGNC:25789 EFL1 elongation factor like GTPase 1 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "FLJ13119|FAM42A|HsT19294|RIA1" ribosome assembly 1 homolog (yeast) EFTUD1 elongation factor Tu GTP binding domain containing 1 2004-07-01 2016-01-05 2016-01-05 2016-01-05 79631 ENSG00000140598 OTTHUMG00000172573 uc002bgt.2 AK056656 NM_024580 "CCDS42070|CCDS42071" Q7Z2Z2 "14702039|21536732" MGI:2141969 RGD:1306521 +HGNC:3221 EFNA1 ephrin A1 protein-coding gene gene with protein product Approved 1q22 01q22 "LERK1|ECKLG" "TNFAIP4|EPLG1" ephrin-A1 Ephrins 546 1992-10-20 2016-04-05 2016-10-05 1942 ENSG00000169242 OTTHUMG00000035312 uc001fhh.4 NM_004428 "CCDS1091|CCDS1092" P20827 "2233719|8660976" MGI:103236 RGD:620388 EFNA1 191164 +HGNC:3222 EFNA2 ephrin A2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "ELF-1|LERK6" EPLG6 ephrin-A2 Ephrins 546 1995-05-10 2016-04-05 2016-10-05 1943 ENSG00000099617 OTTHUMG00000180148 uc002lry.3 NM_001405 CCDS12061 O43921 MGI:102707 RGD:620389 EFNA2 602756 +HGNC:3223 EFNA3 ephrin A3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "LERK3|Ehk1-L" EPLG3 ephrin-A3 Ephrins 546 1995-01-17 2016-04-05 2016-10-05 1944 ENSG00000143590 OTTHUMG00000035313 uc001fhf.3 BC017722 NM_004952 CCDS1090 P52797 8660976 MGI:106644 RGD:620390 EFNA3 601381 +HGNC:3224 EFNA4 ephrin A4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LERK4 EPLG4 ephrin-A4 Ephrins 546 1995-01-17 2016-04-05 2016-10-05 1945 ENSG00000243364 OTTHUMG00000035309 uc001fhd.4 AJ006352 NM_005227 "CCDS1089|CCDS41407|CCDS44237" P52798 8660976 MGI:106643 RGD:1307808 EFNA4 601380 +HGNC:3225 EFNA5 ephrin A5 protein-coding gene gene with protein product Approved 5q21.3 05q21.3 "AF1|LERK7" EPLG7 ephrin-A5 Ephrins 546 1995-05-10 2016-04-05 2016-10-05 1946 ENSG00000184349 OTTHUMG00000128741 uc003kol.3 U26403 NM_001962 CCDS4097 P52803 "8661153|9245480" MGI:107444 RGD:620391 EFNA5 601535 +HGNC:3226 EFNB1 ephrin B1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "LERK2|Elk-L" "EPLG2|CFNS" "craniofrontonasal syndrome (craniofrontonasal dysplasia)|ephrin-B1" Ephrins 546 1995-01-17 2016-04-05 2016-10-05 1947 ENSG00000090776 OTTHUMG00000021751 uc004dxd.5 U09303 NM_004429 CCDS14391 P98172 "7774950|16526919" MGI:102708 RGD:2540 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=EFNB1 EFNB1 300035 121305 +HGNC:3227 EFNB2 ephrin B2 protein-coding gene gene with protein product Approved 13q33.3 13q33.3 "LERK5|Htk-L|HTKL|MGC126226|MGC126227|MGC126228" "HTK ligand|ligand of eph-related kinase 5|eph-related receptor tyrosine kinase ligand 5" EPLG5 ephrin-B2 Ephrins 546 1995-01-17 2016-04-05 2016-10-05 1948 ENSG00000125266 OTTHUMG00000017324 uc001vqi.4 L38734 NM_004093 CCDS9507 P52799 7833926 MGI:105097 RGD:1309497 EFNB2 600527 +HGNC:3228 EFNB3 ephrin B3 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 LERK-8 EPLG8 ephrin-B3 Ephrins 546 1996-03-13 2016-04-05 2016-04-05 1949 ENSG00000108947 OTTHUMG00000108161 uc002gis.4 U57001 NM_001406 CCDS11120 Q15768 9126477 MGI:109196 RGD:2541 EFNB3 602297 +HGNC:28970 EFR3A EFR3 homolog A protein-coding gene gene with protein product Approved 8q24.22 08q24.22 KIAA0143 EFR3 homolog A (S. cerevisiae) 2007-11-14 2015-07-02 2015-08-27 23167 ENSG00000132294 OTTHUMG00000150552 uc003yte.4 D63477 NM_015137 "CCDS34942|CCDS83328" Q14156 15363888 MGI:1923990 RGD:1305976 EFR3A 611798 +HGNC:29155 EFR3B EFR3 homolog B protein-coding gene gene with protein product Approved 2p23.3 02p23.3 FLJ37871 KIAA0953 "KIAA0953|EFR3 homolog B (S. cerevisiae)" 2004-01-14 2007-11-14 2015-07-02 2016-10-05 22979 ENSG00000084710 OTTHUMG00000151988 uc010eyh.4 AB023170 NM_014971 "CCDS46231|CCDS82425" Q9Y2G0 10231032 MGI:2444851 RGD:1310845 EFR3B 616797 +HGNC:16898 EFS embryonal Fyn-associated substrate protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "EFS2|EFS1|HEFS|SIN|CASS3" Cas scaffolding protein family member 3 Cas scaffolding proteins 469 2003-01-29 2015-01-28 10278 ENSG00000100842 OTTHUMG00000028741 uc001wjo.5 AB001466 NM_005864 "CCDS9595|CCDS9596|CCDS61404" O43281 9349509 MGI:105311 RGD:1308966 EFS 609906 +HGNC:31739 EFTUD1P1 elongation factor Tu GTP binding domain containing 1 pseudogene 1 pseudogene pseudogene Approved 15q25.2 15q25.2 HsT19321 similar to hypothetical protein FLJ13119 FAM42B family with sequence similarity 42, member B 2004-06-29 2012-07-04 2012-07-04 2014-11-28 648809 ENSG00000259404 OTTHUMG00000172493 NR_036652 PGOHUM00000293326 +HGNC:44202 EFTUD1P2 elongation factor Tu GTP binding domain containing 1 pseudogene 2 pseudogene pseudogene Approved 4q13.1 04q13.1 2012-07-04 2014-11-28 100422019 ENSG00000248998 OTTHUMG00000160702 NG_025113 PGOHUM00000299849 +HGNC:30858 EFTUD2 elongation factor Tu GTP binding domain containing 2 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "U5-116KD|Snrp116|Snu114|SNRNP116" U5 snRNP specific protein, 116 kD 2005-07-26 2015-09-11 9343 ENSG00000108883 OTTHUMG00000179865 uc002ihn.3 D21163 NM_004247 "CCDS11489|CCDS45707|CCDS59295" Q15029 9233818 MGI:1336880 RGD:1560116 EFTUD2 603892 292410 +HGNC:3229 EGF epidermal growth factor protein-coding gene gene with protein product Approved 4q25 04q25 epidermal growth factor (beta-urogastrone) 2001-06-22 2010-05-11 2015-08-25 1950 ENSG00000138798 OTTHUMG00000132044 uc003hzy.5 X04571 XM_017007845 "CCDS3689|CCDS54794|CCDS54795" P01133 MGI:95290 RGD:2542 EGF 131530 201089 +HGNC:25149 EGFEM1P EGF like and EMI domain containing 1, pseudogene pseudogene pseudogene Approved 3q26.2 03q26.2 "C3orf50|NCRNA00259" "chromosome 3 open reading frame 50|non-protein coding RNA 259|EGF-like and EMI domain containing 1, pseudogene" 2006-01-16 2010-09-24 2016-01-21 2016-01-21 93556 ENSG00000206120 OTTHUMG00000154721 AF086185 NR_021485 Q0D2K5 12477932 MGI:1922990 +HGNC:3235 EGFL6 EGF like domain multiple 6 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 MAEG "MAM and EGF domain containing|EGF-like-domain, multiple 6" 2000-01-28 2016-01-21 2016-10-05 25975 ENSG00000198759 OTTHUMG00000021155 uc004cvi.4 AF186084 NM_015507 "CCDS14155|CCDS55370" Q8IUX8 10610727 MGI:1858599 RGD:1563321 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=EGFL6 EGFL6 300239 +HGNC:20594 EGFL7 EGF like domain multiple 7 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 ZNEU1 EGF-like-domain, multiple 7 2003-05-21 2016-01-21 2016-01-21 51162 ENSG00000172889 OTTHUMG00000020938 uc004cid.3 AF186111 NM_016215 CCDS7002 Q9UHF1 MGI:2449923 RGD:708507 EGFL7 608582 +HGNC:13944 EGFL8 EGF like domain multiple 8 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 NG3 C6orf8 "chromosome 6 open reading frame 8|EGF-like-domain, multiple 8" 2002-08-02 2003-05-23 2016-01-21 2016-10-05 80864 ENSG00000241404 OTTHUMG00000031222 uc011jqg.2 U89336 NM_030652 CCDS4743 Q99944 MGI:1932094 RGD:1549706 EGFL8 609897 +HGNC:26810 EGFLAM EGF like, fibronectin type III and laminin G domains protein-coding gene gene with protein product Approved 5p13.2-p13.1 05p13.2-p13.1 "FLJ39155|AGRINL|AGRNL|PIKA" "pikachurin|agrin-like" EGF-like, fibronectin type III and laminin G domains Fibronectin type III domain containing 555 2006-07-19 2016-01-21 2016-10-11 133584 ENSG00000164318 OTTHUMG00000131139 uc003jlb.3 AK097549 NM_152403 "CCDS3924|CCDS3925|CCDS47199|CCDS56363" Q63HQ2 "18641643|20078962|22760553" MGI:2146149 RGD:1306592 EGFLAM +HGNC:41169 EGFLAM-AS1 EGFLAM antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p13.1 05p13.1 EGFLAM antisense RNA 1 (non-protein coding) 2011-05-24 2012-08-15 2014-11-19 100874117 ENSG00000249491 OTTHUMG00000162101 uc063dcp.1 +HGNC:41168 EGFLAM-AS2 EGFLAM antisense RNA 2 non-coding RNA RNA, long non-coding Approved 5p13.2-p13.1 05p13.2-p13.1 EGFLAM antisense RNA 2 (non-protein coding) 2011-05-24 2012-08-15 2016-10-11 100506475 ENSG00000248572 OTTHUMG00000162115 uc031sjf.2 NR_102750 +HGNC:41167 EGFLAM-AS3 EGFLAM antisense RNA 3 non-coding RNA RNA, long non-coding Approved 5p13.2 05p13.2 EGFLAM antisense RNA 3 (non-protein coding) 2011-05-24 2012-08-15 2014-11-19 100874116 ENSG00000249071 OTTHUMG00000162108 uc063dcn.1 +HGNC:41166 EGFLAM-AS4 EGFLAM antisense RNA 4 non-coding RNA RNA, long non-coding Approved 5p13.2 05p13.2 EGFLAM antisense RNA 4 (non-protein coding) 2011-05-24 2012-08-15 2014-11-19 100852408 ENSG00000248730 OTTHUMG00000162114 uc031sje.2 BC014585 NR_046219 +HGNC:3236 EGFR epidermal growth factor receptor protein-coding gene gene with protein product Approved 7p11.2 07p11.2 ERBB1 "erythroblastic leukemia viral (v-erb-b) oncogene homolog (avian)|erb-b2 receptor tyrosine kinase 1" ERBB epidermal growth factor receptor (avian erythroblastic leukemia viral (v-erb-b) oncogene homolog) Erb-b2 receptor tyrosine kinases 1096 1986-01-01 2010-06-25 2016-10-12 1956 ENSG00000146648 OTTHUMG00000023661 uc003tqk.4 NM_005228 "CCDS5514|CCDS5515|CCDS5516|CCDS47587" P00533 1505215 MGI:95294 RGD:2543 LRG_304|http://www.lrg-sequence.org/LRG/LRG_304 EGFR 131550 121311 objectId:1797 +HGNC:40207 EGFR-AS1 EGFR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p11.2 07p11.2 Long non-coding RNAs 788 2012-11-06 2015-08-21 100507500 ENSG00000224057 OTTHUMG00000156126 uc003tqo.5 NR_047551 26271667 +HGNC:3237 EGI epilepsy, generalized, idiopathic phenotype phenotype only Approved 6p21.3 06p21.3 1991-11-21 2014-02-04 1957 1922810 600669 +HGNC:1232 EGLN1 egl-9 family hypoxia inducible factor 1 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "SM-20|PHD2|ZMYND6|HIFPH2" HIF prolyl hydroxylase 2 C1orf12 "EGL nine (C.elegans) homolog 1|egl nine homolog 1 (C. elegans)|egl-9 family hypoxia-inducible factor 1" Zinc fingers MYND-type 87 2000-06-16 2001-08-24 2016-04-05 2016-10-05 54583 ENSG00000135766 OTTHUMG00000038027 uc001huv.2 AJ310543 NM_022051 CCDS1595 Q9GZT9 11056053 MGI:1932286 RGD:631375 EGLN1 606425 171073 objectId:2833 +HGNC:44481 EGLN1P1 egl-9 family hypoxia inducible factor 1 pseudogene 1 pseudogene pseudogene Approved 15q25.2 15q25.2 egl nine homolog 1 pseudogene 1 2012-11-07 2016-05-03 2016-05-03 106660614 ENSG00000254779 OTTHUMG00000166918 NG_046711 22951037 PGOHUM00000247247 +HGNC:14660 EGLN2 egl-9 family hypoxia inducible factor 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "PHD1|HIFPH1" HIF prolyl hydroxylase 1 egl nine homolog 2 (C. elegans) 2001-08-21 2016-05-03 2016-05-03 112398 ENSG00000269858 OTTHUMG00000182703 uc002opg.5 AJ310544 NM_080732 CCDS12567 Q96KS0 MGI:1932287 RGD:631376 EGLN2 606424 objectId:2832 +HGNC:14661 EGLN3 egl-9 family hypoxia inducible factor 3 protein-coding gene gene with protein product Approved 14q13.1 14q13.1 "PHD3|HIFPH3" HIF prolyl hydroxylase 3 egl nine homolog 3 (C. elegans) 2001-08-21 2016-05-03 2016-10-05 112399 ENSG00000129521 OTTHUMG00000029498 uc001wsa.5 AJ310545 NM_022073 "CCDS9646|CCDS76671" Q9H6Z9 MGI:1932288 RGD:71019 EGLN3 606426 objectId:2834 +HGNC:49077 EGLN3-AS1 EGLN3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q13.1 14q13.1 2013-08-23 2013-08-23 105370445 ENSG00000258897 OTTHUMG00000170577 AA147919 XR_943736 +HGNC:49857 EGLN3P1 egl-9 family hypoxia-inducible factor 3 pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 2014-03-18 2014-03-18 100420503 ENSG00000256134 OTTHUMG00000168792 NG_023986 PGOHUM00000239360 +HGNC:37129 EGOT eosinophil granule ontogeny transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved 3p26.1 03p26.1 "EGO|NCRNA00190" "eosinophil granule ontogeny|non-protein coding RNA 190" Long non-coding RNAs 788 2009-07-28 2009-07-28 2014-10-22 100126791 ENSG00000235947 OTTHUMG00000156235 uc003bqd.4 BC039547 NR_004428 "17351112|22303364" 611662 EGO +HGNC:3238 EGR1 early growth response 1 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "TIS8|G0S30|NGFI-A|KROX-24|ZIF-268|AT225|ZNF225" "nerve growth factor-induced protein A|transcription factor ETR103|zinc finger protein 225|early growth response protein 1" Zinc fingers C2H2-type 28 1988-08-11 2016-10-05 1958 ENSG00000120738 OTTHUMG00000129197 uc003ldb.2 M62829 NM_001964 CCDS4206 P18146 3127059 MGI:95295 RGD:2544 EGR1 128990 +HGNC:3239 EGR2 early growth response 2 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 Krox-20 homolog, Drosophila KROX20 early growth response 2 (Krox-20 homolog, Drosophila) Zinc fingers C2H2-type 28 1988-08-31 2009-04-23 2016-10-12 1959 ENSG00000122877 OTTHUMG00000018308 uc009xph.4 BC035625 NM_000399 "CCDS7267|CCDS44409" P11161 MGI:95296 RGD:621608 "Mutation Database of Inherited Peripheral Neuropathies|http://www.molgen.ua.ac.be/CMTMutations|LRG_239|http://www.lrg-sequence.org/LRG/LRG_239" EGR2 129010 121314 +HGNC:3240 EGR3 early growth response 3 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 PILOT zinc finger protein pilot Zinc fingers C2H2-type 28 1992-07-08 2016-10-05 1960 ENSG00000179388 OTTHUMG00000097825 uc003xcm.2 X63741 NM_004430 "CCDS6033|CCDS56528" Q06889 "1906159|11909874" MGI:1306780 RGD:2545 EGR3 602419 +HGNC:3241 EGR4 early growth response 4 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 "NGFI-C|PAT133" Zinc fingers C2H2-type 28 1992-07-27 2016-10-05 1961 ENSG00000135625 OTTHUMG00000129774 uc061kqj.1 NM_001965 CCDS1925 Q05215 1584812 MGI:99252 RGD:2546 EGR4 128992 +HGNC:29144 EHBP1 EH domain binding protein 1 protein-coding gene gene with protein product Approved 2p15 02p15 "KIAA0903|NACSIN" 2004-08-26 2014-11-19 23301 ENSG00000115504 OTTHUMG00000129453 uc002sby.4 AL833968 NM_015252 "CCDS1872|CCDS46299|CCDS46300" Q8NDI1 10048485 MGI:2667252 RGD:1310604 EHBP1 609922 +HGNC:30682 EHBP1L1 EH domain binding protein 1 like 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "DKFZp762C186|TANGERIN" 2004-08-26 2015-11-10 2015-11-10 254102 ENSG00000173442 OTTHUMG00000166520 uc001oeo.5 AL834433 XM_170658 CCDS44649 Q8N3D4 MGI:3612340 RGD:1563823 EHBP1L1 +HGNC:3242 EHD1 EH domain containing 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "H-PAST|HPAST1|FLJ42622|FLJ44618" testilin PAST1 EF-hand domain containing 863 1999-08-11 2015-11-10 2016-10-05 10938 ENSG00000110047 OTTHUMG00000066832 uc001obu.3 AF099011 NM_006795 "CCDS8084|CCDS73315" Q9H4M9 "10395801|10673336" MGI:1341878 RGD:1309017 EHD1 605888 +HGNC:3243 EHD2 EH domain containing 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 PAST2 EF-hand domain containing 863 2000-03-22 2015-11-10 2016-10-05 30846 ENSG00000024422 OTTHUMG00000183266 uc002phj.5 AF181263 NM_014601 CCDS12704 Q9NZN4 10673336 MGI:2154274 RGD:1560856 EHD2 605890 +HGNC:3244 EHD3 EH domain containing 3 protein-coding gene gene with protein product Approved 2p23.1 02p23.1 PAST3 EF-hand domain containing 863 2000-03-22 2015-11-10 2016-10-05 30845 ENSG00000013016 OTTHUMG00000099365 uc002rnu.4 AF181264 NM_014600 CCDS1774 Q9NZN3 10673336 MGI:1928900 RGD:621762 EHD3 605891 +HGNC:3245 EHD4 EH domain containing 4 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 PAST4 EF-hand domain containing 863 2000-03-22 2015-11-10 2016-10-05 30844 ENSG00000103966 OTTHUMG00000130370 uc001zot.4 AF181265 NM_139265 CCDS10081 Q9H223 "10673336|11533061" MGI:1919619 RGD:628883 EHD4 605892 +HGNC:51418 EHD4-AS1 EHD4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q15.1 15q15.1 2014-11-21 2014-11-21 101928363 ENSG00000259883 OTTHUMG00000172723 "CF887666|CF891641" NR_120332 +HGNC:3246 EHF ETS homologous factor protein-coding gene gene with protein product Approved 11p13 11p13 "ESE3|ESEJ" "epithelium-specific ets factor 3|ESE3 transcription factor" ets homologous factor ETS transcription factor family 534 1999-02-17 2016-02-24 2016-02-24 26298 ENSG00000135373 OTTHUMG00000166454 uc001mvr.3 AF170583 NM_012153 "CCDS7894|CCDS55752|CCDS55753" Q9NZC4 10527851 MGI:1270840 RGD:1310282 EHF 605439 +HGNC:3247 EHHADH enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase protein-coding gene gene with protein product Approved 3q27.2 03q27.2 ECHD enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase 1993-06-25 2016-08-09 2016-10-05 1962 ENSG00000113790 OTTHUMG00000156698 uc003fpf.3 L07077 XM_017005839 "CCDS33901|CCDS54694" Q08426 8188243 MGI:1277964 RGD:621441 EHHADH 607037 159556 "4.2.1.17|1.1.1.35|5.3.3.8" +HGNC:44133 EHHADH-AS1 EHHADH antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.2 03q27.2 EHHADH antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 339926 ENSG00000223358 OTTHUMG00000156697 uc003fpe.3 BC047598 NR_038990 +HGNC:24650 EHMT1 euchromatic histone lysine methyltransferase 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "Eu-HMTase1|FLJ12879|KIAA1876|bA188C12.1|KMT1D" euchromatic histone methyltransferase 1 "Ankyrin repeat domain containing|Lysine methyltransferases" "403|487" 2004-06-01 2016-05-04 2016-05-04 79813 ENSG00000181090 OTTHUMG00000020995 uc011mfc.3 AY083210 NM_024757 "CCDS56595|CCDS7050" Q9H9B1 "11347906|12004135" MGI:1924933 RGD:1307588 EHMT1 607001 226051 objectId:2651 2.1.1.43 +HGNC:48714 EHMT1-IT1 EHMT1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 FLJ40292 2013-06-07 2013-06-07 643210 "AK127990|BX106199" NR_024341 +HGNC:14129 EHMT2 euchromatic histone lysine methyltransferase 2 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G9A|Em:AF134726.3|NG36/G9a|KMT1C" "C6orf30|BAT8" "chromosome 6 open reading frame 30|HLA-B associated transcript 8" "Ankyrin repeat domain containing|Lysine methyltransferases" "403|487" 2001-07-09 2005-06-09 2016-05-04 2016-10-05 10919 ENSG00000204371 OTTHUMG00000031180 uc011don.2 AF134726 NM_006709 "CCDS4725|CCDS4726|CCDS75425" Q96KQ7 "8457211|11316813" MGI:2148922 RGD:1302972 EHMT2 604599 objectId:2652 2.1.1.43 +HGNC:39751 EHMT2-AS1 EHMT2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 EHMT2 antisense RNA 1 (non-protein coding) 2011-04-21 2012-08-15 2012-10-12 106478954 ENSG00000237080 OTTHUMG00000057535 uc063nix.1 +HGNC:13276 EI24 EI24, autophagy associated transmembrane protein protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "PIG8|TP53I8|EPG4" ectopic P-granules autophagy protein 4 homolog (C. elegans) "etoposide induced 2.4 mRNA|etoposide induced 2.4" 2003-03-19 2016-02-24 2016-02-24 9538 ENSG00000149547 OTTHUMG00000165851 uc031yiu.2 AF010313 NM_004879 "CCDS73410|CCDS76493|CCDS81643" O14681 "10594026|9305847" MGI:108090 RGD:1309868 EI24 605170 +HGNC:44586 EI24P1 EI24, autophagy associated transmembrane protein pseudogene 1 pseudogene pseudogene Approved 3q26.32 03q26.32 etoposide induced 2.4 pseudogene 1 2012-11-19 2016-02-24 2016-02-24 100129423 ENSG00000236357 OTTHUMG00000157142 NG_030107 PGOHUM00000299278 +HGNC:44587 EI24P2 EI24, autophagy associated transmembrane protein pseudogene 2 pseudogene pseudogene Approved 1q23.1 01q23.1 etoposide induced 2.4 pseudogene 2 2012-11-19 2016-02-24 2016-02-24 100129866 ENSG00000236257 OTTHUMG00000017519 NG_022809 PGOHUM00000296596 +HGNC:44588 EI24P3 EI24, autophagy associated transmembrane protein pseudogene 3 pseudogene pseudogene Approved 3p21.31 03p21.31 etoposide induced 2.4 pseudogene 3 2012-11-19 2016-02-24 2016-02-24 100131881 ENSG00000214825 OTTHUMG00000156451 NG_022202 PGOHUM00000299014 +HGNC:44589 EI24P4 EI24, autophagy associated transmembrane protein pseudogene 4 pseudogene pseudogene Approved 7q35 07q35 etoposide induced 2.4 pseudogene 4 2012-11-19 2016-02-24 2016-02-24 100420072 ENSG00000236343 OTTHUMG00000152717 NG_026648 PGOHUM00000303001 +HGNC:44590 EI24P5 EI24, autophagy associated transmembrane protein pseudogene 5 pseudogene pseudogene Approved 8q11.23 08q11.23 etoposide induced 2.4 pseudogene 5 2012-11-19 2016-02-24 2016-02-24 100533660 NG_028885 PGOHUM00000303544 +HGNC:1191 EID1 EP300 interacting inhibitor of differentiation 1 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 EID-1 "C15orf3|CRI1" "CREBBP/EP300 inhibitory protein 1|CREBBP/EP300 inhibitor 1" 1999-10-22 2006-10-12 2006-10-12 2015-08-25 23741 ENSG00000255302 OTTHUMG00000165911 uc001zxc.2 AF092135 NM_014335 CCDS53941 Q9Y6B2 "10828624|11073990" MGI:1889651 RGD:1562702 EID1 605894 +HGNC:28292 EID2 EP300 interacting inhibitor of differentiation 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "EID-2|MGC20452" CRI2 "CREBBP/EP300 inhibitory protein 2|CREBBP/EP300 inhibitor 2" 2004-01-15 2006-10-12 2006-10-12 2014-11-19 163126 ENSG00000176396 OTTHUMG00000074073 uc002oma.5 BC030137 NM_153232 CCDS12540 Q8N6I1 14585496 MGI:2681174 RGD:1591322 EID2 609773 +HGNC:26796 EID2B EP300 interacting inhibitor of differentiation 2B protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "EID-3|FLJ38944" 2006-10-12 2015-08-25 126272 ENSG00000176401 OTTHUMG00000183068 uc002olz.1 AK096263 NM_152361 CCDS12539 Q96D98 15970276 MGI:1924095 RGD:9381183 EID2B +HGNC:32961 EID3 EP300 interacting inhibitor of differentiation 3 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "FLJ25832|NSMCE4B|NSE4B" 2006-10-12 2006-11-24 493861 ENSG00000255150 OTTHUMG00000165912 uc001tkw.4 BC027612 NM_001008394 CCDS53822 Q8N140 "15987788|15752197" MGI:1913591 RGD:1597206 EID3 612986 +HGNC:3249 EIF1 eukaryotic translation initiation factor 1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "EIF-1|ISO1|A121|SUI1|EIF1A" 1991-03-04 2015-09-11 10209 ENSG00000173812 OTTHUMG00000133492 uc002hxj.4 AF083441 NM_005801 CCDS11403 P41567 "7904817|10347211" MGI:105125 RGD:1306308 EIF1 +HGNC:28147 EIF1AD eukaryotic translation initiation factor 1A domain containing protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "MGC11102|haponin" 2007-11-26 2014-11-19 84285 ENSG00000175376 OTTHUMG00000166671 uc001ogm.3 AK094129 NM_032325 CCDS8124 Q8N9N8 12477932 MGI:1917110 RGD:1304686 EIF1AD +HGNC:3250 EIF1AX eukaryotic translation initiation factor 1A, X-linked protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 "eIF-1A|eIF-4C" "EIF4C|EIF1A" eukaryotic translation initiation factor 1A, X chromosome 1991-03-04 2004-05-26 2002-11-28 2016-10-05 1964 ENSG00000173674 OTTHUMG00000022704 uc004czt.4 L18960 NM_001412 CCDS14196 P47813 "8106356|9381176" MGI:1913485 RGD:1560198 EIF1AX 300186 422208 +HGNC:40208 EIF1AX-AS1 EIF1AX antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.12 Xp22.12 EIF1AX antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100874078 ENSG00000225037 OTTHUMG00000021229 uc033dsh.2 NR_046592 +HGNC:19900 EIF1AXP1 eukaryotic translation initiation factor 1A, X-linked pseudogene 1 pseudogene pseudogene Approved 1p36.13 01p36.13 EIF1AP1 eukaryotic translation initiation factor 1A pseudogene 1 2002-11-29 2009-12-02 2009-12-02 2012-08-08 280661 ENSG00000236698 OTTHUMG00000002579 AL021920 NG_002419 +HGNC:44295 EIF1AXP2 eukaryotic translation initiation factor 1A, X-linked pseudogene 2 pseudogene pseudogene Approved 14q23.3 14q23.3 2012-08-08 2012-08-08 106479036 ENSG00000258980 OTTHUMG00000171171 NG_044391 PGOHUM00000247832 +HGNC:3252 EIF1AY eukaryotic translation initiation factor 1A, Y-linked protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 eukaryotic translation initiation factor 1A, Y chromosome 1999-04-23 2003-09-12 2015-08-27 9086 ENSG00000198692 OTTHUMG00000036544 uc004fuk.5 AF000987 NM_004681 "CCDS14795|CCDS65368" O14602 9381176 MGI:1913485 RGD:1306331 EIF1AY 400014 +HGNC:30792 EIF1B eukaryotic translation initiation factor 1B protein-coding gene gene with protein product Approved 3p22.1 03p22.1 GC20 2006-02-02 2015-09-11 10289 ENSG00000114784 OTTHUMG00000131388 uc003ckc.5 BC006996 NM_005875 CCDS2690 O60739 7904817 MGI:1916219 RGD:1309241 EIF1B +HGNC:44555 EIF1B-AS1 EIF1B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.1 03p22.1 FLJ33065 2012-11-15 2012-11-15 440952 ENSG00000280739 OTTHUMG00000189530 uc003ckb.4 "AK309874|BC045736" NR_033965 +HGNC:49614 EIF1P1 eukaryotic translation initiation factor 1 pseudogene 1 pseudogene pseudogene Approved 9p24.3 09p24.3 2014-01-24 2014-01-24 100505855 ENSG00000229875 OTTHUMG00000019432 NG_030090 PGOHUM00000236353 +HGNC:49615 EIF1P2 eukaryotic translation initiation factor 1 pseudogene 2 pseudogene pseudogene Approved 1p34.3 01p34.3 2014-01-24 2014-01-24 100288425 ENSG00000235549 OTTHUMG00000007495 NG_030194 PGOHUM00000243973 +HGNC:49616 EIF1P3 eukaryotic translation initiation factor 1 pseudogene 3 pseudogene pseudogene Approved 1q25.3 01q25.3 2014-01-24 2014-01-24 730144 ENSG00000231684 OTTHUMG00000037404 NG_027543 PGOHUM00000245114 +HGNC:49617 EIF1P4 eukaryotic translation initiation factor 1 pseudogene 4 pseudogene pseudogene Approved 16p13.3 16p13.3 2014-01-24 2014-01-24 100130566 ENSG00000262154 OTTHUMG00000177361 NG_030244 PGOHUM00000263399 +HGNC:49618 EIF1P5 eukaryotic translation initiation factor 1 pseudogene 5 pseudogene pseudogene Approved 17p11.2 17p11.2 2014-01-24 2014-01-24 106481690 ENSG00000266563 OTTHUMG00000178972 NG_043125 PGOHUM00000263414 +HGNC:49619 EIF1P6 eukaryotic translation initiation factor 1 pseudogene 6 pseudogene pseudogene Approved 19p13.3 19p13.3 2014-01-24 2014-01-24 106480277 ENSG00000267938 OTTHUMG00000181916 NG_045130 PGOHUM00000234120 +HGNC:49620 EIF1P7 eukaryotic translation initiation factor 1 pseudogene 7 pseudogene pseudogene Approved 2p25.1 02p25.1 2014-01-24 2014-01-24 106481691 ENSG00000213772 OTTHUMG00000159105 NG_045021 PGOHUM00000263480 +HGNC:3254 EIF2A eukaryotic translation initiation factor 2A protein-coding gene gene with protein product Approved 3q25.1 03q25.1 EIF-2A eukaryotic translation initiation factor 2A, 65kDa 1991-03-04 2015-11-09 2015-11-09 83939 ENSG00000144895 OTTHUMG00000159775 uc003eya.4 AF212241 NM_032025 "CCDS46935|CCDS82859|CCDS82860|CCDS82861" Q9BY44 "12133843|1620067" MGI:1098684 RGD:1589591 EIF2A 609234 +HGNC:24921 EIF2AK1 eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "HRI|KIAA1369" heme regulated initiation factor 2 alpha kinase 2005-01-19 2015-11-27 2016-10-05 27102 ENSG00000086232 OTTHUMG00000090689 uc003spp.4 BC006524 NM_014413 CCDS5345 Q9BQI3 "7709427|10718198" MGI:1353448 RGD:70883 EIF2AK1 613635 objectId:2015 +HGNC:9437 EIF2AK2 eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "PKR|EIF2AK1|PPP1R83" protein phosphatase 1, regulatory subunit 83 PRKR protein kinase, interferon-inducible double stranded RNA dependent Protein phosphatase 1 regulatory subunits 694 1992-12-04 2005-01-19 2015-11-27 2016-10-05 5610 ENSG00000055332 OTTHUMG00000100962 uc010fac.4 BC057805 NM_002759 "CCDS1786|CCDS46259" P19525 1351683 MGI:1353449 RGD:3402 EIF2AK2 176871 objectId:2016 +HGNC:3255 EIF2AK3 eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "PEK|PERK" 1999-06-14 2015-11-27 2016-10-12 9451 ENSG00000172071 OTTHUMG00000155046 uc002stc.5 AF110146 NM_004836 "CCDS33241|CCDS82481" Q9NZJ5 "10026192|10575235" MGI:1341830 RGD:70884 LRG_1024|http://www.lrg-sequence.org/LRG/LRG_1024 EIF2AK3 604032 121317 objectId:2017 +HGNC:19687 EIF2AK4 eukaryotic translation initiation factor 2 alpha kinase 4 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "GCN2|KIAA1338" 2002-11-11 2016-10-05 440275 ENSG00000128829 OTTHUMG00000172403 uc001zkm.2 AB037759 XM_005254392 CCDS42016 Q9P2K8 10504407 MGI:1353427 RGD:1311439 EIF2AK4 609280 391627 objectId:2018 +HGNC:39495 EIF2AP1 eukaryotic translation initiation factor 2A pseudogene 1 pseudogene pseudogene Approved 7q36.1 07q36.1 2011-01-20 2014-11-19 100874393 NG_032308 PGOHUM00000233074 +HGNC:39496 EIF2AP2 eukaryotic translation initiation factor 2A pseudogene 2 pseudogene pseudogene Approved 7q36.1 07q36.1 2011-01-20 2014-11-19 100874394 NG_032309 PGOHUM00000233077 +HGNC:39497 EIF2AP3 eukaryotic translation initiation factor 2A pseudogene 3 pseudogene pseudogene Approved 7q36.1 07q36.1 2011-01-20 2011-01-20 100874395 NG_032310 PGOHUM00000233079 +HGNC:39498 EIF2AP4 eukaryotic translation initiation factor 2A pseudogene 4 pseudogene pseudogene Approved 10q11.21 10q11.21 2011-01-20 2014-11-18 100874401 ENSG00000227395 OTTHUMG00000018059 NG_032311 PGOHUM00000238759 +HGNC:3257 EIF2B1 eukaryotic translation initiation factor 2B subunit alpha protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "EIF-2Balpha|EIF-2B|EIF2BA" EIF2B "eukaryotic translation initiation factor 2B, subunit 1 (alpha, 26kD)|eukaryotic translation initiation factor 2B, subunit 1 alpha, 26kDa" 1991-03-04 2015-11-16 2016-10-05 1967 ENSG00000111361 OTTHUMG00000168696 uc001ufm.4 X95648 NM_001414 CCDS31924 Q14232 MGI:2384802 RGD:620819 EIF2B1 606686 121320 +HGNC:3258 EIF2B2 eukaryotic translation initiation factor 2B subunit beta protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "EIF2B|EIF-2Bbeta" "eukaryotic translation initiation factor 2B, subunit 2 (beta, 39kD)|eukaryotic translation initiation factor 2B, subunit 2 beta, 39kDa" 1998-10-16 2015-11-16 2015-11-16 8892 ENSG00000119718 OTTHUMG00000171764 uc001xrc.3 NM_014239 CCDS9836 P49770 8887689 MGI:2145118 RGD:620820 EIF2B2 606454 121326 +HGNC:3259 EIF2B3 eukaryotic translation initiation factor 2B subunit gamma protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "EIF2Bgamma|EIF-2B" "eukaryotic translation initiation factor 2B, subunit 3 (gamma, 58kD)|eukaryotic translation initiation factor 2B, subunit 3 gamma, 58kDa" 1998-10-16 2015-11-16 2015-11-16 8891 ENSG00000070785 OTTHUMG00000008585 uc001cmt.4 AF257077 NM_020365 "CCDS517|CCDS53313|CCDS72775" Q9NR50 10900014 MGI:1313286 RGD:620821 EIF2B3 606273 121330 +HGNC:3260 EIF2B4 eukaryotic translation initiation factor 2B subunit delta protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "EIF2Bdelta|EIF-2B|DKFZP586J0119|EIF2B" "eukaryotic translation initiation factor 2B, subunit 4 (delta, 67kD)|eukaryotic translation initiation factor 2B, subunit 4 delta, 67kDa" 1998-10-16 2015-11-16 2015-11-16 8890 ENSG00000115211 OTTHUMG00000151927 uc002rkb.4 AJ011306 XM_011533147 "CCDS33164|CCDS46244|CCDS46245|CCDS82432" Q9UI10 "8929216|7982969" MGI:95300 RGD:620208 EIF2B4 606687 121334 +HGNC:3261 EIF2B5 eukaryotic translation initiation factor 2B subunit epsilon protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "EIF2Bepsilon|EIF-2B" "eukaryotic translation initiation factor 2B, subunit 5 (epsilon, 82kD)|eukaryotic translation initiation factor 2B, subunit 5 epsilon, 82kDa" 1998-10-16 2015-11-16 2016-10-05 8893 ENSG00000145191 OTTHUMG00000156840 uc003fmp.4 U23028 XR_001740352 CCDS3252 Q13144 8688466 MGI:2446176 RGD:708380 EIF2B5 603945 121340 +HGNC:40209 EIF2B5-AS1 EIF2B5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.1 03q27.1 EIF2B5 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874079 ENSG00000230215 OTTHUMG00000156713 uc062qwv.1 NR_046593 +HGNC:41330 EIF2B5-IT1 EIF2B5 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3q27.1 03q27.1 EIF2B5 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874328 ENSG00000227509 OTTHUMG00000156714 uc062qwu.1 +HGNC:6583 EIF2D eukaryotic translation initiation factor 2D protein-coding gene gene with protein product Approved 1q32.1 01q32.1 LGTN 1996-07-22 2011-01-19 2011-01-19 2014-11-19 1939 ENSG00000143486 OTTHUMG00000184619 uc001heh.4 BC001585 NM_006893 "CCDS1465|CCDS55680" P41214 20566627 MGI:109342 RGD:1561765 EIF2D 613709 +HGNC:3265 EIF2S1 eukaryotic translation initiation factor 2 subunit alpha protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "EIF-2alpha|EIF2A" EIF2 "eukaryotic translation initiation factor 2, subunit 1 (alpha, 35kD )|eukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa" 1991-03-04 2015-11-16 2016-10-05 1965 ENSG00000134001 OTTHUMG00000029800 uc001xjg.4 J02645 NM_004094 CCDS9781 P05198 2948954 MGI:95299 RGD:620963 EIF2S1 603907 +HGNC:3266 EIF2S2 eukaryotic translation initiation factor 2 subunit beta protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "EIF2beta|PPP1R67" protein phosphatase 1, regulatory subunit 67 EIF2 "eukaryotic translation initiation factor 2, subunit 2 (beta, 38kD )|eukaryotic translation initiation factor 2, subunit 2 beta, 38kDa" Protein phosphatase 1 regulatory subunits 694 1998-10-16 2015-11-16 2016-10-05 8894 ENSG00000125977 OTTHUMG00000032287 uc002xaf.4 M29536 NM_003908 CCDS13231 P20042 3044606 MGI:1914454 RGD:735192 EIF2S2 603908 +HGNC:20009 EIF2S2P1 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 1 pseudogene pseudogene Approved 14q23.2 14q23.2 EIF2S2P "eukaryotic translation initiation factor 2, subunit 2 beta, pseudogene|eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 1" 2003-01-13 2009-11-25 2015-12-16 2015-12-16 319115 NG_002496 PGOHUM00000248200 +HGNC:24654 EIF2S2P2 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 2 pseudogene pseudogene Approved 3q27.2 03q27.2 bcm2636 eukaryotic translation initiation factor 2 beta-like pseudogene eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 2 2004-06-28 2015-12-16 2015-12-16 347673 ENSG00000229704 OTTHUMG00000156699 NG_002696 PGOHUM00000237895 +HGNC:31664 EIF2S2P3 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 3 pseudogene pseudogene Approved 10q23.33 10q23.33 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 3 2004-05-27 2015-12-16 2015-12-16 283014 ENSG00000236493 OTTHUMG00000018763 NG_005657 PGOHUM00000238585 +HGNC:37626 EIF2S2P4 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 4 pseudogene pseudogene Approved 2q31.1 02q31.1 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 4 2009-11-25 2015-12-16 2015-12-16 728350 ENSG00000128692 OTTHUMG00000154071 NG_005660.3 +HGNC:37793 EIF2S2P5 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 5 pseudogene pseudogene Approved 1p13.2 01p13.2 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 5 2010-02-24 2015-12-16 2016-10-05 347675 ENSG00000225650 OTTHUMG00000011896 NG_002698 PGOHUM00000244859 +HGNC:37794 EIF2S2P6 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 6 pseudogene pseudogene Approved 11q14.1 11q14.1 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 6 2010-02-24 2015-12-16 2015-12-16 100129629 NG_022982 PGOHUM00000242822 +HGNC:37795 EIF2S2P7 eukaryotic translation initiation factor 2 subunit 2 beta pseudogene 7 pseudogene pseudogene Approved 2p16.1 02p16.1 eukaryotic translation initiation factor 2, subunit 2 beta pseudogene 7 2010-02-24 2015-12-16 2015-12-16 647016 NG_021500 PGOHUM00000240049 +HGNC:3267 EIF2S3 eukaryotic translation initiation factor 2 subunit gamma protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "EIF2gamma|EIF2" eukaryotic translation initiation factor 2G EIF2G "eukaryotic translation initiation factor 2, subunit 3 (gamma, 52kD)|eukaryotic translation initiation factor 2, subunit 3 gamma, 52kDa" 1994-09-06 2015-11-16 2016-10-05 1968 ENSG00000130741 OTTHUMG00000021262 uc004dbc.5 L19161 NM_001415 CCDS14210 P41091 "8106381|9736774" MGI:1349431 RGD:1561279 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=EIF2S3 EIF2S3 300161 +HGNC:3271 EIF3A eukaryotic translation initiation factor 3 subunit A protein-coding gene gene with protein product Approved 10q26.11 10q26.11 "eIF3-theta|eIF3-p170|KIAA0139|eIF3a|TIF32" "EIF3|EIF3S10" "eukaryotic translation initiation factor 3, subunit 10 theta, 150/170kDa|eukaryotic translation initiation factor 3, subunit A" Eukaryotic translation initiation factor 3 1121 1998-11-26 2007-07-27 2015-12-04 2015-12-04 8661 ENSG00000107581 OTTHUMG00000019144 uc001ldu.4 U78311 NM_003750 CCDS7608 Q14152 "9054404|8590280" MGI:95301 RGD:1307269 EIF3A 602039 +HGNC:3280 EIF3B eukaryotic translation initiation factor 3 subunit B protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "PRT1|eIF3b" EIF3S9 "eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa|eukaryotic translation initiation factor 3, subunit B" "RNA binding motif containing|Eukaryotic translation initiation factor 3" "725|1121" 1998-11-26 2007-07-27 2015-12-04 2016-10-05 8662 ENSG00000106263 OTTHUMG00000022839 uc003sly.4 U62583 XM_017012752 CCDS5332 P55884 8995410 MGI:106478 RGD:1309018 EIF3B 603917 +HGNC:3279 EIF3C eukaryotic translation initiation factor 3 subunit C protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "eIF3-p110|eIF3c" EIF3S8 "eukaryotic translation initiation factor 3, subunit 8, 110kDa|eukaryotic translation initiation factor 3, subunit C" Eukaryotic translation initiation factor 3 1121 1998-11-26 2007-07-27 2015-12-04 2015-12-04 8663 ENSG00000184110 OTTHUMG00000099443 uc010byi.4 U46025 NM_003752 "CCDS10638|CCDS66993" Q99613 8995409 MGI:1926966 RGD:1308871 EIF3C 603916 +HGNC:26347 EIF3CL eukaryotic translation initiation factor 3 subunit C-like protein-coding gene gene with protein product Approved 16p12.1 16p12.1 eukaryotic translation initiation factor 3, subunit C-like 2007-08-02 2015-12-04 2016-10-05 728689 ENSG00000205609 OTTHUMG00000097025 uc002dpi.6 XM_017023620 CCDS42136 B5ME19 EIF3CL +HGNC:3278 EIF3D eukaryotic translation initiation factor 3 subunit D protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "eIF3-p66|eIF3-zeta|eIF3d" EIF3S7 "eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa|eukaryotic translation initiation factor 3, subunit D" Eukaryotic translation initiation factor 3 1121 1998-11-26 2007-07-27 2015-12-04 2016-10-05 8664 ENSG00000100353 OTTHUMG00000150599 uc003apr.4 U54558 XR_937944 CCDS13930 O15371 9341143 MGI:1933181 RGD:1303255 EIF3D 603915 +HGNC:3277 EIF3E eukaryotic translation initiation factor 3 subunit E protein-coding gene gene with protein product Approved 8q23.1 08q23.1 "eIF3-p48|eIF3e" "INT6|EIF3S6" "eukaryotic translation initiation factor 3, subunit 6 48kDa|eukaryotic translation initiation factor 3, subunit E" Eukaryotic translation initiation factor 3 1121 1997-07-11 2007-07-27 2015-12-04 2016-10-05 3646 ENSG00000104408 OTTHUMG00000164858 uc064pmy.1 U94175 NM_001568 CCDS6308 P60228 "9403073|9295280" MGI:99257 RGD:9273439 EIF3E 602210 +HGNC:6102 EIF3EP1 eukaryotic translation initiation factor 3 subunit E pseudogene 1 pseudogene pseudogene Approved 6q13 06q13 "INT6P1|EIF3S6P1|EIF3EP" "murine mammary tumor integration site 6 (oncogene homolog) pseudogene 1|eukaryotic translation initiation factor 3, subunit 6 48kDa pseudogene 1|eukaryotic translation initiation factor 3, subunit E pseudogene|eukaryotic translation initiation factor 3, subunit E pseudogene 1" 1997-07-11 2010-03-10 2015-12-04 2015-12-04 3647 ENSG00000234882 OTTHUMG00000015029 NG_001023 9403073 PGOHUM00000257154 +HGNC:37919 EIF3EP2 eukaryotic translation initiation factor 3 subunit E pseudogene 2 pseudogene pseudogene Approved 2q24.2 02q24.2 eukaryotic translation initiation factor 3, subunit E pseudogene 2 2010-03-10 2015-12-04 2015-12-04 100132597 ENSG00000224674 OTTHUMG00000154397 NG_023025 +HGNC:37920 EIF3EP3 eukaryotic translation initiation factor 3 subunit E pseudogene 3 pseudogene pseudogene Approved 2q24.3 02q24.3 eukaryotic translation initiation factor 3, subunit E pseudogene 3 2010-03-10 2015-12-04 2015-12-04 100462836 NG_021590 PGOHUM00000241007 +HGNC:37921 EIF3EP4 eukaryotic translation initiation factor 3 subunit E pseudogene 4 pseudogene pseudogene Approved 3q26.33 03q26.33 eukaryotic translation initiation factor 3, subunit E pseudogene 4 2010-03-10 2015-12-04 2015-12-04 100422200 NG_022232 PGOHUM00000237888 +HGNC:3275 EIF3F eukaryotic translation initiation factor 3 subunit F protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "eIF3-epsilon|eIF3-p47|eIF3f" EIF3S5 "eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa|eukaryotic translation initiation factor 3, subunit F" Eukaryotic translation initiation factor 3 1121 1998-11-26 2007-07-27 2015-12-04 2015-12-04 8665 ENSG00000175390 OTTHUMG00000165675 uc001mfw.5 "U94855|AK093511" NM_003754 CCDS7785 O00303 9341143 MGI:1913335 RGD:1306112 EIF3F 603914 +HGNC:3276 EIF3FP1 eukaryotic translation initiation factor 3 subunit F pseudogene 1 pseudogene pseudogene Approved 21p11.2 21p11.2 "EIF3S5P|EIF3FP" "eukaryotic translation initiation factor 3, subunit 5 epsilon, 47kDa pseudogene|eukaryotic translation initiation factor 3, subunit F pseudogene|eukaryotic translation initiation factor 3, subunit F pseudogene 1" 2000-05-23 2009-11-25 2015-12-04 2015-12-04 54053 ENSG00000275945 OTTHUMG00000188301 NG_000925 PGOHUM00000297326 +HGNC:28863 EIF3FP2 eukaryotic translation initiation factor 3 subunit F pseudogene 2 pseudogene pseudogene Approved 13q11 13q11 IFP38 eukaryotic translation initiation factor 3, subunit F pseudogene 2 2007-07-30 2015-12-04 2015-12-04 83880 NG_005632 +HGNC:37625 EIF3FP3 eukaryotic translation initiation factor 3 subunit F pseudogene 3 pseudogene pseudogene Approved 2p16.1 02p16.1 eukaryotic translation initiation factor 3, subunit F pseudogene 3 2009-11-25 2015-12-04 2015-12-04 339799 ENSG00000233426 OTTHUMG00000152112 NG_006949.2 +HGNC:3274 EIF3G eukaryotic translation initiation factor 3 subunit G protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "eIF3-delta|eIF3-p44|eIF3g" EIF3S4 "eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa|eukaryotic translation initiation factor 3, subunit G" "RNA binding motif containing|Eukaryotic translation initiation factor 3" "725|1121" 1998-11-26 2007-07-27 2015-12-04 2015-12-04 8666 ENSG00000130811 OTTHUMG00000180396 uc002mnd.4 U96074 NM_003755 CCDS12227 O75821 9822659 MGI:1858258 RGD:1307191 EIF3G 603913 +HGNC:3273 EIF3H eukaryotic translation initiation factor 3 subunit H protein-coding gene gene with protein product Approved 8q23.3-q24.11 08q23.3-q24.11 "eIF3-gamma|eIF3-p40|eIF3h" EIF3S3 "eukaryotic translation initiation factor 3, subunit 3 gamma, 40kDa|eukaryotic translation initiation factor 3, subunit H" Eukaryotic translation initiation factor 3 1121 1998-11-26 2007-07-27 2015-12-04 2016-10-11 8667 ENSG00000147677 OTTHUMG00000164919 uc003yoa.4 U54559 NM_003756 CCDS6319 O15372 9341143 MGI:1915385 RGD:6495104 EIF3H 603912 +HGNC:3272 EIF3I eukaryotic translation initiation factor 3 subunit I protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "TRIP-1|eIF3-beta|eIF3-p36|eIF3i" EIF3S2 "eukaryotic translation initiation factor 3, subunit 2 beta, 36kDa|eukaryotic translation initiation factor 3, subunit I" "WD repeat domain containing|Eukaryotic translation initiation factor 3" "362|1121" 1998-11-26 2007-07-27 2015-12-04 2016-10-05 8668 ENSG00000084623 OTTHUMG00000007364 uc009vuc.4 U39067 NM_003757 CCDS357 Q13347 "7566156|8995409" MGI:1860763 RGD:1584560 EIF3I 603911 +HGNC:13277 EIF3IP1 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudogene pseudogene Approved 7q31.1 07q31.1 RG208K23 eukaryotic translation initiation factor 3, subunit I pseudogene 1 2007-08-02 2015-12-04 2016-10-05 442720 ENSG00000237064 OTTHUMG00000155015 NR_003024 PGOHUM00000302392 +HGNC:3270 EIF3J eukaryotic translation initiation factor 3 subunit J protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "eIF3-p35|eIF3-alpha|eIF3j" EIF3S1 "eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa|eukaryotic translation initiation factor 3, subunit J" Eukaryotic translation initiation factor 3 1121 1998-11-26 2007-07-27 2015-12-04 2015-12-04 8669 ENSG00000104131 OTTHUMG00000131158 uc001ztv.4 U97670 NM_003758 "CCDS10111|CCDS61612|CCDS61613" O75822 9822659 MGI:1925905 RGD:1593338 EIF3J 603910 +HGNC:48616 EIF3J-AS1 EIF3J antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 15q21.1 15q21.1 2013-05-24 2013-05-24 645212 ENSG00000179523 OTTHUMG00000171875 NR_034170 +HGNC:24656 EIF3K eukaryotic translation initiation factor 3 subunit K protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "eIF3k|PRO1474|HSPC029|PTD001|PLAC-24|M9|ARG134" EIF3S12 "eukaryotic translation initiation factor 3, subunit 12|eukaryotic translation initiation factor 3, subunit K" Eukaryotic translation initiation factor 3 1121 2005-01-10 2007-07-27 2015-12-04 2015-12-04 27335 ENSG00000178982 OTTHUMG00000180865 uc002oiz.2 AB019392 NM_013234 "CCDS12517|CCDS74360|CCDS77293" Q9UBQ5 "11042152|14519125" MGI:1921080 RGD:1309221 EIF3K 609596 +HGNC:44016 EIF3KP1 eukaryotic translation initiation factor 3 subunit K pseudogene 1 pseudogene pseudogene Approved 5q21.1 05q21.1 eukaryotic translation initiation factor 3, subunit K pseudogene 1 2012-05-28 2015-12-04 2015-12-04 134505 ENSG00000175749 OTTHUMG00000162879 NG_022888 PGOHUM00000235721 +HGNC:44017 EIF3KP2 eukaryotic translation initiation factor 3 subunit K pseudogene 2 pseudogene pseudogene Approved 3p24.2 03p24.2 eukaryotic translation initiation factor 3, subunit K pseudogene 2 2012-05-28 2015-12-04 2015-12-04 100129045 ENSG00000233544 OTTHUMG00000155682 NG_022242 PGOHUM00000237962 +HGNC:44018 EIF3KP3 eukaryotic translation initiation factor 3 subunit K pseudogene 3 pseudogene pseudogene Approved 4q26 04q26 eukaryotic translation initiation factor 3, subunit K pseudogene 3 2012-05-28 2015-12-04 2015-12-04 645368 ENSG00000250442 OTTHUMG00000161077 NG_022029 PGOHUM00000245665 +HGNC:18138 EIF3L eukaryotic translation initiation factor 3 subunit L protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "HSPC021|HSPC025|EIF3S11" "EIF3S6IP|EIF3EIP" "eukaryotic translation initiation factor 3, subunit 6 interacting protein|eukaryotic translation initiation factor 3, subunit E interacting protein|eukaryotic translation initiation factor 3, subunit L" Eukaryotic translation initiation factor 3 1121 2002-02-19 2009-01-07 2015-12-04 2016-10-05 51386 ENSG00000100129 OTTHUMG00000150671 uc003auf.3 AF083243 NM_016091 "CCDS13960|CCDS56230" Q9Y262 "11042152|11590142" MGI:2386251 RGD:1308230 EIF3L +HGNC:20010 EIF3LP1 eukaryotic translation initiation factor 3 subunit L pseudogene 1 pseudogene pseudogene Approved 14q31.1 14q31.1 "EIF3S6IPP|EIF3EIPP1" "eukaryotic translation initiation factor 3, subunit 6 interacting protein pseudogene|eukaryotic translation initiation factor 3, subunit E interacting protein pseudogene 1|eukaryotic translation initiation factor 3, subunit L pseudogene 1" 2003-01-13 2009-01-07 2015-12-04 2015-12-04 319117 ENSG00000258501 OTTHUMG00000171402 NG_002498 PGOHUM00000264216 +HGNC:24657 EIF3LP2 eukaryotic translation initiation factor 3 subunit L pseudogene 2 pseudogene pseudogene Approved 10q11.21 10q11.21 "EIF3S6IPP2|EIF3EIPP2" "eukaryotic translation initiation factor 3, subunit 6 interacting protein pseudogene 2|eukaryotic translation initiation factor 3, subunit E interacting protein pseudogene 2|eukaryotic translation initiation factor 3, subunit L pseudogene 2" 2004-05-27 2009-01-07 2015-12-04 2015-12-04 143341 ENSG00000233837 OTTHUMG00000018013 AL022345 NG_001544 PGOHUM00000238751 +HGNC:44976 EIF3LP3 eukaryotic translation initiation factor 3 subunit L pseudogene 3 pseudogene pseudogene Approved 10p11.1 10p11.1 eukaryotic translation initiation factor 3, subunit L pseudogene 3 2012-12-20 2015-12-04 2015-12-04 340947 ENSG00000226086 OTTHUMG00000017986 NG_022143 PGOHUM00000238414 +HGNC:24460 EIF3M eukaryotic translation initiation factor 3 subunit M protein-coding gene gene with protein product Approved 11p13 11p13 "hfl-B5|FLJ29030|GA17|eIF3m|TANGO7" transport and golgi organization 7 homolog (Drosophila) PCID1 "PCI domain containing 1 (herpesvirus entry mediator)|eukaryotic translation initiation factor 3, subunit M" Eukaryotic translation initiation factor 3 1121 2006-03-31 2007-07-27 2015-12-04 2015-12-04 10480 ENSG00000149100 OTTHUMG00000166258 uc001mtu.5 AK131064 NM_006360 "CCDS7880|CCDS76392" Q7L2H7 "15919898|15919899" MGI:1351744 RGD:1565840 EIF3M 609641 +HGNC:3282 EIF4A1 eukaryotic translation initiation factor 4A1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "DDX2A|EIF-4A" EIF4A eukaryotic translation initiation factor 4A, isoform 1 DEAD-box helicases 499 1991-03-04 2010-02-10 2016-10-05 1973 ENSG00000161960 OTTHUMG00000108149 uc060arb.1 D13748 NM_001416 "CCDS11113|CCDS58511" P60842 "8493113|9790779" MGI:95303 RGD:735141 EIF4A1 602641 +HGNC:3283 EIF4A1P1 eukaryotic translation initiation factor 4A1 pseudogene 1 pseudogene pseudogene Approved 21q21.3 21q21.3 EIF4A1P eukaryotic translation initiation factor 4A, isoform 1, pseudogene 2000-05-23 2010-02-10 2010-02-10 2014-11-28 54052 ENSG00000233300 OTTHUMG00000078696 NG_000924.4 PGOHUM00000297239 +HGNC:23946 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-02-16 2014-11-28 359792 ENSG00000235001 OTTHUMG00000035195 NG_002809 12815422 PGOHUM00000305421 +HGNC:37922 EIF4A1P3 eukaryotic translation initiation factor 4A1 pseudogene 3 pseudogene pseudogene Approved 9q34.13 09q34.13 2010-03-10 2014-11-28 100462824 ENSG00000231018 OTTHUMG00000020830 NG_021637 PGOHUM00000304060 +HGNC:37923 EIF4A1P4 eukaryotic translation initiation factor 4A1 pseudogene 4 pseudogene pseudogene Approved 12q13.13 12q13.13 2010-03-10 2014-11-28 728698 ENSG00000257790 OTTHUMG00000170024 XR_015801 PGOHUM00000291675 +HGNC:37924 EIF4A1P5 eukaryotic translation initiation factor 4A1 pseudogene 5 pseudogene pseudogene Approved 13q13.3 13q13.3 2010-03-10 2010-03-10 2014-11-28 390394 ENSG00000226161 OTTHUMG00000016744 NG_011401 PGOHUM00000291924 +HGNC:37925 EIF4A1P6 eukaryotic translation initiation factor 4A1 pseudogene 6 pseudogene pseudogene Approved 13q21.2 13q21.2 2010-03-10 2014-11-28 390407 ENSG00000236608 OTTHUMG00000017009 NG_022897 PGOHUM00000291972 +HGNC:37926 EIF4A1P7 eukaryotic translation initiation factor 4A1 pseudogene 7 pseudogene pseudogene Approved 13q12.3 13q12.3 2010-03-10 2014-11-28 341784 ENSG00000235472 OTTHUMG00000016649 NG_011333 PGOHUM00000292117 +HGNC:37927 EIF4A1P8 eukaryotic translation initiation factor 4A1 pseudogene 8 pseudogene pseudogene Approved 10q23.32 10q23.32 2010-03-10 2014-11-28 100289102 ENSG00000213484 OTTHUMG00000018754 NG_022188 PGOHUM00000290251 +HGNC:37928 EIF4A1P9 eukaryotic translation initiation factor 4A1 pseudogene 9 pseudogene pseudogene Approved 17p13.3 17p13.3 2010-03-10 2010-03-10 2014-11-28 642746 ENSG00000262953 OTTHUMG00000177802 NG_022440 PGOHUM00000293939 +HGNC:37930 EIF4A1P10 eukaryotic translation initiation factor 4A1 pseudogene 10 pseudogene pseudogene Approved Xq21.31 Xq21.31 2010-03-10 2014-11-28 100421533 ENSG00000229132 OTTHUMG00000021964 NG_022621 PGOHUM00000304755 +HGNC:37932 EIF4A1P11 eukaryotic translation initiation factor 4A1 pseudogene 11 pseudogene pseudogene Approved 1q25.2 01q25.2 2010-03-11 2014-11-28 100130006 ENSG00000231564 OTTHUMG00000041097 NG_021474 PGOHUM00000296671 +HGNC:37933 EIF4A1P12 eukaryotic translation initiation factor 4A1 pseudogene 12 pseudogene pseudogene Approved 14q12 14q12 2010-03-11 2014-11-28 100462830 ENSG00000257662 OTTHUMG00000170384 NG_022856 PGOHUM00000292609 +HGNC:37934 EIF4A1P13 eukaryotic translation initiation factor 4A1 pseudogene 13 pseudogene pseudogene Approved 7q21.12 07q21.12 2010-03-11 2014-11-28 100462826 ENSG00000225701 OTTHUMG00000154432 NG_022543 PGOHUM00000302339 +HGNC:3284 EIF4A2 eukaryotic translation initiation factor 4A2 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "DDX2B|EIF4A|BM-010" EIF4F eukaryotic translation initiation factor 4A, isoform 2 DEAD-box helicases 499 1995-05-10 2010-02-10 2016-10-05 1974 ENSG00000156976 OTTHUMG00000156564 uc003fqs.4 D30655 NM_001967 CCDS3282 Q14240 8521730 MGI:106906 RGD:1309225 EIF4A2 601102 3.6.1.1 +HGNC:37929 EIF4A2P1 eukaryotic translation initiation factor 4A2 pseudogene 1 pseudogene pseudogene Approved 18p11.21 18p11.21 2010-03-10 2014-11-28 646171 ENSG00000267336 OTTHUMG00000181908 NG_022488 PGOHUM00000294734 +HGNC:45099 EIF4A2P2 eukaryotic translation initiation factor 4A2 pseudogene 2 pseudogene pseudogene Approved 10q22.2 10q22.2 2013-02-15 2014-10-07 100421579 ENSG00000227382 OTTHUMG00000018452 NG_025519 PGOHUM00000290203 +HGNC:45100 EIF4A2P3 eukaryotic translation initiation factor 4A2 pseudogene 3 pseudogene pseudogene Approved 11q12.1 11q12.1 2013-02-15 2014-10-07 100133309 ENSG00000254589 OTTHUMG00000167464 NG_021786 PGOHUM00000290527 +HGNC:45101 EIF4A2P4 eukaryotic translation initiation factor 4A2 pseudogene 4 pseudogene pseudogene Approved Xp11.22 Xp11.22 2013-02-15 2014-10-07 286512 ENSG00000224781 OTTHUMG00000021588 NG_022602 PGOHUM00000304633 +HGNC:45102 EIF4A2P5 eukaryotic translation initiation factor 4A2 pseudogene 5 pseudogene pseudogene Approved 11p13 11p13 2013-02-15 2014-10-07 106480446 ENSG00000255490 OTTHUMG00000166234 NG_043426 PGOHUM00000290862 +HGNC:18683 EIF4A3 eukaryotic translation initiation factor 4A3 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "KIAA0111|EIF4AIII" DDX48 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 48|eukaryotic translation initiation factor 4A, isoform 3" "DEAD-box helicases|Exon junction complex" "499|1238" 2003-06-13 2006-11-27 2010-02-10 2016-03-24 9775 ENSG00000141543 OTTHUMG00000177538 uc002jxs.3 BC004386 NM_014740 CCDS11767 P38919 "10623621|14730019" MGI:1923731 RGD:1591139 EIF4A3 608546 390756 +HGNC:51460 EIF4A3P1 eukaryotic translation initiation factor 4A3 pseudogene 1 pseudogene pseudogene Approved 18q11.2 18q11.2 EIF4A3 pseudogene 1 2014-11-28 2015-04-07 2015-04-07 390843 ENSG00000266181 OTTHUMG00000179490 NG_022484 PGOHUM00000294628 +HGNC:3285 EIF4B eukaryotic translation initiation factor 4B protein-coding gene gene with protein product Approved 12q13.13 12q13.13 RNA binding motif containing 725 1991-03-04 2015-08-25 1975 ENSG00000063046 OTTHUMG00000169570 uc001sbh.5 X55733 NM_001417 "CCDS41788|CCDS73474" P23588 MGI:95304 RGD:1306479 EIF4B 603928 +HGNC:19929 EIF4BP1 eukaryotic translation initiation factor 4B pseudogene 1 pseudogene pseudogene Approved 14q21.2 14q21.2 EIF4BP eukaryotic translation initiation factor 4B pseudogene 2003-01-13 2010-03-11 2010-03-11 2014-11-28 319118 ENSG00000259019 OTTHUMG00000170683 NG_002499 PGOHUM00000292338 +HGNC:37935 EIF4BP2 eukaryotic translation initiation factor 4B pseudogene 2 pseudogene pseudogene Approved 10p12.31 10p12.31 2010-03-11 2014-11-28 100129337 ENSG00000228753 OTTHUMG00000017785 NG_017092 PGOHUM00000290060 +HGNC:37936 EIF4BP3 eukaryotic translation initiation factor 4B pseudogene 3 pseudogene pseudogene Approved 9q22.32 09q22.32 2010-03-11 2014-11-28 100128771 ENSG00000224546 OTTHUMG00000020290 XR_037860 PGOHUM00000304399 +HGNC:37937 EIF4BP4 eukaryotic translation initiation factor 4B pseudogene 4 pseudogene pseudogene Approved 3p22.1 03p22.1 2010-03-11 2014-11-28 100130064 ENSG00000229572 OTTHUMG00000156187 NG_022954 PGOHUM00000299416 +HGNC:37938 EIF4BP5 eukaryotic translation initiation factor 4B pseudogene 5 pseudogene pseudogene Approved 16q12.1 16q12.1 2010-03-11 2014-11-28 100421528 ENSG00000261336 OTTHUMG00000175532 NG_022504 PGOHUM00000293598 +HGNC:37939 EIF4BP6 eukaryotic translation initiation factor 4B pseudogene 6 pseudogene pseudogene Approved 7q22.2 07q22.2 2010-03-11 2014-11-28 645579 ENSG00000197258 OTTHUMG00000157274 NG_005592 PGOHUM00000302879 +HGNC:37940 EIF4BP7 eukaryotic translation initiation factor 4B pseudogene 7 pseudogene pseudogene Approved Xq23 Xq23 2010-03-11 2014-11-28 643873 ENSG00000225031 OTTHUMG00000022206 XR_039149 PGOHUM00000304801 +HGNC:37941 EIF4BP8 eukaryotic translation initiation factor 4B pseudogene 8 pseudogene pseudogene Approved 3q21.1 03q21.1 2010-03-11 2014-11-28 339881 ENSG00000243918 OTTHUMG00000159551 XR_078291 PGOHUM00000299557 +HGNC:37942 EIF4BP9 eukaryotic translation initiation factor 4B pseudogene 9 pseudogene pseudogene Approved Xq12 Xq12 2010-03-11 2014-11-28 100129692 ENSG00000237294 OTTHUMG00000021731 NG_022999 PGOHUM00000304676 +HGNC:3287 EIF4E eukaryotic translation initiation factor 4E protein-coding gene gene with protein product Approved 4q23 04q23 EIF4E1 "EIF4EL1|EIF4F" 1991-07-09 2015-08-25 1977 ENSG00000151247 OTTHUMG00000161090 uc003hue.3 M15353 NM_001968 "CCDS34031|CCDS47109|CCDS54779|CCDS82940" P06730 "9330633|1916814" MGI:95305 RGD:69647 EIF4E 133440 225299 +HGNC:33179 EIF4E1B eukaryotic translation initiation factor 4E family member 1B protein-coding gene gene with protein product Approved 5q35.2 05q35.2 FLJ36951 2006-11-13 2015-08-25 253314 ENSG00000175766 OTTHUMG00000163227 uc010jkf.1 NM_001099408 CCDS47345 A6NMX2 16191198 MGI:2685119 RGD:1585494 EIF4E1B +HGNC:3293 EIF4E2 eukaryotic translation initiation factor 4E family member 2 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "IF4e|4EHP" EIF4EL3 eukaryotic translation initiation factor 4E-like 3 1999-07-22 2004-10-30 2006-11-13 2015-08-25 9470 ENSG00000135930 OTTHUMG00000133256 uc002vta.5 AF038957 NM_004846 "CCDS2496|CCDS63158|CCDS63159|CCDS74671|CCDS82579" O60573 "9653160|9582349" MGI:1914440 RGD:1307790 EIF4E2 605895 +HGNC:16237 EIF4E2P1 eukaryotic translation initiation factor 4E family member 2 pseudogene 1 pseudogene pseudogene Approved 20p11.23 20p11.23 dJ1049G11.3 EIF4EL4 eukaryotic translation initiation factor 4E-like 4 2001-07-17 2004-10-30 2006-11-13 2014-11-28 128770 ENSG00000213384 OTTHUMG00000032008 NG_005202 PGOHUM00000297065 +HGNC:51464 EIF4E2P2 eukaryotic translation initiation factor 4E family member 2 pseudogene 2 pseudogene pseudogene Approved 3q13.31 03q13.31 2014-11-28 2014-11-28 645207 ENSG00000244157 OTTHUMG00000159302 NG_022265 PGOHUM00000299541 +HGNC:31837 EIF4E3 eukaryotic translation initiation factor 4E family member 3 protein-coding gene gene with protein product Approved 3p13 03p13 MGC39820 eukaryotic translation initiation factor 4E member 3 2004-10-29 2006-11-13 2016-10-05 317649 ENSG00000163412 OTTHUMG00000158797 uc003dov.5 AK126999 NM_173359 "CCDS33786|CCDS46867" Q8N5X7 15153109 MGI:1914142 RGD:1586185 EIF4E3 609896 +HGNC:3288 EIF4EBP1 eukaryotic translation initiation factor 4E binding protein 1 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "PHAS-I|4E-BP1" phosphorylated heat- and acid-stable protein regulated by insulin 1 1996-10-26 2016-10-05 1978 ENSG00000187840 OTTHUMG00000164012 uc003xks.4 NM_004095 CCDS6100 Q13541 7935836 MGI:103267 RGD:620259 EIF4EBP1 602223 +HGNC:20160 EIF4EBP1P1 eukaryotic translation initiation factor 4E binding protein 1 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 EIF4EBP1P eukaryotic translation initiation factor 4E binding protein 1 pseudogene 2003-01-13 2012-05-29 2012-05-29 2014-11-28 326295 ENSG00000258870 OTTHUMG00000170805 NG_002547 PGOHUM00000292580 +HGNC:44047 EIF4EBP1P2 eukaryotic translation initiation factor 4E binding protein 1 pseudogene 2 pseudogene pseudogene Approved 22q11.23 alternate reference locus 22q11.23 alternate reference locus 2012-05-29 2012-05-29 2014-10-10 768328 KI270879 NG_005781 PGOHUM00000246533 +HGNC:3289 EIF4EBP2 eukaryotic translation initiation factor 4E binding protein 2 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 1996-10-26 2016-10-05 1979 ENSG00000148730 OTTHUMG00000018409 uc001jrb.4 NM_004096 CCDS7303 Q13542 "7935836|8975712" MGI:109198 RGD:1310824 EIF4EBP2 602224 +HGNC:16596 EIF4EBP2P1 eukaryotic translation initiation factor 4E binding protein 2 pseudogene 1 pseudogene pseudogene Approved 20q13.11 20q13.11 dJ862K6.3 EIF4EBP2P eukaryotic translation initiation factor 4E binding protein 2 pseudogene 2001-09-17 2013-10-16 2013-10-16 2014-11-28 170510 ENSG00000233711 OTTHUMG00000032500 AL031681 NG_001034 PGOHUM00000297000 +HGNC:49317 EIF4EBP2P2 eukaryotic translation initiation factor 4E binding protein 2 pseudogene 2 pseudogene pseudogene Approved 15q15.2 15q15.2 2013-10-16 2014-11-28 100190923 ENSG00000260282 OTTHUMG00000175800 NG_008682 PGOHUM00000292924 +HGNC:49318 EIF4EBP2P3 eukaryotic translation initiation factor 4E binding protein 2 pseudogene 3 pseudogene pseudogene Approved 6q16.1 06q16.1 2013-10-16 2014-11-28 100190924 ENSG00000220505 OTTHUMG00000015253 NG_008683 PGOHUM00000301485 +HGNC:3290 EIF4EBP3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 4E-BP3 1998-11-18 2015-08-25 8637 ENSG00000243056 OTTHUMG00000129498 uc003lfy.1 AF038869 NM_003732 CCDS4226 O60516 9593750 MGI:1270847 RGD:2324556 EIF4EBP3 603483 +HGNC:16687 EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "4E-T|FLJ21601|Clast4|2610509L04Rik" 2002-06-18 2016-10-05 56478 ENSG00000184708 OTTHUMG00000030793 uc003ala.3 AF240775 NM_019843 "CCDS13898|CCDS54520" Q9NRA8 10856257 MGI:1921453 RGD:1560908 EIF4ENIF1 607445 367352 +HGNC:3292 EIF4EP1 eukaryotic translation initiation factor 4E pseudogene 1 pseudogene pseudogene Approved 20p12.3 20p12.3 dJ1022P6.3 EIF4EL2 eukaryotic translation initiation factor 4E-like 2 1991-03-04 2004-10-29 2004-10-29 2014-11-28 1980 ENSG00000233578 OTTHUMG00000031807 AL109935 NG_002658 "1916814|9468520" PGOHUM00000297042 +HGNC:32428 EIF4EP2 eukaryotic translation initiation factor 4E pseudogene 2 pseudogene pseudogene Approved 17q21.33 17q21.33 2007-07-24 2014-11-28 100131693 ENSG00000229944 OTTHUMG00000132439 NG_023334 PGOHUM00000294150 +HGNC:51461 EIF4EP3 eukaryotic translation initiation factor 4E pseudogene 3 pseudogene pseudogene Approved 3q26.33 03q26.33 2014-11-28 2014-11-28 100132918 ENSG00000244199 OTTHUMG00000158292 NG_022231 PGOHUM00000299294 +HGNC:51462 EIF4EP4 eukaryotic translation initiation factor 4E pseudogene 4 pseudogene pseudogene Approved 7q21.11 07q21.11 2014-11-28 2014-11-28 100421455 ENSG00000232968 OTTHUMG00000155411 NG_026487 PGOHUM00000302332 +HGNC:51463 EIF4EP5 eukaryotic translation initiation factor 4E pseudogene 5 pseudogene pseudogene Approved 8p22 08p22 2014-11-28 2014-11-28 100131565 ENSG00000214366 OTTHUMG00000165492 NG_008899 PGOHUM00000303463 +HGNC:3296 EIF4G1 eukaryotic translation initiation factor 4 gamma 1 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "p220|PARK18" "EIF4G|EIF4F" eukaryotic translation initiation factor 4 gamma, 1 Parkinson disease associated genes 672 1993-06-17 2016-02-03 2016-04-25 1981 ENSG00000114867 OTTHUMG00000156784 uc003fnp.4 D12686 NM_182917 "CCDS3259|CCDS3260|CCDS3261|CCDS46970|CCDS54687|CCDS54688|CCDS77866" Q04637 "1429670|9372926|21907011" MGI:2384784 RGD:1306144 EIF4G1 600495 285068 +HGNC:3297 EIF4G2 eukaryotic translation initiation factor 4 gamma 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "DAP5|NAT1|p97" eukaryotic translation initiation factor 4 gamma, 2 1998-02-17 2016-02-03 2016-10-05 1982 ENSG00000110321 OTTHUMG00000165823 uc057zbi.1 U73824 NM_001418 "CCDS31428|CCDS41618" P78344 "9030685|9032289" MGI:109207 RGD:1305294 EIF4G2 602325 +HGNC:3298 EIF4G3 eukaryotic translation initiation factor 4 gamma 3 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 eIF4GII eukaryotic translation initiation factor 4 gamma, 3 1998-11-30 2016-02-03 2016-02-03 8672 ENSG00000075151 OTTHUMG00000002624 uc057daj.1 AF012072 NM_003760 "CCDS214|CCDS55580|CCDS59192|CCDS72723" O43432 9418880 MGI:1923935 RGD:1311370 EIF4G3 603929 +HGNC:12741 EIF4H eukaryotic translation initiation factor 4H protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "WSCR1|KIAA0038" WBSCR1 Williams-Beuren syndrome chromosome region 1 RNA binding motif containing 725 1997-09-12 2006-11-27 2006-11-27 2014-11-19 7458 ENSG00000106682 OTTHUMG00000023025 uc003uad.2 NM_022170 "CCDS5564|CCDS5565" Q15056 "9516461|15078951" MGI:1341822 RGD:1359222 EIF4H 603431 +HGNC:49035 EIF4HP1 eukaryotic translation initiation factor 4H pseudogene 1 pseudogene pseudogene Approved 7p15.2 07p15.2 2013-08-15 2014-11-28 401316 ENSG00000233830 OTTHUMG00000152711 NG_004756 PGOHUM00000302081 +HGNC:49036 EIF4HP2 eukaryotic translation initiation factor 4H pseudogene 2 pseudogene pseudogene Approved 22q12.2 22q12.2 2013-08-15 2014-11-28 100421545 ENSG00000237977 OTTHUMG00000151158 NG_027477 PGOHUM00000297738 +HGNC:3281 EIF4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3299 EIF5 eukaryotic translation initiation factor 5 protein-coding gene gene with protein product Approved 14q32.32 14q32.32 1991-03-04 2014-11-28 1983 ENSG00000100664 OTTHUMG00000171839 uc001ymq.5 U49436 NM_001969 CCDS9980 P55010 8663286 MGI:95309 RGD:619861 EIF5 601710 +HGNC:3300 EIF5A eukaryotic translation initiation factor 5A protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "EIF5A1|EIF-5A|MGC99547|MGC104255" 1991-03-04 2016-10-05 1984 ENSG00000132507 OTTHUMG00000102197 uc010vtv.3 NM_001970 "CCDS11099|CCDS45601" P63241 7759117 MGI:106248 RGD:1308029 EIF5A 600187 +HGNC:3301 EIF5A2 eukaryotic translation initiation factor 5A2 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 2000-08-11 2015-09-11 56648 ENSG00000163577 OTTHUMG00000158958 uc003fhd.4 AF293386 NM_020390 CCDS3214 Q9GZV4 MGI:1933735 RGD:1306196 EIF5A2 605782 +HGNC:51467 EIF5A2P1 eukaryotic translation initiation factor 5A2 pseudogene 1 pseudogene pseudogene Approved 15q23 15q23 2014-11-28 2014-11-28 100506058 ENSG00000260576 OTTHUMG00000172845 NG_030230 PGOHUM00000293002 +HGNC:17419 EIF5AL1 eukaryotic translation initiation factor 5A-like 1 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 bA342M3.3 EIF5AP1 eukaryotic translation initiation factor 5A pseudogene 1 2004-05-27 2015-08-27 143244 ENSG00000253626 OTTHUMG00000018563 uc009xrx.4 NM_001099692 CCDS53546 Q6IS14 EIF5AL1 +HGNC:3303 EIF5AP2 eukaryotic translation initiation factor 5A pseudogene 2 pseudogene pseudogene Approved 17q25.3 17q25.3 1994-09-06 2014-11-28 1986 ENSG00000267679 OTTHUMG00000177447 S72038 NG_002746 "7545941|7759117" PGOHUM00000294551 +HGNC:3304 EIF5AP3 eukaryotic translation initiation factor 5A pseudogene 3 pseudogene pseudogene Approved 19q13.32 19q13.32 1995-02-17 2014-11-28 1987 ENSG00000267346 OTTHUMG00000181771 S72026 NG_002725 7759117 PGOHUM00000295390 +HGNC:31442 EIF5AP4 eukaryotic translation initiation factor 5A pseudogene 4 pseudogene pseudogene Approved 10q22.3 10q22.3 EIF5AL3 eukaryotic translation initiation factor 5A-like 3 2004-05-27 2012-04-19 2012-04-19 2016-10-05 642592 ENSG00000234743 OTTHUMG00000018608 NG_006529 PGOHUM00000289929 +HGNC:30793 EIF5B eukaryotic translation initiation factor 5B protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "IF2|KIAA0741|DKFZp434I036|FLJ10524" translation initiation factor IF2 2004-01-09 2014-11-19 9669 ENSG00000158417 OTTHUMG00000153242 uc002tab.4 AF078035 NM_015904 CCDS42721 O60841 "10200264|10432305" MGI:2441772 RGD:735017 EIF5B 606086 +HGNC:51465 EIF5P1 eukaryotic translation initiation factor 5 pseudogene 1 pseudogene pseudogene Approved Xp22.2 Xp22.2 2014-11-28 2014-11-28 100421390 ENSG00000215319 OTTHUMG00000021119 NG_026657 PGOHUM00000304508 +HGNC:51466 EIF5P2 eukaryotic translation initiation factor 5 pseudogene 2 pseudogene pseudogene Approved Xp22.12 Xp22.12 2014-11-28 2014-11-28 100421391 ENSG00000275800 OTTHUMG00000188005 NG_026664 PGOHUM00000304527 +HGNC:6159 EIF6 eukaryotic translation initiation factor 6 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "p27BBP|b(2)gcn" "EIF3A|ITGB4BP" integrin beta 4 binding protein 1998-03-24 2007-07-27 2007-07-27 2016-10-05 3692 ENSG00000242372 OTTHUMG00000032328 uc002xbx.3 Y11435 NM_002212 "CCDS13249|CCDS13250" P56537 "9374518|9740680" MGI:1196288 RGD:1305373 EIF6 602912 +HGNC:3306 EJM2 epilepsy, juvenile myoclonic 2 phenotype phenotype only Approved 15q14 15q14 EIG7 2000-07-31 2011-02-10 50715 9259280 604827 +HGNC:14197 ELAC1 elaC ribonuclease Z 1 protein-coding gene gene with protein product Approved 18q21.2 18q21.2 D29 "tRNA Z (short form)|RNaseZ(S)" "elaC (E. coli) homolog 1|elaC homolog 1 (E. coli)" 2000-12-12 2013-05-24 2016-10-05 55520 ENSG00000141642 OTTHUMG00000132695 uc002lez.4 AB029151 NM_018696 CCDS11949 Q9H777 "12711671|21559454" MGI:1890495 RGD:1304757 ELAC1 608079 3.1.26.11 +HGNC:14198 ELAC2 elaC ribonuclease Z 2 protein-coding gene gene with protein product Approved 17p12 17p12 "FLJ10530|HPC2" tRNase Z (long form) "elaC (E. coli) homolog 2|elaC homolog 2 (E. coli)" 2000-12-14 2013-05-24 2016-10-05 60528 ENSG00000006744 OTTHUMG00000058764 uc002gnz.5 AF304370 NM_018127 "CCDS11164|CCDS54093" Q9BQ52 "10986046|16636667|21559454" MGI:1890496 RGD:628882 ELAC2 605367 121513 3.1.26.11 +HGNC:3309 ELANE elastase, neutrophil expressed protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "NE|HNE|HLE" "neutrophil elastase|leukocyte elastase|medullasin" ELA2 elastase 2, neutrophil 1989-09-08 2009-05-05 2009-05-05 2016-10-12 1991 ENSG00000197561 OTTHUMG00000181839 uc002lqb.4 NM_001972 CCDS12045 P08246 2902087 MGI:2679229 RGD:1307968 "ELA2base: Mutation registry for Cyclic and congenital neutropenia|http://structure.bmc.lu.se/idbase/ELA2base/|LRG_57|http://www.lrg-sequence.org/LRG/LRG_57" ELANE 130130 121511 S01.131 objectId:2358 3.4.21.37 +HGNC:3312 ELAVL1 ELAV like RNA binding protein 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "HuR|Hua|MelG" "embryonic lethal, abnormal vision, drosophila, homolog-like 1|Hu antigen R" HUR ELAV (embryonic lethal, abnormal vision, Drosophila)-like 1 (Hu antigen R) RNA binding motif containing 725 1996-08-12 2013-10-03 2015-07-22 1994 ENSG00000066044 OTTHUMG00000182470 uc060ssp.1 U38175 NM_001419 CCDS12193 Q15717 "8626503|9003489" MGI:1100851 RGD:1308649 ELAVL1 603466 +HGNC:3313 ELAVL2 ELAV like RNA binding protein 2 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "HuB|HEL-N1" Hu antigen B "ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)|ELAV like neuron-specific RNA binding protein 2" RNA binding motif containing 725 1996-11-15 2016-08-22 2016-10-05 1993 ENSG00000107105 OTTHUMG00000019700 uc003zpu.4 BC030692 NM_004432 "CCDS6515|CCDS55298" Q12926 8812435 MGI:1100887 RGD:628611 ELAVL2 601673 +HGNC:3314 ELAVL3 ELAV like RNA binding protein 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "HUC|PLE21|DKFZp547J036|HUCL|MGC20653" "Hu antigen C|paraneoplastic limbic encephalitis antigen 21|paraneoplastic cerebellar degeneration-associated antigen|ELAV-like protein 3" "ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)|ELAV like neuron-specific RNA binding protein 3" RNA binding motif containing 725 1997-07-04 2016-08-22 2016-08-22 1995 ENSG00000196361 OTTHUMG00000182030 uc002mry.2 NM_001420 "CCDS32912|CCDS45978" Q14576 9799595 MGI:109157 RGD:628892 ELAVL3 603458 +HGNC:3315 ELAVL4 ELAV like RNA binding protein 4 protein-coding gene gene with protein product Approved 1p33-p32.3 01p33-p32.3 PNEM Hu antigen D HUD "ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)|ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4|ELAV like neuron-specific RNA binding protein 4" RNA binding motif containing 725 1993-07-12 2016-08-22 2016-10-11 1996 ENSG00000162374 OTTHUMG00000007877 uc010omz.3 AY033998 NM_021952 "CCDS44138|CCDS44139|CCDS44140|CCDS53315|CCDS553|CCDS72788|CCDS81321" P26378 8222755 MGI:107427 RGD:1560027 ELAVL4 168360 +HGNC:49511 ELDR EGFR long non-coding downstream RNA non-coding RNA RNA, long non-coding Approved 7p11.2 07p11.2 Fabl LINC01156 long intergenic non-protein coding RNA 1156 2014-01-01 2014-05-20 2014-05-20 2014-05-20 102725541 ENSG00000280890 OTTHUMG00000189565 DB084610 NR_110426 MGI:1919985 +HGNC:3316 ELF1 E74 like ETS transcription factor 1 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 E74-like factor 1 (ets domain transcription factor) ETS transcription factor family 534 1995-03-23 2016-02-25 2016-10-05 1997 ENSG00000120690 OTTHUMG00000016783 uc001uxs.4 M82882 NM_172373 "CCDS9374|CCDS45043" P32519 1545787 MGI:107180 RGD:620697 ELF1 189973 +HGNC:3317 ELF2 E74 like ETS transcription factor 2 protein-coding gene gene with protein product Approved 4q31.1 04q31.1 "EU32|NERF|NERF-2|NERF-1A|NERF-1B" E74-like factor 2 (ets domain transcription factor) ETS transcription factor family 534 1996-04-12 2016-02-25 2016-10-05 1998 ENSG00000109381 OTTHUMG00000133383 uc003ihp.2 AF256222 NM_006874 "CCDS3744|CCDS3745|CCDS64062|CCDS64063|CCDS82954" Q15723 8756667 MGI:1916507 RGD:1310585 ELF2 +HGNC:33539 ELF2P1 E74-like factor 2 pseudogene 1 pseudogene pseudogene Approved Xq22.2 Xq22.2 2007-07-25 2010-05-19 100101917 NG_006555 +HGNC:24610 ELF2P2 E74-like factor 2 pseudogene 2 pseudogene pseudogene Approved 6p25.3 06p25.3 2007-07-25 2007-07-25 260335 AF256220 NG_002340 9001422 +HGNC:24611 ELF2P3 E74-like factor 2 pseudogene 3 pseudogene pseudogene Approved 9q22.1 09q22.1 2007-07-25 2007-07-25 260336 NG_002341 9001422 +HGNC:33540 ELF2P4 E74-like factor 2 pseudogene 4 pseudogene pseudogene Approved 2q32.1 02q32.1 2007-07-25 2010-05-19 644935 NG_006556 +HGNC:3318 ELF3 E74 like ETS transcription factor 3 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "EPR-1|ESE-1|ERT" ESX E74-like factor 3 (ets domain transcription factor, epithelial-specific ) ETS transcription factor family 534 1996-04-12 2016-02-25 2016-10-05 1999 ENSG00000163435 OTTHUMG00000035867 uc001gxg.5 AF016295 NM_004433 CCDS1419 P78545 "9395241|9129154" MGI:1101781 RGD:1310687 ELF3 602191 +HGNC:3319 ELF4 E74 like ETS transcription factor 4 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "MEF|ELFR" E74-like factor 4 (ets domain transcription factor) ETS transcription factor family 534 1996-10-11 2016-02-25 2016-10-12 2000 ENSG00000102034 OTTHUMG00000022390 uc004eve.5 U32645 NM_001421 CCDS14617 Q99607 8895518 MGI:1928377 RGD:1560743 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ELF4|LRG_335|http://www.lrg-sequence.org/LRG/LRG_335" ELF4 300775 306189 +HGNC:3320 ELF5 E74 like ETS transcription factor 5 protein-coding gene gene with protein product Approved 11p13 11p13 E74-like factor 5 (ets domain transcription factor) ETS transcription factor family 534 1998-04-22 2016-02-25 2016-10-05 2001 ENSG00000135374 OTTHUMG00000166451 uc001mvp.3 AF049703 NM_198381 "CCDS7892|CCDS7893|CCDS58129|CCDS73273" Q9UKW6 9840936 MGI:1335079 RGD:1305859 ELF5 605169 +HGNC:33154 ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 PPP1R28 "extracellular leucine-rich repeat and fibronectin type III containing 1|protein phosphatase 1, regulatory subunit 28" "Fibronectin type III domain containing|Protein phosphatase 1 regulatory subunits" "555|694" 2007-09-24 2011-10-27 2016-06-06 2016-06-06 392617 ENSG00000225968 OTTHUMG00000151495 uc064aye.1 NM_001128636 CCDS59046 P0C7U0 17868438 MGI:2442479 RGD:1308787 ELFN1 614964 +HGNC:39071 ELFN1-AS1 ELFN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p22.3 07p22.3 MYCLo-2 2014-03-01 2016-07-13 101927125 ENSG00000236081 OTTHUMG00000151496 BX119057 NR_120510 "24707484|25663692" +HGNC:29396 ELFN2 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "dJ63G5.3|KIAA1904" "LRRC62|PPP1R29" "leucine rich repeat containing 62|extracellular leucine-rich repeat and fibronectin type III containing 2|protein phosphatase 1, regulatory subunit 29" "Fibronectin type III domain containing|Protein phosphatase 1 regulatory subunits" "555|694" 2006-10-16 2011-10-27 2016-06-06 2016-06-06 114794 ENSG00000166897 OTTHUMG00000150558 uc003asq.4 BC041596 NM_052906 CCDS33642 Q5R3F8 17868438 MGI:3608416 RGD:1559693 ELFN2 +HGNC:3321 ELK1 ELK1, ETS transcription factor protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 ELK1, member of ETS oncogene family ETS transcription factor family 534 1989-06-30 2016-02-24 2016-02-24 2002 ENSG00000126767 OTTHUMG00000021452 uc010nhv.5 M25269 NM_005229 "CCDS14283|CCDS59165" P19419 2539641 MGI:101833 RGD:1598663 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ELK1 ELK1 311040 +HGNC:39021 ELK1P1 ELK1, member of ETS oncogene family pseudogene 1 pseudogene pseudogene Approved 7p13 07p13 ELK1 pseudogene 1 2010-09-23 2015-04-07 2016-10-05 647102 ENSG00000234359 OTTHUMG00000159177 NG_006972 PGOHUM00000250863 +HGNC:3323 ELK2AP ELK2A, member of ETS oncogene family, pseudogene pseudogene pseudogene Approved 14q32.33 14q32.33 ELK2.1 "ELK2|ELK2P1" ELK2, member of ETS oncogene family, pseudogene 1 1989-06-30 2010-02-01 2010-02-01 2014-11-19 2003 ENSG00000213140 OTTHUMG00000152492 AF080617 NR_046211 "9795224|10231026" PGOHUM00000247909 +HGNC:3324 ELK2BP ELK2B, member of ETS oncogene family, pseudogene pseudogene pseudogene Approved 14q32.33 14q32.33 ELK2.2 ELK2P2 ELK2, member of ETS oncogene family, pseudogene 2 1999-05-10 2010-02-01 2010-02-01 2016-10-05 9995 ENSG00000234402 OTTHUMG00000152473 AF080618 NG_046879 "9795224|10231026" PGOHUM00000247903 +HGNC:3325 ELK3 ELK3, ETS transcription factor protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "ERP|NET|SAP2" SRF accessory protein 2 ELK3, ETS-domain protein (SRF accessory protein 2) ETS transcription factor family 534 1994-12-23 2016-02-24 2016-10-05 2004 ENSG00000111145 OTTHUMG00000170364 uc001teo.2 BC017371 NM_005230 CCDS9060 P41970 7851904 MGI:101762 RGD:1307764 ELK3 600247 +HGNC:3326 ELK4 ELK4, ETS transcription factor protein-coding gene gene with protein product Approved 1q32.1 01q32.1 SAP1 SRF accessory protein 1 ELK4, ETS-domain protein (SRF accessory protein 1) ETS transcription factor family 534 1994-12-23 2016-02-24 2016-10-05 2005 ENSG00000158711 OTTHUMG00000037221 uc001hcy.3 M85165 NM_021795 "CCDS1456|CCDS1457" P28324 "7851904|8575773" MGI:102853 RGD:1310504 ELK4 600246 +HGNC:23114 ELL elongation factor for RNA polymerase II protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "Men|ELL1|PPP1R68" "protein phosphatase 1, regulatory subunit 68|eleven-nineteen lysine-rich leukemia gene" C19orf17 "chromosome 19 open reading frame 17|elongation factor RNA polymerase II" "Protein phosphatase 1 regulatory subunits|Super elongation complex" "694|1280" 2003-09-17 2016-01-21 2016-10-05 8178 ENSG00000105656 OTTHUMG00000183364 uc002njh.3 U16282 NM_006532 CCDS12380 P55199 "7991593|8596958" MGI:109377 RGD:1311121 ELL 600284 +HGNC:17064 ELL2 elongation factor for RNA polymerase II 2 protein-coding gene gene with protein product Approved 5q15 05q15 elongation factor, RNA polymerase II, 2 Super elongation complex 1280 2003-09-17 2016-03-01 2016-03-01 22936 ENSG00000118985 OTTHUMG00000122085 uc003klr.4 U88629 NM_012081 CCDS4080 O00472 9108030 MGI:2183438 RGD:1309296 ELL2 601874 +HGNC:39343 ELL2P1 elongation factor for RNA polymerase II 2 pseudogene 1 pseudogene pseudogene Approved 1q23.1 01q23.1 elongation factor, RNA polymerase II, 2 pseudogene 1 2010-11-29 2016-01-21 2016-01-21 646270 ENSG00000227295 OTTHUMG00000022442 NG_006626 PGOHUM00000244293 +HGNC:39344 ELL2P2 elongation factor for RNA polymerase II 2 pseudogene 2 pseudogene pseudogene Approved 4q28.3 04q28.3 elongation factor, RNA polymerase II, 2 pseudogene 2 2010-11-29 2016-01-21 2016-01-21 100421143 ENSG00000251051 OTTHUMG00000161251 NG_025163 PGOHUM00000245698 +HGNC:39345 ELL2P3 elongation factor for RNA polymerase II 2 pseudogene 3 pseudogene pseudogene Approved 13q21.33 13q21.33 elongation factor, RNA polymerase II, 2 pseudogene 3 2010-11-29 2016-03-11 2016-03-11 100533713 ENSG00000234765 OTTHUMG00000017046 NG_028874 PGOHUM00000248425 +HGNC:39346 ELL2P4 elongation factor for RNA polymerase II 2 pseudogene 4 pseudogene pseudogene Approved Xq27.3 Xq27.3 elongation factor, RNA polymerase II, 2 pseudogene 4 2010-11-29 2016-03-11 2016-03-11 100128690 ENSG00000226388 OTTHUMG00000022597 NG_022711 PGOHUM00000242063 +HGNC:23113 ELL3 elongation factor for RNA polymerase II 3 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 FLJ22637 elongation factor RNA polymerase II-like 3 Super elongation complex 1280 2003-09-17 2016-01-21 2016-10-05 80237 ENSG00000128886 OTTHUMG00000059936 uc001zsw.2 AF276512 NM_025165 CCDS10102 Q9HB65 10882741 MGI:2673679 RGD:1309917 ELL3 609885 +HGNC:16286 ELMO1 engulfment and cell motility 1 protein-coding gene gene with protein product Approved 7p14.2-p14.1 07p14.2-p14.1 "KIAA0281|CED12|ELMO-1|CED-12" engulfment and cell motility 1 (ced-12 homolog, C. elegans) Engulfment and cell motility proteins 543 2001-12-13 2006-01-20 2016-10-11 9844 ENSG00000155849 OTTHUMG00000023701 uc003tfk.3 AF398885 NM_130442 "CCDS5449|CCDS5450" Q92556 11595183 MGI:2153044 RGD:1308182 ELMO1 606420 +HGNC:40765 ELMO1-AS1 ELMO1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p14.2 07p14.2 ELMO1 antisense RNA 1 (non-protein coding) 2011-12-12 2012-08-15 2014-11-19 100861514 ENSG00000224101 OTTHUMG00000154988 uc032zka.1 DA058843 NR_104120 +HGNC:17233 ELMO2 engulfment and cell motility 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "CED12|ELMO-2|CED-12|KIAA1834|FLJ11656" engulfment and cell motility 2 (ced-12 homolog, C. elegans) Engulfment and cell motility proteins 543 2001-12-13 2006-01-20 2016-10-05 63916 ENSG00000062598 OTTHUMG00000033070 uc002xru.2 AF398886 NM_022086 "CCDS13398|CCDS82623" Q96JJ3 11595183 MGI:2153045 RGD:1305784 ELMO2 606421 +HGNC:38008 ELMO2P1 engulfment and cell motility 2 pseudogene 1 pseudogene pseudogene Approved 15q11.2 15q11.2 2010-03-18 2015-02-02 729894 ENSG00000276172 OTTHUMG00000188345 NG_022962 PGOHUM00000246662 +HGNC:17289 ELMO3 engulfment and cell motility 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ13824|CED12|ELMO-3|CED-12" engulfment and cell motility 3 (ced-12 homolog, C. elegans) Engulfment and cell motility proteins 543 2001-12-13 2006-01-20 2015-09-11 79767 ENSG00000102890 OTTHUMG00000133570 uc002esa.4 NM_024712 CCDS10833 Q96BJ8 11595183 MGI:2679007 RGD:1304734 ELMO3 606422 +HGNC:25334 ELMOD1 ELMO domain containing 1 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 DKFZp547C176 ELMO/CED-12 domain containing 1 2004-08-20 2016-02-29 2016-10-05 55531 ENSG00000110675 OTTHUMG00000166361 uc001pjm.4 AL359601 NM_018712 "CCDS44723|CCDS44724|CCDS76472" Q8N336 12477932 MGI:3583900 RGD:1564186 ELMOD1 615456 +HGNC:28111 ELMOD2 ELMO domain containing 2 protein-coding gene gene with protein product Approved 4q31.1 04q31.1 MGC10084 ELMO/CED-12 domain containing 2 2004-08-20 2016-02-29 2016-02-29 255520 ENSG00000179387 OTTHUMG00000133417 uc003iik.3 BX648349 NM_153702 CCDS3752 Q8IZ81 16773575 MGI:2445165 RGD:1587598 ELMOD2 610196 +HGNC:26158 ELMOD3 ELMO domain containing 3 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 FLJ21977 "RBM29|RBED1|DFNB88" "RNA binding motif protein 29|RNA binding motif and ELMO/CED-12 domain 1|deafness, autosomal recessive 88|ELMO/CED-12 domain containing 3" RNA binding motif containing 725 2004-06-03 2008-08-14 2016-02-29 2016-02-29 84173 ENSG00000115459 OTTHUMG00000130170 uc002spg.5 AF258573 NM_032213 "CCDS1973|CCDS46352" Q96FG2 24039609 MGI:2445168 RGD:1306408 ELMOD3 615427 364285 +HGNC:19853 ELMSAN1 ELM2 and Myb/SANT domain containing 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 LSR68 "C14orf117|C14orf43" "chromosome 14 open reading frame 117|chromosome 14 open reading frame 43" Myb/SANT domain containing 532 2002-11-27 2012-09-25 2016-03-24 2016-03-24 91748 ENSG00000156030 OTTHUMG00000150359 uc001xou.4 BF971739 NM_194278 CCDS9819 Q6PJG2 MGI:2685106 RGD:1306119 +HGNC:3327 ELN elastin protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "WBS|WS|SVAS" "tropoelastin|supravalvular aortic stenosis|Williams-Beuren syndrome" 1986-01-01 2008-08-01 2016-10-05 2006 ENSG00000049540 OTTHUMG00000150229 uc003tzn.5 NM_000501 "CCDS5562|CCDS43598|CCDS43599|CCDS47611|CCDS47612|CCDS64673|CCDS64674|CCDS64675|CCDS64676|CCDS64677|CCDS64678|CCDS75616|CCDS75617" P15502 8096434 MGI:95317 RGD:67394 ELN 130160 121517 +HGNC:3328 ELNL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-08-01 +HGNC:28691 ELOF1 elongation factor 1 homolog protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "MGC4549|ELF1" "elongation factor 1 homolog (ELF1, S. cerevisiae)|elongation factor 1 homolog (S. cerevisiae)" 2005-03-25 2016-02-10 2016-02-10 84337 ENSG00000130165 OTTHUMG00000182034 uc002mse.1 AK001171 NM_032377 CCDS12264 P60002 12477932 MGI:1913376 RGD:1587399 ELOF1 +HGNC:14418 ELOVL1 ELOVL fatty acid elongase 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 Ssc1 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 2001-01-18 2011-05-25 2016-10-05 64834 ENSG00000066322 OTTHUMG00000007422 uc001cjb.5 AK001653 NM_022821 "CCDS485|CCDS57987" Q9BW60 MGI:1858959 RGD:1587151 ELOVL1 611813 +HGNC:14416 ELOVL2 ELOVL fatty acid elongase 2 protein-coding gene gene with protein product Approved 6p24.2 06p24.2 Ssc2 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2 2001-01-18 2011-05-25 2016-10-05 54898 ENSG00000197977 OTTHUMG00000014252 uc003mzp.5 AK000341 XM_011514716 CCDS4518 Q9NXB9 "12371743|16564093" MGI:1858960 RGD:1308605 ELOVL2 611814 +HGNC:44156 ELOVL2-AS1 ELOVL2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p24.2 06p24.2 ELOVL2 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100506409 ENSG00000230314 OTTHUMG00000014251 uc021yln.2 BC038757 NR_038962 +HGNC:18047 ELOVL3 ELOVL fatty acid elongase 3 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 CIG-30 elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3 2002-01-22 2011-05-25 2016-10-05 83401 ENSG00000119915 OTTHUMG00000018951 uc001kut.5 AF292387 NM_152310 CCDS7531 Q9HB03 MGI:1195976 RGD:1307263 ELOVL3 611815 +HGNC:14415 ELOVL4 ELOVL fatty acid elongase 4 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 CT118 cancer/testis antigen 118 "STGD2|STGD3|SCA34" "elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4|spinocerebellar ataxia 34" 2001-01-18 2011-05-25 2016-10-05 6785 ENSG00000118402 OTTHUMG00000015087 uc003pja.5 AF277094 NM_022726 CCDS4992 Q9GZR5 "11138005|24566826" MGI:1933331 RGD:1305630 Mutations of the Elongation of Very Long Chain Fatty Acids-like Protein 4 Gene|http://www.retina-international.org/files/sci-news/elovlmut.htm ELOVL4 605512 121522 +HGNC:21308 ELOVL5 ELOVL fatty acid elongase 5 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "HELO1|dJ483K16.1" SCA38 "ELOVL family member 5, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)|spinocerebellar ataxia 38" 2003-06-12 2011-05-25 2015-02-02 60481 ENSG00000012660 OTTHUMG00000016249 uc003pbr.3 AF052129 NM_021814 "CCDS4951|CCDS56433|CCDS56434|CCDS75470" Q9NYP7 "10970790|25065913" MGI:1916051 RGD:620583 ELOVL5 611805 432003 +HGNC:15829 ELOVL6 ELOVL fatty acid elongase 6 protein-coding gene gene with protein product Approved 4q25 04q25 "FLJ23378|MGC5487|LCE" ELOVL family member 6, elongation of long chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) 2003-06-06 2011-05-25 2014-11-19 79071 ENSG00000170522 OTTHUMG00000132547 uc003hzz.4 AK027031 NM_024090 CCDS3690 Q9H5J4 11567032 MGI:2156528 RGD:7527008 ELOVL6 611546 +HGNC:26292 ELOVL7 ELOVL fatty acid elongase 7 protein-coding gene gene with protein product Approved 5q12.1 05q12.1 FLJ23563 ELOVL family member 7, elongation of long chain fatty acids (yeast) 2004-05-17 2011-05-25 2015-09-11 79993 ENSG00000164181 OTTHUMG00000162254 uc003jsi.5 AK027216 XM_006714695 "CCDS34164|CCDS78013" A1L3X0 19826053 MGI:1921809 RGD:1310560 ELOVL7 614451 +HGNC:18248 ELP2 elongator acetyltransferase complex subunit 2 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "FLJ10879|StIP" STATIP1 "signal transducer and activator of transcription 3 interacting protein 1|elongation protein 2 homolog (S. cerevisiae)" "WD repeat domain containing|Elongator acetyltransferase complex " "362|539" 2003-03-20 2007-04-20 2012-08-08 2016-10-05 55250 ENSG00000134759 OTTHUMG00000132589 uc002kzk.4 AK001741 NM_018255 "CCDS11918|CCDS56065|CCDS56066|CCDS56067|CCDS56068|CCDS56069" Q6IA86 "11714725|10954736" MGI:1889642 RGD:1306419 ELP2 616054 +HGNC:20696 ELP3 elongator acetyltransferase complex subunit 3 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "FLJ10422|KAT9" elongation protein 3 homolog (S. cerevisiae) "Lysine acetyltransferases|Elongator acetyltransferase complex |GCN5 related N-acetyltransferases" "486|539|1134" 2003-03-20 2012-08-08 2014-11-19 55140 ENSG00000134014 OTTHUMG00000102124 uc003xgn.6 NM_018091 "CCDS6065|CCDS64860|CCDS64861|CCDS75717|CCDS75718" Q9H9T3 11714725 MGI:1921445 RGD:2324506 ELP3 612722 objectId:2653 +HGNC:1171 ELP4 elongator acetyltransferase complex subunit 4 protein-coding gene gene with protein product Approved 11p13 11p13 PAXNEB C11orf19 "chromosome 11 open reading frame 19|elongation protein 4 homolog (S. cerevisiae)" Elongator acetyltransferase complex 539 1999-12-14 2002-05-24 2012-08-08 2014-11-19 26610 ENSG00000109911 OTTHUMG00000142919 uc001mtb.5 AJ276005 NM_019040 "CCDS7875|CCDS73271|CCDS73272" Q96EB1 "11889558|11435442" MGI:1925016 RGD:1566052 ELP4 606985 +HGNC:30617 ELP5 elongator acetyltransferase complex subunit 5 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 DERP6 "dermal papilla derived protein 6|S-phase 2 protein" C17orf81 chromosome 17 open reading frame 81 Elongator acetyltransferase complex 539 2006-02-13 2012-08-08 2012-08-08 2014-11-19 23587 ENSG00000170291 OTTHUMG00000177974 uc002gfg.2 BC002762 NM_015362 "CCDS11094|CCDS11095" Q8TE02 22854966 MGI:1859017 RGD:1303303 ELP5 615019 +HGNC:25976 ELP6 elongator acetyltransferase complex subunit 6 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ20211 "TMEM103|C3orf75" "transmembrane protein 103|chromosome 3 open reading frame 75" Elongator acetyltransferase complex 539 2005-12-19 2012-08-08 2012-08-08 2014-11-19 54859 ENSG00000163832 OTTHUMG00000133521 uc003crk.4 AK000218 NM_017713 CCDS43082 Q0PNE2 22854966 MGI:1919349 RGD:1305478 615020 +HGNC:14417 ELSPBP1 epididymal sperm binding protein 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "HE12|E12|EDDM12" epididymal protein 12 2001-01-22 2014-11-19 64100 ENSG00000169393 OTTHUMG00000183138 uc002pht.4 AJ278478 XM_017027130 CCDS12708 Q96BH3 ELSPBP1 607443 +HGNC:30465 EMB embigin protein-coding gene gene with protein product Approved 5q11.1 05q11.1 MGC71745 embigin homolog (mouse) "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2004-11-30 2010-06-24 2014-11-19 133418 ENSG00000170571 OTTHUMG00000131161 uc003jom.4 BC059398 NM_198449 CCDS3953 Q6PCB8 9438341 MGI:95321 RGD:621067 EMB 615669 +HGNC:38661 EMBP1 embigin pseudogene 1 pseudogene pseudogene Approved 1p11.2 01p11.2 2010-07-06 2014-11-19 647121 ENSG00000231752 OTTHUMG00000185035 NR_003955 PGOHUM00000244885 +HGNC:28957 EMC1 ER membrane protein complex subunit 1 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 KIAA0090 KIAA0090 2005-04-05 2012-05-23 2012-05-23 2014-11-18 23065 ENSG00000127463 OTTHUMG00000002497 uc001bbo.5 NM_015047 "CCDS190|CCDS59190|CCDS59191" Q8N766 22119785 MGI:2443696 RGD:1310427 616846 +HGNC:28963 EMC2 ER membrane protein complex subunit 2 protein-coding gene gene with protein product Approved 8q23.1 08q23.1 "KIAA0103|TTC35" tetratricopeptide repeat domain 35 Tetratricopeptide repeat domain containing 769 2004-01-30 2012-05-23 2012-05-23 2016-10-05 9694 ENSG00000104412 OTTHUMG00000164873 uc003ymw.2 BC021667 NM_014673 CCDS6309 Q15006 "7788527|22119785" MGI:1913986 RGD:1310430 607722 +HGNC:23999 EMC3 ER membrane protein complex subunit 3 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 TMEM111 transmembrane protein 111 2005-12-22 2012-05-23 2012-05-23 2014-11-19 55831 ENSG00000125037 OTTHUMG00000128652 uc003bun.4 AF157321 NM_018447 CCDS2594 Q9P0I2 "19797678|22119785" MGI:1913337 RGD:1311566 EMC3 +HGNC:49223 EMC3-AS1 EMC3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 2013-10-09 2013-10-09 442075 ENSG00000180385 OTTHUMG00000155324 NR_103821 +HGNC:28032 EMC4 ER membrane protein complex subunit 4 protein-coding gene gene with protein product Approved 15q14 15q14 "FLJ90746|MGC24415|PIG17" TMEM85 transmembrane protein 85 2006-02-15 2012-05-23 2012-05-23 2014-11-18 51234 ENSG00000128463 OTTHUMG00000129411 uc001zhq.5 BC016348 NM_016454 "CCDS10035|CCDS66732" Q5J8M3 "18586032|22119785" MGI:1915282 RGD:1310905 EMC4 616245 +HGNC:28430 EMC6 ER membrane protein complex subunit 6 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 MGC2963 TMEM93 transmembrane protein 93 2005-12-13 2012-05-23 2012-05-23 2014-11-19 83460 ENSG00000127774 uc002fwf.3 NM_031298 CCDS11033 Q9BV81 22119785 MGI:1913298 RGD:1309231 +HGNC:24301 EMC7 ER membrane protein complex subunit 7 protein-coding gene gene with protein product Approved 15q14 15q14 C11orf3 C15orf24 chromosome 15 open reading frame 24 2004-06-25 2012-05-30 2012-05-30 2014-11-19 56851 ENSG00000134153 OTTHUMG00000129367 uc001zhm.4 AJ245874 NM_020154 CCDS10032 Q9NPA0 "10873569|22119785" MGI:1920274 RGD:1305045 +HGNC:7864 EMC8 ER membrane protein complex subunit 8 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 FAM158B family with sequence similarity 158, member B "C16orf4|NOC4|C16orf2|COX4NB" "chromosome 16 open reading frame 4|neighbor of COX4|chromosome 16 open reading frame 2|COX4 neighbor" 1999-06-02 2012-05-30 2012-05-30 2016-10-05 10328 ENSG00000131148 OTTHUMG00000137647 uc002fjd.4 AF005888 NM_006067 "CCDS10954|CCDS45541" O43402 "10337626|22119785" MGI:1343095 RGD:1311219 604886 +HGNC:20273 EMC9 ER membrane protein complex subunit 9 protein-coding gene gene with protein product Approved 14q12 14q12 CGI-112 "C14orf122|FAM158A" "chromosome 14 open reading frame 122|family with sequence similarity 158, member A" 2003-01-17 2012-05-30 2012-05-30 2014-11-19 51016 ENSG00000100908 OTTHUMG00000028796 uc001wmi.3 BF346999 NM_016049 CCDS9613 Q9Y3B6 22119785 MGI:1934682 RGD:1308113 +HGNC:27609 EMC10 ER membrane protein complex subunit 10 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "INM02|HSS1|HSM1" "hematopoietic signal peptide-containing secreted 1|hematopoietic signal peptide-containing membrane domain-containing 1" C19orf63 chromosome 19 open reading frame 63 2007-07-17 2012-05-30 2012-05-30 2014-11-19 284361 ENSG00000161671 OTTHUMG00000183042 uc002psl.5 BC062607 NM_175063 "CCDS12796|CCDS42594" Q5UCC4 "12975309|22119785" MGI:1916933 RGD:1303214 614545 +HGNC:16041 EMCN endomucin protein-coding gene gene with protein product Approved 4q24 04q24 MUC14 Mucins 648 2006-04-03 2016-10-05 51705 ENSG00000164035 OTTHUMG00000131051 uc003hvr.3 AF205940 NM_016242 "CCDS3655|CCDS54782" Q9ULC0 "11418125|11594763" MGI:1891716 RGD:1303218 EMCN 608350 +HGNC:3331 EMD emerin protein-coding gene gene with protein product Approved Xq28 Xq28 "STA|LEMD5" LEM domain containing 5 Emery-Dreifuss muscular dystrophy LEM domain containing 1087 2001-06-22 2008-07-29 2016-10-12 2010 ENSG00000102119 OTTHUMG00000033186 uc004fkl.4 X82434 NM_000117 CCDS14745 P50402 MGI:108117 RGD:2551 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/EMD|UMD Locus Specific Databases|http://www.umd.be/|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=EMD|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=EMD|LRG_745|http://www.lrg-sequence.org/LRG/LRG_745" EMD 300384 121526 +HGNC:24965 EME1 essential meiotic structure-specific endonuclease 1 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "FLJ31364|MMS4L|SLX2A" SLX2 structure-specific endonuclease subunit homolog A (S. cerevisiae) essential meiotic endonuclease 1 homolog 1 (S. pombe) 2004-01-27 2013-07-03 2015-02-24 146956 ENSG00000154920 OTTHUMG00000164974 uc002iqs.3 BC016470 NM_152463 "CCDS11565|CCDS54141" Q96AY2 12721304 MGI:3576783 RGD:1309067 EME1 610885 +HGNC:27289 EME2 essential meiotic structure-specific endonuclease subunit 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ00151|SLX2B" SLX2 structure-specific endonuclease subunit homolog B (S. cerevisiae) essential meiotic endonuclease 1 homolog 2 (S. pombe) 2004-01-27 2013-07-03 2015-02-24 197342 ENSG00000197774 OTTHUMG00000176706 uc010brw.2 AK074080 NM_001010865 CCDS58404 A4GXA9 12721304 MGI:1919889 RGD:1304924 EME2 610886 +HGNC:16912 EMG1 EMG1, N1-specific pseudouridine methyltransferase protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "C2F|NEP1|Grcc2f" EMG1 nucleolar protein homolog (S. cerevisiae) SPOUT methyltranferase domain containing 1294 2006-01-12 2016-05-11 2016-10-05 10436 ENSG00000268439 OTTHUMG00000168968 uc031ysa.2 U72514 NM_006331 CCDS73430 Q92979 "9074930|11935223|19463982" MGI:1315195 RGD:1307665 611531 201553 +HGNC:18036 EMID1 EMI domain containing 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "EMU1|hEmu1|EMI5" "emilin and multimerin-domain containing protein 1|putative emu1" EMI domain containing 540 2004-03-02 2015-09-11 129080 ENSG00000186998 OTTHUMG00000151013 uc003aem.5 AJ416090 NM_133455 CCDS33630 Q96A84 12221002 MGI:2155091 RGD:1593795 EMID1 608926 +HGNC:19880 EMILIN1 elastin microfibril interfacer 1 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "DKFZp586M121|gp115" EMI domain containing 540 2003-07-16 2016-10-05 11117 ENSG00000138080 OTTHUMG00000097069 uc002rii.5 AF088916 NM_007046 CCDS1733 Q9Y6C2 MGI:1926189 RGD:1311209 EMILIN1 130660 +HGNC:19881 EMILIN2 elastin microfibril interfacer 2 protein-coding gene gene with protein product Approved 18p11.32-p11.31 18p11.32-p11.31 "FLJ33200|FOAP-10" EMI domain containing 540 2003-07-16 2016-10-11 84034 ENSG00000132205 OTTHUMG00000128525 uc002kln.4 AF270513 NM_032048 CCDS11828 Q9BXX0 MGI:2389136 RGD:1305343 EMILIN2 608928 +HGNC:16123 EMILIN3 elastin microfibril interfacer 3 protein-coding gene gene with protein product Approved 20q12 20q12 dJ620E11.4 chromosome 20 open reading frame 130 "C20orf130|EMILIN5" elastin microfibril interfacer 5 EMI domain containing 540 2001-07-17 2004-03-02 2004-03-02 2014-11-18 90187 ENSG00000183798 OTTHUMG00000046304 uc002xjy.2 AL031667 XM_029741 CCDS13316 Q9NT22 12221002 MGI:2389142 RGD:1309607 EMILIN3 608929 +HGNC:3330 EML1 echinoderm microtubule associated protein like 1 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 "EMAP|HuEMAP|ELP79" EMAPL WD repeat domain containing 362 1997-07-11 2002-02-15 2016-10-05 2009 ENSG00000066629 OTTHUMG00000171529 uc001ygs.4 AK023861 NM_001008707 "CCDS32154|CCDS32155" O00423 "9226380|10521658" MGI:1915769 RGD:1306374 EML1 602033 434227 +HGNC:18035 EML2 echinoderm microtubule associated protein like 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "EMAP2|ELP70|EMAP-2" "echinoderm MT-associated protein (EMAP)-like protein 70|microtubule-associated protein like echinoderm EMAP" WD repeat domain containing 362 2002-02-15 2015-09-11 24139 ENSG00000125746 OTTHUMG00000182127 uc002pcn.4 AF103939 NM_012155 "CCDS12670|CCDS54280|CCDS59399" O95834 "11694528|10521658" MGI:1919455 RGD:621066 EML2 +HGNC:48331 EML2-AS1 EML2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.32 19q13.32 C19orf83 chromosome 19 open reading frame 83 2013-11-06 2015-03-18 2015-03-18 2015-03-18 100287177 ENSG00000267757 OTTHUMG00000182128 NR_130728 +HGNC:26666 EML3 echinoderm microtubule associated protein like 3 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "FLJ35827|ELP95" WD repeat domain containing 362 2005-05-17 2015-09-11 256364 ENSG00000149499 OTTHUMG00000149817 uc001ntu.2 AK093146 NM_153265 "CCDS8023|CCDS76415" Q32P44 "15225882|14744259" MGI:2387612 RGD:7630023 EML3 +HGNC:1316 EML4 echinoderm microtubule associated protein like 4 protein-coding gene gene with protein product Approved 2p21 02p21 "ROPP120|ELP120" C2orf2 WD repeat domain containing 362 2000-01-31 2002-02-15 2015-08-27 27436 ENSG00000143924 OTTHUMG00000128603 uc002rsi.3 AF177377 NM_019063 "CCDS1807|CCDS46266" Q9HC35 MGI:1926048 RGD:1304690 EML4 607442 358452 +HGNC:18197 EML5 echinoderm microtubule associated protein like 5 protein-coding gene gene with protein product Approved 14q31.3 14q31.3 "HuEMAP-2|EMAP-2" WD repeat domain containing 362 2002-12-17 2015-08-27 161436 ENSG00000165521 OTTHUMG00000170811 uc059edd.1 AY357725 XM_011536528 CCDS45148 Q05BV3 MGI:2442513 RGD:1303275 EML5 +HGNC:35412 EML6 echinoderm microtubule associated protein like 6 protein-coding gene gene with protein product Approved 2p16.1 02p16.1 FLJ42562 WD repeat domain containing 362 2008-12-05 2015-09-11 400954 ENSG00000214595 OTTHUMG00000152035 uc002ryb.5 XM_001725002 CCDS46286 Q6ZMW3 MGI:2442895 RGD:1561672 EML6 +HGNC:3333 EMP1 epithelial membrane protein 1 protein-coding gene gene with protein product Approved 12p13.1 12p13.1 "TMP|CL-20" 1997-12-05 2015-03-31 2012 ENSG00000134531 OTTHUMG00000168775 uc001rbr.4 U43916 NM_001423 CCDS8660 P54849 "8996089|9126480" MGI:107941 RGD:2552 EMP1 602333 +HGNC:3334 EMP2 epithelial membrane protein 2 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 XMP 1997-12-05 2016-10-05 2013 ENSG00000213853 OTTHUMG00000129752 uc002czx.4 U52100 NM_001424 CCDS10541 P54851 "8996089|10331954|16216233" MGI:1098726 RGD:1359629 EMP2 602334 403061 +HGNC:3335 EMP3 epithelial membrane protein 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 YMP 1997-12-05 2016-10-05 2014 ENSG00000142227 OTTHUMG00000183196 uc002piv.3 U52101 NM_001425 CCDS12715 P54852 "8996089|10331954" MGI:1098729 RGD:621094 EMP3 602335 +HGNC:18071 EMSY EMSY, BRCA2 interacting transcriptional repressor protein-coding gene gene with protein product Approved 11q13.5 11q13.5 C11orf30 chromosome 11 open reading frame 30 EMSY complex 1243 2003-11-26 2015-10-26 2016-02-09 2016-02-09 56946 ENSG00000158636 OTTHUMG00000165282 uc001oxl.4 AF226047 NM_020193 "CCDS8244|CCDS73349|CCDS73350|CCDS73351" Q7Z589 "14651845|22315412" MGI:1924203 RGD:1310712 608574 +HGNC:3339 EMWX episodic muscle weakness, X-linked phenotype phenotype only Approved Xp22.3 Xp22.3 1999-04-15 1999-10-29 10118 10486330 300211 +HGNC:3340 EMX1 empty spiracles homeobox 1 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 empty spiracles homolog 1 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 1994-02-08 2007-02-15 2015-08-25 2016 ENSG00000135638 OTTHUMG00000129778 uc002sin.1 X68879 XM_005264203 CCDS1921 Q04741 7959790 MGI:95387 RGD:1564002 EMX1 600034 8432 +HGNC:3341 EMX2 empty spiracles homeobox 2 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 empty spiracles homolog 2 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 1994-02-08 2007-02-15 2015-08-27 2018 ENSG00000170370 OTTHUMG00000019123 uc001ldh.5 AF301598 NM_004098 "CCDS7601|CCDS53583" Q04743 7959790 MGI:95388 RGD:1564797 EMX2 600035 8433 121529 +HGNC:18511 EMX2OS EMX2 opposite strand/antisense RNA non-coding RNA RNA, long non-coding Approved 10q26.11 10q26.11 "NCRNA00045|EMX2-AS1" non-protein coding RNA 45 "empty spiracles homeobox 2 opposite strand|EMX2 opposite strand (non-protein coding)|EMX2 opposite strand/antisense RNA (non-protein coding)" Long non-coding RNAs 788 2004-02-04 2011-11-14 2012-08-15 2014-10-22 196047 ENSG00000229847 OTTHUMG00000019125 uc001ldg.4 AY117034 NR_002791 12573261 MGI:3052329 607637 Emx2os +HGNC:3342 EN1 engrailed homeobox 1 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 NKL subclass homeoboxes and pseudogenes 519 1989-05-08 2007-02-15 2015-08-25 2019 ENSG00000163064 OTTHUMG00000131401 uc002tlm.4 L12699 NM_001426 CCDS2123 Q05925 8094370 MGI:95389 RGD:1595088 EN1 131290 8434 +HGNC:3343 EN2 engrailed homeobox 2 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 NKL subclass homeoboxes and pseudogenes 519 1988-08-31 2007-02-15 2016-10-05 2020 ENSG00000164778 OTTHUMG00000151354 uc003wmb.3 NM_001427 CCDS5940 P19622 MGI:95390 RGD:1561842 EN2 131310 8435 121531 +HGNC:18271 ENAH enabled homolog (Drosophila) protein-coding gene gene with protein product Approved 1q42.12 01q42.12 "FLJ10773|NDPP1|MENA" mammalian enabled ENAH/VASPs 946 2002-08-06 2016-10-05 55740 ENSG00000154380 OTTHUMG00000037742 uc001hpc.2 AK001635 NM_018212 "CCDS31040|CCDS31041" Q8N8S7 "1420303|16494957" MGI:108360 RGD:1307666 ENAH 609061 +HGNC:3344 ENAM enamelin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 AIH2 amelogenesis imperfecta 2, hypocalcification (autosomal dominant) 1999-05-17 2014-11-19 10117 ENSG00000132464 OTTHUMG00000129914 uc011caw.2 AF125373 NM_031889 CCDS3544 Q9NRM1 11978766 MGI:1333772 RGD:1306796 ENAM 606585 121533 +HGNC:3345 ENC1 ectodermal-neural cortex 1 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "PIG10|ENC-1|TP53I10|KLHL37" kelch-like family member 37 NRPB "ectodermal-neural cortex 1 (with BTB-like domain)|ectodermal-neural cortex 1 (with BTB domain)" "Kelch like|BTB domain containing" "617|861" 1998-09-30 2016-01-21 2016-10-05 8507 ENSG00000171617 OTTHUMG00000102059 uc031skd.1 AF059611 NM_003633 "CCDS4021|CCDS58958" O14682 "9305847|9566959" MGI:109610 RGD:1303152 ENC1 605173 +HGNC:29129 ENDOD1 endonuclease domain containing 1 protein-coding gene gene with protein product Approved 11q21 11q21 KIAA0830 2006-02-03 2014-11-19 23052 ENSG00000149218 OTTHUMG00000167835 uc001pfh.4 BC026191 NM_015036 CCDS41699 O94919 10048485 MGI:1919196 RGD:1310444 ENDOD1 +HGNC:3346 ENDOG endonuclease G protein-coding gene gene with protein product Approved 9q34.11 09q34.11 1994-09-29 2016-10-05 2021 ENSG00000167136 OTTHUMG00000020763 uc004bwc.4 X79444 NM_004435 CCDS6912 Q14249 7789991 MGI:1261433 RGD:1310763 ENDOG 600440 +HGNC:14369 ENDOU endonuclease, poly(U) specific protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "PP11|P11|PRSS26" endonuclease, polyU-specific Proteases, serine 738 2010-02-05 2015-11-18 2016-10-05 8909 ENSG00000111405 OTTHUMG00000169670 uc001rpu.3 M32402 NM_006025.2 "CCDS8754|CCDS53784|CCDS53785" P21128 "2350438|1710108|15755742|18936097" MGI:97746 RGD:1593011 ENDOU 606720 +HGNC:26640 ENDOV endonuclease V protein-coding gene gene with protein product Approved 17q25.3 17q25.3 FLJ35220 2011-05-05 2011-05-05 284131 ENSG00000173818 OTTHUMG00000164638 uc021ueo.2 NM_173627 "CCDS54172|CCDS54173|CCDS54174" Q8N8Q3 12853604 MGI:2444688 RGD:1562414 ENDOV +HGNC:3349 ENG endoglin protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "END|HHT1|CD105" "ORW1|ORW" Osler-Rendu-Weber syndrome 1 CD molecules 471 1993-03-03 2008-09-04 2016-10-12 2022 ENSG00000106991 OTTHUMG00000020723 uc004bsk.6 AF035753 NM_001278138 "CCDS6880|CCDS48029|CCDS75906" P17813 "8404038|10548503" MGI:95392 RGD:1593188 "Hereditary Hemorrhagic Telangiectasia (HHT) Mutation Database|http://www.hhtmutation.org/|LRG_589|http://www.lrg-sequence.org/LRG/LRG_589" ENG 131195 121536 objectId:2895 CD105 +HGNC:24622 ENGASE endo-beta-N-acetylglucosaminidase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 FLJ21865 "Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase|Di-N-acetylchitobiosyl beta-N-acetylglucosaminidase" 2009-03-03 2014-11-19 64772 ENSG00000167280 OTTHUMG00000167714 uc002jwv.5 AF512564 NM_022759 CCDS42394 Q8NFI3 "12114544|18586680" MGI:2443788 RGD:1310868 ENGASE 611898 3.2.1.96 +HGNC:24838 ENHO energy homeostasis associated protein-coding gene gene with protein product Approved 9p13.3 09p13.3 UNQ470 adropin C9orf165 chromosome 9 open reading frame 165 2006-05-15 2008-12-10 2008-12-10 2014-11-19 375704 ENSG00000168913 OTTHUMG00000159589 uc003zun.2 BC022101 NM_198573 CCDS43795 Q6UWT2 "12975309|19041763" MGI:1916888 RGD:6487582 ENHO +HGNC:25246 ENKD1 enkurin domain containing 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 DKFZP434A1319 C16orf48 chromosome 16 open reading frame 48 2005-02-11 2012-10-09 2012-10-09 2014-11-18 84080 ENSG00000124074 OTTHUMG00000137550 uc002etw.2 BC008284 NM_032140 CCDS10844 Q9H0I2 11230166 MGI:2142593 RGD:1307357 +HGNC:28388 ENKUR enkurin, TRPC channel interacting protein protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "MGC26778|enkurin|CFAP106" C10orf63 chromosome 10 open reading frame 63 2004-01-22 2009-04-28 2009-04-28 2016-10-05 219670 ENSG00000151023 OTTHUMG00000017827 uc001isg.2 AK095021 NM_145010 "CCDS7146|CCDS73075" Q8TC29 "17217053|15385169" MGI:1918483 RGD:1309839 ENKUR 611025 +HGNC:3350 ENO1 enolase 1 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 "PPH|MBP-1" alpha-enolase "ENO1L1|MPB1" enolase 1, (alpha) 1989-04-21 2016-04-05 2016-10-05 2023 ENSG00000074800 OTTHUMG00000001773 uc001apj.3 BC022545 NM_001428 CCDS97 P06733 "9653645|9691177" MGI:95393 RGD:2553 ENO1 172430 4.2.1.11 +HGNC:40214 ENO1-AS1 ENO1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.23 01p36.23 ENO1 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100505975 ENSG00000230679 OTTHUMG00000001779 uc021oft.2 NR_038351 +HGNC:41331 ENO1-IT1 ENO1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p36.23 01p36.23 ENO1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 106480431 ENSG00000236269 OTTHUMG00000001778 uc057bzw.1 +HGNC:3352 ENO1P1 enolase 1 pseudogene 1 pseudogene pseudogene Approved 1q43 01q43 ENO1P "enolase 1, (alpha) pseudogene|enolase 1, (alpha) pseudogene 1" 1992-11-04 2010-03-11 2016-04-28 2016-04-28 2025 ENSG00000244457 OTTHUMG00000039951 X15277 NG_001115 2132962 +HGNC:37943 ENO1P2 enolase 1 pseudogene 2 pseudogene pseudogene Approved 15q26.1 15q26.1 enolase 1, (alpha) pseudogene 2 2010-03-11 2016-04-28 2016-04-28 100419098 ENSG00000258739 OTTHUMG00000171740 NG_022137 PGOHUM00000247276 +HGNC:37944 ENO1P3 enolase 1 pseudogene 3 pseudogene pseudogene Approved 3q21.2 03q21.2 enolase 1, (alpha) pseudogene 3 2010-03-11 2016-04-28 2016-04-28 100419069 ENSG00000243986 OTTHUMG00000159521 NG_022217 PGOHUM00000237744 +HGNC:37945 ENO1P4 enolase 1 pseudogene 4 pseudogene pseudogene Approved 2q33.1 02q33.1 enolase 1, (alpha) pseudogene 4 2010-03-11 2016-04-28 2016-04-28 100885799 ENSG00000241790 OTTHUMG00000154527 NG_032696 +HGNC:3353 ENO2 enolase 2 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "gamma-enolase|neuronal enriched enolase" enolase 2 (gamma, neuronal) 2001-06-22 2016-04-28 2016-04-28 2026 ENSG00000111674 OTTHUMG00000168967 uc009zfi.2 M22349 NM_001975 CCDS8570 P09104 MGI:95394 RGD:2554 ENO2 131360 4.2.1.11 +HGNC:3354 ENO3 enolase 3 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "beta-enolase|muscle enriched enolase" "enolase 3, (beta, muscle)|enolase 3 (beta, muscle)" 1990-03-21 2016-04-28 2016-04-28 2027 ENSG00000108515 OTTHUMG00000099394 uc002gac.5 X16504 XM_017024346 "CCDS11062|CCDS54070" P13929 MGI:95395 RGD:2555 ENO3 131370 121551 4.2.1.11 +HGNC:31670 ENO4 enolase family member 4 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 AC023283.3 C10orf134 chromosome 10 open reading frame 134 2004-05-27 2009-12-15 2009-12-15 2016-04-12 387712 ENSG00000188316 OTTHUMG00000019113 uc021pzj.1 NM_001242699 CCDS73206 A6NNW6 23446454 MGI:2441717 RGD:1308333 ENO4 131375 +HGNC:24599 ENOPH1 enolase-phosphatase 1 protein-coding gene gene with protein product Approved 4q21.22 04q21.22 "MASA|E1|mtnC" "Enolase-phosphatase E1|acireductone synthase" HAD Asp-based non-protein phosphatases 1045 2007-01-26 2016-10-05 58478 ENSG00000145293 OTTHUMG00000130295 uc003hmv.4 NM_021204 "CCDS3594|CCDS75154" Q9UHY7 15843022 MGI:1915120 RGD:1309016 ENOPH1 3.1.3.77 +HGNC:30365 ENOSF1 enolase superfamily member 1 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 "HSRTSBETA|rTS|TYMSAS" 2005-01-26 2014-11-19 55556 ENSG00000132199 OTTHUMG00000131470 uc002kku.5 X67098 NM_017512 "CCDS11822|CCDS11823|CCDS45821" Q7L5Y1 14508106 ENOSF1 607427 +HGNC:25474 ENOX1 ecto-NOX disulfide-thiol exchanger 1 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "FLJ10094|PIG38|CNOX|cCNOX" ecto-NADPH oxidase disulfide-thiol exchanger 1 RNA binding motif containing 725 2007-03-23 2016-09-28 55068 ENSG00000120658 OTTHUMG00000016818 uc001uzc.5 EF432052 NM_017993 CCDS9389 Q8TC92 11360993 MGI:2444896 RGD:1306118 ENOX1 610914 +HGNC:42396 ENOX1-AS1 ENOX1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 ENOX1 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100874129 ENSG00000233821 OTTHUMG00000016819 uc058wrp.1 +HGNC:42397 ENOX1-AS2 ENOX1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 ENOX1 antisense RNA 2 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100874130 ENSG00000238189 OTTHUMG00000016817 uc058wro.1 NR_120399 +HGNC:2259 ENOX2 ecto-NOX disulfide-thiol exchanger 2 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "APK1|tNOX" "tumor-associated NADH oxidase|ecto-NADPH oxidase disulfide-thiol exchanger 2" COVA1 cytosolic ovarian carcinoma antigen 1 RNA binding motif containing 725 1999-11-22 2007-03-23 2007-03-23 2016-10-05 10495 ENSG00000165675 OTTHUMG00000022401 uc004evx.5 AF207881 NM_182314 "CCDS14626|CCDS14627" Q16206 "8150545|11888291" MGI:2384799 RGD:1563643 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ENOX2 ENOX2 300282 +HGNC:3355 ENPEP glutamyl aminopeptidase protein-coding gene gene with protein product Approved 4q25 04q25 "gp160|CD249" glutamyl aminopeptidase (aminopeptidase A) "Aminopeptidases|CD molecules" "104|471" 1993-04-15 2016-01-06 2016-01-06 2028 ENSG00000138792 OTTHUMG00000132546 uc003iab.5 L12468 XM_017007877 CCDS3691 Q07075 9268642 MGI:106645 RGD:621228 ENPEP 138297 M01.003 objectId:1568 CD249 3.4.11.7 +HGNC:3356 ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "PC-1|PCA1" "NPPS|M6S1|PDNP1" 1992-12-08 2016-10-05 5167 ENSG00000197594 OTTHUMG00000015572 uc011ecf.2 M57736 NM_006208 CCDS5150 P22413 1315502 MGI:97370 RGD:628825 ENPP1 173335 121553 "3.1.4.1|3.6.1.9" +HGNC:3357 ENPP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "ATX|PD-IALPHA" autotaxin PDNP2 1995-08-10 2008-08-01 2015-09-11 5168 ENSG00000136960 OTTHUMG00000164995 uc003yos.3 D45421 XM_017013571 "CCDS6329|CCDS34936|CCDS47914|CCDS83317" Q13822 8586446 MGI:1321390 RGD:69298 ENPP2 601060 objectId:2901 "3.1.4.1|3.6.1.9" +HGNC:3358 ENPP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "PD-IBETA|gp130RB13-6|B10|CD203c" PDNP3 CD molecules 471 1995-08-10 2016-10-05 5169 ENSG00000154269 OTTHUMG00000016292 uc003qcu.5 AF005632 XM_017010932 CCDS5148 O14638 9344668 MGI:2143702 RGD:708511 ENPP3 602182 CD203c "3.1.4.1|3.6.1.9" +HGNC:3359 ENPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative) protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "NPP4|KIAA0879" 2000-08-24 2010-06-24 2016-10-05 22875 ENSG00000001561 OTTHUMG00000014779 uc003oxy.4 AB020686 NM_014936 CCDS34468 Q9Y6X5 11027689 MGI:2682634 RGD:1308689 ENPP4 617000 +HGNC:13717 ENPP5 ectonucleotide pyrophosphatase/phosphodiesterase 5 (putative) protein-coding gene gene with protein product Approved 6p21.1 06p21.1 2000-10-18 2010-06-24 2016-10-05 59084 ENSG00000112796 OTTHUMG00000014781 uc003oya.2 AL035701 XM_011514786 CCDS4915 Q9UJA9 11027689 MGI:1933830 RGD:1359199 ENPP5 617001 +HGNC:23409 ENPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 MGC33971 2003-11-25 2014-11-19 133121 ENSG00000164303 OTTHUMG00000160617 uc003iwc.3 AK057370 NM_153343 CCDS3834 Q6UWR7 MGI:2445171 RGD:1311645 ENPP6 616983 +HGNC:23764 ENPP7 ectonucleotide pyrophosphatase/phosphodiesterase 7 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "alk-SMase|NPP7" alkaline sphingomyelinase 2004-04-29 2014-11-18 339221 ENSG00000182156 OTTHUMG00000177462 uc002jxa.5 AY230663 NM_178543 CCDS11763 Q6UWV6 12885774 MGI:3027917 RGD:1359324 ENPP7 616997 +HGNC:48699 ENPP7P1 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 1 pseudogene pseudogene Approved 8p23.1 08p23.1 2013-06-06 2014-11-18 100421823 ENSG00000249188 OTTHUMG00000160501 NG_026083 PGOHUM00000303442 +HGNC:48685 ENPP7P2 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 2 pseudogene pseudogene Approved 3p12.3 03p12.3 2013-06-06 2014-11-18 100421813 ENSG00000239959 OTTHUMG00000158849 NG_025593 PGOHUM00000299067 +HGNC:48686 ENPP7P3 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 3 pseudogene pseudogene Approved 3q22.1 03q22.1 2013-06-06 2014-11-18 106481658 ENSG00000248618 OTTHUMG00000159714 NG_044896 PGOHUM00000299178 +HGNC:48687 ENPP7P4 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4 pseudogene pseudogene Approved 3q21.2 03q21.2 2013-06-06 2014-11-18 100421816 ENSG00000241278 OTTHUMG00000159567 NG_025738 PGOHUM00000299570 +HGNC:48688 ENPP7P5 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 5 pseudogene pseudogene Approved 12p13.31 12p13.31 2013-06-06 2014-11-18 106480674 ENSG00000256589 OTTHUMG00000168662 NG_043185 PGOHUM00000291210 +HGNC:48698 ENPP7P6 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 6 pseudogene pseudogene Approved 8p23.1 08p23.1 2013-06-06 2013-06-06 2014-11-18 107133511 ENSG00000255549 OTTHUMG00000165463 NG_046666 PGOHUM00000303102 +HGNC:48690 ENPP7P7 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 7 pseudogene pseudogene Approved 11q13.2 11q13.2 2013-06-06 2014-11-18 100421859 ENSG00000273819 OTTHUMG00000187771 NG_024380 PGOHUM00000290572 +HGNC:48691 ENPP7P8 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 8 pseudogene pseudogene Approved 11q13.4 11q13.4 2013-06-06 2014-11-18 100421860 ENSG00000255319 OTTHUMG00000167461 NG_024528 PGOHUM00000291020 +HGNC:48692 ENPP7P9 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 9 pseudogene pseudogene Approved 4p16.3 04p16.3 2013-06-06 2014-11-18 100421803 ENSG00000250476 OTTHUMG00000160181 NG_025078 PGOHUM00000299741 +HGNC:48693 ENPP7P10 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 10 pseudogene pseudogene Approved 4p16.1 04p16.1 2013-06-06 2014-11-18 100421805 ENSG00000249767 OTTHUMG00000160099 NG_025193 PGOHUM00000300126 +HGNC:48694 ENPP7P11 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 11 pseudogene pseudogene Approved 4p16.1 04p16.1 2013-06-06 2014-11-18 100421806 ENSG00000250942 OTTHUMG00000160244 NG_025195 PGOHUM00000300145 +HGNC:48697 ENPP7P12 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 12 pseudogene pseudogene Approved 8p23.1 08p23.1 2013-06-06 2014-11-18 106480230 ENSG00000254527 OTTHUMG00000165299 NG_043733 PGOHUM00000303094 +HGNC:48696 ENPP7P13 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13 pseudogene pseudogene Approved 16p11.2 16p11.2 DUNQU1 2013-06-06 2014-11-18 104644205 ENSG00000261580 OTTHUMG00000176353 JF934746 NR_130772 24141781 PGOHUM00000293817 +HGNC:51387 ENPP7P14 ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 14 pseudogene pseudogene Approved 16p13.3 16p13.3 2014-11-18 2014-11-18 106481720 ENSG00000273963 OTTHUMG00000187875 NG_043377 PGOHUM00000293410 +HGNC:3360 ENSA endosulfine alpha protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "MGC4319|MGC8394|MGC78563|ARPP-19e" 1998-08-21 2015-09-11 2029 ENSG00000143420 OTTHUMG00000035004 uc001eve.4 X99906 NM_207042 "CCDS958|CCDS959|CCDS960|CCDS961|CCDS962|CCDS963|CCDS964|CCDS965" O43768 9653196 MGI:1891189 RGD:62007 ENSA 603061 +HGNC:16588 ENSAP1 endosulfine alpha pseudogene 1 pseudogene pseudogene Approved 20p12.1 20p12.1 dJ822J19.1 ENSAP endosulfine alpha pseudogene 2001-09-17 2009-11-25 2009-11-25 2014-11-19 170511 ENSG00000224274 OTTHUMG00000031923 AL050324 NG_001035 PGOHUM00000247449 +HGNC:20011 ENSAP2 endosulfine alpha pseudogene 2 pseudogene pseudogene Approved 14q31.1 14q31.1 2003-01-13 2014-11-19 319114 ENSG00000259032 OTTHUMG00000171388 NG_002495 PGOHUM00000247876 +HGNC:37946 ENSAP3 endosulfine alpha pseudogene 3 pseudogene pseudogene Approved 2q35 02q35 2010-03-12 2014-11-19 100128203 ENSG00000177261 OTTHUMG00000154772 NG_023446 PGOHUM00000241105 +HGNC:26352 ENTHD1 ENTH domain containing 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 FLJ25421 2006-06-26 2015-08-25 150350 ENSG00000176177 OTTHUMG00000151098 uc003ayg.3 AK093154 NM_152512 CCDS13998 Q8IYW4 12477932 MGI:2686088 RGD:1587874 ENTHD1 +HGNC:3363 ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "NTPDase-1|ATPDase|SPG64" CD39 CD molecules 471 1994-12-09 2014-11-19 953 ENSG00000138185 OTTHUMG00000018818 uc001klh.5 S73813 NM_001776 "CCDS7444|CCDS53556|CCDS53557|CCDS53558|CCDS41554" P49961 "9226376|24482476" MGI:102805 RGD:69265 ENTPD1 601752 403364 objectId:2888 CD39 +HGNC:45203 ENTPD1-AS1 ENTPD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q24.1 10q24.1 2013-03-07 2013-03-07 728558 ENSG00000226688 OTTHUMG00000018822 uc001klg.3 NR_038444 +HGNC:3364 ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 NTPDase-2 "CD39-like-1|ecto-ATPase" CD39L1 1998-02-09 2016-10-05 954 ENSG00000054179 OTTHUMG00000020953 uc004ckw.3 U91510 NM_203468 "CCDS7025|CCDS7026" Q9Y5L3 9271669 MGI:1096863 RGD:69266 ENTPD2 602012 objectId:2889 +HGNC:3365 ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "NTPDase-3|HB6" CD39L3 1998-03-20 2016-10-05 956 ENSG00000168032 OTTHUMG00000131390 uc003ckd.5 AF039917 NM_001248 "CCDS2691|CCDS74919" O75355 9676430 MGI:1321386 RGD:631326 ENTPD3 603161 +HGNC:26710 ENTPD3-AS1 ENTPD3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.1 03p22.1 FLJ36665 ENTPD3 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 285266 ENSG00000223797 OTTHUMG00000156074 uc003cke.5 NR_040100 12477932 +HGNC:14573 ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "LALP70|LAP70|KIAA0392|NTPDase-4|UDPase" LYSAL1 lysosomal apyrase-like 1 2001-05-08 2004-09-22 2004-09-22 2015-09-11 9583 ENSG00000197217 OTTHUMG00000097852 uc003xdl.4 AJ131358 NM_004901 "CCDS6041|CCDS47827" Q9Y227 "10393803|9205841" "MGI:1914714|MGI:5435040" RGD:1309511 ENTPD4 607577 +HGNC:3367 ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 NTPDase-5 "CD39L4|PCPH" proto-oncogene CPH 1998-03-23 2003-10-03 2016-07-27 957 ENSG00000187097 OTTHUMG00000171201 uc010tuo.3 AF039918 NM_001249 "CCDS9825|CCDS81825" O75356 "9271669|9676430" MGI:1321385 RGD:735219 ENTPD5 603162 +HGNC:3368 ENTPD6 ectonucleoside triphosphate diphosphohydrolase 6 (putative) protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "NTPDase-6|dJ738P15.3" "CD39L2|IL6ST2" interleukin 6 signal transducer-2 1998-03-20 2010-06-24 2016-04-05 955 ENSG00000197586 OTTHUMG00000032116 uc002wuj.3 AF039916 NM_001322387 "CCDS13170|CCDS46586|CCDS82603|CCDS82604" O75354 9676430 MGI:1202295 RGD:619725 ENTPD6 603160 3.6.1.6 +HGNC:19745 ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "LALP1|FLJ30978" 2004-02-17 2016-10-05 57089 ENSG00000198018 OTTHUMG00000018888 uc001kqa.5 AF269255 NM_020354 CCDS7480 Q9NQZ7 11278936 MGI:2135885 RGD:1310638 ENTPD7 616753 +HGNC:24860 ENTPD8 ectonucleoside triphosphate diphosphohydrolase 8 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "UNQ2492|NTPDase-8" GLSR2492 2005-04-26 2014-11-19 377841 ENSG00000188833 OTTHUMG00000131831 uc004cmw.3 AY359088 NM_198585 "CCDS7043|CCDS43913" Q5MY95 12975309 MGI:1919340 RGD:1561793 ENTPD8 616748 +HGNC:3369 ENUR1 enuresis, nocturnal 1 phenotype phenotype only Approved 13q13-q14.3 13q13-q14.3 1995-10-11 2008-06-30 2031 7670476 600631 +HGNC:3370 ENUR2 enuresis, nocturnal 2 phenotype phenotype only Approved 12q13-q21 12q13-q21 1995-10-11 2008-07-03 2032 600808 +HGNC:24449 ENY2 ENY2, transcription and export complex 2 subunit protein-coding gene gene with protein product Approved 8q23.1 08q23.1 "DC6|FLJ20480|Sus1" enhancer of yellow 2 homolog (Drosophila) "SAGA complex|Transcription and export complex 2" "1059|1276" 2005-04-29 2016-05-23 2016-05-23 56943 ENSG00000120533 OTTHUMG00000164933 uc003ync.4 NM_020189 "CCDS43762|CCDS55270" Q9NPA8 11438676 MGI:1919286 RGD:1596439 ENY2 +HGNC:28526 EOGT EGF domain specific O-linked N-acetylglucosamine transferase protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "AER61|FLJ33770" AER61 glycosyltransferase C3orf64 "chromosome 3 open reading frame 64|EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase" O-linked N-acetylglucosaminyltransferases 446 2006-03-08 2012-05-21 2016-04-04 2016-04-04 285203 ENSG00000163378 OTTHUMG00000156279 uc003dnl.5 AK091089 NM_173654 "CCDS2908|CCDS63684" Q5NDL2 22310717 MGI:2141669 RGD:1359357 EOGT 614789 331958 2.4.1.255 +HGNC:3372 EOMES eomesodermin protein-coding gene gene with protein product Approved 3p24.1 03p24.1 TBR2 T-box brain2 eomesodermin (Xenopus laevis) homolog T-boxes 766 1998-09-15 2010-06-24 2014-11-19 8320 ENSG00000163508 OTTHUMG00000130570 uc003cdx.5 BC025363 NM_005442 "CCDS2646|CCDS63585|CCDS63584" O95936 "9888994|9434949" MGI:1201683 RGD:1359706 EOMES 604615 181116 +HGNC:3373 EP300 E1A binding protein p300 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "p300|KAT3B" histone acetyltransferase p300 "Zinc fingers ZZ-type|Lysine acetyltransferases" "91|486" 1998-07-31 2015-09-11 2033 ENSG00000100393 OTTHUMG00000150937 uc003azl.6 U01877 NM_001429 CCDS14010 Q09472 7523245 MGI:1276116 RGD:620036 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=EP300 EP300 602700 121560 objectId:2735 +HGNC:50504 EP300-AS1 EP300 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q13.2 22q13.2 2014-05-12 2014-05-12 101927279 ENSG00000231993 OTTHUMG00000150941 NR_110514 +HGNC:11958 EP400 E1A binding protein p400 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "CAGH32|KIAA1498|P400|KIAA1818|DKFZP434I225" TNRC12 trinucleotide repeat containing 12 "Myb/SANT domain containing|Trinucleotide repeat containing" "532|775" 2000-01-27 2002-02-08 2002-02-05 2016-04-25 57634 ENSG00000183495 OTTHUMG00000187346 uc001ujn.3 U80743 NM_015409 CCDS31929 Q96L91 "9225980|11509179" MGI:1276124 RGD:1304733 EP400 606265 +HGNC:26602 EP400NL EP400 N-terminal like other unknown Approved 12q24.33 12q24.33 FLJ33915 2006-02-10 2014-10-06 347918 ENSG00000185684 OTTHUMG00000168251 uc001ujs.5 AK091234 NM_182613 Q6ZTU2 12477932 EP400NL +HGNC:3374 EPAS1 endothelial PAS domain protein 1 protein-coding gene gene with protein product Approved 2p21 02p21 "MOP2|PASD2|HIF2A|HLF|bHLHe73" HIF-1 alpha-like factor Basic helix-loop-helix proteins 420 1998-05-29 2016-10-03 2034 ENSG00000116016 OTTHUMG00000128818 uc002ruv.3 U81984 NM_001430 CCDS1825 Q99814 "9000051|9079689|18378852" MGI:109169 RGD:68404 EPAS1 603349 183913 +HGNC:3377 EPB41 erythrocyte membrane protein band 4.1 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 4.1R EL1 elliptocytosis 1, RH-linked "Erythrocyte membrane protein band 4.1|FERM domain containing" "951|1293" 1986-01-01 2014-05-09 2016-10-05 2035 ENSG00000159023 OTTHUMG00000003644 uc001brm.2 BC039079 NM_203342 "CCDS330|CCDS331|CCDS332|CCDS53288|CCDS53289" P11171 9828140 MGI:95401 RGD:1564762 EPB41 130500 121563 +HGNC:3378 EPB41L1 erythrocyte membrane protein band 4.1 like 1 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "KIAA0338|4.1N" "Erythrocyte membrane protein band 4.1|FERM domain containing" "951|1293" 1997-11-27 2016-04-01 2016-10-05 2036 ENSG00000088367 OTTHUMG00000032378 uc002xfb.4 AB002336 NM_012156 "CCDS13271|CCDS13272|CCDS58771|CCDS58770" Q9H4G0 "9570967|9828140" MGI:103010 RGD:71087 EPB41L1 602879 293091 +HGNC:3379 EPB41L2 erythrocyte membrane protein band 4.1 like 2 protein-coding gene gene with protein product Approved 6q23.1-q23.2 06q23.1-q23.2 4.1-G "Erythrocyte membrane protein band 4.1|FERM domain containing" "951|1293" 1998-06-04 2016-04-01 2016-10-11 2037 ENSG00000079819 OTTHUMG00000015560 uc003qch.3 AF027299 XM_017010349 "CCDS5141|CCDS47474|CCDS56450|CCDS59037" O43491 "9598318|9828140" MGI:103009 RGD:1563977 EPB41L2 603237 +HGNC:3380 EPB41L3 erythrocyte membrane protein band 4.1 like 3 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 "DAL1|KIAA0987|4.1B" "Erythrocyte membrane protein band 4.1|FERM domain containing" "951|1293" 1998-12-16 2016-04-01 2016-10-05 23136 ENSG00000082397 OTTHUMG00000131562 uc060naf.2 AB023204 NM_012307 "CCDS11838|CCDS62381|CCDS62382|CCDS82236|CCDS82237" Q9Y2J2 "9828140|9892180" MGI:103008 RGD:71089 EPB41L3 605331 +HGNC:13278 EPB41L4A erythrocyte membrane protein band 4.1 like 4A protein-coding gene gene with protein product Approved 5q22.1-q22.2 05q22.1-q22.2 NBL4 FERM domain containing 1293 2002-11-27 2016-10-11 64097 ENSG00000129595 OTTHUMG00000162902 uc063fzu.1 AB030240 XM_011543531 CCDS43350 Q9HCS5 10874211 MGI:103007 RGD:1306034 EPB41L4A 612141 +HGNC:30749 EPB41L4A-AS1 EPB41L4A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q22.1 05q22.1 TIGA1 transcript induced by growth arrest 1 "C5orf26|NCRNA00219" "chromosome 5 open reading frame 26|non-protein coding RNA 219|EPB41L4A antisense RNA 1 (non-protein coding)" 2006-07-31 2011-08-11 2012-08-15 2016-10-05 114915 ENSG00000224032 OTTHUMG00000128803 uc003kpq.3 AB048207 NR_015370 9490301 +HGNC:25643 EPB41L4A-AS2 EPB41L4A antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 5q22.2 05q22.2 FLJ11235 2013-07-26 2013-07-26 2015-02-02 54508 ENSG00000278921 OTTHUMG00000169519 NR_027706 +HGNC:19818 EPB41L4B erythrocyte membrane protein band 4.1 like 4B protein-coding gene gene with protein product Approved 9q31.3 09q31.3 EHM2 FERM domain containing 1293 2002-11-27 2016-10-05 54566 ENSG00000095203 OTTHUMG00000020470 uc004bdz.3 AB032179 NM_018424 "CCDS43859|CCDS43860" Q9H329 10783258 MGI:1859149 RGD:1562988 EPB41L4B 610340 +HGNC:19819 EPB41L5 erythrocyte membrane protein band 4.1 like 5 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "KIAA1548|FLJ12957|BE37|YMO1|YRT" yurt homolog (Drosophila) FERM domain containing 1293 2002-11-27 2015-09-11 57669 ENSG00000115109 OTTHUMG00000131433 uc002tmg.4 AK023019 NM_020909 "CCDS2130|CCDS54392|CCDS54393|CCDS82506" Q9HCM4 MGI:103006 RGD:1311366 EPB41L5 611730 +HGNC:3381 EPB42 erythrocyte membrane protein band 4.2 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 "PA|MGC116735|MGC116737" Erythrocyte surface protein band 4.2 Transglutaminases 773 1991-05-21 2016-10-05 2038 ENSG00000166947 OTTHUMG00000130701 uc001zra.5 M60298 NM_000119 "CCDS10093|CCDS45249" P16452 1284644 MGI:95402 RGD:1305306 EPB42 177070 159566 +HGNC:19876 EPC1 enhancer of polycomb homolog 1 protein-coding gene gene with protein product Approved 10p11.22 10p11.22 Epl1 enhancer of polycomb homolog 1 (Drosophila) 2002-11-28 2016-02-01 2016-10-05 80314 ENSG00000120616 OTTHUMG00000017925 uc001iwh.3 AF277374 XR_001747214 "CCDS7172|CCDS60511|CCDS73083" Q9H2F5 10976108 MGI:1278322 RGD:2324280 EPC1 610999 +HGNC:24543 EPC2 enhancer of polycomb homolog 2 protein-coding gene gene with protein product Approved 2q23.1 02q23.1 DKFZP566F2124 enhancer of polycomb homolog 2 (Drosophila) 2004-05-04 2016-02-01 2016-10-05 26122 ENSG00000135999 OTTHUMG00000153739 uc010zbt.3 AF286904 NM_015630 CCDS46422 Q52LR7 MGI:1278321 RGD:1307271 EPC2 611000 +HGNC:11529 EPCAM epithelial cell adhesion molecule protein-coding gene gene with protein product Approved 2p21 02p21 "Ly74|TROP1|GA733-2|EGP34|EGP40|EGP-2|KSA|CD326|Ep-CAM|HEA125|KS1/4|MK-1|MH99|MOC31|323/A3|17-1A|TACST-1|CO-17A|ESA" "M4S1|MIC18|TACSTD1" "antigen identified by monoclonal antibody AUA1|tumor-associated calcium signal transducer 1" CD molecules 471 1995-10-02 2008-12-16 2008-12-16 2016-10-12 4072 ENSG00000119888 OTTHUMG00000128853 uc002rvx.4 M33011 NM_002354 CCDS1833 P16422 "8382772|11306819" MGI:106653 RGD:621365 "Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=EPCAM|LRG_215|http://www.lrg-sequence.org/LRG/LRG_215" EPCAM 185535 226018 CD326 +HGNC:17572 EPDR1 ependymin related 1 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "MERP-1|MERP1|UCC1|EPDR" ependymin related protein 1 (zebrafish) 2005-02-09 2013-07-31 2016-04-25 54749 ENSG00000086289 OTTHUMG00000102187 uc003tfp.5 BC018299 NM_017549 "CCDS5454|CCDS59051|CCDS59052" Q9UM22 "11749721|11248421" MGI:2145369 RGD:1359161 EPDR1 +HGNC:29331 EPG5 ectopic P-granules autophagy protein 5 homolog protein-coding gene gene with protein product Approved 18q12.3-q21.1 18q12.3-q21.1 hEPG5 KIAA1632 "KIAA1632|ectopic P-granules autophagy protein 5 homolog (C. elegans)" 2005-01-06 2011-03-02 2016-06-29 2016-10-11 57724 ENSG00000152223 OTTHUMG00000132626 uc002lbm.4 AK023817 NM_020964 CCDS11926 Q9HCE0 "20550938|23222957" MGI:1918673 RGD:1306286 EPG5 615068 323437 +HGNC:17470 EPGN epithelial mitogen protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "epigen|EPG|PRO9904|ALGV3072" epithelial mitogen homolog (mouse) 2006-10-17 2012-12-07 2014-11-19 255324 ENSG00000182585 OTTHUMG00000160869 uc003hic.3 NM_001013442 "CCDS59475|CCDS59476|CCDS59477|CCDS59478|CCDS59479" Q6UW88 MGI:1919170 RGD:1560084 EPGN +HGNC:3385 EPHA1 EPH receptor A1 protein-coding gene gene with protein product Approved 7q34-q35 07q34-q35 EPH "EPHT|EPHT1" EphA1 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1989-05-16 2004-10-28 2016-10-11 2041 ENSG00000146904 OTTHUMG00000155894 uc003wcz.3 M18391 XR_428169 CCDS5884 P21709 9267020 MGI:107381 RGD:1304680 EPHA1 179610 objectId:1821 2.7.10.1 +HGNC:27799 EPHA1-AS1 EPHA1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q35 07q35 EPHA1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 285965 ENSG00000229153 OTTHUMG00000155893 uc003wda.6 AL833583 NR_033897 +HGNC:3386 EPHA2 EPH receptor A2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 ECK EphA2 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1991-08-07 2004-10-28 2016-10-05 1969 ENSG00000142627 OTTHUMG00000009527 uc001aya.2 BC037166 NM_004431 CCDS169 P29317 9119409 MGI:95278 RGD:1307204 EPHA2 176946 209474 objectId:1822 2.7.10.1 +HGNC:3387 EPHA3 EPH receptor A3 protein-coding gene gene with protein product Approved 3p11.1 03p11.1 "HEK|HEK4" "ETK|ETK1|TYRO4" EphA3 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1993-06-23 2004-10-28 2016-10-05 2042 ENSG00000044524 OTTHUMG00000159040 uc003dqy.3 M83941 NM_005233 "CCDS2922|CCDS46875" P29320 "1737782|1311845" MGI:99612 RGD:68389 EPHA3 179611 objectId:1823 2.7.10.1 +HGNC:3388 EPHA4 EPH receptor A4 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 Hek8 TYRO1 EphA4 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1992-10-02 2004-10-28 2016-10-05 2043 ENSG00000116106 OTTHUMG00000133142 uc002vmq.4 L36645 XM_005246374 CCDS2447 P54764 9267020 MGI:98277 RGD:1560587 EPHA4 602188 457688 objectId:1824 2.7.10.1 +HGNC:3389 EPHA5 EPH receptor A5 protein-coding gene gene with protein product Approved 4q13.1-q13.2 04q13.1-q13.2 "Hek7|TYRO4|CEK7|EHK1" EphA5 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1997-10-10 2004-10-28 2016-10-11 2044 ENSG00000145242 OTTHUMG00000129273 uc011cah.3 L36644 NM_004439 "CCDS3513|CCDS3514|CCDS75131|CCDS75132|CCDS75133" P54756 "9267020|7528718" MGI:99654 RGD:620831 EPHA5 600004 objectId:1825 +HGNC:50602 EPHA5-AS1 EPHA5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q13.2 04q13.2 2014-05-22 2016-10-05 100144602 ENSG00000250846 OTTHUMG00000161982 NR_034138 +HGNC:19296 EPHA6 EPH receptor A6 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 FLJ35246 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 2004-06-25 2004-10-28 2016-10-05 285220 ENSG00000080224 OTTHUMG00000159208 uc010how.2 AK092565 NM_001080448 "CCDS46876|CCDS54616|CCDS63697" Q9UF33 12471243 MGI:108034 RGD:1304614 EPHA6 600066 objectId:1826 +HGNC:3390 EPHA7 EPH receptor A7 protein-coding gene gene with protein product Approved 6q16.1 06q16.1 Hek11 EphA7 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1997-10-10 2004-10-28 2016-10-05 2045 ENSG00000135333 OTTHUMG00000015228 uc003poe.5 L36642 XM_005248669 "CCDS5031|CCDS75494" Q15375 9267020 MGI:95276 RGD:70957 EPHA7 602190 objectId:1827 +HGNC:3391 EPHA8 EPH receptor A8 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 Hek3 EEK EphA8 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1990-09-30 2004-10-28 2015-08-27 2046 ENSG00000070886 OTTHUMG00000002892 uc001bfx.2 BC038796 NM_020526 "CCDS225|CCDS30626" P29322 1648701 MGI:109378 RGD:708543 EPHA8 176945 objectId:1828 2.7.10.1 +HGNC:19987 EPHA10 EPH receptor A10 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "FLJ16103|FLJ33655" "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 2005-01-21 2015-09-11 284656 ENSG00000183317 OTTHUMG00000004325 uc009vvi.4 AK090974 NM_173641 "CCDS425|CCDS41305" Q5JZY3 12477932 MGI:3586824 RGD:1562679 EPHA10 611123 objectId:1829 +HGNC:3392 EPHB1 EPH receptor B1 protein-coding gene gene with protein product Approved 3q22.2 03q22.2 Hek6 EPHT2 EphB1 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1995-03-23 2004-10-28 2016-01-15 2047 ENSG00000154928 OTTHUMG00000159804 uc003eqt.4 L40636 NM_004441 CCDS46921 P54762 8666391 MGI:1096337 RGD:2556 EPHB1 600600 objectId:1830 +HGNC:3393 EPHB2 EPH receptor B2 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "Hek5|Tyro5" "DRT|ERK|EPHT3" EphB2 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1995-05-09 2004-10-28 2016-10-12 2048 ENSG00000133216 OTTHUMG00000002881 uc001bge.4 AF025304 NM_017449 "CCDS229|CCDS230|CCDS81279" P29323 1648701 MGI:99611 RGD:1564232 LRG_780|http://www.lrg-sequence.org/LRG/LRG_780 EPHB2 600997 121567 objectId:1831 2.7.10.1 +HGNC:3394 EPHB3 EPH receptor B3 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "Hek2|Tyro6" ETK2 EphB3 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1993-12-07 2004-10-28 2015-09-11 2049 ENSG00000182580 OTTHUMG00000156710 uc003foz.4 X75208 NM_004443 CCDS3268 P54753 8397371 MGI:104770 RGD:1305602 EPHB3 601839 objectId:1832 +HGNC:3395 EPHB4 EPH receptor B4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 Tyro11 HTK EphB4 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1994-12-15 2004-10-28 2016-10-05 2050 ENSG00000196411 OTTHUMG00000157040 uc003uwn.2 AY056047 NM_004444 CCDS5706 P54760 8188704 MGI:104757 RGD:1583193 EPHB4 600011 objectId:1833 +HGNC:3396 EPHB6 EPH receptor B6 protein-coding gene gene with protein product Approved 7q34 07q34 HEP EphB6 "Fibronectin type III domain containing|Sterile alpha motif domain containing|EPH receptors" "555|760|1095" 1997-10-10 2004-10-28 2016-10-05 2051 ENSG00000106123 OTTHUMG00000155707 uc033ans.2 D83492 XM_011515881 "CCDS5873|CCDS75672" O15197 MGI:1096338 RGD:1306163 EPHB6 602757 objectId:1834 +HGNC:3400 EPHTLG entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3401 EPHX1 epoxide hydrolase 1 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 EPHX epoxide hydrolase 1, microsomal (xenobiotic) 1988-08-09 2016-01-20 2016-10-05 2052 ENSG00000143819 OTTHUMG00000037743 uc001hpk.4 J03518 NM_000120 CCDS1547 P07099 9925921 MGI:95405 RGD:2557 EPHX1 132810 121574 S33.971 3.3.2.9 +HGNC:3402 EPHX2 epoxide hydrolase 2 protein-coding gene gene with protein product Approved 8p21.2-p21.1 08p21.2-p21.1 epoxide hydrolase 2, cytoplasmic HAD Asp-based non-protein phosphatases 1045 1994-07-26 2016-01-20 2016-10-11 2053 ENSG00000120915 OTTHUMG00000102115 uc003xfu.5 L05779 NM_001979 "CCDS6060|CCDS59097|CCDS59098" P34913 MGI:99500 RGD:620732 EPHX2 132811 S33.973 "3.3.2.10|3.1.3.76" +HGNC:23760 EPHX3 epoxide hydrolase 3 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 FLJ22408 ABHD9 abhydrolase domain containing 9 Abhydrolase domain containing 4 2003-12-08 2009-04-06 2009-04-06 2016-10-05 79852 ENSG00000105131 OTTHUMG00000183251 uc060ush.1 AK026061 NM_024794 CCDS12327 Q9H6B9 MGI:1919182 RGD:1307206 EPHX3 S33.978 +HGNC:23758 EPHX4 epoxide hydrolase 4 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "EPHXRP|FLJ90341" ABHD7 abhydrolase domain containing 7 Abhydrolase domain containing 4 2003-12-08 2009-04-06 2009-04-06 2015-09-11 253152 ENSG00000172031 OTTHUMG00000010114 uc001don.3 AK074822 NM_173567 CCDS736 Q8IUS5 12477932 MGI:2686228 RGD:1308891 EPHX4 S33.978 +HGNC:3413 EPM2A epilepsy, progressive myoclonus type 2A, Lafora disease (laforin) protein-coding gene gene with protein product Approved 6q24.3 06q24.3 "LDE|LD" epilepsy, progressive myoclonus type 2, Lafora disease (laforin) Atypical dual specificity phosphatases 896 1998-10-01 2016-10-05 7957 ENSG00000112425 OTTHUMG00000015747 uc003qkw.4 AF284580 XM_011536113 CCDS5206 "B3EWF7|O95278" "9222970|7485240" MGI:1341085 RGD:71047 EPM2A 607566 121577 +HGNC:19735 EPM2AIP1 EPM2A interacting protein 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "KIAA0766|FLJ11207" laforin interacting protein 1 EPM2A (laforin) interacting protein 1 2003-03-26 2016-06-02 2016-10-05 9852 ENSG00000178567 OTTHUMG00000185486 uc003cgk.4 AB018309 NM_014805 CCDS46790 Q7L775 MGI:1925031 RGD:1310977 EPM2AIP1 607911 +HGNC:21604 EPN1 epsin 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 2003-06-27 2015-08-25 29924 ENSG00000063245 OTTHUMG00000180911 uc002qlw.4 AF073727 NM_013333 "CCDS46198|CCDS46199|CCDS46200" Q9Y6I3 "9723620|10557078" MGI:1333763 RGD:619772 EPN1 607262 +HGNC:18639 EPN2 epsin 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "KIAA1065|EHB21" Eps15 binding protein 2002-05-14 2015-07-31 22905 ENSG00000072134 OTTHUMG00000187034 uc002gvd.5 AB028988 NM_014964 "CCDS11203|CCDS11204|CCDS42277" O95208 10567358 MGI:1333766 RGD:619773 EPN2 607263 +HGNC:40849 EPN2-AS1 EPN2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 EPN2 antisense RNA 1 (non-protein coding) 2011-09-21 2012-08-15 2014-11-18 100874018 ENSG00000235397 OTTHUMG00000130623 uc031qzg.1 NR_048576 +HGNC:41445 EPN2-IT1 EPN2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 EPN2 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874309 NR_046824 +HGNC:18235 EPN3 epsin 3 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "FLJ20778|MGC129899" 2002-05-14 2008-07-18 55040 ENSG00000049283 OTTHUMG00000162155 uc002ira.5 AF324241 NM_017957 CCDS11570 Q9H201 "10951261|11359770" MGI:1919139 RGD:1306416 EPN3 607264 +HGNC:3415 EPO erythropoietin protein-coding gene gene with protein product Approved 7q22.1 07q22.1 EP Endogenous ligands 542 2001-06-22 2016-10-05 2056 ENSG00000130427 OTTHUMG00000152121 uc003uwi.5 X02157 NM_000799 CCDS5705 P01588 "9799793|3838366" MGI:95407 RGD:2559 EPO 133170 +HGNC:3416 EPOR erythropoietin receptor protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Fibronectin type III domain containing 555 1990-05-14 2016-01-15 2057 ENSG00000187266 OTTHUMG00000182027 uc002mrj.3 M34986 NM_000121 CCDS12260 P19235 MGI:95408 RGD:2560 EPOR 133171 121581 objectId:1718 +HGNC:15932 EPPIN epididymal peptidase inhibitor protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "EPPIN1|EPPIN2|EPPIN3|dJ461P17.2|WAP7|WFDC7|CT71" "epididymal protease inhibitor|cancer/testis antigen 72" SPINLW1 "serine protease inhibitor-like, with Kunitz and WAP domains 1 (eppin)|serine peptidase inhibitor-like, with Kunitz and WAP domains 1 (eppin)" WAP four-disulfide core domain containing 361 2001-07-31 2012-08-22 2012-08-22 2014-11-19 57119 ENSG00000101448 OTTHUMG00000032588 uc002xou.4 AF286370 NM_020398 CCDS13359 O95925 "11404006|12206714" MGI:1922776 EPPIN 609031 +HGNC:38825 EPPIN-WFDC6 EPPIN-WFDC6 readthrough other readthrough Approved 20q13.12 20q13.12 SPINLW1-WFDC6 SPINLW1-WFDC6 readthrough 2011-02-21 2012-09-03 2012-09-03 2014-11-19 100526773 ENSG00000249139 OTTHUMG00000161548 uc010zxc.3 NM_001198986.1 CCDS56195 "O95925|Q9BQY6" MGI:1922776 RGD:1597722 +HGNC:15577 EPPK1 epiplakin 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 EPIPL1 epidermal autoantigen 450K Plakins 939 2001-04-26 2016-10-12 83481 ENSG00000261150 OTTHUMG00000165206 uc003zaa.3 AB051895 NM_031308 CCDS75800 P58107 "11278896|15671067" MGI:2386306 RGD:1587023 LRG_880|http://www.lrg-sequence.org/LRG/LRG_880 EPPK1 607553 +HGNC:3417 EPR1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-06-07 +HGNC:3418 EPRS glutamyl-prolyl-tRNA synthetase protein-coding gene gene with protein product Approved 1q41 01q41 "EARS|PARS|GLUPRORS" "glutamate tRNA ligase|proline tRNA ligase" "QPRS|QARS" "Aminoacyl tRNA synthetases, Class I|Aminoacyl tRNA synthetases, Class II" "131|132" 1991-02-20 2014-11-18 2058 ENSG00000136628 OTTHUMG00000037433 uc001hly.2 X54326 NM_004446 CCDS31027 P07814 1988429 MGI:97838 RGD:1310952 EPRS 138295 "6.1.1.15|6.1.1.17" +HGNC:3420 EPS8 epidermal growth factor receptor pathway substrate 8 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 1994-12-19 2008-05-02 2059 ENSG00000151491 OTTHUMG00000168787 uc001rdb.4 U12535 XM_011520605 CCDS31753 Q12929 8084614 MGI:104684 RGD:1310590 EPS8 600206 402371 +HGNC:21295 EPS8L1 EPS8 like 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "FLJ20258|DRC3|MGC23164|MGC4642" 2003-06-05 2015-11-17 2015-11-17 54869 ENSG00000131037 OTTHUMG00000180513 uc002qis.5 AK057052 NM_017729 "CCDS12914|CCDS12915" Q8TE68 12620401 MGI:1914675 RGD:1311146 EPS8L1 614987 +HGNC:21296 EPS8L2 EPS8 like 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "FLJ21935|FLJ22171|MGC3088" EPS8-like 2 2003-06-05 2016-01-20 2016-01-20 64787 ENSG00000177106 OTTHUMG00000165165 uc001lqt.4 AF318331 NM_022772 CCDS31328 Q9H6S3 12620401 MGI:2138828 RGD:1310912 EPS8L2 614988 +HGNC:21297 EPS8L3 EPS8 like 3 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "FLJ21522|MGC16817" EPS8-like 3 2003-06-05 2016-01-20 2016-10-05 79574 ENSG00000198758 OTTHUMG00000011651 uc001dyq.3 AK025175 NM_024526 "CCDS813|CCDS814|CCDS815" Q8TE67 12620401 MGI:2139743 RGD:1308310 EPS8L3 614989 320535 +HGNC:3419 EPS15 epidermal growth factor receptor pathway substrate 15 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "AF-1P|MLLT5" EF-hand domain containing 863 1994-12-19 2016-10-05 2060 ENSG00000085832 OTTHUMG00000008192 uc001csq.2 BC054006 NM_001981 CCDS557 P42566 8183552 MGI:104583 RGD:1305550 EPS15 600051 +HGNC:24634 EPS15L1 epidermal growth factor receptor pathway substrate 15 like 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 eps15R epidermal growth factor receptor pathway substrate 15-like 1 EF-hand domain containing 863 2004-02-10 2016-05-12 2016-10-05 58513 ENSG00000127527 OTTHUMG00000182361 uc002ndz.3 AF110265 NM_021235 "CCDS32944|CCDS58653|CCDS58654|CCDS59363" Q9UBC2 21700002 MGI:104582 RGD:1565708 EPS15L1 616826 +HGNC:18166 EPS15P1 epidermal growth factor receptor pathway substrate 15 pseudogene 1 pseudogene pseudogene Approved 7p12.3 07p12.3 PRO1866 EPS15L2 epidermal growth factor receptor pathway substrate 15-like 2 2004-02-10 2010-12-08 2010-12-08 2014-11-19 55380 ENSG00000242948 OTTHUMG00000155470 AF119858 NG_008280 +HGNC:16465 EPSTI1 epithelial stromal interaction 1 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "BRESI1|MGC29634" epithelial stromal interaction protein 1 epithelial stromal interaction 1 (breast) 2001-09-05 2016-09-27 2016-10-05 94240 ENSG00000133106 OTTHUMG00000016814 uc001uyx.3 AF396928 NM_001002264 "CCDS9387|CCDS31964|CCDS81765" Q96J88 11991720 MGI:1915168 RGD:1563207 EPSTI1 607441 +HGNC:3423 EPX eosinophil peroxidase protein-coding gene gene with protein product Approved 17q22 17q22 "EPO|EPP|EPX-PEN" 1998-11-24 2016-10-05 8288 ENSG00000121053 OTTHUMG00000178802 uc002ivq.4 M26515 NM_000502 CCDS11602 P11678 "2550461|2541222" MGI:107569 RGD:1311882 EPX 131399 1.11.1.7 +HGNC:3053 EPYC epiphycan protein-coding gene gene with protein product Approved 12q21.33 12q21.33 "Pg-Lb|SLRR3B" epiphycan proteoglycan DSPG3 "dermatan sulphate proteoglycan 3|dermatan sulfate proteoglycan 3" Small leucine rich repeat proteoglycans 573 1996-05-30 2006-11-21 2006-11-21 2016-10-05 1833 ENSG00000083782 OTTHUMG00000170072 uc001tbk.3 AF031658 NM_004950 CCDS31870 Q99645 8975717 MGI:107942 RGD:1305904 EPYC 601657 +HGNC:1359 EQTN equatorin protein-coding gene gene with protein product Approved 9p21.2 09p21.2 "AFAF|SPACA8|equatorin" "Acr formation associated factor|Acrosome formation associated factor|sperm acrosome associated 8" C9orf11 "chromosome 9 open reading frame 11|equatorin|equatorin, sperm acrosome associated" 2000-06-16 2012-09-20 2015-11-27 2016-10-05 54586 ENSG00000120160 OTTHUMG00000021033 uc003zql.4 AJ278482 NM_020641 "CCDS35001|CCDS55300" Q9NQ60 MGI:1915003 RGD:1563332 +HGNC:3424 ERAL1 Era like 12S mitochondrial rRNA chaperone 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 HERA-B "Era (E. coli G-protein homolog)-like 1|Era G-protein-like 1 (E. coli)|Era-like 12S mitochondrial rRNA chaperone 1" 1999-11-19 2016-03-31 2016-03-31 26284 ENSG00000132591 OTTHUMG00000132675 uc002hcy.2 AF082657 NM_005702 CCDS11244 O75616 "10945472|20604745" MGI:1889295 RGD:1304714 ERAL1 607435 +HGNC:18173 ERAP1 endoplasmic reticulum aminopeptidase 1 protein-coding gene gene with protein product Approved 5q15 05q15 "ARTS-1|A-LAP|PILS-AP|KIAA0525|ERAAP1" "aminopeptidase regulator of TNFR1 shedding|adipocyte-derived leucine aminopeptidase|puromycin-insensitive leucyl-specific aminopeptidase" "Aminopeptidases|Minor histocompatibility antigens" "104|870" 2007-11-21 2015-09-11 51752 ENSG00000164307 OTTHUMG00000128721 uc003kml.4 AB011097 NM_016442 "CCDS4085|CCDS47250" Q9NZ08 "10220586|12189246|16286653" MGI:1933403 RGD:708542 ERAP1 606832 449094 M01.018 objectId:1566 +HGNC:29499 ERAP2 endoplasmic reticulum aminopeptidase 2 protein-coding gene gene with protein product Approved 5q15 05q15 "L-RAP|LRAP" leukocyte-derived arginine aminopeptidase Aminopeptidases 104 2007-11-21 2014-11-19 64167 ENSG00000164308 OTTHUMG00000128718 uc003kmq.4 AF191545 NM_022350 CCDS4086 Q6P179 "12799365|15908954" ERAP2 609497 M01.024 objectId:1567 +HGNC:5174 ERAS ES cell expressed Ras protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "HRAS2|HRASP" v-Ha-ras Harvey rat sarcoma viral oncogene homolog pseudogene RAS type GTPase family 389 2001-06-22 2003-07-16 2003-07-14 2015-08-25 3266 ENSG00000187682 OTTHUMG00000059533 uc064zbl.1 X00419 NM_181532 CCDS35246 Q7Z444 12774123 MGI:2665023 RGD:1585907 ERAS 300437 +HGNC:3430 ERBB2 erb-b2 receptor tyrosine kinase 2 protein-coding gene gene with protein product Approved 17q12 17q12 "NEU|HER-2|CD340|HER2" "neuro/glioblastoma derived oncogene homolog|human epidermal growth factor receptor 2" NGL "v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2 (neuro/glioblastoma derived oncogene homolog)|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 2" "CD molecules|Minor histocompatibility antigens|Erb-b2 receptor tyrosine kinases" "471|870|1096" 2001-06-22 2014-12-19 2016-10-12 2064 ENSG00000141736 OTTHUMG00000179300 uc002hso.4 X03363 NM_004448 "CCDS32642|CCDS45667|CCDS74052|CCDS77016|CCDS77017" P04626 MGI:95410 RGD:2561 LRG_724|http://www.lrg-sequence.org/LRG/LRG_724 ERBB2 164870 objectId:2019 CD340 +HGNC:3431 ERBB3 erb-b2 receptor tyrosine kinase 3 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 HER3 human epidermal growth factor receptor 3 LCCS2 "lethal congenital contracture syndrome 2|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3" Erb-b2 receptor tyrosine kinases 1096 1990-07-15 2014-12-19 2016-10-12 2065 ENSG00000065361 OTTHUMG00000170140 uc001sjh.4 M34309 NM_001982 "CCDS31833|CCDS44918" P21860 MGI:95411 RGD:69323 LRG_996|http://www.lrg-sequence.org/LRG/LRG_996 ERBB3 190151 160236 objectId:1798 +HGNC:3432 ERBB4 erb-b2 receptor tyrosine kinase 4 protein-coding gene gene with protein product Approved 2q34 02q34 "ALS19|HER4" human epidermal growth factor receptor 4 "v-erb-a avian erythroblastic leukemia viral oncogene homolog-like 4|v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4" Erb-b2 receptor tyrosine kinases 1096 1995-09-07 2014-12-19 2016-10-05 2066 ENSG00000178568 OTTHUMG00000133012 uc002veg.2 L07868 NM_001042599 "CCDS2394|CCDS42811" Q15303 "7700649|17018285" MGI:104771 RGD:620486 ERBB4 600543 370064 objectId:1799 +HGNC:15842 ERBIN erbb2 interacting protein protein-coding gene gene with protein product Approved 5q12.3 05q12.3 LAP2 "densin-180-like protein|ERBB2-interacting protein" ERBB2IP erbb2-interacting protein PDZ domain containing 1220 2001-06-18 2016-02-17 2001-11-29 2016-10-05 55914 ENSG00000112851 OTTHUMG00000097808 uc003jui.3 NM_018695 "CCDS3990|CCDS34172|CCDS58951|CCDS58952|CCDS58953|CCDS58954" Q96RT1 "10574462|10878805" MGI:1890169 RGD:1562952 606944 +HGNC:17072 ERC1 ELKS/RAB6-interacting/CAST family member 1 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "ELKS|KIAA1081|CAST2|MGC12974" RAB6IP2 RAB6 interacting protein 2 2004-11-26 2006-08-14 2006-08-14 2016-10-05 23085 ENSG00000082805 OTTHUMG00000130138 uc001qjb.3 AB015617 NM_015064 "CCDS8508|CCDS53732|CCDS76504" Q8IUD2 "10697956|11929610" MGI:2151013 RGD:628733 ERC1 607127 121583 +HGNC:31922 ERC2 ELKS/RAB6-interacting/CAST family member 2 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "CAST|CAST1|KIAA0378|SPBC110|Spc110|ELKSL" 2006-08-14 2015-09-11 26059 ENSG00000187672 OTTHUMG00000158390 uc062kue.1 AB002376 NM_015576 CCDS46851 O15083 MGI:1098749 RGD:708372 ERC2 +HGNC:1229 ERC2-IT1 ERC2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3p14.3 03p14.3 Po42 "C1orf1|C3orf51" "chromosome 1 open reading frame 1|chromosome 3 open reading frame 51|ERC2 intronic transcript 1 (non-protein coding)" 1998-08-06 2012-05-30 2015-02-25 2015-02-25 711 ENSG00000281708 OTTHUMG00000189578 uc003dhs.5 U88965 NR_024615 O76042 9653645 +HGNC:3433 ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit protein-coding gene gene with protein product Approved 19q13.32 19q13.32 RAD10 "excision repair cross-complementing rodent repair deficiency, complementation group 1 (includes overlapping antisense sequence)|excision repair cross-complementation group 1" ERCC excision repair associated 1268 2001-06-22 2016-05-23 2016-05-23 2067 ENSG00000012061 OTTHUMG00000182121 uc002pbs.3 NM_001983 "CCDS12662|CCDS12663|CCDS54279" P07992 "6462228|26939044" MGI:95412 RGD:1306992 ERCC1 126380 139163 +HGNC:3434 ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "MAG|EM9|MGC102762|MGC126218|MGC126219|TFIIH" "excision repair cross-complementing rodent repair deficiency, complementation group 2 protein|TFIIH basal transcription factor complex helicase XPB subunit" XPD "xeroderma pigmentosum complementary group D|excision repair cross-complementing rodent repair deficiency, complementation group 2|excision repair cross-complementation group 2" "General transcription factors|Xeroderma pigmentosum complementation groups|DNA helicases|ERCC excision repair associated" "565|1125|1167|1268" 2001-06-22 2016-05-23 2016-10-12 2068 ENSG00000104884 OTTHUMG00000048190 uc002pbj.3 NM_000400 "CCDS33049|CCDS46112" P18074 "8413672|2184031" MGI:95413 RGD:1309109 "The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=ERCC2|LRG_461|http://www.lrg-sequence.org/LRG/LRG_461" ERCC2 126340 121590 3.6.4.12 +HGNC:3435 ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "XPB|BTF2|RAD25|TFIIH|GTF2H" xeroderma pigmentosum group B complementing "excision repair cross-complementing rodent repair deficiency, complementation group 3|excision repair cross-complementation group 3" "General transcription factors|Xeroderma pigmentosum complementation groups|DNA helicases|ERCC excision repair associated" "565|1125|1167|1268" 2001-06-22 2016-05-23 2016-10-12 2071 ENSG00000163161 OTTHUMG00000131530 uc002toh.1 M31899 NM_000122 CCDS2144 P19447 8202161 MGI:95414 RGD:1307139 LRG_462|http://www.lrg-sequence.org/LRG/LRG_462 ERCC3 133510 132264 3.6.4.12 +HGNC:3436 ERCC4 ERCC excision repair 4, endonuclease catalytic subunit protein-coding gene gene with protein product Approved 16p13.12 16p13.12 "RAD1|FANCQ" xeroderma pigmentosum, complementation group F XPF "excision repair cross-complementing rodent repair deficiency, complementation group 4|excision repair cross-complementation group 4" "Fanconi anemia complementation groups|Xeroderma pigmentosum complementation groups|ERCC excision repair associated" "548|1125|1268" 2001-06-22 2016-05-23 2016-10-12 2072 ENSG00000175595 OTTHUMG00000048194 uc002dce.3 L76568 NM_005236 CCDS32390 Q92889 "9579555|8887684" MGI:1354163 RGD:1560340 LRG_463|http://www.lrg-sequence.org/LRG/LRG_463 ERCC4 133520 121595 +HGNC:3437 ERCC5 ERCC excision repair 5, endonuclease protein-coding gene gene with protein product Approved 13q33.1 13q33.1 Cockayne syndrome "ERCM2|XPGC" "xeroderma pigmentosum, complementation group G|excision repair cross-complementing rodent repair deficiency, complementation group 5|excision repair cross-complementation group 5" "Xeroderma pigmentosum complementation groups|ERCC excision repair associated" "1125|1268" 2001-06-22 2016-05-23 2016-10-12 2073 ENSG00000134899 OTTHUMG00000017310 uc001vpw.4 X71342 NM_000123 CCDS32004 P28715 8088806 MGI:103582 RGD:1586176 LRG_464|http://www.lrg-sequence.org/LRG/LRG_464 ERCC5 133530 132271 +HGNC:3438 ERCC6 ERCC excision repair 6, chromatin remodeling factor protein-coding gene gene with protein product Approved 10q11.23 10q11.23 "CSB|RAD26|ARMD5" Cockayne syndrome B protein CKN2 "excision repair cross-complementing rodent repair deficiency, complementation group 6|excision repair cross-complementation group 6" ERCC excision repair associated 1268 1989-06-30 2016-05-23 2016-10-12 2074 ENSG00000225830 OTTHUMG00000018195 uc001jhs.6 L04791 NM_000124 CCDS7229 Q03468 "1339317|19179336" MGI:1100494 RGD:1311509 LRG_465|http://www.lrg-sequence.org/LRG/LRG_465 ERCC6 609413 121599 3.6.4.- +HGNC:48347 ERCC6-PGBD3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-06-06 CCDS60529 +HGNC:20794 ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "FLJ20105|PICH|RAD26L" PLK1-interacting checkpoint helicase "excision repair cross-complementing rodent repair deficiency, complementation group 6-like|excision repair cross-complementation group 6 like" 2007-08-02 2016-05-23 2016-05-23 54821 ENSG00000186871 OTTHUMG00000021810 uc004eaq.2 AK000112 NM_017669 CCDS35329 Q2NKX8 "17218258|26643143" MGI:2654144 RGD:1565734 ERCC6L 300687 +HGNC:26922 ERCC6L2 ERCC excision repair 6 like 2 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 "FLJ37706|RAD26L" C9orf102 "chromosome 9 open reading frame 102|excision repair cross-complementing rodent repair deficiency, complementation group 6-like 2|excision repair cross-complementation group 6 like 2" 2004-03-11 2012-03-30 2016-05-23 2016-05-23 375748 ENSG00000182150 OTTHUMG00000020289 uc004avt.5 BC022957 NM_001010895 CCDS35072 Q5T890 MGI:1923501 RGD:1561537 ERCC6L2 615667 403281 +HGNC:3439 ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding gene gene with protein product Approved 5q12.1 05q12.1 CSA CKN1 "Cockayne syndrome 1 (classical)|excision repair cross-complementing rodent repair deficiency, complementation group 8|excision repair cross-complementation group 8" "WD repeat domain containing|ERCC excision repair associated" "362|1268" 1995-02-07 2016-05-23 2016-10-12 1161 ENSG00000049167 OTTHUMG00000097741 uc003jsm.4 U28413 NM_000082 CCDS3978 Q13216 8596535 MGI:1919241 RGD:1311570 LRG_466|http://www.lrg-sequence.org/LRG/LRG_466 ERCC8 609412 121604 +HGNC:3440 ERCM1 excision repair complementing defective repair in mouse cells phenotype phenotype only Approved 3 03 2001-06-22 2012-10-02 2076 133535 +HGNC:3442 ERDA1 expanded repeat domain, CAG/CTG 1 other region Approved 17q21.3 17q21.3 1999-01-21 2008-08-27 9030 AB007820 "9398837|9774773" 603279 +HGNC:3443 EREG epiregulin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 ER 1998-02-11 2016-10-05 2069 ENSG00000124882 OTTHUMG00000130005 uc003hie.2 D30783 NM_001432 CCDS3564 O14944 9337852 MGI:107508 RGD:620299 EREG 602061 +HGNC:3444 ERF ETS2 repressor factor protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "PE-2|PE2" Ets2 repressor factor ETS transcription factor family 534 1998-07-17 2016-02-24 2016-10-05 2077 ENSG00000105722 OTTHUMG00000182788 uc002ote.5 U58535 NM_006494 "CCDS12600|CCDS77308" P50548 "7588608|9192842" MGI:109637 RGD:1311991 ERF 611888 332108 +HGNC:26727 ERFE erythroferrone protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "FLJ37034|CTRP15|C1QTNF15" myonectin FAM132B family with sequence similarity 132, member B 2007-03-27 2016-05-27 2016-05-27 2016-06-20 151176 ENSG00000178752 OTTHUMG00000152901 uc061udn.1 AK094353 XM_001127207 CCDS77548 Q4G0M1 "22351773|26322167" MGI:3606476 RGD:1584688 615099 +HGNC:3446 ERG ERG, ETS transcription factor protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "erg-3|p55" "transcriptional regulator ERG (transforming protein ERG)|v-ets erythroblastosis virus E26 oncogene like|TMPRSS2-ERG prostate cancer specific" "v-ets avian erythroblastosis virus E26 oncogene related|v-ets avian erythroblastosis virus E26 oncogene homolog" ETS transcription factor family 534 2001-06-22 2016-05-23 2016-10-05 2078 ENSG00000157554 OTTHUMG00000090767 uc002yxa.4 NM_182918 "CCDS13657|CCDS13658|CCDS46648|CCDS46649|CCDS58789|CCDS82674" P11308 3274086 MGI:95415 RGD:621108 ERG 165080 121608 +HGNC:29205 ERGIC1 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "ERGIC32|ERGIC-32|KIAA1181|NET24" endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1 2006-01-19 2015-05-27 2015-05-27 57222 ENSG00000113719 OTTHUMG00000130520 uc003mbw.5 AF267855 NM_020462 CCDS34292 Q969X5 "10574461|15308636" MGI:1914708 RGD:1585015 ERGIC1 +HGNC:30208 ERGIC2 ERGIC and golgi 2 protein-coding gene gene with protein product Approved 12p11.22 12p11.22 "PTX1|Erv41" 2006-01-19 2014-11-19 51290 ENSG00000087502 OTTHUMG00000169322 uc001riv.4 AF216751 NM_016570 CCDS41765 Q96RQ1 "11445006|12932305" MGI:1914706 RGD:1310606 ERGIC2 612236 +HGNC:15927 ERGIC3 ERGIC and golgi 3 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "CGI-54|PRO0989|NY-BR-84|Erv46" "SDBCAG84|C20orf47" "serologically defined breast cancer antigen 84|chromosome 20 open reading frame 47" 2001-07-31 2006-01-19 2006-01-19 2015-08-25 51614 ENSG00000125991 OTTHUMG00000032346 uc002xcs.4 AF077030 NM_015966 "CCDS13257|CCDS13258" Q9Y282 10810093 MGI:1913616 RGD:1308144 ERGIC3 616971 +HGNC:3447 ERH enhancer of rudimentary homolog (Drosophila) protein-coding gene gene with protein product Approved 14q24.1 14q24.1 DROER enhancer of rudimentary (Drosophila) homolog 1995-10-06 2001-11-28 2015-09-11 2079 ENSG00000100632 OTTHUMG00000171323 uc001xlc.3 BC014301 NM_004450 CCDS9794 P84090 "8786099|9074495" MGI:108089 RGD:1595409 ERH 601191 +HGNC:41916 ERHP1 enhancer of rudimentary homolog (Drosophila) pseudogene 1 pseudogene pseudogene Approved 7q34 07q34 2011-05-18 2011-05-18 100507125 ENSG00000254270 OTTHUMG00000164901 NG_029010 PGOHUM00000233594 +HGNC:41917 ERHP2 enhancer of rudimentary homolog (Drosophila) pseudogene 2 pseudogene pseudogene Approved 6p12.1 06p12.1 2011-05-18 2011-05-18 100874403 ENSG00000218143 OTTHUMG00000014888 NG_032374 PGOHUM00000243206 +HGNC:23994 ERI1 exoribonuclease 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 3'HEXO "exoribonuclease 1|enhanced RNAi three prime mRNA exonuclease homolog 1 (C.elegans)" THEX1 three prime histone mRNA exonuclease 1 Exonucleases 544 2005-05-24 2008-12-16 2008-12-16 2014-11-19 90459 ENSG00000104626 OTTHUMG00000129328 uc064kcn.1 BC035279 NM_153332 CCDS5972 Q8IV48 14536070 MGI:1914526 RGD:1308378 ERI1 608739 +HGNC:30541 ERI2 ERI1 exoribonuclease family member 2 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "KIAA1504|MGC16943|ZGRF5" "enhanced RNAi three prime mRNA exonuclease homolog 2 (C.elegans)|exoribonuclease 2|zinc finger, GRF-type containing 5" EXOD1 exonuclease domain containing 1 "Zinc fingers GRF-type|Exonucleases" "135|544" 2006-04-04 2008-12-16 2009-10-07 2016-07-14 112479 ENSG00000196678 OTTHUMG00000131557 uc010vbb.3 BC010503 NM_080663 "CCDS10590|CCDS45436" A8K979 10819331 MGI:1918401 RGD:1583889 ERI2 3.1.-.- +HGNC:17276 ERI3 ERI1 exoribonuclease family member 3 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "FLJ22943|PINT1" "enhanced RNAi three prime mRNA exonuclease homolog 3 (C.elegans)|exoribonuclease 3" PRNPIP prion protein interacting protein Exonucleases 544 2001-12-13 2008-12-16 2009-10-07 2015-09-11 79033 ENSG00000117419 OTTHUMG00000007637 uc001clt.4 AF007157 NM_024066 CCDS30696 O43414 MGI:2153887 RGD:1595859 ERI3 609917 +HGNC:41431 ERI3-IT1 ERI3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p34.1 01p34.1 ERI3 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874278 ENSG00000233602 OTTHUMG00000037293 uc031tze.2 NR_046817 +HGNC:49404 ERICD E2F1-regulated inhibitor of cell death (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 "TCONS_00014875|ERIC" LINC01130 long intergenic non-protein coding RNA 1130 Long non-coding RNAs 788 2013-10-25 2013-11-18 2013-11-18 2014-10-22 104355217 ENSG00000280303 OTTHUMG00000164249 BX099671 24168400 +HGNC:27234 ERICH1 glutamate rich 1 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 glutamate-rich 1 2005-09-01 2015-11-05 2015-11-05 157697 ENSG00000104714 OTTHUMG00000129163 uc064jwr.1 NM_207332 CCDS5955 Q86X53 MGI:3588201 RGD:1559872 ERICH1 +HGNC:32290 ERICH1-AS1 ERICH1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8p23.3 08p23.3 C8orf68 "chromosome 8 open reading frame 68|ERICH1 antisense RNA 1 (non-protein coding)" 2005-09-22 2012-04-16 2012-08-15 2015-11-04 619343 ENSG00000237647 OTTHUMG00000163635 uc033azs.2 "BC022082|BC038783" NR_073397 P0C838 26393913 +HGNC:44395 ERICH2 glutamate rich 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 glutamate-rich 2 2012-09-25 2015-11-05 2015-11-05 285141 ENSG00000204334 OTTHUMG00000154074 uc002ugg.4 "BC127676|BC150546" XM_017003875 CCDS77486 A1L162 MGI:1913998 RGD:1563852 +HGNC:25346 ERICH3 glutamate rich 3 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "DKFZp547I048|RP11-653A5.1" C1orf173 "chromosome 1 open reading frame 173|glutamate-rich 3" 2005-07-21 2014-02-19 2015-11-05 2015-11-05 127254 ENSG00000178965 OTTHUMG00000009622 AL834414 NM_001002912 CCDS30755 Q5RHP9 12477932 MGI:1919095 RGD:1593279 +HGNC:41093 ERICH3-AS1 ERICH3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 2014-02-19 2014-11-19 101927320 ENSG00000234497 OTTHUMG00000037896 BX092187 NR_121671 +HGNC:34497 ERICH4 glutamate rich 4 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 LOC100170765 C19orf69 "chromosome 19 open reading frame 69|glutamate-rich 4" 2008-08-06 2014-02-19 2015-11-05 2015-11-05 100170765 ENSG00000204978 OTTHUMG00000187130 NM_001130514 CCDS46085 A6NGS2 MGI:3646269 RGD:1583255 +HGNC:26823 ERICH5 glutamate rich 5 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 FLJ39553 C8orf47 "chromosome 8 open reading frame 47|glutamate-rich 5" 2005-08-04 2014-02-19 2015-11-05 2015-11-05 203111 ENSG00000177459 OTTHUMG00000164819 AK096872 NM_173549 "CCDS34929|CCDS55266" Q6P6B1 12477932 MGI:2447772 RGD:1590540 +HGNC:28602 ERICH6 glutamate rich 6 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "MGC39662|ERICH6A" glutamate-rich 6A "C3orf44|FAM194A" "chromosome 3 open reading frame 44|family with sequence similarity 194, member A|glutamate-rich 6" 2006-01-13 2014-03-19 2015-11-05 2015-11-05 131831 ENSG00000163645 OTTHUMG00000133569 AK093375 NM_152394 "CCDS3151|CCDS77840" Q7L0X2 MGI:3588212 RGD:1559451 +HGNC:41205 ERICH6-AS1 ERICH6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 2014-03-19 2014-11-19 101928085 ENSG00000240137 OTTHUMG00000159845 "AI146376|AA262424" NR_121674 +HGNC:26523 ERICH6B glutamate rich 6B protein-coding gene gene with protein product Approved 13q14.13 13q14.13 FLJ32682 FAM194B "family with sequence similarity 194, member B|glutamate-rich 6B" 2009-09-08 2014-03-19 2015-11-05 2015-11-05 220081 ENSG00000165837 OTTHUMG00000016856 NM_182542 CCDS45045 Q5W0A0 MGI:1922522 RGD:6491099 +HGNC:25222 ERLEC1 endoplasmic reticulum lectin 1 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 "CL25084|XTP3TPB|XTP3-B|ERLECTIN" erlectin 1 C2orf30 chromosome 2 open reading frame 30 MRH domain containing 1233 2004-06-01 2009-08-26 2009-08-26 2016-10-05 27248 ENSG00000068912 OTTHUMG00000129281 uc002rxl.4 AF131849 NM_015701 "CCDS1848|CCDS46283|CCDS46284" Q96DZ1 "9110174|8619474|16531414|18264092" MGI:1914003 RGD:1306508 ERLEC1 611229 +HGNC:38012 ERLEC1P1 endoplasmic reticulum lectin 1 pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 2010-03-19 2014-11-18 100288870 ENSG00000240755 OTTHUMG00000155493 NG_022985 PGOHUM00000239144 +HGNC:16947 ERLIN1 ER lipid raft associated 1 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "KE04|Erlin-1|SPG62" Band_7 23-211 Keo4 (Interim) similar to C.elegans protein C42C1.9 "C10orf69|SPFH1" "chromosome 10 open reading frame 69|SPFH domain family, member 1" 2004-02-05 2007-01-26 2007-01-26 2014-11-19 10613 ENSG00000107566 OTTHUMG00000018900 uc001kqn.5 AF064093 NM_006459 CCDS7487 O75477 "11118313|16835267|24482476" MGI:2387613 RGD:1307058 611604 403322 +HGNC:1356 ERLIN2 ER lipid raft associated 2 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "NET32|SPG18" "C8orf2|SPFH2|Erlin-2" "chromosome 8 open reading frame 2|SPFH domain family, member 2" 1998-12-03 2007-01-26 2007-01-26 2016-10-12 11160 ENSG00000147475 OTTHUMG00000164005 uc003xke.5 AY358108 NM_007175 "CCDS6095|CCDS34879" O94905 "10449903|15897872|16835267" MGI:2387215 RGD:1309010 LRG_1040|http://www.lrg-sequence.org/LRG/LRG_1040 ERLIN2 611605 280390 +HGNC:15743 ERMAP erythroblast membrane associated protein (Scianna blood group) protein-coding gene gene with protein product Approved 1p34.2 01p34.2 BTN5 "RD|SC" "Radin blood group|Scianna blood group|erythroblast membrane-associated protein|erythroblast membrane-associated protein (RD and SC blood groups)|erythroblast membrane-associated protein (Scianna blood group)" "Blood group antigens|Butyrophilins|V-set domain containing" "454|458|590" 2001-09-06 2016-01-20 2016-10-12 114625 ENSG00000164010 OTTHUMG00000007619 uc001cic.2 AF311284 NM_018538 CCDS475 Q96PL5 11549310 MGI:1349816 RGD:1309996 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_806|http://www.lrg-sequence.org/LRG/LRG_806" ERMAP 609017 +HGNC:21056 ERMARD ER membrane associated RNA degradation protein-coding gene gene with protein product Approved 6q27 06q27 "FLJ11152|dJ266L20.3" C6orf70 chromosome 6 open reading frame 70 2003-11-26 2013-08-28 2016-06-01 2016-06-01 55780 ENSG00000130023 OTTHUMG00000016067 AK002014 NM_018341 "CCDS34576|CCDS64572|CCDS64573|CCDS64574" Q5T6L9 23768067 MGI:1917317 RGD:1309374 615532 370330 +HGNC:29208 ERMN ermin protein-coding gene gene with protein product Approved 2q24.1 02q24.1 "JN|ERMIN" juxtanodin KIAA1189 "KIAA1189|ermin, ERM-like protein" 2004-03-29 2008-01-15 2015-11-05 2016-10-05 57471 ENSG00000136541 OTTHUMG00000153843 uc002tzh.4 AB033015 NM_001009959 "CCDS42764|CCDS46431|CCDS77475" Q8TAM6 "16051705|16421295" MGI:1925017 RGD:1308367 ERMN 610072 +HGNC:23703 ERMP1 endoplasmic reticulum metallopeptidase 1 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "FLJ23309|FXNA" Felix-ina KIAA1815 KIAA1815 2003-12-02 2007-07-05 2007-07-05 2016-10-05 79956 ENSG00000099219 OTTHUMG00000019508 uc003zjm.2 AB058718 NM_024896 CCDS34983 Q7Z2K6 11347906 MGI:106250 RGD:727831 ERMP1 611156 M28.018 +HGNC:3449 ERN1 endoplasmic reticulum to nucleus signaling 1 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "IRE1|IRE1P" "inositol-requiring enzyme 1|Serine/threonine-protein kinase/endoribonuclease IRE1" ER to nucleus signalling 1 1998-08-06 2007-08-14 2016-10-05 2081 ENSG00000178607 OTTHUMG00000178879 uc002jdz.3 AF059198 NM_001433 CCDS45762 O75460 9637683 MGI:1930134 RGD:1559716 ERN1 604033 objectId:2020 "3.1.26.-|2.7.11.1" +HGNC:16942 ERN2 endoplasmic reticulum to nucleus signaling 2 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 IRE1b ER to nucleus signalling 2 2003-01-27 2007-08-14 2015-09-11 10595 ENSG00000134398 OTTHUMG00000177020 uc284nvp.1 AA527544 XM_011545711 "CCDS32407|CCDS76845" Q76MJ5 "9755171|11175748" MGI:1349436 RGD:1308743 ERN2 604034 objectId:2021 +HGNC:13280 ERO1A endoplasmic reticulum oxidoreductase 1 alpha protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "ERO1-alpha|Ero1alpha" ERO1L "ERO1 (S. cerevisiae)-like|ERO1-like (S. cerevisiae)" 2001-12-12 2015-06-19 2016-07-01 2016-07-01 30001 ENSG00000197930 OTTHUMG00000140301 AF081886 NM_014584 CCDS9709 Q96HE7 10671517 MGI:1354385 RGD:621713 615435 +HGNC:14355 ERO1B endoplasmic reticulum oxidoreductase 1 beta protein-coding gene gene with protein product Approved 1q42.3 01q42.3 "ERO1-L(beta)|Ero1beta" ERO1LB ERO1-like beta (S. cerevisiae) 2003-02-25 2015-06-19 2016-07-01 2016-10-05 56605 ENSG00000086619 OTTHUMG00000039955 AF252538 NM_019891 CCDS31064 Q86YB8 "10818100|21091435" MGI:1914725 RGD:1563548 615437 +HGNC:26495 ERP27 endoplasmic reticulum protein 27 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "FLJ32115|ERp27|PDIA8" protein disulfide isomerase family A, member 8 C12orf46 "chromosome 12 open reading frame 46|endoplasmic reticulum protein 27 kDa" Protein disulfide isomerases 692 2006-01-23 2007-03-26 2009-02-23 2014-11-19 121506 ENSG00000139055 OTTHUMG00000168741 uc001rco.4 AK056677 NM_152321 "CCDS8670|CCDS73450" Q96DN0 "12975309|16940051" MGI:1916437 RGD:1565381 ERP27 610642 +HGNC:13799 ERP29 endoplasmic reticulum protein 29 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "ERp28|ERp31|ERp29|PDI-DB|PDIA9" protein disulfide isomerase family A, member 9 C12orf8 chromosome 12 open reading frame 8 Protein disulfide isomerases 692 2001-04-27 2005-10-05 2005-10-05 2014-11-19 10961 ENSG00000089248 OTTHUMG00000169637 uc001ttk.2 X94910 XM_017018720 "CCDS9158|CCDS44977" P30040 "9738895|9037184" MGI:1914647 RGD:619781 ERP29 602287 +HGNC:24625 ERP29P1 endoplasmic reticulum lumenal protein 29 pseudogene 1 pseudogene pseudogene Approved 20q13.2 20q13.2 ERP28P 2010-09-29 2013-03-19 100420612 ENSG00000233347 OTTHUMG00000032754 NG_000933 PGOHUM00000247562 +HGNC:18311 ERP44 endoplasmic reticulum protein 44 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "KIAA0573|PDIA10" protein disulfide isomerase family A, member 10 TXNDC4 thioredoxin domain containing 4 (endoplasmic reticulum) Protein disulfide isomerases 692 2002-11-11 2009-02-23 2009-02-23 2016-10-05 23071 ENSG00000023318 OTTHUMG00000020363 uc004bam.4 AB011145 XM_088476 CCDS35082 Q9BS26 11847130 MGI:1923549 RGD:1309176 ERP44 609170 +HGNC:3450 ERPL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:3451 ERPL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-04 +HGNC:18185 ERRFI1 ERBB receptor feedback inhibitor 1 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 "MIG-6|GENE-33|RALT" 2005-08-23 2014-11-19 54206 ENSG00000116285 OTTHUMG00000001221 uc001aoz.4 BC025337 NM_018948 CCDS94 Q9UJM3 "10749885|2780291|12226756|11003669" MGI:1921405 RGD:1307599 ERRFI1 608069 +HGNC:41441 ERRFI1-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:3453 ERV1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-05-05 +HGNC:3454 ERV3-1 endogenous retrovirus group 3 member 1 other endogenous retrovirus Approved 7q11.21 07q11.21 "H-PLK|HERV-R|ERV-R|envR" ERV3 "endogenous retroviral sequence 3 (includes zinc finger protein H-plk/HPF9)|endogenous retroviral sequence 3|endogenous retrovirus group 3, member 1" 1986-01-01 2011-05-05 2015-12-16 2016-10-05 2086 ENSG00000213462 OTTHUMG00000165023 uc011kdr.3 AK295189 NM_001007253 CCDS47595 Q14264 "2115127|6495650|21542922" ERV3-1 131170 +HGNC:22218 ERV3-2 endogenous retrovirus group 3 member 2 other endogenous retrovirus Approved 7q33 07q33 KIAA1466 endogenous retrovirus group 3, member 2 2011-05-05 2015-12-16 2015-12-16 57612 "AB040899|AL833192" 21542922 +HGNC:39060 ERV9-1 endogenous retrovirus group 9 member 1 other endogenous retrovirus Approved 11q13.2 11q13.2 pTR2 endogenous retrovirus group 9, member 1 2011-05-05 2015-12-16 2015-12-16 100616497 "X15673|X15675|X57147" "2475853|16029331|21542922" +HGNC:41524 ERV18-1 endogenous retrovirus group 18 member 1 other endogenous retrovirus Approved 15q21.3 15q21.3 endogenous retrovirus group 18, member 1 2011-05-05 2015-12-16 2015-12-16 100133791 AK126787 21542922 +HGNC:14602 ERVE-1 endogenous retrovirus group E member 1 other endogenous retrovirus Approved 17q11.2 17q11.2 "HERV-E1|HERVE1|TCONS_00025599" ERVE1 "endogenous retroviral sequence E, 1|endogenous retrovirus group E, member 1" 2001-06-04 2011-05-05 2015-12-16 2015-12-16 85314 "AB062274|BC037342|FM212572" "11721880|11401426|21542922" 606601 +HGNC:39048 ERVE-2 endogenous retrovirus group E member 2 other endogenous retrovirus Approved 11q13.2 11q13.2 endogenous retrovirus group E, member 2 2011-05-05 2015-12-16 2015-12-16 100862691 FM212575 "18929381|21542922" +HGNC:39049 ERVE-3 endogenous retrovirus group E member 3 other endogenous retrovirus Approved 8p23.1 08p23.1 endogenous retrovirus group E, member 3 2011-05-05 2015-12-16 2015-12-16 100862700 FM212573 "18929381|21542922" +HGNC:39050 ERVE-4 endogenous retrovirus group E member 4 other endogenous retrovirus Approved 6q15 06q15 CT-RCC HERV-E endogenous retrovirus group E, member 4 2011-05-05 2015-12-16 2015-12-16 100616105 "EU137846|JQ733905" "18292810|21542922" +HGNC:38137 ERVFC1-1 endogenous retrovirus group FC1 member 1 other endogenous retrovirus Approved 7q36.2 07q36.2 "FLJ42291|envF(c)2|TCONS_l2_00027524" HERV-F(c)2_7q36.2 provirus ancestral Env polyprotein endogenous retrovirus group FC1, member 1 2011-05-05 2015-12-16 2015-12-16 346547 AK124285 P60608 "12970426|21542922" +HGNC:17254 ERVFC1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:39047 ERVFH21-1 endogenous retrovirus group FH21 member 1 other endogenous retrovirus Approved 7p21.3 07p21.3 HERV-F(XA34) endogenous retrovirus group FH21, member 1 2011-05-05 2015-12-16 2015-12-16 100616104 AK023847 "15533715|21542922" +HGNC:33823 ERVFRD-1 endogenous retrovirus group FRD member 1 other endogenous retrovirus Approved 6p24.2 06p24.2 "HERV-W/FRD|HERV-FRD|envFRD|ERVFRDE1|syncytin-2" endogenous retrovirus group FRD, member 1 2011-05-05 2015-12-16 2015-12-16 405754 ENSG00000244476 OTTHUMG00000159193 uc003mzt.4 "AK075092|AK123938|AY358244" NM_207582 CCDS4519 P60508 "12970426|14557543|15476554|21542922" MGI:3045308 RGD:1563240 ERVFRD-1 610524 +HGNC:35201 ERVFRD-2 endogenous retrovirus group FRD member 2 other endogenous retrovirus Approved 19q13.41 19q13.41 FLJ45949 endogenous retrovirus group FRD, member 2 2011-05-05 2015-12-16 2015-12-16 388560 AK127846 21542922 +HGNC:49792 ERVFRD-3 endogenous retrovirus group FRD member 3 other endogenous retrovirus Approved 9p21.3 09p21.3 endogenous retrovirus group FRD, member 3 2014-02-19 2015-12-16 2015-12-16 100533725 ENSG00000264801 OTTHUMG00000179358 AK091174 NG_028722 +HGNC:39053 ERVH-1 endogenous retrovirus group H member 1 other endogenous retrovirus Approved 4p15.2 04p15.2 HERV-H4p15.2 endogenous retrovirus group H, member 1 2011-05-05 2015-12-16 2015-12-16 100616446 ENSG00000251292 OTTHUMG00000160276 uc032tej.2 "EU669866|BC015108" "21542922|24681886" +HGNC:39054 ERVH-2 endogenous retrovirus group H member 2 other endogenous retrovirus Approved Xp22.32 Xp22.32 HERV-HX endogenous retrovirus group H, member 2 2011-05-05 2015-12-16 2015-12-16 100616461 "EU195218|EU195219" "19289097|21542922" +HGNC:39055 ERVH-3 endogenous retrovirus group H member 3 other endogenous retrovirus Approved 6q12 06q12 "HERV-H/F|TCONS_l2_00025412" endogenous retrovirus group H, member 3 2011-05-05 2015-12-16 2015-12-16 100289683 "AJ431196|BC021996" "12482668|21542922" +HGNC:21344 ERVH-4 endogenous retrovirus group H member 4 other endogenous retrovirus Approved 14q32.2 14q32.2 HERV-HD1 clone c4.2 endogenous retrovirus group H, member 4 2011-05-05 2015-12-16 2015-12-16 51359 "U88895|U35031" "9349478|21542922" +HGNC:39057 ERVH-5 endogenous retrovirus group H member 5 other endogenous retrovirus Approved 10p12.1 10p12.1 clone c14.6 endogenous retrovirus group H, member 5 2011-05-05 2015-12-16 2015-12-16 100862699 U35033 "9349478|21542922" +HGNC:39058 ERVH-6 endogenous retrovirus group H member 6 other endogenous retrovirus Approved Yq11.223 Yq11.223 endogenous retrovirus group H, member 6 2011-05-05 2015-12-16 2015-12-16 51581 U88898 "9349478|21542922" +HGNC:39059 ERVH-7 endogenous retrovirus group H member 7 other endogenous retrovirus Approved 14q32.12 14q32.12 TCONS_00022381 endogenous retrovirus group H, member 7 2011-05-05 2015-12-16 2015-12-16 100862698 "BC039675|T67812" "9349478|21542922" +HGNC:17216 ERVH48-1 endogenous retrovirus group 48 member 1 other endogenous retrovirus Approved 21q22.3 21q22.3 "C21orf105|NDUFV3-AS1" "chromosome 21 open reading frame 105|NDUFV3 antisense RNA 1 (non-protein coding)|endogenous retrovirus group 48, member 1" 2003-10-01 2011-05-05 2015-12-16 2015-12-16 90625 ENSG00000233056 OTTHUMG00000086835 uc002zco.4 "BC005107|CR591419" NM_001308491 M5A8F1 21542922 +HGNC:39052 ERVI-1 endogenous retrovirus group I member 1 other endogenous retrovirus Approved 9q22.1 09q22.1 endogenous retrovirus group I, member 1 2011-05-05 2015-12-16 2015-12-16 100131068 "AK124340|AK124077" 21542922 +HGNC:39000 ERVK-1 endogenous retrovirus group K member 1 other endogenous retrovirus Approved 1p31.1 01p31.1 c1_A endogenous retrovirus group K, member 1 2011-05-05 2015-12-16 2015-12-16 100862690 "FN806826|BQ304053" "18664271|15476554|21542922" +HGNC:39001 ERVK-2 endogenous retrovirus group K member 2 other endogenous retrovirus Approved 3p25.3 03p25.3 c3_A endogenous retrovirus group K, member 2 2011-05-05 2015-12-16 2015-12-16 100616100 "DQ112099|FN806829|EF153331" "18664271|21542922" +HGNC:39002 ERVK-3 endogenous retrovirus group K member 3 other endogenous retrovirus Approved 3q13.2 03q13.2 c3_B endogenous retrovirus group K, member 3 2011-05-05 2015-12-16 2015-12-16 100862689 FN806830 "18664271|21542922" +HGNC:13756 ERVK-4 endogenous retrovirus group K member 4 other endogenous retrovirus Approved 3q21.2 03q21.2 HERV-K(I) ERVK4 "endogenous retroviral sequence K (G1), 4|endogenous retrovirus group K, member 4" 2000-10-31 2011-05-05 2015-12-16 2015-12-16 60359 AB047209 "11401426|21542922" 614011 +HGNC:13757 ERVK-5 endogenous retrovirus group K member 5 other endogenous retrovirus Approved 3q12.3 03q12.3 HERV-K(II) ERVK5 "endogenous retroviral sequence K (G2), 5|endogenous retrovirus group K, member 5" 2000-10-31 2011-05-05 2015-12-16 2015-12-16 60358 AB047240 "P61583|Q9HDB8|Q9HDB9" "11401426|21542922" 614012 +HGNC:13915 ERVK-6 endogenous retrovirus group K member 6 other endogenous retrovirus Approved 7p22 07p22 "HERV-K(HML-2.HOM)|HERV-K108|HERV-K(C7)" "HERV-K (HML-2.HOM)|HERV-K108 envelope protein|HERV-K(C7) envelope protein|HERV-K_7p22.1 provirus ancestral Env polyprotein|HERV-K_7p22.1 provirus ancestral Pol protein|HERV-K_7p22.1 provirus Rec protein|HERV-K_7p22.1 provirus ancestral Pro protein" ERVK6 "endogenous retroviral sequence K, 6|endogenous retrovirus group K, member 6" 2000-11-29 2011-05-05 2015-12-16 2015-12-16 64006 AF074086 NM_001007236 "Q69383|Q69384|Q7LDI9|Q9BXR3|Q9Y6I0" "10080172|11401447|21542922" 605626 +HGNC:31828 ERVK-7 endogenous retrovirus group K member 7 other endogenous retrovirus Approved 1q22 01q22 "HERV-K(III)|HERV-K102" "HERV-K_1q22 provirus ancestral Gag polyprotein|HERV-K_1q22 provirus ancestral Env polyprotein|HERV-K_1q22 provirus Np9 protein|HERV-K_1q22 provirus ancestral Pol protein|HERV-K_1q22 provirus ancestral Pro protein" ERVK7 "endogenous retroviral sequence K, 7 (type 2)|endogenous retrovirus group K, member 7" 2004-10-07 2011-05-05 2015-12-16 2015-12-16 449619 BC092439 "P61567|P61582|P63130|P63131|P63135" "10469592|11401426|21542922" 614013 +HGNC:32302 ERVK-8 endogenous retrovirus group K member 8 other endogenous retrovirus Approved 8p23.1 08p23.1 "HERV-K115|envK6" "HERV-K_8p23.1 provirus ancestral Env polyprotein|HERV-K_8p23.1 provirus ancestral Gag polyprotein|HERV-K_8p23.1 provirus ancestral Pol protein|HERV-K_8p23.1 provirus Rec protein|HERV-K_8p23.1 provirus ancestral Pro protein" ERVK8 "endogenous retroviral sequence K, 8|Endogenous retrovirus group K, member 8|endogenous retrovirus group K, member 8" 2005-10-06 2011-05-05 2015-12-16 2015-12-16 619465 "P61575|P62685|P63122|P63133|Q902F8" "17077319|21542922" +HGNC:39005 ERVK-9 endogenous retrovirus group K member 9 other endogenous retrovirus Approved 6q14.1 06q14.1 "HERV-K_6q14.1 provirus ancestral Env polyprotein|HERV-K_6q14.1 provirus ancestral Gag polyprotein|HERV-K_6q14.1 provirus ancestral Gag-Pol polyprotein|HERV-K_6q14.1 provirus ancestral Pro protein" endogenous retrovirus group K, member 9 2011-05-05 2015-12-16 2015-12-16 100616102 "FN806836|AF080234|AY371030" "P61573|P63126|P63127|P63128|Q9UKH3" "9971820|18664271|21542922" +HGNC:39004 ERVK-10 endogenous retrovirus group K member 10 other endogenous retrovirus Approved 5q33.3 05q33.3 "HERV-K_5q33.3 provirus ancestral Gag polyprotein|HERV-K_5q33.3 provirus Np9 protein|HERV-K_5q33.3 provirus ancestral Pol protein|HERV-K_5q33.3 provirus ancestral Pro protein" endogenous retrovirus group K, member 10 2011-05-05 2015-12-16 2015-12-16 100616101 "FN806835|CF227253|CN345079|AF164613" "P10265|P10266|P61580|P87889" "18664271|15476554|21542922" +HGNC:39006 ERVK-11 endogenous retrovirus group K member 11 other endogenous retrovirus Approved 3q27.2 03q27.2 "c3_E|N8.4" HERV-K_3q27.3 provirus ancestral Pol protein endogenous retrovirus group K, member 11 2011-05-05 2015-12-16 2015-12-16 100862688 "FN806833|EF153348|AF080229|U87590" Q9UQG0 "18664271|9971820|21542922" +HGNC:39007 ERVK-12 endogenous retrovirus group K member 12 other endogenous retrovirus Approved 4q32.3 04q32.3 endogenous retrovirus group K, member 12 2011-05-05 2015-12-16 2015-12-16 100616442 "FN806834|EF153341|DQ112093" "18664271|21542922" +HGNC:39008 ERVK-13 endogenous retrovirus group K member 13 other endogenous retrovirus Approved 3q24 03q24 c3_D endogenous retrovirus group K, member 13 2011-05-05 2015-12-16 2015-12-16 100861467 FN806832 "18664271|21542922" +HGNC:39019 ERVK-14 endogenous retrovirus group K member 14 other endogenous retrovirus Approved 7q22.1 07q22.1 c7_B endogenous retrovirus group K, member 14 2011-05-05 2015-12-16 2015-12-16 100862687 FN806838 "18664271|21542922" +HGNC:39022 ERVK-15 endogenous retrovirus group K member 15 other endogenous retrovirus Approved 7q34 07q34 "c7_C|P1.10" endogenous retrovirus group K, member 15 2011-05-05 2015-12-16 2015-12-16 100616443 "FN806839|U87594" "18664271|21542922" +HGNC:39023 ERVK-16 endogenous retrovirus group K member 16 other endogenous retrovirus Approved 10p14 10p14 "c10_A.|M3.8" HERV-K_10p14 provirus Rec protein endogenous retrovirus group K, member 16 2011-05-05 2015-12-16 2015-12-16 100616411 "FN806841|EF543114|U87587|DQ112100" P61578 21542922 +HGNC:39024 ERVK-17 endogenous retrovirus group K member 17 other endogenous retrovirus Approved c10_B c10_B endogenous retrovirus group K, member 17 2011-05-05 2015-12-16 2015-12-16 100862686 FN806842 "18664271|21542922" +HGNC:39025 ERVK-18 endogenous retrovirus group K member 18 other endogenous retrovirus Approved 1q23.3 01q23.3 "c1_C|HERV-K18" "HERV-K_1q23.3 provirus ancestral Env polyprotein|endogenous retrovirus K-18|IDDMK1,2-22|HERV-K_1q23.3 provirus ancestral Pol protein|HERV-K_1q23.3 provirus ancestral Pro protein" endogenous retrovirus group K, member 18 2011-05-05 2015-12-16 2015-12-16 100775105 "FN806828|AF012336" "O42043|P63123|Q9QC07" "18664271|10516026|21542922" +HGNC:39026 ERVK-19 endogenous retrovirus group K member 19 other endogenous retrovirus Approved 19q11 19q11 "P1.8|HERV-K(C19)|envK3" "HERV-K_19q11 provirus ancestral Env polyprotein|HERV-K_19q11 provirus ancestral Pol protein|HERV-K_19q11 provirus ancestral Gag polyprotein|HERV-K_19q12 provirus ancestral Pro protein" endogenous retrovirus group K, member 19 2011-05-05 2015-12-16 2015-12-16 100862685 "U87593|AY395519" "O71037|P61572|P63120|Q9WJR5|Q9YNA8" "9460924|10516026|12970426|21542922" +HGNC:39031 ERVK-20 endogenous retrovirus group K member 20 other endogenous retrovirus Approved 11q23.3 11q23.3 c11_B endogenous retrovirus group K, member 20 2011-05-05 2015-12-16 2015-12-16 100616444 "FN806844|DQ112095" "18664271|21542922" +HGNC:39035 ERVK-21 endogenous retrovirus group K member 21 other endogenous retrovirus Approved 12q14.1 12q14.1 "c12_A|envK1" "HERV-K_12q14.1 provirus ancestral Env polyprotein|HERV-K_12q14.1 provirus ancestral Gag polyprotein|HERV-K_12q14.1 provirus ancestral Pro protein|HERV-K_12q14.1 provirus Rec protein" endogenous retrovirus group K, member 21 2011-05-05 2015-12-16 2015-12-16 100616103 "FN806845|U32496" "P61565|P61571|P62683|P63119" "18664271|12970426|21542922" +HGNC:39036 ERVK-22 endogenous retrovirus group K member 22 other endogenous retrovirus Approved 19p13.3 19p13.3 c19_A endogenous retrovirus group K, member 22 2011-05-05 2015-12-16 2015-12-16 100616445 "FN806846|EF153351" "18664271|21542922" +HGNC:39037 ERVK-23 endogenous retrovirus group K member 23 other endogenous retrovirus Approved 21q21.1 21q21.1 c21_A endogenous retrovirus group K, member 23 2011-05-05 2015-12-16 2015-12-16 100616197 "FN806847|EF543113" "18664271|21542922" +HGNC:39038 ERVK-24 endogenous retrovirus group K member 24 other endogenous retrovirus Approved 22q11.21 22q11.21 "c22_A|HERV-K101" "HERV-K_22q11.21 provirus ancestral Env polyprotein|HERV-K_22q11.21 provirus ancestral Gag polyprotein|HERV-K_22q11.21 provirus Np9 protein|HERV-K_22q11.21 provirus ancestral Pro protein" endogenous retrovirus group K, member 24 2011-05-05 2015-12-16 2015-12-16 100862684 "FN806848|AU124350" "P61566|P61581|P63129|P63145" "10469592|18664271|21542922" +HGNC:39039 ERVK-25 endogenous retrovirus group K member 25 other endogenous retrovirus Approved 11q22.1 11q22.1 c11_A "HERV-K_11q22.1 provirus ancestral Env polyprotein|HERV-K_11q22.1 provirus ancestral Pol protein|HERV-K_11q22.1 provirus Rec protein|HERV-K_11q22.1 provirus ancestral Pro protein" endogenous retrovirus group K, member 25 2011-05-05 2015-12-16 2015-12-16 100862683 "FN806843|CF227268|AW818206" "P61570|P61579|P63125|P63136" "18664271|21542922" +HGNC:44979 ERVK-26 endogenous retrovirus group K member 26 other endogenous retrovirus Approved 8p23.1 08p23.1 endogenous retrovirus group K, member 26 2014-01-03 2015-12-16 2015-12-16 103539957 JZ164910 23338945 +HGNC:44980 ERVK-27 endogenous retrovirus group K member 27 other endogenous retrovirus Approved 11q12.3 11q12.3 endogenous retrovirus group K, member 27 2014-01-03 2015-12-16 2015-12-16 106144566 JZ164909 23338945 +HGNC:44981 ERVK-28 endogenous retrovirus group K member 28 other endogenous retrovirus Approved 19q11 19q11 endogenous retrovirus group K, member 28 2014-01-03 2015-12-16 2015-12-16 106707175 ENSG00000267696 OTTHUMG00000180737 JZ164911 23338945 +HGNC:44982 ERVK-29 endogenous retrovirus group K member 29 other endogenous retrovirus Approved 19q13.12 19q13.12 endogenous retrovirus group K, member 29 2014-01-03 2015-12-16 2015-12-16 106144555 JZ164912 23338945 +HGNC:51378 ERVK-30 endogenous retrovirus group K member 30 other endogenous retrovirus Approved 2q32.1 02q32.1 endogenous retrovirus group K, member 30 2015-05-14 2015-12-16 2015-12-16 106144591 LN624403 25750667 +HGNC:51379 ERVK-31 endogenous retrovirus group K member 31 other endogenous retrovirus Approved 5q15 05q15 endogenous retrovirus group K, member 31 2015-05-14 2015-12-16 2015-12-16 106144590 LN624404 25750667 +HGNC:3455 ERVK2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-05-05 +HGNC:30466 ERVK3-1 endogenous retrovirus group K3 member 1 other endogenous retrovirus Approved 19q13.43 19q13.43 HERV-K(HML6-1) endogenous retrovirus group K3, member 1 2011-05-05 2015-12-16 2015-12-16 100507739 ENSG00000142396 OTTHUMG00000150367 uc061drc.2 "AK054868|BC010118|BC011670" "15533715|21542922" +HGNC:39040 ERVK3-2 endogenous retrovirus group K3 member 2 other endogenous retrovirus Approved 14q24.2 14q24.2 HML6-c14 endogenous retrovirus group K3, member 2 2011-05-05 2015-12-16 2015-12-16 100862697 "AK027828|AK096726|CR591084" "15533715|21542922" +HGNC:39108 ERVK3-3 endogenous retrovirus group K3 member 3 other endogenous retrovirus Approved 5q13.2 05q13.2 HML6-c5 endogenous retrovirus group K3, member 3 2011-05-05 2015-12-16 2015-12-16 100616462 FR714893 "18077721|21542922" +HGNC:39109 ERVK3-4 endogenous retrovirus group K3 member 4 other endogenous retrovirus Approved 11p15.4 11p15.4 HML6-c11 endogenous retrovirus group K3, member 4 2011-05-05 2015-12-16 2015-12-16 100616106 FR714894 "18077721|21542922" +HGNC:39110 ERVK3-5 endogenous retrovirus group K3 member 5 other endogenous retrovirus Approved 12q24.12 12q24.12 HML6-c12 endogenous retrovirus group K3, member 5 2011-05-05 2015-12-16 2015-12-16 100616412 FR714895 "18077721|21542922" +HGNC:39111 ERVK3-6 endogenous retrovirus group K3 member 6 other endogenous retrovirus Approved 19q13.41 19q13.41 HML6-c19A endogenous retrovirus group K3, member 6 2011-05-05 2015-12-16 2015-12-16 100616107 FR714896 "18077721|21542922" +HGNC:39112 ERVK3-7 endogenous retrovirus group K3 member 7 other endogenous retrovirus Approved 19p13.2 19p13.2 HML6-c19B endogenous retrovirus group K3, member 7 2011-05-05 2015-12-16 2015-12-16 100616199 FR714897 "18077721|21542922" +HGNC:39113 ERVK3-8 endogenous retrovirus group K3 member 8 other endogenous retrovirus Approved 20p11.21 20p11.21 endogenous retrovirus group K3, member 8 2011-05-05 2015-12-16 2015-12-16 100616108 FR714898 "18077721|21542922" +HGNC:3456 ERVK3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-05-05 +HGNC:43647 ERVK11-1 endogenous retrovirus group K11 member 1 other endogenous retrovirus Approved 1p13.3 01p13.3 HERV-K_1p13.3 provirus ancestral Env polyprotein endogenous retrovirus group K11, member 1 2011-12-15 2015-12-16 2015-12-16 100859922 "AK126628|AK128832" P61568 +HGNC:27548 ERVK13-1 endogenous retrovirus group K13 member 1 other endogenous retrovirus Approved 16p13.3 16p13.3 HERV-K_16p3.3 provirus ancestral Env polyprotein endogenous retrovirus group K13, member 1 2011-10-25 2015-12-16 2015-12-16 100507321 NR_040023 Q9NX77 +HGNC:42970 ERVMER34-1 endogenous retrovirus group MER34 member 1 other endogenous retrovirus Approved 4q12 04q12 endogenous retrovirus group MER34, member 1 2011-09-12 2015-12-16 2015-12-16 100288413 ENSG00000226887 OTTHUMG00000150366 uc003gzs.4 NM_024534 Q9H9K5 ERVMER34-1 +HGNC:27919 ERVMER61-1 endogenous retrovirus group MER61 member 1 other endogenous retrovirus Approved 1q31.1 01q31.1 C1orf99 "chromosome 1 open reading frame 99|endogenous retrovirus group MER61, member 1" 2005-05-31 2011-05-05 2015-12-16 2015-12-16 339476 ENSG00000230426 OTTHUMG00000035624 uc001gsd.4 BC040856 NM_001012274 21542922 +HGNC:39042 ERVPABLB-1 endogenous retrovirus group PABLB member 1 other endogenous retrovirus Approved 3p24.3 03p24.3 envR(b) HERV-R(b)_3p24.3 provirus ancestral Env polyprotein endogenous retrovirus group PABLB, member 1 2011-05-05 2015-12-16 2015-12-16 100862693 "BQ012865|CF529244|AI189490" P60509 "12970426|21542922" +HGNC:41525 ERVS71-1 endogenous retrovirus group S71 member 1 other endogenous retrovirus Approved 19p12 19p12 envT "HERV-T_19 provirus ancestral Env polyprotein|HERV-T Env protein" endogenous retrovirus group S71, member 1 2011-05-05 2015-12-16 2015-12-16 100862694 "CN288807|BQ932595|BQ941761" P61550 "16150157|12970426|21542922" +HGNC:41526 ERVS71-2 endogenous retrovirus group S71 member 2 other endogenous retrovirus Approved 10p11.1 10p11.1 HERV-HC2 endogenous retrovirus group S71, member 2 2011-05-05 2015-12-16 2015-12-16 100616200 "AB167270|AB167277" "17277898|21542922" +HGNC:3457 ERVT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3458 ERVT2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3459 ERVT3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3460 ERVT4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3461 ERVT5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:26501 ERVV-1 endogenous retrovirus group V member 1 other endogenous retrovirus Approved 19q13.41 19q13.41 "FLJ32214|HERV-V1|ENVV1" endogenous retrovirus group V, member 1 2011-05-05 2015-12-16 2015-12-16 147664 ENSG00000269526 OTTHUMG00000182942 uc002qap.4 "AK056776|BC104018|BC104019" NM_152473 CCDS59419 B6SEH8 "18826608|21542922" ERVV-1 +HGNC:39051 ERVV-2 endogenous retrovirus group V member 2 other endogenous retrovirus Approved 19q13.41 19q13.41 endogenous retrovirus group V, member 2 2011-05-05 2015-12-16 2015-12-16 100271846 ENSG00000268964 OTTHUMG00000182943 uc021uzd.2 "AI434519|CA417098|DA863698" NM_001191055 CCDS59420 B6SEH9 "18826608|21542922" ERVV-2 +HGNC:13525 ERVW-1 endogenous retrovirus group W member 1 other endogenous retrovirus Approved 7q21.2 07q21.2 "HERV-W|HERV-W-ENV|HERVW|HERV-7q" "envelope protein|HERV-W Env glycoprotein|enverin|syncytin-1|HERV-tryptophan envelope protein|HERV-W{7q21.1} provirus ancestral Env polyprotein|HERV-7q envelope protein|envelope glycoprotein|syncytin" ERVWE1 "endogenous retroviral family W, env(C7), member 1|endogenous retrovirus group W, member 1" 2000-09-20 2011-05-05 2015-12-16 2015-12-16 30816 ENSG00000242950 OTTHUMG00000131249 uc022ahe.2 AF208161 NM_014590 CCDS5626 Q9UQF0 "9835022|9882319|21542922" ERVW-1 604659 +HGNC:37653 ERVW-2 endogenous retrovirus group W member 2 other endogenous retrovirus Approved Xq22.3 Xq22.3 NTrenv ERVWE2 "endogenous retroviral family W, env, member 2|endogenous retrovirus group W, member 2" 2009-12-16 2011-05-05 2015-12-16 2015-12-16 100379323 "AF331500|FN689795" "19368703|21542922" +HGNC:39041 ERVW-3 endogenous retrovirus group W member 3 other endogenous retrovirus Approved 3q23 03q23 CL4 endogenous retrovirus group W, member 3 2011-05-05 2015-12-16 2015-12-16 100862696 AF127227 "10405350|21542922" +HGNC:39043 ERVW-4 endogenous retrovirus group W member 4 other endogenous retrovirus Approved 15q21.3 15q21.3 C187-23 endogenous retrovirus group W, member 4 2011-05-05 2015-12-16 2015-12-16 100616496 "AF123882|EF539878" "19368703|10405350|20005155|21542922" +HGNC:39044 ERVW-5 endogenous retrovirus group W member 5 other endogenous retrovirus Approved 3q26.32 03q26.32 CL2 endogenous retrovirus group W, member 5 2011-05-05 2015-12-16 2015-12-16 100862695 AF123881 "10405350|21542922" +HGNC:39045 ERVW-6 endogenous retrovirus group W member 6 other endogenous retrovirus Approved 11q14.1 11q14.1 endogenous retrovirus group W, member 6 2011-05-05 2015-12-16 2015-12-16 100616198 "AK022306|AB063619" "17559415|21542922" +HGNC:49246 ERVW-7 endogenous retrovirus group W member 7 other endogenous retrovirus Approved 1p33 01p33 endogenous retrovirus group W, member 7 2013-10-21 2015-12-16 2015-12-16 106144589 HG421043 +HGNC:49247 ERVW-8 endogenous retrovirus group W member 8 other endogenous retrovirus Approved 1p22.2 01p22.2 endogenous retrovirus group W, member 8 2013-10-21 2015-12-16 2015-12-16 106144559 HG421044 +HGNC:49248 ERVW-9 endogenous retrovirus group W member 9 other endogenous retrovirus Approved 1q25.2 01q25.2 endogenous retrovirus group W, member 9 2013-10-21 2015-12-16 2015-12-16 106699568 HG421045 +HGNC:49249 ERVW-10 endogenous retrovirus group W member 10 other endogenous retrovirus Approved 1q32.1 01q32.1 endogenous retrovirus group W, member 10 2013-10-21 2015-12-16 2015-12-16 106144579 HG421046 +HGNC:49250 ERVW-11 endogenous retrovirus group W member 11 other endogenous retrovirus Approved 1q42.13 01q42.13 endogenous retrovirus group W, member 11 2013-10-21 2015-12-16 2015-12-16 106144560 HG421047 +HGNC:49251 ERVW-12 endogenous retrovirus group W member 12 other endogenous retrovirus Approved 2p16.2 02p16.2 endogenous retrovirus group W, member 12 2013-10-21 2015-12-16 2015-12-16 106144580 HG421048 +HGNC:49252 ERVW-13 endogenous retrovirus group W member 13 other endogenous retrovirus Approved 2q13 02q13 endogenous retrovirus group W, member 13 2013-10-21 2015-12-16 2015-12-16 106144576 HG421049 +HGNC:49253 ERVW-14 endogenous retrovirus group W member 14 other endogenous retrovirus Approved 2q31.2 02q31.2 endogenous retrovirus group W, member 14 2013-10-21 2015-12-16 2015-12-16 106144561 HG421050 +HGNC:49254 ERVW-15 endogenous retrovirus group W member 15 other endogenous retrovirus Approved 4p16.1 04p16.1 endogenous retrovirus group W, member 15 2013-10-21 2015-12-16 2015-12-16 106144597 HG421053 +HGNC:49255 ERVW-16 endogenous retrovirus group W member 16 other endogenous retrovirus Approved 4q28.3 04q28.3 endogenous retrovirus group W, member 16 2013-10-21 2015-12-16 2015-12-16 106144581 HG421054 +HGNC:49256 ERVW-17 endogenous retrovirus group W member 17 other endogenous retrovirus Approved 6q21 06q21 endogenous retrovirus group W, member 17 2013-10-21 2015-12-16 2015-12-16 106144567 HG421036 +HGNC:49306 ERVW-18 endogenous retrovirus group W member 18 other endogenous retrovirus Approved 6q24.2 06q24.2 endogenous retrovirus group W, member 18 2013-10-21 2015-12-16 2015-12-16 106144562 HG421056 +HGNC:49307 ERVW-19 endogenous retrovirus group W member 19 other endogenous retrovirus Approved 6q27 06q27 endogenous retrovirus group W, member 19 2013-10-21 2015-12-16 2015-12-16 106144571 HG421057 +HGNC:49308 ERVW-20 endogenous retrovirus group W member 20 other endogenous retrovirus Approved 8q21.11 08q21.11 endogenous retrovirus group W, member 20 2013-10-21 2015-12-16 2015-12-16 106144604 HG421059 +HGNC:49309 ERVW-21 endogenous retrovirus group W member 21 other endogenous retrovirus Approved 8q21.13 08q21.13 endogenous retrovirus group W, member 21 2013-10-21 2015-12-16 2015-12-16 106144587 HG421060 +HGNC:49310 ERVW-22 endogenous retrovirus group W member 22 other endogenous retrovirus Approved 9p13.3 09p13.3 endogenous retrovirus group W, member 22 2013-10-21 2015-12-16 2015-12-16 106144563 HG421061 +HGNC:49311 ERVW-23 endogenous retrovirus group W member 23 other endogenous retrovirus Approved 12p13.31 12p13.31 endogenous retrovirus group W, member 23 2013-10-21 2015-12-16 2015-12-16 106144603 HG421062 +HGNC:49312 ERVW-24 endogenous retrovirus group W member 24 other endogenous retrovirus Approved 12q13.13 12q13.13 endogenous retrovirus group W, member 24 2013-10-21 2015-12-16 2015-12-16 106144564 HG421038 +HGNC:49313 ERVW-25 endogenous retrovirus group W member 25 other endogenous retrovirus Approved 13q13.3 13q13.3 endogenous retrovirus group W, member 25 2013-10-21 2015-12-16 2015-12-16 106144605 HG421063 +HGNC:49314 ERVW-26 endogenous retrovirus group W member 26 other endogenous retrovirus Approved 14q21.3 14q21.3 endogenous retrovirus group W, member 26 2013-10-21 2015-12-16 2015-12-16 106144572 HG421039 +HGNC:49315 ERVW-27 endogenous retrovirus group W member 27 other endogenous retrovirus Approved 14q32.12 14q32.12 endogenous retrovirus group W, member 27 2013-10-21 2015-12-16 2015-12-16 106144565 HG421064 +HGNC:49316 ERVW-28 endogenous retrovirus group W member 28 other endogenous retrovirus Approved 17q12b 17q12b endogenous retrovirus group W, member 28 2013-10-21 2015-12-16 2015-12-16 105694156 HG421041 +HGNC:49378 ERVW-29 endogenous retrovirus group W member 29 other endogenous retrovirus Approved 18p11.21 18p11.21 endogenous retrovirus group W, member 29 2013-10-21 2015-12-16 2015-12-16 106144583 HG421066 +HGNC:3462 ESA4 esterase A4 other unknown Approved 11q13-q22 11q13-q22 2001-06-22 2013-07-10 2090 "6946513|6604488" 133220 3.1.1.1 +HGNC:17474 ESAM endothelial cell adhesion molecule protein-coding gene gene with protein product Approved 11q24.2 11q24.2 W117m "V-set domain containing|Immunoglobulin like domain containing" "590|594" 2003-11-26 2015-09-11 90952 ENSG00000149564 OTTHUMG00000151986 uc001qav.5 AK075396 NM_138961 CCDS8453 Q96AP7 "11279107|11906820" MGI:1916774 RGD:1303286 ESAM 614281 +HGNC:3463 ESAT esterase activator other unknown Approved 14 14 2001-06-22 2013-03-15 2096 4508320 +HGNC:3464 ESB3 esterase B3 other unknown Approved 16 16 2001-06-22 2013-07-10 2097 3481956 133290 3.1.1.1 +HGNC:24645 ESCO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "ESO1|EFO1|KIAA1911" establishment of cohesion 1 homolog 1 (S. cerevisiae) 2005-01-04 2013-05-02 2013-05-02 114799 ENSG00000141446 OTTHUMG00000178919 uc002kth.2 AL832041 NM_052911 CCDS32800 Q5FWF5 "11572484|14576321|15958495" MGI:1925055 RGD:1596873 ESCO1 609674 +HGNC:27230 ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 EFO2 RBS "Roberts syndrome|establishment of cohesion 1 homolog 2 (S. cerevisiae)" 2005-01-04 2013-05-02 2014-11-18 157570 ENSG00000171320 OTTHUMG00000163901 uc003xgg.4 AF306679 NM_001017420 CCDS34872 Q56NI9 "15958495|16775838|15821733|16380922" MGI:1919238 RGD:1593313 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=ESCO2 ESCO2 609353 121610 +HGNC:3465 ESD esterase D protein-coding gene gene with protein product Approved 13q14.2 13q14.2 S-formylglutathione hydrolase esterase D/formylglutathione hydrolase 2001-06-22 2010-05-07 2016-10-05 2098 ENSG00000139684 OTTHUMG00000016878 uc001vbn.3 M13450 XM_005266278 CCDS9404 P10768 MGI:95421 RGD:1592114 ESD 133280 S09.990 3.1.2.12 +HGNC:15898 ESF1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding gene gene with protein product Approved 20p12.1 20p12.1 bA526K24.1 C20orf6 "chromosome 20 open reading frame 6|ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)" 2001-06-21 2006-11-13 2015-07-02 2015-08-25 51575 ENSG00000089048 OTTHUMG00000031906 uc002woj.3 NM_016649 CCDS13117 Q9H501 MGI:1913830 RGD:1306067 ESF1 +HGNC:3466 ESM1 endothelial cell specific molecule 1 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 endothelial cell-specific molecule 1 2000-01-07 2016-01-21 2016-10-05 11082 ENSG00000164283 OTTHUMG00000097010 uc003jpk.4 X89426 NM_007036 "CCDS3963|CCDS47206" Q9NQ30 8702785 MGI:1918940 RGD:71013 ESM1 601521 +HGNC:16856 ESPL1 extra spindle pole bodies like 1, separase protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "KIAA0165|ESP1|SEPA" "separin|separase|separin, cysteine protease" "extra spindle poles like 1 (S. cerevisiae)|extra spindle pole bodies homolog 1 (S. cerevisiae)" 2002-01-03 2015-07-02 2015-08-25 9700 ENSG00000135476 OTTHUMG00000169674 uc001sck.2 D79987 NM_012291 CCDS8852 Q14674 "8724849|16258266" MGI:2146156 RGD:1306266 ESPL1 604143 C50.002 3.4.22.49 +HGNC:13281 ESPN espin protein-coding gene gene with protein product Approved 1p36.31 01p36.31 DFNB36 deafness, autosomal recessive 36 Ankyrin repeat domain containing 403 2001-12-05 2014-11-19 83715 ENSG00000187017 OTTHUMG00000000753 uc001amy.3 AF134401 NM_031475 CCDS70 B1AK53 "10975527|15286153" MGI:1861630 RGD:620652 ESPN 606351 160240 +HGNC:27937 ESPNL espin-like protein-coding gene gene with protein product Approved 2q37.3 02q37.3 FLJ42568 Ankyrin repeat domain containing 403 2006-08-24 2014-11-19 339768 ENSG00000144488 OTTHUMG00000133335 uc002vxq.5 AK124559 NM_194312 "CCDS2525|CCDS77547" Q6ZVH7 12975309 MGI:2685402 RGD:1562432 ESPNL +HGNC:23285 ESPNP espin pseudogene pseudogene pseudogene Approved 1p36.13 01p36.13 2005-07-07 2014-11-19 284729 ENSG00000268869 OTTHUMG00000000803 AL035288 NR_026567 15286153 PGOHUM00000256862 +HGNC:3467 ESR1 estrogen receptor 1 protein-coding gene gene with protein product Approved 6q25.1-q25.2 06q25.1-q25.2 "NR3A1|Era" ESR Nuclear hormone receptors 71 2001-06-22 2016-10-12 2099 ENSG00000091831 OTTHUMG00000016103 uc003qom.5 X03635 NM_001328100 CCDS5234 P03372 3754034 MGI:1352467 RGD:2581 LRG_992|http://www.lrg-sequence.org/LRG/LRG_992 ESR1 133430 121614 objectId:620 +HGNC:3468 ESR2 estrogen receptor 2 protein-coding gene gene with protein product Approved 14q23.2-q23.3 14q23.2-q23.3 "NR3A2|Erb" ER beta estrogen receptor 2 (ER beta) Nuclear hormone receptors 71 1997-01-17 2016-03-18 2016-10-11 2100 ENSG00000140009 OTTHUMG00000141306 uc001xha.2 X99101 XM_017021079 "CCDS9762|CCDS32096|CCDS55920|CCDS61469|CCDS61470" Q92731 8769313 MGI:109392 RGD:2582 ESR2 601663 objectId:621 +HGNC:39079 ESRG embryonic stem cell related (non-protein coding) non-coding RNA RNA, long non-coding Approved 3p14.3 03p14.3 HESRG human embryonic stem cell related gene Long non-coding RNAs 788 2011-10-10 2010-10-10 2014-07-18 790952 ENSG00000265992 OTTHUMG00000179678 uc003dhj.4 NR_027122 Q1W209 "17803967|21861197" 611473 +HGNC:25966 ESRP1 epithelial splicing regulatory protein 1 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 FLJ20171 RBM35A RNA binding motif protein 35A RNA binding motif containing 725 2005-09-22 2009-03-10 2009-03-10 2015-08-27 54845 ENSG00000104413 OTTHUMG00000164587 uc003ygq.5 AK000178 NM_017697 "CCDS47895|CCDS47896|CCDS47897|CCDS47898" Q6NXG1 12477932 MGI:1917326 RGD:1560481 ESRP1 612959 +HGNC:26152 ESRP2 epithelial splicing regulatory protein 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ21918 RBM35B RNA binding motif protein 35B RNA binding motif containing 725 2005-09-22 2009-03-10 2009-03-10 2015-09-11 80004 ENSG00000103067 OTTHUMG00000137557 uc002evq.2 AK025571 NM_024939 CCDS10863 Q9H6T0 12477932 MGI:1924661 RGD:1310855 ESRP2 612960 +HGNC:3471 ESRRA estrogen related receptor alpha protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "ERR1|ERRalpha|NR3B1|ERRa" ESRL1 Nuclear hormone receptors 71 1997-04-25 2016-01-14 2016-10-05 2101 ENSG00000173153 OTTHUMG00000150641 uc001nzq.3 "X51416|L38487" NM_004451 "CCDS41667|CCDS60830" P11474 3267207 MGI:1346831 RGD:1583866 ESRRA 601998 objectId:622 +HGNC:3472 ESRRAP1 estrogen-related receptor alpha pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 ESRRAP estrogen-related receptor alpha pseudogene 1997-10-21 2008-02-01 2008-02-01 2016-10-05 144847 ENSG00000215572 OTTHUMG00000016495 AL359457 NG_001009 "9344655|18065488" PGOHUM00000248311 +HGNC:24647 ESRRAP2 estrogen-related receptor alpha pseudogene 2 pseudogene pseudogene Approved 13q12.11 13q12.11 ESTRRA 2007-07-27 2011-03-15 144832 ENSG00000235438 OTTHUMG00000016534 U85258 NR_000033 "9344655|3267207|18065488" PGOHUM00000248516 +HGNC:3473 ESRRB estrogen related receptor beta protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "ERR2|ERRbeta|NR3B2|ERRb" "ESRL2|DFNB35" deafness, autosomal recessive 35 Nuclear hormone receptors 71 1997-04-25 2016-01-14 2016-04-25 2103 ENSG00000119715 OTTHUMG00000160457 uc001xsq.2 X51417 XM_011536547 CCDS9850 O95718 "3267207|9344655|18179891" MGI:1346832 RGD:1359557 ESRRB 602167 160244 objectId:623 +HGNC:3474 ESRRG estrogen related receptor gamma protein-coding gene gene with protein product Approved 1q41 01q41 NR3B3 Nuclear hormone receptors 71 1998-02-17 2016-01-14 2016-01-14 2104 ENSG00000196482 OTTHUMG00000037025 uc001hld.2 AF058291 NM_206595 "CCDS1517|CCDS41468|CCDS58060|CCDS58061" P62508 "9676434|10072763" MGI:1347056 RGD:1303236 ESRRG 602969 objectId:624 +HGNC:14865 ESX1 ESX homeobox 1 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 ESXR1 ESX1L extraembryonic, spermatogenesis, homeobox 1 homolog (mouse) PRD class homeoboxes and pseudogenes 521 2001-03-14 2006-02-08 2007-07-11 2014-11-19 80712 ENSG00000123576 OTTHUMG00000022125 uc004ely.4 AL049631 NM_153448 CCDS14516 Q8N693 "11374906|17242862" MGI:1096388 RGD:1590738 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ESX1 ESX1 300154 8531 +HGNC:29534 ESYT1 extended synaptotagmin 1 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "MBC2|KIAA0747" FAM62A "family with sequence similarity 62 (C2 domain containing), member A|extended synaptotagmin-like protein 1" Extended synaptotagmins 827 2005-04-21 2009-06-23 2016-06-08 2016-06-08 23344 ENSG00000139641 OTTHUMG00000170197 uc001sjq.4 AK074368 NM_015292 "CCDS8904|CCDS53801" Q9BSJ8 "9872452|10350628|17672888" MGI:1344426 RGD:3053 ESYT1 616670 +HGNC:22211 ESYT2 extended synaptotagmin 2 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "KIAA1228|CHR2SYT" FAM62B "family with sequence similarity 62 (C2 domain containing), member B|extended synaptotagmin-like protein 2" Extended synaptotagmins 827 2005-04-21 2009-06-23 2016-06-08 2016-06-08 57488 ENSG00000117868 OTTHUMG00000151436 uc003wob.2 AB033054 NM_020728 CCDS34791 A0FGR8 17672888 MGI:1261845 RGD:1565705 ESYT2 616691 +HGNC:24295 ESYT3 extended synaptotagmin 3 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 CHR3SYT FAM62C "family with sequence similarity 62 (C2 domain containing), member C|extended synaptotagmin-like protein 3" Extended synaptotagmins 827 2005-04-21 2009-06-23 2016-06-08 2016-06-08 83850 ENSG00000158220 OTTHUMG00000147354 uc003esk.4 AJ303366 NM_031913 CCDS3101 A0FGR9 "11543631|17672888" MGI:1098699 RGD:1561304 ESYT3 616692 +HGNC:24648 ETAA1 Ewing tumor associated antigen 1 protein-coding gene gene with protein product Approved 2p14 02p14 ETAA16 Ewing's tumor-associated antigen 1 2006-08-14 2016-05-03 2016-05-03 54465 ENSG00000143971 OTTHUMG00000129545 uc002sdz.2 AJ242682 NM_019002 CCDS1882 Q9NY74 16003559 MGI:1915395 RGD:1587340 ETAA1 613196 +HGNC:3477 ETF1 eukaryotic translation termination factor 1 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "eRF1|TB3-1|RF1" "sup45 (yeast omnipotent suppressor 45) homolog-like 1|polypeptide chain release factor 1" "SUP45L1|ERF1|ERF" 1991-06-13 2014-11-19 2107 ENSG00000120705 OTTHUMG00000129199 uc003ldc.6 AF095901 NM_004730 "CCDS4207|CCDS75313|CCDS75314" P62495 "1546371|7990965" MGI:2385071 RGD:1305712 ETF1 600285 +HGNC:3478 ETF1P1 eukaryotic translation termination factor 1 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 HCGVII SUP45L2 1999-08-12 2016-10-05 6824 ENSG00000232757 OTTHUMG00000031163 NG_001028 "1546371|10413110" PGOHUM00000301738 +HGNC:3479 ETF1P2 eukaryotic translation termination factor 1 pseudogene 2 pseudogene pseudogene Approved 7q36.1 07q36.1 SUP45L3 1999-08-12 2014-11-19 6825 ENSG00000240132 OTTHUMG00000157354 NG_001198 "1546371|10413110" +HGNC:3480 ETF1P3 eukaryotic translation termination factor 1 pseudogene 3 pseudogene pseudogene Approved Xq12 Xq12 SUP45L4 1999-08-12 2013-09-20 100132121 ENSG00000233833 OTTHUMG00000021725 AF110131 NG_009869 "1546371|10413110" PGOHUM00000241819 +HGNC:3481 ETFA electron transfer flavoprotein alpha subunit protein-coding gene gene with protein product Approved 15q24.2-q24.3 15q24.2-q24.3 "GA2|EMA|MADD" glutaric aciduria II electron-transfer-flavoprotein, alpha polypeptide 1986-01-01 2016-01-05 2016-10-11 2108 ENSG00000140374 OTTHUMG00000172586 uc002bbt.3 J04058 NM_000126 "CCDS32299|CCDS45311" P13804 MGI:106092 RGD:628747 ETFA 608053 121619 +HGNC:3482 ETFB electron transfer flavoprotein beta subunit protein-coding gene gene with protein product Approved 19q13.41 19q13.41 electron-transfer-flavoprotein, beta polypeptide 1990-06-11 2016-01-05 2016-01-15 2109 ENSG00000105379 OTTHUMG00000182903 uc002pwh.4 X71129 NM_001014763 "CCDS12828|CCDS33085" P38117 MGI:106098 RGD:1303312 ETFB 130410 121624 +HGNC:28739 ETFBKMT electron transfer flavoprotein beta subunit lysine methyltransferase protein-coding gene gene with protein product Approved 12p11.21 12p11.21 "DKFZp451L235|MGC50559" "C12orf72|METTL20" "chromosome 12 open reading frame 72|methyltransferase like 20" Methyltransferase like 963 2008-08-12 2016-01-05 2016-01-05 2016-01-05 254013 ENSG00000139160 uc009zjr.4 BC039535 NM_173802 CCDS8724 Q8IXQ9 "25023281|25416781" MGI:2443575 RGD:735147 615256 +HGNC:3483 ETFDH electron transfer flavoprotein dehydrogenase protein-coding gene gene with protein product Approved 4q32.1 04q32.1 ETFQO electron-transferring-flavoprotein dehydrogenase 1993-12-13 2016-01-05 2016-10-05 2110 ENSG00000171503 OTTHUMG00000161684 uc003iqb.5 S69232 NM_004453 "CCDS3800|CCDS64090" Q16134 MGI:106100 RGD:735052 ETFDH 231675 121626 +HGNC:27052 ETFRF1 electron transfer flavoprotein regulatory factor 1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 LYRM5 LYR motif containing 5 LYR motif containing 635 2006-09-19 2016-08-02 2016-08-02 2016-08-09 144363 ENSG00000205707 OTTHUMG00000171190 uc001rgn.4 AK057730 NM_001001660 CCDS53764 Q6IPR1 27499296 MGI:1914886 RGD:2320673 +HGNC:23287 ETHE1 ETHE1, persulfide dioxygenase protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "YF13H12|HSCO" ethylmalonic encephalopathy 1 2003-12-15 2016-04-28 2016-10-05 23474 ENSG00000105755 OTTHUMG00000182697 uc002owp.3 NM_014297 CCDS12622 O95571 19136963 MGI:1913321 RGD:1311034 ETHE1 608451 121629 1.13.11.18 +HGNC:3486 ETM1 essential tremor 1 phenotype phenotype only Approved 3q13 03q13 FET1 1997-12-05 2011-02-14 9288103 +HGNC:3487 ETM2 essential tremor 2 phenotype phenotype only Approved 2p25-p22 02p25-p22 ETM 1997-12-19 2008-05-15 2112 9399207 602134 +HGNC:24649 ETNK1 ethanolamine kinase 1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "EKI1|EKI" 2004-07-09 2016-10-05 55500 ENSG00000139163 OTTHUMG00000169008 uc001rft.4 BC006111 NM_018638 "CCDS8698|CCDS41760" Q9HBU6 "11912161|11044454" MGI:1922570 RGD:1308204 ETNK1 609858 +HGNC:25575 ETNK2 ethanolamine kinase 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "FLJ10761|EKI2" 2004-07-09 2015-09-11 55224 ENSG00000143845 OTTHUMG00000036061 uc001hao.5 AK001623 NM_018208 "CCDS1442|CCDS73006" Q9NVF9 12477932 MGI:2443760 RGD:1305304 ETNK2 609859 +HGNC:14404 ETNPPL ethanolamine-phosphate phospho-lyase protein-coding gene gene with protein product Approved 4q25 04q25 AGXT2L1 alanine-glyoxylate aminotransferase 2-like 1 2001-01-19 2013-06-12 2013-06-12 2014-11-19 64850 ENSG00000164089 OTTHUMG00000161036 AJ298293 NM_031279 "CCDS3682|CCDS54792|CCDS54793|CCDS82944" Q8TBG4 "7592550|22241472" MGI:1919010 RGD:1590098 614682 4.2.3.2 +HGNC:3488 ETS1 ETS proto-oncogene 1, transcription factor protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "FLJ10768|ETS-1" "Avian erythroblastosis virus E26 (v-ets) oncogene homolog-1|ets protein" EWSR2 v-ets avian erythroblastosis virus E26 oncogene homolog 1 ETS transcription factor family 534 1986-01-01 2016-02-24 2016-10-05 2113 ENSG00000134954 OTTHUMG00000165799 uc010sbs.2 NM_005238 "CCDS8475|CCDS44767|CCDS53724|CCDS81648" P14921 1522903 MGI:95455 RGD:2583 ETS1 164720 369352 +HGNC:3489 ETS2 ETS proto-oncogene 2, transcription factor protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "v-ets erythroblastosis virus E26 oncogene homolog 2 (avian)|v-ets avian erythroblastosis virus E26 oncogene homolog 2" ETS transcription factor family 534 2001-06-22 2016-02-24 2016-10-05 2114 ENSG00000157557 OTTHUMG00000090769 uc002yxf.4 XM_017028290 CCDS13659 P15036 17986575 MGI:95456 RGD:1584977 ETS2 164740 +HGNC:3490 ETV1 ETS variant 1 protein-coding gene gene with protein product Approved 7p21.2 07p21.2 ER81 ets variant gene 1 ETS transcription factor family 534 1994-05-02 2016-02-25 2016-10-05 2115 ENSG00000006468 OTTHUMG00000152403 uc021zzs.2 NM_004956 "CCDS55083|CCDS55084|CCDS55085|CCDS55086|CCDS55087|CCDS55088" P50549 1340465 MGI:99254 RGD:1312007 ETV1 600541 121633 +HGNC:3491 ETV2 ETS variant 2 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 ER71 ets variant gene 2 ETS transcription factor family 534 1994-05-02 2016-02-25 2016-10-05 2116 ENSG00000105672 OTTHUMG00000150545 uc002oar.2 AF000671 XM_209182 "CCDS32995|CCDS74341|CCDS77281" O00321 1340465 MGI:99253 RGD:1310603 ETV2 609358 +HGNC:3492 ETV3 ETS variant 3 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 PE-1 ets variant gene 3, ETS family transcriptional repressor ETS transcription factor family 534 1994-12-15 2016-02-25 2016-10-05 2117 ENSG00000117036 OTTHUMG00000034298 uc001fqr.3 BC022868 NM_005240 "CCDS1164|CCDS44250" P41162 8020980 MGI:1350926 RGD:1311577 ETV3 164873 +HGNC:33834 ETV3L ETS variant 3 like protein-coding gene gene with protein product Approved 1q23.1 01q23.1 FLJ16478 ets variant gene 3-like ETS transcription factor family 534 2007-12-14 2016-02-25 2016-02-25 440695 ENSG00000253831 OTTHUMG00000041325 uc001fqq.3 AK131392 NM_001004341 CCDS30893 Q6ZN32 MGI:3646099 RGD:1562620 ETV3L +HGNC:3493 ETV4 ETS variant 4 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "E1A-F|E1AF|PEA3" E1A enhancer binding protein ets variant gene 4 (E1A enhancer-binding protein, E1AF) ETS transcription factor family 534 1995-03-27 2016-02-25 2016-02-25 2118 ENSG00000175832 OTTHUMG00000180884 uc002idx.5 U18018 NM_001986 "CCDS11465|CCDS58553|CCDS59292" P43268 "8530053|1547944" MGI:99423 RGD:1306524 ETV4 600711 235504 +HGNC:3494 ETV5 ETS variant 5 protein-coding gene gene with protein product Approved 3q27.2 03q27.2 ERM ets-related molecule ets variant gene 5 (ets-related molecule) ETS transcription factor family 534 1996-07-26 2016-02-25 2016-10-05 2119 ENSG00000244405 OTTHUMG00000156639 uc003fpz.4 BC007333 NM_004454 CCDS33906 P41161 8152800 MGI:1096867 RGD:1309590 ETV5 601600 +HGNC:40222 ETV5-AS1 ETV5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.2 03q27.2 ETV5 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-18 100873934 ENSG00000234197 OTTHUMG00000156638 uc062ram.1 +HGNC:3495 ETV6 ETS variant 6 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 TEL TEL oncogene ets variant gene 6 (TEL oncogene) ETS transcription factor family 534 1995-11-28 2016-02-25 2016-10-12 2120 ENSG00000139083 OTTHUMG00000168538 uc001qzz.4 BC043399 NM_001987 CCDS8643 P41212 7731705 MGI:109336 LRG_609|http://www.lrg-sequence.org/LRG/LRG_609 ETV6 600618 139165 +HGNC:18160 ETV7 ETS variant 7 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "TEL2|TEL-2" TEL2 oncogene ets variant gene 7 (TEL2 oncogene) ETS transcription factor family 534 2003-05-19 2016-02-25 2016-10-05 51513 ENSG00000010030 OTTHUMG00000014594 uc011dtl.3 AF116508 NM_016135 "CCDS4819|CCDS56422|CCDS56423|CCDS56424|CCDS56425|CCDS75440|CCDS75441|CCDS78131" Q9Y603 "10828014|11108721" ETV7 605255 +HGNC:25816 EVA1A eva-1 homolog A, regulator of programmed cell death protein-coding gene gene with protein product Approved 2p12 02p12 FLJ13391 "TMEM166|FAM176A" "transmembrane protein 166|family with sequence similarity 176, member A|eva-1 homolog A (C. elegans)" 2006-07-26 2012-11-05 2016-02-15 2016-02-15 84141 ENSG00000115363 OTTHUMG00000129991 uc002snk.1 BC016157 NM_032181 CCDS1959 Q9H8M9 "22227058|25363290" MGI:2385247 RGD:1559797 +HGNC:25558 EVA1B eva-1 homolog B protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ10647 "C1orf78|FAM176B" "chromosome 1 open reading frame 78|family with sequence similarity 176, member B|eva-1 homolog B (C. elegans)" 2005-05-23 2012-11-05 2016-07-22 2016-07-22 55194 ENSG00000142694 OTTHUMG00000007867 uc001caj.1 AK001509 NM_018166 CCDS406 Q9NVM1 14702039 MGI:1922063 RGD:1308876 +HGNC:13239 EVA1C eva-1 homolog C protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "B18|PRED34|B19" "C21orf64|C21orf63|FAM176C" "chromosome 21 open reading frame 64|chromosome 21 open reading frame 63|family with sequence similarity 176, member C|eva-1 homolog C (C. elegans)" 2000-09-25 2012-11-05 2016-07-22 2016-07-22 59271 ENSG00000166979 OTTHUMG00000064922 uc002ypr.3 AF358258 NM_058187 "CCDS13614|CCDS68186" P58658 "11707072|19470522|24040182" MGI:1918217 RGD:1307569 +HGNC:3497 EVC EvC ciliary complex subunit 1 protein-coding gene gene with protein product Approved 4p16.2 04p16.2 DWF-1 "Ellis van Creveld syndrome|Ellis van Creveld protein" 1995-04-24 2016-02-15 2016-02-15 2121 ENSG00000072840 OTTHUMG00000090427 uc003gil.2 AF216184 XR_924920 "CCDS3383|CCDS77896" P57679 "10700184|24582806" MGI:1890596 RGD:735186 EVC 604831 121636 +HGNC:19747 EVC2 EvC ciliary complex subunit 2 protein-coding gene gene with protein product Approved 4p16.2 04p16.2 LBN limbin Ellis van Creveld syndrome 2 2003-04-11 2016-02-15 2016-02-15 132884 ENSG00000173040 OTTHUMG00000125493 uc003gij.4 AB083067 NM_147127 "CCDS3382|CCDS54718" Q86UK5 "12136126|12571802|24582806" MGI:1915775 RGD:1310417 EVC2 607261 121639 +HGNC:3499 EVI2A ecotropic viral integration site 2A protein-coding gene gene with protein product Approved 17q11.2 17q11.2 EVDA EVI2 1990-08-03 2008-07-18 2123 ENSG00000126860 OTTHUMG00000159306 uc002hgl.4 M55267 NM_014210 "CCDS32608|CCDS42293" P22794 2117566 MGI:95458 RGD:1593824 EVI2A 158380 +HGNC:3500 EVI2B ecotropic viral integration site 2B protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "D17S376|EVDB|CD361" CD molecules 471 1990-11-07 2014-11-18 2124 ENSG00000185862 OTTHUMG00000132869 uc002hgk.3 NM_006495 CCDS11266 P34910 1903357 MGI:1890682 RGD:6495961 EVI2B 158381 +HGNC:3501 EVI5 ecotropic viral integration site 5 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 NB4S neuroblastoma stage 4S gene 1999-12-07 2016-10-05 7813 ENSG00000067208 OTTHUMG00000010895 uc001dox.3 AF008915 NM_005665 "CCDS30774|CCDS76179" O60447 9618176 MGI:104736 RGD:2322879 EVI5 602942 +HGNC:30464 EVI5L ecotropic viral integration site 5 like protein-coding gene gene with protein product Approved 19p13.2 19p13.2 2004-07-30 2016-02-15 2016-02-15 115704 ENSG00000142459 OTTHUMG00000182454 uc002min.4 BC014111 NM_145245 "CCDS12188|CCDS54209" Q96CN4 23669355 MGI:2442167 RGD:1561962 EVI5L +HGNC:20234 EVL Enah/Vasp-like protein-coding gene gene with protein product Approved 14q32.2 14q32.2 RNB6 ENAH/VASPs 946 2003-01-10 2014-08-13 51466 ENSG00000196405 OTTHUMG00000171530 uc001ygu.4 AF112209 XR_001750355 "CCDS9955|CCDS81851" Q9UI08 "10945997|10993894" MGI:1194884 RGD:621150 EVL 616912 +HGNC:3503 EVPL envoplakin protein-coding gene gene with protein product Approved 17q25.1 17q25.1 EVPK Plakins 939 1996-03-12 2015-09-11 2125 ENSG00000167880 OTTHUMG00000180053 uc002jqi.3 U53786 NM_001988 "CCDS11737|CCDS82207" Q92817 "8938451|10409435" MGI:107507 RGD:1306141 EVPL 601590 +HGNC:35236 EVPLL envoplakin like protein-coding gene gene with protein product Approved 17p11.2 17p11.2 Plakins 939 2008-10-24 2016-06-10 2016-06-10 645027 ENSG00000214860 OTTHUMG00000059095 uc002gte.4 NM_001145127 CCDS45626 A8MZ36 EVPLL +HGNC:32785 EVR3 exudative vitreoretinopathy 3 phenotype phenotype only Approved 11p13-p12 11p13-p12 2006-05-10 2008-05-14 81864 11179025 605750 +HGNC:3506 EVX1 even-skipped homeobox 1 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 eve, even-skipped homeobox homolog 1 (Drosophila) HOXL subclass homeoboxes 518 1992-04-06 2007-02-15 2015-08-27 2128 ENSG00000106038 OTTHUMG00000023093 uc003szd.2 NM_001989 CCDS5413 P49640 1684419 MGI:95461 RGD:1565788 EVX1 142996 8436 +HGNC:40223 EVX1-AS EVX1 antisense RNA non-coding RNA RNA, long non-coding Approved 7p15.2 07p15.2 EVX1-AS1 EVX1 antisense RNA 1 (non-protein coding) EVX1 antisense RNA (non-protein coding) 2012-05-03 2012-08-15 2014-11-19 101410536 ENSG00000253405 OTTHUMG00000159991 uc064cib.1 "DB455833|DB260732" NR_120507 +HGNC:3507 EVX2 even-skipped homeobox 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 eve, even-skipped homeobox homolog 2 (Drosophila) HOXL subclass homeoboxes 518 1990-09-30 2007-02-15 2015-08-27 344191 ENSG00000174279 OTTHUMG00000154173 uc010zeu.3 NM_001080458 CCDS33333 Q03828 1675198 MGI:95462 RGD:1305594 EVX2 142991 8437 +HGNC:26596 EWSAT1 Ewing sarcoma associated transcript 1 non-coding RNA RNA, long non-coding Approved 15q23 15q23 FLJ33768 "TMEM84|NCRNA00277|LINC00277" "transmembrane protein 84|non-protein coding RNA 277|long intergenic non-protein coding RNA 277" 2005-10-25 2014-11-20 2014-11-20 2014-11-20 283673 ENSG00000212766 OTTHUMG00000133319 AK091087 NR_026949 25401475 616492 +HGNC:3508 EWSR1 EWS RNA binding protein 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 EWS Ewing sarcoma breakpoint region 1 "Zinc fingers RANBP2-type |RNA binding motif containing" "89|725" 1992-11-27 2015-11-05 2016-04-25 2130 ENSG00000182944 OTTHUMG00000151107 uc003aev.4 NM_005243 "CCDS13851|CCDS13852|CCDS54512|CCDS54513|CCDS54514" Q01844 1522903 MGI:99960 RGD:1307258 EWSR1 133450 121642 +HGNC:28507 EXD1 exonuclease 3'-5' domain containing 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 MGC33637 EXDL1 exonuclease 3'-5' domain-like 1 2005-10-26 2009-02-24 2009-02-24 2014-11-18 161829 ENSG00000178997 OTTHUMG00000130232 uc001znk.5 BC030628 NM_152596 "CCDS10072|CCDS66738" Q8NHP7 12477932 MGI:3045306 RGD:1561009 EXD1 +HGNC:20217 EXD2 exonuclease 3'-5' domain containing 2 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 FLJ10738 "C14orf114|EXDL2" "chromosome 14 open reading frame 114|exonuclease 3'-5' domain-like 2" 2003-01-15 2009-02-24 2009-02-24 2014-11-19 55218 ENSG00000081177 OTTHUMG00000154496 uc010tte.2 AK001600 XM_017021421 "CCDS9793|CCDS53902" Q9NVH0 MGI:1922485 RGD:1311087 EXD2 616940 +HGNC:26023 EXD3 exonuclease 3'-5' domain containing 3 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "LOC54932|FLJ20433|mut-7" 2009-03-04 2014-11-19 54932 ENSG00000187609 OTTHUMG00000156149 uc004cmp.4 NM_017820 "CCDS48066|CCDS75942" "Q8N9H8|Q9NX53" EXD3 +HGNC:3511 EXO1 exonuclease 1 protein-coding gene gene with protein product Approved 1q43 01q43 "HEX1|hExoI" rad2 nuclease family member, homolog of S. cerevisiae exonuclease 1 Exonucleases 544 1999-07-07 2015-02-02 9156 ENSG00000174371 OTTHUMG00000039965 uc001hzh.4 AF042282 NM_006027 "CCDS1620|CCDS44336" Q9UQ84 "9685493|9788596" MGI:1349427 RGD:1309465 EXO1 606063 +HGNC:26115 EXO5 exonuclease 5 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 FLJ21144 "C1orf176|DEM1" "chromosome 1 open reading frame 176|defects in morphology 1 homolog (S. cerevisiae)" Exonucleases 544 2005-07-25 2012-10-30 2012-10-30 2014-11-19 64789 ENSG00000164002 OTTHUMG00000007305 uc001cfp.4 AK024797 NM_022774 CCDS453 Q9H790 23095756 MGI:1920422 RGD:1309802 +HGNC:30380 EXOC1 exocyst complex component 1 protein-coding gene gene with protein product Approved 4q12 04q12 "SEC3|FLJ10893|BM-102|Sec3p" SEC3L1 SEC3-like 1 (S. cerevisiae) Exocyst complex 1055 2004-01-08 2005-11-01 2005-11-01 2015-08-25 55763 ENSG00000090989 OTTHUMG00000102165 uc003hbf.2 AK027047 NM_018261 "CCDS3502|CCDS3503" Q9NV70 "11042152|11406615" MGI:2445020 RGD:1304939 EXOC1 607879 +HGNC:24968 EXOC2 exocyst complex component 2 protein-coding gene gene with protein product Approved 6p25.3 06p25.3 "FLJ11026|Sec5p" SEC5L1 SEC5-like 1 (S. cerevisiae) Exocyst complex 1055 2004-01-08 2005-11-01 2005-11-01 2014-11-19 55770 ENSG00000112685 OTTHUMG00000137437 uc003mtd.5 AJ420556 NM_018303 CCDS34327 Q96KP1 "12575951|12459492" MGI:1913732 RGD:619961 EXOC2 615329 +HGNC:30378 EXOC3 exocyst complex component 3 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 Sec6p SEC6L1 SEC6-like 1 (S. cerevisiae) Exocyst complex 1055 2004-01-08 2005-11-01 2005-11-01 2015-08-25 11336 ENSG00000180104 OTTHUMG00000162205 uc003jba.4 BC034427 NM_007277 CCDS54830 O60645 8619474 MGI:2443972 RGD:621790 EXOC3 608186 +HGNC:25175 EXOC3-AS1 EXOC3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p15.33 05p15.33 C5orf55 chromosome 5 open reading frame 55 2009-04-06 2014-12-10 2014-12-10 2014-12-10 116349 ENSG00000221990 OTTHUMG00000162235 BC014011 NR_126522 Q8N2X6 12477932 +HGNC:27540 EXOC3L1 exocyst complex component 3 like 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ35539|FLJ35587" EXOC3L "exocyst complex component 3-like|exocyst complex component 3-like 1" 2006-08-08 2011-01-31 2016-03-17 2016-03-17 283849 ENSG00000179044 OTTHUMG00000137508 uc002erx.1 AK092858 NM_178516 CCDS10832 Q86VI1 12477932 MGI:3041195 RGD:1311132 EXOC3L1 614117 +HGNC:30162 EXOC3L2 exocyst complex component 3 like 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "FLJ36147|XTP7" 2007-01-19 2016-06-10 2016-06-10 90332 ENSG00000130201 OTTHUMG00000155018 uc002pay.1 AK093466 NM_138568 CCDS12657 Q2M3D2 21566143 MGI:1921713 RGD:1592539 EXOC3L2 616927 +HGNC:20120 EXOC3L4 exocyst complex component 3 like 4 protein-coding gene gene with protein product Approved 14q32.32 14q32.32 C14orf73 chromosome 14 open reading frame 73 2003-01-13 2011-01-31 2016-03-11 2016-03-11 91828 ENSG00000205436 OTTHUMG00000171888 uc001ymk.4 AK000671 XM_941093 CCDS32163 Q17RC7 MGI:1921363 RGD:1307749 EXOC3L4 +HGNC:30389 EXOC4 exocyst complex component 4 protein-coding gene gene with protein product Approved 7q33 07q33 "KIAA1699|MGC27170|SEC8|Sec8p" SEC8L1 SEC8-like 1 (S. cerevisiae) Exocyst complex 1055 2004-01-08 2005-11-01 2005-11-01 2016-10-05 60412 ENSG00000131558 OTTHUMG00000155259 uc003vrk.4 AL831989 NM_021807 "CCDS5829|CCDS43648" Q96A65 "11214970|12687004" MGI:1096376 RGD:621791 EXOC4 608185 +HGNC:10696 EXOC5 exocyst complex component 5 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 "SEC10|SEC10P" SEC10L1 "SEC10 (S. cerevisiae)-like 1|SEC10-like 1 (S. cerevisiae)" Exocyst complex 1055 1999-09-09 2005-11-01 2005-11-01 2015-08-25 10640 ENSG00000070367 OTTHUMG00000171309 uc001xct.4 U85946 NM_006544 CCDS45111 O00471 9119050 MGI:2145645 RGD:708408 EXOC5 604469 +HGNC:43870 EXOC5P1 exocyst complex component 5 pseudogene 1 pseudogene pseudogene Approved 4q13.1 04q13.1 2012-04-04 2012-04-04 644548 ENSG00000180673 OTTHUMG00000160716 NG_022058 PGOHUM00000245929 +HGNC:23196 EXOC6 exocyst complex component 6 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "SEC15L|FLJ1125|DKFZp761I2124|MGC33397|Sec15p|EXOC6A" SEC15L1 SEC15-like 1 (S. cerevisiae) Exocyst complex 1055 2003-10-06 2006-11-07 2006-11-07 2015-08-27 54536 ENSG00000138190 OTTHUMG00000018767 uc001kig.4 BC028395 NM_019053 "CCDS7424|CCDS31247|CCDS81487" Q8TAG9 8889548 MGI:1351611 RGD:3653 EXOC6 609672 +HGNC:17085 EXOC6B exocyst complex component 6B protein-coding gene gene with protein product Approved 2p13.2 02p13.2 KIAA0919 "SEC15L2|SEC15B" "SEC15-like 2 (S. cerevisiae)|SEC15 homolog B (S. cerevisiae)" Exocyst complex 1055 2003-10-06 2006-11-07 2006-11-07 2015-09-11 23233 ENSG00000144036 OTTHUMG00000152723 uc010fep.4 AB023136 XM_039570 "CCDS46333|CCDS82468" Q9Y2D4 "10231032|11406615" MGI:1923164 RGD:1560638 EXOC6B 607880 +HGNC:23214 EXOC7 exocyst complex component 7 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "EXO70|KIAA1067|YJL085W|Exo70p" Exocyst complex 1055 2004-01-13 2016-10-05 23265 ENSG00000182473 OTTHUMG00000150720 uc002jqr.5 BC029432 NM_015219 "CCDS11741|CCDS32738|CCDS45781|CCDS45782|CCDS45784|CCDS74164|CCDS45783" Q9UPT5 12477932 MGI:1859270 RGD:6491410 EXOC7 608163 +HGNC:43871 EXOC7P1 exocyst complex component 7 pseudogene 1 pseudogene pseudogene Approved 4q25 04q25 2012-04-04 2012-04-04 391681 ENSG00000250485 OTTHUMG00000161029 NG_022023 PGOHUM00000245649 +HGNC:24659 EXOC8 exocyst complex component 8 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "SEC84|EXO84|Exo84p" Exocyst complex 1055 2004-01-09 2015-08-25 149371 ENSG00000116903 OTTHUMG00000038025 uc001huq.4 AL117352 NM_175876 CCDS1593 Q8IYI6 12477932 MGI:2142527 RGD:620245 EXOC8 615283 +HGNC:3347 EXOG exo/endonuclease G protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "ENGL-a|ENGL|ENGL-b" "ENDOGL1|ENDOGL2" "endonuclease G-like 1|endonuclease G-like 2|endo/exonuclease (5'-3'), endonuclease G-like" 1999-05-25 2009-01-08 2016-09-27 2016-10-05 9941 ENSG00000157036 OTTHUMG00000131295 uc003cih.3 AB020523 NM_005107 "CCDS2680|CCDS46795" Q9Y2C4 "10231028|18187503" MGI:2143333 RGD:1304628 EXOG 604051 3.1.30.- +HGNC:44547 EXOGP1 endo/exonuclease (5'-3'), endonuclease G-like pseudogene 1 pseudogene pseudogene Approved 18q11.1 18q11.1 2012-11-15 2012-11-15 100128324 ENSG00000263748 OTTHUMG00000178591 NG_009889 PGOHUM00000234891 +HGNC:17286 EXOSC1 exosome component 1 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "hCsl4p|Csl4p|CSL4|Ski4p|SKI4|CGI-108|p13" CSL4 exosomal core protein homolog (yeast) Exosome complex 817 2004-03-26 2016-10-05 51013 ENSG00000171311 OTTHUMG00000018854 uc001kni.4 AF151866 XM_011539847 "CCDS7459|CCDS81492" Q9Y3B2 "11812149|11719186" MGI:1913833 RGD:1591855 EXOSC1 606493 +HGNC:17097 EXOSC2 exosome component 2 protein-coding gene gene with protein product Approved 9q34.12 09q34.12 "hRrp4p|Rrp4p|RRP4|p7" homolog of yeast RRP4 (ribosomal RNA processing 4), 3' 5' exoribonuclease (RRP4) Exosome complex 817 2004-03-26 2016-10-05 23404 ENSG00000130713 OTTHUMG00000020811 uc004bzu.4 AK001916 NM_014285 "CCDS6935|CCDS65160|CCDS65161" Q13868 "8600032|1538749" MGI:2385133 RGD:1306573 EXOSC2 602238 +HGNC:17944 EXOSC3 exosome component 3 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 "hRrp40p|Rrp40p|RRP40|CGI-102|p10|hRrp-40" "exosome component Rrp40|CGI-102 protein" Exosome complex 817 2004-03-26 2016-10-05 51010 ENSG00000107371 OTTHUMG00000019932 uc004aal.4 BC002437 NM_016042 "CCDS35016|CCDS43805" Q9NQT5 "10810093|11110791" MGI:1913612 RGD:1304739 EXOSC3 606489 303747 +HGNC:33989 EXOSC3P1 exosome component 3 pseudogene 1 pseudogene pseudogene Approved 21q22.11 21q22.11 2008-02-05 2011-03-17 100151640 ENSG00000229007 OTTHUMG00000064920 NG_007654 PGOHUM00000239164 +HGNC:33990 EXOSC3P2 exosome component 3 pseudogene 2 pseudogene pseudogene Approved 19p13.2 19p13.2 2008-02-05 2008-02-05 2016-07-25 100190954 ENSG00000269763 OTTHUMG00000182506 NG_008711 PGOHUM00000294853 +HGNC:18189 EXOSC4 exosome component 4 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "hRrp41p|FLJ20591|Rrp41p|RRP41|RRP41A|Ski6p|SKI6|p12A" exosome component Rrp41 Exosome complex 817 2004-03-26 2004-03-26 54512 ENSG00000178896 OTTHUMG00000165437 uc003zau.4 AF281133 NM_019037 CCDS6414 Q9NPD3 11110791 MGI:1923576 RGD:1310986 EXOSC4 606491 +HGNC:24662 EXOSC5 exosome component 5 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "hRrp46p|Rrp46p|RRP46|RRP41B|MGC12901|p12B" exosome component Rrp46 Exosome complex 817 2004-03-26 2016-10-05 56915 ENSG00000077348 OTTHUMG00000182759 uc002oqo.4 AF285785 NM_020158 CCDS12580 Q9NQT4 "11110791|11812149" MGI:107889 RGD:1307861 EXOSC5 606492 +HGNC:19055 EXOSC6 exosome component 6 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "MTR3|hMtr3p|Mtr3p|EAP4|p11" Mtr3 (mRNA transport regulator 3)-homolog (yeast) Exosome complex 817 2004-03-26 2014-11-19 118460 ENSG00000223496 OTTHUMG00000137578 uc002eym.2 BC052252 NM_058219 CCDS10887 Q5RKV6 "11719186|12419256" MGI:1919794 RGD:1309832 EXOSC6 606490 +HGNC:28112 EXOSC7 exosome component 7 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "hRrp42p|Rrp42p|RRP42|EAP1|KIAA0116|p8" Exosome complex 817 2004-03-26 2016-10-05 23016 ENSG00000075914 OTTHUMG00000133095 uc003coi.3 BC012831 NM_015004 CCDS2725 Q15024 "11719186|11812149" MGI:1913696 RGD:1309758 EXOSC7 606488 3.1.13.- +HGNC:17035 EXOSC8 exosome component 8 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "OIP2|RRP43|bA421P11.3|Rrp43p|EAP2|p9|CIP3" "CBP-interacting protein 3|Opa interacting protein 2" Exosome complex 817 2004-03-26 2016-10-05 11340 ENSG00000120699 OTTHUMG00000016742 uc001uwa.5 AF025438 NM_181503 CCDS31958 Q96B26 "9466265|11929972" MGI:1916889 RGD:1306169 EXOSC8 606019 415196 3.1.13.- +HGNC:9137 EXOSC9 exosome component 9 protein-coding gene gene with protein product Approved 4q27 04q27 "PM/Scl-75|Rrp45p|RRP45|p5|p6" polymyositis/scleroderma autoantigen 1 (75kD) PMSCL1 polymyositis/scleroderma autoantigen 1, 75kDa Exosome complex 817 1994-09-19 2004-06-18 2004-06-16 2014-11-19 5393 ENSG00000123737 OTTHUMG00000128783 uc003iea.4 M58460 NM_005033 "CCDS3722|CCDS34057" Q06265 MGI:1355319 RGD:1307888 EXOSC9 606180 3.1.13.- +HGNC:9138 EXOSC10 exosome component 10 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "PM-Scl|PM/Scl-100|Rrp6p|RRP6|p2|p3|p4" polymyositis/scleroderma autoantigen 2 (100kD) PMSCL2 polymyositis/scleroderma autoantigen 2, 100kDa Exosome complex 817 1994-09-19 2004-06-18 2004-06-16 2014-11-19 5394 ENSG00000171824 OTTHUMG00000002123 uc001asb.4 BC073788 NM_001001998 "CCDS126|CCDS30584" Q01780 "1383382|1644924" MGI:1355322 RGD:1593248 EXOSC10 605960 +HGNC:30578 EXPH5 exophilin 5 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 SLAC2-B synaptotagmin-like homologue lacking C2 domains b 2005-10-04 2014-11-19 23086 ENSG00000110723 OTTHUMG00000166536 uc001pkk.3 NM_015065 "CCDS8341|CCDS76473" Q8NEV8 "9734811|11773082" MGI:2443248 RGD:1560308 EXPH5 612878 423086 +HGNC:3512 EXT1 exostosin glycosyltransferase 1 protein-coding gene gene with protein product Approved 8q24.11 08q24.11 ttv "Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N- acetylglucosaminyltransferase|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase" "LGCR|LGS" "Langer-Giedion syndrome chromosome region|exostoses (multiple) 1|exostosin 1" Exostosin glycosyltransferase family 431 1993-05-04 2013-03-01 2016-10-12 2131 ENSG00000182197 OTTHUMG00000059718 uc003yok.3 S79639 NM_000127 CCDS6324 Q16394 MGI:894663 RGD:1587375 "Multiple Osteochondroma Mutation Database|http://medgen.ua.ac.be/LOVDv.2.0/home.php?select_db=EXT1|LRG_493|http://www.lrg-sequence.org/LRG/LRG_493" EXT1 608177 121645 "2.4.1.224|2.4.1.225" +HGNC:3513 EXT2 exostosin glycosyltransferase 2 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 SOTV "Glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N- acetylglucosaminyltransferase|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase" "exostoses (multiple) 2|exostosin 2" Exostosin glycosyltransferase family 431 1994-06-01 2013-03-01 2016-10-12 2132 ENSG00000151348 OTTHUMG00000166498 uc001mxz.4 NM_000401 "CCDS7908|CCDS53618|CCDS53619" Q93063 "8162019|9576285" MGI:108050 RGD:1307707 "Multiple Osteochondroma Mutation Database|http://medgen.ua.ac.be/LOVDv.2.0/home.php?select_db=EXT2|LRG_494|http://www.lrg-sequence.org/LRG/LRG_494" EXT2 608210 121648 "2.4.1.224|2.4.1.225" +HGNC:3514 EXT3 exostoses (multiple) 3 phenotype phenotype only Approved 19p 19p EXT2 1994-09-07 2007-11-16 2133 8081357 600209 +HGNC:3515 EXTL1 exostosin like glycosyltransferase 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "EXTL|MGC70794" "glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N- acetylglucosaminyltransferase|alpha-N-acetylglucosaminyltransferase II|glucuronyl-N-acetylglucosaminylproteoglycan alpha-1,4-N- acetylglucosaminyltransferase|exostosin-L" exostoses (multiple)-like 1 Exostosin glycosyltransferase family 431 1997-06-12 2016-06-01 2016-10-05 2134 ENSG00000158008 OTTHUMG00000007509 uc001blf.4 U67191 NM_004455 CCDS271 Q92935 9037597 MGI:1888742 RGD:1309572 EXTL1 601738 2.4.1.224 +HGNC:3516 EXTL2 exostosin like glycosyltransferase 2 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 alpha-1,4-N-acteylhexosaminyltransferase exostoses (multiple)-like 2 Exostosin glycosyltransferase family 431 1998-03-20 2016-06-01 2016-10-05 2135 ENSG00000162694 OTTHUMG00000011814 uc001dtl.3 U76189 NM_001439 "CCDS775|CCDS72831" Q9UBQ6 "9450183|15831490" MGI:1889574 RGD:1307684 EXTL2 602411 2.4.1.223 +HGNC:3517 EXTL2P1 exostosin like glycosyltransferase 2 pseudogene 1 pseudogene pseudogene Approved 2q31.1 02q31.1 EXTL2P exostoses (multiple)-like 2 pseudogene 1998-03-20 2010-03-12 2016-06-01 2016-06-01 100287682 ENSG00000223976 OTTHUMG00000154110 NG_016787 9450183 PGOHUM00000241025 +HGNC:3518 EXTL3 exostosin like glycosyltransferase 3 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "botv|REGR" "REG receptor|glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase" exostoses (multiple)-like 3 Exostosin glycosyltransferase family 431 1998-03-20 2016-02-17 2016-10-05 2137 ENSG00000012232 OTTHUMG00000102146 uc003xgz.3 U76188 NM_001440 CCDS6070 O43909 "9479495|9450183|11257457" MGI:1860765 RGD:62065 EXTL3 605744 2.4.1.223 +HGNC:27985 EXTL3-AS1 EXTL3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8p21.1 08p21.1 C8orf50 "chromosome 8 open reading frame 50|EXTL3 antisense RNA 1 (non-protein coding)" 2005-08-11 2012-04-13 2012-08-15 2014-01-24 101929402 ENSG00000246339 OTTHUMG00000164029 uc003xgy.4 BC043205 NR_126027 12477932 +HGNC:3519 EYA1 EYA transcriptional coactivator and phosphatase 1 protein-coding gene gene with protein product Approved 8q13.3 08q13.3 BOR "eyes absent (Drosophila) homolog 1|eyes absent homolog 1 (Drosophila)" EYA transcriptional coactivator and phosphatases 1044 1996-12-12 2014-06-19 2015-09-11 2138 ENSG00000104313 OTTHUMG00000149894 uc003xyu.3 AJ000098 "NM_000503|NM_172060" "CCDS34906|CCDS34907|CCDS47873|CCDS75750" Q99502 9020840 MGI:109344 RGD:1584849 EYA1 601653 121651 +HGNC:3520 EYA2 EYA transcriptional coactivator and phosphatase 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 EAB1 "eyes absent (Drosophila) homolog 2|eyes absent homolog 2 (Drosophila)" EYA transcriptional coactivator and phosphatases 1044 1997-06-24 2014-06-19 2016-10-05 2139 ENSG00000064655 OTTHUMG00000033041 uc002xsm.3 NM_005244 "CCDS13403|CCDS54471" O00167 9020840 MGI:109341 RGD:620096 EYA2 601654 +HGNC:3521 EYA3 EYA transcriptional coactivator and phosphatase 3 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 DKFZp686C132 "eyes absent (Drosophila) homolog 3|eyes absent homolog 3 (Drosophila)" EYA transcriptional coactivator and phosphatases 1044 1997-06-24 2014-06-19 2016-10-05 2140 ENSG00000158161 OTTHUMG00000003916 uc001bpi.3 U81602 NM_001990 "CCDS316|CCDS60050|CCDS60051|CCDS60052" Q99504 9020840 MGI:109339 RGD:1309932 EYA3 601655 +HGNC:41332 EYA3-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:3522 EYA4 EYA transcriptional coactivator and phosphatase 4 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "DFNA10|CMD1J" "eyes absent (Drosophila) homolog 4|eyes absent homolog 4 (Drosophila)" EYA transcriptional coactivator and phosphatases 1044 1998-07-15 2014-06-19 2016-10-12 2070 ENSG00000112319 OTTHUMG00000015602 uc011ecs.3 Y17114 NM_004100 "CCDS5165|CCDS5166|CCDS43506|CCDS75521|CCDS75523" O95677 "9887327|11159937" MGI:1337104 RGD:1307099 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|LRG_418|http://www.lrg-sequence.org/LRG/LRG_418" EYA4 603550 121654 +HGNC:3523 EYCL1 eye color 1 (green/blue) phenotype phenotype only Approved 19 19 GEY 2001-06-22 2012-10-02 2141 3568446 +HGNC:21555 EYS eyes shut homolog (Drosophila) protein-coding gene gene with protein product Approved 6q12 06q12 "dJ1018A4.2|bA166P24.2|SPAM|bA307F22.3|dJ303F19.1|bA74E24.1" "C6orf180|EGFL11|RP25|EGFL10|C6orf178|C6orf179" "chromosome 6 open reading frame 180|EGF-like-domain, multiple 11|retinitis pigmentosa 25 (autosomal recessive)|EGF-like-domain, multiple 10|chromosome 6 open reading frame 178|chromosome 6 open reading frame 179" 2003-11-26 2008-10-20 2008-10-20 2014-11-19 346007 ENSG00000188107 OTTHUMG00000014971 uc011dxu.1 XM_294050 "CCDS4967|CCDS47445|CCDS47446|CCDS78156" Q5T1H1 "18836446|18976725" EYS 612424 169936 +HGNC:3526 EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KIAA0388|KMT6B" "enhancer of zeste (Drosophila) homolog 1|enhancer of zeste homolog 1 (Drosophila)" "Lysine methyltransferases|Myb/SANT domain containing" "487|532" 1995-12-21 2014-05-28 2016-10-05 2145 ENSG00000108799 OTTHUMG00000180645 uc002iaz.4 NM_001991 "CCDS32659|CCDS82129|CCDS82130" Q92800 8921387 MGI:1097695 RGD:1305028 EZH1 601674 objectId:2835 +HGNC:3527 EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "EZH1|ENX-1|KMT6|KMT6A" "enhancer of zeste (Drosophila) homolog 2|enhancer of zeste homolog 2 (Drosophila)" "Lysine methyltransferases|Myb/SANT domain containing" "487|532" 1995-12-21 2014-05-28 2016-10-12 2146 ENSG00000106462 OTTHUMG00000158973 uc003wfb.3 NM_004456 "CCDS5891|CCDS5892|CCDS56516|CCDS56517|CCDS56518" Q15910 "8954776|17172412" MGI:107940 RGD:1595860 LRG_531|http://www.lrg-sequence.org/LRG/LRG_531 EZH2 601573 291819 objectId:2654 +HGNC:39918 EZH2P1 enhancer of zeste 2 polycomb repressive complex 2 subunit pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 enhancer of zeste homolog 2 (Drosophila) pseudogene 1 2011-04-12 2015-03-18 2015-03-18 266693 ENSG00000231300 OTTHUMG00000086464 NG_002373 PGOHUM00000239072 +HGNC:12691 EZR ezrin protein-coding gene gene with protein product Approved 6q25.3 06q25.3 cytovillin 2 VIL2 villin 2 (ezrin) "A-kinase anchoring proteins|FERM domain containing" "396|1293" 1989-06-30 2007-11-29 2007-11-29 2015-09-11 7430 ENSG00000092820 OTTHUMG00000015917 uc003qru.5 AF187552 NM_003379 CCDS5258 P15311 MGI:98931 RGD:621161 EZR 123900 448725 +HGNC:40609 EZR-AS1 EZR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q25.3 06q25.3 EZR antisense RNA 1 (non-protein coding) 2012-03-07 2012-08-15 2014-11-19 101409257 ENSG00000233893 OTTHUMG00000015915 uc063soa.1 "AI831881|BE552153" NR_102425 +HGNC:3535 F2 coagulation factor II, thrombin protein-coding gene gene with protein product Approved 11p11.2 11p11.2 prepro-coagulation factor II coagulation factor II (thrombin) "Endogenous ligands|Gla domain containing" "542|1250" 2001-06-22 2016-01-15 2016-10-12 2147 ENSG00000180210 OTTHUMG00000150344 uc001ndf.5 M33031 XR_428840 CCDS31476 P00734 MGI:88380 RGD:61996 LRG_551|http://www.lrg-sequence.org/LRG/LRG_551 F2 176930 121671 S01.217 objectId:2362 3.4.21.5 +HGNC:3536 F2L entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:3537 F2R coagulation factor II thrombin receptor protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "TR|CF2R|PAR1|PAR-1" protease activated receptor 1 coagulation factor II (thrombin) receptor F2R receptors 219 1991-07-16 2016-01-15 2016-10-12 2149 ENSG00000181104 OTTHUMG00000131299 uc003ken.5 M62424 NM_001992 CCDS4032 P25116 8395910 MGI:101802 RGD:2586 LRG_641|http://www.lrg-sequence.org/LRG/LRG_641 F2R 187930 objectId:347 +HGNC:3538 F2RL1 F2R like trypsin receptor 1 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 PAR2 proteinase-activated receptor-2 GPR11 coagulation factor II (thrombin) receptor-like 1 F2R receptors 219 1997-10-27 2016-01-20 2016-10-05 2150 ENSG00000164251 OTTHUMG00000102118 uc003keo.4 BC018130 NM_005242 CCDS4033 P55085 "7937743|7556175" MGI:101910 RGD:620866 F2RL1 600933 objectId:348 +HGNC:3539 F2RL2 coagulation factor II thrombin receptor like 2 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 PAR3 proteinase-activated receptor-3 coagulation factor II (thrombin) receptor-like 2 F2R receptors 219 1997-10-27 2016-01-20 2016-10-05 2151 ENSG00000164220 OTTHUMG00000102119 uc003kem.4 U92971 NM_004101 "CCDS4031|CCDS58959" O00254 "9087410|9722561" MGI:1298208 RGD:620871 F2RL2 601919 objectId:349 +HGNC:3540 F2RL3 F2R like thrombin/trypsin receptor 3 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 PAR4 proteinase-activated receptor-4 coagulation factor II (thrombin) receptor-like 3 F2R receptors 219 1999-01-13 2016-01-20 2016-10-05 9002 ENSG00000127533 OTTHUMG00000182647 uc002nfa.4 AF055917 NM_003950 CCDS12350 Q96RI0 9618465 MGI:1298207 RGD:620872 F2RL3 602779 objectId:350 +HGNC:3541 F3 coagulation factor III, tissue factor protein-coding gene gene with protein product Approved 1p21.3 01p21.3 "CD142|TF" tissue factor coagulation factor III (thromboplastin, tissue factor) CD molecules 471 2001-06-22 2016-01-15 2016-10-05 2152 ENSG00000117525 OTTHUMG00000010716 uc001dqr.4 BC011029 NM_001993 "CCDS750|CCDS53345" P13726 MGI:88381 RGD:2587 F3 134390 CD142 +HGNC:3542 F5 coagulation factor V protein-coding gene gene with protein product Approved 1q24.2 01q24.2 coagulation factor V (proaccelerin, labile factor) 2001-06-22 2016-01-15 2016-10-12 2153 ENSG00000198734 OTTHUMG00000034595 uc001ggg.2 M14335 NM_000130 CCDS1281 P12259 MGI:88382 RGD:1589758 LRG_553|http://www.lrg-sequence.org/LRG/LRG_553 F5 612309 121673 objectId:2606 +HGNC:3544 F7 coagulation factor VII protein-coding gene gene with protein product Approved 13q34 13q34 "eptacog alfa|FVII coagulation protein|factor VII" coagulation factor VII (serum prothrombin conversion accelerator) Gla domain containing 1250 2001-06-22 2016-01-15 2016-10-12 2155 ENSG00000057593 OTTHUMG00000017373 uc001vsv.5 NM_000131 "CCDS9528|CCDS9529|CCDS73602" P08709 "3264725|2511201" MGI:109325 RGD:628678 LRG_554|http://www.lrg-sequence.org/LRG/LRG_554 F7 613878 121675 S01.215 objectId:2363 3.4.21.21 +HGNC:3545 F7R coagulation factor VII regulator other unknown Approved 8p23.2-p23.1 08p23.2-p23.1 F7E 2001-06-22 2013-03-15 2156 "3410461|6714981" +HGNC:3546 F8 coagulation factor VIII protein-coding gene gene with protein product Approved Xq28 Xq28 "FVIII|DXS1253E|HEMA" "Factor VIIIF8B|hemophilia A" F8C coagulation factor VIII, procoagulant component 2001-06-22 2016-01-15 2016-10-12 2157 ENSG00000185010 OTTHUMG00000022688 uc004fmt.4 M90707 NM_000132 "CCDS35457|CCDS44026" P00451 "6438528|3935400" MGI:88383 RGD:727845 "HAMSTeRS: The Haemophilia A Mutation, Structure, Test & Resource Site|http://hadb.org.uk/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=F8|LRG_555|http://www.lrg-sequence.org/LRG/LRG_555" F8 300841 121677 objectId:2607 +HGNC:3547 F8A1 coagulation factor VIII-associated 1 protein-coding gene gene with protein product Approved Xq28 Xq28 DXS522E F8A coagulation factor VIII-associated (intronic transcript) 1 2000-08-24 2004-11-02 2011-04-13 2015-08-27 8263 ENSG00000277203 OTTHUMG00000013500 uc004fmv.4 M34677 NM_012151 CCDS35459 P23610 2110545 MGI:95474 RGD:1566014 F8A1 305423 +HGNC:31849 F8A2 coagulation factor VIII-associated 2 protein-coding gene gene with protein product Approved Xq28 Xq28 coagulation factor VIII-associated (intronic transcript) 2 2004-11-01 2011-04-13 2015-08-27 474383 ENSG00000274791 OTTHUMG00000034293 uc004fni.4 NM_001007523 CCDS35462 P23610 MGI:95474 +HGNC:31850 F8A3 coagulation factor VIII-associated 3 protein-coding gene gene with protein product Approved Xq28 Xq28 coagulation factor VIII-associated (intronic transcript) 3 2004-11-01 2011-04-13 2015-08-27 474384 ENSG00000277150 OTTHUMG00000034289 uc004fnj.4 NM_001007524 CCDS35463 P23610 MGI:95474 +HGNC:3551 F9 coagulation factor IX protein-coding gene gene with protein product Approved Xq27.1 Xq27.1 FIX "Factor IX|plasma thromboplastic component|Christmas disease|hemophilia B" Gla domain containing 1250 2001-06-22 2008-08-01 2016-10-12 2158 ENSG00000101981 OTTHUMG00000022536 uc004fas.2 M11309 XM_005262397 "CCDS14666|CCDS83495" P00740 MGI:88384 RGD:2589 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=F9|LRG_556|http://www.lrg-sequence.org/LRG/LRG_556" F9 300746 121683 S01.214 objectId:2364 3.4.21.22 +HGNC:3528 F10 coagulation factor X protein-coding gene gene with protein product Approved 13q34 13q34 Gla domain containing 1250 2001-06-22 2016-10-12 2159 ENSG00000126218 OTTHUMG00000017374 uc001vsx.4 NM_000504 "CCDS9530|CCDS81783" P00742 MGI:103107 RGD:61850 LRG_548|http://www.lrg-sequence.org/LRG/LRG_548 F10 613872 121658 S01.216 objectId:2359 3.4.21.6 +HGNC:40225 F10-AS1 F10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 F10 antisense RNA 1 (non-protein coding) 2011-05-09 2012-08-15 2014-11-19 104413892 ENSG00000231882 OTTHUMG00000133691 uc058yln.1 NR_126424 +HGNC:3529 F11 coagulation factor XI protein-coding gene gene with protein product Approved 4q35.2 04q35.2 FXI plasma thromboplastin antecedent 1988-05-11 2008-08-01 2016-10-12 2160 ENSG00000088926 OTTHUMG00000150311 uc003iza.2 M13142 XM_005262821 CCDS3847 P03951 MGI:99481 RGD:1309364 LRG_583|http://www.lrg-sequence.org/LRG/LRG_583 F11 264900 121660 S01.213 objectId:2360 3.4.21.27 +HGNC:27725 F11-AS1 F11 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q35.2 04q35.2 2013-09-17 2013-09-17 285441 ENSG00000251165 OTTHUMG00000160319 BC038717 NR_033900 12477932 +HGNC:14685 F11R F11 receptor protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "PAM-1|JCAM|JAM-1|JAM-A|JAMA|CD321" JAM1 junctional adhesion molecule 1 "CD molecules|V-set domain containing|Immunoglobulin like domain containing" "471|590|594" 2001-04-10 2003-02-14 2003-02-07 2016-10-05 50848 ENSG00000158769 OTTHUMG00000028602 uc009wtt.4 AF111713 NM_016946 CCDS1213 Q9Y624 "10395639|7646439" MGI:1321398 RGD:621842 F11R 605721 CD321 +HGNC:3530 F12 coagulation factor XII protein-coding gene gene with protein product Approved 5q35.3 05q35.3 coagulation factor XII (Hageman factor) 2001-06-22 2016-01-15 2016-10-12 2161 ENSG00000131187 OTTHUMG00000163403 uc003mgo.5 M31315 NM_000505 CCDS34302 P00748 MGI:1891012 RGD:1359175 LRG_145|http://www.lrg-sequence.org/LRG/LRG_145 F12 610619 121663 S01.211 objectId:2361 3.4.21.38 +HGNC:3531 F13A1 coagulation factor XIII A chain protein-coding gene gene with protein product Approved 6p25.1 06p25.1 F13A coagulation factor XIII, A1 polypeptide Transglutaminases 773 2001-06-22 2016-01-15 2016-10-12 2162 ENSG00000124491 OTTHUMG00000014186 uc003mwv.4 M14539 NM_000129 CCDS4496 P00488 MGI:1921395 RGD:621495 LRG_549|http://www.lrg-sequence.org/LRG/LRG_549 F13A1 134570 121665 +HGNC:3532 F13A2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-05-26 +HGNC:3533 F13A3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-05-26 +HGNC:3534 F13B coagulation factor XIII B chain protein-coding gene gene with protein product Approved 1q31.3 01q31.3 FXIIIB coagulation factor XIII, B polypeptide Sushi domain containing 1179 2001-06-22 2016-01-15 2016-10-12 2165 ENSG00000143278 OTTHUMG00000036519 uc001gtt.1 M14057 NM_001994 CCDS1388 P05160 "2339067|2271707" MGI:88379 RGD:1311668 LRG_550|http://www.lrg-sequence.org/LRG/LRG_550 F13B 134580 121668 +HGNC:3552 FA1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:21197 FA2H fatty acid 2-hydroxylase protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "FAAH|FLJ25287" fatty acid hydroxylase "FAXDC1|SPG35" "fatty acid hydroxylase domain containing 1|spastic paraplegia 35 (autosomal recessive)" Fatty acid hydroxylase domain containing 552 2003-05-27 2003-10-31 2003-10-29 2016-10-05 79152 ENSG00000103089 OTTHUMG00000137603 uc002fde.3 BC002679 NM_024306 CCDS10911 Q7L5A8 20104589 MGI:2443327 RGD:1310347 FA2H 611026 178127 +HGNC:3553 FAAH fatty acid amide hydrolase protein-coding gene gene with protein product Approved 1p33 01p33 FAAH-1 1998-01-20 2016-10-05 2166 ENSG00000117480 OTTHUMG00000007811 uc001cpu.3 U82535 NM_001441 CCDS535 O00519 9122178 MGI:109609 RGD:6491947 FAAH 602935 objectId:1400 +HGNC:26440 FAAH2 fatty acid amide hydrolase 2 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "RP11-479E16.1|FLJ31204|FAAH-2" AMDD amidase domain containing 2006-07-11 2006-11-24 2006-11-24 2016-10-05 158584 ENSG00000165591 OTTHUMG00000021684 uc004dvc.4 AK055766 NM_174912 CCDS14375 Q6GMR7 17015445 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAAH2 FAAH2 300654 objectId:1401 +HGNC:50679 FAAHP1 fatty acid amide hydrolase pseudogene 1 pseudogene pseudogene Approved 1p33 01p33 2014-06-05 2014-06-05 729041 ENSG00000232022 OTTHUMG00000007812 NR_045483 PGOHUM00000244703 +HGNC:26428 FAAP20 Fanconi anemia core complex associated protein 20 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ31031 C1orf86 chromosome 1 open reading frame 86 2005-05-27 2015-05-29 2015-05-29 2015-05-29 199990 ENSG00000162585 OTTHUMG00000001404 AK126870 NM_182533 "CCDS38|CCDS57965|CCDS72686|CCDS72687" Q6NZ36 "14702039|22343915" MGI:1914763 RGD:1308923 615183 +HGNC:28467 FAAP24 Fanconi anemia core complex associated protein 24 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "FLJ46828|MGC32020" Fanconi anemia-associated protein, 24kDa C19orf40 chromosome 19 open reading frame 40 2006-03-31 2015-05-29 2015-05-29 2015-05-29 91442 ENSG00000131944 AK128668 NM_152266 "CCDS12426|CCDS74327" Q9BTP7 17289582 MGI:2142208 RGD:1564719 610884 +HGNC:26171 FAAP100 Fanconi anemia core complex associated protein 100 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 FLJ22175 Fanconi anemia-associated protein, 100kDa C17orf70 chromosome 17 open reading frame 70 2005-12-19 2015-05-29 2015-05-29 2016-04-25 80233 ENSG00000185504 OTTHUMG00000167764 BC008883 NM_025161 CCDS32765 Q0VG06 17396147 MGI:1919135 RGD:1306926 611301 +HGNC:3555 FABP1 fatty acid binding protein 1 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 L-FABP fatty acid binding protein 1, liver Fatty acid binding protein family 550 2001-06-22 2016-01-20 2016-10-05 2168 ENSG00000163586 OTTHUMG00000130312 uc002sst.3 M10617 NM_001443 CCDS2001 P07148 "3012800|17698986" MGI:95479 RGD:2590 FABP1 134650 objectId:2531 +HGNC:3556 FABP2 fatty acid binding protein 2 protein-coding gene gene with protein product Approved 4q26 04q26 I-FABP fatty acid binding protein 2, intestinal Fatty acid binding protein family 550 1986-01-01 2016-01-20 2016-10-05 2169 ENSG00000145384 OTTHUMG00000132972 uc003icw.4 J03465 NM_000134 CCDS3712 P12104 MGI:95478 RGD:2591 FABP2 134640 objectId:2532 +HGNC:3557 FABP3 fatty acid binding protein 3 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "H-FABP|O-FABP" mammary-derived growth inhibitor "MDGI|FABP11" "fatty acid binding protein 11|fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor)|fatty acid binding protein 3, muscle and heart" Fatty acid binding protein family 550 1991-08-06 2016-01-20 2016-10-05 2170 ENSG00000121769 OTTHUMG00000003797 uc001bss.2 U57623 NM_004102 CCDS342 P05413 8661024 MGI:95476 RGD:69048 FABP3 134651 objectId:2533 +HGNC:3558 FABP3P2 fatty acid binding protein 3 pseudogene 2 pseudogene pseudogene Approved 13q14.11 13q14.11 "FABP3-ps|FABP3P" 2000-07-31 2016-01-18 2016-10-05 56677 ENSG00000233259 OTTHUMG00000016806 U72237 NG_001286 9256083 PGOHUM00000248387 +HGNC:3559 FABP4 fatty acid binding protein 4 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "A-FABP|aP2" adipocyte fatty acid binding protein Fatty acid binding protein family 550 1991-08-06 2016-01-18 2016-01-18 2167 ENSG00000170323 OTTHUMG00000164602 uc003ycd.3 J02874 NM_001442 CCDS6230 P15090 2481498 MGI:88038 RGD:69309 FABP4 600434 objectId:2534 +HGNC:3560 FABP5 fatty acid binding protein 5 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "E-FABP|PA-FABP|KFABP" fatty acid binding protein 5 (psoriasis-associated) Fatty acid binding protein family 550 1995-03-28 2016-01-18 2016-01-18 2171 ENSG00000164687 OTTHUMG00000134313 uc003yca.3 M94856 NM_001444 CCDS6228 Q01469 1512466 MGI:101790 RGD:70997 FABP5 605168 objectId:2535 +HGNC:31059 FABP5P1 fatty acid binding protein 5 pseudogene 1 pseudogene pseudogene Approved 13q22.1 13q22.1 FABP5 FABP5L1 "fatty acid binding protein 5-like 1|fatty acid binding protein 5-like 1 (pseudogene)" 2004-04-16 2010-10-12 2010-10-12 2014-11-18 387934 ENSG00000236972 OTTHUMG00000017073 NG_006997 +HGNC:31060 FABP5P2 fatty acid binding protein 5 pseudogene 2 pseudogene pseudogene Approved 13q14.3 13q14.3 FABP5L2 fatty acid binding protein 5-like 2 2004-04-16 2010-10-12 2010-10-12 2014-11-19 729163 ENSG00000236044 OTTHUMG00000016954 NG_009322 +HGNC:22573 FABP5P3 fatty acid binding protein 5 pseudogene 3 pseudogene pseudogene Approved 7q36.1 07q36.1 TCAG_1781704 FABP5L3 "fatty acid binding protein 5-like 3|fatty acid binding protein 5-like 3 (pseudogene)" 2004-04-16 2010-10-12 2010-10-12 2010-10-12 220832 ENSG00000241735 OTTHUMG00000157257 NR_002935 A8MUU1 +HGNC:31061 FABP5P4 fatty acid binding protein 5 pseudogene 4 pseudogene pseudogene Approved 13q31.3 13q31.3 FABP5L4 fatty acid binding protein 5-like 4 2004-04-16 2010-10-12 2010-10-12 2014-11-19 404766 ENSG00000229287 OTTHUMG00000017196 NG_027928 PGOHUM00000248462 +HGNC:31068 FABP5P5 fatty acid binding protein 5 pseudogene 5 pseudogene pseudogene Approved 5q15 05q15 FABP5L5 fatty acid binding protein 5-like 5 2004-04-16 2010-10-12 2010-10-12 2014-11-19 100288964 ENSG00000213716 OTTHUMG00000162739 NG_027896 PGOHUM00000235319 +HGNC:31069 FABP5P6 fatty acid binding protein 5 pseudogene 6 pseudogene pseudogene Approved 5q23.1 05q23.1 FABP5L6 fatty acid binding protein 5-like 6 2004-04-16 2010-10-12 2010-10-12 2014-11-18 100130687 ENSG00000249919 OTTHUMG00000162947 NG_008825 PGOHUM00000235371 +HGNC:31070 FABP5P7 fatty acid binding protein 5 pseudogene 7 pseudogene pseudogene Approved 11q12.1 11q12.1 FABP5L7 fatty acid binding protein 5-like 7 2004-04-16 2010-10-12 2010-10-12 2014-11-19 728641 ENSG00000234964 NG_009321 +HGNC:31063 FABP5P8 fatty acid binding protein 5 pseudogene 8 pseudogene pseudogene Approved 15q25.2 15q25.2 FABP5L8 fatty acid binding protein 5-like 8 2008-06-20 2010-10-12 2010-10-12 2014-11-18 728729 NG_009324 PGOHUM00000247229 +HGNC:31064 FABP5P9 fatty acid binding protein 5 pseudogene 9 pseudogene pseudogene Approved 15q25.3 15q25.3 FABP5L9 fatty acid binding protein 5-like 9 2008-06-20 2010-10-12 2010-10-12 2014-11-19 642956 NG_009323 PGOHUM00000247257 +HGNC:31066 FABP5P10 fatty acid binding protein 5 pseudogene 10 pseudogene pseudogene Approved 2q23.3 02q23.3 FABP5L10 fatty acid binding protein 5-like 10 2008-06-20 2010-10-12 2010-10-12 2010-10-12 344332 ENSG00000213201 OTTHUMG00000153780 NG_008710 PGOHUM00000240982 +HGNC:19328 FABP5P11 fatty acid binding protein 5 pseudogene 11 pseudogene pseudogene Approved 22q11.1 22q11.1 "FABP5P1|FABP5L11" "fatty acid binding protein 5, pseudogene 1|fatty acid binding protein 5-like 11 (pseudogene)" 2002-10-03 2010-10-12 2010-10-12 2016-10-05 266699 ENSG00000240122 OTTHUMG00000150095 NG_002376 PGOHUM00000246198 +HGNC:31067 FABP5P12 fatty acid binding protein 5 pseudogene 12 pseudogene pseudogene Approved 4q32.1 04q32.1 FABP5L12 fatty acid binding protein 5-like 12 2008-06-20 2010-10-12 2010-10-12 2014-11-18 100270673 ENSG00000249367 OTTHUMG00000161989 NG_009509 PGOHUM00000246120 +HGNC:38717 FABP5P13 fatty acid binding protein 5 pseudogene 13 pseudogene pseudogene Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 FABP5L13 fatty acid binding protein 5-like 13 (pseudogene) Pseudoautosomal region 1 715 2010-07-28 2010-10-12 2010-10-12 2016-10-05 106480712 ENSG00000234958 OTTHUMG00000021050 NG_043499 PGOHUM00000304490 +HGNC:31065 FABP5P14 fatty acid binding protein 5 pseudogene 14 pseudogene pseudogene Approved 2q35 02q35 FABP5L14 fatty acid binding protein 5-like 14 (pseudogene) 2010-09-30 2010-10-12 2010-10-12 2014-11-18 100873957 ENSG00000234588 OTTHUMG00000155314 NG_032190 PGOHUM00000240521 +HGNC:31071 FABP5P15 fatty acid binding protein 5 pseudogene 15 pseudogene pseudogene Approved Xq21.1 Xq21.1 FABP5L15 fatty acid binding protein 5-like 15 (pseudogene) 2010-09-30 2010-10-12 2010-10-12 2014-11-18 100873958 ENSG00000237106 OTTHUMG00000021881 NG_008838 PGOHUM00000241865 +HGNC:3561 FABP6 fatty acid binding protein 6 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "I-15P|ILLBP|I-BAP|ILBP3|I-BABP|ILBP|I-BALB" "illeal lipid-binding protein|ileal bile acid binding protein|gastrotropin" fatty acid binding protein 6, ileal Fatty acid binding protein family 550 1997-09-12 2016-01-20 2016-10-05 2172 ENSG00000170231 OTTHUMG00000130329 uc003lya.2 U19869 NM_001040442 "CCDS4349|CCDS43393" P51161 "7894165|7619861" MGI:96565 RGD:2592 FABP6 600422 objectId:2536 +HGNC:3562 FABP7 fatty acid binding protein 7 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "B-FABP|BLBP" brain lipid binding protein fatty acid binding protein 7, brain Fatty acid binding protein family 550 1998-01-20 2016-01-20 2016-10-05 2173 ENSG00000164434 OTTHUMG00000015489 uc003pzf.4 D88648 NM_001446 "CCDS5127|CCDS83121" O15540 9375786 MGI:101916 RGD:69312 FABP7 602965 objectId:2537 +HGNC:41951 FABP7P1 fatty acid binding protein 7 pseudogene 1 pseudogene pseudogene Approved 1q44 01q44 fatty acid binding protein 7, brain pseudogene 1 2011-05-20 2016-01-20 2016-01-20 100506953 ENSG00000226766 OTTHUMG00000040017 NG_029025 PGOHUM00000244522 +HGNC:41952 FABP7P2 fatty acid binding protein 7 pseudogene 2 pseudogene pseudogene Approved 2q11.1 02q11.1 fatty acid binding protein 7, brain pseudogene 2 2011-05-20 2016-01-20 2016-01-20 100874317 ENSG00000235129 OTTHUMG00000155162 NG_032382 PGOHUM00000240200 +HGNC:3563 FABP9 fatty acid binding protein 9 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "PERF|T-FABP|PERF15" testis fatty acid binding protein Fatty acid binding protein family 550 1998-01-20 2016-01-18 2016-01-18 646480 ENSG00000205186 OTTHUMG00000164601 uc011lfo.3 NM_001080526 Q0Z7S8 7958448 MGI:1194881 RGD:620285 FABP9 objectId:2538 +HGNC:34524 FABP12 fatty acid binding protein 12 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 Fatty acid binding protein family 550 2008-11-10 2013-03-01 646486 ENSG00000197416 OTTHUMG00000164679 uc011lfp.3 NM_001105281 CCDS47882 A6NFH5 18786628 MGI:1922747 RGD:1565000 FABP12 objectId:2584 +HGNC:45176 FABP12P1 fatty acid binding protein 12 pseudogene 1 pseudogene pseudogene Approved 6q25.1 06q25.1 2013-03-01 2013-03-01 106479057 ENSG00000216265 OTTHUMG00000015780 NG_044554 PGOHUM00000243414 +HGNC:3568 FACL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3573 FADD Fas associated via death domain protein-coding gene gene with protein product Approved 11q13.3 11q13.3 "MORT1|GIG3" "Fas-associating protein with death domain|Fas-associating death domain-containing protein|mediator of receptor-induced toxicity|growth-inhibiting gene 3 protein" Fas (TNFRSF6)-associated via death domain "Death effector domain containing|Ripoptosome|Death inducing signaling complex " "1019|1340|1342" 1999-05-07 2015-11-19 2016-10-12 8772 ENSG00000168040 OTTHUMG00000167264 uc001opm.3 U24231 NM_003824 CCDS8196 Q13158 "7536190|7538907" MGI:109324 RGD:628700 LRG_228|http://www.lrg-sequence.org/LRG/LRG_228 FADD 602457 311122 +HGNC:3574 FADS1 fatty acid desaturase 1 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "D5D|FADSD5|TU12|FADS6" delta-5 desaturase LLCDL1 Fatty acid desaturases 553 1998-07-30 2016-10-05 3992 ENSG00000149485 OTTHUMG00000157155 uc010rlm.3 NM_013402 CCDS8011 O60427 MGI:1923517 RGD:621678 FADS1 606148 1.14.19.3 +HGNC:3575 FADS2 fatty acid desaturase 2 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "FADSD6|D6D|TU13|DES6|SLL0262" delta-6-desaturase LLCDL2 Fatty acid desaturases 553 1998-07-30 2014-11-18 9415 ENSG00000134824 OTTHUMG00000163794 uc001nsl.3 AF084559 NM_004265 "CCDS8012|CCDS60807|CCDS60808" O95864 MGI:1930079 RGD:68339 FADS2 606149 1.14.19.3 +HGNC:43618 FADS2P1 fatty acid desaturase 2 pseudogene 1 pseudogene pseudogene Approved 11q12.1 11q12.1 2011-12-01 2015-09-21 643181 ENSG00000274150 OTTHUMG00000187766 NG_032737 A8MWK0 RGD:1311224 PGOHUM00000290970 +HGNC:3576 FADS3 fatty acid desaturase 3 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 CYB5RP delta-9-desaturase LLCDL3 Fatty acid desaturases 553 1998-07-30 2016-10-05 3995 ENSG00000221968 OTTHUMG00000167500 uc001nsm.5 XM_017017723 CCDS8013 Q9Y5Q0 MGI:1928740 RGD:628876 FADS3 606150 1.14.19.3 +HGNC:30459 FADS6 fatty acid desaturase 6 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 fatty acid desaturase domain family, member 6 Fatty acid desaturases 553 2004-12-14 2013-01-25 2016-04-25 283985 ENSG00000172782 OTTHUMG00000179188 uc060jrm.1 AK094411 XM_005257224 CCDS54163 Q8N9I5 MGI:3039592 RGD:1311950 FADS6 +HGNC:3578 FAF1 Fas associated factor 1 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "CGI-03|hFAF1|HFAF1s|UBXD12|UBXN3A" "TNFRSF6-associated factor 1|UBX domain protein 3A" Fas (TNFRSF6) associated factor 1 UBX domain containing 364 1999-12-10 2016-01-21 2016-01-21 11124 ENSG00000185104 OTTHUMG00000007930 uc001cse.2 AF132938 NM_007051 CCDS554 Q9UNN5 10462485 MGI:109419 RGD:70987 FAF1 604460 +HGNC:24666 FAF2 Fas associated factor family member 2 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "ETEA|KIAA0887|UBXN3B" "expressed in T cells and eosinophils in atopic dermatitis|UBX domain protein 3B" UBXD8 UBX domain containing 8 UBX domain containing 364 2006-01-06 2008-07-25 2008-07-25 2014-11-19 23197 ENSG00000113194 OTTHUMG00000163228 uc003mej.4 BC015791 NM_014613 CCDS34296 Q96CS3 "10048485|12372427" MGI:1923827 RGD:1306577 FAF2 616935 +HGNC:45172 FAF2P1 Fas associated factor family member 2 pseudogene 1 pseudogene pseudogene Approved 10q23.32 10q23.32 2013-03-01 2013-03-01 100128043 ENSG00000228759 OTTHUMG00000018749 NG_022153 PGOHUM00000238582 +HGNC:3579 FAH fumarylacetoacetate hydrolase protein-coding gene gene with protein product Approved 15q25.1 15q25.1 fumarylacetoacetase 1989-06-07 2016-06-10 2016-06-10 2184 ENSG00000103876 OTTHUMG00000144187 uc021srz.2 M55150 NM_000137 CCDS10314 P16930 "1998338|2336361" MGI:95482 RGD:61932 FAH 613871 121686 3.7.1.2 +HGNC:14169 FAHD1 fumarylacetoacetate hydrolase domain containing 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 DKFZP566J2046 acylpyruvate hydrolase C16orf36 chromosome 16 open reading frame 36 2000-12-21 2004-08-26 2004-08-19 2014-11-19 81889 ENSG00000180185 OTTHUMG00000128663 uc002cnc.2 BC063017 NM_001018104 "CCDS10448|CCDS32367|CCDS45380" Q6P587 21878618 MGI:1915886 RGD:1304560 FAHD1 616320 3.7.1.5 +HGNC:24252 FAHD2A fumarylacetoacetate hydrolase domain containing 2A protein-coding gene gene with protein product Approved 2q11.1 02q11.1 CGI-105 2004-08-19 2016-10-05 51011 ENSG00000115042 OTTHUMG00000130397 uc002sut.2 AF151863 NM_016044 CCDS2014 Q96GK7 MGI:1915376 FAHD2A +HGNC:25318 FAHD2B fumarylacetoacetate hydrolase domain containing 2B protein-coding gene gene with protein product Approved 2q11.2 02q11.2 DKFZp434N062 2006-11-13 2015-08-27 151313 ENSG00000144199 OTTHUMG00000130533 uc002sxm.4 NM_199336 CCDS2030 Q6P2I3 MGI:1915376 RGD:1563674 FAHD2B +HGNC:44135 FAHD2CP fumarylacetoacetate hydrolase domain containing 2C, pseudogene pseudogene pseudogene Approved 2q11.2 02q11.2 2012-06-23 2016-10-05 729234 ENSG00000231584 OTTHUMG00000155210 NR_003698 PGOHUM00000250467 +HGNC:32441 FAHD2P1 fumarylacetoacetate hydrolase domain containing 2 pseudogene 1 pseudogene pseudogene Approved 12q15 12q15 FAHD2P fumarylacetoacetate hydrolase domain containing 2 pseudogene 2006-01-05 2011-10-07 2011-10-07 2011-10-07 729610 ENSG00000257302 OTTHUMG00000169503 AC083809 NG_006649 PGOHUM00000239850 +HGNC:18703 FAIM Fas apoptotic inhibitory molecule protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "FLJ10582|FAIM1" 2002-05-29 2016-10-05 55179 ENSG00000158234 OTTHUMG00000159885 uc003esr.4 AK001444 NM_001033032 "CCDS3103|CCDS33864|CCDS33865" Q9NVQ4 10075978 MGI:1344387 RGD:620572 FAIM +HGNC:17067 FAIM2 Fas apoptotic inhibitory molecule 2 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "KIAA0950|LFG|NMP35|LIFEGUARD|TMBIM2|LFG2" transmembrane BAX inhibitor motif containing 2 Transmembrane BAX inhibitor motif containing 1215 2002-10-08 2016-10-05 23017 ENSG00000135472 OTTHUMG00000169808 uc001rvj.3 AB023167 NM_012306 CCDS8791 Q9BWQ8 "10231032|10535980" MGI:1919643 RGD:628744 FAIM2 604306 +HGNC:43713 FALEC focally amplified long non-coding RNA in epithelial cancer non-coding RNA RNA, long non-coding Approved 1q21.2 01q21.2 "ncRNA-a1|FAL1" focally amplified lncRNA on chromosome 1 LINC00568 long intergenic non-protein coding RNA 568 Long non-coding RNAs 788 2012-02-02 2014-09-17 2014-09-17 2016-10-05 100874054 ENSG00000228126 OTTHUMG00000035849 AL713297 NR_051960 "20887892|25203321" 616092 LINC00568 +HGNC:13749 FAM3A family with sequence similarity 3 member A protein-coding gene gene with protein product Approved Xq28 Xq28 "DXS560S|2-19|XAP-7" family with sequence similarity 3, member A 2002-06-18 2015-11-18 2016-09-30 60343 ENSG00000071889 OTTHUMG00000013418 uc004flw.4 X74610 XM_006724832 "CCDS35453|CCDS55542|CCDS55543|CCDS76060" P98173 "8733135|8281148" MGI:1913544 RGD:1562076 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM3A FAM3A 300492 +HGNC:1253 FAM3B family with sequence similarity 3 member B protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "D21M16SJHU19e|PRED44|2-21|ORF9|C21orf76|PANDER" pancreatic-derived factor C21orf11 "chromosome 21 open reading frame 11|family with sequence similarity 3, member B" 2000-05-23 2002-06-20 2015-11-18 2016-09-30 54097 ENSG00000183844 OTTHUMG00000086752 uc002yzb.2 AF494379 NM_058186 "CCDS13671|CCDS42930" P58499 MGI:1270150 RGD:1311662 FAM3B 608617 +HGNC:18664 FAM3C family with sequence similarity 3 member C protein-coding gene gene with protein product Approved 7q31.31 07q31.31 "GS3876|ILEI" "predicted osteoblast protein|interleukin-like EMT inducer|interleukin-like epithelial-mesenchymal transition inducer" family with sequence similarity 3, member C 2002-06-18 2015-11-18 2016-10-05 10447 ENSG00000196937 OTTHUMG00000156979 uc003vjx.4 D87120 NM_001040020 CCDS5782 Q92520 12160727 MGI:107892 RGD:735193 FAM3C 608618 +HGNC:34501 FAM3C2 family with sequence similarity 3 member C2 (pseudogene) pseudogene pseudogene Approved Xp22.11 Xp22.11 family with sequence similarity 3, member C2 (pseudogene) 2008-08-05 2015-11-18 2016-09-30 286460 ENSG00000174028 OTTHUMG00000021247 NG_002950 +HGNC:18665 FAM3D family with sequence similarity 3 member D protein-coding gene gene with protein product Approved 3p14.2 03p14.2 "EF7|OIT1" family with sequence similarity 3, member D 2002-06-18 2015-11-18 2016-10-05 131177 ENSG00000198643 OTTHUMG00000159148 uc003dkq.4 AF494381 NM_138805 CCDS2893 Q96BQ1 "12160727|26966188" MGI:1201784 RGD:1305512 FAM3D 608619 +HGNC:41276 FAM3D-AS1 FAM3D antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.2 03p14.2 lnc-KCTD6-3 2015-04-30 2015-04-30 105377108 ENSG00000244383 OTTHUMG00000159160 BG215913 NR_134853 25904139 +HGNC:15778 FAM7A4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-07-18 +HGNC:15779 FAM7A5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-07-18 +HGNC:16372 FAM8A1 family with sequence similarity 8 member A1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 AHCP family with sequence similarity 8, member A1 2001-08-28 2015-11-18 2016-10-05 51439 ENSG00000137414 OTTHUMG00000014309 uc003ncc.4 AF097027 NM_016255 CCDS4540 Q9UBU6 11707071 MGI:2145496 RGD:1307845 FAM8A1 +HGNC:16373 FAM8A2P family with sequence similarity 8 member A2, pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 family with sequence similarity 8, member A2 pseudogene 2001-08-28 2015-11-18 2016-09-30 728097 ENSG00000254722 OTTHUMG00000166856 AF315800 NG_009310 11707071 PGOHUM00000290503 +HGNC:16374 FAM8A3P family with sequence similarity 8 member A3, pseudogene pseudogene pseudogene Approved 2q23.2 02q23.2 family with sequence similarity 8, member A3 pseudogene 2001-08-28 2015-11-18 2016-09-30 100129594 ENSG00000224337 OTTHUMG00000153744 AF315797 NG_009311 11707071 PGOHUM00000240979 +HGNC:16375 FAM8A4P family with sequence similarity 8 member A4, pseudogene pseudogene pseudogene Approved Yq11.21 Yq11.21 FAM8A8P "family with sequence similarity 8, member A8 pseudogene|family with sequence similarity 8, member A4 pseudogene" 2001-08-28 2015-11-18 2016-09-30 386726 ENSG00000232730 OTTHUMG00000036378 AF315801 NG_003135 "11707071|12815422" PGOHUM00000233953 +HGNC:16376 FAM8A5P family with sequence similarity 8 member A5, pseudogene pseudogene pseudogene Approved 6p21 alternate reference locus 06p21 alternate reference locus family with sequence similarity 8, member A5 pseudogene 2001-08-28 2015-11-18 2016-09-30 114181 ENSG00000238101 OTTHUMG00000139003 AF315798 NG_001298 11707071 +HGNC:16377 FAM8A6P family with sequence similarity 8 member A6, pseudogene pseudogene pseudogene Approved 6q23.2 06q23.2 family with sequence similarity 8, member A6 pseudogene 2001-08-28 2015-11-18 2016-10-05 114182 ENSG00000218772 OTTHUMG00000015615 AF315799 NG_001299 11707071 PGOHUM00000243383 +HGNC:23868 FAM8A7P family with sequence similarity 8 member A7, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 family with sequence similarity 8, member A7 pseudogene 2004-01-07 2015-11-18 2016-09-30 386725 NG_003134 12815422 +HGNC:23870 FAM8A9P family with sequence similarity 8 member A9, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 family with sequence similarity 8, member A9 pseudogene 2004-01-07 2015-11-18 2016-10-05 386727 NG_003136 12815422 +HGNC:23871 FAM8A10P family with sequence similarity 8 member A10, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 family with sequence similarity 8, member A10 pseudogene 2010-02-11 2015-11-18 2016-09-30 386728 NG_003137 12815422 +HGNC:18403 FAM9A family with sequence similarity 9 member A protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 TEX39A testis expressed 39A family with sequence similarity 9, member A 2002-03-25 2015-11-18 2016-10-05 171482 ENSG00000183304 OTTHUMG00000021110 uc004csg.4 NM_174951 CCDS14131 Q8IZU1 RGD:2322060 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM9A FAM9A 300477 +HGNC:18404 FAM9B family with sequence similarity 9 member B protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 TEX39B testis expressed 39B family with sequence similarity 9, member B 2002-03-25 2015-11-18 2016-09-30 171483 ENSG00000177138 OTTHUMG00000021114 uc064xxo.1 NM_205849 CCDS14132 Q8IZU0 "12213195|21085121|21998597|22936694" FAM9B 300478 +HGNC:18405 FAM9C family with sequence similarity 9 member C protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 TEX39C testis expressed 39C family with sequence similarity 9, member C 2002-03-25 2015-11-18 2016-10-05 171484 ENSG00000187268 OTTHUMG00000021143 uc004cvh.3 NM_174901 CCDS35203 Q8IZT9 RGD:6487554 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM9C FAM9C 300479 +HGNC:19367 FAM13A family with sequence similarity 13 member A protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "KIAA0914|ARHGAP48" FAM13A1 "family with sequence similarity 13, member A1|family with sequence similarity 13, member A" Rho GTPase activating proteins 721 2002-11-15 2009-01-20 2015-11-18 2016-09-30 10144 ENSG00000138640 OTTHUMG00000161006 uc003hse.3 AB020721 XM_017007624 "CCDS34029|CCDS43251|CCDS58911|CCDS58912|CCDS58913" O94988 MGI:1889842 RGD:1309807 FAM13A 613299 353231 +HGNC:19370 FAM13A-AS1 FAM13A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q22.1 04q22.1 NCRNA00039 non-protein coding RNA 39 "FAM13A1OS|FAM13AOS" "FAM13A opposite strand (non-protein coding)|FAM13A antisense RNA 1 (non-protein coding)" 2002-11-15 2011-08-19 2012-08-15 2012-10-12 285512 ENSG00000248019 OTTHUMG00000161035 uc003hry.1 AK126217 NR_002806 15234000 613300 +HGNC:1335 FAM13B family with sequence similarity 13 member B protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "N61|KHCHP|ARHGAP49" "C5orf5|FAM13B1" "chromosome 5 open reading frame 5|family with sequence similarity 13, member B1|family with sequence similarity 13, member B" Rho GTPase activating proteins 721 2000-07-21 2009-01-20 2015-11-18 2016-10-05 51306 ENSG00000031003 OTTHUMG00000129202 uc003lbz.3 AF251038 XM_017009549 "CCDS4195|CCDS47269|CCDS47270" Q9NYF5 "11087669|11161817" MGI:2447834 RGD:1310484 FAM13B 609371 +HGNC:19371 FAM13C family with sequence similarity 13 member C protein-coding gene gene with protein product Approved 10q21.1 10q21.1 FAM13C1 "family with sequence similarity 13, member C1|family with sequence similarity 13, member C" 2002-11-15 2009-01-20 2015-11-18 2016-10-05 220965 ENSG00000148541 OTTHUMG00000018277 uc031wie.2 U79304 XM_005269618 "CCDS31207|CCDS44406|CCDS7255|CCDS53538" Q8NE31 MGI:1918971 RGD:1310149 FAM13C +HGNC:21587 FAM19A1 family with sequence similarity 19 member A1, C-C motif chemokine like protein-coding gene gene with protein product Approved 3p14.1 03p14.1 TAFA-1 family with sequence similarity 19 (chemokine (C-C motif)-like), member A1 2005-01-17 2016-05-23 2016-09-30 407738 ENSG00000183662 OTTHUMG00000158745 uc003dne.4 AY325114 NM_213609 CCDS54606 Q7Z5A9 15028294 MGI:2443695 RGD:1563030 FAM19A1 +HGNC:21589 FAM19A2 family with sequence similarity 19 member A2, C-C motif chemokine like protein-coding gene gene with protein product Approved 12q14.1 12q14.1 TAFA-2 family with sequence similarity 19 (chemokine (C-C motif)-like), member A2 2005-01-17 2016-05-23 2016-09-30 338811 ENSG00000198673 OTTHUMG00000170207 uc001sqx.4 AY325115 NM_178539 CCDS8962 Q8N3H0 15028294 MGI:2143691 RGD:1589429 FAM19A2 +HGNC:21590 FAM19A3 family with sequence similarity 19 member A3, C-C motif chemokine like protein-coding gene gene with protein product Approved 1p13.2 01p13.2 TAFA-3 family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 2005-01-17 2016-05-23 2016-09-30 284467 ENSG00000184599 OTTHUMG00000012020 uc001ecv.4 AY325119 NM_182759 "CCDS856|CCDS30806" Q7Z5A8 15028294 MGI:3046463 RGD:1587462 FAM19A3 +HGNC:21591 FAM19A4 family with sequence similarity 19 member A4, C-C motif chemokine like protein-coding gene gene with protein product Approved 3p14.1 03p14.1 TAFA-4 family with sequence similarity 19 (chemokine (C-C motif)-like), member A4 2005-01-17 2016-05-23 2016-09-30 151647 ENSG00000163377 OTTHUMG00000158744 uc021xag.2 AY325117 NM_182522 CCDS2907 Q96LR4 "15028294|25109685" MGI:2444563 RGD:1597443 FAM19A4 +HGNC:21592 FAM19A5 family with sequence similarity 19 member A5, C-C motif chemokine like protein-coding gene gene with protein product Approved 22q13.32 22q13.32 TAFA-5 family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 2005-01-17 2016-05-23 2016-09-30 25817 ENSG00000219438 OTTHUMG00000150308 uc003bio.6 AY325118 NM_015381 "CCDS46728|CCDS46729" Q7Z5A7 15028294 MGI:2146182 RGD:1562115 FAM19A5 +HGNC:23015 FAM20A FAM20A, golgi associated secretory pathway pseudokinase protein-coding gene gene with protein product Approved 17q24.2 17q24.2 DKFZp434F2322 family with sequence similarity 20, member A 2003-09-03 2016-08-08 2016-09-30 54757 ENSG00000108950 OTTHUMG00000180152 uc002jho.4 AK056789 NM_017565 CCDS11679 Q96MK3 MGI:2388266 RGD:1306364 FAM20A 611062 269646 +HGNC:23017 FAM20B FAM20B, glycosaminoglycan xylosylkinase protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "KIAA0475|GXK1" family with sequence similarity 20, member B 2003-09-03 2016-08-08 2016-09-30 9917 ENSG00000116199 OTTHUMG00000035073 uc001gmc.4 AB007944 NM_014864 CCDS1328 O75063 "9455484|19473117" MGI:2443990 RGD:1311162 FAM20B 611063 2.7.1.- +HGNC:22140 FAM20C FAM20C, golgi associated secretory pathway kinase protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "IMAGE:4942737|DKFZp547D065|DMP4|G-CK" "dentin matrix protein 4|golgi casein kinase" family with sequence similarity 20, member C 2003-09-03 2016-08-08 2016-09-30 56975 ENSG00000177706 OTTHUMG00000151401 uc003sip.4 BC040074 NM_020223 CCDS47522 Q8IXL6 "17369251|17924334|26324849" MGI:2136853 RGD:1311980 FAM20C 611061 138509 2.7.11.1 +HGNC:23416 FAM21A family with sequence similarity 21 member A protein-coding gene gene with protein product Approved 10q11.23 10q11.23 "bA56A21.1|bA98I6.1|FLJ10824" FAM21B "family with sequence similarity 21, member B|family with sequence similarity 21, member A" WASH complex 1331 2004-05-27 2015-11-18 2016-09-30 387680 ENSG00000099290 OTTHUMG00000018225 uc001jjb.4 BC082258 NM_001005751 "CCDS41527|CCDS76303|CCDS81463" Q641Q2 MGI:106463 FAM21A +HGNC:23414 FAM21C family with sequence similarity 21 member C protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "Em:AC012044.3|KIAA0592" family with sequence similarity 21, member C WASH complex 1331 2004-05-27 2015-11-18 2016-09-30 253725 ENSG00000172661 OTTHUMG00000018089 uc001jcu.4 XM_017016014 "CCDS44374|CCDS53528|CCDS53529|CCDS81453" Q9Y4E1 "20357771|20498093" MGI:106463 RGD:735230 FAM21C 613631 +HGNC:23418 FAM21D family with sequence similarity 21 member D other unknown Approved 10q11.23 10q11.23 bA592B15.4 family with sequence similarity 21, member D 2004-05-27 2015-11-18 2016-09-30 653450 NG_012764 Q5SRD0 FAM21D +HGNC:45010 FAM21EP family with sequence similarity 21 member E, pseudogene pseudogene pseudogene Approved 10q11.23 10q11.23 FLJ31813 family with sequence similarity 21, member E, pseudogene 2013-01-07 2015-11-18 2016-09-30 100421577 ENSG00000235618 OTTHUMG00000018221 NG_025438 PGOHUM00000289861 +HGNC:45011 FAM21FP family with sequence similarity 21 member F, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 family with sequence similarity 21, member F, pseudogene 2013-01-07 2015-11-18 2016-09-30 100288690 ENSG00000237840 OTTHUMG00000018087 PGOHUM00000238448 +HGNC:23446 FAM22C entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-02 +HGNC:23470 FAM24A family with sequence similarity 24 member A protein-coding gene gene with protein product Approved 10q26.13 10q26.13 AC073585.4 family with sequence similarity 24, member A 2004-05-27 2015-11-18 2016-09-30 118670 ENSG00000203795 OTTHUMG00000019193 uc001lgv.3 XM_058332 CCDS31304 A6NFZ4 MGI:1915473 RGD:1560948 FAM24A +HGNC:23475 FAM24B family with sequence similarity 24 member B protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "MGC45962|AC073585.2" family with sequence similarity 24, member B 2004-05-27 2015-11-18 2016-09-30 196792 ENSG00000213185 OTTHUMG00000019194 uc001lgt.4 BC031343 NM_152644 CCDS31303 Q8N5W8 12477932 MGI:1916568 FAM24B +HGNC:23436 FAM25A family with sequence similarity 25 member A protein-coding gene gene with protein product Approved 10q23.2 10q23.2 bA96C23.5 family with sequence similarity 25, member A 2004-05-27 2015-11-18 2016-09-30 643161 ENSG00000188100 OTTHUMG00000018664 uc010qmo.3 NM_001146157 CCDS44451 B3EWG3 MGI:1916384 RGD:1584388 FAM25A +HGNC:23584 FAM25BP family with sequence similarity 25 member B, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 bA144G6.8 FAM25B "family with sequence similarity 25, member B|family with sequence similarity 25, member B, pseudogene" 2004-05-27 2014-04-11 2015-11-18 2016-09-30 100132929 ENSG00000273225 OTTHUMG00000189284 NR_104039 B3EWG4 +HGNC:23586 FAM25C family with sequence similarity 25 member C protein-coding gene gene with protein product Approved 10q11.22 10q11.22 bA164N7.4 family with sequence similarity 25, member C 2004-05-27 2015-11-18 2016-09-30 644054 ENSG00000276430 OTTHUMG00000018130 uc010qgj.3 NM_001137548 CCDS76299 B3EWG5 FAM25C +HGNC:23588 FAM25D family with sequence similarity 25 member D other unknown Approved 10q11.23 10q11.23 bA592B15.5 family with sequence similarity 25, member D 2004-05-27 2015-11-18 2016-09-30 728955 A8MYX2 +HGNC:23587 FAM25E family with sequence similarity 25 member E protein-coding gene gene with protein product Approved 10q11.22 10q11.22 AC012044.5 family with sequence similarity 25, member E 2004-05-27 2015-11-18 2016-09-30 643479 ENSG00000231122 OTTHUMG00000018092 XM_017017042 A8MYX2 +HGNC:23590 FAM25G family with sequence similarity 25 member G protein-coding gene gene with protein product Approved 10q11.22 10q11.22 bA301J7.4 family with sequence similarity 25, member G 2004-05-27 2015-11-18 2016-09-30 100133093 ENSG00000189090 OTTHUMG00000018117 uc010qge.4 NM_001137549 CCDS73124 B3EWG6 FAM25G +HGNC:23591 FAM25HP entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:21094 FAM26D family with sequence similarity 26 member D protein-coding gene gene with protein product Approved 6q22.1 06q22.1 FLJ32239 C6orf78 "chromosome 6 open reading frame 78|family with sequence similarity 26, member D" 2003-05-19 2007-03-19 2015-11-18 2016-10-05 221301 ENSG00000164451 OTTHUMG00000015443 uc063qxx.1 AK056801 NM_153036 "CCDS5109|CCDS59032|CCDS59031" Q5JW98 MGI:2685489 RGD:1595701 FAM26D +HGNC:21568 FAM26E family with sequence similarity 26 member E protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "dJ493F7.3|MGC45451" C6orf188 "chromosome 6 open reading frame 188|family with sequence similarity 26, member E" 2003-06-24 2007-03-19 2015-11-18 2016-10-05 254228 ENSG00000178033 OTTHUMG00000015442 uc003pwy.4 BC032556 NM_153711 CCDS5108 Q8N5C1 MGI:2143897 RGD:1310405 FAM26E +HGNC:33391 FAM26F family with sequence similarity 26 member F protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "RP1-93H18.5|OTTHUMP00000017061|OTTHUMP00000017062|dJ93H18.5|INAM" IFN regulatory factor 3-dependent NK-activating molecule C6orf187 "chromosome 6 open reading frame 187|family with sequence similarity 26, member F" 2007-03-19 2015-11-18 2016-09-30 441168 ENSG00000188820 OTTHUMG00000015438 uc003pwv.5 AF086130 NM_001010919 "CCDS34519|CCDS64506" Q5R3K3 27645024 MGI:2443082 RGD:1304835 FAM26F +HGNC:50384 FAM27AP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 PGOHUM00000303925 +HGNC:23667 FAM27B family with sequence similarity 27 member B non-coding RNA RNA, long non-coding Approved 9q21.11 09q21.11 "bA12A20.3|FAM27A2" family with sequence similarity 27, member B 2005-04-01 2015-11-18 2016-09-30 100133121 ENSG00000278763 OTTHUMG00000188586 NR_027422 Q5VT28 FAM27B +HGNC:23668 FAM27C family with sequence similarity 27 member C non-coding RNA RNA, long non-coding Approved 9q13 09q13 "bA374M1.5|FAM27A3|bA7G23.5|FAM27A1" FAM27A "family with sequence similarity 27, member A|family with sequence similarity 27, member C" 2005-04-01 2015-11-18 2016-09-30 100132948 ENSG00000154537 OTTHUMG00000013240 uc064tjf.2 NR_027421 Q5VT28 FAM27C +HGNC:32015 FAM27D1 family with sequence similarity 27 member D1 non-coding RNA RNA, long non-coding Approved 9p11.2 09p11.2 OTTHUMG00000013267 family with sequence similarity 27, member D1 2006-06-30 2015-11-18 2016-09-30 724094 ENSG00000275493 OTTHUMG00000188511 XR_132873 Q5T7N8 FAM27D1 +HGNC:32013 FAM27E2 family with sequence similarity 27 member E2 non-coding RNA RNA, long non-coding Approved 9p11.2 09p11.2 FAM27E1 "family with sequence similarity 27, member E1|family with sequence similarity 27, member E2" 2006-06-30 2015-11-18 2016-09-30 100289124 ENSG00000276135 OTTHUMG00000188514 XR_078687 FAM27E2 +HGNC:28655 FAM27E3 family with sequence similarity 27 member E3 non-coding RNA RNA, long non-coding Approved 9q21.11 09q21.11 MGC42630 family with sequence similarity 27, member E3 2006-06-30 2015-11-18 2016-09-30 100131997 ENSG00000274026 OTTHUMG00000188582 NR_103833 Q08E93 12477932 FAM27E3 +HGNC:44415 FAM27E4 family with sequence similarity 27 member E4 non-coding RNA RNA, long non-coding Approved 9q13 09q13 FAM27E4P "family with sequence similarity 27, member E4, pseudogene|family with sequence similarity 27, member E4" 2012-10-05 2013-02-18 2015-11-18 2016-09-30 100132439 ENSG00000204805 OTTHUMG00000184179 +HGNC:32410 FAM27E5 family with sequence similarity E5 non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 MGC35151 FAM27L family with sequence similarity 27-like 2005-12-20 2016-01-13 2016-01-13 2016-09-30 284123 ENSG00000178130 OTTHUMG00000166302 uc002gyz.6 BC031617 NR_028336 +HGNC:19955 FAM30A family with sequence similarity 30, member A non-coding RNA RNA, long non-coding Approved 14q32.33 14q32.33 HSPC053 "C14orf110|KIAA0125" "chromosome 14 open reading frame 110|KIAA0125" 2003-11-21 2016-07-19 2016-07-19 2016-09-30 9834 ENSG00000226777 OTTHUMG00000152318 uc032bne.1 AB019441 NM_014792 Q9NZY2 8590280 616623 +HGNC:31023 FAM30B family with sequence similarity 30, member B non-coding RNA RNA, long non-coding Approved 15q11.1 15q11.1 HsT16028 KIAA0125P1 KIAA0125 pseudogene 1 2006-01-17 2016-07-19 2016-07-19 2016-10-05 654504 ENSG00000277988 OTTHUMG00000187844 AC021585 PGOHUM00000305908 +HGNC:31024 FAM30C family with sequence similarity 30, member C non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 HsT16041 KIAA0125P2 KIAA0125 pseudogene 2 2006-01-17 2016-07-19 2016-07-19 2016-09-30 654499 ENSG00000259698 OTTHUMG00000172241 AC021585 NG_042315 PGOHUM00000305909 +HGNC:24563 FAM32A family with sequence similarity 32 member A protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "DKFZP586O0120|OTAG-12" family with sequence similarity 32, member A 2004-02-10 2015-11-18 2016-10-05 26017 ENSG00000105058 OTTHUMG00000182279 uc002ndt.4 BC000639 NM_014077 CCDS12341 Q9Y421 "10810093|21339736" MGI:1915172 RGD:1561287 FAM32A 614554 +HGNC:30945 FAM32BP family with sequence similarity 32 member B, pseudogene pseudogene pseudogene Approved 22q11.1 22q11.1 FAM32B "family with sequence similarity 32, member B|family with sequence similarity 32, member B (pseudogene)" 2004-02-10 2015-11-19 2015-11-19 2016-09-30 399656 ENSG00000203416 OTTHUMG00000150068 NG_008703 +HGNC:34239 FAM32CP family with sequence similarity 32 member C, pseudogene pseudogene pseudogene Approved 10q22.2 10q22.2 FAM32C family with sequence similarity 32, member C (pseudogene) 2008-06-06 2015-11-19 2015-11-19 2016-09-30 645646 NG_016627 +HGNC:34240 FAM32DP family with sequence similarity 32 member D, pseudogene pseudogene pseudogene Approved 18q22.1 18q22.1 FAM32D family with sequence similarity 32, member D (pseudogene) 2008-06-06 2015-11-19 2015-11-19 2016-09-30 100190955 NG_008713 +HGNC:34241 FAM32EP family with sequence similarity 32 member E, pseudogene pseudogene pseudogene Approved 12q24.32 12q24.32 FAM32E family with sequence similarity 32, member E (pseudogene) 2008-06-06 2015-11-19 2015-11-19 2016-09-30 100190956 NG_008714 +HGNC:28773 FAM35A family with sequence similarity 35 member A protein-coding gene gene with protein product Approved 10q23.2 10q23.2 "MGC5560|bA163M19.1|FAM35A1" family with sequence similarity 35, member A 2004-04-16 2015-11-18 2016-09-30 54537 ENSG00000122376 OTTHUMG00000018669 uc001kei.5 BC051863 NM_019054 "CCDS7383|CCDS81484" Q86V20 "8619474|9110174" MGI:1922948 RGD:1565067 FAM35A +HGNC:31425 FAM35BP family with sequence similarity 35 member B, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 bA38L15.1 "FAM35B|FAM35EP" "family with sequence similarity 35, member B|family with sequence similarity 35, member E, pseudogene|family with sequence similarity 35, member B, pseudogene" 2004-05-27 2013-01-07 2015-11-18 2016-09-30 414241 ENSG00000165874 OTTHUMG00000018104 NR_027632 PGOHUM00000263361 +HGNC:31427 FAM35CP family with sequence similarity 35 member C, pseudogene pseudogene pseudogene Approved 14q31.3 14q31.3 "FAM35AP|FAM35A2" "family with sequence similarity 35, member A pseudogene|family with sequence similarity 35, member A2 (pseudogene)|family with sequence similarity 35, member C, pseudogene" 2004-04-16 2013-01-07 2015-11-18 2016-09-30 100128781 ENSG00000259096 OTTHUMG00000170727 NG_008816 PGOHUM00000267700 +HGNC:34038 FAM35DP family with sequence similarity 35 member D, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 FAM35B2 "family with sequence similarity 35, member B2|family with sequence similarity 35, member B2 (pseudogene)|family with sequence similarity 35, member D, pseudogene" 2008-03-28 2013-01-07 2015-11-18 2016-09-30 439965 ENSG00000189014 OTTHUMG00000018121 NR_027634.1 PGOHUM00000238772 +HGNC:23955 FAM41AY1 family with sequence similarity 41 member A, Y-linked 1 non-coding RNA RNA, long non-coding Approved Yq11.222 Yq11.222 FAM41AY "family with sequence similarity 41, member A, Y-linked|family with sequence similarity 41, member A, Y-linked 1" 2004-06-02 2009-07-20 2015-11-19 2016-10-05 340618 ENSG00000224989 OTTHUMG00000041970 uc065csq.1 BC042981 NR_028083 12477932 +HGNC:37135 FAM41AY2 family with sequence similarity 41 member A, Y-linked 2 non-coding RNA RNA, long non-coding Approved Yq11.222 Yq11.222 family with sequence similarity 41, member A, Y-linked 2 2009-07-20 2015-11-19 2016-09-30 100302526 ENSG00000226362 OTTHUMG00000041973 uc065ctf.1 NR_028084 +HGNC:31688 FAM41BY entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-08-31 +HGNC:27635 FAM41C family with sequence similarity 41 member C non-coding RNA RNA, long non-coding Approved 1p36.33 01p36.33 family with sequence similarity 41, member C 2004-06-02 2011-08-31 2015-11-18 2016-09-30 284593 ENSG00000230368 OTTHUMG00000002469 uc001abt.5 BC047940 NR_027055 12477932 +HGNC:26888 FAM43A family with sequence similarity 43 member A protein-coding gene gene with protein product Approved 3q29 03q29 FLJ90022 family with sequence similarity 43, member A 2004-07-28 2015-11-18 2016-09-30 131583 ENSG00000185112 OTTHUMG00000156016 uc003fuj.4 AK074503 NM_153690 CCDS33923 Q8N2R8 12477932 MGI:2676309 RGD:1304790 FAM43A +HGNC:31791 FAM43B family with sequence similarity 43 member B protein-coding gene gene with protein product Approved 1p36.12 01p36.12 FLJ44952 family with sequence similarity 43, member B 2004-07-28 2015-11-18 2016-09-30 163933 ENSG00000183114 OTTHUMG00000057491 uc001bdj.4 AK126900 NM_207334 CCDS209 Q6ZT52 21461611 MGI:3651622 RGD:1560959 FAM43B +HGNC:31793 FAM45A family with sequence similarity 45 member A protein-coding gene gene with protein product Approved 10q26.11 10q26.11 family with sequence similarity 45, member A 2004-07-29 2015-11-18 2016-10-05 404636 ENSG00000119979 OTTHUMG00000019143 uc001ldw.5 AF168713 NM_207009 CCDS7609 Q8TCE6 MGI:1915144 RGD:1308326 FAM45A +HGNC:30886 FAM45BP family with sequence similarity 45 member B, pseudogene pseudogene pseudogene Approved Xq26.1 Xq26.1 HT011 FAM45B "family with sequence similarity 45, member B|family with sequence similarity 45, member B (pseudogene)" 2004-07-29 2015-11-18 2015-11-18 2016-09-30 55855 ENSG00000221930 OTTHUMG00000022399 AF220185 NM_018472 Q6NSW5 12477932 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM45B +HGNC:18345 FAM46A family with sequence similarity 46 member A protein-coding gene gene with protein product Approved 6q14.1 06q14.1 FLJ20037 C6orf37 "chromosome 6 open reading frame 37|family with sequence similarity 46, member A" 2002-07-08 2004-08-26 2015-11-18 2016-10-05 55603 ENSG00000112773 OTTHUMG00000015097 uc003pjg.4 AF350451 NM_017633 CCDS34489 Q96IP4 "12054608|17803723" MGI:2670964 RGD:1311381 FAM46A 611357 +HGNC:28273 FAM46B family with sequence similarity 46 member B protein-coding gene gene with protein product Approved 1p36.11 01p36.11 MGC16491 family with sequence similarity 46, member B 2004-08-18 2015-11-18 2016-10-05 115572 ENSG00000158246 OTTHUMG00000004278 uc010ofj.3 AK122816 NM_052943 CCDS294 Q96A09 12477932 MGI:2140500 RGD:1308967 FAM46B +HGNC:24712 FAM46C family with sequence similarity 46 member C protein-coding gene gene with protein product Approved 1p12 01p12 FLJ20202 family with sequence similarity 46, member C 2004-08-18 2015-11-18 2016-09-30 54855 ENSG00000183508 OTTHUMG00000013703 uc001ehe.4 BC036516 NM_017709 CCDS896 Q5VWP2 12477932 MGI:1921895 RGD:1359446 FAM46C 613952 +HGNC:28399 FAM46D family with sequence similarity 46 member D protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "MGC26999|CT1.26|CT112" cancer/testis antigen 112 family with sequence similarity 46, member D 2004-08-18 2015-11-18 2016-09-30 169966 ENSG00000174016 OTTHUMG00000021902 uc004edl.1 BX537938 NM_152630 CCDS14446 Q8NEK8 12477932 MGI:2685223 RGD:1559589 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM46D FAM46D 300976 +HGNC:29962 FAM47A family with sequence similarity 47 member A protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 MGC27003 similar to hypothetical protein FLJ35782 family with sequence similarity 47, member A 2004-08-09 2015-11-18 2016-09-30 158724 ENSG00000185448 OTTHUMG00000021339 uc004ddg.4 BC026171 NM_203408 CCDS43926 Q5JRC9 12477932 MGI:1918114 RGD:2324262 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM47A FAM47A +HGNC:26659 FAM47B family with sequence similarity 47 member B protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 FLJ35782 family with sequence similarity 47, member B 2004-08-09 2015-11-18 2016-09-30 170062 ENSG00000189132 OTTHUMG00000021345 uc004ddi.3 BC035026 NM_152631 CCDS14236 Q8NA70 14702039 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM47B FAM47B +HGNC:25301 FAM47C family with sequence similarity 47 member C protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 family with sequence similarity 47, member C 2006-07-04 2015-11-18 2016-09-30 442444 ENSG00000198173 OTTHUMG00000024025 uc004ddl.3 AK125992 NM_001013736 CCDS35227 Q5HY64 MGI:1918114 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM47C FAM47C +HGNC:34342 FAM47DP family with sequence similarity 47 member D, pseudogene pseudogene pseudogene Approved Xp21.1 Xp21.1 family with sequence similarity 47, member D, pseudogene 2008-07-02 2015-11-18 2016-09-30 139249 ENSG00000174678 OTTHUMG00000033174 AL627244 NG_008058 A6NHR8 PGOHUM00000241236 +HGNC:34343 FAM47E family with sequence similarity 47 member E protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "FLJ42946|LOC100129583" similar to genethonin 1 family with sequence similarity 47, member E 2008-07-02 2015-11-18 2016-09-30 100129583 ENSG00000189157 OTTHUMG00000185390 uc003hjx.4 "AC034139|AK124936|CR591456|CR627383" NM_001136570 "CCDS47081|CCDS58907" Q6ZV65 MGI:2686227 RGD:1585459 FAM47E +HGNC:44667 FAM47E-STBD1 FAM47E-STBD1 readthrough other readthrough Approved 4q21.1 04q21.1 2013-04-23 2015-08-03 100631383 ENSG00000272414 OTTHUMG00000160966 uc003hjy.4 NM_001242939 CCDS58908 +HGNC:25373 FAM49A family with sequence similarity 49 member A protein-coding gene gene with protein product Approved 2p24.2 02p24.2 "DKFZP566A1524|FLJ11080" family with sequence similarity 49, member A 2004-08-20 2015-11-18 2016-10-05 81553 ENSG00000197872 OTTHUMG00000090615 uc002rck.3 AK001942 NM_030797 CCDS1688 Q9H0Q0 MGI:1261783 RGD:1305961 FAM49A +HGNC:25216 FAM49B family with sequence similarity 49 member B protein-coding gene gene with protein product Approved 8q24.21 08q24.21 BM-009 family with sequence similarity 49, member B 2004-08-20 2015-11-18 2016-09-30 51571 ENSG00000153310 OTTHUMG00000164805 uc003ysx.5 AF208851 NM_016623 "CCDS6361|CCDS83327" Q9NUQ9 MGI:1923520 RGD:1307697 FAM49B +HGNC:18786 FAM50A family with sequence similarity 50 member A protein-coding gene gene with protein product Approved Xq28 Xq28 "DXS9928E|XAP5|HXC-26|9F" DNA segment on chromosome X (unique) 9928 expressed sequence family with sequence similarity 50, member A 2004-10-06 2015-11-18 2016-09-30 9130 ENSG00000071859 OTTHUMG00000033292 uc004fll.4 BC000028 NM_004699 CCDS14751 Q14320 "9339379|9039504" MGI:1351626 RGD:1560964 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM50A FAM50A 300453 +HGNC:18789 FAM50B family with sequence similarity 50 member B protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "D6S2654E|X5L" family with sequence similarity 50, member B 2004-10-06 2015-11-18 2016-10-12 26240 ENSG00000145945 OTTHUMG00000014147 uc063lni.1 Y18504 NM_012135 CCDS4487 Q9Y247 10534398 MGI:1351640 RGD:1563458 LRG_1062|http://www.lrg-sequence.org/LRG/LRG_1062 FAM50B 614686 +HGNC:31860 FAM53A family with sequence similarity 53 member A protein-coding gene gene with protein product Approved 4p16.3 04p16.3 DNTNP family with sequence similarity 53, member A 2005-06-17 2015-11-18 2016-09-30 152877 ENSG00000174137 OTTHUMG00000159855 uc021xkl.1 BC070112 NM_001013622 "CCDS33939|CCDS75091" Q6NSI3 MGI:1919225 RGD:1563315 FAM53A +HGNC:28968 FAM53B family with sequence similarity 53 member B protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "bA12J10.2|smp" simplet homolog (zebrafish) KIAA0140 "KIAA0140|family with sequence similarity 53, member B" 2004-03-16 2004-11-24 2015-11-18 2016-09-30 9679 ENSG00000189319 OTTHUMG00000019215 uc001lhv.2 D50930 NM_014661 CCDS7641 Q14153 "8590280|16611694" MGI:1925188 RGD:1310799 FAM53B +HGNC:49499 FAM53B-AS1 FAM53B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q26.13 10q26.13 2013-12-20 2013-12-20 101927944 ENSG00000233334 OTTHUMG00000019216 "BI457689|AA620732|AI470835" XR_246199 +HGNC:1336 FAM53C family with sequence similarity 53 member C protein-coding gene gene with protein product Approved 5q31.2 05q31.2 C5orf6 "chromosome 5 open reading frame 6|family with sequence similarity 53, member C" 2000-07-21 2004-11-26 2015-11-18 2016-10-05 51307 ENSG00000120709 OTTHUMG00000129201 uc003lcw.4 AF251040 NM_016605 CCDS4204 Q9NYF3 "11087669|11161817" MGI:1913556 RGD:1593851 FAM53C 609372 +HGNC:29646 FAM57A family with sequence similarity 57 member A protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "FLJ22282|CT120" family with sequence similarity 57, member A 2005-03-15 2015-11-18 2016-09-30 79850 ENSG00000167695 OTTHUMG00000177491 uc002frp.4 AK025935 NM_024792 "CCDS10996|CCDS82031|CCDS82032" Q8TBR7 12270127 MGI:2151840 RGD:1307493 FAM57A 611627 +HGNC:25295 FAM57B family with sequence similarity 57 member B protein-coding gene gene with protein product Approved 16p11.2 16p11.2 DKFZP434I2117 family with sequence similarity 57, member B 2005-03-15 2015-11-18 2016-09-30 83723 ENSG00000149926 OTTHUMG00000132105 uc002dvt.4 AF370365 NM_031478 "CCDS10667|CCDS81967" Q71RH2 "11230166|23275342" MGI:1916202 RGD:1308215 FAM57B 615175 +HGNC:28434 FAM58A family with sequence similarity 58 member A protein-coding gene gene with protein product Approved Xq28 Xq28 "MGC29729|FLJ21610" cyclin M family with sequence similarity 58, member A 2005-05-19 2012-11-30 2015-11-18 2016-09-30 92002 ENSG00000262919 OTTHUMG00000024206 uc033fau.2 BC032121 NM_152274 CCDS76054 Q8N1B3 "18297069|24218572" MGI:1916359 RGD:1305651 FAM58A 300708 159514 +HGNC:27373 FAM58BP family with sequence similarity 58 member B, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 FAM58B "family with sequence similarity 58, member B|family with sequence similarity 58, member B, pseudogene" 2005-05-19 2011-06-01 2015-11-18 2016-09-30 339521 ENSG00000233827 OTTHUMG00000035720 NG_033015 P0C7Q3 15897902 FAM58BP +HGNC:38436 FAM58CP family with sequence similarity 58 member C, pseudogene pseudogene pseudogene Approved Yq12 Yq12 FAM58Y FAM58AP1 "family with sequence similarity 58, member A pseudogene 1|family with sequence similarity 58, member C, pseudogene" 2010-05-11 2011-06-01 2015-11-18 2016-09-30 100421487 ENSG00000231514 OTTHUMG00000036813 NG_021933 +HGNC:42022 FAM58DP family with sequence similarity 58 member D, pseudogene pseudogene pseudogene Approved 13q12.11 13q12.11 family with sequence similarity 58, member D, pseudogene 2011-06-01 2015-11-18 2016-09-30 100421566 ENSG00000231184 OTTHUMG00000016487 NG_024890 PGOHUM00000248510 +HGNC:30702 FAM60A family with sequence similarity 60 member A protein-coding gene gene with protein product Approved 12p11.21 12p11.21 TERA C12orf14 "chromosome 12 open reading frame 14|family with sequence similarity 60, member A" 2004-01-20 2005-04-07 2015-11-18 2016-09-30 58516 ENSG00000139146 OTTHUMG00000168586 uc001rke.4 AF212220 NM_021238 CCDS8723 Q9NP50 "11042152|22984288|22865885" MGI:1929091 RGD:1595037 FAM60A 615027 +HGNC:19052 FAM60BP family with sequence similarity 60 member B, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 HsT2323 family with sequence similarity 60, member B pseudogene 2005-06-30 2015-11-18 2016-09-30 100421588 ENSG00000263829 OTTHUMG00000179430 NG_026282 PGOHUM00000234904 +HGNC:31737 FAM60CP family with sequence similarity 60 member C, pseudogene pseudogene pseudogene Approved 18q21.32 18q21.32 family with sequence similarity 60, member C pseudogene 2005-04-07 2015-11-18 2016-09-30 728115 ENSG00000267742 OTTHUMG00000179954 NG_027872 PGOHUM00000234941 +HGNC:19896 FAM60DP family with sequence similarity 60 member D, pseudogene pseudogene pseudogene Approved 8p21.2 08p21.2 family with sequence similarity 60, member D pseudogene 2005-04-07 2015-11-18 2016-09-30 646721 ENSG00000253488 OTTHUMG00000163866 NG_022381 PGOHUM00000249270 +HGNC:25648 FAM63A family with sequence similarity 63 member A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "FLJ11280|MINDY-1" family with sequence similarity 63, member A 2005-04-22 2015-11-18 2016-10-05 55793 ENSG00000143409 OTTHUMG00000035061 uc001ewg.4 BC032321 NM_018379 "CCDS976|CCDS30854|CCDS53361|CCDS55635" Q8N5J2 "10718198|27292798" MGI:1922257 RGD:1559660 FAM63A +HGNC:26954 FAM63B family with sequence similarity 63 member B protein-coding gene gene with protein product Approved 15q21.3-q22.1 15q21.3-q22.1 KIAA1164 family with sequence similarity 63, member B 2005-04-22 2015-11-18 2016-10-11 54629 ENSG00000128923 OTTHUMG00000171983 uc002afj.4 AK075319 NM_019092 "CCDS42046|CCDS45268" Q8NBR6 10574461 MGI:2443086 RGD:1311456 FAM63B +HGNC:25483 FAM64A family with sequence similarity 64 member A protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "FLJ10156|FLJ10491|CATS|RCS1" CALM interacting protein expressed in thymus and spleen family with sequence similarity 64, member A 2005-04-29 2015-11-18 2016-09-30 54478 ENSG00000129195 OTTHUMG00000177832 uc002gcu.3 NM_019013 "CCDS32541|CCDS56016" Q9BSJ6 "19383357|16491119" MGI:1924434 RGD:1308747 FAM64A +HGNC:25836 FAM65A family with sequence similarity 65 member A protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ13725 family with sequence similarity 65, member A 2005-04-26 2015-11-18 2016-09-30 79567 ENSG00000039523 OTTHUMG00000137536 uc002eth.4 AK127792 NM_024519 "CCDS10840|CCDS54026|CCDS54027|CCDS54028" Q6ZS17 11572484 MGI:1922937 RGD:1307772 FAM65A +HGNC:13872 FAM65B family with sequence similarity 65 member B protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "KIAA0386|DIFF48|MYONAP" myogenesis-related and NCAM-associated protein homolog (chicken) C6orf32 "chromosome 6 open reading frame 32|family with sequence similarity 65, member B" 2001-01-03 2008-06-13 2015-11-18 2016-10-05 9750 ENSG00000111913 OTTHUMG00000191459 uc063mes.1 U49187 XM_006715279 "CCDS47383|CCDS47384|CCDS69057|CCDS69058|CCDS75410" Q9Y4F9 "9205841|17150207|17825087" MGI:2444879 RGD:1306939 FAM65B 611410 410532 +HGNC:16168 FAM65C family with sequence similarity 65 member C protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "dJ530I15.2|dJ530I15.3" "C20orf175|C20orf176" "chromosome 20 open reading frame 175|chromosome 20 open reading frame 176|family with sequence similarity 65, member C" 2001-07-17 2008-06-13 2015-11-18 2016-09-30 140876 ENSG00000042062 OTTHUMG00000032724 uc010zyt.3 AL133230 XM_011528578 CCDS13431 Q96MK2 MGI:1916803 RGD:1587669 FAM65C +HGNC:30444 FAM66A family with sequence similarity 66 member A non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 family with sequence similarity 66, member A 2005-04-28 2015-11-18 2016-09-30 100133172 ENSG00000227888 OTTHUMG00000165458 uc064kjo.1 NR_026789 +HGNC:28890 FAM66B family with sequence similarity 66 member B non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 family with sequence similarity 66, member B 2005-04-28 2015-11-18 2016-09-30 100128890 ENSG00000215374 OTTHUMG00000165383 uc011kwo.1 NR_027423 +HGNC:21644 FAM66C family with sequence similarity 66 member C non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 family with sequence similarity 66, member C 2005-04-28 2015-11-18 2016-09-30 440078 ENSG00000226711 OTTHUMG00000168638 uc058kvt.1 NR_026788 +HGNC:24159 FAM66D family with sequence similarity 66 member D non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 family with sequence similarity 66, member D 2005-04-28 2015-11-18 2016-09-30 100132923 ENSG00000255052 OTTHUMG00000165269 uc064kis.1 NR_027425 +HGNC:18735 FAM66E family with sequence similarity 66 member E non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 family with sequence similarity 66, member E 2005-04-28 2015-11-18 2016-09-30 100132103 ENSG00000225725 OTTHUMG00000165403 uc011kws.2 NR_027424 P0C841 +HGNC:23819 FAM67A entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-15 +HGNC:24907 FAM67B entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-15 +HGNC:32213 FAM69A family with sequence similarity 69 member A protein-coding gene gene with protein product Approved 1p22.1 01p22.1 FLJ23493 family with sequence similarity 69, member A 2005-08-15 2015-11-18 2016-10-05 388650 ENSG00000154511 OTTHUMG00000010894 uc001dpg.4 AK027146 NM_001006605 "CCDS44173|CCDS72822|CCDS72823|CCDS72824|CCDS72825" Q5T7M9 21334309 MGI:1914516 RGD:1308581 FAM69A 614542 +HGNC:28290 FAM69B family with sequence similarity 69 member B protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "MGC20262|C9orf136" family with sequence similarity 69, member B 2005-08-15 2015-11-18 2016-09-30 138311 ENSG00000165716 OTTHUMG00000020940 uc004cik.4 NM_152421 CCDS7004 Q5VUD6 21334309 MGI:1927576 RGD:1308600 FAM69B 614543 +HGNC:31729 FAM69C family with sequence similarity 69 member C protein-coding gene gene with protein product Approved 18q22.3 18q22.3 C18orf51 "chromosome 18 open reading frame 51|family with sequence similarity 69, member C" 2004-06-22 2009-07-23 2015-11-18 2016-09-30 125704 ENSG00000187773 OTTHUMG00000156984 uc002llk.4 BC019628 XM_058931 CCDS42445 Q0P6D2 21334309 MGI:3041188 RGD:1559694 FAM69C 614544 +HGNC:26541 FAM71A family with sequence similarity 71 member A protein-coding gene gene with protein product Approved 1q32.3 01q32.3 FLJ32796 family with sequence similarity 71, member A 2005-05-31 2015-11-18 2016-09-30 149647 ENSG00000162771 OTTHUMG00000041084 uc001hjk.4 NM_153606 CCDS1507 Q8IYT1 12477932 MGI:3588202 RGD:1561646 FAM71A +HGNC:28397 FAM71B family with sequence similarity 71 member B protein-coding gene gene with protein product Approved 5q33.3 05q33.3 MGC26988 family with sequence similarity 71, member B 2005-05-31 2015-11-18 2016-09-30 153745 ENSG00000170613 OTTHUMG00000130246 uc003lwn.4 NM_130899 CCDS4335 Q8TC56 12477932 MGI:3650836 RGD:1563555 FAM71B +HGNC:49805 FAM71BP1 family with sequence similarity 71 member B pseudogene 1 pseudogene pseudogene Approved 9p21.2 09p21.2 family with sequence similarity 71, member B pseudogene 1 2014-03-06 2015-11-18 2016-09-30 100421478 ENSG00000270683 OTTHUMG00000184661 NG_023885 PGOHUM00000236418 +HGNC:28594 FAM71C family with sequence similarity 71 member C protein-coding gene gene with protein product Approved 12q23.1 12q23.1 MGC39520 family with sequence similarity 71, member C 2006-01-27 2015-11-18 2016-09-30 196472 ENSG00000180219 OTTHUMG00000170311 uc001tgn.4 NM_153364 CCDS9072 Q8NEG0 12477932 FAM71C +HGNC:20101 FAM71D family with sequence similarity 71 member D protein-coding gene gene with protein product Approved 14q23.3 14q23.3 C14orf54 "chromosome 14 open reading frame 54|family with sequence similarity 71, member D" 2003-01-13 2007-11-20 2015-11-18 2016-09-30 161142 ENSG00000172717 OTTHUMG00000142819 uc001xja.2 NM_173526 CCDS9778 Q8N9W8 MGI:1918147 RGD:1564393 FAM71D +HGNC:25107 FAM71E1 family with sequence similarity 71 member E1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 family with sequence similarity 71, member E1 2007-11-20 2015-11-18 2016-09-30 112703 ENSG00000142530 OTTHUMG00000183041 uc002psh.4 XM_011526405 "CCDS33081|CCDS77337" Q6IPT2 MGI:1922788 RGD:1311142 FAM71E1 +HGNC:25278 FAM71E2 family with sequence similarity 71 member E2 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 DKFZp434G1729 C19orf16 "chromosome 19 open reading frame 16|family with sequence similarity 71, member E2" 2004-02-11 2007-11-20 2015-11-18 2016-09-30 284418 ENSG00000180043 OTTHUMG00000170357 uc002qkr.3 AL834316 NM_001145402 Q8N5Q1 MGI:3045311 RGD:1310169 FAM71E2 +HGNC:30704 FAM71F1 family with sequence similarity 71 member F1 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 NYD-SP18 FAM137A "family with sequence similarity 137, member A|family with sequence similarity 71, member F1" 2007-07-24 2007-11-20 2015-11-18 2016-09-30 84691 ENSG00000135248 OTTHUMG00000158276 uc003vno.3 AF367470 NM_032599 "CCDS5804|CCDS64763" Q96KD3 12477932 MGI:3032524 RGD:1564147 FAM71F1 +HGNC:27998 FAM71F2 family with sequence similarity 71 member F2 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 FAM137B "family with sequence similarity 137, member B|family with sequence similarity 71, member F2" 2007-07-24 2007-11-20 2015-11-18 2016-09-30 346653 ENSG00000205085 OTTHUMG00000158275 uc003vnk.6 BC047310 XM_011516128 "CCDS47701|CCDS47702" Q6NXP2 12477932 MGI:2141439 RGD:1561814 FAM71F2 +HGNC:24044 FAM72A family with sequence similarity 72 member A protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "MGC57827|RP11-312O7.1" family with sequence similarity 72, member A 2005-06-03 2015-11-18 2016-09-30 729533 ENSG00000196550 OTTHUMG00000042552 uc001hdr.5 CR407567 XM_011509965 "CCDS73016|CCDS81420" Q5TYM5 26206078 MGI:1919669 RGD:1598023 FAM72A 614710 +HGNC:24805 FAM72B family with sequence similarity 72 member B protein-coding gene gene with protein product Approved 1p11.2 01p11.2 RP11-439A17.6 family with sequence similarity 72, member B 2005-06-03 2015-11-18 2016-10-05 653820 ENSG00000188610 OTTHUMG00000185025 uc031upy.2 AL357493 NM_001100910 "CCDS72848|CCDS81362" Q86X60 26206078 FAM72B 614711 +HGNC:30602 FAM72C family with sequence similarity 72 member C protein-coding gene gene with protein product Approved 1q21.1 01q21.1 RP5-998N21.9 family with sequence similarity 72, member C 2005-06-03 2015-11-18 2016-09-30 554282 ENSG00000263513 OTTHUMG00000041029 uc031uqs.2 AL109948 XM_011509723 CCDS72850 H0Y354 26206078 FAM72C 616853 +HGNC:33593 FAM72D family with sequence similarity 72 member D protein-coding gene gene with protein product Approved 1q21.1 01q21.1 family with sequence similarity 72, member D 2007-08-09 2015-11-18 2016-09-30 728833 ENSG00000215784 OTTHUMG00000074801 uc031ury.2 CR589924 XM_001128582 CCDS72855 Q6L9T8 26206078 FAM72D 614712 +HGNC:32029 FAM74A1 family with sequence similarity 74 member A1 non-coding RNA RNA, long non-coding Approved 9p12 09p12 FAM74A5 "family with sequence similarity 74, member A5|family with sequence similarity 74, member A1" 2006-06-30 2015-11-18 2016-09-30 401507 ENSG00000215112 OTTHUMG00000067121 uc033crc.2 NR_026803 Q5RGS3 FAM74A1 +HGNC:32030 FAM74A2 family with sequence similarity 74 member A2 non-coding RNA RNA, long non-coding Approved 9p12 09p12 family with sequence similarity 74, member A2 2006-06-30 2015-11-18 2016-09-30 653114 XR_036862 Q5RGS3 FAM74A2 +HGNC:32031 FAM74A3 family with sequence similarity 74 member A3 non-coding RNA RNA, long non-coding Approved 9q21.11 09q21.11 OTTHUMG00000067149 family with sequence similarity 74, member A3 2006-06-30 2015-11-18 2016-09-30 728495 ENSG00000274355 OTTHUMG00000188258 NR_026801 Q4VXF1 FAM74A3 +HGNC:32032 FAM74A4 family with sequence similarity 74 member A4 non-coding RNA RNA, long non-coding Approved 9q12 09q12 FLJ45202 family with sequence similarity 74, member A4 2006-06-30 2015-11-18 2016-09-30 401508 ENSG00000274583 OTTHUMG00000188539 NR_026802 Q5TZK3 +HGNC:34036 FAM74A6 family with sequence similarity 74 member A6 non-coding RNA RNA, long non-coding Approved 9q12 09q12 family with sequence similarity 74, member A6 2008-03-28 2015-11-18 2016-09-30 653123 ENSG00000274516 OTTHUMG00000188291 uc004abw.2 NG_009678.1 Q5TZK3 +HGNC:34037 FAM74A7 family with sequence similarity 74 member A7 non-coding RNA RNA, long non-coding Approved 9p11.2-p11.1 09p11.2-p11.1 "family with sequence similarity 74, member A7, pseudogene|family with sequence similarity 74, member A7" 2008-03-28 2015-11-18 2016-10-11 100996582 ENSG00000277260 OTTHUMG00000187514 uc064tia.1 XR_078406 A6NL05 +HGNC:28530 FAM76A family with sequence similarity 76 member A protein-coding gene gene with protein product Approved 1p35.3 01p35.3 MGC34648 family with sequence similarity 76, member A 2005-08-15 2015-11-18 2016-09-30 199870 ENSG00000009780 OTTHUMG00000003729 uc001boq.4 AK098318 NM_152660 "CCDS309|CCDS44092|CCDS44093|CCDS44094|CCDS44095" Q8TAV0 MGI:2385211 RGD:1305162 FAM76A +HGNC:28492 FAM76B family with sequence similarity 76 member B protein-coding gene gene with protein product Approved 11q21 11q21 MGC33371 family with sequence similarity 76, member B 2005-08-15 2015-11-18 2016-09-30 143684 ENSG00000077458 OTTHUMG00000167739 uc001pfn.3 NM_144664 "CCDS41700|CCDS81619" Q5HYJ3 12477932 MGI:1920076 RGD:1311077 FAM76B +HGNC:25465 FAM78A family with sequence similarity 78 member A protein-coding gene gene with protein product Approved 9q34.13 09q34.13 FLJ00024 C9orf59 "chromosome 9 open reading frame 59|family with sequence similarity 78, member A" 2004-01-06 2005-07-18 2015-11-18 2016-10-05 286336 ENSG00000126882 OTTHUMG00000020821 uc004cak.4 AK095423 NM_033387 CCDS6941 Q5JUQ0 11214971 MGI:2443569 RGD:1566351 FAM78A +HGNC:13495 FAM78B family with sequence similarity 78 member B protein-coding gene gene with protein product Approved 1q24.1 01q24.1 family with sequence similarity 78, member B 2005-07-18 2015-11-18 2016-09-30 149297 ENSG00000188859 OTTHUMG00000034705 uc057mzx.1 AL626787 NM_001017961 CCDS30931 Q5VT40 MGI:2443050 RGD:1564387 FAM78B +HGNC:28379 FAM81A family with sequence similarity 81 member A protein-coding gene gene with protein product Approved 15q22.2 15q22.2 MGC26690 family with sequence similarity 81, member A 2005-10-21 2015-11-18 2016-09-30 145773 ENSG00000157470 OTTHUMG00000171915 uc002agc.3 NM_152450 CCDS45269 Q8TBF8 MGI:1924136 RGD:1311958 FAM81A +HGNC:26335 FAM81B family with sequence similarity 81 member B protein-coding gene gene with protein product Approved 5q15 05q15 FLJ25333 family with sequence similarity 81, member B 2005-07-25 2015-11-18 2016-09-30 153643 ENSG00000153347 OTTHUMG00000162837 uc003kla.2 NM_152548 CCDS43341 Q96LP2 MGI:2685122 RGD:1561830 FAM81B +HGNC:28210 FAM83A family with sequence similarity 83 member A protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "MGC14128|BJ-TSA-9" family with sequence similarity 83, member A 2005-07-27 2015-11-18 2016-09-30 84985 ENSG00000147689 OTTHUMG00000165083 uc003ypv.5 BC052300 NM_032899 "CCDS6339|CCDS6340|CCDS75784" Q86UY5 22886303 MGI:2447773 RGD:1565606 FAM83A +HGNC:48658 FAM83A-AS1 FAM83A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 HCCC11 2013-06-03 2013-06-03 100131726 ENSG00000204949 OTTHUMG00000165086 AY211907 NR_024479 +HGNC:21357 FAM83B family with sequence similarity 83 member B protein-coding gene gene with protein product Approved 6p12.1 06p12.1 FLJ30642 C6orf143 "chromosome 6 open reading frame 143|family with sequence similarity 83, member B" 2003-06-09 2006-03-23 2015-11-18 2016-09-30 222584 ENSG00000168143 OTTHUMG00000014899 uc003pck.5 AK055204 XM_294139 CCDS34479 Q5T0W9 22886302 MGI:2685362 RGD:1311988 FAM83B +HGNC:16121 FAM83C family with sequence similarity 83 member C protein-coding gene gene with protein product Approved 20q11.22 20q11.22 dJ614O4.7 C20orf128 "chromosome 20 open reading frame 128|family with sequence similarity 83, member C" 2001-07-17 2006-03-23 2015-11-18 2016-09-30 128876 ENSG00000125998 OTTHUMG00000032332 uc021wck.2 AL121753 NM_178468 CCDS13251 Q9BQN1 MGI:1918655 RGD:1585687 FAM83C +HGNC:16113 FAM83C-AS1 FAM83C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q11.22 20q11.22 dJ614O4.3 "C20orf120|NCRNA00154" "chromosome 20 open reading frame 120|non-protein coding RNA 154|FAM83C antisense RNA 1 (non-protein coding)" 2001-07-17 2011-08-11 2012-08-15 2012-10-12 140846 ENSG00000235214 OTTHUMG00000032327 uc032phx.2 AL121753 NR_109815 +HGNC:16122 FAM83D family with sequence similarity 83 member D protein-coding gene gene with protein product Approved 20q11.23 20q11.23 dJ616B8.3 C20orf129 "chromosome 20 open reading frame 129|family with sequence similarity 83, member D" 2001-07-17 2006-03-23 2015-11-18 2016-09-30 81610 ENSG00000101447 OTTHUMG00000032462 uc061wzh.1 AL023803 XM_017028088 CCDS42872 Q9H4H8 23205133 MGI:1919128 RGD:1565583 FAM83D +HGNC:25972 FAM83E family with sequence similarity 83 member E protein-coding gene gene with protein product Approved 19q13.33 19q13.33 FLJ20200 family with sequence similarity 83, member E 2005-07-27 2015-11-18 2016-09-30 54854 ENSG00000105523 OTTHUMG00000183315 uc002pjn.3 AK000207 NM_017708 CCDS42587 Q2M2I3 MGI:1921063 RGD:1309316 FAM83E +HGNC:25148 FAM83F family with sequence similarity 83 member F protein-coding gene gene with protein product Approved 22q13.1 22q13.1 family with sequence similarity 83, member F 2005-07-27 2015-11-18 2016-09-30 113828 ENSG00000133477 OTTHUMG00000150688 uc021wqa.2 NM_138435 CCDS14000 Q8NEG4 12477932 MGI:2146227 RGD:1562089 FAM83F +HGNC:32554 FAM83G family with sequence similarity 83 member G protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "FLJ41564|PAWS1" protein associated with SMAD1 family with sequence similarity 83, member G 2006-03-22 2015-11-18 2016-09-30 644815 ENSG00000188522 OTTHUMG00000059411 uc002guw.4 AK123558 XM_017024953 CCDS42276 A6ND36 24554596 MGI:1916890 RGD:2322345 FAM83G 615886 +HGNC:24797 FAM83H family with sequence similarity 83 member H protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FLJ46072 family with sequence similarity 83, member H 2006-03-23 2015-11-18 2016-09-30 286077 ENSG00000180921 OTTHUMG00000133559 uc064rej.1 AK127960 NM_198488 CCDS6410 Q6ZRV2 18252228 MGI:2145900 RGD:1305866 FAM83H 611927 139802 +HGNC:48720 FAM83H-AS1 FAM83H antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 onco-lncRNA-3 2013-06-07 2015-07-29 100128338 ENSG00000203499 OTTHUMG00000165151 NR_033849 25864709 +HGNC:20743 FAM84A family with sequence similarity 84 member A protein-coding gene gene with protein product Approved 2p24.3 02p24.3 "NSE1|FLJ35392" neurological/sensory 1 family with sequence similarity 84, member A 2005-07-28 2015-11-18 2016-09-30 151354 ENSG00000162981 OTTHUMG00000119093 uc002rbz.3 "AJ417080|BC026346" NM_145175 CCDS1684 Q96KN4 14702039 MGI:2145011 RGD:1305779 FAM84A 611234 +HGNC:24166 FAM84B family with sequence similarity 84 member B protein-coding gene gene with protein product Approved 8q24.21 08q24.21 "BCMP101|NSE2" "breast cancer membrane-associated protein 101|neurological/sensory 2" family with sequence similarity 84, member B 2005-07-28 2015-11-18 2016-10-05 157638 ENSG00000168672 OTTHUMG00000165034 uc003yrz.3 AJ417849 NM_174911 CCDS6358 Q96KN1 12477722 MGI:3026924 RGD:1562236 FAM84B 609483 +HGNC:17606 FAM85A family with sequence similarity 85 member A other unknown Approved 8p23.1 08p23.1 family with sequence similarity 85, member A 2005-10-05 2015-11-18 2016-09-30 619423 CR620525 XR_948967 +HGNC:32160 FAM85B family with sequence similarity 85 member B other unknown Approved 8p23.1 08p23.1 family with sequence similarity 85, member B 2005-10-05 2015-11-18 2016-09-30 619431 ENSG00000253893 OTTHUMG00000163729 uc064kbs.1 CD106111 +HGNC:28268 FAM86B1 family with sequence similarity 86 member B1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 MGC16279 family with sequence similarity 86, member B1 2005-08-19 2015-11-18 2016-09-30 85002 ENSG00000186523 OTTHUMG00000165298 uc010lse.4 BC007983 NM_032916 CCDS59512 Q8N7N1 12477932 FAM86B1 616122 +HGNC:32222 FAM86B2 family with sequence similarity 86 member B2 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 family with sequence similarity 86, member B2 2005-10-04 2015-11-18 2016-09-30 653333 ENSG00000145002 OTTHUMG00000165462 uc003wvt.5 XM_928336 CCDS59092 P0C5J1 FAM86B2 616123 +HGNC:44371 FAM86B3P family with sequence similarity 86 member B3, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 family with sequence similarity 86, member B3, pseudogene 2012-09-13 2015-11-18 2016-09-30 286042 ENSG00000173295 OTTHUMG00000163669 NR_024361 PGOHUM00000264401 +HGNC:25561 FAM86C1 family with sequence similarity 86 member C1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "FLJ10661|FLJ27199" FAM86C "family with sequence similarity 86, member C|family with sequence similarity 86, member C1" 2006-03-09 2011-07-07 2015-11-18 2016-09-30 55199 ENSG00000158483 OTTHUMG00000160552 uc001oqw.5 AK130709 NM_152563 "CCDS8202|CCDS41686|CCDS44664" Q9NVL1 12477932 FAM86C1 616124 +HGNC:42392 FAM86C2P family with sequence similarity 86 member C2, pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 family with sequence similarity 86, member C2, pseudogene 2011-07-07 2015-11-18 2016-09-30 645332 ENSG00000160172 OTTHUMG00000167222 NR_024249 A6NEL3 PGOHUM00000257838 +HGNC:32659 FAM86DP family with sequence similarity 86 member D, pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 FAM86D "family with sequence similarity 86, member D|family with sequence similarity 86, member D, pseudogene" 2006-05-02 2010-06-04 2015-11-18 2016-09-30 692099 ENSG00000244026 OTTHUMG00000158855 BC016686 NR_024241 +HGNC:28017 FAM86EP family with sequence similarity 86 member E, pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 family with sequence similarity 86, member E, pseudogene 2011-07-01 2015-11-18 2016-09-30 348926 ENSG00000251669 OTTHUMG00000159867 NR_130742 12477932 PGOHUM00000250694 +HGNC:42357 FAM86FP family with sequence similarity 86 member F, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 family with sequence similarity 86, member F, pseudogene 2011-07-01 2015-11-18 2016-09-30 653113 ENSG00000164845 OTTHUMG00000168639 NR_024254 PGOHUM00000239316 +HGNC:42358 FAM86GP family with sequence similarity 86 member G, pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 family with sequence similarity 86, member G, pseudogene 2011-07-01 2015-11-18 2016-09-30 387745 ENSG00000166492 OTTHUMG00000036109 NG_008770 PGOHUM00000242119 +HGNC:42359 FAM86HP family with sequence similarity 86 member H, pseudogene pseudogene pseudogene Approved 3q22.1 03q22.1 family with sequence similarity 86, member H, pseudogene 2011-07-01 2015-11-18 2016-09-30 729375 ENSG00000253540 OTTHUMG00000159796 NR_024252 PGOHUM00000250256 +HGNC:44097 FAM86JP family with sequence similarity 86 member J, pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 family with sequence similarity 86, member J, pseudogene 2012-06-22 2015-11-18 2016-09-30 100125556 ENSG00000171084 OTTHUMG00000159586 NR_024251 Q05BU3 PGOHUM00000250299 +HGNC:44098 FAM86KP family with sequence similarity 86 member K, pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 family with sequence similarity 86, member K, pseudogene 2012-06-28 2015-11-18 2016-09-30 100287013 ENSG00000163612 OTTHUMG00000160154 XM_017008895 PGOHUM00000250752 +HGNC:44099 FAM86LP family with sequence similarity 86 member L, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 family with sequence similarity 86, member L, pseudogene 2012-06-28 2015-11-18 2016-09-30 641924 ENSG00000242731 OTTHUMG00000158493 NG_006619 PGOHUM00000263516 +HGNC:44100 FAM86MP family with sequence similarity 86 member M, pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 family with sequence similarity 86, member M, pseudogene 2012-06-28 2015-11-18 2016-09-30 644517 ENSG00000186234 OTTHUMG00000160252 NG_008782 PGOHUM00000263503 +HGNC:27233 FAM87A family with sequence similarity 87 member A non-coding RNA RNA, long non-coding Approved 8p23.3 08p23.3 family with sequence similarity 87, member A 2005-09-05 2015-11-18 2016-09-30 157693 ENSG00000182366 uc033azq.1 BC037297 NR_103537 P0C7U9 12477932 +HGNC:32236 FAM87B family with sequence similarity 87 member B non-coding RNA RNA, long non-coding Approved 1p36.33 01p36.33 FLJ40008 family with sequence similarity 87, member B 2005-09-05 2015-11-18 2016-09-30 400728 ENSG00000177757 OTTHUMG00000002471 uc031tlt.2 AK097327 NR_103536 FAM87B +HGNC:25057 FAM89A family with sequence similarity 89 member A protein-coding gene gene with protein product Approved 1q42.2 01q42.2 MGC15887 C1orf153 "chromosome 1 open reading frame 153|family with sequence similarity 89, member A" 2005-07-14 2005-09-13 2015-11-18 2016-09-30 375061 ENSG00000182118 OTTHUMG00000037960 uc001hui.3 BC009447 NM_198552 CCDS1590 Q96GI7 12477932 MGI:1916877 RGD:1309879 FAM89A +HGNC:16708 FAM89B family with sequence similarity 89 member B protein-coding gene gene with protein product Approved 11q13.1 11q13.1 family with sequence similarity 89, member B 2005-09-13 2015-11-18 2016-10-05 23625 ENSG00000176973 OTTHUMG00000166499 uc001oem.2 AF052151 NM_152832 "CCDS8105|CCDS44648|CCDS53662" Q8N5H3 "9525630|10512749" MGI:106595 RGD:1311544 FAM89B 616128 +HGNC:25526 FAM90A1 family with sequence similarity 90 member A1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 FLJ10408 family with sequence similarity 90, member A1 2005-09-27 2005-11-20 2015-11-18 2016-09-30 55138 ENSG00000171847 OTTHUMG00000168641 uc001qui.3 AK001270 NM_018088 CCDS31738 Q86YD7 MGI:1921682 RGD:2318111 FAM90A1 613041 +HGNC:32250 FAM90A2P family with sequence similarity 90 member A2, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 family with sequence similarity 90, member A2, pseudogene 2005-09-27 2005-11-20 2015-11-18 2016-09-30 729689 ENSG00000205879 OTTHUMG00000165297 NR_046354 Q658T7 PGOHUM00000258332 +HGNC:32251 FAM90A3P family with sequence similarity 90 member A3, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A3 "family with sequence similarity 90, member A3|family with sequence similarity 90, member A3, pseudogene" 2005-10-04 2012-02-21 2015-11-18 2016-09-30 389611 ENSG00000233132 OTTHUMG00000160359 NG_032074 613042 PGOHUM00000250018 +HGNC:32252 FAM90A4P family with sequence similarity 90 member A4, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A4 "family with sequence similarity 90, member A4|family with sequence similarity 90, member A4, pseudogene" 2005-10-04 2007-04-04 2015-11-18 2016-09-30 441313 ENSG00000249005 OTTHUMG00000160358 NG_006005 PGOHUM00000250019 +HGNC:32253 FAM90A5P family with sequence similarity 90 member A5, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A5 "family with sequence similarity 90, member A5|family with sequence similarity 90, member A5, pseudogene" 2005-10-04 2012-02-21 2015-11-18 2016-09-30 441315 ENSG00000215373 OTTHUMG00000165213 NG_032077 A8MXJ8 613043 PGOHUM00000258352 +HGNC:32254 FAM90A6P family with sequence similarity 90 member A6, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 family with sequence similarity 90, member A6, pseudogene 2005-10-04 2015-11-18 2016-09-30 389618 ENSG00000248944 OTTHUMG00000150266 NG_006009 PGOHUM00000258313 +HGNC:32255 FAM90A7P family with sequence similarity 90 member A7, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A7 "family with sequence similarity 90, member A7|family with sequence similarity 90, member A7, pseudogene" 2005-10-04 2012-02-21 2015-11-18 2016-09-30 441317 ENSG00000236660 OTTHUMG00000150263 NR_046343 A6NKC0 613044 +HGNC:32256 FAM90A8P family with sequence similarity 90 member A8, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A8 "family with sequence similarity 90, member A8|family with sequence similarity 90, member A8, pseudogene" 2005-10-04 2012-02-21 2015-11-18 2016-09-30 441324 ENSG00000224710 OTTHUMG00000165393 NG_032083 A6NJQ4 613045 PGOHUM00000258363 +HGNC:32257 FAM90A9P family with sequence similarity 90 member A9, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A9 "family with sequence similarity 90, member A9|family with sequence similarity 90, member A9, pseudogene" 2005-10-04 2012-02-21 2015-11-18 2016-09-30 441327 ENSG00000235825 OTTHUMG00000165396 NG_032085 A6NNJ1 613046 PGOHUM00000258366 +HGNC:32258 FAM90A10P family with sequence similarity 90 member A10, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A10 "family with sequence similarity 90, member A10|family with sequence similarity 90, member A10, pseudogene" 2005-10-04 2012-02-21 2015-11-18 2016-09-30 441328 ENSG00000254597 OTTHUMG00000165397 NR_046351 A6NDY2 613047 +HGNC:32259 FAM90A11P family with sequence similarity 90 member A11, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A11 "family with sequence similarity 90, member A11|family with sequence similarity 90, member A11, pseudogene" 2005-10-04 2011-08-31 2015-11-18 2016-09-30 441331 ENSG00000233115 OTTHUMG00000163639 NG_006010 PGOHUM00000258325 +HGNC:32260 FAM90A12P family with sequence similarity 90 member A12, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A12 "family with sequence similarity 90, member A12|family with sequence similarity 90, member A12, pseudogene" 2005-10-04 2012-02-21 2015-11-18 2016-09-30 645879 ENSG00000254229 OTTHUMG00000163643 NG_032086 A8MX19 613048 PGOHUM00000258327 +HGNC:32261 FAM90A13P family with sequence similarity 90 member A13, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A13 "family with sequence similarity 90, member A13|family with sequence similarity 90, member A13, pseudogene" 2005-10-05 2012-02-21 2015-11-18 2016-09-30 441314 ENSG00000223885 OTTHUMG00000165212 NG_032076 P0C7W8 613049 PGOHUM00000258351 +HGNC:32262 FAM90A14P family with sequence similarity 90 member A14, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A14 "family with sequence similarity 90, member A14|family with sequence similarity 90, member A14, pseudogene" 2005-10-05 2012-02-21 2015-11-18 2016-09-30 645651 ENSG00000189393 OTTHUMG00000165390 NG_032081 P0C7W9 613050 PGOHUM00000258360 +HGNC:32263 FAM90A15P family with sequence similarity 90 member A15, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A15 "family with sequence similarity 90, member A15|family with sequence similarity 90, member A15, pseudogene" 2005-10-05 2012-02-21 2015-11-18 2016-09-30 389630 ENSG00000230045 OTTHUMG00000160360 NG_032075 P0C7V4 613051 PGOHUM00000250017 +HGNC:32264 FAM90A16P family with sequence similarity 90 member A16, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A16 "family with sequence similarity 90, member A16|family with sequence similarity 90, member A16, pseudogene" 2005-10-05 2011-08-31 2015-11-18 2016-09-30 441323 ENSG00000229477 OTTHUMG00000165392 NG_011769 A6NEW6 PGOHUM00000258362 +HGNC:32265 FAM90A17P family with sequence similarity 90 member A17, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A17 "family with sequence similarity 90, member A17|family with sequence similarity 90, member A17, pseudogene" 2005-10-05 2011-08-31 2015-11-18 2016-09-30 728746 ENSG00000223535 OTTHUMG00000165394 NG_011770 A6NEW6 PGOHUM00000258364 +HGNC:32266 FAM90A18P family with sequence similarity 90 member A18, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A18 "family with sequence similarity 90, member A18|family with sequence similarity 90, member A18, pseudogene" 2005-10-05 2012-02-21 2015-11-18 2016-09-30 441326 ENSG00000231656 OTTHUMG00000165391 NG_032082 A6NE21 613052 PGOHUM00000258361 +HGNC:32267 FAM90A19P family with sequence similarity 90 member A19, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A19 "family with sequence similarity 90, member A19|family with sequence similarity 90, member A19, pseudogene" 2005-10-05 2012-02-21 2015-11-18 2016-09-30 728753 ENSG00000237122 OTTHUMG00000165395 NG_032084 A6NE21 613053 PGOHUM00000258365 +HGNC:32268 FAM90A20P family with sequence similarity 90 member A20, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A20 "family with sequence similarity 90, member A20|family with sequence similarity 90, member A20, pseudogene" 2005-10-05 2012-02-21 2015-11-18 2016-09-30 728430 ENSG00000233295 OTTHUMG00000165214 NG_032078 A6NIJ5 613054 PGOHUM00000258353 +HGNC:32269 FAM90A21P family with sequence similarity 90 member A21, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 family with sequence similarity 90, member A21, pseudogene 2005-10-05 2015-11-18 2016-09-30 619418 ENSG00000234749 OTTHUMG00000150264 NG_005998 PGOHUM00000258315 +HGNC:32270 FAM90A22P family with sequence similarity 90 member A22, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A22 "family with sequence similarity 90, member A22|family with sequence similarity 90, member A22, pseudogene" 2005-10-05 2011-08-31 2015-11-18 2016-09-30 645558 ENSG00000215365 OTTHUMG00000150262 NG_006001 A8MWA6 PGOHUM00000258316 +HGNC:32271 FAM90A23P family with sequence similarity 90 member A23, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A23 "family with sequence similarity 90, member A23 pseudogene|family with sequence similarity 90, member A23|family with sequence similarity 90, member A23, pseudogene" 2005-10-05 2011-08-31 2015-11-18 2016-09-30 645572 ENSG00000241737 OTTHUMG00000150265 NG_006002 A8MXZ1 PGOHUM00000258317 +HGNC:32272 FAM90A24P family with sequence similarity 90 member A24, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 FAM90A24 "family with sequence similarity 90, member A24|family with sequence similarity 90, member A24, pseudogene" 2005-10-05 2008-06-19 2015-11-18 2016-09-30 441332 ENSG00000215354 OTTHUMG00000163642 NG_006004 P0C7X0 PGOHUM00000258326 +HGNC:32246 FAM90A25P family with sequence similarity 90 member A25, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 family with sequence similarity 90, member A25, pseudogene 2007-04-04 2015-11-18 2016-09-30 389633 ENSG00000251402 OTTHUMG00000165461 NG_032087 PGOHUM00000249244 +HGNC:43746 FAM90A26 family with sequence similarity 90 member A26 other unknown Approved 4p16.1 04p16.1 FAM90A26P "family with sequence similarity 90, member A26, pseudogene|family with sequence similarity 90, member A26" 2012-02-22 2013-03-06 2015-11-18 2016-09-30 100287045 ENSG00000229924 OTTHUMG00000160151 uc062vco.1 NG_032089 +HGNC:43617 FAM90A27P family with sequence similarity 90 member A27, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 family with sequence similarity 90, member A27, pseudogene 2012-02-22 2015-11-18 2016-09-30 646508 ENSG00000189348 OTTHUMG00000182909 NR_046365 A6NNH2 PGOHUM00000263732 +HGNC:43747 FAM90A28P family with sequence similarity 90 member A28, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 family with sequence similarity 90, member A28, pseudogene 2012-02-22 2015-11-18 2016-09-30 100128254 ENSG00000269118 NG_028700 PGOHUM00000263685 +HGNC:26306 FAM91A1 family with sequence similarity 91 member A1 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 FLJ23790 family with sequence similarity 91, member A1 2005-10-04 2015-11-18 2016-09-30 157769 ENSG00000176853 OTTHUMG00000133021 uc003yqv.4 AK074370 NM_144963 "CCDS6346|CCDS83322" Q658Y4 12477932 MGI:1277178 RGD:1586304 FAM91A1 +HGNC:51523 FAM91A2P family with sequence similarity 91 member A2, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 family with sequence similarity 91, member A2 pseudogene 2015-02-04 2015-11-18 2016-09-30 101929801 NG_034095 PGOHUM00000296564 +HGNC:32273 FAM91A3P family with sequence similarity 91 member A3, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 family with sequence similarity 91, member A3 pseudogene 2005-10-04 2015-11-18 2016-09-30 729182 ENSG00000242352 OTTHUMG00000041566 NG_007181 +HGNC:51524 FAM91A4P family with sequence similarity 91 member A4, pseudogene pseudogene pseudogene Approved 1p11.2 01p11.2 family with sequence similarity 91, member A4 pseudogene 2015-02-04 2015-11-18 2016-09-30 100132306 NG_022806 PGOHUM00000296501 +HGNC:30452 FAM92A family with sequence similarity 92 member A protein-coding gene gene with protein product Approved 8q22.1 08q22.1 FLJ38979 FAM92A1 "family with sequence similarity 92, member A1|family with sequence similarity 92 member A1" 2005-09-22 2016-09-30 2016-09-30 2016-09-30 137392 ENSG00000188343 OTTHUMG00000164238 uc064ons.1 NM_145269 "CCDS47892|CCDS64933" A1XBS5 "17646714|27528616" MGI:1915349 RGD:1310681 +HGNC:32278 FAM92A1P1 family with sequence similarity 92 member A1 pseudogene 1 pseudogene pseudogene Approved 15q15.1 15q15.1 FAM92A2 "family with sequence similarity 92, member A2|family with sequence similarity 92, member A2 (pseudogene)|family with sequence similarity 92, member A1 pseudogene 1" 2005-09-22 2011-05-03 2015-11-18 2016-09-30 729073 ENSG00000157021 OTTHUMG00000167701 NG_011983 +HGNC:32287 FAM92A1P2 family with sequence similarity 92 member A1 pseudogene 2 pseudogene pseudogene Approved 4q35.1 04q35.1 "MGC71735|MGC102964" FAM92A3 "family with sequence similarity 92, member A3|family with sequence similarity 92, member A1 pseudogene 2" 2005-09-22 2012-04-19 2015-11-18 2016-09-30 403315 ENSG00000230219 OTTHUMG00000160675 BC022019 NR_003612 12477932 +HGNC:24781 FAM92B family with sequence similarity 92 member B protein-coding gene gene with protein product Approved 16q24.1 16q24.1 FLJ44299 family with sequence similarity 92, member B 2005-09-22 2015-11-18 2016-09-30 339145 ENSG00000153789 OTTHUMG00000187060 uc059xyr.1 NM_198491 CCDS32500 Q6ZTR7 27528616 MGI:3588213 RGD:1560673 FAM92B +HGNC:32288 FAM93A entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-15 +HGNC:32289 FAM93B entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-15 +HGNC:28069 FAM95A family with sequence similarity 95 member A non-coding RNA RNA, long non-coding Approved 2q11.1 02q11.1 DKFZp434H0923 family with sequence similarity 95, member A 2013-03-15 2015-11-18 2016-09-30 90499 AL137712 NR_038409 +HGNC:32318 FAM95B1 family with sequence similarity 95 member B1 non-coding RNA RNA, long non-coding Approved 9p11.2 09p11.2 DKFZp686P0734 family with sequence similarity 95, member B1 2008-05-02 2015-11-18 2016-09-30 100133036 ENSG00000223839 OTTHUMG00000058623 uc004acg.4 AL833349 NR_026759 +HGNC:45272 FAM95C family with sequence similarity 95 member C non-coding RNA RNA, long non-coding Approved 9p13.1 09p13.1 family with sequence similarity 95, member C 2013-03-15 2015-11-18 2016-09-30 100289137 ENSG00000273036 OTTHUMG00000186350 uc064tdx.1 NR_047651 +HGNC:26235 FAM96A family with sequence similarity 96 member A protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "FLJ22875|CIA2A" family with sequence similarity 96, member A Cytosolic iron-sulfur assembly components 1028 2005-10-20 2015-11-18 2016-09-30 84191 ENSG00000166797 OTTHUMG00000132961 uc002amt.3 NM_032231 "CCDS10189|CCDS45278" Q9H5X1 "23891004|25716227" MGI:1915500 RGD:1307481 FAM96A +HGNC:43861 FAM96AP1 family with sequence similarity 96 member A pseudogene 1 pseudogene pseudogene Approved 3p24.1 03p24.1 family with sequence similarity 96, member A pseudogene 1 2012-04-04 2015-11-18 2016-09-30 106480777 ENSG00000234048 OTTHUMG00000155722 NG_045669 PGOHUM00000237564 +HGNC:43862 FAM96AP2 family with sequence similarity 96 member A pseudogene 2 pseudogene pseudogene Approved 1q42.13 01q42.13 family with sequence similarity 96, member A pseudogene 2 2012-04-04 2015-11-18 2016-09-30 391174 ENSG00000224566 OTTHUMG00000039501 NG_005999 PGOHUM00000244469 +HGNC:24261 FAM96B family with sequence similarity 96 member B protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "CGI-128|MIP18|CIA2B" family with sequence similarity 96, member B Cytosolic iron-sulfur assembly components 1028 2005-10-20 2015-11-18 2016-09-30 51647 ENSG00000166595 OTTHUMG00000175408 uc059vme.1 NM_016062 CCDS45506 Q9Y3D0 "11042152|10810093|23891004" MGI:1915773 RGD:1585802 FAM96B 614778 +HGNC:24520 FAM98A family with sequence similarity 98 member A protein-coding gene gene with protein product Approved 2p22.3 02p22.3 DKFZP564F0522 family with sequence similarity 98, member A 2005-11-03 2005-11-20 2015-11-18 2016-09-30 25940 ENSG00000119812 OTTHUMG00000152152 uc002rpa.2 NM_015475 CCDS33179 Q8NCA5 24257188 MGI:1919972 RGD:1305486 FAM98A +HGNC:26773 FAM98B family with sequence similarity 98 member B protein-coding gene gene with protein product Approved 15q14 15q14 FLJ38426 family with sequence similarity 98, member B 2005-11-03 2005-11-20 2015-11-18 2016-09-30 283742 ENSG00000171262 OTTHUMG00000129831 uc001zkc.4 NM_173611 CCDS10047 Q52LJ0 12477932 MGI:1915465 RGD:1564603 FAM98B 616142 +HGNC:27119 FAM98C family with sequence similarity 98 member C protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ44669 family with sequence similarity 98, member C 2005-11-03 2015-11-18 2016-09-30 147965 ENSG00000130244 OTTHUMG00000182084 uc002oin.2 NM_174905 CCDS42562 Q17RN3 12477932 MGI:1921083 RGD:1303117 FAM98C +HGNC:32368 FAM99A family with sequence similarity 99 member A (non-protein coding) non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 FLJ42833 "family with sequence similarity 99, member A|family with sequence similarity 99, member A (non-protein coding)" 2005-10-27 2015-11-18 2016-09-30 387742 ENSG00000205866 OTTHUMG00000057555 uc009ycz.4 AK124823 NR_026643 +HGNC:32369 FAM99B family with sequence similarity 99 member B (non-protein coding) non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 DKFZp781M09150 "family with sequence similarity 99, member B|family with sequence similarity 99, member B (non-protein coding)" 2005-10-27 2015-11-18 2016-09-30 100132464 ENSG00000205865 OTTHUMG00000057552 uc010qxa.2 CR627417 NR_026642 +HGNC:31419 FAM102A family with sequence similarity 102 member A protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "Eeig1|bA203J24.7|SYM-3A" sym-3 homolog A (C. elegans) C9orf132 "chromosome 9 open reading frame 132|family with sequence similarity 102, member A" 2005-03-22 2005-11-17 2015-11-18 2016-09-30 399665 ENSG00000167106 OTTHUMG00000020720 uc004bsx.3 NM_001035254 "CCDS6888|CCDS35150" Q5T9C2 MGI:2138935 RGD:1597535 FAM102A 610891 +HGNC:27637 FAM102B family with sequence similarity 102 member B protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "DKFZp779B126|SYM-3B" sym-3 homolog B (C. elegans) family with sequence similarity 102, member B 2005-11-17 2015-11-18 2016-09-30 284611 ENSG00000162636 OTTHUMG00000010967 uc010ouy.3 CR749397 NM_001010883 CCDS30786 Q5T8I3 MGI:3036259 RGD:1310037 FAM102B +HGNC:31022 FAM103A1 family with sequence similarity 103 member A1 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "HsT19360|C15orf18|MGC2560|RAM" RNMT-activating mini protein family with sequence similarity 103, member A1 2005-11-24 2015-11-18 2016-09-30 83640 ENSG00000169612 OTTHUMG00000147357 uc002bjl.3 CR597724 NM_031452 CCDS10321 Q9BTL3 22099306 MGI:1914398 RGD:1310022 FAM103A1 614547 +HGNC:21234 FAM103A2P family with sequence similarity 103 member A2, pseudogene pseudogene pseudogene Approved 6q27 06q27 dJ427A4.2 C6orf119 "chromosome 6 open reading frame 119|family with sequence similarity 103, member A2 pseudogene" 2003-05-29 2005-11-24 2015-11-18 2016-09-30 353267 ENSG00000235272 OTTHUMG00000016003 NG_005047 +HGNC:25918 FAM104A family with sequence similarity 104 member A protein-coding gene gene with protein product Approved 17q25.1 17q25.1 FLJ14775 family with sequence similarity 104, member A 2005-12-16 2015-11-18 2016-09-30 84923 ENSG00000133193 OTTHUMG00000150564 uc002jji.5 AK027681 NM_032837 "CCDS11693|CCDS45766|CCDS74143|CCDS74144" Q969W3 MGI:106351 RGD:1563409 FAM104A +HGNC:25085 FAM104B family with sequence similarity 104 member B protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 FLJ20434 CXorf44 "chromosome X open reading frame 44|family with sequence similarity 104, member B" 2004-09-15 2006-05-16 2015-11-18 2016-10-05 90736 ENSG00000182518 OTTHUMG00000021646 uc004duh.3 BC000919 NM_138362 "CCDS35305|CCDS55422|CCDS55423|CCDS55424|CCDS55425|CCDS55426" Q5XKR9 12477932 RGD:2323310 FAM104B +HGNC:25629 FAM105A family with sequence similarity 105 member A protein-coding gene gene with protein product Approved 5p15.2 05p15.2 "FLJ11127|NET20" family with sequence similarity 105, member A OTU domain containing 669 2005-12-22 2015-11-18 2016-09-30 54491 ENSG00000145569 OTTHUMG00000131056 uc003jfj.4 NM_019018 CCDS3884 Q9NUU6 12477932 MGI:2687281 RGD:1563205 FAM105A +HGNC:25682 FAM106A family with sequence similarity 106 member A other unknown Approved 17p11.2 17p11.2 FLJ11800 family with sequence similarity 106, member A 2006-01-12 2015-11-18 2016-09-30 80039 ENSG00000213077 OTTHUMG00000179516 uc002gtz.3 AK021862 NR_026809 Q4KMX7 14702039 +HGNC:32450 FAM106B family with sequence similarity 106 member B other unknown Approved 17p11.2 17p11.2 family with sequence similarity 106, member B 2006-01-12 2015-11-18 2016-09-30 100996259 BK001591 NR_126160 +HGNC:38396 FAM106CP family with sequence similarity 106 member C, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 FAM106C family with sequence similarity 106, member C, pseudogene 2010-04-30 2011-04-15 2015-11-18 2016-09-30 100129396 ENSG00000266486 OTTHUMG00000178951 NR_026810 P0CH98 +HGNC:38397 FAM106DP family with sequence similarity 106 member D, pseudogene pseudogene pseudogene Approved 17q23.1 17q23.1 FAM106D family with sequence similarity 106, member D, pseudogene 2010-04-30 2011-04-15 2015-11-18 2016-09-30 100874406 ENSG00000266960 OTTHUMG00000179988 NG_032201 PGOHUM00000237453 +HGNC:30827 FAM107A family with sequence similarity 107 member A protein-coding gene gene with protein product Approved 3p14.3-p14.2 03p14.3-p14.2 "DRR1|TU3A" family with sequence similarity 107, member A 2006-01-17 2015-11-18 2016-10-11 11170 ENSG00000168309 OTTHUMG00000159159 uc003dkm.5 AF089854 NM_007177 "CCDS2892|CCDS63672|CCDS63673" O95990 "10564580|10702698" MGI:3041256 RGD:1306327 FAM107A 608295 +HGNC:23726 FAM107B family with sequence similarity 107 member B protein-coding gene gene with protein product Approved 10p13 10p13 "FLJ45505|MGC11034" C10orf45 "chromosome 10 open reading frame 45|family with sequence similarity 107, member B" 2003-12-04 2005-11-20 2015-11-18 2016-10-05 83641 ENSG00000065809 OTTHUMG00000017709 uc001imz.3 AK127413 NM_031453 "CCDS7102|CCDS60486" Q9H098 11230166 MGI:1913790 RGD:1561482 FAM107B +HGNC:26509 FAM109A family with sequence similarity 109 member A protein-coding gene gene with protein product Approved 12q24.12 12q24.12 "FLJ32356|SES1|IPIP27A" "Sesquipedalian-1|inositol polyphosphate phosphatase-interacting protein A" family with sequence similarity 109, member A Pleckstrin homology domain containing 682 2006-01-17 2015-11-18 2016-09-30 144717 ENSG00000198324 OTTHUMG00000169547 uc058tgs.1 BC034809 NM_144671 "CCDS9152|CCDS53833" Q8N4B1 "12477932|21233288" MGI:2442708 RGD:1310656 FAM109A 614239 +HGNC:27161 FAM109B family with sequence similarity 109 member B protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "DKFZp686J07229|SES2|IPIP27B" family with sequence similarity 109, member B Pleckstrin homology domain containing 682 2006-01-17 2015-11-18 2016-09-30 150368 ENSG00000177096 OTTHUMG00000151285 uc003bbz.4 BX648402 NM_001002034 CCDS33655 Q6ICB4 12477932 MGI:2443609 RGD:1586415 FAM109B 614240 +HGNC:16188 FAM110A family with sequence similarity 110 member A protein-coding gene gene with protein product Approved 20p13 20p13 bA371L19.3 C20orf55 "chromosome 20 open reading frame 55|family with sequence similarity 110, member A" 2001-07-17 2007-03-21 2015-11-18 2016-09-30 83541 ENSG00000125898 OTTHUMG00000031649 uc002wef.3 BC012800 NM_031424 CCDS13008 Q9BQ89 17499476 MGI:1921097 RGD:1308904 FAM110A 611393 +HGNC:28587 FAM110B family with sequence similarity 110 member B protein-coding gene gene with protein product Approved 8q12.1 08q12.1 MGC39325 C8orf72 "chromosome 8 open reading frame 72|family with sequence similarity 110, member B" 2005-09-22 2007-03-21 2015-11-18 2016-09-30 90362 ENSG00000169122 OTTHUMG00000164282 uc003xtj.2 U79298 NM_147189 CCDS6170 Q8TC76 "8619474|9110174|17499476" MGI:1916593 RGD:1563403 FAM110B 611394 +HGNC:33340 FAM110C family with sequence similarity 110 member C protein-coding gene gene with protein product Approved 2p25.3 02p25.3 family with sequence similarity 110, member C 2007-03-21 2015-11-18 2016-09-30 642273 ENSG00000184731 OTTHUMG00000151321 uc010yim.3 DQ431183 NM_001077710 CCDS42645 Q1W6H9 "17499476|19698782" MGI:1918813 RGD:1564713 FAM110C 611395 +HGNC:25860 FAM110D family with sequence similarity 110 member D protein-coding gene gene with protein product Approved 1p36.11 01p36.11 FLJ14050 GRRP1 "glycine/arginine rich protein 1|family with sequence similarity 110, member D" 2005-07-26 2011-12-01 2015-11-18 2016-09-30 79927 ENSG00000197245 OTTHUMG00000007537 uc001blk.4 NM_024869 CCDS41285 Q8TAY7 12477932 MGI:1919940 RGD:1564994 +HGNC:24725 FAM111A family with sequence similarity 111 member A protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "FLJ22794|KIAA1895" family with sequence similarity 111, member A 2006-02-06 2015-11-18 2016-09-30 63901 ENSG00000166801 OTTHUMG00000167280 uc001nno.4 AK092953 NM_022074 CCDS7973 Q96PZ2 "11572484|23996431|23684011" MGI:1915508 RGD:1560913 FAM111A 615292 357054 +HGNC:24200 FAM111B family with sequence similarity 111 member B protein-coding gene gene with protein product Approved 11q12.1 11q12.1 CANP family with sequence similarity 111, member B 2006-02-06 2015-11-18 2016-09-30 374393 ENSG00000189057 OTTHUMG00000167279 uc001nnl.5 BC062456 NM_198947 "CCDS7972|CCDS44611" Q6SJ93 24268661 FAM111B 615584 376965 +HGNC:25087 FAM114A1 family with sequence similarity 114 member A1 protein-coding gene gene with protein product Approved 4p14 04p14 Noxp20 family with sequence similarity 114, member A1 2006-09-21 2015-11-18 2016-09-30 92689 ENSG00000197712 OTTHUMG00000128583 uc003gtn.4 NM_138389 "CCDS3447|CCDS82916" Q8IWE2 MGI:1915553 RGD:1560201 FAM114A1 +HGNC:1333 FAM114A2 family with sequence similarity 114 member A2 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 133K02 C5orf3 "chromosome 5 open reading frame 3|family with sequence similarity 114, member A2" 1999-07-22 2008-06-13 2015-11-18 2016-09-30 10827 ENSG00000055147 OTTHUMG00000130147 uc003lvc.5 AF159700 NM_018691 "CCDS4323|CCDS83036" Q9NRY5 10843801 MGI:1917629 RGD:1305362 FAM114A2 +HGNC:24179 FAM117A family with sequence similarity 117 member A protein-coding gene gene with protein product Approved 17q21.33 17q21.33 C/EBP induced protein family with sequence similarity 117, member A 2006-04-26 2015-11-18 2016-09-30 81558 ENSG00000121104 OTTHUMG00000161696 uc002ipk.4 BC037572 NM_030802 CCDS11553 Q9C073 12477932 MGI:2144564 RGD:1561062 FAM117A +HGNC:14440 FAM117B family with sequence similarity 117 member B protein-coding gene gene with protein product Approved 2q33.2 02q33.2 FLJ38771 ALS2CR13 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13|family with sequence similarity 117, member B" 2001-01-26 2008-08-18 2015-11-18 2016-10-05 150864 ENSG00000138439 OTTHUMG00000154550 uc010zhx.3 AB053315 NM_173511 CCDS33362 Q6P1L5 11586298 MGI:1920000 RGD:1307676 FAM117B +HGNC:1313 FAM118A family with sequence similarity 118 member A protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "FLJ20635|bK268H5.C22.4" C22orf8 "chromosome 22 open reading frame 8|family with sequence similarity 118, member A" 2000-03-29 2006-04-26 2015-11-18 2016-10-05 55007 ENSG00000100376 OTTHUMG00000151338 uc003bfz.5 BC013696 NM_017911 CCDS14065 Q9NWS6 12477932 MGI:1920475 RGD:1560783 FAM118A +HGNC:26110 FAM118B family with sequence similarity 118 member B protein-coding gene gene with protein product Approved 11q24.2 11q24.2 FLJ21103 family with sequence similarity 118, member B 2006-04-26 2015-11-18 2016-09-30 79607 ENSG00000197798 OTTHUMG00000165817 uc001qdf.4 BC001340 NM_024556 "CCDS8470|CCDS81647" Q9BPY3 24569877 MGI:1924483 RGD:1307173 FAM118B 616587 +HGNC:13247 FAM120A family with sequence similarity 120A protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "KIAA0183|OSSA" oxidative stess-associated Src activator C9orf10 chromosome 9 open reading frame 10 2002-10-09 2006-07-04 2006-07-04 2016-09-30 23196 ENSG00000048828 OTTHUMG00000020252 uc004atw.5 AF214737 NM_014612 "CCDS6706|CCDS75859" Q9NZB2 14585507 MGI:2446163 RGD:1306643 FAM120A 612265 +HGNC:23389 FAM120AOS family with sequence similarity 120A opposite strand protein-coding gene gene with protein product Approved 9q22.31 09q22.31 C9orf10OS chromosome 9 open reading frame 10 opposite strand 2003-11-14 2006-07-04 2006-07-04 2016-10-05 158293 ENSG00000188938 OTTHUMG00000020251 uc004atu.5 AK056096 NM_001322224 "CCDS6705|CCDS83385" Q5T036 14585507 FAM120AOS +HGNC:21109 FAM120B family with sequence similarity 120B protein-coding gene gene with protein product Approved 6q27 06q27 "PGCC1|CCPG" "PPARgamma constitutive coactivator 1|constitutive coactivator of PPAR-gamma" KIAA1838 KIAA1838 2003-11-21 2006-07-04 2006-07-04 2016-09-30 84498 ENSG00000112584 OTTHUMG00000016080 uc003qxp.5 AB058741 NM_032448 "CCDS5314|CCDS75555|CCDS69243|CCDS78200" Q96EK7 14585507 MGI:1914794 RGD:1310304 FAM120B 612266 +HGNC:16949 FAM120C family with sequence similarity 120C protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "ORF34|FLJ20506" CXorf17 chromosome X open reading frame 17 2004-05-12 2006-07-04 2006-07-04 2016-09-30 54954 ENSG00000184083 OTTHUMG00000021625 uc004dsz.5 AY150025 NM_017848 "CCDS14356|CCDS55421|CCDS75987" Q9NX05 14585507 MGI:2387687 RGD:1564253 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM120C FAM120C 300741 +HGNC:23490 FAM122A family with sequence similarity 122A protein-coding gene gene with protein product Approved 9q21.11 09q21.11 MGC17347 C9orf42 chromosome 9 open reading frame 42 2003-11-20 2006-07-11 2006-07-11 2016-09-30 116224 ENSG00000187866 OTTHUMG00000019971 uc004agw.2 AK126379 NM_138333 CCDS6623 Q96E09 "25735772|27588481" MGI:1915284 RGD:1310316 FAM122A +HGNC:30490 FAM122B family with sequence similarity 122B protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "DKFZp686L20116|RP11-308B5.5" 2006-07-11 2016-09-30 159090 ENSG00000156504 OTTHUMG00000022461 uc004exr.4 BX538218 NM_145284 "CCDS14643|CCDS55497|CCDS55498|CCDS55499" Q7Z309 12477932 MGI:1926005 RGD:6501955 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM122B FAM122B +HGNC:25202 FAM122C family with sequence similarity 122C protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 RP3-473B4.1 2006-07-11 2006-07-11 2016-09-30 159091 ENSG00000156500 OTTHUMG00000022716 uc004exy.3 BC017868 NM_138819 "CCDS14644|CCDS55500|CCDS55501|CCDS76028" Q6P4D5 12477932 MGI:1921116 RGD:1590266 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM122C FAM122C +HGNC:26413 FAM124A family with sequence similarity 124 member A protein-coding gene gene with protein product Approved 13q14.3 13q14.3 FLJ30707 family with sequence similarity 124A 2006-08-11 2015-11-05 2016-09-30 220108 ENSG00000150510 OTTHUMG00000016942 uc001vff.3 AK096364 NM_145019 "CCDS9427|CCDS55900|CCDS81767" Q86V42 12975309 MGI:3645930 RGD:1593344 FAM124A +HGNC:26224 FAM124B family with sequence similarity 124 member B protein-coding gene gene with protein product Approved 2q36.2 02q36.2 FLJ22746 family with sequence similarity 124B 2006-08-11 2015-11-05 2016-09-30 79843 ENSG00000124019 OTTHUMG00000133168 uc002vnx.4 AK075126 NM_024785 "CCDS2461|CCDS46527" Q9H5Z6 12477932 MGI:3026880 RGD:1589866 FAM124B +HGNC:24587 FAM126A family with sequence similarity 126 member A protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "DRCTNNB1A|HCC|HYCC1|hyccin" down regulated by Ctnnb1, a family with sequence similarity 126, member A 2006-09-06 2015-11-18 2016-09-30 84668 ENSG00000122591 OTTHUMG00000128435 uc003svm.5 BC018710 NM_032581 CCDS5377 Q9BYI3 "10910037|16951682" MGI:2149839 RGD:1562906 FAM126A 610531 121688 +HGNC:28593 FAM126B family with sequence similarity 126 member B protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "MGC39518|HYCC2" family with sequence similarity 126, member B 2006-09-06 2015-11-18 2016-09-30 285172 ENSG00000155744 OTTHUMG00000132823 uc002uws.4 BC039295 NM_173822 CCDS2335 Q8IXS8 12477932 MGI:1098784 RGD:1309752 FAM126B +HGNC:2569 FAM127A family with sequence similarity 127 member A protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "Mart8|Mar8|MAR8C" CXX1 "CAAX box 1|family with sequence similarity 127, member A" 1999-01-11 2006-11-16 2015-11-18 2016-10-05 8933 ENSG00000134590 OTTHUMG00000022465 uc004eyd.4 Y13374 NM_001078171 CCDS43997 "A6ZKI3|O15255" "9403077|15716091|16093683" "MGI:1913408|MGI:3576504|MGI:1920115" FAM127A 300213 +HGNC:24514 FAM127B family with sequence similarity 127 member B protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "DKFZP564B147|MAR8A|CXX1b" family with sequence similarity 127, member B 2006-11-16 2015-11-18 2016-09-30 26071 ENSG00000203950 OTTHUMG00000022466 uc004eyf.4 AL117556 NM_001078172 CCDS43998 Q9BWD3 "9403077|15716091" "MGI:1913408|MGI:3576504|MGI:1920115" RGD:1593086 FAM127B +HGNC:33156 FAM127C family with sequence similarity 127 member C protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "MAR8B|CXX1c" family with sequence similarity 127, member C 2006-11-16 2015-11-18 2016-09-30 441518 ENSG00000212747 OTTHUMG00000022464 uc004eyc.2 BC048268 NM_001078173 CCDS43996 Q17RB0 "9403077|15716091" "MGI:1913408|MGI:3576504|MGI:1920115" RGD:1595540 FAM127C +HGNC:16784 FAM129A family with sequence similarity 129 member A protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "NIBAN|GIG39" cell growth inhibiting protein 39 C1orf24 "chromosome 1 open reading frame 24|family with sequence similarity 129, member A" 2001-10-08 2006-11-23 2015-11-18 2016-10-05 116496 ENSG00000135842 OTTHUMG00000035388 uc001gra.5 AF288391 XM_011509140 CCDS1364 Q9BZQ8 "15085203|16444351" MGI:2137237 RGD:71088 FAM129A +HGNC:25282 FAM129B family with sequence similarity 129 member B protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "DKFZP434H0820|FLJ13518|FLJ22151|FLJ22298|bA356B19.6|MINERVA" C9orf88 "chromosome 9 open reading frame 88|family with sequence similarity 129, member B" 2004-02-19 2006-11-23 2015-11-18 2016-10-05 64855 ENSG00000136830 OTTHUMG00000020705 uc004brh.5 AF151783 NM_022833 "CCDS35144|CCDS35145" Q96TA1 "14702039|19362540" MGI:2442910 RGD:1307018 FAM129B 614045 +HGNC:24130 FAM129C family with sequence similarity 129 member C protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FLJ39802|BCNP1" family with sequence similarity 129, member C 2006-11-23 2015-11-18 2016-09-30 199786 ENSG00000167483 OTTHUMG00000182892 uc060vkd.1 AY254198 NM_173544 "CCDS12362|CCDS42521|CCDS82314|CCDS82315|CCDS82317" Q86XR2 12886250 MGI:3686743 RGD:1566103 FAM129C 609967 +HGNC:28308 FAM131A family with sequence similarity 131 member A protein-coding gene gene with protein product Approved 3q27.1 03q27.1 MGC21688 C3orf40 "chromosome 3 open reading frame 40|family with sequence similarity 131, member A" 2006-01-06 2007-03-20 2015-11-18 2016-09-30 131408 ENSG00000175182 OTTHUMG00000156206 uc003foe.4 BC026221 NM_144635 "CCDS3262|CCDS54689" Q6UXB0 12975309 MGI:1925658 RGD:2322069 FAM131A +HGNC:22202 FAM131B family with sequence similarity 131 member B protein-coding gene gene with protein product Approved 7q34 07q34 KIAA0773 family with sequence similarity 131, member B 2007-03-20 2015-11-18 2016-09-30 9715 ENSG00000159784 OTTHUMG00000152697 uc064ivp.1 BC045611 NM_014690 "CCDS5882|CCDS47734" Q86XD5 MGI:1923406 RGD:1560653 FAM131B +HGNC:26717 FAM131C family with sequence similarity 131 member C protein-coding gene gene with protein product Approved 1p36.13 01p36.13 FLJ36766 C1orf117 "chromosome 1 open reading frame 117|family with sequence similarity 131, member C" 2005-06-14 2007-03-20 2015-11-18 2016-09-30 348487 ENSG00000185519 OTTHUMG00000009525 uc001axz.5 NM_182623 CCDS41270 Q96AQ9 12477932 MGI:2685539 RGD:1590955 FAM131C +HGNC:32308 FAM132A family with sequence similarity 132 member A protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "MGC105127|C1QTNF12|CTRP12" "adipolin|adipose-derived insulin-sensitizing factor" C1QDC2 "C1q domain containing 2|family with sequence similarity 132, member A" 2005-09-27 2007-03-27 2015-11-18 2016-09-30 388581 ENSG00000184163 OTTHUMG00000001412 uc001adl.3 BC089443 XM_371208 CCDS30554 Q5T7M4 21849507 MGI:1914639 RGD:1307059 FAM132A 616593 +HGNC:26748 FAM133A family with sequence similarity 133 member A protein-coding gene gene with protein product Approved Xq21.32 Xq21.32 "RP1-32F7.2|FLJ37659|CT115" cancer/testis antigen 115 family with sequence similarity 133, member A 2007-04-26 2015-11-18 2016-09-30 286499 ENSG00000179083 OTTHUMG00000021975 uc022bzw.1 AK094978 NM_173698 CCDS14466 Q8N9E0 RGD:9153529 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM133A FAM133A +HGNC:28629 FAM133B family with sequence similarity 133 member B protein-coding gene gene with protein product Approved 7q21.2 07q21.2 MGC40405 family with sequence similarity 133, member B 2007-04-26 2015-11-18 2016-09-30 257415 ENSG00000234545 OTTHUMG00000155863 uc003umc.5 NM_001040057 "CCDS47640|CCDS47641" Q5BKY9 12477932 MGI:1915402 RGD:1306302 FAM133B +HGNC:44190 FAM133CP family with sequence similarity 133 member C, pseudogene pseudogene pseudogene Approved 10q21.1 10q21.1 family with sequence similarity 133, member C, pseudogene 2012-06-30 2015-11-18 2016-09-30 728640 ENSG00000183055 OTTHUMG00000018272 NR_027508 PGOHUM00000238809 +HGNC:44192 FAM133DP family with sequence similarity 133 member D, pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 family with sequence similarity 133, member D, pseudogene 2012-06-30 2015-11-18 2016-09-30 728066 ENSG00000230562 OTTHUMG00000153949 NR_034169 PGOHUM00000240399 +HGNC:28450 FAM134A family with sequence similarity 134 member A protein-coding gene gene with protein product Approved 2q35 02q35 MGC3035 C2orf17 "chromosome 2 open reading frame 17|family with sequence similarity 134, member A" 2004-01-09 2007-05-01 2015-11-18 2016-10-05 79137 ENSG00000144567 OTTHUMG00000154577 uc002vjw.5 AK074983 NM_024293 CCDS2434 Q8NC44 MGI:2388278 RGD:1306844 FAM134A +HGNC:25964 FAM134B family with sequence similarity 134 member B protein-coding gene gene with protein product Approved 5p15.1 05p15.1 "FLJ20152|JK1" family with sequence similarity 134, member B 2007-05-01 2015-11-18 2016-10-12 54463 ENSG00000154153 OTTHUMG00000161788 uc003jfs.4 BC053326 NM_001034850 "CCDS43304|CCDS43305" Q9H6L5 "19838196|24327336" MGI:1913520 RGD:9390936 LRG_363|http://www.lrg-sequence.org/LRG/LRG_363 FAM134B 613114 218033 +HGNC:27258 FAM134C family with sequence similarity 134 member C protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "DKFZp686B1036|FLJ33806" family with sequence similarity 134, member C 2007-05-01 2015-11-18 2016-09-30 162427 ENSG00000141699 OTTHUMG00000180275 uc060fkv.1 BC049370 NM_178126 CCDS11432 Q86VR2 12477932 MGI:1915248 RGD:1561189 FAM134C 616498 +HGNC:21084 FAM135A family with sequence similarity 135 member A protein-coding gene gene with protein product Approved 6q13 06q13 FLJ20176 KIAA1411 "KIAA1411|family with sequence similarity 135, member A" 2003-11-21 2007-05-11 2015-11-18 2016-09-30 57579 ENSG00000082269 OTTHUMG00000014991 uc003pfh.4 AK000183 NM_020819 "CCDS34481|CCDS47448|CCDS55028|CCDS83104" Q9P2D6 10718198 MGI:1915437 RGD:1304927 FAM135A +HGNC:28029 FAM135B family with sequence similarity 135 member B protein-coding gene gene with protein product Approved 8q24.23 08q24.23 C8ORFK32 family with sequence similarity 135, member B 2007-05-11 2015-11-18 2016-09-30 51059 ENSG00000147724 OTTHUMG00000149864 uc003yuy.3 AB196635 NM_015912 CCDS6375 Q49AJ0 "8619474|9110174" MGI:1917613 RGD:1308133 FAM135B +HGNC:25911 FAM136A family with sequence similarity 136 member A protein-coding gene gene with protein product Approved 2p13.3 02p13.3 FLJ14668 hypothetical protein FLJ14668 family with sequence similarity 136, member A 2007-07-10 2015-11-18 2016-10-05 84908 ENSG00000035141 OTTHUMG00000129668 uc002sgq.5 BC014975 NM_032822 CCDS1904 Q96C01 25305078 MGI:1913738 RGD:1304825 FAM136A 616275 +HGNC:21110 FAM136BP family with sequence similarity 136 member B, pseudogene pseudogene pseudogene Approved 6p25.2 06p25.2 dJ40E16.3 "C6orf87|FAM136B" "chromosome 6 open reading frame 87|family with sequence similarity 136, member B|family with sequence similarity 136, member B, pseudogene" 2003-11-26 2010-12-20 2015-11-18 2016-09-30 387071 ENSG00000232654 OTTHUMG00000014137 NG_028136 PGOHUM00000243469 +HGNC:32334 FAM138A family with sequence similarity 138 member A non-coding RNA RNA, long non-coding Approved 1p36.33 01p36.33 F379 family with sequence similarity 138, member A 2007-08-14 2015-11-18 2016-09-30 645520 ENSG00000237613 OTTHUMG00000000960 uc001aak.4 NR_026818 "11779631|15233989" +HGNC:33582 FAM138B family with sequence similarity 138 member B non-coding RNA RNA, long non-coding Approved 2q14.1 02q14.1 F379 family with sequence similarity 138, member B 2007-08-14 2015-11-18 2016-10-05 654412 ENSG00000226516 OTTHUMG00000047820 uc002tjz.3 NR_026821 "11779631|15233989" +HGNC:32333 FAM138C family with sequence similarity 138 member C non-coding RNA RNA, long non-coding Approved 9p24.3 09p24.3 F379 family with sequence similarity 138, member C 2007-08-14 2015-11-18 2016-09-30 654835 ENSG00000218839 OTTHUMG00000019422 uc003zfv.4 NR_026822 "11779631|15233989" +HGNC:33583 FAM138D family with sequence similarity 138 member D non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 F379 family with sequence similarity 138, member D 2007-08-14 2015-11-18 2016-09-30 677784 ENSG00000249054 OTTHUMG00000167962 uc010scw.2 NR_026823 "11779631|15233989" +HGNC:32335 FAM138E family with sequence similarity 138 member E non-coding RNA RNA, long non-coding Approved 15q26.3 15q26.3 F379 family with sequence similarity 138, member E 2007-08-14 2015-11-18 2016-09-30 100124412 ENSG00000248893 OTTHUMG00000172273 uc010bpi.4 NR_026819 "11779631|15233989" +HGNC:33581 FAM138F family with sequence similarity 138 member F non-coding RNA RNA, long non-coding Approved 19p13.3 19p13.3 F379 family with sequence similarity 138, member F 2007-08-14 2015-11-18 2016-09-30 641702 ENSG00000282591 OTTHUMG00000180467 uc284pkl.1 NR_026820 "11779631|15233989" +HGNC:24527 FAM149A family with sequence similarity 149 member A protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "DKFZP564J102|MST119|MSTP119" family with sequence similarity 149, member A 2007-11-14 2015-11-18 2016-09-30 25854 ENSG00000109794 OTTHUMG00000160565 uc063bno.1 AK057166 NM_001006655 CCDS34117 A5PLN7 MGI:2387177 RGD:1586153 FAM149A +HGNC:29162 FAM149B1 family with sequence similarity 149 member B1 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 KIAA0974 "KIAA0974|family with sequence similarity 149, member B1" 2004-09-07 2007-11-14 2015-11-18 2016-09-30 317662 ENSG00000138286 OTTHUMG00000067794 uc009xqz.4 AB023191 NM_173348 CCDS44435 Q96BN6 10231032 MGI:2145567 RGD:1359592 FAM149B1 +HGNC:31735 FAM149B1P1 family with sequence similarity 149 member B1 pseudogene 1 pseudogene pseudogene Approved 15q26.2 15q26.2 "KIAA0974P|FAM149B2" "KIAA0974 pseudogene|family with sequence similarity 149, member B2|family with sequence similarity 149, member B1 pseudogene 1" 2007-08-01 2012-04-19 2015-11-18 2016-09-30 388181 ENSG00000214424 OTTHUMG00000165496 NG_029289 PGOHUM00000257996 +HGNC:33775 FAM150A family with sequence similarity 150 member A protein-coding gene gene with protein product Approved 8q11.23 08q11.23 "UNQ9433|AUGB" augmentor-beta family with sequence similarity 150, member A 2007-12-18 2015-11-18 2016-09-30 389658 ENSG00000196711 OTTHUMG00000164256 uc003xrd.4 NM_207413 CCDS6150 Q6UXT8 "26630010|26418745" MGI:3645495 RGD:1583530 FAM150A +HGNC:27683 FAM150B family with sequence similarity 150 member B protein-coding gene gene with protein product Approved 2p25.3 02p25.3 AUGA augmentor-alpha family with sequence similarity 150, member B 2007-12-18 2015-11-18 2016-09-30 285016 ENSG00000189292 OTTHUMG00000151366 uc002qwi.5 NM_001002919 CCDS46218 Q6UX46 "26630010|26418745" MGI:3697448 RGD:1587117 FAM150B +HGNC:25032 FAM151A family with sequence similarity 151 member A protein-coding gene gene with protein product Approved 1p32.3 01p32.3 MGC27169 C1orf179 "chromosome 1 open reading frame 179|family with sequence similarity 151, member A" 2005-07-26 2007-12-18 2015-11-18 2016-09-30 338094 ENSG00000162391 OTTHUMG00000009888 uc001cxn.4 AK091901 NM_176782 CCDS594 Q8WW52 17273976 MGI:2657115 RGD:1359194 FAM151A +HGNC:33716 FAM151B family with sequence similarity 151 member B protein-coding gene gene with protein product Approved 5q14.1 05q14.1 UNQ9217 family with sequence similarity 151, member B 2007-12-18 2015-11-18 2016-09-30 167555 ENSG00000152380 OTTHUMG00000131303 uc003kgv.3 NM_205548 CCDS4051 Q6UXP7 MGI:1921192 RGD:1561110 FAM151B +HGNC:29940 FAM153A family with sequence similarity 153 member A protein-coding gene gene with protein product Approved 5q35.3 05q35.3 NY-REN-7 NY REN 7 antigen family with sequence similarity 153, member A 2008-01-09 2015-11-18 2016-09-30 285596 ENSG00000170074 OTTHUMG00000163394 uc010jkp.2 AB018295 NM_173663 CCDS34305 Q9UHL3 "10508479|9872452" FAM153A +HGNC:27323 FAM153B family with sequence similarity 153 member B protein-coding gene gene with protein product Approved 5q35.2 05q35.2 family with sequence similarity 153, member B 2008-01-09 2015-11-18 2016-09-30 202134 ENSG00000182230 OTTHUMG00000163181 uc010jjy.2 AK055006 NM_001079529 CCDS43401 P0C7A2 FAM153B +HGNC:33936 FAM153C family with sequence similarity 153 member C other unknown Approved 5q35.3 05q35.3 NY-REN-7-like family with sequence similarity 153, member C 2008-01-09 2015-11-18 2016-09-30 653316 ENSG00000204677 OTTHUMG00000163459 uc063kiz.1 BC101338 NM_001079527 Q494X1 FAM153C +HGNC:33877 FAM155A family with sequence similarity 155 member A protein-coding gene gene with protein product Approved 13q33.3 13q33.3 family with sequence similarity 155, member A 2008-04-15 2015-11-18 2016-09-30 728215 ENSG00000204442 OTTHUMG00000017326 uc001vql.4 L10374 NM_001080396 CCDS32006 B1AL88 MGI:2142765 RGD:1559498 FAM155A +HGNC:41503 FAM155A-IT1 FAM155A intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q33.3 13q33.3 FAM155A intronic transcript 1 (non-protein coding) 2011-08-15 2015-02-25 2015-02-25 100874375 ENSG00000227248 OTTHUMG00000017327 uc001vqm.5 NR_046848 +HGNC:30701 FAM155B family with sequence similarity 155 member B protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 TED "TMEM28|CXorf63" "transmembrane protein 28|chromosome X open reading frame 63|family with sequence similarity 155, member B" 2004-06-02 2008-04-15 2015-11-18 2016-09-30 27112 ENSG00000130054 OTTHUMG00000021756 uc004dxk.4 AF087142 NM_015686 CCDS35317 O75949 MGI:3648377 RGD:1584125 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FAM155B FAM155B +HGNC:30114 FAM156A family with sequence similarity 156 member A protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 PRO0659 TMEM29 "transmembrane protein 29|family with sequence similarity 156, member A" 2004-06-02 2008-04-22 2015-11-18 2016-09-30 29057 ENSG00000268350 OTTHUMG00000188220 uc022bwy.2 AF090943 NM_014138 CCDS35297 Q8NDB6 12477932 FAM156A +HGNC:31962 FAM156B family with sequence similarity 156 member B protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 TMEM29B "transmembrane protein 29B|family with sequence similarity 156, member B" 2007-08-03 2008-04-22 2015-11-18 2016-09-30 727866 ENSG00000179304 OTTHUMG00000188219 uc064zir.1 NM_001321183 CCDS43957 Q8NDB6 16382448 RGD:1584469 FAM156B +HGNC:34079 FAM157A family with sequence similarity 157 member A other unknown Approved 3q29 03q29 family with sequence similarity 157, member A 2008-12-08 2015-11-18 2016-09-30 728262 ENSG00000236438 OTTHUMG00000155433 uc062sqb.1 NM_001145248 C9JC47 FAM157A +HGNC:34080 FAM157B family with sequence similarity 157 member B other unknown Approved 9q34.3 09q34.3 family with sequence similarity 157, member B 2008-12-08 2015-11-18 2016-10-05 100132403 ENSG00000233013 OTTHUMG00000021000 uc011mfe.2 NM_001145249 P0CG42 +HGNC:34081 FAM157C family with sequence similarity 157 member C non-coding RNA RNA, long non-coding Approved 16q24.3 16q24.3 family with sequence similarity 157, member C 2008-12-08 2013-01-18 2015-11-18 2016-09-30 100996541 ENSG00000260528 OTTHUMG00000172848 uc002fqr.3 NR_126161 P0CG43 +HGNC:28757 FAM159A family with sequence similarity 159 member A protein-coding gene gene with protein product Approved 1p32.3 01p32.3 MGC52498 family with sequence similarity 159, member A 2008-06-05 2015-11-18 2016-09-30 348378 ENSG00000182183 OTTHUMG00000008330 uc001cuf.4 NM_001042693 CCDS41336 Q6UWV7 12477932 MGI:3651644 RGD:1593542 FAM159A +HGNC:34236 FAM159B family with sequence similarity 159 member B protein-coding gene gene with protein product Approved 5q12.3 05q12.3 family with sequence similarity 159, member B 2008-06-05 2015-11-18 2016-09-30 100132916 ENSG00000145642 OTTHUMG00000162292 uc021xzg.2 XM_001720158 CCDS47220 A6NKW6 MGI:1925053 RGD:1564672 +HGNC:34237 FAM160A1 family with sequence similarity 160 member A1 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 FLJ43373 family with sequence similarity 160, member A1 2008-06-05 2015-11-18 2016-09-30 729830 ENSG00000164142 OTTHUMG00000161675 uc003imj.2 NM_001109977 CCDS47146 Q05DH4 MGI:2444746 RGD:1565007 FAM160A1 +HGNC:25378 FAM160A2 family with sequence similarity 160 member A2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "FLJ22665|KIAA1759|DKFZP566M1046|FHIP" FTS and Hook interacting protein C11orf56 "chromosome 11 open reading frame 56|family with sequence similarity 160, member A2" 2006-02-17 2008-06-05 2015-11-18 2016-09-30 84067 ENSG00000051009 OTTHUMG00000133379 uc001mck.5 NM_032127 "CCDS7760|CCDS44530" Q8N612 "11230166|11214970|18799622" MGI:1921599 RGD:1359585 FAM160A2 +HGNC:29320 FAM160B1 family with sequence similarity 160 member B1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 bA106M7.3 KIAA1600 "KIAA1600|family with sequence similarity 160, member B1" 2004-02-18 2008-06-05 2015-11-18 2016-10-05 57700 ENSG00000151553 OTTHUMG00000019092 uc001lcb.4 AB046820 XM_049351 "CCDS31290|CCDS44480" Q5W0V3 10997877 MGI:2147545 RGD:1306116 FAM160B1 +HGNC:16492 FAM160B2 family with sequence similarity 160 member B2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 FLJ21801 RAI16 "retinoic acid induced 16|family with sequence similarity 160, member B2" 2001-12-07 2008-06-05 2015-11-18 2016-09-30 64760 ENSG00000158863 OTTHUMG00000097088 uc011kyx.3 AK025454 XR_001745574 CCDS6021 Q86V87 "22971576|15626329" MGI:3036290 RGD:1308870 FAM160B2 +HGNC:25808 FAM161A family with sequence similarity 161 member A protein-coding gene gene with protein product Approved 2p15 02p15 FLJ13305 RP28 "retinitis pigmentosa 28 (autosomal recessive)|family with sequence similarity 161, member A" 2008-06-05 2015-11-18 2016-09-30 84140 ENSG00000170264 OTTHUMG00000152165 uc010ypo.3 NM_032180 "CCDS42687|CCDS56120" Q3B820 "10507729|20705278|20705279" MGI:1921123 RGD:1304999 FAM161A 613596 239962 +HGNC:19854 FAM161B family with sequence similarity 161 member B protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FLJ31697 C14orf44 "chromosome 14 open reading frame 44|family with sequence similarity 161, member B" 2002-11-27 2008-06-05 2015-11-18 2016-10-05 145483 ENSG00000156050 OTTHUMG00000171259 uc001xpd.4 AA356453 NM_152445 CCDS9822 Q96MY7 MGI:2443027 RGD:1309058 FAM161B +HGNC:17865 FAM162A family with sequence similarity 162 member A protein-coding gene gene with protein product Approved 3q21.1 03q21.1 E2IG5 C3orf28 "chromosome 3 open reading frame 28|family with sequence similarity 162, member A" 2005-12-20 2008-06-05 2015-11-18 2016-09-30 26355 ENSG00000114023 OTTHUMG00000159494 uc003eez.4 AF191020 NM_014367 CCDS43139 Q96A26 11085516 MGI:1917436 RGD:1590883 FAM162A 608017 +HGNC:21549 FAM162B family with sequence similarity 162 member B protein-coding gene gene with protein product Approved 6q22.1 06q22.1 bA86F4.2 C6orf189 "chromosome 6 open reading frame 189|family with sequence similarity 162, member B" 2003-06-24 2008-06-05 2015-11-18 2016-10-05 221303 ENSG00000183807 OTTHUMG00000015446 uc003pxi.2 BC038997 XM_927381 CCDS43497 Q5T6X4 MGI:1924546 FAM162B +HGNC:28274 FAM163A family with sequence similarity 163 member A protein-coding gene gene with protein product Approved 1q25.2 01q25.2 MGC16664 C1orf76 "chromosome 1 open reading frame 76|family with sequence similarity 163, member A" 2005-05-19 2008-06-05 2015-11-18 2016-09-30 148753 ENSG00000143340 OTTHUMG00000035262 uc001gnj.3 BC009382 NM_173509 CCDS1333 Q96GL9 12477932 MGI:3618859 RGD:1565760 FAM163A 611727 +HGNC:33277 FAM163B family with sequence similarity 163 member B protein-coding gene gene with protein product Approved 9q34.2 09q34.2 C9orf166 "chromosome 9 open reading frame 166|family with sequence similarity 163, member B" 2007-01-29 2008-06-05 2015-11-18 2016-09-30 642968 ENSG00000196990 OTTHUMG00000159557 uc064wvy.1 BX629352 NM_001080515 CCDS35171 P0C2L3 MGI:1926106 RGD:1597714 FAM163B +HGNC:33818 FAM166A family with sequence similarity 166 member A protein-coding gene gene with protein product Approved 9q34.3 09q34.3 family with sequence similarity 166, member A 2008-06-10 2015-11-18 2016-09-30 401565 ENSG00000188163 OTTHUMG00000159545 uc004cmi.3 BC132916 NM_001001710 CCDS35186 Q6J272 MGI:3605773 RGD:1562762 FAM166A +HGNC:34242 FAM166B family with sequence similarity 166 member B protein-coding gene gene with protein product Approved 9p13.3 09p13.3 family with sequence similarity 166, member B 2008-06-10 2015-11-18 2016-09-30 730112 ENSG00000215187 OTTHUMG00000019858 uc010mkr.4 BC129999 NM_001099951 "CCDS47963|CCDS56572" A8MTA8 MGI:2445194 RGD:2318060 FAM166B +HGNC:15549 FAM167A family with sequence similarity 167 member A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 C8orf13 "chromosome 8 open reading frame 13|family with sequence similarity 167, member A" 2001-04-25 2008-06-11 2015-11-18 2016-10-05 83648 ENSG00000154319 OTTHUMG00000129361 uc003wtw.3 XM_011543838 CCDS5981 Q96KS9 MGI:3606565 RGD:1561302 FAM167A 610085 +HGNC:15548 FAM167A-AS1 FAM167A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 C8orf12 chromosome 8 open reading frame 12 2001-04-25 2014-10-01 2014-10-01 2014-10-01 83656 ENSG00000184608 OTTHUMG00000165366 AJ301563 NR_026814 Q96KT0 +HGNC:28133 FAM167B family with sequence similarity 167 member B protein-coding gene gene with protein product Approved 1p35.2 01p35.2 MGC10820 C1orf90 "chromosome 1 open reading frame 90|family with sequence similarity 167, member B" 2005-05-27 2008-06-11 2015-11-18 2016-10-05 84734 ENSG00000183615 OTTHUMG00000007462 uc001buw.4 BC004269 NM_032648 CCDS358 Q9BTA0 12477932 MGI:2668032 RGD:1584589 FAM167B +HGNC:28999 FAM168A family with sequence similarity 168 member A protein-coding gene gene with protein product Approved 11q13.4 11q13.4 TCRP1 tongue cancer chemotherapy resistance-associated protein 1 KIAA0280 "KIAA0280|family with sequence similarity 168, member A" 2006-02-03 2008-06-11 2015-11-18 2016-09-30 23201 ENSG00000054965 OTTHUMG00000167995 uc001oty.3 BC014932 NM_015159 "CCDS41689|CCDS66165|CCDS73346" Q92567 MGI:2442372 RGD:1308929 FAM168A 616316 +HGNC:27016 FAM168B family with sequence similarity 168 member B protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "KIAA0280L|MANI" myelin associated neurite outgrowth inhibitor family with sequence similarity 168, member B 2008-06-11 2015-11-18 2016-09-30 130074 ENSG00000152102 OTTHUMG00000153473 uc061nwc.1 NM_001009993 CCDS42755 A1KXE4 20716133 MGI:2448487 RGD:1583985 FAM168B +HGNC:29138 FAM169A family with sequence similarity 169 member A protein-coding gene gene with protein product Approved 5q13.3 05q13.3 KIAA0888 family with sequence similarity 169, member A 2008-06-11 2015-11-18 2016-09-30 26049 ENSG00000198780 OTTHUMG00000162930 uc003kdm.4 XM_005248480 CCDS43330 Q9Y6X4 10048485 MGI:2444268 RGD:1590893 FAM169A 615769 +HGNC:26835 FAM169B family with sequence similarity 169 member B protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "FLJ39743|KIAA0888L" family with sequence similarity 169, member B 2008-06-11 2015-11-18 2016-09-30 283777 ENSG00000185087 OTTHUMG00000171863 uc002buk.1 NM_182562 CCDS45360 Q8N8A8 MGI:3644026 RGD:1585883 FAM169B +HGNC:27963 FAM170A family with sequence similarity 170 member A protein-coding gene gene with protein product Approved 5q23.1 05q23.1 family with sequence similarity 170, member A 2008-06-12 2015-11-18 2016-09-30 340069 ENSG00000164334 OTTHUMG00000162946 uc003ksn.4 AF427126 NM_182761 "CCDS43353|CCDS54889" A1A519 12477932 MGI:2684939 RGD:1565393 FAM170A +HGNC:19736 FAM170B family with sequence similarity 170 member B protein-coding gene gene with protein product Approved 10q11.23 10q11.23 Em:AC084727.4 C10orf73 "chromosome 10 open reading frame 73|family with sequence similarity 170, member B" 2004-02-05 2008-06-12 2015-11-18 2016-09-30 170370 ENSG00000172538 OTTHUMG00000018187 uc001jhj.4 XM_096317 CCDS53536 A6NMN3 MGI:2145650 RGD:2318714 FAM170B +HGNC:45006 FAM170B-AS1 FAM170B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q11.23 10q11.23 2013-01-07 2013-01-07 100506733 ENSG00000234736 OTTHUMG00000018186 uc001jhi.2 NR_038973 +HGNC:23522 FAM171A1 family with sequence similarity 171 member A1 protein-coding gene gene with protein product Approved 10p13 10p13 FLJ12884 C10orf38 "chromosome 10 open reading frame 38|family with sequence similarity 171, member A1" 2004-05-27 2008-06-16 2015-11-18 2016-09-30 221061 ENSG00000148468 OTTHUMG00000017732 uc001iob.4 AK022946 XM_167709 CCDS31154 Q5VUB5 MGI:2442917 RGD:1594172 FAM171A1 +HGNC:30480 FAM171A2 family with sequence similarity 171 member A2 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 MGC34829 family with sequence similarity 171, member A2 2008-06-16 2015-11-18 2016-09-30 284069 ENSG00000161682 OTTHUMG00000132421 uc002igs.3 NM_198475 CCDS45701 A8MVW0 12477932 MGI:2448496 RGD:1307966 FAM171A2 +HGNC:29412 FAM171B family with sequence similarity 171 member B protein-coding gene gene with protein product Approved 2q32.1 02q32.1 FLJ34104 KIAA1946 "KIAA1946|family with sequence similarity 171, member B" 2004-04-21 2008-06-16 2015-11-18 2016-10-05 165215 ENSG00000144369 OTTHUMG00000154278 uc002upt.4 AF361495 NM_177454 CCDS33347 Q6P995 11853319 MGI:2444579 RGD:1562526 FAM171B +HGNC:25365 FAM172A family with sequence similarity 172 member A protein-coding gene gene with protein product Approved 5q15 05q15 DKFZP564D172 C5orf21 "chromosome 5 open reading frame 21|family with sequence similarity 172, member A" 2006-02-07 2008-06-16 2015-11-18 2016-09-30 83989 ENSG00000113391 OTTHUMG00000131329 uc010jbd.4 NM_032042 "CCDS4069|CCDS54879|CCDS54880" Q8WUF8 11230166 MGI:1915925 RGD:1305526 FAM172A +HGNC:34336 FAM172BP family with sequence similarity 172 member B, pseudogene pseudogene pseudogene Approved 3q12.3 03q12.3 "LOC131909|FLJ45679" similar to CG10038-PB, isoform B FAM172B "family with sequence similarity 172, member B pseudogene|family with sequence similarity 172, member B, pseudogene" 2008-06-16 2011-04-15 2015-11-18 2016-09-30 131909 ENSG00000175841 OTTHUMG00000159125 XR_041878 A6NC97 +HGNC:14152 FAM173A family with sequence similarity 173 member A protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC2494 C16orf24 "chromosome 16 open reading frame 24|family with sequence similarity 173, member A" 2000-12-21 2008-06-19 2015-11-18 2016-09-30 65990 ENSG00000103254 OTTHUMG00000121177 uc002cje.5 BC002624 NM_023933 "CCDS10423|CCDS59254" Q9BQD7 MGI:2384888 RGD:1306126 FAM173A +HGNC:27029 FAM173B family with sequence similarity 173 member B protein-coding gene gene with protein product Approved 5p15.2 05p15.2 family with sequence similarity 173, member B 2008-07-02 2015-11-18 2016-09-30 134145 ENSG00000150756 OTTHUMG00000161771 uc003jeo.4 NM_199133 "CCDS43301|CCDS58942" Q6P4H8 12477932 MGI:1915323 RGD:1560629 FAM173B +HGNC:24943 FAM174A family with sequence similarity 174 member A protein-coding gene gene with protein product Approved 5q21.1 05q21.1 UNQ1912 TMEM157 "transmembrane protein 157|family with sequence similarity 174, member A" 2006-05-23 2008-06-19 2015-11-18 2016-09-30 345757 ENSG00000174132 OTTHUMG00000128726 uc003knj.2 AY359108 NM_198507 CCDS4090 Q8TBP5 12975309 MGI:1914948 RGD:1309973 FAM174A +HGNC:34339 FAM174B family with sequence similarity 174 member B protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "LOC400451|MGC102891" family with sequence similarity 174, member B 2008-06-19 2015-11-18 2016-09-30 400451 ENSG00000185442 OTTHUMG00000171744 uc059nlk.1 NM_207446 CCDS45355 Q3ZCQ3 MGI:3698178 RGD:1596692 FAM174B +HGNC:25829 FAM175A family with sequence similarity 175 member A protein-coding gene gene with protein product Approved 4q21.23 04q21.23 "FLJ13614|ABRA1|ABRAXAS" Abraxas protein CCDC98 "coiled-coil domain containing 98|family with sequence similarity 175, member A" BRCA1 A complex 1328 2006-04-03 2008-07-02 2015-11-18 2016-09-30 84142 ENSG00000163322 OTTHUMG00000130429 uc003hou.3 AK023676 NM_139076 CCDS3605 Q6UWZ7 "12975309|17525340" MGI:1917931 RGD:1305287 FAM175A 611143 +HGNC:28975 FAM175B family with sequence similarity 175 member B protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "Em:AC068896.4|ABRO1" Abraxas brother KIAA0157 "KIAA0157|family with sequence similarity 175, member B" 2004-03-16 2008-07-02 2015-11-18 2016-10-05 23172 ENSG00000165660 OTTHUMG00000019218 uc001lib.4 D63877 NM_032182 CCDS31308 Q15018 8590280 MGI:1926116 RGD:1308918 FAM175B 611144 +HGNC:19829 FAM177A1 family with sequence similarity 177 member A1 protein-coding gene gene with protein product Approved 14q13.2 14q13.2 C14orf24 "chromosome 14 open reading frame 24|family with sequence similarity 177, member A1" 2003-01-13 2008-07-09 2015-11-18 2016-09-30 283635 ENSG00000151327 OTTHUMG00000140217 uc001wsq.4 BG722411 NM_173607 "CCDS9653|CCDS41944" Q8N128 MGI:1920635 RGD:2323636 FAM177A1 +HGNC:34441 FAM177A1P1 family with sequence similarity 177 member A1 pseudogene 1 pseudogene pseudogene Approved 4q23 04q23 FAM177A2 "family with sequence similarity 177, member A2|family with sequence similarity 177, member A1 pseudogene 1" 2008-07-09 2012-04-19 2015-11-18 2016-09-30 728710 ENSG00000214886 OTTHUMG00000161228 NG_011746 +HGNC:34395 FAM177B family with sequence similarity 177 member B protein-coding gene gene with protein product Approved 1q41 01q41 "RP11-452F19.2|FLJ43505" family with sequence similarity 177, member B 2008-07-09 2015-11-18 2016-09-30 400823 ENSG00000197520 OTTHUMG00000037766 uc057pqu.1 AK125494 NM_207468 CCDS1535 A6PVY3 RGD:7728997 FAM177B +HGNC:28036 FAM178B family with sequence similarity 178 member B protein-coding gene gene with protein product Approved 2q11.2 02q11.2 LOC51252 family with sequence similarity 178, member B 2008-07-18 2015-11-18 2016-09-30 51252 ENSG00000168754 OTTHUMG00000155257 uc002sxj.4 "AF151068|BC039488" NM_016490 "CCDS33252|CCDS46366" Q8IXR5 11042152 MGI:3026913 RGD:1564591 FAM178B +HGNC:33715 FAM179A family with sequence similarity 179 member A protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "FLJ43249|LOC165186" family with sequence similarity 179, member A 2008-07-21 2015-11-18 2016-09-30 165186 ENSG00000189350 OTTHUMG00000128432 uc010ezl.4 "AK125239|AK125744" NM_199280 CCDS1769 Q6ZUX3 16344560 MGI:2443498 RGD:1310677 FAM179A +HGNC:19959 FAM179B family with sequence similarity 179 member B protein-coding gene gene with protein product Approved 14q21.2 14q21.2 KIAA0423 "KIAA0423|family with sequence similarity 179, member B" 2003-11-21 2008-07-21 2015-11-18 2016-10-05 23116 ENSG00000198718 OTTHUMG00000140264 uc001wvv.4 AB007883 XM_113781 "CCDS9681|CCDS76676" Q9Y4F4 MGI:2684313 RGD:1310474 FAM179B +HGNC:33773 FAM180A family with sequence similarity 180 member A protein-coding gene gene with protein product Approved 7q33 07q33 "HWKM1940|UNQ1940" family with sequence similarity 180, member A 2008-07-21 2015-11-18 2016-09-30 389558 ENSG00000189320 OTTHUMG00000155537 uc003vtd.4 "AC091736|AK290250|AK310180|AY358803" NM_205855 CCDS5841 Q6UWF9 "12975309|12690205" MGI:3039626 RGD:1308013 FAM180A +HGNC:34451 FAM180B family with sequence similarity 180 member B protein-coding gene gene with protein product Approved 11p11.2 11p11.2 LOC399888 hypothetical gene supported by BC065704 family with sequence similarity 180, member B 2008-07-21 2015-11-18 2016-09-30 399888 ENSG00000196666 OTTHUMG00000167871 uc058bgt.1 BC065704 XM_941808 Q6P0A1 12477932 RGD:11469551 FAM180B +HGNC:20491 FAM181A family with sequence similarity 181 member A protein-coding gene gene with protein product Approved 14q32.12 14q32.12 C14orf152 "chromosome 14 open reading frame 152|family with sequence similarity 181, member A" 2004-06-11 2008-07-22 2015-11-18 2016-09-30 90050 ENSG00000140067 OTTHUMG00000171297 uc021say.2 BC009073 NM_138344 "CCDS9914|CCDS55939" Q8N9Y4 MGI:3647570 RGD:6504274 FAM181A +HGNC:20133 FAM181A-AS1 FAM181A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q32.12 14q32.12 C14orf86 "chromosome 14 open reading frame 86|FAM181A antisense RNA 1 (non-protein coding)" 2003-01-13 2011-12-07 2012-08-15 2012-10-12 283592 ENSG00000258584 OTTHUMG00000171296 uc001yby.2 NR_027004 +HGNC:28512 FAM181B family with sequence similarity 181 member B protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "LOC220382|MGC33846" family with sequence similarity 181, member B 2008-07-22 2015-11-18 2016-09-30 220382 ENSG00000182103 OTTHUMG00000166869 uc001ozp.4 "AK095054|BC039262" NM_175885 CCDS31648 A6NEQ2 12477932 MGI:1930951 RGD:1564695 FAM181B +HGNC:16222 FAM182A family with sequence similarity 182 member A other unknown Approved 20p11.1 20p11.1 "bB329D4.1|C20orf91A" C20orf91 "chromosome 20 open reading frame 91|family with sequence similarity 182, member A" 2001-07-17 2008-08-05 2015-11-18 2016-10-05 284800 ENSG00000125804 OTTHUMG00000032144 uc010gdq.4 AL391119 NR_026713 Q5T1J6 FAM182A +HGNC:34503 FAM182B family with sequence similarity 182 member B other unknown Approved 20p11.1 20p11.1 family with sequence similarity 182, member B 2008-08-05 2015-11-18 2016-09-30 728882 ENSG00000175170 OTTHUMG00000032136 uc002wve.4 NR_026714 Q5T319 FAM182B +HGNC:34347 FAM183A family with sequence similarity 183 member A protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "LOC440585|hCG23177" family with sequence similarity 183, member A 2008-08-11 2015-11-18 2016-09-30 440585 ENSG00000186973 OTTHUMG00000007286 uc009vwo.4 "AI192630|AI375550|AL139138" NM_001101376 CCDS44126 A6NL82 11181995 MGI:1922679 RGD:1561932 FAM183A +HGNC:34511 FAM183BP family with sequence similarity 183 member B, pseudogene pseudogene pseudogene Approved 7p14.1 07p14.1 LOC340286 FAM183B "family with sequence similarity 183, member B|family with sequence similarity 183, member B, pseudogene" 2008-08-11 2015-08-27 2015-11-18 2016-09-30 340286 ENSG00000164556 OTTHUMG00000153653 "AK124132|BC045803" NR_028347 Q6ZVS7 +HGNC:27827 FAM183CP family with sequence similarity 183 member C, pseudogene pseudogene pseudogene Approved 8p12 08p12 family with sequence similarity 183, member C, pseudogene 2013-06-07 2015-11-18 2016-09-30 286135 ENSG00000253279 OTTHUMG00000163817 NR_024473 12477932 PGOHUM00000303492 +HGNC:51331 FAM183DP family with sequence similarity 183 member D, pseudogene pseudogene pseudogene Approved 2q12.1 02q12.1 family with sequence similarity 183, member D, pseudogene 2014-10-06 2015-11-18 2016-09-30 101060105 ENSG00000205716 OTTHUMG00000153041 PGOHUM00000298046 +HGNC:51332 FAM183EP family with sequence similarity 183 member E, pseudogene pseudogene pseudogene Approved 1q41 01q41 family with sequence similarity 183, member E, pseudogene 2014-10-06 2015-11-18 2016-09-30 107403081 NG_046798 PGOHUM00000296056 +HGNC:20991 FAM184A family with sequence similarity 184 member A protein-coding gene gene with protein product Approved 6q22.31 06q22.31 FLJ13942 C6orf60 "chromosome 6 open reading frame 60|family with sequence similarity 184, member A" 2003-04-30 2008-08-14 2015-11-18 2016-09-30 79632 ENSG00000111879 OTTHUMG00000015471 uc003pyj.5 BC009055 NM_024581 "CCDS43499|CCDS43500|CCDS75508" Q8NB25 11230166 MGI:1923156 RGD:1311294 FAM184A +HGNC:29235 FAM184B family with sequence similarity 184 member B protein-coding gene gene with protein product Approved 4p15.32-p15.31 04p15.32-p15.31 KIAA1276 family with sequence similarity 184, member B 2008-08-14 2015-11-18 2016-10-11 27146 ENSG00000047662 OTTHUMG00000160287 uc003gpm.5 NM_015688 CCDS47033 Q9ULE4 10574462 MGI:2442958 RGD:1564950 FAM184B +HGNC:22412 FAM185A family with sequence similarity 185 member A protein-coding gene gene with protein product Approved 7q22.1 07q22.1 MGC35361 family with sequence similarity 185, member A 2008-09-17 2015-11-18 2016-09-30 222234 ENSG00000222011 OTTHUMG00000154140 uc011klg.3 BC029175 NM_001145268 "CCDS47676|CCDS47677" Q8N0U4 MGI:2140983 RGD:1562135 FAM185A +HGNC:21813 FAM185BP family with sequence similarity 185 member B, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 FAM185B family with sequence similarity 185, member B pseudogene 2008-09-17 2011-05-04 2015-11-18 2016-09-30 641808 ENSG00000214439 OTTHUMG00000154141 XM_001717516 PGOHUM00000232895 +HGNC:26980 FAM186A family with sequence similarity 186 member A protein-coding gene gene with protein product Approved 12q13.12 12q13.12 LOC121006 family with sequence similarity 186, member A 2008-09-17 2015-11-18 2016-10-05 121006 ENSG00000185958 OTTHUMG00000167889 uc001rwl.3 XM_001718353 CCDS44878 A6NE01 MGI:2685766 RGD:2323958 FAM186A +HGNC:25296 FAM186B family with sequence similarity 186 member B protein-coding gene gene with protein product Approved 12q13.12 12q13.12 DKFZP434J0113 C12orf25 "chromosome 12 open reading frame 25|family with sequence similarity 186, member B" 2006-01-10 2008-09-17 2015-11-18 2016-09-30 84070 ENSG00000135436 OTTHUMG00000167427 uc001ruo.4 AL136748 NM_032130 CCDS8788 Q8IYM0 11230166 MGI:3647604 RGD:1559522 FAM186B +HGNC:35153 FAM187A family with sequence similarity 187 member A protein-coding gene gene with protein product Approved 17q21.31 17q21.31 family with sequence similarity 187, member A V-set domain containing 590 2008-10-16 2015-11-18 2016-09-30 100528020 ENSG00000214447 OTTHUMG00000154266 uc002iho.4 A6NFU0 MGI:1914034 RGD:1307851 FAM187A +HGNC:26366 FAM187B family with sequence similarity 187 member B protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ25660 TMEM162 "transmembrane protein 162|family with sequence similarity 187, member B" 2006-06-21 2008-10-16 2015-11-18 2016-09-30 148109 ENSG00000177558 OTTHUMG00000164450 uc002nyk.2 AK098526 NM_152481 CCDS12448 Q17R55 MGI:1923665 RGD:1597448 FAM187B +HGNC:49213 FAM187B2P family with sequence similarity 187 member B2, pseudogene pseudogene pseudogene Approved 19q13.12 19q13.12 family with sequence similarity 187, member B2, pseudogene 2013-10-09 2015-11-18 2016-09-30 100421621 ENSG00000262497 OTTHUMG00000177833 NG_024180 PGOHUM00000234290 +HGNC:23578 FAM188A family with sequence similarity 188 member A protein-coding gene gene with protein product Approved 10p13 10p13 "FLJ13397|CARP|my042|DERP5" "caspase recruitment domain containing pro-apoptotic protein|CARD-containing protein" C10orf97 "chromosome 10 open reading frame 97|family with sequence similarity 188, member A" 2004-04-15 2009-07-14 2015-11-18 2016-09-30 80013 ENSG00000148481 OTTHUMG00000017734 uc001iod.2 AK023459 NM_024948 CCDS7110 Q9H8M7 "12054670|17652099|27292798" MGI:1914210 RGD:1309605 FAM188A 611649 +HGNC:21916 FAM188B family with sequence similarity 188 member B protein-coding gene gene with protein product Approved 7p14.3 07p14.3 FLJ22374 C7orf67 "chromosome 7 open reading frame 67|family with sequence similarity 188, member B" 2009-03-10 2009-07-14 2015-11-18 2016-09-30 84182 ENSG00000106125 OTTHUMG00000152800 uc003tbt.3 AK026027 NM_032222 CCDS43565 Q4G0A6 MGI:3583959 RGD:1562590 FAM188B +HGNC:35475 FAM188B2 family with sequence similarity 188 member B2 other unknown Approved 3q25.1 03q25.1 C3orf76 "chromosome 3 open reading frame 76|family with sequence similarity 188, member B2" 2009-03-10 2009-07-14 2015-11-18 2016-09-30 646951 ENSG00000214237 OTTHUMG00000159843 XM_001717355 A8MYZ0 RGD:11362385 FAM188B2 +HGNC:29075 FAM189A1 family with sequence similarity 189 member A1 protein-coding gene gene with protein product Approved 15q13.1 15q13.1 "KIAA0574|TMEM228" transmembrane protein 228 family with sequence similarity 189, member A1 2009-07-09 2015-11-18 2016-09-30 23359 ENSG00000104059 OTTHUMG00000172185 uc010azk.2 NM_015307 CCDS45198 O60320 9628581 MGI:1917888 RGD:1592985 FAM189A1 +HGNC:24820 FAM189A2 family with sequence similarity 189 member A2 protein-coding gene gene with protein product Approved 9q21.12 09q21.12 X123 C9orf61 "chromosome 9 open reading frame 61|family with sequence similarity 189, member A2" 2004-01-06 2009-07-09 2015-11-18 2016-10-05 9413 ENSG00000135063 OTTHUMG00000019979 uc010mon.1 L27479 NM_004816 CCDS6629 Q15884 7951235 MGI:2685813 RGD:1307524 FAM189A2 607710 +HGNC:1233 FAM189B family with sequence similarity 189 member B protein-coding gene gene with protein product Approved 1q22 01q22 cote1 C1orf2 "chromosome 1 open reading frame 2|family with sequence similarity 189, member B" 1998-10-14 2009-07-09 2015-11-18 2016-10-05 10712 ENSG00000160767 OTTHUMG00000035844 uc001fjm.4 AF070550 NM_006589 "CCDS1103|CCDS1104|CCDS58035" P81408 9331372 MGI:1915771 RGD:1306107 FAM189B +HGNC:29856 FAM192A family with sequence similarity 192 member A protein-coding gene gene with protein product Approved 16q13 16q13 NIP30 NEFA interacting nuclear protein NIP30 C16orf94 "chromosome 16 open reading frame 94|family with sequence similarity 192, member A" 2009-07-30 2009-08-19 2015-11-18 2016-09-30 80011 ENSG00000172775 OTTHUMG00000176660 uc021tiy.1 NM_024946 CCDS42168 Q9GZU8 12477932 MGI:1919637 RGD:1307433 FAM192A +HGNC:37194 FAM192BP family with sequence similarity 192 member B, pseudogene pseudogene pseudogene Approved 4q31.3 04q31.3 rcNIP30 FAM192B "family with sequence similarity 192, member B pseudogene|family with sequence similarity 192, member B, pseudogene" 2009-08-19 2011-04-15 2015-11-18 2016-09-30 152667 NG_007351 16201836 +HGNC:16822 FAM193A family with sequence similarity 193 member A protein-coding gene gene with protein product Approved 4p16.3 04p16.3 RES4-22 C4orf8 "chromosome 4 open reading frame 8|family with sequence similarity 193, member A" 2003-01-08 2009-09-04 2015-11-18 2016-09-30 8603 ENSG00000125386 OTTHUMG00000160512 uc003gfd.4 AB000459 NM_003704 "CCDS33943|CCDS58874|CCDS58875|CCDS58876" P78312 9734812 MGI:2447768 RGD:1309634 FAM193A +HGNC:25524 FAM193B family with sequence similarity 193 member B protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "KIAA1931|FLJ10404|IRIZIO" family with sequence similarity 193, member B 2009-09-04 2015-11-18 2016-10-05 54540 ENSG00000146067 OTTHUMG00000163396 uc003mhu.4 NM_019057 CCDS54954 Q96PV7 "11572484|26188516|21177767" MGI:2385851 RGD:1562335 FAM193B 615813 +HGNC:33859 FAM196A family with sequence similarity 196 member A protein-coding gene gene with protein product Approved 10q26.2 10q26.2 FLJ45557 C10orf141 "chromosome 10 open reading frame 141|family with sequence similarity 196, member A" 2007-12-14 2009-09-11 2015-11-18 2016-09-30 642938 ENSG00000188916 OTTHUMG00000019248 uc001ljv.2 NM_001039762 CCDS31312 Q6ZSG2 MGI:3605068 RGD:2302685 FAM196A 617129 +HGNC:37271 FAM196B family with sequence similarity 196 member B protein-coding gene gene with protein product Approved 5q35.1 05q35.1 C5orf57 "chromosome 5 open reading frame 57|family with sequence similarity 196, member B" 2009-09-09 2009-09-11 2015-11-18 2016-09-30 100131897 ENSG00000204767 OTTHUMG00000163083 uc003mag.3 NM_001129891 CCDS47336 A6NMK8 MGI:3643491 RGD:2320105 FAM196B +HGNC:37464 FAM197Y1P family with sequence similarity 197 Y-linked member 1, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 FAM197Y1 family with sequence similarity 197, Y-linked, member 1 2009-10-16 2015-12-07 2015-12-04 2016-09-30 100289265 ENSG00000224336 OTTHUMG00000187490 +HGNC:18848 FAM197Y2P family with sequence similarity 197 Y-linked member 2, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 "CYorf16|FAM197Y2P|FAM197Y2" "chromosome Y open reading frame 16|family with sequence similarity 197, Y-linked, member 2|family with sequence similarity 197, Y-linked, member 2, pseudogene" 2002-07-22 2015-11-18 2015-11-19 2016-09-30 252946 ENSG00000234803 OTTHUMG00000041523 AF527835 NR_001553 +HGNC:37465 FAM197Y3 family with sequence similarity 197 Y-linked member 3 other unknown Approved Yp11.2 Yp11.2 family with sequence similarity 197, Y-linked, member 3 2009-10-16 2015-11-19 2016-09-30 100132506 ENSG00000230066 OTTHUMG00000041521 XM_001716449 +HGNC:37466 FAM197Y4P family with sequence similarity 197 Y-linked member 4, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 FAM197Y4 "family with sequence similarity 197, Y-linked, member 4|family with sequence similarity 197, Y-linked, member 4, pseudogene" 2009-10-16 2015-11-18 2015-11-19 2016-09-30 100289188 ENSG00000274196 OTTHUMG00000187486 XM_002344200 +HGNC:37467 FAM197Y5P family with sequence similarity 197 Y-linked member 5, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 FAM197Y5 "family with sequence similarity 197, Y-linked, member 5|family with sequence similarity 197, Y-linked, member 5, pseudogene" 2009-10-16 2015-11-18 2015-11-19 2016-09-30 100289150 ENSG00000225516 OTTHUMG00000187485 uc004frv.2 XM_002344199 +HGNC:37468 FAM197Y6 family with sequence similarity 197 Y-linked member 6 other unknown Approved Yp11.2 Yp11.2 family with sequence similarity 197, Y-linked, member 6 2009-10-16 2015-11-19 2016-09-30 100287859 ENSG00000237802 OTTHUMG00000041534 XM_002344442 PGOHUM00000233707 +HGNC:37469 FAM197Y7P family with sequence similarity 197 Y-linked member 7, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 FAM197Y7 "family with sequence similarity 197, Y-linked, member 7|family with sequence similarity 197, Y-linked, member 7, pseudogene" 2009-10-16 2015-11-18 2015-11-19 2016-09-30 100287826 ENSG00000228383 OTTHUMG00000041532 XM_002344441 +HGNC:37470 FAM197Y8 family with sequence similarity 197 Y-linked member 8 other unknown Approved Yp11.2 Yp11.2 family with sequence similarity 197, Y-linked, member 8 2009-10-16 2015-11-19 2016-09-30 100287798 ENSG00000225560 OTTHUMG00000187512 XM_002344440 +HGNC:37477 FAM197Y9 family with sequence similarity 197 Y-linked member 9 other unknown Approved Yp11.2 Yp11.2 family with sequence similarity 197, Y-linked, member 9 2009-10-22 2015-11-19 2016-09-30 100132932 ENSG00000234830 OTTHUMG00000040949 XM_001716169 +HGNC:37627 FAM197Y10 family with sequence similarity 197 Y-linked member 10 other unknown Approved Yq11.223 Yq11.223 family with sequence similarity 197, Y-linked, member 10 2009-11-25 2015-11-19 2016-09-30 100288465 XM_002343869 +HGNC:24485 FAM198A family with sequence similarity 198 member A protein-coding gene gene with protein product Approved 3p22.1 03p22.1 DKFZP434B172 C3orf41 "chromosome 3 open reading frame 41|family with sequence similarity 198, member A" 2006-01-08 2009-10-19 2015-11-18 2016-09-30 729085 ENSG00000144649 OTTHUMG00000156449 uc003cmp.6 AL117530 NM_001129908 CCDS46808 Q9UFP1 MGI:3041196 RGD:1305157 FAM198A +HGNC:25312 FAM198B family with sequence similarity 198 member B protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "FLJ38155|DKFZp434L142" C4orf18 "chromosome 4 open reading frame 18|family with sequence similarity 198, member B" 2006-02-13 2009-10-19 2015-11-18 2016-09-30 51313 ENSG00000164125 OTTHUMG00000161537 uc003ipr.5 "NM_001031700|NM_016613" "CCDS3798|CCDS34087" Q6UWH4 12975309 MGI:1915909 RGD:735075 FAM198B +HGNC:25195 FAM199X family with sequence similarity 199, X-linked protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 CXorf39 chromosome X open reading frame 39 2004-09-06 2010-02-11 2010-02-11 2016-10-05 139231 ENSG00000123575 OTTHUMG00000022126 uc004elw.4 BC016683 NM_207318 CCDS35364 Q6PEV8 MGI:2384304 RGD:1591830 FAM199X +HGNC:23951 FAM199YP family with sequence similarity 199, Y-linked, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 FAM199Y 2010-02-11 2016-09-30 360029 NG_002952 12815422 +HGNC:25401 FAM200A family with sequence similarity 200 member A protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "FLJ36794|DKFZp727G131" C7orf38 "chromosome 7 open reading frame 38|family with sequence similarity 200, member A" 2006-03-20 2010-02-22 2015-11-18 2016-09-30 221786 ENSG00000221909 OTTHUMG00000156723 uc003ura.4 NM_145111 CCDS5668 Q8TCP9 10607616 FAM200A +HGNC:27740 FAM200B family with sequence similarity 200 member B protein-coding gene gene with protein product Approved 4p15.32 04p15.32 C4orf53 chromosome 4 open reading frame 53 family with sequence similarity 200, member B 2010-02-22 2015-11-18 2016-09-30 285550 ENSG00000237765 OTTHUMG00000160279 uc003gof.5 BC048993 NM_001145191 CCDS47028 P0CF97 FAM200B +HGNC:27239 FAM201A family with sequence similarity 201 member A non-coding RNA RNA, long non-coding Approved 9p13.1 09p13.1 C9orf122 "chromosome 9 open reading frame 122|family with sequence similarity 201, member A" 2004-04-15 2010-07-02 2015-11-18 2016-10-05 158228 ENSG00000204860 OTTHUMG00000019948 uc064tef.1 BC041970 NR_027294 Q5SY85 12477932 FAM201A +HGNC:27933 FAM201B family with sequence similarity 201 member B other unknown Approved 2q21.2 02q21.2 family with sequence similarity 201, member B 2010-07-02 2015-11-18 2016-09-30 339742 ENSG00000230992 OTTHUMG00000153605 BC045732 NR_135203 12477932 +HGNC:37996 FAM201CP family with sequence similarity 201 member C, pseudogene pseudogene pseudogene Approved Yq11.1 Yq11.1 FAM201C "family with sequence similarity 201, member C|family with sequence similarity 201, member C, pseudogene" 2010-07-02 2015-02-27 2015-11-18 2016-09-30 100132230 +HGNC:38095 FAM202A entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-06 +HGNC:38000 FAM202B entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-06 +HGNC:38532 FAM202C entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-06 +HGNC:25794 FAM204A family with sequence similarity 204 member A protein-coding gene gene with protein product Approved 10q26.11 10q26.11 "FLJ13188|bA319I23.1" C10orf84 "chromosome 10 open reading frame 84|family with sequence similarity 204, member A" 2004-03-16 2011-06-01 2015-11-18 2016-10-05 63877 ENSG00000165669 OTTHUMG00000019131 uc001ldo.3 AK023250 NM_022063 CCDS7605 Q9H8W3 12477932 MGI:1289174 RGD:1305500 FAM204A +HGNC:42011 FAM204BP family with sequence similarity 204 member B, pseudogene pseudogene pseudogene Approved 1q31.3 01q31.3 family with sequence similarity 204, member B, pseudogene 2011-06-01 2015-11-18 2016-09-30 100420875 ENSG00000233040 OTTHUMG00000035650 NG_027030 PGOHUM00000244384 +HGNC:42012 FAM204CP family with sequence similarity 204 member C, pseudogene pseudogene pseudogene Approved 13q22.2 13q22.2 family with sequence similarity 204, member C, pseudogene 2011-06-01 2015-11-18 2016-09-30 100420916 ENSG00000230902 OTTHUMG00000017092 NG_024869 PGOHUM00000248441 +HGNC:42013 FAM204DP family with sequence similarity 204 member D, pseudogene pseudogene pseudogene Approved 14q24.3 14q24.3 family with sequence similarity 204, member D, pseudogene 2011-06-01 2015-11-18 2016-09-30 100420963 NG_027293 PGOHUM00000257966 +HGNC:41911 FAM205A family with sequence similarity 205 member A protein-coding gene gene with protein product Approved 9p13.3 09p13.3 C9orf144B family with sequence similarity 205, member A 2011-08-15 2015-11-18 2016-09-30 259308 ENSG00000205108 OTTHUMG00000000448 uc011lor.3 NM_001141917 CCDS55305 Q6ZU69 "MGI:3651059|MGI:3701946|MGI:5434294|MGI:5434953" RGD:2320471 FAM205A +HGNC:24504 FAM205BP family with sequence similarity 205 member B, pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 "DKFZp434J193|C9orf144A" "C9orf144|FAM205B" "chromosome 9 open reading frame 144|family with sequence similarity 205, member B|family with sequence similarity 205, member B, pseudogene" 2006-06-30 2014-10-06 2015-11-18 2016-09-30 389715 ENSG00000257198 OTTHUMG00000019839 NR_024481 Q63HN1 +HGNC:42673 FAM205C family with sequence similarity 205 member C protein-coding gene gene with protein product Approved 9p13.3 09p13.3 FAM205CP "family with sequence similarity 205, member C, pseudogene|family with sequence similarity 205, member C" 2011-08-15 2015-06-02 2015-11-18 2016-09-30 100129969 ENSG00000187791 OTTHUMG00000019841 NM_001309426 "CCDS83358|CCDS83359" A6NFA0 MGI:2679716 RGD:1561387 PGOHUM00000250492 +HGNC:1364 FAM206A family with sequence similarity 206 member A protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "CG-8|FLJ20457|Simiate" C9orf6 "chromosome 9 open reading frame 6|family with sequence similarity 206, member A" 1999-06-02 2011-08-15 2015-11-18 2016-10-05 54942 ENSG00000119328 OTTHUMG00000020467 uc004bdn.4 BC015795 NM_017832 CCDS6774 Q9NX38 MGI:2677850 RGD:1594560 +HGNC:39851 FAM206BP family with sequence similarity 206 member B, pseudogene pseudogene pseudogene Approved 13q14.13 13q14.13 family with sequence similarity 206, member B, pseudogene 2011-08-15 2015-11-18 2016-09-30 390403 ENSG00000251106 OTTHUMG00000016869 NG_011392 +HGNC:15811 FAM207A family with sequence similarity 207 member A protein-coding gene gene with protein product Approved 21q22.3 21q22.3 PRED56 C21orf70 "chromosome 21 open reading frame 70|family with sequence similarity 207, member A" 2001-06-14 2011-08-15 2015-11-18 2016-09-30 85395 ENSG00000160256 OTTHUMG00000090293 uc002zgl.4 NM_058190 "CCDS13718|CCDS82682" Q9NSI2 MGI:1916334 RGD:1311257 +HGNC:39715 FAM207BP family with sequence similarity 207 member B, pseudogene pseudogene pseudogene Approved 13q11 13q11 family with sequence similarity 207, member B, pseudogene 2011-08-15 2015-11-18 2016-09-30 729535 ENSG00000228797 OTTHUMG00000016463 NG_021965 PGOHUM00000248501 +HGNC:42676 FAM207CP family with sequence similarity 207 member C, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 "family with sequence similarity 207, member C|family with sequence similarity 207, member C, pseudogene" 2011-08-15 2015-11-18 2016-09-30 727987 ENSG00000232797 OTTHUMG00000074236 NG_021995 PGOHUM00000239135 +HGNC:30314 FAM208A family with sequence similarity 208 member A protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "se89-1|RAP140|KIAA1105" C3orf63 "chromosome 3 open reading frame 63|family with sequence similarity 208, member A" 2006-02-10 2011-09-14 2015-11-18 2016-09-30 23272 ENSG00000163946 OTTHUMG00000158827 uc003dic.5 AF180425 NM_015224 "CCDS2877|CCDS46853" Q9UK61 "10470851|11149944" MGI:1921694 RGD:1595469 FAM208A 616493 +HGNC:23484 FAM208B family with sequence similarity 208 member B protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "FLJ20360|bA318E3.2|KIAA2006" C10orf18 "chromosome 10 open reading frame 18|family with sequence similarity 208, member B" 2004-05-27 2011-09-14 2015-11-18 2016-09-30 54906 ENSG00000108021 OTTHUMG00000017605 uc001iij.3 BX649177 NM_017782 CCDS41485 Q5VWN6 12477932 MGI:2145274 RGD:1564456 +HGNC:16100 FAM209A family with sequence similarity 209 member A protein-coding gene gene with protein product Approved 20q13.31 20q13.31 dJ1153D9.3 C20orf106 "chromosome 20 open reading frame 106|family with sequence similarity 209, member A" 2001-07-17 2011-11-24 2015-11-18 2016-09-30 200232 ENSG00000124103 OTTHUMG00000032799 uc002xxx.4 AL109806 XR_001754199 CCDS33493 Q5JX71 MGI:1923676 +HGNC:16101 FAM209B family with sequence similarity 209 member B protein-coding gene gene with protein product Approved 20q13.31 20q13.31 dJ1153D9.4 C20orf107 "chromosome 20 open reading frame 107|family with sequence similarity 209, member B" 2001-07-17 2011-11-24 2015-11-18 2016-09-30 388799 ENSG00000213714 OTTHUMG00000032800 uc002xxz.5 AL109806 XM_017027849 CCDS33494 Q5JX69 MGI:1923676 RGD:1307805 +HGNC:28346 FAM210A family with sequence similarity 210 member A protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "MGC24180|HsT2329" C18orf19 "chromosome 18 open reading frame 19|family with sequence similarity 210, member A" 2004-05-05 2011-11-24 2015-11-18 2016-09-30 125228 ENSG00000177150 OTTHUMG00000131719 uc010dli.4 AK055618 NM_152352 CCDS11866 Q96ND0 14702039 MGI:1914000 RGD:1359600 +HGNC:16102 FAM210B family with sequence similarity 210 member B protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "dJ1167H4.1|DKFZP434A1114" hypothetical protein LOC116151 C20orf108 "chromosome 20 open reading frame 108|family with sequence similarity 210, member B" 2001-07-17 2011-11-24 2015-11-18 2016-09-30 116151 ENSG00000124098 OTTHUMG00000032793 uc002xxc.4 AL121914 NM_080821 CCDS13450 Q96KR6 11780052 MGI:1914267 RGD:1311378 +HGNC:44938 FAM210CP family with sequence similarity 210 member C, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 family with sequence similarity 210, member C, pseudogene 2012-12-19 2015-11-18 2016-09-30 100131328 ENSG00000213770 OTTHUMG00000017858 NG_022141 PGOHUM00000238380 +HGNC:32480 FAM212A family with sequence similarity 212 member A protein-coding gene gene with protein product Approved 3p21.31 03p21.31 C3orf54 "chromosome 3 open reading frame 54|family with sequence similarity 212, member A" 2006-02-01 2011-11-24 2015-11-18 2016-09-30 389119 ENSG00000185614 OTTHUMG00000158268 uc003cxq.1 BC012170 NM_203370 CCDS2804 Q96EL1 MGI:1915426 RGD:1560778 +HGNC:28045 FAM212B family with sequence similarity 212 member B protein-coding gene gene with protein product Approved 1p13.2 01p13.2 FLJ31105 C1orf183 "chromosome 1 open reading frame 183|family with sequence similarity 212, member B" 2005-08-02 2011-11-24 2015-11-18 2016-09-30 55924 ENSG00000197852 OTTHUMG00000011953 uc001ebo.2 AK055667 NM_019099 "CCDS841|CCDS44195" Q9NTI7 MGI:1923497 RGD:1306526 FAM212B +HGNC:49446 FAM212B-AS1 FAM212B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p13.2 01p13.2 2013-12-03 2013-12-03 100506343 ENSG00000227811 OTTHUMG00000011954 NR_038951 +HGNC:28651 FAM213A family with sequence similarity 213 member A protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "MGC4248|PAMM" peroxiredoxin-like 2 activated in M-CSF stimulated monocytes C10orf58 "chromosome 10 open reading frame 58|family with sequence similarity 213, member A" 2004-05-27 2011-12-08 2015-11-18 2016-09-30 84293 ENSG00000122378 OTTHUMG00000018614 uc001kcc.5 AF086462 XM_017016775 "CCDS7368|CCDS58089" Q9BRX8 "11483580|19951071" MGI:1917814 RGD:1309676 +HGNC:28390 FAM213B family with sequence similarity 213 member B protein-coding gene gene with protein product Approved 1p36.32 01p36.32 MGC26818 prostamide/prostaglandin F synthase C1orf93 "chromosome 1 open reading frame 93|family with sequence similarity 213, member B" 2005-05-31 2011-11-24 2015-11-18 2016-09-30 127281 ENSG00000157870 OTTHUMG00000000847 uc001aju.4 AK075273 NM_152371 "CCDS44|CCDS55564|CCDS72690|CCDS72691" Q8TBF2 18006499 MGI:1913719 RGD:1308251 FAM213B 1.11.1.20 +HGNC:25609 FAM214A family with sequence similarity 214 member A protein-coding gene gene with protein product Approved 15q21.2-q21.3 15q21.2-q21.3 FLJ10980 KIAA1370 "KIAA1370|family with sequence similarity 214, member A" 2005-10-24 2011-12-01 2015-11-18 2016-10-11 56204 ENSG00000047346 OTTHUMG00000172688 uc002acg.6 AB037791 NM_019600 "CCDS45263|CCDS66773" Q32MH5 10718198 MGI:2387648 RGD:1310552 +HGNC:25666 FAM214B family with sequence similarity 214 member B protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "FLJ11560|bA182N22.6" KIAA1539 "KIAA1539|family with sequence similarity 214, member B" 2004-02-13 2011-12-01 2015-11-18 2016-10-05 80256 ENSG00000005238 OTTHUMG00000019847 uc064swj.1 AB040972 NM_025182 CCDS6578 Q7L5A3 10819331 MGI:2441854 RGD:1311249 +HGNC:17505 FAM215A family with sequence similarity 215 member A (non-protein coding) non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 "APR-2|LINC00530" long intergenic non-protein coding RNA 530 C17orf88 "chromosome 17 open reading frame 88|family with sequence similarity 215, member A (non-protein coding)" 2007-07-19 2011-12-08 2015-11-18 2016-09-30 23591 ENSG00000267496 OTTHUMG00000181798 uc010wiq.3 AF143236 NR_026770 Q9Y5M1 10948432 FAM215A +HGNC:43639 FAM215B family with sequence similarity 215 member B (non-protein coding) non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 ARL17A-IT1 ARL17A intronic transcript 1 (non-protein coding) family with sequence similarity 215, member B (non-protein coding) 2011-12-08 2015-11-18 2016-09-30 644297 ENSG00000232300 OTTHUMG00000190258 uc060gld.1 BC044941 +HGNC:30180 FAM216A family with sequence similarity 216 member A protein-coding gene gene with protein product Approved 12q24.11 12q24.11 HSU79274 C12orf24 "chromosome 12 open reading frame 24|family with sequence similarity 216, member A" 2006-01-04 2012-02-07 2015-11-18 2016-09-30 29902 ENSG00000204856 OTTHUMG00000169526 uc001tqu.5 U79274 NM_013300 CCDS31899 Q8WUB2 MGI:1916198 RGD:1310861 +HGNC:26883 FAM216B family with sequence similarity 216 member B protein-coding gene gene with protein product Approved 13q14.11 13q14.11 FLJ40919 C13orf30 "chromosome 13 open reading frame 30|family with sequence similarity 216, member B" 2006-08-04 2012-02-07 2015-11-18 2016-09-30 144809 ENSG00000179813 OTTHUMG00000016809 uc010tfk.3 AK098238 NM_182508 CCDS9386 Q8N7L0 MGI:2145738 RGD:1560137 +HGNC:21362 FAM217A family with sequence similarity 217 member A protein-coding gene gene with protein product Approved 6p25.2 06p25.2 MGC43581 C6orf146 "chromosome 6 open reading frame 146|family with sequence similarity 217, member A" 2003-06-10 2012-02-07 2015-11-18 2016-10-05 222826 ENSG00000145975 OTTHUMG00000014159 uc003mvx.4 BC039349 NM_173563 CCDS4489 Q8IXS0 MGI:1919114 RGD:1566214 +HGNC:49613 FAM217AP1 family with sequence similarity 217 member A pseudogene 1 pseudogene pseudogene Approved 9p24.3 09p24.3 family with sequence similarity 217, member A pseudogene 1 2014-01-24 2015-11-18 2016-09-30 100133062 NG_021639 PGOHUM00000236352 +HGNC:16170 FAM217B family with sequence similarity 217 member B protein-coding gene gene with protein product Approved 20q13.33 20q13.33 dJ551D2.5 C20orf177 "chromosome 20 open reading frame 177|family with sequence similarity 217, member B" 2001-07-17 2012-02-07 2015-11-18 2016-09-30 63939 ENSG00000196227 OTTHUMG00000032873 uc002yba.4 AL109928 NM_022106 CCDS13484 Q9NTX9 MGI:1918782 RGD:1311952 +HGNC:26466 FAM218A family with sequence similarity 218 member A protein-coding gene gene with protein product Approved 4q32.3 04q32.3 FLJ31659 C4orf39 "chromosome 4 open reading frame 39|family with sequence similarity 218, member A" 2007-07-10 2012-03-01 2015-11-18 2016-09-30 152756 ENSG00000250486 OTTHUMG00000161252 uc003iqx.2 AK056221 NM_153027 CCDS3807 Q96MZ4 12477932 +HGNC:43779 FAM218BP family with sequence similarity 218 member B, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 family with sequence similarity 218, member B, pseudogene 2012-03-01 2015-11-18 2016-09-30 101059914 ENSG00000221891 OTTHUMG00000161269 NG_046631 PGOHUM00000245754 +HGNC:19920 FAM219A family with sequence similarity 219 member A protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "bA573M23.5|FLJ39031" C9orf25 "chromosome 9 open reading frame 25|family with sequence similarity 219, member A" 2002-12-03 2012-03-06 2015-11-18 2016-10-05 203259 ENSG00000164970 OTTHUMG00000019822 uc003zuj.4 AK096350 NM_001184940 "CCDS6556|CCDS55304" Q8IW50 "9110174|8619474" MGI:1919151 RGD:1588668 FAM219A +HGNC:24695 FAM219B family with sequence similarity 219 member B protein-coding gene gene with protein product Approved 15q24.1-q24.2 15q24.1-q24.2 FLJ00005 C15orf17 "chromosome 15 open reading frame 17|family with sequence similarity 219, member B" 2004-01-08 2012-03-06 2015-11-18 2016-10-11 57184 ENSG00000178761 OTTHUMG00000172715 uc002azh.4 AK000005 NM_020447 CCDS32295 Q5XKK7 11214971 MGI:1925573 RGD:1310727 FAM219B +HGNC:22422 FAM220A family with sequence similarity 220 member A protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "SIPAR|MGC12966" STAT3-interacting protein as a repressor C7orf70 "chromosome 7 open reading frame 70|family with sequence similarity 220, member A" 2009-04-20 2012-03-19 2015-11-18 2016-09-30 84792 ENSG00000178397 OTTHUMG00000122091 uc064bhn.1 BC006110 NM_001037163 CCDS34599 Q7Z4H9 MGI:1914488 RGD:1561923 616628 +HGNC:23678 FAM220BP family with sequence similarity 220 member B, pseudogene pseudogene pseudogene Approved 9p13.1 09p13.1 bA392E22.4 C9orf51 "chromosome 9 open reading frame 51|family with sequence similarity 220, member B, pseudogene" 2005-12-22 2012-03-19 2015-11-18 2016-10-05 647044 ENSG00000176007 OTTHUMG00000019947 AL390726 NG_041772 B1ANY3 +HGNC:43640 FAM220CP family with sequence similarity 220 member C, pseudogene pseudogene pseudogene Approved 9q22.33 09q22.33 family with sequence similarity 220, member C, pseudogene 2012-03-19 2015-11-18 2016-09-30 100507415 ENSG00000213612 OTTHUMG00000020316 PGOHUM00000263245 +HGNC:27977 FAM221A family with sequence similarity 221 member A protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "FLJ45875|MGC72075|DKFZp686F0810" C7orf46 "chromosome 7 open reading frame 46|family with sequence similarity 221, member A" 2006-08-25 2012-04-02 2015-11-18 2016-09-30 340277 ENSG00000188732 OTTHUMG00000128463 uc003swo.4 NM_199136 "CCDS5385|CCDS47561|CCDS47562|CCDS75570" A4D161 12477932 MGI:2442161 RGD:1563175 +HGNC:30762 FAM221B family with sequence similarity 221 member B protein-coding gene gene with protein product Approved 9p13.3 09p13.3 C9orf128 "chromosome 9 open reading frame 128|family with sequence similarity 221, member B" 2004-04-16 2012-04-02 2015-11-18 2016-09-30 392307 ENSG00000204930 OTTHUMG00000019880 uc010mlc.3 BX648702 NM_001012446 CCDS43799 A6H8Z2 MGI:2441678 RGD:1310425 FAM221B +HGNC:25915 FAM222A family with sequence similarity 222 member A protein-coding gene gene with protein product Approved 12q24.11 12q24.11 FLJ14721 C12orf34 "chromosome 12 open reading frame 34|family with sequence similarity 222, member A" 2006-01-20 2012-04-27 2015-11-18 2016-09-30 84915 ENSG00000139438 OTTHUMG00000169260 uc001tpd.3 AK027627 NM_032829 CCDS9133 Q5U5X8 12477932 MGI:3605543 RGD:1565883 +HGNC:28223 FAM222A-AS1 FAM222A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q24.11 12q24.11 FAM222A antisense RNA 1 (non-protein coding) 2012-04-27 2012-08-15 2012-10-12 84983 ENSG00000255650 OTTHUMG00000169261 uc031qjl.2 NR_026661 12477932 +HGNC:25563 FAM222B family with sequence similarity 222 member B protein-coding gene gene with protein product Approved 17q11.2 17q11.2 FLJ10700 C17orf63 "chromosome 17 open reading frame 63|family with sequence similarity 222, member B" 2005-12-16 2012-04-27 2015-11-18 2016-09-30 55731 ENSG00000173065 uc010way.3 AK001562 NM_018182 "CCDS45637|CCDS74022" Q8WU58 MGI:2384939 RGD:1566149 +HGNC:30612 FAM223A family with sequence similarity 223 member A (non-protein coding) non-coding RNA RNA, long non-coding Approved Xq28 Xq28 SPCX "CXorf52|NCRNA00204|NCRNA00204A|LINC00204A" "chromosome X open reading frame 52|non-protein coding RNA 204|non-protein coding RNA 204A|long intergenic non-protein coding RNA 204A|family with sequence similarity 223, member A (non-protein coding)" 2004-12-03 2012-07-04 2015-11-18 2016-09-30 100132967 ENSG00000279245 OTTHUMG00000057425 uc065chs.1 AY168775 NR_027401 Q8IWN6 +HGNC:34048 FAM223B family with sequence similarity 223 member B (non-protein coding) non-coding RNA RNA, long non-coding Approved Xq28 Xq28 "CXorf52B|NCRNA00204B|LINC00204B" "chromosome X open reading frame 52B|non-protein coding RNA 204B|long intergenic non-protein coding RNA 204B|family with sequence similarity 223, member B (non-protein coding)" 2008-04-02 2012-07-04 2015-11-18 2016-09-30 286967 ENSG00000272681 OTTHUMG00000188665 uc033fby.2 NR_027402 A6NKX1 +HGNC:37736 FAM224A family with sequence similarity 224 member A (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.222 Yq11.222 "NCRNA00230A|LINC00230A" "non-protein coding RNA 230A|long intergenic non-protein coding RNA 230A|family with sequence similarity 224, member A (non-protein coding)" 2010-02-10 2012-07-04 2015-11-18 2016-09-30 401630 ENSG00000233522 OTTHUMG00000041969 uc065ctb.1 AK026667 NR_002161 +HGNC:37737 FAM224B family with sequence similarity 224 member B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.222 Yq11.222 "NCRNA00230B|LINC00230B" "non-protein coding RNA 230B|long intergenic non-protein coding RNA 230B|family with sequence similarity 224, member B (non-protein coding)" 2010-02-10 2012-07-04 2015-11-18 2016-10-05 401629 ENSG00000230663 OTTHUMG00000036416 uc065csr.1 AI819212 NR_002160 +HGNC:27855 FAM225A family with sequence similarity 225 member A (non-protein coding) non-coding RNA RNA, long non-coding Approved 9q32 09q32 DKFZp686A0127 "C9orf109|NCRNA00256A|LINC00256A" "chromosome 9 open reading frame 109|non-protein coding RNA 256A|long intergenic non-protein coding RNA 256A|family with sequence similarity 225, member A (non-protein coding)" 2004-08-25 2012-07-04 2015-11-18 2016-09-30 286333 ENSG00000231528 OTTHUMG00000020516 uc064vdd.1 AL832752 NR_024366 +HGNC:21865 FAM225B family with sequence similarity 225 member B (non-protein coding) non-coding RNA RNA, long non-coding Approved 9q32 09q32 "C9orf110|NCRNA00256B|LINC00256B" "chromosome 9 open reading frame 110|non-protein coding RNA 256B|long intergenic non-protein coding RNA 256B|family with sequence similarity 225, member B (non-protein coding)" 2004-08-25 2012-07-04 2015-11-18 2016-09-30 100128385 ENSG00000225684 OTTHUMG00000020515 uc064vdc.1 BX647840 NR_024376 +HGNC:28544 FAM226A family with sequence similarity 226 member A (non-protein coding) non-coding RNA RNA, long non-coding Approved Xq13.1 Xq13.1 MGC34827 "CXorf50|NCRNA00246|NCRNA00246A|LINC00246A" "chromosome X open reading frame 50|non-protein coding RNA 246|non-protein coding RNA 246A|long intergenic non-protein coding RNA 246A|family with sequence similarity 226, member A (non-protein coding)" 2004-12-03 2012-07-04 2015-11-18 2016-10-05 203429 BC041962 NR_026595 12477932 +HGNC:31964 FAM226B family with sequence similarity 226 member B (non-protein coding) non-coding RNA RNA, long non-coding Approved Xq13.1 Xq13.1 "CXorf50B|NCRNA00246B|LINC00246B" "chromosome X open reading frame 50B|non-protein coding RNA 246B|long intergenic non-protein coding RNA 246B|family with sequence similarity 226, member B (non-protein coding)" 2007-08-03 2012-07-04 2015-11-18 2016-09-30 653687 BC025725 NR_026594 16382448 +HGNC:44197 FAM227A family with sequence similarity 227 member A protein-coding gene gene with protein product Approved 22q13.1 22q13.1 family with sequence similarity 227, member A 2012-07-04 2015-11-18 2016-09-30 646851 ENSG00000184949 OTTHUMG00000151133 uc062egg.1 NM_001013647 F5H4B4 MGI:1922979 RGD:1305939 FAM227A +HGNC:26543 FAM227B family with sequence similarity 227 member B protein-coding gene gene with protein product Approved 15q21.2 15q21.2 FLJ32800 C15orf33 "chromosome 15 open reading frame 33|family with sequence similarity 227, member B" 2005-10-20 2012-07-04 2015-11-18 2016-09-30 196951 ENSG00000166262 OTTHUMG00000172328 uc001zxl.3 NM_152647 "CCDS32237|CCDS81880" Q96M60 MGI:1923073 RGD:1359452 +HGNC:34418 FAM228A family with sequence similarity 228 member A protein-coding gene gene with protein product Approved 2p23.3 02p23.3 FLJ30851 C2orf84 "chromosome 2 open reading frame 84|family with sequence similarity 228, member A" 2009-01-26 2012-07-04 2015-11-18 2016-09-30 653140 ENSG00000186453 OTTHUMG00000151903 uc002rfc.3 NM_001040710 CCDS42659 Q86W67 MGI:1922105 RGD:1359275 +HGNC:24736 FAM228B family with sequence similarity 228 member B protein-coding gene gene with protein product Approved 2p23.3 02p23.3 family with sequence similarity 228, member B 2012-07-04 2015-11-18 2016-09-30 375190 ENSG00000219626 OTTHUMG00000151901 uc032ngu.2 NM_001145710 "CCDS74491|CCDS77387" P0C875 MGI:2442121 RGD:2324744 +HGNC:44652 FAM229A family with sequence similarity 229 member A protein-coding gene gene with protein product Approved 1p35.1 01p35.1 family with sequence similarity 229, member A 2012-12-12 2015-11-18 2016-09-30 100128071 ENSG00000225828 OTTHUMG00000007587 uc021oku.1 NM_001167676 CCDS57985 H3BQW9 MGI:1915483 RGD:1564163 +HGNC:33858 FAM229B family with sequence similarity 229 member B protein-coding gene gene with protein product Approved 6q21 06q21 "DKFZp586F0922|LOC619208" C6orf225 "chromosome 6 open reading frame 225|family with sequence similarity 229, member B" 2008-07-17 2012-12-12 2015-11-18 2016-09-30 619208 ENSG00000203778 OTTHUMG00000015383 uc003pvs.4 NM_001033564 CCDS34513 Q4G0N7 MGI:1913587 RGD:2300149 +HGNC:45045 FAM230A family with sequence similarity 230 member A other unknown Approved 22q11.21 22q11.21 DGCR15 family with sequence similarity 230, member A 2013-01-21 2015-11-18 2016-09-30 653203 ENSG00000277870 OTTHUMG00000189114 uc062bir.1 JX456222 NR_136560 +HGNC:32943 FAM230B family with sequence similarity 230 member B (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 FLJ46366 "family with sequence similarity 230, member B|family with sequence similarity 230, member B (non-protein coding)" 2013-01-21 2015-11-18 2016-09-30 642633 ENSG00000215498 OTTHUMG00000150782 uc062bxy.1 "BC039313|AK128837" NR_108107 +HGNC:24482 FAM230C family with sequence similarity 230 member C other unknown Approved 13q11 13q11 DKFZP434B061 "NCRNA00281|LINC00281" "non-protein coding RNA 281|long intergenic non-protein coding RNA 281|family with sequence similarity 230, member C" 2010-08-05 2013-01-25 2015-11-18 2016-09-30 26080 ENSG00000279516 OTTHUMG00000189381 uc001vuw.3 "AK097777|BC040613" NR_027278 +HGNC:49427 FAM231A family with sequence similarity 231 member A protein-coding gene gene with protein product Approved 1p36.13 01p36.13 family with sequence similarity 231, member A 2014-01-02 2015-11-18 2016-09-30 729574 ENSG00000237847 OTTHUMG00000189242 NM_001282321 CCDS65427 P0DMU4 +HGNC:49506 FAM231B family with sequence similarity 231 member B protein-coding gene gene with protein product Approved 1p36.13 01p36.13 family with sequence similarity 231, member B 2014-01-02 2015-11-18 2016-09-30 100133301 ENSG00000268991 OTTHUMG00000189241 XM_001721533 CCDS81270 A6NCW3 +HGNC:49508 FAM231C family with sequence similarity 231 member C protein-coding gene gene with protein product Approved 1p36.13 01p36.13 family with sequence similarity 231, member C 2014-01-02 2015-11-18 2016-09-30 102723383 ENSG00000279132 OTTHUMG00000189300 XM_001715369 P0DMU5 +HGNC:49509 FAM231D family with sequence similarity 231 member D protein-coding gene gene with protein product Approved 1q21.2 01q21.2 family with sequence similarity 231, member D 2014-01-02 2015-11-18 2016-09-30 644634 ENSG00000272058 OTTHUMG00000188775 XM_005277490 Q6ZW35 +HGNC:49507 FAM231EP family with sequence similarity 231 member E, pseudogene pseudogene pseudogene Approved 1p36.13 01p36.13 family with sequence similarity 231, member E, pseudogene 2014-01-02 2015-11-18 2016-09-30 100132070 NG_030192 PGOHUM00000295580 +HGNC:14163 FAM234A family with sequence similarity 234 member A protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "DKFZP761D0211|FLJ32603" "C16orf9|ITFG3" "chromosome 16 open reading frame 9|integrin alpha FG-GAP repeat containing 3|family with sequence similarity 234, member A" 2000-12-21 2015-08-13 2015-11-18 2016-09-30 83986 ENSG00000167930 OTTHUMG00000060728 AL136542 NM_032039 CCDS10402 Q9H0X4 MGI:2146854 RGD:1311484 +HGNC:29288 FAM234B family with sequence similarity 234 member B protein-coding gene gene with protein product Approved 12p13.1 12p13.1 KIAA1467 "KIAA1467|family with sequence similarity 234, member B" 2006-01-23 2015-08-13 2015-11-18 2016-09-30 57613 ENSG00000084444 OTTHUMG00000168774 AB040900 NM_020853 CCDS31750 A2RU67 10819331 MGI:1921775 RGD:1306151 +HGNC:29170 FAN1 FANCD2/FANCI-associated nuclease 1 protein-coding gene gene with protein product Approved 15q13.3 15q13.3 "KIAA1018|MTMR15" "KIAA1018|myotubularin related protein 15" 2005-10-28 2010-08-04 2010-08-04 2016-01-15 22909 ENSG00000198690 OTTHUMG00000175661 uc001zff.4 NM_014967 "CCDS32186|CCDS58344" Q9Y2M0 "20603015|20603016|20603073" MGI:3045266 RGD:1566323 FAN1 613534 308114 +HGNC:3582 FANCA Fanconi anemia complementation group A protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "FAA|FA-H|FAH" "FACA|FANCH" Fanconi anemia complementation groups 548 1995-12-22 2015-11-05 2016-10-12 2175 ENSG00000187741 OTTHUMG00000173049 uc002fou.2 Z83067 XM_005256294 "CCDS32515|CCDS42221|CCDS67099" O15360 "7581462|9382107" MGI:1341823 RGD:1311380 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCA|LRG_495|http://www.lrg-sequence.org/LRG/LRG_495" FANCA 607139 121693 +HGNC:3583 FANCB Fanconi anemia complementation group B protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "FAB|FLJ34064|FAAP95" Fanconi anemia complementation groups 548 1998-08-26 2015-11-05 2016-10-12 2187 ENSG00000181544 OTTHUMG00000021168 uc004cwh.2 AK091383 NM_152633 CCDS14161 Q8NB91 "9382107|15502827" MGI:2448558 RGD:1561555 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FANCB|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCB|LRG_496|http://www.lrg-sequence.org/LRG/LRG_496" FANCB 300515 121700 +HGNC:3584 FANCC Fanconi anemia complementation group C protein-coding gene gene with protein product Approved 9q22.32 09q22.32 "FAC|FA3" FACC Fanconi anemia complementation groups 548 1992-11-25 2015-11-05 2016-10-12 2176 ENSG00000158169 OTTHUMG00000020279 uc004avh.4 BC006303 NM_000136 "CCDS35071|CCDS75861" Q00597 1303234 MGI:95480 RGD:2593 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCC|LRG_497|http://www.lrg-sequence.org/LRG/LRG_497" FANCC 613899 121705 +HGNC:3585 FANCD2 Fanconi anemia complementation group D2 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "FAD|FA-D2" "FACD|FANCD" Fanconi anemia complementation groups 548 1996-01-04 2001-10-05 2015-11-05 2016-10-12 2177 ENSG00000144554 OTTHUMG00000128670 uc003buw.4 AF340183 NM_033084 "CCDS2595|CCDS33696" Q9BXW9 "7581463|11239453|18475298" MGI:2448480 RGD:1303172 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCD2|LRG_306|http://www.lrg-sequence.org/LRG/LRG_306" FANCD2 613984 121709 +HGNC:28623 FANCD2OS FANCD2 opposite strand protein-coding gene gene with protein product Approved 3p25.3 03p25.3 MGC40179 C3orf24 chromosome 3 open reading frame 24 2005-11-03 2012-11-12 2012-11-12 2014-11-19 115795 ENSG00000163705 OTTHUMG00000128669 uc003buz.3 AF230334 NM_173472 CCDS2596 Q96PS1 12477932 MGI:1918229 RGD:1565997 +HGNC:44487 FANCD2P1 Fanconi anemia complementation group D2 pseudogene 1 pseudogene pseudogene Approved 3p25.3 03p25.3 2012-11-12 2015-11-05 2015-11-05 100421239 NG_025673 PGOHUM00000299338 +HGNC:44488 FANCD2P2 Fanconi anemia complementation group D2 pseudogene 2 other unknown Approved 3p25.2 03p25.2 2012-11-12 2015-11-05 2015-11-05 101929530 ENSG00000230342 OTTHUMG00000155298 XM_017030238 PGOHUM00000299341 +HGNC:3586 FANCE Fanconi anemia complementation group E protein-coding gene gene with protein product Approved 6p21.31 06p21.31 FAE FACE Fanconi anemia complementation groups 548 1996-04-09 2015-11-05 2016-10-12 2178 ENSG00000112039 OTTHUMG00000014565 uc003oko.2 AF265210 XM_005248888 CCDS4805 Q9HB96 "7662964|11001585" MGI:1920025 RGD:1561045 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCE|LRG_498|http://www.lrg-sequence.org/LRG/LRG_498" FANCE 613976 121715 +HGNC:3587 FANCF Fanconi anemia complementation group F protein-coding gene gene with protein product Approved 11p14.3 11p14.3 FAF Fanconi anemia complementation groups 548 1998-08-26 2015-11-05 2016-10-12 2188 ENSG00000183161 OTTHUMG00000166070 uc001mql.2 NM_022725 CCDS7857 Q9NPI8 9382107 MGI:3689889 RGD:1561456 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCF|LRG_527|http://www.lrg-sequence.org/LRG/LRG_527" FANCF 613897 121719 +HGNC:3588 FANCG Fanconi anemia complementation group G protein-coding gene gene with protein product Approved 9p13.3 09p13.3 FAG "DNA repair protein XRCC9|X-ray repair, complementing defective, in Chinese hamster, 9|X-ray repair complementing defective repair in Chinese hamster cells 9" XRCC9 Fanconi anemia complementation groups 548 1998-08-26 2015-11-05 2016-10-12 2189 ENSG00000221829 OTTHUMG00000019850 uc003zwb.1 AJ007669 NM_004629 CCDS6574 O15287 "9256465|9382107" MGI:1926471 RGD:1587477 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCG|LRG_499|http://www.lrg-sequence.org/LRG/LRG_499" FANCG 602956 121722 +HGNC:25568 FANCI Fanconi anemia complementation group I protein-coding gene gene with protein product Approved 15q26.1 15q26.1 FLJ10719 KIAA1794 KIAA1794 Fanconi anemia complementation groups 548 2005-10-25 2007-05-03 2015-11-05 2016-10-12 55215 ENSG00000140525 OTTHUMG00000132993 uc010bnp.2 BC004277 NM_018193 "CCDS10349|CCDS45346" Q9NVI1 "14630800|17460694|17412408" MGI:2384790 RGD:2321863 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCI|LRG_500|http://www.lrg-sequence.org/LRG/LRG_500" FANCI 611360 138447 +HGNC:20748 FANCL Fanconi anemia complementation group L protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "FLJ10335|FAAP43|Pog" PHF9 PHD finger protein 9 "PHD finger proteins|Fanconi anemia complementation groups" "88|548" 2003-05-22 2003-10-15 2015-11-05 2016-10-12 55120 ENSG00000115392 OTTHUMG00000129349 uc002rzw.5 AK001197 NM_018062 "CCDS1860|CCDS46294" Q9NW38 MGI:1914280 RGD:1311427 "Fanconi Anaemia Mutation Database|http://www.rockefeller.edu/fanconi/mutate/|Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCL|LRG_501|http://www.lrg-sequence.org/LRG/LRG_501" FANCL 608111 121726 +HGNC:23168 FANCM Fanconi anemia complementation group M protein-coding gene gene with protein product Approved 14q21.2 14q21.2 FAAP250 KIAA1596 KIAA1596 "Fanconi anemia complementation groups|RNA helicases" "548|1168" 2003-11-21 2005-09-01 2015-11-05 2016-10-12 57697 ENSG00000187790 OTTHUMG00000170807 uc001wwd.5 AK001672 XM_048128 "CCDS32070|CCDS76677|CCDS81802" Q8IYD8 "10997877|16116422" MGI:2442306 RGD:1307897 "Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCM|LRG_502|http://www.lrg-sequence.org/LRG/LRG_502" FANCM 609644 121730 +HGNC:23527 FANK1 fibronectin type III and ankyrin repeat domains 1 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 fibronectin type 3 and ankyrin repeat domains 1 "Ankyrin repeat domain containing|Fibronectin type III domain containing" "403|555" 2003-11-21 2005-03-01 2014-11-19 92565 ENSG00000203780 OTTHUMG00000019241 uc001ljh.5 BC024189 NM_145235 CCDS31309 Q8TC84 12477932 MGI:1914180 RGD:1304756 FANK1 611640 +HGNC:43915 FANK1-AS1 FANK1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q26.2 10q26.2 FANK1 antisense RNA 1 (non-protein coding) 2012-05-03 2012-08-15 2012-10-12 101410540 ENSG00000233409 OTTHUMG00000019239 uc057wsz.1 AW080472 NR_102707 +HGNC:3590 FAP fibroblast activation protein alpha protein-coding gene gene with protein product Approved 2q24.2 02q24.2 DPPIV seprase fibroblast activation protein, alpha DASH family 1205 1995-03-28 2015-11-05 2016-10-05 2191 ENSG00000078098 OTTHUMG00000153890 uc002ucd.3 U09278 XM_011510796 "CCDS33311|CCDS77480" Q12884 "9247085|14707457" MGI:109608 RGD:621253 FAP 600403 S09.007 objectId:2365 +HGNC:26222 FAR1 fatty acyl-CoA reductase 1 protein-coding gene gene with protein product Approved 11p15.3 11p15.3 "FLJ22728|SDR10E1" short chain dehydrogenase/reductase family 10E, member 1 MLSTD2 male sterility domain containing 2 Short chain dehydrogenase/reductase superfamily 743 2004-03-01 2008-06-06 2015-11-11 2016-10-05 84188 ENSG00000197601 OTTHUMG00000165743 uc001mld.4 AK026381 NM_032228 CCDS7813 Q8WVX9 "15220348|15220349|19027726" MGI:1914670 RGD:1306647 FAR1 616107 446846 1.2.1.- +HGNC:41485 FAR1-IT1 FAR1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 11p15.3 11p15.3 FAR1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2016-10-05 106478978 ENSG00000254791 OTTHUMG00000165788 uc057zhc.1 +HGNC:39675 FAR1P1 fatty acyl-CoA reductase 1 pseudogene 1 pseudogene pseudogene Approved 13q31.3 13q31.3 2011-03-22 2015-11-11 2015-11-11 100128011 ENSG00000235879 OTTHUMG00000017182 NG_021972 PGOHUM00000248661 +HGNC:25531 FAR2 fatty acyl-CoA reductase 2 protein-coding gene gene with protein product Approved 12p11.22 12p11.22 "FLJ10462|SDR10E2" short chain dehydrogenase/reductase family 10E, member 2 MLSTD1 male sterility domain containing 1 Short chain dehydrogenase/reductase superfamily 743 2004-03-01 2008-06-06 2015-11-11 2016-10-05 55711 ENSG00000064763 OTTHUMG00000169320 uc001ris.6 AL136843 NM_018099 "CCDS8717|CCDS61084" Q96K12 "15220348|15220349|19027726" MGI:2687035 RGD:1565966 FAR2 616156 1.2.1.- +HGNC:49284 FAR2P1 fatty acyl-CoA reductase 2 pseudogene 1 pseudogene pseudogene Approved 2q21.1 02q21.1 LOC440905 2013-10-15 2015-11-11 2015-11-11 440905 ENSG00000180178 OTTHUMG00000153562 NR_026758 Q6ZU82 25085781 PGOHUM00000240292 +HGNC:49279 FAR2P2 fatty acyl-CoA reductase 2 pseudogene 2 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-10-15 2015-11-11 2015-11-11 100216479 ENSG00000178162 OTTHUMG00000153927 NR_046258 PGOHUM00000240300 +HGNC:49285 FAR2P3 fatty acyl-CoA reductase 2 pseudogene 3 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-10-15 2015-11-11 2015-11-11 100288897 ENSG00000240253 OTTHUMG00000154049 PGOHUM00000240935 +HGNC:49286 FAR2P4 fatty acyl-CoA reductase 2 pseudogene 4 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-10-15 2015-11-11 2015-11-11 100420005 ENSG00000231431 OTTHUMG00000153559 NG_023727 PGOHUM00000240939 +HGNC:3591 FARP1 FERM, ARH/RhoGEF and pleckstrin domain protein 1 protein-coding gene gene with protein product Approved 13q32.2 13q32.2 "CDEP|PLEKHC2|MGC87400|PPP1R75" protein phosphatase 1, regulatory subunit 75 FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) "Pleckstrin homology domain containing|Protein phosphatase 1 regulatory subunits|Rho guanine nucleotide exchange factors|FERM domain containing" "682|694|722|1293" 2000-04-12 2015-11-09 2015-11-09 10160 ENSG00000152767 OTTHUMG00000017248 uc001vnj.5 AB008430 NM_005766 "CCDS9487|CCDS32000|CCDS66572" Q9Y4F1 9425278 MGI:2446173 RGD:1305346 FARP1 602654 +HGNC:40229 FARP1-AS1 FARP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q32.2 13q32.2 FARP1 antisense RNA 1 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874080 ENSG00000231194 OTTHUMG00000017247 uc058xxv.1 +HGNC:39810 FARP1-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:16460 FARP2 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "KIAA0793|FIR|PLEKHC3|FRG" FERM, RhoGEF and pleckstrin domain protein 2 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|FERM domain containing" "682|722|1293" 2002-11-29 2015-11-09 2015-11-09 9855 ENSG00000006607 OTTHUMG00000151574 uc002wbi.4 AB018336 XM_017005416 "CCDS33424|CCDS63197|CCDS63198" O94887 "9872452|12351724" MGI:2385126 RGD:1308003 FARP2 +HGNC:21062 FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 6p25.1 06p25.1 dJ236A3.1 phenylalanine tRNA ligase 2, mitochondrial FARS1 phenylalanine-tRNA synthetase 1 (mitochondrial) Aminoacyl tRNA synthetases, Class II 132 2003-05-13 2004-12-03 2007-02-23 2014-11-19 10667 ENSG00000145982 OTTHUMG00000014178 uc010jnv.2 AF097441 NM_006567 CCDS4494 O95363 10329163 MGI:1917205 RGD:1309416 FARS2 611592 315385 6.1.1.20 +HGNC:3592 FARSA phenylalanyl-tRNA synthetase alpha subunit protein-coding gene gene with protein product Approved 19p13.13 19p13.13 CML33 phenylalanine tRNA ligase 1, alpha, cytoplasmic "FARSL|FARSLA" "phenylalanine-tRNA synthetase-like|phenylalanyl-tRNA synthetase-like, alpha subunit|phenylalanyl-tRNA synthetase, alpha subunit" Aminoacyl tRNA synthetases, Class II 132 1997-07-07 2007-02-23 2015-11-05 2016-10-05 2193 ENSG00000179115 OTTHUMG00000180569 uc002mvs.3 U07424 NM_004461 CCDS12287 Q9Y285 9177188 MGI:1913840 RGD:1310314 FARSA 602918 6.1.1.20 +HGNC:50479 FARSA-AS1 FARSA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19p13.13 19p13.13 2014-05-06 2016-10-05 106144598 ENSG00000266975 OTTHUMG00000180573 AW881480 +HGNC:17800 FARSB phenylalanyl-tRNA synthetase beta subunit protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "PheHB|FRSB" phenylalanine tRNA ligase 1, beta, cytoplasmic FARSLB "phenylalanyl-tRNA synthetase-like, beta subunit|phenylalanyl-tRNA synthetase, beta subunit" Aminoacyl tRNA synthetases, Class II 132 2004-01-05 2007-02-23 2015-11-05 2016-10-05 10056 ENSG00000116120 OTTHUMG00000133155 uc002vne.2 AF042346 NM_005687 CCDS2454 Q9NSD9 10049785 MGI:1346035 RGD:1303210 FARSB 609690 6.1.1.20 +HGNC:45115 FARSBP1 phenylalanyl-tRNA synthetase beta subunit pseudogene 1 pseudogene pseudogene Approved 10q23.1 10q23.1 2013-02-15 2015-11-05 2015-11-05 647532 ENSG00000231060 OTTHUMG00000018621 NG_005861 PGOHUM00000258496 +HGNC:11920 FAS Fas cell surface death receptor protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "CD95|APO-1" TNF receptor superfamily member 6 "FAS1|APT1|TNFRSF6" "tumor necrosis factor receptor superfamily, member 6|Fas (TNF receptor superfamily, member 6)" "CD molecules|Tumor necrosis factor receptor superfamily|Death inducing signaling complex " "471|782|1342" 1992-06-25 2005-01-07 2013-05-22 2016-10-12 355 ENSG00000026103 OTTHUMG00000018701 uc001kfr.4 M67454 NM_152871 "CCDS7393|CCDS7394|CCDS7395" P25445 "1385299|1385309" MGI:95484 RGD:619831 "Autoimmune Lymphoproliferative Syndrome Database (ALPSbase): Database of mutations causing human ALPS|http://research.nhgri.nih.gov/ALPS/|LOVD at NCBI|http://www.ncbi.nlm.nih.gov/lovd/home.php?select_db=FAS|LRG_134|http://www.lrg-sequence.org/LRG/LRG_134" FAS 134637 121733 objectId:1875 CD95 +HGNC:37128 FAS-AS1 FAS antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.31 10q23.31 SAF "FASAS|FAS-AS" "FAS antisense RNA (non-protein coding)|FAS antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2009-07-16 2010-11-25 2012-08-15 2016-10-05 100302740 uc058vuu.1 NR_028371 "15829500|24811343" saf +HGNC:11936 FASLG Fas ligand protein-coding gene gene with protein product Approved 1q24.3 01q24.3 "FasL|CD178" "APT1LG1|TNFSF6" "tumor necrosis factor (ligand) superfamily, member 6|Fas ligand (TNF superfamily, member 6)" "CD molecules|Endogenous ligands|Tumor necrosis factor superfamily|Death inducing signaling complex " "471|542|781|1342" 1994-12-09 2005-01-07 2015-11-17 2016-10-12 356 ENSG00000117560 OTTHUMG00000034841 uc001gis.4 U11821 NM_000639 "CCDS1304|CCDS76243" P48023 "7826947|9022072" MGI:99255 RGD:3880 "FASLGbase: Mutation registry for Autoimmune lymphoproliferative syndrome, type 1B (ALPS1B) (previously known as TNFSF6base)|http://structure.bmc.lu.se/idbase/FASLGbase/|LRG_58|http://www.lrg-sequence.org/LRG/LRG_58" FASLG 134638 121740 CD178 +HGNC:3594 FASN fatty acid synthase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FAS|SDR27X1" short chain dehydrogenase/reductase family 27X, member 1 Short chain dehydrogenase/reductase superfamily 743 1994-05-17 2016-10-05 2194 ENSG00000169710 OTTHUMG00000178527 uc002kdu.5 U26644 NM_004104 CCDS11801 P49327 "7835891|7567999|19027726" MGI:95485 RGD:620665 FASN 600212 objectId:2608 2.3.1.85 +HGNC:24676 FASTK Fas activated serine/threonine kinase protein-coding gene gene with protein product Approved 7q36.1 07q36.1 FAST Fas-activated serine/threonine kinase 2005-04-05 2016-02-03 2016-10-05 10922 ENSG00000164896 OTTHUMG00000158694 uc003wix.3 NM_006712 "CCDS5918|CCDS5919|CCDS59088" Q14296 "7544399|15572676" MGI:1913837 RGD:1311601 FASTK 606965 +HGNC:26150 FASTKD1 FAST kinase domains 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 FLJ21901 2006-07-07 2014-11-19 79675 ENSG00000138399 OTTHUMG00000154953 uc002uev.6 AL832058 NM_024622 "CCDS33318|CCDS63051" Q53R41 11347906 MGI:2444596 RGD:1563531 FASTKD1 +HGNC:29160 FASTKD2 FAST kinase domains 2 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 KIAA0971 KIAA0971 2004-06-28 2006-07-07 2006-07-07 2014-11-19 22868 ENSG00000118246 OTTHUMG00000132917 uc002vbv.4 BC001544 NM_014929 CCDS2371 Q9NYY8 MGI:1922869 RGD:1307883 FASTKD2 612322 168272 +HGNC:28758 FASTKD3 FAST kinase domains 3 protein-coding gene gene with protein product Approved 5p15.31 05p15.31 "MGC5297|FLJ23274" 2006-07-07 2014-11-19 79072 ENSG00000124279 OTTHUMG00000131029 uc003jeb.4 AK026927 NM_024091 CCDS3873 Q14CZ7 12477932 MGI:1916827 RGD:1309729 FASTKD3 +HGNC:25790 FASTKD5 FAST kinase domains 5 protein-coding gene gene with protein product Approved 20p13 20p13 FLJ13149 2006-07-07 2015-08-25 60493 ENSG00000215251 OTTHUMG00000031727 uc002whz.5 BC007413 NM_021826 CCDS13048 Q7L8L6 11347906 MGI:2139469 RGD:1563839 FASTKD5 614272 +HGNC:3595 FAT1 FAT atypical cadherin 1 protein-coding gene gene with protein product Approved 4q35.2 04q35.2 "CDHF7|CDHR8" cadherin-related family member 8 FAT "FAT tumor suppressor (Drosophila) homolog|FAT tumor suppressor homolog 1 (Drosophila)" Cadherin related 24 1995-08-11 2008-10-30 2013-05-31 2015-09-11 2195 ENSG00000083857 OTTHUMG00000160320 uc003izf.4 X87241 NM_005245 CCDS47177 Q14517 8586420 MGI:109168 RGD:621254 FAT1 600976 +HGNC:16582 FAT1P1 FAT atypical cadherin 1 pseudogene 1 pseudogene pseudogene Approved 20p12.2 20p12.2 dJ697P8.1 "FAT tumor suppressor (Drosophila) homolog pseudogene 1|FAT tumor suppressor homolog 1 (Drosophila) pseudogene 1" 2001-09-17 2014-06-24 2014-11-19 170513 ENSG00000217809 OTTHUMG00000031878 AL050403 NG_001036 PGOHUM00000247443 +HGNC:3596 FAT2 FAT atypical cadherin 2 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "MEGF1|CDHF8|HFAT2|CDHR9" cadherin-related family member 9 "FAT tumor suppressor (Drosophila) homolog 2|FAT tumor suppressor homolog 2 (Drosophila)" Cadherin related 24 1998-03-25 2013-05-31 2015-09-11 2196 ENSG00000086570 OTTHUMG00000130126 uc003lue.5 AF231022 NM_001447 CCDS4317 Q9NYQ8 9693030 MGI:2685369 RGD:620656 FAT2 604269 +HGNC:23112 FAT3 FAT atypical cadherin 3 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 "KIAA1989|CDHF15|CDHR10" cadherin-related family member 10 FAT tumor suppressor homolog 3 (Drosophila) Cadherin related 24 2003-09-11 2013-05-31 2015-09-01 120114 ENSG00000165323 OTTHUMG00000154468 uc001pdj.5 AB076400 NM_001008781 Q8TDW7 11811999 MGI:2444314 RGD:620657 FAT3 612483 +HGNC:23109 FAT4 FAT atypical cadherin 4 protein-coding gene gene with protein product Approved 4q28.1 04q28.1 "CDHF14|FAT-J|CDHR11" cadherin-related family member 11 FAT tumor suppressor homolog 4 (Drosophila) Cadherin related 24 2003-09-11 2013-05-31 2015-09-01 79633 ENSG00000196159 OTTHUMG00000133100 uc003ifj.5 AY356402 NM_024582 CCDS3732 Q6V0I7 15003449 MGI:3045256 RGD:1564291 FAT4 612411 371950 +HGNC:24683 FATE1 fetal and adult testis expressed 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "FATE|CT43" cancer/testis antigen 43 2004-09-01 2015-08-25 89885 ENSG00000147378 OTTHUMG00000024172 uc004fex.4 AF249872 NM_033085 CCDS14700 Q969F0 11694338 MGI:1925155 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FATE1 FATE1 300450 +HGNC:3597 FAU FAU, ubiquitin like and ribosomal protein S30 fusion protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "RPS30|FLJ22986|Fub1|Fubi|MNSFbeta|asr1|S30" "ribosomal protein S30|Monoclonal nonspecific suppressor factor beta" "Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)|Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed" S ribosomal proteins 728 1992-12-02 2016-06-21 2016-06-21 2197 ENSG00000149806 OTTHUMG00000165606 uc001ocx.4 AK026639 NM_001997 CCDS8095 "P35544|P62861" 8406491 MGI:102547 RGD:61938 FAU 134690 +HGNC:3598 FAUNA@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-03-29 +HGNC:17984 FAUP1 FAU, ubiquitin like and ribosomal protein S30 fusion pseudogene 1 pseudogene pseudogene Approved 18q22.3 18q22.3 FAU1P FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 1 2009-03-01 2016-06-27 2016-06-27 140623 ENSG00000235297 OTTHUMG00000158397 U02523 NG_001306 "7642109|19123937" +HGNC:36535 FAUP2 FAU, ubiquitin like and ribosomal protein S30 fusion pseudogene 2 pseudogene pseudogene Approved 3q26.33 03q26.33 FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 2 2009-03-06 2016-06-27 2016-06-27 100271125 ENSG00000237806 OTTHUMG00000157271 NG_010095 19123937 PGOHUM00000237883 +HGNC:36970 FAUP3 FAU, ubiquitin like and ribosomal protein S30 fusion pseudogene 3 pseudogene pseudogene Approved 4q35.2 04q35.2 FBR-MuSV-associated ubiquitously expressed (fox derived) pseudogene 3 2009-03-06 2016-06-27 2016-06-27 100271126 NG_010102 19123937 +HGNC:20742 FAXC failed axon connections homolog protein-coding gene gene with protein product Approved 6q16.2 06q16.2 "MGC2817|dJ273F20" C6orf168 "chromosome 6 open reading frame 168|failed axon connections homolog (Drosophila)" 2003-06-16 2012-02-07 2015-06-11 2016-10-05 84553 ENSG00000146267 OTTHUMG00000015261 uc003ppj.5 BC011583 NM_032511 CCDS34500 Q5TGI0 12477932 MGI:1923382 RGD:1562449 +HGNC:1334 FAXDC2 fatty acid hydroxylase domain containing 2 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 FLJ13758 C5orf4 chromosome 5 open reading frame 4 Fatty acid hydroxylase domain containing 552 1999-07-22 2013-03-04 2013-03-04 2016-10-05 10826 ENSG00000170271 OTTHUMG00000164141 uc003lvs.5 AF159165 NM_032385 CCDS43390 Q96IV6 10843801 RGD:1586284 +HGNC:24674 FBF1 Fas binding factor 1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "FLJ00103|FBF-1|KIAA1863|ALB" albatross Fas (TNFRSF6) binding factor 1 2004-02-19 2016-04-20 2016-04-20 85302 ENSG00000188878 OTTHUMG00000179919 uc060kfj.1 AK074045 NM_001080542 CCDS45779 Q8TES7 11347906 MGI:1922033 RGD:1310662 FBF1 616807 +HGNC:3599 FBL fibrillarin protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "RNU3IP1|FLRN|FIB" 1991-09-12 2016-10-05 2091 ENSG00000105202 OTTHUMG00000182581 uc002omn.4 AC005393 NM_001436 CCDS12545 P22087 "1846968|2026646" MGI:95486 RGD:1305542 FBL 134795 +HGNC:24686 FBLIM1 filamin binding LIM protein 1 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "FBLP-1|CAL|migfilin" LIM domain containing 1218 2005-06-15 2016-10-05 54751 ENSG00000162458 OTTHUMG00000003079 uc001axd.2 NM_001024215 "CCDS163|CCDS30609|CCDS44064" Q8WUP2 "12679033|12496242" MGI:1921452 RGD:1359551 FBLIM1 607747 +HGNC:35458 FBLL1 fibrillarin-like 1 other unknown Approved 5q34 05q34 LOC345630 2009-02-12 2016-10-05 345630 ENSG00000188573 OTTHUMG00000157012 uc011dep.3 NR_024356 A6NHQ2 MGI:3034689 RGD:1562841 +HGNC:3600 FBLN1 fibulin 1 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 FBLN Fibulins 556 1994-02-08 2014-11-18 2192 ENSG00000077942 OTTHUMG00000151340 uc003bgj.2 NM_006486 "CCDS14067|CCDS14068|CCDS14069|CCDS43028" P23142 "2269669|1400330" MGI:95487 RGD:1308667 FBLN1 135820 139855 +HGNC:3601 FBLN2 fibulin 2 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 Fibulins 556 1994-02-24 2016-10-05 2199 ENSG00000163520 OTTHUMG00000155437 uc011ava.3 X82494 NM_001004019 "CCDS46761|CCDS46762" P98095 7806230 MGI:95488 RGD:628685 FBLN2 135821 +HGNC:3602 FBLN5 fibulin 5 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "EVEC|UP50|DANCE|ARMD3" Fibulins 556 1999-06-25 2016-10-12 10516 ENSG00000140092 OTTHUMG00000171122 uc001xzx.5 AJ133490 XM_017020929 CCDS9898 Q9UBX5 10640802 MGI:1346091 RGD:2594 LRG_364|http://www.lrg-sequence.org/LRG/LRG_364 FBLN5 604580 121746 +HGNC:26740 FBLN7 fibulin 7 protein-coding gene gene with protein product Approved 2q13 02q13 "FLJ37440|TM14" "Fibulins|Sushi domain containing" "556|1179" 2007-10-15 2014-11-19 129804 ENSG00000144152 OTTHUMG00000153267 uc002tho.2 NM_153214 "CCDS2095|CCDS46391" Q53RD9 17699513 MGI:1917620 RGD:1310131 FBLN7 611551 +HGNC:3603 FBN1 fibrillin 1 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "MASS|OCTD|SGS" Marfan syndrome "FBN|MFS1|WMS" fibrillin 1 (Marfan syndrome) 1987-09-11 2006-04-25 2016-10-12 2200 ENSG00000166147 OTTHUMG00000172218 uc001zwx.3 X63556 NM_000138 CCDS32232 P35555 "10036187|12525539" MGI:95489 RGD:620908 "UMD Locus Specific Databases|http://www.umd.be/|LRG_778|http://www.lrg-sequence.org/LRG/LRG_778" FBN1 134797 121752 +HGNC:3604 FBN2 fibrillin 2 protein-coding gene gene with protein product Approved 5q23.3 05q23.3 DA9 fibrillin 5 CCA congenital contractural arachnodactyly 1991-08-21 2008-08-01 2016-01-15 2201 ENSG00000138829 OTTHUMG00000163082 uc063gqk.1 U03272 NM_001999 CCDS34222 P35556 "1852206|8120105" MGI:95490 RGD:620910 FBN2 612570 121760 +HGNC:18794 FBN3 fibrillin 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 2002-07-25 2016-10-05 84467 ENSG00000142449 OTTHUMG00000182462 uc002mjf.4 NM_032447 CCDS12196 Q75N90 FBN3 608529 +HGNC:3606 FBP1 fructose-bisphosphatase 1 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 FBP fructose-1,6-bisphosphatase 1 Fructose-1,6-bisphosphatases 1075 1993-08-19 2015-11-27 2016-10-05 2203 ENSG00000165140 OTTHUMG00000020268 uc010mrl.4 M19922 NM_000507 CCDS6712 P09467 8387495 MGI:95492 RGD:2595 FBP1 611570 121763 3.1.3.11 +HGNC:3607 FBP2 fructose-bisphosphatase 2 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 fructose-1,6-bisphosphatase 2 Fructose-1,6-bisphosphatases 1075 1998-12-09 2015-11-27 2016-10-05 8789 ENSG00000130957 OTTHUMG00000020269 uc004auv.5 Y10812 NM_003837 CCDS6711 O00757 9678974 MGI:95491 RGD:620930 FBP2 603027 3.1.3.11 +HGNC:49924 FBP2P1 fructose-1,6-bisphosphatase 2 pseudogene 1 pseudogene pseudogene Approved 9q22.1 09q22.1 2014-03-21 2014-03-21 100420269 ENSG00000237743 OTTHUMG00000020158 NG_023842 PGOHUM00000236240 +HGNC:20442 FBRS fibrosin protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "FBS|FLJ11618" FBS1 fibrosin 1 2003-02-11 2007-04-18 2007-04-18 2014-11-19 64319 ENSG00000156860 OTTHUMG00000132390 uc002dzd.4 AK021680 NM_022452 CCDS45462 Q9HAH7 "7892239|9809749" MGI:104648 RGD:1594591 FBRS 608601 +HGNC:29308 FBRSL1 fibrosin like 1 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 KIAA1545 fibrosin-like 1 2008-12-09 2016-03-09 2016-03-09 57666 ENSG00000112787 OTTHUMG00000167991 uc001ukf.4 XM_011534803 CCDS45010 Q9HCM7 10997877 MGI:1920907 RGD:1563342 FBRSL1 +HGNC:13598 FBXL2 F-box and leucine rich repeat protein 2 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 "FBL2|FBL3" F-box and leucine rich repeat proteins 558 2000-09-27 2016-06-06 2016-06-06 25827 ENSG00000153558 OTTHUMG00000130745 uc003cfp.4 AF174589 NM_012157 "CCDS2658|CCDS54560" Q9UKC9 "10508920|10531035" MGI:1919429 RGD:1562243 FBXL2 605652 +HGNC:13599 FBXL3 F-box and leucine rich repeat protein 3 protein-coding gene gene with protein product Approved 13q22.3 13q22.3 "FBL3|FBL3A" FBXL3A F-box and leucine-rich repeat protein 3A F-box and leucine rich repeat proteins 558 2000-09-27 2004-07-21 2016-06-06 2016-10-05 26224 ENSG00000005812 OTTHUMG00000017099 uc001vkd.4 AF129532 XM_017020538 CCDS9457 Q9UKT7 "10531035|10828603" MGI:1354702 RGD:1305660 FBXL3 605653 +HGNC:13601 FBXL4 F-box and leucine rich repeat protein 4 protein-coding gene gene with protein product Approved 6q16.1-q16.2 06q16.1-q16.2 "FBL4|FBL5" F-box and leucine rich repeat proteins 558 2000-09-27 2016-06-06 2016-10-11 26235 ENSG00000112234 OTTHUMG00000015259 uc003ppg.3 AF176699 XM_017010726 CCDS5041 Q9UKA2 10531035 MGI:2140367 RGD:1305724 FBXL4 605654 376502 +HGNC:13602 FBXL5 F-box and leucine rich repeat protein 5 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "FBL4|FBL5|FLR1" F-box and leucine rich repeat proteins 558 2000-09-27 2016-06-06 2016-10-05 26234 ENSG00000118564 OTTHUMG00000097097 uc003goc.3 AF174591 XM_006713959 "CCDS3415|CCDS54745" Q9UKA1 10531035 MGI:2152883 RGD:1306887 FBXL5 605655 +HGNC:13603 FBXL6 F-box and leucine rich repeat protein 6 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FBL6 F-box and leucine rich repeat proteins 558 2000-09-27 2016-06-06 2016-06-06 26233 ENSG00000182325 OTTHUMG00000165169 uc003zcb.4 AF174592 NM_024555 "CCDS6422|CCDS47942" Q8N531 "10531035|10531037" MGI:1354705 RGD:1359687 FBXL6 609076 +HGNC:13604 FBXL7 F-box and leucine rich repeat protein 7 protein-coding gene gene with protein product Approved 5p15.1 05p15.1 "KIAA0840|FBL7|FBL6" F-box and leucine rich repeat proteins 558 2000-09-27 2016-06-06 2016-06-06 23194 ENSG00000183580 OTTHUMG00000161798 uc003jfn.3 AB020647 NM_012304 "CCDS54833|CCDS64129" Q9UJT9 "10048485|10531035" MGI:3052506 RGD:1305813 FBXL7 605656 +HGNC:17875 FBXL8 F-box and leucine rich repeat protein 8 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 Fbl8 F-box and leucine rich repeat proteins 558 2001-12-20 2016-06-06 2016-10-05 55336 ENSG00000135722 OTTHUMG00000137514 uc002erk.2 AK002140 NM_018378 CCDS10831 Q96CD0 MGI:1354697 RGD:1566420 FBXL8 609077 +HGNC:13611 FBXL12 F-box and leucine rich repeat protein 12 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "FLJ20188|Fbl12" F-box and leucine rich repeat proteins 558 2003-06-09 2016-06-06 2016-07-25 54850 ENSG00000127452 OTTHUMG00000180212 uc002mme.3 AK000195 NM_017703 "CCDS12218|CCDS82287" Q9NXK8 10531037 MGI:1354738 RGD:1305528 FBXL12 609079 +HGNC:21658 FBXL13 F-box and leucine rich repeat protein 13 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MGC21636|Fbl13|DRC6" "F-box and leucine rich repeat proteins|Dynein regulatory complex" "558|981" 2004-06-15 2016-06-06 2016-06-06 222235 ENSG00000161040 OTTHUMG00000157224 uc003vaq.3 BC031285 NM_145032 "CCDS5726|CCDS47678|CCDS75649" Q8NEE6 MGI:2443416 RGD:1642425 FBXL13 609080 +HGNC:28624 FBXL14 F-box and leucine rich repeat protein 14 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "MGC40195|Fbl14" F-box and leucine rich repeat proteins 558 2004-01-08 2016-06-06 2016-06-06 144699 ENSG00000171823 OTTHUMG00000090369 uc001qjh.3 BC028132 NM_152441 CCDS8509 Q8N1E6 12477932 MGI:2141676 RGD:1305523 FBXL14 609081 +HGNC:28155 FBXL15 F-box and leucine rich repeat protein 15 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "MGC11279|Fbl15" FBXO37 F-box only protein 37 F-box and leucine rich repeat proteins 558 2004-04-07 2004-06-16 2016-06-06 2016-06-06 79176 ENSG00000107872 OTTHUMG00000018957 uc001kvk.2 BC036120 XM_370575 CCDS31273 Q9H469 MGI:1915681 RGD:1306444 FBXL15 610287 +HGNC:14150 FBXL16 F-box and leucine rich repeat protein 16 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "MGC33974|Fbl16" C16orf22 chromosome 16 open reading frame 22 F-box and leucine rich repeat proteins 558 2000-12-21 2004-06-16 2016-06-06 2016-06-06 146330 ENSG00000127585 OTTHUMG00000090420 uc021taa.2 BC036680 NM_153350 CCDS10421 Q8N461 11157797 MGI:2448488 RGD:1309127 FBXL16 609082 +HGNC:13615 FBXL17 F-box and leucine rich repeat protein 17 protein-coding gene gene with protein product Approved 5q21.3 05q21.3 "DKFZP434C1715|Fbx13|Fbl17" FBXO13 F-box only protein 13 F-box and leucine rich repeat proteins 558 2003-01-15 2004-06-16 2016-06-06 2016-06-06 64839 ENSG00000145743 OTTHUMG00000159785 uc011cvc.3 AL133602 XM_005272048 CCDS54886 Q9UF56 MGI:1354704 RGD:1309773 FBXL17 609083 +HGNC:21874 FBXL18 F-box and leucine rich repeat protein 18 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "FLJ11467|Fbl18" F-box and leucine rich repeat proteins 558 2004-06-15 2016-06-06 2016-10-05 80028 ENSG00000155034 OTTHUMG00000151832 uc003son.5 AK057042 NM_024963 CCDS43546 Q96ME1 MGI:2444450 RGD:1596958 FBXL18 609084 +HGNC:25300 FBXL19 F-box and leucine rich repeat protein 19 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "DKFZp434K0410|Fbl19|JHDM1C|CXXC11" jumonji C domain-containing histone demethylase 1C "PHD finger proteins|Zinc fingers CXXC-type|F-box and leucine rich repeat proteins" "88|136|558" 2004-06-15 2016-06-06 2016-06-06 54620 ENSG00000099364 OTTHUMG00000132403 uc002eab.2 AK127701 NM_019085 "CCDS45465|CCDS73873" Q6PCT2 MGI:3039600 RGD:1310989 FBXL19 609085 +HGNC:27557 FBXL19-AS1 FBXL19 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 16p11.2 16p11.2 "MGC125469|MGC125470|MGC125472" NCRNA00095 "non-protein coding RNA 95|FBXL19 antisense RNA 1 (non-protein coding)|FBXL19 antisense RNA 1" 2008-09-03 2011-03-30 2012-08-16 2012-10-12 283932 ENSG00000260852 OTTHUMG00000176767 uc002dzy.4 AK090544 NR_024348 Q494R0 +HGNC:24679 FBXL20 F-box and leucine rich repeat protein 20 protein-coding gene gene with protein product Approved 17q12 17q12 "MGC15482|Fbl2|Fbl20" F-box and leucine rich repeat proteins 558 2004-06-15 2016-06-06 2016-10-05 84961 ENSG00000108306 OTTHUMG00000179002 uc002hrt.4 BC007557 NM_032875 "CCDS32640|CCDS54116" Q96IG2 12477932 MGI:1919444 RGD:621722 FBXL20 609086 +HGNC:13600 FBXL21 F-box and leucine rich repeat protein 21 (gene/pseudogene) protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "FBL3B|Fbl21" "FBXL3B|FBXL3P" "F-box and leucine-rich repeat protein 3 pseudogene|F-box and leucine-rich repeat protein 21|F-box and leucine-rich repeat protein 21 (gene/pseudogene)" F-box and leucine rich repeat proteins 558 2000-09-27 2004-07-21 2016-06-06 2016-10-05 26223 ENSG00000164616 OTTHUMG00000155971 AF129533 NM_012159 Q9UKT6 10531035 MGI:2442921 RGD:1305555 FBXL21 609087 +HGNC:27537 FBXL22 F-box and leucine rich repeat protein 22 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "Fbl22|FLJ39626" F-box and leucine rich repeat proteins 558 2004-08-09 2016-06-06 2016-10-05 283807 ENSG00000197361 OTTHUMG00000132905 uc002amn.5 BC065833 NM_203373 CCDS10187 Q6P050 22972877 MGI:1921415 RGD:1311830 FBXL22 609088 +HGNC:13581 FBXO2 F-box protein 2 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "FBX2|Nfb42|Fbs1|Fbg1" OCP1 "F-box only protein 2|organ of Corti protein 1" F-boxes other 560 2000-09-27 2004-06-15 2016-10-05 26232 ENSG00000116661 OTTHUMG00000002072 uc001asj.4 AF174594 NM_012168 CCDS130 Q9UK22 "10531035|10531037" MGI:2446216 RGD:621751 FBXO2 607112 +HGNC:13582 FBXO3 F-box protein 3 protein-coding gene gene with protein product Approved 11p13 11p13 "FBX3|FBA" F-box only protein 3 F-boxes other 560 2000-09-27 2004-06-15 2014-11-19 26273 ENSG00000110429 OTTHUMG00000166244 uc001muz.4 AK001943 NM_012175 "CCDS7887|CCDS44566" Q9UK99 10531037 MGI:1929084 RGD:1593433 FBXO3 609089 +HGNC:51147 FBXO3-AS1 FBXO3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 11p13 11p13 2014-07-30 2014-07-30 101928440 ENSG00000254508 OTTHUMG00000166272 NR_120550 +HGNC:13583 FBXO4 F-box protein 4 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 FBX4 F-box only protein 4 F-boxes other 560 2000-09-27 2004-06-15 2016-10-05 26272 ENSG00000151876 OTTHUMG00000094799 uc003jmq.4 AF129534 XM_011514026 "CCDS3938|CCDS3939|CCDS75238" Q9UKT5 "10531035|10531037" MGI:2146220 RGD:1307580 FBXO4 609090 +HGNC:13584 FBXO5 F-box protein 5 protein-coding gene gene with protein product Approved 6q25.2 06q25.2 "FBX5|Fbxo31|EMI1" F-box only protein 5 F-boxes other 560 2000-09-27 2004-06-15 2016-10-05 26271 ENSG00000112029 OTTHUMG00000015854 uc003qpg.4 AF129535 NM_012177 "CCDS5242|CCDS47501" Q9UKT4 "10531035|10531037" MGI:1914391 RGD:1309405 FBXO5 606013 +HGNC:13585 FBXO6 F-box protein 6 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "FBX6|FBG2|FBS2|Fbx6b" F-box only protein 6 F-boxes other 560 2000-09-27 2004-06-15 2015-09-01 26270 ENSG00000116663 OTTHUMG00000002229 uc001aso.4 AF129536 NM_018438 CCDS133 Q9NRD1 "10531035|10945468" MGI:1354743 RGD:620418 FBXO6 605647 +HGNC:13586 FBXO7 F-box protein 7 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "FBX7|Fbx|PARK15" F-box only protein 7 "F-boxes other|Parkinson disease associated genes" "560|672" 2000-09-27 2004-06-15 2015-08-25 25793 ENSG00000100225 OTTHUMG00000030674 uc003amq.4 AF129537 NM_001257990 "CCDS13907|CCDS58806|CCDS46695" Q9Y3I1 "10531035|10531037|19038853" MGI:1917004 RGD:1305648 FBXO7 605648 181111 +HGNC:13587 FBXO8 F-box protein 8 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 "FBX8|FBS" F-box only protein 8 F-boxes other 560 2000-09-27 2004-06-15 2015-08-25 26269 ENSG00000164117 OTTHUMG00000160746 uc003itp.4 AF174596 NM_012180 CCDS3820 Q9NRD0 "10531035|10531037" MGI:1354696 RGD:1307596 FBXO8 605649 +HGNC:13588 FBXO9 F-box protein 9 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "FBX9|NY-REN-57" F-box only protein 9 F-boxes other 560 2000-09-27 2004-06-15 2016-10-05 26268 ENSG00000112146 OTTHUMG00000014869 uc063pbe.1 AF155114 XM_005248995 "CCDS55022|CCDS55023|CCDS55024" Q9UK97 "10531035|10531037" MGI:1918788 RGD:1310374 FBXO9 609091 +HGNC:13589 FBXO10 F-box protein 10 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 FBX10 F-box only protein 10 F-boxes other 560 2000-09-27 2004-06-15 2016-10-05 26267 ENSG00000147912 OTTHUMG00000019926 uc004aab.3 AF174598 XM_017014618 CCDS47966 Q9UK96 "10531035|10531037|19300908" MGI:2686937 RGD:1305465 FBXO10 609092 objectId:2655 +HGNC:13590 FBXO11 F-box protein 11 protein-coding gene gene with protein product Approved 2p16.3 02p16.3 "FBX11|UBR6" ubiquitin protein ligase E3 component n-recognin 6 F-box only protein 11 "F-boxes other|Ubiquitin protein ligase E3 component n-recognins" "560|785" 2000-09-27 2008-06-23 2008-06-23 2014-11-18 80204 ENSG00000138081 OTTHUMG00000129130 uc010fbl.3 AF174599 "NM_012167|NM_018693|NM_025133" "CCDS1837|CCDS54357" Q86XK2 "10531035|16487488|18162545" MGI:2147134 RGD:727935 FBXO11 607871 objectId:1260 +HGNC:13616 FBXO14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13617 FBXO15 F-box protein 15 protein-coding gene gene with protein product Approved 18q22.3 18q22.3 "MGC39671|FBX15" F-box only protein 15 F-boxes other 560 2003-12-05 2004-06-15 2014-11-19 201456 ENSG00000141665 OTTHUMG00000132842 uc002llf.3 AK094215 NM_152676 CCDS45884 Q8NCQ5 12665572 MGI:1354755 RGD:1310628 FBXO15 609093 +HGNC:13618 FBXO16 F-box protein 16 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 FBX16 F-box only protein 16 F-boxes other 560 2003-06-09 2004-06-15 2014-11-19 157574 ENSG00000214050 OTTHUMG00000102147 uc003xgu.5 AF453435 NM_172366 "CCDS6068|CCDS59099" Q8IX29 12243353 MGI:1354706 RGD:1305049 FBXO16 608519 +HGNC:18754 FBXO17 F-box protein 17 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FBG4|FLJ25205|MGC9379|FLJ11798|Fbx17" F-box only protein 26 FBXO26 F-box only protein 17 F-boxes other 560 2002-07-22 2004-06-16 2004-06-15 2015-09-11 115290 ENSG00000269190 OTTHUMG00000182718 uc002okg.3 AF386743 NM_024907 CCDS12526 Q96EF6 MGI:1354707 RGD:1308308 FBXO17 609094 +HGNC:13620 FBXO18 F-box protein, helicase, 18 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "FBH1|FLJ14590|Fbx18" F-box DNA helicase 1 F-box only protein 18 "F-boxes other|DNA helicases" "560|1167" 2003-06-09 2004-06-15 2016-05-05 84893 ENSG00000134452 OTTHUMG00000017609 uc001iis.5 AK095343 NM_032807 "CCDS7072|CCDS7073|CCDS73064" Q8NFZ0 "10531037|11956208" MGI:1354699 RGD:1306298 FBXO18 607222 +HGNC:13592 FBXO21 F-box protein 21 protein-coding gene gene with protein product Approved 12q24.22 12q24.22 "FBX21|KIAA0875" F-box only protein 21 F-boxes other 560 2000-09-27 2004-06-15 2016-10-05 23014 ENSG00000135108 OTTHUMG00000169495 uc001twk.4 AB020682 NM_033624 "CCDS9184|CCDS44989" O94952 "10048485|10531035" MGI:1924223 RGD:1307346 FBXO21 609095 +HGNC:13593 FBXO22 F-box protein 22 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "FBX22|FISTC1" FIST domain containing 1 F-box only protein 22 F-boxes other 560 2000-09-27 2004-06-15 2016-10-05 26263 ENSG00000167196 OTTHUMG00000142841 uc002bbk.4 AF174602 NM_147188 "CCDS10287|CCDS45310" Q8NEZ5 "10531035|10531037|17855421" MGI:1926014 RGD:1306664 FBXO22 609096 +HGNC:31025 FBXO22-AS1 FBXO22 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q24.2 15q24.2 "HsT18082|NCRNA00053|FISTC1OS" "non-protein coding RNA 53|FISTC1 opposite strand (non-protein coding)" FBXO22OS "FBXO22 opposite strand (non-protein coding)|FBXO22 antisense RNA 1 (non-protein coding)" 2006-01-17 2011-08-19 2012-08-15 2016-10-05 692224 AC027104 NR_003136 +HGNC:13595 FBXO24 F-box protein 24 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FBX24 F-box only protein 24 F-boxes other 560 2000-09-27 2004-06-15 2016-10-05 26261 ENSG00000106336 OTTHUMG00000159543 uc011kjz.2 AF174604 XM_017011961 "CCDS55138|CCDS5698|CCDS5699" O75426 "10531035|10531037" MGI:1918426 RGD:1305095 FBXO24 609097 +HGNC:13596 FBXO25 F-box protein 25 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 FBX25 F-box only protein 25 F-boxes other 560 2000-09-27 2004-06-15 2014-11-18 26260 ENSG00000147364 OTTHUMG00000090341 uc003wpb.3 AF174605 NM_012173 "CCDS5952|CCDS5953|CCDS5954" Q8TCJ0 "10531035|10531037" MGI:1914072 RGD:1359105 FBXO25 609098 +HGNC:18753 FBXO27 F-box protein 27 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "Fbg5|Fbx27" F-box only protein 27 F-boxes other 560 2002-07-22 2004-06-15 2015-09-01 126433 ENSG00000161243 OTTHUMG00000182719 uc002okh.5 AF436061 XM_017026290 CCDS12527 Q8NI29 126433 MGI:2685007 RGD:1563982 FBXO27 609099 +HGNC:29046 FBXO28 F-box protein 28 protein-coding gene gene with protein product Approved 1q42.11 01q42.11 "FLJ10766|KIAA0483|Fbx28|CENP-30" centromere protein 30 F-boxes other 560 2004-06-15 2016-10-05 23219 ENSG00000143756 OTTHUMG00000037495 uc001hoh.3 AK001628 NM_015176 "CCDS1539|CCDS44320" Q9NVF7 9455484 MGI:1261890 RGD:1304584 FBXO28 609100 +HGNC:15600 FBXO30 F-box protein 30 protein-coding gene gene with protein product Approved 6q24.3 06q24.3 "MGC21674|Fbx30" F-box only protein, helicase, 18 F-boxes other 560 2001-05-15 2004-06-15 2016-10-05 84085 ENSG00000118496 OTTHUMG00000015749 uc003qla.4 AF248640 XM_017011353 CCDS5208 Q8TB52 MGI:1919115 RGD:1359367 FBXO30 609101 +HGNC:16510 FBXO31 F-box protein 31 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 "FBX14|FBXO14|Fbx31|MGC15419" F-box only protein 31 F-boxes other 560 2001-09-12 2004-05-27 2016-10-05 79791 ENSG00000103264 OTTHUMG00000175685 uc002fjw.5 BC002985 NM_024735 "CCDS32501|CCDS73922" Q5XUX0 MGI:1354708 RGD:1561069 FBXO31 609102 410726 +HGNC:16731 FBXO32 F-box protein 32 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "MAFbx|ATROGIN1|Fbx32" F-box only protein 32 F-boxes other 560 2001-10-04 2004-06-15 2014-11-18 114907 ENSG00000156804 OTTHUMG00000164981 uc003yqr.4 AJ420108 NM_058229 "CCDS6345|CCDS56553" Q969P5 "11679633|11717410" MGI:1914981 RGD:620373 FBXO32 606604 +HGNC:19833 FBXO33 F-box protein 33 protein-coding gene gene with protein product Approved 14q21.1 14q21.1 Fbx33 F-box only protein 33 F-boxes other 560 2002-11-27 2004-06-15 2016-10-05 254170 ENSG00000165355 OTTHUMG00000140257 uc001wvk.4 BI460761 NM_203301 CCDS9677 Q7Z6M2 MGI:1917861 RGD:1307543 FBXO33 609103 +HGNC:20201 FBXO34 F-box protein 34 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 "FLJ20725|Fbx34" F-box only protein 34 F-boxes other 560 2003-01-08 2004-06-15 2016-10-05 55030 ENSG00000178974 OTTHUMG00000171033 uc001xbu.4 AK000732 XM_017021391 CCDS32086 Q9NWN3 MGI:1926188 RGD:1310108 FBXO34 609104 +HGNC:27020 FBXO36 F-box protein 36 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 "Fbx36|FLJ37592" F-box only protein 36 F-boxes other 560 2004-01-08 2004-06-15 2016-10-05 130888 ENSG00000153832 OTTHUMG00000133206 uc002vqa.4 BC033935 NM_174899 CCDS2472 Q8NEA4 12477932 MGI:1289192 RGD:1307870 FBXO36 609105 +HGNC:41489 FBXO36-IT1 FBXO36 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q36.3 02q36.3 FBXO36 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874344 ENSG00000231534 OTTHUMG00000153612 uc061thr.1 +HGNC:50363 FBXO36P1 F-box protein 36 pseudogene 1 pseudogene pseudogene Approved 17q24.2 17q24.2 2014-04-23 2014-04-23 732538 ENSG00000266117 OTTHUMG00000179785 NG_005697 PGOHUM00000237492 +HGNC:28844 FBXO38 F-box protein 38 protein-coding gene gene with protein product Approved 5q32 05q32 "MOKA|SP329|FLJ13962|Fbx38" F-boxes other 560 2004-06-15 2016-10-05 81545 ENSG00000145868 OTTHUMG00000129929 uc031slt.2 BC005873 NM_030793 "CCDS43384|CCDS64285" Q6PIJ6 12477932 MGI:2444639 RGD:1311505 FBXO38 608533 400617 +HGNC:28565 FBXO39 F-box protein 39 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MGC35179|Fbx39|CT144" F-boxes other 560 2004-06-15 2016-10-05 162517 ENSG00000177294 OTTHUMG00000102062 uc010vtg.3 BC034782 NM_153230 CCDS11082 Q8N4B4 12477932 MGI:3505735 RGD:1311464 FBXO39 609106 +HGNC:29816 FBXO40 F-box protein 40 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "KIAA1195|Fbx40" F-boxes other 560 2004-06-15 2016-10-05 51725 ENSG00000163833 OTTHUMG00000159410 uc003eeg.3 AF204674 NM_016298 CCDS33835 Q9UH90 10574462 MGI:2443753 RGD:1309781 FBXO40 609107 +HGNC:29409 FBXO41 F-box protein 41 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 "KIAA1940|Fbx41" F-boxes other 560 2004-06-15 2016-04-25 150726 ENSG00000163013 OTTHUMG00000164127 uc061kqf.1 AB075820 XM_017003421 CCDS46337 Q8TF61 11853319 MGI:1261912 RGD:1566130 FBXO41 609108 +HGNC:29249 FBXO42 F-box protein 42 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "KIAA1332|Fbx42" F-boxes other 560 2004-06-15 2016-10-05 54455 ENSG00000037637 OTTHUMG00000002218 uc001ayg.4 BC063864 XM_006710698 CCDS30613 Q6P3S6 10718198 MGI:1924992 RGD:1304787 FBXO42 609109 +HGNC:28521 FBXO43 F-box protein 43 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 Fbx43 F-boxes other 560 2004-06-15 2016-10-05 286151 ENSG00000156509 OTTHUMG00000164803 uc003yjd.4 BC028709 XM_209918 CCDS47904 Q4G163 MGI:1926053 RGD:1310225 FBXO43 609110 +HGNC:24847 FBXO44 F-box protein 44 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "FBX30|FBG3|MGC14140|Fbxo6a|Fbx44" F-boxes other 560 2004-06-15 2016-10-05 93611 ENSG00000132879 OTTHUMG00000002071 uc001asl.3 AY040878 NM_183412 "CCDS131|CCDS132|CCDS81261" Q9H4M3 12383498 MGI:1354744 RGD:1562463 FBXO44 609111 +HGNC:29148 FBXO45 F-box protein 45 protein-coding gene gene with protein product Approved 3q29 03q29 Fbx45 F-boxes other 560 2004-10-20 2014-11-18 200933 ENSG00000174013 OTTHUMG00000155571 uc010iai.4 AK025697 NM_001105573 CCDS46985 P0C2W1 MGI:2447775 RGD:1311861 FBXO45 609112 +HGNC:25069 FBXO46 F-box protein 46 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "20D7-FC4|Fbx46" FBXO34L F-box only protein 34-like F-boxes other 560 2004-02-11 2004-06-16 2004-06-15 2016-10-05 23403 ENSG00000177051 OTTHUMG00000182132 uc002pcz.4 BC021978 XM_371179 CCDS46116 Q6PJ61 9585442 MGI:2444918 RGD:1308393 FBXO46 609117 +HGNC:31969 FBXO47 F-box protein 47 protein-coding gene gene with protein product Approved 17q12 17q12 F-boxes other 560 2007-08-20 2014-11-18 494188 ENSG00000204952 OTTHUMG00000178945 uc002hrc.2 NM_001008777 CCDS32639 Q5MNV8 15723337 MGI:1920223 RGD:1559709 FBXO47 609498 +HGNC:33857 FBXO48 F-box protein 48 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 F-boxes other 560 2008-05-07 2014-11-19 554251 ENSG00000204923 OTTHUMG00000152585 uc002seo.5 BC089423 NM_001024680 CCDS33213 Q5FWF7 MGI:2442569 RGD:1309073 FBXO48 +HGNC:13608 FBXW2 F-box and WD repeat domain containing 2 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "FBW2|Md6|Fwd2" F-box and WD-40 domain protein 2 "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 2000-09-27 2007-02-08 2016-10-05 26190 ENSG00000119402 OTTHUMG00000020576 uc004bkm.2 AF129531 XM_006717049 CCDS43872 Q9UKT8 "10531035|10828603" MGI:1353435 RGD:1310460 FBXW2 609071 +HGNC:10847 FBXW4 F-box and WD repeat domain containing 4 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "Fbw4|dactylin" SHFM3 "split hand/foot malformation (ectrodactyly) type 3|F-box and WD-40 domain protein 4" "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 1994-09-26 2005-03-12 2007-02-08 2016-10-05 6468 ENSG00000107829 OTTHUMG00000018938 uc001kto.4 AF281859 NM_022039 CCDS31271 P57775 "8723077|7912888" MGI:1354698 RGD:1306518 FBXW4 608071 +HGNC:13609 FBXW4P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudogene pseudogene Approved 22q11.23 22q11.23 FBW3 "FBXW3|SHFM3P1" "F-box and WD-40 domain protein 3|split hand/foot malformation (ectrodactyly) type 3 pseudogene 1" 2000-09-27 2008-08-20 2008-08-20 2016-07-22 26226 ENSG00000230701 OTTHUMG00000030931 AF174606 NR_033408 "10531035|10531037" PGOHUM00000297709 +HGNC:13613 FBXW5 F-box and WD repeat domain containing 5 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "DKFZP434B205|MGC20962|Fbw5" F-box and WD-40 domain protein 5 "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 2003-06-09 2007-02-08 2014-11-19 54461 ENSG00000159069 OTTHUMG00000020967 uc004cjx.4 BC014130 NM_018998 CCDS7014 Q969U6 MGI:1354731 RGD:1305661 FBXW5 609072 +HGNC:16712 FBXW7 F-box and WD repeat domain containing 7 protein-coding gene gene with protein product Approved 4q31.23 04q31.23 "AGO|FLJ11071|SEL-10|SEL10|FBW7|FBX30|CDC4|FBXW6" archipelago homolog (Drosophila) "F-box and WD-40 domain protein 7 (archipelago homolog, Drosophila)|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase" "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 2001-12-20 2015-11-20 2015-11-20 55294 ENSG00000109670 OTTHUMG00000185246 uc003imt.4 AF411971 XM_017008362 "CCDS3777|CCDS3778|CCDS34078|CCDS64082" Q969H0 "10531037|11425854" MGI:1354695 RGD:2321145 FBXW7 606278 +HGNC:13597 FBXW8 F-box and WD repeat domain containing 8 protein-coding gene gene with protein product Approved 12q24.22 12q24.22 "FBX29|FBW6|FBW8" FBXO29 "F-box only protein 29|F-box and WD-40 domain protein 8" "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 2000-09-27 2003-06-13 2007-02-08 2015-08-25 26259 ENSG00000174989 OTTHUMG00000169329 uc001twg.2 AF176707 NM_012174 "CCDS9182|CCDS44988" Q8N3Y1 "10531035|10531037" MGI:1923041 RGD:1306032 FBXW8 609073 +HGNC:28136 FBXW9 F-box and WD repeat domain containing 9 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "MGC10870|Fbw9" F-box and WD-40 domain protein 9 "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 2004-06-15 2007-02-08 2016-10-05 84261 ENSG00000132004 OTTHUMG00000150152 uc002mum.2 BC004290 NM_032301 CCDS12278 Q5XUX1 12477932 MGI:1915878 RGD:1307002 FBXW9 609074 +HGNC:1211 FBXW10 F-box and WD repeat domain containing 10 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "SM2SH2|HREP|Fbw10" "C17orf1|C17orf1A" "chromosome 17 open reading frame 1A|F-box and WD-40 domain protein 10" "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 1998-08-06 2004-07-21 2007-02-08 2016-10-05 10517 ENSG00000171931 OTTHUMG00000059048 uc002guk.4 BC028364 NM_031456 "CCDS11199|CCDS58524" Q5XX13 "9787083|7586531" MGI:3052463 RGD:1563889 FBXW10 611679 +HGNC:13607 FBXW11 F-box and WD repeat domain containing 11 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "KIAA0696|Fbw1b|BTRCP2|BTRC2|Hos|Fbw11" FBXW1B "F-box and WD-40 domain protein 1B|F-box and WD-40 domain protein 11" "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 2000-09-27 2004-06-16 2007-02-08 2015-09-11 23291 ENSG00000072803 OTTHUMG00000163267 uc003mbl.2 AB014596 NM_012300 "CCDS34289|CCDS47340|CCDS47341" Q9UKB1 "10531035|10694485" MGI:2144023 RGD:1309121 FBXW11 605651 +HGNC:1145 FBXW11P1 F-box and WD repeat domain containing 11 pseudogene 1 pseudogene pseudogene Approved 21q22.11 21q22.11 "F-box and WD-40 domain protein 1B pseudogene|beta-transducin repeat containing 2, pseudogene" "BTRC2P|FBXW1BP1|FBXW1BP" "F-box and WD-40 domain protein 1B pseudogene 1|F-box and WD-40 domain protein 11 pseudogene 1" 2000-05-23 2004-06-16 2007-02-08 2012-05-22 54099 ENSG00000230870 OTTHUMG00000084868 NG_000930 PGOHUM00000239065 +HGNC:20729 FBXW12 F-box and WD repeat domain containing 12 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 Fbw12 FBXO35 "F-box only protein 35|F-box and WD-40 domain protein 12" "WD repeat domain containing|F-box and WD repeat domain containing" "362|559" 2003-04-04 2004-07-21 2007-02-08 2015-09-11 285231 ENSG00000164049 OTTHUMG00000133530 uc003csr.3 "AK097594|AY247969" NM_207102 "CCDS2764|CCDS54577|CCDS54578" Q6X9E4 15040455 "MGI:2443323|MGI:2443324|MGI:3505590|MGI:3505701|MGI:3505704|MGI:3505706|MGI:3584372|MGI:3588266|MGI:3643290|MGI:3646659|MGI:3646662|MGI:3779847|MGI:1354703" RGD:1307859 FBXW12 609075 +HGNC:24692 FCAMR Fc fragment of IgA and IgM receptor protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "FKSG87|FCA/MR|CD351" Fc receptor, IgA, IgM, high affinity "CD molecules|V-set domain containing" "471|590" 2005-06-03 2016-01-21 2016-01-21 83953 ENSG00000162897 OTTHUMG00000036579 uc001hfb.3 AF354295 NM_032029 "CCDS41460|CCDS53468" Q8WWV6 11779189 MGI:1927803 RGD:1584674 FCAMR 605484 +HGNC:3608 FCAR Fc fragment of IgA receptor protein-coding gene gene with protein product Approved 19q13.42 19q13.42 CD89 Fc fragment of IgA, receptor for "CD molecules|Immunoglobulin like domain containing" "471|594" 1991-06-06 2015-04-24 2015-04-24 2204 ENSG00000186431 OTTHUMG00000065936 uc002qhr.3 X54150 NM_002000 "CCDS12907|CCDS12908|CCDS12909|CCDS12910|CCDS42622|CCDS42623|CCDS42624|CCDS42625" P24071 1577457 RGD:1303082 FCAR 147045 I43.951 CD89 +HGNC:3609 FCER1A Fc fragment of IgE receptor Ia protein-coding gene gene with protein product Approved 1q23.2 01q23.2 Fc epsilon receptor Ia FCE1A Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide Immunoglobulin like domain containing 594 1989-06-30 2016-01-13 2016-10-05 2205 ENSG00000179639 OTTHUMG00000037176 uc001ftq.4 BC015195 NM_002001 CCDS1184 P12319 8245459 MGI:95494 RGD:2597 FCER1A 147140 +HGNC:3611 FCER1G Fc fragment of IgE receptor Ig protein-coding gene gene with protein product Approved 1q23.3 01q23.3 Fc epsilon receptor Ig Fc fragment of IgE, high affinity I, receptor for; gamma polypeptide 1990-08-15 2016-01-13 2016-10-05 2207 ENSG00000158869 OTTHUMG00000034343 uc001fyz.1 NM_004106 CCDS1225 P30273 2138619 MGI:95496 RGD:2599 FCER1G 147139 +HGNC:3612 FCER2 Fc fragment of IgE receptor II protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "CLEC4J|CD23" Fc epsilon receptor II "CD23A|FCE2" "Fc fragment of IgE, low affinity II, receptor for (CD23A)|Fc fragment of IgE, low affinity II, receptor for (CD23)" "CD molecules|C-type lectin domain family|C-type lectin domain containing" "471|494|1298" 1988-08-05 2016-01-13 2016-10-05 2208 ENSG00000104921 OTTHUMG00000182517 uc002mhm.3 M15059 NM_002002 CCDS12184 P06734 MGI:95497 RGD:619997 FCER2 151445 CD23 +HGNC:20220 FCF1 FCF1 rRNA-processing protein protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "CGI-35|Bka|UTP24" C14orf111 "chromosome 14 open reading frame 111|FCF1 small subunit (SSU) processome component homolog (S. cerevisiae)" 2003-01-15 2007-01-30 2013-05-03 2016-10-05 51077 ENSG00000119616 OTTHUMG00000171480 uc001xqh.4 AF132969 NM_015962 "CCDS9832|CCDS81827" Q9Y324 16762320 MGI:1920986 RGD:1310899 FCF1 +HGNC:44613 FCF1P1 FCF1 pseudogene 1 pseudogene pseudogene Approved 7p15.3 07p15.3 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 1 2012-11-20 2013-06-10 2013-06-10 100422533 ENSG00000227436 OTTHUMG00000152690 NG_026543 PGOHUM00000233151 +HGNC:44614 FCF1P2 FCF1 pseudogene 2 pseudogene pseudogene Approved 3p21.31 03p21.31 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 2 2012-11-20 2013-06-10 2013-06-10 101060195 ENSG00000228638 OTTHUMG00000156835 NR_134638 PGOHUM00000237620 +HGNC:44615 FCF1P3 FCF1 pseudogene 3 pseudogene pseudogene Approved 3q13.12 03q13.12 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 3 2012-11-20 2013-06-10 2013-06-10 100128733 ENSG00000239997 OTTHUMG00000159139 NG_022263 PGOHUM00000238123 +HGNC:44616 FCF1P4 FCF1 pseudogene 4 pseudogene pseudogene Approved Xq23 Xq23 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 4 2012-11-20 2013-06-10 2014-10-22 106480799 ENSG00000226112 OTTHUMG00000022200 NG_045738 PGOHUM00000305252 +HGNC:44617 FCF1P5 FCF1 pseudogene 5 pseudogene pseudogene Approved 6q21 06q21 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 5 2012-11-20 2013-06-10 2013-06-10 106479045 ENSG00000220392 OTTHUMG00000015373 NG_044459 PGOHUM00000243741 +HGNC:44618 FCF1P6 FCF1 pseudogene 6 pseudogene pseudogene Approved 1p32.3 01p32.3 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 6 2012-11-20 2013-06-10 2013-06-10 100422535 ENSG00000225671 OTTHUMG00000007883 NG_026937 PGOHUM00000244021 +HGNC:44619 FCF1P7 FCF1 pseudogene 7 pseudogene pseudogene Approved 1q43 01q43 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 7 2012-11-20 2013-06-10 2013-06-10 100422536 ENSG00000224727 OTTHUMG00000039997 NG_027055 PGOHUM00000244521 +HGNC:44620 FCF1P8 FCF1 pseudogene 8 pseudogene pseudogene Approved 4q12 04q12 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 8 2012-11-20 2013-06-10 2013-06-10 100422531 ENSG00000251111 OTTHUMG00000160653 NG_025107 PGOHUM00000245537 +HGNC:44621 FCF1P9 FCF1 pseudogene 9 pseudogene pseudogene Approved Xq21.2 Xq21.2 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 9 2012-11-20 2013-06-10 2013-06-10 106480444 ENSG00000231478 OTTHUMG00000021943 NG_045440 PGOHUM00000241882 +HGNC:44622 FCF1P10 FCF1 pseudogene 10 pseudogene pseudogene Approved 6q21 06q21 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 10 2012-11-20 2013-06-10 2013-06-10 106479046 ENSG00000218490 OTTHUMG00000015395 NG_044467 PGOHUM00000261922 +HGNC:44623 FCF1P11 FCF1 pseudogene 11 pseudogene pseudogene Approved 7q34 07q34 FCF1 small subunit (SSU) processome component homolog (S. cerevisiae) pseudogene 11 2012-11-20 2013-06-10 2013-06-10 100132310 NG_022549 PGOHUM00000261928 +HGNC:13572 FCGBP Fc fragment of IgG binding protein protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FC(GAMMA)BP "IgG Fc binding protein|Human Fc gamma BP" 2000-09-26 2015-02-03 8857 ENSG00000275395 OTTHUMG00000182580 uc060ynu.1 D84239 NM_003890 Q9Y6R7 9182547 MGI:2444336 RGD:2313189 FCGBP I08.954 +HGNC:3613 FCGR1A Fc fragment of IgG receptor Ia protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "CD64|CD64A" Fc gamma receptor Ia "Fc fragment of IgG, high affinity Ia, receptor for (CD64)|Fc fragment of IgG, high affinity Ia, receptor (CD64)" "CD molecules|Immunoglobulin like domain containing" "471|594" 1992-12-03 2016-01-13 2016-10-12 2209 ENSG00000150337 OTTHUMG00000012089 uc001esp.5 BC032634 NM_000566 CCDS933 P12314 "8697799|9763663" MGI:95498 RGD:1309912 "FCGR1Abase: Mutation registry for CD64 deficiency|http://structure.bmc.lu.se/idbase/FCGR1Abase/|LRG_59|http://www.lrg-sequence.org/LRG/LRG_59" FCGR1A 146760 CD64A +HGNC:3614 FCGR1B Fc fragment of IgG receptor Ib protein-coding gene gene with protein product Approved 1p11.2 01p11.2 CD64b Fc gamma receptor Ib "Fc fragment of IgG, high affinity Ib, receptor for (CD64)|Fc fragment of IgG, high affinity Ib, receptor (CD64)" Immunoglobulin like domain containing 594 1992-12-03 2016-01-13 2016-01-13 2210 ENSG00000198019 OTTHUMG00000040903 uc031upu.2 NM_001017986 "CCDS72844|CCDS72845|CCDS72846" Q92637 "8697799|9763663" FCGR1B 601502 +HGNC:3615 FCGR1CP Fc fragment of IgG receptor Ic, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 CD64c FCGR1C "Fc fragment of IgG, high affinity Ic, receptor for (CD64)|Fc fragment of IgG, high affinity Ic, receptor (CD64)|Fc fragment of IgG, high affinity Ic, receptor (CD64), pseudogene" Immunoglobulin like domain containing 594 1992-12-03 2016-01-13 2016-01-13 2016-01-13 100132417 ENSG00000265531 OTTHUMG00000156231 NR_027484 A6NKC4 "8697799|9763663" 601503 PGOHUM00000251132 +HGNC:3616 FCGR2A Fc fragment of IgG receptor IIa protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "CD32|CD32A|IGFR2|CDw32" "Immunoglobulin G Fc receptor II|Fc gamma receptor IIa" "FCG2|FCGR2A1|FCGR2" "Fc fragment of IgG, low affinity IIa, receptor for (CD32)|Fc fragment of IgG, low affinity IIa, receptor (CD32)" "CD molecules|Immunoglobulin like domain containing" "471|594" 1988-11-30 2016-01-13 2016-10-05 2212 ENSG00000143226 OTTHUMG00000034469 uc001gam.4 J03619 NM_021642 "CCDS30922|CCDS44264" P12318 2139735 MGI:95500 RGD:71069 FCGR2A 146790 CD32A +HGNC:3618 FCGR2B Fc fragment of IgG receptor IIb protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "CD32|CD32B" Fc gamma receptor IIb "FCG2|FCGR2" "Fc fragment of IgG, low affinity IIb, receptor for (CD32)|Fc fragment of IgG, low affinity IIb, receptor (CD32)" "CD molecules|Immunoglobulin like domain containing" "471|594" 1991-08-21 2016-01-13 2016-10-05 2213 ENSG00000072694 OTTHUMG00000034470 uc001gaz.3 BC031992 NM_004001 "CCDS30924|CCDS30925|CCDS53414" P31994 2139735 MGI:95499 RGD:631331 FCGR2B 604590 322120 CD32B +HGNC:15626 FCGR2C Fc fragment of IgG receptor IIc (gene/pseudogene) protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "hFcRII-C|CD32C" Fc gamma receptor IIc "Fc fragment of IgG, low affinity IIc, receptor for (CD32)|Fc fragment of IgG, low affinity IIc, receptor for (CD32) (gene/pseudogene)" CD molecules 471 2005-06-24 2016-01-13 2016-10-05 9103 ENSG00000244682 OTTHUMG00000074101 uc057msv.1 X17653 NM_201563 P31995 2531080 FCGR2C 612169 CD32C +HGNC:3619 FCGR3A Fc fragment of IgG receptor IIIa protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "CD16|CD16a" Fc gamma receptor IIIa "FCGR3|FCG3" "Fc fragment of IgG, low affinity IIIa, receptor for (CD16)|Fc fragment of IgG, low affinity IIIa, receptor (CD16a)" "CD molecules|Immunoglobulin like domain containing" "471|594" 1988-11-30 2016-01-13 2016-10-12 2214 ENSG00000203747 OTTHUMG00000034466 uc009wui.4 BC036723 NM_000569 "CCDS1232|CCDS44266" P08637 2139735 MGI:2179523 RGD:1303067 "FCGR3Abase: Mutation registry for Natural killer cell deficiency|http://structure.bmc.lu.se/idbase/FCGR3Abase/|LRG_60|http://www.lrg-sequence.org/LRG/LRG_60" FCGR3A 146740 443014 CD16a +HGNC:3620 FCGR3B Fc fragment of IgG receptor IIIb protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "CD16|CD16b" Fc gamma receptor IIIb "FCGR3|FCG3" "Fc fragment of IgG, low affinity IIIb, receptor for (CD16)|Fc fragment of IgG, low affinity IIIb, receptor (CD16b)" "CD molecules|Immunoglobulin like domain containing" "471|594" 1991-08-21 2016-01-13 2016-10-05 2215 ENSG00000162747 OTTHUMG00000074099 uc021pdo.2 J04162 NM_000570 "CCDS41433|CCDS58040|CCDS72960|CCDS72961" O75015 2139735 MGI:2179523 FCGR3B 610665 159574 CD16b +HGNC:3621 FCGRT Fc fragment of IgG receptor and transporter protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "FCRN|alpha-chain" "heavy chain of the major histocompatibility complex class I-like Fc receptor|transmembrane alpha chain of the neonatal receptor" Fc fragment of IgG, receptor, transporter, alpha C1-set domain containing 591 1995-08-23 2016-01-13 2016-10-05 2217 ENSG00000104870 OTTHUMG00000183155 uc002poe.3 U12255 XM_011526627 CCDS12770 P55899 "7964511|8646894" MGI:103017 RGD:61811 FCGRT 601437 +HGNC:29002 FCHO1 FCH domain only 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 KIAA0290 F-BAR domain containing 1288 2004-01-08 2016-10-05 23149 ENSG00000130475 OTTHUMG00000183293 uc060vlv.1 AB006628 NM_015122 "CCDS32955|CCDS59365|CCDS59366" O14526 12477932 MGI:1921265 RGD:1307683 FCHO1 613437 +HGNC:25180 FCHO2 FCH domain only 2 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 F-BAR domain containing 1288 2004-07-16 2015-08-25 115548 ENSG00000157107 OTTHUMG00000162413 uc003kcl.3 AL831971 XM_291142 "CCDS47230|CCDS54868" Q0JRZ9 15254787 MGI:3505790 RGD:1565396 FCHO2 613438 +HGNC:25463 FCHSD1 FCH and double SH3 domains 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 FLJ00007 F-BAR domain containing 1288 2004-04-14 2015-08-25 89848 ENSG00000197948 OTTHUMG00000163762 uc003llk.3 AK027281 NM_033449 CCDS47295 Q86WN1 "11214971|15067381" MGI:2441771 RGD:1308240 FCHSD1 +HGNC:29114 FCHSD2 FCH and double SH3 domains 2 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 KIAA0769 SH3MD3 SH3 multiple domains 3 F-BAR domain containing 1288 2004-01-08 2004-04-16 2004-04-14 2016-10-05 9873 ENSG00000137478 OTTHUMG00000153082 uc009ytl.4 AB018312 NM_014824 CCDS8218 O94868 "9872452|15067381" MGI:2448475 RGD:1304812 FCHSD2 +HGNC:14315 FCMR Fc fragment of IgM receptor protein-coding gene gene with protein product Approved 1q32.1 01q32.1 TOSO FAIM3 Fas apoptotic inhibitory molecule 3 Immunoglobulin like domain containing 594 2005-04-04 2015-04-24 2015-04-24 2015-04-24 9214 ENSG00000162894 OTTHUMG00000036457 AF057557 NM_005449 "CCDS1473|CCDS44304|CCDS53467" O60667 "9586636|1563211|25888699" MGI:1916419 RGD:1359282 606015 +HGNC:37158 FCMTE1 familial cortical myoclonic tremor with epilepsy 1 phenotype phenotype only Approved 8q24 08q24 "BAFME1|FAME1" "benign adult familial myoclonic epilepsy 1|familial adult myoclonic epilepsy 1" 2009-08-03 2009-11-11 50968 10441581 601068 +HGNC:37159 FCMTE2 familial cortical myoclonic tremor with epilepsy 2 phenotype phenotype only Approved 2p11.1-q12.2 02p11.1-q12.2 "BAFME2|FAME2|ADCME" "benign adult familial myoclonic epilepsy 2|familial adult myoclonic epilepsy 2|cortical myoclonus and epilepsy, autosomal dominant" 2009-08-03 2009-11-11 554188 11701600 +HGNC:37160 FCMTE3 familial cortical myoclonic tremor with epilepsy 3 phenotype phenotype only Approved 5p15.31-p15 05p15.31-p15 "BAFME|FAME" 2009-08-03 2011-03-18 20548044 +HGNC:3623 FCN1 ficolin 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 FCNM "ficolin (collagen/fibrinogen domain-containing) 1|ficolin (collagen/fibrinogen domain containing) 1" Fibrinogen C domain containing 554 1996-07-11 2015-11-27 2016-10-05 2219 ENSG00000085265 OTTHUMG00000020895 uc004cfi.4 D83920 NM_002003 CCDS6985 O00602 "8573080|8884275" MGI:1341158 RGD:621222 FCN1 601252 +HGNC:3624 FCN2 ficolin 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "P35|FCNL|EBP-37|ficolin-2" "hucolin|collagen/fibrinogen domain-containing protein 2|ficolin B|serum lectin p35|L-ficolin" "ficolin (collagen/fibrinogen domain-containing lectin) 2 (hucolin)|ficolin (collagen/fibrinogen domain containing lectin) 2" Fibrinogen C domain containing 554 1996-07-11 2015-11-27 2016-10-05 2220 ENSG00000160339 OTTHUMG00000020892 uc004cfg.1 D49353 NM_004108 CCDS6983 Q15485 8884275 MGI:1341158 FCN2 601624 +HGNC:3625 FCN3 ficolin 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "FCNH|HAKA1" Hakata antigen "ficolin (collagen/fibrinogen domain-containing) 3 (Hakata antigen)|ficolin (collagen/fibrinogen domain containing) 3" Fibrinogen C domain containing 554 1999-12-10 2015-11-27 2016-10-12 8547 ENSG00000142748 OTTHUMG00000005722 uc001boa.4 D88587 NM_003665 "CCDS300|CCDS301" O75636 "9694814|10330454" RGD:9301596 LRG_171|http://www.lrg-sequence.org/LRG/LRG_171 FCN3 604973 332191 +HGNC:3627 FCP1 F-cell production 1 phenotype phenotype only Approved Xp22.2 Xp22.2 "FCPX|HBFQTL3" 1994-12-14 2014-02-04 2221 2461753 305435 +HGNC:3626 FCP entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:18509 FCRL1 Fc receptor like 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "FCRH1|IRTA5|IFGP1|CD307a" Fc receptor-like 1 "CD molecules|Immunoglobulin like domain containing" "471|594" 2005-03-22 2016-01-21 2016-10-05 115350 ENSG00000163534 OTTHUMG00000019398 uc001frg.4 BC033690 NM_052938 "CCDS1170|CCDS53382|CCDS53383" Q96LA6 "11493702|11929751" MGI:2442862 RGD:1589411 FCRL1 606508 +HGNC:14875 FCRL2 Fc receptor like 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "FCRH2|IRTA4|CD307b" SPAP1 "SH2 domain-containing phosphatase anchor protein 1|Fc receptor-like 2" "CD molecules|Immunoglobulin like domain containing" "471|594" 2001-04-06 2005-03-23 2016-01-21 2016-01-21 79368 ENSG00000132704 OTTHUMG00000019399 uc001fre.3 AF319438 NM_030764 CCDS1168 Q96LA5 11162587 RGD:1306885 FCRL2 606509 +HGNC:18506 FCRL3 Fc receptor like 3 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "FCRH3|IRTA3|IFGP3|SPAP2a|SPAP2|SPAP2b|SPAP2c|SPAP2d|SPAP2e|CD307c" Fc receptor-like 3 "CD molecules|Immunoglobulin like domain containing" "471|594" 2005-03-22 2016-01-21 2016-10-05 115352 ENSG00000160856 OTTHUMG00000019400 uc001frb.4 AF459027 NM_052939 "CCDS1167|CCDS81385" Q96P31 "11493702|12014205" FCRL3 606510 +HGNC:18507 FCRL4 Fc receptor like 4 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "FCRH4|IRTA1|IGFP2|CD307d" Fc receptor-like 4 "CD molecules|Immunoglobulin like domain containing" "471|594" 2005-03-22 2016-01-21 2016-10-05 83417 ENSG00000163518 OTTHUMG00000035488 uc001fqw.3 AF343661 NM_031282 CCDS1166 Q96PJ5 "11290337|11493702" FCRL4 605876 +HGNC:18508 FCRL5 Fc receptor like 5 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "FCRH5|IRTA2|BXMAS1|CD307e" Fc receptor-like 5 "CD molecules|Immunoglobulin like domain containing" "471|594" 2005-03-22 2016-01-21 2016-10-05 83416 ENSG00000143297 OTTHUMG00000017481 uc001fqu.3 AF369794 NM_031281 CCDS1165 Q96RD9 "11027651|11290337" MGI:3053558 RGD:1589379 FCRL5 605877 +HGNC:31910 FCRL6 Fc receptor like 6 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "IFGP6|FLJ16056|FcRH6" Fc receptor-like 6 Immunoglobulin like domain containing 594 2005-03-31 2016-01-21 2016-01-21 343413 ENSG00000181036 OTTHUMG00000035351 uc001fud.5 AK131201 NM_001004310 "CCDS30912|CCDS60312" Q6DN72 MGI:3618339 RGD:1563939 FCRL6 613562 +HGNC:49448 FCRL6P1 Fc receptor like 6 pseudogene 1 pseudogene pseudogene Approved 1q23.2 01q23.2 Fc receptor-like 6 pseudogene 1 2013-12-03 2016-01-21 2016-01-21 100419077 NG_027004 PGOHUM00000244306 +HGNC:18504 FCRLA Fc receptor like A protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "MGC4595|FCRLc2|FCRLb|FCRLc1|FCRLd|FCRLe|FCRL|FCRLa|FREB|FCRLX" FCRLM1 "Fc receptor-like and mucin-like 1|Fc receptor-like A" Immunoglobulin like domain containing 594 2005-05-10 2006-09-26 2016-01-21 2016-01-21 84824 ENSG00000132185 OTTHUMG00000034537 uc001gbd.4 AF531423 NM_032738 "CCDS30926|CCDS53415|CCDS53416|CCDS53417|CCDS53418|CCDS53419|CCDS53420" Q7L513 11754007 MGI:2138647 RGD:1306176 FCRLA 606891 +HGNC:26431 FCRLB Fc receptor like B protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "FLJ31052|FCRL2|FREB-2|FCRLY" FCRLM2 "Fc receptor-like and mucin-like 2|Fc receptor-like B" Immunoglobulin like domain containing 594 2005-05-10 2006-09-26 2016-01-21 2016-01-21 127943 ENSG00000162746 OTTHUMG00000133629 uc001gbh.4 AY670683 NM_152378 "CCDS30927|CCDS72962|CCDS72963|CCDS72964|CCDS72965" Q6BAA4 15676285 MGI:3576487 RGD:1563018 FCRLB 609251 +HGNC:19215 FDCSP follicular dendritic cell secreted protein protein-coding gene gene with protein product Approved 4q13.3 04q13.3 FDC-SP C4orf7 chromosome 4 open reading frame 7 2002-09-17 2011-12-12 2011-12-12 2016-10-05 260436 ENSG00000181617 OTTHUMG00000129393 uc003hfd.4 AF435080 NM_152997 CCDS3537 Q8NFU4 "12193705|17548624|20811673" RGD:1359468 607241 +HGNC:3629 FDFT1 farnesyl-diphosphate farnesyltransferase 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 squalene synthase 1993-07-26 2016-10-05 2222 ENSG00000079459 OTTHUMG00000090801 uc033bcg.2 X69141 XM_017013217 "CCDS5985|CCDS75696|CCDS75697" P37268 MGI:102706 RGD:61834 FDFT1 184420 objectId:645 2.5.1.21 +HGNC:3631 FDPS farnesyl diphosphate synthase protein-coding gene gene with protein product Approved 1q22 01q22 farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase 1992-03-13 2010-06-24 2014-11-19 2224 ENSG00000160752 OTTHUMG00000013909 uc001fkc.3 J05262 NM_002004 "CCDS1110|CCDS44241|CCDS72940" P14324 1968462 MGI:104888 RGD:68953 FDPS 134629 444574 objectId:644 "2.5.1.1|2.5.1.10" +HGNC:3632 FDPSP1 farnesyl diphosphate synthase pseudogene 1 pseudogene pseudogene Approved 1q31.1 01q31.1 "CHR39A|FPSL1|FDPSL1" farnesyl diphosphate synthase-like 1 (farnesyl pyrophosphate synthetase-like 1, cholesterol-repressible protein 39A) 1989-09-25 2010-10-12 2010-10-12 2016-10-05 343332 ENSG00000225462 OTTHUMG00000035481 NG_005667 2613235 PGOHUM00000245125 +HGNC:3633 FDPSP2 farnesyl diphosphate synthase pseudogene 2 pseudogene pseudogene Approved 7q11.23 07q11.23 TCAG_1641456 "FPSL2|FDPSL2|FDPSL2A" "farnesyl diphosphate synthase-like 2 (farnesyl pyrophosphate synthetase-like 2)|farnesyl diphosphate synthase-like 2A (farnesyl pyrophosphate synthetase-like 2A)" 1989-09-25 2010-10-12 2010-10-12 2014-11-19 619190 ENSG00000233980 OTTHUMG00000155850 NR_003262 2613235 +HGNC:3634 FDPSP3 farnesyl diphosphate synthase pseudogene 3 pseudogene pseudogene Approved 14q22.2 14q22.2 "FPSL3|FDPSL3" farnesyl diphosphate synthase-like 3 (farnesyl pyrophosphate synthetase-like 3) 1989-09-25 2010-10-12 2010-10-12 2014-11-19 2227 ENSG00000258872 OTTHUMG00000171028 NG_005795 2613235 PGOHUM00000247804 +HGNC:3635 FDPSP4 farnesyl diphosphate synthase pseudogene 4 pseudogene pseudogene Approved 15q15.2 15q15.2 "FPSL4|CHR39B|FDPSL4" "cholesterol-repressible protein 39B|farnesyl diphosphate synthase-like 4 (farnesyl pyrophosphate synthetase-like 4)" 1989-09-25 2010-10-13 2010-10-13 2014-11-19 2228 ENSG00000254793 OTTHUMG00000166826 NG_007445 2613235 PGOHUM00000246763 +HGNC:3636 FDPSP5 farnesyl diphosphate synthase pseudogene 5 pseudogene pseudogene Approved Xp11.3 Xp11.3 farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase) (FDPS) pseudogene "FPSL5|CHR39C|FDPSL5" "cholesterol-repressible protein 39C|farnesyl diphosphate synthase-like 5 (farnesyl pyrophosphate synthetase-like 5)|farnesyl diphosphate synthase-like 5 (farnesyl pyrophosphate synthetase-like 5) pseudogene" 1989-09-25 2010-10-13 2010-10-13 2016-10-05 2229 ENSG00000215035 OTTHUMG00000021395 NG_007446 2613235 PGOHUM00000241255 +HGNC:3637 FDPSP6 farnesyl diphosphate synthase pseudogene 6 pseudogene pseudogene Approved 21q21.1 21q21.1 FDPSP farnesyl diphosphate synthase pseudogene 2000-05-23 2010-10-12 2010-10-12 2014-11-19 54051 ENSG00000233676 OTTHUMG00000078059 NG_000923 PGOHUM00000239153 +HGNC:33487 FDPSP7 farnesyl diphosphate synthase pseudogene 7 pseudogene pseudogene Approved 7q11.23 07q11.23 FDPSL2B farnesyl diphosphate synthase-like 2B (farnesyl pyrophosphate synthetase-like 2B) 2007-08-02 2010-10-13 2010-10-13 2010-10-13 441261 ENSG00000231087 OTTHUMG00000155799 NG_009609 PGOHUM00000232893 +HGNC:39085 FDPSP8 farnesyl diphosphate synthase pseudogene 8 pseudogene pseudogene Approved 1q32.3 01q32.3 2010-10-13 2010-10-13 401981 ENSG00000224763 OTTHUMG00000037004 NG_008746 PGOHUM00000244411 +HGNC:39086 FDPSP9 farnesyl diphosphate synthase pseudogene 9 pseudogene pseudogene Approved 15q25.1 15q25.1 2010-10-13 2010-10-13 401822 NG_008747 PGOHUM00000247198 +HGNC:39087 FDPSP10 farnesyl diphosphate synthase pseudogene 10 pseudogene pseudogene Approved 15q15.2 15q15.2 2010-10-13 2011-01-12 100190987 NG_008745 PGOHUM00000246765 +HGNC:3638 FDX1 ferredoxin 1 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 ADX adrenodoxin FDX 1988-05-11 2014-11-19 2230 ENSG00000137714 OTTHUMG00000166589 uc001pkx.4 M23668 NM_004109 CCDS8344 P10109 2969697 MGI:103224 RGD:62036 FDX1 103260 +HGNC:3640 FDX1P1 ferredoxin 1 pseudogene 1 pseudogene pseudogene Approved 20q11.22 20q11.22 "ADXP1|FDXP1" ferredoxin pseudogene 1 1988-05-11 2009-12-02 2009-12-02 2011-05-19 2231 ENSG00000181741 OTTHUMG00000032297 M34787 NG_001117 "2969697|2340092" PGOHUM00000247519 +HGNC:3641 FDX1P2 ferredoxin 1 pseudogene 2 pseudogene pseudogene Approved 21q21.3 21q21.3 FDXP2 ferredoxin pseudogene 2 1991-08-19 2009-12-02 2009-12-02 2011-02-24 2216 ENSG00000227054 OTTHUMG00000078440 M34789 NG_001116 2340092 PGOHUM00000239159 +HGNC:30546 FDX2 ferredoxin 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC19604 FDX1L ferredoxin 1-like 2007-08-15 2016-05-27 2016-05-27 2016-05-27 112812 ENSG00000267673 OTTHUMG00000141299 uc002mny.3 AK097022 NM_001031734 CCDS32905 Q6P4F2 24281368 MGI:1915415 RGD:1561264 614585 +HGNC:25110 FDXACB1 ferredoxin-fold anticodon binding domain containing 1 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "LOC91893|hCG_2033039" hypothetical protein BC006136 2008-10-15 2011-04-15 91893 ENSG00000255561 OTTHUMG00000166795 uc001pmc.5 NM_138378 CCDS44729 Q9BRP7 MGI:3584513 RGD:1562252 FDXACB1 +HGNC:3642 FDXR ferredoxin reductase protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "adrenodoxin-NADP(+) reductase|adrenodoxin reductase" ADXR 1988-06-09 2015-09-04 2232 ENSG00000161513 OTTHUMG00000179026 uc002jlx.4 J03826 NM_004110 "CCDS11707|CCDS58591|CCDS58592|CCDS58593|CCDS58594|CCDS58595|CCDS58596" P22570 2845396 MGI:104724 RGD:621648 FDXR 103270 1.18.1.6 +HGNC:3643 FEB1 febrile convulsions 1 phenotype phenotype only Approved 8q13-q21 08q13-q21 1998-03-30 2008-05-15 2233 8730286 121210 +HGNC:3644 FEB2 febrile convulsions 2 phenotype phenotype only Approved 19p13.3 19p13.3 1998-03-30 2007-05-15 2234 9384604 602477 +HGNC:3646 FEB4 febrile convulsions 4 phenotype phenotype only Approved 5q14-q15 05q14-q15 1999-11-19 2014-02-04 "10587582|16273391" +HGNC:33477 FEB5 febrile convulsions 5 phenotype phenotype only Approved 6q22-q24 06q22-q24 2007-05-15 2011-02-10 619398 12429594 609255 +HGNC:33478 FEB6 febrile convulsions 6 phenotype phenotype only Approved 18p11.2 18p11.2 2007-05-15 2011-02-10 619397 15557493 609253 +HGNC:33479 FEB7 febrile convulsions 7 phenotype phenotype only Approved 21q22 21q22 2007-05-15 2011-02-10 100049160 17054683 611515 +HGNC:3647 FECH ferrochelatase protein-coding gene gene with protein product Approved 18q21.31 18q21.31 protoporphyria ferrochelatase (protoporphyria) 1990-05-14 2010-05-11 2016-10-12 2235 ENSG00000066926 OTTHUMG00000132740 uc002lgq.5 D00726 XM_017025614 "CCDS11964|CCDS32836" P22830 1838349 MGI:95513 RGD:1307556 LRG_1080|http://www.lrg-sequence.org/LRG/LRG_1080 FECH 612386 121784 4.99.1.1 +HGNC:3648 FECHP1 ferrochelatase pseudogene 1 pseudogene pseudogene Approved 3p22.3 03p22.3 FECHP ferrochelatase pseudogene 1994-07-04 2010-03-12 2010-03-12 2014-11-19 2236 ENSG00000235534 OTTHUMG00000155765 X69299 NG_001118 8034322 PGOHUM00000237991 +HGNC:16934 FEM1A fem-1 homolog A protein-coding gene gene with protein product Approved 19p13.3 19p13.3 fem-1 homolog a (C. elegans) Ankyrin repeat domain containing 403 2002-10-08 2016-03-18 2016-03-18 55527 ENSG00000141965 OTTHUMG00000182048 uc002mbf.4 BC004988 NM_018708 CCDS12135 Q9BSK4 11441184 MGI:1335089 RGD:1561112 FEM1A 613538 +HGNC:17219 FEM1AP1 fem-1 homolog A pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 FEM1DP "fem-1 homolog d (C. elegans) pseudogene|fem-1 homolog a (C. elegans) pseudogene 1" 2003-10-01 2011-03-30 2016-03-18 2016-03-18 441957 ENSG00000229231 OTTHUMG00000074206 NG_021994 PGOHUM00000239133 +HGNC:39830 FEM1AP2 fem-1 homolog A pseudogene 2 pseudogene pseudogene Approved 18p11.21 18p11.21 fem-1 homolog a (C. elegans) pseudogene 2 2011-03-30 2016-03-18 2016-03-18 390834 ENSG00000265296 OTTHUMG00000178677 NG_022481 PGOHUM00000234877 +HGNC:39831 FEM1AP3 fem-1 homolog A pseudogene 3 pseudogene pseudogene Approved 6q21 06q21 fem-1 homolog a (C. elegans) pseudogene 3 2011-03-30 2016-03-18 2016-03-18 643859 ENSG00000217770 OTTHUMG00000015387 NG_022321 PGOHUM00000243331 +HGNC:39832 FEM1AP4 fem-1 homolog A pseudogene 4 pseudogene pseudogene Approved 13q11 13q11 fem-1 homolog a (C. elegans) pseudogene 4 2011-03-30 2016-03-18 2016-03-18 729524 ENSG00000235876 OTTHUMG00000016453 NG_011416 PGOHUM00000248499 +HGNC:3649 FEM1B fem-1 homolog B protein-coding gene gene with protein product Approved 15q23 15q23 "FEM-1 (C. elegans) homolog b|fem-1 homolog b (C. elegans)" Ankyrin repeat domain containing 403 1999-05-25 2016-03-18 2016-10-05 10116 ENSG00000169018 OTTHUMG00000133285 uc002arg.4 XM_017021859 CCDS10228 Q9UK73 10623617 MGI:1335087 RGD:1304569 FEM1B 613539 +HGNC:16933 FEM1C fem-1 homolog C protein-coding gene gene with protein product Approved 5q22.3 05q22.3 "KIAA1785|EUROIMAGE686608|EUROIMAGE783647|FEM1A" fem-1 homolog c (C. elegans) Ankyrin repeat domain containing 403 2002-10-08 2016-03-18 2016-10-05 56929 ENSG00000145780 OTTHUMG00000128895 uc003krb.2 NM_020177 CCDS4118 Q96JP0 "14527725|11733146" MGI:2444737 RGD:1309322 FEM1C 608767 +HGNC:3650 FEN1 flap structure-specific endonuclease 1 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "FEN-1|MF1" "maturation factor-1|DNase IV" RAD2 1995-02-03 2016-10-05 2237 ENSG00000168496 OTTHUMG00000168162 uc001nsg.4 L37374 NM_004111 CCDS8010 P39748 7774922 MGI:102779 RGD:621821 FEN1 600393 +HGNC:3651 FEN1P1 flap structure-specific endonuclease 1 pseudogene 1 pseudogene pseudogene Approved 1p22.2 01p22.2 FENL1 flap endonuclease-like 1 1995-04-19 2010-10-13 2010-10-13 2014-11-18 645931 ENSG00000215873 OTTHUMG00000010098 NG_005887 7774922 PGOHUM00000244791 +HGNC:43894 FENDRR FOXF1 adjacent non-coding developmental regulatory RNA non-coding RNA RNA, long non-coding Approved 16q24.1 16q24.1 "lincFOXF1|onco-lncRNA-21" FOXF1-AS1 FOXF1 antisense RNA 1 (head to head) Long non-coding RNAs 788 2012-04-25 2013-02-07 2013-02-07 2015-07-29 400550 ENSG00000268388 OTTHUMG00000183870 uc021tmg.2 AK091834 NR_033925 "24381249|23369715|19571010|23034409" MGI:1916040 RGD:9685086 614975 +HGNC:3655 FER FER tyrosine kinase protein-coding gene gene with protein product Approved 5q21.3 05q21.3 "TYK3|PPP1R74" "phosphoprotein NCP94|protein phosphatase 1, regulatory subunit 74" fer (fps/fes related) tyrosine kinase "Protein phosphatase 1 regulatory subunits|SH2 domain containing|F-BAR domain containing " "694|741|1288" 1990-03-05 2016-01-21 2016-10-05 2241 ENSG00000151422 OTTHUMG00000128751 uc003kop.2 J03358 NM_005246 "CCDS4098|CCDS78044" P16591 2725517 MGI:105917 RGD:1306273 FER 176942 objectId:2022 2.7.10.1 +HGNC:15801 FER1L4 fer-1 like family member 4, pseudogene pseudogene pseudogene Approved 20q11.22 20q11.22 "bA563A22B.1|dJ309K20.1" C20orf124 "fer-1-like 4 (C. elegans)|fer-1-like 4 (C. elegans), pseudogene (functional)|fer-1 like family member 4, pseudogene (functional)" "Ferlin family|Transcribed pseudogenes with published function" "828|859" 2001-09-17 2016-01-29 2016-10-05 80307 ENSG00000088340 OTTHUMG00000032354 AL121586 NR_024377 A9Z1Z3 "24063685|24961353" MGI:1921812 RGD:1308250 +HGNC:19044 FER1L5 fer-1 like family member 5 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 DKFZp434I0121 fer-1-like 5 (C. elegans) Ferlin family 828 2005-10-04 2016-01-18 2016-01-18 90342 ENSG00000249715 OTTHUMG00000154929 uc061lwu.1 BC126368 NM_001077400 CCDS77438 A0AVI2 MGI:3616091 RGD:1583681 FER1L5 +HGNC:28065 FER1L6 fer-1 like family member 6 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 C8ORFK23 fer-1-like 6 (C. elegans) Ferlin family 828 2007-04-24 2016-01-18 2016-01-18 654463 ENSG00000214814 OTTHUMG00000164998 uc003yqw.3 AB196633 NM_001039112 CCDS43767 Q2WGJ9 MGI:3645398 RGD:1564703 FER1L6 +HGNC:26652 FER1L6-AS1 FER1L6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 FLJ35721 C8orf54 "chromosome 8 open reading frame 54|FER1L6 antisense RNA 1 (non-protein coding)" 2005-08-16 2011-06-29 2012-08-15 2012-10-12 439941 ENSG00000181171 OTTHUMG00000165001 uc003yqx.1 NR_040044 Q8NA97 +HGNC:26534 FER1L6-AS2 FER1L6 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 FLJ32770 C8orf78 "chromosome 8 open reading frame 78|FER1L6 antisense RNA 2 (non-protein coding)" 2006-02-14 2012-04-18 2012-08-15 2012-10-12 157376 ENSG00000253868 OTTHUMG00000165000 uc003yqy.3 AK057332 NR_103547 Q96M78 +HGNC:16660 FERD3L Fer3 like bHLH transcription factor protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "NATO3|N-TWIST|bHLHa31" "Fer3-like (Drosophila)|Fer3-like bHLH transcription factor" Basic helix-loop-helix proteins 420 2002-12-09 2016-07-26 2016-10-05 222894 ENSG00000146618 OTTHUMG00000090823 uc003suo.1 AF369897 NM_152898 CCDS5368 Q96RJ6 "11472856|12217327" MGI:2150010 RGD:1311812 FERD3L +HGNC:15889 FERMT1 fermitin family member 1 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "FLJ20116|URP1|KIND1|UNC112A" "kindlin-1|kinderlin" C20orf42 "chromosome 20 open reading frame 42|fermitin family homolog 1 (Drosophila)" "Fermitins|Pleckstrin homology domain containing|FERM domain containing" "561|682|1293" 2001-06-21 2007-12-14 2010-06-24 2015-09-11 55612 ENSG00000101311 OTTHUMG00000031826 uc002wmr.3 AK000123 NM_017671 CCDS13098 Q9BQL6 "12697302|12789646" MGI:2443583 RGD:1306816 FERMT1 607900 159172 +HGNC:15767 FERMT2 fermitin family member 2 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "mig-2|KIND2|UNC112B" kindlin-2 PLEKHC1 "pleckstrin homology domain containing, family C (with FERM domain) member 1|fermitin family homolog 2 (Drosophila)" "Fermitins|Pleckstrin homology domain containing|FERM domain containing" "561|682|1293" 2003-04-23 2007-12-14 2010-06-24 2015-09-11 10979 ENSG00000073712 OTTHUMG00000140309 uc001xae.4 Z24725 NM_006832 "CCDS9713|CCDS45107|CCDS45108" Q96AC1 "8175911|12697302" MGI:2385001 RGD:1311799 FERMT2 607746 +HGNC:23151 FERMT3 fermitin family member 3 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "URP2|KIND3|MIG2B|MGC10966|MIG-2|UNC112C" kindlin-3 fermitin family homolog 3 (Drosophila) "Fermitins|Pleckstrin homology domain containing|FERM domain containing" "561|682|1293" 2007-12-14 2010-06-24 2016-10-12 83706 ENSG00000149781 OTTHUMG00000167790 uc001nym.3 L25343 NM_031471 "CCDS8059|CCDS8060" Q86UX7 MGI:2147790 RGD:1310168 LRG_180|http://www.lrg-sequence.org/LRG/LRG_180 FERMT3 607901 178806 +HGNC:26443 FERP1 FER tyrosine kinase pseudogene 1 pseudogene pseudogene Approved Xq25 Xq25 FERps FERP "fer (fps/fes related) tyrosine kinase (phosphoprotein NCP94) pseudogene|fer (fps/fes related) tyrosine kinase (phosphoprotein NCP94) pseudogene 1" 2005-05-06 2010-03-12 2016-02-12 2016-02-12 553112 ENSG00000232149 OTTHUMG00000022329 AL030996 NG_005390 +HGNC:3657 FES FES proto-oncogene, tyrosine kinase protein-coding gene gene with protein product Approved 15q26.1 15q26.1 FPS "Oncogene FES, feline sarcoma virus|c-fes/fps protein" "feline sarcoma (Snyder-Theilen) viral (v-fes)/Fujinami avian sarcoma (PRCII) viral (v-fps) oncogene homolog|feline sarcoma oncogene" "SH2 domain containing|F-BAR domain containing " "741|1288" 2001-06-22 2014-06-26 2015-09-11 2242 ENSG00000182511 OTTHUMG00000044456 uc002bpv.4 X52192 NM_002005 "CCDS10365|CCDS45349|CCDS45350|CCDS45351" P07332 1870997 MGI:95514 RGD:1564385 FES 190030 objectId:2023 2.7.10.1 +HGNC:3658 FETUB fetuin B protein-coding gene gene with protein product Approved 3q27.3 03q27.3 Cystatins, type 4 968 2000-05-05 2014-11-19 26998 ENSG00000090512 OTTHUMG00000156586 uc010hyq.4 AJ242928 NM_014375 "CCDS3279|CCDS77871|CCDS82884" Q9UGM5 10947975 MGI:1890221 RGD:69293 FETUB 605954 I25.061 +HGNC:18562 FEV FEV, ETS transcription factor protein-coding gene gene with protein product Approved 2q35 02q35 Pet-1 "FEV (fifth Ewing variant)|FEV (ETS oncogene family)" ETS transcription factor family 534 2004-03-19 2016-02-25 2016-10-05 54738 ENSG00000163497 OTTHUMG00000133080 uc002vji.1 NM_017521 CCDS2428 Q99581 9121764 MGI:2449712 RGD:628860 FEV 607150 +HGNC:3659 FEZ1 fasciculation and elongation protein zeta 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 UNC-76 zygin I 1999-12-14 2015-11-10 2015-11-10 9638 ENSG00000149557 OTTHUMG00000165886 uc001qbx.4 U60060 NM_005103 "CCDS31716|CCDS44758" Q99689 "9096408|15843383" MGI:2670976 RGD:619708 FEZ1 604825 +HGNC:3660 FEZ2 fasciculation and elongation protein zeta 2 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 zygin II 1999-12-14 2016-01-12 2016-10-05 9637 ENSG00000171055 OTTHUMG00000152148 uc002rpg.3 U60061 NM_005102 "CCDS46257|CCDS46258" Q9UHY8 9096408 MGI:2675856 RGD:619709 FEZ2 604826 +HGNC:22788 FEZF1 FEZ family zinc finger 1 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 ZNF312B zinc finger protein 312B Zinc fingers C2H2-type 28 2006-08-14 2006-08-15 2006-08-15 2016-04-25 389549 ENSG00000128610 OTTHUMG00000157091 uc003vkd.4 AY726588 NM_001024613 "CCDS34741|CCDS55157" A0PJY2 MGI:1920441 RGD:1560480 FEZF1 613301 410849 1028 +HGNC:41001 FEZF1-AS1 FEZF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q31.32 07q31.32 FEZF1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 154860 ENSG00000230316 OTTHUMG00000157095 uc010lko.2 AK057037 NR_036484 +HGNC:13506 FEZF2 FEZ family zinc finger 2 protein-coding gene gene with protein product Approved 3p14.2 03p14.2 "FLJ10142|FKSG36|TOF|FEZL|Zfp312" ZNF312 zinc finger protein 312 Zinc fingers C2H2-type 28 2004-07-15 2006-08-15 2006-08-15 2016-10-05 55079 ENSG00000153266 OTTHUMG00000158705 uc062lcz.1 AF064845 NM_018008 CCDS2897 Q8TBJ5 MGI:1859823 RGD:1311068 FEZF2 607414 +HGNC:4498 FFAR1 free fatty acid receptor 1 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FFA1R GPR40 G protein-coupled receptor 40 Free fatty acid receptors 203 1997-10-10 2006-02-15 2006-02-15 2016-10-05 2864 ENSG00000126266 OTTHUMG00000188261 uc002nzc.3 AF024687 NM_005303 CCDS12458 O14842 15684720 MGI:2684079 RGD:628613 FFAR1 603820 objectId:225 +HGNC:4501 FFAR2 free fatty acid receptor 2 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FFA2R GPR43 G protein-coupled receptor 43 Free fatty acid receptors 203 1997-10-10 2006-02-15 2006-02-15 2016-10-05 2867 ENSG00000126262 OTTHUMG00000183303 uc010eea.4 AF024690 NM_005306 CCDS12461 O15552 9344866 MGI:2441731 RGD:1359614 FFAR2 603823 objectId:226 +HGNC:4499 FFAR3 free fatty acid receptor 3 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FFA3R GPR41 G protein-coupled receptor 41 Free fatty acid receptors 203 1997-10-10 2006-02-15 2006-02-15 2016-10-05 2865 ENSG00000185897 OTTHUMG00000172514 uc002nzd.4 AF024688 NM_005304 CCDS12459 O14843 "9344866|22493486" MGI:2685324 RGD:1311035 FFAR3 603821 objectId:227 +HGNC:19061 FFAR4 free fatty acid receptor 4 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 PGR4 "GPR129|GPR120|O3FAR1" "G protein-coupled receptor 129|G protein-coupled receptor 120|omega-3 fatty acid receptor 1" Free fatty acid receptors 203 2003-08-22 2012-11-16 2012-11-16 2014-11-19 338557 ENSG00000186188 OTTHUMG00000034409 uc010qnu.2 NM_181745 "CCDS31248|CCDS55720" Q5NUL3 "20471368|19723586|15619630|20813258" MGI:2147577 RGD:1308252 609044 objectId:127 +HGNC:3661 FGA fibrinogen alpha chain protein-coding gene gene with protein product Approved 4q31.3 04q31.3 fibrinogen, A alpha polypeptide "Endogenous ligands|Fibrinogen C domain containing" "542|554" 2001-06-22 2016-10-12 2243 ENSG00000171560 OTTHUMG00000150330 uc003iod.2 NM_000508 "CCDS3787|CCDS47152" P02671 MGI:1316726 RGD:2603 "A Database For Human Fibrinogen Variants|http://www.geht.org/databaseang/fibrinogen/|LRG_557|http://www.lrg-sequence.org/LRG/LRG_557" FGA 134820 121786 +HGNC:3662 FGB fibrinogen beta chain protein-coding gene gene with protein product Approved 4q31.3 04q31.3 fibrinogen, B beta polypeptide "Endogenous ligands|Fibrinogen C domain containing" "542|554" 2001-06-22 2016-10-12 2244 ENSG00000171564 OTTHUMG00000150331 uc003ioa.5 NM_005141 CCDS3786 P02675 MGI:99501 RGD:2604 "A Database For Human Fibrinogen Variants|http://www.geht.org/databaseang/fibrinogen/|LRG_558|http://www.lrg-sequence.org/LRG/LRG_558" FGB 134830 121788 +HGNC:3663 FGD1 FYVE, RhoGEF and PH domain containing 1 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 ZFYVE3 FGDY faciogenital dysplasia (Aarskog-Scott syndrome) "Zinc fingers FYVE-type|Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "81|682|722" 1986-01-01 2008-08-01 2016-10-05 2245 ENSG00000102302 OTTHUMG00000021627 uc004dtg.3 U11690 NM_004463 CCDS14359 P98174 MGI:104566 RGD:1565188 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FGD1 FGD1 300546 121790 +HGNC:3664 FGD2 FYVE, RhoGEF and PH domain containing 2 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 ZFYVE4 FGD1 family, member 2 "Zinc fingers FYVE-type|Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "81|682|722" 1999-05-17 2004-08-24 2015-09-11 221472 ENSG00000146192 OTTHUMG00000014616 uc010jwp.2 AK097230 NM_173558 CCDS4829 Q7Z6J4 10458911 MGI:1347084 RGD:1309840 FGD2 605091 +HGNC:16027 FGD3 FYVE, RhoGEF and PH domain containing 3 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "FLJ00004|ZFYVE5" FGD1 family, member 3 "Zinc fingers FYVE-type|Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "81|682|722" 2001-07-02 2004-08-24 2016-10-05 89846 ENSG00000127084 OTTHUMG00000021032 uc004asw.3 AK000004 NM_033086 "CCDS43849|CCDS69619" Q5JSP0 11214971 MGI:1353657 RGD:1311725 FGD3 +HGNC:19125 FGD4 FYVE, RhoGEF and PH domain containing 4 protein-coding gene gene with protein product Approved 12p11.21 12p11.21 "FRABP|frabin|ZFYVE6|CMT4H" FGD1 family, member 4 "Zinc fingers FYVE-type|Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "81|682|722" 2003-11-25 2004-08-24 2016-10-12 121512 ENSG00000139132 OTTHUMG00000137374 uc001rkz.5 AK057294 NM_139241 "CCDS8727|CCDS76544|CCDS76545|CCDS81679" Q96M96 11527409 MGI:2183747 RGD:708357 LRG_240|http://www.lrg-sequence.org/LRG/LRG_240 FGD4 611104 138570 +HGNC:19117 FGD5 FYVE, RhoGEF and PH domain containing 5 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "ZFYVE23|FLJ39957|FLJ00274" "Zinc fingers FYVE-type|Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "81|682|722" 2003-11-25 2014-11-19 152273 ENSG00000154783 OTTHUMG00000155556 uc003bzc.4 AK097276 NM_152536 CCDS46767 Q6ZNL6 MGI:2443369 RGD:1305589 FGD5 614788 +HGNC:40410 FGD5-AS1 FGD5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.1 03p25.1 FGD5 antisense RNA 1 (non-protein coding) 2011-10-20 2012-08-15 2014-11-19 100505641 ENSG00000225733 OTTHUMG00000155555 uc062hao.1 BC033386 NR_046251 +HGNC:44498 FGD5P1 FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudogene pseudogene Approved 3p25.1 03p25.1 2012-11-07 2015-02-03 100132526 ENSG00000275340 OTTHUMG00000160207 NR_036481 PGOHUM00000299356 +HGNC:21740 FGD6 FYVE, RhoGEF and PH domain containing 6 protein-coding gene gene with protein product Approved 12q22 12q22 "ZFYVE24|FLJ11183" "Zinc fingers FYVE-type|Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "81|682|722" 2003-11-25 2016-10-05 55785 ENSG00000180263 OTTHUMG00000170133 uc001tdp.4 AB037783 NM_018351 CCDS31878 Q6ZV73 MGI:1261419 RGD:1565609 FGD6 613520 +HGNC:3665 FGF1 fibroblast growth factor 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "AFGF|ECGF|ECGFA|ECGFB|HBGF1|ECGF-beta|FGF-alpha|GLIO703" "heparin-binding growth factor 1|endothelial cell growth factor, alpha|endothelial cell growth factor, beta" FGFA fibroblast growth factor 1 (acidic) Endogenous ligands 542 1986-01-01 2016-01-21 2016-10-05 2246 ENSG00000113578 OTTHUMG00000059703 uc003lms.5 X59065 NM_000800 "CCDS4275|CCDS4276" P05230 "1697263|3523756" MGI:95515 RGD:2605 FGF1 131220 +HGNC:3676 FGF2 fibroblast growth factor 2 protein-coding gene gene with protein product Approved 4q28.1 04q28.1 FGFB fibroblast growth factor 2 (basic) Endogenous ligands 542 1986-01-01 2016-01-21 2016-10-05 2247 ENSG00000138685 OTTHUMG00000039506 uc062zki.1 J04513 NM_002006 CCDS34059 P09038 9925931 MGI:95516 RGD:2609 FGF2 134920 +HGNC:3681 FGF3 fibroblast growth factor 3 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 HBGF-3 "INT-2 proto-oncogene protein|oncogene INT2|V-INT2 murine mammary tumor virus integration site oncogene homolog|murine mammary tumor virus integration site 2, mouse" INT2 fibroblast growth factor 3 (murine mammary tumor virus integration site (v-int-2) oncogene homolog) 1986-01-01 2010-06-25 2016-10-05 2248 ENSG00000186895 OTTHUMG00000167888 uc001oph.4 NM_005247 CCDS8195 P11487 MGI:95517 RGD:620126 FGF3 164950 159580 +HGNC:3682 FGF4 fibroblast growth factor 4 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 "K-FGF|HBGF-4|HST|HST-1|KFGF" "human stomach cancer, transforming factor from FGF-related oncogene|kaposi sarcoma oncogene|transforming protein KS3" HSTF1 heparin secretory transforming protein 1 Endogenous ligands 542 1988-04-20 2008-08-01 2014-11-19 2249 ENSG00000075388 OTTHUMG00000167887 uc001opg.2 M17446 NM_002007 CCDS8194 P08620 1611909 MGI:95518 RGD:620127 FGF4 164980 +HGNC:3683 FGF5 fibroblast growth factor 5 protein-coding gene gene with protein product Approved 4q21.21 04q21.21 Endogenous ligands 542 1989-06-30 2016-10-05 2250 ENSG00000138675 OTTHUMG00000130288 uc003hmd.4 M23534 NM_001291812 "CCDS3586|CCDS34021" P12034 "3211147|2577873" MGI:95519 RGD:620129 FGF5 165190 411802 +HGNC:3684 FGF6 fibroblast growth factor 6 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 Endogenous ligands 542 1990-02-24 2016-10-05 2251 ENSG00000111241 OTTHUMG00000168242 uc001qmr.2 X63454 NM_020996 CCDS8527 P10767 16597617 MGI:95520 RGD:620130 FGF6 134921 +HGNC:3685 FGF7 fibroblast growth factor 7 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 KGF keratinocyte growth factor fibroblast growth factor 7 (keratinocyte growth factor) Endogenous ligands 542 1992-02-20 2010-08-18 2014-11-19 2252 ENSG00000140285 OTTHUMG00000131517 uc059jba.1 M60828 NM_002009 CCDS10131 P21781 "7749227|1409637" MGI:95521 RGD:61805 FGF7 148180 +HGNC:21455 FGF7P1 fibroblast growth factor 7 pseudogene 1 pseudogene pseudogene Approved 18p11.21 18p11.21 HsT283 2003-12-17 2016-07-12 387559 ENSG00000264061 OTTHUMG00000178809 NG_006580 PGOHUM00000294612 +HGNC:17193 FGF7P2 fibroblast growth factor 7 pseudogene 2 pseudogene pseudogene Approved 21q11.2 21q11.2 FGF7L 2004-01-13 2016-07-12 394217 ENSG00000185390 OTTHUMG00000074196 NG_005961 FGF7P2 PGOHUM00000297333 +HGNC:26671 FGF7P3 fibroblast growth factor 7 pseudogene 3 pseudogene pseudogene Approved 9p12 09p12 KGFLP2 2016-07-12 2016-07-12 654466 ENSG00000204837 OTTHUMG00000067165 NR_003670 15809711 PGOHUM00000303809 +HGNC:33587 FGF7P4 fibroblast growth factor 7 pseudogene 4 pseudogene pseudogene Approved 9p11.1 09p11.1 2016-07-12 2016-07-12 728195 ENSG00000216829 OTTHUMG00000013561 NG_006612 PGOHUM00000303838 +HGNC:33588 FGF7P5 fibroblast growth factor 7 pseudogene 5 pseudogene pseudogene Approved 9p11.1 09p11.1 2016-07-12 2016-07-12 653453 ENSG00000204816 OTTHUMG00000013228 NG_006613 PGOHUM00000304221 +HGNC:27852 FGF7P6 fibroblast growth factor 7 pseudogene 6 pseudogene pseudogene Approved 9q13 09q13 KGFLP1 2016-07-12 2016-07-12 387628 ENSG00000227449 OTTHUMG00000013302 AY098593 NR_047527 15809711 PGOHUM00000304245 +HGNC:33589 FGF7P7 fibroblast growth factor 7 pseudogene 7 pseudogene pseudogene Approved 9q13 09q13 2016-07-12 2016-07-12 728433 ENSG00000204801 OTTHUMG00000058630 NG_006614 PGOHUM00000303860 +HGNC:34516 FGF7P8 fibroblast growth factor 7 pseudogene 8 pseudogene pseudogene Approved 9q13 09q13 2016-07-12 2016-07-12 100113421 ENSG00000219693 OTTHUMG00000067257 NG_006615 PGOHUM00000304253 +HGNC:3686 FGF8 fibroblast growth factor 8 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 AIGF androgen-induced growth factor fibroblast growth factor 8 (androgen-induced) Endogenous ligands 542 1995-08-15 2015-12-04 2016-10-05 2253 ENSG00000107831 OTTHUMG00000018940 uc001ktq.3 D38752 "NM_006119|NM_033165" "CCDS7515|CCDS7516|CCDS7517|CCDS7518|CCDS73185" P55075 8595889 MGI:99604 RGD:70891 FGF8 600483 173149 +HGNC:3687 FGF9 fibroblast growth factor 9 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 glia-activating factor fibroblast growth factor 9 (glia-activating factor) Endogenous ligands 542 1995-08-15 2013-06-18 2016-10-05 2254 ENSG00000102678 OTTHUMG00000017412 uc001uog.3 D14838 XM_011534996 CCDS9298 P31371 8321227 MGI:104723 RGD:2610 FGF9 600921 201587 +HGNC:3666 FGF10 fibroblast growth factor 10 protein-coding gene gene with protein product Approved 5p12 05p12 1996-12-16 2016-10-05 2255 ENSG00000070193 OTTHUMG00000131153 uc003jog.2 NM_004465 CCDS3950 O15520 9287324 MGI:1099809 RGD:2606 FGF10 602115 121794 +HGNC:49382 FGF10-AS1 FGF10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p12 05p12 RP11-473L15.2 2013-10-22 2013-10-23 101927075 ENSG00000248464 OTTHUMG00000162233 BC042062 NR_108034 24147006 +HGNC:3667 FGF11 fibroblast growth factor 11 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "FHF3|FLJ16061|MGC45269|MGC102953" fibroblast growth factor homologous factor 3 1996-10-26 2014-11-18 2256 ENSG00000161958 OTTHUMG00000108136 uc002ggz.4 NM_004112 CCDS11105 Q92914 8790420 MGI:109167 RGD:620162 FGF11 601514 +HGNC:3668 FGF12 fibroblast growth factor 12 protein-coding gene gene with protein product Approved 3q28-q29 03q28-q29 FHF1 "fibroblast growth factor 12B|fibroblast growth factor homologous factor 1|myocyte-activating factor|fibroblast growth factor FGF-12b" FGF12B 1996-10-26 2016-10-11 2257 ENSG00000114279 OTTHUMG00000156132 uc003fsx.4 U66197 NM_021032 "CCDS3301|CCDS46983" P61328 "8790420|9345906" MGI:109183 RGD:620163 FGF12 601513 +HGNC:40234 FGF12-AS1 FGF12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q28 03q28 FGF12 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873986 ENSG00000231383 OTTHUMG00000156141 uc062rll.1 NR_046596 +HGNC:40235 FGF12-AS2 FGF12 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q28 03q28 FGF12 antisense RNA 2 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873987 ENSG00000230126 OTTHUMG00000156143 uc062rlm.1 +HGNC:40236 FGF12-AS3 FGF12 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 3q28 03q28 FGF12 antisense RNA 3 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873988 ENSG00000226709 OTTHUMG00000156142 uc062rln.1 XR_924830 +HGNC:3670 FGF13 fibroblast growth factor 13 protein-coding gene gene with protein product Approved Xq26.3-q27.1 Xq26.3-q27.1 "FHF2|FGF2" fibroblast growth factor homologous factor 2 1996-12-16 2016-10-11 2258 ENSG00000129682 OTTHUMG00000022532 uc004fal.4 BC034340 NM_004114 "CCDS14664|CCDS14665|CCDS55511|CCDS55512|CCDS55513" Q92913 8790420 MGI:109178 RGD:620164 FGF13 300070 +HGNC:44264 FGF13-AS1 FGF13 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq26.3 Xq26.3 FGF13 antisense RNA 1 (non-protein coding) 2012-08-01 2012-08-15 2012-10-12 100129662 ENSG00000226031 OTTHUMG00000137416 uc065bjd.1 BC023610 NR_038405 +HGNC:3671 FGF14 fibroblast growth factor 14 protein-coding gene gene with protein product Approved 13q33.1 13q33.1 "FHF4|SCA27" 1996-12-18 2016-10-05 2259 ENSG00000102466 OTTHUMG00000017303 uc001vpe.3 NM_001321949 "CCDS9500|CCDS9501" Q92915 "8790420|17236779" MGI:109189 RGD:620165 FGF14 601515 121796 +HGNC:40237 FGF14-AS1 FGF14 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q33.1 13q33.1 FGF14 antisense RNA 1 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874081 ENSG00000234445 OTTHUMG00000017302 uc058ybu.1 AI217925 NR_125912 +HGNC:44368 FGF14-AS2 FGF14 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q33.1 13q33.1 2012-09-12 2013-09-03 283481 ENSG00000272143 OTTHUMG00000185723 uc058ybv.1 "BC033993|BM674599|BX096285" NR_036487 +HGNC:42774 FGF14-IT1 FGF14 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q33.1 13q33.1 FGF14 intronic transcript 1 (non-protein coding) 2011-08-18 2015-02-25 2015-02-25 283480 ENSG00000243319 OTTHUMG00000017301 uc001vph.3 NR_036486 +HGNC:3672 FGF16 fibroblast growth factor 16 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 MF4 metacarpal 4-5 fusion 1998-12-22 2014-11-19 8823 ENSG00000196468 OTTHUMG00000013133 uc033ejs.2 AB009391 NM_003868 CCDS75996 O43320 "9473496|11474196|23709756" MGI:1931627 RGD:71052 FGF16 300827 364799 +HGNC:3673 FGF17 fibroblast growth factor 17 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 FGF-13 1998-12-22 2014-11-19 8822 ENSG00000158815 OTTHUMG00000097051 uc003xag.4 AB009249 NM_003867 "CCDS6019|CCDS78310" O60258 "9514906|9751161" MGI:1202401 RGD:2607 FGF17 603725 353741 +HGNC:3674 FGF18 fibroblast growth factor 18 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "FGF-18|ZFGF5" 1998-12-22 2016-10-05 8817 ENSG00000156427 OTTHUMG00000130464 uc003mbk.4 AB007422 "NM_033649|NM_003862" CCDS4378 O76093 "9660775|9742123" MGI:1277980 RGD:2608 FGF18 603726 +HGNC:3675 FGF19 fibroblast growth factor 19 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 1999-05-06 2016-10-05 9965 ENSG00000162344 OTTHUMG00000167886 uc001opf.4 AB018122 NM_005117 CCDS8193 O95750 "9931477|10525310" MGI:1096383 RGD:620166 FGF19 603891 +HGNC:3677 FGF20 fibroblast growth factor 20 protein-coding gene gene with protein product Approved 8p22 08p22 1999-11-19 2015-09-07 26281 ENSG00000078579 OTTHUMG00000096964 uc003wxc.2 AB030648 NM_019851 CCDS5998 Q9NP95 10913340 MGI:1891346 RGD:71068 FGF20 605558 401132 +HGNC:3678 FGF21 fibroblast growth factor 21 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 1999-11-26 2014-11-18 26291 ENSG00000105550 OTTHUMG00000183326 uc002pkn.2 AB021975 NM_019113 CCDS12734 Q9NSA1 10858549 MGI:1861377 RGD:620175 FGF21 609436 +HGNC:3679 FGF22 fibroblast growth factor 22 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 1999-12-20 2015-08-25 27006 ENSG00000070388 OTTHUMG00000180591 uc010xfq.4 NM_020637 "CCDS12037|CCDS74241" Q9HCT0 "15260994|16597617" MGI:1914362 RGD:620177 FGF22 605831 +HGNC:3680 FGF23 fibroblast growth factor 23 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 2000-05-16 2016-10-05 8074 ENSG00000118972 OTTHUMG00000168241 uc001qmq.1 AF263537 NM_020638 CCDS8526 Q9GZV9 "11032749|18310961" MGI:1891427 RGD:620178 FGF23 605380 121800 +HGNC:19695 FGFBP1 fibroblast growth factor binding protein 1 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "HBP17|FGFBP" 2004-06-23 2014-11-19 9982 ENSG00000137440 OTTHUMG00000097745 uc003gom.4 M60047 NM_005130 CCDS3418 Q14512 "11148217|1885605" MGI:1096350 RGD:621211 FGFBP1 607737 +HGNC:29451 FGFBP2 fibroblast growth factor binding protein 2 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 KSP37 killer-specific secretory protein of 37 kDa 2006-12-14 2014-11-19 83888 ENSG00000137441 OTTHUMG00000128513 uc003gon.4 AB021123 NM_031950 CCDS3419 Q9BYJ0 "11342666|12322897" FGFBP2 607713 +HGNC:23428 FGFBP3 fibroblast growth factor binding protein 3 protein-coding gene gene with protein product Approved 10q23.32 10q23.32 MGC39320 C10orf13 chromosome 10 open reading frame 13 2003-11-18 2006-12-14 2006-12-14 2016-10-05 143282 ENSG00000174721 OTTHUMG00000018751 uc001khq.5 AK075410 NM_152429 CCDS7418 Q8TAT2 MGI:1919764 RGD:1560326 FGFBP3 +HGNC:3688 FGFR1 fibroblast growth factor receptor 1 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "H2|H3|H4|H5|CEK|FLG|BFGFR|N-SAM|CD331" Pfeiffer syndrome "FLT2|KAL2" fms-related tyrosine kinase 2 "Receptor Tyrosine Kinases|CD molecules|I-set domain containing" "321|471|593" 1992-02-25 2008-08-01 2016-10-12 2260 ENSG00000077782 OTTHUMG00000147366 uc064mbw.1 M34185 XM_011544443 "CCDS6107|CCDS43730|CCDS43731|CCDS43732|CCDS55221|CCDS55222|CCDS55223" P11362 2162671 MGI:95522 RGD:620713 LRG_993|http://www.lrg-sequence.org/LRG/LRG_993 FGFR1 136350 121802 objectId:1808 CD331 2.7.10.1 +HGNC:17012 FGFR1OP FGFR1 oncogene partner protein-coding gene gene with protein product Approved 6q27 06q27 FOP 2003-05-21 2014-11-19 11116 ENSG00000213066 OTTHUMG00000016011 uc003qvj.5 Y18046 NM_007045 "CCDS5296|CCDS5297|CCDS75550" O95684 "9949182|10373756" MGI:1922546 RGD:1583370 FGFR1OP 605392 +HGNC:23098 FGFR1OP2 FGFR1 oncogene partner 2 protein-coding gene gene with protein product Approved 12p11.23 12p11.23 DKFZp564O1863 2003-09-11 2016-10-05 26127 ENSG00000111790 OTTHUMG00000169231 uc001rhn.4 AF161472 NM_015633 "CCDS8709|CCDS53766|CCDS53767" Q9NVK5 15034873 MGI:1914779 RGD:1303233 FGFR1OP2 608858 +HGNC:39706 FGFR1OP2P1 FGFR1 oncogene partner 2 pseudogene 1 pseudogene pseudogene Approved 13q12.13 13q12.13 2011-03-23 2011-03-23 100873883 ENSG00000230256 OTTHUMG00000016622 NG_032350 PGOHUM00000248548 +HGNC:3689 FGFR2 fibroblast growth factor receptor 2 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "CEK3|TK14|TK25|ECT1|K-SAM|CD332" "Crouzon syndrome|Pfeiffer syndrome" "KGFR|BEK|CFD1|JWS" "bacteria-expressed kinase|keratinocyte growth factor receptor|craniofacial dysostosis 1|Jackson-Weiss syndrome" "Receptor Tyrosine Kinases|CD molecules|I-set domain containing" "321|471|593" 1991-05-09 2008-08-01 2016-10-12 2263 ENSG00000066468 OTTHUMG00000019175 uc057wle.1 AK026508 "NM_022976|NM_000141" "CCDS7620|CCDS31298|CCDS44485|CCDS44486|CCDS44487|CCDS44488|CCDS44489|CCDS53584|CCDS73210|CCDS81514|CCDS81515" P21802 MGI:95523 RGD:2611 LRG_994|http://www.lrg-sequence.org/LRG/LRG_994 FGFR2 176943 132262 objectId:1809 CD332 +HGNC:3690 FGFR3 fibroblast growth factor receptor 3 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "CEK2|JTK4|CD333" ACH achondroplasia, thanatophoric dwarfism "Receptor Tyrosine Kinases|CD molecules|I-set domain containing" "321|471|593" 1991-06-07 2008-08-01 2016-10-12 2261 ENSG00000068078 OTTHUMG00000121148 uc003gdr.3 M64347 NM_000142 "CCDS3353|CCDS3354|CCDS54706" P22607 1847508 MGI:95524 RGD:620714 LRG_1021|http://www.lrg-sequence.org/LRG/LRG_1021 FGFR3 134934 121815 objectId:1810 CD333 +HGNC:21664 FGFR3P1 fibroblast growth factor receptor 3 pseudogene 1 pseudogene pseudogene Approved 6p21.33 06p21.33 D84394.2 "FGFR3P|FGFR6" "fibroblast growth factor receptor 3 pseudogene|fibroblast growth factor receptor 6" 2003-11-26 2010-03-12 2010-03-12 2014-11-19 100462812 ENSG00000230994 OTTHUMG00000031234 NG_025930 PGOHUM00000243582 +HGNC:37947 FGFR3P2 fibroblast growth factor receptor 3 pseudogene 2 pseudogene pseudogene Approved 11q21 11q21 2010-03-12 2014-11-19 100462815 NG_021799 PGOHUM00000242432 +HGNC:37948 FGFR3P3 fibroblast growth factor receptor 3 pseudogene 3 pseudogene pseudogene Approved 20p12.3 20p12.3 2010-03-12 2014-11-19 100462816 NG_021985 PGOHUM00000247587 +HGNC:37949 FGFR3P4 fibroblast growth factor receptor 3 pseudogene 4 pseudogene pseudogene Approved 3q26.32 03q26.32 2010-03-12 2014-11-19 100420833 NG_022229 PGOHUM00000237874 +HGNC:37950 FGFR3P5 fibroblast growth factor receptor 3 pseudogene 5 pseudogene pseudogene Approved 16p11.2 16p11.2 2010-03-12 2014-11-19 100420952 ENSG00000260984 OTTHUMG00000176658 NG_022502 PGOHUM00000248856 +HGNC:37951 FGFR3P6 fibroblast growth factor receptor 3 pseudogene 6 pseudogene pseudogene Approved 1q44 01q44 2010-03-12 2014-11-19 100420881 ENSG00000226164 OTTHUMG00000041166 NG_022833 PGOHUM00000245293 +HGNC:3691 FGFR4 fibroblast growth factor receptor 4 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "JTK2|CD334" "Receptor Tyrosine Kinases|CD molecules|I-set domain containing" "321|471|593" 1991-07-25 2015-08-25 2264 ENSG00000160867 OTTHUMG00000151523 uc003mfm.4 AF202063 XM_011534464 "CCDS4410|CCDS4411|CCDS78096" P22455 MGI:95525 RGD:2612 FGFR4 134935 objectId:1811 CD334 +HGNC:3693 FGFRL1 fibroblast growth factor receptor-like 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 I-set domain containing 593 2000-05-23 2016-10-05 53834 ENSG00000127418 OTTHUMG00000118998 uc062uil.1 NM_021923 CCDS3344 Q8N441 MGI:2150920 RGD:735156 FGFRL1 605830 +HGNC:3694 FGG fibrinogen gamma chain protein-coding gene gene with protein product Approved 4q32.1 04q32.1 fibrinogen, gamma polypeptide "Endogenous ligands|Fibrinogen C domain containing" "542|554" 2001-06-22 2016-10-12 2266 ENSG00000171557 OTTHUMG00000150329 uc003iog.4 NM_021870 "CCDS3788|CCDS47153" P02679 MGI:95526 RGD:2613 "A Database For Human Fibrinogen Variants|http://www.geht.org/databaseang/fibrinogen/|LRG_585|http://www.lrg-sequence.org/LRG/LRG_585" FGG 134850 121821 +HGNC:25610 FGGY FGGY carbohydrate kinase domain containing protein-coding gene gene with protein product Approved 1p32.1 01p32.1 FLJ10986 2008-02-28 2015-09-11 55277 ENSG00000172456 OTTHUMG00000008424 uc001czi.6 NM_001113411 "CCDS611|CCDS44155|CCDS58003|CCDS60155" Q96C11 17671248 MGI:1922828 RGD:1359429 FGGY 611370 +HGNC:3695 FGL1 fibrinogen like 1 protein-coding gene gene with protein product Approved 8p22 08p22 HFREP-1 Fibrinogen C domain containing 554 1995-05-25 2015-11-09 2015-11-09 2267 ENSG00000104760 OTTHUMG00000096989 uc003wye.4 D14446 NM_004467 CCDS6004 Q08830 8390249 MGI:102795 RGD:620169 FGL1 605776 +HGNC:3696 FGL2 fibrinogen like 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "pT49|T49" fibrinogen-like 2 Fibrinogen C domain containing 554 1999-09-07 2016-02-03 2016-02-03 10875 ENSG00000127951 OTTHUMG00000130681 uc003ugb.4 Z36531 NM_006682 CCDS5591 Q14314 7642106 MGI:103266 RGD:620170 FGL2 605351 +HGNC:3697 FGR FGR proto-oncogene, Src family tyrosine kinase protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "c-fgr|p55c-fgr" SRC2 "Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog|v-fgr feline Gardner-Rasheed sarcoma viral oncogene homolog|feline Gardner-Rasheed sarcoma viral oncogene homolog" SH2 domain containing 741 2001-06-22 2014-06-25 2016-10-05 2268 ENSG00000000938 OTTHUMG00000003516 uc001bom.4 BC064382 NM_005248 CCDS305 P09769 3922831 MGI:95527 RGD:621319 FGR 164940 objectId:2024 +HGNC:3699 FGS2 FG syndrome 2 phenotype phenotype only Approved Xq11-q28 Xq11-q28 1998-03-25 2014-02-04 2270 "11078572|22528511" +HGNC:15596 FGS3 FG syndrome 3 phenotype phenotype only Approved Xp22.3 Xp22.3 2001-05-03 2011-02-10 93985 12239712 300406 +HGNC:37735 FGS5 FG syndrome 5 phenotype phenotype only Approved Xq22.3 Xq22.3 2010-02-09 2011-02-10 780900 16283679 300581 +HGNC:3700 FH fumarate hydratase protein-coding gene gene with protein product Approved 1q43 01q43 fumarase 2001-06-22 2016-10-12 2271 ENSG00000091483 OTTHUMG00000039597 uc001hyx.4 BC003108 NM_000143 CCDS1617 P07954 MGI:95530 RGD:2614 "TCA Cycle Gene Mutation Database|http://chromium.liacs.nl/LOVD2/SDH/home.php?select_db=FH|LRG_504|http://www.lrg-sequence.org/LRG/LRG_504" FH 136850 121823 4.2.1.2 +HGNC:29408 FHAD1 forkhead associated phosphopeptide binding domain 1 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 KIAA1937 forkhead-associated (FHA) phosphopeptide binding domain 1 2005-07-19 2016-06-21 2016-06-21 114827 ENSG00000142621 OTTHUMG00000002088 uc001awb.2 AK093300 NM_052929 B1AJZ9 11572484 MGI:1920323 RGD:1563444 FHAD1 +HGNC:29363 FHDC1 FH2 domain containing 1 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 KIAA1727 2007-11-29 2007-11-29 2014-11-19 85462 ENSG00000137460 OTTHUMG00000161452 uc063ahi.1 AB051514 NM_033393 CCDS34081 Q9C0D6 15138637 MGI:2684972 RGD:1311955 FHDC1 +HGNC:3701 FHIT fragile histidine triad protein-coding gene gene with protein product Approved 3p14.2 03p14.2 "FRA3B|AP3Aase" fragile histidine triad gene 1996-10-18 2012-02-27 2016-06-10 2272 ENSG00000189283 OTTHUMG00000158591 uc003dkx.5 BC032336 NM_002012 CCDS2894 P49789 "8598045|9671749|26181368" MGI:1277947 RGD:620448 FHIT 601153 121826 "3.6.1.29|3.6.2.1|3.9.1.-" +HGNC:3702 FHL1 four and a half LIM domains 1 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "SLIM1|KYO-T|bA535K18.1|FHL1B|XMPMA|FLH1A|MGC111107" "Four-and-a-half LIM domains 1|LIM protein SLIMMER" LIM domain containing 1218 1997-08-28 2016-10-12 2273 ENSG00000022267 OTTHUMG00000022504 uc004ezp.3 U60115 NM_001449 "CCDS14655|CCDS55505|CCDS55506|CCDS55507|CCDS76036|CCDS83493" Q13642 "8753811|9714789" MGI:1298387 RGD:2615 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=FHL1|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FHL1|LRG_739|http://www.lrg-sequence.org/LRG/LRG_739" FHL1 300163 140044 +HGNC:3703 FHL2 four and a half LIM domains 2 protein-coding gene gene with protein product Approved 2q12.2 02q12.2 "SLIM3|DRAL" LIM domain containing 1218 1997-08-28 2016-10-12 2274 ENSG00000115641 OTTHUMG00000153120 uc002tdd.4 XM_011510798 CCDS2070 Q14192 8753811 MGI:1338762 RGD:61963 LRG_740|http://www.lrg-sequence.org/LRG/LRG_740 FHL2 602633 159586 +HGNC:3704 FHL3 four and a half LIM domains 3 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 SLIM2 LIM domain containing 1218 1997-08-28 2014-11-19 2275 ENSG00000183386 OTTHUMG00000004434 uc001cck.4 BC011697 NM_004468 CCDS30678 Q13643 "8753811|10226657" MGI:1341092 RGD:1307180 FHL3 602790 +HGNC:17371 FHL5 four and a half LIM domains 5 protein-coding gene gene with protein product Approved 6q16.1 06q16.1 "FLJ33049|ACT|dJ393D12.2" LIM domain containing 1218 2003-11-26 2016-10-05 9457 ENSG00000112214 OTTHUMG00000015239 uc003pot.2 AF278541 NM_020482 CCDS5035 Q5TD97 MGI:1913192 RGD:1307056 FHL5 605126 +HGNC:17905 FHOD1 formin homology 2 domain containing 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FHOS 2002-02-19 2016-10-05 29109 ENSG00000135723 OTTHUMG00000137521 uc002esl.4 AF113615 NM_001318202 CCDS10834 Q9Y613 "10352228|16112087" MGI:2679008 RGD:1589776 FHOD1 606881 +HGNC:26178 FHOD3 formin homology 2 domain containing 3 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "FHOS2|KIAA1695|FLJ22297|FLJ22717" 2004-02-04 2016-10-05 80206 ENSG00000134775 OTTHUMG00000182381 uc002kzs.3 AK091899 XM_371114 "CCDS32816|CCDS62418|CCDS62419" Q2V2M9 11214970 MGI:1925847 RGD:2322319 FHOD3 609691 +HGNC:39442 FHP1 fumarate hydratase pseudogene 1 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-01-11 2011-01-11 100873790 ENSG00000234213 OTTHUMG00000016802 NG_032302 PGOHUM00000248575 +HGNC:25922 FIBCD1 fibrinogen C domain containing 1 protein-coding gene gene with protein product Approved 9q34.12 09q34.12 FLJ14810 Fibrinogen C domain containing 554 2004-01-06 2016-10-05 84929 ENSG00000130720 OTTHUMG00000020814 uc011mcc.2 AK027716 NM_032843 CCDS6937 Q8N539 12975309 MGI:2138953 RGD:1309097 FIBCD1 613357 +HGNC:33747 FIBIN fin bud initiation factor homolog (zebrafish) protein-coding gene gene with protein product Approved 11p14.2 11p14.2 MGC24932 2008-12-03 2015-01-30 387758 ENSG00000176971 OTTHUMG00000166120 uc001mrd.4 BC026873 NM_203371 CCDS7861 Q8TAL6 17196583 MGI:1914856 RGD:1563711 FIBIN 617085 +HGNC:3705 FIBP FGF1 intracellular binding protein protein-coding gene gene with protein product Approved 11q13.1 11q13.1 FGFIBP fibroblast growth factor (acidic) intracellular binding protein 1999-06-07 2016-04-29 2016-04-29 9158 ENSG00000172500 OTTHUMG00000166846 uc001oge.4 AF010187 NM_198897 "CCDS8118|CCDS8119" O43427 "9806903|25096995" MGI:1926233 RGD:628715 FIBP 608296 +HGNC:18416 FICD FIC domain containing protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "HYPE|HIP13" "huntingtin interacting protein 13|fic S-phase protein cell division homolog (E. coli)" 2007-12-04 2016-10-05 11153 ENSG00000198855 OTTHUMG00000169569 uc001tmx.2 AF049611 NM_007076 CCDS9116 Q9BVA6 9700202 MGI:1098550 RGD:1359391 FICD +HGNC:3707 FICP entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:16873 FIG4 FIG4 phosphoinositide 5-phosphatase protein-coding gene gene with protein product Approved 6q21 06q21 "SAC3|hSac3|dJ249I4.1|ALS11|CMT4J" KIAA0274 "KIAA0274|FIG4 homolog (S. cerevisiae)|FIG4 homolog, SAC1 lipid phosphatase domain containing (S. cerevisiae)" Phosphoinositide phosphatases 1079 2003-11-26 2007-07-30 2014-08-04 2016-10-12 9896 ENSG00000112367 OTTHUMG00000015352 uc003ptt.3 D87464 NM_014845 CCDS5078 Q92562 "9039502|11274189|17572665" MGI:2143585 RGD:1311375 LRG_241|http://www.lrg-sequence.org/LRG/LRG_241 FIG4 609390 159207 +HGNC:24669 FIGLA folliculogenesis specific bHLH transcription factor protein-coding gene gene with protein product Approved 2p13.3 02p13.3 bHLHc8 factor in the germline alpha folliculogenesis specific basic helix-loop-helix Basic helix-loop-helix proteins 420 2006-05-18 2015-06-16 2015-06-16 344018 ENSG00000183733 OTTHUMG00000153440 uc002she.1 BC039536 NM_001004311 CCDS46320 Q6QHK4 12468641 MGI:1349421 RGD:1564754 FIGLA 608697 292019 +HGNC:13285 FIGN fidgetin, microtubule severing factor protein-coding gene gene with protein product Approved 2q24.3 02q24.3 fidgetin AAA ATPases 413 2000-11-28 2016-05-27 2016-10-05 55137 ENSG00000182263 OTTHUMG00000074059 uc002uck.2 AK001267 NM_018086 CCDS2221 Q5HY92 11017077 MGI:1890647 RGD:1308174 FIGN 605295 +HGNC:13286 FIGNL1 fidgetin like 1 protein-coding gene gene with protein product Approved 7p12.2 07p12.2 fidgetin-like 1 AAA ATPases 413 2000-11-28 2016-02-03 2016-02-03 63979 ENSG00000132436 OTTHUMG00000022866 uc064dpv.1 AK023142 NM_001042762 CCDS5510 Q6PIW4 MGI:1890648 RGD:1307112 FIGNL1 615383 +HGNC:13287 FIGNL2 fidgetin like 2 other unknown Approved 12q13.13 12q13.13 fidgetin-like 2 AAA ATPases 413 2007-12-06 2016-02-03 2016-02-03 401720 ENSG00000261308 OTTHUMG00000175693 AK129980 NM_001013690 A6NMB9 11017077 MGI:3646919 RGD:1566321 +HGNC:21015 FILIP1 filamin A interacting protein 1 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "FILIP|KIAA1275" 2003-05-02 2015-08-25 27145 ENSG00000118407 OTTHUMG00000015056 uc003pia.4 AB033101 XM_029179 "CCDS4984|CCDS75480" Q7Z7B0 10574462 MGI:1917848 RGD:628597 FILIP1 607307 +HGNC:24589 FILIP1L filamin A interacting protein 1 like protein-coding gene gene with protein product Approved 3q12.1 03q12.1 "DOC-1|GIP130" "downregulated in ovarian cancer 1|GPBP-interacting protein of 130 kDa" 2006-12-07 2016-06-02 2016-06-02 11259 ENSG00000168386 OTTHUMG00000159055 uc003dto.5 NM_014890 "CCDS43117|CCDS43118|CCDS43119|CCDS63700|CCDS74969" Q4L180 "8314147|15935955|21832087" MGI:1925999 RGD:1565927 FILIP1L 612993 +HGNC:39730 FILIP1LP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:3709 FIM1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-16 +HGNC:3710 FIM3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:19124 FIP1L1 factor interacting with PAPOLA and CPSF1 protein-coding gene gene with protein product Approved 4q12 04q12 "DKFZp586K0717|FIP1" "FIP1 like 1 (S. cerevisiae)|FIP1L1 cleavage and polyadenylation specific factor subunit" 2003-03-03 2013-06-18 2015-08-25 81608 ENSG00000145216 OTTHUMG00000128701 uc003gzy.4 AF161429 NM_030917 "CCDS3491|CCDS47055|CCDS47056" Q6UN15 "11230166|14749727" MGI:1914149 RGD:1309336 FIP1L1 607686 121830 +HGNC:49627 FIRRE firre intergenic repeating RNA element non-coding RNA RNA, long non-coding Approved Xq26.2 Xq26.2 LINC01200 functional intergenic repeating RNA element firre intergenic RNA Long non-coding RNAs 788 2014-01-24 2014-04-11 2014-04-11 286467 ENSG00000213468 OTTHUMG00000022417 AK097911 NR_026975 24463464 MGI:2147989 +HGNC:21689 FIS1 fission, mitochondrial 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "CGI-135|H_NH0132A01.6|Fis1" "CGI-135 protein|mitochondrial fission molecule" TTC11 "tetratricopeptide repeat domain 11|fission 1 (mitochondrial outer membrane) homolog (yeast)|fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)" Tetratricopeptide repeat domain containing 769 2003-07-09 2006-01-24 2015-06-24 2015-06-24 51024 ENSG00000214253 OTTHUMG00000157106 uc003uyj.5 AF151893 NM_016068 CCDS43626 Q9Y3D6 "14996942|16010987" MGI:1913687 RGD:1306668 FIS1 609003 +HGNC:33714 FITM1 fat storage inducing transmembrane protein 1 protein-coding gene gene with protein product Approved 14q12 14q12 FIT1 fat-inducing transcript 1 2009-04-29 2016-03-24 2016-03-24 161247 ENSG00000139914 OTTHUMG00000133476 uc001wmf.3 NM_203402 CCDS9611 A5D6W6 18160536 MGI:1915930 RGD:1306911 FITM1 612028 +HGNC:16135 FITM2 fat storage inducing transmembrane protein 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ881L22.2|FIT2" fat inducing transcript 2 C20orf142 chromosome 20 open reading frame 142 2001-07-17 2009-04-29 2016-03-24 2016-03-24 128486 ENSG00000197296 OTTHUMG00000032522 uc002xlr.2 BC029662 XM_371399 CCDS33473 Q8N6M3 18160536 MGI:2444508 RGD:1307696 FITM2 612029 +HGNC:25917 FIZ1 FLT3 interacting zinc finger 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "FLJ14768|ZNF798" Zinc fingers C2H2-type 28 2006-08-20 2016-02-15 2016-02-15 84922 ENSG00000179943 OTTHUMG00000180858 uc002qli.4 AK027674 NM_032836 CCDS12928 Q96SL8 12566383 MGI:1344336 RGD:1306359 FIZ1 609133 286 +HGNC:17166 FJX1 four jointed box 1 protein-coding gene gene with protein product Approved 11p13 11p13 "FLJ22416|FLJ25593" putative secreted ligand homologous to fjx1 four jointed box 1 (Drosophila) 2001-11-21 2015-06-08 2016-10-05 24147 ENSG00000179431 OTTHUMG00000166310 uc001mwh.4 AJ245599 NM_014344 CCDS44570 Q86VR8 "7647465|10072791" MGI:1341907 RGD:1306113 FJX1 612206 +HGNC:3711 FKBP1A FK506 binding protein 1A protein-coding gene gene with protein product Approved 20p13 20p13 "FKBP-12|FKBP12|PKC12|PPIASE|FKBP12C" calstabin 1 FKBP1 "FK506-binding protein 1A (12kD)|FK506 binding protein 1A, 12kDa" FKBP prolyl isomerases 910 1992-09-14 2015-11-09 2016-07-28 2280 ENSG00000088832 OTTHUMG00000031666 uc002wey.4 M92423 NM_000801 "CCDS13014|CCDS74688" P62942 1930186 MGI:95541 RGD:2617 FKBP1A 186945 objectId:2609 5.2.1.8 +HGNC:41997 FKBP1A-SDCBP2 FKBP1A-SDCBP2 readthrough (NMD candidate) other readthrough Approved 20p13 20p13 2011-05-31 2013-05-09 2014-11-19 100528031 NR_037661 +HGNC:3714 FKBP1AP1 FK506 binding protein 1A pseudogene 1 pseudogene pseudogene Approved 19q13.43 19q13.43 FKBP1P1 "FK506-binding protein 1 pseudogene 1|FK506 binding protein 1 pseudogene 1|FK506 binding protein 1A, 12kDa pseudogene 1" 1992-09-14 2010-01-07 2015-11-10 2016-08-19 2282 ENSG00000269304 OTTHUMG00000183480 "M80196|M80201" NR_024162 1716149 PGOHUM00000295150 +HGNC:3715 FKBP1AP2 FK506 binding protein 1A pseudogene 2 pseudogene pseudogene Approved 15q24.1 15q24.1 FKBP1P2 "FK506-binding protein 1 pseudogene 2|FK506 binding protein 1 pseudogene 2|FK506 binding protein 1A, 12kDa pseudogene 2" 1992-09-14 2010-01-07 2015-11-10 2016-08-19 2283 ENSG00000259691 OTTHUMG00000172551 "M80197|M80202" NG_008623 1716149 PGOHUM00000293009 +HGNC:3716 FKBP1AP3 FK506 binding protein 1A pseudogene 3 pseudogene pseudogene Approved 13q14.13 13q14.13 FKBP1P3 "FK506-binding protein 1 pseudogene 3|FK506 binding protein 1 pseudogene 3|FK506 binding protein 1A, 12kDa pseudogene 3" 1992-09-15 2010-01-07 2015-11-10 2016-08-19 2284 ENSG00000230243 OTTHUMG00000016873 M80200 NG_006209 1716149 PGOHUM00000292148 +HGNC:3717 FKBP1AP4 FK506 binding protein 1A pseudogene 4 pseudogene pseudogene Approved 3q25.1 03q25.1 FKBP1P4 "FK506-binding protein 1 pseudogene 4|FK506 binding protein 1 pseudogene 4|FK506 binding protein 1A, 12kDa pseudogene 4" 1992-09-15 2010-01-07 2015-11-10 2016-08-19 2285 ENSG00000282502 OTTHUMG00000190905 "M80198|M80203" NG_006255 1716149 PGOHUM00000299224 +HGNC:3712 FKBP1B FK506 binding protein 1B protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "OTK4|FKBP12.6|PPIase|FKBP9" calstabin 2 FKBP1L "FK506-binding protein 1B (12.6 kD)|FK506 binding protein 1B, 12.6 kDa" FKBP prolyl isomerases 910 1999-02-15 2015-11-09 2015-11-09 2281 ENSG00000119782 OTTHUMG00000151889 uc002rer.4 D38037 NM_004116 "CCDS1706|CCDS33153|CCDS82423" P68106 7513996 MGI:1336205 RGD:61835 FKBP1B 600620 +HGNC:52378 FKBP1BP1 FK506 binding protein 1B pseudogene 1 pseudogene pseudogene Approved 14q21.1 14q21.1 2016-08-19 2016-08-19 107984636 ENSG00000258536 OTTHUMG00000170681 PGOHUM00000292639 +HGNC:21376 FKBP1C FK506 binding protein 1C other unknown Approved 6q12 06q12 bA184C23.2 FKBP prolyl isomerases 910 2003-11-26 2014-11-19 642489 ENSG00000198225 OTTHUMG00000014940 uc063phw.1 NG_008622 FKBP1C +HGNC:3718 FKBP2 FK506 binding protein 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "FKBP-13|PPIase" "FK506 binding protein 2 (13kD)|peptidyl-prolyl cis-trans isomerase|rapamycin-binding protein|proline isomerase" "FK506-binding protein 2 (13kD)|FK506 binding protein 2, 13kDa" FKBP prolyl isomerases 910 1992-09-14 2015-11-09 2016-01-15 2286 ENSG00000173486 OTTHUMG00000167814 uc001nyy.4 M75099 NM_004470 CCDS8063 P26885 1713687 MGI:95542 RGD:1560660 FKBP2 186946 +HGNC:3719 FKBP3 FK506 binding protein 3 protein-coding gene gene with protein product Approved 14q21.2 14q21.2 "FKBP-25|PPIase" "FK506-binding protein 3 (25kD)|FK506 binding protein 3, 25kDa" FKBP prolyl isomerases 910 1992-09-14 2015-11-09 2015-11-09 2287 ENSG00000100442 OTTHUMG00000140267 uc059bdf.1 M96256 NM_002013 CCDS9683 Q00688 "1374240|1532945" MGI:1353460 RGD:1304992 FKBP3 186947 +HGNC:3720 FKBP4 FK506 binding protein 4 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "FKBP59|FKBP52" "FK506-binding protein 4 (59kD)|FK506 binding protein 4, 59kDa" "Tetratricopeptide repeat domain containing|FKBP prolyl isomerases" "769|910" 1992-09-14 2015-11-09 2015-11-09 2288 ENSG00000004478 OTTHUMG00000090429 uc001qkz.4 M88279 XM_011520929 CCDS8512 Q02790 1279700 MGI:95543 RGD:628729 FKBP4 600611 +HGNC:44038 FKBP4P1 FK506 binding protein 4 pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 FK506 binding protein 4, 59kDa pseudogene 1 2012-05-29 2015-11-10 2015-11-10 100132656 ENSG00000251463 OTTHUMG00000161414 NG_008629 PGOHUM00000299969 +HGNC:50371 FKBP4P2 FK506 binding protein 4 pseudogene 2 pseudogene pseudogene Approved 9p12 09p12 FK506 binding protein 4, 59kDa pseudogene 2 2014-04-24 2015-11-10 2015-11-10 389727 ENSG00000269692 OTTHUMG00000013210 NG_021649 PGOHUM00000304189 +HGNC:50374 FKBP4P5 FK506 binding protein 4 pseudogene 5 pseudogene pseudogene Approved 9p12 09p12 FK506 binding protein 4, 59kDa pseudogene 5 2014-04-24 2015-11-10 2015-11-10 OTTHUMG00000013189 PGOHUM00000236088 +HGNC:50375 FKBP4P6 FK506 binding protein 4 pseudogene 6 pseudogene pseudogene Approved 9p11.1 09p11.1 FKBP4P4 "FK506 binding protein 4, 59kDa pseudogene 4|FK506 binding protein 4, 59kDa pseudogene 6" 2014-04-24 2015-11-10 2015-11-10 100132268 ENSG00000268234 OTTHUMG00000066806 NG_021617 PGOHUM00000304219 +HGNC:50376 FKBP4P7 FK506 binding protein 4 pseudogene 7 pseudogene pseudogene Approved 9q13 09q13 FKBP4P3 "FK506 binding protein 4, 59kDa pseudogene 3|FK506 binding protein 4, 59kDa pseudogene 7" 2014-04-24 2015-11-10 2015-11-10 441410 ENSG00000235256 OTTHUMG00000013190 NG_008628 PGOHUM00000303862 +HGNC:50377 FKBP4P8 FK506 binding protein 4 pseudogene 8 pseudogene pseudogene Approved 9q21.11 09q21.11 FK506 binding protein 4, 59kDa pseudogene 8 2014-04-24 2015-11-10 2015-11-10 643880 ENSG00000276457 OTTHUMG00000188569 NG_021618 PGOHUM00000303917 +HGNC:3721 FKBP5 FK506 binding protein 5 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "FKBP51|FKBP54|PPIase|P54|Ptg-10" FK506-binding protein 5 "Tetratricopeptide repeat domain containing|FKBP prolyl isomerases" "769|910" 1997-06-09 2001-11-28 2015-08-25 2289 ENSG00000096060 OTTHUMG00000014576 uc003oky.3 U42031 NM_004117 "CCDS4808|CCDS54996" Q13451 9001212 MGI:104670 RGD:1309155 FKBP5 602623 +HGNC:3722 FKBP6 FK506 binding protein 6 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "PPIase|FKBP36" "FK506 binding protein 6 (36kD)|peptidylprolyl cis-trans isomerase|rotamase|immunophilin FKBP36" "FK506-binding protein 6 (36kD)|FK506 binding protein 6, 36kDa" FKBP prolyl isomerases 910 1998-12-09 2015-11-09 2015-11-09 8468 ENSG00000077800 OTTHUMG00000150520 uc003tya.4 AF038847 NM_003602 "CCDS43595|CCDS47604|CCDS64670" O75344 "9782077|19001379" MGI:2137612 RGD:1308926 FKBP6 604839 +HGNC:3723 FKBP7 FK506 binding protein 7 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 FKBP23 FK506-binding protein 7 "EF-hand domain containing|FKBP prolyl isomerases" "863|910" 1998-12-09 2001-11-28 2014-11-19 51661 ENSG00000079150 OTTHUMG00000132577 uc002umk.4 AF092137 NM_181342 "CCDS2280|CCDS46462" Q9Y680 9806833 MGI:1336879 RGD:1305293 FKBP7 607062 +HGNC:3724 FKBP8 FK506 binding protein 8 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FKBP38|FKBPr38" FK506-binding protein 8 (38kD) "FK506-binding protein 8 (38kD)|FK506 binding protein 8, 38kDa" "Tetratricopeptide repeat domain containing|FKBP prolyl isomerases" "769|910" 1999-10-28 2015-11-09 2016-10-05 23770 ENSG00000105701 OTTHUMG00000183368 uc002njj.2 L37033 NM_012181 "CCDS32961|CCDS77266" Q14318 7543869 MGI:1341070 RGD:1308670 FKBP8 604840 +HGNC:3725 FKBP9 FK506 binding protein 9 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "FKBP60|FKBP63" "FK506-binding protein 9 (63 kD)|FK506 binding protein 9, 63 kDa" "EF-hand domain containing|FKBP prolyl isomerases" "863|910" 1999-10-28 2015-11-09 2016-10-05 11328 ENSG00000122642 OTTHUMG00000097847 uc003tdh.5 AF089745 NM_007270 "CCDS5439|CCDS64622|CCDS64623" O95302 12036304 MGI:1350921 RGD:1549757 FKBP9 616257 +HGNC:23568 FKBP9P1 FK506 binding protein 9 pseudogene 1 pseudogene pseudogene Approved 7p11.2 07p11.2 MGC20531 FKBP9L FK506 binding protein 9-like 2003-11-24 2014-04-01 2014-04-01 2014-04-01 360132 ENSG00000176826 OTTHUMG00000097835 BC011872 NR_003949 Q75LS8 12036304 PGOHUM00000232699 +HGNC:18169 FKBP10 FK506 binding protein 10 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "hFKBP65|FLJ22041|FKBP6|FLJ20683|FLJ23833" "FK506 binding protein 10 (65 kDa)|FK506 binding protein 10, 65 kDa" "EF-hand domain containing|FKBP prolyl isomerases" "863|910" 2002-03-12 2015-11-09 2016-10-12 60681 ENSG00000141756 OTTHUMG00000133497 uc002hxv.3 AB045981 NM_021939 CCDS11409 Q96AY3 "11071917|18786928" MGI:104769 RGD:1549751 "Osteogenesis Imperfecta Variant Database|https://oi.gene.le.ac.uk/home.php?select_db=FKBP10|LRG_12|http://www.lrg-sequence.org/LRG/LRG_12" FKBP10 607063 233035 +HGNC:18624 FKBP11 FK506 binding protein 11 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 FKBP19 "FK506 binding protein 11 (19 kDa)|FK506 binding protein 11, 19 kDa" FKBP prolyl isomerases 910 2002-06-05 2015-11-09 2015-11-09 51303 ENSG00000134285 OTTHUMG00000170402 uc001rsp.4 AF238079 NM_016594 "CCDS8773|CCDS44870|CCDS44871" Q9NYL4 "12036304|16596453" MGI:1913370 RGD:1306161 FKBP11 610571 +HGNC:18625 FKBP14 FK506 binding protein 14 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "FLJ20731|FKBP22" "FK506 binding protein 14 (22 kDa)|FK506 binding protein 14, 22 kDa" "EF-hand domain containing|FKBP prolyl isomerases" "863|910" 2002-06-05 2015-11-09 2016-10-12 55033 ENSG00000106080 OTTHUMG00000023442 uc003tal.3 AK000738 NM_017946 CCDS5423 Q9NWM8 12036304 MGI:2387639 RGD:1311705 LRG_454|http://www.lrg-sequence.org/LRG/LRG_454 FKBP14 614505 304165 +HGNC:23397 FKBP15 FK506 binding protein 15 protein-coding gene gene with protein product Approved 9q32 09q32 "PPP1R76|FKBP133|WAFL" "protein phosphatase 1, regulatory subunit 76|WASP and FKBP-like protein" KIAA0674 "KIAA0674|FK506 binding protein 15, 133kDa" "Protein phosphatase 1 regulatory subunits|FKBP prolyl isomerases" "694|910" 2004-05-28 2006-10-31 2015-11-09 2016-10-05 23307 ENSG00000119321 OTTHUMG00000020518 uc004bgs.3 AB014574 NM_015258 CCDS48007 Q5T1M5 "16756961|20376207" MGI:2444782 RGD:1304816 FKBP15 +HGNC:13949 FKBPL FK506 binding protein like protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "DIR1|NG7|WISp39" WAF-1/CIP1 stabilizing protein 39 FK506-binding protein like "Tetratricopeptide repeat domain containing|FKBP prolyl isomerases" "769|910" 2001-04-06 2001-11-28 2016-10-05 63943 ENSG00000204315 OTTHUMG00000031129 uc003nzr.4 AF139374 NM_022110 CCDS4738 Q9UIM3 9056895 MGI:1932127 RGD:1303227 FKBPL 617076 +HGNC:17997 FKRP fukutin related protein protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "LGMD2I|MDC1C" 2003-12-04 2016-10-12 79147 ENSG00000181027 OTTHUMG00000183177 uc002pfn.3 AJ314847 NM_024301 CCDS12691 Q9H9S5 "11592034|11741828" MGI:2447586 RGD:1305852 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/FKRP|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=FKRP|LRG_761|http://www.lrg-sequence.org/LRG/LRG_761" FKRP 606596 121835 +HGNC:3622 FKTN fukutin protein-coding gene gene with protein product Approved 9q31.2 09q31.2 LGMD2M FCMD Fukuyama type congenital muscular dystrophy (fukutin) 1993-12-01 2007-11-21 2007-11-21 2016-10-12 2218 ENSG00000106692 OTTHUMG00000020425 uc004bcs.3 NM_006731 CCDS6766 O75072 "8275093|17036286|17044012" MGI:2179507 RGD:1310087 "FCMD - Fukuyama type congenital muscular dystrophy |http://www.LOVD.nl/FCMD |Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=FKTN|LRG_434|http://www.lrg-sequence.org/LRG/LRG_434" FKTN 607440 121775 +HGNC:24671 FLAD1 flavin adenine dinucleotide synthetase 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "PP591|FAD1" "Fad1, flavin adenine dinucleotide synthetase, homolog (yeast)|FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae)|flavin adenine dinucleotide synthetase" 2005-07-29 2013-03-05 2016-10-05 80308 ENSG00000160688 OTTHUMG00000037416 uc001fge.3 NM_025207 "CCDS1078|CCDS1079|CCDS53371|CCDS53372" Q8NFF5 MGI:2443030 RGD:1593292 FLAD1 610595 2.7.7.2 +HGNC:27310 FLCN folliculin protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "BHD|MGC17998|MGC23445" DENN/MADD domain containing 504 2004-08-05 2016-10-12 201163 ENSG00000154803 OTTHUMG00000059275 uc002gra.5 AF517523 NM_144606 "CCDS32579|CCDS32580" Q8NFG4 17028174 MGI:2442184 RGD:735088 "LOVD - Leiden Open Variation Database|https://grenada.lumc.nl/LOVD2/shared1/home.php?select_db=FLCN|The Folliculin Mutation Database|http://www.skingenedatabase.com/home.php?select_db=FLCN|LRG_325|http://www.lrg-sequence.org/LRG/LRG_325" FLCN 607273 121839 +HGNC:3748 FLG filaggrin protein-coding gene gene with protein product Approved 1q21.3 01q21.3 EF-hand domain containing 863 1989-10-18 2016-10-12 2312 ENSG00000143631 OTTHUMG00000012202 uc001ezu.1 XM_048104 NM_002016 CCDS30860 P20930 "2740331|2248957|16444271" RGD:2620 LRG_1028|http://www.lrg-sequence.org/LRG/LRG_1028 FLG 135940 121844 +HGNC:27913 FLG-AS1 FLG antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q21.3 01q21.3 FLG antisense RNA 1 (non-protein coding) 2012-03-07 2012-08-15 2014-11-19 339400 ENSG00000237975 OTTHUMG00000012203 uc057kzw.1 "BC041408|AK056431" NR_103778 12477932 +HGNC:33276 FLG2 filaggrin family member 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 IFPS EF-hand domain containing 863 2007-08-21 2015-09-11 388698 ENSG00000143520 OTTHUMG00000012245 uc001ezw.5 AY827490 NM_001014342 CCDS30861 Q5D862 19384417 MGI:3645678 RGD:1566121 FLG2 616284 +HGNC:3749 FLI1 Fli-1 proto-oncogene, ETS transcription factor protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "SIC-1|EWSR2" Friend leukemia virus integration 1 ETS transcription factor family 534 1991-06-05 2013-08-07 2016-10-12 2313 ENSG00000151702 OTTHUMG00000165792 uc010sbu.3 M98833 NM_002017 "CCDS44768|CCDS53725|CCDS59230|CCDS59231" Q01543 1765382 MGI:95554 RGD:1309837 LRG_646|http://www.lrg-sequence.org/LRG/LRG_646 FLI1 193067 121846 +HGNC:3750 FLII FLII, actin remodeling protein protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "FLI|FLIL|Fli1|MGC39265" "flightless I (Drosophila) homolog|flightless I homolog (Drosophila)|flightless I actin binding protein" Gelsolin/villins 950 1995-10-11 2016-05-05 2016-05-05 2314 ENSG00000177731 OTTHUMG00000059389 uc002gsr.3 U01184 NM_002018 "CCDS11192|CCDS58521|CCDS58522" Q13045 "7825574|26521845|22581781" MGI:1342286 RGD:1307590 FLII 600362 121850 +HGNC:3754 FLNA filamin A protein-coding gene gene with protein product Approved Xq28 Xq28 ABP-280 "actin binding protein 280|alpha filamin" "FLN1|FLN|OPD2|OPD1" "filamin A, alpha (actin binding protein 280)|filamin A, alpha" 1993-03-18 2015-12-16 2015-12-16 2316 ENSG00000196924 OTTHUMG00000022712 uc010nuu.1 X70082 NM_001456 "CCDS44021|CCDS48194" P21333 "8406501|12612583" MGI:95556 RGD:1560614 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FLNA FLNA 300017 121853 +HGNC:3755 FLNB filamin B protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "TAP|TABP|ABP-278|FH1" "actin binding protein 278|beta filamin" "FLN1L|LRS1" "filamin B, beta (actin binding protein 278)|Larsen syndrome 1 (autosomal dominant)|filamin B, beta" 1997-06-20 2015-12-16 2015-12-16 2317 ENSG00000136068 OTTHUMG00000159158 uc003djj.3 AF043045 NM_001457 "CCDS2885|CCDS54599|CCDS54600|CCDS54601" O75369 "8327473|10449914|14991055|16801345" MGI:2446089 RGD:1311915 FLNB 603381 121860 +HGNC:40239 FLNB-AS1 FLNB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.3 03p14.3 FLNB antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100506906 ENSG00000244161 OTTHUMG00000159156 uc003djn.5 +HGNC:3756 FLNC filamin C protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "ABP-280|ABPL" "actin binding protein 280|gamma filamin" FLN2 "filamin C, gamma (actin binding protein 280)|filamin C, gamma" 1993-08-24 2015-12-16 2016-10-12 2318 ENSG00000128591 OTTHUMG00000023627 uc003vnz.5 AB208865 NM_001458 "CCDS43644|CCDS47705" Q14315 "7689010|8088838" MGI:95557 RGD:1308807 LRG_870|http://www.lrg-sequence.org/LRG/LRG_870 FLNC 102565 121867 +HGNC:3757 FLOT1 flotillin 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 Flotillins 1114 2000-05-30 2016-10-05 10211 ENSG00000137312 OTTHUMG00000031151 uc003nrm.4 AF089750 XM_017010157 CCDS4688 O75955 MGI:1100500 RGD:70991 FLOT1 606998 +HGNC:3758 FLOT2 flotillin 2 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "ESA|ESA1|ECS-1|ECS1" "Flotillin 2 (epidermal surface antigen 1)|membrane component, chromosome 17, surface marker 1 (35kD protein identified by monoclonal antibody ECS-1)" M17S1 Flotillins 1114 1991-05-09 2015-08-05 2319 ENSG00000132589 OTTHUMG00000132674 uc002hdc.4 M60922 NM_004475 "CCDS11245|CCDS82097" Q14254 1769667 MGI:103309 RGD:70993 FLOT2 131560 +HGNC:3760 FLRT1 fibronectin leucine rich transmembrane protein 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "MGC21624|SPG68" Fibronectin type III domain containing 555 1999-10-29 2015-09-11 23769 ENSG00000126500 OTTHUMG00000167788 uc001nyi.2 AF169675 NM_013280 CCDS8057 Q9NZU1 "10644439|24482476" MGI:3026647 RGD:1565152 FLRT1 604806 403385 +HGNC:3761 FLRT2 fibronectin leucine rich transmembrane protein 2 protein-coding gene gene with protein product Approved 14q31.3 14q31.3 Fibronectin type III domain containing 555 1999-10-29 2016-01-15 23768 ENSG00000185070 OTTHUMG00000171372 uc001xvr.4 AF169676 XM_017021129 CCDS9877 O43155 "10644439|16872596" MGI:3603594 RGD:1308574 FLRT2 604807 +HGNC:3762 FLRT3 fibronectin leucine rich transmembrane protein 3 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 Fibronectin type III domain containing 555 1999-10-29 2016-10-05 23767 ENSG00000125848 OTTHUMG00000031914 uc002wow.3 AF169677 NM_013281 CCDS13121 Q9NZU0 10644439 MGI:1918686 RGD:1566005 FLRT3 604808 353751 +HGNC:3763 FLT1 fms related tyrosine kinase 1 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 VEGFR1 "vascular endothelial growth factor receptor 1|vascular permeability factor receptor" FLT "fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor)|fms-related tyrosine kinase 1" "Receptor Tyrosine Kinases|I-set domain containing|Immunoglobulin like domain containing" "321|593|594" 1986-01-01 2016-01-14 2016-10-12 2321 ENSG00000102755 OTTHUMG00000016648 uc001usb.4 AF063657 NM_002019 "CCDS9330|CCDS53860|CCDS53861|CCDS73556" P17948 2158038 MGI:95558 RGD:2621 "The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=FLT1|LRG_425|http://www.lrg-sequence.org/LRG/LRG_425" FLT1 165070 objectId:1812 2.7.10.1 +HGNC:44609 FLT1P1 fms related tyrosine kinase 1 pseudogene 1 pseudogene pseudogene Approved 3p21.31 03p21.31 LOC391533 fms-related tyrosine kinase 1 pseudogene 1 2012-11-19 2016-01-14 2016-01-14 391533 ENSG00000229515 OTTHUMG00000156234 NG_005897 24312300 PGOHUM00000237611 +HGNC:3765 FLT3 fms related tyrosine kinase 3 protein-coding gene gene with protein product Approved 13q12.2 13q12.2 "STK1|FLK2|CD135" fms-related tyrosine kinase 3 "Receptor Tyrosine Kinases|CD molecules|Immunoglobulin like domain containing" "321|471|594" 1990-07-30 2016-01-14 2016-10-12 2322 ENSG00000122025 OTTHUMG00000016646 uc001urw.3 U02687 XM_011535015 CCDS31953 P36888 8394751 MGI:95559 RGD:61308 LRG_457|http://www.lrg-sequence.org/LRG/LRG_457 FLT3 136351 138366 objectId:1807 CD135 2.7.10.1 +HGNC:3766 FLT3LG fms related tyrosine kinase 3 ligand protein-coding gene gene with protein product Approved 19q13.3 19q13.3 fms-related tyrosine kinase 3 ligand Endogenous ligands 542 1994-07-21 2016-01-14 2016-01-14 2323 ENSG00000090554 OTTHUMG00000186490 uc002pnu.4 U04806 XM_005258680 "CCDS12767|CCDS62753" P49771 "8145851|7824267" MGI:95560 RGD:2322792 FLT3LG 600007 +HGNC:3767 FLT4 fms related tyrosine kinase 4 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "VEGFR3|PCL" fms-related tyrosine kinase 4 "Receptor Tyrosine Kinases|I-set domain containing|Immunoglobulin like domain containing" "321|593|594" 1991-10-25 2016-01-14 2016-10-05 2324 ENSG00000037280 OTTHUMG00000130931 uc003mlz.4 X68203 XM_011534478 "CCDS4457|CCDS43412" P35916 1319394 MGI:95561 RGD:621737 FLT4 136352 121872 objectId:1814 2.7.10.1 +HGNC:24682 FLVCR1 feline leukemia virus subgroup C cellular receptor 1 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "FLVCR|MFSD7B|PCA" AXPC1 ataxia, posterior column 1, with retinitis pigmentosa Solute carriers 752 2007-05-01 2015-09-11 28982 ENSG00000162769 OTTHUMG00000036924 uc001hjt.3 AF118637 NM_014053 CCDS1510 Q9Y5Y0 "10400745|10648427|21070897" MGI:2444881 RGD:1596541 FLVCR1 609144 SLC49A1 246647 objectId:1910 +HGNC:39077 FLVCR1-AS1 FLVCR1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 1q32.3 01q32.3 LQK1 NCRNA00292 "non-protein coding RNA 292|FLVCR1 antisense RNA 1 (non-protein coding)|FLVCR1 antisense RNA 1" 2010-10-05 2011-08-11 2012-10-15 2014-11-18 642946 ENSG00000198468 OTTHUMG00000036923 uc057pgy.1 NR_027285 Q8TAF5 11943475 610864 +HGNC:20105 FLVCR2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "FLJ20371|MFSD7C" C14orf58 "chromosome 14 open reading frame 58|feline leukemia virus subgroup C cellular receptor 2|feline leukemia virus subgroup C cellular receptor family, member 2" Solute carriers 752 2002-12-18 2007-05-01 2015-11-18 2015-11-18 55640 ENSG00000119686 OTTHUMG00000171487 uc001xrs.3 AK000378 NM_017791 "CCDS9844|CCDS55933" Q9UPI3 "16439531|20206334" MGI:2384974 RGD:735098 FLVCR2 610865 SLC49A2 227058 objectId:1911 +HGNC:25404 FLYWCH1 FLYWCH-type zinc finger 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 DKFZp761A132 Zinc fingers 26 2005-02-08 2007-06-21 2007-06-21 2013-01-10 84256 ENSG00000059122 OTTHUMG00000177364 uc002csc.4 AL136585 NM_032296 "CCDS45390|CCDS76809" Q4VC44 "11230166|10997877" MGI:2442638 RGD:1309385 FLYWCH1 +HGNC:31915 FLYWCH1L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-04 +HGNC:38033 FLYWCH1P1 FLYWCH-type zinc finger 1 pseudogene 1 pseudogene pseudogene Approved 3q26.33 03q26.33 2010-03-23 2014-11-19 100130898 ENSG00000239516 OTTHUMG00000157928 NG_022230 PGOHUM00000237881 +HGNC:25178 FLYWCH2 FLYWCH family member 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 2007-06-21 2007-06-21 2014-11-18 114984 ENSG00000162076 OTTHUMG00000128962 uc002csa.4 BC014089 NM_138439 CCDS10482 Q96CP2 12477932 MGI:1924167 RGD:6497122 FLYWCH2 +HGNC:26946 FMC1 formation of mitochondrial complex V assembly factor 1 homolog protein-coding gene gene with protein product Approved 7q34 07q34 HSPC268 formation of mitochondrial complexes 1 homolog (S. cerevisiae) C7orf55 "chromosome 7 open reading frame 55|formation of mitochondrial complex V assembly factor 1" 2007-07-13 2016-06-16 2016-06-16 2016-06-16 154791 ENSG00000164898 OTTHUMG00000151719 uc003vuw.5 AF161386 NM_197964 CCDS5853 Q96HJ9 11096112 MGI:1913367 RGD:1559476 +HGNC:3768 FMN1 formin 1 protein-coding gene gene with protein product Approved 15q13.3 15q13.3 "DKFZP686C2281|FLJ45135|MGC125288|MGC125289" limb deformity protein "LD|FMN" formin (limb deformity) 1990-03-12 2005-01-22 2005-01-20 2013-06-13 342184 ENSG00000248905 OTTHUMG00000172201 uc001zhf.6 AH002864 NM_001103184 "CCDS45209|CCDS61581|CCDS61582" Q68DA7 1673046 MGI:101815 RGD:1306349 FMN1 136535 +HGNC:14074 FMN2 formin 2 protein-coding gene gene with protein product Approved 1q43 01q43 2000-11-28 2015-08-25 56776 ENSG00000155816 OTTHUMG00000039883 uc010pyd.3 AF218942 XM_371352 CCDS31069 Q9NZ56 10781961 MGI:1859252 RGD:2322099 FMN2 606373 420169 +HGNC:1212 FMNL1 formin like 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 C17orf1 "C17orf1B|FMNL" "formin-like|formin-like 1" 1999-06-25 2003-12-03 2015-11-12 2015-11-12 752 ENSG00000184922 OTTHUMG00000180196 uc002iin.4 AJ008112 NM_005892 CCDS11497 O95466 "9799091|12684686" MGI:1888994 RGD:1311042 FMNL1 604656 +HGNC:18267 FMNL2 formin like 2 protein-coding gene gene with protein product Approved 2q23.3 02q23.3 KIAA1902 FHOD2 "formin homology 2 domain containing 2|formin-like 2" 2002-02-19 2003-12-03 2015-11-12 2015-11-12 114793 ENSG00000157827 OTTHUMG00000154035 uc002tye.3 AB067489 NM_052905 CCDS46429 Q96PY5 12684686 MGI:1918659 RGD:1560248 FMNL2 616285 +HGNC:23698 FMNL3 formin like 3 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "DKFZp762B245|MGC45819|WBP3" formin-like 3 2003-12-02 2015-11-12 2015-11-12 91010 ENSG00000161791 OTTHUMG00000169651 uc001ruw.2 AK128195 NM_175736 "CCDS41780|CCDS44874" Q8IVF7 12684686 MGI:109569 RGD:1583854 FMNL3 616288 +HGNC:3769 FMO1 flavin containing monooxygenase 1 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 1991-03-18 2015-09-07 2326 ENSG00000010932 OTTHUMG00000035502 uc009wvz.4 M64082 NM_002021 "CCDS1294|CCDS60351" Q01740 MGI:1310002 RGD:2622 FMO1 136130 1.14.13.8 +HGNC:3770 FMO2 flavin containing monooxygenase 2 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 flavin containing monooxygenase 2 (non-functional) 1994-05-06 2015-11-04 2016-04-25 2327 ENSG00000094963 OTTHUMG00000035504 uc057ngi.1 BC005894 NM_001460 CCDS1293 Q99518 "1417778|9804831" MGI:1916776 RGD:628600 FMO2 603955 +HGNC:3771 FMO3 flavin containing monooxygenase 3 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 1992-10-16 2015-09-07 2328 ENSG00000007933 OTTHUMG00000035505 uc001ghi.3 BC032016 NM_006894 CCDS1292 P31513 "8486388|9417913" MGI:1100496 RGD:619761 The Homo sapients FMO3 Allelic Variant Database|http://databases.lovd.nl/shared/genes/FMO3 FMO3 136132 121876 2.6.1.16 +HGNC:3772 FMO4 flavin containing monooxygenase 4 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 FMO2 1991-08-01 2015-09-11 2329 ENSG00000076258 OTTHUMG00000035506 uc001gho.4 BC002780 NM_002022 CCDS1295 P31512 8311461 MGI:2429497 RGD:628601 FMO4 136131 1.14.13.8 +HGNC:3773 FMO5 flavin containing monooxygenase 5 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 1994-05-05 2015-09-11 2330 ENSG00000131781 OTTHUMG00000014607 uc001epi.4 Z47553 NM_001461 "CCDS926|CCDS44209|CCDS44210" P49326 "8786146|9119381" MGI:1310004 RGD:628602 FMO5 603957 +HGNC:24024 FMO6P flavin containing monooxygenase 6 pseudogene pseudogene pseudogene Approved 1q24.3 01q24.3 FMO6 flavin containing monooxygenase 6 2005-05-19 2006-12-04 2006-12-04 2014-11-18 388714 ENSG00000117507 OTTHUMG00000035503 AK130511 XM_371326 O60774 15077013 MGI:2681841 RGD:1559491 FMO6P +HGNC:32208 FMO7P flavin containing monooxygenase 7 pseudogene pseudogene pseudogene Approved 1q24.1 01q24.1 2008-12-08 2014-11-19 100337589 ENSG00000230231 OTTHUMG00000033266 NG_016467 15077013 +HGNC:32209 FMO8P flavin containing monooxygenase 8 pseudogene pseudogene pseudogene Approved 1q24.1 01q24.1 2008-12-08 2014-11-19 100129007 ENSG00000238087 OTTHUMG00000033268 NG_009755 15077013 +HGNC:32210 FMO9P flavin containing monooxygenase 9 pseudogene pseudogene pseudogene Approved 1q24.1 01q24.1 RP11-45J16.2 2005-08-15 2014-11-19 116123 ENSG00000215834 OTTHUMG00000078309 BC014341 NR_002925 15077013 +HGNC:32211 FMO10P flavin containing monooxygenase 10, pseudogene pseudogene pseudogene Approved 1q24.1 01q24.1 2008-12-08 2009-12-08 2014-11-18 100128181 ENSG00000234984 OTTHUMG00000034323 NG_009811 15077013 +HGNC:32212 FMO11P flavin containing monooxygenase 11, pseudogene pseudogene pseudogene Approved 1q24.1 01q24.1 2008-12-08 2009-12-08 2014-11-18 100337590 ENSG00000232148 OTTHUMG00000034317 NG_016468 15077013 +HGNC:3774 FMOD fibromodulin protein-coding gene gene with protein product Approved 1q32.1 01q32.1 SLRR2E fibromodulin proteoglycan Small leucine rich repeat proteoglycans 573 1994-04-15 2016-10-05 2331 ENSG00000122176 OTTHUMG00000035910 uc001gzr.5 U05291 NM_002023 CCDS30976 Q06828 7851907 MGI:1328364 RGD:619769 FMOD 600245 +HGNC:3775 FMR1 fragile X mental retardation 1 protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 "FMRP|FRAXA|MGC87458" "POF1|POF" premature ovarian failure 1 1992-01-17 2016-10-12 2332 ENSG00000102081 OTTHUMG00000022606 uc010nst.4 X69962 NM_002024 "CCDS14682|CCDS55518|CCDS55519|CCDS76039" Q06787 1572655 MGI:95564 RGD:2623 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FMR1|LRG_762|http://www.lrg-sequence.org/LRG/LRG_762" FMR1 309550 121878 +HGNC:39081 FMR1-AS1 FMR1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq27.3 Xq27.3 "ASFMR1|FMR4" antisense fragile X mental retardation protein "FMR1AS|FMR1-AS" "FMR1 antisense RNA (non-protein coding)|FMR1 antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2010-10-05 2010-11-25 2012-08-15 2014-11-19 100126270 ENSG00000268066 OTTHUMG00000182466 uc065blh.1 NR_024499 "17921506|18213394" 300805 +HGNC:41333 FMR1-IT1 FMR1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved Xq27.3 Xq27.3 FMR1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 106478973 ENSG00000236337 OTTHUMG00000046184 uc065bma.1 +HGNC:26372 FMR1NB fragile X mental retardation 1 neighbor protein-coding gene gene with protein product Approved Xq27.3-q28 Xq27.3-q28 "FLJ25736|NY-SAR-35|CT37" cancer/testis antigen 37 2004-02-11 2016-10-11 158521 ENSG00000176988 OTTHUMG00000022608 uc004fcm.3 NM_152578 CCDS14683 Q8N0W7 12601173 MGI:2672032 RGD:1564059 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FMR1NB FMR1NB +HGNC:3777 FMR3 fragile X mental retardation associated 3 phenotype phenotype only Approved Xq28 Xq28 2000-07-31 2013-03-18 56247 "11015457|16469443" 159590 +HGNC:3778 FN1 fibronectin 1 protein-coding gene gene with protein product Approved 2q35 02q35 "MSF|CIG|LETS|GFND2|FINC" "migration-stimulating factor|cold-insoluble globulin" "Endogenous ligands|Fibronectin type III domain containing" "542|555" 2001-06-22 2016-10-05 2335 ENSG00000115414 OTTHUMG00000133054 uc002vfa.4 NM_212476 "CCDS2399|CCDS2400|CCDS42813|CCDS42814|CCDS46510|CCDS46512|CCDS77522|CCDS77523|CCDS77525|CCDS77526" P02751 "2992939|3003095" MGI:95566 RGD:2624 FN1 135600 159592 +HGNC:24822 FN3K fructosamine 3 kinase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 2004-11-29 2016-10-05 64122 ENSG00000167363 OTTHUMG00000177847 uc010wvs.2 AJ404615 NM_022158 CCDS11818 Q9H479 "11522682|14641062" MGI:1926834 RGD:1559983 FN3K 608425 +HGNC:25700 FN3KRP fructosamine 3 kinase related protein protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FLJ12171|FN3KL" 2009-01-14 2015-09-07 79672 ENSG00000141560 OTTHUMG00000177846 uc002kfu.4 AY360465 NM_024619 CCDS11817 Q9HA64 14633848 MGI:2679256 RGD:1304570 FN3KRP 611683 +HGNC:17069 FNBP1 formin binding protein 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "FBP17|KIAA0554" F-BAR domain containing 1288 2002-11-25 2016-10-05 23048 ENSG00000187239 OTTHUMG00000020800 uc004byw.2 AB011126 XM_011518399 CCDS48040 Q96RU3 "9628581|11438682" MGI:109606 RGD:621350 FNBP1 606191 +HGNC:20851 FNBP1L formin binding protein 1 like protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "TOCA1|FLJ20275" C1orf39 "chromosome 1 open reading frame 39|formin binding protein 1-like" F-BAR domain containing 1288 2003-05-08 2004-11-17 2016-01-21 2016-01-21 54874 ENSG00000137942 OTTHUMG00000010863 uc010otk.3 NM_017737 "CCDS53343|CCDS53344|CCDS60192" Q5T0N5 14654988 MGI:1925642 RGD:1305386 FNBP1L 608848 +HGNC:44528 FNBP1P1 formin binding protein 1 pseudogene 1 pseudogene pseudogene Approved 2p13.1 02p13.1 2012-11-14 2012-11-14 100533642 ENSG00000257800 OTTHUMG00000170236 PGOHUM00000240689 +HGNC:44527 FNBP1P2 formin binding protein 1 pseudogene 2 pseudogene pseudogene Approved 3p23 03p23 2012-11-14 2016-10-05 100419875 NG_025560 PGOHUM00000298981 +HGNC:19752 FNBP4 formin binding protein 4 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 KIAA1014 2002-11-25 2016-10-05 23360 ENSG00000109920 OTTHUMG00000166533 uc009ylv.4 BC037404 XR_001747804 CCDS41644 Q8N3X1 10231032 MGI:1860513 RGD:1309238 FNBP4 615265 +HGNC:21184 FNDC1 fibronectin type III domain containing 1 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "bA243O10.1|KIAA1866|dJ322A24.1" FNDC2 fibronectin type III domain containing 2 Fibronectin type III domain containing 555 2003-05-22 2016-10-05 84624 ENSG00000164694 OTTHUMG00000015927 uc010kjv.4 AB058769 NM_032532 CCDS47512 Q4ZHG4 11347906 MGI:1915905 RGD:1310640 FNDC1 609991 +HGNC:41460 FNDC1-IT1 FNDC1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6q25.3 06q25.3 FNDC1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874312 ENSG00000235086 OTTHUMG00000015929 uc063sou.1 +HGNC:20296 FNDC3A fibronectin type III domain containing 3A protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "bA203I16.5|KIAA0970" FNDC3 fibronectin type III domain containing 3 Fibronectin type III domain containing 555 2004-04-16 2005-01-22 2005-01-20 2016-10-05 22862 ENSG00000102531 OTTHUMG00000016911 uc001vcm.3 AB023187 NM_014923 "CCDS9413|CCDS41886" Q9Y2H6 MGI:1196463 RGD:1304736 FNDC3A 615794 +HGNC:24670 FNDC3B fibronectin type III domain containing 3B protein-coding gene gene with protein product Approved 3q26.31 03q26.31 "FAD104|DKFZp762K137|FLJ23399|PRO4979|YVTM2421" Fibronectin type III domain containing 555 2005-01-20 2015-09-11 64778 ENSG00000075420 OTTHUMG00000156761 uc003fhz.5 AF543840 NM_022763 CCDS3217 Q53EP0 15527760 MGI:1919257 RGD:1311673 FNDC3B 611909 +HGNC:35452 FNDC3CP fibronectin type III domain containing 3C, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 2010-03-12 2014-11-19 100421340 ENSG00000223592 OTTHUMG00000021886 NG_026723 +HGNC:20239 FNDC4 fibronectin type III domain containing 4 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "FLJ22362|FRCP1" Fibronectin type III domain containing 555 2004-01-13 2015-09-11 64838 ENSG00000115226 OTTHUMG00000097787 uc002rkx.4 AK026015 NM_022823 CCDS1756 Q9H6D8 12384288 MGI:1917195 FNDC4 611905 +HGNC:20240 FNDC5 fibronectin type III domain containing 5 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 FRCP2 irisin Fibronectin type III domain containing 555 2004-01-13 2016-10-05 252995 ENSG00000160097 OTTHUMG00000004015 uc001bwf.3 AK092102 NM_153756 "CCDS369|CCDS65483" Q8NAU1 "12384288|22237023|24120943" MGI:1917614 RGD:708525 FNDC5 611906 +HGNC:26668 FNDC7 fibronectin type III domain containing 7 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 FLJ35838 Fibronectin type III domain containing 555 2005-05-23 2014-11-19 163479 ENSG00000143107 OTTHUMG00000011120 uc001dvx.4 NM_173532 CCDS44185 Q5VTL7 12477932 MGI:2443535 RGD:1309189 FNDC7 +HGNC:25286 FNDC8 fibronectin type III domain containing 8 protein-coding gene gene with protein product Approved 17q12 17q12 DKFZp434H2215 Fibronectin type III domain containing 555 2006-01-12 2014-11-19 54752 ENSG00000073598 OTTHUMG00000132932 uc002hix.4 BC024002 NM_017559 CCDS11290 Q8TC99 12477932 MGI:1926169 RGD:1310708 FNDC8 +HGNC:33547 FNDC9 fibronectin type III domain containing 9 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 MGC27121 C5orf40 chromosome 5 open reading frame 40 Fibronectin type III domain containing 555 2007-07-26 2011-01-25 2011-01-25 2014-11-19 408263 ENSG00000172568 OTTHUMG00000130248 uc003lwu.3 BC022570 NM_001001343 CCDS4337 Q8TBE3 MGI:2443410 RGD:2318580 FNDC9 +HGNC:42951 FNDC10 fibronectin type III domain containing 10 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 C1orf233 chromosome 1 open reading frame 233 2012-02-03 2016-06-07 2016-06-07 2016-06-07 643988 ENSG00000228594 OTTHUMG00000154864 uc021oes.2 NM_001242659 CCDS55559 F2Z333 MGI:2444790 RGD:1589420 +HGNC:28764 FNDC11 fibronectin type III domain containing 11 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 MGC5356 C20orf195 chromosome 20 open reading frame 195 2005-12-23 2016-06-07 2016-06-07 2016-06-07 79025 ENSG00000125531 OTTHUMG00000032980 uc002yfj.4 NM_024059 CCDS13526 Q9BVV2 12477932 MGI:3051572 RGD:1564340 +HGNC:29418 FNIP1 folliculin interacting protein 1 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 KIAA1961 DENN/MADD domain containing 504 2005-08-09 2016-10-05 96459 ENSG00000217128 OTTHUMG00000186338 uc003kvs.2 DQ145719 NM_133372 "CCDS34226|CCDS34227" Q8TF40 "11853319|17028174" MGI:2444668 RGD:2318339 FNIP1 610594 +HGNC:29280 FNIP2 folliculin interacting protein 2 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "KIAA1450|FNIPL|MAPO1" O6-methylguanine-induced apoptosis 1 DENN/MADD domain containing 504 2008-03-06 2015-09-11 57600 ENSG00000052795 OTTHUMG00000161983 uc003iqe.5 AB040883 NM_020840 CCDS47155 Q9P278 18403135 MGI:2683054 RGD:1562174 FNIP2 612768 +HGNC:3780 FNL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:3782 FNTA farnesyltransferase, CAAX box, alpha protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "FPTA|PGGT1A|PTAR2" "protein prenyltransferase alpha subunit repeat containing 2|protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha" Prenyltransferase alpha subunit repeat containing 687 1993-04-08 2016-01-27 2339 ENSG00000168522 OTTHUMG00000165279 uc003xps.5 L10413 NM_002027 CCDS6140 P49354 8276393 MGI:104683 RGD:2625 FNTA 134635 objectId:2825 +HGNC:3783 FNTAP1 farnesyltransferase, CAAX box, alpha pseudogene 1 pseudogene pseudogene Approved 11q14.2 11q14.2 FNTAL1 farnesyltransferase, CAAX box, alpha-like 1 1993-10-27 2010-10-13 2010-10-13 2014-11-18 283226 NG_005139 8276393 PGOHUM00000242832 +HGNC:3784 FNTAP2 farnesyltransferase, CAAX box, alpha pseudogene 2 pseudogene pseudogene Approved 13q12.11 13q12.11 FNTAL2 farnesyltransferase, CAAX box, alpha-like 2 1993-10-27 2010-10-13 2010-10-13 2014-11-19 2341 ENSG00000230022 OTTHUMG00000016545 NG_005138 8276393 +HGNC:3785 FNTB farnesyltransferase, CAAX box, beta protein-coding gene gene with protein product Approved 14q23.3 14q23.3 FPTB 1993-04-08 2015-08-25 2342 ENSG00000257365 OTTHUMG00000142811 uc001xia.4 NM_002028 CCDS9769 P49356 8276393 MGI:1861305 RGD:620119 FNTB 134636 objectId:2826 +HGNC:3786 FNTBL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-03-04 +HGNC:3787 FNZ entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:23377 FOCAD focadhesin protein-coding gene gene with protein product Approved 9p21.3 09p21.3 FLJ20375 KIAA1797 KIAA1797 2003-11-21 2012-03-23 2012-03-23 2016-10-05 54914 ENSG00000188352 OTTHUMG00000066930 uc003zog.2 AB058700 NM_017794 CCDS34993 Q5VW36 22427331 MGI:2676921 RGD:1311849 614606 +HGNC:49789 FOCAD-AS1 FOCAD antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p21.3 09p21.3 2014-02-14 2014-02-14 101929548 ENSG00000227071 OTTHUMG00000019649 "AI288976|AW363020" NR_121601 +HGNC:3788 FOLH1 folate hydrolase 1 protein-coding gene gene with protein product Approved 11p11.12 11p11.12 "PSM|PSMA|NAALAD1|NAALAdase|GCP2|GCPII" "glutamate carboxylase II|glutamate carboxypeptidase 2" FOLH folate hydrolase (prostate-specific membrane antigen) 1 1996-12-16 2016-06-21 2016-10-05 2346 ENSG00000086205 OTTHUMG00000166625 uc001ngy.3 M99487 NM_004476 "CCDS7946|CCDS31493|CCDS53626|CCDS53627|CCDS53628" Q04609 9838072 MGI:1858193 RGD:70963 FOLH1 600934 M28.010 objectId:1606 3.4.17.21 +HGNC:13636 FOLH1B folate hydrolase 1B other unknown Approved 11q14.3 11q14.3 PSMAL "prostate specific membrane antigen like protein|Cell growth-inhibiting gene 26 protein" "FOLH2|FOLHP" folate hydrolase 2 2009-04-21 2016-09-28 219595 ENSG00000134612 OTTHUMG00000167376 AF261715 NM_153696 Q9HBA9 "9838072|14716746" FOLH1B 609020 PGOHUM00000258599 objectId:1607 +HGNC:3791 FOLR1 folate receptor 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 folate receptor alpha FOLR folate receptor 1 (adult) 1991-08-08 2016-06-21 2016-06-21 2348 ENSG00000110195 OTTHUMG00000167876 uc001osa.3 J05013 NM_016725 CCDS8211 P15328 1717147 MGI:95568 RGD:71032 FOLR1 136430 220919 +HGNC:3792 FOLR1P1 folate receptor 1 pseudogene 1 pseudogene pseudogene Approved 11q13.4 11q13.4 FOLR1P "folate receptor 1 (adult) pseudogene|folate receptor 1 (adult) pseudogene 1" 1992-04-16 2010-03-12 2016-06-27 2016-06-27 390221 M86438 NG_005088 "1581364|1330883" PGOHUM00000242789 +HGNC:3793 FOLR2 folate receptor beta protein-coding gene gene with protein product Approved 11q13.4 11q13.4 folate receptor 2 (fetal) 1992-04-16 2016-04-26 2016-04-26 2350 ENSG00000165457 OTTHUMG00000150394 uc001ose.5 AK222539 NM_000803 CCDS8212 P14207 "1133088|7698003" MGI:95569 RGD:1308515 FOLR2 136425 +HGNC:3794 FOLR2L entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-04-09 +HGNC:3795 FOLR3 folate receptor 3 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 FR-G folate receptor gamma folate receptor 3 (gamma) 1997-09-05 2016-06-27 2016-06-27 2352 ENSG00000110203 OTTHUMG00000167870 uc031xur.2 U08471 NM_000804 CCDS73344 P41439 8110752 FOLR3 602469 +HGNC:38074 FOLR3P1 folate receptor 3 pseudogene 1 pseudogene pseudogene Approved 11q13.4 11q13.4 folate receptor 3 (gamma) pseudogene 1 2010-04-09 2016-06-27 2016-06-27 100288543 NG_022959 PGOHUM00000242790 +HGNC:26435 FOPNL FGFR1OP N-terminal like protein-coding gene gene with protein product Approved 16p13.11 16p13.11 "DKFZp686N1651|FLJ31153|PHSECRG2|FOR20" "pluripotent embryonic stem cell-related protein|FOP-related protein of 20 kDa" C16orf63 chromosome 16 open reading frame 63 2006-02-20 2011-03-18 2011-03-18 2015-12-18 123811 ENSG00000133393 OTTHUMG00000129923 uc002dec.2 AL832498 NM_144600 "CCDS10567|CCDS76829|CCDS76830|CCDS76831|CCDS76832|CCDS76833" Q96NB1 20551181 MGI:1913336 RGD:1305823 FOPNL 617149 +HGNC:3796 FOS Fos proto-oncogene, AP-1 transcription factor subunit protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "c-fos|AP-1" "v-fos FBJ murine osteosarcoma viral oncogene homolog|FBJ murine osteosarcoma viral oncogene homolog" "Basic leucine zipper proteins|Fos transcription factor family" "506|1256" 2001-06-22 2016-05-27 2016-05-27 2353 ENSG00000170345 OTTHUMG00000171774 uc001xrn.4 K00650 NM_005252 CCDS9841 P01100 "16123044|16055710|15926923" MGI:95574 RGD:2626 FOS 164810 364789 +HGNC:3797 FOSB FosB proto-oncogene, AP-1 transcription factor subunit protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "G0S3|GOSB|GOS3|AP-1|MGC42291|DKFZp686C0818" "oncogene FOS-B|activator protein 1" FBJ murine osteosarcoma viral oncogene homolog B "Basic leucine zipper proteins|Fos transcription factor family" "506|1256" 1992-09-18 2016-05-27 2016-10-05 2354 ENSG00000125740 OTTHUMG00000182122 uc002pbx.5 NM_006732 "CCDS12664|CCDS46113" P53539 1301997 MGI:95575 RGD:1308198 FOSB 164772 +HGNC:13718 FOSL1 FOS like 1, AP-1 transcription factor subunit protein-coding gene gene with protein product Approved 11q13.1 11q13.1 fra-1 FOS like antigen 1 "Basic leucine zipper proteins|Fos transcription factor family" "506|1256" 2000-12-04 2016-05-27 2016-10-05 8061 ENSG00000175592 OTTHUMG00000166715 uc001ogg.2 BC016648 NM_005438 "CCDS8121|CCDS73324|CCDS76436|CCDS76437" P15407 2107490 MGI:107179 RGD:2627 FOSL1 136515 +HGNC:44055 FOSL1P1 FOS like 1, AP-1 transcription factor subunit pseudogene 1 pseudogene pseudogene Approved 4q28.2 04q28.2 FOS like antigen 1 pseudogene 1 2012-05-30 2016-05-27 2016-05-27 100419062 ENSG00000248394 OTTHUMG00000161163 NG_025252 PGOHUM00000246070 +HGNC:3798 FOSL2 FOS like 2, AP-1 transcription factor subunit protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "FRA2|FLJ23306" FOS like antigen 2 "Basic leucine zipper proteins|Fos transcription factor family" "506|1256" 1996-10-02 2016-05-27 2016-10-05 2355 ENSG00000075426 OTTHUMG00000097832 uc002rma.4 NM_005253 CCDS1766 P15408 MGI:102858 RGD:2628 FOSL2 601575 +HGNC:13289 FOX# entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:5021 FOXA1 forkhead box A1 protein-coding gene gene with protein product Approved 14q21.1 14q21.1 HNF3A hepatocyte nuclear factor 3, alpha Forkhead boxes 508 1998-02-11 2002-09-20 2015-02-02 3169 ENSG00000129514 OTTHUMG00000140253 uc001wuf.5 U39840 XM_017021246 CCDS9665 P55317 "9119385|8652662" MGI:1347472 RGD:2807 FOXA1 602294 +HGNC:5022 FOXA2 forkhead box A2 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 HNF3B hepatocyte nuclear factor 3, beta Forkhead boxes 508 1998-02-11 2002-09-20 2016-10-05 3170 ENSG00000125798 OTTHUMG00000191876 uc002wsn.4 AF147787 NM_153675 "CCDS13147|CCDS46585" Q9Y261 "9119385|11875061" MGI:1347476 RGD:2808 FOXA2 600288 +HGNC:5023 FOXA3 forkhead box A3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 HNF3G hepatocyte nuclear factor 3, gamma Forkhead boxes 508 1998-02-11 2002-09-20 2014-11-19 3171 ENSG00000170608 OTTHUMG00000182484 uc002pdr.3 L12141 NM_004497 CCDS12677 P55318 9119385 MGI:1347477 RGD:2809 FOXA3 602295 +HGNC:3799 FOXB1 forkhead box B1 protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "HFKH-5|FKH5" Forkhead boxes 508 1999-12-22 2015-08-25 27023 ENSG00000171956 OTTHUMG00000172011 uc002agj.2 AF055080 NM_012182 CCDS32255 Q99853 MGI:1927549 RGD:1305217 FOXB1 +HGNC:23315 FOXB2 forkhead box B2 protein-coding gene gene with protein product Approved 9q21.2 09q21.2 bA159H20.4 Forkhead boxes 508 2006-07-04 2014-11-19 442425 ENSG00000204612 OTTHUMG00000020051 uc004ako.1 NM_001013735 CCDS35045 Q5VYV0 MGI:1347468 RGD:1585019 FOXB2 +HGNC:3800 FOXC1 forkhead box C1 protein-coding gene gene with protein product Approved 6p25.3 06p25.3 "FREAC3|ARA|IGDA|IHG1" "FKHL7|IRID1" Forkhead boxes 508 1995-06-05 2016-10-05 2296 ENSG00000054598 OTTHUMG00000016182 uc003mtp.4 AF048693 NM_001453 CCDS4473 Q12948 "7957066|9620769" MGI:1347466 RGD:1589718 FOXC1 601090 121883 +HGNC:3801 FOXC2 forkhead box C2 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 MFH-1 mesenchyme forkhead 1 FKHL14 forkhead box C2 (MFH-1, mesenchyme forkhead 1) Forkhead boxes 508 1997-02-14 2014-12-17 2014-12-17 2303 ENSG00000176692 OTTHUMG00000137652 uc002fjq.4 Y08223 NM_005251 CCDS10958 Q99958 "9169153|8674414" MGI:1347481 RGD:621703 FOXC2 602402 121891 +HGNC:50665 FOXC2-AS1 FOXC2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16q24.1 16q24.1 ODRUL osteosarcoma doxorubicin-resistance related upregulated lncRNA 2014-06-05 2015-09-30 103752587 ENSG00000260944 OTTHUMG00000176481 AW271272 NR_125795 26408180 +HGNC:50650 FOXCUT FOXC1 upstream transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p25.3 06p25.3 TCONS_00011636 FOXC1 promoter upstream transcript LINC01379 long intergenic non-protein coding RNA 1379 Long non-coding RNAs 788 2014-06-01 2014-06-09 2014-06-09 2015-01-23 101927703 ENSG00000280916 OTTHUMG00000189532 AW002296 NR_125804 "24889262|25031703" 615976 +HGNC:3802 FOXD1 forkhead box D1 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 FREAC4 FKHL8 Forkhead boxes 508 1995-06-05 2015-09-07 2297 ENSG00000251493 OTTHUMG00000162495 uc032uyj.2 U59831 NM_004472 CCDS75259 Q16676 "7957066|8825632" MGI:1347463 RGD:621712 FOXD1 601091 +HGNC:50658 FOXD1-AS1 FOXD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q13.2 05q13.2 TCONS_00009423 2014-06-04 2014-06-04 106144539 ENSG00000247993 OTTHUMG00000160932 AA769738 +HGNC:3803 FOXD2 forkhead box D2 protein-coding gene gene with protein product Approved 1p33 01p33 FREAC9 FKHL17 Forkhead boxes 508 1997-08-18 2016-10-05 2306 ENSG00000186564 OTTHUMG00000007950 uc001crm.3 AF042832 NM_004474 CCDS30708 O60548 "9403061|12621056" MGI:1347471 RGD:1304642 FOXD2 602211 +HGNC:44256 FOXD2-AS1 FOXD2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 1p33 01p33 MGC12982 "FOXD2 antisense RNA 1 (non-protein coding)|FOXD2 antisense RNA 1" 2012-07-25 2012-10-17 2012-10-17 84793 ENSG00000237424 OTTHUMG00000007949 uc001crl.4 BC006113 NR_026878 +HGNC:3804 FOXD3 forkhead box D3 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "Genesis|HFH2" Forkhead boxes 508 1999-12-22 2015-08-25 27022 ENSG00000187140 OTTHUMG00000009141 uc001dax.3 AF197560 NM_012183 CCDS624 Q9UJU5 8499623 MGI:1347473 RGD:621715 FOXD3 611539 265161 +HGNC:40241 FOXD3-AS1 FOXD3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 1p31.3 01p31.3 pasFOXD3 FOXD3 promoter-associated antisense long non-coding RNA 2014-06-04 2014-11-19 100996301 ENSG00000230798 OTTHUMG00000009138 KJ493778 NR_121634 +HGNC:3805 FOXD4 forkhead box D4 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 "FREAC5|FOXD4a" FKHL9 Forkhead boxes 508 1995-06-05 2016-10-12 2298 ENSG00000170122 OTTHUMG00000021015 uc003zfz.5 U13223 NM_207305 CCDS34975 Q12950 "7957066|8825632|12234674" MGI:1347467 RGD:621716 LRG_452|http://www.lrg-sequence.org/LRG/LRG_452 FOXD4 601092 +HGNC:18521 FOXD4L1 forkhead box D4-like 1 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 FOXD5 2003-11-26 2015-09-09 200350 ENSG00000184492 OTTHUMG00000131359 uc002tjw.5 AF452723 NM_012184 CCDS2117 Q9NU39 "12421752|15233989" FOXD4L1 611084 +HGNC:18523 FOXD4L3 forkhead box D4-like 3 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 "OTTHUMG00000019959|FOXD6" 2003-11-26 2016-10-05 286380 ENSG00000187559 OTTHUMG00000019959 uc004agm.2 AY344642 NM_199358 CCDS43833 Q6VB84 12421752 FOXD4L3 611086 +HGNC:23762 FOXD4L4 forkhead box D4-like 4 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 "bA460E7.2|OTTHUMG00000013337|OTTHUMG00000066752" FOXD4L2 forkhead box D4-like 2 2005-04-01 2016-10-05 349334 ENSG00000184659 OTTHUMG00000013337 uc004afx.2 NM_199244 CCDS75845 Q8WXT5 FOXD4L4 611085 +HGNC:18522 FOXD4L5 forkhead box D4-like 5 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 "bA15J10.2|OTTHUMG00000013332" 2007-03-20 2016-10-05 653427 ENSG00000204779 OTTHUMG00000013332 uc010moc.3 NM_001126334 CCDS47977 Q5VV16 12234674 FOXD4L5 +HGNC:31986 FOXD4L6 forkhead box D4-like 6 protein-coding gene gene with protein product Approved 9p11.2 09p11.2 OTTHUMG00000066822 2007-03-19 2015-09-09 653404 ENSG00000273514 OTTHUMG00000188618 uc004afi.3 NM_001085476 CCDS43826 Q3SYB3 FOXD4L6 +HGNC:3806 FOXE1 forkhead box E1 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "TTF-2|HFKH4" thyroid transcription factor 2 "FKHL15|TITF2|FOXE2" "forkhead box E2|forkhead box E1 (thyroid transcription factor 2)" Forkhead boxes 508 1997-02-14 2014-12-17 2016-10-05 2304 ENSG00000178919 OTTHUMG00000020333 uc004axu.4 U89995 NM_004473 CCDS35078 O00358 "9169137|9697705" MGI:1353500 RGD:621723 FOXE1 602617 121895 +HGNC:3808 FOXE3 forkhead box E3 protein-coding gene gene with protein product Approved 1p33 01p33 FREAC8 FKHL12 Forkhead boxes 508 1995-06-05 2016-10-05 2301 ENSG00000186790 OTTHUMG00000007954 uc001crk.3 AF275722 NM_012186 CCDS550 Q13461 8825632 MGI:1353569 RGD:621727 FOXE3 601094 121900 +HGNC:3809 FOXF1 forkhead box F1 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 FREAC1 FKHL5 Forkhead boxes 508 1995-06-05 2016-10-05 2294 ENSG00000103241 OTTHUMG00000137651 uc002fjl.4 U13219 NM_001451 CCDS10957 Q12946 "8825632|7957066" MGI:1347470 RGD:1584229 FOXF1 601089 212909 +HGNC:3810 FOXF2 forkhead box F2 protein-coding gene gene with protein product Approved 6p25.3 06p25.3 FREAC2 FKHL6 Forkhead boxes 508 1995-06-05 2015-08-25 2295 ENSG00000137273 OTTHUMG00000016243 uc003mtm.3 U13220 NM_001452 CCDS4472 Q12947 "9799607|7957066" MGI:1347479 FOXF2 603250 +HGNC:3811 FOXG1 forkhead box G1 protein-coding gene gene with protein product Approved 14q12 14q12 "HFK2|QIN|BF1|HFK1|HFK3|HBF-3" "FKHL2|FOXG1B|FKHL4|FKH2|FKHL1|FOXG1C|FKHL3|FOXG1A" "forkhead box G1B|forkhead box G1C|forkhead box G1A" Forkhead boxes 508 1994-12-07 2007-05-16 2007-05-16 2015-09-11 2290 ENSG00000176165 OTTHUMG00000140187 uc001wqe.5 NM_005249 CCDS9636 P55316 "7959731|17260156" MGI:1347464 RGD:2619 FOXG1 164874 167854 +HGNC:50663 FOXG1-AS1 FOXG1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 14q12 14q12 FOXG1-AS FOXG1 antisense RNA 1 2014-06-04 2014-06-04 2014-09-19 103695363 ENSG00000257126 OTTHUMG00000170343 DA239559 NR_125758 24007600 +HGNC:3814 FOXH1 forkhead box H1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FAST1 Forkhead boxes 508 1999-12-22 2015-08-25 8928 ENSG00000160973 OTTHUMG00000165172 uc003zdc.4 AF076292 NM_003923 CCDS6428 O75593 9702198 MGI:1347465 RGD:1311275 FOXH1 603621 159600 +HGNC:3815 FOXI1 forkhead box I1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 FREAC6 FKHL10 Forkhead boxes 508 1995-06-05 2016-10-05 2299 ENSG00000168269 OTTHUMG00000130436 uc003mai.5 BC029778 "NM_144769|NM_012188" "CCDS4372|CCDS47337" Q12951 "7957066|8825632" MGI:1096329 RGD:1307421 FOXI1 601093 231422 +HGNC:32448 FOXI2 forkhead box I2 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 FLJ46831 Forkhead boxes 508 2007-05-02 2014-11-19 399823 ENSG00000186766 OTTHUMG00000019250 uc009yas.3 AK128865 NM_207426 CCDS7655 Q6ZQN5 MGI:3028075 RGD:621739 FOXI2 +HGNC:35123 FOXI3 forkhead box I3 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 2008-12-18 2015-09-07 344167 ENSG00000214336 OTTHUMG00000155048 uc032nud.2 "BN001221|BN001222" NM_001135649 CCDS77433 A8MTJ6 18787161 MGI:3511278 RGD:1561816 FOXI3 612351 +HGNC:3816 FOXJ1 forkhead box J1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "HFH-4|HFH4" FKHL13 Forkhead boxes 508 1996-11-13 2015-08-25 2302 ENSG00000129654 OTTHUMG00000180120 uc002jqx.4 X99349 NM_001454 CCDS32739 Q92949 "9073514|16518568" MGI:1347474 RGD:621764 FOXJ1 602291 +HGNC:24818 FOXJ2 forkhead box J2 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 FHX Forkhead boxes 508 2004-03-23 2006-12-15 55810 ENSG00000065970 OTTHUMG00000168526 uc001qtu.4 AF155132 NM_018416 CCDS8587 Q9P0K8 "10777590|10966786" MGI:1926805 RGD:1565101 FOXJ2 +HGNC:29178 FOXJ3 forkhead box J3 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 KIAA1041 Forkhead boxes 508 2004-03-22 2014-11-18 22887 ENSG00000198815 OTTHUMG00000007026 uc001chg.3 AB028964 NM_014947 "CCDS30689|CCDS55594" Q9UPW0 MGI:2443432 RGD:1311770 FOXJ3 616035 +HGNC:23480 FOXK1 forkhead box K1 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 IMAGE:5164497 Forkhead boxes 508 2004-03-09 2016-10-05 221937 ENSG00000164916 OTTHUMG00000151739 uc003snc.2 BK004104 XM_011515191 CCDS34591 P85037 15202027 MGI:1347488 RGD:1309643 FOXK1 616302 +HGNC:6036 FOXK2 forkhead box K2 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "ILF|ILF1" interleukin enhancer binding factor 1 Forkhead boxes 508 1992-02-13 2004-03-10 2004-03-09 2016-10-05 3607 ENSG00000141568 OTTHUMG00000140374 uc002kfn.4 U58196 NM_181430 CCDS11813 Q01167 3260003 MGI:1916087 RGD:1305408 FOXK2 147685 +HGNC:3817 FOXL1 forkhead box L1 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 "FREAC7|FKH6" FKHL11 Forkhead boxes 508 1995-06-05 2016-10-05 2300 ENSG00000176678 OTTHUMG00000137653 uc002fjr.4 AF315075 NM_005250 CCDS10959 Q12952 7957066 MGI:1347469 RGD:1584212 FOXL1 603252 +HGNC:1092 FOXL2 forkhead box L2 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 BPES1 BPES Forkhead boxes 508 1992-02-28 2016-10-05 668 ENSG00000183770 OTTHUMG00000159889 uc003esw.3 AF301906 NM_023067 CCDS3105 P58012 1941972 MGI:1349428 RGD:1310041 LOVD - Center for Medical Genetics, Ghent, Belgium|http://medgen.ugent.be/LOVD2/home.php?select_db=FOXL2 FOXL2 605597 121904 +HGNC:34428 FOXL2NB FOXL2 neighbor protein-coding gene gene with protein product Approved 3q22.3 03q22.3 FLJ43329 C3orf72 chromosome 3 open reading frame 72 2008-07-11 2014-05-22 2014-05-22 2014-11-19 401089 ENSG00000206262 OTTHUMG00000159886 AK125319 NM_001040061 CCDS43155 Q6ZUU3 +HGNC:3818 FOXM1 forkhead box M1 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "HFH-11|trident|HNF-3|INS-1|MPP2|MPHOSPH2|TGT3" M-phase phosphoprotein 2 FKHL16 Forkhead boxes 508 1997-07-25 2016-10-05 2305 ENSG00000111206 OTTHUMG00000168118 uc001qlf.4 Y12773 NM_021953 "CCDS8515|CCDS8516|CCDS8517|CCDS76506" Q08050 "9032290|9441747" MGI:1347487 RGD:61807 FOXM1 602341 +HGNC:12765 FOXN1 forkhead box N1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 FKHL20 "WHN|RONU" "winged-helix nude|Rowett nude" Forkhead boxes 508 1998-10-07 2003-06-13 2003-06-12 2016-10-12 8456 ENSG00000109101 OTTHUMG00000132603 uc010crm.4 Y11739 XM_017025228 CCDS11232 O15353 9321431 MGI:102949 RGD:3970 "FOXN1base: Mutation registry for T-cell immunodeficiency, congenital alopecia, and nail dystrophy (Previously known as WHNbase)|http://structure.bmc.lu.se/idbase/FOXN1base/|LRG_61|http://www.lrg-sequence.org/LRG/LRG_61" FOXN1 600838 183879 +HGNC:5281 FOXN2 forkhead box N2 protein-coding gene gene with protein product Approved 2p16.3 02p16.3 HTLF human T-cell leukemia virus enhancer factor Forkhead boxes 508 1992-02-13 2006-10-02 2006-10-02 2016-10-05 3344 ENSG00000170802 OTTHUMG00000129168 uc002rwh.2 NM_002158 CCDS1838 P32314 1639393 MGI:1347478 RGD:1562291 FOXN2 143089 +HGNC:1928 FOXN3 forkhead box N3 protein-coding gene gene with protein product Approved 14q31.3-q32.11 14q31.3-q32.11 "C14orf116|CHES1" "chromosome 14 open reading frame 116|checkpoint suppressor 1" Forkhead boxes 508 1997-10-16 2007-05-02 2007-05-02 2016-10-11 1112 ENSG00000053254 OTTHUMG00000170898 uc010atk.4 NM_005197 "CCDS32138|CCDS41977" O00409 9154802 MGI:1918625 RGD:1305711 FOXN3 602628 +HGNC:44290 FOXN3-AS1 FOXN3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q32.11 14q32.11 FOXN3 antisense RNA 1 (non-protein coding) 2012-08-08 2012-08-15 2012-10-12 400236 ENSG00000258920 OTTHUMG00000170973 uc001xxq.3 BC067103 NR_036500 +HGNC:30119 FOXN3-AS2 FOXN3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 14q32.11 14q32.11 PRO1768 FOXN3 antisense RNA 2 (non-protein coding) 2012-08-08 2012-08-15 2012-10-12 29018 ENSG00000259073 OTTHUMG00000170974 uc001xxr.4 NR_024620 +HGNC:43882 FOXN3P1 forkhead box N3 pseudogene 1 pseudogene pseudogene Approved Xq22.1 Xq22.1 2012-04-17 2012-04-17 643976 ENSG00000176318 OTTHUMG00000022055 NG_022627 PGOHUM00000241477 +HGNC:21399 FOXN4 forkhead box N4 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 Forkhead boxes 508 2003-07-07 2016-10-05 121643 ENSG00000139445 OTTHUMG00000152868 uc001toe.5 AF425596 XM_062735 CCDS9126 Q96NZ1 MGI:2151057 RGD:1306389 FOXN4 609429 +HGNC:3819 FOXO1 forkhead box O1 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 FKH1 "FKHR|FOXO1A" forkhead homolog in rhabdomyosarcoma Forkhead boxes 508 1994-01-07 2007-05-02 2007-05-02 2016-10-05 2308 ENSG00000150907 OTTHUMG00000016775 uc001uxl.5 NM_002015 CCDS9371 Q12778 "8275086|15057823" MGI:1890077 RGD:620283 FOXO1 136533 121908 +HGNC:3820 FOXO1B forkhead box O1B pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 FKHRP1 "forkhead (Drosophila) homolog (rhabdomyosarcoma) pseudogene 1|forkhead box O1B" 1998-03-23 2007-05-02 2011-05-04 2311 ENSG00000214295 OTTHUMG00000162117 AF032888 NG_001120 9479491 PGOHUM00000235489 +HGNC:3821 FOXO3 forkhead box O3 protein-coding gene gene with protein product Approved 6q21 06q21 "AF6q21|FOXO2" "FKHRL1|FOXO3A" Forkhead boxes 508 1998-03-23 2007-05-02 2007-05-02 2015-08-25 2309 ENSG00000118689 OTTHUMG00000015327 uc003psk.3 AF032886 XM_017010585 CCDS5068 O43524 9479491 MGI:1890081 RGD:1309196 FOXO3 602681 +HGNC:3822 FOXO3B forkhead box O3B pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 FKHRL1P1 forkhead (Drosophila) homolog (rhabdomyosarcoma) like 1 pseudogene 1 1998-03-23 2009-02-03 2009-02-03 2014-11-18 2310 ENSG00000240445 OTTHUMG00000059047 NR_026718 9479491 PGOHUM00000236954 +HGNC:7139 FOXO4 forkhead box O4 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 AFX1 MLLT7 "myeloid/lymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog); translocated to, 7|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 7" Forkhead boxes 508 1994-12-14 2007-05-02 2007-05-02 2014-11-18 4303 ENSG00000184481 OTTHUMG00000021789 uc004dys.3 NM_005938 "CCDS43969|CCDS55440" P98177 7529552 MGI:1891915 RGD:1561201 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FOXO4 FOXO4 300033 +HGNC:24814 FOXO6 forkhead box O6 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 Forkhead boxes 508 2008-04-10 2009-07-23 2014-11-18 100132074 ENSG00000204060 OTTHUMG00000005713 uc057fid.1 XM_002342102 A8MYZ6 12857750 MGI:2676586 RGD:1595858 FOXO6 611457 +HGNC:3823 FOXP1 forkhead box P1 protein-coding gene gene with protein product Approved 3p13 03p13 "QRF1|12CC4|HSPC215|hFKH1B" "fork head-related protein like B|glutamine-rich factor 1|PAX5/FOXP1 fusion protein" Forkhead boxes 508 2000-01-07 2016-06-10 27086 ENSG00000114861 OTTHUMG00000158803 uc003dop.4 AF146696 NM_032682 "CCDS2914|CCDS33785|CCDS58837|CCDS58838|CCDS58839|CCDS74963|CCDS74964" Q9H334 "8265594|11751404" MGI:1914004 RGD:1308669 FOXP1 605515 201171 +HGNC:41942 FOXP1-AS1 FOXP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p13 03p13 FOXP1 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2016-06-10 104502416 ENSG00000244203 OTTHUMG00000158800 uc003dot.4 NR_126463 +HGNC:41335 FOXP1-IT1 FOXP1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3p13 03p13 FOXP1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100506815 ENSG00000242094 OTTHUMG00000158796 uc003dou.4 +HGNC:13875 FOXP2 forkhead box P2 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 CAGH44 "trinucleotide repeat containing 10|forkhead/winged-helix transcription factor|speech and language disorder 1|CAG repeat protein 44" "TNRC10|SPCH1" "Forkhead boxes|Trinucleotide repeat containing" "508|775" 2000-11-20 2016-10-05 93986 ENSG00000128573 OTTHUMG00000023131 uc064hfd.1 U80741 NM_014491 "CCDS43635|CCDS55154|CCDS5760|CCDS5761" O15409 "11586359|9225980" MGI:2148705 RGD:1559697 FOXP2 605317 212885 +HGNC:6106 FOXP3 forkhead box P3 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "JM2|XPID|AIID|PIDX|DIETER|SCURFIN" IPEX immune dysregulation, polyendocrinopathy, enteropathy, X-linked Forkhead boxes 508 2000-05-05 2002-09-20 2016-10-12 50943 ENSG00000049768 OTTHUMG00000024135 uc004dnf.4 NM_014009 "CCDS14323|CCDS48109" Q9BZS1 "10677306|11138001" MGI:1891436 RGD:1562112 "FOXP3base: Mutation registry for Immunodysregulation, polyendocrinopathy, and enteropathy, X-linked; IPEX|http://structure.bmc.lu.se/idbase/FOXP3base/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FOXP3|LRG_62|http://www.lrg-sequence.org/LRG/LRG_62" FOXP3 300292 121913 +HGNC:20842 FOXP4 forkhead box P4 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 FLJ40908 Forkhead boxes 508 2003-05-28 2015-09-11 116113 ENSG00000137166 OTTHUMG00000014679 uc063okl.1 AB080747 NM_138457 "CCDS4856|CCDS34447|CCDS34448" Q8IVH2 MGI:1921373 RGD:1311386 FOXP4 608924 +HGNC:50332 FOXP4-AS1 FOXP4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.1 06p21.1 2014-04-15 2014-04-15 101060264 ENSG00000234753 OTTHUMG00000014680 NR_126417 +HGNC:20951 FOXQ1 forkhead box Q1 protein-coding gene gene with protein product Approved 6p25.3 06p25.3 HFH1 Forkhead boxes 508 2003-04-24 2016-10-05 94234 ENSG00000164379 OTTHUMG00000016160 uc003mtl.5 AF153341 NM_033260 CCDS4471 Q9C009 "11747606|12011061" MGI:1298228 RGD:621572 FOXQ1 612788 +HGNC:29980 FOXR1 forkhead box R1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "DLNB13|FOXN5" Forkhead boxes 508 2004-05-18 2015-09-07 283150 ENSG00000176302 OTTHUMG00000166347 uc001pui.4 AB094092 NM_181721 CCDS31688 Q6PIV2 15067358 MGI:2685961 RGD:1309739 FOXR1 615755 +HGNC:30469 FOXR2 forkhead box R2 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "MGC21658|FOXN6" Forkhead boxes 508 2004-06-18 2016-10-05 139628 ENSG00000189299 OTTHUMG00000021661 uc004duo.4 BC012934 NM_198451 CCDS35308 Q6PJQ5 "15202009|15202027" MGI:3511682 RGD:1564437 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FOXR2 FOXR2 300949 +HGNC:26927 FOXRED1 FAD dependent oxidoreductase domain containing 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 H17 Mitochondrial respiratory chain complex assembly factors 645 2006-02-03 2016-06-08 2016-06-08 55572 ENSG00000110074 OTTHUMG00000165827 uc001qdi.4 NM_017547 CCDS8471 Q96CU9 10497265 MGI:2446262 RGD:1311785 FOXRED1 613622 244375 +HGNC:26264 FOXRED2 FAD dependent oxidoreductase domain containing 2 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "FLJ23322|ERFAD" ER flavoprotein associated with degradation FAD-dependent oxidoreductase domain containing 2 2006-07-05 2016-02-02 2016-02-02 80020 ENSG00000100350 OTTHUMG00000044614 uc003app.5 BC027716 NM_024955 CCDS13929 Q8IWF2 12477932 MGI:106315 RGD:1306763 FOXRED2 613777 +HGNC:3735 FOXS1 forkhead box S1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 FREAC10 FKHL18 "forkhead (Drosophila)-like 18|forkhead-like 18 (Drosophila)" Forkhead boxes 508 1997-08-18 2008-04-10 2008-04-10 2015-08-25 2307 ENSG00000179772 OTTHUMG00000032183 uc002wwt.2 AF042831 NM_004118 CCDS13192 O43638 "9325056|17062144" MGI:95546 RGD:1310679 FOXS1 602939 +HGNC:3824 FPGS folylpolyglutamate synthase protein-coding gene gene with protein product Approved 9q34.11 09q34.11 2001-06-22 2015-08-25 2356 ENSG00000136877 OTTHUMG00000020716 uc004bsg.3 XM_005251864 "CCDS35148|CCDS35149|CCDS75905" Q05932 MGI:95576 RGD:1587713 FPGS 136510 6.3.2.17 +HGNC:3825 FPGT fucose-1-phosphate guanylyltransferase protein-coding gene gene with protein product Approved 1p31.1 01p31.1 GFPP 1998-12-02 2016-04-25 8790 ENSG00000254685 OTTHUMG00000009571 uc001dgb.4 AF017445 NM_003838 CCDS663 O14772 9804772 MGI:1922790 RGD:735121 FPGT 603609 2.7.7.30 +HGNC:42952 FPGT-TNNI3K FPGT-TNNI3K readthrough other readthrough Approved 1p31.1 01p31.1 Ankyrin repeat domain containing 403 2011-09-23 2016-10-05 100526835 ENSG00000259030 OTTHUMG00000166281 uc001dge.4 NM_001112808 +HGNC:3826 FPR1 formyl peptide receptor 1 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "FPR|FMLP" Formyl peptide receptors 198 1991-06-05 2016-10-12 2357 ENSG00000171051 OTTHUMG00000183500 uc002pxq.4 M60627 NM_002029 CCDS12839 P21462 "2161213|12595898" MGI:107443 RGD:1310883 LRG_146|http://www.lrg-sequence.org/LRG/LRG_146 FPR1 136537 457447 objectId:222 +HGNC:3827 FPR2 formyl peptide receptor 2 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "LXA4R|HM63|FPRH2|FMLPX|FPR2A|FMLP-R-II|ALXR" FPRL1 formyl peptide receptor-like 1 "Formyl peptide receptors|Leukotriene receptors" "198|204" 1991-06-05 2008-04-17 2008-04-17 2016-01-15 2358 ENSG00000171049 OTTHUMG00000183501 uc061byv.1 M88107 NM_001005738 CCDS12840 P25090 9054386 MGI:1278319 RGD:1584013 FPR2 136538 objectId:223 +HGNC:3828 FPR3 formyl peptide receptor 3 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "FPRH1|FMLPY|RMLP-R-I" FPRL2 formyl peptide receptor-like 2 Formyl peptide receptors 198 1991-12-04 2008-04-17 2008-04-17 2016-01-15 2359 ENSG00000187474 OTTHUMG00000183502 uc002pxt.2 NM_002030 CCDS12841 P25089 "1612600|8198572" MGI:1194495 RGD:1566044 FPR3 136539 objectId:224 +HGNC:3868 FRA1A fragile site, aphidicolin type, common, fra(1)(p36) other fragile site Approved 1p36 01p36 2001-06-22 2012-10-02 2360 +HGNC:3869 FRA1B fragile site, aphidicolin type, common, fra(1)(p32) other fragile site Approved 1p32 01p32 2001-06-22 2012-10-02 2361 +HGNC:3870 FRA1C fragile site, aphidicolin type, common, fra(1)(p31.2) other fragile site Approved 1p31.2 01p31.2 2001-06-22 2012-10-02 2362 +HGNC:3871 FRA1D fragile site, aphidicolin type, common, fra(1)(p22) other fragile site Approved 1p22 01p22 2001-06-22 2012-10-02 2363 +HGNC:3872 FRA1E fragile site, aphidicolin type, common, fra(1)(p21.2) other fragile site Approved 1p21.2 01p21.2 2001-06-22 2012-10-02 2364 16556484 +HGNC:3873 FRA1F fragile site, aphidicolin type, common, fra(1)(q21) other fragile site Approved 1q21 01q21 2001-06-22 2012-10-02 2365 +HGNC:3874 FRA1G fragile site, aphidicolin type, common, fra(1)(q25.1) other fragile site Approved 1q25.1 01q25.1 2001-06-22 2012-10-02 2366 +HGNC:3875 FRA1H fragile site, 5-azacytidine type, common, fra(1)(q42) other fragile site Approved 1q42.1 01q42.1 2001-06-22 2012-10-02 2367 9763679 +HGNC:3876 FRA1I fragile site, aphidicolin type, common, fra(1)(q44) other fragile site Approved 1q44 01q44 2001-06-22 2012-10-02 2368 +HGNC:3877 FRA1J fragile site, 5-azacytidine type, common, fra(1)(q12) other fragile site Approved 1q12 01q12 2001-06-22 2012-10-02 2369 +HGNC:3878 FRA1K fragile site, aphidicolin type, common, fra(1)(q31) other fragile site Approved 1q31 01q31 1988-08-31 2003-10-09 2370 +HGNC:3879 FRA1L fragile site, aphidicolin type, common, fra(1)(p31) other fragile site Approved 1p31 01p31 1989-06-30 2003-10-09 2371 +HGNC:3880 FRA1M fragile site, folic acid type, rare, fra(1)(p21.3) other fragile site Approved 1p21.3 01p21.3 1992-08-24 2003-10-09 2372 1865478 +HGNC:3885 FRA2A fragile site, folic acid type, rare, fra(2)(q11.2) other fragile site Approved 2q11.2 02q11.2 2001-06-22 2012-10-02 2373 +HGNC:3886 FRA2B fragile site, folic acid type, rare, fra(2)(q13) other fragile site Approved 2q13 02q13 2001-06-22 2012-10-02 2374 +HGNC:3887 FRA2C fragile site, aphidicolin type, common, fra(2)(p24.2) other fragile site Approved 2p24.2 02p24.2 2001-06-22 2012-10-02 2375 +HGNC:3888 FRA2D fragile site, aphidicolin type, common, fra(2)(p16.2) other fragile site Approved 2p16.2 02p16.2 2001-06-22 2012-10-02 2376 +HGNC:3889 FRA2E fragile site, aphidicolin type, common, fra(2)(p13) other fragile site Approved 2p13 02p13 2001-06-22 2012-10-02 2377 +HGNC:3890 FRA2F fragile site, aphidicolin type, common, fra(2)(q21.3) other fragile site Approved 2q21.3 02q21.3 2001-06-22 2012-10-02 2378 +HGNC:3891 FRA2G fragile site, aphidicolin type, common, fra(2)(q31) other fragile site Approved 2q31 02q31 2001-06-22 2012-10-02 2379 +HGNC:3892 FRA2H fragile site, aphidicolin type, common, fra(2)(q32.1) other fragile site Approved 2q32.1 02q32.1 2001-06-22 2012-10-02 2380 +HGNC:3893 FRA2I fragile site, aphidicolin type, common, fra(2)(q33) other fragile site Approved 2q33 02q33 2001-06-22 2012-10-02 2381 +HGNC:3894 FRA2J fragile site, aphidicolin type, common, fra(2)(q37.3) other fragile site Approved 2q37.3 02q37.3 2001-06-22 2012-10-02 2382 +HGNC:3895 FRA2K fragile site, folic acid type, rare, fra(2)(q22.3) other fragile site Approved 2q22.3 02q22.3 2001-06-22 2012-10-02 2383 +HGNC:3896 FRA3A fragile site, aphidicolin type, common, fra(3)(p24.2) other fragile site Approved 3p24.2 03p24.2 2001-06-22 2012-10-02 2384 +HGNC:3897 FRA3B fragile site, aphidicolin type, common, fra(3)(p14.2) other fragile site Approved 3p14.2 03p14.2 1986-01-01 2003-10-09 3864602 +HGNC:3898 FRA3C fragile site, aphidicolin type, common, fra(3)(q27) other fragile site Approved 3q27 03q27 2001-06-22 2012-10-02 2386 +HGNC:3899 FRA3D fragile site, aphidicolin type, common, fra(3)(q25) other fragile site Approved 3q25 03q25 1989-06-01 2003-10-09 2387 +HGNC:3900 FRA4A fragile site, aphidicolin type, common, fra(4)(p16.1) other fragile site Approved 4p16.1 04p16.1 2001-06-22 2012-10-02 2388 +HGNC:3901 FRA4B fragile site, BrdU type, common, fra(4)(q12) other fragile site Approved 4q12 04q12 2001-06-22 2012-10-02 2389 +HGNC:3902 FRA4C fragile site, aphidicolin type, common, fra(4)(q31.1) other fragile site Approved 4q31.1 04q31.1 2001-06-22 2012-10-02 2390 +HGNC:3903 FRA4D fragile site, aphidicolin type, common, fra(4)(p15) other fragile site Approved 4p15 04p15 2001-06-22 2012-10-02 2391 +HGNC:3904 FRA4E entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:3905 FRA5A fragile site, BrdU type, common, fra(5)(p13) other fragile site Approved 5p13 05p13 2001-06-22 2012-10-02 2393 +HGNC:3906 FRA5B fragile site, BrdU type, common, fra(5)(q15) other fragile site Approved 5q15 05q15 2001-06-22 2012-10-02 2394 +HGNC:3907 FRA5C fragile site, aphidicolin type, common, fra(5)(q31.1) other fragile site Approved 5q31.1 05q31.1 2001-06-22 2012-10-02 2396 +HGNC:3908 FRA5D fragile site, aphidicolin type, common, fra(5)(q15) other fragile site Approved 5q15 05q15 2001-06-22 2012-10-02 2397 +HGNC:3909 FRA5E fragile site, aphidicolin type, common, fra(5)(p14) other fragile site Approved 5p14 05p14 1988-08-31 2005-03-17 2398 +HGNC:3910 FRA5F fragile site, aphidicolin type, common, fra(5)(q21) other fragile site Approved 5q21 05q21 1988-08-31 2005-03-17 2399 +HGNC:3911 FRA5G fragile site, folic acid type, rare, fra(5)(q35) other fragile site Approved 5q35 05q35 1992-08-24 2005-03-17 2400 2213847 +HGNC:3912 FRA6A fragile site, folic acid type, rare, fra(6)(p23) other fragile site Approved 6p23 06p23 2001-06-22 2012-10-02 2401 +HGNC:3913 FRA6B fragile site, aphidicolin type, common, fra(6)(p25.1) other fragile site Approved 6p25.1 06p25.1 2001-06-22 2012-10-02 2402 +HGNC:3914 FRA6C fragile site, aphidicolin type, common, fra(6)(p22.2) other fragile site Approved 6p22.2 06p22.2 2001-06-22 2012-10-02 2403 +HGNC:3915 FRA6D fragile site, BrdU type, common, fra(6)(q13) other fragile site Approved 6q13 06q13 2001-06-22 2012-10-02 2404 +HGNC:3916 FRA6E fragile site, aphidicolin type, common, fra(6)(q26) other fragile site Approved 6q26 06q26 2001-06-22 2012-10-02 2405 "12874785|12719539" +HGNC:3917 FRA6F fragile site, aphidicolin type, common, fra(6)(q21) other fragile site Approved 6q21 06q21 2001-06-22 2012-10-02 2406 12370818 +HGNC:3918 FRA6G fragile site, aphidicolin type, common, fra(6)(q15) other fragile site Approved 6q15 06q15 1989-06-01 2407 +HGNC:3919 FRA7A fragile site, folic acid type, rare, fra(7)(p11.2) other fragile site Approved 7p11.2 07p11.2 2001-06-22 2012-10-02 2408 +HGNC:3920 FRA7B fragile site, aphidicolin type, common, fra(7)(p22) other fragile site Approved 7p22 07p22 2001-06-22 2012-10-02 2409 +HGNC:3921 FRA7C fragile site, aphidicolin type, common, fra(7)(p14.2) other fragile site Approved 7p14.2 07p14.2 2001-06-22 2012-10-02 2410 +HGNC:3922 FRA7D fragile site, aphidicolin type, common, fra(7)(p13) other fragile site Approved 7p13 07p13 2001-06-22 2012-10-02 2411 +HGNC:3923 FRA7E fragile site, aphidicolin type, common, fra(7)(q21.2) other fragile site Approved 7q21.2 07q21.2 2001-06-22 2012-10-02 2412 +HGNC:3924 FRA7F fragile site, aphidicolin type, common, fra(7)(q22) other fragile site Approved 7q22 07q22 2001-06-22 2012-10-02 2413 +HGNC:3925 FRA7G fragile site, aphidicolin type, common, fra(7)(q31.2) other fragile site Approved 7q31.2 07q31.2 D7S486 2001-06-22 2012-10-02 2414 12620387 +HGNC:3926 FRA7H fragile site, aphidicolin type, common, fra(7)(q32.3) other fragile site Approved 7q32.3 07q32.3 2001-06-22 2012-10-02 2415 +HGNC:3927 FRA7I fragile site, aphidicolin type, common, fra(7)(q36) other fragile site Approved 7q36 07q36 2001-06-22 2012-10-02 2416 +HGNC:3928 FRA7J fragile site, aphidicolin type, common, fra(7)(q11) other fragile site Approved 7q11 07q11 1989-06-01 2417 +HGNC:3929 FRA8A fragile site, folic acid type, rare, fra(8)(q22.3) other fragile site Approved 8q22.3 08q22.3 2001-06-22 2012-10-02 2418 +HGNC:3930 FRA8B fragile site, aphidicolin type, common, fra(8)(q22.1) other fragile site Approved 8q22.1 08q22.1 2001-06-22 2012-10-02 2419 +HGNC:3931 FRA8C fragile site, aphidicolin type, common, fra(8)(q24.1) other fragile site Approved 8q24.1 08q24.1 2001-06-22 2012-10-02 2421 +HGNC:3932 FRA8D fragile site, aphidicolin type, common, fra(8)(q24.3) other fragile site Approved 8q24.3 08q24.3 2001-06-22 2012-10-02 2422 +HGNC:3933 FRA8E fragile site, distamycin A type, rare, fra(8)(q24.1) other fragile site Approved 8q24.1 08q24.1 2001-06-22 2012-10-02 2423 +HGNC:3934 FRA8F entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:3935 FRA9A fragile site, folic acid type, rare, fra(9)(p21) other fragile site Approved 9p21 09p21 2001-06-22 2012-10-02 2425 +HGNC:3936 FRA9B fragile site, folic acid type, rare, fra(9)(q32) other fragile site Approved 9q32 09q32 2001-06-22 2012-10-02 2426 +HGNC:3937 FRA9C fragile site, BrdU type, common, fra(9)(p21) other fragile site Approved 9p21 09p21 2001-06-22 2012-10-02 2427 +HGNC:3938 FRA9D fragile site, aphidicolin type, common, fra(9)(q22.1) other fragile site Approved 9q22.1 09q22.1 2001-06-22 2012-10-02 2428 +HGNC:3939 FRA9E fragile site, aphidicolin type, common, fra(9)(q32) other fragile site Approved 9q32 09q32 2001-06-22 2012-10-02 2429 "12555072|15869410" +HGNC:3940 FRA9F fragile site, 5-azacytidine type, common, fra(9)(q12) other fragile site Approved 9q12 09q12 2001-06-22 2012-10-02 2430 +HGNC:3829 FRA10A fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) other fragile site Approved 10q23.3 or 10q24.2 10q23.3 or 10q24.2 1986-01-01 2006-12-11 2431 15203205 +HGNC:1162 FRA10AC1 FRA10A associated CGG repeat 1 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 C10orf4 "chromosome 10 open reading frame 4|fragile site, folic acid type, rare, fra(10)(q23.3) or fra(10)(q24.2) candidate 1" 2000-08-24 2010-05-25 2016-10-07 2016-10-07 118924 ENSG00000148690 OTTHUMG00000018776 uc001kiz.2 AK090955 NM_145246 CCDS7430 Q70Z53 15203205 MGI:1917817 RGD:1309482 FRA10AC1 608866 +HGNC:3830 FRA10B fragile site, BrdU type, rare, fra(10)(q25.2) other fragile site Approved 10q25.2 10q25.2 2001-06-22 2012-10-02 2432 AF053508 9660961 +HGNC:3831 FRA10C fragile site, BrdU type, common, fra(10)(q21) other fragile site Approved 10q21 10q21 2001-06-22 2012-10-02 2433 +HGNC:3832 FRA10D fragile site, aphidicolin type, common, fra(10)(q22.1) other fragile site Approved 10q22.1 10q22.1 2001-06-22 2012-10-02 2434 +HGNC:3833 FRA10E fragile site, aphidicolin type, common, fra(10)(q25.2) other fragile site Approved 10q25.2 10q25.2 2001-06-22 2012-10-02 2435 +HGNC:3834 FRA10F fragile site, aphidicolin type, common, fra(10)(q26.1) other fragile site Approved 10q26.1 10q26.1 2001-06-22 2012-10-02 2436 +HGNC:3835 FRA10G fragile site, aphidicolin type, common, fra(10)(q11.2) other fragile site Approved 10q11.2 10q11.2 1990-08-15 2437 +HGNC:3836 FRA11A fragile site, folic acid type, rare, fra(11)(q13.3) other fragile site Approved 11q13.3 11q13.3 2001-06-22 2012-10-02 2438 +HGNC:3837 FRA11B fragile site, folic acid type, rare, fra(11)(q23.3) other fragile site Approved 11q23.3 11q23.3 2001-06-22 2012-10-02 17063465 +HGNC:3838 FRA11C fragile site, aphidicolin type, common, fra(11)(p15.1) other fragile site Approved 11p15.1 11p15.1 2001-06-22 2012-10-02 2440 +HGNC:3839 FRA11D fragile site, aphidicolin type, common, fra(11)(p14.2) other fragile site Approved 11p14.2 11p14.2 2001-06-22 2012-10-02 2441 +HGNC:3840 FRA11E fragile site, aphidicolin type, common, fra(11)(p13) other fragile site Approved 11p13 11p13 2001-06-22 2012-10-02 2442 +HGNC:3841 FRA11F fragile site, aphidicolin type, common, fra(11)(q14.2) other fragile site Approved 11q14.2 11q14.2 2001-06-22 2012-10-02 2443 +HGNC:3842 FRA11G fragile site, aphidicolin type, common, fra(11)(q23.3) other fragile site Approved 11q23.3 11q23.3 2001-06-22 2012-10-02 2445 +HGNC:3843 FRA11H fragile site, aphidicolin type, common, fra(11)(q13) other fragile site Approved 11q13 11q13 2001-06-22 2012-10-02 2446 +HGNC:3844 FRA11I fragile site, distamycin A type, rare, fra(11)(p15.1) other fragile site Approved 11p15.1 11p15.1 1989-05-19 2447 +HGNC:3845 FRA12A fragile site, folic acid type, rare, fra(12)(q13.1) other fragile site Approved 12q13.1 12q13.1 2001-06-22 2012-10-02 2448 +HGNC:3846 FRA12B fragile site, aphidicolin type, common, fra(12)(q21.3) other fragile site Approved 12q21.3 12q21.3 2001-06-22 2012-10-02 2449 +HGNC:3847 FRA12C fragile site, BrdU type, rare, fra(12)(q24.2) other fragile site Approved 12q24.2 12q24.2 2001-06-22 2012-10-02 2450 +HGNC:3848 FRA12D fragile site, folic acid type, rare, fra(12)(q24.13) other fragile site Approved 12q24.13 12q24.13 2001-06-22 2012-10-02 2451 +HGNC:3849 FRA12E fragile site, aphidicolin type, common, fra(12)(q24) other fragile site Approved 12q24 12q24 2001-06-22 2012-10-02 2452 +HGNC:3850 FRA13A fragile site, aphidicolin type, common, fra(13)(q13.2) other fragile site Approved 13q13.2 13q13.2 2001-06-22 2012-10-02 2453 16244873 +HGNC:3851 FRA13B fragile site, BrdU type, common, fra(13)(q21) other fragile site Approved 13q21 13q21 2001-06-22 2012-10-02 2454 +HGNC:3852 FRA13C fragile site, aphidicolin type, common, fra(13)(q21.2) other fragile site Approved 13q21.2 13q21.2 2001-06-22 2012-10-02 2455 +HGNC:3853 FRA13D fragile site, aphidicolin type, common, fra(13)(q32) other fragile site Approved 13q32 13q32 1989-06-01 2003-10-09 2456 +HGNC:3854 FRA14B fragile site, aphidicolin type, common, fra(14)(q23) other fragile site Approved 14q23 14q23 2001-06-22 2012-10-02 2457 +HGNC:3855 FRA14C fragile site, aphidicolin type, common, fra(14)(q24.1) other fragile site Approved 14q24.1 14q24.1 2001-06-22 2012-10-02 2458 +HGNC:3856 FRA15A fragile site, aphidicolin type, common, fra(15)(q22) other fragile site Approved 15q22 15q22 2001-06-22 2012-10-02 2459 +HGNC:3857 FRA16A fragile site, folic acid type, rare, fra(16)(p13.11) other fragile site Approved 16p13.11 16p13.11 2001-06-22 2012-10-02 2460 S70397 +HGNC:3858 FRA16B fragile site, distamycin A type, rare, fra(16)(q22.1) other fragile site Approved 16q22.1 16q22.1 2001-06-22 2012-10-02 2461 U85253 14526167 +HGNC:3859 FRA16C fragile site, aphidicolin type, common, fra(16)(q22.1) other fragile site Approved 16q22.1 16q22.1 2001-06-22 2012-10-02 2462 +HGNC:3860 FRA16D fragile site, aphidicolin type, common, fra(16)(q23.2) other fragile site Approved 16q23.2 16q23.2 2001-06-22 2012-10-02 2463 14603443 MGI:2450537 +HGNC:3861 FRA16E fragile site, distamycin A type, rare, fra(16)(p12.1) other fragile site Approved 16p12.1 16p12.1 1989-06-01 2003-10-09 2464 +HGNC:3862 FRA17A fragile site, distamycin A type, rare, fra(17)(p12) other fragile site Approved 17p12 17p12 2001-06-22 2012-10-02 2465 +HGNC:3863 FRA17B fragile site, aphidicolin type, common, fra(17)(q23.1) other fragile site Approved 17q23.1 17q23.1 2001-06-22 2012-10-02 2466 +HGNC:3864 FRA18A fragile site, aphidicolin type, common, fra(18)(q12.2) other fragile site Approved 18q12.2 18q12.2 2001-06-22 2012-10-02 2467 +HGNC:3865 FRA18B fragile site, aphidicolin type, common, fra(18)(q21.3) other fragile site Approved 18q21.3 18q21.3 2001-06-22 2012-10-02 2468 +HGNC:16929 FRA18C fragile site, aphidicolin type, common, fra(18)(q22.2) other fragile site Approved 18q22.2 18q22.2 fragile site, folic acid type, rare, fra(18)(q22.1) 2001-10-17 2008-05-28 2008-05-28 116710 17475918 +HGNC:3866 FRA19A fragile site, 5-azacytidine type, common, fra(19)(q13) other fragile site Approved 19q13 19q13 2001-06-22 2012-10-02 2469 "4077049|2579891" +HGNC:3867 FRA19B fragile site, folic acid type, rare, fra(19)(p13) other fragile site Approved 19p13 19p13 2001-06-22 2012-10-02 2470 +HGNC:3881 FRA20A fragile site, folic acid type, rare, fra(20)(p11.23) other fragile site Approved 20p11.23 20p11.23 2001-06-22 2012-10-02 2471 +HGNC:3882 FRA20B fragile site, aphidicolin type, common, fra(20)(p12.2) other fragile site Approved 20p12.2 20p12.2 2001-06-22 2012-10-02 2472 +HGNC:3883 FRA22A fragile site, folic acid type, rare, fra(22)(q13) other fragile site Approved 22q13 22q13 2001-06-22 2012-10-02 2473 +HGNC:3884 FRA22B fragile site, aphidicolin type, common, fra(22)(q12.2) other fragile site Approved 22q12.2 22q12.2 2001-06-22 2012-10-02 2474 +HGNC:19185 FRAS1 Fraser extracellular matrix complex subunit 1 protein-coding gene gene with protein product Approved 4q21.21 04q21.21 "FLJ22031|FLJ14927|KIAA1500" Fraser syndrome 1 2003-02-25 2014-06-25 2014-11-19 80144 ENSG00000138759 OTTHUMG00000160856 uc003hlb.2 AB040933 XM_006714316 "CCDS54772|CCDS54771" Q86XX4 "12766769|3118036" MGI:2385368 RGD:1306516 FRAS1 607830 121922 +HGNC:3944 FRAT1 frequently rearranged in advanced T-cell lymphomas 1 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 frequently rearranged in advanced T-cell lymphomas 2000-04-13 2014-05-09 2015-09-09 10023 ENSG00000165879 OTTHUMG00000018848 uc001knc.2 U58975 NM_005479 CCDS7455 Q92837 9034327 MGI:109450 RGD:9147096 FRAT1 602503 +HGNC:16048 FRAT2 frequently rearranged in advanced T-cell lymphomas 2 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 GSK-3 binding protein FRAT2 2001-07-06 2016-10-05 23401 ENSG00000181274 OTTHUMG00000018850 uc001knd.2 AF062739 NM_012083 CCDS7456 O75474 "9635432|11237732" MGI:2673967 RGD:1591882 FRAT2 605006 +HGNC:3945 FRAXA fragile site, folic acid type, rare, fra(X)(q27.3) A (macroorchidism, mental retardation) other fragile site Approved Xq27.3 Xq27.3 1986-01-01 2005-02-25 2477 +HGNC:3946 FRAXB fragile site, aphidicolin type, common, fra(X)(p22.31) B other fragile site Approved Xp22.31 Xp22.31 2001-06-22 2012-10-02 2478 11746990 +HGNC:3947 FRAXC fragile site, aphidicolin type, common, fra(X)(q22.1) C other fragile site Approved Xq22.1 Xq22.1 2001-06-22 2012-10-02 2479 +HGNC:3948 FRAXD fragile site, aphidicolin type, common, fra(X)(q27.2) D other fragile site Approved Xq27.2 Xq27.2 2001-06-22 2012-10-02 2480 +HGNC:3949 FRAXE fragile site, folic acid type, rare, fra(X)(q28) E other fragile site Approved Xq28 Xq28 1992-08-24 2005-02-25 2481 1605195 +HGNC:3950 FRAXF fragile site, folic acid type, rare, fra(X)(q28) F other fragile site Approved Xq28 Xq28 1994-04-14 2005-02-25 2482 L35600 "8499907|7874164" +HGNC:3952 FRDA2 Friedreich ataxia 2 phenotype phenotype only Approved 9p23-p11 09p23-p11 1997-10-16 2002-12-11 2420 "10735274|11523563" 601992 +HGNC:23399 FREM1 FRAS1 related extracellular matrix 1 protein-coding gene gene with protein product Approved 9p22.3 09p22.3 "FLJ25461|C9orf145|C9orf143|DKFZp686M16108|TILRR" C9orf154 chromosome 9 open reading frame 154 C-type lectin domain containing 1298 2004-04-29 2004-12-15 2004-12-15 2015-09-11 158326 ENSG00000164946 OTTHUMG00000019575 uc003zlm.3 AK058190 NM_144966 "CCDS47952|CCDS55293" Q5H8C1 "12838346|15345741" MGI:2670972 RGD:1306981 FREM1 608944 220909 +HGNC:25396 FREM2 FRAS1 related extracellular matrix protein 2 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 DKFZp686J0811 2004-12-15 2015-09-11 341640 ENSG00000150893 OTTHUMG00000016759 uc001uwv.4 BX538150 NM_207361 CCDS31960 Q5SZK8 15345741 MGI:2444465 RGD:1566012 FREM2 608945 121927 +HGNC:39964 FREM2-AS1 FREM2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 FREM2 antisense RNA 1 (non-protein coding) 2011-04-18 2012-08-15 2014-11-19 100874073 ENSG00000225350 OTTHUMG00000016760 uc058wnm.1 XR_001749833 +HGNC:25172 FREM3 FRAS1 related extracellular matrix 3 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 2004-12-15 2015-09-11 166752 ENSG00000183090 OTTHUMG00000161577 uc021xsj.2 BX091796 XM_094074 CCDS54808 P0C091 15345741 MGI:2685641 RGD:1562701 FREM3 608946 +HGNC:3954 FRG1 FSHD region gene 1 protein-coding gene gene with protein product Approved 4q35.2 04q35.2 "FSG1|FRG1A" 1996-08-16 2016-10-05 2483 ENSG00000109536 OTTHUMG00000160202 uc003izs.4 L76159 NM_004477 CCDS34121 Q14331 8733123 MGI:893597 RGD:1585495 FRG1 601278 121930 +HGNC:15792 FRG1BP FSHD region gene 1 family member B, pseudogene pseudogene pseudogene Approved 20q11.1 20q11.1 bA348I14.2 "C20orf80|FRG1B" "chromosome 20 open reading frame 80|FSHD region gene 1 family, member B" 2001-09-17 2015-07-13 2015-07-13 2015-07-13 284802 ENSG00000149531 OTTHUMG00000032157 NR_003579 +HGNC:51762 FRG1CP FSHD region gene 1 family member C, pseudogene pseudogene pseudogene Approved 20q11.1 20q11.1 2015-07-13 2015-07-13 2015-07-13 2015-07-13 100289097 ENSG00000282826 OTTHUMG00000191531 NR_132315 PGOHUM00000296939 +HGNC:51763 FRG1DP FSHD region gene 1 family member D, pseudogene pseudogene pseudogene Approved 20q11.1 20q11.1 2015-07-13 2015-07-13 2015-07-13 102723316 ENSG00000282870 OTTHUMG00000191532 NR_132316 PGOHUM00000297084 +HGNC:51764 FRG1EP FSHD region gene 1 family member E, pseudogene pseudogene pseudogene Approved 20q11.1 20q11.1 2015-07-13 2015-07-13 102723390 ENSG00000282995 OTTHUMG00000191533 NG_042232 PGOHUM00000296946 +HGNC:51767 FRG1HP FSHD region gene 1 family member H, pseudogene pseudogene pseudogene Approved 9p11.2 09p11.2 2015-07-13 2015-07-13 100132352 ENSG00000276291 OTTHUMG00000188611 NR_034006 PGOHUM00000304207 +HGNC:51768 FRG1JP FSHD region gene 1 family member J, pseudogene pseudogene pseudogene Approved 9q13 09q13 NB - could be FRG1IP depending on decision re FRG1H/P 2015-07-13 2015-07-13 642236 ENSG00000215548 OTTHUMG00000058676 NR_033907 PGOHUM00000303876 +HGNC:51769 FRG1KP FSHD region gene 1 family member K, pseudogene pseudogene pseudogene Approved 9q21.11 09q21.11 NB - could be FRG1JP depending on decision re FRG1H/P 2015-07-13 2015-07-13 102724923 ENSG00000280286 OTTHUMG00000189283 PGOHUM00000303902 +HGNC:19136 FRG2 FSHD region gene 2 protein-coding gene gene with protein product Approved 4q35.2 04q35.2 FRG2A 2007-10-11 2015-09-09 448831 ENSG00000205097 OTTHUMG00000160339 uc003izv.4 NM_001005217 "CCDS34123|CCDS68834" Q64ET8 "12176321|15520407" "MGI:3035485|MGI:3643939|MGI:3643940|MGI:3644083|MGI:3647962|MGI:3647970|MGI:3648177|MGI:3648470|MGI:3779574|MGI:3779576|MGI:3782845|MGI:3782846|MGI:3805017" RGD:1592623 FRG2 609032 +HGNC:33518 FRG2B FSHD region gene 2 family member B protein-coding gene gene with protein product Approved 10q26.3 10q26.3 FSHD region gene 2 family, member B 2007-10-11 2015-11-18 2015-11-18 441581 ENSG00000225899 OTTHUMG00000019328 uc010qvg.2 AY744466 NM_001080998 CCDS44502 Q96QU4 15520407 "MGI:3035485|MGI:3643939|MGI:3643940|MGI:3644083|MGI:3647962|MGI:3647970|MGI:3648177|MGI:3648470|MGI:3779574|MGI:3779576|MGI:3782845|MGI:3782846|MGI:3805017" FRG2B +HGNC:33626 FRG2C FSHD region gene 2 family member C protein-coding gene gene with protein product Approved 3p12.3 03p12.3 FSHD region gene 2 family, member C 2007-10-11 2015-11-18 2015-11-18 100288801 ENSG00000172969 OTTHUMG00000158963 uc003dpt.6 NM_001124759.1 CCDS43108 A6NGY1 FRG2C +HGNC:27093 FRG2DP FSHD region gene 2 family member D, pseudogene pseudogene pseudogene Approved 16p11.1 16p11.1 FSHD region gene 2 family, member D, pseudogene 2014-10-16 2015-11-18 2015-11-18 146481 ENSG00000261711 OTTHUMG00000176004 NR_026980 12477932 PGOHUM00000293582 +HGNC:51365 FRG2EP FSHD region gene 2 family member E, pseudogene pseudogene pseudogene Approved 20q11.1 20q11.1 FSHD region gene 2 family, member E, pseudogene 2014-10-16 2015-11-18 2015-11-18 647476 ENSG00000282842 OTTHUMG00000191524 NR_037925 PGOHUM00000296943 +HGNC:51366 FRG2FP FSHD region gene 2 family member F, pseudogene pseudogene pseudogene Approved 3q29 03q29 TCONS_l2_00020053 FSHD region gene 2 family, member F, pseudogene 2014-10-16 2015-11-18 2015-11-18 100128827 ENSG00000232783 OTTHUMG00000155373 NG_030115 PGOHUM00000299715 +HGNC:51364 FRG2GP FSHD region gene 2 family member G, pseudogene pseudogene pseudogene Approved 16p11.1 16p11.1 FSHD region gene 2 family, member G, pseudogene 2014-10-16 2015-11-18 2015-11-18 106480321 ENSG00000260291 OTTHUMG00000176251 NG_044437 PGOHUM00000293576 +HGNC:51794 FRG2HP FSHD region gene 2 family member H, pseudogene pseudogene pseudogene Approved 16p11.1 16p11.1 2015-06-09 2015-06-09 2015-06-09 101059920 ENSG00000260846 OTTHUMG00000176246 PGOHUM00000293574 +HGNC:51795 FRG2IP FSHD region gene 2 family member I, pseudogene pseudogene pseudogene Approved 16p11.1 16p11.1 2015-06-09 2015-06-09 106480351 ENSG00000260598 OTTHUMG00000175999 NG_044668 PGOHUM00000293578 +HGNC:51796 FRG2JP FSHD region gene 2 family member J, pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 2015-06-09 2015-06-09 101059926 ENSG00000259897 OTTHUMG00000176243 PGOHUM00000293572 +HGNC:51797 FRG2KP FSHD region gene 2 family member K, pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 2015-06-09 2015-06-09 102724018 ENSG00000261741 OTTHUMG00000176625 NR_135055 PGOHUM00000293513 +HGNC:51798 FRG2LP FSHD region gene 2 family member L, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 2015-06-09 2015-06-09 106480352 ENSG00000267704 OTTHUMG00000182059 NG_044674 PGOHUM00000294736 +HGNC:51799 FRG2MP FSHD region gene 2 family member M, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 2015-06-09 2015-06-09 106481739 ENSG00000275170 OTTHUMG00000187953 NG_043527 PGOHUM00000297219 +HGNC:51844 FRGCA FOXM1-regulated, gastric cancer associated non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 LncRNA-AP001631.9 2015-08-26 2015-08-26 106481742 ENSG00000236663 OTTHUMG00000086845 NR_133677 26261500 +HGNC:3955 FRK fyn related Src family tyrosine kinase protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "RAK|GTK" PTK5 "PTK5 protein tyrosine kinase 5|fyn-related kinase|fyn-related Src family tyrosine kinase" SH2 domain containing 741 1995-02-08 2016-03-14 2016-10-05 2444 ENSG00000111816 OTTHUMG00000015424 uc003pwi.2 U00803 NM_002031 CCDS5103 P42685 7510261 MGI:103265 RGD:621423 FRK 606573 objectId:2025 2.7.10.1 +HGNC:21240 FRMD1 FERM domain containing 1 protein-coding gene gene with protein product Approved 6q27 06q27 "FLJ00181|DKFZp434O0117|FLJ40260|FLJ22615|bA164L23.1" FERM domain containing 1293 2003-05-29 2014-11-19 79981 ENSG00000153303 OTTHUMG00000016037 uc003qwo.5 NM_024919 "CCDS5306|CCDS47518" Q8N878 RGD:1588779 FRMD1 +HGNC:24125 FRMD3 FERM domain containing 3 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 "EPB41L4O|MGC20553" FERM domain containing 1293 2004-01-27 2016-10-05 257019 ENSG00000172159 OTTHUMG00000020103 uc004ams.3 AK094281 NM_174938 "CCDS43840|CCDS59131|CCDS59132|CCDS59133|CCDS75852" A2A2Y4 12601556 MGI:2442466 RGD:1304802 FRMD3 607619 +HGNC:25491 FRMD4A FERM domain containing 4A protein-coding gene gene with protein product Approved 10p13 10p13 "FLJ10210|KIAA1294|bA295P9.4" FRMD4 FERM domain containing 4 FERM domain containing 1293 2004-02-05 2004-07-15 2004-07-15 2016-10-05 55691 ENSG00000151474 OTTHUMG00000017708 uc001ims.4 AB037715 NM_018027 CCDS7101 Q9P2Q2 10718198 MGI:1919850 RGD:1309050 FRMD4A 616305 +HGNC:24886 FRMD4B FERM domain containing 4B protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "KIAA1013|GRSP1" FERM domain containing 1293 2004-07-15 2016-10-05 23150 ENSG00000114541 OTTHUMG00000158772 uc003dnv.3 AL832231 XM_017005989 CCDS46863 Q9Y2L6 "10231032|11445584" MGI:2141794 RGD:620172 FRMD4B +HGNC:28214 FRMD5 FERM domain containing 5 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 MGC14161 FERM domain containing 1293 2005-07-20 2015-08-25 84978 ENSG00000171877 OTTHUMG00000060475 uc001ztl.5 BC007796 NM_032892 "CCDS10107|CCDS73715|CCDS73716" Q7Z6J6 MGI:2442557 RGD:1561554 FRMD5 616309 +HGNC:19839 FRMD6 FERM domain containing 6 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "MGC17921|willin|EX1" expanded homolog C14orf31 chromosome 14 open reading frame 31 FERM domain containing 1293 2002-11-27 2005-07-20 2005-07-20 2015-08-25 122786 ENSG00000139926 OTTHUMG00000140294 uc001wzb.5 BI465118 NM_152330 "CCDS9704|CCDS58318|CCDS58319" Q96NE9 MGI:2442579 RGD:727810 FRMD6 614555 +HGNC:20129 FRMD6-AS1 FRMD6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q22.1 14q22.1 C14orf82 "chromosome 14 open reading frame 82|FRMD6 antisense RNA 1 (non-protein coding)" 2002-12-18 2011-12-07 2012-08-15 2016-10-05 145438 ENSG00000273888 OTTHUMG00000186832 uc021rtc.2 NR_037676 P0C7T7 +HGNC:43637 FRMD6-AS2 FRMD6 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 14q22.1 14q22.1 FRMD6 antisense RNA 2 (non-protein coding) 2011-12-07 2012-08-15 2012-10-12 100874185 ENSG00000258537 OTTHUMG00000171076 uc031qon.1 NR_051990 +HGNC:8079 FRMD7 FERM domain containing 7 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 FLJ43346 "NYS|NYS1" nystagmus 1, congenital FERM domain containing 1293 2001-06-22 2006-09-01 2006-09-01 2016-10-12 90167 ENSG00000165694 OTTHUMG00000022421 uc004ewn.4 AL161984 NM_194277 "CCDS35397|CCDS78504" Q6ZUT3 "2063919|17013395" MGI:2686379 RGD:1562057 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FRMD7|LRG_867|http://www.lrg-sequence.org/LRG/LRG_867" FRMD7 300628 121933 +HGNC:25462 FRMD8 FERM domain containing 8 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "FLJ90369|FKSG44" FERM domain containing 1293 2007-08-14 2014-11-28 83786 ENSG00000126391 OTTHUMG00000166275 uc001odu.5 AK074850 NM_031904 "CCDS8102|CCDS73320|CCDS76432" Q9BZ67 12477932 MGI:1914707 RGD:1310323 FRMD8 +HGNC:24690 FRMD8P1 FERM domain containing 8 pseudogene 1 pseudogene pseudogene Approved Xq12 Xq12 FKSG43 2011-12-01 2011-12-01 83957 ENSG00000227942 OTTHUMG00000021721 NM_032033 Q9BZ68 PGOHUM00000241357 +HGNC:29159 FRMPD1 FERM and PDZ domain containing 1 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 "KIAA0967|FRMD2" "PDZ domain containing|FERM domain containing" "1220|1293" 2004-01-05 2016-10-05 22844 ENSG00000070601 OTTHUMG00000019927 uc004aag.2 AB023184 NM_014907 CCDS6612 Q5SYB0 10231032 MGI:2446274 RGD:1305229 FRMPD1 616919 +HGNC:28572 FRMPD2 FERM and PDZ domain containing 2 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 MGC35285 "PDZD5C|PDZK5C" PDZ domain containing 5C "PDZ domain containing|FERM domain containing" "1220|1293" 2004-04-15 2016-10-05 143162 ENSG00000170324 OTTHUMG00000018171 uc001jgi.5 AK123038 NM_152428 "CCDS31195|CCDS81460" Q68DX3 MGI:2685472 RGD:1565652 FRMPD2 613323 +HGNC:16843 FRMPD2B FERM and PDZ domain containing 2B, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 "yX59F3.2|bA556L1.2" "PDZK5A|PDZD5A|FRMPD2L1|FRMPD2P2|PDZK5B|PDZD5B|FRMPD2L2|FRMPD2P1" "PDZ domain containing 5A|FERM and PDZ domain containing 2 like 1|FERM and PDZ domain containing 2 pseudogene 2|PDZ domain containing 5B|FERM and PDZ domain containing 2 like 2|FERM and PDZ domain containing 2 pseudogene 1" PDZ domain containing 1220 2004-07-09 2014-07-15 2014-07-15 2015-02-03 728798 ENSG00000150175 OTTHUMG00000018093 NR_033172 Q6IN97 PGOHUM00000290148 +HGNC:29382 FRMPD3 FERM and PDZ domain containing 3 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "RP5-1070B1.1|KIAA1817" "PDZ domain containing|FERM domain containing" "1220|1293" 2006-02-09 2016-10-05 84443 ENSG00000147234 OTTHUMG00000022165 uc033eqj.1 AB058720 XM_042978 CCDS76006 Q5JV73 11347906 MGI:3646547 RGD:1563753 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FRMPD3 FRMPD3 +HGNC:41239 FRMPD3-AS1 FRMPD3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq22.3 Xq22.3 FRMPD3 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100874122 ENSG00000227610 OTTHUMG00000022164 uc033eqi.2 NR_046750 +HGNC:29007 FRMPD4 FERM and PDZ domain containing 4 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 KIAA0316 "PDZK10|PDZD10" PDZ domain containing 10 "PDZ domain containing|FERM domain containing" "1220|1293" 2004-06-14 2006-02-09 2006-02-09 2016-10-05 9758 ENSG00000169933 OTTHUMG00000021138 uc004cuz.2 AB002314 XM_045712 CCDS35201 Q14CM0 9205841 MGI:3042378 RGD:1566031 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FRMPD4 FRMPD4 300838 +HGNC:41222 FRMPD4-AS1 FRMPD4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.2 Xp22.2 FRMPD4 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100874121 ENSG00000223487 OTTHUMG00000021135 uc064xzq.1 +HGNC:27622 FRRS1 ferric chelate reductase 1 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 SDR2 SDFR2 "stromal cell derived factor receptor 2 homolog (mouse)|ferric-chelate reductase 1" 2005-08-01 2006-02-22 2016-01-21 2016-10-05 391059 ENSG00000156869 OTTHUMG00000010768 uc001dsh.1 AK131302 NM_001013660 CCDS30780 Q6ZNA5 MGI:108076 RGD:1306883 FRRS1 611578 +HGNC:1362 FRRS1L ferric chelate reductase 1 like protein-coding gene gene with protein product Approved 9q31.3 09q31.3 CG-6 C9orf4 "chromosome 9 open reading frame 4|ferric-chelate reductase 1-like" 1999-01-28 2012-03-06 2016-01-21 2016-01-21 23732 ENSG00000260230 OTTHUMG00000020468 uc004bdv.4 AF155065 NM_014334 CCDS35098 Q9P0K9 10603000 MGI:2442704 RGD:1309978 604574 +HGNC:16971 FRS2 fibroblast growth factor receptor substrate 2 protein-coding gene gene with protein product Approved 12q15 12q15 "SNT-1|FRS2alpha|SNT1|FRS2A" 2003-05-23 2015-09-07 10818 ENSG00000166225 OTTHUMG00000169373 uc009zrk.5 AF036717 NM_006654 CCDS41809 Q8WU20 "8761293|9660748" MGI:1100860 RGD:1308201 FRS2 607743 +HGNC:16970 FRS3 fibroblast growth factor receptor substrate 3 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "SNT-2|FRS2beta|FRS2B" 2003-05-23 2015-08-25 10817 ENSG00000137218 OTTHUMG00000014686 uc003orc.3 AF036718 NM_006653 CCDS4860 O43559 "8761293|9660748" MGI:2135965 RGD:1310226 FRS3 607744 +HGNC:3956 FRV1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3957 FRV2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:3958 FRV3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:20367 FRY FRY microtubule binding protein protein-coding gene gene with protein product Approved 13q13.1 13q13.1 "bA37E23.1|13CDNA73|CG003" C13orf14 "chromosome 13 open reading frame 14|furry homolog (Drosophila)" 2004-04-16 2005-11-24 2015-11-13 2015-11-13 10129 ENSG00000073910 OTTHUMG00000016696 uc001utx.4 AL049784 NM_023037 CCDS41875 Q5TBA9 "8812419|14702039|23886946" MGI:2443895 RGD:1307034 FRY 614818 +HGNC:39725 FRY-AS1 FRY antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q13.1 13q13.1 FRY antisense RNA 1 (non-protein coding) 2011-03-24 2012-08-15 2014-11-19 100507099 ENSG00000237637 OTTHUMG00000016692 uc001utw.5 BC035084 NR_103839 +HGNC:29127 FRYL FRY like transcription coactivator protein-coding gene gene with protein product Approved 4p11 04p11 "DKFZp686E205|AF4p12|MOR2" mor2 cell polarity protein homolog (S. pombe) KIAA0826 "KIAA0826|furry homolog-like (Drosophila)|FRY like" 2004-09-15 2005-11-24 2015-11-13 2016-10-05 285527 ENSG00000075539 OTTHUMG00000160608 uc003gyh.1 AL833170 XM_011513680 CCDS43227 O94915 "10048485|23022380" MGI:1919563 RGD:1311309 FRYL +HGNC:3959 FRZB frizzled-related protein protein-coding gene gene with protein product Approved 2q32.1 02q32.1 "FRZB-PEN|FRZB1|SRFP3|FRP-3|SFRP3|FRE|FRITZ|FRZB-1|FZRB|hFIZ" secreted frizzled-related protein 3 Secreted frizzled-related proteins 733 1998-07-15 2015-11-12 2487 ENSG00000162998 OTTHUMG00000132597 uc002upa.4 U24163 NM_001463 CCDS2286 Q92765 "8824257|9118218" MGI:892032 RGD:1311315 FRZB 605083 +HGNC:43653 FSBP fibrinogen silencer binding protein protein-coding gene gene with protein product Approved 8q22.1 08q22.1 2012-01-10 2015-09-07 100861412 ENSG00000265817 OTTHUMG00000178341 uc003ygm.4 NM_001256141 CCDS59106 O95073 20531236 MGI:5301008 RGD:7611658 FSBP 616306 +HGNC:20494 FSCB fibrous sheath CABYR binding protein protein-coding gene gene with protein product Approved 14q21.2 14q21.2 DKFZP434F1017 C14orf155 chromosome 14 open reading frame 155 2004-06-11 2007-11-22 2007-11-22 2016-10-05 84075 ENSG00000189139 OTTHUMG00000140262 uc001wvn.4 AK124110 NM_032135 CCDS9679 Q5H9T9 17855365 MGI:3646964 RGD:1561721 FSCB 611779 +HGNC:11148 FSCN1 fascin actin-bundling protein 1 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "p55|FLJ38511" "Singed, drosophila, homolog-like|actin bundling protein" SNL "singed (Drosophila)-like (sea urchin fascin homolog like)|fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)" Fascins 3 1995-01-16 2002-09-20 2014-02-03 2016-10-05 6624 ENSG00000075618 OTTHUMG00000090599 uc003sou.4 U03057 NM_003088 CCDS5342 Q16658 "8068206|10783262" MGI:1352745 RGD:1583309 FSCN1 602689 +HGNC:49669 FSCN1P1 fascin actin-bundling protein 1 pseudogene 1 pseudogene pseudogene Approved 15q14 15q14 2014-02-03 2014-02-03 145989 ENSG00000261559 OTTHUMG00000173389 NG_002332 PGOHUM00000258955 +HGNC:3960 FSCN2 fascin actin-bundling protein 2, retinal protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "RP30|RFSN" "fascin (Strongylocentrotus purpuratus) homolog 2 (actin-bundling protein, retinal)|fascin homolog 2, actin-bundling protein, retinal (Strongylocentrotus purpuratus)" Fascins 3 2000-02-29 2014-02-03 2016-10-05 25794 ENSG00000186765 OTTHUMG00000167477 uc010wup.3 AF030165 NM_012418 "CCDS45810|CCDS45811" O14926 10234509 MGI:2443337 RGD:1308941 Mutations of the Fascin Gene|http://www.retina-international.org/files/sci-news/fscn2mut.htm FSCN2 607643 121938 +HGNC:3961 FSCN3 fascin actin-bundling protein 3 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "fascin (Strongylocentrotus purpuratus) homolog 3 (actin-bundling protein, testicular)|fascin homolog 3, actin-bundling protein, testicular (Strongylocentrotus purpuratus)|fascin actin-bundling protein 3, testicular" Fascins 3 2000-02-29 2015-11-26 2016-10-05 29999 ENSG00000106328 OTTHUMG00000022935 uc003vmd.3 NM_020369 CCDS34746 Q9NQT6 11925108 MGI:1890386 RGD:1303047 FSCN3 615800 +HGNC:13745 FSD1 fibronectin type III and SPRY domain containing 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MGC3213|MIR1" fibronectin type 3 and SPRY domain containing 1 Fibronectin type III domain containing 555 2003-11-10 2005-03-01 2015-09-07 79187 ENSG00000105255 OTTHUMG00000181881 uc002lzy.3 AF316829 NM_024333 "CCDS12127|CCDS82277" Q9BTV5 11267680 MGI:1934858 RGD:1583850 FSD1 609828 +HGNC:13753 FSD1L fibronectin type III and SPRY domain containing 1 like protein-coding gene gene with protein product Approved 9q31.2 09q31.2 "CSDUFD1|CCDC10|FSD1NL|FSD1CL" "cystatin and DUF19 domain containing 1|coiled-coil domain containing 10|fibronectin type III and SPRY domain containing 1-like" Fibronectin type III domain containing 555 2001-12-05 2006-03-10 2016-03-15 2016-10-05 83856 ENSG00000106701 OTTHUMG00000020426 uc033ded.2 AF316830 NM_207647 "CCDS47999|CCDS6764|CCDS6765|CCDS75870|CCDS83391" Q9BXM9 11267680 MGI:2442443 RGD:1564809 FSD1L 609829 +HGNC:18024 FSD2 fibronectin type III and SPRY domain containing 2 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 RP11-127F21 SPRYD1 SPRY domain containing 1 Fibronectin type III domain containing 555 2002-01-29 2006-01-11 2006-01-11 2015-08-25 123722 ENSG00000186628 OTTHUMG00000172400 uc002bjd.4 AK122875 NM_001007122 "CCDS45332|CCDS61738" A1L4K1 MGI:2444310 RGD:1305167 FSD2 +HGNC:3964 FSHB follicle stimulating hormone beta subunit protein-coding gene gene with protein product Approved 11p14.1 11p14.1 follitropin, beta chain follicle stimulating hormone, beta polypeptide Endogenous ligands 542 1986-01-01 2016-01-14 2016-01-15 2488 ENSG00000131808 OTTHUMG00000166146 uc001msm.4 NM_000510 CCDS7868 P01225 "2885163|3151250" MGI:95582 RGD:2630 FSHB 136530 121941 +HGNC:3966 FSHMD1A facioscapulohumeral muscular dystrophy 1A phenotype phenotype only Approved 4q35 04q35 "FMD|FSHD" 1994-02-22 2011-02-10 2489 +HGNC:3967 FSHMD1B facioscapulohumeral muscular dystrophy 1B phenotype phenotype only Approved reserved reserved 1994-02-22 2007-07-13 2490 "8328457|10732819|7927331" +HGNC:3969 FSHR follicle stimulating hormone receptor protein-coding gene gene with protein product Approved 2p16.3 02p16.3 "FSHRO|LGR1" ODG1 Glycoprotein hormone receptors 199 1991-07-09 2016-10-12 2492 ENSG00000170820 OTTHUMG00000129259 uc002rww.4 XM_011532733 "CCDS1843|CCDS1844" P23945 "8230163|8855829" MGI:95583 RGD:2632 LRG_536|http://www.lrg-sequence.org/LRG/LRG_536 FSHR 136435 121943 objectId:253 +HGNC:21674 FSIP1 fibrous sheath interacting protein 1 protein-coding gene gene with protein product Approved 15q14 15q14 FLJ35989 2004-06-21 2014-11-19 161835 ENSG00000150667 OTTHUMG00000172456 uc001zki.4 BC045191 NM_152597 CCDS10050 Q8NA03 14702039 MGI:1918563 RGD:1306874 FSIP1 615795 +HGNC:21675 FSIP2 fibrous sheath interacting protein 2 protein-coding gene gene with protein product Approved 2q32.1 02q32.1 FLJ34780 2004-06-21 2014-11-19 401024 ENSG00000188738 OTTHUMG00000153874 uc002upl.3 AK092099 NM_173651 CCDS54426 Q5CZC0 14702039 MGI:2664111 RGD:1593013 FSIP2 615796 +HGNC:40978 FSIP2-AS1 FSIP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q32.1 02q32.1 2014-07-29 2014-11-19 102724349 ENSG00000231646 OTTHUMG00000155450 +HGNC:3971 FST follistatin protein-coding gene gene with protein product Approved 5q11.2 05q11.2 FS 1999-09-07 2015-08-25 10468 ENSG00000134363 OTTHUMG00000131183 uc003jpd.4 M19481 NM_013409 "CCDS3959|CCDS43315" P19883 "10411917|3380788" MGI:95586 RGD:2633 FST 136470 I01.966 +HGNC:3972 FSTL1 follistatin like 1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "FRP|FSL1|OCC1|OCC-1|tsc36" follistatin-like 1 SPARC family 1278 1999-09-07 2015-11-11 2016-06-09 11167 ENSG00000163430 OTTHUMG00000159440 uc003eds.4 U06863 NM_007085 CCDS2998 Q12841 "7957230|9786430" MGI:102793 RGD:68955 FSTL1 605547 I01.967 +HGNC:3973 FSTL3 follistatin like 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "FLRG|FSRP" follistatin-related protein follistatin-like 3 (secreted glycoprotein) 1999-09-07 2016-01-21 2016-10-05 10272 ENSG00000070404 OTTHUMG00000180593 uc002lpk.3 U76702 NM_005860 CCDS12040 O95633 "9671416|15527507" MGI:1890391 RGD:621811 FSTL3 605343 I01.968 +HGNC:21389 FSTL4 follistatin like 4 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 KIAA1061 follistatin-like 4 "I-set domain containing|Immunoglobulin like domain containing|EF-hand domain containing" "593|594|863" 2004-04-05 2016-01-21 2016-01-21 23105 ENSG00000053108 OTTHUMG00000162729 uc003kyn.2 AB028984 XM_048786 CCDS34238 Q6MZW2 "10470851|15527507" MGI:2443199 RGD:1307227 FSTL4 I01.977 +HGNC:21386 FSTL5 follistatin like 5 protein-coding gene gene with protein product Approved 4q32.2 04q32.2 "DKFZp566D234|KIAA1263" follistatin-like 5 "I-set domain containing|EF-hand domain containing" "593|863" 2004-04-05 2016-01-21 2016-10-05 56884 ENSG00000168843 OTTHUMG00000161397 uc003iqh.5 BC036502 NM_020116 "CCDS3802|CCDS47157|CCDS47158" Q8N475 "10574462|15527507" MGI:2442179 RGD:1306858 FSTL5 I01.977 +HGNC:3974 FTCD formimidoyltransferase cyclodeaminase protein-coding gene gene with protein product Approved 21q22.3 21q22.3 formiminotransferase cyclodeaminase 1999-07-23 2013-06-10 2015-08-25 10841 ENSG00000160282 OTTHUMG00000090488 uc010gqg.2 U91541 NM_006657 "CCDS13731|CCDS82684" O95954 "10029623|10773664" MGI:1339962 RGD:70915 FTCD 606806 121951 "2.1.2.5|4.3.1.4" +HGNC:40243 FTCD-AS1 FTCD antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 FTCD antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100861507 ENSG00000237338 OTTHUMG00000090486 uc062ayk.1 "AA905381|AI217733" +HGNC:48661 FTCDNL1 formiminotransferase cyclodeaminase N-terminal like other unknown Approved 2q33.1 02q33.1 FONG formiminotransferase N-terminal sub-domain containing gene 2013-06-01 2014-10-06 348751 ENSG00000226124 OTTHUMG00000154481 BC039445 NR_034096 E5RQL4 21573128 614308 +HGNC:3976 FTH1 ferritin heavy chain 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "FTH|PLIF|PIG15|FHC" "apoferritin|placenta immunoregulatory factor|proliferation-inducing protein 15" FTHL6 ferritin, heavy polypeptide 1 2001-06-22 2016-05-20 2016-10-05 2495 ENSG00000167996 OTTHUMG00000166217 uc001nsu.3 NM_002032 CCDS41655 P02794 3020541 MGI:95588 RGD:2635 FTH1 134770 159608 +HGNC:3979 FTH1P1 ferritin heavy chain 1 pseudogene 1 pseudogene pseudogene Approved 1p34.3 01p34.3 FTHL1 "ferritin, heavy polypeptide-like 1|ferritin, heavy polypeptide 1 pseudogene" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2496 ENSG00000232273 OTTHUMG00000004219 NG_004768 3862645 +HGNC:3989 FTH1P2 ferritin heavy chain 1 pseudogene 2 pseudogene pseudogene Approved 1q42.13 01q42.13 FTHL2 "ferritin, heavy polypeptide-like 2|ferritin, heavy polypeptide 1 pseudogene 2" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2497 ENSG00000234975 OTTHUMG00000037918 NR_002200 3862645 PGOHUM00000245244 +HGNC:3990 FTH1P3 ferritin heavy chain 1 pseudogene 3 pseudogene pseudogene Approved 2p23.3 02p23.3 FTHL3 "ferritin, heavy polypeptide-like 3|ferritin, heavy polypeptide 1 pseudogene 3" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2498 ENSG00000213453 OTTHUMG00000151928 NR_002201 3862645 +HGNC:3991 FTH1P4 ferritin heavy chain 1 pseudogene 4 pseudogene pseudogene Approved 3q21.3 03q21.3 FTHL4 "ferritin, heavy polypeptide-like 4|ferritin, heavy polypeptide 1 pseudogene 4" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2499 ENSG00000242992 OTTHUMG00000159811 NG_004769 3862645 +HGNC:3996 FTH1P5 ferritin heavy chain 1 pseudogene 5 pseudogene pseudogene Approved 6p12.3 06p12.3 "FTHP1|FTHL5" "ferritin, heavy polypeptide pseudogene 1|ferritin, heavy polypeptide-like 5|ferritin, heavy polypeptide 1 pseudogene 5" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2509 ENSG00000230204 OTTHUMG00000014835 J04755 NG_005639 2307464 +HGNC:39088 FTH1P6 ferritin heavy chain 1 pseudogene 6 pseudogene pseudogene Approved 2p16.2 02p16.2 ferritin, heavy polypeptide 1 pseudogene 6 2010-10-14 2016-05-20 2016-10-05 106481787 ENSG00000233083 OTTHUMG00000151801 NG_043893 PGOHUM00000298436 +HGNC:3994 FTH1P7 ferritin heavy chain 1 pseudogene 7 pseudogene pseudogene Approved 13q12.12 13q12.12 FTHL7 "ferritin, heavy polypeptide-like 7|ferritin, heavy polypeptide 1 pseudogene 7" 2001-06-22 2010-10-13 2016-05-20 2016-10-05 2500 ENSG00000232187 OTTHUMG00000016551 NR_002202 3862645 +HGNC:3995 FTH1P8 ferritin heavy chain 1 pseudogene 8 pseudogene pseudogene Approved Xq28 Xq28 FTHL8 "ferritin, heavy polypeptide-like 8|ferritin, heavy polypeptide 1 pseudogene 8" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2501 ENSG00000219507 OTTHUMG00000022607 NR_002203 3862645 +HGNC:39089 FTH1P9 ferritin heavy chain 1 pseudogene 9 pseudogene pseudogene Approved 5q14.2 05q14.2 ferritin, heavy polypeptide 1 pseudogene 9 2010-10-14 2016-05-20 2016-05-20 106478936 ENSG00000251395 OTTHUMG00000162568 NG_043625 PGOHUM00000235682 +HGNC:3980 FTH1P10 ferritin heavy chain 1 pseudogene 10 pseudogene pseudogene Approved 5p15.1 05p15.1 FTHL10 "ferritin, heavy polypeptide-like 10|ferritin, heavy polypeptide 1 pseudogene 10" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2502 ENSG00000223361 OTTHUMG00000161872 NG_003028 "3862645|2821803" +HGNC:3981 FTH1P11 ferritin heavy chain 1 pseudogene 11 pseudogene pseudogene Approved 8q21.13 08q21.13 FTHL11 "ferritin, heavy polypeptide-like 11|ferritin, heavy polypeptide 1 pseudogene 11" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2503 ENSG00000237264 OTTHUMG00000164678 NR_002204 3862645 PGOHUM00000249405 +HGNC:3982 FTH1P12 ferritin heavy chain 1 pseudogene 12 pseudogene pseudogene Approved 9p22.3 09p22.3 FTHL12 "ferritin, heavy polypeptide-like 12|ferritin, heavy polypeptide 1 pseudogene 12" 2001-06-22 2010-10-13 2016-05-20 2016-05-20 2504 ENSG00000213362 OTTHUMG00000019586 NR_002205 3862645 +HGNC:3983 FTH1P13 ferritin heavy chain 1 pseudogene 13 pseudogene pseudogene Approved 14q23.3 14q23.3 "FTHP3|FTHL13" "ferritin, heavy polypeptide pseudogene 3|ferritin, heavy polypeptide-like 13|ferritin, heavy polypeptide 1 pseudogene 13" 1986-01-01 2010-10-13 2016-05-20 2016-05-20 646362 U26556 NG_007334 "2821803|3862645" PGOHUM00000247834 +HGNC:39090 FTH1P14 ferritin heavy chain 1 pseudogene 14 pseudogene pseudogene Approved Xp21.1 Xp21.1 ferritin, heavy polypeptide 1 pseudogene 14 2010-10-14 2016-05-20 2016-05-20 139431 ENSG00000185638 OTTHUMG00000021340 NG_023176 FTH1P14 +HGNC:3985 FTH1P15 ferritin heavy chain 1 pseudogene 15 pseudogene pseudogene Approved 6p12.1 06p12.1 FTHL15 "ferritin, heavy polypeptide-like 15|ferritin, heavy polypeptide 1 pseudogene 15" 1990-05-08 2010-10-13 2016-05-20 2016-05-20 2507 ENSG00000218980 OTTHUMG00000014912 U09960 NG_007335 8045562 PGOHUM00000258218 +HGNC:3986 FTH1P16 ferritin heavy chain 1 pseudogene 16 pseudogene pseudogene Approved 11q14.1 11q14.1 "FTH2|FTHL16" "ferritin, heavy polypeptide-like 16|ferritin, heavy polypeptide 1 pseudogene 16" 1991-09-11 2010-10-13 2016-05-20 2016-05-20 2508 ENSG00000227376 OTTHUMG00000150432 X03486 XR_017932 1395714 +HGNC:3988 FTH1P18 ferritin heavy chain 1 pseudogene 18 other unknown Approved Xp21.1 Xp21.1 FTHL18 "ferritin, heavy polypeptide-like 18|ferritin, heavy polypeptide 1 pseudogene 18" 2000-05-31 2010-10-13 2016-05-20 2016-05-20 441490 ENSG00000243048 OTTHUMG00000033090 AA383232 NG_008265 RGD:1594594 PGOHUM00000241234 +HGNC:33525 FTH1P19 ferritin heavy chain 1 pseudogene 19 pseudogene pseudogene Approved Xp21.1 Xp21.1 FTHL19 "ferritin, heavy polypeptide-like 19|ferritin, heavy polypeptide 1 pseudogene 19" 2007-07-17 2010-10-13 2016-05-20 2016-05-20 389844 ENSG00000219186 OTTHUMG00000033179 XM_372202 P0C7X4 RGD:1591840 FTH1P19 PGOHUM00000241709 +HGNC:37639 FTH1P20 ferritin heavy chain 1 pseudogene 20 pseudogene pseudogene Approved 2q31.3 02q31.3 FTHL20 "ferritin, heavy polypeptide-like 20|ferritin, heavy polypeptide 1 pseudogene 20" 2009-12-03 2010-10-13 2016-05-20 2016-05-20 729009 ENSG00000226564 OTTHUMG00000154191 NG_023542 +HGNC:3997 FTH1P21 ferritin heavy chain 1 pseudogene 21 pseudogene pseudogene Approved 4q32.1 04q32.1 "FTHP2|FTHL21" "ferritin, heavy polypeptide pseudogene 2|ferritin, heavy polypeptide-like 21|ferritin, heavy polypeptide 1 pseudogene 21" 1993-10-28 2010-10-13 2016-05-20 2016-05-20 2510 ENSG00000249013 OTTHUMG00000161779 U09962 NG_001121 7612929 PGOHUM00000246113 +HGNC:37640 FTH1P22 ferritin heavy chain 1 pseudogene 22 pseudogene pseudogene Approved 1p13.1 01p13.1 FTHL22 "ferritin, heavy polypeptide-like 22|ferritin, heavy polypeptide 1 pseudogene 22" 2009-12-03 2010-10-13 2016-05-20 2016-05-20 100462772 ENSG00000225079 OTTHUMG00000022797 NG_022736 PGOHUM00000244158 +HGNC:37641 FTH1P23 ferritin heavy chain 1 pseudogene 23 pseudogene pseudogene Approved 3p13 03p13 FTHL23 "ferritin, heavy polypeptide-like 23|ferritin, heavy polypeptide 1 pseudogene 23" 2009-12-03 2010-10-13 2016-05-20 2016-05-20 100420300 ENSG00000242960 OTTHUMG00000158783 NG_025708 PGOHUM00000238065 +HGNC:37642 FTH1P24 ferritin heavy chain 1 pseudogene 24 pseudogene pseudogene Approved 4q31.1 04q31.1 FTHL24 "ferritin, heavy polypeptide-like 24|ferritin, heavy polypeptide 1 pseudogene 24" 2009-12-03 2010-10-13 2016-05-20 2016-05-20 100462797 ENSG00000249302 OTTHUMG00000161273 NG_022082 PGOHUM00000246088 +HGNC:37643 FTH1P25 ferritin heavy chain 1 pseudogene 25 pseudogene pseudogene Approved 1q25.3 01q25.3 FTHL25 "ferritin, heavy polypeptide-like 25|ferritin, heavy polypeptide 1 pseudogene 25" 2009-12-03 2010-10-13 2016-05-20 2016-05-20 100462799 ENSG00000232792 OTTHUMG00000035392 NG_022745 +HGNC:37644 FTH1P26 ferritin heavy chain 1 pseudogene 26 pseudogene pseudogene Approved 6q23.2 06q23.2 FTHL26 "ferritin, heavy polypeptide-like 26|ferritin, heavy polypeptide 1 pseudogene 26" 2009-12-03 2010-10-13 2016-05-20 2016-05-20 100420303 ENSG00000218213 OTTHUMG00000015605 NG_028813 +HGNC:39091 FTH1P27 ferritin heavy chain 1 pseudogene 27 pseudogene pseudogene Approved Xp21.1 Xp21.1 ferritin, heavy polypeptide 1 pseudogene 27 2010-10-14 2016-05-20 2016-05-20 100270709 ENSG00000234355 OTTHUMG00000033173 NG_009568 PGOHUM00000241710 +HGNC:3984 FTHL14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:3987 FTHL17 ferritin heavy chain like 17 protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 CT38 cancer/testis antigen 38 ferritin, heavy polypeptide-like 17 2000-05-31 2016-05-20 2016-05-20 53940 ENSG00000132446 OTTHUMG00000021332 uc004dcl.1 AF285592 NM_031894 CCDS14227 Q9BXU8 25749565 MGI:1919246 RGD:1584678 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FTHL17 FTHL17 300308 +HGNC:3999 FTL ferritin light chain protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "MGC71996|NBIA3" "ferritin light polypeptide-like 3|L apoferritin|ferritin L subunit|ferritin light chain|ferritin L-chain|neurodegeneration with brain iron accumulation 3" ferritin, light polypeptide 2001-06-22 2016-06-22 2016-06-22 2512 ENSG00000087086 OTTHUMG00000183332 uc002plo.4 AY207005 NM_000146 CCDS33070 P02792 "3000916|9526618" MGI:95589 RGD:61813 FTL 134790 121953 +HGNC:16547 FTLP1 ferritin light chain pseudogene 1 pseudogene pseudogene Approved 20q13.12 20q13.12 bA465L10.3 FTLP "ferritin, light polypeptide pseudogene|ferritin, light polypeptide pseudogene 1" 2001-09-17 2010-03-12 2016-06-22 2016-06-22 170514 ENSG00000235525 OTTHUMG00000032630 AL162458 NG_001037 PGOHUM00000247549 +HGNC:4001 FTLP2 ferritin light chain pseudogene 2 pseudogene pseudogene Approved Xp21.2 Xp21.2 FTLL2 "ferritin, light polypeptide-like 2|ferritin, light polypeptide-like 2 pseudogene|ferritin, light polypeptide pseudogene 2" 2001-06-22 2010-03-12 2016-06-22 2016-06-22 392437 ENSG00000232368 OTTHUMG00000021327 XR_017149 FTLP2 PGOHUM00000241690 +HGNC:4000 FTLP3 ferritin light chain pseudogene 3 pseudogene pseudogene Approved 20p13 20p13 dJ681N20.2 FTLL1 "ferritin, light polypeptide-like 1|ferritin, light polypeptide pseudogene 3" 2001-06-22 2010-03-12 2016-06-22 2016-06-22 284764 ENSG00000226608 OTTHUMG00000031769 NG_002715 "3000916|2821803" +HGNC:37952 FTLP4 ferritin light chain pseudogene 4 pseudogene pseudogene Approved 9p21.1 09p21.1 ferritin, light polypeptide pseudogene 4 2010-03-12 2016-06-22 2016-06-22 100129251 ENSG00000214020 OTTHUMG00000019732 NG_023019 PGOHUM00000236426 +HGNC:37953 FTLP5 ferritin light chain pseudogene 5 pseudogene pseudogene Approved 19p13.3 19p13.3 ferritin, light polypeptide pseudogene 5 2010-03-12 2016-06-22 2016-07-25 100131661 ENSG00000266989 OTTHUMG00000180809 NG_022975 PGOHUM00000295166 +HGNC:37954 FTLP6 ferritin light chain pseudogene 6 pseudogene pseudogene Approved 11q13.2 11q13.2 ferritin, light polypeptide pseudogene 6 2010-03-12 2016-06-22 2016-06-22 100462788 ENSG00000254984 OTTHUMG00000167166 NG_021790 PGOHUM00000242333 +HGNC:37955 FTLP7 ferritin light chain pseudogene 7 pseudogene pseudogene Approved 11q23.3 11q23.3 ferritin, light polypeptide pseudogene 7 2010-03-12 2016-06-22 2016-06-22 441623 NG_021805 PGOHUM00000242494 +HGNC:37956 FTLP8 ferritin light chain pseudogene 8 pseudogene pseudogene Approved 13q32.2 13q32.2 ferritin, light polypeptide pseudogene 8 2010-03-12 2016-06-22 2016-06-22 100462790 ENSG00000232217 OTTHUMG00000017242 NG_021963 PGOHUM00000248472 +HGNC:37958 FTLP9 ferritin light chain pseudogene 9 pseudogene pseudogene Approved 4q21.1 04q21.1 ferritin, light polypeptide pseudogene 9 2010-03-12 2016-06-22 2016-06-22 100462780 NG_022015 PGOHUM00000245599 +HGNC:37959 FTLP10 ferritin light chain pseudogene 10 pseudogene pseudogene Approved 4q13.2 04q13.2 ferritin, light polypeptide pseudogene 10 2010-03-12 2016-06-22 2016-06-22 100130017 ENSG00000250426 OTTHUMG00000160804 NR_015446 PGOHUM00000245940 +HGNC:37960 FTLP11 ferritin light chain pseudogene 11 pseudogene pseudogene Approved 15q13.1 15q13.1 ferritin, light polypeptide pseudogene 11 2010-03-12 2016-06-22 2016-06-22 100289501 NG_023157 PGOHUM00000246704 +HGNC:37961 FTLP12 ferritin light chain pseudogene 12 pseudogene pseudogene Approved 17p11.2 17p11.2 ferritin, light polypeptide pseudogene 12 2010-03-12 2016-06-22 2016-06-22 100462792 ENSG00000265095 OTTHUMG00000179839 NG_022455 PGOHUM00000237239 +HGNC:37963 FTLP13 ferritin light chain pseudogene 13 pseudogene pseudogene Approved 17p11.2 17p11.2 ferritin, light polypeptide pseudogene 13 2010-03-12 2016-06-22 2016-06-22 100462793 ENSG00000263725 OTTHUMG00000179060 NG_022463 PGOHUM00000237307 +HGNC:37964 FTLP14 ferritin light chain pseudogene 14 pseudogene pseudogene Approved 16q22.1 16q22.1 ferritin, light polypeptide pseudogene 14 2010-03-12 2016-06-22 2016-06-22 100462794 ENSG00000260459 OTTHUMG00000176777 NG_022524 +HGNC:37965 FTLP15 ferritin light chain pseudogene 15 pseudogene pseudogene Approved 7p12.3 07p12.3 ferritin, light polypeptide pseudogene 15 2010-03-12 2016-06-22 2016-06-22 442304 ENSG00000233952 OTTHUMG00000154754 NG_022533 +HGNC:37966 FTLP16 ferritin light chain pseudogene 16 pseudogene pseudogene Approved Xp11.4 Xp11.4 ferritin, light polypeptide pseudogene 16 2010-03-12 2016-06-22 2016-06-22 100420158 ENSG00000229735 OTTHUMG00000024087 NG_022590 PGOHUM00000241238 +HGNC:37967 FTLP17 ferritin light chain pseudogene 17 pseudogene pseudogene Approved 1p21.1 01p21.1 ferritin, light polypeptide pseudogene 17 2010-03-12 2016-06-22 2016-06-22 642337 ENSG00000228347 OTTHUMG00000011049 NG_023171 PGOHUM00000244126 +HGNC:37968 FTLP18 ferritin light chain pseudogene 18 pseudogene pseudogene Approved 1p34.3 01p34.3 ferritin, light polypeptide pseudogene 18 2010-03-12 2016-06-22 2016-06-22 100462786 ENSG00000230214 OTTHUMG00000004186 NG_022775 PGOHUM00000244673 +HGNC:37969 FTLP19 ferritin light chain pseudogene 19 pseudogene pseudogene Approved 10p13 10p13 ferritin, light polypeptide pseudogene 19 2010-03-12 2016-06-22 2016-06-22 100873960 ENSG00000237913 OTTHUMG00000017735 NG_032200 +HGNC:17345 FTMT ferritin mitochondrial protein-coding gene gene with protein product Approved 5q23.1 05q23.1 MtF 2004-06-25 2015-09-11 94033 ENSG00000181867 OTTHUMG00000128912 uc003kss.4 BC034419 NM_177478 CCDS4128 Q8N4E7 11323407 MGI:1914884 RGD:1306563 FTMT 608847 +HGNC:24678 FTO FTO, alpha-ketoglutarate dependent dioxygenase protein-coding gene gene with protein product Approved 16q12.2 16q12.2 "KIAA1752|MGC5149|ALKBH9" "alkB homolog 9|alpha-ketoglutarate-dependent dioxygenase" fat mass and obesity associated Alkylation repair homologs 401 2007-04-12 2016-09-13 2016-09-13 79068 ENSG00000140718 OTTHUMG00000158780 uc002ehr.4 BC003583 NM_001080432 CCDS32448 Q9C0B1 "17434869|17991826|22002720" MGI:1347093 RGD:1305121 FTO 610966 212927 1.14.11.- +HGNC:43758 FTO-IT1 FTO intronic transcript 1 non-coding RNA RNA, long non-coding Approved 16q12.2 16q12.2 FTO intronic transcript 1 (non-protein coding) 2012-02-22 2015-02-25 2015-02-25 100505692 OTTHUMG00000173131 uc032eac.2 CA450585 NR_103838 +HGNC:43759 FTOP1 fat mass and obesity associated pseudogene 1 pseudogene pseudogene Approved 2p21 02p21 2012-02-22 2013-11-15 100874223 ENSG00000226491 OTTHUMG00000152364 NG_032565 PGOHUM00000240025 +HGNC:13254 FTSJ1 FtsJ RNA methyltransferase homolog 1 (E. coli) protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "JM23|CDLIV|SPB1|TRM7|TRMT7" tRNA methyltransferase 7 homolog (S. cerevisiae) "MRX9|MRX44" "mental retardation, X-linked 9|mental retardation, X-linked 44" X-linked mental retardation 103 2001-11-09 2012-06-12 2015-08-25 24140 ENSG00000068438 OTTHUMG00000024118 uc004djo.3 AJ005892 XM_011543893 "CCDS14294|CCDS14295|CCDS75972" Q9UET6 "15342698|15162322" MGI:1859648 RGD:1561061 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FTSJ1 FTSJ1 300499 121955 +HGNC:17136 FTSJ3 FtsJ homolog 3 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 SPB1 SPB1 RNA methyltransferase homolog (S. cerevisiae) FtsJ homolog 3 (E. coli) 2001-11-09 2016-03-30 2016-03-30 117246 ENSG00000108592 OTTHUMG00000179012 uc002jca.3 AF327355 NM_017647 CCDS11644 Q8IY81 MGI:1860295 RGD:1307110 FTSJ3 +HGNC:37190 FTX FTX transcript, XIST regulator (non-protein coding) non-coding RNA RNA, long non-coding Approved Xq13.2 Xq13.2 "LINC00182|FLJ33139" five prime to XIST "NCRNA00182|MIR374AHG" "non-protein coding RNA 182|mir-374a-545 cluster host gene (non-protein coding)" Long non-coding RNAs 788 2009-08-18 2011-04-21 2011-04-21 2013-12-18 100302692 ENSG00000230590 OTTHUMG00000021850 uc064zzg.1 AK057701 NR_028379 "12045143|21254562|21118898" MGI:1926128 RGD:1564124 300936 +HGNC:4004 FUBP1 far upstream element binding protein 1 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 FBP FUSE binding protein 1 FUBP far upstream element (FUSE) binding protein 1 1999-01-06 2016-02-04 2016-10-12 8880 ENSG00000162613 OTTHUMG00000040799 uc001dii.4 U05040 NM_003902 CCDS683 Q96AE4 8125259 MGI:1196294 RGD:1591892 LRG_995|http://www.lrg-sequence.org/LRG/LRG_995 FUBP1 603444 +HGNC:4005 FUBP3 far upstream element binding protein 3 protein-coding gene gene with protein product Approved 9q34.11-q34.12 09q34.11-q34.12 FBP3 far upstream element (FUSE) binding protein 3 1999-07-22 2016-03-15 2016-10-11 8939 ENSG00000107164 OTTHUMG00000020809 uc004bzr.2 U69127 NM_003934 CCDS43893 Q96I24 8940189 MGI:2443699 RGD:1307004 FUBP3 603536 +HGNC:4006 FUCA1 fucosidase, alpha-L- 1, tissue protein-coding gene gene with protein product Approved 1p36.11 01p36.11 2001-06-22 2016-10-05 2517 ENSG00000179163 OTTHUMG00000002965 uc001bie.5 BC017338 NM_000147 CCDS244 P04066 2803312 MGI:95593 RGD:2636 FUCA1 612280 121963 3.2.1.51 +HGNC:4007 FUCA1P1 fucosidase, alpha-L- 1, tissue pseudogene 1 pseudogene pseudogene Approved 2q31.1 02q31.1 FUCA1P fucosidase, alpha-L- 1, tissue pseudogene 2001-06-22 2010-03-12 2010-03-12 2016-10-05 2518 ENSG00000237053 OTTHUMG00000154420 M80816 NG_001122 1977129 PGOHUM00000240438 +HGNC:4008 FUCA2 fucosidase, alpha-L- 2, plasma protein-coding gene gene with protein product Approved 6q24.2 06q24.2 "MGC1314|dJ20N2.5" 2001-06-22 2016-10-05 2519 ENSG00000001036 OTTHUMG00000015728 uc003qjm.4 BC003060 NM_032020 CCDS5200 Q9BTY2 6590153 MGI:1914098 RGD:1303053 FUCA2 136820 3.2.1.51 +HGNC:29500 FUK fucokinase protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ39408 L-fucose kinase 2004-01-30 2014-11-19 197258 ENSG00000157353 OTTHUMG00000074085 uc002eyy.4 NM_145059 CCDS10891 Q8N0W3 12056818 MGI:1916071 RGD:1307000 FUK 608675 2.7.1.52 +HGNC:28746 FUNDC1 FUN14 domain containing 1 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 MGC51029 2004-03-16 2016-10-05 139341 ENSG00000069509 OTTHUMG00000021399 uc004dgc.4 BC042813 NM_173794 CCDS14263 Q8IVP5 12477932 MGI:1919268 RGD:1563372 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FUNDC1 FUNDC1 300871 +HGNC:24925 FUNDC2 FUN14 domain containing 2 protein-coding gene gene with protein product Approved Xq28 Xq28 "HCBP6|DC44" 2004-08-09 2015-09-11 65991 ENSG00000165775 OTTHUMG00000013504 uc004fmw.4 AF267862 NM_023934 CCDS14763 Q9BWH2 12477932 MGI:1914641 RGD:1560916 FUNDC2 +HGNC:17253 FUNDC2P1 FUN14 domain containing 2 pseudogene 1 pseudogene pseudogene Approved 5q13.2 05q13.2 FUNDC2P FUN14 domain containing 2 pseudogene 2006-11-20 2010-03-12 2010-03-12 2016-10-05 220793 ENSG00000255883 OTTHUMG00000186591 NG_005087 FUNDC2P1 +HGNC:17247 FUNDC2P2 FUN14 domain containing 2 pseudogene 2 pseudogene pseudogene Approved 2p11.2 02p11.2 2010-03-12 2014-11-19 388965 ENSG00000182814 OTTHUMG00000152875 NR_003663 PGOHUM00000240702 +HGNC:37970 FUNDC2P3 FUN14 domain containing 2 pseudogene 3 pseudogene pseudogene Approved 6q24.3 06q24.3 2010-03-16 2014-11-19 644625 ENSG00000187103 OTTHUMG00000015751 NG_022375 PGOHUM00000243808 +HGNC:37971 FUNDC2P4 FUN14 domain containing 2 pseudogene 4 pseudogene pseudogene Approved 22q13.1 22q13.1 2010-03-16 2014-11-19 100127979 ENSG00000227009 OTTHUMG00000151185 NG_022878 PGOHUM00000246588 +HGNC:24733 FUOM fucose mutarotase protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "FLJ26016|FucU|FucM" C10orf125 chromosome 10 open reading frame 125 2004-05-27 2012-07-10 2012-07-10 2014-11-19 282969 ENSG00000148803 OTTHUMG00000019315 uc001lmt.3 AK129527 NM_198472 "CCDS7680|CCDS44499|CCDS76364" A2VDF0 17602138 MGI:1916314 RGD:1311186 5.1.3.n2 +HGNC:8568 FURIN furin, paired basic amino acid cleaving enzyme protein-coding gene gene with protein product Approved 15q26.1 15q26.1 SPC1 "PCSK3|FUR|PACE" "paired basic amino acid cleaving enzyme (furin, membrane associated receptor protein)|furin (paired basic amino acid cleaving enzyme)" Proprotein convertase subtilisin/kexin family 973 1991-08-08 2002-12-06 2016-02-22 2016-02-22 5045 ENSG00000140564 OTTHUMG00000149831 uc002bpu.2 X17094 NM_002569 CCDS10364 P09958 "2251280|1741956" MGI:97513 RGD:3274 FURIN 136950 S08.071 objectId:2366 +HGNC:4010 FUS FUS RNA binding protein protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "TLS|FUS1|hnRNP-P2|HNRNPP2" "heterogeneous nuclear ribonucleoprotein P2|translocated in liposarcoma" ALS6 "fusion, derived from t(12;16) malignant liposarcoma|amyotrophic lateral sclerosis 6|fusion (involved in t(12;16) in malignant liposarcoma)|fused in sarcoma" "Zinc fingers RANBP2-type |RNA binding motif containing" "89|725" 1992-11-26 2014-05-09 2016-10-12 2521 ENSG00000089280 OTTHUMG00000132395 uc002ebf.3 AF071213 NM_004960 "CCDS10707|CCDS58454" P35637 "2372777|7503811|19251628|19251627" MGI:1353633 RGD:1308864 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_655|http://www.lrg-sequence.org/LRG/LRG_655" FUS 137070 159615 +HGNC:4011 FUSE polykaryocytosis promoter phenotype phenotype only Approved 10 10 2001-06-22 2012-10-02 2522 174750 +HGNC:4012 FUT1 fucosyltransferase 1 (H blood group) protein-coding gene gene with protein product Approved 19q13.33 19q13.33 galactoside 2-alpha-L-fucosyltransferase "H|HSC" "fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase, Bombay phenotype included)|fucosyltransferase 1 (galactoside 2-alpha-L-fucosyltransferase)" "Fucosyltransferases|Blood group antigens" "434|454" 1989-06-06 2015-11-23 2016-10-12 2523 ENSG00000174951 OTTHUMG00000183325 uc002pkk.3 NM_000148 CCDS12733 P19526 MGI:109375 RGD:2638 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_810|http://www.lrg-sequence.org/LRG/LRG_810" FUT1 211100 2.4.1.69 +HGNC:4013 FUT2 fucosyltransferase 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "sej|Se2|SEC2" "alpha (1,2) fucosyltransferase|galactoside 2-alpha-L-fucosyltransferase 2|GDP-L-fucose:beta-D-galactoside 2-alpha-L-fucosyltransferase 2|alpha(1,2)FT2|secretor factor|secretor blood group alpha-2-fucosyltransferase" SE fucosyltransferase 2 (secretor status included) Fucosyltransferases 434 1989-06-06 2015-11-23 2016-10-12 2524 ENSG00000176920 OTTHUMG00000164427 uc010emc.4 NM_000511 CCDS33069 Q10981 1763885 MGI:109374 RGD:2639 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_811|http://www.lrg-sequence.org/LRG/LRG_811" FUT2 182100 +HGNC:4014 FUT3 fucosyltransferase 3 (Lewis blood group) protein-coding gene gene with protein product Approved 19p13.3 19p13.3 CD174 galactoside 3(4)-L-fucosyltransferase LE fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) "Fucosyltransferases|Blood group antigens|CD molecules" "434|454|471" 1993-04-08 2015-11-23 2016-10-12 2525 ENSG00000171124 OTTHUMG00000180614 uc002mdm.3 NM_000149 CCDS12153 P21217 "1977660|1740457" "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_800|http://www.lrg-sequence.org/LRG/LRG_800" FUT3 111100 CD174 2.4.1.65 +HGNC:4015 FUT4 fucosyltransferase 4 protein-coding gene gene with protein product Approved 11q21 11q21 FUC-TIV "galactoside 3-L-fucosyltransferase|alpha (1,3) fucosyltransferase, myeloid-specific" "CD15|FCT3A|ELFT" ELAM ligand fucosyltransferase "Fucosyltransferases|CD molecules" "434|471" 1992-04-06 2015-11-23 2015-11-23 2526 ENSG00000196371 OTTHUMG00000167795 uc001pez.4 NM_002033 CCDS8301 P22083 1702034 MGI:95594 RGD:619954 FUT4 104230 CD15 +HGNC:4016 FUT5 fucosyltransferase 5 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FUC-TV alpha (1,3) fucosyltransferase Fucosyltransferases 434 1992-09-17 2015-11-23 2015-11-23 2527 ENSG00000130383 OTTHUMG00000180616 uc002mdo.5 NM_002034 CCDS12154 Q11128 1740457 FUT5 136835 2.4.1.65 +HGNC:4017 FUT6 fucosyltransferase 6 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "FT1A|FCT3A|FucT-VI|FLJ40754" "alpha-(1,3)-fucosyltransferase|galactoside 3-L-fucosyltransferase" Fucosyltransferases 434 1993-04-15 2015-11-23 2015-11-23 2528 ENSG00000156413 OTTHUMG00000167335 uc002mdg.1 NM_000150 CCDS12152 P51993 "1520296|7782074" RGD:1588473 Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home FUT6 136836 2.4.1.65 +HGNC:4018 FUT7 fucosyltransferase 7 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 alpha (1,3) fucosyltransferase fucosyltransferase 7 (alpha (1,3) fucosyltransferase) Fucosyltransferases 434 1994-12-14 2016-04-05 2016-04-05 2529 ENSG00000180549 OTTHUMG00000020964 uc004ckq.3 "X78031|AB012668" NM_004479 CCDS7022 Q11130 "8207002|8182079" MGI:107692 RGD:735019 Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home FUT7 602030 +HGNC:4019 FUT8 fucosyltransferase 8 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 alpha (1,6) fucosyltransferase fucosyltransferase 8 (alpha (1,6) fucosyltransferase) Fucosyltransferases 434 1997-12-23 2016-04-05 2016-10-05 2530 ENSG00000033170 OTTHUMG00000142818 uc001xin.3 AB049740 NM_004480 "CCDS9775|CCDS9776" Q9BYC5 9368041 MGI:1858901 RGD:1303096 FUT8 602589 +HGNC:44294 FUT8-AS1 FUT8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q23.3 14q23.3 FUT8 antisense RNA 1 (non-protein coding) 2012-08-08 2012-08-15 2012-10-12 645431 ENSG00000276116 OTTHUMG00000186893 uc059cmm.1 "AK094893|BX098734|BX161387" NR_024334 +HGNC:4020 FUT9 fucosyltransferase 9 protein-coding gene gene with protein product Approved 6q16.1 06q16.1 Fuc-TIX alpha (1,3) fucosyltransferase fucosyltransferase 9 (alpha (1,3) fucosyltransferase) Fucosyltransferases 434 1999-07-07 2016-04-05 2016-10-05 10690 ENSG00000172461 OTTHUMG00000015236 uc003pop.5 AB023021 NM_006581 CCDS5033 Q9Y231 "10386598|10575236" MGI:1330859 RGD:619955 FUT9 606865 +HGNC:19234 FUT10 fucosyltransferase 10 protein-coding gene gene with protein product Approved 8p12 08p12 alpha (1,3) fucosyltransferase fucosyltransferase 10 (alpha (1,3) fucosyltransferase) Fucosyltransferases 434 2003-10-15 2016-04-05 2016-04-05 84750 ENSG00000172728 OTTHUMG00000163954 uc003xje.4 AJ512465 NM_032664 CCDS6088 Q6P4F1 MGI:2384748 RGD:1359164 FUT10 616931 +HGNC:19233 FUT11 fucosyltransferase 11 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 MGC33202 alpha (1,3) fucosyltransferase fucosyltransferase 11 (alpha (1,3) fucosyltransferase) Fucosyltransferases 434 2003-10-15 2016-04-05 2016-10-05 170384 ENSG00000196968 OTTHUMG00000018483 uc001jva.4 BC036037 NM_173540 "CCDS7333|CCDS60558" Q495W5 "11698403|24318988" MGI:1920318 RGD:628731 FUT11 616932 +HGNC:26219 FUZ fuzzy planar cell polarity protein protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "FLJ22688|Fy" fuzzy homolog (Drosophila) 2006-06-21 2013-03-05 2015-07-22 80199 ENSG00000010361 OTTHUMG00000167281 uc002ppq.4 BC016793 NM_025129 "CCDS12781|CCDS54293" Q9BT04 21761479 MGI:1917550 RGD:1310608 FUZ 610622 285396 +HGNC:3951 FXN frataxin protein-coding gene gene with protein product Approved 9q21.11 09q21.11 "FA|FARR|X25|CyaY" FRDA Friedreich ataxia 2001-06-22 2004-08-19 2004-08-16 2016-10-12 2395 ENSG00000165060 OTTHUMG00000019977 uc004aha.3 U43752 NM_000144 "CCDS6626|CCDS43834|CCDS55313" Q16595 "8596916|8841185" MGI:1096879 RGD:1565754 LRG_339|http://www.lrg-sequence.org/LRG/LRG_339 FXN 606829 121965 +HGNC:20012 FXNP1 frataxin pseudogene 1 pseudogene pseudogene Approved 14q24.3 14q24.3 FRDAP Friedreich ataxia pseudogene 2003-01-13 2015-03-19 2015-03-19 2015-03-19 122942 ENSG00000258421 OTTHUMG00000171521 NG_002485 PGOHUM00000292419 +HGNC:51607 FXNP2 frataxin pseuodgene 2 pseudogene pseudogene Approved 9q33.3 09q33.3 2015-03-19 2015-03-19 100418706 ENSG00000177736 OTTHUMG00000020666 NG_023862 PGOHUM00000304052 +HGNC:4023 FXR1 FMR1 autosomal homolog 1 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 fragile X mental retardation, autosomal homolog 1 1999-04-16 2016-02-17 2016-10-05 8087 ENSG00000114416 OTTHUMG00000158138 uc003fkq.4 M67468 XM_005247813 "CCDS3238|CCDS33894|CCDS46965" P51114 "7781595|9642279" MGI:104860 RGD:1311733 FXR1 600819 +HGNC:4024 FXR2 FMR1 autosomal homolog 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 FMR1L2 fragile X mental retardation, autosomal homolog 2 1999-05-17 2016-02-17 2016-10-12 9513 ENSG00000129245 OTTHUMG00000178237 uc002gia.3 U31501 NM_004860 CCDS45604 P51116 "7489725|9259278" MGI:1346074 RGD:1307011 LRG_285|http://www.lrg-sequence.org/LRG/LRG_285 FXR2 605339 +HGNC:4025 FXYD1 FXYD domain containing ion transport regulator 1 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 PLM phospholemman 1996-12-30 2008-08-01 2016-10-05 5348 ENSG00000266964 OTTHUMG00000182359 uc002nyc.5 NM_021902 CCDS12445 O00168 9169143 MGI:1889273 RGD:69306 FXYD1 602359 +HGNC:4026 FXYD2 FXYD domain containing ion transport regulator 2 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 MGC12372 "ATP1G1|HOMG2" hypomagnesemia 2, renal 1997-06-12 2003-02-28 2015-09-01 486 ENSG00000137731 OTTHUMG00000166990 uc001prj.2 AF241236 NM_021603 "CCDS8385|CCDS8386" P54710 "9048881|9915957" MGI:1195260 RGD:2173 FXYD2 601814 121972 objectId:2610 +HGNC:4027 FXYD3 FXYD domain containing ion transport regulator 3 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 MAT-8 PLML FXYD domain-containing ion transport regulator 3 1997-01-16 2002-01-14 2015-07-22 5349 ENSG00000089356 OTTHUMG00000184625 uc002nxv.4 X93036 NM_021910 "CCDS12442|CCDS12443|CCDS46048|CCDS46049|CCDS46050" Q14802 "7836447|10950925" MGI:107497 RGD:620825 FXYD3 604996 +HGNC:4028 FXYD4 FXYD domain containing ion transport regulator 4 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 CHIF FXYD domain-containing ion transport regulator 4 2000-05-23 2002-01-14 2015-09-11 53828 ENSG00000150201 OTTHUMG00000018027 uc057swf.1 NM_173160 CCDS7203 P59646 "10950925|12763854" MGI:1889005 RGD:70998 FXYD4 616926 +HGNC:4029 FXYD5 FXYD domain containing ion transport regulator 5 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 OIT2 dysadherin FXYD domain-containing ion transport regulator 5 2000-05-23 2002-01-14 2014-11-19 53827 ENSG00000089327 OTTHUMG00000048092 uc002nyg.3 AF161462 NM_014164 "CCDS12447|CCDS82328" Q96DB9 MGI:1201785 RGD:620827 FXYD5 606669 +HGNC:4030 FXYD6 FXYD domain containing ion transport regulator 6 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 phosphohippolin FXYD domain-containing ion transport regulator 6 2000-05-23 2002-01-14 2014-11-19 53826 ENSG00000137726 OTTHUMG00000166991 uc021qra.2 BC093040 NM_022003 CCDS8387 Q9H0Q3 10950925 MGI:1890226 RGD:69315 FXYD6 606683 +HGNC:39978 FXYD6-FXYD2 FXYD6-FXYD2 readthrough other readthrough Approved 11q23.3 11q23.3 2012-06-27 2014-11-19 100533181 ENSG00000255245 OTTHUMG00000166496 uc021qqy.2 NM_001204268 "CCDS58184|CCDS73400" +HGNC:4031 FXYD6P1 FXYD domain containing ion transport regulator 6 pseudogene 1 pseudogene pseudogene Approved 10q11.21 10q11.21 2000-05-23 2011-09-02 2015-07-22 100128934 ENSG00000270762 OTTHUMG00000184665 NG_017128 PGOHUM00000290124 +HGNC:4032 FXYD6P2 FXYD domain containing ion transport regulator 6 pseudogene 2 pseudogene pseudogene Approved 10p11.1 10p11.1 2000-05-23 2011-09-02 2016-10-05 100128512 ENSG00000235964 OTTHUMG00000017988 NG_017125 PGOHUM00000238415 +HGNC:31124 FXYD6P3 FXYD domain containing ion transport regulator 6 pseudogene 3 pseudogene pseudogene Approved Xq13.2 Xq13.2 FXYD8 FXYD domain containing ion transport regulator 8 2004-04-30 2011-09-02 2011-09-12 2014-11-18 406875 ENSG00000182707 OTTHUMG00000021837 NM_001099278 P58550 PGOHUM00000258438 +HGNC:4034 FXYD7 FXYD domain containing ion transport regulator 7 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FXYD domain-containing ion transport regulator 7 2000-05-23 2002-01-14 2015-07-22 53822 ENSG00000221946 OTTHUMG00000182348 uc002nye.2 AI929519 NM_022006 CCDS12446 P58549 MGI:1889006 RGD:620830 FXYD7 606684 +HGNC:4036 FYB FYN binding protein protein-coding gene gene with protein product Approved 5p13.1 05p13.1 "SLAP-130|FYB-120/130" FYN-binding protein (FYB-120/130) 1998-04-22 2010-05-04 2015-08-25 2533 ENSG00000082074 OTTHUMG00000162071 uc003jlu.4 U93049 NM_001465 "CCDS47200|CCDS54848|CCDS58945" O15117 "9115214|9207119" MGI:1346327 RGD:1563421 FYB 602731 +HGNC:14673 FYCO1 FYVE and coiled-coil domain containing 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "FLJ13335|ZFYVE7" "Zinc fingers FYVE-type|GOLD domain containing" "81|1062" 2001-03-06 2016-10-05 79443 ENSG00000163820 OTTHUMG00000133447 uc003cpb.6 AJ292348 NM_024513 CCDS2734 Q9BQS8 11896456 MGI:107277 RGD:1309069 FYCO1 607182 270347 +HGNC:4037 FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding gene gene with protein product Approved 6q21 06q21 "SYN|SLK|MGC45350" FYN oncogene related to SRC, FGR, YES SH2 domain containing 741 1988-08-19 2014-06-25 2015-09-01 2534 ENSG00000010810 OTTHUMG00000016305 uc003pvk.3 AK056699 XM_017010650 "CCDS5094|CCDS5095|CCDS5096" P06241 3526330 MGI:95602 RGD:2641 FYN 137025 objectId:2026 +HGNC:25407 FYTTD1 forty-two-three domain containing 1 protein-coding gene gene with protein product Approved 3q29 03q29 "DKFZp761B1514|UIF" UAP56-interacting factor 2005-01-24 2016-04-25 84248 ENSG00000122068 OTTHUMG00000155453 uc003fyi.3 AJ344094 NM_032288 "CCDS3329|CCDS43196" Q96QD9 19836239 MGI:1917955 RGD:1306899 FYTTD1 616933 +HGNC:38035 FYTTD1P1 forty-two-three domain containing 1 pseudogene 1 pseudogene pseudogene Approved 9q31.1 09q31.1 2010-03-23 2014-11-19 100128665 ENSG00000234502 OTTHUMG00000020379 NG_012326 PGOHUM00000236288 +HGNC:4038 FZD1 frizzled class receptor 1 protein-coding gene gene with protein product Approved 7q21.13 07q21.13 DKFZp564G072 "Wnt receptor|frizzled, Drosophila, homolog of, 1" "frizzled (Drosophila) homolog 1|frizzled homolog 1 (Drosophila)|frizzled 1, seven transmembrane spanning receptor|frizzled family receptor 1" G protein-coupled receptors, Class F frizzled 286 1998-09-17 2014-01-29 2016-10-05 8321 ENSG00000157240 OTTHUMG00000023046 uc003ula.4 AB017363 NM_003505 CCDS5620 Q9UP38 9813155 MGI:1196625 RGD:61916 FZD1 603408 objectId:229 +HGNC:4040 FZD2 frizzled class receptor 2 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "frizzled (Drosophila) homolog 2|frizzled homolog 2 (Drosophila)|frizzled 2, seven transmembrane spanning receptor|frizzled family receptor 2" G protein-coupled receptors, Class F frizzled 286 1995-07-18 2014-01-29 2015-09-11 2535 ENSG00000180340 OTTHUMG00000181819 uc002igx.3 L37882 NM_001466 CCDS11484 Q14332 "7558010|9813155" MGI:1888513 RGD:71012 FZD2 600667 434424 objectId:230 +HGNC:4041 FZD3 frizzled class receptor 3 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "frizzled (Drosophila) homolog 3|frizzled homolog 3 (Drosophila)|frizzled 3, seven transmembrane spanning receptor|frizzled family receptor 3" G protein-coupled receptors, Class F frizzled 286 1998-09-17 2014-01-29 2016-10-05 7976 ENSG00000104290 OTTHUMG00000102145 uc010lvb.4 AJ272427 NM_145866 CCDS6069 Q9NPG1 "10777673|10873558" MGI:108476 RGD:628814 FZD3 606143 objectId:231 +HGNC:4042 FZD4 frizzled class receptor 4 protein-coding gene gene with protein product Approved 11q14.2 11q14.2 CD344 EVR1 "frizzled (Drosophila) homolog 4|exudative vitreoretinopathy 1|frizzled homolog 4 (Drosophila)|frizzled 4, seven transmembrane spanning receptor|frizzled family receptor 4" "G protein-coupled receptors, Class F frizzled|CD molecules" "286|471" 1998-09-17 2014-01-29 2016-01-15 8322 ENSG00000174804 OTTHUMG00000167231 uc001pce.4 AB032417 NM_012193 CCDS8279 Q9ULV1 "10544037|15024691" MGI:108520 RGD:71017 FZD4 604579 121977 objectId:232 CD344 +HGNC:4043 FZD5 frizzled class receptor 5 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 "HFZ5|DKFZP434E2135" C2orf31 "frizzled (Drosophila) homolog 5|chromosome 2 open reading frame 31|frizzled homolog 5 (Drosophila)|frizzled 5, seven transmembrane spanning receptor|frizzled family receptor 5" G protein-coupled receptors, Class F frizzled 286 1998-09-17 2014-01-29 2015-09-11 7855 ENSG00000163251 OTTHUMG00000154790 uc002vcj.4 U43318 NM_003468 CCDS33366 Q13467 "8626800|11408929" MGI:108571 RGD:631406 FZD5 601723 464482 objectId:233 +HGNC:4044 FZD6 frizzled class receptor 6 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 Hfz6 "frizzled (Drosophila) homolog 6|frizzled homolog 6 (Drosophila)|frizzled 6, seven transmembrane spanning receptor|frizzled family receptor 6" G protein-coupled receptors, Class F frizzled 286 1998-09-17 2014-01-29 2016-10-05 8323 ENSG00000164930 OTTHUMG00000164840 uc003ylh.4 AB012911 NM_003506 "CCDS6298|CCDS55268" O60353 "9480858|14747478" MGI:108474 RGD:628816 FZD6 603409 280659 objectId:234 +HGNC:4045 FZD7 frizzled class receptor 7 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 FzE3 "frizzled (Drosophila) homolog 7|frizzled homolog 7 (Drosophila)|frizzled 7, seven transmembrane spanning receptor|frizzled family receptor 7" G protein-coupled receptors, Class F frizzled 286 1998-09-17 2014-01-29 2016-10-05 8324 ENSG00000155760 OTTHUMG00000132841 uc002uyw.2 AB010881 NM_003507 CCDS2351 O75084 "9707618|9813155" MGI:108570 RGD:2321905 FZD7 603410 objectId:235 +HGNC:4046 FZD8 frizzled class receptor 8 protein-coding gene gene with protein product Approved 10p11.21 10p11.21 "frizzled (Drosophila) homolog 8|frizzled homolog 8 (Drosophila)|frizzled 8, seven transmembrane spanning receptor|frizzled family receptor 8" G protein-coupled receptors, Class F frizzled 286 1998-09-17 2014-01-29 2016-10-05 8325 ENSG00000177283 OTTHUMG00000017956 uc001iyz.2 AB043703 NM_031866 CCDS7192 Q9H461 11295046 MGI:108460 RGD:1560525 FZD8 606146 objectId:236 +HGNC:4047 FZD9 frizzled class receptor 9 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "FZD3|CD349" "frizzled (Drosophila) homolog 9|frizzled homolog 9 (Drosophila)|frizzled 9, seven transmembrane spanning receptor|frizzled family receptor 9" "G protein-coupled receptors, Class F frizzled|CD molecules" "286|471" 1998-09-17 2014-01-29 2015-09-11 8326 ENSG00000188763 OTTHUMG00000023051 uc003tyb.4 U82169 NM_003508 CCDS5548 O00144 "9147651|10198163" MGI:1313278 RGD:628817 FZD9 601766 objectId:237 CD349 +HGNC:4039 FZD10 frizzled class receptor 10 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 CD350 "frizzled (Drosophila) homolog 10|frizzled homolog 10 (Drosophila)|frizzled 10, seven transmembrane spanning receptor|frizzled family receptor 10" "G protein-coupled receptors, Class F frizzled|CD molecules" "286|471" 1999-09-09 2014-01-29 2015-09-01 11211 ENSG00000111432 OTTHUMG00000168380 uc001uii.4 AB027464 NM_007197 CCDS9267 Q9ULW2 10448064 MGI:2136761 RGD:1583825 FZD10 606147 objectId:238 CD350 +HGNC:48632 FZD10-AS1 FZD10 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 12q24.33 12q24.33 FLJ31485 2013-05-30 2013-05-30 440119 ENSG00000250208 OTTHUMG00000168379 AK123838 NR_033834 +HGNC:24824 FZR1 fizzy/cell division cycle 20 related 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "HCDH1|CDH1|HCDH|FZR|FZR2|KIAA1242|CDC20C" CDC20 homolog 1 fizzy/cell division cycle 20 related 1 (Drosophila) WD repeat domain containing 362 2004-03-31 2015-06-01 2015-07-22 51343 ENSG00000105325 OTTHUMG00000180747 uc002lxt.3 AF083810 NM_016263 "CCDS12109|CCDS45916|CCDS45917" Q9UM11 "9734353|11003657" MGI:1926790 RGD:1308713 FZR1 603619 +HGNC:20338 G2E3 G2/M-phase specific E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 14q12 14q12 "FLJ20333|PHF7B" PHD finger protein 7B KIAA1333 KIAA1333 PHD finger proteins 88 2003-11-21 2009-02-03 2010-09-17 2014-11-19 55632 ENSG00000092140 OTTHUMG00000140204 uc001wqk.3 AK000340 NM_017769 "CCDS9638|CCDS76669" Q7L622 "18511420|17239372" MGI:2444298 RGD:1310263 G2E3 611299 +HGNC:30292 G3BP1 G3BP stress granule assembly factor 1 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "HDH-VIII|G3BP" "Ras-GTPase-activating protein SH3-domain-binding protein|DNA helicase VIII" GTPase activating protein (SH3 domain) binding protein 1 RNA binding motif containing 725 2006-10-25 2016-02-29 2016-02-29 10146 ENSG00000145907 OTTHUMG00000130123 uc003lum.4 BC006997 NM_005754 CCDS4319 Q13283 "8649363|9889278|25229650" MGI:1351465 RGD:621140 G3BP1 608431 +HGNC:30291 G3BP2 G3BP stress granule assembly factor 2 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 KIAA0660 Ras-GTPase activating protein SH3 domain-binding protein 2 GTPase activating protein (SH3 domain) binding protein 2 RNA binding motif containing 725 2006-10-25 2016-02-29 2016-02-29 9908 ENSG00000138757 OTTHUMG00000130097 uc003his.4 AB014560 NM_012297 "CCDS3571|CCDS3572" Q9UN86 "9734811|9575347|22536444" MGI:2442040 RGD:1309571 G3BP2 +HGNC:4056 G6PC glucose-6-phosphatase catalytic subunit protein-coding gene gene with protein product Approved 17q21.31 17q21.31 GSD1a glycogen storage disease type I, von Gierke disease G6PT glucose-6-phosphatase, catalytic (glycogen storage disease type I, von Gierke disease) Glucose 6-phosphatases, catalytic 1074 1993-11-05 2016-03-14 2016-10-12 2538 ENSG00000131482 OTTHUMG00000180657 uc002icb.3 U01120 NM_000151 "CCDS11446|CCDS59291" P35575 7774924 MGI:95607 RGD:2644 LRG_147|http://www.lrg-sequence.org/LRG/LRG_147 G6PC 613742 121980 3.1.3.9 +HGNC:28906 G6PC2 glucose-6-phosphatase catalytic subunit 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 IGRP islet specific glucose 6 phosphatase catalytic subunit related protein glucose-6-phosphatase, catalytic, 2 Glucose 6-phosphatases, catalytic 1074 2004-03-29 2016-03-14 2016-03-14 57818 ENSG00000152254 OTTHUMG00000132182 uc002uem.4 AF283575 NM_021176 "CCDS2230|CCDS46443" Q9NQR9 "10078553|10078554" MGI:1277193 RGD:69398 G6PC2 608058 +HGNC:24861 G6PC3 glucose-6-phosphatase catalytic subunit 3 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 UGRP glucose 6 phosphatase, catalytic, 3 Glucose 6-phosphatases, catalytic 1074 2004-03-29 2016-05-27 2016-10-12 92579 ENSG00000141349 OTTHUMG00000181805 uc002iex.4 BC021574 NM_138387 CCDS11476 Q9BUM1 "12370122|12965222" MGI:1915651 RGD:727875 LRG_182|http://www.lrg-sequence.org/LRG/LRG_182 G6PC3 611045 171034 3.1.3.9 +HGNC:4057 G6PD glucose-6-phosphate dehydrogenase protein-coding gene gene with protein product Approved Xq28 Xq28 G6PD1 2001-06-22 2016-10-12 2539 ENSG00000160211 OTTHUMG00000024237 uc004flx.3 X03674 NM_000402 "CCDS14756|CCDS44023" P11413 "3012556|2428611" MGI:105979 RGD:2645 "G6PD Mutations|http://www.bioinf.org.uk/g6pd/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=G6PD|LRG_148|http://www.lrg-sequence.org/LRG/LRG_148" G6PD 305900 121984 1.1.1.49 +HGNC:4058 G6PDL entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-07-10 +HGNC:4059 G6PR glucose-6-phosphatase regulator other unknown Approved reserved reserved GSD1aSP glucose-6-phosphatase, regulatory 1998-07-15 2004-05-20 2016-04-20 2541 "2172641|7814621|2996501" +HGNC:4064 G7P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-02-24 +HGNC:4065 GAA glucosidase alpha, acid protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "Pompe disease|glycogen storage disease type II" glucosidase, alpha; acid 1986-01-01 2016-03-30 2016-10-12 2548 ENSG00000171298 OTTHUMG00000177537 uc002jxo.4 XM_005257193 CCDS32760 P10253 MGI:95609 RGD:735227 "GAA - Pompe disease (glycogen storage disease type II)|http://www.LOVD.nl/GAA|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=GAA|LRG_673|http://www.lrg-sequence.org/LRG/LRG_673" GAA 606800 121987 objectId:2611 3.2.1.20 +HGNC:4066 GAB1 GRB2 associated binding protein 1 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 Pleckstrin homology domain containing 682 1996-12-18 2015-11-18 2016-10-05 2549 ENSG00000109458 OTTHUMG00000161432 uc003ijd.4 U43885 NM_002039 "CCDS3759|CCDS3760" Q13480 8596638 MGI:108088 RGD:1311085 GAB1 604439 +HGNC:14458 GAB2 GRB2 associated binding protein 2 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 KIAA0571 Grb2-associated binder 2 Pleckstrin homology domain containing 682 2001-01-24 2015-11-18 2015-11-18 9846 ENSG00000033327 OTTHUMG00000166673 uc001ozh.4 AB011143 NM_080491 "CCDS8259|CCDS8260" Q9UQC2 "10391903|10068651" MGI:1333854 RGD:621367 GAB2 606203 +HGNC:17515 GAB3 GRB2 associated binding protein 3 protein-coding gene gene with protein product Approved Xq28 Xq28 "DOS/Gab family member 3|Gab3 scaffolding protein" Pleckstrin homology domain containing 682 2002-03-05 2015-11-18 2015-11-18 139716 ENSG00000160219 OTTHUMG00000024245 uc004fmj.3 AY057989 NM_001081573 "CCDS14760|CCDS48198|CCDS65357" Q8WWW8 11739737 MGI:2387324 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GAB3 GAB3 300482 +HGNC:18325 GAB4 GRB2 associated binding protein family member 4 protein-coding gene gene with protein product Approved 22q11.1 22q11.1 GRB2-associated binding protein family, member 4 Pleckstrin homology domain containing 682 2004-07-22 2015-11-17 2016-10-05 128954 ENSG00000215568 OTTHUMG00000149992 uc002zlw.4 AK057252 XM_372882 CCDS42976 Q2WGN9 GAB4 +HGNC:4067 GABARAP GABA type A receptor-associated protein protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MM46|ATG8A" GABA(A) receptor-associated protein Autophagy related 1022 1999-09-29 2016-03-17 2016-03-17 11337 ENSG00000170296 OTTHUMG00000102156 uc002gfb.4 AF161586 NM_007278 CCDS11092 O95166 9892355 MGI:1861742 RGD:61911 GABARAP 605125 +HGNC:4068 GABARAPL1 GABA type A receptor associated protein like 1 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "gec1|APG8L|ATG8L|ATG8B" GABA(A) receptor-associated protein like 1 Autophagy related 1022 1999-09-29 2016-03-17 2016-10-05 23710 ENSG00000139112 OTTHUMG00000168411 uc001qxs.4 AF087847 XM_005253344 CCDS8620 Q9H0R8 "11414770|11374880" MGI:1914980 RGD:1596143 GABARAPL1 607420 +HGNC:13291 GABARAPL2 GABA type A receptor associated protein like 2 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "GEF2|ATG8|GATE16|GATE-16|ATG8C" GABA(A) receptor-associated protein like 2 Autophagy related 1022 2001-07-09 2016-03-17 2016-10-05 11345 ENSG00000034713 OTTHUMG00000137613 uc002fen.3 AF087848 NM_007285 CCDS10921 P60520 11414770 MGI:1890602 RGD:620510 GABARAPL2 607452 +HGNC:4069 GABARAPL3 GABA type A receptor associated protein like 3 pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 ATG8D "GABA(A) receptors associated protein like 3|GABA(A) receptors associated protein like 3 (pseudogene)|GABA(A) receptors associated protein like 3, pseudogene" 1999-10-29 2016-03-17 2016-03-17 23766 ENSG00000238244 OTTHUMG00000189344 uc059nep.1 AF180519 NR_028287 Q9BY60 11414770 GABARAPL3 +HGNC:4070 GABBR1 gamma-aminobutyric acid type B receptor subunit 1 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "hGB1a|GPRC3A" GABA-B receptor gamma-aminobutyric acid (GABA) B receptor, 1 "Gamma-aminobutyric acid type B receptor subunits|Sushi domain containing" "280|1179" 1998-04-21 2016-02-04 2016-10-05 2550 ENSG00000204681 OTTHUMG00000031095 uc003nmt.5 Y11044 XM_006715047 "CCDS4663|CCDS4664|CCDS4665" Q9UBS5 "9753614|9798068" MGI:1860139 RGD:621537 GABBR1 603540 objectId:240 +HGNC:4507 GABBR2 gamma-aminobutyric acid type B receptor subunit 2 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "HG20|GABABR2|GPRC3B" GPR51 "G protein-coupled receptor 51|gamma-aminobutyric acid (GABA) B receptor, 2" Gamma-aminobutyric acid type B receptor subunits 280 1999-04-23 2006-02-16 2016-02-04 2016-10-05 9568 ENSG00000136928 OTTHUMG00000020345 uc004ays.5 AF069755 XM_017015331 CCDS6736 O75899 10087195 MGI:2386030 RGD:619864 GABBR2 607340 objectId:241 +HGNC:4071 GABPA GA binding protein transcription factor alpha subunit protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "E4TF1A|NFT2|NRF2|E4TF1-60|NRF2A" "human nuclear respiratory factor-2 subunit alpha|nuclear respiratory factor 2 alpha subunit" "GA-binding protein transcription factor, alpha subunit (60kD)|GA binding protein transcription factor, alpha subunit 60kDa" ETS transcription factor family 534 1994-01-18 2015-11-09 2016-10-05 2551 ENSG00000154727 OTTHUMG00000078443 uc002ylx.5 NM_002040 CCDS13575 Q06546 8441384 MGI:95610 RGD:1310802 GABPA 600609 +HGNC:4072 GABPAP GA binding protein transcription factor alpha subunit pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 "E4TF1|E4TF1B" GABPB1 "GA binding protein transcription factor, beta subunit 1, 53kDa|GA binding protein transcription factor, alpha subunit pseudogene" 1998-09-18 2016-03-07 2016-10-05 8327 ENSG00000235720 OTTHUMG00000156550 NG_007342 "8441384|10393246" PGOHUM00000302722 +HGNC:4074 GABPB1 GA binding protein transcription factor beta subunit 1 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "E4TF1-47|GABPB" GABPB2 GA binding protein transcription factor, beta subunit 2 Ankyrin repeat domain containing 403 1994-01-18 2008-02-25 2016-03-07 2016-03-07 2553 ENSG00000104064 OTTHUMG00000131642 uc001zya.4 D13316 NM_001320910 "CCDS10135|CCDS10136|CCDS32239|CCDS45258" Q06547 7958862 MGI:95611 RGD:1560391 GABPB1 600610 +HGNC:44157 GABPB1-AS1 GABPB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q21.2 15q21.2 GABPB1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-01-15 100129387 ENSG00000244879 OTTHUMG00000172396 uc001zyi.4 NR_024490 24036268 +HGNC:28441 GABPB2 GA binding protein transcription factor beta subunit 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 MGC29891 Ankyrin repeat domain containing 403 2008-02-25 2016-03-07 2016-10-05 126626 ENSG00000143458 OTTHUMG00000012193 uc001ewr.3 NM_144618 "CCDS983|CCDS81373" Q8TAK5 7958862 MGI:95612 RGD:1565234 GABPB2 +HGNC:4075 GABRA1 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding gene gene with protein product Approved 5q34 05q34 EJM5 GABA(A) receptor, alpha 1 gamma-aminobutyric acid (GABA) A receptor, alpha 1 Gamma-aminobutyric acid type A receptor subunits 563 1989-06-02 2016-02-04 2016-02-04 2554 ENSG00000022355 OTTHUMG00000163586 uc010jix.5 NM_000806.5 CCDS4357 P14867 1330891 MGI:95613 RGD:61855 GABRA1 137160 121989 objectId:404 +HGNC:4076 GABRA2 gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding gene gene with protein product Approved 4p12 04p12 GABA(A) receptor, alpha 2 gamma-aminobutyric acid (GABA) A receptor, alpha 2 Gamma-aminobutyric acid type A receptor subunits 563 1989-06-02 2016-02-04 2016-02-04 2555 ENSG00000151834 OTTHUMG00000044266 uc062wij.1 XM_017007982 "CCDS3471|CCDS82921" P47869 MGI:95614 RGD:61856 GABRA2 137140 objectId:405 +HGNC:4077 GABRA3 gamma-aminobutyric acid type A receptor alpha3 subunit protein-coding gene gene with protein product Approved Xq28 Xq28 GABA(A) receptor, alpha 3 gamma-aminobutyric acid (GABA) A receptor, alpha 3 Gamma-aminobutyric acid type A receptor subunits 563 1989-06-06 2016-02-04 2016-02-04 2556 ENSG00000011677 OTTHUMG00000024183 uc010ntk.2 NM_000808 CCDS14706 P34903 MGI:95615 RGD:2648 GABRA3 305660 199890 objectId:406 +HGNC:4078 GABRA4 gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding gene gene with protein product Approved 4p12 04p12 GABA(A) receptor, alpha 4 gamma-aminobutyric acid (GABA) A receptor, alpha 4 Gamma-aminobutyric acid type A receptor subunits 563 1994-07-15 2016-02-04 2016-02-04 2557 ENSG00000109158 OTTHUMG00000099431 uc003gxg.3 NM_000809 CCDS3473 P48169 7607683 MGI:95616 RGD:621670 GABRA4 137141 objectId:407 +HGNC:4079 GABRA5 gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding gene gene with protein product Approved 15q12 15q12 GABA(A) receptor, alpha 5 gamma-aminobutyric acid (GABA) A receptor, alpha 5 Gamma-aminobutyric acid type A receptor subunits 563 1992-08-07 2016-02-04 2016-02-04 2558 ENSG00000186297 OTTHUMG00000171824 uc001zbd.3 XM_006720459 CCDS45194 P31644 1321750 MGI:95617 RGD:61859 GABRA5 137142 objectId:408 +HGNC:4080 GABRA6 gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding gene gene with protein product Approved 5q34 05q34 GABA(A) receptor, alpha 6 gamma-aminobutyric acid (GABA) A receptor, alpha 6 Gamma-aminobutyric acid type A receptor subunits 563 1994-04-20 2016-02-04 2016-02-04 2559 ENSG00000145863 OTTHUMG00000130351 uc003lyu.3 NM_000811 CCDS4356 Q16445 8020978 MGI:95618 RGD:61861 GABRA6 137143 objectId:409 +HGNC:4081 GABRB1 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding gene gene with protein product Approved 4p12 04p12 GABA(A) receptor, beta 1 gamma-aminobutyric acid (GABA) A receptor, beta 1 Gamma-aminobutyric acid type A receptor subunits 563 1989-06-02 2016-02-04 2016-02-04 2560 ENSG00000163288 OTTHUMG00000044269 uc003gxh.4 XM_017007985 CCDS3474 P18505 MGI:95619 RGD:2649 GABRB1 137190 objectId:410 +HGNC:4082 GABRB2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding gene gene with protein product Approved 5q34 05q34 GABA(A) receptor, beta 2 gamma-aminobutyric acid (GABA) A receptor, beta 2 Gamma-aminobutyric acid type A receptor subunits 563 1994-04-29 2016-02-04 2016-02-04 2561 ENSG00000145864 OTTHUMG00000130349 uc063jhc.1 NM_000813 "CCDS4354|CCDS4355" P47870 7851879 MGI:95620 RGD:2650 GABRB2 600232 objectId:411 +HGNC:4083 GABRB3 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding gene gene with protein product Approved 15q12 15q12 GABA(A) receptor, beta 3 gamma-aminobutyric acid (GABA) A receptor, beta 3 Gamma-aminobutyric acid type A receptor subunits 563 1991-06-05 2016-02-04 2016-02-04 2562 ENSG00000166206 OTTHUMG00000129231 uc001zaz.5 XM_011521428 "CCDS10018|CCDS10019|CCDS53920|CCDS53921" P28472 MGI:95621 RGD:2651 GABRB3 137192 159621 objectId:412 +HGNC:4084 GABRD gamma-aminobutyric acid type A receptor delta subunit protein-coding gene gene with protein product Approved 1p36.33 01p36.33 GABA(A) receptor, delta gamma-aminobutyric acid (GABA) A receptor, delta Gamma-aminobutyric acid type A receptor subunits 563 1991-08-06 2016-02-04 2016-10-05 2563 ENSG00000187730 OTTHUMG00000041064 uc001aip.3 BC033801 NM_000815 CCDS36 O14764 "2176788|10965146" MGI:95622 RGD:61901 GABRD 137163 121991 objectId:416 +HGNC:4085 GABRE gamma-aminobutyric acid type A receptor epsilon subunit protein-coding gene gene with protein product Approved Xq28 Xq28 GABA(A) receptor, epsilon gamma-aminobutyric acid (GABA) A receptor, epsilon Gamma-aminobutyric acid type A receptor subunits 563 1997-03-19 2016-02-04 2016-02-04 2564 ENSG00000102287 OTTHUMG00000024176 uc004ffi.3 Y09765 "NM_004961|NM_021990|NM_021984" CCDS14703 P78334 "9039914|9084408" MGI:1330235 RGD:68320 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GABRE GABRE 300093 objectId:417 +HGNC:4086 GABRG1 gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding gene gene with protein product Approved 4p12 04p12 GABA(A) receptor, gamma gamma-aminobutyric acid (GABA) A receptor, gamma 1 Gamma-aminobutyric acid type A receptor subunits 563 1991-07-09 2016-02-04 2016-02-04 2565 ENSG00000163285 OTTHUMG00000128609 uc003gxb.4 BC031087 NM_173536 CCDS3470 Q8N1C3 1321425 MGI:103156 RGD:621732 GABRG1 137166 objectId:413 +HGNC:4087 GABRG2 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding gene gene with protein product Approved 5q34 05q34 GABA(A) receptor, gamma 2 gamma-aminobutyric acid (GABA) A receptor, gamma 2 Gamma-aminobutyric acid type A receptor subunits 563 1991-02-26 2016-02-04 2016-02-04 2566 ENSG00000113327 OTTHUMG00000130350 uc003lyy.5 NM_198904 "CCDS4358|CCDS4359|CCDS47333" P18507 MGI:95623 RGD:61966 GABRG2 137164 121993 objectId:414 +HGNC:4088 GABRG3 gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding gene gene with protein product Approved 15q12 15q12 GABA(G) receptor, gamma 3 gamma-aminobutyric acid (GABA) A receptor, gamma 3 Gamma-aminobutyric acid type A receptor subunits 563 1994-07-15 2016-02-04 2016-02-04 2567 ENSG00000182256 OTTHUMG00000044462 uc001zbg.3 XM_011521430 "CCDS45195|CCDS59251" Q99928 7601451 MGI:95624 RGD:621735 GABRG3 600233 objectId:415 +HGNC:40249 GABRG3-AS1 GABRG3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q12 15q12 2014-11-21 2014-11-21 101928869 ENSG00000228740 OTTHUMG00000056664 "DB073112|BU567553" NR_120343 +HGNC:4089 GABRP gamma-aminobutyric acid type A receptor pi subunit protein-coding gene gene with protein product Approved 5q35.1 05q35.1 GABA(A) receptor, pi gamma-aminobutyric acid (GABA) A receptor, pi Gamma-aminobutyric acid type A receptor subunits 563 1997-06-18 2016-02-04 2016-02-04 2568 ENSG00000094755 OTTHUMG00000130443 uc003mau.4 U95367 NM_014211 "CCDS4375|CCDS75368" O00591 9182563 MGI:2387597 RGD:620532 GABRP 602729 objectId:419 +HGNC:14454 GABRQ gamma-aminobutyric acid type A receptor theta subunit protein-coding gene gene with protein product Approved Xq28 Xq28 THETA GABA(A) receptor, theta "gamma-aminobutyric acid (GABA) receptor, theta|gamma-aminobutyric acid (GABA) A receptor, theta" Gamma-aminobutyric acid type A receptor subunits 563 2001-01-24 2016-02-04 2016-02-04 55879 ENSG00000268089 OTTHUMG00000022649 uc004ffp.2 U47334 NM_018558 CCDS14707 Q9UN88 "10804200|10449790" MGI:1888498 RGD:68331 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GABRQ GABRQ 300349 objectId:418 +HGNC:4090 GABRR1 gamma-aminobutyric acid type A receptor rho1 subunit protein-coding gene gene with protein product Approved 6q15 06q15 GABA(A) receptor, rho 1 "gamma-aminobutyric acid (GABA) receptor, rho 1|gamma-aminobutyric acid (GABA) A receptor, rho 1" Gamma-aminobutyric acid type A receptor subunits 563 1991-08-08 2016-02-04 2016-02-04 2569 ENSG00000146276 OTTHUMG00000015195 uc003pna.3 XM_017010689 "CCDS5019|CCDS59028|CCDS59029" P24046 "1849271|1315307" MGI:95625 RGD:61900 GABRR1 137161 objectId:420 +HGNC:4091 GABRR2 gamma-aminobutyric acid type A receptor rho2 subunit protein-coding gene gene with protein product Approved 6q15 06q15 GABA(A) receptor, rho 2 "gamma-aminobutyric acid (GABA) receptor, rho 2|gamma-aminobutyric acid (GABA) A receptor, rho 2" Gamma-aminobutyric acid type A receptor subunits 563 1991-10-22 2016-02-04 2016-04-25 2570 ENSG00000111886 OTTHUMG00000015198 uc003pnb.4 NM_002043 CCDS5020 P28476 1315307 MGI:95626 RGD:61902 GABRR2 137162 objectId:421 +HGNC:17969 GABRR3 gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding gene gene with protein product Approved 3q11.2 03q11.2 GABA(A) receptor, rho 3 "gamma-aminobutyric acid (GABA) receptor, rho 3|gamma-aminobutyric acid (GABA) A receptor, rho 3|gamma-aminobutyric acid (GABA) A receptor, rho 3 (gene/pseudogene)" Gamma-aminobutyric acid type A receptor subunits 563 2004-07-28 2016-02-04 2016-02-04 200959 ENSG00000183185 OTTHUMG00000159135 uc021xbo.2 Y18994 NM_001105580 CCDS54617 A8MPY1 10542332 MGI:3588203 RGD:621564 GABRR3 objectId:422 +HGNC:48336 GACAT1 gastric cancer associated transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 2q12.3 02q12.3 "LINC00876|AC096655.1-002" long intergenic non-protein coding RNA 876 Long non-coding RNAs 788 2013-05-05 2014-07-18 104326057 ENSG00000232991 OTTHUMG00000153313 DB096621 NR_126370 "23645148|24833871" +HGNC:50516 GACAT2 gastric cancer associated transcript 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 18p11.22 18p11.22 HMlincRNA717 MTCL1-AS1 MTCL1 antisense RNA 1 Long non-coding RNAs 788 2014-05-14 2014-06-26 2014-06-26 2014-08-06 100287082 ENSG00000265962 OTTHUMG00000178955 BM709340 NR_120598 "24833871|24063685|24961350|25077925" 616131 +HGNC:50847 GACAT3 gastric cancer associated transcript 3 (non-protein coding) non-coding RNA RNA, long non-coding Approved 2p24.3 02p24.3 lncRNA-AC130710 LINC01458 long intergenic non-protein coding RNA 1458 Long non-coding RNAs 788 2014-06-25 2014-07-01 2014-07-01 2014-08-06 104797537 ENSG00000236289 OTTHUMG00000151744 "BX375330|BX107472" NR_126559 "24969565|25077925" 616132 +HGNC:4092 GAD1 glutamate decarboxylase 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 GAD "glutamate decarboxylase 1 (brain, 67kD)|glutamate decarboxylase 1 (brain, 67kDa)" 1986-01-01 2015-11-05 2016-10-05 2571 ENSG00000128683 OTTHUMG00000044175 uc002ugi.4 XM_017003756 "CCDS2239|CCDS2240" Q99259 1549570 MGI:95632 RGD:2652 GAD1 605363 270043 objectId:1272 4.1.1.15 +HGNC:4093 GAD2 glutamate decarboxylase 2 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 GAD65 "glutamate decarboxylase 2 (pancreatic islets and brain, 65kD)|glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)" 1991-11-29 2015-11-05 2016-10-05 2572 ENSG00000136750 OTTHUMG00000017836 uc001isp.3 AJ251501 NM_000818 CCDS7149 Q05329 2039509 MGI:95634 RGD:2653 GAD2 138275 objectId:1273 4.1.1.15 +HGNC:4094 GAD3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4095 GADD45A growth arrest and DNA damage inducible alpha protein-coding gene gene with protein product Approved 1p31.3 01p31.3 GADD45 DDIT1 growth arrest and DNA-damage-inducible, alpha 1991-08-17 2015-11-16 2016-10-05 1647 ENSG00000116717 OTTHUMG00000009374 uc001ddz.3 M60974 NM_001924 "CCDS640|CCDS55605|CCDS72806" P24522 "1990262|8226988" MGI:107799 RGD:2654 GADD45A 126335 +HGNC:2725 GADD45AP1 growth arrest and DNA damage inducible alpha pseudogene 1 pseudogene pseudogene Approved 12q21.32 12q21.32 "DDIT1L|GADD45AL" "DNA-damage-inducible transcript 1-like|growth arrest and DNA-damage-inducible, alpha-like|growth arrest and DNA-damage-inducible, alpha pseudogene 1" 1991-08-17 2010-08-27 2015-11-16 2015-11-16 1648 NG_031939 1990262 +HGNC:4096 GADD45B growth arrest and DNA damage inducible beta protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "GADD45BETA|DKFZP566B133" "myeloid differentiation primary response|growth arrest and DNA-damage-inducible beta" MYD118 growth arrest and DNA-damage-inducible, beta 1994-01-10 2015-11-16 2015-11-16 4616 ENSG00000099860 OTTHUMG00000180434 uc002lwb.3 AF090950 NM_015675 CCDS32868 O75293 "1899477|9827804" MGI:107776 RGD:1309080 GADD45B 604948 +HGNC:4097 GADD45G growth arrest and DNA damage inducible gamma protein-coding gene gene with protein product Approved 9q22.2 09q22.2 "DDIT2|GADD45gamma|GRP17|CR6" "gadd-related protein, 17 kD|growth arrest and DNA-damage-inducible gamma" growth arrest and DNA-damage-inducible, gamma 1999-09-06 2015-11-16 2016-10-05 10912 ENSG00000130222 OTTHUMG00000020187 uc004aqq.4 D83023 NM_006705 CCDS6686 O95257 "9827804|10496071" MGI:1346325 RGD:1311796 GADD45G 604949 +HGNC:29996 GADD45GIP1 GADD45G interacting protein 1 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "PLINP-1|MGC4667|MGC4758|CKBBP2|PRG6|Plinp1|CRIF1|CKbetaBP2" "papillomavirus L2 interacting nuclear protein 1|CKII beta binding protein 2|CR6 interacting factor 1|p53-responsive gene 6" growth arrest and DNA-damage-inducible, gamma interacting protein 1 2004-03-30 2015-11-16 2016-10-05 90480 ENSG00000179271 OTTHUMG00000180724 uc002mwb.5 AF479749 NM_052850 CCDS12290 Q8TAE8 "10441517|12482659" MGI:1914947 RGD:1309249 GADD45GIP1 605162 +HGNC:27949 GADL1 glutamate decarboxylase like 1 protein-coding gene gene with protein product Approved 3p24.1-p23 03p24.1-p23 glutamate decarboxylase-like 1 2004-07-28 2015-11-11 2016-10-11 339896 ENSG00000144644 OTTHUMG00000130621 uc003cep.3 AK128643 NM_207359 CCDS2649 Q6ZQY3 MGI:1920998 RGD:1565145 GADL1 615601 +HGNC:4098 GAGE1 G antigen 1 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 CT4.1 cancer/testis antigen family 4, member 1 1995-05-10 2014-11-19 2543 ENSG00000205777 OTTHUMG00000024150 uc064zfw.1 U19142 NM_001468 CCDS43950 Q13065 7544395 GAGE1 300594 +HGNC:4099 GAGE2A G antigen 2A protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 CT4.2 cancer/testis antigen family 4, member 2 GAGE2 G antigen 2 1995-05-10 2007-07-23 2007-07-23 2014-11-19 729447 ENSG00000189064 OTTHUMG00000024143 uc004doi.6 U19143 NM_001127212 CCDS48114 Q6NT46 7544395 GAGE2A 300720 +HGNC:31957 GAGE2B G antigen 2B protein-coding gene gene with protein product Approved Xp11.23 not on reference assembly Xp11.23 not on reference assembly 2007-11-07 2015-01-29 645037 OTTHUMG00000067391 NM_001098411 Q13066 GAGE2B 300726 +HGNC:31958 GAGE2C G antigen 2C protein-coding gene gene with protein product Approved Xp11.23 not on reference assembly Xp11.23 not on reference assembly 2007-11-07 2015-01-29 2574 OTTHUMG00000067392 NM_001472 Q13066 300595 +HGNC:31959 GAGE2D G antigen 2D protein-coding gene gene with protein product Approved Xp11.23 not on reference assembly Xp11.23 not on reference assembly GAGE8 2007-11-07 2016-01-29 729408 NM_001098407 Q9UEU5 GAGE2D 300735 +HGNC:31960 GAGE2E G antigen 2E protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 GAGE8 2007-11-07 2015-01-29 26749 ENSG00000275113 OTTHUMG00000067394 uc064zfu.1 NM_001127200 Q4V326 GAGE2E 300736 +HGNC:4100 GAGE3 G antigen 3 other unknown Approved Xp11.23 not on reference assembly Xp11.23 not on reference assembly CT4.3 cancer/testis antigen family 4, member 3 1995-05-10 2015-01-09 2575 U19144 NM_001473 Q13067 7544395 300596 +HGNC:4101 GAGE4 G antigen 4 other unknown Approved Xp11.4-p11.2 not on reference assembly Xp11.4-p11.2 not on reference assembly CT4.4 cancer/testis antigen family 4, member 4 1995-05-10 2015-01-09 2576 U19145 NM_001474 Q13068 7544395 300597 +HGNC:4102 GAGE5 G antigen 5 other unknown Approved Xp11.4-p11.2 not on reference assembly Xp11.4-p11.2 not on reference assembly CT4.5 cancer/testis antigen family 4, member 5 1995-05-10 2015-01-09 2577 U19146 NM_001475 Q13069 7544395 300598 +HGNC:4103 GAGE6 G antigen 6 other unknown Approved Xp11.4-p11.2 not on reference assembly Xp11.4-p11.2 not on reference assembly CT4.6 cancer/testis antigen family 4, member 6 1995-05-10 2015-01-09 2578 U19147 NM_001476 Q13070 7544395 300599 +HGNC:4104 GAGE7 G antigen 7 other unknown Approved Xp11.4-p11.2 not on reference assembly Xp11.4-p11.2 not on reference assembly "GAGE-7|CT4.7" cancer/testis antigen family 4, member 7 1998-08-10 2015-01-09 2579 AF058988 NM_021123 O76087 9651357 300601 +HGNC:4106 GAGE8 G antigen 8 other unknown Approved Xp11 not on reference assembly Xp11 not on reference assembly CT4.8 cancer/testis antigen family 4, member 8 1999-12-14 2015-01-09 100101629 AF055473 NM_012196 Q9UEU5 10397259 300638 +HGNC:30968 GAGE10 G antigen 10 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024136 2006-07-04 2014-12-18 102724473 ENSG00000215274 OTTHUMG00000024136 uc033ede.2 NM_001098413 CCDS78483 A6NGK3 GAGE10 300737 +HGNC:26779 GAGE12B G antigen 12B protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024142 2006-07-04 2014-11-19 729428 ENSG00000236737 OTTHUMG00000024142 uc064zfv.1 BC130374 NM_001127345 A1L429 +HGNC:28402 GAGE12C G antigen 12C protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024144 2006-07-04 2014-11-18 729422 ENSG00000237671 OTTHUMG00000024144 uc004doc.5 NM_001098408 CCDS43943 A1L429 GAGE12C 300727 +HGNC:31904 GAGE12D G antigen 12D protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024145 2006-07-04 2014-11-19 100132399 ENSG00000227488 OTTHUMG00000024145 uc004dod.5 NM_001127199 CCDS48113 A1L429 GAGE12D 300728 +HGNC:31905 GAGE12E G antigen 12E protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024146 2006-07-04 2014-11-18 729431 ENSG00000216649 OTTHUMG00000024146 uc004doe.5 NM_001098418 CCDS43945 A1L429 GAGE12E 300729 +HGNC:31906 GAGE12F G antigen 12F protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024147 2006-07-04 2014-11-19 100008586 ENSG00000236362 OTTHUMG00000024147 uc004dof.5 NM_001098405 CCDS43946 P0CL80 GAGE12F 300730 +HGNC:31907 GAGE12G G antigen 12G protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024148 2006-07-04 2014-11-19 645073 ENSG00000215269 OTTHUMG00000024148 uc004dog.5 NM_001098409 CCDS43947 P0CL81 GAGE12G 300731 +HGNC:31908 GAGE12H G antigen 12H protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024149 2006-07-04 2014-11-19 729442 ENSG00000224902 OTTHUMG00000024149 uc004doh.5 NM_001098410 CCDS43948 A6NDE8 GAGE12H 300732 +HGNC:4105 GAGE12I G antigen 12I protein-coding gene gene with protein product Approved Xp11.23 not on reference assembly Xp11.23 not on reference assembly OTTHUMG00000067390 GAGE7B G antigen 7B 1999-12-14 2007-07-23 2007-07-23 2015-01-09 26748 AF055474 NM_001477 P0CL82 "10397259|23029259" GAGE12I 300637 +HGNC:17778 GAGE12J G antigen 12J protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024137 GAGE11 G antigen 11 2006-07-04 2007-07-23 2007-07-23 2014-11-19 729396 ENSG00000224659 OTTHUMG00000024137 uc033edf.2 NM_001098406 CCDS43939 A6NER3 GAGE12J 300733 +HGNC:29081 GAGE13 G antigen 13 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMG00000024138 GAGE12A G antigen 12A 2006-07-04 2007-07-23 2007-07-23 2015-01-29 645051 ENSG00000274274 OTTHUMG00000024138 uc064zft.1 NM_001098412 CCDS48110 Q4V321 GAGE13 300734 +HGNC:4113 GAK cyclin G associated kinase protein-coding gene gene with protein product Approved 4p16.3 04p16.3 DNAJC26 auxilin-2 "DNAJ (HSP40) heat shock proteins|C2 tensin-type domain containing" "584|837" 1997-01-09 2016-10-05 2580 ENSG00000178950 OTTHUMG00000088301 uc003gbm.6 D88435 NM_005255 "CCDS3340|CCDS82902" O14976 9299234 MGI:2442153 RGD:621589 GAK 602052 objectId:2027 +HGNC:4114 GAL galanin and GMAP prepropeptide protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "GMAP|GAL-GMAP|GLNN" galanin-message-associated peptide GALN galanin Endogenous ligands 542 1993-06-22 2016-04-29 2016-04-29 51083 ENSG00000069482 OTTHUMG00000167890 uc001oob.4 L11144 NM_001479 CCDS8183 P22466 7508413 MGI:95637 RGD:61954 GAL 137035 +HGNC:24240 GAL3ST1 galactose-3-O-sulfotransferase 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 CST cerebroside (3' phosphoadenylylsulfate:galactosylceramide 3') sulfotransferase Sulfotransferases, membrane bound 763 2004-03-23 2014-11-19 9514 ENSG00000128242 OTTHUMG00000151200 uc062ddw.1 D88667 NM_004861 CCDS13879 Q99999 "9847074|9030544" MGI:1858277 RGD:1583379 GAL3ST1 602300 +HGNC:24869 GAL3ST2 galactose-3-O-sulfotransferase 2 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 GP3ST Sulfotransferases, membrane bound 763 2004-03-23 2016-10-05 64090 ENSG00000154252 OTTHUMG00000151473 uc002wcj.2 AB040610 NM_022134 CCDS33427 Q9H3Q3 11029462 "MGI:2685834|MGI:3711964|MGI:3646771" RGD:1593854 GAL3ST2 608237 +HGNC:24144 GAL3ST3 galactose-3-O-sulfotransferase 3 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 GAL3ST2 Sulfotransferases, membrane bound 763 2004-04-01 2014-11-19 89792 ENSG00000175229 OTTHUMG00000166667 uc001ogw.4 AY026481 NM_033036 CCDS8128 Q96A11 "11323440|11356829" MGI:3617843 RGD:1564991 GAL3ST3 608234 +HGNC:24145 GAL3ST4 galactose-3-O-sulfotransferase 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FLJ12116 Sulfotransferases, membrane bound 763 2004-03-23 2014-11-18 79690 ENSG00000197093 OTTHUMG00000154885 uc003utu.4 AF316113 NM_024637 CCDS5688 Q96RP7 11333265 MGI:1916254 RGD:1561105 GAL3ST4 608235 +HGNC:4115 GALC galactosylceramidase protein-coding gene gene with protein product Approved 14q31.3 14q31.3 Krabbe disease galactosylceramidase (Krabbe disease) 1989-06-02 2005-11-29 2016-10-05 2581 ENSG00000054983 OTTHUMG00000028646 uc001xvt.3 L23116 XM_011536618 "CCDS9878|CCDS55936|CCDS55937" P54803 MGI:95636 RGD:1359384 GALC 606890 121995 3.2.1.46 +HGNC:4116 GALE UDP-galactose-4-epimerase protein-coding gene gene with protein product Approved 1p36.11 01p36.11 SDR1E1 "short chain dehydrogenase/reductase family 1E, member 1|UDP-glucose 4-epimerase" galactose-4-epimerase, UDP- Short chain dehydrogenase/reductase superfamily 743 2001-06-22 2004-11-17 2016-10-05 2582 ENSG00000117308 OTTHUMG00000002958 uc001bhx.1 BC050685 NM_000403 CCDS242 Q14376 "8593531|19027726" MGI:1921496 RGD:621493 GALE 606953 121997 5.1.3.2 +HGNC:4118 GALK1 galactokinase 1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 GALK 1986-01-01 2015-08-25 2584 ENSG00000108479 OTTHUMG00000179832 uc032frw.2 NM_000154 CCDS11728 P51570 7670469 MGI:95730 RGD:1305375 GALK1 604313 121999 2.7.1.6 +HGNC:4119 GALK2 galactokinase 2 protein-coding gene gene with protein product Approved 15q21.1-q21.2 15q21.1-q21.2 GK2 1993-01-04 2016-10-11 2585 ENSG00000156958 OTTHUMG00000172325 uc001zxj.3 XM_005254279 "CCDS32236|CCDS42034|CCDS73724" Q01415 MGI:1917226 RGD:1308691 GALK2 137028 2.7.1.6 +HGNC:24063 GALM galactose mutarotase protein-coding gene gene with protein product Approved 2p22.1 02p22.1 "aldose 1-epimerase|aldose mutarotase|galactomutarotase" 2004-01-13 2016-05-26 2016-10-05 130589 ENSG00000143891 OTTHUMG00000102077 uc002rqy.4 NM_138801 CCDS1797 Q96C23 12753898 MGI:2442420 RGD:1359459 GALM 137030 5.1.3.3 +HGNC:4122 GALNS galactosamine (N-acetyl)-6-sulfatase protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "GAS|GALNAC6S" "Morquio syndrome|mucopolysaccharidosis type IVA" galactosamine (N-acetyl)-6-sulfate sulfatase Sulfatases 410 1992-02-21 2014-07-03 2015-08-27 2588 ENSG00000141012 OTTHUMG00000137862 uc002fly.4 D17629 NM_001323543 CCDS10970 P34059 1755850 MGI:1355303 RGD:1565391 GALNS 612222 122002 objectId:2765 3.1.6.4 +HGNC:4123 GALNT1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 GalNAc-T1 "protein-UDP acetylgalactosaminyltransferase 1|polypeptide GalNAc transferase 1" UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 (GalNAc-T1) Polypeptide N-acetylgalactosaminyltransferases 433 1996-10-26 2014-03-13 2016-10-05 2589 ENSG00000141429 OTTHUMG00000132567 uc002kzb.4 NM_020474 CCDS11915 Q10472 "7592619|12199709" MGI:894693 RGD:620358 GALNT1 602273 2.4.1.41 +HGNC:4124 GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 GalNAc-T2 polypeptide GalNAc transferase 2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) Polypeptide N-acetylgalactosaminyltransferases 433 1996-10-26 2014-03-13 2016-10-05 2590 ENSG00000143641 OTTHUMG00000037771 uc010pwa.2 BC041120 NM_004481 CCDS1582 Q10471 "9592121|7592619" MGI:894694 RGD:1310692 GALNT2 602274 2.4.1.41 +HGNC:4125 GALNT3 polypeptide N-acetylgalactosaminyltransferase 3 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "GalNAc-T3|HHS|HFTC" polypeptide GalNAc transferase 3 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3) Polypeptide N-acetylgalactosaminyltransferases 433 1996-10-26 2014-03-13 2016-10-05 2591 ENSG00000115339 OTTHUMG00000132157 uc010fph.2 NM_004482 CCDS2226 Q14435 "9592121|15133511" MGI:894695 RGD:1306443 GALNT3 601756 122006 2.4.1.41 +HGNC:4126 GALNT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding gene gene with protein product Approved 12q21.33 12q21.33 GalNAc-T4 polypeptide GalNAc transferase 4 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4 (GalNAc-T4) Polypeptide N-acetylgalactosaminyltransferases 433 1998-11-13 2014-03-13 2015-08-27 8693 ENSG00000257594 OTTHUMG00000166292 uc001tbd.4 Y08564 NM_003774 CCDS53817 Q8N4A0 9804815 MGI:894692 RGD:1564589 GALNT4 603565 2.4.1.41 +HGNC:4127 GALNT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding gene gene with protein product Approved 2q24.1 02q24.1 GalNAc-T5 polypeptide GalNAc transferase 5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 (GalNAc-T5) Polypeptide N-acetylgalactosaminyltransferases 433 1999-09-16 2014-03-13 2014-11-19 11227 ENSG00000136542 OTTHUMG00000131965 uc002tzg.4 AJ245539 NM_014568 CCDS2203 Q7Z7M9 10545594 MGI:2179403 RGD:620361 GALNT5 615129 2.4.1.41 +HGNC:4128 GALNT6 polypeptide N-acetylgalactosaminyltransferase 6 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 GalNAc-T6 polypeptide GalNAc transferase 6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) Polypeptide N-acetylgalactosaminyltransferases 433 1999-09-16 2014-03-13 2016-10-05 11226 ENSG00000139629 OTTHUMG00000185181 uc001ryl.2 Y08565 NM_007210 CCDS8813 Q8NCL4 10464263 MGI:1891640 RGD:2319726 GALNT6 605148 +HGNC:4129 GALNT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 GALNAC-T7 polypeptide GalNAc transferase 7 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7 (GalNAc-T7) Polypeptide N-acetylgalactosaminyltransferases 433 1999-09-16 2014-03-13 2016-10-05 51809 ENSG00000109586 OTTHUMG00000160817 uc003isz.4 AJ002744 NM_017423 CCDS3815 Q86SF2 10544240 MGI:1349449 RGD:620362 GALNT7 605005 +HGNC:4130 GALNT8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 GALNAC-T8 polypeptide GalNAc transferase 8 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8) Polypeptide N-acetylgalactosaminyltransferases 433 1999-11-26 2014-03-13 2015-08-27 26290 ENSG00000130035 OTTHUMG00000166188 uc001qne.2 AJ271385 NM_017417 CCDS8533 Q9NY28 10767557 GALNT8 606250 2.4.1.41 +HGNC:4131 GALNT9 polypeptide N-acetylgalactosaminyltransferase 9 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 GALNAC-T9 polypeptide GalNAc transferase 9 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9) Polypeptide N-acetylgalactosaminyltransferases 433 2000-03-29 2014-03-13 2015-09-11 50614 ENSG00000182870 OTTHUMG00000168256 uc001ukc.5 AB040672 NM_001122636 "CCDS41866|CCDS81755" Q9HCQ5 "10978536|12407114" MGI:2677965 RGD:1311523 GALNT9 606251 2.4.1.41 +HGNC:19873 GALNT10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 GalNAc-T10 polypeptide GalNAc transferase 10 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) Polypeptide N-acetylgalactosaminyltransferases 433 2002-11-28 2014-03-13 2016-10-05 55568 ENSG00000164574 OTTHUMG00000130145 uc003lvh.4 AK023782 NM_198321 CCDS4325 Q86SR1 12417297 MGI:1890480 RGD:69409 GALNT10 608043 2.4.1.41 +HGNC:19875 GALNT11 polypeptide N-acetylgalactosaminyltransferase 11 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 GalNAc-T11 polypeptide GalNAc transferase 11 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11 (GalNAc-T11) Polypeptide N-acetylgalactosaminyltransferases 433 2002-11-28 2014-05-09 2015-08-27 63917 ENSG00000178234 OTTHUMG00000157251 uc010lqg.2 AC006017 NM_022087 CCDS5930 Q8NCW6 11925450 MGI:2444392 RGD:735097 GALNT11 615130 2.4.1.41 +HGNC:19877 GALNT12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 GalNAc-T12 polypeptide GalNAc transferase 12 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) Polypeptide N-acetylgalactosaminyltransferases 433 2002-11-28 2014-03-13 2015-09-11 79695 ENSG00000119514 OTTHUMG00000020348 uc004ayz.3 AB078146 NM_024642 CCDS6737 Q8IXK2 12135769 MGI:2444664 RGD:1562001 GALNT12 610290 2.4.1.41 +HGNC:23242 GALNT13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding gene gene with protein product Approved 2q23.3-q24.1 02q23.3-q24.1 "KIAA1918|GalNAc-T13" "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13|polypeptide GalNAc transferase 13" UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13 (GalNAc-T13) Polypeptide N-acetylgalactosaminyltransferases 433 2003-12-02 2014-03-13 2016-10-11 114805 ENSG00000144278 OTTHUMG00000131917 uc002tyr.5 AB067505 NM_052917 "CCDS2199|CCDS77472" Q8IUC8 "11572484|12407114" MGI:2139447 RGD:735044 GALNT13 608369 2.4.1.41 +HGNC:22946 GALNT14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding gene gene with protein product Approved 2p23.1 02p23.1 "GalNac-T10|FLJ12691|GalNac-T14" polypeptide GalNAc transferase 14 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14 (GalNAc-T14) Polypeptide N-acetylgalactosaminyltransferases 433 2003-11-13 2014-03-13 2016-10-05 79623 ENSG00000158089 OTTHUMG00000074077 uc002rnr.4 AB078144 NM_024572 "CCDS1773|CCDS58705|CCDS58706" Q96FL9 12507512 MGI:1918935 RGD:1310068 GALNT14 608225 2.4.1.41 +HGNC:21531 GALNT15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "GALNT7|pp-GalNAc-T15" polypeptide GalNAc transferase 15 GALNTL2 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15" Polypeptide N-acetylgalactosaminyltransferases 433 2004-03-11 2013-01-25 2014-03-13 2014-11-19 117248 ENSG00000131386 OTTHUMG00000156893 uc003car.5 AY358443 NM_054110 "CCDS33711|CCDS82742" Q8N3T1 "12975309|14702039|15147861" MGI:1926004 RGD:2322081 615131 2.4.1.41 +HGNC:23233 GALNT16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 "KIAA1130|GalNAc-T16" polypeptide GalNAc transferase 16 GALNTL1 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16" Polypeptide N-acetylgalactosaminyltransferases 433 2003-10-30 2013-01-25 2014-03-13 2015-09-11 57452 ENSG00000100626 OTTHUMG00000171231 uc001xlb.3 AB032956 NM_001168368 CCDS32107 Q8N428 "10574461|22186971" MGI:1917754 RGD:1310202 GALNT16 615132 2.4.1.41 +HGNC:30488 GALNT18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "MGC71806|GALNT15|GalNAc-T18" polypeptide GalNAc transferase 18 GALNTL4 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18" Polypeptide N-acetylgalactosaminyltransferases 433 2004-07-21 2013-01-25 2014-03-13 2016-10-05 374378 ENSG00000110328 OTTHUMG00000165707 uc001mjo.3 AK055111 NM_198516 CCDS7807 Q6P9A2 22186971 MGI:2446239 RGD:1309623 615136 2.4.1.41 +HGNC:21725 GALNTL5 polypeptide N-acetylgalactosaminyltransferase-like 5 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 GalNAc-T5L polypeptide GalNAc transferase-like 5 GALNT15 "UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5" Polypeptide N-acetylgalactosaminyltransferases 433 2003-07-14 2004-07-28 2014-03-13 2016-10-05 168391 ENSG00000106648 OTTHUMG00000157306 uc064jlp.1 AF440400 NM_145292 CCDS5929 Q7Z4T8 MGI:1915159 RGD:1565271 GALNTL5 615133 +HGNC:33844 GALNTL6 polypeptide N-acetylgalactosaminyltransferase-like 6 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 "GALNT17|GalNAc-T6L" polypeptide GalNAc transferase-like 6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6 Polypeptide N-acetylgalactosaminyltransferases 433 2008-10-09 2014-03-13 2015-08-27 442117 ENSG00000174473 OTTHUMG00000160807 uc003isv.4 NM_001034845 CCDS34104 Q49A17 MGI:1913581 RGD:1564773 GALNTL6 615138 +HGNC:24840 GALP galanin like peptide protein-coding gene gene with protein product Approved 19q13.43 19q13.43 Endogenous ligands 542 2007-08-24 2015-11-16 2016-10-05 85569 ENSG00000197487 OTTHUMG00000181826 uc002qmo.1 AF188493 NM_033106 "CCDS12940|CCDS46202" Q9UBC7 10601261 MGI:2663979 RGD:620187 GALP 611178 +HGNC:4132 GALR1 galanin receptor 1 protein-coding gene gene with protein product Approved 18q23 18q23 "GALNR1|GALNR" Galanin receptors 226 1994-12-19 2014-11-19 2587 ENSG00000166573 OTTHUMG00000132875 uc002lms.5 U90658 XM_017025691 CCDS12012 P47211 7524088 MGI:1096364 RGD:2656 GALR1 600377 objectId:243 +HGNC:4133 GALR2 galanin receptor 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 GALNR2 Galanin receptors 226 1998-12-17 2016-10-05 8811 ENSG00000182687 OTTHUMG00000167479 uc002jqm.3 AF040630 XM_011525427 CCDS11739 O43603 "9685625|9832121" MGI:1337018 RGD:9251670 GALR2 603691 objectId:244 +HGNC:4134 GALR3 galanin receptor 3 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 Galanin receptors 226 1998-12-17 2016-10-05 8484 ENSG00000128310 OTTHUMG00000150658 uc003aub.1 AF073799 NM_003614 CCDS13958 O60755 "9722565|9832121" MGI:1329003 RGD:2658 GALR3 603692 objectId:245 +HGNC:4135 GALT galactose-1-phosphate uridylyltransferase protein-coding gene gene with protein product Approved 9p13.3 09p13.3 2001-06-22 2016-10-05 2592 ENSG00000213930 OTTHUMG00000019836 uc003zve.5 M60091 NM_000155 "CCDS6565|CCDS59122" P07902 MGI:95638 RGD:1306483 Galactose-1-Phosphate Uridyl Transferase (GALT) Mutation Database|http://arup.utah.edu/database/GALT/GALT_welcome.php GALT 606999 122009 2.7.7.12 +HGNC:4136 GAMT guanidinoacetate N-methyltransferase protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PIG2|TP53I2" 1996-07-19 2014-11-19 2593 ENSG00000130005 OTTHUMG00000180095 uc002lsj.5 Z49878 NM_138924 "CCDS12064|CCDS45897" Q14353 "9570966|8547310" MGI:1098221 RGD:2659 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/vumc/home.php?select_db=GAMT GAMT 601240 122011 +HGNC:33982 GAMTP1 guanidinoacetate N-methyltransferase pseudogene 1 pseudogene pseudogene Approved 2q37.1 02q37.1 GAMTP guanidinoacetate N-methyltransferase pseudogene 2008-01-31 2010-01-19 2010-01-19 2014-11-18 391491 NG_007653.2 PGOHUM00000240553 +HGNC:37697 GAMTP2 guanidinoacetate N-methyltransferase pseudogene 2 pseudogene pseudogene Approved 13q13.2 13q13.2 2010-01-19 2014-11-19 100129452 ENSG00000231910 OTTHUMG00000016719 NG_016563 PGOHUM00000248359 +HGNC:4137 GAN gigaxonin protein-coding gene gene with protein product Approved 16q23.2 16q23.2 "GAN1|KLHL16" kelch-like family member 16 giant axonal neuropathy (gigaxonin) "Kelch like|BTB domain containing" "617|861" 1998-09-14 2008-08-01 2016-10-12 8139 ENSG00000261609 OTTHUMG00000137627 uc002fgo.4 AF291673 XM_017023734 CCDS10935 Q9H2C0 "9450783|11062483" MGI:1890619 RGD:1307766 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_242|http://www.lrg-sequence.org/LRG/LRG_242" GAN 605379 122015 +HGNC:4138 GANAB glucosidase II alpha subunit protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "GluII|G2AN|KIAA0088|GIIA" neutral alpha-glucosidase AB glucosidase, alpha; neutral AB 2001-06-22 2016-03-10 2016-03-10 23193 ENSG00000089597 OTTHUMG00000167696 uc001nub.5 AF144074 NM_198334 "CCDS8026|CCDS41656|CCDS60817|CCDS60818" Q14697 "6342981|3881423|10764838" MGI:1097667 RGD:1309775 GANAB 104160 461381 3.2.1.84 +HGNC:4139 GANC glucosidase alpha, neutral C protein-coding gene gene with protein product Approved 15q15.1 15q15.1 glucosidase, alpha; neutral C 2001-06-22 2016-03-30 2016-10-05 2595 ENSG00000214013 OTTHUMG00000130487 uc001zpi.4 AF545045 NM_198141 "CCDS10084|CCDS76737|CCDS76738" Q8TET4 "6995030|12370436" MGI:1923301 RGD:2660 GANC 104180 3.2.1.20 +HGNC:4140 GAP43 growth associated protein 43 protein-coding gene gene with protein product Approved 3q13.31 03q13.31 "B-50|PP46" "neuron growth-associated protein 43|neuromodulin|nerve growth-related peptide GAP43|axonal membrane protein GAP-43|protein F1|calmodulin-binding protein P-57|neural phosphoprotein B-50" 1990-07-10 2014-11-19 2596 ENSG00000172020 OTTHUMG00000133758 uc003ebq.3 NM_002045 "CCDS33830|CCDS46890" P17677 "3272162|8231732" MGI:95639 RGD:62071 GAP43 162060 +HGNC:4141 GAPDH glyceraldehyde-3-phosphate dehydrogenase protein-coding gene gene with protein product Approved 12p13.31 12p13.31 GAPD 2001-06-22 2005-05-06 2015-09-11 2597 ENSG00000111640 OTTHUMG00000137379 uc001qop.4 AF261085 NM_002046 "CCDS8549|CCDS58201" P04406 3170585 MGI:95640 RGD:2661 GAPDH 138400 1.2.1.12 +HGNC:33506 GAPDHL5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-16 +HGNC:4159 GAPDHP1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 pseudogene pseudogene Approved Xp11.4 Xp11.4 "GAPDP1|GAPDHL2|GAPDL2" glyceraldehyde-3-phosphate dehydrogenase-like 2 2001-06-22 2005-05-06 2014-11-19 2616 ENSG00000228232 OTTHUMG00000024098 M26873 NG_001123 6542494 PGOHUM00000241240 +HGNC:16577 GAPDHP2 glyceraldehyde-3-phosphate dehydrogenase pseudogene 2 pseudogene pseudogene Approved 20p12.1 20p12.1 dJ585I14.1 GAPDP2 2001-09-17 2005-05-06 2014-11-19 170516 ENSG00000236811 OTTHUMG00000031903 AL121782 NG_001038 PGOHUM00000247595 +HGNC:4160 GAPDHP14 glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 pseudogene pseudogene Approved 21q21.3 21q21.3 GAPDP14 2000-05-23 2005-05-06 2014-11-19 54050 ENSG00000236056 OTTHUMG00000078875 NG_009356 PGOHUM00000239160 +HGNC:13950 GAPDHP15 glyceraldehyde-3-phosphate dehydrogenase pseudogene 15 pseudogene pseudogene Approved 6p11.2 06p11.2 "GAPDH-Lp|b55C20.4" GAPDP15 2003-11-26 2005-05-06 2016-10-05 642317 ENSG00000214563 OTTHUMG00000014927 NG_006993 PGOHUM00000243220 +HGNC:23768 GAPDHP16 glyceraldehyde-3-phosphate dehydrogenase pseudogene 16 pseudogene pseudogene Approved 21q11.2 21q11.2 GAPDP16 2003-12-15 2005-05-06 2014-11-19 387491 ENSG00000225502 OTTHUMG00000074324 NG_009468 PGOHUM00000239147 +HGNC:37765 GAPDHP17 glyceraldehyde-3-phosphate dehydrogenase pseudogene 17 pseudogene pseudogene Approved Yq11.223 Yq11.223 GAPDHP18 glyceraldehyde 3 phosphate dehydrogenase pseudogene 18 2010-02-16 2016-10-05 360008 ENSG00000229551 OTTHUMG00000036538 NG_002925 12815422 PGOHUM00000234007 +HGNC:23947 GAPDHP19 glyceraldehyde 3 phosphate dehydrogenase pseudogene 19 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-02-17 2014-11-19 140028 ENSG00000234529 OTTHUMG00000036502 NG_002924 12815422 PGOHUM00000234001 +HGNC:37772 GAPDHP20 glyceraldehyde 3 phosphate dehydrogenase pseudogene 20 pseudogene pseudogene Approved 1p35.1 01p35.1 2010-02-24 2014-11-19 343338 ENSG00000224333 OTTHUMG00000007747 NG_009347 PGOHUM00000243961 +HGNC:37773 GAPDHP21 glyceraldehyde 3 phosphate dehydrogenase pseudogene 21 pseudogene pseudogene Approved 10q21.1 10q21.1 2010-02-24 2014-11-19 389970 ENSG00000236993 OTTHUMG00000018260 NG_009342 PGOHUM00000238494 +HGNC:37774 GAPDHP22 glyceraldehyde 3 phosphate dehydrogenase pseudogene 22 pseudogene pseudogene Approved 13q32.3 13q32.3 2010-02-24 2014-11-19 390421 ENSG00000234005 OTTHUMG00000017258 NG_011332 PGOHUM00000248477 +HGNC:37775 GAPDHP23 glyceraldehyde 3 phosphate dehydrogenase pseudogene 23 pseudogene pseudogene Approved 1p12 01p12 2010-02-24 2014-11-19 391075 ENSG00000235595 OTTHUMG00000012524 NG_009339 PGOHUM00000244166 +HGNC:37776 GAPDHP24 glyceraldehyde 3 phosphate dehydrogenase pseudogene 24 pseudogene pseudogene Approved 1q41 01q41 2010-02-24 2014-11-19 391162 ENSG00000185221 OTTHUMG00000037014 NG_009350 PGOHUM00000245205 +HGNC:37777 GAPDHP25 glyceraldehyde 3 phosphate dehydrogenase pseudogene 25 pseudogene pseudogene Approved 2p22.2 02p22.2 2010-02-24 2014-11-19 391367 ENSG00000213594 OTTHUMG00000152298 NG_006131 PGOHUM00000240624 +HGNC:37778 GAPDHP26 glyceraldehyde 3 phosphate dehydrogenase pseudogene 26 pseudogene pseudogene Approved 9q31.1 09q31.1 2010-02-24 2010-09-22 392374 ENSG00000229541 OTTHUMG00000020371 NG_009355 PGOHUM00000250531 +HGNC:37779 GAPDHP27 glyceraldehyde 3 phosphate dehydrogenase pseudogene 27 pseudogene pseudogene Approved 1p12 01p12 2010-02-24 2014-11-19 401960 ENSG00000239873 OTTHUMG00000012956 NG_009337 PGOHUM00000244169 +HGNC:37780 GAPDHP28 glyceraldehyde 3 phosphate dehydrogenase pseudogene 28 pseudogene pseudogene Approved 10q23.32 10q23.32 2010-02-24 2014-11-19 441572 ENSG00000213449 OTTHUMG00000018746 NG_009344 PGOHUM00000262850 +HGNC:37781 GAPDHP29 glyceraldehyde 3 phosphate dehydrogenase pseudogene 29 pseudogene pseudogene Approved 1p21.3 01p21.3 2010-02-24 2014-11-19 441893 ENSG00000178596 OTTHUMG00000010649 NG_009349 PGOHUM00000244801 +HGNC:37782 GAPDHP30 glyceraldehyde 3 phosphate dehydrogenase pseudogene 30 pseudogene pseudogene Approved 8q22.1 08q22.1 2010-02-24 2014-11-19 643228 NG_009345 PGOHUM00000249437 +HGNC:37783 GAPDHP31 glyceraldehyde 3 phosphate dehydrogenase pseudogene 31 pseudogene pseudogene Approved 12p13.31 12p13.31 2010-02-24 2013-02-27 643739 ENSG00000235868 OTTHUMG00000160000 NG_009353 PGOHUM00000251011 +HGNC:37784 GAPDHP32 glyceraldehyde 3 phosphate dehydrogenase pseudogene 32 pseudogene pseudogene Approved 1p12 01p12 2010-02-24 2013-02-27 644213 ENSG00000226443 OTTHUMG00000012954 NG_011343 PGOHUM00000259471 +HGNC:37785 GAPDHP33 glyceraldehyde 3 phosphate dehydrogenase pseudogene 33 pseudogene pseudogene Approved 1p12 01p12 2010-02-24 2014-11-19 644237 ENSG00000240244 OTTHUMG00000012958 NG_009336 PGOHUM00000244170 +HGNC:37786 GAPDHP34 glyceraldehyde 3 phosphate dehydrogenase pseudogene 34 pseudogene pseudogene Approved 13q13.3 13q13.3 2010-02-24 2014-11-19 646877 ENSG00000235306 OTTHUMG00000016736 NG_011461 PGOHUM00000248567 +HGNC:37789 GAPDHP35 glyceraldehyde 3 phosphate dehydrogenase pseudogene 35 pseudogene pseudogene Approved 16p12.1 16p12.1 2010-02-24 2016-10-05 647001 ENSG00000250982 OTTHUMG00000160047 NG_009340 PGOHUM00000293483 +HGNC:37790 GAPDHP36 glyceraldehyde 3 phosphate dehydrogenase pseudogene 36 pseudogene pseudogene Approved 3q26.33 03q26.33 2010-02-24 2014-11-19 647249 ENSG00000213158 OTTHUMG00000157862 NG_016486 PGOHUM00000238277 +HGNC:37791 GAPDHP37 glyceraldehyde 3 phosphate dehydrogenase pseudogene 37 pseudogene pseudogene Approved 22q13.2 22q13.2 2010-02-24 2014-11-19 651258 ENSG00000231907 OTTHUMG00000151145 NG_006079 PGOHUM00000246336 +HGNC:37792 GAPDHP38 glyceraldehyde 3 phosphate dehydrogenase pseudogene 38 pseudogene pseudogene Approved 19q13.32 19q13.32 2010-02-24 2016-07-25 729493 ENSG00000249210 OTTHUMG00000160067 NG_009334 PGOHUM00000295394 +HGNC:37796 GAPDHP39 glyceraldehyde 3 phosphate dehydrogenase pseudogene 39 pseudogene pseudogene Approved 3q22.3 03q22.3 2010-02-24 2014-11-19 100128589 ENSG00000239207 OTTHUMG00000159890 NG_009351 PGOHUM00000238211 +HGNC:37797 GAPDHP40 glyceraldehyde 3 phosphate dehydrogenase pseudogene 40 pseudogene pseudogene Approved 5q33.3 05q33.3 2010-02-24 2014-11-18 100131743 ENSG00000248626 OTTHUMG00000159985 NG_009333 PGOHUM00000235443 +HGNC:37798 GAPDHP41 glyceraldehyde 3 phosphate dehydrogenase pseudogene 41 pseudogene pseudogene Approved 6q11.1 06q11.1 2010-02-24 2015-02-03 100131935 ENSG00000277172 OTTHUMG00000188334 NG_007298 PGOHUM00000301402 +HGNC:37799 GAPDHP42 glyceraldehyde 3 phosphate dehydrogenase pseudogene 42 pseudogene pseudogene Approved 6q13 06q13 2010-02-24 2014-11-19 100240707 ENSG00000219881 OTTHUMG00000014984 NG_009328 PGOHUM00000243663 +HGNC:37800 GAPDHP43 glyceraldehyde 3 phosphate dehydrogenase pseudogene 43 pseudogene pseudogene Approved 15q15.3 15q15.3 2010-02-24 2014-11-19 100240708 NG_009331 PGOHUM00000247102 +HGNC:37801 GAPDHP44 glyceraldehyde 3 phosphate dehydrogenase pseudogene 44 pseudogene pseudogene Approved 12q14.2 12q14.2 2010-02-24 2014-11-19 100240709 ENSG00000213352 OTTHUMG00000160001 NG_009335 PGOHUM00000239823 +HGNC:37802 GAPDHP45 glyceraldehyde 3 phosphate dehydrogenase pseudogene 45 pseudogene pseudogene Approved 10p13 10p13 2010-02-24 2014-11-19 100240710 ENSG00000228312 OTTHUMG00000017726 NG_009343 PGOHUM00000238364 +HGNC:37804 GAPDHP46 glyceraldehyde 3 phosphate dehydrogenase pseudogene 46 pseudogene pseudogene Approved 1p22.1 01p22.1 2010-02-24 2014-11-19 100240711 ENSG00000224678 OTTHUMG00000010290 NG_009348 PGOHUM00000244099 +HGNC:37803 GAPDHP47 glyceraldehyde 3 phosphate dehydrogenase pseudogene 47 pseudogene pseudogene Approved 3q24 03q24 2010-02-24 2014-11-19 100240712 ENSG00000243033 OTTHUMG00000159382 NG_009352 PGOHUM00000237801 +HGNC:37805 GAPDHP48 glyceraldehyde 3 phosphate dehydrogenase pseudogene 48 pseudogene pseudogene Approved 2p25.3 02p25.3 2010-02-24 2014-11-18 100240713 ENSG00000232718 OTTHUMG00000151489 NG_009354 PGOHUM00000239967 +HGNC:38555 GAPDHP49 glyceraldehyde 3 phosphate dehydrogenase pseudogene 49 pseudogene pseudogene Approved 2q36.1 02q36.1 2010-06-17 2014-11-18 100421189 ENSG00000234285 OTTHUMG00000153391 NG_023664 PGOHUM00000240532 +HGNC:38556 GAPDHP50 glyceraldehyde 3 phosphate dehydrogenase pseudogene 50 pseudogene pseudogene Approved 3p11.1 03p11.1 2010-06-17 2014-11-19 100421236 ENSG00000241861 OTTHUMG00000159042 NG_025600 PGOHUM00000237675 +HGNC:38557 GAPDHP51 glyceraldehyde 3 phosphate dehydrogenase pseudogene 51 pseudogene pseudogene Approved 1p32.3 01p32.3 2010-06-17 2014-11-19 100421271 ENSG00000236973 OTTHUMG00000008961 NG_026939 PGOHUM00000244025 +HGNC:38558 GAPDHP52 glyceraldehyde 3 phosphate dehydrogenase pseudogene 52 pseudogene pseudogene Approved 13q12.11 13q12.11 2010-06-17 2014-11-19 100421313 ENSG00000235076 OTTHUMG00000016542 NG_024895 PGOHUM00000248521 +HGNC:38559 GAPDHP53 glyceraldehyde 3 phosphate dehydrogenase pseudogene 53 pseudogene pseudogene Approved 20p11.21 20p11.21 2010-06-17 2014-11-19 100421318 ENSG00000234069 OTTHUMG00000032100 NG_025000 PGOHUM00000247614 +HGNC:38560 GAPDHP54 glyceraldehyde 3 phosphate dehydrogenase pseudogene 54 pseudogene pseudogene Approved 20q13.12 20q13.12 2010-06-17 2014-11-19 100421319 ENSG00000226769 OTTHUMG00000032662 NG_025009 PGOHUM00000247666 +HGNC:38561 GAPDHP55 glyceraldehyde 3 phosphate dehydrogenase pseudogene 55 pseudogene pseudogene Approved 15q15.3 15q15.3 2010-06-17 2014-11-19 100421324 ENSG00000224055 OTTHUMG00000060474 NG_025379 PGOHUM00000247101 +HGNC:38562 GAPDHP56 glyceraldehyde 3 phosphate dehydrogenase pseudogene 56 pseudogene pseudogene Approved 4q28.3 04q28.3 2010-06-17 2014-11-18 100421232 ENSG00000249018 OTTHUMG00000159979 NG_025161 PGOHUM00000245696 +HGNC:38563 GAPDHP57 glyceraldehyde 3 phosphate dehydrogenase pseudogene 57 pseudogene pseudogene Approved 2p12 02p12 2010-06-17 2014-11-18 100421188 ENSG00000236167 OTTHUMG00000152942 NG_023572 PGOHUM00000240101 +HGNC:4142 GAPDHP58 glyceraldehyde 3 phosphate dehydrogenase pseudogene 58 pseudogene pseudogene Approved 1p12 01p12 "GAPDL1|GAPDHL1" "glyceraldehyde-3-phosphate dehydrogenase-like 1|glyceraldehyde-3-phosphate dehydrogenase-like 1, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 391077 ENSG00000229570 OTTHUMG00000012527 NG_009338 2793178 PGOHUM00000244167 +HGNC:4152 GAPDHP59 glyceraldehyde-3-phosphate dehydrogenase pseudogene 59 pseudogene pseudogene Approved 2q32.1 02q32.1 "GAPDL3|GAPDHL3" "glyceraldehyde-3-phosphate dehydrogenase-like 3|glyceraldehyde-3-phosphate dehydrogenase-like 3, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 645024 ENSG00000231739 OTTHUMG00000154269 NG_006132 2793178 PGOHUM00000241042 +HGNC:4153 GAPDHP60 glyceraldehyde-3-phosphate dehydrogenase pseudogene 60 pseudogene pseudogene Approved 4q22.1 04q22.1 "GAPDL4|GAPDHL4" "glyceraldehyde-3-phosphate dehydrogenase-like 4|glyceraldehyde-3-phosphate dehydrogenase-like 4, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 2601 ENSG00000248180 OTTHUMG00000159978 NG_003011 2793178 PGOHUM00000245994 +HGNC:4155 GAPDHP61 glyceraldehyde 3 phosphate dehydrogenase pseudogene 61 pseudogene pseudogene Approved 15q22.31 15q22.31 "GAPDL6|GAPDHL6" "glyceraldehyde-3-phosphate dehydrogenase-like 6|glyceraldehyde-3-phosphate dehydrogenase-like 6, pseudogene" 1990-02-05 2010-10-14 2010-10-14 2014-11-19 729403 ENSG00000248415 OTTHUMG00000160045 NG_009327 2793178 PGOHUM00000246819 +HGNC:4156 GAPDHP62 glyceraldehyde 3 phosphate dehydrogenase pseudogene 62 pseudogene pseudogene Approved 8q22.3 08q22.3 "GAPDL7|GAPDHL7" "glyceraldehyde-3-phosphate dehydrogenase-like 7|glyceraldehyde-3-phosphate dehydrogenase-like 7, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 100128961 ENSG00000251013 OTTHUMG00000159995 NG_009346 2793178 PGOHUM00000249457 +HGNC:4157 GAPDHP63 glyceraldehyde 3 phosphate dehydrogenase pseudogene 63 pseudogene pseudogene Approved 6q14.1 06q14.1 "GAPDL8|GAPDHL8" "glyceraldehyde-3-phosphate dehydrogenase-like 8|glyceraldehyde-3-phosphate dehydrogenase-like 8, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 442231 ENSG00000218582 OTTHUMG00000015085 NG_006998 2793178 PGOHUM00000243261 +HGNC:4158 GAPDHP64 glyceraldehyde-3-phosphate dehydrogenase pseudogene 64 pseudogene pseudogene Approved 1p13.1 01p13.1 "GAPDL9|GAPDHL9" "glyceraldehyde-3-phosphate dehydrogenase-like 9|glyceraldehyde-3-phosphate dehydrogenase-like 9, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 391069 ENSG00000231072 OTTHUMG00000022755 NG_006130 2793178 PGOHUM00000244156 +HGNC:4143 GAPDHP65 glyceraldehyde 3 phosphate dehydrogenase pseudogene 65 pseudogene pseudogene Approved Xp11.3 Xp11.3 "GAPDL10|GAPDHL10" "glyceraldehyde-3-phosphate dehydrogenase-like 10|glyceraldehyde-3-phosphate dehydrogenase-like 10, pseudogene" 1988-08-31 2010-10-14 2010-10-14 2014-11-18 389849 ENSG00000235587 OTTHUMG00000021418 NG_006129 2793178 PGOHUM00000241263 +HGNC:4144 GAPDHP66 glyceraldehyde-3-phosphate dehydrogenase pseudogene 66 pseudogene pseudogene Approved 18p11.31 18p11.31 "GAPDL11|GAPDHL11" "glyceraldehyde-3-phosphate dehydrogenase-like 11|glyceraldehyde-3-phosphate dehydrogenase-like 11, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 645256 ENSG00000250933 OTTHUMG00000160055 NG_007000 2793178 PGOHUM00000234845 +HGNC:4145 GAPDHP67 glyceraldehyde 3 phosphate dehydrogenase pseudogene 67 pseudogene pseudogene Approved Xq26.3 Xq26.3 "GAPDL12|GAPDHL12" "glyceraldehyde-3-phosphate dehydrogenase-like 12|glyceraldehyde-3-phosphate dehydrogenase-like 12, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 2609 ENSG00000219930 OTTHUMG00000022501 NG_006127 2793178 PGOHUM00000263344 +HGNC:4146 GAPDHP68 glyceraldehyde 3 phosphate dehydrogenase pseudogene 68 pseudogene pseudogene Approved 7p21.3 07p21.3 "GAPDL13|GAPDHL13" "glyceraldehyde-3-phosphate dehydrogenase-like 13|glyceraldehyde-3-phosphate dehydrogenase-like 13, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-18 100132601 ENSG00000233876 OTTHUMG00000151930 NG_009341 2793178 PGOHUM00000233123 +HGNC:4147 GAPDHP69 glyceraldehyde 3 phosphate dehydrogenase pseudogene 69 pseudogene pseudogene Approved 13q12.3 13q12.3 "GAPDL14|GAPDHL14" "glyceraldehyde-3-phosphate dehydrogenase-like 14|glyceraldehyde-3-phosphate dehydrogenase-like 14, pseudogene" 1989-06-30 2010-10-14 2010-10-14 2014-11-18 2611 ENSG00000223460 OTTHUMG00000016654 NG_009332 2793178 PGOHUM00000248556 +HGNC:4148 GAPDHP70 glyceraldehyde 3 phosphate dehydrogenase pseudogene 70 pseudogene pseudogene Approved 11q14.2 11q14.2 "GAPDL15|GAPDHL15" "glyceraldehyde-3-phosphate dehydrogenase-like 15|glyceraldehyde-3-phosphate dehydrogenase-like 15, pseudogene" 1989-06-30 2010-10-14 2010-10-14 2014-11-19 642259 ENSG00000249489 OTTHUMG00000159997 NG_007004 2793178 PGOHUM00000242403 +HGNC:4149 GAPDHP71 glyceraldehyde-3-phosphate dehydrogenase pseudogene 71 pseudogene pseudogene Approved 5q35.2 05q35.2 "GAPDL16|GAPDHL16" "glyceraldehyde-3-phosphate dehydrogenase-like 16|glyceraldehyde-3-phosphate dehydrogenase-like 16, pseudogene" 2001-06-22 2010-10-14 2010-10-14 2014-11-19 2613 ENSG00000213376 OTTHUMG00000159984 NG_003027 PGOHUM00000235837 +HGNC:22955 GAPDHP72 glyceraldehyde-3-phosphate dehydrogenase pseudogene 72 pseudogene pseudogene Approved 6q27 06q27 "GAPDL18|GAPDHL18" "glyceraldehyde-3-phosphate dehydrogenase-like 18|glyceraldehyde-3-phosphate dehydrogenase-like 18, pseudogene" 2003-07-30 2010-10-14 2010-10-14 2014-11-18 346085 ENSG00000216624 OTTHUMG00000015992 NG_009329 PGOHUM00000243846 +HGNC:22956 GAPDHP73 glyceraldehyde-3-phosphate dehydrogenase pseudogene 73 pseudogene pseudogene Approved 6q23.3 06q23.3 "GAPDL19|GAPDHL19" "glyceraldehyde-3-phosphate dehydrogenase-like 19|glyceraldehyde-3-phosphate dehydrogenase-like 19, pseudogene" 2003-07-30 2010-10-14 2010-10-14 2014-11-18 442262 ENSG00000226540 OTTHUMG00000015633 NG_007007 PGOHUM00000243385 +HGNC:50647 GAPDHP74 glyceraldehyde-3-phosphate dehydrogenase pseudogene 74 pseudogene pseudogene Approved 1p12 01p12 2014-06-03 2014-06-03 391073 ENSG00000232780 OTTHUMG00000012523 NG_022738 PGOHUM00000244165 +HGNC:50648 GAPDHP75 glyceraldehyde-3-phosphate dehydrogenase pseudogene 75 pseudogene pseudogene Approved 1q31.1 01q31.1 2014-06-03 2014-06-03 100652918 ENSG00000226196 OTTHUMG00000035543 NG_032724 PGOHUM00000263033 +HGNC:50649 GAPDHP76 glyceraldehyde-3-phosphate dehydrogenase pseudogene 76 pseudogene pseudogene Approved 19p13.2 19p13.2 2014-06-03 2014-06-03 100287725 ENSG00000249840 OTTHUMG00000160071 NG_028151 PGOHUM00000263010 +HGNC:24864 GAPDHS glyceraldehyde-3-phosphate dehydrogenase, spermatogenic protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "GAPDH-2|GAPD2" GAPDS 2004-02-10 2005-05-06 2016-10-05 26330 ENSG00000105679 OTTHUMG00000182298 uc002oaf.2 AJ005371 NM_014364 CCDS12465 O14556 10714828 MGI:95653 RGD:620150 GAPDHS 609169 +HGNC:51308 GAPLINC gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 TCONS_00026238 gastric adenocarcinoma predictive long intergenic noncoding RNA LINC01540 long intergenic non-protein coding RNA 1540 Long non-coding RNAs 788 2014-09-26 2015-02-12 2015-02-12 2015-02-12 100505592 ENSG00000266835 OTTHUMG00000178331 "BM782281|AJ707365" NR_110429 25277524 +HGNC:26588 GAPT GRB2 binding adaptor protein, transmembrane protein-coding gene gene with protein product Approved 5q11.2 05q11.2 FLJ33641 GRB2-binding transmembrane adaptor C5orf29 chromosome 5 open reading frame 29 2006-08-11 2008-10-07 2016-09-08 2016-09-08 202309 ENSG00000175857 OTTHUMG00000131219 uc003jro.2 AK090960 NM_152687 CCDS3975 Q8N292 MGI:3608341 RGD:1586621 GAPT +HGNC:23375 GAPVD1 GTPase activating protein and VPS9 domains 1 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "DKFZP434C212|KIAA1521" VPS9 domain containing 928 2005-03-22 2016-10-05 26130 ENSG00000165219 OTTHUMG00000020678 uc004bps.4 XM_011518499 "CCDS65130|CCDS65131|CCDS65132|CCDS35138|CCDS83413|CCDS83414" Q14C86 MGI:1913941 RGD:1307479 GAPVD1 611714 +HGNC:14264 GAR1 GAR1 ribonucleoprotein protein-coding gene gene with protein product Approved 4q25 04q25 NOLA1 "nucleolar protein family A, member 1 (H/ACA small nucleolar RNPs)|GAR1 ribonucleoprotein homolog (yeast)" H/ACA ribonucleoprotein complex 1221 2001-02-06 2008-10-13 2016-02-17 2016-02-17 54433 ENSG00000109534 OTTHUMG00000161108 uc003hzu.4 AJ276003 NM_018983 CCDS34050 Q9NY12 10757788 MGI:1930948 RGD:1563995 GAR1 606468 +HGNC:26136 GAREM1 GRB2 associated regulator of MAPK1 subtype 1 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 FLJ21610 Grb2-associated and regulator of Erk/MAPK "C18orf11|FAM59A|GAREM" "chromosome 18 open reading frame 11|family with sequence similarity 59, member A|GRB2 associated, regulator of MAPK1" 2004-01-13 2015-11-06 2015-11-19 2015-11-19 64762 ENSG00000141441 OTTHUMG00000132273 uc002kxk.3 AK025263 NM_022751 "CCDS11905|CCDS56057" Q9H706 19509291 MGI:2685790 RGD:1591842 +HGNC:27172 GAREM2 GRB2 associated regulator of MAPK1 subtype 2 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "KIAA2038|FLJ00375" "FAM59B|GAREML" "family with sequence similarity 59, member B|GRB2 associated, regulator of MAPK1-like" 2005-04-07 2015-11-06 2015-11-19 2015-11-19 150946 ENSG00000157833 OTTHUMG00000151935 uc002rgw.2 "AK090454|AB015349|AB124552" NM_001168241 "CCDS54336|CCDS54337" Q75VX8 24003223 MGI:2685290 RGD:1597138 +HGNC:25425 GARNL3 GTPase activating Rap/RanGAP domain like 3 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "DKFZp761J1523|bA356B19.1" "GTPase activating RANGAP domain-like 3|GTPase activating Rap/RanGAP domain-like 3" 2004-02-24 2016-03-15 2016-10-05 84253 ENSG00000136895 OTTHUMG00000020700 uc011mae.3 BC034983 NM_032293 "CCDS6869|CCDS69663" Q5VVW2 11230166 MGI:2139309 RGD:1564019 GARNL3 +HGNC:4162 GARS glycyl-tRNA synthetase protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "GlyRS|DSMAV|SMAD1" glycine tRNA ligase CMT2D Charcot-Marie-Tooth neuropathy 2D Aminoacyl tRNA synthetases, Class II 132 1995-03-21 2004-02-13 2016-10-12 2617 ENSG00000106105 OTTHUMG00000152769 uc003tbm.4 AK074524 NM_002047 CCDS43564 P41250 "8595897|8872480" MGI:2449057 RGD:1307856 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_243|http://www.lrg-sequence.org/LRG/LRG_243" GARS 600287 122022 6.1.1.14 +HGNC:50480 GARSP1 glycyl-tRNA synthetase pseudogene 1 pseudogene pseudogene Approved 17q22 17q22 2014-05-06 2014-05-06 100419764 ENSG00000262135 OTTHUMG00000177857 NG_026193 PGOHUM00000237112 +HGNC:4163 GART phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "PRGS|PGFT" 2001-06-22 2014-11-18 2618 ENSG00000159131 OTTHUMG00000065628 uc002yry.4 M32082 NM_000819 "CCDS13627|CCDS13628" P22102 2050105 MGI:95654 RGD:1308717 GART 138440 objectId:2612 "2.1.2.2|6.3.3.1|6.3.4.13" +HGNC:4165 GAS1 growth arrest specific 1 protein-coding gene gene with protein product Approved 9q21.33 09q21.33 Growth arrest-specific gene-1 1993-06-23 2015-11-23 2016-10-05 2619 ENSG00000180447 OTTHUMG00000020141 uc004aox.5 NM_002048 CCDS6674 P54826 8307588 MGI:95655 RGD:1586820 GAS1 139185 285758 +HGNC:52261 GAS1RR GAS1 adjacent regulatory RNA non-coding RNA RNA, long non-coding Approved 9q21.33 09q21.33 LncRNA-Hh Long non-coding RNAs 788 2015-11-05 2015-11-05 100506834 ENSG00000226237 OTTHUMG00000020143 NR_049794 26418365 +HGNC:4167 GAS2 growth arrest specific 2 protein-coding gene gene with protein product Approved 11p14.3 11p14.3 1997-08-28 2015-11-23 2015-11-23 2620 ENSG00000148935 OTTHUMG00000166071 uc009yie.4 BC040470 NM_177553 CCDS7858 O43903 9521882 MGI:95657 RGD:1563167 GAS2 602835 +HGNC:16955 GAS2L1 growth arrest specific 2 like 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 GAR22 2002-04-30 2015-11-23 2015-11-23 10634 ENSG00000185340 OTTHUMG00000151108 uc032qlb.2 BC001782 NM_006478 "CCDS63438|CCDS74840" Q99501 "8975699|12584248|1607387" MGI:1926176 RGD:1311206 GAS2L1 602128 +HGNC:50293 GAS2L1P1 growth arrest specific 2 like 1 pseudogene 1 pseudogene pseudogene Approved 9p13.1 09p13.1 2014-04-02 2015-11-23 2015-11-23 101927222 ENSG00000229511 OTTHUMG00000019942 PGOHUM00000236035 +HGNC:27986 GAS2L1P2 growth arrest specific 2 like 1 pseudogene 2 pseudogene pseudogene Approved 9q22.33 09q22.33 2014-04-02 2015-11-23 2015-11-23 340508 ENSG00000228376 OTTHUMG00000020312 NR_002942 12477932 PGOHUM00000304001 +HGNC:24846 GAS2L2 growth arrest specific 2 like 2 protein-coding gene gene with protein product Approved 17q12 17q12 GAR17 2004-06-28 2015-11-23 2016-10-05 246176 ENSG00000270765 OTTHUMG00000188386 uc002hjv.2 AF508784 NM_139285 CCDS11298 Q8NHY3 12584248 MGI:3652048 RGD:1307868 GAS2L2 611398 +HGNC:27475 GAS2L3 growth arrest specific 2 like 3 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 2004-06-28 2015-11-23 2015-11-23 283431 ENSG00000139354 OTTHUMG00000170439 uc001thu.4 AK095594 NM_174942 "CCDS9079|CCDS76590" Q86XJ1 MGI:1918780 RGD:1594151 GAS2L3 +HGNC:16355 GAS5 growth arrest specific 5 (non-protein coding) non-coding RNA RNA, long non-coding Approved 1q25.1 01q25.1 "SNHG2|NCRNA00030" "small nucleolar RNA host gene (non-protein coding) 2|non-protein coding RNA 30" Long non-coding RNAs 788 2001-08-02 2015-11-23 2015-11-23 60674 ENSG00000234741 OTTHUMG00000037216 uc057nkb.1 BC038733 NR_002578 "9819378|23726844" MGI:95659 RGD:621549 608280 GAS5 +HGNC:44119 GAS5-AS1 GAS5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q25.1 01q25.1 GAS5 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2013-02-15 100506046 ENSG00000270084 OTTHUMG00000184089 uc021pfa.1 AF088026 NR_037605 +HGNC:4168 GAS6 growth arrest specific 6 protein-coding gene gene with protein product Approved 13q34 13q34 "AXSF|FLJ34709|DKFZp666G247" AXL stimulatory factor AXLLG AXL receptor tyrosine kinase ligand Gla domain containing 1250 1994-12-19 2015-11-23 2015-11-23 2621 ENSG00000183087 OTTHUMG00000017395 uc001vud.4 NM_000820 CCDS45072 Q14393 8336730 MGI:95660 RGD:61913 GAS6 600441 +HGNC:39826 GAS6-AS1 GAS6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 GAS6 antisense RNA 1 (non-protein coding) 2011-03-30 2012-08-15 2014-11-18 650669 ENSG00000233695 OTTHUMG00000017396 uc031qno.3 NR_044995 23979857 +HGNC:43694 GAS6-AS2 GAS6 antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 13q34 13q34 FLJ44054 2012-09-10 2012-09-12 2014-01-23 100506394 ENSG00000272695 OTTHUMG00000186446 uc021rmw.2 AK126042 NR_024609 +HGNC:4169 GAS7 growth arrest specific 7 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "KIAA0394|MGC1348" F-BAR domain containing 1288 1998-10-19 2015-11-23 2015-11-23 8522 ENSG00000007237 OTTHUMG00000177945 uc002gmg.2 AB007854 "NM_003644|NM_201432|NM_201433" "CCDS11152|CCDS42263|CCDS45611|CCDS58518" O60861 9736752 MGI:1202388 RGD:621550 GAS7 603127 +HGNC:4166 GAS8 growth arrest specific 8 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 DRC4 GAS11 growth arrest-specific 11 Dynein regulatory complex 981 1998-03-23 2003-01-17 2015-11-23 2015-11-23 2622 ENSG00000141013 OTTHUMG00000138988 uc002fqi.1 AF050079 XM_005256304 "CCDS10992|CCDS67101|CCDS73932" O95995 9790751 MGI:1202386 RGD:1307817 GAS8 605178 442934 +HGNC:1197 GAS8-AS1 GAS8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16q24.3 16q24.3 C16orf3 chromosome 16 open reading frame 3 1998-08-06 2014-10-01 2014-10-01 2014-11-19 750 ENSG00000221819 OTTHUMG00000172804 AF050080 NR_122031 O95177 9790751 605179 463825 +HGNC:4164 GAST gastrin protein-coding gene gene with protein product Approved 17q21.2 17q21.2 preprogastrin GAS Endogenous ligands 542 2001-06-22 2005-06-14 2005-06-14 2015-08-25 2520 ENSG00000184502 OTTHUMG00000133496 uc002hxl.3 NM_000805 CCDS11404 P01350 MGI:104768 RGD:2662 GAST 137250 +HGNC:4170 GATA1 GATA binding protein 1 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "ERYF1|NFE1|GATA-1|NF-E1" nuclear factor, erythroid 1 GF1 "GATA-binding protein 1 (globin transcription factor 1)|globin transcription factor 1" GATA zinc finger domain containing 82 1990-09-10 2016-02-15 2016-10-12 2623 ENSG00000102145 OTTHUMG00000021504 uc004dkq.5 X17254 NM_002049 CCDS14305 P15976 1999341 MGI:95661 RGD:2663 LRG_559|http://www.lrg-sequence.org/LRG/LRG_559 GATA1 305371 122028 +HGNC:4171 GATA2 GATA binding protein 2 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 NFE1B GATA-binding protein 2 GATA zinc finger domain containing 82 1992-11-03 2001-11-28 2016-10-12 2624 ENSG00000179348 OTTHUMG00000159689 uc003eko.3 AF169253 NM_032638 "CCDS3049|CCDS46903" P23769 1714909 MGI:95662 RGD:2664 LRG_295|http://www.lrg-sequence.org/LRG/LRG_295 GATA2 137295 274222 +HGNC:51108 GATA2-AS1 GATA2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 2014-07-29 2014-07-29 101927167 ENSG00000244300 OTTHUMG00000159693 NR_125398 +HGNC:4172 GATA3 GATA binding protein 3 protein-coding gene gene with protein product Approved 10p14 10p14 HDR GATA-binding protein 3 GATA zinc finger domain containing 82 1992-11-03 2001-11-28 2016-10-05 2625 ENSG00000107485 OTTHUMG00000017640 uc001ika.4 X55122 NM_001002295 "CCDS7083|CCDS31143" P23771 "2050118|15087456" MGI:95663 RGD:621250 GATA3 131320 122033 +HGNC:33786 GATA3-AS1 GATA3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p14 10p14 2012-12-04 2015-04-30 399717 ENSG00000197308 OTTHUMG00000156966 uc001ijx.1 "BC036297|AK128810" NR_104327 23870669 +HGNC:4173 GATA4 GATA binding protein 4 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 GATA-binding protein 4 GATA zinc finger domain containing 82 1994-11-30 2001-11-28 2016-10-05 2626 ENSG00000136574 OTTHUMG00000090800 uc003wuc.3 AK097060 NM_002052 "CCDS5983|CCDS78303|CCDS78304" P43694 7665171 MGI:95664 RGD:2665 GATA4 600576 122035 +HGNC:15802 GATA5 GATA binding protein 5 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "bB379O24.1|GATAS" GATA-binding protein 5 GATA zinc finger domain containing 82 2001-09-17 2001-11-28 2015-09-11 140628 ENSG00000130700 OTTHUMG00000032919 uc002ycx.1 "BC047790|BC117356" NM_080473 CCDS13499 Q9BWX5 9566909 MGI:109497 RGD:1561365 GATA5 611496 304191 +HGNC:4174 GATA6 GATA binding protein 6 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 GATA-binding protein 6 GATA zinc finger domain containing 82 1996-10-11 2001-11-28 2016-10-05 2627 ENSG00000141448 OTTHUMG00000131767 uc002ktt.2 U66075 NM_005257 CCDS11872 Q92908 8975704 MGI:107516 RGD:2666 GATA6 601656 291853 +HGNC:48840 GATA6-AS1 GATA6 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 18q11.2 18q11.2 locus5689 locus 5689 2013-06-14 2014-01-15 100128893 ENSG00000266010 OTTHUMG00000179440 BM742401 NR_102763 "23846333|23382218" +HGNC:29941 GATAD1 GATA zinc finger domain containing 1 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 "ODAG|RG083M05.2|FLJ22489" ocular development associated gene "GATA zinc finger domain containing|EMSY complex" "82|1243" 2005-03-31 2016-10-12 57798 ENSG00000157259 OTTHUMG00000131201 uc003ulx.3 NM_021167 CCDS5625 Q8WUU5 12062807 MGI:1914460 RGD:1562004 LRG_746|http://www.lrg-sequence.org/LRG/LRG_746 GATAD1 614518 304455 +HGNC:29989 GATAD2A GATA zinc finger domain containing 2A protein-coding gene gene with protein product Approved 19p13.11 19p13.11 p66alpha p66 alpha GATA zinc finger domain containing 82 2005-03-31 2014-11-19 54815 ENSG00000167491 OTTHUMG00000152541 uc010xqt.3 AL390164 NM_017660 "CCDS12402|CCDS77270" Q86YP4 12183469 MGI:2384585 RGD:1310596 GATAD2A 614997 +HGNC:30778 GATAD2B GATA zinc finger domain containing 2B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 P66beta transcription repressor p66 beta component of the MeCP1 complex GATA zinc finger domain containing 82 2005-03-31 2014-11-19 57459 ENSG00000143614 OTTHUMG00000037162 uc001fdb.5 AF411836 NM_020699 CCDS1054 Q8WXI9 "10574461|11756549" MGI:2443225 RGD:1308533 GATAD2B 614998 318860 +HGNC:8849 GATB glutamyl-tRNA amidotransferase subunit B protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "PET112L|PET112" "PET112 (yeast homolog)-like|glutamyl-tRNA(Gln) amidotransferase, subunit B" 1998-07-03 2014-08-04 2016-06-21 2016-06-21 5188 ENSG00000059691 OTTHUMG00000161672 AF026851 XM_005263063 CCDS3776 O75879 "9878253|19805282" MGI:2442496 RGD:1307864 603645 +HGNC:25068 GATC glutamyl-tRNA amidotransferase subunit C protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "FLJ37000|15E1.2|gatC" glutamyl-tRNA(Gln) amidotransferase, subunit C homolog (bacterial) 2007-11-26 2016-06-21 2016-06-21 283459 ENSG00000257218 OTTHUMG00000047788 uc010szi.3 AK094319 NM_176818 CCDS31911 O43716 19805282 MGI:1923776 RGD:1309698 GATC +HGNC:4175 GATM glycine amidinotransferase protein-coding gene gene with protein product Approved 15q21.1 15q21.1 AGAT L-arginine:glycine amidinotransferase 1998-02-20 2016-01-15 2016-10-05 2628 ENSG00000171766 OTTHUMG00000131427 uc001zvc.4 S68805 NM_001482 CCDS10122 P50440 8313955 MGI:1914342 RGD:71090 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/vumc/home.php?select_db=GATM GATM 602360 122037 objectId:1246 2.1.4.1 +HGNC:27073 GATM-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-05-12 uc021sko.3 +HGNC:29954 GATS GATS, stromal antigen 3 opposite strand protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "DKFZp686B07267|STAG3OS" stromal antigen 3 opposite strand 2009-02-05 2009-04-08 2009-04-08 2015-02-03 352954 ENSG00000239521 OTTHUMG00000155289 uc003uua.5 AK095056 NM_178831 CCDS43621 Q8NAP1 12477932 MGI:1933384 GATS +HGNC:37073 GATSL2 GATS protein like 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 GATSL1 GATS protein-like 1 2009-04-08 2015-02-04 2016-06-10 2016-06-10 729438 ENSG00000274070 OTTHUMG00000181541 uc003ucg.4 BC147030 NM_001145064 CCDS75620 A6NHX0 MGI:1933384 RGD:1304672 617033 +HGNC:34423 GATSL3 GATS protein like 3 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 GATS protein-like 3 2009-04-08 2016-06-10 2016-10-05 652968 ENSG00000239282 OTTHUMG00000150929 uc003ahd.4 NM_001037666 CCDS43001 Q8WTX7 MGI:1919212 RGD:1304774 GATSL3 617034 +HGNC:4177 GBA glucosylceramidase beta protein-coding gene gene with protein product Approved 1q22 01q22 GBA1 GLUC "glucosylceramidase|glucosidase, beta; acid (includes glucosylceramidase)|glucosidase, beta, acid" 1986-01-01 2016-03-15 2016-03-15 2629 ENSG00000177628 OTTHUMG00000035841 uc001fjk.4 M19285 NM_000157 "CCDS1102|CCDS53373|CCDS53374" P04062 3359914 MGI:95665 RGD:1589149 GBA 606463 122039 3.2.1.21 +HGNC:18986 GBA2 glucosylceramidase beta 2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "KIAA1605|AD035|DKFZp762K054" "bile acid beta-glucosidase|non-lysosomal glucosylceramidase" SPG46 "spastic paraplegia 46 (autosomal recessive)|glucosidase, beta (bile acid) 2" 2002-07-25 2016-03-15 2016-10-05 57704 ENSG00000070610 OTTHUMG00000021024 uc003zxw.3 AJ309567 NM_020944 "CCDS6589|CCDS83363" Q9HCG7 "11489889|23332916|23332917" MGI:2654325 RGD:1305598 GBA2 609471 328666 3.2.1.45 +HGNC:19069 GBA3 glucosylceramidase beta 3 (gene/pseudogene) protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "GLUC|KLrP" klotho-related protein "glucosidase, beta, acid 3 (cytosolic)|glucosidase, beta, acid 3 (gene/pseudogene)" 2002-12-16 2016-03-15 2016-03-15 57733 ENSG00000249948 OTTHUMG00000160448 uc031sdv.2 AB017913 NM_020973 Q9H227 11389701 RGD:1309539 GBA3 606619 3.2.1.21 +HGNC:4178 GBAP1 glucosylceramidase beta pseudogene 1 pseudogene pseudogene Approved 1q22 01q22 GBAP "glucosidase, beta; acid, pseudogene|glucosidase, beta, acid pseudogene 1" 1989-05-11 2010-01-19 2016-03-15 2016-03-15 2630 ENSG00000160766 OTTHUMG00000176393 J03060 NR_002188.2 +HGNC:4179 GBAS glioblastoma amplified sequence protein-coding gene gene with protein product Approved 7p11.2 07p11.2 NIPSNAP2 1997-10-30 2016-10-05 2631 ENSG00000146729 OTTHUMG00000022932 uc003tre.3 AF029786 NM_001483 "CCDS5521|CCDS56488" O75323 "9615231|9661659|20888800" MGI:1278343 RGD:1566421 GBAS 603004 +HGNC:33452 GBD2 gallbladder disease 2 phenotype phenotype only Approved 1p36.21 01p36.21 2007-05-01 2011-02-17 100048905 16400619 609918 +HGNC:33453 GBD3 gallbladder disease 3 phenotype phenotype only Approved 1p34.3 01p34.3 2007-05-01 2011-02-10 100048906 16400619 609919 +HGNC:4180 GBE1 1,4-alpha-glucan branching enzyme 1 protein-coding gene gene with protein product Approved 3p12.2 03p12.2 "glycogen branching enzyme|Andersen disease|glycogen storage disease type IV" glucan (1,4-alpha-), branching enzyme 1 1993-06-21 2016-08-10 2016-08-10 2632 ENSG00000114480 OTTHUMG00000158978 uc062lqz.1 NM_000158 CCDS54612 Q04446 8463281 MGI:1921435 RGD:1309968 GBE1 607839 122043 2.4.1.18 +HGNC:4181 GBF1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "KIAA0248|ARF1GEF" golgi-specific brefeldin A resistance factor 1 1999-01-14 2010-02-12 2016-10-05 8729 ENSG00000107862 OTTHUMG00000018955 uc001kux.3 D87435 XM_017016861 CCDS7533 Q92538 9828135 MGI:1861607 RGD:1307160 GBF1 603698 +HGNC:20460 GBGT1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "UDP-GalNAc|A3GALNT|MGC44848|FS" "Forssman glycolipid synthetase (FS)|Forssman synthetase" Glycosyltransferase family 6 429 2004-05-17 2016-10-12 26301 ENSG00000148288 OTTHUMG00000020853 uc004ccw.5 AY358175 NM_021996 "CCDS6960|CCDS65175|CCDS65176" Q8N5D6 "10506200|8855242" MGI:2449143 RGD:1591938 LRG_826|http://www.lrg-sequence.org/LRG/LRG_826 GBGT1 606074 +HGNC:4182 GBP1 guanylate binding protein 1 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "guanylate binding protein 1, interferon-inducible, 67kDa|guanylate binding protein 1, interferon-inducible" 1995-01-03 2016-01-21 2016-01-21 2633 ENSG00000117228 OTTHUMG00000010614 uc001dmx.3 BC002666 NM_002053 CCDS718 P32455 7518790 RGD:1311877 GBP1 600411 +HGNC:39561 GBP1P1 guanylate binding protein 1 pseudogene 1 pseudogene pseudogene Approved 1p22.2 01p22.2 guanylate binding protein 1, interferon-inducible pseudogene 1 2011-03-09 2016-01-21 2016-01-21 400759 ENSG00000225492 OTTHUMG00000010128 NR_003133 PGOHUM00000244789 +HGNC:4183 GBP2 guanylate binding protein 2 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 guanylate binding protein 2, interferon-inducible 1995-01-30 2016-01-21 2016-01-21 2634 ENSG00000162645 OTTHUMG00000010662 uc001dmz.3 BC073163 NM_004120 CCDS719 P32456 1715024 MGI:102772 RGD:621810 GBP2 600412 +HGNC:4184 GBP3 guanylate binding protein 3 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 FLJ10961 1995-01-30 2015-09-10 2635 ENSG00000117226 OTTHUMG00000010616 uc001dmt.4 BC063819 NM_018284 CCDS717 Q9H0R5 7518790 MGI:95666 RGD:1597766 GBP3 600413 +HGNC:20480 GBP4 guanylate binding protein 4 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 Mpa2 2003-11-21 2015-09-10 115361 ENSG00000162654 OTTHUMG00000010663 uc001dnb.4 AF288814 NM_052941 CCDS721 Q96PP9 16689661 MGI:1926263 GBP4 612466 +HGNC:19895 GBP5 guanylate binding protein 5 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 2003-11-21 2015-09-10 115362 ENSG00000154451 OTTHUMG00000010006 uc057iek.1 AF430642 NM_052942 CCDS722 Q96PP8 MGI:2429943 RGD:1311040 GBP5 611467 +HGNC:25395 GBP6 guanylate binding protein family member 6 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 DKFZp686G0786 guanylate binding protein family, member 6 2004-12-03 2015-11-18 2016-10-05 163351 ENSG00000183347 OTTHUMG00000010123 uc001dnf.3 BX537949 NM_198460 CCDS723 Q6ZN66 "MGI:97072|MGI:2140937|MGI:3605620|MGI:3646307|MGI:4359647" RGD:9294101 GBP6 612467 +HGNC:29606 GBP7 guanylate binding protein 7 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "FLJ38822|GBP4L" 2005-05-19 2015-09-10 388646 ENSG00000213512 OTTHUMG00000010659 uc001dna.2 AK096141 NM_207398 CCDS720 Q8N8V2 MGI:2444421 RGD:1310579 GBP7 612468 +HGNC:4185 GBX1 gastrulation brain homeobox 1 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 gastrulation brain homeo box 1 HOXL subclass homeoboxes 518 1997-10-30 2005-12-22 2015-08-27 2636 ENSG00000164900 OTTHUMG00000158751 uc011kvg.3 L11239 XM_017011964 CCDS43682 Q14549 7903253 MGI:95667 RGD:621864 GBX1 603354 8438 +HGNC:4186 GBX2 gastrulation brain homeobox 2 protein-coding gene gene with protein product Approved 2q37.2 02q37.2 gastrulation brain homeo box 2 HOXL subclass homeoboxes 518 1997-10-30 2005-12-22 2015-08-27 2637 ENSG00000168505 OTTHUMG00000133294 uc002vvw.2 AF118452 NM_001485 "CCDS2515|CCDS77545" P52951 "9346236|8838315" MGI:95668 RGD:621866 GBX2 601135 8379 +HGNC:4187 GC GC, vitamin D binding protein protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "DBP|VDBP|hDBP" group-specific component (vitamin D binding protein) 1986-01-01 2016-05-10 2016-05-10 2638 ENSG00000145321 OTTHUMG00000129915 uc003hge.4 L10641 NM_000583 "CCDS3550|CCDS56332" P02774 558959 MGI:95669 RGD:2667 GC 139200 +HGNC:15990 GCA grancalcin protein-coding gene gene with protein product Approved 2q24.2 02q24.2 GCL "grancalcin, EF-hand calcium-binding protein|grancalcin, EF-hand calcium binding protein" EF-hand domain containing 863 2001-07-20 2015-11-27 2015-11-27 25801 ENSG00000115271 OTTHUMG00000132057 uc002ucg.4 M81637 NM_012198 "CCDS2218|CCDS82527" P28676 "1737748|1530588|12804766" MGI:1918521 RGD:1306589 GCA 607030 +HGNC:52281 GCASPC gall bladder cancer associated suppressor of pyruvate carboxylase lncRNA non-coding RNA RNA, long non-coding Approved "TCONS_00011605|RP1-56L9.7-001|lnc-SOD2-1" Long non-coding RNAs 788 2016-08-04 2016-08-04 ENSG00000224073 OTTHUMG00000015939 27450454 +HGNC:4188 GCAT glycine C-acetyltransferase protein-coding gene gene with protein product Approved 22q13.1 22q13.1 KBL 2-amino-3-ketobutyrate coenzyme A ligase glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 1999-10-13 2010-01-19 2015-08-25 23464 ENSG00000100116 OTTHUMG00000150664 uc003atz.4 AF077740 NM_014291.2 "CCDS13957|CCDS54527" O75600 MGI:1349389 RGD:1307291 GCAT 607422 2.3.1.29 +HGNC:20013 GCATP1 glycine C-acetyltransferase pseudogene 1 pseudogene pseudogene Approved 14q23.2 14q23.2 GCATP glycine C-acetyltransferase pseudogene 2003-01-13 2010-01-19 2010-01-19 2014-11-19 319140 NG_002517 PGOHUM00000247826 +HGNC:19095 GCC1 GRIP and coiled-coil domain containing 1 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "FLJ22035|GCC88|GCC1P|MGC20706" golgi coiled-coil 1 2002-08-12 2003-10-17 2016-10-05 79571 ENSG00000179562 OTTHUMG00000023590 uc003vma.4 AF525417 NM_024523 CCDS5796 Q96CN9 10209125 MGI:1921625 RGD:2319954 GCC1 607418 +HGNC:23218 GCC2 GRIP and coiled-coil domain containing 2 protein-coding gene gene with protein product Approved 2q12.3 02q12.3 "GCC185|KIAA0336" GRIP and coiled-coil domain-containing 2 2003-10-17 2004-03-05 2015-08-25 9648 ENSG00000135968 OTTHUMG00000153214 uc002tec.4 BC020645 NM_014635 CCDS33268 Q8IWJ2 12446665 MGI:1917547 RGD:1305732 GCC2 612711 +HGNC:28126 GCC2-AS1 GCC2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q12.3 02q12.3 2015-03-11 2015-03-11 644903 ENSG00000214184 OTTHUMG00000153224 BC004487 NR_135290 +HGNC:4189 GCDH glutaryl-CoA dehydrogenase protein-coding gene gene with protein product Approved 19p13.13 19p13.13 ACAD5 glutaryl-Coenzyme A dehydrogenase Acyl-CoA dehydrogenase family 974 1992-12-17 2010-04-30 2016-10-05 2639 ENSG00000105607 OTTHUMG00000180561 uc002mvq.5 AF012342 XM_011527899 CCDS12286 Q92947 "1438360|8088809" MGI:104541 RGD:1308829 GCDH 608801 122045 1.3.99.7 +HGNC:4190 GCF1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:1317 GCFC2 GC-rich sequence DNA-binding factor 2 protein-coding gene gene with protein product Approved 2p12 02p12 "DNABF|GCF" GC binding factor "TCF9|C2orf3" "transcription factor 9 (binds GC-rich sequences)|chromosome 2 open reading frame 3" 2000-05-26 2011-11-24 2011-11-24 2014-11-19 6936 ENSG00000005436 OTTHUMG00000129989 uc002sno.4 AB026911 NM_003203 "CCDS1961|CCDS62943" P16383 "1370479|2556218|17309879|24304693" MGI:2141656 RGD:1304792 189901 +HGNC:4191 GCG glucagon protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "GLP1|GLP2|GRPP" "glicentin-related polypeptide|glucagon-like peptide 1|glucagon-like peptide 2|preproglucagon" Endogenous ligands 542 2001-06-22 2016-10-05 2641 ENSG00000115263 OTTHUMG00000153892 uc002ucc.5 NM_002054 CCDS46439 P01275 "2753890|3725587" MGI:95674 RGD:2668 GCG 138030 +HGNC:4192 GCGR glucagon receptor protein-coding gene gene with protein product Approved 17q25.3 17q25.3 GGR Glucagon receptor family 269 1994-03-04 2016-10-05 2642 ENSG00000215644 OTTHUMG00000177914 uc010wuw.2 "U03469|L20316" NM_000160 CCDS54177 P47871 8020989 MGI:99572 RGD:2669 GCGR 138033 446713 objectId:251 +HGNC:4193 GCH1 GTP cyclohydrolase 1 protein-coding gene gene with protein product Approved 14q22.2 14q22.2 "GTPCH1|DYT5a" dopa-responsive dystonia "GCH|DYT5|DYT14" dystonia 14 1988-05-11 2008-08-01 2016-10-05 2643 ENSG00000131979 OTTHUMG00000029754 uc059bsc.1 U19523 XM_017021218 "CCDS9720|CCDS41954|CCDS45110" P30793 "7874165|8695054" MGI:95675 RGD:61992 BIOMDBdb: Database of Mutations Causing BH4 Deficiencies and other PND|http://www.biopku.org/home/biomdb.asp GCH1 600225 122048 3.5.4.16 +HGNC:4194 GCHFR GTP cyclohydrolase I feedback regulator protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "GFRP|HsT16933" GTP cyclohydrolase I feedback regulatory protein 1996-12-18 2004-05-20 2016-10-05 2644 ENSG00000137880 OTTHUMG00000130069 uc001zmr.2 U78190 NM_005258 CCDS10064 P30047 "8702680|1286669" MGI:2443977 RGD:621746 GCHFR 602437 +HGNC:4195 GCK glucokinase protein-coding gene gene with protein product Approved 7p13 07p13 HK4 hexokinase 4 MODY2 "maturity onset diabetes of the young 2|glucokinase (hexokinase 4)" 1991-06-05 2016-01-22 2016-10-12 2645 ENSG00000106633 OTTHUMG00000022903 uc003tkl.3 AF041014 NM_000162 "CCDS5479|CCDS5480|CCDS5481" P35557 "1740341|1502186" MGI:1270854 RGD:2670 "Monogenic Diabetes|http://grenada.lumc.nl/LOVD2/diabetes/home.php?select_db=GCK|LRG_1074|http://www.lrg-sequence.org/LRG/LRG_1074" GCK 138079 122053 objectId:2798 "2.7.1.2|2.7.1.1" +HGNC:4196 GCKR glucokinase regulator protein-coding gene gene with protein product Approved 2p23.3 02p23.3 hexokinase 4 regulator glucokinase (hexokinase 4) regulatory protein 1993-08-24 2016-06-21 2016-10-05 2646 ENSG00000084734 OTTHUMG00000128426 uc002rky.4 Z48475 NM_001486 CCDS1757 Q14397 "9570959|8662230" MGI:1096345 RGD:2671 GCKR 600842 +HGNC:4311 GCLC glutamate-cysteine ligase catalytic subunit protein-coding gene gene with protein product Approved 6p12.1 06p12.1 GCS "GLCLC|GLCL" glutamate-cysteine ligase, catalytic subunit 1993-11-24 2016-02-24 2016-10-05 2729 ENSG00000001084 OTTHUMG00000160220 uc003pbw.3 M90656 XM_017010749 "CCDS4952|CCDS75471" P48506 1350904 MGI:104990 RGD:619868 GCLC 606857 122057 6.3.2.2 +HGNC:4312 GCLM glutamate-cysteine ligase modifier subunit protein-coding gene gene with protein product Approved 1p22.1 01p22.1 gamma-glutamylcysteine synthetase GLCLR glutamate-cysteine ligase, modifier subunit 1995-01-30 2016-01-21 2016-10-05 2730 ENSG00000023909 OTTHUMG00000010562 uc001dqg.2 L35546 NM_002061 "CCDS746|CCDS81352" P48507 7826375 MGI:104995 RGD:619871 GCLM 601176 6.3.2.2 +HGNC:4197 GCM1 glial cells missing homolog 1 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 hGCMa GCMA "glial cells missing (Drosophila) homolog a|glial cells missing homolog 1 (Drosophila)" 1998-10-02 2002-09-27 2016-01-28 2016-10-05 8521 ENSG00000137270 OTTHUMG00000014871 uc003pbp.4 D88613 XM_017011390 CCDS4950 Q9NP62 8962155 MGI:108045 RGD:61852 GCM1 603715 +HGNC:4198 GCM2 glial cells missing homolog 2 protein-coding gene gene with protein product Approved 6p24.2 06p24.2 hGCMb GCMB "glial cells missing (Drosophila) homolog b|glial cells missing homolog 2 (Drosophila)" 1998-10-02 2002-09-27 2016-01-28 2016-01-28 9247 ENSG00000124827 OTTHUMG00000014249 uc003mzn.5 AF079550 NM_004752 CCDS4517 O75603 9928992 MGI:1861438 RGD:1311127 GCM2 603716 159623 +HGNC:4199 GCN1 GCN1, eIF2 alpha kinase activator homolog protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "KIAA0219|GCN1L" GCN1L1 "GCN1 (general control of amino-acid synthesis 1, yeast)-like 1|GCN1 general control of amino-acid synthesis 1-like 1 (yeast)" 1999-08-20 2015-07-03 2015-12-04 2015-12-04 10985 ENSG00000089154 OTTHUMG00000169338 U77700 NM_006836 CCDS41847 Q92616 9234705 MGI:2444248 RGD:1593434 605614 +HGNC:4203 GCNT1 glucosaminyl (N-acetyl) transferase 1, core 2 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "C2GNT|NAGCT2" "core 2 beta1,6 N-acetylglucosaminyltransferase-I|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N--acetylglucosaminyltransferase" NACGT2 glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) Glucosaminyl (N-acetyl) transferases/xylosyltransferases 441 1993-09-07 2010-03-16 2016-10-05 2650 ENSG00000187210 OTTHUMG00000020044 uc010mpg.4 L41415 NM_001097634 CCDS6653 Q02742 "8449405|9915862" MGI:95676 RGD:621370 GCNT1 600391 2.4.1.102 +HGNC:16532 GCNT1P1 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 1 pseudogene pseudogene Approved 20p11.23 20p11.23 bA189K21.2 GCNT1P glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase) pseudogene 2001-09-17 2010-03-16 2010-03-16 2014-11-19 170517 ENSG00000236474 OTTHUMG00000031974 L42230 NG_001039 PGOHUM00000247456 +HGNC:37972 GCNT1P2 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 2 pseudogene pseudogene Approved 5p14.3 05p14.3 2010-03-16 2014-11-19 100421560 ENSG00000249206 OTTHUMG00000161913 NG_021841 PGOHUM00000235160 +HGNC:37973 GCNT1P3 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 3 pseudogene pseudogene Approved 3q28 03q28 2010-03-16 2014-11-19 100421581 ENSG00000231047 OTTHUMG00000156212 NG_022287 PGOHUM00000238299 +HGNC:37974 GCNT1P4 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 4 pseudogene pseudogene Approved 6q12 06q12 2010-03-16 2014-11-18 100462829 ENSG00000219653 OTTHUMG00000014956 NG_022356 PGOHUM00000243659 +HGNC:37975 GCNT1P5 glucosaminyl (N-acetyl) transferase 1, core 2 pseudogene 5 pseudogene pseudogene Approved 7q11.23 07q11.23 2010-03-16 2014-11-19 100421598 ENSG00000237620 OTTHUMG00000155782 NG_022567 PGOHUM00000233448 +HGNC:4204 GCNT2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) protein-coding gene gene with protein product Approved 6p24.3-p24.2 06p24.3-p24.2 "IGNT|NAGCT1|bA421M1.1|bA360O19.2|ULG3" "Ii blood group|unassigned linkage group 3" "NACGT1|II|GCNT5|CCAT" "glucosaminyl (N-acetyl) transferase 5|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme|glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (Ii blood group)|cataract, congenital" "Glucosaminyl (N-acetyl) transferases/xylosyltransferases|Blood group antigens" "441|454" 1993-09-07 2006-02-23 2016-10-12 2651 ENSG00000111846 OTTHUMG00000014244 uc010jol.4 L41605 NM_145649 "CCDS4512|CCDS4513|CCDS34338" Q8N0V5 "8449405|9915862" MGI:1100870 RGD:1303198 LRG_819|http://www.lrg-sequence.org/LRG/LRG_819 GCNT2 600429 426937 2.4.1.150 +HGNC:4205 GCNT3 glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "C2GnT-M|C2/4GnT|C2GnT2" Glucosaminyl (N-acetyl) transferases/xylosyltransferases 441 1999-02-26 2016-10-05 9245 ENSG00000140297 OTTHUMG00000132726 uc002age.4 AF102542 NM_004751 CCDS10172 O95395 "9915862|9988682" MGI:1919327 RGD:631333 GCNT3 606836 "2.4.1.102|2.4.1.150" +HGNC:17973 GCNT4 glucosaminyl (N-acetyl) transferase 4, core 2 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 C2GNT3 "core 2 beta-1,6-N-acetylglucosaminyltransferase 3|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4" glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase) Glucosaminyl (N-acetyl) transferases/xylosyltransferases 441 2006-02-06 2010-03-16 2016-10-05 51301 ENSG00000176928 OTTHUMG00000131272 uc003kdn.4 AF132035 NM_016591 CCDS4026 Q9P109 10753916 MGI:2684919 RGD:1563891 GCNT4 616782 2.4.1.102 +HGNC:21623 GCNT6 glucosaminyl (N-acetyl) transferase 6 protein-coding gene gene with protein product Approved 6p24.2 06p24.2 bA421M1.3 Glucosaminyl (N-acetyl) transferases/xylosyltransferases 441 2003-11-26 2014-11-19 644378 ENSG00000205318 OTTHUMG00000014243 Q5T4J0 GCNT6 +HGNC:16099 GCNT7 glucosaminyl (N-acetyl) transferase family member 7 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 dJ1153D9.2 C20orf105 chromosome 20 open reading frame 105 Glucosaminyl (N-acetyl) transferases/xylosyltransferases 441 2001-07-17 2007-07-03 2007-07-03 2016-10-05 140687 ENSG00000124091 OTTHUMG00000032798 uc061xww.1 "AL109806|AK131203" NM_080615 Q6ZNI0 MGI:3606143 RGD:7496421 GCNT7 2.4.1.- +HGNC:26424 GCOM1 GRINL1A complex locus 1 other readthrough Approved 15q21.3 15q21.3 "FLJ30973|GRINL1A|MYZAP-POLR2M" MYZAP-POLR2M readthrough 2008-08-05 2011-11-07 2012-10-05 145781 ENSG00000137878 OTTHUMG00000176411 uc002aem.4 NM_001018090 "CCDS10162|CCDS32247|CCDS42043|CCDS42044|CCDS73732" "15233991|18849881" GCOM1 +HGNC:15712 GCOM2 GRINL1B complex locus 2 (pseudogene) pseudogene pseudogene Approved 4q13.2 04q13.2 GLURR2 GRINL1B glutamate receptor, ionotropic, N-methyl D-aspartate-like 1B 2001-05-23 2011-11-07 2016-01-06 2016-01-06 339970 ENSG00000227725 OTTHUMG00000160803 AF326970 NG_009901 Q9BZD3 12063407 RGD:6485458 608311 +HGNC:20253 GCSAM germinal center associated signaling and motility protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "MGC40441|HGAL" human germinal center-associated lymphoma GCET2 germinal center expressed transcript 2 2003-01-15 2012-08-23 2016-04-04 2016-10-05 257144 ENSG00000174500 OTTHUMG00000159231 uc003dys.2 BC030506 NM_152785 "CCDS2964|CCDS54621|CCDS54622" Q8N6F7 MGI:102969 RGD:1591321 607792 +HGNC:29583 GCSAML germinal center associated signaling and motility like protein-coding gene gene with protein product Approved 1q44 01q44 FLJ44728 C1orf150 chromosome 1 open reading frame 150 2005-07-13 2012-08-23 2016-06-02 2016-06-02 148823 ENSG00000169224 OTTHUMG00000040648 uc031vul.1 AK126682 NM_145278 "CCDS1635|CCDS60470|CCDS73058" Q5JQS6 +HGNC:41244 GCSAML-AS1 GCSAML antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q44 01q44 2012-08-23 2014-11-19 148824 ENSG00000227135 OTTHUMG00000040649 uc057ram.1 NR_027309 +HGNC:4208 GCSH glycine cleavage system protein H protein-coding gene gene with protein product Approved 16q23.2 16q23.2 lipoic acid-containing protein glycine cleavage system protein H (aminomethyl carrier) 1992-04-08 2016-03-17 2016-10-12 2653 ENSG00000140905 OTTHUMG00000137626 uc002fgd.4 M69175 NM_004483 CCDS10933 P23434 "1671321|2025283" MGI:1915383 RGD:619946 LRG_541|http://www.lrg-sequence.org/LRG/LRG_541 GCSH 238330 122062 +HGNC:43922 GCSHP1 glycine cleavage system protein H pseudogene 1 pseudogene pseudogene Approved 5p13.1 05p13.1 glycine cleavage system protein H (aminomethyl carrier) pseudogene 1 2012-05-04 2016-06-27 2016-06-27 106480441 ENSG00000248651 OTTHUMG00000162068 NG_043382 PGOHUM00000235199 +HGNC:43927 GCSHP2 glycine cleavage system protein H pseudogene 2 pseudogene pseudogene Approved 14q32.32 14q32.32 glycine cleavage system protein H (aminomethyl carrier) pseudogene 2 2012-05-04 2016-06-27 2016-06-27 100288298 ENSG00000259525 OTTHUMG00000171893 NG_016382 PGOHUM00000248274 +HGNC:43929 GCSHP3 glycine cleavage system protein H pseudogene 3 pseudogene pseudogene Approved 2q33.3 02q33.3 glycine cleavage system protein H (aminomethyl carrier) pseudogene 3 2012-05-04 2016-06-27 2016-06-27 100329109 ENSG00000237580 OTTHUMG00000154650 NR_033248 PGOHUM00000240498 +HGNC:43930 GCSHP4 glycine cleavage system protein H pseudogene 4 pseudogene pseudogene Approved 12p13.31 12p13.31 glycine cleavage system protein H (aminomethyl carrier) pseudogene 4 2012-05-04 2016-06-27 2016-06-27 100287495 ENSG00000256171 OTTHUMG00000168636 PGOHUM00000239314 +HGNC:44195 GCSHP5 glycine cleavage system protein H pseudogene 5 pseudogene pseudogene Approved 1q24.2 01q24.2 2012-06-30 2012-07-04 100329108 ENSG00000224837 OTTHUMG00000034577 NG_029194 +HGNC:16670 GCUD1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4211 GCY growth control, Y chromosome influenced phenotype phenotype only Approved Yq11 Yq11 "STA|TSY" 2001-06-22 2012-10-02 2656 475000 +HGNC:4212 GDA guanine deaminase protein-coding gene gene with protein product Approved 9q21.13 09q21.13 1999-05-05 2014-11-18 9615 ENSG00000119125 OTTHUMG00000020005 uc004aiq.4 AF095286 XR_001746423 "CCDS6641|CCDS56576|CCDS56577" Q9Y2T3 "10075721|3966794" MGI:95678 RGD:621617 GDA 139260 M38.981 +HGNC:15968 GDAP1 ganglioside induced differentiation associated protein 1 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 "CMT4|CMT2K" CMT4A Charcot-Marie-Tooth neuropathy 4A 2001-06-25 2012-02-09 2016-10-12 54332 ENSG00000104381 OTTHUMG00000164509 uc003yah.4 NM_018972 "CCDS34911|CCDS47877" Q8TB36 "8268915|11743579" MGI:1338002 RGD:1309005 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_244|http://www.lrg-sequence.org/LRG/LRG_244" GDAP1 606598 122064 +HGNC:4213 GDAP1L1 ganglioside induced differentiation associated protein 1 like 1 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 ganglioside induced differentiation associated protein 1-like 1 2000-06-15 2016-06-16 2016-10-05 78997 ENSG00000124194 OTTHUMG00000032530 uc002xlq.5 NM_024034 "CCDS13328|CCDS74725|CCDS74726|CCDS74727" Q96MZ0 MGI:2385163 RGD:1304960 GDAP1L1 +HGNC:18010 GDAP2 ganglioside induced differentiation associated protein 2 protein-coding gene gene with protein product Approved 1p12 01p12 "FLJ20142|dJ776P7.1|MACROD3" BCH domain containing 1299 2002-01-16 2016-10-05 54834 ENSG00000196505 OTTHUMG00000012199 uc001ehf.4 AK000149 NM_017686 "CCDS897|CCDS44201" Q9NXN4 1021725 MGI:1338001 RGD:1306050 GDAP2 +HGNC:29644 GDE1 glycerophosphodiester phosphodiesterase 1 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 MIR16 membrane interacting protein of RGS16 2008-01-25 2016-10-05 51573 ENSG00000006007 OTTHUMG00000131454 uc002dgh.4 NM_016641 CCDS10578 Q9NZC3 "12576545|16472945" MGI:1891827 RGD:621788 GDE1 605943 3.1.4.46 +HGNC:4214 GDF1 growth differentiation factor 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 Endogenous ligands 542 1997-09-12 2015-09-11 2657 ENSG00000130283 OTTHUMG00000183278 uc060vuk.1 M62302 NM_001492 CCDS42526 P27539 2034669 MGI:95683 RGD:1304678 GDF1 602880 166892 +HGNC:4217 GDF2 growth differentiation factor 2 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "BMP-9|BMP9" Endogenous ligands 542 1997-09-12 2015-02-03 2658 ENSG00000263761 OTTHUMG00000188320 uc001jfa.2 AF156891 NM_016204 CCDS73118 Q9UK05 10849432 MGI:1321394 RGD:1586196 GDF2 605120 364602 +HGNC:4218 GDF3 growth differentiation factor 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 Endogenous ligands 542 1999-04-23 2016-10-05 9573 ENSG00000184344 OTTHUMG00000168433 uc001qte.4 AF263538 NM_020634 CCDS8581 Q9NR23 9467948 MGI:95686 RGD:1564178 GDF3 606522 250181 +HGNC:4219 GDF4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-07-09 +HGNC:4220 GDF5 growth differentiation factor 5 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "CDMP1|BMP14" cartilage-derived morphogenetic protein-1 1997-12-05 2007-04-12 2016-10-05 8200 ENSG00000125965 OTTHUMG00000032341 uc032phz.2 X80915 XM_011529075 CCDS13254 P43026 "9288091|9288098" MGI:95688 RGD:620102 GDF5 601146 122066 +HGNC:33435 GDF5OS growth differentiation factor 5 opposite strand other unknown Approved 20q11.22 20q11.22 2007-04-12 2016-10-05 554250 ENSG00000204183 OTTHUMG00000055985 uc061wmk.1 BC085019 Q5U4N7 GDF5OS +HGNC:4221 GDF6 growth differentiation factor 6 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "BMP13|KFS|KFS1" SGM1 segmentation syndrome 1 1999-04-23 2014-11-18 392255 ENSG00000156466 OTTHUMG00000164710 uc003yhp.3 NM_001001557 CCDS34926 Q6KF10 "10022976|18425797" MGI:95689 RGD:620104 GDF6 601147 209481 +HGNC:4222 GDF7 growth differentiation factor 7 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 BMP12 1999-04-23 2015-08-25 151449 ENSG00000143869 OTTHUMG00000090781 uc002rdz.2 AF522369 NM_182828 CCDS1701 Q7Z4P5 "10022976|9808626" MGI:95690 RGD:620105 GDF7 604651 +HGNC:4224 GDF9 growth differentiation factor 9 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 Endogenous ligands 542 1997-09-12 2015-08-25 2661 ENSG00000164404 OTTHUMG00000059842 uc011cxj.3 NM_005260 "CCDS4162|CCDS75299" O60383 7760846 MGI:95692 RGD:71038 GDF9 601918 400603 +HGNC:4215 GDF10 growth differentiation factor 10 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 BMP-3b Endogenous ligands 542 1997-09-12 2015-02-03 2662 ENSG00000266524 OTTHUMG00000188319 uc001jfb.4 L42113 NM_004962 CCDS73117 P55107 8679252 MGI:95684 RGD:621512 GDF10 601361 +HGNC:4216 GDF11 growth differentiation factor 11 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 BMP-11 1999-12-02 2015-09-11 10220 ENSG00000135414 OTTHUMG00000170188 uc001shq.4 AF100907 XM_006719194 CCDS8891 O95390 15988002 MGI:1338027 RGD:2673 GDF11 603936 +HGNC:30142 GDF15 growth differentiation factor 15 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "PLAB|MIC-1|PDF|MIC1|NAG-1|PTGFB" prostate differentiation factor 2004-02-12 2014-11-19 9518 ENSG00000130513 OTTHUMG00000183360 uc002niv.2 BC008962 NM_004864 CCDS12376 Q99988 "11895857|9593718" MGI:1346047 RGD:2674 GDF15 605312 +HGNC:4226 GDI1 GDP dissociation inhibitor 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "RABGDIA|XAP-4|OPHN2|FLJ41411" "mental retardation, X-linked 41|mental retardation, X-linked 48|rab GDP-dissociation inhibitor, alpha" "MRX48|MRX41|GDIL" X-linked mental retardation 103 1997-11-11 2015-09-11 2664 ENSG00000203879 OTTHUMG00000033293 uc004fli.5 X79353 NM_001493 CCDS35452 P31150 "7543319|7849400" MGI:99846 RGD:2676 GDI1 300104 122069 +HGNC:4227 GDI2 GDP dissociation inhibitor 2 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 RABGDIB rab GDP-dissociation 1997-11-11 2016-10-05 2665 ENSG00000057608 OTTHUMG00000017607 uc001iil.4 D13988 NM_001494 "CCDS7071|CCDS44352" P50395 9434952 MGI:99845 RGD:61802 GDI2 600767 +HGNC:4228 GDI2P1 GDP dissociation inhibitor 2 pseudogene 1 pseudogene pseudogene Approved 7p12.3 07p12.3 rab GDP-dissociation GDI2P GDP dissociation inhibitor 2 pseudogene 1998-04-28 2010-03-16 2010-03-16 2014-11-19 2667 ENSG00000229165 OTTHUMG00000155842 Y13298 NG_001124 9434952 PGOHUM00000232683 +HGNC:37976 GDI2P2 GDP dissociation inhibitor 2 pseudogene 2 pseudogene pseudogene Approved 1p31.1 01p31.1 2010-03-16 2014-11-19 100420259 ENSG00000233994 OTTHUMG00000009454 NG_022783 PGOHUM00000244755 +HGNC:4232 GDNF glial cell derived neurotrophic factor protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "ATF1|ATF2|HFB1-GDNF" "astrocyte-derived trophic factor|glial cell line derived neurotrophic factor|glial derived neurotrophic factor" Endogenous ligands 542 1995-05-04 2016-10-05 2668 ENSG00000168621 OTTHUMG00000090809 uc063dca.1 NM_000514 "CCDS3922|CCDS3923|CCDS54845|CCDS54846|CCDS75237" P39905 8493557 MGI:107430 RGD:2677 GDNF 600837 122076 +HGNC:43592 GDNF-AS1 GDNF antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 5p13.2 05p13.2 GDNFOS GDNF opposite strand "GDNF antisense RNA 1 (non-protein coding)|GDNF antisense RNA 1" 2011-11-16 2012-10-15 2012-10-15 100861519 ENSG00000248587 OTTHUMG00000162110 uc021xxo.2 DA359107 XM_017008916 22081608 +HGNC:20883 GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding gene gene with protein product Approved 17q22 17q22 "FLJ37451|GDE4" 2005-01-11 2016-10-05 284161 ENSG00000153982 OTTHUMG00000179376 uc002ixk.3 AK094770 NM_182569 "CCDS11616|CCDS58583|CCDS58584" Q8N9F7 14612981 MGI:1913819 RGD:1311813 GDPD1 616317 +HGNC:25974 GDPD2 glycerophosphodiester phosphodiesterase domain containing 2 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "OBDPF|FLJ20207|GDE3" osteoblast differentiation promoting factor 2004-04-23 2014-11-19 54857 ENSG00000130055 OTTHUMG00000021776 uc004dyh.4 AK000214 NM_017711 "CCDS14402|CCDS55437|CCDS55438" Q9HCC8 12975309 MGI:1918834 RGD:1560780 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GDPD2 GDPD2 300940 +HGNC:28638 GDPD3 glycerophosphodiester phosphodiesterase domain containing 3 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC4171 2005-03-15 2014-11-19 79153 ENSG00000102886 OTTHUMG00000132106 uc002dwp.4 AK026256 NM_024307 CCDS10671 Q7L5L3 MGI:1915866 RGD:1308386 GDPD3 616318 +HGNC:24849 GDPD4 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 GDE6 2005-03-15 2015-08-25 220032 ENSG00000178795 OTTHUMG00000165136 uc001oyf.3 AY326450 NM_182833 CCDS8249 Q6W3E5 MGI:3606573 RGD:1585799 GDPD4 +HGNC:28804 GDPD5 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding gene gene with protein product Approved 11q13.4-q13.5 11q13.4-q13.5 "PP1665|GDE2" 2005-03-15 2016-10-11 81544 ENSG00000158555 OTTHUMG00000165484 uc001owp.5 AF318377 NM_030792 CCDS8238 Q8WTR4 "18667693|17275818" MGI:2686926 RGD:1559673 GDPD5 609632 +HGNC:34360 GDPGP1 GDP-D-glucose phosphorylase 1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 C15orf58 chromosome 15 open reading frame 58 2008-07-02 2012-05-04 2012-05-04 2014-11-19 390637 ENSG00000183208 uc059ned.1 NM_001013657 CCDS32327 Q6ZNW5 21507950 MGI:2443429 RGD:1560277 2.7.7.78 +HGNC:4234 GEM GTP binding protein overexpressed in skeletal muscle protein-coding gene gene with protein product Approved 8q22.1 08q22.1 KIR kinase-inducible Ras-like protein GTP-binding protein overexpressed in skeletal muscle RGK type GTPase family 1260 1995-08-15 2001-11-28 2016-10-05 2669 ENSG00000164949 OTTHUMG00000164392 uc003ygi.4 NM_181702 CCDS6261 P55040 "7912851|11956230" MGI:99844 RGD:1307386 GEM 600164 +HGNC:10884 GEMIN2 gem nuclear organelle associated protein 2 protein-coding gene gene with protein product Approved 14q21.1 14q21.1 SIP1 "survival of motor neuron protein interacting protein 1|gem (nuclear organelle) associated protein 2" Gemins 1131 1998-10-16 2011-08-04 2015-11-06 2015-11-06 8487 ENSG00000092208 OTTHUMG00000028816 uc001wuq.4 AF027150 XM_017021709 "CCDS9669|CCDS32068|CCDS41946" O14893 "9323130|9323129|11121410" MGI:1913853 RGD:620842 602595 +HGNC:49561 GEMIN2P1 gem nuclear organelle associated protein 2 pseudogene 1 pseudogene pseudogene Approved 1q21.3 01q21.3 gem (nuclear organelle) associated protein 2 pseudogene 1 2014-01-14 2015-11-06 2015-11-06 101929669 ENSG00000235015 OTTHUMG00000037088 PGOHUM00000264153 +HGNC:49562 GEMIN2P2 gem nuclear organelle associated protein 2 pseudogene 2 pseudogene pseudogene Approved 3p22.1 03p22.1 gem (nuclear organelle) associated protein 2 pseudogene 2 2014-01-14 2015-11-06 2015-11-06 100287063 ENSG00000235339 OTTHUMG00000156200 PGOHUM00000238007 +HGNC:15717 GEMIN4 gem nuclear organelle associated protein 4 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "HHRF-1|DKFZP434B131|p97|DKFZP434D174|HC56|HCAP1" "HCC-associated protein 1|component of gems 4" gem (nuclear organelle) associated protein 4 "Minor histocompatibility antigens|Gemins" "870|1131" 2001-08-07 2015-11-06 2015-11-06 50628 ENSG00000179409 OTTHUMG00000177495 uc002frs.2 AF177341 NM_015721 CCDS45559 P57678 10725331 MGI:2449313 RGD:1563715 GEMIN4 606969 +HGNC:20043 GEMIN5 gem nuclear organelle associated protein 5 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 gem (nuclear organelle) associated protein 5 "WD repeat domain containing|Gemins" "362|1131" 2002-12-16 2015-11-06 2016-10-05 25929 ENSG00000082516 OTTHUMG00000130189 uc003lvx.4 AK022748 NM_015465 CCDS4330 Q8TEQ6 11714716 MGI:2449311 RGD:1586275 GEMIN5 607005 +HGNC:20044 GEMIN6 gem nuclear organelle associated protein 6 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 FLJ23459 gem (nuclear organelle) associated protein 6 Gemins 1131 2002-12-16 2015-11-06 2015-11-06 79833 ENSG00000152147 OTTHUMG00000128588 uc002rrc.4 AF453443 NM_024775 CCDS1799 Q8WXD5 11748230 MGI:1914492 RGD:1311168 GEMIN6 607006 +HGNC:20045 GEMIN7 gem nuclear organelle associated protein 7 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 FLJ13956 gem (nuclear organelle) associated protein 7 Gemins 1131 2002-12-16 2015-11-06 2015-11-06 79760 ENSG00000142252 OTTHUMG00000181768 uc002paq.2 AK024018 XM_005259263 CCDS12654 Q9H840 12065586 MGI:1916981 RGD:1597035 GEMIN7 607419 +HGNC:26044 GEMIN8 gem nuclear organelle associated protein 8 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 FLJ20514 FAM51A1 "family with sequence similarity 51, member A1|gem (nuclear organelle) associated protein 8" Gemins 1131 2004-09-06 2006-11-24 2015-11-06 2016-10-05 54960 ENSG00000046647 OTTHUMG00000021160 uc004cwb.4 BC020785 NM_017856 CCDS14159 Q9NWZ8 16434402 MGI:2384300 RGD:1359160 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GEMIN8 GEMIN8 300962 +HGNC:31818 GEMIN8P1 gem nuclear organelle associated protein 8 pseudogene 1 pseudogene pseudogene Approved 15q23 15q23 "FAM51A2P|GEMIN8P" "family with sequence similarity 51, member A2 pseudogene|gem (nuclear organelle) associated protein 8 pseudogene|gem (nuclear organelle) associated protein 8 pseudogene 1" 2004-09-06 2010-03-16 2015-11-06 2015-11-06 100128431 AC021818.9 NG_009513 PGOHUM00000246833 +HGNC:37977 GEMIN8P2 gem nuclear organelle associated protein 8 pseudogene 2 pseudogene pseudogene Approved 16q21 16q21 gem (nuclear organelle) associated protein 8 pseudogene 2 2010-03-16 2015-11-06 2015-11-06 644600 ENSG00000260451 OTTHUMG00000172972 NG_022523 PGOHUM00000249149 +HGNC:37978 GEMIN8P3 gem nuclear organelle associated protein 8 pseudogene 3 pseudogene pseudogene Approved Xq21.2 Xq21.2 gem (nuclear organelle) associated protein 8 pseudogene 3 2010-03-16 2015-11-06 2015-11-06 100421535 ENSG00000223772 OTTHUMG00000021942 NG_022678 PGOHUM00000241881 +HGNC:37979 GEMIN8P4 gem nuclear organelle associated protein 8 pseudogene 4 pseudogene pseudogene Approved 1p22.2 01p22.2 gem (nuclear organelle) associated protein 8 pseudogene 4 2010-03-16 2015-11-06 2015-11-06 492303 ENSG00000228175 OTTHUMG00000010673 NR_002830 PGOHUM00000244095 +HGNC:26881 GEN1 GEN1, Holliday junction 5' flap endonuclease protein-coding gene gene with protein product Approved 2p24.2 02p24.2 "FLJ40869|Gen" Holliday junction resolvase Gen endonuclease homolog 1 (Drosophila) 2007-11-14 2015-11-27 2015-11-27 348654 ENSG00000178295 OTTHUMG00000121173 uc002rct.3 AK098188 NM_182625 CCDS1691 Q17RS7 15576351 MGI:2443149 RGD:1559792 GEN1 612449 +HGNC:21690 GET4 golgi to ER traffic protein 4 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "CGI-20|H_NH1244M04.5|CEE|TRC35" "CGI-20 protein|conserved edge protein|transmembrane domain recognition complex, 35kDa" C7orf20 "chromosome 7 open reading frame 20|golgi to ER traffic protein 4 homolog (S. cerevisiae)" 2003-07-09 2010-03-24 2015-06-24 2015-06-24 51608 ENSG00000239857 OTTHUMG00000112459 uc003sjl.2 AK023560 NM_015949 CCDS5317 Q7L5D6 "10810093|20106980|20676083" MGI:1914854 RGD:1311660 GET4 612056 +HGNC:4235 GFAP glial fibrillary acidic protein protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ45472 intermediate filament protein Intermediate filaments Type III 610 1989-12-07 2016-10-05 2670 ENSG00000131095 OTTHUMG00000179866 uc002ihq.3 S40719 NM_002055 "CCDS11491|CCDS45708|CCDS59296" P14136 9693047 MGI:95697 RGD:2679 GFAP 137780 122078 HGNC:4235 +HGNC:4236 GFER growth factor, augmenter of liver regeneration protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "HSS|ERV1|ALR|HERV1|HPO1|HPO2" "ERV1 homolog (S. cerevisiae)|FAD-linked sulfhydryl oxidase ALR" growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration) 1997-03-19 2008-08-01 2016-10-05 2671 ENSG00000127554 OTTHUMG00000176896 uc002cob.4 BC002429 NM_005262 CCDS32368 P55789 8575761 MGI:107757 RGD:61845 GFER 600924 331852 1.8.3.2 +HGNC:4237 GFI1 growth factor independent 1 transcriptional repressor protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "GFI1A|GFI-1" ZNF163 growth factor independent 1 "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 1994-10-17 2016-05-04 2016-10-12 2672 ENSG00000162676 OTTHUMG00000010897 uc001dow.5 U67369 NM_005263 CCDS30773 Q99684 7789186 MGI:103170 RGD:2680 "GFI1base: Mutation registry for SCN and NI-CINA|http://structure.bmc.lu.se/idbase/GFI1base/|LRG_63|http://www.lrg-sequence.org/LRG/LRG_63" GFI1 600871 122080 +HGNC:4238 GFI1B growth factor independent 1B transcriptional repressor protein-coding gene gene with protein product Approved 9q34.13 09q34.13 ZNF163B growth factor independent 1B (potential regulator of CDKN1A, translocated in CML) "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 1998-09-17 2016-05-04 2016-10-12 8328 ENSG00000165702 OTTHUMG00000020848 uc064wsy.1 AF081946 NM_004188 "CCDS6957|CCDS48049" Q5VTD9 9878267 MGI:1276578 RGD:1311727 LRG_879|http://www.lrg-sequence.org/LRG/LRG_879 GFI1B 604383 390922 +HGNC:13780 GFM1 G elongation factor mitochondrial 1 protein-coding gene gene with protein product Approved 3q25.32 03q25.32 "EFGM|GFM|EGF1" G translation elongation factor, mitochondrial 2004-11-25 2016-07-05 2016-10-05 85476 ENSG00000168827 OTTHUMG00000158804 uc003fce.4 AF309777 NM_024996 "CCDS33885|CCDS77851|CCDS82867" Q96RP9 "11374907|11735030" MGI:107339 RGD:631396 GFM1 606639 166715 +HGNC:29682 GFM2 G elongation factor mitochondrial 2 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "EFG2|FLJ21661" 2004-09-30 2016-07-05 2016-10-05 84340 ENSG00000164347 OTTHUMG00000102058 uc003kdh.2 AF111808 NM_032380 "CCDS4023|CCDS4024|CCDS47232" Q969S9 11735030 MGI:2444783 RGD:1309854 GFM2 606544 +HGNC:21096 GFOD1 glucose-fructose oxidoreductase domain containing 1 protein-coding gene gene with protein product Approved 6p24.1-p23 06p24.1-p23 "FLJ20330|ADG-90" C6orf114 chromosome 6 open reading frame 114 2003-05-19 2016-10-11 54438 ENSG00000145990 OTTHUMG00000014276 uc003nat.3 AK000337 NM_018988 "CCDS4524|CCDS56397|CCDS64351" Q9NXC2 MGI:2145304 RGD:1311507 GFOD1 +HGNC:40956 GFOD1-AS1 GFOD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p23 06p23 GFOD1 antisense RNA 1 (non-protein coding) 2011-06-30 2012-08-15 2014-11-19 100874025 ENSG00000237786 OTTHUMG00000014274 uc063lym.1 +HGNC:28159 GFOD2 glucose-fructose oxidoreductase domain containing 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ23802|MGC11335" 2006-04-06 2015-07-16 81577 ENSG00000141098 OTTHUMG00000137537 uc002eub.4 AK074382 NM_030819 "CCDS10845|CCDS59268" Q3B7J2 12975309 MGI:1917825 RGD:1311198 GFOD2 +HGNC:4241 GFPT1 glutamine--fructose-6-phosphate transaminase 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "GFAT|GFA|GFAT1" GFPT glutamine-fructose-6-phosphate transaminase 1 1993-12-14 2010-05-11 2016-10-12 2673 ENSG00000198380 OTTHUMG00000152666 uc002sfh.4 XM_017003801 "CCDS33216|CCDS58713" Q06210 1460020 MGI:95698 RGD:1549703 LRG_787|http://www.lrg-sequence.org/LRG/LRG_787 GFPT1 138292 259368 C44.970 2.6.1.16 +HGNC:4242 GFPT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 GFAT2 glutamine: fructose-6-phosphate aminotransferase 2 1999-05-06 2016-10-05 9945 ENSG00000131459 OTTHUMG00000163442 uc003mlw.2 AB016789 NM_005110 CCDS43411 O94808 10198162 MGI:1338883 RGD:1303097 GFPT2 603865 C44.972 +HGNC:4243 GFRA1 GDNF family receptor alpha 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "RETL1|GDNFR|GFR-ALPHA-1|RET1L|TRNR1" GDNFRA 1997-01-17 2016-10-05 2674 ENSG00000151892 OTTHUMG00000019097 uc009xyr.4 AF038421 NM_145793 "CCDS7593|CCDS44481" P56159 "9465905|9545641" MGI:1100842 RGD:2681 GFRA1 601496 objectId:1743 +HGNC:4244 GFRA2 GDNF family receptor alpha 2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "RETL2|GDNFRB|NTNRA|TRNR2" 1997-10-21 2014-11-19 2675 ENSG00000168546 OTTHUMG00000163897 uc064kuz.1 AF002700 NM_001495 "CCDS47816|CCDS55207|CCDS55208" O00451 9177201 MGI:1195462 RGD:61809 GFRA2 601956 objectId:1744 +HGNC:4245 GFRA3 GDNF family receptor alpha 3 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 GFRa-3 1998-02-27 2016-10-05 2676 ENSG00000146013 OTTHUMG00000129200 uc003lcn.4 AY358997 NM_001496 CCDS4201 O60609 9407096 MGI:1201403 RGD:620502 GFRA3 605710 objectId:1745 +HGNC:13821 GFRA4 GDNF family receptor alpha 4 protein-coding gene gene with protein product Approved 20p13 20p13 persephin receptor 2001-01-18 2016-10-05 64096 ENSG00000125861 OTTHUMG00000031748 uc002wio.4 AF253318 NM_145762 "CCDS13055|CCDS13056" Q9GZZ7 "10958791|15225646" MGI:1341873 RGD:620503 GFRA4 objectId:1746 +HGNC:32789 GFRAL GDNF family receptor alpha like protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "GRAL|UNQ9356|bA360D14.1" C6orf144 chromosome 6 open reading frame 144 2006-05-18 2014-11-19 389400 ENSG00000187871 OTTHUMG00000014900 uc003pcm.1 AY358198 NM_207410 CCDS4957 Q6UXV0 16086688 MGI:3607786 RGD:1565220 GFRAL +HGNC:44663 GFY golgi associated olfactory signaling regulator protein-coding gene gene with protein product Approved 19q13.33 19q13.33 Goofy Golgi protein in olfactory neurons 2014-01-10 2015-12-11 2015-12-11 100507003 ENSG00000261949 OTTHUMG00000177824 NM_001195256 CCDS58672 I3L273 23926254 MGI:2685427 RGD:6500406 +HGNC:17842 GGA1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 Golgi associated, gamma adaptin ear containing, ARF binding proteins 1031 2001-12-19 2016-06-08 2016-10-05 26088 ENSG00000100083 OTTHUMG00000030985 uc003atc.4 AF190862 NM_013365 "CCDS13951|CCDS33643|CCDS54526" Q9UJY5 "10747088|10747089|16407204" MGI:2146207 RGD:1307770 GGA1 606004 +HGNC:16064 GGA2 golgi associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "VEAR|KIAA1080" golgi-associated, gamma adaptin ear containing, ARF binding protein 2 Golgi associated, gamma adaptin ear containing, ARF binding proteins 1031 2001-12-19 2016-03-21 2016-10-05 23062 ENSG00000103365 OTTHUMG00000096957 uc002dlq.3 AF190863 XM_017023074 CCDS10611 Q9UJY4 "10747088|10749927" MGI:1921355 RGD:1304800 GGA2 606005 +HGNC:17079 GGA3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 KIAA0154 golgi-associated, gamma adaptin ear containing, ARF binding protein 3 Golgi associated, gamma adaptin ear containing, ARF binding proteins 1031 2001-12-19 2016-03-30 2016-10-05 23163 ENSG00000125447 OTTHUMG00000179483 uc032frk.2 AF190864 NM_138619 "CCDS11716|CCDS11717|CCDS54164|CCDS58597" Q9NZ52 "10747089|10749927" MGI:2384159 RGD:1309553 GGA3 606006 +HGNC:25100 GGACT gamma-glutamylamine cyclotransferase protein-coding gene gene with protein product Approved 13q32.3 13q32.3 A2LD1 AIG2-like domain 1 2008-08-12 2012-09-27 2012-09-27 2014-11-19 87769 ENSG00000134864 OTTHUMG00000017291 uc058yas.1 NM_033110 CCDS45066 Q9BVM4 20110353 MGI:2385008 RGD:1304748 613378 2.3.2.4 +HGNC:21705 GGCT gamma-glutamylcyclotransferase protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "MGC3077|CRF21|Ggc" "C7orf24|GCTG" chromosome 7 open reading frame 24 2003-07-14 2008-08-04 2010-04-23 2016-10-05 79017 ENSG00000006625 OTTHUMG00000128593 uc003tba.4 BC019243 NM_024051 "CCDS5428|CCDS56474|CCDS56475|CCDS56476" O75223 "17932939|18515354" MGI:95700 RGD:1304876 GGCT 137170 objectId:1392 2.3.2.4 +HGNC:4247 GGCX gamma-glutamyl carboxylase protein-coding gene gene with protein product Approved 2p11.2 02p11.2 VKCFD1 vitamin K-dependent gamma-carboxylase 1994-07-04 2016-10-12 2677 ENSG00000115486 OTTHUMG00000130173 uc002sps.4 NM_000821 "CCDS1978|CCDS46353" P38435 1749935 MGI:1927655 RGD:68383 LRG_592|http://www.lrg-sequence.org/LRG/LRG_592 GGCX 137167 122083 objectId:1268 +HGNC:4248 GGH gamma-glutamyl hydrolase protein-coding gene gene with protein product Approved 8q12.3 08q12.3 "conjugase|folylpolygammaglutamyl hydrolase" 1999-02-10 2016-01-18 2016-01-18 8836 ENSG00000137563 OTTHUMG00000164365 uc003xuw.4 U55206 XM_011517623 CCDS6177 Q92820 "8816764|10570974" MGI:1329035 RGD:2682 GGH 601509 311355 C26.001 objectId:2367 3.4.19.9 +HGNC:18869 GGN gametogenetin protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ35713|MGC33369" 2005-01-07 2015-08-25 199720 ENSG00000179168 OTTHUMG00000182080 uc002oij.2 AF538035 NM_152657 CCDS12516 Q86UU5 12574169 MGI:2181461 RGD:1306765 GGN 609966 +HGNC:19427 GGNBP1 gametogenetin binding protein 1 (pseudogene) pseudogene pseudogene Approved 6p21.31 06p21.31 gametogenetin binding protein 1 2007-08-20 2012-04-19 2015-01-16 449520 ENSG00000204188 OTTHUMG00000187092 NR_028361 Q5YKI7 15642376 MGI:3055306 RGD:1359729 GGNBP1 609495 +HGNC:19357 GGNBP2 gametogenetin binding protein 2 protein-coding gene gene with protein product Approved 17q12 17q12 "ZFP403|LZK1|FLJ22561|FLJ21230|DIF-3|DIF3" ZNF403 zinc finger protein 403 2004-02-26 2007-08-20 2007-08-20 2015-02-03 79893 ENSG00000278311 OTTHUMG00000188440 uc032ggv.3 AF126964 NM_024835 CCDS11314 Q9H3C7 11728448 MGI:2387356 RGD:1302978 GGNBP2 612275 +HGNC:4249 GGPS1 geranylgeranyl diphosphate synthase 1 protein-coding gene gene with protein product Approved 1q42.3 01q42.3 GGPPS1 1999-08-26 2016-10-05 9453 ENSG00000152904 OTTHUMG00000037963 uc001hwv.4 AB016043 NM_004837 CCDS1604 O95749 "9741684|10101267" MGI:1341724 RGD:1359680 GGPS1 606982 objectId:643 "2.5.1.1|2.5.1.10|2.5.1.29" +HGNC:4250 GGT1 gamma-glutamyltransferase 1 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "D22S672|D22S732|CD224" GGT "CD molecules|Gamma-glutamyltransferases" "471|564" 1986-01-01 2014-11-19 2678 ENSG00000100031 OTTHUMG00000030859 uc003aan.2 M24903 NM_013430 CCDS42992 P19440 "8104871|18357469" MGI:95706 RGD:2683 GGT1 612346 122086 T03.006 CD224 2.3.2.2 +HGNC:4251 GGT2 gamma-glutamyltransferase 2 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 GGT Gamma-glutamyltransferases 564 1989-06-30 2015-09-10 728441 ENSG00000133475 OTTHUMG00000150617 uc062byb.1 M30474 XM_001129377 P36268 "8104871|18357469" GGT2 137181 T03.015 2.3.2.2 +HGNC:4252 GGT3P gamma-glutamyltransferase 3 pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 GGT3 gamma-glutamyltransferase 3 Gamma-glutamyltransferases 564 1992-08-04 2008-03-10 2008-03-10 2015-08-13 2679 ENSG00000197421 OTTHUMG00000150161 NR_003267 A6NGU5 "8104871|18357469" PGOHUM00000297454 +HGNC:33207 GGT4P gamma-glutamyltransferase 4 pseudogene pseudogene pseudogene Approved 13q11 13q11 Gamma-glutamyltransferases 564 2008-03-10 2015-08-13 643171 ENSG00000280208 OTTHUMG00000189382 XR_038677 18357469 PGOHUM00000291846 +HGNC:4260 GGT5 gamma-glutamyltransferase 5 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 GGT-REL GGTLA1 gamma-glutamyltransferase-like activity 1 Gamma-glutamyltransferases 564 1992-08-24 2008-03-10 2008-03-10 2016-02-02 2687 ENSG00000099998 OTTHUMG00000150796 uc002zzo.4 M64099 NM_004121 "CCDS13825|CCDS42989|CCDS42990" P36269 "1676842|8095916|18357469" MGI:1346063 RGD:2684 GGT5 137168 T03.002 2.3.2.2 +HGNC:26891 GGT6 gamma-glutamyltransferase 6 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 FLJ90165 gamma-glutamyltransferase 6 homolog (rat) Gamma-glutamyltransferases 564 2005-11-14 2008-03-10 2014-11-18 124975 ENSG00000167741 OTTHUMG00000177827 uc002fyd.6 AK074646 NM_153338 "CCDS11047|CCDS45582|CCDS73942" Q6P531 18357469 MGI:1918772 RGD:1303335 GGT6 612341 +HGNC:4259 GGT7 gamma-glutamyltransferase 7 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "D20S101|dJ18C9.2" "GGTL5|GGTL3" gamma-glutamyltransferase-like 3 Gamma-glutamyltransferases 564 1992-08-04 2008-03-10 2008-03-10 2016-07-28 2686 ENSG00000131067 OTTHUMG00000032314 uc002xay.4 AL049709 NM_178026 CCDS13242 Q9UJ14 "8104871|18357469" MGI:1913385 RGD:619870 GGT7 612342 T03.017 2.3.2.2 +HGNC:33438 GGT8P gamma-glutamyltransferase 8 pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 FLJ31276 GGT1P1 gamma-glutamyltransferase 1 pseudogene 1 Gamma-glutamyltransferases 564 2008-01-23 2008-03-10 2008-03-10 2016-10-05 645367 ENSG00000236969 OTTHUMG00000155086 AK055838 NR_003503 18357469 +HGNC:4253 GGTA1P glycoprotein, alpha-galactosyltransferase 1 pseudogene pseudogene pseudogene Approved 9q33.2 09q33.2 "GLYT2|GGTA|GGTA1" glycoprotein, alpha-galactosyltransferase 1 1990-08-03 2011-05-04 2010-03-19 2014-11-19 2681 ENSG00000204136 OTTHUMG00000020592 NR_003191 Q4G0N0 "1559713|2108966" MGI:95704 RGD:629476 104175 +HGNC:4254 GGTA2P glycoprotein, alpha-galactosyltransferase 2, pseudogene pseudogene pseudogene Approved 12q14.3 12q14.3 HGT2 "GLYT2L|GLYT3|GGTA1P" glycoprotein, alpha-galactosyltransferase 1 pseudogene 1991-09-12 2010-03-19 2010-03-19 2013-09-05 121328 ENSG00000237766 OTTHUMG00000169051 NG_002767 1901859 PGOHUM00000239505 +HGNC:4255 GGTB1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:4257 GGTL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:4258 GGTL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:16437 GGTLC1 gamma-glutamyltransferase light chain 1 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "dJ831C21.2|dJ831C21.1" "GGTLA4|GGTLA3" "gamma-glutamyltransferase-like activity 4|gamma-glutamyltransferase-like activity 3" Gamma-glutamyltransferases 564 2001-09-17 2008-03-10 2008-03-10 2015-09-10 92086 ENSG00000149435 OTTHUMG00000032095 uc002wtu.3 AL133466 NM_178311.2 CCDS13163 Q9BX51 "10843999|18357469" GGTLC1 612338 +HGNC:18596 GGTLC2 gamma-glutamyltransferase light chain 2 protein-coding gene gene with protein product Approved 22q11.22 22q11.22 GGTL4 gamma-glutamyltransferase-like 4 Gamma-glutamyltransferases 564 2002-04-29 2008-03-10 2008-03-10 2016-10-05 91227 ENSG00000100121 OTTHUMG00000151177 uc062ccl.1 X98922 NM_199127 CCDS13802 Q14390 "9074928|18357469" GGTLC2 612339 T03.016 +HGNC:33426 GGTLC3 gamma-glutamyltransferase light chain 3 other unknown Approved 22q11.21 22q11.21 Gamma-glutamyltransferases 564 2008-03-10 2015-02-03 728226 ENSG00000274252 OTTHUMG00000188352 uc062biv.1 L10397 XM_001128310 B5MD39 18357469 GGTLC3 612340 +HGNC:33428 GGTLC4P gamma-glutamyltransferase light chain 4 pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 Gamma-glutamyltransferases 564 2008-03-10 2015-08-13 729838 ENSG00000230712 OTTHUMG00000150766 L10395 XR_015549 18357469 PGOHUM00000297502 +HGNC:33427 GGTLC5P gamma-glutamyltransferase light chain 5 pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 Gamma-glutamyltransferases 564 2008-03-10 2015-08-13 653590 ENSG00000276160 OTTHUMG00000188346 L10399 XR_016962 18357469 PGOHUM00000297626 +HGNC:4261 GH1 growth hormone 1 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "GH-N|GHN|GH|hGH-N" "pituitary growth hormone|somatotropin" "Endogenous ligands|Growth hormone family" "542|1175" 2001-06-22 2016-01-15 2688 ENSG00000259384 OTTHUMG00000172293 uc002jdj.4 M13438 NM_000515 "CCDS11653|CCDS11654|CCDS45760" P01241 6306568 MGI:95707 RGD:2686 GH1 139250 122092 +HGNC:4262 GH2 growth hormone 2 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "GH-V|GHV|GHL|hGH-V" "placental-specific growth hormone|placenta-specific growth hormone" "Endogenous ligands|Growth hormone family" "542|1175" 2001-06-22 2016-01-15 2689 ENSG00000136487 OTTHUMG00000172284 uc002jco.3 J03756 NM_002059 "CCDS11647|CCDS11648|CCDS45757|CCDS45758" P01242 6306568 GH2 139240 +HGNC:24438 GHDC GH3 domain containing protein-coding gene gene with protein product Approved 17q21.2 17q21.2 LGP1 2006-08-02 2014-11-19 84514 ENSG00000167925 OTTHUMG00000180108 uc060fhk.1 "AF316997|BC011056" NM_032484 "CCDS11422|CCDS45682" Q8N2G8 "11161808|11735219" MGI:1931556 RGD:1308881 GHDC 608587 +HGNC:49425 GHET1 gastric carcinoma proliferation enhancing transcript 1 non-coding RNA RNA, long non-coding Approved 7q36.1 07q36.1 lncRNA-GHET1 gastric carcinoma high expressed transcript 1 Long non-coding RNAs 788 2014-01-07 2014-01-14 102723099 ENSG00000281189 OTTHUMG00000189524 "AK123072|BC037977" NR_130107 24397586 +HGNC:17281 GHITM growth hormone inducible transmembrane protein protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "HSPC282|PTD010|DERP2|My021|TMBIM5" transmembrane BAX inhibitor motif containing 5 Transmembrane BAX inhibitor motif containing 1215 2001-12-10 2014-11-19 27069 ENSG00000165678 OTTHUMG00000018637 uc001kcs.2 AB009685 NM_014394 CCDS41542 Q9H3K2 "8619474|9110174" MGI:1913342 RGD:1359301 GHITM +HGNC:4263 GHR growth hormone receptor protein-coding gene gene with protein product Approved 5p13.1-p12 05p13.1-p12 GHBP growth hormone binding protein Fibronectin type III domain containing 555 1989-06-30 2016-10-11 2690 ENSG00000112964 OTTHUMG00000094791 uc003jmt.4 NM_000163 "CCDS3940|CCDS56364|CCDS75239|CCDS75240" P10912 MGI:95708 RGD:2687 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/growth/home.php?select_db=GHR GHR 600946 122095 objectId:1720 +HGNC:4265 GHRH growth hormone releasing hormone protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "sermorelin|somatocrinin|somatoliberin" GHRF Endogenous ligands 542 1986-01-01 2016-10-05 2691 ENSG00000118702 OTTHUMG00000032413 uc002xgs.5 XM_011528784 "CCDS13292|CCDS54460" P01286 3918305 MGI:95709 RGD:61883 GHRH 139190 +HGNC:4266 GHRHR growth hormone releasing hormone receptor protein-coding gene gene with protein product Approved 7p14.3 07p14.3 Glucagon receptor family 269 1993-06-22 2016-10-05 2692 ENSG00000106128 OTTHUMG00000152801 uc003tbx.4 NM_000823 CCDS5432 Q02643 "7680413|7514564" MGI:95710 RGD:2688 GHRHR 139191 122097 objectId:247 +HGNC:18129 GHRL ghrelin and obestatin prepropeptide protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "MTLRP|ghrelin|obestatin" prepro-appetite regulatory hormone "ghrelin, growth hormone secretagogue receptor ligand|ghrelin/obestatin prepropeptide" Endogenous ligands 542 2006-01-05 2016-08-10 2016-08-10 51738 ENSG00000157017 OTTHUMG00000155360 uc021wsz.2 AF296558 NM_016362 "CCDS33700|CCDS46747|CCDS46748|CCDS46749|CCDS46750" Q9UBU3 "10930375|10604470|16284174" MGI:1930008 RGD:632283 GHRL 605353 +HGNC:33885 GHRLOS ghrelin opposite strand/antisense RNA non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 "NCRNA00068|GHRL-AS1" "non-protein coding RNA 68|GHRL antisense RNA 1 (non-protein coding)" "ghrelin opposite strand RNA (non-protein coding)|ghrelin opposite strand/antisense RNA (non-protein coding)" Long non-coding RNAs 788 2007-11-20 2011-11-14 2012-08-15 2014-10-03 100126793 ENSG00000240288 OTTHUMG00000155359 uc062grr.1 EF549568 NR_004431 "17727735|18954468" +HGNC:4267 GHSR growth hormone secretagogue receptor protein-coding gene gene with protein product Approved 3q26.31 03q26.31 Peptide receptors 220 1997-09-12 2014-11-19 2693 ENSG00000121853 OTTHUMG00000156946 uc003fib.3 AY429112 NM_004122 "CCDS3218|CCDS46959" Q92847 8688086 MGI:2441906 RGD:621397 GHSR 601898 201252 objectId:246 +HGNC:28453 GID4 GID complex subunit 4 homolog protein-coding gene gene with protein product Approved 17p11.2 17p11.2 VID24 vacuolar import and degradation 24 C17orf39 "chromosome 17 open reading frame 39|GID complex subunit 4, VID24 homolog (S. cerevisiae)|GID complex subunit 4" 2004-04-20 2012-07-20 2015-07-22 2015-08-25 79018 ENSG00000141034 OTTHUMG00000059398 uc002gsg.2 AK127580 NM_024052 CCDS11190 Q8IVV7 11997338 MGI:1914021 RGD:1588894 +HGNC:15857 GID8 GID complex subunit 8 homolog protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FLJ20602|bA305P22.1|TWA1" two hybrid associated protein No. 1 with RanBPM C20orf11 "chromosome 20 open reading frame 11|GID complex subunit 8 homolog (S. cerevisiae)|GID complex subunit 8" 2001-06-21 2012-07-20 2016-04-05 2016-04-05 54994 ENSG00000101193 OTTHUMG00000032949 uc002ydy.4 AK000609 NM_017896 CCDS13510 Q9NWU2 12559565 MGI:1923675 RGD:735024 611625 +HGNC:4268 GIF gastric intrinsic factor protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "TCN3|IF|IFMH|INF" gastric intrinsic factor (vitamin B synthesis) 1989-06-30 2015-11-23 2015-11-23 2694 ENSG00000134812 OTTHUMG00000167399 uc001noi.4 X76562 NM_005142 CCDS7977 P27352 2071148 MGI:1202394 RGD:62084 GIF 609342 122099 +HGNC:9126 GIGYF1 GRB10 interacting GYF protein 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 GYF1 GYF domain containing 1 PERQ1 PERQ amino acid rich, with GYF domain 1 1998-06-03 2008-02-11 2008-02-11 2016-10-05 64599 ENSG00000146830 OTTHUMG00000157036 uc003uwg.2 AF053356 NM_022574 CCDS34708 O75420 "9799793|12771153" MGI:1888677 RGD:1309933 GIGYF1 612064 +HGNC:11960 GIGYF2 GRB10 interacting GYF protein 2 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "KIAA0642|GYF2" GYF domain containing 2 "PERQ2|PERQ3|TNRC15|PARK11" "PERQ amino acid rich, with GYF domain 2|PERQ amino acid rich, with GYF domain 3|trinucleotide repeat containing 15|Parkinson disease (autosomal recessive, early onset) 11" Trinucleotide repeat containing 775 2000-01-27 2008-02-11 2008-02-11 2014-11-18 26058 ENSG00000204120 OTTHUMG00000153237 uc002vtk.6 U80751 NM_001103146 "CCDS33401|CCDS46542|CCDS46543" Q6Y7W6 "9225980|9734811|12771153|18358451|19279319" MGI:2138584 RGD:2318130 Parkinson's disease Mutation Database|http://grenada.lumc.nl/LOVD2/TPI/home.php?select_db=PARK11 GIGYF2 612003 159059 +HGNC:23237 GIMAP1 GTPase, IMAP family member 1 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "HIMAP1|IMAP38|IMAP1|IAN2" immune-associated nucleotide-binding protein 2 GTPases, IMAP 580 2004-10-29 2014-11-18 170575 ENSG00000213203 OTTHUMG00000157489 uc003whq.4 AJ306287 NM_130759 CCDS5906 Q8WWP7 "15474311|18701445" MGI:109368 RGD:1306777 GIMAP1 608084 +HGNC:51257 GIMAP1-GIMAP5 GIMAP1-GIMAP5 readthrough other readthrough Approved 7q36.1 07q36.1 2015-01-27 2015-01-27 100527949 ENSG00000281887 OTTHUMG00000189885 NM_001199577 CCDS75677 "MGI:1932723|MGI:2442232" +HGNC:21789 GIMAP2 GTPase, IMAP family member 2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "DKFZp586D0824|HIMAP2|IMAP2|IAN12" immune-associated nucleotide-binding protein 12 GTPases, IMAP 580 2004-10-29 2014-11-18 26157 ENSG00000106560 OTTHUMG00000157488 uc003who.4 AL110151 NM_015660 CCDS5905 Q9UG22 15474311 GIMAP2 608085 +HGNC:30975 GIMAP3P GTPase, IMAP family member 3 pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 "GIMAP3|IAN4P" immune-associated nucleotide-binding protein 4 pseudogene GTPases, IMAP 580 2004-10-29 2015-09-10 474345 ENSG00000177590 OTTHUMG00000158113 AJ580951 NG_026525 15474311 PGOHUM00000302489 +HGNC:21872 GIMAP4 GTPase, IMAP family member 4 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "HIMAP4|FLJ11110|IMAP4|IAN1" immune-associated nucleotide-binding protein 1 GTPases, IMAP 580 2004-10-29 2015-08-25 55303 ENSG00000133574 OTTHUMG00000157475 uc003whl.4 AK001972 NM_018326 CCDS5904 Q9NUV9 "15474311|18701445" MGI:1349656 RGD:628765 GIMAP4 608087 +HGNC:18005 GIMAP5 GTPase, IMAP family member 5 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "HIMAP3|IAN5" immune-associated nucleotide-binding protein 5 IAN4L1 immune associated nucleotide 4 like 1 (mouse) GTPases, IMAP 580 2002-01-16 2004-10-30 2004-10-29 2015-09-10 55340 ENSG00000196329 OTTHUMG00000157542 uc064jdz.2 AK002158 NM_018384 CCDS5907 Q96F15 MGI:2442232 RGD:628871 GIMAP5 608086 +HGNC:21918 GIMAP6 GTPase, IMAP family member 6 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "FLJ22690|IAN6" immune-associated nucleotide-binding protein 6 GTPases, IMAP 580 2004-10-29 2014-11-19 474344 ENSG00000133561 OTTHUMG00000159137 uc003whn.4 AK026343 NM_024711 "CCDS34778|CCDS59087|CCDS75676" Q6P9H5 15474311 MGI:1918876 RGD:1305041 GIMAP6 616960 +HGNC:22404 GIMAP7 GTPase, IMAP family member 7 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "MGC27027|IAN7" immune-associated nucleotide-binding protein 7 GTPases, IMAP 580 2004-10-29 2015-09-10 168537 ENSG00000179144 OTTHUMG00000157626 uc003whk.4 BC027613 NM_153236 CCDS5903 Q8NHV1 15474311 MGI:1349657 RGD:1565750 GIMAP7 616961 +HGNC:21792 GIMAP8 GTPase, IMAP family member 8 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "DKFZp667I133|hIAN6|IAN9" immune-associated nucleotide-binding protein 9 GTPases, IMAP 580 2004-10-29 2015-08-25 155038 ENSG00000171115 OTTHUMG00000158327 uc003whj.4 AL834361 NM_175571 CCDS34777 Q8ND71 15474311 MGI:2685303 RGD:1564570 GIMAP8 616962 +HGNC:44141 GIMD1 GIMAP family P-loop NTPase domain containing 1 protein-coding gene gene with protein product Approved 4q24 04q24 2012-07-02 2012-07-02 2015-09-10 100507096 ENSG00000250298 OTTHUMG00000161071 uc062yvh.1 DN831977 NM_001195138 CCDS82942 P0DJR0 MGI:3647547 RGD:1563706 +HGNC:25959 GIN1 gypsy retrotransposon integrase 1 protein-coding gene gene with protein product Approved 5q21.1 05q21.1 "FLJ20125|GIN-1|TGIN1" "gypsy integrase 1|Ty3/Gypsy integrase 1" ZH2C2 zinc finger, H2C2 domain containing 2006-12-21 2007-06-13 2007-06-13 2015-08-25 54826 ENSG00000145723 OTTHUMG00000162811 uc003koa.2 BC015325 NM_017676 CCDS43349 Q9NXP7 11470852 MGI:2182036 RGD:1307449 GIN1 +HGNC:14252 GINGF2 gingival fibromatosis, hereditary, 2 phenotype phenotype only Approved 5q13-q22 05q13-q22 "GGF2|HGF2" 2001-01-02 2008-05-15 64644 11386754 605544 +HGNC:16333 GINGF3 gingival fibromatosis, hereditary, 3 phenotype phenotype only Approved 2p23.3-p22.3 02p23.3-p22.3 2014-11-28 2014-11-28 780916 "16098013|19633868" 609955 +HGNC:37734 GINGF4 gingival fibromatosis, hereditary, 4 phenotype phenotype only Approved 11p15 11p15 2010-02-09 2011-02-10 100124414 17075716 611010 +HGNC:21074 GINM1 glycoprotein integral membrane 1 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 dJ12G14.2 C6orf72 chromosome 6 open reading frame 72 2003-11-26 2012-07-20 2012-07-20 2016-10-05 116254 ENSG00000055211 OTTHUMG00000015789 uc003qmq.2 BC014320 NM_138785 CCDS5216 Q9NU53 MGI:2384905 RGD:1309759 GINM1 +HGNC:28980 GINS1 GINS complex subunit 1 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "KIAA0186|PSF1" GINS complex subunit 1 (Psf1 homolog) GINS complex 931 2006-05-04 2016-03-21 2016-03-21 9837 ENSG00000101003 OTTHUMG00000032124 uc002wuv.2 BC012542 NM_021067 CCDS33451 Q14691 "8724849|8786132" MGI:1916520 RGD:1562246 GINS1 610608 +HGNC:24575 GINS2 GINS complex subunit 2 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 "PSF2|Pfs2" GINS complex subunit 2 (Psf2 homolog) GINS complex 931 2006-05-04 2016-03-21 2016-03-21 51659 ENSG00000131153 OTTHUMG00000137646 uc002fja.4 BC003186 NM_016095 CCDS10953 Q9Y248 "11042152|10810093" MGI:1921019 RGD:1311055 GINS2 610609 +HGNC:25851 GINS3 GINS complex subunit 3 protein-coding gene gene with protein product Approved 16q21 16q21 "FLJ13912|PSF3" GINS complex subunit 3 (Psf3 homolog) GINS complex 931 2006-05-04 2016-03-21 2016-03-21 64785 ENSG00000181938 OTTHUMG00000133486 uc002enh.4 BC005879 NM_022770 "CCDS10796|CCDS45498|CCDS45499" Q9BRX5 12477932 MGI:1926083 RGD:1308153 GINS3 610610 +HGNC:28226 GINS4 GINS complex subunit 4 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "MGC14799|SLD5" GINS complex subunit 4 (Sld5 homolog) GINS complex 931 2006-05-04 2016-03-21 2016-03-21 84296 ENSG00000147536 OTTHUMG00000164079 uc003xnx.3 BC005995 NM_032336 CCDS6116 Q9BRT9 20070258 MGI:1923847 RGD:1307397 GINS4 610611 +HGNC:4270 GIP gastric inhibitory polypeptide protein-coding gene gene with protein product Approved 17q21.32 17q21.32 glucose-dependent insulinotropic polypeptide Endogenous ligands 542 1988-07-25 2016-10-05 2695 ENSG00000159224 OTTHUMG00000161171 uc002iol.2 NM_004123 CCDS11542 P09681 2739653 MGI:107504 RGD:2709 GIP 137240 +HGNC:1226 GIPC1 GIPC PDZ domain containing family member 1 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "TIP-2|Hs.6454|GIPC|SEMCAP|GLUT1CBP|SYNECTIN|NIP" "C19orf3|RGS19IP1" "chromosome 19 open reading frame 3|regulator of G-protein signalling 19 interacting protein 1|GIPC PDZ domain containing family, member 1" PDZ domain containing 1220 1998-12-01 2005-06-28 2015-11-18 2016-10-05 10755 ENSG00000123159 OTTHUMG00000182248 uc002myt.5 AF089816 XM_017026147 "CCDS12310|CCDS12311" O14908 "9770488|9482110" MGI:1926252 RGD:68338 GIPC1 605072 +HGNC:18177 GIPC2 GIPC PDZ domain containing family member 2 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "FLJ20075|SEMCAP-2" semaphorin cytoplasmic domain associated protein 2 GIPC PDZ domain containing family, member 2 PDZ domain containing 1220 2005-06-28 2015-11-18 2015-11-18 54810 ENSG00000137960 OTTHUMG00000041145 uc001dik.4 AB073737 NM_017655 CCDS685 Q8TF65 11836570 MGI:1889209 RGD:1560751 GIPC2 +HGNC:18183 GIPC3 GIPC PDZ domain containing family member 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 DFNB95 "C19orf64|DFNB72|DFNB15" "chromosome 19 open reading frame 64|deafness, autosomal recessive 72|deafness, autosomal recessive 15|GIPC PDZ domain containing family, member 3" PDZ domain containing 1220 2005-06-28 2015-11-18 2015-11-18 126326 ENSG00000179855 OTTHUMG00000167425 uc002lyd.5 AB073738 NM_133261 CCDS32871 Q8TF64 "11836571|21326233" MGI:2387006 RGD:1563255 GIPC3 608792 270208 +HGNC:4271 GIPR gastric inhibitory polypeptide receptor protein-coding gene gene with protein product Approved 19q13.32 19q13.32 Glucagon receptor family 269 1994-04-28 2016-01-15 2696 ENSG00000010310 OTTHUMG00000182129 uc002pcu.2 XM_011526709 "CCDS12671|CCDS82367" P48546 7490109 MGI:1352753 RGD:2689 GIPR 137241 objectId:248 +HGNC:4272 GIT1 GIT ArfGAP 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "G protein-coupled receptor kinase interactor 1|G protein-coupled receptor kinase interacting ArfGAP 1" "ArfGAPs|Ankyrin repeat domain containing" "395|403" 2000-07-31 2016-03-14 2016-10-05 28964 ENSG00000108262 OTTHUMG00000132730 uc002hef.3 AF124490 NM_014030 "CCDS11250|CCDS42290" Q9Y2X7 "9826657|10896954" MGI:1927140 RGD:69331 GIT1 608434 +HGNC:4273 GIT2 GIT ArfGAP 2 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "KIAA0148|PKL" Paxillin kinase linker "G protein-coupled receptor kinase interactor 2|G protein-coupled receptor kinase interacting ArfGAP 2" "ArfGAPs|Ankyrin repeat domain containing" "395|403" 2000-07-31 2016-03-14 2016-10-05 9815 ENSG00000139436 OTTHUMG00000169313 uc001tps.3 AF124491 NM_057169 "CCDS9138|CCDS9139|CCDS44968|CCDS44969|CCDS55884|CCDS81736|CCDS81737" Q14161 "9826657|10896954" MGI:1347053 RGD:1359708 GIT2 608564 +HGNC:4274 GJA1 gap junction protein alpha 1 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "CX43|ODD|ODOD|SDTY3" "oculodentodigital dysplasia (syndactyly type III)|connexin 43" "ODDD|GJAL" "gap junction protein, alpha-like|gap junction protein, alpha 1, 43kDa (connexin 43)|gap junction protein, alpha 1, 43kDa" Gap junction proteins 314 1990-08-03 2015-11-09 2015-11-09 2697 ENSG00000152661 OTTHUMG00000015479 uc003pyr.4 BC026329 NM_000165 CCDS5123 P17302 "10331943|1646158" MGI:95713 RGD:2690 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org/ GJA1 121014 122102 objectId:728 +HGNC:4275 GJA1P1 gap junction protein alpha 1 pseudogene 1 pseudogene pseudogene Approved 5q21.3 05q21.3 "gap junction protein, alpha 1, 43kD (connexin 43) pseudogene 1|gap junction protein, alpha 1, 43kDa (connexin 43) pseudogene 1|gap junction protein, alpha 1, 43kDa pseudogene 1" 1991-01-30 2015-11-09 2015-11-09 2698 ENSG00000176857 OTTHUMG00000162850 M65189 NG_003029 "1646158|11741837" PGOHUM00000251326 +HGNC:4276 GJA2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-02-28 +HGNC:4277 GJA3 gap junction protein alpha 3 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 CX46 connexin 46 CZP3 "gap junction protein, alpha 3, 46kD (connexin 46)|gap junction protein, alpha 3, 46kDa (connexin 46)|gap junction protein, alpha 3, 46kDa" Gap junction proteins 314 1990-02-12 2015-11-09 2015-11-09 2700 ENSG00000121743 OTTHUMG00000016510 uc001umx.2 AF075290 NM_021954 CCDS9289 Q9Y6H8 "10205266|7342922" MGI:95714 RGD:621820 GJA3 121015 122114 objectId:730 +HGNC:4278 GJA4 gap junction protein alpha 4 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 CX37 connexin 37 "gap junction protein, alpha 4, 37kD (connexin 37)|gap junction protein, alpha 4, 37kDa (connexin 37)|gap junction protein, alpha 4, 37kDa" Gap junction proteins 314 1991-07-11 2015-11-09 2016-10-05 2701 ENSG00000187513 OTTHUMG00000004050 uc001bya.3 M96789 NM_002060 CCDS30669 P35212 "9843209|7680674" MGI:95715 RGD:2691 GJA4 121012 objectId:725 +HGNC:4279 GJA5 gap junction protein alpha 5 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 CX40 connexin 40 "gap junction protein, alpha 5, 40kD (connexin 40)|gap junction protein, alpha 5, 40kDa (connexin 40)|gap junction protein, alpha 5, 40kDa" Gap junction proteins 314 1991-07-11 2015-11-09 2015-11-09 2702 ENSG00000265107 OTTHUMG00000014020 uc031uum.2 NM_181703 CCDS929 P36382 MGI:95716 RGD:2692 GJA5 121013 138503 objectId:726 +HGNC:32542 GJA6P gap junction protein alpha 6 pseudogene pseudogene pseudogene Approved Xp22.13 Xp22.13 gap junction protein, alpha 6, pseudogene Gap junction proteins 314 2007-11-27 2015-11-09 2016-10-05 100126825 ENSG00000236187 OTTHUMG00000021215 NG_007152 15611570 MGI:95717 PGOHUM00000241658 +HGNC:4281 GJA8 gap junction protein alpha 8 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 CX50 connexin 50 "CAE1|CZP1|CAE" "gap junction protein, alpha 8, 50kD (connexin 50)|gap junction protein, alpha 8, 50kDa (connexin 50)|gap junction protein, alpha 8, 50kDa" Gap junction proteins 314 1995-11-29 2015-11-09 2016-10-05 2703 ENSG00000121634 OTTHUMG00000024085 uc057kfk.1 U34802 NM_005267 CCDS30834 P48165 "9497259|7796604" MGI:99953 RGD:628890 GJA8 600897 122118 objectId:732 +HGNC:19155 GJA9 gap junction protein alpha 9 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "CX59|CX58" connexin 59 GJA10 "gap junction protein, alpha 10, 59kDa|gap junction protein, alpha 9, 59kDa" Gap junction proteins 314 2002-09-05 2007-11-06 2015-11-09 2016-10-05 81025 ENSG00000131233 OTTHUMG00000000482 uc057ezp.1 AF179597 NM_030772 CCDS432 P57773 GJA9 611923 objectId:733 +HGNC:16995 GJA10 gap junction protein alpha 10 protein-coding gene gene with protein product Approved 6q15 06q15 CX62 connexin 62 gap junction protein, alpha 10, 62kDa Gap junction proteins 314 2007-11-06 2015-11-09 2015-11-09 84694 ENSG00000135355 OTTHUMG00000015210 uc011eaa.3 AF296766 NM_032602 CCDS5025 Q969M2 MGI:1339969 RGD:1309630 GJA10 611924 objectId:734 +HGNC:13295 GJA11 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4283 GJB1 gap junction protein beta 1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 CX32 "Charcot-Marie-Tooth neuropathy, X-linked|connexin 32" "CMTX1|CMTX" "gap junction protein, beta 1, 32kD (connexin 32, Charcot-Marie-Tooth neuropathy, X-linked)|gap junction protein, beta 1, 32kDa (connexin 32, Charcot-Marie-Tooth neuropathy, X-linked)|gap junction protein, beta 1, 32kDa (connexin 32)|gap junction protein, beta 1, 32kDa" Gap junction proteins 314 1990-02-12 2015-11-09 2016-10-12 2705 ENSG00000169562 OTTHUMG00000021797 uc004dzf.4 X04325 NM_000166 CCDS14408 P08034 1319395 MGI:95719 RGD:61926 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LOVD GJB1 homepage|https://grenada.lumc.nl/LOVD2/mendelian_genes/home.php?select_db=GJB1|LRG_245|http://www.lrg-sequence.org/LRG/LRG_245" GJB1 304040 122124 objectId:723 +HGNC:4284 GJB2 gap junction protein beta 2 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "CX26|NSRD1" connexin 26 "DFNB1|DFNA3" "gap junction protein, beta 2, 26kD (connexin 26)|gap junction protein, beta 2, 26kDa (connexin 26)|gap junction protein, beta 2, 26kDa" Gap junction proteins 314 1990-02-12 2015-11-09 2016-10-05 2706 ENSG00000165474 OTTHUMG00000016513 uc001umy.4 M86849 XM_011535049 CCDS9290 P29033 9139825 MGI:95720 RGD:728891 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|The Connexin-deafness homepage|http://davinci.crg.es/deafness/|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=GJB2" GJB2 121011 122129 objectId:716 +HGNC:4285 GJB3 gap junction protein beta 3 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 CX31 connexin 31 "DFNA2|EKV" "gap junction protein, beta 3, 31kD (connexin 31)|gap junction protein, beta 3, 31kDa (connexin 31)|erythrokeratodermia variabilis|gap junction protein, beta 3, 31kDa" Gap junction proteins 314 1991-07-12 2015-11-09 2016-10-05 2707 ENSG00000188910 OTTHUMG00000004051 uc001bxx.4 BC012918 NM_024009 CCDS384 O75712 "9843210|9704026" MGI:95721 RGD:2695 "The Connexin-deafness homepage|http://davinci.crg.es/deafness/|Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org/" GJB3 603324 122135 objectId:720 +HGNC:4286 GJB4 gap junction protein beta 4 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 CX30.3 connexin 30.3 "gap junction protein, beta 4 (connexin 30.3)|gap junction protein, beta 4|gap junction protein, beta 4, 30.3kDa" Gap junction proteins 314 1998-08-06 2015-11-09 2016-10-05 127534 ENSG00000189433 OTTHUMG00000004052 uc001bxv.1 NM_153212 CCDS383 Q9NTQ9 MGI:95722 RGD:621829 GJB4 605425 122139 objectId:719 +HGNC:4287 GJB5 gap junction protein beta 5 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 CX31.1 connexin 31.1 "gap junction protein, beta 5 (connexin 31.1)|gap junction protein, beta 5|gap junction protein, beta 5, 31.1kDa" Gap junction proteins 314 1998-08-06 2015-11-09 2015-11-09 2709 ENSG00000189280 OTTHUMG00000004053 uc001bxu.4 BC004379 NM_005268 CCDS382 O95377 9843209 MGI:95723 RGD:2696 GJB5 604493 objectId:721 +HGNC:4288 GJB6 gap junction protein beta 6 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "EDH|HED|CX30" connexin 30 "DFNA3|ED2" "ectodermal dysplasia 2, hidrotic (Clouston syndrome)|gap junction protein, beta 6 (connexin 30)|gap junction protein, beta 6|gap junction protein, beta 6, 30kDa" Gap junction proteins 314 1999-07-30 2015-11-09 2016-10-05 10804 ENSG00000121742 OTTHUMG00000016515 uc001unc.5 AJ005585 XM_017020357 CCDS9291 O95452 "10471490|8845850" MGI:107588 RGD:621830 "The Connexin-deafness homepage|http://davinci.crg.es/deafness/|Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org/|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=GJB6" GJB6 604418 122142 objectId:717 +HGNC:16690 GJB7 gap junction protein beta 7 protein-coding gene gene with protein product Approved 6q15 06q15 "CX25|bA136M9.1" connexin 25 "gap junction protein, beta 7|gap junction protein, beta 7, 25kDa" Gap junction proteins 314 2003-11-26 2015-11-09 2015-11-09 375519 ENSG00000164411 OTTHUMG00000015166 uc003plo.3 AJ414563 NM_198568 CCDS5008 Q6PEY0 GJB7 611921 objectId:715 +HGNC:4280 GJC1 gap junction protein gamma 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 CX45 connexin 45 GJA7 "gap junction protein, alpha 7, 45kDa|gap junction protein, gamma 1, 45kDa" Gap junction proteins 314 1999-07-30 2007-11-06 2015-11-09 2015-11-09 10052 ENSG00000182963 OTTHUMG00000179861 uc060gbz.1 U03493 NM_005497 CCDS11487 P36383 7966354 MGI:95718 RGD:628889 GJC1 608655 objectId:729 +HGNC:17494 GJC2 gap junction protein gamma 2 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "CX47|CX46.6|SPG44" connexin 47 GJA12 "gap junction protein, alpha 12, 47kDa|gap junction protein, gamma 2, 47kDa" Gap junction proteins 314 2002-09-05 2007-11-06 2015-11-09 2016-10-05 57165 ENSG00000198835 OTTHUMG00000039771 uc001hsk.4 AF014643 NM_020435 CCDS1569 Q5T442 19056803 MGI:2153060 RGD:1562712 GJC2 608803 122110 objectId:731 +HGNC:17495 GJC3 gap junction protein gamma 3 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 CX30.2 connexin 30.2 GJE1 "gap junction protein, epsilon 1, 29kDa|gap junction protein, gamma 3, 30.2kDa" Gap junction proteins 314 2004-04-21 2007-11-06 2015-11-09 2015-11-09 349149 ENSG00000176402 OTTHUMG00000156649 uc011kjd.2 AF503615 NM_181538 CCDS34697 Q8NFK1 MGI:2153041 RGD:727930 GJC3 611925 objectId:718 +HGNC:19154 GJD2 gap junction protein delta 2 protein-coding gene gene with protein product Approved 15q14 15q14 CX36 connexin 36 GJA9 "gap junction protein, alpha 9, 36kDa|gap junction protein, delta 2, 36kDa" Gap junction proteins 314 2007-01-16 2007-11-06 2015-11-09 2016-10-05 57369 ENSG00000159248 OTTHUMG00000129674 uc001zis.3 AB037509 XM_017022438 CCDS10040 Q9UKL4 10462698 MGI:1334209 RGD:2694 GJD2 607058 objectId:724 +HGNC:19147 GJD3 gap junction protein delta 3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "CX31.9|GJA11|Cx30.2" connexin 31.9 GJC1 "gap junction protein, chi 1, 31.9kDa|gap junction protein, delta 3, 31.9kDa" Gap junction proteins 314 2002-08-29 2007-11-06 2015-11-09 2016-10-05 125111 ENSG00000183153 OTTHUMG00000179633 uc010cwz.4 AF514298 NM_152219 CCDS58547 Q8N144 12176752 MGI:2384150 RGD:1308942 GJD3 607425 objectId:722 +HGNC:23296 GJD4 gap junction protein delta 4 protein-coding gene gene with protein product Approved 10p11.21 10p11.21 "CX40.1|FLJ90023" connexin 40.1 gap junction protein, delta 4, 40.1kDa Gap junction proteins 314 2007-11-06 2015-11-09 2016-10-05 219770 ENSG00000177291 OTTHUMG00000017957 uc001iyy.1 AJ414564 NM_153368 CCDS7191 Q96KN9 12881038 MGI:2444990 RGD:628621 GJD4 611922 objectId:727 +HGNC:33251 GJE1 gap junction protein epsilon 1 other unknown Approved 6q24.1 06q24.1 CX23 gap junction protein, epsilon 1, 23kDa Gap junction proteins 314 2007-11-06 2015-11-09 2015-11-09 100126572 ENSG00000203733 OTTHUMG00000015706 uc063rxt.1 NG_033968 A6NN92 18849090 MGI:1923993 RGD:1598009 GJE1 objectId:714 +HGNC:4289 GK glycerol kinase protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 "GK1|GKD" Glycerol kinases 568 1986-01-01 2016-10-12 2710 ENSG00000198814 OTTHUMG00000021328 uc010ngj.4 X78711 NM_000167 "CCDS14225|CCDS35224|CCDS48090|CCDS75963" P32189 7987308 MGI:106594 RGD:70893 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=GK|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GK|LRG_848|http://www.lrg-sequence.org/LRG/LRG_848" GK 300474 122149 2.7.1.30 +HGNC:40255 GK-AS1 GK antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp21.2 Xp21.2 GK antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100873902 ENSG00000243055 OTTHUMG00000159434 uc064yll.1 +HGNC:41339 GK-IT1 GK intronic transcript 1 non-coding RNA RNA, long non-coding Approved Xp21.2 Xp21.2 GK intronic transcript 1 (non-protein coding) 2011-08-10 2015-02-25 2015-02-25 106480740 ENSG00000229331 OTTHUMG00000021324 uc064ylh.1 +HGNC:4291 GK2 glycerol kinase 2 protein-coding gene gene with protein product Approved 4q21.21 04q21.21 GKTA GKP2 glycerol kinase pseudogene 2 Glycerol kinases 568 1994-12-14 2002-10-04 2002-10-03 2016-10-05 2712 ENSG00000196475 OTTHUMG00000130199 uc003hlu.4 BC029820 NM_033214 CCDS3585 Q14410 7987308 MGI:1329027 RGD:1303263 GK2 600148 +HGNC:4292 GK3P glycerol kinase 3 pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 GKTB GKP3 glycerol kinase pseudogene 3 Glycerol kinases 568 1994-12-14 2006-09-21 2006-09-21 2016-10-05 2713 ENSG00000229894 OTTHUMG00000161293 BC066960 NG_000861 Q14409 7987308 600149 +HGNC:4295 GK4P glycerol kinase 4 pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 GKP6 glycerol kinase pseudogene 6 Glycerol kinases 568 1994-12-14 2006-09-21 2006-09-21 2006-09-21 2716 X78714 NG_001127 7987308 +HGNC:28635 GK5 glycerol kinase 5 (putative) protein-coding gene gene with protein product Approved 3q23 03q23 MGC40579 Glycerol kinases 568 2006-09-21 2006-09-21 2014-11-19 256356 ENSG00000175066 OTTHUMG00000133572 uc003euq.2 BX648681 NM_001039547 CCDS33871 Q6ZS86 12477932 MGI:2443336 RGD:1311223 GK5 +HGNC:23263 GK6P glycerol kinase 6 pseudogene pseudogene pseudogene Approved 4q26 04q26 "GK7P|GKP1" "glycerol kinase 7 pseudogene|glycerol kinase pseudogene 1" Glycerol kinases 568 2006-09-21 2006-09-21 2006-09-21 2014-11-19 201989 NG_004742 GK6P +HGNC:17496 GKAP1 G kinase anchoring protein 1 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 "GKAP42|FKSG21" cGMP-dependent protein kinase anchoring protein 42kDa 2004-05-19 2016-10-05 80318 ENSG00000165113 OTTHUMG00000020106 uc004amy.4 BC014476 NM_025211 "CCDS35049|CCDS47988" Q5VSY0 MGI:1891694 RGD:1306955 GKAP1 611356 +HGNC:23217 GKN1 gastrokine 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "AMP18|CA11|BRICD1" BRICHOS domain containing 1 BRICHOS domain containing 457 2003-10-24 2014-11-18 56287 ENSG00000169605 OTTHUMG00000129574 uc002sfc.4 AY139182 NM_019617 CCDS1891 Q9NS71 "12851218|11562744" MGI:1913533 RGD:735014 GKN1 606402 +HGNC:24588 GKN2 gastrokine 2 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "TFIZ1|PRO813|VLTI465|blottin|GDDR|BRICD1B" "down regulated in gastric cancer GDDR|BRICHOS domain containing 1B" BRICHOS domain containing 457 2007-01-29 2016-10-05 200504 ENSG00000183607 OTTHUMG00000152655 uc002sfa.3 AF494509 NM_182536 CCDS33215 Q86XP6 "15774165|15924415|16888721" MGI:1913534 RGD:1311934 GKN2 +HGNC:37701 GKN3P gastrokine 3, pseudogene pseudogene pseudogene Approved 2p13.3 02p13.3 2010-01-21 2010-01-21 100132413 ENSG00000283586 OTTHUMG00000191776 NG_016576 P0CG01 +HGNC:4293 GKP4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-09-21 +HGNC:4294 GKP5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4296 GLA galactosidase alpha protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 GALA 2001-06-22 2015-11-18 2016-10-12 2717 ENSG00000102393 OTTHUMG00000022026 uc004ehl.2 X16889 NM_000169 CCDS14484 P06280 MGI:1347344 RGD:1589721 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GLA|LRG_672|http://www.lrg-sequence.org/LRG/LRG_672" GLA 300644 122153 3.2.1.22 +HGNC:4297 GLAT entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-25 +HGNC:4298 GLB1 galactosidase beta 1 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 EBP ELNR1 "elastin receptor 1, 67kDa|elastin receptor 1 (67kD)|galactosidase, beta 1" 2001-06-22 2015-11-05 2015-11-05 2720 ENSG00000170266 OTTHUMG00000155781 uc003cfi.2 M22590 NM_000404 "CCDS43061|CCDS43062|CCDS46785" P16278 "110522|3143362" MGI:88151 RGD:1597145 GLB1 611458 122156 3.2.1.23 +HGNC:28129 GLB1L galactosidase beta 1 like protein-coding gene gene with protein product Approved 2q35 02q35 MGC10771 galactosidase, beta 1-like 2004-01-13 2015-11-12 2016-10-05 79411 ENSG00000163521 OTTHUMG00000133133 uc002vkn.5 NM_024506 "CCDS2437|CCDS74657" Q6UWU2 12975309 MGI:1921827 RGD:1309474 GLB1L +HGNC:25129 GLB1L2 galactosidase beta 1 like 2 protein-coding gene gene with protein product Approved 11q25 11q25 galactosidase, beta 1-like 2 2008-01-29 2015-11-12 2015-11-12 89944 ENSG00000149328 OTTHUMG00000167179 uc001qhp.3 NM_138342 CCDS31724 Q8IW92 12975309 MGI:2388283 RGD:1564436 GLB1L2 +HGNC:25147 GLB1L3 galactosidase beta 1 like 3 protein-coding gene gene with protein product Approved 11q25 11q25 FLJ90231 "galactosidase, beta 1-like 3|galactosidase beta 1-like 3" 2006-07-04 2015-11-12 2015-11-12 112937 ENSG00000166105 OTTHUMG00000133524 uc009zdf.4 NM_138416 CCDS44780 Q8NCI6 12477932 MGI:1918143 RGD:1561462 GLB1L3 +HGNC:4300 GLC# entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4302 GLC1B glaucoma 1, open angle, B (adult-onset) phenotype phenotype only Approved 2cen-q13 02cen-q13 1996-05-30 2008-05-15 2722 8812425 606689 +HGNC:4303 GLC1C glaucoma 1, open angle, C phenotype phenotype only Approved 3q21-q24 03q21-q24 1996-08-21 1997-02-27 2723 9012402 601682 +HGNC:4304 GLC1D glaucoma 1, open angle, D (adult-onset) phenotype phenotype only Approved 8q23 08q23 1997-11-05 1998-05-11 2724 602429 +HGNC:23256 GLC1H glaucoma 1, open angle, H (adult-onset) phenotype phenotype only Approved 2p16.3-p15 02p16.3-p15 2004-02-04 2006-10-30 399564 611276 +HGNC:31912 GLC1I glaucoma 1, open angle, I phenotype phenotype only Approved 15q11-q13 15q11-q13 2005-02-04 2005-02-04 497188 15914615 609745 +HGNC:26986 GLC1J glaucoma 1, open angle, J (juvenile-onset) phenotype phenotype only Approved 9q22 09q22 JOAG2 2005-07-01 2005-08-09 574078 15108121 608695 +HGNC:21341 GLC1K glaucoma 1, open angle, K (juvenile-onset) phenotype phenotype only Approved 20p12 20p12 JOAG3 2005-07-01 2005-08-09 574077 15108121 608696 +HGNC:33120 GLC1L glaucoma 1, open angle, L (adult-onset) phenotype phenotype only Approved 3p22-p21 03p22-p21 2006-08-24 2006-08-29 751781 15906098 +HGNC:33162 GLC1M glaucoma 1, open angle, M (juvenile-onset) phenotype phenotype only Approved 5q 05q 2006-10-31 2007-07-27 777643 "16518310|17563728" 610535 +HGNC:33163 GLC1N glaucoma 1, open angle, N (juvenile-onset) phenotype phenotype only Approved 15q22-q24 15q22-q24 2006-11-01 2006-12-06 777645 17122119 611274 +HGNC:41965 GLC1P glaucoma 1, open angle, P phenotype phenotype only Approved 12q14 12q14 2011-05-24 2011-06-22 101448070 21447600 +HGNC:41966 GLC1Q glaucoma 1, open angle, Q phenotype phenotype only Approved 4q35.1-q35.2 04q35.1-q35.2 2013-05-09 2013-05-09 21896847 +HGNC:4307 GLC2A glaucoma 2, angle closure phenotype phenotype only Approved reserved reserved 1996-08-21 2011-02-10 2727 +HGNC:4309 GLC3B glaucoma 3, primary infantile, B phenotype phenotype only Approved 1p36 01p36 1996-08-21 2003-10-10 2728 8842741 600975 +HGNC:30028 GLC3C glaucoma 3, primary congenital, C phenotype phenotype only Approved 14q24.3-q31.1 14q24.3-q31.1 2004-02-04 2011-02-10 399565 613085 +HGNC:18713 GLCCI1 glucocorticoid induced 1 protein-coding gene gene with protein product Approved 7p21.3 07p21.3 "GIG18|FAM117C|TSSN1" glucocorticoid induced transcript 1 2002-06-11 2015-02-16 2016-10-05 113263 ENSG00000106415 OTTHUMG00000151984 uc003srk.5 BC050291 NM_138426 CCDS34601 Q86VQ1 MGI:2179717 RGD:1563612 GLCCI1 614283 +HGNC:17855 GLCE glucuronic acid epimerase protein-coding gene gene with protein product Approved 15q23 15q23 "KIAA0836|HSEPI" heparan sulfate epimerase "D-glucuronyl C5-epimerase|UDP-glucuronic acid epimerase" 2006-06-13 2007-01-30 2014-11-19 26035 ENSG00000138604 OTTHUMG00000172084 uc002ary.2 AB020643 NM_015554 CCDS32277 O94923 15853773 MGI:2136405 RGD:1565253 GLCE 612134 5.1.3.12 +HGNC:4313 GLDC glycine decarboxylase protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "GCSP|NKH" "glycine cleavage system protein P|glycine dehydrogenase" "glycine dehydrogenase (decarboxylating; glycine decarboxylase, glycine cleavage system protein P)|glycine dehydrogenase (decarboxylating)" 1992-04-08 2016-03-15 2016-10-12 2731 ENSG00000178445 OTTHUMG00000019524 uc003zkc.4 D90239 NM_000170 CCDS34987 P23378 "1993704|1996985" MGI:1341155 RGD:1308660 LRG_643|http://www.lrg-sequence.org/LRG/LRG_643 GLDC 238300 122160 1.4.4.2 +HGNC:4314 GLDCP1 glycine decarboxylase pseudogene 1 pseudogene pseudogene Approved 4q12 04q12 GLDCP "glycine dehydrogenase (decarboxylase) pseudogene|glycine dehydrogenase (decarboxylase) pseudogene 1" 1994-12-09 2010-01-19 2016-06-27 2016-06-27 2732 ENSG00000248590 OTTHUMG00000160768 NG_003012 "7945295|2268343" PGOHUM00000245917 +HGNC:29514 GLDN gliomedin protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "CRG-L2|CLOM|colmedin|UNC-112" COLM collomin 2004-05-18 2005-10-06 2005-10-06 2016-10-05 342035 ENSG00000186417 OTTHUMG00000131746 uc002aba.4 AY358144 NM_181789 "CCDS10140|CCDS81882" Q6ZMI3 "16039564|12642876" MGI:2388361 RGD:727879 GLDN 608603 +HGNC:4315 GLE1 GLE1, RNA export mediator protein-coding gene gene with protein product Approved 9q34.11 09q34.11 hGLE1 "GLE1L|LCCS1" "GLE1 (yeast homolog)-like, RNA export mediator|GLE1 RNA export mediator-like (yeast)|GLE1 RNA export mediator (yeast)|lethal congenital contracture syndrome 1|GLE1 RNA export mediator homolog (yeast)" Nucleoporins 1051 1998-06-18 2007-10-04 2015-11-27 2016-10-12 2733 ENSG00000119392 OTTHUMG00000020749 uc004bvj.4 AF058922 NM_001003722 "CCDS6904|CCDS35154" Q53GS7 "9618489|18204449" MGI:1921662 RGD:1307329 LRG_484|http://www.lrg-sequence.org/LRG/LRG_484 GLE1 603371 160257 +HGNC:4316 GLG1 golgi glycoprotein 1 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "MG-160|ESL-1|CFR-1" golgi apparatus protein 1 1995-09-11 2010-02-12 2016-01-15 2734 ENSG00000090863 OTTHUMG00000177174 uc002fcx.4 NM_012201 "CCDS32485|CCDS45526|CCDS45527" Q92896 "8530051|7531823" MGI:104967 RGD:69345 GLG1 600753 +HGNC:4317 GLI1 GLI family zinc finger 1 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 GLI "glioma-associated oncogene homolog 1 (zinc finger protein)|glioma-associated oncogene family zinc finger 1" Zinc fingers C2H2-type 28 1986-01-01 2005-01-14 2009-03-05 2016-01-15 2735 ENSG00000111087 OTTHUMG00000167332 uc001snx.4 NM_005269 "CCDS8940|CCDS53806|CCDS53807" P08151 2850480 MGI:95727 RGD:621673 GLI1 165220 +HGNC:4318 GLI2 GLI family zinc finger 2 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "THP2|HPE9|THP1" "tax-responsive element-2 holding protein|tax helper protein 1|tax helper protein 2" "GLI-Kruppel family member GLI2|glioma-associated oncogene family zinc finger 2" Zinc fingers C2H2-type 28 1989-05-25 2009-03-05 2016-10-05 2736 ENSG00000074047 OTTHUMG00000153741 uc010flp.4 NM_005270 CCDS33283 P10070 "2850480|9557682" MGI:95728 RGD:1309270 GLI2 165230 138516 +HGNC:4319 GLI3 GLI family zinc finger 3 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "PAP-A|PAPA|PAPA1|PAPB|ACLS|PPDIV" "zinc finger protein GLI3|oncogene GLI3|DNA-binding protein" "GCPS|PHS" "Greig cephalopolysyndactyly syndrome|GLI-Kruppel family member GLI3|glioma-associated oncogene family zinc finger 3" Zinc fingers C2H2-type 28 1989-05-29 2009-03-05 2016-10-05 2737 ENSG00000106571 OTTHUMG00000023630 uc011kbh.3 NM_000168 CCDS5465 P10071 2118997 MGI:95729 RGD:620272 GLI3 165240 122167 +HGNC:4320 GLI4 GLI family zinc finger 4 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "HKR4|ZNF928" "GLI-Kruppel family member GLI4|glioma-associated oncogene family zinc finger 4" Zinc fingers C2H2-type 28 1989-05-29 2009-03-05 2015-09-10 2738 ENSG00000250571 OTTHUMG00000164952 uc003yxx.4 NM_138465 CCDS6398 P10075 2850480 RGD:1560906 GLI4 165280 1226 +HGNC:48823 GLIDR glioblastoma down-regulated RNA non-coding RNA RNA, long non-coding Approved 9p12 09p12 "MGC21881|TCONS_00015562" LINC01172 long intergenic non-protein coding RNA 1172 2014-01-13 2014-01-20 2014-01-20 2016-10-05 389741 ENSG00000278175 OTTHUMG00000189744 AK092305 NR_015363 23726844 +HGNC:17001 GLIPR1 GLI pathogenesis related 1 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 "RTVP1|GliPR" GLI pathogenesis-related 1 (glioma) 2002-12-04 2016-03-09 2016-10-05 11010 ENSG00000139278 OTTHUMG00000169757 uc001sxs.4 U16307 NM_006851 CCDS9011 P48060 "7607567|8973356" MGI:1920940 RGD:1305978 GLIPR1 602692 +HGNC:28392 GLIPR1L1 GLI pathogenesis related 1 like 1 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 MGC26856 GLI pathogenesis-related 1 like 1 2006-05-22 2016-03-09 2016-10-05 256710 ENSG00000173401 OTTHUMG00000169755 uc001sxn.4 BC014603 NM_152779 "CCDS9009|CCDS76578" Q6UWM5 12477932 "MGI:1916536|MGI:1914787|MGI:3620621" RGD:1563000 GLIPR1L1 610395 +HGNC:28592 GLIPR1L2 GLI pathogenesis-related 1 like 2 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 MGC39497 2006-05-22 2016-10-05 144321 ENSG00000180481 OTTHUMG00000169756 uc001sxr.3 BC029557 NM_152436 "CCDS9010|CCDS58258" Q4G1C9 12477932 "MGI:1916536|MGI:1914787|MGI:3620621" RGD:1310205 GLIPR1L2 610394 +HGNC:18007 GLIPR2 GLI pathogenesis related 2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 GAPR-1 C9orf19 "chromosome 9 open reading frame 19|GLI pathogenesis-related 2" 2002-01-23 2008-08-15 2016-03-16 2016-03-16 152007 ENSG00000122694 OTTHUMG00000019900 uc033cqe.1 AY039756 NM_022343 "CCDS6598|CCDS69595|CCDS75832|CCDS75833" Q9H4G4 "12137952|11865038" MGI:1917770 RGD:1583669 GLIPR2 607141 +HGNC:29525 GLIS1 GLIS family zinc finger 1 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 FLJ36155 Zinc fingers C2H2-type 28 2004-07-16 2014-11-18 148979 ENSG00000174332 OTTHUMG00000008079 uc001cvr.2 AK093474 NM_147193 CCDS582 Q8NBF1 "12042312|14500813" MGI:2386723 RGD:1308030 GLIS1 610378 +HGNC:29450 GLIS2 GLIS family zinc finger 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 NPHP7 nephrocystin-7 Zinc fingers C2H2-type 28 2004-07-16 2014-11-19 84662 ENSG00000126603 OTTHUMG00000129467 uc002cwc.2 AF325914 NM_032575 CCDS10511 Q9BZE0 "11741991|14500813|17618285" MGI:1932535 RGD:1309177 GLIS2 608539 168309 +HGNC:51381 GLIS2-AS1 GLIS2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 2014-10-23 2014-10-23 101926896 ENSG00000262686 OTTHUMG00000177619 "BX104227|AI694962" NR_110901 +HGNC:28510 GLIS3 GLIS family zinc finger 3 protein-coding gene gene with protein product Approved 9p24.2 09p24.2 MGC33662 ZNF515 zinc finger protein 515 Zinc fingers C2H2-type 28 2003-12-22 2004-07-16 2004-07-16 2014-11-19 169792 ENSG00000107249 OTTHUMG00000019463 uc003zhx.2 BC033899 NM_152629 "CCDS6451|CCDS43784" Q8NEA6 14500813 MGI:2444289 RGD:1565505 GLIS3 610192 165848 +HGNC:28260 GLIS3-AS1 GLIS3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p24.2 09p24.2 MGC16153 C9orf70 "chromosome 9 open reading frame 70|GLIS3 antisense RNA 1 (non-protein coding)" 2004-01-05 2011-08-31 2012-08-15 2012-10-12 84850 ENSG00000237009 OTTHUMG00000019461 uc003zia.4 BC007366 NM_032764 12477932 +HGNC:14373 GLMN glomulin, FKBP associated protein protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "FAP48|GLML|GVM|FKBPAP" VMGLOM venous malformation with glomus cells 2003-07-14 2004-07-01 2014-11-19 11146 ENSG00000174842 OTTHUMG00000010283 uc001dor.4 U73704 NM_007070 CCDS738 Q92990 8955134 MGI:2141180 RGD:1588600 GLMN 601749 122172 +HGNC:29436 GLMP glycosylated lysosomal membrane protein protein-coding gene gene with protein product Approved 1q22 01q22 "MGC31963|NCU-G1" kidney lysosomal membrane protein C1orf85 chromosome 1 open reading frame 85 2005-05-27 2015-01-09 2015-01-09 2015-01-09 112770 ENSG00000198715 OTTHUMG00000019789 BC011575 NM_144580 "CCDS1139|CCDS72947|CCDS72948|CCDS72949" Q8WWB7 "12975309|18021396|19489740" MGI:1913318 RGD:1303130 +HGNC:4323 GLO1 glyoxalase I protein-coding gene gene with protein product Approved 6p21.2 06p21.2 GLOD1 glyoxalase domain containing 1 2001-06-22 2016-10-05 2739 ENSG00000124767 OTTHUMG00000014636 uc003ooc.4 L07837 NM_006708 CCDS4837 Q04760 "8449929|7684374" MGI:95742 RGD:2702 GLO1 138750 4.4.1.5 +HGNC:14111 GLOD4 glyoxalase domain containing 4 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "CGI-150|HC71" C17orf25 chromosome 17 open reading frame 25 2004-06-24 2007-03-14 2007-03-14 2014-11-19 51031 ENSG00000167699 OTTHUMG00000177497 uc002fru.4 AF177342 NM_016080 CCDS32520 Q9HC38 "11642406|12528892" MGI:1914451 RGD:1307010 GLOD4 +HGNC:33358 GLOD5 glyoxalase domain containing 5 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 2007-03-14 2015-08-25 392465 ENSG00000171433 OTTHUMG00000024125 uc011mmh.3 NM_001080489 CCDS55410 A6NK44 MGI:1917074 RGD:1564596 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GLOD5 GLOD5 +HGNC:4324 GLP1R glucagon like peptide 1 receptor protein-coding gene gene with protein product Approved 6p21.2 06p21.2 glucagon-like peptide 1 receptor Glucagon receptor family 269 1993-03-11 2015-11-18 2016-10-05 2740 ENSG00000112164 OTTHUMG00000014638 uc003ooj.5 NM_002062 CCDS4839 P43220 MGI:99571 RGD:2703 GLP1R 138032 objectId:249 +HGNC:4325 GLP2R glucagon like peptide 2 receptor protein-coding gene gene with protein product Approved 17p13.1 17p13.1 glucagon-like peptide 2 receptor Glucagon receptor family 269 1999-02-23 2016-03-30 2016-10-05 9340 ENSG00000065325 OTTHUMG00000130269 uc002gmd.2 AF105367 XM_011524077 CCDS11150 O95838 9990065 MGI:2136733 RGD:620270 GLP2R 603659 objectId:250 +HGNC:4326 GLRA1 glycine receptor alpha 1 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 stiff person syndrome STHE glycine receptor, alpha 1 (startle disease/hyperekplexia) Glycine receptors 868 1990-06-15 2015-11-13 2015-11-13 2741 ENSG00000145888 OTTHUMG00000130121 uc003lur.4 XM_017009349 "CCDS4320|CCDS54942" P23415 "1355335|8298642" MGI:95747 RGD:2704 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=GLRA1 GLRA1 138491 122179 objectId:423 +HGNC:4327 GLRA2 glycine receptor alpha 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 GLR Glycine receptors 868 1989-05-23 2015-11-13 2015-11-13 2742 ENSG00000101958 OTTHUMG00000021166 uc010neq.4 XM_017029427 "CCDS14160|CCDS48085|CCDS55371" P23416 MGI:95748 RGD:2705 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GLRA2 GLRA2 305990 objectId:424 +HGNC:4328 GLRA3 glycine receptor alpha 3 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 Glycine receptors 868 1999-12-07 2015-11-13 2015-11-13 8001 ENSG00000145451 OTTHUMG00000149816 uc003ity.3 AF017724 XM_017008630 "CCDS3822|CCDS43283" O75311 9677400 MGI:95749 RGD:621229 GLRA3 600421 objectId:425 +HGNC:31715 GLRA4 glycine receptor alpha 4 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 Glycine receptors 868 2005-06-01 2015-11-13 2015-11-13 441509 ENSG00000188828 OTTHUMG00000022110 uc011mse.3 Z93848 NM_001024452 CCDS43980 Q5JXX5 MGI:95750 RGD:1564103 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GLRA4 GLRA4 objectId:426 +HGNC:4329 GLRB glycine receptor beta protein-coding gene gene with protein product Approved 4q32.1 04q32.1 Glycine receptors 868 1998-08-21 2015-11-13 2016-10-05 2743 ENSG00000109738 OTTHUMG00000161954 uc003ipj.3 U33267 NM_000824 "CCDS3796|CCDS54813" P48167 "9676428|8717357" MGI:95751 RGD:2706 GLRB 138492 122182 objectId:427 +HGNC:4330 GLRX glutaredoxin protein-coding gene gene with protein product Approved 5q15 05q15 "GRX|GRX1" thioltransferase glutaredoxin (thioltransferase) 1995-05-18 2015-11-13 2016-10-05 2745 ENSG00000173221 OTTHUMG00000121167 uc063fnd.1 NM_002064 CCDS4078 P35754 8838810 MGI:2135625 RGD:70951 GLRX 600443 +HGNC:16065 GLRX2 glutaredoxin 2 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 "GRX2|bA101E13.1" glutaredoxin (thioltransferase) 2 2001-08-24 2015-11-13 51022 ENSG00000023572 OTTHUMG00000035677 uc001gta.3 AF132495 NM_016066 "CCDS1380|CCDS1381" Q9NS18 11297543 MGI:1916617 RGD:1307950 GLRX2 606820 +HGNC:15987 GLRX3 glutaredoxin 3 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "PICOT|bA500G10.4|GRX3|GLRX4|GRX4" glutaredoxin 4 TXNL2 thioredoxin-like 2 2001-06-27 2007-08-16 2007-08-16 2016-10-05 10539 ENSG00000108010 OTTHUMG00000019267 uc001lkn.3 AJ010841 NM_006541 CCDS7661 O76003 "10636891|11124703" MGI:1353653 GLRX3 612754 +HGNC:49787 GLRX3P1 glutaredoxin 3 pseudogene 1 pseudogene pseudogene Approved 9p21.3 09p21.3 2014-02-14 2014-02-14 100418908 NG_023790 PGOHUM00000235984 +HGNC:49788 GLRX3P2 glutaredoxin 3 pseudogene 2 pseudogene pseudogene Approved 6p25.2 06p25.2 2014-02-14 2014-02-14 728344 ENSG00000216657 OTTHUMG00000014155 NG_022339 PGOHUM00000243473 +HGNC:20134 GLRX5 glutaredoxin 5 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "PR01238|GRX5" C14orf87 "chromosome 14 open reading frame 87|glutaredoxin 5 homolog (S. cerevisiae)" 2002-12-18 2005-11-11 2007-08-16 2016-10-05 51218 ENSG00000182512 OTTHUMG00000171636 uc001yem.2 AF113691 NM_016417 CCDS9936 Q86SX6 MGI:1920296 RGD:1308383 GLRX5 609588 169900 +HGNC:16544 GLRXP1 glutaredoxin pseudogene 1 pseudogene pseudogene Approved 20q11.23 20q11.23 bA425M5.1 GLRXP "glutaredoxin (thioltransferase) pseudogene|glutaredoxin (thioltransferase) pseudogene 1" 2001-09-17 2009-11-25 2016-06-27 2016-06-27 170522 ENSG00000228234 OTTHUMG00000032423 AL109614 NG_001013 PGOHUM00000296991 +HGNC:18376 GLRXP2 glutaredoxin pseudogene 2 pseudogene pseudogene Approved 14q32.11 14q32.11 glutaredoxin (thioltransferase) pseudogene 2 2002-12-19 2016-06-27 2016-06-27 171418 ENSG00000258544 OTTHUMG00000171018 AF358259 NG_001323 11702225 PGOHUM00000292747 +HGNC:34049 GLRXP3 glutaredoxin pseudogene 3 pseudogene pseudogene Approved 5q34 05q34 GLRXL "glutaredoxin (thioltransferase)-like|glutaredoxin (thioltransferase) pseudogene 3" 2008-04-03 2009-05-19 2016-06-27 2016-06-27 100132510 ENSG00000118990 OTTHUMG00000157505 NG_009942 GLRXP3 PGOHUM00000300811 +HGNC:4331 GLS glutaminase protein-coding gene gene with protein product Approved 2q32.2 02q32.2 "KIAA0838|GLS1" Ankyrin repeat domain containing 403 1989-02-07 2016-10-05 2744 ENSG00000115419 OTTHUMG00000132701 uc002usf.4 AB020645 XR_922905 "CCDS2308|CCDS58744" O94925 10048485 MGI:95752 RGD:2707 GLS 138280 objectId:2891 3.5.1.2 +HGNC:29570 GLS2 glutaminase 2 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "GA|GLS|LGA|hLGA" glutaminase 2 (liver, mitochondrial) Ankyrin repeat domain containing 403 2004-03-11 2015-12-04 2016-10-05 27165 ENSG00000135423 OTTHUMG00000140379 uc001slj.5 NM_013267 "CCDS8921|CCDS73482" Q9UI32 "11130979|10620514" MGI:2143539 RGD:620359 GLS2 606365 3.5.1.2 +HGNC:26483 GLT1D1 glycosyltransferase 1 domain containing 1 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 FLJ31978 Glycosyl transferases group 1 domain containing 427 2006-01-16 2016-10-05 144423 ENSG00000151948 OTTHUMG00000168437 uc058vcn.1 NM_144669 CCDS9265 Q96MS3 MGI:2442755 RGD:1304896 GLT1D1 +HGNC:23671 GLT6D1 glycosyltransferase 6 domain containing 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 GLTDC1 galactosyltransferase family 6 domain containing 1 Glycosyltransferase family 6 429 2003-12-01 2004-09-17 2004-09-16 2015-09-07 360203 ENSG00000204007 OTTHUMG00000020911 uc010nbd.1 AY336054 NM_182974 CCDS43900 Q7Z4J2 MGI:1918353 RGD:1311348 GLT6D1 613699 +HGNC:24870 GLT8D1 glycosyltransferase 8 domain containing 1 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "AD-017|FLJ14611" Glycosyltransferase family 8 436 2005-01-19 2015-09-11 55830 ENSG00000016864 OTTHUMG00000158759 uc003dfm.5 AY358579 NM_152932 CCDS2862 Q68CQ7 12975309 MGI:1923735 RGD:1359293 GLT8D1 +HGNC:24890 GLT8D2 glycosyltransferase 8 domain containing 2 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 FLJ31494 Glycosyltransferase family 8 436 2005-01-19 2015-09-07 83468 ENSG00000120820 OTTHUMG00000170120 uc001tki.2 BC022343 NM_031302 CCDS9096 Q9H1C3 MGI:1922032 RGD:1560432 GLT8D2 +HGNC:24867 GLTP glycolipid transfer protein protein-coding gene gene with protein product Approved 12q24.11 12q24.11 2006-01-06 2014-11-19 51228 ENSG00000139433 OTTHUMG00000169278 uc001tpm.3 "AF209704|AY372530" NM_016433 CCDS9136 Q9NZD2 "15287756|15901739" MGI:1929253 RGD:1564442 GLTP 608949 +HGNC:33756 GLTPD2 glycolipid transfer protein domain containing 2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 2007-12-19 2014-11-19 388323 ENSG00000182327 OTTHUMG00000177929 uc002fza.3 BC029290 NM_001014985 CCDS32534 A6NH11 MGI:2444527 RGD:1560459 GLTPD2 +HGNC:33991 GLTPP1 glycolipid transfer protein pseudogene 1 pseudogene pseudogene Approved 11p15.1 11p15.1 2008-02-11 2012-03-09 645312 ENSG00000255138 OTTHUMG00000166443 AY039109 NG_007407 +HGNC:4332 GLTSCR1 glioma tumor suppressor candidate region gene 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 2000-02-29 2016-10-05 29998 ENSG00000063169 OTTHUMG00000183263 uc002phh.4 AF182077 NM_015711 CCDS46134 Q9NZM4 "10708517|21555454" MGI:2154263 RGD:1306385 GLTSCR1 605690 +HGNC:51588 GLTSCR1-AS1 GLTSCR1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.33 19q13.33 2015-03-11 2015-03-11 106144534 ENSG00000269806 OTTHUMG00000183264 DB210983 +HGNC:21111 GLTSCR1L GLTSCR1 like protein-coding gene gene with protein product Approved 6p21.1 06p21.1 KIAA0240 "KIAA0240|GLTSCR1-like" 2003-11-21 2012-11-29 2015-11-18 2015-11-18 23506 ENSG00000112624 OTTHUMG00000014706 uc063onx.1 AL833540 NM_015349 CCDS34451 Q6AI39 MGI:2673855 RGD:1305680 +HGNC:4333 GLTSCR2 glioma tumor suppressor candidate region gene 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 PICT-1 2000-02-29 2016-10-05 29997 ENSG00000105373 OTTHUMG00000183059 uc002phm.3 AF182076 NM_015710 CCDS12705 Q9NZM5 "10708517|16971513|17657248" MGI:2154441 RGD:1303085 GLTSCR2 605691 +HGNC:51587 GLTSCR2-AS1 GLTSCR2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.33 19q13.33 2015-03-11 2015-03-11 106144593 ENSG00000269656 OTTHUMG00000183060 DB337897 NR_132382 +HGNC:4335 GLUD1 glutamate dehydrogenase 1 protein-coding gene gene with protein product Approved 10q23.2 10q23.2 GDH GLUD 1986-01-01 2014-11-19 2746 ENSG00000148672 OTTHUMG00000018666 uc001keh.4 M20867 NM_005271 CCDS7382 P00367 2757358 MGI:95753 RGD:2708 GLUD1 138130 122188 1.4.1.3 +HGNC:4337 GLUD1P2 glutamate dehydrogenase 1 pseudogene 2 pseudogene pseudogene Approved 10q11.22 10q11.22 GLUDP2 glutamate dehydrogenase pseudogene 2 1993-03-03 2010-01-18 2010-01-18 2015-01-29 100381203 OTTHUMG00000018156 "X66313|X66315|X66319" NG_016765 8486350 +HGNC:4338 GLUD1P3 glutamate dehydrogenase 1 pseudogene 3 pseudogene pseudogene Approved 10q22.2 10q22.2 Em:AC022400.11 "GLUDP3|C10orf102" "glutamate dehydrogenase pseudogene 3|chromosome 10 open reading frame 102" 1993-03-03 2010-01-18 2010-01-18 2016-02-12 2749 ENSG00000250959 OTTHUMG00000018477 X66316 NR_048575 8486350 +HGNC:4339 GLUD1P4 glutamate dehydrogenase 1 pseudogene 4 pseudogene pseudogene Approved 18q21.32 18q21.32 GLUDP4 glutamate dehydrogenase pseudogene 4 1993-04-30 2010-01-18 2010-01-18 2015-02-04 2750 ENSG00000267486 OTTHUMG00000179948 X66314 NG_005046 8486350 PGOHUM00000294799 +HGNC:4340 GLUD1P5 glutamate dehydrogenase 1 pseudogene 5 pseudogene pseudogene Approved 10p11.2 10p11.2 GLUDP5 glutamate dehydrogenase pseudogene 5 1993-04-30 2010-01-18 2010-01-18 2010-03-16 2751 X67491 NG_001129 "8486350|8314555" +HGNC:23610 GLUD1P6 glutamate dehydrogenase 1 pseudogene 6 pseudogene pseudogene Approved 10q11.22 not on reference assembly 10q11.22 not on reference assembly bK2173J9.1 GLUDP6 glutamate dehydrogenase pseudogene 6 2004-05-27 2010-01-18 2010-01-18 2015-02-04 414209 OTTHUMG00000018136 +HGNC:23636 GLUD1P7 glutamate dehydrogenase 1 pseudogene 7 pseudogene pseudogene Approved 10q11.22 10q11.22 bA342C24.3 GLUDP7 glutamate dehydrogenase pseudogene 7 2004-05-27 2010-01-18 2010-01-18 2015-02-04 414212 ENSG00000265366 OTTHUMG00000018100 NR_048574 +HGNC:23637 GLUD1P8 glutamate dehydrogenase 1 pseudogene 8 pseudogene pseudogene Approved 10q11.22 10q11.22 bA144G6.5 GLUDP8 glutamate dehydrogenase pseudogene 8 2004-05-27 2010-01-18 2010-01-18 2015-02-04 414213 ENSG00000265630 OTTHUMG00000018118 NG_032188 +HGNC:37696 GLUD1P9 glutamate dehydrogenase 1 pseudogene 9 pseudogene pseudogene Approved Xq23 Xq23 2010-01-18 2015-02-04 100131281 ENSG00000234349 OTTHUMG00000022201 NG_016578 PGOHUM00000304800 +HGNC:4336 GLUD2 glutamate dehydrogenase 2 protein-coding gene gene with protein product Approved Xq24 Xq24 GLUDP1 glutamate dehydrogenase pseudogene 1 1986-01-01 2003-02-28 2003-02-24 2016-10-05 2747 ENSG00000182890 OTTHUMG00000022320 uc004eto.4 U08997 NM_012084 CCDS14603 P49448 "8207021|9109504" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GLUD2 GLUD2 300144 +HGNC:4341 GLUL glutamate-ammonia ligase protein-coding gene gene with protein product Approved 1q25.3 01q25.3 glutamine synthetase GLNS glutamate-ammonia ligase (glutamine synthase) 1988-11-30 2010-05-04 2016-10-05 2752 ENSG00000135821 OTTHUMG00000037407 uc001gpd.2 AL161952 NM_002065 CCDS1344 P15104 "1681907|2888076" MGI:95739 RGD:2710 GLUL 138290 168083 6.3.1.2 +HGNC:4342 GLULP1 glutamate-ammonia ligase pseudogene 1 pseudogene pseudogene Approved 5q33.1 05q33.1 GLULL1 "glutamate-ammonia ligase (glutamine synthase)-like 1|glutamate-ammonia ligase (glutamine synthetase)-like 1|glutamate-ammonia ligase (glutamine synthetase) pseudogene 1" 1996-09-24 2010-03-16 2016-06-27 2016-06-27 2753 NG_003030 8921392 PGOHUM00000235814 +HGNC:4343 GLULP2 glutamate-ammonia ligase pseudogene 2 pseudogene pseudogene Approved 11p15.4 11p15.4 GLULL2 "glutamate-ammonia ligase (glutamine synthase)-like 2|glutamate-ammonia ligase (glutamine synthetase)-like 2|glutamate-ammonia ligase (glutamine synthetase) pseudogene 2" 1996-09-24 2010-03-16 2016-06-27 2016-06-27 2754 NG_009859 8921392 PGOHUM00000242168 +HGNC:4344 GLULP3 glutamate-ammonia ligase pseudogene 3 pseudogene pseudogene Approved 11q24.1 11q24.1 GLULL3 "glutamate-ammonia ligase (glutamine synthase)-like 3|glutamate-ammonia ligase (glutamine synthetase)-like 3|glutamate-ammonia ligase (glutamine synthetase) pseudogene 3" 1996-09-24 2010-03-16 2016-06-27 2016-06-27 401708 ENSG00000254572 OTTHUMG00000166039 NG_007180 8921392 PGOHUM00000242513 +HGNC:4345 GLULP4 glutamate-ammonia ligase pseudogene 4 pseudogene pseudogene Approved 9p13.3 09p13.3 GLULP "glutamate-ammonia ligase (glutamine synthase) pseudogene|glutamate-ammonia ligase (glutamine synthetase) pseudogene|glutamate-ammonia ligase (glutamine synthetase) pseudogene 4" 1996-09-24 2010-03-16 2016-06-27 2016-06-27 392305 ENSG00000178723 OTTHUMG00000019842 NG_005208 8921392 PGOHUM00000236446 +HGNC:37989 GLULP5 glutamate-ammonia ligase pseudogene 5 pseudogene pseudogene Approved 12q24.21 12q24.21 glutamate-ammonia ligase (glutamine synthetase) pseudogene 5 2010-03-17 2016-06-27 2016-06-27 100421694 ENSG00000257915 OTTHUMG00000169479 NG_021735 PGOHUM00000239935 +HGNC:37990 GLULP6 glutamate-ammonia ligase pseudogene 6 pseudogene pseudogene Approved 2q32.3 02q32.3 glutamate-ammonia ligase (glutamine synthetase) pseudogene 6 2010-03-17 2016-06-27 2016-06-27 343981 ENSG00000215043 OTTHUMG00000154356 NG_021543 PGOHUM00000240465 +HGNC:4352 GLUR7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13734 GLYAT glycine-N-acyltransferase protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "GAT|ACGNAT" 2001-05-04 2015-09-11 10249 ENSG00000149124 OTTHUMG00000167429 uc001nnb.4 AF023466 NM_201648 "CCDS7970|CCDS7971" Q6IB77 MGI:2147502 RGD:1307163 GLYAT 607424 2.3.1.13 +HGNC:30519 GLYATL1 glycine-N-acyltransferase like 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "MGC15397|FLJ34646" glycine-N-acyltransferase-like 1 2005-09-11 2015-11-18 2015-11-18 92292 ENSG00000166840 OTTHUMG00000167221 uc001nnf.4 AK091965 NM_080661 "CCDS31556|CCDS55768" Q969I3 22475485 GLYATL1 614761 +HGNC:37866 GLYATL1P1 glycine-N-acyltransferase like 1 pseudogene 1 pseudogene pseudogene Approved 11q12.1 11q12.1 glycine-N-acyltransferase-like 1 pseudogene 1 2010-03-05 2015-11-18 2015-11-18 100129032 ENSG00000255189 OTTHUMG00000167275 NG_022951 PGOHUM00000290982 +HGNC:37863 GLYATL1P2 glycine-N-acyltransferase like 1 pseudogene 2 pseudogene pseudogene Approved 11q12.1 11q12.1 glycine-N-acyltransferase-like 1 pseudogene 2 2010-03-05 2015-11-18 2015-11-18 100129933 ENSG00000254717 OTTHUMG00000167220 XR_037279 PGOHUM00000242743 +HGNC:37865 GLYATL1P3 glycine-N-acyltransferase like 1 pseudogene 3 other unknown Approved 11q12.1 11q12.1 glycine-N-acyltransferase-like 1 pseudogene 3 2010-09-29 2015-11-18 2016-07-19 100287520 ENSG00000255151 OTTHUMG00000167278 uc284mza.1 NG_028990 PGOHUM00000290984 +HGNC:37864 GLYATL1P4 glycine-N-acyltransferase like 1 pseudogene 4 pseudogene pseudogene Approved 11q12.1 11q12.1 glycine-N-acyltransferase-like 1 pseudogene 4 2010-09-29 2015-11-18 2015-11-18 643637 ENSG00000254399 OTTHUMG00000167277 NG_028295 PGOHUM00000242745 +HGNC:24178 GLYATL2 glycine-N-acyltransferase like 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "BXMAS2-10|MGC24009" glycine-N-acyltransferase-like 2 2005-09-11 2015-11-18 2015-11-18 219970 ENSG00000156689 OTTHUMG00000167432 uc001nnd.6 AF426250 NM_145016 CCDS41649 Q8WU03 20305126 GLYATL2 614762 2.3.1.13 +HGNC:21349 GLYATL3 glycine-N-acyltransferase like 3 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 bA28H17.2 C6orf140 "chromosome 6 open reading frame 140|glycine-N-acyltransferase-like 3" 2003-11-26 2009-12-14 2015-11-18 2015-11-18 389396 ENSG00000203972 OTTHUMG00000014818 uc003ozi.4 NM_001010904 CCDS47440 Q5SZD4 20305126 MGI:3647683 RGD:1587643 GLYATL3 614763 +HGNC:4363 GLYB glycine B complementing phenotype phenotype only Approved 8q21.1-qter 08q21.1-qter 2001-06-22 2012-10-02 2757 138480 +HGNC:18023 GLYCAM1 glycosylation dependent cell adhesion molecule 1 (pseudogene) pseudogene pseudogene Approved 12q13.2 12q13.2 glycosylation dependent cell adhesion molecule 1 2006-01-23 2008-03-11 2013-09-26 644076 ENSG00000257780 OTTHUMG00000169935 AJ489589 NR_003039 Q8IVK1 12057858 MGI:95759 +HGNC:24247 GLYCTK glycerate kinase protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "HBEBP4|HBEBP2" 2008-01-22 2016-10-05 132158 ENSG00000168237 OTTHUMG00000158380 uc003ddo.4 NM_145262 "CCDS2852|CCDS46841" Q8IVS8 16753811 MGI:2444085 RGD:1591498 GLYCTK 610516 260595 2.7.1.31 +HGNC:41043 GLYCTK-AS1 GLYCTK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.1 03p21.1 GLYCTK antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874110 ENSG00000242797 OTTHUMG00000158379 uc062klb.1 NR_046719 +HGNC:24434 GLYR1 glyoxylate reductase 1 homolog protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "BM045|HIBDL|NP60|N-PAC" nuclear protein 60kDa glyoxylate reductase 1 homolog (Arabidopsis) PWWP domain containing 1147 2009-08-14 2016-03-21 2016-03-21 84656 ENSG00000140632 OTTHUMG00000129530 uc002cxx.5 AF244907 NM_032569 "CCDS10524|CCDS81945" Q49A26 16352664 MGI:1921272 RGD:1309459 GLYR1 610660 +HGNC:4365 GLYS1 glycosuria 1, renal phenotype phenotype only Approved 6p21.3 06p21.3 1993-01-26 2011-02-15 2759 6524599 +HGNC:4367 GM2A GM2 ganglioside activator protein-coding gene gene with protein product Approved 5q33.1 05q33.1 SAP-3 "cerebroside sulfate activator protein|sphingolipid activator protein 3" GM2 ganglioside activator protein 1986-01-01 2004-05-20 2014-11-19 2760 ENSG00000196743 OTTHUMG00000130124 uc003ltr.5 NM_000405 CCDS4313 P17900 "115863|1915857" MGI:95762 RGD:628651 GM2A Locus Database|http://www.hexdb.mcgill.ca GM2A 613109 122192 +HGNC:4368 GM2AP1 GM2 ganglioside activator pseudogene 1 pseudogene pseudogene Approved 3q24 03q24 GM2AP "GM2 ganglioside activator protein pseudogene|GM2 ganglioside activator pseudogene" 1992-03-03 2010-03-17 2010-03-17 2014-11-19 2761 ENSG00000241695 OTTHUMG00000159389 L01440 NG_001130 1427911 PGOHUM00000238224 +HGNC:38002 GM2AP2 GM2 ganglioside activator pseudogene 2 pseudogene pseudogene Approved 1q24.3 01q24.3 2010-03-17 2014-11-18 100287900 ENSG00000239428 OTTHUMG00000158542 NG_022818 PGOHUM00000245084 +HGNC:23843 GMCL1 germ cell-less, spermatogenesis associated 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "FLJ13057|BTBD13|GCL1|SPATA29" spermatogenesis associated 29 germ cell-less homolog 1 (Drosophila) BTB domain containing 861 2006-01-31 2012-08-20 2015-09-11 64395 ENSG00000087338 OTTHUMG00000129643 uc002sfu.4 AK023119 NM_178439 CCDS1895 Q96IK5 MGI:1345156 RGD:1359265 GMCL1 +HGNC:19717 GMCL1P1 germ cell-less, spermatogenesis associated 1 pseudogene 1 pseudogene pseudogene Approved 5q35.3 05q35.3 "GMCL2|GCL" GMCL1L "germ cell-less homolog 1 (Drosophila)-like|germ cell-less homolog 1 (Drosophila) pseudogene 1" 2006-01-31 2011-09-02 2012-08-20 2014-11-19 64396 ENSG00000244234 OTTHUMG00000130894 AK315701 NR_003281 Q8NEA9 PGOHUM00000235472 +HGNC:42863 GMCL1P2 germ cell-less, spermatogenesis associated 1 pseudogene 2 pseudogene pseudogene Approved 2q12.3 02q12.3 germ cell-less homolog 1 (Drosophila) pseudogene 2 2011-09-02 2012-08-20 2016-08-01 100420975 ENSG00000271070 OTTHUMG00000184264 NG_023717 PGOHUM00000298617 +HGNC:4369 GMDS GDP-mannose 4,6-dehydratase protein-coding gene gene with protein product Approved 6p25.3 06p25.3 "GMD|SDR3E1" short chain dehydrogenase/reductase family 3E, member 1 Short chain dehydrogenase/reductase superfamily 743 1998-05-07 2016-10-05 2762 ENSG00000112699 OTTHUMG00000016143 uc003mtq.4 AF042377 XR_001743349 "CCDS4474|CCDS58994" O60547 "9525924|19027726" MGI:1891112 RGD:1311008 GMDS 602884 4.2.1.47 +HGNC:48993 GMDS-AS1 GMDS antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 6p25.3-p25.2 06p25.3-p25.2 2013-07-25 2016-10-11 100508120 ENSG00000250903 OTTHUMG00000014120 NR_046229 +HGNC:4370 GMEB1 glucocorticoid modulatory element binding protein 1 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "P96PIF|PIF96" 1999-07-07 2016-10-05 10691 ENSG00000162419 OTTHUMG00000003647 uc001bra.4 AF099013 NM_006582 "CCDS327|CCDS328" Q9Y692 "10386584|10523663" MGI:2135604 RGD:1563208 GMEB1 604409 +HGNC:4371 GMEB2 glucocorticoid modulatory element binding protein 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "P79PIF|KIAA1269|PIF79" 2000-03-30 2014-11-18 26205 ENSG00000101216 OTTHUMG00000032988 uc002yfq.2 AF173867 NM_012384 CCDS13528 Q9UKD1 "10523663|11743720" MGI:2652836 RGD:620481 GMEB2 607451 +HGNC:4372 GMFA glia maturation factor alpha other unknown Approved reserved reserved 1992-10-15 2016-02-09 2016-02-09 2763 +HGNC:4373 GMFB glia maturation factor beta protein-coding gene gene with protein product Approved 14q22.2 14q22.2 GMF 1992-10-15 2016-02-09 2016-02-09 2764 ENSG00000197045 OTTHUMG00000140307 uc021rtf.2 M86492 NM_004124 CCDS9718 P60983 1712830 MGI:1927133 RGD:70910 GMFB 601713 +HGNC:38654 GMFBP1 glia maturation factor beta pseudogene 1 pseudogene pseudogene Approved 3q12.2 03q12.2 2010-07-06 2016-02-09 2016-02-09 100499251 ENSG00000243495 OTTHUMG00000159084 NG_023431 PGOHUM00000237696 +HGNC:4374 GMFG glia maturation factor gamma protein-coding gene gene with protein product Approved 19q13.2 19q13.2 1999-05-25 2016-02-09 2016-02-09 9535 ENSG00000130755 OTTHUMG00000182811 uc002okz.5 AB001993 NM_001301008 "CCDS12532|CCDS74364" O60234 "9545571|9653160|17127212" MGI:1927135 RGD:620506 GMFG 604104 +HGNC:24852 GMIP GEM interacting protein protein-coding gene gene with protein product Approved 19p13.11 19p13.11 ARHGAP46 Rho GTPase activating proteins 721 2004-07-29 2014-11-18 51291 ENSG00000089639 OTTHUMG00000182329 uc002nnd.5 AF132541 NM_016573 "CCDS12408|CCDS74318" Q9P107 "12093360|16086184" MGI:1926066 RGD:1565577 GMIP 609694 +HGNC:4375 GML glycosylphosphatidylinositol anchored molecule like protein-coding gene gene with protein product Approved 8q24.3 08q24.3 LY6DL "GPI anchored molecule like protein|glycosylphosphatidylinositol anchored molecule like protein" LY6/PLAUR domain containing 1226 1997-03-19 2012-11-02 2015-09-11 2765 ENSG00000104499 OTTHUMG00000164656 uc003yxg.3 D84290 NM_002066 CCDS6391 Q99445 "8934543|9169150" "MGI:1341831|MGI:3644767" RGD:1307850 GML 602370 +HGNC:40049 GMNC geminin coiled-coil domain containing protein-coding gene gene with protein product Approved 3q28 03q28 GEMC1 2011-08-19 2011-08-19 2015-08-25 647309 ENSG00000205835 OTTHUMG00000156195 uc011bsl.2 BC031680 NM_001146686 CCDS54697 A6NCL1 "20383140|20855966" MGI:2685452 RGD:1563170 GMNC 614448 +HGNC:17493 GMNN geminin, DNA replication inhibitor protein-coding gene gene with protein product Approved 6p22.3 06p22.3 Gem 2002-08-19 2016-10-05 51053 ENSG00000112312 OTTHUMG00000014363 uc003nem.4 AF067855 NM_015895 CCDS4560 O75496 9635433 MGI:1927344 RGD:1308137 GMNN 602842 451459 +HGNC:22923 GMPPA GDP-mannose pyrophosphorylase A protein-coding gene gene with protein product Approved 2q35 02q35 2005-01-10 2016-10-05 29926 ENSG00000144591 OTTHUMG00000058922 uc002vlr.4 AF135422 NM_013335 CCDS2441 Q96IJ6 MGI:1916330 RGD:1560644 GMPPA 615495 377682 +HGNC:22932 GMPPB GDP-mannose pyrophosphorylase B protein-coding gene gene with protein product Approved 3p21.31 03p21.31 KIAA1851 mannose-1-phosphate guanyltransferase beta 2005-01-10 2016-01-26 29925 ENSG00000173540 OTTHUMG00000158151 uc062jwy.1 AF135421 NM_013334 "CCDS2802|CCDS2803" Q9Y5P6 MGI:2660880 RGD:1560458 GMPPB 615320 361109 2.7.7.22 +HGNC:4376 GMPR guanosine monophosphate reductase protein-coding gene gene with protein product Approved 6p22.3 06p22.3 GMP reductase 1 1990-11-09 2016-10-05 2766 ENSG00000137198 OTTHUMG00000014302 uc003nbs.3 XM_011514508 CCDS4537 P36959 2194676 MGI:1913605 RGD:70980 GMPR 139265 1.7.1.7 +HGNC:4377 GMPR2 guanosine monophosphate reductase 2 protein-coding gene gene with protein product Approved 14q12 14q12 1999-07-19 2016-10-05 51292 ENSG00000100938 OTTHUMG00000171912 uc001wns.5 NM_016576 "CCDS41935|CCDS45087|CCDS61419|CCDS73624" Q9P2T1 MGI:1917903 RGD:628875 GMPR2 610781 +HGNC:4378 GMPS guanine monophosphate synthase protein-coding gene gene with protein product Approved 3q25.31 03q25.31 GMP synthase guanine monophosphate synthetase 1999-01-22 2015-09-01 2015-09-01 8833 ENSG00000163655 OTTHUMG00000158551 uc003faq.4 U10860 XM_011513263 CCDS46941 P49915 "8089153|9195163" MGI:2448526 RGD:1310063 GMPS 600358 6.3.5.2 +HGNC:39428 GMPSP1 guanine monophosphate synthase pseudogene 1 pseudogene pseudogene Approved 4p16.1 04p16.1 2010-12-14 2015-09-01 2015-09-01 728564 ENSG00000250471 OTTHUMG00000160021 NG_023314 PGOHUM00000245819 +HGNC:4379 GNA11 G protein subunit alpha 11 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "FBH|FBH2|FHH2" HHC2 "hypocalciuric hypercalcemia 2|guanine nucleotide binding protein (G protein), alpha 11 (Gq class)" 1992-07-20 2016-03-03 2016-03-03 2767 ENSG00000088256 OTTHUMG00000180631 uc010xhe.5 AF493900 NM_002067 CCDS12103 P29992 "1302014|23802516" MGI:95766 RGD:619749 GNA11 139313 360224 +HGNC:4380 GNA12 G protein subunit alpha 12 protein-coding gene gene with protein product Approved 7p22.3-p22.2 07p22.3-p22.2 gep guanine nucleotide binding protein (G protein) alpha 12 1993-07-26 2016-03-03 2016-10-11 2768 ENSG00000146535 OTTHUMG00000023064 uc003smu.5 L01694 NM_007353 "CCDS5335|CCDS64584|CCDS64583" Q03113 "8423800|16247467" MGI:95767 RGD:71018 GNA12 604394 +HGNC:4381 GNA13 G protein subunit alpha 13 protein-coding gene gene with protein product Approved 17q24.1 17q24.1 "G13|MGC46138" guanine nucleotide binding protein (G protein), alpha 13 1999-07-14 2016-03-03 2016-03-03 10672 ENSG00000120063 OTTHUMG00000179316 uc002jfc.4 L22075 NM_006572 "CCDS11661|CCDS62302" Q14344 7791744 MGI:95768 RGD:1310221 GNA13 604406 +HGNC:4382 GNA14 G protein subunit alpha 14 protein-coding gene gene with protein product Approved 9q21.2 09q21.2 guanine nucleotide binding protein (G protein), alpha 14 1999-06-10 2016-03-03 2016-10-05 9630 ENSG00000156049 OTTHUMG00000020058 uc004aku.4 AF105201 XM_017015341 CCDS6657 O95837 "10191087|17620339" MGI:95769 RGD:1308122 GNA14 604397 +HGNC:50451 GNA14-AS1 GNA14 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q21.2 09q21.2 2014-04-30 2014-04-30 101927422 ENSG00000231373 OTTHUMG00000020056 BI830360 NR_121184 +HGNC:4383 GNA15 G protein subunit alpha 15 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 GNA16 guanine nucleotide binding protein (G protein), alpha 15 (Gq class) 1992-12-04 2016-03-03 2016-03-03 2769 ENSG00000060558 OTTHUMG00000180637 uc002lxf.3 NM_002068 CCDS12104 P30679 1302014 MGI:95770 RGD:619751 GNA15 139314 +HGNC:4384 GNAI1 G protein subunit alpha i1 protein-coding gene gene with protein product Approved 7q21.11 07q21.11 Gi1 protein alpha subunit guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 1988-05-11 2016-03-03 2016-03-03 2770 ENSG00000127955 OTTHUMG00000023523 uc003uhb.2 AL049933 NM_002069 "CCDS5595|CCDS59061" P63096 3110783 MGI:95771 RGD:2713 GNAI1 139310 +HGNC:4385 GNAI2 G protein subunit alpha i2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 GIP GTP-binding regulatory protein Gi alpha-2 chain GNAI2B guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 1986-01-01 2016-03-03 2016-03-03 2771 ENSG00000114353 OTTHUMG00000156940 uc003cyq.3 X04828 NM_002070 "CCDS2813|CCDS54587|CCDS63642|CCDS63644" P04899 "3100330|1733849" MGI:95772 RGD:620243 GNAI2 139360 +HGNC:4386 GNAI2P1 G protein subunit alpha i2 pseudogene 1 pseudogene pseudogene Approved 12p13.1 12p13.1 "GNAI2A|GNAI2L" "guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2-like|guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 pseudogene 1" 1988-05-11 2010-08-27 2016-03-03 2016-03-03 2772 ENSG00000255749 OTTHUMG00000168655 NG_027930 1733849 139180 PGOHUM00000239685 +HGNC:45110 GNAI2P2 G protein subunit alpha i2 pseudogene 2 pseudogene pseudogene Approved 10q22.3 10q22.3 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 pseudogene 2 2013-02-15 2016-03-03 2016-03-03 401646 ENSG00000231957 OTTHUMG00000018597 NG_030117 PGOHUM00000238547 +HGNC:4387 GNAI3 G protein subunit alpha i3 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 87U6 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 2001-06-22 2016-03-03 2016-10-05 2773 ENSG00000065135 OTTHUMG00000189112 uc001dxz.4 M27543 NM_006496 CCDS802 P08754 3109953 MGI:95773 RGD:2714 GNAI3 139370 302920 +HGNC:4388 GNAL G protein subunit alpha L protein-coding gene gene with protein product Approved 18p11.21 18p11.21 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type 1992-07-20 2016-03-03 2016-10-05 2774 ENSG00000141404 OTTHUMG00000131660 uc010dkz.4 AF493893 "NM_182978|NM_002071" "CCDS11851|CCDS11852|CCDS58614" P38405 1302014 MGI:95774 RGD:2715 GNAL 139312 331747 +HGNC:4389 GNAO1 G protein subunit alpha o1 protein-coding gene gene with protein product Approved 16q13 16q13 G-ALPHA-o guanine nucleotide binding protein (G protein), alpha activating activity polypeptide O 1988-04-24 2016-03-03 2016-03-03 2775 ENSG00000087258 OTTHUMG00000133241 uc002eiu.5 NM_020988 "CCDS10756|CCDS10757" P09471 "1899283|11395521" MGI:95775 RGD:628732 GNAO1 139311 363440 +HGNC:4390 GNAQ G protein subunit alpha q protein-coding gene gene with protein product Approved 9q21.2 09q21.2 "G-ALPHA-q|GAQ" guanine nucleotide binding protein (G protein), q polypeptide 1992-12-15 2016-03-03 2016-10-05 2776 ENSG00000156052 OTTHUMG00000020059 uc004akw.5 NM_002072 CCDS6658 P50148 8825633 MGI:95776 RGD:620770 GNAQ 600998 353497 +HGNC:4391 GNAQP1 G protein subunit alpha q pseudogene 1 pseudogene pseudogene Approved 2q21.1 02q21.1 GNAQP "quanine nucleotide binding protein (G protein), q polypeptide pseudogene|guanine nucleotide binding protein (G protein), q polypeptide pseudogene|guanine nucleotide binding protein (G protein), q polypeptide pseudogene 1" 1996-06-18 2010-03-17 2016-03-03 2016-03-03 2777 ENSG00000214077 OTTHUMG00000153563 U40037 NG_000862 8825633 PGOHUM00000240327 +HGNC:4392 GNAS GNAS complex locus protein-coding gene gene with protein product Approved 20q13.32 20q13.32 "NESP55|NESP|GNASXL|GPSA|SCG6|SgVI" "secretogranin VI|G protein subunit alpha S" GNAS1 guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1 Granins 925 1990-06-29 2001-12-20 2001-12-19 2016-10-05 2778 ENSG00000087460 OTTHUMG00000033069 uc061ybx.1 M21142 NM_000516 "CCDS13471|CCDS13472|CCDS42892|CCDS46622|CCDS46623|CCDS46624|CCDS82633" "O95467|P63092|P84996|Q5JWF2" MGI:95777 RGD:2716 LOVD - Leiden Open Variation Database|http://www.LOVD.nl/GNAS GNAS 139320 122194 +HGNC:24872 GNAS-AS1 GNAS antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.32 20q13.32 "SANG|NESP-AS|NESPAS|GNAS1AS|NCRNA00075" "GNAS antisense|non-protein coding RNA 75" "GNASAS|GNAS-AS" "GNAS antisense RNA (non-protein coding)|GNAS antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2008-06-20 2010-11-25 2012-08-15 2016-10-12 149775 ENSG00000235590 OTTHUMG00000060481 uc002xzs.3 AJ251759 NR_002785 10749992 LRG_1051|http://www.lrg-sequence.org/LRG/LRG_1051 610540 nespas +HGNC:4393 GNAT1 G protein subunit alpha transducin 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 CSNBAD3 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1 1986-01-01 2016-03-03 2016-10-05 2779 ENSG00000114349 OTTHUMG00000156808 uc003cym.3 NM_000172 CCDS2812 P11488 MGI:95778 RGD:1304683 GNAT1 139330 122202 +HGNC:4394 GNAT2 G protein subunit alpha transducin 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 ACHM4 guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2 1986-01-01 2016-03-03 2016-03-03 2780 ENSG00000134183 OTTHUMG00000011639 uc001dya.4 BC000233 NM_005272 CCDS803 P19087 8406495 MGI:95779 RGD:1309514 Mutations of the Transducin Subunits|http://www.retina-international.org/files/sci-news/gntmut.htm GNAT2 139340 122204 +HGNC:22800 GNAT3 G protein subunit alpha transducin 3 protein-coding gene gene with protein product Approved 7q21.11 07q21.11 "gustducin|GDCA" guanine nucleotide binding protein, alpha transducing 3 2004-01-29 2016-03-03 2016-03-03 346562 ENSG00000214415 OTTHUMG00000155401 uc011kgu.3 XM_294370 CCDS47625 A8MTJ3 MGI:3588268 RGD:727817 GNAT3 139395 +HGNC:4395 GNAZ G protein subunit alpha z protein-coding gene gene with protein product Approved 22q11.22-q11.23 22q11.22-q11.23 guanine nucleotide binding protein (G protein), alpha z polypeptide 1989-03-07 2016-03-03 2016-10-11 2781 ENSG00000128266 OTTHUMG00000150611 uc002zwu.2 NM_002073 CCDS13804 P19086 2115889 MGI:95780 RGD:2717 GNAZ 139160 +HGNC:4396 GNB1 G protein subunit beta 1 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 transducin beta chain 1 guanine nucleotide binding protein (G protein), beta polypeptide 1 WD repeat domain containing 362 1986-01-01 2016-03-03 2016-07-27 2782 ENSG00000078369 OTTHUMG00000000940 uc031tmu.1 BC004186 NM_002074 "CCDS34|CCDS72685" P62873 MGI:95781 RGD:2718 GNB1 139380 +HGNC:4397 GNB1L G protein subunit beta 1 like protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "GY2|WDR14" guanine nucleotide binding protein (G protein), beta polypeptide 1-like WD repeat domain containing 362 2000-06-16 2016-03-03 2016-10-05 54584 ENSG00000185838 OTTHUMG00000150279 uc002zqf.2 AF238328 NM_053004 CCDS13768 Q9BYB4 11072084 MGI:1338057 RGD:1594165 GNB1L 610778 +HGNC:4398 GNB2 G protein subunit beta 2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "G protein, beta-2 subunit|guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 2|signal-transducing guanine nucleotide-binding regulatory protein beta subunit|transducin beta chain 2" guanine nucleotide binding protein (G protein), beta polypeptide 2 WD repeat domain containing 362 1988-05-20 2016-03-03 2016-03-03 2783 ENSG00000172354 OTTHUMG00000137419 uc003uwb.4 M16514 NM_005273 CCDS5703 P62879 9799793 MGI:95784 RGD:69319 GNB2 139390 +HGNC:4400 GNB3 G protein subunit beta 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 transducin beta chain 3 guanine nucleotide binding protein (G protein), beta polypeptide 3 WD repeat domain containing 362 1989-05-30 2016-03-03 2016-10-05 2784 ENSG00000111664 OTTHUMG00000168517 uc001qrd.3 NM_002075 "CCDS8564|CCDS73427" P16520 "11770079|16600389" MGI:95785 RGD:708344 GNB3 139130 +HGNC:20731 GNB4 G protein subunit beta 4 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 transducin beta chain 4 guanine nucleotide binding protein (G protein), beta polypeptide 4 WD repeat domain containing 362 2003-03-27 2016-03-03 2016-10-05 59345 ENSG00000114450 OTTHUMG00000157440 uc003fjv.5 AF300648 NM_021629 CCDS3230 Q9HAV0 "10644457|11842130" MGI:104581 RGD:1359321 GNB4 610863 356169 +HGNC:4401 GNB5 G protein subunit beta 5 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 GB5 guanine nucleotide binding protein (G protein), beta 5 WD repeat domain containing 362 1999-07-14 2016-03-03 2016-10-05 10681 ENSG00000069966 OTTHUMG00000131892 uc002abt.2 AF017656 XM_011521162 "CCDS10149|CCDS45261" O14775 9606987 MGI:101848 RGD:620759 GNB5 604447 +HGNC:23657 GNE glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding gene gene with protein product Approved 9p13.3 09p13.3 Uae1 bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase IBM2 UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase 2003-11-28 2003-12-01 2016-10-05 10020 ENSG00000159921 OTTHUMG00000019899 uc010mlh.5 AF051852 NM_005476 "CCDS6602|CCDS47965|CCDS55308|CCDS55309|CCDS55310" Q9Y223 "9305887|9305888" MGI:1354951 RGD:69239 GNE 603824 122207 "2.7.1.60|3.2.1.183|5.1.3.14" +HGNC:4404 GNG2 G protein subunit gamma 2 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 guanine nucleotide binding protein (G protein), gamma 2 2000-07-31 2016-03-03 2016-10-05 54331 ENSG00000186469 OTTHUMG00000171083 uc059bmt.1 AK001024 XM_011536846 CCDS32082 P59768 10833460 MGI:102705 RGD:69268 GNG2 606981 +HGNC:4405 GNG3 G protein subunit gamma 3 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "guanine nucleotide-binding protein gamma-3 subunit|NBP gamma-3" guanine nucleotide binding protein (G protein), gamma 3 1994-11-08 2016-03-03 2016-10-05 2785 ENSG00000162188 OTTHUMG00000167560 uc001nuv.5 AF075042 NM_012202 CCDS8032 P63215 10644457 MGI:102704 RGD:620805 GNG3 608941 +HGNC:4407 GNG4 G protein subunit gamma 4 protein-coding gene gene with protein product Approved 1q42.3 01q42.3 guanine nucleotide binding protein (G protein), gamma 4 1995-11-21 2016-03-03 2016-03-03 2786 ENSG00000168243 OTTHUMG00000040740 uc009xfz.4 BC022485 NM_004485 CCDS1607 P50150 7665596 MGI:102703 RGD:620806 GNG4 604388 +HGNC:4408 GNG5 G protein subunit gamma 5 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 guanine nucleotide binding protein (G protein), gamma 5 1994-11-08 2016-03-03 2016-10-05 2787 ENSG00000174021 OTTHUMG00000009858 uc001djw.5 AF038955 NM_005274 CCDS696 P63218 7606925 MGI:109164 RGD:620807 GNG5 600874 +HGNC:4409 GNG5P1 G protein subunit gamma 5 pseudogene 1 pseudogene pseudogene Approved 6q27 06q27 GNG5P "guanine nucleotide binding protein (G protein), gamma 5 pseudogene|guanine nucleotide binding protein (G protein), gamma 5 pseudogene 1" 1994-11-08 2009-11-25 2016-03-03 2016-03-03 2789 ENSG00000213536 OTTHUMG00000015996 NG_006561 1549114 PGOHUM00000243454 +HGNC:24826 GNG5P2 G protein subunit gamma 5 pseudogene 2 pseudogene pseudogene Approved Xq23 Xq23 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 2 2007-07-30 2016-03-03 2016-10-05 347687 ENSG00000133136 OTTHUMG00000022193 NG_002699 10819326 +HGNC:33552 GNG5P3 G protein subunit gamma 5 pseudogene 3 pseudogene pseudogene Approved 11q23.1 11q23.1 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 3 2007-08-02 2016-03-03 2016-03-03 100101932 ENSG00000254949 OTTHUMG00000166883 NG_006562 PGOHUM00000242891 +HGNC:33553 GNG5P4 G protein subunit gamma 5 pseudogene 4 pseudogene pseudogene Approved 2p13.1 02p13.1 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 4 2007-08-02 2016-03-03 2016-10-05 100101933 NG_006563 PGOHUM00000298473 +HGNC:33554 GNG5P5 G protein subunit gamma 5 pseudogene 5 pseudogene pseudogene Approved 13q14.2 13q14.2 guanine nucleotide binding protein (G protein), gamma 5 pseudogene 5 2007-08-02 2016-03-03 2016-03-03 100101935 ENSG00000234590 OTTHUMG00000016882 NG_006564 PGOHUM00000248587 +HGNC:4410 GNG7 G protein subunit gamma 7 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ00058 guanine nucleotide binding protein (G protein), gamma 7 1994-11-08 2016-03-03 2016-03-03 2788 ENSG00000176533 OTTHUMG00000180435 uc002lwd.3 AB010414 NM_052847 CCDS12091 O60262 9600093 MGI:95787 RGD:61860 GNG7 604430 +HGNC:19664 GNG8 G protein subunit gamma 8 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 guanine nucleotide binding protein (G protein), gamma 8 2002-11-11 2016-03-03 2016-03-03 94235 ENSG00000167414 OTTHUMG00000183430 uc010xyd.3 AF493875 XM_011527524 CCDS12687 Q9UK08 10819326 MGI:109163 RGD:620808 GNG8 +HGNC:4402 GNG10 G protein subunit gamma 10 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 guanine nucleotide binding protein (G protein), gamma 10 1995-11-21 2016-03-03 2016-03-03 2790 ENSG00000242616 OTTHUMG00000157193 uc004bfp.4 NM_001017998 CCDS35107 P50151 7665596 MGI:1336169 RGD:621514 GNG10 604389 +HGNC:49502 GNG10P1 G protein subunit gamma 10 pseudogene 1 pseudogene pseudogene Approved 10q26.2 10q26.2 guanine nucleotide binding protein (G protein), gamma 10 pseudogene 1 2013-12-20 2016-03-03 2016-03-03 100526656 ENSG00000234016 OTTHUMG00000019240 NG_027859 PGOHUM00000238650 +HGNC:4403 GNG11 G protein subunit gamma 11 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 GNGT11 "G protein gamma-11 subunit|guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-11 subunit" guanine nucleotide binding protein (G protein), gamma 11 1995-11-21 2016-03-03 2016-10-05 2791 ENSG00000127920 OTTHUMG00000023411 uc003und.4 NM_004126 CCDS5634 P61952 7665596 MGI:1913316 RGD:621515 GNG11 604390 +HGNC:19663 GNG12 G protein subunit gamma 12 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 guanine nucleotide binding protein (G protein), gamma 12 2002-11-11 2016-03-03 2016-10-05 55970 ENSG00000172380 OTTHUMG00000009545 uc001dea.3 AF119663 XM_017001809 CCDS30749 Q9UBI6 10819326 MGI:1336171 RGD:621516 GNG12 615405 +HGNC:43938 GNG12-AS1 GNG12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p31.3 01p31.3 GNG12 antisense RNA 1 (non-protein coding) 2012-05-10 2012-08-15 2013-07-23 100289178 ENSG00000232284 OTTHUMG00000009150 uc001deb.3 NR_040077 23871723 615406 +HGNC:14131 GNG13 G protein subunit gamma 13 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "h2-35|G(gamma)13" G gamma subunit, clone:h2-35 guanine nucleotide binding protein (G protein), gamma 13 2000-12-21 2016-03-03 2016-03-03 51764 ENSG00000127588 OTTHUMG00000047839 uc002ckh.4 AB030207 NM_016541 CCDS10427 Q9P2W3 10570481 MGI:1925616 RGD:1593806 GNG13 607298 +HGNC:4411 GNGT1 G protein subunit gamma transducin 1 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 GNG1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 1988-04-28 2016-03-03 2016-03-03 2792 ENSG00000127928 OTTHUMG00000022908 uc003unc.2 NM_021955 CCDS5633 P63211 8661128 MGI:109165 RGD:1595475 GNGT1 189970 +HGNC:4412 GNGT2 G protein subunit gamma transducin 2 protein-coding gene gene with protein product Approved 17q21 17q21 GNG9 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2 1988-04-28 2016-03-03 2016-03-03 2793 ENSG00000167083 OTTHUMG00000161308 uc021tzq.2 NM_031498 CCDS11545 O14610 9286705 MGI:893584 RGD:1591007 GNGT2 139391 +HGNC:4413 GNL1 G protein nucleolar 1 (putative) protein-coding gene gene with protein product Approved 6p21.33 06p21.33 HSR1 guanine nucleotide binding protein-like 1 1995-09-14 2016-03-03 2016-10-05 2794 ENSG00000204590 OTTHUMG00000031137 uc003nqh.4 XM_005249015 CCDS4680 P36915 "8180467|22244851" MGI:95764 RGD:1303051 GNL1 143024 +HGNC:29925 GNL2 G protein nucleolar 2 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "Ngp-1|HUMAUANTIG|Nog2|Nug2" nucleostemin-2 guanine nucleotide binding protein-like 2 (nucleolar) 2004-09-06 2016-03-03 2016-10-05 29889 ENSG00000134697 OTTHUMG00000004322 uc001cbk.4 L05425 NM_013285 CCDS421 Q13823 "8822211|24240281" MGI:2385207 RGD:1305006 GNL2 609365 +HGNC:50779 GNL2P1 G protein nucleolar 2 pseudogene 1 pseudogene pseudogene Approved 7p12.2 07p12.2 guanine nucleotide binding protein-like 2 (nucleolar) pseudogene 1 2014-06-18 2016-03-03 2016-03-03 100270790 ENSG00000223893 OTTHUMG00000155879 NG_009768 PGOHUM00000232686 +HGNC:29931 GNL3 G protein nucleolar 3 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "C77032|E2IG3|MGC800|NS" nucleostemin guanine nucleotide binding protein-like 3 (nucleolar) 2005-01-10 2016-03-03 2016-03-03 26354 ENSG00000163938 OTTHUMG00000158752 uc003dfd.4 AK027514 NM_014366 "CCDS2861|CCDS43100" Q9BVP2 "11085516|12464630" MGI:1353651 RGD:631354 GNL3 608011 +HGNC:25553 GNL3L G protein nucleolar 3 like protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "FLJ10613|GNL3B" G protein nucleolar 3B guanine nucleotide binding protein-like 3 (nucleolar)-like 2005-01-10 2016-03-03 2016-03-03 54552 ENSG00000130119 OTTHUMG00000021629 uc004dth.3 AK001475 NM_019067 CCDS14360 Q9NVN8 "16251348|19487455" MGI:2448557 RGD:1600217 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GNL3L GNL3L 300873 +HGNC:25733 GNL3LP1 G protein nucleolar 3 like pseudogene 1 pseudogene pseudogene Approved 5q12.1 05q12.1 FLJ12595 GNL3LP guanine nucleotide binding protein-like 3 (nucleolar)-like pseudogene 2008-12-19 2010-03-17 2016-03-03 2016-03-03 80060 ENSG00000215032 OTTHUMG00000153832 AK022657 NG_005649 PGOHUM00000235235 +HGNC:4414 GNLY granulysin protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "NKG5|LAG-2|D2S69E|TLA519" T-lymphocyte activation gene 519 LAG2 1999-11-22 2016-10-05 10578 ENSG00000115523 OTTHUMG00000130179 uc002sql.5 X54101 NM_006433 "CCDS1984|CCDS46354|CCDS77430" P22749 "2212946|2434598" GNLY 188855 +HGNC:4415 GNMT glycine N-methyltransferase protein-coding gene gene with protein product Approved 6p21.1 06p21.1 2000-01-21 2016-10-05 27232 ENSG00000124713 OTTHUMG00000014712 uc003otd.4 AF101475 NM_018960 CCDS4876 Q14749 "10843803|9495250" MGI:1202304 RGD:2719 GNMT 606628 289897 +HGNC:4416 GNPAT glyceronephosphate O-acyltransferase protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "DHAPAT|DAPAT|DAP-AT" "glycerone-phosphate O-acyltransferase|dihydroxyacetone phosphate acyltransferase" 1998-10-29 2016-10-05 8443 ENSG00000116906 OTTHUMG00000038024 uc001hup.5 AF043937 XM_005273313 CCDS1592 O15228 "9459311|9536089" MGI:1343460 RGD:620179 GNPAT 602744 122211 2.3.1.42 +HGNC:34031 GNPATP glyceronephosphate O-acyltransferase pseudogene pseudogene pseudogene Approved 16q21 16q21 2008-03-20 2008-11-19 100130060 ENSG00000259844 OTTHUMG00000173087 NG_007472 +HGNC:4417 GNPDA1 glucosamine-6-phosphate deaminase 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "GNPDA|HLN|GPI|KIAA0060" "glucosamine-6-phosphate deaminase|oscillin" GNPI glucosamine-6-phosphate isomerase 1999-09-09 2003-10-22 2003-10-17 2016-10-05 10007 ENSG00000113552 OTTHUMG00000129657 uc010jgh.4 AF048826 NM_005471 CCDS4272 P46926 "9714720|9438414" MGI:1347054 RGD:1585624 GNPDA1 601798 3.5.99.6 +HGNC:21526 GNPDA2 glucosamine-6-phosphate deaminase 2 protein-coding gene gene with protein product Approved 4p12 04p12 SB52 glucosamine-6-phosphate isomerase 2003-10-17 2016-10-05 132789 ENSG00000163281 OTTHUMG00000099415 uc003gwy.5 AF247786 NM_138335 "CCDS3469|CCDS59472|CCDS59473" Q8TDQ7 12965206 MGI:1915230 RGD:1305521 GNPDA2 613222 3.5.99.6 +HGNC:19980 GNPNAT1 glucosamine-phosphate N-acetyltransferase 1 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "Gpnat1|FLJ10607" GCN5 related N-acetyltransferases 1134 2002-12-13 2014-11-19 64841 ENSG00000100522 OTTHUMG00000152334 uc001xab.4 AK001469 XM_005268012 CCDS9712 Q96EK6 MGI:1858963 RGD:1563144 GNPNAT1 616510 2.3.1.4 +HGNC:29670 GNPTAB N-acetylglucosamine-1-phosphate transferase alpha and beta subunits protein-coding gene gene with protein product Approved 12q23.2 12q23.2 "KIAA1208|MGC4170" GNPTA N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits EF-hand domain containing 863 2005-09-11 2016-03-09 2016-10-05 79158 ENSG00000111670 OTTHUMG00000170444 uc001tit.4 AY687932 XM_011538731 CCDS9088 Q3T906 "10574462|16116615" MGI:3643902 GNPTAB 607840 122216 +HGNC:23026 GNPTG N-acetylglucosamine-1-phosphate transferase gamma subunit protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "CAB56184|c316G12.3" GlcNAc-phosphotransferase gamma-subunit "GNPTAG|C16orf27" "N-acetylglucosamine-1-phosphotransferase, gamma subunit|chromosome 16 open reading frame 27" MRH domain containing 1233 2004-02-16 2004-10-01 2016-03-10 2016-03-10 84572 ENSG00000090581 OTTHUMG00000047835 uc002clm.4 BC014592 NM_032520 CCDS10436 Q9UJJ9 10712439 MGI:2147006 RGD:1311614 GNPTG 607838 122221 +HGNC:4419 GNRH1 gonadotropin releasing hormone 1 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 progonadoliberin-1 "GRH|GNRH|LHRH" leuteinizing-releasing hormone Endogenous ligands 542 1993-12-15 2015-11-13 2016-10-05 2796 ENSG00000147437 OTTHUMG00000163852 uc064lhq.1 X01059 NM_001083111 CCDS43725 P01148 6090951 MGI:95789 RGD:2720 GNRH1 152760 159628 +HGNC:4420 GNRH2 gonadotropin releasing hormone 2 protein-coding gene gene with protein product Approved 20p13 20p13 progonadoliberin-2 gonadotropin-releasing hormone 2 Endogenous ligands 542 1998-01-20 2015-11-13 2016-07-28 2797 ENSG00000125787 OTTHUMG00000031723 uc002whr.2 AF036329 NM_001501 "CCDS13040|CCDS13041|CCDS13042" O43555 "9419371|12447356" GNRH2 602352 +HGNC:4421 GNRHR gonadotropin releasing hormone receptor protein-coding gene gene with protein product Approved 4q13.2 04q13.2 LHRHR GRHR gonadotropin-releasing hormone receptor Gonadotropin releasing hormone receptors 227 1994-01-15 2015-11-13 2016-10-05 2798 ENSG00000109163 OTTHUMG00000129302 uc003hdn.4 NM_000406 "CCDS3517|CCDS47064" P30968 8386108 MGI:95790 RGD:70513 GNRHR 138850 122226 objectId:256 +HGNC:16341 GNRHR2 gonadotropin releasing hormone receptor 2 (pseudogene) pseudogene pseudogene Approved 1q21.1 01q21.1 gonadotropin-releasing hormone (type 2) receptor 2 Gonadotropin releasing hormone receptors 227 2001-09-26 2016-01-06 2016-10-05 114814 ENSG00000211451 OTTHUMG00000013742 AF403014 NR_002328 Q96P88 11707068 GNRHR2 612875 objectId:257 +HGNC:39424 GNRHR2P1 GNRHR2 pseudogene 1 pseudogene pseudogene Approved 14q23.1 14q23.1 gonadotropin-releasing hormone (type 2) receptor 2 pseudogene 1 2010-12-08 2015-11-13 2015-11-13 404718 ENSG00000259169 OTTHUMG00000171185 NG_003256 "11707068|11013075" PGOHUM00000264432 +HGNC:4422 GNS glucosamine (N-acetyl)-6-sulfatase protein-coding gene gene with protein product Approved 12q14.3 12q14.3 "Sanfilippo disease IIID|N-acetylglucosamine-6-sulfatase" Sulfatases 410 1988-06-09 2008-08-01 2016-10-05 2799 ENSG00000135677 OTTHUMG00000168819 uc001ssg.5 NM_002076 CCDS8970 P15586 MGI:1922862 RGD:1305877 GNS 607664 122230 3.1.6.14 +HGNC:4424 GOLGA1 golgin A1 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "golgin-97|MGC33154" golgi autoantigen, golgin subfamily a, 1 1997-11-05 2010-02-12 2016-10-05 2800 ENSG00000136935 OTTHUMG00000020665 uc004bpc.4 U51587 NM_002077 CCDS6860 Q92805 9324025 MGI:1924149 RGD:1311305 GOLGA1 602502 +HGNC:4425 GOLGA2 golgin A2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "GM130|golgin-95" "Golgi matrix protein GM130|SY11 protein" golgi autoantigen, golgin subfamily a, 2 1997-11-05 2010-02-12 2016-10-05 2801 ENSG00000167110 OTTHUMG00000020732 uc011maw.2 L06147 NM_004486 CCDS6896 Q08379 8315394 MGI:2139395 RGD:620282 GOLGA2 602580 +HGNC:31052 GOLGA2P1 golgin A2 pseudogene 1 pseudogene pseudogene Approved 8q21.3 08q21.3 GOLGA2 pseudogene 1 2004-04-30 2010-02-12 2014-11-19 100418751 ENSG00000205333 OTTHUMG00000160480 NG_026050 PGOHUM00000260414 +HGNC:16479 GOLGA2P2Y golgin A2 pseudogene 2, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "GOLGA2LY1|GOLGA2P2" "golgi autoantigen, golgin subfamily a, 2-like, Y-linked|golgin A2 pseudogene 2" 2001-09-21 2010-06-28 2010-06-28 2015-07-30 84559 ENSG00000239533 OTTHUMG00000045074 AF332229 NR_001555 400035 PGOHUM00000263346 +HGNC:32426 GOLGA2P3Y golgin A2 pseudogene 3, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "GOLGA2LY2|GOLGA2P3" "golgi autoantigen, golgin subfamily a, 2-like, Y-linked 2|golgin A2 pseudogene 3" 2005-12-16 2010-06-28 2010-06-28 2016-10-05 401634 ENSG00000172297 OTTHUMG00000045281 NR_002195 PGOHUM00000263353 +HGNC:38600 GOLGA2P4 golgin A2 pseudogene 4 pseudogene pseudogene Approved 22q13.2 22q13.2 2010-06-28 2014-11-19 100873742 ENSG00000229608 OTTHUMG00000150747 NG_032207 PGOHUM00000246599 +HGNC:25315 GOLGA2P5 golgin A2 pseudogene 5 pseudogene pseudogene Approved 12q23.1 12q23.1 DKFZp434M0331 "GOLGA2L1|GOLGA2B" "golgi autoantigen, golgin subfamily a, 2-like 1|golgin A2-like 1|golgin A2 family, member B" 2006-01-27 2011-09-02 2011-09-02 2014-11-18 55592 ENSG00000238105 OTTHUMG00000167822 AL137720 NM_017600 Q9HBQ8 PGOHUM00000262873 +HGNC:44948 GOLGA2P6 golgin A2 pseudogene 6 pseudogene pseudogene Approved 10p11.23 10p11.23 2012-12-19 2014-11-19 729668 ENSG00000241621 OTTHUMG00000017890 NR_120609 PGOHUM00000258461 +HGNC:49516 GOLGA2P7 golgin A2 pseudogene 7 pseudogene pseudogene Approved 15q25.2 15q25.2 2014-01-03 2014-01-03 388152 ENSG00000225151 OTTHUMG00000133525 NR_027001 +HGNC:49922 GOLGA2P8 golgin A2 pseudogene 8 pseudogene pseudogene Approved 15q26.1 15q26.1 2014-03-21 2014-03-21 728477 ENSG00000214433 OTTHUMG00000163474 NG_023539 PGOHUM00000251229 +HGNC:49921 GOLGA2P9 golgin A2 pseudogene 9 pseudogene pseudogene Approved 19p12 19p12 2014-03-21 2014-03-21 440518 ENSG00000269332 OTTHUMG00000182981 NR_033899 PGOHUM00000263015 +HGNC:26229 GOLGA2P10 golgin A2 pseudogene 10 pseudogene pseudogene Approved 15q25.2 15q25.2 "FLJ22795|AgSK1" antigen SK1, colon cancer-associated 2014-07-23 2014-07-23 80154 ENSG00000255769 OTTHUMG00000170549 NR_026811 10746788 +HGNC:26788 GOLGA2P11 golgin A2 pseudogene 11 pseudogene pseudogene Approved 15q22.2 15q22.2 FLJ38723 2014-07-23 2014-07-23 255180 ENSG00000260062 OTTHUMG00000173103 NR_136885 PGOHUM00000262905 +HGNC:4426 GOLGA3 golgin A3 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "golgin-160|GCP170|MEA-2" "SY2/SY10 protein|Golgi complex-associated protein of 170 kD" golgi autoantigen, golgin subfamily a, 3 1997-11-05 2010-02-12 2010-02-12 2802 ENSG00000090615 OTTHUMG00000168023 uc001ukz.1 AF485338 NM_005895 "CCDS9281|CCDS53846" Q08378 "8315394|15829563" MGI:96958 RGD:1305262 GOLGA3 602581 +HGNC:4427 GOLGA4 golgin A4 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "GOLG|GCP2|p230|golgin-240" golgin 245 golgi autoantigen, golgin subfamily a, 4 1997-11-05 2010-02-12 2016-10-05 2803 ENSG00000144674 OTTHUMG00000130799 uc003cgv.4 U31906 NM_002078 "CCDS2666|CCDS54564" Q13439 8626529 MGI:1859646 RGD:1591925 GOLGA4 602509 +HGNC:18660 GOLGA4P1 golgin A4 pseudogene 1 pseudogene pseudogene Approved 14q32.33 14q32.33 GOLGA4 pseudogene 1 2003-03-25 2010-02-12 2010-02-12 192131 NG_001019 +HGNC:20727 GOLGA4P2 golgin A4 pseudogene 2 pseudogene pseudogene Approved 14q32.33 14q32.33 GOLGA4 pseudogene 2 2003-09-30 2010-02-12 2014-11-18 192132 NG_001019 +HGNC:43786 GOLGA4P3 golgin A4 pseudogene 3 pseudogene pseudogene Approved 14q32.33 14q32.33 2012-03-06 2012-03-06 192130 NG_001019 +HGNC:4428 GOLGA5 golgin A5 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "ret-II|golgin-84|rfg5|GOLIM5" golgi integral membrane protein 5 golgi autoantigen, golgin subfamily a, 5 1999-04-28 2010-02-12 2012-05-04 9950 ENSG00000066455 OTTHUMG00000171217 uc001yaz.3 AF085199 XM_011537420 CCDS9905 Q8TBA6 "2734021|9443391|15004235" MGI:1351475 RGD:1308163 GOLGA5 606918 122232 +HGNC:43925 GOLGA5P1 golgin A5 pseudogene 1 pseudogene pseudogene Approved 5p13.1 05p13.1 2012-05-04 2012-05-04 100418736 ENSG00000251215 OTTHUMG00000162072 NG_024586 PGOHUM00000235195 +HGNC:13567 GOLGA6A golgin A6 family member A protein-coding gene gene with protein product Approved 15q24.1 15q24.1 GLP GOLGA6 "golgi autoantigen, golgin subfamily a, member 6|golgi autoantigen, golgin subfamily a, 6|golgi autoantigen, golgin subfamily a, 6A|golgin A6 family, member A" 2002-08-30 2009-09-28 2015-11-18 2015-11-18 342096 ENSG00000159289 OTTHUMG00000173035 uc002axa.1 AF263742 XM_292357 CCDS32290 Q9NYA3 11161787 GOLGA6A 610288 +HGNC:32205 GOLGA6B golgin A6 family member B protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "golgi autoantigen, golgin subfamily a, 6B|golgin A6 family, member B" 2008-01-23 2015-11-18 2015-11-18 55889 ENSG00000215186 OTTHUMG00000133511 uc010uks.2 NM_018652 CCDS10245 A6NDN3 GOLGA6B +HGNC:32206 GOLGA6C golgin A6 family member C protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "golgi autoantigen, golgin subfamily a, 6C|golgin A6 family, member C" 2008-08-06 2015-11-18 2015-11-18 653641 ENSG00000167195 OTTHUMG00000172671 uc002azs.3 NM_001164404 CCDS58388 A6NDK9 GOLGA6C +HGNC:32204 GOLGA6D golgin A6 family member D protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "golgi autoantigen, golgin subfamily a, 6D|golgin A6 family, member D" 2008-08-06 2009-09-04 2015-11-18 2015-11-18 653643 ENSG00000140478 OTTHUMG00000172672 uc010uma.3 NM_001145224 CCDS45308 P0CG33 GOLGA6D +HGNC:37444 GOLGA6L1 golgin A6 family-like 1 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 golgi autoantigen, golgin subfamily a, 6-like 1 2009-09-28 2010-02-12 2015-09-10 283767 ENSG00000273976 OTTHUMG00000171928 uc032bvr.2 AK097517 NM_001001413 CCDS73699 Q8N7Z2 GOLGA6L1 +HGNC:26695 GOLGA6L2 golgin A6 family-like 2 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 "CT105|FLJ36144" cancer/testis antigen 105 golgi autoantigen, golgin subfamily a, 6-like 2 2009-09-28 2010-02-12 2015-09-10 283685 ENSG00000174450 OTTHUMG00000176417 uc059gss.1 AK093463 NM_182561 CCDS76728 Q8N9W4 GOLGA6L2 +HGNC:37441 GOLGA6L3 golgin A6 family-like 3 other unknown Approved 15q25.3 15q25.3 golgi autoantigen, golgin subfamily a, 6-like 3 2009-09-28 2010-02-12 2013-01-17 100133220 ENSG00000188388 OTTHUMG00000163478 AK301968 XM_002343391 A6NEY3 +HGNC:27256 GOLGA6L4 golgin A6 family-like 4 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 golgi autoantigen, golgin subfamily a, 6-like 4 2009-09-28 2010-02-12 2015-09-10 643707 ENSG00000184206 OTTHUMG00000163050 uc059mrg.1 BC101294 NM_001267536 CCDS73774 A6NEF3 12477932 +HGNC:30472 GOLGA6L5P golgin A6 family-like 5, pseudogene pseudogene pseudogene Approved 15q25.2 15q25.2 "FLJ35171|FLJ40113|GOLGA6L8" golgi autoantigen, golgin subfamily a, 6-like 8 GOLGA6L5 golgi autoantigen, golgin subfamily a, 6-like 5 (pseudogene) 2009-09-28 2013-11-05 2013-11-05 2013-11-05 374650 ENSG00000230373 OTTHUMG00000148659 AK097432 NR_003246 +HGNC:37225 GOLGA6L6 golgin A6 family-like 6 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 FLJ36131 golgi autoantigen, golgin subfamily a, 6-like 6 2009-09-28 2010-02-12 2015-09-10 727832 ENSG00000277322 OTTHUMG00000171663 uc059gpb.1 AK093450 NM_001145004 CCDS45184 A8MZA4 GOLGA6L6 +HGNC:37442 GOLGA6L7P golgin A6 family-like 7, pseudogene pseudogene pseudogene Approved 15q13.1 15q13.1 GOLGA6L7 golgi autoantigen, golgin subfamily a, 6-like 7 (pseudogene) 2009-09-28 2010-04-20 2011-04-15 2012-10-05 728310 ENSG00000261649 OTTHUMG00000176345 AK302238 XR_078490 PGOHUM00000262221 +HGNC:37229 GOLGA6L9 golgin A6 family-like 9 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 GOLGA6L20 "golgi autoantigen, golgin subfamily a, 6-like 9|golgin A6 family-like 20" 2009-09-28 2010-02-12 2015-09-10 440295 ENSG00000197978 OTTHUMG00000170547 uc032clr.2 BC041854 NM_198181 CCDS45326 A6NEM1 GOLGA6L9 +HGNC:37228 GOLGA6L10 golgin A6 family-like 10 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 GOLGA6L18 "golgi autoantigen, golgin subfamily a, 6-like 10|golgin A6 family-like 18" 2009-09-28 2010-02-12 2016-04-25 647042 ENSG00000278662 OTTHUMG00000172580 uc284nst.1 NM_001164465 CCDS45325 A6NI86 GOLGA6L10 +HGNC:23958 GOLGA6L11P golgin A6 family-like 11, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 GOLGA6L15P golgin A6 family-like 15, pseudogene 2010-02-12 2010-02-12 2010-02-12 2016-10-05 360024 ENSG00000223698 OTTHUMG00000045042 NG_002946 12815422 PGOHUM00000264416 +HGNC:23959 GOLGA6L12P golgin A6 family-like 12, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-02-12 2010-02-12 2014-11-19 360025 NG_002945 12815422 +HGNC:23960 GOLGA6L13P golgin A6 family-like 13, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-02-12 2010-02-12 2014-11-19 360026 NG_002944 12815422 +HGNC:23961 GOLGA6L14P golgin A6 family-like 14, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-02-12 2010-02-12 2014-11-19 360027 NG_002943 12815422 +HGNC:38117 GOLGA6L16P golgin A6 family-like 16, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-04-20 2013-05-20 100287845 ENSG00000197092 OTTHUMG00000045260 NG_021930 PGOHUM00000264414 +HGNC:49414 GOLGA6L17P golgin A6 family-like 17, pseudogene pseudogene pseudogene Approved 15q25.2 15q25.2 GOLGA6L21P golgin A6 family-like 21, pseudogene 2013-11-05 2014-11-18 642402 ENSG00000277741 OTTHUMG00000163391 NR_111962 PGOHUM00000264241 +HGNC:49416 GOLGA6L19 golgin A6 family-like 19 protein-coding gene gene with protein product Approved 15q25.2 alternate reference locus 15q25.2 alternate reference locus 2013-11-05 2015-02-04 101927601 XM_006725184 H0YKK7 +HGNC:50289 GOLGA6L22 golgin A6 family-like 22 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 2014-04-01 2015-09-10 440243 ENSG00000277865 OTTHUMG00000171883 NM_001271664 H0YM25 +HGNC:24876 GOLGA7 golgin A7 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "GCP16|HSPC041|GOLGA3AP1|GOLGA7A" golgi autoantigen, golgin subfamily a, 7 2004-01-23 2010-02-12 2015-09-11 51125 ENSG00000147533 OTTHUMG00000164077 uc003xnu.4 AF125102 NM_016099 "CCDS34887|CCDS55226" Q7Z5G4 11042152 MGI:1931029 RGD:1359725 GOLGA7 609453 +HGNC:31668 GOLGA7B golgin A7 family member B protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "bA459F3.4|bA451M19.3" "C10orf133|C10orf132" "chromosome 10 open reading frame 133|chromosome 10 open reading frame 132|golgi autoantigen, golgin subfamily a, 7B|golgin A7 family, member B" 2004-05-27 2008-10-03 2015-11-18 2015-11-18 401647 ENSG00000155265 OTTHUMG00000018869 uc001kos.4 BC008047 NM_001010917 CCDS31265 Q2TAP0 MGI:1918396 RGD:1583839 GOLGA7B 614189 +HGNC:31972 GOLGA8A golgin A8 family member A protein-coding gene gene with protein product Approved 15q14 15q14 "GM88|GOLGIN-67" "golgi autoantigen, golgin subfamily a, 8A|golgin A8 family, member A" 2005-08-26 2015-11-18 2015-11-18 23015 ENSG00000175265 OTTHUMG00000129447 uc001zii.4 BX648160 NM_181076 CCDS10038 A7E2F4 "10660574|10677249" GOLGA8A 616180 +HGNC:31973 GOLGA8B golgin A8 family member B protein-coding gene gene with protein product Approved 15q14 15q14 "golgi autoantigen, golgin subfamily a, 8B|golgin A8 family, member B" 2005-08-26 2015-11-18 2015-11-18 440270 ENSG00000215252 OTTHUMG00000129549 uc001ziq.4 AF164622 NM_001023567 CCDS45211 A8MQT2 GOLGA8B 609619 +HGNC:32375 GOLGA8CP golgin A8 family member C, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 GOLGA8C "golgi autoantigen, golgin subfamily a, 8C|golgin A8 family, member C|golgin A8 family, member C, pseudogene" 2005-11-07 2012-10-05 2015-11-18 2015-11-18 729786 ENSG00000181984 OTTHUMG00000171665 NR_027411 A6NN73 12477932 PGOHUM00000261868 +HGNC:32376 GOLGA8DP golgin A8 family member D, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 GOLGA8D "golgi autoantigen, golgin subfamily a, 8D|golgin A8 family, member D, pseudogene" 2005-11-07 2010-02-12 2015-11-18 2015-11-18 100132979 ENSG00000185182 OTTHUMG00000171882 NR_027407 Q0D2H9 12477932 PGOHUM00000262213 +HGNC:32377 GOLGA8EP golgin A8 family member E, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 GOLGA8E "golgi autoantigen, golgin subfamily a, 8E|golgin A8 family, member E|golgin A8 family, member E, pseudogene" 2005-11-07 2012-10-05 2015-11-18 2015-11-18 390535 ENSG00000175676 OTTHUMG00000167132 NR_033350.1 12477932 PGOHUM00000264229 +HGNC:32378 GOLGA8F golgin A8 family member F other unknown Approved 15q13.1 15q13.1 DKFZp434P162 "golgi autoantigen, golgin subfamily a, 8F|golgin A8 family, member F" 2005-11-07 2015-11-18 2015-11-18 100132565 ENSG00000153684 OTTHUMG00000167129 uc059gza.1 NR_033351.1 Q08AF8 12477932 GOLGA8F +HGNC:25328 GOLGA8G golgin A8 family member G other unknown Approved 15q13.1 15q13.1 DKFZp434K052 "golgi autoantigen, golgin subfamily a, 8G|golgin A8 family, member G" 2005-11-07 2015-11-18 2015-11-18 283768 ENSG00000183629 OTTHUMG00000167134 uc059gzh.1 NR_033353.1 Q08AF8 12477932 GOLGA8G +HGNC:37443 GOLGA8H golgin A8 family member H protein-coding gene gene with protein product Approved 15q13.2 15q13.2 GOLGA6L11 golgi autoantigen, golgin subfamily a, 6-like 11 golgin A8 family, member H 2010-07-02 2015-11-18 2015-11-18 728498 ENSG00000261794 OTTHUMG00000175654 uc032byf.2 XM_001724395 CCDS61576 P0CJ92 GOLGA8H +HGNC:26660 GOLGA8IP golgin A8 family member I, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 FLJ35785 "GOLGA9P|GOLGA8I" "golgi autoantigen, golgin subfamily a, 9 pseudogene|golgin A9, pseudogene|golgin A8 family, member I|golgin A8 family, member I, pseudogene" 2008-01-23 2014-10-06 2015-11-18 2015-11-18 283796 ENSG00000277561 OTTHUMG00000188601 AK093104 NR_024074 A6NC78 GOLGA8IP +HGNC:38650 GOLGA8J golgin A8 family member J protein-coding gene gene with protein product Approved 15q13.2 15q13.2 golgin A8 family, member J 2010-07-02 2015-11-18 2015-11-18 653073 ENSG00000179938 OTTHUMG00000175635 uc021sgy.3 XM_001724382 CCDS61574 A6NMD2 GOLGA8J +HGNC:38652 GOLGA8K golgin A8 family member K protein-coding gene gene with protein product Approved 15q13.3 15q13.3 golgin A8 family, member K 2012-10-05 2015-11-18 2015-11-18 653125 ENSG00000249931 OTTHUMG00000175395 uc032byu.2 XM_003118652.2 CCDS61577 D6RF30 +HGNC:44404 GOLGA8M golgin A8 family member M protein-coding gene gene with protein product Approved 15q13.1 15q13.1 golgin A8 family, member M 2012-10-05 2015-11-18 2015-11-18 653720 ENSG00000188626 OTTHUMG00000176338 uc021sgq.3 XM_005268284 CCDS61572 H3BSY2 +HGNC:44405 GOLGA8N golgin A8 family member N protein-coding gene gene with protein product Approved 15q13.3 15q13.3 golgin A8 family, member N 2012-10-05 2015-11-18 2015-11-18 643699 ENSG00000232653 OTTHUMG00000175401 uc021sin.2 NM_001282494 F8WBI6 GOLGA8N +HGNC:44406 GOLGA8O golgin A8 family member O protein-coding gene gene with protein product Approved 15q13.3 15q13.3 golgin A8 family, member O 2012-10-05 2015-11-18 2015-11-18 728047 ENSG00000206127 OTTHUMG00000162878 uc031qrg.2 XM_011521988 CCDS59252 A6NCC3 GOLGA8O +HGNC:44408 GOLGA8Q golgin A8 family member Q other unknown Approved 15q13.2 15q13.2 golgin A8 family, member Q 2012-10-05 2015-11-18 2015-11-18 727909 ENSG00000178115 OTTHUMG00000175651 uc059hbl.1 NG_029301 GOLGA8Q +HGNC:44407 GOLGA8R golgin A8 family member R protein-coding gene gene with protein product Approved 15q13.2 15q13.2 golgin A8 family, member R 2012-10-05 2015-11-18 2015-11-18 101059918 ENSG00000186399 OTTHUMG00000175646 uc021shi.3 NM_001282484 "CCDS61578|CCDS61575" I6L899 GOLGA8R +HGNC:44409 GOLGA8S golgin A8 family member S other unknown Approved 15q11.2 15q11.2 golgin A8 family, member S 2012-10-05 2015-11-18 2015-11-18 653061 ENSG00000261739 OTTHUMG00000176415 uc059gsm.1 NR_038843 +HGNC:44410 GOLGA8T golgin A8 family member T other unknown Approved 15q13.2 15q13.2 golgin A8 family, member T 2012-10-05 2015-11-18 2015-11-18 653075 ENSG00000261247 OTTHUMG00000175638 uc059hav.1 NR_033933 +HGNC:44411 GOLGA8UP golgin A8 family member U, pseudogene pseudogene pseudogene Approved 15q13.2 15q13.2 golgin A8 family, member U, pseudogene 2012-10-05 2015-11-18 2015-11-18 100507067 ENSG00000103832 OTTHUMG00000165688 PGOHUM00000257990 +HGNC:49920 GOLGA8VP golgin A8 family member V, pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 golgin A8 family, member V, pseudogene 2014-03-21 2015-11-18 2015-11-18 441736 ENSG00000259236 OTTHUMG00000172266 NG_032743 PGOHUM00000261182 +HGNC:4429 GOLGB1 golgin B1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "GCP|GCP372|giantin|GOLIM1" "macrogolgin|golgi integral membrane protein 1" "golgi autoantigen, golgin subfamily b, macrogolgin (with transmembrane signal), 1|golgin B1, golgi integral membrane protein" 1997-11-05 2007-07-27 2010-02-12 2016-10-05 2804 ENSG00000173230 OTTHUMG00000159411 uc021xcy.3 X75304 NM_004487 "CCDS3004|CCDS58847|CCDS74989" Q14789 "7691276|15004235" MGI:1099447 RGD:708429 GOLGB1 602500 +HGNC:15448 GOLIM4 golgi integral membrane protein 4 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 "GPP130|GIMPC|P138" GOLPH4 golgi phosphoprotein 4 2001-04-27 2007-07-30 2007-07-30 2016-10-05 27333 ENSG00000173905 OTTHUMG00000158554 uc003ffe.3 U55853 XM_005247364 "CCDS3204|CCDS77854" O00461 "9201717|15004235" MGI:1920374 RGD:1310948 GOLIM4 606805 +HGNC:15451 GOLM1 golgi membrane protein 1 protein-coding gene gene with protein product Approved 9q21.33 09q21.33 "GP73|FLJ23608|bA379P1.3" "GOLPH2|C9orf155" "golgi phosphoprotein 2|chromosome 9 open reading frame 155" 2001-04-27 2007-07-30 2007-07-30 2015-08-25 51280 ENSG00000135052 OTTHUMG00000020130 uc004aom.4 AF236056 NM_177937 CCDS35054 Q8NBJ4 "10831838|18953438|22542941" MGI:1917329 RGD:1589384 GOLM1 606804 +HGNC:15452 GOLPH3 golgi phosphoprotein 3 protein-coding gene gene with protein product Approved 5p13.3 05p13.3 "GPP34|GOPP1|MIDAS|Vps74" "golgi peripheral membrane protein 1, 34 kDa|golgi protein|coat-protein|golgi-associated protein" golgi phosphoprotein 3 (coat-protein) 2001-04-27 2016-01-21 2016-10-05 64083 ENSG00000113384 OTTHUMG00000090679 uc003jhp.2 AK075156 NM_022130 CCDS3896 Q9H4A6 "11042173|16263763" MGI:1913879 RGD:621226 GOLPH3 612207 +HGNC:24882 GOLPH3L golgi phosphoprotein 3 like protein-coding gene gene with protein product Approved 1q21.3 01q21.3 GPP34R golgi phosphoprotein 3-like 2004-11-16 2016-01-21 2016-10-05 55204 ENSG00000143457 OTTHUMG00000035009 uc001evj.3 AJ296153 NM_018178 CCDS966 Q9H4A5 MGI:1917129 RGD:1359281 GOLPH3L 612208 +HGNC:24766 GOLT1A golgi transport 1A protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "FLJ42654|CGI-141|YMR292W|GOT1|MGC62027" golgi transport 1 homolog A (S. cerevisiae) 2005-02-07 2010-06-24 2015-09-11 127845 ENSG00000174567 OTTHUMG00000036056 uc001has.1 BC058832 NM_198447 CCDS1443 Q6ZVE7 12477932 MGI:1915588 RGD:1566310 GOLT1A +HGNC:20175 GOLT1B golgi transport 1B protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "CGI-141|YMR292W|GOT1" golgi transport 1 homolog B (S. cerevisiae) 2005-02-07 2010-06-24 2016-10-05 51026 ENSG00000111711 OTTHUMG00000169133 uc001rez.3 AB097020 NM_016072 CCDS8689 Q9Y3E0 "12414650|10810093" MGI:1914214 RGD:1310691 GOLT1B 615078 +HGNC:25973 GON4L gon-4 like protein-coding gene gene with protein product Approved 1q22 01q22 "FLJ20203|GON-4|YARP" YY1AP related protein GON4 "gon-4 homolog (C.elegans)|gon-4-like (C. elegans)" Myb/SANT domain containing 532 2005-08-22 2006-02-16 2016-03-07 2016-03-07 54856 ENSG00000116580 OTTHUMG00000014106 uc057lsu.1 AB046826 NM_032292 "CCDS1121|CCDS44242|CCDS60296" Q3T8J9 "16545939|21454521" MGI:1917579 RGD:1564691 GON4L 610393 +HGNC:20356 GON7 GON7, KEOPS complex subunit homolog protein-coding gene gene with protein product Approved 14q32.12 14q32.12 C14orf142 chromosome 14 open reading frame 142 2003-01-28 2016-07-08 2016-07-11 2016-07-11 84520 ENSG00000170270 OTTHUMG00000171267 uc001ybl.2 AF277185 NM_032490 CCDS41981 Q9BXV9 22912744 MGI:4845848 RGD:2302582 +HGNC:17643 GOPC golgi associated PDZ and coiled-coil motif containing protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "dJ94G16.2|PIST|FIG|GOPC1|CAL" PDZ domain containing 1220 2003-08-29 2016-06-01 2016-10-05 57120 ENSG00000047932 OTTHUMG00000015457 uc003pxv.4 AF287894 NM_020399 "CCDS5117|CCDS34523" Q9HD26 "11162552|11520064" MGI:2149946 RGD:1309512 GOPC 606845 +HGNC:25676 GORAB golgin, RAB6 interacting protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "FLJ11752|NTKL-BP1|GO" "gerodermia osteodysplastica|RAB6-interacting golgin" SCYL1BP1 "SCY1-like 1 binding protein 1|golgin, RAB6-interacting" 2005-05-19 2009-02-13 2016-04-06 2016-04-06 92344 ENSG00000120370 OTTHUMG00000035228 uc001gha.3 AK021814 NM_152281 "CCDS1289|CCDS53428" Q5T7V8 "12783284|15781263|18997784" MGI:2138271 RGD:1564990 GORAB 607983 169953 +HGNC:16769 GORASP1 golgi reassembly stacking protein 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "GRASP65|P65|FLJ23443" GOLPH5 "golgi phosphoprotein 5|golgi reassembly stacking protein 1, 65kDa" PDZ domain containing 1220 2001-11-02 2002-05-24 2015-11-09 2016-10-05 64689 ENSG00000114745 OTTHUMG00000131292 uc003ciw.3 AJ409349 NM_031899 "CCDS2681|CCDS63596|CCDS63597" Q9BQQ3 MGI:1921748 RGD:621122 GORASP1 606867 +HGNC:17500 GORASP2 golgi reassembly stacking protein 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "GRASP55|GRS2|GOLPH6" "golgi reassembly stacking protein 2, 55 kDa|golgi reassembly stacking protein 2, 55kDa" PDZ domain containing 1220 2002-05-23 2015-11-09 2015-11-09 26003 ENSG00000115806 OTTHUMG00000154072 uc002ugk.4 NM_015530 CCDS33325 Q9H8Y8 10487747 MGI:2135962 RGD:9411173 GORASP2 608693 +HGNC:4430 GOSR1 golgi SNAP receptor complex member 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "GOS28|P28|GS28|GOS-28|GOLIM2" golgi integral membrane protein 2 SNAREs 1124 1999-04-23 2016-10-05 9527 ENSG00000108587 OTTHUMG00000132796 uc002hfe.4 AF047438 XM_005258070 "CCDS11258|CCDS45643|CCDS45644" O95249 "8638159|9653160|15004235" MGI:1858260 RGD:71093 GOSR1 604026 +HGNC:4431 GOSR2 golgi SNAP receptor complex member 2 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "GS27|Bos1" SNAREs 1124 1999-04-23 2016-10-06 9570 ENSG00000108433 OTTHUMG00000178080 uc002ila.4 AF007548 NM_004287 "CCDS11507|CCDS42355|CCDS45719|CCDS82148" O14653 "9349823|10198168" MGI:1927204 RGD:62079 GOSR2 604027 280623 +HGNC:4432 GOT1 glutamic-oxaloacetic transaminase 1 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 AST1 "aspartate aminotransferase 1|aspartate transaminase 1|glutamate oxaloacetate transaminase 1" "glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)|glutamic-oxaloacetic transaminase 1, soluble" 2001-06-22 2016-04-05 2016-10-05 2805 ENSG00000120053 OTTHUMG00000018882 uc001kpr.4 M37400 NM_002079 CCDS7479 P17174 1974457 MGI:95791 RGD:2721 GOT1 138180 2.6.1.1 +HGNC:28487 GOT1L1 glutamic-oxaloacetic transaminase 1-like 1 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 MGC33309 2005-09-22 2016-10-05 137362 ENSG00000169154 OTTHUMG00000164027 uc011lbj.2 BC029504 NM_152413 CCDS47839 Q8NHS2 12477932 MGI:1923865 RGD:1307172 GOT1L1 +HGNC:4433 GOT2 glutamic-oxaloacetic transaminase 2 protein-coding gene gene with protein product Approved 16q21 16q21 "mitAAT|KATIV|KAT4|KYAT4" "kynurenine aminotransferase IV|aspartate aminotransferase 2|aspartate transaminase 2" "glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)|glutamic-oxaloacetic transaminase 2, mitochondrial" 2001-06-22 2015-12-04 2016-04-26 2806 ENSG00000125166 OTTHUMG00000133769 uc002eof.2 NM_002080 "CCDS10801|CCDS67045" P00505 17442055 MGI:95792 RGD:2722 GOT2 138150 "2.6.1.1|2.6.1.7" +HGNC:4434 GOT2P1 glutamic-oxaloacetic transaminase 2 pseudogene 1 pseudogene pseudogene Approved 1p32.3 01p32.3 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2) (GOT2) pseudogene GOT2L1 "glutamic-oxaloacetic transaminase 2-like 1|glutamic-oxaloacetic transaminase 2-like 1 pseudogene" 1990-09-10 2010-05-04 2010-05-04 2014-11-19 645538 ENSG00000231900 OTTHUMG00000008216 NG_008826 PGOHUM00000244732 +HGNC:4435 GOT2P2 glutamic-oxaloacetic transaminase 2 pseudogene 2 pseudogene pseudogene Approved 1q25.1 01q25.1 glutamic-oxaloacetic transaminase 2, mitochondrial (aspartate aminotransferase 2)(GOT2) pseudogene GOT2L2 "glutamic-oxaloacetic transaminase 2-like 2|glutamic-oxaloacetic transaminase 2-like 2 pseudogene" 1990-09-10 2010-05-04 2010-05-04 2014-11-19 391139 ENSG00000230849 OTTHUMG00000034837 NG_008831 PGOHUM00000244339 +HGNC:4436 GOT2P3 glutamic-oxaloacetic transaminase 2 pseudogene 3 pseudogene pseudogene Approved 12p13.31 12p13.31 "GOT2L3|GOT2L3P" "glutamic-oxaloacetic transaminase 2-like 3|glutamic-oxaloacetic transaminase 2-like 3 pseudogene" 2001-06-22 2010-05-04 2010-05-04 2014-11-19 644138 ENSG00000233719 NG_008820 PGOHUM00000239664 +HGNC:22936 GOT2P4 glutamic-oxaloacetic transaminase 2 pseudogene 4 pseudogene pseudogene Approved 12p12.3 12p12.3 GOT2L4 2010-05-04 2014-11-19 121520 NG_008829 PGOHUM00000239689 +HGNC:38439 GOT2P5 glutamic-oxaloacetic transaminase 2 pseudogene 5 pseudogene pseudogene Approved Yp11.2 Yp11.2 GOT2Y 2010-05-04 2014-11-18 100422625 ENSG00000233634 OTTHUMG00000035295 NG_021934 PGOHUM00000233902 +HGNC:4439 GP1BA glycoprotein Ib platelet alpha subunit protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "CD42b|GPIbalpha" platelet glycoprotein Ib alpha chain GP1B glycoprotein Ib (platelet), alpha polypeptide CD molecules 471 1990-09-10 2016-01-14 2016-10-12 2811 ENSG00000185245 OTTHUMG00000177946 uc021tnz.1 NM_000173 CCDS54068 P07359 3353370 MGI:1333744 RGD:1310239 LRG_480|http://www.lrg-sequence.org/LRG/LRG_480 GP1BA 606672 122237 CD42b +HGNC:4440 GP1BB glycoprotein Ib platelet beta subunit protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "CD42c|GPIbbeta" platelet glycoprotein Ib beta chain glycoprotein Ib (platelet), beta polypeptide CD molecules 471 1991-11-21 2016-01-14 2016-10-12 2812 ENSG00000203618 OTTHUMG00000150397 uc062bnf.1 NM_000407 CCDS42980 P13224 3422424 MGI:107852 RGD:621050 LRG_478|http://www.lrg-sequence.org/LRG/LRG_478 GP1BB 138720 122241 CD42c +HGNC:4441 GP2 glycoprotein 2 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 ZAP75 glycoprotein 2 (zymogen granule membrane) 1997-10-09 2016-01-14 2016-01-14 2813 ENSG00000169347 OTTHUMG00000131489 uc002dgw.4 U36221 NM_016295 "CCDS10582|CCDS42128|CCDS45432|CCDS45433" P55259 9605860 MGI:1914383 RGD:621695 GP2 602977 +HGNC:4443 GP5 glycoprotein V platelet protein-coding gene gene with protein product Approved 3q29 03q29 CD42d platelet glycoprotein V glycoprotein V (platelet) CD molecules 471 1993-11-03 2016-01-14 2016-01-14 2814 ENSG00000178732 OTTHUMG00000150345 uc062rou.1 L11238 NM_004488 CCDS3307 P40197 7690959 MGI:1096363 RGD:2724 GP5 173511 CD42d +HGNC:14388 GP6 glycoprotein VI platelet protein-coding gene gene with protein product Approved 19q13.42 19q13.42 GPVI platelet glycoprotein VI glycoprotein VI (platelet) Immunoglobulin like domain containing 594 2001-01-19 2016-01-14 2016-10-12 51206 ENSG00000088053 OTTHUMG00000159709 uc002qil.4 AB035073 NM_001083899 "CCDS42626|CCDS46184|CCDS58678" Q9HCN6 11027634 MGI:1889810 RGD:1589130 LRG_560|http://www.lrg-sequence.org/LRG/LRG_560 GP6 605546 225404 +HGNC:4444 GP9 glycoprotein IX platelet protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "CD42a|GPIX" platelet glycoprotein IX glycoprotein IX (platelet) CD molecules 471 1991-03-04 2016-01-14 2016-10-12 2815 ENSG00000169704 OTTHUMG00000159944 uc003elm.3 NM_000174 CCDS3055 P14770 2253772 MGI:1860137 RGD:1561601 LRG_477|http://www.lrg-sequence.org/LRG/LRG_477 GP9 173515 122244 CD42a +HGNC:4445 GPA33 glycoprotein A33 protein-coding gene gene with protein product Approved 1q24.1 01q24.1 A33 glycoprotein A33 (transmembrane) "V-set domain containing|Immunoglobulin like domain containing" "590|594" 2000-05-05 2016-01-14 2016-01-14 10223 ENSG00000143167 OTTHUMG00000034435 uc001gea.2 U79725 NM_005814 CCDS1258 Q99795 "9012807|9245713" MGI:1891703 RGD:1306711 GPA33 602171 +HGNC:4446 GPAA1 glycosylphosphatidylinositol anchor attachment 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "GAA1|hGAA1" GPI transamidase subunit "anchor attachment protein 1 (Gaa1p, yeast) homolog|GPAA1P anchor attachment protein 1 homolog (yeast)|glycosylphosphatidylinositol anchor attachment protein 1 homolog (yeast)" 1998-12-09 2012-12-10 2015-08-25 8733 ENSG00000197858 OTTHUMG00000165438 uc003zax.4 AB006969 NM_003801 CCDS43776 O43292 9828142 MGI:1202392 RGD:1303197 GPAA1 603048 +HGNC:4447 GPAA1P1 glycosylphosphatidylinositol anchor attachment 1 pseudogene 1 pseudogene pseudogene Approved 2q13 02q13 1999-02-23 2015-01-09 22945 ENSG00000240069 OTTHUMG00000153221 AB017268 NG_001245 10393431 PGOHUM00000298629 +HGNC:51484 GPAA1P2 glycosylphosphatidylinositol anchor attachment 1 pseudogene 2 pseudogene pseudogene Approved 2q13 02q13 2015-01-09 2015-01-09 2015-01-09 106481722 ENSG00000230596 OTTHUMG00000153194 NG_043395 PGOHUM00000298068 +HGNC:20298 GPALPP1 GPALPP motifs containing 1 protein-coding gene gene with protein product Approved 13q14.12 13q14.12 "bA245H20.2|AD029|LSR7" KIAA1704 KIAA1704 2004-04-16 2013-08-12 2013-08-12 2015-08-25 55425 ENSG00000133114 OTTHUMG00000016841 AB051491 NM_018559 CCDS9394 Q8IXQ4 11214970 MGI:1914717 RGD:1307254 +HGNC:24865 GPAM glycerol-3-phosphate acyltransferase, mitochondrial protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "KIAA1560|MGC26846|GPAT1" glycerol-3-phosphate acyltransferase 1, mitochondrial Glycerol-3-phosphate acyltransferases 1035 2004-04-30 2016-10-05 57678 ENSG00000119927 OTTHUMG00000019055 uc001kzp.4 AL832464 NM_020918 CCDS7570 Q9HCL2 "10997877|8369314" MGI:109162 RGD:61847 GPAM 602395 2.3.1.15 +HGNC:13920 GPANK1 G-patch domain and ankyrin repeats 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G5|D6S54E|GPATCH10|ANKRD59" "G patch domain containing 10|ankyrin repeat domain 59" BAT4 HLA-B associated transcript 4 "Ankyrin repeat domain containing|G-patch domain containing" "403|579" 2001-07-13 2010-11-24 2015-11-13 2016-10-05 7918 ENSG00000204438 OTTHUMG00000031174 uc003nvq.3 NM_033177 CCDS4711 O95872 "2911734|2813433" MGI:2148975 RGD:1303304 GPANK1 142610 +HGNC:27168 GPAT2 glycerol-3-phosphate acyltransferase 2, mitochondrial protein-coding gene gene with protein product Approved 2q11.2 02q11.2 CT123 cancer/testis antigen 123 Glycerol-3-phosphate acyltransferases 1035 2009-07-15 2015-08-03 150763 ENSG00000186281 OTTHUMG00000155208 uc061luj.1 BC042847 NM_207328 "CCDS42714|CCDS82482" Q6NUI2 12477932 MGI:2684962 RGD:1304904 GPAT2 616431 2.3.1.15 +HGNC:52330 GPAT2P1 glycerol-3-phosphate acyltransferase 2 pseuodgene 1 pseudogene pseudogene Approved 2q11.1 02q11.1 2016-07-22 2016-07-22 643219 ENSG00000237510 OTTHUMG00000155187 NG_021572 PGOHUM00000298572 +HGNC:52331 GPAT2P2 glycerol-3-phosphate acyltransferase 2 pseudogene 2 pseudogene pseudogene Approved 2q11.2 02q11.2 2016-07-22 2016-07-22 653924 ENSG00000188383 OTTHUMG00000155331 NG_023357 PGOHUM00000298579 +HGNC:28157 GPAT3 glycerol-3-phosphate acyltransferase 3 protein-coding gene gene with protein product Approved 4q21.23 04q21.23 "MGC11324|LPAAT-theta|MAG1|HMFN0839|AGPAT10" lysophosphatidic acid acyltransferase, theta AGPAT9 "1-acylglycerol-3-phosphate O-acyltransferase 9 (lysophosphatidic acid acyltransferase, theta)|1-acylglycerol-3-phosphate O-acyltransferase 9" "1-acylglycerol-3-phosphate O-acyltransferases|Glycerol-3-phosphate acyltransferases" "46|1035" 2008-01-29 2015-08-03 2015-08-03 2015-08-03 84803 ENSG00000138678 OTTHUMG00000130431 AK055749 NM_032717 CCDS3606 Q53EU6 "12975309|17170135" MGI:3603816 RGD:1565703 610958 2.3.1.15 +HGNC:20880 GPAT4 glycerol-3-phosphate acyltransferase 4 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "DKFZp586M1819|LPAAT-zeta|TSARG7" lysophosphatidic acid acyltransferase, zeta AGPAT6 "1-acylglycerol-3-phosphate O-acyltransferase 6 (lysophosphatidic acid acyltransferase, zeta)|1-acylglycerol-3-phosphate O-acyltransferase 6" "1-acylglycerol-3-phosphate O-acyltransferases|Glycerol-3-phosphate acyltransferases" "46|1035" 2005-07-18 2015-08-03 2015-08-03 2015-08-03 137964 ENSG00000158669 AF406612 NM_178819 CCDS6117 Q86UL3 "12938015|18238778" MGI:2142716 RGD:1310520 608143 2.3.1.15 +HGNC:24658 GPATCH1 G-patch domain containing 1 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "ECGP|FLJ10206|FLJ38686" evolutionarily conserved G patch domain containing GPATC1 G-patch domain containing 579 2004-05-12 2006-12-13 2015-11-13 2016-10-06 55094 ENSG00000076650 OTTHUMG00000180341 uc002nug.2 AF434677 NM_018025 CCDS12428 Q9BRR8 12477932 MGI:1914721 RGD:1308935 GPATCH1 +HGNC:25499 GPATCH2 G-patch domain containing 2 protein-coding gene gene with protein product Approved 1q41 01q41 "FLJ10252|CT110|PPP1R30" "cancer/testis antigen 110|protein phosphatase 1, regulatory subunit 30" GPATC2 "G-patch domain containing|Protein phosphatase 1 regulatory subunits" "579|694" 2004-05-12 2006-12-13 2015-11-13 2015-11-13 55105 ENSG00000092978 OTTHUMG00000000527 uc001hlf.2 AK001114 NM_018040 "CCDS1518|CCDS73031" Q9NW75 "19432882|15375528" MGI:1915019 RGD:1308865 GPATCH2 616836 +HGNC:20210 GPATCH2L G-patch domain containing 2 like protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "FLJ20689|FLJ10033" C14orf118 chromosome 14 open reading frame 118 2003-01-15 2012-09-25 2015-11-13 2015-11-13 55668 ENSG00000089916 OTTHUMG00000171490 uc032bgn.1 AK000696 NM_017926 "CCDS9848|CCDS9849" Q9NWQ4 10574461 MGI:1917623 RGD:1308907 GPATCH2L +HGNC:25720 GPATCH3 G-patch domain containing 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 FLJ12455 GPATC3 G-patch domain containing 579 2004-12-01 2006-12-13 2015-11-13 2016-10-05 63906 ENSG00000198746 OTTHUMG00000004229 uc001bne.4 BC007767 NM_022078 CCDS290 Q96I76 MGI:2442492 RGD:1311216 GPATCH3 +HGNC:25982 GPATCH4 G-patch domain containing 4 protein-coding gene gene with protein product Approved 1q22-q23.1 01q22-q23.1 "FLJ20249|DKFZP434F1735" GPATC4 G-patch domain containing 579 2004-12-01 2006-12-13 2015-11-13 2016-10-11 54865 ENSG00000160818 OTTHUMG00000033203 uc001fpl.4 BC056904 NM_017725 "CCDS1146|CCDS44245" Q5T3I0 12477932 MGI:1913864 RGD:1311086 GPATCH4 +HGNC:29066 GPATCH8 G-patch domain containing 8 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "KIAA0553|GPATC8" KIAA0553 G-patch domain containing 579 2005-12-15 2006-12-13 2015-11-13 2015-11-13 23131 ENSG00000186566 OTTHUMG00000181818 uc002igw.3 AB011125 NM_001002909 CCDS32666 Q9UKJ3 9628581 MGI:1918667 RGD:1596463 GPATCH8 614396 +HGNC:26768 GPATCH11 G-patch domain containing 11 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "FLJ38348|CENPY|CENP-Y" centromere protein Y CCDC75 coiled-coil domain containing 75 G-patch domain containing 579 2006-02-14 2013-01-28 2015-11-13 2016-04-25 253635 ENSG00000152133 OTTHUMG00000128469 uc010ezz.4 AK095667 NM_174931 "CCDS1785|CCDS62891" Q8N954 MGI:1858435 RGD:1311424 +HGNC:19680 GPBAR1 G protein-coupled bile acid receptor 1 protein-coding gene gene with protein product Approved 2q35 02q35 "BG37|GPCR|TGR5|M-BAR|GPCR19|GPR131|MGC40597" G protein-coupled bile acid receptor 933 2003-01-24 2014-11-19 151306 ENSG00000179921 OTTHUMG00000155203 uc061siw.1 AB086170 NM_001077191 CCDS46515 Q8TDU6 12419312 MGI:2653863 RGD:631400 GPBAR1 610147 objectId:37 +HGNC:29520 GPBP1 GC-rich promoter binding protein 1 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "DKFZp761C169|vasculin" 2005-07-19 2016-04-25 65056 ENSG00000062194 OTTHUMG00000162321 uc003jrh.5 NM_022913 "CCDS34162|CCDS47211|CCDS47212|CCDS56368|CCDS82998" Q86WP2 12842993 MGI:1920524 RGD:1305492 GPBP1 608412 +HGNC:28843 GPBP1L1 GC-rich promoter binding protein 1 like 1 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 SP192 GC-rich promoter binding protein 1-like 1 2005-07-19 2016-01-21 2016-01-21 60313 ENSG00000159592 OTTHUMG00000040990 uc001coq.4 NM_021639 CCDS528 Q9HC44 12477932 MGI:1924360 RGD:1359562 GPBP1L1 +HGNC:4448 GPB entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:4449 GPC1 glypican 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 glypican glypican proteoglycan 1 Glypicans 572 1994-06-17 2016-10-05 2817 ENSG00000063660 OTTHUMG00000133349 uc002vyw.5 AK095397 NM_002081 CCDS2534 P35052 7774946 MGI:1194891 RGD:61853 GPC1 600395 353445 +HGNC:4450 GPC2 glypican 2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "cerebroglycan|FLJ38962|DKFZp547M109" glypican proteoglycan 2, cerebroglycan proteoglycan glypican 2 (cerebroglycan) Glypicans 572 1994-06-17 2007-02-15 2014-11-18 221914 ENSG00000213420 OTTHUMG00000154894 uc003utv.3 BX375153 NM_152742 CCDS5689 Q8N158 8294498 MGI:1919201 RGD:621363 GPC2 +HGNC:4451 GPC3 glypican 3 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 "OCI-5|SGBS|SGBS1|SGB|DGSX" glypican proteoglycan 3 SDYS Glypicans 572 1996-08-08 2016-10-12 2719 ENSG00000147257 OTTHUMG00000022448 uc004exe.4 L47125 NM_004484 "CCDS14638|CCDS55496|CCDS55495" P51654 "8589713|9787072" MGI:104903 RGD:2725 LRG_505|http://www.lrg-sequence.org/LRG/LRG_505 GPC3 300037 122248 +HGNC:4452 GPC4 glypican 4 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 K-glypican glypican proteoglycan 4 Glypicans 572 1996-08-08 2016-10-05 2239 ENSG00000076716 OTTHUMG00000022434 uc004exc.2 AF030186 NM_001448 CCDS14637 O75487 9787072 MGI:104902 RGD:1359399 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPC4 GPC4 300168 167870 +HGNC:4453 GPC5 glypican 5 protein-coding gene gene with protein product Approved 13q31.3 13q31.3 glypican proteoglycan 5 Glypicans 572 1996-12-12 2016-10-05 2262 ENSG00000179399 OTTHUMG00000017200 uc010tif.4 AF001462 NM_004466 CCDS9468 P78333 "9070915|20304703|19556317|15057823" MGI:1194894 RGD:1308835 GPC5 602446 +HGNC:39886 GPC5-AS1 GPC5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 GPC5 antisense RNA 1 (non-protein coding) 2011-04-08 2012-08-15 2014-11-18 100873969 ENSG00000235984 OTTHUMG00000017199 uc031qmv.1 NR_046520 +HGNC:39887 GPC5-AS2 GPC5 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 GPC5 antisense RNA 2 (non-protein coding) 2011-04-08 2012-08-15 2014-11-19 100873970 ENSG00000232885 OTTHUMG00000017197 uc058xtd.1 NR_120382 +HGNC:41340 GPC5-IT1 GPC5 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 GPC5 intronic transcript 1 (non-protein coding) 2011-05-04 2015-02-25 2015-02-25 100874293 ENSG00000236240 OTTHUMG00000017198 uc058xte.1 +HGNC:4454 GPC6 glypican 6 protein-coding gene gene with protein product Approved 13q31.3-q32.1 13q31.3-q32.1 glypican proteoglycan 6 Glypicans 572 1999-05-24 2016-10-11 10082 ENSG00000183098 OTTHUMG00000017205 uc001vlt.4 AF111178 NM_005708 CCDS9469 Q9Y625 10329016 MGI:1346322 RGD:1593308 GPC6 604404 201551 +HGNC:39909 GPC6-AS1 GPC6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 GPC6 antisense RNA 1 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100873972 ENSG00000236520 OTTHUMG00000017204 uc032amh.1 NR_046535 +HGNC:39910 GPC6-AS2 GPC6 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 GPC6 antisense RNA 2 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100873973 ENSG00000224394 OTTHUMG00000017203 uc058xti.1 NR_046536 +HGNC:26957 GPCPD1 glycerophosphocholine phosphodiesterase 1 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "KIAA1434|GDE5|GDPD6" glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae) 2010-01-19 2015-06-24 2015-06-24 56261 ENSG00000125772 OTTHUMG00000031806 uc002wme.6 NM_019593 CCDS13090 Q9NPB8 "10718198|20576599" MGI:104898 RGD:735140 GPCPD1 614124 +HGNC:4455 GPD1 glycerol-3-phosphate dehydrogenase 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 glycerol-3-phosphate dehydrogenase 1 (soluble) 2001-06-22 2015-11-05 2015-11-05 2819 ENSG00000167588 OTTHUMG00000169813 uc001rvz.5 NM_005276 "CCDS8799|CCDS58229" P21695 MGI:95679 RGD:621381 GPD1 138420 303828 1.1.1.8 +HGNC:28956 GPD1L glycerol-3-phosphate dehydrogenase 1-like protein-coding gene gene with protein product Approved 3p22.3 03p22.3 KIAA0089 2004-07-29 2016-10-12 23171 ENSG00000152642 OTTHUMG00000155846 uc003cew.4 D42047 NM_015141 CCDS33729 Q8N335 7788527 MGI:1289257 RGD:1560123 LRG_419|http://www.lrg-sequence.org/LRG/LRG_419 GPD1L 611778 218672 +HGNC:4456 GPD2 glycerol-3-phosphate dehydrogenase 2 protein-coding gene gene with protein product Approved 2q24.1 02q24.1 glycerol-3-phosphate dehydrogenase 2 (mitochondrial) EF-hand domain containing 863 1994-06-16 2015-11-05 2015-11-05 2820 ENSG00000115159 OTTHUMG00000131951 uc002tzf.5 XM_011510977 CCDS2202 P43304 MGI:99778 RGD:2726 GPD2 138430 1.1.1.8 +HGNC:4457 GPDS1 glaucoma-related pigment dispersion syndrome 1 phenotype phenotype only Approved 7q35-q36 07q35-q36 1998-10-12 1998-10-12 7986 9076212 600510 +HGNC:4485 GPER1 G protein-coupled estrogen receptor 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "FEG-1|GPCR-Br|LERGU|LERGU2|DRY12|LyGPR|CEPR" "CMKRL2|GPR30|GPER" G protein-coupled receptor 30 G protein-coupled estrogen receptor 934 1997-06-12 2013-08-14 2007-07-03 2016-10-05 2852 ENSG00000164850 OTTHUMG00000023680 U63917 NM_001039966 CCDS5322 Q99527 "9479505|17655271" MGI:1924104 RGD:619845 601805 objectId:221 +HGNC:18054 GPHA2 glycoprotein hormone alpha 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "GPA2|ZSIG51|A2|MGC126572" "glycoprotein alpha 2|cysteine knot protein" 2002-02-15 2016-01-12 170589 ENSG00000149735 OTTHUMG00000165631 uc001oca.3 AF260739 NM_130769 CCDS8086 Q96T91 11809971 MGI:2156541 RGD:621748 GPHA2 609651 +HGNC:18055 GPHB5 glycoprotein hormone beta 5 protein-coding gene gene with protein product Approved 14q23.2 14q23.2 "ZLUT1|GPB5" 2004-07-29 2016-01-12 122876 ENSG00000179600 OTTHUMG00000168678 uc032bdx.1 AF467770 NM_145171 CCDS73643 Q86YW7 MGI:2156540 RGD:1359264 GPHB5 609652 +HGNC:15465 GPHN gephyrin protein-coding gene gene with protein product Approved 14q23.3 14q23.3 KIAA1385 2001-03-30 2014-11-19 10243 ENSG00000171723 OTTHUMG00000029785 uc001xix.4 AB037806 NM_020806 "CCDS9777|CCDS32103" Q9NQX3 "1319186|10325225|18403029" MGI:109602 RGD:69194 GPHN 603930 122256 +HGNC:4458 GPI glucose-6-phosphate isomerase protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "AMF|NLK" glucose phosphate isomerase 2001-06-22 2010-05-11 2016-10-06 2821 ENSG00000105220 OTTHUMG00000182087 uc002nvg.3 M61214 XM_011526754 "CCDS12437|CCDS54246" P06744 "2387591|8575767" MGI:95797 RGD:2727 GPI 172400 122259 5.3.1.9 +HGNC:24945 GPIHBP1 glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "LOC338328|GPI-HBP1" endothelial cell LPL transporter GPI anchored high density lipoprotein binding protein 1 LY6/PLAUR domain containing 1226 2008-02-07 2008-02-07 2014-11-19 338328 ENSG00000277494 OTTHUMG00000164950 uc033cbs.1 AF088057 NM_178172 CCDS34954 Q8IV16 "12496272|17883852|17620854|17403372" MGI:1915703 RGD:1564237 GPIHBP1 612757 201108 +HGNC:30677 GPKOW G-patch domain and KOW motifs protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "T54|GPATC5|GPATCH5|Spp2" G patch domain containing 5 G-patch domain containing 579 2004-05-11 2015-11-13 2015-11-13 27238 ENSG00000068394 OTTHUMG00000021511 uc004dmr.5 U66359 NM_015698 CCDS35251 Q92917 "21880142|22365833" MGI:1859610 RGD:1583600 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPKOW GPKOW +HGNC:4459 GPLD1 glycosylphosphatidylinositol specific phospholipase D1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 1998-08-21 2016-10-05 2822 ENSG00000112293 OTTHUMG00000016104 uc003ned.3 L11701 NM_001503 CCDS4553 P80108 11072085 MGI:106604 RGD:631371 GPLD1 602515 +HGNC:4460 GPM6A glycoprotein M6A protein-coding gene gene with protein product Approved 4q34.2 04q34.2 GPM6 1996-05-28 2016-10-06 2823 ENSG00000150625 OTTHUMG00000160760 uc003iug.5 XM_017008036 "CCDS3824|CCDS54822|CCDS58936" P51674 "8661015|18574501" MGI:107671 RGD:631368 GPM6A 601275 +HGNC:4461 GPM6B glycoprotein M6B protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "M6B|MGC17150|MGC54284" 1996-06-21 2014-11-19 2824 ENSG00000046653 OTTHUMG00000021162 uc004cwa.4 NM_001001995 "CCDS14158|CCDS35206|CCDS35207|CCDS48084" Q13491 8661015 MGI:107672 RGD:620580 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPM6B|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=GPM6B" GPM6B 300051 +HGNC:38782 GPM6BP1 glycoprotein M6B pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 106480720 ENSG00000230458 OTTHUMG00000041985 NG_045493 PGOHUM00000233994 +HGNC:38781 GPM6BP2 glycoprotein M6B pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-18 106480426 ENSG00000236429 OTTHUMG00000041949 NG_045377 PGOHUM00000233778 +HGNC:38783 GPM6BP3 glycoprotein M6B pseudogene 3 pseudogene pseudogene Approved 22q11.1 22q11.1 2010-08-03 2014-11-19 100873787 ENSG00000234121 OTTHUMG00000144175 NG_032217 PGOHUM00000246385 +HGNC:17030 GPN1 GPN-loop GTPase 1 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "NTPBP|MBDIN|ATPBD1A|RPAP4" RNA polymerase II associated protein 4 XAB1 "XPA binding protein 1|XPA binding protein 1, GTPase" GPN-loop GTPases 578 2003-10-14 2008-04-30 2008-04-30 2014-11-19 11321 ENSG00000198522 OTTHUMG00000097784 uc061hra.1 AB044661 NM_007266 "CCDS1760|CCDS46248|CCDS46249|CCDS46250" Q9HCN4 "11058119|11124703" MGI:1921504 RGD:1589985 GPN1 611479 +HGNC:25513 GPN2 GPN-loop GTPase 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 FLJ10349 ATPBD1B ATP binding domain 1 family, member B GPN-loop GTPases 578 2005-08-12 2008-04-30 2008-04-30 2015-08-25 54707 ENSG00000142751 OTTHUMG00000004227 uc001bnd.2 AK001211 NM_018066 CCDS289 Q9H9Y4 12975309 MGI:2140368 RGD:1311749 GPN2 +HGNC:30186 GPN3 GPN-loop GTPase 3 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 MGC14560 ATPBD1C ATP binding domain 1 family, member C GPN-loop GTPases 578 2005-08-12 2008-04-30 2008-04-30 2015-08-25 51184 ENSG00000111231 OTTHUMG00000169524 uc001tqr.4 BC008416 NM_016301 "CCDS9147|CCDS53830|CCDS53831" Q9UHW5 12975309 MGI:1289326 RGD:1303034 GPN3 +HGNC:44914 GPN3P1 GPN-loop GTPase 3 pseudogene 1 pseudogene pseudogene Approved 10p12.1 10p12.1 2012-12-18 2012-12-18 100302689 ENSG00000227465 OTTHUMG00000017834 NG_012769 PGOHUM00000238375 +HGNC:4462 GPNMB glycoprotein nmb protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "NMB|HGFIN" "transmembrane glycoprotein|glycoprotein NMB|glycoprotein nmb-like protein|osteoactivin|hematopoietic growth factor inducible neurokinin-1|glycoprotein nonmetastatic melanoma protein B" glycoprotein (transmembrane) nmb 1999-10-26 2016-02-03 2016-10-05 10457 ENSG00000136235 OTTHUMG00000022811 uc003swb.4 X76534 NM_001005340 "CCDS5380|CCDS34610" Q14956 7814155 MGI:1934765 RGD:71008 GPNMB 604368 +HGNC:4463 GPR1 G protein-coupled receptor 1 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 G protein-coupled receptors, Class A orphans 262 1994-07-25 2015-08-25 2825 ENSG00000183671 OTTHUMG00000132894 uc031rqw.3 NM_001098199 CCDS2368 P46091 7851889 MGI:2385324 RGD:2728 GPR1 600239 objectId:82 +HGNC:48602 GPR1-AS GPR1 antisense RNA non-coding RNA RNA, long non-coding Approved 2q33.3 02q33.3 GPR1AS G protein-coupled receptor 1 antisense RNA GPR1-AS1 GPR1 antisense RNA 1 Long non-coding RNAs 788 2013-05-24 2013-08-21 2013-08-21 2016-10-12 101669764 ENSG00000279220 OTTHUMG00000189431 AB774455 NR_104359 23764515 LRG_1105|http://www.lrg-sequence.org/LRG/LRG_1105 +HGNC:4484 GPR3 G protein-coupled receptor 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 ACCA G protein-coupled receptors, Class A orphans 262 1994-07-22 2016-10-05 2827 ENSG00000181773 OTTHUMG00000003397 uc001bod.5 BC032702 NM_005281 CCDS303 P46089 7851889 MGI:101908 RGD:628686 GPR3 600241 objectId:83 +HGNC:4497 GPR4 G protein-coupled receptor 4 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 G protein-coupled receptors, Class A orphans 262 1994-07-25 2016-10-06 2828 ENSG00000177464 OTTHUMG00000182126 uc002pcm.4 BC067536 NM_005282 CCDS12669 P46093 8595909 MGI:2441992 RGD:1311604 GPR4 600551 objectId:84 +HGNC:4515 GPR6 G protein-coupled receptor 6 protein-coding gene gene with protein product Approved 6q21 06q21 G protein-coupled receptors, Class A orphans 262 1994-07-25 2015-08-25 2830 ENSG00000146360 OTTHUMG00000015354 uc021zds.3 NM_001286099 "CCDS5079|CCDS69172" P46095 8530049 MGI:2155249 RGD:70939 GPR6 600553 objectId:85 +HGNC:4466 GPR12 G protein-coupled receptor 12 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 "GPCR21|PPP1R84" protein phosphatase 1, regulatory subunit 84 "G protein-coupled receptors, Class A orphans|Protein phosphatase 1 regulatory subunits" "262|694" 1995-01-24 2016-10-06 2835 ENSG00000132975 OTTHUMG00000016620 uc010aal.5 U18548 XM_005266360 CCDS9319 P47775 "8262253|8530049" MGI:101909 RGD:68333 GPR12 600752 objectId:86 +HGNC:4469 GPR15 G protein-coupled receptor 15 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 G protein-coupled receptors, Class A orphans 262 1995-08-10 2016-10-05 2838 ENSG00000154165 OTTHUMG00000160017 uc011bgy.3 NM_005290 CCDS2931 P49685 8838812 MGI:1918473 RGD:1306639 GPR15 601166 objectId:87 +HGNC:4471 GPR17 G protein-coupled receptor 17 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 G protein-coupled receptors, Class A orphans 262 1995-11-21 2016-10-06 2840 ENSG00000144230 OTTHUMG00000131533 uc010yzn.3 XM_017003833 CCDS2148 Q13304 8558062 MGI:3584514 RGD:1589785 GPR17 603071 objectId:88 +HGNC:4472 GPR18 G protein-coupled receptor 18 protein-coding gene gene with protein product Approved 13q32.3 13q32.3 G protein-coupled receptors, Class A orphans 262 1995-12-18 2016-10-06 2841 ENSG00000125245 OTTHUMG00000017266 uc058xzd.1 L42324 XM_006719946 CCDS9491 Q14330 9205118 MGI:107859 RGD:1304889 GPR18 602042 objectId:89 +HGNC:4473 GPR19 G protein-coupled receptor 19 protein-coding gene gene with protein product Approved 12p13.1 12p13.1 G protein-coupled receptors, Class A orphans 262 1996-08-08 2016-10-06 2842 ENSG00000183150 OTTHUMG00000168705 uc001raq.2 NM_006143 CCDS8652 Q15760 MGI:892973 RGD:71045 GPR19 602927 objectId:90 +HGNC:4475 GPR20 G protein-coupled receptor 20 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 G protein-coupled receptors, Class A orphans 262 1996-08-16 2015-08-25 2843 ENSG00000204882 OTTHUMG00000164484 uc003ywf.5 U66579 NM_005293 CCDS34949 Q99678 18347022 MGI:2441803 RGD:620034 GPR20 601908 objectId:91 +HGNC:4476 GPR21 G protein-coupled receptor 21 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 G protein-coupled receptors, Class A orphans 262 1996-08-16 2016-10-05 2844 ENSG00000188394 OTTHUMG00000020631 uc064voc.1 BC066885 NM_005294 CCDS6849 Q99679 MGI:2441890 RGD:1586383 GPR21 601909 objectId:92 +HGNC:4477 GPR22 G protein-coupled receptor 22 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 G protein-coupled receptors, Class A orphans 262 1996-08-16 2016-10-06 2845 ENSG00000172209 OTTHUMG00000154902 uc003vef.4 U66581 XM_011516056 CCDS5744 Q99680 9073069 MGI:1920260 RGD:1310848 GPR22 601910 objectId:93 +HGNC:4480 GPR25 G protein-coupled receptor 25 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 G protein-coupled receptors, Class A orphans 262 1996-12-27 2015-08-25 2848 ENSG00000170128 OTTHUMG00000035788 uc001gvn.3 U91939 NM_005298 CCDS1405 O00155 9020062 MGI:2686146 RGD:1311611 GPR25 602174 objectId:95 +HGNC:4481 GPR26 G protein-coupled receptor 26 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 G protein-coupled receptors, Class A orphans 262 1997-02-05 2016-10-05 2849 ENSG00000154478 OTTHUMG00000019204 uc001lhh.4 NM_153442 CCDS7636 Q8NDV2 MGI:2441758 RGD:619843 GPR26 604847 objectId:96 +HGNC:4482 GPR27 G protein-coupled receptor 27 protein-coding gene gene with protein product Approved 3p13 03p13 SREB1 G protein-coupled receptors, Class A orphans 262 1997-02-05 2016-10-05 2850 ENSG00000170837 OTTHUMG00000158810 uc011bge.3 AB040799 NM_018971 CCDS2915 Q9NS67 10833454 MGI:1202299 RGD:71067 GPR27 605187 objectId:97 +HGNC:4486 GPR31 G protein-coupled receptor 31 protein-coding gene gene with protein product Approved 6q27 06q27 "HETER1|12-HETER" "hydroxyeicosatetraenoic (HETE) acid receptor 1|12-(S)-HETE acid receptor" G protein-coupled receptors, Class A orphans 262 1997-04-21 2015-09-07 2853 ENSG00000120436 OTTHUMG00000016013 uc011egq.3 U65402 NM_005299 CCDS5299 O00270 "9205127|21712392" MGI:1354372 RGD:1305187 GPR31 602043 objectId:98 +HGNC:4487 GPR32 G protein-coupled receptor 32 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 RVDR1 resolvin D1 receptor G protein-coupled receptors, Class A orphans 262 1997-06-12 2014-11-19 2854 ENSG00000142511 OTTHUMG00000183079 uc010ycf.3 AF045764 NM_001506 CCDS12801 O75388 9653656 RGD:11496573 GPR32 603195 objectId:99 +HGNC:4488 GPR32P1 G protein-coupled receptor 32, pseudogene 1 pseudogene pseudogene Approved 19q13.33 19q13.33 GPR32P G protein-coupled receptor 32, pseudogene 1998-07-22 2011-04-14 2011-04-14 2016-07-26 2855 ENSG00000269565 OTTHUMG00000182880 AF045765 NG_001131 Q8NGA4 9653656 PGOHUM00000295404 +HGNC:4489 GPR33 G protein-coupled receptor 33 (gene/pseudogene) protein-coding gene gene with protein product Approved 14q12 14q12 "G protein-coupled receptor 33, pseudogene|G protein-coupled receptor 33 pseudogene|G protein-coupled receptor 33" G protein-coupled receptors, Class A orphans 262 1997-06-12 2007-12-17 2015-09-07 2856 ENSG00000214943 OTTHUMG00000154921 uc021rsa.3 AF045767 NM_001197184 CCDS73628 Q49SQ1 9653656 MGI:1277106 RGD:1306830 610118 objectId:100 +HGNC:4490 GPR34 G protein-coupled receptor 34 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 G protein-coupled receptors, Class A orphans 262 1997-06-12 2015-08-25 2857 ENSG00000171659 OTTHUMG00000021375 uc004dfp.4 AF039686 NM_005300 CCDS14258 Q9UPC5 "10395919|10036181" MGI:1346334 RGD:1563681 GPR34 300241 objectId:101 +HGNC:4491 GPR34P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-04-10 +HGNC:4492 GPR35 G protein-coupled receptor 35 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 G protein-coupled receptors, Class A orphans 262 1997-06-12 2015-08-25 2859 ENSG00000178623 OTTHUMG00000133356 uc061ujc.1 NM_001195382 "CCDS2541|CCDS56174" Q9HC97 9479505 MGI:1929509 RGD:1309404 GPR35 602646 367100 objectId:102 +HGNC:4493 GPR36 G protein-coupled receptor 36 other unknown Approved reserved reserved 1997-06-12 2013-03-18 2860 +HGNC:4494 GPR37 G protein-coupled receptor 37 protein-coding gene gene with protein product Approved 7q31.33 07q31.33 "EDNRBL|hET(B)R-LP|PAELR" endothelin receptor type B-like G protein-coupled receptor 37 (endothelin receptor type B-like) G protein-coupled receptors, Class A orphans 262 1997-06-12 2016-03-14 2016-10-05 2861 ENSG00000170775 OTTHUMG00000157197 uc003vli.5 NM_005302 CCDS5792 O15354 9339362 MGI:1313297 RGD:619848 GPR37 602583 objectId:103 +HGNC:14923 GPR37L1 G protein-coupled receptor 37 like 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 ETBR-LP-2 G protein-coupled receptors, Class A orphans 262 2001-03-26 2006-02-15 2016-10-05 9283 ENSG00000170075 OTTHUMG00000035924 uc001gxj.4 AJ310210 NM_004767 CCDS1420 O60883 9539149 MGI:1928503 RGD:628835 GPR37L1 objectId:104 +HGNC:4496 GPR39 G protein-coupled receptor 39 protein-coding gene gene with protein product Approved 2q21.2 02q21.2 G protein-coupled receptors, Class A orphans 262 1997-08-28 2016-10-05 2863 ENSG00000183840 OTTHUMG00000131679 uc002ttl.4 AF034633 XM_011511021 CCDS2170 O43194 9441746 MGI:1918361 RGD:1306745 GPR39 602886 objectId:105 +HGNC:4500 GPR42 G protein-coupled receptor 42 (gene/pseudogene) protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "GPR41L|FFAR3L" GPR42P G protein-coupled receptor 42 pseudogene G protein-coupled receptors, Class A orphans 262 1997-10-10 2010-02-09 2010-02-09 2015-09-10 2866 ENSG00000126251 OTTHUMG00000157124 uc021usn.2 AF024689 NM_005305 O15529 "9344866|19630535" GPR42 603822 objectId:228 +HGNC:4503 GPR45 G protein-coupled receptor 45 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 "PSP24|PSP24A" G protein-coupled receptors, Class A orphans 262 1999-03-12 2016-10-05 11250 ENSG00000135973 OTTHUMG00000130805 uc002tco.2 AF118266 NM_007227 CCDS2066 Q9Y5Y3 10036181 MGI:2135882 RGD:1306253 GPR45 604838 objectId:106 +HGNC:4506 GPR50 G protein-coupled receptor 50 protein-coding gene gene with protein product Approved Xq28 Xq28 "H9|Mel1c" G protein-coupled receptors, Class A orphans 262 1999-03-09 2014-11-19 9248 ENSG00000102195 OTTHUMG00000024166 uc010ntg.3 U52219 NM_004224 CCDS44012 Q13585 "9933574|18400093" MGI:1333877 RGD:619863 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPR50 GPR50 300207 objectId:107 +HGNC:40259 GPR50-AS1 GPR50 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq28 Xq28 GPR50 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100128688 ENSG00000234696 OTTHUMG00000024165 uc065bpq.1 NR_135300 +HGNC:4508 GPR52 G protein-coupled receptor 52 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 G protein-coupled receptors, Class A orphans 262 1999-03-12 2016-10-05 9293 ENSG00000203737 OTTHUMG00000034901 uc001gka.2 AF096784 NM_005684 CCDS30941 Q9Y2T5 9931487 MGI:3643278 RGD:1587949 GPR52 604106 objectId:108 +HGNC:4509 GPR53P G protein-coupled receptor 53, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 "PsiGPR53|dJ271M21.8" 1999-03-12 2014-06-26 9292 ENSG00000229281 OTTHUMG00000031126 AF096785 NG_001217 9931487 PGOHUM00000243122 +HGNC:4511 GPR55 G protein-coupled receptor 55 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 G protein-coupled receptors, Class A orphans 262 1999-03-12 2016-10-05 9290 ENSG00000135898 OTTHUMG00000133224 uc010fxs.2 AF096786 NM_005683 CCDS2480 Q9Y2T6 9931487 MGI:2685064 RGD:1559828 GPR55 604107 objectId:109 +HGNC:13300 GPR61 G protein-coupled receptor 61 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 BALGR G protein-coupled receptors, Class A orphans 262 2001-11-26 2015-08-25 83873 ENSG00000156097 OTTHUMG00000011633 uc057izm.1 AF317652 XM_017002438 CCDS801 Q9BZJ8 "11165367|11690637" MGI:2441719 RGD:1310176 GPR61 606916 objectId:110 +HGNC:13301 GPR62 G protein-coupled receptor 62 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 G protein-coupled receptors, Class A orphans 262 2001-11-26 2016-10-05 118442 ENSG00000180929 OTTHUMG00000157367 uc003dca.4 AF317653 NM_080865 CCDS2838 Q9BZJ7 11165367 MGI:3525078 RGD:1560166 GPR62 606917 objectId:111 +HGNC:13302 GPR63 G protein-coupled receptor 63 protein-coding gene gene with protein product Approved 6q16.1 06q16.1 "PSP24(beta)|PSP24B" G protein-coupled receptors, Class A orphans 262 2001-04-05 2016-10-06 81491 ENSG00000112218 OTTHUMG00000015245 uc003pou.4 AF317654 XM_011536153 CCDS5036 Q9BZJ6 MGI:2135884 RGD:1306460 GPR63 606915 objectId:112 +HGNC:4517 GPR65 G protein-coupled receptor 65 protein-coding gene gene with protein product Approved 14q31.3 14q31.3 "hTDAG8|TDAG8" G protein-coupled receptors, Class A orphans 262 1999-10-22 2016-10-06 8477 ENSG00000140030 OTTHUMG00000028648 uc001xvv.3 U95218 NM_003608 CCDS9879 Q8IYL9 9655242 MGI:108031 RGD:1311832 GPR65 604620 objectId:113 +HGNC:4519 GPR68 G protein-coupled receptor 68 protein-coding gene gene with protein product Approved 14q31 14q31 OGR1 G protein-coupled receptors, Class A orphans 262 1999-10-22 2016-04-25 8111 ENSG00000119714 OTTHUMG00000167590 uc001xzh.4 U48405 XM_006720262 CCDS9894 Q15743 8661159 MGI:2441763 RGD:7533718 GPR68 601404 objectId:114 +HGNC:4526 GPR75 G protein-coupled receptor 75 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 WI-31133 G protein-coupled receptors, Class A orphans 262 1999-10-22 2016-10-05 10936 ENSG00000119737 OTTHUMG00000129280 uc002rxo.4 AF101472 NM_006794 CCDS1849 O95800 10381362 MGI:2441843 RGD:1566385 GPR75 606704 objectId:115 +HGNC:40043 GPR75-ASB3 GPR75-ASB3 readthrough other readthrough Approved 2p16.2 02p16.2 2011-05-05 2016-10-05 100302652 ENSG00000270898 OTTHUMG00000129279 uc061jcz.2 NM_001164165 CCDS54361 MGI:1929749 +HGNC:4528 GPR78 G protein-coupled receptor 78 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 G protein-coupled receptors, Class A orphans 262 2000-01-20 2014-11-19 27201 ENSG00000155269 OTTHUMG00000128483 uc003glk.5 AF411107 NM_080819 CCDS3403 Q96P69 11574155 GPR78 606921 objectId:116 +HGNC:4529 GPR79 G protein-coupled receptor 79, pseudogene pseudogene pseudogene Approved 3q25.32 03q25.32 GPR79P G protein-coupled receptors, Class A orphans 262 2000-01-20 2011-04-14 2012-08-21 27200 ENSG00000232374 OTTHUMG00000158842 AF411108 NG_001272 "11574155|19146662" PGOHUM00000250268 objectId:117 +HGNC:4533 GPR82 G protein-coupled receptor 82 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 G protein-coupled receptors, Class A orphans 262 2000-01-20 2015-08-25 27197 ENSG00000171657 OTTHUMG00000021373 uc004dft.3 AF411111 NM_080817 CCDS14259 Q96P67 11574155 MGI:2441734 RGD:2318147 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPR82 GPR82 300748 objectId:118 +HGNC:4523 GPR83 G protein-coupled receptor 83 protein-coding gene gene with protein product Approved 11q21 11q21 GPR72 G protein-coupled receptor 72 G protein-coupled receptors, Class A orphans 262 1999-07-30 2003-08-01 2003-07-30 2015-09-07 10888 ENSG00000123901 OTTHUMG00000167779 uc001pet.2 AF236081 NM_016540 "CCDS8297|CCDS81616" Q9NYM4 "10760605|11060465" MGI:95712 RGD:619891 GPR83 605569 objectId:119 +HGNC:4535 GPR84 G protein-coupled receptor 84 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 EX33 G protein-coupled receptors, Class A orphans 262 2000-05-23 2015-08-25 53831 ENSG00000139572 OTTHUMG00000169839 uc058owr.1 AF237762 XM_011538495 CCDS8878 Q9NQS5 11273702 MGI:1934129 RGD:1585277 GPR84 606383 objectId:120 +HGNC:4536 GPR85 G protein-coupled receptor 85 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 SREB2 G protein-coupled receptors, Class A orphans 262 2000-05-23 2016-10-06 54329 ENSG00000164604 OTTHUMG00000156933 uc003vgq.3 AF250237 XM_017012352 CCDS5758 P60893 "10978537|10833454" MGI:1927851 RGD:71011 GPR85 605188 objectId:121 +HGNC:4538 GPR87 G protein-coupled receptor 87 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 GPR95 G protein-coupled receptors, Class A orphans 262 2000-05-23 2016-10-06 53836 ENSG00000138271 OTTHUMG00000159858 uc003eyt.4 AF237763 NM_023915 CCDS3157 Q9BY21 11273702 MGI:1934133 RGD:1307852 GPR87 606379 objectId:122 +HGNC:4539 GPR88 G protein-coupled receptor 88 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "G-protein coupled receptor 88|G protein coupled receptor 88" G protein-coupled receptors, Class A orphans 262 2000-06-02 2006-02-15 2016-10-05 54112 ENSG00000181656 OTTHUMG00000010981 uc001dth.4 AB042411 NM_022049 CCDS772 Q9GZN0 MGI:1927653 RGD:61921 GPR88 607468 objectId:123 +HGNC:31984 GPR89A G protein-coupled receptor 89A protein-coding gene gene with protein product Approved 1q21.1 01q21.1 UNQ192 2006-02-13 2007-06-06 2007-06-06 2015-08-27 653519 ENSG00000117262 OTTHUMG00000013738 uc001eot.3 AB097024 NM_001097612 "CCDS72857|CCDS72858" B7ZAQ6 MGI:1914799 GPR89A 612821 +HGNC:13840 GPR89B G protein-coupled receptor 89B protein-coding gene gene with protein product Approved 1q21.2 01q21.2 SH120 "GPR89|GPR89C" "G protein-coupled receptor 89|G protein-coupled receptor 89C" 2004-07-28 2007-06-06 2007-06-06 2016-10-05 51463 ENSG00000188092 OTTHUMG00000013452 uc001epv.5 U78723 NM_016334 CCDS930 P0CG08 11042152 MGI:1914799 RGD:1304837 GPR89B 612806 +HGNC:13951 GPR89P G protein-coupled receptor 89 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 C11H1.2-Lp 2004-01-16 2016-10-06 394254 ENSG00000216915 OTTHUMG00000014481 NG_000934 PGOHUM00000301282 +HGNC:4541 GPR90 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-04-10 +HGNC:14963 GPR101 G protein-coupled receptor 101 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 G protein-coupled receptors, Class A orphans 262 2001-04-23 2016-10-12 83550 ENSG00000165370 OTTHUMG00000022521 uc011mwh.2 AF411115 NM_054021 CCDS14662 Q96P66 11574155 MGI:2685211 RGD:1564196 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPR101|LRG_1000|http://www.lrg-sequence.org/LRG/LRG_1000" GPR101 300393 420409 objectId:125 +HGNC:17830 GPR107 G protein-coupled receptor 107 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "KIAA1624|RP11-88G17|FLJ20998|LUSTR1" 7TM orphan receptors 310 2002-01-29 2016-10-06 57720 ENSG00000148358 OTTHUMG00000020804 uc004bzd.3 AF376725 XM_017014953 "CCDS35162|CCDS48041|CCDS48042" Q5VW38 MGI:2139054 RGD:1305882 GPR107 objectId:651 +HGNC:17829 GPR108 G protein-coupled receptor 108 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 LUSTR2 7TM orphan receptors 310 2002-01-29 2015-08-25 56927 ENSG00000125734 OTTHUMG00000170129 uc002mfp.4 XM_017027012 CCDS42479 Q9NPR9 MGI:1925558 RGD:735149 GPR108 +HGNC:19060 GPR119 G protein-coupled receptor 119 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "hGPCR2|GPCR2" G protein-coupled receptors, Class A orphans 262 2003-11-26 2015-08-25 139760 ENSG00000147262 OTTHUMG00000022397 uc011muv.3 AY288416 NM_178471 CCDS14625 Q8TDV5 "12044878|14623098" MGI:2668412 RGD:727808 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPR119 GPR119 300513 objectId:126 +HGNC:19346 GPR130 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-08-14 +HGNC:17482 GPR132 G protein-coupled receptor 132 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 G2A G2 accumulation G protein-coupled receptors, Class A orphans 262 2003-12-10 2016-10-05 29933 ENSG00000183484 OTTHUMG00000140173 uc001yqd.5 AF083955 NM_013345 "CCDS9997|CCDS61567" Q9UNW8 12086852 MGI:1890220 RGD:1310817 GPR132 606167 objectId:128 +HGNC:19991 GPR135 G protein-coupled receptor 135 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "HUMNPIIY20|PAFR" G protein-coupled receptors, Class A orphans 262 2003-11-26 2015-08-25 64582 ENSG00000181619 OTTHUMG00000140325 uc010apj.4 AY288418 NM_022571 CCDS9738 Q8IZ08 14623098 MGI:2676315 RGD:727844 GPR135 607970 objectId:129 +HGNC:24300 GPR137 G protein-coupled receptor 137 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "C11orf4|GPR137A|TM7SF1L1" 7TM orphan receptors 310 2006-01-26 2006-01-26 2014-11-19 56834 ENSG00000173264 OTTHUMG00000167817 uc058cvw.1 AJ250392 NM_020155 "CCDS8066|CCDS53655|CCDS53656|CCDS53657|CCDS53658" Q96N19 "10873569|12732197" MGI:2147529 RGD:1586317 GPR137 objectId:652 +HGNC:11862 GPR137B G protein-coupled receptor 137B protein-coding gene gene with protein product Approved 1q42.3 01q42.3 TM7SF1 transmembrane 7 superfamily member 1 (upregulated in kidney) 1997-10-27 2006-01-26 2006-01-26 2016-10-05 7107 ENSG00000077585 OTTHUMG00000037994 uc001hxq.3 AF027826 NM_003272 CCDS1609 O60478 9521871 MGI:1891463 RGD:1307342 GPR137B 604658 +HGNC:25445 GPR137C G protein-coupled receptor 137C protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "DKFZp762F0713|TM7SF1L2" 2006-01-26 2015-08-25 283554 ENSG00000180998 OTTHUMG00000171104 uc001wzu.4 BX647179 XM_290615 CCDS45106 Q8N3F9 MGI:1917963 RGD:1563070 GPR137C +HGNC:19995 GPR139 G protein-coupled receptor 139 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 PGR3 G protein-coupled receptors, Class A orphans 262 2004-05-26 2016-10-06 124274 ENSG00000180269 OTTHUMG00000177690 uc002dgu.2 AY255545 NM_001002911 CCDS32398 Q6DWJ6 "26349500|26396690" MGI:2685341 RGD:1311729 GPR139 objectId:130 +HGNC:19997 GPR141 G protein-coupled receptor 141 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 PGR13 G protein-coupled receptors, Class A orphans 262 2003-11-26 2014-11-19 353345 ENSG00000187037 OTTHUMG00000102105 uc064cwu.1 AY288420 NM_181791 CCDS5451 Q7Z602 "12679517|14623098" MGI:2672983 RGD:727906 GPR141 609045 objectId:131 +HGNC:20088 GPR142 G protein-coupled receptor 142 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 PGR2 G protein-coupled receptors, Class A orphans 262 2003-11-26 2016-10-06 350383 ENSG00000257008 OTTHUMG00000178581 uc032fqt.2 AY255622 NM_181790 CCDS11698 Q7Z601 14623098 MGI:2668437 RGD:1559926 GPR142 609046 objectId:132 +HGNC:20145 GPR143 G protein-coupled receptor 143 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 ocular albinism 1 OA1 ocular albinism 1 (Nettleship-Falls) 7TM orphan receptors 310 2003-12-01 2003-12-01 2016-10-05 4935 ENSG00000101850 OTTHUMG00000021118 uc004cst.3 Z48804 NM_000273 CCDS14134 P51810 "7647783|10471510" MGI:107193 RGD:1565799 "Albinism Database|http://albinismdb.med.umn.edu/|Mutations of the OA1 Gene|http://www.retina-international.org/files/sci-news/oa1mut.htm" GPR143 300808 122263 objectId:203 +HGNC:18499 GPR143P G protein-coupled receptor 143 pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 OA1P ocular albinism 1 (Nettleship-Falls) Y-linked pseudogene 2002-05-22 2003-12-01 2003-12-01 2012-04-10 352896 ENSG00000232583 OTTHUMG00000035300 NG_002814 12815422 +HGNC:21718 GPR146 G protein-coupled receptor 146 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 PGR8 G protein-coupled receptors, Class A orphans 262 2003-07-14 2015-09-10 115330 ENSG00000164849 OTTHUMG00000023934 uc003sjx.5 BC014241 NM_138445 CCDS5321 Q96CH1 MGI:1933113 RGD:1560731 GPR146 objectId:133 +HGNC:23623 GPR148 G protein-coupled receptor 148 protein-coding gene gene with protein product Approved 2q21.1 02q21.1 PGR6 G protein-coupled receptors, Class A orphans 262 2003-11-25 2016-10-05 344561 ENSG00000173302 OTTHUMG00000131655 uc002trv.2 AY255532 XM_293092 CCDS2163 Q8TDV2 12679517 GPR148 objectId:134 +HGNC:23627 GPR149 G protein-coupled receptor 149 protein-coding gene gene with protein product Approved 3q25.2 03q25.2 "PGR10|IEDA" G protein-coupled receptors, Class A orphans 262 2003-11-25 2015-08-25 344758 ENSG00000174948 OTTHUMG00000159131 uc003faa.3 AY255534 XM_293580 CCDS43162 Q86SP6 12679517 MGI:2443628 RGD:619890 GPR149 objectId:135 +HGNC:23628 GPR150 G protein-coupled receptor 150 protein-coding gene gene with protein product Approved 5q15 05q15 PGR11 G protein-coupled receptors, Class A orphans 262 2003-11-26 2014-11-19 285601 ENSG00000178015 OTTHUMG00000121170 uc003kle.2 BC030197 NM_199243 CCDS4074 Q8NGU9 12679517 MGI:2441872 RGD:1564729 GPR150 objectId:136 +HGNC:23624 GPR151 G protein-coupled receptor 151 protein-coding gene gene with protein product Approved 5q32 05q32 "PGR7|GALR4" galanin receptor 4 G protein-coupled receptors, Class A orphans 262 2003-11-26 2015-08-25 134391 ENSG00000173250 OTTHUMG00000163444 uc003lod.2 AY255557 NM_194251 CCDS34266 Q8TDV0 12679517 MGI:2441887 RGD:727873 GPR151 objectId:137 +HGNC:23622 GPR152 G protein-coupled receptor 152 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 PGR5 G protein-coupled receptors, Class A orphans 262 2003-11-26 2014-11-19 390212 ENSG00000175514 OTTHUMG00000168032 uc001olm.3 AY255600 NM_206997 CCDS8165 Q8TDT2 12679517 MGI:2685519 RGD:1584082 GPR152 objectId:138 +HGNC:23618 GPR153 G protein-coupled receptor 153 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 PGR1 G protein-coupled receptors, Class A orphans 262 2003-11-26 2015-08-25 387509 ENSG00000158292 OTTHUMG00000001272 uc001amp.2 AY255529 XM_017001250 CCDS64 Q6NV75 12679517 MGI:1916157 RGD:1564170 GPR153 614269 objectId:139 +HGNC:22951 GPR155 G protein-coupled receptor 155 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "DEPDC3|DEP.7|FLJ31819|PGR22" 2003-11-26 2015-08-25 151556 ENSG00000163328 OTTHUMG00000132336 uc002uiu.5 AY255528 NM_152529 "CCDS2259|CCDS74605" Q7Z3F1 12679517 MGI:1915776 RGD:1309162 GPR155 +HGNC:20844 GPR156 G protein-coupled receptor 156 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "PGR28|GABABL" G protein-coupled receptors, Class C orphans 285 2003-11-26 2014-11-19 165829 ENSG00000175697 OTTHUMG00000159406 uc011bjg.3 AF488739 NM_153002 "CCDS2997|CCDS54629" Q8NFN8 12591167 MGI:2653880 RGD:708438 GPR156 610464 objectId:209 +HGNC:23687 GPR157 G protein-coupled receptor 157 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 FLJ12132 7TM orphan receptors 310 2003-12-01 2015-08-25 80045 ENSG00000180758 OTTHUMG00000001758 uc001apq.2 AK022194 NM_024980 CCDS100 Q5UAW9 10574461 MGI:2442046 RGD:1311096 GPR157 objectId:205 +HGNC:23689 GPR158 G protein-coupled receptor 158 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 KIAA1136 G protein-coupled receptors, Class C orphans 285 2003-12-01 2016-10-05 57512 ENSG00000151025 OTTHUMG00000017832 uc001isj.4 AB032962 XM_166110 CCDS31166 Q5T848 25792749 MGI:2441697 RGD:1305841 GPR158 614573 objectId:210 +HGNC:44163 GPR158-AS1 GPR158 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 GPR158 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100128811 ENSG00000233642 OTTHUMG00000017830 uc010qde.2 AK094758 NR_027333 +HGNC:23693 GPR160 G protein-coupled receptor 160 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 "GPCR150|GPCR1" G protein-coupled receptors, Class A orphans 262 2003-12-01 2016-10-05 26996 ENSG00000173890 OTTHUMG00000158776 uc003fgi.4 AB083583 NM_014373 CCDS3211 Q9UJ42 12044878 MGI:1919112 RGD:1560200 GPR160 objectId:140 +HGNC:23694 GPR161 G protein-coupled receptor 161 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 RE2 G protein-coupled receptors, Class A orphans 262 2003-12-01 2016-10-05 23432 ENSG00000143147 OTTHUMG00000034651 uc001gfd.5 AF091890 NM_007369 "CCDS1268|CCDS58042|CCDS58043|CCDS58044|CCDS58045|CCDS72978" Q8N6U8 11959142 MGI:2685054 RGD:1563245 GPR161 612250 426145 objectId:141 +HGNC:16693 GPR162 G protein-coupled receptor 162 protein-coding gene gene with protein product Approved 12p13 12p13 "A-2|GRCA" G protein-coupled receptors, Class A orphans 262 2005-05-09 2014-11-19 27239 ENSG00000250510 OTTHUMG00000168368 uc001qqw.2 "U47928|U47929|U47924|U47925" NM_019858 "CCDS8563|CCDS44819" Q16538 15777626 MGI:1315214 RGD:1307437 GPR162 objectId:142 +HGNC:21462 GPR165P G protein-coupled receptor 165 pseudogene pseudogene pseudogene Approved Xq12 Xq12 "PGR15|6530406P05Rik" 2006-02-16 2012-04-10 392486 NG_005303 15777626 MGI:1923456 GPR165P +HGNC:23626 GPR166P G protein-coupled receptor 166 pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 PGR9 2006-05-17 2012-05-03 442206 AB083591 NG_025935 +HGNC:30057 GPR171 G protein-coupled receptor 171 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 H963 platelet activating receptor homolog G protein-coupled receptors, Class A orphans 262 2004-07-12 2016-05-09 29909 ENSG00000174946 OTTHUMG00000159861 uc003eyq.5 AF002986 NM_013308 CCDS3155 O14626 "9370294|24043826" MGI:2442043 RGD:1585271 GPR171 objectId:143 +HGNC:18186 GPR173 G protein-coupled receptor 173 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 SREB3 "G-protein coupled receptor 173|G protein coupled receptor 173" G protein-coupled receptors, Class A orphans 262 2004-08-19 2006-02-15 2016-10-05 54328 ENSG00000184194 OTTHUMG00000021596 uc004dru.4 AB040801 NM_018969 CCDS14349 Q9NS66 10833454 MGI:1918021 RGD:620748 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPR173 GPR173 300253 objectId:144 +HGNC:30245 GPR174 G protein-coupled receptor 174 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 FKSG79 G protein-coupled receptors, Class A orphans 262 2004-09-02 2016-10-05 84636 ENSG00000147138 OTTHUMG00000021898 uc004edg.1 AF345567 NM_032553 CCDS14443 Q9BXC1 MGI:2685222 RGD:1564689 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPR174 GPR174 300903 objectId:145 +HGNC:32370 GPR176 G protein-coupled receptor 176 protein-coding gene gene with protein product Approved 15q14-q15.1 15q14-q15.1 Gm1012 G protein-coupled receptors, Class A orphans 262 2005-10-30 2016-10-11 11245 ENSG00000166073 OTTHUMG00000129873 uc001zkj.3 BC067106 NM_007223 "CCDS10051|CCDS61588|CCDS61589" Q14439 7893747 MGI:2685858 RGD:621718 GPR176 612183 objectId:637 +HGNC:31371 GPR179 G protein-coupled receptor 179 protein-coding gene gene with protein product Approved 17q12 17q12 CSNB1E GPR158L1 "GPR158-like 1|GPR179" G protein-coupled receptors, Class C orphans 285 2004-03-22 2006-02-16 2006-02-16 2015-09-07 440435 ENSG00000277399 OTTHUMG00000188545 uc032gkv.1 NM_001004334 CCDS42308 Q6PRD1 MGI:2443409 RGD:1560033 GPR179 614515 292381 objectId:211 +HGNC:28899 GPR180 G protein-coupled receptor 180 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 ITR intimal thickness related receptor 2006-03-20 2014-11-19 160897 ENSG00000152749 OTTHUMG00000017207 uc001vly.4 AF339823 NM_180989 CCDS9472 Q86V85 12538434 MGI:1930949 RGD:1359193 GPR180 607787 +HGNC:13708 GPR182 G protein-coupled receptor 182 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "hrhAMR|G10D|AM-R" ADMR adrenomedullin receptor G protein-coupled receptors, Class A orphans 262 2001-07-09 2007-09-24 2007-09-24 2014-11-19 11318 ENSG00000166856 OTTHUMG00000171005 uc001smk.4 Y13583 NM_007264 CCDS8927 O15218 "9367907|9535752" MGI:109545 RGD:61903 GPR182 605307 objectId:146 +HGNC:3128 GPR183 G protein-coupled receptor 183 protein-coding gene gene with protein product Approved 13q32.3 13q32.3 EBV-induced G-protein coupled receptor 2 EBI2 Epstein-Barr virus induced gene 2 (lymphocyte-specific G protein-coupled receptor) G protein-coupled receptors, Class A orphans 262 1994-05-19 2008-07-21 2008-07-21 2014-11-19 1880 ENSG00000169508 OTTHUMG00000017263 uc001vog.4 L08177 NM_004951 CCDS9492 P32249 8383238 MGI:2442034 RGD:1598095 GPR183 605741 objectId:81 +HGNC:24834 GPRASP1 G protein-coupled receptor associated sorting protein 1 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "GASP|GASP1" Armadillo repeat containing 409 2004-08-25 2014-11-19 9737 ENSG00000198932 OTTHUMG00000022061 uc004ejj.5 AB007903 NM_014710 CCDS35352 Q5JY77 "9455477|15086532|16221301" MGI:1917418 RGD:621343 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPRASP1 GPRASP1 300417 +HGNC:25169 GPRASP2 G protein-coupled receptor associated sorting protein 2 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "GASP2|FLJ37327" Armadillo repeat containing 409 2004-08-25 2015-08-25 114928 ENSG00000158301 OTTHUMG00000185178 uc004ejm.3 AK094646 NM_138437 CCDS14501 Q96D09 "15086532|16221301" MGI:2442071 RGD:1561019 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GPRASP2 GPRASP2 300969 +HGNC:9836 GPRC5A G protein-coupled receptor class C group 5 member A protein-coding gene gene with protein product Approved 12p13.1 12p13.1 "RAIG1|TIG1|PEIG-1" RAI3 "retinoic acid induced 3|G protein-coupled receptor, class C, group 5, member A" G protein-coupled receptors, Class C orphans 285 1999-01-12 2005-05-03 2016-02-24 2016-02-24 9052 ENSG00000013588 OTTHUMG00000168710 uc001rba.4 AF095448 NM_003979 CCDS8657 Q8NFJ5 "8832110|9857033" MGI:1891250 RGD:1310804 GPRC5A 604138 objectId:258 +HGNC:13308 GPRC5B G protein-coupled receptor class C group 5 member B protein-coding gene gene with protein product Approved 16p12.3 16p12.3 RAIG-2 "G protein-coupled receptor, family C, group 1, member B|G protein-coupled receptor, family C, group 5, member B|G protein-coupled receptor, class C, group 5, member B" G protein-coupled receptors, Class C orphans 285 2000-01-11 2016-02-24 2016-10-06 51704 ENSG00000167191 OTTHUMG00000131460 uc002dgt.4 AF202640 NM_016235 CCDS10581 Q9NZH0 "10493829|10783259" MGI:1927596 RGD:1309510 GPRC5B 605948 objectId:259 +HGNC:13309 GPRC5C G protein-coupled receptor class C group 5 member C protein-coding gene gene with protein product Approved 17q25.1 17q25.1 RAIG-3 "G protein-coupled receptor, family C, group 5, member C|G protein-coupled receptor, class C, group 5, member C" G protein-coupled receptors, Class C orphans 285 2000-09-19 2016-02-24 2016-10-06 55890 ENSG00000170412 OTTHUMG00000067613 uc002jkp.4 AF207989 XM_017024855 "CCDS11699|CCDS42378" Q9NQ84 10945465 MGI:1917605 RGD:1311408 GPRC5C 605949 objectId:260 +HGNC:13310 GPRC5D G protein-coupled receptor class C group 5 member D protein-coding gene gene with protein product Approved 12p13.1 12p13.1 "G protein-coupled receptor, family C, group 5, member D|G protein-coupled receptor, class C, group 5, member D" G protein-coupled receptors, Class C orphans 285 2000-09-19 2016-02-24 2016-10-05 55507 ENSG00000111291 OTTHUMG00000168711 uc010shp.2 AF209923 XM_017019582 CCDS8658 Q9NZD1 MGI:1935037 RGD:1563887 GPRC5D 607437 objectId:261 +HGNC:18510 GPRC6A G protein-coupled receptor class C group 6 member A protein-coding gene gene with protein product Approved 6q22.1 06q22.1 bA86F4.3 "G protein-coupled receptor, family C, group 6, member A|G protein-coupled receptor, class C, group 6, member A" Calcium sensing receptors 279 2002-04-26 2016-02-24 2016-10-05 222545 ENSG00000173612 OTTHUMG00000015447 uc003pxj.3 AF502962 XM_017010475 "CCDS5112|CCDS69184|CCDS69185" Q5T6X5 MGI:2429498 RGD:735077 GPRC6A 613572 objectId:55 +HGNC:24835 GPRIN1 G protein regulated inducer of neurite outgrowth 1 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "GRIN1|KIAA1893" 2006-08-24 2014-11-19 114787 ENSG00000169258 OTTHUMG00000130659 uc003meo.2 AB067480 NM_052899 CCDS4405 Q7Z2K8 11572484 MGI:1349455 RGD:1308762 GPRIN1 611239 +HGNC:23730 GPRIN2 G protein regulated inducer of neurite outgrowth 2 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 MGC15171 KIAA0514 KIAA0514 2003-12-04 2006-08-24 2006-08-24 2014-11-19 9721 ENSG00000204175 OTTHUMG00000018107 uc057taj.1 BC011672 NM_014696 CCDS73101 O60269 9628581 MGI:2444560 RGD:1308922 GPRIN2 611240 +HGNC:27733 GPRIN3 GPRIN family member 3 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "GRIN3|FLJ42625" 2006-08-24 2014-11-19 285513 ENSG00000185477 OTTHUMG00000161044 uc003hsm.2 AK124616 NM_198281 CCDS34030 Q6ZVF9 15488195 MGI:1924785 RGD:1565690 GPRIN3 611241 +HGNC:4549 GPS1 G protein pathway suppressor 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "COPS1|CSN1" COP9 signalosome subunit 1 COP9 signalosome 932 1997-10-10 2014-11-19 2873 ENSG00000169727 OTTHUMG00000178484 uc002kdl.2 NM_212492 "CCDS11800|CCDS32774|CCDS82225|CCDS82226|CCDS82227|CCDS82228" Q13098 9535219 MGI:2384801 RGD:621532 GPS1 601934 +HGNC:4550 GPS2 G protein pathway suppressor 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 1997-10-10 2014-11-19 2874 ENSG00000132522 OTTHUMG00000102198 uc002gfx.2 U28963 NM_004489 CCDS11100 Q13227 8943324 MGI:1891751 RGD:1562746 GPS2 601935 +HGNC:49622 GPS2P1 G protein pathway suppressor 2 pseudogene 1 pseudogene pseudogene Approved 9p24.2 09p24.2 2014-01-24 2014-01-24 392281 ENSG00000236496 OTTHUMG00000019451 NG_021604 PGOHUM00000235944 +HGNC:49623 GPS2P2 G protein pathway suppressor 2 pseudogene 2 pseudogene pseudogene Approved 3q27.3 03q27.3 2014-01-24 2014-01-24 100132058 ENSG00000230951 OTTHUMG00000156576 NG_022285 PGOHUM00000238295 +HGNC:17858 GPSM1 G-protein signaling modulator 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "AGS3|DKFZP727I051" AGS3 homolog (C. elegans) G-protein signalling modulator 1 (AGS3-like, C. elegans) Tetratricopeptide repeat domain containing 769 2004-02-03 2010-06-24 2015-09-11 26086 ENSG00000160360 OTTHUMG00000020930 uc004chd.2 AI272212 NM_015597 "CCDS6996|CCDS48055|CCDS48056" Q86YR5 "11278352|10969064" MGI:1915089 RGD:628682 GPSM1 609491 +HGNC:29501 GPSM2 G-protein signaling modulator 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "LGN|Pins" DFNB82 "G-protein signalling modulator 2 (AGS3-like, C. elegans)|deafness, autosomal recessive 82" Tetratricopeptide repeat domain containing 769 2004-02-03 2010-06-24 2015-09-11 29899 ENSG00000121957 OTTHUMG00000011730 uc010ovc.3 AY136740 NM_013296 CCDS792 P81274 "11832491|8973305|19888295|20602914|21348867" MGI:1923373 RGD:1560967 GPSM2 609245 240651 +HGNC:13945 GPSM3 G-protein signaling modulator 3 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "NG1|G18|G18.1a|G18.1b|G18.2|AGS4" activator of G-protein signaling 4 C6orf9 "chromosome 6 open reading frame 9|G-protein signalling modulator 3 (AGS3-like, C. elegans)" 2001-04-06 2004-02-04 2010-06-24 2016-10-05 63940 ENSG00000213654 OTTHUMG00000031244 uc011iwf.2 AF155657 NM_022107 CCDS34419 Q9Y4H4 "2259622|15096500" MGI:2146785 RGD:1303014 GPSM3 +HGNC:4552 GPT glutamic--pyruvic transaminase protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "ALT1|GPT1" alanine aminotransferase glutamic-pyruvate transaminase (alanine aminotransferase) 2001-06-22 2016-06-10 2016-06-10 2875 ENSG00000167701 OTTHUMG00000165176 uc033cct.2 XM_011516993 CCDS6430 P24298 MGI:95802 RGD:621720 GPT 138200 2.6.1.2 +HGNC:18062 GPT2 glutamic--pyruvic transaminase 2 protein-coding gene gene with protein product Approved 16q11.2 16q11.2 ALT2 alanine aminotransferase 2 glutamic pyruvate transaminase 2 2002-03-05 2016-06-10 2016-10-05 84706 ENSG00000166123 OTTHUMG00000132541 uc002eel.4 XM_017023790 "CCDS10725|CCDS45478" Q8TD30 MGI:1915391 RGD:1305462 GPT2 138210 2.6.1.2 +HGNC:4553 GPX1 glutathione peroxidase 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 Selenoproteins 890 2001-06-22 2016-10-05 2876 ENSG00000233276 OTTHUMG00000156837 uc021wxw.2 NM_000581 "CCDS43091|CCDS54582" P07203 9605859 MGI:104887 RGD:2729 GPX1 138320 1.11.1.9 +HGNC:4560 GPX1P1 glutathione peroxidase pseudogene 1 pseudogene pseudogene Approved Xp22.2 Xp22.2 "GPXL2|GPXP1" 1988-07-25 2010-01-14 2014-11-19 441481 ENSG00000197582 OTTHUMG00000021150 NG_012792 PGOHUM00000241193 +HGNC:4561 GPX1P2 glutathione peroxidase pseudogene 2 pseudogene pseudogene Approved 21q21.3 21q21.3 "GPXL2|GPXP2P" "GPXL1|GPXP2" 1988-07-25 2010-01-14 2014-11-19 2884 ENSG00000215326 OTTHUMG00000078697 NG_001134 1487153 PGOHUM00000239055 +HGNC:4554 GPX2 glutathione peroxidase 2 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 GSHPX-GI glutathione peroxidase 2 (gastrointestinal) Selenoproteins 890 1993-05-03 2015-02-23 2015-02-23 2877 ENSG00000176153 OTTHUMG00000171677 uc021ruq.3 NR_138078 CCDS41964 P18283 "8428933|8287691" MGI:106609 RGD:727780 GPX2 138319 1.11.1.9 +HGNC:4555 GPX3 glutathione peroxidase 3 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 glutathione peroxidase 3 (plasma) Selenoproteins 890 1993-05-03 2015-02-23 2015-08-28 2878 ENSG00000211445 OTTHUMG00000163693 uc021yga.2 NM_001329790 CCDS43389 P22352 "3619451|8287691" MGI:105102 RGD:69224 GPX3 138321 1.11.1.9 +HGNC:4556 GPX4 glutathione peroxidase 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PHGPx|MCSP" phospholipid hydroperoxidase glutathione peroxidase 4 (phospholipid hydroperoxidase) Selenoproteins 890 1993-05-03 2012-03-01 2014-11-19 2879 ENSG00000167468 OTTHUMG00000181874 uc021umg.3 "BC039849|X71973" NM_002085 CCDS42457 P36969 "8287691|8039723|10464096" MGI:104767 RGD:69226 GPX4 138322 406611 +HGNC:4557 GPX5 glutathione peroxidase 5 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 epididymal androgen-related protein 1994-11-23 2014-09-29 2015-09-11 2880 ENSG00000224586 OTTHUMG00000016307 uc003nll.3 AJ005277 NM_001509 "CCDS4652|CCDS4653" O75715 9639555 MGI:104886 RGD:69227 GPX5 603435 1.11.1.9 +HGNC:4558 GPX6 glutathione peroxidase 6 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 GPXP3 "glutathione peroxidase pseudogene 3|glutathione peroxidase 6 (olfactory)" Selenoproteins 890 1994-11-23 2015-02-23 2015-09-11 257202 ENSG00000198704 OTTHUMG00000044828 uc021yrx.1 NM_182701 CCDS43432 P59796 MGI:1922762 RGD:628789 GPX6 607913 1.11.1.9 +HGNC:4559 GPX7 glutathione peroxidase 7 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "FLJ14777|GPX6|NPGPx" 1995-09-01 2016-10-05 2882 ENSG00000116157 OTTHUMG00000008322 uc001cue.4 AF091092 NM_015696 CCDS569 Q96SL4 15294905 MGI:1914555 RGD:1306999 GPX7 615784 +HGNC:33100 GPX8 glutathione peroxidase 8 (putative) protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "UNQ847|EPLA847" 2008-09-29 2016-06-28 493869 ENSG00000164294 OTTHUMG00000162601 uc003jpq.3 BC029424 NM_001008397 "CCDS34156|CCDS78009|CCDS82997" Q8TED1 24566470 MGI:1916840 RGD:1307506 GPX8 1.11.1.9 +HGNC:29305 GRAMD1A GRAM domain containing 1A protein-coding gene gene with protein product Approved 19q13.11 19q13.11 FLJ90346 KIAA1533 KIAA1533 GRAM domain containing 1146 2004-02-10 2005-11-02 2005-11-02 2016-10-06 57655 ENSG00000089351 OTTHUMG00000182464 uc010xse.2 AK074864 NM_020895 "CCDS42546|CCDS46046" Q96CP6 10819331 MGI:105490 RGD:1311022 GRAMD1A +HGNC:29214 GRAMD1B GRAM domain containing 1B protein-coding gene gene with protein product Approved 11q24.1 11q24.1 KIAA1201 GRAM domain containing 1146 2005-11-02 2015-09-11 57476 ENSG00000023171 OTTHUMG00000166004 uc001pyx.4 AB033027 XM_370660 "CCDS53720|CCDS66253|CCDS66254|CCDS81640" Q3KR37 10574462 MGI:1925037 RGD:1305443 GRAMD1B +HGNC:25252 GRAMD1C GRAM domain containing 1C protein-coding gene gene with protein product Approved 3q13.31 03q13.31 DKFZp434C0328 GRAM domain containing 1146 2005-11-02 2015-09-11 54762 ENSG00000178075 OTTHUMG00000159340 uc003eaq.5 NM_017577 "CCDS33826|CCDS54625" Q8IYS0 12975309 MGI:2443024 RGD:1305433 GRAMD1C +HGNC:27287 GRAMD2 GRAM domain containing 2 protein-coding gene gene with protein product Approved 15q23 15q23 GRAM domain containing 1146 2005-11-02 2005-11-03 2005-11-03 2014-11-19 196996 ENSG00000175318 OTTHUMG00000172708 uc002atq.4 AK002016 NM_001012642 CCDS32283 Q8IUY3 12477932 MGI:3528937 RGD:1564007 GRAMD2 +HGNC:24911 GRAMD3 GRAM domain containing 3 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 "NS3TP2|FLJ21313" HCV NS3 transactivated protein 2 GRAM domain containing 1146 2005-11-03 2005-11-03 2014-11-19 65983 ENSG00000155324 OTTHUMG00000128943 uc003ktu.4 BC008590 NM_023927 "CCDS4136|CCDS54891|CCDS54892|CCDS54893|CCDS54894" Q96HH9 12477932 MGI:1914815 RGD:1311016 GRAMD3 +HGNC:29113 GRAMD4 GRAM domain containing 4 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "KIAA0767|DIP" death-inducing-protein GRAM domain containing 1146 2008-03-03 2014-11-19 23151 ENSG00000075240 OTTHUMG00000150402 uc062fgc.1 NM_015124 CCDS33672 Q6IC98 15565177 MGI:2676308 RGD:1309983 GRAMD4 613691 +HGNC:39653 GRAMD4P1 GRAM domain containing 4 pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 2011-03-18 2014-11-19 100631252 ENSG00000227874 OTTHUMG00000155592 NG_029309 PGOHUM00000259655 +HGNC:39654 GRAMD4P2 GRAM domain containing 4 pseudogene 2 pseudogene pseudogene Approved 22q11.1 22q11.1 2011-03-18 2014-11-19 100873881 ENSG00000235992 OTTHUMG00000155641 NG_032336 PGOHUM00000246364 +HGNC:49138 GRAMD4P3 GRAM domain containing 4 pseudogene 3 pseudogene pseudogene Approved 14q11.2 14q11.2 2013-09-19 2015-07-30 100631248 ENSG00000278301 OTTHUMG00000188244 NG_029292 PGOHUM00000292553 +HGNC:49139 GRAMD4P4 GRAM domain containing 4 pseudogene 4 pseudogene pseudogene Approved 14q11.2 14q11.2 2013-09-19 2015-02-04 106480248 ENSG00000274369 OTTHUMG00000188535 NG_043865 PGOHUM00000292265 +HGNC:49140 GRAMD4P5 GRAM domain containing 4 pseudogene 5 pseudogene pseudogene Approved 15q11.2 15q11.2 2013-09-19 2013-09-19 100631249 ENSG00000259089 OTTHUMG00000171805 NG_029296 PGOHUM00000258907 +HGNC:49141 GRAMD4P6 GRAM domain containing 4 pseudogene 6 pseudogene pseudogene Approved 15q11.2 15q11.2 2013-09-19 2013-09-19 100631250 ENSG00000258848 OTTHUMG00000171733 NG_029297 PGOHUM00000258909 +HGNC:49142 GRAMD4P7 GRAM domain containing 4 pseudogene 7 pseudogene pseudogene Approved 18p11.21 18p11.21 2013-09-19 2013-09-19 100631251 ENSG00000266242 OTTHUMG00000178701 NG_029305 PGOHUM00000259275 +HGNC:49143 GRAMD4P8 GRAM domain containing 4 pseudogene 8 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-09-19 2013-09-19 100631247 ENSG00000270930 OTTHUMG00000184418 NG_029310 PGOHUM00000259763 +HGNC:4562 GRAP GRB2-related adaptor protein protein-coding gene gene with protein product Approved 17p11.2 17p11.2 SH2 domain containing 741 1998-09-29 2015-08-25 10750 ENSG00000154016 OTTHUMG00000059436 uc002guy.4 U52518 NM_006613 "CCDS11202|CCDS82085" Q13588 "8647802|8995379" MGI:1918770 RGD:1306884 GRAP 604330 +HGNC:4563 GRAP2 GRB2-related adaptor protein 2 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "Grf40|GrbX|GRBLG|GADS|Mona" SH2 domain containing 741 1999-05-17 2016-10-05 9402 ENSG00000100351 OTTHUMG00000151097 uc003ayh.3 AF102694 NM_004810 CCDS13999 O75791 "9878555|10224278" MGI:1333842 RGD:1307605 GRAP2 604518 +HGNC:37240 GRAPL GRB2 related adaptor protein like protein-coding gene gene with protein product Approved 17p11.2 17p11.2 SH2 domain containing 741 2009-10-02 2016-06-10 2016-06-10 400581 ENSG00000189152 OTTHUMG00000059435 uc010cqk.2 BC026233 NM_001129778 CCDS45627 Q8TC17 MGI:1918770 GRAPL +HGNC:18707 GRASP general receptor for phosphoinositides 1 associated scaffold protein protein-coding gene gene with protein product Approved 12q13.13 12q13.13 Tamalin GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein PDZ domain containing 1220 2002-05-30 2016-06-10 2016-07-08 160622 ENSG00000161835 OTTHUMG00000169595 uc001rzo.3 AC019244 NM_001271856 "CCDS8817|CCDS61124" Q7Z6J2 10828067 MGI:1860303 RGD:70554 GRASP 612027 +HGNC:32680 GRASPOS GRP1-associated scaffold protein opposite strand other unknown Approved 12q13.13 12q13.13 2006-03-31 2013-03-18 692159 BC028005 +HGNC:4566 GRB2 growth factor receptor bound protein 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 NCKAP2 growth factor receptor-bound protein 2 SH2 domain containing 741 1994-03-04 2015-11-12 2016-10-05 2885 ENSG00000177885 OTTHUMG00000134332 uc002jnx.5 NM_002086 "CCDS11721|CCDS11722" P62993 10051406 MGI:95805 RGD:619758 GRB2 108355 +HGNC:4567 GRB7 growth factor receptor bound protein 7 protein-coding gene gene with protein product Approved 17q12 17q12 growth factor receptor-bound protein 7 "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 1996-05-30 2015-11-12 2015-11-12 2886 ENSG00000141738 OTTHUMG00000133253 uc002hsr.4 D43772 NM_005310 "CCDS11345|CCDS56028|CCDS82116" Q14451 MGI:102683 RGD:619759 GRB7 601522 +HGNC:4564 GRB10 growth factor receptor bound protein 10 protein-coding gene gene with protein product Approved 7p12.1 07p12.1 growth factor receptor-bound protein 10 "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 1996-05-30 2015-11-12 2016-10-12 2887 ENSG00000106070 OTTHUMG00000150622 uc003tpl.3 NM_005311 "CCDS43582|CCDS43583|CCDS47586" Q13322 MGI:103232 RGD:1566234 LRG_1032|http://www.lrg-sequence.org/LRG/LRG_1032 GRB10 601523 +HGNC:4565 GRB14 growth factor receptor bound protein 14 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 growth factor receptor-bound protein 14 "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 1996-05-30 2015-11-12 2016-10-05 2888 ENSG00000115290 OTTHUMG00000132135 uc002ucl.4 NM_004490 CCDS2222 Q14449 8812444 MGI:1355324 RGD:61869 GRB14 601524 +HGNC:24885 GREB1 growth regulation by estrogen in breast cancer 1 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 KIAA0575 gene regulated by estrogen in breast cancer 2009-09-04 2009-09-10 2015-09-11 9687 ENSG00000196208 OTTHUMG00000141276 uc002rbk.2 NM_014668 "CCDS33146|CCDS33147|CCDS42655" Q4ZG55 11103799 MGI:2149712 RGD:1564091 GREB1 611736 +HGNC:31042 GREB1L growth regulation by estrogen in breast cancer 1 like protein-coding gene gene with protein product Approved 18q11.1-q11.2 18q11.1-q11.2 "FLJ13687|C18orf6" KIAA1772 "KIAA1772|growth regulation by estrogen in breast cancer-like" 2004-01-22 2009-09-08 2016-06-10 2016-10-11 80000 ENSG00000141449 OTTHUMG00000178892 uc010xam.2 AK023749 NM_024935 CCDS45836 Q9C091 11214970 MGI:3576497 RGD:1562371 GREB1L +HGNC:2001 GREM1 gremlin 1, DAN family BMP antagonist protein-coding gene gene with protein product Approved 15q13.3 15q13.3 "DRM|gremlin|DAND2|HMPS" "CKTSF1B1|CRAC1" "cysteine knot superfamily 1, BMP antagonist 1|gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis)|gremlin 1|colorectal adenoma and carcinoma 1" DAN family 1246 1999-12-02 2004-05-07 2013-02-26 2014-11-18 26585 ENSG00000166923 OTTHUMG00000129319 uc001zhe.3 NM_013372 "CCDS10029|CCDS53927" O60565 "9660951|10026205|22561515" MGI:1344337 GREM1 603054 303758 +HGNC:17655 GREM2 gremlin 2, DAN family BMP antagonist protein-coding gene gene with protein product Approved 1q43 01q43 "Prdc|FLJ21195|CKTSF1B2|DAND3" protein related to DAN and cerberus "gremlin 2, cysteine knot superfamily, homolog (Xenopus laevis)|gremlin 2" DAN family 1246 2004-07-30 2013-02-26 2014-11-19 64388 ENSG00000180875 OTTHUMG00000039909 uc001hys.4 AK024848 NM_022469 CCDS31070 Q9H772 15039429 MGI:1344367 RGD:1560008 GREM2 608832 +HGNC:17923 GRHL1 grainyhead like transcription factor 1 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "LBP-32|MGR" TFCP2L2 "transcription factor CP2-like 2|grainyhead-like 1 (Drosophila)" 2004-01-05 2005-07-11 2016-01-11 2016-10-05 29841 ENSG00000134317 OTTHUMG00000151704 uc002raa.4 AF198489 NM_014552 CCDS33144 Q9NZI5 "10644752|12393799|12175488" MGI:2182540 RGD:1305735 GRHL1 609786 +HGNC:2799 GRHL2 grainyhead like transcription factor 2 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "FLJ13782|BOM" "DFNA28|TFCP2L3" "deafness, autosomal dominant 28|transcription factor CP2-like 3|grainyhead-like 2 (Drosophila)" 1999-06-24 2005-07-11 2016-01-11 2016-01-11 79977 ENSG00000083307 OTTHUMG00000149915 uc010mbu.4 AK023844 NM_024915 "CCDS34931|CCDS83312" Q6ISB3 "12393799|23814079" MGI:2182543 RGD:1561191 GRHL2 608576 159507 +HGNC:25839 GRHL3 grainyhead like transcription factor 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 SOM TFCP2L4 "transcription factor CP2-like 4|grainyhead-like 3 (Drosophila)" 2004-06-25 2005-07-11 2016-01-11 2016-10-05 57822 ENSG00000158055 OTTHUMG00000003040 uc001bix.3 AY231161 NM_021180 "CCDS251|CCDS252|CCDS44088|CCDS53284" Q8TE85 "12549979|23685552" MGI:2655333 RGD:1308320 GRHL3 608317 390766 +HGNC:4570 GRHPR glyoxylate and hydroxypyruvate reductase protein-coding gene gene with protein product Approved 9p13.2 09p13.2 PH2 primary hyperoxaluria type 2 GLXR "glyoxylate reductase/hydroxypyruvate reductase|glyoxylate reductase and hydroxypyruvate reductase" 1999-03-26 2016-07-21 2016-10-05 9380 ENSG00000137106 OTTHUMG00000019914 uc003zzu.2 AF134895 NM_012203 CCDS6609 Q9UBQ7 "10524214|10484776" MGI:1923488 RGD:1308851 GRHPR 604296 122278 "1.1.1.79|1.1.1.81" +HGNC:4571 GRIA1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 "GluA1|GLURA" GLUR1 glutamate receptor, ionotropic, AMPA 1 Glutamate ionotropic receptor AMPA type subunits 1200 1992-02-13 2016-02-05 2016-10-06 2890 ENSG00000155511 OTTHUMG00000130148 uc003luy.5 XM_011537635 "CCDS4322|CCDS47318|CCDS58986|CCDS58987|CCDS58988|CCDS58989" P42261 "1652753|1319477" MGI:95808 RGD:621531 GRIA1 138248 objectId:444 +HGNC:4572 GRIA2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "GluA2|GLURB" GLUR2 glutamate receptor, ionotropic, AMPA 2 Glutamate ionotropic receptor AMPA type subunits 1200 1992-02-26 2016-02-05 2016-02-05 2891 ENSG00000120251 OTTHUMG00000133836 uc003ipl.5 XM_017008113 "CCDS3797|CCDS43274|CCDS43275" P42262 1311100 MGI:95809 RGD:61862 GRIA2 138247 objectId:445 +HGNC:4573 GRIA3 glutamate ionotropic receptor AMPA type subunit 3 protein-coding gene gene with protein product Approved Xq25 Xq25 "GluA3|GLURC|MRX94" GLUR3 glutamate receptor, ionotrophic, AMPA 3 "X-linked mental retardation|Glutamate ionotropic receptor AMPA type subunits" "103|1200" 1992-02-26 2016-02-05 2016-02-05 2892 ENSG00000125675 OTTHUMG00000022685 uc033etl.2 U10301 NM_000828 "CCDS14604|CCDS14605|CCDS76017" P42263 "1319477|10644433" MGI:95810 RGD:70958 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GRIA3 GRIA3 305915 122282 objectId:446 +HGNC:4574 GRIA4 glutamate ionotropic receptor AMPA type subunit 4 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "GluA4|GLURD" GLUR4 glutamate receptor, ionotrophic, AMPA 4 Glutamate ionotropic receptor AMPA type subunits 1200 1992-02-26 2016-02-05 2016-10-06 2893 ENSG00000152578 OTTHUMG00000166236 uc001pix.2 U16129 XM_005271518 "CCDS8333|CCDS41706|CCDS41707" P48058 MGI:95811 RGD:61863 GRIA4 138246 objectId:447 +HGNC:4575 GRID1 glutamate ionotropic receptor delta type subunit 1 protein-coding gene gene with protein product Approved 10q23.1-q23.2 10q23.1-q23.2 "GluD1|KIAA1220" glutamate receptor, ionotropic, delta 1 Glutamate ionotropic receptor delta type subunits 1202 1997-10-21 2016-02-05 2016-10-11 2894 ENSG00000182771 OTTHUMG00000018650 uc001kdl.2 AB033046 XM_043613 CCDS31236 Q9ULK0 MGI:95812 RGD:68366 GRID1 610659 objectId:448 +HGNC:44131 GRID1-AS1 GRID1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.1 10q23.1 GRID1 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100507470 ENSG00000234942 OTTHUMG00000184154 uc001kdk.3 AK097655 NR_038986 +HGNC:4576 GRID2 glutamate ionotropic receptor delta type subunit 2 protein-coding gene gene with protein product Approved 4q22.1-q22.2 04q22.1-q22.2 "GluD2|GluR-delta-2" glutamate receptor, ionotropic, delta 2 Glutamate ionotropic receptor delta type subunits 1202 1997-10-21 2016-02-05 2016-10-11 2895 ENSG00000152208 OTTHUMG00000130975 uc011cdt.4 AF009014 XM_011531893 "CCDS3637|CCDS68758" O43424 9465309 MGI:95813 RGD:68368 GRID2 602368 365089 objectId:449 +HGNC:18464 GRID2IP Grid2 interacting protein protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1|glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein" PDZ domain containing 1220 2005-01-20 2016-02-05 2016-10-05 392862 ENSG00000215045 OTTHUMG00000155531 uc011jwx.3 XM_294249 CCDS47537 A4D2P6 14612983 MGI:2176213 RGD:1310492 GRID2IP 610639 +HGNC:4577 GRIFIN galectin-related inter-fiber protein protein-coding gene gene with protein product Approved 7p22.3 07p22.3 1998-12-15 2015-09-07 402635 ENSG00000275572 OTTHUMG00000152042 uc064bae.1 XM_011515405 A4D1Z8 "9786891|18087242" MGI:1925248 RGD:71055 +HGNC:4579 GRIK1 glutamate ionotropic receptor kainate type subunit 1 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 GluK1 GLUR5 glutamate receptor, ionotropic, kainate 1 Glutamate ionotropic receptor kainate type subunits 1199 1992-02-26 2016-02-05 2016-10-05 2897 ENSG00000171189 OTTHUMG00000078879 uc002ynn.4 NM_001320616 "CCDS33530|CCDS42913|CCDS82656|CCDS82658|CCDS82659" P39086 8468067 MGI:95814 RGD:2732 GRIK1 138245 objectId:450 +HGNC:16458 GRIK1-AS1 GRIK1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 "C21orf9|NCRNA00110|GRIK1AS|GRIK1-AS" "chromosome 21 open reading frame 9|non-protein coding RNA 110|GRIK1 antisense RNA (non-protein coding)|GRIK1 antisense RNA 1 (non-protein coding)" 2001-08-24 2010-11-25 2012-08-15 2016-10-05 642976 ENSG00000174680 OTTHUMG00000081875 uc011acu.3 AF107258 NR_027021 +HGNC:1282 GRIK1-AS2 GRIK1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 "C21orf41|NCRNA00258" "chromosome 21 open reading frame 41|non-protein coding RNA 258|GRIK1 antisense RNA 2 (non-protein coding)" 2000-05-23 2011-08-11 2012-08-15 2015-01-29 100379661 AY081145 NR_033368 GRIK1-AS2 +HGNC:4580 GRIK2 glutamate ionotropic receptor kainate type subunit 2 protein-coding gene gene with protein product Approved 6q16.3 06q16.3 "GluK2|MRT6" GLUR6 glutamate receptor, ionotropic, kainate 2 Glutamate ionotropic receptor kainate type subunits 1199 1992-02-26 2016-02-05 2016-02-05 2898 ENSG00000164418 OTTHUMG00000016328 uc003pqp.5 XM_011535777 "CCDS5048|CCDS5049|CCDS55045" Q13002 8034316 MGI:95815 RGD:2733 GRIK2 138244 205590 objectId:451 +HGNC:4581 GRIK3 glutamate ionotropic receptor kainate type subunit 3 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "GluK3|GLUR7" glutamate receptor, ionotropic, kainate 3 Glutamate ionotropic receptor kainate type subunits 1199 1993-10-21 2016-02-05 2016-02-05 2899 ENSG00000163873 OTTHUMG00000004189 uc001caz.3 U16127 NM_000831 CCDS416 Q13003 8128318 MGI:95816 RGD:71027 GRIK3 138243 objectId:452 +HGNC:4582 GRIK4 glutamate ionotropic receptor kainate type subunit 4 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "GluK4|KA1" GRIK glutamate receptor, ionotropic, kainate 4 Glutamate ionotropic receptor kainate type subunits 1199 1993-07-29 2016-02-05 2016-10-12 2900 ENSG00000149403 OTTHUMG00000048255 uc001pxn.4 S67803 NM_014619 CCDS8433 Q16099 MGI:95817 RGD:2734 LRG_1012|http://www.lrg-sequence.org/LRG/LRG_1012 GRIK4 600282 objectId:453 +HGNC:4583 GRIK5 glutamate ionotropic receptor kainate type subunit 5 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "GluK5|KA2" GRIK2 glutamate receptor, ionotropic, kainate 5 Glutamate ionotropic receptor kainate type subunits 1199 1993-10-21 2016-02-05 2016-02-05 2901 ENSG00000105737 OTTHUMG00000044573 uc060zer.1 XM_011526862 "CCDS12595|CCDS77305" Q16478 7527545 MGI:95818 RGD:2735 GRIK5 600283 objectId:454 +HGNC:4584 GRIN1 glutamate ionotropic receptor NMDA type subunit 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 GluN1 NMDAR1 "N-methyl-D-aspartate receptor subunit NR1|glutamate receptor, ionotropic, N-methyl D-aspartate 1" Glutamate ionotropic receptor NMDA type subunits 1201 1992-09-18 2016-02-05 2016-02-05 2902 ENSG00000176884 OTTHUMG00000020976 uc004cln.4 NM_007327 "CCDS7031|CCDS7032|CCDS43910|CCDS55354|CCDS55355" Q05586 1350383 MGI:95819 RGD:2736 GRIN1 138249 282786 objectId:455 +HGNC:4585 GRIN2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding gene gene with protein product Approved 16p13.2 16p13.2 GluN2A NMDAR2A glutamate receptor, ionotropic, N-methyl D-aspartate 2A Glutamate ionotropic receptor NMDA type subunits 1201 1992-09-18 2016-02-05 2016-02-05 2903 ENSG00000183454 OTTHUMG00000129721 uc010uym.3 XM_017023172 "CCDS10539|CCDS45407" Q12879 9480759 MGI:95820 RGD:2737 GRIN2A 138253 289276 objectId:456 +HGNC:4586 GRIN2B glutamate ionotropic receptor NMDA type subunit 2B protein-coding gene gene with protein product Approved 12p13.1 12p13.1 GluN2B NMDAR2B glutamate receptor, ionotropic, N-methyl D-aspartate 2B Glutamate ionotropic receptor NMDA type subunits 1201 1992-09-18 2016-02-05 2016-02-05 2904 ENSG00000273079 OTTHUMG00000137373 uc001rbt.3 XM_011520629 CCDS8662 Q13224 1350383 MGI:95821 RGD:2738 GRIN2B 138252 266126 objectId:457 +HGNC:4587 GRIN2C glutamate ionotropic receptor NMDA type subunit 2C protein-coding gene gene with protein product Approved 17q25.1 17q25.1 GluN2C NMDAR2C glutamate receptor, ionotropic, N-methyl D-aspartate 2C Glutamate ionotropic receptor NMDA type subunits 1201 1992-09-18 2016-02-05 2016-02-05 2905 ENSG00000161509 OTTHUMG00000044524 uc002jlt.3 XM_017024544 "CCDS32724|CCDS62330" Q14957 9480759 MGI:95822 RGD:2739 GRIN2C 138254 objectId:458 +HGNC:4588 GRIN2D glutamate ionotropic receptor NMDA type subunit 2D protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "GluN2D|EB11|NR2D" N-methyl-d-aspartate receptor subunit 2D NMDAR2D glutamate receptor, ionotropic, N-methyl D-aspartate 2D Glutamate ionotropic receptor NMDA type subunits 1201 1993-07-29 2016-02-05 2016-02-05 2906 ENSG00000105464 OTTHUMG00000183304 uc002pjc.4 U77783 NM_000836 CCDS12719 O15399 "9480759|9418891" MGI:95823 RGD:2740 GRIN2D 602717 objectId:459 +HGNC:16767 GRIN3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding gene gene with protein product Approved 9q31.1 09q31.1 GluN3A glutamate receptor, ionotropic, N-methyl-D-aspartate 3A Glutamate ionotropic receptor NMDA type subunits 1201 2001-10-05 2016-02-05 2016-02-05 116443 ENSG00000198785 OTTHUMG00000020387 uc004bbp.3 XM_011518211 CCDS6758 Q8TCU5 MGI:1933206 RGD:621704 GRIN3A 606650 objectId:460 +HGNC:16768 GRIN3B glutamate ionotropic receptor NMDA type subunit 3B protein-coding gene gene with protein product Approved 19p13.3 19p13.3 GluN3B glutamate receptor, ionotropic, N-methyl-D-aspartate 3B Glutamate ionotropic receptor NMDA type subunits 1201 2001-10-05 2016-02-05 2016-02-05 116444 ENSG00000116032 OTTHUMG00000181904 uc002lqo.2 XM_017026243 CCDS32861 O60391 MGI:2150393 RGD:621705 GRIN3B 606651 objectId:461 +HGNC:4589 GRINA glutamate ionotropic receptor NMDA type subunit associated protein 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "HNRGW|TMBIM3|LFG1" transmembrane BAX inhibitor motif containing 3 NMDARA1 glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) Transmembrane BAX inhibitor motif containing 1215 1992-12-15 2016-02-05 2016-02-05 2907 ENSG00000178719 OTTHUMG00000165433 uc003zao.1 NM_001009184 NM_001009184 CCDS34961 Q7Z429 "1719427|8406459" MGI:1913418 RGD:628873 GRINA 138251 +HGNC:18708 GRIP1 glutamate receptor interacting protein 1 protein-coding gene gene with protein product Approved 12q14.3 12q14.3 PDZ domain containing 1220 2002-05-29 2016-10-05 23426 ENSG00000155974 OTTHUMG00000169019 uc001stk.4 AJ133439 XM_017019098 CCDS41807 Q9Y3R0 10197531 MGI:1921303 RGD:621667 GRIP1 604597 303028 +HGNC:23841 GRIP2 glutamate receptor interacting protein 2 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 KIAA1719 PDZ domain containing 1220 2003-12-15 2016-10-05 80852 ENSG00000144596 OTTHUMG00000155544 uc032rfi.1 AB051506 NM_001080423 Q9C0E4 MGI:2681173 RGD:621668 GRIP2 +HGNC:18706 GRIPAP1 GRIP1 associated protein 1 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "GRASP-1|GRASP1|KIAA1167|MPMGp800B12492Q3|DKFZp434P0630" 2002-05-30 2015-09-11 56850 ENSG00000068400 OTTHUMG00000033192 uc033ecr.2 AB032993 NM_207672 CCDS35248 Q4V328 10896157 MGI:1859616 RGD:621249 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GRIPAP1 GRIPAP1 300408 +HGNC:10013 GRK1 G protein-coupled receptor kinase 1 protein-coding gene gene with protein product Approved 13q34 13q34 "GPRK1|RK" RHOK rhodopsin kinase 1994-07-21 2004-03-24 2004-03-23 2014-11-18 6011 ENSG00000185974 OTTHUMG00000185528 uc010tkf.3 NM_002929 CCDS81785 Q15835 "8812493|15057823" MGI:1345146 RGD:619712 Mutations of the Rhodopsin Kinase Gene|http://www.retina-international.org/files/sci-news/rhokmut.htm GRK1 180381 122286 objectId:1465 2.7.11.14 +HGNC:289 GRK2 G protein-coupled receptor kinase 2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 BARK1 ADRBK1 adrenergic, beta, receptor kinase 1 Pleckstrin homology domain containing 682 1992-03-25 2016-05-16 2016-05-16 2016-10-05 156 ENSG00000173020 OTTHUMG00000167104 uc009yrn.2 X61157 NM_001619 CCDS8156 P25098 2037065 MGI:87940 RGD:2062 109635 objectId:1466 2.7.11.15 +HGNC:290 GRK3 G protein-coupled receptor kinase 3 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 BARK2 ADRBK2 adrenergic, beta, receptor kinase 2 Pleckstrin homology domain containing 682 1992-03-25 2016-05-16 2016-05-16 2016-10-05 157 ENSG00000100077 OTTHUMG00000150280 uc003abx.5 X69117 NM_005160 CCDS13832 P35626 7695743 MGI:87941 RGD:2063 109636 objectId:1467 2.7.11.15 +HGNC:4543 GRK4 G protein-coupled receptor kinase 4 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 GPRK4 GPRK2L G protein-coupled receptor kinase 2-like (Drosophila) 1993-10-14 2004-02-06 2004-02-04 2015-09-07 2868 ENSG00000125388 OTTHUMG00000159914 uc003ggn.2 NM_005307 "CCDS33946|CCDS33947|CCDS47002|CCDS68656" P32298 1338872 MGI:95801 RGD:61858 GRK4 137026 objectId:1468 +HGNC:4544 GRK5 G protein-coupled receptor kinase 5 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 GPRK5 1994-03-29 2004-02-06 2004-02-04 2015-08-28 2869 ENSG00000198873 OTTHUMG00000019149 uc001led.4 L15388 NM_005308 CCDS7612 P34947 7685906 MGI:109161 RGD:61985 GRK5 600870 objectId:1469 +HGNC:49478 GRK5-IT1 GRK5 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 10q26.11 10q26.11 GRK5 intronic transcript 1 (non-protein coding) 2013-12-20 2015-02-25 2015-02-25 101927868 ENSG00000228485 OTTHUMG00000019145 XR_246196 +HGNC:4545 GRK6 G protein-coupled receptor kinase 6 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 GPRK6 1994-03-29 2004-02-06 2004-02-04 2016-10-05 2870 ENSG00000198055 OTTHUMG00000163401 uc063kea.1 NM_002082 "CCDS34303|CCDS43406|CCDS47348" P43250 8415712 MGI:1347078 RGD:61986 GRK6 600869 objectId:1470 +HGNC:4547 GRK6P1 G protein-coupled receptor kinase 6 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 "GPRK6L|GPRK6P|GRK6PS" G protein-coupled receptor kinase 6 pseudogene 1997-04-25 2011-01-14 2011-01-14 2011-02-07 2871 ENSG00000215571 OTTHUMG00000016540 U48958 NG_001133 9016947 PGOHUM00000248520 +HGNC:17031 GRK7 G protein-coupled receptor kinase 7 protein-coding gene gene with protein product Approved 3q23 03q23 GPRK7 2002-05-27 2004-02-04 2004-02-04 2016-10-05 131890 ENSG00000114124 OTTHUMG00000159068 uc011bnd.3 NM_139209 CCDS3120 Q8WTQ7 "11717351|11754336" GRK7 606987 objectId:1471 +HGNC:4593 GRM1 glutamate metabotropic receptor 1 protein-coding gene gene with protein product Approved 6q24.3 06q24.3 "GPRC1A|mGlu1|MGLUR1|PPP1R85" protein phosphatase 1, regulatory subunit 85 glutamate receptor, metabotropic 1 "Glutamate metabotropic receptors|Protein phosphatase 1 regulatory subunits" "281|694" 1993-10-21 2016-04-06 2016-10-05 2911 ENSG00000152822 OTTHUMG00000015752 uc032xoi.2 U31215 NM_000838 "CCDS5209|CCDS47497|CCDS64548" Q13255 "9076744|9376535" MGI:1351338 RGD:2742 GRM1 604473 327283 objectId:289 +HGNC:4594 GRM2 glutamate metabotropic receptor 2 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "GPRC1B|mGlu2|MGLUR2" glutamate receptor, metabotropic 2 Glutamate metabotropic receptors 281 1993-10-21 2016-04-06 2016-04-06 2912 ENSG00000164082 OTTHUMG00000156902 uc010hlv.4 L35318 XM_017006271 CCDS2834 Q14416 7620613 MGI:1351339 RGD:2743 GRM2 604099 objectId:290 +HGNC:4595 GRM3 glutamate metabotropic receptor 3 protein-coding gene gene with protein product Approved 7q21.11-q21.12 07q21.11-q21.12 "GPRC1C|mGlu3|MGLUR3" glutamate receptor, metabotropic 3 Glutamate metabotropic receptors 281 1993-10-21 2016-04-06 2016-10-11 2913 ENSG00000198822 OTTHUMG00000022884 uc003uid.4 XM_017012073 CCDS5600 Q14832 8824806 MGI:1351340 RGD:2744 GRM3 601115 objectId:291 +HGNC:4596 GRM4 glutamate metabotropic receptor 4 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "GPRC1D|mGlu4|MGLUR4" glutamate receptor, metabotropic 4 Glutamate metabotropic receptors 281 1993-10-21 2016-04-06 2016-10-05 2914 ENSG00000124493 OTTHUMG00000014538 uc010jvh.6 U92457 XM_017010790 "CCDS4787|CCDS59010|CCDS59011|CCDS59012|CCDS75432" Q14833 "8738157|9473604" MGI:1351341 RGD:2745 GRM4 604100 objectId:292 +HGNC:4597 GRM5 glutamate metabotropic receptor 5 protein-coding gene gene with protein product Approved 11q14.2-q14.3 11q14.2-q14.3 "MGLUR5|GPRC1E|mGlu5|PPP1R86" protein phosphatase 1, regulatory subunit 86 glutamate receptor, metabotropic 5 "Glutamate metabotropic receptors|Protein phosphatase 1 regulatory subunits" "281|694" 1993-10-22 2016-04-06 2016-10-11 2915 ENSG00000168959 OTTHUMG00000134306 uc009yvm.3 D28538 NM_000842 "CCDS8283|CCDS44694" P41594 7908515 MGI:1351342 RGD:2746 GRM5 604102 objectId:293 +HGNC:40265 GRM5-AS1 GRM5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q14.2 11q14.2 GRM5 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100873989 ENSG00000255082 OTTHUMG00000167293 uc031qdb.1 NR_049724 +HGNC:4598 GRM6 glutamate metabotropic receptor 6 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "GPRC1F|mGlu6|MGLUR6|CSNB1B" glutamate receptor, metabotropic 6 Glutamate metabotropic receptors 281 1993-10-22 2016-04-06 2016-10-06 2916 ENSG00000113262 OTTHUMG00000130889 uc003mjr.4 U82083 NM_000843 CCDS4442 O15303 9215706 MGI:1351343 RGD:2747 GRM6 604096 122291 objectId:294 +HGNC:4599 GRM7 glutamate metabotropic receptor 7 protein-coding gene gene with protein product Approved 3p26.1 03p26.1 "GLUR7|GPRC1G|mGlu7|MGLUR7|PPP1R87" protein phosphatase 1, regulatory subunit 87 glutamate receptor, metabotropic 7 "Glutamate metabotropic receptors|Protein phosphatase 1 regulatory subunits" "281|694" 1995-10-11 2016-04-06 2016-10-05 2917 ENSG00000196277 OTTHUMG00000125549 uc003bqm.3 U92458 NM_000844 CCDS43042 Q14831 "8288585|8840028" MGI:1351344 RGD:619857 GRM7 604101 objectId:295 +HGNC:40267 GRM7-AS1 GRM7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p26.1 03p26.1 GRM7 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873937 ENSG00000236202 OTTHUMG00000154932 uc062ggc.1 NR_046606 +HGNC:40266 GRM7-AS2 GRM7 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p26.1 03p26.1 GRM7 antisense RNA 2 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 105376946 ENSG00000237665 OTTHUMG00000154931 uc062gfx.1 NR_131906 +HGNC:42444 GRM7-AS3 GRM7 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 3p26.1 03p26.1 GRM7 antisense RNA 3 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 101927347 ENSG00000226258 OTTHUMG00000154912 uc032rcs.2 NR_110123 +HGNC:4600 GRM8 glutamate metabotropic receptor 8 protein-coding gene gene with protein product Approved 7q31.33 07q31.33 "GLUR8|GPRC1H|mGlu8|MGLUR8" glutamate receptor, metabotropic 8 Glutamate metabotropic receptors 281 1995-10-11 2016-04-06 2016-10-06 2918 ENSG00000179603 OTTHUMG00000022888 uc003vlr.3 XM_006715938 "CCDS5794|CCDS47696" O00222 8824806 MGI:1351345 RGD:619858 GRM8 601116 objectId:296 +HGNC:4601 GRN granulin precursor protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "PCDGF|PGRN|CLN11" progranulin 1992-11-30 2016-10-05 2016-10-12 2896 ENSG00000030582 OTTHUMG00000181816 uc002igp.3 M75161 NM_002087 CCDS11483 P28799 "1417868|9826678" MGI:95832 RGD:61983 LRG_661|http://www.lrg-sequence.org/LRG/LRG_661 GRN 138945 168073 +HGNC:4605 GRP gastrin releasing peptide protein-coding gene gene with protein product Approved 18q21.32 18q21.32 "bombesin|neuromedin C|prepro-GRP" gastrin-releasing peptide Endogenous ligands 542 1986-01-01 2016-02-01 2016-10-05 2922 ENSG00000134443 OTTHUMG00000132760 uc002lhv.4 NM_002091 "CCDS11971|CCDS45877|CCDS45878" P07492 MGI:95833 RGD:621740 GRP 137260 +HGNC:19696 GRPEL1 GrpE like 1, mitochondrial protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "FLJ25609|GrpE|hMGE" GrpE-like 1, mitochondrial (E. coli) 2003-05-12 2016-01-22 2016-10-05 80273 ENSG00000109519 OTTHUMG00000090495 uc003gjy.2 AF070525 NM_025196 CCDS3396 Q9HAV7 "11311562|12840016" MGI:1334417 RGD:70947 GRPEL1 606173 +HGNC:21060 GRPEL2 GrpE like 2, mitochondrial protein-coding gene gene with protein product Approved 5q32 05q32 "DKFZp451C205|Mt-GrpE#2|FLJ23713" GrpE-like 2, mitochondrial (E. coli) 2003-07-01 2016-01-22 2016-10-05 134266 ENSG00000164284 OTTHUMG00000130048 uc003lqj.4 AL832325 NM_152407 CCDS4295 Q8TAA5 9694873 MGI:1334416 RGD:1585231 GRPEL2 +HGNC:48999 GRPEL2-AS1 GRPEL2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q32 05q32 RP11-394O4.4 2013-07-30 2015-08-07 2015-08-07 106144529 ENSG00000253618 OTTHUMG00000165071 AI857303 NR_132366 +HGNC:41969 GRPEL2P1 GrpE like 2, mitochondrial pseudogene 1 pseudogene pseudogene Approved 13q31.2 13q31.2 GrpE-like 2, mitochondrial (E. coli) pseudogene 1 2011-05-24 2016-01-22 2016-01-22 100874360 ENSG00000233211 OTTHUMG00000017172 NG_032384 PGOHUM00000248456 +HGNC:41970 GRPEL2P2 GrpE like 2, mitochondrial pseudogene 2 pseudogene pseudogene Approved Xq11.2 Xq11.2 GrpE-like 2, mitochondrial (E. coli) pseudogene 2 2011-05-24 2016-01-22 2016-01-22 100129994 ENSG00000225814 OTTHUMG00000021710 NG_022604 PGOHUM00000241352 +HGNC:41971 GRPEL2P3 GrpE like 2, mitochondrial pseudogene 3 pseudogene pseudogene Approved 7q21.3 07q21.3 GrpE-like 2, mitochondrial (E. coli) pseudogene 3 2011-05-24 2016-01-22 2016-01-22 100129871 ENSG00000230682 OTTHUMG00000155561 NG_022570 PGOHUM00000233474 +HGNC:4609 GRPR gastrin releasing peptide receptor protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "BB2|BB2R" bombesin receptor 2 Bombesin receptors 222 1991-08-06 2015-11-18 2016-06-07 2925 ENSG00000126010 OTTHUMG00000021189 uc004cxj.4 NM_005314 CCDS14174 P30550 MGI:95836 RGD:2750 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GRPR GRPR 305670 objectId:39 +HGNC:4610 GRSF1 G-rich RNA sequence binding factor 1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 RNA binding motif containing 725 1995-11-29 2016-10-06 2926 ENSG00000132463 OTTHUMG00000160846 uc010iia.2 BC040485 NM_002092 "CCDS47069|CCDS47070" Q12849 8036161 MGI:106479 RGD:1310858 GRSF1 604851 +HGNC:20310 GRTP1 growth hormone regulated TBC protein 1 protein-coding gene gene with protein product Approved 13q34 13q34 "FLJ22474|TBC1D6" 2003-01-24 2014-11-19 79774 ENSG00000139835 OTTHUMG00000017381 uc001vtn.5 AK026127 NM_024719 "CCDS9534|CCDS66591|CCDS73606" Q5TC63 11564724 MGI:1914040 RGD:1309210 GRTP1 +HGNC:39917 GRTP1-AS1 GRTP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 GRTP1 antisense RNA 1 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100874068 ENSG00000225083 OTTHUMG00000017382 uc058ymx.1 NR_120385 +HGNC:21270 GRWD1 glutamate rich WD repeat containing 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "WDR28|GRWD|RRB1" WD repeat domain containing 362 2003-10-15 2016-06-06 2016-06-06 83743 ENSG00000105447 OTTHUMG00000183305 uc002pjd.3 AF337808 NM_031485 CCDS12720 Q9BQ67 15885502 MGI:2141989 RGD:1310649 GRWD1 610597 +HGNC:31673 GRXCR1 glutaredoxin and cysteine rich domain containing 1 protein-coding gene gene with protein product Approved 4p13 04p13 PPP1R88 protein phosphatase 1, regulatory subunit 88 DFNB25 "deafness, autosomal recessive 25|glutaredoxin, cysteine rich 1" Protein phosphatase 1 regulatory subunits 694 2008-07-04 2016-02-29 2016-10-05 389207 ENSG00000215203 OTTHUMG00000160434 uc003gwt.4 NM_001080476 CCDS43225 A8MXD5 20137778 MGI:3577767 RGD:1564635 GRXCR1 613283 225329 +HGNC:33862 GRXCR2 glutaredoxin and cysteine rich domain containing 2 protein-coding gene gene with protein product Approved 5q32 05q32 DFNB101 glutaredoxin, cysteine rich 2 2008-09-11 2016-02-29 2016-02-29 643226 ENSG00000204928 OTTHUMG00000163417 uc003lns.2 XM_017009708 CCDS34263 A6NFK2 24619944 MGI:2685697 RGD:1584696 GRXCR2 615762 402368 +HGNC:30229 G0S2 G0/G1 switch 2 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 putative lymphocyte G0/G1 switch gene G0/G1switch 2 2005-08-11 2014-04-22 2014-11-18 50486 ENSG00000123689 OTTHUMG00000036479 uc001hhi.5 NM_015714 CCDS1488 P27469 "1930693|10645953" MGI:1316737 RGD:1311675 G0S2 614447 +HGNC:28042 GSAP gamma-secretase activating protein protein-coding gene gene with protein product Approved 7q11.23 07q11.23 LOC54103 PION pigeon homolog (Drosophila) 2008-08-12 2013-04-05 2013-04-05 2013-04-05 54103 ENSG00000186088 OTTHUMG00000150504 uc003ugf.3 NM_017439 CCDS34672 A4D1B5 20811458 MGI:2442259 RGD:1563271 613552 +HGNC:4612 GSC goosecoid homeobox protein-coding gene gene with protein product Approved 14q32.13 14q32.13 PRD class homeoboxes and pseudogenes 521 1993-12-13 2007-07-11 2015-08-25 145258 ENSG00000133937 OTTHUMG00000170864 uc001ydu.4 NM_173849 CCDS9930 P56915 7916327 MGI:95841 RGD:631425 GSC 138890 8439 400640 +HGNC:4613 GSC2 goosecoid homeobox 2 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 GSCL goosecoid-like PRD class homeoboxes and pseudogenes 521 1997-06-18 2007-08-28 2007-08-28 2015-08-25 2928 ENSG00000063515 OTTHUMG00000150122 uc011ags.3 NM_005315 CCDS13757 O15499 9150167 MGI:892006 RGD:1305333 GSC2 601845 8554 +HGNC:13311 GSDMA gasdermin A protein-coding gene gene with protein product Approved 17q21.1 17q21.1 FLJ39120 "GSDM|GSDM1" "gasdermin|gasdermin 1" 2003-12-01 2008-07-31 2008-07-31 2016-10-06 284110 ENSG00000167914 OTTHUMG00000179522 uc002htl.1 AB093591 NM_178171 CCDS45669 Q96QA5 "12883658|15010812|17350798" "MGI:1889509|MGI:1921490|MGI:3044668" RGD:1592062 GSDMA 611218 +HGNC:23690 GSDMB gasdermin B protein-coding gene gene with protein product Approved 17q21.1 17q21.1 PRO2521 GSDML gasdermin-like 2003-12-09 2008-07-31 2008-07-31 2016-10-05 55876 ENSG00000073605 OTTHUMG00000133248 uc002htg.3 AF119884 NM_018530 "CCDS11354|CCDS42313|CCDS54119|CCDS54120" Q8TAX9 "12883658|15010812|17350798" GSDMB 611221 +HGNC:7151 GSDMC gasdermin C protein-coding gene gene with protein product Approved 8q24.21 08q24.21 MLZE melanoma-derived leucine zipper, extra-nuclear factor 2000-06-16 2008-07-31 2008-07-31 2014-05-14 56169 ENSG00000147697 OTTHUMG00000164851 uc003ysr.3 AB042405 XM_017013644 CCDS6360 Q9BYG8 17350798 "MGI:1933176|MGI:2146102|MGI:3580656|MGI:1921798" RGD:1308989 GSDMC 608384 +HGNC:25697 GSDMD gasdermin D protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "FLJ12150|DF5L" GSDMDC1 gasdermin domain containing 1 2004-05-21 2008-07-31 2008-07-31 2014-11-18 79792 ENSG00000104518 OTTHUMG00000165132 uc010mfe.4 AK096216 NM_024736 CCDS34956 P57764 "15289881|17350798" MGI:1916396 RGD:1307261 GSDMD 617042 +HGNC:28979 GSE1 Gse1 coiled-coil protein protein-coding gene gene with protein product Approved 16q24.1 16q24.1 genetic suppressor element 1 KIAA0182 "KIAA0182|Gse1 coiled-coil protein homolog (mouse)" 2006-02-22 2012-10-02 2012-12-07 2014-11-18 23199 ENSG00000131149 OTTHUMG00000137650 uc002fix.5 D80004 NM_014615 "CCDS10952|CCDS45539|CCDS62007" Q14687 "8724849|8786132" MGI:1098275 RGD:1562686 616886 +HGNC:19716 GSG1 germ cell associated 1 protein-coding gene gene with protein product Approved 12p13.1 12p13.1 MGC3146 2002-11-15 2016-10-05 83445 ENSG00000111305 OTTHUMG00000150148 uc001rbj.4 BC001796 NM_031289 "CCDS8659|CCDS44835|CCDS44836|CCDS55806|CCDS55807|CCDS55808" Q2KHT4 MGI:1194499 RGD:1306546 GSG1 +HGNC:28283 GSG1L GSG1 like protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "MGC18079|PRO19651|KTSR5831" 2006-07-04 2016-06-30 2016-10-05 146395 ENSG00000169181 OTTHUMG00000131676 uc002doy.3 AK128775 NM_144675 "CCDS10631|CCDS45450|CCDS81960" Q6UXU4 "22813734|26932439" MGI:2685483 RGD:1562278 GSG1L +HGNC:51826 GSG1L2 GSG1 like 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 2015-07-08 2016-06-30 2016-06-30 644070 ENSG00000214978 OTTHUMG00000178429 NM_001310219 CCDS82072 A8MUP6 MGI:3650209 RGD:9156678 +HGNC:19682 GSG2 germ cell associated 2, haspin protein-coding gene gene with protein product Approved 17p13.2 17p13.2 haspin germ cell associated 2 (haspin) 2005-01-19 2016-03-30 2016-10-05 83903 ENSG00000177602 OTTHUMG00000090703 uc002fwp.4 AB039834 NM_031965 CCDS11036 Q8TF76 MGI:1194498 RGD:1596276 GSG2 609240 objectId:2028 +HGNC:4614 GSK1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-02-07 +HGNC:4615 GSK2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-02-07 +HGNC:4616 GSK3A glycogen synthase kinase 3 alpha protein-coding gene gene with protein product Approved 19q13.2 19q13.2 1997-05-15 2016-10-05 2931 ENSG00000105723 OTTHUMG00000150722 uc002otb.2 XR_001753673 CCDS12599 P49840 9809441 MGI:2152453 RGD:620351 GSK3A 606784 objectId:2029 +HGNC:4617 GSK3B glycogen synthase kinase 3 beta protein-coding gene gene with protein product Approved 3q13.33 03q13.33 1997-05-15 2016-10-05 2932 ENSG00000082701 OTTHUMG00000133765 uc003edn.4 BC012760 XM_006713610 "CCDS2996|CCDS54628" P49841 10486203 MGI:1861437 RGD:70982 GSK3B 605004 objectId:2030 +HGNC:20343 GSKIP GSK3B interacting protein protein-coding gene gene with protein product Approved 14q32.2 14q32.2 GSK3beta interaction protein C14orf129 chromosome 14 open reading frame 129 2003-01-28 2012-09-25 2012-09-25 2012-09-25 51527 ENSG00000100744 OTTHUMG00000171420 uc031qqf.2 AF151044 NM_016472 CCDS32153 Q9P0R6 "16981698|21328310" MGI:1914037 RGD:1308470 616605 +HGNC:4619 GSM1 geniospasm 1 phenotype phenotype only Approved 9q13-q21 09q13-q21 1997-12-16 2008-05-14 2933 9382105 190100 +HGNC:4620 GSN gelsolin protein-coding gene gene with protein product Approved 9q33.2 09q33.2 DKFZp313L0718 amyloidosis, Finnish type gelsolin (amyloidosis, Finnish type) Gelsolin/villins 950 1988-07-19 2010-04-27 2016-10-05 2934 ENSG00000148180 OTTHUMG00000020584 uc064vkv.1 X04412 NM_000177 "CCDS6828|CCDS6829|CCDS48011|CCDS65118|CCDS75890|CCDS75891" P06396 1652889 MGI:95851 RGD:1303089 GSN 137350 122296 +HGNC:23372 GSN-AS1 GSN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q33.2 09q33.2 MOST2 C9orf31 "chromosome 9 open reading frame 31|GSN antisense RNA 1 (non-protein coding)" 2005-11-22 2012-03-13 2012-08-15 2016-10-05 57000 ENSG00000235865 OTTHUMG00000020586 uc033dha.1 AF220263 NR_103560 Q9NRJ2 +HGNC:4621 GSPT1 G1 to S phase transition 1 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "GST1|ETF3A|eRF3a" 1992-02-07 2016-10-06 2935 ENSG00000103342 OTTHUMG00000172956 uc002dbt.4 BC008391 NM_002094 "CCDS45412|CCDS45413|CCDS45414" P15170 "2511002|17700517" MGI:1316728 RGD:2751 GSPT1 139259 +HGNC:4622 GSPT2 G1 to S phase transition 2 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "eRF3b|FLJ10441" 1999-05-05 2015-09-10 23708 ENSG00000189369 OTTHUMG00000021538 uc004dpl.4 AI285711 NM_018094 CCDS14336 Q8IYD1 10575220 MGI:1316727 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GSPT2 GSPT2 300418 +HGNC:4623 GSR glutathione-disulfide reductase protein-coding gene gene with protein product Approved 8p12 08p12 glutathione S-reductase glutathione reductase 2001-06-22 2016-06-30 2016-10-05 2936 ENSG00000104687 OTTHUMG00000163946 uc003xih.3 NM_000637 "CCDS34877|CCDS56530|CCDS56531|CCDS56532" P00390 MGI:95804 RGD:621747 GSR 138300 122298 objectId:2613 1.8.1.7 +HGNC:4624 GSS glutathione synthetase protein-coding gene gene with protein product Approved 20q11.22 20q11.22 1991-05-01 2016-10-05 2937 ENSG00000100983 OTTHUMG00000032315 uc002xbg.4 NM_000178 CCDS13245 P48637 8825653 MGI:95852 RGD:2752 GSS 601002 122300 6.3.2.3 +HGNC:4626 GSTA1 glutathione S-transferase alpha 1 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 glutathione S-transferase A1 Glutathione S-transferases 567 1991-12-06 2008-11-26 2015-09-10 2938 ENSG00000243955 OTTHUMG00000014861 uc003paz.4 XM_005249034 CCDS4945 P08263 9503014 RGD:2753 GSTA1 138359 2.5.1.18 +HGNC:4627 GSTA2 glutathione S-transferase alpha 2 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 GST2 glutathione S-transferase A2 Glutathione S-transferases 567 1986-01-01 2008-11-26 2015-09-10 2939 ENSG00000244067 OTTHUMG00000016263 uc003pay.4 AL109918 NM_000846 CCDS4944 P09210 GSTA2 138360 2.5.1.18 +HGNC:4628 GSTA3 glutathione S-transferase alpha 3 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 glutathione S-transferase A3 Glutathione S-transferases 567 1994-04-29 2008-11-26 2015-09-10 2940 ENSG00000174156 OTTHUMG00000014865 uc003pbb.4 AF020919 XM_017010794 CCDS4947 Q16772 "8307579|9480897" MGI:95856 GSTA3 605449 2.5.1.18 +HGNC:4629 GSTA4 glutathione S-transferase alpha 4 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 glutathione S-transferase A4 Glutathione S-transferases 567 1998-06-22 2008-11-26 2014-11-19 2941 ENSG00000170899 OTTHUMG00000014868 uc003pbf.4 AF020918 NM_001512 CCDS4948 O15217 9480897 RGD:1309970 GSTA4 605450 2.5.1.18 +HGNC:19662 GSTA5 glutathione S-transferase alpha 5 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 glutathione S-transferase A5 Glutathione S-transferases 567 2002-11-11 2008-11-26 2015-09-10 221357 ENSG00000182793 OTTHUMG00000014857 uc003pba.2 BK000212 NM_153699 CCDS4946 Q7RTV2 12042665 "MGI:95863|MGI:1095417|MGI:3704339|MGI:3826440" GSTA5 607605 2.5.1.18 +HGNC:4630 GSTA6P glutathione S-transferase alpha 6, pseudogene pseudogene pseudogene Approved 6p12.2 06p12.2 GSTAP1 "glutathione S-transferase A pseudogene 1|glutathione S-transferase alpha pseudogene 1" Glutathione S-transferases 567 1993-05-26 2009-12-08 2009-12-08 2014-11-19 2942 ENSG00000223622 OTTHUMG00000014858 L13269 NG_001135 8307579 PGOHUM00000243196 +HGNC:4631 GSTA7P glutathione S-transferase alpha 7, pseudogene pseudogene pseudogene Approved 6p12.2 06p12.2 GSTAP6 GSTAP2 "glutathione S-transferase A pseudogene 2|glutathione S-transferase alpha pseudogene 2" Glutathione S-transferases 567 1994-05-19 2009-12-08 2009-12-08 2014-11-18 730152 ENSG00000237674 OTTHUMG00000014855 NR_033760 1329668 PGOHUM00000243194 +HGNC:49903 GSTA8P glutathione S-transferase alpha 8, pseudogene pseudogene pseudogene Approved 6p12.2 06p12.2 GSTAP7 2014-06-04 2014-06-04 100420627 ENSG00000220377 OTTHUMG00000014853 NG_025819 12042665 PGOHUM00000243193 +HGNC:49902 GSTA9P glutathione S-transferase alpha 9, pseudogene pseudogene pseudogene Approved 6p12.2 06p12.2 "GSTAP4|GSTA4P" 2014-06-04 2014-06-04 100174857 ENSG00000243236 OTTHUMG00000014863 NG_008343 12042665 PGOHUM00000243199 +HGNC:49904 GSTA10P glutathione S-transferase alpha 10, pseudogene pseudogene pseudogene Approved 6p12.2 06p12.2 GSTAP2 2014-06-04 2014-06-04 647177 ENSG00000230845 OTTHUMG00000014860 NG_029176 12042665 PGOHUM00000243198 +HGNC:49905 GSTA11P glutathione S-transferase alpha 11, pseudogene pseudogene pseudogene Approved 6p12.2 06p12.2 GSTAP3 2014-06-04 2014-06-04 647175 ENSG00000230375 OTTHUMG00000014859 NG_029175 12042665 PGOHUM00000243197 +HGNC:49906 GSTA12P glutathione S-transferase alpha 12, pseudogene pseudogene pseudogene Approved 6p12.2 06p12.2 GSTAP5 2014-06-04 2014-06-04 647169 ENSG00000217228 OTTHUMG00000014852 NG_022299 12042665 PGOHUM00000243195 +HGNC:25806 GSTCD glutathione S-transferase C-terminal domain containing protein-coding gene gene with protein product Approved 4q24 04q24 FLJ13273 Glutathione S-transferase, C-terminal domain containing 2006-04-03 2016-01-13 2016-06-15 79807 ENSG00000138780 OTTHUMG00000131211 uc003hxy.4 BC032942 NM_024751 "CCDS3672|CCDS43257" Q8NEC7 12477932 MGI:1914803 RGD:1311822 GSTCD 615912 +HGNC:16906 GSTK1 glutathione S-transferase kappa 1 protein-coding gene gene with protein product Approved 7q34 07q34 GST13 Glutathione S-transferases 567 2004-10-22 2014-11-19 373156 ENSG00000197448 OTTHUMG00000152637 uc003wci.4 NM_015917 "CCDS5877|CCDS47730|CCDS47731|CCDS47732" Q9Y2Q3 "12720545|14742434" MGI:1923513 RGD:735188 GSTK1 602321 2.5.1.18 +HGNC:4632 GSTM1 glutathione S-transferase mu 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "MU|H-B" GST1 glutathione S-transferase M1 Glutathione S-transferases 567 1989-05-24 2008-11-26 2015-09-10 2944 ENSG00000134184 OTTHUMG00000011635 uc001dyk.4 BC036805 NM_000561 "CCDS809|CCDS810" P09488 MGI:95861 RGD:2755 GSTM1 138350 2.5.1.18 +HGNC:4634 GSTM2 glutathione S-transferase mu 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 GST4 "glutathione S-transferase M2 (muscle)|glutathione S-transferase mu 2 (muscle)" Glutathione S-transferases 567 1991-12-06 2016-06-27 2016-06-27 2946 ENSG00000213366 OTTHUMG00000011638 uc001dyj.4 M63509 NM_000848 "CCDS808|CCDS44192" P28161 "2034681|2345169" MGI:1915562 RGD:2756 GSTM2 138380 2.5.1.18 +HGNC:38009 GSTM2P1 glutathione S-transferase mu 2 pseudogene 1 pseudogene pseudogene Approved 6q21 06q21 glutathione S-transferase mu 2 (muscle) pseudogene 1 2010-03-19 2016-06-27 2016-06-27 442245 ENSG00000218803 OTTHUMG00000015367 NR_002932 PGOHUM00000243327 +HGNC:4635 GSTM3 glutathione S-transferase mu 3 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 GST5 "glutathione S-transferase M3 (brain)|glutathione S-transferase mu 3 (brain)" Glutathione S-transferases 567 1991-12-06 2016-06-27 2016-06-27 2947 ENSG00000134202 OTTHUMG00000011640 uc057jbx.1 BC000088 NM_000849 CCDS812 P21266 2345169 MGI:1309466 RGD:61964 GSTM3 138390 2.5.1.18 +HGNC:16606 GSTM3P1 glutathione S-transferase mu 3 pseudogene 1 pseudogene pseudogene Approved 20p11.22 20p11.22 dJ984P4.2 GSTM3P "glutathione S-transferase M3 pseudogene|glutathione S-transferase mu 3 pseudogene" 2001-09-17 2010-03-17 2010-03-17 2014-11-19 170523 ENSG00000227693 OTTHUMG00000032028 AL133325 NG_001040 PGOHUM00000247610 +HGNC:38006 GSTM3P2 glutathione S-transferase mu 3 pseudogene 2 pseudogene pseudogene Approved 2q24.2 02q24.2 2010-03-19 2014-11-19 100421057 ENSG00000226878 OTTHUMG00000154040 NG_021533 PGOHUM00000240402 +HGNC:4636 GSTM4 glutathione S-transferase mu 4 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 glutathione S-transferase M4 Glutathione S-transferases 567 1993-05-12 2008-11-26 2015-09-11 2948 ENSG00000168765 OTTHUMG00000011642 uc001dyf.4 M96234 NM_000850 "CCDS806|CCDS807" Q03013 8276420 MGI:95862 RGD:1565825 GSTM4 138333 2.5.1.18 +HGNC:4637 GSTM5 glutathione S-transferase mu 5 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 glutathione S-transferase M5 Glutathione S-transferases 567 1993-06-15 2008-11-26 2014-11-19 2949 ENSG00000134201 OTTHUMG00000011644 uc001dyn.4 L02321 NM_000851 CCDS811 P46439 8473333 MGI:95860 GSTM5 138385 2.5.1.18 +HGNC:4633 GSTM5P1 glutathione S-transferase mu 5 pseudogene 1 pseudogene pseudogene Approved 3p25.2 03p25.2 "GST1L|GSTM1L" "glutathione S-transferase M1-like|glutathione S-transferase mu 1-like" 1989-09-20 2010-03-19 2010-03-19 2014-11-19 100505557 ENSG00000236062 OTTHUMG00000155336 NG_012650 2737666 PGOHUM00000237536 +HGNC:13312 GSTO1 glutathione S-transferase omega 1 protein-coding gene gene with protein product Approved 10q25.1 10q25.1 "GSTTLp28|P28" Glutathione S-transferases 567 2003-09-01 2015-09-11 9446 ENSG00000148834 OTTHUMG00000019001 uc001kya.4 AF212303 NM_004832 "CCDS7555|CCDS53572|CCDS53573" P78417 "10783391|12618591" MGI:1342273 RGD:70952 GSTO1 605482 "2.5.1.18|1.8.5.1|1.20.4.2" +HGNC:23064 GSTO2 glutathione S-transferase omega 2 protein-coding gene gene with protein product Approved 10q25.1 10q25.1 Glutathione S-transferases 567 2003-09-01 2015-09-11 119391 ENSG00000065621 OTTHUMG00000019006 uc001kyb.4 AY191318 NM_183239 "CCDS7556|CCDS53574|CCDS53575" Q9H4Y5 12618591 MGI:1915464 RGD:1310764 GSTO2 612314 "2.5.1.18|1.8.5.1|1.20.4.2" +HGNC:23065 GSTO3P glutathione S-transferase omega 3, pseudogene pseudogene pseudogene Approved 3q22.1 03q22.1 GSTO3P1 glutathione S-transferase omega 3 pseudogene 1 Glutathione S-transferases 567 2003-09-01 2009-12-08 2009-12-08 2014-11-19 344813 ENSG00000232829 OTTHUMG00000159700 NG_005668 12618591 PGOHUM00000238188 +HGNC:4638 GSTP1 glutathione S-transferase pi 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 GSTP "FAEES3|GST3" Glutathione S-transferases 567 1986-01-01 2008-07-18 2016-10-12 2950 ENSG00000084207 OTTHUMG00000137430 uc001omf.4 U12472 NM_000852 CCDS41679 P09211 "1885604|7587384|19915149" "MGI:2385078|MGI:95864|MGI:95865" RGD:2758 LRG_723|http://www.lrg-sequence.org/LRG/LRG_723 GSTP1 134660 2.5.1.18 +HGNC:4640 GSTP1P1 glutathione S-transferase pi 1 pseudogene 1 pseudogene pseudogene Approved 12q13.2 12q13.2 GSTP1P "GST3L|GSTPL|GSTPP" glutathione S-transferase pi 1 pseudogene 1989-06-30 2010-04-28 2010-04-28 2016-10-06 2951 ENSG00000257569 OTTHUMG00000170203 NG_004638 PGOHUM00000291688 +HGNC:4641 GSTT1 glutathione S-transferase theta 1 protein-coding gene gene with protein product Approved 22q11.23 alternate reference locus 22q11.23 alternate reference locus Glutathione S-transferases 567 1994-08-10 2015-07-31 2952 ENSG00000277656 uc002zze.4 KI270879 NM_000853 P30711 8617495 MGI:107379 GSTT1 600436 2.5.1.18 +HGNC:51839 GSTT1-AS1 GSTT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q11.23 alternate reference locus 22q11.23 alternate reference locus "lncRNA-AS-GSTT1(1-72)|lncRNA-CD244|lncRNA-BC050410" 2015-08-05 2015-08-05 106099130 "KI270879|BC050410" NR_132348 26150504 +HGNC:4642 GSTT2 glutathione S-transferase theta 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 22q11.23 22q11.23 glutathione S-transferase theta 2 Glutathione S-transferases 567 1994-08-16 2014-10-10 2015-09-07 2953 ENSG00000099984 OTTHUMG00000150786 uc062cim.2 L38503 NM_000854 P0CG29 "7789971|9729470" MGI:106188 RGD:69362 GSTT2 600437 2.5.1.18 +HGNC:33437 GSTT2B glutathione S-transferase theta 2B (gene/pseudogene) protein-coding gene gene with protein product Approved 22q11.23 22q11.23 GSTT2P Glutathione S-transferases 567 2007-06-19 2015-09-07 653689 ENSG00000133433 OTTHUMG00000150774 uc002zyw.5 BC071700 NM_001080843 CCDS33617 P0CG30 9729470 MGI:106188 GSTT2B 2.5.1.18 +HGNC:26930 GSTTP1 glutathione S-transferase theta pseudogene 1 pseudogene pseudogene Approved 22q11.23 22q11.23 HS322B1A 2007-08-17 2015-02-04 25774 ENSG00000276950 OTTHUMG00000150811 AL050257 NR_003081 PGOHUM00000297500 +HGNC:33606 GSTTP2 glutathione S-transferase theta pseudogene 2 pseudogene pseudogene Approved 22q11.23 alternate reference locus 22q11.23 alternate reference locus 2007-08-17 2015-02-04 653399 OTTHUMG00000150811 KI270879 NR_003082 +HGNC:4643 GSTZ1 glutathione S-transferase zeta 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "GSTZ1-1|MAAI|MAI" maleylacetoacetate isomerase glutathione transferase zeta 1 Glutathione S-transferases 567 1998-06-25 2012-06-22 2015-09-11 2954 ENSG00000100577 OTTHUMG00000171551 uc001xtj.4 U86529 NM_145870 "CCDS9858|CCDS9859|CCDS9860" O43708 "9396740|9417084" MGI:1341859 RGD:1589363 GSTZ1 603758 "5.2.1.2|2.5.1.18" +HGNC:20374 GSX1 GS homeobox 1 protein-coding gene gene with protein product Approved 13q12.2 13q12.2 Gsh-1 GSH1 HOXL subclass homeoboxes 518 2003-02-18 2007-07-26 2014-11-18 219409 ENSG00000169840 OTTHUMG00000016637 uc001urr.2 AB044157 NM_145657 CCDS9326 Q9H4S2 MGI:95842 RGD:1310020 GSX1 616542 8374 +HGNC:24959 GSX2 GS homeobox 2 protein-coding gene gene with protein product Approved 4q12 04q12 Gsh2 HOXL subclass homeoboxes 518 2007-07-26 2014-11-18 170825 ENSG00000180613 OTTHUMG00000128696 uc062wqq.1 NM_133267 CCDS3494 Q9BZM3 "11861295|12205114" MGI:95843 RGD:1308047 GSX2 616253 8375 +HGNC:4644 GTA entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:20887 GTDC1 glycosyltransferase like domain containing 1 protein-coding gene gene with protein product Approved 2q22.3 02q22.3 "FLJ11753|Hmat-Xa" mannosyltransferase-like glycosyltransferase-like domain containing 1 Glycosyl transferases group 1 domain containing 427 2005-01-10 2015-11-12 2015-11-12 79712 ENSG00000121964 OTTHUMG00000131835 uc010fnn.5 AY281366 NM_024659 "CCDS2185|CCDS33300|CCDS63029|CCDS74582|CCDS74583" Q4AE62 "15068588|21821951" MGI:2444269 RGD:1563393 GTDC1 610165 +HGNC:4646 GTF2A1 general transcription factor IIA subunit 1 protein-coding gene gene with protein product Approved 14q31.1 14q31.1 TFIIA TFIIA alpha/beta subunits "glucose regulated protein, 58kD pseudogene|general transcription factor IIA, 1, 19/37kDa|general transcription factor IIA 1" General transcription factors 565 1994-01-27 2016-04-26 2016-10-06 2957 ENSG00000165417 OTTHUMG00000171414 uc001xvf.4 X75383 NM_015859 "CCDS9873|CCDS9874" P52655 8224848 MGI:1933277 RGD:69246 GTF2A1 600520 +HGNC:30727 GTF2A1L general transcription factor IIA subunit 1 like protein-coding gene gene with protein product Approved 2p16.3 02p16.3 ALF TFIIA alpha/beta like factor "general transcription factor IIA, 1-like|general transcription factor IIA 1 like" 2007-08-02 2016-04-26 2016-04-26 11036 ENSG00000242441 OTTHUMG00000152038 uc002rws.4 AF106857 NM_006872 "CCDS46281|CCDS54359" Q9UNN4 "10364255|11889132|16525715" MGI:1919078 RGD:1308625 GTF2A1L 605358 +HGNC:4647 GTF2A2 general transcription factor IIA subunit 2 protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "TFIIA|HsT18745" TFIIA gamma subunit "general transcription factor IIA, 2 (12kD subunit)|general transcription factor IIA, 2, 12kDa|general transcription factor IIA 2" General transcription factors 565 1994-10-25 2016-04-26 2016-10-05 2958 ENSG00000140307 OTTHUMG00000132725 uc002agg.3 BC001919 NM_004492 CCDS10173 P52657 7958899 MGI:1933289 RGD:620720 GTF2A2 600519 +HGNC:4648 GTF2B general transcription factor IIB protein-coding gene gene with protein product Approved 1p22.2 01p22.2 TFIIB General transcription factors 565 1993-08-16 2016-10-05 2959 ENSG00000137947 OTTHUMG00000010611 uc001dmo.5 M76766 NM_001514 CCDS715 Q00403 "1876184|8162052" MGI:2385191 RGD:619735 GTF2B 189963 +HGNC:4650 GTF2E1 general transcription factor IIE subunit 1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "TFIIE-A|FE" TFIIE alpha subunit "general transcription factor IIE, polypeptide 1 (alpha subunit, 56kD)|general transcription factor IIE, polypeptide 1, alpha 56kDa" General transcription factors 565 1993-08-20 2015-11-09 2016-10-05 2960 ENSG00000153767 OTTHUMG00000159667 uc003edz.5 S67859 NM_005513 CCDS3002 P29083 "1454543|8162052" MGI:1921447 RGD:1306851 GTF2E1 189962 +HGNC:4651 GTF2E2 general transcription factor IIE subunit 2 protein-coding gene gene with protein product Approved 8p12 08p12 "TFIIE-B|FE|TF2E2" TFIIE beta subunit "general transcription factor IIE, polypeptide 2 (beta subunit, 34kD)|general transcription factor IIE, polypeptide 2, beta 34kDa" General transcription factors 565 1993-08-16 2015-11-09 2015-11-09 2961 ENSG00000197265 OTTHUMG00000163934 uc003xig.4 BC030572 NM_002095 CCDS6078 P29084 1956404 MGI:1915403 RGD:1310134 GTF2E2 189964 458989 +HGNC:4652 GTF2F1 general transcription factor IIF subunit 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "TFIIF|BTF4|RAP74|TF2F1" "general transcription factor IIF, polypeptide 1 (74kD subunit)|general transcription factor IIF, polypeptide 1, 74kDa" General transcription factors 565 1992-11-04 2015-11-09 2015-11-09 2962 ENSG00000125651 OTTHUMG00000168087 uc002meq.3 NM_002096 CCDS12165 P35269 1734284 MGI:1923848 RGD:1359646 GTF2F1 189968 +HGNC:4653 GTF2F2 general transcription factor IIF subunit 2 protein-coding gene gene with protein product Approved 13q14.12-q14.13 13q14.12-q14.13 "TFIIF|BTF4|RAP30" "general transcription factor IIF, polypeptide 1 (74kD subunit)|general transcription factor IIF, polypeptide 2, 30kDa" General transcription factors 565 1992-11-04 2015-11-09 2016-10-11 2963 ENSG00000188342 OTTHUMG00000016849 uc001uzw.4 X16901 NM_004128 CCDS9395 P13984 8162052 MGI:1915955 RGD:620772 GTF2F2 189969 +HGNC:4654 GTF2F2P1 general transcription factor IIF subunit 2 pseudogene 1 pseudogene pseudogene Approved 4q31.23 04q31.23 TFIIF GTF2F2L "general transcription factor IIF, polypeptide 2-like|general transcription factor IIF, polypeptide 2 pseudogene 1" 1994-07-26 2010-10-14 2015-11-09 2016-10-05 2964 ENSG00000251254 OTTHUMG00000161355 NG_003013 7835093 PGOHUM00000246098 +HGNC:39092 GTF2F2P2 general transcription factor IIF subunit 2 pseudogene 2 pseudogene pseudogene Approved 1p34.2 01p34.2 general transcription factor IIF, polypeptide 2 pseudogene 2 2010-10-14 2015-11-09 2015-11-09 728633 ENSG00000233910 OTTHUMG00000007456 NG_022719 PGOHUM00000243979 +HGNC:4655 GTF2H1 general transcription factor IIH subunit 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "BTF2|P62|TFIIH" "general transcription factor IIH, polypeptide 1 (62kD subunit)|general transcription factor IIH, polypeptide 1, 62kDa" "General transcription factors|Nucleotide excision repair" "565|1269" 1993-08-16 2015-11-09 2016-10-05 2965 ENSG00000110768 OTTHUMG00000167690 uc001moh.3 NM_005316 CCDS7838 P32780 "1529339|8162052" MGI:1277216 RGD:1308225 GTF2H1 189972 +HGNC:4656 GTF2H2 general transcription factor IIH subunit 2 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "BTF2|TFIIH|BTF2P44|T-BTF2P44|p44" "general transcription factor IIH, polypeptide 2 (44kD subunit)|general transcription factor IIH, polypeptide 2, 44kDa" "General transcription factors|Nucleotide excision repair" "565|1269" 1994-11-01 2015-11-09 2015-11-09 2966 ENSG00000145736 OTTHUMG00000164542 uc003kav.6 Z30094 NM_001515 CCDS34183 Q13888 8194529 MGI:1345669 RGD:1310499 GTF2H2 601748 +HGNC:31393 GTF2H2B general transcription factor IIH subunit 2B (pseudogene) pseudogene pseudogene Approved 5q13.2 05q13.2 DKFZP686M0199 "general transcription factor IIH, polypeptide 2B|general transcription factor IIH, polypeptide 2B (pseudogene)" 2008-07-04 2015-11-09 2015-11-09 653238 ENSG00000226259 OTTHUMG00000162394 NM_001098729 PGOHUM00000300994 +HGNC:31394 GTF2H2C GTF2H2 family member C protein-coding gene gene with protein product Approved 5q13.2 05q13.2 general transcription factor IIH, polypeptide 2C 2009-01-09 2014-03-28 2015-09-10 728340 ENSG00000183474 OTTHUMG00000162365 uc003jwz.6 NM_001098728 CCDS43325 Q6P1K8 MGI:1345669 GTF2H2C +HGNC:35418 GTF2H2C_2 GTF2H2 family member C, copy 2 protein-coding gene gene with protein product Approved 5q13.2 alternate reference locus 05q13.2 alternate reference locus LOC730394 GTF2H2D general transcription factor IIH, polypeptide 2D 2009-01-09 2014-03-28 2014-03-28 2014-03-28 730394 "BC064557|BC065021|GL339449" NM_001042490 Q6P1K8 +HGNC:4657 GTF2H3 general transcription factor IIH subunit 3 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "BTF2|TFIIH|P34" "general transcription factor IIH, polypeptide 3 (34kD subunit)|general transcription factor IIH, polypeptide 3, 34kDa" "General transcription factors|Nucleotide excision repair" "565|1269" 1994-11-01 2015-11-09 2015-11-09 2967 ENSG00000111358 OTTHUMG00000168697 uc001ufo.3 Z30093 NM_001516 "CCDS9252|CCDS61275|CCDS73544" Q13889 8194529 MGI:1277143 RGD:1305494 GTF2H3 601750 +HGNC:4658 GTF2H4 general transcription factor IIH subunit 4 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "TFB2|TFIIH|P52" "general transcription factor IIH, polypeptide 4 (52kD subunit)|general transcription factor IIH, polypeptide 4, 52kDa" "General transcription factors|Nucleotide excision repair" "565|1269" 1998-08-19 2015-11-09 2016-10-05 2968 ENSG00000213780 OTTHUMG00000031043 uc003nsa.2 Y07595 NM_001517 CCDS34386 Q92759 9118947 MGI:1338799 RGD:1303309 GTF2H4 601760 +HGNC:21157 GTF2H5 general transcription factor IIH subunit 5 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "FLJ30544|bA120J8.2|TTD-A|TFB5|TFIIH|TTDA" DNA repair syndrome trichothiodystrophy group A "C6orf175|TTD" "chromosome 6 open reading frame 175|trichothiodystrophy|general transcription factor IIH, polypeptide 5" "General transcription factors|Nucleotide excision repair" "565|1269" 2003-11-25 2004-07-16 2015-11-09 2016-10-12 404672 ENSG00000272047 OTTHUMG00000015906 uc003qrd.4 AK055106 NM_207118 CCDS5256 Q6ZYL4 15220921 MGI:107227 RGD:1560991 LRG_469|http://www.lrg-sequence.org/LRG/LRG_469 GTF2H5 608780 122302 +HGNC:4659 GTF2I general transcription factor IIi protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "TFII-I|BAP-135|SPIN|BTKAP1|DIWS|IB291" WBSCR6 general transcription factor II, i General transcription factors 565 1997-09-12 2009-07-23 2015-05-05 2969 ENSG00000263001 OTTHUMG00000156237 uc003uau.5 U77948 NM_032999 "CCDS5573|CCDS5574|CCDS5575|CCDS47614|CCDS64680" P78347 "9334314|9012831" MGI:1202722 RGD:727961 GTF2I 601679 122310 +HGNC:4660 GTF2IP1 general transcription factor IIi pseudogene 1 pseudogene pseudogene Approved 7q11.23 07q11.23 WBSCR7 general transcription factor II, i, pseudogene 1 1997-09-12 2015-05-18 2015-05-18 2970 ENSG00000277053 OTTHUMG00000181536 AF036613 NR_002206 9466987 PGOHUM00000302304 +HGNC:16082 GTF2IP2 general transcription factor IIi pseudogene 2 pseudogene pseudogene Approved 21q11.2 21q11.2 general transcription factor II, i, pseudogene 2 2003-03-24 2015-05-18 2015-05-18 338448 ENSG00000226930 OTTHUMG00000074198 NG_031936 PGOHUM00000297206 +HGNC:42640 GTF2IP3 general transcription factor IIi pseudogene 3 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-08-10 2015-05-18 2015-05-18 645686 ENSG00000187721 OTTHUMG00000016473 NG_023043 PGOHUM00000291863 +HGNC:51716 GTF2IP4 general transcription factor IIi pseudogene 4 pseudogene pseudogene Approved 7q11.23 07q11.23 2015-05-18 2016-01-18 2016-01-18 100093631 ENSG00000233369 OTTHUMG00000156702 NR_003580 PGOHUM00000302803 +HGNC:51717 GTF2IP5 general transcription factor IIi pseudogene 5 pseudogene pseudogene Approved 7q11.21 07q11.21 2015-05-18 2015-05-18 100420546 ENSG00000224316 OTTHUMG00000156734 NG_026590 PGOHUM00000302768 +HGNC:51718 GTF2IP6 general transcription factor IIi pseudogene 6 pseudogene pseudogene Approved 17q11.1 17q11.1 2015-05-18 2015-05-18 101927390 ENSG00000266736 OTTHUMG00000179166 PGOHUM00000294020 +HGNC:51720 GTF2IP7 general transcription factor IIi pseudogene 7 pseudogene pseudogene Approved 7q11.23 07q11.23 2015-05-18 2015-05-18 101927126 ENSG00000227038 OTTHUMG00000156626 NR_135079 PGOHUM00000302315 +HGNC:51719 GTF2IP8 general transcription factor IIi pseudogene 8 pseudogene pseudogene Approved 18p11.21 18p11.21 2015-05-18 2015-05-18 101927717 ENSG00000276318 OTTHUMG00000187942 +HGNC:51721 GTF2IP9 general transcription factor IIi pseudogene 9 pseudogene pseudogene Approved 7q11.21 07q11.21 2015-05-18 2015-05-18 106481734 ENSG00000251451 OTTHUMG00000156592 NG_045062 PGOHUM00000302268 +HGNC:51722 GTF2IP10 general transcription factor IIi pseudogene 10 pseudogene pseudogene Approved 1p36.33 01p36.33 2015-05-18 2015-05-18 107403151 NG_046805 PGOHUM00000295506 +HGNC:51724 GTF2IP11 general transcription factor IIi pseudogene 11 pseudogene pseudogene Approved 11p11.12 11p11.12 2015-05-18 2015-05-18 106480346 ENSG00000255199 OTTHUMG00000166758 NG_044634 PGOHUM00000290482 +HGNC:51723 GTF2IP12 general transcription factor IIi pseudogene 12 pseudogene pseudogene Approved 4q26 04q26 2015-05-18 2016-10-04 101926918 ENSG00000283050 OTTHUMG00000161335 NR_135112 +HGNC:51725 GTF2IP13 general transcription factor IIi pseudogene 13 pseudogene pseudogene Approved 7p12.3 07p12.3 2015-05-18 2016-10-04 101929008 ENSG00000272556 OTTHUMG00000155422 XR_242174 PGOHUM00000302610 +HGNC:51726 GTF2IP14 general transcription factor IIi pseudogene 14 pseudogene pseudogene Approved 7q11.21 07q11.21 2015-05-18 2015-05-18 106481735 ENSG00000226002 OTTHUMG00000156632 NG_043494 PGOHUM00000302753 +HGNC:51727 GTF2IP15 general transcription factor IIi pseudogene 15 pseudogene pseudogene Approved 11p11.12 11p11.12 2015-05-18 2015-05-18 107403154 NG_046807 PGOHUM00000290929 +HGNC:51728 GTF2IP16 general transcription factor IIi pseudogene 16 pseudogene pseudogene Approved 1q43 01q43 2015-05-18 2015-05-18 PGOHUM00000296137 +HGNC:51729 GTF2IP17 general transcription factor IIi pseudogene 17 pseudogene pseudogene Approved 17p13.3 17p13.3 2015-05-18 2015-05-18 107403156 NG_046809 PGOHUM00000293933 +HGNC:51730 GTF2IP18 general transcription factor IIi pseudogene 18 pseudogene pseudogene Approved 3q29 03q29 2015-05-18 2015-05-18 102723643 ENSG00000278679 OTTHUMG00000187506 XR_924908 PGOHUM00000299718 +HGNC:51731 GTF2IP19 general transcription factor IIi pseudogene 19 pseudogene pseudogene Approved 19p13.3 19p13.3 2015-05-18 2015-05-18 107403157 NG_046810 PGOHUM00000294833 +HGNC:51732 GTF2IP20 general transcription factor IIi pseudogene 20 pseudogene pseudogene Approved 1q42.11 01q42.11 2015-05-18 2016-10-04 441124 ENSG00000272645 OTTHUMG00000037471 NR_132119 +HGNC:51733 GTF2IP21 general transcription factor IIi pseudogene 21 pseudogene pseudogene Approved 1p36.33 01p36.33 2015-05-18 2015-05-18 PGOHUM00000295517 +HGNC:51734 GTF2IP22 general transcription factor IIi pseudogene 22 pseudogene pseudogene Approved 14q11.2 14q11.2 2015-05-18 2015-05-18 106480347 ENSG00000259095 OTTHUMG00000170786 NG_045924 PGOHUM00000292283 +HGNC:51735 GTF2IP23 general transcription factor IIi pseudogene 23 pseudogene pseudogene Approved 7q11.21 07q11.21 2015-05-18 2015-05-18 101929580 ENSG00000230295 OTTHUMG00000156905 NR_135738 PGOHUM00000302778 +HGNC:4661 GTF2IRD1 GTF2I repeat domain containing 1 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "MusTRD1|RBAP2|GTF3|WBSCR12|BEN|Cream1" binding factor for early enhancer WBSCR11 GTF2I repeat domain-containing 1 1998-11-06 2002-01-14 2014-11-18 9569 ENSG00000006704 OTTHUMG00000023782 uc032zrx.2 AF151354 NM_016328 "CCDS5571|CCDS47613|CCDS56492" Q9UHL9 "9774679|10198167" MGI:1861942 RGD:620856 GTF2IRD1 604318 122319 +HGNC:44136 GTF2IRD1P1 GTF2I repeat domain containing 1 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 2012-06-23 2015-02-27 2015-02-27 729156 ENSG00000230583 OTTHUMG00000156927 NR_003934 PGOHUM00000232854 +HGNC:30775 GTF2IRD2 GTF2I repeat domain containing 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "FLJ37938|GTF2IRD2A" transcription factor GTF2IRD2 2006-08-30 2014-11-19 84163 ENSG00000196275 OTTHUMG00000181527 uc032zsc.2 BC047706 NM_173537 "CCDS5576|CCDS64682" Q86UP8 15243160 MGI:2149780 GTF2IRD2 608899 +HGNC:33125 GTF2IRD2B GTF2I repeat domain containing 2B protein-coding gene gene with protein product Approved 7q11.23 07q11.23 2006-08-30 2015-09-10 389524 ENSG00000174428 OTTHUMG00000181534 uc003ubt.4 AY312850 NM_001003795 CCDS34659 Q6EKJ0 15100712 MGI:2149780 RGD:1307435 GTF2IRD2B 608900 +HGNC:33127 GTF2IRD2P1 GTF2I repeat domain containing 2 pseudogene 1 pseudogene pseudogene Approved 7q11.23 07q11.23 GTF2IRD2P GTF2I repeat domain containing 2 pseudogene 2006-08-30 2010-02-09 2010-02-09 2014-11-19 401375 ENSG00000214544 OTTHUMG00000156803 AY312852 NR_002164 15100712 +HGNC:4662 GTF3A general transcription factor IIIA protein-coding gene gene with protein product Approved 13q12.2 13q12.2 "TFIIIA|AP2" "Zinc fingers C2H2-type|General transcription factors" "28|565" 1994-12-22 2016-10-05 2971 ENSG00000122034 OTTHUMG00000016632 uc058wav.1 NM_002097 CCDS45019 Q92664 7789179 MGI:1913846 RGD:619746 GTF3A 600860 +HGNC:49744 GTF3AP1 general transcription factor IIIA pseudogene 1 pseudogene pseudogene Approved 9p24.1 09p24.1 2014-02-13 2014-02-13 100135064 ENSG00000237274 OTTHUMG00000019515 NG_007341 PGOHUM00000236373 +HGNC:49745 GTF3AP2 general transcription factor IIIA pseudogene 2 pseudogene pseudogene Approved 14q24.2 14q24.2 2014-02-13 2014-02-13 106480682 ENSG00000258966 OTTHUMG00000171287 NG_043261 PGOHUM00000247850 +HGNC:49746 GTF3AP3 general transcription factor IIIA pseudogene 3 pseudogene pseudogene Approved 2q36.1 02q36.1 2014-02-13 2014-02-13 PGOHUM00000241122 +HGNC:49747 GTF3AP4 general transcription factor IIIA pseudogene 4 pseudogene pseudogene Approved 5q21.1 05q21.1 2014-02-13 2014-02-13 100420593 NG_024707 PGOHUM00000235719 +HGNC:49748 GTF3AP5 general transcription factor IIIA pseudogene 5 pseudogene pseudogene Approved 7p21.2 07p21.2 2014-02-13 2014-02-13 100128217 ENSG00000225816 OTTHUMG00000152478 NG_022529 PGOHUM00000232598 +HGNC:49749 GTF3AP6 general transcription factor IIIA pseudogene 6 pseudogene pseudogene Approved 7q31.31 07q31.31 2014-02-13 2014-02-13 100135063 ENSG00000229982 OTTHUMG00000156949 NG_007340 PGOHUM00000232973 +HGNC:11549 GTF3BAP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-03-25 +HGNC:11550 GTF3BAP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-03-25 +HGNC:11552 GTF3BAP3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-03-25 +HGNC:4664 GTF3C1 general transcription factor IIIC subunit 1 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 TFIIIC220 "general transcription factor IIIC, polypeptide 1 (alpha subunit, 220kD )|general transcription factor IIIC, polypeptide 1, alpha 220kDa" General transcription factors 565 1993-09-29 2015-11-09 2016-10-06 2975 ENSG00000077235 OTTHUMG00000176805 uc002dov.3 U06485 NM_001520 "CCDS32414|CCDS66988" Q12789 "8164661|8127861" MGI:107887 RGD:621048 GTF3C1 603246 +HGNC:4665 GTF3C2 general transcription factor IIIC subunit 2 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "KIAA0011|TFIIIC110" "general transcription factor IIIC, polypeptide 2 (beta subunit, 110kD)|general transcription factor IIIC, polypeptide 2, beta 110kDa" "WD repeat domain containing|General transcription factors" "362|565" 1998-08-21 2015-11-09 2015-11-09 2976 ENSG00000115207 OTTHUMG00000097785 uc002rjw.2 D13636 XM_011532801 CCDS1749 Q8WUA4 7729686 MGI:1919002 RGD:1560392 GTF3C2 604883 +HGNC:40269 GTF3C2-AS1 GTF3C2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p23.3 02p23.3 2014-04-30 2014-11-18 100505624 ENSG00000234945 OTTHUMG00000151913 NR_038427 +HGNC:4666 GTF3C3 general transcription factor IIIC subunit 3 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "TFiiiC2-102|TFIIIC102" "general transcription factor IIIC, polypeptide 3 (102kD)|general transcription factor IIIC, polypeptide 3, 102kDa" "General transcription factors|Tetratricopeptide repeat domain containing" "565|769" 1999-03-16 2015-11-09 2015-11-09 9330 ENSG00000119041 OTTHUMG00000154633 uc002uts.4 AF133123 XM_005246965 "CCDS2316|CCDS56153" Q9Y5Q9 10373544 MGI:2138383 RGD:1309185 GTF3C3 604888 +HGNC:4667 GTF3C4 general transcription factor IIIC subunit 4 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "TFIIIC90|KAT12" "general transcription factor IIIC, polypeptide 4 (90kD)|general transcription factor IIIC, polypeptide 4, 90kDa" "Lysine acetyltransferases|General transcription factors" "486|565" 1999-03-16 2015-11-09 2016-10-05 9329 ENSG00000125484 OTTHUMG00000020842 uc010mzv.4 AF142328 XM_017015317 CCDS6953 Q9UKN8 10523658 MGI:2138937 RGD:1592609 GTF3C4 604892 objectId:2656 +HGNC:4668 GTF3C5 general transcription factor IIIC subunit 5 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "TFiiiC2-63|TFIIIC63|TFIIICepsilon" transcription factor IIIC, 63 kD "general transcription factor IIIC, polypeptide 5 (63kD)|general transcription factor IIIC, polypeptide 5, 63kDa" General transcription factors 565 1999-03-16 2015-11-09 2015-11-09 9328 ENSG00000148308 OTTHUMG00000020856 uc004cci.5 AF133124 NM_001122823 "CCDS6958|CCDS48050|CCDS75927" Q9Y5Q8 10373544 MGI:1917489 RGD:1305173 GTF3C5 604890 +HGNC:20872 GTF3C6 general transcription factor IIIC subunit 6 protein-coding gene gene with protein product Approved 6q21 06q21 "bA397G5.3|TFIIIC35" C6orf51 "chromosome 6 open reading frame 51|general transcription factor IIIC, polypeptide 6, alpha 35kDa" General transcription factors 565 2003-04-16 2007-07-26 2015-11-09 2015-11-09 112495 ENSG00000155115 OTTHUMG00000015370 uc003pum.4 AK057977 NM_138408 CCDS5087 Q969F1 17409385 MGI:1914621 RGD:1307434 GTF3C6 611784 +HGNC:4669 GTPBP1 GTP binding protein 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "GP-1|HSPC018" 1999-04-22 2015-09-11 9567 ENSG00000100226 OTTHUMG00000151002 uc003awg.4 U87964 NM_004286 CCDS13977 O00178 9070279 MGI:109443 RGD:1306758 GTPBP1 602245 +HGNC:4670 GTPBP2 GTP binding protein 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 2000-07-31 2016-10-05 54676 ENSG00000172432 OTTHUMG00000014744 uc003ovs.5 AB024574 XM_017010976 "CCDS4903|CCDS69124" Q9BX10 "10833435|11054535" MGI:1860138 RGD:1306367 GTPBP2 607434 +HGNC:14880 GTPBP3 GTP binding protein 3 (mitochondrial) protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "MSS1|THDF1|GTPBG3|MTGP1|FLJ14700" 2003-11-27 2016-10-06 84705 ENSG00000130299 OTTHUMG00000182766 uc002ngg.5 AF360742 NM_032620 "CCDS32950|CCDS32951|CCDS56088|CCDS59364" Q969Y2 1290633 MGI:1917609 RGD:1305367 GTPBP3 608536 448614 +HGNC:21535 GTPBP4 GTP binding protein 4 protein-coding gene gene with protein product Approved 10p15.3 10p15.3 "CRFG|NGB|FLJ10690|FLJ10686|NOG1" "G protein-binding protein CRFG| GTP-binding protein" 2003-08-11 2016-10-05 23560 ENSG00000107937 OTTHUMG00000017538 uc001ift.4 AK001548 NM_012341 CCDS31132 Q9BZE4 11316846 MGI:1916487 RGD:620783 GTPBP4 +HGNC:30189 GTPBP6 GTP binding protein 6 (putative) protein-coding gene gene with protein product Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 "PGPL|FLJ20977" pseudoautosomal GTP binding protein-like Pseudoautosomal region 1 715 2004-08-16 2014-11-19 8225 ENSG00000178605 OTTHUMG00000022694 uc033fcx.2 Y14391 NM_012227 CCDS75943 O43824 9466997 MGI:1306825 RGD:1305954 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GTPBP6 GTPBP6 300124 +HGNC:25007 GTPBP8 GTP binding protein 8 (putative) protein-coding gene gene with protein product Approved 3q13.2 03q13.2 HSPC135 GTP-binding protein 8 (putative) 2006-01-09 2016-04-04 2016-04-04 29083 ENSG00000163607 OTTHUMG00000159268 uc003dzn.4 BC037163 NM_014170 "CCDS33820|CCDS33821" Q8N3Z3 MGI:1913317 RGD:1310025 GTPBP8 +HGNC:25106 GTPBP10 GTP binding protein 10 protein-coding gene gene with protein product Approved 7q21.13 07q21.13 "DKFZP686A10121|FLJ38242|OBGH2" GTP-binding protein 10 (putative) 2006-08-15 2016-05-04 2016-05-04 85865 ENSG00000105793 OTTHUMG00000023655 uc003ukm.3 NM_033107 "CCDS5617|CCDS43614" A4D1E9 17054726 MGI:2385599 RGD:1305878 GTPBP10 610920 +HGNC:4671 GTS Gilles de la Tourette syndrome phenotype phenotype only Approved 11q23 11q23 1989-05-16 2011-02-25 2973 "16224024|10986045" +HGNC:18406 GTSCR1 Gilles de la Tourette syndrome chromosome region, candidate 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 18q22.2 18q22.2 Gilles de la Tourette syndrome chromosome region, candidate 1 2003-12-05 2014-06-04 2014-11-19 220158 ENSG00000263417 OTTHUMG00000178787 uc060pzy.1 AY262164 NM_001278515 Q86UQ5 12682296 +HGNC:13698 GTSE1 G2 and S-phase expressed 1 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "GTSE-1|B99" G-2 and S-phase expressed 1 2001-06-25 2015-12-11 2016-10-05 51512 ENSG00000075218 OTTHUMG00000150486 uc011aqy.2 AF223408 NM_016426 CCDS14074 Q9NYZ3 "10974554|10984615|12750368" MGI:1352755 RGD:1563164 GTSE1 607477 +HGNC:27163 GTSE1-AS1 GTSE1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 2013-05-17 2013-05-17 2014-02-12 150384 ENSG00000277232 OTTHUMG00000189497 BC015721 NR_024009 +HGNC:26565 GTSF1 gametocyte specific factor 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 FLJ32942 FAM112B family with sequence similarity 112, member B 2006-02-09 2007-11-27 2007-11-27 2016-10-06 121355 ENSG00000170627 OTTHUMG00000169842 uc001sgb.4 AK098819 NM_144594 CCDS8881 Q8WW33 12477932 MGI:1921424 RGD:1310791 GTSF1 +HGNC:16198 GTSF1L gametocyte specific factor 1 like protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ1028D15.4 "C20orf65|FAM112A" "chromosome 20 open reading frame 65|family with sequence similarity 112, member A" 2001-07-17 2007-11-27 2016-06-17 2016-06-17 149699 ENSG00000124196 OTTHUMG00000032510 uc002xld.4 AK058060 NM_176791 "CCDS13323|CCDS33471" Q9H1H1 MGI:1915486 RGD:1306224 GTSF1L +HGNC:4678 GUCA1A guanylate cyclase activator 1A protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "GCAP|GCAP1|COD3|dJ139D8.6|CORD14" cone dystrophy 3 "GUCA|GUCA1|C6orf131" "chromosome 6 open reading frame 131|guanylate cyclase activator 1A (retina)" EF-hand domain containing 863 1992-04-08 2015-11-19 2015-11-19 2978 ENSG00000048545 OTTHUMG00000014696 uc003orx.4 XM_011514537 CCDS4864 P43080 9425234 MGI:102770 RGD:1308712 GUCA1A 600364 122333 +HGNC:4679 GUCA1B guanylate cyclase activator 1B protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "GCAP2|RP48" guanylate cyclase activator 1B (retina) EF-hand domain containing 863 1996-12-18 2015-11-19 2015-11-19 2979 ENSG00000112599 OTTHUMG00000014697 uc003orz.4 AF173227 NM_002098 CCDS4865 Q9UMX6 9119368 MGI:1194489 RGD:1308191 GUCA1B 602275 201095 +HGNC:4680 GUCA1C guanylate cyclase activator 1C protein-coding gene gene with protein product Approved 3q13.13 03q13.13 GCAP3 guanylyl cyclase-activating protein 3 EF-hand domain containing 863 1999-03-12 2016-10-05 9626 ENSG00000138472 OTTHUMG00000159204 uc003dxj.3 AF110002 NM_005459 CCDS2954 O95843 "10037746|11860507" GUCA1C 605128 +HGNC:4682 GUCA2A guanylate cyclase activator 2A protein-coding gene gene with protein product Approved 1p34.2 01p34.2 STARA prepro-guanylin GUCA2 guanylate cyclase activator 2A (guanylin) Endogenous ligands 542 1993-05-06 2015-11-19 2016-10-05 2980 ENSG00000197273 OTTHUMG00000007023 uc001chd.2 X74322 NM_033553 CCDS465 Q02747 "1327879|7892222" MGI:102738 RGD:2766 GUCA2A 139392 +HGNC:4683 GUCA2B guanylate cyclase activator 2B protein-coding gene gene with protein product Approved 1p34.2 01p34.2 prepro-uroguanylin guanylate cyclase activator 2B (uroguanylin) Endogenous ligands 542 1997-11-14 2015-11-19 2016-10-05 2981 ENSG00000044012 OTTHUMG00000007024 uc001chc.1 BC069301 NM_007102 CCDS464 Q16661 "8605041|9268639" MGI:1270851 RGD:620044 GUCA2B 601271 +HGNC:14237 GUCD1 guanylyl cyclase domain containing 1 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "MGC1842|LLN4" C22orf13 chromosome 22 open reading frame 13 2001-02-14 2012-11-13 2012-11-13 2016-10-05 83606 ENSG00000138867 OTTHUMG00000150728 uc003aah.4 AK054681 NM_031444 "CCDS33621|CCDS63426|CCDS63427|CCDS74831|CCDS74832|CCDS74833" Q96NT3 12477932 MGI:1916028 RGD:1597571 +HGNC:4684 GUCY1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 GC-SA2 GUC1A2 guanylate cyclase 1, soluble, alpha 2 Guanylate cyclases, soluble 820 1993-11-09 2016-06-21 2016-06-21 2977 ENSG00000152402 OTTHUMG00000166296 uc001pjg.3 X63282 NM_001256424 "CCDS8335|CCDS58170" P33402 1683630 MGI:2660877 RGD:621655 GUCY1A2 601244 objectId:1289 4.6.1.2 +HGNC:4685 GUCY1A3 guanylate cyclase 1 soluble subunit alpha protein-coding gene gene with protein product Approved 4q32.1 04q32.1 GC-SA3 GUC1A3 guanylate cyclase 1, soluble, alpha 3 Guanylate cyclases, soluble 820 1993-11-09 2016-06-21 2016-06-21 2982 ENSG00000164116 OTTHUMG00000161700 uc003ioy.4 XM_005262955 "CCDS34085|CCDS54812" Q02108 1352257 MGI:1926562 RGD:68436 GUCY1A3 139396 404138 objectId:1288 4.6.1.2 +HGNC:4686 GUCY1B2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudogene pseudogene Approved 13q14.3 13q14.3 GC-SB2 "guanylate cyclase 1, soluble, beta 2|guanylate cyclase 1 solube subunit beta 2 (pseudogene)" Guanylate cyclases, soluble 820 1998-05-26 2016-06-21 2016-06-21 2974 ENSG00000123201 OTTHUMG00000016940 AF038499 NR_003923 O75343 "9889008|10449911" MGI:2660873 RGD:2770 603695 objectId:1291 4.6.1.2 +HGNC:4687 GUCY1B3 guanylate cyclase 1 soluble subunit beta protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "GC-SB3|GC-S-beta-1" GUC1B3 guanylate cyclase 1, soluble, beta 3 Guanylate cyclases, soluble 820 1993-11-09 2016-06-21 2016-06-21 2983 ENSG00000061918 OTTHUMG00000161698 uc003ipc.4 AF020340 XM_017008130 "CCDS47154|CCDS75203|CCDS77975|CCDS77976|CCDS77977|CCDS77978" Q02153 1352257 MGI:1860604 RGD:2769 GUCY1B3 139397 objectId:1290 4.6.1.2 +HGNC:4688 GUCY2C guanylate cyclase 2C protein-coding gene gene with protein product Approved 12p12.3 12p12.3 STAR "STA receptor|heat stable enterotoxin receptor" GUC2C guanylate cyclase 2C (heat stable enterotoxin receptor) Guanylate cyclase receptors 343 1994-04-15 2014-12-18 2016-10-05 2984 ENSG00000070019 OTTHUMG00000168732 uc001rcd.4 NM_004963 CCDS8664 P25092 8661067 MGI:106903 RGD:2771 GUCY2C 601330 317726 objectId:1750 +HGNC:4689 GUCY2D guanylate cyclase 2D, retinal protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "retGC|RETGC-1|ROS-GC1|CYGD|LCA1" "rod outer segment membrane guanylate cyclase|retinal guanylate cyclase 1" "CORD6|LCA|GUC2D|GUC1A4" "cone rod dystrophy 6|guanylate cyclase 2D, membrane (retina-specific)" Guanylate cyclase receptors 343 1993-11-09 2016-03-30 2016-03-30 3000 ENSG00000132518 OTTHUMG00000108169 uc002gjt.3 L26921 NM_000180 CCDS11127 Q02846 "1356371|12552567" MGI:105123 RGD:620438 Mutations of the Retinal Guanylate Cyclase Gene and the Retinal Guanylate Cyclase-activating Protein Gene|http://www.retina-international.org/files/sci-news/gcmut.htm GUCY2D 600179 122340 objectId:2031 +HGNC:4690 GUCY2EP guanylate cyclase 2E, pseudogene pseudogene pseudogene Approved 11q13.5 11q13.5 GC-E GUCY2E guanylate cyclase 2E Guanylate cyclase receptors 343 1997-12-05 2012-07-05 2012-07-05 2014-11-19 390226 ENSG00000204529 OTTHUMG00000165247 NR_024042 8838319 601138 PGOHUM00000257844 +HGNC:4691 GUCY2F guanylate cyclase 2F, retinal protein-coding gene gene with protein product Approved Xq22.3-q23 Xq22.3-q23 "GUC2DL|GC-F|RetGC-2|ROS-GC2|CYGF" guanylate cyclase 2D-like, membrane (retina-specific) Guanylate cyclase receptors 343 1997-12-05 2016-10-11 2986 ENSG00000101890 OTTHUMG00000022184 uc065aqx.1 L37378 NM_001522 CCDS14545 P51841 "8838319|7777544" MGI:105119 RGD:620439 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GUCY2F GUCY2F 300041 objectId:2899 +HGNC:31863 GUCY2GP guanylate cyclase 2G, pseudogene pseudogene pseudogene Approved 10q25.2 10q25.2 GUCY2G guanylate cyclase 2G homolog (mouse), pseudogene Guanylate cyclase receptors 343 2007-03-21 2010-03-12 2012-12-07 2014-11-18 390003 ENSG00000243316 OTTHUMG00000019058 XM_497249 XM_497249 MGI:106025 objectId:2900 +HGNC:25799 GUF1 GUF1 homolog, GTPase protein-coding gene gene with protein product Approved 4p12 04p12 FLJ13220 GUF1 GTPase homolog (S. cerevisiae) 2006-02-14 2015-07-02 2016-10-05 60558 ENSG00000151806 OTTHUMG00000128608 uc003gww.5 NM_021927 CCDS3468 Q8N442 8553703 MGI:2140726 RGD:1310774 GUF1 617064 461782 +HGNC:4693 GUK1 guanylate kinase 1 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 2001-06-22 2016-10-05 2987 ENSG00000143774 OTTHUMG00000039503 uc021pke.2 BC006249 NM_000858 "CCDS1568|CCDS53481|CCDS55689" Q16774 8647247 MGI:95871 RGD:1309638 GUK1 139270 2.7.4.8 +HGNC:4694 GUK2 guanylate kinase 2 other unknown Approved 1q32.1-q42 01q32.1-q42 2001-06-22 2013-03-18 2988 "5036631|4377261" 139280 2.7.4.8 +HGNC:4695 GULOP gulonolactone (L-) oxidase, pseudogene pseudogene pseudogene Approved 8p21.1 08p21.1 "GULO|scurvy" 1991-08-13 2009-12-08 2010-03-12 2989 ENSG00000234770 OTTHUMG00000154895 D17460 NG_001136 "8175804|3214183" MGI:1353434 240400 +HGNC:18649 GULP1 GULP, engulfment adaptor PTB domain containing 1 protein-coding gene gene with protein product Approved 2q32.1-q32.2 02q32.1-q32.2 "CED6|CED-6|GULP" 2004-01-13 2016-10-11 51454 ENSG00000144366 OTTHUMG00000132647 uc002uqf.4 AF191771 NM_016315 "CCDS2295|CCDS58742|CCDS58743" Q9UBP9 11729193 MGI:1920407 RGD:1306380 GULP1 608165 +HGNC:4696 GUSB glucuronidase beta protein-coding gene gene with protein product Approved 7q11.21 07q11.21 glucuronidase, beta 2001-06-22 2016-03-14 2016-03-14 2990 ENSG00000169919 OTTHUMG00000023735 uc003tun.4 M15182 NM_000181 "CCDS5530|CCDS64665" P08236 3468507 MGI:95872 RGD:2772 GUSB 611499 122352 3.2.1.31 +HGNC:13670 GUSBP1 glucuronidase, beta pseudogene 1 pseudogene pseudogene Approved 5p14.3 05p14.3 2006-07-28 2012-10-04 728411 ENSG00000183666 OTTHUMG00000162474 "BC064850|X75940" NG_008324 Q15486 8565635 +HGNC:18792 GUSBP2 glucuronidase, beta pseudogene 2 pseudogene pseudogene Approved 6p22.2 06p22.2 "bA239L20.5|bA239L20.1|SMA3-L|bGLU-Lp|SMAC3L" "SMAC3L2|GUSBL1" "spinal muscular atrophy candidate gene 3-like 2|glucuronidase, beta-like 1" 2003-11-26 2011-06-09 2011-06-09 2016-10-05 387036 ENSG00000241549 OTTHUMG00000014462 NR_003504 +HGNC:37301 GUSBP3 glucuronidase, beta pseudogene 3 pseudogene pseudogene Approved 5q13.2 05q13.2 2009-09-16 2014-11-19 653188 ENSG00000253203 OTTHUMG00000162368 AK124130 NR_027386 +HGNC:18220 GUSBP4 glucuronidase, beta pseudogene 4 pseudogene pseudogene Approved 6p11.2 06p11.2 "SMA3-L|FLJ13549" "C6orf216|SMAC3L|GUSBL2" "chromosome 6 open reading frame 216|spinal muscular atrophy candidate gene 3-like|glucuronidase, beta-like 2" 2004-03-23 2010-10-27 2010-10-27 2014-11-19 375513 ENSG00000239650 OTTHUMG00000014924 NR_003660 PGOHUM00000261921 +HGNC:42319 GUSBP5 glucuronidase, beta pseudogene 5 pseudogene pseudogene Approved 4q31.21 04q31.21 2011-06-09 2014-11-19 441046 ENSG00000236296 OTTHUMG00000150378 NR_003675 PGOHUM00000246093 +HGNC:42320 GUSBP6 glucuronidase, beta pseudogene 6 pseudogene pseudogene Approved 7q11.21 07q11.21 2011-06-09 2014-11-19 653435 ENSG00000224458 OTTHUMG00000156481 NG_011656 PGOHUM00000233352 +HGNC:42321 GUSBP7 glucuronidase, beta pseudogene 7 pseudogene pseudogene Approved 5q21.1 05q21.1 2011-06-09 2014-11-18 100132456 NG_011665 PGOHUM00000235339 +HGNC:42322 GUSBP8 glucuronidase, beta pseudogene 8 pseudogene pseudogene Approved 5q21.1 05q21.1 2011-06-09 2014-11-18 441066 ENSG00000227762 OTTHUMG00000162761 NG_011668 PGOHUM00000251387 +HGNC:42323 GUSBP9 glucuronidase, beta pseudogene 9 pseudogene pseudogene Approved 5q13.2 05q13.2 2011-06-09 2014-11-19 100049076 ENSG00000215630 OTTHUMG00000164583 NR_033968 +HGNC:42324 GUSBP10 glucuronidase, beta pseudogene 10 pseudogene pseudogene Approved 7p11.2 07p11.2 2011-06-09 2014-11-18 642006 ENSG00000224723 OTTHUMG00000156683 NR_030766 PGOHUM00000232759 +HGNC:42325 GUSBP11 glucuronidase, beta pseudogene 11 pseudogene pseudogene Approved 22q11.23 22q11.23 2011-06-09 2014-11-18 91316 ENSG00000228315 OTTHUMG00000150709 uc002zxh.5 NR_024448 Q6P575 PGOHUM00000250322 +HGNC:42326 GUSBP12 glucuronidase, beta pseudogene 12 pseudogene pseudogene Approved 7p11.2 07p11.2 2011-06-09 2014-11-19 642007 ENSG00000169325 OTTHUMG00000156685 NG_011667 PGOHUM00000250869 +HGNC:4697 GUSM entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-12-02 +HGNC:25813 GVINP1 GTPase, very large interferon inducible pseudogene 1 pseudogene pseudogene Approved 11p15.4 11p15.4 "VLIG-1|FLJ13373|VLIG1" very large inducible GTPase 1 "GVIN1|GVIN1P" "GTPase, very large interferon inducible 1|GTPase, very large interferon inducible 1, pseudogene" 2005-02-16 2010-09-28 2010-09-28 2014-03-18 387751 ENSG00000254838 OTTHUMG00000165506 BX538318 NR_003945 Q7Z2Y8 "12874213|19369598" 616121 PGOHUM00000242161 +HGNC:38876 GVINP2 GTPase, very large interferon inducible pseudogene 2 pseudogene pseudogene Approved 11p15.4 11p15.4 2010-10-21 2010-10-21 100128135 ENSG00000254781 OTTHUMG00000165734 XR_078437 19369598 +HGNC:31424 GVQW1 GVQW motif containing 1 protein-coding gene gene with protein product Approved 9p21.1 09p21.1 bA205M20.5 TIGD1L2 tigger transposable element derived 1-like 2 2010-05-12 2013-04-08 2013-04-08 2014-11-19 101362076 ENSG00000241043 OTTHUMG00000019744 uc064snb.1 AK098413 Q8N7I0 +HGNC:51715 GVQW2 GVQW motif containing 2 protein-coding gene gene with protein product Approved 6q24.1 06q24.1 2015-09-17 2015-09-17 2015-09-17 100507462 ENSG00000279968 OTTHUMG00000189248 NM_001242740 CCDS78187 A0A096LPI5 +HGNC:27482 GXYLT1 glucoside xylosyltransferase 1 protein-coding gene gene with protein product Approved 12q12 12q12 FLJ43151 GLT8D3 glycosyltransferase 8 domain containing 3 Glycosyltransferase family 8 436 2006-01-24 2009-11-17 2009-11-17 2015-08-25 283464 ENSG00000151233 OTTHUMG00000169379 uc001rms.5 BC015597 XM_290597 "CCDS41771|CCDS41772" Q4G148 19940119 MGI:2684933 RGD:1563062 GXYLT1 613321 +HGNC:39676 GXYLT1P1 glucoside xylosyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 13q11 13q11 2011-03-22 2011-03-22 100101111 ENSG00000230931 OTTHUMG00000016459 NG_006142 PGOHUM00000248288 +HGNC:39677 GXYLT1P2 glucoside xylosyltransferase 1 pseudogene 2 pseudogene pseudogene Approved 21q11.2 21q11.2 2011-03-22 2011-03-22 441958 ENSG00000224860 OTTHUMG00000074230 NG_006139 PGOHUM00000239025 +HGNC:50422 GXYLT1P3 glucoside xylosyltransferase 1 pseudogene 3 pseudogene pseudogene Approved 9p11.2 09p11.2 2014-04-25 2015-02-02 100132541 ENSG00000232433 OTTHUMG00000067497 NG_021650 PGOHUM00000304200 +HGNC:50423 GXYLT1P4 glucoside xylosyltransferase 1 pseudogene 4 pseudogene pseudogene Approved 9q21.11 09q21.11 2014-04-25 2015-02-02 100132441 ENSG00000275026 OTTHUMG00000188312 NG_021615 PGOHUM00000303906 +HGNC:50424 GXYLT1P5 glucoside xylosyltransferase 1 pseudogene 5 pseudogene pseudogene Approved 9p11.1 09p11.1 2014-04-25 2015-02-02 100131760 ENSG00000276591 OTTHUMG00000188571 NG_021619 PGOHUM00000304231 +HGNC:50425 GXYLT1P6 glucoside xylosyltransferase 1 pseudogene 6 pseudogene pseudogene Approved 9q13 09q13 2014-04-25 2016-10-05 100132672 ENSG00000235310 OTTHUMG00000013327 NG_021660 PGOHUM00000236617 +HGNC:33383 GXYLT2 glucoside xylosyltransferase 2 protein-coding gene gene with protein product Approved 3p13 03p13 GLT8D4 glycosyltransferase 8 domain containing 4 Glycosyltransferase family 8 436 2007-04-12 2009-11-17 2009-11-17 2015-08-25 727936 ENSG00000172986 OTTHUMG00000158815 uc003dpg.4 AC098481 NM_001080393 CCDS46870 A0PJZ3 19940119 MGI:2682940 RGD:1586482 GXYLT2 613322 +HGNC:4699 GYG1 glycogenin 1 protein-coding gene gene with protein product Approved 3q24 03q24 glycogenin glucosyltransferase GYG glycogenin Glycosyltransferase family 8 436 1997-07-22 2005-11-04 2005-11-04 2016-10-05 2992 ENSG00000163754 OTTHUMG00000159533 uc003ewo.4 AF087942 NM_004130 "CCDS3139|CCDS54654|CCDS54655" P46976 8602861 MGI:1351614 RGD:621785 GYG1 603942 269704 2.4.1.186 +HGNC:39712 GYG1P1 glycogenin 1 pseudogene 1 pseudogene pseudogene Approved 8q21.11 08q21.11 2011-03-23 2011-03-23 100132965 ENSG00000251633 OTTHUMG00000160472 NG_021230 PGOHUM00000249391 +HGNC:39710 GYG1P2 glycogenin 1 pseudogene 2 pseudogene pseudogene Approved 13q31.1 13q31.1 2011-03-23 2014-11-19 647317 ENSG00000237099 OTTHUMG00000017148 NG_021231 PGOHUM00000248649 +HGNC:39711 GYG1P3 glycogenin 1 pseudogene 3 pseudogene pseudogene Approved 1p32.3 01p32.3 2011-03-23 2014-11-19 645506 ENSG00000231095 OTTHUMG00000008215 NG_021229 PGOHUM00000244731 +HGNC:4700 GYG2 glycogenin 2 protein-coding gene gene with protein product Approved Xp22.33 Xp22.33 GN-2 glycogenin glucosyltransferase Glycosyltransferase family 8 436 1999-01-12 2016-10-05 8908 ENSG00000056998 OTTHUMG00000021079 uc004cqs.2 U94361 NM_003918 "CCDS14121|CCDS48074|CCDS55365" O15488 9857012 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=GYG2 GYG2 300198 2.4.1.186 +HGNC:40270 GYG2-AS1 GYG2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.33 Xp22.33 GYG2 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873938 ENSG00000235483 OTTHUMG00000021074 uc064xvg.1 +HGNC:4701 GYG2P1 glycogenin 2 pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 GYG2P glycogenin 2 pseudogene 1999-05-17 2010-03-19 2010-03-19 2010-07-02 352887 ENSG00000206159 OTTHUMG00000036382 NG_002811 10542153 GYG2P1 +HGNC:39713 GYG2P2 glycogenin 2 pseudogene 2 pseudogene pseudogene Approved 1q32.1 01q32.1 2011-03-23 2011-03-23 100418892 NG_027191 PGOHUM00000256886 +HGNC:4702 GYPA glycophorin A (MNS blood group) protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "GPA|MN|CD235a" MNS "glycophorin A (includes MN blood group)|glycophorin A (MN blood group)" "Blood group antigens|CD molecules" "454|471" 2001-06-22 2006-02-23 2016-10-12 2993 ENSG00000170180 OTTHUMG00000161403 uc003ijo.5 M36281 NM_002099 "CCDS34069|CCDS77965|CCDS82959" P02724 3456608 MGI:95880 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.cgi?cmd=bgmut/home|LRG_793|http://www.lrg-sequence.org/LRG/LRG_793" GYPA 111300 CD235a +HGNC:4703 GYPB glycophorin B (MNS blood group) protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "GPB|SS|CD235b" MNS "glycophorin B (includes Ss blood group)|glycophorin B (Ss blood group)" "Blood group antigens|CD molecules" "454|471" 1988-08-31 2006-02-23 2016-10-12 2994 ENSG00000250361 OTTHUMG00000161404 uc003ijm.2 NM_002100 CCDS54809 P06028 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_794|http://www.lrg-sequence.org/LRG/LRG_794" GYPB 111740 CD235b +HGNC:4704 GYPC glycophorin C (Gerbich blood group) protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "GPC|GYPD|Ge|CD236|CD236R" "Blood group antigens|CD molecules" "454|471" 2001-06-22 2016-10-12 2995 ENSG00000136732 OTTHUMG00000131464 uc002tnq.5 NM_002101 "CCDS2136|CCDS46402|CCDS58724" P04921 MGI:1098566 RGD:1310295 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_813|http://www.lrg-sequence.org/LRG/LRG_813" GYPC 110750 398416 CD236R +HGNC:4705 GYPE glycophorin E (MNS blood group) protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "GPE|MNS" glycophorin E Blood group antigens 454 1990-09-10 2010-01-19 2015-09-10 2996 ENSG00000197465 OTTHUMG00000161402 uc003ijj.4 NM_002102 CCDS47138 P15421 Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home GYPE 138590 +HGNC:4706 GYS1 glycogen synthase 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 GSY GYS glycogen synthase 1 (muscle) Glycosyl transferases group 1 domain containing 427 1992-08-25 2015-12-04 2016-10-05 2997 ENSG00000104812 OTTHUMG00000150723 uc002plp.4 NM_002103 "CCDS12747|CCDS54292" P13807 MGI:101805 RGD:1589798 GYS1 138570 160283 2.4.1.11 +HGNC:4707 GYS2 glycogen synthase 2 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 glycogen synthase 2 (liver) Glycosyl transferases group 1 domain containing 427 1993-09-24 2015-12-04 2016-10-05 2998 ENSG00000111713 OTTHUMG00000169135 uc001rfb.3 NM_021957 CCDS8690 P54840 MGI:2385254 RGD:2773 GYS2 138571 122354 2.4.1.11 +HGNC:15808 GZF1 GDNF inducible zinc finger protein 1 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "dJ322G13.2|ZBTB23" ZNF336 zinc finger protein 336 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2001-09-17 2006-09-19 2016-02-12 2016-02-12 64412 ENSG00000125812 OTTHUMG00000032069 uc002wsy.4 AK025447 NM_022482 CCDS13151 Q9H116 "14522971|16049025" MGI:1921783 RGD:1562321 GZF1 613842 362 +HGNC:4708 GZMA granzyme A protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "CTL tryptase|Cytotoxic T-lymphocyte-associated serine esterase-3|Hanukah factor serine protease)|granzyme 1" "HFSP|CTLA3" granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) 1988-05-31 2015-11-16 2016-10-05 3001 ENSG00000145649 OTTHUMG00000097011 uc003jpm.4 NM_006144 CCDS3965 P12544 "3262682|3533635" MGI:109266 RGD:628640 GZMA 140050 S01.135 objectId:2368 +HGNC:44137 GZMAP1 granzyme A pseudogene 1 pseudogene pseudogene Approved 5q11.2 05q11.2 granzyme A (granzyme 1, cytotoxic T-lymphocyte-associated serine esterase 3) pseudogene 1 2012-06-29 2015-11-16 2015-11-16 106479035 ENSG00000249454 OTTHUMG00000162199 NG_044381 PGOHUM00000235592 +HGNC:4709 GZMB granzyme B protein-coding gene gene with protein product Approved 14q12 14q12 "CCPI|CGL-1|CSP-B|CGL1|CTSGL1|HLP|SECT" "fragmentin 2|cytotoxic serine protease B|cathepsin G-like 1|T-cell serine protease 1-3E|granzyme 2|cytotoxic T-lymphocyte-associated serine esterase 1" "CTLA1|CSPB" granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1) 1989-05-12 2015-11-16 2016-10-05 3002 ENSG00000100453 OTTHUMG00000029369 uc001wps.4 BC030195 NM_004131 CCDS9633 P10144 2323780 MGI:109265 RGD:620018 GZMB 123910 S01.010 objectId:2369 +HGNC:4710 GZMH granzyme H protein-coding gene gene with protein product Approved 14q12 14q12 "CGL-2|CCP-X|CTLA1|CSP-C" cathepsin G-like 2, protein h-CCPX CTSGL2 granzyme H (cathepsin G-like 2, protein h-CCPX) 1990-04-09 2015-11-16 2016-10-05 2999 ENSG00000100450 OTTHUMG00000140185 uc001wpr.3 M72150 NM_033423 "CCDS9632|CCDS59243" P20718 2049336 "MGI:109253|MGI:109254|MGI:109255|MGI:109265" GZMH 116831 S01.147 +HGNC:4711 GZMK granzyme K protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "TRYP2|PRSS" tryptase II "granzyme K (serine protease, granzyme 3; tryptase II)|granzyme K (granzyme 3; tryptase II)" 1995-08-31 2015-11-16 2015-11-16 3003 ENSG00000113088 OTTHUMG00000097009 uc003jpl.2 BC035802 NM_002104 CCDS3964 P49863 7758581 MGI:1298232 RGD:68401 GZMK 600784 S01.146 objectId:2370 +HGNC:4712 GZMM granzyme M protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MET1|LMET1" lymphocyte met-ase 1 granzyme M (lymphocyte met-ase 1) 1994-10-12 2015-11-16 2015-11-16 3004 ENSG00000197540 OTTHUMG00000180559 uc002low.4 NM_005317 "CCDS12031|CCDS74240" P51124 8119738 MGI:99549 RGD:620022 GZMM 600311 S01.139 +HGNC:4714 H1F0 H1 histone family member 0 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 H10 H1.0, H1(0), H1-0 H1FV H1 histone family, member 0 Histones 864 1988-07-20 2015-11-18 2015-11-18 3005 ENSG00000189060 OTTHUMG00000150659 uc003aty.4 X03473 NM_005318 CCDS13956 P07305 3084796 MGI:95893 RGD:2777 H1F0 142708 +HGNC:24893 H1FNT H1 histone family member N, testis specific protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "HANP1|H1T2" H1 histone family, member N, testis-specific Histones 864 2006-02-28 2015-11-18 2015-11-18 341567 ENSG00000187166 OTTHUMG00000169904 uc001rrm.3 AY302593 NM_181788 CCDS8762 Q75WM6 15710904 MGI:1917319 RGD:1560024 H1FNT +HGNC:18463 H1FOO H1 histone family member O, oocyte specific protein-coding gene gene with protein product Approved 3q22.1 03q22.1 H1 histone family, member O, oocyte-specific Histones 864 2003-05-23 2015-11-18 2016-10-05 132243 ENSG00000178804 OTTHUMG00000159541 uc003emu.3 AY158091 NM_153833 "CCDS3064|CCDS77815" Q8IZA3 12408966 MGI:2176207 RGD:1566236 H1FOO +HGNC:4722 H1FX H1 histone family member X protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "MGC15959|MGC8350|H1X" H1 histone family, member X Histones 864 1999-06-11 2015-11-18 2015-11-18 8971 ENSG00000184897 OTTHUMG00000159450 uc003elx.3 D64142 NM_006026 CCDS3057 Q92522 "8964515|9439656" MGI:2685307 RGD:1565596 H1FX 602785 +HGNC:27953 H1FX-AS1 H1FX antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 FLJ34151 C3orf47 "chromosome 3 open reading frame 47|H1FX antisense RNA 1 (non-protein coding)" 2006-01-16 2011-08-16 2012-08-15 2012-10-12 339942 ENSG00000206417 OTTHUMG00000159459 uc062nqu.1 AK091470 NR_026991 Q4G0G2 14702039 +HGNC:22516 H2AFB1 H2A histone family member B1 protein-coding gene gene with protein product Approved Xq28 Xq28 H2A histone family, member B1 Histones 864 2004-10-29 2015-11-18 2015-11-18 474382 ENSG00000274183 OTTHUMG00000034291 uc004fmu.5 NM_001017990 CCDS35458 P0C5Y9 "MGI:3642445|MGI:3644875|MGI:3644980" H2AFB1 +HGNC:18298 H2AFB2 H2A histone family member B2 protein-coding gene gene with protein product Approved Xq28 Xq28 H2A histone family, member B2 Histones 864 2004-10-29 2015-11-18 2015-11-18 474381 ENSG00000277858 OTTHUMG00000034292 uc004fnh.5 NM_001017991 CCDS35461 P0C5Z0 "MGI:3642445|MGI:3644875|MGI:3644980" RGD:1561666 H2AFB2 +HGNC:14455 H2AFB3 H2A histone family member B3 protein-coding gene gene with protein product Approved Xq28 Xq28 H2AFB "H2A histone family, member B|H2A histone family, member B3" Histones 864 2001-04-27 2004-11-02 2015-11-18 2015-11-18 83740 ENSG00000277745 OTTHUMG00000022670 uc004fnk.5 AF254576 NM_080720 CCDS35464 P0C5Z0 "MGI:3642445|MGI:3644875|MGI:3644980" H2AFB3 300445 +HGNC:14456 H2AFJ H2A histone family member J protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "FLJ10903|MGC921" H2A histone family, member J Histones 864 2001-04-27 2015-11-18 2015-11-18 55766 ENSG00000246705 OTTHUMG00000168736 uc009zia.4 AK001765 NM_177925 CCDS31752 Q9BTM1 MGI:3606192 RGD:1592176 H2AFJ +HGNC:20664 H2AFV H2A histone family member V protein-coding gene gene with protein product Approved 7p13 07p13 "MGC10170|MGC10831|MGC1947" H2AV H2A histone family, member V Histones 864 2004-01-16 2004-03-26 2015-11-18 2015-11-18 94239 ENSG00000105968 OTTHUMG00000129217 uc003tma.3 AF081192 NM_012412 "CCDS5495|CCDS5496|CCDS5497|CCDS5498|CCDS47581" Q71UI9 MGI:1924855 RGD:1587865 H2AFV +HGNC:31026 H2AFVP1 H2A histone family member V pseudogene 1 pseudogene pseudogene Approved 15q26.1 15q26.1 HsT19970 H2AFVP "H2A histone family, member V, pseudogene|H2A histone family, member V, pseudogene 1" Histones 864 2006-01-17 2010-03-19 2015-11-12 2015-11-12 654500 AC091544 NG_009543 PGOHUM00000246930 +HGNC:4739 H2AFX H2A histone family member X protein-coding gene gene with protein product Approved 11q23.3 11q23.3 H2AX H2A histone family, member X Histones 864 1994-11-22 2015-11-18 2015-11-18 3014 ENSG00000188486 OTTHUMG00000166196 uc001pvg.4 X14850 NM_002105 CCDS8410 P16104 8076949 MGI:102688 RGD:1566119 H2AFX 601772 +HGNC:4740 H2AFY H2A histone family member Y protein-coding gene gene with protein product Approved 5q31.1 05q31.1 macroH2A1.2 H2A histone family, member Y Histones 864 1999-07-22 2015-11-18 2015-11-18 9555 ENSG00000113648 OTTHUMG00000129141 uc003lam.2 AF054174 NM_004893 "CCDS4183|CCDS4184|CCDS4185" O75367 "9653160|9714746" MGI:1349392 RGD:621462 H2AFY 610054 +HGNC:14453 H2AFY2 H2A histone family member Y2 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 macroH2A2 H2A histone family, member Y2 Histones 864 2001-04-27 2015-11-18 2015-11-18 55506 ENSG00000099284 OTTHUMG00000018396 uc001jqm.4 AF336304 NM_018649 CCDS7296 Q9P0M6 "11331621|11262398" MGI:3037658 RGD:1561371 H2AFY2 616141 +HGNC:4741 H2AFZ H2A histone family member Z protein-coding gene gene with protein product Approved 4q23 04q23 H2A.Z H2AZ H2A histone family, member Z Histones 864 1993-10-28 2015-11-18 2015-11-18 3015 ENSG00000164032 OTTHUMG00000131048 uc003hvo.2 X52317 NM_002106 CCDS3654 P0C0S5 1697587 MGI:1888388 RGD:621464 H2AFZ 142763 +HGNC:4742 H2AFZP1 H2A histone family member Z pseudogene 1 pseudogene pseudogene Approved 21q22.3 21q22.3 H2AFZP "H2A histone family, member Z, pseudogene|H2A histone family, member Z pseudogene 1" Histones 864 2000-05-23 2009-11-25 2015-11-18 2015-11-18 54049 ENSG00000213440 OTTHUMG00000086895 U61521 NG_000922 PGOHUM00000239090 +HGNC:32279 H2AFZP2 H2A histone family member Z pseudogene 2 pseudogene pseudogene Approved 8q13.3 08q13.3 H2A histone family, member Z pseudogene 2 Histones 864 2005-09-22 2015-11-18 2015-11-18 346990 NG_005179 H2AFZP2 PGOHUM00000249380 +HGNC:38013 H2AFZP3 H2A histone family member Z pseudogene 3 pseudogene pseudogene Approved 13q32.3 13q32.3 H2A histone family, member Z pseudogene 3 Histones 864 2010-03-19 2015-11-18 2015-11-18 728023 ENSG00000218502 OTTHUMG00000017262 NG_011430 PGOHUM00000248478 +HGNC:38015 H2AFZP4 H2A histone family member Z pseudogene 4 pseudogene pseudogene Approved 11q13.3 11q13.3 H2A histone family, member Z pseudogene 4 Histones 864 2010-03-19 2015-11-18 2015-11-18 100462795 ENSG00000255329 OTTHUMG00000167302 NG_021792 PGOHUM00000242349 +HGNC:38018 H2AFZP5 H2A histone family member Z pseudogene 5 pseudogene pseudogene Approved 10q22.3 10q22.3 H2A histone family, member Z pseudogene 5 Histones 864 2010-03-19 2015-11-18 2015-11-18 100288330 ENSG00000234612 OTTHUMG00000018546 NG_022973 PGOHUM00000238850 +HGNC:38019 H2AFZP6 H2A histone family member Z pseudogene 6 pseudogene pseudogene Approved 22q12.2 22q12.2 H2A histone family, member Z pseudogene 6 Histones 864 2010-03-19 2015-11-18 2015-11-18 100462800 ENSG00000233733 OTTHUMG00000030795 NG_022870 PGOHUM00000246310 +HGNC:27867 H2BFM H2B histone family member M protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 H2B histone family, member M Histones 864 2005-12-22 2015-11-18 2015-11-18 286436 ENSG00000101812 OTTHUMG00000022122 uc004els.2 AK093522 XM_210048 CCDS55468 P0C1H6 MGI:1916639 H2BFM +HGNC:4762 H2BFS H2B histone family member S other unknown Approved 21q22.3 21q22.3 "H2B histone family, member S|H2B histone family, member S (pseudogene)|H2B histone family member S (pseudogene)" Histones 864 2000-05-16 2016-07-19 2016-07-19 54145 ENSG00000234289 OTTHUMG00000086869 uc002zdj.2 NG_006504 P57053 RGD:6499934 PGOHUM00000239182 +HGNC:27252 H2BFWT H2B histone family member W, testis specific protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 H2B histone family, member W, testis-specific Histones 864 2004-05-17 2015-11-18 2015-11-18 158983 ENSG00000123569 OTTHUMG00000022120 uc004elr.4 BC038109 NM_001002916 CCDS35362 Q7Z2G1 12477932 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=H2BFWT H2BFWT 300507 +HGNC:25757 H2BFXP H2B histone family member X, pseudogene pseudogene pseudogene Approved Xq22.2 Xq22.2 H2B histone family, member X, pseudogene Histones 864 2006-09-25 2015-11-18 2015-11-18 767811 AY730279 NR_003238 PGOHUM00000305234 +HGNC:4764 H3F3A H3 histone family member 3A protein-coding gene gene with protein product Approved 1q42.12 01q42.12 H3.3A H3F3 H3 histone, family 3A Histones 864 1989-12-11 2016-08-12 2016-08-12 3020 ENSG00000163041 OTTHUMG00000037507 uc057pya.1 BC029405 NM_002107 CCDS1550 P84243 3031613 MGI:1097686 RGD:2319910 H3F3A 601128 +HGNC:31028 H3F3AP1 H3 histone family member 3A pseudogene 1 pseudogene pseudogene Approved 15q15.1 15q15.1 HsT18159 H3 histone, family 3A, pseudogene 1 Histones 864 2006-01-17 2016-08-15 2016-08-15 654505 ENSG00000259389 OTTHUMG00000172418 AC025168 NG_006444 PGOHUM00000246752 +HGNC:19823 H3F3AP2 H3 histone family member 3A pseudogene 2 pseudogene pseudogene Approved 14q11.2 14q11.2 H3F3CP H3 histone, family 3A, pseudogene 2 Histones 864 2006-02-24 2016-08-15 2016-08-15 664611 AL049829 NG_006445 +HGNC:42873 H3F3AP3 H3 histone family member 3A pseudogene 3 pseudogene pseudogene Approved 3q13.13 03q13.13 p18 H3 histone, family 3A pseudogene 3 2011-09-13 2016-08-15 2016-08-15 100689229 ENSG00000230618 OTTHUMG00000159215 NG_029983 21782046 PGOHUM00000250252 +HGNC:42980 H3F3AP4 H3 histone, family 3A, pseudogene 4 pseudogene pseudogene Approved 2q31.1 02q31.1 p13 2011-09-13 2012-03-08 440926 ENSG00000235655 OTTHUMG00000154155 NR_002315 21782046 +HGNC:42981 H3F3AP5 H3 histone, family 3A, pseudogene 5 pseudogene pseudogene Approved Xp11.22 Xp11.22 2011-09-13 2011-09-13 347376 ENSG00000226881 OTTHUMG00000021523 NG_029840 PGOHUM00000241754 +HGNC:42982 H3F3AP6 H3 histone, family 3A, pseudogene 6 pseudogene pseudogene Approved 4q31.1 04q31.1 p21 2011-09-13 2012-03-08 644914 ENSG00000178458 OTTHUMG00000161274 NG_022939 21782046 +HGNC:4765 H3F3B H3 histone family member 3B protein-coding gene gene with protein product Approved 17q25.1 17q25.1 H3.3B "H3 histone, family 3B (H3.3B)|H3 histone, family 3B" Histones 864 1995-10-02 2016-08-12 2016-08-12 3021 ENSG00000132475 OTTHUMG00000179842 uc060kcj.1 Z48950 NM_005324 CCDS11729 P84243 8586426 MGI:1101768 RGD:621095 H3F3B 601058 +HGNC:42030 H3F3BP1 H3 histone, family 3B pseudogene 1 pseudogene pseudogene Approved 13q21.33 13q21.33 H3 histone, family 3B (H3.3B) pseudogene 1 2011-08-15 2016-06-30 2016-06-30 100287087 ENSG00000236534 OTTHUMG00000017061 NG_029804 PGOHUM00000248627 +HGNC:42979 H3F3BP2 H3 histone, family 3B pseudogene 2 pseudogene pseudogene Approved 17q11.2 17q11.2 H3 histone, family 3B (H3.3B) pseudogene 2 2011-09-13 2016-06-30 2016-06-30 100420410 ENSG00000265541 OTTHUMG00000179306 NG_026234 PGOHUM00000263433 +HGNC:33164 H3F3C H3 histone family member 3C protein-coding gene gene with protein product Approved 12p11.21 12p11.21 H3.5 H3 histone, family 3C Histones 864 2009-08-13 2016-08-12 2016-08-12 440093 ENSG00000188375 OTTHUMG00000157811 uc001rkr.3 BC066906 NM_001013699 CCDS31769 Q6NXT2 21274551 MGI:3651714 RGD:2323872 H3F3C 616134 +HGNC:4780 H4F3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:4795 H6PD hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase protein-coding gene gene with protein product Approved 1p36.22 01p36.22 GDH/6PGL endoplasmic bifunctional protein GDH "glucose dehyrogenase|hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)" 1999-11-26 2016-04-05 2016-10-05 9563 ENSG00000049239 OTTHUMG00000001768 uc001apt.4 AJ012590 NM_004285 "CCDS101|CCDS72697" O95479 10349511 MGI:2140356 RGD:1306562 H6PD 138090 173203 1.1.1.47 +HGNC:4713 H19 H19, imprinted maternally expressed transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 "D11S813E|ASM|ASM1|NCRNA00008|LINC00008" "non-protein coding RNA 8|long intergenic non-protein coding RNA 8" H19, imprinted maternally expressed untranslated mRNA Long non-coding RNAs 788 1999-04-15 2008-06-04 2016-10-12 283120 ENSG00000130600 OTTHUMG00000012477 uc057xvv.1 AF087017 NR_002196 "2595451|1688465" LRG_1030|http://www.lrg-sequence.org/LRG/LRG_1030 H19 103280 123340 H19 +HGNC:4796 HAAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding gene gene with protein product Approved 2p21 02p21 1999-12-14 2016-10-05 23498 ENSG00000162882 OTTHUMG00000152348 uc002rst.5 Z29481 XM_011532729 CCDS33187 P46952 7514594 MGI:1349444 RGD:71071 HAAO 604521 1.13.11.6 +HGNC:4798 HABP2 hyaluronan binding protein 2 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "HABP|PHBP|HGFAL|FSAP" "plasma hyaluronan binding protein|factor VII activating protein" hyaluronan-binding protein 2 1996-11-15 2001-11-28 2014-11-19 3026 ENSG00000148702 OTTHUMG00000019073 uc001lai.5 NM_004132 "CCDS7577|CCDS53579" Q14520 "8827452|12437095" MGI:1196378 RGD:1302979 HABP2 603924 437465 S01.033 +HGNC:17062 HABP4 hyaluronan binding protein 4 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 "IHABP4|SERBP1L" 2002-06-11 2016-10-05 22927 ENSG00000130956 OTTHUMG00000020298 uc010msg.5 AF241831 NM_014282 CCDS6719 Q5JVS0 "9523163|10887182" MGI:1891713 RGD:1306486 HABP4 +HGNC:9639 HACD1 3-hydroxyacyl-CoA dehydratase 1 protein-coding gene gene with protein product Approved 10p12.33 10p12.33 CAP "cementum attachment protein|Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1" PTPLA "protein tyrosine phosphatase-like (proline instead of catalytic arginine), member a|protein tyrosine phosphatase-like (proline instead of catalytic arginine), member A" 1999-01-22 2015-01-27 2015-01-27 2016-01-15 9200 ENSG00000165996 OTTHUMG00000017750 AF114494 NM_014241 CCDS7121 B0YJ81 "10644438|18554506|23933735" MGI:1353592 RGD:1595507 610467 377040 4.2.1.134 +HGNC:9640 HACD2 3-hydroxyacyl-CoA dehydratase 2 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 2 PTPLB protein tyrosine phosphatase-like (proline instead of catalytic arginine), member b 1999-01-22 2015-01-27 2015-01-27 2016-01-15 201562 ENSG00000206527 OTTHUMG00000159529 AK074605 NM_198402 CCDS46895 Q6Y1H2 "15024066|18554506" MGI:1918007 RGD:1306337 615939 4.2.1.134 +HGNC:24175 HACD3 3-hydroxyacyl-CoA dehydratase 3 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "B-ind1|HSPC121" Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 PTPLAD1 protein tyrosine phosphatase-like A domain containing 1 2005-11-11 2015-01-27 2015-01-27 2016-01-15 51495 ENSG00000074696 OTTHUMG00000172658 NM_016395 CCDS45282 Q9P035 "10747961|11042152|18554506" MGI:1889341 RGD:1565496 615940 4.2.1.134 +HGNC:20920 HACD4 3-hydroxyacyl-CoA dehydratase 4 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "Em:AL662879.1|OTTHUMG00000021016" Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 PTPLAD2 protein tyrosine phosphatase-like A domain containing 2 2005-11-11 2015-01-27 2015-01-27 2016-01-15 401494 ENSG00000188921 OTTHUMG00000021016 NM_001010915 CCDS43791 Q5VWC8 18554506 MGI:1914025 RGD:1310339 615941 4.2.1.134 +HGNC:21033 HACE1 HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 6q16.3 06q16.3 KIAA1320 Ankyrin repeat domain containing 403 2003-05-07 2012-02-23 2016-10-05 57531 ENSG00000085382 OTTHUMG00000015287 uc003pqu.1 BC034982 XM_045095 CCDS5050 Q8IYU2 10718198 MGI:2446110 RGD:1306114 HACE1 610876 315421 +HGNC:17856 HACL1 2-hydroxyacyl-CoA lyase 1 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "2-HPCL|PHYH2" HPCL 2-hydroxyphytanoyl-CoA lyase 2006-01-09 2006-05-16 2006-05-16 2016-10-05 26061 ENSG00000131373 OTTHUMG00000129862 uc062hdf.1 AJ131753 NM_012260 "CCDS2627|CCDS68360|CCDS68361|CCDS68362" Q9UJ83 "10468558|15644336" MGI:1929657 RGD:619849 HACL1 604300 4.1.-.- +HGNC:4799 HADH hydroxyacyl-CoA dehydrogenase protein-coding gene gene with protein product Approved 4q25 04q25 "HADH1|SCHAD" HADHSC "L-3-hydroxyacyl-Coenzyme A dehydrogenase, short chain|hydroxyacyl-Coenzyme A dehydrogenase" 2001-06-22 2010-04-30 2016-10-05 3033 ENSG00000138796 OTTHUMG00000131810 uc003hyq.4 X96752 NM_005327 "CCDS3678|CCDS54790|CCDS82943" Q16836 "975867|16176262" MGI:96009 RGD:69321 HADH 601609 122356 1.1.1.35 +HGNC:4801 HADHA hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "GBP|LCEH|LCHAD|MTPA" "gastrin-binding protein|long-chain-3-hydroxyacyl-CoA dehydrogenase|long-chain 2-enoyl-CoA hydratase|mitochondrial trifunctional protein, alpha subunit" hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit 1994-12-16 2010-04-30 2016-10-12 3030 ENSG00000084754 OTTHUMG00000096979 uc002rgy.3 D16480 NM_000182 CCDS1721 P40939 "9605857|7918661" MGI:2135593 RGD:620512 LRG_747|http://www.lrg-sequence.org/LRG/LRG_747 HADHA 600890 138233 "1.1.1.211|4.2.1.17" +HGNC:4802 HADHAP1 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit pseudogene 1 pseudogene pseudogene Approved 4q32.3 04q32.3 HADHAP "hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase pseudogene (gastrin binding protein pseudogene)|hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase pseudogene (gastrin binding protein pseudogene)" 1994-12-16 2010-03-19 2010-06-21 2016-10-05 3031 ENSG00000251596 OTTHUMG00000161127 U04628 NG_000863 7918661 PGOHUM00000245761 +HGNC:38585 HADHAP2 hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), alpha subunit pseudogene 2 pseudogene pseudogene Approved 12p13.31 12p13.31 2010-06-21 2016-09-26 399994 ENSG00000255967 OTTHUMG00000168721 NG_005587 PGOHUM00000291530 +HGNC:4803 HADHB hydroxyacyl-CoA dehydrogenase/3-ketoacyl-CoA thiolase/enoyl-CoA hydratase (trifunctional protein), beta subunit protein-coding gene gene with protein product Approved 2p23.3 02p23.3 MTPB mitochondrial trifunctional protein, beta subunit hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit 1994-12-16 2010-04-30 2016-10-05 3032 ENSG00000138029 OTTHUMG00000096978 uc002rgz.4 NM_000183 "CCDS1722|CCDS62871|CCDS62872" P55084 9605857 MGI:2136381 RGD:620513 HADHB 143450 138829 2.3.1.16 +HGNC:4805 HAGH hydroxyacylglutathione hydrolase protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "GLO2|GLXII|HAGH1" hydroxyacyl glutathione hydrolase 2001-06-22 2003-11-04 2015-08-25 3029 ENSG00000063854 OTTHUMG00000128662 uc002cna.4 X90999 NM_005326 "CCDS32366|CCDS10447|CCDS66900" Q16775 "3025077|7327557" MGI:95745 RGD:2779 HAGH 138760 3.1.2.6 +HGNC:14177 HAGHL hydroxyacylglutathione hydrolase-like protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC2605 hydroxyacyl glutathione hydrolase-like 2000-12-21 2003-11-04 2015-08-25 84264 ENSG00000103253 OTTHUMG00000170560 uc002cjo.2 AK054841 NM_032304 CCDS32354 Q6PII5 12477932 MGI:1919877 RGD:1308042 HAGHL +HGNC:43755 HAGLR HOXD antisense growth-associated long non-coding RNA non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 Mdgt HOXD-AS1 "HOXD cluster antisense RNA 1 (non-protein coding)|HOXD cluster antisense RNA 1" Long non-coding RNAs 788 2012-02-18 2014-05-20 2014-05-20 2014-07-18 401022 ENSG00000224189 OTTHUMG00000154172 BC030713 NR_033979 "24381249|24555823" +HGNC:50646 HAGLROS HAGLR opposite strand (non-protein coding) non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 2014-06-12 2014-10-10 102800310 ENSG00000226363 OTTHUMG00000154176 "BE798911|AA780126" NR_110457 +HGNC:4806 HAL histidine ammonia-lyase protein-coding gene gene with protein product Approved 12q23.1 12q23.1 HIS 1988-08-31 2016-01-15 3034 ENSG00000084110 OTTHUMG00000170354 uc001tem.2 XM_011538249 "CCDS9058|CCDS58264|CCDS58265" P42357 MGI:96010 RGD:68363 HAL 609457 122361 4.3.1.3 +HGNC:15598 HAMP hepcidin antimicrobial peptide protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "LEAP-1|HEPC|HFE2B|LEAP1" 2001-05-29 2016-10-12 57817 ENSG00000105697 OTTHUMG00000183295 uc002nyw.4 AF309489 NM_021175 CCDS12454 P81172 "11034317|11113132" MGI:1933533 RGD:70971 LRG_791|http://www.lrg-sequence.org/LRG/LRG_791 HAMP 606464 122364 +HGNC:4807 HAND1 heart and neural crest derivatives expressed 1 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 "eHand|Thing1|Hxt|bHLHa27" Basic helix-loop-helix proteins 420 1999-05-17 2016-10-05 9421 ENSG00000113196 OTTHUMG00000130193 uc003lvn.3 AF061756 NM_004821 CCDS4327 O96004 "9337404|9931445" MGI:103577 RGD:621206 HAND1 602406 +HGNC:4808 HAND2 heart and neural crest derivatives expressed 2 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 "dHand|Thing2|Hed|bHLHa26" Basic helix-loop-helix proteins 420 1999-05-17 2015-08-25 9464 ENSG00000164107 OTTHUMG00000160775 uc003ith.2 AF087941 NM_021973 CCDS3819 P61296 9878849 MGI:103580 RGD:621207 HAND2 602407 +HGNC:48872 HAND2-AS1 HAND2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4q34.1 04q34.1 "DEIN|NBLA00301|FLJ11539" "neuroblastoma transcript 301|differentially expressed in neuroblastoma" 2013-07-11 2013-07-16 79804 ENSG00000237125 OTTHUMG00000160783 NR_136198 "18171985|19348682" +HGNC:4809 HAO1 hydroxyacid oxidase 1 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 GOX glycolate oxidase 1 GOX1 hydroxyacid oxidase (glycolate oxidase) 1 1999-09-09 2016-03-17 2016-10-05 54363 ENSG00000101323 OTTHUMG00000031841 uc002wmw.2 AL021879 NM_017545 CCDS13100 Q9UJM8 9891009 MGI:96011 RGD:1589750 HAO1 605023 1.1.3.15 +HGNC:4810 HAO2 hydroxyacid oxidase 2 protein-coding gene gene with protein product Approved 1p12 01p12 "HAOX2|GIG16" "(S)-2-hydroxy-acid oxidase|glycolate oxidase|long-chain L-2-hydroxy acid oxidase|growth-inhibiting protein 16" hydroxyacid oxidase 2 (long chain) 2000-07-31 2016-03-17 2016-03-17 51179 ENSG00000116882 OTTHUMG00000012410 uc001ehq.1 AF231917 NM_001005783 "CCDS901|CCDS76196" Q9NYQ3 10777549 MGI:96012 RGD:70972 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=HAO2 HAO2 605176 1.1.3.15 +HGNC:41342 HAO2-IT1 HAO2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p12 01p12 HAO2 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874270 ENSG00000230921 OTTHUMG00000012520 uc031unr.2 NR_046780 +HGNC:4811 HAO3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13314 HAOL entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4812 HAP1 huntingtin associated protein 1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "HLP|hHLP1|HIP5" neuroan 1 HAP2 huntingtin-associated protein 1 1999-04-28 2016-06-30 2016-10-05 9001 ENSG00000173805 OTTHUMG00000133498 uc002hxn.2 AF040723 NM_003949 "CCDS11406|CCDS42338|CCDS42339" P54257 "7477378|9668110" MGI:1261831 RGD:68327 HAP1 600947 +HGNC:2380 HAPLN1 hyaluronan and proteoglycan link protein 1 protein-coding gene gene with protein product Approved 5q14.3 05q14.3 "Cartilage link protein|hyaluronan and proteoglycan link protein 1" CRTL1 cartilage linking protein 1 V-set domain containing 590 1990-03-14 2004-03-17 2004-03-16 2014-11-19 1404 ENSG00000145681 OTTHUMG00000119045 uc003kin.4 NM_001884 CCDS4061 P10915 "2286376|2320422" MGI:1337006 RGD:2412 HAPLN1 115435 +HGNC:17410 HAPLN2 hyaluronan and proteoglycan link protein 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 BRAL1 brain link protein 1 V-set domain containing 590 2004-03-11 2014-11-19 60484 ENSG00000132702 OTTHUMG00000033205 uc001fpn.1 AB049054 NM_021817 CCDS1148 Q9GZV7 "11027579|11873941" MGI:2137300 RGD:621854 HAPLN2 +HGNC:21446 HAPLN3 hyaluronan and proteoglycan link protein 3 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 HsT19883 EXLD1 extracellular link domain containing, 1 V-set domain containing 590 2004-03-11 2014-11-19 145864 ENSG00000140511 OTTHUMG00000148680 uc002bnc.4 AY262759 NM_178232 "CCDS10346|CCDS76790" Q96S86 12663660 MGI:1914916 RGD:1308098 HAPLN3 +HGNC:31357 HAPLN4 hyaluronan and proteoglycan link protein 4 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "BRAL2|KIAA1926" brain link protein 2 V-set domain containing 590 2004-03-11 2016-10-06 404037 ENSG00000187664 OTTHUMG00000182221 uc002nmb.5 AB107883 NM_023002 CCDS12398 Q86UW8 12663660 MGI:2679531 RGD:1308408 HAPLN4 +HGNC:4815 HAPP entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:33117 HAR1A highly accelerated region 1A (non-protein coding) non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 "HAR1F|NCRNA00064|LINC00064" "human accelerated region 1, forward|non-protein coding RNA 64|long intergenic non-protein coding RNA 64" highly accelerated region 1A (non-protein-coding RNA) Long non-coding RNAs 788 2006-10-03 2008-06-04 2014-11-18 768096 ENSG00000225978 OTTHUMG00000140136 uc002yef.2 "DQ860409|BC035016|BC047717" NR_003244 16915236 610556 HAR1A +HGNC:33118 HAR1B highly accelerated region 1B (non-protein coding) non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 "HAR1R|NCRNA00065|LINC00065" "human accelerated region 1, reverse|non-protein coding RNA 65|long intergenic non-protein coding RNA 65" highly accelerated region 1B (non-protein-coding RNA) Long non-coding RNAs 788 2006-10-03 2008-06-04 2014-10-22 768097 ENSG00000231133 OTTHUMG00000140135 uc031run.1 "DQ860410|DQ860411" NR_003245 16915236 610557 HAR1B +HGNC:26522 HARBI1 harbinger transposase derived 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 FLJ32675 C11orf77 chromosome 11 open reading frame 77 2006-05-10 2008-07-01 2008-07-01 2014-11-19 283254 ENSG00000180423 OTTHUMG00000166537 uc001ncy.4 AK057237 NM_173811 CCDS7920 Q96MB7 "15169610|18339812" MGI:2443194 RGD:1584007 HARBI1 615086 +HGNC:4816 HARS histidyl-tRNA synthetase protein-coding gene gene with protein product Approved 5q31.3 05q31.3 histidine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class II 132 2001-06-22 2015-09-11 3035 ENSG00000170445 OTTHUMG00000129502 uc003lgv.6 AK000498 NM_002109 "CCDS4237|CCDS58976|CCDS58977|CCDS58978|CCDS75323|CCDS75324" P12081 MGI:108087 RGD:1310695 HARS 142810 303807 6.1.1.21 +HGNC:4817 HARS2 histidyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "HO3|HARSR" histidine tRNA ligase 2, mitochondrial (putative) HARSL histidyl-tRNA synthetase-like Aminoacyl tRNA synthetases, Class II 132 2000-03-29 2007-02-23 2016-03-14 2016-03-14 23438 ENSG00000112855 OTTHUMG00000129500 uc003lgx.5 U18937 NM_012208 "CCDS4238|CCDS64267" P49590 "7755634|21464306" MGI:1918041 RGD:1308426 HARS2 600783 268052 6.1.1.21 +HGNC:4818 HAS1 hyaluronan synthase 1 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 HAS Glycosyltransferase family 2 428 1996-04-12 2016-10-05 3036 ENSG00000105509 OTTHUMG00000183499 uc002pxo.1 U59269 NM_001523 "CCDS12838|CCDS74436" Q92839 9169154 MGI:106590 RGD:708528 HAS1 601463 2.4.1.212 +HGNC:4819 HAS2 hyaluronan synthase 2 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 Glycosyltransferase family 2 428 1996-10-18 2016-10-05 3037 ENSG00000170961 OTTHUMG00000164953 uc003yph.3 U54804 NM_005328 CCDS6335 Q92819 9169154 MGI:107821 RGD:2781 HAS2 601636 2.4.1.212 +HGNC:34340 HAS2-AS1 HAS2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 "HASNT|NCRNA00077" non-protein coding RNA 77 "HAS2AS|HAS2-AS" "hyaluronan synthase 2 antisense|HAS2 antisense RNA (non-protein coding)|HAS2 antisense RNA 1 (non-protein coding)" 2008-06-20 2010-11-25 2012-08-15 2012-10-12 594842 ENSG00000248690 OTTHUMG00000164965 uc022baf.2 AY941178 NR_002835 614353 +HGNC:4820 HAS3 hyaluronan synthase 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 Glycosyltransferase family 2 428 1996-10-18 2015-09-11 3038 ENSG00000103044 OTTHUMG00000137562 uc002ewl.4 BC021853 NM_138612 "CCDS10870|CCDS10871" O00219 "9169154|9083017" MGI:109599 RGD:628656 HAS3 602428 2.4.1.212 +HGNC:4821 HAT1 histone acetyltransferase 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 KAT1 Lysine acetyltransferases 486 1998-10-13 2016-10-05 8520 ENSG00000128708 OTTHUMG00000132282 uc002uhi.4 AF030424 NM_003642 CCDS2245 O14929 9427644 MGI:96013 RGD:1305716 HAT1 603053 objectId:2657 2.3.1.48 +HGNC:25174 HAUS1 HAUS augmin like complex subunit 1 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "HEI-C|HsT1461|FLJ40084" CCDC5 coiled-coil domain containing 5 (spindle associated) HAUS augmin like complex 581 2004-01-12 2009-04-20 2015-11-09 2015-11-09 115106 ENSG00000152240 OTTHUMG00000132638 uc002lbu.3 AY360137 NM_138443 CCDS11928 Q96CS2 19427217 MGI:2385076 RGD:619909 HAUS1 608775 +HGNC:43760 HAUS1P1 HAUS augmin like complex subunit 1 pseudogene 1 pseudogene pseudogene Approved 5q31.3 05q31.3 2012-02-22 2015-11-09 2015-11-09 728921 ENSG00000251453 OTTHUMG00000163364 NG_009848 PGOHUM00000235776 +HGNC:43761 HAUS1P2 HAUS augmin like complex subunit 1 pseudogene 2 pseudogene pseudogene Approved Xp22.13 Xp22.13 2012-02-22 2015-11-09 2015-11-09 441484 ENSG00000224224 OTTHUMG00000021221 NG_009849 PGOHUM00000241659 +HGNC:43762 HAUS1P3 HAUS augmin like complex subunit 1 pseudogene 3 pseudogene pseudogene Approved 8q21.11 08q21.11 2012-02-22 2015-11-09 2016-10-05 100271703 ENSG00000253226 OTTHUMG00000164623 NG_009850 PGOHUM00000249386 +HGNC:25530 HAUS2 HAUS augmin like complex subunit 2 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 "FLJ10460|HsT17025" "C15orf25|CEP27" "chromosome 15 open reading frame 25|centrosomal protein 27kDa" HAUS augmin like complex 581 2004-06-29 2009-04-20 2015-11-09 2016-10-05 55142 ENSG00000137814 OTTHUMG00000130678 uc001zqe.4 AK001322 NM_018097 "CCDS10090|CCDS45247|CCDS81867" Q9NVX0 "14702039|14654843|19427217" MGI:1913546 HAUS2 613429 +HGNC:28719 HAUS3 HAUS augmin like complex subunit 3 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "MGC4701|IT1|dgt3" C4orf15 chromosome 4 open reading frame 15 HAUS augmin like complex 581 2004-04-21 2009-04-20 2015-11-09 2015-11-09 79441 ENSG00000214367 OTTHUMG00000159805 uc003ges.2 AF040964 NM_024511 CCDS33941 Q68CZ6 "19427217|19812674" MGI:2387633 RGD:1591723 HAUS3 613430 +HGNC:20163 HAUS4 HAUS augmin like complex subunit 4 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ20424 C14orf94 chromosome 14 open reading frame 94 HAUS augmin like complex 581 2002-12-19 2009-04-20 2015-11-09 2016-10-05 54930 ENSG00000092036 OTTHUMG00000028710 uc001wht.4 AK000431 NM_017815 "CCDS9580|CCDS53886" Q9H6D7 19427217 MGI:1261794 RGD:1305288 HAUS4 613431 +HGNC:43763 HAUS4P1 HAUS augmin like complex subunit 4 pseudogene 1 pseudogene pseudogene Approved 1q24.2 01q24.2 2012-02-22 2015-11-09 2015-11-09 100129402 ENSG00000226967 OTTHUMG00000034663 NG_013098 PGOHUM00000244329 +HGNC:29130 HAUS5 HAUS augmin like complex subunit 5 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 dgt5 KIAA0841 KIAA0841 HAUS augmin like complex 581 2004-02-09 2009-04-20 2015-11-09 2015-11-09 23354 ENSG00000249115 OTTHUMG00000048110 uc002oam.2 AB020648 XR_001753641 CCDS42550 O94927 "10048485|19427217" MGI:1919159 RGD:2318093 HAUS5 613432 +HGNC:25948 HAUS6 HAUS augmin like complex subunit 6 protein-coding gene gene with protein product Approved 9p22.1 09p22.1 "FLJ20060|KIAA1574|dgt6" FAM29A family with sequence similarity 29, member A HAUS augmin like complex 581 2004-01-06 2009-04-20 2015-11-09 2015-11-09 54801 ENSG00000147874 OTTHUMG00000019622 uc003znk.5 AL832495 NM_017645 CCDS6489 Q7Z4H7 "10997877|19427217" MGI:1923389 HAUS6 613433 +HGNC:43764 HAUS6P1 HAUS augmin like complex subunit 6 pseudogene 1 pseudogene pseudogene Approved 7p12.1 07p12.1 2012-02-22 2015-11-09 2015-11-09 653175 ENSG00000227344 OTTHUMG00000155994 NG_005557 PGOHUM00000233230 +HGNC:43765 HAUS6P2 HAUS augmin like complex subunit 6 pseudogene 2 pseudogene pseudogene Approved 20q11.21 20q11.21 2012-02-22 2015-11-09 2015-11-09 100133268 ENSG00000236121 OTTHUMG00000032159 NG_029308 PGOHUM00000259635 +HGNC:50772 HAUS6P3 HAUS augmin like complex subunit 6 pseudogene 3 pseudogene pseudogene Approved 7p12.1 07p12.1 2014-06-18 2015-11-09 2015-11-09 102723574 ENSG00000235454 OTTHUMG00000156040 NG_046607 PGOHUM00000233234 +HGNC:32979 HAUS7 HAUS augmin like complex subunit 7 protein-coding gene gene with protein product Approved Xq28 Xq28 UIP1 "UCH37 interacting protein 1|26S proteasome-associated UCH interacting protein 1" UCHL5IP UCHL5 interacting protein HAUS augmin like complex 581 2006-10-30 2009-04-20 2015-11-09 2016-01-15 55559 ENSG00000213397 OTTHUMG00000159321 uc004fho.3 AF267739 NM_017518 CCDS35438 Q99871 "11163772|16395595|19427217" MGI:1920988 RGD:1562991 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=UCHL5IP HAUS7 300540 +HGNC:30532 HAUS8 HAUS augmin like complex subunit 8 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "MGC20533|NY-SAR-48" HICE1 HEC1/NDC80 interacting, centrosome associated 1 HAUS augmin like complex 581 2008-12-16 2009-04-20 2015-11-09 2015-11-09 93323 ENSG00000131351 OTTHUMG00000182672 uc002nfe.4 BC004398 NM_001011699 "CCDS32948|CCDS46009" Q9BT25 19427217 MGI:1923728 RGD:1311565 HAUS8 613434 +HGNC:43766 HAUS8P1 HAUS augmin like complex subunit 8 pseudogene 1 pseudogene pseudogene Approved 12q24.21 12q24.21 2012-02-22 2015-11-09 2015-11-09 100420901 ENSG00000257300 OTTHUMG00000169478 NG_024131 PGOHUM00000239934 +HGNC:17866 HAVCR1 hepatitis A virus cellular receptor 1 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "HAVCR-1|TIM-1|TIM1|HAVCR|TIMD1|CD365|KIM1" "T-cell immunoglobulin mucin family member 1|kidney injury molecule 1" "CD molecules|V-set domain containing" "471|590" 2002-12-04 2016-10-05 26762 ENSG00000113249 OTTHUMG00000163466 uc021ygj.2 AF043724 XM_017009339 "CCDS43392|CCDS78076" Q96D42 "9658108|11725301|18273441" MGI:2159680 RGD:708425 HAVCR1 606518 +HGNC:44033 HAVCR1P1 hepatitis A virus cellular receptor 1 pseudogene 1 pseudogene pseudogene Approved 19p12 19p12 2012-05-28 2014-11-19 100101266 NR_003603 PGOHUM00000234272 +HGNC:44035 HAVCR1P2 hepatitis A virus cellular receptor 1 pseudogene 2 pseudogene pseudogene Approved 4q26 04q26 2012-05-28 2014-11-19 100421002 NG_025245 PGOHUM00000257093 +HGNC:18437 HAVCR2 hepatitis A virus cellular receptor 2 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "Tim-3|TIM3|FLJ14428|TIMD3|CD366" T-cell immunoglobulin mucin family member 3 V-set domain containing 590 2002-12-04 2016-10-05 84868 ENSG00000135077 OTTHUMG00000130249 uc003lwk.3 AK027334 NM_032782 CCDS4333 Q8TDQ0 11823861 MGI:2159682 RGD:1305233 HAVCR2 606652 +HGNC:16915 HAX1 HCLS1 associated protein X-1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "HS1BP1|HCLSBP1" HCLS1 (and PKD2) associated protein 2005-05-19 2016-10-12 10456 ENSG00000143575 OTTHUMG00000035978 uc001fes.5 U68566 NM_006118 "CCDS1064|CCDS44230" O00165 "9058808|10760273" MGI:1346319 RGD:727960 "HAX1base: Mutation registry for severe congenital neutropenia (Kostmann disease)|http://structure.bmc.lu.se/idbase/HAX1base/|LRG_64|http://www.lrg-sequence.org/LRG/LRG_64" HAX1 605998 122370 +HGNC:4823 HBA1 hemoglobin subunit alpha 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 HBA-T3 hemoglobin, alpha 1 Hemoglobin subunits 940 2001-06-22 2015-11-23 2015-11-23 3039 ENSG00000206172 OTTHUMG00000060138 uc002cfx.2 AF349571 NM_000558 CCDS10399 P69905 "1975428|2649166" "MGI:96015|MGI:96016" RGD:1359364 "HbVar: A Database of Human Hemoglobin Variants and Thalassemias|http://globin.cse.psu.edu/globin/hbvar/menu.html|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=HBA1" HBA1 141800 138671 +HGNC:4824 HBA2 hemoglobin subunit alpha 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 HBA-T2 hemoglobin, alpha 2 Hemoglobin subunits 940 2001-06-22 2015-11-23 2015-11-23 3040 ENSG00000188536 OTTHUMG00000059924 uc002cfv.4 BC008572 NM_000517 CCDS10398 P69905 "6452630|2649166" "MGI:96015|MGI:96016" RGD:2782 "HbVar: A Database of Human Hemoglobin Variants and Thalassemias|http://globin.cse.psu.edu/globin/hbvar/menu.html|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=HBA2" HBA2 141850 122374 +HGNC:4825 HBAP1 hemoglobin subunit alpha pseudogene 1 pseudogene pseudogene Approved 16p13.3 16p13.3 "HBA-T1|HBA3|HBA3P" hemoglobin, alpha pseudogene 1 2001-06-22 2015-11-23 2015-11-23 3041 M22813 NG_000006 "7407925|1549498" +HGNC:4827 HBB hemoglobin subunit beta protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "CD113t-C|HBD|beta-globin" hemoglobin, beta Hemoglobin subunits 940 2001-06-22 2015-11-23 2016-10-05 3043 ENSG00000244734 OTTHUMG00000066678 uc001mae.2 J00173 NM_000518 CCDS7753 P68871 2649166 "MGI:5474850|MGI:5474852" RGD:2783 "HbVar: A Database of Human Hemoglobin Variants and Thalassemias|http://globin.cse.psu.edu/globin/hbvar/menu.html|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=HBB" HBB 141900 122376 +HGNC:4828 HBBP1 hemoglobin subunit beta pseudogene 1 pseudogene pseudogene Approved 11p15.4 11p15.4 "HBH1|HBHP" hemoglobin, beta pseudogene 1 1988-10-01 2015-11-23 2016-10-05 3044 ENSG00000229988 OTTHUMG00000066684 X02133 NR_001589 2649166 +HGNC:4829 HBD hemoglobin subunit delta protein-coding gene gene with protein product Approved 11p15.4 11p15.4 hemoglobin, delta Hemoglobin subunits 940 2001-06-22 2015-11-23 2016-10-05 3045 ENSG00000223609 OTTHUMG00000066674 uc001maf.2 AY034468 NM_000519 CCDS31376 P02042 2649166 RGD:1597422 "HbVar: A Database of Human Hemoglobin Variants and Thalassemias|http://globin.cse.psu.edu/globin/hbvar/menu.html|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=HBD" HBD 142000 281857 +HGNC:4830 HBE1 hemoglobin subunit epsilon 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 HBE hemoglobin, epsilon 1 Hemoglobin subunits 940 2001-06-22 2015-11-23 2016-10-05 3046 ENSG00000213931 OTTHUMG00000066675 uc001mam.2 BC015537 NM_005330 CCDS7756 P02100 2649166 MGI:96027 RGD:1305115 HBE1 142100 +HGNC:3059 HBEGF heparin binding EGF like growth factor protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "Diphtheria toxin receptor (heparin-binding EGF-like growth factor)|heparin-binding epidermal growth factor" "HEGFL|DTS|DTR" "diphtheria toxin receptor (heparin-binding epidermal growth factor-like growth factor)|heparin-binding EGF-like growth factor" 2001-06-22 2005-01-14 2016-01-21 2016-10-05 1839 ENSG00000113070 OTTHUMG00000129496 uc003lfi.4 NM_001945 CCDS4223 Q99075 "7590736|12163414" MGI:96070 RGD:2526 HBEGF 126150 +HGNC:4831 HBG1 hemoglobin subunit gamma 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 HBG-T2 hemoglobin, gamma A Hemoglobin subunits 940 2001-06-22 2015-11-23 2016-10-05 3047 ENSG00000213934 OTTHUMG00000066681 uc001mah.2 M91036 NM_000559 CCDS7754 P69891 2649166 RGD:620306 "HbVar: A Database of Human Hemoglobin Variants and Thalassemias|http://globin.cse.psu.edu/globin/hbvar/menu.html|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=HBG1" HBG1 142200 233184 +HGNC:4832 HBG2 hemoglobin subunit gamma 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 HBG-T1 hemoglobin, gamma G Hemoglobin subunits 940 2001-06-22 2015-11-23 2016-10-05 3048 ENSG00000196565 OTTHUMG00000066673 uc001mak.2 BC029387 NM_000184 CCDS7755 P69892 2649166 MGI:96027 "HbVar: A Database of Human Hemoglobin Variants and Thalassemias|http://globin.cse.psu.edu/globin/hbvar/menu.html|The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=HBG2" HBG2 142250 233186 +HGNC:4826 HBM hemoglobin subunit mu protein-coding gene gene with protein product Approved 16p13.3 16p13.3 HBK HBAP2 "hemoglobin, alpha pseudogene 2|hemoglobin, mu" Hemoglobin subunits 940 2001-06-22 2006-05-12 2015-11-23 2015-11-23 3042 ENSG00000206177 OTTHUMG00000059926 uc002cfu.2 BC035682 NM_001003938 CCDS32347 Q6B0K9 "2649166|2825132|15855277" HBM 609639 +HGNC:23200 HBP1 HMG-box transcription factor 1 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 2003-10-08 2015-08-25 26959 ENSG00000105856 OTTHUMG00000157642 uc064gwv.1 BC017069 NM_012257 CCDS5741 O60381 "9030690|11500377" MGI:894659 RGD:620444 HBP1 616714 +HGNC:4833 HBQ1 hemoglobin subunit theta 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 HBQ hemoglobin, theta 1 Hemoglobin subunits 940 2001-06-22 2015-11-23 2015-11-23 3049 ENSG00000086506 OTTHUMG00000060727 uc002cfz.4 BC056686 NM_005331 CCDS10400 P09105 2649166 "MGI:2685722|MGI:3613460" RGD:2320907 HBQ1 142240 +HGNC:4834 HBS1L HBS1 like translational GTPase protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "ERFS|HBS1|HSPC276|KIAA1038|DKFZp434g247|EF-1a|eRF3c" eRF3 family member "HBS1 (S. cerevisiae)-like|HBS1-like (S. cerevisiae)|HBS1-like translational GTPase" 2000-02-18 2015-11-18 2015-11-18 10767 ENSG00000112339 OTTHUMG00000015626 uc003qez.4 U87791 XM_017010192 "CCDS5173|CCDS47479|CCDS47480" Q9Y450 "9872408|23667253" MGI:1891704 RGD:1308509 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=HBS1L HBS1L 612450 +HGNC:4835 HBZ hemoglobin subunit zeta protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "HBZ1|HBZ-T1" hemoglobin, zeta Hemoglobin subunits 940 2001-06-22 2015-11-23 2015-11-23 3050 ENSG00000130656 OTTHUMG00000059928 uc002cft.2 M24173 NM_005332 CCDS10397 P02008 2649166 MGI:96019 RGD:1307486 HBZ 142310 +HGNC:4836 HBZP1 hemoglobin subunit zeta pseudogene 1 pseudogene pseudogene Approved 16p13.3 16p13.3 "HBZ-T2|HBZ2|HBZ2P" HBZP "hemoglobin, zeta pseudogene|hemoglobin, zeta pseudogene 1" 2001-06-22 2010-03-19 2015-11-23 2015-11-23 3051 ENSG00000206178 OTTHUMG00000059925 J00184 NG_000006 2649166 PGOHUM00000248958 +HGNC:4532 HCAR1 hydroxycarboxylic acid receptor 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "HCA1|FKSG80|TA-GPCR|LACR1" lactate receptor 1 "GPR104|GPR81" "G protein-coupled receptor 104|G protein-coupled receptor 81" Hydroxy-carboxylic acid receptors 200 2000-01-20 2011-05-30 2011-05-30 2015-09-11 27198 ENSG00000196917 uc001ucz.4 AF411110 NM_032554 CCDS9236 Q9BXC0 "11574155|19047060|18952058|21454438" MGI:2441671 RGD:1586364 HCAR1 606923 objectId:311 +HGNC:24827 HCAR2 hydroxycarboxylic acid receptor 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "HCA2|HM74A|PUMAG|Puma-g|NIACR1" niacin receptor 1 GPR109A G protein-coupled receptor 109A Hydroxy-carboxylic acid receptors 200 2004-04-22 2011-05-30 2011-05-30 2015-09-11 338442 ENSG00000182782 OTTHUMG00000162722 uc001ucx.2 AY148884 NM_177551 CCDS9235 Q8TDS4 "21167710|12522134|12646212|19141678|18983141|21454438" MGI:1933383 RGD:727952 HCAR2 609163 objectId:312 +HGNC:16824 HCAR3 hydroxycarboxylic acid receptor 3 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "HCA3|HM74" GPR109B G protein-coupled receptor 109B Hydroxy-carboxylic acid receptors 200 2004-04-22 2011-05-30 2011-05-30 2015-09-14 8843 ENSG00000255398 uc001ucy.4 D10923 NM_006018 CCDS53842 P49019 "7505609|9205127|18983141|21454438" MGI:1933383 HCAR3 606039 objectId:313 +HGNC:48612 HCCAT5 hepatocellular carcinoma associated transcript 5 (non-protein coding) non-coding RNA RNA, long non-coding Approved 16q22.3 16q22.3 "HTA|FJ222407" hepatoma associated gene 2013-05-21 2014-06-20 283902 ENSG00000260880 OTTHUMG00000172964 NR_027756 "20130911|23314567" 615613 +HGNC:4837 HCCS holocytochrome c synthase protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 CCHL cytochrome c heme-lyase MLS "holocytochrome c synthase (cytochrome c heme-lyase)|microphthalamia with linear skin defects" 1995-09-20 2010-05-11 2016-10-05 3052 ENSG00000004961 OTTHUMG00000021128 uc004cuj.4 NM_001122608 CCDS14139 P53701 "8364577|12444108" MGI:106911 RGD:1563855 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HCCS HCCS 300056 122378 4.4.1.17 +HGNC:4839 HCFC1 host cell factor C1 protein-coding gene gene with protein product Approved Xq28 Xq28 "HCF-1|HCF1|CFF|VCAF|MGC70925|PPP1R89" "VP16-accessory protein|protein phosphatase 1, regulatory subunit 89" "HFC1|MRX3" "mental retardation, X-linked 3|host cell factor C1 (VP16-accessory protein)" "X-linked mental retardation|Protein phosphatase 1 regulatory subunits|ATAC complex" "103|694|1058" 1994-10-14 2014-06-09 2015-09-11 3054 ENSG00000172534 OTTHUMG00000024222 uc004fjp.4 NM_005334 CCDS44020 P51610 "8392914|23000143" MGI:105942 RGD:1563804 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HCFC1 HCFC1 300019 317358 +HGNC:40273 HCFC1-AS1 HCFC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq28 Xq28 HCFC1 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873990 ENSG00000235802 OTTHUMG00000024223 uc065cad.1 NR_046608 +HGNC:21198 HCFC1R1 host cell factor C1 regulator 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "HPIP|FLJ20568" host cell factor C1 regulator 1 (XPO1 dependent) 2003-06-23 2016-03-21 2016-03-21 54985 ENSG00000103145 OTTHUMG00000177450 uc002csz.3 AK000575 NM_017885 "CCDS10490|CCDS32375|CCDS73815|CCDS76810" Q9NWW0 12235138 MGI:2663619 RGD:727975 HCFC1R1 +HGNC:24972 HCFC2 host cell factor C2 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 HCF-2 2004-06-18 2015-09-11 29915 ENSG00000111727 OTTHUMG00000170175 uc001tkj.5 AF117210 NM_013320 CCDS9097 Q9Y5Z7 10196288 MGI:1915183 RGD:1307385 HCFC2 607926 +HGNC:39815 HCFC2P1 host cell factor C2 pseudogene 1 pseudogene pseudogene Approved 13q33.3 13q33.3 2011-03-30 2011-03-30 100419149 ENSG00000232087 OTTHUMG00000017331 NG_024949 PGOHUM00000248683 +HGNC:17900 HCG2P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-06-28 +HGNC:30786 HCG2P2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-06-28 +HGNC:29015 HCG2P4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-06-28 +HGNC:23413 HCG2P6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-01 +HGNC:19242 HCG2P7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-01 +HGNC:19243 HCG2P8 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-01 +HGNC:21241 HCG4 HLA complex group 4 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 "HCGIV-10|HCGIV.9" HCG4P10 "HLA complex group 4|HLA complex group 4 pseudogene 10" 2003-05-29 2011-04-14 2014-11-19 54435 ENSG00000176998 OTTHUMG00000035423 AF036977 NR_002139 +HGNC:22919 HCG4B HLA complex group 4B (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 "HCGIV-6|HCGIV.5|HCGIV-06|bCX67J3.3|Em:AB023056.16|bPG309N1.1|bQB90C11.3" HCGIV-6 pseudogene HCG4P6 HLA complex group 4 pseudogene 6 2003-09-01 2011-04-14 2011-04-14 2015-09-21 80868 ENSG00000227262 OTTHUMG00000031188 X81005 NR_001317 10557312 +HGNC:30978 HCG4P1 HLA complex group 4 pseudogene 1 pseudogene pseudogene Approved 6p21.3 06p21.3 HCGIV-01 2003-12-16 2014-11-19 387503 +HGNC:30979 HCG4P2 HLA complex group 4 pseudogene 2 pseudogene pseudogene Approved 6p21.3 06p21.3 HCGIV-02 2003-12-16 2014-11-19 387504 +HGNC:22922 HCG4P3 HLA complex group 4 pseudogene 3 pseudogene pseudogene Approved 6p21.3 06p21.3 "HCGIV-03|HCGIV.2|HCGIV-3" HCGIV-03 pseudogene 2003-09-01 2014-11-19 353001 ENSG00000237669 OTTHUMG00000130502 NG_016112 10557312 +HGNC:22924 HCG4P4 HLA complex group 4 pseudogene 4 pseudogene pseudogene Approved 6p21.3 06p21.3 "HCGIV-04|HCGIV.3|HCGIV-4" HCGIV-04 pseudogene 2003-09-01 2014-11-19 353002 NG_016113 10557312 +HGNC:22925 HCG4P5 HLA complex group 4 pseudogene 5 pseudogene pseudogene Approved 6p21.3 06p21.3 "HCGIV-05|HCGIV.4|HCGIV-5" HCGIV-05 pseudogene 2003-09-01 2014-11-18 353003 ENSG00000227766 OTTHUMG00000031152 NG_016115 10557312 +HGNC:22926 HCG4P7 HLA complex group 4 pseudogene 7 pseudogene pseudogene Approved 6p21.3 06p21.3 "HCGIV-07|HCGIV.C|HCGIV-7" HCGIV-07 pseudogene 2003-09-01 2014-11-18 353004 ENSG00000230521 OTTHUMG00000130509 NG_016116 10557312 +HGNC:22927 HCG4P8 HLA complex group 4 pseudogene 8 pseudogene pseudogene Approved 6p22.1 06p22.1 "HCGIV-08|HCGIV.7|HCGIV-8" HCGIV-08 pseudogene 2003-09-01 2016-10-05 353005 ENSG00000229142 OTTHUMG00000130505 NG_016117 10557312 +HGNC:22928 HCG4P9 HLA complex group 4 pseudogene 9 pseudogene pseudogene Approved 6p21.3 06p21.3 "HCGIV-09|HCGIV-9" HCGIV-09 pseudogene 2003-09-01 2011-04-14 353014 NG_002739 10557312 +HGNC:22930 HCG4P11 HLA complex group 4 pseudogene 11 pseudogene pseudogene Approved 6p21.3 06p21.3 "HCGIV-11|HCGIV.10" HCGIV-11 pseudogene 2003-09-01 2011-04-14 353020 ENSG00000225864 OTTHUMG00000130503 NG_002744 10557312 +HGNC:21242 HCG8 HLA complex group 8 other unknown Approved 6p21.3 06p21.3 "HCGVIII|HCGVIII-1" 2003-05-29 2011-04-11 100507399 X92110 NR_103542 "10557312|8575815" 615801 +HGNC:21243 HCG9 HLA complex group 9 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 "PERB11|HCGIX|HCGIX4|HCGIX-4" HLA complex group 9 2003-05-29 2011-04-11 2016-10-05 10255 ENSG00000204625 OTTHUMG00000031119 uc003rth.4 AB088085 NR_028032 "10727083|10557312" HCG9 615797 +HGNC:30980 HCG9P1 HLA complex group 9 pseudogene 1 pseudogene pseudogene Approved 6p21.3 06p21.3 HCGIX-1 2003-12-16 2014-11-19 387505 +HGNC:30981 HCG9P2 HLA complex group 9 pseudogene 2 pseudogene pseudogene Approved 6p21.3 06p21.3 HCGIX-2 2003-12-16 2014-11-19 387506 +HGNC:30982 HCG9P3 HLA complex group 9 pseudogene 3 pseudogene pseudogene Approved 6p21.3 06p21.3 HCGIX-3.2 2003-12-16 2014-11-19 387507 +HGNC:30983 HCG9P5 HLA complex group 9 pseudogene 5 pseudogene pseudogene Approved 6p21.3 06p21.3 "HCGIX-5|dJ377H14.6" 2003-12-16 2012-06-14 353019 ENSG00000227758 OTTHUMG00000031159 AP000521 NG_002743 10557312 +HGNC:17707 HCG11 HLA complex group 11 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p22.2 06p22.2 "bK14H9.3|FLJ14049|FLJ30357" HLA complex group 11 2004-11-25 2012-04-19 2012-10-16 493812 ENSG00000228223 OTTHUMG00000014456 uc011dkp.5 AK024111 NR_026790 +HGNC:17724 HCG13P HLA complex group 13 pseudogene pseudogene pseudogene Approved 6p21 06p21 dJ193B12.5 2004-11-25 2014-11-19 493813 +HGNC:18323 HCG14 HLA complex group 14 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 dJ111M5.4 HLA complex group 14 2004-06-15 2012-04-19 2016-10-06 414760 ENSG00000224157 OTTHUMG00000031281 uc032wps.2 NR_104117 +HGNC:18361 HCG15 HLA complex group 15 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21 06p21 dJ25J6.6 HLA complex group 15 2004-06-15 2012-04-19 2012-10-16 414761 ENSG00000227214 OTTHUMG00000031267 uc063tbz.1 +HGNC:20424 HCG16 HLA complex group 16 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.3 06p21.3 dJ25J6.7 HLA complex group 16 2004-06-15 2013-03-18 2013-03-18 414766 ENSG00000244349 OTTHUMG00000031270 uc063uwx.1 NR_135289 +HGNC:31339 HCG17 HLA complex group 17 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 "NCRNA00046|LINC00046" "non-protein coding RNA 46|long intergenic non-protein coding RNA 46" 2004-06-15 2008-08-13 2016-10-05 414778 ENSG00000270604 OTTHUMG00000031114 uc063tfb.1 AB023055 NR_052012 +HGNC:31337 HCG18 HLA complex group 18 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 "FLJ31598|FLJ25550|Em:AB014087.1" HLA complex group 18 2004-06-15 2011-08-31 2016-10-05 414777 ENSG00000231074 OTTHUMG00000031138 uc031svu.2 AK056160 NR_024052 +HGNC:31336 HCG19P HLA complex group 19 pseudogene pseudogene pseudogene Approved 6p21.3 06p21.3 AB014085.4 2004-06-15 2014-11-19 414776 ENSG00000224486 OTTHUMG00000031057 +HGNC:31334 HCG20 HLA complex group 20 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21 06p21 "AB023051.1|NCRNA00149" non-protein coding RNA 149 2004-06-15 2008-09-15 2015-07-24 105375013 ENSG00000228022 OTTHUMG00000031193 uc063ypc.1 XR_926687 +HGNC:31335 HCG21 HLA complex group 21 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21 06p21 "AB023048.2|NCRNA00150" non-protein coding RNA 150 2004-06-15 2008-09-15 2015-07-24 102723346 ENSG00000233529 OTTHUMG00000031182 uc063tzw.1 XR_926690 +HGNC:27780 HCG22 HLA complex group 22 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "FLJ37114|PBMUCL2" panbronchiolitis related mucin-like 2 HLA complex group 22 (non-protein coding) 2004-06-15 2013-12-20 2016-10-05 285834 ENSG00000228789 OTTHUMG00000031179 uc063xkr.1 AK094433 NR_003948 E2RYF7 14702039 613918 +HGNC:19713 HCG23 HLA complex group 23 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.32 06p21.32 dJ1077I5.3 HLA complex group 23 2004-06-15 2012-04-19 2016-10-11 414764 ENSG00000228962 OTTHUMG00000031217 uc021zxr.2 NR_044996 +HGNC:23500 HCG24 HLA complex group 24 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21 06p21 dJ1033B10.15 HLA complex group 24 2004-06-15 2012-04-19 2012-10-16 414768 ENSG00000230313 OTTHUMG00000031166 uc063vze.1 XR_926704 +HGNC:20196 HCG25 HLA complex group 25 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.32 06p21.32 dJ1033B10.16 HLA complex group 25 2004-06-15 2012-04-19 2016-10-11 414765 ENSG00000232940 OTTHUMG00000031170 uc021zmm.2 NR_044997 +HGNC:29671 HCG26 HLA complex group 26 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.3 06p21.3 "bPG181B23.4|bCX205D4.4|NCRNA00191" non-protein coding RNA 191 HLA complex group 26 2004-06-15 2009-08-21 2012-10-16 352961 AB088105 NR_002812 +HGNC:27366 HCG27 HLA complex group 27 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 "bPG299F13.9|bCX101P6.9|bQB115I13.2|FLJ40123" HLA complex group 27 2004-06-15 2011-08-31 2016-10-05 253018 ENSG00000206344 OTTHUMG00000031248 uc011dni.5 AK097442 NR_026791 12477932 +HGNC:18573 HCHOLA4 hypercholesterolemia, autosomal dominant 4 phenotype phenotype only Approved 16q22.1 16q22.1 2002-05-22 2011-02-18 246132 20571503 +HGNC:4840 HCK HCK proto-oncogene, Src family tyrosine kinase protein-coding gene gene with protein product Approved 20q11.21 20q11.21 JTK9 hemopoietic cell kinase SH2 domain containing 741 1986-01-01 2014-06-25 2016-10-05 3055 ENSG00000101336 OTTHUMG00000032204 uc061wdn.1 AK026432 NM_002110 "CCDS33460|CCDS54453|CCDS54455|CCDS54456" P08631 3496523 MGI:96052 RGD:2785 HCK 142370 objectId:2032 +HGNC:4841 HCL1 hair color 1 (brown) phenotype phenotype only Approved 19p13.1-q13.11 19p13.1-q13.11 BRHC 2001-06-22 2012-10-02 3056 +HGNC:4842 HCL2 hair color 2 (red) phenotype phenotype only Approved 4q28-q31 04q28-q31 "RHC|RHA" 2001-06-22 2012-10-02 3057 +HGNC:4843 HCL3 hair color 3 (brown) phenotype phenotype only Approved 15q 15q 1996-11-15 2011-02-10 8875191 +HGNC:4844 HCLS1 hematopoietic cell-specific Lyn substrate 1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "HS1|CTTNL" cortactin-like 1995-09-26 2016-10-05 3059 ENSG00000180353 OTTHUMG00000159409 uc003eeh.5 NM_005335 "CCDS3003|CCDS77800" P14317 "8978766|15710041" MGI:104568 RGD:1304754 HCLS1 601306 +HGNC:4845 HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding gene gene with protein product Approved 5p12 05p12 "BCNG-1|HAC-2" BCNG1 hyperpolarization activated cyclic nucleotide-gated potassium channel 1 Cyclic nucleotide gated channels 250 1998-08-20 2015-01-15 2015-09-11 348980 ENSG00000164588 OTTHUMG00000131155 uc003jok.5 AF064876 NM_021072 CCDS3952 O60741 "9405696|9630217|16382102" MGI:1096392 RGD:620688 HCN1 602780 413970 objectId:400 +HGNC:4846 HCN2 hyperpolarization activated cyclic nucleotide gated potassium channel 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "BCNG-2|HAC-1" BCNG2 hyperpolarization activated cyclic nucleotide-gated potassium channel 2 Cyclic nucleotide gated channels 250 1998-08-20 2015-01-15 2016-10-06 610 ENSG00000099822 OTTHUMG00000180590 uc002lpe.3 AF064877 NM_001194 CCDS12035 Q9UL51 "9405696|9630217|16382102" MGI:1298210 RGD:620689 HCN2 602781 objectId:401 +HGNC:19183 HCN3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 protein-coding gene gene with protein product Approved 1q22 01q22 KIAA1535 hyperpolarization activated cyclic nucleotide-gated potassium channel 3 Cyclic nucleotide gated channels 250 2002-09-02 2015-01-15 2016-10-05 57657 ENSG00000143630 OTTHUMG00000035872 uc001fjz.3 AB040968 NM_020897 CCDS1108 Q9P1Z3 16382102 MGI:1298211 RGD:620691 HCN3 609973 objectId:402 +HGNC:16882 HCN4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 hyperpolarization activated cyclic nucleotide-gated potassium channel 4 Cyclic nucleotide gated channels 250 2002-09-02 2015-01-15 2015-09-11 10021 ENSG00000138622 OTTHUMG00000137563 uc002avp.3 AJ132429 NM_005477 CCDS10248 Q9Y3Q4 "10228147|10430953|16382102" MGI:1298209 RGD:71065 HCN4 605206 122381 objectId:403 +HGNC:21659 HCP5 HLA complex P5 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 "D6S2650E|P5-1" HLA complex P5 2003-07-07 2011-08-02 2016-10-05 10866 ENSG00000206337 OTTHUMG00000031282 uc003ntl.4 D88650 NR_040662 Q6MZN7 "8462994|10199916" HCP5 604676 +HGNC:30984 HCP5B HLA complex P5B (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.3 06p21.3 "P5-10|P5.9" HCP5P10 HLA complex P5 pseudogene 10 2003-12-16 2011-08-11 2011-08-11 2014-11-18 352990 ENSG00000281831 OTTHUMG00000189541 uc032wpz.1 BC035828 +HGNC:21662 HCP5P2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:23084 HCP5P3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:21660 HCP5P6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:30985 HCP5P8 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:21671 HCP5P12 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-08-11 +HGNC:30977 HCP5P13 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-08-11 +HGNC:30976 HCP5P14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-08-11 +HGNC:21670 HCP5P15 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:4847 HCRT hypocretin neuropeptide precursor protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "PPOX|OX" "prepro-orexin|orexin" hypocretin (orexin) neuropeptide precursor Endogenous ligands 542 1998-04-21 2016-06-21 2016-10-06 3060 ENSG00000161610 OTTHUMG00000180107 uc002hzc.1 AF041240 NM_001524 CCDS11421 O43612 "9419374|9491897" MGI:1202306 RGD:2786 HCRT 602358 122383 +HGNC:4848 HCRTR1 hypocretin receptor 1 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 OX1R orexin receptor 1 hypocretin (orexin) receptor 1 Hypocretin receptors 228 1998-04-21 2016-01-29 2016-10-05 3061 ENSG00000121764 OTTHUMG00000003876 uc001btd.3 AF041243 NM_001525 CCDS344 O43613 9491897 MGI:2385650 RGD:2787 HCRTR1 602392 objectId:321 +HGNC:4849 HCRTR2 hypocretin receptor 2 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 OX2R orexin receptor 2 hypocretin (orexin) receptor 2 Hypocretin receptors 228 1998-04-21 2016-01-29 2016-01-29 3062 ENSG00000137252 OTTHUMG00000016150 uc003pcl.5 AF041245 XM_017010798 CCDS4956 O43614 9491897 MGI:2680765 RGD:2788 HCRTR2 602393 objectId:322 +HGNC:16977 HCST hematopoietic cell signal transducer protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "DAP10|DKFZP586C1522|KAP10" "DNAX-activation protein 10|kinase assoc pro of ~10kDa" PIK3AP phosphoinositide-3-kinase adaptor protein 2003-03-04 2003-10-15 2003-10-14 2016-10-05 10870 ENSG00000126264 OTTHUMG00000048132 uc002ocl.2 AF072844 NM_014266 "CCDS32998|CCDS46057" Q9UBK5 10426994 MGI:1344360 RGD:1359238 HCST 604089 +HGNC:4850 HCVS human coronavirus sensitivity phenotype phenotype only Approved 15q11-qter 15q11-qter 2001-06-22 2012-10-02 3063 6285532 122460 +HGNC:4852 HDAC1 histone deacetylase 1 protein-coding gene gene with protein product Approved 1p35.2-p35.1 01p35.2-p35.1 "HD1|GON-10" RPD3L1 "Histone deacetylases, class I|EMSY complex|NuRD complex" "989|1243|1305" 1996-11-15 2016-10-11 3065 ENSG00000116478 OTTHUMG00000007529 uc001bvb.2 D50405 NM_004964 CCDS360 Q13547 8602529 MGI:108086 RGD:1309799 HDAC1 601241 objectId:2658 +HGNC:45190 HDAC1P1 histone deacetylase 1 pseudogene 1 pseudogene pseudogene Approved 10q23.33 10q23.33 2013-03-05 2013-06-06 100419595 ENSG00000234724 OTTHUMG00000018784 NG_025534 PGOHUM00000238893 +HGNC:45191 HDAC1P2 histone deacetylase 1 pseudogene 2 pseudogene pseudogene Approved 1q41 01q41 2013-03-05 2013-03-05 100419489 ENSG00000233012 OTTHUMG00000037360 NG_027210 PGOHUM00000245213 +HGNC:4853 HDAC2 histone deacetylase 2 protein-coding gene gene with protein product Approved 6q21 06q21 "RPD3|YAF1" "Histone deacetylases, class I|EMSY complex|NuRD complex" "989|1243|1305" 1996-11-15 2016-04-25 3066 ENSG00000196591 OTTHUMG00000015411 uc003pwd.3 U31814 XM_017010799 CCDS43493 Q92769 9782097 MGI:1097691 RGD:619976 HDAC2 605164 objectId:2616 +HGNC:4854 HDAC3 histone deacetylase 3 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "RPD3|HD3|RPD3-2" Histone deacetylases, class I 989 1999-01-29 2016-10-05 8841 ENSG00000171720 OTTHUMG00000129629 uc003llf.3 AF059650 NM_003883 CCDS4264 O15379 "9501169|9464271" MGI:1343091 RGD:619977 HDAC3 605166 objectId:2617 3.5.1.98 +HGNC:14063 HDAC4 histone deacetylase 4 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "KIAA0288|HDAC-A|HDACA|HD4|HA6116|HDAC-4" BDMR brachydactyly-mental retardation syndrome Histone deacetylases, class IIA 992 2000-11-28 2015-09-11 9759 ENSG00000068024 OTTHUMG00000133344 uc002vyk.4 AB006626 NM_006037 CCDS2529 P56524 "10206986|10220385|20691407" MGI:3036234 RGD:619979 HDAC4 605314 238991 objectId:2659 +HGNC:14068 HDAC5 histone deacetylase 5 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "KIAA0600|NY-CO-9|FLJ90614" Histone deacetylases, class IIA 992 2000-11-28 2016-10-06 10014 ENSG00000108840 OTTHUMG00000181806 uc002iff.2 AF249731 NM_001015053 "CCDS32663|CCDS45696" Q9UQL6 "10220385|9610721" MGI:1333784 RGD:619980 HDAC5 605315 objectId:2660 3.5.1.98 +HGNC:14064 HDAC6 histone deacetylase 6 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "KIAA0901|JM21|HD6|FLJ16239|PPP1R90" protein phosphatase 1, regulatory subunit 90 "Protein phosphatase 1 regulatory subunits|Histone deacetylases, class IIB" "694|993" 2000-11-28 2015-09-11 10013 ENSG00000094631 OTTHUMG00000034496 uc004dks.2 AF132609 NM_006044 CCDS14306 Q9UBN7 "10220385|10048485" MGI:1333752 RGD:9411462 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HDAC6 HDAC6 300272 248481 objectId:2618 +HGNC:14067 HDAC7 histone deacetylase 7 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 DKFZP586J0917 HDAC7A histone deacetylase 7A Histone deacetylases, class IIA 992 2001-07-13 2008-02-25 2008-02-25 2016-10-05 51564 ENSG00000061273 OTTHUMG00000152968 uc010slo.3 AF239243 XM_017019455 "CCDS8756|CCDS41776|CCDS81685" Q8WUI4 "10922406|10640276" MGI:1891835 RGD:619982 HDAC7 606542 objectId:2661 +HGNC:13315 HDAC8 histone deacetylase 8 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 RPD3 "HDACL1|WTS|MRXS6" "histone deacetylase-like 1|Wilson-Turner X-linked mental retardation syndrome" "X-linked mental retardation|Histone deacetylases, class I" "103|989" 2000-11-28 2002-09-06 2002-09-02 2016-10-05 55869 ENSG00000147099 OTTHUMG00000021814 uc004eau.3 AF230097 NM_018486 "CCDS14420|CCDS55448|CCDS55449|CCDS55450|CCDS55451|CCDS55452" Q9BY41 "10756090|10922473|22889856" MGI:1917565 RGD:1562895 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HDAC8 HDAC8 300269 290272 objectId:2619 +HGNC:14065 HDAC9 histone deacetylase 9 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "KIAA0744|HDAC|MITR|HD7|HDAC7B" Histone deacetylases, class IIA 992 2002-09-06 2015-09-11 9734 ENSG00000048052 OTTHUMG00000152487 uc011jya.3 AF124924 NM_001204144 "CCDS47553|CCDS47554|CCDS47555|CCDS47557|CCDS56465|CCDS56466|CCDS56467|CCDS56468|CCDS75565|CCDS83163" Q9UKV0 "10523670|10487760" MGI:1931221 RGD:1310748 HDAC9 606543 122391 objectId:2620 +HGNC:18128 HDAC10 histone deacetylase 10 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 DKFZP761B039 Histone deacetylases, class IIB 993 2002-04-30 2016-10-05 83933 ENSG00000100429 OTTHUMG00000044647 uc003bkg.4 AF393962 NM_032019 "CCDS14088|CCDS54545" Q969S8 "11677242|11726666" MGI:2158340 RGD:1305874 HDAC10 608544 objectId:2614 +HGNC:19086 HDAC11 histone deacetylase 11 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 Histone deacetylases, class IV 991 2002-08-09 2014-11-19 79885 ENSG00000163517 OTTHUMG00000129800 uc003bxy.4 AK025426 NM_024827 "CCDS2615|CCDS46760|CCDS82738" Q96DB2 11948178 MGI:2385252 RGD:1311706 HDAC11 607226 objectId:2615 3.5.1.98 +HGNC:40868 HDAC11-AS1 HDAC11 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.1 03p25.1 HDAC11 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874101 ENSG00000244502 OTTHUMG00000155438 uc062gwz.1 NR_046690 +HGNC:4855 HDC histidine decarboxylase protein-coding gene gene with protein product Approved 15q21.2 15q21.2 1990-12-19 2015-08-25 3067 ENSG00000140287 OTTHUMG00000131644 uc001zxz.4 XM_017022094 "CCDS10134|CCDS76754" P19113 1487235 MGI:96062 RGD:2790 HDC 142704 411115 objectId:1274 4.1.1.22 +HGNC:21078 HDDC2 HD domain containing 2 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "CGI-130|dJ167O5.2" C6orf74 chromosome 6 open reading frame 74 2003-11-26 2005-08-22 2005-08-22 2016-10-05 51020 ENSG00000111906 OTTHUMG00000015506 uc003qaa.2 AF151888 NM_016063 CCDS43503 Q7Z4H3 10810093 MGI:1916942 RGD:1307562 HDDC2 +HGNC:30522 HDDC3 HD domain containing 3 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 MGC45386 2005-08-22 2014-11-19 374659 ENSG00000184508 OTTHUMG00000141260 uc032cpi.2 AK057584 NM_198527 "CCDS10366|CCDS66866" Q8N4P3 12477932 MGI:1915945 RGD:1311839 HDDC3 +HGNC:4856 HDGF hepatoma-derived growth factor protein-coding gene gene with protein product Approved 1q23.1 01q23.1 HMG1L2 high-mobility group protein 1-like hepatoma-derived growth factor (high-mobility group protein 1-like) PWWP domain containing 1147 1998-01-08 2010-03-19 2014-11-19 3068 ENSG00000143321 OTTHUMG00000041295 uc001fpy.5 D16431 NM_004494 "CCDS1156|CCDS44247|CCDS44248" P51858 8833162 MGI:1194494 RGD:70961 HDGF 600339 +HGNC:21095 HDGFL1 hepatoma derived growth factor-like 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 dJ309H15.1 PWWP1 PWWP domain containing 1 PWWP domain containing 1147 2003-05-20 2005-04-07 2005-04-07 2016-10-05 154150 ENSG00000112273 OTTHUMG00000016206 uc003nds.4 AK056824 NM_138574 CCDS34347 Q5TGJ6 MGI:1194493 HDGFL1 +HGNC:31836 HDGFP1 hepatoma-derived growth factor pseudogene 1 pseudogene pseudogene Approved Xq26.2 Xq26.2 HDGFP hepatoma-derived growth factor (high-mobility group protein 1-like) pseudogene 2004-10-29 2010-03-19 2010-03-19 2016-10-05 474167 ENSG00000227183 OTTHUMG00000022415 AL109853 NG_004722 PGOHUM00000242017 +HGNC:25364 HDHD2 haloacid dehalogenase like hydrolase domain containing 2 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 DKFZP564D1378 haloacid dehalogenase-like hydrolase domain containing 2 2004-08-09 2015-12-01 2015-12-01 84064 ENSG00000167220 OTTHUMG00000179411 uc002lcs.4 AL136681 NM_032124 CCDS32829 Q9H0R4 11230166 MGI:1924237 RGD:1308579 HDHD2 +HGNC:28171 HDHD3 haloacid dehalogenase like hydrolase domain containing 3 protein-coding gene gene with protein product Approved 9q32 09q32 MGC12904 C9orf158 "chromosome 9 open reading frame 158|haloacid dehalogenase-like hydrolase domain containing 3" 2004-05-10 2004-08-12 2015-12-01 2016-10-05 81932 ENSG00000119431 OTTHUMG00000020524 uc004bhk.4 AK097067 NM_031219 CCDS6793 Q9BSH5 12477932 MGI:1919998 RGD:1585262 HDHD3 +HGNC:4857 HDLBP high density lipoprotein binding protein protein-coding gene gene with protein product Approved 2q37.3 02q37.3 HBP VGL vigilin 1992-12-01 2008-07-18 2015-09-11 3069 ENSG00000115677 OTTHUMG00000133391 uc002wba.4 NM_203346 "CCDS2547|CCDS58760" Q00341 "1318310|8390966" MGI:99256 RGD:620962 HDLBP 142695 +HGNC:30996 HDLCQ1 high density lipoprotein cholesterol level QTL 1 phenotype phenotype only Approved 9p 09p 2003-12-22 2011-02-10 192144 11743583 606613 +HGNC:26411 HDX highly divergent homeobox protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 FLJ30678 CXorf43 chromosome X open reading frame 43 POU class homeoboxes and pseudogenes 523 2004-09-09 2007-07-13 2007-07-13 2014-11-18 139324 ENSG00000165259 OTTHUMG00000021926 uc004eek.3 BX538112 NM_144657 "CCDS35342|CCDS55456" Q7Z353 MGI:2685226 RGD:1563666 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HDX HDX 8581 +HGNC:25517 HEATR1 HEAT repeat containing 1 protein-coding gene gene with protein product Approved 1q43 01q43 "FLJ10359|BAP28|UTP10" UTP10, small subunit (SSU) processome component, homolog (yeast) Minor histocompatibility antigens 870 2005-07-29 2015-08-25 55127 ENSG00000119285 OTTHUMG00000040061 uc001hyd.3 BC065205 XM_375853 CCDS31066 Q9H583 17699751 MGI:2442524 RGD:9119472 HEATR1 +HGNC:26087 HEATR3 HEAT repeat containing 3 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 FLJ20718 2006-04-05 2014-11-19 55027 ENSG00000155393 OTTHUMG00000133174 uc002efw.4 BC018730 NM_182922 CCDS10739 Q7Z4Q2 12477932 MGI:2444491 RGD:1308267 HEATR3 614951 +HGNC:16761 HEATR4 HEAT repeat containing 4 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 MGC48595 2006-10-16 2016-04-25 399671 ENSG00000187105 OTTHUMG00000171602 uc021rwf.3 BC047590 NM_203309 CCDS9815 Q86WZ0 15489334 MGI:4937307 RGD:1566220 HEATR4 +HGNC:20276 HEATR5A HEAT repeat containing 5A protein-coding gene gene with protein product Approved 14q12 14q12 DKFZP434I1735 C14orf125 chromosome 14 open reading frame 125 2003-01-17 2007-01-02 2007-01-02 2014-11-19 25938 ENSG00000129493 OTTHUMG00000169043 uc001wrf.5 AB037737 NM_015473 CCDS45094 Q86XA9 MGI:2444133 RGD:1561116 HEATR5A +HGNC:29273 HEATR5B HEAT repeat containing 5B protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "KIAA1414|DKFZp686P15184" 2007-01-02 2015-09-11 54497 ENSG00000008869 OTTHUMG00000152158 uc002rpp.2 AB037835 NM_019024 CCDS33181 Q9P2D3 10718198 MGI:2444098 RGD:1359216 HEATR5B +HGNC:24076 HEATR6 HEAT repeat containing 6 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "ABC1|FLJ22087" amplified in breast cancer 1 2007-05-01 2016-10-06 63897 ENSG00000068097 OTTHUMG00000179981 uc002iyk.2 BX640819 NM_022070 CCDS11623 Q6AI08 12755490 MGI:1919790 RGD:1566204 HEATR6 +HGNC:26548 HEATR9 HEAT repeat containing 9 protein-coding gene gene with protein product Approved 17q12 17q12 FLJ32830 C17orf66 chromosome 17 open reading frame 66 2005-12-16 2014-04-03 2014-04-03 2015-08-26 256957 ENSG00000270379 OTTHUMG00000188393 AK057392 NM_152781 "CCDS11299|CCDS82108" A2RTY3 12477932 MGI:3650286 RGD:1559875 +HGNC:17176 HEBP1 heme binding protein 1 protein-coding gene gene with protein product Approved 12p13.1 12p13.1 "HEBP|HBP" Endogenous ligands 542 2001-11-16 2016-10-05 50865 ENSG00000013583 OTTHUMG00000168771 uc001rbd.4 AF117615 NM_015987 CCDS31749 Q9NRV9 10640688 MGI:1333880 RGD:1304581 HEBP1 605826 +HGNC:15716 HEBP2 heme binding protein 2 protein-coding gene gene with protein product Approved 6q24.1 06q24.1 SOUL C6orf34 chromosome 6 open reading frame 34 2001-06-04 2002-09-27 2002-09-23 2016-10-05 23593 ENSG00000051620 OTTHUMG00000015671 uc003qhw.2 AF117616 NM_001326380 CCDS5191 Q9Y5Z4 "10640688|17098234" MGI:1860084 RGD:1311553 HEBP2 605825 +HGNC:21041 HECA hdc homolog, cell cycle regulator protein-coding gene gene with protein product Approved 6q24.1 06q24.1 "HDCL|hHDC|HDC|dJ225E12.1" headcase homolog (Drosophila) 2003-06-10 2015-07-23 2016-10-05 51696 ENSG00000112406 OTTHUMG00000015686 uc003qin.4 AB033492 NM_016217 CCDS5194 Q9UBI9 "11696983|19643820|22100912" MGI:2685715 RGD:1304818 HECA 607977 +HGNC:20157 HECTD1 HECT domain E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 14q12 14q12 KIAA1131 HECT domain containing E3 ubiquitin protein ligase 1 Ankyrin repeat domain containing 403 2002-12-18 2016-03-09 2016-03-09 25831 ENSG00000092148 OTTHUMG00000170670 uc059anr.1 AB032957 XM_011536619 CCDS41939 Q9ULT8 10574461 MGI:2384768 RGD:1561653 HECTD1 +HGNC:26736 HECTD2 HECT domain E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 10q23.32 10q23.32 FLJ37306 HECT domain containing E3 ubiquitin protein ligase 2 2004-05-27 2016-03-09 2016-03-09 143279 ENSG00000165338 OTTHUMG00000018742 uc001khl.4 AK094625 XM_017015750 "CCDS7414|CCDS7415|CCDS60591" Q5U5R9 "8619474|9110174" MGI:2442663 RGD:1305536 HECTD2 +HGNC:48679 HECTD2-AS1 HECTD2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.32 10q23.32 2014-08-01 2014-08-01 100188947 NR_024467 +HGNC:26117 HECTD3 HECT domain E3 ubiquitin protein ligase 3 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 FLJ21156 HECT domain containing E3 ubiquitin protein ligase 3 2005-07-07 2016-03-09 2016-03-09 79654 ENSG00000126107 OTTHUMG00000008587 uc009vxk.4 BC019105 NM_024602 CCDS41318 Q5T447 18194665 MGI:1923858 RGD:1309823 HECTD3 +HGNC:26611 HECTD4 HECT domain E3 ubiquitin protein ligase 4 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "FLJ34154|KIAA0614" C12orf51 "chromosome 12 open reading frame 51|HECT domain containing E3 ubiquitin protein ligase 4" 2006-01-24 2012-08-14 2016-03-09 2016-03-09 283450 ENSG00000173064 OTTHUMG00000150719 uc058tks.2 AK091473 NM_173813 Q9Y4D8 21270382 MGI:3647820 RGD:1309762 +HGNC:22195 HECW1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 7p14.1-p13 07p14.1-p13 "KIAA0322|NEDL1" C2 domain containing 823 2004-12-13 2016-10-11 23072 ENSG00000002746 OTTHUMG00000128917 uc003tid.2 AB048365 NM_015052 "CCDS5469|CCDS69286" Q76N89 "12690205|14684739" MGI:2444115 RGD:1561038 HECW1 610384 +HGNC:41465 HECW1-IT1 HECW1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 HECW1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100127950 ENSG00000181211 OTTHUMG00000155204 uc003tif.1 NR_135295 +HGNC:29853 HECW2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 2q32.3 02q32.3 "KIAA1301|NEDL2" C2 domain containing 823 2004-12-13 2015-08-25 57520 ENSG00000138411 OTTHUMG00000154435 uc002utm.2 AL390186 NM_020760 "CCDS33354|CCDS77499" Q9P2P5 "10718198|12890487" MGI:2685817 RGD:1593244 HECW2 +HGNC:29227 HEG1 heart development protein with EGF like domains 1 protein-coding gene gene with protein product Approved 3q21.2 03q21.2 "KIAA1237|HEG" heart of glass "HEG homolog 1 (zebrafish)|heart development protein with EGF-like domains 1" 2005-03-01 2016-01-21 2016-01-21 57493 ENSG00000173706 OTTHUMG00000159486 uc003ehs.4 AK074987 XM_087386 CCDS46898 Q9ULI3 "10574462|19151727|23007647" MGI:1924696 RGD:1564641 HEG1 614182 +HGNC:45049 HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA non-coding RNA RNA, long non-coding Approved 5q35.3 05q35.3 "LINC-HEIH|lncRNA-HEIH|LINC00848|HCCAT2" "long intergenic non-protein coding RNA 848|highly expressed in hepatocellular carcinoma long non-coding RNA|hepatocellular carcinoma associated transcript 2 (non-protein coding)" Long non-coding RNAs 788 2013-03-22 2013-05-23 2014-07-18 100859930 ENSG00000278970 OTTHUMG00000162271 uc003mmj.4 BC019622 NR_045680 "21769904|23359273" +HGNC:17196 HELB DNA helicase B protein-coding gene gene with protein product Approved 12q14.3 12q14.3 helicase (DNA) B 2004-03-25 2016-06-21 2016-10-05 92797 ENSG00000127311 OTTHUMG00000169006 uc058qna.1 AF319995 XM_005269234 CCDS8976 Q8NG08 12181327 MGI:2152895 RGD:1560103 HELB 614539 +HGNC:4860 HELIGL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:43984 HELLPAR HELLP associated long non-coding RNA non-coding RNA RNA, long non-coding Approved 12q23.2 12q23.2 LINC-HELLP long intergenic non-protein coding RNA associated with HELLP syndrome 2012-11-05 2012-11-08 2015-10-23 101101692 ENSG00000281344 OTTHUMG00000189570 uc058skb.1 JX088243 23093777 614985 325025 +HGNC:4861 HELLS helicase, lymphoid-specific protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "PASG|SMARCA6|LSH|Nbla10143" "SWI/SNF2-related, matrix-associated, actin-dependent regulator of chromatin, subfamily A, member 6|proliferation-associated SNF2-like protein" DNA helicases 1167 1998-07-15 2016-10-05 3070 ENSG00000119969 OTTHUMG00000018793 uc001kjt.5 AF155827 NM_018063 "CCDS7434|CCDS73162|CCDS73163|CCDS73164|CCDS73165" Q9NRZ9 "9878251|10910076" MGI:106209 RGD:1309820 HELLS 603946 436818 +HGNC:18536 HELQ helicase, POLQ-like protein-coding gene gene with protein product Approved 4q21.23 04q21.23 Hel308 RNA helicases 1168 2009-02-26 2014-11-19 113510 ENSG00000163312 OTTHUMG00000130423 uc003hom.4 AF436845 NM_133636 "CCDS3603|CCDS75158" Q8TDG4 11751861 MGI:2176740 RGD:1560216 HELQ 606769 +HGNC:33783 HELT helt bHLH transcription factor protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "HESL|HCM1228|Mgn|bHLHb44|MEGANE" "megane bHLH factor|HES-like" "Hey-like transcription factor (zebrafish)|HES/HEY-like transcription factor" Basic helix-loop-helix proteins 420 2008-04-21 2011-09-12 2014-11-19 391723 ENSG00000187821 OTTHUMG00000160484 uc011cko.3 BC144567 NM_001300781 "CCDS75214|CCDS75215" A6NFD8 "14764602|17611227" MGI:3040955 RGD:1564073 HELT +HGNC:16878 HELZ helicase with zinc finger protein-coding gene gene with protein product Approved 17q24.2 17q24.2 "KIAA0054|HUMORF5|DHRC" down-regulated in human cancers "Zinc fingers CCCH-type|UPF1 like RNA helicases" "73|1169" 2002-02-15 2013-01-18 9931 ENSG00000198265 OTTHUMG00000179555 uc002jfx.5 D29677 NM_014877 "CCDS42374|CCDS82192" P42694 "10471385|12691822" MGI:1925705 RGD:1307049 HELZ 606699 +HGNC:30021 HELZ2 helicase with zinc finger 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "PDIP1|PRIC285|KIAA1769" "peroxisomal proliferator activated receptor A interacting complex 285|PPARG-DBD-interacting protein 1" helicase with zinc finger 2, transcriptional coactivator UPF1 like RNA helicases 1169 2012-09-26 2016-04-05 2016-04-05 85441 ENSG00000130589 OTTHUMG00000032969 uc061ynp.1 AB201715 NM_001037335 "CCDS13527|CCDS33508" Q9BYK8 "11214970|12189208|16239304" MGI:2385169 RGD:1306056 611265 +HGNC:17509 HEMGN hemogen protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "EDAG|CT155|NDR" 2002-06-11 2014-11-19 55363 ENSG00000136929 OTTHUMG00000020336 uc004axz.5 AF228713 NM_197978 CCDS6731 Q9BXL5 MGI:2136910 RGD:621569 HEMGN 610715 +HGNC:24923 HEMK1 HemK methyltransferase family member 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 MTQ1 2004-07-12 2016-10-05 51409 ENSG00000114735 OTTHUMG00000156849 uc003dau.4 AF172244 NM_016173 CCDS2830 Q9Y5R4 10690633 MGI:1916786 RGD:1308293 HEMK1 +HGNC:26400 HENMT1 HEN1 methyltransferase homolog 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "FLJ30525|HEN1" hua enhancer 1 homolog 1 (Arabidopsis) C1orf59 "chromosome 1 open reading frame 59|HEN1 methyltransferase homolog 1 (Arabidopsis)" 2005-05-13 2011-01-28 2016-03-17 2016-03-17 113802 ENSG00000162639 OTTHUMG00000011123 uc001dvu.5 NM_144584 CCDS787 Q5T8I9 MGI:1913965 RGD:1306230 HENMT1 612178 +HGNC:4865 HEP10 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:26361 HEPACAM hepatic and glial cell adhesion molecule protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "FLJ25530|hepaCAM|GLIALCAM" glial cell adhesion molecule hepatocyte cell adhesion molecule "V-set domain containing|Immunoglobulin like domain containing" "590|594" 2007-01-22 2011-02-11 2014-11-19 220296 ENSG00000165478 OTTHUMG00000165938 uc001qbk.4 AK098396 NM_152722 CCDS8456 Q14CZ8 "15885354|15917256" MGI:1920177 RGD:1306811 HEPACAM 611642 264482 +HGNC:27364 HEPACAM2 HEPACAM family member 2 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 FLJ38683 "V-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "590|593|594" 2008-07-11 2008-07-11 2016-10-05 253012 ENSG00000188175 OTTHUMG00000131732 uc003umm.5 AK096002 NM_198151 "CCDS5629|CCDS43616|CCDS75631|CCDS75632" A8MVW5 12975309 MGI:2141520 RGD:1305697 HEPACAM2 614133 +HGNC:4866 HEPH hephaestin protein-coding gene gene with protein product Approved Xq12 Xq12 "KIAA0698|CPL" 1999-05-07 2016-10-05 9843 ENSG00000089472 OTTHUMG00000021732 uc011moz.4 AB014598 NM_138737 "CCDS14384|CCDS14385|CCDS48133|CCDS65277" Q9BQS7 "9988272|9734811" MGI:1332240 RGD:71060 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HEPH HEPH 300167 +HGNC:30477 HEPHL1 hephaestin like 1 protein-coding gene gene with protein product Approved 11q21 11q21 DKFZp686F22190 2004-11-03 2015-11-23 2015-11-23 341208 ENSG00000181333 OTTHUMG00000167751 uc001pep.3 BX641008 XM_291947 CCDS44710 Q6MZM0 MGI:2685355 RGD:1564835 HEPHL1 +HGNC:34400 HEPN1 hepatocellular carcinoma, down-regulated 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 cancer susceptibility gene HEPN1 HEPACAM opposite strand 1 2008-07-11 2011-02-11 2016-10-05 641654 ENSG00000221932 OTTHUMG00000165939 uc001qbj.2 BC148521 NM_001037558 CCDS41729 Q6WQI6 "12971969|23548416" HEPN1 611641 +HGNC:4867 HERC1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "p532|p619" hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 1 WD repeat domain containing 362 1999-01-07 2012-02-23 2016-10-06 8925 ENSG00000103657 OTTHUMG00000172433 uc002amp.4 U50078 NM_003922 CCDS45277 Q15751 "8861955|9233772" MGI:2384589 RGD:1306366 HERC1 605109 460721 +HGNC:4868 HERC2 HECT and RLD domain containing E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 15q13.1 15q13.1 "jdf2|p528|D15F37S1" hect domain and RLD 2 Zinc fingers ZZ-type 91 1999-01-07 2012-02-23 2016-10-05 8924 ENSG00000128731 OTTHUMG00000129251 uc001zbj.5 AF071172 NM_004667 CCDS10021 O95714 9949213 MGI:103234 RGD:1307989 HERC2 605837 331681 +HGNC:4869 HERC2P1 hect domain and RLD 2 pseudogene 1 pseudogene pseudogene Approved 15q13 15q13 D15F37S2 1999-01-07 2014-11-19 8917 NG_005644 9730612 PGOHUM00000247018 +HGNC:4870 HERC2P2 hect domain and RLD 2 pseudogene 2 pseudogene pseudogene Approved 15q11.2 15q11.2 D15F37S3 1999-01-07 2015-02-02 400322 ENSG00000276550 OTTHUMG00000188262 AF041080 NR_002824 9730612 PGOHUM00000293127 +HGNC:4871 HERC2P3 hect domain and RLD 2 pseudogene 3 pseudogene pseudogene Approved 15q11.1-q11.2 15q11.1-q11.2 "D15F37S4|LOC283755" 1999-01-07 2016-10-11 283755 ENSG00000180229 OTTHUMG00000157175 AF041081 NG_008269 Q9BVR0 9730612 HERC2P3 PGOHUM00000246617 +HGNC:4872 HERC2P4 hect domain and RLD 2 pseudogene 4 pseudogene pseudogene Approved 16p11.2 16p11.2 D16F37S5 1999-01-07 2014-11-19 100289574 ENSG00000230267 OTTHUMG00000176563 NR_002827 PGOHUM00000262291 +HGNC:4873 HERC2P5 hect domain and RLD 2 pseudogene 5 pseudogene pseudogene Approved 16p11.2 16p11.2 D16F37S6 1999-01-07 2014-11-19 388254 ENSG00000260644 OTTHUMG00000176513 NG_005349 PGOHUM00000249076 +HGNC:4874 HERC2P6 hect domain and RLD 2 pseudogene 6 pseudogene pseudogene Approved 15q11.2 15q11.2 1999-01-07 2014-11-19 8918 NG_005348 PGOHUM00000247013 +HGNC:4875 HERC2P7 hect domain and RLD 2 pseudogene 7 pseudogene pseudogene Approved 15q11-q13 15q11-q13 1999-01-07 2014-11-18 100132101 ENSG00000259414 OTTHUMG00000171927 AF071178 NR_036470 PGOHUM00000247000 +HGNC:38747 HERC2P8 hect domain and RLD 2 pseudogene 8 pseudogene pseudogene Approved 16p11.2 16p11.2 2010-08-11 2014-11-19 440366 ENSG00000261599 OTTHUMG00000176452 NG_009637 PGOHUM00000248832 +HGNC:30495 HERC2P9 hect domain and RLD 2 pseudogene 9 pseudogene pseudogene Approved 15q13.1 15q13.1 FLJ59185 2010-08-11 2014-11-18 440248 ENSG00000206149 OTTHUMG00000167114 BC047911 NR_036443 PGOHUM00000247029 +HGNC:39056 HERC2P10 hect domain and RLD 2 pseudogene 10 pseudogene pseudogene Approved 15q13.2 15q13.2 2010-09-29 2014-11-18 390561 ENSG00000259845 OTTHUMG00000175658 NG_030002 PGOHUM00000247064 +HGNC:49882 HERC2P11 hect domain and RLD 2 pseudogene 11 pseudogene pseudogene Approved 15q13.1 15q13.1 2014-03-18 2014-03-18 100996738 ENSG00000261581 OTTHUMG00000175881 XM_011522272 PGOHUM00000246695 +HGNC:4876 HERC3 HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 KIAA0032 hect domain and RLD 3 1999-01-07 2012-02-23 2016-10-05 8916 ENSG00000138641 OTTHUMG00000150436 uc003hrw.2 D25215 NM_014606 "CCDS34028|CCDS82939" Q15034 10702688 MGI:1921248 RGD:1307803 HERC3 605200 +HGNC:24521 HERC4 HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "DKFZP564G092|KIAA1593" hect domain and RLD 4 2004-05-27 2012-02-23 2015-09-01 26091 ENSG00000148634 OTTHUMG00000018343 uc001jnh.5 AY221963 NM_015601 "CCDS7274|CCDS41533|CCDS60541|CCDS60542" Q5GLZ8 10997877 MGI:1914595 RGD:1310971 HERC4 609248 +HGNC:24368 HERC5 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 CEB1 hect domain and RLD 5 2004-06-09 2012-02-23 2015-02-16 51191 ENSG00000138646 OTTHUMG00000130953 uc003hrt.5 AB027289 NM_016323 CCDS3630 Q9UII4 10581175 HERC5 608242 +HGNC:26072 HERC6 HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 FLJ20637 hect domain and RLD 6 2004-06-03 2012-02-23 2016-10-05 55008 ENSG00000138642 OTTHUMG00000160983 uc011cdi.3 AF336798 XM_005263083 "CCDS47098|CCDS54777" Q8IVU3 MGI:1914388 RGD:1561739 HERC6 609249 +HGNC:13744 HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 protein-coding gene gene with protein product Approved 16q13 16q13 "KIAA0025|Mif1|HERP|SUP" homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1 2000-11-29 2016-03-21 2016-03-21 9709 ENSG00000051108 OTTHUMG00000133276 uc002eke.3 AB034989 NM_001010989 "CCDS10771|CCDS45492" Q15011 "10922362|10708769" MGI:1927406 RGD:620818 HERPUD1 608070 +HGNC:21915 HERPUD2 HERPUD family member 2 protein-coding gene gene with protein product Approved 7p14.2 07p14.2 FLJ22313 homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 2 2006-03-20 2006-03-20 2014-11-18 64224 ENSG00000122557 OTTHUMG00000128687 uc003tet.4 BC020264 NM_022373 CCDS5446 Q9BSE4 MGI:1915393 RGD:1307343 HERPUD2 +HGNC:5192 HES1 hes family bHLH transcription factor 1 protein-coding gene gene with protein product Approved 3q29 03q29 "FLJ20408|HES-1|Hes1|bHLHb39" HRY "hairy homolog (Drosophila)|hairy and enhancer of split 1, (Drosophila)" Basic helix-loop-helix proteins 420 1993-09-21 2003-01-10 2013-10-17 2016-10-05 3280 ENSG00000114315 OTTHUMG00000155984 uc003ftq.3 L19314 NM_005524 CCDS3305 Q14469 8020957 MGI:104853 RGD:62081 HES1 139605 +HGNC:16005 HES2 hes family bHLH transcription factor 2 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 bHLHb40 hairy and enhancer of split 2 (Drosophila) Basic helix-loop-helix proteins 420 2004-11-12 2013-10-17 2014-11-19 54626 ENSG00000069812 OTTHUMG00000000752 uc001amx.4 AL031848 NM_019089 CCDS30574 Q9Y543 15254753 MGI:1098624 RGD:62082 HES2 609970 +HGNC:26226 HES3 hes family bHLH transcription factor 3 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 bHLHb43 hairy and enhancer of split 3 (Drosophila) Basic helix-loop-helix proteins 420 2005-05-17 2013-10-17 2014-11-19 390992 ENSG00000173673 OTTHUMG00000001271 uc009vly.2 NM_001024598 CCDS41238 Q5TGS1 MGI:104877 RGD:621339 HES3 609971 +HGNC:24149 HES4 hes family bHLH transcription factor 4 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 bHLHb42 hairy and enhancer of split 4 (Drosophila) Basic helix-loop-helix proteins 420 2004-09-30 2013-10-17 2016-10-05 57801 ENSG00000188290 OTTHUMG00000040758 uc001aci.3 BC012351 NM_021170 "CCDS5|CCDS44034" Q9HCC6 "11260262|15254753" HES4 608060 +HGNC:19764 HES5 hes family bHLH transcription factor 5 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 bHLHb38 hairy and enhancer of split 5 (Drosophila) Basic helix-loop-helix proteins 420 2002-11-26 2013-10-17 2016-10-05 388585 ENSG00000197921 OTTHUMG00000000793 uc001ajn.3 AL139246 XM_005244751 CCDS41233 Q5TA89 7836401 MGI:104876 RGD:621340 HES5 607348 +HGNC:18254 HES6 hes family bHLH transcription factor 6 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 bHLHb41 hairy and enhancer of split 6 (Drosophila) Basic helix-loop-helix proteins 420 2002-04-03 2013-10-17 2014-11-19 55502 ENSG00000144485 OTTHUMG00000133340 uc002vxz.4 AB035179 NM_018645 "CCDS2527|CCDS46556|CCDS63180" Q96HZ4 10851137 MGI:1859852 RGD:1312047 HES6 610331 +HGNC:15977 HES7 hes family bHLH transcription factor 7 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 bHLHb37 bHLH factor Hes7 hairy and enhancer of split 7 (Drosophila) Basic helix-loop-helix proteins 420 2001-06-28 2013-10-17 2013-10-17 84667 ENSG00000179111 OTTHUMG00000178316 uc002gkc.4 AB049064 NM_032580 "CCDS42258|CCDS54085" Q9BYE0 11260262 MGI:2135679 RGD:1305914 HES7 608059 165577 +HGNC:4877 HESX1 HESX homeobox 1 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "RPX|ANF" homeobox, ES cell expressed 1 PRD class homeoboxes and pseudogenes 521 1998-11-19 2007-02-16 2014-11-19 8820 ENSG00000163666 OTTHUMG00000158597 uc003din.5 AF059734 XM_005265526 CCDS2881 Q9UBX0 "9373136|9620767|7876132" MGI:96071 RGD:1563858 HESX1 601802 8440 122398 +HGNC:4878 HEXA hexosaminidase subunit alpha protein-coding gene gene with protein product Approved 15q23 15q23 "Tay Sachs disease|GM2 gangliosidosis|beta-hexosaminidase subunit alpha" hexosaminidase A (alpha polypeptide) 2001-06-22 2016-01-22 2016-10-05 3073 ENSG00000213614 OTTHUMG00000133445 uc002aun.5 M13520 NM_000520 "CCDS10243|CCDS81905" P06865 "2952641|3013851" MGI:96073 RGD:2792 "Hexosaminidase A; Tay-Sachs Disease|http://www.hexdb.mcgill.ca|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/" HEXA 606869 122402 3.2.1.52 +HGNC:25810 HEXA-AS1 HEXA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q23 15q23 FLJ13315 C15orf34 "chromosome 15 open reading frame 34|HEXA antisense RNA 1 (non-protein coding)" 2005-10-20 2012-05-30 2012-08-15 2012-10-12 80072 ENSG00000260339 OTTHUMG00000177184 uc010ukp.1 NR_027262 Q9H8Q6 12477932 +HGNC:4879 HEXB hexosaminidase subunit beta protein-coding gene gene with protein product Approved 5q13.3 05q13.3 beta-hexosaminidase subunit beta hexosaminidase B (beta polypeptide) 2001-06-22 2016-01-22 2016-01-22 3074 ENSG00000049860 OTTHUMG00000102057 uc003kdf.4 M13519 NM_000521 "CCDS4022|CCDS78021" P07686 "2579389|3013851" MGI:96074 RGD:1307607 HEXB Locus Database|http://www.hexdb.mcgill.ca HEXB 606873 122404 3.2.1.52 +HGNC:26307 HEXDC hexosaminidase D protein-coding gene gene with protein product Approved 17q25.3 17q25.3 FLJ23825 hexosaminidase D, cytosolic hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing 2006-01-12 2016-03-30 2016-03-30 284004 ENSG00000169660 OTTHUMG00000178836 uc002kev.5 AK074405 NM_173620 "CCDS42402|CCDS82231" Q8WVB3 19040401 MGI:3605542 RGD:2302323 HEXDC 616864 3.2.1.52 +HGNC:43650 HEXDC-IT1 HEXDC intronic transcript 1 non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 HEXDC intronic transcript 1 (non-protein coding) 2011-12-19 2015-02-25 2015-02-25 100505970 ENSG00000279066 OTTHUMG00000178837 uc060lzv.1 AK129961 +HGNC:24953 HEXIM1 hexamethylene bisacetamide inducible 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "CLP-1|HIS1|MAQ1|EDG1" 2005-06-27 2016-06-10 2016-06-10 10614 ENSG00000186834 OTTHUMG00000180112 uc002iig.4 AB021179 NM_006460 CCDS11495 O94992 "12119119|12832472" MGI:2385923 RGD:1559851 HEXIM1 607328 +HGNC:28591 HEXIM2 hexamethylene bisacetamide inducible 2 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ32384 hexamethylene bis-acetamide inducible 2 2005-06-27 2016-03-31 2016-03-31 124790 ENSG00000168517 OTTHUMG00000180193 uc002iih.2 AK056946 NM_144608 CCDS11496 Q96MH2 12832472 MGI:1918309 RGD:1311635 HEXIM2 615695 +HGNC:4880 HEY1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "HESR-1|CHF2|HESR1|HRT-1|CHF-2|HERP2|bHLHb31" "hairy/enhancer-of-split related with YRPW motif 1|hes-related family bHLH transcription factor with YRPW motif 1" Basic helix-loop-helix proteins 420 1999-12-07 2016-02-23 2016-02-23 23462 ENSG00000164683 OTTHUMG00000164641 uc003ybm.3 AF151522 NM_012258 "CCDS6225|CCDS43749|CCDS64915" Q9Y5J3 "10415358|10403790" MGI:1341800 RGD:621403 HEY1 602953 +HGNC:4881 HEY2 hes related family bHLH transcription factor with YRPW motif 2 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "bHLHb32|HERP1|HESR2" "hairy/enhancer-of-split related with YRPW motif 2|hes-related family bHLH transcription factor with YRPW motif 2" Basic helix-loop-helix proteins 420 1999-10-12 2016-02-23 2016-10-05 23493 ENSG00000135547 OTTHUMG00000015512 uc003qad.4 AJ249545 XM_017010627 CCDS5131 Q9UBP5 10415358 MGI:1341884 RGD:621405 HEY2 604674 +HGNC:4882 HEYL hes related family bHLH transcription factor with YRPW motif-like protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "bHLHb33|HEY3|HESR3" hairy/enhancer-of-split related with YRPW motif 3 "hairy/enhancer-of-split related with YRPW motif-like|hes-related family bHLH transcription factor with YRPW motif-like" Basic helix-loop-helix proteins 420 1999-12-07 2016-02-23 2016-10-05 26508 ENSG00000163909 OTTHUMG00000000458 uc001cdp.4 BC006087 NM_014571 CCDS439 Q9NQ87 "10415358|10860664" MGI:1860511 RGD:1305022 HEYL 609034 +HGNC:4886 HFE hemochromatosis protein-coding gene gene with protein product Approved 6p22.2 06p22.2 HLA-H high Fe C1-set domain containing 591 1986-01-01 2016-10-12 3077 ENSG00000010704 OTTHUMG00000016348 uc003nfx.2 XM_011514543 "CCDS4578|CCDS4579|CCDS4580|CCDS4581|CCDS4582|CCDS47386|CCDS47387|CCDS54974|CCDS54975|CCDS75412" Q30201 3460331 MGI:109191 RGD:2793 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_748|http://www.lrg-sequence.org/LRG/LRG_748" HFE 613609 123411 +HGNC:4887 HFE2 hemochromatosis type 2 (juvenile) protein-coding gene gene with protein product Approved 1q21.1 01q21.1 "JH|HFE2A|RGMC|HJV|hemojuvelin|haemojuvelin" repulsive guidance molecule c 1999-05-25 2016-10-05 148738 ENSG00000168509 OTTHUMG00000013748 uc001eni.4 AY372521 NM_145277 "CCDS72877|CCDS72878|CCDS72879" Q6ZVN8 "10205270|14647275" MGI:1916835 RGD:1310195 HFE2 608374 123414 +HGNC:20193 HFM1 HFM1, ATP dependent DNA helicase homolog protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "MER3|FLJ39011|FLJ36760" SEC63D1 "SEC63 domain containing 1|HFM1, ATP-dependent DNA helicase homolog (S. cerevisiae)" RNA helicases 1168 2005-07-29 2016-06-08 2016-06-08 164045 ENSG00000162669 OTTHUMG00000010093 uc001doa.4 AB204867 NM_001017975 CCDS30769 A2PYH4 "14702039|17286053" MGI:3036246 RGD:1584010 HFM1 615684 400664 +HGNC:4892 HGD homogentisate 1,2-dioxygenase protein-coding gene gene with protein product Approved 3q13.33 03q13.33 HGO homogentisate oxidase AKU homogentisate 1,2-dioxygenase (homogentisate oxidase) 1993-07-26 2010-04-27 2016-10-05 3081 ENSG00000113924 OTTHUMG00000159441 uc003edw.4 XM_017006277 CCDS3000 Q93099 8188241 MGI:96078 RGD:1308757 HGD 607474 122408 1.13.11.5 +HGNC:4893 HGF hepatocyte growth factor protein-coding gene gene with protein product Approved 7q21.11 07q21.11 "SF|F-TCF|HGFB|HPTA" "hepatopoietin A|fibroblast-derived tumor cytotoxic factor|scatter factor|lung fibroblast-derived mitogen" DFNB39 "deafness, autosomal recessive 39|hepatocyte growth factor (hepapoietin A; scatter factor)" 1991-06-07 2016-02-03 2016-10-05 3082 ENSG00000019991 OTTHUMG00000023804 uc003uhl.4 NM_000601 "CCDS5597|CCDS47626|CCDS47627|CCDS47628|CCDS47629" P14210 "1837206|19576567" MGI:96079 RGD:2794 HGF 142409 201589 S01.976 +HGNC:4894 HGFAC HGF activator protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "HGFAP|HGFA" 1998-06-25 2016-10-05 3083 ENSG00000109758 OTTHUMG00000090281 uc003ghc.4 D14012 NM_001297439 "CCDS3369|CCDS75098" Q04756 "7683665|8226803" MGI:1859281 RGD:70909 HGFAC 604552 S01.228 3.4.21.- +HGNC:24161 HGH1 HGH1 homolog protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "FLJ40907|LOC51236|Brp16" brain protein 16 "C8orf30A|FAM203B|C8orf30B|FAM203A" "chromosome 8 open reading frame 30A|family with sequence similarity 203, member B|chromosome 8 open reading frame 30B|family with sequence similarity 203, member A|HGH1 homolog (S. cerevisiae)" 2005-10-06 2014-06-19 2015-07-03 2016-06-30 51236 ENSG00000235173 OTTHUMG00000165246 AF151022 NM_016458 CCDS6417 Q9BTY7 MGI:1930628 RGD:1359226 +HGNC:4897 HGS hepatocyte growth factor-regulated tyrosine kinase substrate protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "Hrs|ZFYVE8|Vps27" "Zinc fingers FYVE-type|ESCRT-0" "81|1115" 1999-01-07 2016-10-06 9146 ENSG00000185359 OTTHUMG00000178109 uc002kbg.4 D84064 NM_004712 CCDS11784 O14964 "9407053|9630564" MGI:104681 RGD:69225 HGS 604375 +HGNC:26527 HGSNAT heparan-alpha-glucosaminide N-acetyltransferase protein-coding gene gene with protein product Approved 8p11.21-p11.1 08p11.21-p11.1 "FLJ32731|HGNAT" TMEM76 transmembrane protein 76 2005-09-23 2006-08-16 2006-09-05 2016-10-11 138050 ENSG00000165102 OTTHUMG00000164102 uc003xpx.5 XM_372038 CCDS47852 Q68CP4 "17033958|16960811" MGI:1196297 RGD:1560755 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=HGSNAT HGSNAT 610453 122412 2.3.1.78 +HGNC:18270 HHAT hedgehog acyltransferase protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "FLJ10724|MART-2|MART2|Skn|ski|rasp|sit|GUP2" Membrane bound O-acyltransferases 1036 2004-09-15 2016-10-05 55733 ENSG00000054392 OTTHUMG00000036447 uc009xcx.3 AK001586 NM_018194 "CCDS1495|CCDS53471|CCDS53472|CCDS53473" Q5VTY9 11160356 MGI:2444681 RGD:1311746 HHAT 605743 404789 +HGNC:13242 HHATL hedgehog acyltransferase-like protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "KIAA1173|OACT3|MSTP002|MBOAT3" membrane bound O-acyltransferase domain containing 3 "C3orf3|GUP1" "chromosome 3 open reading frame 3|GUP1, glycerol uptake/transporter homolog (yeast)" Membrane bound O-acyltransferases 1036 2004-11-26 2007-02-06 2007-02-06 2016-10-05 57467 ENSG00000010282 OTTHUMG00000133043 uc003clx.3 AB042554 NM_020707 CCDS2704 Q9HCP6 11374908 MGI:1922020 RGD:1311911 HHATL 608116 +HGNC:42439 HHATL-AS1 HHATL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.1 03p22.1 HHATL antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-18 100874044 ENSG00000230970 OTTHUMG00000156258 uc062irl.1 +HGNC:4901 HHEX hematopoietically expressed homeobox protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "HEX|HOX11L-PEN" PRHX NKL subclass homeoboxes and pseudogenes 519 1998-08-04 2007-02-15 2015-08-25 3087 ENSG00000152804 OTTHUMG00000018762 uc001kid.4 Z21533 NM_002729 CCDS7423 Q03014 "8096636|8103988" MGI:96086 RGD:619932 HHEX 604420 8441 +HGNC:14866 HHIP hedgehog interacting protein protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "HIP|FLJ20992" hedgehog-interacting protein 2002-02-15 2001-11-29 2016-10-05 64399 ENSG00000164161 OTTHUMG00000161428 uc003ijs.3 AK024645 XM_005263178 CCDS3762 Q96QV1 "11435703|11731473" MGI:1341847 RGD:1564108 HHIP 606178 +HGNC:44182 HHIP-AS1 HHIP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q31.21 04q31.21 HHIP antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 646576 ENSG00000248890 OTTHUMG00000161429 uc062zxw.1 BC039450 NR_037595 +HGNC:19710 HHIPL1 HHIP like 1 protein-coding gene gene with protein product Approved 14q32 14q32 KIAA1822 "KIAA1822|HHIP-like 1" 2003-11-21 2008-01-16 2016-01-21 2016-01-21 84439 ENSG00000182218 OTTHUMG00000171509 uc010avs.4 AB058725 XM_041566 "CCDS9953|CCDS45162" Q96JK4 MGI:1919265 RGD:1311698 HHIPL1 +HGNC:25842 HHIPL2 HHIP like 2 protein-coding gene gene with protein product Approved 1q41 01q41 FLJ13840 KIAA1822L "KIAA1822-like|HHIP-like 2" 2005-04-22 2008-01-16 2016-01-21 2016-01-21 79802 ENSG00000143512 OTTHUMG00000037545 uc001hnh.2 BC007638 NM_024746 CCDS1530 Q6UWX4 12975309 MGI:1926022 RGD:1311317 HHIPL2 +HGNC:4904 HHLA1 HERV-H LTR-associating 1 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 PLA2L 1999-01-19 2016-10-05 10086 ENSG00000132297 OTTHUMG00000140390 uc064qho.1 AF110315 XR_017860 C9JL84 10329003 MGI:3615329 HHLA1 604109 +HGNC:4905 HHLA2 HERV-H LTR-associating 2 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 "B7H7|B7-H5|B7y" "V-set domain containing|C1-set domain containing" "590|591" 1999-09-07 2015-08-21 11148 ENSG00000114455 OTTHUMG00000159224 uc062mge.1 AF126162 NM_007072 "CCDS46883|CCDS63713|CCDS74975" Q9UM44 "10444326|23784006|22488247" RGD:11472061 HHLA2 604371 +HGNC:4906 HHLA3 HERV-H LTR-associating 3 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 1999-09-07 2014-11-19 11147 ENSG00000197568 OTTHUMG00000009346 uc001dfb.4 AF126164 NM_007071 "CCDS649|CCDS30752|CCDS30753" Q9XRX5 10444326 HHLA3 604372 +HGNC:4907 HIBADH 3-hydroxyisobutyrate dehydrogenase protein-coding gene gene with protein product Approved 7p15.2 07p15.2 NS5ATP1 1999-08-05 2016-10-05 11112 ENSG00000106049 OTTHUMG00000097035 uc003szf.4 AF529362 NM_152740 CCDS5414 P31937 MGI:1889802 RGD:708399 HIBADH 608475 1.1.1.31 +HGNC:4908 HIBCH 3-hydroxyisobutyryl-CoA hydrolase protein-coding gene gene with protein product Approved 2q32.2 02q32.2 3-hydroxyisobutyryl-Coenzyme A hydrolase 1999-12-07 2010-04-29 2016-10-05 26275 ENSG00000198130 OTTHUMG00000132673 uc002uru.3 U66669 NM_014362 "CCDS2304|CCDS46475" Q6NVY1 8824301 MGI:1923792 RGD:1308392 HIBCH 610690 159703 3.1.2.4 +HGNC:4909 HIC1 HIC ZBTB transcriptional repressor 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "ZBTB29|ZNF901" hypermethylated in cancer 1 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1996-03-19 2016-10-03 2016-10-03 3090 ENSG00000177374 OTTHUMG00000177635 uc010cjy.4 NM_006497 "CCDS42229|CCDS42230" Q14526 MGI:1338010 RGD:1307527 HIC1 603825 122417 132 +HGNC:18595 HIC2 HIC ZBTB transcriptional repressor 2 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "KIAA1020|HRG22|ZBTB30|ZNF907" hypermethylated in cancer 2 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2002-04-29 2016-10-03 2016-10-03 23119 ENSG00000169635 OTTHUMG00000150781 uc002zur.5 AB028943 XM_011530007 CCDS13789 Q96JB3 11554746 MGI:1929869 RGD:1305338 HIC2 607712 378 +HGNC:15736 HID1 HID1 domain containing protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "DMC1|HID-1" downregulated in multiple cancer 1 C17orf28 chromosome 17 open reading frame 28 2001-06-11 2012-10-10 2012-10-10 2014-11-18 283987 ENSG00000167861 OTTHUMG00000166490 uc002jmj.5 NM_030630 CCDS32726 Q8IV36 "11281419|21337012" MGI:2445087 RGD:1311422 605752 +HGNC:51181 HID1-AS1 HID1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q25.1 17q25.1 2014-08-01 2014-08-01 102723641 ENSG00000263586 OTTHUMG00000179217 NR_110878 +HGNC:4910 HIF1A hypoxia inducible factor 1 alpha subunit protein-coding gene gene with protein product Approved 14q23.2 14q23.2 "MOP1|HIF-1alpha|PASD8|HIF1|bHLHe78" hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) Basic helix-loop-helix proteins 420 1995-03-27 2016-02-15 2016-02-15 3091 ENSG00000100644 OTTHUMG00000140344 uc001xfq.3 U22431 NM_001530 "CCDS9753|CCDS9754|CCDS58324" Q16665 "8786149|9079689" MGI:106918 RGD:61928 HIF1A 603348 +HGNC:43014 HIF1A-AS1 HIF1A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q23.2 14q23.2 5'aHIF-1A HIF1A antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2011-09-16 2012-08-15 2014-06-02 100750246 ENSG00000258777 OTTHUMG00000171134 uc032bdp.1 CN270307 NR_047116 "21897117|24875884" 614528 +HGNC:43015 HIF1A-AS2 HIF1A antisense RNA 2 non-coding RNA RNA, long non-coding Approved 14q23.2 14q23.2 "3'aHIF-1A|aHIF" HIF1A antisense RNA 2 (non-protein coding) 2011-09-16 2012-08-15 2012-10-12 100750247 ENSG00000258667 OTTHUMG00000171135 uc059cgn.1 NR_045406 21897117 614529 +HGNC:17113 HIF1AN hypoxia inducible factor 1 alpha subunit inhibitor protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "FLJ20615|DKFZp762F1811|FLJ22027|FIH1" Peptide-aspartate beta-dioxygenase 2001-11-27 2016-02-15 2016-10-05 55662 ENSG00000166135 OTTHUMG00000018911 uc001krj.5 AK000622 NM_017902 CCDS7498 Q9NWT6 11641274 MGI:2442345 RGD:1308281 HIF1AN 606615 1.14.11.16 +HGNC:43016 HIF1AP1 hypoxia inducible factor 1 alpha subunit pseudogene 1 pseudogene pseudogene Approved 14q24.3 14q24.3 hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) pseudogene 1 2011-09-16 2016-02-15 2016-02-15 100874523 ENSG00000258978 OTTHUMG00000171769 NG_032553 PGOHUM00000247859 +HGNC:15825 HIF3A hypoxia inducible factor 3 alpha subunit protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "IPAS|MOP7|PASD7|bHLHe17" Basic helix-loop-helix proteins 420 2001-06-13 2016-02-15 2016-10-05 64344 ENSG00000124440 OTTHUMG00000141296 uc002peh.3 AK027725 XM_017027132 "CCDS12681|CCDS12682|CCDS42580" Q9Y2N7 "11573933|11734856" MGI:1859778 RGD:70332 HIF3A 609976 +HGNC:29527 HIGD1A HIG1 hypoxia inducible domain family member 1A protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "HIG1|DKFZP564K247|RCF1A" hypoxia inducible gene 1 "HIG1 domain family, member 1A|HIG1 hypoxia inducible domain family, member 1A" 2005-08-31 2015-11-18 2016-06-15 25994 ENSG00000181061 OTTHUMG00000190394 uc003cmb.5 BC009583 NM_014056 "CCDS43073|CCDS46806" Q9Y241 "22342701|25605899" MGI:1930666 RGD:620215 HIGD1A +HGNC:22804 HIGD1AP1 HIG1 hypoxia inducible domain family member 1A pseudogene 1 pseudogene pseudogene Approved 12q13.13 12q13.13 "HIGD1D|HIGD1DP" "HIG1 hypoxia inducible domain family, member 1D|HIG1 hypoxia inducible domain family, member 1D, pseudogene|HIG1 hypoxia inducible domain family, member 1A pseudogene 1" 2005-08-31 2011-08-10 2015-11-18 2015-11-18 100129086 ENSG00000258016 OTTHUMG00000170023 DQ052161 NG_009611 PGOHUM00000239792 +HGNC:42642 HIGD1AP2 HIG1 hypoxia inducible domain family member 1A pseudogene 2 pseudogene pseudogene Approved 13q31.1 13q31.1 HIG1 hypoxia inducible domain family, member 1A pseudogene 2 2011-08-10 2015-11-18 2015-11-18 100874450 ENSG00000237148 OTTHUMG00000017145 NG_032523 PGOHUM00000248648 +HGNC:42998 HIGD1AP3 HIG1 hypoxia inducible domain family member 1A pseudogene 3 pseudogene pseudogene Approved 5q35.2 05q35.2 HIG1 hypoxia inducible domain family, member 1A pseudogene 3 2011-09-16 2015-11-18 2015-11-18 100859920 ENSG00000248929 OTTHUMG00000163131 NG_031935 PGOHUM00000235839 +HGNC:43000 HIGD1AP4 HIG1 hypoxia inducible domain family member 1A pseudogene 4 pseudogene pseudogene Approved 2q36.1 02q36.1 HIG1 hypoxia inducible domain family, member 1A pseudogene 4 2011-09-16 2015-11-18 2015-11-18 100874435 ENSG00000233299 OTTHUMG00000153379 NG_032542 PGOHUM00000240538 +HGNC:42999 HIGD1AP5 HIG1 hypoxia inducible domain family member 1A pseudogene 5 pseudogene pseudogene Approved 11p15.1 11p15.1 HIG1 hypoxia inducible domain family, member 1A pseudogene 5 2011-09-16 2015-11-18 2015-11-18 100289300 ENSG00000255254 OTTHUMG00000166432 NG_031919 PGOHUM00000242605 +HGNC:43001 HIGD1AP6 HIG1 hypoxia inducible domain family member 1A pseudogene 6 pseudogene pseudogene Approved 8q21.13 08q21.13 HIG1 hypoxia inducible domain family, member 1A pseudogene 6 2011-09-16 2015-11-18 2016-10-05 100874436 ENSG00000253229 OTTHUMG00000164548 NG_032543 PGOHUM00000249717 +HGNC:43002 HIGD1AP7 HIG1 hypoxia inducible domain family member 1A pseudogene 7 pseudogene pseudogene Approved 7p14.1 07p14.1 HIG1 hypoxia inducible domain family, member 1A pseudogene 7 2011-09-16 2015-11-18 2015-11-18 100874437 NG_032544 PGOHUM00000233202 +HGNC:43003 HIGD1AP8 HIG1 hypoxia inducible domain family member 1A pseudogene 8 pseudogene pseudogene Approved 12p13.2 12p13.2 HIG1 hypoxia inducible domain family, member 1A pseudogene 8 2011-09-16 2015-11-18 2015-11-18 100874451 ENSG00000237303 OTTHUMG00000169118 NG_032545 PGOHUM00000239672 +HGNC:43004 HIGD1AP9 HIG1 hypoxia inducible domain family member 1A pseudogene 9 pseudogene pseudogene Approved 12q13.12 12q13.12 HIG1 hypoxia inducible domain family, member 1A pseudogene 9 2011-09-16 2015-11-18 2015-11-18 100874452 ENSG00000258104 OTTHUMG00000169589 NG_032901 PGOHUM00000239771 +HGNC:43005 HIGD1AP10 HIG1 hypoxia inducible domain family member 1A pseudogene 10 pseudogene pseudogene Approved 11q13.1 11q13.1 HIG1 hypoxia inducible domain family, member 1A pseudogene 10 2011-09-16 2015-11-18 2015-11-18 100287960 ENSG00000254455 OTTHUMG00000165609 NG_027526 PGOHUM00000242327 +HGNC:43006 HIGD1AP11 HIG1 hypoxia inducible domain family member 1A pseudogene 11 pseudogene pseudogene Approved 1p32.3 01p32.3 HIG1 hypoxia inducible domain family, member 1A pseudogene 11 2011-09-16 2015-11-18 2015-11-18 100874453 ENSG00000227644 OTTHUMG00000008922 NG_032547 PGOHUM00000244035 +HGNC:43007 HIGD1AP12 HIG1 hypoxia inducible domain family member 1A pseudogene 12 pseudogene pseudogene Approved 1p13.2 01p13.2 HIG1 hypoxia inducible domain family, member 1A pseudogene 12 2011-09-16 2015-11-18 2015-11-18 100130383 ENSG00000236012 OTTHUMG00000011170 NG_032000 PGOHUM00000244848 +HGNC:43008 HIGD1AP13 HIG1 hypoxia inducible domain family member 1A pseudogene 13 pseudogene pseudogene Approved 4q21.21 04q21.21 HIG1 hypoxia inducible domain family, member 1A pseudogene 13 2011-09-16 2015-11-18 2015-11-18 100874454 ENSG00000251019 OTTHUMG00000160899 NG_032548 PGOHUM00000245606 +HGNC:43009 HIGD1AP14 HIG1 hypoxia inducible domain family member 1A pseudogene 14 pseudogene pseudogene Approved 4q25 04q25 HIG1 hypoxia inducible domain family, member 1A pseudogene 14 2011-09-16 2015-11-18 2015-11-18 100874455 ENSG00000248785 OTTHUMG00000161106 NG_032549 PGOHUM00000246023 +HGNC:43010 HIGD1AP15 HIG1 hypoxia inducible domain family member 1A pseudogene 15 pseudogene pseudogene Approved 20p12.2 20p12.2 HIG1 hypoxia inducible domain family, member 1A pseudogene 15 2011-09-16 2015-11-18 2015-11-18 100289605 ENSG00000237005 OTTHUMG00000031865 NG_032775 PGOHUM00000247589 +HGNC:43011 HIGD1AP16 HIG1 hypoxia inducible domain family member 1A pseudogene 16 pseudogene pseudogene Approved 20q11.23 20q11.23 HIG1 hypoxia inducible domain family, member 1A pseudogene 16 2011-09-16 2015-11-18 2015-11-18 100874476 ENSG00000219608 OTTHUMG00000032366 NG_032550 PGOHUM00000247650 +HGNC:43012 HIGD1AP17 HIG1 hypoxia inducible domain family member 1A pseudogene 17 pseudogene pseudogene Approved 14q12 14q12 HIG1 hypoxia inducible domain family, member 1A pseudogene 17 2011-09-16 2015-11-18 2015-11-18 100874477 ENSG00000258886 OTTHUMG00000170584 NG_032551 +HGNC:43013 HIGD1AP18 HIG1 hypoxia inducible domain family member 1A pseudogene 18 pseudogene pseudogene Approved 8q21.11 08q21.11 HIG1 hypoxia inducible domain family, member 1A pseudogene 18 2011-09-16 2015-11-18 2015-11-18 100874456 ENSG00000253952 OTTHUMG00000164625 NG_032552 PGOHUM00000249395 +HGNC:24318 HIGD1B HIG1 hypoxia inducible domain family member 1B protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "CLST11240|CLST11240-15" "HIG1 domain family, member 1B|HIG1 hypoxia inducible domain family, member 1B" 2005-08-31 2015-11-18 2015-11-18 51751 ENSG00000131097 OTTHUMG00000179864 uc031rau.2 AB038021 NM_016438 CCDS11488 Q9P298 12477932 MGI:1922939 RGD:1306907 HIGD1B +HGNC:28044 HIGD1C HIG1 hypoxia inducible domain family member 1C protein-coding gene gene with protein product Approved 12q13.12 12q13.12 Gm921 "HIG1 domain family, member 1C|HIG1 hypoxia inducible domain family, member 1C" 2005-08-31 2015-11-18 2015-11-18 613227 ENSG00000214511 OTTHUMG00000169488 uc010smw.3 DQ029494 NM_001109619 CCDS44882 A8MV81 MGI:2685767 RGD:7641479 HIGD1C +HGNC:28311 HIGD2A HIG1 hypoxia inducible domain family member 2A protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "MGC2198|RCF1B" "HIG1 domain family, member 2A|HIG1 hypoxia inducible domain family, member 2A" 2005-08-31 2015-11-18 2016-06-15 192286 ENSG00000146066 OTTHUMG00000130657 uc003meg.4 BC007502 NM_138820 CCDS4401 Q9BW72 22342701 MGI:1914294 RGD:1309691 HIGD2A +HGNC:26984 HIGD2B HIG1 hypoxia inducible domain family member 2B other unknown Approved 15q24.1 15q24.1 HIGD2BP "HIG1 hypoxia inducible domain family, member 2B (pseudogene)|HIG1 hypoxia inducible domain family, member 2B" 2005-08-31 2009-03-18 2015-11-18 2015-11-18 123346 ENSG00000175202 OTTHUMG00000172776 uc059lck.1 BC040890 NM_001017925 Q4VC39 +HGNC:26938 HIKESHI Hikeshi, heat shock protein nuclear import factor protein-coding gene gene with protein product Approved 11q14.2 11q14.2 "HSPC138|HSPC179|OPI10" C11orf73 chromosome 11 open reading frame 73 2006-03-16 2016-06-07 2016-06-07 2016-06-07 51501 ENSG00000149196 OTTHUMG00000167212 uc001pbu.4 BC015991 NM_016401 CCDS8275 Q53FT3 "11042152|22541429" MGI:96738 RGD:1359455 614908 +HGNC:28859 HILPDA hypoxia inducible lipid droplet associated protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "FLJ21076|HIG-2|HIG2" hypoxia inducible gene 2 C7orf68 "chromosome 7 open reading frame 68|hypoxia inducible lipid droplet-associated" 2009-03-18 2011-11-02 2016-02-03 2016-02-03 29923 ENSG00000135245 OTTHUMG00000157712 uc003vne.5 AF144755 NM_013332 CCDS5802 Q9Y5L2 "10690527|15930302" MGI:1916823 RGD:2319900 +HGNC:30616 HILS1 histone linker H1 domain, spermatid-specific 1 (pseudogene) pseudogene pseudogene Approved 17q21.33 17q21.33 histone linker H1 domain, spermatid-specific 1 2005-12-16 2016-01-06 2016-01-06 373861 ENSG00000188662 OTTHUMG00000162025 AY286318 NR_024193 P60008 12920187 MGI:2136691 RGD:1585185 608101 +HGNC:17850 HINFP histone H4 transcription factor protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "DKFZP434F162|HiNF-P|ZNF743" histone nuclear factor P MIZF "MBD2-interacting zinc finger 1|MBD2-interacting zinc finger" Zinc fingers C2H2-type 28 2006-02-02 2009-01-22 2009-01-22 2014-11-19 25988 ENSG00000172273 OTTHUMG00000166168 uc001pvq.4 AL080201 NM_015517 "CCDS8414|CCDS58188" Q9BQA5 11553631 MGI:2429620 RGD:1311492 HINFP 607099 +HGNC:4912 HINT1 histidine triad nucleotide binding protein 1 protein-coding gene gene with protein product Approved 5q23.3 05q23.3 PKCI-1 "PRKCNH1|HINT" histidine triad nucleotide-binding protein 1996-05-15 2002-03-08 2001-11-28 2016-10-05 3094 ENSG00000169567 OTTHUMG00000128995 uc003kve.5 BC007090 NM_005340 CCDS4147 P49773 8812426 MGI:1321133 RGD:1593411 HINT1 601314 327364 +HGNC:18467 HINT1P1 histidine triad nucleotide binding protein 1 pseudogene 1 pseudogene pseudogene Approved 7q34 07q34 HINTP1 2010-03-30 2010-03-30 2014-11-19 730647 ENSG00000231531 OTTHUMG00000152696 NG_009195 12119013 PGOHUM00000302460 +HGNC:38049 HINT1P2 histidine triad nucleotide binding protein 1 pseudogene 2 pseudogene pseudogene Approved 7q21.3 07q21.3 2014-10-16 2010-03-30 2014-11-19 100233146 ENSG00000271159 OTTHUMG00000184514 NG_009196 PGOHUM00000302348 +HGNC:18344 HINT2 histidine triad nucleotide binding protein 2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 2002-03-07 2016-10-05 84681 ENSG00000137133 OTTHUMG00000019886 uc003zyh.4 AY033094 NM_032593 CCDS6594 Q9BX68 MGI:1916167 RGD:1308910 HINT2 609997 +HGNC:50311 HINT2P1 histidine triad nucleotide binding protein 2 pseudogene 1 pseudogene pseudogene Approved 3p26.3 03p26.3 2014-04-07 2014-04-07 101929471 ENSG00000230398 OTTHUMG00000154863 PGOHUM00000237924 +HGNC:18468 HINT3 histidine triad nucleotide binding protein 3 protein-coding gene gene with protein product Approved 6q22.32 06q22.32 FLJ33126 2002-04-10 2016-10-05 135114 ENSG00000111911 OTTHUMG00000015514 uc003qal.5 AK057688 NM_138571 CCDS5133 Q9NQE9 11805111 MGI:1914097 RGD:621603 HINT3 609998 +HGNC:4913 HIP1 huntingtin interacting protein 1 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 ILWEQ 1997-08-28 2015-09-11 3092 ENSG00000127946 OTTHUMG00000156050 uc003uds.4 AF052288 NM_005338 "CCDS34669|CCDS59060" O00291 "9140394|9147654" MGI:1099804 RGD:620305 HIP1 601767 +HGNC:18415 HIP1R huntingtin interacting protein 1 related protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "KIAA0655|HIP3|HIP12|FLJ14000|ILWEQ" 2006-01-23 2016-10-05 9026 ENSG00000130787 OTTHUMG00000168765 uc001udj.2 AB013384 NM_003959 CCDS31922 O75146 16415883 MGI:1352504 RGD:621615 HIP1R 605613 +HGNC:19006 HIPK1 homeodomain interacting protein kinase 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "KIAA0630|Myak|MGC26642|Nbak2|MGC33446|MGC33548" 2004-01-29 2016-10-05 204851 ENSG00000163349 OTTHUMG00000011983 uc001een.4 AB089957 NM_198268 "CCDS867|CCDS868|CCDS869|CCDS41370" Q86Z02 MGI:1314873 RGD:1304941 HIPK1 608003 objectId:2033 +HGNC:50576 HIPK1-AS1 HIPK1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p13.2 01p13.2 2014-05-21 2014-05-21 101928846 ENSG00000235527 OTTHUMG00000011982 NR_110726 +HGNC:14402 HIPK2 homeodomain interacting protein kinase 2 protein-coding gene gene with protein product Approved 7q34 07q34 homeodomain-interacting protein kinase 2 2001-01-12 2001-11-29 2015-09-01 28996 ENSG00000064393 OTTHUMG00000157704 uc003vvf.5 AF208291 NM_022740 "CCDS75666|CCDS75667" Q9H2X6 11120354 MGI:1314872 RGD:1309349 HIPK2 606868 objectId:2034 +HGNC:4915 HIPK3 homeodomain interacting protein kinase 3 protein-coding gene gene with protein product Approved 11p13 11p13 "PKY|DYRK6|YAK1|FIST3" homeodomain-interacting protein kinase 3 1999-05-25 2001-11-29 2015-09-11 10114 ENSG00000110422 OTTHUMG00000132269 uc001mum.3 AF004849 NM_005734 "CCDS7884|CCDS41634" Q9H422 "9373137|9748262" MGI:1314882 RGD:619884 HIPK3 604424 objectId:2035 +HGNC:19007 HIPK4 homeodomain interacting protein kinase 4 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ32818 2004-01-29 2014-11-19 147746 ENSG00000160396 OTTHUMG00000182598 uc002onp.3 BC034501 NM_144685 CCDS12555 Q8NE63 MGI:2685008 RGD:1307541 HIPK4 611712 objectId:2036 +HGNC:4916 HIRA histone cell cycle regulator protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "DGCR1|TUP1" DiGeorge critical region gene 1 TUPLE1 "HIR (histone cell cycle regulation defective) homolog A (S. cerevisiae)|HIR histone cell cycle regulation defective homolog A (S. cerevisiae)" WD repeat domain containing 362 1994-04-21 2013-05-03 2016-10-05 7290 ENSG00000100084 OTTHUMG00000150134 uc002zpf.2 X75296 NM_003325 CCDS13759 P54198 "8111380|7633437|9731536" MGI:99430 RGD:1584950 HIRA 600237 286557 +HGNC:44916 HIRAP1 histone cell cycle regulator pseudogene 1 pseudogene pseudogene Approved 10p12.1 10p12.1 HIR histone cell cycle regulation defective homolog A pseudogene 1 2012-12-18 2013-05-03 2016-08-15 100422545 ENSG00000271563 OTTHUMG00000184668 NG_025478 PGOHUM00000290072 +HGNC:4917 HIRIP3 HIRA interacting protein 3 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 HIRA-interacting protein 3 1999-09-28 2001-11-29 2016-10-05 8479 ENSG00000149929 OTTHUMG00000132118 uc002dve.4 AJ223351 NM_003609 "CCDS10664|CCDS58449" Q9BW71 9710638 MGI:2142364 RGD:1306463 HIRIP3 603365 +HGNC:4715 HIST1H1A histone cluster 1 H1 family member a protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H1.1|H1a" H1F1 "H1 histone family, member 1|histone 1, H1a|histone cluster 1, H1a" Histones 864 1997-08-29 2003-02-21 2016-08-15 2016-10-05 3024 ENSG00000124610 OTTHUMG00000016413 uc003nfo.4 AF531299 NM_005325 CCDS4569 Q02539 "2759094|12408966" MGI:1931523 RGD:1305706 HIST1H1A 142709 +HGNC:4719 HIST1H1B histone cluster 1 H1 family member b protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H1.5|H1b|H1s-3" H1F5 "H1 histone family, member 5|histone 1, H1b|histone cluster 1, H1b" Histones 864 1997-08-29 2003-02-14 2016-08-15 2016-08-15 3009 ENSG00000184357 OTTHUMG00000016139 uc003njx.4 AF531304 NM_005322 CCDS4635 P16401 "9031620|9119399|12408966" MGI:1861461 RGD:1590638 HIST1H1B 142711 +HGNC:4716 HIST1H1C histone cluster 1 H1 family member c protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H1.2|H1s-1|H1c" H1F2 "H1 histone family, member 2|histone 1, H1c|histone cluster 1, H1c" Histones 864 2001-06-22 2003-02-21 2016-08-15 2016-10-05 3006 ENSG00000187837 OTTHUMG00000016140 uc003nfw.4 X57129 NM_005319 CCDS4577 P16403 "2759094|12408966" MGI:1931526 RGD:1587893 HIST1H1C 142710 +HGNC:4717 HIST1H1D histone cluster 1 H1 family member d protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H1.3|H1d|H1s-2" H1F3 "H1 histone family, member 3|histone 1, H1d|histone cluster 1, H1d" Histones 864 2001-06-22 2003-02-21 2016-08-15 2016-10-05 3007 ENSG00000124575 OTTHUMG00000014432 uc003nhd.4 M60747 NM_005320 CCDS4597 P16402 "1916825|12408966" MGI:107502 RGD:1585568 HIST1H1D 142210 +HGNC:4718 HIST1H1E histone cluster 1 H1 family member e protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H1.4|H1e|H1s-4" H1F4 "H1 histone family, member 4|histone 1, H1e|histone cluster 1, H1e" Histones 864 1988-08-31 2003-02-21 2016-08-15 2016-10-05 3008 ENSG00000168298 OTTHUMG00000014422 uc003ngq.5 M60748 NM_005321 CCDS4586 P10412 "1916825|12408966" MGI:1931527 RGD:2776 HIST1H1E 142220 +HGNC:19163 HIST1H1PS1 histone cluster 1 H1 pseudogene 1 pseudogene pseudogene Approved 6p22.2 06p22.2 "dJ34B20.16|FLJ39701|H1F6P" histone 1, H1, pseudogene 1 Histones 864 2003-12-09 2016-08-15 2016-10-05 387325 ENSG00000216331 OTTHUMG00000014431 NG_029660 +HGNC:4770 HIST1H1PS2 histone cluster 1 H1 pseudogene 2 pseudogene pseudogene Approved 6p22.1 06p22.1 pH3/e H3FEP "H3 histone family, member E, pseudogene|histone 1, H1, pseudogene 2" Histones 864 1998-10-05 2003-12-10 2016-08-15 2016-08-15 10338 ENSG00000224447 OTTHUMG00000036301 X67080 NG_029342 9031620 +HGNC:4720 HIST1H1T histone cluster 1 H1 family member t protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H1t H1FT "H1 histone family, member T (testis-specific)|histone 1, H1t|histone cluster 1, H1t" Histones 864 1997-08-29 2003-02-21 2016-08-15 2016-10-05 3010 ENSG00000187475 OTTHUMG00000014430 uc003ngj.4 M60094 NM_005323 CCDS34349 P22492 "8175896|12408966" MGI:1888530 RGD:2778 HIST1H1T 142712 +HGNC:18729 HIST1H2AA histone cluster 1 H2A family member a protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "bA317E16.2|H2AFR" "H2A histone family, member R|histone 1, H2aa|histone cluster 1, H2aa" Histones 864 2003-02-07 2016-08-15 2016-08-15 221613 ENSG00000164508 OTTHUMG00000014407 uc003nfc.4 AY131982 NM_170745 CCDS4562 Q96QV6 12408966 MGI:2448285 RGD:3854 HIST1H2AA 613499 +HGNC:4734 HIST1H2AB histone cluster 1 H2A family member b protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H2A/m H2AFM "H2A histone family, member M|histone 1, H2ab|histone cluster 1, H2ab" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8335 ENSG00000278463 OTTHUMG00000014420 uc003nft.2 X00089 NM_003513 CCDS4574 P04908 "9439656|9119399|12408966" MGI:2448293 RGD:1589461 HIST1H2AB 602795 +HGNC:4733 HIST1H2AC histone cluster 1 H2A family member c protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H2AFL "H2A histone family, member L|histone 1, H2ac|histone cluster 1, H2ac" Histones 864 1998-09-07 2003-02-21 2016-08-15 2016-10-05 8334 ENSG00000180573 OTTHUMG00000014428 uc003ngm.4 Z80778 NM_003512 CCDS4585 Q93077 "9119399|12408966" MGI:2448302 HIST1H2AC 602794 +HGNC:4729 HIST1H2AD histone cluster 1 H2A family member d protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H2A/g|H2A.3" H2AFG "H2A histone family, member G|histone 1, H2ad|histone cluster 1, H2ad" Histones 864 1997-08-29 2003-02-14 2016-08-15 2016-10-05 3013 ENSG00000196866 OTTHUMG00000014437 uc003ngw.5 Z80776 NM_021065 CCDS4591 P20671 "9119399|12408966" MGI:2448306 HIST1H2AD 602792 +HGNC:4724 HIST1H2AE histone cluster 1 H2A family member e protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H2A/a|H2A.1" H2AFA "H2A histone family, member A|histone 1, H2ae|histone cluster 1, H2ae" Histones 864 1997-08-29 2003-02-21 2016-08-15 2016-08-15 3012 ENSG00000277075 OTTHUMG00000014440 uc003nha.3 M60752 NM_021052 CCDS4595 P04908 "9119399|1916825|12408966" MGI:2448457 HIST1H2AE 602786 +HGNC:4737 HIST1H2AG histone cluster 1 H2A family member g protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "pH2A/f|H2A/p|H2A.1b" H2AFP "H2A histone family, member P|histone 1, H2ag|histone cluster 1, H2ag" Histones 864 1998-10-05 2003-02-21 2016-08-15 2016-08-15 8969 ENSG00000196787 OTTHUMG00000014469 uc003niw.4 L19778 NM_021064 CCDS4619 P0C0S8 "8179821|12408966" MGI:2448300 HIST1H2AG 615012 +HGNC:13671 HIST1H2AH histone cluster 1 H2A family member h protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H2AFALii|dJ86C11.1|H2A/S" "histone 1, H2ah|histone cluster 1, H2ah" Histones 864 2003-02-19 2016-08-15 2016-08-15 85235 ENSG00000274997 OTTHUMG00000014468 uc003niz.5 AY131988 NM_080596 CCDS4622 Q96KK5 12408966 MGI:2448295 RGD:1593006 HIST1H2AH 615013 +HGNC:4725 HIST1H2AI histone cluster 1 H2A family member i protein-coding gene gene with protein product Approved 6p22.1 06p22.1 H2A/c H2AFC "H2A histone family, member C|histone 1, H2ai|histone cluster 1, H2ai" Histones 864 1998-08-27 2003-02-28 2016-08-15 2016-08-15 8329 ENSG00000196747 OTTHUMG00000014484 uc063mkb.1 Z83742 NM_003509 CCDS4626 P0C0S8 "9439656|12408966" HIST1H2AI 602787 +HGNC:4727 HIST1H2AJ histone cluster 1 H2A family member j protein-coding gene gene with protein product Approved 6p22.1 06p22.1 H2A/E H2AFE "H2A histone family, member E|histone 1, H2aj|histone cluster 1, H2aj" Histones 864 2003-02-11 2003-02-28 2016-08-15 2016-08-15 8331 ENSG00000276368 OTTHUMG00000014486 uc003njn.2 Z83736 NM_021066 CCDS4628 Q99878 "9439656|12408966" MGI:2448309 HIST1H2AJ 602791 +HGNC:4726 HIST1H2AK histone cluster 1 H2A family member k protein-coding gene gene with protein product Approved 6p22.1 06p22.1 H2A/d H2AFD "H2A histone family, member D|histone 1, H2ak|histone cluster 1, H2ak" Histones 864 1998-08-27 2003-02-28 2016-08-15 2016-08-15 8330 ENSG00000275221 OTTHUMG00000016382 uc003njs.4 Z83739 NM_003510 CCDS4632 P0C0S8 "9439656|12408966" MGI:2448287 RGD:1564767 HIST1H2AK 602788 +HGNC:4730 HIST1H2AL histone cluster 1 H2A family member l protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H2A/i|dJ193B12.9" H2AFI "H2A histone family, member I|histone 1, H2al|histone cluster 1, H2al" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8332 ENSG00000276903 OTTHUMG00000014492 uc003njw.4 X83549 NM_003511 CCDS4634 P0C0S8 "9439656|9031620|12408966" MGI:2448290 RGD:1594367 HIST1H2AL 602793 +HGNC:4735 HIST1H2AM histone cluster 1 H2A family member m protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H2A/n|H2A.1" H2AFN "H2A histone family, member N|histone 1, H2am|histone cluster 1, H2am" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8336 ENSG00000278677 OTTHUMG00000014494 uc003nkb.2 X57138 NM_003514 CCDS4639 P0C0S8 "1768865|9439656|12408966" MGI:2448289 HIST1H2AM 602796 +HGNC:18720 HIST1H2APS1 histone cluster 1 H2A pseudogene 1 pseudogene pseudogene Approved 6p22.2 06p22.2 "bA317E16.5|H2AFSP" "histone 1, H2a, pseudogene 1|histone cluster 1, H2a, pseudogene 1" Histones 864 2003-12-09 2016-08-15 2016-08-15 387319 ENSG00000216436 OTTHUMG00000014405 NR_045125 +HGNC:18804 HIST1H2APS2 histone cluster 1 H2A pseudogene 2 pseudogene pseudogene Approved 6p22.2 06p22.2 "dJ139G21.2|H2A/T" H2AFTP "H2A histone family, member T, pseudogene|histone 1, H2a, pseudogene 2|histone cluster 1, H2a, pseudogene 2" Histones 864 2003-03-11 2003-12-05 2016-08-15 2016-08-15 85303 ENSG00000242387 OTTHUMG00000187599 AF098457 NG_002685 +HGNC:18805 HIST1H2APS3 histone cluster 1 H2A pseudogene 3 pseudogene pseudogene Approved 6p22.2 06p22.2 "dJ34B20.8|H2AFUP" "histone 1, H2a, pseudogene 3|histone cluster 1, H2a, pseudogene 3" Histones 864 2003-12-09 2016-08-15 2016-10-06 387323 ENSG00000218281 OTTHUMG00000014439 NG_029661 +HGNC:4732 HIST1H2APS4 histone cluster 1 H2A pseudogene 4 pseudogene pseudogene Approved 6p22.2 06p22.2 "pH2A/k|dJ34B20.2" "H2AFK|H2AFKP" "H2A histone family, member K, pseudogene|histone 1, H2a, pseudogene 4|histone cluster 1, H2a, pseudogene 4" Histones 864 1998-08-27 2003-12-10 2016-08-15 2016-10-06 8333 ENSG00000218690 OTTHUMG00000014438 Z80777 NG_000876 9119399 PGOHUM00000301272 +HGNC:4728 HIST1H2APS5 histone cluster 1 H2A pseudogene 5 pseudogene pseudogene Approved 6p22.2 06p22.2 pH2A/f H2AFFP "H2A histone family, member F, pseudogene|histone 1, H2a, pseudogene 5|histone cluster 1, H2a, pseudogene 5" Histones 864 1998-10-05 2003-12-10 2016-08-15 2016-08-22 10341 ENSG00000234816 OTTHUMG00000037055 X57131 NG_029344 8227173 PGOHUM00000301689 +HGNC:42647 HIST1H2APS6 histone cluster 1 H2A pseudogene 6 pseudogene pseudogene Approved 13q13.3 13q13.3 "HIST1H2A pseudogene 6|histone cluster 1, H2a, pseudogene 6" 2011-08-10 2016-08-15 2016-08-15 100509927 ENSG00000223383 OTTHUMG00000016734 NG_029174 PGOHUM00000248361 +HGNC:18730 HIST1H2BA histone cluster 1 H2B family member a protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "bA317E16.3|STBP|TSH2B|H2BFU" "H2B histone family, member U, (testis-specific)|histone 1, H2ba|histone cluster 1, H2ba" Histones 864 2003-02-07 2016-08-15 2016-08-15 255626 ENSG00000146047 OTTHUMG00000014408 uc003nfd.4 AF397301 NM_170610 CCDS4563 Q96A08 "12408966|12213818" MGI:2448375 RGD:3855 HIST1H2BA 609904 +HGNC:4751 HIST1H2BB histone cluster 1 H2B family member b protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H2B/f H2BFF "H2B histone family, member F|histone 1, H2bb|histone cluster 1, H2bb" Histones 864 1997-09-03 2003-02-14 2016-08-15 2016-08-15 3018 ENSG00000276410 OTTHUMG00000014421 uc003nfu.4 AF531285 NM_021062 CCDS4575 P33778 "8227173|12408966" MGI:2448377 RGD:7729692 HIST1H2BB 602803 +HGNC:4757 HIST1H2BC histone cluster 1 H2B family member c protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H2B/l|H2B.1" H2BFL "H2B histone family, member L|histone 1, H2bc|histone cluster 1, H2bc" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-10-05 8347 ENSG00000180596 OTTHUMG00000014425 uc003ngk.5 Z80783 NM_003526 CCDS4584 P62807 "9119399|12408966" MGI:2448386 RGD:1305011 HIST1H2BC 602847 +HGNC:4747 HIST1H2BD histone cluster 1 H2B family member d protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H2B/b H2BFB "H2B histone family, member B|histone 1, H2bd|histone cluster 1, H2bd" Histones 864 1997-09-03 2003-02-14 2016-08-15 2016-10-05 3017 ENSG00000158373 OTTHUMG00000014426 uc003ngs.4 M60751 NM_021063 CCDS4587 P58876 "1916825|12408966" MGI:1925553 HIST1H2BD 602799 +HGNC:4753 HIST1H2BE histone cluster 1 H2B family member e protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H2B/h|H2B.h" H2BFH "H2B histone family, member H|histone 1, H2be|histone cluster 1, H2be" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8344 ENSG00000274290 OTTHUMG00000014427 uc003ngt.5 Z80780 NM_003523 CCDS4588 P62807 "9119399|12408966" MGI:2448403 HIST1H2BE 602805 +HGNC:4752 HIST1H2BF histone cluster 1 H2B family member f protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H2B/g H2BFG "H2B histone family, member G|histone 1, H2bf|histone cluster 1, H2bf" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8343 ENSG00000277224 OTTHUMG00000014445 uc003ngx.5 Z80779 NM_003522 CCDS4592 P62807 "9119399|12408966" MGI:2448380 RGD:1591796 HIST1H2BF 602804 +HGNC:4746 HIST1H2BG histone cluster 1 H2B family member g protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H2B/a|H2B.1A" H2BFA "H2B histone family, member A|histone 1, H2bg|histone cluster 1, H2bg" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8339 ENSG00000273802 OTTHUMG00000014446 uc003ngz.5 M60750 NM_003518 CCDS4594 P62807 "1916825|12408966" MGI:2448383 RGD:1308088 HIST1H2BG 602798 +HGNC:4755 HIST1H2BH histone cluster 1 H2B family member h protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H2B/j H2BFJ "H2B histone family, member J|histone 1, H2bh|histone cluster 1, H2bh" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8345 ENSG00000275713 OTTHUMG00000014447 uc003nhh.5 Z80781 NM_003524 CCDS4601 Q93079 "9119399|12408966" "MGI:3702051|MGI:3710645" RGD:2325039 HIST1H2BH 602806 +HGNC:4756 HIST1H2BI histone cluster 1 H2B family member i protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H2B/k H2BFK "H2B histone family, member K|histone 1, H2bi|histone cluster 1, H2bi" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8346 ENSG00000278588 OTTHUMG00000014448 uc003nhk.4 Z80782 NM_003525 CCDS4603 P62807 "9119399|12408966" MGI:1915274 HIST1H2BI 602807 +HGNC:4761 HIST1H2BJ histone cluster 1 H2B family member j protein-coding gene gene with protein product Approved 6p22.1 06p22.1 H2B/r H2BFR "H2B histone family, member R|histone 1, H2bj|histone cluster 1, H2bj" Histones 864 1998-10-05 2003-02-21 2016-08-15 2016-08-15 8970 ENSG00000124635 OTTHUMG00000014470 uc063miy.1 X00088 NM_021058 CCDS4618 P06899 "6647026|12408966" MGI:2448415 RGD:1562346 HIST1H2BJ 615044 +HGNC:13954 HIST1H2BK histone cluster 1 H2B family member k protein-coding gene gene with protein product Approved 6p22.1 06p22.1 H2BFAiii H2BFT "H2B histone family, member T|histone 1, H2bk|histone cluster 1, H2bk" Histones 864 2002-11-18 2003-02-28 2016-08-15 2016-08-15 85236 ENSG00000197903 OTTHUMG00000014473 uc063mja.1 AJ223352 NM_080593 CCDS4621 O60814 12408966 MGI:2448399 RGD:1593016 HIST1H2BK 615045 +HGNC:4748 HIST1H2BL histone cluster 1 H2B family member l protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H2B/c|dJ97D16.4" H2BFC "H2B histone family, member C|histone 1, H2bl|histone cluster 1, H2bl" Histones 864 1998-08-27 2003-02-28 2016-08-15 2016-08-15 8340 ENSG00000185130 OTTHUMG00000014485 uc003njl.4 Z83740 NM_003519 CCDS4625 Q99880 "9439656|12408966" MGI:2448388 HIST1H2BL 602800 +HGNC:4750 HIST1H2BM histone cluster 1 H2B family member m protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H2B/e|dJ160A22.3" H2BFE "H2B histone family, member E|histone 1, H2bm|histone cluster 1, H2bm" Histones 864 1998-08-27 2003-02-28 2016-08-15 2016-08-15 8342 ENSG00000273703 OTTHUMG00000014489 uc003njo.4 Z83738 NM_003521 CCDS4629 Q99879 "9439656|12408966" MGI:2448407 HIST1H2BM 602802 +HGNC:4749 HIST1H2BN histone cluster 1 H2B family member n protein-coding gene gene with protein product Approved 6p22.1 06p22.1 H2B/d H2BFD "H2B histone family, member D|histone 1, H2bn|histone cluster 1, H2bn" Histones 864 1998-08-27 2003-02-28 2016-08-15 2016-08-15 8341 ENSG00000233822 OTTHUMG00000016397 uc063mkf.1 Z83336 NM_003520 CCDS4633 Q99877 "9439656|12408966" MGI:2448404 HIST1H2BN 602801 +HGNC:4758 HIST1H2BO histone cluster 1 H2B family member o protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H2B/n|H2B.2" H2BFN "H2B histone family, member N|histone 1, H2bo|histone cluster 1, H2bo" Histones 864 1998-08-27 2003-02-21 2016-08-15 2016-08-15 8348 ENSG00000274641 OTTHUMG00000014493 uc003nkc.2 X57138 NM_003527 CCDS4640 P23527 "1768865|12408966" MGI:2448409 RGD:1311828 HIST1H2BO 602808 +HGNC:18719 HIST1H2BPS1 histone cluster 1 H2B pseudogene 1 pseudogene pseudogene Approved 6p22.2 06p22.2 "bA317E16.4|H2BFVP" "histone 1, H2b, pseudogene 1|histone cluster 1, H2b, pseudogene 1" Histones 864 2003-12-09 2016-08-15 2016-08-15 100288742 ENSG00000178762 OTTHUMG00000014406 NG_027974 PGOHUM00000260110 +HGNC:4754 HIST1H2BPS2 histone cluster 1 H2B pseudogene 2 pseudogene pseudogene Approved 6p22.1 06p22.1 pH2B/i H2BFIP "H2B histone family, member I, pseudogene|histone 1, H2b, pseudogene 2|histone cluster 1, H2b, pseudogene 2" Histones 864 1998-10-05 2003-12-10 2016-08-15 2016-08-15 10340 ENSG00000217646 OTTHUMG00000014491 X83547 NG_029324 9031620 PGOHUM00000243098 +HGNC:42633 HIST1H2BPS3 histone cluster 1 H2B pseudogene 3 pseudogene pseudogene Approved 13q12.11 13q12.11 "HIST1H2B pseudogene 3|histone cluster 1, H2b, pseudogene 3" 2011-08-10 2016-08-15 2016-08-15 100820735 ENSG00000226908 OTTHUMG00000016544 NG_030513 PGOHUM00000248323 +HGNC:4766 HIST1H3A histone cluster 1 H3 family member a protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H3/A H3FA "H3 histone family, member A|histone 1, H3a|histone cluster 1, H3a" Histones 864 1998-09-07 2003-02-21 2016-08-15 2016-08-15 8350 ENSG00000275714 OTTHUMG00000014418 uc003nfp.2 Z46261 NM_003529 CCDS4570 P68431 "9119399|12408966" MGI:2448322 RGD:1598076 HIST1H3A 602810 +HGNC:4776 HIST1H3B histone cluster 1 H3 family member b protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H3/l H3FL "H3 histone family, member L|histone 1, H3b|histone cluster 1, H3b" Histones 864 1998-08-27 2003-03-14 2016-08-15 2016-08-15 8358 ENSG00000274267 OTTHUMG00000014415 uc003nfs.2 X00090 NM_003537 CCDS4573 P68431 "6647026|9119399|12408966" MGI:2448351 HIST1H3B 602819 +HGNC:4768 HIST1H3C histone cluster 1 H3 family member c protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H3/c|H3.1" H3FC "H3 histone family, member C|histone 1, H3c|histone cluster 1, H3c" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8352 ENSG00000278272 OTTHUMG00000014416 uc003nfv.4 X57128 NM_003531 CCDS4576 P68431 "8227173|9119399|12408966" MGI:2448355 HIST1H3C 602812 +HGNC:4767 HIST1H3D histone cluster 1 H3 family member d protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H3/b H3FB "H3 histone family, member B|histone 1, H3d|histone cluster 1, H3d" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-10-05 8351 ENSG00000197409 OTTHUMG00000014433 uc063mgi.1 Z80784 NM_003530 CCDS4590 P68431 "9119399|12408966" MGI:2668828 HIST1H3D 602811 +HGNC:4769 HIST1H3E histone cluster 1 H3 family member e protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H3/d|H3.1" H3FD "H3 histone family, member D|histone 1, H3e|histone cluster 1, H3e" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8353 ENSG00000274750 OTTHUMG00000014434 uc003nhc.6 M60746 NM_003532 CCDS4596 P68431 "1916825|12408966" MGI:2448349 HIST1H3E 602813 +HGNC:4773 HIST1H3F histone cluster 1 H3 family member f protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H3/i H3FI "H3 histone family, member I|histone 1, H3f|histone cluster 1, H3f" Histones 864 1998-10-05 2003-03-14 2016-08-15 2016-08-15 8968 ENSG00000277775 OTTHUMG00000014435 uc003nhg.2 Z80786 NM_021018 CCDS4600 P68431 "9119399|12408966" MGI:2448350 HIST1H3F 602816 +HGNC:4772 HIST1H3G histone cluster 1 H3 family member g protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H3/h H3FH "H3 histone family, member H|histone 1, H3g|histone cluster 1, H3g" Histones 864 1998-08-27 2003-03-14 2016-08-15 2016-08-15 8355 ENSG00000273983 OTTHUMG00000014436 uc003nhi.4 Z80785 NM_003534 CCDS4602 P68431 "9119399|12408966" MGI:2448357 RGD:1306445 HIST1H3G 602815 +HGNC:4775 HIST1H3H histone cluster 1 H3 family member h protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H3/k|H3F1K" H3FK "H3 histone family, member K|histone 1, H3h|histone cluster 1, H3h" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8357 ENSG00000278828 OTTHUMG00000014483 uc003njm.4 Z83735 NM_003536 CCDS4627 P68431 "9439656|12408966" MGI:2448319 HIST1H3H 602818 +HGNC:4771 HIST1H3I histone cluster 1 H3 family member i protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H3/f|H3.f" H3FF "H3 histone family, member F|histone 1, H3i|histone cluster 1, H3i" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8354 ENSG00000275379 OTTHUMG00000016184 uc003njy.4 X83550 NM_003533 CCDS4636 P68431 "9031620|9439656|12408966" MGI:2448326 HIST1H3I 602814 +HGNC:4774 HIST1H3J histone cluster 1 H3 family member j protein-coding gene gene with protein product Approved 6p22.1 06p22.1 H3/j H3FJ "H3 histone family, member J|histone 1, H3j|histone cluster 1, H3j" Histones 864 1998-08-27 2003-02-14 2016-08-15 2016-08-15 8356 ENSG00000197153 OTTHUMG00000016185 uc003nka.4 Z83737 NM_003535 CCDS4638 P68431 "9439656|12408966" MGI:2145541 HIST1H3J 602817 +HGNC:18982 HIST1H3PS1 histone cluster 1 H3 pseudogene 1 pseudogene pseudogene Approved 6p22.2 06p22.2 "dJ45P21.6|H3F3AP1" "histone 1, H3, pseudogene 1|histone cluster 1, H3, pseudogene 1" Histones 864 2003-12-09 2016-08-15 2016-08-15 100289545 ENSG00000220875 OTTHUMG00000014455 NG_029540 PGOHUM00000301273 +HGNC:4781 HIST1H4A histone cluster 1 H4 family member a protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H4FA "H4 histone family, member A|histone 1, H4a|histone cluster 1, H4a" Histones 864 1998-09-07 2003-03-07 2016-08-15 2016-08-15 8359 ENSG00000278637 OTTHUMG00000014419 uc003nfq.4 X60481 NM_003538 CCDS4571 P62805 "9119399|12408966" MGI:2448423 HIST1H4A 602822 +HGNC:4789 HIST1H4B histone cluster 1 H4 family member b protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H4/I H4FI "H4 histone family, member I|histone 1, H4b|histone cluster 1, H4b" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8366 ENSG00000278705 OTTHUMG00000014417 uc003nfr.4 X67081 NM_003544 CCDS4572 P62805 "9119399|12408966" MGI:2448443 HIST1H4B 602829 +HGNC:4787 HIST1H4C histone cluster 1 H4 family member c protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H4/g|dJ221C16.1" H4FG "H4 histone family, member G|histone 1, H4c|histone cluster 1, H4c" Histones 864 1998-09-07 2003-02-21 2016-08-15 2016-10-05 8364 ENSG00000197061 OTTHUMG00000014429 uc003ngi.4 X60486 NM_003542 CCDS4583 P62805 "9119399|12408966" MGI:2140113 HIST1H4C 602827 +HGNC:4782 HIST1H4D histone cluster 1 H4 family member d protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H4/b H4FB "H4 histone family, member B|histone 1, H4d|histone cluster 1, H4d" Histones 864 1998-09-07 2003-02-21 2016-08-15 2016-08-15 8360 ENSG00000277157 OTTHUMG00000014423 uc003ngu.4 X60482 NM_003539 CCDS4589 P62805 "9119399|12408966" MGI:2448441 HIST1H4D 602823 +HGNC:4790 HIST1H4E histone cluster 1 H4 family member e protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H4/j H4FJ "H4 histone family, member J|histone 1, H4e|histone cluster 1, H4e" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8367 ENSG00000276966 OTTHUMG00000014441 uc003ngy.5 Z80787 NM_003545 CCDS4593 P62805 "9119399|12408966" HIST1H4E 602830 +HGNC:4783 HIST1H4F histone cluster 1 H4 family member f protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "H4/c|H4" H4FC "H4 histone family, member C|histone 1, H4f|histone cluster 1, H4f" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8361 ENSG00000274618 OTTHUMG00000014443 uc003nhe.2 M60749 NM_003540 CCDS4598 P62805 "1916825|9119399|12408966" MGI:2448421 RGD:7725170 HIST1H4F 602824 +HGNC:4792 HIST1H4G histone cluster 1 H4 family member g protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H4/l H4FL "H4 histone family, member L|histone 1, H4g|histone cluster 1, H4g" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8369 ENSG00000275663 OTTHUMG00000014444 uc003nhf.4 Z80788 NM_003547 CCDS4599 Q99525 "9119399|12408966" HIST1H4G 602832 +HGNC:4788 HIST1H4H histone cluster 1 H4 family member h protein-coding gene gene with protein product Approved 6p22.2 06p22.2 H4/h H4FH "H4 histone family, member H|histone 1, H4h|histone cluster 1, H4h" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-10-05 8365 ENSG00000158406 OTTHUMG00000014454 uc284pyh.1 X60487 NM_003543 CCDS4604 P62805 "9119399|12408966" MGI:2448439 HIST1H4H 602828 +HGNC:4793 HIST1H4I histone cluster 1 H4 family member i protein-coding gene gene with protein product Approved 6p22.1 06p22.1 H4/m H4FM "H4 histone family, member M|histone 1, H4i|histone cluster 1, H4i" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8294 ENSG00000276180 OTTHUMG00000014471 uc003niy.2 AB000905 NM_003495 CCDS4620 P62805 "8988030|9439656|12408966" MGI:2448427 RGD:1598087 HIST1H4I 602833 +HGNC:4785 HIST1H4J histone cluster 1 H4 family member j protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H4/e|H4F2iv" H4FE "H4 histone family, member E|histone 1, H4j|histone cluster 1, H4j" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8363 ENSG00000197238 OTTHUMG00000014487 uc003njp.4 J00188 NM_021968 CCDS4630 P62805 "6265100|9439656|12408966" MGI:2448425 HIST1H4J 602826 +HGNC:4784 HIST1H4K histone cluster 1 H4 family member k protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H4/d|H4F2iii|dJ160A22.1" H4FD "H4 histone family, member D|histone 1, H4k|histone cluster 1, H4k" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8362 ENSG00000273542 OTTHUMG00000014488 uc003njr.4 X60483 NM_003541 CCDS4631 P62805 "9439656|12408966" MGI:2448436 HIST1H4K 602825 +HGNC:4791 HIST1H4L histone cluster 1 H4 family member l protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "H4.k|H4/k" H4FK "H4 histone family, member K|histone 1, H4l|histone cluster 1, H4l" Histones 864 1998-09-07 2003-02-14 2016-08-15 2016-08-15 8368 ENSG00000275126 OTTHUMG00000016211 uc003njz.4 X83548 NM_003546 CCDS4637 P62805 "9031620|9439656|12408966" MGI:4843992 RGD:620814 HIST1H4L 602831 +HGNC:4786 HIST1H4PS1 histone cluster 1 H4 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "pH4/f|dJ97D16.3" H4FFP "H4 histone family, member F, pseudogene|histone 1, H4, pseudogene 1|histone cluster 1, H4, pseudogene 1" Histones 864 1998-10-05 2003-12-10 2016-08-15 2016-08-15 10337 ENSG00000217862 OTTHUMG00000016429 X60485 NG_029323 9439656 +HGNC:4736 HIST2H2AA3 histone cluster 2 H2A family member a3 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "H2A.2|H2A/q" "H2AFO|HIST2H2AA" "H2A histone family, member O|histone 2, H2aa|histone 2, H2aa3|histone cluster 2, H2aa3" Histones 864 1998-09-07 2006-06-12 2016-08-15 2016-08-15 8337 ENSG00000203812 OTTHUMG00000188678 uc001esw.4 K01889 NM_003516 CCDS934 Q6FI13 "6326092|8179821|15527963" "MGI:96097|MGI:2448283" RGD:1584037 142720 +HGNC:29668 HIST2H2AA4 histone cluster 2 H2A family member a4 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 H2A/r "histone 2, H2aa4|histone cluster 2, H2aa4" Histones 864 2006-06-12 2016-08-15 2016-08-15 723790 ENSG00000272196 OTTHUMG00000012097 uc001esx.4 L19779 NM_001040874 CCDS30849 Q6FI13 15527963 "MGI:96097|MGI:2448283" HIST2H2AA4 +HGNC:20508 HIST2H2AB histone cluster 2 H2A family member b protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "histone 2, H2ab|histone cluster 2, H2ab" Histones 864 2003-02-19 2016-08-15 2016-08-15 317772 ENSG00000184270 OTTHUMG00000012085 uc001ete.4 AY131972 NM_175065 CCDS938 Q8IUE6 12408966 MGI:2448314 RGD:1584064 HIST2H2AB 615014 +HGNC:4738 HIST2H2AC histone cluster 2 H2A family member c protein-coding gene gene with protein product Approved 1q21.2 01q21.2 H2A/q "H2A|H2AFQ" "H2A histone family, member Q|histone 2, H2ac|histone cluster 2, H2ac" Histones 864 1998-08-27 2003-02-21 2016-08-15 2016-08-15 8338 ENSG00000184260 OTTHUMG00000035825 uc001etd.4 AY131973 NM_003517 CCDS937 Q16777 "1469070|9439656|12408966" MGI:2448316 RGD:1560965 HIST2H2AC 602797 +HGNC:20560 HIST2H2BA histone cluster 2 H2B family member a (pseudogene) pseudogene pseudogene Approved 1p11.2 01p11.2 "histone 2, H2ba|histone cluster 2, H2ba|histone cluster 2, H2ba (pseudogene)" Histones 864 2003-02-20 2016-08-15 2016-08-15 337875 ENSG00000223345 OTTHUMG00000040899 AY131975 NR_027337 12408966 +HGNC:20654 HIST2H2BB histone cluster 2 H2B family member b (pseudogene) pseudogene pseudogene Approved 1q21.1 01q21.1 "histone 2, H2bb|histone cluster 2, H2bb|histone cluster 2, H2bb (pseudogene)" Histones 864 2003-03-12 2016-08-15 2016-10-05 338391 ENSG00000240929 OTTHUMG00000012093 AY131976 NG_002652 12408966 PGOHUM00000244262 +HGNC:20516 HIST2H2BC histone cluster 2 H2B family member c (pseudogene) pseudogene pseudogene Approved 1q21.2 01q21.2 H2B/t "histone 2, H2bc|histone cluster 2, H2bc|histone cluster 2, H2bc (pseudogene)" Histones 864 2003-02-20 2016-08-15 2016-08-15 337873 ENSG00000203819 OTTHUMG00000035826 AY131977 NR_036461 Q6DN03 "12408966|15527963" +HGNC:20517 HIST2H2BD histone cluster 2 H2B family member d (pseudogene) pseudogene pseudogene Approved 1q21.2 01q21.2 "H2B/s|H2B/o" H2BFO "histone 2, H2bd|H2B histone family, member O|histone cluster 2, H2bd (pseudogene)" Histones 864 2003-02-20 2016-08-15 2016-08-15 337874 ENSG00000220323 OTTHUMG00000035827 AY131978 NG_001226 Q6DRA6 "12408966|15527963" +HGNC:4760 HIST2H2BE histone cluster 2 H2B family member e protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "H2B/q|H2B.1" "H2B|H2BFQ" "H2B histone family, member Q|histone 2, H2be|histone cluster 2, H2be" Histones 864 1998-08-27 2003-03-07 2016-08-15 2016-08-15 8349 ENSG00000184678 OTTHUMG00000012095 uc057klp.1 AY131979 NM_003528 CCDS936 Q16778 "1469070|12408966" HIST2H2BE 601831 +HGNC:24700 HIST2H2BF histone cluster 2 H2B family member f protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "histone 2, H2bf|histone cluster 2, H2bf" Histones 864 2006-06-12 2016-08-15 2016-08-15 440689 ENSG00000203814 OTTHUMG00000183159 uc001esr.5 BC110793 NM_001024599 "CCDS30846|CCDS53359" Q5QNW6 MGI:2448413 HIST2H2BF +HGNC:20505 HIST2H3A histone cluster 2 H3 family member a protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "H3/n|H3/o" "histone 2, H3a|histone cluster 2, H3a" Histones 864 2003-02-19 2016-08-15 2016-08-15 333932 ENSG00000203852 OTTHUMG00000012094 uc001esy.4 AF531305 NM_001005464 CCDS30850 Q71DI3 "12408966|15527963" MGI:2448329 HIST2H3A +HGNC:20504 HIST2H3B entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-09-24 +HGNC:20503 HIST2H3C histone cluster 2 H3 family member c protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "MGC9629|H3/m|H3|H3.2|H3/M" "H3F2|H3FM" "H3 histone family, member M|histone 2, H3c|histone cluster 2, H3c" Histones 864 2003-02-19 2016-08-15 2016-08-15 126961 ENSG00000203811 OTTHUMG00000012190 uc001esv.4 AF531307 NM_021059 CCDS30848 Q71DI3 "12408966|3013246" MGI:3650546 RGD:1311554 HIST2H3C 142780 +HGNC:25311 HIST2H3D histone cluster 2 H3 family member d protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "histone 2, H3d|histone cluster 2, H3d" Histones 864 2006-06-12 2016-08-15 2016-08-15 653604 ENSG00000183598 OTTHUMG00000012092 uc010pbl.3 AL591493 NM_001123375 CCDS41388 Q71DI3 MGI:2448320 RGD:1586732 HIST2H3D +HGNC:43797 HIST2H3DP1 histone cluster 2 H3 family member d pseudogene 1 pseudogene pseudogene Approved 1p11.2 01p11.2 p05 histone cluster 2, H3d pseudogene 1 2012-04-13 2016-08-15 2016-08-15 106479023 ENSG00000213244 OTTHUMG00000040898 NG_044279 21782046 PGOHUM00000244879 +HGNC:32060 HIST2H3PS2 histone cluster 2 H3 pseudogene 2 pseudogene pseudogene Approved 1q21.1 01q21.1 p06 "histone 2, H3, pseudogene 2|histone cluster 2, H3, pseudogene 2" Histones 864 2006-06-12 2016-08-15 2016-08-15 440686 ENSG00000203818 OTTHUMG00000041033 uc057jyp.2 AL109948 NG_012783 HIST2H3PS2 +HGNC:4794 HIST2H4A histone cluster 2 H4 family member a protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "H4F2|H4FN|HIST2H4|H4/n" "H4 histone, family 2|histone 2, H4|histone 2, H4a|histone cluster 2, H4a" Histones 864 1998-09-07 2006-06-12 2016-08-15 2016-08-15 8370 ENSG00000270882 OTTHUMG00000012189 uc001ess.4 M16707 NM_003548 CCDS30847 P62805 "3035717|6314274|15527963" MGI:2448420 HIST2H4A 142750 +HGNC:29607 HIST2H4B histone cluster 2 H4 family member b protein-coding gene gene with protein product Approved 1q21.2 01q21.2 H4/o "histone 2, H4b|histone cluster 2, H4b" Histones 864 2006-06-12 2016-08-15 2016-08-15 554313 ENSG00000270276 OTTHUMG00000188201 uc001etb.4 BC108260 NM_001034077 CCDS30851 P62805 15527963 MGI:2448419 HIST2H4B +HGNC:20507 HIST3H2A histone cluster 3 H2A protein-coding gene gene with protein product Approved 1q42.13 01q42.13 MGC3165 "histone 3, H2a|histone cluster 3, H2a" Histones 864 2003-02-19 2016-08-15 2016-08-15 92815 ENSG00000181218 OTTHUMG00000040046 uc001hsy.4 AY131974 NM_033445 CCDS1573 Q7L7L0 12408966 MGI:2448458 HIST3H2A 615015 +HGNC:20515 HIST3H2BA histone cluster 3 H2B family member a (pseudogene) pseudogene pseudogene Approved 1q42.13 01q42.13 "histone 3, H2ba|histone cluster 3, H2ba|histone cluster 3, H2ba (pseudogene)" Histones 864 2003-02-20 2016-08-15 2016-08-15 337872 ENSG00000181201 OTTHUMG00000040095 AY131980 NG_002618 12408966 MGI:1925553 +HGNC:20514 HIST3H2BB histone cluster 3 H2B family member b protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "histone 3, H2bb|histone cluster 3, H2bb" Histones 864 2003-02-20 2016-08-15 2016-08-15 128312 ENSG00000196890 OTTHUMG00000040045 uc001hsz.4 AY131981 NM_175055 CCDS1574 Q8N257 12408966 MGI:1922442 RGD:1583885 HIST3H2BB 615046 +HGNC:4778 HIST3H3 histone cluster 3 H3 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "H3t|H3/g|H3.4" H3FT "H3 histone family, member T|histone 3, H3|histone cluster 3, H3" Histones 864 1998-09-30 2003-02-21 2016-08-15 2016-08-15 8290 ENSG00000168148 OTTHUMG00000040044 uc001hsx.1 Z49861 NM_003493 CCDS1572 Q16695 "8834248|12408966" RGD:1583877 HIST3H3 602820 +HGNC:20510 HIST4H4 histone cluster 4 H4 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 MGC24116 "histone 4, H4|histone cluster 4, H4" Histones 864 2003-02-20 2016-08-15 2016-08-15 121504 ENSG00000197837 OTTHUMG00000168735 uc001rcf.5 AY128653 NM_175054 CCDS8665 P62805 12408966 MGI:2448443 RGD:1596791 HIST4H4 615069 +HGNC:4920 HIVEP1 human immunodeficiency virus type I enhancer binding protein 1 protein-coding gene gene with protein product Approved 6p24.1 06p24.1 "CIRIP|MBP-1|CRYBP1|PRDII-BF1|ZAS1|Schnurri-1|ZNF40A" ZNF40 "human immunodeficiency virus type I enhancer-binding protein 1|zinc finger protein 40" Zinc fingers C2H2-type 28 1990-10-04 2001-11-28 2016-10-05 3096 ENSG00000095951 OTTHUMG00000014265 uc003nac.4 J05011 NM_002114 CCDS43426 P15822 2037300 MGI:96100 RGD:727847 HIVEP1 194540 +HGNC:4921 HIVEP2 human immunodeficiency virus type I enhancer binding protein 2 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 "MBP-2|HIV-EP2|MIBP1|ZAS2|Schnurri-2|ZNF40B" c-myc intron binding protein 1 human immunodeficiency virus type I enhancer-binding protein 2 Zinc fingers C2H2-type 28 1992-10-21 2001-11-28 2016-10-05 3097 ENSG00000010818 OTTHUMG00000015713 uc003qjd.4 M60119 XM_017010805 CCDS43510 P31629 "1733857|2022670" MGI:1338076 RGD:61988 HIVEP2 143054 +HGNC:13561 HIVEP3 human immunodeficiency virus type I enhancer binding protein 3 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "KRC|KBP1|KBP-1|SHN3|FLJ16752|KIAA1555|ZAS3|Schnurri-3|ZNF40C" kappabinding protein-1 human immunodeficiency virus type I enhancer-binding protein 3 Zinc fingers C2H2-type 28 2000-09-25 2001-11-28 2016-10-05 59269 ENSG00000127124 OTTHUMG00000006361 uc001cgz.5 AF278765 NM_024503 "CCDS463|CCDS44124" Q5T1R4 11161801 MGI:106589 RGD:1311252 HIVEP3 606649 +HGNC:25444 HJURP Holliday junction recognition protein protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "DKFZp762E1312|URLC9|hFLEG1|FAKTS" 2007-12-06 2014-11-19 55355 ENSG00000123485 OTTHUMG00000059125 uc002vvg.5 NM_018410 "CCDS33406|CCDS63166|CCDS63167" Q8NCD3 17823411 MGI:2685821 RGD:1305846 HJURP 612667 +HGNC:4922 HK1 hexokinase 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 2001-06-22 2016-10-12 3098 ENSG00000156515 OTTHUMG00000018380 uc001jpl.5 M75126 NM_000188 "CCDS7289|CCDS7290|CCDS7291|CCDS7292" P19367 MGI:96103 RGD:2796 LRG_365|http://www.lrg-sequence.org/LRG/LRG_365 HK1 142600 122420 2.7.1.1 +HGNC:4923 HK2 hexokinase 2 protein-coding gene gene with protein product Approved 2p12 02p12 1993-03-11 2016-10-05 3099 ENSG00000159399 OTTHUMG00000129972 uc002snd.4 NM_000189 CCDS1956 P52789 MGI:1315197 RGD:2797 HK2 601125 2.7.1.1 +HGNC:4924 HK2P1 hexokinase 2 pseudogene 1 pseudogene pseudogene Approved Xq21.1 Xq21.1 HK2P hexokinase 2 pseudogene 1995-05-26 2010-03-19 2010-03-19 2014-11-19 642546 ENSG00000228612 OTTHUMG00000021906 NG_009860 7999069 PGOHUM00000241413 +HGNC:16679 HK2P2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4925 HK3 hexokinase 3 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 hexokinase 3 (white cell) 1993-03-11 2016-01-22 2016-01-22 3101 ENSG00000160883 OTTHUMG00000130855 uc003mfa.4 NM_002115 CCDS4407 P52790 8812439 MGI:2670962 RGD:2798 HK3 142570 2.7.1.1 +HGNC:23302 HKDC1 hexokinase domain containing 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "FLJ37767|FLJ22761" 2004-05-27 2015-09-11 80201 ENSG00000156510 OTTHUMG00000018371 uc001jpf.4 NM_025130 CCDS7288 Q2TB90 12477932 MGI:2384910 HKDC1 +HGNC:4928 HKR1 HKR1, GLI-Kruppel zinc finger family member protein-coding gene gene with protein product Approved 19q13.13 19q13.13 ZNF875 oncogene HKR1 GLI-Kruppel family member HKR1 Zinc fingers C2H2-type 28 1989-05-29 2010-05-04 2014-11-18 284459 ENSG00000181666 OTTHUMG00000181937 uc060xtq.1 M20675 NM_181786 "CCDS12502|CCDS82337|CCDS82338|CCDS82339" P10072 "2850480|9813242" HKR1 165250 232 +HGNC:4931 HLA-A major histocompatibility complex, class I, A protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3105 ENSG00000206503 OTTHUMG00000130501 uc021yub.2 D32129 NM_002116 CCDS34373 "P01891|P01892|P04439|P05534|P10314|P10316|P13746|P16188|P16189|P16190|P18462|P30443|P30447|P30450|P30453|P30455|P30456|P30457|P30459|P30512|Q09160" 8838351 "MGI:95896|MGI:95904|MGI:95928|MGI:95929|MGI:95931|MGI:95933|MGI:95935|MGI:95936|MGI:892004|MGI:3702919|MGI:3704134" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-A 142800 218376 +HGNC:4932 HLA-B major histocompatibility complex, class I, B protein-coding gene gene with protein product Approved 6p21.33 06p21.33 AS ankylosing spondylitis "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3106 ENSG00000234745 OTTHUMG00000031153 uc011imz.3 M15470 NM_005514 CCDS34394 "P01889|P03989|P10319|P18463|P18464|P18465|P30460|P30461|P30462|P30464|P30466|P30475|P30479|P30480|P30481|P30483|P30484|P30485|P30486|P30487|P30488|P30490|P30491|P30492|P30493|P30495|P30498|P30685|Q04826|Q29718|Q29836|Q29940|Q31610|Q31612|Q95365" 3459708 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-B 142830 122422 +HGNC:4933 HLA-C major histocompatibility complex, class I, C protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "HLA-JY3|D6S204|PSORS1" psoriasis susceptibility 1 "Histocompatibility complex|C1-set domain containing" "588|591" 1986-01-01 2016-10-05 3107 ENSG00000204525 OTTHUMG00000031154 uc003nsy.4 M11886 NM_002117 CCDS34393 "P04222|P10321|P30499|P30501|P30504|P30505|P30508|P30510|Q07000|Q29865|Q29960|Q29963|Q95604|Q9TNN7" "3863816|16642438" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-C 142840 413847 +HGNC:4934 HLA-DMA major histocompatibility complex, class II, DM alpha protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "D6S222E|RING6" "Histocompatibility complex|C1-set domain containing" "588|591" 1991-12-18 2016-10-05 3108 ENSG00000204257 OTTHUMG00000031173 uc003ocm.3 NM_006120 CCDS4761 P28067 1922385 MGI:95921 RGD:6502526 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DMA 142855 +HGNC:4935 HLA-DMB major histocompatibility complex, class II, DM beta protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "D6S221E|RING7" "Histocompatibility complex|C1-set domain containing" "588|591" 1991-12-18 2016-10-05 3109 ENSG00000242574 OTTHUMG00000031176 uc063vxr.1 NM_002118 CCDS4760 P28068 1922365 "MGI:95922|MGI:95923" RGD:6502739 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DMB 142856 +HGNC:4936 HLA-DOA major histocompatibility complex, class II, DO alpha protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HLA-D0-alpha "HLA-DZA|HLA-DNA" "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2001-10-05 2016-10-05 3111 ENSG00000204252 OTTHUMG00000031211 uc003ocr.4 M31525 NM_002119 CCDS4763 P06340 2370084 MGI:95924 RGD:3477 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DOA 142930 +HGNC:4937 HLA-DOB major histocompatibility complex, class II, DO beta protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3112 ENSG00000241106 OTTHUMG00000031213 uc011jsv.2 NM_002120 CCDS4754 P13765 MGI:95925 RGD:1595814 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DOB 600629 +HGNC:4938 HLA-DPA1 major histocompatibility complex, class II, DP alpha 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HLA-DP1A "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3113 ENSG00000231389 OTTHUMG00000031058 uc021zsx.2 X00457 NM_033554 CCDS4764 P20036 6584734 RGD:1595921 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DPA1 142880 +HGNC:4939 HLA-DPA2 major histocompatibility complex, class II, DP alpha 2 (pseudogene) pseudogene pseudogene Approved 6p21.32 06p21.32 HLA-DP2A Histocompatibility complex 588 1986-01-01 2016-10-05 646702 ENSG00000231461 OTTHUMG00000031061 X01634 NG_009861 6597088 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:19393 HLA-DPA3 major histocompatibility complex, class II, DP alpha 3 (pseudogene) pseudogene pseudogene Approved 6p21.32 06p21.32 Histocompatibility complex 588 2002-10-23 2016-10-05 267013 ENSG00000237398 OTTHUMG00000031063 NG_011547 10452889 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4940 HLA-DPB1 major histocompatibility complex, class II, DP beta 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HLA-DP1B "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3115 ENSG00000223865 OTTHUMG00000031076 uc063zjq.1 NM_002121 CCDS4765 P04440 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DPB1 142858 362495 +HGNC:4941 HLA-DPB2 major histocompatibility complex, class II, DP beta 2 (pseudogene) pseudogene pseudogene Approved 6p21.32 06p21.32 "DP2B|DPB2" HLA-DP2B Histocompatibility complex 588 2001-06-22 2016-10-05 3116 ENSG00000224557 OTTHUMG00000031080 M23911 NR_001435 3036829 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4942 HLA-DQA1 major histocompatibility complex, class II, DQ alpha 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 CELIAC1 HLA-DQA "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3117 ENSG00000196735 OTTHUMG00000031106 uc003obr.4 NM_002122 CCDS4752 P01909 MGI:95895 RGD:1595867 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DQA1 146880 138728 +HGNC:4943 HLA-DQA2 major histocompatibility complex, class II, DQ alpha 2 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HLA-DXA "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3118 ENSG00000237541 OTTHUMG00000031108 uc011hzy.3 NM_020056 CCDS4753 P01906 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DQA2 613503 +HGNC:4944 HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "IDDM1|CELIAC1" HLA-DQB "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3119 ENSG00000179344 OTTHUMG00000031124 uc063nrh.1 NM_002123 "CCDS43451|CCDS59006" P01920 MGI:103070 RGD:3469 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DQB1 604305 211008 +HGNC:39762 HLA-DQB1-AS1 HLA-DQB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.32 06p21.32 HLA-DQB1 antisense RNA 1 (non-protein coding) 2011-04-21 2012-08-15 2012-10-12 106480429 ENSG00000223534 OTTHUMG00000140101 uc063nri.1 NR_133907 +HGNC:4945 HLA-DQB2 major histocompatibility complex, class II, DQ beta 2 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HLA-DXB "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3120 ENSG00000232629 OTTHUMG00000031125 uc063zhn.1 M83890 XM_005249051 "CCDS56419|CCDS78128" P05538 2564844 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DQB2 615161 +HGNC:4946 HLA-DQB3 major histocompatibility complex, class II, DQ beta 3 other unknown Approved 6p21.3 06p21.3 "D6S205|D6S205E|DVB|DQB3" HLA-DVB Histocompatibility complex 588 1992-06-25 2016-09-27 3121 ENSG00000226030 OTTHUMG00000031127 M35000 "1529427|2571586" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4947 HLA-DRA major histocompatibility complex, class II, DR alpha protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HLA-DRA1 "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3122 ENSG00000204287 OTTHUMG00000031269 uc003obh.5 NM_019111 CCDS4750 P01903 MGI:95900 RGD:1593283 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DRA 142860 122424 +HGNC:4948 HLA-DRB1 major histocompatibility complex, class II, DR beta 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HLA-DR1B "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2016-10-05 3123 ENSG00000196126 OTTHUMG00000031196 uc003obp.5 AJ297583 NM_002124 CCDS47409 "P01911|P01912|P04229|P13760|P13761|P20039|Q29974|Q30134|Q30167|Q5Y7A7|Q95IE3|Q9GIY3|Q9TQE0" RGD:1593282 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DRB1 142857 122427 +HGNC:4950 HLA-DRB2 major histocompatibility complex, class II, DR beta 2 (pseudogene) pseudogene pseudogene Approved 6p21.3 alternate reference locus 06p21.3 alternate reference locus HLA-DR2B Histocompatibility complex 588 2001-06-22 2007-12-12 2015-07-31 3124 ENSG00000227442 OTTHUMG00000012608 "M86691|GL000251|GL000255" NG_002392 3032786 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4951 HLA-DRB3 major histocompatibility complex, class II, DR beta 3 protein-coding gene gene with protein product Approved 6p21.3 alternate reference locus 06p21.3 alternate reference locus HLA-DR3B "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2015-07-31 3125 ENSG00000196101 OTTHUMG00000012609 uc011ixb.4 "BC008987|GL000250|GL000251|GL000255" NM_022555 P79483 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ 612735 +HGNC:4952 HLA-DRB4 major histocompatibility complex, class II, DR beta 4 protein-coding gene gene with protein product Approved 6p21.3 alternate reference locus 06p21.3 alternate reference locus HLA-DR4B "Histocompatibility complex|C1-set domain containing" "588|591" 2001-06-22 2015-07-31 3126 ENSG00000227357 OTTHUMG00000138996 uc011jsg.3 "GL000253|GL000254|GL000256" NM_021983 P13762 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4953 HLA-DRB5 major histocompatibility complex, class II, DR beta 5 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "Histocompatibility complex|C1-set domain containing" "588|591" 1990-10-16 2016-10-05 3127 ENSG00000198502 OTTHUMG00000031027 uc003obj.4 NM_002125 CCDS4751 Q30154 MGI:95901 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-DRB5 604776 +HGNC:4954 HLA-DRB6 major histocompatibility complex, class II, DR beta 6 (pseudogene) pseudogene pseudogene Approved 6p21.32 06p21.32 Histocompatibility complex 588 1992-06-25 2016-10-05 3128 ENSG00000229391 OTTHUMG00000031028 L76566 NR_001298 "1529427|10436177" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4955 HLA-DRB7 major histocompatibility complex, class II, DR beta 7 (pseudogene) pseudogene pseudogene Approved 6p21.3 alternate reference locus 06p21.3 alternate reference locus Histocompatibility complex 588 1992-06-25 2015-07-31 3129 ENSG00000227099 OTTHUMG00000139002 "AH001504|GL000252|GL000253|GL000256" NG_002433 "1529427|3856276" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4956 HLA-DRB8 major histocompatibility complex, class II, DR beta 8 (pseudogene) pseudogene pseudogene Approved 6p21.3 alternate reference locus 06p21.3 alternate reference locus Histocompatibility complex 588 1992-06-25 2015-07-31 3130 ENSG00000233697 OTTHUMG00000138997 "M20556|GL000253|GL000256" NG_002433 1529427 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4957 HLA-DRB9 major histocompatibility complex, class II, DR beta 9 (pseudogene) pseudogene pseudogene Approved 6p21.32 06p21.32 "D6S206|D6S206E" "HLA-DRB1L|HLA-DR1BL" Histocompatibility complex 588 1992-06-25 2016-10-05 3132 ENSG00000196301 OTTHUMG00000031197 S78510 NG_002432 1529427 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4962 HLA-E major histocompatibility complex, class I, E protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "Histocompatibility complex|C1-set domain containing" "588|591" 1988-05-11 2016-10-05 3133 ENSG00000204592 OTTHUMG00000031155 uc003nqg.4 M20022 NM_005516 CCDS34379 P13747 3131426 "MGI:95957|MGI:2442805" RGD:735037 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-E 143010 +HGNC:4963 HLA-F major histocompatibility complex, class I, F protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "Histocompatibility complex|C1-set domain containing" "588|591" 1990-09-10 2016-10-05 3134 ENSG00000204642 OTTHUMG00000031156 uc011evc.3 AY253269 NM_018950 "CCDS43437|CCDS43438|CCDS43439" P30511 1688605 "MGI:3647514|MGI:3779381" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-F 143110 +HGNC:26645 HLA-F-AS1 HLA-F antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 HLA-F antisense RNA 1 (non-protein coding) 2011-04-21 2012-08-15 2013-06-03 285830 ENSG00000214922 OTTHUMG00000185970 uc003rsi.4 AK092748 NR_026972 +HGNC:4964 HLA-G major histocompatibility complex, class I, G protein-coding gene gene with protein product Approved 6p22.1 06p22.1 b2 microglobulin HLA-G histocompatibility antigen, class I, G "Histocompatibility complex|C1-set domain containing" "588|591" 1990-09-10 2007-12-12 2016-10-05 3135 ENSG00000204632 OTTHUMG00000031157 uc003nnw.2 NM_002127 CCDS4668 P17693 MGI:95915 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ HLA-G 142871 +HGNC:4965 HLA-H major histocompatibility complex, class I, H (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 Histocompatibility complex 588 1991-08-01 2016-10-05 3136 ENSG00000206341 OTTHUMG00000031160 M31944 NR_001434 P01893 "1517564|2294403" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4967 HLA-J major histocompatibility complex, class I, J (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 "CDA12|HLA-59" "HLA-CDA12|D6S203" Histocompatibility complex 588 1992-06-25 2016-10-05 3137 ENSG00000204622 OTTHUMG00000031161 M80470 NR_024240 1602142 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4969 HLA-K major histocompatibility complex, class I, K (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 HLA-70 "HLAK|HLA70" Histocompatibility complex 588 1993-11-02 2007-12-12 2015-09-21 3138 ENSG00000230795 OTTHUMG00000031162 M96335 NG_002398 1517564 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ PGOHUM00000301734 +HGNC:4970 HLA-L major histocompatibility complex, class I, L (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 HLA-92 "HLA92|HLAL" Histocompatibility complex 588 1993-11-02 2011-05-05 2016-10-05 3139 ENSG00000243753 OTTHUMG00000031164 M96338 NR_027822 1517564 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:19406 HLA-N major histocompatibility complex, class I, N (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 HLA-30 Histocompatibility complex 588 2002-10-23 2016-10-05 267014 ENSG00000224372 OTTHUMG00000031167 M96329 NG_009940 "10452889|1517563" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:21196 HLA-P major histocompatibility complex, class I, P (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 dJ377H14.3 "C6orf101|HLA-90" "chromosome 6 open reading frame 101|HLA-90 pseudogene" Histocompatibility complex 588 2003-11-26 2007-12-12 2007-12-12 2016-10-05 352963 ENSG00000261548 OTTHUMG00000172781 M96333 NG_002731 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:19395 HLA-S major histocompatibility complex, class I, S (pseudogene) pseudogene pseudogene Approved 6p21.33 06p21.33 HLA-17 Histocompatibility complex 588 2002-10-23 2016-10-05 267015 ENSG00000225851 OTTHUMG00000031178 M96339 NG_009941 "10452889|1517563" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:23478 HLA-T major histocompatibility complex, class I, T (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 HLA-16 HLA-16 pseudogene Histocompatibility complex 588 2004-01-16 2007-12-12 2007-12-12 2016-10-05 352964 ENSG00000231130 OTTHUMG00000031232 M96340 NG_002398 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:23477 HLA-U major histocompatibility complex, class I, U (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 Em:AB023056.13 HLA-21 HLA-21 pseudogene Histocompatibility complex 588 2004-01-16 2007-12-12 2007-12-12 2016-10-05 352965 ENSG00000228078 OTTHUMG00000031245 M96330 NG_002398 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:23482 HLA-V major histocompatibility complex, class I, V (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 dJ377H14.4 HLA-75 HLA-75 pseudogene Histocompatibility complex 588 2004-01-16 2007-12-12 2007-12-12 2016-10-05 352962 ENSG00000181126 OTTHUMG00000031277 M96332 NG_002729 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:23425 HLA-W major histocompatibility complex, class I, W (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 HLA-80 HLA-80 pseudogene Histocompatibility complex 588 2004-01-16 2007-12-12 2007-12-12 2016-10-05 352966 ENSG00000235290 OTTHUMG00000031242 M96334 NG_015995 "10557312|1517563" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:19385 HLA-X major histocompatibility complex, class I, X (pseudogene) pseudogene pseudogene Approved 6p21.3 06p21.3 Histocompatibility complex 588 2002-10-23 2009-12-01 267016 D88576 NG_009943 8462994 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:33913 HLA-Y major histocompatibility complex, class I, Y (pseudogene) pseudogene pseudogene Approved 6p21.33 06p21.33 HLA-BEL/COQ/DEL Histocompatibility complex 588 2007-12-12 2011-07-08 100127173 "Y18651|AY344232|AY436316" IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:19394 HLA-Z major histocompatibility complex, class I, Z (pseudogene) pseudogene pseudogene Approved 6p21.32 06p21.32 HLA-Z1 Histocompatibility complex 588 2002-10-23 2016-10-05 267017 ENSG00000235301 OTTHUMG00000031189 NG_009944 8568858 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ +HGNC:4976 HLCS holocarboxylase synthetase protein-coding gene gene with protein product Approved 21q22.13 21q22.13 HCS "holocarboxylase synthetase (biotin-[proprionyl-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)|holocarboxylase synthetase (biotin-(proprionyl-Coenzyme A-carboxylase (ATP-hydrolysing)) ligase)|holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)" 1994-12-15 2016-01-14 2016-10-05 3141 ENSG00000159267 OTTHUMG00000086636 uc002yvs.4 XM_005260953 CCDS13647 P50747 7842009 MGI:894646 RGD:1565360 HLCS 609018 122430 "6.3.4.9|6.3.4.10|6.3.4.11|6.3.4.15" +HGNC:41343 HLCS-IT1 HLCS intronic transcript 1 non-coding RNA RNA, long non-coding Approved 21q22.13 21q22.13 HLCS intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874294 ENSG00000237646 OTTHUMG00000086640 uc061zyy.1 +HGNC:4977 HLF HLF, PAR bZIP transcription factor protein-coding gene gene with protein product Approved 17q22 17q22 MGC33822 "hepatic leukemia factor|PAR bZIP transcription factor" PAR bZIP family 1248 1992-02-14 2016-04-27 2016-04-27 3131 ENSG00000108924 OTTHUMG00000177840 uc002iug.2 NM_002126 "CCDS11585|CCDS82164" Q16534 1386162 MGI:96108 RGD:1582828 HLF 142385 159705 +HGNC:41922 HLFP1 hepatic leukemia factor pseudogene 1 pseudogene pseudogene Approved 6q23.2 06q23.2 2011-05-19 2014-11-18 100873813 ENSG00000218194 OTTHUMG00000015590 NG_032376 +HGNC:11099 HLTF helicase like transcription factor protein-coding gene gene with protein product Approved 3q24 03q24 "HIP116A|HLTF1|RNF80" "SNF2L3|SMARCA3" SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3 Ring finger proteins 58 1994-11-08 2006-11-09 2016-06-07 2016-10-05 6596 ENSG00000071794 OTTHUMG00000159534 uc003ewr.2 L34673 XM_017007078 "CCDS33875|CCDS82856" Q14527 7558014 MGI:1196437 RGD:1309031 HLTF 603257 +HGNC:40554 HLTF-AS1 HLTF antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q24 03q24 HLTF antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873945 ENSG00000239718 OTTHUMG00000159531 uc031sbw.1 NR_046648 +HGNC:4978 HLX H2.0 like homeobox protein-coding gene gene with protein product Approved 1q41 01q41 HB24 HLX1 "H2.0 (Drosophila)-like homeo box 1|H2.0-like homeobox 1 (Drosophila)|H2.0-like homeobox 1|H2.0-like homeobox" NKL subclass homeoboxes and pseudogenes 519 1992-04-02 2007-07-26 2016-04-06 2016-04-06 3142 ENSG00000136630 OTTHUMG00000037352 uc001hmv.5 BC033808 NM_021958 CCDS1527 Q14774 "1676597|7806220" MGI:96109 RGD:1311961 HLX 142995 8532 +HGNC:42509 HLX-AS1 HLX antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q41 01q41 2011-08-03 2014-01-17 2014-01-17 2014-11-19 100873924 ENSG00000257551 OTTHUMG00000170038 DA373928 NR_046901 +HGNC:16435 HM13 histocompatibility minor 13 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "H13|dJ324O17.1|SPP|PSL3|IMP1|IMPAS|PSENL3|SPPL1" "signal peptide peptidase beta|presenilin-like protein 3|intramembrane protease|signal peptide peptidase like 1" 2001-09-17 2016-06-21 2016-06-21 81502 ENSG00000101294 OTTHUMG00000032175 uc002wwc.5 AL110115 NM_178580 "CCDS13182|CCDS13183|CCDS42861" Q8TCT9 "12077416|14704149" MGI:95886 RGD:1308946 HM13 607106 A22.003 3.4.23.- +HGNC:41940 HM13-AS1 HM13 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q11.21 20q11.21 HM13 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100874042 ENSG00000230613 OTTHUMG00000032176 uc031rsr.1 NR_046853 +HGNC:41424 HM13-IT1 HM13 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 20q11.21 20q11.21 HM13 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 106480432 ENSG00000235313 OTTHUMG00000046194 uc061wce.1 +HGNC:4980 HMAA entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4981 HMAB entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:26137 HMBOX1 homeobox containing 1 protein-coding gene gene with protein product Approved 8p21.1-p12 08p21.1-p12 "HNF1LA|PBHNF|FLJ21616|HOT1" homeobox telomere-binding protein 1 HNF class homeoboxes 524 2006-02-24 2016-10-11 79618 ENSG00000147421 OTTHUMG00000172138 uc003xhe.4 AY522342 NM_024567 "CCDS6071|CCDS83273|CCDS83274" Q6NT76 16825764 MGI:2445066 RGD:1306787 HMBOX1 8376 +HGNC:43632 HMBOX1-IT1 HMBOX1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 8p12 08p12 HMBOX1 intronic transcript 1 (non-protein coding) 2011-12-06 2015-02-25 2015-02-25 106481795 ENSG00000259196 OTTHUMG00000132209 uc064lqf.1 +HGNC:43631 HMBOX1-OT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-02-18 +HGNC:4982 HMBS hydroxymethylbilane synthase protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "PBGD|UPS|PORC" "uroporphyrinogen I synthase|porphobilinogen deaminase|porphyria, acute; Chester type" 1986-01-01 2016-10-12 3145 ENSG00000256269 OTTHUMG00000168295 uc001puz.2 X04808 NM_000190 "CCDS8409|CCDS41726|CCDS58186|CCDS58187" P08397 "8432552|17298217" MGI:96112 RGD:2801 LRG_1076|http://www.lrg-sequence.org/LRG/LRG_1076 HMBS 609806 122438 2.5.1.61 +HGNC:24446 HMCES 5-hydroxymethylcytosine binding, ES cell specific protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "DC12|SRAPD1" "SOS response associated peptidase domain containing 1|embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein" C3orf37 "chromosome 3 open reading frame 37|5-hydroxymethylcytosine (hmC) binding, ES cell-specific" 2006-01-02 2013-08-30 2016-05-23 2016-05-23 56941 ENSG00000183624 OTTHUMG00000159452 AF201934 NM_020187 CCDS33852 Q96FZ2 "23434322|23945014" MGI:1914053 RGD:1559800 +HGNC:19194 HMCN1 hemicentin 1 protein-coding gene gene with protein product Approved 1q25.3-q31.1 01q25.3-q31.1 "FBLN6|FIBL6|FIBL-6" fibulin 6 ARMD1 age-related macular degeneration 1 (senile macular degeneration) "Fibulins|I-set domain containing" "556|593" 2005-06-03 2016-10-11 83872 ENSG00000143341 OTTHUMG00000059337 uc001grq.2 AF156100 NM_031935 CCDS30956 Q96RW7 11222143 MGI:2685047 RGD:1564772 HMCN1 608548 122442 +HGNC:21293 HMCN2 hemicentin 2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "DKFZp434P0216|FLJ23816" "Fibulins|I-set domain containing|Immunoglobulin like domain containing" "556|593|594" 2005-06-03 2015-09-08 256158 ENSG00000148357 OTTHUMG00000140096 uc064wnb.1 AK074396 XM_175125 Q8NDA2 MGI:2677838 RGD:1585467 +HGNC:4999 HMG1P entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-09-24 +HGNC:5001 HMG20A high mobility group 20A protein-coding gene gene with protein product Approved 15q24.3 15q24.3 "HMGX1|FLJ10739|HMGXB1" HMG box domain containing 1 high-mobility group 20A Non-canonical high mobility group 512 1999-06-11 2011-04-05 2016-10-05 10363 ENSG00000140382 OTTHUMG00000143729 uc002bcs.4 AF146222 NM_018200 CCDS10295 Q9NP66 10773667 MGI:1914117 RGD:1564760 HMG20A 605534 +HGNC:5002 HMG20B high mobility group 20B protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "SOXL|HMGX2|BRAF35|SMARCE1r|BRAF25|HMGXB2" HMG box domain containing 2 high-mobility group 20B Non-canonical high mobility group 512 1999-06-11 2011-04-05 2014-11-19 10362 ENSG00000064961 OTTHUMG00000150437 uc002lya.4 BC003505 NM_006339 CCDS45919 Q9P0W2 10773667 MGI:1341190 RGD:1309235 HMG20B 605535 +HGNC:5010 HMGA1 high mobility group AT-hook 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 HMGIY high-mobility group (nonhistone chromosomal) protein isoforms I and Y Canonical high mobility group 511 1993-12-15 2002-07-26 2002-07-25 2016-10-05 3159 ENSG00000137309 OTTHUMG00000014539 uc003oit.4 AF176039 NM_145899 "CCDS4788|CCDS4789" P17096 "8414980|11406267" MGI:96160 RGD:628699 HMGA1 600701 +HGNC:13321 HMGA1P1 high mobility group AT-hook 1 pseudogene 1 pseudogene pseudogene Approved Xp21.3 Xp21.3 HMGIYL1 HMGA1L1 high mobility group AT-hook 1-like 1 2003-11-26 2010-10-14 2010-10-14 2011-07-01 203477 ENSG00000236683 OTTHUMG00000021295 AF116914 NG_002324 "11672774|12727900" PGOHUM00000241680 +HGNC:13322 HMGA1P2 high mobility group AT-hook 1 pseudogene 2 pseudogene pseudogene Approved 4q13.3 04q13.3 HMGIYL2 HMGA1L2 high mobility group AT-hook 1-like 2 2003-11-26 2010-10-14 2010-10-14 2011-07-01 171559 ENSG00000248641 OTTHUMG00000160837 AF236857 NG_001569 "11672774|12727900" PGOHUM00000245962 +HGNC:13323 HMGA1P3 high mobility group AT-hook 1 pseudogene 3 pseudogene pseudogene Approved 12q24 12q24 HMGIYL3 HMGA1L3 high mobility group AT-hook 1-like 3 2003-11-26 2010-10-14 2010-10-14 2014-11-18 144712 ENSG00000258011 OTTHUMG00000169523 BK000551 NG_002323 "11672774|12727900" PGOHUM00000239577 +HGNC:39093 HMGA1P4 high mobility group AT-hook 1 pseudogene 4 pseudogene pseudogene Approved 9q34.11 09q34.11 2010-10-14 2012-03-12 100506080 ENSG00000234705 OTTHUMG00000020753 uc064wgd.1 NG_031851 12727900 PGOHUM00000236338 +HGNC:19120 HMGA1P5 high mobility group AT-hook 1 pseudogene 5 pseudogene pseudogene Approved 10q22.2 10q22.2 HMGA1L5 high mobility group AT-hook 1-like 5 2003-11-26 2010-10-14 2010-10-14 2011-07-01 387063 ENSG00000233313 OTTHUMG00000018521 NG_008009 12727900 PGOHUM00000238542 +HGNC:19121 HMGA1P6 high mobility group AT-hook 1 pseudogene 6 pseudogene pseudogene Approved 13q12.12 13q12.12 HMGA1L6 high mobility group AT-hook 1-like 6 2003-11-26 2010-10-14 2010-10-14 2014-11-19 100130029 ENSG00000233440 OTTHUMG00000016558 NG_027901 12727900 PGOHUM00000248528 +HGNC:19122 HMGA1P7 high mobility group AT-hook 1 pseudogene 7 pseudogene pseudogene Approved 6q23.2 06q23.2 HMGA1L7 high mobility group AT-hook 1-like 7 2003-11-26 2010-10-14 2010-10-14 2014-11-19 387065 ENSG00000216753 OTTHUMG00000015610 NR_037938 12727900 PGOHUM00000243380 +HGNC:39183 HMGA1P8 high mobility group AT-hook 1 pseudogene 8 pseudogene pseudogene Approved 2p13.1 02p13.1 HMGA1-p "high mobility group AT-hook 1 pseudogene 8|high mobility group AT-hook 1 pseudogene 8 (functional)" Transcribed pseudogenes with published function 859 2010-11-17 2016-01-29 2016-01-29 100130009 ENSG00000233155 OTTHUMG00000152827 NG_032791 "12727900|20975707" +HGNC:5009 HMGA2 high mobility group AT-hook 2 protein-coding gene gene with protein product Approved 12q14.3 12q14.3 "BABL|LIPO" HMGIC high-mobility group (nonhistone chromosomal) protein isoform I-C Canonical high mobility group 511 1998-10-23 2002-07-26 2002-07-25 2016-10-05 8091 ENSG00000149948 OTTHUMG00000168936 uc001ssx.4 U28754 NM_003483 "CCDS31854|CCDS44936|CCDS73491|CCDS73492|CCDS81709" P52926 "8824803|9003504" MGI:101761 RGD:620617 HMGA2 600698 248487 +HGNC:4983 HMGB1 high mobility group box 1 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "HMG3|SBP-1|DKFZp686A04236" "high mobility group box 1|Sulfoglucuronyl carbohydrate binding protein|Amphoterin|high mobility group protein 1" HMG1 "high-mobility group (nonhistone chromosomal) protein 1|high-mobility group box 1" Canonical high mobility group 511 1993-12-13 2002-08-16 2011-04-05 2016-10-05 3146 ENSG00000189403 OTTHUMG00000016670 uc058wdx.1 D63874 NM_002128 CCDS9335 P09429 "8661151|11279268" MGI:96113 RGD:2802 HMGB1 163905 +HGNC:4993 HMGB1P1 high mobility group box 1 pseudogene 1 pseudogene pseudogene Approved 20q13.31 20q13.31 HMG1L7 "HMG1L1|HMGB1L1" "high-mobility group (nonhistone chromosomal) protein 1-like 1|high-mobility group box 1-like 1|high-mobility group box 1 pseudogene 1" 1999-06-11 2010-10-15 2011-04-05 2016-08-16 10357 ENSG00000124097 OTTHUMG00000032823 AF076674 NG_016433 B2RPK0 9925949 RGD:1587112 HMGB1P1 PGOHUM00000297026 +HGNC:4995 HMGB1P3 high mobility group box 1 pseudogene 3 pseudogene pseudogene Approved 2q37.1 02q37.1 "HMG1L3|HMGB1L3" "high-mobility group (nonhistone chromosomal) protein 1-like 3|high-mobility group box 1-like 3|high-mobility group box 1 pseudogene 3" 1999-06-11 2010-10-15 2011-04-05 2011-09-21 10356 ENSG00000250011 OTTHUMG00000153731 AF076675 NG_000883 9925949 +HGNC:4996 HMGB1P4 high mobility group box 1 pseudogene 4 pseudogene pseudogene Approved 2q31.1 02q31.1 "HMG1L4|HMG1L4P|HMGB1L4" "high-mobility group (nonhistone chromosomal) protein 1-like 4|high-mobility group (nonhistone chromosomal) protein 1-like 4 pseudogene|high-mobility group box 1-like 4|high-mobility group box 1 pseudogene 4" 1999-06-11 2010-10-15 2011-04-05 2016-08-16 10355 ENSG00000214821 OTTHUMG00000154005 AF076676 NG_004767 9925949 PGOHUM00000298223 +HGNC:4997 HMGB1P5 high mobility group box 1 pseudogene 5 pseudogene pseudogene Approved 3p24.3 03p24.3 "HMG1L5|HMGB1L15|HMGB1P2|HMGB1L5" "high-mobility group (nonhistone chromosomal) protein 1-like 5|high-mobility group (nonhistone chromosomal) protein 1-like 5 pseudogene|high-mobility group box 1-like 5 pseudogene|high-mobility group box 1-like 15|high-mobility group box 1 pseudogene 2|high-mobility group box 1-like 5|high-mobility group box 1 pseudogene 5" 1999-06-11 2010-10-15 2011-04-05 2016-10-05 10354 ENSG00000132967 OTTHUMG00000155591 AF076677 NG_000897 9925949 +HGNC:4998 HMGB1P6 high mobility group box 1 pseudogene 6 pseudogene pseudogene Approved 15q23 15q23 "HMG1L6|HMGB1L6" "high-mobility group (nonhistone chromosomal) protein 1-like 6|high-mobility group (nonhistone chromosomal) protein 1-like 6 pseudogene|high-mobility group box 1-like 6|high-mobility group box 1 pseudogene 6" 1999-06-11 2010-10-15 2011-04-05 2016-08-16 645292 ENSG00000259781 OTTHUMG00000172839 AF076678 NG_006664 "9925949|12727900" PGOHUM00000293000 +HGNC:39096 HMGB1P7 high mobility group box 1 pseudogene 7 pseudogene pseudogene Approved 10p11.22 10p11.22 high-mobility group box 1 pseudogene 7 2010-10-15 2011-04-05 2016-08-16 100420044 ENSG00000231148 OTTHUMG00000017912 NG_025482 12727900 PGOHUM00000290088 +HGNC:13319 HMGB1P8 high mobility group box 1 pseudogene 8 pseudogene pseudogene Approved 15q26.1 15q26.1 "HMG1L8|HMGB1L8" "high-mobility group (nonhistone chromosomal) protein 1-like 8|high-mobility group box 1-like 8|high-mobility group box 1 pseudogene 8" 2006-01-24 2010-10-15 2011-04-05 2016-08-16 692147 ENSG00000259699 OTTHUMG00000171990 AF165167 NG_005579 12727900 PGOHUM00000293070 +HGNC:13320 HMGB1P9 high mobility group box 1 pseudogene 9 pseudogene pseudogene Approved 2q35 02q35 "HMG1L9|HMGB1L9" "high-mobility group (nonhistone chromosomal) protein 1-like 9|high-mobility group box 1-like 9|high-mobility group box 1 pseudogene 9" 2006-01-24 2010-10-15 2011-04-05 2016-08-16 654503 ENSG00000224159 OTTHUMG00000155227 AF165168 NG_005481 12727900 PGOHUM00000298878 +HGNC:4994 HMGB1P10 high mobility group box 1 pseudogene 10 pseudogene pseudogene Approved 22q12.1 22q12.1 "HMG1L10|HMGB1L10" "high-mobility group (nonhistone chromosomal) protein 1-like 10|high-mobility group box 1-like 10|high-mobility group box 1 pseudogene 10" 2000-01-12 2010-10-15 2011-04-05 2015-08-19 100130561 ENSG00000213707 OTTHUMG00000150984 NG_008794 10591208 PGOHUM00000297731 +HGNC:13316 HMGB1P11 high mobility group box 1 pseudogene 11 pseudogene pseudogene Approved 1q24.3 01q24.3 HMGB1L11 "high-mobility group box 1-like 11|high-mobility group box 1 pseudogene 11" 2009-01-06 2010-10-15 2011-04-05 2016-08-16 100419996 ENSG00000230547 OTTHUMG00000035509 NG_027013 12727900 PGOHUM00000295950 +HGNC:13317 HMGB1P12 high mobility group box 1 pseudogene 12 pseudogene pseudogene Approved Xq23 Xq23 HMGB1L12 "high-mobility group box 1-like 12|high-mobility group box 1 pseudogene 12" 2009-01-06 2010-10-15 2011-04-05 2016-08-16 100129723 ENSG00000223904 OTTHUMG00000022205 NG_022690 12727900 PGOHUM00000305253 +HGNC:13318 HMGB1P13 high mobility group box 1 pseudogene 13 pseudogene pseudogene Approved 6q23.2 06q23.2 HMGB1L13 "high-mobility group box 1-like 13|high-mobility group box 1 pseudogene 13" 2009-01-06 2010-10-15 2011-04-05 2014-11-19 100129706 ENSG00000220557 OTTHUMG00000015594 NG_022327 12727900 PGOHUM00000257146 +HGNC:20014 HMGB1P14 high mobility group box 1 pseudogene 14 pseudogene pseudogene Approved 14q23.1 14q23.1 "HMGB1P|HMGB1L14" "high-mobility group box 1 pseudogene|high-mobility group box 1-like 14|high-mobility group box 1 pseudogene 14" 2003-01-13 2010-10-15 2011-04-05 2011-09-21 319130 ENSG00000180189 OTTHUMG00000171109 NG_002508 12727900 PGOHUM00000248187 +HGNC:39097 HMGB1P15 high mobility group box 1 pseudogene 15 pseudogene pseudogene Approved Xp11.22 Xp11.22 high-mobility group box 1 pseudogene 15 2010-10-15 2011-04-05 2016-08-16 644129 ENSG00000238190 OTTHUMG00000021524 NG_030350 12727900 PGOHUM00000304615 +HGNC:39098 HMGB1P16 high mobility group box 1 pseudogene 16 pseudogene pseudogene Approved Xp21.1 Xp21.1 high-mobility group box 1 pseudogene 16 2010-10-15 2011-04-05 2016-08-16 646577 ENSG00000229384 OTTHUMG00000021352 NG_022656 12727900 PGOHUM00000305004 +HGNC:39099 HMGB1P17 high mobility group box 1 pseudogene 17 pseudogene pseudogene Approved 6q23.3 06q23.3 high-mobility group box 1 pseudogene 17 2010-10-15 2011-04-05 2016-08-16 100419974 ENSG00000217482 OTTHUMG00000015635 NG_025876 12727900 PGOHUM00000301564 +HGNC:39100 HMGB1P18 high mobility group box 1 pseudogene 18 pseudogene pseudogene Approved 1p31.1 01p31.1 high-mobility group box 1 pseudogene 18 2010-10-15 2011-04-05 2016-08-16 646526 ENSG00000236407 OTTHUMG00000010771 NG_022786 12727900 PGOHUM00000296375 +HGNC:39101 HMGB1P19 high mobility group box 1 pseudogene 19 pseudogene pseudogene Approved 8q24.13 08q24.13 high-mobility group box 1 pseudogene 19 2010-10-15 2011-04-05 2016-08-16 100419979 ENSG00000253463 OTTHUMG00000165082 NG_026129 12727900 PGOHUM00000303669 +HGNC:39103 HMGB1P20 high mobility group box 1 pseudogene 20 pseudogene pseudogene Approved 6p12.1 06p12.1 high-mobility group box 1 pseudogene 20 2010-10-15 2011-04-05 2016-08-16 100128227 ENSG00000219163 OTTHUMG00000014874 NG_028948 12727900 PGOHUM00000301386 +HGNC:39106 HMGB1P21 high mobility group box 1 pseudogene 21 pseudogene pseudogene Approved 5q14.1 05q14.1 high-mobility group box 1 pseudogene 21 2010-10-15 2011-04-05 2012-06-20 100419947 ENSG00000248909 OTTHUMG00000162478 NG_024603 12727900 PGOHUM00000260009 +HGNC:39107 HMGB1P22 high mobility group box 1 pseudogene 22 pseudogene pseudogene Approved 5q23.2 05q23.2 high-mobility group box 1 pseudogene 22 2010-10-15 2011-04-05 2016-08-16 644659 ENSG00000250721 OTTHUMG00000163013 NG_021896 12727900 PGOHUM00000301110 +HGNC:39114 HMGB1P23 high mobility group box 1 pseudogene 23 pseudogene pseudogene Approved 8p12 08p12 high-mobility group box 1 pseudogene 23 2010-10-18 2011-04-05 2016-08-16 100873891 ENSG00000253770 OTTHUMG00000164034 NG_032226 12727900 PGOHUM00000303490 +HGNC:39115 HMGB1P24 high mobility group box 1 pseudogene 24 pseudogene pseudogene Approved 17q12 17q12 high-mobility group box 1 pseudogene 24 2010-10-18 2011-04-05 2015-02-02 100420063 ENSG00000275029 OTTHUMG00000188465 NG_026178 12727900 PGOHUM00000294090 +HGNC:39116 HMGB1P25 high mobility group box 1 pseudogene 25 pseudogene pseudogene Approved 2p25.1 02p25.1 high-mobility group box 1 pseudogene 25 2010-10-18 2011-04-05 2016-08-16 644651 ENSG00000230886 OTTHUMG00000159110 NG_021494 12727900 PGOHUM00000297793 +HGNC:39117 HMGB1P26 high mobility group box 1 pseudogene 26 pseudogene pseudogene Approved 1q42.13 01q42.13 high-mobility group box 1 pseudogene 26 2010-10-18 2011-04-05 2016-08-16 645201 ENSG00000225984 OTTHUMG00000039468 NG_022758 12727900 PGOHUM00000296094 +HGNC:39118 HMGB1P27 high mobility group box 1 pseudogene 27 pseudogene pseudogene Approved 2q32.3 02q32.3 high-mobility group box 1 pseudogene 27 2010-10-18 2011-04-05 2016-08-16 100527948 ENSG00000230611 OTTHUMG00000154510 NG_027985 12727900 PGOHUM00000298816 +HGNC:39119 HMGB1P28 high mobility group box 1 pseudogene 28 pseudogene pseudogene Approved 4p13 04p13 high-mobility group box 1 pseudogene 28 2010-10-18 2011-04-05 2016-08-16 100133310 ENSG00000249745 OTTHUMG00000160533 NG_029031 12727900 PGOHUM00000299805 +HGNC:39120 HMGB1P29 high mobility group box 1 pseudogene 29 pseudogene pseudogene Approved 5q23.2 05q23.2 high-mobility group box 1 pseudogene 29 2010-10-18 2011-04-05 2013-09-24 100873892 ENSG00000250862 OTTHUMG00000162979 NG_032227 12727900 PGOHUM00000264319 +HGNC:39121 HMGB1P30 high mobility group box 1 pseudogene 30 pseudogene pseudogene Approved 3q24 03q24 high-mobility group box 1 pseudogene 30 2010-10-18 2011-04-05 2016-08-16 100873893 ENSG00000244089 OTTHUMG00000159519 NG_032228 12727900 PGOHUM00000299217 +HGNC:39122 HMGB1P31 high mobility group box 1 pseudogene 31 pseudogene pseudogene Approved 2p16.2 02p16.2 high-mobility group box 1 pseudogene 31 2010-10-18 2011-04-05 2011-09-21 100873894 ENSG00000233266 OTTHUMG00000152407 NG_032229 12727900 PGOHUM00000240645 +HGNC:39123 HMGB1P32 high mobility group box 1 pseudogene 32 pseudogene pseudogene Approved Xq21.33 Xq21.33 high-mobility group box 1 pseudogene 32 2010-10-18 2011-04-05 2016-08-16 100419995 ENSG00000226837 OTTHUMG00000021995 NG_026863 12727900 PGOHUM00000305206 +HGNC:39124 HMGB1P33 high mobility group box 1 pseudogene 33 pseudogene pseudogene Approved 15q21.3 15q21.3 high-mobility group box 1 pseudogene 33 2010-10-18 2011-04-05 2016-08-16 100873905 ENSG00000261174 OTTHUMG00000172638 NG_032230 12727900 PGOHUM00000293246 +HGNC:23342 HMGB1P34 high mobility group box 1 pseudogene 34 pseudogene pseudogene Approved 14q24.1 14q24.1 high-mobility group box 1 pseudogene 34 2010-10-18 2011-04-05 2011-09-21 100420100 NG_027382 12727900 PGOHUM00000248208 +HGNC:39175 HMGB1P35 high mobility group box 1 pseudogene 35 pseudogene pseudogene Approved 5q13.3 05q13.3 high-mobility group box 1 pseudogene 35 2010-11-02 2011-04-05 2012-03-12 100419950 ENSG00000251566 OTTHUMG00000162472 NG_024688 12727900 PGOHUM00000235663 +HGNC:39176 HMGB1P36 high mobility group box 1 pseudogene 36 pseudogene pseudogene Approved 3p13 03p13 high-mobility group box 1 pseudogene 36 2010-11-02 2011-04-05 2011-09-21 100419968 ENSG00000243873 OTTHUMG00000158798 NG_025706 12727900 PGOHUM00000238058 +HGNC:39184 HMGB1P37 high mobility group box 1 pseudogene 37 pseudogene pseudogene Approved 9q33.2 09q33.2 high-mobility group box 1 pseudogene 37 2010-11-17 2011-04-05 2011-09-21 100132863 ENSG00000213467 OTTHUMG00000020593 NG_021636 12727900 PGOHUM00000236327 +HGNC:39185 HMGB1P38 high mobility group box 1 pseudogene 38 pseudogene pseudogene Approved 3p12.2 03p12.2 high-mobility group box 1 pseudogene 38 2010-11-17 2011-04-05 2011-09-21 100873895 ENSG00000243877 OTTHUMG00000158930 NG_032232 12727900 PGOHUM00000250248 +HGNC:39186 HMGB1P39 high mobility group box 1 pseudogene 39 pseudogene pseudogene Approved 6q14.1 06q14.1 high-mobility group box 1 pseudogene 39 2010-11-17 2011-04-05 2011-09-21 100419972 ENSG00000203489 OTTHUMG00000015052 NG_025834 12727900 PGOHUM00000243253 +HGNC:39187 HMGB1P40 high mobility group box 1 pseudogene 40 pseudogene pseudogene Approved 11p15.1 11p15.1 high-mobility group box 1 pseudogene 40 2010-11-17 2011-04-05 2016-08-16 100506595 ENSG00000255291 OTTHUMG00000166023 NG_027946 12727900 PGOHUM00000290841 +HGNC:39188 HMGB1P41 high mobility group box 1 pseudogene 41 pseudogene pseudogene Approved 8q21.13 08q21.13 high-mobility group box 1 pseudogene 41 2010-11-17 2011-04-05 2011-09-21 100873896 ENSG00000253516 OTTHUMG00000164591 NG_032233 12727900 PGOHUM00000249404 +HGNC:39189 HMGB1P42 high mobility group box 1 pseudogene 42 pseudogene pseudogene Approved 11q23.3 11q23.3 high-mobility group box 1 pseudogene 42 2010-11-17 2011-04-05 2015-08-25 100873906 ENSG00000254735 OTTHUMG00000166093 NG_032234 12727900 PGOHUM00000290728 +HGNC:39191 HMGB1P43 high mobility group box 1 pseudogene 43 pseudogene pseudogene Approved 15q25.3 15q25.3 high-mobility group box 1 pseudogene 43 2010-11-17 2011-04-05 2011-09-21 100420041 NG_025349 12727900 PGOHUM00000246908 +HGNC:39275 HMGB1P44 high mobility group box 1 pseudogene 44 pseudogene pseudogene Approved 4q21.1 04q21.1 high-mobility group box 1 pseudogene 44 2010-11-25 2011-04-05 2011-09-21 100130279 ENSG00000248956 OTTHUMG00000160848 NG_022063 12727900 PGOHUM00000245972 +HGNC:39277 HMGB1P45 high mobility group box 1 pseudogene 45 pseudogene pseudogene Approved 1p32.3 01p32.3 high-mobility group box 1 pseudogene 45 2010-11-25 2011-04-05 2011-09-21 100129919 ENSG00000229316 OTTHUMG00000007881 NG_022721 12727900 PGOHUM00000244020 +HGNC:39279 HMGB1P46 high mobility group box 1 pseudogene 46 pseudogene pseudogene Approved 8q23.1 08q23.1 high-mobility group box 1 pseudogene 46 2010-11-25 2011-04-05 2011-09-21 100419978 ENSG00000254146 OTTHUMG00000164810 NG_026068 12727900 PGOHUM00000249477 +HGNC:39280 HMGB1P47 high mobility group box 1 pseudogene 47 pseudogene pseudogene Approved 5q11.2 05q11.2 high-mobility group box 1 pseudogene 47 2010-11-25 2011-04-05 2016-08-16 100873897 ENSG00000249338 OTTHUMG00000162403 NG_032241 12727900 PGOHUM00000300580 +HGNC:39281 HMGB1P48 high mobility group box 1 pseudogene 48 pseudogene pseudogene Approved 1p34.1 01p34.1 high-mobility group box 1 pseudogene 48 2010-11-26 2011-04-05 2011-09-21 100128639 ENSG00000234379 OTTHUMG00000007743 NG_028928 12727900 PGOHUM00000251113 +HGNC:39282 HMGB1P49 high mobility group box 1 pseudogene 49 pseudogene pseudogene Approved 12p11.22 12p11.22 high-mobility group box 1 pseudogene 49 2010-11-26 2011-04-05 2011-09-21 100420013 NG_024073 12727900 PGOHUM00000239713 +HGNC:52368 HMGB1P50 high mobility group box 1 pseudogene 50 pseudogene pseudogene Approved 10q11.23 10q11.23 2016-08-16 2016-08-16 ENSG00000271237 OTTHUMG00000184651 PGOHUM00000290153 +HGNC:52369 HMGB1P51 high mobility group box 1 pseudogene 51 pseudogene pseudogene Approved 15q21.3 15q21.3 2016-08-16 2016-08-16 ENSG00000270986 OTTHUMG00000184879 PGOHUM00000293256 +HGNC:5000 HMGB2 high mobility group box 2 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 HMG2 "high-mobility group (nonhistone chromosomal) protein 2|high-mobility group box 2" Canonical high mobility group 511 1993-12-13 2002-08-16 2011-04-05 2016-10-05 3148 ENSG00000164104 OTTHUMG00000160799 uc003itb.3 NM_001130688 CCDS3816 P26583 1754403 MGI:96157 RGD:69291 HMGB2 163906 +HGNC:39174 HMGB2P1 high mobility group box 2 pseudogene 1 pseudogene pseudogene Approved 19p13.3 19p13.3 high-mobility group box 2 pseudogene 1 2010-11-02 2011-04-05 2012-10-03 729119 ENSG00000267736 OTTHUMG00000180117 NG_021754 PGOHUM00000234464 +HGNC:5004 HMGB3 high mobility group box 3 protein-coding gene gene with protein product Approved Xq28 Xq28 "HMG2A|MGC90319" non-histone chromosomal protein HMG4 "high-mobility group (nonhistone chromosomal) protein 4|high-mobility group box 3" Canonical high mobility group 511 1997-12-12 2002-08-16 2011-04-05 2015-09-11 3149 ENSG00000029993 OTTHUMG00000024162 uc004fep.4 AF274572 NM_005342 CCDS35428 O15347 9598312 MGI:1098219 RGD:1564407 HMGB3 300193 +HGNC:16240 HMGB3P1 high mobility group box 3 pseudogene 1 pseudogene pseudogene Approved 20q11.22 20q11.22 dJ18C9.3 "HMG4L|HMGB3L1" "high-mobility group (nonhistone chromosomal) protein 4-like|high-mobility group box 3-like 1|high-mobility group box 3 pseudogene 1" 2001-07-17 2010-11-02 2011-04-05 2013-10-11 128872 ENSG00000225336 OTTHUMG00000032313 AL049709 NR_002165 12727900 PGOHUM00000250542 +HGNC:16574 HMGB3P2 high mobility group box 3 pseudogene 2 pseudogene pseudogene Approved 20q11.23 20q11.23 dJ550H1.1 "HMG4L2|HMGB3L2" "high-mobility group (nonhistone chromosomal) protein 4-like 2|high-mobility group box 3-like 2|high-mobility group box 3 pseudogene 2" 2001-09-17 2010-11-02 2011-04-05 2011-09-21 128879 ENSG00000231470 OTTHUMG00000032373 AL035420 NG_000979 12727900 PGOHUM00000247525 +HGNC:39102 HMGB3P3 high mobility group box 3 pseudogene 3 pseudogene pseudogene Approved 5p15.32 05p15.32 high-mobility group box 3 pseudogene 3 2010-11-02 2011-04-05 2012-03-12 100419949 ENSG00000250730 OTTHUMG00000161681 NG_024651 12727900 PGOHUM00000257121 +HGNC:39104 HMGB3P4 high mobility group box 3 pseudogene 4 pseudogene pseudogene Approved 13q32.3 13q32.3 high-mobility group box 3 pseudogene 4 2010-11-02 2011-04-05 2016-08-16 100873890 ENSG00000228808 OTTHUMG00000017268 NG_032225 12727900 PGOHUM00000292232 +HGNC:39105 HMGB3P5 high mobility group box 3 pseudogene 5 pseudogene pseudogene Approved 10q25.2 10q25.2 high-mobility group box 3 pseudogene 5 2010-11-02 2011-04-05 2016-08-16 645360 ENSG00000237642 OTTHUMG00000019038 NG_022191 12727900 PGOHUM00000290282 +HGNC:39283 HMGB3P6 high mobility group box 3 pseudogene 6 pseudogene pseudogene Approved 1q23.3 01q23.3 high-mobility group box 3 pseudogene 6 2010-11-26 2011-04-05 2011-09-21 729952 ENSG00000213070 OTTHUMG00000034279 NG_022815 12727900 PGOHUM00000245054 +HGNC:39299 HMGB3P7 high mobility group box 3 pseudogene 7 pseudogene pseudogene Approved 13q33.1 13q33.1 high-mobility group box 3 pseudogene 7 2010-11-26 2011-04-05 2011-09-21 100420033 ENSG00000215399 OTTHUMG00000017297 NG_024948 12727900 PGOHUM00000256736 +HGNC:39300 HMGB3P8 high mobility group box 3 pseudogene 8 pseudogene pseudogene Approved 10q25.3 10q25.3 high-mobility group box 3 pseudogene 8 2010-11-26 2011-04-05 2011-09-21 100506039 ENSG00000227096 OTTHUMG00000019101 NG_028968 12727900 PGOHUM00000251257 +HGNC:39301 HMGB3P9 high mobility group box 3 pseudogene 9 pseudogene pseudogene Approved 1p22.1 01p22.1 high-mobility group box 3 pseudogene 9 2010-11-26 2011-04-05 2011-09-21 100873879 ENSG00000229992 OTTHUMG00000010900 NG_032244 12727900 PGOHUM00000244102 +HGNC:39302 HMGB3P10 high mobility group box 3 pseudogene 10 pseudogene pseudogene Approved 1p21.2 01p21.2 high-mobility group box 3 pseudogene 10 2010-11-26 2011-04-05 2011-09-21 100129320 ENSG00000223656 OTTHUMG00000010767 NG_028926 12727900 PGOHUM00000251118 +HGNC:39303 HMGB3P11 high mobility group box 3 pseudogene 11 pseudogene pseudogene Approved 2q12.1 02q12.1 high-mobility group box 3 pseudogene 11 2010-11-26 2011-04-05 2011-09-21 644442 ENSG00000213301 OTTHUMG00000153069 NG_021574 12727900 PGOHUM00000240825 +HGNC:39304 HMGB3P12 high mobility group box 3 pseudogene 12 pseudogene pseudogene Approved 3p24.2 03p24.2 high-mobility group box 3 pseudogene 12 2010-11-26 2011-04-05 2011-09-21 100873898 ENSG00000237603 OTTHUMG00000155598 NG_032245 12727900 PGOHUM00000250280 +HGNC:39305 HMGB3P13 high mobility group box 3 pseudogene 13 pseudogene pseudogene Approved 3q22.2 03q22.2 high-mobility group box 3 pseudogene 13 2010-11-26 2011-04-05 2011-09-21 100289158 ENSG00000214288 OTTHUMG00000159770 NG_022274 12727900 PGOHUM00000238203 +HGNC:39306 HMGB3P14 high mobility group box 3 pseudogene 14 pseudogene pseudogene Approved 3q22.2 03q22.2 high-mobility group box 3 pseudogene 14 2010-11-26 2011-04-05 2011-09-21 100873899 ENSG00000231845 OTTHUMG00000159747 NG_032246 12727900 PGOHUM00000250307 +HGNC:39307 HMGB3P15 high mobility group box 3 pseudogene 15 pseudogene pseudogene Approved 4q22.2 04q22.2 high-mobility group box 3 pseudogene 15 2010-11-26 2011-04-05 2016-10-05 644429 ENSG00000250897 OTTHUMG00000160930 NG_022021 12727900 PGOHUM00000245625 +HGNC:39308 HMGB3P16 high mobility group box 3 pseudogene 16 pseudogene pseudogene Approved 5q22.2 05q22.2 high-mobility group box 3 pseudogene 16 2010-11-26 2011-04-05 2011-09-21 100873900 ENSG00000248430 OTTHUMG00000162897 NG_032247 12727900 PGOHUM00000257110 +HGNC:39309 HMGB3P17 high mobility group box 3 pseudogene 17 pseudogene pseudogene Approved 5q23.2 05q23.2 high-mobility group box 3 pseudogene 17 2010-11-26 2011-04-05 2011-09-21 100419948 ENSG00000249400 OTTHUMG00000162975 NG_024626 12727900 PGOHUM00000257112 +HGNC:39310 HMGB3P18 high mobility group box 3 pseudogene 18 pseudogene pseudogene Approved 6q22.31 06q22.31 high-mobility group box 3 pseudogene 18 2010-11-26 2011-04-05 2011-09-21 644502 ENSG00000220184 OTTHUMG00000015485 NG_022325 12727900 PGOHUM00000243348 +HGNC:39311 HMGB3P19 high mobility group box 3 pseudogene 19 pseudogene pseudogene Approved 6q25.2 06q25.2 high-mobility group box 3 pseudogene 19 2010-11-26 2011-04-05 2011-09-21 729635 ENSG00000217085 OTTHUMG00000015868 NG_022333 12727900 PGOHUM00000250189 +HGNC:39312 HMGB3P20 high mobility group box 3 pseudogene 20 pseudogene pseudogene Approved 7p15.2 07p15.2 high-mobility group box 3 pseudogene 20 2010-11-26 2011-04-05 2011-09-21 442661 ENSG00000226059 OTTHUMG00000033539 NG_022531 12727900 PGOHUM00000250856 +HGNC:39313 HMGB3P21 high mobility group box 3 pseudogene 21 pseudogene pseudogene Approved 7q21.3 07q21.3 high-mobility group box 3 pseudogene 21 2010-11-26 2011-04-05 2011-09-21 100873901 ENSG00000224551 OTTHUMG00000154299 NG_032248 12727900 +HGNC:39314 HMGB3P22 high mobility group box 3 pseudogene 22 pseudogene pseudogene Approved 5q35.3 05q35.3 high-mobility group box 3 pseudogene 22 2010-11-26 2011-04-05 2011-09-21 729595 ENSG00000225051 OTTHUMG00000163166 NG_028953 12727900 PGOHUM00000251403 +HGNC:39315 HMGB3P23 high mobility group box 3 pseudogene 23 pseudogene pseudogene Approved 9p21.1 09p21.1 high-mobility group box 3 pseudogene 23 2010-11-26 2011-04-05 2011-09-21 100288563 ENSG00000235148 OTTHUMG00000019738 NG_028956 12727900 PGOHUM00000250489 +HGNC:39316 HMGB3P24 high mobility group box 3 pseudogene 24 pseudogene pseudogene Approved 9p13.2 09p13.2 high-mobility group box 3 pseudogene 24 2010-11-26 2011-04-05 2010-11-26 646993 ENSG00000215283 OTTHUMG00000019902 NG_029027 12727900 PGOHUM00000250495 +HGNC:39317 HMGB3P25 high mobility group box 3 pseudogene 25 pseudogene pseudogene Approved 11q14.2 11q14.2 high-mobility group box 3 pseudogene 25 2010-11-26 2011-04-05 2010-11-29 100873908 NG_032249 12727900 PGOHUM00000242401 +HGNC:39318 HMGB3P26 high mobility group box 3 pseudogene 26 pseudogene pseudogene Approved 14q32.32 14q32.32 high-mobility group box 3 pseudogene 26 2010-11-26 2011-04-05 2012-10-03 100130405 ENSG00000259428 OTTHUMG00000171840 NG_022849 12727900 PGOHUM00000247898 +HGNC:39319 HMGB3P27 high mobility group box 3 pseudogene 27 pseudogene pseudogene Approved 17q21.2 17q21.2 high-mobility group box 3 pseudogene 27 2010-11-26 2011-04-05 2011-09-21 441795 ENSG00000267132 OTTHUMG00000180639 NG_028178 12727900 HMGB3P27 PGOHUM00000250837 +HGNC:39320 HMGB3P28 high mobility group box 3 pseudogene 28 pseudogene pseudogene Approved 18p11.21 18p11.21 high-mobility group box 3 pseudogene 28 2010-11-26 2011-04-05 2011-09-21 100131036 NG_022487 12727900 PGOHUM00000256833 +HGNC:39321 HMGB3P29 high mobility group box 3 pseudogene 29 pseudogene pseudogene Approved 19p13.11 19p13.11 high-mobility group box 3 pseudogene 29 2010-11-29 2011-04-05 2011-09-21 100420015 NG_024158 12727900 PGOHUM00000234192 +HGNC:39333 HMGB3P30 high mobility group box 3 pseudogene 30 pseudogene pseudogene Approved Xq23 Xq23 high-mobility group box 3 pseudogene 30 2010-11-29 2011-04-05 2010-11-29 203510 ENSG00000213652 OTTHUMG00000022215 NG_022892 12727900 HMGB3P30 PGOHUM00000250085 +HGNC:39334 HMGB3P31 high mobility group box 3 pseudogene 31 pseudogene pseudogene Approved Xq26.3 Xq26.3 high-mobility group box 3 pseudogene 31 2010-11-29 2011-04-05 2011-09-21 392545 ENSG00000231929 OTTHUMG00000022463 NG_022638 12727900 PGOHUM00000250060 +HGNC:39335 HMGB3P32 high mobility group box 3 pseudogene 32 pseudogene pseudogene Approved 16q21 16q21 high-mobility group box 3 pseudogene 32 2010-11-29 2011-04-05 2011-09-21 100507549 ENSG00000260828 OTTHUMG00000176434 NG_028971 12727900 +HGNC:24954 HMGB4 high mobility group box 4 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 FLJ40388 high-mobility group box 4 Canonical high mobility group 511 2005-09-30 2011-04-05 2014-11-19 127540 ENSG00000176256 OTTHUMG00000013143 uc001bxp.3 NM_145205 CCDS30668 Q8WW32 MGI:1916567 RGD:1596426 HMGB4 +HGNC:5005 HMGCL 3-hydroxymethyl-3-methylglutaryl-CoA lyase protein-coding gene gene with protein product Approved 1p36.11 01p36.11 HL hydroxymethylglutaricaciduria 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase 1993-12-13 2010-04-30 2016-10-05 3155 ENSG00000117305 OTTHUMG00000002963 uc001bib.4 BC010570 NM_000191 "CCDS243|CCDS53279" P35914 "8102917|8978493" MGI:96158 RGD:620554 HMGCL 613898 122447 4.1.3.4 +HGNC:21359 HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "DKFZP434G1411|bA418P12.1" 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 2003-06-20 2016-06-10 2016-06-10 54511 ENSG00000146151 OTTHUMG00000014902 uc003pco.4 AK055075 XM_166383 "CCDS43474|CCDS43475|CCDS75472|CCDS75473" Q8TB92 "8619474|9110174" MGI:2446108 RGD:1565090 HMGCLL1 +HGNC:5006 HMGCR 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "hydroxymethylglutaryl-CoA reductase|3-hydroxy-3-methylglutaryl CoA reductase (NADPH)" 3-hydroxy-3-methylglutaryl-Coenzyme A reductase 2001-06-22 2010-04-30 2016-10-05 3156 ENSG00000113161 OTTHUMG00000102069 uc003kdp.4 NM_000859 "CCDS4027|CCDS47234" P04035 MGI:96159 RGD:2803 HMGCR 142910 objectId:639 "1.1.1.88|1.1.1.34" +HGNC:5007 HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding gene gene with protein product Approved 5p12 05p12 3-hydroxy-3-methylglutaryl coenzyme A (HMG-CoA) synthase HMGCS "3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1 (soluble)|3-hydroxy-3-methylglutaryl-CoA synthase 1 (soluble)" 2001-06-22 2015-11-26 2016-01-15 3157 ENSG00000112972 OTTHUMG00000162231 uc003jnq.6 NM_001324222 CCDS34154 Q01581 MGI:107592 RGD:70970 HMGCS1 142940 objectId:638 2.3.3.10 +HGNC:5008 HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding gene gene with protein product Approved 1p12 01p12 "3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial)|3-hydroxy-3-methylglutaryl-CoA synthase 2 (mitochondrial)" 1994-05-17 2016-01-21 2016-10-12 3158 ENSG00000134240 OTTHUMG00000012101 uc001eid.4 BC044217 NM_005518 "CCDS905|CCDS53353" P54868 "7851882|7893153" MGI:101939 RGD:2804 LRG_447|http://www.lrg-sequence.org/LRG/LRG_447 HMGCS2 600234 122453 objectId:2432 2.3.3.10 +HGNC:4984 HMGN1 high mobility group nucleosome binding domain 1 protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "FLJ27265|FLJ31471|MGC104230|MGC117425" "high-mobility group nucleosome binding 1|nonhistone chromosomal protein HMG-14" HMG14 "high-mobility group (nonhistone chromosomal) protein 14|high-mobility group nucleosome binding domain 1" Canonical high mobility group 511 1988-07-19 2002-08-16 2011-04-05 2016-10-05 3150 ENSG00000205581 OTTHUMG00000066178 uc002yxo.4 NM_004965 CCDS33559 P05114 "3782107|2563381" MGI:96120 RGD:1307761 HMGN1 163920 +HGNC:20015 HMGN1P1 high mobility group nucleosome binding domain 1 pseudogene 1 pseudogene pseudogene Approved 14q22.2 14q22.2 HMGN1L1 "high-mobility group nucleosome binding domain 1-like 1|high-mobility group nucleosome binding domain 1 pseudogene 1" 2003-01-13 2010-11-23 2011-04-05 2011-09-21 319131 NG_002509 12727900 PGOHUM00000247808 +HGNC:4985 HMGN1P2 high mobility group nucleosome binding domain 1 pseudogene 2 pseudogene pseudogene Approved 21q22.11 21q22.11 "HMG14P|HMGN1L2" "high-mobility group (nonhistone chromosomal) protein 14 pseudogene|high-mobility group nucleosome binding domain 1-like 2|high-mobility group nucleosome binding domain 1 pseudogene 2" 2000-05-23 2010-11-23 2011-04-05 2011-09-21 54048 ENSG00000229046 OTTHUMG00000084901 NG_000921 12727900 PGOHUM00000239162 +HGNC:23343 HMGN1P3 high mobility group nucleosome binding domain 1 pseudogene 3 pseudogene pseudogene Approved 14q24.1 14q24.1 high-mobility group nucleosome binding domain 1 pseudogene 3 2010-11-23 2011-04-05 2011-09-21 100036574 ENSG00000258967 OTTHUMG00000171667 NG_005988 12727900 PGOHUM00000247842 +HGNC:39336 HMGN1P4 high mobility group nucleosome binding domain 1 pseudogene 4 pseudogene pseudogene Approved 1q25.3 01q25.3 high-mobility group nucleosome binding domain 1 pseudogene 4 2010-11-29 2011-04-05 2011-09-21 100036575 ENSG00000224040 OTTHUMG00000041119 NG_005989 12727900 PGOHUM00000244362 +HGNC:39348 HMGN1P5 high mobility group nucleosome binding domain 1 pseudogene 5 pseudogene pseudogene Approved 1q23.1 01q23.1 high-mobility group nucleosome binding domain 1 pseudogene 5 2010-11-29 2011-04-05 2011-09-21 100874429 ENSG00000230942 OTTHUMG00000017511 NG_032257 12727900 PGOHUM00000244295 +HGNC:39349 HMGN1P6 high mobility group nucleosome binding domain 1 pseudogene 6 pseudogene pseudogene Approved 2q33.3 02q33.3 high-mobility group nucleosome binding domain 1 pseudogene 6 2010-11-29 2011-04-05 2011-09-21 100874430 ENSG00000224070 OTTHUMG00000154645 NG_032258 12727900 PGOHUM00000240500 +HGNC:39350 HMGN1P7 high mobility group nucleosome binding domain 1 pseudogene 7 pseudogene pseudogene Approved 3q11.1 03q11.1 high-mobility group nucleosome binding domain 1 pseudogene 7 2010-11-29 2011-04-05 2011-09-21 100129555 ENSG00000239614 OTTHUMG00000159010 NG_028937 12727900 PGOHUM00000237684 +HGNC:39351 HMGN1P8 high mobility group nucleosome binding domain 1 pseudogene 8 pseudogene pseudogene Approved 3q26.1 03q26.1 high-mobility group nucleosome binding domain 1 pseudogene 8 2010-11-29 2011-04-05 2011-09-21 100874431 ENSG00000241120 OTTHUMG00000158449 NG_032259 12727900 PGOHUM00000237853 +HGNC:39352 HMGN1P9 high mobility group nucleosome binding domain 1 pseudogene pseudogene pseudogene Approved 3q22.2 03q22.2 high-mobility group nucleosome binding domain 1 pseudogene 2010-11-29 2011-04-05 2011-09-21 100874410 ENSG00000248377 OTTHUMG00000159772 NG_032260 PGOHUM00000238202 +HGNC:39353 HMGN1P10 high mobility group nucleosome binding domain 1 pseudogene 10 pseudogene pseudogene Approved 3q22.3 03q22.3 high-mobility group nucleosome binding domain 1 pseudogene 10 2010-11-29 2011-04-05 2011-09-21 100874438 ENSG00000244101 OTTHUMG00000159802 NG_032261 PGOHUM00000238207 +HGNC:39355 HMGN1P11 high mobility group nucleosome binding domain 1 pseudogene 11 pseudogene pseudogene Approved 4q13.1 04q13.1 high-mobility group nucleosome binding domain 1 pseudogene 11 2010-11-30 2011-04-05 2011-09-21 644534 ENSG00000248336 OTTHUMG00000162341 NG_028944 12727900 PGOHUM00000245928 +HGNC:39356 HMGN1P12 high mobility group nucleosome binding domain 1 pseudogene 12 pseudogene pseudogene Approved 5q13.2 05q13.2 high-mobility group nucleosome binding domain 1 pseudogene 12 2010-11-30 2011-04-05 2011-09-21 106480725 ENSG00000247911 OTTHUMG00000163799 NG_043609 12727900 PGOHUM00000235269 +HGNC:39357 HMGN1P13 high mobility group nucleosome binding domain 1 pseudogene 13 pseudogene pseudogene Approved 5q22.1 05q22.1 high-mobility group nucleosome binding domain 1 pseudogene 13 2010-11-30 2011-04-05 2011-09-21 100874439 ENSG00000249619 OTTHUMG00000162843 NG_032262 12727900 PGOHUM00000235355 +HGNC:39358 HMGN1P14 high mobility group nucleosome binding domain 1 pseudogene 14 pseudogene pseudogene Approved 5q22.1 05q22.1 high-mobility group nucleosome binding domain 1 pseudogene 14 2010-11-30 2011-04-05 2011-09-21 100874440 ENSG00000249439 OTTHUMG00000162859 NG_032263 PGOHUM00000235356 +HGNC:39359 HMGN1P15 high mobility group nucleosome binding domain 1 pseudogene 15 pseudogene pseudogene Approved 5q22.3 05q22.3 high-mobility group nucleosome binding domain 1 pseudogene 15 2010-11-30 2011-04-05 2011-09-21 100874441 ENSG00000250197 OTTHUMG00000162909 NG_032264 12727900 PGOHUM00000235361 +HGNC:39360 HMGN1P16 high mobility group nucleosome binding domain 1 pseudogene 16 pseudogene pseudogene Approved 5q32 05q32 high-mobility group nucleosome binding domain 1 pseudogene 16 2010-11-30 2011-04-05 2011-09-21 100874442 ENSG00000249503 OTTHUMG00000163428 NG_032265 12727900 PGOHUM00000235419 +HGNC:39361 HMGN1P17 high mobility group nucleosome binding domain 1 pseudogene 17 pseudogene pseudogene Approved 5q11.2 05q11.2 high-mobility group nucleosome binding domain 1 pseudogene 17 2010-11-30 2011-04-05 2011-09-21 100874443 ENSG00000250787 OTTHUMG00000162299 NG_032266 12727900 PGOHUM00000235595 +HGNC:39362 HMGN1P18 high mobility group nucleosome binding domain 1 pseudogene 18 pseudogene pseudogene Approved 7q31.31 07q31.31 high-mobility group nucleosome binding domain 1 pseudogene 18 2010-11-30 2011-04-05 2011-09-21 100874444 ENSG00000234927 OTTHUMG00000156981 NG_032267 12727900 PGOHUM00000250963 +HGNC:39363 HMGN1P19 high mobility group nucleosome binding domain 1 pseudogene 19 pseudogene pseudogene Approved 7p12.3 07p12.3 high-mobility group nucleosome binding domain 1 pseudogene 19 2010-11-30 2011-04-05 2011-09-21 100874445 ENSG00000224519 OTTHUMG00000155468 NG_032268 12727900 PGOHUM00000233224 +HGNC:39364 HMGN1P20 high mobility group nucleosome binding domain 1 pseudogene 20 pseudogene pseudogene Approved 10p12.31 10p12.31 high-mobility group nucleosome binding domain 1 pseudogene 20 2010-11-30 2011-04-05 2011-09-21 100874459 ENSG00000239539 OTTHUMG00000017774 NG_032269 12727900 PGOHUM00000238683 +HGNC:39365 HMGN1P21 high mobility group nucleosome binding domain 1 pseudogene 21 pseudogene pseudogene Approved 11p15.4 11p15.4 high-mobility group nucleosome binding domain 1 pseudogene 21 2010-11-30 2011-04-05 2011-09-21 728325 NG_005987 12727900 PGOHUM00000242128 +HGNC:39366 HMGN1P22 high mobility group nucleosome binding domain 1 pseudogene 22 pseudogene pseudogene Approved 11p15.3 11p15.3 high-mobility group nucleosome binding domain 1 pseudogene 22 2010-11-30 2011-04-05 2011-09-21 100874460 NG_032270 12727900 PGOHUM00000242169 +HGNC:39367 HMGN1P23 high mobility group nucleosome binding domain 1 pseudogene 23 pseudogene pseudogene Approved 12p13.1 12p13.1 high-mobility group nucleosome binding domain 1 pseudogene 23 2010-11-30 2011-04-05 2011-09-21 100874461 NG_032271 12727900 PGOHUM00000239683 +HGNC:39368 HMGN1P24 high mobility group nucleosome binding domain 1 pseudogene 24 pseudogene pseudogene Approved 13q32.1 13q32.1 high-mobility group nucleosome binding domain 1 pseudogene 24 2010-11-30 2011-04-05 2011-09-21 100874462 ENSG00000226977 OTTHUMG00000017228 NG_032272 PGOHUM00000248467 +HGNC:39369 HMGN1P25 high mobility group nucleosome binding domain 1 pseudogene 25 pseudogene pseudogene Approved 14q32.2 14q32.2 high-mobility group nucleosome binding domain 1 pseudogene 25 2010-11-30 2011-04-05 2011-09-21 100507124 NG_028962 PGOHUM00000248267 +HGNC:39370 HMGN1P26 high mobility group nucleosome binding domain 1 pseudogene 26 pseudogene pseudogene Approved 15q22.2 15q22.2 high-mobility group nucleosome binding domain 1 pseudogene 26 2010-11-30 2011-04-05 2012-10-03 100128015 ENSG00000259557 OTTHUMG00000171962 NG_028963 12727900 PGOHUM00000246817 +HGNC:39371 HMGN1P27 high mobility group nucleosome binding domain 1 pseudogene 27 pseudogene pseudogene Approved 15q24.3 15q24.3 high-mobility group nucleosome binding domain 1 pseudogene 27 2010-11-30 2011-04-05 2011-09-21 100874463 NG_032273 12727900 PGOHUM00000247187 +HGNC:39372 HMGN1P28 high mobility group nucleosome binding domain 1 pseudogene 28 pseudogene pseudogene Approved 17q23.2 17q23.2 high-mobility group nucleosome binding domain 1 pseudogene 28 2010-11-30 2011-04-05 2011-09-21 100874464 ENSG00000254114 OTTHUMG00000163587 NG_032274 12727900 PGOHUM00000237460 +HGNC:39373 HMGN1P29 high mobility group nucleosome binding domain 1 pseudogene 29 pseudogene pseudogene Approved 17q21.31 17q21.31 high-mobility group nucleosome binding domain 1 pseudogene 29 2010-11-30 2011-04-05 2012-05-21 100885865 NG_032698 12727900 PGOHUM00000237403 +HGNC:39374 HMGN1P30 high mobility group nucleosome binding domain 1 pseudogene 30 pseudogene pseudogene Approved 18q21.31 18q21.31 high-mobility group nucleosome binding domain 1 pseudogene 30 2010-11-30 2011-04-05 2012-11-07 100132992 ENSG00000235028 OTTHUMG00000179874 NG_027555 12727900 PGOHUM00000263438 +HGNC:39375 HMGN1P31 high mobility group nucleosome binding domain 1 pseudogene 31 pseudogene pseudogene Approved 18q21.32 18q21.32 high-mobility group nucleosome binding domain 1 pseudogene 31 2010-11-30 2011-04-05 2011-09-21 728111 NG_027983 12727900 PGOHUM00000249929 +HGNC:39376 HMGN1P32 high mobility group nucleosome binding domain 1 pseudogene 32 pseudogene pseudogene Approved 19q13.42 19q13.42 high-mobility group nucleosome binding domain 1 pseudogene 32 2010-12-01 2011-04-05 2011-09-21 100874465 ENSG00000237589 OTTHUMG00000060742 NG_032275 12727900 PGOHUM00000234420 +HGNC:39377 HMGN1P33 high mobility group nucleosome binding domain 1 pseudogene 33 pseudogene pseudogene Approved Xp22.2 Xp22.2 high-mobility group nucleosome binding domain 1 pseudogene 33 2010-12-01 2011-04-05 2011-09-21 100874446 ENSG00000230326 OTTHUMG00000021120 NG_032276 12727900 PGOHUM00000241186 +HGNC:39378 HMGN1P34 high mobility group nucleosome binding domain 1 pseudogene 34 pseudogene pseudogene Approved Xq21.1 Xq21.1 high-mobility group nucleosome binding domain 1 pseudogene 34 2010-12-01 2011-04-05 2011-09-21 100874447 ENSG00000224755 OTTHUMG00000021890 NG_032277 12727900 PGOHUM00000241408 +HGNC:39379 HMGN1P35 high mobility group nucleosome binding domain 1 pseudogene 35 pseudogene pseudogene Approved Xq13.1 Xq13.1 high-mobility group nucleosome binding domain 1 pseudogene 35 2010-12-01 2011-04-05 2011-09-21 100874448 ENSG00000172186 OTTHUMG00000021752 NG_032278 12727900 PGOHUM00000241830 +HGNC:39380 HMGN1P36 high mobility group nucleosome binding domain 1 pseudogene 36 pseudogene pseudogene Approved 2q11.2 02q11.2 high-mobility group nucleosome binding domain 1 pseudogene 36 2010-12-01 2011-04-05 2011-09-21 728851 ENSG00000235734 OTTHUMG00000153063 NG_005985 12727900 +HGNC:39421 HMGN1P37 high mobility group nucleosome binding domain 1 pseudogene 37 pseudogene pseudogene Approved Xq28 Xq28 high-mobility group nucleosome binding domain 1 pseudogene 37 2010-12-07 2011-04-05 2012-10-03 728776 ENSG00000229237 OTTHUMG00000024241 NG_005984 12727900 PGOHUM00000241617 +HGNC:39422 HMGN1P38 high mobility group nucleosome binding domain 1 pseudogene 38 pseudogene pseudogene Approved 15q26.1 15q26.1 high-mobility group nucleosome binding domain 1 pseudogene 38 2010-12-07 2011-04-05 2011-09-21 643790 ENSG00000253954 OTTHUMG00000163610 NG_005986 12727900 +HGNC:4986 HMGN2 high mobility group nucleosomal binding domain 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 HMG17 "high-mobility group (nonhistone chromosomal) protein 17|high-mobility group nucleosomal binding domain 2" Canonical high mobility group 511 1988-07-19 2002-08-16 2011-04-05 2016-10-05 3151 ENSG00000198830 OTTHUMG00000003555 uc057dse.1 BC081567 NM_005517 CCDS283 P05204 2037294 MGI:96136 RGD:620649 HMGN2 163910 +HGNC:19930 HMGN2P1 high mobility group nucleosomal binding domain 2 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 "HMGN2P|HMGN2L1" "high-mobility group nucleosomal binding domain 2 pseudogene|high-mobility group nucleosomal binding domain 2-like 1|high-mobility group nucleosomal binding domain 2 pseudogene 1" 2003-01-13 2010-11-23 2011-04-05 2014-11-19 319132 NG_002510 12727900 +HGNC:20016 HMGN2P2 high mobility group nucleosomal binding domain 2 pseudogene 2 pseudogene pseudogene Approved 14q31.1 14q31.1 HMGN2L2 "high-mobility group nucleosomal binding domain 2-like 2|high-mobility group nucleosomal binding domain 2 pseudogene 2" 2003-01-13 2010-11-23 2011-04-05 2014-11-19 317726 NG_002460 12727900 +HGNC:33566 HMGN2P3 high mobility group nucleosomal binding domain 2 pseudogene 3 pseudogene pseudogene Approved 16p12.1 16p12.1 HMGN2L3 "high-mobility group nucleosomal binding domain 2-like 3|high-mobility group nucleosomal binding domain 2 pseudogene 3" 2007-08-03 2010-11-23 2011-04-05 2011-09-21 728632 ENSG00000230330 OTTHUMG00000059918 NG_005591 12727900 +HGNC:33567 HMGN2P4 high mobility group nucleosomal binding domain 2 pseudogene 4 pseudogene pseudogene Approved 5q13.3 05q13.3 HMGN2L4 "high-mobility group nucleosomal binding domain 2-like 4|high-mobility group nucleosomal binding domain 2 pseudogene 4" 2007-08-03 2010-11-23 2011-04-05 2011-09-21 643744 ENSG00000249014 OTTHUMG00000162400 NG_006596 12727900 +HGNC:33568 HMGN2P5 high mobility group nucleosomal binding domain 2 pseudogene 5 pseudogene pseudogene Approved 15q13.1 15q13.1 HMGN2L5 "high-mobility group nucleosomal binding domain 2-like 5|high-mobility group nucleosomal binding domain 2 pseudogene 5" 2007-08-03 2010-11-23 2011-04-05 2011-09-21 727795 ENSG00000234664 OTTHUMG00000172191 NG_006579 12727900 +HGNC:33574 HMGN2P6 high mobility group nucleosomal binding domain 2 pseudogene 6 pseudogene pseudogene Approved 14q12 14q12 HMGN2L6 "high-mobility group nucleosomal binding domain 2-like 6|high-mobility group nucleosomal binding domain 2 pseudogene 6" 2007-08-03 2010-11-23 2011-04-05 2012-10-05 643872 ENSG00000257179 OTTHUMG00000170312 NG_006597 12727900 PGOHUM00000258739 +HGNC:33575 HMGN2P7 high mobility group nucleosomal binding domain 2 pseudogene 7 pseudogene pseudogene Approved 3p25.1 03p25.1 HMGN2L7 "high-mobility group nucleosomal binding domain 2-like 7|high-mobility group nucleosomal binding domain 2 pseudogene 7" 2007-08-03 2010-11-23 2011-04-05 2011-09-21 644498 ENSG00000226427 OTTHUMG00000156873 NG_006600 12727900 +HGNC:31662 HMGN2P8 high mobility group nucleosomal binding domain 2 pseudogene 8 pseudogene pseudogene Approved 10q23.1 10q23.1 AC022394.1 HMGN2L8 "high-mobility group nucleosomal binding domain 2-like 8|high-mobility group nucleosomal binding domain 2 pseudogene 8" 2009-01-15 2010-11-23 2011-04-05 2014-11-19 100288691 ENSG00000212769 OTTHUMG00000018631 NG_027510 12727900 +HGNC:4987 HMGN2P9 high mobility group nucleosomal binding domain 2 pseudogene 9 pseudogene pseudogene Approved 22q13.31 22q13.31 dJ388M5.2 "HMG17L1|HMGN2L9" "high-mobility group (nonhistone chromosomal) protein 17-like 1|high-mobility group nucleosomal binding domain 2-like 9|high-mobility group nucleosomal binding domain 2 pseudogene 9" 1999-10-19 2010-11-23 2011-04-05 2011-09-21 23605 ENSG00000180150 OTTHUMG00000030777 NG_002646 "10591208|12727900" +HGNC:4988 HMGN2P10 high mobility group nucleosomal binding domain 2 pseudogene10 pseudogene pseudogene Approved 22q13.2 22q13.2 bK216E10 "HMG17L2|HMGN2L10" "high-mobility group (nonhistone chromosomal) protein 17-like 2|high-mobility group nucleosomal binding domain 2-like 10|high-mobility group nucleosomal binding domain 2 pseudogene10" 1999-10-19 2010-11-23 2011-04-05 2016-10-05 23606 ENSG00000231261 OTTHUMG00000151187 Z83840 NG_000892 "10591208|12727900" +HGNC:4990 HMGN2P11 high mobility group nucleosomal binding domain 2 pseudogene 11 pseudogene pseudogene Approved 7q21.11 07q21.11 28H "HMG17P1|HMGN2L11" "high-mobility group (nonhistone chromosomal) protein 17 pseudogene 1|high-mobility group nucleosomal binding domain 2-like 11|high-mobility group nucleosomal binding domain 2 pseudogene 11" 1988-07-19 2010-11-25 2011-04-05 2014-11-19 3152 ENSG00000232605 OTTHUMG00000154605 X06353 NG_001141 3441004 +HGNC:4991 HMGN2P12 high mobility group nucleosomal binding domain 2 pseudogene 12 pseudogene pseudogene Approved 6q21 06q21 60H "HMG17P2|HMGN2L12" "high-mobility group (nonhistone chromosomal) protein 17 pseudogene 2|high-mobility group nucleosomal binding domain 2-like 12|high-mobility group nucleosomal binding domain 2 pseudogene 12" 1988-07-19 2010-11-25 2011-04-05 2014-11-19 3153 X06444 NG_001142 3441004 +HGNC:33557 HMGN2P13 high mobility group nucleosomal binding domain 2 pseudogene 13 pseudogene pseudogene Approved 3q25.2 03q25.2 high-mobility group nucleosomal binding domain 2 pseudogene 13 2010-11-25 2011-04-05 2011-09-21 100289682 ENSG00000241810 OTTHUMG00000159686 NG_028936 12727900 +HGNC:23341 HMGN2P14 high mobility group nucleosomal binding domain 2 pseudogene14 pseudogene pseudogene Approved 14q23.2 14q23.2 high-mobility group nucleosomal binding domain 2 pseudogene14 2010-11-25 2011-04-05 2011-09-21 100874458 NG_032185 12727900 +HGNC:39020 HMGN2P15 high mobility group nucleosomal binding domain 2 pseudogene 15 pseudogene pseudogene Approved 17q21.2 17q21.2 high-mobility group nucleosomal binding domain 2 pseudogene 15 2010-11-25 2011-04-05 2016-10-05 100288165 ENSG00000214578 OTTHUMG00000180646 NG_028969 12727900 +HGNC:31330 HMGN2P16 high mobility group nucleosomal binding domain 2 pseudogene 16 pseudogene pseudogene Approved 9p22.3 09p22.3 Em:AL513423.2 HMGN2L "high-mobility group nucleosomal binding domain 2-like|high-mobility group nucleosomal binding domain 2 pseudogene 16" 2004-06-02 2010-11-25 2011-04-05 2014-11-19 728234 ENSG00000231376 OTTHUMG00000019585 NG_005991 12727900 +HGNC:39381 HMGN2P17 high mobility group nucleosomal binding domain 2 pseudogene 17 pseudogene pseudogene Approved 1p36.23 01p36.23 high-mobility group nucleosomal binding domain 2 pseudogene 17 2010-12-01 2011-04-05 2011-09-21 100113373 ENSG00000238249 OTTHUMG00000001781 NG_006598 12727900 +HGNC:39382 HMGN2P18 high mobility group nucleosomal binding domain 2 pseudogene 18 pseudogene pseudogene Approved 1q22 01q22 high-mobility group nucleosomal binding domain 2 pseudogene 18 2010-12-01 2011-04-05 2011-09-21 648822 ENSG00000223452 OTTHUMG00000013903 NG_027556 12727900 +HGNC:39383 HMGN2P19 high mobility group nucleosomal binding domain 2 pseudogene 19 pseudogene pseudogene Approved 1q42.13 01q42.13 high-mobility group nucleosomal binding domain 2 pseudogene 19 2010-12-01 2011-04-05 2011-09-21 100874466 ENSG00000229367 OTTHUMG00000039469 NG_032279 12727900 +HGNC:39385 HMGN2P20 high mobility group nucleosomal binding domain 2 pseudogene 20 pseudogene pseudogene Approved 2p23.3 02p23.3 high-mobility group nucleosomal binding domain 2 pseudogene 20 2010-12-01 2011-04-05 2012-05-29 646049 ENSG00000232963 OTTHUMG00000157047 NG_029250 12727900 +HGNC:39386 HMGN2P21 high mobility group nucleosomal binding domain 2 pseudogene 21 pseudogene pseudogene Approved 2p13.3 02p13.3 high-mobility group nucleosomal binding domain 2 pseudogene 21 2010-12-01 2011-04-05 2011-09-21 100874467 ENSG00000228034 OTTHUMG00000154079 NG_032280 12727900 +HGNC:39387 HMGN2P22 high mobility group nucleosomal binding domain 2 pseudogene 22 pseudogene pseudogene Approved 2q11.2 02q11.2 high-mobility group nucleosomal binding domain 2 pseudogene 22 2010-12-01 2011-04-05 2011-09-21 100874468 ENSG00000227259 OTTHUMG00000153161 NG_032281 12727900 +HGNC:39388 HMGN2P23 high mobility group nucleosomal binding domain 2 pseudogene 23 pseudogene pseudogene Approved 2q14.1 02q14.1 high-mobility group nucleosomal binding domain 2 pseudogene 23 2010-12-01 2011-04-05 2016-10-06 100874469 ENSG00000236124 OTTHUMG00000153321 NG_032282 12727900 +HGNC:39389 HMGN2P24 high mobility group nucleosomal binding domain 2 pseudogene 24 pseudogene pseudogene Approved 3p22.1 03p22.1 high-mobility group nucleosomal binding domain 2 pseudogene 24 2010-12-02 2011-04-05 2011-09-21 729505 ENSG00000229072 OTTHUMG00000156010 NG_027554 12727900 +HGNC:39392 HMGN2P25 high mobility group nucleosomal binding domain 2 pseudogene 25 pseudogene pseudogene Approved 3q23 03q23 high-mobility group nucleosomal binding domain 2 pseudogene 25 2010-12-02 2011-04-05 2011-09-21 729687 ENSG00000228398 OTTHUMG00000159069 NG_027552 12727900 +HGNC:39393 HMGN2P26 high mobility group nucleosomal binding domain 2 pseudogene 26 pseudogene pseudogene Approved 3q26.2 03q26.2 high-mobility group nucleosomal binding domain 2 pseudogene 26 2010-12-02 2011-04-05 2011-09-21 100874470 ENSG00000241203 OTTHUMG00000158561 NG_032284 12727900 +HGNC:39394 HMGN2P27 high mobility group nucleosomal binding domain 2 pseudogene 27 pseudogene pseudogene Approved 5q23.1 05q23.1 high-mobility group nucleosomal binding domain 2 pseudogene 27 2010-12-02 2011-04-05 2011-09-21 100874471 ENSG00000232916 OTTHUMG00000162924 NG_032285 12727900 +HGNC:39395 HMGN2P28 high mobility group nucleosomal binding domain 2 pseudogene 28 pseudogene pseudogene Approved 6p25.2 06p25.2 high-mobility group nucleosomal binding domain 2 pseudogene 28 2010-12-02 2011-04-05 2011-09-21 100128372 ENSG00000236086 OTTHUMG00000185340 NG_027664 12727900 +HGNC:39396 HMGN2P29 high mobility group nucleosomal binding domain 2 pseudogene 29 pseudogene pseudogene Approved 6q22.31 06q22.31 high-mobility group nucleosomal binding domain 2 pseudogene 29 2010-12-02 2011-04-05 2012-10-03 100874472 NG_032286 12727900 +HGNC:39397 HMGN2P30 high mobility group nucleosomal binding domain 2 pseudogene 30 pseudogene pseudogene Approved 7p14.1 07p14.1 high-mobility group nucleosomal binding domain 2 pseudogene 30 2010-12-02 2011-04-05 2011-09-21 100131183 ENSG00000213721 OTTHUMG00000155127 NG_008434 12727900 +HGNC:39398 HMGN2P31 high mobility group nucleosomal binding domain 2 pseudogene 31 pseudogene pseudogene Approved 9p24.1 09p24.1 high-mobility group nucleosomal binding domain 2 pseudogene 31 2010-12-02 2011-04-05 2011-09-21 645930 ENSG00000214195 OTTHUMG00000019497 NG_028976 12727900 +HGNC:39403 HMGN2P32 high mobility group nucleosomal binding domain 2 pseudogene 32 pseudogene pseudogene Approved 9q31.2 09q31.2 high-mobility group nucleosomal binding domain 2 pseudogene 32 2010-12-03 2011-04-05 2011-09-21 100874473 ENSG00000213558 OTTHUMG00000020448 NG_032289 12727900 +HGNC:39404 HMGN2P33 high mobility group nucleosomal binding domain 2 pseudogene 33 pseudogene pseudogene Approved 9q21.32 09q21.32 high-mobility group nucleosomal binding domain 2 pseudogene 33 2010-12-03 2011-04-05 2012-10-03 100874474 NG_032290 12727900 +HGNC:39405 HMGN2P34 high mobility group nucleosomal binding domain 2 pseudogene 34 pseudogene pseudogene Approved 10q22.1 10q22.1 high-mobility group nucleosomal binding domain 2 pseudogene 34 2010-12-03 2011-04-05 2011-09-21 100874478 ENSG00000231471 OTTHUMG00000018438 NG_032291 12727900 +HGNC:39406 HMGN2P35 high mobility group nucleosomal binding domain 2 pseudogene 35 pseudogene pseudogene Approved 10q24.1 10q24.1 high-mobility group nucleosomal binding domain 2 pseudogene 35 2010-12-03 2011-04-05 2011-09-21 100874479 ENSG00000232875 OTTHUMG00000018839 NG_032292 12727900 +HGNC:39407 HMGN2P36 high mobility group nucleosomal binding domain 2 pseudogene 36 pseudogene pseudogene Approved 11p15.2 11p15.2 high-mobility group nucleosomal binding domain 2 pseudogene 36 2010-12-03 2011-04-05 2016-10-06 100874480 ENSG00000228901 OTTHUMG00000165786 NG_032293 12727900 +HGNC:39408 HMGN2P37 high mobility group nucleosomal binding domain 2 pseudogene 37 pseudogene pseudogene Approved 11p11.2 11p11.2 high-mobility group nucleosomal binding domain 2 pseudogene 37 2010-12-03 2011-04-05 2011-09-21 100874481 NG_032294 12727900 +HGNC:39409 HMGN2P38 high mobility group nucleosomal binding domain 2 pseudogene 38 pseudogene pseudogene Approved 11q13.4 11q13.4 high-mobility group nucleosomal binding domain 2 pseudogene 38 2010-12-03 2011-04-05 2012-10-05 100874482 ENSG00000231726 OTTHUMG00000167999 NG_032295 12727900 +HGNC:39410 HMGN2P39 high mobility group nucleosomal binding domain 2 pseudogene 39 pseudogene pseudogene Approved 13q21.1 13q21.1 high-mobility group nucleosomal binding domain 2 pseudogene 39 2010-12-03 2011-04-05 2011-09-21 100874483 ENSG00000214281 OTTHUMG00000017000 NG_032296 12727900 +HGNC:39411 HMGN2P40 high mobility group nucleosomal binding domain 2 pseudogene 40 pseudogene pseudogene Approved 15q23 15q23 high-mobility group nucleosomal binding domain 2 pseudogene 40 2010-12-03 2011-04-05 2012-10-03 100874484 ENSG00000260602 OTTHUMG00000172681 NG_032297 12727900 +HGNC:39412 HMGN2P41 high mobility group nucleosomal binding domain 2 pseudogene 41 pseudogene pseudogene Approved 16p11.1 16p11.1 high-mobility group nucleosomal binding domain 2 pseudogene 41 2010-12-03 2011-04-05 2011-09-21 729564 ENSG00000261620 OTTHUMG00000176023 NG_006599 12727900 +HGNC:39413 HMGN2P42 high mobility group nucleosomal binding domain 2 pseudogene 42 pseudogene pseudogene Approved 17q23.2 17q23.2 high-mobility group nucleosomal binding domain 2 pseudogene 42 2010-12-03 2011-04-05 2013-01-23 100874485 NG_032298 12727900 +HGNC:39414 HMGN2P43 high mobility group nucleosomal binding domain 2 pseudogene 43 pseudogene pseudogene Approved 17q25.1 17q25.1 high-mobility group nucleosomal binding domain 2 pseudogene 43 2010-12-03 2011-04-05 2011-09-21 100874486 NG_032299 12727900 +HGNC:39415 HMGN2P44 high mobility group nucleosomal binding domain 2 pseudogene 44 pseudogene pseudogene Approved 18q12.1 18q12.1 high-mobility group nucleosomal binding domain 2 pseudogene 44 2010-12-03 2011-04-05 2011-09-21 100874487 NG_032582 12727900 +HGNC:39416 HMGN2P45 high mobility group nucleosomal binding domain 2 pseudogene 45 pseudogene pseudogene Approved Xp22.13 Xp22.13 high-mobility group nucleosomal binding domain 2 pseudogene 45 2010-12-03 2011-04-05 2011-09-21 100874475 NG_032301 12727900 +HGNC:26817 HMGN2P46 high mobility group nucleosomal binding domain 2 pseudogene 46 pseudogene pseudogene Approved 15q21.1 15q21.1 "FLJ39426|D-PCa-2" C15orf21 "chromosome 15 open reading frame 21|high-mobility group nucleosomal binding domain 2 pseudogene 46" 2004-02-23 2010-12-07 2011-04-05 2016-10-05 283651 ENSG00000179362 OTTHUMG00000153087 AK096745 NR_022014 Q86SG4 "15027122|12727900|24043589" 611314 +HGNC:44422 HMGN2P47 high mobility group nucleosomal binding domain 2 pseudogene 47 pseudogene pseudogene Approved 15q22.33 15q22.33 2012-10-08 2016-10-06 106480791 ENSG00000259246 OTTHUMG00000172244 NG_044102 +HGNC:12312 HMGN3 high mobility group nucleosomal binding domain 3 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 TRIP7 thyroid hormone receptor interactor 7 Canonical high mobility group 511 1999-03-19 2002-07-26 2002-07-25 2016-10-05 9324 ENSG00000118418 OTTHUMG00000015073 uc003pit.4 L40357 NM_004242 "CCDS4988|CCDS4989|CCDS75485" Q15651 "7776974|11356838" MGI:2138069 RGD:1359106 HMGN3 604502 +HGNC:48984 HMGN3-AS1 HMGN3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q14.1 06q14.1 2013-07-24 2013-07-24 100288198 ENSG00000270362 OTTHUMG00000185118 NR_040671 +HGNC:39206 HMGN3P1 high mobility group nucleosomal binding domain 3 pseudogene 1 pseudogene pseudogene Approved 1q21.3 01q21.3 2010-11-23 2011-09-21 100289191 ENSG00000183586 OTTHUMG00000012385 NG_028929 12727900 PGOHUM00000245004 +HGNC:4989 HMGN4 high mobility group nucleosomal binding domain 4 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 NHC HMG17L3 high-mobility group (nonhistone chromosomal) protein 17-like 3 Canonical high mobility group 511 2000-03-06 2002-07-26 2002-07-25 2016-10-05 10473 ENSG00000182952 OTTHUMG00000014458 uc003nig.4 U90549 XM_017010171 CCDS4615 O00479 "9149941|11410162" RGD:2323648 HMGN4 +HGNC:8013 HMGN5 high mobility group nucleosome binding domain 5 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 NSBP1 "nucleosomal binding protein 1|high-mobility group nucleosome binding domain 5" Canonical high mobility group 511 2000-04-03 2009-09-15 2011-04-05 2016-10-05 79366 ENSG00000198157 OTTHUMG00000021911 uc004eee.1 AF250329 NM_030763 CCDS14448 P82970 "11161810|19748358" MGI:1355295 RGD:6497694 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NSBP1 HMGN5 300385 +HGNC:28982 HMGXB3 HMG-box containing 3 protein-coding gene gene with protein product Approved 5q32 05q32 "SMF|KIAA0194" HMGX3 HMG box domain containing 3 Non-canonical high mobility group 512 2008-11-20 2009-01-05 2016-01-26 2016-10-05 22993 ENSG00000113716 OTTHUMG00000163493 uc003lrk.5 D83778 XM_001717202 CCDS54935 Q12766 8724849 MGI:2441817 RGD:1560009 HMGXB3 +HGNC:5003 HMGXB4 HMG-box containing 4 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 THC211630 HMG2L1 "high-mobility group protein 2-like 1|HMG box domain containing 4" Non-canonical high mobility group 512 1999-01-07 2009-01-05 2016-01-26 2016-10-05 10042 ENSG00000100281 OTTHUMG00000150439 uc003anl.4 AJ010069 NM_005487 CCDS33641 Q9UGU5 "10329004|10591208|20511232" MGI:1918073 RGD:1305783 HMGXB4 604702 +HGNC:29677 HMHB1 histocompatibility minor HB-1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "HB-1|HB-1Y" Minor histocompatibility antigens 870 2006-07-20 2016-06-21 2016-06-21 57824 ENSG00000158497 OTTHUMG00000163173 uc003lnj.5 AF103884 NM_021182 CCDS43376 O97980 9892612 HMHB1 609961 +HGNC:5011 HMI entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-02-04 +HGNC:5012 HMMR hyaluronan mediated motility receptor protein-coding gene gene with protein product Approved 5q34 05q34 "RHAMM|CD168" "hyaluronan-mediated motility receptor (RHAMM)|hyaluronan-mediated motility receptor" CD molecules 471 1995-11-14 2016-01-20 2016-01-20 3161 ENSG00000072571 OTTHUMG00000130381 uc003lzh.5 U29343 NM_012484 "CCDS4362|CCDS4363|CCDS47334|CCDS47335" O75330 MGI:104667 RGD:2805 HMMR 600936 CD168 +HGNC:49149 HMMR-AS1 HMMR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q34 05q34 2014-03-26 2014-03-26 101927813 ENSG00000251018 OTTHUMG00000163557 BU852496 NR_109892 +HGNC:5013 HMOX1 heme oxygenase 1 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "bK286B10|HO-1" heme oxygenase (decycling) 1 1992-10-15 2015-03-20 2016-10-05 3162 ENSG00000100292 OTTHUMG00000150960 uc003ant.3 NM_002133 CCDS13914 P09601 10591208 MGI:96163 RGD:2806 HMOX1 141250 objectId:1441 1.14.99.3 +HGNC:5014 HMOX2 heme oxygenase 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 HO-2 heme oxygenase (decycling) 2 1992-10-15 2015-03-20 2015-08-25 3163 ENSG00000103415 OTTHUMG00000129473 uc010bts.5 XM_017023196 "CCDS10517|CCDS66931|CCDS73818" P30519 1575508 MGI:109373 RGD:67402 HMOX2 141251 objectId:1442 1.14.99.3 +HGNC:5016 HMS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-11-16 +HGNC:23037 HMSD histocompatibility minor serpin domain containing protein-coding gene gene with protein product Approved 18q22.1 18q22.1 "ACC-6|ACC6" C18orf53 histocompatibility (minor) serpin domain containing Minor histocompatibility antigens 870 2006-09-12 2016-04-06 2016-10-05 284293 ENSG00000221887 OTTHUMG00000060593 uc010dqj.4 AC009802 XM_209104 CCDS42441 "A8MTL9|P0C7T4" 17409267 HMSD 612086 +HGNC:5017 HMX1 H6 family homeobox 1 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "H6|NKX5-3" homeo box (H6 family) 1 NKL subclass homeoboxes and pseudogenes 519 1994-12-19 2007-07-09 2015-08-25 3166 ENSG00000215612 OTTHUMG00000160012 uc003izz.2 M99587 NM_018942 "CCDS47018|CCDS77900" Q9NP08 1360670 MGI:107178 RGD:1304928 HMX1 142992 8442 159708 +HGNC:5018 HMX2 H6 family homeobox 2 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 NKX5-2 homeo box (H6 family) 2 NKL subclass homeoboxes and pseudogenes 519 1994-12-19 2007-07-09 2014-11-18 3167 ENSG00000188816 OTTHUMG00000019198 uc001lhc.1 XM_370580 CCDS31305 A2RU54 7647458 MGI:107159 RGD:1565366 HMX2 600647 8443 +HGNC:5019 HMX3 H6 family homeobox 3 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 NKX5-1 homeo box (H6 family) 3 NKL subclass homeoboxes and pseudogenes 519 1995-01-20 2007-07-09 2014-11-18 340784 ENSG00000188620 OTTHUMG00000019199 uc010quc.3 XM_291716 CCDS41575 A6NHT5 MGI:107160 RGD:1559927 HMX3 613380 8377 +HGNC:14569 HN1 hematological and neurological expressed 1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "ARM2|HN1A" androgen-regulated protein 2 2001-02-08 2014-11-19 51155 ENSG00000189159 OTTHUMG00000154521 uc002jna.3 AF086910 NM_001002032 "CCDS32729|CCDS45771|CCDS45772" Q9UK76 15094197 MGI:1096361 RGD:1359325 HN1 +HGNC:14137 HN1L hematological and neurological expressed 1 like protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ13092|L11|KIAA1426" C16orf34 "chromosome 16 open reading frame 34|hematological and neurological expressed 1-like" 2000-12-21 2006-12-13 2016-07-18 2016-07-18 90861 ENSG00000206053 OTTHUMG00000047859 uc002cmg.4 AK023154 NM_144570 CCDS10441 Q9H910 15094197 MGI:1196260 RGD:1305117 HN1L +HGNC:5020 HNB1 hereditary neuroblastoma 1 phenotype phenotype only Approved 16p13-p12 16p13-p12 1999-07-14 2011-02-18 54111 12438263 +HGNC:11621 HNF1A HNF1 homeobox A protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "HNF1|LFB1" "MODY3|TCF1" transcription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor HNF class homeoboxes 524 1990-02-12 2007-08-24 2007-08-24 2016-10-12 6927 ENSG00000135100 OTTHUMG00000151015 uc001tzg.4 M57732 NM_000545 "CCDS9209|CCDS76611" P20823 "1535333|7795649" MGI:98504 RGD:3828 "Monogenic Diabetes|http://grenada.lumc.nl/LOVD2/diabetes/home.php?select_db=HNF1A|LRG_522|http://www.lrg-sequence.org/LRG/LRG_522" HNF1A 142410 8444 158583 +HGNC:26785 HNF1A-AS1 HNF1A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q24.31 12q24.31 FLJ38690 "C12orf27|NCRNA00262" "chromosome 12 open reading frame 27|non-protein coding RNA 262|HNF1A antisense RNA 1 (non-protein coding)" 2006-01-06 2011-04-28 2012-08-15 2015-04-15 283460 ENSG00000241388 OTTHUMG00000185474 uc058uek.1 AK096009 NR_024345 "24000294|25863539" +HGNC:11630 HNF1B HNF1 homeobox B protein-coding gene gene with protein product Approved 17q12 17q12 "LFB3|VHNF1|HNF1beta|MODY5" TCF2 transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor HNF class homeoboxes 524 1990-05-28 2007-08-24 2007-08-24 2015-09-07 6928 ENSG00000275410 OTTHUMG00000188478 uc002hok.5 BC017714 NM_000458 "CCDS11324|CCDS58538|CCDS77007" P35680 "1677179|10484768" MGI:98505 RGD:3830 HNF1B 189907 8445 158588 +HGNC:5024 HNF4A hepatocyte nuclear factor 4 alpha protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "NR2A1|HNF4" "TCF14|MODY|MODY1" Nuclear hormone receptors 71 1998-04-20 2016-01-18 2016-10-12 3172 ENSG00000101076 OTTHUMG00000032531 uc002xlt.4 X76930 XM_005260407 "CCDS13330|CCDS13331|CCDS42876|CCDS46604|CCDS46605|CCDS68131|CCDS74728" P41235 "7926813|9048927" MGI:109128 RGD:2810 "Monogenic Diabetes|http://grenada.lumc.nl/LOVD2/diabetes/home.php?select_db=HNF4A|LRG_483|http://www.lrg-sequence.org/LRG/LRG_483" HNF4A 600281 122455 objectId:608 +HGNC:49505 HNF4A-AS1 HNF4A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.12 20q13.12 uc002xlx 2014-01-02 2014-01-02 101927219 ENSG00000229005 OTTHUMG00000032525 AF143870 NR_109949 24344320 +HGNC:5026 HNF4G hepatocyte nuclear factor 4 gamma protein-coding gene gene with protein product Approved 8q21.13 08q21.13 NR2A2 Nuclear hormone receptors 71 1998-04-20 2016-01-18 2016-10-05 3174 ENSG00000164749 OTTHUMG00000149920 uc003yar.4 NM_004133 "CCDS6220|CCDS83303" Q14541 "8622695|12220494" MGI:1353604 RGD:1310102 HNF4G 605966 objectId:609 +HGNC:35417 HNF4GP1 hepatocyte nuclear factor 4 gamma pseudogene 1 pseudogene pseudogene Approved 13q21.1 13q21.1 2008-11-25 2016-01-18 2016-01-18 100130462 ENSG00000228611 OTTHUMG00000016986 NG_016594 18065488 PGOHUM00000248409 +HGNC:5028 HNMT histamine N-methyltransferase protein-coding gene gene with protein product Approved 2q22.1 02q22.1 1994-04-18 2015-08-25 3176 ENSG00000150540 OTTHUMG00000131751 uc002tvf.4 XM_017003948 "CCDS2181|CCDS33296|CCDS33297" P50135 MGI:2153181 RGD:71049 HNMT 605238 448453 2.1.1.8 +HGNC:5030 HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 hnRNPA0 HNRPA0 RNA binding motif containing 725 1999-09-28 2007-08-16 2016-10-05 10949 ENSG00000177733 OTTHUMG00000129156 uc003lbt.4 U23803 NM_006805 CCDS4193 Q13151 7585247 MGI:1924384 RGD:1563684 HNRNPA0 609409 +HGNC:5031 HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "hnRNPA1|hnRNP-A1|ALS20" HNRPA1 RNA binding motif containing 725 1991-05-21 2007-08-16 2016-10-06 3178 ENSG00000135486 OTTHUMG00000169702 uc001sfm.4 BC009600 NM_031157 "CCDS41793|CCDS44909" P09651 "1733858|23455423" MGI:104820 RGD:69234 HNRNPA1 164017 331931 +HGNC:27067 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 LOC144983 RNA binding motif containing 725 2009-01-09 2013-02-12 144983 ENSG00000139675 OTTHUMG00000016972 uc021rjy.3 NM_001011724 CCDS31980 Q32P51 12477932 MGI:3645633 HNRNPA1L2 +HGNC:13957 HNRNPA1P1 heterogeneous nuclear ribonucleoprotein A1 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "hnRNPA1-Lp|b34I8.2" HNRPA1P1 2003-11-26 2008-04-18 2016-10-05 645950 ENSG00000218347 OTTHUMG00000014479 NG_008821 PGOHUM00000243531 +HGNC:13958 HNRNPA1P2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 2 pseudogene pseudogene Approved 6p21.32 06p21.32 dJ372B18.1 HNRPA1P2 2003-11-26 2008-04-18 2014-11-19 100131609 ENSG00000237285 OTTHUMG00000031294 NG_008818 PGOHUM00000243588 +HGNC:16567 HNRNPA1P3 heterogeneous nuclear ribonucleoprotein A1 pseudogene 3 pseudogene pseudogene Approved 20q13.12 20q13.12 dJ447F3.1 HNRPA1P3 2001-09-17 2008-04-18 2011-01-05 170524 ENSG00000226188 OTTHUMG00000032613 AL050348 NG_001041 +HGNC:32234 HNRNPA1P4 heterogeneous nuclear ribonucleoprotein A1 pseudogene 4 pseudogene pseudogene Approved 8q21.13 08q21.13 HNRPA1P4 2005-09-02 2008-04-18 2014-11-19 389674 ENSG00000206228 OTTHUMG00000163344 NG_005789 PGOHUM00000250010 +HGNC:15787 HNRNPA1P5 heterogeneous nuclear ribonucleoprotein A1 pseudogene 5 pseudogene pseudogene Approved 15q23 15q23 2010-10-19 2012-10-16 100506712 ENSG00000259512 OTTHUMG00000172249 NG_028964 PGOHUM00000247151 +HGNC:5032 HNRNPA1P6 heterogeneous nuclear ribonucleoprotein A1 pseudogene 6 pseudogene pseudogene Approved 1p32.2 01p32.2 "HNRPA1L|HNRNPA1L|HNRNPA1L1" "heterogeneous nuclear ribonucleoprotein A1-like|heterogeneous nuclear ribonucleoprotein A1-like 1" 1991-05-21 2010-10-19 2010-10-19 2014-11-19 729423 ENSG00000229887 OTTHUMG00000010071 NG_009623 1733858 PGOHUM00000244044 +HGNC:31015 HNRNPA1P7 heterogeneous nuclear ribonucleoprotein A1 pseudogene 7 pseudogene pseudogene Approved 18q12.1 18q12.1 HNRPA1L3 heterogeneous nuclear ribonucleoprotein A1-like 3 2004-02-10 2010-10-19 2010-10-19 2010-10-19 388275 ENSG00000215492 OTTHUMG00000163726 NG_005529 +HGNC:39126 HNRNPA1P8 heterogeneous nuclear ribonucleoprotein A1 pseudogene 8 pseudogene pseudogene Approved 7q21.11 07q21.11 2010-10-19 2010-10-19 402562 ENSG00000229251 OTTHUMG00000154606 NG_006966 PGOHUM00000233459 +HGNC:39127 HNRNPA1P9 heterogeneous nuclear ribonucleoprotein A1 pseudogene 9 pseudogene pseudogene Approved 7q21.12 07q21.12 2010-10-19 2012-03-12 100421389 ENSG00000231956 OTTHUMG00000154450 NG_026603 PGOHUM00000233461 +HGNC:39128 HNRNPA1P10 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudogene pseudogene Approved 19p13.2 19p13.2 2010-10-19 2013-06-12 664709 ENSG00000214223 OTTHUMG00000156531 NR_002944 PGOHUM00000234158 +HGNC:39129 HNRNPA1P11 heterogeneous nuclear ribonucleoprotein A1 pseudogene 11 pseudogene pseudogene Approved 18q22.3 18q22.3 2010-10-19 2013-06-13 100128044 ENSG00000264315 OTTHUMG00000178796 NG_022497 PGOHUM00000235100 +HGNC:39130 HNRNPA1P12 heterogeneous nuclear ribonucleoprotein A1 pseudogene 12 pseudogene pseudogene Approved 5q14.1 05q14.1 2010-10-19 2013-06-13 644037 ENSG00000220157 OTTHUMG00000162536 NG_021856 PGOHUM00000235293 +HGNC:39131 HNRNPA1P13 heterogeneous nuclear ribonucleoprotein A1 pseudogene 13 pseudogene pseudogene Approved 5q31.1 05q31.1 2010-10-19 2013-06-13 100131130 ENSG00000213568 OTTHUMG00000163217 NG_021898 PGOHUM00000235766 +HGNC:39132 HNRNPA1P14 heterogeneous nuclear ribonucleoprotein A1 pseudogene 14 pseudogene pseudogene Approved 9q22.1 09q22.1 2010-10-19 2012-03-12 100421351 ENSG00000227638 OTTHUMG00000020169 NG_023844 PGOHUM00000236250 +HGNC:39133 HNRNPA1P15 heterogeneous nuclear ribonucleoprotein A1 pseudogene 15 pseudogene pseudogene Approved 9q33.3 09q33.3 2010-10-19 2012-03-12 100421353 ENSG00000214761 OTTHUMG00000020680 NG_023957 PGOHUM00000236772 +HGNC:39134 HNRNPA1P16 heterogeneous nuclear ribonucleoprotein A1 pseudogene 16 pseudogene pseudogene Approved 17p13.3 17p13.3 2010-10-19 2012-10-16 440396 ENSG00000262333 OTTHUMG00000177701 NG_009621 HNRNPA1P16 PGOHUM00000262359 +HGNC:39135 HNRNPA1P17 heterogeneous nuclear ribonucleoprotein A1 pseudogene 17 pseudogene pseudogene Approved 3q13.13 03q13.13 2010-10-19 2013-06-13 100421376 ENSG00000243188 OTTHUMG00000159225 NG_025606 PGOHUM00000237711 +HGNC:39445 HNRNPA1P18 heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 pseudogene pseudogene Approved 13q21.33 13q21.33 2011-01-12 2011-01-12 2014-02-12 100874400 ENSG00000229910 OTTHUMG00000017045 NG_032303 PGOHUM00000261152 +HGNC:39537 HNRNPA1P19 heterogeneous nuclear ribonucleoprotein A1 pseudogene 19 pseudogene pseudogene Approved 17p11.2 17p11.2 2011-02-21 2014-11-19 100874402 ENSG00000218454 OTTHUMG00000059554 NG_032318 PGOHUM00000236975 +HGNC:39538 HNRNPA1P20 heterogeneous nuclear ribonucleoprotein A1 pseudogene 20 pseudogene pseudogene Approved 3q24 03q24 2011-02-21 2014-11-19 344741 ENSG00000205412 OTTHUMG00000159499 NG_022223 PGOHUM00000237807 +HGNC:39539 HNRNPA1P21 heterogeneous nuclear ribonucleoprotein A1 pseudogene 21 pseudogene pseudogene Approved 3p22.1 03p22.1 2011-02-21 2016-10-05 344697 ENSG00000228168 OTTHUMG00000156248 NG_002728 PGOHUM00000238000 +HGNC:39540 HNRNPA1P22 heterogeneous nuclear ribonucleoprotein A1 pseudogene 22 pseudogene pseudogene Approved 3p22.1 03p22.1 2011-02-21 2014-11-19 729102 ENSG00000236459 OTTHUMG00000156284 NG_022249 PGOHUM00000238011 +HGNC:39541 HNRNPA1P23 heterogeneous nuclear ribonucleoprotein A1 pseudogene 23 pseudogene pseudogene Approved 3q21.1 03q21.1 2011-02-21 2014-11-19 100130002 ENSG00000240236 OTTHUMG00000159493 NG_022268 PGOHUM00000238153 +HGNC:39542 HNRNPA1P24 heterogeneous nuclear ribonucleoprotein A1 pseudogene 24 pseudogene pseudogene Approved 3q25.1 03q25.1 2011-02-21 2014-11-18 100874396 ENSG00000241947 OTTHUMG00000159736 NG_032319 PGOHUM00000238228 +HGNC:39543 HNRNPA1P25 heterogeneous nuclear ribonucleoprotein A1 pseudogene 25 pseudogene pseudogene Approved Xq13.2 Xq13.2 2011-02-21 2014-11-19 100131983 ENSG00000231206 OTTHUMG00000021856 NG_011641 PGOHUM00000241399 +HGNC:39544 HNRNPA1P26 heterogeneous nuclear ribonucleoprotein A1 pseudogene 26 pseudogene pseudogene Approved Xq22.1 Xq22.1 2011-02-21 2014-11-19 664722 ENSG00000239345 OTTHUMG00000022008 NG_005517 PGOHUM00000241465 +HGNC:39545 HNRNPA1P27 heterogeneous nuclear ribonucleoprotein A1 pseudogene 27 pseudogene pseudogene Approved Xq22.1 Xq22.1 2011-02-21 2014-11-19 664721 ENSG00000233680 OTTHUMG00000022009 NG_005516 PGOHUM00000241466 +HGNC:39546 HNRNPA1P28 heterogeneous nuclear ribonucleoprotein A1 pseudogene 28 pseudogene pseudogene Approved Xq24 Xq24 2011-02-21 2014-11-19 100288038 ENSG00000230170 OTTHUMG00000022266 NG_022695 PGOHUM00000241971 +HGNC:39547 HNRNPA1P29 heterogeneous nuclear ribonucleoprotein A1 pseudogene 29 pseudogene pseudogene Approved 13q31.3 13q31.3 2011-02-21 2014-11-19 100421424 ENSG00000235784 OTTHUMG00000017202 NG_024875 PGOHUM00000248463 +HGNC:39548 HNRNPA1P30 heterogeneous nuclear ribonucleoprotein A1 pseudogene 30 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-02-21 2014-11-19 440125 ENSG00000233780 OTTHUMG00000016523 NG_011345 PGOHUM00000261150 +HGNC:39549 HNRNPA1P31 heterogeneous nuclear ribonucleoprotein A1 pseudogene 31 pseudogene pseudogene Approved 13q31.1 13q31.1 2011-02-21 2014-11-19 100506925 ENSG00000227862 OTTHUMG00000017141 NG_028977 PGOHUM00000248446 +HGNC:44958 HNRNPA1P32 heterogeneous nuclear ribonucleoprotein A1 pseudogene 32 pseudogene pseudogene Approved 10p11.23 10p11.23 2012-12-20 2012-12-20 645940 ENSG00000213778 OTTHUMG00000017893 NG_030272 PGOHUM00000261082 +HGNC:44990 HNRNPA1P33 heterogeneous nuclear ribonucleoprotein A1 pseudogene 33 pseudogene pseudogene Approved 10q11.22 10q11.22 2013-01-04 2013-01-04 728643 ENSG00000213412 OTTHUMG00000018110 NR_003277 PGOHUM00000261085 +HGNC:48763 HNRNPA1P34 heterogeneous nuclear ribonucleoprotein A1 pseudogene 34 pseudogene pseudogene Approved 12p13.31 12p13.31 2013-06-13 2013-06-13 100996501 ENSG00000213049 OTTHUMG00000168286 PGOHUM00000256690 +HGNC:48764 HNRNPA1P35 heterogeneous nuclear ribonucleoprotein A1 pseudogene 35 pseudogene pseudogene Approved 2q33.1 02q33.1 2013-06-13 2013-06-13 645691 ENSG00000225695 OTTHUMG00000154714 NG_021599 PGOHUM00000241062 +HGNC:48765 HNRNPA1P36 heterogeneous nuclear ribonucleoprotein A1 pseudogene 36 pseudogene pseudogene Approved 8q21.13 08q21.13 2013-06-13 2013-06-13 100128836 ENSG00000231942 OTTHUMG00000164728 NG_030276 PGOHUM00000257212 +HGNC:48766 HNRNPA1P37 heterogeneous nuclear ribonucleoprotein A1 pseudogene 37 pseudogene pseudogene Approved 6p25.1 06p25.1 2013-06-13 2013-06-13 100421379 ENSG00000218574 OTTHUMG00000014177 NG_025781 PGOHUM00000261419 +HGNC:48767 HNRNPA1P38 heterogeneous nuclear ribonucleoprotein A1pseudogene 38 pseudogene pseudogene Approved 8q24.3 08q24.3 2013-06-13 2013-06-13 100421384 ENSG00000253605 OTTHUMG00000164496 NG_026136 PGOHUM00000249809 +HGNC:48768 HNRNPA1P39 heterogeneous nuclear ribonucleoprotein A1 pseudogene 39 pseudogene pseudogene Approved 2q31.1 02q31.1 2013-06-13 2013-06-13 402112 ENSG00000237804 OTTHUMG00000154151 NG_021539 PGOHUM00000240435 +HGNC:48769 HNRNPA1P40 heterogeneous nuclear ribonucleoprotein A1 pseudogene 40 pseudogene pseudogene Approved 11q13.4 11q13.4 2013-06-13 2013-06-13 100129920 ENSG00000212961 OTTHUMG00000168133 NG_021823 PGOHUM00000242802 +HGNC:48770 HNRNPA1P41 heterogeneous nuclear ribonucleoprotein A1 pseudogene 41 pseudogene pseudogene Approved 9p24.1 09p24.1 2013-06-13 2013-06-13 100128701 ENSG00000220937 OTTHUMG00000019475 NG_009758 PGOHUM00000264403 +HGNC:48771 HNRNPA1P42 heterogeneous nuclear ribonucleoprotein A1 pseudogene 42 pseudogene pseudogene Approved 1q43 01q43 2013-06-13 2013-06-13 100287266 ENSG00000233615 OTTHUMG00000040728 NG_022832 PGOHUM00000245274 +HGNC:48772 HNRNPA1P43 heterogeneous nuclear ribonucleoprotein A1 pseudogene 43 pseudogene pseudogene Approved 1p13.1 01p13.1 2013-06-13 2013-06-13 400769 ENSG00000214204 OTTHUMG00000011968 NG_022734 PGOHUM00000244154 +HGNC:48774 HNRNPA1P44 heterogeneous nuclear ribonucleoprotein A1 pseudogene 44 pseudogene pseudogene Approved 15q22.31 15q22.31 2013-06-13 2013-06-13 100421432 ENSG00000249271 OTTHUMG00000172813 NG_025327 PGOHUM00000261171 +HGNC:48775 HNRNPA1P45 heterogeneous nuclear ribonucleoprotein A1 pseudogene 45 pseudogene pseudogene Approved 15q14 15q14 2013-06-13 2013-06-13 100130660 ENSG00000259411 OTTHUMG00000172346 NG_022125 PGOHUM00000247090 +HGNC:48776 HNRNPA1P46 heterogeneous nuclear ribonucleoprotein A1 pseudogene 46 pseudogene pseudogene Approved 1q31.2 01q31.2 2013-06-13 2013-06-13 100421399 ENSG00000228020 OTTHUMG00000035529 NG_027029 PGOHUM00000244378 +HGNC:48777 HNRNPA1P47 heterogeneous nuclear ribonucleoprotein A1 pseudogene 47 pseudogene pseudogene Approved 2q32.3 02q32.3 2013-06-13 2013-06-13 100287191 ENSG00000236695 OTTHUMG00000154355 NG_021596 PGOHUM00000241051 +HGNC:48778 HNRNPA1P48 heterogeneous nuclear ribonucleoprotein A1 pseudogene 48 pseudogene pseudogene Approved 16q12.1 16q12.1 2013-06-13 2013-06-13 642659 ENSG00000224578 OTTHUMG00000173250 NG_005530 +HGNC:48779 HNRNPA1P49 heterogeneous nuclear ribonucleoprotein A1 pseudogene 49 pseudogene pseudogene Approved 6q27 06q27 2013-06-13 2013-06-13 106481663 ENSG00000233231 OTTHUMG00000015995 NG_044936 PGOHUM00000260193 +HGNC:48780 HNRNPA1P50 heterogeneous nuclear ribonucleoprotein A1 pseudogene 50 pseudogene pseudogene Approved 12q22 12q22 2013-06-13 2013-06-13 728170 ENSG00000257195 OTTHUMG00000170108 NG_021730 PGOHUM00000239891 +HGNC:48781 HNRNPA1P51 heterogeneous nuclear ribonucleoprotein A1 pseudogene 51 pseudogene pseudogene Approved 2q33.3 02q33.3 2013-06-13 2013-06-13 729366 ENSG00000234491 OTTHUMG00000154646 NG_021550 PGOHUM00000240502 +HGNC:48782 HNRNPA1P52 heterogeneous nuclear ribonucleoprotein A1 pseudogene 52 pseudogene pseudogene Approved 19q13.2 19q13.2 2013-06-13 2013-06-13 645001 ENSG00000269119 OTTHUMG00000182661 NG_030273 PGOHUM00000234709 +HGNC:48783 HNRNPA1P53 heterogeneous nuclear ribonucleoprotein A1 pseudogene 53 pseudogene pseudogene Approved 11p15.4 11p15.4 2013-06-13 2013-06-13 728732 ENSG00000229534 OTTHUMG00000066898 NG_021771 PGOHUM00000242151 +HGNC:48784 HNRNPA1P54 heterogeneous nuclear ribonucleoprotein A1 pseudogene 54 pseudogene pseudogene Approved 1q25.2 01q25.2 2013-06-13 2013-06-13 100421398 ENSG00000236539 OTTHUMG00000035268 NG_027023 PGOHUM00000244357 +HGNC:48785 HNRNPA1P55 heterogeneous nuclear ribonucleoprotein A1 pseudogene 55 pseudogene pseudogene Approved 4q13.3 04q13.3 2013-06-13 2013-06-13 642958 ENSG00000249920 OTTHUMG00000160860 NG_022013 PGOHUM00000245589 +HGNC:48786 HNRNPA1P56 heterogeneous nuclear ribonucleoprotein A1 pseudogene 56 pseudogene pseudogene Approved 4q21.1 04q21.1 2013-06-13 2016-10-05 391670 ENSG00000248640 OTTHUMG00000160850 NG_022016 PGOHUM00000245604 +HGNC:48787 HNRNPA1P57 heterogeneous nuclear ribonucleoprotein A1 pseudogene 57 pseudogene pseudogene Approved 2p22.1 02p22.1 2013-06-13 2013-09-20 101060039 ENSG00000237442 OTTHUMG00000152297 PGOHUM00000261352 +HGNC:48788 HNRNPA1P58 heterogeneous nuclear ribonucleoprotein A1 pseudogene 58 pseudogene pseudogene Approved 6p22.3 06p22.3 2013-06-13 2013-06-13 100289286 ENSG00000219582 OTTHUMG00000014353 NG_022348 PGOHUM00000261427 +HGNC:48789 HNRNPA1P59 heterogeneous nuclear ribonucleoprotein A1 pseudogene 59 pseudogene pseudogene Approved 1q32.1 01q32.1 2013-06-13 2013-06-13 730246 ENSG00000230280 OTTHUMG00000041398 NG_022824 PGOHUM00000245164 +HGNC:48790 HNRNPA1P60 heterogeneous nuclear ribonucleoprotein A1 pseudogene 60 pseudogene pseudogene Approved 11q23.1 11q23.1 2013-06-13 2013-06-13 120364 ENSG00000233497 OTTHUMG00000166646 NG_021803 PGOHUM00000242478 +HGNC:48791 HNRNPA1P61 heterogeneous nuclear ribonucleoprotein A1 pseudogene 61 pseudogene pseudogene Approved 2p22.3 02p22.3 2013-06-13 2013-06-13 100288283 ENSG00000187999 OTTHUMG00000152163 NG_021559 PGOHUM00000240618 +HGNC:48792 HNRNPA1P62 heterogeneous nuclear ribonucleoprotein A1 pseudogene 62 pseudogene pseudogene Approved 15q26.3 15q26.3 2013-06-13 2013-06-13 106480235 ENSG00000259228 OTTHUMG00000171905 NG_043767 PGOHUM00000246937 +HGNC:48793 HNRNPA1P63 heterogeneous nuclear ribonucleoprotein A1 pseudogene 63 pseudogene pseudogene Approved 1p32.3 01p32.3 2013-06-13 2013-06-13 645436 ENSG00000227453 OTTHUMG00000008361 NG_022780 PGOHUM00000244730 +HGNC:48794 HNRNPA1P64 heterogeneous nuclear ribonucleoprotein A1 pseudogene 64 pseudogene pseudogene Approved 1p31.1 01p31.1 2013-06-13 2013-06-13 100129325 ENSG00000213559 OTTHUMG00000000524 NG_032722 PGOHUM00000244080 +HGNC:48795 HNRNPA1P65 heterogeneous nuclear ribonucleoprotein A1 pseudogene 65 pseudogene pseudogene Approved 4p15.2 04p15.2 2013-06-13 2013-06-13 106481664 ENSG00000248444 OTTHUMG00000160307 NG_042906 PGOHUM00000261385 +HGNC:48796 HNRNPA1P66 heterogeneous nuclear ribonucleoprotein A1 pseudogene 66 pseudogene pseudogene Approved 2p15 02p15 2013-06-13 2013-06-13 391378 ENSG00000229221 OTTHUMG00000152609 NG_021502 PGOHUM00000240070 +HGNC:48797 HNRNPA1P67 heterogeneous nuclear ribonucleoprotein A1 pseudogene 67 pseudogene pseudogene Approved 4q13.3 04q13.3 2013-06-13 2013-06-13 728019 ENSG00000270665 OTTHUMG00000160810 NG_022062 PGOHUM00000245961 +HGNC:48798 HNRNPA1P68 heterogeneous nuclear ribonucleoprotein A1 pseudogene 68 pseudogene pseudogene Approved 1p21.2 01p21.2 2013-06-13 2013-06-13 100421397 ENSG00000230946 OTTHUMG00000057599 NG_026964 PGOHUM00000244122 +HGNC:48799 HNRNPA1P69 heterogeneous nuclear ribonucleoprotein A1 pseudogene 69 pseudogene pseudogene Approved 12q14.2 12q14.2 2013-06-13 2013-06-13 105369973 ENSG00000257332 OTTHUMG00000169982 NG_046385 PGOHUM00000261145 +HGNC:48800 HNRNPA1P70 heterogeneous nuclear ribonucleoprotein A1 pseudogene 70 pseudogene pseudogene Approved 12q15 12q15 2013-06-13 2013-06-13 341333 ENSG00000236946 OTTHUMG00000169109 NG_021724 PGOHUM00000239839 +HGNC:48801 HNRNPA1P71 heterogeneous nuclear ribonucleoprotein A1 pseudogene 71 pseudogene pseudogene Approved 15q13.3 15q13.3 2013-06-13 2013-06-13 100421433 ENSG00000259686 OTTHUMG00000172233 NG_025372 PGOHUM00000247077 +HGNC:48802 HNRNPA1P72 heterogeneous nuclear ribonucleoprotein A1 pseudogene 72 pseudogene pseudogene Approved 11q14.1 11q14.1 2013-06-13 2014-02-12 106480236 ENSG00000254713 OTTHUMG00000167148 NG_045574 PGOHUM00000261115 +HGNC:48803 HNRNPA1P73 heterogeneous nuclear ribonucleoprotein A1 pseudogene 73 pseudogene pseudogene Approved 7p15.2 07p15.2 2013-06-13 2013-06-13 100129606 ENSG00000236569 OTTHUMG00000033395 PGOHUM00000261443 +HGNC:48804 HNRNPA1P74 heterogeneous nuclear ribonucleoprotein A1 pseudogene 74 pseudogene pseudogene Approved 15q21.3 15q21.3 2013-06-13 2013-06-13 100421430 ENSG00000259550 OTTHUMG00000172593 NG_025316 PGOHUM00000246790 +HGNC:48805 HNRNPA1P75 heterogeneous nuclear ribonucleoprotein A1 pseudogene 75 pseudogene pseudogene Approved 7q11.21 07q11.21 2013-06-13 2013-06-13 PGOHUM00000261495 +HGNC:48806 HNRNPA1P76 heterogeneous nuclear ribonucleoprotein A1 pseudogene 76 pseudogene pseudogene Approved 11p15.4 11p15.4 2013-06-13 2013-06-13 106480675 ENSG00000255141 OTTHUMG00000165494 NG_043196 PGOHUM00000261104 +HGNC:48807 HNRNPA1P77 heterogeneous nuclear ribonucleoprotein A1 pseudogene 77 pseudogene pseudogene Approved 3p21.31 03p21.31 2013-06-13 2013-06-13 100421378 NG_025692 PGOHUM00000238015 +HGNC:5033 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 HNRPA2B1 RNA binding motif containing 725 1994-08-29 2007-08-16 2016-10-05 3181 ENSG00000122566 OTTHUMG00000023471 uc003sxs.5 D28877 NM_002137 "CCDS5397|CCDS43557" P22626 8029005 MGI:104819 RGD:1310403 HNRNPA2B1 600124 331927 +HGNC:24941 HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 HNRPA3 RNA binding motif containing 725 2004-08-04 2008-04-18 2015-09-11 220988 ENSG00000170144 OTTHUMG00000132529 uc031rqb.2 AF517524 NM_194247 "CCDS2273|CCDS82536" P51991 "11886857|15776420" MGI:1917171 RGD:727807 HNRNPA3 605372 +HGNC:13729 HNRNPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudogene pseudogene Approved 10q11.21 10q11.21 "FBRNP|D10S102" "HNRPA3|HNRPA3P1" heterogeneous nuclear ribonucleoprotein A3 2000-12-04 2008-04-18 2004-08-04 2013-05-15 10151 ENSG00000226790 OTTHUMG00000039983 S63912 NR_002726 8101480 PGOHUM00000258471 +HGNC:16605 HNRNPA3P2 heterogeneous nuclear ribonucleoprotein A3 pseudogene 2 pseudogene pseudogene Approved 20q11.23 20q11.23 dJ977B1.2 "HNRPA3P|HNRPA3P2" heterogeneous nuclear ribonucleoprotein A3 pseudogene 2001-09-17 2008-04-18 2004-08-04 2011-03-29 170526 ENSG00000227688 OTTHUMG00000032385 AL031662 NG_001042 +HGNC:39772 HNRNPA3P3 heterogeneous nuclear ribonucleoprotein A3 pseudogene 3 pseudogene pseudogene Approved Xq27.1 Xq27.1 2011-03-29 2014-11-19 643689 ENSG00000214653 OTTHUMG00000022541 NG_005582 PGOHUM00000260991 +HGNC:39773 HNRNPA3P4 heterogeneous nuclear ribonucleoprotein A3 pseudogene 4 pseudogene pseudogene Approved 6p12.3 06p12.3 2011-03-29 2014-11-19 389395 ENSG00000226068 OTTHUMG00000014806 NG_005583 PGOHUM00000260125 +HGNC:39774 HNRNPA3P5 heterogeneous nuclear ribonucleoprotein A3 pseudogene 5 pseudogene pseudogene Approved 13q21.32 13q21.32 2011-03-29 2014-11-19 387933 ENSG00000236565 OTTHUMG00000017031 NG_005585 PGOHUM00000258709 +HGNC:48495 HNRNPA3P6 heterogeneous nuclear ribonucleoprotein A3 pseudogene 6 pseudogene pseudogene Approved 3p12.3 03p12.3 2013-05-15 2013-05-15 653115 ENSG00000213300 OTTHUMG00000158819 NG_005586 PGOHUM00000259857 +HGNC:48496 HNRNPA3P7 heterogeneous nuclear ribonucleoprotein A3 pseudogene 7 pseudogene pseudogene Approved 5q33.2 05q33.2 2013-05-15 2013-05-15 100421357 ENSG00000253119 OTTHUMG00000163603 NG_024635 PGOHUM00000235430 +HGNC:48497 HNRNPA3P8 heterogeneous nuclear ribonucleoprotein A3 pseudogene 8 pseudogene pseudogene Approved 3p12.2 03p12.2 2013-05-15 2013-05-15 100129557 ENSG00000239699 OTTHUMG00000158931 NG_029271 PGOHUM00000238084 +HGNC:48755 HNRNPA3P9 heterogeneous nuclear ribonucleoprotein A3 pseudogene 9 pseudogene pseudogene Approved 11p13 11p13 2013-06-13 2013-06-13 100421415 ENSG00000270903 OTTHUMG00000184829 NG_024325 PGOHUM00000258563 +HGNC:48756 HNRNPA3P10 heterogeneous nuclear ribonucleoprotein A3 pseudogene 10 pseudogene pseudogene Approved 12q13.13 12q13.13 2013-06-13 2013-06-13 100421413 ENSG00000257851 OTTHUMG00000169491 NG_024011 PGOHUM00000258626 +HGNC:48757 HNRNPA3P11 heterogeneous nuclear ribonucleoprotein A3 pseudogene 11 pseudogene pseudogene Approved 15q21.3 15q21.3 2013-06-13 2013-06-13 100421431 ENSG00000260689 OTTHUMG00000172640 NG_025320 PGOHUM00000258860 +HGNC:48758 HNRNPA3P12 heterogeneous nuclear ribonucleoprotein A3 pseudogene 12 pseudogene pseudogene Approved 1p32.3 01p32.3 2013-06-13 2013-06-13 100421395 ENSG00000219102 OTTHUMG00000008438 NG_026941 PGOHUM00000259464 +HGNC:48759 HNRNPA3P13 heterogeneous nuclear ribonucleoprotein A3 pseudogene 13 pseudogene pseudogene Approved 4q21.22 04q21.22 2013-06-13 2013-06-13 441026 ENSG00000250826 OTTHUMG00000160947 NG_005584 PGOHUM00000259943 +HGNC:48760 HNRNPA3P14 heterogeneous nuclear ribonucleoprotein A3 pseudogene 14 pseudogene pseudogene Approved 1p31.1 01p31.1 2013-06-13 2013-06-13 729817 ENSG00000224494 OTTHUMG00000009838 NG_022787 PGOHUM00000264167 +HGNC:48761 HNRNPA3P15 heterogeneous nuclear ribonucleoprotein A3 pseudogene 15 pseudogene pseudogene Approved 2q33.1 02q33.1 2013-06-13 2013-06-13 106480234 ENSG00000225636 OTTHUMG00000154408 NG_045093 PGOHUM00000264285 +HGNC:48762 HNRNPA3P16 heterogeneous nuclear ribonucleoprotein A3 pseudogene 16 pseudogene pseudogene Approved 18q21.2 18q21.2 2013-06-13 2013-06-13 100421451 ENSG00000267233 OTTHUMG00000180040 NG_026331 PGOHUM00000259282 +HGNC:5034 HNRNPAB heterogeneous nuclear ribonucleoprotein A/B protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "ABBP1|FLJ40338" HNRPAB RNA binding motif containing 725 1994-08-29 2008-04-18 2014-11-19 3182 ENSG00000197451 OTTHUMG00000163452 uc003miu.4 "AK097657|BC036708" NM_004499 "CCDS34309|CCDS34310" Q99729 1717314 MGI:1330294 RGD:69255 HNRNPAB 602688 +HGNC:48744 HNRNPABP1 heterogeneous nuclear ribonucleoprotein A/B pseudogene 1 pseudogene pseudogene Approved 12p13.2 12p13.2 2013-06-12 2013-06-12 390294 ENSG00000255734 OTTHUMG00000168406 NG_021704 PGOHUM00000239668 +HGNC:5035 HNRNPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 hnRNPC HNRPC RNA binding motif containing 725 1997-08-28 2007-08-16 2014-11-19 3183 ENSG00000092199 OTTHUMG00000170757 uc058zad.1 XM_011536710 "CCDS41915|CCDS45079" P07910 3457372 MGI:107795 RGD:1309982 HNRNPC 164020 +HGNC:29295 HNRNPCL1 heterogeneous nuclear ribonucleoprotein C-like 1 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 HNRPCL1 RNA binding motif containing 725 2005-05-13 2008-04-18 2014-11-19 343069 ENSG00000179172 OTTHUMG00000001931 uc057cki.1 BC002696 NM_001013631 CCDS30591 O60812 RGD:6491888 HNRNPCL1 +HGNC:48813 HNRNPCL2 heterogeneous nuclear ribonucleoprotein C-like 2 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 HNRNPCP5 heterogeneous nuclear ribonucleoprotein C pseudogene 5 2013-06-13 2014-05-27 2014-05-27 2014-10-07 440563 ENSG00000275774 OTTHUMG00000009503 NM_001136561 CCDS76105 B2RXH8 +HGNC:51235 HNRNPCL3 heterogeneous nuclear ribonucleoprotein C-like 3 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 2014-10-08 2014-10-08 649330 ENSG00000277058 OTTHUMG00000189236 NM_001146181 CCDS72705 B7ZW38 +HGNC:51333 HNRNPCL4 heterogeneous nuclear ribonucleoprotein C-like 4 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 2014-10-08 2014-10-08 101060301 ENSG00000179412 OTTHUMG00000189238 NM_001302551 CCDS76107 P0DMR1 +HGNC:20017 HNRNPCP1 heterogeneous nuclear ribonucleoprotein C pseudogene 1 pseudogene pseudogene Approved 14q23.1 14q23.1 HNRPCP heterogeneous nuclear ribonucleoprotein C pseudogene 2003-01-13 2013-06-12 2013-06-12 2014-11-19 319133 ENSG00000258900 OTTHUMG00000171161 NG_002511 PGOHUM00000261852 +HGNC:48814 HNRNPCP2 heterogeneous nuclear ribonucleoprotein C pseudogene 2 pseudogene pseudogene Approved 2q32.2 02q32.2 2013-06-13 2014-02-12 653447 ENSG00000204253 OTTHUMG00000154452 NG_006653 PGOHUM00000241046 +HGNC:48815 HNRNPCP3 heterogeneous nuclear ribonucleoprotein C pseudogene 3 pseudogene pseudogene Approved 15q25.1 15q25.1 2013-06-13 2013-06-13 646956 ENSG00000259419 OTTHUMG00000172070 NG_022134 PGOHUM00000261871 +HGNC:48816 HNRNPCP4 heterogeneous nuclear ribonucleoprotein C pseudogene 4 pseudogene pseudogene Approved 16p13.13 16p13.13 2013-06-13 2013-06-13 100421828 ENSG00000263179 OTTHUMG00000177408 NG_026395 PGOHUM00000248983 +HGNC:48817 HNRNPCP6 heterogeneous nuclear ribonucleoprotein C pseudogene 6 pseudogene pseudogene Approved 11q14.1 11q14.1 2013-06-13 2013-06-13 100421794 ENSG00000213305 OTTHUMG00000167152 NG_024391 PGOHUM00000261834 +HGNC:48818 HNRNPCP7 heterogeneous nuclear ribonucleoprotein C pseudogene 7 pseudogene pseudogene Approved 7q11.21 07q11.21 2013-06-13 2013-06-13 100127907 ENSG00000228653 OTTHUMG00000156253 NG_012728 PGOHUM00000261937 +HGNC:48819 HNRNPCP8 heterogeneous nuclear ribonucleoprotein C pseudogene 8 pseudogene pseudogene Approved 11q14.2 11q14.2 2013-06-13 2013-06-13 100131842 ENSG00000254748 OTTHUMG00000167234 NG_021828 PGOHUM00000261837 +HGNC:48820 HNRNPCP9 heterogeneous nuclear ribonucleoprotein C pseudogene 9 pseudogene pseudogene Approved 1p31.3 01p31.3 2013-06-13 2013-06-13 100130196 ENSG00000232048 OTTHUMG00000009543 PGOHUM00000261891 +HGNC:48821 HNRNPCP10 heterogeneous nuclear ribonucleoprotein C pseudogene 10 pseudogene pseudogene Approved Xq27.3 Xq27.3 2013-06-13 2013-06-13 100129229 ENSG00000215054 OTTHUMG00000022590 NG_030279 PGOHUM00000261948 +HGNC:5036 HNRNPD heterogeneous nuclear ribonucleoprotein D protein-coding gene gene with protein product Approved 4q21.22 04q21.22 "AUF1|HNRPD" "heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD)|AU-rich element RNA binding protein 1, 37kDa" RNA binding motif containing 725 1997-10-30 2008-04-18 2015-11-09 2016-10-05 3184 ENSG00000138668 OTTHUMG00000130290 uc003hmm.2 AF026126 NM_031370 "CCDS3590|CCDS3591|CCDS3592" Q14103 9615222 MGI:101947 RGD:620365 HNRNPD 601324 +HGNC:5037 HNRNPDL heterogeneous nuclear ribonucleoprotein D like protein-coding gene gene with protein product Approved 4q21.22 04q21.22 "JKTBP|laAUF1" HNRPDL RNA binding motif containing 725 1998-09-25 2013-06-12 2015-11-09 2015-11-09 9987 ENSG00000152795 OTTHUMG00000130299 D89092 NM_005463 "CCDS3593|CCDS75153" O14979 "10072754|9524220" MGI:1355299 RGD:1309950 607137 410515 +HGNC:48752 HNRNPDLP1 heterogeneous nuclear ribonucleoprotein D-like pseudogene 1 pseudogene pseudogene Approved Xq21.33 Xq21.33 2013-06-13 2013-06-13 100128595 ENSG00000226307 OTTHUMG00000021982 NG_022680 PGOHUM00000241897 +HGNC:48753 HNRNPDLP2 heterogeneous nuclear ribonucleoprotein D-like pseudogene 2 pseudogene pseudogene Approved 2q24.1 02q24.1 2013-06-13 2013-06-13 100128061 ENSG00000234890 OTTHUMG00000153974 NG_021589 PGOHUM00000240995 +HGNC:48754 HNRNPDLP3 heterogeneous nuclear ribonucleoprotein D-like pseudogene 3 pseudogene pseudogene Approved Xq21.33 Xq21.33 2013-06-13 2013-06-13 106481662 ENSG00000236185 OTTHUMG00000154905 NG_044926 PGOHUM00000241896 +HGNC:48808 HNRNPDLP4 heterogeneous nuclear ribonucleoprotein D-like pseudogene 4 pseudogene pseudogene Approved 19q13.43 19q13.43 2013-06-13 2013-06-13 100421657 ENSG00000270837 OTTHUMG00000184915 NG_024209 PGOHUM00000234454 +HGNC:48809 HNRNPDLP5 heterogeneous nuclear ribonucleoprotein D-like pseudogene 5 pseudogene pseudogene Approved Xp22.2 Xp22.2 2013-06-13 2013-06-13 PGOHUM00000241649 +HGNC:5038 HNRNPDP1 heterogeneous nuclear ribonucleoprotein D pseudogene 1 pseudogene pseudogene Approved Xq11.2 Xq11.2 "AUF1B|AUF1P" "HNRPDP|HNRNPDP" "heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA-binding protein 1, 37kD) pseudogene|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) pseudogene|heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) pseudogene 1" 1999-02-04 2013-06-12 2015-11-10 2015-11-10 8251 ENSG00000232794 OTTHUMG00000021702 NG_000874 8661052 PGOHUM00000241809 +HGNC:48749 HNRNPDP2 heterogeneous nuclear ribonucleoprotein D pseudogene 2 pseudogene pseudogene Approved 6q12 06q12 heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) pseudogene 2 2013-06-13 2015-11-10 2015-11-10 106481661 ENSG00000217811 OTTHUMG00000014959 NG_046039 PGOHUM00000243232 +HGNC:5039 HNRNPF heterogeneous nuclear ribonucleoprotein F protein-coding gene gene with protein product Approved 10q11.21 10q11.21 HNRPF RNA binding motif containing 725 1997-08-28 2008-04-18 2015-09-08 3185 ENSG00000169813 OTTHUMG00000018029 uc001jat.3 NM_001098208 CCDS7204 P52597 7499401 MGI:2138741 RGD:620366 HNRNPF 601037 +HGNC:48812 HNRNPFP1 heterogeneous nuclear ribonucleoprotein F pseudogene 1 pseudogene pseudogene Approved 1p34.2 01p34.2 2013-06-13 2013-06-13 644449 ENSG00000227538 OTTHUMG00000006363 NG_006068 PGOHUM00000244689 +HGNC:5041 HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 (H) protein-coding gene gene with protein product Approved 5q35.3 05q35.3 hnRNPH HNRPH1 RNA binding motif containing 725 1997-08-28 2008-04-18 2015-09-08 3187 ENSG00000169045 OTTHUMG00000130908 uc003mkh.5 BC001348 NM_005520 CCDS4446 P31943 7499401 MGI:1891925 RGD:620840 HNRNPH1 601035 358708 +HGNC:48751 HNRNPH1P1 heterogeneous nuclear ribonucleoprotein H1 pseudogene 1 pseudogene pseudogene Approved 6q25.3 06q25.3 2013-06-13 2013-06-13 100132803 ENSG00000220305 OTTHUMG00000015938 NG_022337 PGOHUM00000257147 +HGNC:48810 HNRNPH1P2 heterogeneous nuclear ribonucleoprotein H1 pseudogene 2 pseudogene pseudogene Approved Xq27.3 Xq27.3 2013-06-13 2013-06-13 100129368 ENSG00000213924 OTTHUMG00000022581 NG_028793 PGOHUM00000241585 +HGNC:48811 HNRNPH1P3 heterogeneous nuclear ribonucleoprotein H1 pseudogene 3 pseudogene pseudogene Approved 5q11.2 05q11.2 2013-06-13 2013-06-13 402216 ENSG00000248854 OTTHUMG00000162319 NG_021850 PGOHUM00000235226 +HGNC:5042 HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 (H') protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "hnRNPH'|FTP3|HNRPH'" HNRPH2 RNA binding motif containing 725 1997-08-28 2008-04-18 2016-10-05 3188 ENSG00000126945 OTTHUMG00000022029 uc004ehm.4 U01923 NM_019597 CCDS14485 P55795 7499401 MGI:1201779 RGD:1549784 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HNRNPH2 HNRNPH2 300610 +HGNC:5043 HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 2H9 heterogeneous nuclear ribonucleoprotein 2H9 HNRPH3 heterogeneous nuclear ribonucleoprotein H3 (2H9) RNA binding motif containing 725 1998-02-11 2008-04-18 2016-02-01 2016-10-05 3189 ENSG00000096746 OTTHUMG00000018349 uc001jnw.5 NM_001322444 "CCDS7278|CCDS7279" P31942 8999868 MGI:1926462 RGD:1310019 HNRNPH3 602324 +HGNC:48750 HNRNPH3P1 heterogeneous nuclear ribonucleoprotein H3 pseudogene 1 pseudogene pseudogene Approved Xq21.1 Xq21.1 2013-06-13 2013-06-13 106480233 ENSG00000230247 OTTHUMG00000021904 NG_043755 PGOHUM00000241869 +HGNC:5044 HNRNPK heterogeneous nuclear ribonucleoprotein K protein-coding gene gene with protein product Approved 9q21.32 09q21.32 "CSBP|TUNP" transformation upregulated nuclear protein HNRPK 1994-12-15 2008-04-18 2016-10-05 3190 ENSG00000165119 OTTHUMG00000020107 uc004anl.5 XM_017014668 "CCDS6667|CCDS6668" P61978 8107114 MGI:99894 RGD:71058 HNRNPK 600712 457585 +HGNC:42374 HNRNPKP1 heterogeneous nuclear ribonucleoprotein K pseudogene 1 pseudogene pseudogene Approved 5q23.2 05q23.2 2011-07-05 2014-11-19 389322 ENSG00000250859 OTTHUMG00000163051 NG_021862 PGOHUM00000235390 +HGNC:42375 HNRNPKP2 heterogeneous nuclear ribonucleoprotein K pseudogene 2 pseudogene pseudogene Approved 2q22.1 02q22.1 2011-07-05 2014-11-19 389053 ENSG00000227347 OTTHUMG00000153576 NG_021524 PGOHUM00000240356 +HGNC:42376 HNRNPKP3 heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudogene pseudogene Approved 11p12 11p12 2011-07-05 2014-11-19 399881 ENSG00000251557 NR_033868 PGOHUM00000242216 +HGNC:42377 HNRNPKP4 heterogeneous nuclear ribonucleoprotein K pseudogene 4 pseudogene pseudogene Approved 3q11.2 03q11.2 2011-07-05 2014-11-18 644063 ENSG00000243547 OTTHUMG00000159028 NG_022255 PGOHUM00000238098 +HGNC:42378 HNRNPKP5 heterogeneous nuclear ribonucleoprotein K pseudogene 5 pseudogene pseudogene Approved 5p15.2 05p15.2 2011-07-05 2014-11-18 100874385 ENSG00000250662 OTTHUMG00000161816 NG_032511 PGOHUM00000235129 +HGNC:5045 HNRNPL heterogeneous nuclear ribonucleoprotein L protein-coding gene gene with protein product Approved 19q13.2 19q13.2 HNRPL RNA binding motif containing 725 1998-04-22 2007-08-16 2015-08-25 3191 ENSG00000104824 OTTHUMG00000182612 uc060yfy.1 X16135 XM_011526888 "CCDS33015|CCDS33016" P14866 2687284 MGI:104816 RGD:71059 HNRNPL 603083 +HGNC:25127 HNRNPLL heterogeneous nuclear ribonucleoprotein L like protein-coding gene gene with protein product Approved 2p22.1 02p22.1 HNRPLL RNA binding motif containing 725 2004-11-30 2013-06-12 2016-01-12 2016-10-05 92906 ENSG00000143889 OTTHUMG00000102075 BC008217 NM_138394 "CCDS46261|CCDS1796" Q8WVV9 18669861 MGI:1919942 RGD:1305861 611208 +HGNC:48748 HNRNPLP1 heterogeneous nuclear ribonucleoprotein L pseudogene 1 pseudogene pseudogene Approved 6p24.3 06p24.3 2013-06-12 2013-06-12 442157 ENSG00000233503 OTTHUMG00000014208 NG_022293 PGOHUM00000263832 +HGNC:48747 HNRNPLP2 heterogeneous nuclear ribonucleoprotein L pseudogene 2 pseudogene pseudogene Approved 15q14 15q14 2013-06-13 2013-06-13 644390 ENSG00000259917 OTTHUMG00000173388 NG_029295 PGOHUM00000258852 +HGNC:5046 HNRNPM heterogeneous nuclear ribonucleoprotein M protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "HTGR1|HNRNPM4|HNRPM4|CEAR" CEA receptor "NAGR1|HNRPM" RNA binding motif containing 725 2000-06-26 2008-04-18 2014-11-19 4670 ENSG00000099783 OTTHUMG00000182383 uc010dwe.4 L03532 XM_017026823 "CCDS12203|CCDS12204" P52272 "8441656|7558047" MGI:1926465 RGD:620369 HNRNPM 160994 +HGNC:48745 HNRNPMP1 heterogeneous nuclear ribonucleoprotein M pseudogene 1 pseudogene pseudogene Approved 15q15.3 15q15.3 2013-06-12 2013-06-12 645204 ENSG00000259335 OTTHUMG00000171870 NG_022108 PGOHUM00000246772 +HGNC:48746 HNRNPMP2 heterogeneous nuclear ribonucleoprotein M pseudogene 2 pseudogene pseudogene Approved 19q13.32 19q13.32 2013-06-12 2013-06-12 390948 ENSG00000269576 OTTHUMG00000183435 NG_021765 PGOHUM00000234727 +HGNC:5047 HNRNPR heterogeneous nuclear ribonucleoprotein R protein-coding gene gene with protein product Approved 1p36.12 01p36.12 hnRNP-R HNRPR RNA binding motif containing 725 1999-06-11 2007-08-16 2015-09-11 10236 ENSG00000125944 OTTHUMG00000003224 uc057dey.1 AF000364 NM_005826 "CCDS232|CCDS44085|CCDS60020|CCDS72726|CCDS72727" O43390 9421497 MGI:1891692 RGD:631348 HNRNPR 607201 +HGNC:44907 HNRNPRP1 heterogeneous nuclear ribonucleoprotein R pseudogene 1 pseudogene pseudogene Approved 10p12.31 10p12.31 2012-12-18 2012-12-18 100125387 ENSG00000223984 OTTHUMG00000017798 NG_006899 PGOHUM00000251234 +HGNC:44908 HNRNPRP2 heterogeneous nuclear ribonucleoprotein R pseudogene 2 pseudogene pseudogene Approved 11p14.1 11p14.1 2012-12-18 2012-12-18 100421354 ENSG00000255047 OTTHUMG00000166153 NG_024324 PGOHUM00000242200 +HGNC:44909 HNRNPRP3 heterogeneous nuclear ribonucleoprotein R pseudogene 3 pseudogene pseudogene Approved 4p14 04p14 2012-12-18 2012-12-18 100421323 NG_025201 PGOHUM00000245880 +HGNC:5048 HNRNPU heterogeneous nuclear ribonucleoprotein U protein-coding gene gene with protein product Approved 1q44 01q44 "SAF-A|hnRNPU|FLJ37978|FLJ30202" scaffold attachment factor A "HNRPU|HNRNPU-AS1|C1orf199|NCRNA00201" "HNRNPU antisense RNA 1|chromosome 1 open reading frame 199|non-protein coding RNA 201|HNRNPU antisense RNA 1 (non-protein coding)|heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)" 1997-08-28 2007-08-16 2016-06-03 2016-06-03 3192 ENSG00000153187 OTTHUMG00000040396 uc001iba.2 X65488 NM_031844 "CCDS31081|CCDS41479" Q00839 "7509195|8068679" MGI:1858195 RGD:620372 HNRNPU 602869 +HGNC:17011 HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "E1B-AP5|E1BAP5|FLJ12944" E1B 55kDa associated protein 5 HNRPUL1 2004-03-11 2008-04-18 2016-04-26 2016-04-26 11100 ENSG00000105323 OTTHUMG00000182740 uc002oqb.5 AJ007509 "NM_144732|NM_007040" "CCDS12576|CCDS12577|CCDS82351" Q9BUJ2 "9733834|12489984|23577092" MGI:2443517 RGD:1307456 HNRNPUL1 605800 +HGNC:25451 HNRNPUL2 heterogeneous nuclear ribonucleoprotein U like 2 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 DKFZp762N1910 HNRPUL2 heterogeneous nuclear ribonucleoprotein U-like 2 2005-09-29 2008-04-18 2016-06-10 2016-10-05 221092 ENSG00000214753 OTTHUMG00000167773 uc001nuw.4 XM_495877 CCDS41659 Q1KMD3 MGI:1915943 RGD:1562784 HNRNPUL2 +HGNC:49189 HNRNPUL2-BSCL2 HNRNPUL2-BSCL2 readthrough (NMD candidate) other readthrough Approved 11q12.3 11q12.3 2013-09-25 2014-10-06 2014-10-06 100534595 ENSG00000234857 OTTHUMG00000167772 NR_037946 +HGNC:19931 HNRNPUP1 heterogeneous nuclear ribonucleoprotein U pseudogene 1 pseudogene pseudogene Approved 14q21.2 14q21.2 HNRPUP heterogeneous nuclear ribonucleoprotein U pseudogene 2003-01-13 2013-06-12 2013-06-12 2014-11-18 319134 ENSG00000259051 OTTHUMG00000170706 NG_002512 PGOHUM00000248152 +HGNC:5049 HOAC hypoacusis 2 (autosomal recessive) phenotype phenotype only Approved reserved reserved ULG4 1988-08-01 2011-02-10 3193 2791656 +HGNC:25155 HOGA1 4-hydroxy-2-oxoglutarate aldolase 1 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "FLJ37472|DHDPS2|NPL2" "dihydrodipicolinate synthetase homolog 2 (E. coli)|N-acetylneuraminate pyruvate lyase 2 (putative)" "C10orf65|DHDPSL" "chromosome 10 open reading frame 65|dihydrodipicolinate synthase-like, mitochondrial" 2004-05-27 2010-12-19 2010-12-19 2016-10-05 112817 ENSG00000241935 OTTHUMG00000018859 uc001kny.4 BC011916 NM_138413 "CCDS7467|CCDS44469" Q86XE5 20797690 MGI:1914682 RGD:1310475 HOGA1 613597 242313 +HGNC:17512 HOMER1 homer scaffolding protein 1 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "Ves-1|SYN47|HOMER-1B" homer homolog 1 (Drosophila) Homer scaffolding proteins 871 2003-01-28 2015-02-18 2016-10-05 9456 ENSG00000152413 OTTHUMG00000134278 uc003kfy.5 BC015502 NM_004272 "CCDS43335|CCDS64188|CCDS64189" Q86YM7 "9808459|9808458" MGI:1347345 RGD:628725 HOMER1 604798 +HGNC:17513 HOMER2 homer scaffolding protein 2 protein-coding gene gene with protein product Approved 15q24.3 15q24.3 "CPD|Cupidin|Vesl-2|HOMER-2B|HOMER-2|HOMER-2A" homer homolog 2 (Drosophila) Homer scaffolding proteins 871 2003-01-28 2015-02-18 2015-02-18 9455 ENSG00000103942 OTTHUMG00000172462 uc002bjg.4 AF093264 XM_011522231 "CCDS45334|CCDS45336" Q9NSB8 "9808459|9808458" MGI:1347354 RGD:620705 HOMER2 604799 445129 +HGNC:20336 HOMER2P1 homer scaffolding protein 2 pseudogene 1 pseudogene pseudogene Approved 14q32.33 14q32.33 "homer homolog 2 pseudogene 1 (Drosophila)|HOMER2 pseudogene 1" 2003-01-24 2015-04-07 2015-04-07 317768 ENSG00000228966 OTTHUMG00000152103 NG_027315 PGOHUM00000247955 +HGNC:20334 HOMER2P2 homer scaffolding protein 2 pseudogene 2 pseudogene pseudogene Approved 14q32.33 14q32.33 "homer homolog 2 pseudogene 2 (Drosophila)|HOMER2 pseudogene 2" 2003-01-24 2015-04-07 2015-04-07 317769 ENSG00000238275 OTTHUMG00000152092 NG_027314 PGOHUM00000247933 +HGNC:17514 HOMER3 homer scaffolding protein 3 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 HOMER-3 homer homolog 3 (Drosophila) Homer scaffolding proteins 871 2003-01-28 2015-02-18 2015-02-18 9454 ENSG00000051128 OTTHUMG00000182995 uc002nkv.3 Y18894 NM_004838 "CCDS12391|CCDS46022|CCDS46023" Q9NSC5 "10653696|9808459" MGI:1347359 RGD:620706 HOMER3 604800 +HGNC:20164 HOMEZ homeobox and leucine zipper encoding protein-coding gene gene with protein product Approved 14q11.2 14q11.2 KIAA1443 KIAA1443 ZF class homeoboxes and pseudogenes 529 2003-11-21 2007-02-15 2007-02-15 2015-08-25 57594 ENSG00000215271 OTTHUMG00000172122 uc001wja.3 AB037864 NM_020834 CCDS45085 Q8IX15 12925734 MGI:2678023 RGD:628904 HOMEZ 608119 8582 +HGNC:19884 HOOK1 hook microtubule tethering protein 1 protein-coding gene gene with protein product Approved 1p32.1 01p32.1 HK1 hook homolog 1 (Drosophila) 2003-11-25 2016-07-14 2016-07-14 51361 ENSG00000134709 OTTHUMG00000008990 uc001czo.3 AF044923 NM_015888 CCDS612 Q9UJC3 9927460 MGI:1925213 RGD:1309987 HOOK1 607820 +HGNC:19885 HOOK2 hook microtubule tethering protein 2 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 HK2 hook homolog 2 (Drosophila) 2003-11-25 2016-07-14 2016-10-06 29911 ENSG00000095066 OTTHUMG00000180372 uc002muz.3 AF044924 NM_013312 "CCDS42507|CCDS42508" Q96ED9 9927460 MGI:2181664 RGD:1310171 HOOK2 607824 +HGNC:23576 HOOK3 hook microtubule tethering protein 3 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 HK3 hook homolog 3 (Drosophila) 2003-11-25 2016-07-14 2016-07-14 84376 ENSG00000168172 OTTHUMG00000165278 uc003xpr.4 AK090540 NM_032410 CCDS6139 Q86VS8 9927460 MGI:2443554 RGD:1560960 HOOK3 607825 +HGNC:24961 HOPX HOP homeobox protein-coding gene gene with protein product Approved 4q12 04q12 "LAGY|HOP|OB1|NECC1|SMAP31" homeobox only domain PRD class homeoboxes and pseudogenes 521 2007-08-20 2014-11-19 84525 ENSG00000171476 OTTHUMG00000128768 uc003hcb.3 XM_017008728 "CCDS3507|CCDS47062|CCDS54767" Q9BPY8 12297045 MGI:1916782 RGD:621841 HOPX 607275 8583 +HGNC:25245 HORMAD1 HORMA domain containing 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "DKFZP434A1315|CT46" cancer/testis antigen 46 2005-01-04 2016-10-05 84072 ENSG00000143452 OTTHUMG00000035005 uc001evk.3 AL136755 NM_032132 "CCDS967|CCDS55633" Q86X24 "11230166|15999985" MGI:1915231 RGD:1564960 HORMAD1 609824 +HGNC:28383 HORMAD2 HORMA domain containing 2 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "MGC26710|CT46.2" 2005-01-04 2015-09-11 150280 ENSG00000176635 OTTHUMG00000150881 uc003agy.4 AK098703 NM_152510 CCDS46683 Q8N7B1 12477932 MGI:1923078 RGD:1565447 HORMAD2 +HGNC:50729 HORMAD2-AS1 HORMAD2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q12.2 22q12.2 "MTMR3-AS1|NONHSAG033653" 2014-06-13 2014-08-28 101929664 ENSG00000227117 OTTHUMG00000151289 NR_110541 25144376 +HGNC:33510 HOTAIR HOX transcript antisense RNA non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 "HOXC-AS4|HOXC11-AS1|NCRNA00072" "HOXC cluster antisense RNA 4 (non-protein coding)|non-protein coding RNA 72" HOX transcript antisense RNA (non-protein coding) Long non-coding RNAs 788 2008-06-04 2012-08-15 2014-11-19 100124700 ENSG00000228630 OTTHUMG00000152934 uc009zne.5 DQ926657 NR_003716 "17604720|17604716" MGI:3826586 611400 HOTAIR +HGNC:37117 HOTAIRM1 HOXA transcript antisense RNA, myeloid-specific 1 non-coding RNA RNA, long non-coding Approved 7p15.2 07p15.2 "HOXA-AS1|NCRNA00179|HOXA1-AS1" "HOXA cluster antisense RNA 1 (non-protein coding)|non-protein coding RNA 179" "hox transcript antisense RNA, myeloid-specific 1 (non-protein coding)|HOXA transcript antisense RNA, myeloid-specific 1 (non-protein coding)" Long non-coding RNAs 788 2009-06-23 2012-08-15 2014-10-22 100506311 ENSG00000233429 OTTHUMG00000158089 uc003syg.4 NR_038366 19144990 RGD:7716070 HOTAIRM1 +HGNC:37461 HOTTIP HOXA distal transcript antisense RNA non-coding RNA RNA, long non-coding Approved 7p15.2 07p15.2 "HOXA-AS6|RP1-170O19.3|HOXA13-AS1" "HOXA cluster antisense RNA 6 (non-protein coding)|HOXA transcript at the distal tip|HOXA13 antisense RNA 1 (non-protein coding)" NCRNA00213 "non-protein coding RNA 213|HOXA distal transcript antisense RNA (non-protein coding)" Long non-coding RNAs 788 2009-10-16 2011-04-21 2012-08-15 2014-11-19 100316868 ENSG00000243766 OTTHUMG00000063751 uc064chw.1 GU724873 NR_037843 "21483457|21423168|24381249" MGI:3642509 614060 HOTTIP +HGNC:43745 HOXA-AS2 HOXA cluster antisense RNA 2 non-coding RNA RNA, long non-coding Approved 7p15.2 07p15.2 HOXA3as HOXA cluster antisense RNA 2 (non-protein coding) Long non-coding RNAs 788 2012-02-18 2012-08-15 2014-10-22 285943 ENSG00000253552 OTTHUMG00000063274 uc064cfs.1 BC035889 NR_122069 23649634 616068 HOXA3as +HGNC:43748 HOXA-AS3 HOXA cluster antisense RNA 3 non-coding RNA RNA, long non-coding Approved 7p15.2 07p15.2 HOXA6as HOXA cluster antisense RNA 3 (non-protein coding) Long non-coding RNAs 788 2012-02-18 2012-08-15 2014-10-22 100133311 ENSG00000254369 OTTHUMG00000158092 uc064cgo.1 AK091933 NR_038831 MGI:1919878 HOXA6as +HGNC:5099 HOXA1 homeobox A1 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1F|HOX1" homeo box A1 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-09-07 3198 ENSG00000105991 OTTHUMG00000023207 uc003sye.4 NM_153620 "CCDS5401|CCDS5402" P49639 1973146 MGI:96170 RGD:2812 HOXA1 142955 8584 123364 +HGNC:5103 HOXA2 homeobox A2 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 HOX1K homeo box A2 HOXL subclass homeoboxes 518 1993-02-18 2005-12-22 2015-08-25 3199 ENSG00000105996 OTTHUMG00000023208 uc003syh.4 NM_006735 CCDS5403 O43364 1358459 MGI:96174 RGD:2813 HOXA2 604685 8545 159716 +HGNC:5104 HOXA3 homeobox A3 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1E|HOX1" homeo box A3 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3200 ENSG00000105997 OTTHUMG00000023209 uc064cfr.1 XM_011515343 CCDS5404 O43365 "1973146|1358459" MGI:96175 RGD:1561431 HOXA3 142954 8588 +HGNC:5105 HOXA4 homeobox A4 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1D|HOX1" homeo box A4 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2014-11-19 3201 ENSG00000197576 OTTHUMG00000023213 uc064cgf.1 NM_002141 CCDS5405 Q00056 "1973146|1358459" MGI:96176 RGD:2814 HOXA4 142953 8589 +HGNC:5106 HOXA5 homeobox A5 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1C|HOX1" homeo box A5 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-09-07 3202 ENSG00000106004 OTTHUMG00000023214 uc003syn.2 NM_019102 CCDS5406 P20719 "1973146|1358459" MGI:96177 HOXA5 142952 8590 +HGNC:5107 HOXA6 homeobox A6 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1B|HOX1" homeo box A6 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3203 ENSG00000106006 OTTHUMG00000023216 uc003syo.3 NM_024014 CCDS5407 P31267 "1973146|1358459" MGI:96178 RGD:1590236 HOXA6 142951 8636 +HGNC:5108 HOXA7 homeobox A7 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1A|HOX1" homeo box A7 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3204 ENSG00000122592 OTTHUMG00000023217 uc003sys.4 NM_006896 CCDS5408 P31268 "1973146|1358459" MGI:96179 RGD:9471641 HOXA7 142950 8637 +HGNC:5109 HOXA9 homeobox A9 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1G|HOX1" homeo box A9 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2014-11-18 3205 ENSG00000078399 OTTHUMG00000023220 uc003syt.4 NM_152739 CCDS5409 P31269 "1973146|1358459" MGI:96180 RGD:1310001 HOXA9 142956 8638 +HGNC:5100 HOXA10 homeobox A10 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1H|HOX1" homeo box A10 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3206 ENSG00000253293 OTTHUMG00000023436 uc011jzm.3 NR_037939 CCDS5410 P31260 "1973146|1358459" MGI:96171 RGD:9410935 HOXA10 142957 8585 +HGNC:40281 HOXA10-AS HOXA10 antisense RNA non-coding RNA RNA, long non-coding Approved 7p15.2 07p15.2 HOXA-AS4 "HOXA cluster antisense RNA 4 (non-protein coding)|HOXA cluster antisense RNA 4" 2012-02-18 2014-01-09 2014-01-09 2014-11-19 100874323 ENSG00000253187 OTTHUMG00000158203 "AW195063|BM549446" NR_046609 +HGNC:5101 HOXA11 homeobox A11 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1I|HOX1" homeo box A11 HOXL subclass homeoboxes 518 1990-07-05 2005-12-22 2016-10-12 3207 ENSG00000005073 OTTHUMG00000023437 uc003syx.4 NM_005523 CCDS5411 P31270 "1973146|1358459" MGI:96172 RGD:1564605 LRG_561|http://www.lrg-sequence.org/LRG/LRG_561 HOXA11 142958 8586 123347 +HGNC:24957 HOXA11-AS HOXA11 antisense RNA non-coding RNA RNA, long non-coding Approved 7p15.2 07p15.2 "HOXA11-AS1|HOXA11S|HOXA-AS5|NCRNA00076" "non-protein coding RNA 76|HOXA cluster antisense RNA 5 (non-protein coding)|HOXA11 antisense RNA 1 (non-protein coding)" HOXA11AS "homeobox A11 antisense|HOXA11 antisense RNA (non-protein coding)" Long non-coding RNAs 788 2008-06-20 2012-03-14 2012-08-15 2014-11-18 221883 ENSG00000240990 OTTHUMG00000158205 uc064chh.1 NR_002795 "9745033|12050232" 607530 Hoxa11as +HGNC:5102 HOXA13 homeobox A13 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "HOX1J|HOX1" homeo box A13 HOXL subclass homeoboxes 518 1990-07-05 2005-12-22 2015-08-25 3209 ENSG00000106031 OTTHUMG00000023438 uc003szb.2 NM_000522 CCDS5412 P31271 "1973146|1358459" MGI:96173 RGD:1562483 HOXA13 142959 8587 122462 +HGNC:5098 HOXA@ homeobox A cluster other region Approved 7p15.2 07p15.2 HOX1@ homeo box A cluster 1986-01-01 2005-12-22 2011-06-01 3197 "1973146|1358459" +HGNC:43744 HOXB-AS1 HOXB cluster antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.32 17q21.32 HOXB cluster antisense RNA 1 (non-protein coding) 2012-02-18 2012-08-15 2012-10-12 100874362 ENSG00000230148 OTTHUMG00000132491 uc031rdb.2 "BF875734|BE676309|AI292043" NR_102279 +HGNC:40284 HOXB-AS2 HOXB cluster antisense RNA 2 non-coding RNA RNA, long non-coding Approved 17q21.32 17q21.32 HOXB cluster antisense RNA 2 (non-protein coding) 2012-02-18 2012-08-15 2014-11-19 100874350 ENSG00000239552 OTTHUMG00000159921 uc060gvu.1 "DA447098|BF999536" +HGNC:40283 HOXB-AS3 HOXB cluster antisense RNA 3 non-coding RNA RNA, long non-coding Approved 17q21.32 17q21.32 HOXB cluster antisense RNA 3 (non-protein coding) 2012-02-18 2012-02-22 2012-08-15 2014-11-19 404266 ENSG00000233101 OTTHUMG00000159919 uc060gvo.1 BC010732 NR_033203 +HGNC:40285 HOXB-AS4 HOXB cluster antisense RNA 4 non-coding RNA RNA, long non-coding Approved 17q21.32 17q21.32 HOXB cluster antisense RNA 4 (non-protein coding) 2012-02-18 2012-08-15 2014-11-19 100874351 ENSG00000242207 OTTHUMG00000159902 uc060gwm.1 "DB109357|AI940041" +HGNC:5111 HOXB1 homeobox B1 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2|HOX2I" homeo box B1 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-09-07 3211 ENSG00000120094 OTTHUMG00000159929 uc002ink.2 NM_002144 CCDS32675 P14653 "1973146|1358459" MGI:96182 RGD:1310298 HOXB1 142968 8639 311103 +HGNC:5113 HOXB2 homeobox B2 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2|HOX2H" homeo box B2 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3212 ENSG00000173917 OTTHUMG00000159930 uc002inm.5 XM_005257275 CCDS11527 P14652 "1973146|1358459" MGI:96183 RGD:2319509 HOXB2 142967 8641 +HGNC:5114 HOXB3 homeobox B3 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2|HOX2G" homeo box B3 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3213 ENSG00000120093 OTTHUMG00000159922 uc010dbf.4 XM_011524707 "CCDS11528|CCDS82153|CCDS82154" P14651 "1973146|1358459" MGI:96184 RGD:1310780 HOXB3 142966 8642 +HGNC:5115 HOXB4 homeobox B4 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2|HOX2F" homeo box B4 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3214 ENSG00000182742 OTTHUMG00000159920 uc002inp.4 NM_024015 CCDS11529 P17483 "1973146|1358459" MGI:96185 RGD:1560113 HOXB4 142965 8643 +HGNC:5116 HOXB5 homeobox B5 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2|HOX2A" homeo box B5 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-09-07 3215 ENSG00000120075 OTTHUMG00000159913 uc002inr.4 NM_002147 CCDS11530 P09067 "1973146|1358459" MGI:96186 RGD:1562292 HOXB5 142960 8644 +HGNC:5117 HOXB6 homeobox B6 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2|HOX2B" homeo box B6 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3216 ENSG00000108511 OTTHUMG00000159912 uc010dbh.2 XM_011524727 CCDS11531 P17509 "1973146|1358459" MGI:96187 RGD:1562142 HOXB6 142961 8645 +HGNC:5118 HOXB7 homeobox B7 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2|HOX2C" homeo box B7 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3217 ENSG00000260027 OTTHUMG00000170231 uc002inv.4 NM_004502 CCDS11532 P09629 "1973146|1358459" MGI:96188 RGD:1559918 HOXB7 142962 8646 +HGNC:5119 HOXB8 homeobox B8 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2|HOX2D" homeo box B8 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3218 ENSG00000120068 OTTHUMG00000159904 uc002inw.3 XM_017024564 CCDS11533 P17481 "1973146|1358459" MGI:96189 RGD:1586211 HOXB8 142963 8647 +HGNC:5120 HOXB9 homeobox B9 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "HOX2E|HOX2" homeo box B9 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3219 ENSG00000170689 OTTHUMG00000159907 uc002inx.4 NM_024017 CCDS11534 P17482 "1973146|1358459" MGI:96190 RGD:1306158 HOXB9 142964 8648 +HGNC:5112 HOXB13 homeobox B13 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 homeo box B13 HOXL subclass homeoboxes 518 1999-07-01 2005-12-22 2016-10-12 10481 ENSG00000159184 OTTHUMG00000159900 uc002ioa.4 U57052 NM_006361 CCDS11536 Q92826 "8756292|9665387" MGI:107730 RGD:1309113 LRG_771|http://www.lrg-sequence.org/LRG/LRG_771 HOXB13 604607 8640 292052 +HGNC:5110 HOXB@ homeobox B cluster other region Approved 17q21.32 17q21.32 HOX2@ homeo box B cluster 1986-01-01 2005-12-22 2011-06-01 3210 "1973146|1358459" +HGNC:43749 HOXC-AS1 HOXC cluster antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 HOXC cluster antisense RNA 1 (non-protein coding) 2012-02-18 2012-08-15 2014-02-06 100874363 ENSG00000250451 OTTHUMG00000160024 uc031zck.1 "BU619815|CA429707" NR_047504 +HGNC:43750 HOXC-AS2 HOXC cluster antisense RNA 2 non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 HOXC cluster antisense RNA 2 (non-protein coding) 2012-02-18 2012-08-15 2012-10-12 100874364 ENSG00000250133 OTTHUMG00000160030 uc031zcj.1 "AI935658|BF195843" NR_047505 +HGNC:43751 HOXC-AS3 HOXC cluster antisense RNA 3 non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 HOXC cluster antisense RNA 3 (non-protein coding) 2012-02-18 2012-08-15 2012-10-12 100874365 ENSG00000251151 OTTHUMG00000160025 uc058ott.1 BC035260 NR_047506 +HGNC:5126 HOXC4 homeobox C4 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HOX3|HOX3E" homeo box C4 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-09-07 3221 ENSG00000198353 OTTHUMG00000160036 uc001seu.5 NM_014620 CCDS8873 P09017 "1973146|1358459" MGI:96195 RGD:1586210 HOXC4 142974 8653 +HGNC:5127 HOXC5 homeobox C5 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HOX3D|HOX3" homeo box C5 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3222 ENSG00000172789 OTTHUMG00000160028 uc001sew.4 NM_018953 CCDS8872 Q00444 "1973146|1358459" MGI:96196 RGD:1307584 HOXC5 142973 8654 +HGNC:5128 HOXC6 homeobox C6 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HOX3C|HOX3" homeo box C6 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3223 ENSG00000197757 OTTHUMG00000160027 uc001sev.4 NM_153693 "CCDS8871|CCDS41792" P09630 "1973146|1358459" MGI:96197 RGD:620626 HOXC6 142972 8655 +HGNC:5129 HOXC8 homeobox C8 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HOX3|HOX3A" homeo box C8 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3224 ENSG00000037965 OTTHUMG00000160032 uc001ser.4 X99680 NM_022658 CCDS8870 P31273 "1973146|1358459" MGI:96198 RGD:2821 HOXC8 142970 8656 +HGNC:5130 HOXC9 homeobox C9 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HOX3|HOX3B" homeo box C9 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3225 ENSG00000180806 OTTHUMG00000160033 uc058oud.1 NM_006897 CCDS8869 P31274 1973146 MGI:96199 RGD:1595784 HOXC9 142971 8657 +HGNC:5122 HOXC10 homeobox C10 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 HOX3I homeo box C10 HOXL subclass homeoboxes 518 1993-02-18 2005-12-22 2015-08-25 3226 ENSG00000180818 OTTHUMG00000160031 uc001sen.4 NM_017409 CCDS8868 Q9NYD6 1358459 MGI:96192 RGD:1307250 HOXC10 605560 8649 +HGNC:5123 HOXC11 homeobox C11 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 HOX3H homeo box C11 HOXL subclass homeoboxes 518 1991-06-06 2005-12-22 2015-08-25 3227 ENSG00000123388 OTTHUMG00000160011 uc058oto.1 NM_014212 CCDS8867 O43248 "1973146|1358459" MGI:96193 RGD:6489991 HOXC11 605559 8650 +HGNC:5124 HOXC12 homeobox C12 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HOX3|HOX3F|HOC3F" homeo box C12 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3228 ENSG00000123407 OTTHUMG00000160010 uc010soq.3 AF328962 NM_173860 CCDS8866 P31275 "1973146|1358459" MGI:96194 RGD:1310539 HOXC12 142975 8651 +HGNC:5125 HOXC13 homeobox C13 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HOX3|HOX3G" homeo box C13 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3229 ENSG00000123364 OTTHUMG00000160008 uc001sei.4 NM_017410 CCDS8865 P31276 "1973146|1358459" MGI:99560 RGD:1563984 HOXC13 142976 8652 317546 +HGNC:43753 HOXC13-AS HOXC13 antisense RNA non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 HOXC-AS5 "HOXC cluster antisense RNA 5 (non-protein coding)|HOXC cluster antisense RNA 5" 2012-02-18 2014-01-09 2014-01-09 2014-01-09 100874366 ENSG00000249641 OTTHUMG00000160009 CN364530 NR_047507 +HGNC:5121 HOXC@ homeobox C cluster other region Approved 12q12-q13 12q12-q13 HOX3@ homeo box C cluster 1986-01-01 2005-12-22 2011-06-01 3220 "1973146|1358459" +HGNC:43756 HOXD-AS2 HOXD cluster antisense RNA 2 non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 HOXD cluster antisense RNA 2 (non-protein coding) 2012-02-18 2012-08-15 2012-10-12 100506783 ENSG00000237380 OTTHUMG00000154174 uc061pyc.1 BC034000 NR_038435 +HGNC:5132 HOXD1 homeobox D1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "HOX4|HOX4G" homeo box D1 HOXL subclass homeoboxes 518 1990-07-05 2005-12-22 2015-08-25 3231 ENSG00000128645 OTTHUMG00000132512 uc002ukv.5 XM_005246507 CCDS2271 Q9GZZ0 "1973146|1358459" MGI:96201 RGD:1309179 HOXD1 142987 8658 +HGNC:5137 HOXD3 homeobox D3 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "HOX4A|HOX4|HOX1D" homeo box D3 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3232 ENSG00000128652 OTTHUMG00000187566 uc061pyi.1 XM_005246510 CCDS2270 P31249 "1973146|1358459" MGI:96207 RGD:1588601 HOXD3 142980 8662 +HGNC:5138 HOXD4 homeobox D4 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "HOX4B|HOX4" homeo box D4 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-09-07 3233 ENSG00000170166 OTTHUMG00000132515 uc002uks.4 XM_005246514 CCDS2269 P09016 "1973146|1358459" MGI:96208 RGD:1309690 HOXD4 142981 8663 +HGNC:5139 HOXD8 homeobox D8 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "HOX4|HOX4E" homeo box D8 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3234 ENSG00000175879 OTTHUMG00000132513 uc002uko.4 NM_001199747 "CCDS2268|CCDS56148|CCDS56149" P13378 "1973146|1358459" MGI:96209 RGD:6489440 HOXD8 142985 8664 +HGNC:5140 HOXD9 homeobox D9 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "HOX4C|HOX4" homeo box D9 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3235 ENSG00000128709 OTTHUMG00000132516 uc010zex.3 NM_014213 CCDS2267 P28356 "1973146|1358459" MGI:96210 RGD:1582908 HOXD9 142982 8665 +HGNC:5133 HOXD10 homeobox D10 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "HOX4|HOX4D" homeo box D10 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2016-10-12 3236 ENSG00000128710 OTTHUMG00000132511 uc002ukj.4 NM_002148 CCDS2266 P28358 "1973146|1358459" MGI:96202 RGD:1306511 LRG_246|http://www.lrg-sequence.org/LRG/LRG_246 HOXD10 142984 8659 189174 +HGNC:5134 HOXD11 homeobox D11 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "HOX4|HOX4F" homeo box D11 HOXL subclass homeoboxes 518 1990-06-15 2005-12-22 2015-08-25 3237 ENSG00000128713 OTTHUMG00000132510 uc010fqx.4 NM_021192 CCDS2265 P31277 "1973146|1358459" MGI:96203 RGD:7730597 HOXD11 142986 8660 +HGNC:5135 HOXD12 homeobox D12 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 HOX4H homeo box D12 HOXL subclass homeoboxes 518 1991-05-08 2005-12-22 2015-08-25 3238 ENSG00000170178 OTTHUMG00000150358 uc010zev.2 NM_021193 CCDS46456 P35452 "1675198|1973146" MGI:96204 RGD:1309797 HOXD12 142988 8661 +HGNC:5136 HOXD13 homeobox D13 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "HOX4I|SPD" homeo box D13 HOXL subclass homeoboxes 518 1991-05-08 2005-12-22 2015-08-25 3239 ENSG00000128714 OTTHUMG00000132431 uc002ukf.2 AF005219 XM_011511068 CCDS2264 P35453 "2574852|1973146" MGI:96205 RGD:1308417 HOXD13 142989 8597 122466 +HGNC:5131 HOXD@ homeobox D cluster other region Approved 2q31.1 02q31.1 HOX4@ homeo box D cluster 1986-01-01 2005-12-22 2011-06-01 3230 "1973146|1358459" +HGNC:5141 HP haptoglobin protein-coding gene gene with protein product Approved 16q22.2 16q22.2 Sushi domain containing 1179 2001-06-22 2015-08-25 3240 ENSG00000257017 OTTHUMG00000173009 uc002fbr.5 NM_005143 "CCDS45524|CCDS45525|CCDS82010" P00738 "11109501|9352226" MGI:96211 RGD:2825 HP 140100 S01.972 +HGNC:24973 HP1BP3 heterochromatin protein 1 binding protein 3 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 HP1-BP74 heterochromatin protein 1, binding protein 3 2005-05-16 2016-02-23 2016-02-23 50809 ENSG00000127483 OTTHUMG00000002622 uc001bdw.2 BC053327 NM_016287 CCDS30621 Q5SSJ5 24830416 MGI:109369 RGD:735099 HP1BP3 616072 +HGNC:5143 HPC1 hereditary prostate cancer 1 phenotype phenotype only Approved 1q24-q25 01q24-q25 1998-09-17 2011-02-10 "8910276|9497242" +HGNC:5144 HPCA hippocalcin protein-coding gene gene with protein product Approved 1p35.1 01p35.1 EF-hand domain containing 863 1994-12-14 2016-10-05 3208 ENSG00000121905 OTTHUMG00000004017 uc001bwh.4 BC001777 NM_002143 CCDS370 P84074 "8166736|9931466" MGI:1336200 RGD:620060 HPCA 142622 426083 +HGNC:5145 HPCAL1 hippocalcin like 1 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "BDR1|HLP2|VILIP-3" "visinin-like protein 3|calcium-binding protein BDR-1" EF-hand domain containing 863 1994-12-14 2016-01-12 2016-01-12 3241 ENSG00000115756 OTTHUMG00000090451 uc002raj.5 NM_002149 CCDS1671 P37235 "8038222|14739275" MGI:1855689 RGD:708375 HPCAL1 600207 +HGNC:18212 HPCAL4 hippocalcin like 4 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "HLP4|DKFZp761G122" EF-hand domain containing 863 2002-05-01 2014-11-19 51440 ENSG00000116983 OTTHUMG00000009246 uc001cdr.5 AB001105 NM_016257 "CCDS441|CCDS72761" Q9UM19 10520747 MGI:2157521 RGD:708491 HPCAL4 +HGNC:5146 HPCX hereditary prostate cancer, X-linked phenotype phenotype only Approved Xq27-q28 Xq27-q28 1999-04-22 2011-02-10 9566 9771711 300147 +HGNC:5147 HPD 4-hydroxyphenylpyruvate dioxygenase protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "4-HPPD|4HPPD|GLOD3" glyoxalase domain containing 3 PPD 1992-12-08 2013-09-19 3242 ENSG00000158104 OTTHUMG00000169081 uc001ubj.4 BC014790 NM_002150 "CCDS9224|CCDS53839" P32754 MGI:96213 RGD:61974 HPD 609695 122470 objectId:2621 1.13.11.27 +HGNC:28242 HPDL 4-hydroxyphenylpyruvate dioxygenase like protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "MGC15668|4-HPPD-L" GLOXD1 glyoxalase domain containing 1 2005-07-26 2007-03-14 2016-03-16 2016-03-16 84842 ENSG00000186603 OTTHUMG00000007681 uc001cne.4 BC007293 NM_032756 CCDS519 Q96IR7 12477932 MGI:2444646 RGD:1310014 HPDL +HGNC:5149 HPE1 holoprosencephaly 1, alobar phenotype phenotype only Approved 21q22.3 21q22.3 1992-12-01 2007-11-16 3244 7485157 236100 +HGNC:26051 HPF1 histone PARylation factor 1 protein-coding gene gene with protein product Approved 4q33 04q33 FLJ20534 C4orf27 chromosome 4 open reading frame 27 2006-06-15 2016-04-27 2016-04-27 2016-04-27 54969 ENSG00000056050 OTTHUMG00000160960 uc003isl.5 BC010367 NM_017867 CCDS3813 Q9NWY4 "11230166|27067600" MGI:1919862 RGD:1311747 616614 +HGNC:5153 HPFH2 hereditary persistence of fetal hemoglobin, heterocellular, Indian type phenotype phenotype only Approved 7q36 07q36 1992-04-10 2014-02-04 3247 142335 +HGNC:5154 HPGD hydroxyprostaglandin dehydrogenase 15-(NAD) protein-coding gene gene with protein product Approved 4q34.1 04q34.1 SDR36C1 short chain dehydrogenase/reductase family 36C, member 1 Short chain dehydrogenase/reductase superfamily 743 1991-07-16 2016-10-05 3248 ENSG00000164120 OTTHUMG00000160772 uc003itu.3 NM_000860 "CCDS3821|CCDS54821|CCDS58933|CCDS58934|CCDS58935" P15428 19027726 MGI:108085 RGD:620087 HPGD 601688 168077 objectId:1384 1.1.1.141 +HGNC:17890 HPGDS hematopoietic prostaglandin D synthase protein-coding gene gene with protein product Approved 4q22.3 04q22.3 "GSTS|PGDS|H-PGDS|PGD2|GSTS1-1|GSTS1" glutathione S-transferase sigma Glutathione S-transferases 567 2009-07-14 2016-10-05 27306 ENSG00000163106 OTTHUMG00000130974 uc003hte.2 D82073 NM_014485 CCDS3640 O60760 "9323136|9353279|11672424" MGI:1859384 RGD:69251 HPGDS 602598 objectId:1381 +HGNC:23824 HPLH1 hemophagocytic lymphohistiocytosis 1 phenotype phenotype only Approved 9q21.3-q22 09q21.3-q22 FHL1 2003-12-11 2011-02-10 27259 9915955 267700 +HGNC:5155 HPN hepsin protein-coding gene gene with protein product Approved 19q13.11 19q13.11 TMPRSS1 transmembrane protease, serine 1 Proteases, serine 738 1992-12-07 2008-12-08 2016-10-05 3249 ENSG00000105707 OTTHUMG00000182474 uc002nxq.3 NM_002151 CCDS32993 P05981 2835076 MGI:1196620 RGD:61982 HPN 142440 S01.224 +HGNC:47041 HPN-AS1 HPN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.11-q13.12 19q13.11-q13.12 2013-04-21 2016-10-11 100128675 ENSG00000227392 OTTHUMG00000182475 uc010xsi.3 NR_024561 +HGNC:37055 HPP1 hyperpigmentation, progressive, 1 phenotype phenotype only Approved 19pter-p13.1 19pter-p13.1 FPH1 familial progressive hyperpigmentation 1 2009-03-25 2012-03-02 2012-03-02 2012-03-02 780897 16709486 +HGNC:5156 HPR haptoglobin-related protein protein-coding gene gene with protein product Approved 16q22.2 16q22.2 Sushi domain containing 1179 2001-06-22 2014-11-19 3250 ENSG00000261701 OTTHUMG00000173010 uc002fby.4 BC160066 NM_020995 CCDS42193 P00739 "2987228|16778136" HPR 140210 S01.974 +HGNC:5157 HPRT1 hypoxanthine phosphoribosyltransferase 1 protein-coding gene gene with protein product Approved Xq26.2-q26.3 Xq26.2-q26.3 HGPRT Lesch-Nyhan syndrome HPRT 2001-06-22 2008-08-01 2016-10-11 3251 ENSG00000165704 OTTHUMG00000022452 uc004exl.5 M26434 NM_000194 CCDS14641 P00492 12175903 MGI:96217 RGD:2826 Hypoxanthine Guanine Phosphoribosyltransferase 1; Lech-Nyhan Syndrome|http://www.ibiblio.org/dnam/mainpage.html HPRT1 308000 122476 2.4.2.8 +HGNC:51622 HPRT1P1 hypoxanthine phosphoribosyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 4p15.32 04p15.32 2015-03-26 2015-03-26 100130067 ENSG00000251644 OTTHUMG00000160176 NG_022006 PGOHUM00000299773 +HGNC:5160 HPRT1P2 hypoxanthine phosphoribosyltransferase 1 pseudogene 2 pseudogene pseudogene Approved 5p13.3 05p13.3 HPRTP2 hypoxanthine phosphoribosyltransferase pseudogene 2 2001-06-22 2015-03-26 2015-03-26 2015-03-26 3254 ENSG00000250587 OTTHUMG00000161944 NG_003031 "6089358|1675192" PGOHUM00000300908 +HGNC:5161 HPRT1P3 hypoxanthine phosphoribosyltransferase 1 pseudogene 3 pseudogene pseudogene Approved 11q21 11q21 "HPRTP3|HPRTP4" "hypoxanthine phosphoribosyltransferase pseudogene 3|hypoxanthine phosphoribosyltransferase pseudogene 4" 2001-06-22 2015-03-26 2015-03-26 2015-03-26 3255 ENSG00000256752 OTTHUMG00000167744 NG_007296 PGOHUM00000290654 +HGNC:5158 HPRT2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:5159 HPRTP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:5163 HPS1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 BLOC3S1 HPS "Hermansky-Pudlak syndrome|Hermansky-Pudlak syndrome 1" Biogenesis of lysosomal organelles complex 3 1039 1990-05-14 2002-05-01 2016-02-25 2016-10-12 3257 ENSG00000107521 OTTHUMG00000018876 uc057vhe.1 U79136 "NM_000195|NM_182637|NM_182638|NM_182639" "CCDS7475|CCDS7476" Q92902 "8541858|7573033" MGI:2177763 RGD:69193 "Albinism Database|http://albinismdb.med.umn.edu/|Mutations of the ep-Gene|http://www.retina-international.org/files/sci-news/epmut.htm|LRG_562|http://www.lrg-sequence.org/LRG/LRG_562" HPS1 604982 122480 +HGNC:15597 HPS3 HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 protein-coding gene gene with protein product Approved 3q24 03q24 "SUTAL|BLOC2S1" Hermansky-Pudlak syndrome 3 Biogenesis of lysosomal organelles complex 2 1038 2001-06-13 2016-02-25 2016-10-12 84343 ENSG00000163755 OTTHUMG00000159548 uc003ewu.2 AY033141 NM_032383 "CCDS3140|CCDS77836" Q969F9 11455388 MGI:2153839 RGD:1310548 "Mutations of the HPS3 Gene|http://www.retina-international.org/files/sci-news/hps3mut.htm|Albinism Database|http://albinismdb.med.umn.edu/|LRG_563|http://www.lrg-sequence.org/LRG/LRG_563" HPS3 606118 122483 +HGNC:15844 HPS4 HPS4, biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 "KIAA1667|LE|BLOC3S2" Hermansky-Pudlak syndrome 4 Biogenesis of lysosomal organelles complex 3 1039 2001-06-28 2016-02-25 2016-10-12 89781 ENSG00000100099 OTTHUMG00000030459 uc003acl.5 NM_022081 "CCDS13835|CCDS46677" Q9NQG7 "11836498|12663659" MGI:2177742 RGD:1308070 "Mutations of the Human light ear Gene (le, HPS4)|http://www.retina-international.org/files/sci-news/lemut.htm|LRG_590|http://www.lrg-sequence.org/LRG/LRG_590" HPS4 606682 122486 +HGNC:17022 HPS5 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 BLOC2S2 Hermansky-Pudlak syndrome 5 Biogenesis of lysosomal organelles complex 2 1038 2002-06-13 2016-02-25 2016-10-12 11234 ENSG00000110756 OTTHUMG00000166612 uc001mod.2 AB023234 NM_181507 "CCDS7836|CCDS7837" Q9UPZ3 "10231032|10094488" MGI:2180307 RGD:1311916 LRG_586|http://www.lrg-sequence.org/LRG/LRG_586 HPS5 607521 122490 +HGNC:18817 HPS6 HPS6, biogenesis of lysosomal organelles complex 2 subunit 3 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "FLJ22501|BLOC2S3" Hermansky-Pudlak syndrome 6 Biogenesis of lysosomal organelles complex 2 1038 2004-02-04 2016-02-25 2016-10-12 79803 ENSG00000166189 OTTHUMG00000018945 uc001kuj.4 BC009258 NM_024747 CCDS7527 Q86YV9 12548288 MGI:2181763 RGD:631341 LRG_564|http://www.lrg-sequence.org/LRG/LRG_564 HPS6 607522 122492 +HGNC:5164 HPSE heparanase protein-coding gene gene with protein product Approved 4q21.23 04q21.23 "HPA|HSE1|HPSE1" 1999-09-28 2016-10-05 10855 ENSG00000173083 OTTHUMG00000130425 uc003hok.4 AF144325 NM_006665 "CCDS3602|CCDS54774|CCDS56337" Q9Y251 "10395325|10395326" MGI:1343124 RGD:61969 HPSE 604724 +HGNC:18374 HPSE2 heparanase 2 (inactive) protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "HPA2|HPR2" UFS "urofacial syndrome|heparanase 2" 2002-09-02 2014-05-09 2016-03-24 60495 ENSG00000172987 OTTHUMG00000018880 uc001kpn.3 AF282885 NM_021828 "CCDS7477|CCDS53567|CCDS53568|CCDS53566" Q8WWQ2 "11027606|20560210|9199567|20576607" MGI:2685814 RGD:1307959 HPSE2 613469 235189 +HGNC:5165 HPT hypoparathyroidism phenotype phenotype only Approved Xq27 Xq27 HYPX 2001-06-22 2014-02-04 3258 16167084 307700 +HGNC:5168 HPV6AI1 human papillomavirus (type 6a) integration site 1 other virus integration site Approved 10q24 10q24 1994-05-19 2010-06-16 3259 X77607 8118820 604461 +HGNC:5166 HPV18I1 human papilloma virus (type 18) integration site 1 other virus integration site Approved 8q24 08q24 "HPV18I|D8S37" 1991-08-19 2010-06-16 3260 3028716 167959 +HGNC:5167 HPV18I2 human papillomavirus (type 18) integration site 2 other virus integration site Approved 12q14 12q14 PAL2 papillomavirus-associated locus 2 1991-08-19 2010-06-17 3261 "X88931|X88932" "3033295|7592643" 167960 +HGNC:5169 HPVC1 human papillomavirus (type 18) E5 central sequence-like 1 non-coding RNA RNA, long non-coding Approved 7p11.2 07p11.2 "PE5L|HPV18E5L" 1997-09-12 2013-07-05 3262 ENSG00000280920 OTTHUMG00000189727 uc064drv.1 X85042 NR_004422 7581372 600762 +HGNC:5171 HPX hemopexin protein-coding gene gene with protein product Approved 11p15.4 11p15.4 2001-06-22 2016-10-05 3263 ENSG00000110169 OTTHUMG00000133399 uc001mdg.3 J03048 NM_000613 CCDS7763 P02790 "2989777|2842511" MGI:105112 RGD:62040 HPX 142290 +HGNC:16071 HPYR1 Helicobacter pylori responsive 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.22 08q24.22 "HPRG1|NCRNA00027|LINC00027" "non-protein coding RNA 27|long intergenic non-protein coding RNA 27" Helicobacter pylori responsive 1 2001-07-16 2008-09-05 2012-10-16 93668 ENSG00000253521 OTTHUMG00000164645 uc011liz.1 AF200341 NR_026684 +HGNC:5172 HR hair growth associated protein-coding gene gene with protein product Approved 8p21.3 08p21.3 AU ALUNC "hairless (mouse) homolog|hairless homolog (mouse)" 1995-07-11 2012-12-07 2016-10-05 55806 ENSG00000168453 OTTHUMG00000097089 uc003xas.4 AF039196 NM_018411 "CCDS6022|CCDS6023" O43593 "10051399|9463324|24334705" MGI:96223 RGD:620634 HR 602302 122495 +HGNC:5173 HRAS HRas proto-oncogene, GTPase protein-coding gene gene with protein product Approved 11p15.5 11p15.5 HRAS1 "v-Ha-ras Harvey rat sarcoma viral oncogene homolog|Harvey rat sarcoma viral oncogene homolog" RAS type GTPase family 389 2001-06-22 2016-06-10 2016-10-12 3265 ENSG00000174775 OTTHUMG00000131919 uc010qvx.3 AJ437024 NM_176795 "CCDS7698|CCDS7699" P01112 MGI:96224 RGD:2827 LRG_506|http://www.lrg-sequence.org/LRG/LRG_506 HRAS 190020 122499 objectId:2822 +HGNC:14922 HRASLS HRAS like suppressor protein-coding gene gene with protein product Approved 3q29 03q29 "H-REV107|HRASLS1" HRAS like suppressor family 1227 2001-04-10 2016-01-19 2016-04-25 57110 ENSG00000127252 OTTHUMG00000156104 uc003fta.5 AB030816 XM_011513035 CCDS3303 Q9HDD0 MGI:1351473 RGD:1309485 HRASLS 606487 +HGNC:17824 HRASLS2 HRAS like suppressor 2 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 FLJ20556 HRAS like suppressor family 1227 2002-01-29 2016-01-19 2016-10-05 54979 ENSG00000133328 OTTHUMG00000167851 uc001nxg.1 NM_017878 CCDS8046 Q9NWW9 HRASLS2 613866 +HGNC:24978 HRASLS5 HRAS like suppressor family member 5 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 HRLP5 HRAS-like suppressor family, member 5 HRAS like suppressor family 1227 2005-11-14 2015-11-17 2016-10-05 117245 ENSG00000168004 OTTHUMG00000167806 uc001nwy.3 AJ416558 NM_054108 "CCDS8044|CCDS53646|CCDS53647" Q96KN8 MGI:1913977 RGD:1308376 HRASLS5 611474 +HGNC:5178 HRC histidine rich calcium binding protein protein-coding gene gene with protein product Approved 19q13.33 19q13.33 MGC133236 histidine-rich calcium-binding protein 1990-09-30 2001-11-28 2016-10-06 3270 ENSG00000130528 OTTHUMG00000183203 uc002pmv.4 NM_002152 CCDS12759 P23327 2037293 MGI:96226 RGD:727864 HRC 142705 +HGNC:33872 HRCT1 histidine rich carboxyl terminus 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "LGLL338|PRO537|UNQ338" 2008-09-17 2014-11-19 646962 ENSG00000196196 OTTHUMG00000154146 uc003zyr.1 NM_001039792 CCDS35012 Q6UXD1 12975309 MGI:1917945 RGD:2323278 HRCT1 +HGNC:5180 HRES1 HTLV-1 related endogenous sequence other unknown Approved 1q42 01q42 "HRES-1/p28|HRES-1" 1991-06-07 2014-11-19 3272 X16660 P13985 1783388 143025 +HGNC:5181 HRG histidine rich glycoprotein protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "HRGP|HPRG" "histidine-proline rich glycoprotein|thrombophilia due to elevated HRG" histidine-rich glycoprotein Cystatins, type 4 968 1989-05-25 2016-01-26 2016-10-12 3273 ENSG00000113905 OTTHUMG00000156578 uc003fqq.5 NM_000412 CCDS3280 P04196 1678514 MGI:2146636 RGD:619808 LRG_601|http://www.lrg-sequence.org/LRG/LRG_601 HRG 142640 220905 LI25-005 +HGNC:5182 HRH1 histamine receptor H1 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 Histamine receptors 187 1994-12-12 2016-10-05 3269 ENSG00000196639 OTTHUMG00000129719 uc010hdr.4 XM_017006283 CCDS2604 P35367 8003029 MGI:107619 RGD:2830 HRH1 600167 objectId:262 +HGNC:5183 HRH2 histamine receptor H2 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 Histamine receptors 187 1994-12-12 2016-10-06 3274 ENSG00000113749 OTTHUMG00000130660 uc003mdd.3 XM_005265904 "CCDS4395|CCDS47344" P25021 1714721 MGI:108482 RGD:2831 HRH2 142703 objectId:263 +HGNC:5184 HRH3 histamine receptor H3 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 GPCR97 Histamine receptors 187 2000-01-07 2015-08-25 11255 ENSG00000101180 OTTHUMG00000032899 uc002ycf.3 AF140538 NM_007232 CCDS13493 Q9Y5N1 10347254 MGI:2139279 RGD:620630 HRH3 604525 objectId:264 +HGNC:17383 HRH4 histamine receptor H4 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "H4R|HH4R|AXOR35|GPCR105|GPRv53" Histamine receptors 187 2002-11-26 2014-11-19 59340 ENSG00000134489 OTTHUMG00000131945 uc002kvi.3 AF312230 NM_021624 "CCDS11887|CCDS45841" Q9H3N8 "11118334|10973974" MGI:2429635 RGD:620631 HRH4 606792 objectId:265 +HGNC:5185 HRK harakiri, BCL2 interacting protein protein-coding gene gene with protein product Approved 12q24.22 12q24.22 DP5 death protein 5 harakiri, BCL2-interacting protein (contains only BH3 domain) BCL2 homology region 3 (BH3) only 1277 1999-05-21 2014-03-07 2016-10-06 8739 ENSG00000135116 OTTHUMG00000169328 uc001twe.5 U76376 XM_017020146 CCDS9181 O00198 9130713 MGI:1201608 RGD:70549 HRK 603447 +HGNC:20846 HRNR hornerin protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "S100a18|S100A16|FLG3" filaggrin family member 3 EF-hand domain containing 863 2004-10-05 2015-09-07 388697 ENSG00000197915 OTTHUMG00000012243 uc001ezt.3 AB104446 XM_373868 CCDS30859 Q86YZ3 MGI:3046938 RGD:1307660 HRNR 616293 +HGNC:24979 HS1BP3 HCLS1 binding protein 3 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 "HS1-BP3|FLJ14249" 2006-08-15 2014-11-19 64342 ENSG00000118960 OTTHUMG00000122099 uc002rdw.2 NM_022460 CCDS1700 Q53T59 "10590261|15699368" MGI:1913224 RGD:1311331 HS1BP3 609359 +HGNC:41474 HS1BP3-IT1 HS1BP3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2p24.1 02p24.1 HS1BP3 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874343 ENSG00000231948 OTTHUMG00000151789 uc032nge.1 NR_046836 +HGNC:5193 HS2ST1 heparan sulfate 2-O-sulfotransferase 1 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 KIAA0448 Sulfotransferases, membrane bound 763 1999-10-14 2014-11-19 9653 ENSG00000153936 OTTHUMG00000010255 uc010osk.3 AB007917 NM_012262 "CCDS711|CCDS44171" Q7LGA3 9455484 MGI:1346049 RGD:1305366 HS2ST1 604844 +HGNC:5194 HS3ST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding gene gene with protein product Approved 4p15.33 04p15.33 3OST1 heparan sulfate (glucosamine) 3-O-sulfotransferase 1 Sulfotransferases, membrane bound 763 1999-05-05 2015-12-04 2016-10-05 9957 ENSG00000002587 OTTHUMG00000090547 uc003gmq.4 AF019386 NM_005114 CCDS3408 O14792 9988767 MGI:1201606 RGD:71084 HS3ST1 603244 2.8.2.23 +HGNC:5195 HS3ST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 3OST2 heparan sulfate (glucosamine) 3-O-sulfotransferase 2 Sulfotransferases, membrane bound 763 1999-05-05 2015-12-04 2016-10-05 9956 ENSG00000122254 OTTHUMG00000094785 uc002dli.4 AF105374 NM_006043 CCDS10606 Q9Y278 9988767 MGI:1333802 RGD:727787 HS3ST2 604056 2.8.2.23 +HGNC:5196 HS3ST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding gene gene with protein product Approved 17p12 17p12 "3OST3A1|30ST3A1" heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 Sulfotransferases, membrane bound 763 1999-05-05 2015-12-04 2015-12-04 9955 ENSG00000153976 OTTHUMG00000058768 uc002gob.1 AF105376 NM_006042 CCDS11165 Q9Y663 9988767 MGI:1333861 RGD:1561262 HS3ST3A1 604057 2.8.2.23 +HGNC:5198 HS3ST3B1 heparan sulfate-glucosamine 3-sulfotransferase 3B1 protein-coding gene gene with protein product Approved 17p12 17p12 "3OST3B1|30ST3B1" heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 Sulfotransferases, membrane bound 763 1999-05-05 2015-12-04 2015-12-04 9953 ENSG00000125430 OTTHUMG00000058810 uc002goh.2 AF105377 NM_006041 CCDS11167 Q9Y662 9988767 MGI:1333853 RGD:1307326 HS3ST3B1 604058 2.8.2.23 +HGNC:5200 HS3ST4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 3OST4 heparan sulfate (glucosamine) 3-O-sulfotransferase 4 Sulfotransferases, membrane bound 763 1999-05-05 2015-12-04 2016-10-05 9951 ENSG00000182601 OTTHUMG00000059978 uc002dof.3 AF105378 NM_006040 CCDS53995 Q9Y661 9988767 MGI:1333792 RGD:11422907 HS3ST4 604059 2.8.2.23 +HGNC:19419 HS3ST5 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding gene gene with protein product Approved 6q21-q22.1 06q21-q22.1 3-OST-5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 Sulfotransferases, membrane bound 763 2003-06-11 2015-12-04 2016-10-11 222537 ENSG00000249853 OTTHUMG00000015412 uc003pwh.5 AF503292 NM_153612 CCDS34517 Q8IZT8 12138164 MGI:2441996 RGD:1306379 HS3ST5 609407 +HGNC:14178 HS3ST6 heparan sulfate-glucosamine 3-sulfotransferase 6 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 HS3ST5 "heparan sulfate (glucosamine) 3-O-sulfotransferase 5|heparan sulfate (glucosamine) 3-O-sulfotransferase 6" Sulfotransferases, membrane bound 763 2000-12-21 2003-06-13 2015-12-04 2015-12-04 64711 ENSG00000162040 OTTHUMG00000047860 uc002cnf.5 NM_001009606 CCDS45381 Q96QI5 11157797 MGI:3580487 RGD:1584381 HS3ST6 +HGNC:5201 HS6ST1 heparan sulfate 6-O-sulfotransferase 1 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 HS6ST Sulfotransferases, membrane bound 763 1999-12-07 2002-08-23 2016-10-05 9394 ENSG00000136720 OTTHUMG00000153542 uc002tpt.5 AB006179 NM_004807 CCDS42748 O60243 9535912 MGI:1354958 RGD:1309218 HS6ST1 604846 281487 2.8.2.- +HGNC:31835 HS6ST1P1 heparan sulfate 6-O-sulfotransferase 1 pseudogene 1 pseudogene pseudogene Approved 1p36.12 01p36.12 HS6ST1P heparan sulfate 6-O-sulfotransferase 1 pseudogene 2004-10-29 2010-03-19 2010-03-19 2014-11-19 388605 ENSG00000187952 OTTHUMG00000002942 NG_005670 HS6ST1P1 +HGNC:19133 HS6ST2 heparan sulfate 6-O-sulfotransferase 2 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 Sulfotransferases, membrane bound 763 2002-08-19 2014-11-18 90161 ENSG00000171004 OTTHUMG00000022430 uc011mve.2 AB067776 NM_147174 "CCDS48169|CCDS48170" Q96MM7 10644753 MGI:1354959 RGD:1564397 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HS6ST2 HS6ST2 300545 +HGNC:40870 HS6ST2-AS1 HS6ST2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq26.2 Xq26.2 HS6ST2 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100874102 ENSG00000235849 OTTHUMG00000022427 uc031tkk.2 NR_046691 +HGNC:19134 HS6ST3 heparan sulfate 6-O-sulfotransferase 3 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 Sulfotransferases, membrane bound 763 2002-10-07 2016-10-05 266722 ENSG00000185352 OTTHUMG00000017232 uc001vmw.4 AF539426 NM_153456 CCDS9481 Q8IZP7 MGI:1354960 RGD:1305888 HS6ST3 609401 +HGNC:5203 HSBP1 heat shock factor binding protein 1 protein-coding gene gene with protein product Approved 16q23.3 16q23.3 1998-07-30 2014-11-19 3281 ENSG00000230989 OTTHUMG00000176653 uc002fgy.3 AF068754 NM_001537 CCDS45534 O75506 "9649501|9493008" MGI:1915446 RGD:628632 HSBP1 604553 +HGNC:37243 HSBP1L1 heat shock factor binding protein 1 like 1 protein-coding gene gene with protein product Approved 18q23 18q23 "FLJ10967|MGC189743" 2009-09-21 2016-06-10 2016-06-10 440498 ENSG00000226742 OTTHUMG00000180375 uc002lno.5 NM_001136180 CCDS45886 C9JCN9 MGI:1913505 RGD:2301798 HSBP1L1 +HGNC:20053 HSBP1P1 heat shock factor binding protein 1 pseudogene 1 pseudogene pseudogene Approved 14q23.1 14q23.1 2003-01-13 2014-11-19 326296 ENSG00000258650 OTTHUMG00000171142 NG_002548 PGOHUM00000248188 +HGNC:37300 HSBP1P2 heat shock factor binding protein 1 pseudogene 2 pseudogene pseudogene Approved 4q25 04q25 2009-09-21 2009-09-21 100288483 ENSG00000166530 OTTHUMG00000161107 XM_002342465 +HGNC:28913 HSCB HscB mitochondrial iron-sulfur cluster cochaperone protein-coding gene gene with protein product Approved 22q12.1 22q12.1 "HSC20|DNAJC20|Jac1" DnaJ (Hsp40) homolog, subfamily C, member 20 HscB iron-sulfur cluster co-chaperone homolog (E. coli) DNAJ (HSP40) heat shock proteins 584 2006-10-30 2016-05-24 2016-05-24 150274 ENSG00000100209 OTTHUMG00000151092 uc003aea.4 AY191719 NM_172002 "CCDS13845|CCDS82704" Q8IWL3 "12938016|16952052" MGI:2141135 RGD:1311005 HSCB 608142 +HGNC:5217 HSD3B1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding gene gene with protein product Approved 1p12 01p12 SDR11E1 short chain dehydrogenase/reductase family 11E, member 1 "HSDB3|HSD3B" Short chain dehydrogenase/reductase superfamily 743 1989-05-24 2014-11-18 3283 ENSG00000203857 OTTHUMG00000012525 uc001ehv.2 S45679 NM_000862 CCDS903 P14060 "2779585|19027726" "MGI:96233|MGI:96234|MGI:96235|MGI:96236|MGI:104645|MGI:109598|MGI:3711284|MGI:3782634" RGD:1308676 HSD3B1 109715 "1.1.1.145|5.3.3.1" +HGNC:5218 HSD3B2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding gene gene with protein product Approved 1p12 01p12 SDR11E2 short chain dehydrogenase/reductase family 11E, member 2 Short chain dehydrogenase/reductase superfamily 743 1992-09-10 2014-11-18 3284 ENSG00000203859 OTTHUMG00000012526 uc021ost.2 BC038419 NM_000198 CCDS902 P26439 "1363812|19027726" "MGI:96233|MGI:96234|MGI:96235|MGI:96236|MGI:104645|MGI:109598|MGI:3711284|MGI:3782634" RGD:67377 HSD3B2 613890 122515 objectId:2622 "1.1.1.145|5.3.3.1" +HGNC:18324 HSD3B7 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "C(27)-3BETA-HSD|SDR11E3" short chain dehydrogenase/reductase family 11E, member 3 Short chain dehydrogenase/reductase superfamily 743 2003-01-13 2016-07-18 80270 ENSG00000099377 OTTHUMG00000132417 uc002eaf.3 AF277719 XM_011545960 "CCDS10698|CCDS45466" Q9H2F3 "11067870|19027726" MGI:2141879 RGD:628727 HSD3B7 607764 122517 "1.1.1.-|1.1.1.181" +HGNC:5219 HSD3BP1 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 1 pseudogene pseudogene Approved 1p12 01p12 1998-02-26 2014-11-18 391076 ENSG00000187481 OTTHUMG00000012522 NG_022802 10552929 PGOHUM00000244871 +HGNC:5220 HSD3BP2 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 2 pseudogene pseudogene Approved 1p12 01p12 1998-02-26 2014-11-19 440606 ENSG00000203858 OTTHUMG00000012521 NG_005676 10552929 PGOHUM00000244870 +HGNC:5221 HSD3BP3 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 3 pseudogene pseudogene Approved 1p12 01p12 1998-02-26 2014-11-19 441900 ENSG00000249798 OTTHUMG00000012955 NG_027848 10552929 PGOHUM00000244872 +HGNC:5222 HSD3BP4 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4 pseudogene pseudogene Approved 1p12 01p12 1998-02-26 2014-11-19 128102 ENSG00000203855 OTTHUMG00000012957 NR_033781 10552929 PGOHUM00000244873 +HGNC:5223 HSD3BP5 hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 5 pseudogene pseudogene Approved 1p12 01p12 1998-02-26 2014-11-19 391081 ENSG00000198857 OTTHUMG00000012961 NG_022803 10552929 PGOHUM00000244874 +HGNC:5208 HSD11B1 hydroxysteroid 11-beta dehydrogenase 1 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 SDR26C1 short chain dehydrogenase/reductase family 26C, member 1 "HSD11B|HSD11" hydroxysteroid (11-beta) dehydrogenase 1 Short chain dehydrogenase/reductase superfamily 743 1991-11-14 2016-06-03 2016-10-05 3290 ENSG00000117594 OTTHUMG00000036481 uc021pin.2 BC012593 NM_005525 CCDS1489 P28845 "1885595|19027726" MGI:103562 RGD:2834 HSD11B1 600713 173206 objectId:2763 1.1.1.146 +HGNC:30419 HSD11B1L hydroxysteroid 11-beta dehydrogenase 1 like protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "SCDR10|SDR26C2" "short chain dehydrogenase/reductase 10|short chain dehydrogenase/reductase family 26C, member 2" hydroxysteroid (11-beta) dehydrogenase 1-like Short chain dehydrogenase/reductase superfamily 743 2006-03-31 2016-06-03 2016-06-03 374875 ENSG00000167733 OTTHUMG00000178586 uc002mco.5 AY268353 NM_198706 "CCDS12144|CCDS12145|CCDS12146|CCDS45931|CCDS45932|CCDS58641|CCDS58642|CCDS74266" Q7Z5J1 12477932 HSD11B1L 1.1.1.- +HGNC:5209 HSD11B2 hydroxysteroid 11-beta dehydrogenase 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 SDR9C3 short chain dehydrogenase/reductase family 9C, member 3 hydroxysteroid (11-beta) dehydrogenase 2 Short chain dehydrogenase/reductase superfamily 743 1994-11-18 2016-06-03 2016-10-05 3291 ENSG00000176387 OTTHUMG00000137507 uc002etd.4 U14631 NM_000196 CCDS10837 P80365 "7859916|8611140|19027726" MGI:104720 RGD:2835 HSD11B2 614232 122502 1.1.1.- +HGNC:5210 HSD17B1 hydroxysteroid 17-beta dehydrogenase 1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "HSD17|MGC138140|SDR28C1" "Estradiol 17-beta-dehydrogenase-1|short chain dehydrogenase/reductase family 28CE, member 1" "EDHB17|EDH17B2" hydroxysteroid (17-beta) dehydrogenase 1 Short chain dehydrogenase/reductase superfamily 743 1991-06-05 2016-06-03 2016-06-03 3292 ENSG00000108786 OTTHUMG00000180243 uc002hzw.4 NM_000413 "CCDS11428|CCDS82126" P14061 "2330005|19027726" MGI:105077 RGD:2836 HSD17B1 109684 1.1.1.62 +HGNC:5216 HSD17B1P1 hydroxysteroid 17-beta dehydrogenase 1 pseudogene 1 pseudogene pseudogene Approved 17q21.2 17q21.2 SDR28C1P1 "EDHB17|EDH17B1|HSD17BP1" "hydroxysteroid (17-beta) dehydrogenase pseudogene 1|hydroxysteroid (17-beta) dehydrogenase 1 pseudogene 1" 1989-05-24 2010-01-08 2016-06-03 2016-10-06 643646 ENSG00000108785 OTTHUMG00000180242 U34879 NG_006749.2 "8703123|2779584" +HGNC:5211 HSD17B2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding gene gene with protein product Approved 16q23.3 16q23.3 "HSD17|SDR9C2" short chain dehydrogenase/reductase family 9C, member 2 hydroxysteroid (17-beta) dehydrogenase 2 Short chain dehydrogenase/reductase superfamily 743 1994-09-14 2016-06-03 2016-10-05 3294 ENSG00000086696 OTTHUMG00000137631 uc002fgv.4 NM_002153 CCDS10936 P37059 "7759109|19027726" MGI:1096386 RGD:621803 HSD17B2 109685 1.1.1.62 +HGNC:5212 HSD17B3 hydroxysteroid 17-beta dehydrogenase 3 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 SDR12C2 short chain dehydrogenase/reductase family 12C, member 2 hydroxysteroid (17-beta) dehydrogenase 3 Short chain dehydrogenase/reductase superfamily 743 1994-09-14 2016-06-03 2016-10-05 3293 ENSG00000130948 OTTHUMG00000020292 uc004awa.2 NM_000197 CCDS6716 P37058 "8075637|19027726" MGI:107177 RGD:621805 HSD17B3 605573 122511 1.1.1.62 +HGNC:5213 HSD17B4 hydroxysteroid 17-beta dehydrogenase 4 protein-coding gene gene with protein product Approved 5q23.1 05q23.1 "MFE-2|DBP|SDR8C1" "17beta-estradiol dehydrogenase type IV|peroxisomal multifunctional protein 2|17-beta-HSD IV|17-beta-hydroxysteroid dehydrogenase 4|D-bifunctional protein, peroxisomal|D-3-hydroxyacyl-CoA dehydratase|3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase|beta-keto-reductase|beta-hydroxyacyl dehydrogenase|short chain dehydrogenase/reductase family 8C, member 1" hydroxysteroid (17-beta) dehydrogenase 4 Short chain dehydrogenase/reductase superfamily 743 1994-09-14 2016-06-03 2016-10-05 3295 ENSG00000133835 OTTHUMG00000128899 uc003ksj.4 NM_000414 "CCDS4126|CCDS56378|CCDS56379|CCDS78051|CCDS78052" P51659 "8938456|19027726" MGI:105089 RGD:621806 HSD17B4 601860 122513 "4.2.1.107|1.1.1.35" +HGNC:23316 HSD17B6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "HSE|RODH|SDR9C6" "oxidative 3-alpha-hydroxysteroid-dehydrogenase|3(alpha->beta)-hydroxysteroid epimerasel|retinol dehydrogenase|oxidoreductase|NAD+ -dependent 3 alpha-hydroxysteroid dehydrogenase|3-hydroxysteroid epimerase|short chain dehydrogenase/reductase family 9C, member 6" "hydroxysteroid (17-beta) dehydrogenase 6 homolog (mouse)|hydroxysteroid (17-beta) dehydrogenase 6" Short chain dehydrogenase/reductase superfamily 743 2005-02-23 2016-06-03 2016-06-03 8630 ENSG00000025423 OTTHUMG00000170854 uc058pra.1 AF016509 NM_003725 CCDS8925 O14756 "11165032|19027726" MGI:1351670 RGD:708343 HSD17B6 606623 "1.1.1.62|1.1.1.63|1.1.1.105" +HGNC:5215 HSD17B7 hydroxysteroid 17-beta dehydrogenase 7 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "PRAP|SDR37C1" short chain dehydrogenase/reductase family 37C, member 1 hydroxysteroid (17-beta) dehydrogenase 7 Short chain dehydrogenase/reductase superfamily 743 2000-07-31 2016-06-03 2016-10-05 51478 ENSG00000132196 OTTHUMG00000034420 uc001gci.4 AF098786 NM_016371 "CCDS1242|CCDS76234" P56937 "10544267|10419022|19027726" MGI:1330808 RGD:2837 HSD17B7 606756 1.1.1.270 +HGNC:18689 HSD17B7P1 hydroxysteroid 17-beta dehydrogenase 7 pseudogene 1 pseudogene pseudogene Approved 1q44 01q44 hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 1 2002-05-28 2016-06-03 2016-06-03 148818 ENSG00000232908 OTTHUMG00000040197 AJ297815 NG_001308 PGOHUM00000296863 +HGNC:28120 HSD17B7P2 hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2 pseudogene pseudogene Approved 10p11.1 10p11.1 "HSD17B7|bA291L22.1" hydroxysteroid (17-beta) dehydrogenase 7 pseudogene 2 2004-01-08 2016-06-03 2016-06-03 158160 ENSG00000099251 OTTHUMG00000017993 NR_003086 10544267 PGOHUM00000290106 +HGNC:3554 HSD17B8 hydroxysteroid 17-beta dehydrogenase 8 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "HKE6|D6S2245E|RING2|KE6|H2-KE6|SDR30C1" short chain dehydrogenase/reductase family 30C, member 1 FABGL "FabG (beta-ketoacyl-[acyl-carrier-protein] reductase, E coli) like (E. coli)|hydroxysteroid (17-beta) dehydrogenase 8" Short chain dehydrogenase/reductase superfamily 743 2000-06-26 2002-02-22 2016-06-03 2016-10-05 7923 ENSG00000204228 OTTHUMG00000031117 uc011izs.3 D82061 NM_014234 CCDS4769 Q92506 "8812499|19027726" MGI:95911 RGD:1303158 HSD17B8 601417 1.1.1.62 +HGNC:4800 HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "ERAB|MHBD|17b-HSD10|ABAD|SDR5C1|MRPP2|CAMR" "type 10 17b-HSD|type 10 17beta-hydroxysteroid dehydrogenase|AB-binding alcohol dehydrogenase|short chain dehydrogenase/reductase family 5C, member 1|mitochondrial RNase P subunit 2" "HADH2|MRXS10" "hydroxyacyl-Coenzyme A dehydrogenase, type II, hydroxyacyl-Coenzyme A dehydrogenase, type II|mental retardation, X-linked, syndromic 10|hydroxysteroid (17-beta) dehydrogenase 10" "X-linked mental retardation|Short chain dehydrogenase/reductase superfamily" "103|743" 1997-04-25 2006-11-22 2016-06-03 2016-10-12 3028 ENSG00000072506 OTTHUMG00000021612 uc004dsl.2 U96132 NM_004493 "CCDS14354|CCDS35300" Q99714 "9338779|16899120|19027726|18984158|17236142" MGI:1333871 RGD:69231 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HSD17B10|LRG_450|http://www.lrg-sequence.org/LRG/LRG_450" HSD17B10 300256 122504 1.1.1.35 +HGNC:22960 HSD17B11 hydroxysteroid 17-beta dehydrogenase 11 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "RetSDR2|17-BETA-HSD11|17-BETA-HSDXI|PAN1B|SDR16C2" "retinal short-chain dehydrogenase/reductase 2|short chain dehydrogenase/reductase family 16C, member 2" DHRS8 "dehydrogenase/reductase (SDR family) member 8|hydroxysteroid (17-beta) dehydrogenase 11" Short chain dehydrogenase/reductase superfamily 743 2003-12-02 2006-11-22 2016-06-03 2016-06-03 51170 ENSG00000198189 OTTHUMG00000130594 uc003hqp.3 AF126780 NM_016245 CCDS3619 Q8NBQ5 "11165019|12697717|19027726" MGI:2149821 RGD:1303235 HSD17B11 612831 1.1.1.- +HGNC:18646 HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "KAR|SDR12C1" "3-ketoacyl-CoA reductase|short chain dehydrogenase/reductase family 12C, member 1" hydroxysteroid (17-beta) dehydrogenase 12 Short chain dehydrogenase/reductase superfamily 743 2002-05-20 2016-06-03 2016-07-22 51144 ENSG00000149084 OTTHUMG00000166403 uc001mxq.5 AF078850 XM_017017881 CCDS7905 Q53GQ0 "12482854|19027726" MGI:1926967 RGD:708367 HSD17B12 609574 1.1.1.62 +HGNC:18685 HSD17B13 hydroxysteroid 17-beta dehydrogenase 13 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "SCDR9|SDR16C3" short chain dehydrogenase/reductase family 16C, member 3 hydroxysteroid (17-beta) dehydrogenase 13 Short chain dehydrogenase/reductase superfamily 743 2002-05-27 2016-06-03 2016-06-03 345275 ENSG00000170509 OTTHUMG00000130602 uc003hqo.3 NM_178135 "CCDS3618|CCDS47097" Q7Z5P4 19027726 MGI:2140804 RGD:1359553 HSD17B13 612127 1.1.-.- +HGNC:23238 HSD17B14 hydroxysteroid 17-beta dehydrogenase 14 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "retSDR3|SDR47C1" "retinal short-chain dehydrogenase/reductase 3|short chain dehydrogenase/reductase family 47C, member 1" DHRS10 "dehydrogenase/reductase (SDR family) member 10|hydroxysteroid (17-beta) dehydrogenase 14" Short chain dehydrogenase/reductase superfamily 743 2003-12-02 2006-11-22 2016-06-03 2016-06-03 51171 ENSG00000087076 OTTHUMG00000183328 uc002pkv.2 AF126781 NM_016246 CCDS12736 Q9BPX1 "10800688|17067289|19027726" MGI:1913315 RGD:1588673 HSD17B14 612832 +HGNC:16475 HSDL1 hydroxysteroid dehydrogenase like 1 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 SDR12C3 short chain dehydrogenase/reductase family 12C, member 3 Short chain dehydrogenase/reductase superfamily 743 2004-12-15 2016-10-05 83693 ENSG00000103160 OTTHUMG00000137635 uc002fhk.3 AF237684 NM_031463 "CCDS10942|CCDS54046" Q3SXM5 "12153137|19027726" MGI:1919802 RGD:1308433 HSDL1 +HGNC:18572 HSDL2 hydroxysteroid dehydrogenase like 2 protein-coding gene gene with protein product Approved 9q32 09q32 SDR13C1 short chain dehydrogenase/reductase family 13C, member 1 C9orf99 chromosome 9 open reading frame 99 Short chain dehydrogenase/reductase superfamily 743 2004-11-26 2015-07-16 84263 ENSG00000119471 OTTHUMG00000020504 uc004bga.3 AY093428 NM_032303 "CCDS43864|CCDS56582" Q6YN16 "12834046|19027726" MGI:1919729 RGD:1305387 HSDL2 +HGNC:5224 HSF1 heat shock transcription factor 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 HSTF1 1994-09-12 2015-09-07 3297 ENSG00000185122 OTTHUMG00000174604 uc003zbt.5 M64673 NM_005526 CCDS6419 Q00613 1871105 MGI:96238 RGD:620913 HSF1 140580 +HGNC:5225 HSF2 heat shock transcription factor 2 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 1994-09-12 2016-10-05 3298 ENSG00000025156 OTTHUMG00000016216 uc003pyu.3 M65217 NM_004506 "CCDS5124|CCDS47470" Q03933 1871106 MGI:96239 RGD:68395 HSF2 140581 +HGNC:5226 HSF2BP heat shock transcription factor 2 binding protein protein-coding gene gene with protein product Approved 21q22.3 21q22.3 heat shock factor 2 binding protein 1999-08-26 2014-11-19 11077 ENSG00000160207 OTTHUMG00000086863 uc002zdi.3 AB007131 NM_007031 CCDS13697 O75031 9651507 MGI:1921627 RGD:1565879 HSF2BP 604554 +HGNC:5227 HSF4 heat shock transcription factor 4 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 CTM cataract, Marner 1998-03-17 2016-10-05 3299 ENSG00000102878 OTTHUMG00000178325 uc059voy.1 D87673 NM_001538 "CCDS42175|CCDS45510" Q9ULV5 "8972228|10488131|12089525" MGI:1347058 RGD:1310808 HSF4 602438 122520 +HGNC:26862 HSF5 heat shock transcription factor 5 protein-coding gene gene with protein product Approved 17q22 17q22 FLJ40311 heat shock transcription factor family member 5 2006-04-25 2016-03-30 2016-10-06 124535 ENSG00000176160 OTTHUMG00000179078 uc002iwi.2 BC033020 XM_064190 CCDS32690 Q4G112 MGI:2685585 RGD:1592448 HSF5 +HGNC:29603 HSFX1 heat shock transcription factor family, X-linked 1 protein-coding gene gene with protein product Approved Xq28 Xq28 LW-1 2006-04-25 2015-10-02 2015-10-02 100506164 ENSG00000171116 OTTHUMG00000022626 uc022cgm.2 NM_016153 CCDS44011 Q9UBD0 15044259 HSFX1 +HGNC:32701 HSFX2 heat shock transcription factor family, X-linked 2 protein-coding gene gene with protein product Approved Xq28 Xq28 2006-04-25 2015-10-02 2015-10-02 100130086 ENSG00000268738 OTTHUMG00000188526 uc022cgk.2 NM_001164415 CCDS48179 Q9UBD0 HSFX2 +HGNC:18568 HSFY1 heat shock transcription factor, Y-linked 1 protein-coding gene gene with protein product Approved Yq11.222 Yq11.222 HSF2L heat shock transcription factor, Y-linked 1 HSFY heat shock transcription factor, Y-linked 2002-05-22 2004-05-26 2004-05-24 2016-10-05 86614 ENSG00000172468 OTTHUMG00000041980 uc004ftr.4 AF332226 NM_152584 "CCDS14790|CCDS35475" Q96LI6 MGI:1918316 HSFY1 400029 +HGNC:1846 HSFY1P1 heat shock transcription factor, Y-linked 1 pseudogene 1 pseudogene pseudogene Approved 22q11.1 22q11.1 "HSFYP1|HSFYL1" CECR8 "cat eye syndrome chromosome region, candidate 8|cat eye syndrome chromosome region, candidate 8 (non-protein coding)" 2000-01-31 2010-08-04 2010-08-04 2016-10-05 27437 ENSG00000229027 OTTHUMG00000143727 AY026053 NR_003607 11381032 PGOHUM00000246384 +HGNC:23950 HSFY2 heat shock transcription factor, Y-linked 2 protein-coding gene gene with protein product Approved Yq11.222 Yq11.222 FLJ25453 2004-05-24 2015-10-02 2016-10-05 159119 ENSG00000169953 OTTHUMG00000041947 uc004ftw.3 AK058182 NM_153716 "CCDS14791|CCDS35476" Q96LI6 12815422 MGI:1918316 RGD:1311885 HSFY2 +HGNC:37119 HSFY3P heat shock transcription factor, Y-linked 3, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2009-07-07 2009-12-16 2009-12-16 2016-10-05 442479 ENSG00000227289 OTTHUMG00000036161 NG_012371 PGOHUM00000233662 +HGNC:37721 HSFY4P heat shock transcription factor, Y-linked 4, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-02-05 2014-11-19 643987 ENSG00000224482 OTTHUMG00000036537 NG_016562 PGOHUM00000233790 +HGNC:38789 HSFY5P heat shock transcription factor, Y-linked 5, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-08-04 2015-10-02 2015-10-02 106478934 ENSG00000232475 OTTHUMG00000043599 NG_043611 PGOHUM00000233808 +HGNC:38790 HSFY6P heat shock transcription factor, Y-linked 6, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-08-04 2015-10-02 2015-10-02 106480722 ENSG00000224169 OTTHUMG00000044993 NG_043585 PGOHUM00000233826 +HGNC:38791 HSFY7P heat shock transcription factor, Y-linked 7, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-08-04 2015-10-02 2015-10-02 106478935 ENSG00000228571 OTTHUMG00000043851 NG_043619 PGOHUM00000234028 +HGNC:38792 HSFY8P heat shock transcription factor, Y-linked 8, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-04 2015-10-02 2015-10-02 106480723 ENSG00000233156 OTTHUMG00000045277 NG_043595 PGOHUM00000234096 +HGNC:24920 HSH2D hematopoietic SH2 domain containing protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "ALX|HSH2|FLJ14886" SH2 domain containing 741 2004-03-31 2016-10-11 84941 ENSG00000196684 OTTHUMG00000182256 uc032hot.2 AK027792 NM_032855 CCDS74304 Q96JZ2 11700021 MGI:2676364 RGD:2321939 HSH2D 608349 +HGNC:5253 HSP90AA1 heat shock protein 90 alpha family class A member 1 protein-coding gene gene with protein product Approved 14q32.31 14q32.31 "Hsp89|Hsp90|FLJ31884|HSP90N" "HSPC1|HSPCA" "heat shock 90kD protein 1, alpha|heat shock 90kDa protein 1, alpha|heat shock protein 90kDa alpha (cytosolic), class A member 1" Heat shock 90kDa proteins 586 1990-06-27 2006-02-24 2016-06-22 2016-10-11 3320 ENSG00000080824 OTTHUMG00000171752 uc001yku.5 M27024 NM_005348 "CCDS9967|CCDS32160" P07900 "2527334|16269234" MGI:96250 RGD:631409 HSP90AA1 140571 +HGNC:5256 HSP90AA2P heat shock protein 90 alpha family class A member 2, pseudogene pseudogene pseudogene Approved 11p14.1 11p14.1 "HSPCA|HSP90ALPHA" "HSPCAL3|HSP90AA2" "heat shock 90kD protein 1, alpha-like 3|heat shock 90kDa protein 1, alpha-like 3|heat shock protein 90kDa alpha (cytosolic), class A member 2|heat shock protein 90kDa alpha (cytosolic), class A member 2, pseudogene" 1991-09-17 2014-10-06 2016-06-22 2016-06-22 3324 ENSG00000224411 OTTHUMG00000166183 NM_001040141 Q14568 "1740332|16269234" 140575 +HGNC:5254 HSP90AA3P heat shock protein 90 alpha family class A member 3, pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 HSPCAL1 "heat shock 90kD protein 1, alpha-like 1|heat shock 90kDa protein 1, alpha-like 1|heat shock protein 90kDa alpha (cytosolic), class A member 3, pseudogene" Heat shock 90kDa proteins 586 1991-09-17 2006-02-24 2016-06-22 2016-06-22 3322 NG_005218 "1740332|16269234" +HGNC:5255 HSP90AA4P heat shock protein 90 alpha family class A member 4, pseudogene pseudogene pseudogene Approved 4q35.2 04q35.2 HSPCAL2 "heat shock 90kD protein 1, alpha-like 2|heat shock 90kDa protein 1, alpha-like 2|heat shock protein 90kDa alpha (cytosolic), class A member 4, pseudogene" 1991-09-17 2006-02-24 2016-06-22 2016-06-22 3323 ENSG00000205100 OTTHUMG00000160204 NG_003014 Q58FG1 "1740332|16269234" +HGNC:32535 HSP90AA5P heat shock protein 90 alpha family class A member 5, pseudogene pseudogene pseudogene Approved 3q27.1 03q27.1 heat shock protein 90kDa alpha (cytosolic), class A member 5, pseudogene 2006-02-24 2016-06-22 2016-06-22 730211 ENSG00000205955 OTTHUMG00000156859 AY956761 NG_005673 Q58FG0 16269234 +HGNC:32536 HSP90AA6P heat shock protein 90 alpha family class A member 6, pseudogene pseudogene pseudogene Approved 4q33 04q33 heat shock protein 90kDa alpha (cytosolic), class A member 6, pseudogene 2006-02-24 2016-06-22 2016-06-22 441051 ENSG00000181359 OTTHUMG00000160882 AY956762 NG_025183 16269234 +HGNC:5258 HSP90AB1 heat shock protein 90 alpha family class B member 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "HSPC2|HSPCB" "heat shock 90kD protein 1, beta|heat shock 90kDa protein 1, beta|heat shock protein 90kDa alpha (cytosolic), class B member 1" Heat shock 90kDa proteins 586 1990-06-27 2006-02-24 2016-06-22 2016-10-05 3326 ENSG00000096384 OTTHUMG00000014761 uc031sor.1 AF275719 NM_007355 CCDS4909 P08238 "2768249|16269234" MGI:96247 RGD:1303075 HSP90AB1 140572 +HGNC:32537 HSP90AB2P heat shock protein 90 alpha family class B member 2, pseudogene pseudogene pseudogene Approved 4p15.33 04p15.33 HSP90BB heat shock protein 90kDa alpha (cytosolic), class B member 2, pseudogene 2006-02-24 2016-06-22 2016-06-22 391634 ENSG00000205940 OTTHUMG00000160089 AY956763 NG_032979 Q58FF8 16269234 HSP90AB2P PGOHUM00000250761 +HGNC:5259 HSP90AB3P heat shock protein 90 alpha family class B member 3, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 HSPCP1 "heat shock 90kD protein 1, beta pseudogene 1|heat shock 90kDa protein 1, beta pseudogene 1|heat shock protein 90kDa alpha (cytosolic), class B member 3, pseudogene" 1996-03-14 2006-02-24 2016-06-22 2016-06-22 3327 ENSG00000183199 OTTHUMG00000160981 AY956764 NG_003015 Q58FF7 "8288256|16269234" +HGNC:32538 HSP90AB4P heat shock protein 90 alpha family class B member 4, pseudogene pseudogene pseudogene Approved 15q21.3 15q21.3 heat shock protein 90kDa alpha (cytosolic), class B member 4, pseudogene 2006-02-24 2016-06-22 2016-06-22 664618 ENSG00000282100 OTTHUMG00000191302 AY956765 NR_002927 Q58FF6 16269234 PGOHUM00000258861 +HGNC:32539 HSP90AB5P heat shock protein 90 alpha family class B member 5, pseudogene pseudogene pseudogene Approved 3p13-p12.3 03p13-p12.3 heat shock protein 90kDa alpha (cytosolic), class B member 5, pseudogene 2006-02-24 2016-06-22 2016-06-22 442083 AY956766 NG_005680 16269234 +HGNC:32540 HSP90AB6P heat shock protein 90 alpha family class B member 6, pseudogene pseudogene pseudogene Approved 13q32.1 13q32.1 heat shock protein 90kDa alpha (cytosolic), class B member 6, pseudogene 2006-02-24 2016-06-22 2016-06-22 541611 ENSG00000235137 OTTHUMG00000017233 AY956767 NG_005682 16269234 HSP90AB6P PGOHUM00000248469 +HGNC:44701 HSP90AB7P heat shock protein 90 alpha family class B member 7, pseudogene pseudogene pseudogene Approved 10p14 10p14 heat shock protein 90kDa alpha (cytosolic), class B member 7, pseudogene 2012-12-05 2016-06-22 2016-06-22 644495 ENSG00000235838 OTTHUMG00000017653 NG_022139 PGOHUM00000238347 +HGNC:12028 HSP90B1 heat shock protein 90 beta family member 1 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "GP96|GRP94" endoplasmin TRA1 "tumor rejection antigen (gp96) 1|heat shock protein 90kDa beta (Grp94), member 1" Heat shock 90kDa proteins 586 1991-07-03 2006-02-24 2016-06-22 2016-10-11 7184 ENSG00000166598 OTTHUMG00000170118 uc001tkb.3 AY040226 NM_003299 CCDS9094 P14625 16269234 MGI:98817 RGD:1310482 HSP90B1 191175 +HGNC:12099 HSP90B2P heat shock protein 90 beta family member 2, pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 "GRP94P1|GRP94b" "TRAP1|TRA1P1|HSPCP2" "tumor rejection antigen (gp96) pseudogene 1|tumor rejection antigen (gp96) 1 pseudogene 1|heat shock protein 90kDa beta (Grp94), member 2, pseudogene" 1991-07-10 2006-02-24 2016-06-22 2016-10-11 7190 ENSG00000259706 OTTHUMG00000171904 AY956768 NR_073383 Q58FF3 16269234 +HGNC:12100 HSP90B3P heat shock protein 90 beta family member 3, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 GRP94c "TRAP2|TRA1P2" "tumor rejection antigen (gp96) pseudogene 2|tumor rejection antigen (gp96) 1 pseudogene 2|heat shock protein 90kDa beta (Grp94), member 3, pseudogene" 1991-07-24 2006-02-24 2016-06-22 2016-10-05 343477 ENSG00000203914 OTTHUMG00000010095 AY956769 XR_000203 16269234 +HGNC:5232 HSPA1A heat shock protein family A (Hsp70) member 1A protein-coding gene gene with protein product Approved 6p21.33 06p21.33 HSP70-1 HSPA1 "heat shock 70kD protein 1A|heat shock 70kDa protein 1A" Heat shock 70kDa proteins 583 2001-06-22 2015-11-19 2016-10-05 3303 ENSG00000204389 OTTHUMG00000031201 uc003nxj.4 BC002453 NM_005345 CCDS34414 P0DMV8 MGI:96244 RGD:1593284 HSPA1A 140550 objectId:2539 +HGNC:5233 HSPA1B heat shock protein family A (Hsp70) member 1B protein-coding gene gene with protein product Approved 6p21.33 06p21.33 HSP70-2 "heat shock 70kD protein 1B|heat shock 70kDa protein 1B" Heat shock 70kDa proteins 583 1995-08-11 2015-11-19 2016-10-05 3304 ENSG00000204388 OTTHUMG00000031202 uc003nxk.3 NM_005346 CCDS34415 P0DMV9 1700760 MGI:99517 RGD:2840 HSPA1B 603012 objectId:2540 +HGNC:5234 HSPA1L heat shock protein family A (Hsp70) member 1 like protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "HSP70-HOM|hum70t" "heat shock 70kD protein-like 1|heat shock 70kDa protein 1-like" Heat shock 70kDa proteins 583 1989-05-12 2015-11-19 2016-10-05 3305 ENSG00000204390 OTTHUMG00000031208 uc003nxh.4 D85730 NM_005527 CCDS34413 P34931 "9685725|9349405" MGI:96231 RGD:1595925 HSPA1L 140559 +HGNC:5235 HSPA2 heat shock protein family A (Hsp70) member 2 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "heat shock 70kD protein 2|heat shock 70kDa protein 2" Heat shock 70kDa proteins 583 2001-06-22 2015-11-19 2016-10-05 3306 ENSG00000126803 OTTHUMG00000141311 uc001xhj.4 "L26336|BC001752" NM_021979 CCDS9766 P54652 MGI:96243 RGD:620664 HSPA2 140560 objectId:2541 +HGNC:5236 HSPA3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:5237 HSPA4 heat shock protein family A (Hsp70) member 4 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "HS24/P52|HSPH2" hsp70 RY "heat shock 70kD protein 4|heat shock 70kDa protein 4" Heat shock 70kDa proteins 583 1991-07-26 2015-11-19 2015-11-19 3308 ENSG00000170606 OTTHUMG00000129012 uc003kyj.4 AB023420 "NM_002154|NM_198431" CCDS4166 P34932 8335910 MGI:1342292 RGD:628878 HSPA4 601113 +HGNC:17041 HSPA4L heat shock protein family A (Hsp70) member 4 like protein-coding gene gene with protein product Approved 4q28.1 04q28.1 "APG-1|Osp94|HSPH3" heat shock 70kDa protein 4-like Heat shock 70kDa proteins 583 2004-11-26 2015-11-19 2016-10-05 22824 ENSG00000164070 OTTHUMG00000133302 uc003ifm.4 AB023421 NM_014278 "CCDS3734|CCDS82953" O95757 10524232 MGI:107422 RGD:1306528 HSPA4L +HGNC:5238 HSPA5 heat shock protein family A (Hsp70) member 5 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 BiP glucose-regulated protein, 78kDa GRP78 "heat shock 70kD protein 5 (glucose-regulated protein, 78kD)|heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)" Heat shock 70kDa proteins 583 1991-07-26 2015-11-19 2015-11-19 3309 ENSG00000044574 OTTHUMG00000020672 uc004bpn.4 NM_005347 CCDS6863 P11021 MGI:95835 RGD:2843 HSPA5 138120 +HGNC:5239 HSPA6 heat shock protein family A (Hsp70) member 6 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 HSP70B' "heat shock 70kD protein 6 (HSP70B')|heat shock 70kDa protein 6 (HSP70B')" Heat shock 70kDa proteins 583 1991-07-26 2015-11-19 2015-11-19 3310 ENSG00000173110 OTTHUMG00000034461 uc001gaq.4 NM_002155 CCDS1231 P17066 1346391 HSPA6 140555 objectId:2542 +HGNC:5240 HSPA7 heat shock protein family A (Hsp70) member 7 pseudogene pseudogene Approved 1q23.3 01q23.3 HSP70B "heat shock 70kD protein 7 (HSP70B)|heat shock 70kDa protein 7 (HSP70B)" Heat shock 70kDa proteins 583 1991-07-26 2015-11-19 2015-11-19 3311 ENSG00000225217 OTTHUMG00000074098 NR_024151 P48741 "1346391|11072087" 140556 PGOHUM00000245047 +HGNC:5241 HSPA8 heat shock protein family A (Hsp70) member 8 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 "HSC71|HSC70|HSP73" HSPA10 "heat shock 70kD protein 8|heat shock 70kDa protein 8" Heat shock 70kDa proteins 583 1995-05-08 2015-11-19 2015-11-19 3312 ENSG00000109971 OTTHUMG00000166030 uc001pyo.5 Y00371 NM_006597 "CCDS8440|CCDS44754" P11142 "8530083|3037489" MGI:105384 RGD:621725 HSPA8 600816 objectId:2543 +HGNC:5245 HSPA8P1 heat shock protein family A (Hsp70) member 8 pseudogene 1 pseudogene pseudogene Approved Xq24 Xq24 HSPAP1 "heat shock 70kD protein pseudogene 1|heat shock 70kDa protein pseudogene 1|heat shock 70kDa protein 8 pseudogene 1" 2001-06-22 2010-02-04 2015-11-19 2015-11-19 3314 ENSG00000234176 OTTHUMG00000022322 M12119 NG_001144 3001086 PGOHUM00000241524 +HGNC:39806 HSPA8P2 heat shock protein family A (Hsp70) member 8 pseudogene 2 pseudogene pseudogene Approved 13q31.3 13q31.3 heat shock 70kDa protein 8 pseudogene 2 2011-03-29 2015-11-19 2015-11-19 100420133 NG_024873 PGOHUM00000248459 +HGNC:44918 HSPA8P3 heat shock protein family A (Hsp70) member 8 pseudogene 3 pseudogene pseudogene Approved 10p12.1 10p12.1 heat shock 70kDa protein 8 pseudogene 3 2012-12-19 2015-11-19 2015-11-19 100420143 ENSG00000234788 OTTHUMG00000017846 NG_025479 PGOHUM00000257785 +HGNC:44919 HSPA8P4 heat shock protein family A (Hsp70) member 8 pseudogene 4 pseudogene pseudogene Approved 5q23.3 05q23.3 heat shock 70kDa protein 8 pseudogene 4 2012-12-19 2015-11-19 2015-11-19 100420028 ENSG00000248610 OTTHUMG00000163044 NG_024717 PGOHUM00000235751 +HGNC:44920 HSPA8P5 heat shock protein family A (Hsp70) member 8 pseudogene 5 pseudogene pseudogene Approved 12p13.32 12p13.32 heat shock 70kDa protein 8 pseudogene 5 2012-12-19 2015-11-19 2015-11-19 399988 ENSG00000256356 OTTHUMG00000168122 NG_021701 PGOHUM00000239629 +HGNC:44921 HSPA8P6 heat shock protein family A (Hsp70) member 8 pseudogene 6 pseudogene pseudogene Approved 2q34 02q34 heat shock 70kDa protein 8 pseudogene 6 2012-12-19 2015-11-19 2015-11-19 130195 ENSG00000235864 OTTHUMG00000154705 NG_021552 PGOHUM00000240513 +HGNC:44922 HSPA8P7 heat shock protein family A (Hsp70) member 8 pseudogene 7 pseudogene pseudogene Approved Xq23 Xq23 heat shock 70kDa protein 8 pseudogene 7 2012-12-19 2015-11-19 2015-11-19 100420080 ENSG00000224773 OTTHUMG00000022224 NG_026750 PGOHUM00000241502 +HGNC:44923 HSPA8P8 heat shock protein family A (Hsp70) member 8 pseudogene 8 pseudogene pseudogene Approved 7p21.3 07p21.3 heat shock 70kDa protein 8 pseudogene 8 2012-12-19 2015-11-19 2015-11-19 100287551 ENSG00000229091 OTTHUMG00000151920 NG_005513 PGOHUM00000233127 +HGNC:44924 HSPA8P9 heat shock protein family A (Hsp70) member 8 pseudogene 9 pseudogene pseudogene Approved 3q22.3 03q22.3 heat shock 70kDa protein 8 pseudogene 9 2012-12-19 2015-11-19 2015-11-19 402143 ENSG00000241478 OTTHUMG00000159761 NG_022275 PGOHUM00000238209 +HGNC:44925 HSPA8P10 heat shock protein family A (Hsp70) member 8 pseudogene 10 pseudogene pseudogene Approved 2q37.2 02q37.2 heat shock 70kDa protein 8 pseudogene 10 2012-12-19 2015-11-19 2015-11-19 100420004 NG_023674 PGOHUM00000240564 +HGNC:44926 HSPA8P11 heat shock protein family A (Hsp70) member 8 pseudogene 11 pseudogene pseudogene Approved 8p12 08p12 heat shock 70kDa protein 8 pseudogene 11 2012-12-19 2015-11-19 2015-11-19 392209 ENSG00000248159 OTTHUMG00000160402 NG_022415 PGOHUM00000249608 +HGNC:44927 HSPA8P12 heat shock protein family A (Hsp70) member 8 pseudogene 12 pseudogene pseudogene Approved 4q35.2 04q35.2 heat shock 70kDa protein 8 pseudogene 12 2012-12-19 2015-11-19 2015-11-19 100420038 NG_025278 PGOHUM00000259963 +HGNC:44928 HSPA8P13 heat shock protein family A (Hsp70) member 8 pseudogene 13 pseudogene pseudogene Approved 8q11.1 08q11.1 heat shock 70kDa protein 8 pseudogene 13 2012-12-19 2015-11-19 2015-11-19 106480803 ENSG00000253425 OTTHUMG00000164121 NG_044191 PGOHUM00000249645 +HGNC:44929 HSPA8P14 heat shock protein family A (Hsp70) member 8 pseudogene 14 pseudogene pseudogene Approved 12q24.12 12q24.12 heat shock 70kDa protein 8 pseudogene 14 2012-12-19 2015-11-19 2015-11-19 642580 ENSG00000257539 OTTHUMG00000169549 NG_02877 PGOHUM00000257951 +HGNC:44930 HSPA8P15 heat shock protein family A (Hsp70) member 8 pseudogene 15 pseudogene pseudogene Approved 6q25.1 06q25.1 heat shock 70kDa protein 8 pseudogene 15 2012-12-19 2015-11-19 2015-11-19 100420051 ENSG00000219395 OTTHUMG00000015835 NG_025882 PGOHUM00000258210 +HGNC:44931 HSPA8P16 heat shock protein family A (Hsp70) member 8 pseudogene 16 pseudogene pseudogene Approved 7q21.11 07q21.11 heat shock 70kDa protein 8 pseudogene 16 2012-12-19 2015-11-19 2015-11-19 100289643 ENSG00000224059 OTTHUMG00000154604 NG_022569 PGOHUM00000258295 +HGNC:44932 HSPA8P17 heat shock protein family A (Hsp70) member 8 pseudogene 17 pseudogene pseudogene Approved 9p21.1 09p21.1 heat shock 70kDa protein 8 pseudogene 17 2012-12-19 2015-11-19 2015-11-19 100533658 ENSG00000228557 OTTHUMG00000019733 NG_028723 PGOHUM00000258387 +HGNC:44933 HSPA8P18 heat shock protein family A (Hsp70) member 8 pseudogene 18 pseudogene pseudogene Approved 3p24.3 03p24.3 heat shock 70kDa protein 8 pseudogene 18 2012-12-19 2015-11-19 2015-11-19 402125 ENSG00000232953 OTTHUMG00000150506 NG_032789 PGOHUM00000258150 +HGNC:44935 HSPA8P19 heat shock protein family A (Hsp70) member pseudogene 19 pseudogene pseudogene Approved 3q22.1 03q22.1 heat shock 70kDa protein 8 pseudogene 19 2012-12-19 2015-11-19 2015-11-19 100420049 ENSG00000251614 OTTHUMG00000159927 NG_025743 PGOHUM00000258162 +HGNC:44936 HSPA8P20 heat shock protein family A (Hsp70) member 8 pseudogene 20 pseudogene pseudogene Approved Xq25 Xq25 heat shock 70kDa protein 8 pseudogene 20 2012-12-19 2015-11-19 2015-11-19 100129231 ENSG00000234564 OTTHUMG00000022341 NG_023274 PGOHUM00000241529 +HGNC:5244 HSPA9 heat shock protein family A (Hsp70) member 9 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "GRP75|PBP74|mot-2|mthsp75" mortalin2 HSPA9B "heat shock 70kDa protein 9B (mortalin-2)|heat shock 70kDa protein 9 (mortalin)" Heat shock 70kDa proteins 583 1997-09-12 2006-10-31 2015-11-19 2016-10-05 3313 ENSG00000113013 OTTHUMG00000129206 uc003ldf.4 L11066 NM_004134 CCDS4208 P38646 7684501 MGI:96245 RGD:1311806 HSPA9 600548 451821 +HGNC:5243 HSPA9A entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-10-31 +HGNC:24915 HSPA9P1 heat shock protein family A (Hsp70) member 9 pseudogene 1 pseudogene pseudogene Approved 2q36.1 02q36.1 "HSPA9BP|HSPA9P" "heat shock 70kDa protein 9B pseudogene|heat shock 70kDa protein 9 pseudogene|heat shock 70kDa protein 9 pseudogene 1" 2004-03-26 2010-01-08 2015-11-19 2016-10-05 266724 ENSG00000226666 OTTHUMG00000153407 NG_002380 9847074 +HGNC:31733 HSPA9P2 heat shock protein family A (Hsp70) member 9 pseudogene 2 pseudogene pseudogene Approved 18q12.1 18q12.1 heat shock 70kDa protein 9 pseudogene 2 2010-06-17 2015-11-19 2015-11-19 100873903 NG_032192 PGOHUM00000234911 +HGNC:19022 HSPA12A heat shock protein family A (Hsp70) member 12A protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "FLJ13874|KIAA0417" "heat shock 70kD protein 12A|heat shock 70kDa protein 12A" Heat shock 70kDa proteins 583 2002-08-06 2015-11-19 2015-11-19 259217 ENSG00000165868 OTTHUMG00000019107 uc001lct.3 AB007877 NM_025015 "CCDS41569|CCDS81511" O43301 12552099 MGI:1920692 RGD:1305531 HSPA12A 610701 +HGNC:16193 HSPA12B heat shock protein family A (Hsp70) member 12B protein-coding gene gene with protein product Approved 20p13 20p13 dJ1009E24.2 C20orf60 "chromosome 20 open reading frame 60|heat shock 70kD protein 12B" Heat shock 70kDa proteins 583 2001-07-17 2003-04-10 2015-11-19 2015-11-19 116835 ENSG00000132622 OTTHUMG00000031755 uc002wjd.4 AK056712 NM_052970 "CCDS13061|CCDS82596" Q96MM6 12552099 MGI:1919880 RGD:1312004 HSPA12B 610702 +HGNC:11375 HSPA13 heat shock protein family A (Hsp70) member 13 protein-coding gene gene with protein product Approved 21q11.2 21q11.2 STCH "stress 70 protein chaperone, microsome-associated, 60kD|stress 70 protein chaperone, microsome-associated, 60kDa|heat shock protein 70kDa family, member 13" Heat shock 70kDa proteins 583 1997-03-21 2008-06-17 2015-11-19 2016-10-05 6782 ENSG00000155304 OTTHUMG00000074261 uc002yjt.4 NM_006948 CCDS13567 P48723 8825657 MGI:1309463 RGD:3775 HSPA13 601100 +HGNC:29526 HSPA14 heat shock protein family A (Hsp70) member 14 protein-coding gene gene with protein product Approved 10p13 10p13 "HSP70-4|HSP70L1" heat shock 70kDa protein 14 Heat shock 70kDa proteins 583 2004-04-20 2015-11-19 2015-11-19 51182 ENSG00000187522 OTTHUMG00000017712 uc001inf.5 AF112210 NM_016299 "CCDS7103|CCDS60487" Q0VDF9 12477932 MGI:1354164 RGD:1303296 HSPA14 610369 +HGNC:5246 HSPB1 heat shock protein family B (small) member 1 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "HSP27|HSP28|Hs.76067|Hsp25|CMT2F" "heat shock 27kD protein 1|heat shock 27kDa protein 1" Small heat shock proteins 585 1991-07-09 2015-11-19 2016-10-12 3315 ENSG00000106211 OTTHUMG00000023228 uc003uew.4 X54079 NM_001540 CCDS5583 P04792 "2243808|9344682" MGI:96240 RGD:61306 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_248|http://www.lrg-sequence.org/LRG/LRG_248" HSPB1 602195 122526 +HGNC:5251 HSPB1P1 heat shock protein family B (small) member 1 pseudogene 1 pseudogene pseudogene Approved 9q21.13 09q21.13 HSPBL2 "heat shock 27kD protein-like 2|heat shock 27kDa protein-like 2|heat shock 27kDa protein-like 2 pseudogene|heat shock 27kDa protein 1 pseudogene 1" 1989-05-23 2010-10-19 2015-11-19 2015-11-19 653553 ENSG00000236060 OTTHUMG00000153719 NG_013115 "2538929|12838549" PGOHUM00000236206 +HGNC:5252 HSPB1P2 heat shock protein family B (small) member 1 pseudogene 2 pseudogene pseudogene Approved Xp11.23 Xp11.23 heat shock 27kDa protein 1 (HSPB1) pseudogene HSPBL3 "heat shock 27kD protein-like 3|heat shock 27kDa protein-like 3|heat shock 27kDa protein-like 3 pseudogene|heat shock 27kDa protein 1 pseudogene 2" 1989-05-23 2010-10-19 2015-11-19 2015-11-19 653364 ENSG00000230216 OTTHUMG00000024140 NG_008236 2538929 PGOHUM00000241290 +HGNC:5247 HSPB2 heat shock protein family B (small) member 2 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "Hs.78846|MKBP" "heat shock 27kD protein 2|heat shock 27kDa protein 2" Small heat shock proteins 585 1997-12-23 2015-11-19 2015-11-19 3316 ENSG00000170276 OTTHUMG00000166886 uc001pmg.3 U75898 NM_001541 CCDS8352 Q16082 "9344664|9490724" MGI:1916503 RGD:70914 HSPB2 602179 +HGNC:41996 HSPB2-C11orf52 HSPB2-C11orf52 readthrough (NMD candidate) other readthrough Approved 11q23.1 11q23.1 2011-05-31 2013-05-09 2014-11-18 100528019 ENSG00000254445 OTTHUMG00000166887 uc058hgl.1 NR_037651.1 +HGNC:5248 HSPB3 heat shock protein family B (small) member 3 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 HSPL27 "heat shock 27kD protein 3|heat shock 27kDa protein 3" Small heat shock proteins 585 1999-01-15 2015-11-19 2015-11-19 8988 ENSG00000169271 OTTHUMG00000096995 uc003jph.2 Y17782 NM_006308 CCDS3961 Q12988 "8972725|9858786" MGI:1928479 RGD:68345 HSPB3 604624 227387 +HGNC:26511 HSPB6 heat shock protein family B (small) member 6 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "FLJ32389|Hsp20|PPP1R91" protein phosphatase 1, regulatory subunit 91 heat shock protein, alpha-crystallin-related, B6 "Small heat shock proteins|Protein phosphatase 1 regulatory subunits" "585|694" 2004-05-12 2015-11-25 2016-10-05 126393 ENSG00000004776 OTTHUMG00000048122 uc060xio.1 AJ278121 NM_144617 CCDS12475 O14558 "12820654|14717697" MGI:2685325 RGD:621554 HSPB6 610695 +HGNC:5249 HSPB7 heat shock protein family B (small) member 7 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 cvHSP "heat shock 27kD protein family, member 7 (cardiovascular)|heat shock 27kDa protein family, member 7 (cardiovascular)" Small heat shock proteins 585 2000-01-26 2015-11-19 2015-11-23 27129 ENSG00000173641 OTTHUMG00000009531 uc001axo.2 AF155908 NM_014424 CCDS30611 Q9UBY9 10593960 MGI:1352494 RGD:62021 HSPB7 610692 +HGNC:30171 HSPB8 heat shock protein family B (small) member 8 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "H11|E2IG1|HSP22|HspB8|CMT2L" "heat shock 27kDa protein 8|heat shock 22kDa protein 8" Small heat shock proteins 585 2004-01-29 2015-11-19 2016-10-12 26353 ENSG00000152137 OTTHUMG00000168932 uc001txb.4 AF191017 NM_014365 CCDS9189 Q9UJY1 "10833516|11085516" MGI:2135756 RGD:71003 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_249|http://www.lrg-sequence.org/LRG/LRG_249" HSPB8 608014 122532 +HGNC:30589 HSPB9 heat shock protein family B (small) member 9 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 CT51 cancer/testis antigen 51 heat shock protein, alpha-crystallin-related, B9 Small heat shock proteins 585 2004-05-12 2015-11-19 2015-11-19 94086 ENSG00000260325 OTTHUMG00000133500 uc002hyy.3 AJ302068 NM_033194 CCDS11418 Q9BQS6 "11470154|12820654" MGI:1922732 RGD:1309122 HSPB9 608344 +HGNC:25019 HSPB11 heat shock protein family B (small) member 11 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "HSPCO34|PP25|IFT25" intraflagellar transport 25 homolog (Chlamydomonas) C1orf41 "chromosome 1 open reading frame 41|heat shock protein family B (small), member 11" "Small heat shock proteins|Intraflagellar transport proteins" "585|615" 2004-06-24 2008-06-24 2015-11-19 2016-10-05 51668 ENSG00000081870 OTTHUMG00000008408 uc001cwh.4 AF100747 NM_016126 CCDS41341 Q9Y547 "11042152|19253336" MGI:1920188 RGD:1596413 HSPB11 +HGNC:16389 HSPBAP1 HSPB1 associated protein 1 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "FLJ22623|PASS1" HSPB (heat shock 27kDa) associated protein 1 2001-08-28 2016-01-26 2016-01-26 79663 ENSG00000169087 OTTHUMG00000159550 uc003efu.3 AF400663 NM_024610 CCDS3017 Q96EW2 11978969 MGI:1913917 RGD:620870 HSPBAP1 608263 122538 +HGNC:5250 HSPBL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-10-19 +HGNC:24989 HSPBP1 HSPA (Hsp70) binding protein 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "HspBP1|FES1" hsp70 interacting protein HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1 2008-12-04 2016-06-21 2016-06-21 23640 ENSG00000133265 OTTHUMG00000180705 uc002qkd.4 NM_012267 CCDS33111 Q9NZL4 "10786638|9830037" MGI:1913495 RGD:628677 HSPBP1 612939 +HGNC:5261 HSPD1 heat shock protein family D (Hsp60) member 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "GroEL|HSP60" SPG13 "heat shock 60kD protein 1 (chaperonin)|spastic paraplegia 13 (autosomal dominant)|heat shock 60kDa protein 1 (chaperonin)" Chaperonins 587 1991-07-19 2015-11-19 2015-11-19 3329 ENSG00000144381 OTTHUMG00000154463 uc002uuk.4 M34664 NM_002156 CCDS33357 P10809 "1980192|11898127" MGI:96242 RGD:621314 HSPD1 118190 122542 +HGNC:35133 HSPD1P1 heat shock protein family D (Hsp60) member 1 pseudogene 1 pseudogene pseudogene Approved 5p14.3 05p14.3 HSPD1-2P heat shock 60kDa protein 1 (chaperonin) pseudogene 1 2008-09-22 2015-11-19 2015-11-19 643300 ENSG00000213430 OTTHUMG00000161914 NG_008757 PGOHUM00000235528 +HGNC:5263 HSPD1P2 heat shock protein family D (Hsp60) member 1 pseudogene 2 pseudogene pseudogene Approved 8p23.1 08p23.1 "HSP60P2|HSPD-9P" HSPDP2 "heat shock 60kD protein 1 (chaperonin) pseudogene 2|heat shock 60kDa protein 1 (chaperonin) pseudogene 2" 1991-07-19 2008-09-22 2015-11-19 2015-11-19 645808 ENSG00000254543 OTTHUMG00000165400 M34662 NG_001146 1980192 PGOHUM00000249219 +HGNC:5264 HSPD1P3 heat shock protein family D (Hsp60) member 1 pseudogene 3 pseudogene pseudogene Approved 8p23.1 08p23.1 "HSP60P3|HSP60P1|HSP60P4|HSPD1-7P" "HSPDP3|HSPDP1|HSPDP4" "heat shock 60kD protein 1 (chaperonin) pseudogene 3|heat shock 60kDa protein 1 (chaperonin) pseudogene 1|heat shock 60kD protein 1 (chaperonin) pseudogene 1|heat shock 60kDa protein 1 (chaperonin) pseudogene 4|heat shock 60kD protein 1 (chaperonin) pseudogene 4|heat shock 60kDa protein 1 (chaperonin) pseudogene 3" 1991-07-19 2008-09-22 2015-11-19 2015-11-19 3332 ENSG00000255128 OTTHUMG00000165385 M34661 NG_001145 1980192 PGOHUM00000249546 +HGNC:35146 HSPD1P4 heat shock protein family D (Hsp60) member 1 pseudogene 4 pseudogene pseudogene Approved 12q13.3 12q13.3 HSPD1-5P heat shock 60kDa protein 1 (chaperonin) pseudogene 4 2008-09-22 2015-11-19 2016-10-11 644745 ENSG00000257576 OTTHUMG00000170572 NG_008756 PGOHUM00000239809 +HGNC:5266 HSPD1P5 heat shock protein family D (Hsp60) member 1 pseudogene 5 pseudogene pseudogene Approved 4q31.21 04q31.21 HSPD1-8P HSPDP5 "heat shock 60kD protein 1 (chaperonin) pseudogene 5|heat shock 60kDa protein 1 (chaperonin) pseudogene 5" 1991-07-19 2008-09-22 2015-11-19 2015-11-19 345041 ENSG00000249193 OTTHUMG00000161476 XR_017561 PGOHUM00000246095 +HGNC:5267 HSPD1P6 heat shock protein family D (Hsp60) member 1 pseudogene 6 pseudogene pseudogene Approved 3p22.2 03p22.2 HSPD1-6P HSPDP6 "heat shock 60kD protein 1 (chaperonin) pseudogene 6|heat shock 60kDa protein 1 (chaperonin) pseudogene 6" 1991-07-19 2008-09-22 2015-11-19 2016-10-05 645548 ENSG00000230067 OTTHUMG00000155803 XR_017400 PGOHUM00000237584 +HGNC:5268 HSPD1P7 heat shock protein family D (Hsp60) member 1 pseudogene 7 pseudogene pseudogene Approved 21q21.3 21q21.3 HSPD1-22P HSPDP7 "heat shock 60kD protein 1 (chaperonin) pseudogene 7|heat shock 60kDa protein 1 (chaperonin) pseudogene 7" 2000-05-23 2008-09-22 2015-11-19 2015-11-19 54047 ENSG00000215005 OTTHUMG00000078751 NG_000920 +HGNC:35145 HSPD1P8 heat shock protein family D (Hsp60) member 1 pseudogene 8 pseudogene pseudogene Approved 13q31.1 13q31.1 HSPD1-12P heat shock 60kDa protein 1 (chaperonin) pseudogene 8 2008-09-22 2015-11-19 2015-11-19 647298 ENSG00000215357 OTTHUMG00000017123 NG_011337 PGOHUM00000248642 +HGNC:35132 HSPD1P9 heat shock protein family D (Hsp60) member 1 pseudogene 9 pseudogene pseudogene Approved 13q13.3 13q13.3 HSPD1-14P heat shock 60kDa protein 1 (chaperonin) pseudogene 9 2008-09-22 2015-11-19 2015-11-19 646910 ENSG00000228036 OTTHUMG00000016753 NG_016588 PGOHUM00000248368 +HGNC:35131 HSPD1P10 heat shock protein family D (Hsp60) member 1 pseudogene 10 pseudogene pseudogene Approved 6q14.3-q15 06q14.3-q15 HSPD1-4P heat shock 60kDa protein 1 (chaperonin) pseudogene 10 2008-09-22 2015-11-19 2016-10-11 644016 ENSG00000216990 OTTHUMG00000015167 NG_021117 PGOHUM00000243700 +HGNC:35142 HSPD1P11 heat shock protein family D (Hsp60) member 1 pseudogene 11 pseudogene pseudogene Approved 5q15 05q15 heat shock 60kDa protein 1 (chaperonin) pseudogene 11 2008-09-22 2015-11-19 2015-11-19 100359396 ENSG00000251348 OTTHUMG00000162737 NG_016480 PGOHUM00000235700 +HGNC:35140 HSPD1P12 heat shock protein family D (Hsp60) member 1 pseudogene 12 pseudogene pseudogene Approved 12p13.31 12p13.31 HSPD1-10P heat shock 60kDa protein 1 (chaperonin) pseudogene 12 2008-09-22 2015-11-19 2016-10-11 283320 ENSG00000255964 OTTHUMG00000168524 NG_003217 PGOHUM00000239642 +HGNC:35138 HSPD1P13 heat shock protein family D (Hsp60) member 1 pseudogene 13 pseudogene pseudogene Approved 11q22.3 11q22.3 HSPD1-16P heat shock 60kDa protein 1 (chaperonin) pseudogene 13 2008-09-22 2015-11-19 2015-11-19 100462987 NG_023061 PGOHUM00000242884 +HGNC:35143 HSPD1P14 heat shock protein family D (Hsp60) member 1 pseudogene 14 pseudogene pseudogene Approved 1p35.1 01p35.1 HSPD1-17P heat shock 60kDa protein 1 (chaperonin) pseudogene 14 2008-09-22 2015-11-19 2015-11-19 100287140 ENSG00000227000 OTTHUMG00000057513 NG_022774 PGOHUM00000244665 +HGNC:35130 HSPD1P15 heat shock protein family D (Hsp60) member 1 pseudogene 15 pseudogene pseudogene Approved 5p14.3 05p14.3 HSPD1-15P heat shock 60kDa protein 1 (chaperonin) pseudogene 15 2008-09-22 2015-11-19 2015-11-19 646273 ENSG00000249557 OTTHUMG00000161809 NG_016584 PGOHUM00000235525 +HGNC:35128 HSPD1P16 heat shock protein family D (Hsp60) member 1 pseudogene 16 pseudogene pseudogene Approved 6q25.2 06q25.2 HSPD1-13P heat shock 60kDa protein 1 (chaperonin) pseudogene 16 2008-09-22 2015-11-19 2015-11-19 100462985 ENSG00000218792 OTTHUMG00000015849 NG_023060 PGOHUM00000243824 +HGNC:35147 HSPD1P17 heat shock protein family D (Hsp60) member 1 pseudogene 17 pseudogene pseudogene Approved 10q11.23 10q11.23 HSPD1-19P heat shock 60kDa protein 1 (chaperonin) pseudogene 17 2008-09-22 2015-11-19 2015-11-19 100462986 NG_023064 +HGNC:35136 HSPD1P18 heat shock protein family D (Hsp60) member 1 pseudogene 18 pseudogene pseudogene Approved 5q31.1 05q31.1 heat shock 60kDa protein 1 (chaperonin) pseudogene 18 2008-09-22 2015-11-19 2015-11-19 100359397 ENSG00000248351 OTTHUMG00000163218 NG_016481 PGOHUM00000235404 +HGNC:38590 HSPD1P19 heat shock protein family D (Hsp60) member 1 pseudogene 19 pseudogene pseudogene Approved 20q13.32 20q13.32 HSPD1-18P heat shock 60kDa protein 1 (chaperonin) pseudogene 19 2010-06-25 2015-11-19 2015-11-19 100463288 NG_023062 PGOHUM00000247682 +HGNC:38591 HSPD1P20 heat shock protein family D (Hsp60) member 1 pseudogene 20 pseudogene pseudogene Approved 12p13.31 12p13.31 HSPD1-20P heat shock 60kDa protein 1 (chaperonin) pseudogene 20 2010-06-25 2015-11-19 2015-11-19 100462989 NG_023065 PGOHUM00000239312 +HGNC:38592 HSPD1P21 heat shock protein family D (Hsp60) member 1 pseudogene 21 pseudogene pseudogene Approved 20q13.12 20q13.12 HSPD1-3P heat shock 60kDa protein 1 (chaperonin) pseudogene 21 2010-06-25 2015-11-19 2015-11-19 100462990 ENSG00000229900 OTTHUMG00000032589 NG_023059 PGOHUM00000247546 +HGNC:39502 HSPD1P22 heat shock protein family D (Hsp60) member 1 pseudogene 22 pseudogene pseudogene Approved 5q12.1 05q12.1 HSPD1-21P heat shock 60kDa protein 1 (chaperonin) pseudogene 22 2011-01-31 2015-11-19 2015-11-19 100462984 NG_023066 +HGNC:5269 HSPE1 heat shock protein family E (Hsp10) member 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "CPN10|GroES|HSP10|EPF" "chaperonin 10|early pregnancy factor" "heat shock 10kD protein 1 (chaperonin 10)|heat shock 10kDa protein 1" Chaperonins 587 1994-11-16 2015-11-19 2015-11-19 3336 ENSG00000115541 OTTHUMG00000132749 uc002uul.4 AF109872 NM_002157 CCDS2320 P61604 "7914093|7698325" MGI:104680 RGD:2844 HSPE1 600141 +HGNC:49184 HSPE1-MOB4 HSPE1-MOB4 readthrough other readthrough Approved 2q33.1 02q33.1 2013-09-25 2013-09-25 100529241 ENSG00000270757 OTTHUMG00000184877 NM_001202485 CCDS63079 +HGNC:16530 HSPE1P1 heat shock protein family E (Hsp10) member 1 pseudogene 1 pseudogene pseudogene Approved 20q12 20q12 bA101E14.1 HSPEP1 "heat shock 10kD protein 1 (chaperonin 10) psuedogene 1|heat shock 10kDa protein 1 pseudogene 1" 2001-09-17 2010-01-08 2015-11-19 2015-11-19 140895 ENSG00000234878 OTTHUMG00000032471 NG_001006 PGOHUM00000247533 +HGNC:20052 HSPE1P2 heat shock protein family E (Hsp10) member 1 pseudogene 2 pseudogene pseudogene Approved 14q23.2 14q23.2 HSPEP2 heat shock 10kDa protein 1 pseudogene 2 2003-01-13 2010-01-08 2015-11-19 2015-11-19 326300 ENSG00000258645 OTTHUMG00000171131 NG_002552 PGOHUM00000248199 +HGNC:49322 HSPE1P3 heat shock protein family E (Hsp10) member 1 pseudogene 3 pseudogene pseudogene Approved 15q26.1 15q26.1 heat shock 10kDa protein 1 pseudogene 3 2013-10-17 2015-11-19 2015-11-19 100507046 ENSG00000259746 OTTHUMG00000172336 NG_030236 PGOHUM00000247271 +HGNC:49323 HSPE1P4 heat shock protein family E (Hsp10) member 1 pseudogene 4 pseudogene pseudogene Approved 12q23.2 12q23.2 heat shock 10kDa protein 1 pseudogene 4 2013-10-17 2015-11-19 2015-11-19 100287369 ENSG00000258153 OTTHUMG00000170446 NG_030128 PGOHUM00000239568 +HGNC:49324 HSPE1P5 heat shock protein family E (Hsp10) member 1 pseudogene 5 pseudogene pseudogene Approved 16q22.1 16q22.1 heat shock 10kDa protein 1 pseudogene 5 2013-10-17 2015-11-19 2015-11-19 100506000 ENSG00000261395 OTTHUMG00000176787 NG_030247 PGOHUM00000249160 +HGNC:49325 HSPE1P6 heat shock protein family E (Hsp10) member 1 pseudogene 6 pseudogene pseudogene Approved 1q32.1 01q32.1 heat shock 10kDa protein 1 pseudogene 6 2013-10-17 2015-11-19 2015-11-19 106480254 ENSG00000232917 OTTHUMG00000036052 NG_043911 PGOHUM00000244399 +HGNC:49327 HSPE1P7 heat shock protein family E (Hsp10) member 1 pseudogene 7 pseudogene pseudogene Approved 16q23.1 16q23.1 heat shock 10kDa protein 1 pseudogene 7 2013-10-17 2015-11-19 2015-11-19 100132346 ENSG00000270945 OTTHUMG00000184815 NG_029256 PGOHUM00000259087 +HGNC:49326 HSPE1P8 heat shock protein family E (Hsp10) member 1 pseudogene 8 pseudogene pseudogene Approved 1p34.3 01p34.3 heat shock 10kDa protein 1 pseudogene 8 2013-10-17 2015-11-19 2015-11-19 100292290 ENSG00000217897 OTTHUMG00000008349 NG_029204 PGOHUM00000243974 +HGNC:49328 HSPE1P9 heat shock protein family E (Hsp10) member 1 pseudogene 9 pseudogene pseudogene Approved 2q37.1 02q37.1 heat shock 10kDa protein 1 pseudogene 9 2013-10-17 2015-11-19 2015-11-19 106480255 ENSG00000232690 OTTHUMG00000153155 NG_045108 PGOHUM00000240563 +HGNC:49329 HSPE1P10 heat shock protein family E (Hsp10) member 1 pseudogene 10 pseudogene pseudogene Approved 5q23.2 05q23.2 heat shock 10kDa protein 1 pseudogene 10 2013-10-17 2015-11-19 2015-11-19 100288235 ENSG00000249768 OTTHUMG00000163036 NG_030295 PGOHUM00000260020 +HGNC:49330 HSPE1P11 heat shock protein family E (Hsp10) member 1 pseudogene 11 pseudogene pseudogene Approved 6p21.31 06p21.31 heat shock 10kDa protein 1 pseudogene 11 2013-10-17 2015-11-19 2015-11-19 106481673 ENSG00000187762 OTTHUMG00000014558 NG_045268 PGOHUM00000243603 +HGNC:49331 HSPE1P12 heat shock protein family E (Hsp10) member 1 pseudogene 12 pseudogene pseudogene Approved 12p13.2 12p13.2 heat shock 10kDa protein 1 pseudogene 12 2013-10-17 2015-11-19 2015-11-19 100286954 ENSG00000235930 OTTHUMG00000168489 NG_030131 PGOHUM00000239670 +HGNC:49332 HSPE1P13 heat shock protein family E (Hsp10) member 1 pseudogene 13 pseudogene pseudogene Approved 2p22.1 02p22.1 heat shock 10kDa protein 1 pseudogene 13 2013-10-17 2015-11-19 2015-11-19 106480256 ENSG00000225900 OTTHUMG00000153568 NG_045110 PGOHUM00000259734 +HGNC:49333 HSPE1P14 heat shock protein family E (Hsp10) member 1 pseudogene 14 pseudogene pseudogene Approved 8q22.3 08q22.3 heat shock 10kDa protein 1 pseudogene 14 2013-10-17 2015-11-19 2015-11-19 106481674 ENSG00000271612 OTTHUMG00000184578 NG_042986 PGOHUM00000257214 +HGNC:49335 HSPE1P15 heat shock protein family E (Hsp10) member 1 pseudogene 15 pseudogene pseudogene Approved 5q31.2 05q31.2 heat shock 10kDa protein 1 pseudogene 15 2013-10-18 2015-11-19 2015-11-19 PGOHUM00000235775 +HGNC:49334 HSPE1P16 heat shock protein family E (Hsp10) member 1 pseudogene 16 pseudogene pseudogene Approved 16p12.1 16p12.1 EPF8 heat shock 10kDa protein 1 pseudogene 16 2013-10-17 2015-11-19 2015-11-19 171421 ENSG00000237140 OTTHUMG00000059950 NG_001326 10763410 PGOHUM00000248768 +HGNC:49336 HSPE1P17 heat shock protein family E (Hsp10) member 1 pseudogene 17 pseudogene pseudogene Approved 3q11.1 03q11.1 heat shock 10kDa protein 1 pseudogene 17 2013-10-18 2015-11-19 2015-11-19 PGOHUM00000259831 +HGNC:49337 HSPE1P18 heat shock protein family E (Hsp10) member 1 pseudogene 18 pseudogene pseudogene Approved 11q23.3 11q23.3 heat shock 10kDa protein 1 pseudogene 18 2013-10-18 2015-11-19 2015-11-19 106480257 ENSG00000255163 OTTHUMG00000166995 NG_045639 PGOHUM00000242499 +HGNC:49338 HSPE1P19 heat shock protein family E (Hsp10) member 1 pseudogene 19 pseudogene pseudogene Approved 3p11.1 03p11.1 heat shock 10kDa protein 1 pseudogene 19 2013-10-18 2015-11-19 2015-11-19 106481675 ENSG00000271024 OTTHUMG00000184367 NG_042994 PGOHUM00000237682 +HGNC:49339 HSPE1P20 heat shock protein family E (Hsp10) member 1 pseudogene 20 pseudogene pseudogene Approved 12q24.32 12q24.32 heat shock 10kDa protein 1 pseudogene 20 2013-10-18 2015-11-19 2015-11-19 100288726 ENSG00000257021 OTTHUMG00000168455 NG_030135 PGOHUM00000239956 +HGNC:49340 HSPE1P21 heat shock protein family E (Hsp10) member 1 pseudogene 21 pseudogene pseudogene Approved 6q23.2 06q23.2 heat shock 10kDa protein 1 pseudogene 21 2013-10-18 2015-11-19 2015-11-19 106480258 ENSG00000238059 OTTHUMG00000015603 NG_043934 PGOHUM00000243377 +HGNC:49341 HSPE1P22 heat shock protein family E (Hsp10) member 1 pseudogene 22 pseudogene pseudogene Approved 9q22.31 09q22.31 heat shock 10kDa protein 1 pseudogene 22 2013-10-18 2015-11-19 2015-11-19 100289607 ENSG00000237306 OTTHUMG00000020213 NG_030092 PGOHUM00000236698 +HGNC:49342 HSPE1P23 heat shock protein family E (Hsp10) member 1 pseudogene 23 pseudogene pseudogene Approved 4q13.3 04q13.3 heat shock 10kDa protein 1 pseudogene 23 2013-10-18 2015-11-19 2015-11-19 106481676 ENSG00000250356 OTTHUMG00000160825 NG_043003 PGOHUM00000257091 +HGNC:49343 HSPE1P24 heat shock protein family E (Hsp10) member 1 pseudogene 24 pseudogene pseudogene Approved 1p36.22 01p36.22 heat shock 10kDa protein 1 pseudogene 24 2013-10-18 2015-11-19 2015-11-19 106480259 ENSG00000225158 OTTHUMG00000002034 NG_043941 PGOHUM00000244598 +HGNC:49344 HSPE1P25 heat shock protein family E (Hsp10) member 1 pseudogene 25 pseudogene pseudogene Approved 1p31.1 01p31.1 heat shock 10kDa protein 1 pseudogene 25 2013-10-18 2015-11-19 2015-11-19 106480260 ENSG00000232015 OTTHUMG00000040563 NG_045649 PGOHUM00000244764 +HGNC:49345 HSPE1P26 heat shock protein family E (Hsp10) member 1 pseudogene 26 pseudogene pseudogene Approved 6q25.3 06q25.3 heat shock 10kDa protein 1 pseudogene 26 2013-10-18 2015-11-19 2015-11-19 106481677 ENSG00000220867 OTTHUMG00000015899 NG_045283 PGOHUM00000243838 +HGNC:49346 HSPE1P27 heat shock protein family E (Hsp10) member 1 pseudogene 27 pseudogene pseudogene Approved 1p36.12 01p36.12 heat shock 10kDa protein 1 pseudogene 27 2013-10-18 2015-11-19 2015-11-19 106480261 ENSG00000235112 OTTHUMG00000002776 NG_043956 +HGNC:49347 HSPE1P28 heat shock protein family E (Hsp10) member 1 pseudogene 28 pseudogene pseudogene Approved 9q32 09q32 heat shock 10kDa protein 1 pseudogene 28 2013-10-18 2015-11-19 2015-11-19 171420 ENSG00000230081 OTTHUMG00000020501 NG_001325 +HGNC:5273 HSPG2 heparan sulfate proteoglycan 2 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "perlecan|PRCAN" perlecan proteoglycan SJS1 Schwartz-Jampel syndrome 1 (chondrodystrophic myotonia) "Proteoglycans|I-set domain containing|Immunoglobulin like domain containing" "570|593|594" 1991-02-27 2007-02-16 2007-02-16 2016-10-05 3339 ENSG00000142798 OTTHUMG00000002674 uc001bfj.4 M85289 NM_005529 CCDS30625 P98160 "1685141|11941538" MGI:96257 RGD:621770 HSPG2 142461 122547 +HGNC:16969 HSPH1 heat shock protein family H (Hsp110) member 1 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "HSP105B|KIAA0201|HSP105A|NY-CO-25" heat shock 105kDa/110kDa protein 1 Heat shock 70kDa proteins 583 2003-02-19 2015-11-19 2015-11-19 10808 ENSG00000120694 OTTHUMG00000016685 uc001utj.5 AB003333 XM_011534887 "CCDS9340|CCDS66525|CCDS73559|CCDS66526" Q92598 "9610721|9931472" MGI:105053 RGD:1311609 HSPH1 610703 +HGNC:34233 HSR1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-03-09 +HGNC:16637 HTATIP2 HIV-1 Tat interactive protein 2 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "TIP30|CC3|FLJ26963|SDR44U1" "Tat-interacting protein (30kD)|short chain dehydrogenase/reductase family 44U, member 1" "HIV-1 Tat interactive protein 2, 30 kDa|HIV-1 Tat interactive protein 2, 30kDa" Short chain dehydrogenase/reductase superfamily 743 2001-09-21 2015-11-09 2015-11-09 10553 ENSG00000109854 OTTHUMG00000166015 uc001mpz.3 AF039103 NM_001098521 "CCDS7852|CCDS44553|CCDS53613" Q9BUP3 "9482853|9174052|19027726" MGI:1859271 RGD:1309941 HTATIP2 605628 1.1.1.- +HGNC:5276 HTATSF1 HIV-1 Tat specific factor 1 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 TAT-SF1 HIV TAT specific factor 1 RNA binding motif containing 725 2000-07-25 2006-01-09 2014-11-19 27336 ENSG00000102241 OTTHUMG00000022510 uc004ezw.4 U76992 NM_014500 CCDS14657 O43719 8849451 MGI:1919709 RGD:1563377 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HTATSF1 HTATSF1 300346 +HGNC:13959 HTATSF1P1 HIV-1 Tat specific factor 1 pseudogene 1 pseudogene pseudogene Approved 6p21.32 06p21.32 "TAT-SF1-L|dJ1033B10.6" HTATSF1P "HIV TAT specific factor 1 pseudogene|HIV-1 Tat specific factor 1 pseudogene" 2003-11-26 2010-06-21 2010-06-21 2015-02-09 387039 ENSG00000223457 OTTHUMG00000031101 PGOHUM00000301764 +HGNC:38586 HTATSF1P2 HIV-1 Tat specific factor 1 pseudogene 2 pseudogene pseudogene Approved 6q25.2 06q25.2 2010-06-22 2014-11-18 401233 ENSG00000271361 OTTHUMG00000184550 NG_030001 PGOHUM00000243042 +HGNC:5277 HTC1 hypertrichosis 1 (universalis, congenital) phenotype phenotype only Approved 8 08 Ambras syndrome 1994-01-05 2011-02-10 3341 "9712536|11932999" 145701 +HGNC:5278 HTC2 hypertrichosis 2 (generalized, congenital) phenotype phenotype only Approved Xq27.1 Xq27.1 "CGH|HCG" hypertrichosis 2 (generalised, congenital) 1996-03-19 2006-12-07 2014-02-04 3342 "12752576|21636067|23603273" +HGNC:5280 HTL high L-leucine transport phenotype phenotype only Approved 20 20 LEUT 2001-06-22 2014-02-04 3343 6717430 151310 +HGNC:5283 HTN1 histatin 1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 HIS1 Histatins and statherin 971 1990-04-09 2016-10-05 3346 ENSG00000126550 OTTHUMG00000129397 uc003hex.4 NM_002159 CCDS3534 P15515 RGD:1589974 HTN1 142701 +HGNC:5284 HTN3 histatin 3 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 HIS2 Histatins and statherin 971 1990-09-10 2016-10-11 3347 ENSG00000205649 OTTHUMG00000160841 uc003hew.2 NM_000200 CCDS33999 P15516 HTN3 142702 +HGNC:5285 HTOR 5-hydroxytryptamine (serotonin) oxygenase regulator other unknown Approved 21 21 2001-06-22 2012-10-02 3349 143460 +HGNC:5286 HTR1A 5-hydroxytryptamine receptor 1A protein-coding gene gene with protein product Approved 5q12.3 05q12.3 5-HT1A "ADRB2RL1|ADRBRL1" "5-hydroxytryptamine (serotonin) receptor 1A|5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1986-01-01 2016-02-04 2016-02-04 3350 ENSG00000178394 OTTHUMG00000162279 uc011cqt.4 AF498978 NM_000524 CCDS34168 P08908 "2591972|12969265" MGI:96273 RGD:2845 HTR1A 109760 objectId:1 +HGNC:5287 HTR1B 5-hydroxytryptamine receptor 1B protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "S12|5-HT1B|HTR1D2|5-HT1DB" "5-hydroxytryptamine (serotonin) receptor 1B|5-hydroxytryptamine (serotonin) receptor 1B, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1992-06-12 2016-02-04 2016-10-05 3351 ENSG00000135312 OTTHUMG00000015066 uc003pil.2 BC069065 NM_000863 CCDS4986 P28222 "1348246|11247661" MGI:96274 RGD:2846 HTR1B 182131 objectId:2 +HGNC:5289 HTR1D 5-hydroxytryptamine receptor 1D protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "RDC4|HT1DA|5-HT1D" HTRL "5-hydroxytryptamine (serotonin) receptor 1D|5-hydroxytryptamine (serotonin) receptor 1D, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1992-06-11 2016-02-04 2016-10-05 3352 ENSG00000179546 OTTHUMG00000003235 uc001bgn.3 M89955 NM_000864 CCDS231 P28221 "2541503|1662665" MGI:96276 RGD:2847 HTR1D 182133 objectId:3 +HGNC:5290 HTR1DP1 5-hydroxytryptamine receptor 1D pseudogene 1 pseudogene pseudogene Approved 12p13.33 12p13.33 5-hydroxytryptamine (serotonin) receptor 1D pseudogene 1 1993-06-08 2016-02-04 2016-10-11 100421479 ENSG00000275811 OTTHUMG00000187789 NG_023961 8444354 PGOHUM00000239288 +HGNC:5291 HTR1E 5-hydroxytryptamine receptor 1E protein-coding gene gene with protein product Approved 6q14.3 06q14.3 5-HT1E "5-hydroxytryptamine (serotonin) receptor 1E|5-hydroxytryptamine (serotonin) receptor 1E, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1992-09-01 2016-02-04 2016-10-05 3354 ENSG00000168830 OTTHUMG00000015154 uc003pli.4 NM_000865 CCDS5006 P28566 1608964 HTR1E 182132 objectId:4 +HGNC:5292 HTR1F 5-hydroxytryptamine receptor 1F protein-coding gene gene with protein product Approved 3p12 03p12 "HTR1EL|5-HT1F" "5-hydroxytryptamine (serotonin) receptor 1F|5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1993-05-26 2016-02-04 2016-02-04 3355 ENSG00000179097 OTTHUMG00000159008 uc062lsi.1 L05597 NM_000866 CCDS2920 P30939 "8384716|8380639" MGI:99842 RGD:71083 HTR1F 182134 objectId:5 +HGNC:5293 HTR2A 5-hydroxytryptamine receptor 2A protein-coding gene gene with protein product Approved 13q14.2 13q14.2 5-HT2A HTR2 "5-hydroxytryptamine (serotonin) receptor 2A|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1990-08-03 2016-02-04 2016-10-12 3356 ENSG00000102468 OTTHUMG00000016881 uc010acr.5 X57830 NM_000621 "CCDS9405|CCDS53867" P28223 8035173 MGI:109521 RGD:61800 LRG_1008|http://www.lrg-sequence.org/LRG/LRG_1008 HTR2A 182135 objectId:6 +HGNC:40289 HTR2A-AS1 HTR2A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 HTR2A antisense RNA 1 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874082 ENSG00000224517 OTTHUMG00000016880 uc032aen.2 NR_046612 +HGNC:5294 HTR2B 5-hydroxytryptamine receptor 2B protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "5-HT(2B)|5-HT2B" "5-hydroxytryptamine (serotonin) receptor 2B|5-hydroxytryptamine (serotonin) receptor 2B, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1994-07-05 2016-02-04 2016-10-05 3357 ENSG00000135914 OTTHUMG00000133222 uc002vro.4 NM_000867 CCDS2483 P41595 8143856 MGI:109323 RGD:61801 HTR2B 601122 objectId:7 +HGNC:5295 HTR2C 5-hydroxytryptamine receptor 2C protein-coding gene gene with protein product Approved Xq23 Xq23 "5-HT2C|5HTR2C" HTR1C "5-hydroxytryptamine (serotonin) receptor 2C|5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1994-08-29 2016-02-04 2016-10-12 3358 ENSG00000147246 OTTHUMG00000022226 uc004epu.1 NM_000868 "CCDS14564|CCDS59174" P28335 7895773 MGI:96281 RGD:2848 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HTR2C|LRG_1009|http://www.lrg-sequence.org/LRG/LRG_1009" HTR2C 312861 objectId:8 +HGNC:41344 HTR2C-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:5297 HTR3A 5-hydroxytryptamine receptor 3A protein-coding gene gene with protein product Approved 11q23.2 11q23.2 "5-HT3R|5-HT3A" HTR3 "5-hydroxytryptamine (serotonin) receptor 3A|5-hydroxytryptamine (serotonin) receptor 3A, ionotropic" 5-hydroxytryptamine receptors, ionotropic 172 1994-06-16 2016-02-04 2016-10-11 3359 ENSG00000166736 OTTHUMG00000160494 uc010rxc.3 D49394 NM_000869 "CCDS53710|CCDS8365|CCDS8366" P46098 "8530095|12867984" MGI:96282 RGD:61818 University of Heidelberg|http://hyg-serv-01.hyg.uni-heidelberg.de/lovd/home.php?select_db=HTR3A HTR3A 182139 objectId:373 +HGNC:5298 HTR3B 5-hydroxytryptamine receptor 3B protein-coding gene gene with protein product Approved 11q23.2 11q23.2 5-HT3B "5-hydroxytryptamine (serotonin) receptor 3B|5-hydroxytryptamine (serotonin) receptor 3B, ionotropic" 5-hydroxytryptamine receptors, ionotropic 172 1999-12-21 2016-02-04 2016-10-05 9177 ENSG00000149305 OTTHUMG00000168210 uc001pok.4 AF080582 NM_006028 CCDS8364 O95264 "9950429|10521471" MGI:1861899 RGD:61820 University of Heidelberg|http://hyg-serv-01.hyg.uni-heidelberg.de/lovd/home.php?select_db=HTR3B HTR3B 604654 objectId:374 +HGNC:24003 HTR3C 5-hydroxytryptamine receptor 3C protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "5-hydroxytryptamine (serotonin) receptor 3, family member C|5-hydroxytryptamine (serotonin) receptor 3C, ionotropic" 5-hydroxytryptamine receptors, ionotropic 172 2004-07-12 2016-02-04 2016-10-05 170572 ENSG00000178084 OTTHUMG00000156862 uc003fmk.4 AF459285 NM_130770 CCDS3250 Q8WXA8 "12801637|15157181" University of Heidelberg|http://hyg-serv-01.hyg.uni-heidelberg.de/lovd/home.php?select_db=HTR3C HTR3C 610121 objectId:375 +HGNC:24004 HTR3D 5-hydroxytryptamine receptor 3D protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "5-hydroxytryptamine (serotonin) receptor 3 family member D|5-hydroxytryptamine (serotonin) receptor 3D, ionotropic" 5-hydroxytryptamine receptors, ionotropic 172 2004-07-13 2016-02-04 2016-10-05 200909 ENSG00000186090 OTTHUMG00000156858 uc003fmj.3 AY159812 NM_182537 "CCDS3249|CCDS46966|CCDS54685" Q70Z44 12801637 University of Heidelberg|http://hyg-serv-01.hyg.uni-heidelberg.de/lovd/home.php?select_db=HTR3D HTR3D 610122 objectId:376 +HGNC:24005 HTR3E 5-hydroxytryptamine receptor 3E protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "5-hydroxytryptamine (serotonin) receptor 3, family member E|5-hydroxytryptamine (serotonin) receptor 3E, ionotropic" 5-hydroxytryptamine receptors, ionotropic 172 2004-07-12 2016-02-04 2016-10-05 285242 ENSG00000186038 OTTHUMG00000156857 uc003fmm.3 AY159813 NM_182589 "CCDS3251|CCDS58868|CCDS58869|CCDS58870|CCDS58871" A5X5Y0 "12801637|15157181" University of Heidelberg|http://hyg-serv-01.hyg.uni-heidelberg.de/lovd/home.php?select_db=HTR3E HTR3E 610123 objectId:377 +HGNC:41032 HTR3E-AS1 HTR3E antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.1 03q27.1 HTR3E antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 106478970 ENSG00000238020 OTTHUMG00000156861 uc062qqn.1 NR_133658 +HGNC:5299 HTR4 5-hydroxytryptamine receptor 4 protein-coding gene gene with protein product Approved 5q32 05q32 5-HT4 "5-hydroxytryptamine (serotonin) receptor 4|5-hydroxytryptamine (serotonin) receptor 4, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1997-07-22 2016-02-04 2016-10-05 3360 ENSG00000164270 OTTHUMG00000129931 uc003lpn.5 Y08756 NM_000870 "CCDS34270|CCDS34271|CCDS34272|CCDS34273|CCDS4291|CCDS75353" Q13639 "9371406|9276448" MGI:109246 RGD:2850 HTR4 602164 objectId:9 +HGNC:41345 HTR4-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:5300 HTR5A 5-hydroxytryptamine receptor 5A protein-coding gene gene with protein product Approved 7q36.2 07q36.2 5-HT5A "5-hydroxytryptamine (serotonin) receptor 5A|5-hydroxytryptamine (serotonin) receptor 5A, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1995-07-06 2016-02-04 2016-10-12 3361 ENSG00000157219 OTTHUMG00000151327 uc003wlu.3 NM_024012 CCDS5936 P47898 7988681 MGI:96283 RGD:2851 LRG_1057|http://www.lrg-sequence.org/LRG/LRG_1057 HTR5A 601305 objectId:10 +HGNC:48956 HTR5A-AS1 HTR5A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q36.2 07q36.2 HTR5AOS HTR5A opposite strand 2013-07-23 2014-10-03 2014-10-03 2014-10-03 100128264 ENSG00000220575 OTTHUMG00000151326 "BC031272|BC045795" NR_038945 +HGNC:16291 HTR5BP 5-hydroxytryptamine receptor 5B, pseudogene pseudogene pseudogene Approved 2q14.1 02q14.1 5-HT5B "GPR134|HTR5B" "G protein-coupled receptor 134|5-hydroxytryptamine (serotonin) receptor 5B|5-hydroxytryptamine (serotonin) receptor 5B, pseudogene" 5-hydroxytryptamine receptors, G protein-coupled 170 2001-07-20 2011-05-04 2016-02-04 2016-02-04 645694 ENSG00000125631 OTTHUMG00000058516 AB065453 NG_008325 PGOHUM00000240882 objectId:648 +HGNC:5301 HTR6 5-hydroxytryptamine receptor 6 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "5-HT6|5-HT6R" "5-hydroxytryptamine (serotonin) receptor 6|5-hydroxytryptamine (serotonin) receptor 6, G protein-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1997-12-11 2016-02-04 2016-10-05 3362 ENSG00000158748 OTTHUMG00000002713 uc001bcl.5 L41147 NM_000871 CCDS197 P50406 8522988 MGI:1196627 RGD:62044 HTR6 601109 objectId:11 +HGNC:5302 HTR7 5-hydroxytryptamine receptor 7 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 5-HT7 "5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)|5-hydroxytryptamine (serotonin) receptor 7, adenylate cyclase-coupled" 5-hydroxytryptamine receptors, G protein-coupled 170 1994-05-18 2016-02-04 2016-10-05 3363 ENSG00000148680 OTTHUMG00000018732 uc001kgz.4 BC047526 NM_000872 "CCDS7408|CCDS7409|CCDS7410" P34969 8226867 MGI:99841 RGD:71034 HTR7 182137 objectId:12 +HGNC:30411 HTR7P1 5-hydroxytryptamine receptor 7 pseudogene 1 pseudogene pseudogene Approved 12p13.1 12p13.1 HTR7P "5-hydroxytryptamine (serotonin) receptor 7 pseudogene|5-hydroxytryptamine (serotonin) receptor 7 pseudogene 1" 2006-01-20 2010-03-22 2016-02-04 2016-02-04 93164 ENSG00000183935 OTTHUMG00000167959 U86813 NR_002774 9473718 PGOHUM00000239681 +HGNC:9476 HTRA1 HtrA serine peptidase 1 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "HtrA|IGFBP5-protease|ARMD7" PRSS11 protease, serine, 11 (IGF binding) "Proteases, serine|PDZ domain containing" "738|1220" 1997-07-25 2005-08-18 2005-08-18 2016-10-05 5654 ENSG00000166033 OTTHUMG00000019186 uc001lgj.2 AF097709 NM_002775 CCDS7630 Q92743 8977104 MGI:1929076 RGD:69235 HTRA1 602194 138706 S01.277 +HGNC:14348 HTRA2 HtrA serine peptidase 2 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "OMI|PARK13" PRSS25 protease, serine, 25 "Parkinson disease associated genes|Proteases, serine|PDZ domain containing" "672|738|1220" 2001-09-26 2005-08-19 2005-08-19 2014-11-18 27429 ENSG00000115317 OTTHUMG00000129957 uc002smi.2 NM_013247 "CCDS1951|CCDS1952" O43464 "10644717|10971580" MGI:1928676 RGD:1308906 HTRA2 606441 122552 S01.278 +HGNC:30406 HTRA3 HtrA serine peptidase 3 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "Tasp|Prsp" pregnancy-related serine protease PDZ domain containing 1220 2004-11-18 2014-11-19 94031 ENSG00000170801 OTTHUMG00000090561 uc003gla.4 AY040094 NM_053044 "CCDS3400|CCDS75105" P83110 "12513693|14500695" MGI:1925808 RGD:1308120 HTRA3 608785 S01.284 +HGNC:26909 HTRA4 HtrA serine peptidase 4 protein-coding gene gene with protein product Approved 8p11.22 08p11.22 FLJ90724 PDZ domain containing 1220 2004-11-18 2016-10-05 203100 ENSG00000169495 OTTHUMG00000164070 uc003xmj.4 AK075205 NM_153692 CCDS6110 P83105 MGI:3036260 RGD:1306242 HTRA4 610700 S01.285 +HGNC:4851 HTT huntingtin protein-coding gene gene with protein product Approved 4p16.3 04p16.3 IT15 HD huntingtin (Huntington disease) Endogenous ligands 542 1986-01-01 2007-12-04 2007-12-04 2016-10-12 3064 ENSG00000197386 OTTHUMG00000159916 uc062uto.1 L12392 NM_002111 CCDS43206 P42858 8458085 MGI:96067 RGD:68337 "LOVD - Leiden Open Variation Database|http://proteomics.bio21.unimelb.edu.au/lovd/genes/HTT|LOVD Mendelian genes - huntingin (HTT)|https://grenada.lumc.nl/LOVD2/mendelian_genes/home.php?select_db=HTT|LRG_763|http://www.lrg-sequence.org/LRG/LRG_763" HTT 613004 122387 +HGNC:37118 HTT-AS HTT antisense RNA (head to head) non-coding RNA RNA, long non-coding Approved 4p16.3 04p16.3 HTTAS HTT-AS1 "HTT antisense RNA 1 (non-protein coding)|HTT antisense RNA 1" 2011-06-30 2013-08-27 2013-08-27 2013-08-27 100750326 ENSG00000251075 OTTHUMG00000159915 NR_045414 "21672921|23756188" +HGNC:34232 HULC hepatocellular carcinoma up-regulated long non-coding RNA non-coding RNA RNA, long non-coding Approved 6p24.3 06p24.3 "NCRNA00078|LINC00078|HCCAT1" "non-protein coding RNA 78|long intergenic non-protein coding RNA 78|hepatocellular carcinoma associated transcript 1 (non-protein coding)" highly up-regulated in liver cancer long non-coding RNA Long non-coding RNAs 788 2008-06-05 2013-05-22 2014-11-19 728655 ENSG00000251164 OTTHUMG00000160417 uc032wkv.2 NR_004855 "17241883|23728852" 612210 HULC +HGNC:13326 HUNK hormonally up-regulated Neu-associated kinase protein-coding gene gene with protein product Approved 21q22.11 21q22.11 hormonally upregulated Neu-associated kinase 2000-12-13 2008-06-05 2016-10-05 30811 ENSG00000142149 OTTHUMG00000085019 uc002yph.3 AJ271722 NM_014586 CCDS13610 P57058 "10662544|10830953" MGI:1347352 RGD:1565091 HUNK 606532 objectId:2037 +HGNC:40631 HUNK-AS1 HUNK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 TCONS_00028914 2013-08-08 2014-11-18 106144524 ENSG00000237138 OTTHUMG00000085305 CD689785 +HGNC:5309 HUS1 HUS1 checkpoint clamp component protein-coding gene gene with protein product Approved 7p12.3 07p12.3 hus1+-like protein "HUS1 (S. pombe) checkpoint homolog|HUS1 checkpoint homolog (S. pombe)" Checkpoint clamp complex 1339 1998-07-31 2015-06-22 2015-06-22 3364 ENSG00000136273 OTTHUMG00000155645 uc003tod.3 Y16893 NM_004507 CCDS34635 O60921 "9878245|9524127|11944979" MGI:1277962 RGD:1591976 HUS1 603760 +HGNC:16485 HUS1B HUS1 checkpoint clamp component B protein-coding gene gene with protein product Approved 6p25.3 06p25.3 "HUS1 (S. pombe) checkpoint homolog b|HUS1 checkpoint homolog b (S. pombe)" 2003-06-27 2015-06-22 2015-08-25 135458 ENSG00000188996 OTTHUMG00000090059 uc003mtg.4 AF508547 NM_148959 CCDS4470 Q8NHY5 "11944979|24013428" MGI:2671003 RGD:1585035 HUS1B 609713 +HGNC:30892 HUWE1 HECT, UBA and WWE domain containing 1, E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "Ib772|KIAA0312|UREB1" HECT, UBA and WWE domain containing 1 2005-02-01 2012-02-23 2014-11-18 10075 ENSG00000086758 OTTHUMG00000021617 uc033eew.2 AB071605 XM_497119 CCDS35301 Q7Z6Z7 "9205841|10998601" MGI:1926884 RGD:1561763 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HUWE1 HUWE1 300697 209314 +HGNC:5310 HV1S entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-02-04 +HGNC:5311 HVBS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:5312 HVBS4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:5313 HVBS6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-21 +HGNC:5314 HVBS7 hepatitis B virus integration site 7 other virus integration site Approved 18q11.1-q11.2 18q11.1-q11.2 1988-07-29 2010-06-21 3369 2830013 +HGNC:5315 HVBS8 hepatitis B virus integration site 8 other virus integration site Approved 17p12-p11.2 17p12-p11.2 1989-04-13 2010-06-16 3370 M23190 2845134 +HGNC:28240 HVCN1 hydrogen voltage gated channel 1 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "MGC15619|Hv1|VSOP" voltage sensor domain-only protein hydrogen voltage-gated channel 1 Hydrogen voltage gated channels 254 2006-03-28 2006-03-24 2015-01-16 2015-01-16 84329 ENSG00000122986 OTTHUMG00000169530 uc001trs.3 BC007277 NM_032369 "CCDS31900|CCDS58278" Q96D96 "20961760|16556803|18356202|22020278" MGI:1921346 RGD:1310788 HVCN1 611227 objectId:746 +HGNC:5320 HYAL1 hyaluronoglucosaminidase 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "LUCA1|HYAL-1|FUS2|NAT6" 1997-10-09 2014-11-19 3373 ENSG00000114378 OTTHUMG00000156941 uc003czs.4 U90094 XM_011533667 "CCDS2816|CCDS2817|CCDS46832|CCDS46833" Q12794 "9223416|9409739" MGI:96298 RGD:1303060 HYAL1 607071 122556 3.2.1.35 +HGNC:5321 HYAL2 hyaluronoglucosaminidase 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "LuCa-2|LUCA2" "lysosomal hyaluronidase|PH-20 homolog|hyaluronidase 2" 1998-11-06 2016-10-05 8692 ENSG00000068001 OTTHUMG00000156876 uc003czv.4 AJ000099 NM_003773 CCDS2818 Q12891 "9712871|9790770" MGI:1196334 RGD:620321 HYAL2 603551 +HGNC:5322 HYAL3 hyaluronoglucosaminidase 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "LUCA-3|LUCA14|Minna14" 1998-09-17 2016-10-05 8372 ENSG00000186792 OTTHUMG00000156936 uc003czd.3 AF040710 NM_003549 "CCDS2815|CCDS56259|CCDS56260|CCDS56257" O43820 10493834 MGI:1330288 RGD:1303334 HYAL3 604038 +HGNC:5323 HYAL4 hyaluronoglucosaminidase 4 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 hyaluronidase 4 1999-09-16 2016-10-05 23553 ENSG00000106302 OTTHUMG00000157349 uc003vlc.4 AF009010 NM_012269 CCDS5789 Q2M3T9 10493834 MGI:1924292 RGD:1303194 HYAL4 604510 +HGNC:5324 HYALP1 hyaluronoglucosaminidase pseudogene 1 pseudogene pseudogene Approved 7q31.32 07q31.32 HYAL6 1999-11-16 2012-02-29 26062 ENSG00000228211 OTTHUMG00000154764 AF149304 NR_002731 10493834 PGOHUM00000233547 +HGNC:13822 HYD2 hypodontia 2 (autosomal recessive) phenotype phenotype only Approved 16q12.1 16q12.1 hypodontia, autosomal recessive (2) 2000-11-24 2014-02-04 2014-02-04 8137 9529357 602639 +HGNC:19368 HYDIN HYDIN, axonemal central pair apparatus protein protein-coding gene gene with protein product Approved 16q22.2 16q22.2 "DKFZp434D0513|KIAA1864|PPP1R31|CILD5" protein phosphatase 1, regulatory subunit 31 "hydrocephalus inducing|hydrocephalus inducing homolog (mouse)" Protein phosphatase 1 regulatory subunits 694 2003-06-27 2012-01-06 2014-11-19 54768 ENSG00000157423 OTTHUMG00000137584 uc021tkq.3 AK074472 NM_001270974 "CCDS10897|CCDS56004|CCDS56005|CCDS59269" Q4G0P3 "12719380|23022101" MGI:2389007 RGD:1562254 HYDIN 610812 316341 +HGNC:33129 HYDIN2 HYDIN2, axonemal central pair apparatus protein (pseudogene) pseudogene pseudogene Approved 1q21.1 01q21.1 HYDINP1 "hydrocephalus inducing homolog 2 (mouse)|HYDIN, axonemal central pair apparatus protein pseudogene 1" 2006-09-05 2012-01-11 2012-01-11 2015-01-29 100288805 ENSG00000276975 OTTHUMG00000158075 AB058767 XR_133104 16938426 610813 PGOHUM00000296540 +HGNC:26948 HYI hydroxypyruvate isomerase (putative) protein-coding gene gene with protein product Approved 1p34.2 01p34.2 HT036 hydroxypyruvate isomerase homolog (E. coli) 2005-05-25 2010-06-24 2016-04-25 81888 ENSG00000178922 OTTHUMG00000007502 uc001cjo.3 NM_031207 "CCDS488|CCDS53309|CCDS72771|CCDS81313" Q5T013 10561547 MGI:1915430 RGD:1561416 HYI 5.3.1.22 +HGNC:41173 HYI-AS1 HYI antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p34.2 01p34.2 HYI antisense RNA 1 (non-protein coding) 2011-12-05 2012-08-15 2014-11-19 100873923 ENSG00000229348 OTTHUMG00000007503 uc057foc.1 +HGNC:34403 HYKK hydroxylysine kinase protein-coding gene gene with protein product Approved 15q25.1 15q25.1 LOC123688 5-hydroxylysine kinase AGPHD1 aminoglycoside phosphotransferase domain containing 1 2009-05-22 2013-06-11 2013-06-11 2014-11-19 123688 ENSG00000188266 "BC132753|BC144383|BM045979" NM_001013619 "CCDS42063|CCDS45318" A2RU49 "18780872|22241472" MGI:2443139 RGD:1308677 614681 2.7.1.81 +HGNC:26558 HYLS1 HYLS1, centriolar and ciliogenesis associated protein-coding gene gene with protein product Approved 11q24.2 11q24.2 FLJ32915 hydrolethalus syndrome 1 2005-05-04 2016-05-10 2016-05-10 219844 ENSG00000198331 OTTHUMG00000165858 uc009zbv.4 AK057477 NM_145014 CCDS8467 Q96M11 "15843405|19656802" MGI:1924082 RGD:1594169 HYLS1 610693 122562 +HGNC:5326 HYMAI hydatidiform mole associated and imprinted (non-protein coding) non-coding RNA RNA, long non-coding Approved 6q24.2 06q24.2 NCRNA00020 non-protein coding RNA 20 2000-06-15 2008-08-13 2016-10-12 57061 ENSG00000283122 OTTHUMG00000189750 uc063sag.1 AF241534 NR_002768 10936046 LRG_1035|http://www.lrg-sequence.org/LRG/LRG_1035 606546 159723 +HGNC:16931 HYOU1 hypoxia up-regulated 1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "ORP150|HSP12A|Grp170" glucose-regulated protein 170 Heat shock 70kDa proteins 583 2002-05-27 2016-10-05 10525 ENSG00000149428 OTTHUMG00000166354 uc031yhc.2 U65785 NM_006389 CCDS8408 Q9Y4L1 "9020069|10037731" MGI:108030 RGD:621146 HYOU1 601746 +HGNC:18418 HYPK huntingtin interacting protein K protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "HSPC136|FLJ20431" Huntingtin yeast partner K C15orf63 chromosome 15 open reading frame 63 2009-06-12 2012-10-08 2012-10-08 2016-10-05 25764 ENSG00000242028 OTTHUMG00000060146 uc059inn.1 AF049613 NM_016400 CCDS10104 Q9NX55 "9700202|20154145" MGI:1914943 RGD:1311457 612784 +HGNC:18417 HYPM huntingtin interacting protein M protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 HIP17 CXorf27 chromosome X open reading frame 27 2004-07-29 2014-05-22 2014-05-22 2016-10-05 25763 ENSG00000187516 OTTHUMG00000033180 AF049615 NM_012274 CCDS43929 O75409 9700202 MGI:1914584 RGD:1563155 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf27 +HGNC:27696 IAH1 isoamyl acetate-hydrolyzing esterase 1 homolog protein-coding gene gene with protein product Approved 2p25.1 02p25.1 isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) 2006-11-24 2015-07-03 2015-08-25 285148 ENSG00000134330 OTTHUMG00000159076 uc002qzr.4 BC111025 NM_001039613 "CCDS42651|CCDS82418" Q2TAA2 12477932 MGI:1914982 RGD:727866 IAH1 +HGNC:5329 IAPP islet amyloid polypeptide protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "AMYLIN|DAP|IAP" amylin Endogenous ligands 542 1989-05-24 2014-11-19 3375 ENSG00000121351 OTTHUMG00000169128 uc058lui.1 NM_000415 CCDS8688 P10997 MGI:96382 RGD:2854 IAPP 147940 +HGNC:5330 IARS isoleucyl-tRNA synthetase protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "ILRS|IARS1" isoleucine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class I 131 1995-07-11 2007-02-26 2016-10-05 3376 ENSG00000196305 OTTHUMG00000020219 uc004art.4 AB209234 NM_002161 CCDS6694 P41252 8812440 MGI:2145219 RGD:621022 IARS 600709 6.1.1.5 +HGNC:29685 IARS2 isoleucyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 1q41 01q41 FLJ10326 isoleucine tRNA ligase 2, mitochondrial Aminoacyl tRNA synthetases, Class I 131 2005-05-09 2007-02-26 2014-11-19 55699 ENSG00000067704 OTTHUMG00000037287 uc001hmc.4 AK022665 NM_018060 CCDS1523 Q9NSE4 MGI:1919586 RGD:1311857 IARS2 612801 444729 6.1.1.5 +HGNC:50474 IARS2P1 isoleucyl-tRNA synthetase 2, mitochondrial pseudogene 1 pseudogene pseudogene Approved 8q21.3 08q21.3 2014-05-06 2014-05-06 642461 ENSG00000251563 OTTHUMG00000160488 NG_028883 PGOHUM00000249423 +HGNC:27302 IBA57 IBA57 homolog, iron-sulfur cluster assembly protein-coding gene gene with protein product Approved 1q42.13 01q42.13 FLJ12734 iron-sulfur cluster assembly factor for biotin synthase- and aconitase-like mitochondrial proteins, with a mass of 57kDa C1orf69 "chromosome 1 open reading frame 69|IBA57, iron-sulfur cluster assembly homolog (S. cerevisiae)" 2005-05-18 2011-03-11 2015-07-02 2015-07-02 200205 ENSG00000181873 OTTHUMG00000039769 uc001hsl.5 AK022796 NM_001010867 CCDS31046 Q5T440 22323289 MGI:3041174 RGD:1306000 IBA57 615316 365096 +HGNC:32062 IBA57-AS1 IBA57 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 1q42.13 01q42.13 FLJ32878 C1orf148 chromosome 1 open reading frame 148 2005-07-12 2013-08-29 2013-08-29 2014-11-18 574432 ENSG00000203684 OTTHUMG00000039768 AK057440 NR_103539 B1ANH7 +HGNC:5332 IBD2 inflammatory bowel disease 2 phenotype phenotype only Approved 12p13.2-q24.1 12p13.2-q24.1 1998-07-10 2008-07-03 3378 "8841195|9634527" 601458 +HGNC:13863 IBD3 inflammatory bowel disease 3 phenotype phenotype only Approved 6p 06p 2000-11-15 2011-02-10 30829 10577918 604519 +HGNC:5333 IBD4 inflammatory bowel disease 4 phenotype phenotype only Approved 14q11-q12 14q11-q12 2000-03-29 2008-05-14 50608 10747815 606675 +HGNC:5334 IBD5 inflammatory bowel disease 5 phenotype phenotype only Approved 5q31-q33 05q31-q33 2000-05-05 2007-12-07 50941 10777714 606348 +HGNC:5335 IBD6 inflammatory bowel disease 6 phenotype phenotype only Approved 19p13 19p13 2000-05-05 2007-11-30 50942 10777714 606674 +HGNC:14242 IBD7 inflammatory bowel disease 7 phenotype phenotype only Approved 1p36 01p36 2000-12-12 2000-12-12 57042 "10814724|9636179" 605225 +HGNC:20235 IBD8 inflammatory bowel disease 8 phenotype phenotype only Approved 16p 16p 2003-01-10 2014-02-04 170595 14627676 606668 +HGNC:20236 IBD9 inflammatory bowel disease 9 phenotype phenotype only Approved 3p26 03p26 2003-01-10 2003-01-10 317669 12354785 608448 +HGNC:5336 IBGC1 idiopathic basal ganglia calcification 1 phenotype phenotype only Approved 14q 14q 1999-06-02 2014-02-04 23706 "10441584|23054591" +HGNC:5341 IBSP integrin binding sialoprotein protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "BSP|SP-II|BSP-II" "bone sialoprotein|bone sialoprotein II" SIBLING family 1279 1993-03-23 2016-01-12 2016-10-05 3381 ENSG00000029559 OTTHUMG00000130600 uc003hqx.5 NM_004967 CCDS3624 P21815 8406493 MGI:96389 RGD:2855 IBSP 147563 +HGNC:17853 IBTK inhibitor of Bruton tyrosine kinase protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "DKFZP564B116|BTBD26" BTKI "Bruton agammaglobulinemia tyrosine kinase inhibitor|inhibitor of Bruton agammaglobulinemia tyrosine kinase" "Ankyrin repeat domain containing|BTB domain containing" "403|861" 2003-08-29 2003-10-08 2015-11-27 2016-10-05 25998 ENSG00000005700 OTTHUMG00000015102 uc003pjl.2 AF235049 NM_015525 "CCDS34490|CCDS75486" Q9P2D0 11577348 MGI:1918677 RGD:1311697 IBTK 606457 +HGNC:31672 IBTKP1 inhibitor of Bruton tyrosine kinase pseudogene 1 pseudogene pseudogene Approved 18q12.3 18q12.3 "IBTK pseudogene 1|inhibitor of Bruton agammaglobulinemia tyrosine kinase pseudogene 1" 2010-03-19 2015-11-27 2015-11-27 100127883 NG_022990 PGOHUM00000235047 +HGNC:5342 IC1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:5343 ICA1 islet cell autoantigen 1 protein-coding gene gene with protein product Approved 7p21.3 07p21.3 "ICAp69|ICA69" "islet cell autoantigen 1 (69kD)|islet cell autoantigen 1, 69kDa" Classical BAR domain containing 1292 1992-08-24 2015-11-09 2016-10-05 3382 ENSG00000003147 OTTHUMG00000152008 uc003srq.5 NM_004968 "CCDS34602|CCDS64595" Q05084 "7918678|8777998" MGI:96391 RGD:621465 ICA1 147625 +HGNC:14442 ICA1L islet cell autoantigen 1 like protein-coding gene gene with protein product Approved 2q33.2 02q33.2 "ALS2CR15|ALS2CR14" "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 15|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 14|islet cell autoantigen 1,69kDa-like" Classical BAR domain containing 1292 2001-01-26 2006-05-26 2015-11-10 2016-10-05 130026 ENSG00000163596 OTTHUMG00000132856 uc032oqc.1 AB053317 NM_138468 "CCDS2354|CCDS74632" Q8NDH6 11586298 MGI:1917625 RGD:735110 ICA1L +HGNC:5344 ICAM1 intercellular adhesion molecule 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "BB2|CD54" human rhinovirus receptor "CD molecules|Endogenous ligands|Immunoglobulin like domain containing" "471|542|594" 1989-04-24 2008-07-18 2016-01-15 3383 ENSG00000090339 OTTHUMG00000180403 uc002mnq.3 NM_000201 CCDS12231 P05362 "2453850|3871395" MGI:96392 RGD:2857 ICAM1 147840 CD54 +HGNC:5345 ICAM2 intercellular adhesion molecule 2 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 CD102 "CD molecules|Endogenous ligands|Immunoglobulin like domain containing" "471|542|594" 1990-03-06 2015-08-28 3384 ENSG00000108622 OTTHUMG00000178865 uc002jdv.5 NM_001099786 CCDS11657 P13598 1769660 MGI:96394 RGD:1359660 ICAM2 146630 CD102 +HGNC:5346 ICAM3 intercellular adhesion molecule 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "CDW50|ICAM-R|CD50" "CD molecules|Immunoglobulin like domain containing" "471|594" 1994-05-19 2016-01-15 3385 ENSG00000076662 OTTHUMG00000180410 uc002mob.3 NM_002162 "CCDS12235|CCDS82290" P32942 1448174 ICAM3 146631 CD50 +HGNC:5347 ICAM4 intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) protein-coding gene gene with protein product Approved 19p13.2 19p13.2 CD242 LW "intercellular adhesion molecule 4, Landsteiner-Wiener blood group|Landsteiner-Wiener blood group|intercellular adhesion molecule 4 (LW blood group)" "Blood group antigens|CD molecules|Immunoglobulin like domain containing" "454|471|594" 2001-06-22 2006-02-23 2016-10-12 3386 ENSG00000105371 OTTHUMG00000180405 uc002mns.3 X93093 NM_001544 "CCDS12232|CCDS32904|CCDS42500" Q14773 "8639917|6431896" MGI:1925619 RGD:1308971 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_809|http://www.lrg-sequence.org/LRG/LRG_809" ICAM4 614088 CD242 +HGNC:5348 ICAM5 intercellular adhesion molecule 5 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 TLN telencephalin TLCN Immunoglobulin like domain containing 594 1997-05-15 2015-11-13 2015-11-13 7087 ENSG00000105376 OTTHUMG00000180406 uc002mnu.5 U72671 NM_003259 CCDS12233 Q9UMF0 "8995416|9828136" MGI:109430 RGD:1305039 ICAM5 601852 +HGNC:29154 ICE1 interactor of little elongation complex ELL subunit 1 protein-coding gene gene with protein product Approved 5p15.32 05p15.32 KIAA0947 KIAA0947 2009-06-19 2014-06-03 2014-11-03 2014-11-03 23379 ENSG00000164151 OTTHUMG00000161639 NM_015325.1 CCDS47187 Q9Y2F5 "10231032|23932780" MGI:2385865 RGD:1309747 +HGNC:29885 ICE2 interactor of little elongation complex ELL subunit 2 protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "FLJ11896|BRCC1" breast cancer cell 1 NARG2 NMDA receptor regulated 2 2004-12-01 2014-06-03 2014-11-03 2014-11-19 79664 ENSG00000128915 OTTHUMG00000132764 BC013684 NM_024611 "CCDS10176|CCDS61657" Q659A1 "11297529|23932780" MGI:2135947 RGD:1585038 610835 +HGNC:48856 ICE2P1 interactor of little elongation complex ELL subunit 2 pseudogene 1 pseudogene pseudogene Approved 4q35.2 04q35.2 NARG2P1 NMDA receptor regulated 2 pseudogene 1 2013-06-19 2014-06-03 2014-11-03 2014-11-03 644491 ENSG00000248880 OTTHUMG00000160211 NG_022044 PGOHUM00000245794 +HGNC:48857 ICE2P2 interactor of little elongation complex ELL subunit 2 pseudogene 2 pseudogene pseudogene Approved 3p11.1 03p11.1 NARG2P2 NMDA receptor regulated 2 pseudogene 2 2013-06-19 2014-06-03 2014-11-03 2014-11-03 728432 ENSG00000242705 OTTHUMG00000159037 NG_022254 PGOHUM00000238096 +HGNC:21219 ICK intestinal cell kinase protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "MRK|LCK2|KIAA0936|MGC46090" "serine/threonine-protein kinase ICK|MAK-related kinase" intestinal cell (MAK-like) kinase 2003-08-21 2016-06-27 2016-10-05 22858 ENSG00000112144 OTTHUMG00000014870 uc003pbh.3 AB023153 NM_016513 CCDS4949 Q9UPZ9 12103360 MGI:1934157 RGD:71050 ICK 612325 201496 objectId:2038 +HGNC:5350 ICMT isoprenylcysteine carboxyl methyltransferase protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "PCCMT|HSTE14|PPMT" protein-S-isoprenylcysteine O-methyltransferase 2000-01-20 2016-10-05 23463 ENSG00000116237 OTTHUMG00000001254 uc001amk.4 AF064084 NM_012405 CCDS61 O60725 "9614111|10441503" MGI:1888594 RGD:621618 ICMT 605851 2.1.1.100 +HGNC:5351 ICOS inducible T-cell costimulator protein-coding gene gene with protein product Approved 2q33.2 02q33.2 "AILIM|CD278" activation-inducible lymphocyte immunomediatory molecule CD molecules 471 2000-02-29 2016-05-25 2016-10-12 29851 ENSG00000163600 OTTHUMG00000132880 uc002vam.4 AB023135 NM_012092 CCDS2363 Q9Y6W8 "9930702|10617205" MGI:1858745 RGD:620123 "ICOSbase: Mutation registry for ICOS deficiency|http://structure.bmc.lu.se/idbase/ICOSbase/|LRG_65|http://www.lrg-sequence.org/LRG/LRG_65" ICOS 604558 122565 CD278 +HGNC:17087 ICOSLG inducible T-cell costimulator ligand protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KIAA0653|GL50|B7-H2|B7RP-1|B7H2|B7RP1|ICOS-L|CD275" "B7-related protein 1|B7 homologue 2|B7 homolog 2" ICOSL "CD molecules|Endogenous ligands|V-set domain containing|C2-set domain containing" "471|542|590|592" 2003-12-12 2005-01-12 2016-05-25 2016-05-25 23308 ENSG00000160223 OTTHUMG00000086920 uc002zee.5 AB014553 NM_015259 "CCDS42952|CCDS63377|CCDS63379" O75144 "9734811|11007762" MGI:1354701 RGD:1562791 ICOSLG 605717 CD275 +HGNC:5352 ICR1 ichthyosis congenita I, erythromatous lamellar ichthyosis, ichthyosiform erythroderma phenotype phenotype only Approved reserved reserved 1991-07-04 2011-02-10 3388 +HGNC:5354 ICR3 ichthyosis congenita III, vulgaris-like recessive ichthyosis phenotype phenotype only Approved reserved reserved 1991-07-04 2011-02-10 3390 +HGNC:5355 ICR4 ichthyosis congenita IV, ichthyosis-prematurity syndrome phenotype phenotype only Approved reserved reserved 1991-07-04 2011-02-10 3391 +HGNC:5356 ICR5 ichthyosis congenita V, Sjogren-Larsson-like phenotype phenotype only Approved reserved reserved 1991-07-04 2011-02-10 +HGNC:5357 ICS1 immotile cilia syndrome 1 phenotype phenotype only Approved 6p21.3 06p21.3 1993-01-28 2011-02-10 1601418 +HGNC:5360 ID1 inhibitor of DNA binding 1, HLH protein protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "dJ857M17.1.2|bHLHb24" "DNA-binding protein inhibitor ID-1|inhibitor of differentiation 1" inhibitor of DNA binding 1, dominant negative helix-loop-helix protein Basic helix-loop-helix proteins 420 1994-12-22 2016-03-07 2016-10-05 3397 ENSG00000125968 OTTHUMG00000032181 uc002wwg.3 NM_002165 "CCDS13185|CCDS13186" P41134 8294468 MGI:96396 RGD:2858 ID1 600349 +HGNC:5361 ID2 inhibitor of DNA binding 2, HLH protein protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "GIG8|bHLHb26" cell growth-inhibiting gene 8 "inhibitor of differentiation 2|inhibitor of DNA binding 2, dominant negative helix-loop-helix protein" Basic helix-loop-helix proteins 420 1994-12-22 2016-03-07 2016-10-05 3398 ENSG00000115738 OTTHUMG00000112454 uc002qza.4 NM_002166 CCDS1659 Q02363 8294468 MGI:96397 RGD:2859 ID2 600386 +HGNC:51103 ID2-AS1 ID2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 2p25.1 02p25.1 2014-07-29 2014-07-29 100506299 ENSG00000235092 OTTHUMG00000151625 NR_110154 +HGNC:30656 ID2B inhibitor of DNA binding 2B, HLH protein (pseudogene) pseudogene pseudogene Approved 3p21.1 03p21.1 inhibitor of differentiation 2B "inhibitor of DNA binding 2B, dominant negative helix-loop-helix protein|inhibitor of DNA binding 2B, dominant negative helix-loop-helix protein (pseudogene)" 2004-01-12 2016-03-07 2016-03-07 84099 M96843 NG_000937 Q14602 8224921 ID2B +HGNC:5362 ID3 inhibitor of DNA binding 3, HLH protein protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "HEIR-1|bHLHb25" inhibitor of differentiation 3 inhibitor of DNA binding 3, dominant negative helix-loop-helix protein Basic helix-loop-helix proteins 420 1994-12-19 2016-03-07 2016-10-05 3399 ENSG00000117318 OTTHUMG00000003229 uc001bhh.5 X69111 NM_002167 CCDS237 Q02535 1628620 MGI:96398 RGD:2860 ID3 600277 +HGNC:5363 ID4 inhibitor of DNA binding 4, HLH protein protein-coding gene gene with protein product Approved 6p22.3 06p22.3 bHLHb27 inhibitor of differentiation 4 inhibitor of DNA binding 4, dominant negative helix-loop-helix protein Basic helix-loop-helix proteins 420 1995-02-13 2016-03-07 2016-03-07 3400 ENSG00000172201 OTTHUMG00000014333 uc003ncw.5 U16153 NM_001546 CCDS4544 P47928 7665172 MGI:99414 RGD:631428 ID4 600581 +HGNC:5374 IDDM3 insulin dependent diabetes mellitus 3 phenotype phenotype only Approved 15q26 15q26 1994-11-08 2016-06-08 2016-06-08 3402 7842018 600318 +HGNC:5375 IDDM4 insulin dependent diabetes mellitus 4 phenotype phenotype only Approved 11q13 11q13 1994-11-08 2016-06-08 2016-06-08 3403 "7842018|8072542" 600319 +HGNC:5377 IDDM6 insulin dependent diabetes mellitus 6 phenotype phenotype only Approved 18q21 18q21 1994-11-08 2016-06-08 2016-06-08 3405 9215667 601941 +HGNC:5378 IDDM7 insulin dependent diabetes mellitus 7 phenotype phenotype only Approved 2q31 02q31 1994-11-08 2016-06-08 2016-06-08 3406 7813807 600321 +HGNC:5379 IDDM8 insulin dependent diabetes mellitus 8 phenotype phenotype only Approved 6q27 06q27 1995-02-02 2016-06-08 2016-06-08 3407 7573053 600883 +HGNC:5380 IDDM9 insulin dependent diabetes mellitus 9 phenotype phenotype only Approved 3q22.3-q25.1 03q22.3-q25.1 1995-02-02 2016-06-08 2016-06-08 3408 "7567975|10213040|9662409|10527397" +HGNC:5365 IDDM11 insulin dependent diabetes mellitus 11 phenotype phenotype only Approved 14q24.3-q31 14q24.3-q31 1995-03-29 2016-06-08 2016-06-08 3410 8617492 601208 +HGNC:5367 IDDM13 insulin dependent diabetes mellitus 13 phenotype phenotype only Approved 2q34 02q34 1996-04-25 2016-06-08 2016-06-08 3412 8650584 601318 +HGNC:5368 IDDM14 insulin dependent diabetes mellitus 14 phenotype phenotype only Approved 2q34-q35 02q34-q35 1996-04-25 2016-06-08 2016-06-08 3413 8650584 +HGNC:5369 IDDM15 insulin dependent diabetes mellitus 15 phenotype phenotype only Approved 6q21 06q21 1996-08-08 2016-06-08 2016-06-08 3414 8981961 601666 +HGNC:5370 IDDM16 insulin dependent diabetes mellitus 16 phenotype phenotype only Approved 14q32.32-q32.33 14q32.32-q32.33 1997-08-22 2016-06-08 2016-06-08 3415 12209360 +HGNC:5371 IDDM17 insulin dependent diabetes mellitus 17 phenotype phenotype only Approved 10q25 10q25 1998-11-13 2016-06-08 2016-06-08 8691 9788970 603266 +HGNC:5372 IDDM18 insulin dependent diabetes mellitus 18 phenotype phenotype only Approved 5q33-q35 05q33-q35 2000-09-01 2016-06-08 2016-06-08 57044 605598 +HGNC:5381 IDE insulin degrading enzyme protein-coding gene gene with protein product Approved 10q23.33 10q23.33 insulysin insulin-degrading enzyme 1990-07-03 2016-02-01 2016-10-05 3416 ENSG00000119912 OTTHUMG00000018759 uc001kia.4 M21188 NM_004969 "CCDS7421|CCDS53554" P14735 2293021 MGI:96412 RGD:2861 IDE 146680 M16.002 objectId:2371 +HGNC:5382 IDH1 isocitrate dehydrogenase (NADP(+)) 1, cytosolic protein-coding gene gene with protein product Approved 2q34 02q34 "isocitrate dehydrogenase 1 (NADP+), soluble|isocitrate dehydrogenase 1 (NADP+)" 2001-06-22 2016-04-28 2016-10-12 3417 ENSG00000138413 OTTHUMG00000132943 uc002vcu.5 NM_005896 CCDS2381 O75874 MGI:96413 RGD:2862 LRG_610|http://www.lrg-sequence.org/LRG/LRG_610 IDH1 147700 299152 objectId:2884 1.1.1.42 +HGNC:40292 IDH1-AS1 IDH1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q34 02q34 IDH1 antisense RNA 1 (non-protein coding) 2012-02-24 2012-08-15 2014-11-19 100507475 ENSG00000231908 OTTHUMG00000154707 uc061rwz.1 "AI492612|BE465811" NR_046452 +HGNC:5383 IDH2 isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding gene gene with protein product Approved 15q26.1 15q26.1 isocitrate dehydrogenase 2 (NADP+), mitochondrial 1986-01-01 2016-04-28 2016-10-12 3418 ENSG00000182054 OTTHUMG00000149815 uc002box.4 NM_001289910 "CCDS10359|CCDS76792" P48735 MGI:96414 RGD:1597139 LRG_611|http://www.lrg-sequence.org/LRG/LRG_611 IDH2 147650 247145 objectId:2885 1.1.1.42 +HGNC:5384 IDH3A isocitrate dehydrogenase 3 (NAD(+)) alpha protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "H-IDH alpha|isocitric dehydrogenase|isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial|NAD+-specific ICDH|NAD(H)-specific isocitrate dehydrogenase alpha subunit|isocitrate dehydrogenase (NAD+) alpha chain" isocitrate dehydrogenase 3 (NAD+) alpha 1995-11-02 2016-04-28 2016-10-05 3419 ENSG00000166411 OTTHUMG00000143732 uc002bdd.4 NM_005530 CCDS10297 P50213 8833160 MGI:1915084 RGD:70889 IDH3A 601149 1.1.1.41 +HGNC:5385 IDH3B isocitrate dehydrogenase 3 (NAD(+)) beta protein-coding gene gene with protein product Approved 20p13 20p13 RP46 isocitrate dehydrogenase 3 (NAD+) beta 1995-11-02 2016-04-28 2016-04-28 3420 ENSG00000101365 OTTHUMG00000031699 uc002wgp.4 NM_006899 "CCDS13031|CCDS13032|CCDS74696|CCDS82594" O43837 10575215 MGI:2158650 RGD:621881 IDH3B 604526 176228 1.1.1.41 +HGNC:5386 IDH3G isocitrate dehydrogenase 3 (NAD(+)) gamma protein-coding gene gene with protein product Approved Xq28 Xq28 isocitrate dehydrogenase 3 (NAD+) gamma 1995-11-02 2016-04-28 2016-04-28 3421 ENSG00000067829 OTTHUMG00000024219 uc004fip.4 NM_004135 "CCDS14730|CCDS44019" P51553 9286695 MGI:1099463 RGD:2863 IDH3G 300089 1.1.1.41 +HGNC:5387 IDI1 isopentenyl-diphosphate delta isomerase 1 protein-coding gene gene with protein product Approved 10p15.3 10p15.3 IPP isomerase isopentenyl-diphosphate delta isomerase 1995-11-08 2005-07-25 2015-08-25 3422 ENSG00000067064 OTTHUMG00000017536 uc001iga.4 BC006999 NM_004508 CCDS7056 Q13907 8020941 MGI:2442264 RGD:621835 IDI1 604055 objectId:646 5.3.3.2 +HGNC:23487 IDI2 isopentenyl-diphosphate delta isomerase 2 protein-coding gene gene with protein product Approved 10p15.3 10p15.3 IPPI2 2003-11-19 2015-11-30 91734 ENSG00000148377 OTTHUMG00000017537 uc001ifv.1 AF271725 NM_033261 CCDS7055 Q9BXS1 12477932 MGI:2444315 RGD:1559783 IDI2 615389 objectId:647 5.3.3.2 +HGNC:30885 IDI2-AS1 IDI2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p15.3 10p15.3 "HT009|Em:AC022536.4" "C10orf110|IDI2-AS" "chromosome 10 open reading frame 110|IDI2 antisense RNA (non-protein coding)|IDI2 antisense RNA 1 (non-protein coding)" 2004-04-20 2010-11-25 2012-08-15 2014-11-19 55853 ENSG00000232656 OTTHUMG00000017535 uc001ify.4 AF220183 NR_024628 Q9NZ38 24036268 615391 +HGNC:31367 IDNK IDNK, gluconokinase protein-coding gene gene with protein product Approved 9q21.32 09q21.32 "bA522I20.2|hGntK" C9orf103 "chromosome 9 open reading frame 103|idnK, gluconokinase homolog (E. coli)" 2004-06-02 2012-03-30 2016-06-09 2016-07-21 414328 ENSG00000148057 OTTHUMG00000020105 uc004amu.4 BC036421 NM_001001551 "CCDS35048|CCDS59134" Q5T6J7 "23067238|24896608|26505675" MGI:1922981 RGD:1564546 IDNK 611343 2.7.1.12 +HGNC:6059 IDO1 indoleamine 2,3-dioxygenase 1 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "IDO|INDO" indoleamine-pyrrole 2,3 dioxygenase 1993-05-26 2009-01-07 2009-01-07 2016-01-15 3620 ENSG00000131203 OTTHUMG00000164057 uc064mfz.1 M34455 NM_002164 CCDS47847 P14902 "2109605|8404046" MGI:96416 RGD:619989 IDO1 147435 objectId:2829 1.13.11.52 +HGNC:27269 IDO2 indoleamine 2,3-dioxygenase 2 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 INDOL1 indoleamine-pyrrole 2,3 dioxygenase-like 1 2006-02-14 2009-01-07 2009-01-07 2014-11-19 169355 ENSG00000188676 OTTHUMG00000141271 uc064mgi.1 AK128691 NM_194294 CCDS6114 Q6ZQW0 MGI:2142489 RGD:1596771 IDO2 612129 +HGNC:5389 IDS iduronate 2-sulfatase protein-coding gene gene with protein product Approved Xq28 Xq28 Hunter syndrome SIDS Sulfatases 410 2001-06-22 2008-08-01 2016-10-05 3423 ENSG00000010404 OTTHUMG00000022615 uc011mxe.3 M58342 NM_006123 "CCDS14685|CCDS14686" P22304 MGI:96417 RGD:1560491 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IDS IDS 300823 122569 3.1.6.13 +HGNC:5390 IDSP1 iduronate 2-sulfatase pseudogene 1 pseudogene pseudogene Approved Xq28 Xq28 IDS2 1995-07-11 2015-09-21 3424 ENSG00000176289 OTTHUMG00000022620 L36846 NG_001149 7814022 PGOHUM00000305383 +HGNC:5391 IDUA iduronidase, alpha-L- protein-coding gene gene with protein product Approved 4p16.3 04p16.3 MPS1 2001-06-22 2014-11-19 3425 ENSG00000127415 OTTHUMG00000088901 uc003gby.5 M74715 NM_000203 CCDS3343 P35475 1832239 MGI:96418 RGD:1310943 IDUA 252800 122572 3.2.1.76 +HGNC:28871 IER2 immediate early response 2 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 ETR101 2004-02-10 2014-11-19 9592 ENSG00000160888 OTTHUMG00000180790 uc002mwr.4 M62831 NM_004907 CCDS12295 Q9BTL4 2061303 MGI:104815 RGD:1359581 IER2 +HGNC:5392 IER3 immediate early response 3 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "IEX-1|DIF-2|PRG1|IEX-1L" 1999-09-30 2016-10-05 8870 ENSG00000137331 OTTHUMG00000031265 uc003nrn.4 AF083421 NM_003897 CCDS4689 P46695 "8603392|9703517" MGI:104814 RGD:1303321 IER3 602996 +HGNC:18550 IER3IP1 immediate early response 3 interacting protein 1 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 2005-01-18 2016-10-05 51124 ENSG00000134049 OTTHUMG00000132650 uc002lcu.4 AF371963 NM_016097 CCDS11933 Q9Y5U9 15276200 MGI:1913441 RGD:1561565 IER3IP1 609382 311350 +HGNC:5393 IER5 immediate early response 5 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 2000-03-03 2014-11-19 51278 ENSG00000162783 OTTHUMG00000035178 uc001got.5 BC000128 NM_016545 CCDS1343 Q5VY09 "10049588|11102586" MGI:1337072 RGD:69252 IER5 607177 +HGNC:23679 IER5L immediate early response 5 like protein-coding gene gene with protein product Approved 9q34.11 09q34.11 bA247A12.2 2004-08-23 2016-06-13 2016-06-13 389792 ENSG00000188483 OTTHUMG00000020773 uc010myt.2 BC013070 NM_203434 CCDS43888 Q5T953 MGI:1919750 RGD:1561058 IER5L +HGNC:24970 IFFO1 intermediate filament family orphan 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 HOM-TES-103 IFFO intermediate filament family orphan Intermediate filament family orphans 614 2008-02-26 2008-09-11 2008-09-11 2016-04-25 25900 ENSG00000010295 OTTHUMG00000141264 uc001qpf.3 AF124432 NM_080730 "CCDS41741|CCDS73425|CCDS8550|CCDS81655" Q0D2I5 "8771189|3052284" MGI:2444516 RGD:1308257 IFFO1 610495 +HGNC:27006 IFFO2 intermediate filament family orphan 2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 Intermediate filament family orphans 614 2008-09-11 2014-11-19 126917 ENSG00000169991 OTTHUMG00000002499 uc001bbd.3 "AK024480|AL080251" NM_001136265 CCDS44076 Q5TF58 14702039 MGI:2140675 RGD:1624207 IFFO2 +HGNC:4054 IFI6 interferon alpha inducible protein 6 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "IFI616|FAM14C|6-16|IFI-6-16" G1P3 interferon, alpha-inducible protein (clone IFI-6-16) 1990-10-16 2006-04-21 2016-03-16 2016-10-05 2537 ENSG00000126709 OTTHUMG00000003518 uc001bon.2 BC015603 NM_022873 "CCDS306|CCDS307|CCDS308" P09912 IFI6 147572 +HGNC:5395 IFI16 interferon gamma inducible protein 16 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "IFNGIP1|PYHIN2" "Pyrin domain containing|Pyrin and HIN domain family" "994|995" 1993-09-29 2016-03-16 2016-10-05 3428 ENSG00000163565 OTTHUMG00000037108 uc057mgg.1 M63838 NM_005531 "CCDS1180|CCDS58039" Q16666 "1526658|7959953" "MGI:96428|MGI:96429|MGI:101847|MGI:2138243|MGI:2138302|MGI:2442822|MGI:3041120|MGI:3584522|MGI:3646410|MGI:3695276|MGI:3780953|MGI:3840117" IFI16 147586 +HGNC:5397 IFI27 interferon alpha inducible protein 27 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "P27|FAM14D|ISG12" 1993-11-08 2016-03-16 2016-03-16 3429 ENSG00000165949 OTTHUMG00000171303 uc032bkg.2 X67325 NM_005532 CCDS32148 P40305 8358738 "MGI:1277180|MGI:1916390|MGI:1924183" IFI27 600009 +HGNC:19754 IFI27L1 interferon alpha inducible protein 27 like 1 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 FAM14B family with sequence similarity 14, member B 2002-11-25 2008-10-08 2016-03-16 2016-10-11 122509 ENSG00000165948 OTTHUMG00000171302 uc001ycl.4 BC015423 NM_206949 CCDS9919 Q96BM0 "MGI:1277180|MGI:1916390|MGI:1924183" RGD:69404 IFI27L1 611320 +HGNC:19753 IFI27L2 interferon alpha inducible protein 27 like 2 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 TLH29 FAM14A family with sequence similarity 14, member A 2002-11-25 2008-10-08 2016-03-16 2016-10-11 83982 ENSG00000119632 OTTHUMG00000171313 uc001ycq.4 AF208232 NM_032036 CCDS9920 Q9H2X8 "MGI:1277180|MGI:1916390|MGI:1924183" RGD:1559721 IFI27L2 611319 +HGNC:5398 IFI30 IFI30, lysosomal thiol reductase protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "IFI-30|GILT|IP30|MGC32056|IP-30" "gamma-interferon-inducible lysosomal thiol reductase|interferon gamma-inducible protein 30 preproprotein|legumaturain" interferon gamma inducible protein 30 1999-12-09 2016-04-28 2016-10-11 10437 ENSG00000216490 OTTHUMG00000183373 uc002nic.3 J03909 NM_006332 CCDS46015 P13284 "3136170|10639150" MGI:2137648 RGD:1310758 IFI30 604664 +HGNC:5399 IFI35 interferon induced protein 35 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 IFP35 interferon-induced protein 35 1996-04-12 2015-11-27 2016-10-05 3430 ENSG00000068079 OTTHUMG00000167720 uc060fqu.1 BC001356 NM_005533 "CCDS11450|CCDS82134" P80217 MGI:1917360 RGD:1304553 IFI35 600735 +HGNC:16938 IFI44 interferon induced protein 44 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "MTAP44|p44|TLDC5" TBC/LysM-associated domain containing 5 interferon-induced protein 44 2002-04-19 2015-11-27 2015-11-27 10561 ENSG00000137965 OTTHUMG00000009723 uc001dip.5 D28915 NM_006417 CCDS688 Q8TCB0 7925411 MGI:2443016 RGD:1310523 IFI44 610468 +HGNC:17817 IFI44L interferon induced protein 44 like protein-coding gene gene with protein product Approved 1p31.1 01p31.1 GS3686 C1orf29 "chromosome 1 open reading frame 29|interferon-induced protein 44-like" 2002-01-29 2004-11-12 2015-11-27 2016-10-05 10964 ENSG00000137959 OTTHUMG00000009724 uc010oro.2 AB000115 NM_006820 CCDS687 Q53G44 MGI:95975 RGD:1595861 IFI44L 613975 +HGNC:18873 IFIH1 interferon induced with helicase C domain 1 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "MDA-5|Hlcd|MDA5|IDDM19" "helicard|melanoma differentiation-associated gene 5" "interferon induced with helicase C domain 1|interferon induced, with helicase C domain 1" "Caspase recruitment domain containing|RNA helicases" "959|1168" 2004-06-25 2016-03-16 2016-03-16 64135 ENSG00000115267 OTTHUMG00000132055 uc002uce.5 AF095844 NM_022168 CCDS2217 Q9BYX4 MGI:1918836 RGD:1560496 IFIH1 606951 402570 +HGNC:5407 IFIT1 interferon induced protein with tetratricopeptide repeats 1 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 GARG-16 "G10P1|IFI56|IFNAI1" interferon-induced protein with tetratricopeptide repeats 1 Tetratricopeptide repeat domain containing 769 1986-01-01 2015-11-27 2015-11-27 3434 ENSG00000185745 OTTHUMG00000018712 uc001kgi.5 M24594 NM_001548 "CCDS31243|CCDS59220" P09914 "1377167|3360121" "MGI:99450|MGI:2148249|MGI:3650685" IFIT1 147690 +HGNC:23442 IFIT1B interferon induced protein with tetratricopeptide repeats 1B protein-coding gene gene with protein product Approved 10q23.31 10q23.31 bA149I23.6 IFIT1L "interferon-induced protein with tetratricopeptide repeats 1-like|interferon-induced protein with tetratricopeptide repeats 1B" Tetratricopeptide repeat domain containing 769 2004-05-27 2010-03-22 2015-11-27 2015-11-27 439996 ENSG00000204010 OTTHUMG00000018709 uc001kgh.3 NM_001010987 CCDS31242 Q5T764 "MGI:99450|MGI:2148249|MGI:3650685" RGD:620599 IFIT1B +HGNC:5408 IFIT1P1 interferon induced protein with tetratricopeptide repeats 1 pseudogene 1 pseudogene pseudogene Approved 13q13.1 13q13.1 II56P "G13P1|IFI56P|IFIT1P" "interferon-induced protein with tetratricopeptide repeats 1, pseudogene|interferon-induced protein with tetratricopeptide repeats 1 pseudogene 1" 1989-06-06 2010-03-22 2015-11-27 2015-11-27 8373 ENSG00000215515 OTTHUMG00000016693 AF196987 NG_001215 3175763 PGOHUM00000248562 +HGNC:5409 IFIT2 interferon induced protein with tetratricopeptide repeats 2 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "IFI-54|ISG-54K|cig42|GARG-39" "IFI54|G10P2" interferon-induced protein with tetratricopeptide repeats 2 Tetratricopeptide repeat domain containing 769 1989-06-06 2015-11-27 2015-11-27 3433 ENSG00000119922 OTTHUMG00000018707 uc009xts.4 M14660 NM_001547 CCDS41548 P09913 "3175763|3360121" MGI:99449 RGD:1307804 IFIT2 147040 +HGNC:5411 IFIT3 interferon induced protein with tetratricopeptide repeats 3 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "ISG60|RIG-G|CIG-49|IFI60|GARG-49|IRG2" IFIT4 "interferon-induced protein with tetratricopeptide repeats 4|interferon-induced protein with tetratricopeptide repeats 3" Tetratricopeptide repeat domain containing 769 1998-08-13 2004-07-16 2015-11-27 2015-11-27 3437 ENSG00000119917 OTTHUMG00000018708 uc001kgf.5 U52513 NM_001549 "CCDS7402|CCDS31241" O14879 "9828129|9391139" "MGI:1101055|MGI:3698419" RGD:1359681 IFIT3 604650 +HGNC:13328 IFIT5 interferon induced protein with tetratricopeptide repeats 5 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 RI58 retinoic acid- and interferon-inducible protein (58kD) interferon-induced protein with tetratricopeptide repeats 5 Tetratricopeptide repeat domain containing 769 2003-11-06 2015-11-27 2015-11-27 24138 ENSG00000152778 OTTHUMG00000018713 uc010qnh.3 U34605 NM_012420 CCDS7403 Q13325 9398535 IFIT5 616135 +HGNC:38020 IFIT6P interferon induced protein with tetratricopeptide repeats 6, pseudogene pseudogene pseudogene Approved 10q23.31 10q23.31 interferon-induced protein with tetratricopeptide repeats 6, pseudogene 2010-03-22 2015-11-27 2015-11-27 100128465 ENSG00000224289 OTTHUMG00000018711 NG_022187 PGOHUM00000238883 +HGNC:5412 IFITM1 interferon induced transmembrane protein 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "9-27|CD225" interferon-induced transmembrane protein 1 IFI17 interferon induced transmembrane protein 1 (9-27) CD molecules 471 2000-02-11 2012-03-13 2014-11-18 8519 ENSG00000185885 OTTHUMG00000165359 uc057xel.1 J04164 NM_003641 CCDS41584 P13164 7559564 MGI:1915963 IFITM1 604456 CD225 +HGNC:5413 IFITM2 interferon induced transmembrane protein 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 1-8D interferon induced transmembrane protein 2 (1-8D) 2000-02-11 2012-03-13 2015-09-02 10581 ENSG00000185201 OTTHUMG00000165357 uc001lox.5 X57351 NM_006435 CCDS41583 Q01629 1906403 MGI:1933382 RGD:69332 IFITM2 605578 +HGNC:5414 IFITM3 interferon induced transmembrane protein 3 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 1-8U interferon induced transmembrane protein 3 (1-8U) 2000-02-11 2011-05-24 2014-11-19 10410 ENSG00000142089 OTTHUMG00000165542 uc001lpa.3 X57352 NM_021034 CCDS41585 Q01628 "1906403|16326387" MGI:1913391 RGD:1595844 IFITM3 605579 +HGNC:21669 IFITM4P interferon induced transmembrane protein 4 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 dJ377H14.5 2003-11-26 2014-11-19 340198 ENSG00000235821 OTTHUMG00000031097 NR_001590 PGOHUM00000263150 +HGNC:16644 IFITM5 interferon induced transmembrane protein 5 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "fragilis4|Hrmp1|BRIL" 2006-09-21 2014-11-19 387733 ENSG00000206013 OTTHUMG00000165355 uc001low.3 "AA463818|CR747200|DY654432" NM_001025295 CCDS31323 A6NNB3 "11106657|12659663|18442316" MGI:1934923 RGD:1307900 IFITM5 614757 308058 +HGNC:32202 IFITM8P interferon induced transmembrane protein 8 pseudogene pseudogene pseudogene Approved 8q12.3 08q12.3 2005-08-26 2014-11-19 613204 ENSG00000215096 OTTHUMG00000164395 DQ031534 NG_005307 PGOHUM00000257210 +HGNC:33972 IFITM9P interferon induced transmembrane protein 9 pseudogene pseudogene pseudogene Approved 11q13.3 11q13.3 2008-01-31 2014-11-18 390218 ENSG00000213275 OTTHUMG00000167860 NG_006210 PGOHUM00000262863 +HGNC:40022 IFITM10 interferon induced transmembrane protein 10 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 2011-05-06 2016-04-25 402778 ENSG00000244242 OTTHUMG00000043933 uc021qbs.3 NM_001170820 CCDS53593 A6NMD0 MGI:2444776 RGD:1563319 IFITM10 +HGNC:5415 IFN1@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-02-06 +HGNC:5417 IFNA1 interferon alpha 1 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "IFNA@|IFL|IFN|IFN-ALPHA|IFNA13|IFN-alphaD" "IFN-alpha 1b|interferon alpha 1b" Interferons 598 1993-01-14 2016-06-13 2016-10-05 3439 ENSG00000197919 OTTHUMG00000019673 uc003zpd.2 NM_024013 CCDS6508 P01562 1385305 IFNA1 147660 +HGNC:5423 IFNA2 interferon alpha 2 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "IFNA|IFN-alphaA" "alpha-2a interferon|interferon alpha 2b|interferon alpha A" Interferons 598 1993-01-14 2016-06-13 2016-10-05 3440 ENSG00000188379 OTTHUMG00000019674 uc003zpb.4 NM_000605 CCDS6506 P01563 1385305 IFNA2 147562 +HGNC:5425 IFNA4 interferon alpha 4 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "MGC142200|IFN-alpha4a" Interferons 598 1993-01-14 2016-06-13 2016-10-05 3441 ENSG00000236637 OTTHUMG00000019660 uc003zon.3 NM_021068 CCDS6498 P05014 1385305 "MGI:107659|MGI:107661|MGI:107662|MGI:107663|MGI:107666|MGI:107668|MGI:109210|MGI:1097683|MGI:2667155|MGI:2676324|MGI:3641425|MGI:3649260|MGI:3649418" RGD:1306334 IFNA4 147564 +HGNC:5426 IFNA5 interferon alpha 5 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 IFN-alphaG interferon, alpha 5 Interferons 598 1993-01-14 2016-03-16 2016-10-05 3442 ENSG00000147873 OTTHUMG00000019664 uc011lnh.3 NM_002169 CCDS6502 P01569 1385305 IFNA5 147565 +HGNC:5427 IFNA6 interferon alpha 6 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 IFN-alphaK interferon, alpha 6 Interferons 598 1993-01-14 2016-03-16 2016-10-05 3443 ENSG00000120235 OTTHUMG00000019676 uc011lni.3 NM_021002 CCDS6504 P05013 1385305 IFNA6 147566 +HGNC:5428 IFNA7 interferon alpha 7 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "IFNA-J|IFN-alphaJ" Interferons 598 1993-01-14 2016-06-13 2016-10-05 3444 ENSG00000214042 OTTHUMG00000019662 uc003zop.1 NM_021057 CCDS34995 P01567 1385305 IFNA7 147567 +HGNC:5429 IFNA8 interferon alpha 8 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 IFN-alphaB "interferon alpha-B''|interferon alpha type 201" interferon, alpha 8 Interferons 598 1993-01-14 2016-03-16 2016-10-05 3445 ENSG00000120242 OTTHUMG00000019677 uc003zpc.1 NM_002170 CCDS6507 P32881 1385305 IFNA8 147568 +HGNC:5418 IFNA10 interferon alpha 10 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 IFN-alphaC Interferons 598 1993-01-14 2016-06-13 2016-10-05 3446 ENSG00000186803 OTTHUMG00000019658 uc003zoq.1 NM_002171 CCDS6499 P01566 1385305 IFNA10 147577 +HGNC:5442 IFNA11P interferon alpha 11, pseudogene pseudogene pseudogene Approved 9p21.3 09p21.3 IFNP11 interferon pseudogene 11 Interferons 598 1993-01-14 2010-12-10 2016-06-13 2016-06-13 3461 ENSG00000231195 OTTHUMG00000019671 NG_027866 4057246 +HGNC:5443 IFNA12P interferon alpha 12, pseudogene pseudogene pseudogene Approved 9p21.3 09p21.3 IFNP12 interferon pseudogene 12 Interferons 598 1993-01-14 2010-12-10 2016-06-13 2016-06-13 158011 ENSG00000235108 OTTHUMG00000019678 NG_004681 4057246 PGOHUM00000236406 +HGNC:5419 IFNA13 interferon alpha 13 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 Interferons 598 1993-01-14 2016-06-13 2016-10-05 3447 ENSG00000233816 OTTHUMG00000019675 uc003zpa.3 NM_006900 CCDS6505 P01562 1385305 IFNA13 147578 +HGNC:5420 IFNA14 interferon alpha 14 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "LEIF2H|IFN-alphaH" interferon, alpha 14 Interferons 598 1993-01-14 2016-03-16 2016-10-05 3448 ENSG00000228083 OTTHUMG00000019665 uc010mis.4 NM_002172 CCDS6501 P01570 1385305 IFNA14 147579 +HGNC:5421 IFNA16 interferon alpha 16 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 IFN-alphaO Interferons 598 1993-01-14 2016-06-13 2016-10-05 3449 ENSG00000147885 OTTHUMG00000019663 uc003zor.1 NM_002173 CCDS34996 P05015 1385305 IFNA16 147580 +HGNC:5422 IFNA17 interferon alpha 17 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "LEIF2C1|IFN-alphaI" Interferons 598 1993-01-14 2016-06-13 2016-10-05 3451 ENSG00000234829 OTTHUMG00000019667 uc003zos.1 NM_021268 CCDS6500 P01571 1385305 IFNA17 147583 +HGNC:5444 IFNA20P interferon alpha 20, pseudogene pseudogene pseudogene Approved 9p21.3 09p21.3 IFNP20 interferon pseudogene 20 Interferons 598 1993-01-14 2010-12-10 2016-06-13 2016-06-13 3463 ENSG00000226393 OTTHUMG00000019670 NG_027867 PGOHUM00000236405 +HGNC:5424 IFNA21 interferon alpha 21 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 IFN-alphaI leukocyte interferon protein Interferons 598 1993-01-14 2016-06-13 2016-10-05 3452 ENSG00000137080 OTTHUMG00000019653 uc003zom.2 NM_002175 CCDS6497 P01568 1385305 IFNA21 147584 +HGNC:5431 IFNA22P interferon alpha 22, pseudogene pseudogene pseudogene Approved 9p21.3 09p21.3 IFNAP22 interferon, alpha pseudogene 22 Interferons 598 1993-01-14 2010-01-08 2016-06-13 2016-10-05 3453 ENSG00000224416 OTTHUMG00000019668 V00539 NG_005640 "8001965|1385305" PGOHUM00000235992 +HGNC:5432 IFNAR1 interferon alpha and beta receptor subunit 1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 IFRC IFNAR interferon (alpha, beta and omega) receptor 1 Interferon receptors 599 1986-01-01 2016-01-29 2016-10-05 3454 ENSG00000142166 OTTHUMG00000065126 uc002yrn.4 XM_005260964 CCDS13624 P17181 8181059 MGI:107658 RGD:1305399 IFNAR1 107450 objectId:1723 +HGNC:5433 IFNAR2 interferon alpha and beta receptor subunit 2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 IFNABR interferon (alpha, beta and omega) receptor 2 Interferon receptors 599 1995-05-08 2016-01-29 2016-10-05 3455 ENSG00000159110 OTTHUMG00000065127 uc002yre.5 NM_207585 "CCDS13621|CCDS13622|CCDS74782" P48551 8181059 MGI:1098243 RGD:1583177 IFNAR2 602376 objectId:1724 +HGNC:5434 IFNB1 interferon beta 1 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "IFB|IFF" IFNB interferon, beta 1, fibroblast Interferons 598 1986-01-01 2016-03-16 2016-10-05 3456 ENSG00000171855 OTTHUMG00000019652 uc003zok.4 NM_002176 CCDS6495 P01574 MGI:107657 RGD:2865 IFNB1 147640 +HGNC:5436 IFNB3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-11 +HGNC:5437 IFNBR entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:18163 IFNE interferon epsilon protein-coding gene gene with protein product Approved 9p21.3 09p21.3 IFNE1 2008-12-12 2016-06-13 2016-10-05 338376 ENSG00000184995 OTTHUMG00000019672 uc003zpg.4 AY190045 NM_176891 CCDS34997 Q86WN2 "15546383|17287131" MGI:2667156 RGD:1565065 IFNE 615223 +HGNC:5438 IFNG interferon gamma protein-coding gene gene with protein product Approved 12q15 12q15 Interferons 598 1986-01-01 2016-06-13 2016-10-05 3458 ENSG00000111537 OTTHUMG00000169113 uc001stw.2 NM_000619 CCDS8980 P01579 MGI:107656 RGD:2866 IFNG 147570 122574 +HGNC:43910 IFNG-AS1 IFNG antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q15 12q15 "Tmevpg1|LincR-Ifng-3'AS|NEST" Theiler's murine encephalomyelitis virus persistence candidate gene 1 IFNG antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2012-05-02 2012-08-15 2015-04-30 100885789 ENSG00000255733 OTTHUMG00000169108 uc058qot.1 "AK124066|BF510189" NR_104124 "11735227|24056746" MGI:1934663 ifng-as1 +HGNC:5439 IFNGR1 interferon gamma receptor 1 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 CD119 IFNGR "CD molecules|Interferon receptors" "471|599" 1986-01-01 2016-10-12 3459 ENSG00000027697 OTTHUMG00000015656 uc003qho.3 XM_011535793 CCDS5185 P15260 MGI:107655 RGD:620570 "IFNGR1base: Mutation registry for IFNγ1-receptor deficiency|http://structure.bmc.lu.se/idbase/IFNGR1base/|LRG_66|http://www.lrg-sequence.org/LRG/LRG_66" IFNGR1 107470 122576 objectId:1725 CD119 +HGNC:5440 IFNGR2 interferon gamma receptor 2 (interferon gamma transducer 1) protein-coding gene gene with protein product Approved 21q22.11 21q22.11 AF-1 IFNGT1 "Fibronectin type III domain containing|Interferon receptors" "555|599" 1986-01-01 2016-10-12 3460 ENSG00000159128 OTTHUMG00000065188 uc002yrp.4 XM_011529554 "CCDS33544|CCDS82660" P38484 3136170 MGI:107654 RGD:1307532 "IFNGR2base: Mutation registry for IFNγ2-receptor deficiency|http://structure.bmc.lu.se/idbase/IFNGR2base/|LRG_67|http://www.lrg-sequence.org/LRG/LRG_67" IFNGR2 147569 122580 objectId:1726 +HGNC:21714 IFNK interferon kappa protein-coding gene gene with protein product Approved 9p21.2 09p21.2 interferon, kappa Interferons 598 2004-02-10 2016-03-16 2016-03-16 56832 ENSG00000147896 OTTHUMG00000019715 uc003zqp.3 AF384048 NM_020124 CCDS6521 Q9P0W0 "12391192|11514542" MGI:2683287 RGD:1309045 IFNK 615326 +HGNC:18363 IFNL1 interferon lambda 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 IL-29 IL29 "interleukin 29|interleukin 29 (interferon, lambda 1)" Interferons 598 2002-12-02 2012-11-26 2016-06-13 2016-10-11 282618 ENSG00000182393 OTTHUMG00000182807 uc002okv.4 AY129150 NM_172140 CCDS12531 Q8IU54 "MGI:3647279|MGI:2450574" 607403 +HGNC:18364 IFNL2 interferon lambda 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 IL-28A IL28A "interleukin 28A|interleukin 28A (interferon, lambda 2)" Interferons 598 2002-12-02 2012-11-26 2016-06-13 2016-10-11 282616 ENSG00000183709 OTTHUMG00000182806 uc002oku.2 AY129148 NM_172138 CCDS42567 Q8IZJ0 "MGI:3647279|MGI:2450574" 607401 +HGNC:18365 IFNL3 interferon lambda 3 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "IL-28B|IL28C" IL28B "interleukin 28B|interleukin 28B (interferon, lambda 3)" Interferons 598 2002-12-02 2012-11-26 2016-06-13 2016-10-12 282617 ENSG00000197110 OTTHUMG00000182805 uc010xuu.3 AY129149 NM_172139 CCDS12530 Q8IZI9 "MGI:3647279|MGI:2450574" RGD:1589046 LRG_1011|http://www.lrg-sequence.org/LRG/LRG_1011 607402 284108 +HGNC:44483 IFNL3P1 interferon lambda 3 pseudogene 1 pseudogene pseudogene Approved 19q13.2 19q13.2 IL28BP1 interleukin 28B (interferon, lambda 3) pseudogene 1 2012-11-07 2012-11-26 2016-06-13 2016-06-13 100421129 ENSG00000268510 OTTHUMG00000182804 NG_024181 PGOHUM00000234310 +HGNC:44480 IFNL4 interferon lambda 4 (gene/pseudogene) protein-coding gene gene with protein product Approved 19q13.2 19q13.2 IFNAN 2013-01-04 2016-06-13 2016-06-13 101180976 ENSG00000272395 OTTHUMG00000185299 uc060yjc.2 JN806234 NM_001276254 K9M1U5 23291588 RGD:6493686 615090 407416 +HGNC:45090 IFNL4P1 interferon lambda 4 pseudogene 1 pseudogene pseudogene Approved 19q13.2 19q13.2 2014-01-03 2016-06-13 2016-06-13 101927833 ENSG00000272311 OTTHUMG00000185300 +HGNC:18584 IFNLR1 interferon lambda receptor 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "CRF2/12|IFNLR|IL-28R1" IL28RA "interleukin 28 receptor, alpha|interleukin 28 receptor, alpha (interferon, lambda receptor)|interferon, lambda receptor 1" Interferon receptors 599 2002-12-02 2012-11-26 2016-03-16 2016-03-16 163702 ENSG00000185436 OTTHUMG00000003036 uc001bis.4 AY129153 NM_170743 "CCDS248|CCDS249|CCDS250" Q8IU57 MGI:2429859 RGD:1562689 607404 objectId:1733 +HGNC:32009 IFNNP1 interferon nu 1, pseudogene pseudogene pseudogene Approved 9p21.3 09p21.3 interferon, nu 1 (pseudogene) Interferons 598 2006-02-09 2016-06-13 2016-06-13 654783 ENSG00000230208 OTTHUMG00000019655 AL390882 NG_009495 15922016 PGOHUM00000235986 +HGNC:5445 IFNP23 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-01-13 +HGNC:5446 IFNP24 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-01-13 +HGNC:5447 IFNR interferon production regulator other unknown Approved 16 16 1986-01-01 2011-02-24 3466 "1906174|1193239" 147573 +HGNC:5448 IFNW1 interferon omega 1 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 IFN-omega 1, interferon omega-1 Interferons 598 1992-11-06 2016-06-13 2016-10-05 3467 ENSG00000177047 OTTHUMG00000019656 uc003zol.2 NM_002177 CCDS6496 P05000 1385305 IFNW1 147553 +HGNC:5452 IFNWP2 interferon omega 1 pseudogene 2 pseudogene pseudogene Approved 9p21.3 09p21.3 interferon, omega 2 (pseudogene) Interferons 598 1993-01-14 2016-06-13 2016-06-13 646581 ENSG00000237691 OTTHUMG00000019679 NG_011585 8001965 +HGNC:5453 IFNWP4 interferon omega 1 pseudogene 4 pseudogene pseudogene Approved 9p21.3 09p21.3 interferon, omega 4 (pseudogene) Interferons 598 1993-01-14 2016-06-13 2016-06-13 ENSG00000225027 OTTHUMG00000019654 PGOHUM00000236404 +HGNC:5454 IFNWP5 interferon omega 1 pseudogene 5 pseudogene pseudogene Approved 9p21.3 09p21.3 interferon, omega 5 (pseudogene) Interferons 598 1993-01-14 2016-06-13 2016-06-13 392292 ENSG00000232138 OTTHUMG00000019666 NG_016582 8001965 +HGNC:5455 IFNWP9 interferon omega 1 pseudogene 9 pseudogene pseudogene Approved 9p21.3 09p21.3 interferon, omega 9 (pseudogene) Interferons 598 1993-01-14 2016-06-13 2016-06-13 100130671 ENSG00000226597 OTTHUMG00000019659 NG_016396 "1385305|8001965" +HGNC:5449 IFNWP15 interferon omega 1 pseudogene 15 pseudogene pseudogene Approved 9p21.3 09p21.3 interferon, omega 15 (pseudogene) Interferons 598 1993-01-14 2016-06-13 2016-06-13 100130866 ENSG00000232281 OTTHUMG00000019657 NG_001150 3857460 +HGNC:5450 IFNWP18 interferon omega 1 pseudogene 18 pseudogene pseudogene Approved 9p21.3 09p21.3 pseudo-IFN-alpha-m interferon, omega 18 (pseudogene) Interferons 598 1993-01-14 2016-06-13 2016-06-13 360001 ENSG00000223684 OTTHUMG00000019661 V00531 NG_002922 1385305 +HGNC:5451 IFNWP19 interferon omega 1 pseudogene 19 pseudogene pseudogene Approved 9p21.3 09p21.3 interferon, omega 19 (pseudogene) Interferons 598 1993-01-14 2016-06-13 2016-06-13 3474 ENSG00000238271 OTTHUMG00000019680 NG_005641 1385305 PGOHUM00000236408 +HGNC:5456 IFRD1 interferon related developmental regulator 1 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 "PC4|TIS7" interferon-related developmental regulator 1 1998-01-21 2016-02-03 2016-02-03 3475 ENSG00000006652 OTTHUMG00000155124 uc003vgh.4 Y10313 NM_001550 "CCDS34736|CCDS56504" O00458 9722946 MGI:1316717 RGD:2867 IFRD1 603502 201522 +HGNC:5457 IFRD2 interferon related developmental regulator 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "SKMc15|SM15|IFNRP" interferon-related protein 1998-09-25 2016-06-28 2016-10-05 7866 ENSG00000214706 OTTHUMG00000156935 uc062kcu.1 U09585 NM_006764 CCDS77746 Q12894 9050919 MGI:1316708 RGD:1310222 IFRD2 602725 +HGNC:30989 IFT20 intraflagellar transport 20 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 intraflagellar transport 20 homolog (Chlamydomonas) Intraflagellar transport proteins 615 2005-11-02 2014-07-03 2014-11-18 90410 ENSG00000109083 OTTHUMG00000179412 uc002haw.3 AF070643 NM_174887 "CCDS32593|CCDS58533|CCDS58534|CCDS58535|CCDS74017" Q8IY31 MGI:1915585 RGD:1309400 IFT20 614394 +HGNC:21895 IFT22 intraflagellar transport 22 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "FLJ14117|FLJ13225|DKFZp761N0823" RABL5 "RAB, member RAS oncogene family-like 5|intraflagellar transport 22 homolog (Chlamydomonas)" "RAB like GTPases|Intraflagellar transport proteins" "394|615" 2004-01-29 2014-03-06 2014-07-03 2014-11-19 64792 ENSG00000128581 OTTHUMG00000157136 AK024179 NM_022777 "CCDS5719|CCDS47670|CCDS47671" Q9H7X7 "19240117|22076686" MGI:1914536 RGD:1305370 +HGNC:18626 IFT27 intraflagellar transport 27 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "RAYL|BBS19" RABL4 "RAB, member of RAS oncogene family-like 4|intraflagellar transport 27 homolog (Chlamydomonas)" "RAB, member RAS oncogene GTPases|Intraflagellar transport proteins|Bardet-Biedl syndrome associated" "388|615|980" 2002-05-09 2010-04-22 2014-07-03 2016-10-05 11020 ENSG00000100360 OTTHUMG00000150544 uc003apu.4 Z80897 NM_006860 "CCDS13932|CCDS54523" Q9BW83 "12529303|17276912" MGI:1914292 RGD:1308703 IFT27 615870 404768 +HGNC:29669 IFT43 intraflagellar transport 43 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "FLJ32173|MGC16028" C14orf179 "chromosome 14 open reading frame 179|intraflagellar transport 43 homolog (Chlamydomonas)" Intraflagellar transport proteins 615 2006-06-19 2011-06-09 2014-07-03 2014-11-19 112752 ENSG00000119650 uc010asm.1 BC010436 NM_052873 "CCDS9847|CCDS41973|CCDS58330" Q96FT9 21378380 MGI:1923661 RGD:1307392 IFT43 614068 270002 +HGNC:26146 IFT46 intraflagellar transport 46 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "C11orf2|FLJ21827|CFAP32" cilia and flagella associated protein 32 C11orf60 "chromosome 11 open reading frame 60|intraflagellar transport 46 homolog (Chlamydomonas)" Intraflagellar transport proteins 615 2006-03-09 2010-04-22 2014-07-03 2014-11-19 56912 ENSG00000118096 OTTHUMG00000166408 uc001ptp.2 AL136934 NM_020153 "CCDS8399|CCDS53718" Q9NQC8 "10873569|19253336" MGI:1923818 RGD:1307682 IFT46 +HGNC:15901 IFT52 intraflagellar transport 52 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "CGI-53|NGD5|dJ1028D15.1|NGD2" C20orf9 "chromosome 20 open reading frame 9|intraflagellar transport 52 homolog (Chlamydomonas)" Intraflagellar transport proteins 615 2001-06-21 2005-11-02 2014-07-03 2016-10-05 51098 ENSG00000101052 OTTHUMG00000032513 uc002xkw.4 AF151811 NM_016004 CCDS33470 Q9Y366 10810093 MGI:2387217 RGD:1311004 IFT52 617094 +HGNC:17367 IFT57 intraflagellar transport 57 protein-coding gene gene with protein product Approved 3q13.12-q13.13 03q13.12-q13.13 "FLJ10147|HIPPI|MHS4R2" ESRRBL1 "estrogen-related receptor beta like 1|intraflagellar transport 57 homolog (Chlamydomonas)" Intraflagellar transport proteins 615 2002-01-18 2005-11-02 2014-07-03 2016-10-11 55081 ENSG00000114446 OTTHUMG00000159223 uc003dwx.4 AK001009 NM_018010 CCDS2951 Q9NWB7 MGI:1921166 RGD:1305947 IFT57 606621 +HGNC:21424 IFT74 intraflagellar transport 74 protein-coding gene gene with protein product Approved 9p21.2 09p21.2 "CMG1|CMG-1|FLJ22621" capillary morphogenesis protein 1 CCDC2 "coiled-coil domain containing 2|intraflagellar transport 74 homolog (Chlamydomonas)" Intraflagellar transport proteins 615 2003-09-25 2005-11-02 2014-07-03 2016-10-05 80173 ENSG00000096872 OTTHUMG00000021028 uc010mja.4 AK023707 NM_025103 "CCDS43793|CCDS47955" Q96LB3 11683410 MGI:1914944 RGD:1359704 IFT74 608040 +HGNC:49806 IFT74-AS1 IFT74 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p21.2 09p21.2 2014-03-06 2014-03-06 101929602 ENSG00000234676 OTTHUMG00000019709 "AA960898|AI214381" NR_121605 +HGNC:29262 IFT80 intraflagellar transport 80 protein-coding gene gene with protein product Approved 3q25.33 03q25.33 KIAA1374 WDR56 "WD repeat domain 56|intraflagellar transport 80 homolog (Chlamydomonas)" "WD repeat domain containing|Intraflagellar transport proteins" "362|615" 2005-02-25 2005-11-02 2014-07-03 2014-11-19 57560 ENSG00000068885 OTTHUMG00000158953 uc062pnb.1 AB037795 NM_020800 "CCDS3188|CCDS54668" Q9P2H3 10718198 MGI:1915509 RGD:1312006 IFT80 611177 160278 +HGNC:14313 IFT81 intraflagellar transport 81 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "CDV-1R|MGC4027" CDV1 "carnitine deficiency-associated, expressed in ventricle 1|intraflagellar transport 81 homolog (Chlamydomonas)" Intraflagellar transport proteins 615 2001-01-04 2005-11-02 2014-07-03 2016-10-11 28981 ENSG00000122970 OTTHUMG00000169326 uc001tqi.4 AF139540 NM_014055 "CCDS9142|CCDS41831" Q8WYA0 11130971 MGI:1098597 RGD:727862 IFT81 605489 +HGNC:20606 IFT88 intraflagellar transport 88 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "hTg737|Tg737|D13S1056E|MGC26259" polaris homolog TTC10 "tetratricopeptide repeat domain 10|intraflagellar transport 88 homolog (Chlamydomonas)" "Intraflagellar transport proteins|Tetratricopeptide repeat domain containing" "615|769" 2004-04-16 2005-11-02 2014-07-03 2016-10-05 8100 ENSG00000032742 OTTHUMG00000016517 uc001uni.4 AK058172 NM_006531 "CCDS31944|CCDS31945" Q13099 7633404 MGI:98715 RGD:1309717 IFT88 600595 +HGNC:13556 IFT122 intraflagellar transport 122 protein-coding gene gene with protein product Approved 3q21.3-q22.1 03q21.3-q22.1 "WDR140|WDR10p|SPG" WDR10 "WD repeat domain 10|intraflagellar transport 122 homolog (Chlamydomonas)" "WD repeat domain containing|Intraflagellar transport proteins" "362|615" 2001-04-05 2005-11-02 2014-07-03 2016-10-11 55764 ENSG00000163913 OTTHUMG00000159516 uc003emm.5 AF244930 NM_018262 "CCDS3059|CCDS3060|CCDS3061|CCDS3062|CCDS63770|CCDS63772|CCDS63773" Q9HBG6 11242542 MGI:1932386 RGD:1311302 IFT122 606045 235207 +HGNC:29077 IFT140 intraflagellar transport 140 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "gs114|KIAA0590" WDTC2 "WD and tetratricopeptide repeats 2|intraflagellar transport 140 homolog (Chlamydomonas)" "WD repeat domain containing|Intraflagellar transport proteins" "362|615" 2005-05-26 2005-11-02 2014-07-03 2014-11-19 9742 ENSG00000187535 OTTHUMG00000128585 uc002cmb.4 AB011162 NM_014714 CCDS10439 Q96RY7 9628581 MGI:2146906 RGD:2318759 IFT140 614620 302892 +HGNC:30391 IFT172 intraflagellar transport 172 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "SLB|wim|osm-1|NPHP17|BBS20" wimple homolog intraflagellar transport 172 homolog (Chlamydomonas) "WD repeat domain containing|Intraflagellar transport proteins|Bardet-Biedl syndrome associated" "362|615|980" 2005-11-02 2014-07-03 2016-04-22 26160 ENSG00000138002 OTTHUMG00000128425 uc002rku.4 AB033005 NM_015662 CCDS1755 Q9UG01 "10788441|10574461|24140113|26763875" MGI:2682064 RGD:620744 IFT172 607386 371219 +HGNC:5459 IGAD1 immunoglobulin A (IgA) deficiency susceptibility 1 phenotype phenotype only Approved 6p21.3 06p21.3 1999-08-11 2014-02-03 10986 "10090895|16328471" 137100 +HGNC:5461 IGBP1 immunoglobulin (CD79A) binding protein 1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 alpha 4 IBP1 Protein phosphatase 2 modulatory subunits 1265 1997-09-05 2016-10-05 3476 ENSG00000089289 OTTHUMG00000021767 uc004dxv.4 Y08915 XM_017029489 CCDS14396 P78318 9441740 MGI:1346500 RGD:62011 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IGBP1 IGBP1 300139 122584 +HGNC:40295 IGBP1-AS1 IGBP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq13.1 Xq13.1 IGBP1 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100873991 ENSG00000203588 OTTHUMG00000021766 uc064zsd.1 +HGNC:40294 IGBP1-AS2 IGBP1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved Xq13.1 Xq13.1 IGBP1 antisense RNA 2 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 106478965 ENSG00000220925 OTTHUMG00000021762 uc064zsc.1 +HGNC:19709 IGBP1P1 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudogene pseudogene Approved 14q13.2 14q13.2 C14orf19 chromosome 14 open reading frame 19 2002-11-18 2011-11-25 2011-11-25 2011-11-25 280655 ENSG00000226677 OTTHUMG00000170820 AY168620 NR_002937 15820313 PGOHUM00000248129 +HGNC:43611 IGBP1P2 immunoglobulin (CD79A) binding protein 1 pseudogene 2 pseudogene pseudogene Approved 17q22 17q22 2011-11-25 2011-11-25 645545 NG_012738 PGOHUM00000259190 +HGNC:43612 IGBP1P3 immunoglobulin (CD79A) binding protein 1 pseudogene 3 pseudogene pseudogene Approved 3p22.3 03p22.3 2011-11-25 2011-11-25 391526 ENSG00000231552 OTTHUMG00000155898 NG_022199 PGOHUM00000237574 +HGNC:43613 IGBP1P4 immunoglobulin (CD79A) binding protein 1 pseudogene 4 pseudogene pseudogene Approved 4q21.22 04q21.22 2011-11-25 2011-11-25 391672 ENSG00000250325 OTTHUMG00000160978 NG_022017 PGOHUM00000245612 +HGNC:43614 IGBP1P5 immunoglobulin (CD79A) binding protein 1 pseudogene 5 pseudogene pseudogene Approved 4p15.2 04p15.2 2011-11-25 2011-11-25 391642 ENSG00000250858 OTTHUMG00000160327 NG_022053 PGOHUM00000245871 +HGNC:9700 IGDCC3 immunoglobulin superfamily DCC subclass member 3 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 HsT18880 PUNC putative neuronal cell adhesion molecule "Fibronectin type III domain containing|I-set domain containing" "555|593" 1999-06-09 2009-01-08 2016-04-28 2016-04-28 9543 ENSG00000174498 OTTHUMG00000133137 uc002aos.2 AF063936 NM_004884 CCDS10205 Q8IVU1 9922388 MGI:1202390 RGD:1307338 IGDCC3 604184 +HGNC:13770 IGDCC4 immunoglobulin superfamily DCC subclass member 4 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "NOPE|LOC57722" likely ortholog of mouse neighbor of Punc E11 immunoglobulin superfamily, DCC subclass, member 4 "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2009-01-08 2016-04-28 2016-04-28 57722 ENSG00000103742 OTTHUMG00000133136 uc002aou.2 NM_020962 CCDS10206 Q8TDY8 MGI:1858497 RGD:1310919 IGDCC4 616810 +HGNC:5463 IGES immunoglobulin E concentration, serum phenotype phenotype only Approved 5q31.1 05q31.1 1994-07-20 2009-12-16 3478 8178175 147061 +HGNC:5464 IGF1 insulin like growth factor 1 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 "IGF1A|IGFI|IGF-I" somatomedin C insulin-like growth factor 1 (somatomedin C) Endogenous ligands 542 1986-01-01 2015-11-23 2015-11-23 3479 ENSG00000017427 OTTHUMG00000149910 uc001tjo.3 X00173 NM_000618 "CCDS9091|CCDS44960|CCDS44961" P05019 "2982726|6358902" MGI:96432 RGD:2868 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/growth/home.php?select_db=IGF1 IGF1 147440 122587 +HGNC:5465 IGF1R insulin like growth factor 1 receptor protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "JTK13|CD221|IGFIR|MGC18216|IGFR" insulin-like growth factor 1 receptor "Receptor Tyrosine Kinases|CD molecules|Fibronectin type III domain containing" "321|471|555" 1988-07-07 2015-11-23 2016-10-12 3480 ENSG00000140443 OTTHUMG00000149851 uc002bul.4 M69229 NM_000875 "CCDS10378|CCDS73785" P08069 1316909 MGI:96433 RGD:2869 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/growth/home.php?select_db=IGF1R|LRG_1055|http://www.lrg-sequence.org/LRG/LRG_1055" IGF1R 147370 138578 objectId:1801 CD221 +HGNC:5466 IGF2 insulin like growth factor 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "FLJ44734|IGF-II" "somatomedin A|preptin" C11orf43 "chromosome 11 open reading frame 43|insulin-like growth factor 2" 2001-06-22 2015-11-23 2016-10-12 3481 ENSG00000167244 OTTHUMG00000009395 uc001lvg.4 "M29645|AK025719" NM_000612 "CCDS7728|CCDS44517" P01344 "2450353|3167054" MGI:96434 RGD:2870 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/growth/home.php?select_db=IGF2|LRG_1031|http://www.lrg-sequence.org/LRG/LRG_1031" IGF2 147470 159729 +HGNC:14062 IGF2-AS IGF2 antisense RNA non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 "PEG8|IGF2-AS1" "insulin-like growth factor 2 antisense 1 (non-protein coding)|IGF2 antisense RNA 1 (non-protein coding)" IGF2AS "insulin-like growth factor 2, antisense|IGF2 antisense RNA (non-protein coding)" Long non-coding RNAs 788 2000-11-28 2012-04-04 2012-08-15 2014-11-19 51214 ENSG00000099869 OTTHUMG00000009557 uc001lvk.3 AB030733 NM_016412 Q6U949 10731720 610146 IGF2AS +HGNC:28866 IGF2BP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 IMP-1 IGF II mRNA binding protein 1 insulin-like growth factor 2 mRNA binding protein 1 RNA binding motif containing 725 2006-02-09 2015-11-23 2015-11-23 10642 ENSG00000159217 OTTHUMG00000161173 uc002iom.4 AF198254 NM_006546 "CCDS11543|CCDS54138" Q9NZI8 "9891060|11992722" MGI:1890357 RGD:708580 IGF2BP1 608288 +HGNC:28867 IGF2BP2 insulin like growth factor 2 mRNA binding protein 2 protein-coding gene gene with protein product Approved 3q27.2 03q27.2 IMP-2 IGF II mRNA binding protein 2 insulin-like growth factor 2 mRNA binding protein 2 RNA binding motif containing 725 2006-02-09 2015-11-23 2015-11-23 10644 ENSG00000073792 OTTHUMG00000074025 uc003fpo.4 BC021290 NM_006548 "CCDS3273|CCDS33903|CCDS77869|CCDS77870" Q9Y6M1 "10190901|9891060" MGI:1890358 RGD:1305614 IGF2BP2 608289 +HGNC:32674 IGF2BP2-AS1 IGF2BP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.2 03q27.2 FLJ32900 C3orf65 chromosome 3 open reading frame 65 2006-03-30 2014-10-01 2014-10-01 2014-11-19 646600 ENSG00000163915 OTTHUMG00000156643 AK057462 NR_027317 Q96M15 +HGNC:28868 IGF2BP3 insulin like growth factor 2 mRNA binding protein 3 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "IMP-3|CT98|IMP3" "IGF II mRNA binding protein 3|cancer/testis antigen 98" insulin-like growth factor 2 mRNA binding protein 3 RNA binding motif containing 725 2006-02-09 2015-11-23 2015-11-23 10643 ENSG00000136231 OTTHUMG00000128445 uc003swg.4 AF117108 NM_006547 CCDS5382 O00425 "9891060|9178771" MGI:1890359 RGD:1306512 IGF2BP3 608259 +HGNC:5467 IGF2R insulin like growth factor 2 receptor protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "CD222|MPRI|MPR1|CIMPR|M6P-R|CI-M6PR|CI-MPR|MPR300" cation-independent mannose-6 phosphate receptor insulin-like growth factor 2 receptor "CD molecules|MRH domain containing " "471|1233" 1988-07-07 2015-11-23 2016-10-12 3482 ENSG00000197081 OTTHUMG00000015945 uc003qta.4 J03528 NM_000876 CCDS5273 P11717 MGI:96435 RGD:2871 LRG_1036|http://www.lrg-sequence.org/LRG/LRG_1036 IGF2R 147280 CD222 +HGNC:5468 IGFALS insulin like growth factor binding protein acid labile subunit protein-coding gene gene with protein product Approved 16p13.3 16p13.3 ALS insulin-like growth factor binding protein, acid labile subunit 1997-11-28 2015-11-23 2015-11-23 3483 ENSG00000099769 OTTHUMG00000128638 uc002cmy.4 M86826 NM_004970 "CCDS10446|CCDS53982" P35858 "1379671|16114275" MGI:107973 RGD:68429 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/growth/home.php?select_db=IGFALS IGFALS 601489 159982 +HGNC:5469 IGFBP1 insulin like growth factor binding protein 1 protein-coding gene gene with protein product Approved 7p12.3 07p12.3 "IGF-BP25|AFBP|hIGFBP-1|PP12" "placental protein 12|amniotic fluid binding protein|alpha-pregnancy-associated endometrial globulin|growth hormone independent-binding protein|binding protein-28|binding protein-26|binding protein-25|IGF-binding protein 1" IBP1 insulin-like growth factor binding protein 1 Insulin like growth factor binding proteins 1065 1988-11-30 2015-11-12 2015-11-12 3484 ENSG00000146678 OTTHUMG00000152343 uc003tnp.4 NM_000596 CCDS5504 P08833 2461294 MGI:96436 RGD:2872 IGFBP1 146730 I31.951 +HGNC:5471 IGFBP2 insulin like growth factor binding protein 2 protein-coding gene gene with protein product Approved 2q35 02q35 IBP2 "insulin-like growth factor binding protein 2 (36kD)|insulin-like growth factor binding protein 2, 36kDa|insulin-like growth factor binding protein 2" Insulin like growth factor binding proteins 1065 1991-07-09 2015-11-12 2015-11-12 3485 ENSG00000115457 OTTHUMG00000155341 uc061sgd.1 NM_000597 "CCDS42815|CCDS82570" P18065 1697583 MGI:96437 RGD:2873 IGFBP2 146731 I31.953 +HGNC:5472 IGFBP3 insulin like growth factor binding protein 3 protein-coding gene gene with protein product Approved 7p12.3 07p12.3 "IBP3|BP-53" "growth hormone-dependent binding protein|acid stable subunit of the 140 K IGF complex|binding protein 53|binding protein 29|IGF-binding protein 3" insulin-like growth factor binding protein 3 Insulin like growth factor binding proteins 1065 1991-07-09 2015-11-12 2016-10-12 3486 ENSG00000146674 OTTHUMG00000023769 uc003tns.4 NM_001013398 "CCDS5505|CCDS34632" P17936 1695633 MGI:96438 RGD:2874 LRG_68|http://www.lrg-sequence.org/LRG/LRG_68 IGFBP3 146732 I31.952 +HGNC:5473 IGFBP4 insulin like growth factor binding protein 4 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "IBP4|BP-4|HT29-IGFBP|IGFBP-4" IGF-binding protein 4 "insulin-like growth factor-binding protein 4|insulin-like growth factor binding protein 4" Insulin like growth factor binding proteins 1065 1991-07-09 2015-11-12 2015-11-12 3487 ENSG00000141753 OTTHUMG00000133326 uc002hus.4 M38177 NM_001552 CCDS11367 P22692 "1707125|1704481" MGI:96439 RGD:2875 IGFBP4 146733 I31.952 +HGNC:5474 IGFBP5 insulin like growth factor binding protein 5 protein-coding gene gene with protein product Approved 2q35 02q35 insulin-like growth factor binding protein 5 Insulin like growth factor binding proteins 1065 1991-07-09 2015-11-12 2015-11-12 3488 ENSG00000115461 OTTHUMG00000133058 uc002vgj.5 NM_000599 CCDS2405 P24593 7511611 MGI:96440 RGD:2876 IGFBP5 146734 I31.952 +HGNC:5475 IGFBP6 insulin like growth factor binding protein 6 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 insulin-like growth factor binding protein 6 Insulin like growth factor binding proteins 1065 1991-07-09 2015-11-12 2016-10-05 3489 ENSG00000167779 OTTHUMG00000169773 uc001sbu.2 XM_017019264 CCDS8846 P24592 "1850258|10087296" MGI:96441 RGD:2877 IGFBP6 146735 I31.952 +HGNC:5476 IGFBP7 insulin like growth factor binding protein 7 protein-coding gene gene with protein product Approved 4q12 04q12 "MAC25|IGFBP-7|PSF|FSTL2" insulin-like growth factor binding protein 7 I-set domain containing 593 1998-03-02 2015-11-12 2015-11-12 3490 ENSG00000163453 OTTHUMG00000128772 uc003hcn.4 S75725 NM_001553 "CCDS3512|CCDS58900" Q16270 "7694637|7980422" MGI:1352480 RGD:1306201 IGFBP7 602867 284258 +HGNC:40296 IGFBP7-AS1 IGFBP7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q12 04q12 2013-09-17 2014-11-19 255130 ENSG00000245067 OTTHUMG00000161143 NR_034081 +HGNC:20081 IGFBPL1 insulin like growth factor binding protein like 1 protein-coding gene gene with protein product Approved 9p13.1 09p13.1 bA113O24.1 "insulin-like growth factor binding protein-like 1|insulin like growth factor binding protein-like 1" I-set domain containing 593 2004-04-16 2016-06-09 2016-10-05 347252 ENSG00000137142 OTTHUMG00000019937 uc004aaz.4 XM_294567 CCDS35017 Q8WX77 MGI:1933198 RGD:1305656 IGFBPL1 610413 +HGNC:24093 IGFL1 IGF like family member 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 UNQ644 2006-07-14 2015-11-13 2015-11-13 374918 ENSG00000188293 OTTHUMG00000182501 uc002pee.3 AY359013 NM_198541 CCDS46123 Q6UW32 12975309 IGFL1 610544 +HGNC:32956 IGFL1P1 IGF like family member 1 pseudogene 1 pseudogene pseudogene Approved 19q13.32 19q13.32 IGFL-5P 2006-07-14 2015-11-13 2016-07-26 727703 ENSG00000268879 OTTHUMG00000182497 NG_028705 16890402 PGOHUM00000295392 +HGNC:32957 IGFL1P2 IGF like family member 1 pseudogene 2 pseudogene pseudogene Approved 19q13.32 19q13.32 IGFL-6P 2006-07-14 2015-11-13 2016-07-26 727704 ENSG00000268238 OTTHUMG00000182502 NG_028698 16890402 PGOHUM00000295053 +HGNC:32929 IGFL2 IGF like family member 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 UNQ645 2006-07-14 2015-11-13 2016-07-25 147920 ENSG00000204866 OTTHUMG00000182492 uc002peb.4 AY672112 NM_001002915 "CCDS46121|CCDS46122" Q6UWQ7 14702039 IGFL2 610545 +HGNC:32930 IGFL3 IGF like family member 3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 UNQ483 2006-07-14 2015-11-13 2016-07-25 388555 ENSG00000188624 OTTHUMG00000172904 uc002pea.1 AY358434 NM_207393 CCDS33058 Q6UXB1 14702039 MGI:2685426 RGD:2324129 IGFL3 610546 +HGNC:32931 IGFL4 IGF like family member 4 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 2006-07-14 2015-11-13 2015-11-13 444882 ENSG00000204869 OTTHUMG00000182491 uc002pdy.1 AY672114 NM_001002923 CCDS33057 Q6B9Z1 14702039 IGFL4 610547 +HGNC:23620 IGFLR1 IGF like family receptor 1 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ22573 "U2AF1L4|TMEM149" "U2(RNU2) small nuclear RNA auxiliary factor 1-like 4|transmembrane protein 149" 2003-11-28 2011-04-04 2015-11-13 2015-11-13 79713 ENSG00000126246 OTTHUMG00000182064 uc002obd.5 AK026226 NM_024660 CCDS12472 Q9H665 21454693 MGI:3655979 RGD:1563574 IGFLR1 614143 +HGNC:24607 IGFN1 immunoglobulin-like and fibronectin type III domain containing 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "DKFZp434B1231|EEF1A2BP1" "Fibronectin type III domain containing|I-set domain containing" "555|593" 2008-02-21 2014-11-19 91156 ENSG00000163395 OTTHUMG00000035728 uc001gwc.3 AY245430 NM_178275 CCDS53455 Q86VF2 MGI:3045352 RGD:1565384 IGFN1 +HGNC:5477 IGH immunoglobulin heavy locus protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "IGHDY1|IGH@" Immunoglobulin heavy locus at 14q32.33 349 1989-06-30 2013-03-05 2013-03-05 3492 NG_001019 "146910|147010|147070" 201163 +HGNC:5478 IGHA1 immunoglobulin heavy constant alpha 1 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2014-11-19 3493 ENSG00000211895 OTTHUMG00000152494 uc059gcy.1 J00220 NG_001019 P01876 146900 IGHA1 +HGNC:5479 IGHA2 immunoglobulin heavy constant alpha 2 (A2m marker) other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2014-11-19 3494 ENSG00000211890 OTTHUMG00000152472 uc059gck.1 J00221 NG_001019 P01877 147000 IGHA2 +HGNC:5480 IGHD immunoglobulin heavy constant delta other immunoglobulin gene Approved 14q32.33 14q32.33 "FLJ00382|FLJ46727|MGC29633" "immunoglobulin delta|constant region of heavy chain of IgD" Immunoglobulin heavy locus at 14q32.33 349 1988-10-01 2014-11-19 3495 ENSG00000211898 OTTHUMG00000152538 uc059gdn.1 K02875 NG_001019 P01880 3922054 IMGT; the international ImMunoGeneTics information system ®|http://www.imgt.org 147170 IGHD +HGNC:5482 IGHD1-1 immunoglobulin heavy diversity 1-1 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD11 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28510 ENSG00000236170 OTTHUMG00000152359 uc059gfi.1 X97051 NG_001019 3138112 IGHD1-1 +HGNC:5486 IGHD1-7 immunoglobulin heavy diversity 1-7 other immunoglobulin gene Approved 14q32.33 14q32.33 "DM1|IGHD17" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-18 28509 ENSG00000237197 OTTHUMG00000152357 uc059gfa.1 X13972 NG_001019 3243276 IGHD1-7 +HGNC:5483 IGHD1-14 immunoglobulin heavy diversity 1-14 (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD114|DM2" immunoglobulin heavy diversity 1-14 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-09-12 2014-11-18 28508 ENSG00000227108 OTTHUMG00000152369 uc059get.1 X13972 NG_001019 3243276 IGHD1-14 +HGNC:5484 IGHD1-20 immunoglobulin heavy diversity 1-20 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD120 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28507 ENSG00000237020 OTTHUMG00000152432 uc059gem.1 X97051 NG_001019 3138112 IGHD1-20 +HGNC:5485 IGHD1-26 immunoglobulin heavy diversity 1-26 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD126 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28506 ENSG00000211907 OTTHUMG00000152429 uc059gef.1 X97051 NG_001019 IGHD1-26 +HGNC:5487 IGHD1OR15-1A immunoglobulin heavy diversity 1/OR15-1A (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD1/OR15-1A|IGHD1OR151A" immunoglobulin heavy diversity 1/OR15-1A Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2013-12-06 28335 ENSG00000271336 OTTHUMG00000184580 uc059got.1 X55575 IGHD1/OR15-1a +HGNC:5488 IGHD1OR15-1B immunoglobulin heavy diversity 1/OR15-1B (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD1/OR15-1B|IGHD1OR151B" immunoglobulin heavy diversity 1/OR15-1B Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2013-12-06 28334 ENSG00000270185 OTTHUMG00000184585 uc059gpu.1 X55576 2114977 IGHD1/OR15-1b +HGNC:5490 IGHD2-2 immunoglobulin heavy diversity 2-2 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD22 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28505 ENSG00000211931 OTTHUMG00000152356 uc059gff.1 J00232 NG_001019 "7312051|3138112" IGHD2-2 +HGNC:5492 IGHD2-8 immunoglobulin heavy diversity 2-8 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD28|DLR1" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-18 28504 ENSG00000211925 OTTHUMG00000152361 uc059gez.1 X13972 NG_001019 3243276 IGHD2-8 +HGNC:5489 IGHD2-15 immunoglobulin heavy diversity 2-15 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD215|D2" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28503 ENSG00000211918 OTTHUMG00000152430 uc059ges.1 J00234 NG_001019 7312051 IGHD2-15 +HGNC:5491 IGHD2-21 immunoglobulin heavy diversity 2-21 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD221 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-18 28502 ENSG00000211912 OTTHUMG00000152428 uc059gek.1 J00235 NG_001019 7312051 IGHD2-21 +HGNC:5493 IGHD2OR15-2A immunoglobulin heavy diversity 2/OR15-2A (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD2/OR15-2A|IGHD2OR152A" immunoglobulin heavy diversity 2/OR15-2A Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2015-07-24 28333 ENSG00000282599 OTTHUMG00000184594 uc059gos.1 X55577 2114977 IGHD2/OR15-2a +HGNC:5494 IGHD2OR15-2B immunoglobulin heavy diversity 2/OR15-2B (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD2/OR15-2B|IGHD2OR152B" immunoglobulin heavy diversity 2/OR15-2B Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2015-07-24 28332 ENSG00000282268 OTTHUMG00000184595 uc059gpt.1 X55578 2114977 IGHD2/OR15-2b +HGNC:5498 IGHD3-3 immunoglobulin heavy diversity 3-3 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD33|DXP4" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28501 ENSG00000211930 OTTHUMG00000152358 uc059gfe.1 X13972 NG_001019 3243276 611937 IGHD3-3 +HGNC:5499 IGHD3-9 immunoglobulin heavy diversity 3-9 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD39|DXP1" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-18 28500 ENSG00000211924 OTTHUMG00000152352 uc059gey.1 X13972 NG_001019 3243276 IGHD3-9 +HGNC:5495 IGHD3-10 immunoglobulin heavy diversity 3-10 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD310|DXP'1" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-18 28499 ENSG00000211923 OTTHUMG00000152354 uc059gex.1 X13972 NG_001019 3243276 IGHD3-10 +HGNC:5496 IGHD3-16 immunoglobulin heavy diversity 3-16 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD316 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28498 ENSG00000211917 OTTHUMG00000152439 uc059ger.1 X93614 NG_001019 3138112 IGHD3-16 +HGNC:5497 IGHD3-22 immunoglobulin heavy diversity 3-22 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD322 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28497 ENSG00000211911 OTTHUMG00000152434 uc059gej.1 X93616 NG_001019 3138112 IGHD3-22 +HGNC:5500 IGHD3OR15-3A immunoglobulin heavy diversity 3/OR15-3A (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD3/OR15-3A|IGHD3OR153A" immunoglobulin heavy diversity 3/OR15-3A Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2015-07-24 28331 ENSG00000282520 OTTHUMG00000184598 uc059gor.1 X55579 2114977 IGHD3/OR15-3a +HGNC:5501 IGHD3OR15-3B immunoglobulin heavy diversity 3/OR15-3B (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD3/OR15-3B|IGHD3OR153B" immunoglobulin heavy diversity 3/OR15-3B Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2015-07-24 28330 ENSG00000282089 OTTHUMG00000184596 uc059gps.1 X55580 2114977 IGHD3/OR15-3b +HGNC:5505 IGHD4-4 immunoglobulin heavy diversity 4-4 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD44|DA4" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28496 ENSG00000233655 OTTHUMG00000152355 uc059gfd.1 X13972 NG_001019 "3243276|3138112" IGHD4-4 +HGNC:5502 IGHD4-11 immunoglobulin heavy diversity 4-11 (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD411|DA1" immunoglobulin heavy diversity 4-11 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-09-12 2014-11-19 28495 ENSG00000232543 OTTHUMG00000152368 uc059gew.1 X13972 NG_001019 3243276 IGHD4-11 +HGNC:5503 IGHD4-17 immunoglobulin heavy diversity 4-17 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD417 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28494 ENSG00000227800 OTTHUMG00000152437 uc059gep.1 X97051 NG_001019 3138112 IGHD4-17 +HGNC:5504 IGHD4-23 immunoglobulin heavy diversity 4-23 (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD423 immunoglobulin heavy diversity 4-23 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-09-12 2014-11-19 28493 ENSG00000227196 OTTHUMG00000152438 uc059gei.1 X97051 NG_001019 3138112 IGHD4-23 +HGNC:5506 IGHD4OR15-4A immunoglobulin heavy diversity 4/OR15-4A (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD4/OR15-4A|IGHD4OR154A" immunoglobulin heavy diversity 4/OR15-4A Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2013-12-06 28329 ENSG00000271317 OTTHUMG00000184621 uc059goq.1 X55581 2114977 IGHD4/OR15-4a +HGNC:5507 IGHD4OR15-4B immunoglobulin heavy diversity 4/OR15-4B (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD4/OR15-4B|IGHD4OR154B" immunoglobulin heavy diversity 4/OR15-4B Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2013-12-06 28328 ENSG00000270451 OTTHUMG00000184611 uc059gpr.1 X55582 2114977 IGHD4/OR15-4b +HGNC:5511 IGHD5-5 immunoglobulin heavy diversity 5-5 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD55|DK4" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-18 28492 ENSG00000211928 OTTHUMG00000152360 uc059gfc.1 X13972 NG_001019 "3138112|3243276" IGHD5-5 +HGNC:5508 IGHD5-12 immunoglobulin heavy diversity 5-12 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD512|DK1" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28491 ENSG00000211921 OTTHUMG00000152367 uc059gev.1 X13972 NG_001019 3243276 IGHD5-12 +HGNC:5509 IGHD5-18 immunoglobulin heavy diversity 5-18 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD518 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28490 ENSG00000211915 OTTHUMG00000152433 uc059geo.1 X97051 NG_001019 3138112 IGHD5-18 +HGNC:5510 IGHD5-24 immunoglobulin heavy diversity 5-24 (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD524 immunoglobulin heavy diversity 5-24 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-09-12 2014-11-19 28489 ENSG00000211909 OTTHUMG00000152427 uc059geh.1 X97051 NG_001019 3138112 IGHD5-24 +HGNC:5512 IGHD5OR15-5A immunoglobulin heavy diversity 5/OR15-5A (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD5/OR15-5A|IGHD5OR155A" immunoglobulin heavy diversity 5/OR15-5A Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2013-12-06 28327 ENSG00000270961 OTTHUMG00000184622 uc059gop.1 X55583 2114977 IGHD5/OR15-5a +HGNC:5513 IGHD5OR15-5B immunoglobulin heavy diversity 5/OR15-5B (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHD5/OR15-5B|IGHD5OR155B" immunoglobulin heavy diversity 5/OR15-5B Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-10 2013-12-06 28326 ENSG00000270824 OTTHUMG00000184624 uc059gpq.1 X55584 2114977 IGHD5/OR15-5b +HGNC:5517 IGHD6-6 immunoglobulin heavy diversity 6-6 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD66|D(N4)" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28488 ENSG00000228131 OTTHUMG00000152353 uc059gfb.1 X13972 NG_001019 "3243276|3138112" IGHD6-6 +HGNC:5514 IGHD6-13 immunoglobulin heavy diversity 6-13 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD613|DN1" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28487 ENSG00000211920 OTTHUMG00000152370 uc059geu.1 X13972 NG_001019 3243276 IGHD6-13 +HGNC:5515 IGHD6-19 immunoglobulin heavy diversity 6-19 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD619 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28486 ENSG00000211914 OTTHUMG00000152431 uc059gen.1 X97051 NG_001019 3138112 IGHD6-19 +HGNC:5516 IGHD6-25 immunoglobulin heavy diversity 6-25 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHD625 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28485 ENSG00000225825 OTTHUMG00000152436 uc059geg.1 X97051 NG_001019 3138112 IGHD6-25 +HGNC:5518 IGHD7-27 immunoglobulin heavy diversity 7-27 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHD727|DHQ52" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28484 ENSG00000236597 OTTHUMG00000152435 uc059gee.1 J00256 NG_001019 "6795593|6101209" IGHD7-27 +HGNC:5481 IGHD@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-05 +HGNC:5519 IGHDOR15@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:5521 IGHDY2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:5522 IGHE immunoglobulin heavy constant epsilon other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2014-11-19 3497 ENSG00000211891 OTTHUMG00000152483 uc059gcp.1 J00222 NG_001019 P01854 147180 IGHE objectId:2741 +HGNC:5523 IGHEP1 immunoglobulin heavy constant epsilon P1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy constant epsilon P1|immunoglobulin heavy constant epsilon P1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2011-04-15 2012-10-02 3498 ENSG00000253692 OTTHUMG00000029957 J00223 NG_001019 6811139 PGOHUM00000247910 IGHEP1 +HGNC:5524 IGHEP2 immunoglobulin heavy constant epsilon P2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 9p24.1 09p24.1 "immunoglobulin heavy constant epsilon P2|immunoglobulin heavy constant epsilon P2 pseudogene" Immunoglobulin heavy (IGH) orphons 350 1986-01-01 2011-04-15 2012-06-06 3499 ENSG00000254017 OTTHUMG00000019482 K01241 NG_003254 6964396 PGOHUM00000236371 IGHEP2 +HGNC:5525 IGHG1 immunoglobulin heavy constant gamma 1 (G1m marker) other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2014-11-19 3500 ENSG00000211896 OTTHUMG00000152495 uc059gda.1 J00228 NG_001019 P01857 RGD:1359539 147100 122589 IGHG1 +HGNC:5526 IGHG2 immunoglobulin heavy constant gamma 2 (G2m marker) other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2015-10-01 3501 ENSG00000211893 OTTHUMG00000152482 uc059gct.1 J00230 NG_001019 P01859 IGHG2base: Mutation registry for IgG2 deficiency|http://structure.bmc.lu.se/idbase/IGHG2base/ 147110 221192 IGHG2 +HGNC:5527 IGHG3 immunoglobulin heavy constant gamma 3 (G3m marker) other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2014-11-19 3502 ENSG00000211897 OTTHUMG00000152539 uc059gdk.1 M12958 NG_001019 P01860 6808505 147120 IGHG3 +HGNC:5528 IGHG4 immunoglobulin heavy constant gamma 4 (G4m marker) other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2014-11-19 3503 ENSG00000211892 OTTHUMG00000152481 uc059gcs.1 K01316 NG_001019 P01861 147130 IGHG4 +HGNC:5529 IGHGP immunoglobulin heavy constant gamma P (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 IGHGP1 immunoglobulin heavy constant gamma P Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2008-09-12 2014-11-19 3505 ENSG00000253755 OTTHUMG00000152493 X06766 NG_001019 IGHGP +HGNC:5532 IGHJ1 immunoglobulin heavy joining 1 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28483 ENSG00000211905 OTTHUMG00000152460 uc059ged.1 J00256 NG_001019 IGHJ1 +HGNC:5533 IGHJ1P immunoglobulin heavy joining 1P (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 Jpsi1 "immunoglobulin heavy joining 1P|immunoglobulin heavy joining 1P pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-10 28482 ENSG00000227335 OTTHUMG00000152458 J00256 NG_001019 6101209 IGHJ1P +HGNC:5534 IGHJ2 immunoglobulin heavy joining 2 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28481 ENSG00000211904 OTTHUMG00000152457 uc059gec.1 J00256 NG_001019 IGHJ2 +HGNC:5535 IGHJ2P immunoglobulin heavy joining 2P (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 Jpsi2 "immunoglobulin heavy joining 2P|immunoglobulin heavy joining 2P pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28480 ENSG00000237547 OTTHUMG00000152456 J00256 NG_001019 6101209 IGHJ2P +HGNC:5536 IGHJ3 immunoglobulin heavy joining 3 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28479 ENSG00000242887 OTTHUMG00000152453 uc059geb.1 J00256 NG_001019 IGHJ3 +HGNC:5537 IGHJ3P immunoglobulin heavy joining 3P (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 Jpsi3 "immunoglobulin heavy joining 3P|immunoglobulin heavy joining 3P pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28478 ENSG00000237111 OTTHUMG00000152459 J00256 NG_001019 6101209 IGHJ3P +HGNC:5538 IGHJ4 immunoglobulin heavy joining 4 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-18 28477 ENSG00000240041 OTTHUMG00000152454 uc059gea.1 J00256 NG_001019 IGHJ4 +HGNC:5539 IGHJ5 immunoglobulin heavy joining 5 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-18 28476 ENSG00000242472 OTTHUMG00000152461 uc059gdz.1 J00256 NG_001019 IGHJ5 +HGNC:5540 IGHJ6 immunoglobulin heavy joining 6 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-11-19 28475 ENSG00000211900 OTTHUMG00000152455 uc059gdy.1 J00256 NG_001019 IGHJ6 +HGNC:5531 IGHJ@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-05 +HGNC:5541 IGHM immunoglobulin heavy constant mu other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2001-06-22 2015-10-01 3507 ENSG00000211899 OTTHUMG00000152452 uc059gdp.1 X14940 NG_001019 P01871 2115996 IGHMbase: Mutation registry for µ heavy-chain deficiency|http://structure.bmc.lu.se/idbase/IGHMbase/ 147020 122591 IGHM +HGNC:5542 IGHMBP2 immunoglobulin mu binding protein 2 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 "ZFAND7|SMUBP2|CATF1|SMARD1|HCSA|HMN6|CMT2S" "cardiac transcription factor 1|zinc finger, AN1-type domain 7" "Zinc fingers AN1-type|UPF1 like RNA helicases" "63|1169" 1994-12-15 2016-10-12 3508 ENSG00000132740 OTTHUMG00000167894 uc001ook.2 L14754 NM_002180 CCDS8187 P38935 8349627 MGI:99954 RGD:68325 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_250|http://www.lrg-sequence.org/LRG/LRG_250" IGHMBP2 600502 122593 +HGNC:5543 IGHR entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-17 +HGNC:5550 IGHV1-2 immunoglobulin heavy variable 1-2 other immunoglobulin gene Approved 14q32.33 14q32.33 V35 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28474 ENSG00000211934 OTTHUMG00000152320 uc059gfn.1 X07448 NG_001019 P23083 IGHV1-2 +HGNC:5552 IGHV1-3 immunoglobulin heavy variable 1-3 other immunoglobulin gene Approved 14q32.33 14q32.33 VI-3B Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28473 ENSG00000211935 OTTHUMG00000152323 uc059gfo.1 X62109 NG_001019 IGHV1-3 +HGNC:5559 IGHV1-8 immunoglobulin heavy variable 1-8 other immunoglobulin gene Approved 14q32.33 not on reference assembly 14q32.33 not on reference assembly Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2015-04-01 28472 M99637 NG_001019 IGHV1-8 +HGNC:5546 IGHV1-12 immunoglobulin heavy variable 1-12 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 1-12|immunoglobulin heavy variable 1-12 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28471 ENSG00000254174 OTTHUMG00000152281 X92210 NG_001019 PGOHUM00000247924 IGHV1-12 +HGNC:5547 IGHV1-14 immunoglobulin heavy variable 1-14 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 1-14|immunoglobulin heavy variable 1-14 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28470 ENSG00000253709 OTTHUMG00000152290 M99639 NG_001019 PGOHUM00000247925 IGHV1-14 +HGNC:5548 IGHV1-17 immunoglobulin heavy variable 1-17 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 1-17|immunoglobulin heavy variable 1-17 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28469 ENSG00000254046 OTTHUMG00000152288 M99640 NG_001019 PGOHUM00000250117 IGHV1-17 +HGNC:5549 IGHV1-18 immunoglobulin heavy variable 1-18 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28468 ENSG00000211945 OTTHUMG00000152276 uc059gfw.1 M99641 NG_001019 IGHV1-18 +HGNC:5551 IGHV1-24 immunoglobulin heavy variable 1-24 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28467 ENSG00000211950 OTTHUMG00000152095 uc059ggb.1 M99642 NG_001019 IGHV1-24 +HGNC:5560 IGHV1-38-4 immunoglobulin heavy variable 1-38-4 (non-functional) other immunoglobulin gene Approved 14q32.33 not on reference assembly 14q32.33 not on reference assembly IGHV1-c IGHV1-C "immunoglobulin heavy variable 1-C (provisional)|immunoglobulin heavy variable 1-C (provisional, non-functional)" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-04-09 2014-04-09 2015-04-01 28460 KF698736 IGHV1-38-4 +HGNC:5553 IGHV1-45 immunoglobulin heavy variable 1-45 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28466 ENSG00000211961 OTTHUMG00000152075 uc059ggp.1 X92209 NG_001019 IGHV1-45 +HGNC:5554 IGHV1-46 immunoglobulin heavy variable 1-46 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28465 ENSG00000211962 OTTHUMG00000151963 uc059ggq.1 X92343 NG_001019 P01743 IGHV1-46 +HGNC:5555 IGHV1-58 immunoglobulin heavy variable 1-58 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28464 ENSG00000211968 OTTHUMG00000151953 uc059ggw.1 M29809 NG_001019 IGHV1-58 +HGNC:5556 IGHV1-67 immunoglobulin heavy variable 1-67 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 1-67|immunoglobulin heavy variable 1-67 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-10-16 28463 ENSG00000253274 OTTHUMG00000151868 X92212 NG_001019 PGOHUM00000247979 IGHV1-67 +HGNC:5557 IGHV1-68 immunoglobulin heavy variable 1-68 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 1-68|immunoglobulin heavy variable 1-68 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28462 ENSG00000253703 OTTHUMG00000151876 AB019437 NG_001019 PGOHUM00000247983 IGHV1-68 +HGNC:5558 IGHV1-69 immunoglobulin heavy variable 1-69 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHV1-E Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-10 28461 ENSG00000211973 OTTHUMG00000151862 uc059ghd.1 L22582 NG_001019 P01742 8469934 IGHV1-69 +HGNC:5562 IGHV1-69-2 immunoglobulin heavy variable 1-69-2 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHV1-f IGHV1-F immunoglobulin heavy variable 1-F (provisional) Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-04-09 2014-04-09 2015-04-01 28458 ENSG00000280411 OTTHUMG00000189341 KF698734 NG_001019 23541343 IGHV1-69-2 +HGNC:49601 IGHV1-69D immunoglobulin heavy variable 1-69D other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2014-01-22 2015-04-01 102723169 KC713934 NG_001019 23541343 IGHV1-69D +HGNC:5563 IGHV1OR15-1 immunoglobulin heavy variable 1/OR15-1 (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 IGHV1/OR15-1 "immunoglobulin heavy variable 1/OR15-1|immunoglobulin heavy variable 1/OR15-1 pseudogene|immunoglobulin heavy variable 1/OR15-1 (pseudogene)" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2012-06-12 2013-10-18 388077 ENSG00000270505 OTTHUMG00000184670 uc059grb.1 Z29631 NR_135694 IGHV1OR15-1 IGHV1/OR15-1 +HGNC:5564 IGHV1OR15-2 immunoglobulin heavy variable 1/OR15-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 15q11.1 15q11.1 IGHV1/OR15-2 "immunoglobulin heavy variable 1/OR15-2|immunoglobulin heavy variable 1/OR15-2 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2012-11-19 100287128 ENSG00000259337 OTTHUMG00000176334 L25543 PGOHUM00000246613 IGHV1/OR15-2 +HGNC:5565 IGHV1OR15-3 immunoglobulin heavy variable 1/OR15-3 (pseudogene) pseudogene immunoglobulin pseudogene Approved 15q11.2 15q11.2 IGHV1/OR15-3 "immunoglobulin heavy variable 1/OR15-3|immunoglobulin heavy variable 1/OR15-3 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-10-18 646370 ENSG00000271288 OTTHUMG00000184673 Z29595 NR_135666 8801417 PGOHUM00000251161 IGHV1/OR15-3 +HGNC:5566 IGHV1OR15-4 immunoglobulin heavy variable 1/OR15-4 (pseudogene) pseudogene immunoglobulin pseudogene Approved 15q11.2 15q11.2 IGHV1/OR15-4 "immunoglobulin heavy variable 1/OR15-4|immunoglobulin heavy variable 1/OR15-4 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-05-22 646379 ENSG00000270356 OTTHUMG00000176336 Z29596 PGOHUM00000251163 IGHV1/OR15-4 +HGNC:5567 IGHV1OR15-5 immunoglobulin heavy variable 1/OR15-5 (non-functional) other immunoglobulin gene Approved 15q11.2 not on reference assembly 15q11.2 not on reference assembly IGHV1/OR15-5 "immunoglobulin heavy variable 1/OR15-5|immunoglobulin heavy variable 1/OR15-5 pseudogene|immunoglobulin heavy variable 1/OR15-5 (pseudogene)" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2012-06-12 2015-04-01 100384884 Z29633 NG_016978 IGHV1/OR15-5 +HGNC:5568 IGHV1OR15-6 immunoglobulin heavy variable 1/OR15-6 (pseudogene) pseudogene immunoglobulin pseudogene Approved 15q11.2 15q11.2 IGHV1/OR15-6 "immunoglobulin heavy variable 1/OR15-6|immunoglobulin heavy variable 1/OR15-6 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28320 ENSG00000270685 OTTHUMG00000184707 Z29634 IGHV1/OR15-6 +HGNC:5569 IGHV1OR15-9 immunoglobulin heavy variable 1/OR15-9 (non-functional) other immunoglobulin gene Approved 15q11.1 15q11.1 "IGHV1/OR15-9|IGHV1OR159" VSIG7 "immunoglobulin heavy variable 1/OR15-9|V-set and immunoglobulin domain containing 7" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-08-22 2014-11-19 390531 ENSG00000188403 OTTHUMG00000171652 uc059gon.1 L25542 NG_032069 7959766 IGHV1/OR15-9 +HGNC:5570 IGHV1OR16-1 immunoglobulin heavy variable 1/OR16-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV1/OR16-1 "immunoglobulin heavy variable 1/OR16-1|immunoglobulin heavy variable 1/OR16-1 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28315 ENSG00000261704 OTTHUMG00000176645 Z29599 NG_027716 PGOHUM00000249069 IGHV1/OR16-1 +HGNC:5571 IGHV1OR16-2 immunoglobulin heavy variable 1/OR16-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV1/OR16-2 "immunoglobulin heavy variable 1/OR16-2|immunoglobulin heavy variable 1/OR16-2 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28314 ENSG00000259852 OTTHUMG00000176445 Z29600 IGHV1/OR16-2 +HGNC:5572 IGHV1OR16-3 immunoglobulin heavy variable 1/OR16-3 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV1/OR16-3 "immunoglobulin heavy variable 1/OR16-3|immunoglobulin heavy variable 1/OR16-3 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28313 ENSG00000260048 OTTHUMG00000176557 Z29639 IGHV1/OR16-3 +HGNC:5573 IGHV1OR16-4 immunoglobulin heavy variable 1/OR16-4 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV1/OR16-4 "immunoglobulin heavy variable 1/OR16-4|immunoglobulin heavy variable 1/OR16-4 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28312 ENSG00000259997 OTTHUMG00000176448 Z17397 PGOHUM00000259125 IGHV1/OR16-4 +HGNC:38040 IGHV1OR21-1 immunoglobulin heavy variable 1/OR21-1 (non-functional) other immunoglobulin gene Approved 21p11.2 21p11.2 IGHV1/OR21-1 immunoglobulin heavy variable 1/OR21-1 pseudogene Immunoglobulin heavy (IGH) orphons 350 2010-03-25 2010-11-09 2015-02-02 390530 ENSG00000277282 OTTHUMG00000188295 uc061zaq.1 NG_011680 A6NJS3 RGD:2321747 IGHV1OR21-1 IGHV1/OR21-1 +HGNC:5576 IGHV2-5 immunoglobulin heavy variable 2-5 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28457 ENSG00000211937 OTTHUMG00000152287 uc059gfq.1 X62111 NG_001019 P01817 IGHV2-5 +HGNC:5574 IGHV2-10 immunoglobulin heavy variable 2-10 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 not on reference assembly 14q32.33 not on reference assembly "immunoglobulin heavy variable 2-10|immunoglobulin heavy variable 2-10 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2015-04-01 28456 M99647 NG_001019 PGOHUM00000250116 IGHV2-10 +HGNC:5575 IGHV2-26 immunoglobulin heavy variable 2-26 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28455 ENSG00000211951 OTTHUMG00000152100 uc059ggd.1 M99648 NG_001019 IGHV2-26 +HGNC:5577 IGHV2-70 immunoglobulin heavy variable 2-70 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2015-01-20 28454 ENSG00000274576 OTTHUMG00000189342 uc059ghe.1 L21969 NG_001019 P01814 IGHV2-70 +HGNC:49602 IGHV2-70D immunoglobulin heavy variable 2-70D other immunoglobulin gene Approved 14q32.33 14q32.33 2014-01-22 2015-04-01 102723168 OTTHUMG00000189342 KC713935 NG_001019 23541343 IGHV2-70D +HGNC:5578 IGHV2@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:5579 IGHV2OR16-5 immunoglobulin heavy variable 2/OR16-5 (non-functional) other immunoglobulin gene Approved 16p11.2 16p11.2 IGHV2/OR16-5 immunoglobulin heavy variable 2/OR16-5 Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-08-22 2014-11-19 100129631 ENSG00000259303 OTTHUMG00000152881 uc059tqt.1 L25544 RGD:2323067 IGHV2/OR16-5 +HGNC:5613 IGHV3-6 immunoglobulin heavy variable 3-6 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-6|immunoglobulin heavy variable 3-6 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28453 ENSG00000253763 OTTHUMG00000152283 M99650 NG_001019 PGOHUM00000258749 IGHV3-6 +HGNC:5620 IGHV3-7 immunoglobulin heavy variable 3-7 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28452 ENSG00000211938 OTTHUMG00000152271 uc059gfr.1 M99649 NG_001019 P01780 IGHV3-7 +HGNC:5628 IGHV3-9 immunoglobulin heavy variable 3-9 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2015-02-02 28451 M99651 NG_001019 IGHV3-9 +HGNC:5580 IGHV3-11 immunoglobulin heavy variable 3-11 (gene/pseudogene) other immunoglobulin gene Approved 14q32.33 14q32.33 immunoglobulin heavy variable 3-11 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-09-12 2012-02-08 28450 ENSG00000211941 OTTHUMG00000152277 uc059gfs.1 M99652 NG_001019 P01762 IGHV3-11 +HGNC:5581 IGHV3-13 immunoglobulin heavy variable 3-13 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28449 ENSG00000211942 OTTHUMG00000152295 uc059gft.1 X92217 NG_001019 P01766 IGHV3-13 +HGNC:5582 IGHV3-15 immunoglobulin heavy variable 3-15 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-10 28448 ENSG00000211943 OTTHUMG00000152282 uc059gfu.1 X92216 NG_001019 IGHV3-15 +HGNC:5583 IGHV3-16 immunoglobulin heavy variable 3-16 (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 immunoglobulin heavy variable 3-16 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-08-22 2012-02-08 28447 ENSG00000211944 OTTHUMG00000152273 uc059gfv.1 M99655 NG_001019 IGHV3-16 +HGNC:5584 IGHV3-19 immunoglobulin heavy variable 3-19 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-19|immunoglobulin heavy variable 3-19 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28446 ENSG00000253883 OTTHUMG00000152280 M99656 NG_001019 PGOHUM00000247930 IGHV3-19 +HGNC:5585 IGHV3-20 immunoglobulin heavy variable 3-20 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28445 ENSG00000211946 OTTHUMG00000152285 uc059gfy.1 M99657 NG_001019 IGHV3-20 +HGNC:5586 IGHV3-21 immunoglobulin heavy variable 3-21 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28444 ENSG00000211947 OTTHUMG00000152279 uc059gfz.1 Z14073 NG_001019 269544 IGHV3-21 +HGNC:5587 IGHV3-22 immunoglobulin heavy variable 3-22 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-22|immunoglobulin heavy variable 3-22 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28443 ENSG00000253957 OTTHUMG00000152293 M99659 NG_001019 PGOHUM00000247931 IGHV3-22 +HGNC:5588 IGHV3-23 immunoglobulin heavy variable 3-23 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28442 ENSG00000211949 OTTHUMG00000152091 uc059gga.1 M99660 NG_001019 P01764 611939 IGHV3-23 +HGNC:5589 IGHV3-25 immunoglobulin heavy variable 3-25 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-25|immunoglobulin heavy variable 3-25 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-10-16 28441 ENSG00000253441 OTTHUMG00000152073 M99661 NG_001019 PGOHUM00000262209 IGHV3-25 +HGNC:5590 IGHV3-29 immunoglobulin heavy variable 3-29 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-29|immunoglobulin heavy variable 3-29 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2015-02-02 28440 ENSG00000270474 OTTHUMG00000188328 M99662 NG_001019 PGOHUM00000292489 IGHV3-29 +HGNC:5591 IGHV3-30 immunoglobulin heavy variable 3-30 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2015-01-20 28439 ENSG00000270550 OTTHUMG00000188332 uc059ggf.1 M83134 NG_001019 P01768 IGHV3-30 +HGNC:5592 IGHV3-30-2 immunoglobulin heavy variable 3-30-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-30-2|immunoglobulin heavy variable 3-30-2 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28438 ENSG00000253587 OTTHUMG00000152082 AB019439 NG_001019 PGOHUM00000247941 IGHV3-30-2 +HGNC:5593 IGHV3-30-3 immunoglobulin heavy variable 3-30-3 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2015-04-01 57290 X92283 IGHV3-30-3 +HGNC:5594 IGHV3-30-5 immunoglobulin heavy variable 3-30-5 other immunoglobulin gene Approved 14q32.33 not on reference assembly 14q32.33 not on reference assembly Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2015-04-01 89770 M83134 IGHV3-30-5 +HGNC:5595 IGHV3-32 immunoglobulin heavy variable 3-32 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-32|immunoglobulin heavy variable 3-32 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28435 ENSG00000254289 OTTHUMG00000152063 M99664 NG_001019 PGOHUM00000247943 IGHV3-32 +HGNC:5596 IGHV3-33 immunoglobulin heavy variable 3-33 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-10 28434 ENSG00000211955 OTTHUMG00000152077 uc059ggh.1 L06618 NG_001019 P01772 IGHV3-33 +HGNC:5597 IGHV3-33-2 immunoglobulin heavy variable 3-33-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-33-2|immunoglobulin heavy variable 3-33-2 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28433 ENSG00000253440 OTTHUMG00000152096 AB019439 NG_001019 PGOHUM00000247946 IGHV3-33-2 +HGNC:5598 IGHV3-35 immunoglobulin heavy variable 3-35 (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 immunoglobulin heavy variable 3-35 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-08-22 2012-02-08 28432 ENSG00000211957 OTTHUMG00000152079 uc059ggj.1 M99666 NG_001019 IGHV3-35 +HGNC:5599 IGHV3-36 immunoglobulin heavy variable 3-36 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-36|immunoglobulin heavy variable 3-36 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28431 ENSG00000253240 OTTHUMG00000152068 M99667 NG_001019 PGOHUM00000247949 IGHV3-36 +HGNC:5600 IGHV3-37 immunoglobulin heavy variable 3-37 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-37|immunoglobulin heavy variable 3-37 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28430 ENSG00000253359 OTTHUMG00000152083 M99668 NG_001019 PGOHUM00000247950 IGHV3-37 +HGNC:5601 IGHV3-38 immunoglobulin heavy variable 3-38 (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 immunoglobulin heavy variable 3-38 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-08-22 2012-02-08 28429 ENSG00000211958 OTTHUMG00000152093 uc059ggk.1 M99669 NG_001019 RGD:7592549 IGHV3-38 +HGNC:5629 IGHV3-38-3 immunoglobulin heavy variable 3-38-3 (non-functional) other immunoglobulin gene Approved 14q32.33 not on reference assembly 14q32.33 not on reference assembly IGHV3-d IGHV3-D immunoglobulin heavy variable 3-D (provisional) Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-04-09 2014-04-09 2015-04-01 28404 KF698732 23541343 IGHV3-38-3 +HGNC:5602 IGHV3-41 immunoglobulin heavy variable 3-41 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-41|immunoglobulin heavy variable 3-41 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2015-02-02 28428 ENSG00000278473 OTTHUMG00000152089 M99670 NG_001019 PGOHUM00000292499 IGHV3-41 +HGNC:5603 IGHV3-42 immunoglobulin heavy variable 3-42 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-42|immunoglobulin heavy variable 3-42 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28427 ENSG00000254228 OTTHUMG00000152081 M99671 NG_001019 PGOHUM00000247956 IGHV3-42 +HGNC:5604 IGHV3-43 immunoglobulin heavy variable 3-43 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28426 ENSG00000232216 OTTHUMG00000152094 uc059ggm.1 M99672 NG_001019 IGHV3-43 +HGNC:50322 IGHV3-43D immunoglobulin heavy variable 3-43D other immunoglobulin gene Approved 14q32.33 not on reference assembly 14q32.33 not on reference assembly Immunoglobulin heavy locus at 14q32.33 349 2014-04-09 2015-04-01 103106901 KC713950 23541343 IGHV3-43D +HGNC:5605 IGHV3-47 immunoglobulin heavy variable 3-47 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-47|immunoglobulin heavy variable 3-47 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2016-10-05 28425 ENSG00000229092 OTTHUMG00000151968 Z18900 NG_001019 PGOHUM00000262210 IGHV3-47 +HGNC:5606 IGHV3-48 immunoglobulin heavy variable 3-48 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28424 ENSG00000211964 OTTHUMG00000151959 uc059ggr.1 M99675 NG_001019 P01763 IGHV3-48 +HGNC:5607 IGHV3-49 immunoglobulin heavy variable 3-49 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28423 ENSG00000211965 OTTHUMG00000151967 uc059ggt.1 M99676 NG_001019 IGHV3-49 +HGNC:5608 IGHV3-50 immunoglobulin heavy variable 3-50 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-50|immunoglobulin heavy variable 3-50 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28422 ENSG00000253241 OTTHUMG00000151964 M99677 NG_001019 PGOHUM00000247959 IGHV3-50 +HGNC:5609 IGHV3-52 immunoglobulin heavy variable 3-52 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-52|immunoglobulin heavy variable 3-52 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28421 ENSG00000253545 OTTHUMG00000151958 M99678 NG_001019 PGOHUM00000247963 IGHV3-52 +HGNC:5610 IGHV3-53 immunoglobulin heavy variable 3-53 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28420 ENSG00000211967 OTTHUMG00000151966 uc059ggv.1 M99679 NG_001019 P01767 IGHV3-53 +HGNC:5611 IGHV3-54 immunoglobulin heavy variable 3-54 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-54|immunoglobulin heavy variable 3-54 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2015-02-02 28419 ENSG00000275475 OTTHUMG00000151962 M99680 NG_001019 PGOHUM00000292508 IGHV3-54 +HGNC:5612 IGHV3-57 immunoglobulin heavy variable 3-57 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-57|immunoglobulin heavy variable 3-57 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28418 ENSG00000253759 OTTHUMG00000151961 M29815 NG_001019 IGHV3-57 +HGNC:5614 IGHV3-60 immunoglobulin heavy variable 3-60 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-60|immunoglobulin heavy variable 3-60 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28417 ENSG00000253742 OTTHUMG00000151956 M29813 NG_001019 IGHV3-60 +HGNC:5615 IGHV3-62 immunoglobulin heavy variable 3-62 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-62|immunoglobulin heavy variable 3-62 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28416 ENSG00000253132 OTTHUMG00000151950 M29814 NG_001019 IGHV3-62 +HGNC:5616 IGHV3-63 immunoglobulin heavy variable 3-63 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-63|immunoglobulin heavy variable 3-63 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28415 ENSG00000253936 OTTHUMG00000151977 M99681 NG_001019 PGOHUM00000247975 IGHV3-63 +HGNC:5617 IGHV3-64 immunoglobulin heavy variable 3-64 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28414 ENSG00000223648 OTTHUMG00000151971 uc059ghb.1 M99682 NG_001019 IGHV3-64 +HGNC:49603 IGHV3-64D immunoglobulin heavy variable 3-64D other immunoglobulin gene Approved 14q32.33 14q32.33 2014-01-22 2015-04-01 102723170 KC713941 NG_001019 23541343 IGHV3-64D +HGNC:5618 IGHV3-65 immunoglobulin heavy variable 3-65 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-65|immunoglobulin heavy variable 3-65 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28413 ENSG00000253209 OTTHUMG00000151972 Z27503 NG_001019 PGOHUM00000247977 IGHV3-65 +HGNC:5619 IGHV3-66 immunoglobulin heavy variable 3-66 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28412 ENSG00000211972 OTTHUMG00000151880 uc059ghc.1 X92218 NG_001019 IGHV3-66 +HGNC:5631 IGHV3-69-1 immunoglobulin heavy variable 3-69-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV3-h IGHV3-H "immunoglobulin heavy variable 3-H (provisional)|immunoglobulin heavy variable 3-H pseudogene (provisional)|immunoglobulin heavy variable 3-H (pseudogene)" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-04-09 2014-04-09 2014-04-09 28402 AJ879484 NG_001019 16133446 IGHV3-69-1 +HGNC:5621 IGHV3-71 immunoglobulin heavy variable 3-71 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV3-g IGHV3-G "immunoglobulin heavy variable 3-71|immunoglobulin heavy variable 3-G pseudogene (provisional)|immunoglobulin heavy variable 3-G (provisional)|immunoglobulin heavy variable 3-71 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2014-11-19 28411 ENSG00000254056 OTTHUMG00000151881 AB019437 NG_001019 PGOHUM00000247986 IGHV3-71 +HGNC:5622 IGHV3-72 immunoglobulin heavy variable 3-72 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28410 ENSG00000225698 OTTHUMG00000151865 uc059ghi.1 X92206 NG_001019 IGHV3-72 +HGNC:5623 IGHV3-73 immunoglobulin heavy variable 3-73 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28409 ENSG00000211976 OTTHUMG00000151867 uc059ghj.1 Z27508 NG_001019 IGHV3-73 +HGNC:5624 IGHV3-74 immunoglobulin heavy variable 3-74 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28408 ENSG00000224650 OTTHUMG00000151860 uc059ghk.1 Z12353 NG_001019 IGHV3-74 +HGNC:5625 IGHV3-75 immunoglobulin heavy variable 3-75 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-75|immunoglobulin heavy variable 3-75 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-10 28407 ENSG00000254176 OTTHUMG00000151866 Z27510 NG_001019 IGHV3-75 +HGNC:5626 IGHV3-76 immunoglobulin heavy variable 3-76 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-76|immunoglobulin heavy variable 3-76 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28406 ENSG00000253247 OTTHUMG00000151878 Z12341 NG_001019 IGHV3-76 +HGNC:5627 IGHV3-79 immunoglobulin heavy variable 3-79 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 3-79|immunoglobulin heavy variable 3-79 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2015-02-02 28405 ENSG00000275747 OTTHUMG00000151871 AB019437 NG_001019 PGOHUM00000292531 IGHV3-79 +HGNC:5632 IGHV3@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:5633 IGHV3OR15-7 immunoglobulin heavy variable 3/OR15-7 (pseudogene) pseudogene immunoglobulin pseudogene Approved 15q11.2 15q11.2 IGHV3/OR15-7 "immunoglobulin heavy variable 3/OR15-7|immunoglobulin heavy variable 3/OR15-7 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2012-06-12 28318 ENSG00000259490 OTTHUMG00000171835 uc059goo.1 Z29597 IGHV3/OR15-7 +HGNC:5641 IGHV3OR16-6 immunoglobulin heavy variable 3/OR16-6 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV3/OR16-6 "immunoglobulin heavy variable 3/OR16-6|immunoglobulin heavy variable 3/OR16-6 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 647187 ENSG00000270864 OTTHUMG00000176443 L25545 PGOHUM00000249080 IGHV3/OR16-6 +HGNC:5642 IGHV3OR16-7 immunoglobulin heavy variable 3/OR16-7 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV3/OR16-7 "immunoglobulin heavy variable 3/OR16-7|immunoglobulin heavy variable 3/OR16-7 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28309 ENSG00000271620 OTTHUMG00000184739 Z29604 NG_033846 PGOHUM00000262294 IGHV3/OR16-7 +HGNC:5643 IGHV3OR16-8 immunoglobulin heavy variable 3/OR16-8 (non-functional) other immunoglobulin gene Approved 16p11.2 16p11.2 IGHV3/OR16-8 immunoglobulin heavy variable 3/OR16-8 Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-11 2013-05-22 388255 ENSG00000271130 OTTHUMG00000176449 uc021thd.3 Z29605 PGOHUM00000262331 IGHV3/OR16-8 +HGNC:5644 IGHV3OR16-9 immunoglobulin heavy variable 3/OR16-9 (non-functional) other immunoglobulin gene Approved 16p11.2 16p11.2 IGHV3/OR16-9 immunoglobulin heavy variable 3/OR16-9 Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-11 2013-12-06 28307 ENSG00000270472 OTTHUMG00000184753 uc031qvz.3 Z29606 IGHV3/OR16-9 +HGNC:5634 IGHV3OR16-10 immunoglobulin heavy variable 3/OR16-10 (non-functional) other immunoglobulin gene Approved 16p11.2 16p11.2 IGHV3/OR16-10 immunoglobulin heavy variable 3/OR16-10 Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-11 2013-10-18 28306 ENSG00000233732 OTTHUMG00000176446 uc059tqx.1 Z29607 IGHV3/OR16-10 +HGNC:5635 IGHV3OR16-11 immunoglobulin heavy variable 3/OR16-11 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV3/OR16-11 "immunoglobulin heavy variable 3/OR16-11|immunoglobulin heavy variable 3/OR16-11 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28305 ENSG00000270318 OTTHUMG00000184731 Z29608 PGOHUM00000264439 IGHV3/OR16-11 +HGNC:5636 IGHV3OR16-12 immunoglobulin heavy variable 3/OR16-12 (non-functional) other immunoglobulin gene Approved 16p11.2 16p11.2 IGHV3/OR16-12 immunoglobulin heavy variable 3/OR16-12 Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-11 2013-10-18 28304 ENSG00000270467 OTTHUMG00000176355 uc059tru.1 Z29609 IGHV3/OR16-12 +HGNC:5637 IGHV3OR16-13 immunoglobulin heavy variable 3/OR16-13 (non-functional) other immunoglobulin gene Approved 16p11.2 16p11.2 IGHV3/OR16-13 immunoglobulin heavy variable 3/OR16-13 Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-11 2013-12-06 100287372 ENSG00000271178 OTTHUMG00000176357 uc059trv.1 Z29610 NG_011771 IGHV3/OR16-13 +HGNC:5638 IGHV3OR16-14 immunoglobulin heavy variable 3/OR16-14 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV3/OR16-14 "immunoglobulin heavy variable 3/OR16-14|immunoglobulin heavy variable 3/OR16-14 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2012-01-20 100568447 Z29611 IGHV3/OR16-14 +HGNC:5639 IGHV3OR16-15 immunoglobulin heavy variable 3/OR16-15 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV3/OR16-15 "immunoglobulin heavy variable 3/OR16-15|immunoglobulin heavy variable 3/OR16-15 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28301 ENSG00000261834 OTTHUMG00000176442 L25546 PGOHUM00000249079 IGHV3/OR16-15 +HGNC:5640 IGHV3OR16-16 immunoglobulin heavy variable 3/OR16-16 (pseudogene) pseudogene immunoglobulin pseudogene Approved 16p11.2 16p11.2 IGHV3/OR16-16 "immunoglobulin heavy variable 3/OR16-16|immunoglobulin heavy variable 3/OR16-16 pseudogene" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2011-04-15 2013-12-06 28300 ENSG00000259842 OTTHUMG00000176367 Z29613 PGOHUM00000259061 IGHV3/OR16-16 +HGNC:5652 IGHV4-4 immunoglobulin heavy variable 4-4 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2015-02-02 28401 ENSG00000276775 OTTHUMG00000152322 uc059gfp.1 X62112 NG_001019 IGHV4-4 +HGNC:5645 IGHV4-28 immunoglobulin heavy variable 4-28 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28400 ENSG00000211952 OTTHUMG00000152062 uc059gge.1 X05714 NG_001019 IGHV4-28 +HGNC:5646 IGHV4-30-1 immunoglobulin heavy variable 4-30-1 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28399 L10098 IGHV4-30-1 +HGNC:5647 IGHV4-30-2 immunoglobulin heavy variable 4-30-2 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHV4-3|IGHV4302" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28398 L10089 NG_001019 8454861 IGHV4-30-2 +HGNC:5648 IGHV4-30-4 immunoglobulin heavy variable 4-30-4 other immunoglobulin gene Approved 14q32.33 14q32.33 "IGHV4-3|IGHV4304" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28397 Z14238 IGHV4-30-4 +HGNC:5649 IGHV4-31 immunoglobulin heavy variable 4-31 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28396 ENSG00000231475 OTTHUMG00000152097 uc059ggg.1 L10098 NG_001019 IGHV4-31 +HGNC:5650 IGHV4-34 immunoglobulin heavy variable 4-34 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28395 ENSG00000211956 OTTHUMG00000152074 uc059ggi.1 X92278 NG_001019 P06331 356638 IGHV4-34 +HGNC:5657 IGHV4-38-2 immunoglobulin heavy variable 4-38-2 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHV4-B immunoglobulin heavy variable 4-B (provisional) Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-04-09 2014-04-09 2014-04-09 28389 Z12367 IGHV4-38-2 +HGNC:5651 IGHV4-39 immunoglobulin heavy variable 4-39 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28394 ENSG00000211959 OTTHUMG00000152067 uc059ggl.1 L10094 NG_001019 P01824 IGHV4-39 +HGNC:5653 IGHV4-55 immunoglobulin heavy variable 4-55 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 4-55|immunoglobulin heavy variable 4-55 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28393 ENSG00000254395 OTTHUMG00000151955 M99685 NG_001019 PGOHUM00000247966 IGHV4-55 +HGNC:5654 IGHV4-59 immunoglobulin heavy variable 4-59 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28392 ENSG00000224373 OTTHUMG00000151973 uc059ggx.1 L10088 NG_001019 P01825 IGHV4-59 +HGNC:5655 IGHV4-61 immunoglobulin heavy variable 4-61 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28391 ENSG00000211970 OTTHUMG00000151976 uc059ggz.1 M29811 NG_001019 IGHV4-61 +HGNC:5656 IGHV4-80 immunoglobulin heavy variable 4-80 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 4-80|immunoglobulin heavy variable 4-80 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2015-02-02 28390 AB019437 NG_001019 PGOHUM00000247993 IGHV4-80 +HGNC:5658 IGHV4OR15-8 immunoglobulin heavy variable 4/OR15-8 (non-functional) other immunoglobulin gene Approved 15q11.2 15q11.2 "IGHV4/OR15-8|IGHV4OR158" VSIG6 "immunoglobulin heavy variable 4/OR15-8|V-set and immunoglobulin domain containing 6" Immunoglobulin heavy (IGH) orphons 350 2000-04-17 2008-09-15 2014-11-19 28317 ENSG00000259261 OTTHUMG00000171934 uc059grc.1 Z29598 A6NJ16 7951227 RGD:2320755 IGHV4/OR15-8 +HGNC:5661 IGHV5-10-1 immunoglobulin heavy variable 5-10-1 other immunoglobulin gene Approved 14q32.33 14q32.33 IGHV5-a IGHV5-A "immunoglobulin heavy variable 5-A (provisional, gene/pseudogene)|immunoglobulin heavy variable 5-A (provisional)" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2014-06-11 2014-06-11 2014-06-11 28386 X92227 NG_001019 IGHV5-10-1 +HGNC:5659 IGHV5-51 immunoglobulin heavy variable 5-51 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28388 ENSG00000211966 OTTHUMG00000151960 uc059ggu.1 M99686 NG_001019 IGHV5-51 +HGNC:5660 IGHV5-78 immunoglobulin heavy variable 5-78 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 5-78|immunoglobulin heavy variable 5-78 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28387 ENSG00000211978 OTTHUMG00000151873 X92213 NG_001019 PGOHUM00000250119 IGHV5-78 +HGNC:5662 IGHV6-1 immunoglobulin heavy variable 6-1 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 28385 ENSG00000211933 OTTHUMG00000152324 uc059gfm.1 X92224 NG_001019 IGHV6-1 +HGNC:5665 IGHV7-4-1 immunoglobulin heavy variable 7-4-1 other immunoglobulin gene Approved 14q32.33 14q32.33 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2012-02-08 57289 L10057 NG_001019 IGHV7-4-1 +HGNC:5663 IGHV7-27 immunoglobulin heavy variable 7-27 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 7-27|immunoglobulin heavy variable 7-27 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28383 ENSG00000254326 OTTHUMG00000152070 M99643 NG_001019 PGOHUM00000247936 IGHV7-27 +HGNC:5664 IGHV7-34-1 immunoglobulin heavy variable 7-34-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 7-34-1|immunoglobulin heavy variable 7-34-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28382 ENSG00000253325 OTTHUMG00000152085 AB019439 NG_001019 PGOHUM00000247947 IGHV7-34-1 +HGNC:5666 IGHV7-40 immunoglobulin heavy variable 7-40 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 7-40|immunoglobulin heavy variable 7-40 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28381 ENSG00000253467 OTTHUMG00000152088 M99644 NG_001019 PGOHUM00000247953 IGHV7-40 +HGNC:5667 IGHV7-56 immunoglobulin heavy variable 7-56 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 "immunoglobulin heavy variable 7-56|immunoglobulin heavy variable 7-56 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2011-04-15 2012-02-08 28380 ENSG00000253131 OTTHUMG00000151975 M29810 NG_001019 PGOHUM00000247967 IGHV7-56 +HGNC:5668 IGHV7-77 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 IGHV7-77 +HGNC:5669 IGHV7-81 immunoglobulin heavy variable 7-81 (non-functional) other immunoglobulin gene Approved 14q32.33 14q32.33 immunoglobulin heavy variable 7-81 Immunoglobulin heavy locus at 14q32.33 349 2000-04-04 2008-09-09 2012-02-08 28378 ENSG00000211979 OTTHUMG00000151731 uc059ghm.1 Z27509 NG_001019 IGHV7-81 +HGNC:5545 IGHV@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-05 +HGNC:5670 IGHVII-1-1 immunoglobulin heavy variable (II)-1-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-1-1 "immunoglobulin heavy variable (II)-1-1|immunoglobulin heavy variable (II)-1-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28377 ENSG00000254279 OTTHUMG00000152325 AB019441 NG_001019 IGHV(II)-1-1 +HGNC:5671 IGHVII-15-1 immunoglobulin heavy variable (II)-15-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-15-1 "immunoglobulin heavy variable (II)-15-1|immunoglobulin heavy variable (II)-15-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28376 ENSG00000253458 OTTHUMG00000152275 AB019440 NG_001019 IGHV(II)-15-1 +HGNC:5672 IGHVII-20-1 immunoglobulin heavy variable (II)-20-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-20-1 "immunoglobulin heavy variable (II)-20-1|immunoglobulin heavy variable (II)-20-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2015-02-02 28375 AB019440 NG_001019 IGHV(II)-20-1 +HGNC:5673 IGHVII-22-1 immunoglobulin heavy variable (II)-22-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-22-1 "immunoglobulin heavy variable (II)-22-1|immunoglobulin heavy variable (II)-22-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28374 ENSG00000253345 OTTHUMG00000152102 AB019439 NG_001019 IGHV(II)-22-1 +HGNC:5674 IGHVII-26-2 immunoglobulin heavy variable (II)-26-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-26-2 "immunoglobulin heavy variable (II)-26-2|immunoglobulin heavy variable (II)-26-2 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28373 ENSG00000253482 OTTHUMG00000152066 AB019439 NG_001019 PGOHUM00000247935 IGHV(II)-26-2 +HGNC:5675 IGHVII-28-1 immunoglobulin heavy variable (II)-28-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-28-1 "immunoglobulin heavy variable (II)-28-1|immunoglobulin heavy variable (II)-28-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2015-02-02 28372 AB019439 NG_001019 IGHV(II)-28-1 +HGNC:5676 IGHVII-30-1 immunoglobulin heavy variable (II)-30-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-30-1 "immunoglobulin heavy variable (II)-30-1|immunoglobulin heavy variable (II)-30-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28371 ENSG00000253491 OTTHUMG00000152099 AB019439 NG_001019 PGOHUM00000247940 IGHV(II)-30-1 +HGNC:5677 IGHVII-31-1 immunoglobulin heavy variable (II)-31-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-31-1 "immunoglobulin heavy variable (II)-31-1|immunoglobulin heavy variable (II)-31-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28370 ENSG00000253149 OTTHUMG00000152101 AB019439 NG_001019 IGHV(II)-31-1 +HGNC:5678 IGHVII-33-1 immunoglobulin heavy variable (II)-33-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-33-1 "immunoglobulin heavy variable (II)-33-1|immunoglobulin heavy variable (II)-33-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28369 ENSG00000254203 OTTHUMG00000152086 AB019439 NG_001019 PGOHUM00000247945 IGHV(II)-33-1 +HGNC:5679 IGHVII-40-1 immunoglobulin heavy variable (II)-40-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-40-1 "immunoglobulin heavy variable (II)-40-1|immunoglobulin heavy variable (II)-40-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28368 ENSG00000253294 OTTHUMG00000152098 AB019438 NG_001019 IGHV(II)-40-1 +HGNC:5680 IGHVII-43-1 immunoglobulin heavy variable (II)-43-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-43-1 "immunoglobulin heavy variable (II)-43-1|immunoglobulin heavy variable (II)-43-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2015-02-02 28367 AB019438 NG_001019 IGHV(II)-43-1 +HGNC:5681 IGHVII-44-2 immunoglobulin heavy variable (II)-44-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-44-2 "immunoglobulin heavy variable (II)-44-2|immunoglobulin heavy variable (II)-44-2 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28366 ENSG00000253895 OTTHUMG00000152080 AB019438 NG_001019 IGHV(II)-44-2 +HGNC:5682 IGHVII-46-1 immunoglobulin heavy variable (II)-46-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-46-1 "immunoglobulin heavy variable (II)-46-1|immunoglobulin heavy variable (II)-46-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28365 ENSG00000253808 OTTHUMG00000151952 AB019438 NG_001019 IGHV(II)-46-1 +HGNC:5683 IGHVII-49-1 immunoglobulin heavy variable (II)-49-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-49-1 "immunoglobulin heavy variable (II)-49-1|immunoglobulin heavy variable (II)-49-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28364 ENSG00000253386 OTTHUMG00000151974 AB019438 NG_001019 IGHV(II)-49-1 +HGNC:5684 IGHVII-51-2 immunoglobulin heavy variable (II)-51-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-51-2 "immunoglobulin heavy variable (II)-51-2|immunoglobulin heavy variable (II)-51-2 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28363 ENSG00000253941 OTTHUMG00000151969 AB019438 NG_001019 PGOHUM00000247962 IGHV(II)-51-2 +HGNC:5685 IGHVII-53-1 immunoglobulin heavy variable (II)-53-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-53-1 "immunoglobulin heavy variable (II)-53-1|immunoglobulin heavy variable (II)-53-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28362 ENSG00000253714 OTTHUMG00000151954 AB019438 NG_001019 IGHV(II)-53-1 +HGNC:5686 IGHVII-60-1 immunoglobulin heavy variable (II)-60-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-60-1 "immunoglobulin heavy variable (II)-60-1|immunoglobulin heavy variable (II)-60-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28361 ENSG00000254329 OTTHUMG00000151951 AB019437 NG_001019 PGOHUM00000247972 IGHV(II)-60-1 +HGNC:5687 IGHVII-62-1 immunoglobulin heavy variable (II)-62-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-62-1 "immunoglobulin heavy variable (II)-62-1|immunoglobulin heavy variable (II)-62-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28360 ENSG00000253747 OTTHUMG00000151965 AB019437 NG_001019 IGHV(II)-62-1 +HGNC:5688 IGHVII-65-1 immunoglobulin heavy variable (II)-65-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-65-1 "immunoglobulin heavy variable (II)-65-1|immunoglobulin heavy variable (II)-65-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28359 ENSG00000253169 OTTHUMG00000151970 AB019437 NG_001019 IGHV(II)-65-1 +HGNC:5689 IGHVII-67-1 immunoglobulin heavy variable (II)-67-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-67-1 "immunoglobulin heavy variable (II)-67-1|immunoglobulin heavy variable (II)-67-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28358 ENSG00000253820 OTTHUMG00000151864 AB019437 NG_001019 IGHV(II)-67-1 +HGNC:5690 IGHVII-74-1 immunoglobulin heavy variable (II)-74-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-74-1 "immunoglobulin heavy variable (II)-74-1|immunoglobulin heavy variable (II)-74-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28357 ENSG00000254134 OTTHUMG00000151875 AB019437 NG_001019 IGHV(II)-74-1 +HGNC:5691 IGHVII-78-1 immunoglobulin heavy variable (II)-78-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(II)-78-1 "immunoglobulin heavy variable (II)-78-1|immunoglobulin heavy variable (II)-78-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28356 ENSG00000253674 OTTHUMG00000151863 AB019437 NG_001019 IGHV(II)-78-1 +HGNC:5695 IGHVIII-2-1 immunoglobulin heavy variable (III)-2-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-2-1 "immunoglobulin heavy variable (III)-2-1|immunoglobulin heavy variable (III)-2-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28355 ENSG00000253780 OTTHUMG00000152321 AB019441 NG_001019 IGHV(III)-2-1 +HGNC:5702 IGHVIII-5-1 immunoglobulin heavy variable (III)-5-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-5-1 "immunoglobulin heavy variable (III)-5-1|immunoglobulin heavy variable (III)-5-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28354 ENSG00000253387 OTTHUMG00000152274 AB019440 NG_001019 IGHV(III)-5-1 +HGNC:5703 IGHVIII-5-2 immunoglobulin heavy variable (III)-5-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-5-2 "immunoglobulin heavy variable (III)-5-2|immunoglobulin heavy variable (III)-5-2 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28353 ENSG00000254053 OTTHUMG00000152278 AB019440 NG_001019 IGHV(III)-5-2 +HGNC:5692 IGHVIII-11-1 immunoglobulin heavy variable (III)-11-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-11-1 "immunoglobulin heavy variable (III)-11-1|immunoglobulin heavy variable (III)-11-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28352 ENSG00000254215 OTTHUMG00000152296 AB019440 NG_001019 IGHV(III)-11-1 +HGNC:5693 IGHVIII-13-1 immunoglobulin heavy variable (III)-13-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-13-1 "immunoglobulin heavy variable (III)-13-1|immunoglobulin heavy variable (III)-13-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28351 ENSG00000253412 OTTHUMG00000152272 AB019440 NG_001019 IGHV(III)-13-1 +HGNC:5694 IGHVIII-16-1 immunoglobulin heavy variable (III)-16-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-16-1 "immunoglobulin heavy variable (III)-16-1|immunoglobulin heavy variable (III)-16-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2015-02-02 28350 AB019440 NG_001019 PGOHUM00000292480 IGHV(III)-16-1 +HGNC:5696 IGHVIII-22-2 immunoglobulin heavy variable (III)-22-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-22-2 "immunoglobulin heavy variable (III)-22-2|immunoglobulin heavy variable (III)-22-2 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28349 ENSG00000254045 OTTHUMG00000152060 AB019439 NG_001019 IGHV(III)-22-2 +HGNC:5697 IGHVIII-25-1 immunoglobulin heavy variable (III)-25-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-25-1 "immunoglobulin heavy variable (III)-25-1|immunoglobulin heavy variable (III)-25-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28348 ENSG00000253367 OTTHUMG00000152072 AB019439 NG_001019 IGHV(III)-25-1 +HGNC:5698 IGHVIII-26-1 immunoglobulin heavy variable (III)-26-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-26-1 "immunoglobulin heavy variable (III)-26-1|immunoglobulin heavy variable (III)-26-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28347 ENSG00000253462 OTTHUMG00000152059 AB019439 NG_001019 IGHV(III)-26-1 +HGNC:5699 IGHVIII-38-1 immunoglobulin heavy variable (III)-38-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-38-1 "immunoglobulin heavy variable (III)-38-1|immunoglobulin heavy variable (III)-38-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28346 ENSG00000253989 OTTHUMG00000152090 AB019439 NG_001019 IGHV(III)-38-1 +HGNC:5700 IGHVIII-44 immunoglobulin heavy variable (III)-44 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-44 "immunoglobulin heavy variable (III)-44|immunoglobulin heavy variable (III)-44 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2016-10-04 28345 ENSG00000283562 OTTHUMG00000152065 M99673 NG_001019 IGHV(III)-44 +HGNC:5701 IGHVIII-47-1 immunoglobulin heavy variable (III)-47-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-47-1 "immunoglobulin heavy variable (III)-47-1|immunoglobulin heavy variable (III)-47-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28344 ENSG00000253862 OTTHUMG00000151949 AB019438 NG_001019 IGHV(III)-47-1 +HGNC:5704 IGHVIII-51-1 immunoglobulin heavy variable (III)-51-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-51-1 "immunoglobulin heavy variable (III)-51-1|immunoglobulin heavy variable (III)-51-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28343 ENSG00000254167 OTTHUMG00000151957 AB019438 NG_001019 PGOHUM00000247961 IGHV(III)-51-1 +HGNC:5705 IGHVIII-67-2 immunoglobulin heavy variable (III)-67-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-67-2 "immunoglobulin heavy variable (III)-67-2|immunoglobulin heavy variable (III)-67-2 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28342 ENSG00000254036 OTTHUMG00000151861 AB019437 NG_001019 IGHV(III)-67-2 +HGNC:5706 IGHVIII-67-3 immunoglobulin heavy variable (III)-67-3 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-67-3 "immunoglobulin heavy variable (III)-67-3|immunoglobulin heavy variable (III)-67-3 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28341 ENSG00000253635 OTTHUMG00000151879 AB019437 NG_001019 IGHV(III)-67-3 +HGNC:5707 IGHVIII-67-4 immunoglobulin heavy variable (III)-67-4 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-67-4 "immunoglobulin heavy variable (III)-67-4|immunoglobulin heavy variable (III)-67-4 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28340 ENSG00000254052 OTTHUMG00000151874 AB019437 NG_001019 IGHV(III)-67-4 +HGNC:5708 IGHVIII-76-1 immunoglobulin heavy variable (III)-76-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-76-1 "immunoglobulin heavy variable (III)-76-1|immunoglobulin heavy variable (III)-76-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28339 ENSG00000253310 OTTHUMG00000151872 AB019437 NG_001019 PGOHUM00000247990 IGHV(III)-76-1 +HGNC:5709 IGHVIII-82 immunoglobulin heavy variable (III)-82 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(III)-82 "immunoglobulin heavy variable (III)-82|immunoglobulin heavy variable (III)-82 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28338 ENSG00000253303 OTTHUMG00000151732 AB019437 NG_001019 PGOHUM00000247994 IGHV(III)-82 +HGNC:5710 IGHVIV-44-1 immunoglobulin heavy variable (IV)-44-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 14q32.33 14q32.33 IGHV(IV)-44-1 "immunoglobulin heavy variable (IV)-44-1|immunoglobulin heavy variable (IV)-44-1 pseudogene" Immunoglobulin heavy locus at 14q32.33 349 2000-04-17 2011-04-15 2012-02-08 28337 ENSG00000253465 OTTHUMG00000152064 AB019438 NG_001019 IGHV(IV)-44-1 +HGNC:5711 IGHVOR15@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-10 +HGNC:5712 IGHVOR16@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-10 +HGNC:33847 IGIP IgA inducing protein protein-coding gene gene with protein product Approved 5q31.3 05q31.3 LOC492311 C5orf53 "chromosome 5 open reading frame 53|IgA-inducing protein homolog (Bos taurus)" 2009-02-16 2011-09-22 2016-06-13 2016-10-05 492311 ENSG00000182700 OTTHUMG00000163359 uc003lfb.2 "AB073888|BC017422|BC041380" NM_001007189 CCDS34244 A6NJ69 "19201837|12874223|21074276" MGI:1924271 RGD:2323374 +HGNC:5714 IGJP1 immunoglobulin J polypeptide pseudogene 1 pseudogene pseudogene Approved 8q21.2 08q21.2 1994-12-08 2014-11-19 3513 ENSG00000253655 OTTHUMG00000164783 S74134 NG_009863 7916122 PGOHUM00000249416 +HGNC:5715 IGK immunoglobulin kappa locus protein-coding gene gene with protein product Approved 2p11.2 02p11.2 IGK@ Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2013-03-05 2013-03-05 50802 NG_000833 +HGNC:5716 IGKC immunoglobulin kappa constant other immunoglobulin gene Approved 2p11.2 02p11.2 HCAK1 Immunoglobulin kappa locus at 2p11.2 351 2001-06-22 2014-11-19 3514 ENSG00000211592 OTTHUMG00000151684 uc284ppo.1 J00241 NG_000834 P01834 10354514 RGD:1562743 IMGT; the international ImMunoGeneTics information system ®|http://www.imgt.org 147200 270009 IGKC +HGNC:5717 IGKDEL immunoglobulin kappa deleting element or like other unknown Approved 2q11-q13 02q11-q13 IGKDE 2001-06-22 2012-10-02 3515 X03957 NG_000834 3086844 146780 +HGNC:5719 IGKJ1 immunoglobulin kappa joining 1 other immunoglobulin gene Approved 2p11.2 02p11.2 J1 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28950 ENSG00000211597 OTTHUMG00000151679 uc061lqh.1 J00242 NG_000834 IGKJ1 +HGNC:5720 IGKJ2 immunoglobulin kappa joining 2 other immunoglobulin gene Approved 2p11.2 02p11.2 J2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28949 ENSG00000211596 OTTHUMG00000151691 uc061lqg.1 J00242 NG_000834 IGKJ2 +HGNC:5721 IGKJ3 immunoglobulin kappa joining 3 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28948 ENSG00000211595 OTTHUMG00000151680 uc061lqf.1 J00242 NG_000834 IGKJ3 +HGNC:5722 IGKJ4 immunoglobulin kappa joining 4 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28947 ENSG00000211594 OTTHUMG00000151695 uc061lqe.1 J00242 NG_000834 IGKJ4 +HGNC:5723 IGKJ5 immunoglobulin kappa joining 5 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-10-05 28946 ENSG00000211593 OTTHUMG00000151676 uc061lqd.1 J00242 NG_000834 IGKJ5 +HGNC:5718 IGKJ@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-05 +HGNC:5741 IGKV1-5 immunoglobulin kappa variable 1-5 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28299 ENSG00000243466 OTTHUMG00000151560 uc061lqk.1 Z00001 NG_000834 P01602 IGKV1-5 +HGNC:5742 IGKV1-6 immunoglobulin kappa variable 1-6 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-10 28943 ENSG00000239855 OTTHUMG00000151559 uc061lql.1 M64858 NG_000834 IGKV1-6 +HGNC:5743 IGKV1-8 immunoglobulin kappa variable 1-8 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV18|L9" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-10 28942 ENSG00000240671 OTTHUMG00000151634 uc284ppp.1 Z00014 NG_000834 IGKV1-8 +HGNC:5744 IGKV1-9 immunoglobulin kappa variable 1-9 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV19|L8" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-10 28941 ENSG00000241755 OTTHUMG00000151637 uc061lqo.1 Z00013 NG_000834 IGKV1-9 +HGNC:5730 IGKV1-12 immunoglobulin kappa variable 1-12 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV112|L19" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-10 28940 ENSG00000243290 OTTHUMG00000151643 uc284ppq.1 V01577 NG_000834 IGKV1-12 +HGNC:5731 IGKV1-13 immunoglobulin kappa variable 1-13 (gene/pseudogene) other immunoglobulin gene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 1-13 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-12 2012-02-08 28939 ENSG00000253497 OTTHUMG00000151647 Z00010 NG_000834 IGKV1-13 +HGNC:5732 IGKV1-16 immunoglobulin kappa variable 1-16 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV116|L1" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-10 28938 ENSG00000240864 OTTHUMG00000151649 uc061lqs.1 J00248 NG_000834 IGKV1-16 +HGNC:5733 IGKV1-17 immunoglobulin kappa variable 1-17 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV117|A30" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28937 ENSG00000240382 OTTHUMG00000151650 uc061lqt.1 X72808 NG_000834 P01599 IGKV1-17 +HGNC:5734 IGKV1-22 immunoglobulin kappa variable 1-22 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 1-22|immunoglobulin kappa variable 1-22 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28936 ENSG00000253578 OTTHUMG00000151646 X71885 NG_000834 PGOHUM00000240154 IGKV1-22 +HGNC:5735 IGKV1-27 immunoglobulin kappa variable 1-27 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV127|A20" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-10 28935 ENSG00000244575 OTTHUMG00000151640 uc061lqx.1 X63398 NG_000834 IGKV1-27 +HGNC:5736 IGKV1-32 immunoglobulin kappa variable 1-32 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 1-32|immunoglobulin kappa variable 1-32 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28934 ENSG00000253870 OTTHUMG00000151687 X71883 NG_000834 PGOHUM00000240163 IGKV1-32 +HGNC:5737 IGKV1-33 immunoglobulin kappa variable 1-33 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV133|O18" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-10 28933 ENSG00000242076 OTTHUMG00000151682 uc061lrb.1 M64856 NG_000834 IGKV1-33 +HGNC:5738 IGKV1-35 immunoglobulin kappa variable 1-35 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 1-35|immunoglobulin kappa variable 1-35 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28932 ENSG00000253461 OTTHUMG00000151681 X71890 NG_000834 PGOHUM00000240166 IGKV1-35 +HGNC:5739 IGKV1-37 immunoglobulin kappa variable 1-37 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV137|O14" immunoglobulin kappa variable 1-37 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-15 2012-02-08 28931 ENSG00000239862 OTTHUMG00000151689 uc061lrc.1 X59316 NG_000834 IGKV1-37 +HGNC:5740 IGKV1-39 immunoglobulin kappa variable 1-39 (gene/pseudogene) other immunoglobulin gene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 1-39 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-12 2012-02-08 28930 ENSG00000242371 OTTHUMG00000151678 uc061lrd.1 X59315 NG_000834 IGKV1-39 +HGNC:5759 IGKV1D-8 immunoglobulin kappa variable 1D-8 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28904 ENSG00000239819 OTTHUMG00000151570 uc061lse.1 Z00008 NG_000833 IGKV1D-8 +HGNC:5746 IGKV1D-12 immunoglobulin kappa variable 1D-12 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2015-02-02 28903 ENSG00000278857 OTTHUMG00000188272 uc061lsb.1 X17263 NG_000833 IGKV1D-12 +HGNC:5747 IGKV1D-13 immunoglobulin kappa variable 1D-13 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2015-02-02 28902 ENSG00000276566 OTTHUMG00000188271 uc061lsa.1 X17262 NG_000833 IGKV1D-13 +HGNC:5748 IGKV1D-16 immunoglobulin kappa variable 1D-16 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28901 ENSG00000241244 OTTHUMG00000151569 uc061lrx.1 K01323 NG_000833 P01601 IGKV1D-16 +HGNC:5749 IGKV1D-17 immunoglobulin kappa variable 1D-17 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28900 ENSG00000242766 OTTHUMG00000151610 uc061lrw.1 X63392 NG_000833 IGKV1D-17 +HGNC:5750 IGKV1D-22 immunoglobulin kappa variable 1D-22 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 1D-22 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2013-02-18 28899 ENSG00000253365 OTTHUMG00000151604 X71887 NG_000833 PGOHUM00000240746 IGKV1D-22 +HGNC:5751 IGKV1D-27 immunoglobulin kappa variable 1D-27 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 1D-27 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28898 ENSG00000224607 OTTHUMG00000151607 Z00004 NG_000833 PGOHUM00000240740 IGKV1D-27 +HGNC:5752 IGKV1D-32 immunoglobulin kappa variable 1D-32 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 1D-32 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28897 ENSG00000253191 OTTHUMG00000151614 X71896 NG_000833 PGOHUM00000240735 IGKV1D-32 +HGNC:5753 IGKV1D-33 immunoglobulin kappa variable 1D-33 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28896 ENSG00000239975 OTTHUMG00000151602 uc061lrl.1 M64855 NG_000833 IGKV1D-33 +HGNC:5754 IGKV1D-35 immunoglobulin kappa variable 1D-35 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 1D-35|immunoglobulin kappa variable 1D-35 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28895 ENSG00000232747 OTTHUMG00000151603 X71894 NG_000833 PGOHUM00000240731 IGKV1D-35 +HGNC:5755 IGKV1D-37 immunoglobulin kappa variable 1D-37 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV1D37|O4" immunoglobulin kappa variable 1D-37 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-09 2012-02-10 28894 ENSG00000250036 OTTHUMG00000159960 uc061lrk.1 X71893 NG_000833 IGKV1D-37 +HGNC:5756 IGKV1D-39 immunoglobulin kappa variable 1D-39 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28893 ENSG00000251546 OTTHUMG00000159962 uc061lrj.1 X59312 NG_000833 IGKV1D-39 +HGNC:5757 IGKV1D-42 immunoglobulin kappa variable 1D-42 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 1D-42 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-09 2012-02-08 28892 ENSG00000211633 OTTHUMG00000151573 uc061lsc.1 X72816 NG_000833 IGKV1D-42 +HGNC:5758 IGKV1D-43 immunoglobulin kappa variable 1D-43 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-10-03 28891 ENSG00000242580 OTTHUMG00000151572 uc061lsd.1 X72817 NG_000833 IGKV1D-43 +HGNC:5761 IGKV1OR-2 immunoglobulin kappa variable 1/OR-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 9q13 09q13 IGKV1/OR-2 IGKVPZ2 "immunoglobulin kappa variable 1/OR-2|immunoglobulin kappa variable 1/OR-2 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2016-10-05 3532 ENSG00000156755 OTTHUMG00000013330 X64640 NG_011657 2853098 PGOHUM00000267973 IGKV1/OR-2 +HGNC:5762 IGKV1OR-3 immunoglobulin kappa variable 1/OR-3 (pseudogene) pseudogene immunoglobulin pseudogene Approved 9q12 09q12 IGKV1/OR-3 IGKVPZ3 "immunoglobulin kappa variable 1/OR-3|immunoglobulin kappa variable 1/OR-3 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-06 644731 ENSG00000204776 OTTHUMG00000013335 X64641 1596359 PGOHUM00000250504 IGKV1/OR-3 +HGNC:5763 IGKV1OR-4 immunoglobulin kappa variable 1/OR-4 (pseudogene) pseudogene immunoglobulin pseudogene Approved reserved reserved IGKV1/OR-4 IGKVPZ4 "immunoglobulin kappa variable 1/OR-4|immunoglobulin kappa variable 1/OR-4 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2012-01-20 3534 X64642 1596359 IGKV1/OR-4 +HGNC:5764 IGKV1OR1-1 immunoglobulin kappa variable 1/OR1-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 1q21.1 01q21.1 IGKV1/OR1-1 IGKVP1 "immunoglobulin kappa variable 1/OR1-1|immunoglobulin kappa variable 1/OR1-1 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2016-10-11 3525 ENSG00000276674 OTTHUMG00000184566 M20809 NG_011766 2853099 IGKV1/OR1-1 +HGNC:5766 IGKV1OR2-0 immunoglobulin kappa variable 1/OR2-0 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 IGKV1/OR2-0 immunoglobulin kappa variable 1/OR2-0 Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2008-09-11 2012-01-20 28867 Y08392 IGKV1/OR2-0 +HGNC:5760 IGKV1OR2-1 immunoglobulin kappa variable 1/OR2-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.1 02p11.1 "IGKV1/OR-1|IGKV1/OR2-1" "IGKVPZ1|IGKV1OR-1" "immunoglobulin kappa variable 1/OR-1|immunoglobulin kappa variable 1/OR-1 pseudogene|immunoglobulin kappa variable 1/OR-1 (pseudogene)" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2014-04-09 2014-04-09 2014-04-09 3531 ENSG00000235235 OTTHUMG00000155081 Z12367 2853098 PGOHUM00000267928 IGKV1/OR2-1 +HGNC:49465 IGKV1OR2-2 immunoglobulin kappa variable 1/OR2-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.1 02p11.1 IGKV1/OR2-2 2014-01-10 2014-01-10 106481689 ENSG00000223816 OTTHUMG00000155090 NG_046320 PGOHUM00000267926 IGKV1/OR2-2 +HGNC:5769 IGKV1OR2-3 immunoglobulin kappa variable 1/OR2-3 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV1/OR2-3 "immunoglobulin kappa variable 1/OR2-3|immunoglobulin kappa variable 1/OR2-3 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-06 28866 ENSG00000204670 OTTHUMG00000155330 X05102 3037085 PGOHUM00000240806 IGKV1/OR2-3 +HGNC:5770 IGKV1OR2-6 immunoglobulin kappa variable 1/OR2-6 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV1/OR2-6 "immunoglobulin kappa variable 1/OR2-6|immunoglobulin kappa variable 1/OR2-6 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-06 28865 ENSG00000271569 OTTHUMG00000184513 X05103 3037085 PGOHUM00000240221 IGKV1/OR2-6 +HGNC:5771 IGKV1OR2-9 immunoglobulin kappa variable 1/OR2-9 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV1/OR2-9 "immunoglobulin kappa variable 1/OR2-9|immunoglobulin kappa variable 1/OR2-9 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-06 28864 ENSG00000271351 OTTHUMG00000184517 X51879 2111145 PGOHUM00000250468 IGKV1/OR2-9 +HGNC:5768 IGKV1OR2-11 immunoglobulin kappa variable 1/OR2-11 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV1/OR2-11 "immunoglobulin kappa variable 1/OR2-11|immunoglobulin kappa variable 1/OR2-11 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-06 28863 ENSG00000270187 OTTHUMG00000184518 X51885 2111145 PGOHUM00000250441 IGKV1/OR2-11 +HGNC:5767 IGKV1OR2-108 immunoglobulin kappa variable 1/OR2-108 (non-functional) other immunoglobulin gene Approved 2q12-q14 02q12-q14 "IGKV1/OR2-108|IGKV1OR2108|IGO1" immunoglobulin orphon (transposed element) 1 immunoglobulin kappa variable 1/OR2-108 Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2008-09-11 2013-12-06 28862 ENSG00000231292 OTTHUMG00000153338 uc061ndg.1 X51887 2114012 147185 IGKV1/OR2-108 +HGNC:37488 IGKV1OR2-118 immunoglobulin kappa variable 1/OR2-118 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 IGKV1/OR2-118 immunoglobulin kappa variable 1/OR2-118 pseudogene Immunoglobulin kappa (IGK) orphons 352 2009-11-04 2011-04-15 2015-01-20 339562 ENSG00000270999 OTTHUMG00000184560 NG_011659 PGOHUM00000297985 IGKV1/OR2-118 +HGNC:49473 IGKV1OR9-1 immunoglobulin kappa variable 1/OR9-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 9q21.11 09q21.11 IGKV1/OR9-1 2014-01-10 2014-01-10 2014-04-09 103352540 ENSG00000204780 OTTHUMG00000013334 NG_034159 PGOHUM00000267974 IGKV1/OR9-1 +HGNC:49466 IGKV1OR9-2 immunoglobulin kappa variable 1/OR9-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 9p12 09p12 IGKV1/OR9-2 2014-01-10 2014-01-10 106480274 ENSG00000225380 OTTHUMG00000066755 NG_046317 PGOHUM00000250523 IGKV1/OR9-2 +HGNC:44978 IGKV1OR10-1 immunoglobulin kappa variable 1/OR10-1 (pseudogene) pseudogene pseudogene Approved 10q11.21 10q11.21 IGKV1/OR10-1 immunoglobulin heavy variable 1/OR10-1 (pseudogene) Immunoglobulin kappa (IGK) orphons 352 2013-01-04 2013-12-13 2013-12-13 642424 ENSG00000237592 OTTHUMG00000018005 PGOHUM00000264422 IGKV1/OR10-1 +HGNC:5765 IGKV1OR15-118 immunoglobulin kappa variable 1/OR15-118 (pseudogene) pseudogene immunoglobulin pseudogene Approved 15 not on reference assembly 15 not on reference assembly "IGKV1/OR-118|IGKV1/OR15-118" IGKVP2 "immunoglobulin kappa variable 1/OR15-118|immunoglobulin kappa variable 1/OR15-118 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2015-04-01 100312985 IGKV1/OR15-118 +HGNC:5772 IGKV1OR22-1 immunoglobulin kappa variable 1/OR22-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.1 22q11.1 IGKV1/OR22-1 IGKVP5 "immunoglobulin kappa variable 1/OR22-1|immunoglobulin kappa variable 1/OR22-1 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2016-10-05 3530 ENSG00000253481 OTTHUMG00000149996 Z00040 NG_011658 PGOHUM00000256995 IGKV1/OR22-1 +HGNC:5773 IGKV1OR22-5 immunoglobulin kappa variable 1/OR22-5 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11 22q11 "IGKV1/OR22-5|IGKV1/OR22-5A" "IGKVP7|IGKV1OR22-5A" "immunoglobulin kappa variable 1/OR22-5|immunoglobulin kappa variable 1/OR22-5 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-06 28850 ENSG00000230481 OTTHUMG00000147349 Z00003 6087279 PGOHUM00000264476 IGKV1/OR22-5 +HGNC:37729 IGKV1ORY-1 immunoglobulin kappa variable 1/ORY-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved Yq11.21 Yq11.21 IGKV1/ORY-1 immunoglobulin kappa variable 1/ORY-1 pseudogene Immunoglobulin kappa (IGK) orphons 352 2010-02-10 2011-04-15 2013-02-18 439957 PGOHUM00000233742 IGKV1/ORY-1 +HGNC:5788 IGKV2-4 immunoglobulin kappa variable 2-4 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-4|immunoglobulin kappa variable 2-4 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28929 ENSG00000253435 OTTHUMG00000151536 X72814 NG_000834 PGOHUM00000250432 IGKV2-4 +HGNC:5776 IGKV2-10 immunoglobulin kappa variable 2-10 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-10|immunoglobulin kappa variable 2-10 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-10-16 28928 ENSG00000253278 OTTHUMG00000151635 Z00012 NG_000834 PGOHUM00000261336 IGKV2-10 +HGNC:5777 IGKV2-14 immunoglobulin kappa variable 2-14 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-14|immunoglobulin kappa variable 2-14 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-10-16 28927 ENSG00000253265 OTTHUMG00000151642 X72810 NG_000834 PGOHUM00000261337 IGKV2-14 +HGNC:5778 IGKV2-18 immunoglobulin kappa variable 2-18 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-18|immunoglobulin kappa variable 2-18 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2014-11-19 28926 ENSG00000254157 OTTHUMG00000151644 X63400 NG_000834 PGOHUM00000240151 IGKV2-18 +HGNC:5779 IGKV2-19 immunoglobulin kappa variable 2-19 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-19|immunoglobulin kappa variable 2-19 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28925 ENSG00000253732 OTTHUMG00000151651 X12692 NG_000834 PGOHUM00000250435 IGKV2-19 +HGNC:5780 IGKV2-23 immunoglobulin kappa variable 2-23 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-23|immunoglobulin kappa variable 2-23 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28924 ENSG00000253625 OTTHUMG00000151638 X71885 NG_000834 PGOHUM00000240155 IGKV2-23 +HGNC:5781 IGKV2-24 immunoglobulin kappa variable 2-24 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2014-11-19 28923 ENSG00000241294 OTTHUMG00000151655 uc061lqw.1 X12684 NG_000834 IGKV2-24 +HGNC:5782 IGKV2-26 immunoglobulin kappa variable 2-26 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-26|immunoglobulin kappa variable 2-26 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28922 ENSG00000254098 OTTHUMG00000151648 X71884 NG_000834 PGOHUM00000240158 IGKV2-26 +HGNC:5783 IGKV2-28 immunoglobulin kappa variable 2-28 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28921 ENSG00000244116 OTTHUMG00000151652 uc061lqy.1 X63397 NG_000834 IGKV2-28 +HGNC:5784 IGKV2-29 immunoglobulin kappa variable 2-29 (gene/pseudogene) other immunoglobulin gene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 2-29 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-12 2012-02-08 28920 ENSG00000253998 OTTHUMG00000151641 X63396 NG_000834 PGOHUM00000240161 IGKV2-29 +HGNC:5785 IGKV2-30 immunoglobulin kappa variable 2-30 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28919 ENSG00000243238 OTTHUMG00000151692 uc061lqz.1 X63403 NG_000834 IGKV2-30 +HGNC:5786 IGKV2-36 immunoglobulin kappa variable 2-36 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-36|immunoglobulin kappa variable 2-36 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28918 ENSG00000253487 OTTHUMG00000151683 X71889 NG_000834 PGOHUM00000250438 IGKV2-36 +HGNC:5787 IGKV2-38 immunoglobulin kappa variable 2-38 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2-38|immunoglobulin kappa variable 2-38 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28917 ENSG00000253592 OTTHUMG00000151685 X71888 NG_000834 PGOHUM00000240169 IGKV2-38 +HGNC:5789 IGKV2-40 immunoglobulin kappa variable 2-40 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2015-02-02 28916 ENSG00000273962 OTTHUMG00000188265 uc061lrf.1 X59314 NG_000834 IGKV2-40 +HGNC:5792 IGKV2D-10 immunoglobulin kappa variable 2D-10 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2D-10|immunoglobulin kappa variable 2D-10 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-10-16 28890 ENSG00000253906 OTTHUMG00000151567 X17265 NG_000833 PGOHUM00000261361 IGKV2D-10 +HGNC:5793 IGKV2D-14 immunoglobulin kappa variable 2D-14 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2D-14|immunoglobulin kappa variable 2D-14 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-10-16 28889 ENSG00000254292 OTTHUMG00000151565 X72811 NG_000833 PGOHUM00000261360 IGKV2D-14 +HGNC:5794 IGKV2D-18 immunoglobulin kappa variable 2D-18 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2D-18|immunoglobulin kappa variable 2D-18 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28888 ENSG00000254220 OTTHUMG00000151620 X63395 NG_000833 PGOHUM00000240750 IGKV2D-18 +HGNC:5795 IGKV2D-19 immunoglobulin kappa variable 2D-19 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2D-19|immunoglobulin kappa variable 2D-19 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28887 ENSG00000253765 OTTHUMG00000151617 X71882 NG_000833 PGOHUM00000240749 IGKV2D-19 +HGNC:5796 IGKV2D-23 immunoglobulin kappa variable 2D-23 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2D-23|immunoglobulin kappa variable 2D-23 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28886 ENSG00000254345 OTTHUMG00000151605 X71887 NG_000833 PGOHUM00000240745 IGKV2D-23 +HGNC:5797 IGKV2D-24 immunoglobulin kappa variable 2D-24 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 2D-24 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-10 2012-02-08 28885 ENSG00000241566 OTTHUMG00000151618 uc061lrs.1 X63401 NG_000833 IGKV2D-24 +HGNC:5798 IGKV2D-26 immunoglobulin kappa variable 2D-26 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28884 ENSG00000211623 OTTHUMG00000151606 uc061lrr.1 X12689 NG_000833 IGKV2D-26 +HGNC:5799 IGKV2D-28 immunoglobulin kappa variable 2D-28 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28883 ENSG00000242534 OTTHUMG00000151616 uc061lrp.1 X12691 NG_000833 IGKV2D-28 +HGNC:5800 IGKV2D-29 immunoglobulin kappa variable 2D-29 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28882 ENSG00000243264 OTTHUMG00000151619 uc061lro.1 M31952 NG_000833 IGKV2D-29 +HGNC:5801 IGKV2D-30 immunoglobulin kappa variable 2D-30 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28881 ENSG00000239571 OTTHUMG00000151613 uc061lrn.1 X63402 NG_000833 IGKV2D-30 +HGNC:5802 IGKV2D-36 immunoglobulin kappa variable 2D-36 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2D-36|immunoglobulin kappa variable 2D-36 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28880 ENSG00000253127 OTTHUMG00000151611 X71893 NG_000833 PGOHUM00000240730 IGKV2D-36 +HGNC:5803 IGKV2D-38 immunoglobulin kappa variable 2D-38 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 2D-38|immunoglobulin kappa variable 2D-38 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28879 ENSG00000254009 OTTHUMG00000159961 X71892 NG_000833 PGOHUM00000240729 IGKV2D-38 +HGNC:5804 IGKV2D-40 immunoglobulin kappa variable 2D-40 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28878 ENSG00000251039 OTTHUMG00000159963 uc061lrh.1 X59311 NG_000833 IGKV2D-40 +HGNC:5805 IGKV2OR2-1 immunoglobulin kappa variable 2/OR2-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 "IGKV2/OR2-1|IGKV2/OR2-1A" IGKV2OR2-1A "immunoglobulin kappa variable 2/OR2-1|immunoglobulin kappa variable 2/OR2-1 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-06 28861 ENSG00000270748 OTTHUMG00000155332 X05101 8011175 PGOHUM00000240804 IGKV2/OR2-1 +HGNC:5808 IGKV2OR2-2 immunoglobulin kappa variable 2/OR2-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV2/OR2-2 "immunoglobulin kappa variable 2/OR2-2|immunoglobulin kappa variable 2/OR2-2 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-13 28859 ENSG00000271402 OTTHUMG00000155326 X51884 2111145 PGOHUM00000240805 IGKV2/OR2-2 +HGNC:5809 IGKV2OR2-4 immunoglobulin kappa variable 2/OR2-4 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV2/OR2-4 "immunoglobulin kappa variable 2/OR2-4|immunoglobulin kappa variable 2/OR2-4 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-09-19 28858 X51883 2111145 IGKV2/OR2-4 +HGNC:5810 IGKV2OR2-7 immunoglobulin kappa variable 2/OR2-7 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV2/OR2-7 "immunoglobulin kappa variable 2/OR2-7|immunoglobulin kappa variable 2/OR2-7 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2015-08-26 652873 ENSG00000270450 OTTHUMG00000184523 X51881 NG_011671 PGOHUM00000298583 IGKV2/OR2-7 +HGNC:37489 IGKV2OR2-7D immunoglobulin kappa variable 2/OR2-7D (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV2/OR2-7D immunoglobulin kappa variable 2/OR2-7D pseudogene Immunoglobulin kappa (IGK) orphons 352 2009-11-04 2011-04-15 2015-08-26 100310869 ENSG00000271015 OTTHUMG00000184526 X51881 NG_033269 PGOHUM00000298038 IGKV2/OR2-7D +HGNC:5811 IGKV2OR2-8 immunoglobulin kappa variable 2/OR2-8 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV2/OR2-8 "immunoglobulin kappa variable 2/OR2-8|immunoglobulin kappa variable 2/OR2-8 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2015-02-02 100996600 ENSG00000278537 OTTHUMG00000188277 X51880 NG_011662 IGKV2/OR2-8 +HGNC:5806 IGKV2OR2-10 immunoglobulin kappa variable 2/OR2-10 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV2/OR2-10 "immunoglobulin kappa variable 2/OR2-10|immunoglobulin kappa variable 2/OR2-10 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2015-02-02 28855 ENSG00000276050 OTTHUMG00000188278 X51886 NG_011661 PGOHUM00000298037 IGKV2/OR2-10 +HGNC:5812 IGKV2OR22-3 immunoglobulin kappa variable 2/OR22-3 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.1 22q11.1 IGKV2/OR22-3 IGKVP4 "immunoglobulin kappa variable 2/OR22-3|immunoglobulin kappa variable 2/OR22-3 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2016-10-05 3529 ENSG00000253460 OTTHUMG00000149994 Z00041 NG_011670 PGOHUM00000246208 IGKV2/OR22-3 +HGNC:5813 IGKV2OR22-4 immunoglobulin kappa variable 2/OR22-4 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.1 22q11.1 IGKV2/OR22-4 IGKVP6 "immunoglobulin kappa variable 2/OR22-4|immunoglobulin kappa variable 2/OR22-4 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2016-10-05 28847 ENSG00000253691 OTTHUMG00000149991 M20707 NG_011660 PGOHUM00000246207 IGKV2/OR22-4 +HGNC:5821 IGKV3-7 immunoglobulin kappa variable 3-7 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 3-7 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-10 2012-02-08 28915 ENSG00000243063 OTTHUMG00000151636 uc061lqm.1 X02725 NG_000834 IGKV3-7 +HGNC:5815 IGKV3-11 immunoglobulin kappa variable 3-11 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28914 ENSG00000241351 OTTHUMG00000151633 uc061lqp.1 X01668 NG_000834 IGKV3-11 +HGNC:5816 IGKV3-15 immunoglobulin kappa variable 3-15 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28913 ENSG00000244437 OTTHUMG00000151653 uc061lqr.1 M23090 NG_000834 IGKV3-15 +HGNC:5817 IGKV3-20 immunoglobulin kappa variable 3-20 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28912 ENSG00000239951 OTTHUMG00000151639 uc061lqu.1 X12686 NG_000834 IGKV3-20 +HGNC:5818 IGKV3-25 immunoglobulin kappa variable 3-25 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 3-25|immunoglobulin kappa variable 3-25 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28911 ENSG00000253202 OTTHUMG00000151645 X06583 NG_000834 IGKV3-25 +HGNC:5819 IGKV3-31 immunoglobulin kappa variable 3-31 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 3-31|immunoglobulin kappa variable 3-31 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28910 ENSG00000253158 OTTHUMG00000151688 X71883 NG_000834 PGOHUM00000240162 IGKV3-31 +HGNC:5820 IGKV3-34 immunoglobulin kappa variable 3-34 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 3-34|immunoglobulin kappa variable 3-34 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28909 ENSG00000253860 OTTHUMG00000151693 X71891 NG_000834 PGOHUM00000240164 IGKV3-34 +HGNC:5829 IGKV3D-7 immunoglobulin kappa variable 3D-7 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2015-01-20 28877 ENSG00000228325 OTTHUMG00000184555 uc061lsf.1 X72820 NG_000833 IGKV3D-7 +HGNC:5823 IGKV3D-11 immunoglobulin kappa variable 3D-11 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2014-11-19 28876 ENSG00000211632 OTTHUMG00000151563 uc032nuq.2 X17264 NG_000833 IGKV3D-11 +HGNC:5824 IGKV3D-15 immunoglobulin kappa variable 3D-15 (gene/pseudogene) other immunoglobulin gene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 3D-15 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-12 2012-02-08 28875 ENSG00000224041 OTTHUMG00000151568 uc061lry.1 X72815 NG_000833 IGKV3D-15 +HGNC:5825 IGKV3D-20 immunoglobulin kappa variable 3D-20 other immunoglobulin gene Approved 2p11.2 02p11.2 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-08 28874 ENSG00000211625 OTTHUMG00000151615 uc061lru.1 X12687 NG_000833 IGKV3D-20 +HGNC:5826 IGKV3D-25 immunoglobulin kappa variable 3D-25 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 3D-25|immunoglobulin kappa variable 3D-25 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28873 ENSG00000254097 OTTHUMG00000151609 X71886 NG_000833 PGOHUM00000257043 IGKV3D-25 +HGNC:5827 IGKV3D-31 immunoglobulin kappa variable 3D-31 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 3D-31|immunoglobulin kappa variable 3D-31 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28872 ENSG00000253999 OTTHUMG00000151612 X71896 NG_000833 PGOHUM00000240736 IGKV3D-31 +HGNC:5828 IGKV3D-34 immunoglobulin kappa variable 3D-34 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 3D-34|immunoglobulin kappa variable 3D-34 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-08 28871 ENSG00000253501 OTTHUMG00000151601 X71895 NG_000833 PGOHUM00000240733 IGKV3D-34 +HGNC:5832 IGKV3OR2-5 immunoglobulin kappa variable 3/OR2-5 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2q11.2 02q11.2 IGKV3/OR2-5 "immunoglobulin kappa variable 3/OR2-5|immunoglobulin kappa variable 3/OR2-5 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2013-12-13 28854 ENSG00000270252 OTTHUMG00000184519 X51882 PGOHUM00000250442 IGKV3/OR2-5 +HGNC:5830 IGKV3OR2-268 immunoglobulin kappa variable 3/OR2-268 (non-functional) other immunoglobulin gene Approved 2p12 02p12 "IGKV3/OR2-268|IGKV3/OR2-268A" "IGKV268|IGKV3OR2-268A" immunoglobulin kappa variable 3/OR2-268 Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2008-09-10 2013-12-06 3523 ENSG00000233999 OTTHUMG00000153256 uc021vkj.3 X74459 7959772 IGKV3/OR2-268 +HGNC:5833 IGKV3OR22-2 immunoglobulin kappa variable 3/OR22-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.1 22q11.1 IGKV3/OR22-2 IGKVP3 "immunoglobulin kappa variable 3/OR22-2|immunoglobulin kappa variable 3/OR22-2 pseudogene" Immunoglobulin kappa (IGK) orphons 352 2000-04-18 2011-04-15 2016-10-05 3527 ENSG00000254264 OTTHUMG00000149995 Z00042 NG_011767 PGOHUM00000246209 IGKV3/OR22-2 +HGNC:5834 IGKV4-1 immunoglobulin kappa variable 4-1 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV41|B3" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2014-11-19 28908 ENSG00000211598 OTTHUMG00000151533 uc061lqi.1 Z00023 NG_000834 P06312 RGD:2320951 IGKV4-1 +HGNC:5835 IGKV5-2 immunoglobulin kappa variable 5-2 other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV52|B2" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2012-02-10 28907 ENSG00000211599 OTTHUMG00000151535 uc061lqj.1 X02485 NG_000834 IGKV5-2 +HGNC:5836 IGKV6-21 immunoglobulin kappa variable 6-21 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV621|A26" immunoglobulin kappa variable 6-21 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-10 2012-02-10 28906 ENSG00000211611 OTTHUMG00000151654 uc061lqv.1 X63399 NG_000834 IGKV6-21 +HGNC:5837 IGKV6D-21 immunoglobulin kappa variable 6D-21 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 "IGKV6D21|A10" immunoglobulin kappa variable 6D-21 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-10 2012-02-10 28870 ENSG00000225523 OTTHUMG00000151608 uc061lrt.1 X12683 NG_000833 IGKV6D-21 +HGNC:5838 IGKV6D-41 immunoglobulin kappa variable 6D-41 (non-functional) other immunoglobulin gene Approved 2p11.2 02p11.2 immunoglobulin kappa variable 6D-41 Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2008-09-10 2012-02-10 28869 ENSG00000211626 OTTHUMG00000151621 uc061lrv.1 X12688 NG_000833 IGKV6D-41 +HGNC:5839 IGKV7-3 immunoglobulin kappa variable 7-3 (pseudogene) pseudogene immunoglobulin pseudogene Approved 2p11.2 02p11.2 "immunoglobulin kappa variable 7-3|immunoglobulin kappa variable 7-3 pseudogene" Immunoglobulin kappa locus at 2p11.2 351 2000-04-18 2011-04-15 2012-02-09 28905 ENSG00000197794 OTTHUMG00000151534 X12682 NG_000834 PGOHUM00000240142 IGKV7-3 +HGNC:5728 IGKV@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-05 +HGNC:5840 IGKVOR2@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-10 +HGNC:5841 IGKVP@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:5853 IGL immunoglobulin lambda locus protein-coding gene gene with protein product Approved 22q11.2 22q11.2 IGL@ Immunoglobulin lambda locus at 22q11.2 353 1991-09-12 2013-03-05 2013-03-05 3535 NG_000002 "3923432|6795508" +HGNC:5855 IGLC1 immunoglobulin lambda constant 1 other immunoglobulin gene Approved 22q11.22 22q11.22 IGLC immunoglobulin lambda constant 1 (Mcg marker) Immunoglobulin lambda locus at 22q11.2 353 2001-06-22 2016-06-13 2016-10-05 3537 ENSG00000211675 OTTHUMG00000151218 uc062cdy.1 J00252 NG_000002 P0CG04 IMGT; the international ImMunoGeneTics information system ®|http://www.imgt.org 147220 IGLC1 +HGNC:5856 IGLC2 immunoglobulin lambda constant 2 other immunoglobulin gene Approved 22q11.22 22q11.22 IGLC immunoglobulin lambda constant 2 (Kern-Oz- marker) Immunoglobulin lambda locus at 22q11.2 353 1989-05-29 2016-06-13 2016-10-05 3538 ENSG00000211677 OTTHUMG00000151214 uc062cea.1 J00253 NG_000002 P0CG05 IGLC2 +HGNC:5857 IGLC3 immunoglobulin lambda constant 3 (Kern-Oz+ marker) other immunoglobulin gene Approved 22q11.22 22q11.22 IGLC Immunoglobulin lambda locus at 22q11.2 353 1989-05-29 2016-10-05 3539 ENSG00000211679 OTTHUMG00000151217 uc062cec.1 J00254 NG_000002 P0CG06 IGLC3 +HGNC:5858 IGLC4 immunoglobulin lambda constant 4 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLC "immunoglobulin lambda constant 4|immunoglobulin lambda constant 4 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 1989-05-29 2011-04-15 2016-10-05 3540 ENSG00000254029 OTTHUMG00000151180 J03009 NG_000002 PGOHUM00000246517 IGLC4 +HGNC:5859 IGLC5 immunoglobulin lambda constant 5 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLC "immunoglobulin lambda constant 5|immunoglobulin lambda constant 5 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 1989-05-29 2011-04-15 2016-10-05 3541 ENSG00000254030 OTTHUMG00000151176 J03010 NG_000002 PGOHUM00000246519 IGLC5 +HGNC:5860 IGLC6 immunoglobulin lambda constant 6 (gene/pseudogene) other immunoglobulin gene Approved 22q11.22 22q11.22 IGLC immunoglobulin lambda constant 6 (Kern+Oz- marker) Immunoglobulin lambda locus at 22q11.2 353 1986-01-01 2016-06-13 2016-10-05 3542 ENSG00000222037 OTTHUMG00000151165 J03011 NG_000002 P0CF74 IGLC6 +HGNC:5861 IGLC7 immunoglobulin lambda constant 7 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28834 ENSG00000211685 OTTHUMG00000151017 uc062ceh.1 X51755 NG_000002 A0M8Q6 IGLC7 +HGNC:5854 IGLC@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-05 +HGNC:15696 IGLCOR22-1 immunoglobulin lambda constant/OR22-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q12.2-q12.3 22q12.2-q12.3 IGLC/OR22-1 "immunoglobulin lambda constant/OR22-1|immunoglobulin lambda constant/OR22-1 pseudogene" Immunoglobulin lambda (IGL) orphons 354 2001-05-15 2011-04-15 2013-12-13 84096 ENSG00000254127 OTTHUMG00000030375 AL008723 PGOHUM00000246569 IGLC/OR22-1 +HGNC:15697 IGLCOR22-2 immunoglobulin lambda constant/OR22-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q12.2-q12.3 22q12.2-q12.3 IGLC/OR22-2 "immunoglobulin lambda constant/OR22-2|immunoglobulin lambda constant/OR22-2 pseudogene" Immunoglobulin lambda (IGL) orphons 354 2001-05-15 2011-04-15 2013-12-13 84086 ENSG00000271093 OTTHUMG00000184769 AL021937 PGOHUM00000246316 IGLC/OR22-2 +HGNC:5863 IGLJ1 immunoglobulin lambda joining 1 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28833 ENSG00000211674 OTTHUMG00000151225 uc062cdx.1 X04457 NG_000002 IGLJ1 +HGNC:5864 IGLJ2 immunoglobulin lambda joining 2 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28832 ENSG00000211676 OTTHUMG00000151243 uc062cdz.1 M15641 NG_000002 IGLJ2 +HGNC:5865 IGLJ3 immunoglobulin lambda joining 3 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28831 ENSG00000211678 OTTHUMG00000151220 uc062ceb.1 M15642 NG_000002 IGLJ3 +HGNC:5866 IGLJ4 immunoglobulin lambda joining 4 (non-functional) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda joining 4 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-15 2016-10-05 28830 ENSG00000211680 OTTHUMG00000151184 uc062ced.1 X51755 NG_000002 IGLJ4 +HGNC:5867 IGLJ5 immunoglobulin lambda joining 5 (non-functional) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda joining 5 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-15 2016-10-05 28829 ENSG00000211681 OTTHUMG00000151170 uc062cee.1 X51755 NG_000002 IGLJ5 +HGNC:5868 IGLJ6 immunoglobulin lambda joining 6 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28828 ENSG00000211682 OTTHUMG00000151181 uc062cef.1 M18338 NG_000002 IGLJ6 +HGNC:5869 IGLJ7 immunoglobulin lambda joining 7 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28827 ENSG00000211684 OTTHUMG00000151167 uc062ceg.1 X51755 NG_000002 IGLJ7 +HGNC:5862 IGLJ@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-05 +HGNC:28614 IGLJCOR18 immunoglobulin lambda joining-constant/OR18 (pseudogene) pseudogene immunoglobulin pseudogene Approved 18p11.31 18p11.31 "IGLJ-COR18|IGLJ-C/OR18" "immunoglobulin lambda joining-constant/OR18|immunoglobulin lambda joining-constant/OR18 pseudogene" Immunoglobulin lambda (IGL) orphons 354 2004-12-15 2011-04-15 2013-12-06 204777 ENSG00000265243 OTTHUMG00000178366 J00255 XM_497569 6801526 PGOHUM00000234973 IGLJ-C/OR18 +HGNC:5870 IGLL1 immunoglobulin lambda like polypeptide 1 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "IGVPB|IGL5|14.1|CD179B" IGLL immunoglobulin lambda-like polypeptide 1 "CD molecules|C1-set domain containing" "471|591" 1991-09-12 2016-01-20 2016-10-12 3543 ENSG00000128322 OTTHUMG00000150673 uc002zxd.4 X52204 NM_020070 "CCDS13809|CCDS13810" P15814 "3139558|2511029" MGI:96529 "IGLL1base: Mutation registry for λ 5 surrogate light-chain deficiency|http://structure.bmc.lu.se/idbase/IGLL1base/|LRG_69|http://www.lrg-sequence.org/LRG/LRG_69" IGLL1 146770 122598 CD179B +HGNC:5871 IGLL2P immunoglobulin lambda like polypeptide 2, pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 "FLAMBDA1|16.2|IGLL1P" IGLL2 "immunoglobulin lambda-like polypeptide 2|immunoglobulin lambda-like polypeptide 2 pseudogene|immunoglobulin lambda-like polypeptide 2, pseudogene" 1993-03-22 2010-10-26 2016-01-20 2016-01-20 3544 L02326 NG_016464 "8406611|3003227" +HGNC:5872 IGLL3P immunoglobulin lambda like polypeptide 3, pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 16.1 IGLL3 "immunoglobulin lambda-like polypeptide 3|immunoglobulin lambda-like polypeptide 3, pseudogene" 1993-03-22 2010-10-26 2016-01-20 2016-01-20 91353 ENSG00000206066 OTTHUMG00000150866 X03529 NR_029395 8406611 IGLL3P +HGNC:38475 IGLL4P immunoglobulin lambda like polypeptide 4, pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 IGLL4 "immunoglobulin lambda-like polypeptide 4 pseudogene|immunoglobulin lambda-like polypeptide 4, pseudogene" 2010-05-07 2010-10-26 2016-01-20 2016-08-22 100287528 ENSG00000276427 OTTHUMG00000188038 X04458 NG_021207 PGOHUM00000297639 +HGNC:38476 IGLL5 immunoglobulin lambda like polypeptide 5 protein-coding gene gene with protein product Approved 22q11.22 22q11.22 immunoglobulin lambda-like polypeptide 5 C1-set domain containing 591 2010-05-07 2016-01-20 2016-01-20 100423062 ENSG00000254709 OTTHUMG00000165670 uc011aiw.3 "M34518|M34515" NM_001178126 CCDS54506 B9A064 MGI:96529 RGD:2321140 IGLL5 +HGNC:34550 IGLON5 IgLON family member 5 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 LOC402665 "V-set domain containing|Immunoglobulin like domain containing|IgLON cell adhesion molecules" "590|594|1052" 2009-01-08 2015-08-10 402665 ENSG00000142549 OTTHUMG00000154422 uc002pwc.3 NM_001101372 CCDS46158 A6NGN9 MGI:2686277 RGD:1305344 IGLON5 +HGNC:5873 IGLP1 immune response to synthetic polypeptides 1 phenotype phenotype only Approved 6p21.3 06p21.3 2000-05-08 2014-11-19 7925 3923830 147080 +HGNC:5874 IGLP2 immune response to synthetic polypeptides 2 phenotype phenotype only Approved 6p21.3 06p21.3 2000-05-08 2014-11-19 7926 3923830 147090 +HGNC:5876 IGLV1-36 immunoglobulin lambda variable 1-36 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28826 ENSG00000211655 OTTHUMG00000151074 uc062cbx.1 Z73653 NG_000002 IGLV1-36 +HGNC:5877 IGLV1-40 immunoglobulin lambda variable 1-40 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28825 ENSG00000211653 OTTHUMG00000151072 uc062cbv.1 M94116 NG_000002 IGLV1-40 +HGNC:5878 IGLV1-41 immunoglobulin lambda variable 1-41 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 1-41|immunoglobulin lambda variable 1-41 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28824 ENSG00000253818 OTTHUMG00000151056 M94118 NG_000002 PGOHUM00000246468 IGLV1-41 +HGNC:5879 IGLV1-44 immunoglobulin lambda variable 1-44 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28823 ENSG00000211651 OTTHUMG00000151050 uc062cbt.1 Z73654 NG_000002 IGLV1-44 +HGNC:5880 IGLV1-47 immunoglobulin lambda variable 1-47 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28822 ENSG00000211648 OTTHUMG00000151048 uc062cbq.1 Z73663 NG_000002 IGLV1-47 +HGNC:5881 IGLV1-50 immunoglobulin lambda variable 1-50 (non-functional) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 1-50 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-15 2016-10-05 28821 ENSG00000211645 OTTHUMG00000151051 uc062cbn.1 M94112 NG_000002 IGLV1-50 +HGNC:5882 IGLV1-51 immunoglobulin lambda variable 1-51 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28820 ENSG00000211644 OTTHUMG00000151035 uc062cbm.1 Z73661 NG_000002 P01701 IGLV1-51 +HGNC:5883 IGLV1-62 immunoglobulin lambda variable 1-62 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 1-62|immunoglobulin lambda variable 1-62 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28819 ENSG00000253823 OTTHUMG00000150848 D87022 NG_000002 PGOHUM00000246438 IGLV1-62 +HGNC:5894 IGLV2-5 immunoglobulin lambda variable 2-5 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 2-5|immunoglobulin lambda variable 2-5 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28818 ENSG00000253234 OTTHUMG00000151216 Z73641 NG_000002 PGOHUM00000246513 IGLV2-5 +HGNC:5895 IGLV2-8 immunoglobulin lambda variable 2-8 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2015-02-02 28817 ENSG00000278196 OTTHUMG00000151240 uc021wmp.2 X97462 NG_000002 IGLV2-8 +HGNC:5887 IGLV2-11 immunoglobulin lambda variable 2-11 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28816 ENSG00000211668 OTTHUMG00000151236 uc062cdg.1 Z73657 NG_000002 IGLV2-11 +HGNC:5888 IGLV2-14 immunoglobulin lambda variable 2-14 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28815 ENSG00000211666 OTTHUMG00000151235 uc062cdd.1 Z73664 NG_000002 IGLV2-14 +HGNC:5889 IGLV2-18 immunoglobulin lambda variable 2-18 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28814 ENSG00000211664 OTTHUMG00000151232 uc062ccz.1 Z73642 NG_000002 IGLV2-18 +HGNC:5890 IGLV2-23 immunoglobulin lambda variable 2-23 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28813 ENSG00000211660 OTTHUMG00000151234 uc062cct.1 X14616 NG_000002 IGLV2-23 +HGNC:5891 IGLV2-28 immunoglobulin lambda variable 2-28 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 2-28|immunoglobulin lambda variable 2-28 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28812 ENSG00000253451 OTTHUMG00000151183 X97466 NG_000002 PGOHUM00000246485 IGLV2-28 +HGNC:5892 IGLV2-33 immunoglobulin lambda variable 2-33 (non-functional) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 2-33 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-15 2016-10-05 28811 ENSG00000211656 OTTHUMG00000151178 uc062ccj.1 Z73643 NG_000002 IGLV2-33 +HGNC:5893 IGLV2-34 immunoglobulin lambda variable 2-34 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 2-34|immunoglobulin lambda variable 2-34 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28810 ENSG00000253120 OTTHUMG00000151174 D87013 NG_000002 PGOHUM00000246477 IGLV2-34 +HGNC:5896 IGLV3-1 immunoglobulin lambda variable 3-1 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28809 ENSG00000211673 OTTHUMG00000151224 uc062cdo.1 X57826 NG_000002 IGLV3-1 +HGNC:5904 IGLV3-2 immunoglobulin lambda variable 3-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-2|immunoglobulin lambda variable 3-2 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28808 ENSG00000253963 OTTHUMG00000151212 X97468 NG_000002 IGLV3-2 +HGNC:5915 IGLV3-4 immunoglobulin lambda variable 3-4 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-4|immunoglobulin lambda variable 3-4 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28807 ENSG00000226420 OTTHUMG00000151238 D87024 NG_000002 PGOHUM00000246514 IGLV3-4 +HGNC:5916 IGLV3-6 immunoglobulin lambda variable 3-6 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-6|immunoglobulin lambda variable 3-6 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28806 ENSG00000253448 OTTHUMG00000151222 X97465 NG_000002 PGOHUM00000246512 IGLV3-6 +HGNC:5917 IGLV3-7 immunoglobulin lambda variable 3-7 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-7|immunoglobulin lambda variable 3-7 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28805 ENSG00000254077 OTTHUMG00000151208 X97470 NG_000002 PGOHUM00000246511 IGLV3-7 +HGNC:5918 IGLV3-9 immunoglobulin lambda variable 3-9 (gene/pseudogene) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 3-9 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-12 2016-10-05 28804 ENSG00000211670 OTTHUMG00000151239 uc062cdi.1 X97473 NG_000002 IGLV3-9 +HGNC:5897 IGLV3-10 immunoglobulin lambda variable 3-10 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28803 ENSG00000211669 OTTHUMG00000151237 uc062cdh.1 X97464 NG_000002 IGLV3-10 +HGNC:5898 IGLV3-12 immunoglobulin lambda variable 3-12 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28802 ENSG00000211667 OTTHUMG00000151233 uc062cde.1 Z73658 NG_000002 IGLV3-12 +HGNC:5899 IGLV3-13 immunoglobulin lambda variable 3-13 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-13|immunoglobulin lambda variable 3-13 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28801 ENSG00000253590 OTTHUMG00000151215 X97463 NG_000002 IGLV3-13 +HGNC:5900 IGLV3-15 immunoglobulin lambda variable 3-15 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-15|immunoglobulin lambda variable 3-15 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28800 ENSG00000253786 OTTHUMG00000151210 D87015 NG_000002 PGOHUM00000246499 IGLV3-15 +HGNC:5901 IGLV3-16 immunoglobulin lambda variable 3-16 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28799 ENSG00000211665 OTTHUMG00000151231 uc062cdb.1 X97471 NG_000002 IGLV3-16 +HGNC:5902 IGLV3-17 immunoglobulin lambda variable 3-17 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-17|immunoglobulin lambda variable 3-17 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28798 ENSG00000253152 OTTHUMG00000151227 X97472 NG_000002 PGOHUM00000246496 IGLV3-17 +HGNC:5903 IGLV3-19 immunoglobulin lambda variable 3-19 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28797 ENSG00000211663 OTTHUMG00000151226 uc062ccx.1 X56178 NG_000002 IGLV3-19 +HGNC:5905 IGLV3-21 immunoglobulin lambda variable 3-21 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28796 ENSG00000211662 OTTHUMG00000151213 uc062ccw.1 X71966 NG_000002 IGLV3-21 +HGNC:5906 IGLV3-22 immunoglobulin lambda variable 3-22 (gene/pseudogene) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 3-22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-12 2016-10-05 28795 ENSG00000211661 OTTHUMG00000151229 uc062ccv.1 Z73666 NG_000002 IGLV3-22 +HGNC:5907 IGLV3-24 immunoglobulin lambda variable 3-24 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-24|immunoglobulin lambda variable 3-24 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28794 ENSG00000253822 OTTHUMG00000151230 X71968 NG_000002 PGOHUM00000246490 IGLV3-24 +HGNC:5908 IGLV3-25 immunoglobulin lambda variable 3-25 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28793 ENSG00000211659 OTTHUMG00000151221 uc062ccr.1 X97474 NG_000002 IGLV3-25 +HGNC:5909 IGLV3-26 immunoglobulin lambda variable 3-26 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-26|immunoglobulin lambda variable 3-26 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28792 ENSG00000253913 OTTHUMG00000151211 X97467 NG_000002 PGOHUM00000246487 IGLV3-26 +HGNC:5910 IGLV3-27 immunoglobulin lambda variable 3-27 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28791 ENSG00000211658 OTTHUMG00000151171 uc062ccq.1 D86994 NG_000002 IGLV3-27 +HGNC:5911 IGLV3-29 immunoglobulin lambda variable 3-29 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 3-29 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-15 2016-10-05 28790 ENSG00000253338 OTTHUMG00000151168 Z73644 NG_000002 PGOHUM00000246484 IGLV3-29 +HGNC:5912 IGLV3-30 immunoglobulin lambda variable 3-30 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-30|immunoglobulin lambda variable 3-30 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28789 ENSG00000253329 OTTHUMG00000151182 Z73646 NG_000002 PGOHUM00000246481 IGLV3-30 +HGNC:5913 IGLV3-31 immunoglobulin lambda variable 3-31 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 3-31|immunoglobulin lambda variable 3-31 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28788 ENSG00000253920 OTTHUMG00000151179 X97469 NG_000002 PGOHUM00000246480 IGLV3-31 +HGNC:5914 IGLV3-32 immunoglobulin lambda variable 3-32 (non-functional) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 3-32 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-15 2016-10-05 28787 ENSG00000211657 OTTHUMG00000151166 uc062cck.1 Z73645 NG_000002 IGLV3-32 +HGNC:5919 IGLV4-3 immunoglobulin lambda variable 4-3 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28786 ENSG00000211672 OTTHUMG00000151244 uc062cdn.1 X57828 NG_000002 IGLV4-3 +HGNC:5920 IGLV4-60 immunoglobulin lambda variable 4-60 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28785 ENSG00000211639 OTTHUMG00000150851 uc062cbd.1 Z73667 NG_000002 IGLV4-60 +HGNC:5921 IGLV4-69 immunoglobulin lambda variable 4-69 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28784 ENSG00000211637 OTTHUMG00000150857 uc062cba.1 Z73648 NG_000002 IGLV4-69 +HGNC:5922 IGLV5-37 immunoglobulin lambda variable 5-37 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28783 ENSG00000211654 OTTHUMG00000151069 uc062cbw.1 Z73672 NG_000002 IGLV5-37 +HGNC:5923 IGLV5-39 immunoglobulin lambda variable 5-39 other immunoglobulin gene Approved 22q11.2 alternate reference locus 22q11.2 alternate reference locus Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2015-02-27 28782 "Z73668|KI270875" IGLV5-39 +HGNC:5924 IGLV5-45 immunoglobulin lambda variable 5-45 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28781 ENSG00000211650 OTTHUMG00000151054 uc062cbs.1 Z73670 NG_000002 IGLV5-45 +HGNC:5925 IGLV5-48 immunoglobulin lambda variable 5-48 (non-functional) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 5-48 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-15 2016-10-05 28780 ENSG00000211647 OTTHUMG00000151041 uc062cbp.1 Z73649 NG_000002 IGLV5-48 +HGNC:5926 IGLV5-52 immunoglobulin lambda variable 5-52 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28779 ENSG00000211643 OTTHUMG00000151049 uc062cbl.1 Z73669 NG_000002 IGLV5-52 +HGNC:5927 IGLV6-57 immunoglobulin lambda variable 6-57 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28778 ENSG00000211640 OTTHUMG00000150996 uc062cbe.1 Z73673 NG_000002 RGD:6484476 IGLV6-57 +HGNC:5928 IGLV7-35 immunoglobulin lambda variable 7-35 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 7-35|immunoglobulin lambda variable 7-35 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28777 ENSG00000253631 OTTHUMG00000151067 Z73660 NG_000002 PGOHUM00000246474 IGLV7-35 +HGNC:5929 IGLV7-43 immunoglobulin lambda variable 7-43 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28776 ENSG00000211652 OTTHUMG00000151053 uc062cbu.1 X14614 NG_000002 IGLV7-43 +HGNC:5930 IGLV7-46 immunoglobulin lambda variable 7-46 (gene/pseudogene) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 7-46 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-12 2016-10-05 28775 ENSG00000211649 OTTHUMG00000151040 uc062cbr.1 Z73674 NG_000002 IGLV7-46 +HGNC:5931 IGLV8-61 immunoglobulin lambda variable 8-61 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28774 ENSG00000211638 OTTHUMG00000150844 uc062cbc.1 Z73650 NG_000002 IGLV8-61 +HGNC:5932 IGLV8OR8-1 immunoglobulin lambda variable 8/OR8-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 8q11.21 08q11.21 IGLV8/OR8-1 "immunoglobulin lambda variable 8/OR8-1|immunoglobulin lambda variable 8/OR8-1 pseudogene" Immunoglobulin lambda (IGL) orphons 354 2000-05-08 2011-04-15 2016-10-11 100996586 ENSG00000215177 OTTHUMG00000164149 Y08831 PGOHUM00000263883 IGLV8/OR8-1 +HGNC:5933 IGLV9-49 immunoglobulin lambda variable 9-49 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28773 ENSG00000223350 OTTHUMG00000151045 uc062cbo.1 Z73675 NG_000002 IGLV9-49 +HGNC:5884 IGLV10-54 immunoglobulin lambda variable 10-54 other immunoglobulin gene Approved 22q11.22 22q11.22 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2016-10-05 28772 ENSG00000211642 OTTHUMG00000150993 uc032qho.2 Z73676 NG_000002 IGLV10-54 +HGNC:5885 IGLV10-67 immunoglobulin lambda variable 10-67 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 "immunoglobulin lambda variable 10-67|immunoglobulin lambda variable 10-67 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28771 ENSG00000253794 OTTHUMG00000150849 Z73651 NG_000002 PGOHUM00000246432 IGLV10-67 +HGNC:5886 IGLV11-55 immunoglobulin lambda variable 11-55 (non-functional) other immunoglobulin gene Approved 22q11.22 22q11.22 immunoglobulin lambda variable 11-55 Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2008-09-15 2016-10-05 28770 ENSG00000211641 OTTHUMG00000150995 uc062cbf.1 D86996 NG_000002 IGLV11-55 +HGNC:5875 IGLV@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-03-05 +HGNC:5934 IGLVI-20 immunoglobulin lambda variable (I)-20 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(I)-20 "immunoglobulin lambda variable (I)-20|immunoglobulin lambda variable (I)-20 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28769 ENSG00000254240 OTTHUMG00000151242 D87007 NG_000002 PGOHUM00000246493 IGLV(I)-20 +HGNC:5935 IGLVI-38 immunoglobulin lambda variable (I)-38 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(I)-38 "immunoglobulin lambda variable (I)-38|immunoglobulin lambda variable (I)-38 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28768 ENSG00000253889 OTTHUMG00000151073 D87009 NG_000002 IGLV(I)-38 +HGNC:5936 IGLVI-42 immunoglobulin lambda variable (I)-42 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(I)-42 "immunoglobulin lambda variable (I)-42|immunoglobulin lambda variable (I)-42 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28767 ENSG00000254175 OTTHUMG00000151043 X14613 NG_000002 PGOHUM00000246466 IGLV(I)-42 +HGNC:5937 IGLVI-56 immunoglobulin lambda variable (I)-56 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(I)-56 "immunoglobulin lambda variable (I)-56|immunoglobulin lambda variable (I)-56 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28766 ENSG00000253126 OTTHUMG00000151583 D86996 NG_000002 PGOHUM00000246449 IGLV(I)-56 +HGNC:5938 IGLVI-63 immunoglobulin lambda variable (I)-63 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(I)-63 "immunoglobulin lambda variable (I)-63|immunoglobulin lambda variable (I)-63 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28765 ENSG00000253752 OTTHUMG00000150855 D87022 NG_000002 PGOHUM00000246437 IGLV(I)-63 +HGNC:5939 IGLVI-68 immunoglobulin lambda variable (I)-68 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(I)-68 "immunoglobulin lambda variable (I)-68|immunoglobulin lambda variable (I)-68 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28764 ENSG00000254355 OTTHUMG00000150853 D86993 NG_000002 PGOHUM00000246430 IGLV(I)-68 +HGNC:5940 IGLVI-70 immunoglobulin lambda variable (I)-70 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(I)-70 "immunoglobulin lambda variable (I)-70|immunoglobulin lambda variable (I)-70 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28763 ENSG00000253239 OTTHUMG00000150834 D86993 NG_000002 PGOHUM00000246428 IGLV(I)-70 +HGNC:5941 IGLVIV-53 immunoglobulin lambda variable (IV)-53 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(IV)-53 "immunoglobulin lambda variable (IV)-53|immunoglobulin lambda variable (IV)-53 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28762 ENSG00000253935 OTTHUMG00000151585 D86996 NG_000002 IGLV(IV)-53 +HGNC:5942 IGLVIV-59 immunoglobulin lambda variable (IV)-59 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(IV)-59 "immunoglobulin lambda variable (IV)-59|immunoglobulin lambda variable (IV)-59 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28761 ENSG00000254308 OTTHUMG00000150847 D87000 NG_000002 PGOHUM00000246445 IGLV(IV)-59 +HGNC:5943 IGLVIV-64 immunoglobulin lambda variable (IV)-64 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(IV)-64 "immunoglobulin lambda variable (IV)-64|immunoglobulin lambda variable (IV)-64 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28760 ENSG00000253242 OTTHUMG00000150852 D87022 NG_000002 PGOHUM00000246436 IGLV(IV)-64 +HGNC:5944 IGLVIV-65 immunoglobulin lambda variable (IV)-65 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(IV)-65 "immunoglobulin lambda variable (IV)-65|immunoglobulin lambda variable (IV)-65 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28759 ENSG00000254161 OTTHUMG00000150861 D87022 NG_000002 PGOHUM00000246435 IGLV(IV)-65 +HGNC:15692 IGLVIV-66-1 immunoglobulin lambda variable (IV)-66-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(IV)-66-1 "immunoglobulin lambda variable (IV)-66-1|immunoglobulin lambda variable (IV)-66-1 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2001-05-15 2011-04-15 2016-10-05 84097 ENSG00000253874 OTTHUMG00000150862 D87004 NG_000002 PGOHUM00000246433 IGLV(IV)-66-1 +HGNC:15694 IGLVIVOR22-1 immunoglobulin lambda variable (IV)/OR22-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.2-q12.1 22q11.2-q12.1 IGLV(IV)/OR22-1 "immunoglobulin lambda variable (IV)/OR22-1|immunoglobulin lambda variable (IV)/OR22-1 pseudogene" Immunoglobulin lambda (IGL) orphons 354 2001-05-15 2011-04-15 2013-12-13 84088 ENSG00000271138 OTTHUMG00000184784 AL008721 PGOHUM00000246297 IGLV(IV)/OR22-1 +HGNC:15695 IGLVIVOR22-2 immunoglobulin lambda variable (IV)/OR22-2 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q12.2-q12.3 22q12.2-q12.3 IGLV(IV)/OR22-2 "immunoglobulin lambda variable (IV)/OR22-2|immunoglobulin lambda variable (IV)/OR22-2 pseudogene" Immunoglobulin lambda (IGL) orphons 354 2001-05-15 2011-04-15 2013-12-13 84087 ENSG00000243519 OTTHUMG00000099456 AL021937 PGOHUM00000246573 IGLV(IV)/OR22-2 +HGNC:5945 IGLVV-58 immunoglobulin lambda variable (V)-58 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(V)-58 "immunoglobulin lambda variable (V)-58|immunoglobulin lambda variable (V)-58 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28758 ENSG00000253637 OTTHUMG00000150893 D87000 NG_000002 PGOHUM00000246446 IGLV(V)-58 +HGNC:5946 IGLVV-66 immunoglobulin lambda variable (V)-66 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(V)-66 "immunoglobulin lambda variable (V)-66|immunoglobulin lambda variable (V)-66 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2000-05-08 2011-04-15 2016-10-05 28757 ENSG00000254075 OTTHUMG00000151584 D87004 NG_000002 PGOHUM00000246434 IGLV(V)-66 +HGNC:15689 IGLVVI-22-1 immunoglobulin lambda variable (VI)-22-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(VI)-22-1 "immunoglobulin lambda variable (VI)-22-1|immunoglobulin lambda variable (VI)-22-1 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2001-05-15 2011-04-15 2016-10-05 84091 ENSG00000253546 OTTHUMG00000151219 X71351 NG_000002 IGLV(VI)-22-1 +HGNC:15690 IGLVVI-25-1 immunoglobulin lambda variable (VI)-25-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(VI)-25-1 "immunoglobulin lambda variable (VI)-25-1|immunoglobulin lambda variable (VI)-25-1 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2001-05-15 2011-04-15 2016-10-05 84090 ENSG00000253779 OTTHUMG00000151586 D86994 NG_000002 IGLV(VI)-25-1 +HGNC:15691 IGLVVII-41-1 immunoglobulin lambda variable (VII)-41-1 (pseudogene) pseudogene immunoglobulin pseudogene Approved 22q11.22 22q11.22 IGLV(VII)-41-1 "immunoglobulin lambda variable (VII)-41-1|immunoglobulin lambda variable (VII)-41-1 pseudogene" Immunoglobulin lambda locus at 22q11.2 353 2001-05-15 2011-04-15 2016-10-05 84089 ENSG00000254073 OTTHUMG00000151296 X99568 NG_000002 PGOHUM00000246467 IGLV(VII)-41-1 +HGNC:5947 IGO1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:5948 IGSF1 immunoglobulin superfamily member 1 protein-coding gene gene with protein product Approved Xq25 Xq25 "KIAA0364|IGDC1|IGCD1|INHBP|MGC75490|PGSF2" immunoglobulin superfamily, member 1 Immunoglobulin like domain containing 594 1997-10-27 2015-11-18 2016-10-12 3547 ENSG00000147255 OTTHUMG00000022406 uc004ewd.5 AF034198 NM_001555 "CCDS14629|CCDS14630|CCDS55490|CCDS55491" Q8N6C5 "9521868|9729118" MGI:2147913 RGD:631402 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IGSF1|LRG_840|http://www.lrg-sequence.org/LRG/LRG_840" IGSF1 300137 330232 I43.951 +HGNC:5950 IGSF3 immunoglobulin superfamily member 3 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 "V8|EWI-3|MGC117164" immunoglobulin superfamily, member 3 "V-set domain containing|Immunoglobulin like domain containing" "590|594" 1998-08-13 2015-11-18 2016-10-05 3321 ENSG00000143061 OTTHUMG00000022751 uc057jsm.1 AF031174 NM_001542 "CCDS30813|CCDS30814" O75054 9790749 MGI:1926158 RGD:1307796 IGSF3 603491 419348 +HGNC:5952 IGSF5 immunoglobulin superfamily member 5 protein-coding gene gene with protein product Approved 21q22.2 21q22.2 JAM4 junctional adhesion molecule 4 immunoglobulin superfamily, member 5 "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2000-05-23 2015-11-18 2015-11-18 150084 ENSG00000183067 OTTHUMG00000086724 uc002yyo.3 NM_001080444 CCDS33562 Q9NSI5 MGI:1919308 RGD:1359642 IGSF5 610638 +HGNC:5953 IGSF6 immunoglobulin superfamily member 6 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 DORA immunoglobulin superfamily, member 6 V-set domain containing 590 2000-06-05 2015-11-18 2015-11-18 10261 ENSG00000140749 OTTHUMG00000090709 uc002djg.3 AJ223183 NM_005849 CCDS10599 O95976 9809579 MGI:1891393 RGD:620663 IGSF6 606222 +HGNC:17813 IGSF8 immunoglobulin superfamily member 8 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "CD81P3|EWI2|PGRL|CD316" immunoglobulin superfamily, member 8 "CD molecules|V-set domain containing" "471|590" 2002-01-08 2015-11-18 2016-10-05 93185 ENSG00000162729 OTTHUMG00000024075 uc009wtf.4 AF407274 NM_052868 CCDS1195 Q969P0 "11504738|11673522" MGI:2154090 RGD:1311500 IGSF8 606644 CD316 +HGNC:18132 IGSF9 immunoglobulin superfamily member 9 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "KIAA1355|Nrt1|IGSF9A" immunoglobulin superfamily, member 9 "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2002-05-29 2015-11-18 2016-10-05 57549 ENSG00000085552 OTTHUMG00000022794 uc001fur.2 AB037776 NM_020789 "CCDS1190|CCDS44254" Q9P2J2 11991715 MGI:2135283 RGD:1304566 IGSF9 609738 +HGNC:32326 IGSF9B immunoglobulin superfamily member 9B protein-coding gene gene with protein product Approved 11q25 11q25 KIAA1030 immunoglobulin superfamily, member 9B "Fibronectin type III domain containing|V-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|590|593|594" 2005-10-12 2005-11-20 2015-11-18 2015-11-18 22997 ENSG00000080854 OTTHUMG00000167124 uc031qfh.2 AK097578 XM_290502 CCDS61010 Q9UPX0 MGI:2685354 RGD:1564717 IGSF9B 613773 +HGNC:26384 IGSF10 immunoglobulin superfamily member 10 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "FLJ25972|CMF608" immunoglobulin superfamily, member 10 I-set domain containing 593 2004-03-04 2015-11-18 2015-11-18 285313 ENSG00000152580 OTTHUMG00000159856 uc011bod.3 AY273815 NM_178822 CCDS3160 Q6WRI0 12477932 MGI:1923481 RGD:735030 IGSF10 +HGNC:16669 IGSF11 immunoglobulin superfamily member 11 protein-coding gene gene with protein product Approved 3q13.32 03q13.32 "BT-IgSF|MGC35227|Igsf13|VSIG3|CT119" cancer/testis antigen 119 immunoglobulin superfamily, member 11 I-set domain containing 593 2002-12-04 2015-11-18 2016-10-05 152404 ENSG00000144847 OTTHUMG00000159387 uc010hqs.5 AB079879 XM_011512462 "CCDS2983|CCDS46891" Q5DX21 12207903 MGI:2388477 RGD:1308758 IGSF11 608351 +HGNC:40777 IGSF11-AS1 IGSF11 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.32 03q13.32 IGSF11 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100506765 ENSG00000239877 OTTHUMG00000159386 uc003eca.5 NR_046230 +HGNC:28246 IGSF21 immunoglobin superfamily member 21 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "MGC15730|RP11-121A23.1" immunoglobin superfamily, member 21 "V-set domain containing|Immunoglobulin like domain containing" "590|594" 2005-07-21 2015-11-18 2015-11-18 84966 ENSG00000117154 OTTHUMG00000002432 uc001bau.3 AK075316 NM_032880 CCDS184 Q96ID5 12477932 MGI:2681842 RGD:1310117 IGSF21 +HGNC:26750 IGSF22 immunoglobulin superfamily member 22 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "FLJ37794|IGFN2" immunoglobulin superfamily, member 22 "Fibronectin type III domain containing|I-set domain containing" "555|593" 2005-10-28 2015-11-18 2016-04-25 283284 ENSG00000179057 OTTHUMG00000160502 uc009yht.3 AK095113 NM_173588 CCDS41625 Q8N9C0 RGD:11452860 IGSF22 +HGNC:40040 IGSF23 immunoglobulin superfamily member 23 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 immunoglobulin superfamily, member 23 Immunoglobulin like domain containing 594 2011-05-06 2015-11-18 2015-11-18 147710 ENSG00000216588 OTTHUMG00000151531 uc021uvj.1 NM_001205280 CCDS54277 A1L1A6 MGI:1917330 RGD:1564357 IGSF23 +HGNC:5954 IHG1 iris hypoplasia with glaucoma 1 phenotype phenotype only Approved X X IHG 2001-06-22 2012-10-02 3548 308500 +HGNC:5956 IHH indian hedgehog protein-coding gene gene with protein product Approved 2q35 02q35 "HHG2|BDA1" "Indian hedgehog (Drosophila) homolog|Indian hedgehog homolog (Drosophila)" 1995-03-21 2013-02-15 2016-10-05 3549 ENSG00000163501 OTTHUMG00000154631 uc002vjo.3 L38517 NM_002181 CCDS33380 Q14623 "7590746|14770182" MGI:96533 RGD:620021 IHH 600726 122605 C46.003 +HGNC:5958 IK IK cytokine, down-regulator of HLA II protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "RED|RER" 1996-06-12 2016-05-19 3550 ENSG00000113141 OTTHUMG00000163374 uc003lgq.4 BC051295 NM_006083 CCDS47280 Q13123 7970704 MGI:1345142 RGD:1359352 IK 600549 +HGNC:26430 IKBIP IKBKB interacting protein protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "FLJ31051|IKIP" I kappa B kinase interacting protein 2009-10-05 2014-11-19 121457 ENSG00000166130 OTTHUMG00000170213 uc001tfx.5 AJ539425 NM_153687 "CCDS9067|CCDS9068|CCDS41822" Q70UQ0 15389287 MGI:1914704 RGD:1305457 IKBIP 609861 +HGNC:5959 IKBKAP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "IKAP|TOT1|ELP1|IKI3" elongator acetyltransferase complex subunit 1 DYS dysautonomia (Riley-Day syndrome, hereditary sensory autonomic neuropathy type III) Elongator acetyltransferase complex 539 1998-09-30 2003-12-02 2016-10-12 8518 ENSG00000070061 OTTHUMG00000020465 uc004bdm.5 AF044195 XM_017015238 "CCDS6773|CCDS83394" O95163 "9751059|11179008" MGI:1914544 RGD:620072 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_251|http://www.lrg-sequence.org/LRG/LRG_251" IKBKAP 603722 122607 +HGNC:31413 IKBKAP-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-02-15 +HGNC:5960 IKBKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "IKK2|NFKBIKB|IKK-beta|IKKB" 1998-02-11 2016-10-05 3551 ENSG00000104365 OTTHUMG00000164092 uc003xow.3 AF029684 XM_005273490 "CCDS6128|CCDS55228|CCDS56535" O14920 "9878263|9763654" MGI:1338071 RGD:621375 IKBKB 603258 401771 objectId:2039 +HGNC:14552 IKBKE inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "IKKE|IKK-i|KIAA0151" 2002-12-02 2015-08-26 9641 ENSG00000263528 OTTHUMG00000184613 uc001hdz.3 AB016590 XM_017002868 "CCDS30996|CCDS53464|CCDS73019" Q14164 "10421793|10882136" MGI:1929612 RGD:1308352 IKBKE 605048 objectId:2040 +HGNC:5961 IKBKG inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma protein-coding gene gene with protein product Approved Xq28 Xq28 "IKK-gamma|NEMO|Fip3p|FIP-3|FIP3|ZC2HC9" "IP2|IP1" incontinentia pigmenti Zinc fingers C2HC-type 66 1998-09-30 2016-10-12 8517 ENSG00000269335 OTTHUMG00000024234 uc033fbv.2 AF074382 NM_003639 "CCDS14757|CCDS48196|CCDS48197|CCDS83513" Q9Y6K9 "9751060|10087442|11590134" MGI:1338074 RGD:735223 "IKBKGbase: Mutation registry for Nemo deficiency|http://structure.bmc.lu.se/idbase/IKBKGbase/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IKBKG|LRG_70|http://www.lrg-sequence.org/LRG/LRG_70" IKBKG 300248 122614 +HGNC:24455 IKBKGP1 inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma pseudogene 1 pseudogene pseudogene Approved Xq28 Xq28 deltaNEMO Delta NEMO IKBKGP inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma pseudogene 2007-07-23 2010-04-14 2010-04-14 2015-02-02 246210 ENSG00000275882 OTTHUMG00000188230 NG_001576 11709543 +HGNC:13176 IKZF1 IKAROS family zinc finger 1 protein-coding gene gene with protein product Approved 7p12.2 07p12.2 "hIk-1|LyF-1|Hs.54452|IKAROS|PPP1R92" protein phosphatase 1, regulatory subunit 92 ZNFN1A1 "zinc finger protein, subfamily 1A, 1 (Ikaros)|IKAROS family zinc finger 1 (Ikaros)" "Zinc fingers C2H2-type|Protein phosphatase 1 regulatory subunits" "28|694" 1999-08-23 2006-08-25 2015-11-12 2015-11-12 10320 ENSG00000185811 OTTHUMG00000155907 uc003tow.5 U40462 NM_006060 "CCDS59055|CCDS69299|CCDS75596|CCDS75597|CCDS78232|CCDS78233" Q13422 "1439790|7935426" MGI:1342540 RGD:1562979 IKZF1 603023 318745 +HGNC:13177 IKZF2 IKAROS family zinc finger 2 protein-coding gene gene with protein product Approved 2q34 02q34 Helios ZNFN1A2 "zinc finger protein, subfamily 1A, 2 (Helios)|IKAROS family zinc finger 2 (Helios)" Zinc fingers C2H2-type 28 1999-08-23 2006-08-25 2015-11-12 2016-10-05 22807 ENSG00000030419 OTTHUMG00000133005 uc061sai.1 AF130863 NM_016260 "CCDS2395|CCDS46507" Q9UKS7 "9512513|9560339" MGI:1342541 RGD:1308686 IKZF2 606234 +HGNC:13178 IKZF3 IKAROS family zinc finger 3 protein-coding gene gene with protein product Approved 17q12-q21.1 17q12-q21.1 Aiolos ZNFN1A3 "zinc finger protein, subfamily 1A, 3 (Aiolos)|IKAROS family zinc finger 3 (Aiolos)" Zinc fingers C2H2-type 28 1999-08-23 2006-08-25 2015-11-12 2016-10-11 22806 ENSG00000161405 OTTHUMG00000133250 uc002hsu.4 AF129512 NM_012481 "CCDS11346|CCDS11347|CCDS11348|CCDS11349|CCDS11350|CCDS11351|CCDS58539|CCDS58540|CCDS58541|CCDS58542|CCDS58543|CCDS58544|CCDS58545|CCDS74055" Q9UKT9 "9155026|10552935" MGI:1342542 RGD:1307024 IKZF3 606221 451586 +HGNC:13179 IKZF4 IKAROS family zinc finger 4 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 Eos ZNFN1A4 "zinc finger protein, subfamily 1A, 4 (Eos)|IKAROS family zinc finger 4 (Eos)" Zinc fingers C2H2-type 28 1999-08-23 2006-08-25 2015-11-12 2016-10-11 64375 ENSG00000123411 OTTHUMG00000170132 uc058pgc.1 AF230809 NM_022465 CCDS44917 Q9H2S9 10978333 MGI:1343139 RGD:2319157 IKZF4 606239 +HGNC:14283 IKZF5 IKAROS family zinc finger 5 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "Pegasus|FLJ22973" ZNFN1A5 "zinc finger protein, subfamily 1A, 5|zinc finger protein, subfamily 1A, 5 (Pegasus)|IKAROS family zinc finger 5 (Pegasus)" Zinc fingers C2H2-type 28 2004-02-20 2006-08-25 2015-11-12 2016-10-05 64376 ENSG00000095574 OTTHUMG00000019192 uc001lha.4 AF230808 NM_022466 CCDS41574 Q9H5V7 10978333 MGI:1914393 RGD:1310965 IKZF5 606238 +HGNC:5991 IL1A interleukin 1 alpha protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "IL1F1|IL-1A|IL1-ALPHA" "preinterleukin 1 alpha|hematopoietin-1|pro-interleukin-1-alpha" IL1 "Endogenous ligands|Interleukins" "542|601" 2001-06-22 2015-11-12 2016-10-05 3552 ENSG00000115008 OTTHUMG00000131315 uc002tig.4 M28983 NM_000575 CCDS2101 P01583 "8188271|2989698" MGI:96542 RGD:2890 IL1A 147760 +HGNC:5992 IL1B interleukin 1 beta protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "IL1F2|IL-1B|IL1-BETA" "Endogenous ligands|Interleukins" "542|601" 1989-03-31 2015-11-12 2016-10-05 3553 ENSG00000125538 OTTHUMG00000131344 uc002tii.2 M15330 NM_000576 CCDS2102 P01584 "2954882|2989698" MGI:96543 RGD:2891 IL1B 147720 objectId:2623 +HGNC:15552 IL1F10 interleukin 1 family member 10 (theta) protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "FKSG75|IL-1HY2|IL-1F10|IL1-theta|MGC11983|MGC119832|MGC119833" "FIL1- theta|interleukin-1 receptor antagonist FKSG75" interleukin 1 family, member 10 (theta) Interleukins 601 2002-08-02 2015-11-18 2016-10-05 84639 ENSG00000136697 OTTHUMG00000131339 uc002tiu.4 AY026753 NM_173161 CCDS2112 Q8WWZ1 "11747621|11991723|11991722" MGI:2652548 RGD:1305635 IL1F10 615296 +HGNC:5993 IL1R1 interleukin 1 receptor type 1 protein-coding gene gene with protein product Approved 2q11.2-q12.1 02q11.2-q12.1 "D2S1473|CD121A" interleukin-1 receptor, type I "IL1R|IL1RA" interleukin 1 receptor, type I "CD molecules|I-set domain containing|Immunoglobulin like domain containing|Interleukin receptors|TIR domain containing" "471|593|594|602|1296" 1990-06-27 2016-03-01 2016-10-11 3554 ENSG00000115594 OTTHUMG00000130783 uc061mlt.1 M27492 NM_001320978 "CCDS2055|CCDS74547" P14778 "1833184|10191101" MGI:96545 RGD:2892 IL1R1 147810 objectId:1734 CD121A +HGNC:5994 IL1R2 interleukin 1 receptor type 2 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 CD121b IL1RB interleukin 1 receptor, type II "CD molecules|Immunoglobulin like domain containing|Interleukin receptors" "471|594|602" 1992-11-30 2016-03-01 2016-10-05 7850 ENSG00000115590 OTTHUMG00000130695 uc002tbm.4 X59770 NM_004633 "CCDS2054|CCDS58719" P27930 "10191101|1833184" MGI:96546 RGD:621147 IL1R2 147811 objectId:2319 CD121b +HGNC:5995 IL1RAP interleukin 1 receptor accessory protein protein-coding gene gene with protein product Approved 3q28 03q28 "IL-1RAcP|IL1R3|C3orf13" "Immunoglobulin like domain containing|Interleukin receptors|TIR domain containing" "594|602|1296" 1997-10-09 2015-08-25 3556 ENSG00000196083 OTTHUMG00000156211 uc003fso.2 AB006537 NM_001167929 "CCDS3298|CCDS46982|CCDS54696" Q9NPH3 "9479509|9065432" MGI:104975 RGD:2893 IL1RAP 602626 objectId:1897 +HGNC:5996 IL1RAPL1 interleukin 1 receptor accessory protein like 1 protein-coding gene gene with protein product Approved Xp21.3-p21.2 Xp21.3-p21.2 "OPHN4|TIGIRR-2|IL1R8" "IL1RAPL|MRX34|MRX21|MRX10" "mental retardation, X-linked 34|mental retardation, X-linked 21|mental retardation, X-linked 10" "X-linked mental retardation|I-set domain containing|Immunoglobulin like domain containing|Interleukin receptors|TIR domain containing" "103|593|594|602|1296" 1999-09-07 2016-01-12 2016-10-11 11141 ENSG00000169306 OTTHUMG00000021317 uc004dby.3 AJ243874 NM_014271 CCDS14218 Q9NZN1 "10471494|10757639" MGI:2687319 RGD:727891 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IL1RAPL1 IL1RAPL1 300206 159931 +HGNC:5997 IL1RAPL2 interleukin 1 receptor accessory protein like 2 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "IL-1R9|TIGIRR-1|IL1RAPL-2|IL1R9" "Immunoglobulin like domain containing|Interleukin receptors|TIR domain containing" "594|602|1296" 1999-11-19 2016-01-12 2016-10-05 26280 ENSG00000189108 OTTHUMG00000022141 uc004elz.1 AF181285 NM_017416 CCDS14517 Q9NP60 10757639 MGI:1913106 RGD:1561761 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IL1RAPL2 IL1RAPL2 300277 +HGNC:5998 IL1RL1 interleukin 1 receptor like 1 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 "ST2|FIT-1|ST2L|ST2V|DER4|T1|IL33R" homolog of mouse growth stimulation-expressed "I-set domain containing|Immunoglobulin like domain containing|Interleukin receptors|TIR domain containing" "593|594|602|1296" 1998-12-17 2016-01-12 2016-10-05 9173 ENSG00000115602 OTTHUMG00000130782 uc002tbu.1 D12764 NM_016232 "CCDS2057|CCDS2058|CCDS74548" Q01638 "1482686|10191101|16286016" MGI:98427 RGD:2894 IL1RL1 601203 objectId:1735 +HGNC:5999 IL1RL2 interleukin 1 receptor like 2 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 "IL1R-rp2|IL1RRP2" "Immunoglobulin like domain containing|Interleukin receptors|TIR domain containing" "594|602|1296" 1998-12-17 2016-01-12 2016-10-05 8808 ENSG00000115598 OTTHUMG00000130776 uc002tbs.4 U49065 NM_003854 CCDS2056 Q9HB29 "8898719|10191101|11466363" MGI:1913107 RGD:621782 IL1RL2 604512 objectId:1736 +HGNC:6000 IL1RN interleukin 1 receptor antagonist protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "IL1RA|ICIL-1RA|IL1F3|IRAP|IL-1RN|MGC10430" "interleukin-1 receptor antagonist protein|intracellular interleukin-1 receptor antagonist" "Endogenous ligands|Interleukins|Interleukin receptors" "542|601|602" 1990-11-20 2016-10-12 3557 ENSG00000136689 OTTHUMG00000131341 uc002tjb.4 M55646 NM_173841 "CCDS2113|CCDS2114|CCDS2115|CCDS46396" P18510 "1386337|8432529" MGI:96547 RGD:621159 LRG_188|http://www.lrg-sequence.org/LRG/LRG_188 IL1RN 147679 212902 +HGNC:6001 IL2 interleukin 2 protein-coding gene gene with protein product Approved 4q27 04q27 "IL-2|TCGF" T cell growth factor Interleukins 601 1986-01-01 2016-10-05 3558 ENSG00000109471 OTTHUMG00000133075 uc003ier.4 U25676 XM_017008177 CCDS3726 P60568 3260003 MGI:96548 RGD:620047 IL2 147680 +HGNC:6008 IL2RA interleukin 2 receptor subunit alpha protein-coding gene gene with protein product Approved 10p15.1 10p15.1 CD25 "IL2R|IDDM10" "insulin-dependent diabetes mellitus 10|interleukin 2 receptor, alpha" "CD molecules|Interleukin receptors|Sushi domain containing" "471|602|1179" 1990-01-22 2015-12-11 2016-10-12 3559 ENSG00000134460 OTTHUMG00000017616 uc001iiz.3 X01057 NM_000417 "CCDS7076|CCDS76281" P01589 "3925551|17676041" MGI:96549 RGD:2895 "IL2RAbase: Mutation registry for Interleuken 2 receptor α deficiency|http://structure.bmc.lu.se/idbase/IL2RAbase/|LRG_73|http://www.lrg-sequence.org/LRG/LRG_73" IL2RA 147730 160265 objectId:1695 CD25 +HGNC:6009 IL2RB interleukin 2 receptor subunit beta protein-coding gene gene with protein product Approved 22q12.3 22q12.3 CD122 IL15RB "interleukin 15 receptor, beta|interleukin 2 receptor, beta" "CD molecules|Interleukin receptors" "471|602" 1990-01-22 2015-12-11 2016-10-11 3560 ENSG00000100385 OTTHUMG00000150534 uc003aqv.2 M26062 NM_000878 CCDS13942 P14784 MGI:96550 RGD:2896 IL2RB 146710 355507 objectId:1696 CD122 +HGNC:6010 IL2RG interleukin 2 receptor subunit gamma protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 CD132 "SCIDX1|IMD4|CIDX" "severe combined immunodeficiency|combined immunodeficiency, X-linked|interleukin 2 receptor, gamma" "CD molecules|Fibronectin type III domain containing|Interleukin receptors" "471|555|602" 1992-11-30 2015-12-11 2016-10-12 3561 ENSG00000147168 OTTHUMG00000021787 uc004dyw.4 D11086 NM_000206 CCDS14406 P31785 "1631559|7883965" MGI:96551 RGD:621466 "X-Linked Severe Combined Immuno deficiency SCID|http://www.ncbi.nlm.nih.gov/lovd/home.php?select_db=IL2RG|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IL2RG|LRG_150|http://www.lrg-sequence.org/LRG/LRG_150" IL2RG 308380 122641 objectId:2303 CD132 +HGNC:6011 IL3 interleukin 3 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "IL-3|MULTI-CSF|MCGF|MGC79398|MGC79399" "multilineage-colony-stimulating factor|hematopoietic growth factor|P-cell stimulating factor|mast-cell growth factor|colony-stimulating factor, multiple" interleukin 3 (colony-stimulating factor, multiple) Interleukins 601 2001-06-22 2014-04-04 2015-07-06 3562 ENSG00000164399 OTTHUMG00000059640 uc003kwe.2 M14743 NM_000588 CCDS4149 P08700 3489530 MGI:96552 RGD:2897 IL3 147740 +HGNC:6012 IL3RA interleukin 3 receptor subunit alpha protein-coding gene gene with protein product Approved Xp22.3 and Yp13.3 Xp22.3 and Yp13.3 CD123 interleukin 3 receptor, alpha (low affinity) "CD molecules|Interleukin receptors|Pseudoautosomal region 1" "471|602|715" 1992-10-28 2015-12-11 2015-12-11 3563 ENSG00000185291 OTTHUMG00000021059 uc004fpf.4 M74782 XM_005274431 "CCDS14113|CCDS59158" P26951 1833064 MGI:96553 RGD:628728 IL3RA "308385|430000" objectId:1705 CD123 +HGNC:6014 IL4 interleukin 4 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "BSF1|IL-4|BCGF1|BCGF-1|MGC79402" "B_cell stimulatory factor 1|lymphocyte stimulatory factor 1|B cell growth factor 1" Interleukins 601 1988-08-10 2016-10-05 3565 ENSG00000113520 OTTHUMG00000059724 uc003kxk.3 M23442 NM_000589 "CCDS4158|CCDS4159" P05112 3016727 MGI:96556 RGD:2898 IL4 147780 +HGNC:19094 IL4I1 interleukin 4 induced 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 FIG1 2002-08-20 2016-01-15 259307 ENSG00000104951 OTTHUMG00000183377 uc010eno.4 AF293462 NM_152899 "CCDS12786|CCDS12787" Q96RQ9 12031486 MGI:109552 RGD:1304831 IL4I1 609742 +HGNC:6015 IL4R interleukin 4 receptor protein-coding gene gene with protein product Approved 16p12.1 16p12.1 CD124 interleukin 13 receptor "CD molecules|Interleukin receptors" "471|602" 1990-07-06 2016-10-10 3566 ENSG00000077238 OTTHUMG00000097015 uc002don.5 X52425 XM_011545826 "CCDS10629|CCDS58441" P24394 1679753 MGI:105367 RGD:2899 IL4R 147781 objectId:1697 CD124 +HGNC:6016 IL5 interleukin 5 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "IL-5|EDF|TRF" "interleukin-5|T-cell replacing factor|B cell differentiation factor I|eosinophil differentiation factor|colony-stimulating factor, eosinophil" interleukin 5 (colony-stimulating factor, eosinophil) Interleukins 601 2001-06-22 2014-04-04 2015-07-06 3567 ENSG00000113525 OTTHUMG00000059496 uc003kxe.1 X04688 NM_000879 CCDS4156 P05113 3498940 MGI:96557 RGD:2900 IL5 147850 +HGNC:6017 IL5RA interleukin 5 receptor subunit alpha protein-coding gene gene with protein product Approved 3p26.2 03p26.2 "CDw125|CD125" IL5R interleukin 5 receptor, alpha "CD molecules|Interleukin receptors" "471|602" 1992-06-18 2015-12-11 2016-10-11 3568 ENSG00000091181 OTTHUMG00000090245 uc010hbs.4 M96652 XM_011533677 "CCDS2559|CCDS2560|CCDS46739|CCDS58813" Q01344 1732409 MGI:96558 RGD:70938 IL5RA 147851 objectId:1706 CDw125 +HGNC:6018 IL6 interleukin 6 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "IL-6|BSF2|HGF|HSF" interferon, beta 2 IFNB2 interleukin 6 (interferon, beta 2) "Interferons|Interleukins|Interleukin 6 cytokine family" "598|601|1264" 1986-01-01 2014-04-04 2015-08-25 3569 ENSG00000136244 OTTHUMG00000023178 uc064bxs.1 M18403 NM_000600 "CCDS5375|CCDS83166" P05231 3294161 MGI:96559 RGD:2901 IL6 147620 138462 +HGNC:6019 IL6R interleukin 6 receptor protein-coding gene gene with protein product Approved 1q21.3 01q21.3 CD126 "CD molecules|Immunoglobulin like domain containing|Interleukin receptors" "471|594|602" 2001-06-22 2016-10-05 3570 ENSG00000160712 OTTHUMG00000036073 uc001fez.2 X12830 NM_000565 "CCDS1067|CCDS1068|CCDS72927" P08887 MGI:105304 RGD:2902 IL6R 147880 objectId:1708 CD126 +HGNC:6020 IL6RP1 interleukin 6 receptor pseudogene 1 pseudogene pseudogene Approved 9q22.2 09q22.2 IL6RL1 interleukin 6 receptor-like 1 1991-08-18 2010-10-19 2010-10-19 2014-11-19 157916 ENSG00000234910 OTTHUMG00000020190 NG_002785 1889804 PGOHUM00000236254 +HGNC:6021 IL6ST interleukin 6 signal transducer protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "GP130|CD130" "gp130, oncostatin M receptor|Interleukin-6 receptor subunit beta" interleukin 6 signal transducer (gp130, oncostatin M receptor) "CD molecules|Fibronectin type III domain containing|Interleukin receptors" "471|555|602" 1991-08-12 2014-04-04 2016-07-11 3572 ENSG00000134352 OTTHUMG00000097043 uc003jqq.4 M57230 NM_002184 "CCDS3971|CCDS47209|CCDS54856" P40189 2261637 MGI:96560 RGD:2903 IL6ST 600694 objectId:2317 CD130 +HGNC:6022 IL6STP1 interleukin 6 signal transducer pseudogene 1 pseudogene pseudogene Approved 17p12 17p12 IL6STP "interleukin 6 signal transducer (gp130, oncostatin M receptor) pseudogene|interleukin 6 signal transducer (gp130, oncostatin M receptor) pseudogene 1" 1995-05-16 2010-04-14 2016-06-27 2016-10-05 3573 ENSG00000227018 OTTHUMG00000059144 NG_002748 7736792 PGOHUM00000237232 +HGNC:6023 IL7 interleukin 7 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 IL-7 Interleukins 601 1989-10-12 2016-10-11 3574 ENSG00000104432 OTTHUMG00000164620 uc022awh.2 J04156 XM_011517522 "CCDS6224|CCDS56541|CCDS75755|CCDS75756" P13232 MGI:96561 RGD:2904 IL7 146660 +HGNC:6024 IL7R interleukin 7 receptor protein-coding gene gene with protein product Approved 5p13.2 05p13.2 CD127 "CD molecules|Fibronectin type III domain containing|Interleukin receptors" "471|555|602" 1991-08-07 2016-10-12 3575 ENSG00000168685 OTTHUMG00000090791 uc003jjs.5 M29696 XM_005248299 CCDS3911 P16871 2317865 MGI:96562 RGD:1309776 "IL7Rbase: Mutation registry for Interleukin-7 receptor α deficiency|http://structure.bmc.lu.se/idbase/IL7Rbase/|LRG_74|http://www.lrg-sequence.org/LRG/LRG_74" IL7R 146661 159734 objectId:1698 CD127 +HGNC:6029 IL9 interleukin 9 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "IL-9|HP40|P40" "p40 T-cell and mast cell growth factor|T-cell growth factor p40|p40 cytokine|homolog of mouse T cell and mast cell growth factor 40" Interleukins 601 1990-06-11 2016-10-05 3578 ENSG00000145839 OTTHUMG00000129147 uc003lbb.1 S63356 NM_000590 CCDS4189 P15248 8379467 MGI:96563 RGD:620049 IL9 146931 +HGNC:6030 IL9R interleukin 9 receptor protein-coding gene gene with protein product Approved Xq28 and Yq12 Xq28 and Yq12 CD129 "CD molecules|Interleukin receptors|Pseudoautosomal region 2" "471|602|716" 1992-10-06 2015-08-25 3581 ENSG00000124334 OTTHUMG00000022720 uc004fxn.2 M84747 NM_002186 "CCDS14771|CCDS59180" Q01113 "1376929|8666384" MGI:96564 RGD:2907 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IL9R IL9R 300007 objectId:1699 CD129 +HGNC:6031 IL9RP1 interleukin 9 receptor pseudogene 1 pseudogene pseudogene Approved 9q34 09q34 1995-11-01 2014-11-19 100128449 NG_030094 8666384 +HGNC:6032 IL9RP2 interleukin 9 receptor pseudogene 2 pseudogene pseudogene Approved 10p15.3 10p15.3 1995-11-01 2011-04-28 439945 ENSG00000232420 OTTHUMG00000017525 L39063 NG_009864 8666384 +HGNC:6033 IL9RP3 interleukin 9 receptor pseudogene 3 pseudogene pseudogene Approved 16p13.3 16p13.3 1995-11-01 2011-04-28 729486 ENSG00000226942 OTTHUMG00000060718 L39062 NG_009865 8666384 PGOHUM00000248690 +HGNC:6034 IL9RP4 interleukin 9 receptor pseudogene 4 pseudogene pseudogene Approved 18p11.32 18p11.32 1995-11-01 2014-11-19 100132166 ENSG00000262081 OTTHUMG00000177934 NG_002764 8666384 +HGNC:5962 IL10 interleukin 10 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "CSIF|TGIF|IL10A|IL-10" "cytokine synthesis inhibitory factor|T-cell growth inhibitory factor" Interleukins 601 1991-10-31 2016-10-05 3586 ENSG00000136634 OTTHUMG00000036386 uc001hen.2 M57627 NM_000572 CCDS1467 P22301 9162098 MGI:96537 RGD:2886 IL10 124092 122623 +HGNC:5964 IL10RA interleukin 10 receptor subunit alpha protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "HIL-10R|CDW210A|CD210a|CD210" IL10R interleukin 10 receptor, alpha "CD molecules|Interleukin receptors" "471|602" 1994-05-12 2015-12-11 2016-10-12 3587 ENSG00000110324 OTTHUMG00000166523 uc001prv.5 U00672 NR_026691 CCDS8388 Q13651 8120391 MGI:96538 RGD:620138 LRG_151|http://www.lrg-sequence.org/LRG/LRG_151 IL10RA 146933 244737 objectId:1727 CD210 +HGNC:5965 IL10RB interleukin 10 receptor subunit beta protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "CRF2-4|CDW210B|IL-10R2" "CRFB4|D21S58|D21S66" interleukin 10 receptor, beta "CD molecules|Interleukin receptors" "471|602" 1993-04-06 2015-12-11 2016-10-12 3588 ENSG00000243646 OTTHUMG00000065128 uc002yrk.3 U08988 NM_000628 CCDS13623 Q08334 "8314576|9312047" MGI:109380 RGD:1560373 LRG_152|http://www.lrg-sequence.org/LRG/LRG_152 IL10RB 123889 244742 objectId:1728 CDW210B +HGNC:44303 IL10RB-AS1 IL10RB antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 IFNAR2-AS1 IFNAR2 antisense RNA 1 2013-05-17 2013-05-17 2014-02-12 100288432 ENSG00000223799 OTTHUMG00000065125 NR_038974 +HGNC:5966 IL11 interleukin 11 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "IL-11|AGIF" "adipogenesis inhibitory factor|oprelvekin" "Endogenous ligands|Interleukins|Interleukin 6 cytokine family" "542|601|1264" 1991-08-06 2016-10-11 3589 ENSG00000095752 OTTHUMG00000180789 uc002qks.3 X58377 NM_000641 "CCDS12923|CCDS59423" P20809 1386338 MGI:107613 RGD:621475 IL11 147681 +HGNC:5967 IL11RA interleukin 11 receptor subunit alpha protein-coding gene gene with protein product Approved 9p13.3 09p13.3 interleukin 11 receptor, alpha "Immunoglobulin like domain containing|Interleukin receptors" "594|602" 1995-08-10 2015-12-11 2016-10-05 3590 ENSG00000137070 OTTHUMG00000019837 uc003zvi.5 Z38102 NM_001142784 CCDS6567 Q14626 "7670098|8808281" "MGI:107426|MGI:109123|MGI:3801997" RGD:621332 IL11RA 600939 284155 objectId:1709 +HGNC:5968 IL11RB entry withdrawn withdrawn withdrawn Entry Withdrawn Interleukin receptors 602 2015-03-02 +HGNC:5969 IL12A interleukin 12A protein-coding gene gene with protein product Approved 3q25.33 03q25.33 "CLMF|IL-12A|p35|NFSK" "natural killer cell stimulatory factor 1, 35 kD subunit|cytotoxic lymphocyte maturation factor 1, p35|interleukin 12, p35|IL-12, subunit p35|NF cell stimulatory factor chain 1|interleukin-12 alpha chain|IL35 subunit" NKSF1 interleukin 12A (natural killer cell stimulatory factor 1, cytotoxic lymphocyte maturation factor 1, p35) Interleukins 601 1991-08-08 2014-04-04 2014-11-18 3592 ENSG00000168811 OTTHUMG00000158942 uc003fcx.4 M65271 NM_000882 CCDS3187 P29459 1673147 MGI:96539 RGD:620562 IL12A 161560 239865 +HGNC:49094 IL12A-AS1 IL12A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.33 03q25.33 2013-09-02 2013-09-02 101928376 ENSG00000244040 OTTHUMG00000158951 AK097161 NR_108088 449090 +HGNC:5970 IL12B interleukin 12B protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "CLMF|IL-12B|NKSF|CLMF2" "natural killer cell stimulatory factor-2|cytotoxic lymphocyte maturation factor 2, p40|interleukin 12, p40|natural killer cell stimulatory factor, 40 kD subunit|interleukin-12 beta chain|IL12, subunit p40" NKSF2 interleukin 12B (natural killer cell stimulatory factor 2, cytotoxic lymphocyte maturation factor 2, p40) "Immunoglobulin like domain containing|Interleukins" "594|601" 1991-08-08 2014-04-04 2016-10-12 3593 ENSG00000113302 OTTHUMG00000130307 uc003lxr.2 M65290 NM_002187 CCDS4346 P29460 1673147 MGI:96540 RGD:628704 "IL12Bbase: Mutation registry for Interleukin-12 (IL-12) p40 deficiency|http://structure.bmc.lu.se/idbase/IL12Bbase/|LRG_71|http://www.lrg-sequence.org/LRG/LRG_71" IL12B 161561 122629 +HGNC:5971 IL12RB1 interleukin 12 receptor subunit beta 1 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 CD212 IL12RB interleukin 12 receptor, beta 1 "CD molecules|Fibronectin type III domain containing|Interleukin receptors" "471|555|602" 1995-09-14 2015-12-11 2016-10-12 3594 ENSG00000096996 OTTHUMG00000183417 uc002nhx.2 U03187 XM_011527966 "CCDS32957|CCDS54232" P42701 9284929 MGI:104579 RGD:620025 "IL12RB1base: Mutation registry for Interleukin-12 receptor ß1 deficiency|http://structure.bmc.lu.se/idbase/IL12RB1base/|LRG_72|http://www.lrg-sequence.org/LRG/LRG_72" IL12RB1 601604 122634 objectId:1715 CD212 +HGNC:5972 IL12RB2 interleukin 12 receptor subunit beta 2 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 interleukin 12 receptor, beta 2 "Fibronectin type III domain containing|Interleukin receptors" "555|602" 1997-02-10 2015-12-11 2016-10-05 3595 ENSG00000081985 OTTHUMG00000009094 uc001ddu.3 U64198 NM_001559 "CCDS638|CCDS58006|CCDS58007|CCDS72805" Q99665 "9284929|8943050" MGI:1270861 RGD:620026 IL12RB2 601642 238973 objectId:1716 +HGNC:5973 IL13 interleukin 13 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "P600|IL-13|ALRH|BHR1|MGC116786|MGC116788|MGC116789" "allergic rhinitis|Bronchial hyperresponsiveness-1 (bronchial asthma)" Interleukins 601 1993-04-07 2016-10-05 3596 ENSG00000169194 OTTHUMG00000059723 uc003kxj.2 U31120 NM_002188 CCDS4157 P35225 MGI:96541 RGD:68949 IL13 147683 +HGNC:5974 IL13RA1 interleukin 13 receptor subunit alpha 1 protein-coding gene gene with protein product Approved Xq24 Xq24 "IL-13Ra|NR4|CD213a1" "IL13 receptor alpha-1 chain|CD213a1 antigen" interleukin 13 receptor, alpha 1 "CD molecules|Interleukin receptors" "471|602" 1998-03-26 2015-12-11 2015-12-11 3597 ENSG00000131724 OTTHUMG00000022258 uc004eqs.4 U62858 NM_001560 CCDS14573 P78552 "8910586|9013879" MGI:105052 RGD:628741 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IL13RA1 IL13RA1 300119 objectId:1700 CD213a1 +HGNC:5975 IL13RA2 interleukin 13 receptor subunit alpha 2 protein-coding gene gene with protein product Approved Xq23 Xq23 "IL-13R|IL13BP|CD213a2|CT19" cancer/testis antigen 19 interleukin 13 receptor, alpha 2 "CD molecules|Interleukin receptors" "471|602" 1998-03-26 2015-12-11 2015-12-11 3598 ENSG00000123496 OTTHUMG00000022229 uc004epx.4 X95302 NM_000640 CCDS14565 Q14627 "8663118|9083087" MGI:1277954 RGD:620838 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IL13RA2 IL13RA2 300130 objectId:1701 CD213a2 +HGNC:5976 IL14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:5977 IL15 interleukin 15 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "IL-15|MGC9721" Interleukins 601 1994-07-11 2016-10-05 3600 ENSG00000164136 OTTHUMG00000133418 uc003iit.4 U14407 NM_172175 "CCDS3755|CCDS3756" P40933 8178155 MGI:103014 RGD:2887 IL15 600554 +HGNC:5978 IL15RA interleukin 15 receptor subunit alpha protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "CD215|IL-15RA" interleukin 15 receptor, alpha "CD molecules|Interleukin receptors|Sushi domain containing" "471|602|1179" 1995-08-10 2015-12-11 2016-04-25 3601 ENSG00000134470 OTTHUMG00000017612 uc021pmo.2 U31628 "NM_172200|NM_002189" "CCDS58069|CCDS7074|CCDS7075|CCDS73065" Q13261 8530383 MGI:104644 RGD:1305149 IL15RA 601070 objectId:1702 CD215 +HGNC:5980 IL16 interleukin 16 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "LCF|IL-16|prIL-16|HsT19289|FLJ42735|FLJ16806" "prointerleukin 16|lymphocyte chemoattractant factor" interleukin 16 (lymphocyte chemoattractant factor) "Interleukins|PDZ domain containing" "601|1220" 1997-07-25 2011-07-14 2016-10-05 3603 ENSG00000172349 OTTHUMG00000144186 uc021ssh.2 U82972 NM_172217 "CCDS10317|CCDS42069|CCDS53966" Q14005 9144227 MGI:1270855 RGD:1583872 IL16 603035 +HGNC:5981 IL17A interleukin 17A protein-coding gene gene with protein product Approved 6p12.2 06p12.2 "IL-17A|IL-17" cytotoxic T-lymphocyte-associated protein 8 "CTLA8|IL17" interleukin 17 (cytotoxic T-lymphocyte-associated serine esterase 8) Interleukins 601 1993-10-25 2006-04-26 2006-04-26 2016-10-05 3605 ENSG00000112115 OTTHUMG00000014840 uc003pak.1 U32659 NM_002190 CCDS4937 Q16552 8390535 MGI:107364 RGD:2888 IL17A 603149 +HGNC:5982 IL17B interleukin 17B protein-coding gene gene with protein product Approved 5q32 05q32 "IL-17B|ZCYTO7|IL-20|MGC138900|MGC138901|NIRF" neuronal interleukin-17-related factor Interleukins 601 2000-01-20 2016-10-05 27190 ENSG00000127743 OTTHUMG00000130051 uc003lqo.4 AF184969 NM_014443 CCDS4297 Q9UHF5 10639155 MGI:1928397 RGD:620614 IL17B 604627 +HGNC:5983 IL17C interleukin 17C protein-coding gene gene with protein product Approved 16q24.2 16q24.2 "IL-17C|CX2|IL-21|MGC126884|MGC138401" Interleukins 601 2000-01-20 2016-10-11 27189 ENSG00000124391 OTTHUMG00000173241 uc002fla.4 AF152099 NM_013278 CCDS42217 Q9P0M4 10639155 MGI:2446486 RGD:1582798 IL17C 604628 +HGNC:5984 IL17D interleukin 17D protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "IL-22|IL-27|IL-17D|IL27|FLJ30846" interleukin 27 Interleukins 601 2000-05-02 2016-10-05 53342 ENSG00000172458 OTTHUMG00000016521 uc001unm.3 AY078238 NM_138284 CCDS9292 Q8TAD2 12097364 MGI:2446510 RGD:1595926 IL17D 607587 +HGNC:16404 IL17F interleukin 17F protein-coding gene gene with protein product Approved 6p12.2 06p12.2 "IL-17F|ML-1|ML1" Interleukins 601 2002-03-18 2016-10-12 112744 ENSG00000112116 OTTHUMG00000014845 uc003pam.2 AF384857 NM_052872 CCDS4938 Q96PD4 "11591732|11591768" MGI:2676631 RGD:1311398 LRG_356|http://www.lrg-sequence.org/LRG/LRG_356 IL17F 606496 266117 +HGNC:5985 IL17RA interleukin 17 receptor A protein-coding gene gene with protein product Approved 22q11.1 22q11.1 "hIL-17R|IL-17RA|CDw217|CD217" IL17R interleukin 17 receptor "CD molecules|Interleukin receptors" "471|602" 1999-10-29 2006-04-26 2006-04-26 2016-10-12 23765 ENSG00000177663 OTTHUMG00000150026 uc002zly.5 U58917 NM_014339 "CCDS13739|CCDS77645" Q96F46 "9367539|10591208" MGI:107399 RGD:1306559 LRG_355|http://www.lrg-sequence.org/LRG/LRG_355 IL17RA 605461 266109 objectId:1738 CDw217 +HGNC:18015 IL17RB interleukin 17 receptor B protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "IL17RH1|EVI27|CRL4" IL17BR interleukin 17B receptor Interleukin receptors 602 2002-01-18 2003-07-09 2015-08-25 55540 ENSG00000056736 OTTHUMG00000158280 uc003dha.4 AF212365 NM_172234 CCDS2874 Q9NRM6 "10749887|10815801" MGI:1355292 RGD:1311392 IL17RB 605458 objectId:1739 +HGNC:18358 IL17RC interleukin 17 receptor C protein-coding gene gene with protein product Approved 3p25.3 03p25.3 IL17-RL Interleukin receptors 602 2003-07-07 2014-11-19 84818 ENSG00000163702 OTTHUMG00000128648 uc003bua.4 BC006411 NM_032732 "CCDS2590|CCDS2591|CCDS46746|CCDS56240|CCDS56241|CCDS74898" Q8NAC3 11706037 MGI:2159336 RGD:1306392 IL17RC 610925 431928 objectId:1740 +HGNC:17616 IL17RD interleukin 17 receptor D protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "SEF|IL17RLM|FLJ35755|IL-17RD" "Interleukin receptors|TIR domain containing" "602|1296" 2003-07-07 2016-10-05 54756 ENSG00000144730 OTTHUMG00000150171 uc003dil.3 AF494208 NM_017563 "CCDS2880|CCDS82790" Q8NFM7 "11802164|12604616" MGI:2159727 RGD:1565237 IL17RD 606807 353734 objectId:1741 +HGNC:18439 IL17RE interleukin 17 receptor E protein-coding gene gene with protein product Approved 3p25.3 03p25.3 FLJ23658 Interleukin receptors 602 2003-07-07 2015-08-25 132014 ENSG00000163701 OTTHUMG00000128649 uc003btw.4 AF458069 NM_153480 "CCDS2589|CCDS54552" Q8NFR9 MGI:1889371 RGD:735148 IL17RE 614995 objectId:1742 +HGNC:33808 IL17REL interleukin 17 receptor E like protein-coding gene gene with protein product Approved 22q13.33 22q13.33 FLJ41993 2007-12-14 2016-06-13 2016-06-13 400935 ENSG00000188263 OTTHUMG00000150242 uc003bje.2 AK123987 NM_001001694 CCDS33679 Q6ZVW7 IL17REL 613414 +HGNC:5986 IL18 interleukin 18 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "IGIF|IL1F4|IL-1g|IL-18" interferon-gamma-inducing factor interleukin 18 (interferon-gamma-inducing factor) Interleukins 601 1997-07-25 2014-04-04 2015-07-06 3606 ENSG00000150782 OTTHUMG00000167006 uc001pnb.2 U90434 NM_001562 "CCDS44731|CCDS58180" Q14116 "7477296|9693051" MGI:107936 RGD:2889 IL18 600953 +HGNC:5987 IL18BP interleukin 18 binding protein protein-coding gene gene with protein product Approved 11q13.4 11q13.4 IL18BPa MC51L-53L-54L homolog gene product Immunoglobulin like domain containing 594 1999-05-21 2016-10-05 10068 ENSG00000137496 OTTHUMG00000133713 uc001orf.2 AF110798 NM_173042 "CCDS8206|CCDS44666" O95998 10023777 MGI:1333800 RGD:620042 IL18BP 604113 +HGNC:5988 IL18R1 interleukin 18 receptor 1 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 "IL1RRP|IL-1Rrp|CD218a" "CD molecules|Immunoglobulin like domain containing|Interleukin receptors|TIR domain containing" "471|594|602|1296" 1998-12-17 2016-10-05 8809 ENSG00000115604 OTTHUMG00000130780 uc002tbw.7 U43672 NM_003855 CCDS2060 Q13478 "8626725|10191101" MGI:105383 RGD:1308589 IL18R1 604494 objectId:1737 CDw218a +HGNC:5989 IL18RAP interleukin 18 receptor accessory protein protein-coding gene gene with protein product Approved 2q12.1 02q12.1 "AcPL|CD218b" "CD molecules|Immunoglobulin like domain containing|Interleukin receptors|TIR domain containing" "471|594|602|1296" 1998-12-17 2015-08-25 8807 ENSG00000115607 OTTHUMG00000130777 uc002tbx.4 AF077346 NM_003853 CCDS2061 O95256 9792649 MGI:1338888 RGD:727867 IL18RAP 604509 objectId:2320 CDw218b +HGNC:5990 IL19 interleukin 19 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "IL-19|MDA1|ZMDA1|IL-10C|NG.1" melanoma differentiation associated protein-like protein Interleukins 601 2000-03-29 2016-10-05 29949 ENSG00000142224 OTTHUMG00000036387 uc001heo.3 AF192498 NM_153758 "CCDS1468|CCDS1469" Q9UHD0 11196675 MGI:1890472 RGD:1583546 IL19 605687 +HGNC:6002 IL20 interleukin 20 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "ZCYTO10|IL10D|IL-20" Interleukins 601 2000-03-29 2016-10-05 50604 ENSG00000162891 OTTHUMG00000036456 uc031vlv.2 AF224266 NM_018724 CCDS1470 Q9NYY1 11163236 MGI:1890473 RGD:1583578 IL20 605619 +HGNC:6003 IL20RA interleukin 20 receptor subunit alpha protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "ZCYTOR7|IL-20R1" "interleukin 20 receptor, alpha|interleukin 20 receptor alpha subunit" Interleukin receptors 602 2000-05-23 2015-12-11 2015-12-11 53832 ENSG00000016402 OTTHUMG00000015654 uc003qhj.5 AF184971 NM_014432 "CCDS5181|CCDS64535|CCDS64536" Q9UHF4 "10875937|11163236" MGI:3605069 RGD:1307335 IL20RA 605620 objectId:1729 +HGNC:6004 IL20RB interleukin 20 receptor subunit beta protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "DIRS1|IL-20R2|MGC34923" FNDC6 "fibronectin type III domain containing 6|interleukin 20 receptor beta|interleukin 20 receptor beta subunit" "Fibronectin type III domain containing|Interleukin receptors" "555|602" 2000-05-23 2015-12-11 2015-12-11 53833 ENSG00000174564 OTTHUMG00000159779 uc003eri.3 BC033292 NM_144717 CCDS3093 Q6UXL0 "11163236|16703417" MGI:2143266 RGD:1566151 IL20RB 605621 objectId:1730 +HGNC:40298 IL20RB-AS1 IL20RB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q22.3 03q22.3 IL20RB antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100862678 ENSG00000249407 OTTHUMG00000163091 uc062oel.1 +HGNC:6005 IL21 interleukin 21 protein-coding gene gene with protein product Approved 4q27 04q27 "Za11|IL-21" Interleukins 601 2000-03-29 2016-10-05 59067 ENSG00000138684 OTTHUMG00000133073 uc003ies.4 AF254069 NM_021803 "CCDS3727|CCDS75189" Q9HBE4 "11081504|17947662" MGI:1890474 RGD:1307384 IL21 605384 402379 +HGNC:40299 IL21-AS1 IL21 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q27 04q27 IL21 antisense RNA 1 (non-protein coding) 2012-08-09 2012-08-15 2014-11-19 100996941 ENSG00000227145 OTTHUMG00000150127 uc003iet.4 BC045668 NR_104126 +HGNC:6006 IL21R interleukin 21 receptor protein-coding gene gene with protein product Approved 16p12.1 16p12.1 CD360 "CD molecules|Interleukin receptors" "471|602" 2000-03-29 2016-10-12 50615 ENSG00000103522 OTTHUMG00000131675 uc002doq.2 AF254067 NM_181078 CCDS10630 Q9HBE5 11081504 MGI:1890475 RGD:1304950 LRG_731|http://www.lrg-sequence.org/LRG/LRG_731 IL21R 605383 357435 objectId:1703 +HGNC:27551 IL21R-AS1 IL21R antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p12.1 16p12.1 IL21R antisense RNA 1 (non-protein coding) 2012-06-22 2012-08-15 2012-10-12 283888 ENSG00000259954 OTTHUMG00000176806 uc002dot.4 AK093371 NR_037158 +HGNC:14900 IL22 interleukin 22 protein-coding gene gene with protein product Approved 12q15 12q15 "ILTIF|IL-21|zcyto18|IL-TIF|IL-D110|TIFa|TIFIL-23|IL-22|MGC79382|MGC79384" IL-10-related T-cell-derived inducible factor Interleukins 601 2001-03-12 2014-05-22 50616 ENSG00000127318 OTTHUMG00000169119 uc010stb.2 AF279437 NM_020525 CCDS8982 Q9GZX6 "10954742|10875937" "MGI:1355307|MGI:2151139" RGD:1561292 IL22 605330 +HGNC:13700 IL22RA1 interleukin 22 receptor subunit alpha 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 CRF2-9 IL22R "interleukin 22 receptor|interleukin 22 receptor, alpha 1" Interleukin receptors 602 2000-10-16 2002-12-06 2015-12-11 2015-12-11 58985 ENSG00000142677 OTTHUMG00000003041 uc001biq.3 AF286095 NM_021258 CCDS247 Q8N6P7 10875937 MGI:2663588 RGD:1559655 IL22RA1 605457 objectId:1731 +HGNC:14901 IL22RA2 interleukin 22 receptor subunit alpha 2 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "CRF2-S1|IL-22BP" interleukin 22 receptor, alpha 2 Interleukin receptors 602 2002-12-02 2015-12-11 2016-10-11 116379 ENSG00000164485 OTTHUMG00000015655 uc003qhm.3 AY044429 NM_181309 "CCDS5182|CCDS5183|CCDS5184" Q969J5 "11481447|11390454" MGI:2665114 RGD:1303169 IL22RA2 606648 objectId:1732 +HGNC:15488 IL23A interleukin 23 subunit alpha protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "SGRF|IL23P19|IL-23|IL-23A|P19" interleukin-six, G-CSF related factor interleukin 23, alpha subunit p19 Interleukins 601 2001-04-10 2015-12-11 2016-10-11 51561 ENSG00000110944 OTTHUMG00000187402 uc001sla.4 AB030000 NM_016584 CCDS8916 Q9NPF7 11114383 MGI:1932410 RGD:620873 IL23A 605580 +HGNC:19100 IL23R interleukin 23 receptor protein-coding gene gene with protein product Approved 1p31.3 01p31.3 IL-23R 2004-10-18 2016-10-05 149233 ENSG00000162594 OTTHUMG00000009092 uc001ddo.4 AF461422 NM_144701 CCDS637 Q5VWK5 12023369 MGI:2181693 RGD:1586368 IL23R 607562 122638 objectId:1717 +HGNC:11346 IL24 interleukin 24 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "mda-7|IL10B|Mob-5|C49A|FISP|IL-24" "melanoma differentiation association protein 7|suppression of tumorigenicity 16 (melanoma differentiation)|IL-4-induced secreted protein" ST16 Interleukins 601 1999-12-02 2001-06-29 2016-10-05 11009 ENSG00000162892 OTTHUMG00000036459 uc001hew.3 U16261 NM_006850 "CCDS1471|CCDS53465|CCDS53466|CCDS73021" Q13007 "8545104|8799171" MGI:2135548 RGD:621484 IL24 604136 +HGNC:13765 IL25 interleukin 25 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "IL-25|IL-17E" IL17E interleukin 17E Interleukins 601 2001-01-26 2006-05-17 2006-05-17 2014-11-19 64806 ENSG00000166090 OTTHUMG00000028749 uc001wjr.3 AF305200 NM_172314 "CCDS9597|CCDS45086" Q9H293 "11058597|11754819" MGI:2155888 RGD:1561632 IL25 605658 +HGNC:17119 IL26 interleukin 26 protein-coding gene gene with protein product Approved 12q15 12q15 "AK155|IL-26" Interleukins 601 2001-11-23 2008-08-04 55801 ENSG00000111536 OTTHUMG00000169114 uc001stx.2 AJ251549 NM_018402 CCDS8981 Q9NPH9 "10729163|11528524" IL26 605679 +HGNC:19157 IL27 interleukin 27 protein-coding gene gene with protein product Approved 16p12.1-p11.2 16p12.1-p11.2 "IL-27|p28|IL27p28|IL-27A|IL27A|MGC71873" IL30 interleukin 30 Interleukins 601 2002-11-04 2003-12-19 2003-12-17 2016-10-11 246778 ENSG00000197272 OTTHUMG00000097023 uc002dqc.3 AY099296 NM_145659 CCDS10633 Q8NEV9 12121660 MGI:2384409 RGD:1561420 IL27 608273 +HGNC:17290 IL27RA interleukin 27 receptor subunit alpha protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "WSX-1|TCCR|CRL1|WSX1|zcytor1|IL-27R" T-cell cytokine receptor type 1 interleukin 27 receptor, alpha "Fibronectin type III domain containing|Interleukin receptors" "555|602" 2004-02-10 2015-12-11 2016-10-11 9466 ENSG00000104998 OTTHUMG00000181990 uc002mxx.5 AF053004 NM_004843 CCDS12303 Q6UWB1 "9600072|11057672" MGI:1355318 RGD:1305029 IL27RA 605350 objectId:2318 +HGNC:19372 IL31 interleukin 31 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 IL-31 Interleukins 601 2003-11-06 2014-11-19 386653 ENSG00000204671 OTTHUMG00000168916 uc001ubv.3 AY499343 NM_001014336 CCDS31919 Q6EBC2 15184896 MGI:1923649 RGD:1585183 IL31 609509 +HGNC:18969 IL31RA interleukin 31 receptor A protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "CRL3|GLM-R|CRL|Glmr|IL-31RA" "Fibronectin type III domain containing|Interleukin receptors" "555|602" 2003-11-06 2014-11-19 133396 ENSG00000164509 OTTHUMG00000097045 uc003jql.4 AY499339 NM_139017 "CCDS3970|CCDS56365|CCDS56366|CCDS56367|CCDS75244|CCDS75245" Q8NI17 "15184896|11877449" MGI:2180511 RGD:1586478 IL31RA 609510 220737 objectId:1710 +HGNC:16830 IL32 interleukin 32 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "NK4|TAIF|TAIFb|TAIFd" natural killer cell transcript 4 Interleukins 601 2005-02-08 2014-11-18 9235 ENSG00000008517 OTTHUMG00000167498 uc002cto.4 M59807 NM_004221 "CCDS32377|CCDS32378|CCDS32379|CCDS45394|CCDS76811" P24001 "1729377|9653642" IL32 606001 +HGNC:16028 IL33 interleukin 33 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "DVS27|DKFZp586H0523|NF-HEV|IL1F11" "DVS27-related protein|nuclear factor for high endothelial venules|interleukin-1 family, member 11" C9orf26 chromosome 9 open reading frame 26 (NF-HEV) Interleukins 601 2003-12-18 2006-11-20 2006-11-20 2014-11-19 90865 ENSG00000137033 OTTHUMG00000019516 uc064sap.1 AB024518 NM_033439 "CCDS6468|CCDS56563|CCDS56564|CCDS83341" O95760 "10566975|12819012" MGI:1924375 RGD:1311155 IL33 608678 +HGNC:28529 IL34 interleukin 34 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "MGC34647|IL-34" C16orf77 chromosome 16 open reading frame 77 Interleukins 601 2006-08-01 2008-06-04 2008-06-04 2014-11-18 146433 ENSG00000157368 OTTHUMG00000137581 uc002ezh.2 BC029804 NM_152456 CCDS10895 Q6ZMJ4 18467591 MGI:1923777 RGD:1586038 IL34 612081 +HGNC:15562 IL36A interleukin 36, alpha protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "FIL1|FIL1E|IL-1F6|IL1(EPSILON)|MGC129553|MGC129552" IL1F6 interleukin 1 family, member 6 (epsilon) Interleukins 601 2002-08-02 2011-06-06 2011-06-06 2016-10-05 27179 ENSG00000136694 OTTHUMG00000153320 uc010yxr.3 AF201831 NM_014440 CCDS42734 Q9UHA7 10625660 MGI:1859324 RGD:1306869 IL36A 605509 +HGNC:15564 IL36B interleukin 36, beta protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "FIL1|IL-1H2|IL-1F8|FILI-(ETA)|IL1-ETA|IL1H2|MGC126880|MGC126882" IL1F8 interleukin 1 family, member 8 (eta) Interleukins 601 2002-08-02 2011-06-06 2011-06-06 2016-10-05 27177 ENSG00000136696 OTTHUMG00000131338 uc002tiq.2 AF201833 NM_014438 "CCDS2109|CCDS2110" Q9NZH7 "10625660|10512743|16646978" MGI:1916927 RGD:1307847 IL36B 605508 +HGNC:15741 IL36G interleukin 36, gamma protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "IL-1H1|IL-1RP2|IL-1F9|IL1H1|IL1E" "interleukin-1 homolog 1|interleukin 1-related protein 2|interleukin-1 epsilon" IL1F9 interleukin 1 family, member 9 Interleukins 601 2002-08-02 2011-06-06 2011-06-06 2016-10-05 56300 ENSG00000136688 OTTHUMG00000131336 uc002tio.3 AF200492 NM_019618 "CCDS2108|CCDS62992" Q9NZH8 "10860666|10744718|11991722|11991723" MGI:2449929 RGD:1563019 IL36G 605542 +HGNC:15561 IL36RN interleukin 36 receptor antagonist protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "FIL1|FIL1(DELTA)|FIL1D|IL1HY1|IL1RP3|IL1L1|IL-1F5|IL36RA|MGC29840" "family of interleukin 1-delta|interleukin-1 receptor antagonist homolog 1|interleukin-1 HY1|IL-1 related protein 3" IL1F5 interleukin 1 family, member 5 (delta) Interleukins 601 2002-08-02 2011-06-06 2011-06-06 2016-10-12 26525 ENSG00000136695 OTTHUMG00000131337 uc002tis.4 AF201830 NM_173170 CCDS2111 Q9UBH0 "10625660|10512743|11574262" MGI:1859325 RGD:1311212 LRG_730|http://www.lrg-sequence.org/LRG/LRG_730 IL36RN 605507 281457 +HGNC:15563 IL37 interleukin 37 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "FIL1|FIL1Z|FIL1(ZETA)|IL-1H4|IL-1RP1|IL-1F7" "interleukin 1, zeta|interleukin-1 homolog 4|interleukin-1-related protein" IL1F7 interleukin 1 family, member 7 (zeta) Interleukins 601 2002-08-02 2011-06-06 2011-06-06 2016-10-05 27178 ENSG00000125571 OTTHUMG00000131345 uc002tij.4 AF201832 NM_014439 "CCDS2103|CCDS2104|CCDS2105|CCDS2106|CCDS2107" Q9NZH6 "10625660|10512743|12496389" IL37 605510 +HGNC:13331 ILCF entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:28741 ILDR1 immunoglobulin like domain containing receptor 1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 MGC50831 DFNB42 "deafness, autosomal recessive 42|immunoglobulin-like domain containing receptor 1" 2004-07-27 2016-01-21 2016-10-05 286676 ENSG00000145103 OTTHUMG00000159481 uc003eer.4 BC044240 NM_175924 "CCDS3008|CCDS56270|CCDS56271" Q86SU0 "15641023|21255762" MGI:2146574 RGD:1307792 ILDR1 609739 259373 +HGNC:18131 ILDR2 immunoglobulin like domain containing receptor 2 protein-coding gene gene with protein product Approved 1q24.1 01q24.1 LISCH-like C1orf32 "chromosome 1 open reading frame 32|immunoglobulin-like domain containing receptor 2" 2004-04-30 2008-12-18 2016-01-21 2016-01-21 387597 ENSG00000143195 OTTHUMG00000034320 uc001gdx.3 AF503509 NM_199351 CCDS1256 Q71H61 MGI:1196370 RGD:1596420 ILDR2 +HGNC:6037 ILF2 interleukin enhancer binding factor 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 NF45 "interleukin enhancer binding factor 2, 45kD|interleukin enhancer binding factor 2, 45kDa" 1994-11-15 2012-12-04 2015-08-25 3608 ENSG00000143621 OTTHUMG00000037087 uc001fcr.5 U10323 NM_004515 "CCDS1050|CCDS72919" Q12905 7519613 MGI:1915031 RGD:1305734 ILF2 603181 +HGNC:44695 ILF2P1 interleukin enhancer binding factor 2 pseudogene 1 pseudogene pseudogene Approved 3p14.1 03p14.1 2012-12-04 2012-12-04 100421506 ENSG00000244226 OTTHUMG00000158735 NG_025702 PGOHUM00000238049 +HGNC:44696 ILF2P2 interleukin enhancer binding factor 2 pseudogene 2 pseudogene pseudogene Approved 14q13.2 14q13.2 2012-12-04 2012-12-04 644616 ENSG00000257720 OTTHUMG00000170568 NG_022839 PGOHUM00000247771 +HGNC:6038 ILF3 interleukin enhancer binding factor 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "NF90|MPHOSPH4|MPP4|DRBP76|NFAR-1" M-phase phosphoprotein 4 "interleukin enhancer binding factor 3, 90kD|interleukin enhancer binding factor 3, 90kDa" 1994-11-15 2015-11-09 2015-11-09 3609 ENSG00000129351 OTTHUMG00000180587 uc002mpo.4 U10324 XM_017026763 "CCDS12246|CCDS12247|CCDS45965|CCDS45966|CCDS45967" Q12906 "7519613|8885239" MGI:1339973 RGD:619734 ILF3 603182 +HGNC:27115 ILF3-AS1 ILF3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 19p13.2 19p13.2 "ILF3 antisense RNA 1 (non-protein coding)|ILF3 antisense RNA 1" 2012-08-10 2012-08-16 2012-10-12 147727 ENSG00000267100 uc002mpj.4 "BC007593|BC044911|DB002247" NR_024333 12477932 +HGNC:6040 ILK integrin linked kinase protein-coding gene gene with protein product Approved 11p15.4 11p15.4 integrin-linked kinase Ankyrin repeat domain containing 403 1997-05-22 2015-11-12 2016-10-12 3611 ENSG00000166333 OTTHUMG00000133407 uc001mef.5 U40282 NM_004517 "CCDS7768|CCDS60712|CCDS60713" Q13418 8538749 MGI:1195267 RGD:620063 LRG_444|http://www.lrg-sequence.org/LRG/LRG_444 ILK 602366 objectId:2041 +HGNC:15566 ILKAP ILK associated serine/threonine phosphatase protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "DKFZP434J2031|FLJ10181|PPM1O" protein phosphatase, Mg2+/Mn2+ dependent 1O "integrin-linked kinase-associated serine/threonine phosphatase 2C|integrin-linked kinase-associated serine/threonine phosphatase" Protein phosphatases, Mg2+/Mn2+ dependent 701 2001-06-01 2015-11-12 2015-11-20 80895 ENSG00000132323 OTTHUMG00000133334 uc002vxv.4 AY024365 NM_030768 CCDS2526 Q9H0C8 MGI:1914694 RGD:620128 ILKAP 3.1.3.16 +HGNC:6041 ILVBL ilvB acetolactate synthase like protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "209L8|AHAS|ILV2H|MGC1269|FLJ39061|MGC19535|HACL1L" "acetolactate synthase homolog|2-hydroxyacyl-CoA lyase 1 like" ilvB (bacterial acetolactate synthase)-like 1999-09-07 2016-06-22 2016-10-05 10994 ENSG00000105135 OTTHUMG00000165630 uc002nam.5 U61263 NM_006844 CCDS12325 A1L0T0 8954801 MGI:1351911 RGD:1307988 ILVBL 605770 +HGNC:26317 IMMP1L inner mitochondrial membrane peptidase subunit 1 protein-coding gene gene with protein product Approved 11p13 11p13 FLJ25059 IMMP1 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) 2005-09-13 2015-06-25 2015-06-25 2015-06-25 196294 ENSG00000148950 OTTHUMG00000166226 uc001msy.1 NM_144981 CCDS7874 Q96LU5 15814844 MGI:1913791 RGD:1587441 IMMP1L 612323 +HGNC:51131 IMMP1LP1 inner mitochondrial membrane peptidase subunit 1 pseudogene 1 pseudogene pseudogene Approved 11q13.1 11q13.1 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) pseudogene 1 2014-07-30 2015-06-25 2015-06-25 729101 ENSG00000270269 OTTHUMG00000184758 NG_030175 PGOHUM00000291002 +HGNC:51132 IMMP1LP2 inner mitochondrial membrane peptidase subunit 1 pseudogene 2 pseudogene pseudogene Approved 12q24.13 12q24.13 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) pseudogene 2 2014-07-30 2015-06-25 2015-11-30 105369987 ENSG00000258159 OTTHUMG00000169801 NG_042205 PGOHUM00000291809 +HGNC:51134 IMMP1LP3 inner mitochondrial membrane peptidase subunit 1 pseudogene 3 pseudogene pseudogene Approved 7p22.3 07p22.3 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) pseudogene 3 2014-07-30 2015-06-25 2015-06-25 106481715 ENSG00000271098 OTTHUMG00000184490 NG_045041 PGOHUM00000302504 +HGNC:14598 IMMP2L inner mitochondrial membrane peptidase subunit 2 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 IMP2 IMMP2L-IT1 "IMP2 inner mitochondrial membrane protease-like (S. cerevisiae)|IMMP2L intronic transcript 1 (non-protein coding)|IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)" 2003-07-11 2015-06-25 2016-10-05 83943 ENSG00000184903 OTTHUMG00000155023 uc010ljr.3 AF359563 NM_032549 CCDS5753 Q96T52 11254443 MGI:2135611 RGD:2323665 IMMP2L 605977 122646 S26.A09 +HGNC:6047 IMMT inner membrane mitochondrial protein protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "P87|P89|HMP|MINOS2|Mic60" "mitofilin|mitochondrial inner membrane organizing system 2" inner membrane protein, mitochondrial (mitofilin) 2000-03-09 2016-01-11 2016-01-11 10989 ENSG00000132305 OTTHUMG00000153170 uc002sqz.4 D21094 NM_006839 "CCDS46355|CCDS46356|CCDS46357" Q16891 "9168817|8039717" MGI:1923864 RGD:1310684 IMMT 600378 +HGNC:6048 IMMTP1 inner membrane mitochondrial protein pseudogene 1 pseudogene pseudogene Approved 21q22.3 21q22.3 mitofilin IMMTP inner membrane protein, mitochondrial (mitofilin) pseudogene 2000-05-23 2010-04-14 2016-01-11 2016-01-11 54045 ENSG00000229880 OTTHUMG00000086935 NG_000919 PGOHUM00000263062 +HGNC:14497 IMP3 IMP3, U3 small nucleolar ribonucleoprotein protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "FLJ10968|BRMS2" "MRPS4|C15orf12" "mitochondrial ribosomal protein S4|chromosome 15 open reading frame 12|IMP3, U3 small nucleolar ribonucleoprotein, homolog (yeast)" 2001-01-26 2005-07-14 2014-02-19 2016-10-05 55272 ENSG00000177971 OTTHUMG00000142840 uc002bat.3 AB051628 NM_018285 CCDS10282 Q9NV31 "11543634|12655004" MGI:1916119 RGD:1306825 IMP3 612980 +HGNC:49385 IMP3P1 IMP3 pseudogene 1 pseudogene pseudogene Approved 9p23 09p23 2013-10-22 2013-10-22 646087 ENSG00000230589 OTTHUMG00000019551 NG_021606 PGOHUM00000235962 +HGNC:49386 IMP3P2 IMP3 pseudogene 2 pseudogene pseudogene Approved 7q32.1 07q32.1 2013-10-22 2013-10-22 106480272 ENSG00000239722 OTTHUMG00000158273 NG_044038 PGOHUM00000233563 +HGNC:30856 IMP4 IMP4 homolog, U3 small nucleolar ribonucleoprotein protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "MGC19606|BXDC4" "IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)|IMP4, U3 small nucleolar ribonucleoprotein" 2005-02-21 2015-11-12 2015-11-12 92856 ENSG00000136718 OTTHUMG00000131627 uc002tra.2 BC010042 NM_033416 CCDS2160 Q96G21 "8619474|9110174|12655004" MGI:106572 RGD:1308463 IMP4 612981 +HGNC:6050 IMPA1 inositol monophosphatase 1 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 myo-inositol monophosphatase 1 IMPA inositol(myo)-1(or 4)-monophosphatase 1 Phosphoinositide phosphatases 1079 1993-08-26 2016-04-05 2016-10-05 3612 ENSG00000133731 OTTHUMG00000164682 uc003ych.3 NM_005536 "CCDS6231|CCDS47883|CCDS47884" P29218 1377913 MGI:1933158 RGD:69254 IMPA1 602064 objectId:1463 3.1.3.25 +HGNC:33956 IMPA1P1 inositol monophosphatase 1 pseudogene 1 pseudogene pseudogene Approved 8q21.13 08q21.13 IMPA1P inositol(myo)-1(or 4)-monophosphatase 1 pseudogene 2008-01-28 2016-04-05 2016-04-05 2016-04-05 650747 ENSG00000251521 OTTHUMG00000164680 NG_007612 PGOHUM00000257193 +HGNC:6051 IMPA2 inositol monophosphatase 2 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 myo-inositol monophosphatase 2 inositol(myo)-1(or 4)-monophosphatase 2 Phosphoinositide phosphatases 1079 1997-08-18 2016-04-05 2016-10-05 3613 ENSG00000141401 OTTHUMG00000131693 uc002kqp.3 AF014398 XM_011525659 CCDS11855 O14732 9322233 MGI:2149728 RGD:628692 IMPA2 605922 objectId:1464 3.1.3.25 +HGNC:20387 IMPACT impact RWD domain protein protein-coding gene gene with protein product Approved 18q11.2 18q11.2 RWDD5 RWD domain containing 5 Impact homolog (mouse) 2006-01-24 2012-12-07 2016-10-05 55364 ENSG00000154059 OTTHUMG00000131943 uc002kvh.5 AB026264 NM_018439 CCDS11886 Q9P2X3 11116084 MGI:1098233 RGD:1591977 IMPACT 615319 +HGNC:26019 IMPAD1 inositol monophosphatase domain containing 1 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 "FLJ20421|IMPA3|gPAPP" golgi-resident nucleotide phosphatase 2005-08-02 2016-10-07 54928 ENSG00000104331 OTTHUMG00000164415 uc003xte.5 NM_017813 CCDS6169 Q9NX62 21549340 MGI:1915720 RGD:1306455 IMPAD1 614010 280591 "3.1.3.7|3.1.3.25" +HGNC:6052 IMPDH1 inosine monophosphate dehydrogenase 1 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "sWSS2608|LCA11" RP10 "retinitis pigmentosa 10 (autosomal dominant)|IMP (inosine 5'-monophosphate) dehydrogenase 1" 1992-12-08 2016-06-21 2016-10-05 3614 ENSG00000106348 OTTHUMG00000157713 uc011kon.2 NM_000883 "CCDS34748|CCDS34749|CCDS43643|CCDS47699|CCDS47700|CCDS55161" P20839 "1969416|11875049|11875050" MGI:96567 RGD:1311108 Mutations of the Inosine Monophosphate DehydrogenaseType 1 Gene|http://www.retina-international.org/files/sci-news/impdhmut.htm IMPDH1 146690 122649 objectId:2624 1.1.1.205 +HGNC:19912 IMPDH1P1 inosine monophosphate dehydrogenase 1 pseudogene 1 pseudogene pseudogene Approved 9p13.3 09p13.3 bA537H15.4 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 1 2005-10-04 2016-06-27 2016-06-27 340499 AL354989 NG_005146 +HGNC:33957 IMPDH1P2 inosine monophosphate dehydrogenase 1 pseudogene 2 pseudogene pseudogene Approved Xp11.4 Xp11.4 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 2 2008-01-28 2016-06-27 2016-06-27 402394 NG_005150 +HGNC:33958 IMPDH1P3 inosine monophosphate dehydrogenase 1 pseudogene 3 pseudogene pseudogene Approved 7q33 07q33 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 3 2008-01-28 2016-06-27 2016-10-11 136307 ENSG00000214815 OTTHUMG00000155791 NG_005144 +HGNC:33959 IMPDH1P4 inosine monophosphate dehydrogenase 1 pseudogene 4 pseudogene pseudogene Approved Xp11.3 Xp11.3 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 4 2008-01-28 2016-06-27 2016-06-27 139334 ENSG00000237206 OTTHUMG00000021385 NG_005145 PGOHUM00000241252 +HGNC:33960 IMPDH1P5 inosine monophosphate dehydrogenase 1 pseudogene 5 pseudogene pseudogene Approved 10q22.3 10q22.3 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 5 2008-01-28 2016-06-27 2016-08-17 340780 ENSG00000213513 OTTHUMG00000018544 NG_005147 PGOHUM00000289914 +HGNC:33961 IMPDH1P6 inosine monophosphate dehydrogenase 1 pseudogene 6 pseudogene pseudogene Approved 8q24.13 08q24.13 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 6 2008-01-28 2016-06-27 2016-06-27 392267 ENSG00000254294 OTTHUMG00000165092 NG_005149 +HGNC:33962 IMPDH1P7 inosine monophosphate dehydrogenase 1 pseudogene 7 pseudogene pseudogene Approved 2q32.1 02q32.1 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 7 2008-01-28 2016-06-27 2016-06-27 391467 NG_005148 +HGNC:33963 IMPDH1P8 inosine monophosphate dehydrogenase 1 pseudogene 8 pseudogene pseudogene Approved 3p25.1 03p25.1 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 8 2008-01-28 2016-06-27 2016-10-11 131961 ENSG00000224728 OTTHUMG00000156052 NG_005143 +HGNC:33964 IMPDH1P9 inosine monophosphate dehydrogenase 1 pseudogene 9 pseudogene pseudogene Approved 6p22.3 06p22.3 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 9 2008-01-28 2016-06-27 2016-06-27 441132 NG_005151 +HGNC:33965 IMPDH1P10 inosine monophosphate dehydrogenase 1 pseudogene 10 pseudogene pseudogene Approved 2q33.1 02q33.1 IMP (inosine monophosphate) dehydrogenase 1 pseudogene 10 2008-01-28 2016-06-27 2016-06-27 100874399 ENSG00000232133 OTTHUMG00000154711 NG_032196 +HGNC:6054 IMPDH1P11 inosine monophosphate dehydrogenase 1 pseudogene 11 pseudogene pseudogene Approved 16p13.2 16p13.2 IMPDHL1 "IMP (inosine monophosphate) dehydrogenase-like 1|IMP (inosine monophosphate) dehydrogenase 1 pseudogene 11" 1993-06-23 2008-01-28 2016-06-27 2016-10-11 727833 ENSG00000261647 OTTHUMG00000177089 L19709 XR_015181 7905856 +HGNC:6053 IMPDH2 inosine monophosphate dehydrogenase 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 IMP (inosine 5'-monophosphate) dehydrogenase 2 1992-12-08 2016-06-21 2016-10-05 3615 ENSG00000178035 OTTHUMG00000156771 uc003cvt.4 XM_006713128 CCDS2786 P12268 "9858805|1969416" MGI:109367 RGD:735092 IMPDH2 146691 objectId:2625 1.1.1.205 +HGNC:6055 IMPG1 interphotoreceptor matrix proteoglycan 1 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "IPM150|GP147" SPACR sialoprotein associated with cones and rods 1997-08-28 2004-05-25 2016-10-05 3617 ENSG00000112706 OTTHUMG00000015063 uc032xbg.2 AF017776 NM_001563 "CCDS4985|CCDS75483" Q17R60 MGI:1926876 RGD:620499 IMPG1 602870 376545 +HGNC:18362 IMPG2 interphotoreceptor matrix proteoglycan 2 protein-coding gene gene with protein product Approved 3q12.3 03q12.3 "IPM200|RP56" 2002-03-15 2016-10-05 50939 ENSG00000081148 OTTHUMG00000159091 uc003duq.3 AF173155 NM_016247 CCDS2940 Q9BZV3 10542133 MGI:3044955 RGD:708358 IMPG2 607056 239001 +HGNC:6057 INA internexin neuronal intermediate filament protein alpha protein-coding gene gene with protein product Approved 10q24.33 10q24.33 NF-66 NEF5 internexin neuronal intermediate filament protein, alpha Intermediate filaments Type IV 611 1999-03-24 2015-12-04 2016-10-05 9118 ENSG00000148798 OTTHUMG00000018986 uc001kws.3 S78296 NM_032727 CCDS7545 Q16352 7769995 MGI:96568 RGD:2911 INA 605338 HGNC:6057 +HGNC:27406 INAFM1 InaF motif containing 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 PRR24 proline rich 24 2009-09-11 2014-08-01 2016-02-15 2016-02-15 255783 ENSG00000257704 OTTHUMG00000170128 BC022076 NM_178511 CCDS46131 C9JVW0 12477932 MGI:1913550 RGD:2301983 +HGNC:35165 INAFM2 InaF motif containing 2 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 OGU1 osteogenesis up-regulated transcript 1 LINC00984 "long intergenic non-protein coding RNA 984|InaF-motif containing 2" 2013-07-01 2014-08-01 2016-02-15 2016-02-15 100505573 ENSG00000259330 OTTHUMG00000172415 "AI125471|AI125670" NM_001301268 P0DMQ5 19531736 MGI:1915354 RGD:11361547 +HGNC:32224 INCA1 inhibitor of CDK, cyclin A1 interacting protein 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 2009-04-20 2009-04-20 2010-03-19 388324 ENSG00000196388 OTTHUMG00000177768 uc002gam.3 "AY601906|AAT09152" NM_213726 "CCDS11064|CCDS54074" Q0VD86 "15159402|18756329" MGI:2144284 RGD:1306656 INCA1 +HGNC:6058 INCENP inner centromere protein protein-coding gene gene with protein product Approved 11q12.3 11q12.3 FLJ31633 "inner centromere protein antigens (135kD, 155kD)|inner centromere protein antigens 135/155kDa" Chromosomal passenger complex 1338 1988-06-09 2015-11-06 2015-11-06 3619 ENSG00000149503 OTTHUMG00000167470 uc001nsx.2 AF282265 NM_020238 "CCDS31582|CCDS44624" Q9NQS7 "1860899|11453556" MGI:1313288 RGD:1305292 INCENP 604411 +HGNC:6060 INE1 inactivation escape 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved Xp11.3 Xp11.3 NCRNA00010 non-protein coding RNA 10 1999-07-07 2008-08-13 2016-10-05 8552 ENSG00000224975 OTTHUMG00000046428 uc004dhl.4 Y10696 NR_024616 O15225 9244435 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=INE1 INE1 300164 +HGNC:6061 INE2 inactivation escape 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved Xp22.2 Xp22.2 NCRNA00011 non-protein coding RNA 11 1999-07-07 2008-08-13 2012-10-16 8551 ENSG00000281371 OTTHUMG00000189580 uc004cxf.1 Y10697 NR_002725 9244435 300165 +HGNC:23791 INF2 inverted formin, FH2 and WH2 domain containing protein-coding gene gene with protein product Approved 14q32.33 14q32.33 MGC13251 inverted formin 2 "C14orf151|C14orf173" "chromosome 14 open reading frame 151|chromosome 14 open reading frame 173" 2004-06-25 2007-11-29 2007-11-29 2014-11-19 64423 ENSG00000203485 OTTHUMG00000029811 uc001ypb.3 AK025709 NM_022489 "CCDS9989|CCDS45173" Q27J81 16818491 MGI:1917685 RGD:1308350 INF2 610982 225380 +HGNC:6062 ING1 inhibitor of growth family member 1 protein-coding gene gene with protein product Approved 13q34 13q34 "p33ING1|p33ING1b|p24ING1c|p33|p47|p47ING1a" "inhibitor of growth 1|tumor suppressor ING1|growth inhibitor ING1|growth inhibitory protein ING1" PHD finger proteins 88 1996-10-26 2015-11-09 2015-11-09 3621 ENSG00000153487 OTTHUMG00000017346 uc001vrh.5 NM_005537 "CCDS9515|CCDS9516|CCDS9517|CCDS9518" Q9UK53 "8944021|9186514" MGI:1349481 RGD:1306330 ING1 601566 122654 +HGNC:6063 ING2 inhibitor of growth family member 2 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 p33ING2 ING1L inhibitor of growth family, member 1-like PHD finger proteins 88 1998-08-10 2005-02-11 2015-11-09 2015-11-09 3622 ENSG00000168556 OTTHUMG00000150502 uc003ivs.2 AB012853 NM_001564 CCDS3833 Q9H160 10072587 MGI:1916510 RGD:1307347 ING2 604215 +HGNC:14587 ING3 inhibitor of growth family member 3 protein-coding gene gene with protein product Approved 7q31.31 07q31.31 "p47ING3|FLJ20089|Eaf4|MEAF4" PHD finger proteins 88 2001-02-09 2015-11-09 2016-10-05 54556 ENSG00000071243 OTTHUMG00000141270 uc003vjn.4 AF074968 NM_019071 "CCDS5778|CCDS35497" Q9NXR8 12080476 MGI:1919027 RGD:1310556 ING3 607493 +HGNC:19423 ING4 inhibitor of growth family member 4 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "p29ING4|my036" PHD finger proteins 88 2002-10-30 2015-11-09 2016-10-05 51147 ENSG00000111653 OTTHUMG00000141274 uc001qpv.5 AF063594 NM_198287 "CCDS8555|CCDS44812|CCDS44813|CCDS44814|CCDS44815|CCDS44816" Q9UNL4 12750254 MGI:107307 RGD:1309407 ING4 608524 +HGNC:19421 ING5 inhibitor of growth family member 5 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "FLJ23842|p28ING5" PHD finger proteins 88 2002-10-30 2015-11-09 2015-11-09 84289 ENSG00000168395 OTTHUMG00000151501 uc002wcd.4 AF189286 NM_032329 "CCDS33425|CCDS82585|CCDS82586" Q8WYH8 12750254 MGI:1922816 RGD:1307908 ING5 608525 +HGNC:6064 INGX inhibitor of growth family, X-linked (pseudogene) pseudogene pseudogene Approved Xq13.1 Xq13.1 ING1-like ING2 inhibitor of growth family, member 2 2000-01-20 2005-02-11 2016-01-06 2016-10-05 27160 ENSG00000243468 OTTHUMG00000024051 AF149724 NR_002226 10626813 INGX 300452 PGOHUM00000241382 +HGNC:6065 INHA inhibin alpha subunit protein-coding gene gene with protein product Approved 2q35 02q35 inhibin, alpha 2001-06-22 2016-05-27 2016-05-27 3623 ENSG00000123999 OTTHUMG00000059237 uc002vmk.3 NM_002191 CCDS2444 P05111 3345731 MGI:96569 RGD:2912 INHA 147380 +HGNC:6066 INHBA inhibin beta A subunit protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "inhibin, beta A (activin A, activin AB alpha polypeptide)|inhibin, beta A|inhibin beta A" Endogenous ligands 542 1986-01-01 2016-05-27 2016-10-05 3624 ENSG00000122641 OTTHUMG00000023574 uc003thr.4 XM_017012174 CCDS5464 P08476 3345731 MGI:96570 RGD:62074 INHBA 147290 395930 +HGNC:40303 INHBA-AS1 INHBA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 INHBA antisense RNA 1 (non-protein coding) 2012-05-02 2012-08-15 2014-11-19 285954 ENSG00000224116 OTTHUMG00000155114 uc003tht.5 NR_027118 +HGNC:6067 INHBB inhibin beta B subunit protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "inhibin, beta B (activin AB beta polypeptide)|inhibin, beta B" Endogenous ligands 542 1986-01-01 2016-05-27 2016-05-27 3625 ENSG00000163083 OTTHUMG00000131437 uc002tmn.3 NM_002193 CCDS2132 P09529 3345731 MGI:96571 RGD:2913 INHBB 147390 +HGNC:6068 INHBC inhibin beta C subunit protein-coding gene gene with protein product Approved 12q13.3 12q13.3 inhibin, beta C 1995-08-29 2016-05-27 2016-10-11 3626 ENSG00000175189 OTTHUMG00000169994 uc001snv.3 NM_005538 CCDS8938 P55103 7826378 MGI:105932 RGD:621194 INHBC 601233 +HGNC:24029 INHBE inhibin beta E subunit protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "activin|MGC4638" inhibin, beta E 2004-01-12 2016-05-27 2016-10-11 83729 ENSG00000139269 OTTHUMG00000169995 uc001snw.4 NM_031479 CCDS8939 P58166 12242034 MGI:109269 RGD:621196 INHBE 612031 +HGNC:24994 INIP INTS3 and NABP interacting protein protein-coding gene gene with protein product Approved 9q32 09q32 "HSPC043|hSSBIP1|SOSS-C|MISE" "hSSB-interacting protein 1|sensor of single-strand DNA complex subunit C|minute INTS3/hSSB-associated element" C9orf80 chromosome 9 open reading frame 80 2004-01-29 2012-06-19 2012-06-19 2014-11-19 58493 ENSG00000148153 OTTHUMG00000020509 uc004bgg.4 AF161411 NM_021218 CCDS6785 Q9NRY2 11042152 MGI:1913459 RGD:1307983 INIP 613273 +HGNC:6069 INMT indolethylamine N-methyltransferase protein-coding gene gene with protein product Approved 7p14.3 07p14.3 1999-09-07 2015-08-25 11185 ENSG00000241644 OTTHUMG00000167163 uc003tbs.1 NM_006774 "CCDS5430|CCDS56479" O95050 10552930 MGI:102963 RGD:1597087 INMT 604854 2.1.1.49 +HGNC:41995 INMT-FAM188B INMT-FAM188B readthrough (NMD candidate) other readthrough Approved 7p14.3 07p14.3 2011-05-31 2013-05-09 2014-11-19 100526825 ENSG00000254959 OTTHUMG00000022897 uc064con.1 NR_037598.1 +HGNC:26956 INO80 INO80 complex subunit protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "KIAA1259|Ino80|hINO80|INO80A" INO80 complex subunit A INOC1 "INO80 complex homolog 1 (S. cerevisiae)|INO80 homolog (S. cerevisiae)" "INO80 complex |DNA helicases" "595|1167" 2005-10-30 2008-08-07 2013-08-21 2014-11-18 54617 ENSG00000128908 OTTHUMG00000130209 uc001zni.5 AB033085 NM_017553 CCDS10071 Q9ULG1 "16298340|16230350|20237820" MGI:1915392 RGD:1310969 INO80 610169 3.6.1.3 +HGNC:13324 INO80B INO80 complex subunit B protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "HMGIYL4|PAPA-1|hIes2|PAP-1BP|IES2" "PAP-1 binding protein|IES2 homolog (S. cerevisiae)" "HMGA1L4|ZNHIT4" "high mobility group AT-hook 1-like 4|zinc finger, HIT type 4" "Zinc fingers HIT-type|INO80 complex " "83|595" 2003-11-26 2008-08-07 2008-08-07 2014-11-19 83444 ENSG00000115274 OTTHUMG00000129959 uc002slg.3 AB054538 NM_031288 CCDS1942 Q9C086 16230350 MGI:1917270 RGD:1562258 INO80B 616456 +HGNC:49199 INO80B-WBP1 INO80B-WBP1 readthrough (NMD candidate) other readthrough Approved 2p13.1 02p13.1 2013-09-30 2013-09-30 2015-07-22 100532735 ENSG00000274049 OTTHUMG00000187278 NR_037849 +HGNC:26994 INO80C INO80 complex subunit C protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "FLJ38183|hIes6|IES6" IES6 homolog (S. cerevisiae) C18orf37 chromosome 18 open reading frame 37 INO80 complex 595 2004-06-02 2008-08-07 2008-08-07 2014-11-19 125476 ENSG00000153391 OTTHUMG00000132564 uc002kyy.5 NM_194281 "CCDS11914|CCDS45853|CCDS77177" Q6PI98 16230350 MGI:2443014 RGD:1310199 INO80C +HGNC:25997 INO80D INO80 complex subunit D protein-coding gene gene with protein product Approved 2q33.3 02q33.3 FLJ20309 INO80 complex 595 2008-08-07 2014-11-19 54891 ENSG00000114933 OTTHUMG00000154649 uc002vaz.4 NM_017759 CCDS46500 Q53TQ3 16230350 MGI:3027003 RGD:1304808 INO80D +HGNC:26905 INO80E INO80 complex subunit E protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ90652 CCDC95 coiled-coil domain containing 95 INO80 complex 595 2006-03-24 2008-08-07 2008-08-07 2014-11-18 283899 ENSG00000169592 OTTHUMG00000132114 uc002dvg.2 AK075133 NM_173618 "CCDS10665|CCDS76853" Q8NBZ0 16230350 MGI:2141881 RGD:1359572 INO80E +HGNC:6071 INPP1 inositol polyphosphate-1-phosphatase protein-coding gene gene with protein product Approved 2q32.2 02q32.2 Phosphoinositide phosphatases 1079 1993-10-14 2016-10-05 3628 ENSG00000151689 OTTHUMG00000132672 uc002ury.5 NM_002194 CCDS2305 P49441 8390685 MGI:104848 RGD:1306071 INPP1 147263 objectId:1450 3.1.3.57 +HGNC:6072 INPP3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-02-25 +HGNC:6074 INPP4A inositol polyphosphate-4-phosphatase type I A protein-coding gene gene with protein product Approved 2q11.2 02q11.2 INPP4 "inositol polyphosphate-4-phosphatase, type I, 107kD|inositol polyphosphate-4-phosphatase, type I, 107kDa" C2 domain containing 823 1993-10-14 2015-08-13 2015-08-13 3631 ENSG00000040933 OTTHUMG00000153106 uc010yvk.3 U26398 NM_001566 "CCDS46369|CCDS46370|CCDS46371|CCDS46372" Q96PE3 "7608176|9295334" MGI:1931123 RGD:68386 INPP4A 600916 objectId:1451 3.1.3.66 +HGNC:6075 INPP4B inositol polyphosphate-4-phosphatase type II B protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "inositol polyphosphate-4-phosphatase, type II, 105kD|inositol polyphosphate-4-phosphatase, type II, 105kDa" "C2 domain containing|Phosphoinositide phosphatases" "823|1079" 1998-12-23 2015-08-13 2016-10-11 8821 ENSG00000109452 OTTHUMG00000161341 uc003iix.5 U96922 NM_003866 "CCDS3757|CCDS82958" O15327 9295334 MGI:2158925 RGD:620470 INPP4B 607494 objectId:1452 3.1.3.66 +HGNC:6076 INPP5A inositol polyphosphate-5-phosphatase A protein-coding gene gene with protein product Approved 10q26.3 10q26.3 5PTASE "CTCL tumor antigen HD-CL-02|43 kDa inositol polyphosphate 5-phophatase|inositol polyphosphate 5-phophatase, 40kDa|InsP3 5-phosphatase|type I inositol-1,4,5-trisphosphate 5-phosphatase" "inositol polyphosphate-5-phosphatase, 40kD|inositol polyphosphate-5-phosphatase, 40kDa" Phosphoinositide phosphatases 1079 1993-10-14 2015-08-13 2015-08-25 3632 ENSG00000068383 OTTHUMG00000019293 uc001llp.4 X77567 NM_005539 CCDS7669 Q14642 8013665 MGI:2686961 RGD:1306168 INPP5A 600106 objectId:1453 3.1.3.56 +HGNC:6077 INPP5B inositol polyphosphate-5-phosphatase B protein-coding gene gene with protein product Approved 1p34.3 01p34.3 type II inositol 1,4,5-trisphosphate 5-phosphatase "inositol polyphosphate-5-phosphatase, 75kD|inositol polyphosphate-5-phosphatase, 75kDa" Phosphoinositide phosphatases 1079 1993-10-14 2015-08-13 2016-10-05 3633 ENSG00000204084 OTTHUMG00000004436 uc001ccg.2 M74161 NM_005540 "CCDS41306|CCDS72760" P32019 1718960 MGI:103257 RGD:1311511 INPP5B 147264 objectId:1454 3.1.3.56 +HGNC:6078 INPP5C entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-03-01 +HGNC:6079 INPP5D inositol polyphosphate-5-phosphatase D protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "SHIP|hp51CN|SHIP1" SH2 domain-containing inositol 5'-phosphatase 1 "inositol polyphosphate-5-phosphatase, 145kD|inositol polyphosphate-5-phosphatase, 145kDa" "SH2 domain containing|Phosphoinositide phosphatases" "741|1079" 1996-04-04 2015-08-13 2015-08-13 3635 ENSG00000168918 OTTHUMG00000133688 uc032ovq.2 U57650 NM_001017915 "CCDS74672|CCDS77543" Q92835 "8643691|8874179" MGI:107357 RGD:2914 INPP5D 601582 objectId:1455 3.1.3.86 +HGNC:21474 INPP5E inositol polyphosphate-5-phosphatase E protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "PPI5PIV|CORS1|pharbin" JBTS1 "Joubert syndrome 1|inositol polyphosphate-5-phosphatase, 72 kDa" Phosphoinositide phosphatases 1079 2003-06-13 2015-08-13 2016-10-07 56623 ENSG00000148384 OTTHUMG00000020927 uc004cho.4 AF187891 NM_019892 CCDS7000 Q9NRR6 "10764818|10577920|19668216" MGI:1927753 RGD:620478 INPP5E 613037 208347 objectId:1456 3.1.3.36 +HGNC:17054 INPP5F inositol polyphosphate-5-phosphatase F protein-coding gene gene with protein product Approved 10q26.11 10q26.11 "SAC2|KIAA0966|hSac2" Phosphoinositide phosphatases 1079 2003-06-10 2016-10-12 22876 ENSG00000198825 OTTHUMG00000019158 uc001leo.4 AB023183 NM_014937 "CCDS7616|CCDS58098|CCDS81513" Q9Y2H2 "11274189|25869669" MGI:2141867 RGD:1305777 LRG_1061|http://www.lrg-sequence.org/LRG/LRG_1061 INPP5F 609389 +HGNC:8956 INPP5J inositol polyphosphate-5-phosphatase J protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "INPP5|PIPP" PIB5PA phosphatidylinositol (4,5) bisphosphate 5-phosphatase, A Phosphoinositide phosphatases 1079 2000-01-12 2008-09-09 2008-09-09 2016-10-07 27124 ENSG00000185133 OTTHUMG00000151206 uc003ajt.5 U45975 NM_001002837 "CCDS46687|CCDS63453|CCDS63454|CCDS63455|CCDS74847" Q15735 10591208 MGI:2158663 RGD:620541 INPP5J 606481 objectId:1457 3.1.3.56 +HGNC:33882 INPP5K inositol polyphosphate-5-phosphatase K protein-coding gene gene with protein product Approved 17p13.3 17p13.3 SKIP skeletal muscle and kidney enriched inositol phosphatase Phosphoinositide phosphatases 1079 2008-09-09 2015-08-25 51763 ENSG00000132376 OTTHUMG00000150648 uc002fsr.4 NM_016532 "CCDS11004|CCDS11005" Q9BT40 "10753883|12536145" MGI:1194899 RGD:1359130 INPP5K 607875 objectId:1458 3.1.3.56 +HGNC:6080 INPPL1 inositol polyphosphate phosphatase like 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 SHIP2 "51C protein|SH2 domain-containing inositol 5'-phosphatase 2|phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" "SH2 domain containing|Sterile alpha motif domain containing|Phosphoinositide phosphatases" "741|760|1079" 1995-05-12 2015-11-23 2016-10-07 3636 ENSG00000165458 OTTHUMG00000167879 uc001osf.4 Y14385 NM_001567 CCDS8213 O15357 8530088 MGI:1333787 RGD:68396 INPPL1 600829 323427 objectId:1459 3.1.3.86 +HGNC:6081 INS insulin protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "IDDM2|IDDM1" insulin-dependent diabetes mellitus 2 Endogenous ligands 542 2001-06-22 2015-09-02 3630 ENSG00000254647 OTTHUMG00000009558 uc001lvo.2 X70508 NM_000207 CCDS7729 P01308 "6243748|7773291" MGI:96573 RGD:2916 INS 176730 168345 +HGNC:33527 INS-IGF2 INS-IGF2 readthrough other readthrough Approved 11p15.5 11p15.5 2011-03-23 2014-11-19 723961 ENSG00000129965 OTTHUMG00000166213 uc001lvm.4 DQ104205 NM_001042376.2 CCDS41598 F8WCM5 16531418 RGD:2915 INS-IGF2 +HGNC:6082 INSAF entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-07-22 +HGNC:33116 INSC inscuteable homolog (Drosophila) protein-coding gene gene with protein product Approved 11p15.2 11p15.2 inscuteable spindle orientation adaptor protein 2006-08-17 2014-11-19 387755 ENSG00000188487 OTTHUMG00000165838 uc001mly.5 AB231744 NM_001031853 "CCDS41621|CCDS41622|CCDS60735|CCDS60736" Q1MX18 16458856 MGI:1917942 RGD:1311379 INSC 610668 +HGNC:6083 INSIG1 insulin induced gene 1 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "CL-6|MGC1405" INSIG-1 membrane protein 1997-05-15 2016-10-05 3638 ENSG00000186480 OTTHUMG00000151330 uc003wly.3 NM_198336 "CCDS5938|CCDS5939" O15503 9268630 MGI:1916289 RGD:708457 INSIG1 602055 +HGNC:20452 INSIG2 insulin induced gene 2 protein-coding gene gene with protein product Approved 2q14.1-q14.2 02q14.1-q14.2 2003-02-17 2016-10-11 51141 ENSG00000125629 OTTHUMG00000058518 uc002tlk.4 AF527632 NM_016133 CCDS2122 Q9Y5U4 12242332 MGI:1920249 RGD:631417 INSIG2 608660 +HGNC:6084 INSL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:6085 INSL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:6086 INSL3 insulin like 3 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "RLF|MGC119818|MGC119819" prepro-INSL3 RLNL "relaxin-like factor|insulin-like 3 (Leydig cell)" Endogenous ligands 542 1993-11-02 2015-11-23 2016-01-15 3640 ENSG00000248099 OTTHUMG00000183481 uc002nhm.3 NM_005543 "CCDS12365|CCDS58655" P51460 8020942 MGI:108427 RGD:620117 INSL3 146738 +HGNC:6087 INSL4 insulin like 4 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 EPIL insulin-like 4 (placenta) 1995-07-14 2015-11-23 2016-10-05 3641 ENSG00000120211 OTTHUMG00000019494 uc003ziy.4 NM_002195 CCDS6459 Q14641 "8666396|9730618" INSL4 600910 +HGNC:6088 INSL5 insulin like 5 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 prepro-INSL5 insulin-like 5 Endogenous ligands 542 1999-01-08 2015-11-23 2015-11-23 10022 ENSG00000172410 OTTHUMG00000009164 uc001dcw.4 AF133816 NM_005478 CCDS634 Q9Y5Q6 10458910 MGI:1346085 RGD:7747960 INSL5 606413 +HGNC:6089 INSL6 insulin like 6 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 RIF1 relaxin/insulin-like factor 1 insulin-like 6 1999-09-09 2015-11-23 2016-10-05 11172 ENSG00000120210 OTTHUMG00000019489 uc003zix.4 AF156094 NM_007179 CCDS6458 Q9Y581 10819760 MGI:1351595 RGD:62061 INSL6 606414 +HGNC:6090 INSM1 INSM transcriptional repressor 1 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "IA-1|IA1" "insulinoma-associated 1|insulinoma associated 1" SNAG transcriptional repressors 1259 1995-01-03 2016-05-04 2016-10-05 3642 ENSG00000173404 OTTHUMG00000032004 uc002wrx.4 NM_002196 CCDS13143 Q01101 "8188699|16569215" MGI:1859980 RGD:6486258 INSM1 600010 +HGNC:17539 INSM2 INSM transcriptional repressor 2 protein-coding gene gene with protein product Approved 14q13.2 14q13.2 "IA-6|Mlt1" insulinoma-associated 2 "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 2003-01-14 2016-05-04 2016-10-11 84684 ENSG00000168348 OTTHUMG00000140223 uc001wth.1 AF260323 NM_032594 CCDS9657 Q96T92 21343251 MGI:1930787 RGD:1306949 INSM2 614027 +HGNC:6091 INSR insulin receptor protein-coding gene gene with protein product Approved 19p13.2 19p13.2 CD220 "Receptor Tyrosine Kinases|CD molecules|Fibronectin type III domain containing" "321|471|555" 1986-01-01 2016-10-05 3643 ENSG00000171105 OTTHUMG00000181992 uc002mgd.2 M10051 XM_011527988 "CCDS12176|CCDS42487" P06213 2983222 MGI:96575 RGD:2917 INSR 147670 122664 objectId:1800 CD220 +HGNC:6092 INSRL entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-02 +HGNC:6093 INSRR insulin receptor related receptor protein-coding gene gene with protein product Approved 1q23.1 01q23.1 IRR "Receptor Tyrosine Kinases|Fibronectin type III domain containing" "321|555" 1990-05-18 2016-04-05 2016-10-05 3645 ENSG00000027644 OTTHUMG00000041291 uc010pht.3 J05046 NM_014215 CCDS1160 P14616 "2768234|2249481" MGI:1346037 RGD:67399 INSRR 147671 objectId:1802 +HGNC:6095 INSSA2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-06-08 +HGNC:24555 INTS1 integrator complex subunit 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "DKFZp586J0619|KIAA1440|INT1|NET28" 2006-03-15 2015-08-25 26173 ENSG00000164880 OTTHUMG00000151449 uc003skn.3 AB037861 XM_017011959 CCDS47526 Q8N201 16239144 MGI:1915760 RGD:1308908 INTS1 611345 +HGNC:29241 INTS2 integrator complex subunit 2 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 INT2 KIAA1287 KIAA1287 2005-07-26 2006-03-15 2006-03-15 2006-04-26 57508 ENSG00000108506 OTTHUMG00000179234 uc002izm.4 AB033113 NM_020748 "CCDS45750|CCDS82181" Q9H0H0 16239144 MGI:1917672 RGD:1305547 INTS2 611346 +HGNC:26153 INTS3 integrator complex subunit 3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "FLJ21919|INT3|SOSS-A" sensor of single-strand DNA complex subunit A C1orf60 chromosome 1 open reading frame 60 2005-05-13 2006-03-15 2006-03-15 2014-11-19 65123 ENSG00000143624 OTTHUMG00000037089 uc001fct.4 BX640950 NM_023015 CCDS1052 Q68E01 16239144 MGI:2140050 RGD:1304593 INTS3 611347 +HGNC:25048 INTS4 integrator complex subunit 4 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "INT4|MGC16733|MST093" 2006-03-15 2014-11-19 92105 ENSG00000149262 OTTHUMG00000166629 uc001oys.4 BC015664 NM_033547 CCDS31644 Q96HW7 16239144 MGI:1917164 RGD:1305036 INTS4 611348 +HGNC:21925 INTS4P1 integrator complex subunit 4 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 FLJ25037 INTS4L1 integrator complex subunit 4-like 1 2008-10-21 2014-10-01 2014-10-01 2014-10-01 285905 ENSG00000164669 OTTHUMG00000156510 XR_041315 PGOHUM00000302754 +HGNC:22351 INTS4P2 integrator complex subunit 4 pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 MGC133166 INTS4L2 integrator complex subunit 4-like 2 2008-10-21 2014-10-01 2014-10-01 2015-02-02 644619 ENSG00000273024 OTTHUMG00000156558 BC111554 NR_027392 PGOHUM00000302764 +HGNC:29352 INTS5 integrator complex subunit 5 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 INT5 KIAA1698 KIAA1698 2005-10-28 2006-03-15 2006-03-15 2014-11-19 80789 ENSG00000185085 OTTHUMG00000167605 uc001nud.3 AK123587 NM_030628 CCDS8027 Q6P9B9 16239144 MGI:1923578 RGD:1309370 INTS5 611349 +HGNC:14879 INTS6 integrator complex subunit 6 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "DICE1|HDB|Notchl2|DBI-1|DDX26A|INT6" DDX26 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26 2001-03-30 2006-03-15 2006-03-15 2014-11-18 26512 ENSG00000102786 OTTHUMG00000016945 uc001vfk.4 AF097645 NM_012141 "CCDS9428|CCDS41890|CCDS45048|CCDS76636" Q9UL03 "10467397|16239144" MGI:1202397 RGD:1309480 INTS6 604331 +HGNC:42691 INTS6-AS1 INTS6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 INTS6 antisense RNA 1 (non-protein coding) 2012-01-30 2012-08-15 2014-11-19 100507398 ENSG00000236778 OTTHUMG00000016944 uc058xef.1 AA397528 NR_103812 +HGNC:27334 INTS6L integrator complex subunit 6 like protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 FLJ41215 DDX26B DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B 2004-08-10 2016-01-07 2016-01-07 2016-10-05 203522 ENSG00000165359 OTTHUMG00000022484 uc004eyw.5 AK096544 NM_182540 CCDS35401 Q5JSJ4 MGI:2442593 RGD:1592872 +HGNC:41180 INTS6L-AS1 INTS6L antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq26.3 Xq26.3 DDX26B-AS1 "DDX26B antisense RNA 1 (non-protein coding)|DDX26B antisense RNA 1" 2011-08-10 2016-01-07 2016-01-07 2016-01-07 100874118 ENSG00000225235 OTTHUMG00000022483 uc033ewb.1 NR_046740 +HGNC:43921 INTS6P1 integrator complex subunit 6 pseudogene 1 pseudogene pseudogene Approved 5p13.1 05p13.1 2012-05-04 2012-05-04 285634 ENSG00000250492 OTTHUMG00000162069 NG_021845 PGOHUM00000235198 +HGNC:24484 INTS7 integrator complex subunit 7 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "DKFZP434B168|INT7" C1orf73 chromosome 1 open reading frame 73 2005-05-19 2006-03-15 2006-03-15 2014-11-18 25896 ENSG00000143493 OTTHUMG00000037119 uc001hiw.3 AK022509 NM_015434 "CCDS1501|CCDS55684|CCDS55683|CCDS55685" Q9NVH2 16239144 MGI:1924315 RGD:1308014 INTS7 611350 +HGNC:26048 INTS8 integrator complex subunit 8 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "FLJ20530|INT8|MGC131633" C8orf52 chromosome 8 open reading frame 52 2005-08-30 2006-03-15 2006-03-15 2014-11-19 55656 ENSG00000164941 OTTHUMG00000164695 uc003yhb.5 AK091278 NM_017864 CCDS34925 Q75QN2 16239144 MGI:1919906 RGD:1310592 INTS8 611351 +HGNC:25592 INTS9 integrator complex subunit 9 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "FLJ10871|CPSF2L|RC-74" 2007-07-31 2015-08-25 55756 ENSG00000104299 OTTHUMG00000164030 uc003xha.4 BC025267 NM_018250 "CCDS34873|CCDS55215|CCDS55216" Q9NV88 16239144 MGI:1098533 RGD:1311539 INTS9 611352 +HGNC:25548 INTS10 integrator complex subunit 10 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "FLJ10569|INT10" C8orf35 chromosome 8 open reading frame 35 2005-07-22 2006-03-15 2006-03-15 2014-11-19 55174 ENSG00000104613 OTTHUMG00000131065 uc003wzj.4 AK001431 NM_018142 CCDS6011 Q9NVR2 16239144 MGI:1918135 RGD:1304711 INTS10 611353 +HGNC:25067 INTS12 integrator complex subunit 12 protein-coding gene gene with protein product Approved 4q24 04q24 "SBBI22|INT12" hypothetical nuclear factor SBBI22 PHF22 PHD finger protein 22 PHD finger proteins 88 2005-05-05 2006-03-15 2006-03-15 2014-11-19 57117 ENSG00000138785 OTTHUMG00000131215 uc010ilr.4 NM_020395 CCDS3671 Q96CB8 16239144 MGI:1919043 RGD:1359136 INTS12 611355 +HGNC:29239 INTU inturned planar cell polarity protein protein-coding gene gene with protein product Approved 4q28.1 04q28.1 KIAA1284 "PDZK6|PDZD6" "PDZ domain containing 6|inturned planar cell polarity effector homolog (Drosophila)" PDZ domain containing 1220 2004-01-30 2006-10-24 2013-03-05 2016-10-05 27152 ENSG00000164066 OTTHUMG00000161202 uc003ifk.3 BC051698 XM_371707 CCDS34061 Q9ULD6 "10574462|21761479" MGI:2443752 RGD:1309446 INTU 610621 +HGNC:17870 INVS inversin protein-coding gene gene with protein product Approved 9q31.1 09q31.1 nephrocystin 2 NPHP2 nephronophthisis 2 (infantile) Ankyrin repeat domain containing 403 2002-06-11 2003-08-11 2016-10-05 27130 ENSG00000119509 OTTHUMG00000020364 uc004bap.3 AF039217 NM_014425 CCDS6746 Q9Y283 12872123 MGI:1335082 RGD:1563359 INVS 243305 122667 +HGNC:18360 IP6K1 inositol hexakisphosphate kinase 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 KIAA0263 IHPK1 inositol hexaphosphate kinase 1 2002-03-11 2008-12-22 2009-01-05 2009-01-05 9807 ENSG00000176095 OTTHUMG00000158197 uc003cxm.2 D87452 NM_153273 "CCDS33760|CCDS43092" Q92551 MGI:1351633 RGD:71025 IP6K1 606991 +HGNC:17313 IP6K2 inositol hexakisphosphate kinase 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 IHPK2 inositol hexaphosphate kinase 2 2002-01-04 2008-12-22 2009-01-05 2014-11-18 51447 ENSG00000068745 OTTHUMG00000133543 uc003cuq.4 AF177145 NM_016291 "CCDS2777|CCDS33752|CCDS54579|CCDS54580|CCDS54581" Q9UHH9 10574768 MGI:1923750 RGD:620529 IP6K2 606992 +HGNC:17269 IP6K3 inositol hexakisphosphate kinase 3 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 INSP6K3 IHPK3 inositol hexaphosphate kinase 3 2002-01-04 2008-12-22 2009-01-05 2014-11-19 117283 ENSG00000161896 OTTHUMG00000014531 uc003ofb.3 AF393812 NM_054111 CCDS34435 Q96PC2 11502751 MGI:3045325 RGD:1584104 IP6K3 606993 +HGNC:21204 IPCEF1 interaction protein for cytohesin exchange factors 1 protein-coding gene gene with protein product Approved 6q25.2 06q25.2 "PIP3-E|KIAA0403" phosphoinositide binding protein PIP3-E Pleckstrin homology domain containing 682 2009-02-27 2014-11-19 26034 ENSG00000074706 OTTHUMG00000015872 uc003qpx.4 AB007863 NM_001130699 "CCDS5245|CCDS47509" Q8WWN9 "11804589|19756519" MGI:2444159 RGD:735159 IPCEF1 +HGNC:20739 IPMK inositol polyphosphate multikinase protein-coding gene gene with protein product Approved 10q21.1 10q21.1 2004-02-05 2004-07-22 2015-12-04 253430 ENSG00000151151 OTTHUMG00000018268 uc001jkb.3 AF432853 NM_152230 CCDS7250 Q8NFU5 "12223481|12027805" MGI:1916968 RGD:620954 IPMK 609851 457568 2.7.1.151 +HGNC:39354 IPMKP1 inositol polyphosphate multikinase pseudogene 1 pseudogene pseudogene Approved 13q12.12 13q12.12 2010-11-29 2010-11-29 401730 ENSG00000226507 OTTHUMG00000016553 NG_011396 PGOHUM00000248329 +HGNC:19426 IPO4 importin 4 protein-coding gene gene with protein product Approved 14q12 14q12 "Imp4|FLJ23338" Importins 596 2003-03-10 2016-10-05 79711 ENSG00000196497 OTTHUMG00000028801 uc001wmv.2 AF411122 NM_024658 CCDS9616 Q8TEX9 11823430 MGI:1923001 RGD:1305206 IPO4 +HGNC:6402 IPO5 importin 5 protein-coding gene gene with protein product Approved 13q32.2 13q32.2 "IMB3|MGC2068|Pse1" "KPNB3|RANBP5" "karyopherin (importin) beta 3|RAN binding protein 5" Importins 596 1997-06-09 2008-04-15 2008-04-15 2014-11-19 3843 ENSG00000065150 OTTHUMG00000017244 uc010til.2 U72761 NM_002271 CCDS31999 O00410 "9114010|9271386|17005651" MGI:1917822 RGD:1308715 IPO5 602008 +HGNC:49687 IPO5P1 importin 5 pseudogene 1 pseudogene pseudogene Approved 19p12 19p12 2014-02-12 2014-02-12 100132815 ENSG00000269837 OTTHUMG00000183233 NR_103741 PGOHUM00000234262 +HGNC:9852 IPO7 importin 7 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 Imp7 RANBP7 RAN binding protein 7 Importins 596 1998-11-30 2003-03-14 2003-03-11 2016-10-05 10527 ENSG00000205339 OTTHUMG00000165753 uc001mho.4 AF098799 NM_006391 CCDS31425 O95373 9214382 MGI:2152414 RGD:1310849 IPO7 605586 +HGNC:39837 IPO7P1 importin 7 pseudogene 1 pseudogene pseudogene Approved Xp11.22 Xp11.22 2011-03-30 2014-11-19 100129708 ENSG00000232951 OTTHUMG00000021542 NG_022600 PGOHUM00000241299 +HGNC:39838 IPO7P2 importin 7 pseudogene 2 pseudogene pseudogene Approved 13q12.12 13q12.12 2011-03-30 2014-11-19 100128337 ENSG00000225674 OTTHUMG00000016575 NG_011413 PGOHUM00000248332 +HGNC:9853 IPO8 importin 8 protein-coding gene gene with protein product Approved 12p11.21 12p11.21 IMP8 RANBP8 RAN binding protein 8 Importins 596 1998-11-30 2003-03-14 2003-03-11 2014-11-18 10526 ENSG00000133704 OTTHUMG00000169172 uc001rjd.4 U77494 NM_006390 "CCDS8719|CCDS53773" O15397 9214382 MGI:2444611 IPO8 605600 +HGNC:41955 IPO8P1 importin 8 pseudogene 1 pseudogene pseudogene Approved 1q32.2 01q32.2 2011-05-23 2014-11-18 100418819 ENSG00000224668 OTTHUMG00000036450 NG_027038 +HGNC:19425 IPO9 importin 9 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "Imp9|FLJ10402" Importins 596 2003-03-10 2016-10-05 55705 ENSG00000198700 OTTHUMG00000035805 uc001gwz.4 AF410465 NM_018085 CCDS1415 Q96P70 "11823430|10574461" MGI:1918944 RGD:1310537 IPO9 +HGNC:40892 IPO9-AS1 IPO9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 IPO9 antisense RNA 1 (non-protein coding) 2012-02-24 2012-08-15 2014-11-19 100873949 ENSG00000231871 OTTHUMG00000035809 uc031vjy.2 BI916758 NR_046696 +HGNC:20628 IPO11 importin 11 protein-coding gene gene with protein product Approved 5q12.1 05q12.1 RanBP11 Importins 596 2003-03-10 2014-11-18 51194 ENSG00000086200 OTTHUMG00000154400 uc003jtc.4 AF111109 NM_016338 "CCDS34167|CCDS47217" Q9UI26 MGI:2442377 RGD:1311133 IPO11 610889 +HGNC:16853 IPO13 importin 13 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "IMP13|KIAA0724|RANBP13" Importins 596 2003-03-10 2014-11-19 9670 ENSG00000117408 OTTHUMG00000008297 uc001ckx.4 AB018267 NM_014652 CCDS503 O94829 "9872452|11447110" MGI:2385205 RGD:620071 IPO13 610411 +HGNC:6108 IPP intracisternal A particle-promoted polypeptide protein-coding gene gene with protein product Approved 1p34.1 01p34.1 KLHL27 kelch-like family member 27 "Kelch like|BTB domain containing" "617|861" 1992-05-08 2016-10-05 3652 ENSG00000197429 OTTHUMG00000008004 uc001cou.4 BC032544 NM_005897 "CCDS30702|CCDS44132" Q9Y573 "1905535|8432546" MGI:96581 RGD:1306299 IPP 147485 +HGNC:14645 IPPK inositol-pentakisphosphate 2-kinase protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "INSP5K2|FLJ13163|IP5K|IPK1" C9orf12 "chromosome 9 open reading frame 12|inositol 1,3,4,5,6-pentakisphosphate 2-kinase" 2001-02-27 2005-10-20 2015-11-27 2015-11-27 64768 ENSG00000127080 OTTHUMG00000020231 uc004asl.1 AK023225 NM_022755 CCDS6699 Q9H8X2 12084730 MGI:1922928 RGD:1311271 IPPK +HGNC:39390 IPPKP1 inositol 1,3,4,5,6-pentakisphosphate 2-kinase pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 2010-12-02 2010-12-02 100874419 ENSG00000225585 OTTHUMG00000016530 NG_032283 PGOHUM00000248321 +HGNC:6109 IPW imprinted in Prader-Willi syndrome (non-protein coding) non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 NCRNA00002 non-protein coding RNA 2 Long non-coding RNAs 788 1994-12-13 2008-08-14 2014-10-22 3653 U12897 NR_023915 "7849716|9601023" 601491 ipw +HGNC:26195 IQCA1 IQ motif containing with AAA domain 1 protein-coding gene gene with protein product Approved 2q37.2-q37.3 02q37.2-q37.3 "FLJ22527|DRC11" dynein regulatory complex subunit 11 IQCA IQ motif containing with AAA domain "AAA ATPases|Dynein regulatory complex" "413|981" 2004-09-01 2008-07-02 2008-07-02 2016-10-11 79781 ENSG00000132321 OTTHUMG00000153058 uc002vvz.3 AK026180 NM_024726 "CCDS46549|CCDS59441|CCDS74677" Q86XH1 23427265 MGI:1922168 RGD:1305311 IQCA1 +HGNC:41137 IQCA1-AS1 IQCA1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q37 02q37 2014-05-12 2014-11-19 107080627 ENSG00000232893 OTTHUMG00000153059 BF509914 +HGNC:22831 IQCA1L IQ motif containing with AAA domain 1 like protein-coding gene gene with protein product Approved 7q36.1 07q36.1 TCAG_9762 IQCA1P1 IQ motif containing with AAA domain 1 pseudogene 1 2009-01-23 2014-11-19 2014-11-19 2016-09-27 392843 ENSG00000278685 OTTHUMG00000156140 XM_006710196 CCDS78288 A6NCM1 MGI:3045319 RGD:1564789 +HGNC:28949 IQCB1 IQ motif containing B1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "KIAA0036|NPHP5|SLSN5" nephrocystin-5 IQ calmodulin-binding motif containing 1 2004-03-05 2004-09-02 2016-10-05 9657 ENSG00000173226 OTTHUMG00000128677 uc010hre.1 D25278 NM_014642 "CCDS33836|CCDS33837" Q15051 15723066 MGI:2443764 RGD:1310069 IQCB1 609237 122670 +HGNC:17727 IQCB2P IQ motif containing B2 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 dJ313I6.1 KIAA0036 pseudogene IQCB1P1 IQCB1 pseudogene 1 2004-11-25 2005-01-17 2014-11-19 340192 ENSG00000217539 OTTHUMG00000014501 NG_005320 PGOHUM00000243536 +HGNC:25545 IQCC IQ motif containing C protein-coding gene gene with protein product Approved 1p35.2 01p35.2 FLJ10547 2004-09-02 2016-10-05 55721 ENSG00000160051 OTTHUMG00000005739 uc001bum.3 AL049795 NM_018134 "CCDS355|CCDS53293" Q4KMZ1 MGI:2446212 RGD:1583461 IQCC +HGNC:25168 IQCD IQ motif containing D protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "DRC10|CFAP84" dynein regulatory complex subunit 10 Dynein regulatory complex 981 2004-09-02 2016-10-11 115811 ENSG00000166578 OTTHUMG00000169659 uc001tuu.4 BC013151 NM_138451 "CCDS9167|CCDS81743" Q96DY2 "23427265|24804578" MGI:1922982 RGD:1560757 IQCD +HGNC:29171 IQCE IQ motif containing E protein-coding gene gene with protein product Approved 7p22.3 07p22.3 KIAA1023 2004-09-02 2016-04-25 23288 ENSG00000106012 OTTHUMG00000152047 uc003smo.6 AL136792 NM_152558 "CCDS43542|CCDS47527|CCDS75559|CCDS75560" Q6IPM2 10470851 MGI:1921489 RGD:1311349 IQCE +HGNC:28607 IQCF1 IQ motif containing F1 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 MGC39725 2004-09-02 2016-10-05 132141 ENSG00000173389 OTTHUMG00000156908 uc003dbv.4 BC029595 NM_152397 CCDS2836 Q8N6M8 12477932 MGI:1921517 RGD:1565640 IQCF1 +HGNC:31815 IQCF2 IQ motif containing F2 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 2004-09-02 2016-10-05 389123 ENSG00000184345 OTTHUMG00000156914 uc003dbt.2 AK128883 NM_203424 CCDS2835 Q8IXL9 RGD:1565277 IQCF2 +HGNC:31816 IQCF3 IQ motif containing F3 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 2004-09-02 2016-10-05 401067 ENSG00000229972 OTTHUMG00000156910 uc062khs.1 AK057432 NM_001085479 CCDS46837 P0C7M6 IQCF3 +HGNC:35159 IQCF5 IQ motif containing F5 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 2008-10-16 2016-10-05 389124 ENSG00000214681 OTTHUMG00000156913 uc011bdx.2 XM_371643 CCDS46838 A8MTL0 MGI:1922720 RGD:1560754 IQCF5 +HGNC:41297 IQCF5-AS1 IQCF5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.2 03p21.2 IQCF5 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 101928999 ENSG00000235455 OTTHUMG00000156912 uc032rnu.1 NR_109984 +HGNC:35158 IQCF6 IQ motif containing F6 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 2008-10-16 2016-10-11 440956 ENSG00000214686 OTTHUMG00000187148 uc021wyv.1 XM_496643 CCDS54590 A8MYZ5 MGI:3781315 RGD:1562645 IQCF6 +HGNC:25251 IQCG IQ motif containing G protein-coding gene gene with protein product Approved 3q29 03q29 "DKFZp434B227|DRC9|CFAP122" dynein regulatory complex subunit 9 Dynein regulatory complex 981 2005-01-19 2014-11-19 84223 ENSG00000114473 OTTHUMG00000155408 uc003fyp.4 AL136889 NM_032263 "CCDS3331|CCDS82898" Q9H095 "11230166|23427265|24362311" MGI:1916957 RGD:1311606 IQCG 612477 +HGNC:25721 IQCH IQ motif containing H protein-coding gene gene with protein product Approved 15q23 15q23 FLJ12476 2005-10-24 2016-04-25 64799 ENSG00000103599 OTTHUMG00000133231 uc002aqo.3 AY014282 NM_022784 "CCDS10223|CCDS32273|CCDS61680|CCDS61681|CCDS76772" Q86VS3 12477932 MGI:1925500 RGD:1310670 IQCH 612523 +HGNC:44104 IQCH-AS1 IQCH antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q23 15q23 IQCH antisense RNA 1 (non-protein coding) 2012-06-22 2012-08-15 2012-10-12 100506686 ENSG00000259673 OTTHUMG00000172247 uc059kpr.1 NR_040051 +HGNC:32406 IQCJ IQ motif containing J protein-coding gene gene with protein product Approved 3q25.32 03q25.32 2006-01-16 2015-08-25 654502 ENSG00000214216 OTTHUMG00000166440 uc003fcp.3 "DQ309553|DQ309554" NM_001042705.1 "CCDS46946|CCDS46947|CCDS56290" Q1A5X6 17045569 MGI:3644166 IQCJ 611622 +HGNC:38842 IQCJ-SCHIP1 IQCJ-SCHIP1 readthrough other readthrough Approved 3q25.33 03q25.33 2010-10-11 2016-10-04 100505385 ENSG00000283154 OTTHUMG00000162426 uc003fcs.3 NM_001197113 "CCDS56289|CCDS56291" MGI:5439400 RGD:1309962 IQCJ-SCHIP1 +HGNC:41303 IQCJ-SCHIP1-AS1 IQCJ-SCHIP1 readthrough antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.33 03q25.33 IQCJ-SCHIP1 readthrough antisense RNA 1 (non-protein coding) 2011-09-16 2012-08-15 2014-11-19 100874433 ENSG00000241211 OTTHUMG00000158933 uc062pmg.1 NR_121669 +HGNC:28556 IQCK IQ motif containing K protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "MGC35048|FLJ36575" 2006-06-14 2014-11-19 124152 ENSG00000174628 OTTHUMG00000131453 uc002dgr.4 AF520569 NM_153208 CCDS10580 Q8N0W5 10493829 MGI:3612188 RGD:6502881 IQCK +HGNC:6110 IQGAP1 IQ motif containing GTPase activating protein 1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "p195|KIAA0051|SAR1|HUMORFA01" RasGAP-like with IQ motifs 1999-07-23 2014-11-19 8826 ENSG00000140575 OTTHUMG00000149832 uc002bpl.2 D29640 NM_003870 CCDS10362 P46940 "8051149|8670801" MGI:1352757 RGD:1311884 IQGAP1 603379 +HGNC:6111 IQGAP2 IQ motif containing GTPase activating protein 2 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 1999-07-23 2016-10-05 10788 ENSG00000145703 OTTHUMG00000162432 uc003kek.5 U51903 NM_006633 "CCDS34188|CCDS68897|CCDS68898|CCDS75262" Q13576 8756646 MGI:2449975 RGD:2321734 IQGAP2 605401 +HGNC:20669 IQGAP3 IQ motif containing GTPase activating protein 3 protein-coding gene gene with protein product Approved 1q22 01q22 2003-06-23 2016-10-05 128239 ENSG00000183856 OTTHUMG00000033114 uc001fpf.4 AY253300 NM_178229 CCDS1144 Q86VI3 MGI:3028642 RGD:1305951 IQGAP3 +HGNC:29112 IQSEC1 IQ motif and Sec7 domain 1 protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "KIAA0763|GEP100|BRAG2|ARF-GEP100" brefeldin A-resistant ARF-GEF2 2004-08-27 2015-09-02 9922 ENSG00000144711 OTTHUMG00000155398 uc003bxt.4 BC010267 NM_014869 "CCDS33703|CCDS74902" Q6DN90 "9872452|8619474" MGI:1196356 RGD:1596313 IQSEC1 610166 +HGNC:29059 IQSEC2 IQ motif and Sec7 domain 2 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 KIAA0522 MRX1 mental retardation, X-linked 1 (non-dysmorphic) X-linked mental retardation 103 2004-08-27 2016-10-05 23096 ENSG00000124313 OTTHUMG00000021608 uc004dsc.4 AB011094 XM_291345 "CCDS35298|CCDS48130" Q5JU85 "9628581|20473311" MGI:3528396 RGD:1596452 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IQSEC2 IQSEC2 300522 232248 +HGNC:29193 IQSEC3 IQ motif and Sec7 domain 3 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "KIAA1110|MGC30156" 2004-08-27 2015-08-25 440073 ENSG00000120645 OTTHUMG00000167975 uc001qhu.2 AB029033 XM_495902 "CCDS31725|CCDS53728" Q9UPP2 10470851 MGI:2677208 RGD:1593191 IQSEC3 612118 +HGNC:49848 IQSEC3P1 IQ motif and Sec7 domain 3 pseudogene 1 pseudogene pseudogene Approved 12p13.33 12p13.33 2014-03-18 2014-03-18 100132450 ENSG00000256902 OTTHUMG00000168141 NG_021681 PGOHUM00000239294 +HGNC:49849 IQSEC3P2 IQ motif and Sec7 domain 3 pseudogene 2 pseudogene pseudogene Approved 12p13.2 12p13.2 2014-03-18 2014-03-18 100130073 NG_021705 PGOHUM00000239674 +HGNC:49850 IQSEC3P3 IQ motif and Sec7 domain 3 pseudogene 3 pseudogene pseudogene Approved 20q13.33 20q13.33 2014-03-18 2014-03-18 728056 NG_021984 PGOHUM00000247575 +HGNC:21995 IQUB IQ motif and ubiquitin domain containing protein-coding gene gene with protein product Approved 7q31.32 07q31.32 FLJ35834 2007-01-22 2014-11-19 154865 ENSG00000164675 OTTHUMG00000157347 uc003vko.4 AK093153 NM_178827 CCDS5787 Q8NA54 MGI:3041159 RGD:4145674 IQUB +HGNC:50365 IRAIN IGF1R antisense imprinted non-protein coding RNA non-coding RNA RNA, long non-coding Approved 15q26.3 15q26.3 IGF1R-AS IGF1R antisense RNA 2014-08-07 2016-10-12 104472848 NR_126453 25092925 LRG_1064|http://www.lrg-sequence.org/LRG/LRG_1064 +HGNC:6112 IRAK1 interleukin 1 receptor associated kinase 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "IRAK|pelle" 1998-06-22 2015-11-11 2015-11-11 3654 ENSG00000184216 OTTHUMG00000024228 uc004fjs.2 L76191 XM_005274668 "CCDS14740|CCDS35443|CCDS35444" P51617 "9374458|8599092" MGI:107420 RGD:1563841 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IRAK1 IRAK1 300283 369336 objectId:2042 +HGNC:17368 IRAK1BP1 interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "AIP70|SIMPL" 2003-07-17 2015-11-11 2016-01-15 134728 ENSG00000146243 OTTHUMG00000015070 uc003pim.6 AI478629 XM_059729 CCDS34488 Q5VVH5 11096118 MGI:1929475 RGD:1305012 IRAK1BP1 615375 +HGNC:6113 IRAK2 interleukin 1 receptor associated kinase 2 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 1998-06-22 2015-11-11 2016-10-05 3656 ENSG00000134070 OTTHUMG00000155358 uc003bve.2 AF026273 NM_001570 CCDS33697 O43187 9374458 MGI:2429603 RGD:1309584 IRAK2 603304 objectId:2043 +HGNC:17020 IRAK3 interleukin 1 receptor associated kinase 3 protein-coding gene gene with protein product Approved 12q14.3 12q14.3 IRAK-M interleukin-1 receptor-associated kinase 3 2002-07-17 2015-11-11 2016-10-11 11213 ENSG00000090376 OTTHUMG00000169002 uc001sth.4 AF113136 NM_001142523 "CCDS8975|CCDS44937" Q9Y616 10383454 MGI:1921164 RGD:1308846 IRAK3 604459 objectId:2044 +HGNC:17967 IRAK4 interleukin 1 receptor associated kinase 4 protein-coding gene gene with protein product Approved 12q12 12q12 NY-REN-64 2002-09-27 2015-11-11 2016-10-12 51135 ENSG00000198001 OTTHUMG00000169425 uc001rnt.4 AF155118 XM_011538431 "CCDS8744|CCDS44862" Q9NWZ3 "3772297|10508479" MGI:2182474 RGD:1305303 "IRAK4base: Mutation registry for IRAK4 deficiency|http://structure.bmc.lu.se/idbase/IRAK4base/|LRG_75|http://www.lrg-sequence.org/LRG/LRG_75" IRAK4 606883 122674 objectId:2045 +HGNC:6115 IREB2 iron responsive element binding protein 2 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 IRP2 1991-02-20 2015-11-12 2015-11-12 3658 ENSG00000136381 OTTHUMG00000143861 uc002bdr.3 M58511 NM_004136 "CCDS10302|CCDS81912" P48200 2172968 MGI:1928268 RGD:621539 IREB2 147582 +HGNC:6116 IRF1 interferon regulatory factor 1 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 MAR interferon regulatory factor-1 1991-05-09 2016-10-05 3659 ENSG00000125347 OTTHUMG00000059497 uc003kxa.3 NM_002198 CCDS4155 P10914 "2726461|1680796" MGI:96590 RGD:2920 IRF1 147575 +HGNC:6117 IRF2 interferon regulatory factor 2 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 1991-05-09 2016-01-15 3660 ENSG00000168310 OTTHUMG00000160606 uc003iwf.5 NM_002199 CCDS3835 P14316 2475256 MGI:96591 RGD:1304922 IRF2 147576 +HGNC:21728 IRF2BP1 interferon regulatory factor 2 binding protein 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "DKFZP434M154|IRF-2BP1" 2003-07-21 2014-11-19 26145 ENSG00000170604 OTTHUMG00000182485 uc002pds.2 AY278022 NM_015649 CCDS12678 Q8IU81 12799427 MGI:2442159 RGD:1308312 IRF2BP1 615331 +HGNC:21729 IRF2BP2 interferon regulatory factor 2 binding protein 2 protein-coding gene gene with protein product Approved 1q42.3 01q42.3 IRF-2BP2 2003-07-21 2015-08-25 359948 ENSG00000168264 OTTHUMG00000037981 uc001hwg.3 AY278023 NM_182972 "CCDS1602|CCDS41475" Q7Z5L9 12799427 MGI:2443921 RGD:1589517 IRF2BP2 615332 +HGNC:14282 IRF2BPL interferon regulatory factor 2 binding protein like protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "EAP1|KIAA1865" enhanced at puberty 1 C14orf4 "chromosome 14 open reading frame 4|interferon regulatory factor 2 binding protein-like" 2000-12-21 2011-02-23 2016-03-24 2016-03-24 64207 ENSG00000119669 OTTHUMG00000171578 uc001xsy.4 AJ277365 NM_024496 CCDS9854 Q9H1B7 "11095982|17627301" MGI:2442463 RGD:1310994 IRF2BPL 611720 +HGNC:6118 IRF3 interferon regulatory factor 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 1996-11-13 2016-01-15 3661 ENSG00000126456 OTTHUMG00000183287 uc002pou.4 NM_001571 "CCDS12775|CCDS56099|CCDS59407|CCDS59408|CCDS59409" Q14653 8524823 MGI:1859179 RGD:1549774 IRF3 603734 +HGNC:6119 IRF4 interferon regulatory factor 4 protein-coding gene gene with protein product Approved 6p25.3 06p25.3 LSIRF MUM1 1996-05-31 2015-11-18 3662 ENSG00000137265 OTTHUMG00000016294 uc003msz.5 U52682 XM_006715090 CCDS4469 Q15306 "8921401|18417578" MGI:1096873 RGD:1308050 IRF4 601900 +HGNC:6120 IRF5 interferon regulatory factor 5 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 1996-05-31 2016-10-05 3663 ENSG00000128604 OTTHUMG00000158410 uc003voh.4 NM_001098627 "CCDS5808|CCDS43645|CCDS56512" Q13568 MGI:1350924 RGD:1310447 IRF5 607218 239872 +HGNC:41981 IRF5P1 interferon regulatory factor 5 pseudogene 1 pseudogene pseudogene Approved 8q22.1 08q22.1 2011-05-24 2011-05-24 100420406 ENSG00000251347 OTTHUMG00000160421 NG_026120 PGOHUM00000249745 +HGNC:6121 IRF6 interferon regulatory factor 6 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "OFC6|VWS1" "VWS|LPS" Van der Woude syndrome 1997-10-16 2016-10-05 3664 ENSG00000117595 OTTHUMG00000036521 uc001hhq.3 AL022398 NM_006147 "CCDS1492|CCDS55681" O14896 12219090 MGI:1859211 RGD:1309645 IRF6 607199 122684 +HGNC:6122 IRF7 interferon regulatory factor 7 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 1996-11-13 2014-11-19 3665 ENSG00000185507 OTTHUMG00000132019 uc057xis.1 U53830 NM_001572 "CCDS7703|CCDS7704|CCDS7705" Q92985 MGI:1859212 RGD:1307828 IRF7 605047 +HGNC:5358 IRF8 interferon regulatory factor 8 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 "IRF-8|ICSBP" ICSBP1 interferon consensus sequence binding protein 1 1993-09-09 2004-11-12 2004-11-12 2016-10-12 3394 ENSG00000140968 OTTHUMG00000137648 uc002fjh.4 M91196 NM_002163 CCDS10956 Q02556 "1460054|11997525" MGI:96395 RGD:1312024 LRG_294|http://www.lrg-sequence.org/LRG/LRG_294 IRF8 601565 315478 +HGNC:6131 IRF9 interferon regulatory factor 9 protein-coding gene gene with protein product Approved 14q12 14q12 ISGF3G "interferon-stimulated transcription factor 3, gamma (48kD)|interferon-stimulated transcription factor 3, gamma 48kDa" 1999-06-21 2007-07-06 2007-07-06 2016-10-05 10379 ENSG00000213928 OTTHUMG00000028799 uc058zzb.1 M87503 NM_006084 CCDS9615 Q00978 "1630447|10199920" MGI:107587 RGD:1308766 IRF9 147574 +HGNC:28835 IRGC immunity related GTPase cinema protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "Iigp5|CINEMA" IRGC1 immunity-related GTPase family, cinema 1 2005-02-21 2005-10-31 2016-04-28 2016-10-05 56269 ENSG00000124449 OTTHUMG00000154587 uc002oxh.4 BC066939 NM_019612 CCDS12629 Q6NXR0 12477932 MGI:2685948 RGD:1311107 IRGC +HGNC:29597 IRGM immunity related GTPase M protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "LRG47|LRG-47|IFI1" IRGM1 immunity-related GTPase family, M1 2005-02-21 2005-03-23 2016-07-11 2016-07-11 345611 ENSG00000237693 OTTHUMG00000163647 uc010jhk.3 BC038539 NM_001145805 CCDS47313 A1A4Y4 "7561525|14576437" MGI:1926262 RGD:1305163 IRGM 608212 302996 +HGNC:24868 IRGQ immunity related GTPase Q protein-coding gene gene with protein product Approved 19q13.31 19q13.31 FKSG27 IRGQ1 immunity-related GTPase family, Q1 2005-02-21 2005-10-31 2016-06-13 2016-06-13 126298 ENSG00000167378 OTTHUMG00000182701 uc010eiv.3 AF322648 NM_001007561 CCDS33040 Q8WZA9 16277747 MGI:2667176 RGD:1309409 IRGQ +HGNC:6125 IRS1 insulin receptor substrate 1 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 HIRS-1 Pleckstrin homology domain containing 682 1992-08-24 2016-10-05 3667 ENSG00000169047 OTTHUMG00000133179 uc002voh.5 NM_005544 CCDS2463 P35568 1648180 MGI:99454 RGD:2922 IRS1 147545 +HGNC:6126 IRS2 insulin receptor substrate 2 protein-coding gene gene with protein product Approved 13q34 13q34 Pleckstrin homology domain containing 682 1998-11-24 2014-11-19 8660 ENSG00000185950 OTTHUMG00000017338 uc001vqv.4 AB000732 NM_003749 CCDS9510 Q9Y4H2 9312143 MGI:109334 RGD:69316 IRS2 600797 +HGNC:6127 IRS3P insulin receptor substrate 3, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 IRS3L insulin receptor substrate 3-like 1998-06-03 2010-10-19 2010-10-19 2016-10-11 442338 ENSG00000184414 OTTHUMG00000156030 NG_005538 "9799793|12488959" MGI:1194882 +HGNC:6128 IRS4 insulin receptor substrate 4 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "PY160|IRS-4" 1998-11-24 2014-11-19 8471 ENSG00000133124 OTTHUMG00000022181 uc004eoc.3 AF007567 NM_003604 CCDS14544 O14654 "9261155|9553137" MGI:1338009 RGD:69317 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=IRS4 IRS4 300904 +HGNC:14358 IRX1 iroquois homeobox 1 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 IRX-5 TALE class homeoboxes and pseudogenes 526 2001-02-27 2007-07-13 2014-11-19 79192 ENSG00000170549 OTTHUMG00000161632 uc003jde.3 U90307 NM_024337 CCDS34132 P78414 MGI:1197515 RGD:1309060 IRX1 606197 8446 +HGNC:33315 IRX1P1 iroquois homeobox 1 pseudogene 1 pseudogene pseudogene Approved 13q12.12 13q12.12 TALE class homeoboxes and pseudogenes 526 2007-02-07 2011-06-20 646390 ENSG00000231417 OTTHUMG00000016590 NG_009487 8591 +HGNC:14359 IRX2 iroquois homeobox 2 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 TALE class homeoboxes and pseudogenes 526 2001-07-20 2007-07-13 2015-08-25 153572 ENSG00000170561 OTTHUMG00000090377 uc003jda.4 AF319967 XR_001742016 CCDS3868 Q9BZI1 11435706 MGI:1197526 RGD:1309834 IRX2 606198 8447 460697 +HGNC:14360 IRX3 iroquois homeobox 3 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 IRX-1 TALE class homeoboxes and pseudogenes 526 2001-02-27 2007-07-13 2015-08-25 79191 ENSG00000177508 OTTHUMG00000133200 uc002eht.2 U90308 XM_005256139 CCDS10750 P78415 MGI:1197522 RGD:1307424 IRX3 612985 8410 +HGNC:6129 IRX4 iroquois homeobox 4 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 iroquois homeobox protein 4 TALE class homeoboxes and pseudogenes 526 2000-06-09 2007-07-13 2014-11-19 50805 ENSG00000113430 OTTHUMG00000090411 uc031sir.2 AF124733 NM_016358 "CCDS3867|CCDS75225" P78413 10625552 MGI:1355275 RGD:1309309 IRX4 606199 8448 +HGNC:33316 IRX4P1 iroquois homeobox 4 pseudogene 1 pseudogene pseudogene Approved 18p11.22 18p11.22 TALE class homeoboxes and pseudogenes 526 2007-02-07 2015-10-08 1973146 8592 +HGNC:14361 IRX5 iroquois homeobox 5 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 IRX-2a TALE class homeoboxes and pseudogenes 526 2001-02-27 2007-07-13 2015-08-25 10265 ENSG00000176842 OTTHUMG00000133201 uc002ehv.4 U90309 NM_005853 "CCDS10751|CCDS58462" P78411 MGI:1859086 RGD:1565518 IRX5 606195 8449 317747 +HGNC:14675 IRX6 iroquois homeobox 6 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 IRX-3 IRX7 "iroquois homeobox protein 7|iroquois homeobox protein 6" TALE class homeoboxes and pseudogenes 526 2001-02-27 2003-01-10 2007-07-13 2014-11-19 79190 ENSG00000159387 OTTHUMG00000172239 uc002ehy.4 AF319966 NM_024335 CCDS32449 P78412 MGI:1927642 RGD:1564830 IRX6 606196 8450 +HGNC:28660 ISCA1 iron-sulfur cluster assembly 1 protein-coding gene gene with protein product Approved 9q21.33 09q21.33 "MGC4276|ISA1|hIscA" HBLD2 "HESB like domain containing 2|iron-sulfur cluster assembly 1 homolog (S. cerevisiae)" 2004-01-05 2007-01-18 2013-08-06 2016-10-05 81689 ENSG00000135070 OTTHUMG00000020135 uc004aop.4 AF038186 NM_030940 CCDS35056 Q9BUE6 "15262227|22323289" MGI:1916296 RGD:727792 ISCA1 611006 +HGNC:33263 ISCA1P1 iron-sulfur cluster assembly 1 pseudogene 1 pseudogene pseudogene Approved 5q12.1 05q12.1 ISCA1L "iron-sulfur cluster assembly 1 homolog (S. cerevisiae)-like|iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 1" 2007-01-18 2010-03-19 2013-08-06 2014-11-18 389293 ENSG00000217416 OTTHUMG00000153236 NG_021247 PGOHUM00000235241 +HGNC:38023 ISCA1P2 iron-sulfur cluster assembly 1 pseudogene 2 pseudogene pseudogene Approved 1q42.13 01q42.13 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 2 2010-03-23 2013-08-06 2014-11-18 100288517 ENSG00000229840 OTTHUMG00000037628 NG_022828 PGOHUM00000245247 +HGNC:38024 ISCA1P3 iron-sulfur cluster assembly 1 pseudogene 3 pseudogene pseudogene Approved 17q22 17q22 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 3 2010-03-23 2013-08-06 2014-11-18 100131092 ENSG00000261965 OTTHUMG00000177813 NG_022956 PGOHUM00000237440 +HGNC:38025 ISCA1P4 iron-sulfur cluster assembly 1 pseudogene 4 pseudogene pseudogene Approved 15q15.1 15q15.1 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 4 2010-03-23 2013-08-06 2014-11-18 100128012 ENSG00000259405 OTTHUMG00000172512 NG_022952 PGOHUM00000246758 +HGNC:38026 ISCA1P5 iron-sulfur cluster assembly 1 pseudogene 5 pseudogene pseudogene Approved 19p13.11 19p13.11 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 5 2010-03-23 2013-08-06 2014-11-18 100288250 NG_023026 PGOHUM00000234548 +HGNC:38027 ISCA1P6 iron-sulfur cluster assembly 1 pseudogene 6 pseudogene pseudogene Approved 2q14.3 02q14.3 iron-sulfur cluster assembly 1 homolog (S. cerevisiae) pseudogene 6 2010-03-23 2013-08-06 2014-11-19 100130549 ENSG00000227653 OTTHUMG00000153415 NG_023024 PGOHUM00000240287 +HGNC:19857 ISCA2 iron-sulfur cluster assembly 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 ISA2 HBLD1 "HesB like domain containing 1|iron-sulfur cluster assembly 2 homolog (S. cerevisiae)" 2002-11-27 2007-01-18 2013-08-06 2016-10-11 122961 ENSG00000165898 OTTHUMG00000171214 uc001xpz.4 NM_194279 "CCDS32122|CCDS61504" Q86U28 22323289 MGI:1921566 RGD:1563216 ISCA2 615317 460630 +HGNC:38022 ISCA2P1 iron-sulfur cluster assembly 2 pseudogene 1 pseudogene pseudogene Approved 22q12.1 22q12.1 iron-sulfur cluster assembly 2 homolog (S. cerevisiae) pseudogene 1 2010-03-23 2013-08-06 2014-11-18 100287193 ENSG00000226912 OTTHUMG00000150978 NG_029633 PGOHUM00000246300 +HGNC:29882 ISCU iron-sulfur cluster assembly enzyme protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "ISU2|hnifU|IscU" NIFUN "NifU-like N-terminal domain containing|IscU iron-sulfur cluster scaffold homolog (E. coli)|iron-sulfur cluster scaffold homolog (E. coli)" 2005-01-05 2006-10-24 2013-08-05 2016-10-05 23479 ENSG00000136003 OTTHUMG00000168420 uc010sxc.3 U47101 NM_014301 "CCDS9118|CCDS44966|CCDS73518|CCDS76597" Q9H1K1 "8875867|11060020" MGI:1913633 RGD:1309562 ISCU 611911 168093 +HGNC:38021 ISCUP1 iron-sulfur cluster assembly enzyme pseudogene 1 pseudogene pseudogene Approved 1q24.2 01q24.2 iron-sulfur cluster scaffold homolog (E. coli) pseudogene 1 2010-03-23 2013-08-06 2014-11-18 100462833 ENSG00000238051 OTTHUMG00000035970 NG_022742 PGOHUM00000244328 +HGNC:4053 ISG15 ISG15 ubiquitin-like modifier protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "IFI15|UCRP" G1P2 interferon, alpha-inducible protein (clone IFI-15K) 1990-10-16 2006-04-28 2006-04-28 2015-08-25 9636 ENSG00000187608 OTTHUMG00000040777 uc001acj.5 BC009507 NM_005101 CCDS6 P05161 3087979 MGI:1855694 RGD:1310312 ISG15 147571 315470 +HGNC:6130 ISG20 interferon stimulated exonuclease gene 20 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "HEM45|CD25" interferon stimulated exonuclease gene 20kDa Exonucleases 544 1998-01-30 2016-06-01 2016-10-05 3669 ENSG00000172183 OTTHUMG00000148679 uc059mxq.1 X89773 NM_002201 CCDS10345 Q96AZ6 "9235947|9605874" MGI:1928895 RGD:1306407 ISG20 604533 +HGNC:25745 ISG20L2 interferon stimulated exonuclease gene 20 like 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 FLJ12671 interferon stimulated exonuclease gene 20kDa-like 2 Exonucleases 544 2005-06-30 2016-06-01 2016-06-01 81875 ENSG00000143319 OTTHUMG00000041301 uc001fps.2 AK095697 NM_030980 CCDS1153 Q9H9L3 18065403 MGI:2140076 RGD:1359413 ISG20L2 611930 +HGNC:6132 ISL1 ISL LIM homeobox 1 protein-coding gene gene with protein product Approved 5q11.1 05q11.1 "Isl-1|ISLET1" ISL1 transcription factor, LIM/homeodomain, (islet-1) LIM class homeoboxes 522 1994-12-13 2007-07-13 2016-10-05 3670 ENSG00000016082 OTTHUMG00000162281 uc003jor.4 BC031213 NM_002202 CCDS43314 P61371 7912209 MGI:101791 RGD:61957 ISL1 600366 8451 431237 +HGNC:18524 ISL2 ISL LIM homeobox 2 protein-coding gene gene with protein product Approved 15q24.3 15q24.3 FLJ10160 ISL2 transcription factor, LIM/homeodomain, (islet-2) LIM class homeoboxes 522 2002-04-29 2007-07-13 2015-09-02 64843 ENSG00000159556 OTTHUMG00000143723 uc002bbw.2 AK001022 XM_017022505 CCDS10290 Q96A47 MGI:109156 RGD:621849 ISL2 609481 8534 +HGNC:6133 ISLR immunoglobulin superfamily containing leucine rich repeat protein-coding gene gene with protein product Approved 15q24.1 15q24.1 HsT17563 I-set domain containing 593 1997-07-11 2016-06-06 2016-10-05 3671 ENSG00000129009 OTTHUMG00000137623 uc002axg.2 AB003184 NM_005545 CCDS10260 O14498 9325048 MGI:1349645 RGD:1596359 ISLR 602059 +HGNC:29286 ISLR2 immunoglobulin superfamily containing leucine rich repeat 2 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 KIAA1465 Immunoglobulin like domain containing 594 2006-02-16 2016-06-06 2016-06-06 57611 ENSG00000167178 OTTHUMG00000137624 uc002axd.3 NM_020851 CCDS10259 Q6UXK2 "10819331|12975309" MGI:2444277 RGD:6497037 ISLR2 614179 +HGNC:16213 ISM1 isthmin 1 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 bA149I18.1 C20orf82 "chromosome 20 open reading frame 82|isthmin 1 homolog (zebrafish)|isthmin 1, angiogenesis inhibitor" 2001-07-17 2008-12-23 2016-08-10 2016-08-10 140862 ENSG00000101230 uc010gce.2 AL133463 XM_017027680 CCDS46579 B1AKI9 "19874420|25952901" MGI:2442963 RGD:1562551 ISM1 615793 +HGNC:44313 ISM1-AS1 ISM1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p12.1 20p12.1 ISM1 antisense RNA 1 (non-protein coding) 2012-08-09 2012-08-15 2012-10-12 100505536 ENSG00000226263 OTTHUMG00000031900 uc002wof.3 "BC038745|BX092222|DB453950" NR_040043 +HGNC:23176 ISM2 isthmin 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "FLJ32147|TAIL1" thrombospondin and AMOP containing isthmin-like 1 THSD3 "thrombospondin, type I domain-containing 3|thrombospondin, type I, domain containing 3|isthmin 2 homolog (zebrafish)" 2003-09-29 2008-12-23 2013-05-15 2014-11-19 145501 ENSG00000100593 OTTHUMG00000158563 uc001xtz.4 AK056709 NM_182509 "CCDS9864|CCDS45143" Q6H9L7 15194193 MGI:2685110 RGD:1589343 ISM2 612684 +HGNC:24254 ISOC1 isochorismatase domain containing 1 protein-coding gene gene with protein product Approved 5q23.3 05q23.3 CGI-111 2005-02-07 2016-10-05 51015 ENSG00000066583 OTTHUMG00000163144 uc003kva.4 AF151869 NM_016048 CCDS43357 Q96CN7 "10810093|18566572" MGI:1913557 RGD:1307632 ISOC1 +HGNC:26278 ISOC2 isochorismatase domain containing 2 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 FLJ23469 2005-02-07 2015-09-02 79763 ENSG00000063241 OTTHUMG00000180830 uc002qla.4 AK027122 NM_024710 "CCDS12925|CCDS46194|CCDS46195" Q96AB3 17658461 "MGI:1914691|MGI:3609243" RGD:1309062 ISOC2 612928 +HGNC:37276 ISPD isoprenoid synthase domain containing protein-coding gene gene with protein product Approved 7p21.2 07p21.2 "hCG_1745121|IspD|Nip" "notch1-induced protein|4-diphosphocytidyl-2C-methyl-D-erythritol synthase homolog (Arabidopsis)" 2009-10-02 2016-06-10 729920 ENSG00000214960 OTTHUMG00000152447 uc010ktx.2 AK124805 NM_001101426 A4D126 11181995 MGI:1923097 RGD:1359368 ISPD 614631 302938 +HGNC:48962 ISPD-AS1 ISPD antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p21.2 07p21.2 2013-07-23 2013-07-23 100506025 ENSG00000229688 OTTHUMG00000152466 NR_038946 +HGNC:28977 IST1 IST1, ESCRT-III associated factor protein-coding gene gene with protein product Approved 16q22.2 16q22.2 IST1, endosomal sorting complex required for transport-III component KIAA0174 "KIAA0174|increased sodium tolerance 1 homolog (yeast)" ESCRT-III associated factors 1119 2005-07-14 2011-08-18 2016-02-23 2016-02-23 9798 ENSG00000182149 OTTHUMG00000137597 uc059wws.1 BC004359 NM_014761 "CCDS10905|CCDS59271|CCDS59272|CCDS59273|CCDS59274" P53990 "8724849|19129480" MGI:1919205 RGD:1307799 616434 +HGNC:28084 ISX intestine specific homeobox protein-coding gene gene with protein product Approved 22q12.3 22q12.3 RAXLX intestine-specific homeobox PRD class homeoboxes and pseudogenes 521 2006-08-08 2016-01-18 2016-01-18 91464 ENSG00000175329 OTTHUMG00000150962 uc003anj.4 AK025181 NM_001008494 CCDS33640 Q2M1V0 MGI:1918847 RGD:1592776 ISX 612019 8378 +HGNC:41188 ISX-AS1 ISX antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q12.3 22q12.3 2014-06-05 2014-11-18 101926957 ENSG00000227895 OTTHUMG00000150934 XR_001755509 +HGNC:29201 ISY1 ISY1 splicing factor homolog protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "KIAA1160|fSAP33" functional spliceosome-associated protein 33 ISY1 splicing factor homolog (S. cerevisiae) 2007-01-18 2015-07-03 2015-07-03 57461 ENSG00000240682 OTTHUMG00000137365 uc003elp.3 NM_020701 "CCDS43149|CCDS56277" Q9ULR0 16103217 MGI:1923310 RGD:1307688 ISY1 612764 +HGNC:42969 ISY1-RAB43 ISY1-RAB43 readthrough other readthrough Approved 3q21.3 03q21.3 2011-09-27 2011-09-27 2013-01-23 100534599 ENSG00000261796 OTTHUMG00000177122 uc003elo.3 NM_001204890 CCDS56276 MGI:1923310 +HGNC:29821 ISYNA1 inositol-3-phosphate synthase 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "Ino1|INOS|IPS" myo-inositol 1-phosphate synthase 2008-09-15 2014-11-19 51477 ENSG00000105655 OTTHUMG00000179027 uc002njd.2 NM_016368 "CCDS12379|CCDS54234|CCDS62603" Q9NPH2 "15024000|12941308" MGI:1919030 RGD:1359423 ISYNA1 611670 5.5.1.4 +HGNC:13890 ITCH itchy E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 20q11.22 20q11.22 AIP4 "itchy (mouse homolog) E3 ubiquitin protein ligase|itchy E3 ubiquitin protein ligase homolog (mouse)" C2 domain containing 823 2001-04-27 2012-02-23 2016-10-12 83737 ENSG00000078747 OTTHUMG00000032300 uc002xak.3 AF095745 NM_031483 "CCDS13234|CCDS58768|CCDS58769" Q96J02 11318614 MGI:1202301 RGD:1359556 LRG_354|http://www.lrg-sequence.org/LRG/LRG_354 ITCH 606409 232245 +HGNC:40659 ITCH-AS1 ITCH antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q11.22 20q11.22 ITCH antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 106480737 ENSG00000236388 OTTHUMG00000032298 uc061wis.1 +HGNC:41397 ITCH-IT1 ITCH intronic transcript 1 non-coding RNA RNA, long non-coding Approved 20q11.22 20q11.22 ITCH intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874302 ENSG00000231795 OTTHUMG00000046196 uc061wiu.1 +HGNC:30697 ITFG1 integrin alpha FG-GAP repeat containing 1 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "CDA08|TIP|LNKN-1" "T cell immunomodulatory protein|LINKIN" 2006-03-06 2015-08-12 81533 ENSG00000129636 OTTHUMG00000133103 uc002eet.4 AF503339 NM_030790 "CCDS10728|CCDS76862" Q8TB96 "12598909|25437307" MGI:106419 RGD:619898 ITFG1 611803 +HGNC:51383 ITFG1-AS1 ITFG1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16q12.1 16q12.1 2014-10-23 2014-10-23 101927102 ENSG00000260281 OTTHUMG00000175527 "BE551587|BI462694|AW303619" NR_110903 +HGNC:30879 ITFG2 integrin alpha FG-GAP repeat containing 2 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 MDS028 2006-03-06 2006-07-25 2014-11-19 55846 ENSG00000111203 OTTHUMG00000130617 uc001qlb.3 AF220048 NM_018463 CCDS8513 Q969R8 12477932 MGI:1915450 RGD:1311944 ITFG2 +HGNC:6134 ITGA1 integrin subunit alpha 1 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "VLA1|CD49a" integrin, alpha 1 "CD molecules|Integrin alpha subunits" "471|1160" 1992-02-27 2015-12-15 2016-10-05 3672 ENSG00000213949 OTTHUMG00000131163 uc003jou.4 X68742 NM_181501 CCDS3955 P56199 "8428973|11937138" MGI:96599 RGD:2923 ITGA1 192968 objectId:2437 CD49a +HGNC:6137 ITGA2 integrin subunit alpha 2 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 CD49b alpha 2 subunit of VLA-2 receptor CD49B integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor) "CD molecules|Integrin alpha subunits" "471|1160" 1991-08-06 2015-12-15 2016-10-12 3673 ENSG00000164171 OTTHUMG00000131165 uc003joy.3 NM_002203 CCDS3957 P17301 MGI:96600 RGD:621632 LRG_1001|http://www.lrg-sequence.org/LRG/LRG_1001 ITGA2 192974 328915 objectId:2440 CD49b +HGNC:6138 ITGA2B integrin subunit alpha 2b protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "CD41B|CD41|PPP1R93" "protein phosphatase 1, regulatory subunit 93|platelet glycoprotein IIb of IIb/IIIa complex" GP2B "integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)|integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41)" "CD molecules|Protein phosphatase 1 regulatory subunits|Integrin alpha subunits" "471|694|1160" 1986-01-01 2015-12-15 2016-10-12 3674 ENSG00000005961 OTTHUMG00000177935 uc002igt.2 XM_011524749 CCDS32665 P08514 MGI:96601 RGD:1596428 LRG_479|http://www.lrg-sequence.org/LRG/LRG_479 ITGA2B 607759 122690 objectId:2441 CD41 +HGNC:6139 ITGA3 integrin subunit alpha 3 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "CD49c|VLA3a|VCA-2|GAP-B3" "alpha 3 subunit of VLA-3 receptor|antigen CD49C" MSK18 "antigen identified by monoclonal antibody J143|integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)" "CD molecules|Integrin alpha subunits" "471|1160" 1992-02-27 2015-12-15 2015-12-15 3675 ENSG00000005884 OTTHUMG00000161890 uc010dbl.4 M59911 NM_005501 CCDS11558 P26006 "1655803|9704023" MGI:96602 RGD:1310333 ITGA3 605025 311039 objectId:2442 CD49c +HGNC:6140 ITGA4 integrin subunit alpha 4 protein-coding gene gene with protein product Approved 2q31.3 02q31.3 CD49d "antigen CD49D|alpha 4 subunit of VLA-4 receptor" CD49D integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) "CD molecules|Integrin alpha subunits" "471|1160" 1991-08-06 2015-12-15 2016-10-05 3676 ENSG00000115232 OTTHUMG00000154212 uc002unu.4 NM_000885 "CCDS42788|CCDS82540" P13612 1537388 MGI:96603 RGD:1593249 ITGA4 192975 objectId:2443 CD49d +HGNC:6141 ITGA5 integrin subunit alpha 5 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 CD49e fibronectin receptor, alpha polypeptide FNRA integrin, alpha 5 (fibronectin receptor, alpha polypeptide) "CD molecules|Integrin alpha subunits" "471|1160" 1988-07-19 2015-12-15 2016-01-15 3678 ENSG00000161638 OTTHUMG00000169841 uc001sga.4 NM_002205 CCDS8880 P08648 2454952 MGI:96604 RGD:2925 ITGA5 135620 objectId:2444 CD49e +HGNC:6142 ITGA6 integrin subunit alpha 6 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 CD49f integrin, alpha 6 "CD molecules|Integrin alpha subunits" "471|1160" 1991-08-06 2015-12-15 2015-12-15 3655 ENSG00000091409 OTTHUMG00000132277 uc002uho.2 XM_017004005 "CCDS2249|CCDS46451|CCDS82534" P23229 MGI:96605 RGD:621633 ITGA6 147556 122695 objectId:2445 CD49f +HGNC:6143 ITGA7 integrin subunit alpha 7 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 integrin, alpha 7 Integrin alpha subunits 1160 1992-02-27 2015-12-15 2016-10-12 3679 ENSG00000135424 OTTHUMG00000170699 uc001shg.4 NM_002206 "CCDS8888|CCDS44914|CCDS55832" Q13683 7607681 MGI:102700 RGD:71022 LRG_871|http://www.lrg-sequence.org/LRG/LRG_871 ITGA7 600536 166720 objectId:2446 +HGNC:6144 ITGA8 integrin subunit alpha 8 protein-coding gene gene with protein product Approved 10p13 10p13 integrin, alpha 8 Integrin alpha subunits 1160 1998-10-01 2015-12-15 2015-12-15 8516 ENSG00000077943 OTTHUMG00000017733 uc001ioc.2 L36531 NM_003638 CCDS31155 P53708 7768999 MGI:109442 RGD:621634 ITGA8 604063 395065 objectId:2447 +HGNC:6145 ITGA9 integrin subunit alpha 9 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "RLC|ITGA4L|ALPHA-RLC" integrin, alpha 4-like integrin, alpha 9 Integrin alpha subunits 1160 1994-05-12 2015-12-15 2016-10-05 3680 ENSG00000144668 OTTHUMG00000130815 uc003chd.4 L24158 NM_002207 CCDS2669 Q13797 "8245132|8290272" MGI:104756 RGD:1311191 ITGA9 603963 objectId:2448 +HGNC:49668 ITGA9-AS1 ITGA9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.2 03p22.2 2014-02-03 2014-02-27 101928153 ENSG00000235257 OTTHUMG00000155924 BC040563 NR_110531 +HGNC:6135 ITGA10 integrin subunit alpha 10 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 integrin, alpha 10 Integrin alpha subunits 1160 1998-10-01 2015-12-15 2015-12-15 8515 ENSG00000143127 OTTHUMG00000013751 uc001eoa.4 AF074015 NM_003637 "CCDS72869|CCDS76204" O75578 "9685391|10702680" MGI:2153482 RGD:1305152 ITGA10 604042 objectId:2438 +HGNC:6136 ITGA11 integrin subunit alpha 11 protein-coding gene gene with protein product Approved 15q23 15q23 HsT18964 integrin, alpha 11 Integrin alpha subunits 1160 1998-10-01 2015-12-15 2016-01-15 22801 ENSG00000137809 OTTHUMG00000172657 uc002ari.4 AF109681 NM_012211 CCDS45291 Q9UKX5 10486209 MGI:2442114 RGD:1311711 ITGA11 604789 objectId:2439 +HGNC:6146 ITGAD integrin subunit alpha D protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "CD11d|ADB2" integrin, alpha D "CD molecules|Integrin alpha subunits" "471|1160" 1997-06-09 2015-12-15 2016-01-15 3681 ENSG00000156886 OTTHUMG00000176614 uc002ebv.1 U40274 NM_005353 CCDS32438 Q13349 "8666289|9598326" MGI:3578624 RGD:71075 ITGAD 602453 objectId:2449 CD11d +HGNC:6147 ITGAE integrin subunit alpha E protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "CD103|HUMINAE" "antigen CD103|human mucosal lymphocyte antigen 1, alpha polypeptide" integrin, alpha E (antigen CD103, human mucosal lymphocyte antigen 1; alpha polypeptide) "CD molecules|Integrin alpha subunits" "471|1160" 1997-06-09 2015-12-15 2016-10-11 3682 ENSG00000083457 OTTHUMG00000177634 uc002fwo.5 L25851 NM_002208 CCDS32531 P38570 8119947 MGI:1298377 RGD:621644 ITGAE 604682 objectId:2450 CD103 +HGNC:6148 ITGAL integrin subunit alpha L protein-coding gene gene with protein product Approved 16p11.2 16p11.2 LFA-1 "antigen CD11A (p180)|lymphocyte function-associated antigen 1, alpha polypeptide" CD11A integrin, alpha L (antigen CD11A (p180), lymphocyte function-associated antigen 1; alpha polypeptide) "CD molecules|Integrin alpha subunits" "471|1160" 1986-01-01 2015-12-15 2016-01-15 3683 ENSG00000005844 OTTHUMG00000176964 uc002dyi.5 NM_002209 "CCDS32433|CCDS45461" P20701 3284962 MGI:96606 RGD:631424 ITGAL 153370 objectId:2451 CD11a +HGNC:6149 ITGAM integrin subunit alpha M protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "MAC-1|CD11b" complement component 3 receptor 3 subunit "CR3A|CD11B" "integrin, alpha M (complement component receptor 3, alpha; also known as CD11b (p170), macrophage antigen alpha polypeptide)|integrin, alpha M (complement component 3 receptor 3 subunit)" "CD molecules|Complement system|Integrin alpha subunits" "471|492|1160" 1988-08-05 2015-12-15 2015-12-15 3684 ENSG00000169896 OTTHUMG00000176612 uc002ebq.4 J03925 NM_000632 "CCDS45470|CCDS54004" P11215 MGI:96607 RGD:2926 ITGAM 120980 358399 objectId:2452 CD11b +HGNC:6150 ITGAV integrin subunit alpha V protein-coding gene gene with protein product Approved 2q32.1 02q32.1 CD51 "VNRA|MSK8|VTNR" "antigen identified by monoclonal antibody L230|vitronectin receptor|integrin, alpha V (vitronectin receptor, alpha polypeptide, antigen CD51)|integrin, alpha V" "CD molecules|Integrin alpha subunits" "471|1160" 1988-07-19 2015-12-15 2016-10-05 3685 ENSG00000138448 OTTHUMG00000132635 uc002upq.5 NM_002210 "CCDS2292|CCDS46470|CCDS46471" P06756 2454952 MGI:96608 RGD:1310613 ITGAV 193210 objectId:2453 CD51 +HGNC:6151 ITGAW entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-01-29 +HGNC:6152 ITGAX integrin subunit alpha X protein-coding gene gene with protein product Approved 16p11.2 16p11.2 CD11c complement component 3 receptor 4 subunit CD11C "integrin, alpha X (antigen CD11C (p150), alpha polypeptide)|integrin, alpha X (complement component 3 receptor 4 subunit)" "CD molecules|Complement system|Integrin alpha subunits" "471|492|1160" 1988-08-15 2015-12-15 2015-12-15 3687 ENSG00000140678 OTTHUMG00000132465 uc002ebu.2 BC038237 NM_000887 "CCDS10711|CCDS67014" P20702 "3284962|2303426" MGI:96609 RGD:1561123 ITGAX 151510 objectId:2454 CD11c +HGNC:6153 ITGB1 integrin subunit beta 1 protein-coding gene gene with protein product Approved 10p11.22 10p11.22 "CD29|GPIIA" "FNRB|MSK12|MDF2" integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) "CD molecules|Integrin beta subunits" "471|1159" 1988-06-27 2015-12-15 2016-10-05 3688 ENSG00000150093 OTTHUMG00000017928 uc001iwt.5 BC020057 NM_002211 CCDS7174 P05556 2524991 MGI:96610 RGD:2927 ITGB1 135630 objectId:2455 CD29 +HGNC:23927 ITGB1BP1 integrin subunit beta 1 binding protein 1 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "ICAP-1A|ICAP-1B|ICAP1|ICAP1A|ICAP1B|ICAP-1alpha" "integrin cytoplasmic domain-associated protein 1|integrin cytoplasmic domain-associated protein 1-beta|integrin cytoplasmic domain-associated protein 1-alpha|bodenin" integrin beta 1 binding protein 1 2003-12-15 2015-12-15 2016-10-05 9270 ENSG00000119185 OTTHUMG00000090414 uc061gmv.1 AF012023 "NM_004763|NM_022334" "CCDS1662|CCDS1663" O14713 "11854171|9281591" MGI:1306802 RGD:1307810 ITGB1BP1 607153 +HGNC:6154 ITGB1BP2 integrin subunit beta 1 binding protein 2 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 CHORDC3 melusin integrin beta 1 binding protein 2 2000-02-11 2015-12-15 2016-10-05 26548 ENSG00000147166 OTTHUMG00000021793 uc004dzr.2 AF140690 NM_012278 CCDS14411 Q9UKP3 10506186 MGI:1353420 RGD:1565015 ITGB1BP2 300332 +HGNC:3781 ITGB1P1 integrin subunit beta 1 pseudogene 1 pseudogene pseudogene Approved 19p13.12 19p13.12 ITGB1L FNRBL "fibronectin receptor, beta polypeptide-like|integrin beta 1 pseudogene 1" 1989-05-19 2010-10-13 2015-12-15 2015-12-15 100422691 ENSG00000269378 OTTHUMG00000183370 NG_024150 1979054 PGOHUM00000234172 +HGNC:6155 ITGB2 integrin subunit beta 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "LFA-1|MAC-1" complement component 3 receptor 3 and 4 subunit "CD18|MFI7" "integrin, beta 2 (antigen CD18 (p95), lymphocyte function-associated antigen 1; macrophage antigen 1 (mac-1) beta subunit)|integrin, beta 2 (complement component 3 receptor 3 and 4 subunit)" "CD molecules|Complement system|Integrin beta subunits" "471|492|1159" 1986-01-01 2015-12-15 2016-10-12 3689 ENSG00000160255 OTTHUMG00000090257 uc002zgf.5 AK222505 NM_000211 CCDS13716 P05107 MGI:96611 RGD:1305581 "ITGB2base: Mutation registry for Leukocyte adhesion deficiency I (LAD-I)|http://structure.bmc.lu.se/idbase/ITGB2base/|LRG_76|http://www.lrg-sequence.org/LRG/LRG_76" ITGB2 600065 122698 objectId:2456 CD18 +HGNC:44304 ITGB2-AS1 ITGB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 ITGB2 antisense RNA 1 (non-protein coding) 2012-08-08 2012-08-15 2012-10-12 100505746 ENSG00000227039 OTTHUMG00000090253 uc021wjv.2 "BC040064|BC051807" NR_038311 +HGNC:6156 ITGB3 integrin subunit beta 3 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "CD61|GPIIIa" "platelet glycoprotein IIIa|antigen CD61" GP3A integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61) "CD molecules|Integrin beta subunits" "471|1159" 1988-06-09 2015-12-15 2016-10-12 3690 ENSG00000259207 OTTHUMG00000171956 uc002ilj.4 NM_000212 CCDS11511 P05106 2454952 MGI:96612 RGD:628868 LRG_481|http://www.lrg-sequence.org/LRG/LRG_481 ITGB3 173470 122704 objectId:2457 CD61 +HGNC:6157 ITGB3BP integrin subunit beta 3 binding protein protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "NRIF3|HSU37139|TAP20|CENPR" "centromere protein R|beta3-endonexin" integrin beta 3 binding protein (beta3-endonexin) 2000-05-08 2015-12-15 2015-12-15 23421 ENSG00000142856 OTTHUMG00000013364 uc001dba.3 U37139 NM_014288 "CCDS30736|CCDS55603" Q13352 "7593198|10490654" MGI:1914983 RGD:1310044 ITGB3BP 605494 +HGNC:6158 ITGB4 integrin subunit beta 4 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 CD104 integrin, beta 4 "CD molecules|Fibronectin type III domain containing|Integrin beta subunits" "471|555|1159" 1991-08-06 2015-12-15 2015-12-15 3691 ENSG00000132470 OTTHUMG00000179814 uc002jpj.4 NM_001321123 "CCDS11727|CCDS32736|CCDS58599" P16144 2070796 MGI:96613 RGD:2928 ITGB4 147557 122708 objectId:2458 CD104 +HGNC:6160 ITGB5 integrin subunit beta 5 protein-coding gene gene with protein product Approved 3q21.2 03q21.2 integrin, beta 5 Integrin beta subunits 1159 1991-07-30 2015-12-15 2015-12-15 3693 ENSG00000082781 OTTHUMG00000159432 uc003eho.4 J05633 NM_002213 CCDS3030 P18084 2211615 MGI:96614 RGD:628869 ITGB5 147561 objectId:2459 +HGNC:40309 ITGB5-AS1 ITGB5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q21.2 03q21.2 ITGB5 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873992 ENSG00000244286 OTTHUMG00000159559 uc062nfr.1 +HGNC:6161 ITGB6 integrin subunit beta 6 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 integrin, beta 6 Integrin beta subunits 1159 1992-02-14 2015-12-15 2015-12-15 3694 ENSG00000115221 OTTHUMG00000132026 uc010fou.4 NM_000888 "CCDS2212|CCDS63040|CCDS74596|CCDS74597" P18564 "1729173|8120056" MGI:96615 RGD:1303119 ITGB6 147558 400703 objectId:2460 +HGNC:6162 ITGB7 integrin subunit beta 7 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 integrin, beta 7 Integrin beta subunits 1159 1991-10-07 2015-12-15 2016-10-11 3695 ENSG00000139626 OTTHUMG00000169775 uc001scc.4 XM_005268851 CCDS8849 P26010 2040616 MGI:96616 RGD:2929 ITGB7 147559 objectId:2461 +HGNC:6163 ITGB8 integrin subunit beta 8 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 integrin, beta 8 Integrin beta subunits 1159 1992-10-06 2015-12-15 2016-10-05 3696 ENSG00000105855 OTTHUMG00000023594 uc003suu.4 NM_002214 CCDS5370 P26012 MGI:1338035 RGD:1311374 ITGB8 604160 objectId:2462 +HGNC:6164 ITGBL1 integrin subunit beta like 1 protein-coding gene gene with protein product Approved 13q33.1 13q33.1 "TIED|OSCP" "ten integrin EGF-like repeat domains protein|ITGBL1, integrin beta-like 1" integrin, beta-like 1 (with EGF-like repeat domains) Integrin beta subunits 1159 1998-11-30 2015-12-15 2016-10-05 9358 ENSG00000198542 OTTHUMG00000017296 uc001vpb.5 AF072752 NM_004791 "CCDS9499|CCDS61361|CCDS61362|CCDS73594" O95965 10051402 MGI:2443439 RGD:1560635 ITGBL1 604234 +HGNC:6166 ITIH1 inter-alpha-trypsin inhibitor heavy chain 1 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "H1P|IATIH|ITIH" inter-alpha (globulin) inhibitor, H1 polypeptide 1989-05-10 2011-10-26 2014-11-19 3697 ENSG00000055957 OTTHUMG00000150312 uc003dfs.4 NM_002215 "CCDS2864|CCDS54595" P19827 "1385302|10100603" MGI:96618 RGD:1306099 ITIH1 147270 +HGNC:6167 ITIH2 inter-alpha-trypsin inhibitor heavy chain 2 protein-coding gene gene with protein product Approved 10p14 10p14 H2P inter-alpha (globulin) inhibitor, H2 polypeptide Gla domain containing 1250 1989-05-10 2011-10-26 2014-11-18 3698 ENSG00000151655 OTTHUMG00000017633 uc001ijs.4 X07173 NM_002216 CCDS31141 P19823 "1385302|10100603" MGI:96619 RGD:1565426 ITIH2 146640 +HGNC:43432 ITIH2-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-11-21 +HGNC:6168 ITIH3 inter-alpha-trypsin inhibitor heavy chain 3 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 H3P "pre-alpha (globulin) inhibitor, H3 polypeptide|inter-alpha-trypsin inhibitor heavy chain H3" "inter-alpha (globulin) inhibitor, H3 polypeptide|inter-alpha (globulin) inhibitor H3" 1989-05-10 2011-10-26 2014-11-19 3699 ENSG00000162267 OTTHUMG00000158956 uc003dfv.3 NM_002217 CCDS46845 Q06033 "2465147|10100603" MGI:96620 RGD:620633 ITIH3 146650 +HGNC:6169 ITIH4 inter-alpha-trypsin inhibitor heavy chain family member 4 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "IHRP|H4P" plasma Kallikrein-sensitive glycoprotein ITIHL1 "inter-alpha (globulin) inhibitor H4 (plasma Kallikrein-sensitive glycoprotein)|inter-alpha-trypsin inhibitor heavy chain family, member 4" 1995-11-30 2015-11-18 2015-11-18 3700 ENSG00000055955 OTTHUMG00000159023 uc003dfz.4 D38535 NM_002218 "CCDS2865|CCDS54596" Q14624 "9480842|7805892" MGI:109536 RGD:70881 ITIH4 600564 +HGNC:40310 ITIH4-AS1 ITIH4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.1 03p21.1 ITIH4 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-18 100873993 ENSG00000239799 OTTHUMG00000158983 uc062kqt.1 NR_046615 +HGNC:21449 ITIH5 inter-alpha-trypsin inhibitor heavy chain family member 5 protein-coding gene gene with protein product Approved 10p14 10p14 MGC10848 "inter-alpha (globulin) inhibitor H5|inter-alpha-trypsin inhibitor heavy chain family, member 5" 2004-01-28 2015-11-18 2015-11-18 80760 ENSG00000123243 OTTHUMG00000017635 uc031vwl.2 NM_030569 CCDS31140 Q86UX2 14744536 MGI:1925751 ITIH5 609783 +HGNC:28907 ITIH6 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 UNQ6369 ITIH5L "inter-alpha (globulin) inhibitor H5-like|inter-alpha-trypsin inhibitor heavy chain family, member 6" 2004-08-16 2011-10-26 2015-11-18 2016-10-05 347365 ENSG00000102313 OTTHUMG00000021634 uc004dtj.2 AY358170 NM_198510 CCDS14361 Q6UXX5 12975309 MGI:2685232 RGD:6485811 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ITIH5L +HGNC:6171 ITK IL2 inducible T-cell kinase protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "EMT|PSCTK2|LYK" IL2-inducible T-cell kinase "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 1995-12-18 2016-01-22 2016-10-12 3702 ENSG00000113263 OTTHUMG00000130245 uc003lwo.2 D13720 XM_017009443 CCDS4336 Q08881 8364206 MGI:96621 RGD:1311618 LRG_189|http://www.lrg-sequence.org/LRG/LRG_189 ITK 186973 244711 objectId:2046 2.7.10.2 +HGNC:18259 ITLN1 intelectin 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "ITLN|FLJ20022|LFR|HL-1|hIntL" omentin intelectin 1 (galactofuranose binding) 2003-03-14 2016-03-07 2016-10-05 55600 ENSG00000179914 OTTHUMG00000028604 uc001fxc.4 AB036706 NM_017625 CCDS1211 Q8WWA0 "11313366|11181563" MGI:1333831 RGD:1561048 ITLN1 609873 +HGNC:20599 ITLN2 intelectin 2 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 HL-2 Fibrinogen C domain containing 554 2003-04-28 2016-10-05 142683 ENSG00000158764 OTTHUMG00000028605 uc001fxd.4 AY065973 NM_080878 CCDS1212 Q8WWU7 11181563 MGI:1333831 ITLN2 609874 +HGNC:6173 ITM2A integral membrane protein 2A protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "BRICD2A|E25A" BRICHOS domain containing 2A BRICHOS domain containing 457 1999-04-15 2016-10-05 9452 ENSG00000078596 OTTHUMG00000021900 uc004edh.4 BC034485 NM_004867 "CCDS14444|CCDS55455" O43736 "9892734|8702637" MGI:107706 RGD:1559423 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ITM2A ITM2A 300222 395153 +HGNC:6174 ITM2B integral membrane protein 2B protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "BRI|E25B|E3-16|BRICD2B|BRI2" BRICHOS domain containing 2B BRICHOS domain containing 457 1999-04-15 2015-10-07 9445 ENSG00000136156 OTTHUMG00000016894 uc001vbz.4 AF092128 NM_021999 CCDS9409 Q9Y287 9795190 MGI:1309517 RGD:620727 ITM2B 603904 122711 +HGNC:20919 ITM2BP1 integral membrane protein 2B pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 HsT33912 ITM2BP integral membrane protein 2B pseudogene 2005-12-20 2010-04-14 2010-04-14 2014-11-19 100420308 ENSG00000266853 OTTHUMG00000179257 NG_026163 PGOHUM00000236999 +HGNC:6175 ITM2C integral membrane protein 2C protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "BRI3|E25|hRPC.1050_D_4|ITM3|BRICD2C" BRICHOS domain containing 2C BRICHOS domain containing 457 1999-07-22 2016-10-05 81618 ENSG00000135916 OTTHUMG00000133219 uc002vqz.5 AF038953 NM_030926 "CCDS2479|CCDS33395|CCDS33396|CCDS74665" Q9NQX7 9653160 MGI:1927594 RGD:1309503 ITM2C 609554 +HGNC:6176 ITPA inosine triphosphatase protein-coding gene gene with protein product Approved 20p13 20p13 "HLC14-06-P|dJ794I6.3" nucleoside-triphosphate diphosphatase C20orf37 inosine triphosphatase (nucleoside triphosphate pyrophosphatase) 1986-01-01 2015-12-16 2016-10-05 3704 ENSG00000125877 OTTHUMG00000031738 uc002wid.4 AF026816 NM_033453 "CCDS13051|CCDS46576|CCDS58762" Q9BY32 11278832 MGI:96622 RGD:1589751 ITPA 147520 284116 3.6.1.19 +HGNC:6177 ITPK1 inositol-tetrakisphosphate 1-kinase protein-coding gene gene with protein product Approved 14q32.12 14q32.12 inositol 1,3,4-triphosphate 5/6 kinase 1997-06-12 2011-04-28 2014-11-19 3705 ENSG00000100605 OTTHUMG00000171226 uc001ybg.4 U51336 NM_014216 "CCDS9907|CCDS45157" Q13572 "8662638|11042108" MGI:2446159 RGD:1595691 ITPK1 601838 2.7.1.134 +HGNC:20132 ITPK1-AS1 ITPK1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q32.12 14q32.12 "C14orf85|NCRNA00203|ITPK1AS|ITPK1-AS" "chromosome 14 open reading frame 85|non-protein coding RNA 203|ITPK1 antisense RNA (non-protein coding)|ITPK1 antisense RNA 1 (non-protein coding)" 2003-01-13 2010-11-25 2012-08-15 2012-10-12 319085 ENSG00000258730 OTTHUMG00000171263 uc001ybi.4 AK024887 NR_002808 +HGNC:6178 ITPKA inositol-trisphosphate 3-kinase A protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "IP3KA|IP3-3KA" inositol 1,4,5-trisphosphate 3-kinase A 1992-04-15 2011-04-28 2014-11-18 3706 ENSG00000137825 OTTHUMG00000130343 uc001znz.4 X54938 NM_002220 CCDS10076 P23677 "1330886|2175886" MGI:1333822 RGD:619950 ITPKA 147521 objectId:1447 2.7.1.127 +HGNC:6179 ITPKB inositol-trisphosphate 3-kinase B protein-coding gene gene with protein product Approved 1q42.12 01q42.12 "IP3KB|IP3-3KB" inositol 1,4,5-trisphosphate 3-kinase B 1992-04-15 2011-04-28 2014-11-19 3707 ENSG00000143772 OTTHUMG00000037582 uc010pvo.2 AJ242780 NM_002221 CCDS1555 P27987 "1654894|1330886" MGI:109235 RGD:2932 ITPKB 147522 objectId:1448 2.7.1.127 +HGNC:40312 ITPKB-AS1 ITPKB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q42.12 01q42.12 ITPKB antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100873994 ENSG00000228548 OTTHUMG00000041340 uc057pyy.1 +HGNC:41349 ITPKB-IT1 ITPKB intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q42.12 01q42.12 ITPKB intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100506443 ENSG00000228382 OTTHUMG00000037587 uc031vpw.2 NR_103784 +HGNC:14897 ITPKC inositol-trisphosphate 3-kinase C protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "IP3KC|IP3-3KC" inositol 1,4,5-trisphosphate 3-kinase C 2001-06-28 2011-04-28 2016-10-11 80271 ENSG00000086544 OTTHUMG00000182688 uc002oot.5 Y11999 NM_025194 CCDS12563 Q96DU7 11085927 MGI:2442554 RGD:631336 ITPKC 606476 objectId:1449 2.7.1.127 +HGNC:6180 ITPR1 inositol 1,4,5-trisphosphate receptor type 1 protein-coding gene gene with protein product Approved 3p26.1 03p26.1 "Insp3r1|IP3R1|ACV|PPP1R94" protein phosphatase 1, regulatory subunit 94 "SCA15|SCA16|SCA29" "spinocerebellar ataxia 15|spinocerebellar ataxia 16|spinocerebellar ataxia 29|inositol 1,4,5-trisphosphate receptor, type 1" "Inositol 1,4,5-triphosphate receptors|Protein phosphatase 1 regulatory subunits" "297|694" 1990-03-14 2016-02-05 2016-04-25 3708 ENSG00000150995 OTTHUMG00000154996 uc021wsi.3 D26070 NM_002222 "CCDS46740|CCDS54550|CCDS54551" Q14643 "7945203|7500840|17590087|17932120|22986007" MGI:96623 RGD:2933 ITPR1 147265 159904 objectId:743 +HGNC:44470 ITPR1-AS1 ITPR1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3p26.1 03p26.1 2012-11-01 2012-11-01 100996539 ENSG00000231249 OTTHUMG00000154994 uc032rcf.2 BU629368 NR_108075 +HGNC:6181 ITPR2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding gene gene with protein product Approved 12p11.23 12p11.23 "IP3R2|CFAP48" cilia and flagella associated protein 48 "inositol 1,4,5-triphosphate receptor, type 2|inositol 1,4,5-trisphosphate receptor, type 2" Inositol 1,4,5-triphosphate receptors 297 1991-06-05 2016-02-05 2016-02-05 3709 ENSG00000123104 OTTHUMG00000169181 uc001rhg.4 D26350 NM_002223 CCDS41764 Q14571 8081734 MGI:99418 RGD:69649 ITPR2 600144 objectId:744 +HGNC:6182 ITPR3 inositol 1,4,5-trisphosphate receptor type 3 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 IP3R3 "inositol 1,4,5-triphosphate receptor, type 3|inositol 1,4,5-trisphosphate receptor, type 3" "Inositol 1,4,5-triphosphate receptors|Protein phosphatase 1 regulatory subunits" "297|694" 1991-06-05 2016-02-05 2016-02-05 3710 ENSG00000096433 OTTHUMG00000014532 uc063nyh.1 D26351 NM_002224 CCDS4783 Q14573 "8081734|8288584" MGI:96624 RGD:2934 ITPR3 147267 objectId:745 +HGNC:29370 ITPRIP inositol 1,4,5-trisphosphate receptor interacting protein protein-coding gene gene with protein product Approved 10q25.1 10q25.1 "bA127L20.2|DANGER" KIAA1754 "KIAA1754|inositol 1,4,5-triphosphate receptor interacting protein" 2004-02-18 2008-08-11 2011-04-28 2015-08-04 85450 ENSG00000148841 OTTHUMG00000184003 uc001kyg.5 AB051541 NM_033397 CCDS7557 Q8IWB1 "11214970|16990268" MGI:3042776 RGD:6488464 ITPRIP +HGNC:29371 ITPRIPL1 inositol 1,4,5-trisphosphate receptor interacting protein-like 1 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 KIAA1754L "KIAA1754-like|inositol 1,4,5-triphosphate receptor interacting protein-like 1" 2008-03-12 2008-08-11 2011-04-28 2014-11-18 150771 ENSG00000198885 OTTHUMG00000155230 uc002svx.4 NM_178495 "CCDS33250|CCDS46360|CCDS54378" Q6GPH6 12477932 MGI:1920588 RGD:1564158 ITPRIPL1 +HGNC:27257 ITPRIPL2 inositol 1,4,5-trisphosphate receptor interacting protein like 2 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "FLJ22994|MGC126798|MGC126800|LOC162073" 2008-08-11 2016-07-18 2016-07-18 162073 ENSG00000205730 OTTHUMG00000177199 uc002dfu.5 NM_001034841 CCDS32395 Q3MIP1 MGI:2442416 RGD:1564255 ITPRIPL2 +HGNC:6183 ITSN1 intersectin 1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "SH3P17|MGC134948|MGC134949" "SH3 domain protein-1A|human intersectin-SH3 domain-containing protein SH3P17|Src homology 3 domain-containing protein|intersectin 1 short form variant, 11|intersectin 1 short form variant 3|intersectin short variant 12" "SH3D1A|ITSN" intersectin 1 (SH3 domain protein) "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|C2 domain containing|EF-hand domain containing" "682|722|823|863" 1997-04-25 2015-11-10 2016-10-05 6453 ENSG00000205726 OTTHUMG00000065284 uc002yta.2 AF064244 NM_003024 "CCDS33545|CCDS33546|CCDS82661|CCDS82663|CCDS82664|CCDS82665|CCDS82666" Q15811 "9799604|9813051" MGI:1338069 RGD:2935 ITSN1 602442 +HGNC:6184 ITSN2 intersectin 2 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "KIAA1256|SWAP|SH3P18|SWA|PRO2015" "SH3 domain protein 1B|SH3P18-like WASP associated protein" SH3D1B SH3 domain protein 1B "Rho guanine nucleotide exchange factors|C2 domain containing|EF-hand domain containing" "722|823|863" 2000-03-29 2002-10-30 2014-11-19 50618 ENSG00000198399 OTTHUMG00000090818 uc002rfe.3 AB033082 NM_006277 "CCDS1710|CCDS1711|CCDS46230" Q9NZM3 "10922467|11748279" MGI:1338049 RGD:1590890 ITSN2 604464 +HGNC:6185 IV inversus situs, viscerum phenotype phenotype only Approved 14q32 14q32 SIV 1993-06-11 2011-03-15 8114 +HGNC:6186 IVD isovaleryl-CoA dehydrogenase protein-coding gene gene with protein product Approved 15q15.1 15q15.1 ACAD2 "isovaleryl Coenzyme A dehydrogenase|isovaleryl CoA dehydrogenase" Acyl-CoA dehydrogenase family 974 1986-01-01 2010-05-11 2016-06-28 3712 ENSG00000128928 OTTHUMG00000129984 uc001zls.4 AF038317 XM_017022149 "CCDS10057|CCDS53930" P26440 2063866 MGI:1929242 RGD:2936 IVD 607036 122716 1.3.99.10 +HGNC:6187 IVL involucrin protein-coding gene gene with protein product Approved 1q21.3 01q21.3 1986-01-01 2016-10-05 3713 ENSG00000163207 OTTHUMG00000012451 uc001fau.4 BC046391 NM_005547 CCDS1030 P07476 2873896 MGI:96626 RGD:620141 IVL 147360 +HGNC:16951 IVNS1ABP influenza virus NS1A binding protein protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "NS1-BP|HSPC068|NS-1|KIAA0850|ND1|KLHL39" kelch-like family member 39 "Kelch like|BTB domain containing" "617|861" 2003-05-19 2016-10-05 10625 ENSG00000116679 OTTHUMG00000035384 uc001grl.4 AB020657 NM_006469 CCDS1368 Q9Y6Y0 "9696811|10048485" MGI:2152389 RGD:1306290 IVNS1ABP 609209 +HGNC:25467 IWS1 IWS1, SUPT6H interacting protein protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "DKFZp761G0123|FLJ10006|FLJ14655|FLJ32319" IWS1 homolog (S. cerevisiae) 2006-03-17 2016-01-06 2016-01-06 55677 ENSG00000163166 OTTHUMG00000131527 uc002ton.3 AK000868 NM_017969 CCDS2146 Q96ST2 17234882 MGI:1920723 RGD:1304762 IWS1 +HGNC:21071 IYD iodotyrosine deiodinase protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "dJ422F24.1|DEHAL1" C6orf71 chromosome 6 open reading frame 71 2003-11-26 2006-08-24 2006-08-24 2014-11-18 389434 ENSG00000009765 OTTHUMG00000016347 uc003qnu.3 AK129950 NM_203395 "CCDS5227|CCDS55066|CCDS55067" Q6PHW0 "16316988|15289438" MGI:1917587 RGD:1309288 IYD 612025 201101 objectId:2488 +HGNC:28539 IZUMO1 izumo sperm-egg fusion 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "IZUMO|MGC34799|OBF" oocyte binding/fusion factor IZUMO family 56 2005-06-01 2014-07-23 284359 ENSG00000182264 OTTHUMG00000183324 uc002pkj.3 BC034769 NM_182575 CCDS12732 Q8IYV9 "15759005|18952059|19658160|22957301" MGI:1920706 RGD:1565454 IZUMO1 609278 +HGNC:32565 IZUMO1R IZUMO1 receptor, JUNO protein-coding gene gene with protein product Approved 11q21 11q21 "Folbp3|JUNO" FOLR4 "folate receptor 4 (delta) homolog (mouse)|folate receptor 4, delta (putative)" 2008-12-08 2014-10-13 2014-10-13 2016-10-11 390243 ENSG00000183560 OTTHUMG00000167776 NM_001080486 CCDS81615 A6ND01 "11111049|24739963" MGI:1929185 RGD:1585174 615737 +HGNC:28518 IZUMO2 IZUMO family member 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "MGC33947|SCRL" C19orf41 chromosome 19 open reading frame 41 IZUMO family 56 2006-04-03 2010-07-29 2010-07-29 2014-11-18 126123 ENSG00000161652 OTTHUMG00000074063 uc002prp.2 AY358196 NM_152358 CCDS12792 Q6UXV1 "19658160|22957301" MGI:1922760 RGD:1562619 IZUMO2 +HGNC:31421 IZUMO3 IZUMO family member 3 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 bA20A20.1 C9orf134 chromosome 9 open reading frame 134 IZUMO family 56 2004-04-16 2010-07-29 2010-07-29 2015-08-25 100129669 ENSG00000205442 OTTHUMG00000019704 uc031tdg.1 NM_001271706 CCDS65020 Q5VZ72 "19658160|22957301" MGI:1916564 RGD:2324467 IZUMO3 +HGNC:26950 IZUMO4 IZUMO family member 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 C19orf36 chromosome 19 open reading frame 36 IZUMO family 56 2004-08-03 2010-07-29 2010-07-29 2015-08-25 113177 ENSG00000099840 OTTHUMG00000141290 uc002lux.2 BC014609 NM_052878 "CCDS35499|CCDS42458" Q1ZYL8 "12975309|19658160|22957301" MGI:1918814 RGD:1564722 IZUMO4 +HGNC:30027 JADE1 jade family PHD finger 1 protein-coding gene gene with protein product Approved 4q28.2 04q28.2 JADE-1 PHF17 PHD finger protein 17 PHD finger proteins 88 2004-03-01 2013-10-11 2013-10-11 2016-01-15 79960 ENSG00000077684 OTTHUMG00000161176 NM_024900 "CCDS34062|CCDS47134|CCDS75191" Q6IE81 "11347906|12169691" MGI:1925835 RGD:1306920 610514 +HGNC:22984 JADE2 jade family PHD finger 2 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "KIAA0239|JADE-2" PHF15 PHD finger protein 15 PHD finger proteins 88 2003-08-11 2013-10-11 2013-10-11 2016-10-05 23338 ENSG00000043143 OTTHUMG00000129122 AJ251833 NM_015288 "CCDS4176|CCDS75305|CCDS78061" Q9NQC1 MGI:1924151 RGD:1309152 610515 +HGNC:22982 JADE3 jade family PHD finger 3 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "KIAA0215|JADE-3" PHF16 PHD finger protein 16 PHD finger proteins 88 2003-08-08 2013-10-11 2013-10-11 2014-11-18 9767 ENSG00000102221 OTTHUMG00000021431 AF127774 NM_014735 CCDS14271 Q92613 11944989 MGI:2148019 RGD:1563945 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=JADE3 300618 +HGNC:48601 JADRR JADE1 adjacent regulatory RNA non-coding RNA RNA, long non-coding Approved 4q28.2 04q28.2 lncRNA-JADE LINC00915 long intergenic non-protein coding RNA 915 Long non-coding RNAs 788 2013-05-24 2013-10-11 2013-10-11 2013-10-11 101669763 ENSG00000280711 OTTHUMG00000189573 KC469579 24097061 +HGNC:6188 JAG1 jagged 1 protein-coding gene gene with protein product Approved 20p12.2 20p12.2 "AHD|AWS|HJ1|CD339" "AGS|JAGL1" Alagille syndrome CD molecules 471 1997-05-22 2010-06-24 2016-10-05 182 ENSG00000101384 OTTHUMG00000031872 uc002wnw.3 U61276 NM_000214 CCDS13112 P78504 "7697721|9207788" MGI:1095416 RGD:2937 JAG1 database at LOVD-China|http://genomed.org/LOVD/ALGS/home.php?select_db=JAG1 JAG1 601920 122719 CD339 +HGNC:6189 JAG2 jagged 2 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 1998-06-05 2016-10-05 3714 ENSG00000184916 OTTHUMG00000140172 uc001yqg.4 AF020201 XR_001750303 "CCDS9998|CCDS9999" Q9Y219 "9315665|10662552" MGI:1098270 RGD:2938 JAG2 602570 +HGNC:26926 JAGN1 jagunal homolog 1 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "GL009|FLJ14602" jagunal homolog 1 (Drosophila) 2005-01-19 2015-06-09 2016-10-05 84522 ENSG00000171135 OTTHUMG00000128523 uc003btt.5 AK074760 NM_032492 CCDS2588 Q8N5M9 25129144 MGI:1915017 RGD:1565488 JAGN1 616012 431604 +HGNC:6190 JAK1 Janus kinase 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "JAK1A|JTK3" JAK1B FERM domain containing 1293 1992-04-16 2009-04-23 2016-10-05 3716 ENSG00000162434 OTTHUMG00000009310 uc001dbu.2 M64174 NM_002227 CCDS41346 P23458 "1848670|7698020" MGI:96628 RGD:69056 JAK1 147795 objectId:2047 2.7.10.1 +HGNC:6192 JAK2 Janus kinase 2 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 JTK10 "SH2 domain containing|FERM domain containing" "741|1293" 1992-04-16 2009-04-23 2016-10-12 3717 ENSG00000096968 OTTHUMG00000019490 uc003ziw.3 NM_001322195 CCDS6457 O60674 1848670 MGI:96629 RGD:2939 LRG_612|http://www.lrg-sequence.org/LRG/LRG_612 JAK2 147796 122727 objectId:2048 2.7.10.1 +HGNC:6193 JAK3 Janus kinase 3 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "L-JAK|JAKL|LJAK|JAK3_HUMAN|JAK-3" "tyrosine-protein kinase JAK3|leukocyte Janus kinase" 1994-12-19 2009-04-23 2016-10-12 3718 ENSG00000105639 OTTHUMG00000165648 uc002nhn.5 U31601 NM_000215 CCDS12366 P52333 "8921370|9226382" MGI:99928 RGD:2940 "JAK3base: Mutation registry for autosomal recessive severe combined JAK3 deficiency|http://structure.bmc.lu.se/idbase/JAK3base/|LRG_77|http://www.lrg-sequence.org/LRG/LRG_77" JAK3 600173 122729 objectId:2049 2.7.10.1 +HGNC:26460 JAKMIP1 janus kinase and microtubule interacting protein 1 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "MARLIN1|JAMIP1|Gababrbp|FLJ31564" 2006-02-23 2009-08-13 2014-11-18 152789 ENSG00000152969 OTTHUMG00000125491 uc003giv.5 AK056126 NM_144720 "CCDS3385|CCDS47005|CCDS77897" Q96N16 18941173 MGI:1923321 RGD:1562401 JAKMIP1 611195 +HGNC:29067 JAKMIP2 janus kinase and microtubule interacting protein 2 protein-coding gene gene with protein product Approved 5q32 05q32 "JAMIP2|KIAA0555" 2006-02-23 2009-08-13 2014-11-19 9832 ENSG00000176049 OTTHUMG00000129731 uc003loq.3 AB011127 NM_014790 "CCDS4285|CCDS59495|CCDS64284|CCDS75352" Q96AA8 9628581 MGI:1923467 RGD:1559742 JAKMIP2 611197 +HGNC:27203 JAKMIP2-AS1 JAKMIP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q32 05q32 JAKMIP2 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 153469 ENSG00000280780 OTTHUMG00000189513 uc003lop.2 AK027578 NR_038902 +HGNC:23523 JAKMIP3 Janus kinase and microtubule interacting protein 3 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "FLJ37857|NECC2|KIAA4091|bA140A10.5" neuroendocrine long coiled-coil 2 "C10orf39|C10orf14" "chromosome 10 open reading frame 39|chromosome 10 open reading frame 14" 2003-11-21 2008-01-28 2009-04-23 2015-09-01 282973 ENSG00000188385 OTTHUMG00000150167 uc001lkx.5 AL832756 NM_194303 CCDS44494 Q5VZ66 "15277531|17572408" MGI:1921254 RGD:1307177 JAKMIP3 611198 +HGNC:14686 JAM2 junctional adhesion molecule 2 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "VE-JAM|JAM-B|JAMB|CD322" C21orf43 "CD molecules|V-set domain containing|I-set domain containing" "471|590|593" 2001-04-25 2016-10-05 58494 ENSG00000154721 OTTHUMG00000078441 uc002ylp.3 AF255910 XR_937537 "CCDS42911|CCDS58787|CCDS58788" P57087 "10779521|10945976" MGI:1933820 RGD:1561692 JAM2 606870 CD322 +HGNC:15532 JAM3 junctional adhesion molecule 3 protein-coding gene gene with protein product Approved 11q25 11q25 "JAM-C|JAMC" "V-set domain containing|Immunoglobulin like domain containing" "590|594" 2001-04-26 2016-04-25 83700 ENSG00000166086 OTTHUMG00000167130 uc001qhb.4 AF356518 NM_032801 "CCDS55799|CCDS8494" Q9BX67 MGI:1933825 RGD:1303248 JAM3 606871 311118 +HGNC:19084 JAML junction adhesion molecule like protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "Gm638|AMICA" AMICA1 adhesion molecule, interacts with CXADR antigen 1 V-set domain containing 590 2002-09-12 2015-11-24 2015-11-24 2015-11-24 120425 ENSG00000160593 uc001psi.3 "AY138965|AY358362" NM_153206 "CCDS8391|CCDS41723|CCDS66240" Q86YT9 12975309 MGI:2685484 RGD:1562572 609770 +HGNC:6196 JARID2 jumonji and AT-rich interaction domain containing 2 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 JMJ "jumonji (mouse) homolog|Jumonji, AT rich interactive domain 2|jumonji, AT rich interactive domain 2" AT-rich interaction domain containing 418 1997-09-05 2004-01-30 2015-11-17 2016-10-05 3720 ENSG00000008083 OTTHUMG00000014293 uc003nbj.5 U57592 NM_004973 "CCDS4533|CCDS58996" Q92833 8894700 MGI:104813 RGD:1591663 JARID2 601594 +HGNC:40314 JARID2-AS1 JARID2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p22.3 06p22.3 JARID2 antisense RNA 1 (non-protein coding) 2011-12-05 2012-08-15 2014-11-19 100506681 ENSG00000235488 OTTHUMG00000014292 uc003nbk.4 "AW340306|AW665239" NR_120502 +HGNC:28917 JAZF1 JAZF zinc finger 1 protein-coding gene gene with protein product Approved 7p15.2-p15.1 07p15.2-p15.1 "TIP27|DKFZp761K2222|ZNF802" Zinc fingers C2H2-type 28 2006-10-05 2016-10-11 221895 ENSG00000153814 OTTHUMG00000128545 uc003szn.4 BC047229 NM_175061 CCDS5416 Q86VZ6 8401585 MGI:2141450 RGD:1589007 JAZF1 606246 364833 +HGNC:41218 JAZF1-AS1 JAZF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p15.1 07p15.1 JAZF1 antisense RNA 1 (non-protein coding) 2011-12-05 2012-08-15 2014-11-19 100128081 ENSG00000234336 OTTHUMG00000152771 uc064cjd.1 NR_034097 +HGNC:6194 JBS Jacobsen syndrome phenotype phenotype only Approved 11q24.1 11q24.1 1990-03-21 1990-06-12 3719 +HGNC:5713 JCHAIN joining chain of multimeric IgA and IgM protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "IGCJ|JCH" "immunoglobulin J chain|IgJ chain|J chain" IGJ immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides 2001-06-22 2015-04-02 2015-04-02 2016-10-05 3512 ENSG00000132465 OTTHUMG00000129909 M12759 NM_144646 CCDS3545 P01591 "3016707|2984306" MGI:96493 RGD:1310155 147790 +HGNC:17546 JDP2 Jun dimerization protein 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 JUNDM2 progesterone receptor co-activator Basic leucine zipper proteins 506 2008-03-26 2008-04-10 2016-10-11 122953 ENSG00000140044 OTTHUMG00000171869 uc010tvc.3 AF111167 NM_130469 "CCDS9842|CCDS45139" Q8WYK2 "12052888|9154808|17545590" MGI:1932093 RGD:621611 JDP2 608657 +HGNC:48959 JHDM1D-AS1 JHDM1D antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 7q34 07q34 2013-07-23 2013-07-23 100134229 ENSG00000260231 OTTHUMG00000173155 NR_024451 +HGNC:20184 JKAMP JNK1/MAPK8-associated membrane protein protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "HSPC213|JAMP|HSPC327|CDA06" Jun N-terminal kinase 1-associated membrane protein C14orf100 chromosome 14 open reading frame 100 2002-12-20 2009-08-13 2009-08-13 2016-10-05 51528 ENSG00000050130 OTTHUMG00000171054 uc001xef.6 AF212245 NM_001098625 "CCDS45116|CCDS45117|CCDS61462|CCDS61463" Q9P055 "16166642|19269966" MGI:1915057 RGD:1308917 JKAMP 611176 +HGNC:49759 JKAMPP1 JNK1/MAPK8-associated membrane protein pseudogene 1 pseudogene pseudogene Approved 9p23 09p23 2014-02-14 2014-02-14 100049717 ENSG00000231491 OTTHUMG00000019556 NG_006081 PGOHUM00000236387 +HGNC:12313 JMJD1C jumonji domain containing 1C protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "DKFZp761F0118|KIAA1380|FLJ14374" TRIP8 thyroid hormone receptor interactor 8 1999-03-19 2004-04-01 2004-03-31 2016-10-05 221037 ENSG00000171988 OTTHUMG00000018311 uc001jmn.5 L40411 NM_004241 "CCDS41532|CCDS60538" Q15652 7776974 MGI:1918614 RGD:708458 JMJD1C 604503 410615 objectId:2663 +HGNC:28222 JMJD1C-AS1 JMJD1C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q21.3 10q21.3 2013-02-07 2013-02-07 84989 ENSG00000272767 OTTHUMG00000186280 uc010qir.3 AK314171 NR_027182 12477932 +HGNC:25724 JMJD4 jumonji domain containing 4 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 FLJ12517 "2-oxoglutarate- and Fe(II)-dependent oxygenase|C4 lysyl hydroxylase" 2005-05-18 2015-01-12 65094 ENSG00000081692 OTTHUMG00000037698 uc057qak.1 AK022579 NM_023007 "CCDS1561|CCDS59203" Q9H9V9 24486019 MGI:2144404 RGD:1307186 JMJD4 +HGNC:19355 JMJD6 arginine demethylase and lysine hydroxylase protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "PTDSR1|KIAA0585" PTDSR "phosphatidylserine receptor|jumonji domain containing 6" 2002-10-09 2007-02-16 2016-04-04 2016-10-05 23210 ENSG00000070495 OTTHUMG00000169267 uc002jso.4 AB011157 NM_015167 "CCDS42383|CCDS42384" Q6NYC1 11877474 MGI:1858910 RGD:1305395 JMJD6 604914 objectId:2892 +HGNC:34397 JMJD7 jumonji domain containing 7 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 2008-07-08 2015-09-01 100137047 ENSG00000243789 OTTHUMG00000156810 uc001zon.3 NM_001114632 CCDS45240 P0C870 MGI:3845785 RGD:2290039 JMJD7 +HGNC:34449 JMJD7-PLA2G4B JMJD7-PLA2G4B readthrough other readthrough Approved 15q15.1 15q15.1 2008-09-10 2016-10-05 8681 ENSG00000168970 OTTHUMG00000044442 uc001zoo.5 NM_005090 "CCDS32202|CCDS55961" JMJD7-PLA2G4B +HGNC:14148 JMJD8 jumonji domain containing 8 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 C16orf20 chromosome 16 open reading frame 20 2000-12-21 2008-07-28 2008-07-28 2015-08-25 339123 ENSG00000161999 OTTHUMG00000172950 uc002ciw.2 NM_001005920 CCDS45369 Q96S16 MGI:1919356 RGD:1307381 JMJD8 +HGNC:28916 JMY junction mediating and regulatory protein, p53 cofactor protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "FLJ37870|WHAMM2" Wiskott-Aldrich Syndrome protein family 14 2009-02-06 2015-04-21 133746 ENSG00000152409 OTTHUMG00000131301 uc003kfx.5 AK095189 NM_152405 CCDS4047 Q8N9B5 "10518217|22316129" MGI:1913096 RGD:1585601 JMY 604279 +HGNC:28953 JOSD1 Josephin domain containing 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 KIAA0063 MJD deubiquinating enzymes 997 2005-11-10 2015-08-25 9929 ENSG00000100221 OTTHUMG00000151030 uc003awf.4 NM_014876 CCDS13976 Q15040 7584044 MGI:1921408 RGD:1305388 JOSD1 615323 C86.004 +HGNC:28853 JOSD2 Josephin domain containing 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 SBBI54 MJD deubiquinating enzymes 997 2005-11-10 2014-11-19 126119 ENSG00000161677 OTTHUMG00000183062 uc002psp.3 AF247787 NM_138334 "CCDS12797|CCDS59413" Q8TAC2 MGI:1913374 RGD:1307305 JOSD2 615324 C86.005 +HGNC:6198 JPD juvenile periodontitis phenotype phenotype only Approved 4 04 1988-08-31 2011-02-10 +HGNC:14201 JPH1 junctophilin 1 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 JP-1 2000-12-08 2016-10-05 56704 ENSG00000104369 OTTHUMG00000164524 uc003yae.4 AB042634 XM_005251275 CCDS6217 Q9HDC5 "10891348|10949023" MGI:1891495 RGD:1308789 JPH1 605266 +HGNC:14202 JPH2 junctophilin 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 JP-2 2000-12-08 2016-10-12 57158 ENSG00000149596 OTTHUMG00000033037 uc002xli.2 AL034419 XM_006723833 "CCDS13325|CCDS13326" Q9BR39 "10891348|10949023" MGI:1891496 RGD:1305196 LRG_394|http://www.lrg-sequence.org/LRG/LRG_394 JPH2 605267 264428 +HGNC:14203 JPH3 junctophilin 3 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 "JP-3|CAGL237|HDL2|JP3" TNRC22 trinucleotide repeat containing 22 Trinucleotide repeat containing 775 2000-12-08 2002-11-13 2016-10-05 57338 ENSG00000154118 OTTHUMG00000137656 uc002fkd.5 AB042636 XM_017023483 CCDS10962 Q8WXH2 "10949023|10891348" MGI:1891497 RGD:1308416 JPH3 605268 122737 +HGNC:20156 JPH4 junctophilin 4 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 KIAA1831 JPHL1 junctophilin like 1 2002-12-18 2004-05-28 2004-05-28 2016-10-05 84502 ENSG00000092051 OTTHUMG00000028769 uc001wkr.2 AB058734 NM_032452 CCDS9603 Q96JJ6 11347906 MGI:2443113 RGD:1303170 JPH4 +HGNC:37191 JPX JPX transcript, XIST activator (non-protein coding) non-coding RNA RNA, long non-coding Approved Xq13.2 Xq13.2 "ENOX|LINC00183|DCBALD06" "just proximal to XIST|expressed neighbor of XIST" NCRNA00183 non-protein coding RNA 183 Long non-coding RNAs 788 2009-08-18 2011-04-21 2011-04-21 2014-10-22 554203 ENSG00000225470 OTTHUMG00000021840 uc004ebp.4 AV714079 NR_024582 "21029862|21254562" MGI:2180008 RGD:7726681 300832 Jpx +HGNC:6199 JRK Jrk helix-turn-helix protein protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "JH8|jerky" "jerky (mouse) homolog|jerky homolog (mouse)|Jrk homolog (mouse)" Helix-turn-helix CENPB type domain containing 533 1998-11-12 2015-06-19 2015-06-19 8629 ENSG00000234616 OTTHUMG00000160911 uc033cbj.1 AF072467 NM_003724 "CCDS75796|CCDS75797" O75564 9675132 MGI:106214 RGD:1306316 603210 168319 +HGNC:6200 JRKL JRK-like protein-coding gene gene with protein product Approved 11q21 11q21 HHMJG "erky (mouse) homolog-like|jerky homolog-like (mouse)" Helix-turn-helix CENPB type domain containing 533 1998-11-12 2014-03-28 2014-11-19 8690 ENSG00000183340 OTTHUMG00000154950 uc009ywu.5 AF004715 NM_003772 CCDS8308 Q9Y4A0 9240447 MGI:1924782 RGD:1308986 JRKL 603211 +HGNC:43670 JRKL-AS1 JRKL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q21 11q21 JRKL antisense RNA 1 (non-protein coding) 2012-01-30 2012-08-15 2012-10-12 100874053 ENSG00000255679 OTTHUMG00000167708 uc058gss.1 "AL706355|BE972282" NR_047481 +HGNC:24963 JSRP1 junctional sarcoplasmic reticulum protein 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "JP-45|FLJ32416" homolog of mouse skeletal muscle sarcoplasmic reticulum protein JP-45 2006-02-17 2014-11-19 126306 ENSG00000167476 OTTHUMG00000180413 uc002lvj.3 AK056978 NM_144616 CCDS12086 Q96MG2 12871958 MGI:1916700 RGD:1596084 JSRP1 608743 +HGNC:6201 JTB jumping translocation breakpoint protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "hJT|PAR" prostate androgen-regulated gene 2000-01-31 2016-10-05 10899 ENSG00000143543 OTTHUMG00000036590 uc001fds.4 AB016488 NM_006694 CCDS1057 O76095 10321732 MGI:1346082 RGD:2942 JTB 604671 +HGNC:39180 JTBP1 jumping translocation breakpoint pseudogene 1 pseudogene pseudogene Approved 22q13.2 22q13.2 2010-11-16 2010-11-16 100874254 ENSG00000233603 OTTHUMG00000155620 NG_032231 PGOHUM00000246593 +HGNC:6204 JUN Jun proto-oncogene, AP-1 transcription factor subunit protein-coding gene gene with protein product Approved 1p32.1 01p32.1 "c-Jun|AP-1" "v-jun avian sarcoma virus 17 oncogene homolog|jun oncogene" "Basic leucine zipper proteins|Jun transcription factor family" "506|1257" 1988-05-11 2016-05-03 2016-10-05 3725 ENSG00000177606 OTTHUMG00000008376 uc001cze.4 AY217548 NM_002228 CCDS610 P05412 3194415 MGI:96646 RGD:2943 JUN 165160 +HGNC:6205 JUNB JunB proto-oncogene, AP-1 transcription factor subunit protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "Basic leucine zipper proteins|Jun transcription factor family" "506|1257" 1990-09-10 2016-05-03 2016-05-03 3726 ENSG00000171223 OTTHUMG00000180373 uc002mvc.4 M29039 NM_002229 CCDS12280 P17275 2513129 MGI:96647 RGD:2944 JUNB 165161 +HGNC:6206 JUND JunD proto-oncogene, AP-1 transcription factor subunit protein-coding gene gene with protein product Approved 19p13.11 19p13.11 AP-1 "transcription factor jun-D|JunD-FL isoform|activator protein 1" "Basic leucine zipper proteins|Jun transcription factor family" "506|1257" 1990-09-10 2016-05-03 2016-10-11 3727 ENSG00000130522 OTTHUMG00000183355 uc002nip.4 NM_005354 CCDS32959 P17535 "2112242|1903194" MGI:96648 RGD:2945 JUND 165162 +HGNC:6207 JUP junction plakoglobin protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "DP3|PDGB|PKGB|DPIII" CTNNG catenin (cadherin-associated protein), gamma 80kDa Armadillo repeat containing 409 1991-03-04 2004-08-09 2016-10-12 3728 ENSG00000173801 OTTHUMG00000133494 uc002hxs.3 AF233882 XM_017024588 CCDS11407 P14923 "1889810|7604000" MGI:96650 RGD:620412 "Gene Connection for the Heart; Naxos disease database|http://www.fsm.it/cardmoc/|ARVD/C Genetic Variants Database|http://grenada.lumc.nl/LOVD2/ARVC/home.php?select_db=JUP|LRG_401|http://www.lrg-sequence.org/LRG/LRG_401" JUP 173325 122744 +HGNC:6209 K12T entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-02-03 +HGNC:21031 KAAG1 kidney associated antigen 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "RU2|RU2AS" 2003-05-20 2016-10-05 353219 ENSG00000146049 OTTHUMG00000014354 uc003ndz.1 AF181722 NM_181337 CCDS4551 Q9UBP8 10601354 KAAG1 608211 +HGNC:4814 KALRN kalirin, RhoGEF kinase protein-coding gene gene with protein product Approved 3q21.1-q21.2 03q21.1-q21.2 "duo|Hs.8004|TRAD|DUET|Kalirin|ARHGEF24" serine/threonine kinase with Dbl and pleckstrin homology domains HAPIP huntingtin-associated protein interacting protein (duo) "Fibronectin type III domain containing|I-set domain containing|Rho guanine nucleotide exchange factors" "555|593|722" 1999-01-13 2005-03-12 2005-03-11 2016-10-11 8997 ENSG00000160145 OTTHUMG00000125545 uc062neo.1 U94190 NM_003947 "CCDS3027|CCDS3028|CCDS82829" O60229 "9285789|10023074" MGI:2685385 RGD:621865 KALRN 604605 objectId:2050 +HGNC:19309 KANK1 KN motif and ankyrin repeat domains 1 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 "KIAA0172|KANK" ANKRD15 ankyrin repeat domain 15 "Ankyrin repeat domain containing|KN motif and ankyrin repeat domain containing" "403|623" 2003-11-18 2008-01-29 2008-01-29 2014-11-19 23189 ENSG00000107104 OTTHUMG00000019434 uc003zgl.3 AL833161 NM_015158 "CCDS6441|CCDS34976" Q14678 "12133830|17996375|19554261" MGI:2147707 RGD:1307714 KANK1 607704 160296 +HGNC:52337 KANK1P1 KN motif and ankyrin repeat domains 1 pseudogene 1 pseudogene pseudogene Approved 20p12.3 20p12.3 2016-07-25 2016-07-25 100862705 ENSG00000215589 OTTHUMG00000031815 NG_032127 PGOHUM00000296891 +HGNC:29300 KANK2 KN motif and ankyrin repeat domains 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 KIAA1518 "MXRA3|ANKRD25" "matrix-remodelling associated 3|ankyrin repeat domain 25" "Ankyrin repeat domain containing|KN motif and ankyrin repeat domain containing" "403|623" 2004-02-02 2008-01-29 2008-01-29 2014-11-19 25959 ENSG00000197256 OTTHUMG00000180799 uc002mqo.5 AK000011 NM_015493 "CCDS12255|CCDS54219" Q63ZY3 "10819331|17996375|19554261" MGI:2384568 RGD:2320289 KANK2 614610 431623 +HGNC:24796 KANK3 KN motif and ankyrin repeat domains 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ46061 ANKRD47 ankyrin repeat domain 47 "Ankyrin repeat domain containing|KN motif and ankyrin repeat domain containing" "403|623" 2005-08-01 2008-01-29 2008-01-29 2014-11-19 256949 ENSG00000186994 OTTHUMG00000182461 uc010dwa.3 AK128815 NM_198471 CCDS12199 Q6NY19 "17996375|19554261" MGI:1098615 RGD:1308853 KANK3 614611 +HGNC:27263 KANK4 KN motif and ankyrin repeat domains 4 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 KIAA0172 ANKRD38 ankyrin repeat domain 38 "Ankyrin repeat domain containing|KN motif and ankyrin repeat domain containing" "403|623" 2005-05-23 2008-01-29 2008-01-29 2014-11-18 163782 ENSG00000132854 OTTHUMG00000008971 uc001dah.5 AK096259 NM_181712 "CCDS620|CCDS81334" Q5T7N3 "17996375|19554261" MGI:3043381 RGD:1307635 KANK4 614612 +HGNC:24565 KANSL1 KAT8 regulatory NSL complex subunit 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "DKFZP727C091|MSL1v1|CENP-36|NSL1" centromere protein 36 KIAA1267 KIAA1267 2005-12-16 2012-02-20 2012-02-20 2016-04-25 284058 ENSG00000120071 uc060gju.1 BX538006 NM_015443 "CCDS11503|CCDS74084" Q7Z3B3 10574462 MGI:1923969 RGD:1311429 612452 303739 +HGNC:43740 KANSL1-AS1 KANSL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 KANSL1 antisense RNA 1 (non-protein coding) 2012-02-20 2012-08-15 2012-10-12 644246 ENSG00000214401 OTTHUMG00000178028 uc002ike.4 NR_034172 +HGNC:26310 KANSL1L KAT8 regulatory NSL complex subunit 1 like protein-coding gene gene with protein product Approved 2q34 02q34 "FLJ23861|FLJ32349|MSL1v2|KIAA1267L" KIAA1267-like C2orf67 "chromosome 2 open reading frame 67|KAT8 regulatory NSL complex subunit 1-like" 2008-02-21 2012-02-20 2015-11-12 2015-11-12 151050 ENSG00000144445 OTTHUMG00000154697 uc002vds.4 AK074441 NM_152519 "CCDS33370|CCDS77519" A0AUZ9 12477932 MGI:1915941 RGD:1590799 613833 +HGNC:26024 KANSL2 KAT8 regulatory NSL complex subunit 2 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "FLJ20436|NSL2" C12orf41 chromosome 12 open reading frame 41 2006-01-23 2011-10-31 2011-10-31 2011-10-31 54934 ENSG00000139620 OTTHUMG00000170392 uc001rrx.4 AK094528 NM_017822 CCDS44869 Q9H9L4 12477932 MGI:1916862 RGD:1303127 KANSL2 615488 +HGNC:25473 KANSL3 KAT8 regulatory NSL complex subunit 3 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "FLJ10081|Rcd1|NSL3" KIAA1310 KIAA1310 2007-11-27 2011-10-31 2011-10-31 2014-11-19 55683 ENSG00000114982 OTTHUMG00000155249 uc002swn.6 BC063792 NM_017991 CCDS46361 Q9P2N6 MGI:1918055 RGD:1309220 KANSL3 +HGNC:49510 KANTR KDM5C adjacent non-coding transcript non-coding RNA RNA, long non-coding Approved Xp11.22 Xp11.22 Spasm LINC01155 long intergenic non-protein coding RNA 1155 Long non-coding RNAs 788 2014-01-01 2014-05-20 2014-05-20 2014-07-18 102723508 ENSG00000232593 OTTHUMG00000021603 "EF565109|CF994433" NR_110456 24381249 MGI:1920247 RGD:10045415 +HGNC:6215 KARS lysyl-tRNA synthetase protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "KARS2|KARS1" lysine tRNA ligase DFNB89 deafness, autosomal recessive 89 Aminoacyl tRNA synthetases, Class II 132 1995-07-11 2016-10-12 3735 ENSG00000065427 OTTHUMG00000137609 uc002fer.4 AF285758 NM_005548 "CCDS10923|CCDS45532" Q15046 "8812440|9278442|23768514" MGI:1934754 RGD:1359653 LRG_366|http://www.lrg-sequence.org/LRG/LRG_366 KARS 601421 266184 6.1.1.6 +HGNC:39207 KARSP1 lysyl-tRNA synthetase pseudogene 1 pseudogene pseudogene Approved 13q14.11 13q14.11 2010-11-23 2010-11-23 100419558 ENSG00000229696 OTTHUMG00000016797 NG_024918 PGOHUM00000248573 +HGNC:39208 KARSP2 lysyl-tRNA synthetase pseudogene 2 pseudogene pseudogene Approved 13q34 13q34 2010-11-23 2010-11-23 100419560 ENSG00000230371 OTTHUMG00000017375 NG_024951 PGOHUM00000248686 +HGNC:39209 KARSP3 lysyl-tRNA synthetase pseudogene 3 pseudogene pseudogene Approved 16q22.1 16q22.1 2010-11-23 2014-05-06 100132079 ENSG00000262962 OTTHUMG00000177459 NG_028877 PGOHUM00000248914 +HGNC:4201 KAT2A lysine acetyltransferase 2A protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "GCN5|PCAF-b" GCN5L2 "GCN5 general control of amino-acid synthesis 5-like 2 (yeast)|K(lysine) acetyltransferase 2A" "Lysine acetyltransferases|ATAC complex|SAGA complex|GCN5 related N-acetyltransferases" "486|1058|1059|1134" 1996-12-17 2008-07-04 2016-02-12 2016-10-05 2648 ENSG00000108773 OTTHUMG00000133504 uc002hyx.3 AF029777 NM_021078 CCDS11417 Q92830 8552087 MGI:1343101 RGD:1307242 KAT2A 602301 objectId:2736 +HGNC:8638 KAT2B lysine acetyltransferase 2B protein-coding gene gene with protein product Approved 3p24.3 03p24.3 "P/CAF|GCN5|GCN5L" PCAF "p300/CBP-associated factor|K(lysine) acetyltransferase 2B" "Lysine acetyltransferases|ATAC complex|SAGA complex|GCN5 related N-acetyltransferases" "486|1058|1059|1134" 1999-02-10 2008-07-04 2016-02-12 2016-10-05 8850 ENSG00000114166 OTTHUMG00000130481 uc003cbq.4 U57316 NM_003884 CCDS2634 Q92831 "8684459|9722949" MGI:1343094 RGD:1305902 KAT2B 602303 objectId:2737 +HGNC:5275 KAT5 lysine acetyltransferase 5 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "TIP60|PLIP|cPLA2|HTATIP1|ESA1|ZC2HC5" "Tat interacting protein, 60kDa|K-acetyltransferase 5" HTATIP "HIV-1 Tat interactive protein, 60kDa|K(lysine) acetyltransferase 5" "Zinc fingers C2HC-type|Lysine acetyltransferases" "66|486" 2000-04-13 2008-07-04 2016-02-12 2016-10-05 10524 ENSG00000172977 OTTHUMG00000166617 uc001ofi.4 U74667 NM_006388 "CCDS8109|CCDS8110|CCDS31610|CCDS55771" Q92993 8607265 MGI:1932051 RGD:621061 KAT5 601409 objectId:2664 +HGNC:13013 KAT6A lysine acetyltransferase 6A protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "MOZ|ZC2HC6A" Monocytic leukemia zinc finger protein "ZNF220|RUNXBP2|MYST3" "runt-related transcription factor binding protein 2|MYST histone acetyltransferase (monocytic leukemia) 3|K(lysine) acetyltransferase 6A" "Zinc fingers C2HC-type|PHD finger proteins|Lysine acetyltransferases" "66|88|486" 1999-09-29 2011-07-21 2016-02-12 2016-10-05 7994 ENSG00000083168 OTTHUMG00000150453 uc010lxc.3 U47742 NM_006766 "CCDS6124|CCDS83290" Q92794 "8849440|8782817" MGI:2442415 RGD:1304892 601408 376575 objectId:2665 +HGNC:17582 KAT6B lysine acetyltransferase 6B protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "querkopf|qkf|Morf|MOZ2|ZC2HC6B" MOZ-related factor MYST4 "MYST histone acetyltransferase (monocytic leukemia) 4|K(lysine) acetyltransferase 6B" "Zinc fingers C2HC-type|PHD finger proteins|Lysine acetyltransferases" "66|88|486" 2003-06-03 2011-07-21 2016-02-12 2016-02-12 23522 ENSG00000156650 OTTHUMG00000018509 uc001jwn.3 AF113514 NM_012330 "CCDS7345|CCDS58084|CCDS58085" Q8WYB5 "9205841|10497217" MGI:1858746 RGD:1566399 605880 285156 objectId:2666 +HGNC:17016 KAT7 lysine acetyltransferase 7 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "HBOA|HBO1|ZC2HC7" histone acetyltransferase binding to ORC1 MYST2 "MYST histone acetyltransferase 2|K(lysine) acetyltransferase 7" "Zinc fingers C2HC-type|Lysine acetyltransferases" "66|486" 2003-06-03 2011-07-21 2016-02-12 2016-10-05 11143 ENSG00000136504 OTTHUMG00000161770 uc002ipm.4 AF074606 NM_007067 "CCDS11554|CCDS56035|CCDS56036|CCDS56037|CCDS56038" O95251 "10438470|10930412" MGI:2182799 RGD:727966 609880 objectId:2667 2.3.1.48 +HGNC:17933 KAT8 lysine acetyltransferase 8 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "MOF|FLJ14040|hMOF|ZC2HC8" MYST1 "MYST histone acetyltransferase 1|K(lysine) acetyltransferase 8" "Zinc fingers C2HC-type|Lysine acetyltransferases" "66|486" 2002-08-06 2011-07-21 2016-02-12 2016-10-05 84148 ENSG00000103510 OTTHUMG00000132410 uc002eay.4 AF217501 NM_032188 "CCDS10706|CCDS45468" Q9H7Z6 10786633 MGI:1915023 RGD:1311512 KAT8 609912 objectId:2668 2.3.1.48 +HGNC:15904 KAT14 lysine acetyltransferase 14 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "CRP2BP|dJ717M23.1|PRO1194|ATAC2" "cysteine rich protein 2 binding protein|ATAC component 2 homolog (Drosophila)" CSRP2BP CSRP2 binding protein "ATAC complex|GCN5 related N-acetyltransferases" "1058|1134" 2001-06-21 2016-04-25 2016-04-25 2016-04-25 57325 ENSG00000149474 OTTHUMG00000031962 uc021wbb.2 AF252257 NM_020536 CCDS13133 Q9H8E8 "9286703|10924333|19103755" MGI:1917264 RGD:1309538 +HGNC:6216 KATNA1 katanin catalytic subunit A1 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "katanin p60 (ATPase-containing) subunit A 1|katanin p60 (ATPase containing) subunit A 1" AAA ATPases 413 1999-08-25 2016-03-21 2016-10-05 11104 ENSG00000186625 OTTHUMG00000015787 uc003qms.4 AF056022 NM_007044 "CCDS5217|CCDS56456" O75449 9658175 MGI:1344353 RGD:1303062 KATNA1 606696 +HGNC:28361 KATNAL1 katanin catalytic subunit A1 like 1 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 MGC2599 "katanin p60 subunit A-like 1|katanin p60 subunit A like 1|katanin catalytic subunit A like 1" AAA ATPases 413 2004-03-16 2016-03-21 2016-03-21 84056 ENSG00000102781 OTTHUMG00000016665 uc001ust.5 AK097423 NM_032116 CCDS31956 Q9BW62 19302785 MGI:2387638 RGD:1359252 KATNAL1 614764 +HGNC:25387 KATNAL2 katanin catalytic subunit A1 like 2 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "MGC33211|DKFZP667C165" "katanin p60 subunit A-like 2|katanin p60 subunit A like 2|katanin catalytic subunit A like 2" AAA ATPases 413 2005-01-14 2016-03-21 2016-03-21 83473 ENSG00000167216 OTTHUMG00000179408 uc060ows.1 BC034999 NM_031303 CCDS32828 Q8IYT4 12477932 MGI:1924234 RGD:1564708 KATNAL2 614697 +HGNC:6217 KATNB1 katanin regulatory subunit B1 protein-coding gene gene with protein product Approved 16q21 16q21 "katanin p80 (WD40-containing) subunit B 1|katanin p80 (WD repeat containing) subunit B 1" WD repeat domain containing 362 1999-08-25 2016-03-21 2016-10-05 10300 ENSG00000140854 OTTHUMG00000133467 uc002eml.2 AF052432 XM_006721121 CCDS10788 Q9BVA0 9568719 MGI:1921437 RGD:1311256 KATNB1 602703 448624 +HGNC:26199 KATNBL1 katanin regulatory subunit B1 like 1 protein-coding gene gene with protein product Approved 15q14 15q14 FLJ22557 C15orf29 "chromosome 15 open reading frame 29|katanin p80 subunit B-like 1" 2004-07-02 2012-09-27 2016-03-21 2016-10-05 79768 ENSG00000134152 OTTHUMG00000129368 uc001zhp.4 AL136908 NM_024713 CCDS10034 Q9H079 11230166 MGI:1919675 RGD:1582771 616235 +HGNC:39724 KATNBL1P1 katanin regulatory subunit B1 like 1 pseudogene 1 pseudogene pseudogene Approved 13q12.2 13q12.2 katanin p80 subunit B-like 1 pseudogene 1 2013-08-19 2016-03-21 2016-03-21 100420919 ENSG00000271026 OTTHUMG00000184858 NG_024907 PGOHUM00000292114 +HGNC:49052 KATNBL1P2 katanin regulatory subunit B1 like 1 pseudogene 2 pseudogene pseudogene Approved 1p21.3 01p21.3 katanin p80 subunit B-like 1 pseudogene 2 2013-08-19 2016-03-21 2016-03-21 100130235 ENSG00000232857 OTTHUMG00000010704 NG_022729 PGOHUM00000295761 +HGNC:49053 KATNBL1P3 katanin regulatory subunit B1 like 1 pseudogene 3 pseudogene pseudogene Approved 18p11.32 18p11.32 katanin p80 subunit B-like 1 pseudogene 3 2013-08-19 2016-03-21 2016-03-21 100420946 ENSG00000235422 OTTHUMG00000178276 NG_026267 PGOHUM00000294566 +HGNC:49054 KATNBL1P4 katanin regulatory subunit B1 like 1 pseudogene 4 pseudogene pseudogene Approved 5q11.2 05q11.2 katanin p80 subunit B-like 1 pseudogene 4 2013-08-19 2016-03-21 2016-03-21 100128982 ENSG00000249270 OTTHUMG00000160384 NG_021880 PGOHUM00000300946 +HGNC:49055 KATNBL1P5 katanin regulatory subunit B1 like 1 pseudogene 5 pseudogene pseudogene Approved 6p22.2 06p22.2 katanin p80 subunit B-like 1 pseudogene 5 2013-08-19 2016-03-21 2016-03-21 100420841 ENSG00000271108 OTTHUMG00000184546 NG_025906 PGOHUM00000301685 +HGNC:49056 KATNBL1P6 katanin regulatory subunit B1 like 1 pseudogene 6 pseudogene pseudogene Approved 6q24.3 06q24.3 katanin p80 subunit B-like 1 pseudogene 6 2013-08-19 2016-03-21 2016-03-21 729176 ENSG00000228283 OTTHUMG00000015759 NR_003954 PGOHUM00000301588 +HGNC:25460 KAZALD1 Kazal type serine peptidase inhibitor domain 1 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "FKSG40|FKSG28" "Kazal-type serine protease inhibitor domain 1|Kazal-type serine peptidase inhibitor domain 1" I-set domain containing 593 2004-04-21 2016-02-01 2016-10-05 81621 ENSG00000107821 OTTHUMG00000018918 uc001ksr.4 AF333487 NM_030929 CCDS7509 Q96I82 12975309 MGI:2147606 RGD:1310698 KAZALD1 609208 +HGNC:29173 KAZN kazrin, periplakin interacting protein protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "KIAA1026|KAZRIN|FLJ43806" Sterile alpha motif domain containing 760 2011-01-31 2011-01-31 2014-11-19 23254 ENSG00000189337 OTTHUMG00000002042 uc001avm.5 AY505119 NM_001017999 "CCDS30604|CCDS41267|CCDS152|CCDS41268" Q674X7 "15337775|18840647" MGI:1918779 RGD:1359147 KAZN +HGNC:21751 KBTBD2 kelch repeat and BTB domain containing 2 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 DKFZP566C134 BKLHD1 "BTB and kelch domain containing 1|kelch repeat and BTB (POZ) domain containing 2" BTB domain containing 861 2003-07-22 2003-12-12 2016-02-12 2016-02-12 25948 ENSG00000170852 OTTHUMG00000152984 uc003tdb.3 AB040922 XM_291224 CCDS34614 Q8IY47 10819331 MGI:2384811 RGD:1310317 KBTBD2 +HGNC:22934 KBTBD3 kelch repeat and BTB domain containing 3 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 BKLHD3 "BTB and kelch domain containing 3|kelch repeat and BTB (POZ) domain containing 3" BTB domain containing 861 2003-07-23 2003-12-17 2016-02-12 2016-02-12 143879 ENSG00000182359 OTTHUMG00000166251 uc001pjb.4 AK055247 NM_152433 "CCDS8334|CCDS81621" Q8NAB2 MGI:1916399 RGD:1310895 KBTBD3 +HGNC:23761 KBTBD4 kelch repeat and BTB domain containing 4 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "FLJ10450|HSPC252" BKLHD4 "BTB and kelch domain containing 4|kelch repeat and BTB (POZ) domain containing 4" BTB domain containing 861 2003-12-08 2003-12-17 2016-02-12 2016-02-12 55709 ENSG00000123444 OTTHUMG00000166894 uc001nfx.4 AF151086 NM_016506 "CCDS7940|CCDS44594|CCDS81566" Q9NVX7 11042152 MGI:1914386 RGD:1310234 KBTBD4 +HGNC:25340 KBTBD6 kelch repeat and BTB domain containing 6 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 DKFZp547E1912 kelch repeat and BTB (POZ) domain containing 6 BTB domain containing 861 2003-12-16 2016-02-12 2016-10-05 89890 ENSG00000165572 OTTHUMG00000016786 uc001uxu.2 AK056633 NM_152903 CCDS9376 Q86V97 12477932 MGI:3643058 RGD:1305086 KBTBD6 +HGNC:25266 KBTBD7 kelch repeat and BTB domain containing 7 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 DKFZP434E2318 kelch repeat and BTB (POZ) domain containing 7 BTB domain containing 861 2003-12-16 2016-02-12 2016-10-05 84078 ENSG00000120696 OTTHUMG00000016789 uc001uxw.2 AL136782 NM_032138 CCDS9377 Q8WVZ9 11230166 MGI:2685141 RGD:6501695 KBTBD7 +HGNC:30691 KBTBD8 kelch repeat and BTB domain containing 8 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "TA-KRP|KIAA1842" T-cell activation kelch repeat protein kelch repeat and BTB (POZ) domain containing 8 BTB domain containing 861 2005-08-22 2016-02-12 2016-10-05 84541 ENSG00000163376 OTTHUMG00000158779 uc003dmy.4 AF385438 NM_032505 CCDS2906 Q8NFY9 11347906 MGI:2661430 RGD:1563166 KBTBD8 616607 +HGNC:29104 KBTBD11 kelch repeat and BTB domain containing 11 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 "KIAA0711|KLHDC7C" kelch repeat and BTB (POZ) domain containing 11 BTB domain containing 861 2005-10-06 2016-02-12 2016-02-12 9920 ENSG00000176595 OTTHUMG00000163629 uc003wpw.5 AB018254 NM_014867 CCDS34795 O94819 MGI:1922151 RGD:1563576 KBTBD11 +HGNC:49147 KBTBD11-OT1 KBTBD11 overlapping transcript 1 non-coding RNA RNA, long non-coding Approved 8p23.3 08p23.3 KBTBD11 overlapping transcript 1 (non-protein coding) 2013-09-19 2014-06-02 2014-06-02 104266957 ENSG00000253696 OTTHUMG00000163627 BX104191 NR_126346 +HGNC:25731 KBTBD12 kelch repeat and BTB domain containing 12 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 FLJ46299 KLHDC6 "kelch domain containing 6|kelch repeat and BTB (POZ) domain containing 12" BTB domain containing 861 2005-04-07 2009-10-01 2016-02-12 2016-02-12 166348 ENSG00000187715 OTTHUMG00000150508 uc062nne.1 NM_207335 CCDS33848 Q3ZCT8 MGI:1918481 RGD:1585999 KBTBD12 +HGNC:37227 KBTBD13 kelch repeat and BTB domain containing 13 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "hCG_1645727|NEM6" nemaline myopathy type 6 kelch repeat and BTB (POZ) domain containing 13 BTB domain containing 861 2010-01-25 2016-02-12 2016-10-12 390594 ENSG00000234438 OTTHUMG00000172424 uc010uis.3 NM_001101362 CCDS45281 C9JR72 "21109227|22542517" MGI:1921742 RGD:1311093 LRG_682|http://www.lrg-sequence.org/LRG/LRG_682 KBTBD13 613727 258542 +HGNC:20589 KCMF1 potassium channel modulatory factor 1 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "DEBT91|PCMF|DKFZP434L1021|ZZZ1" Zinc fingers ZZ-type 91 2003-08-06 2014-11-18 56888 ENSG00000176407 OTTHUMG00000153004 uc002sox.5 AF155652 NM_020122 CCDS46350 Q9P0J7 MGI:1921537 RGD:1591490 KCMF1 614719 +HGNC:6218 KCNA1 potassium voltage-gated channel subfamily A member 1 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 "Kv1.1|RBK1|HUK1|MBK1" AEMK potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia with myokymia) Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-05 3736 ENSG00000111262 OTTHUMG00000044398 uc001qnh.4 L02750 NM_000217 CCDS8535 Q09470 "1349297|8821794|16382104" MGI:96654 RGD:2949 KCNA1 176260 122756 objectId:538 +HGNC:6220 KCNA2 potassium voltage-gated channel subfamily A member 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "Kv1.2|HK4" potassium voltage-gated channel, shaker-related subfamily, member 2 Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-05 3737 ENSG00000177301 OTTHUMG00000011567 uc057jgb.2 L02752 NM_004974 "CCDS827|CCDS55625" P16389 16382104 MGI:96659 RGD:2950 KCNA2 176262 446524 objectId:539 +HGNC:6221 KCNA3 potassium voltage-gated channel subfamily A member 3 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "Kv1.3|MK3|HLK3|HPCN3" "potassium voltage-gated channel, shaker-related subfamily, member 3|potassium channel" Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-02-04 3738 ENSG00000177272 OTTHUMG00000034493 uc001dzv.3 L23499 NM_002232 CCDS828 P22001 "2251283|16382104" MGI:96660 RGD:2951 KCNA3 176263 objectId:540 +HGNC:6222 KCNA4 potassium voltage-gated channel subfamily A member 4 protein-coding gene gene with protein product Approved 11p14.1 11p14.1 "Kv1.4|HK1|HPCN2" KCNA4L "potassium voltage-gated channel, shaker-related subfamily, member 4-like|potassium voltage-gated channel, shaker-related subfamily, member 4" Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-11 3739 ENSG00000182255 OTTHUMG00000166144 uc001msk.4 M55514 NM_002233 CCDS41629 P22459 "2263489|16382104" MGI:96661 RGD:2952 KCNA4 176266 objectId:541 +HGNC:6224 KCNA5 potassium voltage-gated channel subfamily A member 5 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 "Kv1.5|HK2|HPCN1" potassium voltage-gated channel, shaker-related subfamily, member 5 Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-11 3741 ENSG00000130037 OTTHUMG00000168232 uc001qni.5 M83254 NM_002234 CCDS8536 P22460 16382104 MGI:96662 RGD:2953 KCNA5 176267 168086 objectId:542 +HGNC:6225 KCNA6 potassium voltage-gated channel subfamily A member 6 protein-coding gene gene with protein product Approved 12p13 12p13 "Kv1.6|HBK2|PPP1R96" protein phosphatase 1, regulatory subunit 96 potassium voltage-gated channel, shaker-related subfamily, member 6 "Potassium voltage-gated channels|Protein phosphatase 1 regulatory subunits" "274|694" 1991-08-13 2016-02-04 2016-02-04 3742 ENSG00000151079 OTTHUMG00000168225 uc058kap.1 X17622 NM_002235 CCDS8534 P17658 16382104 MGI:96663 RGD:62083 KCNA6 176257 objectId:543 +HGNC:6226 KCNA7 potassium voltage-gated channel subfamily A member 7 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "Kv1.7|HAK6" potassium voltage-gated channel, shaker-related subfamily, member 7 Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-11 3743 ENSG00000104848 OTTHUMG00000183343 uc002pmg.3 AF315818 NM_031886 CCDS12755 Q96RP8 16382104 MGI:96664 RGD:1309632 KCNA7 176268 objectId:544 +HGNC:6219 KCNA10 potassium voltage-gated channel subfamily A member 10 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 Kv1.8 potassium voltage-gated channel, shaker-related subfamily, member 10 Potassium voltage-gated channels 274 1997-02-19 2016-02-04 2016-10-05 3744 ENSG00000143105 OTTHUMG00000022785 uc001dzt.2 U96110 NM_005549 CCDS826 Q16322 16382104 MGI:3037820 RGD:1304667 KCNA10 602420 objectId:545 +HGNC:6228 KCNAB1 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding gene gene with protein product Approved 3q25.31 03q25.31 "AKR6A3|KCNA1B|hKvBeta3|Kvb1.3|hKvb3" K+ channel Beta1a chain potassium voltage-gated channel, shaker-related subfamily, beta member 1 "Aldo-keto reductases|Potassium voltage-gated channel regulatory subunits" "399|858" 1998-10-13 2016-02-04 2016-10-05 7881 ENSG00000169282 OTTHUMG00000158552 uc011bon.2 U33428 NM_003471 "CCDS3174|CCDS3175|CCDS33882|CCDS77844|CCDS77845" Q14722 "8838324|7499366" MGI:109155 RGD:61827 KCNAB1 601141 +HGNC:40316 KCNAB1-AS1 KCNAB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.31 03q25.31 KCNAB1 antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874084 ENSG00000242370 OTTHUMG00000158616 uc031scd.1 NR_046618 +HGNC:40315 KCNAB1-AS2 KCNAB1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q25.31 03q25.31 KCNAB1 antisense RNA 2 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874083 ENSG00000240596 OTTHUMG00000158548 uc031scc.1 NR_046617 +HGNC:6229 KCNAB2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "AKR6A5|KCNA2B|HKvbeta2.1|HKvbeta2.2" "potassium voltage-gated channel, shaker-related subfamily, beta member 2|potassium channel, voltage gated subfamily A regulatory beta subunit 2" "Aldo-keto reductases|Potassium voltage-gated channel regulatory subunits" "399|858" 1998-10-13 2016-02-04 2016-10-05 8514 ENSG00000069424 OTTHUMG00000000795 uc009vlv.3 U33429 NM_172130 "CCDS55|CCDS56|CCDS55570|CCDS55571" Q13303 8838324 MGI:109239 RGD:61828 KCNAB2 601142 311145 +HGNC:6230 KCNAB3 potassium voltage-gated channel subfamily A regulatory beta subunit 3 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "AKR6A9|KCNA3B" "potassium voltage-gated channel, shaker-related subfamily, beta member 3|potassium channel, voltage gated subfamily A regulatory beta subunit 3" "Aldo-keto reductases|Potassium voltage-gated channel regulatory subunits" "399|858" 1999-03-02 2016-02-04 2016-02-04 9196 ENSG00000170049 OTTHUMG00000108170 uc002gjm.2 AF016411 NM_004732 CCDS11124 O43448 9857044 MGI:1336208 RGD:61830 KCNAB3 604111 +HGNC:6231 KCNB1 potassium voltage-gated channel subfamily B member 1 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 Kv2.1 potassium voltage-gated channel, Shab-related subfamily, member 1 Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-05 3745 ENSG00000158445 OTTHUMG00000033051 uc002xur.3 AF026005 NM_004975 CCDS13418 Q14721 "7774931|16382104" MGI:96666 RGD:2954 KCNB1 600397 413979 objectId:546 +HGNC:6232 KCNB2 potassium voltage-gated channel subfamily B member 2 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 Kv2.2 potassium voltage-gated channel, Shab-related subfamily, member 2 Potassium voltage-gated channels 274 1999-06-09 2016-02-04 2016-10-05 9312 ENSG00000182674 OTTHUMG00000164498 uc003xzb.3 U69962 NM_004770 CCDS6209 Q92953 "9612272|16382104" MGI:99632 RGD:621349 KCNB2 607738 objectId:547 +HGNC:6233 KCNC1 potassium voltage-gated channel subfamily C member 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 Kv3.1 "potassium voltage-gated channel, Shaw-related subfamily, member 1|potassium channel, voltage gated Shaw related subfamily C, member 1" Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-05 3746 ENSG00000129159 OTTHUMG00000166359 uc009yhc.2 M96747 NM_004976 "CCDS7827|CCDS44547" P48547 "8449507|16382104" MGI:96667 RGD:2955 KCNC1 176258 444112 objectId:548 +HGNC:6234 KCNC2 potassium voltage-gated channel subfamily C member 2 protein-coding gene gene with protein product Approved 12q21.1 12q21.1 Kv3.2 "potassium voltage-gated channel, Shaw-related subfamily, member 2|potassium channel, voltage gated Shaw related subfamily C, member 2" Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-11 3747 ENSG00000166006 OTTHUMG00000169717 uc001sxg.3 AF268896 NM_153748 "CCDS9005|CCDS9006|CCDS9007|CCDS58255|CCDS58256|CCDS58257" Q96PR1 "8111118|16382104" MGI:96668 RGD:628829 KCNC2 176256 objectId:549 +HGNC:6235 KCNC3 potassium voltage-gated channel subfamily C member 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 Kv3.3 SCA13 "spinocerebellar ataxia 13|potassium voltage-gated channel, Shaw-related subfamily, member 3|potassium channel, voltage gated Shaw related subfamily C, member 3" Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-12 3748 ENSG00000131398 OTTHUMG00000044580 uc002pru.1 AB208930 NM_004977 CCDS12793 Q14003 "1740329|8111118|16382104" MGI:96669 RGD:621358 LRG_668|http://www.lrg-sequence.org/LRG/LRG_668 KCNC3 176264 159737 objectId:550 +HGNC:6236 KCNC4 potassium voltage-gated channel subfamily C member 4 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "Kv3.4|HKSHIIIC" C1orf30 "chromosome 1 open reading frame 30|potassium voltage-gated channel, Shaw-related subfamily, member 4|potassium channel, voltage gated Shaw related subfamily C, member 4" Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-10-05 3749 ENSG00000116396 OTTHUMG00000011037 uc001dzh.4 BC101769 NM_001039574 "CCDS821|CCDS44193" Q03721 "1920536|1740329|16382104" MGI:96670 RGD:1589169 KCNC4 176265 objectId:551 +HGNC:39958 KCNC4-AS1 KCNC4 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 1p13.3 01p13.3 "KCNC4 antisense RNA 1 (non-protein coding)|KCNC4 antisense RNA 1" 2011-04-18 2012-10-17 2014-11-18 100873974 ENSG00000224965 OTTHUMG00000040850 uc031ule.2 NR_046546 +HGNC:6237 KCND1 potassium voltage-gated channel subfamily D member 1 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 Kv4.1 "potassium voltage-gated channel, Shal-related subfamily, member 1|potassium channel, voltage gated Shal related subfamily D, member 1" Potassium voltage-gated channels 274 1991-08-13 2016-02-04 2016-02-04 3750 ENSG00000102057 OTTHUMG00000024127 uc004dlx.2 AF166003 NM_004979 CCDS14314 Q9NSA2 "10729221|16382104" MGI:96671 RGD:621364 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KCND1 KCND1 300281 objectId:552 +HGNC:6238 KCND2 potassium voltage-gated channel subfamily D member 2 protein-coding gene gene with protein product Approved 7q31.31 07q31.31 "Kv4.2|RK5|KIAA1044" potassium voltage-gated channel, Shal-related subfamily, member 2 Potassium voltage-gated channels 274 1992-10-05 2016-02-04 2016-10-05 3751 ENSG00000184408 OTTHUMG00000156989 uc003vjj.2 AJ010969 NM_012281 CCDS5776 Q9NZV8 "10551270|16382104" MGI:102663 RGD:68393 KCND2 605410 objectId:553 +HGNC:6239 KCND3 potassium voltage-gated channel subfamily D member 3 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "Kv4.3|KSHIVB" "SCA22|SCA19" "spinocerebellar ataxia 22|spinocerebellar ataxia 19|potassium voltage-gated channel, Shal-related subfamily, member 3" Potassium voltage-gated channels 274 1992-10-05 2016-02-04 2016-10-12 3752 ENSG00000171385 OTTHUMG00000011989 uc001ebv.2 AF048713 NM_172198 "CCDS843|CCDS844" Q9UK17 "10942109|16382104|23280837" MGI:1928743 RGD:68394 LRG_445|http://www.lrg-sequence.org/LRG/LRG_445 KCND3 605411 302951 objectId:554 +HGNC:40317 KCND3-AS1 KCND3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p13.2 01p13.2 KCND3 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100873995 ENSG00000237556 OTTHUMG00000011993 uc057jjx.1 NR_046619 +HGNC:41350 KCND3-IT1 KCND3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p13.2 01p13.2 KCND3 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874295 ENSG00000232558 OTTHUMG00000011990 uc031ulu.1 NR_046783 +HGNC:6240 KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 "minK|ISK|JLNS2|LQT5" "potassium voltage-gated channel, Isk-related family, member 1|potassium channel, voltage gated subfamily E regulatory beta subunit 1" Potassium voltage-gated channel regulatory subunits 858 1991-08-13 2016-02-04 2016-10-12 3753 ENSG00000180509 OTTHUMG00000086236 uc010gmr.4 L28168 XM_017028342 CCDS13636 P15382 8432548 MGI:96673 RGD:2956 "Gene Connection for the Heart|http://www.fsm.it/cardmoc/|KCNE1 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=KCNE1|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=KCNE1|LRG_290|http://www.lrg-sequence.org/LRG/LRG_290" KCNE1 176261 122763 +HGNC:52280 KCNE1B potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding gene gene with protein product Approved 21p11.2 21p11.2 potassium channel, voltage gated subfamily E regulatory beta subunit 1B Potassium voltage-gated channel regulatory subunits 858 2015-12-15 2016-02-04 2016-02-04 102723475 ENSG00000276289 OTTHUMG00000189416 NM_001330065 CCDS82655 A0A087WTH5 MGI:96673 +HGNC:6242 KCNE2 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "MiRP1|LQT6" "potassium voltage-gated channel, Isk-related family, member 2|potassium channel, voltage gated subfamily E regulatory beta subunit 2" Potassium voltage-gated channel regulatory subunits 858 1999-05-11 2016-02-04 2016-10-12 9992 ENSG00000159197 OTTHUMG00000086189 uc002ytt.2 AF071002 NM_172201 CCDS13635 Q9Y6J6 10219239 MGI:1891123 RGD:621383 "Gene Connection for the Heart|http://www.fsm.it/cardmoc/|KCNE2 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=KCNE2|LRG_291|http://www.lrg-sequence.org/LRG/LRG_291" KCNE2 603796 122770 +HGNC:6243 KCNE3 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "MiRP2|HOKPP" "potassium voltage-gated channel, Isk-related family, member 3|potassium channel, voltage gated subfamily E regulatory beta subunit 3" Potassium voltage-gated channel regulatory subunits 858 1999-05-11 2016-02-04 2016-10-12 10008 ENSG00000175538 OTTHUMG00000165641 uc001ovc.4 AF076531 NM_005472 CCDS8232 Q9Y6H6 10219239 MGI:1891124 RGD:621384 LRG_439|http://www.lrg-sequence.org/LRG/LRG_439 KCNE3 604433 122773 +HGNC:6244 KCNE4 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 MiRP3 "potassium voltage-gated channel, Isk-related family, member 4|potassium channel, voltage gated subfamily E regulatory beta subunit 4" Potassium voltage-gated channel regulatory subunits 858 1999-05-11 2016-02-04 2016-04-25 23704 ENSG00000152049 OTTHUMG00000133161 uc002vnl.7 AY065987 NM_080671 CCDS2456 Q8WWG9 "10219239|12670483" MGI:1891125 RGD:1302957 KCNE4 607775 +HGNC:6241 KCNE5 potassium voltage-gated channel subfamily E regulatory subunit 5 protein-coding gene gene with protein product Approved Xq23 Xq23 KCNE1L "potassium voltage-gated channel, Isk-related family, member 1-like|potassium channel, voltage gated subfamily E regulatory beta subunit 5" Potassium voltage-gated channel regulatory subunits 858 1999-11-16 2015-01-16 2016-02-04 2016-10-12 23630 ENSG00000176076 OTTHUMG00000022189 AJ012743 NM_012282 CCDS14547 Q9UJ90 "10493825|12324418" MGI:1913490 RGD:1583501 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KCNE1L|LRG_1083|http://www.lrg-sequence.org/LRG/LRG_1083" 300328 122768 +HGNC:6246 KCNF1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "Kv5.1|kH1|IK8" KCNF "potassium voltage-gated channel, subfamily F, member 1|potassium channel, voltage gated subfamily F, member 1" Potassium voltage-gated channels 274 1993-03-22 2016-02-04 2016-10-05 3754 ENSG00000162975 OTTHUMG00000119054 uc002rax.3 AF033382 NM_002236 CCDS1676 Q9H3M0 "9434767|16382104" MGI:2687399 RGD:631414 KCNF1 603787 objectId:555 +HGNC:6248 KCNG1 potassium voltage-gated channel modifier subfamily G member 1 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "Kv6.1|kH2|K13" KCNG potassium voltage-gated channel, subfamily G, member 1 Potassium voltage-gated channels 274 1993-03-22 2016-02-04 2016-10-05 3755 ENSG00000026559 OTTHUMG00000032745 uc002xwa.5 AF033383 NM_002237 CCDS13436 Q9UIX4 "9434767|16382104" MGI:3616086 RGD:631416 KCNG1 603788 objectId:556 +HGNC:6249 KCNG2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding gene gene with protein product Approved 18q23 18q23 "Kv6.2|KCNF2" potassium voltage-gated channel, subfamily G, member 2 Potassium voltage-gated channels 274 1999-12-21 2016-02-04 2016-02-04 26251 ENSG00000178342 OTTHUMG00000044541 uc010xfl.2 AJ011021 NM_012283 CCDS12019 Q9UJ96 "10551266|16382104" MGI:3694646 RGD:1309521 KCNG2 605696 objectId:557 +HGNC:18306 KCNG3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding gene gene with protein product Approved 2p21 02p21 Kv6.3 potassium voltage-gated channel, subfamily G, member 3 Potassium voltage-gated channels 274 2002-04-10 2016-02-04 2016-02-04 170850 ENSG00000171126 OTTHUMG00000128604 uc002rsn.3 AB070604 NM_172344 "CCDS1809|CCDS42674" Q8TAE7 "11852086|16382104" MGI:2663923 RGD:628832 KCNG3 606767 objectId:558 +HGNC:19697 KCNG4 potassium voltage-gated channel modifier subfamily G member 4 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 Kv6.4 potassium voltage-gated channel, subfamily G, member 4 Potassium voltage-gated channels 274 2002-11-20 2016-02-04 2016-02-04 93107 ENSG00000168418 OTTHUMG00000137638 uc010voc.3 AF348984 NM_172347 CCDS10945 Q8TDN1 "12060745|16382104" MGI:1913983 RGD:1308553 KCNG4 607603 objectId:559 +HGNC:6250 KCNH1 potassium voltage-gated channel subfamily H member 1 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "Kv10.1|eag|h-eag|eag1" potassium voltage-gated channel, subfamily H (eag-related), member 1 Potassium voltage-gated channels 274 1993-03-22 2016-02-04 2016-02-04 3756 ENSG00000143473 OTTHUMG00000036309 uc001hib.3 AJ001366 NM_002238 "CCDS1496|CCDS31015" O95259 "9738473|16382104" MGI:1341721 RGD:68398 KCNH1 603305 431495 objectId:570 +HGNC:41351 KCNH1-IT1 KCNH1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q32.2 01q32.2 KCNH1 intronic transcript 1 (non-protein coding) 2011-05-23 2015-02-25 2015-02-25 100874296 ENSG00000234233 OTTHUMG00000046162 uc057pdd.1 +HGNC:6251 KCNH2 potassium voltage-gated channel subfamily H member 2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "Kv11.1|HERG|erg1" LQT2 potassium voltage-gated channel, subfamily H (eag-related), member 2 Potassium voltage-gated channels 274 1993-03-22 2016-02-04 2016-10-12 3757 ENSG00000055118 OTTHUMG00000158341 uc003wic.4 U04270 NM_000238 "CCDS5910|CCDS5911" Q12809 "18616963|7842012|8159766|16382104" MGI:1341722 RGD:621414 "Gene Connection for the Heart|http://www.fsm.it/cardmoc/|KCNH2 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=KCNH2|LRG_288|http://www.lrg-sequence.org/LRG/LRG_288" KCNH2 152427 122777 objectId:572 +HGNC:6252 KCNH3 potassium voltage-gated channel subfamily H member 3 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "Kv12.2|BEC1|elk2" potassium voltage-gated channel, subfamily H (eag-related), member 3 Potassium voltage-gated channels 274 1999-12-14 2016-02-04 2016-10-11 23416 ENSG00000135519 OTTHUMG00000169517 uc001ruh.2 AB022696 NM_012284 CCDS8786 Q9ULD8 "10455180|16382104" MGI:1341723 RGD:71070 KCNH3 604527 objectId:576 +HGNC:6253 KCNH4 potassium voltage-gated channel subfamily H member 4 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "Kv12.3|elk1" potassium voltage-gated channel, subfamily H (eag-related), member 4 Potassium voltage-gated channels 274 1999-12-14 2016-02-04 2016-10-11 23415 ENSG00000089558 OTTHUMG00000180106 uc002hzb.3 AB022698 NM_012285 CCDS11420 Q9UQ05 "10455180|16382104" MGI:2156184 RGD:621415 KCNH4 604528 objectId:577 +HGNC:6254 KCNH5 potassium voltage-gated channel subfamily H member 5 protein-coding gene gene with protein product Approved 14q23.2 14q23.2 "Kv10.2|H-EAG2|eag2" potassium voltage-gated channel, subfamily H (eag-related), member 5 Potassium voltage-gated channels 274 2000-02-02 2016-02-04 2016-10-05 27133 ENSG00000140015 OTTHUMG00000029041 uc001xfx.5 U69185 NM_139318 "CCDS9756|CCDS45122" Q8NCM2 "9738473|16382104" MGI:3584508 RGD:621417 KCNH5 605716 objectId:571 +HGNC:18862 KCNH6 potassium voltage-gated channel subfamily H member 6 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "Kv11.2|erg2|HERG2" potassium voltage-gated channel, subfamily H (eag-related), member 6 Potassium voltage-gated channels 274 2002-07-10 2016-02-04 2016-02-04 81033 ENSG00000173826 OTTHUMG00000178901 uc002jay.5 AF311913 NM_030779 "CCDS11638|CCDS11639|CCDS62290" Q9H252 16382104 MGI:2684139 RGD:620304 KCNH6 608168 objectId:573 +HGNC:18863 KCNH7 potassium voltage-gated channel subfamily H member 7 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "Kv11.3|HERG3|erg3" potassium voltage-gated channel, subfamily H (eag-related), member 7 Potassium voltage-gated channels 274 2002-07-10 2016-02-04 2016-10-05 90134 ENSG00000184611 OTTHUMG00000132069 uc002uch.3 AF032897 NM_033272 "CCDS2219|CCDS2220" Q9NS40 16382104 MGI:2159566 RGD:621112 KCNH7 608169 objectId:574 +HGNC:18864 KCNH8 potassium voltage-gated channel subfamily H member 8 protein-coding gene gene with protein product Approved 3p24.3 03p24.3 "Kv12.1|elk3" potassium voltage-gated channel, subfamily H (eag-related), member 8 Potassium voltage-gated channels 274 2002-07-10 2016-02-04 2016-02-04 131096 ENSG00000183960 OTTHUMG00000129891 uc003cbk.2 AY053503 NM_144633 CCDS2632 Q96L42 16382104 MGI:2445160 RGD:2549 KCNH8 608260 objectId:575 +HGNC:15521 KCNIP1 potassium voltage-gated channel interacting protein 1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 KCHIP1 Kv channel interacting protein 1 "Potassium voltage-gated channel regulatory subunits|EF-hand domain containing" "858|863" 2001-05-23 2016-02-04 2016-10-05 30820 ENSG00000182132 OTTHUMG00000130442 uc003map.5 AF199597 NM_001278339 "CCDS34285|CCDS34286|CCDS4374|CCDS64312|CCDS64313" Q9NZI2 10676964 MGI:1917607 RGD:70886 KCNIP1 604660 +HGNC:15522 KCNIP2 potassium voltage-gated channel interacting protein 2 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 KCHIP2 Kv channel-interacting protein 2 "Potassium voltage-gated channel regulatory subunits|EF-hand domain containing" "858|863" 2001-05-23 2016-02-04 2016-02-04 30819 ENSG00000120049 OTTHUMG00000018937 uc001kuf.4 XM_011539731 "CCDS7521|CCDS7522|CCDS7523|CCDS7524|CCDS7525|CCDS7526|CCDS41562" Q9NS61 10676964 MGI:2135916 RGD:70887 KCNIP2 604661 +HGNC:48680 KCNIP2-AS1 KCNIP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q24.32 10q24.32 2013-06-06 2013-06-06 100289509 ENSG00000226009 OTTHUMG00000018936 NR_045118 +HGNC:15523 KCNIP3 potassium voltage-gated channel interacting protein 3 protein-coding gene gene with protein product Approved 2q11.1 02q11.1 "DREAM|KCHIP3" calsenilin CSEN "calsenilin, presenilin-binding protein, EF hand transcription factor|Kv channel interacting protein 3, calsenilin" "Potassium voltage-gated channel regulatory subunits|EF-hand domain containing" "858|863" 2001-05-24 2006-02-11 2016-02-04 2016-10-05 30818 ENSG00000115041 OTTHUMG00000130392 uc002sup.4 AF199599 NM_013434 "CCDS2013|CCDS33245" Q9Y2W7 "9771752|10078534" MGI:1929258 RGD:70888 KCNIP3 604662 +HGNC:30083 KCNIP4 potassium voltage-gated channel interacting protein 4 protein-coding gene gene with protein product Approved 4p15.31-p15.2 04p15.31-p15.2 "CALP|KCHIP4|MGC44947" Kv channel interacting protein 4 "Potassium voltage-gated channel regulatory subunits|EF-hand domain containing" "858|863" 2003-12-17 2016-02-04 2016-10-11 80333 ENSG00000185774 OTTHUMG00000128557 uc003gqf.2 AF453244 NM_025221 "CCDS3428|CCDS43215|CCDS43216|CCDS43217|CCDS47035" Q6PIL6 "11805342|11847232" MGI:1933131 RGD:708539 KCNIP4 608182 +HGNC:29895 KCNIP4-IT1 KCNIP4 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 4p15.2 04p15.2 UM9-5 non coding transcript UM9(5) NCRNA00099 "non-protein coding RNA 99|KCNIP4 intronic transcript 1 (non-protein coding)" Long non-coding RNAs 788 2008-09-04 2011-08-11 2015-02-25 2016-10-11 359822 ENSG00000280650 OTTHUMG00000189553 uc003gqj.1 BK000166 NR_002813 12515386 um9-5 +HGNC:6255 KCNJ1 potassium voltage-gated channel subfamily J member 1 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "Kir1.1|ROMK1" potassium inwardly-rectifying channel, subfamily J, member 1 Potassium voltage-gated channel subfamily J 276 1993-08-03 2016-02-04 2016-10-05 3758 ENSG00000151704 OTTHUMG00000048247 uc001qes.3 BC063109 NM_000220 "CCDS8476|CCDS8477" P48048 "7680431|8190102|16382105" MGI:1927248 RGD:2957 KCNJ1 600359 122783 objectId:429 +HGNC:6263 KCNJ2 potassium voltage-gated channel subfamily J member 2 protein-coding gene gene with protein product Approved 17q24.3 17q24.3 "Kir2.1|IRK1|LQT7" potassium inwardly-rectifying channel, subfamily J, member 2 Potassium voltage-gated channel subfamily J 276 1994-02-08 2016-02-04 2016-10-12 3759 ENSG00000123700 OTTHUMG00000180351 uc002jir.4 AF011904 NM_000891 CCDS11688 P63252 "7696590|11240146|16382105" MGI:104744 RGD:61968 "Gene Connection for the Heart|http://www.fsm.it/cardmoc/|KCNJ2 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=KCNJ2|LRG_328|http://www.lrg-sequence.org/LRG/LRG_328" KCNJ2 600681 122791 objectId:430 +HGNC:43720 KCNJ2-AS1 KCNJ2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 FLJ36644 "KCNJ2 antisense RNA 1 (non-protein coding)|KCNJ2 antisense RNA 1" 2012-02-03 2012-08-16 2012-10-12 400617 ENSG00000267365 OTTHUMG00000180350 uc021uci.1 AK093963 NR_036534 +HGNC:6264 KCNJ3 potassium voltage-gated channel subfamily J member 3 protein-coding gene gene with protein product Approved 2q24.1 02q24.1 "Kir3.1|GIRK1|KGA" potassium inwardly-rectifying channel, subfamily J, member 3 Potassium voltage-gated channel subfamily J 276 1994-02-08 2016-02-04 2016-02-04 3760 ENSG00000162989 OTTHUMG00000131937 uc002tyv.3 U50964 NM_002239 "CCDS2200|CCDS58733" P48549 "8088798|16382105" MGI:104742 RGD:2958 KCNJ3 601534 objectId:434 +HGNC:6265 KCNJ4 potassium voltage-gated channel subfamily J member 4 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "Kir2.3|HIR|HRK1|hIRK2|IRK3" potassium inwardly-rectifying channel, subfamily J, member 4 Potassium voltage-gated channel subfamily J 276 1995-04-13 2016-02-04 2016-02-04 3761 ENSG00000168135 OTTHUMG00000151131 uc003avt.3 U07364 NM_004981 CCDS13971 P48050 "8016146|16382105" MGI:104743 RGD:621436 KCNJ4 600504 objectId:432 +HGNC:6266 KCNJ5 potassium voltage-gated channel subfamily J member 5 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "Kir3.4|CIR|KATP1|GIRK4|LQT13" potassium inwardly-rectifying channel, subfamily J, member 5 Potassium voltage-gated channel subfamily J 276 1995-04-13 2016-02-04 2016-10-12 3762 ENSG00000120457 OTTHUMG00000165795 uc001qet.4 D50134 NM_000890 CCDS8479 P48544 16382105 MGI:104755 RGD:61971 LRG_333|http://www.lrg-sequence.org/LRG/LRG_333 KCNJ5 600734 235181 objectId:437 +HGNC:6267 KCNJ6 potassium voltage-gated channel subfamily J member 6 protein-coding gene gene with protein product Approved 21q22.13 21q22.13 "Kir3.2|GIRK2|KATP2|BIR1|hiGIRK2" KCNJ7 potassium inwardly-rectifying channel, subfamily J, member 6 Potassium voltage-gated channel subfamily J 276 1995-04-13 2016-02-04 2016-10-05 3763 ENSG00000157542 OTTHUMG00000086667 uc002ywn.2 U24660 NM_002240 CCDS42927 P48051 "7796919|16382105" MGI:104781 RGD:2959 KCNJ6 600877 444179 objectId:435 +HGNC:41352 KCNJ6-AS1 KCNJ6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.13 21q22.13 KCNJ6-IT1 KCNJ6 intronic transcript 1 (non-protein coding) 2011-05-23 2014-02-10 2014-02-10 2014-11-19 100874329 ENSG00000233213 OTTHUMG00000086669 +HGNC:6269 KCNJ8 potassium voltage-gated channel subfamily J member 8 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 Kir6.1 potassium inwardly-rectifying channel, subfamily J, member 8 Potassium voltage-gated channel subfamily J 276 1995-07-18 2016-02-04 2016-02-04 3764 ENSG00000121361 OTTHUMG00000169093 uc001rff.4 BC000544 NM_004982 CCDS8692 Q15842 "8595887|16382105" MGI:1100508 RGD:2960 KCNJ8 600935 297206 objectId:441 +HGNC:6270 KCNJ9 potassium voltage-gated channel subfamily J member 9 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "Kir3.3|GIRK3" potassium inwardly-rectifying channel, subfamily J, member 9 Potassium voltage-gated channel subfamily J 276 1996-07-26 2016-02-04 2016-02-04 3765 ENSG00000162728 OTTHUMG00000024072 uc001fuy.2 U52152 NM_004983 CCDS1194 Q92806 "8575783|16382105" MGI:108007 RGD:621440 KCNJ9 600932 objectId:436 +HGNC:6256 KCNJ10 potassium voltage-gated channel subfamily J member 10 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "Kir4.1|Kir1.2" potassium inwardly-rectifying channel, subfamily J, member 10 Potassium voltage-gated channel subfamily J 276 1996-07-26 2016-02-04 2016-02-04 3766 ENSG00000177807 OTTHUMG00000024073 uc001fuw.3 U52155 NM_002241 CCDS1193 P78508 "9367690|8995301|16382105" MGI:1194504 RGD:61822 KCNJ10 602208 189344 objectId:438 +HGNC:6257 KCNJ11 potassium voltage-gated channel subfamily J member 11 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "Kir6.2|BIR" potassium inwardly-rectifying channel, subfamily J, member 11 Potassium voltage-gated channel subfamily J 276 1997-09-12 2016-02-04 2016-02-04 3767 ENSG00000187486 OTTHUMG00000165914 uc001mna.4 D50582 NM_000525 "CCDS31436|CCDS53606" Q14654 "7502040|16382105" MGI:107501 RGD:69247 KCNJ11 600937 122787 objectId:442 +HGNC:6258 KCNJ12 potassium voltage-gated channel subfamily J member 12 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "Kir2.2|Kir2.2v|IRK2|hIRK1" KCNJN1 "potassium inwardly-rectifying channel, subfamily J, inhibitor 1|potassium inwardly-rectifying channel, subfamily J, member 12" Potassium voltage-gated channel subfamily J 276 1996-11-11 2016-02-04 2016-10-05 3768 ENSG00000184185 OTTHUMG00000132039 uc002gyv.2 L36069 NM_021012 CCDS11219 Q14500 "7859381|12417321|16382105" MGI:108495 RGD:621660 KCNJ12 602323 objectId:431 +HGNC:6259 KCNJ13 potassium voltage-gated channel subfamily J member 13 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "Kir7.1|Kir1.4|LCA16" potassium inwardly-rectifying channel, subfamily J, member 13 Potassium voltage-gated channel subfamily J 276 1998-08-10 2016-02-04 2016-10-05 3769 ENSG00000115474 OTTHUMG00000153292 uc002vtp.4 AJ006128 NM_002242 "CCDS2498|CCDS54437" O60928 "9878260|9620703|16382105" MGI:3781032 RGD:621661 KCNJ13 603208 159740 objectId:443 +HGNC:6260 KCNJ14 potassium voltage-gated channel subfamily J member 14 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "Kir2.4|IRK4" potassium inwardly-rectifying channel, subfamily J, member 14 Potassium voltage-gated channel subfamily J 276 1998-08-10 2016-02-04 2016-10-11 3770 ENSG00000182324 OTTHUMG00000183307 uc002pje.3 BC042033 NM_013348 CCDS12721 Q9UNX9 "9592090|10723734|16382105" MGI:2384820 RGD:628872 KCNJ14 603953 objectId:433 +HGNC:6261 KCNJ15 potassium voltage-gated channel subfamily J member 15 protein-coding gene gene with protein product Approved 21q22.13-q22.2 21q22.13-q22.2 "Kir4.2|Kir1.3|IRKK" potassium inwardly-rectifying channel, subfamily J, member 15 Potassium voltage-gated channel subfamily J 276 1997-06-18 2016-02-04 2016-10-11 3772 ENSG00000157551 OTTHUMG00000090609 uc002ywv.5 Y10745 NM_002243 CCDS13656 Q99712 "9299242|8995301|16382105" MGI:1310000 RGD:621662 KCNJ15 602106 objectId:439 +HGNC:6262 KCNJ16 potassium voltage-gated channel subfamily J member 16 protein-coding gene gene with protein product Approved 17q24.3 17q24.3 "Kir5.1|BIR9" potassium inwardly-rectifying channel, subfamily J, member 16 Potassium voltage-gated channel subfamily J 276 1998-05-29 2016-02-04 2016-02-04 3773 ENSG00000153822 OTTHUMG00000180349 uc031reh.2 AF153815 NM_018658 "CCDS11687|CCDS74141" Q9NPI9 "11240146|16382105" MGI:1314842 RGD:61824 KCNJ16 605722 objectId:440 +HGNC:39080 KCNJ18 potassium voltage-gated channel subfamily J member 18 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "KIR2.6|TTPP2" potassium inwardly-rectifying channel, subfamily J, member 18 Potassium voltage-gated channel subfamily J 276 2010-10-05 2016-02-04 2016-02-04 100134444 ENSG00000260458 OTTHUMG00000175863 uc032exz.1 NM_001194958 CCDS74015 B7U540 20074522 613236 310433 +HGNC:6272 KCNK1 potassium two pore domain channel subfamily K member 1 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "K2p1.1|DPK|TWIK-1" tandem of P domains in a weak inward rectifying K+ channel 1 "potassium channel, subfamily K, member 1|potassium channel, two pore domain subfamily K, member 1" Potassium two pore domain channel subfamily K 277 1997-04-16 2016-02-04 2016-02-04 3775 ENSG00000135750 OTTHUMG00000037923 uc010pxo.1 U33632 NM_002245 CCDS1599 O00180 "8661042|16382106" MGI:109322 RGD:621447 KCNK1 601745 objectId:513 +HGNC:6277 KCNK2 potassium two pore domain channel subfamily K member 2 protein-coding gene gene with protein product Approved 1q41 01q41 "K2p2.1|TREK-1" "potassium channel, subfamily K, member 2|potassium channel, two pore domain subfamily K, member 2" Potassium two pore domain channel subfamily K 277 1998-04-03 2016-02-04 2016-02-04 3776 ENSG00000082482 OTTHUMG00000037017 uc001hkr.5 AF004711 NM_014217 "CCDS31024|CCDS41466|CCDS41467" O95069 "9721223|16382106" MGI:109366 RGD:621448 KCNK2 603219 objectId:514 +HGNC:6278 KCNK3 potassium two pore domain channel subfamily K member 3 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "K2p3.1|TASK|TASK-1" "potassium channel, subfamily K, member 3|potassium channel, two pore domain subfamily K, member 3" Potassium two pore domain channel subfamily K 277 1997-12-12 2016-02-04 2016-10-05 3777 ENSG00000171303 OTTHUMG00000125530 uc002rhn.3 AF006823 NM_002246 CCDS1727 O14649 "9312005|9721223|16382106" MGI:1100509 RGD:61997 KCNK3 603220 360868 objectId:515 +HGNC:6279 KCNK4 potassium two pore domain channel subfamily K member 4 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "K2p4.1|TRAAK" "potassium channel, subfamily K, member 4|potassium channel, two pore domain subfamily K, member 4" Potassium two pore domain channel subfamily K 277 2000-04-13 2016-02-04 2016-10-05 50801 ENSG00000182450 OTTHUMG00000168006 uc001nzj.2 AF247042 NM_033311 CCDS8067 Q9NYG8 "10767409|16382106" MGI:1298234 RGD:621449 KCNK4 605720 objectId:516 +HGNC:6280 KCNK5 potassium two pore domain channel subfamily K member 5 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "K2p5.1|TASK-2" "potassium channel, subfamily K, member 5|potassium channel, two pore domain subfamily K, member 5" Potassium two pore domain channel subfamily K 277 1998-11-17 2016-02-04 2016-10-05 8645 ENSG00000164626 OTTHUMG00000014642 uc003oon.4 AF084830 NM_003740 CCDS4841 O95279 "9812978|16382106" MGI:1336175 RGD:1564985 KCNK5 603493 objectId:517 +HGNC:6281 KCNK6 potassium two pore domain channel subfamily K member 6 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "K2p6.1|TWIK-2" "potassium channel, subfamily K, member 6|potassium channel, two pore domain subfamily K, member 6" Potassium two pore domain channel subfamily K 277 1999-04-07 2016-02-04 2016-10-11 9424 ENSG00000099337 OTTHUMG00000182325 uc002oic.4 AF117708 NM_004823 CCDS12513 Q9Y257 "10075682|10393428|16382106" MGI:1891291 RGD:621450 KCNK6 603939 objectId:518 +HGNC:6282 KCNK7 potassium two pore domain channel subfamily K member 7 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 K2p7.1 "potassium channel, subfamily K, member 7|potassium channel, two pore domain subfamily K, member 7" Potassium two pore domain channel subfamily K 277 1999-07-09 2016-02-04 2016-10-05 10089 ENSG00000173338 OTTHUMG00000166528 uc001oes.3 AF110522 NM_005714 "CCDS8106|CCDS31608|CCDS41673" Q9Y2U2 "10206991|11256078|16382106" MGI:1341841 RGD:1565025 KCNK7 603940 objectId:519 +HGNC:6283 KCNK9 potassium two pore domain channel subfamily K member 9 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "K2p9.1|TASK3|TASK-3" "potassium channel, subfamily K, member 9|potassium channel, two pore domain subfamily K, member 9" Potassium two pore domain channel subfamily K 277 2000-05-26 2016-02-04 2016-10-12 51305 ENSG00000169427 OTTHUMG00000164186 uc064qpg.1 AF212829 NM_016601 CCDS6377 Q9NPC2 "10734076|16382106" MGI:3521816 RGD:621451 LRG_1042|http://www.lrg-sequence.org/LRG/LRG_1042 KCNK9 605874 166255 objectId:520 +HGNC:6273 KCNK10 potassium two pore domain channel subfamily K member 10 protein-coding gene gene with protein product Approved 14q31.3 14q31.3 "K2p10.1|TREK-2|TREK2|PPP1R97" protein phosphatase 1, regulatory subunit 97 "potassium channel, subfamily K, member 10|potassium channel, two pore domain subfamily K, member 10" "Potassium two pore domain channel subfamily K |Protein phosphatase 1 regulatory subunits" "277|694" 2001-06-22 2016-02-04 2016-10-11 54207 ENSG00000100433 OTTHUMG00000170743 uc001xwn.4 AF279890 NM_021161 "CCDS9880|CCDS9881|CCDS9882" P57789 "10880510|16382106" MGI:1919508 RGD:619732 KCNK10 605873 objectId:521 +HGNC:6274 KCNK12 potassium two pore domain channel subfamily K member 12 protein-coding gene gene with protein product Approved 2p16.3 02p16.3 "THIK-2|THIK2|K2p12.1" "potassium channel, subfamily K, member 12|potassium channel, two pore domain subfamily K, member 12" Potassium two pore domain channel subfamily K 277 2000-07-31 2016-02-04 2016-02-04 56660 ENSG00000184261 OTTHUMG00000129131 uc002rwb.4 AF287302 NM_022055 CCDS1835 Q9HB15 11060316 MGI:2684043 RGD:68940 KCNK12 607366 objectId:522 +HGNC:6275 KCNK13 potassium two pore domain channel subfamily K member 13 protein-coding gene gene with protein product Approved 14q32.11 14q32.11 "K2p13.1|THIK-1|THIK1" "potassium channel, subfamily K, member 13|potassium channel, two pore domain subfamily K, member 13" Potassium two pore domain channel subfamily K 277 2000-07-31 2016-02-04 2016-02-04 56659 ENSG00000152315 OTTHUMG00000171017 uc001xye.2 AF287303 NM_022054 CCDS9889 Q9HB14 "11060316|16382106" MGI:2384976 RGD:68941 KCNK13 607367 objectId:523 +HGNC:13814 KCNK15 potassium two pore domain channel subfamily K member 15 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "K2p15.1|dJ781B1.1|KT3.3|KIAA0237|TASK5|TASK-5" "KCNK11|KCNK14" "potassium channel, subfamily K, member 15|potassium channel, two pore domain subfamily K, member 15" Potassium two pore domain channel subfamily K 277 2000-11-15 2016-02-04 2016-02-04 60598 ENSG00000124249 OTTHUMG00000032544 uc002xmr.4 AF257081 NM_022358 CCDS13337 Q9H427 "11409881|11431495|16382106" MGI:2675209 RGD:619733 KCNK15 607368 objectId:524 +HGNC:49901 KCNK15-AS1 KCNK15 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 20q13.12 20q13.12 RP11-445H22.4 2014-03-20 2015-01-23 106144538 ENSG00000244558 OTTHUMG00000032545 BF195580 NR_132377 25430712 +HGNC:14464 KCNK16 potassium two pore domain channel subfamily K member 16 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "K2p16.1|TALK-1|TALK1" "potassium channel, subfamily K, member 16|potassium channel, two pore domain subfamily K, member 16" Potassium two pore domain channel subfamily K 277 2001-06-29 2016-02-04 2016-10-05 83795 ENSG00000095981 OTTHUMG00000014645 uc011dtz.2 AF358909 NM_032115 "CCDS4843|CCDS47420|CCDS47421|CCDS47422" Q96T55 "11263999|16382106" MGI:1921821 RGD:1582911 KCNK16 607369 objectId:525 +HGNC:14465 KCNK17 potassium two pore domain channel subfamily K member 17 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "K2p17.1|TALK-2|TALK2|TASK4|TASK-4" "potassium channel, subfamily K, member 17|potassium channel, two pore domain subfamily K, member 17" Potassium two pore domain channel subfamily K 277 2001-06-29 2016-02-04 2016-10-05 89822 ENSG00000124780 OTTHUMG00000014646 uc003ooo.4 AF358910 NM_031460 "CCDS4842|CCDS47419" Q96T54 16382106 KCNK17 607370 objectId:526 +HGNC:19439 KCNK18 potassium two pore domain channel subfamily K member 18 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "K2p18.1|TRESK-2|TRESK2|TRESK|TRIK" TWIK related spinal cord K+ channel "potassium channel, subfamily K, member 18|potassium channel, two pore domain subfamily K, member 18" Potassium two pore domain channel subfamily K 277 2005-01-07 2016-02-04 2016-10-05 338567 ENSG00000186795 OTTHUMG00000019120 uc010qsr.2 AB087138 NM_181840 CCDS7598 Q7Z418 16382106 MGI:2685627 RGD:1303091 KCNK18 613655 objectId:527 +HGNC:6284 KCNMA1 potassium calcium-activated channel subfamily M alpha 1 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "KCa1.1|mSLO1" "BK channel alpha subunit|maxiK channel|big potassium channel alpha subunit" SLO "potassium large conductance calcium-activated channel, subfamily M, alpha member 1|potassium channel, calcium activated large conductance subfamily M alpha, member 1" Potassium calcium-activated channels 255 1994-12-15 2016-02-04 2016-10-05 3778 ENSG00000156113 OTTHUMG00000018543 uc001jxm.4 U11717 NM_002247 "CCDS7352|CCDS60569|CCDS60571|CCDS60572|CCDS73156|CCDS53545|CCDS81481" Q12791 "7987297|16382103" MGI:99923 RGD:620715 KCNMA1 600150 122795 objectId:380 +HGNC:51213 KCNMA1-AS1 KCNMA1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2014-08-07 2014-08-07 101929328 ENSG00000236467 OTTHUMG00000018534 BX092192 NR_120655 +HGNC:51214 KCNMA1-AS2 KCNMA1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2014-08-07 2014-08-07 101929310 ENSG00000225497 OTTHUMG00000018537 NR_120654 +HGNC:51215 KCNMA1-AS3 KCNMA1 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2014-08-07 2014-08-07 101929286 ENSG00000225652 OTTHUMG00000018539 "AA453582|AW510993" NR_126365 +HGNC:6285 KCNMB1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 hslo-beta "BK channel beta subunit 1|MaxiK channel beta-subunit 1|big potassium channel beta subunit 1" "potassium large conductance calcium-activated channel, subfamily M, beta member 1|potassium channel subfamily M regulatory beta subunit 1" Potassium calcium-activated channel subfamily M regulatory beta subunits 857 1997-12-05 2016-02-04 2016-10-11 3779 ENSG00000145936 OTTHUMG00000130439 uc003maq.3 AF035046 NM_004137 CCDS4373 Q16558 "8799178|9888999" MGI:1334203 RGD:2961 KCNMB1 603951 +HGNC:6286 KCNMB2 potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding gene gene with protein product Approved 3q26.32 03q26.32 "BK channel beta subunit 2|MaxiK channel beta-subunit 2|big potassium channel beta subunit 2" "potassium large conductance calcium-activated channel, subfamily M, beta member 2|potassium channel subfamily M regulatory beta subunit 2" Potassium calcium-activated channel subfamily M regulatory beta subunits 857 1999-06-04 2016-02-04 2016-02-04 10242 ENSG00000197584 OTTHUMG00000157264 uc062qdk.1 AF099137 NM_181361 CCDS3223 Q9Y691 10097176 MGI:1919663 RGD:631398 KCNMB2 605214 +HGNC:51409 KCNMB2-AS1 KCNMB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q26.32 03q26.32 RP11-385J1.2 2014-11-20 2015-02-09 104797538 ENSG00000237978 OTTHUMG00000157289 "BG977814|BG206373|DA735220" NR_126561 25394782 +HGNC:6287 KCNMB3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding gene gene with protein product Approved 3q26.32 03q26.32 "BK channel beta subunit 3|MaxiK channel beta-subunit 3|big potassium channel beta subunit 3" "KCNMB2|KCNMBL" "potassium large conductance calcium-activated channel, subfamily M beta member 3|potassium channel subfamily M regulatory beta subunit 3" Potassium calcium-activated channel subfamily M regulatory beta subunits 857 2000-01-07 2016-02-04 2016-10-05 27094 ENSG00000171121 OTTHUMG00000157337 uc003fjn.4 AF139471 NM_001163677 "CCDS3225|CCDS3226|CCDS43172|CCDS43173|CCDS54683" Q9NPA1 10585773 MGI:3612244 RGD:1311852 KCNMB3 605222 +HGNC:6288 KCNMB3P1 potassium calcium-activated channel subfamily M regulatory beta subunit 3 pseudogene 1 pseudogene pseudogene Approved 22q11.1 22q11.1 KCNMB3L1 "KCNMB2L|KCNMBLP|KCNMB3L" "potassium large conductance calcium-activated channel, subfamily M, beta member 3-like|potassium large conductance calcium-activated channel, subfamily M, beta member 3 pseudogene 1|potassium channel subfamily M regulatory beta subunit 3 pseudogene 1" 2000-01-07 2010-10-21 2016-02-04 2016-02-04 27093 ENSG00000239435 OTTHUMG00000141303 AP000365 NG_002679 10585773 +HGNC:6289 KCNMB4 potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding gene gene with protein product Approved 12q15 12q15 "BK channel beta subunit 4|MaxiK channel beta-subunit 4|big potassium channel beta subunit 4" "potassium large conductance calcium-activated channel, subfamily M, beta member 4|potassium channel subfamily M regulatory beta subunit 4" Potassium calcium-activated channel subfamily M regulatory beta subunits 857 2000-02-02 2016-02-04 2016-02-04 27345 ENSG00000135643 OTTHUMG00000167586 uc001svx.4 AF207992 NM_014505 CCDS8997 Q86W47 "10692449|10828459" MGI:1913272 RGD:620728 KCNMB4 605223 +HGNC:6290 KCNN1 potassium calcium-activated channel subfamily N member 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "KCa2.1|hSK1" small conductance calcium-activated potassium channel 1 "potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1|potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 1" Potassium calcium-activated channels 255 1998-04-07 2016-02-04 2016-10-11 3780 ENSG00000105642 OTTHUMG00000183482 uc002nht.4 U69883 NM_002248 CCDS67611 Q92952 "8781233|10516439|16382103" MGI:1933993 RGD:2962 KCNN1 602982 objectId:381 +HGNC:6291 KCNN2 potassium calcium-activated channel subfamily N member 2 protein-coding gene gene with protein product Approved 5q22.3 05q22.3 "KCa2.2|hSK2" small conductance calcium-activated potassium channel 2 "potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2|potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 2" Potassium calcium-activated channels 255 1998-04-07 2016-02-04 2016-02-04 3781 ENSG00000080709 OTTHUMG00000128836 uc003kqo.5 AF239613 NM_021614 "CCDS4114|CCDS43352" Q9H2S1 16382103 MGI:2153182 RGD:2963 KCNN2 605879 objectId:382 +HGNC:6292 KCNN3 potassium calcium-activated channel subfamily N member 3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "KCa2.3|hSK3|SKCA3" small conductance calcium-activated potassium channel 3 "potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3|potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 3" Potassium calcium-activated channels 255 1998-04-07 2016-02-04 2016-02-04 3782 ENSG00000143603 OTTHUMG00000037260 uc001ffp.4 AF031815 NM_002249 "CCDS1072|CCDS30880|CCDS72928" Q9UGI6 "9491810|16382103" MGI:2153183 RGD:2964 KCNN3 602983 objectId:383 +HGNC:6293 KCNN4 potassium calcium-activated channel subfamily N member 4 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "KCa3.1|hSK4|hKCa4|hIKCa1|IK" "small conductance calcium-activated potassium channel 4|intermediate conductance calcium-activated potassium channel" "potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4|potassium channel, calcium activated intermediate/small conductance subfamily N alpha, member 4" Potassium calcium-activated channels 255 1998-04-07 2016-02-04 2016-10-11 3783 ENSG00000104783 OTTHUMG00000182779 uc002oxl.3 AF022797 NM_002250 CCDS12630 O15554 "9380751|9407042|16382103" MGI:1277957 RGD:621476 KCNN4 602754 442943 objectId:384 +HGNC:6294 KCNQ1 potassium voltage-gated channel subfamily Q member 1 protein-coding gene gene with protein product Approved 11p15.5-p15.4 11p15.5-p15.4 "Kv7.1|KCNA8|KVLQT1|JLNS1|LQT1" Jervell and Lange-Nielsen syndrome 1 "LQT|KCNA9" "potassium voltage-gated channel, KQT-like subfamily, member 1|potassium channel, voltage gated KQT-like subfamily Q, member 1" Potassium voltage-gated channels 274 1997-02-05 2016-02-04 2016-10-12 3784 ENSG00000053918 OTTHUMG00000009900 uc001lwn.4 AF000571 NM_000218 CCDS7736 P51787 "8528244|16382104" MGI:108083 RGD:621503 "Gene Connection for the Heart|http://www.fsm.it/cardmoc/|KCNQ1 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=KCNQ1|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=KCNQ1|LRG_287|http://www.lrg-sequence.org/LRG/LRG_287" KCNQ1 607542 122800 objectId:560 +HGNC:42790 KCNQ1-AS1 KCNQ1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 KCNQ1 antisense RNA 1 (non-protein coding) 2011-08-19 2012-08-15 2014-11-19 338653 ENSG00000229414 OTTHUMG00000011704 uc057xys.1 AJ251642 NR_130721 +HGNC:13335 KCNQ1DN KCNQ1 downstream neighbor (non-protein coding) non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 "BWRT|HSA404617" KCNQ1 downstream neighbor 2004-06-07 2011-08-30 2016-10-05 55539 ENSG00000237941 OTTHUMG00000009942 uc009ydq.4 AB039920 NR_024627 Q9H478 "11056398|11063728|22067257" 610980 +HGNC:6295 KCNQ1OT1 KCNQ1 opposite strand/antisense transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 "KvDMR1|KCNQ1-AS2|KvLQT1-AS|LIT1|NCRNA00012" "non-protein coding RNA 12|KCNQ1 antisense RNA 2 (non-protein coding)|KCNQ1 overlapping transcript 1 (non-protein coding)" Long non-coding RNAs 788 1999-08-05 2011-08-19 2016-10-12 10984 ENSG00000269821 OTTHUMG00000171022 uc001lwp.4 NR_002728 "10220444|12772698" MGI:1926855 LRG_1052|http://www.lrg-sequence.org/LRG/LRG_1052 604115 138711 Kcnq1ot1 +HGNC:6296 KCNQ2 potassium voltage-gated channel subfamily Q member 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "Kv7.2|ENB1|BFNC|KCNA11|HNSPC" "EBN|EBN1" "potassium voltage-gated channel, KQT-like subfamily, member 2|potassium channel, voltage gated KQT-like subfamily Q, member 2" Potassium voltage-gated channels 274 1998-01-12 2016-02-04 2016-02-04 3785 ENSG00000075043 OTTHUMG00000033049 uc002yey.2 AF033348 NM_172109 "CCDS13518|CCDS13519|CCDS13520|CCDS13521|CCDS46629" O43526 "9425895|16382104" MGI:1309503 RGD:621504 KCNQ2 602235 122808 objectId:561 +HGNC:6297 KCNQ3 potassium voltage-gated channel subfamily Q member 3 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 Kv7.3 EBN2 "potassium voltage-gated channel, KQT-like subfamily, member 3|potassium channel, voltage gated KQT-like subfamily Q, member 3" Potassium voltage-gated channels 274 1998-01-12 2016-02-04 2016-10-05 3786 ENSG00000184156 OTTHUMG00000137472 uc003ytj.4 AB208890 NM_004519 "CCDS34943|CCDS56554" O43525 "9425900|16382104" MGI:1336181 RGD:69222 KCNQ3 602232 122817 objectId:562 +HGNC:6298 KCNQ4 potassium voltage-gated channel subfamily Q member 4 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 Kv7.4 DFNA2 "potassium voltage-gated channel, KQT-like subfamily, member 4|potassium channel, voltage gated KQT-like subfamily Q, member 4" Potassium voltage-gated channels 274 1999-02-05 2016-02-04 2016-10-05 9132 ENSG00000117013 OTTHUMG00000007730 uc001cgh.2 AF105202 NM_004700 CCDS456 P56696 "10025409|16382104" MGI:1926803 RGD:61799 KCNQ4 603537 122821 objectId:563 +HGNC:6299 KCNQ5 potassium voltage-gated channel subfamily Q member 5 protein-coding gene gene with protein product Approved 6q13 06q13 Kv7.5 "potassium voltage-gated channel, KQT-like subfamily, member 5|potassium channel, voltage gated KQT-like subfamily Q, member 5" Potassium voltage-gated channels 274 2000-08-11 2016-02-04 2016-10-05 56479 ENSG00000185760 OTTHUMG00000015020 uc003pgk.4 AF202977 NM_019842 "CCDS4976|CCDS55034|CCDS55035|CCDS55037" Q9NR82 "10787416|10816588|16382104" MGI:1924937 RGD:628848 KCNQ5 607357 objectId:564 +HGNC:40323 KCNQ5-AS1 KCNQ5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q13 06q13 KCNQ5 antisense RNA 1 (non-protein coding) 2011-05-23 2012-08-15 2014-11-19 100873997 ENSG00000229154 OTTHUMG00000015018 uc031spb.1 NR_046621 +HGNC:40322 KCNQ5-AS2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:41354 KCNQ5-IT1 KCNQ5 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6q13 06q13 KCNQ5 intronic transcript 1 (non-protein coding) 2011-05-23 2015-02-25 2015-02-25 100507381 ENSG00000233844 OTTHUMG00000015014 uc063pnj.1 NR_120503 +HGNC:18893 KCNRG potassium channel regulator protein-coding gene gene with protein product Approved 13q14.2 13q14.2 2003-02-25 2016-10-05 283518 ENSG00000198553 OTTHUMG00000140140 uc001vdu.3 NM_173605 "CCDS9424|CCDS41889" Q8N5I3 MGI:2685591 RGD:1307199 KCNRG 607947 +HGNC:6300 KCNS1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 Kv9.1 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 1|potassium voltage-gated channel, modifier subfamily S, member 1" Potassium voltage-gated channels 274 1998-04-06 2016-02-04 2016-10-05 3787 ENSG00000124134 OTTHUMG00000033079 uc002xnc.4 AF043473 NM_002251 CCDS13342 Q96KK3 "9305895|16382104" MGI:1197019 RGD:621524 KCNS1 602905 objectId:567 +HGNC:6301 KCNS2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 Kv9.2 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 2|potassium voltage-gated channel, modifier subfamily S, member 2" Potassium voltage-gated channels 274 1998-04-06 2016-02-04 2016-10-05 3788 ENSG00000156486 OTTHUMG00000044337 uc003yin.4 AB032970 NM_020697 CCDS6279 Q9ULS6 "9305895|16382104" MGI:1197011 RGD:621525 KCNS2 602906 objectId:568 +HGNC:6302 KCNS3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding gene gene with protein product Approved 2p24.2 02p24.2 Kv9.3 "potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3|potassium voltage-gated channel, modifier subfamily S, member 3" Potassium voltage-gated channels 274 1998-04-06 2016-02-04 2016-10-05 3790 ENSG00000170745 OTTHUMG00000044150 uc002rcv.4 AF043472 NM_002252 CCDS1692 Q9BQ31 "10484328|16382104" MGI:1098804 RGD:621527 KCNS3 603888 objectId:569 +HGNC:18865 KCNT1 potassium sodium-activated channel subfamily T member 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "KCa4.1|KIAA1422|SLACK|Slo2.2" Sequence like a calcium-activated K+ channel "potassium channel, subfamily T, member 1|potassium channel, sodium activated subfamily T, member 1" Potassium sodium-activated channel subfamily T 856 2002-07-10 2016-02-04 2016-04-25 57582 ENSG00000107147 OTTHUMG00000020917 uc011mdq.3 AB037843 NM_020822 "CCDS35175|CCDS65188" Q5JUK3 "10718198|16382103" MGI:1924627 RGD:621106 KCNT1 608167 317382 objectId:385 +HGNC:18866 KCNT2 potassium sodium-activated channel subfamily T member 2 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "KCa4.2|SLICK|SLO2.1" sodium and chloride activated ATP sensitive potassium channel "potassium channel, subfamily T, member 2|potassium channel, sodium activated subfamily T, member 2" Potassium sodium-activated channel subfamily T 856 2002-07-10 2016-02-04 2016-02-04 343450 ENSG00000162687 OTTHUMG00000035611 uc001gtd.3 "BX647852|AY359444|AK127807" NM_198503 "CCDS1384|CCDS72994|CCDS72995" Q6UVM3 16382103 MGI:3036273 RGD:735074 KCNT2 610044 objectId:386 +HGNC:18867 KCNU1 potassium calcium-activated channel subfamily U member 1 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "KCa5.1|Slo3|KCNMC1|Kcnma3" potassium channel, subfamily U, member 1 Potassium calcium-activated channels 255 2002-07-10 2016-02-04 2016-10-11 157855 ENSG00000215262 OTTHUMG00000163981 uc010lvw.5 BC028701 NM_001031836 CCDS55220 A8MYU2 16382103 MGI:1202300 RGD:1585877 KCNU1 615215 objectId:387 +HGNC:18861 KCNV1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding gene gene with protein product Approved 8q23.2 08q23.2 Kv8.1 "potassium channel, subfamily V, member 1|potassium channel, voltage gated modifier subfamily V, member 1" Potassium voltage-gated channels 274 2002-07-10 2016-02-04 2016-02-04 27012 ENSG00000164794 OTTHUMG00000165637 uc010mcw.4 AF167082 NM_014379 CCDS6314 Q6PIU1 "8670833|16382104" MGI:1914748 RGD:621264 KCNV1 608164 objectId:565 +HGNC:19698 KCNV2 potassium voltage-gated channel modifier subfamily V member 2 protein-coding gene gene with protein product Approved 9p24.2 09p24.2 Kv8.2 "potassium channel, subfamily V, member 2|potassium channel, voltage gated modifier subfamily V, member 2" Potassium voltage-gated channels 274 2002-11-20 2016-02-04 2016-02-04 169522 ENSG00000168263 OTTHUMG00000019449 uc003zho.3 AF348983 NM_133497 CCDS6447 Q8TDN2 "12060745|16382104" MGI:2670981 RGD:1309271 KCNV2 607604 159360 objectId:566 +HGNC:17585 KCP kielin/chordin-like protein protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "FLJ33365|NET67" kielin CRIM2 cysteine rich BMP regulator 2 (chordin-like) 2005-07-25 2009-02-18 2009-02-18 2016-10-05 375616 ENSG00000135253 OTTHUMG00000158363 uc064hvz.1 AK122706 NM_199349 Q6ZWJ8 15793581 MGI:2141640 RGD:1561119 KCP 609344 +HGNC:18249 KCTD1 potassium channel tetramerization domain containing 1 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 C18orf5 potassium channel tetramerisation domain containing 1 2002-02-19 2013-06-20 2015-08-28 284252 ENSG00000134504 OTTHUMG00000131947 uc010xbk.5 AF542549 XM_209091 CCDS11888 Q719H9 MGI:1918269 RGD:621566 KCTD1 613420 331979 +HGNC:21294 KCTD2 potassium channel tetramerization domain containing 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 KIAA0176 potassium channel tetramerisation domain containing 2 2003-06-02 2013-06-20 2016-10-11 23510 ENSG00000180901 OTTHUMG00000179276 uc002jmp.4 BC033329 XM_011524575 CCDS32728 Q14681 12620391 MGI:1917632 RGD:1566063 KCTD2 613422 +HGNC:21305 KCTD3 potassium channel tetramerization domain containing 3 protein-coding gene gene with protein product Approved 1q41 01q41 NY-REN-45 potassium channel tetramerisation domain containing 3 2003-06-03 2013-06-20 2014-11-19 51133 ENSG00000136636 OTTHUMG00000037019 uc001hks.5 AK024547 NM_016121 CCDS1515 Q9Y597 10508479 MGI:2444629 RGD:1310658 KCTD3 613272 +HGNC:23227 KCTD4 potassium channel tetramerization domain containing 4 protein-coding gene gene with protein product Approved 13q14.12-q14.13 13q14.12-q14.13 bA321C24.3 potassium channel tetramerisation domain containing 4 2003-10-28 2013-06-20 2014-11-19 386618 ENSG00000180332 OTTHUMG00000016844 uc058wts.1 BC018063 NM_198404 CCDS9396 Q8WVF5 MGI:1914766 RGD:1594637 KCTD4 +HGNC:21423 KCTD5 potassium channel tetramerization domain containing 5 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ20040 potassium channel tetramerisation domain containing 5 2003-10-28 2013-06-20 2014-11-19 54442 ENSG00000167977 OTTHUMG00000128930 uc002crd.5 AK000047 NM_018992 CCDS10475 Q9NXV2 12477932 MGI:1916509 RGD:1304990 KCTD5 611285 +HGNC:22235 KCTD6 potassium channel tetramerization domain containing 6 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "MGC27385|KCASH3" potassium channel tetramerisation domain containing 6 2003-10-28 2013-06-20 2016-10-05 200845 ENSG00000168301 OTTHUMG00000159161 uc003dkj.5 AK074934 NM_153331 CCDS2891 Q8NC69 21472142 MGI:1918643 RGD:1308208 KCTD6 +HGNC:21957 KCTD7 potassium channel tetramerization domain containing 7 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 "FLJ32069|EPM3|CLN14" potassium channel tetramerisation domain containing 7 2003-10-28 2013-06-20 2016-10-12 154881 ENSG00000243335 OTTHUMG00000129543 uc003tve.4 AK056631 NM_153033 "CCDS5534|CCDS55117" Q96MP8 12477932 MGI:2442265 RGD:1582914 LRG_835|http://www.lrg-sequence.org/LRG/LRG_835 KCTD7 611725 268343 +HGNC:22394 KCTD8 potassium channel tetramerization domain containing 8 protein-coding gene gene with protein product Approved 4p13 04p13 potassium channel tetramerisation domain containing 8 2003-10-28 2013-06-20 2014-11-19 386617 ENSG00000183783 OTTHUMG00000099409 uc003gwu.4 AK123347 XM_011513690 CCDS3467 Q6ZWB6 MGI:2443804 RGD:1312020 KCTD8 objectId:1917 +HGNC:22401 KCTD9 potassium channel tetramerization domain containing 9 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "FLJ20038|BTBD27" potassium channel tetramerisation domain containing 9 BTB domain containing 861 2003-10-28 2013-06-20 2016-10-05 54793 ENSG00000104756 OTTHUMG00000099428 uc003xeo.4 BC021216 NM_017634 CCDS6048 Q7L273 11483580 MGI:2145579 RGD:1312010 KCTD9 +HGNC:21428 KCTD9P1 potassium channel tetramerization domain containing 9 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 HsT38306 potassium channel tetramerisation domain containing 9 pseudogene 1 2005-12-20 2013-06-20 2014-11-18 100422273 ENSG00000225014 OTTHUMG00000059512 NG_026227 PGOHUM00000237281 +HGNC:29274 KCTD9P2 potassium channel tetramerization domain containing 9 pseudogene 2 pseudogene pseudogene Approved Xq22.3 Xq22.3 KCTD9L "potassium channel tetramerisation domain containing 9-like|potassium channel tetramerisation domain containing 9 pseudogene 2" 2007-02-13 2008-12-15 2013-06-20 2014-11-19 643535 ENSG00000181819 OTTHUMG00000022140 NG_011074 PGOHUM00000241936 +HGNC:49912 KCTD9P3 potassium channel tetramerization domain containing 9 pseudogene 3 pseudogene pseudogene Approved 9p13.2 09p13.2 2014-03-21 2014-03-21 647013 ENSG00000187988 OTTHUMG00000019919 NG_021645 PGOHUM00000236456 +HGNC:49913 KCTD9P4 potassium channel tetramerization domain containing 9 pseudogene 4 pseudogene pseudogene Approved 11q23.1 11q23.1 2014-03-21 2014-03-21 100422242 ENSG00000214264 OTTHUMG00000167156 NG_024561 PGOHUM00000257923 +HGNC:49914 KCTD9P5 potassium channel tetramerization domain containing 9 pseudogene 5 pseudogene pseudogene Approved 5p13.2 05p13.2 2014-03-21 2014-03-21 100422179 ENSG00000248216 OTTHUMG00000162264 NG_024585 PGOHUM00000235191 +HGNC:49915 KCTD9P6 potassium channel tetramerization domain containing 9 pseudogene 6 pseudogene pseudogene Approved 8p12 08p12 2014-03-21 2014-03-21 642513 ENSG00000229211 OTTHUMG00000163896 NG_030274 PGOHUM00000257186 +HGNC:23236 KCTD10 potassium channel tetramerization domain containing 10 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "MSTP028|BTBD28" potassium channel tetramerisation domain containing 10 BTB domain containing 861 2003-10-28 2013-06-20 2016-10-05 83892 ENSG00000110906 OTTHUMG00000169253 uc001toi.2 BC040062 NM_031954 CCDS9128 Q9H3F6 12477932 MGI:2141207 RGD:1591979 KCTD10 613421 +HGNC:49807 KCTD10P1 potassium channel tetramerization domain containing 10 pseudogene 1 pseudogene pseudogene Approved 9p21.1 09p21.1 2014-03-06 2014-03-06 100422230 ENSG00000224955 OTTHUMG00000019720 NG_023794 PGOHUM00000235998 +HGNC:21302 KCTD11 potassium channel tetramerization domain containing 11 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "REN|KCASH1" C17orf36 "chromosome 17 open reading frame 36|potassium channel tetramerisation domain containing 11" 2003-06-10 2003-11-26 2013-06-20 2016-10-05 147040 ENSG00000213859 OTTHUMG00000132061 uc002gge.5 AK056227 NM_001002914 CCDS32545 Q693B1 "12186855|21472142" MGI:2448712 RGD:1307125 KCTD11 609848 +HGNC:14678 KCTD12 potassium channel tetramerization domain containing 12 protein-coding gene gene with protein product Approved 13q22.3 13q22.3 "KIAA1778|PFET1" predominantly fetal expressed T1 domain C13orf2 "chromosome 13 open reading frame 2|potassium channel tetramerisation domain containing 12" 2001-03-14 2003-11-26 2013-06-20 2016-10-05 115207 ENSG00000178695 OTTHUMG00000017096 uc010aeu.2 AF359381 NM_138444 CCDS9455 Q96CX2 15357420 MGI:2145823 RGD:1309421 KCTD12 610521 objectId:1918 +HGNC:22234 KCTD13 potassium channel tetramerization domain containing 13 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "PDIP1|FKSG86|POLDIP1" "polymerase delta-interacting protein 1|TNFAIP1-like" potassium channel tetramerisation domain containing 13 2003-11-24 2013-06-20 2014-11-19 253980 ENSG00000174943 OTTHUMG00000132120 uc002duv.5 AF289573 NM_178863 CCDS10661 Q8WZ19 11593007 MGI:1923739 RGD:735189 KCTD13 608947 +HGNC:23295 KCTD14 potassium channel tetramerization domain containing 14 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 MGC2376 potassium channel tetramerisation domain containing 14 2003-11-05 2013-06-20 2016-10-05 65987 ENSG00000151364 OTTHUMG00000150224 uc001oyw.5 BC001062 NM_023930 "CCDS8255|CCDS60908" Q9BQ13 12477932 MGI:1289222 RGD:1306430 KCTD14 +HGNC:23297 KCTD15 potassium channel tetramerization domain containing 15 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 MGC25497 potassium channel tetramerisation domain containing 15 2003-11-05 2013-06-20 2016-10-11 79047 ENSG00000153885 OTTHUMG00000180475 uc002nuw.5 AK025590 NM_024076 "CCDS12434|CCDS46039" Q96SI1 12477932 MGI:2385276 RGD:1583737 KCTD15 615240 +HGNC:29244 KCTD16 potassium channel tetramerization domain containing 16 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 KIAA1317 potassium channel tetramerisation domain containing 16 2004-03-19 2013-06-20 2016-10-05 57528 ENSG00000183775 OTTHUMG00000163172 uc003lnm.2 AB037738 XM_098368 CCDS34260 Q68DU8 10718198 MGI:1914659 RGD:1559856 KCTD16 613423 objectId:1920 +HGNC:25705 KCTD17 potassium channel tetramerization domain containing 17 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 FLJ12242 potassium channel tetramerisation domain containing 17 2005-02-08 2013-06-20 2015-08-28 79734 ENSG00000100379 OTTHUMG00000150532 uc011amv.4 BC025403 NM_024681 "CCDS13940|CCDS74854|CCDS74855" Q8N5Z5 12477932 MGI:1920094 RGD:1311154 KCTD17 616386 +HGNC:26446 KCTD18 potassium channel tetramerization domain containing 18 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "FLJ31322|6530404F10Rik|FLJ37818" potassium channel tetramerisation domain containing 18 2005-02-08 2013-06-20 2015-08-25 130535 ENSG00000155729 OTTHUMG00000132781 uc002uvs.4 AK055884 NM_152387 CCDS2330 Q6PI47 MGI:3603813 RGD:1564820 KCTD18 +HGNC:24753 KCTD19 potassium channel tetramerization domain containing 19 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ40162 potassium channel tetramerisation domain containing 19 2005-02-08 2013-06-20 2014-11-19 146212 ENSG00000168676 OTTHUMG00000173075 uc002esu.3 AK097481 XM_085367 CCDS42179 Q17RG1 MGI:3045294 RGD:1561326 KCTD19 +HGNC:21052 KCTD20 potassium channel tetramerization domain containing 20 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "dJ108K11.3|MGC14254" C6orf69 "chromosome 6 open reading frame 69|potassium channel tetramerisation domain containing 20" 2003-05-12 2006-06-26 2013-06-20 2014-11-18 222658 ENSG00000112078 OTTHUMG00000014597 uc003ome.4 BC023525 NM_173562 "CCDS4821|CCDS69096|CCDS69097" Q7Z5Y7 MGI:1914239 RGD:1309887 KCTD20 615932 +HGNC:27452 KCTD21 potassium channel tetramerization domain containing 21 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 KCASH2 potassium channel tetramerisation domain containing 21 2006-07-03 2013-06-20 2015-08-25 283219 ENSG00000188997 OTTHUMG00000166497 uc001ozb.4 AK095233 NM_001029859 CCDS31645 Q4G0X4 21472142 MGI:3643121 RGD:1559529 KCTD21 +HGNC:48674 KCTD21-AS1 KCTD21 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q14.1 11q14.1 2013-06-06 2013-06-06 100289388 ENSG00000246174 OTTHUMG00000166595 NR_102280 +HGNC:19350 KDELC1 KDEL motif containing 1 protein-coding gene gene with protein product Approved 13q33.1 13q33.1 "MGC5302|EP58" KDEL (Lys-Asp-Glu-Leu) containing 1 Glycosyltransferase family 90 443 2002-12-16 2015-12-11 2016-10-05 79070 ENSG00000134901 OTTHUMG00000017307 uc001vpq.5 BC001297 NM_024089 CCDS9504 Q6UW63 MGI:1919300 RGD:1304684 KDELC1 611613 +HGNC:39193 KDELC1P1 KDEL motif containing 1 pseudogene 1 pseudogene pseudogene Approved 5q23.3 05q23.3 KDEL (Lys-Asp-Glu-Leu) containing 1 pseudogene 1 2010-11-18 2015-12-11 2015-12-11 100144494 ENSG00000250329 OTTHUMG00000163270 NG_007523 PGOHUM00000235750 +HGNC:28496 KDELC2 KDEL motif containing 2 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 MGC33424 KDEL (Lys-Asp-Glu-Leu) containing 2 Glycosyltransferase family 90 443 2004-07-27 2015-12-11 2016-10-05 143888 ENSG00000178202 OTTHUMG00000166535 uc001pkj.3 AF533708 NM_153705 CCDS41711 Q7Z4H8 12975309 MGI:1923765 RGD:1562027 KDELC2 +HGNC:6304 KDELR1 KDEL endoplasmic reticulum protein retention receptor 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "ERD2.1|ERD2|HDEL" KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1 1999-08-20 2015-12-11 2015-12-11 10945 ENSG00000105438 OTTHUMG00000183215 uc002pjb.1 X55885 NM_006801 CCDS12718 P24390 2172835 MGI:1915387 RGD:1306764 KDELR1 131235 +HGNC:6305 KDELR2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "ELP-1|ERD2.2" KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 1999-08-20 2015-12-11 2016-10-11 11014 ENSG00000136240 OTTHUMG00000023103 uc003sqe.5 X63745 NM_006854 "CCDS5351|CCDS43550" P33947 "1316805|1325562" MGI:1914163 RGD:1304618 KDELR2 609024 +HGNC:6306 KDELR3 KDEL endoplasmic reticulum protein retention receptor 3 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3 1999-08-19 2015-12-11 2016-10-11 11015 ENSG00000100196 OTTHUMG00000153520 uc003avv.4 AL035081 NM_006855 "CCDS13972|CCDS46705" O43731 MGI:2145953 RGD:1311536 KDELR3 +HGNC:26624 KDF1 keratinocyte differentiation factor 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "FLJ34633|RP11-344H11.3" C1orf172 chromosome 1 open reading frame 172 2005-07-21 2014-04-29 2014-04-29 2014-11-18 126695 ENSG00000175707 OTTHUMG00000004272 AK091952 NM_152365 CCDS293 Q8NAX2 "12477932|24075906" MGI:1916323 RGD:1303271 616758 +HGNC:29079 KDM1A lysine demethylase 1A protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "KIAA0601|BHC110|LSD1" "AOF2|KDM1" "amine oxidase (flavin containing) domain 2|lysine (K)-specific demethylase 1" Lysine demethylases 485 2004-02-26 2009-09-29 2016-02-12 2016-02-12 23028 ENSG00000004487 OTTHUMG00000003220 uc001bgi.3 AL031428 NM_015013 "CCDS30627|CCDS53278" O60341 "9628581|12493763" MGI:1196256 RGD:1562975 KDM1A 609132 objectId:2669 +HGNC:21577 KDM1B lysine demethylase 1B protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "FLJ34109|FLJ33898|dJ298J15.2|bA204B7.3|FLJ43328|LSD2" "C6orf193|AOF1" "amine oxidase, flavin containing 1|chromosome 6 open reading frame 193|amine oxidase (flavin containing) domain 1|lysine (K)-specific demethylase 1B" "Zinc fingers CW-type|Lysine demethylases" "96|485" 2003-06-25 2009-09-29 2016-02-12 2016-02-12 221656 ENSG00000165097 OTTHUMG00000014316 uc003ncn.2 AK125318 NM_153042 CCDS34343 Q8NB78 "19407342|19727073" MGI:2145261 RGD:1310701 KDM1B 613081 objectId:2670 +HGNC:13606 KDM2A lysine demethylase 2A protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "KIAA1004|FBL11|LILINA|DKFZP434M1735|FBL7|FLJ00115|CXXC8|JHDM1A" "F-box protein FBL11|jumonji C domain-containing histone demethylase 1A" FBXL11 "F-box and leucine-rich repeat protein 11|lysine (K)-specific demethylase 2A" "PHD finger proteins|Zinc fingers CXXC-type|Lysine demethylases|F-box and leucine rich repeat proteins" "88|136|485|558" 2000-09-27 2009-04-06 2016-02-12 2016-10-05 22992 ENSG00000173120 OTTHUMG00000167103 uc001ojw.4 BC047486 NM_012308 "CCDS44657|CCDS58148" Q9Y2K7 "10231032|10531037" MGI:1354736 RGD:1309419 KDM2A 605657 objectId:2671 +HGNC:13610 KDM2B lysine demethylase 2B protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "PCCX2|CXXC2|Fbl10|JHDM1B" jumonji C domain-containing histone demethylase 1B FBXL10 "F-box and leucine-rich repeat protein 10|lysine (K)-specific demethylase 2B" "PHD finger proteins|Zinc fingers CXXC-type|Lysine demethylases|F-box and leucine rich repeat proteins" "88|136|485|558" 2004-01-06 2009-04-06 2016-02-12 2016-02-12 84678 ENSG00000089094 OTTHUMG00000169071 uc058uhq.1 AJ459424 NM_032590 "CCDS41849|CCDS41850" Q8NHM5 10799292 MGI:1354737 RGD:1310217 KDM2B 609078 objectId:2672 +HGNC:20815 KDM3A lysine demethylase 3A protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "TSGA|KIAA0742|JHMD2A" jumonji C domain-containing histone demethylase 2A "JMJD1|JMJD1A" "jumonji domain containing 1|jumonji domain containing 1A|lysine (K)-specific demethylase 3A" Lysine demethylases 485 2003-04-09 2009-04-06 2016-02-12 2016-02-12 55818 ENSG00000115548 OTTHUMG00000130204 uc061lmi.1 AB018285 NM_018433 CCDS1990 Q9Y4C1 9872452 MGI:98847 RGD:708351 KDM3A 611512 objectId:2673 +HGNC:1337 KDM3B lysine demethylase 3B protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "KIAA1082|NET22" "C5orf7|JMJD1B" "chromosome 5 open reading frame 7|jumonji domain containing 1B|lysine (K)-specific demethylase 3B" Lysine demethylases 485 2000-07-21 2009-04-06 2016-02-12 2016-10-05 51780 ENSG00000120733 OTTHUMG00000163469 uc003lcy.1 AF251039 NM_016604 CCDS34242 Q7LBC6 15138608 MGI:1923356 RGD:1583423 KDM3B 609373 objectId:2674 +HGNC:22978 KDM4A lysine demethylase 4A protein-coding gene gene with protein product Approved 1p34.2-p34.1 01p34.2-p34.1 "KIAA0677|JHDM3A|TDRD14A" "jumonji C domain-containing histone demethylase 3A|tudor domain containing 14A" "JMJD2|JMJD2A" "jumonji domain containing 2|jumonji domain containing 2A|lysine (K)-specific demethylase 4A" "Lysine demethylases|Tudor domain containing" "485|780" 2003-08-08 2009-04-06 2016-02-12 2016-10-11 9682 ENSG00000066135 OTTHUMG00000007560 uc001cjx.4 AB014577 NM_014663 CCDS491 O75164 "9734811|15138608" MGI:2446210 RGD:1306378 KDM4A 609764 objectId:2675 +HGNC:40528 KDM4A-AS1 KDM4A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p34.2-p34.1 01p34.2-p34.1 KDM4A antisense RNA 1 (non-protein coding) 2012-06-22 2012-08-15 2016-10-11 100132774 ENSG00000236200 OTTHUMG00000007557 uc001cjy.6 BC073819 NR_033827 +HGNC:29136 KDM4B lysine demethylase 4B protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "KIAA0876|TDRD14B" tudor domain containing 14B JMJD2B "jumonji domain containing 2B|lysine (K)-specific demethylase 4B" "Lysine demethylases|Tudor domain containing" "485|780" 2004-01-14 2009-04-06 2016-02-12 2016-02-12 23030 ENSG00000127663 OTTHUMG00000180281 uc002mbq.5 AB020683 NM_015015 CCDS12138 O94953 "10048485|15138608" MGI:2442355 RGD:1588576 KDM4B 609765 objectId:2676 +HGNC:17071 KDM4C lysine demethylase 4C protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "GASC1|KIAA0780|TDRD14C" tudor domain containing 14C JMJD2C "jumonji domain containing 2C|lysine (K)-specific demethylase 4C" "Lysine demethylases|Tudor domain containing" "485|780" 2004-01-14 2009-04-06 2016-02-12 2016-10-05 23081 ENSG00000107077 OTTHUMG00000019536 uc003zkh.4 AB018323 NM_015061 "CCDS6471|CCDS55285|CCDS55286|CCDS78379" Q9H3R0 "9872452|15138608" MGI:1924054 RGD:1307528 KDM4C 605469 objectId:2677 +HGNC:25498 KDM4D lysine demethylase 4D protein-coding gene gene with protein product Approved 11q21 11q21 FLJ10251 JMJD2D "jumonji domain containing 2D|lysine (K)-specific demethylase 4D" Lysine demethylases 485 2004-01-14 2009-04-06 2016-02-12 2016-02-12 55693 ENSG00000186280 OTTHUMG00000167838 uc001pfe.4 AK001113 NM_018039 CCDS8302 Q6B0I6 15138608 MGI:3606484 RGD:1591045 KDM4D 609766 objectId:2678 +HGNC:37098 KDM4E lysine demethylase 4E protein-coding gene gene with protein product Approved 11q21 11q21 JMJD2E KDM4DL "lysine (K)-specific demethylase 4D-like|lysine (K)-specific demethylase 4E" Lysine demethylases 485 2009-06-12 2012-03-28 2016-02-12 2016-02-12 390245 ENSG00000235268 OTTHUMG00000167858 uc010ruf.1 BC157851 NM_001161630 CCDS44713 B2RXH2 21076780 KDM4E 616581 objectId:2679 +HGNC:9886 KDM5A lysine demethylase 5A protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "RBBP2|JARID1A" "retinoblastoma-binding protein 2|Jumonji, AT rich interactive domain 1A (RBBP2-like)|jumonji, AT rich interactive domain 1A|lysine (K)-specific demethylase 5A" "PHD finger proteins|AT-rich interaction domain containing|Lysine demethylases|EMSY complex" "88|418|485|1243" 1992-09-17 2009-04-06 2016-02-12 2016-02-12 5927 ENSG00000073614 OTTHUMG00000168055 uc001qif.3 NM_005056 CCDS41736 P29375 1857421 MGI:2136980 RGD:1305429 KDM5A 180202 objectId:2680 +HGNC:18039 KDM5B lysine demethylase 5B protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "RBBP2H1A|PLU-1|CT31|PPP1R98" "cancer/testis antigen 31|protein phosphatase 1, regulatory subunit 98" JARID1B "Jumonji, AT rich interactive domain 1B (RBP2-like)|jumonji, AT rich interactive domain 1B|lysine (K)-specific demethylase 5B" "PHD finger proteins|AT-rich interaction domain containing|Lysine demethylases" "88|418|485" 2004-01-28 2009-04-06 2016-02-12 2016-02-12 10765 ENSG00000117139 OTTHUMG00000041401 uc001gyf.4 AJ243706 NM_006618 "CCDS30974|CCDS81417" Q9UGL1 "11483573|11478881" MGI:1922855 RGD:1565602 KDM5B 605393 objectId:2681 +HGNC:11114 KDM5C lysine demethylase 5C protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "DXS1272E|XE169" "SMCX|JARID1C|MRX13" "Jumonji, AT rich interactive domain 1C (RBP2-like)|Smcy homolog, X-linked (mouse)|jumonji, AT rich interactive domain 1C|mental retardation, X-linked 13|lysine (K)-specific demethylase 5C" "PHD finger proteins|X-linked mental retardation|AT-rich interaction domain containing|Lysine demethylases" "88|103|418|485" 1999-04-23 2009-04-06 2016-02-12 2016-10-05 8242 ENSG00000126012 OTTHUMG00000021606 uc004drz.4 Z29650 NM_004187 "CCDS14351|CCDS55417|CCDS65269" P41229 "7951230|8162017|19826449" MGI:99781 RGD:1560601 KDM5C database at LOVD|http://www.LOVD.nl/KDM5C KDM5C 314690 122732 objectId:2682 +HGNC:41384 KDM5C-IT1 KDM5C intronic transcript 1 non-coding RNA RNA, long non-coding Approved Xp11.22 Xp11.22 KDM5C intronic transcript 1 (non-protein coding) 2011-05-23 2015-02-25 2015-02-25 100874299 ENSG00000235262 OTTHUMG00000021604 uc064zkj.1 +HGNC:11115 KDM5D lysine demethylase 5D protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 KIAA0234 "HYA|HY|SMCY|JARID1D" "Jumonji, AT rich interactive domain 1D (RBP2-like)|Smcy homolog, Y-linked (mouse)|jumonji, AT rich interactive domain 1D|lysine (K)-specific demethylase 5D" "PHD finger proteins|AT-rich interaction domain containing|Lysine demethylases|Minor histocompatibility antigens" "88|418|485|870" 1999-04-23 2009-04-06 2016-02-12 2016-10-05 8284 ENSG00000012817 OTTHUMG00000036508 uc011naz.3 U52191 NM_004653 "CCDS14794|CCDS55554|CCDS55555" Q9BY66 "795123|8841177" MGI:99780 RGD:2314436 KDM5D 426000 objectId:2683 +HGNC:23976 KDM5DP1 lysine demethylase 5D pseudogene 1 pseudogene pseudogene Approved Yq11.223 Yq11.223 SMCYP Smcy homolog, Y chromosome (mouse) pseudogene lysine (K)-specific demethylase 5D pseudogene 1 2009-12-17 2016-02-12 2016-10-11 359796 ENSG00000277438 OTTHUMG00000188101 NG_002818 12815422 PGOHUM00000233789 +HGNC:12637 KDM6A lysine demethylase 6A protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 UTX "ubiquitously transcribed tetratricopeptide repeat, X chromosome|lysine (K)-specific demethylase 6A" "Lysine demethylases|Tetratricopeptide repeat domain containing" "485|769" 1998-08-05 2009-04-17 2016-02-12 2016-10-12 7403 ENSG00000147050 OTTHUMG00000021402 uc004dge.5 AF000992 NM_021140 CCDS14265 O15550 "9499428|9381176" MGI:1095419 RGD:1565481 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=UTX|LRG_616|http://www.lrg-sequence.org/LRG/LRG_616" KDM6A 300128 290568 objectId:2684 +HGNC:29012 KDM6B lysine demethylase 6B protein-coding gene gene with protein product Approved 17p13.1 17p13.1 KIAA0346 JMJD3 "jumonji domain containing 3|jumonji domain containing 3, histone lysine demethylase|lysine (K)-specific demethylase 6B" Lysine demethylases 485 2004-02-27 2009-04-17 2016-02-12 2016-02-12 23135 ENSG00000132510 OTTHUMG00000178021 uc002giw.2 AB002344 XM_043272 CCDS32552 O15054 "10662545|9205841" MGI:2448492 RGD:1307629 KDM6B 611577 objectId:2685 +HGNC:22224 KDM7A lysine demethylase 7A protein-coding gene gene with protein product Approved 7q34 07q34 KIAA1718 JHDM1D "jumonji C domain containing histone demethylase 1 homolog D (S. cerevisiae)|lysine (K)-specific demethylase 7A" "PHD finger proteins|Lysine demethylases" "88|485" 2007-03-26 2013-11-04 2016-02-12 2016-02-12 80853 ENSG00000006459 OTTHUMG00000157327 NM_030647 CCDS43658 Q6ZMT4 "20023638|20084082" MGI:2443388 RGD:1592650 objectId:2686 +HGNC:25840 KDM8 lysine demethylase 8 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 FLJ13798 JMJD5 "jumonji domain containing 5|lysine (K)-specific demethylase 8" Lysine demethylases 485 2006-02-17 2012-03-28 2016-02-12 2016-02-12 79831 ENSG00000155666 OTTHUMG00000131677 uc002doh.3 AK023860 NM_024773 "CCDS10627|CCDS45448" Q8N371 20457893 MGI:1924285 RGD:1304823 611917 objectId:2687 +HGNC:6307 KDR kinase insert domain receptor protein-coding gene gene with protein product Approved 4q12 04q12 "FLK1|VEGFR|VEGFR2|CD309" "vascular endothelial growth factor receptor 2|fetal liver kinase 1" kinase insert domain receptor (a type III receptor tyrosine kinase) "Receptor Tyrosine Kinases|CD molecules|V-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "321|471|590|593|594" 1991-07-10 2014-12-19 2016-10-05 3791 ENSG00000128052 OTTHUMG00000128734 uc003has.4 AF035121 NM_002253 CCDS3497 P35968 1417831 MGI:96683 RGD:2965 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=KDR KDR 191306 229801 objectId:1813 CD309 2.7.10.1 +HGNC:4021 KDSR 3-ketodihydrosphingosine reductase protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "DHSR|SDR35C1" "3-dehydrosphinganine reductase|short chain dehydrogenase/reductase family 35C, member 1" FVT1 follicular lymphoma variant translocation 1 Short chain dehydrogenase/reductase superfamily 743 1993-12-10 2008-02-20 2008-02-20 2016-10-05 2531 ENSG00000119537 OTTHUMG00000132792 uc010dpw.4 XM_005266677 CCDS11982 Q06136 "8417785|15328338|17420465|19027726" MGI:1918000 RGD:1307775 KDSR 136440 objectId:2463 1.1.1.102 +HGNC:23177 KEAP1 kelch like ECH associated protein 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "KIAA0132|MGC10630|MGC1114|MGC20887|MGC4407|MGC9454|INrf2|KLHL19" kelch-like family member 19 "Kelch like|BTB domain containing" "617|861" 2003-09-30 2015-11-23 2015-11-23 9817 ENSG00000079999 OTTHUMG00000180579 uc002mor.2 AF361886 NM_012289 CCDS12239 Q14145 MGI:1858732 RGD:621619 KEAP1 606016 objectId:2757 +HGNC:6308 KEL Kell blood group, metallo-endopeptidase protein-coding gene gene with protein product Approved 7q34 07q34 "ECE3|CD238" "Kell blood group|Kell blood group, metalloendopeptidase" "Blood group antigens|CD molecules" "454|471" 2001-06-22 2006-10-10 2016-10-12 3792 ENSG00000197993 OTTHUMG00000157159 uc003wcb.4 BC003135 NM_000420 CCDS34766 P23276 "1712490|7683930" MGI:1346053 RGD:1565470 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_799|http://www.lrg-sequence.org/LRG/LRG_799" KEL 613883 M13.090 CD238 3.4.24.- +HGNC:6309 KERA keratocan protein-coding gene gene with protein product Approved 12q21.33 12q21.33 SLRR2B keratocan proteoglycan CNA2 Small leucine rich repeat proteoglycans 573 1999-08-26 2016-10-12 11081 ENSG00000139330 OTTHUMG00000170073 uc001tbl.4 AF063301 NM_007035 CCDS9037 O60938 "10565548|10802664" MGI:1202398 RGD:1305816 LRG_538|http://www.lrg-sequence.org/LRG/LRG_538 KERA 603288 122825 +HGNC:6311 KFM Klippel-Feil malformation phenotype phenotype only Approved reserved reserved KFS 1994-01-05 2011-02-10 +HGNC:21366 KHDC1 KH homology domain containing 1 protein-coding gene gene with protein product Approved 6q13 06q13 "MGC10818|bA257K9.4|NDG1|Em:AC019205.8" "C6orf148|C6orf147" "chromosome 6 open reading frame 148|chromosome 6 open reading frame 147" 2003-07-08 2007-11-13 2007-11-13 2014-11-19 80759 ENSG00000135314 OTTHUMG00000015030 uc003pgn.5 NM_030568 "CCDS43480|CCDS59027" Q4VXA5 17913455 "MGI:2676610|MGI:2138477|MGI:3583007" RGD:1597396 KHDC1 611688 +HGNC:37274 KHDC1L KH domain containing 1 like protein-coding gene gene with protein product Approved 6q13 06q13 RP11-257K9.7 2009-10-02 2016-06-13 2016-06-13 100129128 ENSG00000256980 OTTHUMG00000132474 uc003pgm.5 BC004267 NM_001126063 CCDS47450 Q5JSQ8 "MGI:2676610|MGI:2138477|MGI:3583007" KHDC1L +HGNC:43757 KHDC1P1 KH homology domain containing 1 pseudogene 1 pseudogene pseudogene Approved 6q13 06q13 2012-02-22 2012-02-22 653194 ENSG00000251360 OTTHUMG00000132475 17913455 +HGNC:33699 KHDC3L KH domain containing 3 like, subcortical maternal complex member protein-coding gene gene with protein product Approved 6q13 06q13 ECAT1 ES cell associated transcript 1 C6orf221 "chromosome 6 open reading frame 221|KH domain containing 3-like, subcortical maternal complex member" 2007-11-15 2012-06-25 2016-02-25 2016-02-25 154288 ENSG00000203908 OTTHUMG00000015024 uc003pgt.5 AB211062 NM_001017361 CCDS34484 Q587J8 21885028 MGI:1914241 RGD:1311617 611687 287584 +HGNC:18116 KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "Sam68|p62|FLJ34027" "GAP-associated tyrosine phosphoprotein p62|Src-associated in mitosis 68 kDa protein" Signal transduction and activation of RNA metabolism family 1275 2002-02-28 2016-05-23 2016-10-05 10657 ENSG00000121774 OTTHUMG00000003921 uc001bub.5 U78971 NM_006559 "CCDS350|CCDS60067" Q07666 "1374686|10564820" MGI:893579 RGD:621459 KHDRBS1 602489 +HGNC:18114 KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 protein-coding gene gene with protein product Approved 6q11.1 06q11.1 "SLM1|SLM-1|MGC26664" Sam68-like mammalian protein 1 Signal transduction and activation of RNA metabolism family 1275 2002-02-28 2016-05-23 2016-05-23 202559 ENSG00000112232 OTTHUMG00000014936 uc003peg.3 BC034043 NM_152688 CCDS4963 Q5VWX1 MGI:2159649 RGD:621738 KHDRBS2 610487 +HGNC:18117 KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 protein-coding gene gene with protein product Approved 8q24.23 08q24.23 "T-STAR|Etle|etoile|SALP|SLM2|SLM-2" KH domain containing, RNA binding, signal transduction associated 3 Signal transduction and activation of RNA metabolism family 1275 2002-02-28 2016-05-23 2016-05-23 10656 ENSG00000131773 OTTHUMG00000164164 uc003yuv.4 AF069681 XM_011516796 CCDS6374 O75525 "10332027|10564820" MGI:1313312 RGD:620921 KHDRBS3 610421 +HGNC:6315 KHK ketohexokinase protein-coding gene gene with protein product Approved 2p23.3 02p23.3 fructokinase ketohexokinase (fructokinase) 1994-12-19 2015-11-05 2015-11-05 3795 ENSG00000138030 OTTHUMG00000097077 uc002rim.3 XM_006712008 "CCDS1734|CCDS1735" P50053 7833921 MGI:1096353 RGD:2966 KHK 614058 122829 2.7.1.3 +HGNC:20166 KHNYN KH and NYN domain containing protein-coding gene gene with protein product Approved 14q12 14q12 KIAA0323 KIAA0323 2003-11-21 2009-10-14 2009-10-14 2016-10-11 23351 ENSG00000100441 OTTHUMG00000171312 uc010tpc.3 AB002321 XM_011536590 CCDS32058 O15037 17114934 MGI:2451333 RGD:1565688 KHNYN +HGNC:6316 KHSRP KH-type splicing regulatory protein protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "KSRP|FBP2|FUBP2" FUSE binding protein 2 1998-11-17 2008-02-04 2014-11-19 8570 ENSG00000088247 OTTHUMG00000180850 uc002mer.5 U94832 XM_005259668 CCDS45936 Q92945 "9136930|8940189" MGI:1336214 RGD:621828 KHSRP 603445 +HGNC:39198 KHSRPP1 KH-type splicing regulatory protein pseudogene 1 pseudogene pseudogene Approved 9p21.3 09p21.3 2010-11-23 2012-10-16 402359 ENSG00000229835 OTTHUMG00000019683 NG_006557 PGOHUM00000263229 +HGNC:28950 KIAA0040 KIAA0040 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 2005-03-17 2016-09-30 9674 ENSG00000235750 OTTHUMG00000034880 uc001gko.4 D25539 NM_014656 Q15053 24829844 MGI:1914897 RGD:2311260 KIAA0040 616696 +HGNC:22191 KIAA0087 KIAA0087 other unknown Approved 7p15.2 07p15.2 2007-07-23 2016-09-30 9808 ENSG00000122548 OTTHUMG00000023321 uc003sya.3 BC128257 NR_022006 Q14695 +HGNC:28960 KIAA0100 KIAA0100 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "DKFZp686M0843|MGC111488|BCOX1|CT101|BCOX|FMP27" "cancer/testis antigen 101|breast cancer overexpressed gene 1" 2005-11-22 2016-09-30 9703 ENSG00000007202 OTTHUMG00000166587 uc002hbu.4 D43947 NM_014680 CCDS32595 Q14667 16289875 MGI:1919753 RGD:1307929 KIAA0100 610664 +HGNC:28961 KIAA0101 KIAA0101 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "NS5ATP9|OEATC-1|p15(PAF)|PAF15" PCNA-associated factor 2004-06-24 2016-10-11 9768 ENSG00000166803 OTTHUMG00000133017 uc002ank.5 D14657 NM_014736 "CCDS10193|CCDS32269" Q15004 "11313979|16288740" MGI:1915276 RGD:1303041 KIAA0101 610696 +HGNC:28969 KIAA0141 KIAA0141 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 DELE death ligand signal enhancer 2004-12-08 2016-10-05 9812 ENSG00000081791 OTTHUMG00000129662 uc003llt.4 BC011269 NM_014773 CCDS4268 Q14154 20563667 MGI:1914089 RGD:735029 KIAA0141 615741 +HGNC:28984 KIAA0196 KIAA0196 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 strumpellin SPG8 spastic paraplegia 8 (autosomal dominant) WASH complex 1331 2005-07-19 2016-10-05 9897 ENSG00000164961 OTTHUMG00000164991 uc003yrt.4 NM_014846 "CCDS6355|CCDS83325" Q12768 "9973294|17160902|23085491" MGI:2146110 RGD:1564420 KIAA0196 610657 122831 +HGNC:43440 KIAA0196-AS1 KIAA0196 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 KIAA0196 antisense RNA 1 (non-protein coding) 2011-10-28 2012-08-15 2012-10-12 106479020 ENSG00000253167 OTTHUMG00000164992 uc064qbo.1 +HGNC:28992 KIAA0232 KIAA0232 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2007-07-23 2016-09-30 9778 ENSG00000170871 OTTHUMG00000160072 uc003gjq.5 D86985 NM_014743 CCDS43209 Q92628 9039502 MGI:1261849 RGD:1596848 KIAA0232 +HGNC:21580 KIAA0319 KIAA0319 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 NMIG neuronal migration 2003-11-21 2016-09-30 9856 ENSG00000137261 OTTHUMG00000014358 uc003neh.2 AB002317 NM_014809 "CCDS34348|CCDS54969|CCDS54970|CCDS54971|CCDS75409" Q5VV43 "9205841|15514892" MGI:3036268 RGD:1307443 KIAA0319 609269 +HGNC:30071 KIAA0319L KIAA0319 like protein-coding gene gene with protein product Approved 1p34.3 01p34.3 KIAA1837 KIAA0319-like 2005-04-01 2016-01-21 2016-06-16 79932 ENSG00000142687 OTTHUMG00000004370 uc001byx.4 AY163234 NM_024874 CCDS390 Q8IZA0 "11347906|26814968" MGI:2140475 RGD:2306719 KIAA0319L 613535 364825 +HGNC:29016 KIAA0355 KIAA0355 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 2004-02-09 2016-10-05 9710 ENSG00000166398 OTTHUMG00000180505 uc002nvd.5 NM_014686 CCDS12436 O15063 9205841 MGI:1924311 RGD:1308428 KIAA0355 +HGNC:29020 KIAA0368 KIAA0368 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "FLJ22036|ECM29" ECM29 homolog (S. cerevisiae) 2004-01-27 2006-11-23 2006-11-23 2016-10-05 23392 ENSG00000136813 OTTHUMG00000020489 uc004bfe.1 AK025689 NM_014686 CCDS48006 Q5VYK3 "9205841|15496406|20682791" MGI:2140220 RGD:1306148 KIAA0368 616694 +HGNC:19958 KIAA0391 KIAA0391 protein-coding gene gene with protein product Approved 14q13.2 14q13.2 "MRPP3|PRORP" "mitochondrial RNase P subunit 3|proteinaceous RNase P" 2003-11-21 2016-09-30 9692 ENSG00000100890 OTTHUMG00000170997 uc001wsy.3 AB002389 NM_014672 "CCDS32063|CCDS58312|CCDS58313|CCDS58314" O15091 "9205841|18984158" MGI:1913382 RGD:1305089 KIAA0391 609947 +HGNC:21636 KIAA0408 KIAA0408 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 2003-11-21 2016-09-30 9729 ENSG00000189367 OTTHUMG00000166439 uc011ebs.3 AB007868 NM_014702 CCDS34531 Q6ZU52 MGI:3036239 RGD:1307525 KIAA0408 +HGNC:29562 KIAA0430 KIAA0430 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 "LKAP|PPP1R34|Marf1" "limkain b1|protein phosphatase 1, regulatory subunit 34|meiosis arrest female 1" Protein phosphatase 1 regulatory subunits 694 2006-06-27 2016-09-30 9665 ENSG00000166783 OTTHUMG00000129884 uc002ddr.4 AB007890 NM_014647 "CCDS10562|CCDS53990|CCDS55991" Q9Y4F3 "9455477|10493829|15932519|22442484|23090997" MGI:2444505 RGD:9219913 KIAA0430 614593 +HGNC:29058 KIAA0513 KIAA0513 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 2004-08-13 2016-09-30 9764 ENSG00000135709 OTTHUMG00000176597 uc010voj.4 AB011085 NM_014732 "CCDS32499|CCDS67091|CCDS73919" O60268 17010949 MGI:2443793 RGD:1304884 KIAA0513 611675 +HGNC:29068 KIAA0556 KIAA0556 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 JBTS26 2006-08-25 2016-10-07 23247 ENSG00000047578 OTTHUMG00000176780 uc002dow.4 AB011128 NM_015202 CCDS32415 O60303 "9628581|26714646" MGI:2442760 RGD:1595846 KIAA0556 616650 448873 +HGNC:19960 KIAA0586 KIAA0586 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "Talpid3|JBTS23" 2003-11-21 2016-10-12 9786 ENSG00000100578 OTTHUMG00000171141 uc001xdv.5 AB011158 NM_014749 "CCDS45115|CCDS58320|CCDS58321|CCDS58322|CCDS73639" Q9BVV6 "16702409|26026149|26096313|26386247" MGI:1924217 RGD:1585176 LRG_1096|http://www.lrg-sequence.org/LRG/LRG_1096 KIAA0586 610178 435787 +HGNC:29110 KIAA0753 KIAA0753 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "OFIP|MNR" "moonraker|OFD1 and FOPNL interacting protein" 2005-12-13 2016-09-30 9851 ENSG00000198920 OTTHUMG00000177928 uc002gde.5 NM_014804 CCDS42247 Q2KHM9 "24613305|26297806|26643951" MGI:1921727 RGD:1304728 KIAA0753 617112 +HGNC:29111 KIAA0754 KIAA0754 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 2009-07-09 2016-09-30 643314 NM_015038 CCDS76143 O94854 9872452 MGI:3045367 RGD:2320877 KIAA0754 +HGNC:28532 KIAA0825 KIAA0825 protein-coding gene gene with protein product Approved 5q15 05q15 "DKFZp686F0372|MGC34713" C5orf36 chromosome 5 open reading frame 36 2006-11-03 2011-02-23 2011-02-23 2016-09-30 285600 ENSG00000185261 OTTHUMG00000131331 uc003kkp.3 BX648338 NM_173665 CCDS4070 Q8IV33 27381092 MGI:1919621 RGD:1560883 KIAA0825 +HGNC:22206 KIAA0895 KIAA0895 protein-coding gene gene with protein product Approved 7p14.2 07p14.2 2008-11-27 2016-09-30 23366 ENSG00000164542 OTTHUMG00000154939 uc011kax.2 BC028678 NM_015314 "CCDS43570|CCDS47573|CCDS56482|CCDS56483|CCDS56484|CCDS75583" Q8NCT3 MGI:1915533 RGD:1561444 KIAA0895 +HGNC:34408 KIAA0895L KIAA0895 like protein-coding gene gene with protein product Approved 16q22.1 16q22.1 LOC653319 2008-11-27 2016-06-13 2016-06-13 653319 ENSG00000196123 OTTHUMG00000172891 uc059vqc.1 AK092303 NM_001040715 CCDS42177 Q68EN5 MGI:1921606 RGD:1585272 KIAA0895L +HGNC:29145 KIAA0907 KIAA0907 protein-coding gene gene with protein product Approved 1q22 01q22 BLOM7 2005-07-14 2016-09-30 22889 ENSG00000132680 OTTHUMG00000014103 uc001fmi.2 BC062637 NM_014949 CCDS30885 Q7Z7F0 10048485 MGI:1921450 RGD:1565775 KIAA0907 +HGNC:29146 KIAA0922 KIAA0922 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "DKFZp586H1322|TMEM131L" 2006-02-24 2016-09-30 23240 ENSG00000121210 OTTHUMG00000153244 uc003inm.5 AK096538 NM_015196 "CCDS3783|CCDS47148" A2VDJ0 "10231032|11230166" MGI:2443399 RGD:1583677 KIAA0922 616243 +HGNC:1314 KIAA0930 KIAA0930 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 bK268H5.C22.1 C22orf9 chromosome 22 open reading frame 9 2000-03-29 2011-02-23 2011-02-23 2016-09-30 23313 ENSG00000100364 OTTHUMG00000151263 uc003bfx.2 AK025608 NM_001009880 "CCDS33665|CCDS33666" Q6ICG6 10231032 MGI:2444899 RGD:1304694 KIAA0930 +HGNC:29172 KIAA1024 KIAA1024 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 2007-12-12 2016-09-30 23251 ENSG00000169330 OTTHUMG00000172073 uc002bew.2 AB028947 NM_015206 CCDS32306 Q9UPX6 10470851 MGI:2667167 RGD:1591930 KIAA1024 +HGNC:33914 KIAA1024L KIAA1024 like protein-coding gene gene with protein product Approved 5q23.3 05q23.3 2007-12-12 2016-06-13 2016-06-13 100127206 ENSG00000186367 OTTHUMG00000163041 uc031skx.2 NM_001257308 CCDS58966 P59773 MGI:2442934 RGD:1312005 KIAA1024L +HGNC:29174 KIAA1033 KIAA1033 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 SWIP strumpellin and WASH-interacting protein WASH complex 1331 2005-03-01 2016-09-30 23325 ENSG00000136051 uc001tld.4 AB028956 NM_015275 "CCDS41826|CCDS73514" Q2M389 "20376207|20498093|21498477" MGI:2441787 RGD:1309995 KIAA1033 615748 270389 +HGNC:29192 KIAA1107 KIAA1107 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 2005-05-16 2016-09-30 23285 ENSG00000069712 OTTHUMG00000010292 uc010otd.2 AB029030 XM_034086 CCDS44172 Q9UPP5 10470851 MGI:2445097 RGD:2321418 KIAA1107 +HGNC:26953 KIAA1109 KIAA1109 protein-coding gene gene with protein product Approved 4q27 04q27 "FLJ21404|FSA|KIAA1371|Tweek" fragile site-associated 2004-07-29 2016-10-05 84162 ENSG00000138688 OTTHUMG00000150116 uc062zjm.1 AL137384 NM_020797 CCDS43267 Q2LD37 16386706 MGI:2444631 RGD:1307100 KIAA1109 611565 +HGNC:29198 KIAA1143 KIAA1143 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 2005-03-04 2016-09-30 57456 ENSG00000163807 OTTHUMG00000133088 uc011bac.3 AB032969 NM_020696 CCDS2721 Q96AT1 10574461 MGI:1913452 RGD:1311745 KIAA1143 +HGNC:29472 KIAA1147 KIAA1147 protein-coding gene gene with protein product Approved 7q34 07q34 LCHN 2006-06-30 2016-09-30 57189 ENSG00000257093 OTTHUMG00000157539 uc003vwk.3 AB032973 XR_001744838 CCDS47726 A4D1U4 MGI:2444256 RGD:1563986 KIAA1147 +HGNC:19918 KIAA1161 KIAA1161 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 NET37 2003-11-21 2016-10-05 57462 ENSG00000164976 OTTHUMG00000019816 uc033cpb.2 AB032987 XM_351807 CCDS78391 Q6NSJ0 10574461 MGI:2140300 RGD:1309821 KIAA1161 +HGNC:29209 KIAA1191 KIAA1191 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "FLJ21022|p33MONOX" 2006-01-31 2016-09-30 57179 ENSG00000122203 OTTHUMG00000130656 uc003mdw.5 BC010448 NM_020444 "CCDS4399|CCDS43402|CCDS75373" Q96A73 "10574461|10565538|21153684" MGI:1921162 RGD:1359256 KIAA1191 +HGNC:29218 KIAA1210 KIAA1210 protein-coding gene gene with protein product Approved Xq24 Xq24 2008-10-30 2016-09-30 57481 ENSG00000250423 OTTHUMG00000162980 uc004era.4 AB033036 NM_020721 CCDS48156 Q9ULL0 10574462 MGI:3705243 RGD:1587540 KIAA1210 +HGNC:29219 KIAA1211 KIAA1211 protein-coding gene gene with protein product Approved 4q12 04q12 2009-02-06 2016-09-30 57482 ENSG00000109265 OTTHUMG00000160749 uc003hbk.3 AB033037 NM_020722 CCDS43230 Q6ZU35 "10574462|11230166" MGI:2444817 RGD:1311575 KIAA1211 +HGNC:33454 KIAA1211L KIAA1211 like protein-coding gene gene with protein product Approved 2q11.2 02q11.2 MGC42367 C2orf55 chromosome 2 open reading frame 55 2007-05-08 2012-08-03 2016-05-26 2016-05-26 343990 ENSG00000196872 OTTHUMG00000153171 uc002szf.2 BC068277 NM_207362 CCDS42720 Q6NV74 MGI:1919347 RGD:1310819 +HGNC:25428 KIAA1217 KIAA1217 protein-coding gene gene with protein product Approved 10p12.2-p12.1 10p12.2-p12.1 "DKFZP761L0424|SKT" sickle tail 2004-02-04 2016-10-11 56243 ENSG00000120549 OTTHUMG00000017824 uc001iru.6 BX640796 NM_019590 "CCDS31165|CCDS41496|CCDS60501|CCDS60502|CCDS60504|CCDS60505" Q5T5P2 10574462 MGI:95454 RGD:1563437 KIAA1217 +HGNC:29231 KIAA1257 KIAA1257 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 2005-03-01 2016-09-30 57501 ENSG00000114656 OTTHUMG00000159946 uc003elj.5 AB033083 NM_020741 CCDS46905 Q9ULG3 10574462 RGD:2323785 KIAA1257 +HGNC:29618 KIAA1324 KIAA1324 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "maba1|EIG121" estrogen induced gene 121 2005-05-17 2016-09-30 57535 ENSG00000116299 OTTHUMG00000011725 uc021orb.2 AK057647 NM_020775 "CCDS794|CCDS58015" Q6UXG2 "10718198|16322283" MGI:1923930 RGD:1310209 KIAA1324 611298 +HGNC:21945 KIAA1324L KIAA1324 like protein-coding gene gene with protein product Approved 7q21.12 07q21.12 "FLJ31340|EIG121L" EIG121-like 2005-05-17 2016-06-07 2016-06-07 222223 ENSG00000164659 OTTHUMG00000153995 uc011kha.4 AK055902 NM_152748 "CCDS34677|CCDS47632" A8MWY0 MGI:2443264 RGD:1563349 KIAA1324L 614048 +HGNC:29248 KIAA1328 KIAA1328 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 hinderin 2005-01-11 2016-09-30 57536 ENSG00000150477 OTTHUMG00000178087 uc002kzz.4 AB037749 NM_020776 CCDS45855 Q86T90 15656913 MGI:2147376 RGD:1562608 KIAA1328 616480 +HGNC:24500 KIAA1429 KIAA1429 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "DKFZP434I116|fSAP121" functional spliceosome-associated protein 121 2005-09-01 2016-09-30 25962 ENSG00000164944 OTTHUMG00000164426 uc003ygo.3 AB037850 NM_015496 "CCDS34923|CCDS47894" Q69YN4 "10718198|24981863" MGI:1913435 RGD:1559904 KIAA1429 616447 +HGNC:26725 KIAA1456 KIAA1456 protein-coding gene gene with protein product Approved 8p22 08p22 FLJ36980 C8orf79 chromosome 8 open reading frame 79 2006-02-14 2011-02-23 2011-02-23 2016-09-30 57604 ENSG00000250305 OTTHUMG00000165477 uc010lsq.4 BC035082 NM_001099677 CCDS47808 "Q8N9K7|Q9P272" 23381944 MGI:2442328 RGD:1304810 KIAA1456 615666 +HGNC:29283 KIAA1462 KIAA1462 protein-coding gene gene with protein product Approved 10p11.23 10p11.23 JCAD junctional protein associated with coronary artery disease 2004-02-04 2016-10-05 57608 ENSG00000165757 OTTHUMG00000017885 uc001iux.4 AB040895 NM_020848 CCDS41500 Q9P266 "10819331|21884682" MGI:2685174 RGD:1562037 KIAA1462 614398 +HGNC:29289 KIAA1468 KIAA1468 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "HsT885|HsT3308|FLJ33841" 2004-01-04 2016-09-30 57614 ENSG00000134444 OTTHUMG00000132780 uc002lil.4 BC011992 NM_020854 CCDS11979 Q9P260 11973628 MGI:1922832 RGD:1307235 KIAA1468 +HGNC:29301 KIAA1522 KIAA1522 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 2005-06-03 2016-09-30 57648 ENSG00000162522 OTTHUMG00000008088 uc001bvu.2 AL713671 XM_006710791 "CCDS41298|CCDS55588|CCDS55589" Q9P206 10819331 MGI:2140651 RGD:1561149 KIAA1522 +HGNC:29302 KIAA1524 KIAA1524 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 CIP2A cancerous inhibitor of protein phosphatase 2A 2005-01-24 2016-09-30 57650 ENSG00000163507 OTTHUMG00000159233 uc003dxb.5 AB040957 NM_020890 CCDS33812 Q8TCG1 "10819331|24214971" MGI:2146335 RGD:1310335 KIAA1524 610643 +HGNC:22219 KIAA1549 KIAA1549 protein-coding gene gene with protein product Approved 7q34 07q34 2008-04-22 2016-09-30 57670 ENSG00000122778 OTTHUMG00000157214 uc011kqj.3 XM_011516442 "CCDS47723|CCDS56513" Q9HCM3 MGI:2669829 RGD:1306271 KIAA1549 613344 353524 +HGNC:24836 KIAA1549L KIAA1549 like protein-coding gene gene with protein product Approved 11p13 11p13 "G2|MGC34830" "C11orf69|C11orf41" "chromosome 11 open reading frame 69|chromosome 11 open reading frame 41" 2005-10-04 2012-08-09 2016-06-13 2016-06-13 25758 ENSG00000110427 OTTHUMG00000150410 uc021qfs.2 U10991 NM_012194 CCDS44565 Q6ZVL6 MGI:2181743 RGD:2323964 612297 +HGNC:25559 KIAA1551 KIAA1551 protein-coding gene gene with protein product Approved 12p11.21 12p11.21 "FLJ20696|FLJ10652|UTA2-1" C12orf35 chromosome 12 open reading frame 35 Minor histocompatibility antigens 870 2006-01-23 2012-08-14 2012-08-14 2016-09-30 55196 ENSG00000174718 OTTHUMG00000128501 uc001rks.4 AK001514 NM_018169 CCDS8725 Q9HCM1 "10997877|23079962" MGI:1914496 RGD:1309621 +HGNC:21360 KIAA1586 KIAA1586 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 2003-11-21 2016-09-30 57691 ENSG00000168116 OTTHUMG00000014915 uc003pdj.5 AB046806 NM_020931 "CCDS34480|CCDS69138" Q9HCI6 10997877 KIAA1586 +HGNC:29327 KIAA1614 KIAA1614 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 2005-05-24 2016-09-30 57710 ENSG00000135835 OTTHUMG00000035183 uc001gok.3 AB046834 XM_046531 CCDS41442 Q5VZ46 MGI:2672904 RGD:1304622 KIAA1614 +HGNC:50644 KIAA1614-AS1 KIAA1614 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q25.3 01q25.3 RP11-46A10.4 2014-06-03 2014-06-17 103344928 ENSG00000232586 OTTHUMG00000035173 AK026359 24886442 +HGNC:29335 KIAA1644 KIAA1644 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 2009-02-06 2009-02-06 2016-10-05 85352 ENSG00000138944 OTTHUMG00000030991 uc003bet.3 AB051431 NM_001099294 CCDS43025 Q3SXP7 "11258795|22120523" MGI:1919551 RGD:1566029 KIAA1644 +HGNC:29345 KIAA1671 KIAA1671 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 2009-07-09 2016-09-30 85379 ENSG00000197077 OTTHUMG00000150841 uc062clx.1 NM_001145206 CCDS46676 Q9BY89 15289310 MGI:1920194 RGD:1306556 KIAA1671 +HGNC:29350 KIAA1683 KIAA1683 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 2004-02-12 2016-09-30 80726 ENSG00000130518 OTTHUMG00000183354 uc002nin.3 AB051470 NM_025249 "CCDS32958|CCDS46017|CCDS46018" Q9H0B3 "11214970|11230166" RGD:7549926 KIAA1683 +HGNC:29372 KIAA1755 KIAA1755 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 RP5-1054A22.3 2007-12-07 2016-09-30 85449 ENSG00000149633 OTTHUMG00000032436 uc002xhy.2 AB051542 NM_001029864 CCDS33467 Q5JYT7 11214970 MGI:3606579 RGD:1563354 KIAA1755 +HGNC:29387 KIAA1841 KIAA1841 protein-coding gene gene with protein product Approved 2p15 02p15 2006-03-23 2016-09-30 84542 ENSG00000162929 OTTHUMG00000187089 uc002saw.5 BC070104 NM_032506 "CCDS1867|CCDS46296|CCDS82456" Q6NSI8 11347906 MGI:1918925 RGD:1305110 KIAA1841 +HGNC:23427 KIAA1958 KIAA1958 protein-coding gene gene with protein product Approved 9q32 09q32 FLJ39294 2003-11-18 2016-10-05 158405 ENSG00000165185 OTTHUMG00000020508 uc064vco.1 AB075838 NM_133465 "CCDS35108|CCDS69642" Q8N8K9 MGI:2442164 RGD:1310951 KIAA1958 +HGNC:51250 KIAA2012 KIAA2012 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 2014-09-17 2016-10-11 100652824 ENSG00000182329 OTTHUMG00000154580 NM_001277372 CCDS74631 Q0VF49 MGI:2685819 RGD:1562029 +HGNC:28513 KIAA2013 KIAA2013 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "MGC33867|RP5-1077B9.1" 2005-07-13 2016-09-30 90231 ENSG00000116685 OTTHUMG00000002391 uc001atk.4 AB095933 NM_138346 CCDS141 Q8IYS2 12477932 MGI:1924284 RGD:1305350 KIAA2013 +HGNC:29433 KIAA2022 KIAA2022 protein-coding gene gene with protein product Approved Xq13.3 Xq13.3 "XPN|MRX98" XLMR-related protein, neurite extension X-linked mental retardation 103 2007-03-26 2016-09-30 340533 ENSG00000050030 OTTHUMG00000021860 uc004eby.4 NM_001008537 CCDS35337 Q5QGS0 "15466006|23615299" MGI:2148050 RGD:1561931 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KIAA2022 KIAA2022 300524 122838 +HGNC:23378 KIAA2026 KIAA2026 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 FLJ20375 2003-11-21 2016-09-30 158358 ENSG00000183354 OTTHUMG00000019507 uc003zjq.5 AB095946 NM_001017969 Q5HYC2 MGI:2444398 RGD:1311595 KIAA2026 +HGNC:29508 KIDINS220 kinase D-interacting substrate 220kDa protein-coding gene gene with protein product Approved 2p25.1 02p25.1 ARMS ankyrin repeat-rich membrane-spanning protein kinase D-interacting substrate, 220kDa Ankyrin repeat domain containing 403 2008-11-25 2015-11-09 2016-10-05 57498 ENSG00000134313 OTTHUMG00000151658 uc002qzc.2 AK025528 NM_020738 CCDS42650 Q9ULH0 "10998417|10574462" MGI:1924730 RGD:619949 KIDINS220 615759 +HGNC:888 KIF1A kinesin family member 1A protein-coding gene gene with protein product Approved 2q37.3 02q37.3 UNC104 "ATSV|C2orf20|SPG30" "axonal transport of synaptic vesicles|chromosome 2 open reading frame 20|spastic paraplegia 30 (autosomal recessive)" "Kinesins|Pleckstrin homology domain containing" "622|682" 1995-12-18 2004-01-14 2004-01-09 2016-10-12 547 ENSG00000130294 OTTHUMG00000151940 uc031rsb.2 AF004425 NM_138483 "CCDS46561|CCDS58757" Q12756 "7539720|10323250|22258533" MGI:108391 RGD:1304996 LRG_367|http://www.lrg-sequence.org/LRG/LRG_367 KIF1A 601255 279771 +HGNC:16636 KIF1B kinesin family member 1B protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "KIAA0591|KLP|HMSNII" "CMT2A|CMT2" "Kinesins|Pleckstrin homology domain containing" "622|682" 2001-11-14 2016-10-12 23095 ENSG00000054523 OTTHUMG00000001817 uc001aqw.5 AF257176 NM_015074 "CCDS111|CCDS112" O60333 "11389829|10762626" MGI:108426 RGD:621520 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_252|http://www.lrg-sequence.org/LRG/LRG_252" KIF1B 605995 122840 +HGNC:23419 KIF1BP KIF1 binding protein protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "DKFZP586B0923|TTC20|KBP" kinesin binding protein KIAA1279 KIAA1279 Tetratricopeptide repeat domain containing 769 2003-11-21 2015-03-27 2015-03-27 2015-08-25 26128 ENSG00000198954 OTTHUMG00000018363 BC012180 NM_015634 CCDS7284 Q96EK5 "15883926|16225668" MGI:1919570 RGD:1593126 609367 122834 +HGNC:6317 KIF1C kinesin family member 1C protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "SPAX2|SPG58" SAX2 spastic ataxia 2 (autosomal recessive) Kinesins 622 1998-09-25 2015-08-28 10749 ENSG00000129250 OTTHUMG00000099451 uc002gan.3 U91329 XM_005256424 CCDS11065 O43896 "9685376|24319291|24482476" MGI:1098260 RGD:70928 KIF1C 603060 398212 +HGNC:6318 KIF2A kinesin family member 2A protein-coding gene gene with protein product Approved 5q12.1 05q12.1 HK2 KIF2 kinesin heavy chain member 2 Kinesins 622 1997-05-09 2006-09-26 2016-06-13 2016-10-05 3796 ENSG00000068796 OTTHUMG00000097755 uc003jsy.5 BC031828 NM_004520 "CCDS3980|CCDS47216|CCDS58949" O00139 9177777 MGI:108390 RGD:70974 KIF2A 602591 +HGNC:29443 KIF2B kinesin family member 2B protein-coding gene gene with protein product Approved 17q22 17q22 Kinesins 622 2005-02-07 2014-08-12 84643 ENSG00000141200 OTTHUMG00000177756 uc002iua.3 AF333335 NM_032559 CCDS32685 Q8N4N8 11416179 MGI:1920720 RGD:1359248 KIF2B 615142 +HGNC:6393 KIF2C kinesin family member 2C protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "MCAK|CT139" KNSL6 kinesin-like 6 (mitotic centromere-associated kinesin) Kinesins 622 1999-09-07 2003-01-17 2003-01-13 2014-11-19 11004 ENSG00000142945 OTTHUMG00000008416 uc001cmg.5 U63743 NM_006845 "CCDS512|CCDS72774" Q99661 9434124 MGI:1921054 RGD:620239 KIF2C 604538 +HGNC:6319 KIF3A kinesin family member 3A protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "FLA10|KLP-20" kinesin family protein 3A Kinesins 622 1999-09-07 2016-10-05 11127 ENSG00000131437 OTTHUMG00000059725 uc003kxo.4 AF041853 NM_007054 "CCDS34235|CCDS75295|CCDS75296" Q9Y496 1054846 MGI:107689 RGD:621536 KIF3A 604683 +HGNC:6320 KIF3B kinesin family member 3B protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "KIAA0359|FLA8|KLP-11" Kinesins 622 1999-07-06 2015-09-01 9371 ENSG00000101350 OTTHUMG00000032214 uc002wxq.4 AB002357 NM_004798 CCDS13200 O15066 9205841 MGI:107688 RGD:1306815 KIF3B 603754 +HGNC:6321 KIF3C kinesin family member 3C protein-coding gene gene with protein product Approved 2p23.3 02p23.3 Kinesins 622 1997-11-03 2016-10-05 3797 ENSG00000084731 OTTHUMG00000094797 uc002rgu.3 NM_002254 CCDS1719 O14782 9480755 MGI:107979 RGD:621538 KIF3C 602845 +HGNC:13339 KIF4A kinesin family member 4A protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "KIF4-G1|KIF4|HSA271784|FLJ12530|FLJ12655|FLJ14204|FLJ20631|MRX100" chromokinesin "X-linked mental retardation|Kinesins" "103|622" 2000-09-19 2014-11-28 24137 ENSG00000090889 OTTHUMG00000021775 uc004dyg.4 AF179308 NM_012310 CCDS14401 O95239 10773663 MGI:108389 RGD:620526 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KIF4A KIF4A 300521 +HGNC:6322 KIF4B kinesin family member 4B protein-coding gene gene with protein product Approved 5q33.2 05q33.2 Kinesins 622 2000-08-31 2015-09-01 285643 ENSG00000226650 OTTHUMG00000164143 uc010jih.2 AF241316 NM_001099293 CCDS47324 Q2VIQ3 KIF4B 609184 +HGNC:13340 KIF4CP kinesin family member 4C, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 KIF4P1 Kinesins 622 2006-02-10 2015-03-12 2015-03-12 347363 ENSG00000225025 OTTHUMG00000021899 NG_016703 10978527 PGOHUM00000241868 +HGNC:6323 KIF5A kinesin family member 5A protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "D12S1889|NKHC|MY050" SPG10 spastic paraplegia 10 (autosomal dominant) Kinesins 622 1998-08-24 2004-02-13 2015-08-28 3798 ENSG00000155980 OTTHUMG00000170143 uc001sor.2 U06698 NM_004984 CCDS8945 Q12840 "9858832|10441583|16489470" MGI:109564 RGD:1303035 KIF5A 602821 122851 +HGNC:6324 KIF5B kinesin family member 5B protein-coding gene gene with protein product Approved 10p11.22 10p11.22 KNS KNS1 Kinesins 622 1998-08-24 2015-08-28 3799 ENSG00000170759 OTTHUMG00000017913 uc001iwe.5 X65873 NM_004521 CCDS7171 P33176 1607388 MGI:1098268 RGD:621559 KIF5B 602809 +HGNC:6325 KIF5C kinesin family member 5C protein-coding gene gene with protein product Approved 2q23.1-q23.2 02q23.1-q23.2 Kinesins 622 1998-08-24 2016-10-11 3800 ENSG00000168280 OTTHUMG00000153779 uc010zbu.3 AB011103 NM_004522 CCDS74586 O60282 7514426 MGI:1098269 RGD:1308539 KIF5C 604593 +HGNC:21202 KIF6 kinesin family member 6 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "dJ1043E3.1|MGC33317|dJ137F1.4|dJ188D3.1|DKFZp451I2418" C6orf102 chromosome 6 open reading frame 102 Kinesins 622 2003-11-26 2014-11-19 221458 ENSG00000164627 OTTHUMG00000014648 uc003oot.3 AL832634 NM_145027 "CCDS4844|CCDS75449" Q6ZMV9 MGI:1098238 RGD:621070 KIF6 613919 +HGNC:30497 KIF7 kinesin family member 7 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 JBTS12 Kinesins 622 2005-02-07 2014-11-19 374654 ENSG00000166813 OTTHUMG00000157177 uc002bof.3 AY358384 NM_198525 CCDS32325 Q2M1P5 "11416179|15547730" MGI:1098239 RGD:1310310 KIF7 611254 268061 +HGNC:16666 KIF9 kinesin family member 9 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 MGC104186 Kinesins 622 2001-09-24 2014-11-19 64147 ENSG00000088727 OTTHUMG00000133512 uc062jch.1 AF311212 XM_005265388 "CCDS2751|CCDS2752" Q9HAQ2 11483511 MGI:1098237 RGD:1565187 KIF9 607910 +HGNC:26822 KIF9-AS1 KIF9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 FLJ39534 2012-11-19 2014-11-19 285352 ENSG00000227398 OTTHUMG00000156533 uc003cqw.3 NR_033373 +HGNC:6388 KIF11 kinesin family member 11 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "Eg5|HKSP|TRIP5" KNSL1 kinesin-like 1 Kinesins 622 1992-07-09 2003-01-10 2003-01-09 2016-10-05 3832 ENSG00000138160 OTTHUMG00000018761 uc001kic.4 X85137 NM_004523 CCDS7422 P52732 "1505978|8548803" MGI:1098231 RGD:621258 KIF11 148760 292401 objectId:2788 +HGNC:21495 KIF12 kinesin family member 12 protein-coding gene gene with protein product Approved 9q32 09q32 Kinesins 622 2003-06-18 2016-10-05 113220 ENSG00000136883 OTTHUMG00000020533 uc004bif.3 BC010626 NM_138424 CCDS6801 Q96FN5 MGI:1098232 RGD:1308487 KIF12 611278 +HGNC:14566 KIF13A kinesin family member 13A protein-coding gene gene with protein product Approved 6p22.3 06p22.3 bA500C11.2 Kinesins 622 2001-02-08 2016-10-05 63971 ENSG00000137177 OTTHUMG00000014313 uc003ncg.5 AJ291578 XM_017011188 "CCDS47380|CCDS47381|CCDS54967|CCDS54968|CCDS58998" Q9H1H9 11106728 MGI:1098264 RGD:1307825 KIF13A 605433 +HGNC:14405 KIF13B kinesin family member 13B protein-coding gene gene with protein product Approved 8p21 08p21 "GAKIN|KIAA0639" Kinesins 622 2001-02-28 2014-11-18 23303 ENSG00000197892 OTTHUMG00000164032 uc003xhh.5 AB014539 XM_011544460 CCDS55217 Q9NQT8 "9734811|10859302|16864656" MGI:1098265 RGD:1303307 KIF13B 607350 +HGNC:19181 KIF14 kinesin family member 14 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 KIAA0042 Kinesins 622 2002-09-12 2014-11-18 9928 ENSG00000118193 OTTHUMG00000035723 uc010ppk.2 D26361 NM_014875 CCDS30963 Q15058 7584044 MGI:1098226 RGD:1310650 KIF14 611279 444781 +HGNC:17273 KIF15 kinesin family member 15 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "HKLP2|NY-BR-62" KNSL7 kinesin-like 7 Kinesins 622 2001-12-11 2005-03-17 2005-03-15 2014-11-19 56992 ENSG00000163808 OTTHUMG00000156307 uc003cnx.5 AB035898 XM_017006884 CCDS33744 Q9NS87 10878014 MGI:1098258 RGD:727790 KIF15 +HGNC:15869 KIF16B kinesin family member 16B protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "FLJ20135|dJ971B4.1|SNX23" C20orf23 chromosome 20 open reading frame 23 Kinesins 622 2001-06-21 2008-03-03 2008-03-03 2016-10-05 55614 ENSG00000089177 OTTHUMG00000031927 uc002wpg.3 AK000142 NM_017683 "CCDS13122|CCDS56178|CCDS82598" Q96L93 "16084724|16782399" MGI:1098240 RGD:1310146 KIF16B +HGNC:19167 KIF17 kinesin family member 17 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "KIAA1405|KIF3X|KIF17B|OSM-3|KLP-2" "kinesin-like protein KIF17|KIF3-related motor protein|KIF17 variant protein" Kinesins 622 2002-08-29 2016-10-05 57576 ENSG00000117245 OTTHUMG00000002863 uc001bdr.6 AB037826 NM_020816 "CCDS213|CCDS44079|CCDS72722" Q9P2E2 10846156 MGI:1098229 RGD:1562511 KIF17 605037 +HGNC:29441 KIF18A kinesin family member 18A protein-coding gene gene with protein product Approved 11p14.1 11p14.1 "DKFZP434G2226|PPP1R99" protein phosphatase 1, regulatory subunit 99 "Kinesins|Protein phosphatase 1 regulatory subunits" "622|694" 2004-08-20 2014-11-18 81930 ENSG00000121621 OTTHUMG00000166195 uc001msc.3 AL136819 NM_031217 CCDS7867 Q8NI77 11230166 MGI:2446977 RGD:1561740 KIF18A 611271 +HGNC:27102 KIF18B kinesin family member 18B protein-coding gene gene with protein product Approved 17q21.31 17q21.31 Kinesins 622 2008-03-03 2016-04-25 146909 ENSG00000186185 OTTHUMG00000179867 uc010wjh.4 NM_001080443 "CCDS45709|CCDS58555" Q86Y91 16084724 MGI:2446979 RGD:1310360 KIF18B 614570 +HGNC:51808 KIF18BP1 kinesin family member 18B pseudogene 1 pseudogene pseudogene Approved 16p11.1 16p11.1 2015-06-09 2015-06-09 642683 ENSG00000260746 OTTHUMG00000176018 NG_009010 PGOHUM00000293588 +HGNC:26735 KIF19 kinesin family member 19 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "FLJ37300|KIF19A" Kinesins 622 2006-01-16 2016-10-05 124602 ENSG00000196169 OTTHUMG00000150694 uc002jkm.4 AK094619 NM_153209 CCDS32718 Q2TAC6 11416179 MGI:2447024 RGD:1559936 KIF19 +HGNC:9787 KIF20A kinesin family member 20A protein-coding gene gene with protein product Approved 5q31.2 05q31.2 RAB6KIFL RAB6 interacting, kinesin-like (rabkinesin6) Kinesins 622 1999-05-17 2003-01-17 2003-01-13 2016-10-05 10112 ENSG00000112984 OTTHUMG00000129195 uc003lcj.4 AF070672 NM_005733 CCDS4199 O95235 "11416179|10806357" MGI:1201682 RGD:1307695 KIF20A 605664 +HGNC:7212 KIF20B kinesin family member 20B protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "MPP1|KRMP1|CT90" cancer/testis antigen 90 MPHOSPH1 M-phase phosphoprotein 1 Kinesins 622 2000-05-12 2008-07-31 2008-07-31 2014-11-18 9585 ENSG00000138182 OTTHUMG00000018725 uc001kgr.3 L16782 NM_016195 "CCDS7407|CCDS60590" Q96Q89 "8885239|8290587|11470801" MGI:2444576 RGD:1308497 KIF20B 605498 +HGNC:19349 KIF21A kinesin family member 21A protein-coding gene gene with protein product Approved 12q12 12q12 FLJ20052 FEOM1 fibrosis of the extraocular muscles, congenital, 1 "WD repeat domain containing|Kinesins" "362|622" 2002-10-08 2014-11-19 55605 ENSG00000139116 OTTHUMG00000169335 uc001rly.4 AK000059 NM_017641 "CCDS31773|CCDS53774|CCDS53775|CCDS53776" Q7Z4S6 10225949 MGI:109188 RGD:1305126 KIF21A 608283 122847 +HGNC:29442 KIF21B kinesin family member 21B protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "DKFZP434J212|KIAA0449" "WD repeat domain containing|Kinesins" "362|622" 2004-11-10 2014-11-19 23046 ENSG00000116852 OTTHUMG00000035787 uc001gvs.3 BC031927 XM_371332 "CCDS30965|CCDS58054|CCDS58055|CCDS58056" O75037 9455484 MGI:109234 RGD:1306206 KIF21B 608322 +HGNC:6391 KIF22 kinesin family member 22 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "Kid|OBP-1|OBP-2" KNSL4 kinesin-like 4 Kinesins 622 1998-05-21 2003-01-10 2003-01-09 2014-11-18 3835 ENSG00000079616 OTTHUMG00000097771 uc002dts.5 D38751 XR_243280 "CCDS10653|CCDS58444" Q14807 "8599929|11416179" MGI:109233 RGD:1311886 KIF22 603213 286634 +HGNC:6392 KIF23 kinesin family member 23 protein-coding gene gene with protein product Approved 15q23 15q23 "MKLP1|MKLP-1" KNSL5 kinesin-like 5 (mitotic kinesin-like protein 1) Kinesins 622 1999-09-07 2003-01-17 2003-01-13 2014-11-18 9493 ENSG00000137807 OTTHUMG00000172062 uc002asb.5 X67155 XM_011522239 "CCDS32278|CCDS32279" Q02241 1406973 MGI:1919069 RGD:1308596 KIF23 605064 357756 +HGNC:19916 KIF24 kinesin family member 24 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "bA571F15.4|FLJ10933|FLJ43884" C9orf48 chromosome 9 open reading frame 48 "Kinesins|Sterile alpha motif domain containing" "622|760" 2002-12-03 2014-11-18 347240 ENSG00000186638 OTTHUMG00000019810 uc003zua.5 AK001795 XM_011517863 CCDS6551 Q5T7B8 12477932 MGI:1918345 RGD:1307723 KIF24 613747 +HGNC:6390 KIF25 kinesin family member 25 protein-coding gene gene with protein product Approved 6q27 06q27 KNSL3 kinesin-like 3 Kinesins 622 1998-05-11 2003-01-10 2003-01-09 2014-11-19 3834 ENSG00000125337 OTTHUMG00000016035 uc063syf.1 AB012722 XM_011535802 "CCDS5305|CCDS43530" Q9UIL4 9925910 KIF25 603815 +HGNC:20953 KIF25-AS1 KIF25 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q27 06q27 HGC6.1.1 "C6orf54|NCRNA00300" "chromosome 6 open reading frame 54|non-protein coding RNA 300|KIF25 antisense RNA 1 (non-protein coding)" 2003-04-24 2011-08-10 2012-08-15 2014-11-19 100505879 ENSG00000229921 OTTHUMG00000016036 uc003qwi.5 AB016899 NR_103750 Q9Y6Z4 10382971 +HGNC:20226 KIF26A kinesin family member 26A protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "KIAA1236|DKFZP434N178" Kinesins 622 2003-01-15 2014-11-18 26153 ENSG00000066735 OTTHUMG00000154986 uc001yos.5 AB033062 XM_011536641 CCDS45171 Q9ULI4 "10574462|11416179" MGI:2447072 RGD:1307957 KIF26A 613231 +HGNC:25484 KIF26B kinesin family member 26B protein-coding gene gene with protein product Approved 1q44 01q44 FLJ10157 Kinesins 622 2006-07-04 2014-11-19 55083 ENSG00000162849 OTTHUMG00000040079 uc001ibf.1 AK001019 XM_371354 CCDS44342 Q2KJY2 MGI:2447076 RGD:1560022 KIF26B 614026 +HGNC:18632 KIF27 kinesin family member 27 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 DKFZp434D0917 Kinesins 622 2003-04-16 2015-08-25 55582 ENSG00000165115 OTTHUMG00000020109 uc004ana.6 AY237536 NM_017576 "CCDS6665|CCDS65071|CCDS65072" Q86VH2 MGI:1922300 RGD:621071 KIF27 611253 +HGNC:49205 KIF28P kinesin family member 28, pseudogene pseudogene pseudogene Approved 1q44 01q44 KLP-6 Kinesins 622 2013-10-08 2016-09-27 100130097 ENSG00000223519 OTTHUMG00000153447 NG_050633 B7ZC32 16084724 MGI:2686151 RGD:1559696 +HGNC:17060 KIFAP3 kinesin associated protein 3 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "SMAP|KAP3|FLA3|KAP-1" Smg GDS kinesin-associated protein 3 2001-11-21 2016-01-21 2016-01-21 22920 ENSG00000075945 OTTHUMG00000035947 uc001ggv.4 U59919 NM_014970 "CCDS1288|CCDS55659|CCDS55660|CCDS55661" Q92845 8900189 MGI:107566 RGD:1305191 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ KIFAP3 601836 +HGNC:6389 KIFC1 kinesin family member C1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 HSET KNSL2 kinesin-like 2 Kinesins 622 1993-06-25 2003-01-10 2003-01-09 2014-11-19 3833 ENSG00000237649 OTTHUMG00000031209 uc063yhh.1 D14678 NM_002263 CCDS34430 Q9BW19 8276466 MGI:2137414 RGD:1359118 KIFC1 603763 +HGNC:29530 KIFC2 kinesin family member C2 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 Kinesins 622 2004-01-26 2015-08-25 90990 ENSG00000167702 OTTHUMG00000165133 uc003zcz.4 AY007121 NM_145754 CCDS6427 Q96AC6 9115737 MGI:109187 RGD:735021 KIFC2 615216 +HGNC:6326 KIFC3 kinesin family member C3 protein-coding gene gene with protein product Approved 16q21 16q21 Kinesins 622 1998-04-08 2016-10-05 3801 ENSG00000140859 OTTHUMG00000133455 uc002emp.4 BC001211 NM_005550 "CCDS10789|CCDS45493|CCDS45494|CCDS81987|CCDS81988|CCDS81989" Q9BVG8 9782090 MGI:109202 RGD:1307693 KIFC3 604535 +HGNC:6327 KIN Kin17 DNA and RNA binding protein protein-coding gene gene with protein product Approved 10p14 10p14 "KIN17|Rts2" "antigenic determinant of recA protein (mouse) homolog|KIN, antigenic determinant of recA protein homolog (mouse)" 1999-10-14 2014-07-15 2015-02-02 22944 ENSG00000151657 OTTHUMG00000017634 uc001ijt.4 AJ005273 NM_012311 CCDS7080 O60870 "1923796|24140279" MGI:96676 RGD:1596107 KIN 601720 +HGNC:6329 KIR2DL1 killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "cl-42|nkat1|47.11|p58.1|CD158A" killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-10-05 3802 ENSG00000125498 OTTHUMG00000065885 uc002qhb.2 L41267 XM_017026782 CCDS12904 P43626 "7749980|7716543" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ KIR2DL1 604936 CD158A +HGNC:6330 KIR2DL2 killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 2 protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus "cl-43|nkat6|CD158B1|CD158k" killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-01-20 3803 OTTHUMG00000151579 uc061eyy.1 "L76669|GL949748|GL949753" NM_014219 P43627 "7749980|8662091" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ 604937 CD158k +HGNC:6331 KIR2DL3 killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 3 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "cl-6|nkat2|nkat2a|nkat2b|p58|CD158B2" killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-01-20 3804 ENSG00000243772 OTTHUMG00000065887 uc002qgx.4 L41268 NM_015868 CCDS33107 P43628 "7749980|8662091" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ KIR2DL3 604938 CD158B2 +HGNC:6332 KIR2DL4 killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "103AS|15.212|CD158D" killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-01-20 3805 ENSG00000189013 OTTHUMG00000065880 uc002qhg.5 X97229 NM_001080772 "CCDS42619|CCDS42620" Q99706 8946682 IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ KIR2DL4 604945 CD158D +HGNC:16345 KIR2DL5A killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 5A protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus "KIR2DL5.1|KIR2DL5|CD158F" killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5A "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 2005-06-03 2016-01-20 2016-01-20 57292 OTTHUMG00000151665 uc032ivi.2 "AF217485|GL949747" NM_020535 Q8N109 "11086080|12185535" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ 605305 I43.951 CD158F +HGNC:16346 KIR2DL5B killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 5B protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus "KIR2DL5.2|KIR2DL5|KIR2DL5.3|KIR2DL5.4" killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5B Killer cell immunoglobulin like receptors 620 2005-06-06 2016-01-20 2016-01-20 553128 uc061fdp.1 "AF217486|KI270886|KI270930|KI270914|KI270882" NM_001018081 Q8NHK3 "11086080|12185535" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ 615727 +HGNC:16344 KIR2DP1 killer cell immunoglobulin like receptor, two Ig domains pseudogene 1 pseudogene pseudogene Approved 19q13.42 19q13.42 "KIRZ|KIRY|KIR15|KIR2DL6" killer cell immunoglobulin-like receptor, two domains, pseudogene 1 Killer cell immunoglobulin like receptors 620 2005-06-06 2016-01-20 2016-10-05 554300 ENSG00000242473 OTTHUMG00000065882 uc061efo.1 AF204908 NG_005994 IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ +HGNC:6333 KIR2DS1 killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 1 protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus "EB6ActI|EB6ActII|CD158H" killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 1 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-01-20 3806 OTTHUMG00000151075 uc061dvn.1 "X89892|GL949751|GL949747|GL949749" NM_014512 Q14954 8627176 IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ 604952 CD158H +HGNC:6334 KIR2DS2 killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 2 protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus "cl-49|nkat5|183ActI|CD158J" killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-01-20 100132285 OTTHUMG00000151577 uc061euo.1 "L76667|GL949748|GL949753" NM_012312 P43631 "7749980|7716543" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ 604953 CD158J +HGNC:6335 KIR2DS3 killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 3 protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus nkat7 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 3 Killer cell immunoglobulin like receptors 620 1997-11-14 2016-01-20 2016-01-20 3808 uc061evi.1 "L76670|KI270886|KI270882" NM_012313 Q14952 8662091 IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ 604954 +HGNC:6336 KIR2DS4 killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 4 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "cl-39|KKA3|nkat8|CD158i" killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-01-20 3809 ENSG00000221957 OTTHUMG00000065932 uc061ctl.1 L76671 NM_012314 P43632 "8765026|7749980" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ KIR2DS4 604955 CD158i +HGNC:6337 KIR2DS5 killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 5 protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus "nkat9|CD158G" killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 5 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-01-20 3810 uc061fdr.1 "L76672|GL949747" NM_014513 Q14953 8662091 IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ 604956 CD158G +HGNC:6338 KIR3DL1 killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "cl-2|NKB1|cl-11|nkat3|NKB1B|AMB11|CD158e1/2|CD158E1|CD158e2" KIR killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1995-12-20 2016-01-20 2016-10-05 3811 ENSG00000167633 OTTHUMG00000065933 uc002qhk.5 L41269 NM_013289 CCDS42621 P43629 "7716543|7749980" "MGI:2652397|MGI:3612791" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ KIR3DL1 604946 CD158e1/2 +HGNC:6339 KIR3DL2 killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 2 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "cl-5|nkat4|nkat4a|nkat4b|CD158K" killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 1997-11-14 2016-01-20 2016-10-05 3812 ENSG00000240403 OTTHUMG00000065935 uc002qho.5 L41270 XM_011526940 "CCDS12906|CCDS58677" P43630 "7716543|8662091" "MGI:2652397|MGI:3612791" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ KIR3DL2 604947 CD158k +HGNC:16312 KIR3DL3 killer cell immunoglobulin like receptor, three Ig domains and long cytoplasmic tail 3 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "KIRC1|KIR3DL7|KIR44|CD158z" killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 2004-01-29 2016-01-20 2016-10-05 115653 ENSG00000242019 OTTHUMG00000065884 uc032ieo.2 AF352324 NM_153443 CCDS12903 Q8N743 11513144 "MGI:2652397|MGI:3612791" RGD:727836 IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ KIR3DL3 610095 CD158z +HGNC:16343 KIR3DP1 killer cell immunoglobulin like receptor, three Ig domains pseudogene 1 pseudogene pseudogene Approved 19q13.42 19q13.42 "KIRX|KIR48|KIR2DS6|KIR3DS2P|CD158C" killer cell immunoglobulin-like receptor, three domains, pseudogene 1 "CD molecules|Killer cell immunoglobulin like receptors" "471|620" 2005-06-06 2016-01-20 2016-01-20 548594 ENSG00000264257 OTTHUMG00000178663 uc032lyq.2 AF204919 NM_001015070 A8MWS1 "15580659|15194195" IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ 610604 PGOHUM00000263016 CD158C +HGNC:6340 KIR3DS1 killer cell immunoglobulin like receptor, three Ig domains and short cytoplasmic tail 1 protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus nkat10 killer cell immunoglobulin-like receptor, three domains, short cytoplasmic tail, 1 Killer cell immunoglobulin like receptors 620 1997-11-14 2016-01-20 2016-01-20 3813 OTTHUMG00000151668 uc061evc.1 "L76661|GL949747" NM_001083539 Q14943 8662091 IPD-KIR Database|http://www.ebi.ac.uk/ipd/kir/ +HGNC:25043 KIR3DX1 killer cell immunoglobulin like receptor, three Ig domains X1 other unknown Approved 19q13.42 19q13.42 FLJ00060 LENG12 "leukocyte receptor cluster (LRC) member 12|killer cell immunoglobulin-like receptor, three domains, X1" Killer cell immunoglobulin like receptors 620 2006-03-24 2006-09-12 2016-01-20 2016-01-20 90011 ENSG00000104970 OTTHUMG00000065696 uc010erm.4 BC033195 NR_026716 Q9H7L2 11441184 KIR3DX1 +HGNC:15734 KIRREL kin of IRRE like (Drosophila) protein-coding gene gene with protein product Approved 1q23.1 01q23.1 NEPH1 nephrin-like protein 1 "C2-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "592|593|594" 2002-01-22 2015-08-28 55243 ENSG00000183853 OTTHUMG00000022438 uc001frn.6 AK001707 NM_018240 "CCDS1172|CCDS72952" Q96J84 12424224 MGI:1891396 RGD:727883 KIRREL 607428 +HGNC:41412 KIRREL-IT1 KIRREL intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q23.1 01q23.1 KIRREL intronic transcript 1 (non-protein coding) 2011-05-23 2015-02-25 2015-02-25 100505785 ENSG00000226520 OTTHUMG00000035615 uc057mff.1 +HGNC:18816 KIRREL2 kin of IRRE like 2 (Drosophila) protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "NLG1|NEPH3|FILTRIN|DKFZp564A1164|MGC15718" "C2-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "592|593|594" 2002-07-01 2015-09-01 84063 ENSG00000126259 OTTHUMG00000180691 uc002ocb.5 AL136654 NM_032123 "CCDS12479|CCDS12480|CCDS12481" Q6UWL6 "12837264|12504092" MGI:2442334 RGD:1308456 KIRREL2 607762 +HGNC:23204 KIRREL3 kin of IRRE like 3 (Drosophila) protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "NEPH2|KIAA1867|KIRRE" "C2-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "592|593|594" 2003-10-09 2016-10-05 84623 ENSG00000149571 OTTHUMG00000165831 uc001qea.4 AB058770 NM_032531 "CCDS53723|CCDS55796|CCDS73413" Q8IZU9 "12424224|11347906" MGI:1914953 RGD:1311382 KIRREL3 607761 199900 +HGNC:42655 KIRREL3-AS1 KIRREL3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q24.2 11q24.2 KIRREL3 antisense RNA 1 (non-protein coding) 2011-08-11 2012-08-15 2014-11-19 100874250 ENSG00000257271 OTTHUMG00000169624 uc058izx.1 +HGNC:42656 KIRREL3-AS2 KIRREL3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 11q24.2 11q24.2 KIRREL3 antisense RNA 2 (non-protein coding) 2011-08-11 2012-08-15 2014-11-19 100874251 ENSG00000254960 OTTHUMG00000165803 uc001qee.3 NR_046986 +HGNC:26855 KIRREL3-AS3 KIRREL3 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 11q24.2 11q24.2 FLJ40224 "PRR10|NCRNA00288" "proline rich 10|non-protein coding RNA 288|KIRREL3 antisense RNA 3 (non-protein coding)" 2005-10-03 2011-08-11 2012-08-15 2012-10-12 283165 ENSG00000218109 OTTHUMG00000165805 uc001qef.1 AK097543 NR_040078 Q8N7Y1 +HGNC:6341 KISS1 KiSS-1 metastasis-suppressor protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "prepro-kisspeptin|kisspeptin" Endogenous ligands 542 1998-05-18 2016-10-05 3814 ENSG00000170498 OTTHUMG00000036060 uc001har.4 U43527 NM_002256 CCDS41454 Q15726 "9192814|9806840" MGI:2663985 RGD:727850 KISS1 603286 292693 +HGNC:4510 KISS1R KISS1 receptor protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "HOT7T175|AXOR12" GPR54 G protein-coupled receptor 54 Peptide receptors 220 1999-03-12 2006-02-15 2006-02-15 2014-11-19 84634 ENSG00000116014 OTTHUMG00000181900 uc002lqk.4 AB051065 NM_032551 CCDS12049 Q969F8 10100623 MGI:2148793 RGD:70930 KISS1R 604161 122857 objectId:266 +HGNC:6342 KIT KIT proto-oncogene receptor tyrosine kinase protein-coding gene gene with protein product Approved 4q12 04q12 "CD117|SCFR|C-Kit" PBT "piebald trait|v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog" "Receptor Tyrosine Kinases|CD molecules|Immunoglobulin like domain containing" "321|471|594" 1986-01-01 2016-01-15 2016-10-12 3815 ENSG00000157404 OTTHUMG00000128713 uc010igr.4 S67773 NM_000222 "CCDS3496|CCDS47058" P10721 9027509 MGI:96677 RGD:620568 LRG_307|http://www.lrg-sequence.org/LRG/LRG_307 KIT 164920 122862 objectId:1805 CD117 +HGNC:6343 KITLG KIT ligand protein-coding gene gene with protein product Approved 12q21.32 12q21.32 "SCF|SF|Kitl|KL-1|FPH2" "mast cell growth factor|stem cell factor|steel factor|familial progressive hyperpigmentation 2" MGF 1991-06-04 2016-10-05 4254 ENSG00000049130 OTTHUMG00000169888 uc001tav.4 M59964 NM_003994 "CCDS31867|CCDS31868" P21583 "2208279|1707188|19375057" MGI:96974 RGD:3086 KITLG 184745 201509 +HGNC:15865 KIZ kizuna centrosomal protein protein-coding gene gene with protein product Approved 20p11.23 20p11.23 HT013 "NCRNA00153|C20orf19|PLK1S1" "non-protein coding RNA 153|chromosome 20 open reading frame 19|polo-like kinase 1 substrate 1" 2001-06-21 2014-02-17 2014-02-17 2014-11-18 55857 ENSG00000088970 OTTHUMG00000032020 AF220187 NM_018474 "CCDS74705|CCDS74706|CCDS74707|CCDS74708" Q2M2Z5 16980960 MGI:2684960 RGD:1307071 615757 400687 +HGNC:51231 KIZ-AS1 KIZ antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p11.23 20p11.23 2014-08-08 2014-08-08 101929591 ENSG00000232712 OTTHUMG00000032018 BC034426 NR_109956 +HGNC:6344 KL klotho protein-coding gene gene with protein product Approved 13q13.1 13q13.1 1999-03-24 2016-10-05 9365 ENSG00000133116 OTTHUMG00000017408 uc001uus.3 AB005142 XM_006719895 CCDS9347 Q9UEF7 9464267 MGI:1101771 RGD:620396 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=KL KL 604824 179419 +HGNC:15527 KLB klotho beta protein-coding gene gene with protein product Approved 4p14 04p14 2005-10-10 2014-11-19 152831 ENSG00000134962 OTTHUMG00000128577 uc003gua.4 AB079373 NM_175737 CCDS3451 Q86Z14 MGI:1932466 RGD:1308227 KLB 611135 +HGNC:6387 KLC1 kinesin light chain 1 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "KNS2A|KLC|hKLC1S|hKLC1N|hKLC1P|hKLC1G|hKLC1R|hKLC1J|hKLC1B" KNS2 "kinesin 2 60/70kDa|kinesin 2" Tetratricopeptide repeat domain containing 769 1994-07-07 2007-03-09 2007-03-09 2016-10-05 3831 ENSG00000126214 OTTHUMG00000169227 uc059fsm.1 AF267530 NM_005552 "CCDS32165|CCDS41996|CCDS45168" Q07866 "8274221|11106729" MGI:107978 RGD:621411 KLC1 600025 +HGNC:20716 KLC2 kinesin light chain 2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 FLJ12387 Tetratricopeptide repeat domain containing 769 2005-09-13 2016-10-05 64837 ENSG00000174996 OTTHUMG00000133757 uc010rov.2 AK022449 NM_022822 "CCDS8130|CCDS44653" Q9H0B6 9624122 MGI:107953 RGD:1307377 KLC2 611729 450291 +HGNC:20717 KLC3 kinesin light chain 3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "KLC2L|KNS2B|KLCt" Tetratricopeptide repeat domain containing 769 2005-09-13 2016-10-05 147700 ENSG00000104892 OTTHUMG00000143722 uc002pbf.2 AK092481 NM_145275 CCDS12660 Q6P597 MGI:1277971 RGD:621432 KLC3 601334 +HGNC:21624 KLC4 kinesin light chain 4 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 bA387M24.3 KNSL8 kinesin-like 8 Tetratricopeptide repeat domain containing 769 2003-06-27 2005-09-13 2005-09-13 2014-11-19 89953 ENSG00000137171 OTTHUMG00000014720 uc003otw.3 AK055293 NM_138343 "CCDS4882|CCDS4883|CCDS47429|CCDS75459" Q9NSK0 MGI:1922014 RGD:1306555 KLC4 +HGNC:6345 KLF1 Kruppel like factor 1 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 EKLF erythroid Kruppel-like factor Kruppel-like factor 1 (erythroid) "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 1999-12-14 2016-06-03 2016-10-12 10661 ENSG00000105610 OTTHUMG00000180536 uc002mvo.4 U37106 NM_006563 CCDS12285 Q13351 "8924208|9119377" MGI:1342771 RGD:1309398 LRG_825|http://www.lrg-sequence.org/LRG/LRG_825 KLF1 600599 240663 +HGNC:6347 KLF2 Kruppel like factor 2 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 LKLF lung Kruppel-like factor Kruppel-like factor 2 (lung) "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 1999-12-14 2016-06-03 2016-06-03 10365 ENSG00000127528 OTTHUMG00000182330 uc002ndw.4 AF123344 NM_016270 CCDS12343 Q9Y5W3 "10217429|10458913" MGI:1342772 RGD:1359220 KLF2 602016 +HGNC:49280 KLF2P1 Kruppel like factor 2 pseudogene 1 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-10-15 2016-06-03 2016-06-03 106480253 ENSG00000231240 OTTHUMG00000153624 NG_043904 PGOHUM00000240908 +HGNC:49281 KLF2P2 Kruppel like factor 2 pseudogene 2 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-10-15 2016-06-03 2016-06-03 106480678 ENSG00000230646 OTTHUMG00000153926 NG_045031 PGOHUM00000240932 +HGNC:49282 KLF2P3 Kruppel like factor 2 pseudogene 3 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-10-15 2016-06-03 2016-06-03 106481672 ENSG00000223349 OTTHUMG00000154048 NG_042968 PGOHUM00000240305 +HGNC:49283 KLF2P4 Kruppel like factor 2 pseudogene 4 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-10-15 2016-06-03 2016-06-03 100533668 ENSG00000236516 OTTHUMG00000153557 NG_028774 PGOHUM00000240310 +HGNC:16516 KLF3 Kruppel like factor 3 protein-coding gene gene with protein product Approved 4p14 04p14 BKLF basic Kruppel-like factor Kruppel-like factor 3 (basic) "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2001-09-13 2016-06-03 2016-06-03 51274 ENSG00000109787 OTTHUMG00000097821 uc003gth.5 AF285837 XM_017008279 CCDS3444 P57682 18391014 MGI:1342773 RGD:1593290 KLF3 609392 +HGNC:25796 KLF3-AS1 KLF3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4p14 04p14 FLJ13197 2014-03-20 2014-03-20 79667 ENSG00000231160 OTTHUMG00000160386 NR_026804 +HGNC:41518 KLF3P1 Kruppel like factor 3 pseudogene 1 pseudogene pseudogene Approved 5q35.1 05q35.1 Kruppel-like factor 3 (basic) pseudogene 1 2011-05-03 2016-06-03 2016-06-03 651815 ENSG00000253218 OTTHUMG00000163278 NG_006658 PGOHUM00000235453 +HGNC:41519 KLF3P2 Kruppel like factor 3 pseudogene 2 pseudogene pseudogene Approved 3q25.31 03q25.31 Kruppel-like factor 3 (basic) pseudogene 2 2011-05-03 2016-06-03 2016-06-03 100124394 ENSG00000241879 OTTHUMG00000158649 NG_006657 PGOHUM00000238242 +HGNC:6348 KLF4 Kruppel like factor 4 protein-coding gene gene with protein product Approved 9q31.2 09q31.2 "EZF|GKLF" gut Kruppel-like factor Kruppel-like factor 4 (gut) "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 1999-12-14 2016-06-03 2016-10-05 9314 ENSG00000136826 OTTHUMG00000020449 uc004bdg.4 AF022184 NM_004235 CCDS6770 O43474 "9422764|16372018" MGI:1342287 RGD:621445 KLF4 602253 +HGNC:49738 KLF4P1 Kruppel like factor 4 pseudogene 1 pseudogene pseudogene Approved 9p24.1 09p24.1 Kruppel-like factor 4 (gut) pseudogene 1 2014-02-13 2016-06-03 2016-06-03 100420113 ENSG00000233186 OTTHUMG00000019473 NG_023778 PGOHUM00000260450 +HGNC:6349 KLF5 Kruppel like factor 5 protein-coding gene gene with protein product Approved 13q22.1 13q22.1 "IKLF|CKLF" (intestinal Kruppel-like factor BTEB2 Kruppel-like factor 5 (intestinal) "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2000-03-06 2016-06-03 2016-10-05 688 ENSG00000102554 OTTHUMG00000017074 uc001vje.4 D14520 NM_001730 "CCDS9448|CCDS66562" Q13887 "8479902|9973612" MGI:1338056 RGD:621446 KLF5 602903 +HGNC:2235 KLF6 Kruppel like factor 6 protein-coding gene gene with protein product Approved 10p15.2 10p15.2 "CPBP|GBF|Zf9|PAC1" GC-rich binding factor "BCD1|ST12|COPEB" core promoter element binding protein "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 1997-10-16 2004-12-01 2016-06-03 2016-10-05 1316 ENSG00000067082 OTTHUMG00000017567 uc001iha.4 U51869 NM_001300 "CCDS7060|CCDS53490" Q99612 "9503030|9685731" MGI:1346318 RGD:62389 KLF6 602053 +HGNC:6350 KLF7 Kruppel like factor 7 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 UKLF ubiquitous Kruppel-like factor Kruppel-like factor 7 (ubiquitous) "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 1999-12-14 2016-06-03 2016-10-05 8609 ENSG00000118263 OTTHUMG00000132935 uc002vbz.3 AB015132 NM_003709 "CCDS2373|CCDS59438|CCDS59439|CCDS59440" O75840 9774444 MGI:1935151 RGD:1306029 KLF7 604865 +HGNC:41355 KLF7-IT1 KLF7 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q33.3 02q33.3 KLF7 intronic transcript 1 (non-protein coding) 2011-05-23 2015-02-25 2015-02-25 100874272 ENSG00000237892 OTTHUMG00000154726 uc061rum.1 +HGNC:17207 KLF7P1 kruppel like factor 7 pseudogene 1 pseudogene pseudogene Approved 3q26.2 03q26.2 KLF7P kruppel-like factor 7 pseudogene 2008-12-09 2010-02-24 2016-06-03 2016-06-03 100128036 ENSG00000240704 OTTHUMG00000158998 NG_009752 PGOHUM00000237860 +HGNC:6351 KLF8 Kruppel like factor 8 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "BKLF3|ZNF741|DXS741" "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2000-03-14 2016-06-03 2016-06-03 11279 ENSG00000102349 OTTHUMG00000021666 uc004dur.4 U28282 NM_007250 "CCDS14373|CCDS55428" O95600 MGI:2442430 RGD:1565831 KLF8 300286 +HGNC:41520 KLF8P1 Kruppel like factor 8 pseudogene 1 pseudogene pseudogene Approved 16q12.1 16q12.1 2011-05-03 2016-06-03 2016-06-03 100128777 ENSG00000260726 OTTHUMG00000174457 NG_011843 PGOHUM00000249125 +HGNC:1123 KLF9 Kruppel like factor 9 protein-coding gene gene with protein product Approved 9q21.12 09q21.12 BTEB1 basic transcription element binding protein 1 "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 1994-05-17 2004-12-01 2016-06-03 2016-10-05 687 ENSG00000119138 OTTHUMG00000019991 uc004aht.4 BC069431 NM_001206 CCDS6633 Q13886 1356762 MGI:1333856 RGD:70934 KLF9 602902 +HGNC:11810 KLF10 Kruppel like factor 10 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "EGRA|TIEG1" TIEG TGFB inducible early growth response "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 1997-08-28 2004-12-01 2016-06-03 2016-10-12 7071 ENSG00000155090 OTTHUMG00000164735 uc011lhk.3 U21847 NM_001032282 "CCDS6294|CCDS47905" Q13118 "8584037|9721211" MGI:1101353 RGD:621652 LRG_758|http://www.lrg-sequence.org/LRG/LRG_758 KLF10 601878 +HGNC:11811 KLF11 Kruppel like factor 11 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "Tieg3|MODY7" TIEG2 TGFB inducible early growth response 2 "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 1998-10-02 2004-12-01 2016-06-03 2016-10-05 8462 ENSG00000172059 OTTHUMG00000119004 uc002raf.1 AF028008 NM_003597 "CCDS1668|CCDS54333" O14901 "9748269|11087666" MGI:2653368 RGD:1306646 KLF11 603301 122868 +HGNC:6346 KLF12 Kruppel like factor 12 protein-coding gene gene with protein product Approved 13q22.1 13q22.1 "AP-2rep|HSPC122|AP2REP" "KLF12 zinc finger transcriptional repressor|AP-2rep transcription factor|AP-2 repressor" "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2000-05-25 2016-06-03 2016-10-05 11278 ENSG00000118922 OTTHUMG00000017078 uc058xlm.1 AJ243274 NM_007249 CCDS9449 Q9Y4X4 10704285 MGI:1333796 RGD:1309204 KLF12 607531 +HGNC:13672 KLF13 Kruppel like factor 13 protein-coding gene gene with protein product Approved 15q13.3 15q13.3 "RFLAT-1|BTEB3|NSLP1|FKLF-2" "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2000-09-28 2016-06-03 2016-06-03 51621 ENSG00000169926 OTTHUMG00000172224 uc001zfo.4 AF132599 NM_015995 CCDS10025 Q9Y2Y9 "10415854|10023774" MGI:1354948 RGD:1565099 KLF13 605328 +HGNC:23025 KLF14 Kruppel like factor 14 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 BTEB5 "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2003-08-19 2016-06-03 2016-10-12 136259 ENSG00000266265 OTTHUMG00000188298 uc033aho.2 AF490374 NM_138693 CCDS5825 Q8TD94 17480121 MGI:3577024 RGD:1306012 LRG_1039|http://www.lrg-sequence.org/LRG/LRG_1039 KLF14 609393 +HGNC:14536 KLF15 Kruppel like factor 15 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 KKLF kidney-enriched Kruppel-like factor "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2001-02-21 2016-06-03 2016-06-03 28999 ENSG00000163884 OTTHUMG00000162689 uc011bkk.2 AB029254 NM_014079 CCDS3036 Q9UIH9 10982849 MGI:1929988 RGD:70918 KLF15 606465 +HGNC:16857 KLF16 Kruppel like factor 16 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "NSLP2|BTEB4|DRRF" "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2001-11-27 2016-06-03 2016-06-03 83855 ENSG00000129911 OTTHUMG00000179994 uc002luc.4 AF327440 NM_031918 CCDS12075 Q9BXK1 11438660 MGI:2153049 RGD:1305966 KLF16 606139 +HGNC:18830 KLF17 Kruppel like factor 17 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "Zfp393|FLJ40160" ZNF393 zinc finger protein 393 "Zinc fingers C2H2-type|Kruppel like factors" "28|624" 2004-11-03 2006-02-17 2016-06-03 2016-06-03 128209 ENSG00000171872 OTTHUMG00000009664 uc001clp.4 BC049844 NM_173484 CCDS508 Q5JT82 16460907 MGI:2181068 RGD:1307711 KLF17 609602 +HGNC:41521 KLF17P1 Kruppel like factor 17 pseudogene 1 pseudogene pseudogene Approved 12q14.1 12q14.1 2011-05-03 2016-06-03 2016-06-03 100133321 ENSG00000258316 OTTHUMG00000170205 NG_028765 PGOHUM00000239489 +HGNC:49135 KLF17P2 Kruppel like factor 17 pseudogene 2 pseudogene pseudogene Approved 4p15.33 04p15.33 2013-09-16 2016-06-03 2016-06-03 106481669 ENSG00000251317 OTTHUMG00000160356 NG_045256 PGOHUM00000245855 +HGNC:51793 KLF18 Kruppel like factor 18 other unknown Approved 1p34.1 01p34.1 2015-05-29 2016-06-03 2016-07-18 105378952 ENSG00000283039 OTTHUMG00000007489 XM_011542546 24244731 RGD:1563227 +HGNC:19836 KLHDC1 kelch domain containing 1 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 MST025 2002-11-27 2014-11-19 122773 ENSG00000197776 OTTHUMG00000140295 uc001www.3 AF111806 NM_172193 CCDS9692 Q8N7A1 MGI:2672853 RGD:1308211 KLHDC1 611281 +HGNC:20231 KLHDC2 kelch domain containing 2 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 "HCLP-1|LCP" 2003-01-15 2014-11-18 23588 ENSG00000165516 OTTHUMG00000140288 uc001wwx.4 AK001771 XM_006720094 CCDS9693 Q9Y2U9 11384994 MGI:1916804 RGD:1306504 KLHDC2 611280 +HGNC:20704 KLHDC3 kelch domain containing 3 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "PEAS|hPeas|dJ20C7.3" 2003-06-02 2014-11-19 116138 ENSG00000124702 OTTHUMG00000014714 uc003otl.4 AB055925 NM_057161 CCDS4880 Q9BQ90 "12444059|12606021" MGI:2651568 RGD:1307105 KLHDC3 611248 +HGNC:25272 KLHDC4 kelch domain containing 4 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 DKFZp434G0522 2004-07-05 2016-10-05 54758 ENSG00000104731 OTTHUMG00000137657 uc002fki.4 AK001742 NM_017566 "CCDS10963|CCDS54050|CCDS54051" Q8TBB5 MGI:2384569 RGD:1561676 KLHDC4 +HGNC:26791 KLHDC7A kelch domain containing 7A protein-coding gene gene with protein product Approved 1p36.13 01p36.13 FLJ38753 2005-10-06 2014-11-19 127707 ENSG00000179023 OTTHUMG00000002431 uc001bax.4 AK096072 NM_152375 CCDS185 Q5VTJ3 MGI:2444612 RGD:1309439 KLHDC7A +HGNC:25145 KLHDC7B kelch domain containing 7B protein-coding gene gene with protein product Approved 22q13.33 22q13.33 MGC16635 2005-10-06 2005-12-13 2015-08-25 113730 ENSG00000130487 OTTHUMG00000150250 uc003bmi.3 BC009980 NM_138433 CCDS14097 Q96G42 MGI:3648212 RGD:1562257 KLHDC7B +HGNC:25573 KLHDC8A kelch domain containing 8A protein-coding gene gene with protein product Approved 1q32.1 01q32.1 FLJ10748 2005-12-05 2014-11-19 55220 ENSG00000162873 OTTHUMG00000037199 uc031prw.1 NM_018203 CCDS30985 Q8IYD2 MGI:2442630 RGD:1305132 KLHDC8A 614503 +HGNC:28557 KLHDC8B kelch domain containing 8B protein-coding gene gene with protein product Approved 3p21.31 03p21.31 MGC35097 2005-12-05 2014-11-18 200942 ENSG00000185909 OTTHUMG00000156814 uc003cwh.4 NM_173546 CCDS2791 Q8IXV7 MGI:1925517 RGD:1359445 KLHDC8B 613169 +HGNC:28489 KLHDC9 kelch domain containing 9 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 KARCA1 kelch/ankyrin repeat containing cyclin A1 interacting protein 2007-07-19 2014-11-19 126823 ENSG00000162755 OTTHUMG00000031479 uc001fxr.4 BC022077 NM_152366 "CCDS30919|CCDS41425" Q8NEP7 15159402 MGI:1916124 RGD:1561025 KLHDC9 +HGNC:22194 KLHDC10 kelch domain containing 10 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 "KIAA0265|slim" scruin like at the midline homolog (Drosophila) 2008-08-20 2014-11-19 23008 ENSG00000128607 OTTHUMG00000157654 uc003vpj.3 XM_005250233 CCDS5815 Q6PID8 MGI:1924038 RGD:1309792 KLHDC10 615152 +HGNC:6352 KLHL1 kelch like family member 1 protein-coding gene gene with protein product Approved 13q21.33 13q21.33 "KIAA1490|MRP2|FLJ30047" "Kelch-like protein 1|Mayven-related protein 2" "kelch (Drosophila)-like 1|kelch-like 1 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 1999-11-26 2015-11-18 2016-10-05 57626 ENSG00000150361 OTTHUMG00000017056 uc001vip.4 AB040923 NM_020866 "CCDS9445|CCDS73582" Q9NR64 10888605 MGI:2136335 RGD:1307452 KLHL1 605332 +HGNC:6353 KLHL2 kelch like family member 2 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 MAV mayven "kelch (Drosophila)-like 2 (Mayven)|kelch-like 2, Mayven (Drosophila)" "Kelch like|BTB domain containing" "617|861" 1999-12-14 2015-11-18 2016-10-05 11275 ENSG00000109466 OTTHUMG00000161294 uc003irb.4 AF059569 XM_011531572 "CCDS34094|CCDS54815|CCDS54816|CCDS82974|CCDS82975" O95198 "10397770|16035103" MGI:1924363 RGD:1306388 KLHL2 605774 +HGNC:44046 KLHL2P1 kelch like family member 2 pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 MAVP1 kelch-like 2, Mayven (Drosophila) pseudogene 1 2012-05-29 2015-11-18 2015-11-18 729249 ENSG00000250412 OTTHUMG00000161332 NG_012269 PGOHUM00000250793 +HGNC:6354 KLHL3 kelch like family member 3 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 KIAA1129 "kelch (Drosophila)-like 3|kelch-like 3 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 1999-11-26 2015-11-18 2016-10-05 26249 ENSG00000146021 OTTHUMG00000129155 uc010jek.3 AB032955 NM_017415 "CCDS4192|CCDS58969|CCDS58970" Q9UH77 10843806 MGI:2445185 RGD:1565218 KLHL3 605775 303801 +HGNC:6355 KLHL4 kelch like family member 4 protein-coding gene gene with protein product Approved Xq21.3 Xq21.3 "KIAA1687|DKELCHL|KHL4" "kelch (Drosophila)-like 4|kelch-like 4 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2000-05-02 2015-11-18 2015-11-18 56062 ENSG00000102271 OTTHUMG00000021946 uc004efb.3 AF284765 NM_019117 "CCDS14456|CCDS14457" Q9C0H6 11401425 MGI:2442829 RGD:1565441 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KLHL4 KLHL4 300348 +HGNC:6356 KLHL5 kelch like family member 5 protein-coding gene gene with protein product Approved 4p14 04p14 "kelch (Drosophila)-like 5|kelch-like 5 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2000-06-09 2015-11-18 2016-10-05 51088 ENSG00000109790 OTTHUMG00000097819 uc003gtp.4 AF272976 XM_011513699 "CCDS3449|CCDS33974|CCDS33975|CCDS54756" Q96PQ7 "11590829|14672410" MGI:1919028 RGD:1309661 KLHL5 608064 +HGNC:18653 KLHL6 kelch like family member 6 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 FLJ00029 kelch-like protein KLHL6 kelch-like 6 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2002-05-21 2015-11-18 2016-10-05 89857 ENSG00000172578 OTTHUMG00000148673 uc003flr.4 AF441792 NM_130446 CCDS3245 Q8WZ60 "11214971|12617994" MGI:2686922 RGD:1307521 KLHL6 614214 +HGNC:40850 KLHL6-AS1 KLHL6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.1 03q27.1 KLHL6 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874019 ENSG00000242522 OTTHUMG00000158438 uc062qov.1 NR_046687 +HGNC:15646 KLHL7 kelch like family member 7 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "KLHL6|SBBI26|RP42" retinitis pigmentosa 42 kelch-like 7 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2002-05-21 2015-11-18 2016-04-25 55975 ENSG00000122550 OTTHUMG00000094813 uc003svs.5 NM_018846 "CCDS34609|CCDS5378|CCDS55095" Q8IXQ5 19520207 MGI:1196453 RGD:1305564 KLHL7 611119 201546 +HGNC:43431 KLHL7-AS1 KLHL7 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 7p15.3 07p15.3 PLATAK placental transcript antisense to KLHL7 "KLHL7 antisense RNA 1 (non-protein coding)|KLHL7 antisense RNA 1" 2011-10-21 2011-10-25 2012-10-17 2012-10-17 100775104 ENSG00000230658 OTTHUMG00000152580 uc003svo.1 AK054880 NR_046220 +HGNC:18644 KLHL8 kelch like family member 8 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 KIAA1378 kelch-like 8 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2002-06-10 2015-11-18 2016-10-05 57563 ENSG00000145332 OTTHUMG00000130593 uc003hql.2 AB037799 NM_001292003 "CCDS3617|CCDS75163|CCDS77937" Q9P2G9 MGI:2179430 RGD:1304685 KLHL8 611967 +HGNC:18732 KLHL9 kelch like family member 9 protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "KIAA1354|FLJ13568" kelch-like 9 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2002-06-12 2015-11-18 2016-10-05 55958 ENSG00000198642 OTTHUMG00000019669 uc003zoy.4 AB037775 NM_018847 CCDS6503 Q9P2J3 MGI:2180122 RGD:1304814 KLHL9 611201 409811 +HGNC:18829 KLHL10 kelch like family member 10 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 FLJ32662 kelch-like 10 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2002-07-29 2015-11-18 2015-11-18 317719 ENSG00000161594 OTTHUMG00000152510 uc010cxr.4 AK057224 NM_152467 CCDS42340 Q6JEL2 MGI:2181067 RGD:1303290 KLHL10 608778 +HGNC:19008 KLHL11 kelch like family member 11 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 FLJ10572 kelch-like 11 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2002-08-16 2015-11-18 2016-10-05 55175 ENSG00000178502 OTTHUMG00000133506 uc002hyf.2 NM_018143 CCDS11411 Q9NVR0 MGI:2388648 RGD:1306673 KLHL11 +HGNC:19360 KLHL12 kelch like family member 12 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 C3IP1 kelch-like 12 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2004-02-13 2015-11-18 2015-11-18 59349 ENSG00000117153 OTTHUMG00000041385 uc001gyo.2 AF190900 NM_021633 CCDS1429 Q53G59 "16547521|24334870" MGI:2385619 RGD:628717 KLHL12 614522 +HGNC:22931 KLHL13 kelch like family member 13 protein-coding gene gene with protein product Approved Xq24 Xq24 FLJ10262 "BKLHD2|KIAA1309" "BTB and kelch domain containing 2, KIAA1309|kelch-like 13 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2003-07-23 2004-02-18 2015-11-18 2016-10-05 90293 ENSG00000003096 OTTHUMG00000022252 uc022cde.2 AB037730 NM_033495 "CCDS14571|CCDS55479|CCDS55480|CCDS55481" Q9P2N7 10718198 MGI:1914705 RGD:1559646 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KLHL13 KLHL13 300655 +HGNC:29266 KLHL14 kelch like family member 14 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 KIAA1384 printor kelch-like 14 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2004-04-30 2015-11-18 2015-11-18 57565 ENSG00000197705 OTTHUMG00000179819 uc002kxm.2 AB037805 XM_011526109 CCDS32813 Q9P2G3 "10718198|19535332" MGI:1921249 RGD:1566178 KLHL14 613772 +HGNC:29347 KLHL15 kelch like family member 15 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 KIAA1677 kelch-like 15 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2004-06-14 2015-11-18 2016-10-05 80311 ENSG00000174010 OTTHUMG00000021261 uc004dba.5 AB051464 XM_040383 CCDS35217 Q96M94 "11214970|14702039" MGI:1923400 RGD:1563101 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KLHL15 KLHL15 300980 +HGNC:24023 KLHL17 kelch like family member 17 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 actinfilin kelch-like 17 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2004-08-05 2015-11-18 2016-10-05 339451 ENSG00000187961 OTTHUMG00000040721 uc001aca.3 AY423763 NM_198317 CCDS30550 Q6TDP4 12063253 MGI:2678948 RGD:708444 KLHL17 +HGNC:29120 KLHL18 kelch like family member 18 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "KIAA0795|FLJ13703" kelch-like 18 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2004-07-28 2015-11-18 2016-10-05 23276 ENSG00000114648 OTTHUMG00000156522 uc003crd.4 AB018338 NM_025010 CCDS33749 O94889 9872452 MGI:2143315 RGD:1310570 KLHL18 +HGNC:25056 KLHL20 kelch like family member 20 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "KLEIP|KHLHX" kelch-like 20 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2005-02-03 2015-11-18 2015-11-18 27252 ENSG00000076321 OTTHUMG00000040548 uc001gjc.5 AB026190 NM_014458 CCDS1310 Q9Y2M5 "14668487|20389280" MGI:2444855 RGD:1309490 KLHL20 +HGNC:29041 KLHL21 kelch like family member 21 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 KIAA0469 kelch-like 21 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2004-12-23 2015-11-18 2016-10-05 9903 ENSG00000162413 OTTHUMG00000001437 uc001aoa.3 AK090472 NM_014851 CCDS30575 Q9UJP4 MGI:1919288 RGD:1305863 KLHL21 616262 +HGNC:25888 KLHL22 kelch like family member 22 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "FLJ14360|KELCHL" kelch-like 22 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2005-05-19 2015-11-18 2015-11-18 84861 ENSG00000099910 OTTHUMG00000188269 uc002zsl.2 NM_032775 CCDS13780 Q53GT1 24067371 MGI:1337995 RGD:1306288 KLHL22 +HGNC:27506 KLHL23 kelch like family member 23 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "MGC2610|FLJ37812|MGC22679" kelch-like 23 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2005-05-19 2015-11-18 2015-11-18 151230 ENSG00000213160 OTTHUMG00000132213 uc002ufh.3 BC010437 NM_144711 CCDS2236 Q8NBE8 MGI:2683536 RGD:1307166 KLHL23 +HGNC:25947 KLHL24 kelch like family member 24 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "DRE1|FLJ20059" kelch-like 24 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2005-09-10 2015-11-18 2015-11-18 54800 ENSG00000114796 OTTHUMG00000156911 uc003flw.4 NM_017644 CCDS3246 Q6TFL4 MGI:1923035 RGD:727971 KLHL24 611295 +HGNC:25732 KLHL25 kelch like family member 25 protein-coding gene gene with protein product Approved 15q25.3 15q25.3 "FLJ12587|ENC2|ENC-2" ectodermal-neural cortex 2 kelch-like 25 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2005-11-17 2015-11-18 2015-11-18 64410 ENSG00000183655 OTTHUMG00000148672 uc002bly.5 NM_022480 CCDS10339 Q9H0H3 MGI:2668031 RGD:1310815 KLHL25 +HGNC:25623 KLHL26 kelch like family member 26 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 kelch-like 26 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2006-01-23 2015-11-18 2015-11-18 55295 ENSG00000167487 OTTHUMG00000183114 uc002njz.2 NM_018316 CCDS12384 Q53HC5 MGI:2443079 RGD:1312034 KLHL26 +HGNC:19741 KLHL28 kelch like family member 28 protein-coding gene gene with protein product Approved 14q21.2 14q21.2 FLJ20081 BTBD5 "BTB (POZ) domain containing 5|kelch-like 28 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2002-11-20 2007-01-09 2015-11-18 2016-10-05 54813 ENSG00000179454 OTTHUMG00000140263 uc001wvr.4 AK000088 XM_005267770 "CCDS9680|CCDS76675" Q9NXS3 MGI:1913939 RGD:1311326 KLHL28 +HGNC:29404 KLHL29 kelch like family member 29 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 KIAA1921 KBTBD9 "kelch repeat and BTB (POZ) domain containing 9|kelch-like 29 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2004-01-05 2007-01-09 2015-11-18 2016-10-05 114818 ENSG00000119771 OTTHUMG00000151899 uc010ykg.3 NM_052920 CCDS54335 Q96CT2 11572484 MGI:2683857 RGD:1311076 KLHL29 +HGNC:24770 KLHL30 kelch like family member 30 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 FLJ43374 kelch-like 30 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2007-01-09 2015-11-18 2016-04-25 377007 ENSG00000168427 OTTHUMG00000152905 uc002vxr.3 NM_198582 CCDS46555 Q0D2K2 MGI:1918038 RGD:1309644 KLHL30 +HGNC:31018 KLHL30-AS1 KLHL30 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q37.3 02q37.3 C2orf19 "chromosome 2 open reading frame 19|KLHL30 antisense RNA 1 (non-protein coding)" 2004-01-19 2011-12-07 2012-08-15 2014-11-19 394261 ENSG00000279484 OTTHUMG00000152904 uc061udl.1 BC031945 Q8NEE0 +HGNC:21353 KLHL31 kelch like family member 31 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "bA345L23.2|BKLHD6" KBTBD1 "kelch repeat and BTB (POZ) domain containing 1|kelch-like 31 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2003-11-26 2007-01-09 2015-11-18 2015-11-18 401265 ENSG00000124743 OTTHUMG00000014882 uc003pcb.4 NM_001003760 CCDS34478 Q9H511 MGI:3045305 RGD:1560540 KLHL31 610749 +HGNC:21221 KLHL32 kelch like family member 32 protein-coding gene gene with protein product Approved 6q16.1 06q16.1 "BKLHD5|KIAA1900" "BTB and kelch domain containing 5|KIAA1900|kelch-like 32 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2003-11-21 2007-01-09 2015-11-18 2016-10-05 114792 ENSG00000186231 OTTHUMG00000015247 uc011eae.1 AB067487 NM_052904 "CCDS5038|CCDS69154|CCDS69155|CCDS75495" Q96NJ5 MGI:3612790 RGD:1310364 KLHL32 +HGNC:31952 KLHL33 kelch like family member 33 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 kelch-like 33 (Drosophila) Kelch like 617 2007-08-24 2015-11-18 2015-11-18 123103 ENSG00000185271 OTTHUMG00000170982 uc010tli.2 XM_063481 CCDS53882 A6NCF5 MGI:3644593 RGD:2324282 KLHL33 +HGNC:26634 KLHL34 kelch like family member 34 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 "FLJ34960|RP11-450P7.3" kelch-like 34 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2007-01-10 2015-11-18 2015-11-18 257240 ENSG00000185915 OTTHUMG00000021234 uc004czz.2 AK092279 NM_153270 CCDS14199 Q8N239 MGI:2685234 RGD:1560439 KLHL34 +HGNC:26597 KLHL35 kelch like family member 35 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 FLJ33790 kelch-like 35 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2008-07-07 2015-11-18 2016-04-25 283212 ENSG00000149243 OTTHUMG00000133573 uc001owm.3 NM_173583 CCDS44685 Q6PF15 MGI:1919434 RGD:1565895 KLHL35 +HGNC:17844 KLHL36 kelch like family member 36 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 FLJ12543 C16orf44 "chromosome 16 open reading frame 44|kelch-like 36 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2001-12-19 2008-07-07 2015-11-18 2015-11-18 79786 ENSG00000135686 OTTHUMG00000137642 uc002fig.4 AK022605 XM_017023674 "CCDS10948|CCDS76909" Q8N4N3 MGI:2385305 RGD:1561366 KLHL36 +HGNC:34435 KLHL38 kelch like family member 38 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 C8ORFK36 kelch-like 38 (Drosophila) "Kelch like|BTB domain containing" "617|861" 2008-07-25 2015-11-18 2015-11-18 340359 ENSG00000175946 OTTHUMG00000164983 uc003yqs.2 XM_005250901 CCDS43766 Q2WGJ6 MGI:3045310 RGD:1564169 KLHL38 +HGNC:30372 KLHL40 kelch like family member 40 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "SRYP|NEM8" "sarcosynapsin|nemaline myopathy type 8" KBTBD5 "kelch repeat and BTB (POZ) domain containing 5|kelch-like 40 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2003-12-16 2013-01-08 2015-11-18 2016-10-05 131377 ENSG00000157119 OTTHUMG00000133045 uc003clv.2 AK056577 NM_152393 CCDS2703 Q2TBA0 23746549 MGI:1919580 RGD:1305368 615340 358562 +HGNC:16905 KLHL41 kelch like family member 41 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "SARCOSIN|Krp1" sarcomeric muscle protein KBTBD10 "kelch repeat and BTB (POZ) domain containing 10|kelch-like 41 (Drosophila)" "Kelch like|BTB domain containing" "617|861" 2004-01-15 2013-01-08 2015-11-18 2015-11-18 10324 ENSG00000239474 OTTHUMG00000132205 uc002ueu.1 AF056929 NM_006063 CCDS2234 O60662 9655184 MGI:2683854 RGD:620852 607701 376977 +HGNC:29252 KLHL42 kelch like family member 42 protein-coding gene gene with protein product Approved 12p11.22 12p11.22 "KIAA1340|Ctb9" KLHDC5 kelch domain containing 5 Kelch like 617 2005-02-08 2013-01-30 2015-11-18 2015-11-18 57542 ENSG00000087448 OTTHUMG00000169217 uc001rij.4 AB037761 NM_020782 CCDS31763 Q9P2K6 19261606 MGI:2444786 RGD:1560924 +HGNC:6357 KLK1 kallikrein 1 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 Klk6 kallikrein 1, renal/pancreas/salivary Kallikreins 616 1988-06-27 2006-10-27 2014-11-19 3816 ENSG00000167748 OTTHUMG00000182876 uc002ptk.3 L10038 NM_002257 CCDS12804 P06870 "1684954|16800724|16800723" MGI:102850 RGD:2969 KLK1 147910 objectId:2865 3.4.21.35 +HGNC:6363 KLK2 kallikrein related peptidase 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 kallikrein 2, prostatic Kallikreins 616 1988-08-11 2015-11-13 2015-11-13 3817 ENSG00000167751 OTTHUMG00000182963 uc002ptv.4 M18157 NM_005551.3 "CCDS12808|CCDS42597|CCDS58675" P20151 "2468530|16800724|16800723" KLK2 147960 S01.161 objectId:2372 3.4.21.35 +HGNC:6364 KLK3 kallikrein related peptidase 3 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 PSA APS kallikrein 3, (prostate specific antigen) Kallikreins 616 2001-06-22 2015-11-13 2015-11-13 354 ENSG00000142515 OTTHUMG00000182867 uc021uyi.2 X14810 NM_145864 "CCDS12807|CCDS33083|CCDS46155" P07288 "2456523|2436946|16800724|16800723" "MGI:95291|MGI:95293|MGI:97320|MGI:97322|MGI:102850|MGI:891980|MGI:891981|MGI:891982|MGI:892018|MGI:892019|MGI:892020|MGI:892021|MGI:892022|MGI:892023" KLK3 176820 S01.162 objectId:2373 +HGNC:6365 KLK4 kallikrein related peptidase 4 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "EMSP|EMSP1|PSTS|KLK-L1" PRSS17 kallikrein 4 (prostase, enamel matrix, prostate) "Kallikreins|Proteases, serine" "616|738" 1999-04-29 2015-11-13 2015-11-13 9622 ENSG00000167749 OTTHUMG00000182964 uc002pua.1 AF113141 NM_004917 CCDS12809 Q9Y5K2 "10077646|10438493|16800724|10863090|9465170" MGI:1861379 RGD:1303228 KLK4 603767 139168 S01.251 objectId:2374 +HGNC:6366 KLK5 kallikrein related peptidase 5 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "SCTE|KLK-L2" kallikrein 5 Kallikreins 616 2000-03-16 2015-11-13 2016-03-14 25818 ENSG00000167754 OTTHUMG00000183097 uc002puf.4 AF135028 NM_012427 CCDS12810 Q9Y337 "10514489|10608802|16800724|17012259" MGI:1915918 RGD:1593461 KLK5 605643 S01.017 objectId:2375 +HGNC:6367 KLK6 kallikrein related peptidase 6 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 "Bssp|Klk7|neurosin" "PRSS9|PRSS18" "protease, serine, 18|kallikrein 6 (neurosin, zyme)" "Kallikreins|Proteases, serine" "616|738" 1997-06-09 2015-11-13 2015-11-13 5653 ENSG00000167755 OTTHUMG00000183098 uc002pul.3 U62801 NM_002774 "CCDS12811|CCDS42599" Q92876 "9003450|16800724|16800723" MGI:1343166 RGD:3419 KLK6 602652 S01.236 objectId:2376 +HGNC:6368 KLK7 kallikrein related peptidase 7 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 SCCE PRSS6 kallikrein 7 (chymotryptic, stratum corneum) "Kallikreins|Proteases, serine" "616|738" 1995-06-14 2015-11-13 2015-11-13 5650 ENSG00000169035 OTTHUMG00000182917 uc002puo.4 L33404 NM_005046 "CCDS12812|CCDS59414" P49862 "8034709|16800724|16800723" MGI:1346336 RGD:1306420 KLK7 604438 S01.300 objectId:2377 +HGNC:6369 KLK8 kallikrein related peptidase 8 protein-coding gene gene with protein product Approved 19q13 19q13 "HNP|TADG14|neuropsin|ovasin" PRSS19 kallikrein 8 (neuropsin/ovasin) "Kallikreins|Proteases, serine" "616|738" 1999-09-09 2015-11-13 2015-11-13 11202 ENSG00000129455 OTTHUMG00000183086 uc002pur.2 AB008390 NM_007196 "CCDS12813|CCDS12814|CCDS12815|CCDS42600|CCDS74433" O60259 "10102990|9714609|16800724|16800723" MGI:1343327 RGD:1305998 KLK8 605644 S01.244 objectId:2378 +HGNC:6370 KLK9 kallikrein related peptidase 9 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 KLK-L3 kallikrein 9 Kallikreins 616 2000-03-16 2015-11-13 2015-11-13 284366 ENSG00000213022 OTTHUMG00000183087 uc002pux.2 AF135026 NM_012315 CCDS12816 Q9UKQ9 "16800724|16800723" MGI:1921082 RGD:1308280 KLK9 605504 S01.307 +HGNC:6358 KLK10 kallikrein related peptidase 10 protein-coding gene gene with protein product Approved 19q13 19q13 NES1 PRSSL1 kallikrein 10 Kallikreins 616 1997-05-09 2015-11-13 2015-11-13 5655 ENSG00000129451 OTTHUMG00000182916 uc002pva.4 AF024605 NM_002776 CCDS12817 O43240 "8764136|9533035|16800724|16800723|10675891" MGI:1916790 RGD:1303242 KLK10 602673 S01.246 +HGNC:6359 KLK11 kallikrein related peptidase 11 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 TLSP PRSS20 kallikrein 11 "Kallikreins|Proteases, serine" "616|738" 1999-10-19 2015-11-13 2015-11-13 11012 ENSG00000167757 OTTHUMG00000182915 uc002pvd.2 AB012917 NM_006853 "CCDS12818|CCDS12819|CCDS54297" Q9UBX7 "9765601|10662548|16800724|16800723" MGI:1929977 RGD:1308690 KLK11 604434 S01.257 +HGNC:6360 KLK12 kallikrein related peptidase 12 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 KLK-L5 kallikrein 12 Kallikreins 616 2000-03-16 2015-11-13 2016-10-05 43849 ENSG00000186474 OTTHUMG00000165806 uc002pvh.2 NM_019598 "CCDS12820|CCDS12821|CCDS54298" Q9UKR0 "16800724|16800723" MGI:1916761 RGD:1308975 KLK12 605539 S01.020 +HGNC:6361 KLK13 kallikrein related peptidase 13 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 KLK-L4 kallikrein 13 Kallikreins 616 2000-03-16 2015-11-13 2015-11-13 26085 ENSG00000167759 OTTHUMG00000182912 uc002pvn.4 NM_015596 CCDS12822 Q9UKR3 "16800724|16800723" MGI:3615275 RGD:1309337 KLK13 605505 S01.306 +HGNC:6362 KLK14 kallikrein related peptidase 14 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 KLK-L6 kallikrein 14 Kallikreins 616 2000-03-16 2015-11-13 2016-10-05 43847 ENSG00000129437 OTTHUMG00000143721 uc061bwe.1 AF283670 NM_022046 CCDS12823 Q9P0G3 "16800724|16800723" MGI:2447564 RGD:1308606 KLK14 606135 S01.029 objectId:2866 +HGNC:20453 KLK15 kallikrein related peptidase 15 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "HSRNASPH|ACO|prostinogen" kallikrein 15 Kallikreins 616 2004-04-20 2015-11-13 2016-04-25 55554 ENSG00000174562 OTTHUMG00000183116 uc002ptl.4 AF242195 NM_017509 "CCDS12805|CCDS12806|CCDS62766" Q9H2R5 "11010966|12439720|16800724|16800723" MGI:2447533 RGD:1310995 KLK15 610601 S01.081 +HGNC:6371 KLKB1 kallikrein B1 protein-coding gene gene with protein product Approved 4q35.2 04q35.2 Fletcher factor KLK3 kallikrein B, plasma (Fletcher factor) 1 Kallikreins 616 1999-04-23 2015-11-13 2016-10-05 3818 ENSG00000164344 OTTHUMG00000150347 uc003iyy.4 M13143 NM_000892 "CCDS34120|CCDS82982" P03952 "9535413|3521732" MGI:102849 RGD:67382 KLKB1 229000 122872 S01.212 objectId:2379 +HGNC:21260 KLKP1 kallikrein pseudogene 1 pseudogene pseudogene Approved 19q13.33 19q13.33 "YKLK1|PsiKLK1|KLK31P" kallikrein 31 pseudogene 2005-08-04 2014-03-18 606293 ENSG00000197588 OTTHUMG00000183118 AY302756 NG_005220 Q107X0 "15498522|16541416|18196551" S01.P08 +HGNC:37212 KLLN killin, p53-regulated DNA replication inhibitor protein-coding gene gene with protein product Approved 10q23 10q23 killin 2011-02-18 2011-02-18 2016-10-12 100144748 ENSG00000227268 OTTHUMG00000186455 uc009xti.3 NM_001126049 CCDS44454 B2CW77 18385383 RGD:7720631 LRG_1087|http://www.lrg-sequence.org/LRG/LRG_1087 KLLN 612105 326886 +HGNC:6372 KLRA1P killer cell lectin like receptor A1, pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 "Ly49|LY49L" "KLRA1|KLRAP1" "killer cell lectin-like receptor subfamily A, member 1|killer cell lectin-like receptor subfamily A pseudogene 1" Killer cell lectin like receptors 621 1998-01-16 2016-01-14 2016-01-14 2016-01-14 10748 ENSG00000256667 OTTHUMG00000160127 AF047445 NR_028045 9645365 604274 +HGNC:6373 KLRB1 killer cell lectin like receptor B1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CD161|NKR-P1|NKR-P1A|hNKR-P1A|CLEC5B" natural killer cell surface protein P1A NKR killer cell lectin-like receptor subfamily B, member 1 "CD molecules|C-type lectin domain family|Killer cell lectin like receptors" "471|494|621" 1998-01-16 2016-01-14 2016-10-05 3820 ENSG00000111796 OTTHUMG00000168581 uc010sgt.3 U11276 NM_002258 CCDS8601 Q12918 8077657 "MGI:107540|MGI:107539|MGI:107538" RGD:1586149 KLRB1 602890 CD161 +HGNC:6374 KLRC1 killer cell lectin like receptor C1 protein-coding gene gene with protein product Approved 12p13 12p13 "NKG2-A|NKG2-B|CD159a" NKG2-1/B activating NK receptor NKG2 killer cell lectin-like receptor subfamily C, member 1 "CD molecules|Killer cell lectin like receptors|C-type lectin domain containing" "471|621|1298" 1998-01-16 2016-01-14 2016-01-14 3821 ENSG00000134545 OTTHUMG00000168584 uc001qyn.5 U54782 NM_002259 "CCDS8625|CCDS8626|CCDS76531" P26715 9598306 MGI:1336161 RGD:2976 KLRC1 161555 objectId:2849 CD159a +HGNC:6375 KLRC2 killer cell lectin like receptor C2 protein-coding gene gene with protein product Approved 12p13 12p13 "NKG2-C|CD159c" killer cell lectin-like receptor subfamily C, member 2 "CD molecules|Killer cell lectin like receptors|C-type lectin domain containing" "471|621|1298" 1998-01-16 2016-01-14 2016-01-14 3822 ENSG00000205809 OTTHUMG00000168532 uc001qyk.4 X54869 NM_002260 CCDS31745 P26717 9598306 MGI:1336162 KLRC2 602891 CD159c +HGNC:6376 KLRC3 killer cell lectin like receptor C3 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 NKG2-E killer cell lectin-like receptor subfamily C, member 3 "Killer cell lectin like receptors|C-type lectin domain containing" "621|1298" 1998-01-16 2016-01-14 2016-10-05 3823 ENSG00000205810 OTTHUMG00000167149 uc001qyi.2 L14542 NM_002261 "CCDS31744|CCDS41755" Q07444 9598306 MGI:1929720 RGD:2977 KLRC3 602892 +HGNC:6377 KLRC4 killer cell lectin like receptor C4 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 NKG2-F killer cell lectin-like receptor subfamily C, member 4 Killer cell lectin like receptors 621 1998-09-03 2016-01-14 2016-10-05 8302 ENSG00000183542 OTTHUMG00000168575 uc001qye.4 U96846 NM_013431 CCDS8624 O43908 9598306 KLRC4 602893 449077 +HGNC:48357 KLRC4-KLRK1 KLRC4-KLRK1 readthrough other readthrough Approved 12p13.2 12p13.2 2013-09-25 2013-09-25 100528032 ENSG00000255819 OTTHUMG00000168531 NM_001199805 +HGNC:6378 KLRD1 killer cell lectin like receptor D1 protein-coding gene gene with protein product Approved 12p13 12p13 CD94 killer cell lectin-like receptor subfamily D, member 1 "CD molecules|Killer cell lectin like receptors|C-type lectin domain containing" "471|621|1298" 1998-01-16 2016-01-14 2016-01-14 3824 ENSG00000134539 OTTHUMG00000168419 uc001qxw.5 U30610 NM_002262 "CCDS8621|CCDS8622" Q13241 7589107 MGI:1196275 RGD:2978 KLRD1 602894 CD94 +HGNC:13342 KLRF1 killer cell lectin like receptor F1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CLEC5C|NKp80" killer cell lectin-like receptor subfamily F, member 1 "C-type lectin domain family|Killer cell lectin like receptors" "494|621" 2001-07-20 2016-01-14 2016-01-14 51348 ENSG00000150045 OTTHUMG00000168391 uc031yua.2 AF175206 NM_016523 "CCDS41750|CCDS76526|CCDS76527" Q9NZS2 10671213 KLRF1 605029 +HGNC:37646 KLRF2 killer cell lectin like receptor F2 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 NKp65 killer cell lectin-like receptor subfamily F, member 2 "Killer cell lectin like receptors|C-type lectin domain containing" "621|1298" 2010-06-30 2016-01-14 2016-01-14 100431172 ENSG00000256797 OTTHUMG00000187141 uc021quy.1 NM_001190765 CCDS53743 D3W0D1 20194751 RGD:2975 KLRF2 +HGNC:6380 KLRG1 killer cell lectin like receptor G1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "MAFA|2F1|MAFA-L|CLEC15A" C-type lectin domain family 15, member A killer cell lectin-like receptor subfamily G, member 1 "C-type lectin domain family|Killer cell lectin like receptors" "494|621" 1999-09-17 2016-01-14 2016-01-14 10219 ENSG00000139187 OTTHUMG00000168277 uc001qvg.4 AF097358 NM_005810 CCDS8599 Q96E93 "9862378|9842918|16461340|16140789" MGI:1355294 RGD:61978 KLRG1 604874 +HGNC:24778 KLRG2 killer cell lectin like receptor G2 protein-coding gene gene with protein product Approved 7q34 07q34 "FLJ44186|CLEC15B" C-type lectin domain family 15, member B killer cell lectin-like receptor subfamily G, member 2 "C-type lectin domain family|Killer cell lectin like receptors" "494|621" 2007-01-22 2016-01-14 2016-01-14 346689 ENSG00000188883 OTTHUMG00000157705 uc003vvb.4 AK126174 NM_198508 CCDS5854 A4D1S0 MGI:1921503 RGD:1587495 KLRG2 +HGNC:18788 KLRK1 killer cell lectin like receptor K1 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "NKG2D|KLR|NKG2-D|CD314" D12S2489E "DNA segment on chromosome 12 (unique) 2489 expressed sequence|killer cell lectin-like receptor subfamily K, member 1" "CD molecules|Killer cell lectin like receptors|C-type lectin domain containing" "471|621|1298" 2003-12-12 2016-01-14 2016-10-05 22914 ENSG00000213809 OTTHUMG00000168574 uc009zhj.4 AJ001687 NM_007360 CCDS8623 P26718 "9683661|2007850" MGI:1196250 RGD:3180 KLRK1 611817 CD314 +HGNC:6381 KMO kynurenine 3-monooxygenase protein-coding gene gene with protein product Approved 1q43 01q43 kynurenine 3-hydroxylase kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) 1998-12-18 2016-06-03 2016-10-05 8564 ENSG00000117009 OTTHUMG00000039635 uc009xgp.4 AF056032 NM_003679 CCDS1618 O15229 9237672 MGI:2138151 RGD:620610 KMO 603538 objectId:2886 1.14.13.9 +HGNC:6382 KMS Kabuki mental retardation syndrome phenotype phenotype only Approved reserved reserved Kabuki make-up syndrome 1989-05-23 2006-01-19 2011-02-11 +HGNC:7132 KMT2A lysine methyltransferase 2A protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "TRX1|HRX|ALL-1|HTRX1|CXXC7|MLL1A" MLL "myeloid/lymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog)|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)|lysine (K)-specific methyltransferase 2A" "PHD finger proteins|Zinc fingers CXXC-type|Lysine methyltransferases" "88|136|487" 1991-11-15 2013-05-09 2016-02-12 2016-10-12 4297 ENSG00000118058 OTTHUMG00000166337 L04284 NM_005933 "CCDS31686|CCDS55791" Q03164 1720549 MGI:96995 RGD:1586165 LRG_613|http://www.lrg-sequence.org/LRG/LRG_613 159555 123271 objectId:2688 +HGNC:15840 KMT2B lysine methyltransferase 2B protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "KIAA0304|MLL2|TRX2|HRX2|WBP7|MLL1B|MLL4|CXXC10" myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) 4 lysine (K)-specific methyltransferase 2B "PHD finger proteins|Zinc fingers CXXC-type|Lysine methyltransferases" "88|136|487" 2013-05-09 2016-02-12 2016-02-12 9757 ENSG00000272333 OTTHUMG00000048119 AJ007041 NM_014727 CCDS46055 Q9UMN6 "10409430|10637508" MGI:109565 RGD:7678027 606834 objectId:2689 +HGNC:13726 KMT2C lysine methyltransferase 2C protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "KIAA1506|HALR" MLL3 "myeloid/lymphoid or mixed-lineage leukemia 3|lysine (K)-specific methyltransferase 2C" "PHD finger proteins|Lysine methyltransferases" "88|487" 2000-11-08 2013-05-09 2016-02-12 2016-10-05 58508 ENSG00000055609 OTTHUMG00000150553 AF264750 XM_017012480 CCDS5931 Q8NEZ4 10819331 MGI:2444959 RGD:1587205 606833 objectId:2690 +HGNC:7133 KMT2D lysine methyltransferase 2D protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "ALR|MLL4|CAGL114" "TNRC21|MLL2" "trinucleotide repeat containing 21|myeloid/lymphoid or mixed-lineage leukemia 2|lysine (K)-specific methyltransferase 2D" "PHD finger proteins|Lysine methyltransferases|Trinucleotide repeat containing" "88|487|775" 1998-10-14 2013-05-09 2016-02-12 2016-02-12 8085 ENSG00000167548 OTTHUMG00000166524 AF010403 XM_011538770 CCDS44873 O14686 9247308 MGI:2682319 RGD:2324324 KMT2D 602113 239011 objectId:2691 +HGNC:18541 KMT2E lysine methyltransferase 2E protein-coding gene gene with protein product Approved 7q22.3 07q22.3 HDCMC04P MLL5 "myeloid/lymphoid or mixed-lineage leukemia 5 (trithorax homolog, Drosophila)|lysine (K)-specific methyltransferase 2E" "PHD finger proteins|Lysine methyltransferases" "88|487" 2002-06-07 2013-05-09 2016-02-12 2016-10-05 55904 ENSG00000005483 OTTHUMG00000157403 AF067804 XM_017012435 CCDS34723 Q8IZD2 "9218106|7672722" MGI:1924825 RGD:1309641 608444 objectId:2692 +HGNC:40845 KMT2E-AS1 KMT2E antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 7q22.3 07q22.3 LOC100216545 2013-07-23 2014-11-19 100216545 ENSG00000239569 OTTHUMG00000157280 NR_024586 +HGNC:29489 KMT5A lysine methyltransferase 5A protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "SET8|SET07|PR-Set7" SETD8 "SET domain containing (lysine methyltransferase) 8|lysine (K)-specific methyltransferase 5A" Lysine methyltransferases 487 2006-02-15 2015-11-05 2016-02-12 2016-02-12 387893 ENSG00000183955 OTTHUMG00000150477 uc001uew.4 AY102937 NM_020382 CCDS9247 Q9NQR1 "15933070|12086618|12121615" MGI:1915206 RGD:1587560 607240 objectId:2704 +HGNC:24283 KMT5B lysine methyltransferase 5B protein-coding gene gene with protein product Approved 11q13.2 11q13.2 CGI-85 SUV420H1 "suppressor of variegation 4-20 homolog 1 (Drosophila)|lysine (K)-specific methyltransferase 5B" Lysine methyltransferases 487 2004-07-13 2015-11-05 2016-02-12 2016-02-12 51111 ENSG00000110066 OTTHUMG00000150484 uc001onm.2 AL512763 NM_017635 "CCDS31623|CCDS44660|CCDS76444" Q4FZB7 "10810093|11401438" MGI:2444557 RGD:1311637 610881 objectId:2717 +HGNC:28405 KMT5C lysine methyltransferase 5C protein-coding gene gene with protein product Approved 19q13.42 19q13.42 MGC2705 SUV420H2 "suppressor of variegation 4-20 homolog 2 (Drosophila)|lysine (K)-specific methyltransferase 5C" Lysine methyltransferases 487 2004-07-13 2015-11-05 2016-02-12 2016-02-12 84787 ENSG00000133247 OTTHUMG00000150483 uc002qkj.5 BC005842 NM_032701 CCDS12922 Q86Y97 19486527 MGI:2385262 RGD:1305226 613198 objectId:2718 +HGNC:26488 KNCN kinocilin protein-coding gene gene with protein product Approved 1p33 01p33 "FLJ32011|KINO|L5" 2007-06-08 2006-10-26 2014-02-12 148930 ENSG00000162456 OTTHUMG00000007987 uc009vyh.2 AK056573 NM_182516 "CCDS44133|CCDS81316" A6PVL3 15855039 MGI:3614952 RGD:1584061 KNCN 611455 +HGNC:29374 KNDC1 kinase non-catalytic C-lobe domain containing 1 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "KIAA1768|bB439H18.3|FLJ25027" "RASGEF2|C10orf23" "RasGEF domain family, member 2|kinase non-catalytic C-lobe domain (KIND) containing 1" 2004-03-16 2016-06-21 2016-06-21 85442 ENSG00000171798 OTTHUMG00000019303 uc001llz.2 AK074179 NM_152643 CCDS7674 Q76NI1 11214970 MGI:1923734 RGD:1565261 KNDC1 616237 +HGNC:6383 KNG1 kininogen 1 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 BK "alpha-2-thiol proteinase inhibitor|bradykinin" "KNG|BDK" kininogen "Endogenous ligands|Cystatins, type 3" "542|967" 1990-07-26 2004-05-26 2004-05-21 2014-11-19 3827 ENSG00000113889 OTTHUMG00000150348 uc003fqr.4 NM_001102416 "CCDS3281|CCDS43183|CCDS54695" P01042 1733668 "MGI:1097705|MGI:3027157" RGD:2980 KNG1 612358 122875 +HGNC:24054 KNL1 kinetochore scaffold 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "D40|AF15Q14|CT29|KIAA1570|hKNL-1|hSpc105|PPP1R55|Spc7" "cancer/testis antigen 29|kinetochore null 1 homolog (C. elegans)|blinkin, bub-linking kinetochore protein|protein phosphatase 1, regulatory subunit 55" "MCPH4|CASC5" "microcephaly, primary autosomal recessive 4|cancer susceptibility candidate 5" Protein phosphatase 1 regulatory subunits 694 2005-04-05 2016-06-13 2016-06-13 2016-10-05 57082 ENSG00000137812 OTTHUMG00000166532 uc010bbs.2 AF173994 NM_144508 "CCDS42023|CCDS42024" Q8NG31 "10980622|10780384|18045986" MGI:1923714 RGD:6494213 609173 315787 +HGNC:34404 KNOP1 lysine rich nucleolar protein 1 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "101F10.1|FAM191A|TSG118" "family with sequence similarity 191, member A|testis-specific gene 118" C16orf88 chromosome 16 open reading frame 88 2008-07-11 2013-03-12 2016-06-06 2016-06-06 400506 ENSG00000103550 uc002dgq.4 BC047010 NM_001012991 CCDS42127 Q1ED39 MGI:1913606 RGD:1565096 +HGNC:48919 KNOP1P1 lysine rich nucleolar protein 1 pseudogene 1 pseudogene pseudogene Approved 12p12.1 12p12.1 2013-07-05 2016-06-06 2016-06-06 100129937 ENSG00000256852 OTTHUMG00000169059 NG_029610 PGOHUM00000251017 +HGNC:48920 KNOP1P2 lysine rich nucleolar protein 1 pseudogene 2 pseudogene pseudogene Approved 12q12 12q12 2013-07-05 2016-06-06 2016-06-06 100420898 ENSG00000270429 OTTHUMG00000184793 NG_024004 PGOHUM00000239432 +HGNC:48921 KNOP1P3 lysine rich nucleolar protein 1 pseudogene 3 pseudogene pseudogene Approved 2p16.3 02p16.3 2013-07-05 2016-06-06 2016-06-06 100128029 ENSG00000224344 OTTHUMG00000102135 NG_021563 PGOHUM00000240640 +HGNC:48922 KNOP1P4 lysine rich nucleolar protein 1 pseudogene 4 pseudogene pseudogene Approved 6q13 06q13 2013-07-05 2016-06-06 2016-06-06 100420843 ENSG00000232422 OTTHUMG00000015016 NG_025954 PGOHUM00000243671 +HGNC:48923 KNOP1P5 lysine rich nucleolar protein 1 pseudogene 5 pseudogene pseudogene Approved 8q24.13 08q24.13 2013-07-05 2016-06-06 2016-06-06 100130158 ENSG00000250563 OTTHUMG00000160537 NG_022436 PGOHUM00000249796 +HGNC:6385 KNPEP entry withdrawn withdrawn withdrawn Entry Withdrawn Aminopeptidases 104 2015-02-27 +HGNC:30767 KNSTRN kinetochore localized astrin/SPAG5 binding protein protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "FLJ14502|SKAP|kinastrin|TRAF4AF1" "small kinetochore-associated protein|kinetochore-localized astrin-binding protein|TRAF4 associated factor 1" C15orf23 chromosome 15 open reading frame 23 2004-06-25 2012-12-04 2016-06-20 2016-06-20 90417 ENSG00000128944 OTTHUMG00000172454 uc001zll.4 AK027408 NM_001142761 "CCDS42021|CCDS45226|CCDS45227" Q9Y448 12477932 MGI:1289298 RGD:1303240 614718 +HGNC:17255 KNTC1 kinetochore associated 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "KIAA0166|ROD" rough deal homolog (Drosophila) 2001-12-19 2015-08-28 9735 ENSG00000184445 OTTHUMG00000168861 uc001ucv.4 XM_011539027 CCDS45002 P50748 "11146660|11590237" MGI:2673709 RGD:1307905 KNTC1 607363 +HGNC:6394 KPNA1 karyopherin subunit alpha 1 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "SRP1|RCH2|NPI-1|IPOA5" importin alpha 5 "karyopherin alpha 1 (importin alpha 5)|karyopherin alpha 1" "Armadillo repeat containing|Importins" "409|596" 1997-03-19 2016-02-01 2016-10-05 3836 ENSG00000114030 OTTHUMG00000159487 uc003efe.3 S75295 NM_002264 CCDS3013 P52294 8052633 MGI:103560 RGD:735064 KPNA1 600686 +HGNC:6395 KPNA2 karyopherin subunit alpha 2 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 "SRP1alpha|IPOA1|QIP2" "RAG cohort 1|importin alpha 1" RCH1 "karyopherin alpha 2 (RAG cohort 1, importin alpha 1)|karyopherin alpha 2" "Armadillo repeat containing|Importins" "409|596" 1997-03-19 2016-02-01 2016-02-01 3838 ENSG00000182481 OTTHUMG00000179784 uc002jgk.4 U09559 NM_002266 CCDS32713 P52292 "8016130|7754385" MGI:103561 RGD:621419 KPNA2 600685 +HGNC:6396 KPNA3 karyopherin subunit alpha 3 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "SRP1gamma|SRP4|hSRP1|IPOA4" "importin alpha 4|importin subunit alpha-4" "karyopherin alpha 3 (importin alpha 4)|karyopherin alpha 3" "Armadillo repeat containing|Importins" "409|596" 1997-03-19 2016-02-01 2016-10-05 3839 ENSG00000102753 OTTHUMG00000016922 uc001vdj.2 D89618 NM_002267 CCDS9421 O00505 "9154134|9435235" MGI:1100863 RGD:1311339 KPNA3 601892 +HGNC:41356 KPNA3-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:6397 KPNA4 karyopherin subunit alpha 4 protein-coding gene gene with protein product Approved 3q25.33 03q25.33 "QIP1|SRP3|IPOA3|MGC12217|MGC26703" importin alpha 3 "karyopherin alpha 4 (importin alpha 3)|karyopherin alpha 4" "Armadillo repeat containing|Importins" "409|596" 1998-08-20 2016-02-01 2016-02-01 3840 ENSG00000186432 OTTHUMG00000159033 uc003fdn.3 AB002533 NM_002268 CCDS3191 O00629 "9168958|9395085" MGI:1100848 RGD:1311483 KPNA4 602970 +HGNC:6398 KPNA5 karyopherin subunit alpha 5 protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "SRP6|IPOA6" importin alpha 6 "karyopherin alpha 5 (importin alpha 6)|karyopherin alpha 5" "Armadillo repeat containing|Importins" "409|596" 1998-08-24 2016-02-01 2016-10-05 3841 ENSG00000196911 OTTHUMG00000015448 uc003pxh.4 AF005361 NM_002269 CCDS5111 O15131 9395085 RGD:1561324 KPNA5 604545 +HGNC:6399 KPNA6 karyopherin subunit alpha 6 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "IPOA7|KPNA7|MGC17918|FLJ11249" importin alpha 7 "karyopherin alpha 6 (importin alpha 7)|karyopherin alpha 6" "Armadillo repeat containing|Importins" "409|596" 1999-12-14 2016-02-01 2016-10-05 23633 ENSG00000025800 OTTHUMG00000004333 uc001bug.4 AF060543 NM_012316 CCDS352 O60684 10523667 MGI:1100836 RGD:1306570 KPNA6 610563 +HGNC:21839 KPNA7 karyopherin subunit alpha 7 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 IPOA8 importin alpha 8 "karyopherin alpha 7 (importin alpha 8)|karyopherin alpha 7" "Armadillo repeat containing|Importins" "409|596" 2009-04-07 2016-02-01 2016-02-01 402569 ENSG00000185467 OTTHUMG00000154412 uc010lft.3 NM_001145715 CCDS47651 A9QM74 MGI:2141165 RGD:1594749 KPNA7 614107 404154 +HGNC:6400 KPNB1 karyopherin subunit beta 1 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "NTF97|IPOB|MGC2155|MGC2156|MGC2157|IMB1|Impnb|IPO1" importin 1 karyopherin (importin) beta 1 "Armadillo repeat containing|Importins" "409|596" 1997-04-21 2016-02-01 2016-02-01 3837 ENSG00000108424 OTTHUMG00000036957 uc002ilt.3 L39793 NM_002265 "CCDS11513|CCDS62228" Q14974 "7615630|7627554" MGI:107532 RGD:2909 KPNB1 602738 +HGNC:31823 KPRP keratinocyte proline rich protein protein-coding gene gene with protein product Approved 1q21.3 01q21.3 C1orf45 "chromosome 1 open reading frame 45|keratinocyte proline-rich protein" 2004-09-16 2006-12-07 2016-01-21 2016-01-21 448834 ENSG00000203786 OTTHUMG00000012402 uc057lai.1 AY960854 NM_001025231 CCDS30862 Q5T749 16297201 MGI:1920981 RGD:1303244 KPRP 613260 +HGNC:6404 KPTN kaptin, actin binding protein protein-coding gene gene with protein product Approved 19q13.32 19q13.32 2E4 kaptin (actin-binding protein) 1999-08-27 2016-06-13 2016-06-13 11133 ENSG00000118162 OTTHUMG00000183443 uc002pgy.4 AF105369 XM_017026226 CCDS42583 Q9Y664 10099934 MGI:1890380 RGD:1310341 KPTN 615620 400629 +HGNC:6407 KRAS KRAS proto-oncogene, GTPase protein-coding gene gene with protein product Approved 12p12.1 12p12.1 KRAS1 KRAS2 "v-Ki-ras2 Kirsten rat sarcoma 2 viral oncogene homolog|v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog|Kirsten rat sarcoma viral oncogene homolog" RAS type GTPase family 389 1988-06-02 2005-01-24 2016-05-10 2016-10-12 3845 ENSG00000133703 OTTHUMG00000171193 uc001rgp.3 BC010502 NM_033360 "CCDS8702|CCDS8703" P01116 MGI:96680 RGD:2981 LRG_344|http://www.lrg-sequence.org/LRG/LRG_344 KRAS 190070 122879 objectId:2824 +HGNC:6406 KRASP1 KRAS proto-oncogene, GTPase pseudogene 1 pseudogene pseudogene Approved 6p12.1 06p12.1 KRAS1P v-Ki-ras1 Kirsten rat sarcoma 1 viral oncogene homolog, processed pseudogene Transcribed pseudogenes with published function 859 2001-06-22 2010-07-21 2016-05-12 2016-09-26 3844 ENSG00000220635 OTTHUMG00000014897 K01912 NG_001154 "6308466|20577206" PGOHUM00000250209 KRASP1 +HGNC:22228 KRBA1 KRAB-A domain containing 1 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 KIAA1862 KRAB A domain containing 1 2006-08-14 2006-08-15 2016-10-05 84626 ENSG00000133619 OTTHUMG00000157886 uc033aph.2 AB058765 NM_032534 "CCDS75674|CCDS78285" A5PL33 MGI:1925077 RGD:1306967 KRBA1 1152 +HGNC:26989 KRBA2 KRAB-A domain containing 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 KRAB A domain containing 2 2006-08-15 2006-08-15 2015-08-26 124751 ENSG00000184619 OTTHUMG00000132864 uc002glf.1 BC024723 NM_213597 "CCDS11141|CCDS76951" Q6ZNG9 12477932 KRBA2 1159 +HGNC:38708 KRBOX1 KRAB box domain containing 1 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 2010-07-29 2010-07-29 2015-08-20 100506243 ENSG00000240747 OTTHUMG00000186062 uc062ish.1 NM_001205272 CCDS54572 C9JBD0 RGD:2321744 KRBOX1 907 +HGNC:42942 KRBOX1-AS1 KRBOX1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.1 03p22.1 FLJ32776 KRBOX1 antisense RNA 1 (non-protein coding) 2011-09-07 2012-08-15 2012-10-12 100506275 ENSG00000206552 OTTHUMG00000156447 uc062ist.1 AK057338 XR_110049 +HGNC:26007 KRBOX4 KRAB box domain containing 4 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 FLJ20344 hypothetical protein FLJ20344 ZNF673 "zinc finger protein 673|zinc finger family member 673" 2005-03-26 2013-01-08 2013-01-08 2014-11-19 55634 ENSG00000147121 OTTHUMG00000021421 uc004dgm.5 NM_017776 "CCDS14267|CCDS48097|CCDS48098" Q5JUW0 11944989 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=KRBOX4 300585 518 +HGNC:28039 KRCC1 lysine rich coiled-coil 1 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 FLJ22333 2006-08-15 2016-06-06 2016-06-06 51315 ENSG00000172086 OTTHUMG00000130315 uc002sso.1 AF208845 NM_016618 CCDS2000 Q9NPI7 12477932 MGI:1889377 RGD:1306495 KRCC1 +HGNC:17550 KREMEN1 kringle containing transmembrane protein 1 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 KRM1 KREMEN kringle containing transmembrane protein 2002-04-22 2002-11-15 2002-11-13 2016-04-25 83999 ENSG00000183762 OTTHUMG00000030987 uc011akm.2 AB059618 XM_011530429 "CCDS13849|CCDS43000" Q96MU8 11267660 MGI:1933988 RGD:620789 KREMEN1 609898 +HGNC:18797 KREMEN2 kringle containing transmembrane protein 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "MGC10791|KRM2" 2002-06-20 2016-10-05 79412 ENSG00000131650 OTTHUMG00000128976 uc002csg.4 BC003533 NM_145347 "CCDS10483|CCDS10484|CCDS58412|CCDS58413" Q8NCW0 12050670 MGI:1920266 RGD:1310795 KREMEN2 609899 +HGNC:25769 KRI1 KRI1 homolog protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ12949 KRI1 homolog (S. cerevisiae) 2007-08-02 2015-07-03 2015-07-03 65095 ENSG00000129347 OTTHUMG00000150343 uc002moy.2 NM_023008 CCDS12242 Q8N9T8 12878157 MGI:2384899 RGD:1588903 KRI1 +HGNC:1573 KRIT1 KRIT1, ankyrin repeat containing protein-coding gene gene with protein product Approved 7q21.2 07q21.2 CAM CCM1 cerebral cavernous malformations 1 "Ankyrin repeat domain containing|FERM domain containing" "403|1293" 1995-06-02 2005-03-17 2005-03-15 2016-10-12 889 ENSG00000001631 OTTHUMG00000131187 uc003ulu.1 AJ294850 XM_011516651 "CCDS5624|CCDS34679" O00522 "7604043|11342228" MGI:1930618 RGD:1305929 LRG_650|http://www.lrg-sequence.org/LRG/LRG_650 KRIT1 604214 122883 +HGNC:5176 KRR1 KRR1, small subunit processome component homolog protein-coding gene gene with protein product Approved 12q21.2 12q21.2 RIP-1 HRB2 "HIV-1 rev binding protein 2|KRR1, small subunit (SSU) processome component, homolog (yeast)" 1999-12-09 2006-05-18 2016-04-14 2016-10-05 11103 ENSG00000111615 OTTHUMG00000169759 uc001sxt.4 U55766 NM_007043 CCDS9012 Q13601 "7505766|11027267|11359931|8675026" MGI:1289274 RGD:1306183 KRR1 612817 +HGNC:39580 KRR1P1 KRR1, small subunit (SSU) processome component, homolog (yeast) pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-03-15 2011-03-15 100422486 ENSG00000237672 OTTHUMG00000016505 NG_024834 PGOHUM00000248314 +HGNC:6412 KRT1 keratin 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 KRT1A EHK1 "epidermolytic hyperkeratosis 1|keratin 1, type II" Keratins, type II 609 1991-09-12 2016-03-09 2016-03-09 3848 ENSG00000167768 OTTHUMG00000169749 uc001sau.1 X69725 NM_006121 CCDS8836 P04264 "2461420|2470667|16831889" MGI:96698 RGD:1359664 KRT1 139350 122887 HGNC:6412 +HGNC:6439 KRT2 keratin 2 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 KRTE epidermal ichthyosis bullosa of Siemens KRT2A "keratin 2A (epidermal ichthyosis bullosa of Siemens)|keratin 2, type II" Keratins, type II 609 1995-05-30 2006-07-17 2016-03-09 2016-03-09 3849 ENSG00000172867 OTTHUMG00000169748 uc001sat.4 NM_000423 CCDS8835 P35908 "7524919|16831889" MGI:96699 RGD:1303297 KRT2 600194 122907 HGNC:6439 +HGNC:6440 KRT3 keratin 3 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "CK3|K3" "keratin, type II cytoskeletal 3|cytokeratin 3" "keratin 3|keratin 3, type II" Keratins, type II 609 1992-12-04 2016-03-09 2016-03-09 3850 ENSG00000186442 OTTHUMG00000169799 uc001say.4 NM_057088 CCDS44895 P12035 "7510223|16831889" KRT3 148043 122911 HGNC:6440 +HGNC:6441 KRT4 keratin 4 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "CK4|K4" "cytokeratin 4|keratin, type II cytoskeletal 4" CYK4 "keratin 4|keratin 4, type II" Keratins, type II 609 2001-06-22 2016-03-09 2016-04-25 3851 ENSG00000170477 OTTHUMG00000169800 uc031qhk.2 NM_002272 CCDS41787 P19013 16831889 MGI:96701 RGD:1359272 KRT4 123940 181135 HGNC:6441 +HGNC:6442 KRT5 keratin 5 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 KRT5A EBS2 "epidermolysis bullosa simplex 2 Dowling-Meara/Kobner/Weber-Cockayne types|keratin 5 (epidermolysis bullosa simplex, Dowling-Meara/Kobner/Weber-Cockayne types)|keratin 5, type II" Keratins, type II 609 1991-09-12 2016-03-09 2016-03-09 3852 ENSG00000186081 OTTHUMG00000169657 uc001san.4 NM_000424 CCDS8830 P13647 "1713141|16831889" MGI:96702 RGD:7499194 KRT5 148040 122913 HGNC:6442 +HGNC:6443 KRT6A keratin 6A protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "CK6C|K6C|CK6D|K6D" "KRT6C|KRT6D" "keratin 6C|keratin 6D|keratin 6A, type II" Keratins, type II 609 1991-09-12 2016-03-09 2016-03-09 3853 ENSG00000205420 OTTHUMG00000169597 uc001sam.4 "BC014152|L42593|L42610" NM_005554 CCDS41786 P02538 "1713141|16831889" "MGI:1100845|MGI:1333768" KRT6A 148041 122917 HGNC:6443 +HGNC:6444 KRT6B keratin 6B protein-coding gene gene with protein product Approved 12q13.13 12q13.13 KRTL1 "keratin-like 1 (a type II keratin sequence)|keratin 6B, type II" Keratins, type II 609 1991-09-12 2016-03-09 2016-03-09 3854 ENSG00000185479 OTTHUMG00000169593 uc001sak.3 BC034535 NM_005555 CCDS8828 P04259 "1713141|16831889" "MGI:1100845|MGI:1333768" KRT6B 148042 122925 HGNC:6444 +HGNC:20406 KRT6C keratin 6C protein-coding gene gene with protein product Approved 12q13.13 12q13.13 KRT6E "keratin 6E|keratin 6C, type II" Keratins, type II 609 2003-02-04 2006-07-17 2016-03-09 2016-03-09 286887 ENSG00000170465 OTTHUMG00000169596 uc001sal.4 L42611 NM_173086 CCDS8829 P48668 "7543104|16831889" "MGI:1100845|MGI:1333768" RGD:1565564 KRT6C 612315 225368 HGNC:20406 +HGNC:6445 KRT7 keratin 7 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "K7|CK7|K2C7|SCL" "keratin, type II cytoskeletal 7|cytokeratin 7|sarcolectin|keratin, 55K type II cytoskeletal" keratin 7, type II Keratins, type II 609 1991-09-12 2016-03-09 2016-03-09 3855 ENSG00000135480 OTTHUMG00000169580 uc001saa.2 NM_005556 CCDS8822 P08729 "1713141|16831889" MGI:96704 RGD:1310865 KRT7 148059 HGNC:6445 +HGNC:6446 KRT8 keratin 8 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "CARD2|K8|CK8|CYK8|K2C8|KO" keratin 8, type II Keratins, type II 609 1988-08-12 2016-03-09 2016-03-09 3856 ENSG00000170421 OTTHUMG00000169881 uc009zmm.3 BC000654 NM_002273 "CCDS8841|CCDS58234" P05787 "2434381|1705144|16831889" MGI:96705 RGD:2984 KRT8 148060 HGNC:6446 +HGNC:20281 KRT8P1 keratin 8 pseudogene 1 pseudogene pseudogene Approved 14q21.1 14q21.1 2003-01-17 2014-11-19 338017 ENSG00000258948 OTTHUMG00000170692 NG_007444 PGOHUM00000248140 +HGNC:20282 KRT8P2 keratin 8 pseudogene 2 pseudogene pseudogene Approved 14q21.2 14q21.2 OTTHUMG00000135122 2003-01-17 2014-11-19 390472 ENSG00000258828 OTTHUMG00000170707 NG_029068 PGOHUM00000247783 +HGNC:31056 KRT8P3 keratin 8 pseudogene 3 pseudogene pseudogene Approved 8q12.3 08q12.3 2004-02-03 2012-10-16 728638 ENSG00000254285 OTTHUMG00000164401 NG_006536 PGOHUM00000261521 +HGNC:31057 KRT8P4 keratin 8 pseudogene 4 pseudogene pseudogene Approved 8q21.3 08q21.3 2004-02-03 2013-09-05 100509857 ENSG00000248231 OTTHUMG00000160489 NG_042265 PGOHUM00000267749 +HGNC:31094 KRT8P5 keratin 8 pseudogene 5 pseudogene pseudogene Approved 18q12.3 18q12.3 2004-02-03 2014-11-18 342732 ENSG00000267573 OTTHUMG00000178346 NT_010966 PGOHUM00000261252 +HGNC:33360 KRT8P6 keratin 8 pseudogene 6 pseudogene pseudogene Approved Xq26.3 Xq26.3 2007-03-14 2014-11-18 392552 ENSG00000214930 OTTHUMG00000022528 NG_021118 PGOHUM00000241575 +HGNC:33361 KRT8P7 keratin 8 pseudogene 7 pseudogene pseudogene Approved 11q23.3 11q23.3 2007-03-14 2014-11-19 729131 ENSG00000230716 OTTHUMG00000166175 NT_033899 PGOHUM00000261118 +HGNC:33362 KRT8P8 keratin 8 pseudogene 8 pseudogene pseudogene Approved Xq28 Xq28 2007-03-14 2011-04-06 402429 ENSG00000223940 OTTHUMG00000024182 NT_011726 PGOHUM00000242083 +HGNC:33363 KRT8P9 keratin 8 pseudogene 9 pseudogene pseudogene Approved 15q23 15q23 2007-03-15 2007-03-15 2012-10-16 390601 ENSG00000259470 OTTHUMG00000172183 NT_010194 PGOHUM00000261191 +HGNC:33364 KRT8P10 keratin 8 pseudogene 10 pseudogene pseudogene Approved 2q32.1 02q32.1 2007-03-15 2014-11-19 344320 ENSG00000231203 OTTHUMG00000154237 NT_005403 PGOHUM00000261347 +HGNC:31058 KRT8P11 keratin 8 pseudogene 11 pseudogene pseudogene Approved 9q22.33 09q22.33 RP11-13B9.3 KRT8L1 keratin 8-like 1 2004-05-27 2007-03-14 2007-03-14 2012-10-03 347265 ENSG00000255815 OTTHUMG00000020356 NT_008470 KRT8P11 +HGNC:28057 KRT8P12 keratin 8 pseudogene 12 pseudogene pseudogene Approved 3q25.33 03q25.33 KRT8L2 keratin 8-like 2 2005-04-22 2007-03-14 2007-03-14 2016-10-05 90133 ENSG00000229320 OTTHUMG00000159030 NT_005612 PGOHUM00000267739 +HGNC:33365 KRT8P13 keratin 8 pseudogene 13 pseudogene pseudogene Approved 3q26.2 03q26.2 2007-03-15 2014-11-19 730023 ENSG00000241416 OTTHUMG00000158860 NT_005612 PGOHUM00000261378 +HGNC:33366 KRT8P14 keratin 8 pseudogene 14 pseudogene pseudogene Approved Xp11.3 Xp11.3 2007-03-15 2014-11-19 347333 ENSG00000214282 OTTHUMG00000021407 NT_079573 PGOHUM00000261801 +HGNC:33367 KRT8P15 keratin 8 pseudogene 15 pseudogene pseudogene Approved 2q33.2 02q33.2 2007-03-15 2016-10-05 645834 ENSG00000233579 OTTHUMG00000154529 NT_005403 PGOHUM00000261349 +HGNC:33368 KRT8P16 keratin 8 pseudogene 16 pseudogene pseudogene Approved 10p14 10p14 2007-03-15 2012-10-10 220959 NG_006099 +HGNC:33369 KRT8P17 keratin 8 pseudogene 17 pseudogene pseudogene Approved Xp11.21 Xp11.21 2007-03-15 2011-04-06 392479 ENSG00000235124 OTTHUMG00000021690 NT_011630 PGOHUM00000241802 +HGNC:33370 KRT8P18 keratin 8 pseudogene 18 pseudogene pseudogene Approved 3p22.3 03p22.3 2007-03-15 2014-11-19 442078 ENSG00000228767 OTTHUMG00000155763 NT_022517 PGOHUM00000261367 +HGNC:33371 KRT8P19 keratin 8 pseudogene 19 pseudogene pseudogene Approved 12q14.1 12q14.1 2007-03-15 2014-11-19 644998 ENSG00000257528 OTTHUMG00000170204 NG_009706 PGOHUM00000261144 +HGNC:33372 KRT8P20 keratin 8 pseudogene 20 pseudogene pseudogene Approved 7p14.1 07p14.1 2007-03-15 2014-11-19 441218 ENSG00000227404 OTTHUMG00000155103 NT_007819 PGOHUM00000261482 +HGNC:33373 KRT8P21 keratin 8 pseudogene 21 pseudogene pseudogene Approved 1p31.1 01p31.1 2007-03-15 2014-11-18 126811 ENSG00000229636 OTTHUMG00000009547 NG_009686 PGOHUM00000261307 +HGNC:33374 KRT8P22 keratin 8 pseudogene 22 pseudogene pseudogene Approved 16q23.1 16q23.1 2007-03-15 2014-11-19 342419 ENSG00000260731 OTTHUMG00000176849 NT_010498 PGOHUM00000261212 +HGNC:33375 KRT8P23 keratin 8 pseudogene 23 pseudogene pseudogene Approved 15q24.3 15q24.3 2007-03-15 2012-10-16 390610 ENSG00000259565 OTTHUMG00000172602 NT_010194 PGOHUM00000261176 +HGNC:33376 KRT8P24 keratin 8 pseudogene 24 pseudogene pseudogene Approved 15q21.1 15q21.1 2007-03-15 2012-10-16 729344 ENSG00000259500 OTTHUMG00000172162 NT_010194 PGOHUM00000261189 +HGNC:33377 KRT8P25 keratin 8 pseudogene 25 pseudogene pseudogene Approved 3p11.2 03p11.2 2007-03-15 2011-04-06 402134 ENSG00000239829 OTTHUMG00000158986 NT_022459 PGOHUM00000238092 +HGNC:33378 KRT8P26 keratin 8 pseudogene 26 pseudogene pseudogene Approved 11q13.1 11q13.1 2007-03-15 2014-11-19 390211 ENSG00000214659 OTTHUMG00000166591 NT_033903 PGOHUM00000264196 +HGNC:33379 KRT8P27 keratin 8 pseudogene 27 pseudogene pseudogene Approved Xq11.2 Xq11.2 2007-03-15 2007-03-15 2011-04-06 442455 ENSG00000226502 OTTHUMG00000021709 NT_011669 PGOHUM00000241813 +HGNC:33380 KRT8P28 keratin 8 pseudogene 28 pseudogene pseudogene Approved 1q21.3 01q21.3 2007-03-15 2014-11-19 391099 ENSG00000223810 OTTHUMG00000013050 NT_004487 PGOHUM00000244270 +HGNC:33381 KRT8P29 keratin 8 pseudogene 29 pseudogene pseudogene Approved 1q32.1 01q32.1 2007-03-15 2013-09-05 391155 ENSG00000236430 OTTHUMG00000036051 NT_004487 PGOHUM00000267732 +HGNC:33382 KRT8P30 keratin 8 pseudogene 30 pseudogene pseudogene Approved 2q35 02q35 2007-03-15 2011-04-06 391485 ENSG00000224928 OTTHUMG00000154667 NT_005403 PGOHUM00000240526 +HGNC:39865 KRT8P31 keratin 8 pseudogene 31 pseudogene pseudogene Approved 5q12.1 05q12.1 2011-04-06 2014-11-19 728167 ENSG00000250148 OTTHUMG00000162434 NG_021853 PGOHUM00000235233 +HGNC:39866 KRT8P32 keratin 8 pseudogene 32 pseudogene pseudogene Approved 5q15 05q15 2011-04-06 2014-11-19 100289133 ENSG00000250221 OTTHUMG00000162712 NG_021858 PGOHUM00000261400 +HGNC:39867 KRT8P33 keratin 8 pseudogene 33 pseudogene pseudogene Approved 5q23.2 05q23.2 2011-04-06 2014-11-19 100418737 ENSG00000250539 OTTHUMG00000162977 NG_024625 PGOHUM00000261401 +HGNC:39868 KRT8P34 keratin 8 pseudogene 34 pseudogene pseudogene Approved 17q21.1 17q21.1 2011-04-06 2016-10-05 100418811 ENSG00000264663 OTTHUMG00000179518 NG_026180 PGOHUM00000261232 +HGNC:39869 KRT8P35 keratin 8 pseudogene 35 pseudogene pseudogene Approved 3p14.2 03p14.2 2011-04-06 2014-11-19 100418747 ENSG00000242841 OTTHUMG00000158702 NG_025586 PGOHUM00000237641 +HGNC:39870 KRT8P36 keratin 8 pseudogene 36 pseudogene pseudogene Approved 3q22.3 03q22.3 2011-04-06 2014-11-18 100418748 ENSG00000240668 OTTHUMG00000159822 NG_025632 PGOHUM00000237786 +HGNC:39871 KRT8P37 keratin 8 pseudogene 37 pseudogene pseudogene Approved 10p14 10p14 2011-04-06 2014-11-19 100287325 ENSG00000213771 OTTHUMG00000017647 NG_022138 PGOHUM00000261079 +HGNC:39872 KRT8P38 keratin 8 pseudogene 38 pseudogene pseudogene Approved 10q23.31 10q23.31 2011-04-06 2014-11-19 100418799 ENSG00000226358 OTTHUMG00000018697 NG_025532 PGOHUM00000264187 +HGNC:39873 KRT8P39 keratin 8 pseudogene 39 pseudogene pseudogene Approved 12q15 12q15 2011-04-06 2014-11-19 100418781 ENSG00000233560 OTTHUMG00000169266 NG_024106 PGOHUM00000261146 +HGNC:39874 KRT8P40 keratin 8 pseudogene 40 pseudogene pseudogene Approved 2q31.2 02q31.2 2011-04-06 2014-11-18 100418728 ENSG00000213069 OTTHUMG00000154099 NG_023748 PGOHUM00000241029 +HGNC:39875 KRT8P41 keratin 8 pseudogene 41 pseudogene pseudogene Approved 11p15.4 11p15.4 2011-04-06 2014-11-19 283102 ENSG00000213538 OTTHUMG00000165715 NR_027713 PGOHUM00000261120 +HGNC:39876 KRT8P42 keratin 8 pseudogene 42 pseudogene pseudogene Approved 6q23.2 06q23.2 2011-04-06 2014-11-18 100418750 ENSG00000220378 OTTHUMG00000015612 NG_025872 PGOHUM00000261425 +HGNC:39877 KRT8P43 keratin 8 pseudogene 43 pseudogene pseudogene Approved 6p22.3 06p22.3 2011-04-06 2014-11-19 100289319 ENSG00000218186 OTTHUMG00000014357 NG_016206 PGOHUM00000261428 +HGNC:39878 KRT8P44 keratin 8 pseudogene 44 pseudogene pseudogene Approved 6q26 06q26 2011-04-06 2014-11-19 100129958 ENSG00000227913 OTTHUMG00000015969 NG_008289 PGOHUM00000243844 +HGNC:39879 KRT8P45 keratin 8 pseudogene 45 pseudogene pseudogene Approved 1q23.1 01q23.1 2011-04-06 2014-11-19 149501 ENSG00000224520 OTTHUMG00000041329 NG_022808 PGOHUM00000261312 +HGNC:39880 KRT8P46 keratin 8 pseudogene 46 pseudogene pseudogene Approved 4q24 04q24 2011-04-06 2014-11-19 100418744 ENSG00000248971 OTTHUMG00000161079 NG_025145 PGOHUM00000261380 +HGNC:44461 KRT8P47 keratin 8 pseudogene 47 pseudogene pseudogene Approved 1p34.1 01p34.1 2012-10-10 2013-06-25 644743 ENSG00000271647 OTTHUMG00000184285 NG_022720 PGOHUM00000243991 +HGNC:48344 KRT8P48 keratin 8 pseudogene 48 pseudogene pseudogene Approved 5q32 05q32 2013-05-09 2013-05-09 100887067 ENSG00000248568 OTTHUMG00000163409 NG_032709 PGOHUM00000235417 +HGNC:48345 KRT8P49 keratin 8 pseudogene 49 pseudogene pseudogene Approved 11p15.4 11p15.4 2013-05-09 2013-06-25 643447 ENSG00000271602 OTTHUMG00000184842 NG_021770 PGOHUM00000261105 +HGNC:48346 KRT8P50 keratin 8 pseudogene 50 pseudogene pseudogene Approved 15q15.2 15q15.2 2013-05-09 2013-05-09 102724430 ENSG00000260799 OTTHUMG00000176056 NG_044943 PGOHUM00000262903 +HGNC:48883 KRT8P51 keratin 8 pseudogene 51 pseudogene pseudogene Approved 7q33 07q33 2013-06-25 2013-06-25 106480676 ENSG00000223657 OTTHUMG00000155656 NG_043203 PGOHUM00000233006 +HGNC:6447 KRT9 keratin 9 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "EPPK|K9|CK-9" "cytokeratin 9|type I cytoskeletal 9|epidermolytic palmoplantar keratoderma" keratin 9, type I Keratins, type I 608 1994-05-12 2016-03-09 2016-03-09 3857 ENSG00000171403 OTTHUMG00000133599 uc002hxe.5 NM_000226 CCDS32654 P35527 "7512862|16831889" MGI:96696 RGD:628785 Zhejiang University Center for Genetic and Genomic Medicine|http://www.china-hvp.org/LOVD/home.php?select_db=KRT9 KRT9 607606 122945 HGNC:6447 +HGNC:6413 KRT10 keratin 10 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "K10|CK10" "cytokeratin 10|epidermolytic hyperkeratosis" KPP "keratosis palmaris et plantaris|keratin 10, type I" Keratins, type I 608 1988-08-12 2016-03-09 2016-03-09 3858 ENSG00000186395 OTTHUMG00000133368 uc002hvi.4 J04029 NM_000421 CCDS11377 P13645 "2461420|16831889" MGI:96685 RGD:1359092 KRT10 148080 122891 HGNC:6413 +HGNC:6414 KRT12 keratin 12 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 K12 Meesmann corneal dystrophy keratin 12, type I Keratins, type I 608 1997-07-22 2016-03-09 2016-03-09 3859 ENSG00000187242 OTTHUMG00000133369 uc002hvk.3 NM_000223 CCDS11378 Q99456 "9171831|16831889" MGI:96687 RGD:1304805 KRT12 601687 122894 HGNC:6414 +HGNC:6415 KRT13 keratin 13 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "K13|CK13|MGC3781|MGC161462" "keratin, type I cytoskeletal 13|cytokeratin 13" keratin 13, type I Keratins, type I 608 1990-11-05 2016-03-09 2016-03-09 3860 ENSG00000171401 OTTHUMG00000133434 uc002hwu.2 NM_153490 "CCDS11396|CCDS11397" P13646 16831889 MGI:101925 RGD:1302937 KRT13 148065 181140 HGNC:6415 +HGNC:6416 KRT14 keratin 14 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 epidermolysis bullosa simplex, Dowling-Meara, Koebner "EBS3|EBS4" "keratin 14 (epidermolysis bullosa simplex, Dowling-Meara, Koebner)|keratin 14, type I" Keratins, type I 608 1992-04-09 2016-03-09 2016-03-09 3861 ENSG00000186847 OTTHUMG00000133426 uc002hxf.3 BC002690 NM_000526 CCDS11400 P02533 "1717157|16831889" MGI:96688 RGD:1307463 KRT14 148066 122897 HGNC:6416 +HGNC:6417 KRT14L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-03-20 +HGNC:6418 KRT14L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-03-20 +HGNC:6419 KRT14L3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-03-20 +HGNC:6421 KRT15 keratin 15 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "K15|CK15|K1CO" "keratin-15, basic|keratin-15, beta|type I cytoskeletal 15|cytokeratin 15" keratin 15, type I Keratins, type I 608 1988-08-12 2016-03-09 2016-03-09 3866 ENSG00000171346 OTTHUMG00000133435 uc002hwy.4 NM_002275 CCDS11398 P19012 16831889 MGI:96689 RGD:1303044 KRT15 148030 HGNC:6421 +HGNC:6422 KRT15L entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-03-20 +HGNC:6423 KRT16 keratin 16 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 NEPPK focal non-epidermolytic palmoplantar keratoderma keratin 16, type I Keratins, type I 608 1992-12-14 2016-03-09 2016-03-09 3868 ENSG00000186832 OTTHUMG00000133495 uc002hxg.5 S79867 NM_005557 CCDS11401 P08779 "2451124|16831889" MGI:96690 RGD:1590901 KRT16 148067 122901 HGNC:6423 +HGNC:6424 KRT16L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-07-19 +HGNC:6425 KRT16L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-07-19 +HGNC:6420 KRT16P1 keratin 16 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 KRT14P keratin 14 pseudogene 1988-08-12 2010-02-25 2010-02-25 2014-11-18 729252 ENSG00000214856 OTTHUMG00000059249 NG_007001 PGOHUM00000237255 +HGNC:6426 KRT16P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-02-25 +HGNC:37807 KRT16P2 keratin 16 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2010-02-25 2014-11-19 400578 ENSG00000227300 OTTHUMG00000059177 NR_029392 PGOHUM00000236939 +HGNC:37808 KRT16P3 keratin 16 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 MGC102966 KERSMCR cytokeratin, Smith Magenis syndrome chromosome region 2010-02-25 2014-11-19 644945 ENSG00000214822 OTTHUMG00000130724 BC110641 NR_029393 PGOHUM00000236964 +HGNC:37809 KRT16P4 keratin 16 pseudogene 4 pseudogene pseudogene Approved 17p11.2 17p11.2 2010-02-25 2014-11-19 339244 ENSG00000229526 OTTHUMG00000130551 NG_002779 11997339 PGOHUM00000237256 +HGNC:37810 KRT16P5 keratin 16 pseudogene 5 pseudogene pseudogene Approved 17p11.2 17p11.2 2010-02-25 2016-10-05 353196 ENSG00000230088 OTTHUMG00000130721 NG_002782 11997339 PGOHUM00000236963 +HGNC:50719 KRT16P6 keratin 16 pseudogene 6 pseudogene pseudogene Approved 17p11.2 17p11.2 2014-06-12 2014-06-12 353194 ENSG00000226145 OTTHUMG00000059171 NG_002781 PGOHUM00000236938 +HGNC:6427 KRT17 keratin 17 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 PCHC1 keratin 17, type I Keratins, type I 608 1993-10-18 2016-03-09 2016-03-09 3872 ENSG00000128422 OTTHUMG00000133505 uc002hxh.3 X62571 NM_000422 CCDS11402 Q04695 "7539673|1281771|16831889" MGI:96691 RGD:1303181 KRT17 148069 122904 HGNC:6427 +HGNC:6428 KRT17P1 keratin 17 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 1993-10-18 2014-11-19 147228 ENSG00000131885 OTTHUMG00000059175 NG_002775 1281771 KRT17P1 PGOHUM00000263409 +HGNC:6429 KRT17P2 keratin 17 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 1993-10-18 2013-06-25 339241 ENSG00000186831 OTTHUMG00000059248 NG_002778 1281771 PGOHUM00000263428 +HGNC:33697 KRT17P3 keratin 17 pseudogene 3 pseudogene pseudogene Approved 17q11.2 17q11.2 2007-11-13 2013-06-25 729682 ENSG00000231870 OTTHUMG00000132805 NT_010799 PGOHUM00000237017 +HGNC:50722 KRT17P4 keratin 17 pseudogene 4 pseudogene pseudogene Approved 17p11.2 17p11.2 2014-06-12 2014-06-12 339186 ENSG00000205312 OTTHUMG00000059174 NG_002777 PGOHUM00000236940 +HGNC:50723 KRT17P5 keratin 17 pseudogene 5 pseudogene pseudogene Approved 17p11.2 17p11.2 2014-06-12 2015-01-30 339240 ENSG00000205266 OTTHUMG00000059247 NR_001443 PGOHUM00000237254 +HGNC:50724 KRT17P6 keratin 17 pseudogene 6 pseudogene pseudogene Approved 17p11.2 17p11.2 2014-06-12 2014-06-12 284196 ENSG00000231645 OTTHUMG00000130723 NG_002776 PGOHUM00000263411 +HGNC:50725 KRT17P7 keratin 17 pseudogene 7 pseudogene pseudogene Approved 17p11.2 17p11.2 2014-06-12 2014-06-12 339258 ENSG00000205215 OTTHUMG00000130726 NG_002780 PGOHUM00000236966 +HGNC:50726 KRT17P8 keratin 17 pseudogene 8 pseudogene pseudogene Approved 12p13.31 12p13.31 2014-06-12 2014-06-12 100130074 ENSG00000256937 OTTHUMG00000168327 NG_021703 PGOHUM00000239656 +HGNC:6430 KRT18 keratin 18 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 keratin 18, type I Keratins, type I 608 1988-08-12 2016-03-09 2016-10-05 3875 ENSG00000111057 OTTHUMG00000169882 uc001sbe.4 NM_199187 CCDS31809 P05783 "1705144|16831889" MGI:96692 RGD:619935 KRT18 148070 HGNC:6430 +HGNC:6434 KRT18P1 keratin 18 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 dJ25J6.3 1998-02-03 2013-06-25 3879 ENSG00000228666 OTTHUMG00000031205 NG_001024 8824804 PGOHUM00000243109 +HGNC:6435 KRT18P2 keratin 18 pseudogene 2 pseudogene pseudogene Approved 21q21.1 21q21.1 OTTHUMG00000078062 2000-05-23 2014-11-19 54044 ENSG00000234439 OTTHUMG00000078062 NG_000918 PGOHUM00000239045 +HGNC:16540 KRT18P3 keratin 18 pseudogene 3 pseudogene pseudogene Approved 20p11.21 20p11.21 "bA359G22.1|OTTHUMG00000032046" 2001-09-17 2014-11-19 170527 ENSG00000215553 OTTHUMG00000032046 AL158175 NG_001043 PGOHUM00000247466 +HGNC:16604 KRT18P4 keratin 18 pseudogene 4 pseudogene pseudogene Approved 20q13.13 20q13.13 "dJ963K23.1|OTTHUMG00000032705" 2001-09-17 2014-11-19 391256 ENSG00000229222 OTTHUMG00000032705 AL031685 NT_011362 PGOHUM00000247670 +HGNC:19259 KRT18P5 keratin 18 pseudogene 5 pseudogene pseudogene Approved 22q11.21 22q11.21 2002-09-18 2014-11-18 728300 ENSG00000236670 OTTHUMG00000150808 NT_011520 PGOHUM00000246241 +HGNC:20280 KRT18P6 keratin 18 pseudogene 6 pseudogene pseudogene Approved 14q13.2 14q13.2 2003-01-17 2014-11-19 122592 ENSG00000258783 OTTHUMG00000171008 NG_007005 PGOHUM00000247770 +HGNC:20283 KRT18P7 keratin 18 pseudogene 7 pseudogene pseudogene Approved 14q24.2 14q24.2 2003-01-17 2014-11-19 100418877 ENSG00000258951 OTTHUMG00000171331 NG_027387 PGOHUM00000248221 +HGNC:31093 KRT18P8 keratin 18 pseudogene 8 pseudogene pseudogene Approved 18p11.22 18p11.22 2004-05-25 2014-11-19 125242 ENSG00000264644 OTTHUMG00000178672 NT_010859 PGOHUM00000234850 +HGNC:17767 KRT18P9 keratin 18 pseudogene 9 pseudogene pseudogene Approved 6p21.31 06p21.31 bA513I15.2 2004-03-26 2014-11-19 442205 ENSG00000271231 OTTHUMG00000184543 NT_007592 PGOHUM00000243597 +HGNC:23962 KRT18P10 keratin 18 pseudogene 10 pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-05-25 2014-11-19 360019 ENSG00000214207 OTTHUMG00000035193 NG_002937 12815422 PGOHUM00000261828 +HGNC:6431 KRT18P11 keratin 18 pseudogene 11 pseudogene pseudogene Approved Xq21.31 Xq21.31 KRT18L1 keratin 18-like 1 1989-05-11 2007-03-15 2007-03-15 2013-06-25 3876 ENSG00000215089 OTTHUMG00000021966 NG_005219 PGOHUM00000261814 +HGNC:33410 KRT18P12 keratin 18 pseudogene 12 pseudogene pseudogene Approved 1q41 01q41 2007-03-19 2014-11-19 643471 ENSG00000215819 OTTHUMG00000037015 NT_021877 PGOHUM00000245204 +HGNC:6432 KRT18P13 keratin 18 pseudogene 13 pseudogene pseudogene Approved 9q22.33 09q22.33 KRT18L3 keratin 18-like 3 1989-05-11 2007-03-15 2007-03-15 2014-11-19 392371 ENSG00000214417 OTTHUMG00000020331 NT_008470 PGOHUM00000236730 +HGNC:6433 KRT18P14 keratin 18 pseudogene 14 pseudogene pseudogene Approved 11p13 11p13 KRT18L4 keratin 18-like 4 1989-05-11 2007-03-15 2007-03-15 2013-06-25 119722 ENSG00000186082 OTTHUMG00000166330 NT_009237 PGOHUM00000257807 +HGNC:32449 KRT18P15 keratin 18 pseudogene 15 pseudogene pseudogene Approved 3p22.3 03p22.3 KRT18L5 keratin 18-like 5 2006-01-09 2007-03-15 2007-03-15 2014-11-19 729211 ENSG00000234737 OTTHUMG00000155858 NT_022517 PGOHUM00000237982 +HGNC:33384 KRT18P16 keratin 18 pseudogene 16 pseudogene pseudogene Approved 5q23.2 05q23.2 2007-03-19 2014-11-19 391827 ENSG00000235275 OTTHUMG00000162976 NT_034772 PGOHUM00000235747 +HGNC:33385 KRT18P17 keratin 18 pseudogene 17 pseudogene pseudogene Approved 3p25.2 03p25.2 2007-03-19 2016-10-05 344866 ENSG00000213943 OTTHUMG00000155395 NT_022517 PGOHUM00000261366 +HGNC:33386 KRT18P18 keratin 18 pseudogene 18 pseudogene pseudogene Approved 16q22.2 16q22.2 2007-03-19 2014-11-19 342374 ENSG00000261764 OTTHUMG00000173050 NT_010498 PGOHUM00000249169 +HGNC:33387 KRT18P19 keratin 18 pseudogene 19 pseudogene pseudogene Approved 2q32.2 02q32.2 2007-03-19 2014-11-19 339781 ENSG00000213601 OTTHUMG00000154302 NT_005403 PGOHUM00000240457 +HGNC:33388 KRT18P20 keratin 18 pseudogene 20 pseudogene pseudogene Approved 12q23.3 12q23.3 2007-03-19 2013-06-25 121054 ENSG00000257758 OTTHUMG00000169821 NT_019546 PGOHUM00000258643 +HGNC:33389 KRT18P21 keratin 18 pseudogene 21 pseudogene pseudogene Approved 4q26 04q26 2007-03-19 2014-11-18 132391 ENSG00000250363 OTTHUMG00000161073 NT_016354 PGOHUM00000246043 +HGNC:33390 KRT18P22 keratin 18 pseudogene 22 pseudogene pseudogene Approved 6q22.1 06q22.1 2007-03-19 2014-11-18 442252 ENSG00000218153 OTTHUMG00000015437 NT_025741 PGOHUM00000243341 +HGNC:33392 KRT18P23 keratin 18 pseudogene 23 pseudogene pseudogene Approved 22q13.31 22q13.31 2007-03-19 2014-11-19 642448 ENSG00000215333 OTTHUMG00000150459 NT_011523 PGOHUM00000246605 +HGNC:33393 KRT18P24 keratin 18 pseudogene 24 pseudogene pseudogene Approved 9q21.31 09q21.31 2007-03-19 2013-06-25 340460 ENSG00000226234 OTTHUMG00000020068 NT_023935 PGOHUM00000236223 +HGNC:33394 KRT18P25 keratin 18 pseudogene 25 pseudogene pseudogene Approved 4p14 04p14 2007-03-19 2014-11-19 391647 ENSG00000249064 OTTHUMG00000160583 NT_016297 PGOHUM00000245885 +HGNC:33395 KRT18P26 keratin 18 pseudogene 26 pseudogene pseudogene Approved 2p13.1 02p13.1 2007-03-19 2013-08-14 100418770 ENSG00000229798 OTTHUMG00000152933 NT_022184 PGOHUM00000240095 +HGNC:33396 KRT18P27 keratin 18 pseudogene 27 pseudogene pseudogene Approved 13q31.3 13q31.3 2007-03-19 2010-07-22 2014-11-18 390418 ENSG00000224419 OTTHUMG00000017183 NT_009952 PGOHUM00000248662 +HGNC:33397 KRT18P28 keratin 18 pseudogene 28 pseudogene pseudogene Approved 1q25.3 01q25.3 2007-03-19 2014-11-19 343326 ENSG00000176855 OTTHUMG00000035417 NT_004487 PGOHUM00000244364 +HGNC:33398 KRT18P29 keratin 18 pseudogene 29 pseudogene pseudogene Approved 2q31.3 02q31.3 2007-03-19 2014-11-19 729050 ENSG00000213958 OTTHUMG00000154327 NT_005403 PGOHUM00000240447 +HGNC:33399 KRT18P30 keratin 18 pseudogene 30 pseudogene pseudogene Approved 6q14.3 06q14.3 2007-03-19 2007-03-19 643858 NT_007299 +HGNC:33400 KRT18P31 keratin 18 pseudogene 31 pseudogene pseudogene Approved 5p13.2 05p13.2 2007-03-19 2014-11-19 646723 ENSG00000249850 OTTHUMG00000162026 NT_006576 PGOHUM00000235561 +HGNC:33401 KRT18P32 keratin 18 pseudogene 32 pseudogene pseudogene Approved 1q43 01q43 2007-03-19 2014-11-19 391179 ENSG00000215149 OTTHUMG00000039531 NT_004836 PGOHUM00000245268 +HGNC:33402 KRT18P33 keratin 18 pseudogene 33 pseudogene pseudogene Approved 2p14 02p14 2007-03-19 2013-06-25 647162 ENSG00000214533 OTTHUMG00000152796 NT_022184 PGOHUM00000261354 +HGNC:33403 KRT18P34 keratin 18 pseudogene 34 pseudogene pseudogene Approved 3q25.31 03q25.31 2007-03-19 2016-10-05 391589 ENSG00000244515 OTTHUMG00000158716 NT_005612 PGOHUM00000237836 +HGNC:33404 KRT18P35 keratin 18 pseudogene 35 pseudogene pseudogene Approved 3q23 03q23 2007-03-19 2013-06-25 391584 ENSG00000215606 OTTHUMG00000160143 NT_005612 PGOHUM00000237794 +HGNC:33405 KRT18P36 keratin 18 pseudogene 36 pseudogene pseudogene Approved 9p21.1 09p21.1 2007-03-19 2014-11-19 442406 ENSG00000226246 OTTHUMG00000019730 NT_008413 PGOHUM00000236003 +HGNC:33406 KRT18P37 keratin 18 pseudogene 37 pseudogene pseudogene Approved 8p11.21 08p11.21 2007-03-19 2014-11-19 392214 ENSG00000253943 OTTHUMG00000164078 NT_007995 PGOHUM00000249630 +HGNC:33407 KRT18P38 keratin 18 pseudogene 38 pseudogene pseudogene Approved 6p22.3 06p22.3 2007-03-19 2014-11-19 441133 ENSG00000214012 OTTHUMG00000014327 NT_007592 PGOHUM00000243500 +HGNC:33408 KRT18P39 keratin 18 pseudogene 39 pseudogene pseudogene Approved 2q33.2 02q33.2 2007-03-19 2013-06-25 344462 ENSG00000224791 OTTHUMG00000154623 NT_005403 PGOHUM00000240495 +HGNC:33409 KRT18P40 keratin 18 pseudogene 40 pseudogene pseudogene Approved 19p12 19p12 2007-03-19 2015-07-31 390904 ENSG00000269012 OTTHUMG00000189492 NT_011295 PGOHUM00000295267 +HGNC:33411 KRT18P41 keratin 18 pseudogene 41 pseudogene pseudogene Approved 5q35.1 05q35.1 2007-03-19 2014-11-19 345430 ENSG00000253219 OTTHUMG00000163085 NT_023133 PGOHUM00000235451 +HGNC:33412 KRT18P42 keratin 18 pseudogene 42 pseudogene pseudogene Approved 5q21.3 05q21.3 2007-03-19 2014-11-19 391819 ENSG00000214794 OTTHUMG00000162835 NT_034772 PGOHUM00000235727 +HGNC:33413 KRT18P43 keratin 18 pseudogene 43 pseudogene pseudogene Approved 3q26.2 03q26.2 2007-03-19 2014-11-19 151825 ENSG00000240128 OTTHUMG00000158732 NT_005612 PGOHUM00000237857 +HGNC:33414 KRT18P44 keratin 18 pseudogene 44 pseudogene pseudogene Approved Xq25 Xq25 2007-03-19 2007-03-19 2013-06-25 139748 ENSG00000218728 OTTHUMG00000022366 NT_011786 PGOHUM00000242005 +HGNC:33415 KRT18P45 keratin 18 pseudogene 45 pseudogene pseudogene Approved 5q14.1 05q14.1 2007-03-19 2014-11-19 391803 ENSG00000249438 OTTHUMG00000162513 NT_006713 PGOHUM00000235675 +HGNC:33416 KRT18P46 keratin 18 pseudogene 46 pseudogene pseudogene Approved 2q24.2 02q24.2 2007-03-19 2013-06-25 391458 ENSG00000235716 OTTHUMG00000154324 NT_005403 PGOHUM00000241003 +HGNC:33417 KRT18P47 keratin 18 pseudogene 47 pseudogene pseudogene Approved 15q26.1 15q26.1 2007-03-19 2013-06-25 390634 ENSG00000259489 OTTHUMG00000171974 NT_010274 PGOHUM00000247262 +HGNC:33418 KRT18P48 keratin 18 pseudogene 48 pseudogene pseudogene Approved Xq28 Xq28 2007-03-19 2013-06-25 340598 ENSG00000217889 OTTHUMG00000024199 NT_011726 PGOHUM00000260932 +HGNC:33419 KRT18P49 keratin 18 pseudogene 49 pseudogene pseudogene Approved Xq22.3 Xq22.3 2007-03-19 2014-11-19 392516 ENSG00000214720 OTTHUMG00000022163 NT_011651 PGOHUM00000241941 +HGNC:33420 KRT18P50 keratin 18 pseudogene 50 pseudogene pseudogene Approved 6q16.1 06q16.1 2007-03-19 2014-11-19 442236 ENSG00000219941 OTTHUMG00000015235 NT_025741 PGOHUM00000243715 +HGNC:33421 KRT18P51 keratin 18 pseudogene 51 pseudogene pseudogene Approved 4q31.21 04q31.21 2007-03-19 2012-10-16 391703 ENSG00000250504 OTTHUMG00000161431 NT_016354 PGOHUM00000261392 +HGNC:37888 KRT18P52 keratin 18 pseudogene 52 pseudogene pseudogene Approved 2p22.3 02p22.3 2010-03-08 2016-10-05 100418769 ENSG00000237007 OTTHUMG00000152055 NG_021498 PGOHUM00000240007 +HGNC:38714 KRT18P53 keratin 18 pseudogene 53 pseudogene pseudogene Approved Xp22.33 Xp22.33 2010-07-28 2014-11-19 106478925 ENSG00000229232 OTTHUMG00000021051 NG_043536 PGOHUM00000241164 +HGNC:39425 KRT18P54 keratin 18 pseudogene 54 pseudogene pseudogene Approved 4q28.3 04q28.3 2010-12-09 2010-12-09 100418792 ENSG00000250834 OTTHUMG00000161222 NG_025165 PGOHUM00000245701 +HGNC:26874 KRT18P55 keratin 18 pseudogene 55 pseudogene pseudogene Approved 17q11.2 17q11.2 2011-07-20 2013-06-25 284085 ENSG00000265480 OTTHUMG00000179422 NR_028334 PGOHUM00000237009 +HGNC:43923 KRT18P56 keratin 18 pseudogene 56 pseudogene pseudogene Approved 5p13.1 05p13.1 2012-05-04 2012-05-04 106479027 ENSG00000249668 OTTHUMG00000162070 NG_044313 PGOHUM00000260056 +HGNC:48884 KRT18P57 keratin 18 pseudogene 57 pseudogene pseudogene Approved 1p13.2 01p13.2 2013-06-25 2013-06-25 643329 ENSG00000215867 OTTHUMG00000011952 NG_022732 PGOHUM00000244145 +HGNC:48885 KRT18P58 keratin 18 pseudogene 58 pseudogene pseudogene Approved 11p15.4 11p15.4 2013-06-25 2013-06-25 644030 ENSG00000254831 OTTHUMG00000165375 NG_029277 PGOHUM00000242153 +HGNC:48886 KRT18P59 keratin 18 pseudogene 59 pseudogene pseudogene Approved 11q24.2 11q24.2 2013-06-25 2013-06-25 399965 ENSG00000187686 OTTHUMG00000165881 NG_029288 PGOHUM00000257930 +HGNC:48887 KRT18P60 keratin 18 pseudogene 60 pseudogene pseudogene Approved 12q14.3 12q14.3 2013-06-25 2013-06-25 100418829 ENSG00000215208 OTTHUMG00000168871 NG_024029 PGOHUM00000239498 +HGNC:48888 KRT18P61 keratin 18 pseudogene 61 pseudogene pseudogene Approved 17q23.2 17q23.2 2013-06-25 2013-06-25 100418865 ENSG00000267083 OTTHUMG00000180065 NG_026259 PGOHUM00000237459 +HGNC:48889 KRT18P62 keratin 18 pseudogene 62 pseudogene pseudogene Approved 22q11.21 22q11.21 2013-06-25 2013-06-25 100287635 ENSG00000233471 OTTHUMG00000150111 NG_022875 PGOHUM00000246405 +HGNC:48890 KRT18P63 keratin 18 pseudogene 63 pseudogene pseudogene Approved 4p15.31 04p15.31 2013-06-25 2013-06-25 100288868 ENSG00000235413 OTTHUMG00000160322 NG_015822 PGOHUM00000245859 +HGNC:48891 KRT18P64 keratin 18 pseudogene 64 pseudogene pseudogene Approved 6q14.3 06q14.3 2013-06-25 2013-06-25 107133513 ENSG00000213211 OTTHUMG00000015134 NG_046670 PGOHUM00000258222 +HGNC:48892 KRT18P65 keratin 18 pseudogene 65 pseudogene pseudogene Approved 6q21 06q21 2013-06-25 2013-06-25 442249 ENSG00000215807 OTTHUMG00000015388 NG_022320 PGOHUM00000243330 +HGNC:48893 KRT18P66 keratin 18 pseudogene 66 pseudogene pseudogene Approved 9p21.1 09p21.1 2013-06-25 2013-06-25 442405 ENSG00000235626 OTTHUMG00000019729 NG_021643 PGOHUM00000236425 +HGNC:48894 KRT18P67 keratin 18 pseudogene 67 pseudogene pseudogene Approved 9q33.2 09q33.2 2013-06-25 2013-06-25 100631239 ENSG00000233425 OTTHUMG00000020626 NG_029269 PGOHUM00000236767 +HGNC:48895 KRT18P68 keratin 18 pseudogene 68 pseudogene pseudogene Approved Xp11.3 Xp11.3 2013-06-25 2013-06-25 139060 ENSG00000213100 OTTHUMG00000021413 NG_029275 PGOHUM00000241735 +HGNC:6436 KRT19 keratin 19 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "K19|CK19|K1CS|MGC15366" "keratin, type I cytoskeletal 19|keratin, type I, 40-kd|cytokeratin 19|40-kDa keratin intermediate filament" keratin 19, type I Keratins, type I 608 1988-05-11 2016-03-09 2016-03-09 3880 ENSG00000171345 OTTHUMG00000133422 uc002hxd.5 NM_002276 CCDS11399 P08727 16831889 MGI:96693 RGD:619936 KRT19 148020 HGNC:6436 +HGNC:33422 KRT19P1 keratin 19 pseudogene 1 pseudogene pseudogene Approved 6q13 06q13 2007-03-20 2013-02-07 441160 ENSG00000218014 OTTHUMG00000015007 NT_007299 PGOHUM00000243669 +HGNC:33423 KRT19P2 keratin 19 pseudogene 2 pseudogene pseudogene Approved 12q22 12q22 KRT19P5 keratin 19 pseudogene 5 2007-03-20 2014-11-19 160313 ENSG00000216306 OTTHUMG00000170700 NT_019546 PGOHUM00000239898 +HGNC:33424 KRT19P3 keratin 19 pseudogene 3 pseudogene pseudogene Approved 4q25 04q25 2007-03-20 2013-02-07 442114 ENSG00000249681 OTTHUMG00000161105 NT_016354 PGOHUM00000245653 +HGNC:45073 KRT19P4 keratin 19 pseudogene 4 pseudogene pseudogene Approved 10q21.3 10q21.3 2013-02-07 2013-02-07 100128041 ENSG00000234102 OTTHUMG00000018347 NG_022181 PGOHUM00000238825 +HGNC:45076 KRT19P6 keratin 19 pseudogene 6 pseudogene pseudogene Approved 4q22.1 04q22.1 2013-02-07 2013-02-07 106480807 ENSG00000249891 OTTHUMG00000161034 NG_044217 PGOHUM00000245622 +HGNC:20412 KRT20 keratin 20 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "CK20|K20|MGC35423" keratin 20, type I Keratins, type I 608 2003-02-04 2016-03-09 2016-03-09 54474 ENSG00000171431 OTTHUMG00000133366 uc002hvl.4 BC031559 NM_019010 CCDS11379 P35900 "8359595|12515621|16831889" MGI:1914059 RGD:628646 KRT20 608218 HGNC:20412 +HGNC:6437 KRT22 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-01-03 +HGNC:6438 KRT23 keratin 23 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "K23|DKFZP434G032|HAIK1|CK23|MGC26158" "keratin 23 (histone deacetylase inducible)|keratin 23, type I" Keratins, type I 608 2000-07-31 2016-03-09 2016-03-09 25984 ENSG00000108244 OTTHUMG00000133376 uc002hvm.3 AF102848 XM_005257200 "CCDS11380|CCDS62182" Q9C075 "11135429|16831889" MGI:2148866 RGD:1308838 KRT23 606194 HGNC:6438 +HGNC:18527 KRT24 keratin 24 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "FLJ20261|MGC138169|MGC138173" keratin 24, type I Keratins, type I 608 2002-04-26 2016-03-09 2016-03-09 192666 ENSG00000167916 OTTHUMG00000133372 uc002hvd.3 NM_019016 CCDS11372 Q2M2I5 16831889 MGI:1922956 RGD:1303157 KRT24 607742 HGNC:18527 +HGNC:30839 KRT25 keratin 25 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KRT25A "keratin 25A|keratin 25, type I" Keratins, type I 608 2004-02-03 2006-07-17 2016-03-09 2016-03-09 147183 ENSG00000204897 OTTHUMG00000133373 uc002hve.3 AK129503 NM_181534 CCDS11373 Q7Z3Z0 16831889 MGI:1918060 RGD:1359097 KRT25 616646 448847 HGNC:30839 +HGNC:30840 KRT26 keratin 26 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KRT25B "keratin 25B|keratin 26, type I" Keratins, type I 608 2004-02-03 2006-07-17 2016-03-09 2016-03-09 353288 ENSG00000186393 OTTHUMG00000133370 uc002hvf.4 AJ564205 NM_181539 CCDS11374 Q7Z3Y9 16831889 MGI:2444913 RGD:1303322 KRT26 616675 HGNC:30840 +HGNC:30841 KRT27 keratin 27 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KRT25C "keratin 25C|keratin 27, type I" Keratins, type I 608 2004-02-03 2006-07-17 2016-03-09 2016-03-09 342574 ENSG00000171446 OTTHUMG00000133371 uc002hvg.3 AJ564206 NM_181537 CCDS11375 Q7Z3Y8 16831889 MGI:1339999 RGD:1359115 KRT27 616676 HGNC:30841 +HGNC:30842 KRT28 keratin 28 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KRT25D "keratin 25D|keratin 28, type I" Keratins, type I 608 2004-02-03 2006-07-17 2016-03-09 2016-03-09 162605 ENSG00000173908 OTTHUMG00000133365 uc002hvh.2 AK129827 NM_181535 CCDS11376 Q7Z3Y7 16831889 MGI:1918093 RGD:1309530 KRT28 616677 HGNC:30842 +HGNC:6448 KRT31 keratin 31 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 Ha-1 hard keratin type I 1 KRTHA1 "keratin, hair, acidic, 1|keratin 31, type I" Keratins, type I 608 1998-04-21 2006-07-17 2016-03-09 2016-03-09 3881 ENSG00000094796 OTTHUMG00000133423 uc002hwn.4 X86570 NM_002277 CCDS11391 Q15323 "7578244|16831889" MGI:1309993 KRT31 601077 HGNC:6448 +HGNC:6449 KRT32 keratin 32 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 Ha-2 hard keratin type I KRTHA2 "keratin, hair, acidic, 2|keratin 32, type I" Keratins, type I 608 1998-04-21 2006-07-17 2016-03-09 2016-03-09 3882 ENSG00000108759 OTTHUMG00000133430 uc002hwr.4 X90761 NM_002278 CCDS11393 Q14532 "7556444|8823373|16831889" MGI:1309995 RGD:1359701 KRT32 602760 HGNC:6449 +HGNC:6450 KRT33A keratin 33A protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "Ha-3I|Krt1-3" hard keratin type I 3I KRTHA3A "keratin, hair, acidic, 3A|keratin 33A, type I" Keratins, type I 608 2004-10-20 2006-07-17 2016-03-09 2016-03-09 3883 ENSG00000006059 OTTHUMG00000133432 uc002hwk.3 Y16788 NM_004138 CCDS11388 O76009 "7565656|16831889" MGI:1919138 RGD:1306249 KRT33A 602761 HGNC:6450 +HGNC:6451 KRT33B keratin 33B protein-coding gene gene with protein product Approved 17q21.2 17q21.2 Ha-3II hard keratin type I 3II KRTHA3B "keratin, hair, acidic, 3B|keratin 33B, type I" Keratins, type I 608 1998-04-21 2006-07-17 2016-03-09 2016-03-09 3884 ENSG00000131738 OTTHUMG00000133429 uc002hwl.4 X82634 NM_002279 CCDS11389 Q14525 "7565656|16831889" MGI:1309991 KRT33B 602762 HGNC:6451 +HGNC:6452 KRT34 keratin 34 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 Ha-4 hard keratin type I 4 KRTHA4 "keratin, hair, acidic, 4|keratin 34, type I" Keratins, type I 608 1998-04-21 2006-07-17 2016-03-09 2016-03-09 3885 ENSG00000131737 OTTHUMG00000133436 uc002hwm.4 Y16790 NM_021013 CCDS11390 O76011 "2431943|9756910|16831889" MGI:1309994 KRT34 602763 HGNC:6452 +HGNC:6453 KRT35 keratin 35 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 Ha-5 hard keratin type I 5 KRTHA5 "keratin, hair, acidic, 5|keratin 35, type I" Keratins, type I 608 1998-04-21 2006-07-17 2016-03-09 2016-03-09 3886 ENSG00000197079 OTTHUMG00000133425 uc002hws.4 X90762 NM_002280 CCDS11394 Q92764 "8823373|16831889" MGI:1858899 RGD:1305300 KRT35 602764 HGNC:6453 +HGNC:6454 KRT36 keratin 36 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KRTHA6 "keratin, hair, acidic, 6|keratin 36, type I" Keratins, type I 608 1998-11-11 2006-07-17 2016-03-09 2016-03-09 8689 ENSG00000126337 OTTHUMG00000133431 uc002hwt.3 Y16792 NM_003771 CCDS11395 O76013 "9756910|16831889" MGI:109364 RGD:1305792 KRT36 604540 HGNC:6454 +HGNC:6455 KRT37 keratin 37 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KRTHA7 "keratin, hair, acidic, 7|keratin 37, type I" Keratins, type I 608 1998-11-11 2006-07-17 2016-03-09 2016-03-09 8688 ENSG00000108417 OTTHUMG00000133606 uc002hwp.2 Y16793 NM_003770 CCDS32653 O76014 "9756910|16831889" KRT37 604541 HGNC:6455 +HGNC:6456 KRT38 keratin 38 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KRTHA8 "keratin, hair, acidic, 8|keratin 38, type I" Keratins, type I 608 1998-11-11 2006-07-17 2016-03-09 2016-03-09 8687 ENSG00000171360 OTTHUMG00000133439 uc002hwq.2 Y16794 NM_006771 CCDS11392 O76015 "9756910|16831889" KRT38 604542 HGNC:6456 +HGNC:32971 KRT39 keratin 39 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KA35 keratin 39, type I Keratins, type I 608 2006-07-17 2016-03-09 2016-03-09 390792 ENSG00000196859 OTTHUMG00000133424 uc002hvo.1 AJ786657 NM_213656 CCDS11382 Q6A163 16831889 MGI:3588208 RGD:1303032 KRT39 616678 HGNC:32971 +HGNC:26707 KRT40 keratin 40 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "FLJ36600|KA36" keratin 40, type I Keratins, type I 608 2006-07-17 2016-03-09 2016-03-09 125115 ENSG00000204889 OTTHUMG00000133596 uc010cxh.2 AK093919 NM_182497 CCDS42320 Q6A162 16831889 MGI:3629968 RGD:1359145 KRT40 616679 HGNC:26707 +HGNC:6457 KRT41P keratin 41 pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 "phihHaA|HHaA" KRTHAP1 keratin, hair, acidic pseudogene 1 1998-11-11 2006-07-17 2006-07-17 2014-04-02 8686 ENSG00000225438 OTTHUMG00000133601 Y16795 NG_000018 "9756910|16831889" PGOHUM00000237073 +HGNC:27581 KRT42P keratin 42 pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 2006-07-17 2013-06-25 284116 ENSG00000214514 OTTHUMG00000152412 AK095281 NR_033415 16831889 PGOHUM00000237076 +HGNC:48870 KRT43P keratin 43 pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 2013-06-19 2015-01-22 2015-01-22 100418861 ENSG00000236473 OTTHUMG00000133683 NG_026184 PGOHUM00000237075 +HGNC:28927 KRT71 keratin 71 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "KRT6IRS|KRT6IRS1|K6IRS1" keratin 71, type II Keratins, type II 609 2006-07-17 2016-03-09 2016-03-09 112802 ENSG00000139648 OTTHUMG00000167831 uc001sao.3 AJ308600 NM_033448 CCDS8831 Q3SY84 "11982755|12648212|16831889" MGI:1861586 RGD:1584538 KRT71 608245 319038 HGNC:28927 +HGNC:28932 KRT72 keratin 72 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "K6IRS2|KRT6IRS2|KRT6|K6irs" keratin 72, type II Keratins, type II 609 2006-07-17 2016-03-09 2016-03-09 140807 ENSG00000170486 OTTHUMG00000169744 uc001saq.2 AY033495 NM_080747 "CCDS8833|CCDS53795" Q14CN4 "12648212|11703281|16831889" MGI:2146034 RGD:1303216 KRT72 608246 HGNC:28932 +HGNC:28928 KRT73 keratin 73 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "KRT6IRS3|K6IRS3" keratin 73, type II Keratins, type II 609 2006-07-17 2016-03-09 2016-03-09 319101 ENSG00000186049 OTTHUMG00000169746 uc001sas.3 AJ508776 NM_175068 CCDS8834 Q86Y46 "12648212|16831889" MGI:3607712 RGD:1359597 KRT73 608247 HGNC:28928 +HGNC:49607 KRT73-AS1 KRT73 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 2014-01-24 2014-01-24 100127967 ENSG00000257495 OTTHUMG00000169745 AK128146 NR_126005 +HGNC:28929 KRT74 keratin 74 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "K6IRS4|KRT5C|KRT6IRS4" keratin 74, type II Keratins, type II 609 2006-07-17 2016-03-09 2016-03-09 121391 ENSG00000170484 OTTHUMG00000169658 uc001sap.1 BK000977 NM_175053 CCDS8832 Q7RTS7 "12648212|16831889" MGI:3629975 KRT74 608248 229791 HGNC:28929 +HGNC:24431 KRT75 keratin 75 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 K6HF keratin 75, type II Keratins, type II 609 2006-07-17 2016-03-09 2016-03-09 9119 ENSG00000170454 OTTHUMG00000169592 uc001saj.3 Y19212 NM_004693 CCDS8827 O95678 "9856802|10692104|16831889" MGI:1923500 RGD:1359576 KRT75 609025 HGNC:24431 +HGNC:24430 KRT76 keratin 76 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HUMCYT2A|KRT2B|KRT2P" keratin 76, type II Keratins, type II 609 2006-07-17 2016-03-09 2016-03-09 51350 ENSG00000185069 OTTHUMG00000169797 uc001sax.3 M99063 NM_015848 CCDS8838 Q01546 "1282112|16831889" MGI:1924305 RGD:1303078 KRT76 616671 HGNC:24430 +HGNC:20411 KRT77 keratin 77 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 KRT1B "keratin 1B|keratin 77, type II" Keratins, type II 609 2003-02-04 2006-07-17 2016-03-09 2016-03-09 374454 ENSG00000189182 OTTHUMG00000169450 uc001saw.4 BK000975 NM_175078 CCDS8837 Q7Z794 "11683385|16831889" MGI:3588209 RGD:1302968 KRT77 611158 HGNC:20411 +HGNC:28926 KRT78 keratin 78 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 K5B keratin 78, type II Keratins, type II 609 2006-07-17 2016-03-09 2016-03-09 196374 ENSG00000170423 OTTHUMG00000169880 uc001sbc.1 AK096419 NM_173352 "CCDS8840|CCDS73473" Q8N1N4 16831889 MGI:1917529 RGD:1591341 KRT78 611159 HGNC:28926 +HGNC:28930 KRT79 keratin 79 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "K6L|KRT6L" keratin 6-like keratin 79, type II Keratins, type II 609 2007-07-03 2016-03-09 2016-03-09 338785 ENSG00000185640 OTTHUMG00000169878 uc001sbb.4 AJ564105 NM_175834 CCDS8839 Q5XKE5 11683385 MGI:2385030 RGD:1583372 KRT79 611160 +HGNC:27056 KRT80 keratin 80 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 KB20 keratin 80, type II Keratins, type II 609 2006-07-17 2016-03-09 2016-03-09 144501 ENSG00000167767 OTTHUMG00000150193 uc001rzx.3 BX537567 NM_182507 "CCDS8821|CCDS41784" Q6KB66 16831889 MGI:1921377 RGD:1359177 KRT80 611161 HGNC:27056 +HGNC:6458 KRT81 keratin 81 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 Hb-1 hard keratin type II 1 KRTHB1 "keratin, hair, basic, 1|keratin 81, type II" Keratins, type II 609 1998-04-21 2006-07-17 2016-03-09 2016-10-05 3887 ENSG00000205426 OTTHUMG00000167574 uc001sab.4 X81420 NM_002281 CCDS31805 Q14533 "7556444|16831889" MGI:1928858 RGD:1303316 KRT81 602153 122928 HGNC:6458 +HGNC:6459 KRT82 keratin 82 protein-coding gene gene with protein product Approved 12q13 12q13 Hb-2 hard keratin type II 2 KRTHB2 "keratin, hair, basic, 2|keratin 82, type II" Keratins, type II 609 1998-04-21 2006-07-17 2016-03-09 2016-03-09 3888 ENSG00000161850 OTTHUMG00000169636 uc001sai.2 Y19207 NM_033033 CCDS8826 Q9NSB4 "2431943|16831889" MGI:2149248 RGD:1359276 KRT82 601078 HGNC:6459 +HGNC:6460 KRT83 keratin 83 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 Hb-3 hard keratin type II KRTHB3 "keratin, hair, basic, 3|keratin 83, type II" Keratins, type II 609 1998-04-21 2006-07-17 2016-03-09 2016-03-09 3889 ENSG00000170523 OTTHUMG00000169632 uc001saf.2 X99141 NM_002282 CCDS8823 P78385 "9084137|16831889" MGI:3690448 RGD:1583565 KRT83 602765 122932 HGNC:6460 +HGNC:6461 KRT84 keratin 84 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 Hb-4 hard keratin type II 4 KRTHB4 "keratin, hair, basic, 4|keratin 84, type II" Keratins, type II 609 1998-04-21 2006-07-17 2016-03-09 2016-10-05 3890 ENSG00000161849 OTTHUMG00000169634 uc001sah.2 Y19209 NM_033045 CCDS8825 Q9NSB2 "2431943|16831889" MGI:96700 RGD:1359402 KRT84 602766 HGNC:6461 +HGNC:6462 KRT85 keratin 85 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 Hb-5 hard keratin type II KRTHB5 "keratin, hair, basic, 5|keratin 85, type II" Keratins, type II 609 1998-04-21 2006-07-17 2016-03-09 2016-03-09 3891 ENSG00000135443 OTTHUMG00000169633 uc001sag.4 X99140 NM_002283 "CCDS8824|CCDS73472" P78386 "9084137|16831889" RGD:1303149 KRT85 602767 122936 HGNC:6462 +HGNC:6463 KRT86 keratin 86 protein-coding gene gene with protein product Approved 12q13 12q13 "MNX|Hb6" hard keratin type II 6 KRTHB6 "keratin, hair, basic, 6 (monilethrix)|keratin 86, type II" Keratins, type II 609 1998-04-21 2006-07-17 2016-03-10 2016-03-10 3892 ENSG00000170442 OTTHUMG00000184153 uc009zmg.3 X99142 NM_002284 CCDS41785 O43790 "9241275|16831889" MGI:109362 RGD:1303215 KRT86 601928 122940 HGNC:6463 +HGNC:30198 KRT87P keratin 87 pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 HBD "KRTHBP4|KRT121P" "keratin, hair, basic pseudogene 4|keratin 121 pseudogene" 2004-02-03 2014-01-24 2014-01-24 2014-01-24 85349 ENSG00000135477 OTTHUMG00000165548 Y19216 NG_000944 A6NCN2 "10692104|16831889" MGI:3665486 RGD:1303024 +HGNC:30197 KRT88P keratin 88 pseudogene pseudogene pseudogene Approved 12q13 12q13 HBC "KRTHBP3|KRT122P" "keratin, hair, basic pseudogene 3|keratin 122 pseudogene" 2004-02-03 2014-01-24 2014-01-24 2014-01-24 85348 Y19215 NG_000943 "10692104|16831889" MGI:1913572 +HGNC:30196 KRT89P keratin 89 pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 HBB "KRTHBP2|KRT123P" "keratin, hair, basic pseudogene 2|keratin 123 pseudogene" 2004-02-03 2014-01-24 2014-01-24 2015-01-20 85344 ENSG00000274928 OTTHUMG00000187921 Y19214 NG_000940 "10692104|16831889" PGOHUM00000291666 +HGNC:30195 KRT90P keratin 90 pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 HBA "KRTHBP1|KRT124P" "keratin, hair, basic pseudogene 1|keratin 124 pseudogene" 2004-02-03 2014-01-24 2014-01-24 2014-11-19 85340 ENSG00000257844 OTTHUMG00000169770 Y19213 NG_000938 "10692104|16831889" MGI:3045312 PGOHUM00000261132 +HGNC:48875 KRT125P keratin 125 pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 2013-06-15 2013-06-20 100418828 ENSG00000258036 OTTHUMG00000169753 NG_024014 PGOHUM00000239460 +HGNC:32970 KRT126P keratin 126 pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 2006-07-17 2013-06-25 643865 ENSG00000257402 OTTHUMG00000169751 BK003989 XM_927136 16831889 PGOHUM00000239459 +HGNC:40019 KRT127P keratin 127 pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 KRT3P1 keratin 3 pseudogene 1 2011-05-03 2013-06-20 2013-06-20 2013-06-25 100418779 ENSG00000257125 OTTHUMG00000169768 NG_024015 PGOHUM00000239462 +HGNC:48882 KRT128P keratin 128 pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 2013-06-25 2014-01-24 2014-01-24 2014-01-24 106480238 ENSG00000258120 OTTHUMG00000169747 NG_043793 PGOHUM00000239458 +HGNC:28695 KRT222 keratin 222 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KA21|MGC45562" KRT222P "keratin 222 pseudogene|keratin 222, type II" Keratins, type II 609 2006-07-17 2009-08-25 2016-03-10 2016-03-15 125113 ENSG00000213424 OTTHUMG00000133374 uc002hvc.3 AK092967 NM_152349 CCDS11371 Q8N1A0 16831889 MGI:2442728 RGD:1560383 KRT222 +HGNC:32968 KRT223P keratin 223 pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 2006-07-17 2016-03-15 643115 ENSG00000229028 OTTHUMG00000133585 NG_009669 16831889 PGOHUM00000237070 +HGNC:16772 KRTAP1-1 keratin associated protein 1-1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KAP1.1B|HB2A|KAP1.1|KAP1.1A" Keratin associated proteins 619 2002-08-09 2015-09-03 81851 ENSG00000188581 OTTHUMG00000133592 uc060faj.1 AJ406926 NM_030967 CCDS42324 Q07627 11279113 "MGI:1916914|MGI:3650443|MGI:3651229" KRTAP1-1 608819 +HGNC:16771 KRTAP1-3 keratin associated protein 1-3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP1.3 Keratin associated proteins 619 2002-08-09 2015-09-03 81850 ENSG00000221880 OTTHUMG00000133583 uc002hvv.4 AJ406927 NM_030966 CCDS42323 Q8IUG1 11279113 "MGI:1916914|MGI:3650443|MGI:3651229" KRTAP1-3 608820 +HGNC:18904 KRTAP1-4 keratin associated protein 1-4 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP1.4 Keratin associated proteins 619 2002-08-09 2015-09-03 728255 ENSG00000204887 OTTHUMG00000133631 uc031raf.2 AC007455 NM_001257305 CCDS58548 P0C5Y4 "MGI:1916914|MGI:3650443|MGI:3651229" KRTAP1-4 608821 +HGNC:16777 KRTAP1-5 keratin associated protein 1-5 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP1.5 Keratin associated proteins 619 2002-08-09 2015-09-03 83895 ENSG00000221852 OTTHUMG00000133587 uc002hvu.4 AJ406928 NM_031957 CCDS42321 Q9BYS1 11279113 "MGI:1916914|MGI:3650443|MGI:3651229" RGD:2324575 KRTAP1-5 608822 +HGNC:16775 KRTAP2-1 keratin associated protein 2-1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP2.1A Keratin associated proteins 619 2002-08-09 2015-09-03 81872 ENSG00000212725 OTTHUMG00000171405 uc010cxi.4 AJ296345 NM_001123387 CCDS42325 Q9BYU5 11279113 MGI:3652059 RGD:1561281 KRTAP2-1 +HGNC:18905 KRTAP2-2 keratin associated protein 2-2 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP2.2 Keratin associated proteins 619 2002-08-09 2015-09-03 728279 ENSG00000214518 OTTHUMG00000133593 uc010cxj.4 AJ302536 XM_017030240 "CCDS32648|CCDS54122" Q9BYT5 KRTAP2-2 +HGNC:18906 KRTAP2-3 keratin associated protein 2-3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP2.3 Keratin associated proteins 619 2002-08-09 2015-09-03 730755 ENSG00000212724 OTTHUMG00000133655 uc002hvx.4 BC012486 NM_001165252 CCDS54123 P0C7H8 "MGI:1918703|MGI:3651231|MGI:3651233" KRTAP2-3 +HGNC:18891 KRTAP2-4 keratin associated protein 2-4 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP2.4 Keratin associated proteins 619 2002-08-09 2015-09-03 85294 ENSG00000213417 OTTHUMG00000133594 uc002hvy.3 AJ406930 NM_033184 Q9BYR9 11279113 "MGI:1918703|MGI:3651231|MGI:3651233" RGD:1562309 KRTAP2-4 +HGNC:18920 KRTAP2-5P keratin associated protein 2-5, pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 KAP2A KRTAP2P1 keratin associated protein 2 pseudogene 1 Keratin associated proteins 619 2002-08-09 2010-01-06 2010-01-06 2010-09-30 85343 ENSG00000237230 OTTHUMG00000133635 AC025904 NG_000939 PGOHUM00000237388 +HGNC:16778 KRTAP3-1 keratin associated protein 3-1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP3.1 Keratin associated proteins 619 2002-08-09 2015-09-03 83896 ENSG00000212901 OTTHUMG00000133595 uc002hvt.2 AJ406931 NM_031958 CCDS32645 Q9BYR8 11279113 MGI:1916723 RGD:1596817 KRTAP3-1 +HGNC:16779 KRTAP3-2 keratin associated protein 3-2 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP3.2 Keratin associated proteins 619 2002-08-09 2015-09-03 83897 ENSG00000212900 OTTHUMG00000133581 uc002hvs.4 AJ406932 NM_031959 CCDS32644 Q9BYR7 11279113 MGI:1913630 RGD:1596828 KRTAP3-2 +HGNC:18890 KRTAP3-3 keratin associated protein 3-3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP3.3 Keratin associated proteins 619 2002-08-09 2015-09-03 85293 ENSG00000212899 OTTHUMG00000133591 uc002hvr.1 AJ406933 NM_033185 CCDS32643 Q9BYR6 11279113 MGI:1913630 RGD:1307504 KRTAP3-3 +HGNC:18919 KRTAP3-4P keratin associated protein 3-4, pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 KAP3A KRTAP3P1 keratin associated protein 3 pseudogene 1 Keratin associated proteins 619 2002-08-09 2010-01-06 2010-01-06 2012-03-14 85345 ENSG00000226776 OTTHUMG00000133637 AC007455 NG_000941 PGOHUM00000237072 +HGNC:18907 KRTAP4-1 keratin associated protein 4-1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KAP4.1|KAP4.10" KRTAP4-10 keratin associated protein 4-10 Keratin associated proteins 619 2002-08-09 2015-09-03 85285 ENSG00000198443 OTTHUMG00000132081 uc060fau.1 AC006070 NM_033060 Q9BYQ7 11279113 KRTAP4-1 +HGNC:18900 KRTAP4-2 keratin associated protein 4-2 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP4.2 Keratin associated proteins 619 2002-08-09 2015-09-03 85291 ENSG00000244537 OTTHUMG00000133437 uc002hwd.3 AJ406934 NM_033062 CCDS11384 Q9BYR5 11279113 KRTAP4-2 +HGNC:18908 KRTAP4-3 keratin associated protein 4-3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP4.3 Keratin associated proteins 619 2002-08-09 2015-09-03 85290 ENSG00000196156 OTTHUMG00000133639 uc010cxl.4 AJ406935 NM_033187 CCDS42331 Q9BYR4 MGI:3651030 KRTAP4-3 +HGNC:16928 KRTAP4-4 keratin associated protein 4-4 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KAP4.4|KAP4.13" KRTAP4-13 keratin associated protein 4-13 Keratin associated proteins 619 2002-08-09 2015-09-03 84616 ENSG00000171396 OTTHUMG00000133428 uc002hwc.4 AJ406936 NM_032524 CCDS11383 Q9BYR3 11279113 RGD:6486396 KRTAP4-4 +HGNC:18899 KRTAP4-5 keratin associated protein 4-5 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP4.5 Keratin associated proteins 619 2002-08-09 2015-09-03 85289 ENSG00000198271 OTTHUMG00000133638 uc060fat.1 AJ406937 NM_033188 CCDS32650 Q9BYR2 11279113 KRTAP4-5 +HGNC:18909 KRTAP4-6 keratin associated protein 4-6 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KAP4.6|KAP4.15" KRTAP4-15 keratin associated protein 4-15 Keratin associated proteins 619 2002-08-09 2015-09-03 81871 ENSG00000198090 OTTHUMG00000133634 uc060fas.1 AJ406938 NM_030976 CCDS54125 Q9BYQ5 KRTAP4-6 +HGNC:18898 KRTAP4-7 keratin associated protein 4-7 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP4.7 Keratin associated proteins 619 2002-08-09 2015-09-03 100132476 ENSG00000240871 OTTHUMG00000133582 uc010wfn.3 AJ406939 NM_033061 CCDS45673 Q9BYR0 11279113 KRTAP4-7 +HGNC:17230 KRTAP4-8 keratin associated protein 4-8 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP4.8 Keratin associated proteins 619 2002-08-09 2015-09-03 728224 ENSG00000204880 OTTHUMG00000133580 uc060fao.1 AJ406940 NM_031960 CCDS45674 Q9BYQ9 11279113 MGI:3650330 KRTAP4-8 +HGNC:18910 KRTAP4-9 keratin associated protein 4-9 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP4.9 Keratin associated proteins 619 2002-08-09 2015-09-03 100132386 ENSG00000212722 OTTHUMG00000133584 uc010wfp.3 AJ406941 NM_001146041 CCDS54124 Q9BYQ8 "MGI:1916018|MGI:1916714|MGI:3652177|MGI:3652308|MGI:3705237|MGI:3709346" RGD:1591746 KRTAP4-9 +HGNC:18911 KRTAP4-11 keratin associated protein 4-11 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KAP4.11|KAP4.14" KRTAP4-14 keratin associated protein 4-14 Keratin associated proteins 619 2002-08-09 2015-09-03 653240 ENSG00000212721 OTTHUMG00000133586 uc002hvz.5 AC025904 NM_033059 CCDS45675 Q9BYQ6 RGD:1595429 KRTAP4-11 +HGNC:16776 KRTAP4-12 keratin associated protein 4-12 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP4.12 Keratin associated proteins 619 2002-08-09 2015-09-03 83755 ENSG00000213416 OTTHUMG00000133632 uc002hwa.4 AJ406943 NM_031854 CCDS32649 Q9BQ66 11279113 KRTAP4-12 +HGNC:18921 KRTAP4-16 keratin associated protein 4-16 other unknown Approved 17q21.2 17q21.2 KAP4A "KRTAP4P1|KRTAP4-16P" "keratin associated protein 4 pseudogene 1|keratin associated protein 4-16, pseudogene" Keratin associated proteins 619 2002-08-09 2016-03-15 2016-03-15 2016-03-15 85354 ENSG00000241241 OTTHUMG00000133590 uc060faq.1 AC025904 NG_005311 +HGNC:23596 KRTAP5-1 keratin associated protein 5-1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 KRTAP5.1 KRN1L keratin, cuticle, ultrahigh sulphur 1-like Keratin associated proteins 619 2003-12-01 2015-09-03 387264 ENSG00000205869 OTTHUMG00000057557 uc001ltu.1 AB126070 NM_001005922 CCDS31330 Q6L8H4 15144888 RGD:9278179 KRTAP5-1 148022 +HGNC:23597 KRTAP5-2 keratin associated protein 5-2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "KRTAP5.2|KRTAP5-8" Keratin associated proteins 619 2003-12-01 2014-11-19 440021 ENSG00000205867 OTTHUMG00000165547 uc001ltv.3 AB126071 NM_001004325 CCDS31331 Q701N4 15144888 MGI:1918873 KRTAP5-2 +HGNC:23598 KRTAP5-3 keratin associated protein 5-3 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "KRTAP5.3|KRTAP5-9" Keratin associated proteins 619 2003-12-01 2015-09-03 387266 ENSG00000196224 OTTHUMG00000057559 uc001ltw.1 AB126072 NM_001012708 CCDS41591 Q6L8H2 15144888 KRTAP5-3 +HGNC:23599 KRTAP5-4 keratin associated protein 5-4 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 KRTAP5.4 Keratin associated proteins 619 2003-12-01 2015-09-03 387267 ENSG00000241598 OTTHUMG00000057553 uc057xta.1 AB126073 NM_001012709 Q6L8H1 15144888 KRTAP5-4 +HGNC:23601 KRTAP5-5 keratin associated protein 5-5 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "KRTAP5.5|KRTAP5-11" Keratin associated proteins 619 2003-12-01 2014-11-19 439915 ENSG00000185940 OTTHUMG00000057554 uc001lty.4 AB125074 NM_001001480 CCDS41592 Q701N2 15144888 MGI:2149673 KRTAP5-5 +HGNC:23600 KRTAP5-6 keratin associated protein 5-6 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 KRTAP5.6 Keratin associated proteins 619 2003-12-01 2014-11-19 440023 ENSG00000205864 OTTHUMG00000043932 uc001lua.3 AB126075 NM_001012416 CCDS31332 Q6L8G9 15144888 KRTAP5-6 +HGNC:23602 KRTAP5-7 keratin associated protein 5-7 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "KRTAP5.7|KRTAP5-3" Keratin associated proteins 619 2003-12-01 2015-09-03 440050 ENSG00000244411 OTTHUMG00000057570 uc001oqq.2 AB126076 NM_001012503 CCDS41682 Q6L8G8 15144888 RGD:1592604 KRTAP5-7 +HGNC:23603 KRTAP5-8 keratin associated protein 5-8 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "KRTAP5.8|UHSKerB|KRTAP5-2" Keratin associated proteins 619 2003-12-01 2014-11-19 57830 ENSG00000241233 OTTHUMG00000057571 uc001oqr.1 AB126077 NM_021046 CCDS41683 O75690 15144888 KRTAP5-8 +HGNC:23604 KRTAP5-9 keratin associated protein 5-9 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "KRTAP5.9|KRTAP5-1" KRN1 Keratin associated proteins 619 2003-12-01 2015-09-03 3846 ENSG00000254997 OTTHUMG00000167263 uc001oqs.2 AB126078 NM_005553 CCDS53677 P26371 15144888 KRTAP5-9 148021 +HGNC:23605 KRTAP5-10 keratin associated protein 5-10 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 KRTAP5.10 Keratin associated proteins 619 2003-12-01 2014-11-18 387273 ENSG00000204572 OTTHUMG00000057585 uc001oqt.2 AB126079 NM_001012710 CCDS41684 Q6L8G5 15144888 KRTAP5-10 +HGNC:23606 KRTAP5-11 keratin associated protein 5-11 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "KRTAP5.11|KRTAP5-6" Keratin associated proteins 619 2003-12-01 2015-09-03 440051 ENSG00000204571 OTTHUMG00000057586 uc001oqu.3 AB126080 NM_001005405 CCDS41685 Q6L8G4 15144888 KRTAP5-11 +HGNC:23607 KRTAP5-13P keratin associated protein 5-13, pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 KRTAP5.P1 KRTAP5P1 keratin associated protein 5 pseudogene 1 Keratin associated proteins 619 2003-12-01 2010-01-06 2010-01-06 2014-11-19 387275 NG_027924 15144888 +HGNC:23608 KRTAP5-14P keratin associated protein 5-14, pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 KRTAP5.P2 KRTAP5P2 keratin associated protein 5 pseudogene 2 Keratin associated proteins 619 2003-12-01 2010-01-06 2010-01-06 2014-11-19 387276 ENSG00000249387 OTTHUMG00000057584 NG_027925 15144888 +HGNC:27877 KRTAP5-AS1 KRTAP5-1/KRTAP5-2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 2013-05-31 2013-05-31 338651 ENSG00000233930 OTTHUMG00000165546 NR_021489 +HGNC:18931 KRTAP6-1 keratin associated protein 6-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "KAP6.1|C21orf103" Keratin associated proteins 619 2003-02-21 2016-10-05 337966 ENSG00000184724 OTTHUMG00000057788 uc002yop.4 AP001708 NM_181602 CCDS13602 Q3LI64 12359730 KRTAP6-1 +HGNC:18932 KRTAP6-2 keratin associated protein 6-2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP6.2 Keratin associated proteins 619 2003-02-21 2016-10-05 337967 ENSG00000186930 OTTHUMG00000057794 uc011adc.3 AP001708 NM_181604 CCDS13600 Q3LI66 12359730 RGD:7742893 KRTAP6-2 +HGNC:18933 KRTAP6-3 keratin associated protein 6-3 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP6.3 Keratin associated proteins 619 2003-02-21 2016-10-05 337968 ENSG00000212938 OTTHUMG00000057791 uc002yom.4 AP001708 NM_181605 CCDS77622 Q3LI67 12359730 RGD:7637527 KRTAP6-3 +HGNC:18934 KRTAP7-1 keratin associated protein 7-1 (gene/pseudogene) protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP7.1 keratin associated protein 7-1 Keratin associated proteins 619 2003-02-20 2010-03-12 2015-09-03 337878 ENSG00000274749 OTTHUMG00000188305 uc032pxy.2 AJ457063 NM_181606 CCDS74780 Q8IUC3 12359730 MGI:1918613 RGD:1560879 +HGNC:18935 KRTAP8-1 keratin associated protein 8-1 protein-coding gene gene with protein product Approved 21q22.1 21q22.1 KAP8.1 Keratin associated proteins 619 2003-02-20 2015-08-25 337879 ENSG00000183640 OTTHUMG00000057771 uc002you.3 AJ457064 NM_175857 CCDS13607 Q8IUC2 12359730 MGI:1330293 RGD:2323315 KRTAP8-1 +HGNC:18948 KRTAP8-2P keratin associated protein 8-2, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 KAP8A KRTAP8P1 keratin associated protein 8 pseudogene 1 Keratin associated proteins 619 2003-02-21 2010-01-06 2010-01-06 2016-10-05 337980 ENSG00000233036 OTTHUMG00000057797 AP001709 NG_002669 12359730 +HGNC:18949 KRTAP8-3P keratin associated protein 8-3, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 KAP8B KRTAP8P2 keratin associated protein 8 pseudogene 2 Keratin associated proteins 619 2003-02-21 2010-01-06 2010-01-06 2016-10-05 337981 ENSG00000227840 OTTHUMG00000057781 AP001709 NG_002670 12359730 +HGNC:18912 KRTAP9-1 keratin associated protein 9-1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP9.1 KRTAP9L3 keratin associated protein 9-like 3 Keratin associated proteins 619 2002-11-19 2015-09-03 728318 ENSG00000240542 OTTHUMG00000133636 uc021txf.1 AC006070 NM_001190460 CCDS56029 A8MXZ3 MGI:3650333 KRTAP9-1 +HGNC:16926 KRTAP9-2 keratin associated protein 9-2 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP9.2 Keratin associated proteins 619 2002-08-09 2015-09-03 83899 ENSG00000239886 OTTHUMG00000133609 uc002hwf.3 AJ406946 NM_031961 CCDS32651 Q9BYQ4 11279113 RGD:1593000 KRTAP9-2 +HGNC:16927 KRTAP9-3 keratin associated protein 9-3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP9.3 Keratin associated proteins 619 2002-08-09 2015-09-03 83900 ENSG00000204873 OTTHUMG00000133427 uc021txg.1 AJ406947 NM_031962 CCDS11385 Q9BYQ3 11279113 KRTAP9-3 +HGNC:18902 KRTAP9-4 keratin associated protein 9-4 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP9.4 Keratin associated proteins 619 2002-08-09 2015-09-03 85280 ENSG00000241595 OTTHUMG00000133438 uc002hwi.3 AJ406948 NM_033191 CCDS11386 Q9BYQ2 11279113 KRTAP9-4 +HGNC:18914 KRTAP9-6 keratin associated protein 9-6 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP9.6 KRTAP9L2 keratin associated protein 9-like 2 Keratin associated proteins 619 2002-08-09 2015-09-03 100507608 ENSG00000212659 OTTHUMG00000133600 uc031rag.2 AC006070 XM_003118751 CCDS59286 A8MVA2 +HGNC:18915 KRTAP9-7 keratin associated protein 9-7 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP9.7 KRTAP9L1 keratin associated protein 9-like 1 Keratin associated proteins 619 2002-08-09 2015-09-03 100505724 ENSG00000180386 OTTHUMG00000133605 uc031rah.2 AC006070 XM_003118738 CCDS59287 A8MTY7 KRTAP9-7 +HGNC:17231 KRTAP9-8 keratin associated protein 9-8 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP9.8 Keratin associated proteins 619 2002-08-09 2015-09-03 83901 ENSG00000187272 OTTHUMG00000133604 uc002hwh.5 AJ406950 XM_017030241 CCDS42334 Q9BYQ0 11279113 KRTAP9-8 +HGNC:16773 KRTAP9-9 keratin associated protein 9-9 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KAP9.9|KAP9.5" KRTAP9-5 keratin associated protein 9-5 Keratin associated proteins 619 2002-08-09 2015-09-03 81870 ENSG00000198083 OTTHUMG00000133602 uc021txh.1 AJ406951 NM_030975 CCDS54127 Q9BYP9 11279113 KRTAP9-9 +HGNC:34210 KRTAP9-10P keratin associated protein 9-10, pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 Keratin associated proteins 619 2013-06-20 2013-06-20 106480422 ENSG00000237183 OTTHUMG00000133663 NG_045368 +HGNC:18918 KRTAP9-11P keratin associated protein 9-11, pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 KAP9A KRTAP9P1 keratin associated protein 9 pseudogene 1 Keratin associated proteins 619 2002-08-09 2010-01-06 2010-01-06 2012-03-14 85347 ENSG00000229351 OTTHUMG00000133608 AC006070 NG_000942 PGOHUM00000237391 +HGNC:48873 KRTAP9-12P keratin associated protein 9-12, pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 2013-06-20 2013-06-20 100287715 ENSG00000248807 OTTHUMG00000133633 NG_022467 PGOHUM00000237390 +HGNC:22966 KRTAP10-1 keratin associated protein 10-1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KAP10.1|KAP18.1" KRTAP18-1 Keratin associated proteins 619 2003-08-06 2015-09-03 386677 ENSG00000215455 OTTHUMG00000057627 uc002zfh.2 AJ566380 NM_198691 CCDS42954 P60331 KRTAP10-1 +HGNC:22967 KRTAP10-2 keratin associated protein 10-2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KAP10.2|KAP18.2" KRTAP18-2 Keratin associated proteins 619 2003-08-06 2015-09-03 386679 ENSG00000205445 OTTHUMG00000057625 uc002zfi.2 AJ566381 NM_198693 CCDS42955 P60368 KRTAP10-2 +HGNC:22968 KRTAP10-3 keratin associated protein 10-3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KAP10.3|KAP18.3" KRTAP18-3 Keratin associated proteins 619 2003-08-06 2015-09-03 386682 ENSG00000212935 OTTHUMG00000057628 uc002zfj.2 AJ566383 NM_198696 CCDS42956 P60369 RGD:1596048 KRTAP10-3 +HGNC:20521 KRTAP10-4 keratin associated protein 10-4 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KRTAP18.4|KAP10.4" KRTAP18-4 keratin associated protein 18-4 Keratin associated proteins 619 2003-11-21 2004-07-14 2004-07-12 2015-09-03 386672 ENSG00000215454 OTTHUMG00000057641 uc002zfk.2 AB076351 NM_198687 CCDS42957 P60372 KRTAP10-4 +HGNC:22969 KRTAP10-5 keratin associated protein 10-5 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KAP10.5|KAP18.5" KRTAP18-5 Keratin associated proteins 619 2003-08-06 2015-09-03 386680 ENSG00000241123 OTTHUMG00000057638 uc002zfl.2 AJ566384 NM_198694 CCDS42958 P60370 KRTAP10-5 +HGNC:20523 KRTAP10-6 keratin associated protein 10-6 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KRTAP18.6|KAP18.6|KAP10.6" KRTAP18-6 keratin associated protein 18-6 Keratin associated proteins 619 2003-11-21 2004-07-14 2004-07-12 2015-09-03 386674 ENSG00000188155 OTTHUMG00000057634 uc032qbq.1 AB076353 NM_198688 CCDS42959 P60371 RGD:1596032 KRTAP10-6 +HGNC:22970 KRTAP10-7 keratin associated protein 10-7 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KAP10.7|KAP18.7" KRTAP18-7 Keratin associated proteins 619 2003-08-06 2015-09-03 386675 ENSG00000272804 OTTHUMG00000188307 uc032qbr.1 AJ566385 NM_198689 CCDS74803 P60409 "MGI:1925013|MGI:3645300|MGI:3704118|MGI:3779677|MGI:3779678|MGI:3779917|MGI:3779918|MGI:3780046|MGI:3780866|MGI:3781411|MGI:3781416|MGI:3781428|MGI:3781463|MGI:5011587|MGI:5011853" KRTAP10-7 +HGNC:20525 KRTAP10-8 keratin associated protein 10-8 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KRTAP18.8|KAP10.8" KRTAP18-8 keratin associated protein 18-8 Keratin associated proteins 619 2003-11-21 2004-07-14 2004-07-12 2015-09-03 386681 ENSG00000187766 OTTHUMG00000057632 uc002zfo.1 AB076355 NM_198695 CCDS13713 P60410 KRTAP10-8 +HGNC:22971 KRTAP10-9 keratin associated protein 10-9 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KAP10.9|KAP18.9" KRTAP18-9 Keratin associated proteins 619 2003-08-06 2015-09-03 386676 ENSG00000221837 OTTHUMG00000057637 uc002zfp.5 AJ566386 NM_198690 CCDS42961 P60411 RGD:2318639 KRTAP10-9 +HGNC:22972 KRTAP10-10 keratin associated protein 10-10 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KAP10.10|KAP18.10|KRTAP18-10" Keratin associated proteins 619 2003-08-06 2015-09-03 353333 ENSG00000221859 OTTHUMG00000057631 uc002zfq.3 AJ566387 NM_181688 CCDS33585 P60014 KRTAP10-10 +HGNC:20528 KRTAP10-11 keratin associated protein 10-11 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KRTAP18.11|KAP18.11|KAP10.11" KRTAP18-11 keratin associated protein 10-11 Keratin associated proteins 619 2003-11-21 2004-07-14 2004-07-12 2015-09-03 386678 ENSG00000243489 OTTHUMG00000057626 uc002zfr.5 AB076359 NM_198692 CCDS42962 P60412 KRTAP10-11 +HGNC:20533 KRTAP10-12 keratin associated protein 10-12 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KRTAP18.12|KAP10.12" KRTAP18-12 keratin associated protein 18-12 Keratin associated proteins 619 2003-11-21 2004-07-14 2004-07-12 2015-09-03 386685 ENSG00000189169 OTTHUMG00000057629 uc002zfw.1 AB076364 NM_198699 CCDS42967 P60413 KRTAP10-12 +HGNC:34213 KRTAP10-13P keratin associated protein 10-13, pseudogene pseudogene pseudogene Approved 21q22.3 21q22.3 Keratin associated proteins 619 2010-09-30 2014-11-19 100874224 ENSG00000236382 OTTHUMG00000057640 NG_032197 +HGNC:18922 KRTAP11-1 keratin associated protein 11-1 protein-coding gene gene with protein product Approved 21q22.1 21q22.1 KAP11.1 Keratin associated proteins 619 2003-02-20 2014-11-19 337880 ENSG00000182591 OTTHUMG00000057773 uc002yov.4 AJ457065 NM_175858 CCDS13608 Q8IUC1 12359730 MGI:99447 RGD:2323257 KRTAP11-1 600064 +HGNC:20529 KRTAP12-1 keratin associated protein 12-1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KRTAP12.1|KAP12.1" Keratin associated proteins 619 2003-08-06 2015-09-03 353332 ENSG00000187175 OTTHUMG00000057639 uc002zfv.3 AJ566388 NM_181686 CCDS42966 P59990 MGI:5588961 KRTAP12-1 +HGNC:20530 KRTAP12-2 keratin associated protein 12-2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KRTAP12.2|KAP12.2" Keratin associated proteins 619 2003-08-06 2015-09-03 353323 ENSG00000221864 OTTHUMG00000057636 uc002zfu.3 AJ566389 NM_181684 CCDS42965 P59991 "MGI:3641725|MGI:3641784|MGI:3642388" RGD:2319709 KRTAP12-2 +HGNC:20531 KRTAP12-3 keratin associated protein 12-3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 KRTAP12.3 Keratin associated proteins 619 2003-11-21 2015-09-03 386683 ENSG00000205439 OTTHUMG00000057630 uc002zft.3 AB076361 NM_198697 CCDS42964 P60328 KRTAP12-3 +HGNC:20532 KRTAP12-4 keratin associated protein 12-4 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 KRTAP12.4 Keratin associated proteins 619 2003-11-21 2015-09-03 386684 ENSG00000212933 OTTHUMG00000057633 uc002zfs.1 AB076360 NM_198698 CCDS42963 P60329 RGD:2319746 KRTAP12-4 +HGNC:34212 KRTAP12-5P keratin associated protein 12-5, pseudogene pseudogene pseudogene Approved 21q22.3 21q22.3 Keratin associated proteins 619 2013-06-20 2016-02-03 PGOHUM00000239185 +HGNC:18924 KRTAP13-1 keratin associated protein 13-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP13.1 Keratin associated proteins 619 2003-02-20 2015-09-03 140258 ENSG00000198390 OTTHUMG00000057800 uc002yoa.4 AJ457066 NM_181599 CCDS13590 Q8IUC0 12359730 MGI:2146359 RGD:2323555 KRTAP13-1 608718 +HGNC:18923 KRTAP13-2 keratin associated protein 13-2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP13-2 Keratin associated proteins 619 2003-02-21 2016-10-05 337959 ENSG00000182816 OTTHUMG00000057793 uc002ynz.5 AP001708 NM_181621 CCDS13589 Q52LG2 12359730 "MGI:1330835|MGI:1916946|MGI:2152338" KRTAP13-2 +HGNC:18925 KRTAP13-3 keratin associated protein 13-3 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP13.3 Keratin associated proteins 619 2003-02-21 2016-10-05 337960 ENSG00000240432 OTTHUMG00000057776 uc002yob.2 AP001708 NM_181622 CCDS13591 Q3SY46 12359730 KRTAP13-3 +HGNC:18926 KRTAP13-4 keratin associated protein 13-4 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP13.4 Keratin associated proteins 619 2003-02-21 2016-10-05 284827 ENSG00000186971 OTTHUMG00000057770 uc011acw.3 AP001708 NM_181600 CCDS13592 Q3LI77 12359730 KRTAP13-4 +HGNC:18929 KRTAP13-5P keratin associated protein 13-5, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 KAP13A KRTAP13P1 keratin associated protein 13 pseudogene 1 Keratin associated proteins 619 2003-02-21 2009-12-17 2009-12-17 2016-10-05 337964 ENSG00000233640 OTTHUMG00000057795 AP001708 NG_002667 12359730 PGOHUM00000239063 +HGNC:18930 KRTAP13-6P keratin associated protein 13-6, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 KAP13B KRTAP13P2 keratin associated protein 13 pseudogene 2 Keratin associated proteins 619 2003-02-21 2009-12-17 2009-12-17 2016-10-05 337965 ENSG00000250973 OTTHUMG00000057780 AP001708 NG_002668 12359730 +HGNC:18927 KRTAP15-1 keratin associated protein 15-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP15.1 Keratin associated proteins 619 2003-02-21 2016-10-05 254950 ENSG00000186970 OTTHUMG00000057784 uc002yod.4 AP001708 NM_181623 CCDS13593 Q3LI76 12359730 MGI:1347350 RGD:1311088 KRTAP15-1 +HGNC:18916 KRTAP16-1 keratin associated protein 16-1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP16.1 Keratin associated proteins 619 2002-11-19 2015-08-25 100505753 ENSG00000212657 OTTHUMG00000133640 uc021txi.1 AP001708 NM_001146182 CCDS56032 A8MUX0 MGI:3650326 RGD:2318578 KRTAP16-1 +HGNC:18917 KRTAP17-1 keratin associated protein 17-1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP17.1 Keratin associated proteins 619 2002-08-09 2015-09-03 83902 ENSG00000186860 OTTHUMG00000133433 uc002hwj.3 AJ406952 NM_031964 CCDS11387 Q9BYP8 MGI:1925164 RGD:7611738 KRTAP17-1 +HGNC:18936 KRTAP19-1 keratin associated protein 19-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP19.1 Keratin associated proteins 619 2003-02-20 2016-10-05 337882 ENSG00000184351 OTTHUMG00000057768 uc011acx.3 AJ457067 NM_181607 CCDS13594 Q8IUB9 12359730 KRTAP19-1 +HGNC:18937 KRTAP19-2 keratin associated protein 19-2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP19.2 Keratin associated proteins 619 2003-02-21 2016-10-05 337969 ENSG00000186965 OTTHUMG00000057772 uc011acy.3 AP001708 NM_181608 CCDS13595 Q3LHN2 12359730 KRTAP19-2 +HGNC:18938 KRTAP19-3 keratin associated protein 19-3 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP19.3 Keratin associated proteins 619 2003-02-21 2016-10-05 337970 ENSG00000244025 OTTHUMG00000057782 uc061zmf.1 AP001708 NM_181609 CCDS13596 Q7Z4W3 12359730 KRTAP19-3 +HGNC:18939 KRTAP19-4 keratin associated protein 19-4 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP19.4 Keratin associated proteins 619 2003-02-21 2016-10-05 337971 ENSG00000186967 OTTHUMG00000057767 uc011acz.3 AP001708 NM_181610 CCDS33534 Q3LI73 12359730 KRTAP19-4 +HGNC:18940 KRTAP19-5 keratin associated protein 19-5 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP19.5 Keratin associated proteins 619 2003-02-21 2016-10-05 337972 ENSG00000186977 OTTHUMG00000057774 uc011ada.3 AP001708 NM_181611 CCDS13597 Q3LI72 12359730 RGD:1588263 KRTAP19-5 +HGNC:18941 KRTAP19-6 keratin associated protein 19-6 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP19.6 Keratin associated proteins 619 2003-02-21 2016-10-05 337973 ENSG00000186925 OTTHUMG00000057779 uc002yok.2 AP001708 NM_001303120 CCDS13598 Q3LI70 12359730 KRTAP19-6 +HGNC:18942 KRTAP19-7 keratin associated protein 19-7 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP19.7 Keratin associated proteins 619 2003-02-21 2016-10-05 337974 ENSG00000244362 OTTHUMG00000057785 uc061zmg.1 AP001708 NM_181614 CCDS13599 Q3SYF9 12359730 KRTAP19-7 +HGNC:33898 KRTAP19-8 keratin associated protein 19-8 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 Keratin associated proteins 619 2007-11-23 2015-09-03 728299 ENSG00000206102 OTTHUMG00000057787 uc010glt.3 AB096964 NM_001099219 CCDS42917 Q3LI54 KRTAP19-8 +HGNC:18950 KRTAP19-9P keratin associated protein 19-9, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 KAP19A KRTAP19P1 keratin associated protein 19 pseudogene 1 Keratin associated proteins 619 2003-02-21 2009-12-17 2009-12-17 2016-10-05 337982 ENSG00000237841 OTTHUMG00000057789 AP001708 NG_002688 12359730 +HGNC:18951 KRTAP19-10P keratin associated protein 19-10, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 KAP19B KRTAP19P2 keratin associated protein 19 pseudogene 2 Keratin associated proteins 619 2003-02-21 2009-12-17 2009-12-17 2016-10-05 337983 ENSG00000235312 OTTHUMG00000057775 AP001708 NG_002689 12359730 +HGNC:18952 KRTAP19-11P keratin associated protein 19-11, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 KAP19C KRTAP19P3 keratin associated protein 19 pseudogene 3 Keratin associated proteins 619 2003-02-21 2009-12-17 2009-12-17 2016-10-05 337984 ENSG00000236612 OTTHUMG00000057799 AP001708 NG_002671 12359730 +HGNC:18943 KRTAP20-1 keratin associated protein 20-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP20.1 Keratin associated proteins 619 2003-02-21 2016-10-05 337975 ENSG00000244624 OTTHUMG00000057801 uc011ade.3 AP001708 NM_181615 CCDS13603 Q3LI63 12359730 RGD:7729737 KRTAP20-1 +HGNC:18944 KRTAP20-2 keratin associated protein 20-2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP20.2 Keratin associated proteins 619 2003-02-21 2016-10-05 337976 ENSG00000184032 OTTHUMG00000057786 uc011adg.3 AP001708 NM_181616 CCDS13604 Q3LI61 12359730 KRTAP20-2 +HGNC:34001 KRTAP20-3 keratin associated protein 20-3 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "KAP20.3|KAP19D" KRTAP19P4 keratin associated protein 19 pseudogene 4 Keratin associated proteins 619 2008-02-26 2008-02-26 2008-02-26 2014-11-19 337985 ENSG00000206104 OTTHUMG00000057798 uc010gls.1 NM_001128077 CCDS46642 Q3LI60 KRTAP20-3 +HGNC:34002 KRTAP20-4 keratin associated protein 20-4 other unknown Approved 21q22.11 21q22.11 KAP20.4 Keratin associated proteins 619 2008-02-26 2008-04-22 2008-02-26 2014-11-19 100151643 ENSG00000206105 OTTHUMG00000125519 uc011adf.2 NR_023342 Q3LI62 KRTAP20-4 +HGNC:18945 KRTAP21-1 keratin associated protein 21-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP21.1 Keratin associated proteins 619 2003-02-21 2016-10-05 337977 ENSG00000187005 OTTHUMG00000057777 uc011adi.3 AP001709 NM_181619 CCDS13606 Q3LI58 12359730 KRTAP21-1 +HGNC:18946 KRTAP21-2 keratin associated protein 21-2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP21.2 Keratin associated proteins 619 2003-02-21 2016-10-05 337978 ENSG00000187026 OTTHUMG00000057769 uc011adh.3 AP001709 NM_181617 CCDS13605 Q3LI59 12359730 KRTAP21-2 +HGNC:34216 KRTAP21-3 keratin associated protein 21-3 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 Keratin associated proteins 619 2009-07-20 2014-11-18 100288323 ENSG00000231068 OTTHUMG00000125533 uc021wii.1 AB180042 XM_002343741 CCDS54481 Q3LHN1 KRTAP21-3 +HGNC:18954 KRTAP21-4P keratin associated protein 21-4, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 KAP21A KRTAP21P1 keratin associated protein 21 pseudogene 1 Keratin associated proteins 619 2003-02-21 2010-01-06 2010-01-06 2016-10-05 337986 ENSG00000236400 OTTHUMG00000057790 AP001709 NG_002673 12359730 +HGNC:18947 KRTAP22-1 keratin associated protein 22-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP22.1 Keratin associated proteins 619 2003-02-21 2016-10-05 337979 ENSG00000186924 OTTHUMG00000057778 uc011add.3 AP001708 NM_181620 CCDS13601 Q3MIV0 12359730 KRTAP22-1 +HGNC:37091 KRTAP22-2 keratin associated protein 22-2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP22.2 Keratin associated proteins 619 2009-07-20 2015-09-03 100288287 ENSG00000206106 OTTHUMG00000065630 uc021wih.1 AB096950 XM_002343740 CCDS46641 Q3LI68 KRTAP22-2 +HGNC:18928 KRTAP23-1 keratin associated protein 23-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP23.1 Keratin associated proteins 619 2003-02-21 2016-10-05 337963 ENSG00000186980 OTTHUMG00000057792 uc002yny.2 AP001708 NM_181624 CCDS33533 A1A580 12359730 KRTAP23-1 +HGNC:33902 KRTAP24-1 keratin associated protein 24-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP24.1 Keratin associated proteins 619 2007-11-23 2015-08-25 643803 ENSG00000188694 OTTHUMG00000125483 uc002ynv.3 AB096935 NM_001085455 CCDS42915 Q3LI83 MGI:2685158 RGD:2320810 KRTAP24-1 +HGNC:34003 KRTAP25-1 keratin associated protein 25-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 KAP25.1 Keratin associated proteins 619 2008-02-26 2008-04-22 2008-02-26 2016-10-05 100131902 ENSG00000232263 OTTHUMG00000125482 uc010glr.1 NM_001128598 CCDS46640 Q3LHN0 KRTAP25-1 +HGNC:33760 KRTAP26-1 keratin associated protein 26-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 Keratin associated proteins 619 2007-11-23 2015-08-25 388818 ENSG00000197683 OTTHUMG00000057766 uc002ynw.5 AB096936 NM_203405 CCDS13588 Q6PEX3 MGI:1916783 RGD:1589096 KRTAP26-1 +HGNC:33864 KRTAP27-1 keratin associated protein 27-1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 Keratin associated proteins 619 2007-11-23 2015-09-03 643812 ENSG00000206107 OTTHUMG00000059577 uc002ynx.1 AB096937 NM_001077711 CCDS33532 Q3LI81 MGI:3646229 RGD:2320648 KRTAP27-1 +HGNC:34211 KRTAP29-1 keratin associated protein 29-1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 KAP29.2 Keratin associated proteins 619 2009-07-23 2015-09-03 100533177 ENSG00000212658 OTTHUMG00000133662 uc031rai.1 NM_001257309 CCDS62183 A8MX34 MGI:3652056 RGD:7702025 KRTAP29-1 +HGNC:28942 KRTCAP2 keratinocyte associated protein 2 protein-coding gene gene with protein product Approved 1q22 01q22 KCP2 Oligosaccharyltransferase complex subunits 445 2004-02-05 2016-03-01 200185 ENSG00000163463 OTTHUMG00000013904 uc001fho.4 AY157577 NM_173852 CCDS1096 Q8N6L1 "15835887|22266900" MGI:1913309 RGD:1308413 KRTCAP2 +HGNC:28943 KRTCAP3 keratinocyte associated protein 3 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 KCP3 2004-02-05 2014-11-19 200634 ENSG00000157992 OTTHUMG00000097782 uc021vfd.1 AY157576 NM_173853 CCDS1754 Q53RY4 MGI:1917065 RGD:1596516 KRTCAP3 +HGNC:16313 KRTDAP keratinocyte differentiation associated protein protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "KDAP|UNQ467" 2001-10-03 2016-02-15 2016-02-15 388533 ENSG00000188508 OTTHUMG00000155449 uc002nzh.4 AA297512 NM_207392 "CCDS12462|CCDS59377" P60985 11054531 MGI:1928282 RGD:71086 KRTDAP +HGNC:6465 KSR1 kinase suppressor of ras 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 RSU2 KSR kinase suppressor of ras RAF family 1157 2000-03-29 2005-12-14 2005-12-14 2015-07-15 8844 ENSG00000141068 OTTHUMG00000132051 uc002gzo.2 U43586 NM_014238 CCDS58532 Q8IVT5 8521512 MGI:105051 RGD:1308105 KSR1 601132 objectId:2051 +HGNC:44977 KSR1P1 kinase suppressor of ras 1 pseudogene 1 pseudogene pseudogene Approved 10q11.21 10q11.21 2012-12-20 2012-12-20 106479050 ENSG00000229485 OTTHUMG00000018006 NG_044498 PGOHUM00000258466 +HGNC:18610 KSR2 kinase suppressor of ras 2 protein-coding gene gene with protein product Approved 12q24.22-q24.23 12q24.22-q24.23 FLJ25965 RAF family 1157 2005-01-18 2016-10-11 283455 ENSG00000171435 OTTHUMG00000169020 uc001two.2 AY345972 NM_173598 CCDS61250 Q6VAB6 12471243 MGI:3610315 RGD:1562674 KSR2 610737 objectId:2052 +HGNC:6466 KSS Kearns-Sayre syndrome phenotype phenotype only Approved mitochondria mitochondria 1990-06-11 2014-02-03 +HGNC:25160 KTI12 KTI12 chromatin associated homolog protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "TOT4|MGC20419|SBBI81" KTI12 homolog, chromatin associated (S. cerevisiae) 2005-08-01 2015-07-03 2015-07-03 112970 ENSG00000198841 OTTHUMG00000008630 uc001ctj.2 NM_138417 CCDS562 Q96EK9 11929532 MGI:1923547 RGD:1591357 KTI12 +HGNC:6467 KTN1 kinectin 1 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "KIAA0004|CG1|KNT" kinectin 1 (kinesin receptor) 1997-05-22 2015-11-23 2015-11-23 3895 ENSG00000126777 OTTHUMG00000140312 uc001xcc.4 XM_017021278 "CCDS41957|CCDS41958|CCDS41959" Q86UP2 9605849 MGI:109153 RGD:1308719 KTN1 600381 +HGNC:19842 KTN1-AS1 KTN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q22.3 14q22.3 MYCLo-3 C14orf33 "chromosome 14 open reading frame 33|KTN1 antisense RNA 1 (non-protein coding)" 2002-11-27 2011-12-07 2012-08-15 2016-07-13 100129075 ENSG00000186615 OTTHUMG00000171057 uc001xbz.3 NR_027123 Q86SY8 25663692 KTN1-AS1 +HGNC:6468 KWE keratolytic winter erythema (Oudtshoorn skin disease) phenotype phenotype only Approved 8p23-p22 08p23-p22 1997-10-24 2003-10-17 3896 9311742 148370 +HGNC:28420 KXD1 KxDL motif containing 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FLJ25480|MGC2749|KXDL|BORCS4" C19orf50 chromosome 19 open reading frame 50 BLOC-1 related complex 1048 2006-08-08 2011-11-24 2011-11-24 2015-08-07 79036 ENSG00000105700 OTTHUMG00000183107 uc021uqq.1 AK098346 NM_024069 CCDS12381 Q9BQD3 21159114 MGI:1922870 RGD:1562866 615178 +HGNC:26576 KY kyphoscoliosis peptidase protein-coding gene gene with protein product Approved 3q22.2 03q22.2 FLJ33207 2004-06-25 2016-10-05 339855 ENSG00000174611 OTTHUMG00000159788 uc010hty.4 AK090526 NM_178554 CCDS46920 Q8NBH2 MGI:96709 RGD:1305407 KY 605739 +HGNC:1564 KYAT1 kynurenine aminotransferase 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "KATI|GTK" "glutamine transaminase K|kynurenine aminotransferase I|Glutamine--phenylpyruvate transaminase" CCBL1 "cysteine conjugate-beta lyase; cytoplasmic (glutamine transaminase K, kyneurenine aminotransferase)|cysteine conjugate beta lyase 1" 1995-09-08 2016-04-26 2016-04-26 2016-04-26 883 ENSG00000171097 OTTHUMG00000020767 uc004bwh.5 Y17448 XM_017015260 "CCDS43884|CCDS48038|CCDS75915" Q16773 7883047 MGI:1917516 RGD:1306912 600547 objectId:1445 "2.6.1.64|2.6.1.7|4.4.1.13" +HGNC:33238 KYAT3 kynurenine aminotransferase 3 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "RBM1|RP11-82K18.3|KAT3|KATIII" kynurenine--oxoglutarate transaminase 3 CCBL2 cysteine conjugate beta lyase 2 2007-01-04 2016-04-26 2016-04-26 2016-04-26 56267 ENSG00000137944 OTTHUMG00000010617 uc001dmp.3 AF091090 NM_001008661 "CCDS30766|CCDS30767" Q6YP21 16376499 MGI:2677849 RGD:1359262 610656 "2.6.1.7|2.6.1.63|4.4.1.13" +HGNC:6469 KYNU kynureninase protein-coding gene gene with protein product Approved 2q22.2 02q22.2 L-kynurenine hydrolase kynureninase (L-kynurenine hydrolase) 1999-09-20 2010-11-23 2014-11-19 8942 ENSG00000115919 OTTHUMG00000131829 uc002tvl.4 U57721 NM_001032998 "CCDS2183|CCDS33299" Q16719 "8706755|9180257" MGI:1918039 RGD:71061 KYNU 605197 168099 3.7.1.3 +HGNC:39199 KYNUP1 kynureninase pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 2010-11-23 2012-11-19 729321 ENSG00000261987 OTTHUMG00000178493 NG_022445 PGOHUM00000236956 +HGNC:39200 KYNUP2 kynureninase pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2010-11-23 2012-10-03 729310 ENSG00000265746 OTTHUMG00000178390 NG_022458 PGOHUM00000237270 +HGNC:39201 KYNUP3 kynureninase pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2010-11-23 2012-10-03 729323 ENSG00000263206 OTTHUMG00000059430 NG_022459 PGOHUM00000237271 +HGNC:6470 L1CAM L1 cell adhesion molecule protein-coding gene gene with protein product Approved Xq28 Xq28 CD171 "HSAS1|SPG1|HSAS|MASA|MIC5|S10" antigen identified by monoclonal antibody R1 "CD molecules|Fibronectin type III domain containing|I-set domain containing" "471|555|593" 1989-06-30 2003-04-07 2016-10-12 3897 ENSG00000198910 OTTHUMG00000024221 uc031tks.2 M74387 NM_024003 "CCDS14733|CCDS14734|CCDS48192" P32004 MGI:96721 RGD:619777 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=L1CAM|NGRL, Manchester LOVD|http://ngrl.man.ac.uk/lovd2/home.php?select_db=L1CAM|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/L1CAM/home.php?select_db=L1CAM|LRG_14|http://www.lrg-sequence.org/LRG/LRG_14" L1CAM 308840 122948 CD171 +HGNC:6686 L1RE1 LINE1 retrotransposable element 1 other transposable element Approved 22q12.1 22q12.1 L1.2 LRE1 LINE retrotransposable element 1 1991-05-15 2009-03-25 2009-03-25 2016-09-20 4029 M80343 Q9UN81 1662412 151626 +HGNC:6687 L1RE2 LINE1 retrotransposable element 2 other transposable element Approved 1q 01q "LRE4|LRE2" LINE retrotransposable element 2 1994-12-20 2009-03-25 2009-03-25 2009-05-15 4030 U09116 7920631 151628 +HGNC:16899 L1RE3 LINE1 retrotransposable element 3 other transposable element Approved 2q24 02q24 LRE3 2009-03-25 2009-05-15 12094329 +HGNC:37056 L1RE4 LINE1 retrotransposable element 4 other transposable element Approved 6p21 06p21 2009-03-25 2009-05-15 100272169 AC004200 17483097 +HGNC:25595 L1TD1 LINE1 type transposase domain containing 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "FLJ10884|ECAT11" 2006-05-19 2016-06-13 2016-06-13 54596 ENSG00000240563 OTTHUMG00000008914 uc001dae.6 BC060808 NM_019079 CCDS619 Q5T7N2 12477932 MGI:3578435 RGD:1595093 L1TD1 +HGNC:49127 L1TD1P1 LINE-1 type transposase domain containing 1 pseudogene 1 pseudogene pseudogene Approved 13q33.1 13q33.1 2013-09-09 2013-09-09 100126007 NG_006963 PGOHUM00000248488 +HGNC:20499 L2HGDH L-2-hydroxyglutarate dehydrogenase protein-coding gene gene with protein product Approved 14q21.3 14q21.3 FLJ12618 2-hydroxyglutarate dehydrogenase C14orf160 chromosome 14 open reading frame 160 2003-10-02 2005-05-25 2005-05-25 2016-10-05 79944 ENSG00000087299 OTTHUMG00000140289 uc010tqn.3 NM_024884 CCDS9698 Q9H9P8 16005139 MGI:2384968 RGD:1306250 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/vumc/home.php?select_db=L2HGDH L2HGDH 609584 122957 1.1.99.2 +HGNC:20488 L3HYPDH trans-L-3-hydroxyproline dehydratase protein-coding gene gene with protein product Approved 14q23.1 14q23.1 FLJ25436 C14orf149 "chromosome 14 open reading frame 149|L-3-hydroxyproline dehydratase (trans-)" 2004-06-11 2012-08-15 2016-03-24 2016-03-24 112849 ENSG00000126790 OTTHUMG00000028941 uc001xee.2 AI762327 NM_144581 CCDS9739 Q96EM0 22528483 MGI:1914467 RGD:1305721 614811 4.2.1.77 +HGNC:15905 L3MBTL1 l(3)mbt-like 1 (Drosophila) protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "ZC2HC3|dJ138B7.3|DKFZp586P1522|KIAA0681" lethal (3) malignant brain tumor l(3) L3MBTL "l(3)mbt (Drosophila)-like|l(3)mbt-like (Drosophila)" "Zinc fingers C2HC-type|Sterile alpha motif domain containing|MBT domain containing" "66|760|1263" 2001-06-21 2010-09-03 2010-09-03 2016-10-12 26013 ENSG00000185513 OTTHUMG00000032503 uc002xkl.4 U89358 NM_032107 "CCDS13319|CCDS46602" Q9Y468 "10445843|17540172" MGI:2676663 RGD:1307316 LRG_1049|http://www.lrg-sequence.org/LRG/LRG_1049 L3MBTL1 608802 +HGNC:18594 L3MBTL2 L3MBTL2 polycomb repressive complex 1 subunit protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "H-l(3)mbt-l|DKFZP761I141|dJ756G23.3" l(3)mbt-like 2 (Drosophila) MBT domain containing 1263 2002-04-29 2016-04-18 2016-10-05 83746 ENSG00000100395 OTTHUMG00000150942 uc003azo.4 AJ305226 NM_031488 CCDS14011 Q969R5 11682070 MGI:2443584 RGD:1308569 L3MBTL2 611865 +HGNC:23035 L3MBTL3 l(3)mbt-like 3 (Drosophila) protein-coding gene gene with protein product Approved 6q23.1 06q23.1 KIAA1798 "Sterile alpha motif domain containing|MBT domain containing" "760|1263" 2003-11-26 2016-10-05 84456 ENSG00000198945 OTTHUMG00000015554 uc003qbt.4 AB058701 XM_027074 "CCDS34537|CCDS34538" Q96JM7 MGI:2143628 RGD:1305474 L3MBTL3 objectId:2830 +HGNC:26677 L3MBTL4 l(3)mbt-like 4 (Drosophila) protein-coding gene gene with protein product Approved 18p11.31 18p11.31 "FLJ35936|HsT1031" "Sterile alpha motif domain containing|MBT domain containing" "760|1263" 2004-05-20 2016-10-05 91133 ENSG00000154655 OTTHUMG00000178980 uc002kmz.4 BC039316 NM_173464 "CCDS11839|CCDS82238" Q8NA19 14702039 MGI:2444889 RGD:1587524 L3MBTL4 617135 +HGNC:51320 L3MBTL4-AS1 L3MBTL4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 2014-10-02 2014-10-02 101927150 ENSG00000264707 OTTHUMG00000178852 BC040631 NR_110765 +HGNC:26789 LACC1 laccase domain containing 1 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "FLJ38725|FAMIN" fatty acid metabolism–immunity nexus C13orf31 "chromosome 13 open reading frame 31|laccase (multicopper oxidoreductase) domain containing 1" 2006-08-07 2011-08-09 2016-02-01 2016-08-05 144811 ENSG00000179630 OTTHUMG00000016826 uc010acg.4 AK096044 NM_153218 CCDS9391 Q8IV20 "16740638|22504414|27478939" MGI:2445077 RGD:1310185 613409 454001 +HGNC:16411 LACE1 lactation elevated 1 protein-coding gene gene with protein product Approved 6q21 06q21 AFG1 ATPase family gene 1 homolog (S. cerevisiae) 2002-06-07 2016-10-05 246269 ENSG00000135537 OTTHUMG00000015324 uc003psj.4 AF520418 NM_145315 CCDS5067 Q8WV93 12079282 MGI:2148801 RGD:1561501 LACE1 +HGNC:16430 LACRT lacritin protein-coding gene gene with protein product Approved 12q13.2 12q13.2 LACRITIN 2001-08-21 2014-06-13 90070 ENSG00000135413 OTTHUMG00000169936 uc001sgi.2 AF238867 NM_033277 CCDS8883 Q9GZZ8 11419941 LACRT 607360 +HGNC:16468 LACTB lactamase beta protein-coding gene gene with protein product Approved 15q22.2 15q22.2 FLJ14902 MRPL56 mitochondrial ribosomal protein L56 Mitochondrial ribosomal proteins 646 2001-08-30 2001-12-14 2015-11-23 2016-10-05 114294 ENSG00000103642 OTTHUMG00000132807 uc002alw.5 AK027808 NM_032857 "CCDS10182|CCDS45275" P83111 11707067 MGI:1933395 RGD:1304788 LACTB 608440 S12.004 +HGNC:18512 LACTB2 lactamase beta 2 protein-coding gene gene with protein product Approved 8q13.3 08q13.3 CGI-83 2004-02-09 2015-11-23 2015-11-23 51110 ENSG00000147592 OTTHUMG00000164430 uc033box.2 AF151841 NM_016027 CCDS6208 Q53H82 MGI:2442551 RGD:1307876 LACTB2 +HGNC:27841 LACTB2-AS1 LACTB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q13.3 08q13.3 2015-03-05 2015-03-05 286190 ENSG00000246366 OTTHUMG00000164429 NR_038881 +HGNC:35445 LACTBL1 lactamase beta like 1 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 2010-04-08 2015-11-23 2015-11-23 646262 ENSG00000215906 OTTHUMG00000003228 uc057dei.1 XM_002342035.1 A8MY62 MGI:2448566 +HGNC:6472 LAD1 ladinin 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 1998-02-20 2016-10-05 3898 ENSG00000159166 OTTHUMG00000035737 uc284muc.1 U42408 NM_005558 CCDS1410 O00515 "8618013|9119369" MGI:109343 RGD:1310652 LAD1 602314 +HGNC:6476 LAG3 lymphocyte activating 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 CD223 lymphocyte-activation gene 3 "CD molecules|Immunoglobulin like domain containing" "471|594" 1991-06-03 2016-01-21 2016-10-05 3902 ENSG00000089692 OTTHUMG00000169197 uc001qqt.5 NM_002286 CCDS8561 P18627 MGI:106588 RGD:1302990 LAG3 153337 CD223 +HGNC:26058 LAGE3 L antigen family member 3 protein-coding gene gene with protein product Approved Xq28 Xq28 "ITBA2|CVG5|DXS9951E|DXS9879E|ESO3|Pcc1" DNA segment on chromosome X (unique) 9879 expressed sequence L antigen family, member 3 2006-07-04 2015-11-18 2016-07-08 8270 ENSG00000196976 OTTHUMG00000033294 uc033fbs.1 X92896 NM_006014 CCDS14753 Q14657 "8786131|22912744" MGI:1913442 RGD:1562476 LAGE3 300060 +HGNC:49909 LAGE3P1 L antigen family member 3 pseudogene 1 pseudogene pseudogene Approved 9p21.1 09p21.1 L antigen family, member 3 pseudogene 1 2014-03-21 2015-11-18 2015-11-18 646808 ENSG00000225693 OTTHUMG00000019761 NG_030084 PGOHUM00000236011 +HGNC:6477 LAIR1 leukocyte associated immunoglobulin like receptor 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 CD305 "leukocyte-associated Ig-like receptor 1|leukocyte-associated immunoglobulin-like receptor 1" "CD molecules|Immunoglobulin like domain containing" "471|594" 1997-07-25 2016-01-21 2016-10-05 3903 ENSG00000167613 OTTHUMG00000065545 uc032idt.2 AF013249 XM_017026803 "CCDS12891|CCDS12892|CCDS74448|CCDS74449|CCDS74450" Q6GTX8 9285412 MGI:105492 RGD:1560048 LAIR1 602992 CD305 +HGNC:6478 LAIR2 leukocyte associated immunoglobulin like receptor 2 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 CD306 "leukocyte-associated Ig-like receptor 2|leukocyte-associated immunoglobulin-like receptor 2" "CD molecules|Immunoglobulin like domain containing" "471|594" 1997-07-25 2016-01-21 2016-10-05 3904 ENSG00000167618 OTTHUMG00000065697 uc002qgc.4 AF013250 XM_011526961 "CCDS12897|CCDS12898" Q6ISS4 9285412 LAIR2 602993 CD306 +HGNC:6479 LAKLG lymphokine-activated killer cell ligand phenotype phenotype only Approved 6 06 LAKL 1991-08-08 2005-01-10 2005-01-10 3905 153435 +HGNC:6480 LALBA lactalbumin alpha protein-coding gene gene with protein product Approved 12q13.11 12q13.11 LYZL7 lactalbumin, alpha- Lysozymes, c-type 1174 2001-06-22 2016-01-12 2016-01-12 3906 ENSG00000167531 OTTHUMG00000170391 uc001rrt.3 NM_002289 CCDS8765 P00709 MGI:96742 RGD:2987 LALBA 149750 +HGNC:6481 LAMA1 laminin subunit alpha 1 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 LAMA laminin, alpha 1 Laminin subunits 626 1989-05-25 2015-11-23 2016-10-05 284217 ENSG00000101680 OTTHUMG00000133478 uc002knm.3 X58531 NM_005559 CCDS32787 P25391 2591971 MGI:99892 RGD:1307207 LAMA1 150320 410692 +HGNC:6482 LAMA2 laminin subunit alpha 2 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 "merosin|congenital muscular dystrophy" LAMM laminin, alpha 2 Laminin subunits 626 1992-05-06 2015-11-23 2016-10-12 3908 ENSG00000196569 OTTHUMG00000015545 uc063rgy.1 Z26653 XM_005266981 CCDS5138 P24043 "2185464|8294519" MGI:99912 RGD:1308889 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/LAMA2|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=LAMA2|LRG_409|http://www.lrg-sequence.org/LRG/LRG_409" LAMA2 156225 122961 +HGNC:6483 LAMA3 laminin subunit alpha 3 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "nicein-150kDa|kalinin-165kDa|BM600-150kDa|epiligrin" LAMNA "laminin, alpha 3 (nicein (150kD), kalinin (165kD), BM600 (150kD), epilegrin)|laminin, alpha 3" Laminin subunits 626 1993-12-14 2015-11-23 2015-11-23 3909 ENSG00000053747 OTTHUMG00000131874 uc002kuq.4 L34155 "NM_000227|NM_198129" "CCDS11880|CCDS42419|CCDS45838|CCDS59307" Q16787 8077230 MGI:99909 RGD:628776 LAMA3 600805 122964 +HGNC:6484 LAMA4 laminin subunit alpha 4 protein-coding gene gene with protein product Approved 6q21 06q21 LAMA3 laminin, alpha 4 Laminin subunits 626 1993-07-26 2015-11-23 2016-10-12 3910 ENSG00000112769 OTTHUMG00000015386 uc003pvv.4 NM_001105206 "CCDS34514|CCDS43491|CCDS43492" Q16363 7959779 MGI:109321 RGD:1560062 LRG_433|http://www.lrg-sequence.org/LRG/LRG_433 LAMA4 600133 333071 +HGNC:6485 LAMA5 laminin subunit alpha 5 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 laminin, alpha 5 Laminin subunits 626 1997-10-30 2015-11-23 2016-10-05 3911 ENSG00000130702 OTTHUMG00000032908 uc002ycq.5 AF443072 NM_005560 CCDS33502 O15230 9271224 MGI:105382 RGD:621023 LAMA5 601033 +HGNC:40334 LAMA5-AS1 LAMA5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 2014-06-13 2014-11-19 101928158 ENSG00000228812 OTTHUMG00000032911 NR_109923 +HGNC:6486 LAMB1 laminin subunit beta 1 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 CLM "cutis laxa with marfanoid phenotype|laminin, beta 1" Laminin subunits 626 1986-01-01 2015-11-23 2016-10-05 3912 ENSG00000091136 OTTHUMG00000149966 uc003vew.3 M61916 NM_002291 CCDS5750 P07942 "2563160|2704655|1864606" MGI:96743 RGD:1306311 LAMB1 150240 356176 +HGNC:6487 LAMB2 laminin subunit beta 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 NPHS5 laminin S LAMS laminin, beta 2 (laminin S) Laminin subunits 626 1992-05-06 2015-11-23 2016-10-05 3913 ENSG00000172037 OTTHUMG00000156807 uc003cwf.2 NM_002292 CCDS2789 P55268 "2922051|10393422" MGI:99916 RGD:2988 LAMB2 150325 122971 +HGNC:6488 LAMB2P1 laminin subunit beta 2 pseudogene 1 pseudogene pseudogene Approved 3p21.3-p21.2 03p21.3-p21.2 LAMB2L "laminin, beta 2-like|laminin, beta 2 pseudogene 1" 1998-12-11 2010-10-28 2015-11-23 2015-11-23 22973 AJ009558 NR_004405 10393422 PGOHUM00000237622 +HGNC:6490 LAMB3 laminin subunit beta 3 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "nicein-125kDa|kalinin-140kDa|BM600-125kDa" LAMNB1 "laminin, beta 3 (nicein (125kD), kalinin (140kD), BM600 (125kD))|laminin, beta 3" Laminin subunits 626 1993-12-14 2015-11-23 2016-10-05 3914 ENSG00000196878 OTTHUMG00000036360 uc001hhh.4 D37766 NM_000228 CCDS1487 Q13751 "8088808|7774918" MGI:99915 RGD:1562668 LAMB3 150310 122974 +HGNC:6491 LAMB4 laminin subunit beta 4 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 laminin, beta 4 Laminin subunits 626 1998-10-19 2015-11-23 2016-10-05 22798 ENSG00000091128 OTTHUMG00000154874 uc003vey.3 AF028816 XM_209857 "CCDS34732|CCDS83218" A4D0S4 LAMB4 616380 +HGNC:6492 LAMC1 laminin subunit gamma 1 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 LAMB2 laminin, gamma 1 (formerly LAMB2) Laminin subunits 626 2001-06-22 2015-11-23 2016-10-05 3915 ENSG00000135862 OTTHUMG00000035418 uc001gpy.4 J03202 NM_002293 CCDS1351 P11047 3234037 MGI:99914 RGD:621052 LAMC1 150290 +HGNC:6493 LAMC2 laminin subunit gamma 2 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "nicein-100kDa|kalinin-105kDa|BM600-100kDa" "EBR2|LAMB2T|LAMNB2|EBR2A" "laminin, gamma 2 (nicein (100kD), kalinin (105kD), BM600 (100kD), Herlitz junctional epidermolysis bullosa))|laminin, gamma 2" Laminin subunits 626 1993-07-13 2015-11-23 2016-10-05 3918 ENSG00000058085 OTTHUMG00000035520 uc001gqa.3 Z15008 NM_005562 "CCDS1352|CCDS44285" Q13753 1383240 MGI:99913 RGD:621053 LAMC2 150292 122980 +HGNC:6494 LAMC3 laminin subunit gamma 3 protein-coding gene gene with protein product Approved 9q34.12 09q34.12 DKFZp434E202 laminin, gamma 3 Laminin subunits 626 1999-07-23 2015-11-23 2015-11-23 10319 ENSG00000050555 OTTHUMG00000020819 uc004caa.2 AF041835 NM_006059 CCDS6938 Q9Y6N6 10225960 MGI:1344394 RGD:1309399 LAMC3 604349 280647 +HGNC:6499 LAMP1 lysosomal associated membrane protein 1 protein-coding gene gene with protein product Approved 13q34 13q34 CD107a lysosomal-associated membrane protein 1 CD molecules 471 1990-07-15 2016-01-14 2016-01-14 3916 ENSG00000185896 OTTHUMG00000017380 uc001vtm.2 J03263 NM_005561 CCDS41909 P11279 MGI:96745 RGD:2989 LAMP1 153330 CD107a +HGNC:6500 LAMP1P1 lysosomal associated membrane protein 1 pseudogene 1 pseudogene pseudogene Approved 12p13.3 12p13.3 LAMP1L1 "lysosomal-associated membrane protein 1-like 1|lysosomal-associated membrane protein 1 pseudogene 1" 1990-09-10 2010-10-15 2016-01-14 2016-01-14 100421198 NG_023963 PGOHUM00000239292 +HGNC:6501 LAMP2 lysosomal associated membrane protein 2 protein-coding gene gene with protein product Approved Xq24 Xq24 CD107b lysosomal-associated membrane protein 2 CD molecules 471 1990-08-03 2016-01-14 2016-10-12 3920 ENSG00000005893 OTTHUMG00000022301 uc004ess.5 X77196 NM_002294 "CCDS14599|CCDS14600|CCDS48159" P13473 MGI:96748 RGD:2990 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=LAMP2|LRG_749|http://www.lrg-sequence.org/LRG/LRG_749" LAMP2 309060 122989 CD107b +HGNC:14582 LAMP3 lysosomal associated membrane protein 3 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "LAMP|TSC403|DC-LAMP|DCLAMP|CD208" lysosomal-associated membrane protein 3 CD molecules 471 2001-06-29 2016-01-14 2016-10-05 27074 ENSG00000078081 OTTHUMG00000158387 uc003flh.5 AB013924 XM_005247360 CCDS3242 Q9UQV4 9721848 MGI:2441659 RGD:1307928 LAMP3 605883 CD208 +HGNC:16097 LAMP5 lysosomal associated membrane protein family member 5 protein-coding gene gene with protein product Approved 20p12.2 20p12.2 "dJ1119D9.3|BAD-LAMP|UNC-46" brain and dendritic cell associated LAMP C20orf103 "chromosome 20 open reading frame 103|lysosomal-associated membrane protein family, member 5" 2001-07-17 2011-11-25 2015-11-17 2016-10-05 24141 ENSG00000125869 OTTHUMG00000031851 uc002wni.3 AL121740 NM_012261 "CCDS13106|CCDS56177" Q9UJQ1 "11780052|21642595" MGI:1923411 RGD:1306991 614641 +HGNC:40754 LAMP5-AS1 LAMP5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p12.2 20p12.2 2014-02-01 2014-11-19 101929329 ENSG00000225988 OTTHUMG00000031850 NR_109957 24488769 +HGNC:26068 LAMTOR1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "FLJ20625|p18|p27RF-Rho|Pdro|Ragulator1" "p27kip1 releasing factor from RhoA|protein associated with DRMs and endosomes" C11orf59 chromosome 11 open reading frame 59 Ragulator complex 1040 2006-03-09 2011-02-15 2011-02-15 2014-11-18 55004 ENSG00000149357 OTTHUMG00000167869 uc001ort.3 AK000632 NM_017907 CCDS8209 Q6IAA8 12358155 MGI:1913758 RGD:735078 LAMTOR1 613510 +HGNC:29796 LAMTOR2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 protein-coding gene gene with protein product Approved 1q22 01q22 "MAPBPIP|MAPKSP1AP|p14|ENDAP|Ragulator2" "mitogen activated protein binding protein interacting protein|MAPKSP1 adaptor protein|endosomal adaptor protein" ROBLD3 roadblock domain containing 3 Ragulator complex 1040 2008-09-16 2011-02-15 2011-02-15 2016-10-12 28956 ENSG00000116586 OTTHUMG00000017462 uc001fnb.4 BC024190 NM_014017 "CCDS1128|CCDS44243" Q9Y2Q5 11042152 MGI:1932697 RGD:1562501 "MAPBPIPbase: Mutation registry for endosomal adaptor protein p14 deficiency|http://structure.bmc.lu.se/idbase/MAPBPIPbase/|LRG_81|http://www.lrg-sequence.org/LRG/LRG_81" LAMTOR2 610389 165856 +HGNC:15606 LAMTOR3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding gene gene with protein product Approved 4q23 04q23 "MP1|MAPBP|Ragulator3" MEK partner 1 "MAP2K1IP1|MAPKSP1" "mitogen-activated protein kinase kinase 1 interacting protein 1|MAPK scaffold protein 1" Ragulator complex 1040 2001-05-22 2011-02-15 2011-02-15 2016-10-05 8649 ENSG00000109270 OTTHUMG00000131050 uc003hvg.3 AF201947 NM_021970 "CCDS3652|CCDS58920" Q9UHA4 "9733512|15016825" MGI:1929467 RGD:1307133 LAMTOR3 603296 +HGNC:39726 LAMTOR3P1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 1 pseudogene pseudogene Approved 13q13.3 13q13.3 2011-03-24 2011-03-24 100130119 ENSG00000228825 OTTHUMG00000016745 NG_008635 PGOHUM00000248569 +HGNC:39727 LAMTOR3P2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 2 pseudogene pseudogene Approved 5q23.1 05q23.1 2011-03-24 2011-03-24 100874516 ENSG00000248979 OTTHUMG00000162950 NG_032353 PGOHUM00000251328 +HGNC:33772 LAMTOR4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 C7orf59 chromosome 7 open reading frame 59 Ragulator complex 1040 2008-06-13 2012-09-24 2012-09-24 2016-10-05 389541 ENSG00000188186 OTTHUMG00000154854 uc003utq.3 NM_001008395 "CCDS34702|CCDS83210|CCDS83211" Q0VGL1 22980980 MGI:1913346 RGD:1309735 +HGNC:17955 LAMTOR5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "XIP|MGC71071" "HBx-interacting protein|hepatitis B virus x-interacting protein (9.6kD)" HBXIP hepatitis B virus x interacting protein Ragulator complex 1040 2002-01-10 2012-09-24 2012-09-24 2016-10-05 10542 ENSG00000134248 OTTHUMG00000011568 uc057jdz.1 AF029890 NM_006402 CCDS824 O43504 "9499022|22980980" MGI:1915826 RGD:1305005 608521 +HGNC:40823 LAMTOR5-AS1 LAMTOR5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p13.3 01p13.3 2012-09-24 2014-11-19 101410535 ENSG00000224699 OTTHUMG00000019824 uc057jep.1 "HY022359|BE547292|BG718030" NR_102697 +HGNC:31854 LAMTOR5P1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 pseudogene 1 pseudogene pseudogene Approved 1p31.3 01p31.3 HBXIPL hepatitis B virus x interacting protein-like HBXIPP1 hepatitis B virus x interacting protein pseudogene 1 2010-06-17 2012-09-24 2012-09-24 2014-11-18 106478910 ENSG00000236646 OTTHUMG00000008916 NG_044987 PGOHUM00000244738 +HGNC:6508 LANCL1 LanC like 1 protein-coding gene gene with protein product Approved 2q34 02q34 p40 GPR69A "LanC (bacterial lantibiotic synthetase component C)-like 1|LanC lantibiotic synthetase component C-like 1 (bacterial)" 1999-06-02 2016-01-06 2016-01-06 10314 ENSG00000115365 OTTHUMG00000132991 uc002ved.3 Y11395 NM_006055 CCDS2392 O43813 "9512664|22891245" MGI:1336997 RGD:69416 LANCL1 604155 +HGNC:50727 LANCL1-AS1 LANCL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q34 02q34 LANCLOT LANCL1 opposite transcript 2014-06-12 2014-06-12 102724820 ENSG00000234281 OTTHUMG00000154735 AA447268 NR_110606 +HGNC:6509 LANCL2 LanC like 2 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 TASP "testis-specific adriamycin sensitivity protein|G protein-coupled receptor 69B" GPR69B "LanC (bacterial lantibiotic synthetase component C)-like 2|LanC lantibiotic synthetase component C-like 2 (bacterial)" 1999-06-02 2016-01-06 2016-10-05 55915 ENSG00000132434 OTTHUMG00000023779 uc003tqp.3 AJ278245 NM_018697 CCDS5517 Q9NS86 "11762191|19667068" MGI:1919085 RGD:1310809 LANCL2 612919 +HGNC:24767 LANCL3 LanC like 3 protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 FLJ42925 LanC lantibiotic synthetase component C-like 3 (bacterial) 2005-01-12 2016-01-06 2016-01-06 347404 ENSG00000147036 OTTHUMG00000033177 uc011mkd.3 AK124915 NM_198511 "CCDS14240|CCDS55398" Q6ZV70 MGI:2443335 RGD:1563642 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=LANCL3 LANCL3 +HGNC:18449 LAP3 leucine aminopeptidase 3 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "LAPEP|LAP" PEPS peptidase S Aminopeptidases 104 2002-04-22 2003-09-12 2016-10-05 51056 ENSG00000002549 OTTHUMG00000048214 uc062vle.1 AF061738 NM_015907 CCDS3422 P28838 "6350155|689684" MGI:1914238 RGD:1307985 LAP3 170250 M17.001 objectId:1569 3.4.11.1 +HGNC:42364 LAP3P1 leucine aminopeptidase 3 pseudogene 1 pseudogene pseudogene Approved 6q14.1 06q14.1 2011-07-04 2014-11-18 100873864 ENSG00000220091 OTTHUMG00000015105 NG_032656 PGOHUM00000243268 +HGNC:42365 LAP3P2 leucine aminopeptidase 3 pseudogene 2 pseudogene pseudogene Approved 6p21.2 06p21.2 2011-07-04 2014-11-19 389386 ENSG00000213500 OTTHUMG00000014600 NG_022353 PGOHUM00000243608 +HGNC:6924 LAPTM4A lysosomal protein transmembrane 4 alpha protein-coding gene gene with protein product Approved 2p24.1 02p24.1 "HUMORF13|KIAA0108|Mtrp|LAPTM4" MBNT lysosomal-associated protein transmembrane 4 alpha 2000-07-31 2008-08-11 2014-11-19 9741 ENSG00000068697 OTTHUMG00000090750 uc002rdm.3 D14696 NM_014713 CCDS1696 Q15012 "8621662|7788527" MGI:108017 RGD:735179 LAPTM4A +HGNC:13646 LAPTM4B lysosomal protein transmembrane 4 beta protein-coding gene gene with protein product Approved 8q22.1 08q22.1 LC27 2002-12-16 2008-08-11 2008-08-11 55353 ENSG00000104341 OTTHUMG00000164740 uc064ovl.1 AF317417 NM_018407 CCDS6275 Q86VI4 MGI:1890494 RGD:1311853 LAPTM4B 613296 +HGNC:51934 LAPTM4BP1 lysosomal protein transmembrane 4 beta pseudogene 1 pseudogene pseudogene Approved 1q21.3 01q21.3 2015-10-07 2015-10-07 645900 ENSG00000237008 OTTHUMG00000013126 NG_022739 PGOHUM00000295899 +HGNC:51935 LAPTM4BP2 lysosomal protein transmembrane 4 beta pseudogene 2 pseudogene pseudogene Approved 3p13 03p13 2015-10-07 2015-10-07 107075219 ENSG00000271266 OTTHUMG00000184321 NG_046400 PGOHUM00000299469 +HGNC:29612 LAPTM5 lysosomal protein transmembrane 5 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 lysosomal multispanning membrane protein 5 2004-12-03 2009-07-20 2016-10-05 7805 ENSG00000162511 OTTHUMG00000003707 uc001bsc.3 U51240 NM_006762 CCDS337 Q13571 "8661146|12527926" MGI:108046 RGD:621838 LAPTM5 601476 +HGNC:40336 LARGE-AS1 LARGE antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q12.3 22q12.3 2013-05-17 2014-11-19 100506195 ENSG00000224973 OTTHUMG00000150916 NR_038949 +HGNC:41357 LARGE-IT1 LARGE intronic transcript 1 non-coding RNA RNA, long non-coding Approved 22q12.3 22q12.3 LARGE intronic transcript 1 (non-protein coding) 2011-09-22 2015-02-25 2015-02-25 100874331 ENSG00000232081 OTTHUMG00000150915 uc062dpd.1 +HGNC:6511 LARGE1 LARGE xylosyl- and glucuronyltransferase 1 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 KIAA0609 like-acetylglucosaminyltransferase LARGE like-glycosyltransferase Glycosyltransferase family 8 436 1999-06-02 2016-05-31 2016-05-31 2016-10-12 9215 ENSG00000133424 OTTHUMG00000150914 uc003and.5 AJ007583 NM_133642 CCDS13912 O95461 "9892679|12966029|22223806" MGI:1342270 RGD:1308895 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=LARGE|LRG_856|http://www.lrg-sequence.org/LRG/LRG_856" 603590 122992 +HGNC:16522 LARGE2 LARGE xylosyl- and glucuronyltransferase 2 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "PP5656|FLJ35207" GYLTL1B glycosyltransferase-like 1B Glycosyltransferase family 8 436 2005-09-09 2016-05-31 2016-05-31 2016-10-05 120071 ENSG00000165905 OTTHUMG00000167037 uc001nbv.1 NM_152312 "CCDS31473|CCDS76399" Q8N3Y3 "15661757|15958417" MGI:2443769 RGD:735214 609709 +HGNC:29531 LARP1 La ribonucleoprotein domain family member 1 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 "LARP|KIAA0731|MGC19556" La ribonucleoprotein domain family, member 1 La ribonucleoprotein domain containing 625 2005-06-16 2015-11-18 2015-11-18 23367 ENSG00000155506 OTTHUMG00000130191 uc003lvo.4 AB018274 NM_033551 CCDS4328 Q6PKG0 "9872452|10878606" MGI:1890165 RGD:1306683 LARP1 612059 +HGNC:24704 LARP1B La ribonucleoprotein domain family member 1B protein-coding gene gene with protein product Approved 4q28.2 04q28.2 "FLJ10378|DKFZp434K245|DKFZp686E0316" LARP2 "La ribonucleoprotein domain family, member 2|La ribonucleoprotein domain family, member 1B" La ribonucleoprotein domain containing 625 2005-06-16 2009-06-09 2015-11-18 2015-11-18 55132 ENSG00000138709 OTTHUMG00000133343 uc003iga.5 NM_018078 "CCDS3738|CCDS47133|CCDS64057" Q659C4 12045101 MGI:1914604 RGD:1307509 LARP1B +HGNC:37097 LARP1BP1 La ribonucleoprotein domain family member 1B pseudogene 1 pseudogene pseudogene Approved 4q13.1 04q13.1 La ribonucleoprotein domain family, member 1B pseudogene 1 2012-06-14 2015-11-18 2015-11-18 644578 ENSG00000231442 OTTHUMG00000160671 NG_028891 PGOHUM00000250769 +HGNC:44084 LARP1BP2 La ribonucleoprotein domain family member 1B pseudogene 2 pseudogene pseudogene Approved 7q22.3 07q22.3 La ribonucleoprotein domain family, member 1B pseudogene 2 2012-06-14 2015-11-18 2015-11-18 106479034 ENSG00000243438 OTTHUMG00000157589 NG_045004 PGOHUM00000233519 +HGNC:44085 LARP1BP3 La ribonucleoprotein domain family member 1B pseudogene 3 pseudogene pseudogene Approved Xq26.2 Xq26.2 La ribonucleoprotein domain family, member 1B pseudogene 3 2012-06-14 2015-11-18 2015-11-18 644403 ENSG00000232664 OTTHUMG00000022450 NG_022704 PGOHUM00000250088 +HGNC:23183 LARP1P1 La ribonucleoprotein domain family member 1 pseudogene 1 pseudogene pseudogene Approved 6p22.2 06p22.2 dJ221C16.7 HCG10P "HLA complex group 10 pseudogene|La ribonucleoprotein domain family, member 1 pseudogene 1" 2004-11-25 2012-06-14 2015-11-18 2016-10-05 100379623 ENSG00000217159 OTTHUMG00000014424 NG_029346 PGOHUM00000243519 +HGNC:24320 LARP4 La ribonucleoprotein domain family member 4 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 PP13296 La ribonucleoprotein domain family, member 4 La ribonucleoprotein domain containing 625 2005-06-16 2015-11-18 2016-04-25 113251 ENSG00000161813 OTTHUMG00000163724 uc001rwp.3 AY004310 NM_052879 "CCDS41782|CCDS44879|CCDS44880|CCDS53789|CCDS53790|CCDS81690" Q71RC2 12477932 MGI:2443114 RGD:6499275 LARP4 +HGNC:28987 LARP4B La ribonucleoprotein domain family member 4B protein-coding gene gene with protein product Approved 10p15.3 10p15.3 "KIAA0217|LARP5" "KIAA0217|La ribonucleoprotein domain family, member 5|La ribonucleoprotein domain family, member 4B" La ribonucleoprotein domain containing 625 2004-04-06 2009-06-09 2015-11-18 2015-11-18 23185 ENSG00000107929 OTTHUMG00000017534 uc031ptb.1 D86971 NM_015155 CCDS31131 Q92615 "9039502|20573744" MGI:106330 RGD:1310713 LARP4B 616513 +HGNC:21438 LARP4P La ribonucleoprotein domain family member 4 pseudogene pseudogene pseudogene Approved 15q14 15q14 La ribonucleoprotein domain family, member 4 pseudogene 2005-06-16 2015-11-18 2015-11-18 554354 ENSG00000261315 OTTHUMG00000172661 NG_016303 +HGNC:24012 LARP6 La ribonucleoprotein domain family member 6 protein-coding gene gene with protein product Approved 15q23 15q23 "acheron|FLJ11196" La ribonucleoprotein domain family, member 6 La ribonucleoprotein domain containing 625 2005-06-16 2015-11-18 2015-11-18 55323 ENSG00000166173 OTTHUMG00000172179 uc002ass.5 BC009446 NM_018357 "CCDS10236|CCDS32281" Q9BRS8 12477932 MGI:1914807 RGD:1308414 LARP6 611300 +HGNC:24912 LARP7 La ribonucleoprotein domain family member 7 protein-coding gene gene with protein product Approved 4q25 04q25 "HDCMA18P|PIP7S|DKFZP564K112" P-TEFb-interaction protein for 7SK stability La ribonucleoprotein domain family, member 7 "La ribonucleoprotein domain containing|RNA binding motif containing" "625|725" 2006-07-05 2015-11-18 2015-11-18 51574 ENSG00000174720 OTTHUMG00000132909 uc003iay.5 AF068284 NM_016648 "CCDS3701|CCDS58924" Q4G0J3 "18191186|18249148|18281698|22865833|22488152" MGI:107634 RGD:1592474 LARP7 612026 320199 +HGNC:49763 LARP7P1 La ribonucleoprotein domain family member 7 pseudogene 1 pseudogene pseudogene Approved 1q32.1 01q32.1 La ribonucleoprotein domain family, member 7 pseudogene 1 2014-02-14 2015-11-18 2015-11-18 106480287 ENSG00000271588 OTTHUMG00000184464 NG_044157 PGOHUM00000244394 +HGNC:49764 LARP7P2 La ribonucleoprotein domain family member 7 pseudogene 2 pseudogene pseudogene Approved 16p12.3 16p12.3 La ribonucleoprotein domain family, member 7 pseudogene 2 2014-02-14 2015-11-18 2015-11-18 106481699 ENSG00000261939 OTTHUMG00000177625 NG_043198 PGOHUM00000248749 +HGNC:49765 LARP7P3 La ribonucleoprotein domain family member 7 pseudogene 3 pseudogene pseudogene Approved 18q22.2 18q22.2 La ribonucleoprotein domain family, member 7 pseudogene 3 2014-02-14 2015-11-18 2015-11-18 106481700 ENSG00000265698 OTTHUMG00000178697 NG_043207 PGOHUM00000235095 +HGNC:49766 LARP7P4 La ribonucleoprotein domain family member 7 pseudogene 4 pseudogene pseudogene Approved 3q24 03q24 La ribonucleoprotein domain family, member 7 pseudogene 4 2014-02-14 2015-11-18 2015-11-18 100421509 ENSG00000244024 OTTHUMG00000159390 NG_025752 PGOHUM00000250309 +HGNC:6512 LARS leucyl-tRNA synthetase protein-coding gene gene with protein product Approved 5q32 05q32 "HSPC192|FLJ10595|FLJ21788|LARS1|LEUS|RNTLS" leucine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class I 131 2001-06-22 2014-11-19 51520 ENSG00000133706 OTTHUMG00000163429 uc003lnx.2 AF151026 NM_020117 "CCDS34265|CCDS83029" Q9P2J5 6933703 MGI:1913808 RGD:1304962 LARS 151350 376888 6.1.1.4 +HGNC:17095 LARS2 leucyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "KIAA0028|LEURS|MGC26121|mtLeuRS" leucine tRNA ligase 2, mitochondrial Aminoacyl tRNA synthetases, Class I 131 2003-09-01 2016-03-14 2016-10-05 23395 ENSG00000011376 OTTHUMG00000133177 uc062ixh.1 AJ312685 NM_015340 CCDS2728 Q15031 "20194621|15123417|10684970" MGI:2142973 RGD:1308429 LARS2 604544 331972 6.1.1.4 +HGNC:40796 LARS2-AS1 LARS2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 LARS2 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100885795 ENSG00000232455 OTTHUMG00000156654 uc031rzd.2 NR_048543 +HGNC:25726 LAS1L LAS1 like, ribosome biogenesis factor protein-coding gene gene with protein product Approved Xq12 Xq12 FLJ12525 LAS1-like (S. cerevisiae) 5FMC ribosome biogenesis complex 1301 2005-01-26 2016-06-13 2016-06-13 81887 ENSG00000001497 OTTHUMG00000021720 uc004dwa.3 BC014545 NM_031206 "CCDS14381|CCDS55433|CCDS55434" Q9Y4W2 22190735 MGI:1923380 RGD:1565755 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=LAS1L LAS1L 300964 406910 +HGNC:6513 LASP1 LIM and SH3 protein 1 protein-coding gene gene with protein product Approved 17q12 17q12 "MLN50|Lasp-1" LIM domain containing 1218 1997-05-22 2016-10-05 3927 ENSG00000002834 OTTHUMG00000133182 uc002hra.3 NM_006148 "CCDS11331|CCDS62164" Q14847 "7490069|25622104" MGI:109656 RGD:68408 LASP1 602920 +HGNC:18874 LAT linker for activation of T-cells protein-coding gene gene with protein product Approved 16q13 16q13 LAT1 linker for activation of T cells, transmembrane adaptor linker for activation of T cells 2002-07-12 2015-11-13 2015-11-13 27040 ENSG00000213658 OTTHUMG00000131761 uc002dsd.4 AF036905 NM_014387 "CCDS10647|CCDS32425|CCDS45455|CCDS53999" O43561 9489702 MGI:1342293 RGD:620802 LAT 602354 +HGNC:12749 LAT2 linker for activation of T-cells family member 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "WSCR5|HSPC046|LAB|NTAL" "linker for activation of B cells|non-T cell activation linker|linker for activation of T cells, transmembrane adaptor 2" "WBSCR15|WBSCR5" "Williams-Beuren syndrome chromosome region 5|linker for activation of T cells family, member 2" 1997-09-12 2005-04-26 2015-11-13 2016-02-03 7462 ENSG00000086730 OTTHUMG00000130151 uc003uai.4 AF257135 XM_011516558 CCDS5566 Q9GZY6 "8812460|12514734" MGI:1926479 RGD:631397 LAT2 605719 +HGNC:6514 LATS1 large tumor suppressor kinase 1 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 WARTS "LATS (large tumor suppressor, Drosophila) homolog 1|LATS, large tumor suppressor, homolog 1 (Drosophila)" 1999-02-18 2013-04-25 2014-11-19 9113 ENSG00000131023 OTTHUMG00000016437 uc003qmu.2 AF104413 NM_004690 "CCDS34551|CCDS59040" O95835 "9988268|15122335" MGI:1333883 RGD:1564085 LATS1 603473 objectId:1515 +HGNC:6515 LATS2 large tumor suppressor kinase 2 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "LATS (large tumor suppressor, Drosophila) homolog 2|LATS, large tumor suppressor, homolog 2 (Drosophila)" 1999-12-07 2013-04-25 2015-09-03 26524 ENSG00000150457 OTTHUMG00000016531 uc001unr.6 AB028019 XM_011535042 CCDS9294 Q9NRM7 10673337 MGI:1354386 RGD:1305906 LATS2 604861 objectId:1516 +HGNC:39912 LATS2-AS1 LATS2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 LATS2 antisense RNA 1 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100874066 ENSG00000233851 OTTHUMG00000016527 uc058vus.1 +HGNC:26005 LAX1 lymphocyte transmembrane adaptor 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "LAX|FLJ20340" "LAT-like membrane associated protein|linker for activation of x cells" 2005-04-25 2014-11-19 54900 ENSG00000122188 OTTHUMG00000035908 uc001haa.4 AK000347 NM_017773 "CCDS1441|CCDS44297" Q8IWV1 12359715 MGI:2443362 RGD:1563522 LAX1 +HGNC:29471 LAYN layilin protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "FLJ30977|FLJ31092" C-type lectin domain containing 1298 2005-11-14 2014-11-19 143903 ENSG00000204381 OTTHUMG00000166721 uc001plp.3 NM_178834 "CCDS31676|CCDS58178|CCDS58179" Q6UX15 15913605 MGI:2685357 RGD:1564444 LAYN +HGNC:29532 LBH limb bud and heart development protein-coding gene gene with protein product Approved 2p23.1 02p23.1 limb bud and heart development homolog (mouse) 2006-10-13 2012-12-07 2014-11-19 81606 ENSG00000213626 OTTHUMG00000152051 uc002rne.3 AF110224 NM_030915 CCDS33173 Q53QV2 "11230166|11336496" MGI:1925139 RGD:1584525 LBH 611763 +HGNC:28351 LBHD1 LBH domain containing 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 MGC2477 C11orf48 chromosome 11 open reading frame 48 2005-12-22 2014-10-09 2014-10-09 2015-03-03 79081 ENSG00000162194 OTTHUMG00000187541 BC001434 NM_024099 CCDS8028 Q9BQE6 12477932 MGI:5516029 RGD:7607090 +HGNC:6517 LBP lipopolysaccharide binding protein protein-coding gene gene with protein product Approved 20q11.23 20q11.23 BPIFD2 BPI fold containing family D, member 2 lipopolysaccharide-binding protein BPI fold containing 456 1992-03-13 2001-11-28 2014-11-18 3929 ENSG00000129988 OTTHUMG00000032447 uc002xic.3 NM_004139 CCDS13304 P18428 8432532 MGI:1098776 RGD:61865 LBP 151990 +HGNC:6518 LBR lamin B receptor protein-coding gene gene with protein product Approved 1q42.12 01q42.12 "DHCR14B|TDRD18" tudor domain containing 18 Tudor domain containing 780 1995-04-27 2016-10-05 3930 ENSG00000143815 OTTHUMG00000037520 uc001hoz.4 L25931 NM_002296 CCDS1545 Q14739 "8157663|9878250" MGI:2138281 RGD:620813 LBR 600024 123003 +HGNC:16960 LBX1 ladybird homeobox 1 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "LBX1H|HPX6" ladybird homeobox homolog 1 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 2005-04-28 2007-02-15 2014-11-18 10660 ENSG00000138136 OTTHUMG00000018927 uc001ksx.4 X90828 NM_006562 CCDS31270 P52954 8645601 MGI:104867 RGD:1564197 LBX1 604255 8452 +HGNC:48678 LBX1-AS1 LBX1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 10q24.32 10q24.32 FLJ41350 2013-06-06 2015-01-30 399806 ENSG00000227128 OTTHUMG00000170500 "AK096698|AK123344|AK294034" NR_029380 +HGNC:15525 LBX2 ladybird homeobox 2 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 ladybird homeobox homolog 2 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 2001-06-26 2007-02-15 2015-08-25 85474 ENSG00000179528 OTTHUMG00000170595 uc061kxh.1 AC005041 NM_001009812 "CCDS33228|CCDS62938" Q6XYB7 11386758 MGI:1342288 RGD:1561172 LBX2 607164 8412 +HGNC:25136 LBX2-AS1 LBX2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p13.1 02p13.1 LBX2 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2014-06-09 151534 ENSG00000257702 OTTHUMG00000170509 uc061kxm.1 "AK125271|AK096725" NR_024606 24905231 +HGNC:31923 LCA5 LCA5, lebercilin protein-coding gene gene with protein product Approved 6q14.1 06q14.1 C6orf152 "chromosome 6 open reading frame 152|Leber congenital amaurosis 5" 2005-02-23 2016-05-24 2016-10-05 167691 ENSG00000135338 OTTHUMG00000015080 uc003piy.3 NM_181714 CCDS4990 Q86VQ0 "10631161|17546029" MGI:1923032 RGD:1308555 LCA5 611408 140526 +HGNC:1255 LCA5L LCA5L, lebercilin like protein-coding gene gene with protein product Approved 21q22.2 21q22.2 MGC33295 C21orf13 "chromosome 21 open reading frame 13|Leber congenital amaurosis 5-like" 2000-05-23 2007-12-18 2016-05-24 2016-05-24 150082 ENSG00000157578 OTTHUMG00000066280 uc062afa.1 AF121781 NM_152505 CCDS13665 O95447 MGI:3041157 RGD:1562512 LCA5L +HGNC:25837 LCAL1 lung cancer associated lncRNA 1 non-coding RNA RNA, long non-coding Approved 6q14.1 06q14.1 onco-lncRNA-27 Long non-coding RNAs 788 2015-07-29 2015-07-29 80078 NR_130915 "25116943|25864709" +HGNC:6522 LCAT lecithin-cholesterol acyltransferase protein-coding gene gene with protein product Approved 16q22.1 16q22.1 phosphatidylcholine--sterol O-acyltransferase 2001-06-22 2015-12-04 3931 ENSG00000213398 OTTHUMG00000137551 uc002euy.2 NM_000229 CCDS10854 P04180 MGI:96755 RGD:2993 LCAT 606967 123006 2.3.1.43 +HGNC:29459 LCE1A late cornified envelope 1A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP1 Late cornified envelope proteins 627 2004-10-11 2015-09-03 353131 ENSG00000186844 OTTHUMG00000012447 uc010pdw.3 NM_178348 CCDS1028 Q5T7P2 11698679 LCE1A 612603 +HGNC:16611 LCE1B late cornified envelope 1B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP2 SPRL2A small proline rich-like (epidermal differentiation complex) 2A Late cornified envelope proteins 627 2001-10-26 2004-10-15 2004-10-11 2015-09-03 353132 ENSG00000196734 OTTHUMG00000014402 uc001faq.3 BI670515 NM_178349 CCDS1027 Q5T7P3 11698679 RGD:1585474 LCE1B 612604 +HGNC:29464 LCE1C late cornified envelope 1C protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP3 Late cornified envelope proteins 627 2004-10-11 2015-09-03 353133 ENSG00000197084 OTTHUMG00000012445 uc031uzj.2 NM_178351 CCDS1026 Q5T751 11698679 LCE1C 612605 +HGNC:29465 LCE1D late cornified envelope 1D protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP4 Late cornified envelope proteins 627 2004-10-11 2015-09-03 353134 ENSG00000172155 OTTHUMG00000012444 uc009wnp.3 NM_178352 CCDS1025 Q5T752 11698679 RGD:1587794 LCE1D 612606 +HGNC:29466 LCE1E late cornified envelope 1E protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP5 Late cornified envelope proteins 627 2004-10-11 2015-09-03 353135 ENSG00000186226 OTTHUMG00000012405 uc001fan.4 BC038391 NM_178353 CCDS1024 Q5T753 11698679 LCE1E 612607 +HGNC:29467 LCE1F late cornified envelope 1F protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP6 Late cornified envelope proteins 627 2004-10-11 2015-09-03 353137 ENSG00000240386 OTTHUMG00000012403 uc010pdv.3 NM_178354 CCDS1023 Q5T754 11698679 RGD:1565626 LCE1F 612608 +HGNC:29469 LCE2A late cornified envelope 2A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP9 Late cornified envelope proteins 627 2004-10-11 2014-11-18 353139 ENSG00000187173 OTTHUMG00000012392 uc001faj.3 NM_178428 CCDS1021 Q5TA79 11698679 LCE2A 612609 +HGNC:16610 LCE2B late cornified envelope 2B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "LEP10|XP5" SPRL1B small proline rich-like (epidermal differentiation complex) 1B Late cornified envelope proteins 627 2001-10-26 2004-10-15 2004-10-11 2016-10-05 26239 ENSG00000159455 OTTHUMG00000012404 uc001fai.4 BI670514 NM_014357 CCDS1020 O14633 "11698679|9344646" LCE2B 612610 +HGNC:29460 LCE2C late cornified envelope 2C protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP11 Late cornified envelope proteins 627 2004-10-11 2014-11-19 353140 ENSG00000187180 OTTHUMG00000012389 uc001fah.5 NM_178429 CCDS1019 Q5TA81 11698679 LCE2C 612611 +HGNC:16518 LCE2D late cornified envelope 2D protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP12 SPRL1A small proline rich-like (epidermal differentiation complex) 1A Late cornified envelope proteins 627 2001-10-26 2004-10-15 2004-10-11 2014-11-18 353141 ENSG00000187223 OTTHUMG00000014400 uc001fag.5 BI670513 NM_178430 CCDS1018 Q5TA82 11698679 LCE2D 612612 +HGNC:29461 LCE3A late cornified envelope 3A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP13 Late cornified envelope proteins 627 2004-10-11 2015-09-03 353142 ENSG00000185962 OTTHUMG00000012397 uc010pdt.2 NM_178431 CCDS1017 Q5TA76 11698679 LCE3A 612613 +HGNC:29462 LCE3B late cornified envelope 3B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP14 Late cornified envelope proteins 627 2004-10-11 2015-09-03 353143 ENSG00000187238 OTTHUMG00000012395 uc010pds.2 NM_178433 CCDS1016 Q5TA77 11698679 RGD:2319129 LCE3B 612614 +HGNC:16612 LCE3C late cornified envelope 3C protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP15 SPRL3A small proline rich-like (epidermal differentiation complex) 3A Late cornified envelope proteins 627 2001-10-26 2004-10-15 2015-09-03 353144 ENSG00000244057 OTTHUMG00000014403 uc001fac.2 BI670516 NM_178434 CCDS1015 Q5T5A8 11698679 LCE3C 612615 +HGNC:16615 LCE3D late cornified envelope 3D protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP16 "SPRL6B|SPRL6A" small proline rich-like (epidermal differentiation complex) 6B Late cornified envelope proteins 627 2001-10-26 2004-10-15 2004-05-21 2016-10-05 84648 ENSG00000163202 OTTHUMG00000012384 uc001fab.4 BI670519 NM_032563 CCDS1014 Q9BYE3 11698679 LCE3D 612616 +HGNC:29463 LCE3E late cornified envelope 3E protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP17 Late cornified envelope proteins 627 2004-10-11 2015-09-03 353145 ENSG00000185966 OTTHUMG00000012393 uc001faa.5 NM_178435 CCDS1013 Q5T5B0 11698679 LCE3E 612617 +HGNC:16613 LCE4A late cornified envelope 4A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP8 SPRL4A small proline rich-like (epidermal differentiation complex) 4A Late cornified envelope proteins 627 2001-10-26 2004-10-15 2004-10-11 2016-10-05 199834 ENSG00000187170 OTTHUMG00000014394 uc057lag.1 BI670517 NM_178356 CCDS1022 Q5TA78 11698679 LCE4A 612618 +HGNC:16614 LCE5A late cornified envelope 5A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP18 SPRL5A small proline rich-like (epidermal differentiation complex) 5A Late cornified envelope proteins 627 2001-10-26 2004-10-15 2004-10-11 2014-11-19 254910 ENSG00000186207 OTTHUMG00000014401 uc001ezy.3 BI670518 NM_178438 CCDS1011 Q5TCM9 11698679 RGD:1587778 LCE5A 612619 +HGNC:31824 LCE6A late cornified envelope 6A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 C1orf44 chromosome 1 open reading frame 44 Late cornified envelope proteins 627 2004-09-16 2006-09-18 2006-09-18 2015-09-03 448835 ENSG00000235942 OTTHUMG00000012448 uc001fas.5 DQ991251 XM_017001327 CCDS44227 A0A183 MGI:1925632 RGD:2319721 LCE6A +HGNC:31806 LCEP1 late cornified envelope pseudogene 1 pseudogene pseudogene Approved 1q21.3 01q21.3 2004-10-11 2014-11-18 450208 NG_006116 15854049 +HGNC:31807 LCEP2 late cornified envelope pseudogene 2 pseudogene pseudogene Approved 1q21.3 01q21.3 2004-10-11 2014-11-19 450209 NG_006117 15854049 +HGNC:31809 LCEP3 late cornified envelope pseudogene 3 pseudogene pseudogene Approved 1q22 01q22 2004-10-11 2010-09-22 450211 NG_006119 15854049 +HGNC:31808 LCEP4 late cornified envelope pseudogene 4 pseudogene pseudogene Approved 1q21.3 01q21.3 2004-10-11 2014-11-18 450210 NG_006118 15854049 +HGNC:6524 LCK LCK proto-oncogene, Src family tyrosine kinase protein-coding gene gene with protein product Approved 1p35.2 01p35.2 lymphocyte-specific protein tyrosine kinase SH2 domain containing 741 1986-01-01 2014-06-25 2016-10-12 3932 ENSG00000182866 OTTHUMG00000007463 uc001bux.3 M36881 NM_005356 CCDS359 P06239 2787474 MGI:96756 RGD:2994 LRG_153|http://www.lrg-sequence.org/LRG/LRG_153 LCK 153390 280151 objectId:2053 2.7.10.1 +HGNC:26756 LCLAT1 lysocardiolipin acyltransferase 1 protein-coding gene gene with protein product Approved 2p23.1 02p23.1 "FLJ37965|ALCAT1|AGPAT8" LYCAT lysocardiolipin acyltransferase 1-acylglycerol-3-phosphate O-acyltransferases 46 2004-10-28 2008-12-15 2008-12-15 2014-11-19 253558 ENSG00000172954 OTTHUMG00000099349 uc002rnl.4 AK095284 NM_182551 "CCDS1772|CCDS42670" Q6UWP7 "18931347|15152008|16620771|17675553" MGI:2684937 RGD:1565906 LCLAT1 614241 +HGNC:17557 LCMT1 leucine carboxyl methyltransferase 1 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "CGI-68|PPMT1" "protein phosphatase methyltransferase 1|[phosphatase 2A protein]-leucine-carboxy methyltransferase" Protein phosphatase 2 modulatory subunits 1265 2003-01-29 2015-12-04 51451 ENSG00000205629 OTTHUMG00000177182 uc002dnx.2 AF037601 NM_016309 "CCDS45445|CCDS45446" Q9UIC8 10810093 MGI:1353593 RGD:735118 LCMT1 610286 2.1.1.233 +HGNC:51177 LCMT1-AS1 LCMT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p12.1 16p12.1 2014-08-01 2014-08-01 102723510 ENSG00000260448 OTTHUMG00000177185 NR_120306 +HGNC:51178 LCMT1-AS2 LCMT1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 16p12.1 16p12.1 2014-08-01 2014-08-01 100506655 ENSG00000260034 OTTHUMG00000177183 NR_039998 +HGNC:17558 LCMT2 leucine carboxyl methyltransferase 2 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "KIAA0547|MGC9534|TYW4|PPM2" tRNA-yW synthesizing protein 4 2003-01-29 2014-11-19 9836 ENSG00000168806 OTTHUMG00000130705 uc001zrg.4 AF265443 NM_014793 CCDS10094 O60294 "9628581|17150819" MGI:1353659 RGD:1305829 LCMT2 611246 +HGNC:6525 LCN1 lipocalin 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "VEGP|TP|PMFA|MGC71975|TLC" "Von Ebner gland protein|tear lipocalin|lipocalin 1-like 2|tear prealbumin" "lipocalin 1 (protein migrating faster than albumin, tear prealbumin)|lipocalin 1 (tear prealbumin)" Lipocalins 631 1993-05-03 2011-11-01 2016-10-05 3933 ENSG00000160349 OTTHUMG00000020908 uc004cfz.3 NM_002297 CCDS6991 P31025 8276406 RGD:619872 LCN1 151675 +HGNC:23412 LCN1P1 lipocalin 1 pseudogene 1 pseudogene pseudogene Approved 9q34.2 09q34.2 bA430N14.2 LCN1L1 lipocalin 1-like 1 2004-05-27 2010-10-19 2010-10-19 2014-11-19 286310 ENSG00000119440 OTTHUMG00000020859 NG_022883 Q5VSP4 PGOHUM00000236343 +HGNC:23680 LCN1P2 lipocalin 1 pseudogene 2 pseudogene pseudogene Approved 9q34.2 09q34.2 bA244N20.11 LCN1L2 lipocalin 1-like 2 2005-12-22 2010-10-19 2010-10-19 2014-11-19 653163 ENSG00000204031 OTTHUMG00000020863 NG_009693 PGOHUM00000236783 +HGNC:6526 LCN2 lipocalin 2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "NGAL|24p3" "oncogene 24p3|neutrophil gelatinase-associated lipocalin|siderocalin" lipocalin 2 (oncogene 24p3) Lipocalins 631 1994-04-29 2007-12-18 2016-10-05 3934 ENSG00000148346 OTTHUMG00000020734 uc064wbc.1 NM_005564 CCDS6892 P80188 7683678 MGI:96757 RGD:69408 LCN2 600181 +HGNC:17337 LCN6 lipocalin 6 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 Lipocalins 631 2002-01-11 2015-09-03 158062 ENSG00000267206 OTTHUMG00000020941 uc004ciy.4 AF303084 NM_198946 CCDS7005 P62502 MGI:3045364 RGD:1302986 LCN6 609379 +HGNC:27038 LCN8 lipocalin 8 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 LCN5 "chromosome 9 open reading frame 137|lipocalin 5" Lipocalins 631 2005-01-11 2005-01-11 2014-11-19 138307 ENSG00000204001 OTTHUMG00000020942 uc004cjb.2 AK124003 NM_178469 CCDS35183 Q6JVE9 MGI:2135945 RGD:1306747 LCN8 612902 +HGNC:17442 LCN9 lipocalin 9 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "MUP-like lipocalin|epididymal-specific lipocalin-9" Lipocalins 631 2005-01-11 2016-10-05 392399 ENSG00000148386 OTTHUMG00000020916 uc064wzo.1 AY301270 NM_001001676 CCDS56593 Q8WX39 15363845 MGI:1924954 RGD:1306341 LCN9 612903 +HGNC:20892 LCN10 lipocalin 10 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 Lipocalins 631 2005-01-11 2011-10-24 414332 ENSG00000187922 OTTHUMG00000150428 uc004civ.4 AY301271 NM_001001712 CCDS35182 Q6JVE6 15363845 MGI:1925000 RGD:1564362 LCN10 612904 +HGNC:28733 LCN12 lipocalin 12 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 MGC48935 Lipocalins 631 2005-01-11 2007-12-18 2016-10-05 286256 ENSG00000184925 OTTHUMG00000020968 uc004ckb.4 BC041168 NM_178536 CCDS7018 Q6JVE5 15363845 MGI:1924951 RGD:1589474 LCN12 612905 +HGNC:33777 LCN15 lipocalin 15 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "UNQ2541|PRO6093" Lipocalins 631 2009-02-27 2015-09-03 389812 ENSG00000177984 OTTHUMG00000020943 uc004cjd.3 NM_203347 CCDS7006 Q6UWW0 MGI:5592908 LCN15 +HGNC:34436 LCNL1 lipocalin like 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 FLJ45224 2009-02-27 2016-06-13 2016-06-13 401562 ENSG00000214402 OTTHUMG00000159546 uc004ckh.2 NM_207510 CCDS43908 Q6ZST4 LCNL1 +HGNC:29503 LCOR ligand dependent nuclear receptor corepressor protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "MLR2|FLJ38026|KIAA1795" 2006-06-14 2016-10-05 84458 ENSG00000196233 OTTHUMG00000018841 uc021pwp.2 XM_006718033 "CCDS7451|CCDS53561" Q96JN0 "12535528|15193453" MGI:2443930 RGD:1311704 LCOR 607698 +HGNC:30776 LCORL ligand dependent nuclear receptor corepressor like protein-coding gene gene with protein product Approved 4p15.31 04p15.31 "MLR1|FLJ30696" ligand dependent nuclear receptor corepressor-like 2006-06-14 2015-11-13 2016-10-05 254251 ENSG00000178177 OTTHUMG00000128538 uc021xmr.2 NM_153686 "CCDS3425|CCDS54749" Q8N3X6 12560079 MGI:2651932 RGD:1561241 LCORL 611799 +HGNC:6528 LCP1 lymphocyte cytosolic protein 1 protein-coding gene gene with protein product Approved 13q14.13 13q14.13 "PLS2|CP64|L-PLASTIN|LC64P" plastin 2 lymphocyte cytosolic protein 1 (L-plastin) EF-hand domain containing 863 1986-01-01 2016-04-05 2016-10-05 3936 ENSG00000136167 OTTHUMG00000016864 uc058wwe.1 M22300 NM_002298 CCDS9403 P13796 2111166 MGI:104808 RGD:1308288 LCP1 153430 +HGNC:6529 LCP2 lymphocyte cytosolic protein 2 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 SLP-76 "76 kDa tyrosine phosphoprotein|SH2 domain-containing leukocyte protein of 76kD" SLP76 "lymphocyte cytosolic protein 2 (SH2 domain-containing leukocyte protein of 76kD)|lymphocyte cytosolic protein 2 (SH2 domain containing leukocyte protein of 76kDa)" SH2 domain containing 741 1996-03-12 2015-11-10 2015-11-10 3937 ENSG00000043462 OTTHUMG00000163121 uc003man.2 NM_005565 CCDS47339 Q13094 7706237 MGI:1321402 RGD:619743 LCP2 601603 +HGNC:15737 LCS1 lymphedema-cholestasis syndrome 1 phenotype phenotype only Approved 15q 15q "CHSL|LCS" 2001-05-24 2011-02-10 84565 10968776 214900 +HGNC:6530 LCT lactase protein-coding gene gene with protein product Approved 2q21.3 02q21.3 1989-05-29 2016-10-12 3938 ENSG00000115850 OTTHUMG00000131738 uc002tuu.2 X07994 NM_002299 CCDS2178 P09848 MGI:104576 RGD:620823 LRG_338|http://www.lrg-sequence.org/LRG/LRG_338 LCT 603202 123008 "3.2.1.108|3.2.1.62" +HGNC:15583 LCTL lactase like protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "KLPH|FLJ33279|KLG" "klotho gamma|KL lactase phlorizin hydrolase" 2005-07-26 2015-11-23 2016-10-05 197021 ENSG00000188501 OTTHUMG00000133207 uc002aqc.5 AY358729 NM_207338 "CCDS10220|CCDS61678" Q6UWM7 12084582 MGI:2183549 RGD:1305177 LCTL 617060 +HGNC:26145 LDAH lipid droplet associated hydrolase protein-coding gene gene with protein product Approved 2p24.1 02p24.1 FLJ21820 C2orf43 chromosome 2 open reading frame 43 2006-07-26 2015-03-26 2015-03-26 2015-03-26 60526 ENSG00000118961 OTTHUMG00000122097 AK025473 NM_021925 "CCDS1702|CCDS62864|CCDS74488|CCDS74489|CCDS62865" Q9H6V9 "17135363|24357060" MGI:1916082 RGD:1311648 613570 +HGNC:6532 LDB1 LIM domain binding 1 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "NLI|CLIM2" carboxy terminal LIM domain protein 2 1999-01-22 2016-10-05 8861 ENSG00000198728 OTTHUMG00000018950 uc001kuk.6 AF068652 NM_001113407 "CCDS7528|CCDS44472" Q86U70 "9503020|9799849" MGI:894762 RGD:1310359 LDB1 603451 +HGNC:6533 LDB2 LIM domain binding 2 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "CLIM1|LDB1" 1999-01-22 2016-10-05 9079 ENSG00000169744 OTTHUMG00000048212 uc003goz.5 AF068651 XM_006713975 "CCDS3420|CCDS47031|CCDS77902|CCDS77903" O43679 "9853615|9880598|10861853" MGI:894670 RGD:1307921 LDB2 603450 +HGNC:15710 LDB3 LIM domain binding 3 protein-coding gene gene with protein product Approved 10q23.2 10q23.2 "PDLIM6|KIAA0613|ZASP" "cypher|oracle|Z-band alternatively spliced PDZ motif protein" CMD1C cardiomyopathy, dilated 1C (autosomal dominant) "LIM domain containing|PDZ domain containing" "1218|1220" 2001-12-04 2016-10-12 11155 ENSG00000122367 OTTHUMG00000018655 uc001kdv.4 AB014513 XM_011539184 "CCDS7377|CCDS41544|CCDS41545|CCDS53549|CCDS53550|CCDS44450" O75112 "10427098|23271734|23996002|14662268" MGI:1344412 RGD:1564875 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=LDB3|LRG_385|http://www.lrg-sequence.org/LRG/LRG_385" LDB3 605906 123010 +HGNC:6535 LDHA lactate dehydrogenase A protein-coding gene gene with protein product Approved 11p15.1 11p15.1 2001-06-22 2014-11-18 3939 ENSG00000134333 OTTHUMG00000167721 uc001mok.4 X02152 NM_005566 "CCDS7839|CCDS44549|CCDS53609|CCDS53610|CCDS53611" P00338 3000353 MGI:96759 RGD:2996 LDHA 150000 123015 1.1.1.27 +HGNC:28335 LDHAL6A lactate dehydrogenase A like 6A protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "MGC23940|LDH6A" 2004-07-27 2016-04-28 2016-04-28 160287 ENSG00000166800 OTTHUMG00000167724 uc001moq.3 AK131523 NM_144972 CCDS7841 Q6ZMR3 18351441 LDHAL6A +HGNC:21481 LDHAL6B lactate dehydrogenase A like 6B protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "LDHL|LDH6B" LDHAL6 lactate dehydrogenase A-like 6 2004-06-23 2004-07-28 2016-04-28 2016-10-05 92483 ENSG00000171989 OTTHUMG00000132714 uc002agb.5 AY009108 NM_033195 CCDS10171 Q9BYZ2 15870898 MGI:2146830 RGD:727955 LDHAL6B +HGNC:39423 LDHAL6CP lactate dehydrogenase A like 6C, pseudogene pseudogene pseudogene Approved 12q14.2 12q14.2 LDH6C 2012-07-24 2016-04-28 2016-04-28 121498 ENSG00000250517 OTTHUMG00000160114 NG_021722 19679512 PGOHUM00000239825 +HGNC:44239 LDHAL6DP lactate dehydrogenase A like 6D, pseudogene pseudogene pseudogene Approved 11q14.1 11q14.1 2012-07-24 2016-04-28 2016-04-28 100420508 ENSG00000250257 OTTHUMG00000160113 NG_024390 PGOHUM00000242388 +HGNC:44241 LDHAL6EP lactate dehydrogenase A like 6E, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 2012-07-24 2016-04-28 2016-04-28 100420462 ENSG00000270098 OTTHUMG00000160110 NG_025129 PGOHUM00000245586 +HGNC:44240 LDHAL6FP lactate dehydrogenase A like 6F, pseudogene pseudogene pseudogene Approved 6q25.3 06q25.3 2012-07-24 2016-04-28 2016-04-28 100420477 ENSG00000217783 OTTHUMG00000015891 NG_025884 PGOHUM00000243426 +HGNC:6536 LDHAP1 lactate dehydrogenase A pseudogene 1 pseudogene pseudogene Approved 4p16.2 04p16.2 LDHAL1 lactate dehydrogenase A-like 1 2001-06-22 2010-10-19 2010-10-19 2012-10-02 3940 ENSG00000251587 OTTHUMG00000159967 NG_003016 3793094 +HGNC:6537 LDHAP2 lactate dehydrogenase A pseudogene 2 pseudogene pseudogene Approved 1q42.3 01q42.3 LDHAL2 lactate dehydrogenase A-like 2 2001-06-22 2010-10-19 2010-10-19 2014-11-19 100190799 ENSG00000235674 OTTHUMG00000040747 NG_008633 3793094 PGOHUM00000245261 +HGNC:6538 LDHAP3 lactate dehydrogenase A pseudogene 3 pseudogene pseudogene Approved 2p21 02p21 LDHAL3 lactate dehydrogenase A-like 3 1989-05-10 2010-10-19 2010-10-19 2014-11-19 442013 ENSG00000236090 OTTHUMG00000152304 NG_009318 3180843 PGOHUM00000259778 +HGNC:6539 LDHAP4 lactate dehydrogenase A pseudogene 4 pseudogene pseudogene Approved 9p22.3 09p22.3 LDHAL4 lactate dehydrogenase A-like 4 1989-05-10 2010-10-19 2010-10-19 2014-11-18 158222 ENSG00000214110 OTTHUMG00000019577 NG_001313 3180843 PGOHUM00000260451 +HGNC:6540 LDHAP5 lactate dehydrogenase A pseudogene 5 pseudogene pseudogene Approved 10q26.11 10q26.11 LDHAL5 lactate dehydrogenase A-like 5 1989-05-10 2010-10-19 2010-10-19 2014-11-19 729666 ENSG00000213574 OTTHUMG00000019139 NG_008632 3180843 PGOHUM00000238635 +HGNC:23144 LDHAP7 lactate dehydrogenase A pseudogene 7 pseudogene pseudogene Approved 2p11.2 02p11.2 LDHAL7 lactate dehydrogenase A-like 7 2003-09-18 2010-10-20 2010-10-20 2014-11-18 100190800 ENSG00000235847 OTTHUMG00000152923 NG_008634 PGOHUM00000259738 +HGNC:6541 LDHB lactate dehydrogenase B protein-coding gene gene with protein product Approved 12p12.1 12p12.1 2001-06-22 2016-10-05 3945 ENSG00000111716 OTTHUMG00000133760 uc001rfe.4 NM_002300 CCDS8691 P07195 MGI:96763 RGD:2997 LDHB 150100 123017 1.1.1.27 +HGNC:6542 LDHBP1 lactate dehydrogenase B pseudogene 1 pseudogene pseudogene Approved 13q34 13q34 LDHBL1 lactate dehydrogenase B-like 1 1989-05-10 2010-10-20 2010-10-20 2010-10-20 100289475 ENSG00000232662 OTTHUMG00000017383 NG_021974 PGOHUM00000248687 +HGNC:6543 LDHBP2 lactate dehydrogenase B pseudogene 2 pseudogene pseudogene Approved Xq13.3 Xq13.3 "LDHBP|LDHBL2" "lactate dehydrogenase B pseudogene|lactate dehydrogenase B-like 2" 1989-05-10 2010-10-20 2010-10-20 2011-01-12 3947 ENSG00000213684 OTTHUMG00000021877 M60601 NG_001155 2393406 PGOHUM00000241405 +HGNC:39136 LDHBP3 lactate dehydrogenase B pseudogene 3 pseudogene pseudogene Approved 5q14.3 05q14.3 2010-10-20 2010-10-20 100129283 ENSG00000248950 OTTHUMG00000160111 NG_016809 PGOHUM00000235310 +HGNC:6544 LDHC lactate dehydrogenase C protein-coding gene gene with protein product Approved 11p15.1 11p15.1 CT32 cancer/testis antigen 32 2001-06-22 2014-11-18 3948 ENSG00000166796 OTTHUMG00000167722 uc001mon.5 AY286300 NM_017448 CCDS7840 P07864 MGI:96764 RGD:69366 LDHC 150150 1.1.1.27 +HGNC:19708 LDHD lactate dehydrogenase D protein-coding gene gene with protein product Approved 16q23.1 16q23.1 2002-11-13 2016-10-05 197257 ENSG00000166816 OTTHUMG00000137605 uc002fdm.4 AY092767 NM_153486 "CCDS10913|CCDS45529" Q86WU2 12127981 MGI:106428 RGD:1308107 LDHD 607490 +HGNC:6547 LDLR low density lipoprotein receptor protein-coding gene gene with protein product Approved 19p13.2 19p13.2 LDLCQ2 familial hypercholesterolemia Low density lipoprotein receptors 634 1986-01-01 2008-08-01 2016-10-12 3949 ENSG00000130164 OTTHUMG00000171935 uc002mqk.5 AY114155 XR_001753685 "CCDS12254|CCDS56083|CCDS56084|CCDS56085|CCDS58651" P01130 MGI:96765 RGD:2998 "Hypercholesterolemia, Familial|http://www.ucl.ac.uk/fh/|UMD Locus Specific Databases|http://www.umd.be/|British Heart Foundation|http://www.ucl.ac.uk/ldlr/Current/home.php?select_db=LDLR|LRG_274|http://www.lrg-sequence.org/LRG/LRG_274" LDLR 606945 123021 +HGNC:32069 LDLRAD1 low density lipoprotein receptor class A domain containing 1 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 low density lipoprotein receptor A domain containing 1 2005-07-14 2005-10-07 2015-09-03 388633 ENSG00000203985 OTTHUMG00000008433 uc001cwm.3 NM_001010978 "CCDS30725|CCDS60145|CCDS60146|CCDS60147" Q5T700 MGI:3652166 RGD:1597398 LDLRAD1 +HGNC:32071 LDLRAD2 low density lipoprotein receptor class A domain containing 2 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 low density lipoprotein receptor A domain containing 2 2005-07-14 2005-10-07 2015-09-03 401944 ENSG00000187942 OTTHUMG00000002675 uc001bfg.1 AL590103 NM_001013693 CCDS30624 Q5SZI1 MGI:3588210 RGD:1564888 LDLRAD2 +HGNC:27046 LDLRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding gene gene with protein product Approved 11p13 11p13 LRAD3 2005-10-07 2014-11-18 143458 ENSG00000179241 OTTHUMG00000166313 uc001mwk.2 AK075546 NM_174902 "CCDS31462|CCDS76394" Q86YD5 21795536 MGI:2138856 RGD:1307846 LDLRAD3 +HGNC:1224 LDLRAD4 low density lipoprotein receptor class A domain containing 4 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 clone 22 C18orf1 chromosome 18 open reading frame 1 1998-08-06 2012-10-24 2012-10-24 2014-11-19 753 ENSG00000168675 OTTHUMG00000181925 uc031rhm.2 "AF009424|AF009428" NM_181481 "CCDS32793|CCDS32794|CCDS32795|CCDS42415|CCDS62392|CCDS62393" O15165 "9479497|9129712|24627487" MGI:1277150 RGD:1587105 606571 +HGNC:48592 LDLRAD4-AS1 LDLRAD4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18p11.21 18p11.21 2013-05-21 2013-05-21 100288122 ENSG00000267690 OTTHUMG00000181929 BC042085 NR_040031 +HGNC:18640 LDLRAP1 low density lipoprotein receptor adaptor protein 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "ARH|ARH2|FHCB1|FHCB2|MGC34705|DKFZp586D0624" 2005-02-24 2016-10-12 26119 ENSG00000157978 OTTHUMG00000007386 uc001bkl.5 BC029770 NM_015627 CCDS30639 Q5SW96 MGI:2140175 RGD:1563417 LRG_276|http://www.lrg-sequence.org/LRG/LRG_276 LDLRAP1 605747 123023 +HGNC:6548 LDOC1 leucine zipper down-regulated in cancer 1 protein-coding gene gene with protein product Approved Xq27.1 Xq27.1 "Mar7|Mart7" BCUR1 2000-05-19 2016-07-04 2016-10-05 23641 ENSG00000182195 OTTHUMG00000022558 uc004fbj.5 AB019527 NM_012317 CCDS14672 O95751 "10403563|15716091|16093683" MGI:2685212 RGD:1565644 LDOC1 300402 +HGNC:13343 LDOC1L leucine zipper down-regulated in cancer 1 like protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "dJ1033E15.2|DKFZp761O17121|Mart6|Mar6" 2004-06-07 2016-07-04 2016-10-05 84247 ENSG00000188636 OTTHUMG00000150465 uc003beu.2 CR456439 NM_032287 CCDS33662 Q6ICC9 "15716091|16093683" MGI:2675858 RGD:1306472 LDOC1L +HGNC:29571 LEAP2 liver enriched antimicrobial peptide 2 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 LEAP-2 liver expressed antimicrobial peptide 2 2006-08-22 2016-07-11 2016-07-11 116842 ENSG00000164406 OTTHUMG00000059837 uc003kyc.4 "AJ409065|BX443829" NM_052971 CCDS4163 Q969E1 12493837 MGI:2672795 LEAP2 611373 +HGNC:17005 LECT1 leukocyte cell derived chemotaxin 1 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "CHM-I|CHM1|chondromodulin|BRICD3" BRICHOS domain containing 3 MYETS1 multiple myeloma tumor suppressor 1 BRICHOS domain containing 457 2003-02-18 2015-08-25 11061 ENSG00000136110 OTTHUMG00000016980 uc001vhf.4 AB006000 XM_011534897 "CCDS9437|CCDS45051" O75829 "9731231|10103018" MGI:1341171 RGD:620176 LECT1 605147 +HGNC:6550 LECT2 leukocyte cell derived chemotaxin 2 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "chm-II|chm2" leukocyte cell-derived chemotaxin 2 1997-12-19 2016-01-22 2016-01-22 3950 ENSG00000145826 OTTHUMG00000129146 uc003lbe.1 AB007546 NM_002302 CCDS4190 O14960 9545637 MGI:1278342 RGD:1305404 LECT2 602882 +HGNC:6551 LEF1 lymphoid enhancer binding factor 1 protein-coding gene gene with protein product Approved 4q25 04q25 "TCF1ALPHA|TCF10|TCF7L3" lymphoid enhancer-binding factor 1 1991-06-05 2016-01-13 2016-01-13 51176 ENSG00000138795 OTTHUMG00000131809 uc003hyt.3 XM_005263046 "CCDS3679|CCDS47122|CCDS47123|CCDS54791" Q9UJU2 1783375 MGI:96770 RGD:620241 LEF1 153245 +HGNC:40339 LEF1-AS1 LEF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q25 04q25 LEF1 antisense RNA 1 (non-protein coding) 2012-05-28 2012-08-15 2014-11-19 641518 ENSG00000232021 OTTHUMG00000161028 uc062yxd.1 NR_029373 +HGNC:6552 LEFTY1 left-right determination factor 1 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 LEFTYB LEFTB left-right determination, factor B 1999-07-09 2004-11-17 2004-11-17 2016-10-05 10637 ENSG00000243709 OTTHUMG00000037443 uc001hpo.3 AF081507 NM_020997 CCDS1548 O75610 "10053005|10886363" MGI:107405 RGD:1561867 LEFTY1 603037 +HGNC:3122 LEFTY2 left-right determination factor 2 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 "LEFTA|LEFTYA" transforming growth factor, beta-4 (endometrial bleeding-associated factor; LEFTY A) "TGFB4|EBAF" endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily) 1998-01-20 2004-11-17 2004-11-17 2016-10-05 7044 ENSG00000143768 OTTHUMG00000037441 uc001hpt.3 U81523 NM_003240 "CCDS1549|CCDS53479" O00292 9153275 MGI:2443573 LEFTY2 601877 168165 +HGNC:33765 LEKR1 leucine, glutamate and lysine rich 1 protein-coding gene gene with protein product Approved 3q25.31 03q25.31 FLJ16641 2008-02-21 2008-02-21 2015-08-25 389170 ENSG00000197980 OTTHUMG00000160130 uc021xgh.1 AK131473 NM_001004316 CCDS54660 Q6ZMV7 MGI:3645902 RGD:1565425 LEKR1 613536 +HGNC:32046 LELP1 late cornified envelope like proline rich 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 2005-11-03 2016-04-06 2016-04-06 149018 ENSG00000203784 OTTHUMG00000013935 uc001fbl.5 NM_001010857 CCDS30869 Q5T871 MGI:1916582 RGD:7528988 LELP1 611042 +HGNC:18725 LEMD1 LEM domain containing 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "LEMP-1|CT50" cancer/testis antigen 50 LEM domain containing 1087 2002-06-06 2014-11-19 93273 ENSG00000186007 OTTHUMG00000037201 uc001hcj.4 NM_001001552 "CCDS30986|CCDS55677|CCDS55678|CCDS55679" Q68G75 15254688 MGI:1922403 LEMD1 610480 +HGNC:44132 LEMD1-AS1 LEMD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 LEMD1 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 284576 ENSG00000226235 OTTHUMG00000037200 uc001hch.1 AK090497 NR_038425 +HGNC:21244 LEMD2 LEM domain containing 2 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "dJ482C21.1|NET25" LEM domain containing 1087 2003-05-29 2014-11-19 221496 ENSG00000161904 OTTHUMG00000014535 uc011drm.3 XM_166338 "CCDS4785|CCDS47411" Q8NC56 12477932 MGI:2385045 RGD:1305341 LEMD2 616312 464297 +HGNC:28887 LEMD3 LEM domain containing 3 protein-coding gene gene with protein product Approved 12q14.3 12q14.3 MAN1 LEM domain containing 1087 2004-11-01 2016-10-05 23592 ENSG00000174106 OTTHUMG00000168840 uc001ssl.3 AF263918 NM_014319 CCDS8972 Q9Y2U8 "10671519|15489854" MGI:3580376 RGD:1596822 LEMD3 607844 123031 +HGNC:14429 LENEP lens epithelial protein protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LEP503 2001-02-20 2016-10-05 55891 ENSG00000163352 OTTHUMG00000037417 uc057lke.1 AF268478 NM_018655 CCDS1080 Q9Y5L5 "10655141|11376938" MGI:1930020 RGD:69433 LENEP 607377 +HGNC:15502 LENG1 leukocyte receptor cluster member 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 leukocyte receptor cluster (LRC) member 1 2004-01-28 2016-06-01 2016-10-05 79165 ENSG00000105617 OTTHUMG00000066486 uc002qdm.4 AF211966 NM_024316 CCDS12881 Q96BZ8 10941842 MGI:1917007 RGD:1307933 LENG1 +HGNC:15499 LENG6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-07-31 +HGNC:15500 LENG8 leukocyte receptor cluster member 8 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "KIAA1932|MGC40108|pp13842" leukocyte receptor cluster (LRC) member 8 2004-01-28 2016-06-01 2016-10-05 114823 ENSG00000167615 OTTHUMG00000065548 uc032iea.2 AF211975 NM_052925 CCDS12894 Q96PV6 10941842 MGI:2142195 RGD:1306180 LENG8 616575 +HGNC:40705 LENG8-AS1 LENG8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.42 19q13.42 LENG8 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 104355426 ENSG00000226696 OTTHUMG00000133686 uc061cqw.1 NR_126418 +HGNC:16306 LENG9 leukocyte receptor cluster member 9 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 leukocyte receptor cluster (LRC) member 9 2004-01-28 2016-06-01 2016-06-01 94059 ENSG00000275183 OTTHUMG00000188273 uc032mqr.2 AF211976 NM_198988 CCDS77358 Q96B70 10941842 MGI:2444509 RGD:6488215 LENG9 +HGNC:16308 LENG10 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-07-31 +HGNC:16307 LENG11 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-07-31 +HGNC:30401 LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component protein-coding gene gene with protein product Approved 15q21.2 15q21.2 Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) Paf1/RNA polymerase II complex 1029 2005-07-20 2015-07-02 2015-07-02 123169 ENSG00000166477 OTTHUMG00000131843 uc002abo.5 AY302186 NM_138792 "CCDS10146|CCDS66767" Q8WVC0 "15632063|24038468" MGI:2685031 RGD:1549772 LEO1 610507 +HGNC:6553 LEP leptin protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "OBS|OB" "leptin (murine obesity homolog)|leptin (obesity homolog, mouse)" 1993-01-26 2008-03-06 2016-10-05 3952 ENSG00000174697 OTTHUMG00000157564 uc003vml.3 XM_005250340 CCDS5800 P41159 "1686014|16932309" MGI:104663 RGD:3000 LEP 164160 123034 +HGNC:6554 LEPR leptin receptor protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "OBR|CD295" "CD molecules|Immunoglobulin like domain containing" "471|594" 1996-05-09 2016-10-12 3953 ENSG00000116678 OTTHUMG00000009115 uc001dci.4 U43168 NM_002303 "CCDS631|CCDS30740|CCDS30741|CCDS55604" P48357 "8548812|8812446" MGI:104993 RGD:3001 LRG_283|http://www.lrg-sequence.org/LRG/LRG_283 LEPR 601007 123038 objectId:1712 CD295 +HGNC:29477 LEPROT leptin receptor overlapping transcript protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "OBRGRP|OB-RGRP|VPS55|FLJ90360" leptin receptor gene related protein 2004-11-16 2016-10-05 54741 ENSG00000213625 OTTHUMG00000009065 uc001dcf.4 Y12670 NM_017526 "CCDS630|CCDS72801" O15243 9207021 MGI:2687005 RGD:621034 LEPROT 613461 +HGNC:6555 LEPROTL1 leptin receptor overlapping transcript-like 1 protein-coding gene gene with protein product Approved 8p12 08p12 "my047|Vps55" 2000-06-15 2015-08-25 23484 ENSG00000104660 OTTHUMG00000163820 uc003xhw.5 AF063605 NM_015344 "CCDS6075|CCDS47834" O95214 11342119 MGI:1915442 RGD:1307168 LEPROTL1 607338 +HGNC:6556 LETM1 leucine zipper and EF-hand containing transmembrane protein 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 Mdm38 homolog (yeast) leucine zipper-EF-hand containing transmembrane protein 1 EF-hand domain containing 863 1998-05-13 2016-02-29 2016-02-29 3954 ENSG00000168924 OTTHUMG00000121149 uc003gdv.3 AF061025 XM_017008187 CCDS3355 O95202 10486213 MGI:1932557 RGD:1359678 LETM1 604407 293326 +HGNC:14649 LETM1P1 leucine zipper and EF-hand containing transmembrane protein 1 pseudogene 1 pseudogene pseudogene Approved 15q22.31 15q22.31 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 1 2008-02-01 2016-02-29 2016-02-29 390597 NG_007651 11549311 +HGNC:33985 LETM1P2 leucine zipper and EF-hand containing transmembrane protein 1 pseudogene 2 pseudogene pseudogene Approved 19q13.43 19q13.43 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 2 2008-02-01 2016-02-29 2016-02-29 100131934 ENSG00000268660 OTTHUMG00000183382 NG_007659 PGOHUM00000234818 +HGNC:33986 LETM1P3 leucine zipper and EF-hand containing transmembrane protein 1 pseudogene 3 pseudogene pseudogene Approved 8q22.2 08q22.2 leucine zipper-EF-hand containing transmembrane protein 1, pseudogene 3 2008-02-01 2016-02-29 2016-02-29 100151646 NG_007658 +HGNC:14648 LETM2 leucine zipper and EF-hand containing transmembrane protein 2 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 FLJ25409 leucine zipper-EF-hand containing transmembrane protein 2 EF-hand domain containing 863 2004-07-09 2016-02-29 2016-02-29 137994 ENSG00000165046 OTTHUMG00000165059 uc003xlm.4 AK058138 NM_144652 "CCDS6106|CCDS56534|CCDS69466|CCDS75731|CCDS83282" Q2VYF4 11549311 MGI:2444979 RGD:1311220 LETM2 +HGNC:24241 LETMD1 LETM1 domain containing 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HCCR1|HCCR|HCCR-2|HCCR-1|HCCR2" cervical cancer 1 protooncogene 2004-08-27 2016-07-15 25875 ENSG00000050426 OTTHUMG00000169538 uc001rxm.4 AF195651 NM_015416 "CCDS8806|CCDS58231|CCDS73469" Q6P1Q0 "12879013|12061725" MGI:1915864 RGD:1596738 LETMD1 +HGNC:31953 LEUTX leucine twenty homeobox protein-coding gene gene with protein product Approved 19q13.2 19q13.2 PRD class homeoboxes and pseudogenes 521 2008-02-02 2014-11-19 342900 ENSG00000213921 OTTHUMG00000170877 uc010xvg.3 XM_001129035 A8MZ59 LEUTX 8635 +HGNC:26854 LEXM lymphocyte expansion molecule protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "FLJ40201|LEM" C1orf177 chromosome 1 open reading frame 177 2005-07-25 2015-09-02 2015-09-02 2015-09-02 163747 ENSG00000162398 OTTHUMG00000009986 AK097520 NM_152607 "CCDS599|CCDS44153" Q3ZCV2 25883318 MGI:2681853 RGD:1559493 616446 +HGNC:6560 LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding gene gene with protein product Approved 7p22.3 07p22.3 SCDO3 "lunatic fringe (Drosophila) homolog|lunatic fringe homolog (Drosophila)" Beta 3-glycosyltransferases 426 1997-11-07 2006-11-13 2014-11-19 3955 ENSG00000106003 OTTHUMG00000152043 uc003smf.4 BC014851 NM_002304 "CCDS34586|CCDS34587|CCDS55081|CCDS55082" Q8NES3 "9878264|9187150" MGI:1095413 RGD:620587 LFNG 602576 159744 2.4.1.222 +HGNC:6561 LGALS1 galectin 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 GBP lectin, galactoside-binding, soluble, 1 "Endogenous ligands|Galectins" "542|629" 1991-09-13 2016-05-13 2016-05-13 3956 ENSG00000100097 OTTHUMG00000150661 uc003atn.4 NM_002305 CCDS13954 P09382 "1988031|12271131" MGI:96777 RGD:69355 LGALS1 150570 +HGNC:6562 LGALS2 galectin 2 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 HL14 lectin, galactoside-binding, soluble, 2 Galectins 629 1992-07-20 2016-05-13 2016-05-13 3957 ENSG00000100079 OTTHUMG00000150590 uc003ata.4 NM_006498 CCDS13950 P05162 "1988031|15356130" MGI:895068 RGD:621269 LGALS2 150571 +HGNC:6563 LGALS3 galectin 3 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 "MAC-2|GALIG" advanced glycation end-product receptor 3 LGALS2 lectin, galactoside-binding, soluble, 3 "Endogenous ligands|Galectins" "542|629" 1991-09-13 2016-05-13 2016-05-13 3958 ENSG00000131981 OTTHUMG00000171030 uc001xbr.4 M64303 NM_002306 CCDS41956 P17931 "2009535|8063692" MGI:96778 RGD:69356 LGALS3 153619 +HGNC:6564 LGALS3BP galectin 3 binding protein protein-coding gene gene with protein product Approved 17q25 17q25 "MAC-2-BP|90K|BTBD17B|TANGO10B|M2BP|gp90|CyCAP" "L3 antigen|Mac-2-binding protein|serum protein 90K|transport and golgi organization 10 homolog B (Drosophila)" lectin, galactoside-binding, soluble, 3 binding protein "Endogenous ligands|BTB domain containing" "542|861" 1994-09-30 2016-05-13 2016-05-13 3959 ENSG00000108679 OTTHUMG00000177572 uc002jwh.4 L13210 NM_005567 CCDS11759 Q08380 "7698018|8034587|8390986" MGI:99554 RGD:620837 LGALS3BP 600626 +HGNC:6565 LGALS4 galectin 4 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 GAL4 lectin, galactoside-binding, soluble, 4 Galectins 629 1993-08-24 2016-05-13 2016-05-13 3960 ENSG00000171747 OTTHUMG00000182608 uc002ojg.4 NM_006149 CCDS12521 P56470 8063692 MGI:107536 RGD:3003 LGALS4 602518 +HGNC:6568 LGALS7 galectin 7 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "GAL7|PIG1|TP53I1|LGALS7A" lectin, galactoside-binding, soluble, 7 Galectins 629 1995-05-25 2016-05-13 2016-05-13 3963 ENSG00000205076 OTTHUMG00000182606 uc002oje.4 L07769 NM_002307 CCDS33012 P47929 "7534301|7729568" MGI:1316742 RGD:61951 LGALS7 600615 +HGNC:34447 LGALS7B galectin 7B protein-coding gene gene with protein product Approved 19q13.2 19q13.2 GAL7 lectin, galactoside-binding, soluble, 7B Galectins 629 2008-07-25 2016-05-13 2016-05-13 653499 ENSG00000178934 OTTHUMG00000182607 uc002ojf.5 NM_001042507 CCDS42565 P47929 MGI:1316742 617139 +HGNC:6569 LGALS8 galectin 8 protein-coding gene gene with protein product Approved 1q43 01q43 PCTA-1 lectin, galactoside-binding, soluble, 8 Galectins 629 1995-05-25 2016-05-13 2016-05-13 3964 ENSG00000116977 OTTHUMG00000039953 uc001hxy.3 X91790 NM_006499 "CCDS1611|CCDS1612" O00214 "7852431|8692978" MGI:1928481 RGD:621272 LGALS8 606099 +HGNC:40340 LGALS8-AS1 LGALS8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q43 01q43 LGALS8 antisense RNA 1 (non-protein coding) 2011-08-04 2012-08-15 2014-11-19 100287902 ENSG00000223776 OTTHUMG00000039952 uc001hxx.4 NR_034040 +HGNC:6570 LGALS9 galectin 9 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 LGALS9A lectin, galactoside-binding, soluble, 9 Galectins 629 1997-06-25 2016-05-13 2016-05-13 3965 ENSG00000168961 OTTHUMG00000179831 uc002gzp.4 AB006782 NM_009587 "CCDS11222|CCDS32592|CCDS82093" O00182 9045665 MGI:109496 RGD:3005 LGALS9 601879 +HGNC:24842 LGALS9B galectin 9B protein-coding gene gene with protein product Approved 17p11.2 17p11.2 lectin, galactoside-binding, soluble, 9B Galectins 629 2008-07-25 2016-05-13 2016-05-13 284194 ENSG00000170298 OTTHUMG00000130730 uc002gwz.1 NM_001042685 CCDS42283 Q3B8N2 11997339 MGI:109496 LGALS9B +HGNC:33874 LGALS9C galectin 9C protein-coding gene gene with protein product Approved 17p11.2 17p11.2 lectin, galactoside-binding, soluble, 9C Galectins 629 2008-07-25 2016-05-13 2016-05-13 654346 ENSG00000171916 OTTHUMG00000059251 uc002gtw.4 NM_001040078 CCDS32587 Q6DKI2 LGALS9C +HGNC:49896 LGALS9DP galectin 9D, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 lectin, galactoside-binding, soluble, 9D, pseudogene 2014-03-19 2016-05-13 2016-05-13 645754 ENSG00000266786 OTTHUMG00000179205 NG_005629 PGOHUM00000237334 +HGNC:15788 LGALS12 galectin 12 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 GRIP1 lectin, galactoside-binding, soluble, 12 Galectins 629 2001-11-14 2016-05-13 2016-10-05 85329 ENSG00000133317 OTTHUMG00000167807 uc001nxa.3 AF222695 NM_033101 "CCDS8045|CCDS44633|CCDS44634|CCDS44635|CCDS53648" Q96DT0 "11283015|11435439" MGI:1929094 RGD:1306914 LGALS12 606096 +HGNC:15449 LGALS13 galectin 13 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "PP13|PLAC8" lectin, galactoside-binding, soluble, 13 Galectins 629 2004-03-11 2016-05-13 2016-05-13 29124 ENSG00000105198 OTTHUMG00000183073 uc002omb.4 AF117383 NM_013268 CCDS33024 Q9UHV8 "6856484|10527825" LGALS13 608717 +HGNC:30054 LGALS14 galectin 14 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "PPL13|CLC2" lectin, galactoside-binding, soluble, 14 Galectins 629 2004-05-17 2016-05-13 2016-05-13 56891 ENSG00000006659 OTTHUMG00000183143 uc002omf.4 AF267852 NM_020129 "CCDS12542|CCDS46073" Q8TCE9 11997112 LGALS14 607260 +HGNC:40039 LGALS16 galectin 16 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 lectin, galactoside-binding, soluble, 16 Galectins 629 2011-08-04 2016-05-13 2016-05-13 148003 ENSG00000249861 OTTHUMG00000183083 uc021uun.2 NM_001190441 CCDS54267 A8MUM7 19497882 LGALS16 +HGNC:25012 LGALSL galectin like protein-coding gene gene with protein product Approved 2p14 02p14 "HSPC159|GRP" galectin-related protein lectin, galactoside-binding-like 2011-08-15 2016-05-13 2016-05-13 29094 ENSG00000119862 OTTHUMG00000129541 uc002scy.5 AF161508 NM_014181 CCDS1877 Q3ZCW2 "11042152|16682780" MGI:1916114 RGD:1307414 +HGNC:6572 LGI1 leucine rich glioma inactivated 1 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "IB1099|ETL1|EPITEMPIN" EPT epilepsy, partial 1998-09-25 2016-06-06 2016-10-05 9211 ENSG00000108231 OTTHUMG00000018777 uc001kjc.5 AF055636 NM_005097 "CCDS7431|CCDS76325|CCDS81490" O95970 "9879993|11978770|15079011" MGI:1861691 RGD:628742 LGI1 604619 123042 +HGNC:18710 LGI2 leucine rich repeat LGI family member 2 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "KIAA1916|FLJ10675" leucine-rich repeat LGI family, member 2 2002-05-30 2016-06-06 2016-10-05 55203 ENSG00000153012 OTTHUMG00000097749 uc003grf.3 AJ487516 XM_011513850 CCDS3431 Q8N0V4 "12023020|16014869" MGI:2180196 RGD:1310391 LGI2 608301 +HGNC:18711 LGI3 leucine rich repeat LGI family member 3 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 leucine-rich repeat LGI family, member 3 2002-05-30 2016-06-06 2016-10-05 203190 ENSG00000168481 OTTHUMG00000131599 uc003xav.4 AJ487518 NM_139278 CCDS6025 Q8N145 "12023020|18628660" MGI:2182619 RGD:1311079 LGI3 608302 +HGNC:18712 LGI4 leucine rich repeat LGI family member 4 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 leucine-rich repeat LGI family, member 4 2002-05-30 2016-06-06 2016-10-05 163175 ENSG00000153902 OTTHUMG00000044558 uc002nxx.3 AJ487519 XM_017026428 CCDS12444 Q8N135 12023020 MGI:2180197 RGD:735035 LGI4 608303 +HGNC:32230 LGMD1G limb girdle muscular dystrophy 1G (autosomal dominant) phenotype phenotype only Approved 4q21.21 04q21.21 2006-11-10 2006-11-10 553991 15367920 +HGNC:38505 LGMD1H limb girdle muscular dystrophy 1H (autosomal dominant) phenotype phenotype only Approved 3p25-p23 03p25-p23 2010-05-25 2011-02-10 100529230 20068593 613530 +HGNC:9472 LGMN legumain protein-coding gene gene with protein product Approved 14q32.12 14q32.12 LGMN1 PRSC1 protease, cysteine, 1 (legumain) 1995-12-18 2002-01-18 2014-11-19 5641 ENSG00000100600 OTTHUMG00000171199 uc001yaw.4 D55696 NM_005606 CCDS9904 Q99538 "8893817|9065484" MGI:1330838 RGD:619832 LGMN 602620 C13.004 objectId:2380 +HGNC:23079 LGMNP1 legumain pseudogene 1 pseudogene pseudogene Approved 13q21.31 13q21.31 LGMN2P legumain 2 pseudogene 2003-09-03 2011-04-08 2011-04-08 2016-10-05 122199 ENSG00000214269 OTTHUMG00000017029 NG_001534 PGOHUM00000248419 C13.P01 +HGNC:13299 LGR4 leucine rich repeat containing G protein-coupled receptor 4 protein-coding gene gene with protein product Approved 11p14.1 11p14.1 GPR48 G protein-coupled receptor 48 G protein-coupled receptors, Class A orphans 262 2000-09-19 2004-11-12 2016-06-06 2016-10-05 55366 ENSG00000205213 OTTHUMG00000133508 uc001mrj.5 AF257182 NM_018490 CCDS31449 Q9BXB1 10894923 MGI:1891468 RGD:628615 LGR4 606666 objectId:147 +HGNC:4504 LGR5 leucine rich repeat containing G protein-coupled receptor 5 protein-coding gene gene with protein product Approved 12q21.1 12q21.1 "HG38|FEX" "GPR67|GPR49" G protein-coupled receptor 49 G protein-coupled receptors, Class A orphans 262 1999-10-22 2004-11-12 2016-06-06 2016-06-06 8549 ENSG00000139292 OTTHUMG00000169543 uc001swl.5 AF062006 NM_003667 "CCDS9000|CCDS61194|CCDS61195" O75473 9642114 MGI:1341817 RGD:1307733 LGR5 606667 objectId:148 +HGNC:19719 LGR6 leucine rich repeat containing G protein-coupled receptor 6 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 FLJ14471 G protein-coupled receptors, Class A orphans 262 2003-12-04 2016-06-06 2016-06-06 59352 ENSG00000133067 OTTHUMG00000041383 uc001gxu.4 AF190501 NM_021636 "CCDS1424|CCDS30971|CCDS30972" Q9HBX8 10935549 MGI:2441805 RGD:1560339 LGR6 606653 objectId:149 +HGNC:21016 LGSN lengsin, lens protein with glutamine synthetase domain protein-coding gene gene with protein product Approved 6q12 06q12 LGS GLULD1 glutamate-ammonia ligase (glutamine synthetase) domain containing 1 2003-05-02 2008-09-19 2008-09-19 2014-11-19 51557 ENSG00000146166 OTTHUMG00000014946 uc003peh.4 AF242388 NM_016571 "CCDS4964|CCDS55027" Q5TDP6 12107412 MGI:2672844 RGD:727925 LGSN 611470 +HGNC:39494 LGTN ligatin other unknown Approved reserved reserved 2011-01-19 2013-03-26 100529141 3805022 151625 +HGNC:6584 LHB luteinizing hormone beta polypeptide protein-coding gene gene with protein product Approved 19q13.3 19q13.3 "LSH-B|CGB4|hLHB" "lutropin, beta chain|interstitial cell stimulating hormone, beta chain|luteinizing hormone beta subunit" Endogenous ligands 542 1986-01-01 2014-11-19 3972 ENSG00000104826 OTTHUMG00000183334 uc002plt.4 NM_000894 CCDS12748 P01229 1191677 MGI:96782 RGD:3006 LHB 152780 123046 +HGNC:6585 LHCGR luteinizing hormone/choriogonadotropin receptor protein-coding gene gene with protein product Approved 2p16.3 02p16.3 "LHR|LCGR|LGR2|ULG5" HHG hypergonadotropic hypogonadism Glycoprotein hormone receptors 199 1990-03-05 2016-10-05 3973 ENSG00000138039 OTTHUMG00000129257 uc002rwu.5 NM_000233.3 CCDS1842 P22888 MGI:96783 RGD:3007 LHCGR 152790 123048 objectId:254 +HGNC:6586 LHFP lipoma HMGIC fusion partner protein-coding gene gene with protein product Approved 13q13.3-q14.11 13q13.3-q14.11 MGC22429 1999-06-02 2016-10-11 10186 ENSG00000183722 OTTHUMG00000016767 uc001uxf.4 AF098807 NM_005780 CCDS9369 Q9Y693 10329012 MGI:1920048 RGD:1560177 LHFP 606710 +HGNC:6587 LHFPL1 lipoma HMGIC fusion partner-like 1 protein-coding gene gene with protein product Approved Xq23 Xq23 1999-06-02 2014-11-19 340596 ENSG00000182508 OTTHUMG00000022214 uc004epq.4 AY217350 NM_178175 CCDS14562 Q86WI0 10329012 MGI:1891214 RGD:727927 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=LHFPL1 LHFPL1 300566 +HGNC:6588 LHFPL2 lipoma HMGIC fusion partner-like 2 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 KIAA0206 1999-06-02 2016-10-05 10184 ENSG00000145685 OTTHUMG00000107579 uc003kfo.4 D86961 NM_005779 CCDS4042 Q6ZUX7 10329012 MGI:2145236 RGD:1309869 LHFPL2 609718 +HGNC:6589 LHFPL3 lipoma HMGIC fusion partner-like 3 protein-coding gene gene with protein product Approved 7q22.2-q22.3 07q22.2-q22.3 LHFPL4 lipoma HMGIC fusion partner-like 4 1999-06-02 2016-10-11 375612 ENSG00000187416 OTTHUMG00000157273 uc064gsi.1 AY260763 NM_199000 Q86UP9 10329012 MGI:1925076 RGD:1559727 LHFPL3 609719 +HGNC:40341 LHFPL3-AS1 LHFPL3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q22.2 07q22.2 LHFPL3 antisense RNA 1 (non-protein coding) 2012-06-28 2012-08-15 2014-11-19 645591 ENSG00000226869 OTTHUMG00000157276 uc064gsl.1 BC012751 NR_034142 +HGNC:44106 LHFPL3-AS2 LHFPL3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 7q22.3 07q22.3 LHFPL3 antisense RNA 2 (non-protein coding) 2012-06-22 2012-08-15 2012-10-12 723809 ENSG00000225329 OTTHUMG00000157279 uc003vch.1 BC050337 NR_027374 +HGNC:29568 LHFPL4 lipoma HMGIC fusion partner-like 4 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 2006-06-13 2014-11-19 375323 ENSG00000156959 OTTHUMG00000155066 uc003bry.3 AY278320 NM_198560 CCDS33691 Q7Z7J7 15905332 MGI:3057108 RGD:727967 LHFPL4 610240 +HGNC:21253 LHFPL5 lipoma HMGIC fusion partner-like 5 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "MGC33835|dJ510O8.8|Tmhs" tetraspan membrane protein of hair cell stereocilia DFNB67 deafness, autosomal recessive 67 2003-11-26 2016-07-26 222662 ENSG00000197753 OTTHUMG00000014584 uc003olg.2 BC028630 NM_182548 CCDS4812 Q8TAF8 16459341 MGI:1915382 RGD:1359370 LHFPL5 609427 159414 +HGNC:30042 LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding gene gene with protein product Approved 10q26.13 10q26.13 HDHD2B HAD Asp-based non-protein phosphatases 1045 2009-11-06 2016-10-05 64077 ENSG00000107902 OTTHUMG00000019214 uc001lhs.3 AB049629 NM_022126 "CCDS7640|CCDS53587|CCDS81519" Q9H008 "12801912|16430861" MGI:1923679 RGD:1359187 LHPP 3.6.1.1 +HGNC:6593 LHX1 LIM homeobox 1 protein-coding gene gene with protein product Approved 17q12 17q12 "LIM-1|LIM1" LIM class homeoboxes 522 1996-10-02 2015-09-03 3975 ENSG00000273706 OTTHUMG00000188456 uc032feb.2 U14755 NM_005568 CCDS11316 P48742 9212161 MGI:99783 RGD:71074 LHX1 601999 8453 317394 +HGNC:6594 LHX2 LIM homeobox 2 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "LH-2|hLhx2" LIM class homeoboxes 522 1999-04-15 2014-11-19 9355 ENSG00000106689 OTTHUMG00000020647 uc004boe.2 U11701 NM_004789 CCDS6853 P50458 "8649822|10051612" MGI:96785 RGD:71076 LHX2 603759 8454 +HGNC:6595 LHX3 LIM homeobox 3 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 LIM class homeoboxes 522 2000-03-22 2015-09-03 8022 ENSG00000107187 OTTHUMG00000020924 uc004cgz.3 AF096169 XM_017015168 "CCDS6994|CCDS6995" Q9UBR4 "10598593|10717474" MGI:102673 RGD:71078 LHX3 600577 8455 123053 +HGNC:21734 LHX4 LIM homeobox 4 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 Gsh4 LIM class homeoboxes 522 2003-07-21 2016-10-05 89884 ENSG00000121454 OTTHUMG00000035115 uc001goe.3 AB037683 NM_033343 CCDS1338 Q969G2 "11844481|11567216" MGI:101776 RGD:1308044 LHX4 602146 8456 138383 +HGNC:40982 LHX4-AS1 LHX4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q25.2 01q25.2 2014-05-21 2015-01-29 100527964 OTTHUMG00000035113 NR_037642 +HGNC:14216 LHX5 LIM homeobox 5 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 LIM class homeoboxes 522 2000-12-11 2014-01-15 64211 ENSG00000089116 OTTHUMG00000169552 uc001tvj.2 AF291181 NM_022363 CCDS9171 Q9H2C1 MGI:107792 RGD:71079 LHX5 605992 8457 +HGNC:49570 LHX5-AS1 LHX5 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 12q24.13 12q24.13 locus4010 locus 4010 2014-01-11 2014-01-15 104355219 ENSG00000257935 OTTHUMG00000169553 DB553737 NR_126425 23382218 +HGNC:21735 LHX6 LIM homeobox 6 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 LHX6.1 LIM class homeoboxes 522 2003-07-21 2015-08-25 26468 ENSG00000106852 OTTHUMG00000020601 uc004blx.5 AB031041 NM_014368 "CCDS6837|CCDS6838|CCDS56583|CCDS56584|CCDS59144" Q9UPM6 10393337 MGI:1306803 RGD:1306174 LHX6 608215 8535 +HGNC:28838 LHX8 LIM homeobox 8 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 Lhx7 LIM class homeoboxes 522 2005-06-02 2014-11-19 431707 ENSG00000162624 OTTHUMG00000009692 uc001dgo.3 AB050476 NM_001001933 "CCDS30756|CCDS58008" Q68G74 9598319 MGI:1096343 RGD:1308749 LHX8 604425 8458 +HGNC:14222 LHX9 LIM homeobox 9 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 LIM class homeoboxes 522 2000-12-11 2016-10-05 56956 ENSG00000143355 OTTHUMG00000035656 uc001gui.2 AJ277915 NM_020204 "CCDS1393|CCDS30962" Q9NQ69 MGI:1316721 RGD:727956 LHX9 606066 8459 +HGNC:16429 LIAS lipoic acid synthetase protein-coding gene gene with protein product Approved 4p14 04p14 LAS 2001-11-30 2014-11-19 11019 ENSG00000121897 OTTHUMG00000099369 uc003guf.5 AJ224162 NM_194451 "CCDS3453|CCDS3454|CCDS63950" O43766 11124703 MGI:1934604 RGD:1307270 LIAS 607031 404076 +HGNC:6596 LIF leukemia inhibitory factor protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "CDF|DIA|HILDA" "differentiation inhibitory activity|differentiation-inducing factor|hepatocyte-stimulating factor III|cholinergic differentiation factor|human interleukin in DA cells" "Endogenous ligands|Interleukin 6 cytokine family" "542|1264" 1989-06-11 2012-02-09 2014-11-19 3976 ENSG00000128342 OTTHUMG00000150910 uc003agz.3 NM_002309 "CCDS13872|CCDS58799" P15018 "1714745|8058719" MGI:96787 RGD:620865 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ LIF 159540 +HGNC:6597 LIFR leukemia inhibitory factor receptor alpha protein-coding gene gene with protein product Approved 5p13.1 05p13.1 CD118 leukemia inhibitory factor receptor "CD molecules|Fibronectin type III domain containing" "471|555" 1992-08-24 2006-05-17 2016-10-05 3977 ENSG00000113594 OTTHUMG00000131138 uc003jli.3 X61615 NM_002310 CCDS3927 P42702 1915266 MGI:96788 RGD:621431 LIFR 151443 123055 objectId:1713 CD118 +HGNC:43600 LIFR-AS1 LIFR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p13.1 05p13.1 LIFR antisense RNA 1 (non-protein coding) 2011-11-23 2012-08-15 2012-10-12 100506495 ENSG00000244968 OTTHUMG00000162109 uc003jlj.5 BC038371 NR_103553 +HGNC:6598 LIG1 DNA ligase 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 ligase I, DNA, ATP-dependent "DNA ligases|Nucleotide excision repair" "1247|1269" 1991-05-09 2016-04-27 2016-10-12 3978 ENSG00000105486 OTTHUMG00000183187 uc002pia.2 NM_000234 "CCDS12711|CCDS74409|CCDS74410" P18858 1733856 MGI:101789 RGD:621424 "LIG1base: Mutation registry for DNA ligase I deficiency|http://structure.bmc.lu.se/idbase/LIG1base/|LRG_78|http://www.lrg-sequence.org/LRG/LRG_78" LIG1 126391 6.5.1.1 +HGNC:6600 LIG3 DNA ligase 3 protein-coding gene gene with protein product Approved 17q12 17q12 LIG2 "ligase II, DNA, ATP-dependent|ligase III, DNA, ATP-dependent" "Zinc fingers|Zinc fingers PARP-type|DNA ligases" "26|94|1247" 1991-05-09 2016-04-27 2016-10-05 3980 ENSG00000005156 OTTHUMG00000128519 uc002hik.3 NM_013975 "CCDS11284|CCDS11285" P49916 7760816 MGI:109152 RGD:1309875 LIG3 600940 +HGNC:6601 LIG4 DNA ligase 4 protein-coding gene gene with protein product Approved 13q33.3 13q33.3 "polydeoxyribonucleotide synthase [ATP] 4|polynucleotide ligase|sealase|DNA repair enzyme|DNA joinase" ligase IV, DNA, ATP-dependent DNA ligases 1247 1995-08-10 2016-04-27 2016-10-12 3981 ENSG00000174405 OTTHUMG00000017328 uc001vqp.4 X83441 NM_002312 "CCDS9508|CCDS81779" P49917 7760816 MGI:1335098 RGD:1304639 "LIG4base: Mutation registry for LIG4 syndrome|http://structure.bmc.lu.se/idbase/LIG4base/|LRG_79|http://www.lrg-sequence.org/LRG/LRG_79" LIG4 601837 123058 6.5.1.1 +HGNC:6602 LILRA1 leukocyte immunoglobulin like receptor A1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "LIR-6|CD85i|LIR6" leucocyte Ig-like receptor A1 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 1 "CD molecules|Activating leukocyte immunoglobulin like receptors" "471|1181" 2000-01-11 2016-01-14 2016-10-05 11024 ENSG00000104974 OTTHUMG00000065701 uc002qgh.4 AF025530 NM_006863 "CCDS12901|CCDS62802" O75019 9548455 LILRA1 604810 CD85i +HGNC:6603 LILRA2 leukocyte immunoglobulin like receptor A2 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "LIR-7|ILT1|CD85h|LIR7" leucocyte Ig-like receptor A2 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 2 "CD molecules|Activating leukocyte immunoglobulin like receptors" "471|1181" 2000-01-11 2016-01-14 2016-01-14 11027 ENSG00000239998 OTTHUMG00000065703 uc002qgf.5 U82275 XM_017026224 "CCDS12900|CCDS46179|CCDS74453" Q8N149 "9079806|9548455" LILRA2 604812 I43.951 CD85h +HGNC:6604 LILRA3 leukocyte immunoglobulin like receptor A3 protein-coding gene gene with protein product Approved 19q13.4 alternate reference locus 19q13.4 alternate reference locus "LIR-4|HM43|ILT6|HM31|LIR4|CD85e" leucocyte Ig-like receptor A3 leukocyte immunoglobulin-like receptor, subfamily A (without TM domain), member 3 "CD molecules|Activating leukocyte immunoglobulin like receptors" "471|1181" 2000-01-11 2016-01-14 2016-01-14 11026 uc061edb.1 U91926 NM_006865 Q8N6C8 "9278324|9548455" LILRA3 604818 CD85e +HGNC:15503 LILRA4 leukocyte immunoglobulin like receptor A4 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "ILT7|CD85g" leucocyte Ig-like receptor A4 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 4 "CD molecules|Activating leukocyte immunoglobulin like receptors" "471|1181" 2005-05-17 2016-01-14 2016-10-05 23547 ENSG00000239961 OTTHUMG00000065355 uc002qfj.4 AF041261 NM_012276 CCDS12890 P59901 10941842 LILRA4 607517 objectId:2896 CD85g +HGNC:16309 LILRA5 leukocyte immunoglobulin like receptor A5 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "ILT11|LIR9|CD85|CD85f" leucocyte Ig-like receptor A5 LILRB7 leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5 "CD molecules|Activating leukocyte immunoglobulin like receptors" "471|1181" 2005-04-14 2005-05-13 2016-01-14 2016-10-05 353514 ENSG00000187116 OTTHUMG00000065357 uc032idp.1 AF212842 NM_181985 "CCDS12888|CCDS12889" A6NI73 10941842 MGI:3647196 LILRA5 606047 I43.001 CD85f +HGNC:15495 LILRA6 leukocyte immunoglobulin like receptor A6 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "ILT8|CD85b" leucocyte Ig-like receptor A6 LILRB6 "leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 6|leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6" "CD molecules|Activating leukocyte immunoglobulin like receptors" "471|1181" 2005-04-14 2005-05-17 2016-01-14 2016-10-05 79168 ENSG00000244482 OTTHUMG00000066635 uc032idf.2 AF041262 NM_024318 CCDS42610 Q6PI73 10941842 LILRA6 CD85b +HGNC:6605 LILRB1 leukocyte immunoglobulin like receptor B1 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "LIR-1|ILT2|MIR-7|CD85|LIR1|CD85j|PIRB|PIR-B" "myeloid inhibitory receptor 7|leucocyte Ig-like receptor B1" leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 1 "CD molecules|Inhibitory leukocyte immunoglobulin like receptors" "471|1182" 2000-01-11 2016-01-14 2016-03-15 10859 ENSG00000104972 OTTHUMG00000065695 uc032iei.2 AF009220 XM_011526331 "CCDS42614|CCDS42615|CCDS42616|CCDS42617|CCDS62803" Q8NHL6 "9285411|9382880" LILRB1 604811 I43.951 CD85j +HGNC:6606 LILRB2 leukocyte immunoglobulin like receptor B2 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "LIR-2|ILT4|MIR-10|LIR2|CD85d|MIR10" "myeloid inhibitory receptor 10|leucocyte Ig-like receptor B2" leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 2 "CD molecules|Inhibitory leukocyte immunoglobulin like receptors" "471|1182" 2000-01-11 2016-01-14 2016-01-14 10288 ENSG00000131042 OTTHUMG00000064896 uc032idl.2 AF000574 NM_005874 "CCDS12886|CCDS42612|CCDS62791|CCDS62792" Q8N423 "9151699|9079806" RGD:1582781 LILRB2 604815 CD85d +HGNC:6607 LILRB3 leukocyte immunoglobulin like receptor B3 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "LIR-3|HL9|ILT5|LIR3|CD85a|PIRB|PIR-B" leucocyte Ig-like receptor B3 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 3 "CD molecules|Inhibitory leukocyte immunoglobulin like receptors" "471|1182" 2000-01-11 2016-01-14 2016-10-05 11025 ENSG00000204577 OTTHUMG00000066626 uc061coq.1 U91928 NM_006864 "CCDS33105|CCDS46175" O75022 "9278324|9382880" "MGI:894311|MGI:1195969|MGI:1195970|MGI:1195971|MGI:3705216|MGI:3709645|MGI:3805553" RGD:1566307 LILRB3 604820 CD85a +HGNC:6608 LILRB4 leukocyte immunoglobulin like receptor B4 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "LIR-5|ILT3|HM18|LIR5|CD85k" leucocyte Ig-like receptor B4 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 "CD molecules|Inhibitory leukocyte immunoglobulin like receptors" "471|1182" 2000-01-11 2016-01-14 2016-01-14 11006 ENSG00000186818 OTTHUMG00000065879 uc002qgp.5 U82979 XM_017026215 "CCDS12902|CCDS42618" Q8NHJ6 "9151699|9079806" "MGI:102701|MGI:102702" LILRB4 604821 CD85k +HGNC:6609 LILRB5 leukocyte immunoglobulin like receptor B5 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "LIR-8|LIR8|CD85c" leucocyte Ig-like receptor B5 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 5 "CD molecules|Inhibitory leukocyte immunoglobulin like receptors" "471|1182" 2000-01-11 2016-01-14 2016-01-14 10990 ENSG00000105609 OTTHUMG00000066636 uc002qex.4 AF025534 XM_011526359 "CCDS12885|CCDS42611|CCDS46176" O75023 9548455 LILRB5 604814 CD85c +HGNC:15496 LILRP1 leukocyte immunoglobulin-like receptor pseudogene 1 pseudogene pseudogene Approved 19q13.42 19q13.42 "ILT9|CD85l|LILRA6P" CD molecules 471 2005-05-13 2016-10-05 79167 ENSG00000186152 OTTHUMG00000065881 AF072102 NG_002681 10941842 CD85l +HGNC:15497 LILRP2 leukocyte immunoglobulin-like receptor pseudogene 2 pseudogene pseudogene Approved 19q13.42 19q13.42 "ILT10|CD85m" CD molecules 471 2005-05-17 2015-01-30 79166 ENSG00000170858 OTTHUMG00000065886 AF072100 NM_024317 10941842 CD85m +HGNC:6610 LIM2 lens intrinsic membrane protein 2 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "MP19|MP17" "lens intrinsic membrane protein 2 (19kD)|lens intrinsic membrane protein 2, 19kDa" 1992-12-04 2015-11-09 2015-11-09 3982 ENSG00000105370 OTTHUMG00000182896 uc002pwm.3 NM_030657 "CCDS12831|CCDS59415" P55344 1606837 MGI:104698 RGD:621482 LIM2 154045 159976 +HGNC:24636 LIMA1 LIM domain and actin binding 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 EPLIN epithelial protein lost in neoplasm beta LIM domain containing 1218 2006-02-22 2014-11-19 51474 ENSG00000050405 OTTHUMG00000169852 uc001rwj.5 AF198454 NM_016357 "CCDS8802|CCDS44877|CCDS55826|CCDS58230" Q9UHB6 "10806352|10618726|12566430" MGI:1920992 RGD:1564050 LIMA1 608364 +HGNC:29191 LIMCH1 LIM and calponin homology domains 1 protein-coding gene gene with protein product Approved 4p13 04p13 "DKFZP686A01247|LIMCH1A|LMO7B" LIM domain containing 1218 2007-06-14 2008-01-09 2015-08-25 22998 ENSG00000064042 OTTHUMG00000160575 uc003gvu.6 AB029025 NM_014988 "CCDS33977|CCDS47047|CCDS54763|CCDS54764|CCDS54765|CCDS75119|CCDS75121|CCDS82919|CCDS82920" Q9UPQ0 10470851 MGI:1924819 RGD:1305269 LIMCH1 +HGNC:6612 LIMD1 LIM domains containing 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 LIM domain containing 1218 1999-01-15 2014-11-19 8994 ENSG00000144791 OTTHUMG00000133453 uc003coq.4 AJ132408 NM_014240 CCDS2729 Q9UGP4 10647888 MGI:1352502 RGD:1309830 LIMD1 604543 +HGNC:44107 LIMD1-AS1 LIMD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 LIMD1 antisense RNA 1 (non-protein coding) 2012-06-28 2012-08-15 2012-10-12 644714 ENSG00000230530 OTTHUMG00000156652 uc062ixr.1 AK026206 NR_033947 +HGNC:28142 LIMD2 LIM domain containing 2 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 MGC10986 LIM domain containing 1218 2006-01-24 2014-11-19 80774 ENSG00000136490 OTTHUMG00000178907 uc002jbj.5 AK092301 NM_030576 CCDS11641 Q9BT23 12477932 MGI:1915053 RGD:1309967 LIMD2 +HGNC:26016 LIME1 Lck interacting transmembrane adaptor 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FLJ20406|dJ583P15.4|LIME" 2005-04-25 2014-11-18 54923 ENSG00000203896 OTTHUMG00000032999 uc002ygp.5 AK000413 NM_017806 "CCDS13536|CCDS82638" Q9H400 12477932 MGI:1919949 RGD:1562795 LIME1 609809 +HGNC:6613 LIMK1 LIM domain kinase 1 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 LIMK "LIM domain containing|PDZ domain containing" "1218|1220" 1996-03-14 2015-09-03 3984 ENSG00000106683 OTTHUMG00000023448 uc003uaa.3 D26309 NM_002314 "CCDS5563|CCDS56491" P53667 "8673124|8812460" MGI:104572 RGD:62055 LIMK1 601329 123060 objectId:2054 +HGNC:6614 LIMK2 LIM domain kinase 2 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "LIM domain containing|PDZ domain containing" "1218|1220" 1997-08-28 2016-10-05 3985 ENSG00000182541 OTTHUMG00000151251 uc003akh.4 D45906 NM_016733 "CCDS13891|CCDS13892|CCDS33637" P53671 "8537403|10591208" MGI:1197517 RGD:62056 LIMK2 601988 objectId:2055 +HGNC:6616 LIMS1 LIM zinc finger domain containing 1 protein-coding gene gene with protein product Approved 2q12.3 02q12.3 "PINCH|PINCH1" "particularly interesting new Cys-His protein 1|senescent cell antigen" "LIM and senescent cell antigen-like domains 1|LIM-type zinc finger domains 1" "LIM zinc finger domain containing|LIM domain containing" "1163|1218" 1998-01-15 2016-02-12 2016-02-12 3987 ENSG00000169756 OTTHUMG00000130983 uc002teh.3 NM_004987 "CCDS2078|CCDS54382|CCDS54383|CCDS54384|CCDS54385" P48059 "7517666|10022929" MGI:1195263 RGD:1560732 LIMS1 602567 +HGNC:40342 LIMS1-AS1 LIMS1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q12.3 02q12.3 2015-03-11 2015-03-11 106182118 ENSG00000228763 OTTHUMG00000153229 AA861200 +HGNC:16084 LIMS2 LIM zinc finger domain containing 2 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "PINCH2|PINCH-2" particularly interesting new Cys-His protein 2 "LIM and senescent cell antigen-like domains 2|LIM-type zinc finger domains 2" LIM zinc finger domain containing 1163 2001-07-26 2016-02-12 2016-10-05 55679 ENSG00000072163 OTTHUMG00000131529 uc002tox.4 AF520987 NM_017980 "CCDS2147|CCDS54394|CCDS54395|CCDS54396|CCDS58725" Q7Z4I7 12167643 MGI:2385067 RGD:1305273 LIMS2 607908 +HGNC:30047 LIMS3 LIM zinc finger domain containing 3 protein-coding gene gene with protein product Approved 2q13 02q13 pinch 2 "LIM and senescent cell antigen-like domains 3|LIM-type zinc finger domains 3" "LIM zinc finger domain containing|LIM domain containing" "1163|1218" 2004-02-13 2016-02-12 2016-02-12 96626 ENSG00000256977 OTTHUMG00000131197 uc284ppv.1 AF288404 NM_033514 CCDS2084 P0CW19 LIMS3 +HGNC:39941 LIMS4 LIM zinc finger domain containing 4 protein-coding gene gene with protein product Approved 2q13 02q13 LIMS3L "LIM and senescent cell antigen-like domains 3-like|LIM-type zinc finger domains 4" LIM zinc finger domain containing 1163 2011-04-14 2016-01-06 2016-02-12 2016-02-12 100288695 ENSG00000256671 OTTHUMG00000169984 uc284ppx.1 AK298340 NM_001205288 CCDS54387 P0CW20 +HGNC:17787 LIN7A lin-7 homolog A, crumbs cell polarity complex component protein-coding gene gene with protein product Approved 12q21.31 12q21.31 "MALS-1|TIP-33|LIN-7A|VELI1" mammalian LIN-7 1 lin-7 homolog A (C. elegans) "PDZ domain containing|Crumbs complex" "1220|1223" 2002-09-19 2016-02-22 2016-02-22 8825 ENSG00000111052 OTTHUMG00000170168 uc001szi.4 AF028826 NM_004664 CCDS9021 O14910 "10341223|17237226" MGI:2135609 RGD:621256 LIN7A 603380 +HGNC:17788 LIN7B lin-7 homolog B, crumbs cell polarity complex component protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "MALS-2|LIN-7B|VELI2" lin-7 homolog B (C. elegans) "PDZ domain containing|Crumbs complex" "1220|1223" 2002-09-19 2016-02-22 2016-10-05 64130 ENSG00000104863 OTTHUMG00000134288 uc002pmp.3 AF311862 NM_022165 "CCDS12757|CCDS77328" Q9HAP6 10341223 MGI:1330858 RGD:620730 LIN7B 612331 +HGNC:17789 LIN7C lin-7 homolog C, crumbs cell polarity complex component protein-coding gene gene with protein product Approved 11p14 11p14 "MALS-3|Lin7c|LIN-7C|LIN-7-C|VELI3|FLJ11215" LIN-7 protein 3 lin-7 homolog C (C. elegans) "PDZ domain containing|Crumbs complex" "1220|1223" 2002-09-19 2016-02-22 2016-02-22 55327 ENSG00000148943 OTTHUMG00000166193 uc001mrl.4 AK002077 NM_018362 CCDS7864 Q9NUP9 10341223 MGI:1330839 RGD:621164 LIN7C 612332 +HGNC:30830 LIN9 lin-9 DREAM MuvB core complex component protein-coding gene gene with protein product Approved 1q42.12 01q42.12 TGS "TUDOR gene similar|rb related pathway actor" lin-9 homolog (C. elegans) 2004-11-16 2014-07-17 2016-10-05 286826 ENSG00000183814 OTTHUMG00000037557 uc001hqa.4 AY166858 NM_173083 CCDS1553 Q5TKA1 "15538385|23667535" MGI:1919818 RGD:1591104 LIN9 609375 +HGNC:15986 LIN28A lin-28 homolog A protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "LIN-28|FLJ12457|ZCCHC1|CSDD1" LIN28 lin-28 homolog (C. elegans) Zinc fingers CCHC-type 74 2003-07-21 2010-04-06 2016-02-25 2016-10-05 79727 ENSG00000131914 OTTHUMG00000003550 uc001bmj.4 AF521099 NM_024674 CCDS280 Q9H9Z2 12798299 MGI:1890546 RGD:1566408 LIN28A 611043 +HGNC:38055 LIN28AP1 LIN28A pseudogene 1 pseudogene pseudogene Approved 2q32.1 02q32.1 lin-28 homolog A (C. elegans) pseudogene 1 2010-04-06 2013-09-12 2014-11-19 129402 ENSG00000213120 OTTHUMG00000154267 NG_021592 PGOHUM00000241038 +HGNC:38056 LIN28AP2 LIN28A pseudogene 2 pseudogene pseudogene Approved 13q31.2 13q31.2 lin-28 homolog A (C. elegans) pseudogene 2 2010-04-06 2013-09-12 2014-11-19 100287388 ENSG00000228473 OTTHUMG00000017164 NG_022998 PGOHUM00000248452 +HGNC:38057 LIN28AP3 LIN28A pseudogene 3 pseudogene pseudogene Approved 20p12.2 20p12.2 lin-28 homolog A (C. elegans) pseudogene 3 2010-04-06 2013-09-12 2014-11-19 441940 NG_021975 PGOHUM00000247445 +HGNC:32207 LIN28B lin-28 homolog B protein-coding gene gene with protein product Approved 6q16.3-q21 06q16.3-q21 "FLJ16517|CSDD2" lin-28 homolog B (C. elegans) 2005-08-22 2016-02-25 2016-10-11 389421 ENSG00000187772 OTTHUMG00000015290 uc003pqv.2 AK131411 NM_001004317 CCDS34504 Q6ZN17 MGI:3584032 RGD:1597432 LIN28B 611044 315424 +HGNC:21553 LIN28B-AS1 LIN28B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q16.3 06q16.3 dJ439I14.1 "C6orf220|LINC00577" "chromosome 6 open reading frame 220|long intergenic non-protein coding RNA 577" 2007-08-02 2016-02-25 2016-02-25 2016-10-05 100113403 ENSG00000203809 OTTHUMG00000015289 uc031spf.1 "AW612153|BF223582" NR_046407 +HGNC:33234 LIN37 lin-37 DREAM MuvB core complex component protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "ZK418.4|F25965|lin-37" lin-37 homolog (C. elegans) 2007-05-17 2014-07-17 2014-07-17 55957 ENSG00000267796 OTTHUMG00000182070 uc021usw.1 BC008939 NM_019104 CCDS62642 Q96GY3 21498570 MGI:1922910 RGD:1308901 LIN37 +HGNC:19856 LIN52 lin-52 DREAM MuvB core complex component protein-coding gene gene with protein product Approved 14q24.3 14q24.3 C14orf46 "chromosome 14 open reading frame 46|lin-52 homolog (C. elegans)" 2002-11-27 2007-01-03 2014-07-17 2016-10-05 91750 ENSG00000205659 OTTHUMG00000171204 uc001xpp.3 AK023979 XM_011537320 CCDS32120 Q52LA3 "17075059|21498570" MGI:3045391 RGD:1306798 LIN52 +HGNC:25397 LIN54 lin-54 DREAM MuvB core complex component protein-coding gene gene with protein product Approved 4q21.22 04q21.22 "MIP120|DKFZp686L1814|JC8.6|CXCDC1|TCX1" CXC domain containing 1 lin-54 homolog (C. elegans) 2007-01-03 2014-07-17 2016-02-26 132660 ENSG00000189308 OTTHUMG00000130287 uc003hnx.5 BX537919 NM_194282 "CCDS3599|CCDS47089|CCDS75157" Q6MZP7 21498570 MGI:2140902 RGD:1311361 LIN54 613367 +HGNC:26885 LINC-PINT long intergenic non-protein coding RNA, p53 induced transcript non-coding RNA RNA, long non-coding Approved 7q32.3 07q32.3 "FLJ43663|PINT|LincRNA-Pint" p53 induced noncoding transcript MKLN1-AS1 MKLN1 antisense RNA 1 (head to head) Long non-coding RNAs 788 2013-07-23 2013-10-07 2013-10-07 2014-11-19 378805 ENSG00000231721 OTTHUMG00000155000 BC130416 NR_015431 "24070194|24381249" MGI:2673128 +HGNC:43773 LINC-ROR long intergenic non-protein coding RNA, regulator of reprogramming non-coding RNA RNA, long non-coding Approved 18q21.31 18q21.31 "lincRNA-RoR|lincRNA-ST8SIA3|ROR" Long non-coding RNAs 788 2012-05-01 2015-07-15 100885779 ENSG00000258609 OTTHUMG00000171587 uc031ril.2 HQ315778 NR_048536 "21057500|23208419|23541921|23597480|24463816" 615173 lincRNA-RoR +HGNC:16224 LINC00028 long intergenic non-protein coding RNA 28 non-coding RNA RNA, long non-coding Approved 20q11.21 20q11.21 dJ1093G12.6 "C20orf93|NCRNA00028" "chromosome 20 open reading frame 93|non-protein coding RNA 28" 2001-07-17 2011-08-10 2011-08-10 2012-10-12 140875 ENSG00000233354 OTTHUMG00000032166 uc010ztn.1 AL121751 NR_024358 +HGNC:16184 LINC00029 long intergenic non-protein coding RNA 29 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 bA305P22.4 "C20orf51|NCRNA00029" "chromosome 20 open reading frame 51|non-protein coding RNA 29" 2001-07-17 2011-08-10 2011-08-10 2013-08-16 100144596 ENSG00000125514 OTTHUMG00000032950 uc061ykm.1 "AL117533|BC069708|BC134343" NR_028295 11780052 +HGNC:16506 LINC00032 long intergenic non-protein coding RNA 32 non-coding RNA RNA, long non-coding Approved 9p21 09p21 "C9orf14|NCRNA00032" "chromosome 9 open reading frame 14|non-protein coding RNA 32" 2001-09-10 2011-08-10 2011-08-10 2012-10-12 158035 ENSG00000231459 OTTHUMG00000019711 uc010mjd.2 AF418573 NR_026679 P0C843 +HGNC:32028 LINC00051 long intergenic non-protein coding RNA 51 non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 "C8orf43|NCRNA00051" "chromosome 8 open reading frame 43|non-protein coding RNA 51" 2005-10-04 2011-08-10 2011-08-10 2012-10-12 619434 ENSG00000254008 OTTHUMG00000164636 uc011ljt.2 BC008253 NR_024378 +HGNC:26455 LINC00052 long intergenic non-protein coding RNA 52 non-coding RNA RNA, long non-coding Approved 15q25.3 15q25.3 FLJ31461 "TMEM83|NCRNA00052" "transmembrane protein 83|non-protein coding RNA 52" 2005-10-25 2011-08-10 2011-08-10 2012-10-12 145978 ENSG00000259527 OTTHUMG00000171964 uc002bmc.2 AK056023 XR_017978 Q96N35 +HGNC:34521 LINC00083 long intergenic non-protein coding RNA 83 non-coding RNA RNA, long non-coding Approved 1q25.2 01q25.2 "FLJ44005|RP4-593C16.2" NCRNA00083 non-protein coding RNA 83 2008-09-02 2011-08-11 2011-08-11 2014-11-19 400797 ENSG00000188585 OTTHUMG00000035021 uc057nok.1 AK125993 XR_040317 Q6ZU45 RGD:7603387 +HGNC:31408 LINC00092 long intergenic non-protein coding RNA 92 non-coding RNA RNA, long non-coding Approved 9q22.32 09q22.32 bA346B7.1 NCRNA00092 non-protein coding RNA 92 2008-09-03 2011-08-11 2011-08-11 2012-10-12 100188953 ENSG00000225194 OTTHUMG00000020288 uc064unx.1 BC043559 NR_024129 +HGNC:24742 LINC00094 long intergenic non-protein coding RNA 94 non-coding RNA RNA, long non-coding Approved 9q34.2 09q34.2 "FLJ35348|bA374P20.3" NCRNA00094 non-protein coding RNA 94 2008-09-03 2011-08-11 2011-08-11 2016-10-05 266655 ENSG00000235106 OTTHUMG00000020880 uc064wwq.1 AK092667 NR_015427 12477932 +HGNC:30470 LINC00102 long intergenic non-protein coding RNA 102 non-coding RNA RNA, long non-coding Approved Xp22.33 and Yp11.31 Xp22.33 and Yp11.31 OTTHUMT00000055623 NCRNA00102 non-protein coding RNA 102 Pseudoautosomal region 1 715 2008-09-05 2011-08-11 2011-08-11 2012-10-12 100359394 ENSG00000230542 OTTHUMG00000021072 uc033fdg.2 NR_037842 +HGNC:31843 LINC00106 long intergenic non-protein coding RNA 106 non-coding RNA RNA, long non-coding Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 OTTHUMG00000021061 "CXYorf8|NCRNA00106" "chromosome X and Y open reading frame 8|non-protein coding RNA 106" Pseudoautosomal region 1 715 2006-06-30 2011-08-11 2011-08-11 2012-10-12 751580 ENSG00000236871 OTTHUMG00000021061 uc065cnr.1 NR_130733 +HGNC:31847 LINC00108 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:1262 LINC00111 long intergenic non-protein coding RNA 111 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "C21orf21|NCRNA00111" "chromosome 21 open reading frame 21|non-protein coding RNA 111" 2000-05-23 2011-08-11 2011-08-11 2012-10-12 54090 ENSG00000227702 OTTHUMG00000086772 uc011aes.2 BX099637 NR_024367 +HGNC:1263 LINC00112 long intergenic non-protein coding RNA 112 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "C21orf22|NCRNA00112" "chromosome 21 open reading frame 22|non-protein coding RNA 112" 2000-05-23 2011-08-11 2011-08-11 2012-10-12 54089 ENSG00000232401 OTTHUMG00000086769 uc002yzm.4 NR_024028 +HGNC:1264 LINC00113 long intergenic non-protein coding RNA 113 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 "C21orf23|NCRNA00113" "chromosome 21 open reading frame 23|non-protein coding RNA 113" 2000-05-23 2011-08-11 2011-08-11 2012-10-12 54088 ENSG00000225298 OTTHUMG00000078708 uc061zix.1 NR_024357 +HGNC:1265 LINC00114 long intergenic non-protein coding RNA 114 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 "C21orf24|NCRNA00114" "chromosome 21 open reading frame 24|non-protein coding RNA 114" 2000-05-23 2011-08-11 2011-08-11 2014-11-19 400866 ENSG00000223806 OTTHUMG00000090771 uc062aco.1 XR_041645 Q6XXX2 611723 +HGNC:26211 LINC00115 long intergenic non-protein coding RNA 115 non-coding RNA RNA, long non-coding Approved 1p36.33 01p36.33 FLJ22639 NCRNA00115 non-protein coding RNA 115 2008-09-12 2011-08-11 2011-08-11 2014-11-18 79854 ENSG00000225880 OTTHUMG00000141258 uc010nxx.3 BC017762 XR_017693 12477932 +HGNC:27339 LINC00116 long intergenic non-protein coding RNA 116 other unknown Approved 2q13 02q13 NCRNA00116 non-protein coding RNA 116 2008-09-12 2013-12-05 2013-12-05 2016-09-27 205251 ENSG00000175701 OTTHUMG00000131194 uc002tfq.3 BC031315 NR_027063 Q8NCU8 RGD:10401149 +HGNC:1283 LINC00158 long intergenic non-protein coding RNA 158 non-coding RNA RNA, long non-coding Approved 21q21.2 21q21.2 "C21orf42|NCRNA00158" "chromosome 21 open reading frame 42|non-protein coding RNA 158" 2000-05-23 2011-08-11 2011-08-11 2016-10-05 54072 ENSG00000185433 OTTHUMG00000078368 uc002ylk.3 NR_024027 P58513 +HGNC:1285 LINC00159 long intergenic non-protein coding RNA 159 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 "C21orf44|NCRNA00159" "chromosome 21 open reading frame 44|non-protein coding RNA 159" 2000-05-23 2011-08-11 2011-08-11 2012-10-12 100551499 ENSG00000230323 OTTHUMG00000085307 uc021wij.2 NR_038033 +HGNC:1294 LINC00160 long intergenic non-protein coding RNA 160 non-coding RNA RNA, long non-coding Approved 21q22.12 21q22.12 "C21orf52|NCRNA00160" "chromosome 21 open reading frame 52|non-protein coding RNA 160" 2000-05-23 2011-08-11 2011-08-11 2015-11-05 54064 ENSG00000230978 OTTHUMG00000086234 uc031rvf.2 NR_024351 26426411 +HGNC:17138 LINC00161 long intergenic non-protein coding RNA 161 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 "C21orf100|NCRNA00161" "chromosome 21 open reading frame 100|non-protein coding RNA 161" 2001-11-21 2011-08-11 2011-08-11 2016-10-03 118421 ENSG00000226935 OTTHUMG00000078748 uc002ymn.3 AY063458 NR_026552 "12036297|27609068" +HGNC:33165 LINC00163 long intergenic non-protein coding RNA 163 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "NLC1-A|NLC1A" "narcolepsy candidate-region 1 gene A|narcolepsy candidate region gene 1A" "C21orf134|NCRNA00163" "chromosome 21 open reading frame 134|non-protein coding RNA 163" Long non-coding RNAs 788 2007-08-15 2011-08-11 2011-08-11 2014-11-18 727699 ENSG00000234880 OTTHUMG00000090296 uc021wjz.1 BC036902 NR_033840 16826516 610259 +HGNC:33166 LINC00165 long intergenic non-protein coding RNA 165 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 NLC1-B narcolepsy candidate-region 1 gene B "C21orf135|NCRNA00165" "chromosome 21 open reading frame 135|non-protein coding RNA 165" Long non-coding RNAs 788 2007-08-15 2011-08-11 2011-08-11 2014-11-18 727701 ENSG00000261706 OTTHUMG00000172755 uc062avc.1 BC009635 16826516 +HGNC:30468 LINC00167 long intergenic non-protein coding RNA 167 non-coding RNA RNA, long non-coding Approved 11q24.3 11q24.3 FLJ31394 "C11orf37|NCRNA00167" "chromosome 11 open reading frame 37|non-protein coding RNA 167" 2005-09-18 2011-08-11 2011-08-11 2012-10-12 440072 ENSG00000233220 OTTHUMG00000165763 uc058jcj.1 AK055956 XR_040639 Q96N53 +HGNC:33791 LINC00173 long intergenic non-protein coding RNA 173 non-coding RNA RNA, long non-coding Approved 12q24.22 12q24.22 FLJ42957 NCRNA00173 non-protein coding RNA 173 2009-03-16 2011-08-11 2011-08-11 2012-10-12 100287569 ENSG00000196668 OTTHUMG00000157726 uc001tvy.3 "AC090670|BC038547|BC121822" NR_027345 Q6ZV60 +HGNC:27788 LINC00174 long intergenic non-protein coding RNA 174 non-coding RNA RNA, long non-coding Approved 7q11.21 07q11.21 NCRNA00174 non-protein coding RNA 174 2009-03-18 2013-12-05 2013-12-05 2014-11-18 285908 ENSG00000179406 OTTHUMG00000156590 uc003tux.5 AK091213 NR_026873 +HGNC:27655 LINC00176 long intergenic non-protein coding RNA 176 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 "DKFZp434G015|FLJ27267" "PRR17|NCRNA00176" "proline rich 17|non-protein coding RNA 176" 2006-08-24 2011-08-11 2011-08-11 2015-10-14 284739 ENSG00000196421 OTTHUMG00000033015 uc002yhq.4 NR_027686 Q6ZNR8 RGD:1561282 +HGNC:37192 LINC00184 long intergenic non-protein coding RNA 184 non-coding RNA RNA, long non-coding Approved 1q42.3 01q42.3 HANC NCRNA00184 non-protein coding RNA 184 2009-08-18 2011-08-11 2011-08-11 2014-11-19 100302691 ENSG00000224939 OTTHUMG00000037979 uc021pkr.1 AJ421679 NR_033927 +HGNC:18461 LINC00189 long intergenic non-protein coding RNA 189 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 "C21orf109|NCRNA00189" "chromosome 21 open reading frame 109|non-protein coding RNA 189" 2002-07-05 2011-08-11 2011-08-11 2016-10-05 193629 ENSG00000215533 OTTHUMG00000078876 uc061zky.1 AF490769 NR_027072 12036298 +HGNC:30974 LINC00200 long intergenic non-protein coding RNA 200 non-coding RNA RNA, long non-coding Approved 10p15.3 10p15.3 FLJ40354 "C10orf139|NCRNA00200" "chromosome 10 open reading frame 139|non-protein coding RNA 200" 2007-08-02 2011-08-11 2011-08-11 2014-11-18 399706 ENSG00000229205 OTTHUMG00000017539 uc010qag.1 AK097673 NR_015376 +HGNC:24672 LINC00202-1 long intergenic non-protein coding RNA 202-1 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 bB27G4.1 "C10orf51|NCRNA00202|LINC00202" "chromosome 10 open reading frame 51|non-protein coding RNA 202|long intergenic non-protein coding RNA 202" 2004-05-27 2012-12-18 2012-12-18 2014-11-18 387644 ENSG00000232224 OTTHUMG00000017849 uc001itf.2 AK097405 NR_026795 +HGNC:44917 LINC00202-2 long intergenic non-protein coding RNA 202-2 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 2012-12-18 2013-07-05 731789 ENSG00000231976 OTTHUMG00000017842 uc057sir.1 NR_026794 +HGNC:16420 LINC00205 long intergenic non-protein coding RNA 205 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "C21orf86|NCRNA00205" "chromosome 21 open reading frame 86|non-protein coding RNA 205" 2001-08-24 2011-08-11 2011-08-11 2015-07-09 102723489 ENSG00000223768 OTTHUMG00000090403 uc062avz.1 AF426264 P59089 12036297 +HGNC:37255 LINC00207 long intergenic non-protein coding RNA 207 non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 NCRNA00207 non-protein coding RNA 207 2009-10-02 2011-08-11 2011-08-11 2014-11-19 388910 ENSG00000187012 OTTHUMG00000150462 uc011aqg.3 BC144508 NR_028409 LINC00207 +HGNC:15535 LINC00208 long intergenic non-protein coding RNA 208 non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 "C8orf14|NCRNA00208" "chromosome 8 open reading frame 14|non-protein coding RNA 208" 2001-04-25 2011-08-11 2011-08-11 2012-10-12 83655 ENSG00000170983 OTTHUMG00000161738 uc022arx.2 AJ291678 NR_040035 Q96KT6 +HGNC:37458 LINC00210 long intergenic non-protein coding RNA 210 non-coding RNA RNA, long non-coding Approved 1q41 01q41 RP11-72L13.1 NCRNA00210 non-protein coding RNA 210 2009-10-15 2011-08-11 2011-08-11 2012-10-12 100885798 ENSG00000231814 OTTHUMG00000039497 uc031psc.1 NR_048550 +HGNC:37459 LINC00211 long intergenic non-protein coding RNA 211 non-coding RNA RNA, long non-coding Approved 2p22.2 02p22.2 NCRNA00211 non-protein coding RNA 211 2009-10-16 2011-08-11 2011-08-11 2014-01-06 101929559 ENSG00000237803 OTTHUMG00000152169 uc032njt.2 NR_110012 +HGNC:20191 LINC00216 long intergenic non-protein coding RNA 216 non-coding RNA RNA, long non-coding Approved 14q22.3 14q22.3 PRO1617 "C14orf107|NCRNA00216" "chromosome 14 open reading frame 107|non-protein coding RNA 216" 2002-12-20 2011-08-11 2011-08-11 2012-10-12 55451 ENSG00000279636 OTTHUMG00000187383 uc059bzc.1 AF116641 +HGNC:20169 LINC00221 long intergenic non-protein coding RNA 221 non-coding RNA RNA, long non-coding Approved 14q32.33 14q32.33 "C14orf98|NCRNA00221" "chromosome 14 open reading frame 98|non-protein coding RNA 221" 2003-01-13 2011-08-11 2011-08-11 2015-01-29 338005 ENSG00000270816 OTTHUMG00000152084 uc059ggn.1 AK058096 NR_027457 +HGNC:21560 LINC00222 long intergenic non-protein coding RNA 222 non-coding RNA RNA, long non-coding Approved 6q21 06q21 dJ354J5.2 "C6orf181|NCRNA00222" "chromosome 6 open reading frame 181|non-protein coding RNA 222" 2003-11-26 2011-08-11 2011-08-11 2014-11-19 387111 ENSG00000203801 OTTHUMG00000015330 uc003psp.2 AY927445 NR_033376 +HGNC:20168 LINC00226 long intergenic non-protein coding RNA 226 non-coding RNA RNA, long non-coding Approved 14q32.33 14q32.33 "C14orf97|NCRNA00226" "chromosome 14 open reading frame 97|non-protein coding RNA 226" 2003-01-13 2011-08-11 2011-08-11 2015-01-29 338004 ENSG00000276210 OTTHUMG00000152078 uc032bnj.2 AW205017 NR_033375 +HGNC:13240 LINC00229 long intergenic non-protein coding RNA 229 non-coding RNA RNA, long non-coding Approved 22q13.3 22q13.3 dJ474I12.C22.2 "C22orf10|NCRNA00229" "chromosome 22 open reading frame 10|non-protein coding RNA 229" 2004-06-07 2011-08-11 2011-08-11 2012-10-12 414351 ENSG00000234300 OTTHUMG00000149974 uc062ezq.1 NR_044991 +HGNC:14138 LINC00235 long intergenic non-protein coding RNA 235 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 "C16orf10|NCRNA00235" "chromosome 16 open reading frame 10|non-protein coding RNA 235" 2000-12-21 2011-08-11 2011-08-11 2012-10-12 64493 ENSG00000277142 OTTHUMG00000186631 uc010uuh.2 AW298011 NR_024121 +HGNC:38166 LINC00237 long intergenic non-protein coding RNA 237 non-coding RNA RNA, long non-coding Approved 20p11.23 20p11.23 NCRNA00237 non-protein coding RNA 237 2010-06-28 2011-08-11 2011-08-11 2014-04-07 101180898 ENSG00000225127 OTTHUMG00000032017 uc061vtk.1 23034868 614992 +HGNC:20100 LINC00238 long intergenic non-protein coding RNA 238 non-coding RNA RNA, long non-coding Approved 14q23.3 14q23.3 "C14orf53|NCRNA00238" "chromosome 14 open reading frame 53|non-protein coding RNA 238" 2002-12-18 2011-08-11 2011-08-11 2012-10-12 440184 ENSG00000196553 OTTHUMG00000029779 uc059cnh.1 NR_024338 RGD:1562540 +HGNC:20119 LINC00239 long intergenic non-protein coding RNA 239 non-coding RNA RNA, long non-coding Approved 14q32.31 14q32.31 "C14orf72|NCRNA00239" "chromosome 14 open reading frame 72|non-protein coding RNA 239" 2002-12-18 2011-08-11 2011-08-11 2012-10-12 145200 ENSG00000258512 OTTHUMG00000171596 uc059fim.1 NR_026774 +HGNC:18772 LINC00240 long intergenic non-protein coding RNA 240 non-coding RNA RNA, long non-coding Approved 6p22.2 06p22.2 bA373D17.1 "C6orf41|NCRNA00240" "chromosome 6 open reading frame 41|non-protein coding RNA 240" 2003-11-26 2011-08-11 2011-08-11 2016-10-05 100133205 ENSG00000224843 OTTHUMG00000014466 uc063mis.1 NR_026775 +HGNC:21249 LINC00242 long intergenic non-protein coding RNA 242 non-coding RNA RNA, long non-coding Approved 6q27 06q27 "FLJ31451|dJ266L20.5" "C6orf122|NCRNA00242" "chromosome 6 open reading frame 122|non-protein coding RNA 242" 2003-11-26 2011-08-11 2011-08-11 2016-10-05 401288 ENSG00000229214 OTTHUMG00000016064 uc003qxj.2 AK056013 NR_026781 Q5T6M2 +HGNC:30956 LINC00243 long intergenic non-protein coding RNA 243 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 "bQB230F21.2|FLJ40693|bQB10J12.2" "C6orf214|NCRNA00243" "chromosome 6 open reading frame 214 (putative)|non-protein coding RNA 243" 2004-01-16 2011-08-11 2011-08-11 2015-08-26 401247 ENSG00000214894 OTTHUMG00000031239 uc003nrp.2 AK098012 XR_001756778 +HGNC:13245 LINC00244 long intergenic non-protein coding RNA 244 non-coding RNA RNA, long non-coding Approved 7q36 07q36 "C7orf4|NCRNA00244" "chromosome 7 open reading frame 4|non-protein coding RNA 244" 2001-06-25 2011-08-11 2011-08-11 2012-10-12 64433 ENSG00000279418 OTTHUMG00000189434 uc011kvw.2 AF107456 NR_024119 10329000 +HGNC:31950 LINC00251 long intergenic non-protein coding RNA 251 non-coding RNA RNA, long non-coding Approved 8q13.1 08q13.1 "C8orf25|NCRNA00251" "chromosome 8 open reading frame 25|non-protein coding RNA 251" 2005-04-26 2011-08-11 2011-08-11 2012-10-12 552859 ENSG00000280725 OTTHUMG00000189557 uc022ave.2 BX110670 NR_038901 +HGNC:14160 LINC00254 long intergenic non-protein coding RNA 254 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 "C16orf32|NCRNA00254" "chromosome 16 open reading frame 32|non-protein coding RNA 254" 2000-12-21 2011-08-11 2011-08-11 2012-10-12 64735 ENSG00000281219 OTTHUMG00000189509 uc021tal.1 AI209093 NR_033914 +HGNC:28770 LINC00260 long intergenic non-protein coding RNA 260 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 MGC5457 "C1orf217|NCRNA00260" "chromosome 1 open reading frame 217|non-protein coding RNA 260" 2007-08-02 2011-08-11 2011-08-11 2014-11-18 84719 BC000988 NR_046213 12477932 +HGNC:16189 LINC00261 long intergenic non-protein coding RNA 261 non-coding RNA RNA, long non-coding Approved 20p11.21 20p11.21 "bA216C10.1|HCCDR1|TCONS_00027846|ALIEN|DEANR1|onco-lncRNA-17" "hepatocellular carcinoma down-regulated RNA 1|definitive endoderm-associated long non-coding RNA 1" "C20orf56|NCRNA00261" "chromosome 20 open reading frame 56|non-protein coding RNA 261" 2001-07-17 2013-07-03 2013-07-03 2015-07-29 140828 ENSG00000259974 OTTHUMG00000046240 uc010zsp.3 NR_001558 "23801869|22681909|25959816" +HGNC:17776 LINC00264 long intergenic non-protein coding RNA 264 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 bA128B16.2 "C10orf50|NCRNA00264" "chromosome 10 open reading frame 50|non-protein coding RNA 264" 2004-05-27 2011-08-11 2011-08-11 2014-11-19 645528 ENSG00000233261 OTTHUMG00000017839 uc001ist.4 XR_040540 +HGNC:28019 LINC00265 long intergenic non-protein coding RNA 265 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 NCRNA00265-1 non-protein coding RNA 265-1 NCRNA00265 non-protein coding RNA 265 2010-06-07 2011-08-11 2011-08-11 2014-11-18 349114 ENSG00000188185 OTTHUMG00000155273 uc003thf.4 NR_026999 12477932 +HGNC:38523 LINC00265-2P long intergenic non-protein coding RNA 265-2, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 "NCRNA00265B|NCRNA00265-2P" "non-protein coding RNA 265B|non-protein coding RNA 265-2, pseudogene" 2010-06-09 2011-08-11 2011-08-11 2014-11-19 100287296 ENSG00000224827 OTTHUMG00000045102 NG_029045 PGOHUM00000263352 +HGNC:38536 LINC00265-3P long intergenic non-protein coding RNA 265-3, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 "NCRNA00265C|NCRNA00265-3P" "non-protein coding RNA 265C|non-protein coding RNA 265-3, pseudogene" 2010-06-09 2011-08-11 2011-08-11 2014-11-18 100287470 ENSG00000233944 OTTHUMG00000045202 NG_029048 PGOHUM00000263347 +HGNC:16202 LINC00266-1 long intergenic non-protein coding RNA 266-1 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 bA476I15.3 "C20orf69|NCRNA00266|NCRNA00266-1" "chromosome 20 open reading frame 69|non-protein coding RNA 266|non-protein coding RNA 266-1" 2001-07-17 2011-08-11 2011-08-11 2012-10-12 140849 ENSG00000149656 OTTHUMG00000033036 uc061yrz.1 BC118988 NR_040415 +HGNC:38529 LINC00266-2P long intergenic non-protein coding RNA 266-2, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 NCRNA00266Y1 "NCRNA00266B|NCRNA00266-2P" "non-protein coding RNA 266B|non-protein coding RNA 266-2, pseudogene" 2010-06-08 2011-08-11 2011-08-11 2014-11-18 100287785 ENSG00000248792 OTTHUMG00000045104 XR_078677 +HGNC:21112 LINC00266-3 long intergenic non-protein coding RNA 266-3 non-coding RNA RNA, long non-coding Approved 6p25.3 06p25.3 dJ24O22.2 "C6orf88|NCRNA00266C|NCRNA00266-3" "chromosome 6 open reading frame 88|non-protein coding RNA 266C|non-protein coding RNA 266-3" 2003-11-26 2011-08-11 2011-08-11 2014-11-18 441123 ENSG00000170590 OTTHUMG00000014109 uc063lip.1 NR_109817 +HGNC:38800 LINC00266-4P long intergenic non-protein coding RNA 266-4, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 NCRNA00266Y2 "NCRNA00266D|NCRNA00266-4P" "non-protein coding RNA 266D|non-protein coding RNA 266-4, pseudogene" 2010-08-05 2011-08-11 2011-08-11 2014-11-18 100642176 ENSG00000228786 OTTHUMG00000045201 uc065cwf.1 NG_029404 +HGNC:38543 LINC00268 long intergenic non-protein coding RNA 268 non-coding RNA RNA, long non-coding Approved 9p11.2 09p11.2 "NCRNA00268A|NCRNA00268-1" NCRNA00268 non-protein coding RNA 268 2010-06-09 2011-08-11 2011-08-11 2012-10-12 441426 AK126863 +HGNC:37771 LINC00268-2P long intergenic non-protein coding RNA 268-2, pseudogene pseudogene pseudogene Approved Yq11.1 Yq11.1 "NCRNA00268B|NCRNA00268-2P" "non-protein coding RNA 268B|non-protein coding RNA 268-2, pseudogene" 2010-06-09 2011-08-11 2011-08-11 2011-08-11 100288610 NG_029034 +HGNC:26586 LINC00269 long intergenic non-protein coding RNA 269 non-coding RNA RNA, long non-coding Approved Xq13.1 Xq13.1 FLJ33610 "CXorf62|NCRNA00269" "chromosome X open reading frame 62|non-protein coding RNA 269" 2007-08-02 2011-08-11 2011-08-11 2014-11-19 100996279 ENSG00000215162 OTTHUMG00000021754 uc004dxj.2 AK090929 NR_103715 Q8N2A0 +HGNC:32526 LINC00271 long intergenic non-protein coding RNA 271 non-coding RNA RNA, long non-coding Approved 6q23.3 06q23.3 "C6orf217|NCRNA00271" "chromosome 6 open reading frame 217|non-protein coding RNA 271" 2006-02-20 2011-08-11 2011-08-11 2012-10-12 100131814 ENSG00000231028 OTTHUMG00000015632 uc063rrh.1 NR_026805 P0C7V0 +HGNC:26898 LINC00272 long intergenic non-protein coding RNA 272 non-coding RNA RNA, long non-coding Approved 1q25.3 01q25.3 RP1-223H12.3 "C1orf120|NCRNA00272" "chromosome 1 open reading frame 120|non-protein coding RNA 272" 2005-06-21 2011-08-11 2011-08-11 2014-11-18 388719 ENSG00000203729 OTTHUMG00000037402 uc009wxv.2 AF508909 NM_001010899 12801632 +HGNC:38595 LINC00273 long intergenic non-protein coding RNA 273 non-coding RNA RNA, long non-coding Approved 16p11.2 16p11.2 "TOP|NCRNA00273-1" non-protein coding RNA 273-1 NCRNA00273 non-protein coding RNA 273 2010-06-28 2011-08-11 2011-08-11 2014-09-30 649159 ENSG00000256642 OTTHUMG00000176379 uc021thl.2 AY587847 NR_038368 LINC00273 +HGNC:38548 LINC00273-2P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-05 +HGNC:38663 LINC00276 long intergenic non-protein coding RNA 276 non-coding RNA RNA, long non-coding Approved 2p24.3 02p24.3 NCRNA00276 non-protein coding RNA 276 2010-07-07 2011-08-11 2011-08-11 2014-11-18 100499171 ENSG00000230448 OTTHUMG00000151716 uc061gue.1 BC035112 NR_103814 +HGNC:38712 LINC00278 long intergenic non-protein coding RNA 278 non-coding RNA RNA, long non-coding Approved Yp11.31 Yp11.31 NCRNA00278 non-protein coding RNA 278 2010-07-28 2011-08-11 2011-08-11 2012-10-12 100873962 ENSG00000231535 OTTHUMG00000036157 uc031tkv.2 NR_046502 +HGNC:38724 LINC00279 long intergenic non-protein coding RNA 279 non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00279 non-protein coding RNA 279 2010-07-28 2011-08-11 2011-08-11 2012-10-12 100873963 ENSG00000232348 OTTHUMG00000041258 uc065cqk.1 NR_138045 +HGNC:38803 LINC00280 long intergenic non-protein coding RNA 280 non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00280 non-protein coding RNA 280 2010-08-05 2011-08-11 2011-08-11 2012-10-12 100873964 ENSG00000229643 OTTHUMG00000040955 uc033fec.1 NR_046505 +HGNC:26737 LINC00282 long intergenic non-protein coding RNA 282 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 FLJ37307 NCRNA00282 non-protein coding RNA 282 2010-08-05 2011-08-10 2011-08-10 2014-11-18 283521 uc001vft.2 AK094626 NR_027047 +HGNC:38809 LINC00283 long intergenic non-protein coding RNA 283 non-coding RNA RNA, long non-coding Approved 13q33.1 13q33.1 NCRNA00283 non-protein coding RNA 283 2010-08-05 2011-08-10 2011-08-10 2012-10-12 100874057 ENSG00000231633 OTTHUMG00000017311 uc058ycg.1 +HGNC:26981 LINC00284 long intergenic non-protein coding RNA 284 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 NCRNA00284 non-protein coding RNA 284 2010-08-05 2011-08-10 2011-08-10 2014-11-18 121838 ENSG00000233725 OTTHUMG00000016827 uc058wsb.1 AK001938 NR_026955 +HGNC:38515 LINC00290 long intergenic non-protein coding RNA 290 non-coding RNA RNA, long non-coding Approved 4q34.3 04q34.3 NCRNA00290 non-protein coding RNA 290 2010-09-13 2011-08-11 2011-08-11 2014-11-19 728081 ENSG00000248197 OTTHUMG00000160706 uc003iuz.4 AF088005 NR_033918 +HGNC:39078 LINC00293 long intergenic non-protein coding RNA 293 non-coding RNA RNA, long non-coding Approved 8q11.1 08q11.1 BEYLA NCRNA00293 non-protein coding RNA 293 2010-10-05 2011-08-11 2011-08-11 2014-11-18 497634 ENSG00000253314 OTTHUMG00000164130 uc010lxr.2 AK097475 NR_027012 609543 +HGNC:27456 LINC00294 long intergenic non-protein coding RNA 294 non-coding RNA RNA, long non-coding Approved 11p13 11p13 NCRNA00294 non-protein coding RNA 294 2010-10-05 2011-08-11 2011-08-11 2012-10-12 283267 ENSG00000280798 OTTHUMG00000189548 uc001mug.7 BC046921 NR_015451 612296 +HGNC:39210 LINC00297 long intergenic non-protein coding RNA 297 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 NCRNA00297 non-protein coding RNA 297 2010-11-23 2011-08-10 2011-08-10 2012-10-12 100874059 ENSG00000224329 OTTHUMG00000147351 uc031qkw.1 NR_046510 +HGNC:49257 LINC00298 long intergenic non-protein coding RNA 298 non-coding RNA RNA, long non-coding Approved 2p25.1 02p25.1 2013-10-14 2013-10-14 339788 ENSG00000235665 OTTHUMG00000151595 NR_015405 +HGNC:27940 LINC00299 long intergenic non-protein coding RNA 299 non-coding RNA RNA, long non-coding Approved 2p25.1 02p25.1 FLJ45673 "C2orf46|NCRNA00299" "chromosome 2 open reading frame 46|non-protein coding RNA 299" 2006-08-24 2011-08-10 2011-08-10 2014-11-18 339789 ENSG00000236790 OTTHUMG00000112455 uc061glc.1 AK127578 NR_034135 Q6ZSB3 12477932 +HGNC:28603 LINC00301 long intergenic non-protein coding RNA 301 non-coding RNA RNA, long non-coding Approved 11q12.2 11q12.2 MGC39681 "C11orf64|NCRNA00301" "chromosome 11 open reading frame 64|non-protein coding RNA 301" 2006-03-10 2011-08-10 2011-08-10 2014-11-19 283197 ENSG00000181995 OTTHUMG00000141269 uc001npu.4 AK058123 NR_026946 Q8NCQ3 12477932 +HGNC:31825 LINC00302 long intergenic non-protein coding RNA 302 non-coding RNA RNA, long non-coding Approved 1q21.3 01q21.3 XP33 "C1orf46|NCRNA00302" "chromosome 1 open reading frame 46|non-protein coding RNA 302" 2004-09-16 2011-08-10 2011-08-10 2014-11-19 388699 ENSG00000176075 OTTHUMG00000012386 uc057laf.1 AF005082 XR_918273 9344646 +HGNC:26865 LINC00303 long intergenic non-protein coding RNA 303 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 FLJ40343 "C1orf157|NCRNA00303" "chromosome 1 open reading frame 157|non-protein coding RNA 303" 2005-07-15 2011-08-10 2011-08-10 2014-11-18 284573 ENSG00000176754 OTTHUMG00000036054 uc010pqo.2 AK097662 NR_027902 Q3SY05 +HGNC:26713 LINC00304 long intergenic non-protein coding RNA 304 non-coding RNA RNA, long non-coding Approved 16q24.3 16q24.3 FLJ36701 "C16orf81|NCRNA00304" "chromosome 16 open reading frame 81|non-protein coding RNA 304" 2006-08-22 2011-08-10 2011-08-10 2014-11-19 283860 ENSG00000180422 OTTHUMG00000175524 uc002fms.3 AK094020 NR_024347 Q8N9R0 +HGNC:28597 LINC00305 long intergenic non-protein coding RNA 305 non-coding RNA RNA, long non-coding Approved 18q22.1 18q22.1 "MGC39571|HsT1235" "C18orf20|NCRNA00305" "chromosome 18 open reading frame 20|non-protein coding RNA 305" 2004-05-05 2011-08-10 2011-08-10 2014-11-19 221241 ENSG00000179676 OTTHUMG00000060637 uc002ljw.6 BC029565 NM_152728 Q7Z4B0 12477932 +HGNC:16727 LINC00307 long intergenic non-protein coding RNA 307 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 D21S2091E NCRNA00307 non-protein coding RNA 307 2011-04-14 2011-08-10 2011-08-10 2014-11-18 266919 ENSG00000227342 OTTHUMG00000081871 uc021wif.1 AY063455 NR_038855 12036297 +HGNC:16023 LINC00308 long intergenic non-protein coding RNA 308 non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 PRED16 "C21orf74|NCRNA00308" "chromosome 21 open reading frame 74|non-protein coding RNA 308" 2002-11-26 2011-08-10 2011-08-10 2014-11-18 54143 ENSG00000184856 OTTHUMG00000078244 uc021whu.1 AY077696 NR_038400 Q8TCZ7 12036298 +HGNC:25279 LINC00309 long intergenic non-protein coding RNA 309 non-coding RNA RNA, long non-coding Approved 2p14 02p14 NCRNA00309 non-protein coding RNA 309 2011-04-14 2011-08-10 2011-08-10 2014-11-18 150992 ENSG00000230923 OTTHUMG00000152633 uc021vio.2 NR_033837 +HGNC:16414 LINC00310 long intergenic non-protein coding RNA 310 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 "C21orf82|NCRNA00310" "chromosome 21 open reading frame 82|non-protein coding RNA 310" 2001-08-24 2011-08-10 2011-08-10 2014-11-19 114036 ENSG00000227456 OTTHUMG00000086190 uc002yts.3 AF426258 NR_027266 P59036 12036297 +HGNC:28312 LINC00311 long intergenic non-protein coding RNA 311 non-coding RNA RNA, long non-coding Approved 16q24.1 16q24.1 MGC22001 "TMEM148|NCRNA00311" "transmembrane protein 148|non-protein coding RNA 311" 2006-04-04 2011-08-10 2011-08-10 2014-11-18 197196 ENSG00000179219 OTTHUMG00000137643 uc059xyw.1 BC030801 XR_017879 Q8N616 12477932 +HGNC:6662 LINC00312 long intergenic non-protein coding RNA 312 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 "NAG7|NAG-7|ERR10|ERR-10|LMCD1DN" "nasopharyngeal carcinoma candidate 7|estrogen receptor repressor 10|LMCD1 downstream neighbor" "LOH3CR2A|NCRNA00312" "loss of heterozygosity, 3, chromosomal region 2, gene A|non-protein coding RNA 312" Long non-coding RNAs 788 1999-12-22 2011-08-11 2011-08-11 2015-01-29 29931 ENSG00000237697 OTTHUMG00000154967 AF086709 NR_024065 Q9Y6C7 "12452030|12918109|24168098|23529758" 610485 +HGNC:16416 LINC00313 long intergenic non-protein coding RNA 313 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "C21orf84|NCRNA00313" "chromosome 21 open reading frame 84|non-protein coding RNA 313" 2001-08-24 2011-08-10 2011-08-10 2015-07-31 114038 ENSG00000185186 OTTHUMG00000086867 uc002zdh.1 AF426261 NR_026863 P59037 "12036297|26178480" +HGNC:16622 LINC00314 long intergenic non-protein coding RNA 314 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 "C21orf94|NCRNA00314" "chromosome 21 open reading frame 94|non-protein coding RNA 314" 2002-07-05 2011-08-10 2011-08-10 2014-11-18 246705 ENSG00000178457 OTTHUMG00000074158 uc002ymj.4 AF427489 NR_027246 12036297 +HGNC:16621 LINC00315 long intergenic non-protein coding RNA 315 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "C21orf93|NCRNA00315" "chromosome 21 open reading frame 93|non-protein coding RNA 315" 2002-11-26 2011-08-10 2011-08-10 2014-11-18 246704 ENSG00000184274 OTTHUMG00000090409 uc062awa.1 AF427488 P59091 12036297 +HGNC:19723 LINC00316 long intergenic non-protein coding RNA 316 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 PRED59 "C21orf111|NCRNA00316" "chromosome 21 open reading frame 111|non-protein coding RNA 316" 2003-10-02 2011-08-10 2011-08-10 2014-11-19 388830 ENSG00000237664 OTTHUMG00000090404 uc032qcd.1 BG221750 NR_103811 +HGNC:23126 LINC00317 long intergenic non-protein coding RNA 317 non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 PRED89 "C21orf117|NCRNA00317" "chromosome 21 open reading frame 117|non-protein coding RNA 317" 2003-10-01 2011-08-10 2011-08-10 2014-11-19 378828 ENSG00000238265 OTTHUMG00000078123 uc021wht.1 BC009878 NR_038872 +HGNC:19730 LINC00319 long intergenic non-protein coding RNA 319 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "PRED49|FLJ38036" "C21orf125|NCRNA00319" "chromosome 21 open reading frame 125|non-protein coding RNA 319" 2003-10-02 2011-08-11 2011-08-11 2014-11-19 284836 ENSG00000188660 OTTHUMG00000086866 uc062aoa.1 AK095355 NR_026960 +HGNC:19690 LINC00320 long intergenic non-protein coding RNA 320 non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 "PRED14|FLJ37539" "C21orf131|NCRNA00320" "chromosome 21 open reading frame 131|non-protein coding RNA 320" 2003-12-15 2011-08-10 2011-08-10 2014-11-19 387486 ENSG00000224924 OTTHUMG00000078063 uc002ykz.6 AK094858 NR_024090 +HGNC:33698 LINC00322 long intergenic non-protein coding RNA 322 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 FLJ16545 "C21orf136|NCRNA00322" "chromosome 21 open reading frame 136|non-protein coding RNA 322" 2007-11-14 2011-08-10 2011-08-10 2014-11-19 100126693 ENSG00000237864 OTTHUMG00000086864 uc032qak.2 AK131425 NR_103713 Q6ZN03 17081983 +HGNC:19720 LINC00323 long intergenic non-protein coding RNA 323 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 "PRED42|FLJ37173" "C21orf130|NCRNA00323" "chromosome 21 open reading frame 130|non-protein coding RNA 323" 2003-12-15 2011-08-11 2011-08-11 2016-10-05 284835 ENSG00000226496 OTTHUMG00000086741 uc002yyv.2 AK094492 NR_024100 +HGNC:26628 LINC00324 long intergenic non-protein coding RNA 324 non-coding RNA RNA, long non-coding Approved 17p13.1 17p13.1 "FLJ34790|MGC104931" "C17orf44|NCRNA00324" "chromosome 17 open reading frame 44|non-protein coding RNA 324" 2005-11-14 2011-08-10 2011-08-10 2014-11-19 284029 ENSG00000178977 OTTHUMG00000132866 uc002gkp.5 AK092109 NR_026951 +HGNC:41926 LINC00326 long intergenic non-protein coding RNA 326 non-coding RNA RNA, long non-coding Approved 6q23.2 06q23.2 NCRNA00326 non-protein coding RNA 326 2011-05-19 2011-08-10 2011-08-10 2012-10-12 285735 ENSG00000231023 OTTHUMG00000015597 uc003qdz.3 NR_026969 +HGNC:42009 LINC00327 long intergenic non-protein coding RNA 327 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 NCRNA00327 non-protein coding RNA 327 2011-05-31 2011-08-10 2011-08-10 2014-11-18 100506697 ENSG00000232977 OTTHUMG00000016566 uc001uos.3 NR_038995 +HGNC:42028 LINC00328 long intergenic non-protein coding RNA 328 non-coding RNA RNA, long non-coding Approved 21p11.2 21p11.2 NCRNA00328-1 non-protein coding RNA 328-1 "NCRNA00328A|NCRNA00328" "non-protein coding RNA 328A|non-protein coding RNA 328" 2011-06-01 2011-08-10 2011-08-10 2012-10-12 51152 AF172850 +HGNC:42027 LINC00328-2P long intergenic non-protein coding RNA 328-2, pseudogene pseudogene pseudogene Approved 13q11 13q11 "NCRNA00328B|NCRNA00328-2P" "non-protein coding RNA 328B|non-protein coding RNA 328-2, pseudogene" 2011-06-01 2011-08-10 2011-08-10 2011-08-10 100874404 ENSG00000225016 OTTHUMG00000016468 NG_032649 +HGNC:42038 LINC00329 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-11-21 +HGNC:42047 LINC00330 long intergenic non-protein coding RNA 330 non-coding RNA RNA, long non-coding Approved 13q14.12 13q14.12 NCRNA00330 non-protein coding RNA 330 2011-06-01 2011-08-10 2011-08-10 2014-11-19 144817 ENSG00000235097 OTTHUMG00000016840 uc021rjc.2 AK056732 NR_038433 +HGNC:42048 LINC00331 long intergenic non-protein coding RNA 331 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 NCRNA00331 non-protein coding RNA 331 2011-06-01 2011-08-10 2011-08-10 2014-11-18 100874126 ENSG00000225427 OTTHUMG00000017124 uc058xqt.1 NR_046869 +HGNC:42049 LINC00332 long intergenic non-protein coding RNA 332 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 NCRNA00332 non-protein coding RNA 332 2011-06-01 2011-08-10 2011-08-10 2014-11-19 100874127 ENSG00000230710 OTTHUMG00000016770 uc031qlg.2 NR_046870 +HGNC:42050 LINC00333 long intergenic non-protein coding RNA 333 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 NCRNA00333 non-protein coding RNA 333 2011-06-01 2011-08-10 2011-08-10 2014-11-18 100874128 ENSG00000233349 OTTHUMG00000017154 uc058xrp.1 NR_046871 +HGNC:16425 LINC00334 long intergenic non-protein coding RNA 334 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "C21orf89|NCRNA00334" "chromosome 21 open reading frame 89|non-protein coding RNA 334" 2001-08-24 2011-08-10 2011-08-10 2014-11-18 114042 ENSG00000182586 OTTHUMG00000084875 uc002zgz.1 AF426268 NR_135279 12036297 +HGNC:33813 LINC00336 long intergenic non-protein coding RNA 336 non-coding RNA RNA, long non-coding Approved 6p21.31 06p21.31 FLJ43752 "C6orf227|NCRNA00336" "chromosome 6 open reading frame 227|non-protein coding RNA 336" 2009-04-02 2011-08-10 2011-08-10 2012-10-12 401253 ENSG00000197251 OTTHUMG00000159733 uc003oew.2 AK125740 NR_027908 Q6ZUF6 +HGNC:28620 LINC00337 long intergenic non-protein coding RNA 337 non-coding RNA RNA, long non-coding Approved 1p36.31 01p36.31 MGC40168 "C1orf211|NCRNA00337" "chromosome 1 open reading frame 211|non-protein coding RNA 337" 2006-04-03 2011-08-10 2011-08-10 2014-11-18 148645 ENSG00000225077 OTTHUMG00000001255 uc031tnm.2 BC030279 NR_103534 Q8N6G1 12477932 +HGNC:25011 LINC00339 long intergenic non-protein coding RNA 339 non-coding RNA RNA, long non-coding Approved 1p36.12 01p36.12 HSPC157 NCRNA00339 non-protein coding RNA 339 2011-06-10 2011-08-10 2011-08-10 2014-11-18 29092 ENSG00000218510 OTTHUMG00000002757 uc284mnl.1 NR_109761 11042152 +HGNC:20353 LINC00341 long intergenic non-protein coding RNA 341 non-coding RNA RNA, long non-coding Approved 14q32.13 14q32.13 "C14orf139|NCRNA00341" "chromosome 14 open reading frame 139|non-protein coding RNA 341" 2003-01-28 2011-08-10 2011-08-10 2015-01-29 79686 OTTHUMG00000028884 AK024929 NR_026779 Q9H761 +HGNC:42470 LINC00342 long intergenic non-protein coding RNA 342 non-coding RNA RNA, long non-coding Approved 2q11.1 02q11.1 NCRNA00342 non-protein coding RNA 342 2011-07-29 2011-08-10 2011-08-10 2012-10-12 150759 ENSG00000232931 OTTHUMG00000155186 uc002sux.3 NR_103734 PGOHUM00000240212 +HGNC:42500 LINC00343 long intergenic non-protein coding RNA 343 non-coding RNA RNA, long non-coding Approved 13q33.2 13q33.2 "NCRNA00343|LINC00344|NCRNA00344" "non-protein coding RNA 343|long intergenic non-protein coding RNA 344|non-protein coding RNA 344" 2011-08-02 2011-08-10 2011-08-10 2014-11-19 144920 ENSG00000226620 OTTHUMG00000017317 uc058ydt.1 NR_046391 +HGNC:42503 LINC00345 long intergenic non-protein coding RNA 345 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 2011-08-10 2014-11-18 100874134 ENSG00000235660 OTTHUMG00000016974 uc058xgz.1 +HGNC:27492 LINC00346 long intergenic non-protein coding RNA 346 non-coding RNA RNA, long non-coding Approved 13q34 13q34 "C13orf29|NCRNA00346" "chromosome 13 open reading frame 29|non-protein coding RNA 346" 2006-08-04 2011-08-10 2011-08-10 2014-06-17 283487 ENSG00000255874 OTTHUMG00000187398 uc001vrk.3 NR_027701 Q8IVM7 LINC00346 +HGNC:27890 LINC00347 long intergenic non-protein coding RNA 347 non-coding RNA RNA, long non-coding Approved 13q22.1 13q22.1 2011-08-11 2011-08-11 2014-11-18 338864 ENSG00000236678 OTTHUMG00000017082 uc058xlx.1 NR_034024 12477932 +HGNC:42658 LINC00348 long intergenic non-protein coding RNA 348 non-coding RNA RNA, long non-coding Approved 13q21.33 13q21.33 2011-08-11 2011-08-11 2014-11-19 100885781 ENSG00000226846 OTTHUMG00000017059 uc031qmd.1 NR_047699 +HGNC:42667 LINC00349 long intergenic non-protein coding RNA 349 non-coding RNA RNA, long non-coding Approved 13q11 13q11 2011-08-15 2014-11-18 100874135 ENSG00000231238 OTTHUMG00000016451 uc058vrz.1 +HGNC:42668 LINC00350 long intergenic non-protein coding RNA 350 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2011-08-15 2014-11-18 100874136 ENSG00000225316 OTTHUMG00000016497 uc058vst.1 NR_046988 +HGNC:42669 LINC00351 long intergenic non-protein coding RNA 351 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 2011-08-15 2014-11-18 100874137 ENSG00000226317 OTTHUMG00000017156 uc031qmo.2 NR_046989 +HGNC:42670 LINC00352 long intergenic non-protein coding RNA 352 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 2011-08-15 2014-11-18 100874138 ENSG00000227893 OTTHUMG00000016567 uc058vxa.1 +HGNC:42671 LINC00353 long intergenic non-protein coding RNA 353 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 2011-08-15 2014-11-18 100874139 ENSG00000236176 OTTHUMG00000017179 uc058xsl.1 NR_046991 +HGNC:42672 LINC00354 long intergenic non-protein coding RNA 354 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2011-08-15 2014-11-19 101928616 ENSG00000226903 OTTHUMG00000017361 uc058yis.1 NR_046992 +HGNC:27061 LINC00355 long intergenic non-protein coding RNA 355 non-coding RNA RNA, long non-coding Approved 13q21.31 13q21.31 2011-08-15 2014-11-18 144766 ENSG00000227674 OTTHUMG00000017028 uc001vii.1 +HGNC:42675 LINC00356 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42677 LINC00357 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42678 LINC00358 long intergenic non-protein coding RNA 358 non-coding RNA RNA, long non-coding Approved 13q21.31 13q21.31 2011-08-15 2014-11-19 100874143 ENSG00000229578 OTTHUMG00000017014 uc032ahy.1 NR_046995 +HGNC:42679 LINC00359 long intergenic non-protein coding RNA 359 non-coding RNA RNA, long non-coding Approved 13q32.1 13q32.1 2011-08-15 2014-11-19 100887754 ENSG00000243300 OTTHUMG00000185759 uc031qmy.2 NR_051966 +HGNC:42681 LINC00361 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42682 LINC00362 long intergenic non-protein coding RNA 362 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 2011-08-15 2014-11-19 100874144 ENSG00000229483 OTTHUMG00000016559 uc058vws.1 +HGNC:42684 LINC00363 long intergenic non-protein coding RNA 363 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 TCONS_00021586 2013-08-08 2014-11-18 104326053 ENSG00000232849 OTTHUMG00000017201 AA885151 NR_126360 +HGNC:42686 LINC00364 long intergenic non-protein coding RNA 364 non-coding RNA RNA, long non-coding Approved 13q21.32 13q21.32 2011-08-16 2014-11-19 100874145 ENSG00000230040 OTTHUMG00000017041 uc058xjx.1 NR_130792 +HGNC:42687 LINC00365 long intergenic non-protein coding RNA 365 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2011-08-16 2014-11-18 100874146 ENSG00000224511 OTTHUMG00000016663 uc058wdd.1 NR_046998 +HGNC:42688 LINC00366 long intergenic non-protein coding RNA 366 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 2011-08-16 2014-11-18 100874147 ENSG00000229437 OTTHUMG00000016758 uc058wnj.1 NR_046999 +HGNC:42689 LINC00367 long intergenic non-protein coding RNA 367 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 TCONS_l2_00007488 2013-08-08 2015-01-29 101930748 OTTHUMG00000016526 BG723634 NR_104058 +HGNC:42690 LINC00368 long intergenic non-protein coding RNA 368 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2013-08-19 2014-11-18 101927802 ENSG00000225870 OTTHUMG00000017352 BG720241 NR_120415 +HGNC:42692 LINC00370 long intergenic non-protein coding RNA 370 non-coding RNA RNA, long non-coding Approved 13q33.3 13q33.3 2013-09-16 2014-11-19 105370357 ENSG00000223617 OTTHUMG00000017334 BF695150 +HGNC:42693 LINC00371 long intergenic non-protein coding RNA 371 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 2011-08-16 2014-11-18 647166 ENSG00000226792 OTTHUMG00000153575 uc031qlr.2 NR_102432 +HGNC:42694 LINC00372 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42698 LINC00374 long intergenic non-protein coding RNA 374 non-coding RNA RNA, long non-coding Approved 13q21.1 13q21.1 2013-08-08 2014-11-19 106144531 ENSG00000232954 OTTHUMG00000016997 BG190276 NR_132367 +HGNC:42699 LINC00375 long intergenic non-protein coding RNA 375 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 2013-08-08 2014-11-18 104355140 ENSG00000226370 OTTHUMG00000017155 AW510855 NR_126383 +HGNC:42701 LINC00376 long intergenic non-protein coding RNA 376 non-coding RNA RNA, long non-coding Approved 13q21.31 13q21.31 2013-09-16 2014-11-19 104355293 ENSG00000227564 OTTHUMG00000017020 AA759092 NR_126409 +HGNC:42703 LINC00377 long intergenic non-protein coding RNA 377 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 TCONS_00021861 2014-01-13 2014-11-19 103724386 ENSG00000229246 OTTHUMG00000017144 BG185523 NR_125770 +HGNC:42704 LINC00378 long intergenic non-protein coding RNA 378 non-coding RNA RNA, long non-coding Approved 13q21.2 13q21.2 2011-08-16 2014-11-18 101926930 ENSG00000225249 OTTHUMG00000017008 uc058xiv.1 NR_047003 +HGNC:42705 LINC00379 long intergenic non-protein coding RNA 379 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 2011-08-16 2014-11-18 100874150 ENSG00000229557 OTTHUMG00000017188 uc058xsr.1 NR_047004 +HGNC:42706 LINC00380 long intergenic non-protein coding RNA 380 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 TCONS_00021685 2013-08-08 2014-11-18 101930747 ENSG00000234625 OTTHUMG00000017187 AA609658 NR_104057 +HGNC:42708 LINC00381 long intergenic non-protein coding RNA 381 non-coding RNA RNA, long non-coding Approved 13q22.1 13q22.1 2011-08-16 2014-11-18 100874151 ENSG00000226240 OTTHUMG00000017081 uc031qmf.1 NR_047005 +HGNC:42709 LINC00382 long intergenic non-protein coding RNA 382 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 TCONS_00021500 2013-08-08 2014-11-19 101927195 ENSG00000229175 OTTHUMG00000017139 BG717866 NR_120413 +HGNC:42710 LINC00383 long intergenic non-protein coding RNA 383 non-coding RNA RNA, long non-coding Approved 13q21.33 13q21.33 LINC00401 long intergenic non-protein coding RNA 401 2013-08-08 2015-04-02 103689913 ENSG00000237534 OTTHUMG00000017052 "BG527271|BM557184" NR_125752 +HGNC:42711 LINC00384 long intergenic non-protein coding RNA 384 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2013-09-16 2014-11-19 102157400 ENSG00000232117 OTTHUMG00000055982 BX648491 XR_429230 +HGNC:42713 LINC00385 long intergenic non-protein coding RNA 385 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2013-09-16 2014-11-19 105370141 ENSG00000232643 OTTHUMG00000016664 AI203837 XR_941807 +HGNC:42715 LINC00387 long intergenic non-protein coding RNA 387 non-coding RNA RNA, long non-coding Approved 13q11 13q11 2011-08-16 2014-11-18 100874152 ENSG00000231914 OTTHUMG00000016454 uc058vsc.1 +HGNC:42716 LINC00388 long intergenic non-protein coding RNA 388 non-coding RNA RNA, long non-coding Approved 13q11 13q11 2011-08-16 2014-11-19 100874153 ENSG00000229788 OTTHUMG00000016452 uc058vsa.1 +HGNC:42718 LINC00390 long intergenic non-protein coding RNA 390 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 TCONS_00021641 2013-08-08 2014-11-18 105370183 ENSG00000226519 OTTHUMG00000016828 AW779259 NR_132368 +HGNC:42719 LINC00391 long intergenic non-protein coding RNA 391 non-coding RNA RNA, long non-coding Approved 13q32.1 13q32.1 2011-08-16 2014-11-18 100874154 ENSG00000238230 OTTHUMG00000017212 uc058xts.1 +HGNC:42720 LINC00392 long intergenic non-protein coding RNA 392 non-coding RNA RNA, long non-coding Approved 13q22.1 13q22.1 2011-08-16 2014-11-19 100874155 ENSG00000228295 OTTHUMG00000017076 uc058xll.1 NR_047009 +HGNC:42721 LINC00393 long intergenic non-protein coding RNA 393 non-coding RNA RNA, long non-coding Approved 13q22.1 13q22.1 2011-08-16 2014-11-18 100874156 ENSG00000224853 OTTHUMG00000017077 uc058xlj.1 XR_001749747 +HGNC:42723 LINC00395 long intergenic non-protein coding RNA 395 non-coding RNA RNA, long non-coding Approved 13q21.31 13q21.31 2011-08-16 2014-11-19 100874157 ENSG00000231061 OTTHUMG00000017022 uc032aid.1 NR_047011 +HGNC:42724 LINC00396 long intergenic non-protein coding RNA 396 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2013-08-21 2014-11-19 104355146 ENSG00000231428 OTTHUMG00000017341 AA927226 NR_126387 +HGNC:42725 LINC00397 long intergenic non-protein coding RNA 397 non-coding RNA RNA, long non-coding Approved 13q31.2 13q31.2 TCONS_00021582 2013-08-08 2014-11-18 101930749 ENSG00000223404 OTTHUMG00000017169 AI286230 NR_104059 +HGNC:42727 LINC00398 long intergenic non-protein coding RNA 398 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2011-08-16 2014-11-19 100874158 ENSG00000237879 OTTHUMG00000016676 uc031qkx.1 NR_047012 +HGNC:42728 LINC00399 long intergenic non-protein coding RNA 399 non-coding RNA RNA, long non-coding Approved 13q33.3 13q33.3 TCONS_00021596 2013-08-08 2014-11-19 104326054 ENSG00000229792 OTTHUMG00000017337 "BX111569|AI023810" NR_126361 +HGNC:42729 LINC00400 long intergenic non-protein coding RNA 400 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 2011-08-16 2014-11-18 100874159 ENSG00000229928 OTTHUMG00000016815 uc058wrk.1 NR_047013 +HGNC:42732 LINC00402 long intergenic non-protein coding RNA 402 non-coding RNA RNA, long non-coding Approved 13q22.1 13q22.1 2011-08-16 2014-11-18 100507612 ENSG00000235532 OTTHUMG00000017079 uc001vji.2 +HGNC:42733 LINC00403 long intergenic non-protein coding RNA 403 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2011-08-16 2014-11-19 100505996 ENSG00000224243 OTTHUMG00000017363 uc058yix.1 NR_120394 +HGNC:42734 LINC00404 long intergenic non-protein coding RNA 404 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2011-08-16 2014-11-18 100874160 ENSG00000229520 OTTHUMG00000017364 uc058yiw.1 +HGNC:42739 LINC00407 long intergenic non-protein coding RNA 407 non-coding RNA RNA, long non-coding Approved 13q14.12 13q14.12 2013-08-08 2014-11-18 106144541 ENSG00000237585 OTTHUMG00000016839 BG959100 +HGNC:42740 LINC00408 long intergenic non-protein coding RNA 408 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2013-08-08 2016-10-05 100652856 ENSG00000226250 OTTHUMG00000016469 BG722014 NR_104118 +HGNC:42742 LINC00410 long intergenic non-protein coding RNA 410 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 2011-08-18 2014-11-18 144776 ENSG00000231674 OTTHUMG00000017185 uc010tid.1 NR_027039 +HGNC:42744 LINC00411 long intergenic non-protein coding RNA 411 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 2011-08-18 2014-11-19 100874161 ENSG00000229599 OTTHUMG00000017293 uc058ybi.1 NR_047015 +HGNC:42745 LINC00412 long intergenic non-protein coding RNA 412 non-coding RNA RNA, long non-coding Approved 13q12.2 13q12.2 2013-08-08 2014-11-19 102723332 ENSG00000234772 OTTHUMG00000016629 AI051530 NR_120429 +HGNC:42746 LINC00413 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42748 LINC00415 long intergenic non-protein coding RNA 415 non-coding RNA RNA, long non-coding Approved 13q12.13 13q12.13 2011-08-18 2014-11-18 100874163 ENSG00000231983 OTTHUMG00000016610 uc058vzg.1 +HGNC:42751 LINC00417 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42752 LINC00418 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-08-26 +HGNC:42753 LINC00419 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:42754 LINC00420 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:42755 LINC00421 long intergenic non-protein coding RNA 421 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2011-08-18 2014-11-18 100287114 ENSG00000236834 OTTHUMG00000016488 uc021rgw.1 NR_034026 +HGNC:42758 LINC00423 long intergenic non-protein coding RNA 423 non-coding RNA RNA, long non-coding Approved 13q13.1 13q13.1 2011-08-18 2014-11-18 100874167 ENSG00000226968 OTTHUMG00000016703 uc058wha.1 NR_047020 +HGNC:42815 LINC00424 long intergenic non-protein coding RNA 424 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2011-08-23 2014-11-18 100874182 ENSG00000226722 OTTHUMG00000016547 uc058vwh.1 NR_047040 +HGNC:42761 LINC00426 long intergenic non-protein coding RNA 426 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2011-08-18 2014-11-19 100188949 ENSG00000238121 OTTHUMG00000016668 uc001usu.3 NR_024464 +HGNC:42762 LINC00427 long intergenic non-protein coding RNA 427 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2011-08-18 2014-11-19 100507040 ENSG00000236463 OTTHUMG00000016667 uc058wdm.1 +HGNC:42763 LINC00428 long intergenic non-protein coding RNA 428 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 2013-08-19 2014-11-19 104355147 ENSG00000229546 OTTHUMG00000016811 AA206719 NR_126389 +HGNC:42765 LINC00430 long intergenic non-protein coding RNA 430 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 TCONS_00021581 2013-08-08 2014-11-18 106144533 ENSG00000233528 OTTHUMG00000017162 AW661815 NR_132371 +HGNC:42766 LINC00431 long intergenic non-protein coding RNA 431 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2013-08-08 2014-11-19 104355135 ENSG00000225760 OTTHUMG00000017351 BG181389 NR_126378 +HGNC:42768 LINC00433 long intergenic non-protein coding RNA 433 non-coding RNA RNA, long non-coding Approved 13q31.2 13q31.2 2011-08-18 2014-11-19 100874168 ENSG00000229443 OTTHUMG00000017171 uc058xse.1 NR_047021 +HGNC:42769 LINC00434 long intergenic non-protein coding RNA 434 non-coding RNA RNA, long non-coding Approved 13q21.2 13q21.2 2011-08-18 2014-11-19 100874169 ENSG00000227336 OTTHUMG00000017005 uc058xin.1 NR_047022 +HGNC:42772 LINC00437 long intergenic non-protein coding RNA 437 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 TCONS_00021639 2013-08-08 2014-11-18 101929121 ENSG00000236354 OTTHUMG00000016756 BM927018 NR_126377 +HGNC:42775 LINC00438 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:42776 LINC00439 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:42777 LINC00440 long intergenic non-protein coding RNA 440 non-coding RNA RNA, long non-coding Approved 13q31.2 13q31.2 2011-08-18 2014-11-18 100874172 ENSG00000234660 OTTHUMG00000017175 uc058xsj.1 NR_047025 +HGNC:42778 LINC00441 long intergenic non-protein coding RNA 441 non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 ncRNA-RB1 2011-08-18 2015-01-29 100862704 ENSG00000231473 OTTHUMG00000016896 uc001vca.3 NR_046414 25579178 +HGNC:42779 LINC00442 long intergenic non-protein coding RNA 442 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2011-08-18 2014-11-18 348021 ENSG00000232685 OTTHUMG00000016475 uc001uma.2 NR_026852 +HGNC:42780 LINC00443 long intergenic non-protein coding RNA 443 non-coding RNA RNA, long non-coding Approved 13q33.3 13q33.3 2011-08-18 2014-11-18 100874173 ENSG00000230156 OTTHUMG00000017323 uc031qnf.2 NR_047026 +HGNC:42781 LINC00444 long intergenic non-protein coding RNA 444 non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 2011-08-18 2014-11-19 100874174 ENSG00000234689 OTTHUMG00000016886 uc058wxn.1 +HGNC:42782 LINC00445 long intergenic non-protein coding RNA 445 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 2011-08-18 2014-11-19 100507114 ENSG00000236036 OTTHUMG00000016726 uc058wkh.1 NR_132115 +HGNC:42783 LINC00446 long intergenic non-protein coding RNA 446 non-coding RNA RNA, long non-coding Approved 13q22.3 13q22.3 2011-08-18 2014-11-18 100874175 ENSG00000229249 OTTHUMG00000017115 uc058xqb.1 NR_047028 +HGNC:42785 LINC00448 long intergenic non-protein coding RNA 448 non-coding RNA RNA, long non-coding Approved 13q21.31 13q21.31 2011-08-18 2014-11-18 100874176 ENSG00000228669 OTTHUMG00000017019 uc058xjh.1 NR_120403 +HGNC:42786 LINC00449 long intergenic non-protein coding RNA 449 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 2011-08-18 2014-11-19 106478991 ENSG00000203441 OTTHUMG00000017270 uc058xzp.1 NR_133664 +HGNC:42800 LINC00452 long intergenic non-protein coding RNA 452 other unknown Approved 13q34 13q34 LINC00453 long intergenic non-protein coding RNA 453 2011-08-22 2014-11-18 643365 ENSG00000229373 OTTHUMG00000017394 uc031qnp.2 XR_941421 +HGNC:42802 LINC00454 long intergenic non-protein coding RNA 454 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2011-08-22 2014-11-18 100874178 ENSG00000226921 OTTHUMG00000017392 uc058yop.1 XR_941428 +HGNC:42804 LINC00456 long intergenic non-protein coding RNA 456 non-coding RNA RNA, long non-coding Approved 13q32.1 13q32.1 2013-08-19 2015-07-09 103625683 ENSG00000233124 OTTHUMG00000017237 BG623605 NR_125725 +HGNC:42805 LINC00457 long intergenic non-protein coding RNA 457 non-coding RNA RNA, long non-coding Approved 13q13.2 13q13.2 2011-08-22 2014-11-18 100874179 ENSG00000225179 OTTHUMG00000016718 uc058wjw.1 NR_047036 +HGNC:42807 LINC00458 long intergenic non-protein coding RNA 458 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 LncRNA-ES3 2011-08-22 2014-11-18 100507428 ENSG00000234787 OTTHUMG00000016984 uc058xho.1 BC026300 NR_108062 +HGNC:42808 LINC00459 long intergenic non-protein coding RNA 459 non-coding RNA RNA, long non-coding Approved 13q21.31 13q21.31 2011-08-22 2014-11-19 100874180 ENSG00000229307 OTTHUMG00000017015 uc058xjg.1 +HGNC:42809 LINC00460 long intergenic non-protein coding RNA 460 non-coding RNA RNA, long non-coding Approved 13q33.2 13q33.2 2011-08-22 2016-10-05 728192 ENSG00000233532 OTTHUMG00000017319 uc058yea.1 NR_034119 +HGNC:42810 LINC00461 long intergenic non-protein coding RNA 461 non-coding RNA RNA, long non-coding Approved 5q14.3 05q14.3 "EyeLinc1|Visc-1a|Visc-1b|Visc-2|LOC645323" visual cortex expressed 2011-08-18 2016-04-08 645323 ENSG00000245526 OTTHUMG00000162632 uc063ffe.1 NR_024384 "23562822|25209608|25392693" MGI:2443574 616611 +HGNC:42811 LINC00462 long intergenic non-protein coding RNA 462 non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 2011-08-22 2014-11-19 100129597 ENSG00000233610 OTTHUMG00000016905 uc058wyx.1 NR_051983 +HGNC:42813 LINC00463 long intergenic non-protein coding RNA 463 non-coding RNA RNA, long non-coding Approved 13q12.13 13q12.13 TCONS_l2_00007499 AMER2-AS1 AMER2 antisense RNA 1 (head to head) 2013-08-08 2014-06-17 2014-06-17 2014-11-18 101928922 ENSG00000234056 OTTHUMG00000016604 BM666193 NR_120428 +HGNC:27294 LINC00466 long intergenic non-protein coding RNA 466 non-coding RNA RNA, long non-coding Approved 1p31.3 01p31.3 2011-08-25 2014-11-18 199899 ENSG00000224209 OTTHUMG00000009143 uc284mqk.1 NR_038252 12477932 +HGNC:28227 LINC00467 long intergenic non-protein coding RNA 467 non-coding RNA RNA, long non-coding Approved 1q32.3 01q32.3 MGC14801 C1orf97 chromosome 1 open reading frame 97 2005-05-31 2013-12-05 2013-12-05 2014-11-19 84791 ENSG00000153363 OTTHUMG00000036998 uc001hil.5 BC005997 NR_026761 Q9BRT7 24586304 +HGNC:26863 LINC00469 long intergenic non-protein coding RNA 469 non-coding RNA RNA, long non-coding Approved 17q25.1 17q25.1 FLJ40319 C17orf54 chromosome 17 open reading frame 54 2005-12-15 2011-08-31 2011-08-31 2012-10-12 283982 ENSG00000177338 OTTHUMG00000167833 uc060jmv.1 AK097638 NM_182564 Q8N7U9 +HGNC:1225 LINC00470 long intergenic non-protein coding RNA 470 non-coding RNA RNA, long non-coding Approved 18p11.32 18p11.32 C18orf2 chromosome 18 open reading frame 2 2000-08-11 2011-08-31 2011-08-31 2012-10-12 56651 ENSG00000132204 OTTHUMG00000178327 uc002kld.1 AF295730 NR_023925 Q9BZP3 11173868 LINC00470 +HGNC:28668 LINC00471 long intergenic non-protein coding RNA 471 non-coding RNA RNA, long non-coding Approved 2q37.1 02q37.1 MGC43122 C2orf52 chromosome 2 open reading frame 52 2006-11-03 2011-08-31 2011-08-31 2014-11-18 151477 ENSG00000181798 OTTHUMG00000133227 uc002vrx.2 BC033054 NM_173513 Q8N535 12477932 +HGNC:21380 LINC00472 long intergenic non-protein coding RNA 472 non-coding RNA RNA, long non-coding Approved 6q13 06q13 "dJ288M22.3|FLJ13189" C6orf155 chromosome 6 open reading frame 155 2003-06-11 2011-08-31 2011-08-31 2015-04-22 79940 ENSG00000233237 OTTHUMG00000015006 uc063pmi.1 NR_121612 Q9H8W2 25865225 +HGNC:21160 LINC00473 long intergenic non-protein coding RNA 473 non-coding RNA RNA, long non-coding Approved 6q27 06q27 bA142J11.1 C6orf176 chromosome 6 open reading frame 176 2003-11-25 2011-08-31 2011-08-31 2014-11-19 90632 ENSG00000223414 OTTHUMG00000015990 uc063sul.1 BC008632 NR_026860 A8K010 22108211 +HGNC:23367 LINC00474 long intergenic non-protein coding RNA 474 non-coding RNA RNA, long non-coding Approved 9q33.1 09q33.1 EST-YD1 C9orf27 chromosome 9 open reading frame 27 2003-11-14 2011-08-31 2011-08-31 2016-10-05 58483 ENSG00000204148 OTTHUMG00000020551 uc004bjm.4 AB021923 NM_021208 Q9P2X8 +HGNC:23569 LINC00475 long intergenic non-protein coding RNA 475 non-coding RNA RNA, long non-coding Approved 9q22.31 09q22.31 C9orf44 chromosome 9 open reading frame 44 2003-11-25 2011-08-31 2011-08-31 2012-10-12 158314 ENSG00000225511 OTTHUMG00000020216 uc004arp.2 AK023662 NR_027341 +HGNC:27858 LINC00476 long intergenic non-protein coding RNA 476 non-coding RNA RNA, long non-coding Approved 9q22.32 09q22.32 C9orf130 chromosome 9 open reading frame 130 2004-04-16 2013-12-05 2013-12-05 2016-10-05 100128782 ENSG00000175611 OTTHUMG00000020286 uc064unj.1 AK092137 NR_023389 Q8WZB0 +HGNC:26557 LINC00477 long intergenic non-protein coding RNA 477 non-coding RNA RNA, long non-coding Approved 12p12.1 12p12.1 "FLJ32894|FAM191B" family with sequence similarity 191, member B C12orf67 chromosome 12 open reading frame 67 2008-07-11 2011-08-31 2011-08-31 2014-11-18 144360 ENSG00000197503 OTTHUMG00000159485 uc001rgb.1 AK057456 NM_144667 Q96M19 14702039 +HGNC:19727 LINC00479 long intergenic non-protein coding RNA 479 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "PRED76|FLJ32835" C21orf129 chromosome 21 open reading frame 129 2003-12-15 2011-08-31 2011-08-31 2014-11-19 150135 ENSG00000236384 OTTHUMG00000086773 uc011aet.1 AK057397 NR_027272 Q96M42 +HGNC:39817 LINC00481 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-02-18 +HGNC:26816 LINC00482 long intergenic non-protein coding RNA 482 non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 FLJ39421 C17orf55 chromosome 17 open reading frame 55 2005-12-15 2011-09-01 2011-09-01 2012-10-12 284185 ENSG00000185168 OTTHUMG00000177904 uc060lim.1 AK096740 NM_178519 Q8N8I6 +HGNC:26080 LINC00483 long intergenic non-protein coding RNA 483 non-coding RNA RNA, long non-coding Approved 17q21.33 17q21.33 FLJ20694 C17orf73 chromosome 17 open reading frame 73 2006-01-04 2013-12-05 2013-12-05 2014-11-18 55018 ENSG00000167117 OTTHUMG00000132429 uc060hmz.1 AK000701 NR_073199 Q53H64 +HGNC:27862 LINC00484 long intergenic non-protein coding RNA 484 non-coding RNA RNA, long non-coding Approved 9q22.2 09q22.2 C9orf73 chromosome 9 open reading frame 73 2004-01-06 2011-09-06 2011-09-06 2016-10-05 100129347 ENSG00000235641 OTTHUMG00000020203 uc004are.2 AK095132 NR_135306 +HGNC:27476 LINC00485 long intergenic non-protein coding RNA 485 non-coding RNA RNA, long non-coding Approved 12q23.2 12q23.2 2011-09-08 2012-10-12 283432 ENSG00000258169 OTTHUMG00000169965 uc021rct.2 BC037211 NR_033855 +HGNC:42946 LINC00486 long intergenic non-protein coding RNA 486 non-coding RNA RNA, long non-coding Approved 2p22.3 02p22.3 2011-09-08 2012-10-12 285045 ENSG00000230876 OTTHUMG00000152136 uc061hyt.1 NR_027099 +HGNC:42947 LINC00487 long intergenic non-protein coding RNA 487 non-coding RNA RNA, long non-coding Approved 2p25.2 02p25.2 FLJ42418 2011-09-08 2012-10-12 400941 ENSG00000205837 OTTHUMG00000151630 uc002qym.2 NR_038369 +HGNC:32675 LINC00488 long intergenic non-protein coding RNA 488 non-coding RNA RNA, long non-coding Approved 3q13.13 03q13.13 FLJ41232 C3orf66 chromosome 3 open reading frame 66 2006-03-30 2011-09-14 2011-09-14 2012-10-12 677779 ENSG00000214381 OTTHUMG00000159206 uc003dxn.6 AK123226 NR_026767 +HGNC:43426 LINC00489 long intergenic non-protein coding RNA 489 non-coding RNA RNA, long non-coding Approved 20q11.23 20q11.23 2011-10-20 2012-10-12 100861522 ENSG00000225759 OTTHUMG00000046198 uc031rte.1 DB341379 NR_047461 +HGNC:43428 LINC00491 long intergenic non-protein coding RNA 491 non-coding RNA RNA, long non-coding Approved 5q21.1 05q21.1 BC008363 2011-10-20 2014-09-10 285708 ENSG00000250682 OTTHUMG00000162775 uc032vev.2 CN270888 NR_103753 25200694 +HGNC:43429 LINC00492 long intergenic non-protein coding RNA 492 non-coding RNA RNA, long non-coding Approved 5q21.1 05q21.1 2011-10-20 2012-10-12 100861468 ENSG00000250958 OTTHUMG00000162776 uc032veu.2 CA314239 NR_047462 +HGNC:43430 LINC00493 long intergenic non-protein coding RNA 493 other unknown Approved 20p11.23 20p11.23 LOC388789 2011-10-20 2016-07-19 388789 ENSG00000232388 OTTHUMG00000031978 uc002wrd.5 NR_015432 25392693 RGD:1566320 +HGNC:27657 LINC00494 long intergenic non-protein coding RNA 494 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2011-10-28 2014-11-18 284749 ENSG00000235621 OTTHUMG00000032682 uc002xtt.3 NR_026958 12477932 +HGNC:43435 LINC00498 long intergenic non-protein coding RNA 498 non-coding RNA RNA, long non-coding Approved 4q28.3 04q28.3 2011-10-28 2012-10-12 100874046 ENSG00000248397 OTTHUMG00000161288 uc062zqr.1 +HGNC:43436 LINC00499 long intergenic non-protein coding RNA 499 non-coding RNA RNA, long non-coding Approved 4q28.3 04q28.3 2011-10-28 2012-10-12 100874047 ENSG00000251372 OTTHUMG00000161286 uc031sha.2 NR_051987 +HGNC:43437 LINC00500 long intergenic non-protein coding RNA 500 non-coding RNA RNA, long non-coding Approved 4q28.3 04q28.3 2011-10-28 2012-10-12 106480440 ENSG00000249381 OTTHUMG00000161287 uc062zqw.1 +HGNC:43439 LINC00501 long intergenic non-protein coding RNA 501 non-coding RNA RNA, long non-coding Approved 3q26.32 03q26.32 2011-10-28 2012-10-12 100820709 ENSG00000203645 OTTHUMG00000157234 uc032skk.2 AK055528 NR_047465 +HGNC:43442 LINC00502 long intergenic non-protein coding RNA 502 non-coding RNA RNA, long non-coding Approved 10q23.31 10q23.31 2011-10-28 2012-10-12 100874184 ENSG00000224851 OTTHUMG00000018738 uc057uvm.1 NR_047467 +HGNC:43555 LINC00504 long intergenic non-protein coding RNA 504 non-coding RNA RNA, long non-coding Approved 4p15.33 04p15.33 2011-11-07 2012-10-12 201853 ENSG00000248360 OTTHUMG00000160121 uc003gne.4 NR_126435 +HGNC:43556 LINC00505 long intergenic non-protein coding RNA 505 non-coding RNA RNA, long non-coding Approved 1p33 01p33 2011-11-07 2012-10-12 100874049 ENSG00000225667 OTTHUMG00000007985 +HGNC:43557 LINC00506 long intergenic non-protein coding RNA 506 non-coding RNA RNA, long non-coding Approved 3p12.1 03p12.1 2011-11-07 2012-10-12 100846978 ENSG00000281392 OTTHUMG00000189538 uc032rtd.2 BC030609 NR_047469 +HGNC:43558 LINC00507 long intergenic non-protein coding RNA 507 non-coding RNA RNA, long non-coding Approved 12q24.32 12q24.32 2011-11-07 2012-10-12 100862680 ENSG00000256193 OTTHUMG00000168425 uc058vbt.1 NR_046392 +HGNC:43559 LINC00508 long intergenic non-protein coding RNA 508 non-coding RNA RNA, long non-coding Approved 12q24.32 12q24.32 2011-11-07 2012-10-12 104472718 ENSG00000256971 OTTHUMG00000168426 uc058vbu.1 NR_126452 +HGNC:43564 LINC00511 long intergenic non-protein coding RNA 511 non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 onco-lncRNA-12 2011-11-07 2015-07-29 400619 ENSG00000227036 OTTHUMG00000132227 uc060jkf.1 AK129994 NR_033876 25864709 +HGNC:27549 LINC00514 long intergenic non-protein coding RNA 514 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 2011-11-23 2012-10-12 283875 AK098017 NR_033861 +HGNC:16019 LINC00515 long intergenic non-protein coding RNA 515 non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 PRED21 C21orf71 chromosome 21 open reading frame 71 2002-11-26 2011-11-23 2011-11-23 2012-10-12 282566 AF086441 NR_024092 +HGNC:19831 LINC00517 long intergenic non-protein coding RNA 517 non-coding RNA RNA, long non-coding Approved 14q21.1 14q21.1 C14orf26 chromosome 14 open reading frame 26 2003-01-13 2011-12-07 2011-12-07 2012-10-12 400208 ENSG00000259091 OTTHUMG00000170594 uc001wuk.3 AA029430 NR_135286 +HGNC:28626 LINC00518 long intergenic non-protein coding RNA 518 non-coding RNA RNA, long non-coding Approved 6p24.3 06p24.3 MGC40222 C6orf218 chromosome 6 open reading frame 218 2006-04-04 2011-11-25 2011-11-25 2014-11-19 221718 ENSG00000183674 OTTHUMG00000159175 uc063ltt.1 BC028118 NR_027793 Q8N0U6 "12477932|24906614" +HGNC:19838 LINC00519 long intergenic non-protein coding RNA 519 non-coding RNA RNA, long non-coding Approved 14q22.1 14q22.1 C14orf30 chromosome 14 open reading frame 30 2002-11-27 2011-11-29 2011-11-29 2012-10-12 161342 ENSG00000258955 OTTHUMG00000171090 uc059blq.1 BG121773 +HGNC:19843 LINC00520 long intergenic non-protein coding RNA 520 non-coding RNA RNA, long non-coding Approved 14q22.3 14q22.3 C14orf34 chromosome 14 open reading frame 34 2002-11-27 2011-11-29 2011-11-29 2012-10-12 645687 ENSG00000258791 OTTHUMG00000171059 uc059buh.1 BF572611 NR_026796 +HGNC:19860 LINC00521 long intergenic non-protein coding RNA 521 non-coding RNA RNA, long non-coding Approved 14q32.12 14q32.12 C14orf48 chromosome 14 open reading frame 48 2002-11-27 2011-11-29 2011-11-29 2014-11-18 256369 ENSG00000175699 OTTHUMG00000156974 uc001ycg.2 BI463117 NR_024182 Q8NCU1 +HGNC:20117 LINC00523 long intergenic non-protein coding RNA 523 non-coding RNA RNA, long non-coding Approved 14q32.2 14q32.2 C14orf70 chromosome 14 open reading frame 70 2003-01-13 2011-11-30 2011-11-30 2012-10-12 283601 ENSG00000196273 OTTHUMG00000171592 uc059ffm.1 NR_024096 Q86TU6 +HGNC:20118 LINC00524 long intergenic non-protein coding RNA 524 non-coding RNA RNA, long non-coding Approved 14q32.31 14q32.31 C14orf71 chromosome 14 open reading frame 71 2003-01-13 2011-11-30 2011-11-30 2012-10-12 338002 ENSG00000259023 OTTHUMG00000171679 uc059fhz.1 AA843471 NR_126006 +HGNC:40290 LINC00525 long intergenic non-protein coding RNA 525 non-coding RNA RNA, long non-coding Approved 7p12.3 07p12.3 2011-12-05 2014-11-18 84847 ENSG00000146666 OTTHUMG00000155644 uc003tnx.3 BC007354 NR_038407 +HGNC:28278 LINC00526 long intergenic non-protein coding RNA 526 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 "MGC17515|HsT959" C18orf18 chromosome 18 open reading frame 18 2004-05-05 2011-12-07 2011-12-07 2014-11-19 147525 ENSG00000264575 OTTHUMG00000178804 uc010wzd.3 BC010538 NR_026849 Q96FQ7 12477932 +HGNC:17215 LINC00527 long intergenic non-protein coding RNA 527 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 C21orf104 chromosome 21 open reading frame 104 2003-10-01 2011-12-07 2011-12-07 2014-11-18 54748 AJ011409 Q9UJ94 +HGNC:26875 LINC00528 long intergenic non-protein coding RNA 528 non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 FLJ40542 C22orf37 chromosome 22 open reading frame 37 2006-10-17 2011-12-07 2011-12-07 2012-10-12 200298 ENSG00000269220 OTTHUMG00000186097 uc062bhn.1 AK097861 NR_103718 Q8N1L1 14702039 LINC00528 +HGNC:15544 LINC00529 long intergenic non-protein coding RNA 529 non-coding RNA RNA, long non-coding Approved 8p23-p22 08p23-p22 C8orf8 chromosome 8 open reading frame 8 2001-04-25 2011-12-08 2011-12-08 2012-10-12 83647 ENSG00000236827 OTTHUMG00000165427 uc064kfp.1 AJ301561 11896452 +HGNC:18690 LINC00533 long intergenic non-protein coding RNA 533 non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 "bA373N24.1|C6orf39" C6orf38 chromosome 6 open reading frame 38 2003-11-26 2011-12-13 2011-12-13 2016-10-05 387055 ENSG00000235570 OTTHUMG00000016245 uc063mlx.1 "AA913908|AI688709" NR_135285 +HGNC:43643 LINC00534 long intergenic non-protein coding RNA 534 non-coding RNA RNA, long non-coding Approved 8q21.3 08q21.3 2011-12-13 2012-10-12 100874052 ENSG00000253394 OTTHUMG00000163968 uc031tbq.2 NR_051989 +HGNC:43644 LINC00535 long intergenic non-protein coding RNA 535 non-coding RNA RNA, long non-coding Approved 8q22.1 08q22.1 2011-12-13 2012-10-12 642924 ENSG00000246662 OTTHUMG00000164234 uc064onl.1 NR_033858 +HGNC:43645 LINC00536 long intergenic non-protein coding RNA 536 non-coding RNA RNA, long non-coding Approved 8q23.3 08q23.3 2011-12-13 2012-10-12 100859921 ENSG00000249917 OTTHUMG00000164936 uc031tcc.1 BC040336 NR_046215 +HGNC:43654 LINC00537 long intergenic non-protein coding RNA 537 non-coding RNA RNA, long non-coding Approved 9q13 09q13 2012-01-16 2012-10-12 203274 BC110369 +HGNC:43655 LINC00538 long intergenic non-protein coding RNA 538 non-coding RNA RNA, long non-coding Approved 1q32.3 01q32.3 "Yiya|PROX1UT" PROX1 upstream transcript 2012-01-23 2014-06-23 100861504 ENSG00000281664 OTTHUMG00000189733 uc057pjj.1 JF495099 NR_046189 22258142 614635 +HGNC:43672 LINC00539 long intergenic non-protein coding RNA 539 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 LINC00422 long intergenic non-protein coding RNA 422 2012-01-30 2015-01-29 100652865 ENSG00000224429 OTTHUMG00000016541 uc058vvj.1 BG940872 NR_103840 +HGNC:43673 LINC00540 long intergenic non-protein coding RNA 540 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2012-01-30 2012-10-12 100506622 ENSG00000276476 OTTHUMG00000187111 uc001uoi.4 "AK054845|BC035104" NR_103810 +HGNC:43678 LINC00543 long intergenic non-protein coding RNA 543 non-coding RNA RNA, long non-coding Approved 13q12.2 13q12.2 2012-01-30 2012-10-12 100132234 ENSG00000260704 OTTHUMG00000170880 uc058wbx.1 "CB142335|AI262987" NR_135254 +HGNC:43679 LINC00544 long intergenic non-protein coding RNA 544 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2012-09-12 2014-09-30 440131 ENSG00000122043 OTTHUMG00000016659 uc010aav.4 NR_033889 LINC00544 +HGNC:43680 LINC00545 long intergenic non-protein coding RNA 545 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2012-01-30 2012-10-12 440132 ENSG00000236094 OTTHUMG00000016678 uc032aax.2 "AW971998|AA514237" NR_103813 +HGNC:43682 LINC00547 long intergenic non-protein coding RNA 547 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 FLJ34747 2012-01-30 2012-10-12 400121 ENSG00000275226 OTTHUMG00000187339 uc001uwn.1 AK092066 NR_040244 +HGNC:43683 LINC00548 long intergenic non-protein coding RNA 548 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 FLJ42392 2012-01-30 2012-10-12 400123 uc021rim.1 AK124383 NR_033877 +HGNC:43688 LINC00550 long intergenic non-protein coding RNA 550 non-coding RNA RNA, long non-coding Approved 13q21.33 13q21.33 2012-01-30 2012-10-12 338862 ENSG00000281778 OTTHUMG00000189544 uc001vio.4 BC042673 NR_038878 +HGNC:43691 LINC00551 long intergenic non-protein coding RNA 551 non-coding RNA RNA, long non-coding Approved 13q33.3 13q33.3 2012-01-30 2013-09-05 283483 ENSG00000272274 OTTHUMG00000185758 uc031qne.2 AK098538 NR_051977 +HGNC:43692 LINC00552 long intergenic non-protein coding RNA 552 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2012-01-30 2015-01-29 100130386 ENSG00000279770 OTTHUMG00000186842 uc010tkg.2 AK057435 NR_028064 +HGNC:43697 LINC00554 long intergenic non-protein coding RNA 554 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 2012-01-31 2012-10-12 100861542 ENSG00000260738 OTTHUMG00000176067 uc032ank.2 BC068276 NR_047483 +HGNC:43699 LINC00555 long intergenic non-protein coding RNA 555 non-coding RNA RNA, long non-coding Approved 13q33.1 13q33.1 2012-01-31 2012-10-12 100861543 ENSG00000261057 OTTHUMG00000176068 uc058ybx.1 AF339825 +HGNC:43700 LINC00556 long intergenic non-protein coding RNA 556 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2012-01-31 2012-10-12 100861551 ENSG00000260131 OTTHUMG00000175961 uc058vtx.1 AF086361 +HGNC:43701 LINC00557 long intergenic non-protein coding RNA 557 non-coding RNA RNA, long non-coding Approved 13q32.1 13q32.1 2012-01-31 2012-10-12 100861544 ENSG00000260962 OTTHUMG00000176061 uc058xtt.1 AF339811 NR_047487 +HGNC:43702 LINC00558 long intergenic non-protein coding RNA 558 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 2012-01-31 2014-05-09 100861552 ENSG00000261517 OTTHUMG00000176029 uc031qlu.1 BC041877 NR_047488 +HGNC:43703 LINC00559 long intergenic non-protein coding RNA 559 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 2012-01-31 2012-10-12 100874187 ENSG00000261446 OTTHUMG00000176057 uc031qmr.3 BC043442 NR_047489 +HGNC:43704 LINC00560 long intergenic non-protein coding RNA 560 non-coding RNA RNA, long non-coding Approved 13q31.2 13q31.2 2012-01-31 2012-10-12 100861553 ENSG00000261666 OTTHUMG00000176053 uc058xsg.1 BC043278 NR_047490 +HGNC:43705 LINC00561 long intergenic non-protein coding RNA 561 non-coding RNA RNA, long non-coding Approved 13q22.2 13q22.2 2012-01-31 2012-10-12 100861545 ENSG00000261206 OTTHUMG00000176038 uc058xnw.1 BC034981 +HGNC:43706 LINC00562 long intergenic non-protein coding RNA 562 non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 2012-01-31 2012-10-12 100861549 ENSG00000260388 OTTHUMG00000175994 uc058wxo.1 AK123146 NR_047492 +HGNC:43707 LINC00563 long intergenic non-protein coding RNA 563 non-coding RNA RNA, long non-coding Approved 13q14.13 13q14.13 2012-01-31 2012-10-12 100861554 ENSG00000261097 OTTHUMG00000175991 uc031qll.1 U79295 NR_047493 +HGNC:43708 LINC00564 long intergenic non-protein coding RNA 564 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 2012-01-31 2012-10-12 100861546 ENSG00000260094 OTTHUMG00000176051 uc058xrm.1 BC039360 NR_047494 +HGNC:43709 LINC00565 long intergenic non-protein coding RNA 565 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2012-01-31 2012-10-12 100861555 ENSG00000260910 OTTHUMG00000176086 uc031qnq.2 AK092053 NR_047495 +HGNC:43710 LINC00566 long intergenic non-protein coding RNA 566 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 2012-01-31 2012-10-12 100861547 ENSG00000261498 OTTHUMG00000175964 uc001upk.4 BC038727 NR_131903 +HGNC:43711 LINC00567 long intergenic non-protein coding RNA 567 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2012-01-31 2012-10-12 283486 ENSG00000259831 OTTHUMG00000176071 uc058yhl.1 BC035264 NR_135280 +HGNC:43717 LINC00570 long intergenic non-protein coding RNA 570 non-coding RNA RNA, long non-coding Approved 2p25.1 02p25.1 ncRNA-a5 Long non-coding RNAs 788 2012-02-02 2014-10-22 100874055 ENSG00000224177 OTTHUMG00000151818 uc031rnr.1 "BX102688|AI493106" NR_047499 20887892 LINC00570 +HGNC:43721 LINC00571 long intergenic non-protein coding RNA 571 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 2012-02-06 2012-10-12 100874188 ENSG00000223685 OTTHUMG00000016755 uc031qle.1 "BM023585|BF887755" NR_047500 +HGNC:43722 LINC00572 long intergenic non-protein coding RNA 572 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2012-02-06 2012-10-12 100861573 ENSG00000224405 OTTHUMG00000016662 uc032aap.1 BC039674 NR_047501 +HGNC:21598 LINC00574 long intergenic non-protein coding RNA 574 non-coding RNA RNA, long non-coding Approved 6q27 06q27 "FLJ13162|dJ182D15.1" C6orf208 chromosome 6 open reading frame 208 2003-11-26 2012-02-22 2012-02-22 2012-10-12 80069 ENSG00000231690 OTTHUMG00000016071 uc010kkz.3 AK023224 NR_026780 Q9H8X3 +HGNC:21342 LINC00575 long intergenic non-protein coding RNA 575 non-coding RNA RNA, long non-coding Approved 4q21.22 04q21.22 C4orf11 chromosome 4 open reading frame 11 2003-06-09 2012-02-24 2012-02-24 2016-10-05 439934 ENSG00000231782 OTTHUMG00000161121 uc011cck.2 AY316301 NR_024087 Q6W349 15218245 +HGNC:43807 LINC00578 long intergenic non-protein coding RNA 578 non-coding RNA RNA, long non-coding Approved 3q26.32 03q26.32 2012-03-12 2012-10-12 100505566 ENSG00000228221 OTTHUMG00000157222 uc062qcq.1 BX101293 NR_047568 +HGNC:43840 LINC00581 long intergenic non-protein coding RNA 581 non-coding RNA RNA, long non-coding Approved 6p22.3 06p22.3 Long non-coding RNAs 788 2012-03-26 2014-10-22 100874531 ENSG00000280989 OTTHUMG00000189558 uc032woc.2 BX118339 NR_103790 22245136 BX118339 +HGNC:43842 LINC00582 long intergenic non-protein coding RNA 582 non-coding RNA RNA, long non-coding Approved 1q42.2 01q42.2 2012-03-26 2012-10-12 100287814 ENSG00000229228 OTTHUMG00000039488 uc021pkm.3 NR_034037 +HGNC:31437 LINC00583 long intergenic non-protein coding RNA 583 non-coding RNA RNA, long non-coding Approved 9p23 09p23 C9orf146 chromosome 9 open reading frame 146 2007-08-02 2012-04-03 2012-04-03 2014-11-18 100113404 ENSG00000205636 OTTHUMG00000019564 uc022bdn.2 NR_038194 LINC00583 +HGNC:31372 LINC00587 long intergenic non-protein coding RNA 587 non-coding RNA RNA, long non-coding Approved 9q31.1 09q31.1 bA785H23.1 C9orf107 chromosome 9 open reading frame 107 2004-06-02 2012-04-11 2012-04-11 2012-10-12 414319 ENSG00000204250 OTTHUMG00000020393 uc033ddi.2 BC038565 NR_103830 B1AMM8 +HGNC:24494 LINC00588 long intergenic non-protein coding RNA 588 non-coding RNA RNA, long non-coding Approved 8q12.1 08q12.1 DKFZP434F122 C8orf71 chromosome 8 open reading frame 71 2005-09-22 2012-04-17 2012-04-17 2012-10-12 26138 ENSG00000215117 OTTHUMG00000164424 uc003xtg.3 NR_026772 Q9Y4M8 11230166 +HGNC:32299 LINC00589 long intergenic non-protein coding RNA 589 non-coding RNA RNA, long non-coding Approved 8p12 08p12 C8orf75 chromosome 8 open reading frame 75 2005-09-23 2012-04-17 2012-04-17 2012-10-12 619351 ENSG00000251191 OTTHUMG00000163800 uc064lqy.1 "BC003524|BC014230" NR_026765 +HGNC:27474 LINC00592 long intergenic non-protein coding RNA 592 non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 2012-04-27 2012-10-12 283404 ENSG00000258279 OTTHUMG00000169627 uc010snp.3 BC039104 NR_027358 +HGNC:32382 LINC00593 long intergenic non-protein coding RNA 593 non-coding RNA RNA, long non-coding Approved 15q23 15q23 MGC42951 C15orf50 chromosome 15 open reading frame 50 2005-11-24 2012-04-30 2012-04-30 2012-10-12 414926 ENSG00000259703 OTTHUMG00000172102 uc002asj.4 BC031958 NR_026764 12477932 +HGNC:32358 LINC00594 long intergenic non-protein coding RNA 594 non-coding RNA RNA, long non-coding Approved 15q15.1 15q15.1 C15orf36 chromosome 15 open reading frame 36 2005-10-21 2012-04-30 2012-04-30 2015-01-29 641314 ENSG00000259714 OTTHUMG00000172453 AI278850 +HGNC:31430 LINC00595 long intergenic non-protein coding RNA 595 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 C10orf101 chromosome 10 open reading frame 101 2004-05-27 2012-04-30 2012-04-30 2012-10-12 414243 ENSG00000227136 OTTHUMG00000018552 "AA256890|BQ082446|BQ070817" NR_073447 +HGNC:23167 LINC00596 long intergenic non-protein coding RNA 596 non-coding RNA RNA, long non-coding Approved 14q11.2 14q11.2 CNSLT1I7G C14orf165 chromosome 14 open reading frame 165 2004-06-11 2012-04-30 2012-04-30 2012-10-12 414767 ENSG00000259334 OTTHUMG00000171723 uc031qny.3 "BX161431|CR615368" Q86U02 +HGNC:1193 LINC00597 long intergenic non-protein coding RNA 597 non-coding RNA RNA, long non-coding Approved 15q23-q24 15q23-q24 C15orf5 chromosome 15 open reading frame 5 1999-12-22 2012-04-30 2012-04-30 2012-10-12 81698 AL109679 NR_026813 Q9H2U6 +HGNC:42770 LINC00598 long intergenic non-protein coding RNA 598 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 TTL twelve-thirteen translocation leukemia transcript (non-protein coding) 2012-05-01 2013-08-08 646982 ENSG00000215483 OTTHUMG00000016772 uc001uxk.3 NR_024505 12764377 +HGNC:27231 LINC00599 long intergenic non-protein coding RNA 599 non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 Rncr3 retinal non-coding RNA 3 Long non-coding RNAs 788 2012-05-01 2016-10-03 157627 ENSG00000253230 OTTHUMG00000163734 uc064kea.1 AF052108 NR_024281 "8619474|9110174|27253412" rncr3 +HGNC:43916 LINC00601 long intergenic non-protein coding RNA 601 non-coding RNA RNA, long non-coding Approved 10q26.2 10q26.2 2012-05-03 2012-10-12 101101772 ENSG00000235180 OTTHUMG00000019244 uc031pxp.1 BF215388 NR_073453 +HGNC:43917 LINC00602 long intergenic non-protein coding RNA 602 non-coding RNA RNA, long non-coding Approved 6q27 06q27 2012-05-03 2012-10-12 441177 ENSG00000281832 OTTHUMG00000189549 uc011egm.4 BC110806 NR_027284 +HGNC:43918 LINC00603 long intergenic non-protein coding RNA 603 non-coding RNA RNA, long non-coding Approved 5p13.1 05p13.1 2012-05-01 2012-10-12 102467077 ENSG00000250048 OTTHUMG00000162195 uc032urs.1 "BG181872|BX100325" NR_104633 +HGNC:43924 LINC00604 long intergenic non-protein coding RNA 604 non-coding RNA RNA, long non-coding Approved 5p13.1 05p13.1 2012-05-04 2012-10-12 106144578 ENSG00000250585 OTTHUMG00000162074 uc063det.1 "AI539454|BX115904" +HGNC:43928 LINC00605 long intergenic non-protein coding RNA 605 non-coding RNA RNA, long non-coding Approved 14q32.32 14q32.32 2012-05-04 2012-10-12 100131366 ENSG00000251533 OTTHUMG00000171894 uc001ymn.3 BC035396 NR_033938 +HGNC:43931 LINC00606 long intergenic non-protein coding RNA 606 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 2012-05-04 2012-10-12 285370 ENSG00000226567 OTTHUMG00000155455 uc003bvx.1 AK093398 NR_027102 +HGNC:43944 LINC00607 long intergenic non-protein coding RNA 607 non-coding RNA RNA, long non-coding Approved 2q35 02q35 2012-05-11 2012-10-12 646324 ENSG00000235770 OTTHUMG00000154834 uc002vfm.1 AK091865 NR_037195 +HGNC:27179 LINC00608 long intergenic non-protein coding RNA 608 non-coding RNA RNA, long non-coding Approved 2q35 02q35 2012-05-11 2014-11-18 151300 ENSG00000236445 OTTHUMG00000154665 uc061spq.1 BC033552 NR_015390 12477932 +HGNC:43960 LINC00609 long intergenic non-protein coding RNA 609 non-coding RNA RNA, long non-coding Approved 14q13.2-q13.3 14q13.2-q13.3 2012-05-16 2012-10-12 101101773 ENSG00000257585 OTTHUMG00000170616 uc031qog.1 DN993271 NR_073454 +HGNC:23262 LINC00610 long intergenic non-protein coding RNA 610 non-coding RNA RNA, long non-coding Approved 11p13 11p13 FLJ45212 C11orf55 chromosome 11 open reading frame 55 2006-02-11 2012-05-16 2012-05-16 2015-01-29 399879 OTTHUMG00000156310 AK127155 Q6ZST8 +HGNC:28621 LINC00612 long intergenic non-protein coding RNA 612 non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 "MGC40170|FLJ41814" C12orf33 chromosome 12 open reading frame 33 2006-01-20 2012-05-30 2012-05-30 2012-10-12 253128 ENSG00000214851 OTTHUMG00000168288 uc009zgh.3 BC028195 NR_034140 Q8N6U2 12477932 +HGNC:44060 LINC00613 long intergenic non-protein coding RNA 613 non-coding RNA RNA, long non-coding Approved 4q28.3 04q28.3 2012-05-30 2012-10-12 100507528 ENSG00000248330 OTTHUMG00000161224 uc032txr.2 AW237894 NR_103762 +HGNC:30165 LINC00614 long intergenic non-protein coding RNA 614 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 FLJ35853 C10orf52 chromosome 10 open reading frame 52 2004-05-27 2012-05-30 2012-05-30 2014-11-18 645587 ENSG00000236983 OTTHUMG00000017850 uc057sjh.1 P0C842 +HGNC:26343 LINC00615 long intergenic non-protein coding RNA 615 non-coding RNA RNA, long non-coding Approved 12q21.33 12q21.33 FLJ25378 C12orf37 chromosome 12 open reading frame 37 2006-01-23 2012-05-30 2012-05-30 2012-10-12 439916 ENSG00000196243 OTTHUMG00000170071 uc021rbs.2 AK058107 NR_038868 Q96LM1 +HGNC:44065 LINC00616 long intergenic non-protein coding RNA 616 non-coding RNA RNA, long non-coding Approved 4q28.3 04q28.3 2012-05-30 2012-10-12 641365 ENSG00000248307 OTTHUMG00000161281 uc003ihh.4 NR_037866 +HGNC:20110 LINC00618 long intergenic non-protein coding RNA 618 non-coding RNA RNA, long non-coding Approved 14q32.2 14q32.2 C14orf63 chromosome 14 open reading frame 63 2002-12-18 2012-07-05 2012-07-05 2012-10-12 145249 ENSG00000225163 OTTHUMG00000171460 uc059eyf.1 AA055628 NR_104113 +HGNC:31657 LINC00619 long intergenic non-protein coding RNA 619 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 bA168P8.1 C10orf136 chromosome 10 open reading frame 136 2004-05-27 2012-07-12 2012-07-12 2012-10-12 414260 ENSG00000204187 OTTHUMG00000018048 uc021ppi.1 BC017939 NR_033923 +HGNC:44223 LINC00620 long intergenic non-protein coding RNA 620 non-coding RNA RNA, long non-coding Approved 3p25.1 03p25.1 2012-07-16 2013-03-14 285375 ENSG00000224514 OTTHUMG00000155508 uc003byd.2 BC039529 NR_027103 "23478628|21368711" +HGNC:44227 LINC00621 long intergenic non-protein coding RNA 621 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 2012-07-23 2012-10-12 100996930 ENSG00000262619 OTTHUMG00000177835 uc058vwo.1 AK091626 XR_001749782 +HGNC:44251 LINC00622 long intergenic non-protein coding RNA 622 non-coding RNA RNA, long non-coding Approved 1p12 01p12 2012-07-25 2012-10-12 644242 ENSG00000260941 OTTHUMG00000176048 uc021osv.2 "AK123168|BC015390" NR_036540 +HGNC:44252 LINC00623 long intergenic non-protein coding RNA 623 non-coding RNA RNA, long non-coding Approved 1p11.2 01p11.2 2012-07-25 2016-10-05 728855 ENSG00000226067 OTTHUMG00000185016 uc057jwx.1 NR_024584 +HGNC:44254 LINC00624 long intergenic non-protein coding RNA 624 non-coding RNA RNA, long non-coding Approved 1q21.1-q21.2 01q21.1-q21.2 2012-07-25 2016-10-11 100289211 ENSG00000278811 OTTHUMG00000041476 uc057kep.1 NR_038423 +HGNC:44257 LINC00626 long intergenic non-protein coding RNA 626 non-coding RNA RNA, long non-coding Approved 1q24.2 01q24.2 MGC4473 2012-07-25 2012-10-12 79100 ENSG00000225826 OTTHUMG00000034551 uc001gfq.4 BC001841 NR_024160 +HGNC:27008 LINC00628 long intergenic non-protein coding RNA 628 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 2012-07-25 2012-10-12 127841 ENSG00000280924 OTTHUMG00000189537 uc010pqu.2 BC015457 NR_027022 12477932 +HGNC:44262 LINC00629 long intergenic non-protein coding RNA 629 non-coding RNA RNA, long non-coding Approved Xq26.3 Xq26.3 2012-08-01 2012-10-12 100506757 ENSG00000227060 OTTHUMG00000022456 uc004exn.2 BQ374946 NR_038998 +HGNC:44263 LINC00630 long intergenic non-protein coding RNA 630 non-coding RNA RNA, long non-coding Approved Xq22.1 Xq22.1 2012-08-01 2012-10-12 100287765 ENSG00000223546 OTTHUMG00000022077 uc004ejq.3 "BC032741|BC040959|DA332880" NR_038988 +HGNC:27865 LINC00632 long intergenic non-protein coding RNA 632 non-coding RNA RNA, long non-coding Approved Xq27.1 Xq27.1 2013-05-17 2014-11-19 286411 ENSG00000203930 OTTHUMG00000022548 AK054978 NR_028344 24833871 +HGNC:44269 LINC00633 long intergenic non-protein coding RNA 633 non-coding RNA RNA, long non-coding Approved Xq26.3 Xq26.3 2012-08-02 2012-10-12 100129515 ENSG00000224107 OTTHUMG00000022469 uc004eyi.5 "AI015085|AY730280" NR_033941 +HGNC:27930 LINC00634 long intergenic non-protein coding RNA 634 non-coding RNA RNA, long non-coding Approved 22q13.2 22q13.2 2012-08-07 2014-11-18 339674 ENSG00000205704 OTTHUMG00000151274 NR_024355 12477932 MGI:1923755 +HGNC:27184 LINC00635 long intergenic non-protein coding RNA 635 non-coding RNA RNA, long non-coding Approved 3q13.12 03q13.12 2012-08-07 2012-10-12 151658 ENSG00000241469 OTTHUMG00000159195 uc003dwp.5 BC045586 NR_015414 12477932 +HGNC:27702 LINC00636 long intergenic non-protein coding RNA 636 non-coding RNA RNA, long non-coding Approved 3q13.12 03q13.12 2012-08-07 2014-11-18 285205 ENSG00000240423 OTTHUMG00000159197 uc062mfu.1 NR_015394 12477932 +HGNC:27069 LINC00637 long intergenic non-protein coding RNA 637 non-coding RNA RNA, long non-coding Approved 14q32.33 14q32.33 2012-08-08 2012-10-12 145216 ENSG00000258735 OTTHUMG00000171648 uc001yoh.1 NR_038436 +HGNC:28325 LINC00638 long intergenic non-protein coding RNA 638 non-coding RNA RNA, long non-coding Approved 14q32.33 14q32.33 MGC23270 2012-08-08 2012-10-12 196872 ENSG00000258701 OTTHUMG00000170791 uc001ypq.5 NR_024396 12477932 +HGNC:27502 LINC00639 long intergenic non-protein coding RNA 639 non-coding RNA RNA, long non-coding Approved 14q21.1 14q21.1 2012-08-08 2012-10-12 283547 ENSG00000259070 OTTHUMG00000170746 uc001wun.4 "AK125018|AK127318|BC035119" NR_039982 +HGNC:44291 LINC00640 long intergenic non-protein coding RNA 640 non-coding RNA RNA, long non-coding Approved 14q22.1 14q22.1 2012-08-08 2012-10-12 283553 ENSG00000258479 OTTHUMG00000171072 uc059blr.1 NR_038358 +HGNC:27511 LINC00641 long intergenic non-protein coding RNA 641 non-coding RNA RNA, long non-coding Approved 14q11.2 14q11.2 2012-08-08 2012-10-12 283624 ENSG00000258441 OTTHUMG00000170756 uc021rov.2 "AK092333|AK093962" NR_038970 +HGNC:44293 LINC00642 long intergenic non-protein coding RNA 642 non-coding RNA RNA, long non-coding Approved 14q32.11 14q32.11 2012-08-08 2012-10-12 400238 ENSG00000233208 OTTHUMG00000149923 uc021ryj.2 "BC036259|BX101323" NR_033986 +HGNC:44296 LINC00643 long intergenic non-protein coding RNA 643 non-coding RNA RNA, long non-coding Approved 14q23.2 14q23.2 2012-08-08 2012-10-12 646113 ENSG00000186369 OTTHUMG00000171566 uc059cgy.1 NR_015358 Q86TS7 +HGNC:44297 LINC00644 long intergenic non-protein coding RNA 644 non-coding RNA RNA, long non-coding Approved 14q23.2 14q23.2 2012-08-08 2014-01-30 101954204 ENSG00000259142 OTTHUMG00000171117 uc032bdr.2 AW292481 NR_104063 +HGNC:44299 LINC00645 long intergenic non-protein coding RNA 645 non-coding RNA RNA, long non-coding Approved 14q12 14q12 2012-08-08 2012-10-12 100505967 ENSG00000258548 OTTHUMG00000170580 uc001wqc.4 "BC042069|BX538073|BX538140" NR_039992 +HGNC:44302 LINC00648 long intergenic non-protein coding RNA 648 non-coding RNA RNA, long non-coding Approved 14q21.3 14q21.3 2012-08-08 2012-10-12 100506433 ENSG00000259129 OTTHUMG00000170822 uc001wwk.3 "AK056212|CA435241" NR_039996 +HGNC:44305 LINC00649 long intergenic non-protein coding RNA 649 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 TCONS_00028768 2012-08-08 2015-11-04 100506334 ENSG00000237945 OTTHUMG00000065819 uc061zur.1 DA374118 NR_038883 26421281 +HGNC:44306 LINC00650 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-02-18 +HGNC:25003 LINC00652 long intergenic non-protein coding RNA 652 non-coding RNA RNA, long non-coding Approved 20p11.23 20p11.23 HSPC072 2012-08-09 2014-11-18 29075 ENSG00000179935 OTTHUMG00000031986 uc002wrg.3 "AF161557|BC029555" NR_026883 11042152 +HGNC:27154 LINC00654 long intergenic non-protein coding RNA 654 non-coding RNA RNA, long non-coding Approved 20p12.3 20p12.3 2012-08-09 2012-10-12 149837 ENSG00000205181 OTTHUMG00000031810 uc061vgg.1 BC067900 NR_015406 +HGNC:27304 LINC00656 long intergenic non-protein coding RNA 656 non-coding RNA RNA, long non-coding Approved 20p11.21 20p11.21 2012-08-09 2014-11-18 200261 ENSG00000233746 OTTHUMG00000133099 uc021wbi.3 "AF258576|CA748604|DA864592" NR_034149 +HGNC:44315 LINC00658 long intergenic non-protein coding RNA 658 non-coding RNA RNA, long non-coding Approved 20p12.3 20p12.3 2012-08-09 2012-10-12 100507629 ENSG00000226995 OTTHUMG00000031805 uc061vgc.1 BC035192 NR_038239 +HGNC:44316 LINC00659 long intergenic non-protein coding RNA 659 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 2012-08-09 2012-10-12 100652730 ENSG00000228705 OTTHUMG00000032931 uc061yjm.1 "DA633805|DB320598" NR_046224 +HGNC:27002 LINC00661 long intergenic non-protein coding RNA 661 non-coding RNA RNA, long non-coding Approved 19p13.12 19p13.12 2012-08-10 2012-10-12 126536 ENSG00000205396 OTTHUMG00000169715 uc002nbw.3 "AI184190|CR749400" NR_026828 12477932 +HGNC:27122 LINC00662 long intergenic non-protein coding RNA 662 non-coding RNA RNA, long non-coding Approved 19q11 19q11 2012-08-10 2012-10-12 148189 ENSG00000261824 uc060wlx.1 "AK311452|BC045720" NR_027301 12477932 +HGNC:28609 LINC00663 long intergenic non-protein coding RNA 663 non-coding RNA RNA, long non-coding Approved 19p13.11 19p13.11 MGC39821 2012-08-10 2012-10-12 284440 "AK289657|BC034236|DB196080" NR_026956 12477932 617117 +HGNC:44319 LINC00664 long intergenic non-protein coding RNA 664 non-coding RNA RNA, long non-coding Approved 19p12 19p12 2013-05-21 2013-05-21 400680 ENSG00000268658 OTTHUMG00000182847 NR_037194 +HGNC:44323 LINC00665 long intergenic non-protein coding RNA 665 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2012-08-10 2012-10-12 100506930 ENSG00000232677 OTTHUMG00000048145 uc060xom.1 "AI282277|BC041949|BU071001" NR_038278 +HGNC:27906 LINC00667 long intergenic non-protein coding RNA 667 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 2012-08-13 2012-10-12 339290 ENSG00000263753 OTTHUMG00000178805 uc002kmo.4 NR_015389 "8619474|9110174" +HGNC:44328 LINC00668 long intergenic non-protein coding RNA 668 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 2012-08-13 2012-10-12 400643 ENSG00000265933 OTTHUMG00000178875 uc002kng.1 NR_034100 +HGNC:44338 LINC00670 long intergenic non-protein coding RNA 670 non-coding RNA RNA, long non-coding Approved 17p12 17p12 FLJ34690 2012-08-14 2012-10-12 284034 ENSG00000179136 OTTHUMG00000058766 uc002gnl.3 "BC122870|DB255288" NR_034144 +HGNC:44339 LINC00671 long intergenic non-protein coding RNA 671 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 2012-08-14 2012-10-12 388387 ENSG00000213373 OTTHUMG00000132654 uc002iby.3 "AK055784|BC122868|DC361857" NR_027254 +HGNC:44353 LINC00672 long intergenic non-protein coding RNA 672 non-coding RNA RNA, long non-coding Approved 17q12 17q12 2012-08-17 2012-10-12 100505576 ENSG00000263874 OTTHUMG00000178440 uc002hrb.3 "AK090935|BC009632" NR_038847 +HGNC:44354 LINC00673 long intergenic non-protein coding RNA 673 non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 "HI-LNC75|SLNCR1" Human Islet Long Non Coding RNA 75 2012-08-17 2016-10-03 100499467 "AK000477|AK129763" NR_036488 "23040067|27210747|27213290" 617079 +HGNC:44355 LINC00674 long intergenic non-protein coding RNA 674 non-coding RNA RNA, long non-coding Approved 17q24.2 17q24.2 2012-08-17 2014-10-08 100499466 ENSG00000237854 OTTHUMG00000132303 "BC045718|DA232946" NR_027418 +HGNC:44356 LINC00675 long intergenic non-protein coding RNA 675 non-coding RNA RNA, long non-coding Approved 17p13.1-p12 17p13.1-p12 2012-08-17 2016-10-11 100289255 ENSG00000263429 OTTHUMG00000132847 uc002gmz.3 BC015790 NR_036581 +HGNC:44394 LINC00676 long intergenic non-protein coding RNA 676 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2012-09-24 2012-10-12 101409253 ENSG00000234854 OTTHUMG00000017340 uc032aov.2 AW816149 NR_103846 +HGNC:20121 LINC00677 long intergenic non-protein coding RNA 677 non-coding RNA RNA, long non-coding Approved 14q32.32 14q32.32 C14orf74 chromosome 14 open reading frame 74 2002-12-18 2012-09-28 2012-09-28 2016-08-22 105370683 ENSG00000259717 OTTHUMG00000171889 uc059foy.1 AW182802 XR_944243 +HGNC:44413 LINC00678 long intergenic non-protein coding RNA 678 non-coding RNA RNA, long non-coding Approved 11p14.1 11p14.1 2012-10-01 2012-10-12 101410541 ENSG00000254934 OTTHUMG00000166194 uc057zyj.1 "CD176172|CD049147" NR_102708 +HGNC:44417 LINC00680 long intergenic non-protein coding RNA 680 non-coding RNA RNA, long non-coding Approved 6p11.2 06p11.2 2012-10-01 2016-02-08 106660612 ENSG00000215190 OTTHUMG00000014928 uc003ped.5 "BC011838|BC017330" NR_125729 +HGNC:44423 LINC00681 long intergenic non-protein coding RNA 681 non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 2012-10-08 2012-10-12 101409254 ENSG00000255494 OTTHUMG00000129516 uc031tak.1 "BM725196|BM678210" NR_102423 +HGNC:44466 LINC00682 long intergenic non-protein coding RNA 682 non-coding RNA RNA, long non-coding Approved 4p13 04p13 2012-10-10 2012-10-16 101927074 ENSG00000245870 OTTHUMG00000160528 uc003gwh.5 BC025350 NR_104143 +HGNC:44467 LINC00683 long intergenic non-protein coding RNA 683 non-coding RNA RNA, long non-coding Approved 18q23 18q23 2012-10-15 2012-10-16 400660 ENSG00000266256 OTTHUMG00000179274 uc060qfg.1 AK094957 NR_120419 +HGNC:44268 LINC00684 long intergenic non-protein coding RNA 684 other unknown Approved Xq13.1 Xq13.1 DMRTC1-AS1 "DMRTC1 antisense RNA 1 (non-protein coding)|DMRTC1 antisense RNA 1" 2012-08-02 2012-10-16 2012-10-16 2016-07-19 100129407 ENSG00000275520 OTTHUMG00000188527 uc064zyc.1 NR_034116 LINC00684 +HGNC:27560 LINC00685 long intergenic non-protein coding RNA 685 non-coding RNA RNA, long non-coding Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 OTTHUMT00000055574 "CXYorf10|NCRNA00107|PPP2R3B-AS1" "chromosome X and Y open reading frame 10|non-protein coding RNA 107|PPP2R3B antisense RNA 1 (non-protein coding)|PPP2R3B antisense RNA 1" Pseudoautosomal region 1 715 2008-10-09 2012-10-17 2012-10-17 2012-10-17 283981 ENSG00000226179 OTTHUMG00000021049 uc065cmh.1 BC041934 NR_027231 12477932 +HGNC:16221 LINC00686 long intergenic non-protein coding RNA 686 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 bA93B14.2 C20orf90 chromosome 20 open reading frame 90 2001-07-17 2012-10-24 2012-10-24 2012-10-24 140865 ENSG00000237687 OTTHUMG00000032927 uc061yjj.1 D80415 +HGNC:16194 LINC00687 long intergenic non-protein coding RNA 687 non-coding RNA RNA, long non-coding Approved 20p12.2 20p12.2 dJ1012F16.1 C20orf61 chromosome 20 open reading frame 61 2001-07-17 2012-10-29 2012-10-29 2012-10-29 728450 ENSG00000228422 OTTHUMG00000031887 uc061vkj.1 BX092309 XR_109647 +HGNC:27217 LINC00689 long intergenic non-protein coding RNA 689 non-coding RNA RNA, long non-coding Approved 7q36.3 07q36.3 2012-11-06 2015-05-01 154822 ENSG00000231419 OTTHUMG00000151442 uc003wof.4 NR_024394 12477932 +HGNC:44503 LINC00690 long intergenic non-protein coding RNA 690 non-coding RNA RNA, long non-coding Approved 3p24.3 03p24.3 2012-11-13 2012-11-13 100996597 ENSG00000233570 OTTHUMG00000157049 uc003caz.3 BC034913 NR_103843 +HGNC:44514 LINC00691 long intergenic non-protein coding RNA 691 non-coding RNA RNA, long non-coding Approved 3p24.2 03p24.2 2012-11-13 2012-11-13 152024 ENSG00000224074 OTTHUMG00000155662 uc003ccv.3 NR_026834 +HGNC:27708 LINC00692 long intergenic non-protein coding RNA 692 non-coding RNA RNA, long non-coding Approved 3p24.2 03p24.2 2012-11-14 2014-11-19 285326 ENSG00000230891 OTTHUMG00000155601 uc003cdo.4 BC033370 NR_034055 12477932 +HGNC:44526 LINC00693 long intergenic non-protein coding RNA 693 non-coding RNA RNA, long non-coding Approved 3p24.1 03p24.1 2012-11-14 2012-11-14 645206 ENSG00000228214 OTTHUMG00000155718 uc021wur.2 NR_038840 +HGNC:44570 LINC00694 long intergenic non-protein coding RNA 694 other unknown Approved 3p21.31 03p21.31 2012-11-16 2016-07-20 100506301 ENSG00000225873 OTTHUMG00000156179 uc284pty.1 P0DN24 +HGNC:34426 LINC00696 long intergenic non-protein coding RNA 696 non-coding RNA RNA, long non-coding Approved 3p21.1 03p21.1 C3orf74 chromosome 3 open reading frame 74 2008-10-09 2012-11-20 2012-11-20 2014-11-19 100128378 AK127958 NR_027331 Q6ZRV3 +HGNC:27720 LINC00698 long intergenic non-protein coding RNA 698 non-coding RNA RNA, long non-coding Approved 3p14.2 03p14.2 2012-11-23 2014-11-18 285401 ENSG00000244342 OTTHUMG00000158701 uc003dlo.4 "BC039502|BC043407" NR_027104 +HGNC:27422 LINC00700 long intergenic non-protein coding RNA 700 non-coding RNA RNA, long non-coding Approved 10p15.3 10p15.3 2012-12-03 2014-11-18 282980 ENSG00000234962 OTTHUMG00000017547 uc001igo.3 AK097474 NR_040253 +HGNC:44674 LINC00701 long intergenic non-protein coding RNA 701 non-coding RNA RNA, long non-coding Approved 10p15.3 10p15.3 2012-12-03 2012-12-03 399708 ENSG00000234556 OTTHUMG00000017548 uc021pmj.2 BC055423 NR_038884 +HGNC:44676 LINC00702 long intergenic non-protein coding RNA 702 non-coding RNA RNA, long non-coding Approved 10p15.1 10p15.1 2012-12-03 2012-12-04 100652988 ENSG00000233117 OTTHUMG00000017572 uc031vvk.2 "DA655411|DB287388|CN281541" NR_108040 +HGNC:44677 LINC00703 long intergenic non-protein coding RNA 703 non-coding RNA RNA, long non-coding Approved 10p15.1 10p15.1 2012-12-03 2012-12-04 100507059 ENSG00000224382 OTTHUMG00000017573 uc001ihd.1 AK095699 NR_108055 +HGNC:44678 LINC00704 long intergenic non-protein coding RNA 704 non-coding RNA RNA, long non-coding Approved 10p15.1 10p15.1 2012-12-04 2012-12-04 100216001 ENSG00000231298 OTTHUMG00000017576 uc001ihf.5 BC048320 NR_024475 +HGNC:27874 LINC00705 long intergenic non-protein coding RNA 705 non-coding RNA RNA, long non-coding Approved 10p15.1 10p15.1 2012-12-04 2014-11-18 338588 ENSG00000225269 OTTHUMG00000017575 uc001ihg.4 BC104742 NR_015425 12477932 +HGNC:44690 LINC00706 long intergenic non-protein coding RNA 706 non-coding RNA RNA, long non-coding Approved 10p14 10p14 2012-12-04 2012-12-04 100652997 ENSG00000281186 OTTHUMG00000189562 uc031vwd.2 "DA137858|DB484295" NR_108074 +HGNC:44691 LINC00707 long intergenic non-protein coding RNA 707 non-coding RNA RNA, long non-coding Approved 10p14 10p14 2012-12-04 2014-10-22 100507127 ENSG00000238266 OTTHUMG00000017627 uc001ijm.3 NR_038291 +HGNC:44694 LINC00708 long intergenic non-protein coding RNA 708 non-coding RNA RNA, long non-coding Approved 10p14 10p14 2012-12-04 2013-05-31 100507143 ENSG00000232170 OTTHUMG00000017645 uc001ikb.4 BC031880 NR_108058 +HGNC:44700 LINC00709 long intergenic non-protein coding RNA 709 non-coding RNA RNA, long non-coding Approved 10p14 10p14 2012-12-04 2012-12-04 100507163 ENSG00000230014 OTTHUMG00000017652 uc031vwv.2 "AI761698|BX111793|CR737742" NR_108039 +HGNC:27386 LINC00710 long intergenic non-protein coding RNA 710 non-coding RNA RNA, long non-coding Approved 10p14 10p14 2012-12-05 2014-11-19 254312 ENSG00000229240 OTTHUMG00000017661 uc057rqj.1 NR_015413 +HGNC:50281 LINC00824 long intergenic non-protein coding RNA 824 non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 LINC01263 long intergenic non-protein coding RNA 1263 2014-03-27 2014-06-26 2014-06-26 2014-06-26 101927774 ENSG00000254275 OTTHUMG00000165050 BC009730 NR_121673 +HGNC:44915 LINC00836 long intergenic non-protein coding RNA 836 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 2012-12-18 2014-01-30 101929052 ENSG00000280809 OTTHUMG00000189579 uc001isl.1 "W37259|BX100192" NR_108067 +HGNC:27436 LINC00837 long intergenic non-protein coding RNA 837 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 2012-12-19 2014-11-19 100507605 ENSG00000235824 OTTHUMG00000017876 uc001iuk.3 NR_038374 +HGNC:44963 LINC00838 long intergenic non-protein coding RNA 838 non-coding RNA RNA, long non-coding Approved 10p11.22 10p11.22 2012-12-20 2012-12-20 100505583 ENSG00000261683 OTTHUMG00000176162 uc001ixd.4 BC042457 NR_038932 +HGNC:28269 LINC00839 long intergenic non-protein coding RNA 839 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 2012-12-20 2015-01-22 84856 ENSG00000185904 OTTHUMG00000018010 uc001izy.4 NR_026827 12477932 +HGNC:44987 LINC00840 long intergenic non-protein coding RNA 840 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 2013-01-03 2013-01-03 100506835 ENSG00000226808 OTTHUMG00000018049 uc021ppj.1 NR_038268 +HGNC:27430 LINC00841 long intergenic non-protein coding RNA 841 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 2013-01-03 2014-11-19 283033 ENSG00000233395 OTTHUMG00000018053 uc001jbe.1 AK093142 NR_136147 +HGNC:44989 LINC00842 long intergenic non-protein coding RNA 842 non-coding RNA RNA, long non-coding Approved 10q11.22 10q11.22 2013-01-04 2015-01-30 643650 NR_033957 +HGNC:45009 LINC00843 long intergenic non-protein coding RNA 843 non-coding RNA RNA, long non-coding Approved 10q11.23 10q11.23 2013-01-07 2014-02-26 102902672 ENSG00000178440 OTTHUMG00000018218 uc057tfo.1 BC035067 +HGNC:45031 LINC00844 long intergenic non-protein coding RNA 844 non-coding RNA RNA, long non-coding Approved 10q21.1 10q21.1 2013-01-08 2013-01-08 100507008 ENSG00000237949 OTTHUMG00000018273 uc031wic.2 "BG618474|AB060916|AI572833" NR_108046 +HGNC:45033 LINC00845 long intergenic non-protein coding RNA 845 non-coding RNA RNA, long non-coding Approved 10q21.2 10q21.2 2013-01-08 2013-01-08 100507058 ENSG00000227244 OTTHUMG00000018291 uc031wil.2 "BX105353|AI792470" NR_108052 +HGNC:16080 LINC00846 long intergenic non-protein coding RNA 846 other unknown Approved 21q22.11 21q22.11 FLJ10932 C21orf77 chromosome 21 open reading frame 77 2003-10-01 2013-01-15 2013-01-15 2015-07-31 ENSG00000186842 OTTHUMG00000190260 uc061zns.1 AK001794 Q9NV44 +HGNC:45050 LINC00847 long intergenic non-protein coding RNA 847 non-coding RNA RNA, long non-coding Approved 5q35.3 05q35.3 2013-01-31 2013-01-31 729678 ENSG00000245060 OTTHUMG00000162270 uc063kvk.1 AK095170 NR_027183 +HGNC:45077 LINC00849 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-08-12 +HGNC:45092 LINC00850 long intergenic non-protein coding RNA 850 non-coding RNA RNA, long non-coding Approved Xq28 Xq28 KUCG1 Long non-coding RNAs 788 2013-02-11 2014-07-18 101241891 ENSG00000280752 OTTHUMG00000189730 uc033ezx.1 JX283354 NR_109813 23223008 300892 +HGNC:43424 LINC00851 long intergenic non-protein coding RNA 851 non-coding RNA RNA, long non-coding Approved 20p11.23 20p11.23 DZANK1-AS1 "DZANK1 antisense RNA 1 (non-protein coding)|DZANK1 antisense RNA 1 (tail to tail)" 2011-10-07 2013-02-13 2013-02-13 2013-02-13 440757 ENSG00000237282 OTTHUMG00000057443 uc021wbc.2 NR_034167 +HGNC:29904 LINC00852 long intergenic non-protein coding RNA 852 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 "NAG73|GHRL-AS2" GHRL antisense RNA 2 (non-protein coding) "C3orf42|GHRLOS2" "chromosome 3 open reading frame 42|ghrelin opposite strand/antisense RNA 2 (tail to tail)" 2006-01-10 2013-02-13 2013-02-13 2014-11-19 84657 ENSG00000231177 OTTHUMG00000155362 uc010hcz.3 AF280797 NR_026829 12477932 +HGNC:43716 LINC00853 long intergenic non-protein coding RNA 853 non-coding RNA RNA, long non-coding Approved 1p33 01p33 ncRNA-a4 PDZK1IP1-AS1 "PDZK1IP1 antisense RNA 1 (non-protein coding)|PDZK1IP1 antisense RNA 1 (tail to tail)" Long non-coding RNAs 788 2012-02-02 2013-02-13 2013-02-13 2014-10-22 100874253 ENSG00000224805 OTTHUMG00000007850 uc031pmn.1 AI792909 NR_047498 20887892 PDZK1IP1-AS1 +HGNC:43658 LINC00854 long intergenic non-protein coding RNA 854 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 TMEM106A-AS1 "TMEM106A antisense RNA 1 (non-protein coding)|TMEM106A antisense RNA 1|TMEM106A antisense RNA 1 (tail to tail)" 2012-01-23 2013-02-13 2013-02-13 2013-02-13 100874261 ENSG00000236383 OTTHUMG00000132641 uc060fso.1 NR_047479 22196729 +HGNC:45111 LINC00856 long intergenic non-protein coding RNA 856 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2013-02-15 2013-02-15 100132987 ENSG00000230417 OTTHUMG00000018555 uc284mwf.1 NR_038985 +HGNC:45114 LINC00857 long intergenic non-protein coding RNA 857 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2013-02-15 2013-02-15 439990 ENSG00000237523 OTTHUMG00000018605 uc001kbv.3 NR_038464 +HGNC:27276 LINC00858 long intergenic non-protein coding RNA 858 non-coding RNA RNA, long non-coding Approved 10q23.1 10q23.1 2013-02-15 2014-11-19 170425 ENSG00000229404 OTTHUMG00000018638 uc001kdf.1 NR_038220 +HGNC:45133 LINC00861 long intergenic non-protein coding RNA 861 non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 2013-02-22 2013-02-22 100130231 ENSG00000245164 OTTHUMG00000165025 uc022bbb.2 NR_038446 +HGNC:21901 LINC00862 long intergenic non-protein coding RNA 862 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 "C1orf98|SMIM16" "chromosome 1 open reading frame 98|small integral membrane protein 16" 2005-05-31 2013-02-22 2013-02-22 2014-11-19 554279 ENSG00000203721 OTTHUMG00000035722 uc001gvd.1 BC040731 NR_040064 A6NCI5 +HGNC:45162 LINC00863 long intergenic non-protein coding RNA 863 non-coding RNA RNA, long non-coding Approved 10q23.2 10q23.2 2013-02-28 2016-08-22 439994 ENSG00000224914 OTTHUMG00000018673 uc021pvt.2 BC082979 NR_135292 +HGNC:45163 LINC00864 long intergenic non-protein coding RNA 864 non-coding RNA RNA, long non-coding Approved 10q23.2 10q23.2 2013-02-28 2013-02-28 728218 ENSG00000228055 OTTHUMG00000018674 uc001ket.2 NR_046091 +HGNC:45170 LINC00865 long intergenic non-protein coding RNA 865 non-coding RNA RNA, long non-coding Approved 10q23.31 10q23.31 2013-03-01 2013-03-01 643529 ENSG00000232229 OTTHUMG00000018726 uc001kgv.3 NR_038382 +HGNC:45232 LINC00866 long intergenic non-protein coding RNA 866 non-coding RNA RNA, long non-coding Approved 10q24.2 10q24.2 2013-03-07 2013-03-07 100505561 ENSG00000227356 OTTHUMG00000018868 uc031wqj.1 "BM126639|CK818728|CK906088" NR_108035 +HGNC:45265 LINC00867 long intergenic non-protein coding RNA 867 non-coding RNA RNA, long non-coding Approved 10q26.11 10q26.11 2013-03-12 2013-03-12 100506126 ENSG00000232139 OTTHUMG00000019132 uc057wgw.1 "AI733769|AA121564" NR_108045 +HGNC:27562 LINC00868 long intergenic non-protein coding RNA 868 non-coding RNA RNA, long non-coding Approved 17q25.2 17q25.2 C17orf52 chromosome 17 open reading frame 52 2005-12-14 2013-03-14 2013-03-14 2013-03-14 283994 ENSG00000267535 OTTHUMG00000177703 uc060knr.1 BC038218 NR_135284 12477932 +HGNC:29050 LINC00869 long intergenic non-protein coding RNA 869 non-coding RNA RNA, long non-coding Approved 1q21.2 01q21.2 KIAA0493 2005-10-04 2013-03-15 2013-03-15 2016-10-05 57234 ENSG00000277147 OTTHUMG00000182426 uc031uxj.2 AB007962 NR_046135 P0C866 9455484 +HGNC:27319 LINC00870 long intergenic non-protein coding RNA 870 non-coding RNA RNA, long non-coding Approved 3p13 03p13 2013-04-04 2013-04-04 201617 ENSG00000243083 OTTHUMG00000159724 uc003dpd.3 NR_038221 +HGNC:47038 LINC00871 long intergenic non-protein coding RNA 871 non-coding RNA RNA, long non-coding Approved 14q21.2 14q21.2 RP11-1A16.1 2013-04-12 2013-07-05 100506412 ENSG00000258700 OTTHUMG00000170871 uc059bek.1 BG186771 NR_102700 +HGNC:27706 LINC00877 long intergenic non-protein coding RNA 877 non-coding RNA RNA, long non-coding Approved 3p13 03p13 2013-05-15 2014-11-19 285286 ENSG00000241163 OTTHUMG00000158784 AK097190 NR_104116 +HGNC:48566 LINC00879 long intergenic non-protein coding RNA 879 non-coding RNA RNA, long non-coding Approved 3q11.2 03q11.2 2013-05-17 2013-05-17 255025 ENSG00000239589 OTTHUMG00000159021 NR_015400 +HGNC:27948 LINC00880 long intergenic non-protein coding RNA 880 non-coding RNA RNA, long non-coding Approved 3q25.31 03q25.31 2013-05-17 2013-05-17 339894 ENSG00000243629 OTTHUMG00000158717 "BC038760|BC040669" NR_034007 12477932 +HGNC:48567 LINC00881 long intergenic non-protein coding RNA 881 non-coding RNA RNA, long non-coding Approved 3q25.31 03q25.31 2013-05-17 2013-05-17 100498859 ENSG00000241135 OTTHUMG00000158712 NR_034008 +HGNC:48568 LINC00882 long intergenic non-protein coding RNA 882 non-coding RNA RNA, long non-coding Approved 3q13.12 03q13.12 2013-05-17 2014-06-03 100302640 ENSG00000242759 OTTHUMG00000159196 NR_028303 24886442 +HGNC:48570 LINC00884 long intergenic non-protein coding RNA 884 non-coding RNA RNA, long non-coding Approved 3q29 03q29 2013-05-17 2013-05-17 401106 ENSG00000233058 OTTHUMG00000156037 NR_033929 +HGNC:48571 LINC00885 long intergenic non-protein coding RNA 885 non-coding RNA RNA, long non-coding Approved 3q29 03q29 2013-05-17 2013-05-17 401109 ENSG00000224652 OTTHUMG00000155713 NR_034088 +HGNC:48572 LINC00886 long intergenic non-protein coding RNA 886 non-coding RNA RNA, long non-coding Approved 3q25.31 03q25.31 2013-05-17 2013-05-17 730091 ENSG00000240875 OTTHUMG00000158647 NR_038387 +HGNC:48574 LINC00887 long intergenic non-protein coding RNA 887 non-coding RNA RNA, long non-coding Approved 3q29 03q29 linc-ATP13A4-8 2013-05-17 2015-11-04 100131551 ENSG00000214145 OTTHUMG00000155982 NR_024480 26400545 +HGNC:48575 LINC00888 long intergenic non-protein coding RNA 888 non-coding RNA RNA, long non-coding Approved 3q27.1 03q27.1 2013-05-17 2015-10-28 100505687 ENSG00000240024 OTTHUMG00000158437 AK057000 NR_038301 +HGNC:26410 LINC00889 long intergenic non-protein coding RNA 889 non-coding RNA RNA, long non-coding Approved Xq26.3 Xq26.3 FLJ30672 2013-05-17 2013-05-17 158696 "AK055234|DA392242" NR_026935 +HGNC:48576 LINC00890 long intergenic non-protein coding RNA 890 non-coding RNA RNA, long non-coding Approved Xq23 Xq23 2013-05-17 2013-05-17 401613 ENSG00000260802 OTTHUMG00000173027 NR_033974 RGD:7673510 +HGNC:48577 LINC00891 long intergenic non-protein coding RNA 891 non-coding RNA RNA, long non-coding Approved Xq13.1 Xq13.1 FLJ46446 2013-05-17 2013-05-17 441501 ENSG00000281852 OTTHUMG00000189559 BX276092 NR_034005 +HGNC:48578 LINC00892 long intergenic non-protein coding RNA 892 non-coding RNA RNA, long non-coding Approved Xq26.3 Xq26.3 2013-05-17 2013-05-17 100128420 ENSG00000233093 OTTHUMG00000022511 NR_038461 +HGNC:44265 LINC00893 long intergenic non-protein coding RNA 893 non-coding RNA RNA, long non-coding Approved Xq28 Xq28 gene W 2013-05-17 2013-05-17 100131434 ENSG00000241769 OTTHUMG00000022617 "AK124040|AF050144" NR_027455 10737977 +HGNC:48579 LINC00894 long intergenic non-protein coding RNA 894 non-coding RNA RNA, long non-coding Approved Xq28 Xq28 2013-05-17 2013-05-17 100272228 ENSG00000235703 OTTHUMG00000022638 NR_027456 +HGNC:48580 LINC00895 long intergenic non-protein coding RNA 895 non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 2013-05-17 2013-05-17 150185 ENSG00000281548 OTTHUMG00000189517 "AK057431|BC104250" NR_024381 +HGNC:26519 LINC00896 long intergenic non-protein coding RNA 896 non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 FLJ32575 2013-05-17 2013-05-17 150197 ENSG00000236499 OTTHUMG00000186112 AK057137 NR_026919 +HGNC:48581 LINC00898 long intergenic non-protein coding RNA 898 non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 2013-05-17 2013-05-17 400932 ENSG00000205634 OTTHUMG00000150323 NR_033377 +HGNC:48583 LINC00899 long intergenic non-protein coding RNA 899 non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 2013-05-17 2013-05-17 100271722 ENSG00000231711 OTTHUMG00000150406 NR_027036 +HGNC:27444 LINC00900 long intergenic non-protein coding RNA 900 non-coding RNA RNA, long non-coding Approved 11q23.3 11q23.3 2013-05-17 2013-05-17 283143 ENSG00000246100 OTTHUMG00000168216 NR_034148 +HGNC:40352 LINC00901 long intergenic non-protein coding RNA 901 non-coding RNA RNA, long non-coding Approved 3q13.31 03q13.31 "TCONS_00005428|BC040587" LSAMP-AS4 LSAMP antisense RNA 4 2011-07-27 2013-05-21 2013-05-21 2015-01-23 100506724 ENSG00000242385 OTTHUMG00000159347 "BI464214|BC040587" NR_121607 25435812 +HGNC:40351 LINC00903 long intergenic non-protein coding RNA 903 non-coding RNA RNA, long non-coding Approved 3q13.31 03q13.31 LSAMP-AS2 LSAMP antisense RNA 2 2011-07-27 2013-05-21 2013-05-21 2014-11-19 100861506 ENSG00000241397 OTTHUMG00000159325 DB446734 +HGNC:44325 LINC00904 long intergenic non-protein coding RNA 904 non-coding RNA RNA, long non-coding Approved 19q13.11 19q13.11 2013-05-21 2013-05-21 100652909 ENSG00000271649 BX091932 NR_046222 +HGNC:26334 LINC00905 long intergenic non-protein coding RNA 905 non-coding RNA RNA, long non-coding Approved 19p13.12 19p13.12 FLJ25328 2013-05-21 2015-08-26 148231 ENSG00000167459 OTTHUMG00000186020 "BC031284|BC069223|DB461577" NR_024335 +HGNC:27121 LINC00906 long intergenic non-protein coding RNA 906 non-coding RNA RNA, long non-coding Approved 19q12 19q12 2013-05-21 2013-05-21 148145 ENSG00000267339 OTTHUMG00000181995 "BX647231|BC039341" NR_027318 +HGNC:44327 LINC00907 long intergenic non-protein coding RNA 907 non-coding RNA RNA, long non-coding Approved 18q12.3 18q12.3 2013-05-21 2013-05-21 284260 ENSG00000267586 OTTHUMG00000178321 "BC021928|BC040725|BC011527" NR_046174 +HGNC:27599 LINC00908 long intergenic non-protein coding RNA 908 non-coding RNA RNA, long non-coding Approved 18q23 18q23 2013-05-21 2016-09-26 284276 ENSG00000263812 OTTHUMG00000179141 "AK093936|BC035336|BC121150" NR_015417 +HGNC:44331 LINC00909 long intergenic non-protein coding RNA 909 non-coding RNA RNA, long non-coding Approved 18q22.3 18q22.3 2013-05-21 2013-05-21 400657 ENSG00000264247 OTTHUMG00000179121 NR_024484 +HGNC:44361 LINC00910 long intergenic non-protein coding RNA 910 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 2013-05-21 2013-05-21 100130581 ENSG00000188825 OTTHUMG00000180880 BC035366 NR_027412 +HGNC:48596 LINC00911 long intergenic non-protein coding RNA 911 non-coding RNA RNA, long non-coding Approved 14q31.3 14q31.3 2013-05-21 2013-05-21 100996280 ENSG00000259107 OTTHUMG00000171369 "AA905171|AK131026" NR_102737 +HGNC:48604 LINC00914 long intergenic non-protein coding RNA 914 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 RAGE RNA for advanced-glycation end products 2013-05-24 2013-05-24 101669765 HF678991 +HGNC:48607 LINC00917 long intergenic non-protein coding RNA 917 non-coding RNA RNA, long non-coding Approved 16q24.1 16q24.1 2013-05-24 2013-05-24 732275 ENSG00000168367 OTTHUMG00000183867 NR_024406 +HGNC:48610 LINC00919 long intergenic non-protein coding RNA 919 non-coding RNA RNA, long non-coding Approved 16q12.1 16q12.1 2013-05-24 2013-05-24 100505619 ENSG00000260268 OTTHUMG00000173235 AK098676 NR_038233 +HGNC:48611 LINC00920 long intergenic non-protein coding RNA 920 non-coding RNA RNA, long non-coding Approved 16q21 16q21 2013-05-24 2013-05-24 100505865 ENSG00000246898 OTTHUMG00000175510 "AW015153|DA813001" NR_046242 +HGNC:26830 LINC00921 long intergenic non-protein coding RNA 921 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 FLJ39639 2013-05-24 2013-05-24 283876 ENSG00000281005 OTTHUMG00000189522 "AK096958|DA532447" NR_033904 +HGNC:27545 LINC00922 long intergenic non-protein coding RNA 922 non-coding RNA RNA, long non-coding Approved 16q21 16q21 2013-05-24 2013-05-24 283867 ENSG00000261742 OTTHUMG00000172812 "BC037902|BC104446" NR_027755 +HGNC:28088 LINC00923 long intergenic non-protein coding RNA 923 non-coding RNA RNA, long non-coding Approved 15q26.2 15q26.2 2013-05-24 2016-09-26 91948 ENSG00000251209 OTTHUMG00000172044 "AK025311|BC105717" NR_024172 +HGNC:27081 LINC00924 long intergenic non-protein coding RNA 924 non-coding RNA RNA, long non-coding Approved 15q26.2 15q26.2 2013-05-24 2013-05-24 145820 ENSG00000259134 OTTHUMG00000171819 NR_027132 +HGNC:27514 LINC00926 long intergenic non-protein coding RNA 926 non-coding RNA RNA, long non-coding Approved 15q21.3 15q21.3 2013-05-24 2013-05-24 283663 ENSG00000247982 OTTHUMG00000172641 NR_024433 +HGNC:27522 LINC00927 long intergenic non-protein coding RNA 927 non-coding RNA RNA, long non-coding Approved 15q25.1 15q25.1 2013-05-24 2013-05-24 283688 ENSG00000259361 OTTHUMG00000172168 NR_033833 +HGNC:27535 LINC00928 long intergenic non-protein coding RNA 928 non-coding RNA RNA, long non-coding Approved 15q26.1 15q26.1 2013-05-24 2013-05-24 283761 ENSG00000259218 OTTHUMG00000172014 NR_027074 +HGNC:48615 LINC00929 long intergenic non-protein coding RNA 929 non-coding RNA RNA, long non-coding Approved 15q12 15q12 2013-05-24 2013-05-24 503519 ENSG00000259150 OTTHUMG00000171722 NR_038851 +HGNC:48620 LINC00930 long intergenic non-protein coding RNA 930 non-coding RNA RNA, long non-coding Approved 15q26.1 15q26.1 2013-05-24 2013-05-24 100144604 ENSG00000258647 OTTHUMG00000171742 NR_021493 +HGNC:48625 LINC00933 long intergenic non-protein coding RNA 933 non-coding RNA RNA, long non-coding Approved 15q25.2 15q25.2 2013-05-29 2013-05-29 100506874 ENSG00000259728 OTTHUMG00000172445 NR_038273 +HGNC:27059 LINC00934 long intergenic non-protein coding RNA 934 non-coding RNA RNA, long non-coding Approved 12q24.23 12q24.23 2013-05-30 2013-05-30 144742 ENSG00000281196 OTTHUMG00000189518 AK057497 NR_024246 +HGNC:48628 LINC00935 long intergenic non-protein coding RNA 935 non-coding RNA RNA, long non-coding Approved 12q13.12 12q13.12 2013-05-30 2013-05-30 255411 ENSG00000257987 OTTHUMG00000170394 "AK131005|BC054859" NR_029448 RGD:1305928 +HGNC:27883 LINC00936 long intergenic non-protein coding RNA 936 non-coding RNA RNA, long non-coding Approved 12q21.33 12q21.33 2013-05-30 2013-05-30 338758 ENSG00000271614 OTTHUMG00000169947 NR_028138 12477932 +HGNC:48629 LINC00937 long intergenic non-protein coding RNA 937 non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 2013-05-30 2013-05-30 389634 ENSG00000226091 OTTHUMG00000168663 BC073935 NR_024420 +HGNC:48630 LINC00938 long intergenic non-protein coding RNA 938 non-coding RNA RNA, long non-coding Approved 12q12 12q12 2013-05-30 2013-05-30 400027 NR_028408 +HGNC:48631 LINC00939 long intergenic non-protein coding RNA 939 non-coding RNA RNA, long non-coding Approved 12q24.32 12q24.32 2013-05-30 2013-05-30 400084 ENSG00000249267 OTTHUMG00000168492 NR_034132 +HGNC:48634 LINC00940 long intergenic non-protein coding RNA 940 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 2013-05-30 2013-05-30 100271702 ENSG00000235049 OTTHUMG00000168112 "AK316036|DA269488" NR_036546 +HGNC:48635 LINC00941 long intergenic non-protein coding RNA 941 non-coding RNA RNA, long non-coding Approved 12p11.21 12p11.21 2013-05-30 2013-05-30 100287314 ENSG00000235884 OTTHUMG00000169309 "AK289874|BC072678" NR_040245 +HGNC:48636 LINC00942 long intergenic non-protein coding RNA 942 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 2013-05-30 2013-05-30 100292680 ENSG00000249628 OTTHUMG00000168151 "AK090616|BG332174|BQ942184" NR_028415 +HGNC:48639 LINC00943 long intergenic non-protein coding RNA 943 non-coding RNA RNA, long non-coding Approved 12q24.32 12q24.32 2013-05-30 2013-05-30 100507206 ENSG00000189238 OTTHUMG00000168479 NR_038256 +HGNC:48640 LINC00944 long intergenic non-protein coding RNA 944 non-coding RNA RNA, long non-coding Approved 12q24.32 12q24.32 2013-05-30 2013-05-30 387895 ENSG00000256128 OTTHUMG00000168480 "BC040060|DA048939" NR_033878 +HGNC:48643 LINC00945 long intergenic non-protein coding RNA 945 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 TCONS_00028834 2013-05-21 2013-05-31 101930746 ENSG00000232539 OTTHUMG00000065060 BF204217 NR_104056 +HGNC:28098 LINC00950 long intergenic non-protein coding RNA 950 non-coding RNA RNA, long non-coding Approved 9p13.3 09p13.3 FP588 2013-06-04 2013-06-04 92973 ENSG00000281205 OTTHUMG00000189506 AF370382 NR_024006 "8619474|9110174" +HGNC:48662 LINC00951 long intergenic non-protein coding RNA 951 non-coding RNA RNA, long non-coding Approved 6p21.2 06p21.2 "lincRNA-uc003opf.1|FLJ41649" 2013-06-04 2013-07-23 401260 ENSG00000204092 OTTHUMG00000014658 "AK123643|BC132805" NR_038887 23872665 +HGNC:48668 LINC00954 long intergenic non-protein coding RNA 954 non-coding RNA RNA, long non-coding Approved 2p24.1 02p24.1 FLJ12334 2013-06-04 2013-06-04 400946 ENSG00000228784 OTTHUMG00000151773 "BC068572|DB155534" NR_033875 +HGNC:26644 LINC00955 long intergenic non-protein coding RNA 955 non-coding RNA RNA, long non-coding Approved 4p16.3 04p16.3 FLJ35424 2013-06-04 2014-10-07 285492 ENSG00000216560 OTTHUMG00000159817 AK092743 NR_040045 +HGNC:22332 LINC00957 long intergenic non-protein coding RNA 957 non-coding RNA RNA, long non-coding Approved 7p13 07p13 2013-06-04 2014-11-19 255031 ENSG00000235314 OTTHUMG00000155351 BC014556 NR_015401 +HGNC:48671 LINC00958 long intergenic non-protein coding RNA 958 non-coding RNA RNA, long non-coding Approved 11p15.3 11p15.3 2013-06-06 2016-10-05 100506305 ENSG00000251381 OTTHUMG00000165904 AK001432 NR_038904 +HGNC:48677 LINC00959 long intergenic non-protein coding RNA 959 non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 2013-06-06 2013-06-06 387723 ENSG00000237489 OTTHUMG00000019268 NR_034125 RGD:2318344 +HGNC:48710 LINC00960 long intergenic non-protein coding RNA 960 non-coding RNA RNA, long non-coding Approved 3p12.3 03p12.3 2013-06-06 2013-06-06 401074 ENSG00000242516 OTTHUMG00000158961 NR_040004 +HGNC:27244 LINC00961 long intergenic non-protein coding RNA 961 non-coding RNA RNA, long non-coding Approved 9p13.3 09p13.3 2013-06-07 2014-11-19 158376 ENSG00000235387 OTTHUMG00000019887 NR_024283 +HGNC:48716 LINC00963 long intergenic non-protein coding RNA 963 non-coding RNA RNA, long non-coding Approved 9q34.11 09q34.11 2013-06-07 2014-04-03 100506190 ENSG00000204054 OTTHUMG00000020783 NR_038955 24691949 +HGNC:27226 LINC00964 long intergenic non-protein coding RNA 964 non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 2013-06-07 2013-06-07 157381 ENSG00000249816 OTTHUMG00000165101 NR_027321 12477932 +HGNC:28022 LINC00965 long intergenic non-protein coding RNA 965 non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 2013-06-07 2013-06-07 349196 NR_027000 +HGNC:48725 LINC00967 long intergenic non-protein coding RNA 967 non-coding RNA RNA, long non-coding Approved 8q13.1 08q13.1 2013-06-07 2013-06-07 100505659 ENSG00000253138 OTTHUMG00000164475 NR_039979 +HGNC:48727 LINC00968 long intergenic non-protein coding RNA 968 non-coding RNA RNA, long non-coding Approved 8q12.1 08q12.1 2013-06-07 2013-06-07 100507632 ENSG00000246430 OTTHUMG00000164412 NR_038236 +HGNC:48729 LINC00969 long intergenic non-protein coding RNA 969 non-coding RNA RNA, long non-coding Approved 3q29 03q29 2013-06-07 2013-06-07 440993 ENSG00000242086 OTTHUMG00000155834 AK128346 NR_122105 +HGNC:48730 LINC00970 long intergenic non-protein coding RNA 970 non-coding RNA RNA, long non-coding Approved 1q24.2 01q24.2 2013-06-07 2013-06-07 101978719 ENSG00000203601 OTTHUMG00000034588 BC041008 NR_104091 23741487 +HGNC:48737 LINC00971 long intergenic non-protein coding RNA 971 non-coding RNA RNA, long non-coding Approved 3p12.1 03p12.1 2013-06-07 2013-06-07 440970 ENSG00000242641 OTTHUMG00000158981 NR_033860 +HGNC:48826 LINC00972 long intergenic non-protein coding RNA 972 non-coding RNA RNA, long non-coding Approved 7q21.11 07q21.11 2013-06-14 2016-02-08 105375380 ENSG00000225128 OTTHUMG00000154585 BG220912 NR_134240 +HGNC:48868 LINC00973 long intergenic non-protein coding RNA 973 non-coding RNA RNA, long non-coding Approved 3q12.1 03q12.1 CTD-2021J15.2 2013-06-19 2013-06-19 100506377 ENSG00000240476 OTTHUMG00000159060 +HGNC:27105 LINC00974 long intergenic non-protein coding RNA 974 non-coding RNA RNA, long non-coding Approved 17q21.2 17q21.2 2013-06-19 2015-01-23 147093 ENSG00000226629 OTTHUMG00000133607 NR_038442 25476897 +HGNC:50610 LINC00976 long intergenic non-protein coding RNA 976 non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 2014-05-27 2014-05-27 2014-05-27 2014-05-27 106144608 ENSG00000281657 OTTHUMG00000189736 "BF691581|BF691786" +HGNC:48902 LINC00977 long intergenic non-protein coding RNA 977 non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 2013-07-01 2014-06-26 2014-06-26 2014-06-26 728724 ENSG00000250400 OTTHUMG00000164846 NR_033916 +HGNC:48664 LINC00982 long intergenic non-protein coding RNA 982 non-coding RNA RNA, long non-coding Approved 1p36.32 01p36.32 FLJ42875 2013-07-01 2015-09-23 440556 ENSG00000177133 OTTHUMG00000000563 NR_015440 "23801869|26334618" +HGNC:48911 LINC00987 long intergenic non-protein coding RNA 987 non-coding RNA RNA, long non-coding Approved 12p13.31 12p13.31 2013-07-01 2013-07-04 100499405 ENSG00000237248 OTTHUMG00000168332 AK126248 NR_137433 +HGNC:48918 LINC00989 long intergenic non-protein coding RNA 989 non-coding RNA RNA, long non-coding Approved 4q21.21 04q21.21 2013-07-05 2013-07-05 100506035 ENSG00000250334 OTTHUMG00000160884 BC047610 NR_038826 +HGNC:48943 LINC00992 long intergenic non-protein coding RNA 992 non-coding RNA RNA, long non-coding Approved 5q23.1 05q23.1 2013-07-18 2013-07-18 728342 ENSG00000248663 OTTHUMG00000162885 BC045192 NR_046089 +HGNC:48948 LINC00993 long intergenic non-protein coding RNA 993 non-coding RNA RNA, long non-coding Approved 10p11.21 10p11.21 2013-07-14 2014-01-06 101929520 ENSG00000235687 OTTHUMG00000017971 H39762 NR_104061 +HGNC:48949 LINC00994 long intergenic non-protein coding RNA 994 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 2013-07-20 2013-07-23 100287879 ENSG00000189196 OTTHUMG00000158790 NR_033978 +HGNC:27800 LINC00996 long intergenic non-protein coding RNA 996 non-coding RNA RNA, long non-coding Approved 7q36.1 07q36.1 2013-07-23 2014-11-18 285972 ENSG00000242258 OTTHUMG00000158321 NR_034033 12477932 +HGNC:48952 LINC00997 long intergenic non-protein coding RNA 997 non-coding RNA RNA, long non-coding Approved 7p14.3 07p14.3 2013-07-23 2013-07-23 401321 ENSG00000281332 OTTHUMG00000189740 AK127989 NR_036501 +HGNC:48953 LINC00998 long intergenic non-protein coding RNA 998 non-coding RNA RNA, long non-coding Approved 7q31.1 07q31.1 2013-07-23 2014-10-07 401397 ENSG00000214194 OTTHUMG00000154780 BC107860 NR_024412 A4D0T7 +HGNC:38537 LINC00999 long intergenic non-protein coding RNA 999 non-coding RNA RNA, long non-coding Approved 10p11.1 10p11.1 FLJ44672 2013-07-23 2015-01-29 399744 AK128746 NR_024497 +HGNC:38541 LINC01000 long intergenic non-protein coding RNA 1000 non-coding RNA RNA, long non-coding Approved 7q32.1 07q32.1 FLJ45340 2013-07-23 2013-07-23 402483 NR_024368 +HGNC:38540 LINC01001 long intergenic non-protein coding RNA 1001 non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 2013-07-23 2013-07-23 100133161 ENSG00000230724 OTTHUMG00000165114 NR_028326 +HGNC:38538 LINC01002 long intergenic non-protein coding RNA 1002 non-coding RNA RNA, long non-coding Approved 19p13.3 19p13.3 2013-07-23 2015-07-24 399844 ENSG00000282508 OTTHUMG00000188608 NR_028324 +HGNC:48957 LINC01003 long intergenic non-protein coding RNA 1003 non-coding RNA RNA, long non-coding Approved 7q36.1 07q36.1 2013-07-23 2013-07-23 100128822 ENSG00000261455 OTTHUMG00000173415 BC036622 NR_027387 +HGNC:48961 LINC01004 long intergenic non-protein coding RNA 1004 non-coding RNA RNA, long non-coding Approved 7q22.3 07q22.3 2013-07-23 2013-07-23 100216546 ENSG00000228393 OTTHUMG00000157278 NR_039981 +HGNC:48963 LINC01005 long intergenic non-protein coding RNA 1005 non-coding RNA RNA, long non-coding Approved 7q11.21 07q11.21 2013-07-23 2013-07-23 100506050 ENSG00000228564 OTTHUMG00000156482 NR_039987 +HGNC:48971 LINC01006 long intergenic non-protein coding RNA 1006 non-coding RNA RNA, long non-coding Approved 7q36.3 07q36.3 MY040 C7orf13 chromosome 7 open reading frame 13 2013-07-23 2015-02-05 100506380 ENSG00000182648 OTTHUMG00000157237 NR_103858 Q8NI28 +HGNC:48973 LINC01007 long intergenic non-protein coding RNA 1007 non-coding RNA RNA, long non-coding Approved 7q22.1 07q22.1 2013-07-23 2013-07-23 100506527 ENSG00000233123 OTTHUMG00000157139 NR_103747 +HGNC:48978 LINC01010 long intergenic non-protein coding RNA 1010 non-coding RNA RNA, long non-coding Approved 6q23.2 06q23.2 2013-07-24 2013-07-24 154092 ENSG00000236700 OTTHUMG00000015616 NR_038216 +HGNC:33812 LINC01011 long intergenic non-protein coding RNA 1011 non-coding RNA RNA, long non-coding Approved 6p25.2 06p25.2 DKFZp686I15217 2013-07-24 2014-11-18 401232 ENSG00000244041 OTTHUMG00000014128 NR_026856 +HGNC:48986 LINC01012 long intergenic non-protein coding RNA 1012 non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 2013-07-24 2013-07-24 100507173 ENSG00000281706 OTTHUMG00000189539 BC035101 NR_038292 +HGNC:48987 LINC01013 long intergenic non-protein coding RNA 1013 non-coding RNA RNA, long non-coding Approved 6q23.2 06q23.2 2013-07-25 2013-07-25 100507254 ENSG00000228495 OTTHUMG00000015574 NR_038981 +HGNC:41353 LINC01014 long intergenic non-protein coding RNA 1014 non-coding RNA RNA, long non-coding Approved 3q26.32 03q26.32 KCNMB2-IT1 KCNMB2 intronic transcript 1 (non-protein coding) 2011-05-23 2013-07-25 2013-07-25 2014-11-18 100874330 ENSG00000223941 OTTHUMG00000157288 BX105665 NR_046786 +HGNC:48988 LINC01015 long intergenic non-protein coding RNA 1015 non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 2013-07-25 2013-07-25 100507362 ENSG00000224582 OTTHUMG00000065812 NR_037179 +HGNC:48991 LINC01016 long intergenic non-protein coding RNA 1016 non-coding RNA RNA, long non-coding Approved 6p21.31 06p21.31 2013-07-25 2015-11-05 100507584 ENSG00000249346 OTTHUMG00000166297 NR_038989 26426411 +HGNC:50641 LINC01017 long intergenic non-protein coding RNA 1017 non-coding RNA RNA, long non-coding Approved 5p15.33 05p15.33 2014-06-02 2014-06-02 102467075 ENSG00000250716 OTTHUMG00000161633 BQ428982 NR_104618 +HGNC:27394 LINC01018 long intergenic non-protein coding RNA 1018 non-coding RNA RNA, long non-coding Approved 5p15.31 05p15.31 2013-07-26 2013-07-26 255167 ENSG00000250056 OTTHUMG00000161680 NR_024423 12477932 616385 +HGNC:27742 LINC01019 long intergenic non-protein coding RNA 1019 non-coding RNA RNA, long non-coding Approved 5p15.33 05p15.33 2013-07-26 2013-07-26 285577 ENSG00000248118 OTTHUMG00000161629 NR_033898 12477932 +HGNC:27968 LINC01020 long intergenic non-protein coding RNA 1020 non-coding RNA RNA, long non-coding Approved 5p15.32 05p15.32 2013-07-26 2013-07-26 340094 ENSG00000215231 OTTHUMG00000161653 NR_026994 12477932 +HGNC:48995 LINC01021 long intergenic non-protein coding RNA 1021 non-coding RNA RNA, long non-coding Approved 5p14.1 05p14.1 2013-07-26 2013-07-26 643401 ENSG00000250337 OTTHUMG00000161968 NR_038848 +HGNC:48998 LINC01022 long intergenic non-protein coding RNA 1022 non-coding RNA RNA, long non-coding Approved 7q36.3 07q36.3 TCONS_00013107 2013-07-29 2013-07-29 105375616 ENSG00000232715 OTTHUMG00000152648 DB518621 NR_132379 +HGNC:49004 LINC01023 long intergenic non-protein coding RNA 1023 non-coding RNA RNA, long non-coding Approved 5q21.3 05q21.3 2013-07-30 2013-07-30 100652853 ENSG00000272523 BF972671 NR_046368 +HGNC:49009 LINC01024 long intergenic non-protein coding RNA 1024 non-coding RNA RNA, long non-coding Approved 5q31.2 05q31.2 MA-linc1 2013-07-30 2015-09-18 100505636 ENSG00000245146 OTTHUMG00000163537 NR_102739 26337085 +HGNC:49014 LINC01028 long intergenic non-protein coding RNA 1028 non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 TCONS_00025127 2013-08-08 2013-08-08 101928141 ENSG00000267603 OTTHUMG00000180348 BX647864 NR_104129 +HGNC:49015 LINC01029 long intergenic non-protein coding RNA 1029 non-coding RNA RNA, long non-coding Approved 18q23 18q23 2013-08-08 2013-08-08 101927715 ENSG00000265843 OTTHUMG00000179393 "BC016792|BF183892" NR_104127 +HGNC:49016 LINC01030 long intergenic non-protein coding RNA 1030 non-coding RNA RNA, long non-coding Approved 8q21.3 08q21.3 TCONS_00015085 2013-08-08 2013-08-08 2014-02-12 101937451 ENSG00000253799 OTTHUMG00000163970 BU568440 NR_104062 +HGNC:49017 LINC01031 long intergenic non-protein coding RNA 1031 non-coding RNA RNA, long non-coding Approved 1q31.2 01q31.2 TCONS_00000361 2013-08-08 2013-08-08 101929184 ENSG00000232077 OTTHUMG00000035686 BX100123 NR_125789 +HGNC:49018 LINC01032 long intergenic non-protein coding RNA 1032 non-coding RNA RNA, long non-coding Approved 1q31.2 01q31.2 2013-08-08 2013-08-08 102724954 ENSG00000234871 OTTHUMG00000041137 AW104394 NR_126003 +HGNC:49019 LINC01033 long intergenic non-protein coding RNA 1033 non-coding RNA RNA, long non-coding Approved 5q11.2 05q11.2 2013-08-08 2013-08-08 104355136 ENSG00000249069 OTTHUMG00000162286 BG181707 NR_126379 +HGNC:49021 LINC01034 long intergenic non-protein coding RNA 1034 non-coding RNA RNA, long non-coding Approved 13q22.2 13q22.2 TCONS_00021570 2013-08-08 2013-08-08 106144601 ENSG00000224933 OTTHUMG00000017095 BG183202 +HGNC:49022 LINC01035 long intergenic non-protein coding RNA 1035 non-coding RNA RNA, long non-coding Approved 1q31.1 01q31.1 2013-08-09 2013-08-09 106144592 ENSG00000226486 OTTHUMG00000035542 BQ212312 +HGNC:49024 LINC01036 long intergenic non-protein coding RNA 1036 non-coding RNA RNA, long non-coding Approved 1q31.1 01q31.1 2013-08-09 2013-08-09 104169671 ENSG00000236030 OTTHUMG00000035513 BU171718 NR_126347 +HGNC:49025 LINC01037 long intergenic non-protein coding RNA 1037 non-coding RNA RNA, long non-coding Approved 1q31.1 01q31.1 2013-08-09 2013-08-09 106144535 ENSG00000231599 OTTHUMG00000035479 BG182723 NR_132374 +HGNC:49026 LINC01038 long intergenic non-protein coding RNA 1038 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 2013-08-09 2013-08-09 102724076 ENSG00000229011 OTTHUMG00000017137 AI799053 NR_125785 +HGNC:49027 LINC01039 long intergenic non-protein coding RNA 1039 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 2013-08-09 2013-08-09 104355149 ENSG00000234168 OTTHUMG00000017273 BI464824 NR_126390 +HGNC:49028 LINC01040 long intergenic non-protein coding RNA 1040 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 TCONS_00021682 2013-08-13 2013-08-13 105370308 ENSG00000226037 OTTHUMG00000017177 BG192883 NR_131228 +HGNC:49031 LINC01043 long intergenic non-protein coding RNA 1043 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2013-08-13 2013-08-13 101928752 ENSG00000260343 OTTHUMG00000176083 BX649107 NR_135321 +HGNC:49032 LINC01044 long intergenic non-protein coding RNA 1044 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2013-08-13 2013-08-13 104266956 ENSG00000223626 OTTHUMG00000017366 BG722997 NR_126345 +HGNC:49040 LINC01046 long intergenic non-protein coding RNA 1046 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2013-08-15 2013-08-15 103689843 ENSG00000233405 OTTHUMG00000016533 AW117237 NR_125745 +HGNC:49041 LINC01047 long intergenic non-protein coding RNA 1047 non-coding RNA RNA, long non-coding Approved 13q31.2 13q31.2 2013-08-15 2013-08-15 105616982 ENSG00000232225 OTTHUMG00000017173 BG183515 NR_131229 +HGNC:49042 LINC01048 long intergenic non-protein coding RNA 1048 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 2013-08-15 2013-08-15 103695431 ENSG00000230390 OTTHUMG00000016750 BX091314 NR_125762 +HGNC:49043 LINC01049 long intergenic non-protein coding RNA 1049 non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 2013-08-15 2014-02-14 101927224 ENSG00000234384 OTTHUMG00000017184 BI825411 NR_120414 +HGNC:49044 LINC01050 long intergenic non-protein coding RNA 1050 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 2013-08-15 2013-08-15 103689845 ENSG00000271216 OTTHUMG00000184191 CD367180 NR_125747 +HGNC:49046 LINC01052 long intergenic non-protein coding RNA 1052 non-coding RNA RNA, long non-coding Approved 13q21.32 13q21.32 2013-08-15 2013-08-15 105370242 ENSG00000234767 OTTHUMG00000017032 AA889679 NR_132362 +HGNC:49047 LINC01053 long intergenic non-protein coding RNA 1053 non-coding RNA RNA, long non-coding Approved 13q12.13 13q12.13 2013-08-15 2014-06-17 102723318 ENSG00000238169 OTTHUMG00000016605 NR_120427 +HGNC:49048 LINC01054 long intergenic non-protein coding RNA 1054 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2013-08-15 2013-08-15 104355150 ENSG00000229723 OTTHUMG00000017405 BG460330 NR_126391 +HGNC:49049 LINC01055 long intergenic non-protein coding RNA 1055 non-coding RNA RNA, long non-coding Approved 13q14.13 13q14.13 2013-08-15 2013-08-15 103752581 ENSG00000235366 OTTHUMG00000016859 BG431110 NR_125786 +HGNC:49050 LINC01056 long intergenic non-protein coding RNA 1056 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 2013-08-16 2013-08-16 100144597 ENSG00000237119 OTTHUMG00000032954 BC038718 NR_033369 +HGNC:49057 LINC01057 long intergenic non-protein coding RNA 1057 non-coding RNA RNA, long non-coding Approved 1p21.3 01p21.3 2013-08-19 2015-08-24 101928079 ENSG00000224081 OTTHUMG00000010701 BC030750 NR_104131 +HGNC:49061 LINC01058 long intergenic non-protein coding RNA 1058 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2013-08-20 2013-08-20 103724387 ENSG00000225039 OTTHUMG00000055981 CF138692 NR_125771 +HGNC:49074 LINC01059 long intergenic non-protein coding RNA 1059 non-coding RNA RNA, long non-coding Approved 11q24.1 11q24.1 2013-08-22 2013-08-22 102031123 ENSG00000255414 OTTHUMG00000166003 "CR617890|CV373778" +HGNC:49081 LINC01060 long intergenic non-protein coding RNA 1060 non-coding RNA RNA, long non-coding Approved 4q35.2 04q35.2 2013-08-23 2013-08-23 401164 ENSG00000249378 OTTHUMG00000160242 NR_033869 +HGNC:49084 LINC01061 long intergenic non-protein coding RNA 1061 non-coding RNA RNA, long non-coding Approved 4q26 04q26 FLJ14186 2013-08-23 2013-08-23 401149 NR_037596 +HGNC:49092 LINC01063 long intergenic non-protein coding RNA 1063 non-coding RNA RNA, long non-coding Approved 3q29 03q29 2013-09-02 2013-09-02 101929769 ENSG00000232065 OTTHUMG00000155570 NR_132101 +HGNC:49103 LINC01065 long intergenic non-protein coding RNA 1065 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 2013-09-02 2013-09-02 102723875 ENSG00000237092 OTTHUMG00000016983 AW303400 NR_125788 +HGNC:49104 LINC01066 long intergenic non-protein coding RNA 1066 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 2013-09-02 2013-09-02 106144544 ENSG00000230403 OTTHUMG00000016684 AA644401 +HGNC:49105 LINC01067 long intergenic non-protein coding RNA 1067 non-coding RNA RNA, long non-coding Approved 13q33.3 13q33.3 2013-09-02 2013-09-02 107080624 ENSG00000236053 OTTHUMG00000017336 BF969615 +HGNC:49106 LINC01068 long intergenic non-protein coding RNA 1068 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 2013-09-02 2013-09-02 103724388 ENSG00000227676 OTTHUMG00000017135 AI138787 NR_125772 +HGNC:49109 LINC01069 long intergenic non-protein coding RNA 1069 non-coding RNA RNA, long non-coding Approved 13q22.3 13q22.3 2013-09-03 2013-09-03 101927176 ENSG00000236133 OTTHUMG00000017112 BI825933 NR_108076 +HGNC:49110 LINC01070 long intergenic non-protein coding RNA 1070 non-coding RNA RNA, long non-coding Approved 13q34 13q34 2013-09-03 2013-09-03 101928698 ENSG00000260102 OTTHUMG00000176078 CR627049 NR_108094 +HGNC:49112 LINC01072 long intergenic non-protein coding RNA 1072 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 2013-09-05 2013-09-05 104355137 ENSG00000236076 OTTHUMG00000016506 AI150015 NR_126380 +HGNC:49114 LINC01073 long intergenic non-protein coding RNA 1073 non-coding RNA RNA, long non-coding Approved 13q13.1 13q13.1 2013-09-05 2013-09-05 107080623 ENSG00000235822 OTTHUMG00000153574 DR731308 +HGNC:49117 LINC01074 long intergenic non-protein coding RNA 1074 non-coding RNA RNA, long non-coding Approved 13q21.31 13q21.31 2013-09-05 2013-09-05 106144607 ENSG00000227611 OTTHUMG00000017016 BF057195 +HGNC:49118 LINC01075 long intergenic non-protein coding RNA 1075 non-coding RNA RNA, long non-coding Approved 13q21.31 13q21.31 2013-09-05 2013-09-05 103752583 ENSG00000230142 OTTHUMG00000017017 AI028357 NR_125787 +HGNC:49119 LINC01076 long intergenic non-protein coding RNA 1076 non-coding RNA RNA, long non-coding Approved 13q12.13 13q12.13 2013-09-05 2013-09-05 106144602 ENSG00000225105 OTTHUMG00000016599 BG190398 +HGNC:49120 LINC01077 long intergenic non-protein coding RNA 1077 non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 2013-09-05 2013-09-05 107080621 ENSG00000233456 OTTHUMG00000016904 AI769787 +HGNC:49121 LINC01078 long intergenic non-protein coding RNA 1078 non-coding RNA RNA, long non-coding Approved 13q22.2 13q22.2 2013-09-05 2013-09-05 106144536 ENSG00000223880 OTTHUMG00000017086 AA442466 NR_132375 +HGNC:49122 LINC01079 long intergenic non-protein coding RNA 1079 non-coding RNA RNA, long non-coding Approved 13q12.2 13q12.2 2013-09-05 2013-09-05 106146146 ENSG00000229609 OTTHUMG00000016631 BM503984 +HGNC:49123 LINC01080 long intergenic non-protein coding RNA 1080 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 TCONS_00021856 Long non-coding RNAs 788 2013-09-05 2014-07-18 101515984 ENSG00000281721 OTTHUMG00000189563 DA225206 NR_104138 25019275 615230 +HGNC:49124 LINC01081 long intergenic non-protein coding RNA 1081 non-coding RNA RNA, long non-coding Approved 16q24.1 16q24.1 TCONS_00024764 2013-09-05 2014-05-21 101154687 "CR737045|HY035025" NR_104139 24842713 614977 +HGNC:49125 LINC01082 long intergenic non-protein coding RNA 1082 non-coding RNA RNA, long non-coding Approved 16q24.1 16q24.1 TCONS_00024492 2013-09-05 2013-09-05 100506542 ENSG00000269186 OTTHUMG00000183863 "AA399680|AI676062" NR_103859 614978 +HGNC:27198 LINC01085 long intergenic non-protein coding RNA 1085 non-coding RNA RNA, long non-coding Approved 4p15.33 04p15.33 2013-09-16 2013-09-16 152742 ENSG00000248698 OTTHUMG00000160101 AK055518 NR_033931 +HGNC:49144 LINC01087 long intergenic non-protein coding RNA 1087 non-coding RNA RNA, long non-coding Approved 2q21.1 02q21.1 2013-09-19 2013-09-19 101927994 ENSG00000224559 OTTHUMG00000153621 BC036114 NR_108087 +HGNC:49148 LINC01088 long intergenic non-protein coding RNA 1088 non-coding RNA RNA, long non-coding Approved 4q21.21 04q21.21 2013-09-19 2013-09-19 100505875 ENSG00000249307 OTTHUMG00000160858 NR_038342 +HGNC:27886 LINC01089 long intergenic non-protein coding RNA 1089 non-coding RNA RNA, long non-coding Approved 12q24.31 12q24.31 LIMT long non coding RNA inhibiting metastasis 2014-01-21 2016-08-25 338799 ENSG00000212694 OTTHUMG00000128905 BC038786 NR_002809 "26252651|27485121" +HGNC:49201 LINC01090 long intergenic non-protein coding RNA 1090 non-coding RNA RNA, long non-coding Approved 2q32.1 02q32.1 2013-10-07 2013-10-07 104355152 ENSG00000231689 OTTHUMG00000154285 DA863615 NR_126396 24080187 +HGNC:27721 LINC01091 long intergenic non-protein coding RNA 1091 non-coding RNA RNA, long non-coding Approved 4q28.1 04q28.1 2013-10-08 2013-10-08 285419 ENSG00000249464 OTTHUMG00000161162 BC053945 NR_027106 12477932 +HGNC:49218 LINC01093 long intergenic non-protein coding RNA 1093 non-coding RNA RNA, long non-coding Approved 4q35.1 04q35.1 2013-10-09 2013-10-09 100506229 ENSG00000249173 OTTHUMG00000160603 NR_039975 +HGNC:49219 LINC01094 long intergenic non-protein coding RNA 1094 non-coding RNA RNA, long non-coding Approved 4q21.21 04q21.21 2013-10-09 2013-10-09 100505702 ENSG00000251442 OTTHUMG00000160897 NR_038304 +HGNC:49220 LINC01095 long intergenic non-protein coding RNA 1095 non-coding RNA RNA, long non-coding Approved 4q31.22 04q31.22 2013-10-09 2013-10-09 100505545 ENSG00000248809 OTTHUMG00000161439 NR_038331 +HGNC:27739 LINC01096 long intergenic non-protein coding RNA 1096 non-coding RNA RNA, long non-coding Approved 4p15.33 04p15.33 2013-10-09 2013-10-09 285548 ENSG00000246095 OTTHUMG00000160090 NR_015450 12477932 +HGNC:27738 LINC01097 long intergenic non-protein coding RNA 1097 non-coding RNA RNA, long non-coding Approved 4p15.33 04p15.33 2013-10-09 2013-10-09 285547 ENSG00000281202 OTTHUMG00000189540 BC035722 NR_034054 +HGNC:27731 LINC01098 long intergenic non-protein coding RNA 1098 non-coding RNA RNA, long non-coding Approved 4q34.3 04q34.3 2013-10-09 2014-10-01 285501 ENSG00000231171 OTTHUMG00000160724 BC033326 NR_028342 +HGNC:49222 LINC01099 long intergenic non-protein coding RNA 1099 non-coding RNA RNA, long non-coding Approved 4q34.3 04q34.3 2013-10-09 2013-10-09 101928656 ENSG00000251504 OTTHUMG00000160725 BU071468 NR_108093 +HGNC:49224 LINC01100 long intergenic non-protein coding RNA 1100 non-coding RNA RNA, long non-coding Approved 3q25.33 03q25.33 2013-10-09 2014-10-01 730109 ENSG00000242107 OTTHUMG00000158954 NR_104132 +HGNC:25923 LINC01101 long intergenic non-protein coding RNA 1101 non-coding RNA RNA, long non-coding Approved 2q14.2 02q14.2 FLJ14816 2013-10-10 2015-01-30 84931 ENSG00000280409 OTTHUMG00000187117 AK027722 NR_027181 +HGNC:27165 LINC01102 long intergenic non-protein coding RNA 1102 non-coding RNA RNA, long non-coding Approved 2q12.1 02q12.1 2013-10-10 2014-11-18 150568 ENSG00000235597 OTTHUMG00000153050 NR_015399 +HGNC:49225 LINC01103 long intergenic non-protein coding RNA 1103 non-coding RNA RNA, long non-coding Approved 2q12.1 02q12.1 2013-10-10 2013-10-10 101927360 ENSG00000234781 OTTHUMG00000153051 NR_110113 +HGNC:49226 LINC01104 long intergenic non-protein coding RNA 1104 non-coding RNA RNA, long non-coding Approved 2q11.2 02q11.2 2013-10-10 2013-10-10 150577 ENSG00000232084 OTTHUMG00000153132 NR_103730 +HGNC:26403 LINC01105 long intergenic non-protein coding RNA 1105 non-coding RNA RNA, long non-coding Approved 2p25.2 02p25.2 "FLJ30594|LOC150622" 2013-10-10 2014-11-20 150622 ENSG00000232044 OTTHUMG00000151462 NR_026832 25392693 +HGNC:26769 LINC01106 long intergenic non-protein coding RNA 1106 non-coding RNA RNA, long non-coding Approved 2q13 02q13 FLJ38359 2013-10-10 2013-10-10 151009 ENSG00000175772 OTTHUMG00000155034 NR_027244 +HGNC:49229 LINC01107 long intergenic non-protein coding RNA 1107 non-coding RNA RNA, long non-coding Approved 2q37.3 02q37.3 2013-10-10 2013-10-10 151171 ENSG00000225493 OTTHUMG00000152849 NR_037809 +HGNC:49234 LINC01108 long intergenic non-protein coding RNA 1108 non-coding RNA RNA, long non-coding Approved 6p23 06p23 LncRNA-ES1 lncrna embryonic stem cell 1 2013-10-11 2013-10-11 102216342 ENSG00000226673 OTTHUMG00000014285 AK056826 NR_108097 22193719 +HGNC:49235 LINC01109 long intergenic non-protein coding RNA 1109 non-coding RNA RNA, long non-coding Approved 8q21.11 08q21.11 lncRNA-N1 lncRNA neuronal 1 2013-10-11 2013-10-11 102216341 ENSG00000271167 OTTHUMG00000184925 AK124684 +HGNC:49237 LINC01111 long intergenic non-protein coding RNA 1111 non-coding RNA RNA, long non-coding Approved 8q21.13 08q21.13 2013-10-11 2016-10-05 101926978 ENSG00000254300 OTTHUMG00000164553 NR_105006 +HGNC:49245 LINC01114 long intergenic non-protein coding RNA 1114 non-coding RNA RNA, long non-coding Approved 2q12.1 02q12.1 "PANCAT|LOC284998" pancreatic cancer associated transcript 2013-10-14 2013-12-17 284998 ENSG00000234177 OTTHUMG00000153066 NR_038231 +HGNC:49258 LINC01115 long intergenic non-protein coding RNA 1115 non-coding RNA RNA, long non-coding Approved 2p25.3 02p25.3 2013-10-14 2013-10-14 339822 ENSG00000237667 OTTHUMG00000151368 NR_111963 +HGNC:49259 LINC01116 long intergenic non-protein coding RNA 1116 non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 2013-10-14 2015-05-06 375295 ENSG00000163364 OTTHUMG00000154156 NR_040001 +HGNC:49260 LINC01117 long intergenic non-protein coding RNA 1117 non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 2013-10-14 2013-10-14 102724224 ENSG00000224577 OTTHUMG00000154157 NR_110599 +HGNC:49261 LINC01118 long intergenic non-protein coding RNA 1118 non-coding RNA RNA, long non-coding Approved 2p21 02p21 2013-10-14 2014-10-01 388948 ENSG00000222005 OTTHUMG00000153080 NR_034099 +HGNC:49262 LINC01119 long intergenic non-protein coding RNA 1119 non-coding RNA RNA, long non-coding Approved 2p21 02p21 2013-10-14 2014-10-01 100134259 ENSG00000239332 OTTHUMG00000153081 NR_024452 +HGNC:49265 LINC01120 long intergenic non-protein coding RNA 1120 non-coding RNA RNA, long non-coding Approved 2q21.1 02q21.1 2013-10-14 2013-10-14 389043 ENSG00000223631 OTTHUMG00000153602 NR_036499 +HGNC:49266 LINC01121 long intergenic non-protein coding RNA 1121 non-coding RNA RNA, long non-coding Approved 2p21 02p21 UNQ6975 2013-10-14 2013-10-14 400952 ENSG00000205054 OTTHUMG00000152484 NR_033831 +HGNC:49267 LINC01122 long intergenic non-protein coding RNA 1122 non-coding RNA RNA, long non-coding Approved 2p16.1 02p16.1 FLJ30838 2013-10-14 2015-05-22 400955 ENSG00000233723 OTTHUMG00000152613 NR_033873 25959816 +HGNC:49269 LINC01123 long intergenic non-protein coding RNA 1123 non-coding RNA RNA, long non-coding Approved 2q13 02q13 2013-10-14 2013-10-14 440894 ENSG00000204588 OTTHUMG00000154954 NR_046110 +HGNC:49270 LINC01124 long intergenic non-protein coding RNA 1124 non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 2013-10-14 2014-10-01 440925 ENSG00000222033 OTTHUMG00000154054 NR_027433 +HGNC:49272 LINC01125 long intergenic non-protein coding RNA 1125 non-coding RNA RNA, long non-coding Approved 2q11.2 02q11.2 2013-10-15 2013-10-15 728537 ENSG00000228486 OTTHUMG00000153062 NR_038386 +HGNC:49275 LINC01126 long intergenic non-protein coding RNA 1126 non-coding RNA RNA, long non-coding Approved 2p21 02p21 2013-10-15 2013-10-15 100129726 ENSG00000279873 OTTHUMG00000152397 "BC032412|CR738297" NR_027251 +HGNC:49292 LINC01127 long intergenic non-protein coding RNA 1127 non-coding RNA RNA, long non-coding Approved 2q11.2 02q11.2 2013-10-15 2013-10-15 100506328 ENSG00000281162 OTTHUMG00000189566 "DB124570|DB153872" NR_103791 +HGNC:49377 LINC01128 long intergenic non-protein coding RNA 1128 non-coding RNA RNA, long non-coding Approved 1p36.33 01p36.33 2013-10-21 2013-10-21 643837 ENSG00000228794 OTTHUMG00000002468 NR_047519 +HGNC:49444 LINC01132 long intergenic non-protein coding RNA 1132 non-coding RNA RNA, long non-coding Approved 1q42.3 01q42.3 2013-12-03 2013-12-03 100506810 ENSG00000227630 OTTHUMG00000038017 AK125357 NR_038856 +HGNC:49447 LINC01133 long intergenic non-protein coding RNA 1133 non-coding RNA RNA, long non-coding Approved 1q23.2 01q23.2 Long non-coding RNAs 788 2013-12-03 2015-05-07 100505633 ENSG00000224259 OTTHUMG00000024077 NR_038849 25908174 +HGNC:49449 LINC01134 long intergenic non-protein coding RNA 1134 non-coding RNA RNA, long non-coding Approved 1p36.32 01p36.32 2013-12-03 2013-12-03 100133612 ENSG00000236423 OTTHUMG00000041129 NR_024455 +HGNC:49450 LINC01135 long intergenic non-protein coding RNA 1135 non-coding RNA RNA, long non-coding Approved 1p32.1 01p32.1 2013-12-03 2013-12-03 100131060 ENSG00000234807 OTTHUMG00000008377 NR_034014 +HGNC:49452 LINC01136 long intergenic non-protein coding RNA 1136 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 2013-12-03 2013-12-03 730227 ENSG00000233791 OTTHUMG00000035835 NR_034150 +HGNC:49453 LINC01137 long intergenic non-protein coding RNA 1137 non-coding RNA RNA, long non-coding Approved 1p34.3 01p34.3 LOC728431 2013-12-03 2014-01-15 728431 ENSG00000233621 OTTHUMG00000004224 NR_038842 +HGNC:49454 LINC01138 long intergenic non-protein coding RNA 1138 non-coding RNA RNA, long non-coding Approved 1q21.2 01q21.2 FLJ39739 LINC00875 long intergenic non-protein coding RNA 875 2013-12-03 2015-01-30 388685 ENSG00000274020 OTTHUMG00000185296 NR_104014 +HGNC:27924 LINC01139 long intergenic non-protein coding RNA 1139 non-coding RNA RNA, long non-coding Approved 1q43 01q43 2013-12-03 2014-11-18 339535 ENSG00000215808 OTTHUMG00000039532 NR_015407 12477932 +HGNC:27922 LINC01140 long intergenic non-protein coding RNA 1140 non-coding RNA RNA, long non-coding Approved 1p22.3 01p22.3 FLJ41676 2013-12-03 2013-12-03 339524 ENSG00000267272 OTTHUMG00000181765 AK123670 NR_026985 12477932 +HGNC:49455 LINC01141 long intergenic non-protein coding RNA 1141 non-coding RNA RNA, long non-coding Approved 1p36.12 01p36.12 2013-12-03 2013-12-03 339505 ENSG00000236963 OTTHUMG00000002842 NR_033887 +HGNC:49456 LINC01142 long intergenic non-protein coding RNA 1142 non-coding RNA RNA, long non-coding Approved 1q24.2 01q24.2 2013-12-03 2013-12-03 284688 ENSG00000224286 OTTHUMG00000035969 NR_026957 +HGNC:49458 LINC01143 long intergenic non-protein coding RNA 1143 non-coding RNA RNA, long non-coding Approved 2p13.3 02p13.3 2013-12-05 2013-12-05 104355141 ENSG00000237751 OTTHUMG00000153230 BX088774 NR_126384 +HGNC:49460 LINC01144 long intergenic non-protein coding RNA 1144 non-coding RNA RNA, long non-coding Approved 1p34.1 01p34.1 TCONS_00000513 2013-12-06 2013-12-06 400752 ENSG00000281912 OTTHUMG00000189536 BC006119 NR_024270 +HGNC:49467 LINC01146 long intergenic non-protein coding RNA 1146 non-coding RNA RNA, long non-coding Approved 14q31.3 14q31.3 2013-12-06 2013-12-06 283587 ENSG00000258867 OTTHUMG00000170740 NR_046094 +HGNC:39757 LINC01149 long intergenic non-protein coding RNA 1149 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 XXbac-BPG181B23.4 2013-12-10 2013-12-10 101929111 ENSG00000230174 OTTHUMG00000133747 +HGNC:49469 LINC01150 long intergenic non-protein coding RNA 1150 non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 "2G7|TCONS_00019134" 2013-12-11 2013-12-11 101927624 ENSG00000229671 OTTHUMG00000150032 "L38282|U62668" NR_120534 8968746 +HGNC:49471 LINC01151 long intergenic non-protein coding RNA 1151 non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 2013-12-11 2013-12-11 104266958 ENSG00000253819 OTTHUMG00000165076 DB186869 NR_126348 +HGNC:16752 LINC01152 long intergenic non-protein coding RNA 1152 non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 "TCONS_00025128|CMPD" 2013-12-11 2013-12-11 102606463 ENSG00000256124 OTTHUMG00000168039 "D43770|DB072529" NR_110124 8789441 +HGNC:49495 LINC01153 long intergenic non-protein coding RNA 1153 non-coding RNA RNA, long non-coding Approved 10q26.12 10q26.12 2013-12-20 2013-12-20 101927889 ENSG00000227143 OTTHUMG00000019173 XR_246197 +HGNC:49504 LINC01154 long intergenic non-protein coding RNA 1154 non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 2014-01-02 2014-01-02 106144575 ENSG00000257477 OTTHUMG00000169932 AA082317 24344320 +HGNC:49512 LINC01157 long intergenic non-protein coding RNA 1157 non-coding RNA RNA, long non-coding Approved 5q13.3 05q13.3 "TCONS_00010378|linc-Enc1" Long non-coding RNAs 788 2014-01-01 2014-07-18 105379037 24381249 MGI:3780541 +HGNC:49513 LINC01158 long intergenic non-protein coding RNA 1158 non-coding RNA RNA, long non-coding Approved 2q12.1 02q12.1 linc-Brn1a 2014-01-01 2014-01-03 100506421 ENSG00000233639 OTTHUMG00000153065 AK096498 NR_037883 24381249 MGI:1913547 RGD:7688151 +HGNC:49514 LINC01159 long intergenic non-protein coding RNA 1159 non-coding RNA RNA, long non-coding Approved 2q12.1 02q12.1 linc-Brn1b 2014-01-01 2014-01-03 2014-01-03 2014-01-03 102682016 ENSG00000229743 OTTHUMG00000153064 AK095498 NR_110374 24381249 +HGNC:49525 LINC01160 long intergenic non-protein coding RNA 1160 non-coding RNA RNA, long non-coding Approved 1p13.2 01p13.2 2014-01-03 2014-01-03 100129269 ENSG00000231346 OTTHUMG00000011958 BG742401 NR_034126 +HGNC:49528 LINC01162 long intergenic non-protein coding RNA 1162 non-coding RNA RNA, long non-coding Approved 7p15.3 07p15.3 2014-01-07 2014-01-07 104355138 ENSG00000232790 OTTHUMG00000152589 CN412322 NR_126381 +HGNC:49530 LINC01163 long intergenic non-protein coding RNA 1163 non-coding RNA RNA, long non-coding Approved 10q26.2 10q26.2 TCONS_00017722 2014-01-08 2014-01-08 101927381 ENSG00000280953 OTTHUMG00000189527 AK124226 XR_242761 +HGNC:49533 LINC01164 long intergenic non-protein coding RNA 1164 non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 2014-01-08 2014-01-08 399827 ENSG00000189275 OTTHUMG00000186599 NR_038365 +HGNC:49534 LINC01165 long intergenic non-protein coding RNA 1165 non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 2014-01-08 2014-01-08 100128830 ENSG00000229081 OTTHUMG00000019291 AK097584 XR_252837 +HGNC:49535 LINC01166 long intergenic non-protein coding RNA 1166 non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 2014-01-08 2014-01-08 101927590 ENSG00000232903 OTTHUMG00000019299 AK095503 XR_242766 +HGNC:49536 LINC01167 long intergenic non-protein coding RNA 1167 non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 TCONS_00018075 2014-01-08 2014-01-08 103695432 ENSG00000224758 OTTHUMG00000019300 BI753673 NR_125763 +HGNC:49537 LINC01168 long intergenic non-protein coding RNA 1168 non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 2014-01-08 2014-01-08 399829 ENSG00000240707 OTTHUMG00000157745 NR_046231 +HGNC:49541 LINC01169 long intergenic non-protein coding RNA 1169 non-coding RNA RNA, long non-coding Approved 15q22.31 15q22.31 2014-01-10 2014-10-07 102723165 ENSG00000259471 OTTHUMG00000172242 "AK096135|BC016970" NR_110372 +HGNC:49542 LINC01170 long intergenic non-protein coding RNA 1170 non-coding RNA RNA, long non-coding Approved 5q23.2 05q23.2 2014-01-10 2014-01-10 103724389 ENSG00000253807 OTTHUMG00000163624 "N72756|AA215598" NR_125774 MGI:5439411 +HGNC:49545 LINC01173 long intergenic non-protein coding RNA 1173 non-coding RNA RNA, long non-coding Approved 2q37.1-q37.2 02q37.1-q37.2 TCONS_00004057 2014-01-13 2014-01-13 106144537 ENSG00000280744 OTTHUMG00000189551 BF185848 NR_132376 +HGNC:49548 LINC01176 long intergenic non-protein coding RNA 1176 non-coding RNA RNA, long non-coding Approved 7p14.3 07p14.3 2014-01-10 2014-01-13 100506516 ENSG00000281404 OTTHUMG00000189554 BM981427 NR_108081 +HGNC:49549 LINC01177 long intergenic non-protein coding RNA 1177 non-coding RNA RNA, long non-coding Approved 16p13.2 16p13.2 2014-01-13 2014-01-13 104355218 ENSG00000261397 OTTHUMG00000177056 AA725682 NR_126397 +HGNC:49556 LINC01179 long intergenic non-protein coding RNA 1179 non-coding RNA RNA, long non-coding Approved 4q32.3 04q32.3 2014-01-14 2014-01-14 101928151 ENSG00000249500 OTTHUMG00000161098 BX648971 NR_121676 +HGNC:49558 LINC01180 long intergenic non-protein coding RNA 1180 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 2014-01-14 2014-01-14 101927017 ENSG00000266979 OTTHUMG00000181821 BC043289 NR_110661 +HGNC:25533 LINC01181 long intergenic non-protein coding RNA 1181 non-coding RNA RNA, long non-coding Approved 8q22.3 08q22.3 FLJ10489 2014-01-14 2014-11-19 379034 ENSG00000250929 OTTHUMG00000164764 AK001351 +HGNC:49564 LINC01182 long intergenic non-protein coding RNA 1182 non-coding RNA RNA, long non-coding Approved 4p15.33 04p15.33 2014-01-14 2014-01-14 101929071 ENSG00000250634 OTTHUMG00000160104 DB054622 NR_121681 +HGNC:49565 LINC01184 long intergenic non-protein coding RNA 1184 non-coding RNA RNA, long non-coding Approved 5q23.3 05q23.3 FLJ33630 2014-01-11 2014-01-15 644873 ENSG00000245937 OTTHUMG00000163312 BX648677 NR_015360 24036268 +HGNC:49572 LINC01185 long intergenic non-protein coding RNA 1185 non-coding RNA RNA, long non-coding Approved 2p16.1 02p16.1 FLJ16341 2014-01-17 2014-01-17 400957 ENSG00000228414 OTTHUMG00000152126 AK122786 NR_033980 +HGNC:49573 LINC01186 long intergenic non-protein coding RNA 1186 non-coding RNA RNA, long non-coding Approved Xp11.3 Xp11.3 2014-01-17 2014-01-17 101927574 ENSG00000236751 OTTHUMG00000021416 BC015977 NR_110388 +HGNC:49575 LINC01187 long intergenic non-protein coding RNA 1187 non-coding RNA RNA, long non-coding Approved 5q35.1 05q35.1 KIDR kidney-specific RNA 2014-01-11 2014-01-17 100507267 ENSG00000249601 OTTHUMG00000163086 AK055811 NR_108022 +HGNC:49592 LINC01189 long intergenic non-protein coding RNA 1189 non-coding RNA RNA, long non-coding Approved 9q13 09q13 2014-01-20 2016-10-05 643648 ENSG00000232827 OTTHUMG00000058150 NR_046203 +HGNC:49595 LINC01191 long intergenic non-protein coding RNA 1191 non-coding RNA RNA, long non-coding Approved 2q14.1 02q14.1 "VIN|lnc-ACTR3" virus inducible lincRNa Long non-coding RNAs 788 2014-01-20 2014-07-18 440900 ENSG00000234199 OTTHUMG00000153529 AW016224 NR_034128 24440876 +HGNC:37197 LINC01192 long intergenic non-protein coding RNA 1192 non-coding RNA RNA, long non-coding Approved 3q26.1 03q26.1 CT64 cancer/testis antigen 64 2012-11-30 2014-01-21 2014-01-21 2014-01-21 647107 ENSG00000241369 OTTHUMG00000158021 BX103208 NR_033945 15905330 +HGNC:28003 LINC01193 long intergenic non-protein coding RNA 1193 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 LOC348120 CT60 cancer/testis antigen 60 2012-11-30 2014-01-21 2014-01-21 2014-01-21 348120 ENSG00000258710 OTTHUMG00000171709 BC047459 NR_040094 15905330 +HGNC:37171 LINC01194 long intergenic non-protein coding RNA 1194 non-coding RNA RNA, long non-coding Approved 5p15.2 05p15.2 TAG tumor antigen gene CT49 cancer/testis antigen 49 2012-11-30 2014-01-21 2014-01-21 2014-01-21 404663 ENSG00000248131 OTTHUMG00000161760 NR_033383 14871852 617097 +HGNC:49550 LINC01195 long intergenic non-protein coding RNA 1195 non-coding RNA RNA, long non-coding Approved 16p13.2 16p13.2 2014-01-15 2014-01-21 104266959 ENSG00000261075 OTTHUMG00000177057 CR748468 NR_126349 +HGNC:49597 LINC01197 long intergenic non-protein coding RNA 1197 non-coding RNA RNA, long non-coding Approved 15q26.2 15q26.2 2014-01-21 2014-01-21 400456 ENSG00000248441 OTTHUMG00000171818 BC040875 NR_034095 +HGNC:49598 LINC01198 long intergenic non-protein coding RNA 1198 non-coding RNA RNA, long non-coding Approved 13q14.13 13q14.13 2014-01-21 2014-07-28 101929344 ENSG00000231817 OTTHUMG00000016875 BC046635 NR_120426 +HGNC:49632 LINC01201 long intergenic non-protein coding RNA 1201 non-coding RNA RNA, long non-coding Approved Xq26.1 Xq26.1 TCONS_00017091 2014-01-24 2014-01-28 104266960 ENSG00000228659 OTTHUMG00000022403 AA418797 NR_126350 +HGNC:49633 LINC01202 long intergenic non-protein coding RNA 1202 non-coding RNA RNA, long non-coding Approved 5q34 05q34 2014-01-24 2014-01-28 104326188 ENSG00000280776 OTTHUMG00000189552 BI755689 NR_126372 24463510 +HGNC:49634 LINC01203 long intergenic non-protein coding RNA 1203 non-coding RNA RNA, long non-coding Approved Xp22.2 Xp22.2 2014-01-28 2014-01-28 100133123 ENSG00000226985 OTTHUMG00000021151 NR_045260 +HGNC:49635 LINC01204 long intergenic non-protein coding RNA 1204 non-coding RNA RNA, long non-coding Approved Xp11.3 Xp11.3 2014-01-28 2014-01-28 101927528 ENSG00000229563 OTTHUMG00000021406 NR_104645 +HGNC:49636 LINC01205 long intergenic non-protein coding RNA 1205 non-coding RNA RNA, long non-coding Approved 3q13.13 03q13.13 2014-01-28 2014-01-28 401082 ENSG00000228980 OTTHUMG00000159217 NR_109842 +HGNC:49637 LINC01206 long intergenic non-protein coding RNA 1206 non-coding RNA RNA, long non-coding Approved 3q26.33 03q26.33 2014-01-28 2014-01-28 100996490 ENSG00000242512 OTTHUMG00000158238 NR_104146 +HGNC:49638 LINC01207 long intergenic non-protein coding RNA 1207 non-coding RNA RNA, long non-coding Approved 4q32.3 04q32.3 2014-01-28 2014-01-28 100505989 ENSG00000248771 OTTHUMG00000161261 NR_038834 RGD:6498547 +HGNC:49639 LINC01208 long intergenic non-protein coding RNA 1208 non-coding RNA RNA, long non-coding Approved 3q26.32 03q26.32 2014-01-28 2014-01-28 100505547 ENSG00000223715 OTTHUMG00000157218 NR_109968 +HGNC:49640 LINC01209 long intergenic non-protein coding RNA 1209 non-coding RNA RNA, long non-coding Approved 3q26.32 03q26.32 2014-01-28 2014-01-28 101928684 ENSG00000228308 OTTHUMG00000157300 BC041880 NR_110819 +HGNC:49642 LINC01210 long intergenic non-protein coding RNA 1210 non-coding RNA RNA, long non-coding Approved 3q22.3 03q22.3 2014-01-28 2014-01-28 100507274 ENSG00000239513 OTTHUMG00000159758 NR_109987 +HGNC:49648 LINC01213 long intergenic non-protein coding RNA 1213 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 2014-01-28 2014-01-28 101927992 ENSG00000244541 OTTHUMG00000159737 NR_110168 +HGNC:49650 LINC01214 long intergenic non-protein coding RNA 1214 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 2014-01-28 2014-01-28 101928022 ENSG00000243550 OTTHUMG00000159735 NR_110186 +HGNC:49651 LINC01215 long intergenic non-protein coding RNA 1215 non-coding RNA RNA, long non-coding Approved 3q13.12 03q13.12 2014-01-28 2014-01-28 101929623 ENSG00000271856 OTTHUMG00000185591 NR_110030 +HGNC:41418 LINC01216 long intergenic non-protein coding RNA 1216 non-coding RNA RNA, long non-coding Approved 4q24 04q24 EMCN-IT3 EMCN intronic transcript 3 (non-protein coding) 2011-05-24 2014-01-29 2014-01-29 2014-11-18 100874275 ENSG00000250223 OTTHUMG00000161053 NR_046811 +HGNC:41419 LINC01217 long intergenic non-protein coding RNA 1217 non-coding RNA RNA, long non-coding Approved 4q24 04q24 EMCN-IT2 EMCN intronic transcript 2 (non-protein coding) 2011-05-24 2014-01-29 2014-01-29 2014-11-18 100874276 ENSG00000251219 OTTHUMG00000161750 +HGNC:41420 LINC01218 long intergenic non-protein coding RNA 1218 non-coding RNA RNA, long non-coding Approved 4q24 04q24 EMCN-IT1 EMCN intronic transcript 1 (non-protein coding) 2011-05-24 2014-01-29 2014-01-29 2014-11-19 100874277 ENSG00000251636 OTTHUMG00000161011 +HGNC:49653 LINC01219 long intergenic non-protein coding RNA 1219 non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 2014-01-25 2014-01-29 104355220 ENSG00000232987 OTTHUMG00000012473 BX092271 NR_126400 +HGNC:49664 LINC01220 long intergenic non-protein coding RNA 1220 non-coding RNA RNA, long non-coding Approved 14q24.3 14q24.3 2014-01-31 2014-01-31 731223 ENSG00000259687 OTTHUMG00000171867 NR_038421 +HGNC:49671 LINC01221 long intergenic non-protein coding RNA 1221 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 TCONS_00000366 2014-02-04 2014-02-04 104266961 ENSG00000235492 OTTHUMG00000035893 BG613973 NR_126351 +HGNC:49672 LINC01222 long intergenic non-protein coding RNA 1222 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 TCONS_00000112 2014-02-04 2014-02-12 102800316 ENSG00000233410 OTTHUMG00000035892 BC040869 NR_110525 +HGNC:49676 LINC01224 long intergenic non-protein coding RNA 1224 non-coding RNA RNA, long non-coding Approved 19p12 19p12 2014-02-04 2014-02-04 104472717 ENSG00000269416 OTTHUMG00000183272 NR_126449 +HGNC:49677 LINC01225 long intergenic non-protein coding RNA 1225 non-coding RNA RNA, long non-coding Approved 1p35.2 01p35.2 2014-02-04 2015-03-19 149086 ENSG00000260386 OTTHUMG00000174814 NR_034112 +HGNC:49678 LINC01226 long intergenic non-protein coding RNA 1226 non-coding RNA RNA, long non-coding Approved 1p35.2 01p35.2 2014-02-04 2014-02-04 284551 ENSG00000223907 OTTHUMG00000003882 NR_027085 +HGNC:49680 LINC01227 long intergenic non-protein coding RNA 1227 non-coding RNA RNA, long non-coding Approved 16q23.2 16q23.2 2014-02-05 2014-02-05 101928276 ENSG00000260737 OTTHUMG00000176267 NR_104665 +HGNC:49681 LINC01228 long intergenic non-protein coding RNA 1228 non-coding RNA RNA, long non-coding Approved 16q23.2 16q23.2 lincRNA-DYNLRB2-2 2014-02-01 2014-02-05 104266962 ENSG00000261082 OTTHUMG00000176977 BM973870 24493833 +HGNC:49682 LINC01229 long intergenic non-protein coding RNA 1229 non-coding RNA RNA, long non-coding Approved 16q23.2 16q23.2 TCONS_00024480 2014-10-23 2014-10-23 101928248 ENSG00000260876 OTTHUMG00000176975 NR_104661 +HGNC:49686 LINC01230 long intergenic non-protein coding RNA 1230 non-coding RNA RNA, long non-coding Approved 9p24.3 09p24.3 "linc-DMRT2|lnc-DRMT2|TCONS_00015639" 2014-02-04 2014-02-10 102800446 ENSG00000281769 OTTHUMG00000189515 AK055761 NR_110643 24504737 +HGNC:49688 LINC01231 long intergenic non-protein coding RNA 1231 non-coding RNA RNA, long non-coding Approved 9p24.2 09p24.2 2014-02-12 2014-02-12 101929247 ENSG00000236511 OTTHUMG00000019454 BC041456 NR_121585 +HGNC:49755 LINC01232 long intergenic non-protein coding RNA 1232 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 "FLJ41590|TCONS_00021520" 2014-02-14 2014-03-04 102725509 ENSG00000280734 OTTHUMG00000189525 AK123584 NR_110731 24522499 +HGNC:49756 LINC01233 long intergenic non-protein coding RNA 1233 non-coding RNA RNA, long non-coding Approved 19p12 19p12 XLOC_013014 2014-02-14 2014-02-14 100128139 ENSG00000269364 OTTHUMG00000182980 DB454962 NR_110664 24522499 +HGNC:49757 LINC01234 long intergenic non-protein coding RNA 1234 non-coding RNA RNA, long non-coding Approved 12q24.13 12q24.13 onco-lncRNA-32 2014-02-14 2015-07-29 100506465 ENSG00000249550 OTTHUMG00000169644 NR_110026 24522499 +HGNC:49769 LINC01235 long intergenic non-protein coding RNA 1235 non-coding RNA RNA, long non-coding Approved 9p23 09p23 FLJ41200 2014-02-14 2014-02-14 401492 ENSG00000270547 OTTHUMG00000185076 AK123194 NR_033863 +HGNC:49793 LINC01237 long intergenic non-protein coding RNA 1237 non-coding RNA RNA, long non-coding Approved 2q37.3 02q37.3 2014-02-20 2014-02-20 101927289 ENSG00000233806 OTTHUMG00000151343 NR_110220 +HGNC:49796 LINC01239 long intergenic non-protein coding RNA 1239 non-coding RNA RNA, long non-coding Approved 9p21.3 09p21.3 2014-02-21 2014-02-21 441389 ENSG00000234840 OTTHUMG00000019696 "AK092601|AA205910" NR_038977 +HGNC:49802 LINC01240 entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:49804 LINC01241 long intergenic non-protein coding RNA 1241 non-coding RNA RNA, long non-coding Approved 9p21.2 09p21.2 2014-03-06 2014-03-06 101929582 ENSG00000236306 OTTHUMG00000019705 BC043546 NR_121604 +HGNC:49810 LINC01242 long intergenic non-protein coding RNA 1242 non-coding RNA RNA, long non-coding Approved 9p21.1 09p21.1 2014-03-06 2014-03-06 401497 ENSG00000280683 OTTHUMG00000189587 NR_046204 +HGNC:49814 LINC01243 long intergenic non-protein coding RNA 1243 non-coding RNA RNA, long non-coding Approved 9p21.1 09p21.1 2014-03-06 2014-03-06 101929620 ENSG00000260720 OTTHUMG00000175494 BC040892 NR_135134 +HGNC:49840 LINC01246 long intergenic non-protein coding RNA 1246 non-coding RNA RNA, long non-coding Approved 2p25.2 02p25.2 2014-06-01 2014-06-12 102800315 OTTHUMG00000151631 BX096693 NR_110498 +HGNC:49841 LINC01247 long intergenic non-protein coding RNA 1247 non-coding RNA RNA, long non-coding Approved 2p25.2 02p25.2 2014-03-13 2014-03-13 101929390 ENSG00000227007 OTTHUMG00000151457 NR_110251 +HGNC:49842 LINC01248 long intergenic non-protein coding RNA 1248 non-coding RNA RNA, long non-coding Approved 2p25.2 02p25.2 2014-03-13 2014-03-13 102723818 ENSG00000224128 OTTHUMG00000151424 BX111928 NR_110580 +HGNC:49843 LINC01249 long intergenic non-protein coding RNA 1249 non-coding RNA RNA, long non-coding Approved 2p25.2 02p25.2 2014-03-13 2014-03-13 727982 ENSG00000231532 OTTHUMG00000151581 "AK307324|BC047589" NR_034134 +HGNC:49844 LINC01250 long intergenic non-protein coding RNA 1250 non-coding RNA RNA, long non-coding Approved 2p25.3 02p25.3 FLJ37991 2014-03-13 2014-03-13 101927554 ENSG00000234423 OTTHUMG00000151427 AK095310 NR_110228 +HGNC:49845 LINC01251 long intergenic non-protein coding RNA 1251 non-coding RNA RNA, long non-coding Approved 9p13.3 09p13.3 2014-03-14 2014-03-21 101929688 ENSG00000233776 OTTHUMG00000000413 BX115224 NR_109755 +HGNC:27888 LINC01252 long intergenic non-protein coding RNA 1252 non-coding RNA RNA, long non-coding Approved 12p13.2 12p13.2 2014-03-18 2014-03-18 338817 ENSG00000247157 OTTHUMG00000168537 NR_033890 12477932 +HGNC:49870 LINC01254 long intergenic non-protein coding RNA 1254 non-coding RNA RNA, long non-coding Approved 18p11.22 18p11.22 2014-03-18 2014-03-18 101927350 ENSG00000260913 OTTHUMG00000176120 NR_110775 +HGNC:49871 LINC01255 long intergenic non-protein coding RNA 1255 non-coding RNA RNA, long non-coding Approved 18p11.21 18p11.21 2014-03-18 2014-03-18 101927433 ENSG00000267252 OTTHUMG00000180596 NR_110778 +HGNC:49895 LINC01256 long intergenic non-protein coding RNA 1256 non-coding RNA RNA, long non-coding Approved 4q28.3 04q28.3 TCONS_l2_00021715 2014-03-18 2014-03-18 104355285 ENSG00000251398 OTTHUMG00000161768 BX088800 NR_126401 +HGNC:26972 LINC01257 long intergenic non-protein coding RNA 1257 non-coding RNA RNA, long non-coding Approved 12q24.33 12q24.33 2014-03-20 2014-03-20 116437 ENSG00000204603 OTTHUMG00000168350 BC112214 NR_026670 +HGNC:49898 LINC01258 long intergenic non-protein coding RNA 1258 non-coding RNA RNA, long non-coding Approved 4p14 04p14 2014-03-20 2014-03-20 101928776 ENSG00000249534 OTTHUMG00000160414 NR_110951 +HGNC:49899 LINC01259 long intergenic non-protein coding RNA 1259 non-coding RNA RNA, long non-coding Approved 4p14 04p14 TCONS_00007515 2014-03-20 2014-03-20 106144599 ENSG00000249667 OTTHUMG00000160486 CR984336 +HGNC:49900 LINC01260 long intergenic non-protein coding RNA 1260 non-coding RNA RNA, long non-coding Approved 20q13.12 20q13.12 2014-03-20 2014-03-20 79015 ENSG00000132832 OTTHUMG00000032542 BC000849 NR_034104 +HGNC:50275 LINC01262 long intergenic non-protein coding RNA 1262 non-coding RNA RNA, long non-coding Approved 4q35.2 04q35.2 "TCONS_l2_00021807|RP11-462G22.1" 2014-03-20 2014-03-24 101928971 ENSG00000250739 OTTHUMG00000160329 BC092460 NR_121679 24651478 +HGNC:50282 LINC01264 long intergenic non-protein coding RNA 1264 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 RP11-124O11.2 2014-03-27 2014-03-31 104266963 ENSG00000229630 OTTHUMG00000018022 BE644626 NR_126352 24672800 +HGNC:50297 LINC01265 long intergenic non-protein coding RNA 1265 non-coding RNA RNA, long non-coding Approved 5p13.1 05p13.1 2014-04-03 2014-04-03 101926904 ENSG00000249911 OTTHUMG00000162038 NR_104631 +HGNC:50309 LINC01266 long intergenic non-protein coding RNA 1266 non-coding RNA RNA, long non-coding Approved 3p26.3 03p26.3 2014-04-07 2014-04-07 101927215 ENSG00000224957 OTTHUMG00000154876 NR_110118 +HGNC:50320 LINC01267 long intergenic non-protein coding RNA 1267 non-coding RNA RNA, long non-coding Approved 3p25.1 03p25.1 2014-04-07 2014-04-07 101927565 ENSG00000251576 OTTHUMG00000167093 NR_110135 +HGNC:50323 LINC01268 long intergenic non-protein coding RNA 1268 non-coding RNA RNA, long non-coding Approved 6q21 06q21 LOC285758 2014-04-10 2014-05-15 285758 ENSG00000227502 OTTHUMG00000015405 BC037331 NR_038863 24821221 +HGNC:50325 LINC01269 long intergenic non-protein coding RNA 1269 non-coding RNA RNA, long non-coding Approved 14q24.2 14q24.2 2014-04-15 2014-04-15 103695436 ENSG00000258689 OTTHUMG00000171248 DA437066 NR_125769 +HGNC:27658 LINC01270 long intergenic non-protein coding RNA 1270 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-04-15 2014-11-18 284751 ENSG00000203999 OTTHUMG00000032719 AK090605 NR_034124 +HGNC:50327 LINC01271 long intergenic non-protein coding RNA 1271 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-04-15 2014-04-15 101927586 ENSG00000233077 OTTHUMG00000032720 NR_109950 +HGNC:50328 LINC01272 long intergenic non-protein coding RNA 1272 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-04-15 2014-04-15 100506115 ENSG00000224397 OTTHUMG00000032721 XM_006723680 +HGNC:50329 LINC01273 long intergenic non-protein coding RNA 1273 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-04-15 2014-04-15 101927541 ENSG00000231742 OTTHUMG00000032718 NR_109943 +HGNC:50333 LINC01276 long intergenic non-protein coding RNA 1276 non-coding RNA RNA, long non-coding Approved 6p21.1 06p21.1 2014-04-15 2014-04-15 103106903 ENSG00000226917 OTTHUMG00000067927 DQ141194 NR_120347 +HGNC:50334 LINC01277 long intergenic non-protein coding RNA 1277 non-coding RNA RNA, long non-coding Approved 6q24.2 06q24.2 2014-04-15 2014-04-15 100507489 ENSG00000229017 OTTHUMG00000015718 NR_038987 +HGNC:28090 LINC01278 long intergenic non-protein coding RNA 1278 non-coding RNA RNA, long non-coding Approved Xq11.1 Xq11.1 2014-04-15 2014-04-15 92249 ENSG00000235437 OTTHUMG00000021699 NR_015353 +HGNC:50335 LINC01279 long intergenic non-protein coding RNA 1279 non-coding RNA RNA, long non-coding Approved 3q13.2 03q13.2 2014-04-15 2015-01-29 100506621 ENSG00000272761 OTTHUMG00000185924 AK126393 NR_109779 +HGNC:50336 LINC01280 long intergenic non-protein coding RNA 1280 non-coding RNA RNA, long non-coding Approved 2q35 02q35 2014-04-15 2014-04-15 101928232 ENSG00000224391 OTTHUMG00000155340 AK307257 NR_110392 +HGNC:50337 LINC01281 long intergenic non-protein coding RNA 1281 non-coding RNA RNA, long non-coding Approved Xp11.4 Xp11.4 2014-04-15 2014-04-15 286442 ENSG00000235304 OTTHUMG00000024095 NR_038968 +HGNC:50338 LINC01282 long intergenic non-protein coding RNA 1282 non-coding RNA RNA, long non-coding Approved Xp11.4 Xp11.4 2014-04-15 2014-04-15 101927449 ENSG00000236747 OTTHUMG00000024096 BC043536 NR_110385 +HGNC:50342 LINC01284 long intergenic non-protein coding RNA 1284 non-coding RNA RNA, long non-coding Approved Xp11.22 Xp11.22 2014-04-15 2014-04-15 101926971 ENSG00000230317 OTTHUMG00000021529 NR_110382 +HGNC:50344 LINC01285 long intergenic non-protein coding RNA 1285 non-coding RNA RNA, long non-coding Approved Xq24 Xq24 2014-04-15 2014-10-07 101928287 ENSG00000203650 OTTHUMG00000022260 NR_110393 +HGNC:50351 LINC01287 long intergenic non-protein coding RNA 1287 non-coding RNA RNA, long non-coding Approved 7q36.2 07q36.2 TCONS_l2_00027522 2014-04-17 2014-04-17 103724390 ENSG00000234722 OTTHUMG00000151464 BF514057 NR_125776 +HGNC:50353 LINC01288 long intergenic non-protein coding RNA 1288 non-coding RNA RNA, long non-coding Approved 8p12 08p12 TCONS_00014671 2014-04-17 2014-04-17 103689844 ENSG00000254344 OTTHUMG00000163964 DB066514 NR_125746 +HGNC:50354 LINC01289 long intergenic non-protein coding RNA 1289 non-coding RNA RNA, long non-coding Approved 8q12.3 08q12.3 2014-04-17 2014-04-17 286184 ENSG00000253734 OTTHUMG00000164399 BC037345 NR_038875 +HGNC:50356 LINC01290 long intergenic non-protein coding RNA 1290 non-coding RNA RNA, long non-coding Approved 16p13.13 16p13.13 2014-04-17 2014-04-17 106144584 ENSG00000260468 OTTHUMG00000177103 "BF853722|BI010826" +HGNC:50358 LINC01291 long intergenic non-protein coding RNA 1291 non-coding RNA RNA, long non-coding Approved 2p12 02p12 2014-04-23 2014-04-23 102724515 ENSG00000204792 OTTHUMG00000152932 CV382059 NR_125792 +HGNC:50362 LINC01293 long intergenic non-protein coding RNA 1293 non-coding RNA RNA, long non-coding Approved 2p12 02p12 TCONS_00002938 2014-04-23 2014-04-23 101927861 ENSG00000230836 OTTHUMG00000152931 XR_940252 +HGNC:50443 LINC01297 long intergenic non-protein coding RNA 1297 non-coding RNA RNA, long non-coding Approved 14q11.2 14q11.2 2014-04-29 2015-01-29 106146148 ENSG00000274827 OTTHUMG00000170514 BF001177 NR_132385 +HGNC:32292 LINC01298 long intergenic non-protein coding RNA 1298 non-coding RNA RNA, long non-coding Approved 8q22.1 08q22.1 C8orf69 chromosome 8 open reading frame 69 2005-09-22 2014-04-29 2014-04-29 2014-04-29 619344 ENSG00000253351 OTTHUMG00000164662 AA469917 NR_046232 +HGNC:27839 LINC01299 long intergenic non-protein coding RNA 1299 non-coding RNA RNA, long non-coding Approved 8q13.1 08q13.1 2014-04-30 2014-04-30 286186 ENSG00000254081 OTTHUMG00000164373 AK094960 NR_033893 +HGNC:50460 LINC01300 long intergenic non-protein coding RNA 1300 non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 2014-04-30 2014-04-30 731779 ENSG00000253595 OTTHUMG00000164482 NR_024441 +HGNC:50464 LINC01301 long intergenic non-protein coding RNA 1301 non-coding RNA RNA, long non-coding Approved 8q12.1 08q12.1 2014-04-30 2014-04-30 100505532 ENSG00000251396 OTTHUMG00000165326 NR_103854 +HGNC:50472 LINC01304 long intergenic non-protein coding RNA 1304 non-coding RNA RNA, long non-coding Approved 2p25.3 02p25.3 2014-04-30 2014-04-30 100505964 ENSG00000237401 OTTHUMG00000151486 NR_037881 +HGNC:27690 LINC01305 long intergenic non-protein coding RNA 1305 non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 2014-04-30 2014-11-18 285084 ENSG00000231453 OTTHUMG00000154148 NR_038897 +HGNC:50494 LINC01307 long intergenic non-protein coding RNA 1307 non-coding RNA RNA, long non-coding Approved 1p21.2 01p21.2 RP11-157N3.1 2014-05-09 2014-05-09 104355286 ENSG00000231671 OTTHUMG00000010834 BG203915 NR_126402 +HGNC:50497 LINC01309 long intergenic non-protein coding RNA 1309 non-coding RNA RNA, long non-coding Approved 13q33.1 13q33.1 TCONS_l2_00007459 2014-05-09 2014-05-09 104326190 ENSG00000234551 OTTHUMG00000017314 AA421210 NR_126374 +HGNC:50501 LINC01310 long intergenic non-protein coding RNA 1310 non-coding RNA RNA, long non-coding Approved 22q13.32 22q13.32 WI2-81516E3.1 2014-05-12 2014-05-12 100128946 ENSG00000205632 OTTHUMG00000150307 AK056844 NR_038944 +HGNC:50503 LINC01311 long intergenic non-protein coding RNA 1311 non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 2014-05-12 2014-05-12 100652736 ENSG00000260924 OTTHUMG00000172740 NR_103767 +HGNC:28525 LINC01312 long intergenic non-protein coding RNA 1312 non-coding RNA RNA, long non-coding Approved 6q23.2 06q23.2 MGC34034 2014-05-13 2014-05-13 154089 ENSG00000223586 OTTHUMG00000015606 NR_027030 12477932 +HGNC:50507 LINC01314 long intergenic non-protein coding RNA 1314 non-coding RNA RNA, long non-coding Approved 15q25.1 15q25.1 2014-05-13 2014-05-13 100996492 ENSG00000259417 OTTHUMG00000172080 NR_120317 +HGNC:50513 LINC01315 long intergenic non-protein coding RNA 1315 non-coding RNA RNA, long non-coding Approved 22q13.2 22q13.2 lnc-C22orf32-1 2014-05-15 2014-06-05 102723775 ENSG00000229891 OTTHUMG00000150696 BC038245 NR_120595 +HGNC:50523 LINC01317 long intergenic non-protein coding RNA 1317 non-coding RNA RNA, long non-coding Approved 2p22.3 02p22.3 2014-05-19 2014-05-19 104355287 ENSG00000203386 OTTHUMG00000152138 BQ213083 NR_126403 24833871 +HGNC:50524 LINC01318 long intergenic non-protein coding RNA 1318 non-coding RNA RNA, long non-coding Approved 2p22.3 02p22.3 2014-05-19 2014-05-19 106144585 ENSG00000237790 OTTHUMG00000152139 DB027554 NR_132381 +HGNC:50526 LINC01320 long intergenic non-protein coding RNA 1320 non-coding RNA RNA, long non-coding Approved 2p22.3 02p22.3 2014-05-19 2014-05-19 104355288 ENSG00000228262 OTTHUMG00000152144 "BX395998|BI759570" NR_126404 +HGNC:50528 LINC01322 long intergenic non-protein coding RNA 1322 non-coding RNA RNA, long non-coding Approved 3q26.1 03q26.1 2014-05-14 2014-05-20 103695433 ENSG00000244128 OTTHUMG00000158130 "DA224933|DA156477" NR_125764 +HGNC:50529 LINC01323 long intergenic non-protein coding RNA 1323 non-coding RNA RNA, long non-coding Approved 3q26.1 03q26.1 TCONS_00005874 2014-05-20 2015-08-26 106635527 ENSG00000241636 OTTHUMG00000158384 BG192479 +HGNC:50530 LINC01324 long intergenic non-protein coding RNA 1324 non-coding RNA RNA, long non-coding Approved 3q26.1 03q26.1 2014-05-20 2014-05-20 104355289 ENSG00000241767 OTTHUMG00000158064 BG221042 NR_126405 +HGNC:50532 LINC01326 long intergenic non-protein coding RNA 1326 non-coding RNA RNA, long non-coding Approved 3q26.1 03q26.1 TCONS_00005878 2014-05-20 2014-05-20 106144540 ENSG00000244321 OTTHUMG00000158209 BG190199 +HGNC:50533 LINC01327 long intergenic non-protein coding RNA 1327 non-coding RNA RNA, long non-coding Approved 3q26.1 03q26.1 TCONS_00005644 2014-05-20 2014-05-20 104310350 ENSG00000241669 OTTHUMG00000158284 BF059162 NR_126353 +HGNC:50536 LINC01330 long intergenic non-protein coding RNA 1330 non-coding RNA RNA, long non-coding Approved 3q26.1-q26.2 03q26.1-q26.2 2014-05-14 2016-10-11 646168 ENSG00000244227 OTTHUMG00000158503 "AK093355|BC043538" NR_033843 +HGNC:50538 LINC01331 long intergenic non-protein coding RNA 1331 non-coding RNA RNA, long non-coding Approved 5q13.3 05q13.3 2014-05-20 2014-05-20 104310351 ENSG00000248673 OTTHUMG00000162462 DA145234 NR_126354 +HGNC:50540 LINC01332 long intergenic non-protein coding RNA 1332 non-coding RNA RNA, long non-coding Approved 5q13.3 05q13.3 TCONS_00009701 2014-05-20 2014-05-20 106144530 ENSG00000250446 OTTHUMG00000162458 DA178531 +HGNC:50539 LINC01333 long intergenic non-protein coding RNA 1333 non-coding RNA RNA, long non-coding Approved 5q13.3 05q13.3 2014-05-14 2014-05-20 2014-05-20 2014-05-20 101929082 ENSG00000249343 OTTHUMG00000162460 BC043537 NR_105010 +HGNC:50542 LINC01335 long intergenic non-protein coding RNA 1335 non-coding RNA RNA, long non-coding Approved 5q13.3 05q13.3 2014-05-14 2014-05-20 102503429 ENSG00000248942 OTTHUMG00000162459 AI018361 NR_105009 +HGNC:50543 LINC01336 long intergenic non-protein coding RNA 1336 non-coding RNA RNA, long non-coding Approved 5q13.3 05q13.3 2014-05-20 2014-05-20 104326191 ENSG00000250889 OTTHUMG00000162467 DB344036 NR_126375 +HGNC:50546 LINC01337 long intergenic non-protein coding RNA 1337 non-coding RNA RNA, long non-coding Approved 5q14.1 05q14.1 TCONS_00009713 2014-05-20 2014-05-20 103689917 ENSG00000251221 OTTHUMG00000162533 DB525610 NR_125754 +HGNC:50547 LINC01338 long intergenic non-protein coding RNA 1338 non-coding RNA RNA, long non-coding Approved 5q14.2 05q14.2 2014-05-20 2014-05-20 102546175 ENSG00000281327 OTTHUMG00000189588 NR_105016 +HGNC:50549 LINC01339 long intergenic non-protein coding RNA 1339 non-coding RNA RNA, long non-coding Approved 5q14.3 05q14.3 2014-05-20 2014-05-20 101929495 ENSG00000248555 OTTHUMG00000162621 AI674738 NR_120601 +HGNC:50550 LINC01340 long intergenic non-protein coding RNA 1340 non-coding RNA RNA, long non-coding Approved 5q15 05q15 2014-05-20 2014-05-20 102546227 ENSG00000250331 OTTHUMG00000162701 BQ432570 NR_105028 +HGNC:49457 LINC01341 long intergenic non-protein coding RNA 1341 non-coding RNA RNA, long non-coding Approved 1q44 01q44 2014-05-21 2014-05-21 149134 ENSG00000227953 OTTHUMG00000040519 NR_015422 +HGNC:50551 LINC01342 long intergenic non-protein coding RNA 1342 non-coding RNA RNA, long non-coding Approved 1p36.33 01p36.33 2014-05-21 2014-05-21 254099 ENSG00000223823 OTTHUMG00000000827 BC028014 NR_038869 +HGNC:50553 LINC01343 long intergenic non-protein coding RNA 1343 non-coding RNA RNA, long non-coding Approved 1p34.3 01p34.3 2014-05-21 2014-05-21 339442 ENSG00000237290 OTTHUMG00000000479 BC042675 NR_038928 +HGNC:50554 LINC01344 long intergenic non-protein coding RNA 1344 non-coding RNA RNA, long non-coding Approved 1q25.3 01q25.3 2014-05-21 2014-05-21 400799 ENSG00000228918 OTTHUMG00000037403 NR_104175 +HGNC:50563 LINC01346 long intergenic non-protein coding RNA 1346 non-coding RNA RNA, long non-coding Approved 1p36.32 01p36.32 2014-05-21 2014-05-21 728716 ENSG00000233304 OTTHUMG00000000499 NR_040065 +HGNC:50566 LINC01347 long intergenic non-protein coding RNA 1347 non-coding RNA RNA, long non-coding Approved 1q43 01q43 2014-05-21 2014-05-21 731275 ENSG00000214837 OTTHUMG00000039861 NR_029401 +HGNC:50567 LINC01348 long intergenic non-protein coding RNA 1348 non-coding RNA RNA, long non-coding Approved 1q42 01q42 2014-05-21 2014-05-21 731656 ENSG00000280587 OTTHUMG00000189738 AK128489 NR_027454 +HGNC:50568 LINC01349 long intergenic non-protein coding RNA 1349 non-coding RNA RNA, long non-coding Approved 1p21.2 01p21.2 2014-05-21 2014-05-21 100128787 ENSG00000230402 OTTHUMG00000040491 NR_038914 +HGNC:50575 LINC01350 long intergenic non-protein coding RNA 1350 non-coding RNA RNA, long non-coding Approved 1q25.3 01q25.3 2014-05-21 2014-05-21 101929093 ENSG00000228309 OTTHUMG00000035577 NR_110793 +HGNC:50577 LINC01351 long intergenic non-protein coding RNA 1351 non-coding RNA RNA, long non-coding Approved 1q31.1 01q31.1 2014-05-21 2014-05-21 101929120 ENSG00000237457 OTTHUMG00000035535 NR_110717 +HGNC:50578 LINC01352 long intergenic non-protein coding RNA 1352 non-coding RNA RNA, long non-coding Approved 1q41 01q41 2014-05-21 2014-05-21 101929730 ENSG00000238078 OTTHUMG00000037355 NR_110797 +HGNC:50580 LINC01353 long intergenic non-protein coding RNA 1353 non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 2014-05-21 2014-05-21 100506775 ENSG00000231507 OTTHUMG00000041219 NR_117097 +HGNC:50581 LINC01354 long intergenic non-protein coding RNA 1354 non-coding RNA RNA, long non-coding Approved 1q42.2 01q42.2 2014-05-21 2014-05-21 100506795 ENSG00000231768 OTTHUMG00000037976 NR_038426 +HGNC:50584 LINC01355 long intergenic non-protein coding RNA 1355 non-coding RNA RNA, long non-coding Approved 1p36.12 01p36.12 2014-05-21 2014-05-21 100996511 ENSG00000261326 OTTHUMG00000175761 NR_110616 +HGNC:50587 LINC01356 long intergenic non-protein coding RNA 1356 non-coding RNA RNA, long non-coding Approved 1p13.2 01p13.2 2014-05-21 2014-05-21 100996702 ENSG00000215866 OTTHUMG00000012022 NR_103746 Q8N9X3 +HGNC:50589 LINC01358 long intergenic non-protein coding RNA 1358 non-coding RNA RNA, long non-coding Approved 1p32.1 01p32.1 2014-05-21 2016-10-04 101926925 ENSG00000237352 OTTHUMG00000008373 NR_110626 +HGNC:50591 LINC01359 long intergenic non-protein coding RNA 1359 non-coding RNA RNA, long non-coding Approved 1p31.3 01p31.3 2014-05-22 2014-05-22 101927084 ENSG00000226891 OTTHUMG00000009307 NR_119383 +HGNC:50593 LINC01360 long intergenic non-protein coding RNA 1360 non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 2014-05-22 2014-05-22 101927295 ENSG00000233973 OTTHUMG00000009566 NR_110677 +HGNC:50595 LINC01361 long intergenic non-protein coding RNA 1361 non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 2014-05-22 2014-05-22 101927498 ENSG00000236268 OTTHUMG00000009770 NR_110633 +HGNC:50596 LINC01362 long intergenic non-protein coding RNA 1362 non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 2014-05-22 2014-05-22 103283057 ENSG00000230817 OTTHUMG00000009769 BC043539 XR_947535 +HGNC:50598 LINC01363 long intergenic non-protein coding RNA 1363 non-coding RNA RNA, long non-coding Approved 1q24.1 01q24.1 RBSG4 2014-05-22 2014-05-22 101928484 ENSG00000231605 OTTHUMG00000034431 NR_110811 +HGNC:50599 LINC01364 long intergenic non-protein coding RNA 1364 non-coding RNA RNA, long non-coding Approved 1p22.3 01p22.3 2014-05-22 2014-06-10 100505768 ENSG00000227290 OTTHUMG00000010252 NR_038324 +HGNC:50603 LINC01365 long intergenic non-protein coding RNA 1365 non-coding RNA RNA, long non-coding Approved 4q26 04q26 2014-05-22 2014-05-22 101927007 ENSG00000250772 OTTHUMG00000161337 NR_110660 +HGNC:27416 LINC01366 long intergenic non-protein coding RNA 1366 non-coding RNA RNA, long non-coding Approved 5q35.1 05q35.1 2014-05-22 2014-05-22 257358 ENSG00000235172 OTTHUMG00000163120 NR_026945 +HGNC:50608 LINC01370 long intergenic non-protein coding RNA 1370 non-coding RNA RNA, long non-coding Approved 20q12 20q12 HI-LNC25 Human Islet Long Non Coding RNA 25 2014-05-21 2014-11-19 100505663 ENSG00000237767 OTTHUMG00000032469 BI792917 NR_109936 23040067 617038 +HGNC:50623 LINC01372 long intergenic non-protein coding RNA 1372 non-coding RNA RNA, long non-coding Approved 7q11.21 07q11.21 2014-05-25 2014-05-29 101929736 ENSG00000235475 OTTHUMG00000156924 BC017910 NR_108104 +HGNC:50631 LINC01374 long intergenic non-protein coding RNA 1374 non-coding RNA RNA, long non-coding Approved 10q23.31 10q23.31 TCONS_00018278 2014-06-02 2014-06-02 106144595 ENSG00000280560 OTTHUMG00000189507 AI126223 24876753 +HGNC:50632 LINC01375 long intergenic non-protein coding RNA 1375 non-coding RNA RNA, long non-coding Approved 10q23.31 10q23.31 2014-06-01 2014-06-02 101926924 ENSG00000226159 OTTHUMG00000018728 AK093219 NR_110655 +HGNC:50637 LINC01376 long intergenic non-protein coding RNA 1376 non-coding RNA RNA, long non-coding Approved 2p24.2-p24.1 02p24.2-p24.1 2014-06-02 2016-10-11 400945 ENSG00000236204 OTTHUMG00000151766 AK123475 NR_135287 +HGNC:50642 LINC01377 long intergenic non-protein coding RNA 1377 non-coding RNA RNA, long non-coding Approved 5p15.33 05p15.33 2014-06-02 2014-06-02 102467074 ENSG00000249808 OTTHUMG00000161608 NR_104617 +HGNC:50645 LINC01378 long intergenic non-protein coding RNA 1378 non-coding RNA RNA, long non-coding Approved 4q26 04q26 2014-06-03 2014-06-03 103689918 ENSG00000236922 OTTHUMG00000059450 DB466276 NR_125757 +HGNC:50653 LINC01381 long intergenic non-protein coding RNA 1381 non-coding RNA RNA, long non-coding Approved 2p23.3 02p23.3 "TCONS_00002860|DADOT" DNMT3A antisense downstream transcript 2014-06-04 2014-06-26 2014-06-26 2014-06-26 106144568 ENSG00000230452 OTTHUMG00000152010 AW515644 NR_132378 +HGNC:50656 LINC01384 long intergenic non-protein coding RNA 1384 non-coding RNA RNA, long non-coding Approved 20p11.21 20p11.21 2014-06-04 2014-06-04 101929685 ENSG00000237396 OTTHUMG00000032044 NR_109883 +HGNC:50657 LINC01385 long intergenic non-protein coding RNA 1385 non-coding RNA RNA, long non-coding Approved 5q13.2 05q13.2 TCONS_00009424 2014-06-04 2014-06-04 106144542 ENSG00000251604 OTTHUMG00000162491 DB294021 +HGNC:50659 LINC01386 long intergenic non-protein coding RNA 1386 non-coding RNA RNA, long non-coding Approved 5q13.2 05q13.2 2014-06-04 2014-06-04 104355294 ENSG00000251324 OTTHUMG00000162499 AA969225 NR_126410 +HGNC:44660 LINC01387 long intergenic non-protein coding RNA 1387 non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 C18orf64 chromosome 18 open reading frame 64 2013-11-07 2014-06-04 2014-06-04 2014-11-19 100130480 ENSG00000265944 OTTHUMG00000178464 NR_120518 J3KSC0 +HGNC:50660 LINC01388 long intergenic non-protein coding RNA 1388 non-coding RNA RNA, long non-coding Approved 9p24.3 09p24.3 TCONS_l2_00029888 2014-06-04 2014-06-04 101929179 ENSG00000231808 OTTHUMG00000019424 AW873619 XR_929385 +HGNC:50661 LINC01389 long intergenic non-protein coding RNA 1389 non-coding RNA RNA, long non-coding Approved 1p33 01p33 2014-06-04 2014-06-04 102724077 ENSG00000225762 OTTHUMG00000007965 BX102452 NR_126355 +HGNC:50666 LINC01391 long intergenic non-protein coding RNA 1391 non-coding RNA RNA, long non-coding Approved 3q22.3 03q22.3 2014-06-05 2014-06-05 103344930 ENSG00000244578 OTTHUMG00000159892 AK128202 NR_121649 +HGNC:50668 LINC01392 long intergenic non-protein coding RNA 1392 non-coding RNA RNA, long non-coding Approved 7q31.2 07q31.2 2014-06-05 2014-06-05 104355291 ENSG00000233607 OTTHUMG00000133696 DA452608 NR_126407 +HGNC:50669 LINC01393 long intergenic non-protein coding RNA 1393 non-coding RNA RNA, long non-coding Approved 7q31.2 07q31.2 2014-06-05 2014-06-05 102724386 ENSG00000225535 OTTHUMG00000065346 BC022431 NR_120521 +HGNC:50670 LINC01394 long intergenic non-protein coding RNA 1394 non-coding RNA RNA, long non-coding Approved 6p25.3 06p25.3 TCONS_00012639 2014-06-05 2014-06-05 106144586 ENSG00000281809 OTTHUMG00000189510 AI698698 XR_926374 +HGNC:50674 LINC01395 long intergenic non-protein coding RNA 1395 non-coding RNA RNA, long non-coding Approved 11q24.3 11q24.3 TCONS_00019178 2014-06-05 2014-06-05 101929557 ENSG00000281097 OTTHUMG00000189543 BC038579 NR_120582 +HGNC:50675 LINC01396 long intergenic non-protein coding RNA 1396 non-coding RNA RNA, long non-coding Approved 4p16.2 04p16.2 2014-06-05 2014-06-05 103695434 ENSG00000273396 OTTHUMG00000186235 AW195733 NR_125765 +HGNC:50677 LINC01397 long intergenic non-protein coding RNA 1397 non-coding RNA RNA, long non-coding Approved 1p13.3 01p13.3 2014-06-05 2014-06-05 104355139 ENSG00000258673 OTTHUMG00000170609 DA779101 NR_126382 +HGNC:50678 LINC01398 long intergenic non-protein coding RNA 1398 non-coding RNA RNA, long non-coding Approved 1p33 01p33 2014-06-05 2014-06-05 101929651 ENSG00000224863 OTTHUMG00000007814 BC021746 NR_121680 +HGNC:50680 LINC01399 long intergenic non-protein coding RNA 1399 non-coding RNA RNA, long non-coding Approved 22q12.3 22q12.3 2014-06-05 2014-06-05 104310353 ENSG00000233080 OTTHUMG00000150957 CB111670 NR_126356 +HGNC:50681 LINC01400 long intergenic non-protein coding RNA 1400 non-coding RNA RNA, long non-coding Approved 9p13.2 09p13.2 TCONS_00015805 2014-06-05 2014-06-05 107080554 ENSG00000232920 OTTHUMG00000019909 AL559860 +HGNC:50685 LINC01402 long intergenic non-protein coding RNA 1402 non-coding RNA RNA, long non-coding Approved Xq24 Xq24 TCONS_00017087 2014-06-05 2015-03-11 104797536 ENSG00000228139 OTTHUMG00000022291 AA360663 NR_126557 +HGNC:50688 LINC01405 long intergenic non-protein coding RNA 1405 non-coding RNA RNA, long non-coding Approved 12q24.11 12q24.11 2014-06-05 2014-06-05 100131138 ENSG00000185847 OTTHUMG00000169536 AJ276555 NR_036513 +HGNC:50702 LINC01410 long intergenic non-protein coding RNA 1410 non-coding RNA RNA, long non-coding Approved 9q13 09q13 2014-06-09 2014-06-09 103352539 ENSG00000238113 OTTHUMG00000013291 CR627148 NR_121647 +HGNC:50703 LINC01411 long intergenic non-protein coding RNA 1411 non-coding RNA RNA, long non-coding Approved 5q35.2 05q35.2 RP11-267A15.1 2014-06-09 2014-11-26 101928176 ENSG00000249306 OTTHUMG00000163128 BM051440 NR_125806 25422238 +HGNC:50704 LINC01412 long intergenic non-protein coding RNA 1412 non-coding RNA RNA, long non-coding Approved 2q22.3 02q22.3 2014-06-10 2014-06-10 101928455 ENSG00000232606 OTTHUMG00000153876 NR_110570 +HGNC:50705 LINC01413 long intergenic non-protein coding RNA 1413 non-coding RNA RNA, long non-coding Approved 15q21.3 15q21.3 2014-06-10 2014-06-10 101928611 ENSG00000260172 OTTHUMG00000176406 NR_120337 +HGNC:50709 LINC01415 long intergenic non-protein coding RNA 1415 non-coding RNA RNA, long non-coding Approved 18q21.2 18q21.2 TCONS_00026208 2014-06-11 2014-06-11 100132501 ENSG00000267325 OTTHUMG00000179871 AK127787 XR_935491 +HGNC:51645 LINC01416 long intergenic non-protein coding RNA 1416 non-coding RNA RNA, long non-coding Approved 18q21.2 18q21.2 2015-04-09 2015-04-09 101927273 ENSG00000260930 OTTHUMG00000176192 NR_110755 +HGNC:50712 LINC01419 long intergenic non-protein coding RNA 1419 non-coding RNA RNA, long non-coding Approved 8q21.13 08q21.13 TCONS_00014497 2014-06-11 2014-06-11 103352670 ENSG00000253898 OTTHUMG00000164609 BC038578 NR_122034 +HGNC:50713 LINC01420 long intergenic non-protein coding RNA 1420 other unknown Approved Xp11.21 Xp11.21 2014-06-06 2016-07-20 550643 ENSG00000204272 OTTHUMG00000021676 BC048131 NR_015367 +HGNC:50728 LINC01422 long intergenic non-protein coding RNA 1422 non-coding RNA RNA, long non-coding Approved 22q12.1 22q12.1 2014-06-13 2014-06-13 101929539 ENSG00000223704 OTTHUMG00000150979 NR_110540 +HGNC:50732 LINC01423 long intergenic non-protein coding RNA 1423 non-coding RNA RNA, long non-coding Approved 21q22.2 21q22.2 2014-06-13 2016-10-05 102724678 ENSG00000231231 OTTHUMG00000090768 "AI752367|DA464432" NR_110545 +HGNC:40558 LINC01424 long intergenic non-protein coding RNA 1424 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 2014-06-13 2014-11-19 101928689 ENSG00000236519 OTTHUMG00000090255 NR_109928 +HGNC:50733 LINC01425 long intergenic non-protein coding RNA 1425 non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 2014-06-13 2014-06-13 101927821 ENSG00000233997 OTTHUMG00000078125 NR_109958 +HGNC:50734 LINC01426 long intergenic non-protein coding RNA 1426 non-coding RNA RNA, long non-coding Approved 21q22.12 21q22.12 2014-06-13 2014-06-13 100506385 ENSG00000234380 OTTHUMG00000086233 NR_038885 +HGNC:50737 LINC01427 long intergenic non-protein coding RNA 1427 non-coding RNA RNA, long non-coding Approved 20p11.22 20p11.22 2014-06-13 2014-06-13 101929663 ENSG00000225321 OTTHUMG00000032039 NR_110615 +HGNC:50738 LINC01428 long intergenic non-protein coding RNA 1428 non-coding RNA RNA, long non-coding Approved 20p12.3 20p12.3 2014-06-13 2014-06-13 101929265 ENSG00000228888 OTTHUMG00000031836 NR_110609 +HGNC:50741 LINC01429 long intergenic non-protein coding RNA 1429 non-coding RNA RNA, long non-coding Approved 20q13.2 20q13.2 2014-06-13 2014-06-13 101927678 ENSG00000227964 OTTHUMG00000134283 NR_110016 +HGNC:50742 LINC01430 long intergenic non-protein coding RNA 1430 non-coding RNA RNA, long non-coding Approved 20q13.12 20q13.12 2014-06-13 2014-06-13 101927242 ENSG00000237907 OTTHUMG00000032534 NR_109893 +HGNC:50744 LINC01431 long intergenic non-protein coding RNA 1431 non-coding RNA RNA, long non-coding Approved 20p11.21 20p11.21 2014-06-13 2014-06-13 100505683 ENSG00000232645 OTTHUMG00000032063 NR_109884 +HGNC:50745 LINC01432 long intergenic non-protein coding RNA 1432 non-coding RNA RNA, long non-coding Approved 20p11.22 20p11.22 2014-06-13 2014-06-13 100270679 ENSG00000234435 OTTHUMG00000032036 NR_038394 +HGNC:50746 LINC01433 long intergenic non-protein coding RNA 1433 non-coding RNA RNA, long non-coding Approved 20p13 20p13 LOC728228 2014-06-13 2015-04-08 728228 ENSG00000230176 OTTHUMG00000031776 NR_033917 25820656 +HGNC:50753 LINC01435 long intergenic non-protein coding RNA 1435 non-coding RNA RNA, long non-coding Approved 10q25.1 10q25.1 "RP11-215N21.1|TCONS_00018040" 2014-06-14 2014-06-17 103695365 ENSG00000229981 OTTHUMG00000019020 "BX116650|AA406208" NR_125760 24932682 +HGNC:50754 LINC01436 long intergenic non-protein coding RNA 1436 non-coding RNA RNA, long non-coding Approved 21q22.12 21q22.12 AP000688.8 2014-06-14 2014-06-17 100996609 ENSG00000231106 OTTHUMG00000086463 NR_110419 24932682 +HGNC:50757 LINC01438 long intergenic non-protein coding RNA 1438 non-coding RNA RNA, long non-coding Approved 4q25 04q25 TCONS_00007593 2014-06-17 2014-06-17 106144527 ENSG00000249519 OTTHUMG00000161115 DA725631 +HGNC:50762 LINC01440 long intergenic non-protein coding RNA 1440 non-coding RNA RNA, long non-coding Approved 20q13.2 20q13.2 2014-06-17 2014-06-17 102723578 ENSG00000235166 OTTHUMG00000032780 BX107747 NR_110629 +HGNC:50763 LINC01441 long intergenic non-protein coding RNA 1441 non-coding RNA RNA, long non-coding Approved 20q13.2 20q13.2 2014-06-17 2014-06-17 101927796 ENSG00000224008 OTTHUMG00000134311 NR_110064 +HGNC:50764 LINC01442 long intergenic non-protein coding RNA 1442 non-coding RNA RNA, long non-coding Approved 13q21.2 13q21.2 2014-06-17 2014-06-17 103456507 ENSG00000227510 OTTHUMG00000017010 "AK097816|AA393276" XR_001749887 +HGNC:50768 LINC01443 long intergenic non-protein coding RNA 1443 non-coding RNA RNA, long non-coding Approved 18p11.21 18p11.21 2014-06-17 2014-06-17 400644 ENSG00000266554 OTTHUMG00000178811 NR_104164 +HGNC:50769 LINC01444 long intergenic non-protein coding RNA 1444 non-coding RNA RNA, long non-coding Approved 18p11.21 18p11.21 2014-06-17 2014-06-17 101927642 ENSG00000264301 OTTHUMG00000178812 NR_110783 +HGNC:50771 LINC01445 long intergenic non-protein coding RNA 1445 non-coding RNA RNA, long non-coding Approved 7p11.2 07p11.2 2014-06-18 2014-06-18 102723605 ENSG00000231427 OTTHUMG00000156067 BF966467 NR_120516 +HGNC:50773 LINC01446 long intergenic non-protein coding RNA 1446 non-coding RNA RNA, long non-coding Approved 7p12.1 07p12.1 FLJ45974 2014-06-18 2014-06-18 401337 ENSG00000205628 OTTHUMG00000156039 NR_038371 +HGNC:50783 LINC01447 long intergenic non-protein coding RNA 1447 non-coding RNA RNA, long non-coding Approved 7p12.3 07p12.3 2014-06-18 2014-06-18 101929086 ENSG00000236078 OTTHUMG00000155554 NR_108090 +HGNC:50790 LINC01448 long intergenic non-protein coding RNA 1448 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 2014-06-18 2014-06-18 101928795 ENSG00000238284 OTTHUMG00000155126 NR_110833 +HGNC:50791 LINC01449 long intergenic non-protein coding RNA 1449 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 2014-06-18 2014-06-18 101928773 ENSG00000224017 OTTHUMG00000155115 NR_110832 +HGNC:50792 LINC01450 long intergenic non-protein coding RNA 1450 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 2014-06-18 2014-06-18 101928744 ENSG00000232458 OTTHUMG00000155113 NR_110831 +HGNC:48599 LINC01451 long intergenic non-protein coding RNA 1451 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 HCCAT4 hepatocellular carcinoma associated transcript 4 (non-protein coding) 2013-05-14 2014-06-20 2014-06-20 2014-06-20 401561 ENSG00000279141 OTTHUMG00000189535 "AY129027|CA503198" NR_135288 +HGNC:50545 LINC01455 long intergenic non-protein coding RNA 1455 non-coding RNA RNA, long non-coding Approved 5q14.1 05q14.1 TCONS_00009433 MDONA MTX3 downstream antisense RNA 2014-05-20 2014-06-26 2014-06-26 2014-06-26 105616916 ENSG00000250888 OTTHUMG00000162549 DB088210 NR_131226 +HGNC:50846 LINC01456 long intergenic non-protein coding RNA 1456 non-coding RNA RNA, long non-coding Approved Xp22.13 Xp22.13 2014-06-26 2014-06-26 105373144 ENSG00000225882 OTTHUMG00000021210 BE792552 NR_133641 +HGNC:50858 LINC01460 long intergenic non-protein coding RNA 1460 non-coding RNA RNA, long non-coding Approved 2p23.2 02p23.2 2014-07-04 2014-07-08 100129995 ENSG00000205334 OTTHUMG00000151945 AK124439 NR_135200 +HGNC:50859 LINC01461 long intergenic non-protein coding RNA 1461 non-coding RNA RNA, long non-coding Approved 1p22.3 01p22.3 TCONS_00001552 2014-07-08 2014-07-08 103695366 DA091614 NR_125761 +HGNC:26364 LINC01465 long intergenic non-protein coding RNA 1465 non-coding RNA RNA, long non-coding Approved 12q14.1 12q14.1 FLJ25590 C12orf61 chromosome 12 open reading frame 61 2006-02-17 2014-07-17 2014-07-17 2014-11-19 283416 ENSG00000221949 OTTHUMG00000169983 AK098456 NR_121682 Q8N7H1 +HGNC:50911 LINC01467 long intergenic non-protein coding RNA 1467 non-coding RNA RNA, long non-coding Approved 14q31.1 14q31.1 2014-07-28 2014-07-28 101928559 ENSG00000258977 OTTHUMG00000171398 NR_110074 +HGNC:50913 LINC01468 long intergenic non-protein coding RNA 1468 non-coding RNA RNA, long non-coding Approved 10q21.1 10q21.1 lnc-MBL2-4 2014-07-28 2014-08-14 101928687 ENSG00000231131 OTTHUMG00000018252 NR_120641 25045670 +HGNC:51105 LINC01470 long intergenic non-protein coding RNA 1470 non-coding RNA RNA, long non-coding Approved 5q33.1 05q33.1 2014-07-29 2014-07-29 101927134 ENSG00000249484 OTTHUMG00000163486 NR_109877 +HGNC:51106 LINC01471 long intergenic non-protein coding RNA 1471 non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 2014-07-29 2014-07-29 101927149 ENSG00000239921 OTTHUMG00000159643 NR_125397 +HGNC:51109 LINC01473 long intergenic non-protein coding RNA 1473 non-coding RNA RNA, long non-coding Approved 2q32.1 02q32.1 2014-07-29 2014-07-29 101927217 ENSG00000237877 OTTHUMG00000154250 NR_110218 +HGNC:51111 LINC01474 long intergenic non-protein coding RNA 1474 non-coding RNA RNA, long non-coding Approved 9q21.13 09q21.13 2014-07-29 2014-07-29 101927258 ENSG00000236849 OTTHUMG00000020015 NR_121181 +HGNC:51113 LINC01475 long intergenic non-protein coding RNA 1475 non-coding RNA RNA, long non-coding Approved 10q24.2 10q24.2 2014-07-29 2014-07-29 101927324 ENSG00000257582 OTTHUMG00000170536 NR_120618 +HGNC:51117 LINC01476 long intergenic non-protein coding RNA 1476 non-coding RNA RNA, long non-coding Approved 17q22-q23.1 17q22-q23.1 2014-07-30 2016-10-11 101927728 ENSG00000265313 OTTHUMG00000179382 NR_110813 +HGNC:51119 LINC01477 long intergenic non-protein coding RNA 1477 non-coding RNA RNA, long non-coding Approved 18q12.3 18q12.3 2014-07-30 2014-07-30 101927900 ENSG00000261715 OTTHUMG00000176177 NR_110791 +HGNC:51121 LINC01478 long intergenic non-protein coding RNA 1478 non-coding RNA RNA, long non-coding Approved 18q12.3 18q12.3 2014-07-30 2014-07-30 101927921 ENSG00000267337 OTTHUMG00000178347 NR_110792 +HGNC:51123 LINC01479 long intergenic non-protein coding RNA 1479 non-coding RNA RNA, long non-coding Approved 12q15 12q15 2014-07-30 2014-07-30 101927922 ENSG00000255772 OTTHUMG00000169106 NR_120456 +HGNC:51124 LINC01480 long intergenic non-protein coding RNA 1480 non-coding RNA RNA, long non-coding Approved 19q13.2 19q13.2 2014-07-30 2014-07-30 101927931 ENSG00000270164 OTTHUMG00000184156 NR_110724 +HGNC:51126 LINC01481 long intergenic non-protein coding RNA 1481 non-coding RNA RNA, long non-coding Approved 12q15 12q15 2014-07-30 2014-07-30 101928062 ENSG00000257613 OTTHUMG00000169448 NR_120459 +HGNC:51128 LINC01482 long intergenic non-protein coding RNA 1482 non-coding RNA RNA, long non-coding Approved 17q24.2 17q24.2 2014-07-30 2014-07-30 101928104 ENSG00000267659 OTTHUMG00000180190 NR_110825 +HGNC:51130 LINC01483 long intergenic non-protein coding RNA 1483 non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 2014-07-30 2014-07-30 101928122 ENSG00000227517 OTTHUMG00000132249 NR_109971 +HGNC:51136 LINC01484 long intergenic non-protein coding RNA 1484 non-coding RNA RNA, long non-coding Approved 5q35.2 05q35.2 2014-07-30 2014-07-30 101928136 ENSG00000253686 OTTHUMG00000163343 NR_108027 +HGNC:51138 LINC01485 long intergenic non-protein coding RNA 1485 non-coding RNA RNA, long non-coding Approved 5q35.2 05q35.2 2014-07-30 2014-07-30 101928154 ENSG00000254211 OTTHUMG00000163337 NR_108028 +HGNC:51137 LINC01486 long intergenic non-protein coding RNA 1486 non-coding RNA RNA, long non-coding Approved 12q24.11 12q24.11 TCONS_00021407 2014-07-30 2014-07-30 101928138 ENSG00000256560 OTTHUMG00000169251 NR_120462 +HGNC:51139 LINC01487 long intergenic non-protein coding RNA 1487 non-coding RNA RNA, long non-coding Approved 3q25.2 03q25.2 2014-07-30 2014-07-30 101928190 ENSG00000241336 OTTHUMG00000158465 NR_125399 +HGNC:51144 LINC01488 long intergenic non-protein coding RNA 1488 non-coding RNA RNA, long non-coding Approved 11q13.3 11q13.3 2014-07-30 2014-07-30 101928292 NR_120542 +HGNC:51145 LINC01489 long intergenic non-protein coding RNA 1489 non-coding RNA RNA, long non-coding Approved 12p12.3 12p12.3 2014-07-30 2014-07-30 101928340 ENSG00000255727 OTTHUMG00000168744 NR_120466 +HGNC:51146 LINC01490 long intergenic non-protein coding RNA 1490 non-coding RNA RNA, long non-coding Approved 12q21.31 12q21.31 2014-07-30 2014-07-30 101928420 ENSG00000257741 OTTHUMG00000170167 NR_120468 +HGNC:51148 LINC01491 long intergenic non-protein coding RNA 1491 non-coding RNA RNA, long non-coding Approved 15q21.1 15q21.1 2014-07-30 2014-07-30 101928442 ENSG00000259572 OTTHUMG00000172113 NR_120336 +HGNC:51149 LINC01492 long intergenic non-protein coding RNA 1492 non-coding RNA RNA, long non-coding Approved 9q31.1 09q31.1 2014-07-30 2014-07-30 101928496 ENSG00000225564 OTTHUMG00000020399 NR_121578 +HGNC:51150 LINC01493 long intergenic non-protein coding RNA 1493 non-coding RNA RNA, long non-coding Approved 11p12 11p12 2014-07-30 2014-07-30 101928536 ENSG00000254562 OTTHUMG00000166467 NR_120553 +HGNC:51152 LINC01494 long intergenic non-protein coding RNA 1494 non-coding RNA RNA, long non-coding Approved 2q35 02q35 2014-07-30 2014-07-30 101928537 ENSG00000228135 OTTHUMG00000154664 NR_110238 +HGNC:51161 LINC01495 long intergenic non-protein coding RNA 1495 non-coding RNA RNA, long non-coding Approved 11p14.3 11p14.3 2014-07-30 2014-07-30 102723378 ENSG00000255323 OTTHUMG00000166054 NR_120583 +HGNC:51162 LINC01496 long intergenic non-protein coding RNA 1496 non-coding RNA RNA, long non-coding Approved Xp11.22 Xp11.22 2014-07-30 2014-07-30 102723426 ENSG00000234766 OTTHUMG00000021535 NR_110654 +HGNC:51163 LINC01497 long intergenic non-protein coding RNA 1497 non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 2014-07-30 2014-07-30 102723487 ENSG00000237560 OTTHUMG00000132247 NR_110874 +HGNC:51164 LINC01498 long intergenic non-protein coding RNA 1498 non-coding RNA RNA, long non-coding Approved 12q23.3 12q23.3 2014-07-30 2014-07-30 102723562 ENSG00000247213 OTTHUMG00000169577 NR_120483 +HGNC:51165 LINC01499 long intergenic non-protein coding RNA 1499 non-coding RNA RNA, long non-coding Approved 11p12 11p12 2014-07-30 2014-07-30 102723644 ENSG00000255171 OTTHUMG00000166376 NR_120584 +HGNC:51166 LINC01500 long intergenic non-protein coding RNA 1500 non-coding RNA RNA, long non-coding Approved 14q23.1 14q23.1 2014-07-30 2014-07-30 102723742 ENSG00000258583 OTTHUMG00000171092 NR_110547 +HGNC:27988 LINC01501 long intergenic non-protein coding RNA 1501 non-coding RNA RNA, long non-coding Approved 9q22.2 09q22.2 2014-07-31 2014-07-31 340515 ENSG00000229613 OTTHUMG00000020197 BC040625 NR_034157 12477932 +HGNC:51183 LINC01502 long intergenic non-protein coding RNA 1502 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 2014-08-01 2014-08-01 100130954 ENSG00000237339 OTTHUMG00000020912 AK098241 NR_034016 +HGNC:51184 LINC01503 long intergenic non-protein coding RNA 1503 non-coding RNA RNA, long non-coding Approved 9q34.11 09q34.11 lnc-PPP2R4-5 2014-08-01 2014-08-14 100506119 ENSG00000233901 OTTHUMG00000020778 NR_120685 25045670 +HGNC:51185 LINC01504 long intergenic non-protein coding RNA 1504 non-coding RNA RNA, long non-coding Approved 9q21.13 09q21.13 2014-08-01 2014-08-01 100507540 ENSG00000225434 OTTHUMG00000020007 AK095210 NR_110952 +HGNC:51186 LINC01505 long intergenic non-protein coding RNA 1505 non-coding RNA RNA, long non-coding Approved 9q31.2 09q31.2 2014-08-01 2014-08-01 100996590 ENSG00000234229 OTTHUMG00000020435 AK093363 NR_104145 +HGNC:51187 LINC01506 long intergenic non-protein coding RNA 1506 non-coding RNA RNA, long non-coding Approved 9q21.11 09q21.11 2014-08-01 2014-08-01 101927015 ENSG00000234506 OTTHUMG00000019968 NR_109769 +HGNC:51189 LINC01507 long intergenic non-protein coding RNA 1507 non-coding RNA RNA, long non-coding Approved 9q21.31 09q21.31 XLOC_000303 2014-08-01 2015-09-18 101927477 ENSG00000230945 OTTHUMG00000020075 NR_121212 26328256 +HGNC:51190 LINC01508 long intergenic non-protein coding RNA 1508 non-coding RNA RNA, long non-coding Approved 9q22.2 09q22.2 2014-08-01 2014-08-01 101927873 ENSG00000231107 OTTHUMG00000020194 NR_109795 +HGNC:51193 LINC01509 long intergenic non-protein coding RNA 1509 non-coding RNA RNA, long non-coding Approved 9q31.2 09q31.2 2014-08-01 2014-08-01 101928720 ENSG00000226825 OTTHUMG00000020447 NR_121581 +HGNC:51196 LINC01510 long intergenic non-protein coding RNA 1510 non-coding RNA RNA, long non-coding Approved 7q31.2 07q31.2 2014-08-01 2014-08-01 100996266 ENSG00000231210 OTTHUMG00000064097 NR_120506 +HGNC:51200 LINC01511 long intergenic non-protein coding RNA 1511 non-coding RNA RNA, long non-coding Approved 5p15.33 05p15.33 RP11-325I22.2 2014-08-06 2015-10-22 100506791 ENSG00000250584 OTTHUMG00000161736 BC034612 NR_125810 25085781 +HGNC:51201 LINC01512 long intergenic non-protein coding RNA 1512 non-coding RNA RNA, long non-coding Approved 6p21.1 06p21.1 "LOC100132354|TCONS_00011120|HI-LNC77" Human Islet Long Non Coding RNA 77 2014-08-07 2014-11-19 100132354 AK095548 NR_024478 "25089627|23040067" +HGNC:51202 LINC01513 long intergenic non-protein coding RNA 1513 non-coding RNA RNA, long non-coding Approved 5p15.2 05p15.2 "RP11-1C1.7|TCONS_00009352" 2014-08-07 2014-08-07 ENSG00000246016 OTTHUMG00000162053 BM975707 25089627 +HGNC:51207 LINC01514 long intergenic non-protein coding RNA 1514 non-coding RNA RNA, long non-coding Approved 10q24.31 10q24.31 2014-08-07 2014-08-07 101927396 ENSG00000237579 OTTHUMG00000018926 BC038784 NR_120620 +HGNC:51210 LINC01515 long intergenic non-protein coding RNA 1515 non-coding RNA RNA, long non-coding Approved 10q21.3 10q21.3 2014-08-07 2014-08-07 101928913 ENSG00000228065 OTTHUMG00000018330 NR_120647 +HGNC:51211 LINC01516 long intergenic non-protein coding RNA 1516 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 2014-08-07 2014-08-07 101929025 ENSG00000231422 OTTHUMG00000017831 BC042983 NR_120649 +HGNC:51212 LINC01517 long intergenic non-protein coding RNA 1517 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 2014-08-07 2014-08-07 101929218 ENSG00000232624 OTTHUMG00000017877 HY052409 NR_120652 +HGNC:51216 LINC01518 long intergenic non-protein coding RNA 1518 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 2014-08-07 2014-08-07 101929397 ENSG00000233515 OTTHUMG00000018017 AK123067 NR_120659 +HGNC:51217 LINC01519 long intergenic non-protein coding RNA 1519 non-coding RNA RNA, long non-coding Approved 10q23.1 10q23.1 2014-08-07 2014-08-07 101929624 ENSG00000237267 OTTHUMG00000018644 AK097624 NR_120667 +HGNC:51218 LINC01520 long intergenic non-protein coding RNA 1520 non-coding RNA RNA, long non-coding Approved 10q23.1 10q23.1 2014-08-07 2014-08-07 101929684 ENSG00000230962 OTTHUMG00000018647 AL117638 NR_120671 +HGNC:26029 LINC01521 long intergenic non-protein coding RNA 1521 non-coding RNA RNA, long non-coding Approved 22q12.2 22q12.2 2014-08-08 2014-09-04 54944 ENSG00000213888 OTTHUMG00000187474 BC004550 NR_120386 +HGNC:51224 LINC01522 long intergenic non-protein coding RNA 1522 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-08-08 2014-08-08 101927457 ENSG00000237423 OTTHUMG00000032678 NR_110027 +HGNC:51225 LINC01523 long intergenic non-protein coding RNA 1523 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 2014-08-08 2014-08-08 101060004 ENSG00000229522 OTTHUMG00000032679 NR_109942 +HGNC:51228 LINC01524 long intergenic non-protein coding RNA 1524 non-coding RNA RNA, long non-coding Approved 20q13.2 20q13.2 2014-08-08 2015-01-09 101927700 ENSG00000234948 OTTHUMG00000134297 "CD109474|BC045652" NR_110038 +HGNC:51264 LINC01525 long intergenic non-protein coding RNA 1525 non-coding RNA RNA, long non-coding Approved 1p12 01p12 lnc-MAN1A2-1 2014-08-14 2014-08-14 104355292 ENSG00000235202 OTTHUMG00000012147 "BX109912|AW590930|AA909723" NR_126408 25045670 +HGNC:51265 LINC01526 long intergenic non-protein coding RNA 1526 non-coding RNA RNA, long non-coding Approved 6q14.1 06q14.1 Lnc-FAM46A-1 2014-08-14 2014-08-14 101928770 ENSG00000224995 OTTHUMG00000015099 BC038576 NR_126363 25045670 +HGNC:51266 LINC01527 long intergenic non-protein coding RNA 1527 non-coding RNA RNA, long non-coding Approved 1q21.3 01q21.3 lnc-SPRR2D-1 2014-08-14 2014-08-14 101927988 ENSG00000224308 OTTHUMG00000012449 BC042056 XR_241125 25045670 +HGNC:51268 LINC01529 long intergenic non-protein coding RNA 1529 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2014-08-15 2014-08-15 644050 ENSG00000225872 OTTHUMG00000048120 AK055260 NR_104176 +HGNC:44320 LINC01530 long intergenic non-protein coding RNA 1530 non-coding RNA RNA, long non-coding Approved 19q13.41 19q13.41 FLJ30403 2014-08-15 2014-08-15 729975 "AK054965|CA867516|DA060240|DB478715" NR_034159 +HGNC:51270 LINC01531 long intergenic non-protein coding RNA 1531 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2014-08-22 2014-08-22 100128682 ENSG00000205786 OTTHUMG00000048095 AK128099 NR_040046 +HGNC:51272 LINC01532 long intergenic non-protein coding RNA 1532 non-coding RNA RNA, long non-coding Approved 19q12 19q12 2014-08-22 2014-08-22 100505835 ENSG00000267014 OTTHUMG00000181996 AK055100 NR_040036 +HGNC:51274 LINC01533 long intergenic non-protein coding RNA 1533 non-coding RNA RNA, long non-coding Approved 19q13.11 19q13.11 2014-08-22 2014-08-22 100996665 ENSG00000267779 OTTHUMG00000180234 NR_110673 +HGNC:51281 LINC01534 long intergenic non-protein coding RNA 1534 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2014-08-28 2014-08-28 101927621 ENSG00000225975 OTTHUMG00000048158 NR_110708 +HGNC:51282 LINC01535 long intergenic non-protein coding RNA 1535 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2014-08-28 2014-08-28 101927667 ENSG00000226686 OTTHUMG00000048167 NR_110720 +HGNC:51301 LINC01537 long intergenic non-protein coding RNA 1537 non-coding RNA RNA, long non-coding Approved 11q13.4 11q13.4 RP11-169D4.1-001 2014-09-25 2014-09-25 101928555 ENSG00000227467 OTTHUMG00000167927 AL832797 NR_126364 25243407 +HGNC:51306 LINC01538 long intergenic non-protein coding RNA 1538 non-coding RNA RNA, long non-coding Approved 18q22.1 18q22.1 TCONS_00026184 2014-09-26 2014-09-26 400654 ENSG00000266952 OTTHUMG00000180127 BC042493 NR_033983 +HGNC:51307 LINC01539 long intergenic non-protein coding RNA 1539 non-coding RNA RNA, long non-coding Approved 18q21.2 18q21.2 2014-09-26 2014-09-26 100505474 ENSG00000267712 OTTHUMG00000180037 "AK057336|AK058169" NR_040025 +HGNC:51309 LINC01541 long intergenic non-protein coding RNA 1541 non-coding RNA RNA, long non-coding Approved 18q22.3 18q22.3 2014-09-26 2014-09-26 100505776 ENSG00000260676 OTTHUMG00000176200 BX648957 NR_038325 +HGNC:51310 LINC01543 long intergenic non-protein coding RNA 1543 non-coding RNA RNA, long non-coding Approved 18q11.2 18q11.2 TCONS_00026302 2014-09-26 2014-09-26 100506787 ENSG00000263862 OTTHUMG00000179433 HY185322 NR_110762 +HGNC:51312 LINC01544 long intergenic non-protein coding RNA 1544 non-coding RNA RNA, long non-coding Approved 18q21.33 18q21.33 TCONS_00026194 2014-09-26 2014-09-26 100996669 ENSG00000260440 OTTHUMG00000176195 AK054836 NR_103449 +HGNC:17986 LINC01545 long intergenic non-protein coding RNA 1545 non-coding RNA RNA, long non-coding Approved Xp11.3 Xp11.3 OTTHUMG00000021429 CXorf31 chromosome X open reading frame 31 2006-06-30 2014-10-01 2014-10-01 2014-11-19 724087 ENSG00000204904 OTTHUMG00000021429 BC038573 NR_046101 Q5VT33 +HGNC:27336 LINC01546 long intergenic non-protein coding RNA 1546 non-coding RNA RNA, long non-coding Approved Xp22.33 Xp22.33 CXorf28 chromosome X open reading frame 28 2006-06-30 2014-10-01 2014-10-01 2014-11-19 100129464 ENSG00000228459 OTTHUMG00000021082 NR_038428 A6NGU7 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf28 +HGNC:15707 LINC01547 long intergenic non-protein coding RNA 1547 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "C21orf69|C21orf67" "chromosome 21 open reading frame 69|chromosome 21 open reading frame 67" 2001-05-23 2014-10-01 2014-10-01 2016-09-26 84536 ENSG00000183250 OTTHUMG00000090294 AY040088 NR_027128 P58512 11707072 +HGNC:1296 LINC01548 long intergenic non-protein coding RNA 1548 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 C21orf54 chromosome 21 open reading frame 54 2000-05-23 2014-10-01 2014-10-01 2014-10-01 728409 ENSG00000229086 OTTHUMG00000065061 NR_024102 A6NM66 +HGNC:1277 LINC01549 long intergenic non-protein coding RNA 1549 non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 C21orf37 chromosome 21 open reading frame 37 2000-05-23 2014-10-01 2014-10-01 2014-11-19 100505929 ENSG00000232560 OTTHUMG00000074397 NR_037585 A6NIU2 +HGNC:20111 LINC01550 long intergenic non-protein coding RNA 1550 non-coding RNA RNA, long non-coding Approved 14q32.2 14q32.2 C14orf64 chromosome 14 open reading frame 64 2002-12-18 2014-10-01 2014-10-01 2014-10-01 388011 ENSG00000246223 OTTHUMG00000171470 BC043585 NR_015430 +HGNC:19828 LINC01551 long intergenic non-protein coding RNA 1551 non-coding RNA RNA, long non-coding Approved 14q12 14q12 C14orf23 chromosome 14 open reading frame 23 2002-11-27 2014-10-01 2014-10-01 2016-10-05 387978 ENSG00000186960 OTTHUMG00000029410 NR_026731 Q86U37 +HGNC:23524 LINC01553 long intergenic non-protein coding RNA 1553 non-coding RNA RNA, long non-coding Approved 10q21.2 10q21.2 AC023904.2 C10orf40 chromosome 10 open reading frame 40 2004-05-27 2014-10-01 2014-10-01 2016-10-05 283025 ENSG00000235931 OTTHUMG00000018285 BC038741 NR_024340 A4QN01 12477932 +HGNC:24687 LINC01554 long intergenic non-protein coding RNA 1554 non-coding RNA RNA, long non-coding Approved 5q15 05q15 "FLJ38821|FIS" C5orf27 chromosome 5 open reading frame 27 2006-08-08 2014-10-01 2014-10-01 2014-11-19 202299 ENSG00000236882 OTTHUMG00000122084 AY168789 NR_026936 Q52M75 +HGNC:26647 LINC01555 long intergenic non-protein coding RNA 1555 non-coding RNA RNA, long non-coding Approved 1p22.3 01p22.3 FLJ35487 C1orf180 chromosome 1 open reading frame 180 2005-07-26 2014-10-01 2014-10-01 2014-11-19 439927 ENSG00000180869 OTTHUMG00000009923 AK092806 NR_027379 Q8NAE3 +HGNC:21195 LINC01556 long intergenic non-protein coding RNA 1556 non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 dJ25J6.5 C6orf100 chromosome 6 open reading frame 100 2003-11-26 2014-10-01 2014-10-01 2014-10-01 729583 ENSG00000204709 OTTHUMG00000031148 NR_103538 Q5JQF7 +HGNC:21235 LINC01558 long intergenic non-protein coding RNA 1558 non-coding RNA RNA, long non-coding Approved 6q27 06q27 "HGC6.2|dJ431P23.4" "C6orf123|LINC01557" "chromosome 6 open reading frame 123|long intergenic non-protein coding RNA 1557" 2003-05-29 2014-10-01 2014-10-01 2014-11-19 26238 ENSG00000146521 OTTHUMG00000016030 NR_026773 Q9Y6Z2 10382971 +HGNC:26598 LINC01559 long intergenic non-protein coding RNA 1559 non-coding RNA RNA, long non-coding Approved 12p13.1 12p13.1 FLJ33810 C12orf36 chromosome 12 open reading frame 36 2006-01-23 2014-10-01 2014-10-01 2014-11-19 283422 ENSG00000180861 OTTHUMG00000167562 AK091129 NR_036555 Q495D7 +HGNC:27333 LINC01560 long intergenic non-protein coding RNA 1560 non-coding RNA RNA, long non-coding Approved Xp11.3 Xp11.3 CXorf24 chromosome X open reading frame 24 2004-06-04 2014-10-01 2014-10-01 2016-10-05 203414 ENSG00000196741 OTTHUMG00000021445 BC025179 NR_126059 Q8TB33 12477932 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf24 +HGNC:31365 LINC01561 long intergenic non-protein coding RNA 1561 non-coding RNA RNA, long non-coding Approved 10q26.12 10q26.12 "FLJ37402|Em:AC023282.2" C10orf85 chromosome 10 open reading frame 85 2004-03-16 2014-10-08 2014-10-08 2014-10-08 404216 ENSG00000177234 OTTHUMG00000019167 AK094721 NR_103717 Q8N1V8 +HGNC:51335 LINC01562 long intergenic non-protein coding RNA 1562 non-coding RNA RNA, long non-coding Approved 1p32.3 01p32.3 RP11-296A18.3 2014-10-08 2014-10-08 104054213 ENSG00000203356 OTTHUMG00000008195 AK127900 25280944 +HGNC:51343 LINC01563 long intergenic non-protein coding RNA 1563 non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 2014-10-10 2014-10-10 101060544 ENSG00000236819 OTTHUMG00000130762 AB593144 NR_110895 +HGNC:51361 LINC01564 long intergenic non-protein coding RNA 1564 non-coding RNA RNA, long non-coding Approved 6p12.1 06p12.1 TCONS_00011314 2014-10-15 2014-10-15 101927171 ENSG00000235899 OTTHUMG00000014881 NR_125841 25307116 +HGNC:17099 LINC01565 long intergenic non-protein coding RNA 1565 non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 GR6 C3orf27 chromosome 3 open reading frame 27 2005-12-19 2014-10-16 2014-10-16 2016-10-05 23434 ENSG00000198685 OTTHUMG00000159688 AF008192 NR_125802 O15544 9307271 +HGNC:27555 LINC01566 long intergenic non-protein coding RNA 1566 non-coding RNA RNA, long non-coding Approved 16p11.1 16p11.1 2014-10-16 2015-01-22 283914 ENSG00000259841 OTTHUMG00000176250 "BC038774|BC045579" NR_027079 +HGNC:51367 LINC01567 long intergenic non-protein coding RNA 1567 non-coding RNA RNA, long non-coding Approved 16p12.1 16p12.1 2014-10-16 2014-10-16 400511 ENSG00000224310 OTTHUMG00000131650 AK127191 NR_122072 +HGNC:51371 LINC01568 long intergenic non-protein coding RNA 1568 non-coding RNA RNA, long non-coding Approved 16q22.3 16q22.3 2014-10-16 2014-10-16 100506172 ENSG00000258779 OTTHUMG00000170832 BC036646 NR_038234 +HGNC:51380 LINC01569 long intergenic non-protein coding RNA 1569 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 TCONS_00024567 2014-10-23 2014-10-23 100507501 ENSG00000262468 OTTHUMG00000177618 AK094828 NR_039999 +HGNC:51382 LINC01570 long intergenic non-protein coding RNA 1570 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 2014-10-23 2014-10-23 101926950 ENSG00000260338 OTTHUMG00000177115 "BI825594|DB449025" NR_110902 +HGNC:51384 LINC01571 long intergenic non-protein coding RNA 1571 non-coding RNA RNA, long non-coding Approved 16q12.1 16q12.1 TCONS_00024399 2014-10-23 2014-10-23 101927364 ENSG00000260057 OTTHUMG00000173251 AI050873 NR_110916 +HGNC:51385 LINC01572 long intergenic non-protein coding RNA 1572 non-coding RNA RNA, long non-coding Approved 16q22.2 16q22.2 2014-10-23 2014-10-23 101927957 ENSG00000261008 OTTHUMG00000173457 NR_126330 +HGNC:51388 LINC01574 long intergenic non-protein coding RNA 1574 non-coding RNA RNA, long non-coding Approved 5q35.2 05q35.2 "HI-LNC12|TCONS_00009551" Human Islet Long Non Coding RNA 12 2014-11-19 2014-11-19 102577424 ENSG00000248859 OTTHUMG00000163231 NR_108030 23040067 +HGNC:48626 LINC01578 long intergenic non-protein coding RNA 1578 non-coding RNA RNA, long non-coding Approved 15q26.1 15q26.1 2014-11-21 2014-11-21 100507217 ENSG00000272888 OTTHUMG00000149845 NR_037601 +HGNC:27519 LINC01579 long intergenic non-protein coding RNA 1579 non-coding RNA RNA, long non-coding Approved 15q26.1-q26.2 15q26.1-q26.2 2014-11-21 2014-11-21 283682 ENSG00000258754 OTTHUMG00000171808 BC037497 XR_001751672 +HGNC:51414 LINC01580 long intergenic non-protein coding RNA 1580 non-coding RNA RNA, long non-coding Approved 15q26.2 15q26.2 2014-11-21 2014-11-21 101927129 ENSG00000258785 OTTHUMG00000171810 BC021741 NR_120322 +HGNC:51415 LINC01581 long intergenic non-protein coding RNA 1581 non-coding RNA RNA, long non-coding Approved 15q26.2 15q26.2 2014-11-21 2014-11-21 101927112 ENSG00000259724 OTTHUMG00000172625 BC043440 NR_120320 +HGNC:51416 LINC01582 long intergenic non-protein coding RNA 1582 non-coding RNA RNA, long non-coding Approved 15q26.3 15q26.3 TCONS_00023827 2014-11-21 2014-11-21 101927332 ENSG00000259611 OTTHUMG00000171877 NR_120325 +HGNC:51425 LINC01583 long intergenic non-protein coding RNA 1583 non-coding RNA RNA, long non-coding Approved 15q25.2 15q25.2 2014-11-21 2014-11-21 101929690 ENSG00000259518 OTTHUMG00000172173 BC043257 NR_120367 +HGNC:51426 LINC01584 long intergenic non-protein coding RNA 1584 non-coding RNA RNA, long non-coding Approved 15q25.3 15q25.3 TCONS_00024001 2014-11-21 2014-11-21 101929701 ENSG00000260477 OTTHUMG00000172870 BX116292 NR_120368 +HGNC:51432 LINC01585 long intergenic non-protein coding RNA 1585 non-coding RNA RNA, long non-coding Approved 15q26.1 15q26.1 2014-11-26 2014-11-26 101929765 ENSG00000245479 OTTHUMG00000172362 BC038778 NR_120371 +HGNC:51434 LINC01586 long intergenic non-protein coding RNA 1586 non-coding RNA RNA, long non-coding Approved 15q26.1 15q26.1 TCONS_00023252 2014-11-26 2014-11-26 101929743 ENSG00000249487 OTTHUMG00000171852 AK054749 NR_120369 +HGNC:13716 LINC01587 long intergenic non-protein coding RNA 1587 non-coding RNA RNA, long non-coding Approved 4p16.2 04p16.2 aC1 C4orf6 chromosome 4 open reading frame 6 2000-12-04 2014-12-10 2014-12-10 2016-10-05 10141 ENSG00000082929 OTTHUMG00000125492 D82070 NR_126517 Q99440 9016955 +HGNC:27503 LINC01588 long intergenic non-protein coding RNA 1588 non-coding RNA RNA, long non-coding Approved 14q22.1 14q22.1 C14orf182 chromosome 14 open reading frame 182 2009-02-24 2014-12-10 2014-12-10 2014-12-10 283551 ENSG00000214900 OTTHUMG00000167699 AK090420 NR_126496 A1A4T8 +HGNC:51520 LINC01589 long intergenic non-protein coding RNA 1589 non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 "CTA-941F9.9|TCONS_00029353" 2015-01-23 2015-01-23 100506737 ENSG00000238120 OTTHUMG00000151331 BC045163 NR_131244 25482444 +HGNC:21404 LINC01590 long intergenic non-protein coding RNA 1590 non-coding RNA RNA, long non-coding Approved 6q15-q16.1 06q15-q16.1 dJ102H19.4 C6orf164 chromosome 6 open reading frame 164 2003-06-12 2015-02-05 2015-02-05 2015-02-05 63914 AK021476 NR_026784 Q5TEZ4 RGD:1305158 +HGNC:27819 LINC01591 long intergenic non-protein coding RNA 1591 non-coding RNA RNA, long non-coding Approved 8q24.22 08q24.22 2015-03-05 2015-03-05 286094 ENSG00000254083 OTTHUMG00000164328 NR_026706 12477932 +HGNC:51557 LINC01592 long intergenic non-protein coding RNA 1592 non-coding RNA RNA, long non-coding Approved 8q13.2 08q13.2 2015-03-05 2015-03-05 100505718 ENSG00000253658 OTTHUMG00000164460 NR_039986 +HGNC:51583 LINC01593 long intergenic non-protein coding RNA 1593 non-coding RNA RNA, long non-coding Approved 2q12.3 02q12.3 TCONS_00003364 2015-03-11 2015-07-29 107178918 ENSG00000231221 OTTHUMG00000153366 NR_135071 +HGNC:51584 LINC01594 long intergenic non-protein coding RNA 1594 non-coding RNA RNA, long non-coding Approved 2q12.3 02q12.3 TCONS_l2_00015893 2015-03-11 2015-03-11 102724774 ENSG00000225328 OTTHUMG00000153177 CR748429 NR_131251 +HGNC:51586 LINC01595 long intergenic non-protein coding RNA 1595 non-coding RNA RNA, long non-coding Approved 19q13.33 19q13.33 2015-03-11 2015-03-11 102725176 ENSG00000259108 OTTHUMG00000170611 "BP420239|AV687190" XR_936005 +HGNC:51591 LINC01596 long intergenic non-protein coding RNA 1596 non-coding RNA RNA, long non-coding Approved 4q35.2 04q35.2 TCONS_00007705 2015-03-11 2015-03-11 105377617 ENSG00000250666 OTTHUMG00000160584 "BX094246|AI806912" NR_132380 +HGNC:51594 LINC01597 long intergenic non-protein coding RNA 1597 non-coding RNA RNA, long non-coding Approved 20q11.1 20q11.1 2015-03-12 2015-03-12 400841 ENSG00000205611 OTTHUMG00000133197 AK127732 +HGNC:51597 LINC01598 long intergenic non-protein coding RNA 1598 non-coding RNA RNA, long non-coding Approved 20q11.1 20q11.1 TCONS_00028363 2015-03-12 2015-03-12 105379478 ENSG00000231934 OTTHUMG00000032154 "BX100171|AA470003|AW342060" NR_133643 +HGNC:27285 LINC01599 long intergenic non-protein coding RNA 1599 non-coding RNA RNA, long non-coding Approved 14q21.3 14q21.3 C14orf183 chromosome 14 open reading frame 183 2009-09-30 2015-03-18 2015-03-18 2015-03-18 196913 ENSG00000168260 OTTHUMG00000170858 AF390030 NR_102736 Q8WXQ3 +HGNC:21600 LINC01600 long intergenic non-protein coding RNA 1600 non-coding RNA RNA, long non-coding Approved 6p25.2 06p25.2 "FLJ31934|bA145H9.2" C6orf195 chromosome 6 open reading frame 195 2003-06-25 2015-03-18 2015-03-18 2015-03-18 154386 ENSG00000164385 OTTHUMG00000014122 AK056496 NR_131168 Q96MT4 +HGNC:51651 LINC01601 long intergenic non-protein coding RNA 1601 non-coding RNA RNA, long non-coding Approved 18q12.3 18q12.3 2015-04-23 2015-04-23 105667213 BX119171 NR_131768 +HGNC:51634 LINC01602 long intergenic non-protein coding RNA 1602 non-coding RNA RNA, long non-coding Approved 8q12.1 08q12.1 T1560 2015-04-24 2015-04-24 100505477 ENSG00000205293 OTTHUMG00000164281 BC040611 NR_130934 15223130 +HGNC:51652 LINC01603 long intergenic non-protein coding RNA 1603 non-coding RNA RNA, long non-coding Approved 8q13.2 08q13.2 2015-04-24 2015-04-24 100505739 ENSG00000253479 OTTHUMG00000165095 NR_110433 +HGNC:51654 LINC01605 long intergenic non-protein coding RNA 1605 non-coding RNA RNA, long non-coding Approved 8p11.23 08p11.23 TCONS_00014973 2015-04-24 2015-04-24 100507420 ENSG00000253161 OTTHUMG00000163996 NR_121620 +HGNC:51656 LINC01606 long intergenic non-protein coding RNA 1606 non-coding RNA RNA, long non-coding Approved 8q12.1 08q12.1 TCONS_l2_00027778 2015-04-24 2015-04-24 100507651 ENSG00000253301 OTTHUMG00000164416 NR_038235 +HGNC:51660 LINC01607 long intergenic non-protein coding RNA 1607 non-coding RNA RNA, long non-coding Approved 8q21.13 08q21.13 2015-04-24 2015-04-24 101927067 ENSG00000272138 OTTHUMG00000185488 NR_125410 +HGNC:51662 LINC01608 long intergenic non-protein coding RNA 1608 non-coding RNA RNA, long non-coding Approved 8q23.2 08q23.2 TCONS_00015136 2015-04-24 2015-04-24 101927459 ENSG00000253877 OTTHUMG00000164908 NR_125416 +HGNC:51663 LINC01609 long intergenic non-protein coding RNA 1609 non-coding RNA RNA, long non-coding Approved 8q23.2-q23.3 08q23.2-q23.3 2015-04-24 2016-10-11 101927487 ENSG00000253103 OTTHUMG00000164912 NR_125418 +HGNC:51791 LINC01611 long intergenic non-protein coding RNA 1611 non-coding RNA RNA, long non-coding Approved 6q14.3 06q14.3 "RP1-90L14.1|TCONS_l2_00025430" 2015-05-22 2015-05-22 105377880 ENSG00000231776 OTTHUMG00000015125 NR_132100 25364816 +HGNC:51837 LINC01612 long intergenic non-protein coding RNA 1612 non-coding RNA RNA, long non-coding Approved 4q33 04q33 "RP11-789C1.1|TCONS_00008319" 2015-07-31 2015-07-31 101928223 ENSG00000250266 OTTHUMG00000160893 NR_125889 26045391 +HGNC:51842 LINC01613 long intergenic non-protein coding RNA 1613 non-coding RNA RNA, long non-coding Approved 9q33.2 09q33.2 n341773 2015-08-20 2015-08-20 106146149 ENSG00000261432 OTTHUMG00000175687 NR_132393 26269497 +HGNC:51847 LINC01614 long intergenic non-protein coding RNA 1614 non-coding RNA RNA, long non-coding Approved 2q35 02q35 "LCAL4|TCONS_00003105" lung cancer associated lncRNA 4 2015-08-21 2015-08-21 105373869 ENSG00000230838 OTTHUMG00000154838 NR_132383 25116943 +HGNC:51898 LINC01615 long intergenic non-protein coding RNA 1615 non-coding RNA RNA, long non-coding Approved 6q27 06q27 2015-09-17 2015-09-17 101929484 ENSG00000223485 OTTHUMG00000016054 CB123670 NR_132622 +HGNC:51900 LINC01616 long intergenic non-protein coding RNA 1616 non-coding RNA RNA, long non-coding Approved 11p14.1 11p14.1 n341006 2015-09-17 2015-09-17 106456574 ENSG00000261340 OTTHUMG00000173210 AK095844 NR_132652 26318290 +HGNC:30442 LINC01617 long intergenic non-protein coding RNA 1617 non-coding RNA RNA, long non-coding Approved 8q21.11 08q21.11 XLOC_006844 "C8orf23|NCRNA00249" "chromosome 8 open reading frame 23|non-protein coding RNA 249" 2015-09-18 2010-06-02 2015-09-18 101926947 AA861243 XR_428363 26328256 +HGNC:27195 LINC01618 long intergenic non-protein coding RNA 1618 non-coding RNA RNA, long non-coding Approved 4q12 04q12 LOC152578 2015-09-18 2015-09-18 152578 ENSG00000250302 OTTHUMG00000160696 NR_040106 26328256 +HGNC:27409 LINC01619 long intergenic non-protein coding RNA 1619 non-coding RNA RNA, long non-coding Approved 12q21.33 12q21.33 C12orf79 chromosome 12 open reading frame 79 2013-06-06 2015-09-24 2015-09-24 2015-09-24 256021 ENSG00000257242 OTTHUMG00000170091 NR_132339 G3V211 +HGNC:16195 LINC01620 long intergenic non-protein coding RNA 1620 non-coding RNA RNA, long non-coding Approved 20q13.12 20q13.12 dJ1013A22.3 C20orf62 chromosome 20 open reading frame 62 2001-07-17 2015-09-24 2015-09-24 2015-09-24 140834 ENSG00000168746 OTTHUMG00000130221 NR_132342 Q4KN68 +HGNC:14109 LINC01621 long intergenic non-protein coding RNA 1621 non-coding RNA RNA, long non-coding Approved 6q14.1 06q14.1 C6orf7 chromosome 6 open reading frame 7 2000-12-05 2015-10-07 2015-10-07 2015-10-07 89758 ENSG00000235357 OTTHUMG00000015082 NR_131786 +HGNC:27768 LINC01622 long intergenic non-protein coding RNA 1622 non-coding RNA RNA, long non-coding Approved 6p25.3 06p25.3 TCONS_00011202 2015-10-15 2015-10-15 285768 NR_027115 12477932 +HGNC:52050 LINC01623 long intergenic non-protein coding RNA 1623 non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 2015-10-15 2015-10-15 401242 ENSG00000225595 OTTHUMG00000084882 NR_033379 +HGNC:52051 LINC01624 long intergenic non-protein coding RNA 1624 non-coding RNA RNA, long non-coding Approved 6q27 06q27 TCONS_00011425 2015-10-15 2015-10-15 401289 ENSG00000227508 OTTHUMG00000016077 NR_104177 +HGNC:52052 LINC01625 long intergenic non-protein coding RNA 1625 non-coding RNA RNA, long non-coding Approved 6q24.1 06q24.1 TCONS_00011139 2015-10-15 2015-10-15 645434 ENSG00000238099 OTTHUMG00000015693 NR_033919 +HGNC:52257 LINC01626 long intergenic non-protein coding RNA 1626 non-coding RNA RNA, long non-coding Approved 6q13 06q13 2015-10-30 2015-10-30 102724000 ENSG00000223765 OTTHUMG00000015005 NR_121615 +HGNC:52258 LINC01627 long intergenic non-protein coding RNA 1627 non-coding RNA RNA, long non-coding Approved 9p13.2 09p13.2 RP11-397D12.4 2015-11-04 2015-11-04 107075206 ENSG00000224648 OTTHUMG00000019916 26393913 +HGNC:52259 LINC01628 long intergenic non-protein coding RNA 1628 non-coding RNA RNA, long non-coding Approved 2p14 02p14 AC007403.1 2015-11-04 2015-11-04 102724321 ENSG00000232688 OTTHUMG00000152852 NR_110600 26393913 +HGNC:52260 LINC01629 long intergenic non-protein coding RNA 1629 non-coding RNA RNA, long non-coding Approved 14q24.3 14q24.3 linc-KIAA1737-2 2015-11-04 2015-11-04 105370578 ENSG00000258602 OTTHUMG00000171577 NR_133913 26400545 +HGNC:52295 LINC01630 long intergenic non-protein coding RNA 1630 non-coding RNA RNA, long non-coding Approved 18q21.2 18q21.2 2016-05-25 2016-05-25 100287225 ENSG00000227115 OTTHUMG00000179692 NR_040074 +HGNC:49089 LINCMD1 long intergenic non-protein coding RNA, muscle differentiation 1 non-coding RNA RNA, long non-coding Approved 6p12.2 06p12.2 "MIR133BHG|LINC-MD1" MIR133B host gene (non-protein coding) Long non-coding RNAs 788 2013-08-29 2014-04-22 2014-02-19 2015-02-09 101154644 ENSG00000225613 OTTHUMG00000014842 BG461844 NR_131248 614933 linc-MD1 +HGNC:21205 LINGO1 leucine rich repeat and Ig domain containing 1 protein-coding gene gene with protein product Approved 15q24.3 15q24.3 "FLJ14594|LERN1" LRRN6A leucine rich repeat neuronal 6A I-set domain containing 593 2003-06-11 2007-02-01 2007-02-01 2016-10-05 84894 ENSG00000169783 OTTHUMG00000172629 uc059lzw.1 AK027500 NM_032808 "CCDS45313|CCDS73766" Q96FE5 14686891 MGI:1915522 RGD:1308668 LINGO1 609791 285742 objectId:2882 +HGNC:27368 LINGO1-AS1 LINGO1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q24.3 15q24.3 2014-11-21 2014-11-21 253044 ENSG00000259666 OTTHUMG00000172626 BC042092 NR_045123 12477932 +HGNC:51423 LINGO1-AS2 LINGO1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 15q24.3 15q24.3 2014-11-21 2014-11-21 101929478 ENSG00000259281 OTTHUMG00000172627 BC038758 NR_120361 +HGNC:21207 LINGO2 leucine rich repeat and Ig domain containing 2 protein-coding gene gene with protein product Approved 9p21.2-p21.1 09p21.2-p21.1 LERN3 LRRN6C leucine rich repeat neuronal 6C I-set domain containing 593 2003-06-11 2007-02-01 2007-02-01 2016-10-11 158038 ENSG00000174482 OTTHUMG00000019721 uc064smp.1 AL353746 NM_152570 CCDS6524 Q7L985 14686891 MGI:2442298 RGD:1310773 LINGO2 609793 +HGNC:21206 LINGO3 leucine rich repeat and Ig domain containing 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 LERN2 LRRN6B leucine rich repeat neuronal 6B I-set domain containing 593 2003-06-11 2007-02-01 2007-02-01 2013-01-11 645191 ENSG00000220008 OTTHUMG00000180418 uc060rka.1 AK091795 NM_001101391 CCDS45905 P0C6S8 14686891 MGI:3609246 RGD:1592209 LINGO3 609792 +HGNC:31814 LINGO4 leucine rich repeat and Ig domain containing 4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 LRRN6D leucine rich repeat neuronal 6D I-set domain containing 593 2004-09-03 2007-02-01 2007-02-01 2015-08-25 339398 ENSG00000213171 OTTHUMG00000013059 uc001ezf.2 XM_291387 CCDS30855 Q6UY18 MGI:2444651 RGD:1562025 LINGO4 609794 +HGNC:30922 LINS1 lines homolog 1 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 WINS1 LINS "lines homolog 1 (Drosophila)|lines homolog (Drosophila)" 2005-02-23 2015-08-18 2015-08-18 2015-09-28 55180 ENSG00000140471 OTTHUMG00000149865 AK095448 NM_018148 CCDS10385 Q8NG48 "12119551|8889548" MGI:1919885 RGD:1308792 610350 357802 +HGNC:6617 LIPA lipase A, lysosomal acid type protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "LAL|CESD" "Wolman disease|lysosomal acid lipase|sterol esterase" lipase A, lysosomal acid, cholesterol esterase Lipases 464 1986-01-01 2016-02-12 2016-10-05 3988 ENSG00000107798 OTTHUMG00000018716 uc001kga.6 M74775 NM_000235 "CCDS7401|CCDS73160" P38571 8432549 MGI:96789 RGD:3008 LIPA 613497 123063 S33.017 3.1.1.13 +HGNC:6618 LIPB lipase B, lysosomal acid type other unknown Approved 16 16 2001-06-22 2016-02-12 2016-02-12 3989 6937431 247980 3.1.1.3 +HGNC:6619 LIPC lipase C, hepatic type protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "HL|HTGL" Triacylglycerol lipase lipase, hepatic Lipases 464 2001-06-22 2016-02-12 2016-02-12 3990 ENSG00000166035 OTTHUMG00000132632 uc010bga.3 XM_005254374 CCDS10166 P11150 MGI:96216 RGD:3009 LIPC 151670 159980 3.1.1.3 +HGNC:52294 LIPC-AS1 LIPC antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q21.3 15q21.3 2016-05-25 2016-05-25 101928694 ENSG00000259293 OTTHUMG00000171977 NR_120338 +HGNC:6621 LIPE lipase E, hormone sensitive type protein-coding gene gene with protein product Approved 19q13.2 19q13.2 HSL lipase, hormone-sensitive Lipases 464 1989-02-23 2016-02-12 2016-02-12 3991 ENSG00000079435 OTTHUMG00000182814 uc002otr.4 L11706 NM_005357 CCDS12607 Q05469 8506334 MGI:96790 RGD:3010 LIPE 151750 444104 S09.993 objectId:2593 3.1.1.79 +HGNC:48589 LIPE-AS1 LIPE antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.2 19q13.2 2013-05-21 2013-05-21 100996307 ENSG00000213904 OTTHUMG00000182815 "AK096849|BM974950" NR_073179 +HGNC:6622 LIPF lipase F, gastric type protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "HGL|HLAL" gastric triacylglycerol lipase lipase, gastric Lipases 464 1998-10-14 2016-02-12 2016-10-05 8513 ENSG00000182333 OTTHUMG00000018695 uc001kfg.3 X05997 NM_004190 "CCDS7389|CCDS55718|CCDS55719|CCDS65896" P07098 "3304425|9186906" MGI:1914967 RGD:708441 LIPF 601980 S33.018 objectId:2626 3.1.1.3 +HGNC:6623 LIPG lipase G, endothelial type protein-coding gene gene with protein product Approved 18q21.1 18q21.1 EDL lipase, endothelial Lipases 464 1999-06-18 2016-02-12 2016-02-12 9388 ENSG00000101670 OTTHUMG00000179658 uc002ldv.4 AF118767 NM_006033 "CCDS11938|CCDS77187" Q9Y5X9 "10318835|10192396" MGI:1341803 RGD:1310740 LIPG 603684 objectId:2591 +HGNC:18483 LIPH lipase H protein-coding gene gene with protein product Approved 3q27.2 03q27.2 "mPA-PLA1|PLA1B|mPA-PLA1alpha|LPDLR" phospholipase A(1) lipase, member H Lipases 464 2002-11-28 2016-01-29 2016-10-05 200879 ENSG00000163898 OTTHUMG00000156657 uc003fpm.4 AY093498 XM_006713529 CCDS3272 Q8WWY8 "12213196|12063250" MGI:2388029 RGD:1592849 LIPH 607365 159333 3.1.1.32 +HGNC:18821 LIPI lipase I protein-coding gene gene with protein product Approved 21q11.2 21q11.2 "PRED5|LPDL|CT17|mPA-PLA1beta|PLA1C" "membrane-associated phospholipase A1 beta|cancer/testis antigen 17" lipase, member I Lipases 464 2002-07-01 2016-01-29 2016-01-29 149998 ENSG00000188992 OTTHUMG00000074258 uc061zbf.1 BC028732 NM_198996 CCDS13564 Q6XZB0 12719377 MGI:2443868 RGD:1310162 LIPI 609252 123067 3.1.1.32 +HGNC:21773 LIPJ lipase family member J protein-coding gene gene with protein product Approved 10q23.31 10q23.31 bA425M17.2 LIPL1 lipase-like, ab-hydrolase domain containing 1 Lipases 464 2004-05-27 2007-02-27 2016-01-29 2016-01-29 142910 ENSG00000204022 OTTHUMG00000018691 uc001kff.3 BC031219 XM_084377 CCDS31240 Q5W064 LIPJ 613921 S33.020 +HGNC:23444 LIPK lipase family member K protein-coding gene gene with protein product Approved 10q23.31 10q23.31 bA186O14.2 LIPL2 lipase-like, ab-hydrolase domain containing 2 Lipases 464 2004-06-02 2007-02-27 2016-01-29 2016-01-29 643414 ENSG00000204021 OTTHUMG00000018693 uc010qmv.3 XM_061222 CCDS44455 Q5VXJ0 MGI:2679259 RGD:1309724 LIPK 613922 +HGNC:23455 LIPM lipase family member M protein-coding gene gene with protein product Approved 10q23.31 10q23.31 bA304I5.1 LIPL3 lipase-like, ab-hydrolase domain containing 3 Lipases 464 2004-05-27 2007-02-27 2016-01-29 2016-01-29 340654 ENSG00000173239 OTTHUMG00000018698 uc009xtm.2 XM_291663 CCDS44457 Q5VYY2 MGI:1926003 RGD:1304912 LIPM 613923 +HGNC:23452 LIPN lipase family member N protein-coding gene gene with protein product Approved 10q23.31 10q23.31 bA186O14.3 LIPL4 lipase-like, ab-hydrolase domain containing 4 Lipases 464 2004-06-02 2007-02-27 2016-01-29 2016-01-29 643418 ENSG00000204020 OTTHUMG00000018694 uc010qmw.2 XM_926751 CCDS44456 Q5VXI9 MGI:1917416 RGD:1560354 LIPN 613924 264501 +HGNC:29569 LIPT1 lipoyltransferase 1 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "MGC12290|MGC13378" 2004-02-11 2015-08-25 51601 ENSG00000144182 OTTHUMG00000130640 uc002szo.5 AB017566 NM_015929 CCDS2039 Q9Y234 10103005 MGI:3645211 RGD:1310276 LIPT1 610284 394081 2.3.1.181 +HGNC:39278 LIPT1P1 lipoyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 13q33.1 13q33.1 2010-11-25 2010-11-25 100131188 ENSG00000229975 OTTHUMG00000017299 NG_021973 PGOHUM00000248677 +HGNC:37216 LIPT2 lipoyl(octanoyl) transferase 2 (putative) protein-coding gene gene with protein product Approved 11q13.4 11q13.4 2009-09-09 2016-10-12 387787 ENSG00000175536 OTTHUMG00000165646 uc010rrk.3 NM_001144869 CCDS44679 A6NK58 MGI:1914414 RGD:1305211 LRG_1089|http://www.lrg-sequence.org/LRG/LRG_1089 LIPT2 456990 +HGNC:16841 LITAF lipopolysaccharide induced TNF factor protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "PIG7|SIMPLE|FLJ38636|TP53I7" lipopolysaccharide-induced TNF factor 2003-03-14 2016-03-21 2016-10-12 9516 ENSG00000189067 OTTHUMG00000177415 uc059qvo.1 AB034747 NM_004862 "CCDS32386|CCDS45411" Q99732 "9305847|10200294" MGI:1929512 RGD:69294 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_253|http://www.lrg-sequence.org/LRG/LRG_253" LITAF 603795 123070 +HGNC:18581 LIX1 limb and CNS expressed 1 protein-coding gene gene with protein product Approved 5q15 05q15 Lft Lowfat homolog (Drosophila) C5orf11 "chromosome 5 open reading frame 11|Lix1 homolog (mouse)|Lix1 homolog (chicken)" 2002-04-26 2005-02-07 2015-06-18 2015-06-18 167410 ENSG00000145721 OTTHUMG00000128720 uc003kmy.5 NM_153234 CCDS4088 Q8N485 "11731258|19710173" MGI:1913893 RGD:1309454 LIX1 610466 +HGNC:28715 LIX1L limb and CNS expressed 1 like protein-coding gene gene with protein product Approved 1q21.1 01q21.1 MGC46719 "Lix1 homolog (mouse) like|Lix1 homolog (chicken)-like|Lix1 homolog (chicken) like" 2005-02-02 2015-06-18 2015-09-03 128077 ENSG00000271601 OTTHUMG00000013741 uc001enr.5 AK128733 NM_153713 CCDS72873 Q8IVB5 19710173 MGI:3036267 RGD:1593161 LIX1L +HGNC:33718 LKAAEAR1 LKAAEAR motif containing 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 C20orf201 chromosome 20 open reading frame 201 2008-06-11 2014-01-28 2014-01-28 2014-11-18 198437 ENSG00000171695 OTTHUMG00000033021 NM_001007125 CCDS33509 Q8TD35 MGI:2685538 RGD:1306208 +HGNC:6628 LLGL1 LLGL1, scribble cell polarity complex component protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "Lgl1|Mgl1" "DLG4|LLGL|HUGL|HUGL-1" "lethal giant larvae homolog 1 (Drosophila)|lethal giant larvae homolog 1, scribble cell polarity complex component" "WD repeat domain containing|Scribble complex" "362|1224" 1995-09-12 2016-03-31 2016-03-31 3996 ENSG00000131899 OTTHUMG00000059396 uc002gsp.4 XM_011523849 CCDS32586 Q15334 "7542763|8565641" MGI:102682 RGD:3012 LLGL1 600966 +HGNC:6629 LLGL2 LLGL2, scribble cell polarity complex component protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "HGL|Hugl-2" "lethal giant larvae homolog 2 (Drosophila)|lethal giant larvae homolog 2, scribble cell polarity complex component" "WD repeat domain containing|Scribble complex" "362|1224" 1997-01-28 2016-03-31 2016-03-31 3993 ENSG00000073350 OTTHUMG00000179685 uc002joh.4 X87342 NM_004524 "CCDS11725|CCDS32733|CCDS45776" Q6P1M3 22580609 MGI:1918843 RGD:1560307 LLGL2 +HGNC:28229 LLPH LLP homolog, long-term synaptic facilitation protein-coding gene gene with protein product Approved 12q14.3 12q14.3 "MGC14817|hLLP" human LAPS18-like protein C12orf31 "chromosome 12 open reading frame 31|LLP homolog, long-term synaptic facilitation (Aplysia)" 2006-01-17 2008-10-02 2016-04-14 2016-04-14 84298 ENSG00000139233 OTTHUMG00000168959 uc010ssw.3 AK057947 NM_032338 CCDS8974 Q9BRT6 "12477932|26961175" MGI:1913475 RGD:1308261 LLPH 616998 +HGNC:50493 LLPH-AS1 LLPH antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 12q14.3 12q14.3 2014-07-28 2014-07-28 103625681 ENSG00000239335 OTTHUMG00000168960 DA010836 NR_125724 +HGNC:50491 LLPHP1 LLP homolog, long-term synaptic facilitation pseudogene 1 pseudogene pseudogene Approved 20p11.23 20p11.23 LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 1 2014-05-09 2016-06-27 2016-06-27 106480685 ENSG00000270793 OTTHUMG00000184891 NG_043290 PGOHUM00000247607 +HGNC:50492 LLPHP2 LLP homolog, long-term synaptic facilitation pseudogene 2 pseudogene pseudogene Approved 21q21.3 21q21.3 LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 2 2014-05-09 2016-06-27 2016-06-27 106480300 ENSG00000235514 OTTHUMG00000078439 NG_044256 PGOHUM00000239054 +HGNC:6630 LLP entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-07-28 +HGNC:6631 LMAN1 lectin, mannose binding 1 protein-coding gene gene with protein product Approved 18q21.32 18q21.32 "MR60|ERGIC-53|ERGIC53|gp58|MCFD1|FMFD1" endoplasmic reticulum-golgi intermediate compartment protein 53 F5F8D "coagulation factor V-factor VIII combined deficiency|lectin, mannose-binding, 1" 1996-06-06 2016-01-22 2016-10-12 3998 ENSG00000074695 OTTHUMG00000132758 uc002lhz.4 X71661 NM_005570 CCDS11974 P49257 "9546392|8854877" MGI:1917611 RGD:71020 LRG_595|http://www.lrg-sequence.org/LRG/LRG_595 LMAN1 601567 123076 +HGNC:6632 LMAN1L lectin, mannose binding 1 like protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "ERGL|ERGIC-53L" lectin, mannose-binding, 1 like 2000-05-05 2016-01-22 2016-01-22 79748 ENSG00000140506 OTTHUMG00000142813 uc002ayt.2 AF303398 NM_021819 CCDS10270 Q9HAT1 11255007 MGI:2667537 RGD:1310538 LMAN1L 609548 +HGNC:16986 LMAN2 lectin, mannose binding 2 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "GP36B|VIP36" C5orf8 "chromosome 5 open reading frame 8|lectin, mannose-binding 2" 2001-10-18 2003-07-04 2016-01-22 2016-10-05 10960 ENSG00000169223 OTTHUMG00000130860 uc003mge.4 U10362 NM_006816 CCDS4417 Q12907 12609988 MGI:1914140 RGD:1308965 LMAN2 609551 +HGNC:19263 LMAN2L lectin, mannose binding 2 like protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "DKFZp564L2423|VIPL" lectin, mannose-binding 2-like 2003-07-01 2016-01-22 2016-10-05 81562 ENSG00000114988 OTTHUMG00000130453 uc002swu.4 AL136617 NM_030805 "CCDS2023|CCDS46365" Q9H0V9 12609988 MGI:2443010 RGD:1311393 LMAN2L 609552 456803 +HGNC:13243 LMBR1 limb development membrane protein 1 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "ACHP|FLJ11665|ZRS" C7orf2 "chromosome 7 open reading frame 2|limb region 1 homolog (mouse)" 2000-12-20 2005-07-25 2013-08-05 2014-11-18 64327 ENSG00000105983 OTTHUMG00000151510 uc003wmw.5 AF107454 NM_022458 CCDS5945 Q8WVP7 "10329000|11090342" MGI:1861746 RGD:1563910 LMBR1 605522 123085 +HGNC:18268 LMBR1L limb development membrane protein 1 like protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "FLJ10494|KIAA1174" "limb region 1 homolog (mouse)-like|limb development membrane protein 1-like" 2005-07-25 2016-03-10 2016-03-10 55716 ENSG00000139636 OTTHUMG00000150511 uc001rth.5 AB033000 NM_018113 "CCDS8780|CCDS73466" Q6UX01 "10574461|11287427" MGI:1289247 RGD:1309631 LMBR1L 610007 +HGNC:23038 LMBRD1 LMBR1 domain containing 1 protein-coding gene gene with protein product Approved 6q13 06q13 "FLJ11240|bA810I22.1|cblF" C6orf209 chromosome 6 open reading frame 209 2003-11-26 2005-07-25 2005-07-25 2016-08-24 55788 ENSG00000168216 OTTHUMG00000014985 uc003pfa.4 AF113224 NM_018368 CCDS4969 Q9NUN5 "19136951|27456980" MGI:1915671 RGD:708471 LMBRD1 database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=LMBRD1 LMBRD1 612625 173562 +HGNC:25287 LMBRD2 LMBR1 domain containing 2 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 DKFZp434H2226 2005-07-25 2014-11-19 92255 ENSG00000164187 OTTHUMG00000162150 uc003jka.2 NM_001007527 CCDS34145 Q68DH5 MGI:2444173 RGD:1563920 LMBRD2 +HGNC:6633 LMCD1 LIM and cysteine rich domains 1 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 dyxin LIM domain containing 1218 2000-02-29 2016-01-28 2016-01-28 29995 ENSG00000071282 OTTHUMG00000154971 uc010hci.4 AF169284 NM_014583 "CCDS33688|CCDS63533|CCDS63534|CCDS63532" Q9NZU5 10662546 MGI:1353635 RGD:1308963 LMCD1 604859 +HGNC:44477 LMCD1-AS1 LMCD1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3p26.1 03p26.1 2012-11-05 2012-11-05 100288428 ENSG00000227110 OTTHUMG00000154968 uc062ggg.1 NR_033378 +HGNC:14154 LMF1 lipase maturation factor 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ12681|JFP11|FLJ22302|TMEM112A" "C16orf26|TMEM112" "chromosome 16 open reading frame 26|transmembrane protein 112" 2000-12-21 2007-11-29 2007-11-29 2014-11-19 64788 ENSG00000103227 OTTHUMG00000047848 uc059otd.1 AK022743 NM_022773 CCDS45373 Q96S06 "11157797|17994020" MGI:1923733 RGD:1310180 LMF1 611761 269953 +HGNC:50469 LMF1-AS1 LMF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 2014-04-30 2014-04-30 101929387 ENSG00000260439 OTTHUMG00000172821 NR_110945 +HGNC:25096 LMF2 lipase maturation factor 2 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "TMEM153|TMEM112B" "transmembrane protein 153|transmembrane protein 112B" 2006-05-19 2007-11-29 2007-11-29 2016-04-25 91289 ENSG00000100258 OTTHUMG00000150206 uc003blp.3 BC002942 NM_033200 CCDS14093 Q9BU23 12477932 MGI:2146015 RGD:1306274 LMF2 +HGNC:15991 LMLN leishmanolysin like peptidase protein-coding gene gene with protein product Approved 3q29 03q29 "Gp63|Msp" leishmanolysin-like (metallopeptidase M8 family) 2001-06-28 2016-02-12 2016-02-12 89782 ENSG00000185621 OTTHUMG00000155375 uc011buo.2 AJ312398 NM_033029 "CCDS3332|CCDS46988" Q96KR4 MGI:2444736 RGD:1311465 LMLN 609380 M08.003 3.4.24.36 +HGNC:40738 LMLN-AS1 LMLN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 LMLN antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873947 ENSG00000232832 OTTHUMG00000155374 uc062shf.1 NR_046669 +HGNC:6636 LMNA lamin A/C protein-coding gene gene with protein product Approved 1q22 01q22 HGPS "LMN1|CMD1A|LGMD1B|PRO1|LMNL1" "cardiomyopathy, dilated 1A (autosomal dominant)|limb girdle muscular dystrophy 1B (autosomal dominant)|progeria 1 (Hutchinson-Gilford type)|lamin A/C-like 1" Lamins 612 1992-04-09 2016-10-12 4000 ENSG00000160789 OTTHUMG00000013961 uc001fni.4 BC014507 NM_170707 "CCDS1129|CCDS1131|CCDS58038|CCDS72941|CCDS72942" P02545 "8511676|8838815|12702809" MGI:96794 RGD:620456 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/LMNA|UMD Locus Specific Databases|http://www.umd.be/|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=LMNA|LRG_254|http://www.lrg-sequence.org/LRG/LRG_254" LMNA 150330 123090 HGNC:6636 +HGNC:6637 LMNB1 lamin B1 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 Lamins 612 1995-03-28 2014-11-19 4001 ENSG00000113368 OTTHUMG00000128969 uc003kud.3 L37737 NM_005573 CCDS4140 P20700 "7557986|8838815" MGI:96795 RGD:620522 LMNB1 150340 123095 HGNC:6637 +HGNC:6638 LMNB2 lamin B2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 LMN2 Lamins 612 1992-04-09 2016-04-25 84823 ENSG00000176619 OTTHUMG00000150626 uc002lvy.5 M94362 NM_032737 CCDS12090 Q03252 1630457 MGI:96796 RGD:1563803 LMNB2 150341 221339 HGNC:6638 +HGNC:6640 LMNL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:26683 LMNTD1 lamin tail domain containing 1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "FLJ36004|Pas1c1" IFLTD1 intermediate filament tail domain containing 1 2006-12-04 2014-05-29 2014-05-29 2014-11-19 160492 ENSG00000152936 AK093323 NM_152590 "CCDS8704|CCDS44847|CCDS44848|CCDS44849|CCDS58218" Q8N9Z9 12477932 MGI:1921321 RGD:6486776 +HGNC:28561 LMNTD2 lamin tail domain containing 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 MGC35138 C11orf35 chromosome 11 open reading frame 35 2005-05-13 2014-05-29 2014-05-29 2015-08-25 256329 ENSG00000185522 OTTHUMG00000132005 NM_173573 CCDS7701 Q8IXW0 12477932 MGI:1919250 RGD:1307439 +HGNC:6641 LMO1 LIM domain only 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "TTG1|RHOM1" RBTN1 rhombotin 1 LIM domain containing 1218 1990-09-10 2015-11-23 2016-10-12 4004 ENSG00000166407 OTTHUMG00000165833 uc001mgg.3 M26682 NM_002315 "CCDS44534|CCDS58118" P25800 "2034676|1703797" MGI:102812 RGD:621166 LRG_508|http://www.lrg-sequence.org/LRG/LRG_508 LMO1 186921 457735 +HGNC:6642 LMO2 LIM domain only 2 protein-coding gene gene with protein product Approved 11p13 11p13 "TTG2|RHOM2|RBTN2" "T-cell translocation gene 2|rhombotin-like 1" RBTNL1 rhombotin-like 1 LIM domain containing 1218 1991-08-21 2015-11-23 2015-11-23 4005 ENSG00000135363 OTTHUMG00000157176 uc001mve.5 X61118 NM_005574 "CCDS7888|CCDS44567" P25791 2034676 MGI:102811 RGD:1307101 LMO2 180385 +HGNC:6643 LMO3 LIM domain only 3 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "Rhom-3|DAT1" RBTNL2 rhombotin-like 2 LIM domain containing 1218 1991-07-11 2015-11-23 2016-10-05 55885 ENSG00000048540 OTTHUMG00000168837 uc058lqc.1 BC026311 NM_018640 "CCDS8678|CCDS58210|CCDS58211|CCDS58212" Q8TAP4 11489251 MGI:102810 RGD:1561357 LMO3 180386 +HGNC:6644 LMO4 LIM domain only 4 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 LIM domain containing 1218 1998-10-30 2014-11-19 8543 ENSG00000143013 OTTHUMG00000010248 uc001dmi.4 U24576 NM_006769 CCDS713 P61968 MGI:109360 RGD:1305670 LMO4 603129 +HGNC:6646 LMO7 LIM domain 7 protein-coding gene gene with protein product Approved 13q22.2 13q22.2 "FBX20|KIAA0858" F-box only protein 20 FBXO20 LIM domain only 7 "LIM domain containing|PDZ domain containing" "1218|1220" 1997-05-15 2004-06-15 2014-11-19 4008 ENSG00000136153 OTTHUMG00000017093 uc010thv.4 AF092557 NM_005358 "CCDS9454|CCDS53876|CCDS81773|CCDS81774" Q8WWI1 "9826547|10531035" MGI:1353586 RGD:1302984 LMO7 604362 +HGNC:50277 LMO7-AS1 LMO7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q22.2 13q22.2 UCHL3-AS1 UCHL3 antisense RNA 1 2014-03-25 2014-03-25 101927155 ENSG00000261105 OTTHUMG00000172803 AW188034 NR_120410 +HGNC:39885 LMO7-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-04-03 +HGNC:44370 LMO7DN LMO7 downstream neighbor protein-coding gene gene with protein product Approved 13q22.2 13q22.2 C13orf45 chromosome 13 open reading frame 45 2012-09-13 2014-03-25 2014-03-25 2016-07-06 729420 ENSG00000178734 AK092698 NM_001257995 CCDS58298 F2Z398 +HGNC:49790 LMO7DN-IT1 LMO7DN intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q22.2 13q22.2 TCONS_00021569 C13orf45-IT1 C13orf45 intronic transcript 1 2014-02-14 2014-03-25 2014-03-25 2014-03-25 104326189 ENSG00000223458 OTTHUMG00000017094 AI825938 NR_126373 +HGNC:6647 LMOD1 leiomodin 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "64kD|D1|1D" leiomodin 1 (smooth muscle) 2000-03-22 2015-12-18 2015-12-18 25802 ENSG00000163431 OTTHUMG00000035802 uc057oju.1 X54162 NM_012134 CCDS53457 P29536 MGI:2135671 RGD:1307236 LMOD1 602715 +HGNC:6648 LMOD2 leiomodin 2 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 leiomodin 2 (cardiac) 2000-03-22 2015-12-18 2015-12-18 442721 ENSG00000170807 OTTHUMG00000157149 uc003vky.3 AC006333 NM_207163 CCDS47693 Q6P5Q4 MGI:2135672 RGD:1592092 LMOD2 608006 +HGNC:6649 LMOD3 leiomodin 3 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 leiomodin 3 (fetal) 2000-07-31 2015-12-18 2015-12-18 56203 ENSG00000163380 OTTHUMG00000158774 uc003dns.3 AK096900 XM_067529 CCDS46862 Q0VAK6 MGI:2444169 RGD:1564924 LMOD3 616112 414069 +HGNC:17880 LMTK2 lemur tyrosine kinase 2 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "KIAA1079|KPI2|KPI-2|cprk|LMR2|BREK|AATYK2|PPP1R100" protein phosphatase 1, regulatory subunit 100 "Receptor Tyrosine Kinases|Protein phosphatase 1 regulatory subunits" "321|694" 2004-01-29 2016-10-05 22853 ENSG00000164715 OTTHUMG00000154256 uc003upd.3 AB029002 NM_014916 CCDS5654 Q8IWU2 15005709 MGI:3036247 RGD:1598332 LMTK2 610989 objectId:2056 +HGNC:19295 LMTK3 lemur tyrosine kinase 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "KIAA1883|LMR3|TYKLM3|PPP1R101" protein phosphatase 1, regulatory subunit 101 "Receptor Tyrosine Kinases|Protein phosphatase 1 regulatory subunits" "321|694" 2004-01-29 2015-09-03 114783 ENSG00000142235 OTTHUMG00000183312 uc002pjk.3 AB067470 NM_052895 CCDS46136 Q96Q04 MGI:3039582 RGD:1588641 LMTK3 objectId:2057 +HGNC:6653 LMX1A LIM homeobox transcription factor 1 alpha protein-coding gene gene with protein product Approved 1q23.3 01q23.3 LMX1.1 LMX1 LIM homeobox transcription factor 1, alpha LIM class homeoboxes 522 1994-09-07 2016-02-23 2016-10-05 4009 ENSG00000162761 OTTHUMG00000034575 uc021pdz.1 AY078391 NM_177398 CCDS1247 Q8TE12 7698771 MGI:1888519 RGD:1304784 LMX1A 600298 8460 +HGNC:6654 LMX1B LIM homeobox transcription factor 1 beta protein-coding gene gene with protein product Approved 9q33.3 09q33.3 NPS1 LIM homeobox transcription factor 1, beta LIM class homeoboxes 522 1998-02-11 2016-02-23 2016-10-12 4010 ENSG00000136944 OTTHUMG00000020692 uc004bqj.3 U77457 NM_002316 "CCDS55342|CCDS55343|CCDS6866" O60663 "9441763|9590287" MGI:1100513 RGD:620843 LRG_1014|http://www.lrg-sequence.org/LRG/LRG_1014 LMX1B 602575 8461 123102 +HGNC:28014 LNP1 leukemia NUP98 fusion partner 1 protein-coding gene gene with protein product Approved 3q12.2 03q12.2 NP3 2005-12-20 2016-06-16 348801 ENSG00000206535 OTTHUMG00000159082 uc003dtx.5 NM_001085451 CCDS43120 A1A4G5 16467868 MGI:5011982 RGD:2323126 LNP1 +HGNC:6656 LNPEP leucyl and cystinyl aminopeptidase protein-coding gene gene with protein product Approved 5q15 05q15 "CAP|PLAP|P-LAP|IRAP" "cystinyl aminopeptidase|placental leucine aminopeptidase" leucyl/cystinyl aminopeptidase Aminopeptidases 104 1997-07-11 2016-07-11 2016-07-11 4012 ENSG00000113441 OTTHUMG00000128719 uc003kmv.2 D50810 NM_005575 "CCDS4087|CCDS43346" Q9UIQ6 8550619 MGI:2387123 RGD:6487002 LNPEP 151300 M01.011 objectId:1570 3.4.11.3 +HGNC:21610 LNPK lunapark, ER junction formation factor protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "Ul|LNP1|LNP" limb and neural patterns KIAA1715 KIAA1715 2003-11-26 2016-07-07 2016-07-07 2016-10-05 80856 ENSG00000144320 OTTHUMG00000154112 uc002ukc.2 AB051502 XM_042834 "CCDS33332|CCDS77488|CCDS77489" Q9C0E8 "11214970|12732147|22729086|25548161" MGI:1918115 RGD:1312042 610236 +HGNC:6657 LNX1 ligand of numb-protein X 1 protein-coding gene gene with protein product Approved 4q12 04q12 "MPDZ|PDZRN2" LNX "ligand of numb-protein X|ligand of numb-protein X 1, E3 ubiquitin protein ligase" "Ring finger proteins|PDZ domain containing" "58|1220" 2000-05-31 2005-11-04 2016-04-05 2016-04-05 84708 ENSG00000072201 OTTHUMG00000102099 uc003hag.6 AF237782 XM_017008776 "CCDS3492|CCDS47057" Q8TBB1 "11521506|11782429" MGI:1278335 RGD:1308159 LNX1 609732 +HGNC:40345 LNX1-AS1 LNX1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q12 04q12 LNX1 antisense RNA 1 (non-protein coding) 2011-05-31 2012-08-15 2014-11-19 100873939 ENSG00000250930 OTTHUMG00000160644 uc062wpx.1 NR_046622 +HGNC:41450 LNX1-AS2 LNX1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 4q12 04q12 LNX1 antisense RNA 2 (non-protein coding) 2011-05-31 2012-08-15 2014-11-19 100873955 ENSG00000248494 OTTHUMG00000160646 uc031seg.2 NR_046827 +HGNC:20421 LNX2 ligand of numb-protein X 2 protein-coding gene gene with protein product Approved 13q12.2 13q12.2 MGC46315 PDZRN1 PDZ domain containing ring finger 1 "Ring finger proteins|PDZ domain containing" "58|1220" 2003-02-06 2004-01-23 2004-01-22 2015-08-25 222484 ENSG00000139517 OTTHUMG00000016634 uc001url.5 AL138699 XM_017020434 CCDS9323 Q8N448 MGI:2155959 RGD:1308222 LNX2 609733 +HGNC:6661 LOH1CR1 loss of heterozygosity, 1, chromosomal region 1 other region Approved 1p36.13 01p36.13 1998-09-03 2009-08-25 8377 14506752 +HGNC:26524 LOH12CR2 loss of heterozygosity, 12, chromosomal region 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 12p13.2 12p13.2 LOH2CR12 loss of heterozygosity, 12, chromosomal region 2 2005-03-01 2012-04-19 2012-10-16 503693 ENSG00000205791 uc001rak.4 AY037867 NR_024061 "11896457|15284860" LOH12CR2 +HGNC:6660 LOH19CR1 loss of heterozygosity, 19, chromosomal region 1 other region Approved 19q13 19q13 DBA 1998-09-03 2008-05-14 8378 9241274 +HGNC:9479 LONP1 lon peptidase 1, mitochondrial protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "LonHS|hLON|PIM1" PRSS15 protease, serine, 15 "AAA ATPases|Proteases, serine" "413|738" 1999-09-17 2006-10-20 2006-10-20 2014-11-18 9361 ENSG00000196365 OTTHUMG00000180504 uc002mcx.5 U02389 NM_004793 "CCDS12148|CCDS62507|CCDS62508" P36776 "8248235|8119403" MGI:1921392 RGD:621598 LONP1 605490 420818 S16.002 +HGNC:20598 LONP2 lon peptidase 2, peroxisomal protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "MGC4840|LONP|LONPL" AAA ATPases 413 2006-10-20 2014-11-19 83752 ENSG00000102910 OTTHUMG00000133144 uc002efi.2 AJ548761 NM_031490 "CCDS10734|CCDS73880" Q86WA8 14561759 MGI:1914137 RGD:1305466 LONP2 S16.006 +HGNC:26302 LONRF1 LON peptidase N-terminal domain and ring finger 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "FLJ23749|RNF191" Ring finger proteins 58 2005-08-19 2015-08-25 91694 ENSG00000154359 OTTHUMG00000165475 uc003wwd.2 AK074329 NM_152271 CCDS5987 Q17RB8 18253036 MGI:3609241 RGD:1562583 LONRF1 +HGNC:24788 LONRF2 LON peptidase N-terminal domain and ring finger 2 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "FLJ45273|RNF192" Ring finger proteins 58 2005-08-19 2014-11-18 164832 ENSG00000170500 OTTHUMG00000130668 uc002tal.4 AK127206 NM_198461 CCDS2046 Q1L5Z9 MGI:1920209 RGD:1562137 LONRF2 +HGNC:39828 LONRF2P1 LON peptidase N-terminal domain and ring finger 2 pseudogene 1 pseudogene pseudogene Approved 18p11.21 18p11.21 2011-03-30 2014-11-19 100421827 ENSG00000266605 OTTHUMG00000178699 NG_026274 PGOHUM00000234878 +HGNC:39829 LONRF2P2 LON peptidase N-terminal domain and ring finger 2 pseudogene 2 pseudogene pseudogene Approved 13q11 13q11 2011-03-30 2014-11-19 100421799 ENSG00000233905 OTTHUMG00000016457 NG_024885 PGOHUM00000248498 +HGNC:21152 LONRF3 LON peptidase N-terminal domain and ring finger 3 protein-coding gene gene with protein product Approved Xq24 Xq24 FLJ22612 RNF127 ring finger protein 127 Ring finger proteins 58 2003-05-21 2005-08-19 2005-08-19 2014-11-19 79836 ENSG00000175556 OTTHUMG00000022262 uc004eqw.5 AK026265 NM_024778 "CCDS14575|CCDS35374|CCDS76014" Q496Y0 MGI:1921615 RGD:1565451 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=LONRF3 LONRF3 +HGNC:6663 LOR loricrin protein-coding gene gene with protein product Approved 1q21.3 01q21.3 1992-05-05 2016-10-05 4014 ENSG00000203782 OTTHUMG00000013938 uc001fbm.4 M61120 NM_000427 CCDS30870 P23490 "2007607|1355480" MGI:96816 RGD:1559993 LOR 152445 123105 +HGNC:6664 LOX lysyl oxidase protein-coding gene gene with protein product Approved 5q23.1 05q23.1 1986-01-01 2016-10-05 4015 ENSG00000113083 OTTHUMG00000128914 uc003ksu.4 NM_002317 CCDS4129 P28300 1685472 MGI:96817 RGD:3015 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ LOX 153455 1.4.3.13 +HGNC:26521 LOXHD1 lipoxygenase homology domains 1 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "FLJ32670|LH2D1" DFNB77 deafness, autosomal recessive 77 2004-04-30 2015-08-25 125336 ENSG00000167210 OTTHUMG00000132644 uc010xcw.2 AK057232 NM_144612 "CCDS45861|CCDS45862|CCDS54184|CCDS77182" Q8IVV2 19732867 MGI:1914609 RGD:1304815 LOXHD1 613072 221356 +HGNC:6665 LOXL1 lysyl oxidase like 1 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "LOXL|LOL" lysyl oxidase-like 1 1993-12-08 2015-11-27 2016-10-05 4016 ENSG00000129038 OTTHUMG00000137595 uc002awc.2 L21186 NM_005576 CCDS10253 Q08397 7689553 MGI:106096 RGD:1308752 LOXL1 153456 +HGNC:44169 LOXL1-AS1 LOXL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q24.1 15q24.1 LOXL1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100287616 ENSG00000261801 OTTHUMG00000172711 uc059lff.1 AK056885 NR_040066 616800 +HGNC:6666 LOXL2 lysyl oxidase like 2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 WS9-14 lysyl oxidase-like 2 1997-11-10 2015-11-27 2015-11-27 4017 ENSG00000134013 OTTHUMG00000163797 uc003xdh.2 U89942 NM_002318 CCDS34864 Q9Y4K0 9722957 MGI:2137913 RGD:1308435 LOXL2 606663 objectId:2853 +HGNC:13869 LOXL3 lysyl oxidase like 3 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 lysyl oxidase-like 3 2001-06-27 2015-11-27 2016-10-05 84695 ENSG00000115318 OTTHUMG00000129953 uc002smp.3 AF282619 NM_032603 "CCDS1953|CCDS74527" P58215 11386757 MGI:1337004 RGD:1311011 LOXL3 607163 +HGNC:17171 LOXL4 lysyl oxidase like 4 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "FLJ21889|LOXC" lysyl oxidase-like 4 2001-11-14 2015-11-27 2016-10-05 84171 ENSG00000138131 OTTHUMG00000018874 uc001kpa.2 AF338441 NM_032211 CCDS7473 Q96JB6 11292829 MGI:1914823 RGD:1308588 LOXL4 607318 +HGNC:6667 LPA lipoprotein(a) protein-coding gene gene with protein product Approved 6q25.3-q26 06q25.3-q26 Lp(a) apolipoprotein(a) LP lipoprotein, Lp(a) 2001-06-22 2016-04-06 2016-10-11 4018 ENSG00000198670 OTTHUMG00000015956 uc063sqy.1 X06290 NM_005577 CCDS43523 P08519 3670400 LPA 152200 S01.999 +HGNC:6668 LPAL1 lipoprotein(a) like 1 other unknown Approved 6q26-q27 06q26-q27 lipoprotein, Lp(a)-like 1 1994-12-12 2016-06-27 2016-06-27 4019 7679504 +HGNC:21210 LPAL2 lipoprotein(a) like 2, pseudogene pseudogene pseudogene Approved 6q25.3 06q25.3 APOARGC APOAL "apolipoprotein A-like|lipoprotein, Lp(a)-like 2|lipoprotein, Lp(a)-like 2, pseudogene" 2003-11-25 2004-02-18 2016-06-27 2016-10-05 80350 ENSG00000213071 OTTHUMG00000015952 U19517 NM_024492 Q16609 "7749817|7679504" LPAL2 611682 +HGNC:3166 LPAR1 lysophosphatidic acid receptor 1 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "edg-2|rec.1.3|vzg-1|Gpcr26|Mrec1.3|LPA1|GPR26" EDG2 endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2 Lysophosphatidic acid receptors 205 1998-05-15 2008-04-11 2008-04-11 2016-10-05 1902 ENSG00000198121 OTTHUMG00000020486 uc004bfb.4 U80811 NM_057159 CCDS6777 Q92633 "8922387|9070858" MGI:108429 RGD:620563 LPAR1 602282 objectId:272 +HGNC:3168 LPAR2 lysophosphatidic acid receptor 2 protein-coding gene gene with protein product Approved 19p12 19p12 "EDG-4|LPA2" EDG4 endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 4 Lysophosphatidic acid receptors 205 1999-02-15 2008-04-11 2008-04-11 2014-11-19 9170 ENSG00000064547 OTTHUMG00000182328 uc002nnc.6 AF011466 NM_004720 CCDS12407 Q9HBW0 "9525886|9804623" MGI:1858422 RGD:1561336 LPAR2 605110 objectId:273 +HGNC:14298 LPAR3 lysophosphatidic acid receptor 3 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "LP-A3|Edg-7|RP4-678I3|HOFNH30|LPA3" EDG7 endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 7 Lysophosphatidic acid receptors 205 2001-01-02 2008-04-11 2008-04-11 2014-11-19 23566 ENSG00000171517 OTTHUMG00000009925 uc009wcj.2 AF127138 NM_012152 CCDS700 Q9UBY5 10488122 MGI:1929469 RGD:620565 LPAR3 605106 objectId:274 +HGNC:4478 LPAR4 lysophosphatidic acid receptor 4 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "P2Y9|P2Y5-LIKE|P2RY9|LPA4" GPR23 G protein-coupled receptor 23 Lysophosphatidic acid receptors 205 1996-08-16 2008-04-11 2008-04-11 2015-08-25 2846 ENSG00000147145 OTTHUMG00000021895 uc010nme.4 U90322 NM_005296 CCDS14441 Q99677 MGI:1925384 RGD:1563686 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=LPAR4 LPAR4 300086 463829 objectId:94 +HGNC:13307 LPAR5 lysophosphatidic acid receptor 5 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "KPG_010|LPA5" "GPR93|GPR92" G protein-coupled receptor 92 Lysophosphatidic acid receptors 205 2001-11-26 2008-04-11 2008-04-11 2014-11-19 57121 ENSG00000184574 OTTHUMG00000168713 uc001qps.3 AJ272207 NM_020400 CCDS8553 Q9H1C0 "11062477|11574155|16774927|16651401" MGI:2685918 RGD:1562580 LPAR5 606926 objectId:124 +HGNC:15520 LPAR6 lysophosphatidic acid receptor 6 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 P2Y5 P2RY5 purinergic receptor P2Y, G-protein coupled, 5 Lysophosphatidic acid receptors 205 2003-01-28 2009-06-23 2009-06-23 2016-10-05 10161 ENSG00000139679 OTTHUMG00000016895 uc001vcf.4 AF000546 NM_005767 CCDS9410 P43657 "11004484|9755289|19386608" MGI:1914418 RGD:1595950 LPAR6 609239 159166 objectId:163 +HGNC:25718 LPCAT1 lysophosphatidylcholine acyltransferase 1 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "FLJ12443|AGPAT9|AGPAT10" AYTL2 acyltransferase like 2 "1-acylglycerol-3-phosphate O-acyltransferases|EF-hand domain containing" "46|863" 2005-11-03 2007-12-17 2007-12-17 2015-08-26 79888 ENSG00000153395 OTTHUMG00000131017 uc003jcm.4 BC020166 NM_024830 CCDS3864 Q8NF37 "8619474|16704971|18285344" MGI:2384812 RGD:1311599 LPCAT1 610472 "2.3.1.67|2.3.1.23" +HGNC:26032 LPCAT2 lysophosphatidylcholine acyltransferase 2 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 "FLJ20481|AGPAT11|LysoPAFAT" AYTL1 acyltransferase like 1 "1-acylglycerol-3-phosphate O-acyltransferases|EF-hand domain containing" "46|863" 2005-11-03 2007-12-17 2007-12-17 2015-08-26 54947 ENSG00000087253 OTTHUMG00000133238 uc002eie.5 AK000488 NM_017839 CCDS10753 Q7L5N7 "16704971|17182612|20363836" MGI:3606214 RGD:2325051 LPCAT2 612040 "2.3.1.51|2.3.1.23|2.3.1.67" +HGNC:38003 LPCAT2BP lysophosphatidylcholine acyltransferase 2b, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 2010-03-17 2014-11-19 100128094 ENSG00000233228 OTTHUMG00000010112 NG_022792 MGI:1918152 PGOHUM00000244794 +HGNC:30244 LPCAT3 lysophosphatidylcholine acyltransferase 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "C3F|nessy" "OACT5|MBOAT5" "O-acyltransferase (membrane bound) domain containing 5|membrane bound O-acyltransferase domain containing 5" Membrane bound O-acyltransferases 1036 2006-01-20 2008-06-24 2008-06-24 2014-11-19 10162 ENSG00000111684 OTTHUMG00000168970 uc001qsi.4 U72515 NM_005768 CCDS8572 Q6P1A2 "8723724|9074930|18195019" MGI:1315211 RGD:1310223 LPCAT3 611950 +HGNC:30059 LPCAT4 lysophosphatidylcholine acyltransferase 4 protein-coding gene gene with protein product Approved 15q14 15q14 "FLJ10257|LPAAT-eta|LPEAT2" lysophosphatidylethanolamine acyltransferase 2 "AYTL3|AGPAT7" "acyltransferase like 3|1-acylglycerol-3-phosphate O-acyltransferase 7 (lysophosphatidic acid acyltransferase, eta)" 1-acylglycerol-3-phosphate O-acyltransferases 46 2005-11-03 2008-06-24 2008-06-24 2014-11-19 254531 ENSG00000176454 OTTHUMG00000172349 uc001zig.4 AF542964 NM_153613 CCDS32191 Q643R3 "8619474|9110174|16243729|18458083" MGI:2138993 RGD:1311177 LPCAT4 612039 +HGNC:28985 LPGAT1 lysophosphatidylglycerol acyltransferase 1 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "KIAA0205|FAM34A1|NET8" FAM34A family with sequence similarity 34, member A 2004-04-05 2004-11-26 2004-11-25 2014-11-19 9926 ENSG00000123684 OTTHUMG00000037120 uc001hiv.3 D86960 NM_014873 CCDS31018 Q92604 "9039502|15485873" MGI:2446186 RGD:1585897 LPGAT1 610473 +HGNC:31402 LPGAT1P1 lysophosphatidylglycerol acyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 8p12 08p12 "FAM34BP|FAM34A2P" family with sequence similarity 34, member A2 pseudogene 2004-04-05 2004-11-25 2004-11-25 2014-11-19 100129398 NG_022384 +HGNC:13345 LPIN1 lipin 1 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 KIAA0188 Lipins 1043 2001-01-24 2015-08-06 23175 ENSG00000134324 OTTHUMG00000119082 uc002rbt.5 D80010 NM_145693 "CCDS1682|CCDS58699|CCDS58700|CCDS58701" Q14693 "11138012|8724849|16950137" MGI:1891340 RGD:1307646 LPIN1 605518 169944 objectId:1435 3.1.3.4 +HGNC:14450 LPIN2 lipin 2 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 KIAA0249 Lipins 1043 2001-01-24 2016-10-12 9663 ENSG00000101577 OTTHUMG00000131508 uc002klo.3 D87436 NM_014646 CCDS11829 Q92539 "11138012|9039502" MGI:1891341 RGD:1304588 "INFEVERS: The repertory of Familial Mediterranean Fever & Hereditary Inflammatory Disorders Mutations|http://fmf.igh.cnrs.fr/infevers/|LRG_174|http://www.lrg-sequence.org/LRG/LRG_174" LPIN2 605519 123109 objectId:1436 3.1.3.4 +HGNC:14451 LPIN3 lipin 3 protein-coding gene gene with protein product Approved 20q12 20q12 SMP2 LIPN3L lipin 3-like Lipins 1043 2001-01-24 2002-05-23 2016-10-05 64900 ENSG00000132793 OTTHUMG00000033056 uc284pre.1 AL132654 NM_022896 CCDS33469 Q9BQK8 11138012 MGI:1891342 RGD:1588534 LPIN3 605520 objectId:1437 3.1.3.4 +HGNC:6677 LPL lipoprotein lipase protein-coding gene gene with protein product Approved 8p21.3 08p21.3 LIPD Lipases 464 2001-06-22 2016-09-08 4023 ENSG00000175445 OTTHUMG00000036645 uc003wzk.5 NM_000237 CCDS6012 P06858 "3823907|3597382|3692485" MGI:96820 RGD:3017 LPL 609708 123112 3.1.1.34 +HGNC:6678 LPO lactoperoxidase protein-coding gene gene with protein product Approved 17q23.1 17q23.1 SPO 1992-09-23 2014-11-19 4025 ENSG00000167419 OTTHUMG00000178921 uc002ivt.3 M58151 XM_011524808 "CCDS32689|CCDS54149" P22079 "2222811|8964511" MGI:1923363 RGD:1310051 LPO 150205 1.11.1.7 +HGNC:6679 LPP LIM domain containing preferred translocation partner in lipoma protein-coding gene gene with protein product Approved 3q27.3-q28 03q27.3-q28 lipoma preferred partner gene LIM domain-containing preferred translocation partner in lipoma LIM domain containing 1218 1996-07-19 2002-01-14 2016-10-11 4026 ENSG00000145012 OTTHUMG00000156387 uc032sne.1 AL833171 NM_005578 CCDS3291 Q93052 8812423 MGI:2441849 RGD:1310535 LPP 600700 +HGNC:40346 LPP-AS1 LPP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q28 03q28 LPP antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873917 ENSG00000224563 OTTHUMG00000156388 uc032sng.2 NR_046623 +HGNC:27952 LPP-AS2 LPP antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q27.3 03q27.3 "MYCLo-5|MYCLo-6" LPP antisense RNA 2 (non-protein coding) 2011-07-28 2012-08-15 2016-07-13 339929 ENSG00000270959 OTTHUMG00000185119 uc021xip.2 BC042414 NR_036497 "12477932|25663692" +HGNC:14061 LPXN leupaxin protein-coding gene gene with protein product Approved 11q12.1 11q12.1 LDPL LIM domain containing 1218 2000-11-28 2014-11-19 9404 ENSG00000110031 OTTHUMG00000167466 uc001nmw.4 AF062075 NM_004811 "CCDS7969|CCDS53635|CCDS76407" O60711 9565592 MGI:2147677 RGD:1304981 LPXN 605390 +HGNC:6685 LRAT lecithin retinol acyltransferase (phosphatidylcholine--retinol O-acyltransferase) protein-coding gene gene with protein product Approved 4q32.1 04q32.1 LCA14 1999-02-16 2014-11-19 9227 ENSG00000121207 OTTHUMG00000161418 uc063akh.1 AF071510 NM_004744 CCDS3789 O95237 9920938 MGI:1891259 RGD:68362 Mutations of the Lecithin Retinol Acyltransferase Gene|http://www.retina-international.org/files/sci-news/lratmut.htm LRAT 604863 168360 2.3.1.135 +HGNC:1742 LRBA LPS responsive beige-like anchor protein protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "BGL|LAB300|LBA" CDC4L LPS-responsive vesicle trafficking, beach and anchor containing "WD repeat domain containing|BEACH domain containing " "362|1230" 1992-02-14 2001-10-05 2016-03-01 2016-10-05 987 ENSG00000198589 OTTHUMG00000161443 uc003ilu.5 AF216648 XM_005263372 "CCDS3773|CCDS58928" P50851 "1505956|11254716" MGI:1933162 RGD:1311428 LRBA 606453 303168 +HGNC:20309 LRCH1 leucine rich repeats and calponin homology domain containing 1 protein-coding gene gene with protein product Approved 13q14.13-q14.2 13q14.13-q14.2 KIAA1016 CHDC1 "calponin homology (CH) domain containing 1|leucine-rich repeats and calponin homology (CH) domain containing 1" 2003-01-24 2004-05-28 2016-06-06 2016-10-11 23143 ENSG00000136141 OTTHUMG00000016877 uc001vbj.4 AB023233 NM_015116 "CCDS31972|CCDS53865|CCDS53866" Q9Y2L9 10231032 MGI:2443390 RGD:1595678 LRCH1 610368 +HGNC:29292 LRCH2 leucine rich repeats and calponin homology domain containing 2 protein-coding gene gene with protein product Approved Xq23 Xq23 KIAA1495 leucine-rich repeats and calponin homology (CH) domain containing 2 2004-05-27 2016-06-06 2016-10-05 57631 ENSG00000130224 OTTHUMG00000022233 uc010nqe.4 AB040928 NM_020871 "CCDS48155|CCDS59175" Q5VUJ6 10819331 MGI:2147870 RGD:1590569 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=LRCH2 LRCH2 +HGNC:28637 LRCH3 leucine rich repeats and calponin homology domain containing 3 protein-coding gene gene with protein product Approved 3q29 03q29 MGC4126 leucine-rich repeats and calponin homology (CH) domain containing 3 2004-06-03 2016-06-06 2016-06-06 84859 ENSG00000186001 OTTHUMG00000155378 uc011bul.2 AL137527 NM_032773 CCDS3330 Q96II8 12477932 MGI:1917394 RGD:1306200 LRCH3 +HGNC:6691 LRCH4 leucine rich repeats and calponin homology domain containing 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "LRN|LRRN1" leucine-rich repeats and calponin homology (CH) domain containing 4 1998-06-03 2004-05-28 2016-06-06 2016-10-05 4034 ENSG00000077454 OTTHUMG00000159544 uc003uvj.4 AF053356 NM_002319 CCDS34706 O75427 9799793 MGI:1917193 RGD:1306145 LRCH4 +HGNC:44160 LRCOL1 leucine rich colipase like 1 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 2012-07-02 2016-06-06 2016-06-06 100507055 ENSG00000204583 OTTHUMG00000168043 uc021rgr.2 NM_001195520 CCDS73547 A6NCL2 MGI:2686525 RGD:2323402 +HGNC:6688 LRE3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-03-02 +HGNC:6689 LRE4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-03-02 +HGNC:29290 LRFN1 leucine rich repeat and fibronectin type III domain containing 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "KIAA1484|SALM2" "Fibronectin type III domain containing|I-set domain containing" "555|593" 2004-02-02 2015-09-03 57622 ENSG00000128011 OTTHUMG00000182808 uc002okw.3 BC014678 NM_020862 CCDS46071 Q9P244 "10819331|16828986" MGI:2136810 RGD:1304707 LRFN1 612807 +HGNC:21226 LRFN2 leucine rich repeat and fibronectin type III domain containing 2 protein-coding gene gene with protein product Approved 6p21.2-p21.1 06p21.2-p21.1 FIGLER2 fibronectin type III, immunoglobulin and leucine rich repeat domains 2 "KIAA1246|SALM1" KIAA1246 "Fibronectin type III domain containing|I-set domain containing" "555|593" 2003-11-21 2004-02-04 2004-02-02 2016-10-11 57497 ENSG00000156564 OTTHUMG00000014662 uc003oph.2 AB033072 XM_166372 CCDS34443 Q9ULH4 "16495444|16828986" MGI:1917780 RGD:1311831 LRFN2 612808 +HGNC:28370 LRFN3 leucine rich repeat and fibronectin type III domain containing 3 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "MGC2656|SALM4|FIGLER1" fibronectin type III, immunoglobulin and leucine rich repeat domains 1 "Fibronectin type III domain containing|I-set domain containing" "555|593" 2004-02-02 2014-11-19 79414 ENSG00000126243 OTTHUMG00000181740 uc002oco.4 BC003578 NM_024509 CCDS12483 Q9BTN0 "12975309|16495444|16828986" MGI:2442512 RGD:1305567 LRFN3 612809 +HGNC:28456 LRFN4 leucine rich repeat and fibronectin type III domain containing 4 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "MGC3103|SALM3.|FIGLER6" fibronectin type III, immunoglobulin and leucine rich repeat domains 6 "Fibronectin type III domain containing|I-set domain containing" "555|593" 2004-02-02 2015-08-25 78999 ENSG00000173621 OTTHUMG00000167100 uc001ojr.4 BC007718 NM_024036 CCDS8153 Q6PJG9 "16495444|16828986" MGI:2385612 RGD:1585286 LRFN4 612810 +HGNC:20360 LRFN5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding gene gene with protein product Approved 14q21.1 14q21.1 "FIGLER8|SALM5" fibronectin type III, immunoglobulin and leucine rich repeat domains 8 C14orf146 chromosome 14 open reading frame 146 "Fibronectin type III domain containing|I-set domain containing" "555|593" 2003-01-28 2004-02-04 2004-02-02 2014-11-19 145581 ENSG00000165379 OTTHUMG00000140261 uc001wvm.5 AK055365 NM_152447 "CCDS9678|CCDS81800" Q96NI6 16828986 MGI:2144814 RGD:1309357 LRFN5 612811 +HGNC:29480 LRG1 leucine rich alpha-2-glycoprotein 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 LRG leucine rich alpha 2 glycoprotein 2004-02-12 2016-06-06 2016-06-06 116844 ENSG00000171236 OTTHUMG00000182010 uc002mau.4 NM_052972 CCDS12130 P02750 "3856868|12223515" MGI:1924155 RGD:1359464 LRG1 611289 +HGNC:21964 LRGUK leucine rich repeats and guanylate kinase domain containing protein-coding gene gene with protein product Approved 7q33 07q33 "FLJ32786|CFAP246" 2006-10-27 2016-06-06 2016-06-06 136332 ENSG00000155530 OTTHUMG00000155320 uc003vrm.2 AK057348 NM_144648 CCDS5830 Q96M69 25781171 MGI:1921604 RGD:1308226 LRGUK 616478 +HGNC:30299 LRIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "RIF1|FLJ11269" receptor interacting factor 1 C1orf103 chromosome 1 open reading frame 103 2005-06-03 2011-04-15 2011-04-15 2014-11-18 55791 ENSG00000121931 OTTHUMG00000011913 uc001eaa.4 AY190122 NM_018372 "CCDS30800|CCDS41366" Q5T3J3 17455211 MGI:2445214 RGD:1306520 LRIF1 615354 +HGNC:17360 LRIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "LIG-1|DKFZP586O1624|LIG1" "ortholog of mouse integral membrane glycoprotein LIG-1|leucine-rich repeat protein LRIG1" I-set domain containing 593 2002-08-23 2016-06-06 2016-10-05 26018 ENSG00000144749 OTTHUMG00000158727 uc003dmx.4 AB050468 NM_015541 CCDS33783 Q96JA1 "11414704|12234026" MGI:107935 RGD:1306788 LRIG1 608868 +HGNC:20889 LRIG2 leucine rich repeats and immunoglobulin like domains 2 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 KIAA0806 I-set domain containing 593 2003-04-25 2016-06-06 2016-10-05 9860 ENSG00000198799 OTTHUMG00000012133 uc001edf.2 AB018349 NM_014813 CCDS30808 O94898 MGI:2443718 RGD:1309554 LRIG2 608869 328676 +HGNC:30991 LRIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding gene gene with protein product Approved 12q14.1 12q14.1 "FLJ90440|KIAA3016" I-set domain containing 593 2004-04-30 2016-06-06 2016-06-06 121227 ENSG00000139263 OTTHUMG00000169940 uc001sqr.5 AY505340 NM_153377 "CCDS8960|CCDS44933" Q6UXM1 MGI:2443955 RGD:1561255 LRIG3 608870 +HGNC:23404 LRIT1 leucine rich repeat, Ig-like and transmembrane domains 1 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "PAL|DKFZP434K091|FIGLER9" fibronectin type III, immunoglobulin and leucine rich repeat domains 9 LRRC21 leucine rich repeat containing 21 "Fibronectin type III domain containing|I-set domain containing" "555|593" 2003-11-17 2007-06-19 2016-06-06 2016-10-05 26103 ENSG00000148602 OTTHUMG00000018632 uc001kcz.2 AB031547 NM_015613 CCDS7373 Q9P2V4 10777785 MGI:2385320 RGD:628607 LRIT1 616103 +HGNC:23443 LRIT2 leucine rich repeat, Ig-like and transmembrane domains 2 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 AC022389.4 LRRC22 leucine rich repeat containing 22 I-set domain containing 593 2004-06-02 2007-06-19 2016-06-06 2016-10-05 340745 ENSG00000204033 OTTHUMG00000018633 uc001kcy.5 XM_291697 "CCDS31234|CCDS60581" A6NDA9 MGI:2444885 RGD:1564668 LRIT2 +HGNC:24783 LRIT3 leucine rich repeat, Ig-like and transmembrane domains 3 protein-coding gene gene with protein product Approved 4q25 04q25 "FLJ44691|FIGLER4|CSNB1F" fibronectin type III, immunoglobulin and leucine rich repeat domains 4 I-set domain containing 593 2007-06-19 2016-06-06 2016-06-06 345193 ENSG00000183423 OTTHUMG00000132043 uc031sgv.2 AK126648 NM_198506 CCDS3688 Q3SXY7 MGI:2685267 RGD:1559637 LRIT3 615004 322104 +HGNC:6690 LRMP lymphoid restricted membrane protein protein-coding gene gene with protein product Approved 12p12.1 12p12.1 JAW1 lymphoid-restricted membrane protein 1997-10-28 2016-03-10 2016-03-10 4033 ENSG00000118308 OTTHUMG00000170192 uc001rgh.4 NM_006152 CCDS8701 Q12912 8021504 MGI:108424 RGD:1562062 LRMP 602003 +HGNC:6692 LRP1 LDL receptor related protein 1 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "LRP|CD91|LRP1A|APOER" "APR|A2MR" "alpha-2-macroglobulin receptor|low density lipoprotein receptor-related protein 1" "CD molecules|Low density lipoprotein receptors" "471|634" 1991-08-21 2015-11-13 2015-11-13 4035 ENSG00000123384 OTTHUMG00000044412 uc001snd.4 X13916 NM_002332 CCDS8932 Q07954 2548950 MGI:96828 RGD:1307535 LRP1 107770 448482 CD91 +HGNC:51694 LRP1-AS LRP1 antisense RNA non-coding RNA RNA, long non-coding Approved 12q13.3 12q13.3 Long non-coding RNAs 788 2015-05-07 2015-05-19 2015-05-19 105751187 ENSG00000259125 OTTHUMG00000171280 NR_131939 25937287 +HGNC:6693 LRP1B LDL receptor related protein 1B protein-coding gene gene with protein product Approved 2q22.1-q22.2 02q22.1-q22.2 "LRP-DIT|LRPDIT" LRP-deleted in tumors low density lipoprotein receptor-related protein 1B Low density lipoprotein receptors 634 2000-05-02 2015-11-13 2016-10-11 53353 ENSG00000168702 OTTHUMG00000131799 uc002tvj.2 AF176832 NM_018557 CCDS2182 Q9NZR2 10766186 MGI:2151136 LRP1B 608766 +HGNC:6694 LRP2 LDL receptor related protein 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "gp330|DBS" megalin low density lipoprotein receptor-related protein 2 Low density lipoprotein receptors 634 1994-05-04 2015-11-13 2015-11-13 4036 ENSG00000081479 OTTHUMG00000132179 uc002ues.4 NM_004525 CCDS2232 P98164 7959795 MGI:95794 RGD:68407 LRP2 600073 159747 +HGNC:25434 LRP2BP LRP2 binding protein protein-coding gene gene with protein product Approved 4q35.1 04q35.1 DKFZp761O0113 2005-02-23 2014-11-18 55805 ENSG00000109771 OTTHUMG00000160460 uc032ugv.2 AB037746 NM_018409 CCDS3840 Q9P2M1 "10718198|12508107" MGI:1914870 RGD:1305896 LRP2BP +HGNC:6695 LRP3 LDL receptor related protein 3 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "LRP-3|hLRp105" low density lipoprotein receptor-related protein 3 Low density lipoprotein receptors 634 1998-03-02 2015-11-13 2015-11-13 4037 ENSG00000130881 OTTHUMG00000180343 uc010edh.4 AB009462 NM_002333 CCDS12430 O75074 "9693042|7959795" MGI:3584516 RGD:619729 LRP3 603159 +HGNC:6696 LRP4 LDL receptor related protein 4 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "MEGF7|CLSS|LRP-4|SOST2" low density lipoprotein receptor-related protein 4 Low density lipoprotein receptors 634 1998-03-25 2015-11-13 2015-11-13 4038 ENSG00000134569 OTTHUMG00000166700 uc001ndn.5 AB011540 NM_002334 CCDS31478 O75096 9693030 MGI:2442252 RGD:619731 LRP4 604270 233032 +HGNC:44128 LRP4-AS1 LRP4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p11.2 11p11.2 LRP4 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100507401 ENSG00000247675 OTTHUMG00000166699 uc001ndl.4 NR_038909 +HGNC:6697 LRP5 LDL receptor related protein 5 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "LR3|BMND1|HBM|OPS|OPTA1|VBCH2|EVR4" "LRP7|OPPG|EVR1" "osteoporosis pseudoglioma syndrome|exudative vitreoretinopathy 1|low density lipoprotein receptor-related protein 5" Low density lipoprotein receptors 634 1998-04-07 2015-11-13 2016-10-05 4041 ENSG00000162337 OTTHUMG00000167570 uc001ont.4 AF064548 NM_002335 CCDS8181 O75197 "9714764|10049586" MGI:1278315 RGD:1309329 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=LRP5 LRP5 603506 123115 +HGNC:25323 LRP5L LDL receptor related protein 5 like protein-coding gene gene with protein product Approved 22q11.23 22q11.23 DKFZp434O0213 low density lipoprotein receptor-related protein 5-like 2005-10-09 2015-11-13 2015-11-13 91355 ENSG00000100068 OTTHUMG00000150900 uc011ajz.3 AL137651 NM_182492 CCDS33626 A4QPB2 LRP5L +HGNC:6698 LRP6 LDL receptor related protein 6 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 ADCAD2 low density lipoprotein receptor-related protein 6 Low density lipoprotein receptors 634 1998-04-07 2015-11-13 2015-11-13 4040 ENSG00000070018 OTTHUMG00000168540 uc001rah.6 AF074264 XM_006719078 CCDS8647 O75581 9704021 MGI:1298218 RGD:1304749 LRP6 603507 159752 +HGNC:6700 LRP8 LDL receptor related protein 8 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "APOER2|MCI1|LRP-8|HSZ75190" low density lipoprotein receptor-related protein 8, apolipoprotein e receptor Low density lipoprotein receptors 634 1998-08-13 2015-11-13 2015-11-13 7804 ENSG00000157193 OTTHUMG00000008924 uc001cvi.4 D50678 NM_004631 "CCDS578|CCDS579|CCDS580|CCDS30720" Q14114 "8626535|9079678" MGI:1340044 RGD:1305729 LRP8 602600 +HGNC:14553 LRP10 LDL receptor related protein 10 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "DKFZP564C1940|MGC8675|LRP9|MST087|MSTP087" low density lipoprotein receptor-related protein 10 Low density lipoprotein receptors 634 2002-09-09 2015-11-13 2015-11-13 26020 ENSG00000197324 OTTHUMG00000028705 uc001whd.4 AF131760 NM_014045 CCDS9578 Q7Z4F1 11123907 MGI:1929480 RGD:1310471 LRP10 609921 +HGNC:16936 LRP11 LDL receptor related protein 11 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "bA350J20.3|MANSC3" low density lipoprotein receptor-related protein 11 Low density lipoprotein receptors 634 2003-04-15 2015-11-13 2016-10-05 84918 ENSG00000120256 OTTHUMG00000015801 uc003qng.3 AK027641 NM_032832 CCDS5220 Q86VZ4 MGI:2442989 RGD:1308602 LRP11 +HGNC:31708 LRP12 LDL receptor related protein 12 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "ST7|FLJ12929" low density lipoprotein receptor-related protein 12 Low density lipoprotein receptors 634 2004-07-06 2015-11-13 2016-10-05 29967 ENSG00000147650 OTTHUMG00000164892 uc003yma.4 AF166350 NM_013437 "CCDS6303|CCDS47907" Q9Y561 "12809483|14676824" MGI:2443132 RGD:1304943 LRP12 +HGNC:6701 LRPAP1 LDL receptor related protein associated protein 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 HBP44 A2MRAP "low density lipoprotein-related protein-associated protein 1 (alpha-2-macroglobulin receptor-associated protein 1)|low density lipoprotein receptor-related protein associated protein 1" 1993-07-13 2015-11-13 2015-11-13 4043 ENSG00000163956 OTTHUMG00000090299 uc003ghh.5 NM_002337 CCDS3371 P30533 1712782 MGI:96829 RGD:620700 LRPAP1 104225 363060 +HGNC:15714 LRPPRC leucine rich pentatricopeptide repeat containing protein-coding gene gene with protein product Approved 2p21 02p21 "GP130|LRP130" LSFC Leigh syndrome, French-Canadian type (cytochrome oxidase deficiency) 2001-06-04 2015-11-27 2015-11-27 10128 ENSG00000138095 OTTHUMG00000152782 uc002rtr.3 M92439 NM_133259 CCDS33189 P42704 "8012652|8619474|22045337" MGI:1919666 RGD:1306575 LRPPRC 607544 123124 +HGNC:19742 LRR1 leucine rich repeat protein 1 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 "MGC20689|LRR-1" LRR-repeat protein 1 PPIL5 peptidylprolyl isomerase (cyclophilin)-like 5 Cyclophilin peptidylprolyl isomerases 909 2002-11-20 2011-02-02 2011-02-02 2014-11-18 122769 ENSG00000165501 OTTHUMG00000140273 uc001wwn.3 BC030142 NM_203467 "CCDS9686|CCDS9687" Q96L50 "11804328|21074724" MGI:1916956 RGD:1589026 LRR1 609193 +HGNC:14307 LRRC1 leucine rich repeat containing 1 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "dJ523E19.1|LANO|FLJ10775|FLJ11834" leucine-rich repeat-containing 1 2001-01-04 2003-11-19 2016-10-05 55227 ENSG00000137269 OTTHUMG00000014885 uc003pcd.2 AF332199 NM_025168 CCDS4953 Q9BTT6 MGI:2442313 RGD:1549773 LRRC1 608195 +HGNC:14676 LRRC2 leucine rich repeat containing 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 leucine-rich repeat-containing 2 2001-03-06 2003-11-19 2016-10-05 79442 ENSG00000163827 OTTHUMG00000133479 uc003cpu.5 AJ308569 XM_011534110 CCDS2741 Q9BYS8 11896456 MGI:1921499 RGD:1311716 LRRC2 607180 +HGNC:15571 LRRC2-AS1 LRRC2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.3 03p21.3 "LUZP3|LUZPP1|LUZP3P" "leucine zipper protein pseudogene 1|leucine zipper protein 3, pseudogene" 2001-04-24 2012-10-29 2012-10-29 2014-11-19 83598 ENSG00000268324 OTTHUMG00000187144 uc031rzg.2 AJ312775 NR_073385 +HGNC:14965 LRRC3 leucine rich repeat containing 3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 C21orf102 chromosome 21 open reading frame 102 2001-03-30 2002-06-20 2014-11-19 81543 ENSG00000160233 OTTHUMG00000040847 uc002zfa.4 AB058646 NM_030891 CCDS13711 Q9BY71 12036297 MGI:2447899 RGD:628861 LRRC3 +HGNC:43636 LRRC3-AS1 LRRC3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "LRRC3 antisense RNA 1 (non-protein coding)|LRRC3 antisense RNA 1" 2011-12-07 2012-10-17 2012-10-17 100861510 ENSG00000229356 OTTHUMG00000040842 uc031rvy.1 "AA725743|BM703952" NR_047476 +HGNC:28105 LRRC3B leucine rich repeat containing 3B protein-coding gene gene with protein product Approved 3p24.1 03p24.1 LRP15 2004-07-12 2016-10-05 116135 ENSG00000179796 OTTHUMG00000130572 uc003cdp.4 AF396933 NM_052953 CCDS2644 Q96PB8 MGI:2384996 RGD:1311897 LRRC3B +HGNC:40034 LRRC3C leucine rich repeat containing 3C protein-coding gene gene with protein product Approved 17q21.1 17q21.1 2011-05-05 2015-09-03 100505591 ENSG00000204913 OTTHUMG00000179521 uc021twv.2 XM_017024003 CCDS54121 A6NJW4 MGI:2684858 RGD:1563281 LRRC3C +HGNC:1270 LRRC3DN LRRC3 downstream neighbor (non-protein coding) non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 DKFZP434C128 C21orf30 chromosome 21 open reading frame 30 2000-05-23 2011-12-07 2011-12-07 2014-11-19 54083 AL117578 LRRC3DN +HGNC:15586 LRRC4 leucine rich repeat containing 4 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 NAG14 leucine-rich repeat-containing 4 I-set domain containing 593 2001-06-01 2003-11-19 2016-10-05 64101 ENSG00000128594 OTTHUMG00000157563 uc003vmk.4 AF196976 NM_022143 CCDS5799 Q9HBW1 12969517 MGI:2182081 RGD:1560026 LRRC4 610486 +HGNC:25042 LRRC4B leucine rich repeat containing 4B protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "DKFZp761A179|HSM" netrin-G3 ligand LRIG4 leucine-rich repeats and immunoglobulin-like domains 4 "Endogenous ligands|I-set domain containing" "542|593" 2004-02-12 2004-06-16 2004-06-14 2014-11-19 94030 ENSG00000131409 OTTHUMG00000183063 uc002pss.4 BC032460 NM_001080457 CCDS42595 Q9NT99 11441184 MGI:3027390 RGD:1307121 LRRC4B +HGNC:29317 LRRC4C leucine rich repeat containing 4C protein-coding gene gene with protein product Approved 11p12 11p12 "KIAA1580|NGL-1" I-set domain containing 593 2005-09-13 2014-11-19 57689 ENSG00000148948 OTTHUMG00000166383 uc031pzu.2 AB046800 NM_020929 CCDS31464 Q9HCJ2 14595443 MGI:2442636 RGD:1311013 LRRC4C 608817 +HGNC:16725 LRRC6 leucine rich repeat containing 6 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 "TSLRP|LRTP|CILD19" leucine rich testes protein 2004-07-09 2016-10-05 23639 ENSG00000129295 OTTHUMG00000164646 uc064qhs.1 U60666 NM_012472 CCDS6365 Q86X45 "10775177|23122586" MGI:1859553 RGD:1559937 LRRC6 614930 317373 +HGNC:51151 LRRC6P1 leucine rich repeat containing 6 pseudogene 1 pseudogene pseudogene Approved 11p12 11p12 2014-07-30 2014-07-30 100420589 ENSG00000254784 OTTHUMG00000166456 NG_024476 PGOHUM00000290873 +HGNC:18531 LRRC7 leucine rich repeat containing 7 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "KIAA1365|densin-180" PDZ domain containing 1220 2004-11-10 2014-11-19 57554 ENSG00000033122 OTTHUMG00000059194 uc001dep.4 NM_020794 "CCDS645|CCDS81341" Q96NW7 12525888 MGI:2676665 RGD:708527 LRRC7 614453 +HGNC:19027 LRRC8A leucine rich repeat containing 8 family member A protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "KIAA1437|FLJ10337|SWELL1" LRRC8 leucine rich repeat containing 8 Volume regulated anion channel subunits 1158 2003-09-26 2005-06-29 2016-06-03 2016-10-12 56262 ENSG00000136802 OTTHUMG00000020766 uc004bwl.5 AB037858 NM_019594 CCDS35155 Q8IWT6 24725410 MGI:2652847 RGD:1311690 "LRRC8Abase: Mutation registry for Non-Bruton type autosomal dominant agammaglobulinemia|http://structure.bmc.lu.se/idbase/LRRC8Abase/|LRG_80|http://www.lrg-sequence.org/LRG/LRG_80" LRRC8A 608360 123129 +HGNC:30692 LRRC8B leucine rich repeat containing 8 family member B protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "TA-LRRP|KIAA0231" T cell activation leucine repeat rich protein Volume regulated anion channel subunits 1158 2005-06-29 2016-06-03 2016-06-03 23507 ENSG00000197147 OTTHUMG00000010129 uc057ieo.1 AF385436 NM_015350 CCDS724 Q6P9F7 9039502 MGI:2141353 RGD:1563429 LRRC8B 612888 +HGNC:25075 LRRC8C leucine rich repeat containing 8 family member C protein-coding gene gene with protein product Approved 1p22.2 01p22.2 AD158 hypothetical protein AD158 Volume regulated anion channel subunits 1158 2005-06-29 2016-06-03 2016-06-03 84230 ENSG00000171488 OTTHUMG00000010305 uc001dnl.5 NM_032270 CCDS725 Q8TDW0 11230166 MGI:2140839 RGD:1306585 LRRC8C 612889 +HGNC:16992 LRRC8D leucine rich repeat containing 8 family member D protein-coding gene gene with protein product Approved 1p22.2 01p22.2 FLJ10470 LRRC5 leucine rich repeat containing 5 Volume regulated anion channel subunits 1158 2001-10-30 2005-06-29 2016-06-03 2016-06-03 55144 ENSG00000171492 OTTHUMG00000010583 uc001dnm.4 AK001332 NM_018103 CCDS726 Q7L1W4 MGI:1922368 RGD:1309601 LRRC8D 612890 +HGNC:26272 LRRC8E leucine rich repeat containing 8 family member E protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ23420 Volume regulated anion channel subunits 1158 2005-06-29 2016-06-03 2016-06-03 80131 ENSG00000171017 OTTHUMG00000182455 uc031rje.2 NM_025061 CCDS12189 Q6NSJ5 12477932 MGI:1919517 RGD:1311979 LRRC8E 612891 +HGNC:19848 LRRC9 leucine rich repeat containing 9 other unknown Approved 14q23.1 14q23.1 FLJ46156 leucine-rich repeat-containing 9 2002-11-27 2003-11-19 2015-09-11 341883 ENSG00000131951 OTTHUMG00000028948 uc059cce.1 AK128037 NR_075071 Q6ZRR7 MGI:1925507 RGD:1565716 +HGNC:20264 LRRC10 leucine rich repeat containing 10 protein-coding gene gene with protein product Approved 12q15 12q15 "HRLRRP|LRRC10A" 2004-06-22 2015-03-03 376132 ENSG00000198812 OTTHUMG00000169384 uc001svc.4 AK095935 NM_201550 CCDS31856 Q5BKY1 14751244 MGI:2448063 RGD:1307358 LRRC10 610846 +HGNC:37215 LRRC10B leucine rich repeat containing 10B protein-coding gene gene with protein product Approved 11q12.2 11q12.2 2009-09-08 2009-09-08 390205 ENSG00000204950 OTTHUMG00000168178 uc010rlk.2 NM_001145077 CCDS44621 A6NIK2 MGI:2685551 RGD:1564983 LRRC10B +HGNC:20419 LRRC14 leucine rich repeat containing 14 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "KIAA0014|LRRC14A" 2004-01-15 2012-08-20 9684 ENSG00000160959 OTTHUMG00000165179 uc003zdk.4 BC011377 NM_014665 CCDS6432 Q15048 7584026 MGI:2445060 RGD:1560202 LRRC14 +HGNC:37268 LRRC14B leucine rich repeat containing 14B protein-coding gene gene with protein product Approved 5p15.33 05p15.33 2009-09-10 2010-02-17 389257 ENSG00000185028 OTTHUMG00000161578 uc003jal.1 NM_001080478 CCDS47184 A6NHZ5 MGI:2145269 RGD:1564978 LRRC14B +HGNC:20818 LRRC15 leucine rich repeat containing 15 protein-coding gene gene with protein product Approved 3q29 03q29 LIB 2003-04-25 2015-08-27 131578 ENSG00000172061 OTTHUMG00000156048 uc003ftu.3 AB071037 NM_001135057 "CCDS3306|CCDS46984" Q8TF66 12923058 MGI:1921738 RGD:70551 LRRC15 +HGNC:16895 LRRC17 leucine rich repeat containing 17 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "P37NB|H_RG318M05.3" 2003-08-07 2014-11-18 10234 ENSG00000128606 OTTHUMG00000157210 uc003vau.4 U32907 NM_005824 "CCDS5727|CCDS34721" Q8N6Y2 "8982252|19336404" MGI:1921761 RGD:1560165 LRRC17 +HGNC:23199 LRRC18 leucine rich repeat containing 18 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 "UNQ933|MGC34773|UNQ9338|VKGE9338" 2004-05-27 2014-11-19 474354 ENSG00000165383 OTTHUMG00000018182 uc057tdu.1 AY358137 NM_001006939 CCDS31197 Q8N456 MGI:1914830 RGD:1311738 LRRC18 +HGNC:23379 LRRC19 leucine rich repeat containing 19 protein-coding gene gene with protein product Approved 9p21.2 09p21.2 FLJ21302 2003-11-14 2016-10-05 64922 ENSG00000184434 OTTHUMG00000019710 uc003zqh.4 AK024955 NM_022901 CCDS6518 Q9H756 MGI:2140219 RGD:1591722 LRRC19 +HGNC:23421 LRRC20 leucine rich repeat containing 20 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "FLJ10751|FLJ10844" 2004-04-15 2016-10-05 55222 ENSG00000172731 OTTHUMG00000018407 uc031pvr.2 BC024001 NM_018239 "CCDS7300|CCDS7301|CCDS7302|CCDS73145" Q8TCA0 MGI:2387182 RGD:1566140 LRRC20 +HGNC:19138 LRRC23 leucine rich repeat containing 23 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "B7|LRPB7" 2006-01-24 2016-10-05 10233 ENSG00000010626 OTTHUMG00000156668 uc001qrp.4 BC014450 NM_006992 "CCDS8568|CCDS8569" Q53EV4 "11830501|11826754" MGI:1315192 RGD:1304779 LRRC23 +HGNC:28947 LRRC24 leucine rich repeat containing 24 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 LRRC14OS I-set domain containing 593 2005-10-05 2015-08-25 441381 ENSG00000254402 OTTHUMG00000165180 uc003zdm.4 AB178281 NM_001024678 CCDS34969 Q50LG9 7584026 MGI:3605040 RGD:1308720 LRRC24 +HGNC:29806 LRRC25 leucine rich repeat containing 25 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "MAPA|FLJ38116" 2004-02-18 2014-11-19 126364 ENSG00000175489 OTTHUMG00000183361 uc002niw.4 AK095435 NM_145256 CCDS12377 Q8N386 12384430 MGI:2445284 RGD:1564818 LRRC25 607518 +HGNC:31409 LRRC26 leucine rich repeat containing 26 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "bA350O14.10|OTTHUMG00000020980" 2004-06-02 2015-08-25 389816 ENSG00000184709 OTTHUMG00000020980 uc004clp.4 DQ355157 NM_001013653 CCDS35184 Q2I0M4 22547800 MGI:2385129 RGD:1308398 LRRC26 613505 +HGNC:29346 LRRC27 leucine rich repeat containing 27 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 KIAA1674 2004-04-23 2014-11-19 80313 ENSG00000148814 OTTHUMG00000019284 uc010quw.2 AB051461 XM_290462 "CCDS31316|CCDS44496|CCDS44495" Q9C0I9 11214970 MGI:1923862 RGD:1559981 LRRC27 +HGNC:28355 LRRC28 leucine rich repeat containing 28 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "MGC24976|FLJ34269|FLJ45242" 2004-06-29 2014-11-18 123355 ENSG00000168904 OTTHUMG00000149854 uc002bva.3 AK091588 NM_144598 "CCDS10380|CCDS66873" Q86X40 12975309 MGI:1915689 RGD:1307209 LRRC28 +HGNC:13605 LRRC29 leucine rich repeat containing 29 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FBL9 FBXL9 F-box and leucine-rich repeat protein 9 2000-09-27 2004-08-26 2004-08-23 2014-11-19 26231 ENSG00000125122 OTTHUMG00000154403 uc002esg.4 AF176701 NM_012163 CCDS32465 Q8WV35 10531037 MGI:2443262 RGD:1593150 LRRC29 +HGNC:30219 LRRC30 leucine rich repeat containing 30 protein-coding gene gene with protein product Approved 18p11.23 18p11.23 2005-01-06 2015-08-25 339291 ENSG00000206422 OTTHUMG00000178479 uc010wzk.3 XM_292678 CCDS42409 A6NM36 MGI:2685172 RGD:1563832 LRRC30 +HGNC:26261 LRRC31 leucine rich repeat containing 31 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 FLJ23259 2005-01-24 2015-08-25 79782 ENSG00000114248 OTTHUMG00000164421 uc003fgc.3 AK026912 NM_024727 "CCDS43167|CCDS63832|CCDS63833" Q6UY01 12975309 MGI:2443864 RGD:1561499 LRRC31 +HGNC:4161 LRRC32 leucine rich repeat containing 32 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "D11S833E|GARP" glycoprotein A repetitions predominant 1994-12-15 2005-02-25 2005-02-25 2016-10-05 2615 ENSG00000137507 OTTHUMG00000133687 uc001oxr.4 Z24680 NM_005512 CCDS8245 Q14392 "8180135|1543912" MGI:93882 RGD:1309087 LRRC32 137207 +HGNC:28408 LRRC34 leucine rich repeat containing 34 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 MGC27085 2005-02-25 2016-04-25 151827 ENSG00000171757 OTTHUMG00000164419 uc003ffx.4 AK095125 NM_153353 "CCDS3208|CCDS54672" Q8IZ02 12477932 MGI:1919077 RGD:1565052 LRRC34 +HGNC:49887 LRRC34P1 leucine rich repeat containing 34 pseudogene 1 pseudogene pseudogene Approved 12p12.1 12p12.1 2014-03-18 2014-03-18 100288378 ENSG00000256371 OTTHUMG00000169102 NG_021708 PGOHUM00000239705 +HGNC:49888 LRRC34P2 leucine rich repeat containing 34 pseudogene 2 pseudogene pseudogene Approved 4q12 04q12 2014-03-18 2014-03-18 100420613 ENSG00000250464 OTTHUMG00000160652 NG_025106 PGOHUM00000245536 +HGNC:25615 LRRC36 leucine rich repeat containing 36 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ11004 2005-04-05 2015-08-25 55282 ENSG00000159708 OTTHUMG00000173030 uc002esv.4 BC026156 NM_018296 "CCDS32467|CCDS58474" Q1X8D7 12477932 MGI:2448585 RGD:1303118 LRRC36 +HGNC:29069 LRRC37A leucine rich repeat containing 37A protein-coding gene gene with protein product Approved 17q21.31 17q21.31 KIAA0563 2005-04-15 2015-09-03 9884 ENSG00000176681 OTTHUMG00000149841 uc002ikg.3 BC040501 NM_014834 CCDS11504 A6NMS7 "9628581|15533724" "MGI:2685097|MGI:2685730" LRRC37A 616555 +HGNC:32404 LRRC37A2 leucine rich repeat containing 37 member A2 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ45049 c114 SLIT-like testicular protein 2006-10-23 2016-06-03 2016-06-03 474170 ENSG00000238083 OTTHUMG00000178032 uc002ikn.2 AY386262 NM_001006607 CCDS42353 A6NM11 "MGI:2685097|MGI:2685730" LRRC37A2 616556 +HGNC:32427 LRRC37A3 leucine rich repeat containing 37 member A3 protein-coding gene gene with protein product Approved 17q24.1 17q24.1 "FLJ34306|KIAA0563" 2006-10-23 2016-06-03 2016-06-03 374819 ENSG00000176809 OTTHUMG00000132307 uc002jey.3 AB011135 NM_199340 "CCDS32708|CCDS77091" O60309 "MGI:2685097|MGI:2685730" LRRC37A3 616557 +HGNC:25479 LRRC37A4P leucine rich repeat containing 37 member A4, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 FLJ10120 LRRC37A4 2007-08-02 2012-03-07 2016-06-03 2016-06-03 55073 ENSG00000214425 OTTHUMG00000179212 AK000982 NR_002940 PGOHUM00000262955 +HGNC:23369 LRRC37A5P leucine rich repeat containing 37 member A5, pseudogene pseudogene pseudogene Approved 9q31.3 09q31.3 C9orf29 chromosome 9 open reading frame 29 2005-12-09 2012-03-07 2016-06-03 2016-06-03 652972 ENSG00000204173 OTTHUMG00000020494 BC031236 NR_034087 Q49AS3 PGOHUM00000263227 +HGNC:33746 LRRC37A6P leucine rich repeat containing 37 member A6, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 LRRC37E 2012-03-07 2016-06-03 2016-06-03 387646 ENSG00000230445 OTTHUMG00000017852 NR_003525 23064749 PGOHUM00000238378 +HGNC:43792 LRRC37A7P leucine rich repeat containing 37 member A7, pseudogene pseudogene pseudogene Approved 18q12.1 18q12.1 2012-03-07 2016-06-03 2016-06-03 100421589 ENSG00000265158 OTTHUMG00000179653 NG_026286 PGOHUM00000234912 +HGNC:43793 LRRC37A8P leucine rich repeat containing 37 member A8, pseudogene pseudogene pseudogene Approved 17q12 17q12 2012-03-13 2016-06-03 2016-06-03 100533789 NG_028731 PGOHUM00000237040 +HGNC:43813 LRRC37A9P leucine rich repeat containing 37 member A9, pseudogene pseudogene pseudogene Approved 17q12 17q12 2012-03-13 2016-06-03 2016-06-03 100533790 ENSG00000271013 OTTHUMG00000188398 NG_028732 PGOHUM00000237042 +HGNC:43814 LRRC37A10P leucine rich repeat containing 37 member A10, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 2012-03-13 2016-06-03 2016-06-03 100533791 NG_028733 PGOHUM00000237080 +HGNC:43815 LRRC37A11P leucine rich repeat containing 37 member A11, pseudogene pseudogene pseudogene Approved 17q12 17q12 LRRC37F 2012-03-13 2016-06-03 2016-06-03 342666 ENSG00000214553 OTTHUMG00000133184 NR_033753 23064749 PGOHUM00000237383 +HGNC:43816 LRRC37A12P leucine rich repeat containing 37 member A12, pseudogene pseudogene pseudogene Approved 1p35.1 01p35.1 2012-03-13 2016-06-03 2016-06-03 101929254 ENSG00000229259 OTTHUMG00000038009 NG_042886 PGOHUM00000243962 +HGNC:43817 LRRC37A13P leucine rich repeat containing 37 member A13, pseudogene pseudogene pseudogene Approved 11q23.2 11q23.2 2012-03-13 2016-06-03 2016-06-03 106479024 ENSG00000257101 OTTHUMG00000168196 NG_044288 PGOHUM00000242899 +HGNC:43818 LRRC37A14P leucine rich repeat containing 37 member A14, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 2012-03-13 2016-06-03 2016-06-03 106479025 ENSG00000215771 OTTHUMG00000150935 NG_044297 PGOHUM00000246339 +HGNC:43819 LRRC37A15P leucine rich repeat containing 37 member A15, pseudogene pseudogene pseudogene Approved 4q24 04q24 2012-03-13 2016-06-03 2016-06-03 106481796 ENSG00000230069 OTTHUMG00000161081 NG_045650 PGOHUM00000250726 +HGNC:43820 LRRC37A16P leucine rich repeat containing 37 member A16, pseudogene pseudogene pseudogene Approved 17q24.2 17q24.2 LRRC37C 2012-03-13 2016-06-03 2016-06-03 651250 ENSG00000267023 OTTHUMG00000180160 NG_023507 23064749 PGOHUM00000237165 +HGNC:48365 LRRC37A17P leucine rich repeat containing 37 member A17, pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 LRRC37A5 "leucine rich repeat containing 37, member A17, pseudogene|leucine-rich repeat containing 37 member A17, pseudogene" 2013-05-14 2016-06-03 2016-06-03 644397 ENSG00000263142 OTTHUMG00000178082 NG_028735 23064749 PGOHUM00000237421 +HGNC:29070 LRRC37B leucine rich repeat containing 37B protein-coding gene gene with protein product Approved 17q11.2 17q11.2 KIAA0563-related 2005-04-15 2005-08-09 2015-09-03 114659 ENSG00000185158 OTTHUMG00000132785 uc060dsu.1 AJ314647 NM_052888 "CCDS32609|CCDS82102" Q96QE4 "11468690|10843809" RGD:735046 LRRC37B 616558 +HGNC:25390 LRRC37BP1 leucine rich repeat containing 37B pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 DKFZp667M2411 LRRC37B2 leucine rich repeat containing 37, member B2 2007-08-16 2010-08-16 2010-08-16 2014-11-19 147172 ENSG00000250462 OTTHUMG00000132795 BC118647 NR_015341 +HGNC:27005 LRRC38 leucine rich repeat containing 38 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 2005-05-19 2015-04-07 126755 ENSG00000162494 OTTHUMG00000007918 uc001avb.4 BC016048 NM_001010847 CCDS53269 Q5VT99 22547800 MGI:2442845 RGD:1311416 LRRC38 615212 +HGNC:28228 LRRC39 leucine rich repeat containing 39 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 MGC14816 2005-05-23 2016-10-05 127495 ENSG00000122477 OTTHUMG00000010839 uc057iqj.1 AK096892 NM_144620 "CCDS766|CCDS58014" Q96DD0 12975309 MGI:1924557 RGD:1585106 LRRC39 +HGNC:26004 LRRC40 leucine rich repeat containing 40 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 FLJ20331 2005-05-23 2015-08-27 55631 ENSG00000066557 OTTHUMG00000009348 uc001der.3 NM_017768 CCDS646 Q9H9A6 12477932 MGI:1914394 RGD:1562017 LRRC40 +HGNC:16917 LRRC41 leucine rich repeat containing 41 protein-coding gene gene with protein product Approved 1p34.1-p33 01p34.1-p33 MUF1 2005-05-24 2016-10-11 10489 ENSG00000132128 OTTHUMG00000007810 uc001cpn.4 AK024051 NM_006369 CCDS533 Q15345 11384984 MGI:2441984 RGD:1311221 LRRC41 +HGNC:28792 LRRC42 leucine rich repeat containing 42 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 MGC8974 2005-05-24 2016-10-05 115353 ENSG00000116212 OTTHUMG00000008436 uc001cwk.3 AK075201 NM_052940 CCDS585 Q9Y546 12477932 MGI:1925059 RGD:1308919 LRRC42 +HGNC:28562 LRRC43 leucine rich repeat containing 43 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 MGC35140 2005-05-26 2015-08-27 254050 ENSG00000158113 OTTHUMG00000168915 uc009zxm.4 AK124107 NM_152759 CCDS45001 Q8N309 12477932 MGI:2685907 RGD:1561461 LRRC43 +HGNC:28302 LRRC45 leucine rich repeat containing 45 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 MGC20806 2005-05-26 2016-03-30 201255 ENSG00000169683 OTTHUMG00000178454 uc002kde.4 BC014109 NM_144999 CCDS11797 Q96CN5 "12477932|24035387" MGI:2387183 RGD:1590053 LRRC45 +HGNC:25047 LRRC46 leucine rich repeat containing 46 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 MGC16309 2005-05-26 2005-08-09 90506 ENSG00000141294 OTTHUMG00000178289 uc002ima.3 NM_033413 CCDS11518 Q96FV0 12477932 MGI:1916547 RGD:1303311 LRRC46 +HGNC:29207 LRRC47 leucine rich repeat containing 47 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "KIAA1185|RP1-286D6.3" 2005-05-26 2014-11-19 57470 ENSG00000130764 OTTHUMG00000003506 uc001akx.2 AB033011 NM_020710 CCDS51 Q8N1G4 10574461 MGI:1920196 RGD:1308599 LRRC47 +HGNC:25965 LRRC49 leucine rich repeat containing 49 protein-coding gene gene with protein product Approved 15q23 15q23 FLJ20156 2005-05-26 2005-08-09 54839 ENSG00000137821 OTTHUMG00000172182 uc002asw.5 NM_017691 "CCDS32282|CCDS55971|CCDS58376|CCDS61694" Q8IUZ0 12477932 MGI:2442689 RGD:1309466 LRRC49 +HGNC:32156 LRRC52 leucine rich repeat containing 52 protein-coding gene gene with protein product Approved 1q24.1 01q24.1 FLJ25811 2005-07-25 2016-10-05 440699 ENSG00000162763 OTTHUMG00000034625 uc001gde.3 AK098677 NM_001005214 CCDS30930 Q8N7C0 22547800 MGI:1924118 RGD:1312014 LRRC52 615218 +HGNC:25255 LRRC53 leucine rich repeat containing 53 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 2007-12-14 2014-11-19 100144878 ENSG00000162621 OTTHUMG00000009621 uc057hqj.1 A6NM62 LRRC53 +HGNC:32324 LRRC55 leucine rich repeat containing 55 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 FLJ45686 2005-10-10 2015-08-25 219527 ENSG00000183908 OTTHUMG00000159309 uc001njl.3 NM_001005210 CCDS31539 Q6ZSA7 22547800 MGI:2685197 RGD:1561726 LRRC55 615213 +HGNC:25430 LRRC56 leucine rich repeat containing 56 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "FLJ00101|DKFZp761L1518" 2005-10-18 2014-11-19 115399 ENSG00000161328 OTTHUMG00000132003 uc010qvz.3 NM_198075 CCDS7700 Q8IYG6 12477932 MGI:1917802 RGD:1311654 LRRC56 +HGNC:26719 LRRC57 leucine rich repeat containing 57 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 FLJ36812 2005-10-25 2016-10-05 255252 ENSG00000180979 OTTHUMG00000130679 uc001zqd.3 AK094891 NM_153260 CCDS10089 Q8N9N7 MGI:1913856 RGD:1307128 LRRC57 +HGNC:26968 LRRC58 leucine rich repeat containing 58 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 2006-01-06 2006-01-06 116064 ENSG00000163428 OTTHUMG00000159407 uc003edr.3 BC013757 XM_057296 CCDS46892 Q96CX6 MGI:2443542 RGD:1307440 LRRC58 +HGNC:28817 LRRC59 leucine rich repeat containing 59 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "PRO1855|FLJ21675" 2006-01-12 2006-01-12 2014-11-19 55379 ENSG00000108829 OTTHUMG00000162079 uc002iqt.4 AK025328 NM_018509 CCDS11566 Q96AG4 12477932 MGI:2138133 RGD:1305092 LRRC59 614854 +HGNC:21704 LRRC61 leucine rich repeat containing 61 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "MGC3036|FLJ31392|HSPC295" 2006-02-06 2015-08-25 65999 ENSG00000127399 OTTHUMG00000158326 uc003wgx.4 BC001354 NM_023942 CCDS5901 Q9BV99 MGI:2652848 RGD:1561800 LRRC61 +HGNC:34296 LRRC63 leucine rich repeat containing 63 protein-coding gene gene with protein product Approved 13q14.13 13q14.13 RP11-139H14.4 2008-06-11 2016-10-05 220416 ENSG00000173988 OTTHUMG00000016866 uc001vbc.4 XM_001718341 CCDS61325 Q05C16 MGI:1918109 RGD:1559507 LRRC63 +HGNC:34299 LRRC66 leucine rich repeat containing 66 protein-coding gene gene with protein product Approved 4q12 04q12 2008-06-11 2014-11-19 339977 ENSG00000188993 OTTHUMG00000160623 uc003gzi.4 BC040414 NM_001024611 CCDS43229 Q68CR7 MGI:2387634 RGD:1306094 LRRC66 +HGNC:34303 LRRC69 leucine rich repeat containing 69 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 2008-06-11 2014-11-19 100130742 ENSG00000214954 OTTHUMG00000164023 uc010mal.2 AK130865 NM_001129890 Q6ZNQ3 MGI:1920564 RGD:1583733 LRRC69 +HGNC:35155 LRRC70 leucine rich repeat containing 70 protein-coding gene gene with protein product Approved 5q12.1 05q12.1 "SLRN|LOC100130733" synleurin 2008-12-18 2015-09-03 100130733 ENSG00000186105 OTTHUMG00000154401 uc011cqs.1 XR_042302 CCDS47218 Q7Z2Q7 LRRC70 +HGNC:26556 LRRC71 leucine rich repeat containing 71 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 FLJ32884 C1orf92 chromosome 1 open reading frame 92 2005-05-27 2011-02-14 2011-02-14 2014-11-19 149499 ENSG00000160838 OTTHUMG00000041298 uc001fqm.3 BC033790 NM_144702 CCDS44249 Q8N4P6 14702039 MGI:1921735 RGD:1309453 LRRC71 +HGNC:42972 LRRC72 leucine rich repeat containing 72 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 2011-10-07 2011-10-07 100506049 ENSG00000205858 OTTHUMG00000152446 uc022aaf.2 NM_001195280 CCDS56464 A6NJI9 MGI:1920830 RGD:1560395 +HGNC:21375 LRRC73 leucine rich repeat containing 73 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 dJ337H4.2 C6orf154 chromosome 6 open reading frame 154 2003-11-03 2011-11-25 2011-11-25 2015-08-25 221424 ENSG00000204052 OTTHUMG00000014737 uc003ovk.3 NM_001012974 CCDS34456 Q5JTD7 MGI:2684934 RGD:1561390 +HGNC:23346 LRRC74A leucine rich repeat containing 74A protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "C14orf166B|LRRC74" "chromosome 14 open reading frame 166B|LRRC74|leucine rich repeat containing 74" 2004-06-25 2014-07-30 2014-07-30 2014-07-30 145497 ENSG00000100565 OTTHUMG00000150153 AK058106 NM_194287 CCDS9853 Q0VAA2 MGI:3646959 RGD:1564488 +HGNC:34301 LRRC74B leucine rich repeat containing 74B protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2014-07-30 2014-11-19 400891 ENSG00000187905 OTTHUMG00000150897 BC028231 XR_937850 CCDS77654 Q6ZQY2 MGI:1921935 RGD:2319134 +HGNC:32403 LRRC75A leucine rich repeat containing 75A protein-coding gene gene with protein product Approved 17p11.2 17p11.2 FLJ35696 "C17orf76|FAM211A" "chromosome 17 open reading frame 76|family with sequence similarity 211, member A" 2006-01-13 2014-03-11 2014-03-11 2014-11-19 388341 ENSG00000181350 OTTHUMG00000058988 AK093015 NM_207387 "CCDS11178|CCDS45620" Q8NAA5 14702039 MGI:2682293 RGD:1595947 +HGNC:28619 LRRC75A-AS1 LRRC75A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 MGC40157 "C17orf45|NCRNA00188|C17orf76-AS1|FAM211A-AS1" "chromosome 17 open reading frame 45|non-protein coding RNA 188|C17orf76 antisense RNA 1 (non-protein coding)|C17orf76 antisense RNA 1|FAM211A antisense RNA 1" 2005-12-13 2014-03-11 2014-03-11 2014-11-18 125144 ENSG00000175061 OTTHUMG00000058990 BC027986 NR_027160 Q8N1F1 12477932 +HGNC:33155 LRRC75B leucine rich repeat containing 75B protein-coding gene gene with protein product Approved 22q11.23 22q11.23 MGC131773 "C22orf36|FAM211B" "chromosome 22 open reading frame 36|family with sequence similarity 211, member B" 2006-10-16 2014-03-11 2014-03-11 2014-11-19 388886 ENSG00000178026 OTTHUMG00000150729 AK097054 NM_207644 CCDS42991 Q2VPJ9 MGI:2143657 RGD:2318441 +HGNC:29373 LRRCC1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding gene gene with protein product Approved 8q21.2 08q21.2 "KIAA1764|CLERC|VFL1" "centrosomal leucine-rich repeat and coiled-coil containing protein|variable number of flagella 1 homolog (Chlamydomonas)" leucine rich repeat and coiled-coil domain containing 1 2005-08-18 2012-04-10 2015-08-25 85444 ENSG00000133739 OTTHUMG00000164784 uc003ycw.4 BC030701 NM_033402 CCDS43750 Q9C099 "11214970|18728398" MGI:1918960 RGD:628722 LRRCC1 +HGNC:34300 LRRD1 leucine rich repeats and death domain containing 1 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 IMAGE:4798971 2011-05-23 2016-06-06 2016-06-06 401387 ENSG00000240720 OTTHUMG00000155861 uc064fgw.1 BC026112 NM_001045475 CCDS55124 A4D1F6 MGI:3045299 RGD:1562785 LRRD1 +HGNC:6702 LRRFIP1 LRR binding FLII interacting protein 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "FLAP-1|FLIIAP1|TRIP|GCF-2|HUFI-1" GC-binding factor 2 leucine rich repeat (in FLII) interacting protein 1 1999-02-15 2016-06-20 2016-06-20 9208 ENSG00000124831 OTTHUMG00000133339 uc002vxd.4 AJ223075 NM_004735 "CCDS2521|CCDS46551|CCDS46552|CCDS46553" Q32MZ4 "9705290|9525888|16199883" MGI:1342770 RGD:1359548 LRRFIP1 603256 +HGNC:32937 LRRFIP1P1 LRR binding FLII interacting protein 1 pseudogene 1 pseudogene pseudogene Approved 3q26.32 03q26.32 leucine rich repeat (in FLII) interacting protein 1 pseudogene 1 2010-09-30 2016-06-27 2016-06-27 101290506 ENSG00000240429 OTTHUMG00000157336 NG_033175 PGOHUM00000237876 +HGNC:6703 LRRFIP2 LRR binding FLII interacting protein 2 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 HUFI-2 leucine rich repeat (in FLII) interacting protein 2 1999-02-15 2016-06-20 2016-10-05 9209 ENSG00000093167 OTTHUMG00000130796 uc003cgt.4 AF115509 NM_006309 "CCDS2664|CCDS2665|CCDS46791|CCDS63592" Q9Y608 10366446 MGI:1918518 RGD:1306234 LRRFIP2 614043 +HGNC:25708 LRRIQ1 leucine rich repeats and IQ motif containing 1 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 "FLJ12303|KIAA1801" 2004-09-01 2016-06-03 2016-10-05 84125 ENSG00000133640 OTTHUMG00000166185 uc001tac.4 AK022365 NM_032165 CCDS41816 Q96JM4 11347906 MGI:1922228 RGD:1564903 LRRIQ1 +HGNC:28318 LRRIQ3 leucine rich repeats and IQ motif containing 3 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 MGC22773 LRRC44 leucine rich repeat containing 44 2005-05-26 2008-06-12 2016-06-03 2016-06-03 127255 ENSG00000162620 OTTHUMG00000009508 uc001dfy.5 BX647210 NM_145258 CCDS41350 A6PVS8 12477932 MGI:1921685 RGD:1591943 LRRIQ3 +HGNC:34298 LRRIQ4 leucine rich repeats and IQ motif containing 4 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 LRRC64 leucine rich repeat containing 64 2008-06-11 2008-06-12 2016-06-03 2016-06-03 344657 ENSG00000188306 OTTHUMG00000164420 uc003fgb.4 NM_001080460 CCDS46951 A6NIV6 MGI:1915557 RGD:2323202 LRRIQ4 +HGNC:18608 LRRK1 leucine rich repeat kinase 1 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "FLJ23119|KIAA1790|Roco1|RIPK6" 2004-01-22 2016-06-06 2016-06-06 79705 ENSG00000154237 OTTHUMG00000165514 uc002bwr.4 AB058693 NM_024652 CCDS42086 Q38SD2 "11347906|14654223" MGI:2142227 RGD:1308000 LRRK1 610986 objectId:2058 +HGNC:18618 LRRK2 leucine rich repeat kinase 2 protein-coding gene gene with protein product Approved 12q12 12q12 "ROCO2|DKFZp434H2111|FLJ45829|RIPK7" PARK8 Parkinson disease (autosomal dominant) 8 Parkinson disease associated genes 672 2004-10-22 2016-06-06 2016-06-06 120892 ENSG00000188906 OTTHUMG00000059742 uc001rmg.5 AK026776 XM_058513 CCDS31774 Q5S007 15541308 MGI:1913975 RGD:1561168 Parkinson's disease Mutation Database|http://grenada.lumc.nl/LOVD2/TPI/home.php?select_db=LRRK2 LRRK2 609007 123301 objectId:2059 +HGNC:20980 LRRN1 leucine rich repeat neuronal 1 protein-coding gene gene with protein product Approved 3p26.2 03p26.2 FIGLER3 fibronectin type III, immunoglobulin and leucine rich repeat domains 3 I-set domain containing 593 2003-04-25 2014-11-19 57633 ENSG00000175928 OTTHUMG00000154934 uc003bpt.4 AB040930 NM_020873 CCDS33685 Q6UXK5 10819331 MGI:106038 RGD:1564145 LRRN1 +HGNC:16914 LRRN2 leucine rich repeat neuronal 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "GAC1|LRANK1|FIGLER7" "leucine rich and ankyrin repeats 1|fibronectin type III, immunoglobulin and leucine rich repeat domain 7" LRRN5 leucine rich repeat neuronal 5 I-set domain containing 593 2004-02-05 2007-01-31 2007-01-31 2014-11-19 10446 ENSG00000170382 OTTHUMG00000035989 uc001hbf.3 AF030435 NM_006338 CCDS1448 O75325 9662332 MGI:106037 RGD:1305482 LRRN2 605492 +HGNC:17200 LRRN3 leucine rich repeat neuronal 3 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 "NLRR3|FLJ11129|FIGLER5" fibronectin type III, immunoglobulin and leucine rich repeat domains 5 "Fibronectin type III domain containing|I-set domain containing" "555|593" 2001-11-19 2014-11-19 54674 ENSG00000173114 OTTHUMG00000155039 uc003vft.5 AB060967 NM_018334 CCDS5754 Q9H3W5 11549284 MGI:106036 RGD:71066 LRRN3 +HGNC:16208 LRRN4 leucine rich repeat neuronal 4 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "dJ1056H1.1|NLRR4" C20orf75 chromosome 20 open reading frame 75 Fibronectin type III domain containing 555 2001-07-17 2008-05-20 2008-05-20 2014-11-19 164312 ENSG00000125872 OTTHUMG00000031825 uc002wmo.4 AL118505 NM_152611 CCDS13097 Q8WUT4 15870286 MGI:2445154 RGD:1305256 LRRN4 +HGNC:33724 LRRN4CL LRRN4 C-terminal like protein-coding gene gene with protein product Approved 11q12.3 11q12.3 Fibronectin type III domain containing 555 2008-05-20 2014-11-19 221091 ENSG00000177363 OTTHUMG00000167581 uc001nun.3 AK291334 NM_203422 CCDS8030 Q8ND94 MGI:1916102 RGD:1597359 LRRN4CL +HGNC:19408 LRRTM1 leucine rich repeat transmembrane neuronal 1 protein-coding gene gene with protein product Approved 2p12 02p12 FLJ32082 2004-06-22 2014-11-18 347730 ENSG00000162951 OTTHUMG00000130021 uc061lcu.1 AY358310 NM_178839 CCDS1966 Q86UE6 12676565 MGI:2389173 RGD:1585921 LRRTM1 610867 +HGNC:19409 LRRTM2 leucine rich repeat transmembrane neuronal 2 protein-coding gene gene with protein product Approved 5q31 05q31 KIAA0416 2004-06-22 2014-11-19 26045 ENSG00000146006 OTTHUMG00000163535 uc011cyz.2 AB007876 NM_015564 CCDS47272 O43300 12676565 MGI:2389174 RGD:1593785 LRRTM2 610868 +HGNC:19410 LRRTM3 leucine rich repeat transmembrane neuronal 3 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 2004-02-04 2016-01-15 347731 ENSG00000198739 OTTHUMG00000018332 uc001jmz.2 BX640611 NM_178011 CCDS7270 Q86VH5 12676565 MGI:2389177 RGD:1304866 LRRTM3 610869 +HGNC:19411 LRRTM4 leucine rich repeat transmembrane neuronal 4 protein-coding gene gene with protein product Approved 2p12 02p12 FLJ12568 2004-06-22 2014-11-18 80059 ENSG00000176204 OTTHUMG00000152842 uc002snq.4 AK122612 NM_024993 "CCDS46346|CCDS46347|CCDS74530|CCDS82475" Q86VH4 12676565 MGI:2389180 RGD:1560707 LRRTM4 610870 +HGNC:25135 LRSAM1 leucine rich repeat and sterile alpha motif containing 1 protein-coding gene gene with protein product Approved 9q33.3-q34.11 09q33.3-q34.11 "FLJ31641|CMT2P" Sterile alpha motif domain containing 760 2003-12-19 2016-10-12 90678 ENSG00000148356 OTTHUMG00000020701 uc004brb.2 AK056203 NM_138361 "CCDS6873|CCDS55347" Q6UWE0 12975309 MGI:2684789 RGD:1564403 LRG_373|http://www.lrg-sequence.org/LRG/LRG_373 LRSAM1 610933 303011 6.3.2.- +HGNC:25023 LRTM1 leucine rich repeats and transmembrane domains 1 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 HT017 2006-01-02 2016-06-06 2016-06-06 57408 ENSG00000144771 OTTHUMG00000158578 uc003dhl.4 AF225421 NM_020678 "CCDS2876|CCDS77753" Q9HBL6 12477932 MGI:2442106 RGD:7612006 LRTM1 +HGNC:32443 LRTM2 leucine rich repeats and transmembrane domains 2 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 2006-01-05 2016-06-06 2016-06-06 654429 ENSG00000166159 OTTHUMG00000168088 uc001qju.2 AK095610 XM_017019848 CCDS31726 Q8N967 MGI:2141485 RGD:1587001 LRTM2 +HGNC:25033 LRTOMT leucine rich transmembrane and O-methyltransferase domain containing protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "COMT2|CFAP111" "LRRC51|DFNB63" "leucine rich repeat containing 51|deafness, autosomal recessive 63" 2005-05-26 2008-11-27 2013-08-19 2014-11-18 220074 ENSG00000184154 OTTHUMG00000154887 uc010rqw.3 NM_145309 "CCDS8208|CCDS44667|CCDS44668|CCDS55778|CCDS59227" "Q8WZ04|Q96E66" "18794526|18953341" MGI:1916608 RGD:1561509 LRTOMT 612414 169402 +HGNC:21769 LRWD1 leucine rich repeats and WD repeat domain containing 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "DKFZp434K1815|ORCA|CENP-33" "origin recognition complex associated|centromere protein 33" WD repeat domain containing 362 2007-10-17 2016-06-06 2016-06-06 222229 ENSG00000161036 OTTHUMG00000157718 uc003uzn.4 AL133057 NM_152892 CCDS34715 Q9UFC0 "20932478|20850016|20180869" MGI:1918985 RGD:1359442 LRWD1 615167 +HGNC:6705 LSAMP limbic system-associated membrane protein protein-coding gene gene with protein product Approved 3q13.31 03q13.31 "LAMP|IGLON3" IgLON family member 3 "I-set domain containing|IgLON cell adhesion molecules" "593|1052" 1998-06-16 2015-08-10 4045 ENSG00000185565 OTTHUMG00000159308 uc003ebs.4 U41901 NM_002338 CCDS2982 Q13449 9615236 MGI:1261760 RGD:71102 LSAMP 603241 +HGNC:40350 LSAMP-AS1 LSAMP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.31 03q13.31 LSAMP antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2016-08-22 101926903 ENSG00000240922 OTTHUMG00000159307 uc032ryf.2 NR_109998 +HGNC:25652 LSG1 large 60S subunit nuclear export GTPase 1 protein-coding gene gene with protein product Approved 3q29 03q29 FLJ11301 large subunit GTPase 1 homolog (S. cerevisiae) 2005-12-22 2013-08-21 2014-11-18 55341 ENSG00000041802 OTTHUMG00000156021 uc003fui.3 NM_018385 CCDS33922 Q9H089 11230166 MGI:107236 RGD:1309089 LSG1 610780 +HGNC:37824 LSINCT5 long stress-induced non-coding transcript 5 non-coding RNA RNA, long non-coding Approved 5p15.33 05p15.33 Long non-coding RNAs 788 2013-01-31 2014-05-20 101234261 ENSG00000281560 OTTHUMG00000189568 uc063cau.1 GU228577 "21532345|20214974|23359273" 615764 +HGNC:20472 LSM1 LSM1 homolog, mRNA degradation associated protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "CASM|YJL124C" cancer-associated Sm protein "LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae)|LSM1, U6 small nuclear RNA associated" 2003-02-17 2015-07-02 2016-10-05 27257 ENSG00000175324 OTTHUMG00000164051 uc003xkw.4 AF000177 NM_014462 CCDS6103 O15116 "12515382|11953827" MGI:1914457 RGD:1304967 LSM1 607281 +HGNC:49776 LSM1P1 LSM1 homolog, mRNA degradation associated pseudogene 1 pseudogene pseudogene Approved 9p22.2 09p22.2 LSM1, U6 small nuclear RNA associated pseudogene 1 2014-02-14 2015-07-02 2015-07-02 100820732 ENSG00000233551 NG_030485 PGOHUM00000235974 +HGNC:49777 LSM1P2 LSM1 homolog, mRNA degradation associated pseudogene 2 pseudogene pseudogene Approved 5q34 05q34 LSM1, U6 small nuclear RNA associated pseudogene 2 2014-02-14 2015-07-02 2015-07-02 106480288 ENSG00000271679 OTTHUMG00000184369 NG_044166 PGOHUM00000235446 +HGNC:13940 LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G7b|YBL026W" C6orf28 "chromosome 6 open reading frame 28|LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)" 2002-04-05 2003-02-21 2015-07-02 2016-10-05 57819 ENSG00000204392 OTTHUMG00000031121 uc011irr.3 AF182288 NM_021177 CCDS4722 Q9Y333 "10523320|8428774|12515382" MGI:90676 RGD:1598536 LSM2 607282 +HGNC:17874 LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "YLR438C|SMX4|USS2" LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) 2003-02-17 2015-07-02 2015-08-25 27258 ENSG00000170860 OTTHUMG00000129838 uc003byo.2 AF182289 NM_014463 CCDS2619 P62310 "10369684|10523320|12515382" MGI:1914928 RGD:1305971 LSM3 607283 +HGNC:44346 LSM3P1 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 1 pseudogene pseudogene Approved 17q21.32 17q21.32 "LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 1|LSM3 pseudogene 1|LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 1" 2012-08-15 2015-07-02 2015-07-02 100303748 NG_012904 PGOHUM00000237099 +HGNC:44347 LSM3P2 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 2 pseudogene pseudogene Approved 12q22 12q22 "LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 2|LSM3 pseudogene 2|LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 2" 2012-08-15 2015-07-02 2015-07-02 100303745 ENSG00000257847 OTTHUMG00000170226 NG_012901 PGOHUM00000239897 +HGNC:44348 LSM3P3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 3 pseudogene pseudogene Approved 2p11.2 02p11.2 "LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 3|LSM3 pseudogene 3|LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 3" 2012-08-15 2015-07-02 2015-07-02 647302 ENSG00000225787 OTTHUMG00000153212 NG_012903 PGOHUM00000240121 +HGNC:44349 LSM3P4 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 4 pseudogene pseudogene Approved 4q31.21 04q31.21 "LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 4|LSM3 pseudogene 4|LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 4" 2012-08-15 2015-07-02 2015-07-02 100130178 ENSG00000250835 OTTHUMG00000161338 NG_012902 PGOHUM00000246090 +HGNC:44350 LSM3P5 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 5 pseudogene pseudogene Approved 16q23.1 16q23.1 "LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 5|LSM3 pseudogene 5|LSM3 U6 small nuclear RNA and mRNA degradation associated pseudogene 5" 2012-08-15 2015-07-02 2015-07-02 100303743 ENSG00000260014 OTTHUMG00000176922 NG_012900 PGOHUM00000249176 +HGNC:17259 LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding gene gene with protein product Approved 19p13.1 19p13.1 YER112W LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae) 2003-02-17 2015-07-02 2015-08-25 25804 ENSG00000130520 OTTHUMG00000183357 uc002niq.4 AF117235 NM_012321 "CCDS12374|CCDS62601" Q9Y4Z0 "10369684|10523320|12515382" MGI:1354692 RGD:1306808 LSM4 607284 +HGNC:17162 LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding gene gene with protein product Approved 7p14.3 07p14.3 YER146W LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) 2003-02-17 2015-07-02 2015-08-25 23658 ENSG00000106355 OTTHUMG00000022913 uc003tct.3 AF182291 NM_001130710 "CCDS5438|CCDS47571" Q9Y4Y9 "10369684|10523320|12515382" MGI:1913623 RGD:1308655 LSM5 607285 +HGNC:17017 LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding gene gene with protein product Approved 4q31.22 04q31.22 YDR378C LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 2003-02-17 2015-07-02 2016-10-05 11157 ENSG00000164167 OTTHUMG00000161440 uc003ikq.5 AF182292 NM_007080 CCDS3767 P62312 "10369684|10523320|12515382" MGI:1925901 RGD:1561937 LSM6 607286 +HGNC:31738 LSM6P1 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 1 pseudogene pseudogene Approved 18q21.33 18q21.33 HsT818 LSM6P "LSM6 homolog, U6 small nuclear RNA associated pseudogene|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 1|LSM6 pseudogene 1" 2006-01-24 2010-02-25 2015-07-02 2015-07-02 100129011 NG_016615 PGOHUM00000234946 +HGNC:37811 LSM6P2 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 2 pseudogene pseudogene Approved 12q13.12 12q13.12 "LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene 2|LSM6 pseudogene 2" 2010-02-25 2015-07-02 2015-07-02 100462857 ENSG00000257730 OTTHUMG00000169654 NG_021717 PGOHUM00000239773 +HGNC:20470 LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding gene gene with protein product Approved 19p13.3 19p13.3 YNL147W LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) 2003-02-17 2015-07-02 2015-09-03 51690 ENSG00000130332 OTTHUMG00000180441 uc002lvp.5 AF182293 NM_016199 CCDS45907 Q9UK45 "10369684|10523320|12515382" MGI:1913344 RGD:1305354 LSM7 607287 +HGNC:20471 LSM8 LSM8 homolog, U6 small nuclear RNA associated protein-coding gene gene with protein product Approved 7q31.31 07q31.31 YJR022W "this gene was incorrectly assigned as NAA38, 'N(alpha)-acetyltransferase 38, NatC auxiliary subunit', see HGNC:28212 for the real NAA38|LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae)" 2003-02-17 2014-01-21 2015-07-02 2015-08-25 51691 ENSG00000128534 OTTHUMG00000156956 uc002giz.4 AF182294 NM_016200 CCDS5775 O95777 "10523320|19660095" MGI:1923772 RGD:1308442 607288 +HGNC:17562 LSM10 LSM10, U7 small nuclear RNA associated protein-coding gene gene with protein product Approved 1p34.3 01p34.3 MGC15749 2004-04-28 2014-11-19 84967 ENSG00000181817 OTTHUMG00000008140 uc001cao.1 AF394685 NM_032881 CCDS408 Q969L4 11574479 MGI:2151045 RGD:1584914 LSM10 +HGNC:30860 LSM11 LSM11, U7 small nuclear RNA associated protein-coding gene gene with protein product Approved 5q33.3 05q33.3 FLJ38273 LSM11 homolog, U7 small nuclear RNA associated (S. cerevisiae) 2004-04-26 2004-04-28 2014-11-19 134353 ENSG00000155858 OTTHUMG00000130255 uc003lxf.2 AK095592 NM_173491 CCDS4342 P83369 12975319 MGI:1919540 RGD:1565523 LSM11 +HGNC:26407 LSM12 LSM12 homolog protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ30656 LSM12 homolog (S. cerevisiae) 2006-01-12 2015-07-02 2015-07-02 124801 ENSG00000161654 OTTHUMG00000181804 uc002iev.3 BC044587 NM_152344 CCDS11475 Q3MHD2 15225602 MGI:1919592 RGD:1309441 LSM12 611793 +HGNC:32453 LSM12P1 LSM12 pseudogene 1 pseudogene pseudogene Approved 8p12 08p12 LSM12P "LSM12 homolog (S. cerevisiae) pseudogene|LSM12 homolog (S. cerevisiae) pseudogene 1" 2007-08-21 2010-02-25 2013-10-18 2014-11-19 653122 ENSG00000232024 OTTHUMG00000157150 NG_005566 +HGNC:24489 LSM14A LSM14A, mRNA processing body assembly factor protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "DKFZP434D1335|RAP55A|RAP55" RNA-associated protein 55 "C19orf13|FAM61A" "chromosome 19 open reading frame 13|family with sequence similarity 61, member A|LSM14 homolog A (SCD6, S. cerevisiae)" 2004-02-11 2006-01-24 2016-06-22 2016-10-05 26065 ENSG00000257103 OTTHUMG00000180491 uc002nva.5 AL834398 NM_015578 "CCDS12435|CCDS46040" Q8ND56 "15225602|22745163" MGI:1914320 RGD:1305695 LSM14A 610677 +HGNC:15887 LSM14B LSM family member 14B protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FT005|bA11M20.3|FLJ25473|LSM13|RAP55B" "C20orf40|FAM61B" "chromosome 20 open reading frame 40|family with sequence similarity 61, member B|LSM14 homolog B (SCD6, S. cerevisiae)|LSM14B, SCD6 homolog B (S. cerevisiae)" 2001-06-21 2006-01-24 2015-06-26 2015-06-26 149986 ENSG00000149657 OTTHUMG00000032901 uc010gjy.2 AF172328 NM_144703 CCDS46626 Q9BX40 15225602 MGI:3040677 RGD:1563798 LSM14B +HGNC:22036 LSMEM1 leucine rich single-pass membrane protein 1 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 FLJ39575 C7orf53 "chromosome 7 open reading frame 53|leucine-rich single-pass membrane protein 1" 2007-07-10 2013-03-08 2016-04-04 2016-04-04 286006 ENSG00000181016 OTTHUMG00000155190 uc003vgm.4 AK096894 NM_182597 CCDS5756 Q8N8F7 MGI:2685735 RGD:1587073 +HGNC:26781 LSMEM2 leucine rich single-pass membrane protein 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ38608 C3orf45 "chromosome 3 open reading frame 45|leucine-rich single-pass membrane protein 2" 2006-01-13 2013-03-08 2016-04-04 2016-04-04 132228 ENSG00000179564 OTTHUMG00000156938 uc003cyz.4 AK095927 NM_153215 CCDS2814 Q8N112 MGI:3612240 RGD:1589957 +HGNC:6707 LSP1 lymphocyte-specific protein 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 WP34 1991-08-08 2014-11-18 4046 ENSG00000130592 OTTHUMG00000012252 uc001luj.3 M33552 NM_002339 "CCDS31334|CCDS31335|CCDS58110" P33241 2174784 MGI:96832 RGD:1306133 LSP1 153432 +HGNC:39716 LSP1P1 lymphocyte-specific protein 1 pseudogene 1 pseudogene pseudogene Approved 13q12.13 13q12.13 2011-03-24 2015-04-10 100463528 ENSG00000269099 OTTHUMG00000186973 NG_023189 +HGNC:39717 LSP1P2 lymphocyte-specific protein 1 pseudogene 2 pseudogene pseudogene Approved 3p12.3 03p12.3 2011-03-24 2011-03-24 100873967 ENSG00000240665 OTTHUMG00000158854 NG_032351 PGOHUM00000238071 +HGNC:39718 LSP1P3 lymphocyte-specific protein 1 pseudogene 3 pseudogene pseudogene Approved 5p13.3 05p13.3 2011-03-24 2012-10-16 729862 ENSG00000162685 OTTHUMG00000161933 NR_033961 PGOHUM00000251363 +HGNC:29572 LSR lipolysis stimulated lipoprotein receptor protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "LISCH7|ILDR3" "lipolysis-stimulated remnant|immunoglobulin-like domain containing receptor 3" Immunoglobulin like domain containing 594 2005-12-09 2014-11-19 51599 ENSG00000105699 OTTHUMG00000183142 uc002nyl.4 AF130366 NM_015925 "CCDS12449|CCDS12450|CCDS12451|CCDS59376" Q86X29 10224102 MGI:1927471 RGD:69236 LSR 616582 +HGNC:6708 LSS lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase) protein-coding gene gene with protein product Approved 21q22.3 21q22.3 OSC 1998-05-07 2015-08-25 4047 ENSG00000160285 OTTHUMG00000090633 uc002zij.4 U22526 XM_011529564 "CCDS13733|CCDS46654|CCDS54489" P48449 "7639730|8655142" MGI:1336155 RGD:620955 LSS 600909 436871 objectId:2434 5.4.99.7 +HGNC:14189 LST1 leukocyte specific transcript 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "LST-1|B144|D6S49E" 2001-03-09 2002-08-09 2016-10-05 7940 ENSG00000204482 OTTHUMG00000031264 uc003nut.4 U00921 XM_006715206 "CCDS43450|CCDS4705|CCDS54984|CCDS54985|CCDS54986|CCDS54987" O00453 "8824804|9367684" MGI:1096324 RGD:620077 LST1 109170 +HGNC:6709 LTA lymphotoxin alpha protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "TNFSF1|LT" TNF superfamily member 1 TNFB lymphotoxin alpha (TNF superfamily, member 1) Tumor necrosis factor superfamily 781 1986-01-01 2013-05-22 2016-10-05 4049 ENSG00000226979 OTTHUMG00000031135 uc011ioe.3 X01393 XM_011514615 CCDS4701 P01374 "2995927|3001529" MGI:104797 RGD:3020 LTA 153440 +HGNC:6710 LTA4H leukotriene A4 hydrolase protein-coding gene gene with protein product Approved 12q22 12q22 1993-07-29 2005-10-06 4048 ENSG00000111144 OTTHUMG00000170355 uc001ten.3 BC032528 NM_000895 "CCDS9059|CCDS58266|CCDS58267" P09960 7628486 MGI:96836 RGD:1311333 LTA4H 151570 M01.004 objectId:1395 3.3.2.6 +HGNC:6711 LTB lymphotoxin beta protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "p33|TNFSF3" TNF superfamily member 3 TNFC Tumor necrosis factor superfamily 781 1995-11-22 2015-11-17 2016-10-05 4050 ENSG00000227507 OTTHUMG00000031136 uc011feg.3 L11015 NM_002341 "CCDS4703|CCDS4704" Q06643 "7916655|1714477" MGI:104796 RGD:9083628 LTB 600978 +HGNC:6713 LTB4R leukotriene B4 receptor protein-coding gene gene with protein product Approved 14q12 14q12 "BLTR|P2Y7|LTB4R1" "P2RY7|GPR16|CMKRL1" Leukotriene receptors 204 1998-09-25 2016-10-05 1241 ENSG00000213903 OTTHUMG00000029346 uc001wos.4 X98356 NM_181657 CCDS9626 Q15722 "8921391|8702478" MGI:1309472 RGD:620410 LTB4R 601531 objectId:267 +HGNC:19260 LTB4R2 leukotriene B4 receptor 2 protein-coding gene gene with protein product Approved 14q12 14q12 "BLTR2|BLT2|JULF2|NOP9" Leukotriene receptors 204 2002-09-19 2016-04-25 56413 ENSG00000213906 OTTHUMG00000186500 uc001wor.4 AB008193 NM_001164692 CCDS9625 Q9NPC1 "11006272|10934229" MGI:1888501 RGD:621029 LTB4R2 605773 objectId:268 +HGNC:6714 LTBP1 latent transforming growth factor beta binding protein 1 protein-coding gene gene with protein product Approved 2p22.3 02p22.3 TGF-beta1-BP-1 Latent transforming growth factor beta binding proteins 628 1993-09-20 2016-10-05 4052 ENSG00000049323 OTTHUMG00000152118 uc021vft.2 NM_206943 "CCDS33177|CCDS33178|CCDS54344|CCDS54345" Q14766 "2350783|11104663" MGI:109151 RGD:68379 LTBP1 150390 +HGNC:6715 LTBP2 latent transforming growth factor beta binding protein 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "LTBP3|C14orf141" chromosome 14 open reading frame 141 Latent transforming growth factor beta binding proteins 628 1995-05-11 2001-12-04 2014-11-19 4053 ENSG00000119681 OTTHUMG00000171476 uc001xqa.4 NM_000428 CCDS9831 Q14767 7798248 MGI:99502 RGD:68380 LTBP2 602091 189348 +HGNC:6716 LTBP3 latent transforming growth factor beta binding protein 3 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 LTBP2 Latent transforming growth factor beta binding proteins 628 1995-05-11 2016-10-05 4054 ENSG00000168056 OTTHUMG00000166575 uc001oej.4 AF135960 NM_021070 "CCDS8103|CCDS44647" Q9NS15 7719025 MGI:1101355 RGD:62057 LTBP3 602090 189127 +HGNC:6717 LTBP4 latent transforming growth factor beta binding protein 4 protein-coding gene gene with protein product Approved 19q13.1-q13.2 19q13.1-q13.2 "LTBP-4|LTBP-4L|FLJ46318|FLJ90018" Latent transforming growth factor beta binding proteins 628 1998-11-18 2014-11-18 8425 ENSG00000090006 OTTHUMG00000182635 uc032hxp.2 Y13622 NM_003573 "CCDS74368|CCDS74369|CCDS74370" Q8N2S1 "9660815|9271198" MGI:1321395 RGD:1307033 LTBP4 604710 225264 +HGNC:6718 LTBR lymphotoxin beta receptor protein-coding gene gene with protein product Approved 12p13 12p13 "TNFCR|TNFR-RP|TNFR2-RP|TNF-R-III|TNFRSF3" TNFR superfamily, member 3 D12S370 Tumor necrosis factor receptor superfamily 782 1996-03-12 2015-11-17 2015-11-17 4055 ENSG00000111321 OTTHUMG00000168356 uc001qny.3 L04270 NM_002342 "CCDS8544|CCDS59233" P36941 "8171323|8486360" MGI:104875 RGD:1309448 LTBR 600979 objectId:1872 +HGNC:6719 LTC4S leukotriene C4 synthase protein-coding gene gene with protein product Approved 5q35.3 05q35.3 MGC33147 1994-11-24 2016-10-05 4056 ENSG00000213316 OTTHUMG00000150314 uc003mko.4 U11552 NM_000897 CCDS34316 Q16873 8052639 MGI:107498 RGD:620677 LTC4S 246530 123313 objectId:1391 4.4.1.20 +HGNC:6720 LTF lactotransferrin protein-coding gene gene with protein product Approved 3p21.31 03p21.31 HLF2 Transferrins 908 2001-06-22 2015-09-03 4057 ENSG00000012223 OTTHUMG00000156325 uc003cpq.5 NM_002343 "CCDS33747|CCDS56251|CCDS82763" P02788 "17476971|3356163" MGI:96837 RGD:1305445 LTF 150210 +HGNC:6721 LTK leukocyte receptor tyrosine kinase protein-coding gene gene with protein product Approved 15q15.1 15q15.1 TYK1 leukocyte tyrosine kinase Receptor Tyrosine Kinases 321 1991-06-28 2008-01-23 2016-10-05 4058 ENSG00000062524 OTTHUMG00000130339 uc001zoa.4 D16105 XM_017022181 "CCDS10077|CCDS10078|CCDS45237" P29376 2320375 MGI:96840 RGD:1309323 LTK 151520 objectId:1838 2.7.10.1 +HGNC:13082 LTN1 listerin E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "KIAA0714|FLJ11053|LISTERIN" listerin "C21orf98|C21orf10|ZNF294|RNF160" "chromosome 21 open reading frame 98|zinc finger protein 294|ring finger protein 160" Ring finger proteins 58 2000-03-15 2010-09-17 2010-09-17 2016-04-25 26046 ENSG00000198862 OTTHUMG00000078803 uc061zjm.1 AK001915 NM_015565 CCDS33527 O94822 "20835226|19196968" MGI:1926163 RGD:1311238 LTN1 613083 +HGNC:21173 LTV1 LTV1 ribosome biogenesis factor protein-coding gene gene with protein product Approved 6q24.2 06q24.2 "FLJ14909|dJ468K18.4" C6orf93 "chromosome 6 open reading frame 93|LTV1 homolog (S. cerevisiae)" 2003-05-22 2006-02-06 2014-02-03 2014-11-19 84946 ENSG00000135521 OTTHUMG00000015733 uc003qjs.4 BC009855 NM_032860 CCDS5201 Q96GA3 MGI:2447810 RGD:1311264 LTV1 +HGNC:44049 LTV1P1 LTV1 ribosome biogenesis factor pseudogene 1 pseudogene pseudogene Approved 4q27 04q27 LTV1 homolog (S. cerevisiae) pseudogene 1 2012-05-30 2015-06-26 2015-06-26 100289220 ENSG00000250219 OTTHUMG00000161330 NG_022033 PGOHUM00000245680 +HGNC:51845 LUADT1 lung adenocarcinoma associated transcript 1 non-coding RNA RNA, long non-coding Approved 6q24.3 06q24.3 Long non-coding RNAs 788 2015-08-21 2015-08-21 106182249 ENSG00000196634 OTTHUMG00000015761 NR_132442 26291312 +HGNC:6723 LUC7L LUC7 like protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "LUC7B1|hLuc7B1|Luc7" "LUC7 (S. cerevisiae)-like|LUC7-like (S. cerevisiae)|LUC7-like" 2000-08-24 2016-03-21 2016-03-21 55692 ENSG00000007392 OTTHUMG00000060730 uc002cgc.2 AY005111 NM_201412 "CCDS10401|CCDS32348|CCDS81921" Q9NQ29 MGI:1914228 RGD:1307542 LUC7L 607782 +HGNC:21608 LUC7L2 LUC7 like 2, pre-mRNA splicing factor protein-coding gene gene with protein product Approved 7q34 07q34 "CGI-74|CGI-59|H_NH0792N18.3|FLJ10657|LUC7B2|hLuc7B2" CGI-74 protein LUC7-like 2 (S. cerevisiae) 2003-07-15 2016-06-13 2016-06-13 51631 ENSG00000146963 OTTHUMG00000185163 uc003vux.5 AF151832 NM_016019 "CCDS43656|CCDS59085|CCDS59510" Q9Y383 17656373 MGI:2183260 RGD:1308651 LUC7L2 613056 +HGNC:24309 LUC7L3 LUC7 like 3 pre-mRNA splicing factor protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "LUC7A|CROP|OA48-18|CREAP-1|FLJ11063|CRA|hLuc7A" "cisplatin resistance associated overexpressed protein|CRE-associated protein" "LUC7-like 3 (S. cerevisiae)|LUC7-like 3 pre-mRNA splicing factor" 2009-08-20 2016-03-30 2016-03-30 51747 ENSG00000108848 OTTHUMG00000162257 uc002iss.4 NM_016424 "CCDS11573|CCDS82158" O95232 "10631324|12565863|17726058" MGI:1914934 RGD:1307981 LUC7L3 609434 +HGNC:39790 LUC7L3P1 LUC7 like 3 pre-mRNA splicing factor pseudogene 1 pseudogene pseudogene Approved 13q21.33 13q21.33 LUC7-like 3 (S. cerevisiae) pseudogene 1 2011-03-29 2016-06-27 2016-06-27 100420198 NG_024867 +HGNC:48498 LUCAT1 lung cancer associated transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 5q14.3 05q14.3 SCAL1 smoke and cancer associated lncRNA 1 Long non-coding RNAs 788 2013-05-18 2014-07-18 100505994 ENSG00000248323 OTTHUMG00000162611 "BQ232757|AK091866|BF218178" NR_103548 23672216 +HGNC:6724 LUM lumican protein-coding gene gene with protein product Approved 12q21.33 12q21.33 SLRR2D lumican proteoglycan LDC Small leucine rich repeat proteoglycans 573 1994-12-19 2014-06-13 4060 ENSG00000139329 OTTHUMG00000170074 uc001tbm.4 BT006707 NM_002345 CCDS9038 P51884 7558030 MGI:109347 RGD:620984 LUM 600616 +HGNC:51199 LUNAR1 leukemia-associated non-coding IGF1R activator RNA 1 non-coding RNA RNA, long non-coding Approved 15q26.3 15q26.3 leukemia-induced noncoding activator RNA Long non-coding RNAs 788 2014-08-07 2014-08-07 104564224 NR_126487 25083870 +HGNC:32327 LURAP1 leucine rich adaptor protein 1 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "FLJ25163|LRAP35a" leucine repeat adaptor protein 35a C1orf190 chromosome 1 open reading frame 190 2005-10-11 2012-02-01 2012-02-01 2014-11-19 541468 ENSG00000171357 OTTHUMG00000007605 uc010oma.3 AK057892 NM_001013615 CCDS30703 Q96LR2 21048106 MGI:1915325 RGD:1566001 616129 +HGNC:31452 LURAP1L leucine rich adaptor protein 1 like protein-coding gene gene with protein product Approved 9p23 09p23 "MGC46502|FLJ38505|bA3L8.2" similar to DNA segment, Chr 4, Brigham & Womens Genetics 0951 expressed C9orf150 "chromosome 9 open reading frame 150|leucine rich adaptor protein 1-like" 2004-04-20 2012-02-01 2016-03-16 2016-10-05 286343 ENSG00000153714 OTTHUMG00000019557 uc003zkw.4 AK095824 NM_203403 CCDS6473 Q8IV03 12766061 MGI:106510 RGD:1308059 616130 +HGNC:49761 LURAP1L-AS1 LURAP1L antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p23 09p23 2014-02-14 2014-02-14 101929467 ENSG00000235448 OTTHUMG00000019558 BQ416907 NR_125775 +HGNC:14985 LUZP1 leucine zipper protein 1 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 LUZP 2001-03-27 2016-10-05 7798 ENSG00000169641 OTTHUMG00000003227 uc001bgm.2 BC051733 NM_033631 CCDS30628 Q86V48 8812416 MGI:107629 RGD:61839 LUZP1 601422 +HGNC:23206 LUZP2 leucine zipper protein 2 protein-coding gene gene with protein product Approved 11p14.3 11p14.3 2003-10-09 2014-11-19 338645 ENSG00000187398 OTTHUMG00000166109 uc001mqs.4 AL832641 NM_001009909 "CCDS31446|CCDS58128" Q86TE4 12856284 MGI:1889615 RGD:6496163 LUZP2 608178 +HGNC:24971 LUZP4 leucine zipper protein 4 protein-coding gene gene with protein product Approved Xq23 Xq23 "HOM-TES-85|CT-8|CT28" cancer/testis antigen 28 2004-09-01 2016-10-05 51213 ENSG00000102021 OTTHUMG00000022234 uc004eqa.4 AF124430 NM_016383 CCDS14567 Q9P127 "12032826|11051238" RGD:1584898 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=LUZP4 LUZP4 300616 +HGNC:44904 LUZP4P1 leucine zipper protein 4 pseudogene 1 pseudogene pseudogene Approved 10p12.31 10p12.31 2012-12-18 2012-12-18 101060111 ENSG00000232853 OTTHUMG00000017791 PGOHUM00000238692 +HGNC:33955 LUZP6 leucine zipper protein 6 protein-coding gene gene with protein product Approved 7q33 07q33 "MTPNUT|MPD6" myotrophin 3'UTR transcript 2008-02-14 2012-04-20 767558 ENSG00000267697 OTTHUMG00000180445 uc064iig.1 "AF130088|AY611627" NM_001128619 CCDS59509 Q538Z0 16982933 611050 +HGNC:26904 LVRN laeverin protein-coding gene gene with protein product Approved 5q23.1 05q23.1 "APQ|FLJ90650|AQPEP|TAQPEP" aminopeptidase Q Aminopeptidases 104 2015-02-05 2015-08-25 206338 ENSG00000172901 OTTHUMG00000128890 AK075131 NM_173800 CCDS4124 Q6Q4G3 17525158 MGI:1921824 RGD:1562779 610046 objectId:1562 +HGNC:13347 LXN latexin protein-coding gene gene with protein product Approved 3q25.32 03q25.32 2004-04-30 2015-08-25 56925 ENSG00000079257 OTTHUMG00000158807 uc003fch.3 AF087851 NM_020169 CCDS3183 Q9BS40 MGI:107633 RGD:68361 LXN 609305 I47.001 +HGNC:13348 LY6D lymphocyte antigen 6 complex, locus D protein-coding gene gene with protein product Approved 8q24.3 08q24.3 E48 LY6/PLAUR domain containing 1226 2004-01-22 2016-10-05 8581 ENSG00000167656 OTTHUMG00000164693 uc003yxf.2 U66837 NM_003695 CCDS6390 Q14210 "7790363|9551972" MGI:96881 RGD:1306132 LY6D 606204 +HGNC:6727 LY6E lymphocyte antigen 6 complex, locus E protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "TSA-1|RIG-E|SCA-2" retinoic acid induced gene E LY6/PLAUR domain containing 1226 1998-06-19 2015-07-22 4061 ENSG00000160932 OTTHUMG00000164754 uc064qwc.1 U42376 NM_001127213 CCDS6394 Q16553 "8757598|8650192" MGI:106651 RGD:1565342 LY6E 601384 +HGNC:13931 LY6G5B lymphocyte antigen 6 complex, locus G5B protein-coding gene gene with protein product Approved 6p21.33 06p21.33 G5b C6orf19 chromosome 6 open reading frame 19 LY6/PLAUR domain containing 1226 2002-04-05 2002-08-01 2002-07-29 2016-10-05 58496 ENSG00000240053 OTTHUMG00000031227 uc063yxf.1 AF129756 NM_021221 CCDS34400 Q8NDX9 "8812450|12079290|17008713" MGI:2385809 RGD:1303101 LY6G5B 610433 +HGNC:13932 LY6G5C lymphocyte antigen 6 complex, locus G5C protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G5c|NG33" C6orf20 chromosome 6 open reading frame 20 LY6/PLAUR domain containing 1226 2002-04-05 2002-08-01 2002-07-29 2016-10-05 80741 ENSG00000204428 OTTHUMG00000031228 uc011jlt.2 NM_025262 CCDS34401 Q5SRR4 12079290 MGI:2148974 RGD:735180 LY6G5C 610434 +HGNC:13936 LY6G6C lymphocyte antigen 6 complex, locus G6C protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G6c|NG24" C6orf24 chromosome 6 open reading frame 24 LY6/PLAUR domain containing 1226 2002-04-05 2002-08-01 2002-07-29 2016-10-05 80740 ENSG00000204421 OTTHUMG00000031251 uc003nwh.4 NM_025261 CCDS4714 O95867 "10384126|12079290" MGI:2148930 RGD:1302999 LY6G6C 610435 +HGNC:13935 LY6G6D lymphocyte antigen 6 complex, locus G6D protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "MEGT1|Ly6-D|G6D|LY6-D|NG25" C6orf23 chromosome 6 open reading frame 23 LY6/PLAUR domain containing 1226 2002-04-05 2002-08-01 2002-07-29 2016-10-05 58530 ENSG00000244355 OTTHUMG00000137370 uc011iqp.2 NM_021246 CCDS34404 O95868 12079290 MGI:2148931 RGD:1303064 LY6G6D 606038 +HGNC:13934 LY6G6E lymphocyte antigen 6 complex, locus G6E other unknown Approved 6p21.33 06p21.33 G6e C6orf22 "chromosome 6 open reading frame 22|lymphocyte antigen 6 complex, locus G6E (pseudogene)" LY6/PLAUR domain containing 1226 2002-04-05 2002-08-01 2016-07-19 2016-10-05 79136 ENSG00000255552 OTTHUMG00000166419 uc063yxz.1 NR_024541 12079290 MGI:1917524 RGD:1303112 LY6G6E 610437 +HGNC:13933 LY6G6F lymphocyte antigen 6 complex, locus G6F protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G6f|NG32" "LY6G6D|C6orf21" chromosome 6 open reading frame 21 "V-set domain containing|LY6/PLAUR domain containing" "590|1226" 2002-08-05 2008-05-21 2008-05-21 2015-07-22 259215 ENSG00000204424 OTTHUMG00000031252 uc003nwa.2 NM_001003693 CCDS34403 Q5SQ64 12852788 MGI:3616082 RGD:1303333 LY6G6F 611404 +HGNC:6728 LY6H lymphocyte antigen 6 complex, locus H protein-coding gene gene with protein product Approved 8q24.3 08q24.3 NMLY6 LY6/PLAUR domain containing 1226 1998-06-19 2015-09-03 4062 ENSG00000176956 OTTHUMG00000154890 uc064qww.1 AB012293 XM_017013413 "CCDS6396|CCDS47926" O94772 9799603 MGI:1346030 RGD:1311896 LY6H 603625 +HGNC:24225 LY6K lymphocyte antigen 6 complex, locus K protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "HSJ001348|FLJ35226|CT97" cancer/testis antigen 97 LY6/PLAUR domain containing 1226 2004-11-11 2016-04-25 54742 ENSG00000160886 OTTHUMG00000164720 uc011ljv.3 AK092545 NM_017527 "CCDS59114|CCDS6385" Q17RY6 12516096 MGI:1923736 RGD:2322953 LY6K 615093 +HGNC:52284 LY6L lymphocyte antigen 6 complex, locus L protein-coding gene gene with protein product Approved 8q24.3 08q24.3 LY6/PLAUR domain containing 1226 2016-03-29 2016-03-29 101928108 ENSG00000261667 OTTHUMG00000173037 XM_017014130 MGI:5313101 RGD:1597652 +HGNC:6730 LY9 lymphocyte antigen 9 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "CD229|mLY9|SLAMF3|hly9" "CD molecules|Immunoglobulin like domain containing" "471|594" 1998-06-05 2014-11-18 4063 ENSG00000122224 OTTHUMG00000024007 uc001fwu.5 L42621 NM_002348 "CCDS30916|CCDS30917|CCDS65695|CCDS65696" Q9HBG7 "8537117|7797269" MGI:96885 RGD:1308341 LY9 600684 CD229 +HGNC:6729 LY75 lymphocyte antigen 75 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "DEC-205|CLEC13B|CD205" "CD molecules|C-type lectin domain family|Minor histocompatibility antigens|Scavenger receptors" "471|494|870|1253" 1997-12-17 2016-10-05 4065 ENSG00000054219 OTTHUMG00000132025 uc002ubc.6 AF011333 NM_002349 CCDS2211 O60449 9553150 MGI:106662 RGD:1565962 LY75 604524 CD205 +HGNC:38828 LY75-CD302 LY75-CD302 readthrough other readthrough Approved 2q24.2 02q24.2 2011-04-19 2014-11-19 100526664 ENSG00000248672 OTTHUMG00000161661 uc002ubb.5 NM_001198759 "CCDS56140|CCDS56141" +HGNC:16837 LY86 lymphocyte antigen 86 protein-coding gene gene with protein product Approved 6p25.1 06p25.1 "MD-1|dJ80N2.1" 2003-02-19 2016-10-05 9450 ENSG00000112799 OTTHUMG00000014190 uc063lqc.1 AF057178 XM_017011505 CCDS4498 O95711 9763566 MGI:1321404 RGD:1309936 LY86 605241 +HGNC:26593 LY86-AS1 LY86 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p25.1 06p25.1 FLJ33708 "LY86AS|LY86-AS" "LY86 antisense RNA (non-protein coding)|LY86 antisense RNA 1 (non-protein coding)" 2010-07-08 2010-11-25 2012-08-15 2014-11-19 285780 ENSG00000216863 OTTHUMG00000014192 uc003mww.5 AK091027 NR_026970 +HGNC:17156 LY96 lymphocyte antigen 96 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 MD-2 2003-02-19 2016-10-05 23643 ENSG00000154589 OTTHUMG00000164504 uc003yad.4 AB018549 NM_015364 "CCDS6216|CCDS56540" Q9Y6Y9 "10359581|11466383" MGI:1341909 RGD:1302993 LY96 605243 objectId:2890 +HGNC:26021 LYAR Ly1 antibody reactive protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "ZC2HC2|ZLYAR" Ly1 antibody reactive homolog (mouse) "Zinc fingers|Zinc fingers C2HC-type" "26|66" 2007-06-04 2012-12-07 2014-11-18 55646 ENSG00000145220 OTTHUMG00000125477 uc003ght.4 AL136750 NM_017816 CCDS3374 Q9NX58 "11230166|8491376" MGI:107470 RGD:1305352 LYAR +HGNC:50747 LYARP1 Ly1 antibody reactive pseudogene 1 pseudogene pseudogene Approved 2p12 02p12 2014-06-13 2014-06-13 100420968 ENSG00000229560 OTTHUMG00000152954 NG_023577 PGOHUM00000240114 +HGNC:27014 LYG1 lysozyme g1 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 SALW1939 lysozyme G-like 1 Lysozymes, g-type 1173 2007-06-28 2016-01-12 2016-01-12 129530 ENSG00000144214 OTTHUMG00000130639 uc010yvo.3 BC029126 NM_174898 CCDS2043 Q8N1E2 12574869 MGI:1916791 RGD:1560332 LYG1 +HGNC:29615 LYG2 lysozyme g2 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 LYGH lysozyme G-like 2 Lysozymes, g-type 1173 2007-06-28 2016-01-12 2016-01-12 254773 ENSG00000185674 OTTHUMG00000130643 uc002szw.2 AF323919 NM_175735 CCDS2042 Q86SG7 "8889548|12574869" MGI:2685622 RGD:6496811 LYG2 616547 +HGNC:6734 LYL1 LYL1, basic helix-loop-helix family member protein-coding gene gene with protein product Approved 19p13.13 19p13.13 bHLHa18 "lymphoblastic leukemia derived sequence 1|lymphoblastic leukemia associated hematopoiesis regulator 1" Basic helix-loop-helix proteins 420 1990-03-21 2016-06-22 2016-06-22 4066 ENSG00000104903 OTTHUMG00000180736 uc002mwi.4 NM_005583 CCDS12292 P12980 2752424 MGI:96891 RGD:1359244 LYL1 151440 +HGNC:6735 LYN LYN proto-oncogene, Src family tyrosine kinase protein-coding gene gene with protein product Approved 8q12.1 08q12.1 JTK8 v-yes-1 Yamaguchi sarcoma viral related oncogene homolog SH2 domain containing 741 1986-01-01 2014-06-25 2016-10-05 4067 ENSG00000254087 OTTHUMG00000044345 uc003xsk.5 M16038 NM_002350 "CCDS6162|CCDS47859" P07948 3561390 MGI:96892 RGD:621017 LYN 165120 objectId:2060 +HGNC:29604 LYNX1 Ly6/neurotoxin 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 SLURP2 LY6/PLAUR domain containing 1226 2004-11-03 2014-11-19 66004 ENSG00000180155 OTTHUMG00000164694 uc033cbo.2 AF321824 NM_177476 "CCDS6389|CCDS34951|CCDS34952" Q9BZG9 "12573258|10402197" MGI:1345180 RGD:1312017 LYNX1 606110 +HGNC:28431 LYPD1 LY6/PLAUR domain containing 1 protein-coding gene gene with protein product Approved 2q21.2 02q21.2 MGC29643 LYPDC1 LY6/PLAUR domain containing 1226 2004-11-16 2005-08-30 2014-11-19 116372 ENSG00000150551 OTTHUMG00000153609 uc002ttn.4 AK075487 NM_144586 "CCDS42759|CCDS46416" Q8N2G4 12477932 MGI:1919835 RGD:1549754 LYPD1 610450 +HGNC:25215 LYPD2 LY6/PLAUR domain containing 2 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "RGTR430|UNQ430" LYPDC2 LY6/PLAUR domain containing 1226 2004-11-16 2005-08-30 2014-11-19 137797 ENSG00000197353 OTTHUMG00000164686 uc003ywz.4 AY358432 NM_205545 CCDS6388 Q6UXB3 12975309 MGI:1915561 RGD:1307892 LYPD2 +HGNC:24880 LYPD3 LY6/PLAUR domain containing 3 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 C4.4A LY6/PLAUR domain containing 1226 2005-08-30 2015-07-22 27076 ENSG00000124466 OTTHUMG00000182696 uc002owl.2 AF082889 NM_014400 CCDS12620 O95274 "11179665|11245483" MGI:1919684 RGD:69053 LYPD3 609484 +HGNC:28659 LYPD4 LY6/PLAUR domain containing 4 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 MGC42718 LY6/PLAUR domain containing 1226 2005-08-30 2015-07-22 147719 ENSG00000273111 OTTHUMG00000182674 uc032hyg.2 AY358726 NM_173506 "CCDS12587|CCDS77303" Q6UWN0 12975309 MGI:2687054 RGD:1583497 LYPD4 +HGNC:26397 LYPD5 LY6/PLAUR domain containing 5 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 FLJ30469 LY6/PLAUR domain containing 1226 2005-08-30 2015-07-22 284348 ENSG00000159871 OTTHUMG00000182781 uc002oxn.5 AK055031 NM_182573 "CCDS12631|CCDS46096" Q6UWN5 12477932 MGI:1924192 RGD:1560355 LYPD5 +HGNC:28751 LYPD6 LY6/PLAUR domain containing 6 protein-coding gene gene with protein product Approved 2q23.2 02q23.2 MGC52057 LY6/PLAUR domain containing 1226 2006-07-17 2014-11-19 130574 ENSG00000187123 OTTHUMG00000131852 uc021vqt.2 BC047013 NM_194317 CCDS2188 Q86Y78 12477932 MGI:2443848 RGD:1587119 LYPD6 613359 +HGNC:27018 LYPD6B LY6/PLAUR domain containing 6B protein-coding gene gene with protein product Approved 2q23.2 02q23.2 "CT116|LYPD7" cancer/testis antigen 116 LY6/PLAUR domain containing 1226 2008-07-25 2015-08-25 130576 ENSG00000150556 OTTHUMG00000153743 uc002twv.2 NM_177964 "CCDS46423|CCDS82519" Q8NI32 18360792 MGI:1919147 RGD:1562767 LYPD6B +HGNC:44208 LYPD8 LY6/PLAUR domain containing 8 protein-coding gene gene with protein product Approved 1q44 01q44 LY6/PLAUR domain containing 1226 2012-07-20 2015-07-31 646627 ENSG00000259823 OTTHUMG00000174833 uc031vuv.2 NM_001085474 CCDS73059 Q6UX82 MGI:1917413 RGD:1586251 617067 +HGNC:6737 LYPLA1 lysophospholipase I protein-coding gene gene with protein product Approved 8q11.23 08q11.23 LPL1 acyl-protein thioesterase 1 1999-09-29 2016-07-01 10434 ENSG00000120992 OTTHUMG00000164313 uc003xry.4 AF081281 XM_017012956 "CCDS6157|CCDS64899|CCDS75738|CCDS75739" O75608 10064899 MGI:1344588 RGD:3025 LYPLA1 605599 3.1.1.5 +HGNC:44005 LYPLA1P1 lysophospholipase I pseudogene 1 pseudogene pseudogene Approved 7q31.32 07q31.32 2012-05-28 2014-11-19 100129401 ENSG00000223595 OTTHUMG00000157088 NG_022546 PGOHUM00000232979 +HGNC:44006 LYPLA1P2 lysophospholipase I pseudogene 2 pseudogene pseudogene Approved 4q25 04q25 2012-05-28 2014-11-19 391686 ENSG00000251483 OTTHUMG00000161117 NG_022025 PGOHUM00000258174 +HGNC:44007 LYPLA1P3 lysophospholipase I pseudogene 3 pseudogene pseudogene Approved 6q13 06q13 2012-05-28 2014-11-19 157713 ENSG00000218350 OTTHUMG00000014999 NG_001063 PGOHUM00000258219 +HGNC:6738 LYPLA2 lysophospholipase II protein-coding gene gene with protein product Approved 1p36.11 01p36.11 APT-2 1999-09-29 2014-11-19 11313 ENSG00000011009 OTTHUMG00000002961 uc001bht.4 AF098668 XM_005245728 CCDS241 O95372 MGI:1347000 RGD:620210 LYPLA2 616143 S09.025 3.1.1.5 +HGNC:21069 LYPLA2P1 lysophospholipase II pseudogene 1 pseudogene pseudogene Approved 6p21.32 06p21.32 "dJ570F3.6|APT" LYPLA2L lysophospholipase 2 like 2003-05-23 2004-03-26 2014-11-19 653639 ENSG00000228285 OTTHUMG00000031128 NR_001444 PGOHUM00000243156 +HGNC:50445 LYPLA2P2 lysophospholipase II pseudogene 2 pseudogene pseudogene Approved 19p13.2 19p13.2 2014-04-29 2014-04-29 388499 ENSG00000269153 OTTHUMG00000182507 NR_033250 PGOHUM00000234126 +HGNC:50446 LYPLA2P3 lysophospholipase II pseudogene 3 pseudogene pseudogene Approved 9q21.2 09q21.2 2014-04-29 2014-04-29 100128790 ENSG00000236604 OTTHUMG00000020049 NG_021664 PGOHUM00000263239 +HGNC:20440 LYPLAL1 lysophospholipase like 1 protein-coding gene gene with protein product Approved 1q41 01q41 Q96AV0 lysophospholipase-like 1 2003-02-07 2016-01-21 2016-01-21 127018 ENSG00000143353 OTTHUMG00000037141 uc001hlq.5 BC016711 NM_138794 "CCDS1522|CCDS73032" Q5VWZ2 MGI:2385115 RGD:1311195 LYPLAL1 616548 +HGNC:50560 LYPLAL1-AS1 LYPLAL1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 1q41 01q41 2014-05-21 2014-05-21 643723 ENSG00000228063 OTTHUMG00000041228 NR_038845 +HGNC:25074 LYRM1 LYR motif containing 1 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 A211C6.1 LYR motif containing 635 2006-08-15 2016-10-05 57149 ENSG00000102897 OTTHUMG00000131554 uc010bwj.5 NM_020424 CCDS10593 O43325 10493829 MGI:1921169 RGD:1563498 LYRM1 614709 +HGNC:25229 LYRM2 LYR motif containing 2 protein-coding gene gene with protein product Approved 6q15 06q15 DJ122O8.2 LYR motif containing 635 2006-08-15 2014-11-19 57226 ENSG00000083099 OTTHUMG00000015203 uc003pnm.4 BC009782 NM_020466 CCDS5023 Q9NU23 12477932 MGI:1917573 RGD:1597334 LYRM2 +HGNC:21365 LYRM4 LYR motif containing 4 protein-coding gene gene with protein product Approved 6p25.1 06p25.1 "CGI-203|ISD11" C6orf149 chromosome 6 open reading frame 149 LYR motif containing 635 2003-06-10 2006-09-19 2006-09-19 2016-10-03 57128 ENSG00000214113 OTTHUMG00000014173 uc003mwp.5 AF258559 NM_020408 "CCDS4493|CCDS54961|CCDS54962|CCDS83061" Q9HD34 23814038 MGI:2683538 RGD:7672286 LYRM4 613311 400605 +HGNC:52055 LYRM4-AS1 LYRM4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p25.1 06p25.1 2015-10-15 2015-10-15 100129461 NR_126015 +HGNC:28072 LYRM7 LYR motif containing 7 protein-coding gene gene with protein product Approved 5q23.3-q31.1 05q23.3-q31.1 "FLJ20796|MZM1L" C5orf31 "chromosome 5 open reading frame 31|Lyrm7 homolog (mouse)" LYR motif containing 635 2006-08-15 2006-10-17 2012-10-23 2016-10-11 90624 ENSG00000186687 OTTHUMG00000128994 uc003kvg.2 BC047079 NM_181705 "CCDS4148|CCDS78057" Q5U5X0 23168492 MGI:1922780 RGD:1596391 LYRM7 615831 377496 +HGNC:27314 LYRM9 LYR motif containing 9 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 HSD24 C17orf108 chromosome 17 open reading frame 108 LYR motif containing 635 2009-09-30 2012-10-23 2012-10-23 2015-08-25 201229 ENSG00000232859 OTTHUMG00000132829 uc002gzx.4 BC018092 NM_001076680 CCDS45631 A8MSI8 12477932 MGI:1913524 RGD:1562012 +HGNC:32070 LYSMD1 LysM domain containing 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "SB145|MGC35223|RP11-68I18.5" LysM, putative peptidoglycan-binding, domain containing 1 2005-07-15 2016-01-22 2016-10-05 388695 ENSG00000163155 OTTHUMG00000012260 uc001ewy.4 BX647911 NM_212551 "CCDS986|CCDS44218" Q96S90 12477932 MGI:1919409 RGD:1561865 LYSMD1 +HGNC:28571 LYSMD2 LysM domain containing 2 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 MGC35274 LysM, putative peptidoglycan-binding, domain containing 2 2005-07-15 2016-01-22 2016-01-22 256586 ENSG00000140280 OTTHUMG00000131804 uc002abi.4 AY125955 NM_153374 "CCDS10143|CCDS45259" Q8IV50 12477932 MGI:1917332 RGD:1304585 LYSMD2 +HGNC:26969 LYSMD3 LysM domain containing 3 protein-coding gene gene with protein product Approved 5q14.3 05q14.3 FLJ13542 LysM, putative peptidoglycan-binding, domain containing 3 2005-07-15 2016-01-22 2016-01-22 116068 ENSG00000176018 OTTHUMG00000162667 uc003kjr.5 BX537972 XM_371760 "CCDS43338|CCDS68911" Q7Z3D4 MGI:1915906 RGD:1308805 LYSMD3 +HGNC:26571 LYSMD4 LysM domain containing 4 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 FLJ33008 LysM, putative peptidoglycan-binding, domain containing 4 2005-10-24 2016-01-22 2016-01-22 145748 ENSG00000183060 OTTHUMG00000149853 uc002bvl.5 BC041097 NM_152449 "CCDS10381|CCDS66876|CCDS66877|CCDS73788" Q5XG99 12477932 MGI:1922349 RGD:1592887 LYSMD4 +HGNC:1968 LYST lysosomal trafficking regulator protein-coding gene gene with protein product Approved 1q42.3 01q42.3 CHS CHS1 Chediak-Higashi syndrome 1 "WD repeat domain containing|BEACH domain containing " "362|1230" 1996-10-31 2004-12-10 2004-12-09 2016-10-12 1130 ENSG00000143669 OTTHUMG00000040527 uc001hxj.4 U70064 XM_011544033 CCDS31062 Q99698 "8717042|8896560" MGI:107448 RGD:621837 "Albinism Database|http://albinismdb.med.umn.edu/|LYSTbase: Mutation registry for Chediak-Higashi syndrome (previously known as CHS1base)|http://structure.bmc.lu.se/idbase/LYSTbase/|Mutations of the Chediak Higashi Syndrome|http://www.retina-international.org/files/sci-news/chsmut.htm|LRG_143|http://www.lrg-sequence.org/LRG/LRG_143" LYST 606897 123318 +HGNC:41320 LYST-AS1 LYST antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q42.3 01q42.3 LYST-IT2 LYST intronic transcript 2 (non-protein coding) 2011-06-03 2012-11-21 2012-11-21 2014-11-18 100874266 ENSG00000229463 OTTHUMG00000041434 uc057qor.1 +HGNC:41319 LYST-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:13349 LYST2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:14687 LYVE1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 LYVE-1 XLKD1 extracellular link domain containing 1 2001-03-21 2007-06-26 2007-06-26 2015-07-22 10894 ENSG00000133800 OTTHUMG00000165713 uc001miv.3 AF118108 NM_016164 CCDS7804 Q9Y5Y7 "10037799|12554094" MGI:2136348 RGD:1310864 LYVE1 605702 +HGNC:6740 LYZ lysozyme protein-coding gene gene with protein product Approved 12q15 12q15 renal amyloidosis lysozyme (renal amyloidosis) Lysozymes, c-type 1174 1989-05-25 2010-04-29 2016-10-12 4069 ENSG00000090382 OTTHUMG00000169342 uc001suw.3 X14008 NM_000239 CCDS8989 P61626 "8464497|2546758" "MGI:96902|MGI:96897|MGI:1924647" RGD:3026 LRG_768|http://www.lrg-sequence.org/LRG/LRG_768 LYZ 153450 123322 3.2.1.17 +HGNC:30502 LYZL1 lysozyme like 1 protein-coding gene gene with protein product Approved 10p12.1-p11.23 10p12.1-p11.23 "MGC33408|LYC2" lysozyme-like 1 Lysozymes, c-type 1174 2004-05-27 2015-12-18 2016-10-11 84569 ENSG00000120563 OTTHUMG00000017880 uc001iul.4 NM_032517 CCDS31174 Q6UWQ5 12477932 MGI:1914578 RGD:1559869 LYZL1 3.2.1.1 +HGNC:29613 LYZL2 lysozyme like 2 protein-coding gene gene with protein product Approved 10p11.23 10p11.23 lysozyme-like 2 Lysozymes, c-type 1174 2004-05-27 2015-12-18 2015-12-18 119180 ENSG00000151033 OTTHUMG00000017898 uc001ivk.4 AF139543 NM_183058 CCDS7167 Q7Z4W2 MGI:1914578 LYZL2 612748 +HGNC:28387 LYZL4 lysozyme like 4 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "MGC26768|LYC4" lysozyme-like 4 Lysozymes, c-type 1174 2004-08-02 2015-12-18 2016-10-05 131375 ENSG00000157093 OTTHUMG00000131793 uc003cle.4 "BC016747|AF326749" NM_144634 CCDS2697 Q96KX0 16014814 MGI:1916282 RGD:1308401 LYZL4 612750 +HGNC:29614 LYZL6 lysozyme like 6 protein-coding gene gene with protein product Approved 17q12 17q12 "LYC1|PRO1485|TKAL754" lysozyme-like 6 Lysozymes, c-type 1174 2004-08-02 2015-12-18 2015-12-18 57151 ENSG00000275722 OTTHUMG00000188400 uc060ees.1 "AF088219|AY742214" NM_020426 CCDS11302 O75951 10213461 MGI:1916694 RGD:1306968 LYZL6 612751 +HGNC:17497 LZIC leucine zipper and CTNNBIP1 domain containing protein-coding gene gene with protein product Approved 1p36.22 01p36.22 MGC15436 2002-03-06 2014-11-18 84328 ENSG00000162441 OTTHUMG00000001804 uc001aqo.4 AB060688 NM_032368 CCDS107 Q8WZA0 11712074 MGI:1916401 RGD:1309253 LZIC 610458 +HGNC:6741 LZTFL1 leucine zipper transcription factor like 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 BBS17 leucine zipper transcription factor-like 1 Bardet-Biedl syndrome associated 980 2000-06-16 2015-11-13 2016-10-05 54585 ENSG00000163818 OTTHUMG00000133452 uc003cox.3 AJ297351 NM_020347 "CCDS2731|CCDS63608|CCDS63609" Q9NQ48 "11352561|22510444" MGI:1934860 RGD:1306628 LZTFL1 606568 303711 +HGNC:6742 LZTR1 leucine zipper like transcription regulator 1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "LZTR-1|BTBD29" leucine-zipper-like transcriptional regulator 1 BTB domain containing 861 1999-10-19 2016-07-04 2016-10-12 8216 ENSG00000099949 OTTHUMG00000150878 uc002zto.4 D38496 NM_006767 CCDS33606 Q8N653 "7633402|16356934" MGI:1914113 RGD:1309100 LRG_989|http://www.lrg-sequence.org/LRG/LRG_989 LZTR1 600574 369810 +HGNC:13861 LZTS1 leucine zipper tumor suppressor 1 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 FEZ1 F37/Esophageal cancer-related gene-coding leucine-zipper motif leucine zipper, putative tumor suppressor 1 Leucine zipper tumor suppressor family 1314 2001-02-27 2016-07-08 2016-10-05 11178 ENSG00000061337 OTTHUMG00000097027 uc064kuf.1 AF123659 NM_021020 CCDS6015 Q9Y250 "10097140|17349584" MGI:2684762 RGD:708565 LZTS1 606551 +HGNC:43630 LZTS1-AS1 LZTS1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8p21.3 08p21.3 LZTS1 antisense RNA 1 (non-protein coding) 2011-12-06 2012-08-15 2012-10-12 100874051 ENSG00000253733 OTTHUMG00000163745 uc022aso.2 NR_047509 +HGNC:29381 LZTS2 leucine zipper tumor suppressor 2 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "KIAA1813|LAPSER1" leucine zipper, putative tumor suppressor 2 Leucine zipper tumor suppressor family 1314 2004-03-18 2016-07-08 2016-10-05 84445 ENSG00000107816 OTTHUMG00000018914 uc001ksj.4 AB058716 XM_046743 CCDS7507 Q9BRK4 "11347906|11709705|18490357" MGI:2385095 RGD:1359249 LZTS2 610454 +HGNC:30139 LZTS3 leucine zipper tumor suppressor family member 3 protein-coding gene gene with protein product Approved 20p13 20p13 "ProSAPiP1|KIAA0552" ProSAP/Shank-interacting protein 1 Leucine zipper tumor suppressor family 1314 2016-07-08 2016-07-08 2016-07-08 9762 ENSG00000088899 OTTHUMG00000031735 NM_014731 CCDS63218 "16012743|16522626" MGI:2656976 RGD:631327 610484 +HGNC:25183 M1AP meiosis 1 associated protein protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "D6Mm5e|SPATA37" "meiosis 1 arresting protein|spermatogenesis associated 37" C2orf65 chromosome 2 open reading frame 65 2007-12-07 2013-01-16 2013-02-05 2014-11-19 130951 ENSG00000159374 OTTHUMG00000152918 uc002smy.3 NM_138804 "CCDS33229|CCDS62941" Q8TC57 "16881047|23269666" MGI:1315200 RGD:1563842 +HGNC:6751 M6P2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:6752 M6PR mannose-6-phosphate receptor, cation dependent protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CD-MPR|CD-M6PR" mannose-6-phosphate receptor (cation dependent) MRH domain containing 1233 1989-06-30 2016-03-10 2016-03-10 4074 ENSG00000003056 OTTHUMG00000168276 uc001qvf.4 XM_005253376 "CCDS8598|CCDS73440" P20645 MGI:96904 RGD:1359355 M6PR 154540 +HGNC:6744 M130 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:6747 M195 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:6755 MAA microphthalmia or anophthalmia and associated anomalies phenotype phenotype only Approved X X 2001-06-22 2014-02-03 4080 +HGNC:24010 MAATS1 MYCBP associated and testis expressed 1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "AAT1|AAT1alpha|SPATA26|CaM-IP2" "AMY-1-associating protein expressed in testis 1|MYCBP-binding protein|spermatogenesis associated 26" C3orf15 "chromosome 3 open reading frame 15|MYCBP/AMY-1-associated, testis expressed 1|MYCBP-associated, testis expressed 1" 2004-07-26 2012-09-26 2016-04-04 2016-04-04 89876 ENSG00000183833 OTTHUMG00000159422 uc003ede.4 AB063296 NM_033364 CCDS2994 Q7Z4T9 "12223483|14551891|17967944" MGI:2443598 RGD:1305539 MAATS1 609910 +HGNC:6757 MAB21L1 mab-21 like 1 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 CAGR1 "mab-21 (C. elegans)-like 1|mab-21-like 1 (C. elegans)" 1996-08-16 2016-04-06 2016-04-06 4081 ENSG00000180660 OTTHUMG00000016723 uc032aca.2 BC028170 NM_005584 CCDS9353 Q13394 8733127 MGI:1333773 RGD:1589984 MAB21L1 601280 +HGNC:6758 MAB21L2 mab-21 like 2 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "mab-21 (C. elegans)-like 2|mab-21-like 2 (C. elegans)" 1999-07-06 2016-04-06 2016-04-06 10586 ENSG00000181541 OTTHUMG00000161442 uc003ilw.4 AF155219 NM_006439 CCDS3774 Q9Y586 MGI:1346022 RGD:1595520 MAB21L2 604357 440122 +HGNC:26787 MAB21L3 mab-21 like 3 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 FLJ38716 C1orf161 "chromosome 1 open reading frame 161|mab-21-like 3 (C. elegans)" 2005-07-15 2011-02-23 2016-04-06 2016-04-06 126868 ENSG00000173212 OTTHUMG00000012110 uc001egc.1 AK096035 NM_152367 CCDS886 Q8N8X9 14702039 MGI:2446273 RGD:1308694 MAB21L3 +HGNC:30215 MACC1 MACC1, MET transcriptional regulator protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "7A5|SH3BP4L" metastasis associated in colon cancer 1 2008-10-14 2016-07-26 2016-10-05 346389 ENSG00000183742 OTTHUMG00000128415 uc003sus.5 NM_182762 CCDS5369 Q6ZN28 25738887 MGI:2685113 RGD:1309838 MACC1 612646 +HGNC:41257 MACC1-AS1 MACC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p21.1 07p21.1 MACC1 antisense RNA 1 (non-protein coding) 2012-02-23 2012-08-15 2014-11-19 100874041 ENSG00000228598 OTTHUMG00000152534 uc031swo.1 "AI125264|BX114725" NR_046756 +HGNC:13664 MACF1 microtubule-actin crosslinking factor 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "KIAA0465|ACF7|ABP620|KIAA1251|MACF|FLJ45612|FLJ46776" "actin cross-linking factor|620 kDa actin binding protein|macrophin 1|trabeculin-alpha|actin cross-linking family protein 7" "EF-hand domain containing|Plakins" "863|939" 2002-01-09 2016-10-05 23499 ENSG00000127603 OTTHUMG00000007754 uc057ezw.1 AB007934 NM_033044 CCDS435 Q9UPN3 "7635207|10529403" MGI:108559 RGD:1306057 MACF1 608271 +HGNC:33244 MACOM macrophthalmia, colobomatous, with microcornea phenotype phenotype only Approved 2p23-p16 02p23-p16 2007-01-11 2014-02-03 791229 17506091 602499 +HGNC:29598 MACROD1 MACRO domain containing 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 LRP16 2007-07-24 2007-06-11 2014-11-19 28992 ENSG00000133315 OTTHUMG00000167843 uc001nyh.4 AF202922 NM_014067 CCDS8056 Q9BQ69 15691879 MGI:2147583 RGD:628701 MACROD1 610400 +HGNC:16126 MACROD2 MACRO domain containing 2 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 dJ631M13.5 C20orf133 chromosome 20 open reading frame 133 2001-07-17 2007-07-24 2007-07-24 2014-11-18 140733 ENSG00000172264 OTTHUMG00000031919 uc002wot.4 BC101218 NM_080676 "CCDS13120|CCDS33443" A1Z1Q3 MGI:1920149 RGD:1591318 MACROD2 611567 +HGNC:37193 MACROD2-AS1 MACROD2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p12.1 20p12.1 BA318C17.1 NCRNA00186 "non-protein coding RNA 186|MACROD2 antisense RNA 1 (non-protein coding)" 2009-08-18 2011-04-28 2012-08-15 2014-03-12 100379174 ENSG00000235914 OTTHUMG00000031920 uc002woy.6 BX417920 NR_072988 +HGNC:16201 MACROD2-IT1 MACROD2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 20p12.1 20p12.1 bA467D7.4 "C20orf68|NCRNA00227" "chromosome 20 open reading frame 68|non-protein coding RNA 227|MACROD2 intronic transcript 1 (non-protein coding)" 2001-07-17 2011-08-11 2015-02-25 2015-02-25 140848 ENSG00000227927 OTTHUMG00000031917 uc032pbl.1 AI026654 NR_104193 +HGNC:6762 MAD1L1 MAD1 mitotic arrest deficient like 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "HsMAD1|TXBP181|MAD1|PIG9|TP53I9" "MAD1 (mitotic arrest deficient, yeast, homolog)-like 1|MAD1 mitotic arrest deficient-like 1 (yeast)" 1998-09-07 2016-04-11 2016-10-05 8379 ENSG00000002822 OTTHUMG00000151493 uc003slg.2 U33822 NM_003550 "CCDS43539|CCDS78201" Q9Y6D9 "10049595|9546394" MGI:1341857 RGD:1596881 MAD1L1 602686 +HGNC:6763 MAD2L1 MAD2 mitotic arrest deficient-like 1 (yeast) protein-coding gene gene with protein product Approved 4q27 04q27 "MAD2|HSMAD2" MAD2 (mitotic arrest deficient, yeast, homolog)-like 1 1996-11-14 2001-11-28 2015-08-25 4085 ENSG00000164109 OTTHUMG00000132967 uc003idl.3 U65410 NM_002358 CCDS3715 Q13257 "8824189|9345911" MGI:1860374 RGD:1310889 MAD2L1 601467 +HGNC:21059 MAD2L1BP MAD2L1 binding protein protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "CMT2|KIAA0110|dJ261G23.1" 2003-06-23 2015-08-25 9587 ENSG00000124688 OTTHUMG00000014747 uc003ovv.4 BC002904 NM_014628 "CCDS4904|CCDS47431" Q15013 "7788527|12456649" MGI:1913841 RGD:1309175 MAD2L1BP +HGNC:20019 MAD2L1P1 MAD2 mitotic arrest deficient-like 1 (yeast) pseudogene 1 pseudogene pseudogene Approved 14q23.1 14q23.1 MAD2L1P MAD2 mitotic arrest deficient-like 1 (yeast) pseudogene 2003-01-13 2010-02-25 2010-02-25 2010-02-25 326596 NG_002592 +HGNC:6764 MAD2L2 MAD2 mitotic arrest deficient-like 2 (yeast) protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "MAD2B|REV7|POLZ2" "mitotic arrest deficient homolog-like 2|polymerase (DNA-directed), zeta 2, accessory subunit" MAD2 (mitotic arrest deficient, yeast, homolog)-like 2 DNA polymerases 535 1999-06-22 2001-11-28 2016-10-05 10459 ENSG00000116670 OTTHUMG00000002231 uc001asq.5 AF139365 NM_006341 CCDS134 Q9UI95 10366450 MGI:1919140 RGD:1307499 MAD2L2 604094 +HGNC:6765 MADCAM1 mucosal vascular addressin cell adhesion molecule 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MACAM1 mucosal addressin cell adhesion molecule-1 Immunoglobulin like domain containing 594 2000-02-11 2014-11-19 8174 ENSG00000099866 OTTHUMG00000180548 uc002los.5 U43628 NM_130760 "CCDS12028|CCDS12029" Q13477 "9162097|8609404" MGI:103579 RGD:3029 MADCAM1 102670 +HGNC:6766 MADD MAP kinase activating death domain protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "DENN|KIAA0358|RAB3GEP" MAP-kinase activating death domain DENN/MADD domain containing 504 1999-12-17 2016-01-19 2016-01-19 8567 ENSG00000110514 OTTHUMG00000150350 uc001ner.2 AB002356 XM_005253189 "CCDS7930|CCDS7931|CCDS7932|CCDS41642|CCDS44586|CCDS44587|CCDS44588|CCDS44589|CCDS44590" Q8WXG6 "9115275|9796103" MGI:2444672 RGD:619922 MADD 603584 +HGNC:13731 MAEA macrophage erythroblast attacher protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "EMP|GID9" GID complex subunit 9, FYV10 homolog (S. cerevisiae) 2000-11-07 2014-11-18 10296 ENSG00000090316 OTTHUMG00000160169 uc003gda.4 AF084928 NM_005882 "CCDS33936|CCDS33937|CCDS75090|CCDS77887|CCDS77888" Q7L5Y9 9763581 MGI:1891748 RGD:1309877 MAEA 606801 +HGNC:25929 MAEL maelstrom spermatogenic transposon silencer protein-coding gene gene with protein product Approved 1q24.1 01q24.1 "FLJ14904|CT128|SPATA35" "cancer/testis antigen 128|spermatogenesis associated 35" maelstrom homolog (Drosophila) 2005-06-30 2012-12-18 2014-11-19 84944 ENSG00000143194 OTTHUMG00000034432 uc001gdy.3 "AK027810|DQ076156" NM_032858 "CCDS1257|CCDS65712|CCDS72975" Q96JY0 "19693694|18694567" MGI:2138453 RGD:1309333 MAEL 611368 +HGNC:6776 MAF MAF bZIP transcription factor protein-coding gene gene with protein product Approved 16q23.2 16q23.2 c-MAF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog Basic leucine zipper proteins 506 1991-08-01 2016-05-10 2016-10-05 4094 ENSG00000178573 OTTHUMG00000137621 uc002ffm.4 XR_001751902 "CCDS10928|CCDS42198" O75444 14998484 MGI:96909 RGD:3034 MAF 177075 140567 +HGNC:24966 MAF1 MAF1 homolog, negative regulator of RNA polymerase III protein-coding gene gene with protein product Approved 8q24.3 08q24.3 DKFZp586G1123 MAF1 homolog (S. cerevisiae) 2005-05-13 2015-07-02 2015-07-02 84232 ENSG00000179632 OTTHUMG00000165244 uc003zbc.2 NM_032272 CCDS6416 Q9H063 "11230166|11438659" MGI:1916127 RGD:1359315 MAF1 610210 +HGNC:23145 MAFA MAF bZIP transcription factor A protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "RIPE3b1|hMafA" v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog A Basic leucine zipper proteins 506 2004-01-30 2016-05-10 2016-05-10 389692 ENSG00000182759 OTTHUMG00000165037 uc003yyc.3 AY083269 NM_201589 CCDS34955 Q8NHW3 MGI:2673307 RGD:1562627 MAFA 610303 +HGNC:51203 MAFA-AS1 MAFA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 "RP11-909N17.3|TCONS_00014882" 2014-08-07 2014-08-07 104326051 ENSG00000254338 OTTHUMG00000165017 "BE503758|BF448373|BX114021" NR_126358 25089627 +HGNC:6408 MAFB MAF bZIP transcription factor B protein-coding gene gene with protein product Approved 20q12 20q12 KRML "Kreisler (mouse) maf-related leucine zipper homolog|v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog B" Basic leucine zipper proteins 506 1999-05-05 2001-11-30 2016-05-10 2016-05-10 9935 ENSG00000204103 OTTHUMG00000033052 uc002xji.4 AF134157 NM_005461 CCDS13311 Q9Y5Q3 10444328 MGI:104555 RGD:2982 MAFB 608968 293867 +HGNC:6777 MAFD1 major affective disorder 1 phenotype phenotype only Approved 18p 18p BPAD 2001-06-22 2012-10-02 4095 8533768 125480 +HGNC:6778 MAFD2 major affective disorder 2 phenotype phenotype only Approved Xq27-q28 Xq27-q28 2001-06-22 2012-10-02 4096 309200 +HGNC:6779 MAFD3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:6780 MAFF MAF bZIP transcription factor F protein-coding gene gene with protein product Approved 22q13.1 22q13.1 hMafF v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog F Basic leucine zipper proteins 506 1999-10-29 2016-05-10 2016-05-10 23764 ENSG00000185022 OTTHUMG00000151163 uc003avc.4 AJ010857 NM_001161572 "CCDS13968|CCDS54528" Q9ULX9 10591208 MGI:96910 RGD:1309531 MAFF 604877 +HGNC:6781 MAFG MAF bZIP transcription factor G protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "MGC13090|MGC20149" "transcription factor MafG|basic leucine zipper transcription factor MafG" v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog G Basic leucine zipper proteins 506 1997-07-22 2016-05-10 2016-05-10 4097 ENSG00000197063 OTTHUMG00000177958 uc002kcn.4 AF059195 NM_002359 CCDS11793 O15525 9763667 MGI:96911 RGD:619953 MAFG 602020 +HGNC:43649 MAFG-AS1 MAFG antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 "MAFG antisense RNA 1 (non-protein coding)|MAFG antisense RNA 1" 2011-12-19 2012-08-16 2012-10-12 92659 ENSG00000265688 OTTHUMG00000178435 uc021ufh.2 BC009233 NR_015454 12477932 +HGNC:31102 MAFIP MAFF interacting protein (pseudogene) pseudogene pseudogene Approved 14 not on reference assembly 14 not on reference assembly "FLJ35473|FLJ00219|FLJ39633|MIP|pp5644|TEKT4P4" tektin 4 pseudogene 4 MAFF interacting protein 2009-02-18 2012-03-26 2015-02-04 727764 ENSG00000278212 OTTHUMG00000188065 "AK074146|AF289559" NR_046439 Q8WZ33 "16549056|15881666" +HGNC:6782 MAFK MAF bZIP transcription factor K protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "P18|NFE2U" "basic-leucine zipper transcription factor MafK|erythroid transcription factor NF-E2 p18 subunit|nuclear factor erythroid-2, ubiquitous (p18)" v-maf avian musculoaponeurotic fibrosarcoma oncogene homolog K Basic leucine zipper proteins 506 1998-06-24 2016-05-10 2016-10-05 7975 ENSG00000198517 OTTHUMG00000151453 uc003skr.4 AF059194 NM_002360 CCDS5325 O60675 9763667 MGI:99951 RGD:628633 MAFK 600197 +HGNC:51525 MAFTRR MAF transcriptional regulator RNA non-coding RNA RNA, long non-coding Approved 16q23.2 16q23.2 linc-MAF-4 Long non-coding RNAs 788 2015-02-18 2015-02-18 102467146 ENSG00000261390 OTTHUMG00000176976 NR_104663 25621826 616264 +HGNC:6783 MAG myelin associated glycoprotein protein-coding gene gene with protein product Approved 19q13.1 19q13.1 "SIGLEC4A|SIGLEC-4A|S-MAG" sialic acid binding Ig-like lectin 4A GMA "C2-set domain containing|I-set domain containing|Sialic acid binding Ig like lectins" "592|593|745" 2001-06-22 2014-11-18 4099 ENSG00000105695 OTTHUMG00000183296 uc002nyy.3 M29273 NM_080600 "CCDS12455|CCDS12456|CCDS56090" P20916 "2476987|8432525" MGI:96912 RGD:3035 MAG 159460 460860 +HGNC:6796 MAGEA1 MAGE family member A1 protein-coding gene gene with protein product Approved Xq28 Xq28 "MGC9326|CT1.1" "melanoma-associated antigen 1|melanoma-associated antigen MZ2-E|melanoma antigen MAGE-1|melanoma antigen family A 1|cancer/testis antigen family 1, member 1" MAGE1 "melanoma antigen family A, 1 (directs expression of antigen MZ2-E)|melanoma antigen family A1" MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4100 ENSG00000198681 OTTHUMG00000024192 uc004fhf.3 NM_004988 CCDS76051 P43355 1840703 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEA1 MAGEA1 300016 +HGNC:6800 MAGEA2 MAGE family member A2 protein-coding gene gene with protein product Approved Xq28 Xq28 "MAGEA2A|CT1.2" cancer/testis antigen family 1, member 2 MAGE2 melanoma antigen family A2 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4101 ENSG00000268606 OTTHUMG00000188622 uc010ntr.2 BC063681 NM_005361 CCDS76049 P43356 "1840703|8575766" MAGEA2 300173 +HGNC:19340 MAGEA2B MAGE family member A2B protein-coding gene gene with protein product Approved Xq28 Xq28 "MAGEA2b|MAGE2|MGC16973|MAGEA2" melanoma antigen family A2B MAGE family 1136 2004-06-08 2015-11-13 2015-11-13 266740 ENSG00000183305 OTTHUMG00000022645 uc010ntm.3 BC013098 NM_153488 CCDS76046 P43356 8575766 MAGEA2B 300549 +HGNC:6801 MAGEA3 MAGE family member A3 protein-coding gene gene with protein product Approved Xq28 Xq28 "HYPD|HIP8|MGC14613|CT1.3" "melanoma-associated antigen 3|antigen MZ2-D|MAGE-3 antigen|cancer/testis antigen family 1, member 3" MAGE3 melanoma antigen family A3 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4102 ENSG00000221867 OTTHUMG00000022640 uc033faf.1 NM_005362 CCDS76045 P43357 "1840703|8575766" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEA3 MAGEA3 300174 +HGNC:6802 MAGEA4 MAGE family member A4 protein-coding gene gene with protein product Approved Xq28 Xq28 "MAGE4A|MAGE4B|MAGE-41|MAGE-X2|MGC21336|CT1.4" "melanoma-associated antigen 4|cancer/testis antigen family 1, member 4" MAGE4 melanoma antigen family A4 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4103 ENSG00000147381 OTTHUMG00000024174 uc004ffa.3 NM_002362 CCDS14702 P43358 8575766 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEA4 MAGEA4 300175 +HGNC:6803 MAGEA5 MAGE family member A5 other unknown Approved Xq28 Xq28 "MGC129526|CT1.5" "MAGE-5a antigen|MAGE-5b antigen|cancer/testis antigen family 1, member 5" MAGE5 melanoma antigen family A5 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4104 ENSG00000242520 OTTHUMG00000160288 NM_021049 P43359 8575766 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEA5 MAGEA5 300340 PGOHUM00000241601 +HGNC:6804 MAGEA6 MAGE family member A6 protein-coding gene gene with protein product Approved Xq28 Xq28 CT1.6 "MAGE-6 antigen|melanoma-associated antigen 6|melanoma antigen family A 6|cancer/testis antigen family 1, member 6" MAGE6 melanoma antigen family A6 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4105 ENSG00000197172 OTTHUMG00000022642 uc033fao.2 NM_005363 CCDS76050 P43360 8575766 MAGEA6 300176 +HGNC:6805 MAGEA7P MAGE family member A7, pseudogene pseudogene pseudogene Approved Xq28 Xq28 "MAGE7|MAGEA7" melanoma antigen family A7, pseudogene MAGE family 1136 1994-04-04 2011-05-04 2015-11-13 2015-11-13 4106 ENSG00000224732 OTTHUMG00000022631 U10692 NG_001156 8575766 PGOHUM00000305386 +HGNC:6806 MAGEA8 MAGE family member A8 protein-coding gene gene with protein product Approved Xq28 Xq28 "MGC2182|CT1.8" "MAGE-8 antigen|cancer/testis antigen family 1, member 8" MAGE8 melanoma antigen family A8 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4107 ENSG00000156009 OTTHUMG00000022635 uc022cgp.1 NM_005364 CCDS14692 P43361 8575766 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEA8 MAGEA8 300341 +HGNC:45093 MAGEA8-AS1 MAGEA8 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved Xq28 Xq28 RP5-869M20.2 2013-02-10 2013-02-13 2013-02-13 2013-02-13 101410537 ENSG00000230899 OTTHUMG00000022634 uc065bnz.1 CB961226 NR_102703 23223008 +HGNC:6807 MAGEA9 MAGE family member A9 protein-coding gene gene with protein product Approved Xq28 Xq28 "MGC8421|CT1.9" "MAGE-9 antigen|melanoma-associated antigen 9|cancer/testis antigen family 1, member 9" MAGE9 melanoma antigen family A9 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4108 ENSG00000123584 OTTHUMG00000022621 uc004fdv.3 NM_005365 CCDS14691 P43362 8575766 RGD:1565494 MAGEA9 300342 +HGNC:31909 MAGEA9B MAGE family member A9B protein-coding gene gene with protein product Approved Xq28 Xq28 melanoma antigen family A9B MAGE family 1136 2006-07-04 2015-11-13 2015-11-13 728269 ENSG00000267978 OTTHUMG00000188533 uc004fdk.4 NM_001080790 CCDS35423 P43362 MAGEA9B 300764 +HGNC:6797 MAGEA10 MAGE family member A10 protein-coding gene gene with protein product Approved Xq28 Xq28 "MGC10599|CT1.10" "MAGE-10 antigen|melanoma-associated antigen 10|cancer/testis antigen family 1, member 10" MAGE10 melanoma antigen family A10 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4109 ENSG00000124260 OTTHUMG00000024180 uc004ffk.4 NM_021048 CCDS14705 P43363 8575766 MGI:3588211 MAGEA10 300343 +HGNC:6798 MAGEA11 MAGE family member A11 protein-coding gene gene with protein product Approved Xq28 Xq28 "MAGE-11|MAGEA-11|MGC10511|CT1.11" "MAGE-11 antigen|melanoma-associated antigen 11|cancer/testis antigen family 1, member 11" MAGE11 melanoma antigen family A11 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4110 ENSG00000185247 OTTHUMG00000022633 uc004fdq.4 NM_005366 CCDS48180 P43364 8575766 MGI:1333839 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEA11 MAGEA11 300344 +HGNC:6799 MAGEA12 MAGE family member A12 protein-coding gene gene with protein product Approved Xq28 Xq28 CT1.12 cancer/testis antigen family 1, member 12 MAGE12 melanoma antigen family A12 MAGE family 1136 1994-04-04 2015-11-13 2015-11-13 4111 ENSG00000213401 OTTHUMG00000022650 uc004fgc.3 NM_005367 CCDS76048 P43365 8575766 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEA12 MAGEA12 300177 +HGNC:35154 MAGEA13P MAGE family member A13, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 LOC139363 melanoma antigen family A13, pseudogene MAGE family 1136 2008-10-15 2015-11-13 2015-11-13 139363 ENSG00000183981 OTTHUMG00000022527 XR_040398 A6NCF6 RGD:1359246 MAGEA13P PGOHUM00000305357 +HGNC:6808 MAGEB1 MAGE family member B1 protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 "MAGEL1|MAGE-Xp|DAM10|MGC9322|CT3.1" "DSS/AHC critical interval MAGE superfamily 10|cancer/testis antigen family 3, member 1" melanoma antigen family B1 MAGE family 1136 1997-08-15 2015-11-13 2016-10-05 4112 ENSG00000214107 OTTHUMG00000021322 uc004dcc.4 NM_002363 CCDS14222 P43366 "7761436|9441743" "MGI:105109|MGI:105117|MGI:105118" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEB1 MAGEB1 300097 +HGNC:6809 MAGEB2 MAGE family member B2 protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 "DAM6|MAGE-XP-2|MGC26438|CT3.2" "DSS/AHC critical interval MAGE superfamily 6|melanoma-associated antigen B2|cancer/testis antigen family 3, member 2" melanoma antigen family B2 MAGE family 1136 1997-08-15 2015-11-13 2016-10-05 4113 ENSG00000099399 OTTHUMG00000021319 uc004dbz.4 AF015766 NM_002364 CCDS14219 O15479 9441743 MGI:2148568 RGD:1560904 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEB2 MAGEB2 300098 +HGNC:6810 MAGEB3 MAGE family member B3 protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 CT3.5 cancer/testis antigen family 3, member 5 melanoma antigen family B3 MAGE family 1136 1997-08-15 2015-11-13 2016-10-05 4114 ENSG00000198798 OTTHUMG00000021320 uc004dca.3 AK057441 NM_002365 CCDS14220 O15480 9441743 RGD:1562343 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEB3 MAGEB3 300152 +HGNC:6811 MAGEB4 MAGE family member B4 protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 "MGC33144|CT3.6" "melanoma-associated antigen B4|cancer/testis antigen family 3, member 6" melanoma antigen family B4 MAGE family 1136 1997-08-15 2015-11-13 2016-10-05 4115 ENSG00000120289 OTTHUMG00000021321 uc004dcb.4 NM_002367 CCDS14221 O15481 9441743 RGD:1565746 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEB4 MAGEB4 300153 +HGNC:23795 MAGEB5 MAGE family member B5 protein-coding gene gene with protein product Approved Xp21.3 Xp21.3 "MAGE-B5|CT3.3" cancer/testis antigen family 3, member 3 melanoma antigen family B5 MAGE family 1136 2003-12-10 2015-11-13 2016-10-05 347541 ENSG00000188408 OTTHUMG00000021288 uc031thc.1 AF333705 XM_293407 CCDS65233 Q9BZ81 10861452 "MGI:2148169|MGI:3712084" RGD:1563078 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEB5 MAGEB5 300466 +HGNC:23796 MAGEB6 MAGE family member B6 protein-coding gene gene with protein product Approved Xp21.3 Xp21.3 "FLJ40242|MAGE-B6|MAGEB6A|CT3.4" cancer/testis antigen family 3, member 4 melanoma antigen family B6 MAGE family 1136 2003-12-10 2015-11-13 2016-10-05 158809 ENSG00000176746 OTTHUMG00000021285 uc004dbr.3 AF320514 NM_173523 CCDS14217 Q8N7X4 10861452 MGI:3643138 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEB6 MAGEB6 300467 +HGNC:28824 MAGEB6P1 MAGE family member B6 pseudogene 1 other unknown Approved Xp21.3 Xp21.3 MAGEB6B "melanoma antigen family B, 6B|melanoma antigen family B, 6B pseudogene|melanoma antigen family B6 pseudogene 1" 2004-08-09 2011-05-04 2015-11-13 2016-10-05 392433 ENSG00000232030 OTTHUMG00000021284 uc284raa.1 NG_008389 MAGEB6P1 PGOHUM00000241672 +HGNC:25377 MAGEB10 MAGE family member B10 protein-coding gene gene with protein product Approved Xp21.3 Xp21.3 FLJ32965 melanoma antigen family B10 MAGE family 1136 2004-09-01 2015-11-13 2015-11-13 139422 ENSG00000177689 OTTHUMG00000046084 uc004dbw.3 NM_182506 CCDS35221 Q96LZ2 11454705 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEB10 MAGEB10 300761 +HGNC:21188 MAGEB16 MAGE family member B16 protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 "melanoma antigen family B, 16 (pseudogene)|melanoma antigen family B16" MAGE family 1136 2005-01-26 2015-11-13 2015-11-13 139604 ENSG00000189023 OTTHUMG00000021348 uc010ngt.1 XM_011545453 CCDS43927 A2A368 11454705 MGI:1919217 RGD:1562365 MAGEB16 300762 +HGNC:17418 MAGEB17 MAGE family member B17 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "melanoma antigen family B, 17 (pseudogene)|melanoma antigen family B17" MAGE family 1136 2005-01-26 2015-11-13 2015-11-13 645864 ENSG00000182798 OTTHUMG00000021188 uc031tgu.2 XM_066701 CCDS59524 A8MXT2 11454705 "MGI:3643982|MGI:3645128" RGD:1561997 MAGEB17 300763 +HGNC:28515 MAGEB18 MAGE family member B18 protein-coding gene gene with protein product Approved Xp21.3 Xp21.3 MGC33889 melanoma antigen family B18 MAGE family 1136 2005-06-01 2015-11-13 2015-11-13 286514 ENSG00000176774 OTTHUMG00000021282 uc004dbq.3 AK057361 NM_173699 CCDS14216 Q96M61 MGI:3045344 RGD:1560369 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEB18 MAGEB18 +HGNC:6812 MAGEC1 MAGE family member C1 protein-coding gene gene with protein product Approved Xq27.2 Xq27.2 "MAGE-C1|CT7|MGC39366|CT7.1" cancer/testis antigen family 7, member 1 melanoma antigen family C1 MAGE family 1136 1999-04-23 2015-11-13 2016-10-05 9947 ENSG00000155495 OTTHUMG00000022569 uc004fbt.4 AF064589 NM_005462 CCDS35417 O60732 "9485030|9618514" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEC1 MAGEC1 300223 +HGNC:13574 MAGEC2 MAGE family member C2 protein-coding gene gene with protein product Approved Xq27.2 Xq27.2 "CT10|MAGE-C2" cancer/testis antigen 10 MAGEE1 "melanoma antigen, family E, 1, cancer/testis specific|melanoma antigen family C2" MAGE family 1136 2000-09-26 2004-06-09 2015-11-13 2016-10-05 51438 ENSG00000046774 OTTHUMG00000022574 uc004fbu.3 AF116195 NM_016249 CCDS14678 Q9UBF1 10699956 RGD:1563272 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEC2 MAGEC2 300468 +HGNC:23798 MAGEC3 MAGE family member C3 protein-coding gene gene with protein product Approved Xq27.2 Xq27.2 "HCA2|MAGE-C3|CT7.2" cancer/testis antigen family 7, member 2 melanoma antigen family C3 MAGE family 1136 2003-12-10 2015-11-13 2015-11-13 139081 ENSG00000165509 OTTHUMG00000022570 uc011mwp.2 AF490508 NM_138702 "CCDS14676|CCDS14677" Q8TD91 10861452 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEC3 MAGEC3 300469 +HGNC:6813 MAGED1 MAGE family member D1 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "NRAGE|DLXIN-1" melanoma antigen family D1 MAGE family 1136 1999-04-14 2015-11-13 2016-10-05 9500 ENSG00000179222 OTTHUMG00000021540 uc004dpm.5 AF124440 NM_001005332 "CCDS14337|CCDS35279" Q9Y5V3 10409427 MGI:1930187 RGD:70898 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGED1 MAGED1 300224 +HGNC:16353 MAGED2 MAGE family member D2 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "JCL-1|BCG1|11B6|MAGE-D2|HCA10|MAGED|MGC8386" "hepatocellular carcinoma associated protein|breast cancer associated gene 1|melanoma-associated antigen D2|hepatocellular carcinoma-associated protein HCA10" melanoma antigen family D2 MAGE family 1136 2001-08-16 2015-11-13 2016-10-05 10916 ENSG00000102316 OTTHUMG00000021638 uc004dtk.3 AF128527 NM_014599 CCDS14362 Q9UNF1 MGI:1933391 RGD:70899 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGED2 MAGED2 300470 459084 +HGNC:23793 MAGED4 MAGE family member D4 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "MAGE1|MGC3210|KIAA1859|MAGE-E1" melanoma antigen family D4 MAGE family 1136 2003-12-23 2015-11-13 2016-10-05 728239 ENSG00000154545 OTTHUMG00000042235 uc004dpw.6 AF320908 NM_001098800 "CCDS48116|CCDS65261" Q96JG8 11406556 MAGED4 300702 +HGNC:22880 MAGED4B MAGE family member D4B protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 melanoma antigen family D4B MAGE family 1136 2006-07-04 2015-11-13 2016-10-05 81557 ENSG00000187243 OTTHUMG00000021546 uc004dpt.5 XM_006724607 "CCDS14338|CCDS35281|CCDS56602" Q96JG8 MAGED4B 300765 +HGNC:24934 MAGEE1 MAGE family member E1 protein-coding gene gene with protein product Approved Xq13.3 Xq13.3 "KIAA1587|DAMAGE" melanoma antigen family E1 MAGE family 1136 2004-06-25 2015-11-13 2016-10-05 57692 ENSG00000198934 OTTHUMG00000021879 uc004ecm.3 AF490507 NM_020932 CCDS14433 Q9HCI5 14623885 MGI:2148149 RGD:1560259 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEE1 MAGEE1 300759 +HGNC:24935 MAGEE2 MAGE family member E2 protein-coding gene gene with protein product Approved Xq13.3 Xq13.3 HCA3 melanoma antigen family E2 MAGE family 1136 2004-06-08 2015-11-13 2016-10-05 139599 ENSG00000186675 OTTHUMG00000021870 uc004ecj.3 AF490509 NM_138703 CCDS14431 Q8TD90 11454705 MGI:2148316 RGD:1564872 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEE2 MAGEE2 300760 +HGNC:29639 MAGEF1 MAGE family member F1 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 melanoma antigen family F1 MAGE family 1136 2004-06-07 2015-11-13 2016-10-05 64110 ENSG00000177383 OTTHUMG00000156712 uc003fpa.4 AF295378 NM_022149 CCDS3269 Q9HAY2 11313144 MAGEF1 609267 +HGNC:24092 MAGEH1 MAGE family member H1 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 APR1 melanoma antigen family H1 MAGE family 1136 2004-05-27 2015-11-13 2016-10-05 28986 ENSG00000187601 OTTHUMG00000021655 uc004dum.5 AF320912 NM_014061 CCDS14369 Q9H213 "12414813|9485030" MGI:1922875 RGD:1359316 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGEH1 MAGEH1 300548 +HGNC:6814 MAGEL2 MAGE family member L2 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 nM15 NDNL1 "MAGE-like 2|melanoma antigen family L2" MAGE family 1136 1999-10-29 2015-11-13 2016-10-12 54551 ENSG00000254585 OTTHUMG00000167582 uc001ywj.5 AJ243531 NM_019066 CCDS73700 Q9UJ55 10556298 MGI:1351648 RGD:1583615 LRG_1046|http://www.lrg-sequence.org/LRG/LRG_1046 MAGEL2 605283 123324 +HGNC:946 MAGI1 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "BAP1|MAGI-1|TNRC19|AIP3|WWP3" BAIAP1 BAI1-associated protein 1 "Trinucleotide repeat containing|Membrane associated guanylate kinases|PDZ domain containing" "775|904|1220" 1998-09-29 2005-05-10 2005-05-10 2014-11-19 9223 ENSG00000151276 OTTHUMG00000157554 uc003dmo.4 AB010894 NM_004742 "CCDS33780|CCDS33781|CCDS2904" Q96QZ7 "9647739|9225980" MGI:1203522 RGD:1586025 MAGI1 602625 +HGNC:40091 MAGI1-AS1 MAGI1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 MAGI1 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100873983 ENSG00000240175 OTTHUMG00000158733 uc031san.1 NR_046575 +HGNC:42436 MAGI1-IT1 MAGI1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 MAGI1 intronic transcript 1 (non-protein coding) 2011-07-27 2015-02-25 2015-02-25 151877 ENSG00000272610 OTTHUMG00000186069 uc032rqc.2 +HGNC:18957 MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 protein-coding gene gene with protein product Approved 7q21.11 07q21.11 "AIP1|ARIP1|KIAA0705|ACVRIP1|MAGI-2" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 2005-05-10 2016-10-05 9863 ENSG00000187391 OTTHUMG00000130697 uc003ugx.3 AB014605 NM_012301 "CCDS5594|CCDS75623" Q86UL8 "10681527|9734811" MGI:1354953 RGD:621855 MAGI2 606382 +HGNC:40860 MAGI2-AS1 MAGI2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q21.11 07q21.11 MAGI2 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874020 ENSG00000251276 OTTHUMG00000155510 uc064esz.1 +HGNC:40861 MAGI2-AS2 MAGI2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 7q21.11 07q21.11 MAGI2 antisense RNA 2 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874021 ENSG00000226978 OTTHUMG00000155511 uc031syd.1 NR_046689 +HGNC:40862 MAGI2-AS3 MAGI2 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 7q21.11 07q21.11 MAGI2 antisense RNA 3 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100505881 ENSG00000234456 OTTHUMG00000155465 uc022agr.2 NR_038344 +HGNC:30058 MAGI2-IT1 MAGI2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 7q21.11 07q21.11 "PR47|MAGI2IT" platelet receptor for type III collagen, 47 kDa MAGI2-IT "MAGI2 intronic transcript (non-protein coding)|MAGI2 intronic transcript 1 (non-protein coding)" 2010-08-16 2011-01-10 2015-02-25 2015-02-25 266671 ENSG00000235751 OTTHUMG00000162682 uc064esy.1 AF521131 12110681 608950 +HGNC:29647 MAGI3 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 MAGI-3 "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 2005-05-10 2015-03-03 260425 ENSG00000081026 OTTHUMG00000011737 uc001edj.4 AF213259 NM_152900 "CCDS860|CCDS44196" Q5TCQ9 "10997877|10748157" MGI:1923484 RGD:621362 MAGI3 615943 +HGNC:30006 MAGIX MAGI family member, X-linked protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "PDZX|JM10|FLJ21687" PDZ domain containing 1220 2007-03-14 2015-01-29 79917 ENSG00000269313 OTTHUMG00000188218 uc033ecx.2 AK025340 NM_024859 "CCDS48106|CCDS48107|CCDS75976" Q9H6Y5 MGI:1859644 RGD:1549729 MAGIX +HGNC:6815 MAGOH mago homolog, exon junction complex core component protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "MAGOHA|MAGOH1" "mago-nashi (Drosophila) homolog, proliferation-associated|mago-nashi homolog, proliferation-associated (Drosophila)" Exon junction complex 1238 1997-02-11 2015-07-13 2016-03-24 4116 ENSG00000162385 OTTHUMG00000008932 uc001cvf.2 AF035940 NM_002370 CCDS577 P61326 9479507 MGI:1330312 RGD:1305174 MAGOH 602603 +HGNC:30148 MAGOH2P mago homolog 2, pseudogene pseudogene pseudogene Approved 17p13.1 17p13.1 MAGOH2 mago-nashi homolog 2, proliferation-associated (Drosophila) 2005-04-07 2014-12-17 2015-07-13 2015-07-13 100506898 ENSG00000264176 OTTHUMG00000178044 "AW371909|AY672100" NR_049723 PGOHUM00000293956 +HGNC:20020 MAGOH3P mago homolog 3, pseudogene pseudogene pseudogene Approved 14q24.1 14q24.1 MAGOHP1 MAGOHP "mago-nashi homolog, proliferation-associated pseudogene (Drosophila)|mago-nashi homolog, proliferation-associated (Drosophila) pseudogene" 2003-01-13 2010-02-25 2015-07-13 2015-07-13 90352 ENSG00000270975 OTTHUMG00000184601 NG_002581 PGOHUM00000292712 +HGNC:25504 MAGOHB mago homolog B, exon junction complex core component protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "FLJ10292|MGN2" mago-nashi homolog B (Drosophila) 2008-01-24 2015-07-13 2015-09-03 55110 ENSG00000111196 OTTHUMG00000168407 uc001qyq.3 NM_018048 "CCDS8628|CCDS76532" Q96A72 23917022 MGI:1913691 RGD:1597384 MAGOHB +HGNC:28880 MAGT1 magnesium transporter 1 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "DKFZp564K142|IAP|OST3B|MRX95" oligosaccharyltransferase 3 homolog B (S. cerevisiae) "X-linked mental retardation|Oligosaccharyltransferase complex subunits" "103|445" 2008-01-18 2016-10-12 84061 ENSG00000102158 OTTHUMG00000021882 uc004fof.4 NM_032121 CCDS14436 Q9H0U3 "15804357|25135935" MGI:1914325 RGD:620094 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAGT1|LRG_353|http://www.lrg-sequence.org/LRG/LRG_353" MAGT1 300715 250175 +HGNC:26198 MAIP1 matrix AAA peptidase interacting protein 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "DKFZp666A212|FLJ22555" C2orf47 chromosome 2 open reading frame 47 2006-09-01 2016-09-30 2016-09-30 2016-09-30 79568 ENSG00000162972 OTTHUMG00000132771 uc002uvm.4 BC017959 NM_024520 CCDS2329 Q8WWC4 "25048349|27642048" MGI:1915365 RGD:1303159 +HGNC:27441 MAJIN membrane anchored junction protein protein-coding gene gene with protein product Approved 11q13.1 11q13.1 C11orf85 chromosome 11 open reading frame 85 2008-07-18 2016-05-17 2016-05-17 2016-05-17 283129 ENSG00000168070 OTTHUMG00000165632 uc058dbv.1 "AK093130|BC033501" NM_001037225 "CCDS31603|CCDS73316" Q3KP22 26548954 MGI:1923913 RGD:1563886 617130 +HGNC:6816 MAK male germ cell associated kinase protein-coding gene gene with protein product Approved 6p24.2 06p24.2 "dJ417M14.2|RP62" male germ cell-associated kinase 1994-02-18 2016-01-29 2016-01-29 4117 ENSG00000111837 OTTHUMG00000014247 uc003mzm.4 NM_005906 "CCDS4516|CCDS75398|CCDS75399" P20794 16951154 MGI:96913 RGD:3036 MAK 154235 274231 objectId:2061 +HGNC:13703 MAK16 MAK16 homolog protein-coding gene gene with protein product Approved 8p12 08p12 MAK16L RBM13 "RNA binding motif protein 13|MAK16 homolog (S. cerevisiae)" RNA binding motif containing 725 2000-10-19 2008-06-04 2015-07-03 2015-08-25 84549 ENSG00000198042 OTTHUMG00000163957 uc003xjj.4 AF251062 NM_032509 CCDS6089 Q9BXY0 MGI:1915170 RGD:1311297 MAK16 +HGNC:6817 MAL mal, T-cell differentiation protein protein-coding gene gene with protein product Approved 2q11.1 02q11.1 MyD88-adapter-like 1986-01-01 2016-05-03 2016-05-03 4118 ENSG00000172005 OTTHUMG00000132011 uc002stx.3 NM_002371 "CCDS2006|CCDS2007|CCDS2008|CCDS2009" P21145 12072368 MGI:892970 RGD:3037 MAL 188860 +HGNC:13634 MAL2 mal, T-cell differentiation protein 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 8q23 08q23 MAL proteolipid protein 2 2001-09-05 2011-01-26 2011-01-26 114569 ENSG00000147676 OTTHUMG00000164973 uc033bxh.1 AL117612 NM_052886 CCDS75780 Q969L2 11549320 MGI:2146021 RGD:735066 609684 +HGNC:29665 MALAT1 metastasis associated lung adenocarcinoma transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 11q13.1 11q13.1 "PRO1073|MALAT-1|NCRNA00047|HCN|NEAT2|LINC00047|mascRNA" "metastasis associated in lung adenocarcinoma transcript 1|non-protein coding RNA 47|hepcarcin|nuclear enriched abundant transcript 2|nuclear paraspeckle assembly transcript 2 (non-protein coding)|long intergenic non-protein coding RNA 47" Long non-coding RNAs 788 2004-06-25 2007-11-20 2014-10-22 378938 ENSG00000251562 OTTHUMG00000166322 uc010roh.5 AF001540 NR_002819 Q9UHZ2 "12970751|22560368" MGI:1919539 MALAT1 607924 Malat1 +HGNC:6818 MALL mal, T-cell differentiation protein like protein-coding gene gene with protein product Approved 2q13 02q13 BENE 1997-10-08 2016-05-03 2016-05-03 7851 ENSG00000144063 OTTHUMG00000131196 uc002tfk.3 U17077 NM_005434 CCDS2085 Q13021 9326933 MGI:2385152 RGD:1310869 MALL 602022 +HGNC:24331 MALRD1 MAM and LDL receptor class A domain containing 1 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 "bA265G8.2|Diet1" C10orf112 chromosome 10 open reading frame 112 2004-05-27 2013-12-13 2013-12-13 2015-09-03 340895 ENSG00000204740 OTTHUMG00000017779 KC843478 XM_295865 CCDS73071 Q5VYJ5 19103277 MGI:1928271 RGD:2320868 +HGNC:21721 MALSU1 mitochondrial assembly of ribosomal large subunit 1 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 mtRsfA C7orf30 chromosome 7 open reading frame 30 2003-07-14 2012-02-20 2012-02-20 2014-11-19 115416 ENSG00000156928 OTTHUMG00000128443 uc003swd.2 BC012331 NM_138446 CCDS5381 Q96EH3 "22238376|22238375" MGI:1922843 RGD:1306936 614624 +HGNC:6819 MALT1 MALT1 paracaspase protein-coding gene gene with protein product Approved 18q21.32 18q21.32 PCASP1 "MALT1 protease|paracaspase 1" MLT mucosa associated lymphoid tissue lymphoma translocation gene 1 Immunoglobulin like domain containing 594 1999-08-02 2014-12-01 2016-10-05 10892 ENSG00000172175 OTTHUMG00000132761 uc002lhm.3 NM_006785 "CCDS11967|CCDS11968" Q9UDY8 "10339464|10406266|10523859|11090634|26377317" MGI:2445027 RGD:1309195 MALT1 604860 159756 C14.026 +HGNC:23673 MAMDC2 MAM domain containing 2 protein-coding gene gene with protein product Approved 9q21.12 09q21.12 MGC21981 2003-12-01 2016-10-05 256691 ENSG00000165072 OTTHUMG00000019990 uc004ahm.3 BC040299 NM_153267 CCDS6631 Q7Z304 MGI:1918988 RGD:1305129 MAMDC2 612879 +HGNC:48719 MAMDC2-AS1 MAMDC2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q21.12 09q21.12 2013-06-07 2013-06-07 100507244 ENSG00000204706 OTTHUMG00000019986 NR_040076 +HGNC:24083 MAMDC4 MAM domain containing 4 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "AEGP|DKFZp434M1411" "apical early endosomal glycoprotein precursor|endotubin" 2005-08-22 2014-11-19 158056 ENSG00000177943 OTTHUMG00000020951 uc064xfc.1 AL834531 NM_206920 CCDS7010 Q6UXC1 7829488 MGI:2685841 RGD:708583 MAMDC4 +HGNC:13632 MAML1 mastermind like transcriptional coactivator 1 protein-coding gene gene with protein product Approved 5q35 05q35 "KIAA0200|Mam-1" mastermind homolog "mastermind (drosophila)-like 1|mastermind-like 1 (Drosophila)" 2001-07-19 2015-11-19 2015-11-19 9794 ENSG00000161021 OTTHUMG00000163237 uc003mkm.3 D83785 NM_014757 CCDS34315 Q92585 "11101851|11390662" MGI:1890504 RGD:1308631 MAML1 605424 +HGNC:16259 MAML2 mastermind like transcriptional coactivator 2 protein-coding gene gene with protein product Approved 11q21 11q21 "KIAA1819|MAM3" "mastermind (Drosophila)-like 2|mastermind-like 2 (Drosophila)" 2002-11-04 2015-11-19 2016-10-05 84441 ENSG00000184384 OTTHUMG00000167677 uc001pfw.3 AB058722 XM_011543023 CCDS44714 Q8IZL2 "12370315|12386158" MGI:2389460 RGD:1587536 MAML2 607537 +HGNC:16272 MAML3 mastermind like transcriptional coactivator 3 protein-coding gene gene with protein product Approved 4q31.1 04q31.1 "KIAA1816|MAM2|CAGH3|GDN" mastermind (drosophila)-like 3 TNRC3 "trinucleotide repeat containing 3|mastermind-like 3 (Drosophila)" Trinucleotide repeat containing 775 2002-11-04 2015-11-19 2015-11-19 55534 ENSG00000196782 OTTHUMG00000161441 uc062zte.1 AB058719 NM_018717 CCDS54805 Q96JK9 "12370315|12386158" MGI:2389461 RGD:1308177 MAML3 608991 +HGNC:2568 MAMLD1 mastermind like domain containing 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "CG1|F18" CXorf6 chromosome X open reading frame 6 1999-05-18 2008-01-03 2015-11-19 2015-11-19 10046 ENSG00000013619 OTTHUMG00000024157 uc065boq.1 U46023 NM_005491 "CCDS14693|CCDS55525|CCDS55526" Q13495 "9169146|17086185|18162467" MGI:3045303 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAMLD1 MAMLD1 300120 159494 +HGNC:26689 MAMSTR MEF2 activating motif and SAP domain containing transcriptional regulator protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "MASTR|FLJ36070" MEF2-activating SAP transcriptional regulator 2009-05-08 2014-11-19 284358 ENSG00000176909 OTTHUMG00000183322 uc002pkf.3 AK093389 NM_182574 "CCDS12730|CCDS46137|CCDS74415" Q6ZN01 16818234 MGI:1921740 RGD:1588652 MAMSTR 610349 +HGNC:6821 MAN1A1 mannosidase alpha class 1A member 1 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 mannosidase, alpha, class 1A, member 1 Mannosidases alpha class 1 1193 1997-07-01 2016-01-22 2016-10-05 4121 ENSG00000111885 OTTHUMG00000015472 uc003pym.3 AK025599 NM_005907 CCDS5122 P33908 8223597 MGI:104677 RGD:1310891 MAN1A1 604344 3.2.1.113 +HGNC:6822 MAN1A2 mannosidase alpha class 1A member 2 protein-coding gene gene with protein product Approved 1p12 01p12 MAN1B mannosidase, alpha, class 1A, member 2 Mannosidases alpha class 1 1193 1999-08-12 2016-01-22 2016-10-05 10905 ENSG00000198162 OTTHUMG00000012149 uc001ehd.2 AF027156 NM_006699 CCDS895 O60476 9592125 MGI:104676 RGD:1309767 MAN1A2 604345 +HGNC:50488 MAN1A2P1 mannosidase alpha class 1A member 2 pseudogene 1 pseudogene pseudogene Approved 19q12 19q12 mannosidase, alpha, class 1A, member 2 pseudogene 1 2014-05-07 2016-01-22 2016-01-22 100129507 ENSG00000267799 OTTHUMG00000181945 NG_021747 PGOHUM00000259323 +HGNC:6823 MAN1B1 mannosidase alpha class 1B member 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "MANA-ER|MRT15|ERManI" "endoplasmic reticulum alpha-mannosidase 1|alpha 1,2-mannosidase|endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase 1|ER alpha 1,2-mannosidase|Man9GlcNAc2-specific processing alpha-mannosidase|endoplasmic Reticulum Class I alpha-mannosidase" mannosidase, alpha, class 1B, member 1 Mannosidases alpha class 1 1193 1999-09-28 2016-01-22 2016-01-22 11253 ENSG00000177239 OTTHUMG00000020978 uc004cld.3 AF145732 NM_016219 CCDS7029 Q9UKM7 "10409699|10521544" MGI:2684954 RGD:1563595 MAN1B1 604346 279756 +HGNC:48715 MAN1B1-AS1 MAN1B1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 2013-06-07 2013-06-07 100289341 ENSG00000268996 OTTHUMG00000187259 NR_027447 +HGNC:19080 MAN1C1 mannosidase alpha class 1C member 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 HMIC mannosidase, alpha, class 1C, member 1 Mannosidases alpha class 1 1193 2002-08-06 2016-01-22 2016-10-05 57134 ENSG00000117643 OTTHUMG00000004417 uc001bkm.3 AF261655 NM_020379 CCDS265 Q9NR34 10915796 MGI:2446214 RGD:1309672 MAN1C1 616772 +HGNC:6824 MAN2A1 mannosidase alpha class 2A member 1 protein-coding gene gene with protein product Approved 5q21.3 05q21.3 GOLIM7 golgi integral membrane protein 7 MANA2 mannosidase, alpha, class 2A, member 1 Mannosidases alpha class 2 1194 1993-11-01 2016-01-22 2016-01-22 4124 ENSG00000112893 OTTHUMG00000162834 uc003kou.3 XM_017009472 CCDS34209 Q16706 "1757461|15004235" MGI:104669 RGD:3038 MAN2A1 154582 3.2.1.114 +HGNC:6825 MAN2A2 mannosidase alpha class 2A member 2 protein-coding gene gene with protein product Approved 15q25 15q25 "MANA2X|HsT19662" mannosidase, alpha, class 2A, member 2 Mannosidases alpha class 2 1194 1997-07-01 2016-01-22 2016-01-22 4122 ENSG00000196547 OTTHUMG00000172385 uc010bnz.3 L28821 NM_006122 CCDS32332 P49641 8524845 MGI:2150656 RGD:1310238 MAN2A2 600988 +HGNC:6826 MAN2B1 mannosidase alpha class 2B member 1 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 LAMAN MANB mannosidase, alpha, class 2B, member 1 Mannosidases alpha class 2 1194 2001-06-22 2016-01-22 2016-10-05 4125 ENSG00000104774 OTTHUMG00000156397 uc002mub.3 XM_017026818 "CCDS32919|CCDS54224" O00754 MGI:107286 RGD:3039 MAN2B1 609458 123328 3.2.1.24 +HGNC:29623 MAN2B2 mannosidase alpha class 2B member 2 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 KIAA0935 core-specific lysosomal alpha-1,6-Mannosidase mannosidase, alpha, class 2B, member 2 Mannosidases alpha class 2 1194 2004-04-05 2016-01-22 2016-10-05 23324 ENSG00000013288 OTTHUMG00000160073 uc003gjf.2 BC033307 NM_015274 "CCDS33951|CCDS77898" Q9Y2E5 "10231032|16115860" MGI:1195262 RGD:1308840 MAN2B2 +HGNC:6827 MAN2C1 mannosidase alpha class 2C member 1 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "MANA1|MANA" mannosidase, alpha, class 2C, member 1 Mannosidases alpha class 2 1194 1986-01-01 2016-01-22 2016-01-22 4123 ENSG00000140400 OTTHUMG00000172698 uc002baf.5 AF044414 XM_017022186 "CCDS32298|CCDS58389|CCDS58390|CCDS58391" Q9NTJ4 "1757461|752528" MGI:1920994 RGD:628787 MAN2C1 154580 3.2.1.24 +HGNC:6831 MANBA mannosidase beta protein-coding gene gene with protein product Approved 4q24 04q24 beta-mannosidase A mannosidase, beta A, lysosomal Mannosidases type beta 1196 1990-05-25 2016-01-22 2016-01-22 4126 ENSG00000109323 OTTHUMG00000131123 uc003hwg.4 NM_005908 CCDS3658 O00462 7876128 MGI:88175 RGD:1305785 MANBA 609489 123131 3.2.1.25 +HGNC:15799 MANBAL mannosidase beta like protein-coding gene gene with protein product Approved 20q11.23 20q11.23 dJ1141E15.2 "mannosidase, beta A, lysosomal-like|mannosidase beta A like" Mannosidases type beta 1196 2001-09-17 2016-01-22 2016-01-22 63905 ENSG00000101363 OTTHUMG00000032414 uc002xgv.4 NM_022077 CCDS13293 Q9NQG1 MGI:1916411 RGD:1561447 MANBAL +HGNC:6832 MANBB entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-22 +HGNC:21072 MANEA mannosidase endo-alpha protein-coding gene gene with protein product Approved 6q16.1 06q16.1 "FLJ12838|mandaselin" "glycoprotein endo-alpha-1,2-mannosidase|endomannosidase" mannosidase, endo-alpha Mannosidases endo-alpha 1195 2003-05-15 2016-01-22 2016-10-05 79694 ENSG00000172469 OTTHUMG00000016296 uc003poo.3 AK022900 NM_024641 CCDS5032 Q5SRI9 MGI:2444484 RGD:620327 MANEA 612327 3.2.1.130 +HGNC:43732 MANEA-AS1 MANEA antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 6q16.1 06q16.1 "MANEA antisense RNA 1 (non-protein coding)|MANEA antisense RNA 1" 2012-02-10 2012-10-15 2014-01-30 101927288 ENSG00000261366 OTTHUMG00000175933 uc032xey.2 BC047582 NR_047502 +HGNC:26452 MANEAL mannosidase endo-alpha like protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ31434 mannosidase, endo-alpha-like Mannosidases endo-alpha 1195 2005-05-23 2016-01-22 2016-01-22 149175 ENSG00000185090 OTTHUMG00000004317 uc001cby.3 AK055996 NM_152496 "CCDS426|CCDS44110|CCDS44111" Q5VSG8 MGI:2684896 RGD:1563973 MANEAL +HGNC:15461 MANF mesencephalic astrocyte derived neurotrophic factor protein-coding gene gene with protein product Approved 3p21.2 03p21.2 ARP ARMET "arginine-rich, mutated in early stage tumors|mesencephalic astrocyte-derived neurotrophic factor" 2001-03-30 2009-06-04 2016-01-26 2016-10-05 7873 ENSG00000145050 OTTHUMG00000156897 uc003dbc.4 M83751 NM_006010 CCDS46836 P55145 12794311 MGI:1922090 RGD:1307252 MANF 601916 +HGNC:25505 MANSC1 MANSC domain containing 1 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "FLJ10298|LOH12CR3" 2004-04-20 2014-11-19 54682 ENSG00000111261 OTTHUMG00000168541 uc001rai.2 AK001160 NM_018050 CCDS8648 Q9H8J5 12975309 MGI:1914979 RGD:1593458 MANSC1 +HGNC:40023 MANSC4 MANSC domain containing 4 protein-coding gene gene with protein product Approved 12p11.22 12p11.22 2011-05-05 2015-08-25 100287284 ENSG00000205693 OTTHUMG00000169216 uc010sjs.2 XM_011520542 CCDS53770 A6NHS7 MGI:3645619 RGD:1585055 MANSC4 +HGNC:6833 MAOA monoamine oxidase A protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 1986-01-01 2016-10-05 4128 ENSG00000189221 OTTHUMG00000021387 uc004dfy.5 NM_000240 "CCDS14260|CCDS59163" P21397 MGI:96915 RGD:61898 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAOA MAOA 309850 123133 objectId:2489 1.4.3.4 +HGNC:6834 MAOB monoamine oxidase B protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 1986-01-01 2016-10-05 4129 ENSG00000069535 OTTHUMG00000021388 uc004dfz.5 NM_000898 CCDS14261 P27338 MGI:96916 RGD:3041 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAOB|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/" MAOB 309860 objectId:2490 1.4.3.4 +HGNC:6835 MAP1A microtubule associated protein 1A protein-coding gene gene with protein product Approved 15q15.3 15q15.3 MAP1L 1992-07-09 2015-11-16 2015-11-16 4130 ENSG00000166963 OTTHUMG00000059756 uc001zrt.4 U38292 NM_002373 CCDS42031 P78559 "7806212|7629894" MGI:1306776 RGD:3042 MAP1A 600178 +HGNC:6836 MAP1B microtubule associated protein 1B protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "MAP5|PPP1R102" protein phosphatase 1, regulatory subunit 102 Protein phosphatase 1 regulatory subunits 694 1992-02-06 2015-11-16 2016-10-05 4131 ENSG00000131711 OTTHUMG00000100952 uc003kbw.5 L06237 NM_005909 CCDS4012 P46821 1881920 MGI:1306778 RGD:3043 MAP1B 157129 +HGNC:6838 MAP1LC3A microtubule associated protein 1 light chain 3 alpha protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "MAP1BLC3|MAP1ALC3|LC3|LC3A|ATG8E" Autophagy related 1022 2000-06-29 2015-11-16 2015-11-16 84557 ENSG00000101460 OTTHUMG00000032306 uc002xaq.3 NM_181509 "CCDS13237|CCDS13238" Q9H492 "8833088|17580304" MGI:1915661 RGD:735183 MAP1LC3A 601242 +HGNC:13352 MAP1LC3B microtubule associated protein 1 light chain 3 beta protein-coding gene gene with protein product Approved 16q24.2 16q24.2 ATG8F Autophagy related 1022 2002-09-16 2015-11-16 2015-11-16 81631 ENSG00000140941 OTTHUMG00000137654 uc002fjx.4 AF087871 NM_022818 CCDS10960 Q9GZQ8 MGI:1914693 RGD:621315 MAP1LC3B 609604 +HGNC:34390 MAP1LC3B2 microtubule associated protein 1 light chain 3 beta 2 protein-coding gene gene with protein product Approved 12q24.22 12q24.22 ATG8G Autophagy related 1022 2008-07-04 2015-11-16 2015-11-16 643246 ENSG00000258102 OTTHUMG00000171525 uc009zwk.2 NM_001085481 CCDS41841 A6NCE7 MAP1LC3B2 +HGNC:49783 MAP1LC3BP1 microtubule associated protein 1 light chain 3 beta pseudogene 1 pseudogene pseudogene Approved 9p22.1 09p22.1 2014-02-14 2015-11-16 2015-11-16 392288 ENSG00000231909 OTTHUMG00000019643 PGOHUM00000235981 +HGNC:13353 MAP1LC3C microtubule associated protein 1 light chain 3 gamma protein-coding gene gene with protein product Approved 1q43 01q43 ATG8J Autophagy related 1022 2005-05-19 2015-11-16 2015-11-16 440738 ENSG00000197769 OTTHUMG00000039865 uc001hzk.3 AF276659 NM_001004343 CCDS31074 Q9BXW4 12740394 MAP1LC3C 609605 +HGNC:31004 MAP1LC3P microtubule associated protein 1 light chain 3 pseudogene pseudogene pseudogene Approved 18q21.2 18q21.2 HsT312 2004-01-05 2015-11-16 2015-11-16 387615 ENSG00000267647 OTTHUMG00000179818 AY389342 NG_004859 PGOHUM00000235068 +HGNC:15715 MAP1S microtubule associated protein 1S protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "FLJ10669|MAP8" "C19orf5|VCY2IP1|BPY2IP1" "chromosome 19 open reading frame 5|VCY2 interacting protein 1|BPY2 interacting protein 1" 2001-06-04 2006-07-04 2015-11-16 2015-11-16 55201 ENSG00000130479 OTTHUMG00000183292 uc002nhe.2 BC067115 NM_018174 "CCDS32954|CCDS77262" Q66K74 "11827465|15528209|16297881|14627543" MGI:2443304 RGD:1308266 MAP1S 607573 +HGNC:6839 MAP2 microtubule associated protein 2 protein-coding gene gene with protein product Approved 2q34 02q34 "MAP2A|MAP2B|MAP2C" A-kinase anchoring proteins 396 1989-01-16 2015-11-16 2016-10-05 4133 ENSG00000078018 OTTHUMG00000132962 uc002vde.2 NM_001039538 "CCDS2384|CCDS2385|CCDS33369" P11137 "3103857|7479905" MGI:97175 RGD:3044 MAP2 157130 +HGNC:6840 MAP2K1 mitogen-activated protein kinase kinase 1 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "MEK1|MAPKK1" PRKMK1 Mitogen-activated protein kinase kinases 653 1993-11-05 2016-10-12 5604 ENSG00000169032 OTTHUMG00000133196 uc010bhq.4 L11284 XM_011521783 CCDS10216 Q02750 "9465908|8388392" MGI:1346866 RGD:70495 "The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=MAP2K1|LRG_725|http://www.lrg-sequence.org/LRG/LRG_725" MAP2K1 176872 123135 objectId:2062 2.7.12.2 +HGNC:6841 MAP2K1P1 mitogen-activated protein kinase kinase 1 pseudogene 1 pseudogene pseudogene Approved 8p12 08p12 2000-02-10 2013-01-23 29778 ENSG00000254013 OTTHUMG00000163815 AF157487 NG_001273 +HGNC:6842 MAP2K2 mitogen-activated protein kinase kinase 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MEK2 PRKMK2 Mitogen-activated protein kinase kinases 653 1993-11-05 2016-10-12 5605 ENSG00000126934 OTTHUMG00000134286 uc002lzk.4 L11285 XM_017026989 CCDS12120 P36507 8388392 MGI:1346867 RGD:61888 LRG_750|http://www.lrg-sequence.org/LRG/LRG_750 MAP2K2 601263 123140 objectId:2063 2.7.12.2 +HGNC:6843 MAP2K3 mitogen-activated protein kinase kinase 3 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "MEK3|MKK3|MAPKK3" "MAPK/ERK kinase 3|MAP kinase kinase 3|dual specificity mitogen activated protein kinase kinase 3" PRKMK3 Mitogen-activated protein kinase kinases 653 1997-11-11 2016-10-05 5606 ENSG00000034152 OTTHUMG00000134322 uc002gys.4 L36719 NM_145109 "CCDS11217|CCDS11218" P46734 9465908 MGI:1346868 RGD:1306620 MAP2K3 602315 objectId:2064 +HGNC:6844 MAP2K4 mitogen-activated protein kinase kinase 4 protein-coding gene gene with protein product Approved 17p12 17p12 "MEK4|JNKK1|PRKMK4|MKK4" SERK1 Mitogen-activated protein kinase kinases 653 1997-11-11 2015-02-03 6416 ENSG00000065559 OTTHUMG00000178267 uc002gnj.5 L36870 XR_934080 "CCDS11162|CCDS62095" P45985 7716521 MGI:1346869 RGD:1307040 MAP2K4 601335 objectId:2065 2.7.12.2 +HGNC:43837 MAP2K4P1 mitogen-activated protein kinase kinase 4 pseudogene 1 pseudogene pseudogene Approved Xq13.2 Xq13.2 2012-03-18 2013-08-05 139201 ENSG00000269904 OTTHUMG00000021833 NR_029423 PGOHUM00000241393 +HGNC:6845 MAP2K5 mitogen-activated protein kinase kinase 5 protein-coding gene gene with protein product Approved 15q23 15q23 "MEK5|MAPKK5|HsT17454" PRKMK5 Mitogen-activated protein kinase kinases 653 1997-11-11 2016-10-05 5607 ENSG00000137764 OTTHUMG00000133264 uc002aqu.4 U25265 NM_145162 "CCDS10224|CCDS42051|CCDS55970" Q13163 7759517 MGI:1346345 RGD:61890 MAP2K5 602520 objectId:2066 +HGNC:6846 MAP2K6 mitogen-activated protein kinase kinase 6 protein-coding gene gene with protein product Approved 17q24.3 17q24.3 "MEK6|MKK6|SAPKK3|MAPKK6" protein kinase, mitogen-activated, kinase 6 (MAP kinase kinase 6) PRKMK6 Mitogen-activated protein kinase kinases 653 1997-11-11 2016-01-15 5608 ENSG00000108984 OTTHUMG00000180311 uc002jij.4 U39064 NM_002758 "CCDS11686|CCDS82194" P52564 8621675 MGI:1346870 RGD:620666 MAP2K6 601254 objectId:2067 +HGNC:6847 MAP2K7 mitogen-activated protein kinase kinase 7 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "MKK7|Jnkk2" PRKMK7 Mitogen-activated protein kinase kinases 653 1998-04-28 2016-10-05 5609 ENSG00000076984 OTTHUMG00000137368 uc002mit.4 AF006689 NM_001297555 "CCDS42491|CCDS74277|CCDS74278" O14733 9312068 MGI:1346871 RGD:1560043 MAP2K7 603014 objectId:2068 2.7.12.2 +HGNC:6848 MAP3K1 mitogen-activated protein kinase kinase kinase 1 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "MEKK|MAPKKK1" MEKK1 "mitogen-activated protein kinase kinase kinase 1|mitogen-activated protein kinase kinase kinase 1, E3 ubiquitin protein ligase" "Zinc fingers SWIM-type|Mitogen-activated protein kinase kinase kinases" "90|654" 1997-11-14 2016-03-14 2016-03-14 4214 ENSG00000095015 OTTHUMG00000059486 uc003jqw.5 "U29671|AF042838" XM_042066 CCDS43318 Q13233 8597633 MGI:1346872 RGD:620966 MAP3K1 600982 260583 objectId:2069 +HGNC:6854 MAP3K2 mitogen-activated protein kinase kinase kinase 2 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 MEKK2B MAP/ERK kinase kinase 2 MEKK2 Mitogen-activated protein kinase kinase kinases 654 1999-07-01 2016-10-05 10746 ENSG00000169967 OTTHUMG00000153397 uc032obe.2 AF111105 NM_006609 CCDS46404 Q9Y2U5 "8621389|10085062" MGI:1346873 RGD:620967 MAP3K2 609487 objectId:2077 +HGNC:6855 MAP3K3 mitogen-activated protein kinase kinase kinase 3 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 MAPKKK3 "MAP/ERK kinase kinase 3|MAPK/ERK kinase kinase 3" MEKK3 Mitogen-activated protein kinase kinase kinases 654 1997-11-14 2016-01-15 4215 ENSG00000198909 OTTHUMG00000178905 uc002jbg.4 U78876 NM_002401 "CCDS32701|CCDS32702|CCDS82186" Q99759 9006902 MGI:1346874 RGD:1304575 MAP3K3 602539 objectId:2078 +HGNC:6856 MAP3K4 mitogen-activated protein kinase kinase kinase 4 protein-coding gene gene with protein product Approved 6q26 06q26 "MTK1|MAPKKK4|KIAA0213" MEKK4 Mitogen-activated protein kinase kinase kinases 654 1997-11-14 2015-08-25 4216 ENSG00000085511 OTTHUMG00000015968 uc003qtn.4 AF002715 XM_005266989 "CCDS34565|CCDS34566|CCDS75544" Q9Y6R4 9305639 MGI:1346875 RGD:1311192 MAP3K4 602425 objectId:2079 +HGNC:6857 MAP3K5 mitogen-activated protein kinase kinase kinase 5 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "MAPKKK5|ASK1" apoptosis signal regulating kinase 1 MEKK5 Mitogen-activated protein kinase kinase kinases 654 1997-11-14 2016-10-05 4217 ENSG00000197442 OTTHUMG00000015647 uc003qhc.4 U67156 XM_017010870 CCDS5179 Q99683 9465908 MGI:1346876 RGD:1306565 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=MAP3K5 MAP3K5 602448 objectId:2080 +HGNC:6858 MAP3K6 mitogen-activated protein kinase kinase kinase 6 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "MAPKKK6|ASK2|MEKK6" apoptosis signal regulating kinase 2 Mitogen-activated protein kinase kinase kinases 654 1999-09-07 2016-10-12 9064 ENSG00000142733 OTTHUMG00000004631 uc057dvi.1 AF100318 NM_004672 "CCDS299|CCDS72738" O95382 9875215 MGI:1855691 RGD:1304625 LRG_1086|http://www.lrg-sequence.org/LRG/LRG_1086 MAP3K6 604468 419381 objectId:2081 +HGNC:6859 MAP3K7 mitogen-activated protein kinase kinase kinase 7 protein-coding gene gene with protein product Approved 6q15 06q15 MEKK7 TGF-beta activated kinase 1 TAK1 Mitogen-activated protein kinase kinase kinases 654 1998-05-22 2016-04-20 6885 ENSG00000135341 OTTHUMG00000015217 uc003pnz.3 AB009356 NM_145331 "CCDS5027|CCDS5028|CCDS5029|CCDS5030" O43318 9466656 MGI:1346877 RGD:1309438 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=MAP3K7 MAP3K7 602614 objectId:2082 +HGNC:16457 MAP3K7CL MAP3K7 C-terminal like protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "TAKL|TAK1L|TAKL-1|TAKL-2|TAKL-4" C21orf7 chromosome 21 open reading frame 7 2001-08-24 2013-02-22 2013-02-22 2016-10-05 56911 ENSG00000156265 OTTHUMG00000078806 uc002yne.5 AF269161 NM_020152 "CCDS13584|CCDS68182|CCDS74775" P57077 MGI:2446584 RGD:1359474 611110 +HGNC:6860 MAP3K8 mitogen-activated protein kinase kinase kinase 8 protein-coding gene gene with protein product Approved 10p11.23 10p11.23 "Tpl-2|EST|c-COT|MEKK8" "COT|ESTF" Mitogen-activated protein kinase kinase kinases 654 1992-09-14 2016-10-05 1326 ENSG00000107968 OTTHUMG00000017889 uc001ivi.3 D14497 NM_005204 CCDS7166 P41279 "2072910|8479752" MGI:1346878 RGD:620969 MAP3K8 191195 objectId:2083 +HGNC:6861 MAP3K9 mitogen-activated protein kinase kinase kinase 9 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 "PRKE1|MEKK9" MLK1 Mitogen-activated protein kinase kinase kinases 654 1993-12-15 2015-09-03 4293 ENSG00000006432 OTTHUMG00000171249 uc001xml.5 AF251442 XM_011536788 "CCDS32112|CCDS61485|CCDS61488|CCDS73650" P80192 MGI:2449952 RGD:1562149 MAP3K9 600136 objectId:2084 +HGNC:6849 MAP3K10 mitogen-activated protein kinase kinase kinase 10 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "MST|MEKK10" "MKN28 kinase|mixed lineage kinase 2|MKN28 derived nonreceptor_type serine/threonine kinase" MLK2 Mitogen-activated protein kinase kinase kinases 654 1994-10-07 2014-11-19 4294 ENSG00000130758 OTTHUMG00000182591 uc002ona.3 X90846 NM_002446 CCDS12549 Q02779 "8536694|7731697" MGI:1346879 RGD:1308381 MAP3K10 600137 objectId:2070 2.7.11.1 +HGNC:6850 MAP3K11 mitogen-activated protein kinase kinase kinase 11 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "SPRK|MEKK11" "MLK3|PTK1" Mitogen-activated protein kinase kinase kinases 654 1992-10-02 2016-10-05 4296 ENSG00000173327 OTTHUMG00000166529 uc001oew.4 NM_002419 CCDS8107 Q16584 "9267807|8183572" MGI:1346880 RGD:1359261 MAP3K11 600050 objectId:2071 2.7.10.1 +HGNC:6851 MAP3K12 mitogen-activated protein kinase kinase kinase 12 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "MUK|DLK|ZPKP1|MEKK12" dual leucine zipper kinase DLK ZPK Mitogen-activated protein kinase kinase kinases 654 1994-09-29 2013-10-30 7786 ENSG00000139625 OTTHUMG00000169854 uc001sdm.3 U07358 NM_006301 "CCDS8860|CCDS55831" Q12852 8037767 MGI:1346881 RGD:3988 MAP3K12 600447 objectId:2072 +HGNC:6852 MAP3K13 mitogen-activated protein kinase kinase kinase 13 protein-coding gene gene with protein product Approved 3q27.2 03q27.2 "LZK|MEKK13" leucine zipper-bearing kinase Mitogen-activated protein kinase kinase kinases 654 1999-09-07 2016-10-05 9175 ENSG00000073803 OTTHUMG00000156673 uc010hyf.4 BC031677 NM_004721 "CCDS3270|CCDS56298" O43283 9353328 MGI:2444243 RGD:1561227 MAP3K13 604915 objectId:2073 +HGNC:6853 MAP3K14 mitogen-activated protein kinase kinase kinase 14 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "NIK|HSNIK|FTDCR1B|HS" serine/threonine protein-kinase Mitogen-activated protein kinase kinase kinases 654 2000-08-11 2014-06-16 9020 ENSG00000006062 OTTHUMG00000180364 uc032fjz.2 Y10256 NM_003954 CCDS74079 Q99558 9020361 MGI:1858204 RGD:1310487 MAP3K14 604655 457451 objectId:2074 2.7.11.25 +HGNC:44359 MAP3K14-AS1 MAP3K14 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 2012-08-17 2014-06-16 100133991 ENSG00000267278 OTTHUMG00000180362 uc032fjv.2 "AK311429|BC031942" NR_024434 +HGNC:31689 MAP3K15 mitogen-activated protein kinase kinase kinase 15 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 "bA723P2.3|FLJ16518|ASK3" Mitogen-activated protein kinase kinase kinases 654 2005-01-24 2015-09-03 389840 ENSG00000180815 OTTHUMG00000022724 uc022btq.2 AK131412 NM_001001671 CCDS35212 Q6ZN16 "20362554|23250415" MGI:2448588 RGD:1560603 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAP3K15 MAP3K15 300820 objectId:2075 +HGNC:26249 MAP3K19 mitogen-activated protein kinase kinase kinase 19 protein-coding gene gene with protein product Approved 2q21.3 02q21.3 "FLJ23074|RCK" YSK4 "Yeast Sps1/Ste20-related kinase 4 (S. cerevisiae)|yeast Sps1/Ste20-related kinase 4 (S. cerevisiae)|YSK4 Sps1/Ste20-related kinase homolog (S. cerevisiae)" Mitogen-activated protein kinase kinase kinases 654 2005-05-09 2012-10-16 2012-10-16 2015-06-30 80122 ENSG00000176601 OTTHUMG00000074083 uc002tue.2 AK026727 NM_025052 "CCDS2176|CCDS33293|CCDS63021|CCDS63020|CCDS63022" Q56UN5 12477932 MGI:1203481 RGD:1566400 objectId:2076 +HGNC:6862 MAP4 microtubule associated protein 4 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 1991-07-16 2015-11-16 2016-10-05 4134 ENSG00000047849 OTTHUMG00000156828 uc003csb.3 NM_002375 "CCDS33750|CCDS46818|CCDS46821" P27816 1905296 MGI:97178 RGD:1564359 MAP4 157132 +HGNC:6863 MAP4K1 mitogen-activated protein kinase kinase kinase kinase 1 protein-coding gene gene with protein product Approved 19q13.1-q13.4 19q13.1-q13.4 HPK1 hematopoietic progenitor kinase 1 Mitogen-activated protein kinase kinase kinase kinases 655 1999-09-07 2014-11-18 11184 ENSG00000104814 OTTHUMG00000180863 uc002oiy.3 U66464 NM_001042600 "CCDS42564|CCDS59385" Q92918 8824585 MGI:1346882 RGD:1305463 MAP4K1 601983 objectId:2085 2.7.11.1 +HGNC:6864 MAP4K2 mitogen-activated protein kinase kinase kinase kinase 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "GCK|BL44" RAB8IP Mitogen-activated protein kinase kinase kinase kinases 655 1997-08-18 2014-11-19 5871 ENSG00000168067 OTTHUMG00000045328 uc001obh.4 BC047865 NM_004579 "CCDS8082|CCDS81582" Q12851 7515885 MGI:1346883 RGD:1308199 MAP4K2 603166 objectId:2086 +HGNC:6865 MAP4K3 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 "GLK|MAPKKKK3" RAB8IPL1 Mitogen-activated protein kinase kinase kinase kinases 655 1998-10-14 2016-10-05 8491 ENSG00000011566 OTTHUMG00000102127 uc002rro.4 AF000145 NM_003618 "CCDS1803|CCDS58707" Q8IVH8 9275185 MGI:2154405 RGD:621280 MAP4K3 604921 objectId:2087 +HGNC:6866 MAP4K4 mitogen-activated protein kinase kinase kinase kinase 4 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "HGK|NIK|FLH21957" "HPK/GCK-like kinase|hepatocyte progenitor kinase-like/germinal center kinase-like kinase" Mitogen-activated protein kinase kinase kinase kinases 655 1999-09-07 2016-10-05 9448 ENSG00000071054 OTTHUMG00000155394 uc061mks.1 AF096300 NM_004834 "CCDS56130|CCDS74546|CCDS82487" O95819 "9890973|9734811|9135144" MGI:1349394 RGD:1305322 MAP4K4 604666 objectId:2088 +HGNC:6867 MAP4K5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "KHS1|GCKR|KHS" germinal center kinase-related Mitogen-activated protein kinase kinase kinase kinases 655 1999-09-07 2016-01-15 11183 ENSG00000012983 OTTHUMG00000170888 uc001wyb.4 U77129 NM_006575 Q9Y4K4 "9038372|8274451" MGI:1925503 RGD:1562028 MAP4K5 604923 objectId:2089 +HGNC:6868 MAP6 microtubule associated protein 6 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "KIAA1878|STOP|FLJ41346|MAP6-N" 1998-02-26 2015-11-16 2015-11-16 4135 ENSG00000171533 OTTHUMG00000165343 uc001owu.4 AK123340 NM_033063 "CCDS31641|CCDS44686" Q96JE9 "10516426|12231625" MGI:1201690 RGD:61804 MAP6 601783 +HGNC:25753 MAP6D1 MAP6 domain containing 1 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "FLJ12748|SL21" STOP-Like protein 21 kD 2005-12-22 2015-01-12 79929 ENSG00000180834 OTTHUMG00000156900 uc003fmc.3 BC006434 NM_024871 CCDS3247 Q9H9H5 25526643 MGI:3607784 RGD:1560102 MAP6D1 610593 +HGNC:6869 MAP7 microtubule associated protein 7 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 E-MAP-115 1999-01-22 2015-11-16 2016-10-05 9053 ENSG00000135525 OTTHUMG00000015646 uc003qgz.4 X73882 NM_003980 "CCDS5178|CCDS56452|CCDS56453|CCDS56454|CCDS56455|CCDS75527|CCDS75528|CCDS75529" Q14244 8408219 MGI:1328328 RGD:1308866 MAP7 604108 +HGNC:25514 MAP7D1 MAP7 domain containing 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "FLJ10350|FLJ39022" "PARCC1|RPRC1" "proline arginine rich coiled coil 1|arginine/proline rich coiled-coil 1" 2005-06-03 2007-02-08 2007-02-08 2014-11-18 55700 ENSG00000116871 OTTHUMG00000007714 uc001bzz.5 AK096341 NM_018067 "CCDS30673|CCDS65492|CCDS65493" Q3KQU3 10574461 MGI:2384297 RGD:1597986 MAP7D1 +HGNC:25899 MAP7D2 MAP7 domain containing 2 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 FLJ14503 2007-02-08 2014-11-18 256714 ENSG00000184368 OTTHUMG00000021228 uc004czr.3 BC089400 NM_152780 "CCDS14195|CCDS55384|CCDS55385|CCDS55386" Q96T17 12477932 MGI:1917474 RGD:1564852 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAP7D2 MAP7D2 +HGNC:25742 MAP7D3 MAP7 domain containing 3 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 FLJ12649 2007-02-08 2014-11-19 79649 ENSG00000129680 OTTHUMG00000022507 uc011mwc.4 AL832120 XM_017029843 "CCDS44004|CCDS55508|CCDS55509" Q8IWC1 24927501 MGI:2445051 RGD:1565514 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAP7D3 MAP7D3 300930 +HGNC:26118 MAP9 microtubule associated protein 9 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "ASAP|FLJ21159" aster-associated protein 2006-06-15 2015-11-16 2015-11-16 79884 ENSG00000164114 OTTHUMG00000133628 uc003ios.4 AK024812 NM_001039580 CCDS35493 Q49MG5 16049101 MGI:2442208 RGD:1560368 MAP9 610070 +HGNC:29265 MAP10 microtubule associated protein 10 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 MTR120 microtubule regulator 120 KDa KIAA1383 KIAA1383 2005-07-13 2013-02-12 2015-11-16 2015-11-16 54627 ENSG00000212916 OTTHUMG00000037819 uc001hvh.3 AB037804 NM_019090 CCDS44334 Q9P2G4 23264731 MGI:1921643 RGD:1308644 +HGNC:6871 MAPK1 mitogen-activated protein kinase 1 protein-coding gene gene with protein product Approved 22q11.22 22q11.22 "ERK|ERK2|p41mapk|MAPK2" "PRKM2|PRKM1" Mitogen-activated protein kinases 651 1993-11-05 2016-10-12 5594 ENSG00000100030 OTTHUMG00000030508 uc002zvn.4 M84489 NM_138957 CCDS13795 P28482 MGI:1346858 RGD:70500 LRG_786|http://www.lrg-sequence.org/LRG/LRG_786 MAPK1 176948 159910 objectId:1495 2.7.11.1 +HGNC:19840 MAPK1IP1L mitogen-activated protein kinase 1 interacting protein 1 like protein-coding gene gene with protein product Approved 14q22.3 14q22.3 C14orf32 chromosome 14 open reading frame 32 2002-11-27 2008-01-16 2016-07-01 2016-07-01 93487 ENSG00000168175 OTTHUMG00000171029 uc001xbq.2 AK025580 NM_144578 CCDS32085 Q8NDC0 12011110 MGI:2444022 RGD:1311455 MAPK1IP1L +HGNC:6877 MAPK3 mitogen-activated protein kinase 3 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "ERK1|p44mapk|p44erk1" PRKM3 Mitogen-activated protein kinases 651 1993-11-05 2015-09-03 5595 ENSG00000102882 OTTHUMG00000132149 uc002dws.4 M84490 NM_001109891 "CCDS10672|CCDS42148|CCDS42149" P27361 9628824 MGI:1346859 RGD:3046 MAPK3 601795 objectId:1494 2.7.11.1 +HGNC:6878 MAPK4 mitogen-activated protein kinase 4 protein-coding gene gene with protein product Approved 18q21.1-q21.2 18q21.1-q21.2 "Erk3-related|Erk4" PRKM4 Mitogen-activated protein kinases 651 1993-11-08 2016-10-11 5596 ENSG00000141639 OTTHUMG00000179853 uc002lev.4 X59727 NM_002747 "CCDS42437|CCDS77188|CCDS77189" P31152 8290275 MGI:2444559 RGD:3047 MAPK4 176949 objectId:2091 +HGNC:6879 MAPK6 mitogen-activated protein kinase 6 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "ERK3|p97MAPK|HsT17250" PRKM6 Mitogen-activated protein kinases 651 1998-04-28 2016-10-05 5597 ENSG00000069956 OTTHUMG00000131891 uc002abp.4 L77964 NM_002748 CCDS10147 Q16659 8875998 MGI:1354946 RGD:62087 MAPK6 602904 objectId:2092 +HGNC:18980 MAPK6PS1 mitogen-activated protein kinase 6 pseudogene 1 pseudogene pseudogene Approved 8q11.23 08q11.23 Erk3ps1 2004-04-16 2014-11-19 317686 NG_002454 +HGNC:16756 MAPK6PS2 mitogen-activated protein kinase 6 pseudogene 2 pseudogene pseudogene Approved 21q21.1 21q21.1 2003-10-01 2016-10-05 254664 ENSG00000223488 OTTHUMG00000078251 NG_002448 PGOHUM00000239050 +HGNC:18977 MAPK6PS3 mitogen-activated protein kinase 6 pseudogene 3 pseudogene pseudogene Approved 13q14.11 13q14.11 2004-04-16 2016-10-05 317684 ENSG00000237263 OTTHUMG00000016800 NG_002453 12504858 PGOHUM00000248385 +HGNC:18456 MAPK6PS4 mitogen-activated protein kinase 6 pseudogene 4 pseudogene pseudogene Approved 8q11.21 08q11.21 Erk3ps4 2004-04-16 2012-11-02 286065 ENSG00000215179 OTTHUMG00000164138 NG_002451 +HGNC:18979 MAPK6PS5 mitogen-activated protein kinase 6 pseudogene 5 pseudogene pseudogene Approved 8q23 08q23 2004-04-16 2012-11-02 286156 NG_002452 +HGNC:18978 MAPK6PS6 mitogen-activated protein kinase 6 pseudogene 6 pseudogene pseudogene Approved 10q11.23 10q11.23 2004-04-16 2016-08-17 282967 ENSG00000226389 OTTHUMG00000018197 NG_002449 PGOHUM00000290154 +HGNC:6880 MAPK7 mitogen-activated protein kinase 7 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "BMK1|ERK5" "BMK1 kinase|extracellular-signal-regulated kinase 5" PRKM7 Mitogen-activated protein kinases 651 1998-04-28 2014-11-19 5598 ENSG00000166484 OTTHUMG00000059587 uc002gvn.4 U25278 NM_139033 "CCDS11206|CCDS11207" Q13164 "10072598|7759517" MGI:1346347 RGD:621505 MAPK7 602521 objectId:2093 2.7.11.24 +HGNC:6881 MAPK8 mitogen-activated protein kinase 8 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "JNK|JNK1|SAPK1" JUN N-terminal kinase PRKM8 Mitogen-activated protein kinases 651 1998-04-28 2016-10-05 5599 ENSG00000107643 OTTHUMG00000018172 uc001jgn.5 L26318 NM_001323302 "CCDS7223|CCDS7224|CCDS7225|CCDS7226|CCDS60527" P45983 "8137421|8654373" MGI:1346861 RGD:621506 MAPK8 601158 objectId:1496 2.7.11.1 +HGNC:6882 MAPK8IP1 mitogen-activated protein kinase 8 interacting protein 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "IB1|JIP-1|JIP1" PRKM8IP 1999-06-11 2015-08-25 9479 ENSG00000121653 OTTHUMG00000134324 uc001nbr.4 NM_005456 CCDS7916 Q9UQF2 "9235893|9442013" MGI:1309464 RGD:70937 MAPK8IP1 604641 +HGNC:6883 MAPK8IP2 mitogen-activated protein kinase 8 interacting protein 2 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "IB2|JIP2" "islet-brain 2|JNK-interacting protein 2" PRKM8IPL PRKM8 interacting protein-like 1999-10-12 2014-11-18 23542 ENSG00000008735 OTTHUMG00000150181 uc032qrw.2 AL021708 NM_012324 CCDS74886 Q13387 10490659 MGI:1926555 RGD:1309727 MAPK8IP2 607755 +HGNC:6884 MAPK8IP3 mitogen-activated protein kinase 8 interacting protein 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "KIAA1066|JSAP1|JIP3|syd" homolog of Drosophila Sunday driver 2 2000-08-22 2014-11-19 23162 ENSG00000138834 OTTHUMG00000128637 uc002cmk.4 AB028989 NM_001040439 "CCDS10442|CCDS45379|CCDS81929" Q9UPT6 "10523642|10629060" MGI:1353598 RGD:1563691 MAPK8IP3 605431 +HGNC:6885 MAPK8IPP mitogen-activated protein kinase 8 interacting protein, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 PRKM8IPP 1999-06-11 2014-11-19 644253 NG_022469 9933567 PGOHUM00000237414 +HGNC:6886 MAPK9 mitogen-activated protein kinase 9 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "JNK2|p54a|SAPK" Jun kinase PRKM9 Mitogen-activated protein kinases 651 1998-04-28 2016-10-05 5601 ENSG00000050748 OTTHUMG00000130934 uc010jlc.4 U09759 XM_006714891 "CCDS4453|CCDS4454|CCDS43409|CCDS43410|CCDS47356|CCDS78103" P45984 8001819 MGI:1346862 RGD:628847 MAPK9 602896 objectId:1497 2.7.11.1 +HGNC:6872 MAPK10 mitogen-activated protein kinase 10 protein-coding gene gene with protein product Approved 4q21.3 04q21.3 "JNK3|p493F12|p54bSAPK" PRKM10 Mitogen-activated protein kinases 651 1998-04-28 2016-10-05 5602 ENSG00000109339 OTTHUMG00000130604 uc003hpr.4 U07620 XM_005263129 "CCDS3612|CCDS34026|CCDS43247|CCDS82937" P53779 "8654373|12436199" MGI:1346863 RGD:3663 MAPK10 602897 248276 objectId:1498 2.7.11.1 +HGNC:6873 MAPK11 mitogen-activated protein kinase 11 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "p38-2|p38Beta|SAPK2" PRKM11 Mitogen-activated protein kinases 651 1998-04-28 2015-08-25 5600 ENSG00000185386 OTTHUMG00000150226 uc003bkr.4 Y14440 NM_002751 CCDS14090 Q15759 9218798 MGI:1338024 RGD:1309340 MAPK11 602898 objectId:1500 2.7.11.1 +HGNC:6874 MAPK12 mitogen-activated protein kinase 12 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "ERK6|PRKM12|p38gamma|SAPK-3" SAPK3 Mitogen-activated protein kinases 651 1998-04-28 2016-10-05 6300 ENSG00000188130 OTTHUMG00000030145 uc003bkm.2 U66243 NM_002969 "CCDS14089|CCDS77688" P53778 9169156 MGI:1353438 RGD:70975 MAPK12 602399 objectId:1501 2.7.11.1 +HGNC:6875 MAPK13 mitogen-activated protein kinase 13 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "SAPK4|p38delta" PRKM13 Mitogen-activated protein kinases 651 1998-04-28 2016-10-05 5603 ENSG00000156711 OTTHUMG00000014587 uc003ols.5 Y10488 NM_002754 CCDS4818 O15264 "9295308|9218798" MGI:1346864 RGD:3045 MAPK13 602899 objectId:1502 2.7.11.1 +HGNC:6876 MAPK14 mitogen-activated protein kinase 14 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "PRKM14|p38|Mxi2|PRKM15" p38 MAP kinase "CSPB1|CSBP1|CSBP2" Mitogen-activated protein kinases 651 1995-01-24 2016-10-05 1432 ENSG00000112062 OTTHUMG00000159806 uc003olp.4 L35263 NM_001315 "CCDS4815|CCDS4816|CCDS4817" Q16539 7997261 MGI:1346865 RGD:70496 MAPK14 600289 objectId:1499 +HGNC:24667 MAPK15 mitogen-activated protein kinase 15 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "ERK8|ERK7" extracellular signal regulated kinase 8 Mitogen-activated protein kinases 651 2005-04-05 2014-11-18 225689 ENSG00000181085 OTTHUMG00000146450 uc003yzj.4 AY065978 NM_139021 CCDS6409 Q8TD08 11875070 MGI:2652894 RGD:628675 MAPK15 objectId:2090 +HGNC:18752 MAPKAP1 mitogen-activated protein kinase associated protein 1 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "MGC2745|SIN1|MIP1" stress-activated protein kinase-interacting 1 MTOR complex 2 1333 2002-07-19 2016-10-05 79109 ENSG00000119487 OTTHUMG00000020683 uc004bpv.3 M37191 XM_011519006 "CCDS6864|CCDS35139|CCDS35140|CCDS35141|CCDS48020" Q9BPZ7 15363842 MGI:2444554 RGD:1305363 MAPKAP1 610558 +HGNC:6887 MAPKAPK2 mitogen-activated protein kinase-activated protein kinase 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 Mitogen-activated protein kinase-activated protein kinases 1156 1999-03-26 2016-10-05 9261 ENSG00000162889 OTTHUMG00000036342 uc001hem.3 U12779 NM_004759 "CCDS1466|CCDS31001" P49137 "8179591|8280084" MGI:109298 RGD:631362 MAPKAPK2 602006 objectId:2094 +HGNC:6888 MAPKAPK3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "3pK|MAPKAP3|3PK" Mitogen-activated protein kinase-activated protein kinases 1156 1999-03-26 2016-10-05 7867 ENSG00000114738 OTTHUMG00000156850 uc003day.3 U43784 NM_004635 CCDS2832 Q16644 "8626550|8622688" MGI:2143163 RGD:1304980 MAPKAPK3 602130 objectId:2095 +HGNC:6889 MAPKAPK5 mitogen-activated protein kinase-activated protein kinase 5 protein-coding gene gene with protein product Approved 12q24.12-q24.13 12q24.12-q24.13 PRAK Mitogen-activated protein kinase-activated protein kinases 1156 1999-03-26 2016-10-11 8550 ENSG00000089022 OTTHUMG00000169605 uc001tta.5 AF032437 NM_139078 "CCDS44975|CCDS44976" Q8IW41 9628874 MGI:1333110 RGD:1564113 MAPKAPK5 606723 objectId:2096 +HGNC:24091 MAPKAPK5-AS1 MAPKAPK5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q24.12 12q24.12 FLJ39616 C12orf47 "chromosome 12 open reading frame 47|MAPKAPK5 antisense RNA 1 (non-protein coding)" 2006-01-23 2012-05-30 2012-08-15 2012-10-12 51275 ENSG00000234608 OTTHUMG00000141273 uc001tsy.3 NR_015404 Q8N8E1 12477932 +HGNC:45246 MAPKAPK5P1 mitogen-activated protein kinase-activated protein kinase 5 pseudogene 1 pseudogene pseudogene Approved 10q25.1 10q25.1 2013-03-11 2013-03-11 100533849 ENSG00000224498 OTTHUMG00000019023 NG_028758 PGOHUM00000238913 +HGNC:29536 MAPKBP1 mitogen-activated protein kinase binding protein 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 KIAA0596 mitogen activated protein kinase binding protein 1 WD repeat domain containing 362 2005-07-21 2008-01-30 2014-11-19 23005 ENSG00000137802 OTTHUMG00000160227 uc001zoj.4 AB011168 NM_014994 "CCDS32201|CCDS45239|CCDS58359" O60336 "9628581|10471813" MGI:1347004 RGD:1307578 MAPKBP1 616786 +HGNC:6890 MAPRE1 microtubule associated protein RP/EB family member 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 EB1 adenomatous polyposis coli-binding protein EB1 1999-12-14 2015-11-16 2016-10-05 22919 ENSG00000101367 OTTHUMG00000032228 uc002wyh.3 U24166 NM_012325 CCDS13208 Q15691 "7606712|9724749|11470413" MGI:891995 RGD:621781 MAPRE1 603108 +HGNC:29624 MAPRE1P1 MAPRE1 pseudogene 1 pseudogene pseudogene Approved 8q24.3 08q24.3 MAPRE1P MAPRE1 pseudogene 2009-06-17 2010-02-16 2010-02-16 2014-11-19 80327 ENSG00000253915 OTTHUMG00000164123 AF288786 NG_002682 11161807 PGOHUM00000249512 +HGNC:37761 MAPRE1P2 MAPRE1 pseudogene 2 pseudogene pseudogene Approved 4p15.1 04p15.1 2010-02-16 2014-11-19 642305 NG_028945 PGOHUM00000245494 +HGNC:37762 MAPRE1P3 MAPRE1 pseudogene 3 pseudogene pseudogene Approved 2q24.3 02q24.3 2010-02-16 2014-11-19 100422229 ENSG00000233204 OTTHUMG00000153998 NG_031906 PGOHUM00000241008 +HGNC:6891 MAPRE2 microtubule associated protein RP/EB family member 2 protein-coding gene gene with protein product Approved 18q12.1-q12.2 18q12.1-q12.2 "RP1|EB1|EB2" APC-binding protein EB1 1999-12-14 2015-11-16 2016-10-11 10982 ENSG00000166974 OTTHUMG00000132551 uc002kyg.5 X94232 NM_014268 "CCDS11910|CCDS45850|CCDS45851|CCDS58619" Q15555 "9233623|12475954" MGI:106271 RGD:1590736 MAPRE2 605789 448342 +HGNC:6892 MAPRE3 microtubule associated protein RP/EB family member 3 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "RP3|EB3" 1999-12-14 2015-11-16 2016-10-05 22924 ENSG00000084764 OTTHUMG00000097067 uc002rhw.4 Y11174 NM_012326 CCDS1731 Q9UPY8 9233623 MGI:2140967 RGD:1359297 MAPRE3 605788 +HGNC:6893 MAPT microtubule associated protein tau protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "MTBT1|tau|PPND|FTDP-17|TAU|MSTD|MTBT2|FLJ31424|MGC138549|PPP1R103" "G protein beta1/gamma2 subunit-interacting factor 1|microtubule-associated protein tau, isoform 4|protein phosphatase 1, regulatory subunit 103" "DDPAC|MAPTL" Protein phosphatase 1 regulatory subunits 694 2001-06-22 2015-11-16 2016-10-12 4137 ENSG00000186868 OTTHUMG00000168833 uc010dau.4 J03778 NM_016835 "CCDS11499|CCDS11500|CCDS11501|CCDS11502|CCDS45715|CCDS45716|CCDS56033" P10636 "7936241|3131773" MGI:97180 RGD:69329 "Alzheimer Disease & Frontotemporal Dementia Mutation Database|http://www.molgen.ua.ac.be/FTDMutations/|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_660|http://www.lrg-sequence.org/LRG/LRG_660" MAPT 157140 123144 +HGNC:43738 MAPT-AS1 MAPT antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 MAPT antisense RNA 1 (non-protein coding) 2012-02-17 2012-08-15 2016-10-03 100128977 ENSG00000264589 OTTHUMG00000178246 uc284ojc.1 NR_024559 27336847 +HGNC:43741 MAPT-IT1 MAPT intronic transcript 1 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 MAPT intronic transcript 1 (non-protein coding) 2012-02-20 2015-02-25 2015-02-25 100130148 ENSG00000279685 OTTHUMG00000177993 uc002ijw.5 NR_024560 +HGNC:26189 MARC1 mitochondrial amidoxime reducing component 1 protein-coding gene gene with protein product Approved 1q41 01q41 FLJ22390 MOSC1 MOCO sulphurase C-terminal domain containing 1 2005-06-03 2011-11-02 2011-11-02 2015-07-16 64757 ENSG00000186205 OTTHUMG00000037353 uc001hms.4 AK026043 NM_022746 CCDS1526 Q5VT66 11886751 MGI:1913362 RGD:1592219 614126 +HGNC:26064 MARC2 mitochondrial amidoxime reducing component 2 protein-coding gene gene with protein product Approved 1q41 01q41 FLJ20605 MOSC2 MOCO sulphurase C-terminal domain containing 2 2005-06-03 2011-11-02 2011-11-02 2015-07-16 54996 ENSG00000117791 OTTHUMG00000037354 uc001hmq.4 NM_017898 "CCDS1525|CCDS81425" Q969Z3 11886751 MGI:1914497 RGD:621257 MARC2 614127 +HGNC:26077 MARCH1 membrane associated ring-CH-type finger 1 protein-coding gene gene with protein product Approved 4q32.2 04q32.2 "FLJ20668|MARCH-I|RNF171" "membrane-associated ring finger (C3HC4) 1|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2005-01-26 2015-11-26 2015-11-26 55016 ENSG00000145416 OTTHUMG00000161204 uc003iqs.3 AK000675 NM_017923 "CCDS3806|CCDS54814" Q8TCQ1 14722266 MGI:1920175 RGD:1305148 MARCH1 613331 +HGNC:28038 MARCH2 membrane associated ring-CH-type finger 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "HSPC240|MARCH-II|RNF172" "membrane-associated ring finger (C3HC4) 2|membrane-associated ring finger (C3HC4) 2, E3 ubiquitin protein ligase" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2005-01-26 2015-11-26 2015-11-26 51257 ENSG00000099785 OTTHUMG00000182282 uc002mjw.4 AF151074 NM_016496 "CCDS12202|CCDS32894" Q9P0N8 "11042152|14722266" MGI:1925915 RGD:1306395 MARCH2 613332 +HGNC:28728 MARCH3 membrane associated ring-CH-type finger 3 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 "MGC48332|MARCH-III|RNF173" "membrane-associated ring finger (C3HC4) 3|membrane-associated ring finger (C3HC4) 3, E3 ubiquitin protein ligase" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2005-01-26 2015-11-26 2015-11-26 115123 ENSG00000173926 OTTHUMG00000128968 uc003kuf.4 AF055007 NM_178450 CCDS4141 Q86UD3 "14722266|8619474" MGI:2443667 RGD:1359308 MARCH3 613333 +HGNC:29269 MARCH4 membrane associated ring-CH-type finger 4 protein-coding gene gene with protein product Approved 2q35 02q35 "KIAA1399|MARCH-IV|RNF174" "membrane-associated ring finger (C3HC4) 4|membrane-associated ring finger (C3HC4) 4, E3 ubiquitin protein ligase" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2005-01-26 2015-11-26 2015-11-26 57574 ENSG00000144583 OTTHUMG00000154824 uc002vgb.4 AB037820 NM_020814 CCDS33376 Q9P2E8 "10718198|14722266" MGI:2683550 RGD:1590797 MARCH4 608208 +HGNC:26025 MARCH5 membrane associated ring-CH-type finger 5 protein-coding gene gene with protein product Approved 10q23.32-q23.33 10q23.32-q23.33 "FLJ20445|MARCH-V" RNF153 "ring finger protein 153|membrane-associated ring finger (C3HC4) 5" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2004-05-27 2005-01-27 2015-11-26 2016-10-11 54708 ENSG00000198060 OTTHUMG00000018757 uc001khx.1 BC015480 NM_017824 CCDS7420 Q9NX47 14722266 MGI:1915207 RGD:1305617 MARCH5 610637 +HGNC:30550 MARCH6 membrane associated ring-CH-type finger 6 protein-coding gene gene with protein product Approved 5p15.2 05p15.2 "TEB4|MARCH-VI|RNF176" "membrane-associated ring finger (C3HC4) 6|membrane-associated ring finger (C3HC4) 6, E3 ubiquitin protein ligase" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2005-01-26 2015-11-26 2015-11-26 10299 ENSG00000145495 OTTHUMG00000162027 uc003jet.3 AB011169 NM_005885 "CCDS34135|CCDS59487|CCDS59488" O60337 14722266 MGI:2442773 RGD:1565757 MARCH6 613297 +HGNC:17393 MARCH7 membrane associated ring-CH-type finger 7 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "MARCH-VII|RNF177" AXOT "axotrophin|membrane-associated ring finger (C3HC4) 7|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2001-12-17 2005-01-27 2015-11-26 2015-11-26 64844 ENSG00000136536 OTTHUMG00000132029 uc002uax.5 AK022973 NM_022826 "CCDS2210|CCDS63038|CCDS63039" Q9H992 14722266 MGI:1931053 RGD:1308993 MARCH7 613334 +HGNC:23356 MARCH8 membrane associated ring-CH-type finger 8 protein-coding gene gene with protein product Approved 10q11.21-q11.22 10q11.21-q11.22 "c-MIR|CMIR|MARCH-VIII|RNF178" MIR "c-mir, cellular modulator of immune recognition|membrane-associated ring finger (C3HC4) 8|membrane-associated ring finger (C3HC4) 8, E3 ubiquitin protein ligase" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2003-11-12 2005-01-27 2015-11-26 2016-10-11 220972 ENSG00000165406 OTTHUMG00000019345 uc001jck.3 AL833316 NM_145021 "CCDS7213|CCDS60519" Q5T0T0 "12582153|14722266" MGI:1919029 RGD:1309339 MARCH8 613335 +HGNC:25139 MARCH9 membrane associated ring-CH-type finger 9 protein-coding gene gene with protein product Approved 12q14.1 12q14.1 "RNF179|FLJ36578" membrane-associated ring finger (C3HC4) 9 "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2005-01-26 2015-11-26 2015-11-26 92979 ENSG00000139266 OTTHUMG00000170456 uc001spx.3 BC009489 NM_138396 CCDS31847 Q86YJ5 14722266 MGI:2446144 RGD:1590688 MARCH9 613336 +HGNC:26655 MARCH10 membrane associated ring-CH-type finger 10 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "FLJ35757|MARCH-X" RNF190 "ring finger protein 190|membrane-associated ring finger (C3HC4) 10|membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase" "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2005-08-19 2007-08-20 2015-11-26 2015-11-26 162333 ENSG00000173838 OTTHUMG00000179192 uc002jag.6 AK093076 NM_152598 "CCDS11635|CCDS74122|CCDS74123" Q8NA82 17604280 MGI:2443469 RGD:1311692 MARCH10 613337 +HGNC:33609 MARCH11 membrane associated ring-CH-type finger 11 protein-coding gene gene with protein product Approved 5p15.1 05p15.1 MARCH-XI membrane-associated ring finger (C3HC4) 11 "Ring finger proteins|Membrane associated ring-CH-type fingers" "58|60" 2007-08-20 2015-11-26 2015-11-26 441061 ENSG00000183654 OTTHUMG00000161789 uc003jfo.3 BC150513 NM_001102562 CCDS47192 A6NNE9 17604280 MGI:3608327 RGD:1559945 MARCH11 613338 +HGNC:6759 MARCKS myristoylated alanine rich protein kinase C substrate protein-coding gene gene with protein product Approved 6q21 06q21 "PKCSL|80K-L" MACS myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L) 1990-01-05 2001-12-20 2016-01-29 2016-06-03 4082 ENSG00000277443 OTTHUMG00000188327 uc032xir.2 M68956 NM_002356 CCDS5101 P29966 "1560845|8420923" MGI:96907 RGD:3028 MARCKS 177061 +HGNC:7142 MARCKSL1 MARCKS like 1 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "F52|MacMARCKS|MLP1" MLP MARCKS-like protein 1996-04-12 2004-11-17 2016-06-03 2016-06-03 65108 ENSG00000175130 OTTHUMG00000007589 uc001bvd.5 AF031640 NM_023009 CCDS361 P49006 9598313 MGI:97143 RGD:621197 MARCKSL1 602940 +HGNC:45239 MARCKSL1P1 MARCKS like 1 pseudogene 1 pseudogene pseudogene Approved 10q24.33 10q24.33 2013-03-11 2016-06-03 2016-06-03 100913183 ENSG00000213277 OTTHUMG00000018978 NG_032812 PGOHUM00000238908 +HGNC:45240 MARCKSL1P2 MARCKS like 1 pseudogene 2 pseudogene pseudogene Approved 6q24.1 06q24.1 2013-03-11 2016-06-03 2016-10-05 100913182 ENSG00000215878 OTTHUMG00000015672 NG_032810 PGOHUM00000243394 +HGNC:6760 MARCKSP1 myristoylated alanine rich protein kinase C substrate pseudogene 1 pseudogene pseudogene Approved 21q21.3 21q21.3 MACSL1 myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L)-like 1 1991-09-13 2010-10-15 2016-06-03 2016-06-03 4083 NG_007487 1427823 +HGNC:6895 MARCO macrophage receptor with collagenous structure protein-coding gene gene with protein product Approved 2q14.2 02q14.2 SCARA2 scavenger receptor class A, member 2 Scavenger receptors 1253 1998-11-26 2014-11-18 8685 ENSG00000019169 OTTHUMG00000131400 uc002tln.2 AF035819 NM_006770 CCDS2124 Q9UEW3 "9468508|7867067|10331948" MGI:1309998 RGD:1589662 MARCO 604870 +HGNC:6896 MARK1 microtubule affinity regulating kinase 1 protein-coding gene gene with protein product Approved 1q41 01q41 "MARK|PAR-1C" MAP/microtubule affinity-regulating kinase 1 1997-10-27 2016-02-10 2016-02-10 4139 ENSG00000116141 OTTHUMG00000037351 uc001hmn.6 AF154845 XM_011509561 "CCDS31029|CCDS65789|CCDS73033|CCDS73034" Q9P0L2 9108484 MGI:2664902 RGD:619882 MARK1 606511 objectId:2097 +HGNC:3332 MARK2 microtubule affinity regulating kinase 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "PAR-1|Par1b|PAR-1B" "ELKL motif kinase 1|serine/threonine kinase|protein-serine/threonine kinase|Ser/Thr protein kinase PAR-1B" EMK1 "ELKL motif kinase|MAP/microtubule affinity-regulating kinase 2" 1994-12-08 2002-08-01 2016-02-10 2016-04-25 2011 ENSG00000072518 OTTHUMG00000160504 uc058crx.1 BC008771 NM_017490 "CCDS41665|CCDS53649|CCDS53650|CCDS53651|CCDS8051" Q7KZI7 "9730619|10516437" MGI:99638 RGD:708483 MARK2 600526 objectId:2098 +HGNC:39792 MARK2P1 microtubule affinity regulating kinase 2 pseudogene 1 pseudogene pseudogene Approved 3p25.3 03p25.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 1 2011-03-29 2016-02-10 2016-02-10 100421501 NG_025672 PGOHUM00000237930 +HGNC:39793 MARK2P2 microtubule affinity regulating kinase 2 pseudogene 2 pseudogene pseudogene Approved 3p25.3 03p25.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 2 2011-03-29 2016-02-10 2016-02-10 100421502 NG_025674 PGOHUM00000237933 +HGNC:39794 MARK2P3 microtubule affinity regulating kinase 2 pseudogene 3 pseudogene pseudogene Approved 3q21.3 03q21.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 3 2011-03-29 2016-02-10 2016-02-10 100421507 NG_025740 PGOHUM00000238178 +HGNC:39795 MARK2P4 microtubule affinity regulating kinase 2 pseudogene 4 pseudogene pseudogene Approved 4q34.2 04q34.2 MAP/microtubule affinity-regulating kinase 2 pseudogene 4 2011-03-29 2016-02-10 2016-02-10 100421496 ENSG00000250372 OTTHUMG00000160790 NG_025187 PGOHUM00000245776 +HGNC:39796 MARK2P5 microtubule affinity regulating kinase 2 pseudogene 5 pseudogene pseudogene Approved 5p15.1 05p15.1 MAP/microtubule affinity-regulating kinase 2 pseudogene 5 2011-03-29 2016-02-10 2016-02-10 100421485 ENSG00000248834 OTTHUMG00000161794 NG_024655 +HGNC:39797 MARK2P6 microtubule affinity regulating kinase 2 pseudogene 6 pseudogene pseudogene Approved 3q21.3 03q21.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 6 2011-03-29 2016-02-10 2016-02-10 100421500 ENSG00000242062 OTTHUMG00000159807 NG_025623 PGOHUM00000237762 +HGNC:39798 MARK2P7 microtubule affinity regulating kinase 2 pseudogene 7 pseudogene pseudogene Approved 7p14.2 07p14.2 MAP/microtubule affinity-regulating kinase 2 pseudogene 7 2011-03-29 2016-02-10 2016-02-10 100421531 NG_026553 PGOHUM00000233183 +HGNC:39799 MARK2P8 microtubule affinity regulating kinase 2 pseudogene 8 pseudogene pseudogene Approved 3q21.3 03q21.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 8 2011-03-29 2016-02-10 2016-02-10 100421498 ENSG00000239503 OTTHUMG00000159814 NG_025620 PGOHUM00000237757 +HGNC:39800 MARK2P9 microtubule affinity regulating kinase 2 pseudogene 9 pseudogene pseudogene Approved 10q23.33 10q23.33 MAP/microtubule affinity-regulating kinase 2 pseudogene 9 2011-03-29 2016-02-10 2016-02-10 100507674 ENSG00000232709 OTTHUMG00000018758 NR_038243 PGOHUM00000238891 +HGNC:39801 MARK2P10 microtubule affinity regulating kinase 2 pseudogene 10 pseudogene pseudogene Approved 7q21.3 07q21.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 10 2011-03-29 2016-02-10 2016-02-10 402679 ENSG00000227284 OTTHUMG00000154199 NG_023195 PGOHUM00000233482 +HGNC:39802 MARK2P11 microtubule affinity regulating kinase 2 pseudogene 11 pseudogene pseudogene Approved 5q33.3 05q33.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 11 2011-03-29 2016-02-10 2016-02-10 100421484 ENSG00000253743 OTTHUMG00000163529 NG_024636 PGOHUM00000235439 +HGNC:39803 MARK2P12 microtubule affinity regulating kinase 2 pseudogene 12 pseudogene pseudogene Approved 13q22.1 13q22.1 MAP/microtubule affinity-regulating kinase 2 pseudogene 12 2011-03-29 2016-02-10 2016-02-10 100421565 ENSG00000229708 OTTHUMG00000017075 NG_024868 PGOHUM00000248437 +HGNC:39804 MARK2P13 microtubule affinity regulating kinase 2 pseudogene 13 pseudogene pseudogene Approved 7p14.2 07p14.2 MAP/microtubule affinity-regulating kinase 2 pseudogene 13 2011-03-29 2016-02-10 2016-02-10 100631260 ENSG00000228815 OTTHUMG00000155059 NG_029259 PGOHUM00000232652 +HGNC:44495 MARK2P14 microtubule affinity regulating kinase 2 pseudogene 14 pseudogene pseudogene Approved 3p25.2 03p25.2 MAP/microtubule affinity-regulating kinase 2 pseudogene 14 2012-11-12 2016-02-10 2016-02-10 100631261 ENSG00000231897 OTTHUMG00000155297 NG_029270 PGOHUM00000237938 +HGNC:45119 MARK2P15 microtubule affinity regulating kinase 2 pseudogene 15 pseudogene pseudogene Approved 10q23.1 10q23.1 MAP/microtubule affinity-regulating kinase 2 pseudogene 15 2013-02-15 2016-02-10 2016-02-10 100533794 ENSG00000234931 OTTHUMG00000018627 NG_028751 PGOHUM00000264182 +HGNC:45171 MARK2P16 microtubule affinity regulating kinase 2 pseudogene 16 pseudogene pseudogene Approved 10q23.31 10q23.31 MAP/microtubule affinity-regulating kinase 2 pseudogene 16 2013-03-01 2016-02-10 2016-08-16 100533795 ENSG00000270670 OTTHUMG00000184689 NG_028752 PGOHUM00000289947 +HGNC:50318 MARK2P17 microtubule affinity regulating kinase 2 pseudogene 17 pseudogene pseudogene Approved 3q21.3 03q21.3 MAP/microtubule affinity-regulating kinase 2 pseudogene 17 2014-04-07 2016-02-10 2016-02-10 100421499 ENSG00000244065 OTTHUMG00000159809 NG_025622 PGOHUM00000237760 +HGNC:6897 MARK3 microtubule affinity regulating kinase 3 protein-coding gene gene with protein product Approved 14q32.32-q32.33 14q32.32-q32.33 "CTAK1|KP78|PAR-1A" MAP/microtubule affinity-regulating kinase 3 1997-10-27 2016-02-10 2016-10-11 4140 ENSG00000075413 OTTHUMG00000171789 uc001ymw.5 M80359 NM_001128918 "CCDS41993|CCDS45165|CCDS45166|CCDS45167|CCDS55947" P27448 9533022 MGI:1341865 RGD:619883 MARK3 602678 objectId:2099 +HGNC:50312 MARK3P1 microtubule affinity regulating kinase 3 pseudogene 1 pseudogene pseudogene Approved 12q13.11 12q13.11 MAP/microtubule affinity-regulating kinase 3 pseudogene 1 2014-04-07 2016-02-10 2016-02-10 100421550 ENSG00000271642 OTTHUMG00000184790 NG_024005 PGOHUM00000239434 +HGNC:50313 MARK3P2 microtubule affinity regulating kinase 3 pseudogene 2 pseudogene pseudogene Approved 3p25.2 03p25.2 MAP/microtubule affinity-regulating kinase 3 pseudogene 2 2014-04-07 2016-02-10 2016-02-10 100421503 NG_025676 PGOHUM00000261899 +HGNC:50314 MARK3P3 microtubule affinity regulating kinase 3 pseudogene 3 pseudogene pseudogene Approved 3q21.3 03q21.3 MAP/microtubule affinity-regulating kinase 3 pseudogene 3 2014-04-07 2016-02-10 2016-02-10 100533754 ENSG00000243022 OTTHUMG00000159810 NG_028736 PGOHUM00000237761 +HGNC:13538 MARK4 microtubule affinity regulating kinase 4 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "Nbla00650|FLJ90097|KIAA1860|PAR-1D" MARKL1 "MAP/microtubule affinity-regulating kinase like 1|MAP/microtubule affinity-regulating kinase 4" 2000-09-25 2002-06-14 2016-02-10 2016-02-10 57787 ENSG00000007047 OTTHUMG00000181769 uc002pbb.3 AB049127 NM_031417 "CCDS12658|CCDS56097" Q96L34 "23400999|11326310|9108484" MGI:1920955 RGD:1591792 MARK4 606495 objectId:2100 2.7.11.1 +HGNC:6898 MARS methionyl-tRNA synthetase protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "MetRS|SPG70|CMT2U" methionine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class I 131 2001-06-22 2007-02-26 2015-06-25 4141 ENSG00000166986 OTTHUMG00000169996 uc001sog.4 X94754 NM_004990 CCDS8942 P56192 "10448063|24482476" MGI:1345633 RGD:1305321 MARS 156560 376898 6.1.1.10 +HGNC:25133 MARS2 methionyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "mtMetRS|SPAX3" methionine tRNA ligase 2, mitochondrial Aminoacyl tRNA synthetases, Class I 131 2004-12-02 2007-02-26 2014-11-19 92935 ENSG00000247626 OTTHUMG00000154487 uc002uuq.4 BC009115 NM_138395 CCDS33358 Q96GW9 15274629 MGI:2444136 RGD:1311527 MARS2 609728 317667 6.1.1.10 +HGNC:28674 MARVELD1 MARVEL domain containing 1 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "MGC4415|GB14|FLJ23440|FLJ22343|bA548K23.8" MRVLDC1 MARVEL (membrane-associating) domain containing 1 2004-03-05 2004-07-12 2004-07-12 2014-11-19 83742 ENSG00000155254 OTTHUMG00000018865 uc001koj.5 BC004995 NM_031484 Q9BSK0 12477932 MGI:2147570 RGD:1309811 MARVELD1 616970 +HGNC:26401 MARVELD2 MARVEL domain containing 2 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "FLJ30532|TRIC" tricellulin "MRVLDC2|DFNB49" "MARVEL (membrane-associating) domain containing 2|deafness, autosomal recessive 49" 2004-03-15 2004-07-14 2004-07-12 2016-10-05 153562 ENSG00000152939 OTTHUMG00000162512 uc003jwq.4 AK055094 NM_144724 "CCDS34175|CCDS58956" Q8N4S9 17186462 MGI:2446166 RGD:1306909 MARVELD2 610572 160288 +HGNC:30525 MARVELD3 MARVEL domain containing 3 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 MRVLDC3 MARVEL (membrane-associating) domain containing 3 2004-03-15 2004-07-14 2004-07-12 2014-11-19 91862 ENSG00000140832 OTTHUMG00000137591 uc002fat.5 BC013376 NM_052858 "CCDS10904|CCDS32478|CCDS59270" Q96A59 MGI:1920858 RGD:1562056 MARVELD3 614094 +HGNC:6899 MAS1 MAS1 proto-oncogene, G protein-coupled receptor protein-coding gene gene with protein product Approved 6q25.3 06q25.3 MAS1 oncogene G protein-coupled receptors, Class A orphans 262 1988-07-04 2014-06-26 2016-10-05 4142 ENSG00000130368 OTTHUMG00000015944 uc003qsz.4 M13150 NM_002377 CCDS5272 P04201 MGI:96918 RGD:3049 MAS1 165180 objectId:150 +HGNC:13961 MAS1L MAS1 proto-oncogene like, G protein-coupled receptor protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "MAS-L|MRG|dJ994E9.2" MAS1 oncogene-like G protein-coupled receptors, Class A orphans 262 2002-11-18 2014-06-26 2015-09-03 116511 ENSG00000204687 OTTHUMG00000031089 uc011dlq.3 S78653 NM_052967 CCDS4661 P35410 RGD:738049 MAS1L 607235 objectId:151 +HGNC:33448 MAS1LP1 MAS1L pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 OTTHUMG00000086553 MAS1LP "MAS1 oncogene-like pseudogene|MAS1 oncogene-like pseudogene 1" 2007-05-01 2010-02-25 2014-06-26 2014-11-19 646366 ENSG00000230164 OTTHUMG00000086553 NG_009738 PGOHUM00000243120 +HGNC:6901 MASP1 mannan binding lectin serine peptidase 1 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 MASP C4/C2 activating component of Ra-reactive factor "CRARF|PRSS5" "mannan-binding lectin serine protease 1 (C4/C2 activating component of Ra-reactive factor)|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)" "Proteases, serine|Sushi domain containing" "738|1179" 1995-07-06 2016-03-08 2016-10-12 5648 ENSG00000127241 OTTHUMG00000156461 uc003frh.3 D28593 NM_001879 "CCDS33907|CCDS33908|CCDS33909" P48740 "8018603|8240317" MGI:88492 RGD:620213 LRG_349|http://www.lrg-sequence.org/LRG/LRG_349 MASP1 600521 252117 +HGNC:6902 MASP2 mannan binding lectin serine peptidase 2 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 MASP1P1 "mannan-binding lectin serine protease 2|mannan-binding lectin serine peptidase 1 pseudogene 1|mannan-binding lectin serine protease 1 pseudogene 1" Sushi domain containing 1179 1998-12-17 2016-03-08 2016-10-12 10747 ENSG00000009724 OTTHUMG00000002121 uc001aru.4 X98400 NM_006610 "CCDS123|CCDS124" O00187 "9087411|9777418" MGI:1330832 RGD:620214 "MASP2base: Mutation registry for MASP-2 deficiency|http://structure.bmc.lu.se/idbase/MASP2base/|LRG_82|http://www.lrg-sequence.org/LRG/LRG_82" MASP2 605102 332185 S01.229 +HGNC:19034 MAST1 microtubule associated serine/threonine kinase 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "SAST|KIAA0973" PDZ domain containing 1220 2004-06-25 2014-11-18 22983 ENSG00000105613 OTTHUMG00000180514 uc002mvm.4 AB023190 NM_014975 CCDS32921 Q9Y2H9 MGI:1861901 RGD:631372 MAST1 612256 objectId:1510 +HGNC:19035 MAST2 microtubule associated serine/threonine kinase 2 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "MAST205|KIAA0807" PDZ domain containing 1220 2004-02-10 2015-09-03 23139 ENSG00000086015 OTTHUMG00000008007 uc001cov.3 AB047005 NM_015112 CCDS41326 Q6P0Q8 MGI:894676 RGD:1304573 MAST2 612257 objectId:1511 +HGNC:19036 MAST3 microtubule associated serine/threonine kinase 3 protein-coding gene gene with protein product Approved 19p13 19p13 KIAA0561 PDZ domain containing 1220 2004-02-10 2015-09-03 23031 ENSG00000099308 OTTHUMG00000183418 uc002nhz.5 AB011133 XM_038150 CCDS46014 O60307 MGI:2683541 RGD:1587639 MAST3 612258 objectId:1512 +HGNC:19037 MAST4 microtubule associated serine/threonine kinase family member 4 protein-coding gene gene with protein product Approved 5q12.3 05q12.3 KIAA0303 PDZ domain containing 1220 2004-12-06 2014-11-19 375449 ENSG00000069020 OTTHUMG00000152471 uc003jut.3 AY830839 XM_017009447 "CCDS47224|CCDS47225|CCDS54861|CCDS75254|CCDS78015" O15021 9205841 MGI:1918885 RGD:9344213 MAST4 objectId:1513 +HGNC:40865 MAST4-AS1 MAST4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q12.3 05q12.3 MAST4 antisense RNA 1 (non-protein coding) 2011-05-31 2012-08-15 2014-11-18 100506600 ENSG00000229666 OTTHUMG00000152480 uc063ecw.1 +HGNC:41448 MAST4-IT1 MAST4 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 5q12.3 05q12.3 MAST4 intronic transcript 1 (non-protein coding) 2011-05-31 2015-02-25 2015-02-25 100874310 ENSG00000249057 OTTHUMG00000162486 uc063ecl.1 +HGNC:19042 MASTL microtubule associated serine/threonine kinase like protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "FLJ14813|THC2|Gwl" greatwall kinase homolog microtubule associated serine/threonine kinase-like 2004-02-10 2015-11-27 2015-11-27 84930 ENSG00000120539 OTTHUMG00000017855 uc001itl.3 BC009107 NM_032844 "CCDS7153|CCDS53502|CCDS53503" Q96GX5 MGI:1914371 RGD:1309186 MASTL 608221 123154 objectId:1514 +HGNC:6903 MAT1A methionine adenosyltransferase 1A protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "MAT|SAMS|MATA1|SAMS1" S-adenosylmethionine synthetase methionine adenosyltransferase I, alpha 1997-07-01 2016-01-27 2016-10-05 4143 ENSG00000151224 OTTHUMG00000018613 uc001kbw.4 NM_000429 CCDS7365 Q00266 8393662 MGI:88017 RGD:3050 MAT1A 610550 173216 2.5.1.6 +HGNC:6904 MAT2A methionine adenosyltransferase 2A protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "SAMS2|MATA2|MATII" methionine adenosyltransferase II, alpha 1997-07-01 2016-01-27 2016-01-27 4144 ENSG00000168906 OTTHUMG00000130174 uc002spr.4 NM_005911 CCDS1977 P31153 "1426236|9703951" MGI:2443731 RGD:619985 MAT2A 601468 +HGNC:6905 MAT2B methionine adenosyltransferase 2B protein-coding gene gene with protein product Approved 5q34 05q34 "MATIIbeta|SDR23E1" short chain dehydrogenase/reductase family 23E, member 1 methionine adenosyltransferase II, beta Short chain dehydrogenase/reductase superfamily 743 2000-02-01 2016-01-27 2016-01-27 27430 ENSG00000038274 OTTHUMG00000130379 uc003lzk.5 AF182814 NM_013283 "CCDS4364|CCDS4365" Q9NZL9 "9055605|10644686|19027726" MGI:1913667 RGD:1593534 MAT2B 605527 +HGNC:6906 MATK megakaryocyte-associated tyrosine kinase protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "HYLTK|CTK|HYL|Lsk|CHK|HHYLTK|DKFZp434N1212|MGC1708|MGC2101" "Csk-homologous kinase|tyrosine-protein kinase CTK|protein kinase HYL|hematopoietic consensus tyrosine-lacking kinase|tyrosylprotein kinase|hydroxyaryl-protein kinase|Csk-type protein tyrosine kinase|HYL tyrosine kinase|tyrosine kinase MATK|leukocyte carboxyl-terminal src kinase related" SH2 domain containing 741 1994-07-22 2016-07-26 4145 ENSG00000007264 OTTHUMG00000180916 uc002lyv.4 L18974 NM_139355 "CCDS12113|CCDS12114|CCDS42468" P42679 "8288563|7530249" MGI:99259 RGD:69058 MATK 600038 objectId:2101 +HGNC:6907 MATN1 matrilin 1, cartilage matrix protein protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "CRTM|CMP" 1991-05-09 2016-10-05 4146 ENSG00000162510 OTTHUMG00000003705 uc001brz.4 M55675 NM_002379 CCDS336 P21941 "2246248|9083061" MGI:106591 RGD:1359410 MATN1 115437 +HGNC:40364 MATN1-AS1 MATN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p35.2 01p35.2 MATN1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 100129196 ENSG00000186056 OTTHUMG00000003706 uc057ecc.1 AK057725 NR_034182 +HGNC:6908 MATN2 matrilin 2 protein-coding gene gene with protein product Approved 8q22.1-q22.2 08q22.1-q22.2 1998-04-29 2015-09-03 4147 ENSG00000132561 OTTHUMG00000164795 uc003yic.4 U69263 XM_017013417 "CCDS55264|CCDS55265|CCDS83309" O00339 "9083061|11852232" MGI:109613 RGD:1305353 MATN2 602108 +HGNC:6909 MATN3 matrilin 3 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 "EDM5|HOA" 1998-04-29 2016-10-05 4148 ENSG00000132031 OTTHUMG00000151788 uc002rdl.4 AJ001047 NM_002381 CCDS46226 O15232 "9287130|9350998" MGI:1328350 RGD:1305085 MATN3 602109 123158 +HGNC:6910 MATN4 matrilin 4 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 1998-12-15 2015-09-03 8785 ENSG00000124159 OTTHUMG00000033043 uc061xhd.1 AJ007581 XM_017028113 "CCDS13348|CCDS46607" O95460 "9827539|9027493" MGI:1328314 RGD:1309732 MATN4 603897 +HGNC:6912 MATR3 matrin 3 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "KIAA0723|MGC9105|VCPDM" MPD2 myopathy, distal 2 1999-07-21 2016-10-05 9782 ENSG00000015479 OTTHUMG00000129229 uc003ldx.4 M63483 NM_018834 "CCDS4210|CCDS54908|CCDS75316" P43243 "2033075|19344878" MGI:1298379 RGD:3052 MATR3 164015 189131 +HGNC:29140 MAU2 MAU2 sister chromatid cohesion factor protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "MGC75361|mau-2|MAU2L|SCC4" sister chromatid cohesion 4 KIAA0892 "KIAA0892|MAU2 chromatid cohesion factor homolog (C. elegans)" 2004-02-09 2013-08-28 2016-01-11 2016-01-11 23383 ENSG00000129933 OTTHUMG00000150188 uc002nmk.5 AB020699 NM_015329 CCDS32969 Q9Y6X3 10048485 MGI:1921799 RGD:1308759 MAU2 614560 +HGNC:29233 MAVS mitochondrial antiviral signaling protein protein-coding gene gene with protein product Approved 20p13 20p13 "VISA|KIAA1271|IPS-1|Cardif" "virus-induced signaling adaptor|IFN-B promoter stimulator 1|CARD adaptor inducing IFN-beta" Caspase recruitment domain containing 959 2009-04-01 2015-06-16 57506 ENSG00000088888 OTTHUMG00000031765 uc002wjw.5 DQ174270 NM_020746 "CCDS33437|CCDS56176" Q7Z434 "16125763|16153868" MGI:2444773 RGD:1359371 MAVS 609676 +HGNC:6913 MAX MYC associated factor X protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8" MAX protein Basic helix-loop-helix proteins 420 1992-10-27 2005-02-08 2016-10-12 4149 ENSG00000125952 OTTHUMG00000142809 uc001xif.3 NM_197957 "CCDS9770|CCDS9771|CCDS9772|CCDS9774|CCDS41965|CCDS81813" P61244 1557420 MGI:96921 RGD:621101 LRG_530|http://www.lrg-sequence.org/LRG/LRG_530 MAX 154950 290420 +HGNC:6914 MAZ MYC associated zinc finger protein protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "ZF87|Pur-1|Zif87|ZNF801" purine-binding transcription factor MYC-associated zinc finger protein (purine-binding transcription factor) Zinc fingers C2H2-type 28 1998-05-20 2016-02-12 2016-02-12 4150 ENSG00000103495 OTTHUMG00000190393 uc002dtx.5 M93339 NM_002383 "CCDS42143|CCDS42144|CCDS61902|CCDS61903" P56270 "1567856|1502157" MGI:1338823 RGD:1594632 MAZ 600999 +HGNC:6915 MB myoglobin protein-coding gene gene with protein product Approved 22q12.3 22q12.3 PVALB 2001-06-22 2016-10-05 4151 ENSG00000198125 OTTHUMG00000150606 uc003aob.3 NM_203377 CCDS13917 P02144 "10591208|2989088" MGI:96922 RGD:620411 MB 160000 +HGNC:21367 MB21D1 Mab-21 domain containing 1 protein-coding gene gene with protein product Approved 6q13 06q13 cGAS cyclic GMP-AMP synthase C6orf150 chromosome 6 open reading frame 150 2003-06-10 2011-02-23 2011-02-23 2016-01-29 115004 ENSG00000164430 OTTHUMG00000015034 uc003pgx.2 BC012928 NM_138441 CCDS4978 Q8N884 MGI:2442261 RGD:1586939 MB21D1 613973 +HGNC:30438 MB21D2 Mab-21 domain containing 2 protein-coding gene gene with protein product Approved 3q29 03q29 C3orf59 chromosome 3 open reading frame 59 2006-02-07 2011-02-23 2011-02-23 2016-10-05 151963 ENSG00000180611 OTTHUMG00000155768 uc011bsp.3 AK056276 NM_178496 CCDS3302 Q8IYB1 12477932 MGI:1917028 RGD:1559643 MB21D2 +HGNC:6916 MBD1 methyl-CpG binding domain protein 1 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "PCM1|CXXC3" "Zinc fingers CXXC-type|Methyl-CpG binding domain containing" "136|1025" 1997-10-29 2016-10-05 4152 ENSG00000141644 OTTHUMG00000132669 uc010dow.3 Y10746 NM_015846 "CCDS11941|CCDS11942|CCDS11943|CCDS11944|CCDS32832|CCDS56071|CCDS56072|CCDS56073|CCDS59318|CCDS59319|CCDS59320" Q9UIS9 "9207790|10441743" MGI:1333811 RGD:1305980 MBD1 156535 +HGNC:6917 MBD2 methyl-CpG binding domain protein 2 protein-coding gene gene with protein product Approved 18q21.2 18q21.2 "Methyl-CpG binding domain containing|NuRD complex" "1025|1305" 1999-01-11 2016-10-05 8932 ENSG00000134046 OTTHUMG00000132705 uc002lfg.2 AF072242 NM_003927 "CCDS11953|CCDS45871" Q9UBB5 "9774669|10441743" MGI:1333813 RGD:1595452 MBD2 603547 +HGNC:6918 MBD3 methyl-CpG binding domain protein 3 protein-coding gene gene with protein product Approved 19p13 19p13 "Methyl-CpG binding domain containing|NuRD complex" "1025|1305" 1999-01-11 2014-11-19 53615 ENSG00000071655 OTTHUMG00000180081 uc002ltj.5 AF072247 NM_003926 "CCDS12072|CCDS62481" O95983 "9774669|10441743" MGI:1333812 RGD:1307389 MBD3 603573 +HGNC:15774 MBD3L1 methyl-CpG binding domain protein 3 like 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MBD3L methyl-CpG binding domain protein 3-like 2001-06-21 2003-03-21 2016-03-15 2016-03-15 85509 ENSG00000170948 OTTHUMG00000182198 uc060sxz.1 AY038022 NM_145208 CCDS12209 Q8WWY6 12504854 MGI:1920753 RGD:1308259 MBD3L1 607963 +HGNC:18532 MBD3L2 methyl-CpG binding domain protein 3 like 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 2002-04-29 2016-03-15 2016-03-15 125997 ENSG00000230522 OTTHUMG00000181975 uc010dvf.2 AF503919 NM_144614 CCDS42483 Q8NHZ7 MGI:2158460 RGD:1308833 MBD3L2 607964 +HGNC:37205 MBD3L3 methyl-CpG binding domain protein 3 like 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 2011-08-04 2016-03-15 2016-03-15 653657 ENSG00000182315 OTTHUMG00000181976 uc021uns.2 NM_001164425 CCDS45944 A6NE82 MGI:2158460 MBD3L3 +HGNC:37206 MBD3L4 methyl-CpG binding domain protein 3 like 4 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 2011-08-04 2016-03-15 2016-03-15 653656 ENSG00000205718 OTTHUMG00000181974 uc021unr.2 NM_001164419 CCDS54205 A6NDZ8 MGI:2158460 MBD3L4 +HGNC:37204 MBD3L5 methyl-CpG binding domain protein 3 like 5 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 methyl-CpG binding domain protein 3-like 5 2011-08-04 2016-03-15 2016-03-15 284428 ENSG00000237247 OTTHUMG00000181973 uc010xjl.3 NM_001136507 CCDS45942 A6NJ08 MGI:2158460 MBD3L5 +HGNC:6919 MBD4 methyl-CpG binding domain 4, DNA glycosylase protein-coding gene gene with protein product Approved 3q21.3 03q21.3 MED1 methyl-CpG binding domain protein 4 "DNA glycosylases|Methyl-CpG binding domain containing" "1024|1025" 1999-01-11 2016-03-15 2016-03-15 8930 ENSG00000129071 OTTHUMG00000159463 uc003emh.3 AF072250 NM_003925 "CCDS3058|CCDS63766|CCDS63767|CCDS63768|CCDS63769" O95243 "9774669|10097147" MGI:1333850 RGD:1585874 MBD4 603574 +HGNC:20444 MBD5 methyl-CpG binding domain protein 5 protein-coding gene gene with protein product Approved 2q23.2 02q23.2 "FLJ11113|KIAA1461" "Methyl-CpG binding domain containing|PWWP domain containing" "1025|1147" 2003-03-03 2014-11-19 55777 ENSG00000204406 OTTHUMG00000150440 uc002twm.5 AB040894 XM_011511470 CCDS33302 Q9P267 12529184 MGI:2138934 RGD:1562961 MBD5 611472 244206 +HGNC:20445 MBD6 methyl-CpG binding domain protein 6 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 KIAA1887 Methyl-CpG binding domain containing 1025 2003-03-03 2015-08-25 114785 ENSG00000166987 OTTHUMG00000170099 uc001soj.2 AB067474 XM_011537851 CCDS8944 Q96DN6 12529184 MGI:106378 RGD:1311050 MBD6 +HGNC:20427 MBIP MAP3K12 binding inhibitory protein 1 protein-coding gene gene with protein product Approved 14q13.3 14q13.3 ATAC complex 1058 2003-10-03 2016-10-05 51562 ENSG00000151332 OTTHUMG00000140222 uc001wtm.2 BC016821 NM_016586 "CCDS9658|CCDS45096|CCDS76672" Q9NS73 10801814 MGI:1918320 RGD:1306310 MBIP 609431 +HGNC:6921 MBL1P mannose binding lectin 1, pseudogene pseudogene pseudogene Approved 10q22.3 10q22.3 COLEC3P MBL1P1 "mannose-binding lectin (protein A) 1, pseudogene 1|mannose-binding lectin (protein A) 1, pseudogene" "Collectins|C-type lectin domain containing" "491|1298" 1998-10-12 2009-12-02 2016-06-27 2016-06-27 8512 ENSG00000242600 OTTHUMG00000018595 AF019382 NR_002724 9501312 MGI:96923 RGD:3055 PGOHUM00000258533 +HGNC:6922 MBL2 mannose binding lectin 2 protein-coding gene gene with protein product Approved 10q21.1 10q21.1 COLEC1 MBL "mannose-binding lectin (protein C) 2, soluble (opsonic defect)|mannose-binding lectin (protein C) 2, soluble" Collectins 491 1990-05-25 2016-02-01 2016-10-12 4153 ENSG00000165471 OTTHUMG00000150270 uc001jjt.3 AF360991 NM_000242 CCDS7247 P11226 "1675710|1672848" MGI:96924 RGD:67380 LRG_154|http://www.lrg-sequence.org/LRG/LRG_154 MBL2 154545 457472 +HGNC:2221 MBL3P mannose-binding lectin family member 3, pseudogene pseudogene pseudogene Approved 10q22.3 10q22.3 MBL COLEC2 collectin sub-family member 2 Collectins 491 2000-04-11 2009-12-02 2011-08-09 2014-11-19 50639 ENSG00000219430 OTTHUMG00000018569 NG_029674 +HGNC:22180 MBLAC1 metallo-beta-lactamase domain containing 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 MGC49416 2009-04-08 2009-04-08 2016-10-05 255374 ENSG00000214309 OTTHUMG00000154846 uc003utp.4 BC031288 NM_203397 CCDS43620 A4D2B0 MGI:2679717 RGD:1306932 MBLAC1 +HGNC:33711 MBLAC2 metallo-beta-lactamase domain containing 2 protein-coding gene gene with protein product Approved 5q14.3 05q14.3 "DKFZp686P15118|MGC46734" 2009-04-08 2009-04-08 2015-07-16 153364 ENSG00000176055 OTTHUMG00000131327 uc003kjp.3 BC038230 NM_203406 CCDS4067 Q68D91 MGI:1920102 RGD:1306703 MBLAC2 +HGNC:6923 MBNL1 muscleblind like splicing regulator 1 protein-coding gene gene with protein product Approved 3q25.1-q25.2 03q25.1-q25.2 "KIAA0428|EXP42|EXP40|EXP35|EXP" MBNL "muscleblind (Drosophila)-like|muscleblind-like (Drosophila)|muscleblind-like splicing regulator 1" Zinc fingers CCCH-type 73 1998-02-26 2003-03-14 2015-11-13 2016-10-11 4154 ENSG00000152601 OTTHUMG00000159163 uc062pck.1 Y13829 NM_021038 "CCDS3163|CCDS3164|CCDS3165|CCDS3166|CCDS3167|CCDS3168|CCDS54656|CCDS82864" Q9NR56 MGI:1928482 RGD:628668 MBNL1 606516 +HGNC:44584 MBNL1-AS1 MBNL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 2012-11-19 2012-11-19 401093 ENSG00000229619 OTTHUMG00000186506 uc011boe.3 "AK304857|BM790896" NR_027037 +HGNC:16746 MBNL2 muscleblind like splicing regulator 2 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "MBLL|MBLL39" "muscleblind-like 2 (Drosophila)|muscleblind-like splicing regulator 2" Zinc fingers CCCH-type 73 2003-03-05 2016-02-01 2016-10-05 10150 ENSG00000139793 OTTHUMG00000017239 uc001vmz.5 AF061261 NM_144778 "CCDS9483|CCDS9484|CCDS76644" Q5VZF2 11929853 MGI:2145597 RGD:1591755 MBNL2 607327 +HGNC:20564 MBNL3 muscleblind like splicing regulator 3 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 "CHCR|FLJ11316|MBLX39|MBXL" "muscleblind-like 3 (Drosophila)|muscleblind-like splicing regulator 3" Zinc fingers CCCH-type 73 2003-03-05 2016-02-01 2016-02-01 55796 ENSG00000076770 OTTHUMG00000022426 uc004ewv.5 AF491305 NM_018388 "CCDS14633|CCDS14634|CCDS55492|CCDS55493|CCDS55494" Q9NUK0 "12297108|10970838" MGI:2444912 RGD:1565834 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MBNL3 MBNL3 300413 +HGNC:21579 MBOAT1 membrane bound O-acyltransferase domain containing 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "MGC44669|dJ434O11.1|LPEAT1" lysophosphatidylethanolamine acyltransferase 1 OACT1 O-acyltransferase (membrane bound) domain containing 1 Membrane bound O-acyltransferases 1036 2003-06-26 2006-06-29 2006-06-29 2014-11-18 154141 ENSG00000172197 OTTHUMG00000014334 uc003ncx.4 AK093994 XM_006714999 CCDS34346 Q6ZNC8 18287005 MGI:2387184 RGD:1565561 MBOAT1 611732 +HGNC:25193 MBOAT2 membrane bound O-acyltransferase domain containing 2 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "FLJ14415|FLJ90298" OACT2 O-acyltransferase (membrane bound) domain containing 2 Membrane bound O-acyltransferases 1036 2004-07-06 2006-06-29 2006-06-29 2016-10-05 129642 ENSG00000143797 OTTHUMG00000090363 uc002qzg.2 BC016005 NM_138799 CCDS1660 Q6ZWT7 MGI:1914466 RGD:1305798 MBOAT2 611949 +HGNC:32311 MBOAT4 membrane bound O-acyltransferase domain containing 4 protein-coding gene gene with protein product Approved 8p12 08p12 "FKSG89|GOAT" ghrelin O-acyltransferase OACT4 O-acyltransferase (membrane bound) domain containing 4 Membrane bound O-acyltransferases 1036 2005-09-27 2006-06-29 2006-06-29 2015-08-25 619373 ENSG00000177669 OTTHUMG00000163824 uc010lvg.4 AF359269 XM_017013726 CCDS47835 Q96T53 18443287 MGI:2685017 RGD:1566335 MBOAT4 611940 +HGNC:15505 MBOAT7 membrane bound O-acyltransferase domain containing 7 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "BB1|hMBOA-7|LPIAT" lysophosphatidylinositol acyltransferase LENG4 leukocyte receptor cluster (LRC) member 4 Membrane bound O-acyltransferases 1036 2004-01-28 2008-01-17 2008-01-17 2016-10-05 79143 ENSG00000125505 OTTHUMG00000066516 uc032icm.2 AF211969 NM_024298 "CCDS12883|CCDS54315|CCDS54316" Q96N66 "10941842|8702217|18094042" MGI:1924832 RGD:1306945 MBOAT7 606048 +HGNC:6925 MBP myelin basic protein protein-coding gene gene with protein product Approved 18q23 18q23 1986-01-01 2014-11-18 4155 ENSG00000197971 OTTHUMG00000132874 uc002lmn.4 NM_001025081 "CCDS12011|CCDS32847|CCDS42448|CCDS42449|CCDS42450" P02686 2425357 MGI:96925 RGD:3054 MBP 159430 +HGNC:6926 MBS1 Moebius syndrome 1 phenotype phenotype only Approved 13q12.2 13q12.2 MBS 1991-08-21 1999-11-15 4156 1870098 157900 +HGNC:6927 MBS2 Moebius syndrome 2 phenotype phenotype only Approved 3q21-q22 03q21-q22 HCFP1 hereditary congenital facial paresis 1 1999-10-08 2011-02-11 7880 8872479 601471 +HGNC:6928 MBS3 Moebius syndrome 3 phenotype phenotype only Approved 10q21.3-q22.1 10q21.3-q22.1 HCFP2 hereditary congenital facial paresis 2 1999-10-08 2011-02-11 22811 10441582 604185 +HGNC:19866 MBTD1 mbt domain containing 1 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "SA49P01|FLJ20055" MBT domain containing 1263 2003-01-15 2015-04-21 54799 ENSG00000011258 OTTHUMG00000150442 uc002itr.4 AK000062 XM_011524922 CCDS11581 Q05BQ5 MGI:2143977 RGD:1592427 MBTD1 +HGNC:15456 MBTPS1 membrane bound transcription factor peptidase, site 1 protein-coding gene gene with protein product Approved 16q23.3-q24.1 16q23.3-q24.1 "S1P|KIAA0091|SKI-1|PCSK8" "subtilisin kexin isozyme 1|site-1 protease" membrane-bound transcription factor protease, site 1 Proprotein convertase subtilisin/kexin family 973 2001-03-30 2015-11-11 2016-10-11 8720 ENSG00000140943 OTTHUMG00000137639 uc002fhi.5 D42053 NM_003791 CCDS10941 Q14703 "9809072|10944850" MGI:1927235 RGD:70935 MBTPS1 603355 S08.063 objectId:2381 +HGNC:15455 MBTPS2 membrane bound transcription factor peptidase, site 2 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 S2P site-2 protease KFSD "membrane-bound transcription factor protease, site 2|keratosis follicularis spinulosa decalvans" 2001-03-30 2015-11-11 2016-10-05 51360 ENSG00000012174 OTTHUMG00000021237 uc004dae.4 AF019612 NM_015884 CCDS14201 O43462 "9847074|9659902|20672378" MGI:2444506 RGD:1566171 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MBTPS2 MBTPS2 300294 189135 M50.001 +HGNC:6929 MC1R melanocortin 1 receptor protein-coding gene gene with protein product Approved 16q24.3 16q24.3 MSH-R alpha melanocyte stimulating hormone receptor melanocortin 1 receptor (alpha melanocyte stimulating hormone receptor) Melanocortin receptors 236 1993-07-27 2016-02-01 2016-02-01 4157 ENSG00000258839 OTTHUMG00000171163 uc002fpe.4 NM_002386 CCDS56011 Q01726 8458079 MGI:99456 RGD:1312046 MC1R 155555 139778 objectId:282 +HGNC:6930 MC2R melanocortin 2 receptor protein-coding gene gene with protein product Approved 18p11.2 18p11.2 ACTHR adrenocorticotropic hormone receptor melanocortin 2 receptor (adrenocorticotropic hormone) Melanocortin receptors 236 1993-07-20 2016-02-01 2016-02-01 4158 ENSG00000185231 OTTHUMG00000131721 uc002ksp.2 XM_017025781 CCDS11869 Q01718 8390157 MGI:96928 RGD:628649 MC2R 607397 123161 objectId:283 +HGNC:6931 MC3R melanocortin 3 receptor protein-coding gene gene with protein product Approved 20q13.2 20q13.2 MC3 Melanocortin receptors 236 1993-07-27 2016-10-05 4159 ENSG00000124089 OTTHUMG00000032785 uc002xxb.2 NM_019888 CCDS13449 P41968 8463333 MGI:96929 RGD:3056 MC3R 155540 220900 objectId:284 +HGNC:6932 MC4R melanocortin 4 receptor protein-coding gene gene with protein product Approved 18q21.32 18q21.32 Melanocortin receptors 236 1993-07-27 2016-10-05 4160 ENSG00000166603 OTTHUMG00000132766 uc002lie.2 AY236539 NM_005912 CCDS11976 P32245 "7949735|9763669" MGI:99457 RGD:3057 MC4R 155541 168091 objectId:285 +HGNC:6933 MC5R melanocortin 5 receptor protein-coding gene gene with protein product Approved 18p11.21 18p11.21 Melanocortin receptors 236 1994-01-10 2016-10-05 4161 ENSG00000176136 OTTHUMG00000131720 uc010xaf.3 AY268429 NM_005913 CCDS11868 P33032 8396929 MGI:99420 RGD:3058 MC5R 600042 objectId:286 +HGNC:6934 MCAM melanoma cell adhesion molecule protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "MUC18|CD146" Gicerin "CD molecules|V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "471|590|592|594" 1995-12-18 2014-11-19 4162 ENSG00000076706 OTTHUMG00000166197 uc001pwf.4 X68264 XM_017017759 CCDS31690 P43121 "2602381|10702685" MGI:1933966 RGD:620463 MCAM 155735 CD146 +HGNC:29622 MCAT malonyl-CoA-acyl carrier protein transacylase protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "MT|MCT|fabD|FASN2C|NET62" [acyl-carrier-protein] S-malonyltransferase malonyl CoA:ACP acyltransferase (mitochondrial) 2006-08-24 2015-11-11 2015-11-11 27349 ENSG00000100294 OTTHUMG00000150704 uc003bdl.2 AL359401 NM_173467 "CCDS14045|CCDS33660" Q8IVS2 12882974 MGI:2388651 RGD:1306698 MCAT 614479 2.3.1.39 +HGNC:6935 MCC mutated in colorectal cancers protein-coding gene gene with protein product Approved 5q22.2 05q22.2 EF-hand domain containing 863 1991-08-19 2016-10-05 4163 ENSG00000171444 OTTHUMG00000128804 uc003kql.5 NM_001085377 "CCDS4111|CCDS43351" P23508 "1848370|25200342" MGI:96930 RGD:6501555 MCC 159350 +HGNC:6936 MCCC1 methylcrotonoyl-CoA carboxylase 1 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 MCCA methylcrotonoyl-CoA carboxylase alpha methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) 1992-12-07 2015-11-13 2015-11-13 56922 ENSG00000078070 OTTHUMG00000158355 uc003fle.4 AF310972 NM_020166 CCDS3241 Q96RQ3 11170888 MGI:1919289 RGD:1310615 MCCC1 609010 123164 6.4.1.4 +HGNC:40366 MCCC1-AS1 MCCC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.1 03q27.1 MCCC1 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 106480736 ENSG00000243368 OTTHUMG00000158356 uc062qni.1 +HGNC:6937 MCCC2 methylcrotonoyl-CoA carboxylase 2 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 MCCB methylcrotonoyl-CoA carboxylase beta methylcrotonoyl-Coenzyme A carboxylase 2 (beta) 1992-12-07 2015-11-13 2016-10-05 64087 ENSG00000131844 OTTHUMG00000162505 uc003kbs.5 AF310971 XR_001742172 CCDS34184 Q9HCC0 MGI:1925288 RGD:1310279 MCCC2 609014 123167 6.4.1.4 +HGNC:20668 MCCD1 mitochondrial coiled-coil domain 1 protein-coding gene gene with protein product Approved 6p21.3 06p21.3 2003-10-17 2014-11-19 401250 ENSG00000204511 OTTHUMG00000134292 uc003ntp.2 NM_001011700 CCDS34396 P59942 14527716 MCCD1 609624 +HGNC:33449 MCCD1P1 mitochondrial coiled-coil domain 1 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 OTTHUMG00000130506 2007-05-01 2016-10-05 100048903 ENSG00000235963 OTTHUMG00000130506 NG_032195 PGOHUM00000243131 +HGNC:33462 MCCD1P2 mitochondrial coiled-coil domain 1 pseudogene 2 pseudogene pseudogene Approved 6p22.1 06p22.1 BPG309N1.16 2007-05-02 2016-10-05 100048924 ENSG00000224312 OTTHUMG00000130500 NG_032719 PGOHUM00000243133 +HGNC:6939 MCDR1 macular dystrophy, retinal, 1 (North Carolina type) phenotype phenotype only Approved 6q14-q16.2 06q14-q16.2 1992-02-17 2011-02-11 4167 1562260 +HGNC:20206 MCDR3 macular dystrophy, retinal 3 phenotype phenotype only Approved 5p15.33-p13.1 05p15.33-p13.1 2003-01-10 2011-02-11 317668 608850 +HGNC:32303 MCDR4 macular dystrophy, retinal, 4 (North Carolina type with progressive sensorineural hearing loss) phenotype phenotype only Approved 14q11.2 14q11.2 2005-09-26 2005-09-26 619370 12812894 +HGNC:49649 MCDR5 macular dystrophy 5 phenotype phenotype only Approved 19q13.31-q13.32 19q13.31-q13.32 2014-01-28 2014-01-28 106660618 17142619 +HGNC:16732 MCEE methylmalonyl-CoA epimerase protein-coding gene gene with protein product Approved 2p13.3 02p13.3 GLOD2 glyoxalase domain containing 2 2001-10-03 2015-11-11 2015-11-11 84693 ENSG00000124370 OTTHUMG00000129709 uc002shs.3 AF364547 NM_032601 CCDS1915 Q96PE7 "16697227|16752391|16843692" MGI:1920974 RGD:1309966 MCEE database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=MCEE MCEE 608419 181982 5.1.99.1 +HGNC:27291 MCEMP1 mast cell expressed membrane protein 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC132456 C19orf59 chromosome 19 open reading frame 59 2006-08-30 2014-04-16 2016-06-22 2016-06-22 199675 ENSG00000183019 AF461155 NM_174918 CCDS12183 Q8IX19 15953541 MGI:1916439 RGD:1565374 609565 +HGNC:6940 MCF2 MCF.2 cell line derived transforming sequence protein-coding gene gene with protein product Approved Xq27.1 Xq27.1 "DBL|ARHGEF21" Oncogene MCF2 (oncogene DBL) Rho guanine nucleotide exchange factors 722 1989-06-06 2016-10-05 4168 ENSG00000101977 OTTHUMG00000022537 uc004faw.3 NM_005369 "CCDS14667|CCDS48175|CCDS55514|CCDS55515|CCDS55516|CCDS55517" P10911 "2577874|1611909" MGI:96932 RGD:1566098 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MCF2 MCF2 311030 +HGNC:14576 MCF2L MCF.2 cell line derived transforming sequence like protein-coding gene gene with protein product Approved 13q34 13q34 "KIAA0362|DBS|OST|ARHGEF14" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2001-02-08 2015-11-10 2016-04-25 23263 ENSG00000126217 OTTHUMG00000017377 uc010tjs.3 AB002360 NM_001320815 "CCDS45070|CCDS9527|CCDS81782" O15068 9205841 MGI:103263 RGD:619782 MCF2L 609499 +HGNC:39825 MCF2L-AS1 MCF2L antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 MCF2L antisense RNA 1 (non-protein coding) 2011-03-30 2012-08-15 2014-11-18 100289410 ENSG00000235280 OTTHUMG00000057130 uc058ykf.1 NR_034002 +HGNC:30319 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "KIAA0861|ARHGEF22" Rho guanine nucleotide exchange factors 722 2004-09-06 2016-10-05 23101 ENSG00000053524 OTTHUMG00000158388 uc003fli.3 AB020668 NM_015078 CCDS3243 Q86YR7 MCF2L2 +HGNC:18451 MCFD2 multiple coagulation factor deficiency 2 protein-coding gene gene with protein product Approved 2p21 02p21 "F5F8D|LMAN1IP|SDNSF" EF-hand domain containing 863 2003-06-24 2016-10-12 90411 ENSG00000180398 OTTHUMG00000153100 uc010fba.4 AF475284 NM_139279 "CCDS33192|CCDS54354|CCDS54355" Q8NI22 "12717434|2463956" MGI:2183439 RGD:628690 LRG_566|http://www.lrg-sequence.org/LRG/LRG_566 MCFD2 607788 123170 +HGNC:21582 MCFD2P1 multiple coagulation factor deficiency 2 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "dJ153G14.2|NUCB2-L" "C6orf44|MCFD2L" "chromosome 6 open reading frame 44|multiple coagulation factor deficiency 2-like" 2003-11-26 2010-10-20 2010-10-20 2016-10-05 645927 ENSG00000237154 OTTHUMG00000014476 NG_009330 PGOHUM00000243529 +HGNC:4479 MCHR1 melanin concentrating hormone receptor 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "SLC1|MCH1R" GPR24 "G protein-coupled receptor 24|melanin-concentrating hormone receptor 1" Melanin concentrating hormone receptors 235 1996-11-15 2006-02-15 2015-11-23 2016-10-05 2847 ENSG00000128285 OTTHUMG00000150256 uc003ayz.4 NM_005297 CCDS14004 Q99705 MGI:2180756 RGD:619841 MCHR1 601751 objectId:280 +HGNC:20867 MCHR2 melanin concentrating hormone receptor 2 protein-coding gene gene with protein product Approved 6q16.2 06q16.2 "SLT|MCH2|MCH2R" GPR145 "G protein-coupled receptor 145|melanin-concentrating hormone receptor 2" Melanin concentrating hormone receptors 235 2003-05-13 2006-02-15 2015-11-23 2016-10-05 84539 ENSG00000152034 OTTHUMG00000015270 uc003pqh.1 AF347063 NM_032503 CCDS5044 Q969V1 "11355873|11274220" MCHR2 606111 objectId:281 +HGNC:48980 MCHR2-AS1 MCHR2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q16.2-q16.3 06q16.2-q16.3 2013-07-24 2016-10-11 728012 ENSG00000229315 OTTHUMG00000015271 NR_038384 +HGNC:40050 MCIDAS multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "MCI|IDAS" multicilin MCIN multiciliate cell differentiation 1 2012-07-18 2013-02-28 2013-02-28 2013-02-28 345643 ENSG00000234602 OTTHUMG00000162600 uc021xyp.2 FR854393 NM_001190787 CCDS54853 D6RGH6 "21543332|22231168" MGI:3648807 RGD:1584164 614086 +HGNC:6942 MCKD2 medullary cystic kidney disease 2 (autosomal dominant) phenotype phenotype only Approved 16p12 16p12 ADMCKD2 1999-06-02 2011-02-11 10330352 +HGNC:6943 MCL1 BCL2 family apoptosis regulator protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "BCL2L3|Mcl-1" "myeloid cell leukemia sequence 1 (BCL2-related)|myeloid cell leukemia 1" BCL2 family 1057 1993-11-09 2016-06-17 2016-10-05 4170 ENSG00000143384 OTTHUMG00000034867 uc001euz.4 BC017197 NM_021960 "CCDS956|CCDS957|CCDS72909" Q07820 "7682708|7835896" MGI:101769 RGD:620525 MCL1 159552 objectId:2847 +HGNC:6944 MCM2 minichromosome maintenance complex component 2 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "D3S3194|KIAA0030|BM28|cdc19" mitotin "CCNL1|CDCL1" "minichromosome maintenance deficient (S. cerevisiae) 2 (mitotin)|MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae)" MCM family 1085 1993-09-30 2007-04-04 2016-10-05 4171 ENSG00000073111 OTTHUMG00000159637 uc003ejp.5 X67334 NM_004526 CCDS3043 P49736 "1710453|8258304" MGI:105380 RGD:1305577 MCM2 116945 459297 +HGNC:6945 MCM3 minichromosome maintenance complex component 3 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 "minichromosome maintenance deficient (S. cerevisiae) 3|MCM3 minichromosome maintenance deficient 3 (S. cerevisiae)" MCM family 1085 1994-12-13 2007-04-04 2016-10-05 4172 ENSG00000112118 OTTHUMG00000014844 uc063ozz.1 X62153 NM_002388 "CCDS4940|CCDS75468" P25205 1549468 MGI:101845 RGD:1305168 MCM3 602693 +HGNC:6946 MCM3AP minichromosome maintenance complex component 3 associated protein protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "Map80|KIAA0572|GANP|SAC3" germinal-centre associated nuclear protein "minichromosome maintenance deficient (S. cerevisiae) 3-associated protein|MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" Transcription and export complex 2 1276 1999-03-04 2007-04-04 2014-11-19 8888 ENSG00000160294 OTTHUMG00000090630 uc031rwc.2 AB005543 NM_003906 CCDS13734 O60318 "9712829|16914116|21195085" MGI:1930089 RGD:1306834 MCM3AP 603294 +HGNC:16417 MCM3AP-AS1 MCM3AP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "FLJ10508|NCRNA00031" non-protein coding RNA 31 "C21orf85|MCM3APAS|MCM3AP-AS" "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein, antisense|MCM3AP antisense RNA (non-protein coding)|MCM3AP antisense RNA 1 (non-protein coding)" 2001-08-24 2010-11-25 2012-08-15 2012-10-12 114044 ENSG00000215424 OTTHUMG00000090639 uc062aza.1 AK001370 NR_002776 12036297 +HGNC:6947 MCM4 minichromosome maintenance complex component 4 protein-coding gene gene with protein product Approved 8q11.21 08q11.21 "CDC54|hCdc21|P1-Cdc21|MGC33310" CDC21 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae) MCM family 1085 1994-12-13 2007-04-04 2016-10-05 4173 ENSG00000104738 OTTHUMG00000164205 uc003xqk.3 NM_005914 CCDS6143 P33991 7601140 MGI:103199 RGD:3060 MCM4 602638 294681 +HGNC:6948 MCM5 minichromosome maintenance complex component 5 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 CDC46 "minichromosome maintenance deficient (S. cerevisiae) 5 (cell division cycle 46)|MCM5 minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae)" MCM family 1085 1994-12-13 2007-04-04 2016-10-05 4174 ENSG00000100297 OTTHUMG00000150961 uc003anu.5 XM_006724242 CCDS13915 P33992 "8751386|10591208" MGI:103197 RGD:1306616 MCM5 602696 +HGNC:6949 MCM6 minichromosome maintenance complex component 6 protein-coding gene gene with protein product Approved 2q21.3 02q21.3 Mis5 MIS5 homolog (S.pombe) "minichromosome maintenance deficient (mis5, S. pombe) 6|MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae)|minichromosome maintenance deficient 6 homolog (S. cerevisiae)" MCM family 1085 1996-06-14 2007-04-04 2016-10-05 4175 ENSG00000076003 OTTHUMG00000131739 uc002tuw.5 NM_005915 CCDS2179 Q14566 MGI:1298227 RGD:61967 MCM6 601806 325604 +HGNC:6950 MCM7 minichromosome maintenance complex component 7 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "CDC47|PPP1R104" protein phosphatase 1, regulatory subunit 104 MCM2 "minichromosome maintenance deficient (S. cerevisiae) 7|MCM7 minichromosome maintenance deficient 7 (S. cerevisiae)" "Protein phosphatase 1 regulatory subunits|MCM family" "694|1085" 1994-12-13 2007-04-04 2016-10-05 4176 ENSG00000166508 OTTHUMG00000154671 uc003usw.3 XM_005250348 "CCDS5683|CCDS5684" P33993 7842741 MGI:1298398 RGD:1303018 MCM7 600592 +HGNC:16147 MCM8 minichromosome maintenance 8 homologous recombination repair factor protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "MGC4816|MGC12866|MGC119522|MGC119523|dJ967N21.5|REC" REC homolog (Drosophila) C20orf154 "chromosome 20 open reading frame 154|minichromosome maintenance complex component 8" MCM family 1085 2001-07-17 2003-07-09 2015-08-25 2015-08-25 84515 ENSG00000125885 OTTHUMG00000031822 uc002wmk.4 AJ439063 NM_032485 "CCDS13094|CCDS13095|CCDS63226|CCDS63227" Q9UJA3 12527764 MGI:1913884 RGD:1305218 MCM8 608187 423433 +HGNC:51230 MCM8-AS1 MCM8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p12.3 20p12.3 2014-08-08 2014-08-08 101929225 ENSG00000278719 OTTHUMG00000186611 AK058185 NR_110101 +HGNC:21484 MCM9 minichromosome maintenance 9 homologous recombination repair factor protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "MGC35304|dJ329L24.3|FLJ20170" "MCMDC1|C6orf61" "minichromosome maintenance deficient domain containing 1|chromosome 6 open reading frame 61|minichromosome maintenance complex component 9" MCM family 1085 2003-06-18 2007-04-04 2015-08-25 2015-08-25 254394 ENSG00000111877 OTTHUMG00000015468 uc063qzj.1 BC031658 NM_153255 "CCDS5121|CCDS56447" Q9NXL9 "16226853|15850810|16495042" MGI:1918817 RGD:1560557 MCM9 610098 448630 +HGNC:18043 MCM10 minichromosome maintenance 10 replication initiation factor protein-coding gene gene with protein product Approved 10p13 10p13 "PRO2249|CNA43|DNA43" "MCM10 minichromosome maintenance deficient 10 (S. cerevisiae)|minichromosome maintenance complex component 10" 2002-01-22 2015-08-25 2015-08-25 55388 ENSG00000065328 OTTHUMG00000017694 uc001ima.4 AB042719 NM_182751 "CCDS7095|CCDS7096" Q7L590 "11095689|17699597" MGI:1917274 RGD:1311330 MCM10 609357 +HGNC:25782 MCMBP minichromosome maintenance complex binding protein protein-coding gene gene with protein product Approved 10q26.11 10q26.11 "FLJ13081|MCM-BP" C10orf119 chromosome 10 open reading frame 119 2004-04-23 2011-01-05 2011-01-05 2016-10-05 79892 ENSG00000197771 OTTHUMG00000019159 uc001ler.4 BC007219 NM_024834 "CCDS7617|CCDS58099" Q9BTE3 17296731 MGI:1920977 RGD:1306730 MCMBP 610909 +HGNC:26368 MCMDC2 minichromosome maintenance domain containing 2 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 FLJ25692 C8orf45 chromosome 8 open reading frame 45 MCM family 1085 2005-08-04 2012-04-13 2012-04-13 2014-11-19 157777 ENSG00000178460 OTTHUMG00000157068 uc003xwz.4 BC034576 NM_173518 "CCDS6197|CCDS47868|CCDS47869" Q4G0Z9 MGI:3045334 RGD:1561068 MCMDC2 +HGNC:13356 MCOLN1 mucolipin 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "TRPML1|ML4|MLIV|MST080|MSTP080|TRPM-L1" Transient receptor potential cation channels 249 2000-09-19 2014-11-19 57192 ENSG00000090674 OTTHUMG00000182046 uc002mgo.4 AF249319 NM_020533 CCDS12180 Q9GZU1 16382100 MGI:1890498 RGD:1308953 MCOLN1 605248 123175 objectId:501 +HGNC:13357 MCOLN2 mucolipin 2 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "TRPML2|FLJ36691|TRP-ML2" Transient receptor potential cation channels 249 2003-04-04 2016-10-05 255231 ENSG00000153898 OTTHUMG00000009954 uc001dkm.4 AK094010 NM_153259 "CCDS30762|CCDS81347" Q8IZK6 16382100 MGI:1915529 RGD:1308884 MCOLN2 607399 objectId:502 +HGNC:13358 MCOLN3 mucolipin 3 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "TRPML3|FLJ11006|TRP-ML3" Transient receptor potential cation channels 249 2003-04-04 2014-11-19 55283 ENSG00000055732 OTTHUMG00000009955 uc001dkp.4 AF475085 NM_018298 "CCDS701|CCDS58009" Q8TDD5 16382100 MGI:1890500 RGD:1308420 MCOLN3 607400 objectId:503 +HGNC:6952 MCO entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-02-27 +HGNC:6954 MCPH1 microcephalin 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "FLJ12847|BRIT1" BRCT-repeat inhibitor of TERT expression 1 microcephaly, primary autosomal recessive 1 1998-02-11 2007-11-26 2014-11-18 79648 ENSG00000147316 OTTHUMG00000163618 uc003wqi.4 AK022909 NM_024596 "CCDS43689|CCDS55190|CCDS55191" Q8NEM0 "9683597|17925396" MGI:2443308 RGD:1560642 MCPH1 607117 123183 +HGNC:51655 MCPH1-AS1 MCPH1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8p23.1 08p23.1 2015-04-24 2015-04-24 100507530 ENSG00000249898 OTTHUMG00000163619 NR_125386 +HGNC:28007 MCRIP1 MAPK regulated corepressor interacting protein 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "GRAN2|MCRIP" granulin-2 FAM195B "family with sequence similarity 195, member B|family with sequence similarity 195 member B" 2009-09-10 2016-04-15 2016-05-24 2016-05-24 348262 ENSG00000225663 OTTHUMG00000177915 uc010wuy.3 NM_001093767 "CCDS45814|CCDS74178|CCDS74179" C9JLW8 "26184334|25728771" MGI:2384752 RGD:1311925 616514 +HGNC:14142 MCRIP2 MAPK regulated corepressor interacting protein 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC15416 "C16orf14|FAM195A" "chromosome 16 open reading frame 14|family with sequence similarity 195, member A|family with sequence similarity 195 member A" 2000-12-21 2016-04-15 2016-05-24 2016-05-24 84331 ENSG00000172366 OTTHUMG00000048042 uc002cic.2 BC001912 NM_138418 CCDS10415 Q9BUT9 "12477932|26184334" MGI:1915491 RGD:1592603 +HGNC:49629 MCRIP2P1 MAPK regulated corepressor interacting protein 2 pseudogene 1 pseudogene pseudogene Approved Xq26.2 Xq26.2 FAM195CP family with sequence similarity 195, member C, pseudogene 2014-01-24 2016-04-15 2016-05-24 2016-05-24 102388891 ENSG00000241418 OTTHUMG00000022416 NG_033826 PGOHUM00000304853 +HGNC:49631 MCRIP2P2 MAPK regulated corepressor interacting protein 2 pseudogene 2 pseudogene pseudogene Approved 1q25.3 01q25.3 "FAM195DP|MCRIP2P1" "family with sequence similarity 195, member D, pseudogene|MAPK regulated co-repressor interacting protein 2 pseudogene 2" 2014-01-28 2016-04-15 2016-05-24 2016-05-24 106480278 ENSG00000270920 OTTHUMG00000184457 NG_044089 PGOHUM00000296692 +HGNC:6960 MCRS1 microspherule protein 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "ICP22BP|MSP58|P78|MCRS2|INO80Q" INO80 complex subunit Q INO80 complex 595 1999-12-14 2014-11-19 10445 ENSG00000187778 OTTHUMG00000169620 uc001ruk.3 BC011794 NM_006337 "CCDS8787|CCDS31795|CCDS61118" Q96EZ8 "9765390|9654073" MGI:1858420 RGD:1311607 MCRS1 609504 +HGNC:6961 MCS Miles-Carpenter X-linked mental retardation syndrome phenotype phenotype only Approved Xq13-q22 Xq13-q22 MRXS4 X-linked mental retardation 103 1991-09-10 1993-01-19 4183 "2018061|1605216" 309605 +HGNC:26183 MCTP1 multiple C2 and transmembrane domain containing 1 protein-coding gene gene with protein product Approved 5q15 05q15 FLJ22344 multiple C2 domains, transmembrane 1 Multiple C2 and transmembrane domain containing 826 2005-11-07 2016-01-22 2016-01-22 79772 ENSG00000175471 OTTHUMG00000162742 uc003kkx.4 NM_024717 "CCDS34203|CCDS47247|CCDS75275" Q6DN14 15528213 MGI:1926021 RGD:1305199 MCTP1 616296 +HGNC:25636 MCTP2 multiple C2 and transmembrane domain containing 2 protein-coding gene gene with protein product Approved 15q26.2 15q26.2 "FLJ11175|FLJ33303" multiple C2 domains, transmembrane 2 Multiple C2 and transmembrane domain containing 826 2005-11-07 2016-06-28 2016-06-28 55784 ENSG00000140563 OTTHUMG00000171751 uc002btj.4 AK002037 NM_018349 "CCDS32338|CCDS53975|CCDS53976" Q6DN12 15528213 MGI:2685335 RGD:1562967 MCTP2 616297 369806 +HGNC:23357 MCTS1 MCTS1, re-initiation and release factor protein-coding gene gene with protein product Approved Xq24 Xq24 MCT-1 multiple copies in T-cell lymphoma-1 malignant T-cell amplified sequence 1 2003-11-17 2016-07-04 2016-07-04 28985 ENSG00000232119 OTTHUMG00000022303 uc004esx.4 AB034206 NM_014060 "CCDS14601|CCDS48160" Q9ULC4 "9766643|16982740|25043021" MGI:1916245 RGD:1566390 MCTS1 300587 +HGNC:49760 MCTS2P malignant T-cell amplified sequence 2, pseudogene pseudogene pseudogene Approved 20q11.21 20q11.21 "psiMCT-1|MCTS2" malignant T cell amplified sequence 2, pseudogene 2014-03-03 2015-11-13 2015-11-13 100101490 ENSG00000101898 OTTHUMG00000032177 NG_045217 "16815567|24402520" MGI:1913655 PGOHUM00000247641 +HGNC:23526 MCU mitochondrial calcium uniporter protein-coding gene gene with protein product Approved 10q22.1 10q22.1 FLJ46135 "C10orf42|CCDC109A" coiled-coil domain containing 109A 2003-11-21 2011-06-23 2011-06-23 2016-10-05 90550 ENSG00000156026 OTTHUMG00000018443 uc001jtc.3 BC034235 NM_138357 "CCDS7317|CCDS59218|CCDS59219" Q8NE86 "21685886|21685888" MGI:3026965 RGD:1589771 MCU 614197 +HGNC:26076 MCUB mitochondrial calcium uniporter dominant negative beta subunit protein-coding gene gene with protein product Approved 4q25 04q25 FLJ20647 CCDC109B coiled-coil domain containing 109B 2006-05-22 2016-06-10 2016-06-10 2016-06-10 55013 ENSG00000005059 OTTHUMG00000161103 uc011cfs.3 BC002633 NM_017918 CCDS3683 Q9NWR8 23900286 MGI:1914065 RGD:1305326 +HGNC:21097 MCUR1 mitochondrial calcium uniporter regulator 1 protein-coding gene gene with protein product Approved 6p23 06p23 FLJ20958 "C6orf79|CCDC90A" "chromosome 6 open reading frame 79|coiled-coil domain containing 90A" 2003-05-19 2013-03-13 2013-03-13 2014-11-19 63933 ENSG00000050393 OTTHUMG00000014279 uc003nbc.3 BC016850 NM_022102 CCDS35495 Q96AQ8 23178883 MGI:1923387 RGD:1307673 616952 +HGNC:21163 MDC1 mediator of DNA damage checkpoint 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "NFBD1|KIAA0170|Em:AB023051.5" mediator of DNA-damage checkpoint 1 2003-05-21 2015-11-16 2016-10-05 9656 ENSG00000137337 OTTHUMG00000031075 uc003nrg.5 D79992 NM_014641 CCDS34384 Q14676 "10975465|12607005" MGI:3525201 RGD:1559468 MDC1 607593 +HGNC:39764 MDC1-AS1 MDC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 MDC1-AS MDC1 antisense RNA 1 (non-protein coding) 2011-04-21 2012-08-15 2015-01-23 106478956 ENSG00000224328 OTTHUMG00000133551 uc063mty.1 NR_133647 25514464 +HGNC:6965 MDF1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:6967 MDFI MyoD family inhibitor protein-coding gene gene with protein product Approved 6p21.1 06p21.1 I-mfa inhibitor of MyoD family a 1997-10-17 2016-10-05 4188 ENSG00000112559 OTTHUMG00000014681 uc063okq.1 U78313 NM_005586 "CCDS4857|CCDS75451" Q99750 "9250874|17289077" MGI:107687 RGD:1560271 MDFI 604971 +HGNC:28870 MDFIC MyoD family inhibitor domain containing protein-coding gene gene with protein product Approved 7q31.1-q31.2 07q31.1-q31.2 HIC 2005-02-22 2016-10-11 29969 ENSG00000135272 OTTHUMG00000023647 uc064hfm.1 AF054589 NM_199072 "CCDS34737|CCDS55155" Q9P1T7 10671520 MGI:104611 RGD:1309532 MDFIC 614511 +HGNC:19267 MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "GPIM|MAMDC3" "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2002-10-08 2016-10-05 266727 ENSG00000112139 OTTHUMG00000014626 uc003onu.2 AF478693 XM_006715056 CCDS47417 Q8NFP4 "15922729|15019943" MGI:1922012 RGD:1307031 MDGA1 609626 +HGNC:19835 MDGA2 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 MAMDC1 MAM domain containing 1 "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2002-11-27 2007-04-03 2007-04-03 2016-10-05 161357 ENSG00000139915 OTTHUMG00000029429 uc001wwj.6 AI859192 NM_182830 "CCDS41948|CCDS45098" Q7Z553 15019943 MGI:2444706 RGD:735131 MDGA2 611128 +HGNC:6970 MDH1 malate dehydrogenase 1 protein-coding gene gene with protein product Approved 2p15 02p15 malate dehydrogenase 1, NAD (soluble) 2001-06-22 2015-11-13 2016-10-05 4190 ENSG00000014641 OTTHUMG00000129512 uc002scj.3 NM_001316374 "CCDS1874|CCDS56121|CCDS56122" P40925 MGI:97051 RGD:3072 MDH1 154200 1.1.1.37 +HGNC:17836 MDH1B malate dehydrogenase 1B protein-coding gene gene with protein product Approved 2q33.3 02q33.3 "FLJ25341|RP11-95H11" malate dehydrogenase 1B, NAD (soluble) 2002-01-29 2015-11-13 2015-11-13 130752 ENSG00000138400 OTTHUMG00000132918 uc002vbs.5 NM_001039845 "CCDS33365|CCDS63102|CCDS82561" Q5I0G3 MGI:1923918 RGD:1307874 MDH1B +HGNC:6971 MDH2 malate dehydrogenase 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 malate dehydrogenase 2, NAD (mitochondrial) 1986-01-01 2015-11-13 2015-11-13 4191 ENSG00000146701 OTTHUMG00000023827 uc003ueo.5 NM_005918 "CCDS5581|CCDS64691|CCDS75622" P40926 MGI:97050 RGD:619719 MDH2 154100 1.1.1.37 +HGNC:6972 MDK midkine (neurite growth-promoting factor 2) protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "MK|FLJ27379" NEGF2 1991-07-10 2014-11-19 4192 ENSG00000110492 OTTHUMG00000150315 uc031qav.2 NM_001012334 "CCDS7919|CCDS59226" P21741 8406506 MGI:96949 RGD:69073 MDK 162096 +HGNC:29917 MDM1 Mdm1 nuclear protein protein-coding gene gene with protein product Approved 12q15 12q15 "Mdm4, transformed 3T3 cell double minute 1, p53 binding protein (mouse)|Mdm1 nuclear protein homolog (mouse)" 2004-12-20 2015-06-19 2015-06-19 56890 ENSG00000111554 OTTHUMG00000169136 uc001stz.3 AF007130 NM_020128 "CCDS8983|CCDS44938|CCDS55841|CCDS55842" Q8TC05 "8619474|9110174" MGI:96951 RGD:1561092 MDM1 613813 +HGNC:6973 MDM2 MDM2 proto-oncogene protein-coding gene gene with protein product Approved 12q15 12q15 "HDM2|MGC5370" "mouse double minute 2, human homolog of; p53-binding protein|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse)|Mdm2 p53 binding protein homolog (mouse)|MDM2 proto-oncogene, E3 ubiquitin protein ligase" Zinc fingers RANBP2-type 89 1993-12-10 2016-03-14 2016-10-05 4193 ENSG00000135679 OTTHUMG00000142827 uc001sui.6 NM_006880 "CCDS8986|CCDS61189" Q00987 "1614537|16905769" MGI:96952 RGD:1305332 MDM2 164785 321350 +HGNC:6974 MDM4 MDM4, p53 regulator protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "MDMX|HDMX" "mouse double minute 4, human homolog of; p53-binding protein|Mdm4, transformed 3T3 cell double minute 4, p53 binding protein (mouse)|Mdm4 p53 binding protein homolog (mouse)" 1997-09-05 2014-03-03 2016-10-05 4194 ENSG00000198625 OTTHUMG00000035877 uc001hba.4 AF007111 NM_002393 "CCDS1447|CCDS55674|CCDS55675|CCDS60396|CCDS73007|CCDS73008|CCDS73009" O15151 "9226370|14660608" MGI:107934 RGD:1309306 MDM4 602704 +HGNC:18302 MDN1 midasin AAA ATPase 1 protein-coding gene gene with protein product Approved 6q15 06q15 "KIAA0301|Rea1" MDN1, midasin homolog (yeast) AAA ATPases 413 2002-03-12 2015-06-26 2015-08-25 23195 ENSG00000112159 OTTHUMG00000015213 uc003pnn.2 AF503925 XM_011535635 CCDS5024 Q9NU22 12102729 MGI:1926159 RGD:1306394 MDN1 +HGNC:28781 MDP1 magnesium dependent phosphatase 1 protein-coding gene gene with protein product Approved 14q12 14q12 "MGC5987|FN6Pase" fructosamine-6-phosphatase HAD Asp-based protein phosphatases 702 2009-07-09 2016-06-08 2016-06-08 145553 ENSG00000213920 OTTHUMG00000133477 uc001wnl.3 BC046912 NM_138476 "CCDS9620|CCDS55908" Q86V88 "10889041|16670083" MGI:1915131 RGD:1311147 MDP1 +HGNC:6978 MDRV muscular dystrophy, with rimmed vacuoles phenotype phenotype only Approved 19p13.3 19p13.3 1997-07-11 1998-05-11 4195 601846 +HGNC:29633 MDS2 myelodysplastic syndrome 2 translocation associated protein-coding gene gene with protein product Approved 1p36 01p36 2005-05-24 2014-11-19 259283 ENSG00000197880 OTTHUMG00000002927 uc057dgf.1 AJ310434 NM_148895 Q8NDY4 12203785 MDS2 607305 +HGNC:6983 ME1 malic enzyme 1 protein-coding gene gene with protein product Approved 6q14.2 06q14.2 "malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))|NADP-dependent malic enzyme" malic enzyme 1, NADP(+)-dependent, cytosolic 2001-06-22 2016-04-06 2016-10-05 4199 ENSG00000065833 OTTHUMG00000015111 uc003pjy.4 X77244 XM_011535836 CCDS34492 P48163 8187880 MGI:97043 RGD:3074 ME1 154250 1.1.1.40 +HGNC:6984 ME2 malic enzyme 2 protein-coding gene gene with protein product Approved 18q21.2 18q21.2 "NAD-dependent malic enzyme, mitochondrial|malate dehydrogenase (oxaloacetate-decarboxylating)" malic enzyme 2, NAD(+)-dependent, mitochondrial 2001-06-22 2016-04-06 2016-10-05 4200 ENSG00000082212 OTTHUMG00000132694 uc002ley.4 M55905 NM_002396 "CCDS11948|CCDS54187" P23368 1993674 MGI:2147351 RGD:1310321 ME2 154270 1.1.1.38 +HGNC:49809 ME2P1 malic enzyme 2 pseudogene 1 pseudogene pseudogene Approved 9p21.1 09p21.1 malic enzyme 2, NAD(+)-dependent, mitochondrial pseudogene 1 2014-03-06 2016-04-29 2016-04-29 286239 ENSG00000230097 OTTHUMG00000019724 NG_016134 PGOHUM00000235999 +HGNC:6985 ME3 malic enzyme 3 protein-coding gene gene with protein product Approved 11q14.2 11q14.2 malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)) malic enzyme 3, NADP(+)-dependent, mitochondrial 2000-01-12 2016-04-29 2016-04-29 10873 ENSG00000151376 OTTHUMG00000167217 uc009yvk.4 X79440 XM_017017136 CCDS8277 Q16798 7818469 MGI:1916679 RGD:1311070 ME3 604626 1.1.1.40 +HGNC:6986 MEA1 male-enhanced antigen 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 MEA male-enhanced antigen 1995-08-29 2005-06-02 2005-06-02 2016-10-05 4201 ENSG00000124733 OTTHUMG00000014717 uc003otk.4 XM_005249121 CCDS4879 Q16626 "2813404|12444059" MGI:96957 RGD:1597751 MEA1 143170 +HGNC:25674 MEAF6 MYST/Esa1 associated factor 6 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "NY-SAR-91|FLJ11730|Eaf6|CENP-28" "Esa1p-associated factor 6 homolog (S. cerevisiae)|centromere protein 28" C1orf149 "chromosome 1 open reading frame 149|MYST/Esa1-associated factor 6" 2005-07-13 2009-07-13 2016-03-09 2016-10-05 64769 ENSG00000163875 OTTHUMG00000004223 uc001cbe.4 BC016328 NM_022756 "CCDS418|CCDS59195|CCDS59196" Q9HAF1 "8619474|9110174|12963728|14966270|16387653" MGI:1917338 RGD:1310440 MEAF6 611001 +HGNC:42660 MEAF6P1 MYST/Esa1-associated factor 6 pseudogene 1 pseudogene pseudogene Approved 2q34 02q34 2011-08-12 2011-08-12 100874045 ENSG00000240286 OTTHUMG00000154706 NG_032529 PGOHUM00000241097 +HGNC:3498 MECOM MDS1 and EVI1 complex locus protein-coding gene gene with protein product Approved 3q26.2 03q26.2 "MDS1-EVI1|PRDM3" PR domain 3 "MDS1|EVI1" "myelodysplasia syndrome 1|ecotropic viral integration site 1" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 1990-07-10 2009-08-07 2009-08-07 2016-01-26 2122 ENSG00000085276 OTTHUMG00000158596 uc003ffi.3 "S82592|AF164154" "NM_005241|NM_004991" "CCDS3205|CCDS54669|CCDS54670" "Q03112|Q13465" "2115646|8171026|8643684" MGI:95457 RGD:1310997 MECOM 165215 160253 +HGNC:6990 MECP2 methyl-CpG binding protein 2 protein-coding gene gene with protein product Approved Xq28 Xq28 "RTT|MRX16|MRX79" "mental retardation, X-linked 16|mental retardation, X-linked 79|Rett syndrome|methyl CpG binding protein 2 (Rett syndrome)|methyl CpG binding protein 2" "X-linked mental retardation|Methyl-CpG binding domain containing" "103|1025" 1996-09-03 2015-11-13 2016-10-12 4204 ENSG00000169057 OTTHUMG00000024229 uc004fjv.3 AF158180 NM_004992 "CCDS14741|CCDS48193" P51608 "1606614|10508514" MGI:99918 RGD:3075 "RettBASE|http://mecp2.chw.edu.au/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MECP2|LRG_764|http://www.lrg-sequence.org/LRG/LRG_764" MECP2 300005 123186 +HGNC:19691 MECR mitochondrial trans-2-enoyl-CoA reductase protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "CGI-63|NRBF1|FASN2B" "nuclear receptor binding factor 1|mitochondrial 2-enoyl thioester reductase" 2005-05-24 2014-11-19 51102 ENSG00000116353 OTTHUMG00000059082 uc001brq.3 NM_016011 "CCDS30659|CCDS30660" Q9BV79 "9795230|12654921" MGI:1349441 RGD:3208 MECR 608205 1.3.1.38 +HGNC:9234 MED1 mediator complex subunit 1 protein-coding gene gene with protein product Approved 17q12 17q12 "PBP|TRAP220|RB18A|DRIP230|CRSP200|CRSP1" "TRIP2|PPARGBP|PPARBP" PPAR binding protein Mediator complex 1061 1998-07-15 2007-07-30 2007-07-30 2014-11-19 5469 ENSG00000125686 OTTHUMG00000133216 uc002hrv.5 L40366 NM_004774 CCDS11336 Q15648 "9325263|10485914" MGI:1100846 RGD:1559552 MED1 604311 +HGNC:17903 MED4 mediator complex subunit 4 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "HSPC126|DRIP36|TRAP36" VDRIP "vitamin D receptor interacting protein|mediator of RNA polymerase II transcription, subunit 4 homolog (S. cerevisiae)" Mediator complex 1061 2003-05-23 2004-11-09 2007-07-30 2016-10-05 29079 ENSG00000136146 OTTHUMG00000016891 uc001vby.3 AF161475 NM_014166 "CCDS9408|CCDS59241" Q9NPJ6 "10235266|11042152" MGI:1914631 RGD:1306671 MED4 605718 +HGNC:39213 MED4-AS1 MED4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 MED4-AS "MED4 antisense RNA (non-protein coding)|MED4 antisense RNA 1 (non-protein coding)" 2010-11-23 2010-11-25 2012-08-15 2012-10-12 100873965 ENSG00000229111 OTTHUMG00000016893 uc031qlm.2 NR_046511 +HGNC:19970 MED6 mediator complex subunit 6 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 NY-REN-28 mediator of RNA polymerase II transcription, subunit 6 homolog (S. cerevisiae) Mediator complex 1061 2002-12-09 2007-07-30 2016-10-05 10001 ENSG00000133997 OTTHUMG00000171252 uc001xmf.5 BC004106 NM_005466 "CCDS9805|CCDS61483|CCDS61484|CCDS73649" O75586 "9234719|9671713" MGI:1917042 RGD:1310296 MED6 602984 +HGNC:45164 MED6P1 mediator complex subunit 6 pseudogene 1 pseudogene pseudogene Approved 10q23.31 10q23.31 2013-02-28 2013-02-28 100128990 ENSG00000227905 OTTHUMG00000018689 NG_022151 PGOHUM00000238574 +HGNC:2378 MED7 mediator complex subunit 7 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 CRSP33 CRSP9 cofactor required for Sp1 transcriptional activation, subunit 9, 33kDa Mediator complex 1061 1999-07-21 2007-07-30 2007-07-30 2014-11-19 9443 ENSG00000155868 OTTHUMG00000130243 uc003lwm.5 AF104251 NM_004270 CCDS4334 O43513 9989412 MGI:1913463 RGD:6494481 MED7 605045 +HGNC:19971 MED8 mediator complex subunit 8 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "MGC17544|MGC19641|ARC32" mediator of RNA polymerase II transcription, subunit 8 homolog (S. cerevisiae) Mediator complex 1061 2002-12-09 2007-07-30 2016-10-05 112950 ENSG00000159479 OTTHUMG00000007421 uc001cjg.6 "AF521562|BC010543" NM_052877 "CCDS486|CCDS487|CCDS60108" Q96G25 "12149480|9671713" MGI:1915269 MED8 607956 +HGNC:25487 MED9 mediator complex subunit 9 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "FLJ10193|MED25" mediator of RNA polymerase II transcription, subunit 9 homolog (S. cerevisiae) Mediator complex 1061 2004-11-09 2007-07-30 2014-11-19 55090 ENSG00000141026 OTTHUMG00000059293 uc002grh.2 BC000647 NM_018019 CCDS11184 Q9NWA0 11997338 MGI:2183151 RGD:1563669 MED9 609878 +HGNC:28760 MED10 mediator complex subunit 10 protein-coding gene gene with protein product Approved 5p15.31 05p15.31 "TRG20|L6|MGC5309|NUT2" NUT2 homolog (S. cerevisiae) mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae) Mediator complex 1061 2006-04-05 2007-07-30 2015-08-25 84246 ENSG00000133398 OTTHUMG00000161682 uc003jdo.4 NM_032286 CCDS34134 Q9BTT4 "15657623|15175163" MGI:106331 RGD:1310128 MED10 612382 +HGNC:32687 MED11 mediator complex subunit 11 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "HSPC296|MGC88387" mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae) Mediator complex 1061 2006-04-05 2007-07-30 2015-08-25 400569 ENSG00000161920 OTTHUMG00000177896 uc002fyp.4 AF161414 NM_001001683 "CCDS32533|CCDS76920" Q9P086 "15175163|12584197" MGI:1913422 RGD:1563202 MED11 612383 +HGNC:11957 MED12 mediator complex subunit 12 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "CAGH45|HOPA|OPA1|TRAP230|KIAA0192|OKS" "TNRC11|FGS1" "trinucleotide repeat containing 11 (THR-associated protein, 230kDa subunit)|mediator of RNA polymerase II transcription, subunit 12 homolog (S. cerevisiae)|FG syndrome 1" "Trinucleotide repeat containing|Mediator complex" "775|1061" 2000-01-27 2004-11-26 2007-07-30 2016-10-05 9968 ENSG00000184634 OTTHUMG00000021788 uc004dyy.4 U80742 NM_005120 CCDS43970 Q93074 "9225980|10198638|17334363|20507344" MGI:1926212 RGD:1585896 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MED12 MED12 300188 138486 +HGNC:16050 MED12L mediator complex subunit 12 like protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "KIAA1635|TNRC11L|TRALPUSH|TRALP" "mediator of RNA polymerase II transcription, subunit 12 homolog (S. cerevisiae)-like|mediator complex subunit 12-like" Mediator complex 1061 2004-11-24 2015-11-13 2015-11-13 116931 ENSG00000144893 OTTHUMG00000159844 uc003eyp.4 "AB046855|AF388364" NM_053002 CCDS33876 Q86YW9 11524702 MGI:2139916 RGD:1592212 MED12L 611318 +HGNC:22474 MED13 mediator complex subunit 13 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 "KIAA0593|TRAP240" THRAP1 thyroid hormone receptor associated protein 1 Mediator complex 1061 2004-03-10 2007-07-30 2007-07-30 2016-01-15 9969 ENSG00000108510 OTTHUMG00000179251 uc002izo.3 AB011165 NM_005121 CCDS42366 Q9UHV7 1019863 MGI:3029632 RGD:1304829 MED13 603808 +HGNC:22962 MED13L mediator complex subunit 13 like protein-coding gene gene with protein product Approved 12q24.21 12q24.21 "KIAA1025|TRAP240L" THRAP2 "thyroid hormone receptor associated protein 2|mediator complex subunit 13-like" Mediator complex 1061 2004-01-30 2007-07-30 2016-03-10 2016-10-05 23389 ENSG00000123066 OTTHUMG00000169404 uc001tvw.4 AB028948 XM_011538080 CCDS9177 Q71F56 MGI:2670178 RGD:1305884 MED13L 608771 159456 +HGNC:38733 MED13P1 mediator complex subunit 13 pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 2010-07-29 2014-11-18 100499481 ENSG00000236131 OTTHUMG00000036619 NG_023546 PGOHUM00000233965 +HGNC:2370 MED14 mediator complex subunit 14 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "EXLM1|CRSP150|TRAP170|RGR1|CSRP" "CXorf4|CRSP2" cofactor required for Sp1 transcriptional activation, subunit 2, 150kDa Mediator complex 1061 1998-10-02 2007-07-30 2007-07-30 2015-08-25 9282 ENSG00000180182 OTTHUMG00000024107 uc004dex.5 AB006651 NM_004229 CCDS14254 O60244 "9989412|9598311" MGI:1349442 RGD:1560170 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MED14 MED14 300182 +HGNC:40162 MED14OS MED14 opposite strand other unknown Approved Xp11.4 Xp11.4 MED14-AS1 "MED14 antisense RNA 1 (non-protein coding)|MED14 antisense RNA 1" 2011-07-29 2014-02-10 2014-02-10 2014-11-19 100873985 ENSG00000234636 OTTHUMG00000024106 NM_001289773 +HGNC:2371 MED14P1 mediator complex subunit 14 pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 "CXorf4P|CRSP2P|MED14P" "cofactor required for Sp1 transcriptional activation, subunit 2, pseudogene|mediator complex subunit 14 pseudogene" 1999-05-17 2010-02-25 2010-02-25 2016-10-05 359791 ENSG00000233774 OTTHUMG00000036467 NG_002807 +HGNC:14248 MED15 mediator complex subunit 15 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "TIG-1|CAG7A|Arc105" "TNRC7|PCQAP" "trinucleotide repeat containing 7|PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein" "Trinucleotide repeat containing|Mediator complex" "775|1061" 2001-07-13 2007-07-30 2007-07-30 2016-10-05 51586 ENSG00000099917 OTTHUMG00000150810 uc002zsq.4 AF056191 NM_015889 "CCDS13781|CCDS33602|CCDS74824|CCDS77653" Q96RN5 "11024300|11414760|15175163" MGI:2137379 RGD:1307560 MED15 607372 +HGNC:19271 MED15P1 mediator complex subunit 15 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 "PCQAPP|MED15P" "PCQAP pseudogene|mediator complex subunit 15 pseudogene" 2003-01-13 2010-02-25 2010-02-25 2013-06-03 326615 ENSG00000257853 OTTHUMG00000170337 NG_002605 PGOHUM00000250102 +HGNC:48652 MED15P3 mediator complex subunit 15 pseudogene 3 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-06-03 2013-06-03 106481657 ENSG00000226831 OTTHUMG00000153598 NG_045203 PGOHUM00000240325 +HGNC:48653 MED15P4 mediator complex subunit 15 pseudogene 4 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-06-03 2013-06-03 100127989 ENSG00000224679 OTTHUMG00000153622 NG_023317 PGOHUM00000240331 +HGNC:48654 MED15P5 mediator complex subunit 15 pseudogene 5 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-06-03 2013-06-03 391436 ENSG00000236595 OTTHUMG00000153750 NG_021585 PGOHUM00000240917 +HGNC:48655 MED15P6 mediator complex subunit 15 pseudogene 6 pseudogene pseudogene Approved 14q11.2 14q11.2 2013-06-03 2013-06-03 100996438 ENSG00000257162 OTTHUMG00000170543 PGOHUM00000248026 +HGNC:48656 MED15P7 mediator complex subunit 15 pseudogene 7 pseudogene pseudogene Approved 22q11.1 22q11.1 2013-06-03 2013-06-03 100996466 ENSG00000234381 OTTHUMG00000140336 PGOHUM00000250332 +HGNC:48657 MED15P8 mediator complex subunit 15 pseudogene 8 pseudogene pseudogene Approved 2q21.1 02q21.1 2013-06-03 2013-06-03 106480229 ENSG00000248796 OTTHUMG00000153535 NG_043725 PGOHUM00000250446 +HGNC:44130 MED15P9 mediator complex subunit 15 pseudogene 9 pseudogene pseudogene Approved 2q21.1 02q21.1 "CCDC74B-AS1|MED15P2" "CCDC74B antisense RNA 1 (non-protein coding)|CCDC74B antisense RNA 1|mediator complex subunit 15 pseudogene 2" 2012-06-23 2013-08-13 2013-08-13 2015-02-04 285103 ENSG00000223760 OTTHUMG00000153627 BC036597 NR_033903 +HGNC:17556 MED16 mediator complex subunit 16 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "DRIP92|TRAP95" THRAP5 thyroid hormone receptor associated protein 5 "WD repeat domain containing|Mediator complex" "362|1061" 2004-01-30 2007-07-30 2007-07-30 2014-11-19 10025 ENSG00000175221 OTTHUMG00000181841 uc002lqd.2 AF121228 NM_005481 CCDS12047 Q9Y2X0 "10235266|10198638" MGI:2158394 RGD:1308001 MED16 604062 +HGNC:2375 MED17 mediator complex subunit 17 protein-coding gene gene with protein product Approved 11q21 11q21 "CRSP77|TRAP80|DRIP80" CRSP6 "cofactor required for Sp1 transcriptional activation, subunit 6 (77kD)|cofactor required for Sp1 transcriptional activation, subunit 6, 77kDa" Mediator complex 1061 1999-07-21 2007-07-30 2007-07-30 2014-11-19 9440 ENSG00000042429 OTTHUMG00000167497 uc001pem.5 AF104254 NM_004268 CCDS8295 Q9NVC6 "9989412|10198638" MGI:2182585 RGD:1311120 MED17 603810 407507 +HGNC:25944 MED18 mediator complex subunit 18 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "FLJ20045|p28b" mediator of RNA polymerase II transcription, subunit 18 homolog (S. cerevisiae) Mediator complex 1061 2004-11-09 2007-07-30 2014-11-19 54797 ENSG00000130772 OTTHUMG00000003537 uc001bpt.5 BC002694 NM_017638 CCDS322 Q9BUE0 15175163 MGI:1914469 RGD:1592757 MED18 612384 +HGNC:29600 MED19 mediator complex subunit 19 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 LCMR1 mediator of RNA polymerase II transcription, subunit 19 homolog (S. cerevisiae) Mediator complex 1061 2004-11-09 2007-07-30 2014-11-19 219541 ENSG00000156603 OTTHUMG00000167199 uc001nla.2 AY148462 NM_153450 CCDS7966 A0JLT2 9417904 MGI:1914234 RGD:1311926 MED19 612385 +HGNC:16840 MED20 mediator complex subunit 20 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "DKFZp586D2223|PRO0213" TRFP Trf (TATA binding protein-related factor)-proximal homolog (Drosophila) Mediator complex 1061 2003-08-26 2007-07-30 2007-07-30 2014-11-19 9477 ENSG00000124641 OTTHUMG00000014689 uc003ork.4 AF097725 NM_004275 "CCDS4862|CCDS83085" Q9H944 "9933582|15175163" MGI:1929648 RGD:1306415 MED20 612915 +HGNC:11473 MED21 mediator complex subunit 21 protein-coding gene gene with protein product Approved 12p12 12p12 SRB7 SURB7 "SRB7 (suppressor of RNA polymerase B, yeast) homolog|SRB7 suppressor of RNA polymerase B homolog (yeast)" Mediator complex 1061 1999-03-10 2007-07-30 2007-07-30 2014-11-19 9412 ENSG00000152944 OTTHUMG00000169276 uc001rhp.3 U46837 NM_004264 CCDS8711 Q13503 8598913 MGI:1347064 RGD:1309836 MED21 603800 +HGNC:11477 MED22 mediator complex subunit 22 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 Med24 SURF5 surfeit 5 Mediator complex 1061 1993-06-23 2007-07-30 2007-07-30 2016-10-05 6837 ENSG00000148297 OTTHUMG00000020869 uc064wue.1 NM_133640 "CCDS6963|CCDS6964" Q15528 "8499913|15175163" MGI:98446 RGD:1564893 MED22 185641 +HGNC:2372 MED23 mediator complex subunit 23 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "CRSP130|DRIP130|Sur2" CRSP3 cofactor required for Sp1 transcriptional activation, subunit 3, 130kDa Mediator complex 1061 1999-07-21 2007-07-30 2007-08-08 2016-10-05 9439 ENSG00000112282 OTTHUMG00000015565 uc003qcs.3 AF104255 XM_005267223 "CCDS5146|CCDS5147|CCDS59039" Q9ULK4 9989412 MGI:1917458 RGD:1307671 MED23 605042 279764 +HGNC:22963 MED24 mediator complex subunit 24 protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "TRAP100|KIAA0130|DRIP100|CRSP100|MED5" "THRAP4|CRSP4" "thyroid hormone receptor associated protein 4|cofactor required for Sp1 transcriptional activation, subunit 4, 100kDa" Mediator complex 1061 2004-01-30 2007-07-30 2007-07-30 2016-10-05 9862 ENSG00000008838 OTTHUMG00000133329 uc002htt.4 AF055995 NM_014815 "CCDS11359|CCDS42315|CCDS82117" O75448 MGI:1344385 RGD:1564565 MED24 607000 +HGNC:28845 MED25 mediator complex subunit 25 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 "ARC92|ACID1|TCBAP0758|DKFZp434K0512" mediator of RNA polymerase II transcription, subunit 25 homolog (S. cerevisiae) Mediator complex 1061 2004-11-09 2007-07-30 2016-10-12 81857 ENSG00000104973 OTTHUMG00000183161 uc002ppw.3 AL136746 NM_030973 CCDS33075 Q71SY5 "9110174|11230166" MGI:1922863 RGD:1305137 LRG_368|http://www.lrg-sequence.org/LRG/LRG_368 MED25 610197 167742 +HGNC:2376 MED26 mediator complex subunit 26 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 CRSP70 CRSP7 cofactor required for Sp1 transcriptional activation, subunit 7, 70kDa Mediator complex 1061 1999-07-21 2007-07-30 2007-07-30 2014-11-19 9441 ENSG00000105085 OTTHUMG00000182433 uc002nen.2 AF104253 NM_004831 CCDS12347 O95402 9989412 MGI:1917875 RGD:1309524 MED26 605043 +HGNC:2377 MED27 mediator complex subunit 27 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "TRAP37|CRSP34|MED3" CRSP8 cofactor required for Sp1 transcriptional activation, subunit 8, 34kDa Mediator complex 1061 1999-07-21 2007-07-30 2007-07-30 2015-08-25 9442 ENSG00000160563 OTTHUMG00000020833 uc004cbe.3 AF104252 NM_004269 "CCDS6945|CCDS59153|CCDS69689" Q6P2C8 9989412 MGI:1916225 RGD:1564993 MED27 605044 +HGNC:24628 MED28 mediator complex subunit 28 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "EG1|DKFZP434N185|magicin" mediator of RNA polymerase II transcription, subunit 28 homolog (S. cerevisiae) Mediator complex 1061 2004-11-09 2007-07-30 2016-10-05 80306 ENSG00000118579 OTTHUMG00000161980 uc003gpk.2 AF317678 NM_025205 CCDS33963 Q9H204 "11779215|15467741" MGI:1914249 RGD:1305875 MED28 610311 +HGNC:45078 MED28P1 mediator complex subunit 28 pseudogene 1 pseudogene pseudogene Approved 10q22.1 10q22.1 2013-02-07 2013-06-06 100420207 ENSG00000214875 OTTHUMG00000018364 NG_025514 PGOHUM00000238829 +HGNC:45079 MED28P2 mediator complex subunit 28 pseudogene 2 pseudogene pseudogene Approved 3q24 03q24 2013-02-07 2013-02-07 106480445 ENSG00000240511 OTTHUMG00000159549 NG_043416 PGOHUM00000237810 +HGNC:45080 MED28P3 mediator complex subunit 28 pseudogene 3 pseudogene pseudogene Approved 2q32.1 02q32.1 2013-02-07 2013-02-07 100131051 ENSG00000227692 OTTHUMG00000154254 NG_021593 PGOHUM00000241040 +HGNC:45081 MED28P4 mediator complex subunit 28 pseudogene 4 pseudogene pseudogene Approved Xp11.3 Xp11.3 2013-02-07 2013-02-07 100130359 ENSG00000224701 OTTHUMG00000021412 NG_022594 PGOHUM00000241259 +HGNC:45082 MED28P5 mediator complex subunit 28 pseudogene 5 pseudogene pseudogene Approved 11q21 11q21 2013-02-07 2013-02-07 106479053 ENSG00000255205 OTTHUMG00000167667 NG_044525 PGOHUM00000242434 +HGNC:45083 MED28P6 mediator complex subunit 28 pseudogene 6 pseudogene pseudogene Approved 15q25.3 15q25.3 2013-02-07 2013-02-07 106480808 ENSG00000259183 OTTHUMG00000171833 NG_045772 PGOHUM00000246918 +HGNC:45084 MED28P7 mediator complex subunit 28 pseudogene 7 pseudogene pseudogene Approved 20p11.21 20p11.21 2013-02-07 2016-10-05 729327 ENSG00000236542 OTTHUMG00000032128 NG_021979 PGOHUM00000247476 +HGNC:45085 MED28P8 mediator complex subunit 28 pseudogene 8 pseudogene pseudogene Approved 1p31.1 01p31.1 2013-02-07 2013-02-07 101060144 ENSG00000242598 OTTHUMG00000009841 PGOHUM00000251067 +HGNC:23074 MED29 mediator complex subunit 29 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "DKFZp434H247|MED2" IXL intersex-like (Drosophila) Mediator complex 1061 2004-07-15 2007-07-30 2007-07-30 2015-08-11 55588 ENSG00000063322 OTTHUMG00000182969 uc002olf.4 "AL137304|AY729650" XM_290829 CCDS33021 Q9NX70 15555573 MGI:1914474 RGD:1311009 MED29 612914 +HGNC:23032 MED30 mediator complex subunit 30 protein-coding gene gene with protein product Approved 8q24.11 08q24.11 TRAP25 THRAP6 thyroid hormone receptor associated protein 6 Mediator complex 1061 2004-01-30 2007-07-30 2007-07-30 2014-11-19 90390 ENSG00000164758 OTTHUMG00000164920 uc003yoj.4 AY083305 NM_080651 "CCDS6323|CCDS64959" Q96HR3 MGI:1917040 RGD:1309369 MED30 610237 +HGNC:24260 MED31 mediator complex subunit 31 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "CGI-125|Soh1" mediator of RNA polymerase II transcription, subunit 31 homolog (S. cerevisiae) Mediator complex 1061 2004-11-24 2007-07-30 2014-11-19 51003 ENSG00000108590 OTTHUMG00000102051 uc002gdg.5 AF151883 NM_016060 CCDS11078 Q9Y3C7 10810093 MGI:1914529 RGD:1309457 MED31 +HGNC:25926 MEDAG mesenteric estrogen dependent adipogenesis protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "FLJ14834|AWMS3|MEDA-4" "mesenteric estrogen-dependent adipose 4|activated in W/Wv mouse stomach 3 homolog" C13orf33 "chromosome 13 open reading frame 33|mesenteric estrogen-dependent adipogenesis" 2006-08-08 2012-09-26 2016-04-05 2016-04-05 84935 ENSG00000102802 OTTHUMG00000016679 uc001uth.5 AB055407 NM_032849 CCDS9338 Q5VYS4 22510272 MGI:1917967 RGD:1307396 +HGNC:6993 MEF2A myocyte enhancer factor 2A protein-coding gene gene with protein product Approved 15q26 15q26 "RSRFC4|RSRFC9" "Myocyte enhancer factor 2 proteins|MADS box family" "649|1086" 1995-02-08 2007-04-24 2015-09-03 4205 ENSG00000068305 OTTHUMG00000171937 uc010bos.4 XM_011521571 "CCDS45362|CCDS45363|CCDS53978|CCDS58401|CCDS81920" Q02078 1516833 MGI:99532 RGD:1359360 MEF2A 600660 423048 +HGNC:6994 MEF2AP1 myocyte enhancer factor 2A pseudogene 1 pseudogene pseudogene Approved 1q25.2 01q25.2 MEF2AP myocyte enhancer factor 2A pseudogene 1996-04-12 2010-02-25 2010-02-25 2016-10-05 4206 ENSG00000224620 OTTHUMG00000035267 U44888 NG_003072 +HGNC:6995 MEF2B myocyte enhancer factor 2B protein-coding gene gene with protein product Approved 19p13.11 19p13.11 RSRFR2 "Myocyte enhancer factor 2 proteins|MADS box family" "649|1086" 1995-02-08 2007-04-24 2014-11-19 100271849 ENSG00000213999 OTTHUMG00000161595 uc002nlk.3 X63380 NM_005919 "CCDS12394|CCDS46024" Q02080 "1516833|8575763" MGI:104526 RGD:1561733 MEF2B 600661 +HGNC:49883 MEF2BNBP1 MEF2B neighbor pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 2014-03-18 2014-03-18 100128109 ENSG00000256844 OTTHUMG00000168903 NG_011617 PGOHUM00000250989 +HGNC:6996 MEF2C myocyte enhancer factor 2C protein-coding gene gene with protein product Approved 5q14.3 05q14.3 "Myocyte enhancer factor 2 proteins|MADS box family" "649|1086" 1995-02-08 2007-04-24 2015-08-25 4208 ENSG00000081189 OTTHUMG00000162634 uc003kjl.4 AL833268 NM_002397 "CCDS47244|CCDS47245|CCDS54877|CCDS54878|CCDS78030|CCDS78034" Q06413 8455629 MGI:99458 RGD:1563119 MEF2C 600662 232232 +HGNC:48908 MEF2C-AS1 MEF2C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q14.3 05q14.3 2013-07-01 2014-01-06 101929423 ENSG00000248309 OTTHUMG00000162630 CD702404 NR_136220 23801869 +HGNC:6997 MEF2D myocyte enhancer factor 2D protein-coding gene gene with protein product Approved 1q22 01q22 "Myocyte enhancer factor 2 proteins|MADS box family" "649|1086" 1995-02-08 2007-04-24 2016-10-05 4209 ENSG00000116604 OTTHUMG00000033095 uc001fpc.5 BC054520 NM_005920 "CCDS1143|CCDS60304" Q14814 8269842 MGI:99533 RGD:621489 MEF2D 600663 +HGNC:6998 MEFV Mediterranean fever protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FMF|TRIM20" "pyrin|marenostrin" MEF "Tripartite motif containing|Pyrin domain containing" "59|994" 1989-10-30 2016-10-12 4210 ENSG00000103313 OTTHUMG00000129324 uc002cun.1 AF018080 NM_000243 "CCDS10498|CCDS55981" O15553 "9288094|27066000" MGI:1859396 RGD:61889 "INFEVERS: The repertory of Familial Mediterranean Fever (FMF) and Hereditary Inflammatory Disorders Mutations|http://fmf.igh.cnrs.fr/infevers/|LRG_190|http://www.lrg-sequence.org/LRG/LRG_190" MEFV 608107 123191 +HGNC:14575 MEG3 maternally expressed 3 (non-protein coding) non-coding RNA RNA, long non-coding Approved 14q32.2 14q32.2 "GTL2|NCRNA00023|LINC00023|onco-lncRNA-83" "non-protein coding RNA 23|long intergenic non-protein coding RNA 23" maternally expressed 3 Long non-coding RNAs 788 2001-02-08 2008-08-14 2015-07-29 55384 ENSG00000214548 OTTHUMG00000029052 uc059fga.1 AB032607 NR_002766 Q9UI56 "10759892|23790166" MGI:1202886 605636 159158 MEG3 +HGNC:14574 MEG8 maternally expressed 8 (non-protein coding) non-coding RNA RNA, long non-coding Approved 14q32.31 14q32.31 "NCRNA00024|Irm|Rian|Bsr|LINC00024" "non-protein coding RNA 24|RNA Imprinted and Accumulated in Nucleus|Imprinted RNA near Meg3/Gtl2|long intergenic non-protein coding RNA 24" maternally expressed (in Callipyge) 8 Long non-coding RNAs 788 2001-02-21 2008-08-14 2016-10-12 79104 ENSG00000258399 OTTHUMG00000171625 uc059fgr.1 "CA396130|AW026953" NR_024149 "11481034|11337479|12045206" MGI:1922995 LRG_1058|http://www.lrg-sequence.org/LRG/LRG_1058 613648 Rian +HGNC:43874 MEG9 maternally expressed 9 (non-protein coding) non-coding RNA RNA, long non-coding Approved 14q32.31 14q32.31 LINC00584 long intergenic non-protein coding RNA 584 Long non-coding RNAs 788 2012-04-01 2014-10-22 100507257 ENSG00000223403 OTTHUMG00000029067 uc001yjz.3 "AK094562|AK021527" NR_047664 19194500 MEG9 +HGNC:3232 MEGF6 multiple EGF like domains 6 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 EGFL3 "EGF-like-domain, multiple 3|multiple EGF-like-domains 6" 1998-03-25 2006-03-31 2016-01-21 2016-10-05 1953 ENSG00000162591 OTTHUMG00000000611 uc001akl.4 AB011539 NM_001409 CCDS41237 O75095 9693030 MGI:1919351 RGD:621188 MEGF6 604266 +HGNC:3233 MEGF8 multiple EGF like domains 8 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "SBP1|FLJ22365" HBV pre s2 binding protein 1 "EGFL4|C19orf49" "EGF-like-domain, multiple 4|chromosome 19 open reading frame 49|multiple EGF-like-domains 8" 1998-03-25 2006-03-31 2016-01-21 2016-01-21 1954 ENSG00000105429 OTTHUMG00000150342 uc002otl.4 AB011541 NM_001410 "CCDS12604|CCDS62693" Q7Z7M0 9693030 MGI:2446294 RGD:621190 MEGF8 604267 318839 +HGNC:3234 MEGF9 multiple EGF like domains 9 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 EGFL5 "EGF-like-domain, multiple 5|multiple EGF-like-domains 9" 1998-03-25 2006-03-31 2016-01-21 2016-10-05 1955 ENSG00000106780 OTTHUMG00000021039 uc022bms.2 AB011542 NM_001080497 CCDS48010 Q9H1U4 9693030 MGI:1918264 RGD:1308330 MEGF9 604268 +HGNC:29634 MEGF10 multiple EGF like domains 10 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 KIAA1780 multiple EGF-like-domains 10 Scavenger receptors 1253 2006-03-31 2016-01-21 2016-10-05 84466 ENSG00000145794 OTTHUMG00000128984 uc003kui.5 AK021631 NM_032446 "CCDS4142|CCDS78055" Q96KG7 11347906 MGI:2685177 RGD:735084 MEGF10 612453 292098 +HGNC:29635 MEGF11 multiple EGF like domains 11 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "KIAA1781|DKFZp434L121" multiple EGF-like-domains 11 2006-03-31 2016-01-21 2016-01-21 84465 ENSG00000157890 OTTHUMG00000133175 uc002apn.2 AB058677 NM_032445 CCDS10213 A6BM72 11347906 MGI:1920951 RGD:1582797 MEGF11 612454 +HGNC:6999 MEHMO mental retardation, epileptic seizures, hypogonadism and -genitalism, microcephaly and obesity syndrome phenotype phenotype only Approved Xp22.13-p21.1 Xp22.13-p21.1 1998-10-23 1998-10-23 8422 9781023 300148 +HGNC:28613 MEI1 meiotic double-stranded break formation protein 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "MGC40042|SPATA38" spermatogenesis associated 38 meiosis inhibitor 1 2007-10-04 2015-06-26 2015-06-26 150365 ENSG00000167077 OTTHUMG00000030083 uc003baz.2 AK092934 NM_152513 CCDS46718 Q5TIA1 "16683055|24710101" MGI:3028590 RGD:1307210 MEI1 608797 +HGNC:43638 MEI4 meiotic double-stranded break formation protein 4 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 meiosis-specific 4 homolog (S. cerevisiae) 2012-08-26 2015-06-26 2015-06-26 101928601 ENSG00000269964 OTTHUMG00000153472 uc032xbm.2 NM_001282136 CCDS64463 A8MW99 "20551173|24710101" MGI:1922283 RGD:1583682 +HGNC:23429 MEIG1 meiosis/spermiogenesis associated 1 protein-coding gene gene with protein product Approved 10p13 10p13 "bA2K17.3|SPATA39" spermatogenesis associated 39 meiosis expressed gene 1 homolog (mouse) 2004-05-28 2013-08-05 2014-11-18 644890 ENSG00000197889 OTTHUMG00000017717 uc009xjk.1 XM_927975 CCDS31151 Q5JSS6 23258628 MGI:1202878 RGD:1583655 MEIG1 614174 +HGNC:51253 MEIKIN meiotic kinetochore factor protein-coding gene gene with protein product Approved 5q31.1 05q31.1 2015-01-15 2015-01-15 728637 ENSG00000239642 OTTHUMG00000059633 NM_001303622 CCDS75292 A0A087WXM9 25533956 MGI:1922097 RGD:1566120 616232 +HGNC:28569 MEIOB meiosis specific with OB domains protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC35212 C16orf73 chromosome 16 open reading frame 73 2006-06-14 2012-08-13 2012-08-13 2016-07-15 254528 ENSG00000162039 OTTHUMG00000128683 uc002cne.3 BC029829 NM_152764 "CCDS10449|CCDS53983" Q8N635 12477932 MGI:1922428 RGD:1583204 3.1.-.- +HGNC:26670 MEIOC meiosis specific with coiled-coil domain protein-coding gene gene with protein product Approved 17q21.31 17q21.31 FLJ35848 C17orf104 chromosome 17 open reading frame 104 2009-09-08 2015-10-23 2015-10-23 2016-04-25 284071 ENSG00000180336 OTTHUMG00000153039 uc002iha.4 NM_001145080 CCDS45703 A2RUB1 26742488 MGI:2686410 RGD:1563746 616934 +HGNC:7000 MEIS1 Meis homeobox 1 protein-coding gene gene with protein product Approved 2p14 02p14 "Meis1 (mouse) homolog|Meis1, myeloid ecotropic viral integration site 1 homolog (mouse)" TALE class homeoboxes and pseudogenes 526 1996-12-17 2007-02-15 2015-09-03 4211 ENSG00000143995 OTTHUMG00000150714 uc002sdu.4 NM_002398 CCDS46309 O00470 7565694 MGI:104717 RGD:1585482 MEIS1 601739 8462 +HGNC:40370 MEIS1-AS2 MEIS1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 2p14 02p14 MEIS1-AS1 "MEIS1 antisense RNA 2 (non-protein coding)|MEIS1 antisense RNA 1|MEIS1 antisense RNA 1 (non-protein coding)" 2012-01-23 2012-08-15 2014-11-19 100873998 ENSG00000230749 OTTHUMG00000152831 uc061jwi.1 NR_046625 +HGNC:40369 MEIS1-AS3 MEIS1 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 2p14 02p14 MEIS1 antisense RNA 3 (non-protein coding) 2012-01-23 2012-08-15 2014-11-19 730198 ENSG00000226819 OTTHUMG00000152832 uc031rof.2 "DA226783|DA702499" NR_046438 +HGNC:7001 MEIS2 Meis homeobox 2 protein-coding gene gene with protein product Approved 15q14 15q14 "MRG1|HsT18361" "Meis (mouse) homolog 2|Meis1, myeloid ecotropic viral integration site 1 homolog 2 (mouse)" TALE class homeoboxes and pseudogenes 526 1998-02-09 2007-02-15 2014-11-19 4212 ENSG00000134138 OTTHUMG00000129781 uc001zjo.5 AF017418 NM_170677 "CCDS10044|CCDS10045|CCDS42014|CCDS45217|CCDS45218|CCDS45219|CCDS45220" O14770 9383298 MGI:108564 RGD:1305198 MEIS2 601740 8463 406645 +HGNC:29537 MEIS3 Meis homeobox 3 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "MRG2|DKFZp547H236" Meis1, myeloid ecotropic viral integration site 1 homolog 3 (mouse) TALE class homeoboxes and pseudogenes 526 2004-02-10 2007-02-15 2014-11-18 56917 ENSG00000105419 OTTHUMG00000172280 uc002pgt.5 BC025404 XM_085929 "CCDS33064|CCDS46132|CCDS74406" Q99687 8950991 MGI:108519 RGD:1308532 MEIS3 8380 +HGNC:7002 MEIS3P1 Meis homeobox 3 pseudogene 1 pseudogene pseudogene Approved 17p12 17p12 MRG2 "MEIS3|MEIS4" "Meis1, myeloid ecotropic viral integration site 1 homolog 3 (mouse)|Meis1, myeloid ecotropic viral integration site 1 homolog 4 (mouse)|Meis1 homolog 3 (mouse) pseudogene 1" TALE class homeoboxes and pseudogenes 526 1998-02-09 2005-12-23 2007-02-15 2011-06-20 4213 ENSG00000179277 OTTHUMG00000059145 U68385 NR_002211 A6NDR6 9049632 8411 +HGNC:17638 MEIS3P2 Meis homeobox 3 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 Meis1 homolog 3 (mouse) pseudogene 2 TALE class homeoboxes and pseudogenes 526 2005-12-23 2007-02-15 2011-06-20 257468 ENSG00000188013 OTTHUMG00000059559 NG_002418 A8K0S8 8381 +HGNC:7008 MELAS mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes phenotype phenotype only Approved mitochondria mitochondria 1991-11-14 2014-01-31 +HGNC:16870 MELK maternal embryonic leucine zipper kinase protein-coding gene gene with protein product Approved 9p13.2 09p13.2 KIAA0175 2003-02-04 2016-10-05 9833 ENSG00000165304 OTTHUMG00000019906 uc003zzn.5 D79997 NM_014791 "CCDS6606|CCDS59123|CCDS59124|CCDS59125|CCDS59126|CCDS59127|CCDS59128" Q14680 "8724849|9136115" MGI:106924 RGD:1308974 MELK 607025 objectId:2102 +HGNC:7009 MELL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-01-12 +HGNC:7037 MELTF melanotransferrin protein-coding gene gene with protein product Approved 3q29 03q29 "CD228|FLJ38863|MAP97|MGC4856|MTF1|MTf" "melanotransferrin|membrane-bound transferrin-like protein" MFI2 antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5 "CD molecules|Transferrins" "471|908" 2001-06-22 2016-02-04 2016-02-04 2016-10-05 4241 ENSG00000163975 OTTHUMG00000155518 uc003fxk.5 NM_005929 "CCDS3325|CCDS3326" P08582 MGI:1353421 RGD:1308155 155750 CD228 +HGNC:40373 MELTF-AS1 MELTF antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 MFI2-AS1 MFI2 antisense RNA 1 (non-protein coding) 2011-07-28 2016-10-03 2016-10-03 2016-10-03 100507057 ENSG00000228109 OTTHUMG00000155519 uc062sdg.1 NR_038285 27513470 +HGNC:14014 MEMO1 mediator of cell motility 1 protein-coding gene gene with protein product Approved 2p22.3 02p22.3 "CGI-27|MEMO" C2orf4 chromosome 2 open reading frame 4 2000-11-28 2007-02-12 2007-02-12 2016-10-05 51072 ENSG00000162959 OTTHUMG00000128453 uc002rnx.4 AF132961 NM_015955 "CCDS1776|CCDS46255" Q9Y316 15156151 MGI:1924140 RGD:1309929 MEMO1 611786 +HGNC:23274 MEMO1P1 mediator of cell motility 1 pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 "MEMO1P|C21orf19" "mediator of cell motility 1 pseudogene|chromosome 21 open reading frame 19" 2007-02-12 2010-02-25 2010-02-25 2014-11-19 728556 ENSG00000226054 OTTHUMG00000086608 DQ120661 NG_005842 +HGNC:38502 MEMO1P2 mediator of cell motility 1 pseudogene 2 pseudogene pseudogene Approved 6q23.3 06q23.3 2010-05-24 2014-11-19 645175 XR_017268 PGOHUM00000243785 +HGNC:38503 MEMO1P3 mediator of cell motility 1 pseudogene 3 pseudogene pseudogene Approved 3q26.1 03q26.1 2010-05-24 2016-10-05 100462782 ENSG00000239238 OTTHUMG00000158501 NG_022281 PGOHUM00000238258 +HGNC:38504 MEMO1P4 mediator of cell motility 1 pseudogene 4 pseudogene pseudogene Approved Xq25 Xq25 2010-05-24 2014-11-19 100462785 ENSG00000230376 OTTHUMG00000022332 NG_022698 PGOHUM00000241992 +HGNC:49102 MEMO1P5 mediator of cell motility 1 pseudogene 5 pseudogene pseudogene Approved 13q32.1 13q32.1 2013-09-02 2013-09-02 106481668 ENSG00000271492 OTTHUMG00000184874 NG_042937 PGOHUM00000248664 +HGNC:7010 MEN1 menin 1 protein-coding gene gene with protein product Approved 11q13 11q13 menin multiple endocrine neoplasia I 2001-06-22 2015-11-27 2016-10-12 4221 ENSG00000133895 OTTHUMG00000045366 uc001obq.4 U93236 XM_017017765 "CCDS8083|CCDS31600" O00255 MGI:1316736 RGD:3078 "UMD Locus Specific Databases|http://www.umd.be/|LRG_509|http://www.lrg-sequence.org/LRG/LRG_509" MEN1 613733 123196 +HGNC:7013 MEOX1 mesenchyme homeobox 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 MOX1 mesenchyme homeo box 1 HOXL subclass homeoboxes 518 1994-12-14 2005-12-22 2015-08-25 4222 ENSG00000005102 OTTHUMG00000170513 uc002idz.4 XM_011524818 "CCDS11466|CCDS11467|CCDS42343" P50221 7987315 MGI:103220 RGD:1308911 MEOX1 600147 8464 322841 +HGNC:7014 MEOX2 mesenchyme homeobox 2 protein-coding gene gene with protein product Approved 7p21.2 07p21.2 MOX2 growth arrest-specific homeobox GAX "mesenchyme homeo box 2 (growth arrest-specific homeo box)|mesenchyme homeobox 2 (growth arrest-specific homeo box)" HOXL subclass homeoboxes 518 1994-12-14 2005-12-22 2016-10-05 4223 ENSG00000106511 OTTHUMG00000152390 uc003stc.4 NM_005924 CCDS34605 P50222 7713505 MGI:103219 RGD:3079 MEOX2 600535 8465 +HGNC:50672 MEOX2-AS1 MEOX2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 7p21.2 07p21.2 2014-06-05 2014-06-05 101927524 ENSG00000229108 OTTHUMG00000152388 NR_110094 +HGNC:7015 MEP1A meprin A subunit alpha protein-coding gene gene with protein product Approved 6p12.3 06p12.3 PPHA PABA peptide hydrolase meprin A, alpha (PABA peptide hydrolase) Astacins 894 1994-07-19 2015-11-23 2016-10-05 4224 ENSG00000112818 OTTHUMG00000014790 uc010jzh.2 NM_005588 CCDS4918 Q16819 7774936 MGI:96963 RGD:3080 MEP1A 600388 M12.002 3.4.24.18 +HGNC:7018 MEP1AL3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:7019 MEP1AL4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-10-18 +HGNC:7016 MEP1AP1 meprin A subunit alpha pseudogene 1 pseudogene pseudogene Approved 9p11.2 09p11.2 MEP1AL1 "meprin A, alpha-like 1|meprin A, alpha-like 1 (pseudogene)|meprin A, alpha pseudogene 1" 1999-07-27 2010-10-20 2015-11-23 2015-11-23 642840 OTTHUMG00000013282 NG_006472 10405340 PGOHUM00000303811 +HGNC:7017 MEP1AP2 meprin A subunit alpha pseudogene 2 pseudogene pseudogene Approved 9q21.11 not on reference assembly 09q21.11 not on reference assembly MEP1AL2 "meprin A, alpha-like 2|meprin A, alpha-like 2 (pseudogene)|meprin A, alpha pseudogene 2" 1999-07-27 2010-10-20 2015-11-23 2015-11-23 644777 NG_006473 10405340 +HGNC:39137 MEP1AP3 meprin A subunit alpha pseudogene 3 pseudogene pseudogene Approved 9q21.11 09q21.11 meprin A, alpha pseudogene 3 2010-10-20 2015-11-23 2015-11-23 389747 OTTHUMG00000013275 NG_006474 PGOHUM00000304297 +HGNC:39138 MEP1AP4 meprin A subunit alpha pseudogene 4 pseudogene pseudogene Approved 9p11.1 09p11.1 meprin A, alpha pseudogene 4 2010-10-20 2015-11-23 2016-10-05 643157 ENSG00000224537 OTTHUMG00000013568 NG_006471 PGOHUM00000236527 +HGNC:7020 MEP1B meprin A subunit beta protein-coding gene gene with protein product Approved 18q12.2-q12.3 18q12.2-q12.3 meprin A, beta Astacins 894 1994-07-19 2015-11-23 2015-11-23 4225 ENSG00000141434 OTTHUMG00000179708 uc002kxj.5 X81333 NM_005925 "CCDS45846|CCDS77173" Q16820 7774936 MGI:96964 RGD:3081 MEP1B 600389 M12.004 3.4.24.18 +HGNC:20247 MEPCE methylphosphate capping enzyme protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "FLJ20257|MePCE" BCDIN3 bin3, bicoid-interacting 3, homolog (Drosophila) 2005-08-11 2007-07-26 2007-07-26 2014-11-19 56257 ENSG00000146834 OTTHUMG00000155255 uc003uuw.3 AF264752 XM_011516410 "CCDS5693|CCDS55136" Q7L2J0 "12358911|17643375" MGI:106477 RGD:1560550 MEPCE 611478 +HGNC:13361 MEPE matrix extracellular phosphoglycoprotein protein-coding gene gene with protein product Approved 4q22.1 04q22.1 matrix, extracellular phosphoglycoprotein with ASARM motif (bone) SIBLING family 1279 2000-09-19 2008-08-29 2016-10-05 56955 ENSG00000152595 OTTHUMG00000130592 uc021xpu.2 AJ276396 XM_006714278 "CCDS3625|CCDS54776|CCDS77940" Q9NQ76 10945470 MGI:2137384 RGD:71036 MEPE 605912 +HGNC:7021 MER1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7022 MER2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7023 MER5 antigen identified by monoclonal antibody 2D8 other unknown Approved 19q13.3 19q13.3 2001-06-22 2013-03-26 4228 +HGNC:7025 MERR entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7027 MERTK MER proto-oncogene, tyrosine kinase protein-coding gene gene with protein product Approved 2q13 02q13 "mer|RP38|c-Eyk|Tyro12" c-mer proto-oncogene tyrosine kinase "Receptor Tyrosine Kinases|Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "321|555|593|594" 1998-11-30 2014-06-26 2016-10-05 10461 ENSG00000153208 OTTHUMG00000131278 uc002thk.2 U08023 XM_011510490 CCDS2094 Q12866 "8086340|10343112" MGI:96965 RGD:69283 Mutations of the MER Receptor Tyrosine Kinase Gene|http://www.retina-international.org/files/sci-news/mertkmut.htm MERTK 604705 123198 objectId:1837 +HGNC:13519 MESDC1 mesoderm development candidate 1 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 MGC99595 2000-09-25 2016-10-05 59274 ENSG00000140406 OTTHUMG00000144185 uc002bfz.4 AY007810 NM_022566 CCDS10316 Q9H1K6 11247670 MGI:1891420 RGD:1311666 MESDC1 615466 +HGNC:13520 MESDC2 mesoderm development candidate 2 protein-coding gene gene with protein product Approved 15q13 15q13 "KIAA0081|BOCA|MESD" 2000-09-25 2014-11-19 23184 ENSG00000117899 OTTHUMG00000172288 uc059mkq.1 D42039 NM_015154 CCDS32308 Q14696 "7788527|11247670" MGI:1891421 RGD:1310344 MESDC2 607783 +HGNC:29658 MESP1 mesoderm posterior bHLH transcription factor 1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "MGC10676|bHLHc5" "mesoderm posterior 1 homolog (mouse)|mesoderm posterior basic helix-loop-helix transcription factor 1" Basic helix-loop-helix proteins 420 2005-10-21 2015-06-16 2015-06-16 55897 ENSG00000166823 OTTHUMG00000149810 uc002bol.4 NM_018670 CCDS10355 Q9BRJ9 "8787751|11578861" MGI:107785 RGD:1311751 MESP1 608689 +HGNC:29659 MESP2 mesoderm posterior bHLH transcription factor 2 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "SCDO2|bHLHc6" "mesoderm posterior 2 homolog (mouse)|mesoderm posterior basic helix-loop-helix transcription factor 2" Basic helix-loop-helix proteins 420 2005-10-21 2015-06-16 2015-06-16 145873 ENSG00000188095 OTTHUMG00000172016 uc002bon.4 XM_085261 CCDS42078 Q0VG99 11578861 MGI:1096325 RGD:1305959 MESP2 605195 139173 +HGNC:7028 MEST mesoderm specific transcript protein-coding gene gene with protein product Approved 7q32.2 07q32.2 PEG1 Paternally-expressed gene 1 "mesoderm specific transcript (mouse) homolog|mesoderm specific transcript homolog (mouse)" 1996-04-17 2012-12-07 2016-10-12 4232 ENSG00000106484 OTTHUMG00000156661 uc003vqc.4 NM_002402 "CCDS5822|CCDS5823|CCDS59081" Q5EB52 8884280 MGI:96968 RGD:1594589 LRG_1033|http://www.lrg-sequence.org/LRG/LRG_1033 MEST 601029 S33.972 +HGNC:17991 MESTIT1 MEST intronic transcript 1, antisense RNA non-coding RNA RNA, long non-coding Approved 7q32.2 07q32.2 "NCRNA00040|MEST-AS1" "non-protein coding RNA 40|MEST antisense RNA 1 (non-protein coding)" MEST intronic transcript 1, antisense RNA (non-protein coding) 2003-01-21 2011-07-07 2012-08-15 2016-10-12 317751 ENSG00000272701 OTTHUMG00000186331 uc003vqe.4 AF482998 NR_004382 12095916 LRG_1056|http://www.lrg-sequence.org/LRG/LRG_1056 607794 +HGNC:29660 MESTP1 mesoderm specific transcript pseudogene 1 pseudogene pseudogene Approved 6q22.33 06q22.33 mesoderm specific transcript homolog (mouse) pseudogene 1 2005-10-21 2012-12-07 2016-10-05 338470 ENSG00000220884 OTTHUMG00000015543 AL445439 NG_002694 PGOHUM00000243359 +HGNC:18208 MESTP2 mesoderm specific transcript pseudogene 2 pseudogene pseudogene Approved 15q22.2 15q22.2 mesoderm specific transcript homolog (mouse) pseudogene 2 2010-06-17 2012-12-07 2014-11-19 100421572 ENSG00000259558 OTTHUMG00000172012 NG_025325 PGOHUM00000246809 +HGNC:38553 MESTP3 mesoderm specific transcript pseudogene 3 pseudogene pseudogene Approved 4p15.1 04p15.1 mesoderm specific transcript homolog (mouse) pseudogene 3 2010-06-17 2012-12-07 2014-11-18 645641 ENSG00000250927 OTTHUMG00000160398 NG_022008 PGOHUM00000245487 +HGNC:38554 MESTP4 mesoderm specific transcript pseudogene 4 pseudogene pseudogene Approved 3p24.1 03p24.1 mesoderm specific transcript homolog (mouse) pseudogene 4 2010-06-17 2012-12-07 2014-11-18 131572 ENSG00000215004 OTTHUMG00000155719 NG_028940 PGOHUM00000237974 +HGNC:7029 MET MET proto-oncogene, receptor tyrosine kinase protein-coding gene gene with protein product Approved 7q31 07q31 "HGFR|RCCP2|DFNB97" hepatocyte growth factor receptor met proto-oncogene Receptor Tyrosine Kinases 321 1986-01-01 2014-06-26 2016-10-12 4233 ENSG00000105976 OTTHUMG00000023299 uc003vij.4 M35073 NM_001324402 "CCDS43636|CCDS47689" P08581 "1846706|1611909|25941349" MGI:96969 RGD:3082 LRG_662|http://www.lrg-sequence.org/LRG/LRG_662 MET 164860 123201 objectId:1815 2.7.10.1 +HGNC:15789 METAP1 methionyl aminopeptidase 1 protein-coding gene gene with protein product Approved 4q23 04q23 "KIAA0094|MetAP1A|MAP1A" Peptidase M Aminopeptidases 104 2001-09-26 2014-11-19 23173 ENSG00000164024 OTTHUMG00000161231 uc003huf.5 D42084 NM_015143 CCDS47110 P53582 "7788527|12144506" MGI:1922874 RGD:1305545 METAP1 610151 M24.017 objectId:1572 3.4.11.18 +HGNC:32583 METAP1D methionyl aminopeptidase type 1D, mitochondrial protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "MAP1D|Metap1l" methionine aminopeptidase 1D Aminopeptidases 104 2010-09-21 2016-08-11 2016-08-11 254042 ENSG00000172878 OTTHUMG00000132283 uc002uhk.4 "AY374142|BC029123" NM_199227 CCDS2246 Q6UB28 "14532271|16568094" MGI:1913809 RGD:1307413 METAP1D 610267 objectId:1574 +HGNC:16672 METAP2 methionyl aminopeptidase 2 protein-coding gene gene with protein product Approved 12q22 12q22 "MNPEP|p67|MAP2" Peptidase M Aminopeptidases 104 2001-09-26 2014-11-19 10988 ENSG00000111142 OTTHUMG00000170280 uc001tec.4 U13261 NM_006838 "CCDS9052|CCDS81723|CCDS81724|CCDS81725" P50579 "7644482|8858118" MGI:1929701 RGD:70995 METAP2 601870 M24.002 objectId:1573 3.4.11.18 +HGNC:14151 METRN meteorin, glial cell differentiation regulator protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC2601 C16orf23 chromosome 16 open reading frame 23 2000-12-21 2004-12-01 2004-11-26 2014-11-19 79006 ENSG00000103260 OTTHUMG00000047851 uc010bra.4 BC000662 NM_024042 CCDS10422 Q9UJH8 15085178 MGI:1917333 RGD:1306222 METRN 610998 +HGNC:27584 METRNL meteorin like, glial cell differentiation regulator protein-coding gene gene with protein product Approved 17q25.3 17q25.3 2004-12-01 2016-06-13 2016-06-13 284207 ENSG00000176845 OTTHUMG00000177771 uc002kgh.4 AK093748 NM_001004431 CCDS32779 Q641Q3 MGI:2384806 RGD:1359271 METRNL 616241 +HGNC:7030 METTL1 methyltransferase like 1 protein-coding gene gene with protein product Approved 12q14.1 12q14.1 "TRM8|TRMT8" C12orf1 methyltransferase-like 1 Methyltransferase like 963 1998-06-10 2005-03-01 2016-10-05 4234 ENSG00000037897 OTTHUMG00000150143 uc010ssd.3 "BC000550|BQ651940|Y18643" NM_005371 "CCDS8955|CCDS8956" Q9UBP6 "10329009|15861136" MGI:1339986 RGD:1593036 METTL1 604466 2.1.1.33 +HGNC:25755 METTL2A methyltransferase like 2A protein-coding gene gene with protein product Approved 17q23.2 17q23.2 "FLJ12760|METTL2" Methyltransferase like 963 2006-02-09 2006-02-10 2016-10-05 339175 ENSG00000087995 OTTHUMG00000164527 uc002izv.3 AK000991 NM_181725 CCDS45752 Q96IZ6 12477932 MGI:1289171 RGD:1310240 METTL2A +HGNC:18272 METTL2B methyltransferase like 2B protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "METL|FLJ11350" METTL2 methyltransferase like 2 Methyltransferase like 963 2003-01-29 2006-02-09 2006-02-09 2016-10-05 55798 ENSG00000165055 OTTHUMG00000143738 uc003vnf.3 AK002212 NM_018396 CCDS5803 Q6P1Q9 11738826 METTL2B 607846 +HGNC:17563 METTL3 methyltransferase like 3 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "Spo8|M6A|MT-A70" "N6-adenosine-methyltransferase 70 kDa subunit|mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase" Methyltransferase like 963 2003-01-14 2016-10-05 56339 ENSG00000165819 OTTHUMG00000168825 uc001wbc.4 AF014837 NM_019852 CCDS32044 Q86U44 24316715 MGI:1927165 RGD:1311750 METTL3 612472 2.1.1.62 +HGNC:24726 METTL4 methyltransferase like 4 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 "FLJ23017|HsT661" Methyltransferase like 963 2004-01-08 2016-10-05 64863 ENSG00000101574 OTTHUMG00000131482 uc002klh.5 NM_022840 "CCDS11826|CCDS77144" Q8N3J2 12477932 MGI:1924031 RGD:1306451 METTL4 +HGNC:25006 METTL5 methyltransferase like 5 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 HSPC133 Methyltransferase like 963 2005-04-14 2014-11-18 29081 ENSG00000138382 OTTHUMG00000154117 uc002ufp.4 AF201938 NM_014168 CCDS33320 Q9NRN9 11042152 MGI:1922672 RGD:1566062 METTL5 +HGNC:28343 METTL6 methyltransferase like 6 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 MGC24132 Methyltransferase like 963 2005-11-02 2015-08-25 131965 ENSG00000206562 OTTHUMG00000156431 uc062hcc.1 AK057791 NM_152396 "CCDS43056|CCDS77706" Q8TCB7 12477932 MGI:1914261 RGD:1359565 METTL6 +HGNC:24550 METTL7A methyltransferase like 7A protein-coding gene gene with protein product Approved 12q13.12 12q13.12 DKFZP586A0522 Methyltransferase like 963 2006-02-09 2016-07-06 25840 ENSG00000185432 OTTHUMG00000169484 uc058nys.1 NM_014033 CCDS8804 Q9H8H3 12975309 "MGI:1916523|MGI:3026615|MGI:3710670" RGD:1308407 METTL7A 2.1.1.- +HGNC:48874 METTL7AP1 methyltransferase like 7A pseudogene 1 pseudogene pseudogene Approved 12q13.13 12q13.13 2013-06-20 2013-06-20 100996686 ENSG00000257649 OTTHUMG00000169628 PGOHUM00000261131 +HGNC:28276 METTL7B methyltransferase like 7B protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "MGC17301|ALDI" associated with lipid droplets 1 Methyltransferase like 963 2006-02-09 2014-11-19 196410 ENSG00000170439 OTTHUMG00000152665 uc010spr.3 NM_152637 CCDS8887 Q6UX53 17004324 MGI:1918914 RGD:1305205 METTL7B +HGNC:25856 METTL8 methyltransferase like 8 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "FLJ13984|TIP" tension-induced/inhibited protein Methyltransferase like 963 2006-05-10 2016-04-25 79828 ENSG00000123600 OTTHUMG00000132261 uc032ojq.2 AK024046 NM_024770 "CCDS2242|CCDS82531|CCDS82532" Q9H825 15992539 MGI:2385142 RGD:1561059 METTL8 609525 +HGNC:49856 METTL8P1 methyltransferase like 8 pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 2014-03-18 2014-03-18 728996 ENSG00000256283 OTTHUMG00000168748 NG_007062 PGOHUM00000239359 +HGNC:24586 METTL9 methyltransferase like 9 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 DREV1 DORA reverse strand protein 1 Methyltransferase like 963 2006-07-11 2014-11-19 51108 ENSG00000197006 OTTHUMG00000131584 uc002dje.4 "NM_016025|AF151839" NM_016025 "CCDS10598|CCDS45440" Q9H1A3 "10810093|11132146" MGI:1914862 RGD:2311609 METTL9 609388 +HGNC:33787 METTL10 methyltransferase like 10 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 Em:AC068896.3 C10orf138 chromosome 10 open reading frame 138 Methyltransferase like 963 2008-02-14 2016-01-11 399818 ENSG00000203791 OTTHUMG00000019217 uc001lhy.2 NM_212554 CCDS31307 Q5JPI9 25144183 MGI:1919346 RGD:1306300 METTL10 +HGNC:31932 METTL11B methyltransferase like 11B protein-coding gene gene with protein product Approved 1q24.2 01q24.2 HOMT1B C1orf184 chromosome 1 open reading frame 184 Methyltransferase like 963 2005-08-08 2008-06-11 2008-06-11 2015-08-25 149281 ENSG00000203740 OTTHUMG00000035959 uc009wvv.2 "AL445203|CAH72139" NM_001136107 CCDS44275 Q5VVY1 MGI:2685053 RGD:1564106 METTL11B +HGNC:33113 METTL12 methyltransferase like 12 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 U99HG Methyltransferase like 963 2009-02-23 2014-11-18 751071 ENSG00000214756 OTTHUMG00000167545 uc001nug.2 BC041359 NM_001043229 CCDS41657 A8MUP2 METTL12 +HGNC:24248 METTL13 methyltransferase like 13 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 CGI-01 KIAA0859 KIAA0859 Methyltransferase like 963 2004-11-10 2009-02-23 2009-02-23 2016-10-05 51603 ENSG00000010165 OTTHUMG00000034912 uc001ghz.4 AF132936 NM_014955 "CCDS1299|CCDS1300|CCDS30936" Q8N6R0 "10810093|10048485" MGI:1918699 RGD:1311526 METTL13 +HGNC:29330 METTL14 methyltransferase like 14 protein-coding gene gene with protein product Approved 4q26 04q26 KIAA1627 Methyltransferase like 963 2009-02-24 2014-11-19 57721 ENSG00000145388 OTTHUMG00000161167 uc003icf.4 AB046847 NM_020961 CCDS34053 Q9HCE5 "10997877|24316715" MGI:2442926 RGD:1304822 METTL14 616504 2.1.1.62 +HGNC:26606 METTL15 methyltransferase like 15 protein-coding gene gene with protein product Approved 11p14.1 11p14.1 FLJ33979 METT5D1 methyltransferase 5 domain containing 1 Methyltransferase like 963 2005-03-01 2011-03-02 2011-03-02 2014-11-19 196074 ENSG00000169519 OTTHUMG00000150448 uc001msh.3 AL832668 NM_152636 "CCDS31450|CCDS44559|CCDS73269" A6NJ78 12477932 MGI:1924144 RGD:1304978 METTL15 +HGNC:31926 METTL15P1 methyltransferase like 15 pseudogene 1 pseudogene pseudogene Approved 3q25.31 03q25.31 METT5D2 methyltransferase 5 domain containing 2 2005-03-01 2011-03-02 2011-03-02 2011-03-02 100130758 ENSG00000174912 OTTHUMG00000158645 NG_011761 P0C7V9 PGOHUM00000250267 +HGNC:39559 METTL15P2 methyltransferase like 15 pseudogene 2 pseudogene pseudogene Approved 12q14.1 12q14.1 2011-03-02 2011-03-02 644915 NG_021691 PGOHUM00000239484 +HGNC:39558 METTL15P3 methyltransferase like 15 pseudogene 3 pseudogene pseudogene Approved Xp22.11 Xp22.11 2011-03-02 2011-03-02 729650 ENSG00000224396 OTTHUMG00000021243 NG_022648 PGOHUM00000241663 +HGNC:28484 METTL16 methyltransferase like 16 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 MGC3329 METT10D methyltransferase 10 domain containing Methyltransferase like 963 2005-12-19 2011-03-02 2011-03-02 2014-11-19 79066 ENSG00000127804 OTTHUMG00000177564 uc002fut.4 AK027410 NM_024086 CCDS42232 Q86W50 18021804 MGI:1914743 RGD:1593242 METTL16 +HGNC:19280 METTL17 methyltransferase like 17 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ20859 METT11D1 methyltransferase 11 domain containing 1 Methyltransferase like 963 2006-05-19 2011-03-02 2011-03-02 2014-11-19 64745 ENSG00000165792 OTTHUMG00000029610 uc001vyn.4 AK024512 NM_022734 "CCDS9562|CCDS41913" Q9H7H0 11278769 MGI:1098577 RGD:1559895 METTL17 616091 +HGNC:28793 METTL18 methyltransferase like 18 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "MGC9084|AsTP2|HPM1" histidine protein methyltransferase 1 C1orf156 chromosome 1 open reading frame 156 Methyltransferase like 963 2005-07-14 2011-03-02 2011-03-02 2014-11-18 92342 ENSG00000171806 OTTHUMG00000035813 uc001ggn.6 AL035369 NM_033418 CCDS1284 O95568 20864530 MGI:1917212 RGD:1306783 METTL18 615255 +HGNC:30476 METTL21A methyltransferase like 21A protein-coding gene gene with protein product Approved 2q33.3 02q33.3 "LOC151194|HCA557b|HSPA-KMT" "Hepatocellular carcinoma-associated antigen 557b|heat shock protein 70kDa lysine (K) methyltransferase" FAM119A family with sequence similarity 119, member A Methyltransferase like 963 2006-05-15 2011-03-03 2011-03-03 2015-11-09 151194 ENSG00000144401 OTTHUMG00000132934 uc010fuk.1 "AK093812|AF455817" NM_145280 "CCDS2376|CCDS77514|CCDS82562|CCDS82563" Q8WXB1 23921388 MGI:1914349 RGD:7651604 METTL21A 615257 +HGNC:41921 METTL21AP1 methyltransferase like 21A pseudogene 1 pseudogene pseudogene Approved 21q22.2 21q22.2 2011-05-18 2011-05-18 100421629 ENSG00000229623 OTTHUMG00000066177 NG_025044 PGOHUM00000239085 +HGNC:24936 METTL21B methyltransferase like 21B protein-coding gene gene with protein product Approved 12q14.1 12q14.1 DKFZP586D0919 FAM119B family with sequence similarity 119, member B Methyltransferase like 963 2006-05-15 2011-03-03 2011-03-03 2015-08-25 25895 ENSG00000123427 OTTHUMG00000170459 uc001sqg.4 "AL050100|AF455816" NM_015433 "CCDS8957|CCDS31848" Q96AZ1 12477932 MGI:3645330 RGD:1590711 METTL21B 615258 +HGNC:33717 METTL21C methyltransferase like 21C protein-coding gene gene with protein product Approved 13q33.1 13q33.1 LOC196541 C13orf39 chromosome 13 open reading frame 39 Methyltransferase like 963 2008-07-11 2011-03-03 2011-03-03 2011-03-03 196541 ENSG00000139780 OTTHUMG00000017304 uc001vpj.5 NM_001010977 CCDS32003 Q5VZV1 MGI:3611450 RGD:1561425 METTL21C 615259 +HGNC:41948 METTL21EP methyltransferase like 21E, pseudogene pseudogene pseudogene Approved 13q33.1 13q33.1 METTL21CP1 methyltransferase like 21C pseudogene 1 2011-08-15 2012-11-09 2012-11-09 2012-11-09 121952 ENSG00000250878 OTTHUMG00000017312 NR_026965 A6NDL7 MGI:2685837 RGD:2320407 PGOHUM00000248678 +HGNC:28368 METTL22 methyltransferase like 22 protein-coding gene gene with protein product Approved 16p13.2 16p13.2 "FLJ12433|MGC2654" C16orf68 chromosome 16 open reading frame 68 Methyltransferase like 963 2006-04-06 2011-03-03 2011-03-03 2014-11-19 79091 ENSG00000067365 OTTHUMG00000129694 uc002czb.4 AK022495 NM_024109 CCDS10533 Q9BUU2 24140279 MGI:2384301 RGD:1311433 METTL22 615261 +HGNC:26988 METTL23 methyltransferase like 23 protein-coding gene gene with protein product Approved 17q25.2 17q25.2 LOC124512 C17orf95 chromosome 17 open reading frame 95 Methyltransferase like 963 2008-07-11 2011-03-03 2011-03-03 2014-11-17 124512 ENSG00000181038 OTTHUMG00000180371 uc002jsr.4 NM_001080510 "CCDS45787|CCDS59298" Q86XA0 24501276 MGI:1921569 RGD:1306284 METTL23 615262 405470 +HGNC:21566 METTL24 methyltransferase like 24 protein-coding gene gene with protein product Approved 6q21 06q21 dJ71D21.2 C6orf186 chromosome 6 open reading frame 186 Methyltransferase like 963 2003-11-26 2012-02-21 2012-02-21 2014-11-18 728464 ENSG00000053328 OTTHUMG00000015359 uc010kdu.2 NM_001123364 CCDS43489 Q5JXM2 MGI:3045338 RGD:1564857 +HGNC:26228 METTL25 methyltransferase like 25 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 FLJ22789 C12orf26 chromosome 12 open reading frame 26 Methyltransferase like 963 2006-01-06 2012-08-13 2012-08-13 2014-11-19 84190 ENSG00000127720 OTTHUMG00000170252 uc001szq.4 BC029120 NM_032230 CCDS9024 Q8N6Q8 MGI:3041259 RGD:1310270 +HGNC:14141 METTL26 methyltransferase like 26 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC13114 C16orf13 chromosome 16 open reading frame 13 Methyltransferase like 963 2000-12-21 2016-06-15 2016-06-15 2016-06-15 84326 ENSG00000130731 OTTHUMG00000047855 uc002chv.3 NM_001040160 "CCDS32352|CCDS42090|CCDS42091|CCDS45367|CCDS45368|CCDS73798" Q96S19 MGI:1915597 RGD:1307155 +HGNC:33482 MEX3A mex-3 RNA binding family member A protein-coding gene gene with protein product Approved 1q22 01q22 RKHD4 "ring finger and KH domain containing 4|mex-3 homolog A (C. elegans)" Ring finger proteins 58 2007-06-12 2007-07-18 2013-08-21 2013-09-24 92312 ENSG00000254726 OTTHUMG00000017465 uc001fnd.4 AK024097 NM_001093725 CCDS53377 A1L020 17267406 MGI:1919890 RGD:1564904 MEX3A 611007 +HGNC:25297 MEX3B mex-3 RNA binding family member B protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "DKFZp434J0617|RNF195" RKHD3 "ring finger and KH domain containing 3|mex-3 homolog B (C. elegans)" Ring finger proteins 58 2004-05-24 2007-07-18 2013-08-21 2016-10-05 84206 ENSG00000183496 OTTHUMG00000147356 uc002bgq.3 AK131424 XM_290645 CCDS10319 Q6ZN04 "11230166|17267406" MGI:1918252 RGD:1306790 MEX3B 611008 +HGNC:28040 MEX3C mex-3 RNA binding family member C protein-coding gene gene with protein product Approved 18q21.2 18q21.2 "FLJ38871|RNF194" RKHD2 "ring finger and KH domain containing 2|mex-3 homolog C (C. elegans)" Ring finger proteins 58 2004-05-24 2007-07-18 2013-08-21 2016-10-05 51320 ENSG00000176624 OTTHUMG00000132693 uc002lfc.5 BC041122 NM_016626 CCDS11951 Q5U5Q3 17267406 MGI:2652843 RGD:1309023 MEX3C 611005 +HGNC:16734 MEX3D mex-3 RNA binding family member D protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "Tino|KIAA2031|OK/SW-cl.4|RNF193" bcl-2 ARE RNA binding protein RKHD1 "ring finger and KH domain containing 1|mex-3 homolog D (C. elegans)" Ring finger proteins 58 2004-03-17 2007-07-18 2013-08-21 2014-11-18 399664 ENSG00000181588 OTTHUMG00000150369 uc060rdi.1 AB107353 NM_203304 CCDS32865 Q86XN8 17267406 MGI:2681847 RGD:1310576 MEX3D 611009 +HGNC:7032 MFAP1 microfibrillar associated protein 1 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 1994-06-17 2015-11-12 2015-11-12 4236 ENSG00000140259 OTTHUMG00000060145 uc001zth.2 NM_005926 CCDS10105 P55081 7835894 "MGI:1914782|MGI:3694697" RGD:1562232 MFAP1 600215 +HGNC:39694 MFAP1P1 microfibrillar associated protein 1 pseudogene 1 pseudogene pseudogene Approved 13q12.3 13q12.3 2011-03-23 2015-11-12 2015-11-12 646755 ENSG00000232489 OTTHUMG00000016673 NG_011532 PGOHUM00000248352 +HGNC:7033 MFAP2 microfibrillar associated protein 2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "MAGP|MAGP-1" 1994-07-22 2015-11-12 2016-10-05 4237 ENSG00000117122 OTTHUMG00000002290 uc057csz.1 BC015039 NM_002403 "CCDS174|CCDS44071" P55001 7759096 MGI:99559 RGD:1306031 MFAP2 156790 +HGNC:7034 MFAP3 microfibrillar associated protein 3 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 I-set domain containing 593 1994-07-22 2015-11-12 2016-10-05 4238 ENSG00000037749 OTTHUMG00000130149 uc003lvf.3 NM_005927 "CCDS4324|CCDS47319" P55082 7782085 MGI:1924068 RGD:1359463 MFAP3 600491 +HGNC:29083 MFAP3L microfibrillar associated protein 3 like protein-coding gene gene with protein product Approved 4q33 04q33 "KIAA0626|NYD-sp9" I-set domain containing 593 2004-06-25 2015-11-12 2015-11-12 9848 ENSG00000198948 OTTHUMG00000160942 uc003isp.5 AB014526 NM_021647 "CCDS34103|CCDS43281" O75121 9734811 MGI:1918556 RGD:1311274 MFAP3L 616523 +HGNC:7035 MFAP4 microfibrillar associated protein 4 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 microfibril-associated glycoprotein 4 Fibrinogen C domain containing 554 1994-11-17 2015-11-12 2015-11-12 4239 ENSG00000166482 OTTHUMG00000059585 uc002gvt.4 L38486 NM_002404 "CCDS11208|CCDS56023" P55083 7633408 MGI:1342276 RGD:1307841 MFAP4 600596 +HGNC:29673 MFAP5 microfibrillar associated protein 5 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "MAGP2|MP25" 2004-04-05 2015-11-12 8076 ENSG00000197614 OTTHUMG00000168703 uc001qut.2 AK124368 NM_003480 "CCDS8595|CCDS73437|CCDS76522|CCDS76523|CCDS76524" Q13361 "9792630|8557636" MGI:1354387 RGD:1307919 MFAP5 601103 420468 +HGNC:24858 MFF mitochondrial fission factor protein-coding gene gene with protein product Approved 2q36.3 02q36.3 GL004 C2orf33 chromosome 2 open reading frame 33 2004-06-28 2008-05-29 2008-05-29 2016-10-05 56947 ENSG00000168958 OTTHUMG00000133180 uc002vot.5 AF258660 NM_020194 "CCDS2465|CCDS63139|CCDS63140|CCDS63141|CCDS63142|CCDS74662" Q9GZY8 18353969 MGI:1922984 RGD:1310230 MFF 614785 +HGNC:7036 MFGE8 milk fat globule-EGF factor 8 protein protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "SED1|EDIL1|BA46|OAcGD3S|HsT19888|MFG-E8|hP47" "sperm surface protein hP47|lactadherin" SPAG10 sperm associated antigen 10 1996-10-31 2016-10-05 4240 ENSG00000140545 OTTHUMG00000148682 uc002bng.5 U58516 NM_005928 "CCDS10347|CCDS45345|CCDS81918" Q08431 "9027496|19204935" MGI:102768 RGD:3083 MFGE8 602281 +HGNC:16982 MFHAS1 malignant fibrous histiocytoma amplified sequence 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "MASL1|LRRC65" "leucine rich repeat containing 65|malignant fibrous histiocytoma-amplified sequences with leucine-rich tandem repeats 1" 2001-12-03 2014-03-07 9258 ENSG00000147324 OTTHUMG00000163676 uc003wsj.2 AB016816 NM_004225 CCDS34844 Q9Y4C4 9973190 MGI:1098644 RGD:1308812 MFHAS1 605352 +HGNC:18262 MFN1 mitofusin 1 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 FLJ20693 2003-02-25 2016-10-05 55669 ENSG00000171109 OTTHUMG00000157385 uc003fjs.4 AF054986 NM_017927 CCDS3228 Q8IWA4 "8358434|11181170" MGI:1914664 RGD:621460 MFN1 608506 +HGNC:16877 MFN2 mitofusin 2 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "CPRP1|KIAA0214|MARF|CMT2A2" 2003-02-25 2016-10-12 9927 ENSG00000116688 OTTHUMG00000002392 uc009vni.4 AF036536 NM_014874 CCDS30587 O95140 "12499352|11181170" MGI:2442230 RGD:628843 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_255|http://www.lrg-sequence.org/LRG/LRG_255" MFN2 608507 123207 +HGNC:7038 MFNG MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "manic fringe (Drosophila) homolog|manic fringe homolog (Drosophila)" Beta 3-glycosyltransferases 426 1997-11-07 2006-11-13 2014-11-19 4242 ENSG00000100060 OTTHUMG00000150560 uc003ass.3 BC094814 NM_002405 "CCDS13947|CCDS54525" O00587 "9878264|9187150" MGI:1095404 RGD:735126 MFNG 602577 2.4.1.222 +HGNC:18121 MFRP membrane frizzled-related protein protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "FLJ30570|rd6|NNO2|C1QTNF5" "membrane-type frizzled-related protein|complement C1q tumor necrosis factor-related protein 5 precursor variant 1" 2002-02-25 2015-07-24 83552 ENSG00000235718 OTTHUMG00000166199 uc001pwj.4 AB055505 NM_031433 CCDS8421 Q9BY79 11263980 MGI:2385957 RGD:1307477 MFRP 606227 123212 +HGNC:25874 MFSD1 major facilitator superfamily domain containing 1 protein-coding gene gene with protein product Approved 3q25.32 03q25.32 "FLJ14153|UG0581B09" 2005-01-24 2016-04-25 64747 ENSG00000118855 OTTHUMG00000158835 uc003fcl.3 BC017661 NM_022736 "CCDS3185|CCDS54666" Q9H3U5 MGI:1914118 RGD:1305751 MFSD1 +HGNC:50625 MFSD1P1 major facilitator superfamily domain containing 1 pseudogene 1 pseudogene pseudogene Approved 17p13.2 17p13.2 2014-05-30 2014-05-30 100313532 ENSG00000261868 OTTHUMG00000177730 NG_015881 PGOHUM00000237202 +HGNC:25897 MFSD2A major facilitator superfamily domain containing 2A protein-coding gene gene with protein product Approved 1p34.2 01p34.2 FLJ14490 MFSD2 major facilitator superfamily domain containing 2 2005-07-18 2009-09-08 2009-09-08 2015-11-02 84879 ENSG00000168389 OTTHUMG00000009293 uc001ceu.5 AK093223 NM_032793 "CCDS446|CCDS44118|CCDS72762" Q8NA29 "18694395|24828040|24828044" MGI:1923824 RGD:1310174 MFSD2A 614397 435518 +HGNC:37207 MFSD2B major facilitator superfamily domain containing 2B protein-coding gene gene with protein product Approved 2p23.3 02p23.3 2009-09-08 2010-05-11 388931 ENSG00000205639 OTTHUMG00000090819 uc032ngs.2 NM_001080473 CCDS46228 A6NFX1 18694395 MGI:3583946 RGD:1561716 MFSD2B +HGNC:25157 MFSD3 major facilitator superfamily domain containing 3 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 2005-08-16 2014-11-19 113655 ENSG00000167700 OTTHUMG00000165177 uc003zdi.2 NM_138431 CCDS6431 Q96ES6 MGI:1916822 RGD:1560274 MFSD3 +HGNC:25433 MFSD4A major facilitator superfamily domain containing 4A protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "DKFZp761N1114|FLJ34577|UNQ3064|FLJ25004" MFSD4 major facilitator superfamily domain containing 4 2005-11-17 2016-01-05 2016-01-05 2016-01-05 148808 ENSG00000174514 OTTHUMG00000037197 uc001hcv.5 BC036549 NM_181644 CCDS1455 Q8N468 MGI:2442786 RGD:1566090 +HGNC:21053 MFSD4B major facilitator superfamily domain containing 4B protein-coding gene gene with protein product Approved 6q21 06q21 MGC33953 KIAA1919 KIAA1919 2003-11-21 2016-01-05 2016-01-05 2016-10-05 91749 ENSG00000173214 OTTHUMG00000015372 uc003puv.5 BC036115 NM_153369 CCDS5090 Q5TF39 "MGI:1919295|MGI:2143575|MGI:2446139|MGI:3035041|MGI:3773841" RGD:1559971 +HGNC:50626 MFSD4BP1 major facilitator superfamily domain containing 4B pseudogene 1 pseudogene pseudogene Approved 5q11.2 05q11.2 2016-01-05 2016-01-05 100128154 ENSG00000250827 OTTHUMG00000162166 NG_021848 PGOHUM00000235220 +HGNC:28156 MFSD5 major facilitator superfamily domain containing 5 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 MGC11308 2006-01-06 2015-08-25 84975 ENSG00000182544 OTTHUMG00000170028 uc001sci.3 AK097576 NM_032889 "CCDS8851|CCDS53796" Q6N075 MGI:2145901 RGD:1305138 MFSD5 +HGNC:24711 MFSD6 major facilitator superfamily domain containing 6 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 FLJ20160 2008-10-29 2014-11-19 54842 ENSG00000151690 OTTHUMG00000132671 uc002urz.2 XM_005246656 CCDS2306 Q6ZSS7 MGI:1922925 RGD:1562317 MFSD6 613476 +HGNC:26656 MFSD6L major facilitator superfamily domain containing 6 like protein-coding gene gene with protein product Approved 17p13.1 17p13.1 FLJ35773 major facilitator superfamily domain containing 6-like 2008-10-29 2016-03-30 2016-03-30 162387 ENSG00000185156 OTTHUMG00000178584 uc002glp.3 AK093092 NM_152599 CCDS11146 Q8IWD5 MGI:2384904 RGD:1307767 MFSD6L +HGNC:26177 MFSD7 major facilitator superfamily domain containing 7 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "FLJ22269|LP2561" Solute carriers 752 2006-02-14 2014-11-18 84179 ENSG00000169026 OTTHUMG00000119001 uc003gax.4 AK025922 NM_032219 "CCDS3338|CCDS75086|CCDS77883" Q6UXD7 12975309 MGI:2442629 RGD:1304688 MFSD7 SLC49A3 objectId:1912 +HGNC:28486 MFSD8 major facilitator superfamily domain containing 8 protein-coding gene gene with protein product Approved 4q28.2 04q28.2 MGC33302 CLN7 ceroid-lipofuscinosis, neuronal 7, late infantile, variant 2007-02-19 2016-10-12 256471 ENSG00000164073 OTTHUMG00000133303 uc003ifp.4 AK074564 NM_152778 CCDS3736 Q8NHS3 17564970 MGI:1919425 RGD:1310132 "Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/|LRG_833|http://www.lrg-sequence.org/LRG/LRG_833" MFSD8 611124 159521 +HGNC:28158 MFSD9 major facilitator superfamily domain containing 9 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 MGC11332 2007-01-12 2014-11-19 84804 ENSG00000135953 OTTHUMG00000130781 uc002tcb.3 NM_032718 CCDS2063 Q8NBP5 MGI:2443548 RGD:1562212 MFSD9 +HGNC:16894 MFSD10 major facilitator superfamily domain containing 10 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "TETRAN|IT10C3" tetracycline transporter like protein 2008-03-03 2014-11-19 10227 ENSG00000109736 OTTHUMG00000122081 uc003gfz.4 L11669 NM_001120 CCDS3365 Q14728 "8353488|17362938" MGI:1915544 RGD:1311900 MFSD10 610977 +HGNC:25458 MFSD11 major facilitator superfamily domain containing 11 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "FLJ22196|FLJ20226" 2007-01-25 2014-11-19 79157 ENSG00000092931 OTTHUMG00000180484 uc060kmz.1 BC002753 NM_024311 "CCDS11750|CCDS56045" O43934 9358160 MGI:1917150 RGD:1307394 MFSD11 +HGNC:28299 MFSD12 major facilitator superfamily domain containing 12 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MGC20700|PP3501" C19orf28 chromosome 19 open reading frame 28 2004-03-24 2011-11-24 2011-11-24 2015-07-22 126321 ENSG00000161091 OTTHUMG00000180766 uc002lxz.5 AF218008 NM_174983 "CCDS42465|CCDS74256" Q6NUT3 12477932 MGI:3604804 RGD:1307722 MFSD12 +HGNC:26196 MFSD13A major facilitator superfamily domain containing 13A protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "FLJ22529|bA18I14.8" "C10orf77|TMEM180" transmembrane protein 180 2004-04-23 2015-10-26 2015-10-26 2015-10-26 79847 ENSG00000138111 OTTHUMG00000018961 uc001kvt.4 AK026182 NM_024789 CCDS7535 Q14CX5 12477932 MGI:1922396 RGD:1309313 +HGNC:52163 MFSD13B major facilitator superfamily domain containing 13B other unknown Approved 16p12.2 16p12.2 2015-10-26 2015-10-26 105371130 ENSG00000230872 OTTHUMG00000154703 NR_136333 MGI:1921716 +HGNC:23363 MFSD14A major facilitator superfamily domain containing 14A protein-coding gene gene with protein product Approved 1p21.2 01p21.2 DKFZP564L0864 HIAT1 hippocampus abundant transcript 1 2003-11-13 2015-11-02 2015-11-02 2016-10-05 64645 ENSG00000156875 OTTHUMG00000010755 uc001dst.4 AK096669 NM_033055 CCDS763 Q96MC6 9299464 MGI:1201609 RGD:1305281 +HGNC:23376 MFSD14B major facilitator superfamily domain containing 14B protein-coding gene gene with protein product Approved 9q22.32 09q22.32 FLJ14753 HIATL1 hippocampus abundant transcript-like 1 2005-07-25 2015-11-02 2015-11-02 2015-11-02 84641 ENSG00000148110 OTTHUMG00000020265 uc004aur.4 AK027659 NM_032558 CCDS6710 Q5SR56 MGI:1913881 RGD:1308377 +HGNC:23672 MFSD14C major facilitator superfamily domain containing 14C other unknown Approved 9q22.33 09q22.33 MGC12945 HIATL2 hippocampus abundant transcript-like 2 2003-12-01 2015-11-02 2015-11-02 2015-11-02 84278 ENSG00000196312 OTTHUMG00000020317 uc004aws.3 BC005058 NM_032318 Q5VZR4 +HGNC:14010 MGA MGA, MAX dimerization protein protein-coding gene gene with protein product Approved 15q15 15q15 "KIAA0518|MAD5|MXD5|FLJ12634" MAX gene associated "MAX dimerization proteins|T-boxes" "637|766" 2002-11-11 2012-11-15 2012-11-15 23269 ENSG00000174197 OTTHUMG00000172719 uc010ucy.2 AB011090 NM_001164273.1 "CCDS55959|CCDS55960" Q8IWI9 MGI:1352483 RGD:1561597 MGA 616061 +HGNC:7043 MGAM maltase-glucoamylase protein-coding gene gene with protein product Approved 7q34 07q34 MGA alpha-glucosidase 1999-09-07 2015-03-19 2015-09-03 8972 ENSG00000257335 OTTHUMG00000158395 uc064isb.1 AF016833 XM_011516670 CCDS47727 O43451 9446624 MGI:1203495 RGD:1308368 MGAM 154360 objectId:2627 "3.2.1.20|3.2.1.3" +HGNC:28101 MGAM2 maltase-glucoamylase 2 (putative) protein-coding gene gene with protein product Approved 7q34 07q34 2015-03-19 2015-09-03 93432 ENSG00000257743 OTTHUMG00000158558 XM_011516692 CCDS78281 Q2M2H8 24870542 +HGNC:29969 MGARP mitochondria localized glutamic acid rich protein protein-coding gene gene with protein product Approved 4q31.1 04q31.1 "OSAP|CESP-1|HUMMR" "ovary-specific acidic protein|corneal endothelium-specific protein 1|hypoxia up-regulated mitochondrial movement regulator" C4orf49 chromosome 4 open reading frame 49 2008-11-28 2012-04-17 2015-11-13 2015-11-13 84709 ENSG00000137463 OTTHUMG00000161325 uc003ihr.1 AF484960 NM_032623 CCDS43269 Q8TDB4 MGI:1914999 RGD:1586369 +HGNC:7044 MGAT1 mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "GNT-1|GLCNAC-TI|GnTI" alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase "MGAT|GLYT1" Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 1991-09-12 2016-03-16 4245 ENSG00000131446 OTTHUMG00000130937 uc003mmi.5 M61829 NM_001114618 CCDS4458 P26572 1827260 MGI:96973 RGD:620097 MGAT1 160995 2.4.1.101 +HGNC:7045 MGAT2 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding gene gene with protein product Approved 14q21.3 14q21.3 GNT-II Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 1993-02-16 2016-10-05 4247 ENSG00000168282 OTTHUMG00000140271 uc001wwr.4 U15128 NM_002408 CCDS9690 Q10469 7635144 MGI:2384966 RGD:620098 Congenital Disorder of Glycosylation pages|http://www.euroglycanet.org/ MGAT2 602616 123216 2.4.1.143 +HGNC:51244 MGAT2P1 MGAT2 pseudogene 1 pseudogene pseudogene Approved Xq26.3 Xq26.3 2014-10-10 2014-10-10 100422588 ENSG00000233861 OTTHUMG00000022492 NG_026768 PGOHUM00000304871 +HGNC:51243 MGAT2P2 MGAT2 pseudogene 2 pseudogene pseudogene Approved Xq26.3 Xq26.3 2014-10-10 2014-10-10 100422589 ENSG00000238200 OTTHUMG00000022493 NG_026891 PGOHUM00000305343 +HGNC:7046 MGAT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding gene gene with protein product Approved 22q13.1 22q13.1 GNT-III Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 1993-08-27 2014-11-19 4248 ENSG00000128268 OTTHUMG00000030185 uc003axv.6 D13789 NM_002409 CCDS13994 Q09327 8370666 MGI:104532 RGD:3084 MGAT3 604621 2.4.1.144 +HGNC:51356 MGAT3-AS1 MGAT3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q13.1 22q13.1 TapSAKI transcript predicting survival in AKI (acute kidney injury) 2014-10-29 2014-10-29 104502417 ENSG00000227188 OTTHUMG00000151100 NR_126469 25294924 +HGNC:7047 MGAT4A mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "GnT-Iva|GnT-4a" mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isoenzyme A Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 1999-09-28 2005-11-16 2016-10-05 11320 ENSG00000071073 OTTHUMG00000130563 uc002sze.3 AB000616 NM_012214 "CCDS2036|CCDS54380" Q9UM21 10024668 MGI:2662992 RGD:1305650 MGAT4A 604623 2.4.1.145 +HGNC:7048 MGAT4B mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B protein-coding gene gene with protein product Approved 5q35.3 05q35.3 GnT-Ivb mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isoenzyme B Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 1999-09-28 2005-11-16 2016-10-05 11282 ENSG00000161013 OTTHUMG00000130912 uc003mks.4 AB000624 NM_014275 "CCDS4448|CCDS4449" Q9UQ53 10372966 MGI:2143974 RGD:1562836 MGAT4B 604561 2.4.1.145 +HGNC:30871 MGAT4C MGAT4 family member C protein-coding gene gene with protein product Approved 12q21.31-q21.32 12q21.31-q21.32 HGNT-IV-H "mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)|MGAT4 family, member C" Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 2006-02-02 2015-11-18 2016-10-11 25834 ENSG00000182050 OTTHUMG00000169846 uc001taj.5 NM_013244 CCDS9030 Q9UBM8 10570912 MGI:1914819 RGD:1307871 MGAT4C 607385 2.4.1.145 +HGNC:43619 MGAT4D MGAT4 family member D protein-coding gene gene with protein product Approved 4q31.1 04q31.1 GnT1IP "glycosyltransferase 54 domain containing 1|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase family, member D|GlcNAcT-I Inhibitory Protein" MGAT4 family, member D Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 2014-07-14 2015-11-18 2016-07-06 152586 ENSG00000205301 OTTHUMG00000161376 XM_011531650 CCDS64066 A6NG13 "20805325|26371870" MGI:1914805 RGD:1310572 610310 2.4.1.- +HGNC:49418 MGAT4EP MGAT4 family member E, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 MGAT4 family, member E, pseudogene 2014-07-14 2014-07-14 2015-11-18 2015-11-18 641515 ENSG00000184774 OTTHUMG00000041380 NR_038135 MGI:1918251 RGD:1308112 +HGNC:7049 MGAT5 mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase protein-coding gene gene with protein product Approved 2q21.2-q21.3 02q21.2-q21.3 GNT-V Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 1994-07-26 2016-10-11 4249 ENSG00000152127 OTTHUMG00000131681 uc061nyh.1 D17716 NM_002410 CCDS2171 Q09328 8292036 MGI:894701 RGD:620100 MGAT5 601774 2.4.1.155 +HGNC:24140 MGAT5B mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B protein-coding gene gene with protein product Approved 17q25.2 17q25.2 "GnT-IX|FLJ25132|GnT-VB" mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isoenzyme B Mannosyl-glycoprotein N-acetylglucosaminyltransferases 435 2004-02-20 2005-11-16 2016-10-05 146664 ENSG00000167889 OTTHUMG00000177278 uc002jth.4 AB109185 NM_144677 "CCDS11751|CCDS45788|CCDS59299" Q3V5L5 "14617637|14623122" MGI:3606200 RGD:1305188 MGAT5B 612441 +HGNC:7056 MGEA5 meningioma expressed antigen 5 (hyaluronidase) protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "MEA5|NCOAT|OGA" nuclear cytoplasmic O-GlcNAcase and acetyltransferase 1999-09-09 2016-10-05 10724 ENSG00000198408 OTTHUMG00000018939 uc001ktv.3 AF036144 NM_012215 "CCDS7520|CCDS44471" O60502 "9811929|16356930" MGI:1932139 RGD:621077 MGEA5 604039 +HGNC:17038 MGLL monoglyceride lipase protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "HU-K5|MGL" Lipases 464 2001-12-13 2016-10-05 11343 ENSG00000074416 OTTHUMG00000159641 uc003ejx.4 BC000551 NM_007283 "CCDS43148|CCDS46902|CCDS58852" Q99685 9495531 MGI:1346042 RGD:71039 MGLL 609699 S33.979 objectId:1399 3.1.1.23 +HGNC:16205 MGME1 mitochondrial genome maintenance exonuclease 1 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "bA504H3.4|DDK1" C20orf72 chromosome 20 open reading frame 72 Exonucleases 544 2001-07-17 2013-01-11 2013-01-11 2014-11-18 92667 ENSG00000125871 OTTHUMG00000031955 uc002wqh.5 NM_052865 "CCDS13131|CCDS82600" Q9BQP7 "23313956|23358826|23434322" MGI:1921778 RGD:1307465 615076 354122 +HGNC:7059 MGMT O-6-methylguanine-DNA methyltransferase protein-coding gene gene with protein product Approved 10q26.3 10q26.3 methylated-DNA--protein-cysteine methyltransferase 1989-10-16 2016-10-05 4255 ENSG00000170430 OTTHUMG00000019261 uc001lkh.3 M29971 NM_002412 CCDS7660 P16455 MGI:96977 RGD:3087 MGMT 156569 352561 +HGNC:7060 MGP matrix Gla protein protein-coding gene gene with protein product Approved 12p12.3 12p12.3 Gla domain containing 1250 1991-08-01 2014-11-19 4256 ENSG00000111341 OTTHUMG00000168740 uc001rcn.3 M58549 NM_000900 "CCDS8669|CCDS53752" P08493 2394711 MGI:96976 RGD:3088 MGP 154870 123219 +HGNC:20254 MGRN1 mahogunin ring finger 1 protein-coding gene gene with protein product Approved 16p13 16p13 "KIAA0544|RNF156" "mahogunin, ring finger 1|mahogunin ring finger 1, E3 ubiquitin protein ligase" Ring finger proteins 58 2003-01-15 2016-03-21 2016-04-25 23295 ENSG00000102858 OTTHUMG00000176436 uc002cxa.4 AB011116 XM_017023091 "CCDS42115|CCDS45401|CCDS45402|CCDS59256" O60291 9628581 MGI:2447670 RGD:1311862 MGRN1 607559 +HGNC:7061 MGST1 microsomal glutathione S-transferase 1 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 MGST-I GST12 Glutathione S-transferases 567 1989-05-24 2016-10-05 4257 ENSG00000008394 OTTHUMG00000168816 uc001rdf.4 U46494 NM_145791 "CCDS8677|CCDS58209" P10620 MGI:1913850 RGD:70927 MGST1 138330 2.5.1.18 +HGNC:7063 MGST2 microsomal glutathione S-transferase 2 protein-coding gene gene with protein product Approved 4q31.1 04q31.1 MGST-II Glutathione S-transferases 567 1997-10-16 2016-10-05 4258 ENSG00000085871 OTTHUMG00000133382 uc021xsf.1 U77604 NM_002413 "CCDS3749|CCDS56339" Q99735 8703034 MGI:2448481 RGD:1311218 MGST2 601733 2.5.1.18 +HGNC:7064 MGST3 microsomal glutathione S-transferase 3 protein-coding gene gene with protein product Approved 1q24.1 01q24.1 GST-III "microsomal glutathione S-transferase III|microsomal GST-3|microsomal GST-III" Glutathione S-transferases 567 1997-10-16 2016-10-05 4259 ENSG00000143198 OTTHUMG00000034627 uc001gdf.4 AF026977 NM_004528 CCDS1249 O14880 9278457 MGI:1913697 RGD:1306373 MGST3 604564 2.5.1.18 +HGNC:7065 MHAC microhydranencephaly phenotype phenotype only Approved 16p13.13-p12.3 16p13.13-p12.3 2000-05-02 2006-05-02 53341 10762554 +HGNC:51291 MHRT myosin heavy chain-associated RNA transcript non-coding RNA RNA, long non-coding Approved 14q11.2 14q11.2 Myheart Long non-coding RNAs 788 2014-09-17 2014-11-26 104564225 NR_126491 25119045 MGI:3642848 616096 +HGNC:7071 MHS2 malignant hyperthermia susceptibility 2 phenotype phenotype only Approved 17q11.2-q24 17q11.2-q24 1992-06-10 1992-11-27 4264 1427885 154275 +HGNC:7073 MHS4 malignant hyperthermia susceptibility 4 phenotype phenotype only Approved 3q13.1 03q13.1 1995-05-19 4265 7887423 600467 +HGNC:7075 MHS6 malignant hyperthermia susceptibility 6 phenotype phenotype only Approved 5p 05p 1997-07-11 1997-07-11 4266 9175745 601888 +HGNC:7076 MIA melanoma inhibitory activity protein-coding gene gene with protein product Approved 19q13.2 19q13.2 CD-RAP MIA family 1300 1999-12-14 2015-09-03 8190 ENSG00000261857 OTTHUMG00000182693 uc060ywx.1 X75450 NM_006533 CCDS12566 Q16674 "7923218|8661134" MGI:109615 RGD:620883 MIA 601340 +HGNC:48352 MIA-RAB4B MIA-RAB4B readthrough (NMD candidate) other readthrough Approved 19q13.2 19q13.2 2013-05-10 2013-05-10 100529262 ENSG00000268975 OTTHUMG00000182782 NR_037775 +HGNC:18432 MIA2 melanoma inhibitory activity 2 protein-coding gene gene with protein product Approved 14q13.2 14q13.2 "FLJ22404|TALI" TANGO1-like MIA family 1300 2003-10-02 2016-09-29 117153 ENSG00000150526 OTTHUMG00000028831 uc001wux.4 BC035981 NM_054024 CCDS9672 Q96PC5 "12586826|27138255" MGI:2159614 RGD:1307353 MIA2 602132 +HGNC:24008 MIA3 MIA family member 3, ER export factor protein-coding gene gene with protein product Approved 1q41 01q41 "UNQ6077|FLJ39207|KIAA0268|TANGO|TANGO1" "C219 reactive peptide|transport and golgi organization" melanoma inhibitory activity family member 3 MIA family 1300 2006-01-24 2006-07-25 2016-06-22 2016-10-05 375056 ENSG00000154305 OTTHUMG00000037543 uc001hnl.4 NM_198551 "CCDS41470|CCDS73035" Q5JRA6 "15183315|21525241" MGI:2443183 RGD:1591600 MIA3 613455 +HGNC:33425 MIAT myocardial infarction associated transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q12.1 22q12.1 "FLJ25967|Rncr2|gomafu|NCRNA00066|LINC00066|lncRNA-MIAT" "non-protein coding RNA 66|long intergenic non-protein coding RNA 66" C22orf35 chromosome 22 open reading frame 35 Long non-coding RNAs 788 2007-03-22 2015-01-29 440823 ENSG00000225783 OTTHUMG00000150985 uc032qkk.2 AB263414 NR_003491 "17066261|17623775|23628989|23726844" MGI:2444886 RGD:7567380 611082 gomafu +HGNC:50731 MIATNB MIAT neighbor (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q12.1 22q12.1 2014-06-13 2014-06-13 102724827 ENSG00000244625 OTTHUMG00000150981 AK026502 NR_110543 +HGNC:21086 MIB1 mindbomb E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "DIP-1|MIB|KIAA1323|ZZANK2|ZZZ6" mindbomb homolog 1 (Drosophila) "Zinc fingers ZZ-type|Ankyrin repeat domain containing" "91|403" 2004-06-18 2012-02-23 2016-10-12 57534 ENSG00000101752 OTTHUMG00000131753 uc002ktq.5 AB037744 NM_020774 CCDS11871 Q86YT6 MGI:2443157 RGD:1307195 LRG_759|http://www.lrg-sequence.org/LRG/LRG_759 MIB1 608677 326843 +HGNC:30577 MIB2 mindbomb E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "skeletrophin|ZZZ5|FLJ39787" ZZANK1 "zinc finger, ZZ type with ankyrin repeat domain 1|mindbomb homolog 2 (Drosophila)" "Zinc fingers ZZ-type|Ankyrin repeat domain containing" "91|403" 2004-12-21 2005-04-01 2012-02-23 2016-04-25 142678 ENSG00000197530 OTTHUMG00000074647 uc001agg.4 AK097106 NM_080875 "CCDS41224|CCDS53261|CCDS53262|CCDS53263|CCDS53264" Q96AX9 12761501 MGI:2679684 RGD:1359469 MIB2 611141 +HGNC:7087 MIC6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7088 MIC7 antigen identified by monoclonal antibody 28.3.7 other unknown Approved 15q11-q22 15q11-q22 1986-01-01 2013-03-26 4270 3871395 108990 +HGNC:7089 MIC9 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7079 MIC12 antigen identified by monoclonal antibody 30.2A8 other unknown Approved 15q11-q22 15q11-q22 2001-06-22 2013-03-26 4273 3979119 107254 +HGNC:7080 MIC17 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7090 MICA MHC class I polypeptide-related sequence A protein-coding gene gene with protein product Approved 6p21.33 06p21.33 PERB11.1 C1-set domain containing 591 1994-05-16 2016-10-05 100507436 ENSG00000204520 OTTHUMG00000031073 uc011inc.3 L14848 NM_001177519 "CCDS56412|CCDS75421" Q29983 8022771 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ MICA 600169 MICA +HGNC:20619 MICAL1 microtubule associated monooxygenase, calponin and LIM domain containing 1 protein-coding gene gene with protein product Approved 6q21 06q21 "MICAL|FLJ11937|DKFZp434B1517|FLJ21739" protein-methionine sulfoxide oxidase MICAL1 NICAL NEDD9 interacting protein with calponin homology and LIM domains LIM domain containing 1218 2003-05-20 2005-02-16 2013-03-26 2016-10-03 64780 ENSG00000135596 OTTHUMG00000015350 uc003ptk.4 AB048948 NM_022765 "CCDS5076|CCDS55047|CCDS69170" Q8TDZ2 11827972 MGI:2385847 RGD:1309386 MICAL1 607129 +HGNC:24693 MICAL2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding gene gene with protein product Approved 11p15.3 11p15.3 KIAA0750 LIM domain containing 1218 2005-02-16 2013-03-26 2016-10-03 9645 ENSG00000133816 OTTHUMG00000165744 uc001mjz.5 AB018293 NM_014632 "CCDS7809|CCDS60726|CCDS60727|CCDS60728" O94851 12110185 MGI:2444947 RGD:1311773 MICAL2 608881 +HGNC:24694 MICAL3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 KIAA0819 LIM domain containing 1218 2005-02-16 2013-03-26 2016-10-03 57553 ENSG00000243156 OTTHUMG00000150067 uc002zng.5 AB037785 XM_011546137 "CCDS46659|CCDS46660|CCDS46661" Q7RTP6 12110185 MGI:2442733 RGD:1359504 MICAL3 608882 +HGNC:25933 MICALCL MICAL C-terminal like protein-coding gene gene with protein product Approved 11p15.3 11p15.3 FLJ14966 2005-11-01 2014-11-18 84953 ENSG00000133808 OTTHUMG00000165777 uc001mkg.1 BK000463 NM_032867 CCDS41620 Q6ZW33 12110185 MGI:1918127 RGD:735042 MICALCL 612355 +HGNC:29804 MICALL1 MICAL like 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "MIRAB13|KIAA1668|MICAL-L1" molecule interacting with Rab13 MICAL-like 1 LIM domain containing 1218 2006-11-24 2015-12-07 2015-12-07 85377 ENSG00000100139 OTTHUMG00000150670 uc003aui.4 BK000466 NM_033386 CCDS13961 Q8N3F8 "11258795|12110185" MGI:105870 RGD:1305415 MICALL1 +HGNC:29672 MICALL2 MICAL like 2 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "MGC46023|FLJ23471|MICAL-L2|JRAB" junctional Rab13-binding protein LIM domain containing 1218 2006-11-24 2016-02-16 2016-02-16 79778 ENSG00000164877 OTTHUMG00000119021 uc003skj.5 BC037988 NM_182924 CCDS5324 Q8IY33 "12110185|16525024" MGI:2444818 RGD:1307875 MICALL2 +HGNC:7091 MICB MHC class I polypeptide-related sequence B protein-coding gene gene with protein product Approved 6p21.33 06p21.33 PERB11.2 C1-set domain containing 591 1994-05-16 2016-10-05 4277 ENSG00000204516 OTTHUMG00000031074 uc003nto.6 NM_005931 "CCDS43449|CCDS75422|CCDS75423" Q29980 8022771 MGI:2179989 RGD:1311714 IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/ MICB 602436 MICB +HGNC:7092 MICC MHC class I polypeptide-related sequence C (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 PERB11.3 MHC class I polypeptide-related sequence C 1994-09-07 2011-05-05 2016-10-05 100129192 ENSG00000226577 OTTHUMG00000031078 NG_027534 8022771 PGOHUM00000243573 +HGNC:7093 MICD MHC class I polypeptide-related sequence D (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 PERB11.4 "MHC class I polypeptide-related sequence D|MHC class I polypeptide-related sequence D, pseudogene" 1994-09-07 2011-05-05 2016-10-05 4279 ENSG00000229390 OTTHUMG00000031082 NG_015983 "8022771|10557312" PGOHUM00000243132 +HGNC:7094 MICE MHC class I polypeptide-related sequence E (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 "dJ377H14.7|PERB11.5" MHC class I polypeptide-related sequence E 1994-09-07 2011-05-05 2016-10-05 4280 ENSG00000273340 OTTHUMG00000031084 NG_002916 PGOHUM00000243127 +HGNC:16801 MICF MHC class I polypeptide-related sequence F (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 MHC class I polypeptide-related sequence F, pseudogene 2003-05-22 2011-05-05 2016-08-17 352957 ENSG00000233265 OTTHUMG00000031085 NG_015984 10557312 +HGNC:16802 MICG MHC class I polypeptide-related sequence G (pseudogene) pseudogene pseudogene Approved 6p22.1 06p22.1 MHC class I polypeptide-related sequence G, pseudogene 2003-05-22 2011-05-05 2016-08-17 352967 ENSG00000237042 OTTHUMG00000031087 NG_002733 10557312 +HGNC:1530 MICU1 mitochondrial calcium uptake 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "CALC|EFHA3|FLJ12684" CBARA1 calcium binding atopy-related autoantigen 1 EF-hand domain containing 863 1999-11-22 2011-06-23 2011-06-23 2013-01-10 10367 ENSG00000107745 OTTHUMG00000018437 uc001jtb.3 Y17711 NM_006077 "CCDS55714|CCDS55715" Q9BPX6 "9806765|20693986" MGI:2384909 RGD:735033 605084 403288 +HGNC:31830 MICU2 mitochondrial calcium uptake 2 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 EFHA1 "EF hand domain family A1|EF-hand domain family, member A1" EF-hand domain containing 863 2004-10-13 2013-03-13 2013-03-13 2014-11-19 221154 ENSG00000165487 OTTHUMG00000067414 uc001uof.4 AK091907 NM_152726 CCDS9297 Q8IYU8 23409044 MGI:1915764 RGD:619739 610632 +HGNC:27820 MICU3 mitochondrial calcium uptake family member 3 protein-coding gene gene with protein product Approved 8p22 08p22 DKFZp313A0139 EFHA2 "EF hand domain family A2|EF-hand domain family, member A2|mitochondrial calcium uptake family, member 3" EF-hand domain containing 863 2004-10-13 2013-03-14 2015-11-18 2015-11-18 286097 ENSG00000155970 OTTHUMG00000096965 uc003wxd.3 BC032868 NM_181723 CCDS5999 Q86XE3 23409044 MGI:1925756 RGD:1563411 610633 +HGNC:7095 MID1 midline 1 protein-coding gene gene with protein product Approved Xp22 Xp22 "OS|FXY|TRIM18|RNF59" Opitz/BBB syndrome "Ring finger proteins|Tripartite motif containing|Fibronectin type III domain containing" "58|59|555" 1997-12-12 2014-06-18 2015-09-03 4281 ENSG00000101871 OTTHUMG00000021127 uc004cti.5 Y13667 XM_011545525 "CCDS14138|CCDS75952|CCDS75953" O15344 "9354791|9425238" MGI:1100537 RGD:2640 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MID1 MID1 300552 123221 +HGNC:20715 MID1IP1 MID1 interacting protein 1 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "STRAIT11499|FLJ10386|MIG12|THRSPL|G12-like" gastrulation specific G12 homolog (zebrafish) MID1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) 2004-09-06 2012-02-23 2015-08-25 58526 ENSG00000165175 OTTHUMG00000024092 uc004dej.6 NM_001098790 CCDS14249 Q9NPA3 MGI:1915291 RGD:1303258 MID1IP1 300961 +HGNC:40932 MID1IP1-AS1 MID1IP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp11.4 Xp11.4 MID1IP1 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100874211 ENSG00000238123 OTTHUMG00000024093 uc033dzm.2 NR_046706 +HGNC:7096 MID2 midline 2 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "FXY2|TRIM1|RNF60|MRX101" "Ring finger proteins|Tripartite motif containing|X-linked mental retardation|Fibronectin type III domain containing" "58|59|103|555" 1999-08-25 2016-10-05 11043 ENSG00000080561 OTTHUMG00000022171 uc004enl.4 NM_012216 "CCDS14532|CCDS14533" Q9UJV3 10400986 MGI:1344333 RGD:1565674 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MID2 MID2 300204 394877 +HGNC:16298 MIDN midnolin protein-coding gene gene with protein product Approved 19p13.3 19p13.3 2001-07-23 2014-11-19 90007 ENSG00000167470 OTTHUMG00000180144 uc002lrp.4 AC004221 XM_005259671 CCDS32864 Q504T8 10974535 MGI:1890222 RGD:1309629 MIDN 606700 +HGNC:25979 MIEF1 mitochondrial elongation factor 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "FLJ20232|MiD51" SMCR7L Smith-Magenis syndrome chromosome region, candidate 7-like 2006-06-26 2013-09-23 2013-09-23 2014-11-19 54471 ENSG00000100335 OTTHUMG00000151105 AL365515 NM_019008 "CCDS13995|CCDS77678" Q9NQG6 "21508961|21701560" MGI:2146020 RGD:1359173 615497 +HGNC:17920 MIEF2 mitochondrial elongation factor 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "MGC23130|MiD49" SMCR7 Smith-Magenis syndrome chromosome region, candidate 7 2002-01-09 2013-09-23 2013-09-23 2014-11-19 125170 ENSG00000177427 OTTHUMG00000059392 BC014973 NM_139162 "CCDS11193|CCDS45624|CCDS45625" Q96C03 "11997338|21508961" MGI:2144199 RGD:1560728 615498 +HGNC:28230 MIEN1 migration and invasion enhancer 1 protein-coding gene gene with protein product Approved 17q12 17q12 "MGC14832|ORB3|XTP4|C35|Rdx12" C17orf37 chromosome 17 open reading frame 37 2004-01-08 2011-09-21 2011-09-21 2015-08-25 84299 ENSG00000141741 OTTHUMG00000133252 uc002hsq.4 AJ308025 NM_032339 "CCDS11344|CCDS82115" Q9BRT3 "17121940|12739007|17503775|21628459" MGI:1913678 RGD:1306682 611802 +HGNC:29657 MIER1 MIER1 transcriptional regulator protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "hMI-ER1|MI-ER1|KIAA1610" "mesoderm induction early response 1 homolog (Xenopus laevis)|mesoderm induction early response 1, transcriptional regulator" Myb/SANT domain containing 532 2005-07-14 2016-01-27 2016-10-05 57708 ENSG00000198160 OTTHUMG00000009194 uc001ddj.2 NM_020948 "CCDS41347|CCDS41348|CCDS53325|CCDS53326|CCDS53327|CCDS53328|CCDS53329|CCDS53330|CCDS60163" Q8N108 "12242014|12482978" MGI:1918398 RGD:1562337 MIER1 616848 +HGNC:29210 MIER2 MIER family member 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 KIAA1193 "KIAA1193|mesoderm induction early response 1, family member 2" Myb/SANT domain containing 532 2004-02-10 2006-04-20 2016-01-27 2016-01-27 54531 ENSG00000105556 OTTHUMG00000180532 uc002lok.2 AB033019 XM_041843 CCDS32855 Q8N344 10574462 MGI:1917677 RGD:1307278 MIER2 +HGNC:26678 MIER3 MIER family member 3 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "FLJ35954|DKFZp686L09111|DKFZp781I1119" mesoderm induction early response 1, family member 3 Myb/SANT domain containing 532 2006-04-20 2016-01-27 2016-01-27 166968 ENSG00000155545 OTTHUMG00000059589 uc003jra.2 BX537798 NM_152622 "CCDS3973|CCDS75248|CCDS78011" Q7Z3K6 12477932 MGI:2442317 RGD:1311241 MIER3 +HGNC:7097 MIF macrophage migration inhibitory factor (glycosylation-inhibiting factor) protein-coding gene gene with protein product Approved 22q11.23 22q11.23 GIF GLIF 1993-10-15 2015-08-25 4282 ENSG00000240972 OTTHUMG00000150773 uc002zyr.2 M25639 NM_002415 CCDS13819 P14174 "7558020|2552447" MGI:96982 RGD:621163 MIF 153620 123227 +HGNC:27669 MIF-AS1 MIF antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q11.23 22q11.23 LOC284889 2014-08-13 2016-09-26 284889 ENSG00000218537 OTTHUMG00000150772 NR_038911 24066864 +HGNC:24030 MIF4GD MIF4G domain containing protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "AD023|MGC45027|SLIP1" SLBP-interacting protein 1 MIFD 2005-12-15 2005-12-15 2016-03-31 57409 ENSG00000125457 OTTHUMG00000179485 uc002jnr.5 CR605810 NM_020679 "CCDS11719|CCDS56044|CCDS58598" A9UHW6 "22532700|18025107" MGI:1916924 RGD:1309685 MIF4GD 612072 +HGNC:24741 MIGA1 mitoguardin 1 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 FLJ35093 FAM73A family with sequence similarity 73 member A 2005-08-11 2016-06-20 2016-06-20 2016-06-20 374986 ENSG00000180488 OTTHUMG00000009766 uc001dhx.5 NM_198549 "CCDS681|CCDS72809" Q8NAN2 26716412 MGI:1924567 RGD:1559958 616773 +HGNC:23621 MIGA2 mitoguardin 2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "FLJ14596|FLJ00199" "C9orf54|FAM73B" "chromosome 9 open reading frame 54|family with sequence similarity 73, member B|family with sequence similarity 73 member B" 2003-12-17 2016-06-20 2016-06-20 2016-10-05 84895 ENSG00000148343 OTTHUMG00000020770 uc004bxa.4 AK074127 NM_032809 CCDS6917 Q7L4E1 26716412 MGI:1922035 RGD:1310887 616774 +HGNC:25715 MIIP migration and invasion inhibitory protein protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "FLJ12438|IIp45" invasion inhibitory protein 45 2009-04-28 2014-11-19 60672 ENSG00000116691 OTTHUMG00000002439 uc001ato.3 AK022500 NM_021933 CCDS143 Q5JXC2 "15867349|14617774" MGI:106506 RGD:1587376 MIIP 608772 +HGNC:27570 MILR1 mast cell immunoglobulin like receptor 1 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "Allergin-1|MCA-32" "allergy inhibitory receptor 1|mast cell antigen 32" C17orf60 "chromosome 17 open reading frame 60|mast cell immunoglobulin-like receptor 1" Immunoglobulin like domain containing 594 2005-12-16 2011-07-12 2016-04-04 2016-04-04 284021 ENSG00000271605 OTTHUMG00000185198 uc010wpz.4 BC053534 NM_001085423 "CCDS74133|CCDS77087|CCDS77088" Q7Z6M3 20526344 MGI:2685731 RGD:620488 +HGNC:33464 MIMT1 MER1 repeat containing imprinted transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 19q13.43 19q13.43 "MIM1|NCRNA00067|LINC00067" "non-protein coding RNA 67|long intergenic non-protein coding RNA 67" 2007-06-13 2008-08-14 2014-11-19 100073347 ENSG00000268654 OTTHUMG00000182170 uc010ett.2 EF110915 NR_024059 17509818 +HGNC:19441 MINA MYC induced nuclear antigen protein-coding gene gene with protein product Approved 3q11.2 03q11.2 "MINA53|FLJ14393|mdig" 2004-02-26 2016-10-05 84864 ENSG00000170854 OTTHUMG00000160107 uc003dsa.3 AB083189 NM_032778 "CCDS2929|CCDS43114" Q8IUF8 12091391 MGI:1914264 RGD:708521 MINA 612049 +HGNC:51653 MINCR MYC-induced long noncoding RNA non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 TCONS_00015189 LINC01604 long intergenic non-protein coding RNA 1604 Long non-coding RNAs 788 2015-04-24 2015-09-23 2015-09-23 2015-09-23 100507316 ENSG00000253716 OTTHUMG00000164976 NR_120682 26351698 +HGNC:17565 MINK1 misshapen like kinase 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "B55|MINK|ZC3|MAP4K6|YSK2" misshapen/NIK-related kinase "misshapen-like kinase 1 (zebrafish)|misshapen-like kinase 1" 2005-01-20 2016-04-04 2016-04-04 50488 ENSG00000141503 OTTHUMG00000177932 uc010vsl.3 AY775058 NM_015716 "CCDS45588|CCDS45589|CCDS45590" Q8N4C8 "10708748|12087176" MGI:1355329 RGD:1359135 MINK1 609426 objectId:2103 +HGNC:32068 MINOS1 mitochondrial inner membrane organizing system 1 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "RP5-1056L3.2|FLJ36999|MIO10|Mic10" C1orf151 chromosome 1 open reading frame 151 2005-07-13 2011-10-04 2011-10-04 2015-06-01 440574 ENSG00000173436 OTTHUMG00000002712 uc001bci.3 AK094318 NM_001032363 "CCDS30620|CCDS72719" Q5TGZ0 21944719 MGI:1913628 RGD:1560187 616574 +HGNC:48338 MINOS1-NBL1 MINOS1-NBL1 readthrough other readthrough Approved 1p36.13 01p36.13 2013-05-09 2013-05-09 100532736 ENSG00000270136 OTTHUMG00000183956 NM_001204088 MGI:104591 +HGNC:25036 MINOS1P1 mitochondrial inner membrane organizing system 1 pseudogene 1 pseudogene pseudogene Approved 13q13.1 13q13.1 CG012 "N4BP2L2IT1|N4BP2L2-IT1" "N4BPL2 intronic transcript 1 (non-protein coding)|N4BP2L2 intronic transcript 1 (non-protein coding)" 2010-08-05 2012-06-18 2012-06-18 2014-11-19 100462953 "AL049782|U50530" NR_051980 8812419 PGOHUM00000256720 +HGNC:44092 MINOS1P2 mitochondrial inner membrane organizing system 1 pseudogene 2 pseudogene pseudogene Approved 17q24.1 17q24.1 2012-06-22 2012-06-22 100289489 ENSG00000270714 OTTHUMG00000184949 NG_022912 PGOHUM00000237148 +HGNC:44093 MINOS1P3 mitochondrial inner membrane organizing system 1 pseudogene 3 pseudogene pseudogene Approved 3p24.1 03p24.1 2012-06-22 2012-06-22 100462954 ENSG00000224237 OTTHUMG00000155687 NG_022915 PGOHUM00000257059 +HGNC:44094 MINOS1P4 mitochondrial inner membrane organizing system 1 pseudogene 4 pseudogene pseudogene Approved 4q21.21 04q21.21 2012-06-22 2012-06-22 100462957 ENSG00000248117 OTTHUMG00000160898 NG_022916 PGOHUM00000257092 +HGNC:7102 MINPP1 multiple inositol-polyphosphate phosphatase 1 protein-coding gene gene with protein product Approved 10q23.2 10q23.2 MIPP multiple inositol polyphosphate histidine phosphatase, 1 Phosphoinositide phosphatases 1079 1998-11-19 2010-05-04 2016-10-05 9562 ENSG00000107789 OTTHUMG00000018678 uc001keu.4 AF046915 XM_017016965 "CCDS7384|CCDS53551|CCDS53552" Q9UNW1 10087200 MGI:1336159 RGD:3089 MINPP1 605391 3.1.3.62 +HGNC:21905 MIOS meiosis regulator for oocyte development protein-coding gene gene with protein product Approved 7p21.3 07p21.3 "FLJ20323|MIO|Sea4" WD repeat-containing protein mio "missing oocyte, meiosis regulator, homolog (Drosophila)|missing oocyte meiosis regulator homolog" 2009-01-27 2016-05-24 2016-05-24 54468 ENSG00000164654 OTTHUMG00000152440 uc003srf.4 NM_019005 CCDS43554 Q9NXC5 "14973288|25512509|23723238" MGI:2182066 RGD:1308432 MIOS 615359 +HGNC:14522 MIOX myo-inositol oxygenase protein-coding gene gene with protein product Approved 22q13.33 22q13.33 kidney-specific protein 32 ALDRL6 aldehyde reductase (aldose reductase) like 6 2002-02-06 2005-06-15 2005-06-15 2016-10-05 55586 ENSG00000100253 OTTHUMG00000150207 uc003blm.2 AF197129 NM_017584 CCDS14092 Q9UGB7 "10944187|11716759" MGI:1891725 RGD:628739 MIOX 606774 +HGNC:50748 MIOXP1 myo-inositol oxygenase pseudogene 1 pseudogene pseudogene Approved 8q21.3 08q21.3 2014-06-13 2014-06-13 100419614 ENSG00000253292 OTTHUMG00000163739 NG_026049 PGOHUM00000249420 +HGNC:7103 MIP major intrinsic protein of lens fiber protein-coding gene gene with protein product Approved 12q13 12q13 "MP26|LIM1|AQP0" Aquaporins 305 2001-06-22 2012-10-02 4284 ENSG00000135517 OTTHUMG00000170571 uc001slh.4 NM_012064 CCDS8919 P30301 "1840563|7536742" MGI:96990 RGD:3090 MIP 154050 123238 objectId:687 +HGNC:7104 MIPEP mitochondrial intermediate peptidase protein-coding gene gene with protein product Approved 13q12.12 13q12.12 MIP 1996-10-30 2016-10-05 4285 ENSG00000027001 OTTHUMG00000016573 uc001uox.5 XM_011535097 CCDS9303 Q99797 9073519 MGI:1917728 RGD:621680 MIPEP 602241 M03.A05 3.4.24.59 +HGNC:39456 MIPEPP1 mitochondrial intermediate peptidase pseudogene 1 pseudogene pseudogene Approved 7q31.1 07q31.1 2011-01-17 2012-03-15 100533682 ENSG00000225358 OTTHUMG00000155189 NG_028675 PGOHUM00000232965 +HGNC:39457 MIPEPP2 mitochondrial intermediate peptidase pseudogene 2 pseudogene pseudogene Approved 1q43 01q43 2011-01-17 2011-01-17 100130099 ENSG00000224783 OTTHUMG00000039535 NG_022759 PGOHUM00000244501 +HGNC:39458 MIPEPP3 mitochondrial intermediate peptidase pseudogene 3 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-01-17 2014-11-19 650794 ENSG00000233325 OTTHUMG00000016538 NR_038939 PGOHUM00000248519 +HGNC:21460 MIPOL1 mirror-image polydactyly 1 protein-coding gene gene with protein product Approved 14q13.3-q21.1 14q13.3-q21.1 CCDC193 2003-10-02 2016-10-11 145282 ENSG00000151338 OTTHUMG00000140252 uc001wuc.4 AY059470 NM_138731 CCDS9664 Q8TD10 "11954550|19667180" MGI:1920740 RGD:6504372 MIPOL1 606850 +HGNC:31499 MIR1-1 microRNA 1-1 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-1-1 MIRN1-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406904 ENSG00000199017 uc011aak.3 NR_029780 609326 MI0000651 +HGNC:16159 MIR1-1HG MIR1-1 host gene other unknown Approved 20q13.33 20q13.33 "dJ353C17.1|MIR133A2HG" MIR133A2 host gene C20orf166 chromosome 20 open reading frame 166 2001-07-17 2014-10-02 2014-10-02 2014-11-18 128826 ENSG00000174407 OTTHUMG00000048000 AL449263 NM_178463 Q9H1L0 +HGNC:31500 MIR1-2 microRNA 1-2 non-coding RNA RNA, micro Approved 18q11.2 18q11.2 hsa-mir-1-2 MIRN1-2 MicroRNAs 476 2004-04-23 2008-12-18 2015-01-29 406905 ENSG00000278753 uc021uic.2 NR_029662 RGD:2325528 610252 MI0000437 +HGNC:31638 MIR7-1 microRNA 7-1 non-coding RNA RNA, micro Approved 9q21.32 09q21.32 hsa-mir-7-1 MIRN7-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407043 ENSG00000207603 uc004ano.1 NR_029605 RGD:2325464 615239 MI0000263 +HGNC:31639 MIR7-2 microRNA 7-2 non-coding RNA RNA, micro Approved 15q26.1 15q26.1 hsa-mir-7-2 MIRN7-2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407044 ENSG00000207703 uc010upm.2 NR_029606 RGD:2325398 MI0000264 +HGNC:31640 MIR7-3 microRNA 7-3 non-coding RNA RNA, micro Approved 19p13.3 19p13.3 hsa-mir-7-3 MIRN7-3 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407045 ENSG00000207630 uc010xij.1 NR_029607 RGD:2325434 MI0000265 +HGNC:30049 MIR7-3HG MIR7-3 host gene non-coding RNA RNA, long non-coding Approved 19p13.3 19p13.3 "PGSF1|PGSF1a|PGSF1b|Huh7|uc002mbe.2" "pituitary gland specific factor 1a|pituitary gland specific factor 1b" "C19orf30|NCRNA00306|LINC00306" "chromosome 19 open reading frame 30|non-protein coding RNA 306|long intergenic non-protein coding RNA 306|MIR7-3 host gene (non-protein coding)" 2004-04-02 2011-09-01 2015-02-20 2015-02-20 284424 ENSG00000176840 OTTHUMG00000150589 uc060rzj.1 AB058892 NR_027148 Q8N6C7 11854097 MIR7-3HG +HGNC:31641 MIR9-1 microRNA 9-1 non-coding RNA RNA, micro Approved 1q22 01q22 hsa-mir-9-1 MIRN9-1 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-09 407046 ENSG00000207933 uc057lzy.1 NR_029691 RGD:4888599 611186 MI0000466 +HGNC:31642 MIR9-2 microRNA 9-2 non-coding RNA RNA, micro Approved 5q14.3 05q14.3 hsa-mir-9-2 MIRN9-2 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 407047 ENSG00000273878 uc021ybf.1 NR_030741 611187 MI0000467 +HGNC:31646 MIR9-3 microRNA 9-3 non-coding RNA RNA, micro Approved 15q26.1 15q26.1 hsa-mir-9-3 MIRN9-3 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407051 ENSG00000207819 uc002bnu.3 NR_029692 RGD:2325463 611188 MI0000468 +HGNC:27388 MIR9-3HG MIR9-3 host gene non-coding RNA RNA, long non-coding Approved 15q26.1 15q26.1 LINC00925 long intergenic non-protein coding RNA 925 2013-05-24 2015-10-09 2015-10-09 2015-10-09 254559 ENSG00000255571 OTTHUMG00000171992 NR_133001 +HGNC:31497 MIR10A microRNA 10a non-coding RNA RNA, micro Approved 17q21.32 17q21.32 hsa-mir-10a MIRN10A MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 406902 ENSG00000257178 uc002inq.3 NR_029608 RGD:2325601 610173 MI0000266 +HGNC:31498 MIR10B microRNA 10b non-coding RNA RNA, micro Approved 2q31.1 02q31.1 hsa-mir-10b MIRN10B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406903 ENSG00000207744 uc010zey.2 NR_029609 RGD:2325397 611576 MI0000267 +HGNC:31543 MIR15A microRNA 15a non-coding RNA RNA, micro Approved 13q14.2 13q14.2 hsa-mir-15a MIRN15A MicroRNAs 476 2004-04-23 2008-12-18 2015-01-29 406948 ENSG00000275952 uc058xbg.1 NR_029485 609703 MI0000069 +HGNC:31544 MIR15B microRNA 15b non-coding RNA RNA, micro Approved 3q25.33 03q25.33 hsa-mir-15b MIRN15B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406949 ENSG00000207779 uc011boz.1 NR_029663 RGD:7488977 MI0000438 +HGNC:31545 MIR16-1 microRNA 16-1 non-coding RNA RNA, micro Approved 13q14.2 13q14.2 hsa-mir-16-1 MIRN16-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406950 ENSG00000208006 uc001vea.2 NR_029486 609704 MI0000070 +HGNC:31546 MIR16-2 microRNA 16-2 non-coding RNA RNA, micro Approved 3q25.33 03q25.33 hsa-mir-16-2 MIRN16-2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406951 ENSG00000198987 uc003fdk.3 NR_029525 RGD:7488974 MI0000115 +HGNC:31547 MIR17 microRNA 17 non-coding RNA RNA, micro Approved 13q31.3 13q31.3 hsa-mir-17 MIRN17 MicroRNAs 476 2004-04-23 2008-12-18 2015-01-29 406952 ENSG00000275042 uc058xst.1 NR_029487 RGD:2325600 609416 MI0000071 +HGNC:23564 MIR17HG miR-17-92a-1 cluster host gene non-coding RNA RNA, long non-coding Approved 13q31.3 13q31.3 "FLJ14178|MIRH1|MIHG1|NCRNA00048|miR-17-92|LINC00048" "non-protein coding RNA 48|long intergenic non-protein coding RNA 48" "C13orf25|MIRHG1" "chromosome 13 open reading frame 25|microRNA host gene 1 (non-protein coding)|MIR17 host gene (non-protein coding)|miR-17-92 cluster host gene" Long non-coding RNAs 788 2004-07-28 2009-07-24 2016-03-17 2016-03-17 407975 ENSG00000215417 OTTHUMG00000017195 uc001vlq.2 AB176707 NR_027349 Q75NE6 "15126345|15944707|16266980|17210683|23551855" 609415 285348 +HGNC:31548 MIR18A microRNA 18a non-coding RNA RNA, micro Approved 13q31.3 13q31.3 "hsa-mir-18|hsa-mir-18a" "MIRN18|MIRN18A" microRNA 18 MicroRNAs 476 2004-04-23 2008-12-18 2005-06-30 2015-01-29 406953 ENSG00000274160 uc058xsu.1 NR_029488 RGD:2325396 609417 MI0000072 +HGNC:32025 MIR18B microRNA 18b non-coding RNA RNA, micro Approved Xq26.2 Xq26.2 hsa-mir-18b MIRN18B MicroRNAs 476 2005-06-30 2008-12-18 2016-10-10 574033 ENSG00000283638 uc022cee.2 NR_029949 MI0001518 +HGNC:31574 MIR19A microRNA 19a non-coding RNA RNA, micro Approved 13q31.3 13q31.3 hsa-mir-19a MIRN19A MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 406979 ENSG00000277328 uc058xsv.1 NR_029489 RGD:2325462 609418 MI0000073 +HGNC:31575 MIR19B1 microRNA 19b-1 non-coding RNA RNA, micro Approved 13q31.3 13q31.3 hsa-mir-19b-1 MIRN19B1 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 406980 ENSG00000275802 uc058xsx.1 NR_029490 RGD:2325433 609419 MI0000074 +HGNC:31576 MIR19B2 microRNA 19b-2 non-coding RNA RNA, micro Approved Xq26.2 Xq26.2 hsa-mir-19b-2 MIRN19B2 MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 406981 ENSG00000283638 uc011mvi.2 NR_029491 RGD:2325599 300722 MI0000075 +HGNC:31577 MIR20A microRNA 20a non-coding RNA RNA, micro Approved 13q31.3 13q31.3 "hsa-mir-20|hsa-mir-20a" "MIRN20|MIRN20A" microRNA 20 MicroRNAs 476 2004-04-23 2008-12-18 2005-06-30 2015-02-03 406982 ENSG00000275534 uc058xsw.1 NR_029492 RGD:2325401 609420 MI0000076 +HGNC:32024 MIR20B microRNA 20b non-coding RNA RNA, micro Approved Xq26.2 Xq26.2 hsa-mir-20b MIRN20B MicroRNAs 476 2005-06-30 2008-12-18 2016-10-10 574032 ENSG00000283638 uc022ced.1 NR_029950 RGD:2325420 300950 MI0001519 +HGNC:31586 MIR21 microRNA 21 non-coding RNA RNA, micro Approved 17q23.1 17q23.1 "hsa-mir-21|MIR-21" MIRN21 MicroRNAs 476 2004-04-23 2008-12-18 2012-03-12 406991 ENSG00000199004 uc002ixv.3 NR_029493 RGD:2325598 611020 MI0000077 +HGNC:31599 MIR22 microRNA 22 non-coding RNA RNA, micro Approved 17p13.3 17p13.3 hsa-mir-22 MIRN22 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 407004 ENSG00000275595 uc032gnj.2 NR_029494 RGD:2325597 612077 MI0000078 +HGNC:28219 MIR22HG MIR22 host gene non-coding RNA RNA, long non-coding Approved 17p13.3 17p13.3 "MGC14376|DKFZp686O06159" C17orf91 "chromosome 17 open reading frame 91|MIR22 host gene (non-protein coding)" Long non-coding RNAs 788 2007-12-20 2011-08-31 2015-02-20 2015-02-20 84981 ENSG00000186594 OTTHUMG00000132197 uc021tnl.2 BX648321 NR_028502 Q0VDD5 "8619474|9110174|24036268" +HGNC:31605 MIR23A microRNA 23a non-coding RNA RNA, micro Approved 19p13.13 19p13.13 hsa-mir-23a MIRN23A MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407010 ENSG00000207980 uc060ujx.1 NR_029495 RGD:2325395 607962 MI0000079 +HGNC:31606 MIR23B microRNA 23b non-coding RNA RNA, micro Approved 9q22.32 09q22.32 hsa-mir-23b MIRN23B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407011 ENSG00000207563 uc004avg.5 NR_029664 RGD:2325596 610723 MI0000439 +HGNC:38913 MIR23C microRNA 23c non-coding RNA RNA, micro Approved X X hsa-mir-23c MicroRNAs 476 2010-09-15 2014-11-19 100500809 ENSG00000264566 uc022btr.2 NR_037414 MI0016010 +HGNC:31607 MIR24-1 microRNA 24-1 non-coding RNA RNA, micro Approved 9q22.32 09q22.32 hsa-mir-24-1 MIRN24-1 MicroRNAs 476 2004-04-23 2008-12-18 2013-02-12 407012 NR_029496 609705 MI0000080 +HGNC:31608 MIR24-2 microRNA 24-2 non-coding RNA RNA, micro Approved 19p13.13 19p13.13 hsa-mir-24-2 MIRN24-2 MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 407013 ENSG00000267519 uc060ujv.1 NR_029497 RGD:2325349 610724 MI0000081 +HGNC:31609 MIR25 microRNA 25 non-coding RNA RNA, micro Approved 7q22.1 07q22.1 hsa-mir-25 MIRN25 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407014 ENSG00000207547 uc003usy.1 NR_029498 RGD:2325594 612150 MI0000082 +HGNC:31610 MIR26A1 microRNA 26a-1 non-coding RNA RNA, micro Approved 3p22.2 03p22.2 hsa-mir-26a-1 MIRN26A1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407015 ENSG00000199075 uc011ayg.2 NR_029499 RGD:2325337 612151 MI0000083 +HGNC:31611 MIR26A2 microRNA 26a-2 non-coding RNA RNA, micro Approved 12q14.1 12q14.1 hsa-mir-26a-2 MIRN26A2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407016 ENSG00000207789 uc001sqn.2 NR_029847 613057 MI0000750 +HGNC:31612 MIR26B microRNA 26b non-coding RNA RNA, micro Approved 2q35 02q35 hsa-mir-26b MIRN26B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407017 ENSG00000199121 uc010zkd.3 NR_029500 RGD:2325394 612152 MI0000084 +HGNC:31613 MIR27A microRNA 27a non-coding RNA RNA, micro Approved 19p13.13 19p13.13 hsa-mir-27a MIRN27A MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407018 ENSG00000207808 uc060ujw.1 NR_029501 RGD:2325592 612153 MI0000085 +HGNC:31614 MIR27B microRNA 27b non-coding RNA RNA, micro Approved 9q22.32 09q22.32 "hsa-mir-27b|MIR-27b" MIRN27B MicroRNAs 476 2004-04-23 2008-12-18 2012-03-12 407019 ENSG00000207864 uc064uma.1 NR_029665 RGD:2325593 610636 MI0000440 +HGNC:31615 MIR28 microRNA 28 non-coding RNA RNA, micro Approved 3q28 03q28 hsa-mir-28 MIRN28 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407020 ENSG00000207651 uc021xiq.1 NR_029502 RGD:2325461 612154 MI0000086 +HGNC:31616 MIR29A microRNA 29a non-coding RNA RNA, micro Approved 7q32.3 07q32.3 "hsa-mir-29|hsa-mir-29a" "MIRN29|MIRN29A" microRNA 29 MicroRNAs 476 2004-04-23 2008-12-18 2004-07-22 2016-10-10 407021 ENSG00000226380 uc011kpj.3 NR_029503 610782 MI0000087 +HGNC:31619 MIR29B1 microRNA 29b-1 non-coding RNA RNA, micro Approved 7q32.3 07q32.3 hsa-mir-29b-1 MIRN29B1 MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 407024 ENSG00000226380 uc003vqm.1 NR_029517 RGD:2325591 610783 MI0000105 +HGNC:31620 MIR29B2 microRNA 29b-2 non-coding RNA RNA, micro Approved 1q32.2 01q32.2 hsa-mir-29b-2 MIRN29B2 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 407025 ENSG00000276752 uc057pas.1 NR_029518 RGD:2314889 MI0000107 +HGNC:31621 MIR29C microRNA 29c non-coding RNA RNA, micro Approved 1q32.2 01q32.2 hsa-mir-29c MIRN29C MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 407026 ENSG00000275668 uc057par.1 NR_029832 610784 MI0000735 +HGNC:31624 MIR30A microRNA 30a non-coding RNA RNA, micro Approved 6q13 06q13 hsa-mir-30a MIRN30A MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407029 ENSG00000207827 uc003pfy.1 NR_029504 RGD:2325588 612329 MI0000088 +HGNC:31625 MIR30B microRNA 30b non-coding RNA RNA, micro Approved 8q24.22 08q24.22 hsa-mir-30b MIRN30B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407030 ENSG00000207582 uc011ljk.2 NR_029666 RGD:2325392 MI0000441 +HGNC:31626 MIR30C1 microRNA 30c-1 non-coding RNA RNA, micro Approved 1p34.2 01p34.2 hsa-mir-30c-1 MIRN30C1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407031 ENSG00000207962 uc001cgg.3 NR_029833 RGD:2325590 615151 MI0000736 +HGNC:31627 MIR30C2 microRNA 30c-2 non-coding RNA RNA, micro Approved 6q13 06q13 hsa-mir-30c-2 MIRN30C2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407032 ENSG00000199094 uc011dya.3 NR_029598 RGD:2325587 MI0000254 +HGNC:31628 MIR30D microRNA 30d non-coding RNA RNA, micro Approved 8q24.22 08q24.22 hsa-mir-30d MIRN30D MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407033 ENSG00000199153 uc011ljl.1 NR_029599 RGD:2325589 MI0000255 +HGNC:31629 MIR30E microRNA 30e non-coding RNA RNA, micro Approved 1p34.2 01p34.2 hsa-mir-30e MIRN30E MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407034 ENSG00000198974 uc001cgf.3 NR_029846 RGD:2325460 MI0000749 +HGNC:31630 MIR31 microRNA 31 non-coding RNA RNA, micro Approved 9p21.3 09p21.3 hsa-mir-31 MIRN31 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407035 ENSG00000199177 uc011lnj.2 NR_029505 RGD:2325391 612155 MI0000089 +HGNC:37187 MIR31HG MIR31 host gene non-coding RNA RNA, long non-coding Approved 9p21.3 09p21.3 LOC554202 MIR31 host gene (non-protein coding) Long non-coding RNAs 788 2011-09-01 2015-02-20 2015-02-20 554202 ENSG00000171889 OTTHUMG00000019681 uc003zpe.3 AK124391 NR_027054 "15364902|22289355|24631686" 616356 +HGNC:31631 MIR32 microRNA 32 non-coding RNA RNA, micro Approved 9q31.3 09q31.3 hsa-mir-32 MIRN32 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407036 ENSG00000207698 uc004bdu.1 NR_029506 RGD:2325586 609355 MI0000090 +HGNC:31634 MIR33A microRNA 33a non-coding RNA RNA, micro Approved 22q13.2 22q13.2 "hsa-mir-33|hsa-mir-33a" "MIRN33|MIRN33A" microRNA 33 MicroRNAs 476 2004-04-23 2008-12-18 2007-10-23 2011-09-12 407039 ENSG00000207932 uc011api.1 NR_029507 RGD:2325408 612156 MI0000091 +HGNC:32791 MIR33B microRNA 33b non-coding RNA RNA, micro Approved 17p11.2 17p11.2 hsa-mir-33b MIRN33B MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693120 ENSG00000207839 uc021trh.1 NR_030361 613486 MI0003646 +HGNC:31635 MIR34A microRNA 34a non-coding RNA RNA, micro Approved 1p36.22 01p36.22 hsa-mir-34a MIRN34A MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 407040 ENSG00000228526 uc021ofw.1 NR_029610 RGD:2325584 611172 MI0000268 +HGNC:51913 MIR34AHG MIR34A host gene non-coding RNA RNA, long non-coding Approved 1p36.22 01p36.22 2015-10-01 2015-10-01 106614088 EF592573 NR_132742 17540599 +HGNC:31636 MIR34B microRNA 34b non-coding RNA RNA, micro Approved 11q23.1 11q23.1 hsa-mir-34b MIRN34B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407041 ENSG00000207811 uc001plm.3 NR_029839 RGD:2325432 611374 MI0000742 +HGNC:31637 MIR34C microRNA 34c non-coding RNA RNA, micro Approved 11q23.1 11q23.1 hsa-mir-34c MIRN34C MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407042 ENSG00000207562 uc021qqj.2 NR_029840 RGD:2325585 611375 MI0000743 +HGNC:31643 MIR92A1 microRNA 92a-1 non-coding RNA RNA, micro Approved 13q31.3 13q31.3 "hsa-mir-92-1|hsa-mir-92a-1" "MIRN92-1|MIRN92A1" microRNA 92-1 MicroRNAs 476 2004-04-23 2008-12-18 2007-10-23 2015-02-03 407048 ENSG00000276018 uc058xsy.1 NR_029508 RGD:2325390 609422 MI0000093 +HGNC:31644 MIR92A2 microRNA 92a-2 non-coding RNA RNA, micro Approved Xq26.2 Xq26.2 "hsa-mir-92-2|hsa-mir-92a-2" "MIRN92-2|MIRN92A2" microRNA 92-2 MicroRNAs 476 2004-04-23 2008-12-18 2007-10-23 2016-10-10 407049 ENSG00000283638 uc004exf.3 NR_029509 RGD:2325583 MI0000094 +HGNC:32920 MIR92B microRNA 92b non-coding RNA RNA, micro Approved 1q22 01q22 hsa-mir-92b MIRN92B MicroRNAs 476 2006-05-16 2008-12-18 2016-10-10 693235 ENSG00000231064 uc021pas.2 NR_030281 RGD:2325488 MI0003560 +HGNC:31645 MIR93 microRNA 93 non-coding RNA RNA, micro Approved 7q22.1 07q22.1 hsa-mir-93 MIRN93 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407050 ENSG00000207757 uc003usz.1 NR_029510 RGD:2325459 612984 MI0000095 +HGNC:31647 MIR95 microRNA 95 non-coding RNA RNA, micro Approved 4 04 hsa-mir-95 MIRN95 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407052 ENSG00000207807 uc032tbq.1 NR_029511 613185 MI0000097 +HGNC:31648 MIR96 microRNA 96 non-coding RNA RNA, micro Approved 7q32.2 07q32.2 hsa-mir-96 "MIRN96|DFNA50" deafness, autosomal dominant 50 MicroRNAs 476 2004-04-23 2008-12-18 2014-11-19 407053 ENSG00000199158 uc003vpc.4 NR_029512 "14757864|19363479" MGI:3619440 RGD:2325582 611606 MI0000098 189333 +HGNC:31649 MIR98 microRNA 98 non-coding RNA RNA, micro Approved Xp11.22 Xp11.22 hsa-mir-98 MIRN98 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 407054 ENSG00000271886 uc004dsr.2 NR_029513 RGD:2325581 300810 MI0000100 +HGNC:31650 MIR99A microRNA 99a non-coding RNA RNA, micro Approved 21q21.1 21q21.1 hsa-mir-99a MIRN99A MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407055 ENSG00000207638 uc002ykd.1 NR_029514 RGD:2325580 614509 MI0000101 +HGNC:1274 MIR99AHG mir-99a-let-7c cluster host gene non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 MONC megakaryocytic oncogenic non-coding RNA "C21orf35|FLJ38295|C21orf34|LINC00478" "chromosome 21 open reading frame 35|chromosome 21 open reading frame 34|long intergenic non-protein coding RNA 478|mir-99a-let-7c cluster host gene (non-protein coding)" Long non-coding RNAs 788 2000-05-23 2014-07-30 2015-02-20 2016-10-05 388815 ENSG00000215386 OTTHUMG00000074377 AF486622 NR_027790 "12036298|25027842" 615964 +HGNC:31651 MIR99B microRNA 99b non-coding RNA RNA, micro Approved 19q13.41 19q13.41 hsa-mir-99b MIRN99B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407056 ENSG00000207550 uc002pxh.1 NR_029843 RGD:2325431 614510 MI0000746 +HGNC:31487 MIR100 microRNA 100 non-coding RNA RNA, micro Approved 11q24.1 11q24.1 hsa-mir-100 MIRN100 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406892 ENSG00000207994 uc001pyh.1 NR_029515 RGD:2325389 613186 MI0000102 +HGNC:39522 MIR100HG mir-100-let-7a-2 cluster host gene non-coding RNA RNA, long non-coding Approved 11q24.1 11q24.1 "AGD1|lncRNA-N2" "adipogenesis down-regulated transcript 1|lncRNA neuronal 2" mir-100-let-7a-2 cluster host gene (non-protein coding) Long non-coding RNAs 788 2011-02-14 2015-02-20 2015-02-20 399959 ENSG00000255248 OTTHUMG00000166035 uc009zbb.2 AK091713 NR_024430 "19531736|21031016|25027842" 615965 +HGNC:31488 MIR101-1 microRNA 101-1 non-coding RNA RNA, micro Approved 1p31.3 01p31.3 hsa-mir-101-1 MIRN101-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406893 ENSG00000199135 uc001dbx.3 NR_029516 RGD:2325348 612511 MI0000103 +HGNC:31489 MIR101-2 microRNA 101-2 non-coding RNA RNA, micro Approved 9p24.1 09p24.1 hsa-mir-101-2 MIRN101-2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406894 ENSG00000199065 uc003ziu.2 NR_029836 RGD:2325609 612512 MI0000739 +HGNC:31490 MIR103A1 microRNA 103a-1 non-coding RNA RNA, micro Approved 5q34 05q34 "hsa-mir-103-1|hsa-mir-103a-1" "MIRN103-1|MIR103-1" microRNA 103-1 MicroRNAs 476 2004-04-23 2011-05-06 2011-05-06 2011-09-12 406895 ENSG00000199035 uc003maa.3 NR_029520 RGD:2325579 613187 MI0000109 +HGNC:31491 MIR103A2 microRNA 103a-2 non-coding RNA RNA, micro Approved 20p13 20p13 "hsa-mir-103-2|hsa-mir-103a-2" "MIRN103-2|MIR103-2" microRNA 103-2 MicroRNAs 476 2004-04-23 2011-05-06 2011-05-06 2011-09-12 406896 ENSG00000199024 uc002wkg.3 NR_029519 RGD:7489028 613188 MI0000108 +HGNC:35384 MIR103B1 microRNA 103b-1 non-coding RNA RNA, micro Approved 5 05 "hsa-mir-103-1-as|hsa-mir-103b-1" "MIRN103-1AS|MIR103-1AS" microRNA 103-1-as MicroRNAs 476 2008-11-03 2011-05-06 2011-05-06 2014-11-19 100302238 ENSG00000283612 NR_031721 MI0007261 +HGNC:35385 MIR103B2 microRNA 103b-2 non-coding RNA RNA, micro Approved 20 20 "hsa-mir-103-2-as|hsa-mir-103b-2" "MIRN103-2AS|MIR103-2AS" microRNA 103-2-as MicroRNAs 476 2008-11-03 2011-05-06 2011-05-06 2014-11-19 100302282 ENSG00000283320 NR_031722 MI0007262 +HGNC:31492 MIR105-1 microRNA 105-1 non-coding RNA RNA, micro Approved Xq28 Xq28 hsa-mir-105-1 MIRN105-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406897 ENSG00000207957 uc004ffo.3 NR_029521 300811 MI0000111 +HGNC:31493 MIR105-2 microRNA 105-2 non-coding RNA RNA, micro Approved Xq28 Xq28 hsa-mir-105-2 MIRN105-2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406898 ENSG00000207818 uc011myf.2 NR_029522 RGD:2325340 300812 MI0000112 +HGNC:31494 MIR106A microRNA 106a non-coding RNA RNA, micro Approved Xq26.2 Xq26.2 hsa-mir-106a MIRN106A MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 406899 ENSG00000283638 uc004exg.1 NR_029523 RGD:2325506 300792 MI0000113 +HGNC:31495 MIR106B microRNA 106b non-coding RNA RNA, micro Approved 7q22.1 07q22.1 hsa-mir-106b MIRN106B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406900 ENSG00000208036 uc003uta.1 NR_029831 RGD:2325388 612983 MI0000734 +HGNC:31496 MIR107 microRNA 107 non-coding RNA RNA, micro Approved 10q23.31 10q23.31 hsa-mir-107 MIRN107 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406901 ENSG00000198997 uc001kgq.3 NR_029524 RGD:2325578 613189 MI0000114 +HGNC:31501 MIR122 microRNA 122 non-coding RNA RNA, micro Approved 18q21.31 18q21.31 "hsa-mir-122a|hsa-mir-122" "MIRN122A|MIRN122" microRNA 122a MicroRNAs 476 2004-04-23 2008-12-18 2007-10-23 2016-10-10 406906 uc060poy.1 NR_029667 RGD:2325577 609582 MI0000442 +HGNC:31502 MIR124-1 microRNA 124-1 non-coding RNA RNA, micro Approved 8p23.1 08p23.1 "hsa-mir-124a-1|hsa-mir-124-1" "MIRN124A1|MIRN124-1" microRNA 124a-1 MicroRNAs 476 2004-04-23 2008-12-18 2007-10-23 2015-01-15 406907 ENSG00000275677 uc003wsw.1 NR_029668 RGD:2325336 609327 MI0000443 +HGNC:31503 MIR124-2 microRNA 124-2 non-coding RNA RNA, micro Approved 8q12.3 08q12.3 "hsa-mir-124a-2|hsa-mir-124-2" "MIRN124A2|MIRN124-2" microRNA 124a-2 MicroRNAs 476 2004-04-23 2008-12-18 2007-10-23 2011-09-12 406908 ENSG00000207816 uc003xvf.3 NR_029669 RGD:2325576 MI0000444 +HGNC:48723 MIR124-2HG MIR124-2 host gene non-coding RNA RNA, long non-coding Approved 8q12.3 08q12.3 LINC00966 "long intergenic non-protein coding RNA 966|MIR124-2 host gene (non-protein coding)" 2013-06-07 2014-04-17 2015-02-20 2015-02-20 100130155 ENSG00000254377 OTTHUMG00000164360 NR_109792 +HGNC:31504 MIR124-3 microRNA 124-3 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 "hsa-mir-124a-3|hsa-mir-124-3" "MIRN124A3|MIRN124-3" microRNA 124a-3 MicroRNAs 476 2004-04-23 2008-12-18 2007-10-23 2011-09-12 406909 ENSG00000207598 uc002yeg.1 NR_029670 RGD:2325458 MI0000445 +HGNC:31505 MIR125A microRNA 125a non-coding RNA RNA, micro Approved 19q13.41 19q13.41 hsa-mir-125a MIRN125A MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406910 ENSG00000208008 uc002pxj.1 NR_029693 RGD:2325387 611191 MI0000469 +HGNC:31506 MIR125B1 microRNA 125b-1 non-coding RNA RNA, micro Approved 11q24.1 11q24.1 hsa-mir-125b-1 MIRN125B1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406911 ENSG00000207971 uc010rzr.1 NR_029671 RGD:2325457 610104 MI0000446 +HGNC:31507 MIR125B2 microRNA 125b-2 non-coding RNA RNA, micro Approved 21q21.1 21q21.1 hsa-mir-125b-2 MIRN125B2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406912 ENSG00000207863 uc002ykf.3 NR_029694 RGD:2325575 610105 MI0000470 +HGNC:31508 MIR126 microRNA 126 non-coding RNA RNA, micro Approved 9q34.3 09q34.3 hsa-mir-126 MIRN126 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406913 ENSG00000199161 uc022bps.1 NR_029695 RGD:4888595 611767 MI0000471 +HGNC:31509 MIR127 microRNA 127 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-127 MIRN127 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406914 ENSG00000207608 uc001yig.4 NR_029696 RGD:2325430 611709 MI0000472 +HGNC:31510 MIR128-1 microRNA 128-1 non-coding RNA RNA, micro Approved 2q21.3 02q21.3 "hsa-mir-128a|hsa-mir-128-1" "MIRN128A|MIRN128-1" microRNA 128a MicroRNAs 476 2004-04-23 2008-12-18 2008-01-07 2011-09-12 406915 ENSG00000207654 uc010zbi.2 NR_029672 RGD:2325574 611774 MI0000447 +HGNC:31511 MIR128-2 microRNA 128-2 non-coding RNA RNA, micro Approved 3p22.3 03p22.3 "hsa-mir-128b|hsa-mir-128-2" "MIRN128B|MIRN128-2" microRNA 128b MicroRNAs 476 2004-04-23 2008-12-18 2008-01-07 2011-09-12 406916 ENSG00000207625 uc011axz.1 NR_029824 RGD:7489034 611769 MI0000727 +HGNC:31512 MIR129-1 microRNA 129-1 non-coding RNA RNA, micro Approved 7q32.1 07q32.1 hsa-mir-129-1 MIRN129-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406917 ENSG00000207705 uc011koi.3 NR_029596 RGD:2325456 MI0000252 +HGNC:31513 MIR129-2 microRNA 129-2 non-coding RNA RNA, micro Approved 11p11.2 11p11.2 hsa-mir-129-2 MIRN129-2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406918 ENSG00000199077 uc001mxo.2 NR_029697 RGD:2325612 MI0000473 +HGNC:31514 MIR130A microRNA 130a non-coding RNA RNA, micro Approved 11q12.1 11q12.1 hsa-mir-130a MIRN130A MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406919 ENSG00000208009 uc001nku.1 NR_029673 RGD:2325385 610175 MI0000448 +HGNC:31515 MIR130B microRNA 130b non-coding RNA RNA, micro Approved 22 22 hsa-mir-130b MIRN130B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406920 ENSG00000207751 uc011aii.1 NR_029845 RGD:2325573 613682 MI0000748 +HGNC:31516 MIR132 microRNA 132 non-coding RNA RNA, micro Approved 17p13.3 17p13.3 hsa-mir-132 MIRN132 MicroRNAs 476 2004-04-23 2008-12-18 2014-06-05 406921 ENSG00000267200 uc010vqt.1 NR_029674 RGD:2325572 610016 MI0000449 +HGNC:31517 MIR133A1 microRNA 133a-1 non-coding RNA RNA, micro Approved 18q11.2 18q11.2 hsa-mir-133a-1 MIRN133A1 MicroRNAs 476 2004-04-23 2008-12-18 2015-01-29 406922 ENSG00000276792 uc021uib.1 NR_029675 610254 MI0000450 +HGNC:49594 MIR133A1HG MIR133A1 host gene non-coding RNA RNA, long non-coding Approved 18q11.2 18q11.2 MIR1-2HG MIR1-2 host gene (non-protein coding) MIR133A1 host gene (non-protein coding) 2014-01-21 2015-02-20 2015-02-20 102723167 ENSG00000265142 OTTHUMG00000179284 BX648566 NR_029662 +HGNC:31518 MIR133A2 microRNA 133a-2 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-133a-2 MIRN133A2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406923 ENSG00000207764 uc011aal.1 NR_029676 610255 MI0000451 +HGNC:31759 MIR133B microRNA 133b non-coding RNA RNA, micro Approved 6p12.2 06p12.2 hsa-mir-133b MIRN133B MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442890 ENSG00000199080 uc010jzo.3 NR_029903 RGD:2325527 610946 MI0000822 +HGNC:31519 MIR134 microRNA 134 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-134 MIRN134 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406924 ENSG00000207993 uc010txo.1 NR_029698 RGD:2325429 610164 MI0000474 +HGNC:31520 MIR135A1 microRNA 135a-1 non-coding RNA RNA, micro Approved 3p21.1 03p21.1 "hsa-mir-135-1|hsa-mir-135a-1" "MIRN135-1|MIRN135A1" microRNA 135-1 MicroRNAs 476 2004-04-23 2008-12-18 2004-07-21 2011-09-12 406925 ENSG00000207926 uc010hmf.3 NR_029677 MI0000452 +HGNC:31521 MIR135A2 microRNA 135a-2 non-coding RNA RNA, micro Approved 12q23.1 12q23.1 "hsa-mir-135-2|hsa-mir-135a-2" "MIRN135-2|MIRN135A2" microRNA 135-2 MicroRNAs 476 2004-04-23 2008-12-18 2004-07-21 2011-09-12 406926 ENSG00000207586 uc001tfb.3 NR_029678 RGD:2325347 MI0000453 +HGNC:31760 MIR135B microRNA 135b non-coding RNA RNA, micro Approved 1q32.1 01q32.1 hsa-mir-135b MIRN135B MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442891 ENSG00000199059 uc010prh.2 NR_029893 RGD:2325610 MI0000810 +HGNC:31522 MIR136 microRNA 136 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-136 MIRN136 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406927 ENSG00000207942 uc010txk.2 NR_029699 RGD:2325384 611710 MI0000475 +HGNC:31523 MIR137 microRNA 137 non-coding RNA RNA, micro Approved 1p21.3 01p21.3 "hsa-mir-137|miR-137" MIRN137 MicroRNAs 476 2004-04-23 2008-12-18 2015-01-29 406928 ENSG00000277990 uc021oqk.1 NR_029679 RGD:2325570 614304 MI0000454 +HGNC:42871 MIR137HG MIR137 host gene non-coding RNA RNA, long non-coding Approved 1p21.3 01p21.3 MIR137 host gene (non-protein coding) 2011-09-02 2015-02-20 2015-02-20 400765 ENSG00000225206 OTTHUMG00000010680 uc001drx.3 AK094607 NR_046105 +HGNC:31524 MIR138-1 microRNA 138-1 non-coding RNA RNA, micro Approved 3p21.32 03p21.32 hsa-mir-138-1 MIRN138-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406929 ENSG00000207954 uc011azu.1 NR_029700 RGD:2325568 613394 MI0000476 +HGNC:31525 MIR138-2 microRNA 138-2 non-coding RNA RNA, micro Approved 16q13 16q13 hsa-mir-138-2 MIRN138-2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406930 ENSG00000207649 uc002ekc.4 NR_029680 RGD:2325569 613395 MI0000455 +HGNC:31526 MIR139 microRNA 139 non-coding RNA RNA, micro Approved 11q13.4 11q13.4 hsa-mir-139 MIRN139 MicroRNAs 476 2004-04-23 2008-12-18 2015-01-29 406931 ENSG00000272036 uc001osp.1 NR_029603 RGD:2325383 615017 MI0000261 +HGNC:31527 MIR140 microRNA 140 non-coding RNA RNA, micro Approved 16q22.1 16q22.1 hsa-mir-140 MIRN140 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406932 ENSG00000208017 uc002exx.2 NR_029681 RGD:2325351 611894 MI0000456 +HGNC:31528 MIR141 microRNA 141 non-coding RNA RNA, micro Approved 12p13.31 12p13.31 hsa-mir-141 MIRN141 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406933 ENSG00000207708 uc009zfm.2 NR_029682 RGD:2325407 612093 MI0000457 +HGNC:31529 MIR142 microRNA 142 non-coding RNA RNA, micro Approved 17q22 17q22 hsa-mir-142 MIRN142 MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 406934 ENSG00000265206 uc060hxw.1 NR_029683 RGD:2325567 615657 MI0000458 +HGNC:31530 MIR143 microRNA 143 non-coding RNA RNA, micro Approved 5q32 05q32 hsa-mir-143 MIRN143 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406935 ENSG00000208035 uc021yfo.4 NR_029684 RGD:2325566 612117 MI0000459 +HGNC:31531 MIR144 microRNA 144 non-coding RNA RNA, micro Approved 17q11.2 17q11.2 hsa-mir-144 MIRN144 MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 406936 ENSG00000264066 uc060dfs.1 NR_029685 RGD:2325428 612070 MI0000460 +HGNC:31532 MIR145 microRNA 145 non-coding RNA RNA, micro Approved 5q32 05q32 "hsa-mir-145|MIR-145" MIRN145 MicroRNAs 476 2004-04-23 2008-12-18 2015-01-29 406937 ENSG00000276365 uc063iom.1 NR_029686 RGD:2325565 611795 MI0000461 +HGNC:31533 MIR146A microRNA 146a non-coding RNA RNA, micro Approved 5q33.3 05q33.3 "hsa-mir-146|hsa-mir-146a" "MIRN146|MIRN146A" microRNA 146 MicroRNAs 476 2004-04-23 2008-12-18 2005-06-30 2015-01-29 406938 ENSG00000277727 uc021yhe.1 NR_029701 RGD:2325382 610566 MI0000477 +HGNC:32079 MIR146B microRNA 146b non-coding RNA RNA, micro Approved 10q24.32 10q24.32 hsa-mir-146b MIRN146B MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574447 ENSG00000202569 uc021pxj.2 NR_030169 RGD:2314885 610567 MI0003129 +HGNC:31534 MIR147A microRNA 147a non-coding RNA RNA, micro Approved 9q33.2 09q33.2 hsa-mir-147 "MIRN147|MIR147" microRNA 147 MicroRNAs 476 2004-04-23 2011-11-14 2011-11-14 2011-11-14 406939 ENSG00000207814 uc011lxv.1 NR_029604 MI0000262 +HGNC:33655 MIR147B microRNA 147b non-coding RNA RNA, micro Approved 15q21.1 15q21.1 hsa-mir-147b MIRN147B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126311 ENSG00000211519 uc021skp.1 NR_030599 RGD:2325507 MI0005544 +HGNC:31535 MIR148A microRNA 148a non-coding RNA RNA, micro Approved 7p15.2 07p15.2 "hsa-mir-148|hsa-mir-148a" "MIRN148|MIRN148A" microRNA 148 MicroRNAs 476 2004-04-23 2008-12-18 2004-07-21 2011-09-12 406940 ENSG00000199085 uc011jzf.3 NR_029597 613786 MI0000253 +HGNC:31761 MIR148B microRNA 148b non-coding RNA RNA, micro Approved 12q13.13 12q13.13 hsa-mir-148b MIRN148B MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442892 ENSG00000199122 uc010sou.3 NR_029894 RGD:2325617 613787 MI0000811 +HGNC:31536 MIR149 microRNA 149 non-coding RNA RNA, micro Approved 2q37.3 02q37.3 hsa-mir-149 MIRN149 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406941 ENSG00000207611 uc010zog.2 NR_029702 615209 MI0000478 +HGNC:31537 MIR150 microRNA 150 non-coding RNA RNA, micro Approved 19q13.33 19q13.33 hsa-mir-150 MIRN150 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406942 ENSG00000207782 uc010yaw.2 NR_029703 RGD:2325455 611114 MI0000479 +HGNC:31762 MIR151A microRNA 151a non-coding RNA RNA, micro Approved 8q24.3 08q24.3 hsa-mir-151 "MIRN151|MIR151" microRNA 151 MicroRNAs 476 2004-07-22 2011-11-14 2011-11-14 2015-01-29 442893 ENSG00000254324 OTTHUMG00000164277 uc022bbw.3 NR_029892 RGD:2325400 MI0000809 +HGNC:41588 MIR151B microRNA 151b non-coding RNA RNA, micro Approved 14 14 hsa-mir-151b MicroRNAs 476 2011-05-02 2014-11-19 100616247 ENSG00000265154 uc032blj.1 NR_039601 RGD:4888536 MI0003772 +HGNC:31538 MIR152 microRNA 152 non-coding RNA RNA, micro Approved 17q21.32 17q21.32 hsa-mir-152 MIRN152 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406943 ENSG00000207947 uc010wld.2 NR_029687 RGD:2325564 613788 MI0000462 +HGNC:31539 MIR153-1 microRNA 153-1 non-coding RNA RNA, micro Approved 2q35 02q35 hsa-mir-153-1 MIRN153-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406944 ENSG00000207647 uc010zld.1 NR_029688 MI0000463 +HGNC:31540 MIR153-2 microRNA 153-2 non-coding RNA RNA, micro Approved 7q36.3 07q36.3 hsa-mir-153-2 MIRN153-2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406945 ENSG00000207960 uc011kwb.1 NR_029689 RGD:2325563 MI0000464 +HGNC:31541 MIR154 microRNA 154 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-154 MIRN154 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406946 ENSG00000207978 uc010awg.3 NR_029704 RGD:2325562 MI0000480 +HGNC:31542 MIR155 microRNA 155 non-coding RNA RNA, micro Approved 21q21.3 21q21.3 hsa-mir-155 MIRN155 MicroRNAs 476 2004-04-23 2008-12-18 2015-01-29 406947 ENSG00000275402 uc021why.1 AP000223 NR_030784 RGD:7489038 609337 MI0000681 +HGNC:35460 MIR155HG MIR155 host gene non-coding RNA RNA, long non-coding Approved 21q21.3 21q21.3 "BIC|NCRNA00172" "B-cell receptor inducible|BIC transcript|non-protein coding RNA 172" MIRHG2 "microRNA host gene 2 (non-protein coding)|MIR155 host gene (non-protein coding)" Long non-coding RNAs 788 2009-02-17 2009-07-24 2015-02-20 2015-02-20 114614 ENSG00000234883 OTTHUMG00000078367 uc002ylm.5 AF402776 NR_001458 "21296997|23246696" RGD:10045371 +HGNC:31590 MIR181A1 microRNA 181a-1 non-coding RNA RNA, micro Approved 1q32.1 01q32.1 hsa-mir-213 "MIRN213|MIRN181A1" microRNA 213 MicroRNAs 476 2004-04-23 2008-12-18 2006-05-16 2011-09-12 406995 ENSG00000207759 uc001guy.3 NR_029626 612742 MI0000289 +HGNC:48659 MIR181A1HG MIR181A1 host gene non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 familial acute myelogenous leukemia related factor MIR181A1 host gene (non-protein coding) 2013-06-03 2015-02-20 2015-02-20 100131234 ENSG00000229989 OTTHUMG00000035888 NR_040073 +HGNC:31549 MIR181A2 microRNA 181a-2 non-coding RNA RNA, micro Approved 9q33.3 09q33.3 hsa-mir-181a "MIRN181A|MIRN181A2" microRNA 181a MicroRNAs 476 2004-04-23 2008-12-18 2006-05-16 2011-09-12 406954 ENSG00000207595 uc004bot.3 NR_029611 RGD:2325335 612743 MI0000269 +HGNC:37188 MIR181A2HG MIR181A2 host gene non-coding RNA RNA, long non-coding Approved 9q33.3 09q33.3 MIR181A2 host gene (non-protein coding) 2009-08-18 2015-02-20 2015-02-20 100379345 ENSG00000224020 OTTHUMG00000020657 uc064vqh.1 NR_038975 15364906 +HGNC:31550 MIR181B1 microRNA 181b-1 non-coding RNA RNA, micro Approved 1q32.1 01q32.1 hsa-mir-181b-1 MIRN181B1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406955 ENSG00000207975 uc001gux.1 NR_029612 612744 MI0000270 +HGNC:31551 MIR181B2 microRNA 181b-2 non-coding RNA RNA, micro Approved 9q33.3 09q33.3 hsa-mir-181b-2 MIRN181B2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406956 ENSG00000207737 uc004bou.3 NR_029782 RGD:2325454 612745 MI0000683 +HGNC:31552 MIR181C microRNA 181c non-coding RNA RNA, micro Approved 19p13.13 19p13.13 hsa-mir-181c MIRN181C MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406957 ENSG00000207613 uc010xnh.2 NR_029613 RGD:2325381 612746 MI0000271 +HGNC:32089 MIR181D microRNA 181d non-coding RNA RNA, micro Approved 19p13.13 19p13.13 hsa-mir-181d MIRN181D MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574457 ENSG00000207585 uc010dzg.2 NR_030179 RGD:2325361 MI0003139 +HGNC:31553 MIR182 microRNA 182 non-coding RNA RNA, micro Approved 7q32.2 07q32.2 hsa-mir-182 MIRN182 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406958 ENSG00000207990 uc011kpb.2 NR_029614 611607 MI0000272 +HGNC:31554 MIR183 microRNA 183 non-coding RNA RNA, micro Approved 7q32.2 07q32.2 hsa-mir-183 MIRN183 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406959 ENSG00000207691 uc003vpd.2 NR_029615 RGD:2325560 611608 MI0000273 +HGNC:31555 MIR184 microRNA 184 non-coding RNA RNA, micro Approved 15q25.1 15q25.1 hsa-mir-184 MIRN184 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406960 ENSG00000207695 uc010uni.2 NR_029705 RGD:2325559 613146 MI0000481 299169 +HGNC:31556 MIR185 microRNA 185 non-coding RNA RNA, micro Approved 22q11.21 22q11.21 hsa-mir-185 MIRN185 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406961 ENSG00000208023 uc011ahj.3 NR_029706 RGD:2325380 615576 MI0000482 +HGNC:31557 MIR186 microRNA 186 non-coding RNA RNA, micro Approved 1p31.1 01p31.1 hsa-mir-186 MIRN186 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406962 ENSG00000207721 uc010oqr.1 NR_029707 RGD:2325558 MI0000483 +HGNC:31558 MIR187 microRNA 187 non-coding RNA RNA, micro Approved 18q12.2 18q12.2 hsa-mir-187 MIRN187 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406963 ENSG00000207797 uc010dmv.2 NR_029616 RGD:2325557 612698 MI0000274 +HGNC:31559 MIR188 microRNA 188 non-coding RNA RNA, micro Approved Xp11.23 Xp11.23 hsa-mir-188 MIRN188 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406964 ENSG00000207768 uc011mnv.2 NR_029708 RGD:2325505 MI0000484 +HGNC:31560 MIR190A microRNA 190a non-coding RNA RNA, micro Approved 15q22.2 15q22.2 hsa-mir-190 "MIRN190|MIR190" microRNA 190 MicroRNAs 476 2004-04-23 2011-11-14 2011-11-14 2011-11-14 406965 ENSG00000211137 uc010uid.1 NR_029709 RGD:2325453 615845 MI0000486 +HGNC:33656 MIR190B microRNA 190b non-coding RNA RNA, micro Approved 1q21.3 01q21.3 hsa-mir-190b MIRN190B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126346 ENSG00000215938 uc021pac.2 NR_030600 RGD:2325504 MI0005545 +HGNC:31561 MIR191 microRNA 191 non-coding RNA RNA, micro Approved 3p21.31 03p21.31 hsa-mir-191 MIRN191 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406966 ENSG00000207605 uc003cvo.2 NR_029690 RGD:2325556 615150 MI0000465 +HGNC:31562 MIR192 microRNA 192 non-coding RNA RNA, micro Approved 11q13.1 11q13.1 hsa-mir-192 MIRN192 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406967 ENSG00000207648 uc058dbg.1 NR_029578 RGD:2325427 610939 MI0000234 +HGNC:31563 MIR193A microRNA 193a non-coding RNA RNA, micro Approved 17q11.2 17q11.2 "hsa-mir-193|hsa-mir-193a" "MIRN193|MIRN193A" microRNA 193 MicroRNAs 476 2004-04-23 2008-12-18 2005-06-30 2011-09-12 406968 ENSG00000207614 uc010wbv.1 NR_029710 RGD:4888546 614733 MI0000487 +HGNC:32087 MIR193B microRNA 193b non-coding RNA RNA, micro Approved 16p13.12 16p13.12 hsa-mir-193b MIRN193B MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574455 ENSG00000207639 uc021tdg.1 NR_030177 614734 MI0003137 +HGNC:51945 MIR193BHG MIR193B host gene non-coding RNA RNA, long non-coding Approved 16p13.12 16p13.12 2015-10-08 2015-10-08 100129781 ENSG00000262454 OTTHUMG00000177423 NR_132983 +HGNC:31564 MIR194-1 microRNA 194-1 non-coding RNA RNA, micro Approved 1q41 01q41 hsa-mir-194-1 MIRN194-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406969 ENSG00000207624 uc010puj.2 NR_029711 RGD:2325555 610940 MI0000488 +HGNC:31565 MIR194-2 microRNA 194-2 non-coding RNA RNA, micro Approved 11q13.1 11q13.1 hsa-mir-194-2 MIRN194-2 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 406970 ENSG00000277225 uc010rns.1 NR_029829 RGD:2325554 610941 MI0000732 +HGNC:51946 MIR194-2HG MIR194-2 host gene non-coding RNA RNA, long non-coding Approved 11q13.1 11q13.1 2015-10-08 2015-10-08 105369343 ENSG00000229719 OTTHUMG00000066834 NR_133639 +HGNC:31566 MIR195 microRNA 195 non-coding RNA RNA, micro Approved 17p13.1 17p13.1 hsa-mir-195 MIRN195 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 406971 ENSG00000275739 uc060ahh.1 NR_029712 RGD:2325346 610718 MI0000489 +HGNC:31567 MIR196A1 microRNA 196a-1 non-coding RNA RNA, micro Approved 17q21.32 17q21.32 "hsa-mir-196-1|hsa-mir-196a-1" "MIRN196-1|MIRN196A1" "microRNA 196-1|microRNA 196a" MicroRNAs 476 2004-04-23 2008-12-18 2008-01-07 2011-09-12 406972 ENSG00000210741 uc010wln.1 NR_029582 RGD:2325418 608632 MI0000238 +HGNC:31568 MIR196A2 microRNA 196a-2 non-coding RNA RNA, micro Approved 12q13.13 12q13.13 "hsa-mir-196-2|hsa-mir-196a-2" "MIRN196-2|MIRN196A2" microRNA 196-2 MicroRNAs 476 2004-04-23 2008-12-18 2004-07-22 2011-09-12 406973 ENSG00000207924 uc001seo.3 NR_029617 RGD:2314888 609687 MI0000279 +HGNC:31790 MIR196B microRNA 196b non-coding RNA RNA, micro Approved 7p15.2 07p15.2 hsa-mir-196b MIRN196B MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442920 ENSG00000207584 uc064cgz.1 NR_029911 RGD:2314882 609688 MI0001150 +HGNC:31569 MIR197 microRNA 197 non-coding RNA RNA, micro Approved 1p13.3 01p13.3 hsa-mir-197 MIRN197 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406974 ENSG00000207709 uc010ovq.1 NR_029583 611189 MI0000239 +HGNC:31570 MIR198 microRNA 198 non-coding RNA RNA, micro Approved 3q13.33 03q13.33 hsa-mir-198 MIRN198 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406975 NR_029584 MI0000240 +HGNC:31571 MIR199A1 microRNA 199a-1 non-coding RNA RNA, micro Approved 19p13.2 19p13.2 hsa-mir-199a-1 MIRN199A1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406976 ENSG00000207752 uc010xlj.1 NR_029586 610719 MI0000242 +HGNC:31572 MIR199A2 microRNA 199a-2 non-coding RNA RNA, micro Approved 1q24.3 01q24.3 hsa-mir-199a-2 MIRN199A2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406977 ENSG00000208024 uc057nid.1 NR_029618 RGD:2325378 610720 MI0000281 +HGNC:31573 MIR199B microRNA 199b non-coding RNA RNA, micro Approved 9q34.11 09q34.11 hsa-mir-199b MIRN199B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406978 ENSG00000207581 uc004bue.1 NR_029619 614791 MI0000282 +HGNC:31578 MIR200A microRNA 200a non-coding RNA RNA, micro Approved 1p36.33 01p36.33 hsa-mir-200a MIRN200A MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406983 ENSG00000207607 uc010nye.2 NR_029834 RGD:2325426 612090 MI0000737 +HGNC:31579 MIR200B microRNA 200b non-coding RNA RNA, micro Approved 1p36.33 01p36.33 hsa-mir-200b MIRN200B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406984 ENSG00000207730 uc001acw.3 NR_029639 RGD:2325552 612091 MI0000342 +HGNC:31580 MIR200C microRNA 200c non-coding RNA RNA, micro Approved 12p13.31 12p13.31 hsa-mir-200c MIRN200C MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406985 ENSG00000207713 uc001qsc.2 NR_029779 RGD:2325553 612092 MI0000650 +HGNC:32080 MIR202 microRNA 202 non-coding RNA RNA, micro Approved 10q26.3 10q26.3 hsa-mir-202 MIRN202 MicroRNAs 476 2005-07-15 2008-12-18 2015-02-03 574448 ENSG00000278352 uc009ybh.2 NR_030170 RGD:2325486 MI0003130 +HGNC:49402 MIR202HG MIR202 host gene non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 MIR202 host gene (non-protein coding) 2013-10-28 2015-02-20 2015-02-20 101927671 ENSG00000166917 OTTHUMG00000170605 DB447466 NR_108078 +HGNC:31581 MIR203A microRNA 203a non-coding RNA RNA, micro Approved 14q32.33 14q32.33 hsa-mir-203 "MIRN203|MIR203" microRNA 203 MicroRNAs 476 2004-04-23 2014-03-17 2014-03-17 2014-03-17 406986 ENSG00000207568 NR_029620 RGD:4888612 611899 MI0000283 +HGNC:41811 MIR203B microRNA 203b non-coding RNA RNA, micro Approved 14 14 hsa-mir-3545 MIR3545 microRNA 3545 MicroRNAs 476 2011-05-02 2014-03-17 2014-03-17 2014-11-19 100616173 ENSG00000283165 NR_039859 MI0017343 +HGNC:31582 MIR204 microRNA 204 non-coding RNA RNA, micro Approved 9q21.12 09q21.12 hsa-mir-204 MIRN204 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406987 ENSG00000207935 uc004aih.2 NR_029621 RGD:2325551 610942 MI0000284 +HGNC:31583 MIR205 microRNA 205 non-coding RNA RNA, micro Approved 1q32.2 01q32.2 hsa-mir-205 MIRN205 MicroRNAs 476 2004-04-23 2008-12-18 2015-02-03 406988 ENSG00000276335 uc010psk.2 NR_029622 RGD:2325377 613147 MI0000285 +HGNC:43562 MIR205HG MIR205 host gene non-coding RNA RNA, long non-coding Approved 1q32.2 01q32.2 LINC00510 long intergenic non-protein coding RNA 510 MIR205 host gene (non-protein coding) 2011-11-07 2015-02-20 2015-02-20 642587 ENSG00000230937 OTTHUMG00000036267 uc057pbj.1 XM_017002058 +HGNC:31584 MIR206 microRNA 206 non-coding RNA RNA, micro Approved 6p12.2 06p12.2 hsa-mir-206 MIRN206 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406989 ENSG00000207604 uc003paj.2 NR_029713 RGD:2325550 611599 MI0000490 +HGNC:31585 MIR208A microRNA 208a non-coding RNA RNA, micro Approved 14q11.2 14q11.2 "hsa-mir-208|hsa-mir-208a" "MIRN208|MIRN208A" microRNA 208 MicroRNAs 476 2004-04-23 2008-12-18 2008-01-07 2011-09-12 406990 ENSG00000199157 uc010tnn.3 NR_029595 RGD:7489029 611116 MI0000251 +HGNC:33669 MIR208B microRNA 208b non-coding RNA RNA, micro Approved 14q11.2 14q11.2 hsa-mir-208b MIRN208B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126336 ENSG00000215991 uc021rqy.1 NR_030624 RGD:4888543 613613 MI0005570 +HGNC:31587 MIR210 microRNA 210 non-coding RNA RNA, micro Approved 11p15.5 11p15.5 hsa-mir-210 MIRN210 MicroRNAs 476 2004-04-23 2008-12-18 2013-06-03 406992 ENSG00000199038 OTTHUMG00000186068 uc010qwa.1 NR_029623 RGD:2314887 612982 MI0000286 +HGNC:39524 MIR210HG MIR210 host gene non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 MIR210 host gene (non-protein coding) 2011-02-14 2015-02-20 2015-11-04 100506211 ENSG00000247095 OTTHUMG00000165284 uc009yby.3 NR_038262 26400545 +HGNC:31588 MIR211 microRNA 211 non-coding RNA RNA, micro Approved 15q13.3 15q13.3 hsa-mir-211 MIRN211 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406993 ENSG00000207702 uc010ubm.1 NR_029624 RGD:2325549 613753 MI0000287 +HGNC:31589 MIR212 microRNA 212 non-coding RNA RNA, micro Approved 17p13.3 17p13.3 hsa-mir-212 MIRN212 MicroRNAs 476 2004-04-23 2008-12-18 2014-05-20 406994 ENSG00000267195 OTTHUMG00000180186 uc010vqu.1 NR_029625 RGD:2325376 613487 MI0000288 +HGNC:31591 MIR214 microRNA 214 non-coding RNA RNA, micro Approved 1q24.3 01q24.3 hsa-mir-214 MIRN214 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406996 ENSG00000207949 uc021pev.3 NR_029627 RGD:4888566 610721 MI0000290 +HGNC:31592 MIR215 microRNA 215 non-coding RNA RNA, micro Approved 1q41 01q41 hsa-mir-215 MIRN215 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406997 ENSG00000207590 uc010pui.2 NR_029628 610943 MI0000291 +HGNC:31593 MIR216A microRNA 216a non-coding RNA RNA, micro Approved 2p16.1 02p16.1 "hsa-mir-216|hsa-mir-216a" "MIRN216|MIRN216A" microRNA 216 MicroRNAs 476 2004-04-23 2008-12-18 2007-10-23 2011-09-12 406998 ENSG00000207798 uc010ype.1 NR_029629 RGD:2325406 610944 MI0000292 +HGNC:33668 MIR216B microRNA 216b non-coding RNA RNA, micro Approved 2p16.1 02p16.1 hsa-mir-216b MIRN216B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126319 ENSG00000211520 uc021vhx.1 NR_030623 RGD:4888592 MI0005569 +HGNC:31594 MIR217 microRNA 217 non-coding RNA RNA, micro Approved 2p16.1 02p16.1 "hsa-mir-217|miR-217" MIRN217 MicroRNAs 476 2004-04-23 2008-12-18 2012-03-12 406999 ENSG00000207548 uc010ypd.2 NR_029630 RGD:2325547 615096 MI0000293 +HGNC:50537 MIR217HG MIR217 host gene non-coding RNA RNA, long non-coding Approved 2p16.1 02p16.1 "MIR216AHG|MIR216BHG" MIR217 host gene (non-protein coding) 2014-05-20 2015-02-20 2015-02-20 104355290 ENSG00000226702 OTTHUMG00000152029 DA732292 NR_126406 +HGNC:31595 MIR218-1 microRNA 218-1 non-coding RNA RNA, micro Approved 4p15.31 04p15.31 hsa-mir-218-1 MIRN218-1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407000 ENSG00000207732 uc011bxl.2 NR_029631 616770 MI0000294 +HGNC:31596 MIR218-2 microRNA 218-2 non-coding RNA RNA, micro Approved 5q34 05q34 hsa-mir-218-2 MIRN218-2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407001 ENSG00000207739 uc010jjh.3 NR_029632 RGD:2325546 616771 MI0000295 +HGNC:31597 MIR219A1 microRNA 219a-1 non-coding RNA RNA, micro Approved 6p21.32 06p21.32 hsa-mir-219-1 "MIRN219-1|MIR219-1" microRNA 219-1 MicroRNAs 476 2004-04-23 2014-03-17 2014-03-17 2014-03-17 407002 ENSG00000199036 NR_029633 RGD:2325545 611500 MI0000296 +HGNC:31598 MIR219A2 microRNA 219a-2 non-coding RNA RNA, micro Approved 9q34.11 09q34.11 hsa-mir-219-2 "MIRN219-2|MIR219-2" microRNA 219-2 MicroRNAs 476 2004-04-23 2014-03-17 2014-03-17 2014-03-17 407003 ENSG00000207955 NR_029837 MI0000740 +HGNC:41823 MIR219B microRNA 219b non-coding RNA RNA, micro Approved 9q34.11 09q34.11 hsa-mir-2964a MIR2964A microRNA 2964a MicroRNAs 476 2011-05-02 2014-03-17 2014-03-17 2014-11-19 100616335 ENSG00000283335 NR_039815 MI0017299 +HGNC:31600 MIR220A entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0000297 +HGNC:33640 MIR220B entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0005529 +HGNC:33647 MIR220C entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0005536 +HGNC:31601 MIR221 microRNA 221 non-coding RNA RNA, micro Approved Xp11.3 Xp11.3 hsa-mir-221 MIRN221 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407006 ENSG00000207870 uc011mle.1 NR_029635 RGD:2325451 300568 MI0000298 +HGNC:31602 MIR222 microRNA 222 non-coding RNA RNA, micro Approved Xp11.3 Xp11.3 hsa-mir-222 MIRN222 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407007 ENSG00000207725 uc011mlf.2 NR_029636 RGD:2325544 300569 MI0000299 +HGNC:49555 MIR222HG MIR222 host gene non-coding RNA RNA, long non-coding Approved Xp11.3 Xp11.3 Lnc-Ang362 MIR222 host gene (non-protein coding) Long non-coding RNAs 788 2014-01-14 2015-02-20 2015-02-20 104457406 ENSG00000270069 OTTHUMG00000184015 23697773 +HGNC:31603 MIR223 microRNA 223 non-coding RNA RNA, micro Approved Xq12 Xq12 hsa-mir-223 MIRN223 MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 407008 ENSG00000274536 uc022byg.1 NR_029637 RGD:2325543 300694 MI0000300 +HGNC:31604 MIR224 microRNA 224 non-coding RNA RNA, micro Approved Xq28 Xq28 hsa-mir-224 MIRN224 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407009 ENSG00000207621 uc033fab.1 NR_029638 RGD:2325530 300769 MI0000301 +HGNC:31617 MIR296 microRNA 296 non-coding RNA RNA, micro Approved 20q13.32 20q13.32 hsa-mir-296 MIRN296 MicroRNAs 476 2004-04-23 2008-12-18 2016-10-10 407022 ENSG00000268649 uc002xzr.1 NR_029844 RGD:2325345 610945 MI0000747 +HGNC:33691 MIR297 microRNA 297 non-coding RNA RNA, micro Approved 4q25 04q25 hsa-mir-297 MIRN297 MicroRNAs 476 2007-10-25 2008-12-18 2014-11-19 100126354 ENSG00000215961 uc032tty.1 NR_030643 615520 MI0005775 +HGNC:33634 MIR298 microRNA 298 non-coding RNA RNA, micro Approved 20q13.32 20q13.32 hsa-mir-298 MIRN298 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126296 ENSG00000216031 uc021wfk.1 NR_030580 RGD:2325373 614914 MI0005523 +HGNC:31618 MIR299 microRNA 299 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-299 MIRN299 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 407023 ENSG00000207749 uc001yjx.2 NR_029841 RGD:4888603 MI0000744 +HGNC:33636 MIR300 microRNA 300 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-300 MIRN300 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126297 ENSG00000215957 uc021sdc.2 NR_030582 RGD:2325424 MI0005525 +HGNC:31622 MIR301A microRNA 301a non-coding RNA RNA, micro Approved 17q22 17q22 "hsa-mir-301|hsa-mir-301a" "MIRN301|MIRN301A" microRNA 301 MicroRNAs 476 2004-04-23 2008-12-18 2008-01-07 2011-09-12 407027 ENSG00000207996 uc010wod.1 NR_029842 RGD:2325405 615675 MI0000745 +HGNC:33667 MIR301B microRNA 301b non-coding RNA RNA, micro Approved 22q11.21 22q11.21 hsa-mir-301b MIRN301B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126318 ENSG00000212102 uc021wmk.1 NR_030622 RGD:2325503 MI0005568 +HGNC:31623 MIR302A microRNA 302a non-coding RNA RNA, micro Approved 4q25 04q25 "hsa-mir-302|hsa-mir-302a" "MIRN302|MIRN302A" microRNA 302 MicroRNAs 476 2004-04-23 2008-12-18 2004-07-21 2011-09-12 407028 ENSG00000207927 uc062zcr.1 NR_029835 614596 MI0000738 +HGNC:31763 MIR302B microRNA 302b non-coding RNA RNA, micro Approved 4q25 04q25 hsa-mir-302b MIRN302B MicroRNAs 476 2004-07-22 2008-12-18 2016-10-10 442894 ENSG00000249532 uc062zct.1 NR_029857 614597 MI0000772 +HGNC:31764 MIR302C microRNA 302c non-coding RNA RNA, micro Approved 4q25 04q25 hsa-mir-302c MIRN302C MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442895 ENSG00000199102 uc062zcs.1 NR_029858 614598 MI0000773 +HGNC:31765 MIR302D microRNA 302d non-coding RNA RNA, micro Approved 4q25 04q25 hsa-mir-302d MIRN302D MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442896 ENSG00000199145 uc062zcq.1 NR_029859 614599 MI0000774 +HGNC:35348 MIR302E microRNA 302e non-coding RNA RNA, micro Approved 11p15.4 11p15.4 hsa-mir-302e MIRN302E MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313774 ENSG00000221703 uc031xes.1 NR_031683 MI0006417 +HGNC:35349 MIR302F microRNA 302f non-coding RNA RNA, micro Approved 18q12.1 18q12.1 hsa-mir-302f MIRN302F MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302131 ENSG00000283218 NR_031684 MI0006418 +HGNC:31632 MIR320A microRNA 320a non-coding RNA RNA, micro Approved 8p21.3 08p21.3 hsa-mir-320 "MIRN320|MIRN320A" microRNA 320 MicroRNAs 476 2004-04-23 2008-12-18 2008-10-27 2011-09-12 407037 ENSG00000208037 uc011kzd.1 NR_029714 RGD:2325539 614112 MI0000542 +HGNC:35247 MIR320B1 microRNA 320b-1 non-coding RNA RNA, micro Approved 1p13.1 01p13.1 hsa-mir-320b-1 MIRN320B1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302117 ENSG00000211543 uc021osk.1 NR_031564 MI0003776 +HGNC:35256 MIR320B2 microRNA 320b-2 non-coding RNA RNA, micro Approved 1q42.11 01q42.11 hsa-mir-320b-2 MIRN320B2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100313769 ENSG00000221406 uc021pjo.1 NR_031574 MI0003839 +HGNC:35248 MIR320C1 microRNA 320c-1 non-coding RNA RNA, micro Approved 18q11.2 18q11.2 hsa-mir-320c-1 MIRN320C1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302135 ENSG00000221493 uc021uia.1 NR_031565 MI0003778 +HGNC:35387 MIR320C2 microRNA 320c-2 non-coding RNA RNA, micro Approved 18q11.2 18q11.2 hsa-mir-320c-2 MIRN320C2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302195 ENSG00000212051 uc021uih.1 NR_031724 MI0008191 +HGNC:35386 MIR320D1 microRNA 320d-1 non-coding RNA RNA, micro Approved 13q14.11 13q14.11 hsa-mir-320d-1 MIRN320D1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100313896 ENSG00000211491 uc021rip.1 NR_031723 MI0008190 +HGNC:35388 MIR320D2 microRNA 320d-2 non-coding RNA RNA, micro Approved Xq27.1 Xq27.1 hsa-mir-320d-2 MIRN320D2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302169 ENSG00000221081 uc022cfg.1 NR_031725 MI0008192 +HGNC:38230 MIR320E microRNA 320e non-coding RNA RNA, micro Approved 19q13.32 19q13.32 hsa-mir-320e MicroRNAs 476 2010-04-30 2014-11-19 100422913 ENSG00000211513 uc021uwi.2 NR_036157 MI0014234 +HGNC:31766 MIR323A microRNA 323a non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-323 "MIRN323|MIR323" microRNA 323 MicroRNAs 476 2004-07-22 2011-11-14 2011-11-14 2014-11-19 442897 ENSG00000199069 uc001yjy.2 NR_029890 RGD:2325625 MI0000807 +HGNC:38349 MIR323B microRNA 323b non-coding RNA RNA, micro Approved 14q32.31 14q32.31 "hsa-mir-323b|hsa-mir-453" "MIR453|MIRN453" microRNA 453 MicroRNAs 476 2010-04-30 2014-11-19 574410 ENSG00000208004 uc021sdn.1 NR_029969 MI0014206 +HGNC:31767 MIR324 microRNA 324 non-coding RNA RNA, micro Approved 17p13.1 17p13.1 hsa-mir-324 MIRN324 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442898 ENSG00000199053 uc002gey.3 NR_029896 RGD:2325436 MI0000813 +HGNC:31768 MIR325 microRNA 325 non-coding RNA RNA, micro Approved Xq21.1 Xq21.1 hsa-mir-325 MIRN325 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-18 442899 ENSG00000207995 uc033ejm.1 NR_029905 MI0000824 +HGNC:50346 MIR325HG MIR325 host gene non-coding RNA RNA, long non-coding Approved Xq13.3-q21.1 Xq13.3-q21.1 MIR384HG MIR325 host gene (non-protein coding) 2014-04-15 2015-02-20 2015-02-20 101928469 ENSG00000280870 OTTHUMG00000189737 AK311342 NR_110400 +HGNC:31769 MIR326 microRNA 326 non-coding RNA RNA, micro Approved 11q13.4 11q13.4 hsa-mir-326 MIRN326 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442900 ENSG00000199090 uc010rrt.2 NR_029891 RGD:2325623 613755 MI0000808 +HGNC:31770 MIR328 microRNA 328 non-coding RNA RNA, micro Approved 16q22.1 16q22.1 hsa-mir-328 MIRN328 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442901 ENSG00000207948 uc010vjf.2 NR_029887 RGD:2325404 613701 MI0000804 +HGNC:32050 MIR329-1 microRNA 329-1 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-329-1 MIRN329-1 MicroRNAs 476 2005-07-11 2008-12-18 2014-11-19 574408 ENSG00000207761 uc021scq.2 NR_029967 MI0001725 +HGNC:32051 MIR329-2 microRNA 329-2 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-329-2 MIRN329-2 MicroRNAs 476 2005-07-11 2008-12-18 2014-11-19 574409 ENSG00000207762 uc021scr.1 NR_029968 MI0001726 +HGNC:31771 MIR330 microRNA 330 non-coding RNA RNA, micro Approved 19q13.32 19q13.32 hsa-mir-330 MIRN330 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442902 ENSG00000199066 uc002pcr.1 NR_029886 RGD:2325620 MI0000803 +HGNC:31772 MIR331 microRNA 331 non-coding RNA RNA, micro Approved 12q22 12q22 hsa-mir-331 MIRN331 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-18 442903 ENSG00000199172 uc001tea.2 NR_029895 RGD:2325619 MI0000812 +HGNC:31773 MIR335 microRNA 335 non-coding RNA RNA, micro Approved 7q32.2 07q32.2 hsa-mir-335 MIRN335 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442904 ENSG00000199043 uc011kpi.2 NR_029899 611768 MI0000816 +HGNC:31774 MIR337 microRNA 337 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-337 MIRN337 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-18 442905 ENSG00000199151 uc010txi.3 NR_029889 RGD:2325618 MI0000806 +HGNC:31775 MIR338 microRNA 338 non-coding RNA RNA, micro Approved 17q25.3 17q25.3 hsa-mir-338 MIRN338 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442906 ENSG00000283604 NR_029897 614059 MI0000814 +HGNC:31776 MIR339 microRNA 339 non-coding RNA RNA, micro Approved 7p22.3 07p22.3 hsa-mir-339 MIRN339 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442907 ENSG00000199023 uc011jvv.2 NR_029898 RGD:2325466 615977 MI0000815 +HGNC:31777 MIR340 microRNA 340 non-coding RNA RNA, micro Approved 5q35.3 05q35.3 hsa-mir-340 MIRN340 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442908 ENSG00000198995 uc003mln.4 NR_029885 MI0000802 +HGNC:31778 MIR342 microRNA 342 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-342 MIRN342 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442909 ENSG00000199082 uc021sbp.1 NR_029888 RGD:2325615 MI0000805 +HGNC:31779 MIR345 microRNA 345 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-345 MIRN345 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442910 ENSG00000198984 uc010twy.1 NR_029906 RGD:2325465 MI0000825 +HGNC:31780 MIR346 microRNA 346 non-coding RNA RNA, micro Approved 10q23.2 10q23.2 hsa-mir-346 MIRN346 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-18 442911 ENSG00000199104 uc010qmg.2 NR_029907 RGD:2325402 611190 MI0000826 +HGNC:31867 MIR361 microRNA 361 non-coding RNA RNA, micro Approved Xq21.2 Xq21.2 hsa-mir-361 MIRN361 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494323 ENSG00000199051 uc022bzp.2 NR_029848 RGD:2325532 MI0000760 +HGNC:32022 MIR362 microRNA 362 non-coding RNA RNA, micro Approved Xp11.23 Xp11.23 hsa-mir-362 MIRN362 MicroRNAs 476 2005-06-30 2008-12-18 2014-11-19 574030 ENSG00000208015 uc022bwh.2 NR_029850 MI0000762 +HGNC:32023 MIR363 microRNA 363 non-coding RNA RNA, micro Approved Xq26.2 Xq26.2 "hsa-mir-363|MIR-363" MIRN363 MicroRNAs 476 2005-06-30 2008-12-18 2016-10-10 574031 ENSG00000283638 uc022ceb.2 NR_029852 RGD:2325446 MI0000764 +HGNC:33692 MIR365A microRNA 365a non-coding RNA RNA, micro Approved 16p13.12 16p13.12 hsa-mir-365-1 "MIRN365-1|MIR365-1" microRNA 365-1 MicroRNAs 476 2007-10-25 2011-11-14 2011-11-14 2014-11-18 100126355 ENSG00000199130 uc021tdh.2 NR_029854 614735 MI0000767 +HGNC:33693 MIR365B microRNA 365b non-coding RNA RNA, micro Approved 17q11.2 17q11.2 hsa-mir-365-2 "MIRN365-2|MIR365-2" microRNA 365-2 MicroRNAs 476 2007-10-25 2011-11-14 2011-11-14 2016-10-10 100126356 ENSG00000228768 uc021tus.1 NR_029856 RGD:2325371 MI0000769 +HGNC:31781 MIR367 microRNA 367 non-coding RNA RNA, micro Approved 4q25 04q25 hsa-mir-367 MIRN367 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442912 ENSG00000199169 uc011cfz.3 NR_029860 614600 MI0000775 +HGNC:31783 MIR369 microRNA 369 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-369 MIRN369 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442914 ENSG00000199025 uc010txp.1 NR_029862 611794 MI0000777 +HGNC:31784 MIR370 microRNA 370 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-370 MIRN370 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442915 ENSG00000199005 uc021scg.3 NR_029863 RGD:2325369 612553 MI0000778 +HGNC:31785 MIR371A microRNA 371a non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-371 "MIRN371|MIR371" microRNA 371 MicroRNAs 476 2004-07-22 2011-11-14 2011-11-14 2014-11-19 442916 ENSG00000199031 uc010yec.3 NR_029864 RGD:2325374 612043 MI0000779 +HGNC:41863 MIR371B microRNA 371b non-coding RNA RNA, micro Approved 19 19 hsa-mir-371b MicroRNAs 476 2011-05-02 2014-11-18 100616185 ENSG00000269877 NR_039909 MI0017393 +HGNC:31786 MIR372 microRNA 372 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-372 MIRN372 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442917 ENSG00000199095 uc061clc.1 NR_029865 RGD:2325542 612044 MI0000780 +HGNC:31787 MIR373 microRNA 373 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-373 MIRN373 MicroRNAs 476 2004-07-22 2008-12-18 2014-11-19 442918 ENSG00000199143 uc010yee.1 NR_029866 611954 MI0000781 +HGNC:31788 MIR374A microRNA 374a non-coding RNA RNA, micro Approved Xq13.2 Xq13.2 "hsa-mir-374|hsa-mir-374a" "MIRN374|MIRN374A" microRNA 374 MicroRNAs 476 2004-07-22 2008-12-18 2007-10-23 2014-11-19 442919 ENSG00000199168 uc011mqm.3 NR_030785 MI0000782 +HGNC:33665 MIR374B microRNA 374b non-coding RNA RNA, micro Approved Xq13.2 Xq13.2 hsa-mir-374b MIRN374B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126317 ENSG00000212027 uc022bzc.2 NR_030620 RGD:2325517 MI0005566 +HGNC:38907 MIR374C microRNA 374c non-coding RNA RNA, micro Approved X X hsa-mir-374c MicroRNAs 476 2010-09-15 2014-11-19 100500807 ENSG00000283534 NR_037511 MI0016684 +HGNC:31868 MIR375 microRNA 375 non-coding RNA RNA, micro Approved 2q35 02q35 hsa-mir-375 MIRN375 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494324 ENSG00000198973 uc010fvz.2 NR_029867 RGD:2325360 611173 MI0000783 +HGNC:31869 MIR376A1 microRNA 376a-1 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 "hsa-mir-376a|hsa-mir-376a-1" "MIRN376A|MIRN376A1" microRNA 376a MicroRNAs 476 2005-01-04 2008-12-18 2006-02-23 2016-10-10 494325 ENSG00000283588 uc010awc.2 NR_029868 610959 MI0000784 +HGNC:32532 MIR376A2 microRNA 376a-2 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-376a-2 MIRN376A2 MicroRNAs 476 2006-02-23 2008-12-18 2011-09-12 664615 ENSG00000283561 NR_030266 610960 MI0003529 +HGNC:32066 MIR376B microRNA 376b non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-376b MIRN376B MicroRNAs 476 2005-07-13 2008-12-18 2011-09-12 574435 ENSG00000283556 uc021sdb.2 NR_030157 610961 MI0002466 +HGNC:31782 MIR376C microRNA 376c non-coding RNA RNA, micro Approved 14q32.31 14q32.31 "hsa-mir-368|hsa-mir-376c" "MIRN368|MIRN376C" microRNA 368 MicroRNAs 476 2004-07-22 2008-12-18 2007-10-23 2016-10-10 442913 ENSG00000283279 uc010txn.2 NR_029861 610983 MI0000776 +HGNC:31870 MIR377 microRNA 377 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-377 MIRN377 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494326 ENSG00000199015 uc010awh.2 NR_029869 RGD:2325344 MI0000785 +HGNC:31871 MIR378A microRNA 378a non-coding RNA RNA, micro Approved 5q32 05q32 hsa-mir-378 "MIRN378|MIR378" microRNA 378 MicroRNAs 476 2005-01-04 2011-11-14 2011-11-14 2014-11-19 494327 ENSG00000199047 uc021yfq.2 NR_029870 RGD:4888557 611957 MI0000786 +HGNC:38283 MIR378B microRNA 378b non-coding RNA RNA, micro Approved 3 03 hsa-mir-378b MicroRNAs 476 2010-04-30 2014-11-19 100422933 ENSG00000264534 NR_036084 MI0014154 +HGNC:38374 MIR378C microRNA 378c non-coding RNA RNA, micro Approved 10 10 hsa-mir-378c MicroRNAs 476 2010-04-30 2014-11-19 100422867 ENSG00000264803 uc021qaz.1 NR_036180 MI0015825 +HGNC:41550 MIR378D1 microRNA 378d-1 non-coding RNA RNA, micro Approved 4 04 hsa-mir-378d-1 MicroRNAs 476 2011-05-02 2014-11-19 100616201 ENSG00000263631 uc021xky.1 NR_039608 MI0016749 +HGNC:41797 MIR378D2 microRNA 378d-2 non-coding RNA RNA, micro Approved 8 08 hsa-mir-378d-2 MicroRNAs 476 2011-05-02 2014-11-19 100616169 ENSG00000264448 uc022ayf.1 NR_039602 MI0003840 +HGNC:41671 MIR378E microRNA 378e non-coding RNA RNA, micro Approved 5 05 hsa-mir-378e MicroRNAs 476 2011-05-02 2014-11-19 100616498 ENSG00000263831 uc021yhn.1 NR_039609 MI0016750 +HGNC:41686 MIR378F microRNA 378f non-coding RNA RNA, micro Approved 1p36.11 01p36.11 hsa-mir-378f MicroRNAs 476 2011-05-02 2014-11-19 100616492 ENSG00000264926 uc021oik.1 NR_039615 MI0016756 +HGNC:41785 MIR378G microRNA 378g non-coding RNA RNA, micro Approved 1 01 hsa-mir-378g MicroRNAs 476 2011-05-02 2014-11-18 100616321 ENSG00000263526 uc031uhq.1 NR_039620 MI0016761 +HGNC:41744 MIR378H microRNA 378h non-coding RNA RNA, micro Approved 5q33.2 05q33.2 hsa-mir-378h MicroRNAs 476 2011-05-02 2015-02-09 100616306 ENSG00000263361 uc032vpb.1 NR_039667 MI0016808 +HGNC:41620 MIR378I microRNA 378i non-coding RNA RNA, micro Approved 22 22 hsa-mir-378i MicroRNAs 476 2011-05-02 2014-11-19 100616259 uc032qqb.1 NR_039760 MI0016902 +HGNC:49979 MIR378J microRNA 378j non-coding RNA RNA, micro Approved 17 17 hsa-mir-378j MicroRNAs 476 2014-03-24 2014-11-19 102465136 ENSG00000274620 NR_106744 MI0021273 +HGNC:31872 MIR379 microRNA 379 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-379 MIRN379 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494328 ENSG00000199088 uc010awa.2 NR_029871 616358 MI0000787 +HGNC:31873 MIR380 microRNA 380 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-380 MIRN380 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494329 ENSG00000198982 NR_029872 613654 MI0000788 +HGNC:31874 MIR381 microRNA 381 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-381 MIRN381 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494330 ENSG00000199020 uc010awd.4 NR_029873 RGD:2325521 MI0000789 +HGNC:20136 MIR381HG MIR381 host gene non-coding RNA RNA, long non-coding Approved 14q32.31 14q32.31 NCRNA00225 non-protein coding RNA 225 C14orf89 "chromosome 14 open reading frame 89|MIR381 host gene (non-protein coding)" 2003-10-03 2010-01-22 2015-02-20 2015-02-20 378881 ENSG00000258861 OTTHUMG00000171633 uc032blx.1 AA861571 NR_104192 +HGNC:31875 MIR382 microRNA 382 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-382 MIRN382 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494331 ENSG00000283170 uc059fhn.1 NR_029874 MI0000790 +HGNC:31876 MIR383 microRNA 383 non-coding RNA RNA, micro Approved 8p22 08p22 hsa-mir-383 MIRN383 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494332 ENSG00000199127 uc010lst.1 NR_029875 RGD:2325533 MI0000791 +HGNC:31878 MIR384 microRNA 384 non-coding RNA RNA, micro Approved Xq21.1 Xq21.1 hsa-mir-384 MIRN384 MicroRNAs 476 2005-01-04 2008-12-18 2011-09-12 494333 ENSG00000283242 NR_029909 MI0001145 +HGNC:32055 MIR409 microRNA 409 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-409 MIRN409 MicroRNAs 476 2005-07-11 2008-12-18 2014-11-19 574413 ENSG00000199107 uc021sdr.2 NR_029975 RGD:2325366 614057 MI0001735 +HGNC:32065 MIR410 microRNA 410 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-410 MIRN410 MicroRNAs 476 2005-07-13 2008-12-18 2008-01-07 2014-11-19 574434 ENSG00000199092 uc021sdt.2 NR_030156 RGD:2325501 615036 MI0002465 +HGNC:32792 MIR411 microRNA 411 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-411 MIRN411 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693121 ENSG00000199109 uc021scm.2 NR_030389 MI0003675 +HGNC:32064 MIR412 microRNA 412 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-412 MIRN412 MicroRNAs 476 2005-07-13 2008-12-18 2014-11-18 574433 ENSG00000199012 uc021sds.1 NR_030155 RGD:2325529 MI0002464 +HGNC:32793 MIR421 microRNA 421 non-coding RNA RNA, micro Approved Xq13.2 Xq13.2 hsa-mir-421 MIRN421 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693122 ENSG00000202566 uc022bzb.2 NR_030398 MI0003685 +HGNC:31879 MIR422A microRNA 422a non-coding RNA RNA, micro Approved 15q22.31 15q22.31 hsa-mir-422a MIRN422A MicroRNAs 476 2005-01-04 2008-12-18 2014-11-18 494334 ENSG00000199156 uc021sov.1 NR_029944 MI0001444 +HGNC:31880 MIR423 microRNA 423 non-coding RNA RNA, micro Approved 17q11.2 17q11.2 hsa-mir-423 MIRN423 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494335 ENSG00000199071 uc002hew.1 NR_029945 RGD:2325359 MI0001445 +HGNC:31881 MIR424 microRNA 424 non-coding RNA RNA, micro Approved Xq26.3 Xq26.3 hsa-mir-424 MIRN424 MicroRNAs 476 2005-01-04 2008-12-18 2015-02-03 494336 ENSG00000274784 uc011mvo.2 NR_029946 RGD:2325467 300682 MI0001446 +HGNC:31882 MIR425 microRNA 425 non-coding RNA RNA, micro Approved 3p21.31 03p21.31 hsa-mir-425 MIRN425 MicroRNAs 476 2005-01-04 2008-12-18 2014-11-19 494337 ENSG00000199032 uc011bcb.1 NR_029948 RGD:2325499 MI0001448 +HGNC:13784 MIR429 microRNA 429 non-coding RNA RNA, micro Approved 1p36.33 01p36.33 hsa-mir-429 MIRN429 MicroRNAs 476 2005-05-24 2008-12-18 2014-11-19 554210 ENSG00000198976 uc010nyf.1 NR_029957 RGD:2325537 612094 MI0001641 +HGNC:32027 MIR431 microRNA 431 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-431 MIRN431 MicroRNAs 476 2005-06-30 2008-12-18 2014-11-19 574038 ENSG00000208001 uc021scc.1 NR_029965 RGD:2325450 611708 MI0001721 +HGNC:32083 MIR432 microRNA 432 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-432 MIRN432 MicroRNAs 476 2005-07-15 2008-12-18 2015-02-03 574451 ENSG00000272458 uc021sce.1 NR_030173 MI0003133 +HGNC:32026 MIR433 microRNA 433 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-433 MIRN433 MicroRNAs 476 2005-06-30 2008-12-18 2014-11-19 574034 ENSG00000207569 uc021scd.2 NR_029966 RGD:2325423 611711 MI0001723 +HGNC:26069 MIR448 microRNA 448 non-coding RNA RNA, micro Approved Xq23 Xq23 hsa-mir-448 MIRN448 MicroRNAs 476 2005-05-24 2008-12-18 2014-11-19 554212 ENSG00000199001 uc011mtd.2 NR_029955 RGD:2325372 300686 MI0001637 +HGNC:27645 MIR449A microRNA 449a non-coding RNA RNA, micro Approved 5q11.2 05q11.2 "hsa-mir-449|hsa-mir-449a" "MIRN449|MIRN449A" microRNA 449 MicroRNAs 476 2005-05-24 2008-12-18 2007-10-23 2014-11-19 554213 ENSG00000198983 uc011cqh.2 NR_029960 RGD:2325536 613131 MI0001648 +HGNC:32794 MIR449B microRNA 449b non-coding RNA RNA, micro Approved 5q11.2 05q11.2 hsa-mir-449b MIRN449B MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693123 ENSG00000207728 uc021xyn.1 NR_030387 613132 MI0003673 +HGNC:37302 MIR449C microRNA 449c non-coding RNA RNA, micro Approved 5 05 hsa-mir-449c MicroRNAs 476 2009-09-18 2014-11-19 100313923 ENSG00000251856 uc021xyo.1 NR_031572 RGD:4888547 MI0003823 +HGNC:28008 MIR450A1 microRNA 450a-1 non-coding RNA RNA, micro Approved Xq26.3 Xq26.3 "hsa-mir-450|hsa-mir-450-1|hsa-mir-450a-1" "MIRN450|MIRN450-1|MIRN450A1" "microRNA 450|microRNA 450-1" MicroRNAs 476 2005-05-24 2008-12-18 2007-10-23 2014-11-19 554214 ENSG00000199132 uc011mvl.2 NR_029962 RGD:2325535 MI0001652 +HGNC:32137 MIR450A2 microRNA 450a-2 non-coding RNA RNA, micro Approved Xq26.3 Xq26.3 "hsa-mir-450-2|hsa-mir-450a-2" "MIRN450-2|MIRN450A2" microRNA 450-2 MicroRNAs 476 2005-07-15 2008-12-18 2007-10-23 2014-11-18 574505 ENSG00000207755 uc022ceg.2 NR_030227 MI0003187 +HGNC:33642 MIR450B microRNA 450b non-coding RNA RNA, micro Approved Xq26.3 Xq26.3 hsa-mir-450b MIRN450B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126302 ENSG00000216001 uc022cef.2 NR_030587 MI0005531 +HGNC:32053 MIR451A microRNA 451a non-coding RNA RNA, micro Approved 17q11.2 17q11.2 hsa-mir-451 "MIRN451|MIR451" microRNA 451 MicroRNAs 476 2005-07-11 2011-11-14 2011-11-14 2015-01-29 574411 ENSG00000264066 uc021ttv.1 NR_029970 612071 MI0001729 +HGNC:41655 MIR451B microRNA 451b non-coding RNA RNA, micro Approved 17 17 hsa-mir-451b MicroRNAs 476 2011-05-02 2014-11-19 100616273 ENSG00000283364 NR_039876 RGD:2325534 MI0017360 +HGNC:32054 MIR452 microRNA 452 non-coding RNA RNA, micro Approved Xq28 Xq28 hsa-mir-452 MIRN452 MicroRNAs 476 2005-07-11 2008-12-18 2014-11-19 574412 ENSG00000207753 uc065bqy.1 NR_029973 MI0001733 +HGNC:33137 MIR454 microRNA 454 non-coding RNA RNA, micro Approved 17q22 17q22 hsa-mir-454 MIRN454 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-18 768216 ENSG00000211514 uc021uaq.1 NR_030411 MI0003820 +HGNC:32344 MIR455 microRNA 455 non-coding RNA RNA, micro Approved 9q32 09q32 hsa-mir-455 MIRN455 MicroRNAs 476 2005-10-14 2008-12-18 2014-11-19 619556 ENSG00000207726 uc011lxm.3 NR_030255 RGD:2325417 MI0003513 +HGNC:38359 MIR466 microRNA 466 non-coding RNA RNA, micro Approved 3 03 hsa-mir-466 MicroRNAs 476 2010-04-30 2015-02-09 100423038 ENSG00000265376 uc062htg.1 NR_130459 MI0014157 +HGNC:32340 MIR483 microRNA 483 non-coding RNA RNA, micro Approved 11p15.5 11p15.5 hsa-mir-483 MIRN483 MicroRNAs 476 2005-10-14 2008-12-18 2014-11-19 619552 ENSG00000207805 uc021qcc.2 NR_030158 MI0002467 +HGNC:32341 MIR484 microRNA 484 non-coding RNA RNA, micro Approved 16p13.11 16p13.11 hsa-mir-484 MIRN484 MicroRNAs 476 2005-10-14 2008-12-18 2015-02-03 619553 ENSG00000272213 uc021tdp.2 NR_030159 RGD:2325341 MI0002468 +HGNC:32067 MIR485 microRNA 485 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-485 MIRN485 MicroRNAs 476 2005-07-13 2008-12-18 2014-11-19 574436 ENSG00000208027 uc021sdm.2 NR_030160 615385 MI0002469 +HGNC:32342 MIR486-1 microRNA 486-1 non-coding RNA RNA, micro Approved 8p11.21 08p11.21 hsa-mir-486 "MIRN486|MIR486" microRNA 486 MicroRNAs 476 2005-10-14 2014-06-26 2014-06-26 2014-11-19 619554 ENSG00000274705 NR_030161 MI0002470 +HGNC:50213 MIR486-2 microRNA 486-2 non-coding RNA RNA, micro Approved 8 08 hsa-mir-486-2 MicroRNAs 476 2014-03-24 2014-11-19 102465696 ENSG00000283450 NR_106984 MI0023622 +HGNC:32343 MIR487A microRNA 487a non-coding RNA RNA, micro Approved 14q32.31 14q32.31 "hsa-mir-487|hsa-mir-487a" "MIRN487|MIRN487A" microRNA 487 MicroRNAs 476 2005-10-14 2008-12-18 2006-02-23 2016-10-10 619555 ENSG00000207742 uc021sdk.2 NR_030162 MI0002471 +HGNC:32533 MIR487B microRNA 487b non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-487b MIRN487B MicroRNAs 476 2006-02-23 2008-12-18 2014-11-19 664616 ENSG00000207754 uc021sdf.2 NR_030267 RGD:2325343 615037 MI0003530 +HGNC:32073 MIR488 microRNA 488 non-coding RNA RNA, micro Approved 1q25.2 01q25.2 hsa-mir-488 MIRN488 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574441 ENSG00000202609 uc021pfc.2 NR_030163 RGD:2325487 MI0003123 +HGNC:32074 MIR489 microRNA 489 non-coding RNA RNA, micro Approved 7q21.3 07q21.3 hsa-mir-489 MIRN489 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574442 ENSG00000207656 uc022ahk.1 NR_030164 RGD:2314886 614523 MI0003124 +HGNC:32075 MIR490 microRNA 490 non-coding RNA RNA, micro Approved 7q33 07q33 "hsa-mir-490|miR-490" MIRN490 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574443 ENSG00000207597 uc022amd.1 NR_030165 RGD:2325414 616972 MI0003125 +HGNC:32076 MIR491 microRNA 491 non-coding RNA RNA, micro Approved 9p21.3 09p21.3 hsa-mir-491 MIRN491 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574444 ENSG00000207609 uc022beb.2 NR_030166 MI0003126 +HGNC:32081 MIR492 microRNA 492 non-coding RNA RNA, micro Approved 12q22 12q22 hsa-mir-492 MIRN492 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574449 ENSG00000208038 uc001tdk.3 NR_030171 614384 MI0003131 +HGNC:32082 MIR493 microRNA 493 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-493 MIRN493 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574450 ENSG00000207989 uc021sca.2 NR_030172 MI0003132 +HGNC:32084 MIR494 microRNA 494 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-494 MIRN494 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574452 ENSG00000194717 uc010txm.3 NR_030174 RGD:2325523 616036 MI0003134 +HGNC:32085 MIR495 microRNA 495 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-495 MIRN495 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574453 ENSG00000207743 uc021scu.2 NR_030175 615149 MI0003135 +HGNC:32086 MIR496 microRNA 496 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-496 MIRN496 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574454 ENSG00000207961 uc021sdp.2 NR_030176 RGD:2325410 MI0003136 +HGNC:32088 MIR497 microRNA 497 non-coding RNA RNA, micro Approved 17p13.1 17p13.1 hsa-mir-497 MIRN497 MicroRNAs 476 2005-07-15 2008-12-18 2015-02-03 574456 ENSG00000273895 uc060ahi.1 NR_030178 RGD:2325364 615672 MI0003138 +HGNC:39523 MIR497HG mir-497-195 cluster host gene non-coding RNA RNA, long non-coding Approved 17p13.1 17p13.1 MIR195HG mir-497-195 cluster host gene (non-protein coding) 2011-02-14 2015-02-20 2015-02-20 100506755 ENSG00000267532 OTTHUMG00000180219 uc010vtj.3 NR_038310 MIR497HG +HGNC:32092 MIR498 microRNA 498 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-498 MIRN498 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574460 ENSG00000207869 uc021uzm.1 NR_030182 MI0003142 +HGNC:32133 MIR499A microRNA 499a non-coding RNA RNA, micro Approved 20q11.22 20q11.22 hsa-mir-499 "MIRN499|MIR499" microRNA 499 MicroRNAs 476 2005-07-15 2011-11-14 2011-11-14 2014-11-19 574501 ENSG00000207635 uc021wcg.1 NR_030223 RGD:2325514 613614 MI0003183 +HGNC:41640 MIR499B microRNA 499b non-coding RNA RNA, micro Approved 20 20 hsa-mir-499a MIR499A microRNA 499a MicroRNAs 476 2011-05-02 2011-11-14 2011-11-14 2014-11-19 100616134 ENSG00000283441 NR_039912 MI0017396 +HGNC:32134 MIR500A microRNA 500a non-coding RNA RNA, micro Approved Xp11.23 Xp11.23 hsa-mir-500 "MIRN500|MIR500" microRNA 500 MicroRNAs 476 2005-07-15 2010-09-13 2010-09-13 2014-11-19 574502 ENSG00000207785 uc022bwg.1 NR_030224 MI0003184 +HGNC:38223 MIR500B microRNA 500b non-coding RNA RNA, micro Approved Xp11.23 Xp11.23 hsa-mir-500b MicroRNAs 476 2010-04-30 2014-11-19 100422911 ENSG00000239057 uc022bwj.2 NR_036257 MI0015903 +HGNC:32135 MIR501 microRNA 501 non-coding RNA RNA, micro Approved Xp11.23 Xp11.23 hsa-mir-501 MIRN501 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574503 ENSG00000211538 uc022bwi.1 NR_030225 MI0003185 +HGNC:32136 MIR502 microRNA 502 non-coding RNA RNA, micro Approved Xp11.23 Xp11.23 hsa-mir-502 MIRN502 MicroRNAs 476 2005-07-15 2008-12-18 2015-02-03 574504 ENSG00000272080 uc022bwl.1 NR_030226 RGD:2325495 300893 MI0003186 +HGNC:32138 MIR503 microRNA 503 non-coding RNA RNA, micro Approved Xq26.3 Xq26.3 hsa-mir-503 MIRN503 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574506 ENSG00000208005 uc011mvn.2 NR_030228 22072795 RGD:2325516 300865 MI0003188 +HGNC:28258 MIR503HG MIR503 host gene non-coding RNA RNA, long non-coding Approved Xq26.3 Xq26.3 "MGC16121|H19X" H19 X-linked co-expressed lncRNA MIR503 host gene (non-protein coding) Long non-coding RNAs 788 2013-05-17 2015-02-20 2015-02-20 84848 ENSG00000223749 OTTHUMG00000022455 NR_024607 24463510 +HGNC:32139 MIR504 microRNA 504 non-coding RNA RNA, micro Approved Xq26.3 Xq26.3 hsa-mir-504 MIRN504 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574507 ENSG00000207800 uc022cfa.2 NR_030229 MI0003189 +HGNC:32140 MIR505 microRNA 505 non-coding RNA RNA, micro Approved Xq27.1 Xq27.1 hsa-mir-505 MIRN505 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574508 ENSG00000207633 uc022cfe.2 NR_030230 MI0003190 +HGNC:32143 MIR506 microRNA 506 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-506 MIRN506 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574511 ENSG00000207731 uc022cfu.1 NR_030233 300877 MI0003193 +HGNC:32144 MIR507 microRNA 507 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-507 MIRN507 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574512 ENSG00000207969 uc022cfv.1 NR_030234 MI0003194 +HGNC:32145 MIR508 microRNA 508 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-508 MIRN508 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574513 ENSG00000207589 uc022cfw.1 NR_030235 300874 MI0003195 +HGNC:32146 MIR509-1 microRNA 509-1 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 "hsa-mir-509|hsa-mir-509-1" "MIRN509|MIRN509-1" microRNA 509 MicroRNAs 476 2005-07-15 2008-12-18 2007-10-23 2014-11-19 574514 ENSG00000208000 uc022cfz.1 NR_030236 300875 MI0003196 +HGNC:33641 MIR509-2 microRNA 509-2 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-509-2 MIRN509-2 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126301 ENSG00000212013 uc065bld.1 NR_030586 MI0005530 +HGNC:33675 MIR509-3 microRNA 509-3 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-509-3 MIRN509-3 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126337 ENSG00000212014 uc065ble.1 NR_030629 300876 MI0005717 +HGNC:32147 MIR510 microRNA 510 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-510 MIRN510 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574515 ENSG00000207641 uc022cga.1 NR_030237 300866 MI0003197 +HGNC:32077 MIR511 microRNA 511 non-coding RNA RNA, micro Approved 10p12.33 10p12.33 "hsa-mir-511-1|hsa-mir-511-2" "MIRN511-1|MIR511-2|MIRN511-2|MIR511-1" "microRNA 511-2|microRNA 511-1" MicroRNAs 476 2005-07-15 2014-03-17 2014-03-17 2015-02-03 574445 ENSG00000207938 NR_030168 MI0003127 +HGNC:32090 MIR512-1 microRNA 512-1 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-512-1 MIRN512-1 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574458 ENSG00000207645 uc021uzj.1 NR_030180 MI0003140 +HGNC:32091 MIR512-2 microRNA 512-2 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-512-2 MIRN512-2 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574459 ENSG00000207644 uc021uzk.1 NR_030181 MI0003141 +HGNC:32141 MIR513A1 microRNA 513a-1 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 "hsa-mir-513-1|hsa-mir-513a-1" "MIRN513-1|MIRN513A1" microRNA 513-1 MicroRNAs 476 2005-07-15 2008-12-18 2008-01-07 2014-11-18 574509 ENSG00000207873 uc033eyr.1 NR_030231 MI0003191 +HGNC:32142 MIR513A2 microRNA 513a-2 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-513-2 "MIRN513-2|MIRN513A-2|MIRN513A2" microRNA 513-2 MicroRNAs 476 2005-07-15 2008-12-18 2008-01-07 2014-11-19 574510 ENSG00000207984 uc033eys.1 NR_030232 MI0003192 +HGNC:33935 MIR513B microRNA 513b non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-513b MIRN513B MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100313822 ENSG00000207871 uc033eyq.1 NR_031708 MI0006648 +HGNC:33934 MIR513C microRNA 513c non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-513c MIRN513C MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100302114 ENSG00000216171 uc033eyp.1 NR_031709 RGD:4888578 MI0006649 +HGNC:32148 MIR514A1 microRNA 514a-1 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-514-1 "MIRN514-1|MIR514-1" microRNA 514-1 MicroRNAs 476 2005-07-15 2011-11-14 2011-11-14 2014-11-19 574516 ENSG00000207868 uc022cgb.1 NR_030238 MI0003198 +HGNC:32149 MIR514A2 microRNA 514a-2 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-514-2 "MIRN514-2|MIR514-2" microRNA 514-2 MicroRNAs 476 2005-07-15 2011-11-14 2011-11-14 2014-11-19 574517 ENSG00000207866 uc011mww.2 NR_030239 MI0003199 +HGNC:32150 MIR514A3 microRNA 514a-3 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-514-3 "MIRN514-3|MIR514-3" microRNA 514-3 MicroRNAs 476 2005-07-15 2011-11-14 2011-11-14 2014-11-19 574518 ENSG00000207867 uc011mwx.2 NR_030240 MI0003200 +HGNC:38292 MIR514B microRNA 514b non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-514b MicroRNAs 476 2010-04-30 2014-11-19 100422847 ENSG00000252583 uc022cfx.1 NR_036173 RGD:7489026 MI0014251 +HGNC:32094 MIR515-1 microRNA 515-1 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-515-1 MIRN515-1 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574462 ENSG00000207616 uc010ydz.2 NR_030184 MI0003144 +HGNC:32097 MIR515-2 microRNA 515-2 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-515-2 MIRN515-2 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574465 ENSG00000207615 uc010yea.3 NR_030187 MI0003147 +HGNC:32130 MIR516A1 microRNA 516a-1 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 "hsa-mir-516-1|hsa-mir-516a-1" "MIRN516-1|MIRN516A1" microRNA 516-1 MicroRNAs 476 2005-07-15 2008-12-18 2007-10-23 2014-11-19 574498 ENSG00000207767 uc021vaw.2 NR_030220 MI0003180 +HGNC:32131 MIR516A2 microRNA 516a-2 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 "hsa-mir-516-2|hsa-mir-516a-2" "MIRN516-2|MIRN516A2" microRNA 516-2 MicroRNAs 476 2005-07-15 2008-12-18 2007-10-23 2014-11-19 574499 ENSG00000207620 uc021vay.1 NR_030221 MI0003181 +HGNC:32122 MIR516B1 microRNA 516b-1 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 "hsa-mir-516-4|hsa-mir-516b-1" "MIRN516-4|MIRN516B1" microRNA 516-4 MicroRNAs 476 2005-07-15 2008-12-18 2007-10-23 2014-11-19 574490 ENSG00000207946 uc021vap.2 NR_030212 MI0003172 +HGNC:32117 MIR516B2 microRNA 516b-2 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 "hsa-mir-516-3|hsa-mir-516b-2" "MIRN516-3|MIRN516B2" microRNA 516-3 MicroRNAs 476 2005-07-15 2008-12-18 2007-10-23 2014-11-19 574485 ENSG00000207925 uc021vak.1 NR_030207 MI0003167 +HGNC:32111 MIR517A microRNA 517a non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-517a MIRN517A MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574479 ENSG00000207734 uc021vae.1 NR_030201 MI0003161 +HGNC:32115 MIR517B microRNA 517b non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-517b MIRN517B MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574483 ENSG00000207837 uc021vai.1 NR_030205 MI0003165 +HGNC:32124 MIR517C microRNA 517c non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-517c MIRN517C MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574492 ENSG00000207838 uc021var.1 NR_030214 MI0003174 +HGNC:32120 MIR518A1 microRNA 518a-1 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-518a-1 "MIRN518A-1|MIRN518A1" MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574488 ENSG00000207803 uc021van.1 NR_030210 MI0003170 +HGNC:32123 MIR518A2 microRNA 518a-2 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-518a-2 "MIRN518A-2|MIRN518A2" MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574491 ENSG00000207699 uc021vaq.1 NR_030213 MI0003173 +HGNC:32106 MIR518B microRNA 518b non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-518b MIRN518B MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574474 ENSG00000207862 uc021uzz.1 NR_030196 MI0003156 +HGNC:32109 MIR518C microRNA 518c non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-518c MIRN518C MicroRNAs 476 2005-07-15 2008-12-18 2016-10-10 574477 ENSG00000283490 uc021vac.2 NR_030199 MI0003159 +HGNC:32121 MIR518D microRNA 518d non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-518d MIRN518D MicroRNAs 476 2005-07-15 2008-12-18 2016-10-10 574489 ENSG00000283330 NR_030211 MI0003171 +HGNC:32119 MIR518E microRNA 518e non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-518e MIRN518E MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574487 ENSG00000207987 uc021vam.1 NR_030209 MI0003169 +HGNC:32104 MIR518F microRNA 518f non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-518f MIRN518F MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574472 ENSG00000207706 uc021uzx.1 NR_030194 MI0003154 +HGNC:32128 MIR519A1 microRNA 519a-1 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-519a-1 "MIRN519A-1|MIRN519A1" MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574496 ENSG00000207992 uc021vau.1 NR_030218 MI0003178 +HGNC:32132 MIR519A2 microRNA 519a-2 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-519a-2 "MIRN519A-2|MIRN519A2" MicroRNAs 476 2005-07-15 2008-12-18 2016-10-10 574500 ENSG00000269842 NR_030222 MI0003182 +HGNC:32101 MIR519B microRNA 519b non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-519b MIRN519B MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574469 ENSG00000207825 uc021uzu.1 NR_030191 MI0003151 +HGNC:32098 MIR519C microRNA 519c non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-519c MIRN519C MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574466 ENSG00000207788 uc021uzq.1 NR_030188 MI0003148 +HGNC:32112 MIR519D microRNA 519d non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-519d MIRN519D MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574480 ENSG00000207981 uc021vaf.1 NR_030202 614247 MI0003162 +HGNC:32095 MIR519E microRNA 519e non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-519e MIRN519E MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574463 ENSG00000207810 uc021uzo.1 NR_030185 MI0003145 +HGNC:32099 MIR520A microRNA 520a non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-520a MIRN520A MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574467 ENSG00000207594 uc021uzs.1 NR_030189 MI0003149 +HGNC:32105 MIR520B microRNA 520b non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-520b MIRN520B MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574473 ENSG00000207722 uc021uzy.1 NR_030195 MI0003155 +HGNC:32108 MIR520C microRNA 520c non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-520c MIRN520C MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574476 ENSG00000207738 uc021vab.1 NR_030198 615908 MI0003158 +HGNC:32114 MIR520D microRNA 520d non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-520d MIRN520D MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574482 ENSG00000207735 uc021vah.1 NR_030204 MI0003164 +HGNC:32093 MIR520E microRNA 520e non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-520e MIRN520E MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574461 ENSG00000207599 uc021uzn.1 NR_030183 MI0003143 +HGNC:32096 MIR520F microRNA 520f non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-520f MIRN520F MicroRNAs 476 2005-07-15 2008-12-18 2016-10-10 574464 ENSG00000283540 uc021uzp.2 NR_030186 MI0003146 +HGNC:32116 MIR520G microRNA 520g non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-520g MIRN520G MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574484 ENSG00000207799 uc021vaj.1 NR_030206 616272 MI0003166 +HGNC:32125 MIR520H microRNA 520h non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-520h MIRN520H MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574493 ENSG00000207861 uc010yeb.2 NR_030215 614755 MI0003175 +HGNC:32126 MIR521-1 microRNA 521-1 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-521-1 MIRN521-1 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574494 ENSG00000207634 uc021vas.1 NR_030216 MI0003176 +HGNC:32113 MIR521-2 microRNA 521-2 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-521-2 MIRN521-2 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574481 ENSG00000207549 uc021vag.1 NR_030203 MI0003163 +HGNC:32127 MIR522 microRNA 522 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-522 MIRN522 MicroRNAs 476 2005-07-15 2008-12-18 2015-01-29 574495 ENSG00000283685 uc021vat.2 NR_030217 MI0003177 +HGNC:32103 MIR523 microRNA 523 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-523 MIRN523 MicroRNAs 476 2005-07-15 2008-12-18 2016-10-10 574471 ENSG00000283455 NR_030193 MI0003153 +HGNC:32110 MIR524 microRNA 524 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-524 MIRN524 MicroRNAs 476 2005-07-15 2008-12-18 2016-10-10 574478 ENSG00000283289 uc021vad.2 NR_030200 MI0003160 +HGNC:32102 MIR525 microRNA 525 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-525 MIRN525 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574470 ENSG00000207711 uc021uzv.1 NR_030192 MI0003152 +HGNC:32107 MIR526A1 microRNA 526a-1 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-526a-1 "MIRN526A-1|MIRN526A1" MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574475 ENSG00000207629 uc021vaa.1 NR_030197 MI0003157 +HGNC:32118 MIR526A2 microRNA 526a-2 non-coding RNA RNA, micro Approved 19 19 hsa-mir-526a-2 "MIRN526A-2|MIRN526A2" MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574486 ENSG00000211532 uc021val.1 NR_030208 MI0003168 +HGNC:32100 MIR526B microRNA 526b non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-526b MIRN526B MicroRNAs 476 2005-07-15 2008-12-18 2014-11-19 574468 ENSG00000207580 uc021uzt.1 NR_030190 MI0003150 +HGNC:32129 MIR527 microRNA 527 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-527 MIRN527 MicroRNAs 476 2005-07-15 2008-12-18 2014-11-18 574497 ENSG00000207979 uc021vav.1 NR_030219 MI0003179 +HGNC:32795 MIR532 microRNA 532 non-coding RNA RNA, micro Approved Xp11.23 Xp11.23 hsa-mir-532 MIRN532 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693124 ENSG00000207758 uc033edn.1 NR_030241 RGD:2325358 MI0003205 +HGNC:32529 MIR539 microRNA 539 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-539 MIRN539 MicroRNAs 476 2006-02-23 2008-12-18 2014-11-19 664612 ENSG00000202560 uc021sdg.2 NR_030256 MI0003514 +HGNC:33650 MIR541 microRNA 541 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-541 MIRN541 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126308 ENSG00000216179 uc021sdq.1 NR_030594 RGD:2325525 MI0005539 +HGNC:32534 MIR542 microRNA 542 non-coding RNA RNA, micro Approved Xq26.3 Xq26.3 hsa-mir-542 MIRN542 MicroRNAs 476 2006-02-23 2008-12-18 2014-11-19 664617 ENSG00000207784 uc022ceh.2 NR_030399 RGD:2325422 MI0003686 +HGNC:33664 MIR543 microRNA 543 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-543 MIRN543 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126335 ENSG00000212040 uc021sct.2 NR_030619 MI0005565 +HGNC:32530 MIR544A microRNA 544a non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-544 "MIRN544|MIR544" microRNA 544 MicroRNAs 476 2006-02-23 2011-11-14 2011-11-14 2014-11-19 664613 ENSG00000207587 uc021sdi.1 NR_030257 RGD:2325481 MI0003515 +HGNC:38361 MIR544B microRNA 544b non-coding RNA RNA, micro Approved 3 03 hsa-mir-544b MicroRNAs 476 2010-04-30 2014-11-19 100422864 ENSG00000265981 uc032sae.1 NR_036088 MI0014159 +HGNC:32531 MIR545 microRNA 545 non-coding RNA RNA, micro Approved Xq13.2 Xq13.2 hsa-mir-545 MIRN545 MicroRNAs 476 2006-02-23 2008-12-18 2014-11-18 664614 ENSG00000207820 uc022bze.1 NR_030258 MI0003516 +HGNC:32796 MIR548A1 microRNA 548a-1 non-coding RNA RNA, micro Approved 6p22.3 06p22.3 hsa-mir-548a-1 MIRN548A1 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693125 ENSG00000207775 uc021yme.1 NR_030312 MI0003593 +HGNC:32797 MIR548A2 microRNA 548a-2 non-coding RNA RNA, micro Approved 6q23.3 06q23.3 hsa-mir-548a-2 MIRN548A2 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693126 ENSG00000207689 uc032xmp.1 NR_030317 MI0003598 +HGNC:32798 MIR548A3 microRNA 548a-3 non-coding RNA RNA, micro Approved 8q22.3 08q22.3 hsa-mir-548a-3 MIRN548A3 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693127 ENSG00000208032 uc033bvm.1 NR_030330 MI0003612 +HGNC:38944 MIR548AA1 microRNA 548aa-1 non-coding RNA RNA, micro Approved 8 08 hsa-mir-548aa-1 MicroRNAs 476 2010-09-15 2014-11-19 100500863 ENSG00000207704 uc033bxv.1 NR_037516 MI0016689 +HGNC:38921 MIR548AA2 microRNA 548aa-2 non-coding RNA RNA, micro Approved 17 17 hsa-mir-548aa-2 MicroRNAs 476 2010-09-15 2014-11-19 100500895 ENSG00000263690 uc032fpl.1 NR_037517 MI0016690 +HGNC:41825 MIR548AB microRNA 548ab non-coding RNA RNA, micro Approved 3 03 hsa-mir-548ab MicroRNAs 476 2011-05-02 2014-11-19 100616336 ENSG00000265328 uc032rvy.1 NR_039611 MI0016752 +HGNC:41626 MIR548AC microRNA 548ac non-coding RNA RNA, micro Approved 1 01 hsa-mir-548ac MicroRNAs 476 2011-05-02 2014-11-19 100616384 ENSG00000264419 uc031umz.1 NR_039621 MI0016762 +HGNC:41683 MIR548AD microRNA 548ad non-coding RNA RNA, micro Approved 2 02 hsa-mir-548ad MicroRNAs 476 2011-05-02 2014-11-19 100616475 ENSG00000265301 uc032njn.1 NR_039629 MI0016770 +HGNC:41742 MIR548AE1 microRNA 548ae-1 non-coding RNA RNA, micro Approved 2 02 hsa-mir-548ae-1 MicroRNAs 476 2011-05-02 2014-11-18 100616305 ENSG00000266808 uc032omi.1 NR_039638 MI0016779 +HGNC:41831 MIR548AE2 microRNA 548ae-2 non-coding RNA RNA, micro Approved 5 05 hsa-mir-548ae-2 MicroRNAs 476 2011-05-02 2014-11-19 100616339 ENSG00000265699 uc032uvb.1 NR_039639 MI0016780 +HGNC:41625 MIR548AG1 microRNA 548ag-1 non-coding RNA RNA, micro Approved 4 04 hsa-mir-548ag-1 MicroRNAs 476 2011-05-02 2014-11-19 100616450 ENSG00000265829 uc032tko.1 NR_039652 MI0016793 +HGNC:41745 MIR548AG2 microRNA 548ag-2 non-coding RNA RNA, micro Approved 20 20 hsa-mir-548ag-2 MicroRNAs 476 2011-05-02 2014-11-18 100616440 ENSG00000265617 uc032poh.1 NR_039653 MI0016794 +HGNC:41605 MIR548AH microRNA 548ah non-coding RNA RNA, micro Approved 4 04 hsa-mir-548ah MicroRNAs 476 2011-05-02 2014-11-19 100616254 ENSG00000283682 NR_039655 MI0016796 +HGNC:41854 MIR548AI microRNA 548ai non-coding RNA RNA, micro Approved 6 06 hsa-mir-548ai MicroRNAs 476 2011-05-02 2014-11-19 100616347 ENSG00000265226 uc032xfm.1 NR_039672 MI0016813 +HGNC:41884 MIR548AJ1 microRNA 548aj-1 non-coding RNA RNA, micro Approved 6 06 hsa-mir-548aj-1 MicroRNAs 476 2011-05-02 2014-11-19 100616191 ENSG00000265669 uc032xmc.1 NR_039673 MI0016814 +HGNC:41600 MIR548AJ2 microRNA 548aj-2 non-coding RNA RNA, micro Approved X X hsa-mir-548aj-2 MicroRNAs 476 2011-05-02 2014-11-19 100616252 ENSG00000221466 uc033dzg.1 NR_039674 MI0016815 +HGNC:41893 MIR548AK microRNA 548ak non-coding RNA RNA, micro Approved 10 10 hsa-mir-548ak MicroRNAs 476 2011-05-02 2014-11-19 100616488 ENSG00000265653 uc031vxh.1 NR_039699 MI0016840 +HGNC:41736 MIR548AL microRNA 548al non-coding RNA RNA, micro Approved 11 11 hsa-mir-548al MicroRNAs 476 2011-05-02 2014-11-19 100616215 ENSG00000264402 uc031xvk.1 NR_039710 MI0016851 +HGNC:41637 MIR548AM microRNA 548am non-coding RNA RNA, micro Approved X X hsa-mir-548am MicroRNAs 476 2011-05-02 2014-11-19 100616428 ENSG00000265144 uc033drr.1 NR_039762 MI0016904 +HGNC:41681 MIR548AN microRNA 548an non-coding RNA RNA, micro Approved X X hsa-mir-548an MicroRNAs 476 2011-05-02 2014-11-19 100616144 ENSG00000263515 uc022ccb.2 NR_039765 MI0016907 +HGNC:43539 MIR548AO microRNA 548ao non-coding RNA RNA, micro Approved 8 08 hsa-mir-548ao 2011-11-14 2011-11-14 100847068 ENSG00000263372 uc033bjc.1 NR_049801 MI0017871 +HGNC:43465 MIR548AP microRNA 548ap non-coding RNA RNA, micro Approved 15 15 hsa-mir-548ap 2011-11-14 2011-11-14 100847084 ENSG00000264406 uc032coa.1 NR_049805 MI0017875 +HGNC:43488 MIR548AQ microRNA 548aq non-coding RNA RNA, micro Approved 3 03 hsa-mir-548aq 2011-11-14 2011-11-14 100847078 ENSG00000265470 uc032smp.1 NR_049838 MI0019130 +HGNC:43455 MIR548AR microRNA 548ar non-coding RNA RNA, micro Approved 13 13 hsa-mir-548ar 2011-11-14 2011-11-14 100847035 ENSG00000264539 uc032apz.1 NR_049839 MI0019131 +HGNC:43550 MIR548AS microRNA 548as non-coding RNA RNA, micro Approved 13 13 hsa-mir-548as 2011-11-14 2011-11-14 100847092 ENSG00000263741 uc032amc.1 NR_049840 MI0019132 +HGNC:43517 MIR548AT microRNA 548at non-coding RNA RNA, micro Approved 17 17 hsa-mir-548at 2011-11-14 2011-11-14 100847030 ENSG00000264314 uc032fir.1 NR_049845 MI0019137 +HGNC:43483 MIR548AU microRNA 548au non-coding RNA RNA, micro Approved 9 09 hsa-mir-548au 2011-11-14 2011-11-14 100847045 ENSG00000283146 NR_049853 MI0019145 +HGNC:43537 MIR548AV microRNA 548av non-coding RNA RNA, micro Approved 18q22.3 18q22.3 hsa-mir-548av 2011-11-14 2015-07-22 100847083 ENSG00000263750 uc032hhi.1 NR_049858 MI0019152 +HGNC:43454 MIR548AW microRNA 548aw non-coding RNA RNA, micro Approved 9 09 hsa-mir-548aw 2011-11-14 2011-11-14 100846992 ENSG00000263816 uc033djr.1 NR_049862 MI0019283 +HGNC:43528 MIR548AX microRNA 548ax non-coding RNA RNA, micro Approved X X hsa-mir-548ax 2011-11-14 2011-11-14 100847063 ENSG00000263652 uc033dqq.1 NR_049865 MI0019286 +HGNC:49943 MIR548AY microRNA 548ay non-coding RNA RNA, micro Approved 3p22.3 03p22.3 hsa-mir-548ay MicroRNAs 476 2014-03-24 2015-07-22 102465247 ENSG00000276147 NR_106753 MI0022210 +HGNC:49981 MIR548AZ microRNA 548az non-coding RNA RNA, micro Approved 8 08 hsa-mir-548az MicroRNAs 476 2014-03-24 2014-11-19 102466162 ENSG00000276479 NR_106755 MI0022212 +HGNC:32799 MIR548B microRNA 548b non-coding RNA RNA, micro Approved 6q22.31 06q22.31 hsa-mir-548b MIRN548B MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693128 ENSG00000207982 uc021zei.1 NR_030315 MI0003596 +HGNC:50260 MIR548BA microRNA 548ba non-coding RNA RNA, micro Approved 2 02 hsa-mir-548ba MicroRNAs 476 2014-03-24 2014-11-19 102465854 ENSG00000212036 NR_107011 MI0025747 +HGNC:50834 MIR548BB microRNA 548bb non-coding RNA RNA, micro Approved 3 03 MI0029321 MicroRNAs 476 2014-06-26 2014-06-26 103504735 ENSG00000281426 NR_128708 MI0029321 +HGNC:32800 MIR548C microRNA 548c non-coding RNA RNA, micro Approved 12q14.2 12q14.2 hsa-mir-548c MIRN548C MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693129 ENSG00000207546 uc021qzw.1 NR_030347 MI0003630 +HGNC:32801 MIR548D1 microRNA 548d-1 non-coding RNA RNA, micro Approved 8q24.13 08q24.13 hsa-mir-548d-1 MIRN548D1 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693130 ENSG00000207704 NR_030382 MI0003668 +HGNC:32802 MIR548D2 microRNA 548d-2 non-coding RNA RNA, micro Approved 17q24.2 17q24.2 hsa-mir-548d-2 MIRN548D2 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693131 ENSG00000263690 NR_030385 MI0003671 +HGNC:35275 MIR548E microRNA 548e non-coding RNA RNA, micro Approved 10q25.2 10q25.2 hsa-mir-548e MIRN548E MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100313921 ENSG00000221214 uc031wtf.1 NR_031614 MI0006344 +HGNC:35305 MIR548F1 microRNA 548f-1 non-coding RNA RNA, micro Approved 10q21.1 10q21.1 hsa-mir-548f-1 MIRN548F1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302192 ENSG00000221594 uc031whl.1 NR_031642 MI0006374 +HGNC:35306 MIR548F2 microRNA 548f-2 non-coding RNA RNA, micro Approved 2q34 02q34 hsa-mir-548f-2 MIRN548F2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313771 ENSG00000221782 uc021vvy.1 NR_031643 MI0006375 +HGNC:35307 MIR548F3 microRNA 548f-3 non-coding RNA RNA, micro Approved 5q22.1 05q22.1 hsa-mir-548f-3 MIRN548F3 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302159 ENSG00000221436 uc032vgn.1 NR_031644 MI0006376 +HGNC:35308 MIR548F4 microRNA 548f-4 non-coding RNA RNA, micro Approved 7q35 07q35 hsa-mir-548f-4 MIRN548F4 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313895 ENSG00000221442 uc022aop.1 NR_031645 MI0006377 +HGNC:35309 MIR548F5 microRNA 548f-5 non-coding RNA RNA, micro Approved Xp21.1 Xp21.1 hsa-mir-548f-5 MIRN548F5 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302239 ENSG00000221348 uc033dxp.1 NR_031646 MI0006378 +HGNC:35326 MIR548G microRNA 548g non-coding RNA RNA, micro Approved 4q31.22 04q31.22 hsa-mir-548g MIRN548G MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313938 ENSG00000221369 uc032tzd.1 NR_031662 MI0006395 +HGNC:35342 MIR548H1 microRNA 548h-1 non-coding RNA RNA, micro Approved 14q23.2 14q23.2 hsa-mir-548h-1 MIRN548H1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313830 ENSG00000221537 uc032beg.1 NR_031677 MI0006411 +HGNC:35343 MIR548H2 microRNA 548h-2 non-coding RNA RNA, micro Approved 16p13.13 16p13.13 hsa-mir-548h-2 MIRN548H2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313773 ENSG00000221801 uc032drk.1 NR_031678 MI0006412 +HGNC:35344 MIR548H3 microRNA 548h-3 non-coding RNA RNA, micro Approved 17p12 17p12 hsa-mir-548h-3 MIRN548H3 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302287 ENSG00000221698 uc032euf.1 NR_031679 MI0006413 +HGNC:35345 MIR548H4 microRNA 548h-4 non-coding RNA RNA, micro Approved 8p21.2 08p21.2 hsa-mir-548h-4 MIRN548H4 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313884 ENSG00000221616 uc033bfp.1 NR_031680 MI0006414 +HGNC:41768 MIR548H5 microRNA 548h-5 non-coding RNA RNA, micro Approved 6 06 hsa-mir-548h-5 MicroRNAs 476 2011-05-02 2014-11-19 100616455 ENSG00000266807 uc032xly.1 NR_039610 MI0016751 +HGNC:35352 MIR548I1 microRNA 548i-1 non-coding RNA RNA, micro Approved 3q21.2 03q21.2 hsa-mir-548i-1 MIRN548I1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302204 ENSG00000221737 uc021xdg.1 NR_031687 MI0006421 +HGNC:35353 MIR548I2 microRNA 548i-2 non-coding RNA RNA, micro Approved 4p16.1 04p16.1 hsa-mir-548i-2 MIRN548I2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302277 ENSG00000221275 uc021xlt.1 NR_031688 MI0006422 +HGNC:35354 MIR548I3 microRNA 548i-3 non-coding RNA RNA, micro Approved 8p23.1 08p23.1 hsa-mir-548i-3 MIRN548I3 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302186 ENSG00000221305 uc022arn.1 NR_031689 MI0006423 +HGNC:35355 MIR548I4 microRNA 548i-4 non-coding RNA RNA, micro Approved Xq21.1 Xq21.1 hsa-mir-548i-4 MIRN548I4 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302191 ENSG00000221494 uc033elg.1 NR_031690 MI0006424 +HGNC:35276 MIR548J microRNA 548j non-coding RNA RNA, micro Approved 22q12.1 22q12.1 hsa-mir-548j MIRN548J MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313914 ENSG00000221760 uc021wnl.1 NR_031615 MI0006345 +HGNC:35285 MIR548K microRNA 548k non-coding RNA RNA, micro Approved 11q13.3 11q13.3 hsa-mir-548k MIRN548K MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313770 ENSG00000221333 uc021qmq.1 NR_031624 MI0006354 +HGNC:35292 MIR548L microRNA 548l non-coding RNA RNA, micro Approved 11 11 hsa-mir-548l MIRN548L MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302275 ENSG00000221230 uc031ybg.1 NR_031630 MI0006361 +HGNC:35331 MIR548M microRNA 548m non-coding RNA RNA, micro Approved Xq21.33 Xq21.33 hsa-mir-548m MIRN548M MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313772 ENSG00000221187 uc022bzz.2 NR_031667 MI0006400 +HGNC:35330 MIR548N microRNA 548n non-coding RNA RNA, micro Approved 7p14.3 07p14.3 hsa-mir-548n MIRN548N MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302152 ENSG00000221669 uc032zjm.1 NR_031666 MI0006399 +HGNC:35333 MIR548O microRNA 548o non-coding RNA RNA, micro Approved 7q22.1 07q22.1 hsa-mir-548o MIRN548O MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313829 ENSG00000221510 uc033abd.1 NR_031669 MI0006402 +HGNC:41882 MIR548O2 microRNA 548o-2 non-coding RNA RNA, micro Approved 20 20 hsa-mir-548o-2 MicroRNAs 476 2011-05-02 2014-11-19 100616190 ENSG00000275453 NR_039605 MI0016746 +HGNC:35351 MIR548P microRNA 548p non-coding RNA RNA, micro Approved 5q21.1 05q21.1 hsa-mir-548p MIRN548P MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302288 ENSG00000221263 uc032vel.1 NR_031686 MI0006420 +HGNC:37312 MIR548Q microRNA 548q non-coding RNA RNA, micro Approved 10p13 10p13 hsa-mir-548q MicroRNAs 476 2009-09-18 2014-11-19 100313841 ENSG00000221331 uc031vxn.1 NR_031752 MI0010637 +HGNC:38354 MIR548S microRNA 548s non-coding RNA RNA, micro Approved 2 02 hsa-mir-548s MicroRNAs 476 2010-04-30 2014-11-19 100422862 ENSG00000265056 uc032ner.1 NR_036071 MI0014141 +HGNC:38298 MIR548T microRNA 548t non-coding RNA RNA, micro Approved 4 04 hsa-mir-548t MicroRNAs 476 2010-04-30 2014-11-19 100422849 ENSG00000221296 uc032uen.1 NR_036093 MI0014164 +HGNC:38316 MIR548U microRNA 548u non-coding RNA RNA, micro Approved 6 06 hsa-mir-548u MicroRNAs 476 2010-04-30 2014-11-18 100422884 ENSG00000212017 uc032wzc.1 NR_036097 MI0014168 +HGNC:38302 MIR548V microRNA 548v non-coding RNA RNA, micro Approved 8p22 08p22 hsa-mir-548v MicroRNAs 476 2010-04-30 2015-07-22 100422850 ENSG00000265520 uc033bdu.1 NR_036103 MI0014174 +HGNC:38255 MIR548W microRNA 548w non-coding RNA RNA, micro Approved 16 16 hsa-mir-548w MicroRNAs 476 2010-04-30 2014-11-18 100422923 ENSG00000265005 uc032dvn.1 NR_036146 MI0014222 +HGNC:38248 MIR548X microRNA 548x non-coding RNA RNA, micro Approved 21 21 hsa-mir-548x MicroRNAs 476 2010-04-30 2014-11-18 100422920 ENSG00000265841 uc032pvs.1 NR_036166 MI0014244 +HGNC:41734 MIR548X2 microRNA 548x-2 non-coding RNA RNA, micro Approved 13 13 hsa-mir-548x-2 MicroRNAs 476 2011-05-02 2014-11-19 100616302 ENSG00000263581 uc032aim.1 NR_039692 MI0016833 +HGNC:52006 MIR548XHG MIR548X host gene non-coding RNA RNA, long non-coding Approved 21q21.1 21q21.1 2015-10-15 2015-10-15 101927797 ENSG00000224141 OTTHUMG00000074544 NR_109925 +HGNC:38980 MIR548Y microRNA 548y non-coding RNA RNA, micro Approved 14q21.3 14q21.3 hsa-mir-548y MicroRNAs 476 2010-09-15 2015-07-22 100500919 ENSG00000263945 uc021rsn.1 NR_037503 MI0016595 +HGNC:38929 MIR548Z microRNA 548z non-coding RNA RNA, micro Approved 12 12 hsa-mir-548z MicroRNAs 476 2010-09-15 2014-11-19 100500856 NR_037515 MI0016688 +HGNC:32803 MIR549A microRNA 549a non-coding RNA RNA, micro Approved 15q25.1 15q25.1 hsa-mir-549 "MIRN549|MIR549" microRNA 549 MicroRNAs 476 2006-05-16 2014-03-17 2014-03-17 2014-11-19 693132 ENSG00000208003 NR_030393 MI0003679 +HGNC:32804 MIR550A1 microRNA 550a-1 non-coding RNA RNA, micro Approved 7p14.3 07p14.3 hsa-mir-550-1 "MIRN550-1|MIR550-1" microRNA 550-1 MicroRNAs 476 2006-05-16 2010-09-13 2010-09-13 2014-11-19 693133 ENSG00000207771 uc022abd.1 NR_030319 MI0003600 +HGNC:32805 MIR550A2 microRNA 550a-2 non-coding RNA RNA, micro Approved 7p14.3 07p14.3 "hsa-mir-550-2|hsa-mir-550a-2" "MIRN550-2|MIR550-2" microRNA 550-2 MicroRNAs 476 2006-05-16 2010-09-13 2010-09-13 2014-11-19 693134 ENSG00000207573 uc022abm.1 NR_030320 MI0003601 +HGNC:41870 MIR550A3 microRNA 550a-3 non-coding RNA RNA, micro Approved 7 07 hsa-mir-550a-3 MicroRNAs 476 2011-05-02 2014-11-19 100616354 ENSG00000212024 uc022aay.1 NR_039600 MI0003762 +HGNC:38992 MIR550B1 microRNA 550b-1 non-coding RNA RNA, micro Approved 7 07 hsa-mir-550b-1 MicroRNAs 476 2010-09-15 2014-11-19 100500883 NR_037513 MI0016686 +HGNC:38910 MIR550B2 microRNA 550b-2 non-coding RNA RNA, micro Approved 7 07 hsa-mir-550b-2 MicroRNAs 476 2010-09-15 2014-11-19 100500830 NR_037514 MI0016687 +HGNC:32806 MIR551A microRNA 551a non-coding RNA RNA, micro Approved 1p36.32 01p36.32 hsa-mir-551a MIRN551A MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693135 ENSG00000207776 uc021ofa.2 NR_030277 615148 MI0003556 +HGNC:32807 MIR551B microRNA 551b non-coding RNA RNA, micro Approved 3q26.2 03q26.2 hsa-mir-551b MIRN551B MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693136 ENSG00000207717 uc021xha.1 NR_030294 RGD:2325355 MI0003575 +HGNC:32808 MIR552 microRNA 552 non-coding RNA RNA, micro Approved 1p34.3 01p34.3 hsa-mir-552 MIRN552 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693137 ENSG00000207941 uc031twx.1 NR_030278 MI0003557 +HGNC:32809 MIR553 microRNA 553 non-coding RNA RNA, micro Approved 1p21.2 01p21.2 hsa-mir-553 MIRN553 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693138 ENSG00000207750 uc021oqp.1 NR_030279 MI0003558 +HGNC:32810 MIR554 microRNA 554 non-coding RNA RNA, micro Approved 1q21.3 01q21.3 hsa-mir-554 MIRN554 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693139 ENSG00000207606 uc021oyr.1 NR_030280 MI0003559 +HGNC:32811 MIR555 microRNA 555 non-coding RNA RNA, micro Approved 1q22 01q22 hsa-mir-555 MIRN555 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693140 ENSG00000207720 uc021pay.1 NR_030282 MI0003561 +HGNC:32812 MIR556 microRNA 556 non-coding RNA RNA, micro Approved 1q23.3 01q23.3 hsa-mir-556 MIRN556 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693141 ENSG00000207729 uc021pdr.2 NR_030283 MI0003562 +HGNC:32813 MIR557 microRNA 557 non-coding RNA RNA, micro Approved 1q24.2 01q24.2 hsa-mir-557 MIRN557 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693142 ENSG00000207974 uc021pel.1 NR_030284 MI0003563 +HGNC:32814 MIR558 microRNA 558 non-coding RNA RNA, micro Approved 2p22.3 02p22.3 hsa-mir-558 MIRN558 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693143 ENSG00000207653 uc021vfr.1 NR_030285 616473 MI0003564 +HGNC:32815 MIR559 microRNA 559 non-coding RNA RNA, micro Approved 2p21 02p21 hsa-mir-559 MIRN559 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693144 ENSG00000207923 uc021vhd.1 NR_030286 MI0003565 +HGNC:32817 MIR561 microRNA 561 non-coding RNA RNA, micro Approved 2q32.1 02q32.1 hsa-mir-561 MIRN561 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693146 ENSG00000207951 uc021vtt.1 NR_030287 MI0003567 +HGNC:32818 MIR562 microRNA 562 non-coding RNA RNA, micro Approved 2 02 hsa-mir-562 MIRN562 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693147 ENSG00000207626 uc021vyf.1 NR_030288 MI0003568 +HGNC:32819 MIR563 microRNA 563 non-coding RNA RNA, micro Approved 3p25.1 03p25.1 hsa-mir-563 MIRN563 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693148 ENSG00000207815 uc021wtp.1 NR_030289 MI0003569 +HGNC:32820 MIR564 microRNA 564 non-coding RNA RNA, micro Approved 3p21.31 03p21.31 hsa-mir-564 MIRN564 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693149 ENSG00000207783 uc021wwr.1 NR_030290 MI0003570 +HGNC:32822 MIR566 microRNA 566 non-coding RNA RNA, micro Approved 3 03 hsa-mir-566 MIRN566 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693151 ENSG00000207922 uc032rms.1 NR_030291 MI0003572 +HGNC:32823 MIR567 microRNA 567 non-coding RNA RNA, micro Approved 3q13.2 03q13.2 hsa-mir-567 MIRN567 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693152 ENSG00000207940 uc021xck.1 NR_030292 MI0003573 +HGNC:32824 MIR568 microRNA 568 non-coding RNA RNA, micro Approved 3 03 hsa-mir-568 MIRN568 MicroRNAs 476 2006-05-16 2008-12-18 2016-10-10 693153 ENSG00000259976 uc003ebh.2 NR_030293 MI0003574 +HGNC:32825 MIR569 microRNA 569 non-coding RNA RNA, micro Approved 3q26.2 03q26.2 hsa-mir-569 MIRN569 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693154 ENSG00000207963 uc021xhh.1 NR_030295 MI0003576 +HGNC:32826 MIR570 microRNA 570 non-coding RNA RNA, micro Approved 3 03 hsa-mir-570 MIRN570 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693155 ENSG00000207650 uc021xjf.1 NR_030296 614538 MI0003577 +HGNC:32827 MIR571 microRNA 571 non-coding RNA RNA, micro Approved 4p16.3 04p16.3 hsa-mir-571 MIRN571 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693156 ENSG00000207642 uc032tah.1 NR_030297 MI0003578 +HGNC:32828 MIR572 microRNA 572 non-coding RNA RNA, micro Approved 4p15.33 04p15.33 hsa-mir-572 MIRN572 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693157 ENSG00000207716 uc021xmf.1 NR_030298 MI0003579 +HGNC:32829 MIR573 microRNA 573 non-coding RNA RNA, micro Approved 4p15.2 04p15.2 hsa-mir-573 MIRN573 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693158 ENSG00000207697 uc021xmx.1 NR_030299 MI0003580 +HGNC:32830 MIR574 microRNA 574 non-coding RNA RNA, micro Approved 4 04 hsa-mir-574 MIRN574 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693159 ENSG00000207944 uc021xno.1 NR_030300 615469 MI0003581 +HGNC:32831 MIR575 microRNA 575 non-coding RNA RNA, micro Approved 4q21.22 04q21.22 hsa-mir-575 MIRN575 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693160 ENSG00000207746 uc021xpn.1 NR_030301 MI0003582 +HGNC:32832 MIR576 microRNA 576 non-coding RNA RNA, micro Approved 4 04 hsa-mir-576 MIRN576 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693161 ENSG00000207988 uc021xqq.1 NR_030302 MI0003583 +HGNC:32833 MIR577 microRNA 577 non-coding RNA RNA, micro Approved 4q26 04q26 hsa-mir-577 MIRN577 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693162 ENSG00000207931 uc021xqw.1 NR_030303 MI0003584 +HGNC:32834 MIR578 microRNA 578 non-coding RNA RNA, micro Approved 4q32.3 04q32.3 hsa-mir-578 MIRN578 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693163 ENSG00000207559 uc021xua.1 NR_030304 MI0003585 +HGNC:32835 MIR579 microRNA 579 non-coding RNA RNA, micro Approved 5p13.3 05p13.3 hsa-mir-579 MIRN579 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693164 ENSG00000207956 uc032upu.1 NR_030305 MI0003586 +HGNC:32836 MIR580 microRNA 580 non-coding RNA RNA, micro Approved 5p13.2 05p13.2 hsa-mir-580 MIRN580 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693165 ENSG00000207756 uc021xxm.1 NR_030306 MI0003587 +HGNC:32837 MIR581 microRNA 581 non-coding RNA RNA, micro Approved 5q11.2 05q11.2 hsa-mir-581 MIRN581 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693166 ENSG00000207627 uc021xyk.1 NR_030307 MI0003588 +HGNC:32838 MIR582 microRNA 582 non-coding RNA RNA, micro Approved 5q12.1 05q12.1 hsa-mir-582 MIRN582 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693167 ENSG00000202601 uc021xyz.2 NR_030308 RGD:2325413 MI0003589 +HGNC:32839 MIR583 microRNA 583 non-coding RNA RNA, micro Approved 5q15 05q15 hsa-mir-583 MIRN583 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693168 ENSG00000207578 uc021ybp.1 NR_030309 MI0003590 +HGNC:32840 MIR584 microRNA 584 non-coding RNA RNA, micro Approved 5q32 05q32 hsa-mir-584 MIRN584 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693169 ENSG00000207714 uc021yfl.2 NR_030310 MI0003591 +HGNC:32841 MIR585 microRNA 585 non-coding RNA RNA, micro Approved 5q35.1 05q35.1 hsa-mir-585 MIRN585 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693170 ENSG00000207619 uc021yhm.1 NR_030311 MI0003592 +HGNC:32842 MIR586 microRNA 586 non-coding RNA RNA, micro Approved 6p21.1 06p21.1 hsa-mir-586 MIRN586 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693171 ENSG00000207769 uc021zab.1 NR_030313 MI0003594 +HGNC:32843 MIR587 microRNA 587 non-coding RNA RNA, micro Approved 6q21 06q21 hsa-mir-587 MIRN587 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693172 ENSG00000207577 uc032xgz.1 NR_030314 MI0003595 +HGNC:32844 MIR588 microRNA 588 non-coding RNA RNA, micro Approved 6q22.32 06q22.32 hsa-mir-588 MIRN588 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693173 ENSG00000207632 uc032xlk.1 NR_030316 MI0003597 +HGNC:32845 MIR589 microRNA 589 non-coding RNA RNA, micro Approved 7p22.1 07p22.1 hsa-mir-589 MIRN589 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693174 ENSG00000207973 uc021zzd.1 NR_030318 MI0003599 +HGNC:32846 MIR590 microRNA 590 non-coding RNA RNA, micro Approved 7q11.23 07q11.23 hsa-mir-590 MIRN590 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693175 ENSG00000207741 uc022afx.1 NR_030321 615070 MI0003602 +HGNC:32847 MIR591 microRNA 591 non-coding RNA RNA, micro Approved 7q21.3 07q21.3 hsa-mir-591 MIRN591 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693176 ENSG00000208025 uc022aho.1 NR_030322 MI0003603 +HGNC:32848 MIR592 microRNA 592 non-coding RNA RNA, micro Approved 7q31.33 07q31.33 hsa-mir-592 MIRN592 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693177 ENSG00000207692 uc022akt.2 NR_030323 RGD:2314878 MI0003604 +HGNC:32849 MIR593 microRNA 593 non-coding RNA RNA, micro Approved 7q32.1 07q32.1 hsa-mir-593 MIRN593 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693178 ENSG00000207588 uc022akw.1 NR_030324 MI0003605 +HGNC:32851 MIR595 microRNA 595 non-coding RNA RNA, micro Approved 7q36.3 07q36.3 hsa-mir-595 MIRN595 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693180 ENSG00000207637 uc022aql.1 NR_030325 MI0003607 +HGNC:32852 MIR596 microRNA 596 non-coding RNA RNA, micro Approved 8p23.3 08p23.3 hsa-mir-596 MIRN596 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693181 ENSG00000207826 uc022aqo.1 NR_030326 MI0003608 +HGNC:32853 MIR597 microRNA 597 non-coding RNA RNA, micro Approved 8p23.1 08p23.1 hsa-mir-597 MIRN597 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693182 ENSG00000207701 uc022arr.1 NR_030327 MI0003609 +HGNC:32854 MIR598 microRNA 598 non-coding RNA RNA, micro Approved 8p23.1 08p23.1 hsa-mir-598 MIRN598 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693183 ENSG00000207600 uc022arw.2 NR_030328 RGD:2325416 MI0003610 +HGNC:32855 MIR599 microRNA 599 non-coding RNA RNA, micro Approved 8q22.2 08q22.2 hsa-mir-599 MIRN599 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693184 ENSG00000207804 uc022azd.1 NR_030329 MI0003611 +HGNC:32856 MIR600 microRNA 600 non-coding RNA RNA, micro Approved 9q33.3 09q33.3 hsa-mir-600 MIRN600 MicroRNAs 476 2006-05-16 2008-12-18 2015-02-03 693185 ENSG00000274325 uc064voj.1 NR_030331 MI0003613 +HGNC:23642 MIR600HG MIR600 host gene non-coding RNA RNA, long non-coding Approved 9q33.3 09q33.3 "GL012|FLJ22161" "C9orf45|NCRNA00287" "chromosome 9 open reading frame 45|non-protein coding RNA 287|MIR600 host gene (non-protein coding)" Long non-coding RNAs 788 2003-11-27 2011-08-11 2015-02-20 2016-10-05 81571 ENSG00000236901 OTTHUMG00000020635 uc004bnp.5 BC015678 NR_026677 12477932 +HGNC:32857 MIR601 microRNA 601 non-coding RNA RNA, micro Approved 9q33.3 09q33.3 hsa-mir-601 MIRN601 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693186 ENSG00000207991 uc022bnd.1 NR_030332 MI0003614 +HGNC:32858 MIR602 microRNA 602 non-coding RNA RNA, micro Approved 9q34.3 09q34.3 hsa-mir-602 MIRN602 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-18 693187 ENSG00000207693 uc022bqm.1 NR_030333 MI0003615 +HGNC:32859 MIR603 microRNA 603 non-coding RNA RNA, micro Approved 10 10 hsa-mir-603 MIRN603 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693188 ENSG00000207930 uc021poj.1 NR_030334 MI0003616 +HGNC:32860 MIR604 microRNA 604 non-coding RNA RNA, micro Approved 10p11.23 10p11.23 hsa-mir-604 MIRN604 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693189 ENSG00000207612 uc021por.1 NR_030335 MI0003617 +HGNC:32861 MIR605 microRNA 605 non-coding RNA RNA, micro Approved 10q21.1 10q21.1 hsa-mir-605 MIRN605 MicroRNAs 476 2006-05-16 2008-12-18 2014-11-19 693190 ENSG00000207813 uc021pqt.1 NR_030336 MI0003618 +HGNC:32862 MIR606 microRNA 606 non-coding RNA RNA, micro Approved 10q22.2 10q22.2 hsa-mir-606 MIRN606 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693191 ENSG00000207583 uc031wll.1 NR_030337 MI0003619 +HGNC:32863 MIR607 microRNA 607 non-coding RNA RNA, micro Approved 10 10 hsa-mir-607 MIRN607 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693192 ENSG00000207976 uc031wqa.1 NR_030338 MI0003620 +HGNC:32864 MIR608 microRNA 608 non-coding RNA RNA, micro Approved 10q24.31 10q24.31 hsa-mir-608 MIRN608 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693193 ENSG00000207551 uc021pxa.1 NR_030339 MI0003621 +HGNC:32865 MIR609 microRNA 609 non-coding RNA RNA, micro Approved 10q25.1 10q25.1 hsa-mir-609 MIRN609 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-18 693194 ENSG00000208033 uc021pxq.1 NR_030340 MI0003622 +HGNC:32866 MIR610 microRNA 610 non-coding RNA RNA, micro Approved 11p14.1 11p14.1 hsa-mir-610 MIRN610 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693195 ENSG00000207874 uc021qfg.1 NR_030341 612330 MI0003623 +HGNC:32867 MIR611 microRNA 611 non-coding RNA RNA, micro Approved 11q12.2 11q12.2 hsa-mir-611 MIRN611 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693196 ENSG00000207601 uc021qki.1 NR_030342 MI0003624 +HGNC:32868 MIR612 microRNA 612 non-coding RNA RNA, micro Approved 11q13.1 11q13.1 hsa-mir-612 MIRN612 MicroRNAs 476 2006-05-17 2008-12-18 2015-02-03 693197 ENSG00000273834 uc058dju.1 NR_030343 MI0003625 +HGNC:32869 MIR613 microRNA 613 non-coding RNA RNA, micro Approved 12p13.1 12p13.1 hsa-mir-613 MIRN613 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693198 ENSG00000207983 uc021qvl.1 NR_030344 MI0003626 +HGNC:32870 MIR614 microRNA 614 non-coding RNA RNA, micro Approved 12p13.1 12p13.1 hsa-mir-614 MIRN614 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693199 ENSG00000207817 uc001rbb.4 NR_030345 MI0003627 +HGNC:32871 MIR615 microRNA 615 non-coding RNA RNA, micro Approved 12q13.13 12q13.13 hsa-mir-615 MIRN615 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-18 693200 ENSG00000207571 uc021qyl.1 NR_030753 RGD:2314884 MI0003628 +HGNC:32872 MIR616 microRNA 616 non-coding RNA RNA, micro Approved 12q13.3 12q13.3 hsa-mir-616 MIRN616 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693201 ENSG00000208028 uc021qzm.3 NR_030346 614489 MI0003629 +HGNC:32873 MIR617 microRNA 617 non-coding RNA RNA, micro Approved 12q21.31 12q21.31 hsa-mir-617 MIRN617 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693202 ENSG00000207763 uc021rbb.1 NR_030348 MI0003631 +HGNC:32874 MIR618 microRNA 618 non-coding RNA RNA, micro Approved 12q21.31 12q21.31 hsa-mir-618 MIRN618 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-18 693203 ENSG00000208022 uc021rbc.1 NR_030349 MI0003632 +HGNC:32875 MIR619 microRNA 619 non-coding RNA RNA, micro Approved 12q24.11 12q24.11 hsa-mir-619 MIRN619 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693204 ENSG00000207622 uc031zmm.1 NR_030350 MI0003633 +HGNC:32876 MIR620 microRNA 620 non-coding RNA RNA, micro Approved 12 12 hsa-mir-620 MIRN620 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693205 ENSG00000207967 uc021reh.1 NR_030351 MI0003634 +HGNC:32877 MIR621 microRNA 621 non-coding RNA RNA, micro Approved 13q14.11 13q14.11 hsa-mir-621 MIRN621 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693206 ENSG00000207652 uc021rir.1 NR_030352 MI0003635 +HGNC:32878 MIR622 microRNA 622 non-coding RNA RNA, micro Approved 13q31.3 13q31.3 hsa-mir-622 MIRN622 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693207 ENSG00000207858 uc021rld.1 NR_030754 MI0003636 +HGNC:32879 MIR623 microRNA 623 non-coding RNA RNA, micro Approved 13q32.3 13q32.3 hsa-mir-623 MIRN623 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693208 ENSG00000207719 uc021rmb.1 NR_030353 MI0003637 +HGNC:32880 MIR624 microRNA 624 non-coding RNA RNA, micro Approved 14q12 14q12 hsa-mir-624 MIRN624 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693209 ENSG00000207952 uc021rrx.1 NR_030354 MI0003638 +HGNC:32881 MIR625 microRNA 625 non-coding RNA RNA, micro Approved 14q23.3 14q23.3 hsa-mir-625 MIRN625 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693210 ENSG00000207781 uc021rux.1 NR_030355 MI0003639 +HGNC:32882 MIR626 microRNA 626 non-coding RNA RNA, micro Approved 15q15.1 15q15.1 hsa-mir-626 MIRN626 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693211 ENSG00000207766 uc021sjm.1 NR_030356 MI0003640 +HGNC:32883 MIR627 microRNA 627 non-coding RNA RNA, micro Approved 15q15.1 15q15.1 hsa-mir-627 MIRN627 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693212 ENSG00000207712 uc021sjq.1 NR_030357 MI0003641 +HGNC:32884 MIR628 microRNA 628 non-coding RNA RNA, micro Approved 15q21.3 15q21.3 hsa-mir-628 MIRN628 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693213 ENSG00000207964 uc021smv.2 NR_030358 RGD:2325480 MI0003642 +HGNC:32885 MIR629 microRNA 629 non-coding RNA RNA, micro Approved 15q23 15q23 hsa-mir-629 MIRN629 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-18 693214 ENSG00000207965 uc021spm.1 NR_030714 MI0003643 +HGNC:32886 MIR630 microRNA 630 non-coding RNA RNA, micro Approved 15q24.1 15q24.1 hsa-mir-630 MIRN630 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693215 ENSG00000207690 uc021spw.1 NR_030359 MI0003644 +HGNC:32887 MIR631 microRNA 631 non-coding RNA RNA, micro Approved 15q24.2 15q24.2 hsa-mir-631 MIRN631 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693216 ENSG00000207636 uc021sqo.1 NR_030360 MI0003645 +HGNC:32888 MIR632 microRNA 632 non-coding RNA RNA, micro Approved 17q11.2 17q11.2 hsa-mir-632 MIRN632 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693217 ENSG00000207928 uc021tuw.1 NR_030362 RGD:2325479 MI0003647 +HGNC:32889 MIR633 microRNA 633 non-coding RNA RNA, micro Approved 17q23.2 17q23.2 hsa-mir-633 MIRN633 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693218 ENSG00000207552 uc021ubj.1 NR_030363 MI0003648 +HGNC:32890 MIR634 microRNA 634 non-coding RNA RNA, micro Approved 17q24.2 17q24.2 hsa-mir-634 MIRN634 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693219 ENSG00000207943 uc021ubx.1 NR_030364 MI0003649 +HGNC:32891 MIR635 microRNA 635 non-coding RNA RNA, micro Approved 17q24.2 17q24.2 hsa-mir-635 MIRN635 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693220 ENSG00000207561 uc021ucf.1 NR_030365 MI0003650 +HGNC:32892 MIR636 microRNA 636 non-coding RNA RNA, micro Approved 17q25.1 17q25.1 hsa-mir-636 MIRN636 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693221 ENSG00000207556 uc021udo.1 NR_030366 MI0003651 +HGNC:32893 MIR637 microRNA 637 non-coding RNA RNA, micro Approved 19p13.3 19p13.3 hsa-mir-637 MIRN637 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693222 ENSG00000207733 uc021umy.1 NR_030367 MI0003652 +HGNC:32894 MIR638 microRNA 638 non-coding RNA RNA, micro Approved 19p13.2 19p13.2 hsa-mir-638 MIRN638 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693223 ENSG00000207972 uc021uoz.1 NR_030368 MI0003653 +HGNC:32895 MIR639 microRNA 639 non-coding RNA RNA, micro Approved 19p13.12 19p13.12 hsa-mir-639 MIRN639 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693224 ENSG00000207707 uc021upw.1 NR_030369 MI0003654 +HGNC:32896 MIR640 microRNA 640 non-coding RNA RNA, micro Approved 19p13.11 19p13.11 hsa-mir-640 MIRN640 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693225 ENSG00000207821 uc032hpj.1 NR_030370 MI0003655 +HGNC:32897 MIR641 microRNA 641 non-coding RNA RNA, micro Approved 19q13.2 19q13.2 hsa-mir-641 MIRN641 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693226 ENSG00000207631 uc021uur.1 NR_030371 MI0003656 +HGNC:32898 MIR642A microRNA 642a non-coding RNA RNA, micro Approved 19q13.32 19q13.32 hsa-mir-642 "MIRN642|MIR642" microRNA 642 MicroRNAs 476 2006-05-17 2010-09-13 2010-09-13 2014-11-18 693227 ENSG00000207773 uc021uvx.1 NR_030372 MI0003657 +HGNC:38902 MIR642B microRNA 642b non-coding RNA RNA, micro Approved 19 19 hsa-mir-642b MicroRNAs 476 2010-09-15 2014-11-19 100500845 ENSG00000283212 NR_037512 MI0016685 +HGNC:32899 MIR643 microRNA 643 non-coding RNA RNA, micro Approved 19q13.41 19q13.41 hsa-mir-643 MIRN643 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-18 693228 ENSG00000208002 uc021uyt.2 NR_030373 MI0003658 +HGNC:32900 MIR644A microRNA 644a non-coding RNA RNA, micro Approved 20q11.22 20q11.22 hsa-mir-644 "MIRN644|MIR644" microRNA 644 MicroRNAs 476 2006-05-17 2011-11-14 2011-11-14 2014-11-19 693229 ENSG00000207997 uc021wcb.1 NR_030374 MI0003659 +HGNC:32901 MIR645 microRNA 645 non-coding RNA RNA, micro Approved 20q13.13 20q13.13 hsa-mir-645 MIRN645 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693230 ENSG00000208018 uc021wet.1 NR_030375 MI0003660 +HGNC:32902 MIR646 microRNA 646 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-646 MIRN646 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693231 ENSG00000207802 uc032poe.1 NR_030376 MI0003661 +HGNC:27659 MIR646HG MIR646 host gene non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 MIR646 host gene (non-protein coding) 2014-06-13 2015-02-20 2015-02-20 284757 ENSG00000228340 OTTHUMG00000032883 NR_046099 +HGNC:32903 MIR647 microRNA 647 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-647 MIRN647 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693232 ENSG00000207554 uc021wgn.1 NR_030377 MI0003662 +HGNC:32904 MIR648 microRNA 648 non-coding RNA RNA, micro Approved 22q11.21 22q11.21 hsa-mir-648 MIRN648 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693233 ENSG00000207780 uc021wks.1 NR_030378 616205 MI0003663 +HGNC:32905 MIR649 microRNA 649 non-coding RNA RNA, micro Approved 22 22 hsa-mir-649 MIRN649 MicroRNAs 476 2006-05-17 2008-12-18 2014-11-19 693234 ENSG00000207575 uc021wma.1 NR_030379 MI0003664 +HGNC:32906 MIR650 microRNA 650 non-coding RNA RNA, micro Approved 22q11.22 22q11.22 hsa-mir-650 MIRN650 MicroRNAs 476 2006-05-24 2008-12-18 2014-11-19 723778 ENSG00000207836 uc062cdj.1 NR_030755 615379 MI0003665 +HGNC:32907 MIR651 microRNA 651 non-coding RNA RNA, micro Approved Xp22.31 Xp22.31 hsa-mir-651 MIRN651 MicroRNAs 476 2006-05-24 2008-12-18 2014-11-18 723779 ENSG00000207628 uc022bsi.2 NR_030380 MI0003666 +HGNC:32908 MIR652 microRNA 652 non-coding RNA RNA, micro Approved Xq23 Xq23 hsa-mir-652 MIRN652 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724022 ENSG00000208013 uc022cci.2 NR_030381 RGD:2325439 MI0003667 +HGNC:32909 MIR653 microRNA 653 non-coding RNA RNA, micro Approved 7q21.3 07q21.3 hsa-mir-653 MIRN653 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724023 ENSG00000208014 uc022ahj.1 NR_030388 RGD:2314881 MI0003674 +HGNC:32910 MIR654 microRNA 654 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-654 MIRN654 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-18 724024 ENSG00000207934 uc021sda.1 NR_030390 MI0003676 +HGNC:32911 MIR655 microRNA 655 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-655 MIRN655 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724025 ENSG00000207646 uc021sdj.1 NR_030391 MI0003677 +HGNC:32912 MIR656 microRNA 656 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-656 MIRN656 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724026 ENSG00000207959 uc021sdv.1 NR_030392 616376 MI0003678 +HGNC:32913 MIR657 microRNA 657 non-coding RNA RNA, micro Approved 17q25.3 17q25.3 hsa-mir-657 MIRN657 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724027 ENSG00000207736 uc021uev.1 NR_030394 MI0003681 +HGNC:32914 MIR658 microRNA 658 non-coding RNA RNA, micro Approved 22q13.1 22q13.1 hsa-mir-658 MIRN658 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724028 ENSG00000207945 uc021wpj.1 NR_030395 MI0003682 +HGNC:32915 MIR659 microRNA 659 non-coding RNA RNA, micro Approved 22q13.1 22q13.1 hsa-mir-659 MIRN659 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-18 724029 ENSG00000207696 uc021wpk.1 NR_030396 613556 MI0003683 +HGNC:32916 MIR660 microRNA 660 non-coding RNA RNA, micro Approved Xp11.23 Xp11.23 hsa-mir-660 MIRN660 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724030 ENSG00000207970 uc022bwk.2 NR_030397 MI0003684 +HGNC:32917 MIR661 microRNA 661 non-coding RNA RNA, micro Approved 8q24.3 08q24.3 hsa-mir-661 MIRN661 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724031 ENSG00000207574 uc022bcl.1 NR_030383 613716 MI0003669 +HGNC:32918 MIR662 microRNA 662 non-coding RNA RNA, micro Approved 16p13.3 16p13.3 hsa-mir-662 MIRN662 MicroRNAs 476 2006-06-12 2008-12-18 2014-11-19 724032 ENSG00000207579 uc021tac.1 NR_030384 MI0003670 +HGNC:32919 MIR663A microRNA 663a non-coding RNA RNA, micro Approved 20p11.1 20p11.1 hsa-mir-663 "MIRN663|MIR663" microRNA 663 MicroRNAs 476 2006-06-12 2011-11-14 2011-11-14 2015-02-03 724033 ENSG00000273684 uc021wbn.1 NR_030386 MI0003672 +HGNC:27662 MIR663AHG MIR663A host gene non-coding RNA RNA, long non-coding Approved 20p11.1 20p11.1 RP3-410C9.1 MIR663A host gene (non-protein coding) 2014-06-12 2015-02-20 2015-02-20 284801 ENSG00000227195 OTTHUMG00000032149 NR_040095 24932682 +HGNC:35270 MIR663B microRNA 663b non-coding RNA RNA, micro Approved 2 02 hsa-mir-663b MIRN663B MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313824 ENSG00000221288 uc021vpu.1 NR_031608 MI0006336 +HGNC:35370 MIR664A microRNA 664a non-coding RNA RNA, micro Approved 1 01 hsa-mir-664 "MIRN664|MIR664" microRNA 664 MicroRNAs 476 2008-11-03 2014-03-17 2014-03-17 2014-11-19 100302234 ENSG00000281696 NR_031705 MI0006442 +HGNC:43501 MIR664B microRNA 664b non-coding RNA RNA, micro Approved X X hsa-mir-664b MIR644B microRNA 644b 2011-11-14 2014-03-17 2014-03-17 2014-03-17 100847052 NR_049842 MI0019134 +HGNC:33662 MIR665 microRNA 665 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-665 MIRN665 MicroRNAs 476 2007-10-24 2008-12-18 2016-10-10 100126315 ENSG00000283159 NR_030617 MI0005563 +HGNC:33135 MIR668 microRNA 668 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-668 MIRN668 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-19 768214 ENSG00000276352 NR_030408 MI0003761 +HGNC:37304 MIR670 microRNA 670 non-coding RNA RNA, micro Approved 11 11 hsa-mir-670 MicroRNAs 476 2009-09-18 2014-11-19 100313777 ENSG00000211568 uc021qgk.1 NR_031577 MI0003933 +HGNC:49204 MIR670HG MIR670 host gene non-coding RNA RNA, long non-coding Approved 11p11.2 11p11.2 MIR670 host gene (non-protein coding) 2013-10-08 2015-02-20 2015-02-20 100507261 ENSG00000235661 OTTHUMG00000154881 NR_131246 MGI:3041234 +HGNC:33134 MIR671 microRNA 671 non-coding RNA RNA, micro Approved 7q36.1 07q36.1 hsa-mir-671 MIRN671 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-19 768213 ENSG00000211517 uc022aqb.1 NR_030407 RGD:2325494 615245 MI0003760 +HGNC:33351 MIR675 microRNA 675 non-coding RNA RNA, micro Approved 11p15.5 11p15.5 hsa-mir-675 MIRN675 MicroRNAs 476 2007-02-16 2008-12-18 2015-02-03 100033819 ENSG00000278648 uc057xwb.1 NR_030533 RGD:2314883 615509 MI0005416 +HGNC:38880 MIR676 microRNA 676 non-coding RNA RNA, micro Approved X X hsa-mir-676 MicroRNAs 476 2010-09-15 2014-11-19 100500887 ENSG00000211991 NR_037494 MI0016436 +HGNC:33654 MIR708 microRNA 708 non-coding RNA RNA, micro Approved 11q14.1 11q14.1 hsa-mir-708 MIRN708 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126333 ENSG00000211997 uc021qoc.1 NR_030598 RGD:2325357 MI0005543 +HGNC:37316 MIR711 microRNA 711 non-coding RNA RNA, micro Approved 3 03 hsa-mir-711 MicroRNAs 476 2009-09-18 2014-11-18 100313843 ENSG00000211535 uc021wxp.1 NR_031756 RGD:2325468 MI0012488 +HGNC:37317 MIR718 microRNA 718 non-coding RNA RNA, micro Approved X X hsa-mir-718 MicroRNAs 476 2009-09-18 2014-11-19 100313781 ENSG00000211524 uc022cid.2 NR_031757 300929 MI0012489 +HGNC:35375 MIR720 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0006654 +HGNC:33658 MIR744 microRNA 744 non-coding RNA RNA, micro Approved 17p12 17p12 hsa-mir-744 MIRN744 MicroRNAs 476 2007-10-24 2008-12-18 2015-02-03 100126313 ENSG00000266297 uc021tqg.1 NR_030613 MI0005559 +HGNC:33133 MIR758 microRNA 758 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-758 MIRN758 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-19 768212 ENSG00000211582 uc021scp.1 NR_030406 MI0003757 +HGNC:37307 MIR759 microRNA 759 non-coding RNA RNA, micro Approved 13 13 hsa-mir-759 MicroRNAs 476 2009-09-18 2014-11-19 100313778 ENSG00000211579 uc021rjz.2 NR_031582 MI0004065 +HGNC:33666 MIR760 microRNA 760 non-coding RNA RNA, micro Approved 1p22.1 01p22.1 hsa-mir-760 MIRN760 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126348 ENSG00000211575 uc021oqa.2 NR_030621 RGD:2325489 MI0005567 +HGNC:37305 MIR761 microRNA 761 non-coding RNA RNA, micro Approved 1 01 hsa-mir-761 MicroRNAs 476 2009-09-18 2014-11-19 100313892 ENSG00000212076 uc021onj.2 NR_031580 RGD:2325411 MI0003941 +HGNC:37303 MIR762 microRNA 762 non-coding RNA RNA, micro Approved 16 16 hsa-mir-762 MicroRNAs 476 2009-09-18 2014-11-19 100313837 ENSG00000211591 uc021tgs.1 NR_031576 MI0003892 +HGNC:51386 MIR762HG MIR762 host gene non-coding RNA RNA, long non-coding Approved 16p11.2 16p11.2 MIR762 host gene (non-protein coding) 2014-10-23 2015-02-20 2015-02-20 101928736 ENSG00000260083 OTTHUMG00000176766 NR_110940 +HGNC:37306 MIR764 microRNA 764 non-coding RNA RNA, micro Approved X X hsa-mir-764 MicroRNAs 476 2009-09-18 2014-11-18 100313838 ENSG00000212100 uc022ccw.1 NR_031581 RGD:2325352 MI0003944 +HGNC:33141 MIR765 microRNA 765 non-coding RNA RNA, micro Approved 1q23.1 01q23.1 hsa-mir-765 MIRN765 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-19 768220 ENSG00000211581 uc021pbj.1 NR_030527 MI0005116 +HGNC:33139 MIR766 microRNA 766 non-coding RNA RNA, micro Approved Xq24 Xq24 hsa-mir-766 MIRN766 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-19 768218 ENSG00000211578 uc022cdl.2 NR_030413 MI0003836 +HGNC:33136 MIR767 microRNA 767 non-coding RNA RNA, micro Approved Xq28 Xq28 hsa-mir-767 MIRN767 MicroRNAs 476 2006-10-10 2008-12-18 2006-10-10 2014-11-19 768215 ENSG00000211583 uc022chd.2 NR_030409 MI0003763 +HGNC:33138 MIR769 microRNA 769 non-coding RNA RNA, micro Approved 19q13.32 19q13.32 hsa-mir-769 MIRN769 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-19 768217 ENSG00000211580 uc021uwe.1 NR_030412 MI0003834 +HGNC:33143 MIR770 microRNA 770 non-coding RNA RNA, micro Approved 14q32.2 14q32.2 hsa-mir-770 MIRN770 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-19 768222 ENSG00000211574 uc021sbz.1 NR_030528 RGD:2325415 MI0005118 +HGNC:33140 MIR802 microRNA 802 non-coding RNA RNA, micro Approved 21q22.12 21q22.12 hsa-mir-802 MIRN802 MicroRNAs 476 2006-10-10 2008-12-18 2014-11-19 768219 ENSG00000211590 uc021wix.1 NR_030414 RGD:2325478 616090 MI0003906 +HGNC:33663 MIR873 microRNA 873 non-coding RNA RNA, micro Approved 9p21.1 09p21.1 hsa-mir-873 MIRN873 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126316 ENSG00000215939 uc022bfe.2 NR_030618 RGD:2325356 616137 MI0005564 +HGNC:33643 MIR874 microRNA 874 non-coding RNA RNA, micro Approved 5q31.2 05q31.2 hsa-mir-874 MIRN874 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126343 ENSG00000216009 uc021ydz.2 NR_030588 RGD:2325511 MI0005532 +HGNC:33652 MIR875 microRNA 875 non-coding RNA RNA, micro Approved 8q22.2 08q22.2 hsa-mir-875 MIRN875 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126309 ENSG00000216069 uc022aze.1 NR_030596 RGD:2325477 MI0005541 +HGNC:33653 MIR876 microRNA 876 non-coding RNA RNA, micro Approved 9p21.1 09p21.1 hsa-mir-876 MIRN876 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126310 ENSG00000215966 uc022bfd.1 NR_030597 RGD:2325412 MI0005542 +HGNC:33660 MIR877 microRNA 877 non-coding RNA RNA, micro Approved 6p21.33 06p21.33 hsa-mir-877 MIRN877 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126314 ENSG00000216101 uc021yud.2 NR_030615 RGD:2325510 611619 MI0005561 +HGNC:33659 MIR885 microRNA 885 non-coding RNA RNA, micro Approved 3p25.3 03p25.3 hsa-mir-885 MIRN885 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126334 ENSG00000216135 uc021wta.2 NR_030614 MI0005560 +HGNC:33661 MIR887 microRNA 887 non-coding RNA RNA, micro Approved 5p15.1 05p15.1 hsa-mir-887 MIRN887 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126347 ENSG00000216077 uc021xwr.2 NR_030616 MI0005562 +HGNC:33648 MIR888 microRNA 888 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-888 MIRN888 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126306 ENSG00000216005 uc022cfp.1 NR_030592 MI0005537 +HGNC:33651 MIR889 microRNA 889 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-889 MIRN889 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126345 ENSG00000216099 uc021sdh.2 NR_030595 MI0005540 +HGNC:33644 MIR890 microRNA 890 non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-890 MIRN890 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126303 ENSG00000216075 uc022cfo.1 NR_030589 MI0005533 +HGNC:33635 MIR891A microRNA 891a non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-891a MIRN891A MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126341 ENSG00000216056 uc022cft.1 NR_030581 MI0005524 +HGNC:33645 MIR891B microRNA 891b non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-891b MIRN891B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126304 ENSG00000216064 uc022cfs.1 NR_030590 MI0005534 +HGNC:33639 MIR892A microRNA 892a non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-892a MIRN892A MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126342 ENSG00000215943 uc022cfq.1 NR_030584 MI0005528 +HGNC:33649 MIR892B microRNA 892b non-coding RNA RNA, micro Approved Xq27.3 Xq27.3 hsa-mir-892b MIRN892B MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126307 ENSG00000216098 uc022cfr.1 NR_030593 MI0005538 +HGNC:50194 MIR892C microRNA 892c non-coding RNA RNA, micro Approved X X hsa-mir-892c MicroRNAs 476 2014-03-24 2014-11-18 102466721 ENSG00000252219 NR_106783 MI0022560 +HGNC:33670 MIR920 microRNA 920 non-coding RNA RNA, micro Approved 12p12.1 12p12.1 hsa-mir-920 MIRN920 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126320 ENSG00000216192 uc021qwc.1 NR_030625 MI0005712 +HGNC:33671 MIR921 microRNA 921 non-coding RNA RNA, micro Approved 1q24.1 01q24.1 hsa-mir-921 MIRN921 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126349 ENSG00000215952 uc021peg.1 NR_030626 MI0005713 +HGNC:33672 MIR922 microRNA 922 non-coding RNA RNA, micro Approved 3q29 03q29 hsa-mir-922 MIRN922 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126321 ENSG00000216042 uc021xjw.1 NR_030627 MI0005714 +HGNC:33673 MIR923 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0005715 +HGNC:33674 MIR924 microRNA 924 non-coding RNA RNA, micro Approved 18q12.3 18q12.3 hsa-mir-924 MIRN924 MicroRNAs 476 2007-10-24 2008-12-18 2011-09-12 100126323 ENSG00000283615 NR_030628 MI0005716 +HGNC:44332 MIR924HG MIR924 host gene non-coding RNA RNA, long non-coding Approved 18q12.2-q12.3 18q12.2-q12.3 LINC00669 long intergenic non-protein coding RNA 669 2012-08-13 2015-10-15 2015-10-15 2015-10-15 647946 "AK090603|BG220862|DB038664" NR_024391 +HGNC:33676 MIR933 microRNA 933 non-coding RNA RNA, micro Approved 2q31.1 02q31.1 hsa-mir-933 MIRN933 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126350 ENSG00000215973 uc021vso.1 NR_030630 MI0005755 +HGNC:33677 MIR934 microRNA 934 non-coding RNA RNA, micro Approved Xq26.3 Xq26.3 hsa-mir-934 MIRN934 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126324 ENSG00000216060 uc022cev.1 NR_030631 MI0005756 +HGNC:33678 MIR935 microRNA 935 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-935 MIRN935 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126325 ENSG00000215998 uc021vbd.1 NR_030632 MI0005757 +HGNC:33679 MIR936 microRNA 936 non-coding RNA RNA, micro Approved 10q25.1 10q25.1 hsa-mir-936 MIRN936 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126326 ENSG00000216083 uc021pxp.1 NR_030760 MI0005758 +HGNC:33680 MIR937 microRNA 937 non-coding RNA RNA, micro Approved 8q24.3 08q24.3 hsa-mir-937 MIRN937 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126338 ENSG00000216090 uc022bck.1 NR_030633 MI0005759 +HGNC:33681 MIR938 microRNA 938 non-coding RNA RNA, micro Approved 10p11.23 10p11.23 hsa-mir-938 MIRN938 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126327 ENSG00000216035 uc021pos.1 NR_030634 MI0005760 +HGNC:33682 MIR939 microRNA 939 non-coding RNA RNA, micro Approved 8q24.3 08q24.3 hsa-mir-939 MIRN939 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-18 100126351 ENSG00000216133 uc022bcn.1 NR_030635 MI0005761 +HGNC:33683 MIR940 microRNA 940 non-coding RNA RNA, micro Approved 16p13.3 16p13.3 hsa-mir-940 MIRN940 MicroRNAs 476 2007-10-24 2008-12-18 2016-10-10 100126328 ENSG00000260778 uc059plp.1 NR_030636 MI0005762 +HGNC:33684 MIR941-1 microRNA 941-1 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-941-1 MIRN941-1 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126329 ENSG00000283206 uc061yqg.1 NR_030637 MI0005763 +HGNC:33685 MIR941-2 microRNA 941-2 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-941-2 MIRN941-2 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126339 ENSG00000216141 NR_030638 MI0005764 +HGNC:33686 MIR941-3 microRNA 941-3 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-941-3 MIRN941-3 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126352 ENSG00000283513 uc061yqd.1 NR_030639 MI0005765 +HGNC:33687 MIR941-4 microRNA 941-4 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-941-4 MIRN941-4 MicroRNAs 476 2007-10-24 2009-03-19 2011-09-12 100126330 ENSG00000216195 uc021wgl.2 NR_040032 MI0005766 +HGNC:50845 MIR941-5 microRNA 941-5 non-coding RNA RNA, micro Approved 20 20 MicroRNAs 476 2014-06-26 2014-06-26 103504732 ENSG00000275842 NR_128719 MI0031520 +HGNC:33688 MIR942 microRNA 942 non-coding RNA RNA, micro Approved 1p13.1 01p13.1 hsa-mir-942 MIRN942 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126331 ENSG00000215930 uc021osm.1 NR_030640 MI0005767 +HGNC:33689 MIR943 microRNA 943 non-coding RNA RNA, micro Approved 4p16.3 04p16.3 hsa-mir-943 MIRN943 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126332 ENSG00000216105 uc021xkm.1 NR_030641 MI0005768 +HGNC:33690 MIR944 microRNA 944 non-coding RNA RNA, micro Approved 3q28 03q28 hsa-mir-944 MIRN944 MicroRNAs 476 2007-10-24 2008-12-18 2014-11-19 100126340 ENSG00000216058 uc021xis.1 NR_030642 MI0005769 +HGNC:35259 MIR1178 microRNA 1178 non-coding RNA RNA, micro Approved 12q24.23 12q24.23 hsa-mir-1178 MIRN1178 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302274 ENSG00000221323 uc021rer.1 NR_031589 MI0006271 +HGNC:35260 MIR1179 microRNA 1179 non-coding RNA RNA, micro Approved 15 15 hsa-mir-1179 MIRN1179 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302235 ENSG00000221630 uc021suc.2 NR_031590 MI0006272 +HGNC:35261 MIR1180 microRNA 1180 non-coding RNA RNA, micro Approved 17 17 hsa-mir-1180 MIRN1180 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302256 ENSG00000221540 uc021trz.1 NR_031591 MI0006273 +HGNC:35262 MIR1181 microRNA 1181 non-coding RNA RNA, micro Approved 19 19 hsa-mir-1181 MIRN1181 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302213 ENSG00000221566 uc021uov.1 NR_031592 MI0006274 +HGNC:35263 MIR1182 microRNA 1182 non-coding RNA RNA, micro Approved 1q42.2 01q42.2 hsa-mir-1182 MIRN1182 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302132 ENSG00000221290 uc021pkk.1 NR_031593 MI0006275 +HGNC:35264 MIR1183 microRNA 1183 non-coding RNA RNA, micro Approved 7 07 hsa-mir-1183 MIRN1183 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302122 ENSG00000221783 uc022aal.1 NR_031594 MI0006276 +HGNC:35265 MIR1184-1 microRNA 1184-1 non-coding RNA RNA, micro Approved Xq28 Xq28 hsa-mir-1184 "MIRN1184|MIR1184" microRNA 1184 MicroRNAs 476 2008-11-03 2010-09-13 2010-09-13 2014-11-19 100302111 ENSG00000221533 uc022cil.1 NR_036049 MI0006277 +HGNC:38211 MIR1184-2 microRNA 1184-2 non-coding RNA RNA, micro Approved X X hsa-mir-1184-2 MicroRNAs 476 2010-04-30 2014-11-19 100422985 ENSG00000221190 uc022cim.1 NR_036259 MI0015971 +HGNC:38389 MIR1184-3 microRNA 1184-3 non-coding RNA RNA, micro Approved X X hsa-mir-1184-3 MicroRNAs 476 2010-04-30 2014-11-19 100422977 ENSG00000221603 uc022cin.1 NR_036260 MI0015972 +HGNC:35257 MIR1185-1 microRNA 1185-1 non-coding RNA RNA, micro Approved 14 14 hsa-mir-1185-1 MIRN1185-1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302157 ENSG00000221525 uc021sdd.2 NR_031575 MI0003844 +HGNC:35254 MIR1185-2 microRNA 1185-2 non-coding RNA RNA, micro Approved 14 14 hsa-mir-1185-2 MIRN1185-2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302209 ENSG00000221614 uc021sde.2 NR_031571 MI0003821 +HGNC:38247 MIR1193 microRNA 1193 non-coding RNA RNA, micro Approved 14 14 hsa-mir-1193 MicroRNAs 476 2010-04-30 2014-11-19 100422837 ENSG00000221036 uc021scs.2 NR_036132 MI0014205 +HGNC:35376 MIR1197 microRNA 1197 non-coding RNA RNA, micro Approved 14 14 hsa-mir-1197 MIRN1197 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302250 ENSG00000221745 uc021sco.2 NR_031713 MI0006656 +HGNC:50081 MIR1199 microRNA 1199 non-coding RNA RNA, micro Approved 19 19 hsa-mir-1199 MicroRNAs 476 2014-03-24 2014-11-19 102466515 NR_106715 MI0020340 +HGNC:35266 MIR1200 microRNA 1200 non-coding RNA RNA, micro Approved 7p14.2 07p14.2 hsa-mir-1200 MIRN1200 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302113 ENSG00000221325 uc022abw.1 NR_031604 MI0006332 +HGNC:35268 MIR1202 microRNA 1202 non-coding RNA RNA, micro Approved 6 06 hsa-mir-1202 MIRN1202 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302259 ENSG00000221456 uc032xqq.1 NR_031606 MI0006334 +HGNC:35269 MIR1203 microRNA 1203 non-coding RNA RNA, micro Approved 17 17 hsa-mir-1203 MIRN1203 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302211 ENSG00000221739 uc021tze.1 NR_031607 MI0006335 +HGNC:37059 MIR1204 microRNA 1204 non-coding RNA RNA, micro Approved 8q24.21 08q24.21 hsa-mir-1204 MicroRNAs 476 2009-04-06 2015-01-29 100302185 ENSG00000275264 uc022bbf.1 NR_031609 MI0006337 +HGNC:35271 MIR1205 microRNA 1205 non-coding RNA RNA, micro Approved 8 08 hsa-mir-1205 MIRN1205 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302161 ENSG00000221771 uc022bbg.1 NR_031610 MI0006338 +HGNC:35272 MIR1206 microRNA 1206 non-coding RNA RNA, micro Approved 8 08 hsa-mir-1206 MIRN1206 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302170 ENSG00000283200 NR_031611 MI0006339 +HGNC:35273 MIR1207 microRNA 1207 non-coding RNA RNA, micro Approved 8 08 hsa-mir-1207 MIRN1207 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302175 ENSG00000221176 uc022bbj.1 NR_031612 MI0006340 +HGNC:35274 MIR1208 microRNA 1208 non-coding RNA RNA, micro Approved 8q24.21 08q24.21 hsa-mir-1208 MIRN1208 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302281 ENSG00000221261 uc022bbk.1 NR_031613 MI0006341 +HGNC:33923 MIR1224 microRNA 1224 non-coding RNA RNA, micro Approved 3q27.1 03q27.1 hsa-mir-1224 MIRN1224 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100187716 ENSG00000221120 uc021xih.1 NR_030410 RGD:2325484 611620 MI0003764 +HGNC:33931 MIR1225 microRNA 1225 non-coding RNA RNA, micro Approved 16p13.3 16p13.3 hsa-mir-1225 MIRN1225 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100188847 ENSG00000221656 uc021tap.1 NR_030646 611621 MI0006311 +HGNC:33922 MIR1226 microRNA 1226 non-coding RNA RNA, micro Approved 3p21.31 03p21.31 hsa-mir-1226 MIRN1226 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100302232 ENSG00000221585 uc021wxj.1 NR_031595 MI0006313 +HGNC:33932 MIR1227 microRNA 1227 non-coding RNA RNA, micro Approved 19 19 hsa-mir-1227 MIRN1227 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100302283 ENSG00000221411 uc021umq.1 NR_031596 MI0006316 +HGNC:33928 MIR1228 microRNA 1228 non-coding RNA RNA, micro Approved 12 12 hsa-mir-1228 MIRN1228 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100302201 ENSG00000221365 uc021qzh.1 NR_031597 MI0006318 +HGNC:33924 MIR1229 microRNA 1229 non-coding RNA RNA, micro Approved 5 05 hsa-mir-1229 MIRN1229 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100302156 ENSG00000221394 uc021yjg.1 NR_031598 MI0006319 +HGNC:33921 MIR1231 microRNA 1231 non-coding RNA RNA, micro Approved 1 01 hsa-mir-1231 MIRN1231 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-18 100302158 ENSG00000221028 uc021phj.1 NR_031599 617040 MI0006321 +HGNC:33929 MIR1233-1 microRNA 1233-1 non-coding RNA RNA, micro Approved 15 15 hsa-mir-1233 "MIRN1233|MIR1233" microRNA 1233 MicroRNAs 476 2008-01-07 2010-09-13 2010-09-13 2014-11-18 100302160 ENSG00000221649 uc021sit.1 NR_036050 MI0006323 +HGNC:38277 MIR1233-2 microRNA 1233-2 non-coding RNA RNA, micro Approved 15 15 hsa-mir-1233-2 MicroRNAs 476 2010-04-30 2014-11-19 100422845 ENSG00000221065 uc021six.1 NR_036261 MI0015973 +HGNC:33926 MIR1234 microRNA 1234 non-coding RNA RNA, micro Approved 8 08 hsa-mir-1234 MIRN1234 MicroRNAs 476 2008-01-07 2008-12-18 2015-01-29 100302196 uc064rmc.1 NR_031600 MI0006324 +HGNC:33925 MIR1236 microRNA 1236 non-coding RNA RNA, micro Approved 6 06 hsa-mir-1236 MIRN1236 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100302242 ENSG00000221267 uc021yvc.1 NR_031601 MI0006326 +HGNC:33927 MIR1237 microRNA 1237 non-coding RNA RNA, micro Approved 11 11 hsa-mir-1237 MIRN1237 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-18 100302280 ENSG00000221273 uc021qkv.1 NR_031602 MI0006327 +HGNC:33933 MIR1238 microRNA 1238 non-coding RNA RNA, micro Approved 19 19 hsa-mir-1238 MIRN1238 MicroRNAs 476 2008-01-07 2008-12-18 2014-11-19 100302226 ENSG00000221410 uc021uoy.1 NR_031603 MI0006328 +HGNC:35304 MIR1243 microRNA 1243 non-coding RNA RNA, micro Approved 4 04 hsa-mir-1243 MIRN1243 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302188 ENSG00000283193 NR_031641 MI0006373 +HGNC:35310 MIR1244-1 microRNA 1244-1 non-coding RNA RNA, micro Approved 2q37.1 02q37.1 hsa-mir-1244 "MIRN1244|MIR1244" microRNA 1244 MicroRNAs 476 2008-11-03 2010-09-13 2010-09-13 2015-07-30 100302285 NR_036052 MI0006379 +HGNC:38321 MIR1244-2 microRNA 1244-2 non-coding RNA RNA, micro Approved 5q23.1 05q23.1 hsa-mir-1244-2 MicroRNAs 476 2010-04-30 2015-07-30 100422885 ENSG00000283498 NR_036262 MI0015974 +HGNC:38390 MIR1244-3 microRNA 1244-3 non-coding RNA RNA, micro Approved 12p13.31 12p13.31 hsa-mir-1244-3 MicroRNAs 476 2010-04-30 2015-07-30 100422872 ENSG00000283429 NR_036263 MI0015975 +HGNC:50831 MIR1244-4 microRNA 1244-4 non-coding RNA RNA, micro Approved 12 12 MicroRNAs 476 2014-06-26 2014-06-26 103504734 ENSG00000283475 NR_128710 MI0031511 +HGNC:35311 MIR1245A microRNA 1245a non-coding RNA RNA, micro Approved 2q32.2 02q32.2 hsa-mir-1245 "MIRN1245|MIR1245" microRNA 1245 MicroRNAs 476 2008-11-03 2011-11-14 2011-11-14 2014-11-19 100302219 ENSG00000221502 uc021vtv.2 NR_031647 MI0006380 +HGNC:41794 MIR1245B microRNA 1245b non-coding RNA RNA, micro Approved 2 02 hsa-mir-1245b MicroRNAs 476 2011-05-02 2014-11-19 100616324 ENSG00000283238 NR_039947 MI0017431 +HGNC:35312 MIR1246 microRNA 1246 non-coding RNA RNA, micro Approved 2q31.1 02q31.1 hsa-mir-1246 MIRN1246 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302142 ENSG00000283203 NR_031648 MI0006381 +HGNC:35313 MIR1247 microRNA 1247 non-coding RNA RNA, micro Approved 14q32.31 14q32.31 hsa-mir-1247 MIRN1247 MicroRNAs 476 2008-11-03 2008-12-18 2015-01-29 100302145 ENSG00000277601 uc021sdw.1 NR_031649 MI0006382 +HGNC:35314 MIR1248 microRNA 1248 non-coding RNA RNA, micro Approved 3q27.3 03q27.3 hsa-mir-1248 MIRN1248 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302143 uc062rfa.1 NR_031650 MI0006383 +HGNC:35315 MIR1249 microRNA 1249 non-coding RNA RNA, micro Approved 22q13.31 22q13.31 hsa-mir-1249 MIRN1249 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302149 ENSG00000221598 uc021wrh.2 NR_031651 RGD:4888573 MI0006384 +HGNC:35316 MIR1250 microRNA 1250 non-coding RNA RNA, micro Approved 17 17 hsa-mir-1250 MIRN1250 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302229 ENSG00000221025 uc021uex.1 NR_031652 MI0006385 +HGNC:35317 MIR1251 microRNA 1251 non-coding RNA RNA, micro Approved 12 12 hsa-mir-1251 MIRN1251 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302289 ENSG00000221479 uc021rcf.2 NR_031653 MI0006386 +HGNC:35365 MIR1252 microRNA 1252 non-coding RNA RNA, micro Approved 12q24.23 12q24.23 hsa-mir-1252 MIRN1252 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302136 ENSG00000221788 uc021ray.1 NR_031700 MI0006434 +HGNC:35318 MIR1253 microRNA 1253 non-coding RNA RNA, micro Approved 17 17 hsa-mir-1253 MIRN1253 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302208 ENSG00000221200 OTTHUMG00000185966 uc021tnr.1 NR_031654 MI0006387 +HGNC:35319 MIR1254-1 microRNA 1254-1 non-coding RNA RNA, micro Approved 10q21.3 10q21.3 hsa-mir-1254 "MIRN1254|MIR1254" microRNA 1254 MicroRNAs 476 2008-11-03 2011-11-14 2011-11-14 2014-11-18 100302273 ENSG00000221184 uc031wjw.1 NR_031655 MI0006388 +HGNC:41770 MIR1254-2 microRNA 1254-2 non-coding RNA RNA, micro Approved 10 10 hsa-mir-1254-2 MicroRNAs 476 2011-05-02 2014-11-19 100616217 ENSG00000264574 uc031vzt.1 NR_039606 MI0016747 +HGNC:35320 MIR1255A microRNA 1255a non-coding RNA RNA, micro Approved 4 04 hsa-mir-1255a MIRN1255A MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302193 ENSG00000221265 uc032trr.1 NR_031656 MI0006389 +HGNC:35366 MIR1255B1 microRNA 1255b-1 non-coding RNA RNA, micro Approved 4 04 hsa-mir-1255b-1 MIRN1255B1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313806 ENSG00000283207 NR_031701 MI0006435 +HGNC:35367 MIR1255B2 microRNA 1255b-2 non-coding RNA RNA, micro Approved 1 01 hsa-mir-1255b-2 MIRN1255B2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100313835 ENSG00000221545 uc031vdn.1 NR_031702 MI0006436 +HGNC:35321 MIR1256 microRNA 1256 non-coding RNA RNA, micro Approved 1 01 hsa-mir-1256 MIRN1256 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302155 ENSG00000221808 uc031tsa.1 NR_031657 MI0006390 +HGNC:35322 MIR1257 microRNA 1257 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-1257 MIRN1257 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302168 ENSG00000221417 uc021wfv.1 NR_031658 MI0006391 +HGNC:35323 MIR1258 microRNA 1258 non-coding RNA RNA, micro Approved 2q31.3 02q31.3 hsa-mir-1258 MIRN1258 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302172 ENSG00000221240 uc021vtd.1 NR_031659 614488 MI0006392 +HGNC:35325 MIR1260A microRNA 1260a non-coding RNA RNA, micro Approved 14 14 hsa-mir-1260 "MIRN1260|MIR1260" microRNA 1260 MicroRNAs 476 2008-11-03 2011-11-14 2011-11-14 2014-11-19 100302236 ENSG00000221754 uc021rws.1 NR_031661 MI0006394 +HGNC:38258 MIR1260B microRNA 1260b non-coding RNA RNA, micro Approved 11 11 hsa-mir-1260b MicroRNAs 476 2010-04-30 2014-11-18 100422991 ENSG00000266192 uc021qoz.2 NR_036125 615372 MI0014197 +HGNC:35327 MIR1261 microRNA 1261 non-coding RNA RNA, micro Approved 11 11 hsa-mir-1261 MIRN1261 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302228 ENSG00000221586 uc031yak.1 NR_031663 MI0006396 +HGNC:35328 MIR1262 microRNA 1262 non-coding RNA RNA, micro Approved 1p31.3 01p31.3 hsa-mir-1262 MIRN1262 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302279 ENSG00000221203 uc021oos.1 NR_031664 MI0006397 +HGNC:35329 MIR1263 microRNA 1263 non-coding RNA RNA, micro Approved 3q26.1 03q26.1 hsa-mir-1263 MIRN1263 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302148 ENSG00000221251 uc032sig.1 NR_031665 MI0006398 +HGNC:35246 MIR1264 microRNA 1264 non-coding RNA RNA, micro Approved X X hsa-mir-1264 MIRN1264 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302251 ENSG00000276158 NR_031563 MI0003758 +HGNC:35332 MIR1265 microRNA 1265 non-coding RNA RNA, micro Approved 10 10 hsa-mir-1265 MIRN1265 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302116 ENSG00000221371 uc021pne.1 NR_031668 MI0006401 +HGNC:35334 MIR1266 microRNA 1266 non-coding RNA RNA, micro Approved 15 15 hsa-mir-1266 MIRN1266 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302202 ENSG00000221052 uc021smp.2 NR_031670 MI0006403 +HGNC:35335 MIR1267 microRNA 1267 non-coding RNA RNA, micro Approved 13 13 hsa-mir-1267 MIRN1267 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302286 ENSG00000221650 uc032aol.1 NR_031671 MI0006404 +HGNC:35336 MIR1268A microRNA 1268a non-coding RNA RNA, micro Approved 15q11.2 15q11.2 hsa-mir-1268 "MIRN1268|MIR1268" microRNA 1268 MicroRNAs 476 2008-11-03 2011-11-14 2011-11-14 2014-11-19 100302233 ENSG00000221641 uc032bvh.1 NR_031672 MI0006405 +HGNC:41581 MIR1268B microRNA 1268b non-coding RNA RNA, micro Approved 17 17 hsa-mir-1268b MicroRNAs 476 2011-05-02 2014-11-19 100616121 ENSG00000265561 NR_039607 MI0016748 +HGNC:35337 MIR1269A microRNA 1269a non-coding RNA RNA, micro Approved 4 04 hsa-mir-1269 "MIRN1269|MIR1269" microRNA 1269 MicroRNAs 476 2008-11-03 2011-11-14 2011-11-14 2014-11-19 100302177 ENSG00000221563 uc032tlf.1 NR_031673 MI0006406 +HGNC:41787 MIR1269B microRNA 1269b non-coding RNA RNA, micro Approved 17 17 hsa-mir-1269b MicroRNAs 476 2011-05-02 2014-11-19 100616494 ENSG00000265503 uc032etz.1 NR_039747 MI0016888 +HGNC:35338 MIR1270 microRNA 1270 non-coding RNA RNA, micro Approved 19p12 19p12 "hsa-mir-1270|hsa-mir-1270-2" "MIRN1270|MIR1270-2|MIR1270-1" "microRNA 1270-2|microRNA 1270-1" MicroRNAs 476 2008-11-03 2014-04-28 2014-04-28 2014-11-19 100302179 ENSG00000238517 NR_036053 MI0006407 +HGNC:35252 MIR1271 microRNA 1271 non-coding RNA RNA, micro Approved 5q35 05q35 hsa-mir-1271 MIRN1271 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302203 ENSG00000221464 uc032vuu.1 NR_031569 MI0003814 +HGNC:35339 MIR1272 microRNA 1272 non-coding RNA RNA, micro Approved 15 15 hsa-mir-1272 MIRN1272 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302184 ENSG00000221033 uc021soy.1 NR_031674 MI0006408 +HGNC:35340 MIR1273A microRNA 1273a non-coding RNA RNA, micro Approved 8q22.2 08q22.2 hsa-mir-1273 "MIRN1273|MIR1273" microRNA 1273 MicroRNAs 476 2008-11-03 2011-11-14 2011-11-14 2014-11-19 100302165 ENSG00000221753 uc033bul.1 NR_031675 MI0006409 +HGNC:38173 MIR1273C microRNA 1273c non-coding RNA RNA, micro Approved 6 06 hsa-mir-1273c MicroRNAs 476 2010-04-30 2014-11-19 100422821 ENSG00000264814 uc032xpz.1 NR_036100 MI0014171 +HGNC:38375 MIR1273D microRNA 1273d non-coding RNA RNA, micro Approved 1 01 hsa-mir-1273d MicroRNAs 476 2010-04-30 2014-11-18 100422970 ENSG00000264881 uc031tof.1 NR_036176 MI0014254 +HGNC:50833 MIR1273E microRNA 1273e non-coding RNA RNA, micro Approved 17 17 MicroRNAs 476 2014-06-26 2014-06-26 100526648 ENSG00000265031 NR_128706 MI0016059 +HGNC:41733 MIR1273F microRNA 1273f non-coding RNA RNA, micro Approved 1 01 hsa-mir-1273f MicroRNAs 476 2011-05-02 2014-11-19 100616156 ENSG00000264834 uc031uau.1 NR_039971 MI0018002 +HGNC:41684 MIR1273G microRNA 1273g non-coding RNA RNA, micro Approved 1 01 hsa-mir-1273g MicroRNAs 476 2011-05-02 2014-11-19 100616145 ENSG00000265815 uc031uaw.1 NR_039972 MI0018003 +HGNC:49973 MIR1273H microRNA 1273h non-coding RNA RNA, micro Approved 16 16 hsa-mir-1273h MicroRNAs 476 2014-03-24 2014-11-19 102466247 ENSG00000274466 NR_106996 MI0025512 +HGNC:35341 MIR1274A entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0006410 +HGNC:35358 MIR1274B entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0006427 +HGNC:35346 MIR1275 microRNA 1275 non-coding RNA RNA, micro Approved 6 06 hsa-mir-1275 MIRN1275 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302123 ENSG00000221697 uc021yyr.1 NR_031681 MI0006415 +HGNC:35347 MIR1276 microRNA 1276 non-coding RNA RNA, micro Approved 15q25.3 15q25.3 hsa-mir-1276 MIRN1276 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302121 ENSG00000221634 uc021stx.1 NR_031682 MI0006416 +HGNC:35350 MIR1277 microRNA 1277 non-coding RNA RNA, micro Approved Xq24 Xq24 hsa-mir-1277 MIRN1277 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302214 ENSG00000221463 uc022cdf.2 NR_031685 MI0006419 +HGNC:35356 MIR1278 microRNA 1278 non-coding RNA RNA, micro Approved 1 01 hsa-mir-1278 MIRN1278 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302163 ENSG00000221680 uc021pgq.1 NR_031691 MI0006425 +HGNC:35357 MIR1279 microRNA 1279 non-coding RNA RNA, micro Approved 12 12 hsa-mir-1279 MIRN1279 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302182 ENSG00000283476 NR_031692 MI0006426 +HGNC:35368 MIR1280 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0006437 +HGNC:35359 MIR1281 microRNA 1281 non-coding RNA RNA, micro Approved 22 22 hsa-mir-1281 MIRN1281 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302237 ENSG00000221160 uc021wqd.1 NR_031694 MI0006428 +HGNC:35360 MIR1282 microRNA 1282 non-coding RNA RNA, micro Approved 15 15 hsa-mir-1282 MIRN1282 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302254 ENSG00000221792 uc021ske.1 NR_031695 MI0006429 +HGNC:35255 MIR1283-1 microRNA 1283-1 non-coding RNA RNA, micro Approved 19 19 hsa-mir-1283-1 MIRN1283-1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302265 ENSG00000221421 uc021uzr.1 NR_031573 MI0003832 +HGNC:35361 MIR1283-2 microRNA 1283-2 non-coding RNA RNA, micro Approved 19 19 hsa-mir-1283-2 MIRN1283-2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302205 ENSG00000221548 uc021vax.1 NR_031696 MI0006430 +HGNC:35362 MIR1284 microRNA 1284 non-coding RNA RNA, micro Approved 3 03 hsa-mir-1284 MIRN1284 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302112 ENSG00000221264 uc021xap.1 NR_031697 MI0006431 +HGNC:35277 MIR1285-1 microRNA 1285-1 non-coding RNA RNA, micro Approved 7q21-q22 07q21-q22 hsa-mir-1285-1 MIRN1285-1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302218 ENSG00000221520 uc032zxa.1 NR_031616 MI0006346 +HGNC:35278 MIR1285-2 microRNA 1285-2 non-coding RNA RNA, micro Approved 2 02 hsa-mir-1285-2 MIRN1285-2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302268 ENSG00000221238 uc032nqo.1 NR_031617 MI0006347 +HGNC:35279 MIR1286 microRNA 1286 non-coding RNA RNA, micro Approved 22 22 hsa-mir-1286 MIRN1286 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302118 ENSG00000221039 uc021wls.2 NR_031618 MI0006348 +HGNC:35280 MIR1287 microRNA 1287 non-coding RNA RNA, micro Approved 10q24.2 10q24.2 hsa-mir-1287 MIRN1287 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302133 ENSG00000221419 uc021pwu.1 NR_031619 MI0006349 +HGNC:35363 MIR1288 microRNA 1288 non-coding RNA RNA, micro Approved 17 17 hsa-mir-1288 MIRN1288 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302124 ENSG00000221355 uc021tqr.1 NR_031698 MI0006432 +HGNC:35281 MIR1289-1 microRNA 1289-1 non-coding RNA RNA, micro Approved 20 20 hsa-mir-1289-1 MIRN1289-1 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302125 ENSG00000221763 uc032pia.1 NR_031620 MI0006350 +HGNC:35282 MIR1289-2 microRNA 1289-2 non-coding RNA RNA, micro Approved 5 05 hsa-mir-1289-2 MIRN1289-2 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302134 ENSG00000221287 uc021ydn.1 NR_031621 MI0006351 +HGNC:35283 MIR1290 microRNA 1290 non-coding RNA RNA, micro Approved 1 01 hsa-mir-1290 MIRN1290 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302276 ENSG00000221662 uc031trl.1 NR_031622 MI0006352 +HGNC:35284 MIR1291 microRNA 1291 non-coding RNA RNA, micro Approved 12 12 hsa-mir-1291 MIRN1291 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302221 ENSG00000281842 NR_031623 MI0006353 +HGNC:35364 MIR1292 microRNA 1292 non-coding RNA RNA, micro Approved 20 20 hsa-mir-1292 MIRN1292 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302138 ENSG00000221062 uc021vzv.1 NR_031699 614155 MI0006433 +HGNC:35286 MIR1293 microRNA 1293 non-coding RNA RNA, micro Approved 12 12 hsa-mir-1293 MIRN1293 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302220 ENSG00000221604 uc021qxu.1 NR_031625 MI0006355 +HGNC:35287 MIR1294 microRNA 1294 non-coding RNA RNA, micro Approved 5 05 hsa-mir-1294 MIRN1294 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302181 ENSG00000221430 uc032voy.1 NR_031626 MI0006356 +HGNC:35288 MIR1295A microRNA 1295a non-coding RNA RNA, micro Approved 1 01 hsa-mir-1295 "MIRN1295|MIR1295" microRNA 1295 MicroRNAs 476 2008-11-03 2011-11-14 2011-11-14 2014-11-19 100302178 ENSG00000221390 uc021pes.1 NR_031627 MI0006357 +HGNC:43524 MIR1295B microRNA 1295b non-coding RNA RNA, micro Approved 1 01 hsa-mir-1295b 2011-11-14 2011-11-14 100847009 ENSG00000283598 NR_049854 MI0019146 +HGNC:35249 MIR1296 microRNA 1296 non-coding RNA RNA, micro Approved 10 10 hsa-mir-1296 MIRN1296 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302150 ENSG00000221063 uc021prk.2 NR_031566 MI0003780 +HGNC:35289 MIR1297 microRNA 1297 non-coding RNA RNA, micro Approved 13 13 hsa-mir-1297 MIRN1297 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302187 ENSG00000283126 NR_031628 MI0006358 +HGNC:35258 MIR1298 microRNA 1298 non-coding RNA RNA, micro Approved X X hsa-mir-1298 MIRN1298 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302153 ENSG00000221710 uc022ccz.1 NR_031578 MI0003938 +HGNC:35290 MIR1299 microRNA 1299 non-coding RNA RNA, micro Approved 9p11.2 09p11.2 hsa-mir-1299 MIRN1299 MicroRNAs 476 2008-11-03 2008-12-18 2015-01-29 100302167 ENSG00000275377 uc033crw.1 NR_031629 MI0006359 +HGNC:35291 MIR1300 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0006360 +HGNC:35253 MIR1301 microRNA 1301 non-coding RNA RNA, micro Approved 2 02 hsa-mir-1301 MIRN1301 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302246 ENSG00000221445 uc021veq.2 NR_031570 MI0003815 +HGNC:35293 MIR1302-1 microRNA 1302-1 non-coding RNA RNA, micro Approved 12q24.13 12q24.13 hsa-mir-1302-1 MIRN1302-1 MicroRNAs 476 2008-11-03 2008-12-18 2015-07-24 100302227 ENSG00000283507 NR_031631 MI0006362 +HGNC:35294 MIR1302-2 microRNA 1302-2 non-coding RNA RNA, micro Approved 1p36.33 01p36.33 hsa-mir-1302-2 MIRN1302-2 MicroRNAs 476 2008-11-03 2008-12-18 2016-10-10 100302278 ENSG00000243485 uc031tlb.1 NR_036051 MI0006363 +HGNC:35295 MIR1302-3 microRNA 1302-3 non-coding RNA RNA, micro Approved 2q13 02q13 hsa-mir-1302-3 MIRN1302-3 MicroRNAs 476 2008-11-03 2008-12-18 2015-07-24 100302128 ENSG00000221055 uc032nze.1 NR_031632 MI0006364 +HGNC:35296 MIR1302-4 microRNA 1302-4 non-coding RNA RNA, micro Approved 2q33.3 02q33.3 hsa-mir-1302-4 MIRN1302-4 MicroRNAs 476 2008-11-03 2008-12-18 2015-07-24 100302130 ENSG00000221628 uc032oqw.1 NR_031633 MI0006365 +HGNC:35297 MIR1302-5 microRNA 1302-5 non-coding RNA RNA, micro Approved 20q13.13 20q13.13 hsa-mir-1302-5 MIRN1302-5 MicroRNAs 476 2008-11-03 2008-12-18 2015-07-24 100302146 ENSG00000221091 uc032pmi.1 NR_031634 MI0006366 +HGNC:35298 MIR1302-6 microRNA 1302-6 non-coding RNA RNA, micro Approved 7p21.1 07p21.1 hsa-mir-1302-6 MIRN1302-6 MicroRNAs 476 2008-11-03 2008-12-18 2015-07-24 100302140 ENSG00000221393 uc032zfx.1 NR_031635 MI0006367 +HGNC:35299 MIR1302-7 microRNA 1302-7 non-coding RNA RNA, micro Approved 8q24.3 08q24.3 hsa-mir-1302-7 MIRN1302-7 MicroRNAs 476 2008-11-03 2008-12-18 2015-07-24 100302147 ENSG00000221768 NR_031636 MI0006368 +HGNC:35300 MIR1302-8 microRNA 1302-8 non-coding RNA RNA, micro Approved 9q22.33 09q22.33 hsa-mir-1302-8 MIRN1302-8 MicroRNAs 476 2008-11-03 2008-12-18 2015-07-24 100302223 ENSG00000221269 uc033dcl.1 NR_031637 MI0006369 +HGNC:38218 MIR1302-9 microRNA 1302-9 non-coding RNA RNA, micro Approved 9p24.3 09p24.3 hsa-mir-1302-9 MicroRNAs 476 2010-04-30 2016-10-10 100422831 ENSG00000227518 uc033cjs.1 NR_036266 MI0015978 +HGNC:38233 MIR1302-10 microRNA 1302-10 non-coding RNA RNA, micro Approved 15q26.3 15q26.3 hsa-mir-1302-10 MicroRNAs 476 2010-04-30 2016-10-10 100422834 ENSG00000259553 uc032csz.1 NR_036267 MI0015979 +HGNC:38246 MIR1302-11 microRNA 1302-11 non-coding RNA RNA, micro Approved 19p13.3 19p13.3 hsa-mir-1302-11 MicroRNAs 476 2010-04-30 2016-10-10 100422919 ENSG00000282807 uc032hiw.1 NR_036268 MI0015980 +HGNC:35301 MIR1303 microRNA 1303 non-coding RNA RNA, micro Approved 5 05 hsa-mir-1303 MIRN1303 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302284 ENSG00000221552 uc032voz.1 NR_031638 MI0006370 +HGNC:35302 MIR1304 microRNA 1304 non-coding RNA RNA, micro Approved 15q21.2 15q21.2 hsa-mir-1304 MIRN1304 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302240 ENSG00000221170 uc021qot.1 NR_031639 MI0006371 +HGNC:35303 MIR1305 microRNA 1305 non-coding RNA RNA, micro Approved 4q34.3 04q34.3 hsa-mir-1305 MIRN1305 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302270 ENSG00000221227 uc021xuw.1 NR_031640 MI0006372 +HGNC:35371 MIR1306 microRNA 1306 non-coding RNA RNA, micro Approved 22 22 hsa-mir-1306 MIRN1306 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302197 ENSG00000221366 uc062bqa.1 NR_031706 RGD:7489022 MI0006443 +HGNC:35372 MIR1307 microRNA 1307 non-coding RNA RNA, micro Approved 10 10 hsa-mir-1307 MIRN1307 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302174 ENSG00000221767 uc021pxm.1 NR_031707 MI0006444 +HGNC:35369 MIR1308 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0006441 +HGNC:35373 MIR1321 microRNA 1321 non-coding RNA RNA, micro Approved Xq21.2 Xq21.2 hsa-mir-1321 MIRN1321 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302171 ENSG00000283435 NR_031710 MI0006652 +HGNC:35374 MIR1322 microRNA 1322 non-coding RNA RNA, micro Approved 8 08 hsa-mir-1322 MIRN1322 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302166 ENSG00000283210 NR_031711 MI0006653 +HGNC:35251 MIR1323 microRNA 1323 non-coding RNA RNA, micro Approved 19q13.42 19q13.42 hsa-mir-1323 MIRN1323 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302255 ENSG00000221017 uc021uzl.1 NR_031568 MI0003786 +HGNC:35377 MIR1324 microRNA 1324 non-coding RNA RNA, micro Approved 3 03 hsa-mir-1324 MIRN1324 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302212 ENSG00000221795 uc021xar.1 NR_031714 MI0006657 +HGNC:41902 MIR1343 microRNA 1343 non-coding RNA RNA, micro Approved 11 11 hsa-mir-1343 MicroRNAs 476 2011-05-02 2014-11-19 100616437 ENSG00000251862 uc021qfv.1 NR_039836 MI0017320 +HGNC:35250 MIR1468 microRNA 1468 non-coding RNA RNA, micro Approved X X hsa-mir-1468 MIRN1468 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302115 ENSG00000222532 uc022bya.1 NR_031567 MI0003782 +HGNC:35378 MIR1469 microRNA 1469 non-coding RNA RNA, micro Approved 15q26.2 15q26.2 hsa-mir-1469 MIRN1469 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302258 ENSG00000222651 uc021swi.1 NR_031715 MI0007074 +HGNC:35379 MIR1470 microRNA 1470 non-coding RNA RNA, micro Approved 19p13.12 19p13.12 hsa-mir-1470 MIRN1470 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302127 ENSG00000269782 uc021upx.1 NR_031716 MI0007075 +HGNC:35380 MIR1471 microRNA 1471 non-coding RNA RNA, micro Approved 2 02 hsa-mir-1471 MIRN1471 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302126 ENSG00000222246 uc021vyd.1 NR_031717 MI0007076 +HGNC:35381 MIR1537 microRNA 1537 non-coding RNA RNA, micro Approved 1 01 hsa-mir-1537 MIRN1537 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302139 ENSG00000222831 uc021pkv.1 NR_031718 MI0007258 +HGNC:35382 MIR1538 microRNA 1538 non-coding RNA RNA, micro Approved 16 16 hsa-mir-1538 MIRN1538 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302119 ENSG00000223109 uc021tkh.1 NR_031719 MI0007259 +HGNC:35383 MIR1539 microRNA 1539 non-coding RNA RNA, micro Approved 18q21.1 18q21.1 hsa-mir-1539 MIRN1539 MicroRNAs 476 2008-11-03 2008-12-18 2016-10-10 100302257 ENSG00000265496 OTTHUMG00000179691 uc060pbf.1 NR_031720 MI0007260 +HGNC:41596 MIR1587 microRNA 1587 non-coding RNA RNA, micro Approved Xp11.4 Xp11.4 hsa-mir-1587 MicroRNAs 476 2011-05-02 2014-11-18 100616251 ENSG00000263972 uc033dzv.1 NR_039763 MI0016905 +HGNC:35389 MIR1825 microRNA 1825 non-coding RNA RNA, micro Approved 20 20 hsa-mir-1825 MIRN1825 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302183 ENSG00000221667 uc032pgc.1 NR_031726 MI0008193 +HGNC:35390 MIR1826 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0008194 +HGNC:35391 MIR1827 microRNA 1827 non-coding RNA RNA, micro Approved 12 12 hsa-mir-1827 MIRN1827 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302217 ENSG00000221476 uc021srd.2 NR_031728 MI0008195 +HGNC:35392 MIR1908 microRNA 1908 non-coding RNA RNA, micro Approved 11 11 hsa-mir-1908 MIRN1908 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302263 ENSG00000222326 uc021qkk.1 NR_031729 MI0008329 +HGNC:35393 MIR1909 microRNA 1909 non-coding RNA RNA, micro Approved 19p13.3 19p13.3 hsa-mir-1909 MIRN1909 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302210 ENSG00000223244 uc021umm.1 NR_031730 615201 MI0008330 +HGNC:35394 MIR1910 microRNA 1910 non-coding RNA RNA, micro Approved 16q24.1 16q24.1 hsa-mir-1910 MIRN1910 MicroRNAs 476 2008-11-03 2008-12-18 2015-01-29 100302261 ENSG00000283416 NR_031731 MI0008331 +HGNC:35395 MIR1911 microRNA 1911 non-coding RNA RNA, micro Approved X X hsa-mir-1911 MIRN1911 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302222 ENSG00000222715 uc022cda.1 NR_031732 MI0008332 +HGNC:35396 MIR1912 microRNA 1912 non-coding RNA RNA, micro Approved X X hsa-mir-1912 MIRN1912 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302144 ENSG00000222321 uc022ccx.1 NR_031733 RGD:4888584 MI0008333 +HGNC:35397 MIR1913 microRNA 1913 non-coding RNA RNA, micro Approved 6 06 hsa-mir-1913 MIRN1913 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-18 100302141 ENSG00000222958 uc021zig.1 NR_031734 MI0008334 +HGNC:35398 MIR1914 microRNA 1914 non-coding RNA RNA, micro Approved 20q13.33 20q13.33 hsa-mir-1914 MIRN1914 MicroRNAs 476 2008-11-03 2008-12-18 2015-01-29 100302137 ENSG00000272045 uc021wgm.1 NR_031735 MI0008335 +HGNC:35399 MIR1915 microRNA 1915 non-coding RNA RNA, micro Approved 10p12.31 10p12.31 hsa-mir-1915 MIRN1915 MicroRNAs 476 2008-11-03 2008-12-18 2014-11-19 100302129 ENSG00000222071 uc021pnw.1 NR_031736 615202 MI0008336 +HGNC:37060 MIR1972-1 microRNA 1972-1 non-coding RNA RNA, micro Approved 15q21.3 15q21.3 hsa-mir-1972 MIR1972 microRNA 1972 MicroRNAs 476 2009-04-06 2010-09-13 2010-09-13 2014-11-19 100302243 ENSG00000238728 uc032dsc.1 NR_036054 MI0009982 +HGNC:38252 MIR1972-2 microRNA 1972-2 non-coding RNA RNA, micro Approved 16 16 hsa-mir-1972-2 MicroRNAs 476 2010-04-30 2014-11-19 100422922 ENSG00000239118 uc021tki.1 NR_036265 MI0015977 +HGNC:37061 MIR1973 microRNA 1973 non-coding RNA RNA, micro Approved 4 04 hsa-mir-1973 MicroRNAs 476 2009-04-06 2014-11-19 100302290 NR_031737 MI0009983 +HGNC:37062 MIR1974 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0009984 +HGNC:37063 MIR1975 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0009985 +HGNC:37064 MIR1976 microRNA 1976 non-coding RNA RNA, micro Approved 1 01 hsa-mir-1976 MicroRNAs 476 2009-04-06 2014-11-19 100302190 ENSG00000238705 uc021ojp.1 NR_031740 MI0009986 +HGNC:37065 MIR1977 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0009987 +HGNC:37066 MIR1978 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 MI0009988 +HGNC:37067 MIR1979 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0009989 +HGNC:37068 MIR2052 microRNA 2052 non-coding RNA RNA, micro Approved 8 08 hsa-mir-2052 MicroRNAs 476 2009-04-06 2014-11-18 100302260 ENSG00000283188 NR_031744 MI0010486 +HGNC:51555 MIR2052HG MIR2052 host gene non-coding RNA RNA, long non-coding Approved 8q21.11-q21.13 08q21.11-q21.13 2015-03-05 2015-03-05 441355 ENSG00000254349 OTTHUMG00000164511 NR_033830 +HGNC:37069 MIR2053 microRNA 2053 non-coding RNA RNA, micro Approved 8 08 hsa-mir-2053 MicroRNAs 476 2009-04-06 2014-11-19 100302225 ENSG00000238399 uc022azy.1 NR_031745 MI0010487 +HGNC:37070 MIR2054 microRNA 2054 non-coding RNA RNA, micro Approved 4q28.1 04q28.1 hsa-mir-2054 MicroRNAs 476 2009-04-06 2014-11-19 100302267 ENSG00000283550 NR_031746 MI0010488 +HGNC:37071 MIR2110 microRNA 2110 non-coding RNA RNA, micro Approved 10 10 hsa-mir-2110 MicroRNAs 476 2009-04-06 2014-11-19 100302224 ENSG00000238742 uc021pyt.1 NR_031747 MI0010629 +HGNC:37058 MIR2113 microRNA 2113 non-coding RNA RNA, micro Approved 6 06 hsa-mir-2113 MicroRNAs 476 2009-04-06 2014-11-19 100302164 ENSG00000238367 uc021zdb.2 NR_031579 MI0003939 +HGNC:37308 MIR2114 microRNA 2114 non-coding RNA RNA, micro Approved X X hsa-mir-2114 MicroRNAs 476 2009-09-18 2014-11-19 100313839 ENSG00000252454 uc022cgr.2 NR_031748 MI0010633 +HGNC:37309 MIR2115 microRNA 2115 non-coding RNA RNA, micro Approved 3 03 hsa-mir-2115 MicroRNAs 476 2009-09-18 2014-11-19 100313840 ENSG00000252466 uc032rmf.1 NR_031749 MI0010634 +HGNC:37310 MIR2116 microRNA 2116 non-coding RNA RNA, micro Approved 15 15 hsa-mir-2116 MicroRNAs 476 2009-09-18 2014-11-18 100313886 ENSG00000253030 uc021smy.1 NR_031750 MI0010635 +HGNC:37311 MIR2117 microRNA 2117 non-coding RNA RNA, micro Approved 17 17 hsa-mir-2117 MicroRNAs 476 2009-09-18 2015-02-03 100313779 ENSG00000278547 uc021txz.1 NR_031751 MI0010636 +HGNC:51999 MIR2117HG MIR2117 host gene non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 2015-10-14 2015-10-14 106660605 ENSG00000267151 OTTHUMG00000180882 DA448302 +HGNC:37313 MIR2276 microRNA 2276 non-coding RNA RNA, micro Approved 13 13 hsa-mir-2276 MicroRNAs 476 2009-09-18 2014-11-19 100313842 ENSG00000252695 uc021rhh.1 NR_031753 MI0011282 +HGNC:37314 MIR2277 microRNA 2277 non-coding RNA RNA, micro Approved 5 05 hsa-mir-2277 MicroRNAs 476 2009-09-18 2014-11-18 100313887 ENSG00000251725 uc021ybl.1 NR_031754 MI0011284 +HGNC:37315 MIR2278 microRNA 2278 non-coding RNA RNA, micro Approved 9 09 hsa-mir-2278 MicroRNAs 476 2009-09-18 2014-11-19 100313780 ENSG00000252153 uc022bkj.1 NR_031755 MI0011285 +HGNC:38328 MIR2355 microRNA 2355 non-coding RNA RNA, micro Approved 2 02 hsa-mir-2355 MicroRNAs 476 2010-04-30 2014-11-19 100423036 ENSG00000253008 uc010ziy.2 NR_036227 MI0015873 +HGNC:41843 MIR2392 microRNA 2392 non-coding RNA RNA, micro Approved 14 14 hsa-mir-2392 MicroRNAs 476 2011-05-02 2014-11-19 100616495 ENSG00000266461 uc021sbt.1 NR_039729 MI0016870 +HGNC:41881 MIR2467 microRNA 2467 non-coding RNA RNA, micro Approved 2 02 hsa-mir-2467 MicroRNAs 476 2011-05-02 2014-11-19 100616360 ENSG00000264292 uc021vzb.1 NR_039948 MI0017432 +HGNC:41532 MIR2681 microRNA 2681 non-coding RNA RNA, micro Approved 13 13 hsa-mir-2681 MicroRNAs 476 2011-05-02 2014-11-18 100616110 ENSG00000265164 uc021rme.1 NR_039603 MI0012062 +HGNC:41688 MIR2682 microRNA 2682 non-coding RNA RNA, micro Approved 1 01 hsa-mir-2682 MicroRNAs 476 2011-05-02 2014-11-18 100616452 uc057ipa.1 NR_039604 MI0012063 +HGNC:38221 MIR2861 microRNA 2861 non-coding RNA RNA, micro Approved 9 09 hsa-mir-2861 MicroRNAs 476 2010-04-30 2014-11-18 100422910 NR_036055 613405 MI0013006 +HGNC:38372 MIR2909 microRNA 2909 non-coding RNA RNA, micro Approved 17 17 hsa-mir-2909 MicroRNAs 476 2010-04-30 2014-11-19 100422969 ENSG00000276326 uc032ghf.1 NR_036056 MI0013083 +HGNC:41652 MIR3064 microRNA 3064 non-coding RNA RNA, micro Approved 17q23.3 17q23.3 hsa-mir-3064 MicroRNAs 476 2011-05-02 2014-11-19 100616387 ENSG00000265695 uc060ivy.1 NR_039891 MI0017375 +HGNC:38234 MIR3065 microRNA 3065 non-coding RNA RNA, micro Approved 17 17 hsa-mir-3065 MicroRNAs 476 2010-04-30 2014-11-18 100422915 ENSG00000211563 NR_036151 MI0014228 +HGNC:38268 MIR3074 microRNA 3074 non-coding RNA RNA, micro Approved 9q22.32 09q22.32 hsa-mir-3074 MicroRNAs 476 2010-04-30 2014-11-19 100422842 ENSG00000207617 uc022bkk.2 NR_036109 MI0014181 +HGNC:38371 MIR3115 microRNA 3115 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3115 MicroRNAs 476 2010-04-30 2014-11-19 100422866 ENSG00000263793 uc021oid.1 NR_036057 MI0014127 +HGNC:38200 MIR3116-1 microRNA 3116-1 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3116-1 MicroRNAs 476 2010-04-30 2014-11-18 100422902 ENSG00000263908 NR_036058 MI0014128 +HGNC:38318 MIR3116-2 microRNA 3116-2 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3116-2 MicroRNAs 476 2010-04-30 2014-11-19 100422946 ENSG00000283690 uc031ucn.1 NR_036059 MI0014129 +HGNC:38385 MIR3117 microRNA 3117 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3117 MicroRNAs 476 2010-04-30 2014-11-19 100422871 ENSG00000264720 NR_036060 MI0014130 +HGNC:38265 MIR3118-1 microRNA 3118-1 non-coding RNA RNA, micro Approved 21q11.2 21q11.2 hsa-mir-3118-1 MicroRNAs 476 2010-04-30 2015-07-30 100423008 ENSG00000266299 uc032puh.1 NR_036061 MI0014131 +HGNC:38324 MIR3118-2 microRNA 3118-2 non-coding RNA RNA, micro Approved 15q11.2 15q11.2 hsa-mir-3118-2 MicroRNAs 476 2010-04-30 2015-07-30 100422949 ENSG00000265322 uc032bub.1 NR_036062 MI0014132 +HGNC:38274 MIR3118-3 microRNA 3118-3 non-coding RNA RNA, micro Approved 15q11.2 15q11.2 hsa-mir-3118-3 MicroRNAs 476 2010-04-30 2015-07-30 100422844 ENSG00000277243 uc032dax.1 NR_036063 MI0014133 +HGNC:38287 MIR3118-4 microRNA 3118-4 non-coding RNA RNA, micro Approved 15 15 hsa-mir-3118-4 MicroRNAs 476 2010-04-30 2014-11-19 100422935 ENSG00000265793 uc032bvb.1 NR_036134 MI0014207 +HGNC:38351 MIR3118-5 entry withdrawn withdrawn withdrawn Entry Withdrawn MicroRNAs 476 2014-11-19 MI0014243 +HGNC:38210 MIR3118-6 entry withdrawn withdrawn withdrawn Entry Withdrawn MicroRNAs 476 2014-11-19 MI0015981 +HGNC:38253 MIR3119-1 microRNA 3119-1 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3119-1 MicroRNAs 476 2010-04-30 2014-11-19 100422839 ENSG00000283340 uc021peq.1 NR_036064 MI0014134 +HGNC:38315 MIR3119-2 microRNA 3119-2 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3119-2 MicroRNAs 476 2010-04-30 2014-11-19 100423010 ENSG00000283340 NR_036065 MI0014135 +HGNC:38295 MIR3120 microRNA 3120 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3120 MicroRNAs 476 2010-04-30 2014-11-18 100422882 ENSG00000283152 NR_036066 614722 MI0014136 +HGNC:38259 MIR3121 microRNA 3121 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3121 MicroRNAs 476 2010-04-30 2014-11-19 100423032 ENSG00000265435 uc021pfq.1 NR_036067 MI0014137 +HGNC:38320 MIR3122 microRNA 3122 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3122 MicroRNAs 476 2010-04-30 2014-11-18 100422947 ENSG00000264358 uc021pis.1 NR_036068 MI0014138 +HGNC:38330 MIR3123 microRNA 3123 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3123 MicroRNAs 476 2010-04-30 2014-11-19 100422856 ENSG00000265831 uc021plg.1 NR_036069 MI0014139 +HGNC:38262 MIR3124 microRNA 3124 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3124 MicroRNAs 476 2010-04-30 2014-11-19 100422879 ENSG00000264500 uc021pmd.1 NR_036070 MI0014140 +HGNC:38219 MIR3125 microRNA 3125 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3125 MicroRNAs 476 2010-04-30 2014-11-18 100422986 ENSG00000264370 uc021vec.1 NR_036072 MI0014142 +HGNC:38225 MIR3126 microRNA 3126 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3126 MicroRNAs 476 2010-04-30 2014-11-19 100423030 ENSG00000266649 uc021viv.1 NR_036073 MI0014143 +HGNC:38269 MIR3127 microRNA 3127 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3127 MicroRNAs 476 2010-04-30 2014-11-19 100422928 ENSG00000264157 NR_036074 MI0014144 +HGNC:38188 MIR3128 microRNA 3128 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3128 MicroRNAs 476 2010-04-30 2014-11-19 100422824 ENSG00000265396 uc021vsu.1 NR_036075 MI0014145 +HGNC:38217 MIR3129 microRNA 3129 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3129 MicroRNAs 476 2010-04-30 2014-11-19 100422908 ENSG00000264725 uc021vty.1 NR_036076 MI0014146 +HGNC:38275 MIR3130-1 microRNA 3130-1 non-coding RNA RNA, micro Approved 2 02 "hsa-mir-3130-1|hsa-mir-3130-3" MIR3130-3 microRNA 3130-3 MicroRNAs 476 2010-04-30 2014-11-19 100422993 ENSG00000283469 uc021vvn.1 NR_036077 MI0014147 +HGNC:38363 MIR3130-2 microRNA 3130-2 non-coding RNA RNA, micro Approved 2 02 "hsa-mir-3130-2|hsa-mir-3130-4" MIR3130-4 microRNA 3130-4 MicroRNAs 476 2010-04-30 2014-11-19 100423002 ENSG00000283469 NR_036078 MI0014148 +HGNC:38347 MIR3131 microRNA 3131 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3131 MicroRNAs 476 2010-04-30 2014-11-19 100422957 ENSG00000264755 uc021vxa.1 NR_036081 MI0014151 +HGNC:38373 MIR3132 microRNA 3132 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3132 MicroRNAs 476 2010-04-30 2014-11-19 100423039 ENSG00000265252 uc021vxc.1 NR_036082 MI0014152 +HGNC:38305 MIR3133 microRNA 3133 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3133 MicroRNAs 476 2010-04-30 2014-11-19 100422942 ENSG00000263752 uc032oxm.1 NR_036083 MI0014153 +HGNC:38254 MIR3134 microRNA 3134 non-coding RNA RNA, micro Approved 3 03 hsa-mir-3134 MicroRNAs 476 2010-04-30 2014-11-18 100422990 ENSG00000264354 uc032rfv.1 NR_036085 MI0014155 +HGNC:38199 MIR3135A microRNA 3135a non-coding RNA RNA, micro Approved 3 03 hsa-mir-3135 MIR3135 microRNA 3135 MicroRNAs 476 2010-04-30 2011-11-14 2011-11-14 2014-11-19 100422901 ENSG00000266745 uc032rgp.1 NR_036086 MI0014156 +HGNC:41783 MIR3135B microRNA 3135b non-coding RNA RNA, micro Approved 6 06 hsa-mir-3135b MicroRNAs 476 2011-05-02 2014-11-19 100616218 ENSG00000263649 uc032wsi.1 NR_039668 MI0016809 +HGNC:38340 MIR3136 microRNA 3136 non-coding RNA RNA, micro Approved 3 03 hsa-mir-3136 MicroRNAs 476 2010-04-30 2014-11-18 100422859 ENSG00000265355 uc021xaj.1 NR_036087 MI0014158 +HGNC:38263 MIR3137 microRNA 3137 non-coding RNA RNA, micro Approved 3 03 hsa-mir-3137 MicroRNAs 476 2010-04-30 2014-11-19 100422926 ENSG00000265333 uc032snz.1 NR_036089 MI0014160 +HGNC:38341 MIR3138 microRNA 3138 non-coding RNA RNA, micro Approved 4 04 hsa-mir-3138 MicroRNAs 476 2010-04-30 2014-11-18 100423011 ENSG00000264931 uc021xlx.1 NR_036090 MI0014161 +HGNC:38201 MIR3139 microRNA 3139 non-coding RNA RNA, micro Approved 4 04 hsa-mir-3139 MicroRNAs 476 2010-04-30 2014-11-18 100423017 ENSG00000265623 uc032tyr.1 NR_036091 MI0014162 +HGNC:38183 MIR3140 microRNA 3140 non-coding RNA RNA, micro Approved 4 04 hsa-mir-3140 MicroRNAs 476 2010-04-30 2014-11-19 100422896 ENSG00000264678 uc021xtd.1 NR_036092 MI0014163 +HGNC:38326 MIR3141 microRNA 3141 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3141 MicroRNAs 476 2010-04-30 2014-11-18 100422950 ENSG00000264760 uc021ygg.1 NR_036094 MI0014165 +HGNC:38297 MIR3142 microRNA 3142 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3142 MicroRNAs 476 2010-04-30 2015-10-08 100422938 ENSG00000265237 uc021yhd.1 NR_036095 MI0014166 +HGNC:51944 MIR3142HG MIR3142 host gene non-coding RNA RNA, long non-coding Approved 5q33.3 05q33.3 2015-10-08 2015-10-08 107075116 ENSG00000253522 OTTHUMG00000163553 NR_132748 +HGNC:38284 MIR3143 microRNA 3143 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3143 MicroRNAs 476 2010-04-30 2014-11-19 100422934 ENSG00000265565 uc021yoz.1 NR_036096 MI0014167 +HGNC:38331 MIR3144 microRNA 3144 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3144 MicroRNAs 476 2010-04-30 2014-11-19 100422951 ENSG00000265725 uc032xkg.1 NR_036098 MI0014169 +HGNC:38327 MIR3145 microRNA 3145 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3145 MicroRNAs 476 2010-04-30 2014-11-18 100423001 ENSG00000266555 uc021zfw.1 NR_036099 MI0014170 +HGNC:38368 MIR3146 microRNA 3146 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3146 MicroRNAs 476 2010-04-30 2014-11-19 100422967 ENSG00000265932 uc022aai.1 NR_036101 MI0014172 +HGNC:38300 MIR3147 microRNA 3147 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3147 MicroRNAs 476 2010-04-30 2014-11-19 100422939 ENSG00000266168 uc022aeq.1 NR_036102 MI0014173 +HGNC:38215 MIR3148 microRNA 3148 non-coding RNA RNA, micro Approved 8 08 hsa-mir-3148 MicroRNAs 476 2010-04-30 2014-11-19 100422876 ENSG00000264788 uc022atl.1 NR_036104 MI0014175 +HGNC:38251 MIR3149 microRNA 3149 non-coding RNA RNA, micro Approved 8 08 hsa-mir-3149 MicroRNAs 476 2010-04-30 2014-11-18 100422921 ENSG00000266712 NR_130460 MI0014176 +HGNC:38362 MIR3150A microRNA 3150a non-coding RNA RNA, micro Approved 8 08 "hsa-mir-3150|hsa-mir-3150a" MIR3150 microRNA 3150 MicroRNAs 476 2010-04-30 2011-05-06 2011-05-06 2014-11-19 100422964 ENSG00000283522 NR_036105 MI0014177 +HGNC:38938 MIR3150B microRNA 3150b non-coding RNA RNA, micro Approved 8 08 hsa-mir-3150b MicroRNAs 476 2010-09-15 2014-11-19 100500907 ENSG00000245080 uc022ayi.1 NR_037484 MI0016426 +HGNC:38266 MIR3151 microRNA 3151 non-coding RNA RNA, micro Approved 8 08 hsa-mir-3151 MicroRNAs 476 2010-04-30 2014-11-19 100422992 ENSG00000265657 uc022azm.1 NR_036106 MI0014178 +HGNC:38379 MIR3152 microRNA 3152 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3152 MicroRNAs 476 2010-04-30 2014-11-18 100422869 ENSG00000264638 uc022bds.1 NR_036107 MI0014179 +HGNC:38289 MIR3153 microRNA 3153 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3153 MicroRNAs 476 2010-04-30 2014-11-19 100422936 ENSG00000265112 uc022bjn.1 NR_036108 MI0014180 +HGNC:38176 MIR3154 microRNA 3154 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3154 MicroRNAs 476 2010-04-30 2014-11-19 100422893 ENSG00000264823 NR_036110 MI0014182 +HGNC:38245 MIR3155A microRNA 3155a non-coding RNA RNA, micro Approved 10 10 hsa-mir-3155 MIR3155 microRNA 3155 MicroRNAs 476 2010-04-30 2011-11-14 2011-11-14 2014-11-19 100422989 ENSG00000263628 uc021pmq.1 NR_036111 MI0014183 +HGNC:50003 MIR3155B microRNA 3155b non-coding RNA RNA, micro Approved 10 10 hsa-mir-3155b MicroRNAs 476 2014-03-24 2014-11-18 100628560 ENSG00000283634 NR_039698 MI0016839 +HGNC:38241 MIR3156-1 microRNA 3156-1 non-coding RNA RNA, micro Approved 10 10 hsa-mir-3156-1 MicroRNAs 476 2010-04-30 2014-11-19 100422988 ENSG00000263476 uc021ppp.1 NR_036112 MI0014184 +HGNC:38213 MIR3156-2 microRNA 3156-2 non-coding RNA RNA, micro Approved 18 18 hsa-mir-3156-2 MicroRNAs 476 2010-04-30 2014-11-18 100422907 ENSG00000265499 uc021uhz.1 NR_036153 MI0014230 +HGNC:38229 MIR3156-3 microRNA 3156-3 non-coding RNA RNA, micro Approved 21 21 hsa-mir-3156-3 MicroRNAs 476 2010-04-30 2014-11-19 100423018 ENSG00000266211 uc021whb.1 NR_036164 MI0014242 +HGNC:38172 MIR3157 microRNA 3157 non-coding RNA RNA, micro Approved 10 10 hsa-mir-3157 MicroRNAs 476 2010-04-30 2014-11-18 100422892 ENSG00000266407 uc021pwn.1 NR_036113 MI0014185 +HGNC:38196 MIR3158-1 microRNA 3158-1 non-coding RNA RNA, micro Approved 10 10 hsa-mir-3158-1 MicroRNAs 476 2010-04-30 2014-11-19 100422900 ENSG00000263436 NR_036114 MI0014186 +HGNC:38279 MIR3158-2 microRNA 3158-2 non-coding RNA RNA, micro Approved 10 10 hsa-mir-3158-2 MicroRNAs 476 2010-04-30 2014-11-18 100423033 ENSG00000263436 uc021pxe.1 NR_036115 MI0014187 +HGNC:38181 MIR3159 microRNA 3159 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3159 MicroRNAs 476 2010-04-30 2014-11-18 100423016 ENSG00000264603 uc031xhd.1 NR_036116 MI0014188 +HGNC:38197 MIR3160-1 microRNA 3160-1 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3160-1 MicroRNAs 476 2010-04-30 2014-11-19 100422827 ENSG00000265014 NR_036117 MI0014189 +HGNC:38192 MIR3160-2 microRNA 3160-2 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3160-2 MicroRNAs 476 2010-04-30 2014-11-19 100422825 ENSG00000283497 uc021qin.1 NR_036118 MI0014190 +HGNC:38285 MIR3161 microRNA 3161 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3161 MicroRNAs 476 2010-04-30 2014-11-19 100423000 ENSG00000263693 uc031xol.1 NR_036119 MI0014191 +HGNC:38271 MIR3162 microRNA 3162 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3162 MicroRNAs 476 2010-04-30 2014-11-19 100422880 ENSG00000264559 uc021qjy.1 NR_036120 MI0014192 +HGNC:38209 MIR3163 microRNA 3163 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3163 MicroRNAs 476 2010-04-30 2014-11-19 100423029 ENSG00000266423 uc031xso.1 NR_036121 MI0014193 +HGNC:38288 MIR3164 microRNA 3164 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3164 MicroRNAs 476 2010-04-30 2014-11-19 100422846 ENSG00000265539 uc031xtr.1 NR_036122 MI0014194 +HGNC:38335 MIR3165 microRNA 3165 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3165 MicroRNAs 476 2010-04-30 2014-11-19 100422953 ENSG00000263742 uc021qmx.1 NR_036123 MI0014195 +HGNC:38386 MIR3166 microRNA 3166 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3166 MicroRNAs 476 2010-04-30 2014-11-18 100423040 ENSG00000266581 uc031xzp.1 NR_036124 MI0014196 +HGNC:38242 MIR3167 microRNA 3167 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3167 MicroRNAs 476 2010-04-30 2014-11-19 100422918 ENSG00000266215 uc021qrz.1 NR_036126 MI0014198 +HGNC:38249 MIR3168 microRNA 3168 non-coding RNA RNA, micro Approved 13 13 hsa-mir-3168 MicroRNAs 476 2010-04-30 2014-11-19 100422878 ENSG00000264226 uc032adc.1 NR_036127 MI0014199 +HGNC:38380 MIR3169 microRNA 3169 non-coding RNA RNA, micro Approved 13 13 hsa-mir-3169 MicroRNAs 476 2010-04-30 2014-11-19 100422973 ENSG00000266663 uc021rkg.1 NR_036128 MI0014200 +HGNC:38282 MIR3170 microRNA 3170 non-coding RNA RNA, micro Approved 13 13 hsa-mir-3170 MicroRNAs 476 2010-04-30 2014-11-19 100422881 ENSG00000263399 uc021rlt.1 NR_036129 MI0014201 +HGNC:38216 MIR3171 microRNA 3171 non-coding RNA RNA, micro Approved 14 14 hsa-mir-3171 MicroRNAs 476 2010-04-30 2015-02-09 100422830 ENSG00000264657 uc059ajm.1 NR_130461 MI0014202 +HGNC:38177 MIR3172 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0014203 +HGNC:38174 MIR3173 microRNA 3173 non-coding RNA RNA, micro Approved 14 14 hsa-mir-3173 MicroRNAs 476 2010-04-30 2014-11-19 100422981 ENSG00000264607 uc021sbe.1 NR_036131 MI0014204 +HGNC:38264 MIR3174 microRNA 3174 non-coding RNA RNA, micro Approved 15 15 hsa-mir-3174 MicroRNAs 476 2010-04-30 2014-11-19 100422841 ENSG00000265871 uc032cpa.1 NR_036135 MI0014208 +HGNC:38299 MIR3175 microRNA 3175 non-coding RNA RNA, micro Approved 15 15 hsa-mir-3175 MicroRNAs 476 2010-04-30 2014-11-19 100422995 uc021svr.1 NR_036136 MI0014209 +HGNC:38345 MIR3176 microRNA 3176 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3176 MicroRNAs 476 2010-04-30 2014-11-19 100423037 ENSG00000266235 uc021szr.1 NR_036137 MI0014210 +HGNC:38364 MIR3177 microRNA 3177 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3177 MicroRNAs 476 2010-04-30 2014-11-19 100423012 ENSG00000265820 uc021tai.1 NR_036138 MI0014211 +HGNC:38381 MIR3178 microRNA 3178 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3178 MicroRNAs 476 2010-04-30 2014-11-19 100422974 ENSG00000266232 uc021taw.1 NR_036139 MI0014212 +HGNC:38353 MIR3179-1 microRNA 3179-1 non-coding RNA RNA, micro Approved 16p13.11 16p13.11 hsa-mir-3179-1 MicroRNAs 476 2010-04-30 2016-10-10 100422960 ENSG00000257264 OTTHUMG00000170530 uc059rcf.1 NR_036140 MI0014213 +HGNC:38325 MIR3179-2 microRNA 3179-2 non-coding RNA RNA, micro Approved 16p13.11 16p13.11 hsa-mir-3179-2 MicroRNAs 476 2010-04-30 2015-02-03 100422886 ENSG00000257381 uc021tdv.1 NR_036143 MI0014216 +HGNC:38214 MIR3179-3 microRNA 3179-3 non-coding RNA RNA, micro Approved 16p12.3 16p12.3 hsa-mir-3179-3 MicroRNAs 476 2010-04-30 2014-11-19 100423006 ENSG00000266454 OTTHUMG00000170523 uc059rje.1 NR_036145 MI0014221 +HGNC:50838 MIR3179-4 microRNA 3179-4 non-coding RNA RNA, micro Approved 16 16 MicroRNAs 476 2014-06-26 2015-02-09 103504729 ENSG00000277014 NR_128709 MI0031510 +HGNC:38382 MIR3180-1 microRNA 3180-1 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3180-1 MicroRNAs 476 2010-04-30 2014-11-19 100422870 OTTHUMG00000170531 uc059rcg.1 NR_036141 MI0014214 +HGNC:38343 MIR3180-2 microRNA 3180-2 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3180-2 MicroRNAs 476 2010-04-30 2014-11-19 100422956 OTTHUMG00000170527 uc059rhi.1 NR_036142 MI0014215 +HGNC:38239 MIR3180-3 microRNA 3180-3 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3180-3 MicroRNAs 476 2010-04-30 2014-11-18 100422836 OTTHUMG00000170522 uc059rjd.1 NR_036144 MI0014217 +HGNC:38920 MIR3180-4 microRNA 3180-4 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3180-4 MicroRNAs 476 2010-09-15 2014-11-19 100500852 OTTHUMG00000170535 uc059rdu.1 NR_037466 MI0016408 +HGNC:38969 MIR3180-5 microRNA 3180-5 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3180-5 MicroRNAs 476 2010-09-15 2014-11-19 100500916 ENSG00000264397 uc021tar.1 NR_037467 MI0016409 +HGNC:38378 MIR3181 microRNA 3181 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3181 MicroRNAs 476 2010-04-30 2014-11-19 100422972 ENSG00000264947 uc059uby.1 NR_130462 MI0014223 +HGNC:38317 MIR3182 microRNA 3182 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3182 MicroRNAs 476 2010-04-30 2014-11-19 100422853 ENSG00000263785 uc021tlx.1 NR_036147 MI0014224 +HGNC:38237 MIR3183 microRNA 3183 non-coding RNA RNA, micro Approved 17 17 hsa-mir-3183 MicroRNAs 476 2010-04-30 2014-11-19 100422835 ENSG00000264429 uc021tnb.1 NR_036148 MI0014225 +HGNC:38182 MIR3184 microRNA 3184 non-coding RNA RNA, micro Approved 17 17 hsa-mir-3184 MicroRNAs 476 2010-04-30 2014-11-19 100423003 ENSG00000266919 OTTHUMG00000179921 uc021tub.2 NR_036149 MI0014226 +HGNC:38391 MIR3185 microRNA 3185 non-coding RNA RNA, micro Approved 17 17 hsa-mir-3185 MicroRNAs 476 2010-04-30 2014-11-19 100422978 ENSG00000263602 uc021tzl.1 NR_036150 MI0014227 +HGNC:38311 MIR3186 microRNA 3186 non-coding RNA RNA, micro Approved 17 17 hsa-mir-3186 MicroRNAs 476 2010-04-30 2014-11-19 100422944 ENSG00000266189 uc021ufa.1 NR_036152 MI0014229 +HGNC:38319 MIR3187 microRNA 3187 non-coding RNA RNA, micro Approved 19 19 hsa-mir-3187 MicroRNAs 476 2010-04-30 2014-11-19 100422854 ENSG00000263414 uc021uma.1 NR_036154 MI0014231 +HGNC:38226 MIR3188 microRNA 3188 non-coding RNA RNA, micro Approved 19 19 hsa-mir-3188 MicroRNAs 476 2010-04-30 2014-11-18 100422833 ENSG00000267959 uc021uqm.1 NR_036155 MI0014232 +HGNC:38307 MIR3189 microRNA 3189 non-coding RNA RNA, micro Approved 19 19 hsa-mir-3189 MicroRNAs 476 2010-04-30 2014-11-18 100422943 ENSG00000264175 uc021uqo.1 NR_036156 MI0014233 +HGNC:38190 MIR3190 microRNA 3190 non-coding RNA RNA, micro Approved 19 19 hsa-mir-3190 MicroRNAs 476 2010-04-30 2014-11-19 100422899 ENSG00000265134 uc021uwk.1 NR_036158 MI0014235 +HGNC:38222 MIR3191 microRNA 3191 non-coding RNA RNA, micro Approved 19 19 hsa-mir-3191 MicroRNAs 476 2010-04-30 2014-11-18 100422832 NR_036159 MI0014236 +HGNC:38202 MIR3192 microRNA 3192 non-coding RNA RNA, micro Approved 20 20 hsa-mir-3192 MicroRNAs 476 2010-04-30 2014-11-19 100422875 ENSG00000265137 NR_036160 MI0014237 +HGNC:38204 MIR3193 microRNA 3193 non-coding RNA RNA, micro Approved 20 20 hsa-mir-3193 MicroRNAs 476 2010-04-30 2014-11-19 100422904 ENSG00000264395 uc021wbt.1 NR_036161 MI0014238 +HGNC:38346 MIR3194 microRNA 3194 non-coding RNA RNA, micro Approved 20 20 hsa-mir-3194 MicroRNAs 476 2010-04-30 2014-11-19 100422889 ENSG00000266761 uc021weu.1 NR_036162 MI0014239 +HGNC:38250 MIR3195 microRNA 3195 non-coding RNA RNA, micro Approved 20 20 hsa-mir-3195 MicroRNAs 476 2010-04-30 2014-11-19 100422838 ENSG00000265306 uc061ygh.1 NR_130463 MI0014240 +HGNC:38198 MIR3196 microRNA 3196 non-coding RNA RNA, micro Approved 20 20 hsa-mir-3196 MicroRNAs 476 2010-04-30 2014-11-18 100423014 ENSG00000266463 uc021wga.1 NR_036163 MI0014241 +HGNC:38366 MIR3197 microRNA 3197 non-coding RNA RNA, micro Approved 21 21 hsa-mir-3197 MicroRNAs 476 2010-04-30 2014-11-19 100423023 ENSG00000263681 uc021wjm.1 NR_036167 MI0014245 +HGNC:38236 MIR3198-1 microRNA 3198-1 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3198-1 MIR3198 microRNA 3198 MicroRNAs 476 2010-04-30 2011-05-06 2011-05-06 2014-11-19 100423025 ENSG00000264757 uc021wkq.1 NR_036168 MI0014246 +HGNC:41766 MIR3198-2 microRNA 3198-2 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3198-2 MicroRNAs 476 2011-05-02 2014-11-19 100616400 uc021qyo.1 NR_039851 MI0017335 +HGNC:38294 MIR3199-1 microRNA 3199-1 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3199-1 MicroRNAs 476 2010-04-30 2014-11-19 100423034 ENSG00000264073 uc021wnm.1 NR_036169 MI0014247 +HGNC:38205 MIR3199-2 microRNA 3199-2 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3199-2 MicroRNAs 476 2010-04-30 2014-11-19 100422998 ENSG00000283225 NR_036170 MI0014248 +HGNC:38227 MIR3200 microRNA 3200 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3200 MicroRNAs 476 2010-04-30 2014-11-19 100422912 ENSG00000264661 NR_036171 MI0014249 +HGNC:38235 MIR3201 microRNA 3201 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3201 MicroRNAs 476 2010-04-30 2014-11-18 100422916 ENSG00000266508 uc021wrs.1 NR_036172 MI0014250 +HGNC:38224 MIR3202-1 microRNA 3202-1 non-coding RNA RNA, micro Approved X X hsa-mir-3202-1 MicroRNAs 476 2010-04-30 2014-11-18 100422987 ENSG00000265176 NR_036174 MI0014252 +HGNC:38228 MIR3202-2 microRNA 3202-2 non-coding RNA RNA, micro Approved X X hsa-mir-3202-2 MicroRNAs 476 2010-04-30 2014-11-19 100422877 ENSG00000283694 uc022cia.1 NR_036175 MI0014253 +HGNC:41564 MIR3529 microRNA 3529 non-coding RNA RNA, micro Approved 15 15 hsa-mir-3529 MicroRNAs 476 2011-05-02 2014-11-19 100616238 ENSG00000283484 NR_039867 MI0017351 +HGNC:41875 MIR3591 microRNA 3591 non-coding RNA RNA, micro Approved 18 18 hsa-mir-3591 MicroRNAs 476 2011-05-02 2014-11-19 100616357 NR_039899 MI0017383 +HGNC:38922 MIR3605 microRNA 3605 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3605 MicroRNAs 476 2010-09-15 2014-11-19 100500853 NR_037400 MI0015995 +HGNC:38881 MIR3606 microRNA 3606 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3606 MicroRNAs 476 2010-09-15 2014-11-19 100500837 NR_037401 MI0015996 +HGNC:38956 MIR3609 microRNA 3609 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3609 MicroRNAs 476 2010-09-15 2014-11-19 100500819 ENSG00000266019 uc022ahx.1 NR_037403 MI0015999 +HGNC:38942 MIR3610 microRNA 3610 non-coding RNA RNA, micro Approved 8 08 hsa-mir-3610 MicroRNAs 476 2010-09-15 2014-11-19 100500914 uc022azz.1 NR_037404 MI0016000 +HGNC:38914 MIR3611 microRNA 3611 non-coding RNA RNA, micro Approved 10 10 hsa-mir-3611 MicroRNAs 476 2010-09-15 2014-11-18 100500890 ENSG00000266228 uc031wcn.1 NR_037405 MI0016001 +HGNC:38951 MIR3612 microRNA 3612 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3612 MicroRNAs 476 2010-09-15 2014-11-19 100500817 ENSG00000265635 uc021rgo.1 NR_037406 MI0016002 +HGNC:38964 MIR3613 microRNA 3613 non-coding RNA RNA, micro Approved 13 13 hsa-mir-3613 MicroRNAs 476 2010-09-15 2014-11-19 100500908 ENSG00000264864 uc021rjp.1 NR_037407 MI0016003 +HGNC:38995 MIR3614 microRNA 3614 non-coding RNA RNA, micro Approved 17 17 hsa-mir-3614 MicroRNAs 476 2010-09-15 2014-11-19 100500827 uc021uaj.1 NR_037408 MI0016004 +HGNC:38905 MIR3615 microRNA 3615 non-coding RNA RNA, micro Approved 17 17 hsa-mir-3615 MicroRNAs 476 2010-09-15 2014-11-19 100500847 uc021ucr.1 NR_037409 MI0016005 +HGNC:38943 MIR3616 microRNA 3616 non-coding RNA RNA, micro Approved 20 20 hsa-mir-3616 MicroRNAs 476 2010-09-15 2014-11-19 100500814 ENSG00000264901 uc021weq.1 NR_037410 MI0016006 +HGNC:38977 MIR3617 microRNA 3617 non-coding RNA RNA, micro Approved 20 20 hsa-mir-3617 MicroRNAs 476 2010-09-15 2014-11-19 100500897 ENSG00000266071 uc032plc.1 NR_037411 MI0016007 +HGNC:38937 MIR3618 microRNA 3618 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3618 MicroRNAs 476 2010-09-15 2014-11-19 100500860 uc021wlo.1 NR_037412 MI0016008 +HGNC:38998 MIR3619 microRNA 3619 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3619 MicroRNAs 476 2010-09-15 2014-11-19 100500828 ENSG00000266533 uc021wrm.1 NR_037413 MI0016009 +HGNC:38917 MIR3620 microRNA 3620 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3620 MicroRNAs 476 2010-09-15 2014-11-19 100500810 uc021pkd.1 NR_037415 MI0016011 +HGNC:38930 MIR3621 microRNA 3621 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3621 MicroRNAs 476 2010-09-15 2014-11-19 100500811 ENSG00000263697 uc022bqc.1 NR_037416 MI0016012 +HGNC:38934 MIR3622A microRNA 3622a non-coding RNA RNA, micro Approved 8 08 hsa-mir-3622a MicroRNAs 476 2010-09-15 2014-11-19 100500858 ENSG00000279302 NR_037417 MI0016013 +HGNC:38961 MIR3622B microRNA 3622b non-coding RNA RNA, micro Approved 8 08 hsa-mir-3622b MicroRNAs 476 2010-09-15 2014-11-19 100500871 ENSG00000265075 uc022atf.1 NR_037418 MI0016014 +HGNC:38935 MIR3646 microRNA 3646 non-coding RNA RNA, micro Approved 20 20 hsa-mir-3646 MicroRNAs 476 2010-09-15 2014-11-19 100500813 ENSG00000266151 uc021wed.1 NR_037419 MI0016046 +HGNC:38941 MIR3648-1 microRNA 3648-1 non-coding RNA RNA, micro Approved 21 21 hsa-mir-3648 MIR3648 microRNA 3648 MicroRNAs 476 2010-09-15 2014-06-26 2014-06-26 2014-11-19 100500862 ENSG00000275708 NR_037421 MI0016048 +HGNC:50843 MIR3648-2 microRNA 3648-2 non-coding RNA RNA, micro Approved 21 21 MicroRNAs 476 2014-06-26 2014-06-26 103504731 ENSG00000264462 NR_128711 MI0031512 +HGNC:38948 MIR3649 microRNA 3649 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3649 MicroRNAs 476 2010-09-15 2014-11-19 100500816 ENSG00000266043 uc021qsw.1 NR_037422 MI0016049 +HGNC:38981 MIR3650 microRNA 3650 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3650 MicroRNAs 476 2010-09-15 2014-11-19 100500824 ENSG00000265304 uc021xxp.1 NR_037423 MI0016050 +HGNC:38897 MIR3651 microRNA 3651 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3651 MicroRNAs 476 2010-09-15 2014-11-19 100500918 ENSG00000281156 uc010mqv.4 NR_037424 MI0016051 +HGNC:38894 MIR3652 microRNA 3652 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3652 MicroRNAs 476 2010-09-15 2014-11-19 100500842 uc021rcv.1 NR_037425 MI0016052 +HGNC:38971 MIR3653 microRNA 3653 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3653 MicroRNAs 476 2010-09-15 2014-11-19 100500833 ENSG00000280968 uc010gvn.2 NR_037426 MI0016053 +HGNC:38896 MIR3654 microRNA 3654 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3654 MicroRNAs 476 2010-09-15 2014-11-19 100500804 NR_037427 MIR3654 MI0016054 +HGNC:38960 MIR3655 microRNA 3655 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3655 MicroRNAs 476 2010-09-15 2014-11-19 100500820 uc063hxg.1 NR_037428 MI0016055 +HGNC:38889 MIR3656 microRNA 3656 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3656 MicroRNAs 476 2010-09-15 2014-11-19 100500840 uc021qri.1 NR_037429 MI0016056 +HGNC:38906 MIR3657 microRNA 3657 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3657 MicroRNAs 476 2010-09-15 2014-11-19 100500889 ENSG00000266370 uc031znp.1 NR_037430 MI0016057 +HGNC:38963 MIR3658 microRNA 3658 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3658 MicroRNAs 476 2010-09-15 2014-11-18 100500832 NR_037431 MI0016058 +HGNC:38882 MIR3659 microRNA 3659 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3659 MicroRNAs 476 2010-09-15 2014-11-19 100500801 ENSG00000265596 uc021olo.1 NR_037432 MI0016060 +HGNC:38985 MIR3660 microRNA 3660 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3660 MicroRNAs 476 2010-09-15 2014-11-19 100500825 ENSG00000264342 uc021ybi.2 NR_037433 MI0016061 +HGNC:38892 MIR3661 microRNA 3661 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3661 MicroRNAs 476 2010-09-15 2014-11-19 100500905 ENSG00000266751 uc021ydo.1 NR_037434 MI0016062 +HGNC:38983 MIR3662 microRNA 3662 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3662 MicroRNAs 476 2010-09-15 2014-11-19 100500880 ENSG00000283409 NR_037435 MI0016063 +HGNC:38958 MIR3663 microRNA 3663 non-coding RNA RNA, micro Approved 10q25.3 10q25.3 hsa-mir-3663 MicroRNAs 476 2010-09-15 2014-11-19 100500893 ENSG00000266782 uc021pzl.1 NR_037436 MI0016064 +HGNC:50676 MIR3663HG MIR3663 host gene non-coding RNA RNA, long non-coding Approved 10q25.3 10q25.3 MIR3663 host gene (non-protein coding) 2014-06-05 2015-02-20 2015-02-20 101927704 ENSG00000234474 OTTHUMG00000019116 BC039338 NR_121650 +HGNC:38899 MIR3664 microRNA 3664 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3664 MicroRNAs 476 2010-09-15 2014-11-19 100500844 ENSG00000263744 uc021qms.1 NR_037437 MI0016065 +HGNC:38939 MIR3665 microRNA 3665 non-coding RNA RNA, micro Approved 13 13 hsa-mir-3665 MicroRNAs 476 2010-09-15 2014-11-19 100500861 ENSG00000266325 uc021rkv.1 NR_037438 MI0016066 +HGNC:38940 MIR3666 microRNA 3666 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3666 MicroRNAs 476 2010-09-15 2014-11-19 100500896 ENSG00000272230 uc022ake.1 NR_037439 MI0016067 +HGNC:38990 MIR3667 microRNA 3667 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3667 MicroRNAs 476 2010-09-15 2014-11-19 100500882 ENSG00000264139 uc032qro.1 NR_037440 MI0016068 +HGNC:38982 MIR3668 microRNA 3668 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3668 MicroRNAs 476 2010-09-15 2014-11-18 100500879 ENSG00000263514 uc021zgd.1 NR_037441 MI0016069 +HGNC:38968 MIR3669 entry withdrawn withdrawn withdrawn Entry Withdrawn MicroRNAs 476 2014-11-19 MI0016070 +HGNC:38997 MIR3670-1 microRNA 3670-1 non-coding RNA RNA, micro Approved 16p13.11 16p13.11 hsa-mir-3670 MIR3670 microRNA 3670 MicroRNAs 476 2010-09-15 2011-11-14 2011-11-14 2014-11-18 100500910 ENSG00000263918 uc032dry.1 NR_037442 MI0016071 +HGNC:43460 MIR3670-2 microRNA 3670-2 non-coding RNA RNA, micro Approved 16p13.11 16p13.11 hsa-mir-3670-2 2011-11-14 2013-05-13 100846994 ENSG00000264722 uc032dsm.1 NR_049832 MI0019112 +HGNC:50829 MIR3670-3 microRNA 3670-3 non-coding RNA RNA, micro Approved 16 16 MicroRNAs 476 2014-06-26 2014-06-26 103504726 ENSG00000265776 NR_128712 MI0031513 +HGNC:50828 MIR3670-4 microRNA 3670-4 non-coding RNA RNA, micro Approved 16 16 MicroRNAs 476 2014-06-26 2014-06-26 103504740 ENSG00000274025 NR_128713 MI0031514 +HGNC:38925 MIR3671 microRNA 3671 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3671 MicroRNAs 476 2010-09-15 2014-11-19 100500854 ENSG00000265996 uc021ook.1 NR_037443 MI0016072 +HGNC:38957 MIR3672 microRNA 3672 non-coding RNA RNA, micro Approved X X hsa-mir-3672 MicroRNAs 476 2010-09-15 2014-11-19 100500869 ENSG00000265456 uc033ete.1 NR_037444 MI0016073 +HGNC:38908 MIR3673 entry withdrawn withdrawn withdrawn Entry Withdrawn MicroRNAs 476 2014-11-19 MI0016074 +HGNC:38915 MIR3674 microRNA 3674 non-coding RNA RNA, micro Approved 8 08 hsa-mir-3674 MicroRNAs 476 2010-09-15 2014-11-19 100500912 NR_037445 MI0016075 +HGNC:38973 MIR3675 microRNA 3675 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3675 MicroRNAs 476 2010-09-15 2014-11-19 100500876 ENSG00000263811 uc021ohc.1 NR_037446 MI0016076 +HGNC:38927 MIR3676 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 MI0016077 +HGNC:38932 MIR3677 microRNA 3677 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3677 MicroRNAs 476 2010-09-15 2014-11-19 100500812 ENSG00000266643 uc021tas.1 NR_037448 MI0016078 +HGNC:38891 MIR3678 microRNA 3678 non-coding RNA RNA, micro Approved 17 17 hsa-mir-3678 MicroRNAs 476 2010-09-15 2014-11-19 100500841 ENSG00000264511 uc021ucz.1 NR_037449 MI0016079 +HGNC:38979 MIR3679 microRNA 3679 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3679 MicroRNAs 476 2010-09-15 2014-11-19 100500878 ENSG00000263813 uc021vpy.1 NR_037450 MI0016080 +HGNC:38989 MIR3680-1 microRNA 3680-1 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3680 MIR3680 microRNA 3680 MicroRNAs 476 2010-09-15 2011-11-14 2011-11-14 2014-11-19 100500917 ENSG00000265462 uc032duc.1 NR_037451 MI0016081 +HGNC:43472 MIR3680-2 microRNA 3680-2 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3680-2 2011-11-14 2011-11-14 100847041 ENSG00000266758 uc032dwx.1 NR_049833 MI0019113 +HGNC:38994 MIR3681 microRNA 3681 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3681 MicroRNAs 476 2010-09-15 2014-11-19 100500884 ENSG00000264089 uc032nev.1 NR_037452 MI0016082 +HGNC:52001 MIR3681HG MIR3681 host gene non-coding RNA RNA, long non-coding Approved 2p24.3 02p24.3 2015-10-14 2015-10-14 100506457 ENSG00000224184 OTTHUMG00000151709 NR_110196 +HGNC:38916 MIR3682 microRNA 3682 non-coding RNA RNA, micro Approved 2 02 hsa-mir-3682 MicroRNAs 476 2010-09-15 2014-11-19 100500850 ENSG00000265452 uc021vhm.1 NR_037453 MI0016083 +HGNC:38999 MIR3683 microRNA 3683 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3683 MicroRNAs 476 2010-09-15 2014-11-19 100500886 ENSG00000266287 uc032zdj.1 NR_037454 MI0016084 +HGNC:38950 MIR3684 microRNA 3684 non-coding RNA RNA, micro Approved 4 04 hsa-mir-3684 MicroRNAs 476 2010-09-15 2014-11-19 100500867 ENSG00000265213 uc021xqh.1 NR_037455 MI0016085 +HGNC:38886 MIR3685 microRNA 3685 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3685 MicroRNAs 476 2010-09-15 2014-11-18 100500802 ENSG00000265917 uc001teb.3 NR_037456 MI0016086 +HGNC:38887 MIR3686 microRNA 3686 non-coding RNA RNA, micro Approved 8 08 hsa-mir-3686 MicroRNAs 476 2010-09-15 2014-11-19 100500839 ENSG00000263763 uc033bzi.1 NR_037457 MI0016087 +HGNC:38946 MIR3687-1 microRNA 3687-1 non-coding RNA RNA, micro Approved 21 21 hsa-mir-3687 MIR3687 microRNA 3687 MicroRNAs 476 2010-09-15 2014-06-26 2014-06-26 2014-11-19 100500815 ENSG00000277437 NR_037458 MI0016088 +HGNC:50835 MIR3687-2 microRNA 3687-2 non-coding RNA RNA, micro Approved 21 21 MicroRNAs 476 2014-06-26 2014-06-26 103504728 ENSG00000264063 NR_128714 MI0031515 +HGNC:38986 MIR3688-1 microRNA 3688-1 non-coding RNA RNA, micro Approved 4 04 "hsa-mir-3688|hsa-mir-3688-1" MIR3688 microRNA 3688 MicroRNAs 476 2010-09-15 2011-05-06 2011-05-06 2014-11-18 100500881 ENSG00000264105 NR_037459 MI0016089 +HGNC:41735 MIR3688-2 microRNA 3688-2 non-coding RNA RNA, micro Approved 4 04 hsa-mir-3688-2 MicroRNAs 476 2011-05-02 2014-11-19 100616303 ENSG00000283379 uc021xtt.1 NR_039963 MI0017447 +HGNC:38904 MIR3689A microRNA 3689a non-coding RNA RNA, micro Approved 9 09 hsa-mir-3689a MicroRNAs 476 2010-09-15 2014-11-19 100500846 ENSG00000265872 uc064wxq.1 NR_037460 MI0016090 +HGNC:38924 MIR3689B microRNA 3689b non-coding RNA RNA, micro Approved 9 09 hsa-mir-3689b MicroRNAs 476 2010-09-15 2014-11-18 100500906 ENSG00000264163 uc022bpe.1 NR_037469 MI0016411 +HGNC:41816 MIR3689C microRNA 3689c non-coding RNA RNA, micro Approved 9 09 hsa-mir-3689c MicroRNAs 476 2011-05-02 2014-11-19 100616333 ENSG00000264744 uc022bpc.1 NR_039691 MI0016832 +HGNC:41621 MIR3689D1 microRNA 3689d-1 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3689d-1 MicroRNAs 476 2011-05-02 2014-11-19 100616131 ENSG00000265848 uc022bpd.1 NR_039693 MI0016834 +HGNC:41846 MIR3689D2 microRNA 3689d-2 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3689d-2 MicroRNAs 476 2011-05-02 2014-11-19 100616344 ENSG00000264136 uc022bpf.1 NR_039694 MI0016835 +HGNC:41887 MIR3689E microRNA 3689e non-coding RNA RNA, micro Approved 9 09 hsa-mir-3689e MicroRNAs 476 2011-05-02 2014-11-18 100616460 ENSG00000266827 uc022bpg.1 NR_039695 MI0016836 +HGNC:41702 MIR3689F microRNA 3689f non-coding RNA RNA, micro Approved 9 09 hsa-mir-3689f MicroRNAs 476 2011-05-02 2014-11-18 100616212 ENSG00000266514 uc022bph.1 NR_039696 MI0016837 +HGNC:38967 MIR3690 microRNA 3690 non-coding RNA RNA, micro Approved Xp22.32 and Yp11.3 Xp22.32 and Yp11.3 "hsa-mir-3690|hsa-mir-3690-2" "MIR3690-2|MIR3690-1" "microRNA 3690-2|microRNA 3690-1" "MicroRNAs|Pseudoautosomal region 1" "476|715" 2010-09-15 2014-04-28 2014-04-28 2015-02-27 100500894 ENSG00000265658 uc022cis.1 NR_037461 MI0016091 +HGNC:38909 MIR3691 microRNA 3691 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3691 MicroRNAs 476 2010-09-15 2014-11-19 100500900 ENSG00000265083 uc021ykv.1 NR_037462 MI0016092 +HGNC:38885 MIR3692 microRNA 3692 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3692 MicroRNAs 476 2010-09-15 2014-11-19 100500899 ENSG00000266617 uc021zhk.1 NR_037463 MI0016093 +HGNC:38926 MIR3713 microRNA 3713 non-coding RNA RNA, micro Approved 15 15 hsa-mir-3713 MicroRNAs 476 2010-09-15 2014-11-18 100500855 ENSG00000266449 uc032ckl.1 NR_037464 MI0016134 +HGNC:38928 MIR3714 microRNA 3714 non-coding RNA RNA, micro Approved 3 03 hsa-mir-3714 MicroRNAs 476 2010-09-15 2014-11-19 100500913 uc021wts.1 NR_037465 MI0016135 +HGNC:38988 MIR3907 microRNA 3907 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3907 MicroRNAs 476 2010-09-15 2014-11-19 100500835 ENSG00000265810 uc022aqe.1 NR_037468 MI0016410 +HGNC:38991 MIR3908 microRNA 3908 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3908 MicroRNAs 476 2010-09-15 2014-11-19 100500909 ENSG00000266655 uc021rfx.1 NR_037470 MI0016412 +HGNC:38987 MIR3909 microRNA 3909 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3909 MicroRNAs 476 2010-09-15 2014-11-19 100500826 ENSG00000266320 uc021woj.1 NR_037471 MI0016413 +HGNC:38966 MIR3910-1 microRNA 3910-1 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3910-1 MicroRNAs 476 2010-09-15 2014-11-19 100500821 ENSG00000266855 uc022bju.1 NR_037472 MI0016414 +HGNC:38952 MIR3910-2 microRNA 3910-2 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3910-2 MicroRNAs 476 2010-09-15 2014-11-19 100500902 ENSG00000283351 NR_037489 MI0016431 +HGNC:38962 MIR3911 microRNA 3911 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3911 MicroRNAs 476 2010-09-15 2014-11-19 100500872 ENSG00000279571 uc022bnp.1 NR_037473 MI0016415 +HGNC:38923 MIR3912 microRNA 3912 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3912 MicroRNAs 476 2010-09-15 2014-11-19 100500831 ENSG00000264249 uc021yhq.1 NR_037474 MI0016416 +HGNC:38884 MIR3913-1 microRNA 3913-1 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3913-1 MicroRNAs 476 2010-09-15 2014-11-19 100500903 ENSG00000264405 NR_037475 MI0016417 +HGNC:38953 MIR3913-2 microRNA 3913-2 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3913-2 MicroRNAs 476 2010-09-15 2014-11-19 100500868 ENSG00000283677 uc021ram.1 NR_037476 MI0016418 +HGNC:38993 MIR3914-1 microRNA 3914-1 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3914-1 MicroRNAs 476 2010-09-15 2014-11-19 100500836 ENSG00000265878 NR_037477 MI0016419 +HGNC:38975 MIR3914-2 microRNA 3914-2 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3914-2 MicroRNAs 476 2010-09-15 2014-11-19 100500920 ENSG00000283278 uc022afh.1 NR_037479 MI0016421 +HGNC:38955 MIR3915 microRNA 3915 non-coding RNA RNA, micro Approved X X hsa-mir-3915 MicroRNAs 476 2010-09-15 2014-11-19 100500915 ENSG00000263600 uc033dxk.1 NR_037478 MI0016420 +HGNC:38912 MIR3916 microRNA 3916 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3916 MicroRNAs 476 2010-09-15 2014-11-19 100500849 uc021pma.1 NR_037480 MI0016422 +HGNC:38911 MIR3917 microRNA 3917 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3917 MicroRNAs 476 2010-09-15 2014-11-19 100500808 uc021ojn.1 NR_037481 MI0016423 +HGNC:38919 MIR3918 microRNA 3918 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3918 MicroRNAs 476 2010-09-15 2014-11-19 100500851 ENSG00000265558 uc021zho.1 NR_037482 MI0016424 +HGNC:38890 MIR3919 microRNA 3919 non-coding RNA RNA, micro Approved 3 03 hsa-mir-3919 MicroRNAs 476 2010-09-15 2014-11-19 100500803 ENSG00000263634 uc021xgn.1 NR_037483 MI0016425 +HGNC:38974 MIR3920 microRNA 3920 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3920 MicroRNAs 476 2010-09-15 2014-11-19 100500823 ENSG00000263885 uc021qpe.1 NR_037485 MI0016427 +HGNC:38936 MIR3921 microRNA 3921 non-coding RNA RNA, micro Approved 3 03 hsa-mir-3921 MicroRNAs 476 2010-09-15 2014-11-19 100500859 ENSG00000264897 uc021xbs.1 NR_037486 MI0016428 +HGNC:38895 MIR3922 microRNA 3922 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3922 MicroRNAs 476 2010-09-15 2014-11-19 100500843 ENSG00000264295 uc021rdd.1 NR_037487 MI0016429 +HGNC:38978 MIR3923 microRNA 3923 non-coding RNA RNA, micro Approved 3 03 hsa-mir-3923 MicroRNAs 476 2010-09-15 2014-11-19 100500877 ENSG00000265193 uc032rsd.1 NR_037488 MI0016430 +HGNC:38984 MIR3924 microRNA 3924 non-coding RNA RNA, micro Approved 10 10 hsa-mir-3924 MicroRNAs 476 2010-09-15 2014-11-19 100500834 ENSG00000264747 uc021prb.1 NR_037490 MI0016432 +HGNC:38996 MIR3925 microRNA 3925 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3925 MicroRNAs 476 2010-09-15 2014-11-19 100500885 ENSG00000263894 uc021yza.1 NR_037491 MI0016433 +HGNC:38959 MIR3926-1 microRNA 3926-1 non-coding RNA RNA, micro Approved 8 08 hsa-mir-3926-1 MicroRNAs 476 2010-09-15 2014-11-19 100500870 ENSG00000266206 NR_037492 MI0016434 +HGNC:38883 MIR3926-2 microRNA 3926-2 non-coding RNA RNA, micro Approved 8 08 hsa-mir-3926-2 MicroRNAs 476 2010-09-15 2014-11-19 100500838 ENSG00000283523 uc022asd.1 NR_037495 MI0016437 +HGNC:38901 MIR3927 microRNA 3927 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3927 MicroRNAs 476 2010-09-15 2014-11-19 100500898 ENSG00000263861 uc033dfa.1 NR_037493 MI0016435 +HGNC:38933 MIR3928 microRNA 3928 non-coding RNA RNA, micro Approved 22 22 hsa-mir-3928 MicroRNAs 476 2010-09-15 2014-11-19 100500901 ENSG00000264141 uc021wny.1 NR_037496 MI0016438 +HGNC:38945 MIR3929 microRNA 3929 non-coding RNA RNA, micro Approved 18 18 hsa-mir-3929 MicroRNAs 476 2010-09-15 2014-11-19 100500864 ENSG00000265641 uc032hbv.1 NR_037497 MI0016439 +HGNC:38965 MIR3934 microRNA 3934 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3934 MicroRNAs 476 2010-09-15 2014-11-19 100500873 ENSG00000266509 uc032wsw.1 NR_037498 MI0016590 +HGNC:38918 MIR3935 microRNA 3935 non-coding RNA RNA, micro Approved 16 16 hsa-mir-3935 MicroRNAs 476 2010-09-15 2014-11-19 100500891 ENSG00000265281 uc021tis.1 NR_037499 MI0016591 +HGNC:38947 MIR3936 microRNA 3936 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3936 MicroRNAs 476 2010-09-15 2014-11-19 100500865 ENSG00000263597 uc021ydk.1 NR_037500 MI0016592 +HGNC:38970 MIR3937 microRNA 3937 non-coding RNA RNA, micro Approved X X hsa-mir-3937 MicroRNAs 476 2010-09-15 2014-11-19 100500822 ENSG00000263730 uc033dzt.1 NR_037501 MI0016593 +HGNC:38972 MIR3938 microRNA 3938 non-coding RNA RNA, micro Approved 3 03 hsa-mir-3938 MicroRNAs 476 2010-09-15 2014-11-19 100500875 ENSG00000264013 uc021wzp.1 NR_037502 MI0016594 +HGNC:38931 MIR3939 microRNA 3939 non-coding RNA RNA, micro Approved 6 06 hsa-mir-3939 MicroRNAs 476 2010-09-15 2014-11-19 100500857 ENSG00000265828 uc021zih.1 NR_037504 MI0016596 +HGNC:38893 MIR3940 microRNA 3940 non-coding RNA RNA, micro Approved 19 19 hsa-mir-3940 MicroRNAs 476 2010-09-15 2014-11-19 100500888 uc021unp.1 NR_037505 MI0016597 +HGNC:38949 MIR3941 microRNA 3941 non-coding RNA RNA, micro Approved 10 10 hsa-mir-3941 MicroRNAs 476 2010-09-15 2014-11-19 100500866 ENSG00000265442 uc021qad.1 NR_037506 MI0016598 +HGNC:38976 MIR3942 microRNA 3942 non-coding RNA RNA, micro Approved 15 15 hsa-mir-3942 MicroRNAs 476 2010-09-15 2014-11-19 100500904 ENSG00000265102 uc021siz.1 NR_037507 MI0016599 +HGNC:38888 MIR3943 microRNA 3943 non-coding RNA RNA, micro Approved 7 07 hsa-mir-3943 MicroRNAs 476 2010-09-15 2014-11-19 100500829 ENSG00000264069 uc022acf.2 NR_037508 MI0016600 +HGNC:38898 MIR3944 microRNA 3944 non-coding RNA RNA, micro Approved 10 10 hsa-mir-3944 MicroRNAs 476 2010-09-15 2014-11-19 100500911 ENSG00000265395 uc021qbg.1 NR_037509 MI0016601 +HGNC:38954 MIR3945 microRNA 3945 non-coding RNA RNA, micro Approved 4 04 hsa-mir-3945 MicroRNAs 476 2010-09-15 2014-11-19 100500818 ENSG00000266698 uc021xvg.1 NR_037510 MI0016602 +HGNC:52002 MIR3945HG MIR3945 host gene non-coding RNA RNA, long non-coding Approved 4q35.1 04q35.1 2015-10-14 2015-10-14 731424 ENSG00000251230 OTTHUMG00000160604 NR_037867 +HGNC:41595 MIR3960 microRNA 3960 non-coding RNA RNA, micro Approved 9 09 hsa-mir-3960 MicroRNAs 476 2011-05-02 2014-11-19 100616250 uc064vxi.1 NR_039767 MI0016964 +HGNC:41876 MIR3972 microRNA 3972 non-coding RNA RNA, micro Approved 1 01 hsa-mir-3972 MicroRNAs 476 2011-05-02 2014-11-19 100616188 ENSG00000266634 uc031tre.1 NR_039768 MI0016990 +HGNC:41756 MIR3973 microRNA 3973 non-coding RNA RNA, micro Approved 11 11 hsa-mir-3973 MicroRNAs 476 2011-05-02 2014-11-19 100616311 ENSG00000263389 uc021qga.1 NR_039769 MI0016991 +HGNC:41672 MIR3974 microRNA 3974 non-coding RNA RNA, micro Approved 12 12 hsa-mir-3974 MicroRNAs 476 2011-05-02 2014-11-19 100616279 ENSG00000283665 NR_039770 MI0016992 +HGNC:41613 MIR3975 microRNA 3975 non-coding RNA RNA, micro Approved 18 18 hsa-mir-3975 MicroRNAs 476 2011-05-02 2014-11-19 100616257 ENSG00000283514 NR_039771 MI0016993 +HGNC:41578 MIR3976 microRNA 3976 non-coding RNA RNA, micro Approved 18 18 hsa-mir-3976 MicroRNAs 476 2011-05-02 2014-11-19 100616244 ENSG00000272380 uc021ugp.1 NR_039772 MI0016994 +HGNC:51104 MIR3976HG MIR3976 host gene non-coding RNA RNA, long non-coding Approved 18p11.31 18p11.31 LINC01469 long intergenic non-protein coding RNA 1469 MIR3976 host gene (non-protein coding) 2014-07-29 2015-02-20 2015-02-20 645355 ENSG00000261738 OTTHUMG00000176112 NR_038839 +HGNC:41721 MIR3977 microRNA 3977 non-coding RNA RNA, micro Approved 5 05 hsa-mir-3977 MicroRNAs 476 2011-05-02 2014-11-19 100616297 ENSG00000283359 NR_039773 MI0016995 +HGNC:41630 MIR3978 microRNA 3978 non-coding RNA RNA, micro Approved X X hsa-mir-3978 MicroRNAs 476 2011-05-02 2014-11-19 100616491 ENSG00000265584 uc022ccj.1 NR_039774 MI0016996 +HGNC:38370 MIR4251 microRNA 4251 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4251 MicroRNAs 476 2010-04-30 2014-11-19 100422968 ENSG00000283572 NR_036215 MI0015861 +HGNC:38384 MIR4252 microRNA 4252 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4252 MicroRNAs 476 2010-04-30 2014-11-19 100422975 ENSG00000265392 uc021ofo.1 NR_036218 MI0015864 +HGNC:38231 MIR4253 microRNA 4253 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4253 MicroRNAs 476 2010-04-30 2014-11-19 100422914 ENSG00000264014 uc021oic.1 NR_036214 MI0015860 +HGNC:38193 MIR4254 microRNA 4254 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4254 MicroRNAs 476 2010-04-30 2014-11-19 100423028 ENSG00000266580 uc021okr.1 NR_036216 MI0015862 +HGNC:38187 MIR4255 microRNA 4255 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4255 MicroRNAs 476 2010-04-30 2014-11-19 100422898 ENSG00000264698 uc021oll.1 NR_036217 MI0015863 +HGNC:38388 MIR4256 microRNA 4256 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4256 MicroRNAs 476 2010-04-30 2014-11-19 100422976 ENSG00000283296 NR_036210 MI0015855 +HGNC:38312 MIR4257 microRNA 4257 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4257 MicroRNAs 476 2010-04-30 2014-11-19 100422997 ENSG00000264553 uc021oye.1 NR_036211 MI0015856 +HGNC:38281 MIR4258 microRNA 4258 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4258 MicroRNAs 476 2010-04-30 2014-11-19 100423020 ENSG00000264349 uc021pai.1 NR_036212 MI0015857 +HGNC:38309 MIR4259 microRNA 4259 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4259 MicroRNAs 476 2010-04-30 2014-11-19 100422852 ENSG00000266458 uc057mhz.1 NR_130464 MI0015858 +HGNC:38179 MIR4260 microRNA 4260 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4260 MicroRNAs 476 2010-04-30 2014-11-19 100422894 uc021pil.1 NR_036213 MI0015859 +HGNC:38272 MIR4261 microRNA 4261 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4261 MicroRNAs 476 2010-04-30 2014-11-19 100422929 ENSG00000265418 uc021vdt.1 NR_036222 MI0015868 +HGNC:38308 MIR4262 microRNA 4262 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4262 MicroRNAs 476 2010-04-30 2014-11-19 100422996 ENSG00000265172 uc021vea.1 NR_036226 MI0015872 +HGNC:38365 MIR4263 microRNA 4263 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4263 MicroRNAs 476 2010-04-30 2014-11-19 100422965 ENSG00000265321 uc021vff.1 NR_036230 MI0015876 +HGNC:38338 MIR4264 microRNA 4264 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4264 MicroRNAs 476 2010-04-30 2014-11-19 100422888 ENSG00000266436 uc021vjs.1 NR_036231 MI0015877 +HGNC:38358 MIR4265 microRNA 4265 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4265 MicroRNAs 476 2010-04-30 2014-11-18 100422863 ENSG00000264934 uc021vlw.1 NR_036223 MI0015869 +HGNC:38175 MIR4266 microRNA 4266 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4266 MicroRNAs 476 2010-04-30 2014-11-18 100423027 ENSG00000265965 uc021vlx.1 NR_036224 MI0015870 +HGNC:38286 MIR4267 microRNA 4267 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4267 MicroRNAs 476 2010-04-30 2014-11-19 100422994 ENSG00000265682 uc021vmd.1 NR_036225 MI0015871 +HGNC:38352 MIR4268 microRNA 4268 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4268 MicroRNAs 476 2010-04-30 2014-11-19 100422959 ENSG00000266518 uc021vxd.1 NR_036228 MI0015874 +HGNC:38291 MIR4269 microRNA 4269 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4269 MicroRNAs 476 2010-04-30 2014-11-19 100423043 ENSG00000265215 uc021vza.1 NR_036229 MI0015875 +HGNC:38377 MIR4270 microRNA 4270 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4270 MicroRNAs 476 2010-04-30 2014-11-19 100422868 ENSG00000263573 uc021wto.1 NR_036232 MI0015878 +HGNC:38332 MIR4271 microRNA 4271 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4271 MicroRNAs 476 2010-04-30 2014-11-19 100422952 ENSG00000264633 uc021wxu.1 NR_036233 MI0015879 +HGNC:38303 MIR4272 microRNA 4272 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4272 MicroRNAs 476 2010-04-30 2014-11-19 100422941 ENSG00000283298 NR_036234 MI0015880 +HGNC:38339 MIR4273 microRNA 4273 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4273 MicroRNAs 476 2010-04-30 2014-11-19 100422955 ENSG00000266396 uc021xas.1 NR_036235 MI0015881 +HGNC:38194 MIR4274 microRNA 4274 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4274 MicroRNAs 476 2010-04-30 2014-11-19 100422826 ENSG00000266690 uc021xlh.1 NR_036238 MI0015884 +HGNC:38293 MIR4275 microRNA 4275 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4275 MicroRNAs 476 2010-04-30 2014-11-19 100422937 ENSG00000283275 NR_036237 MI0015883 +HGNC:38232 MIR4276 microRNA 4276 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4276 MicroRNAs 476 2010-04-30 2014-11-19 100423042 ENSG00000265846 uc021xul.1 NR_036236 616274 MI0015882 +HGNC:38367 MIR4277 microRNA 4277 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4277 MicroRNAs 476 2010-04-30 2014-11-18 100422966 ENSG00000263746 uc021xwg.1 NR_036240 MI0015886 +HGNC:38243 MIR4278 microRNA 4278 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4278 MicroRNAs 476 2010-04-30 2014-11-19 100422999 ENSG00000283420 NR_036242 MI0015888 +HGNC:38195 MIR4279 microRNA 4279 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4279 MicroRNAs 476 2010-04-30 2014-11-18 100422874 ENSG00000266243 uc021xxb.1 NR_036241 MI0015887 +HGNC:38334 MIR4280 microRNA 4280 non-coding RNA RNA, micro Approved 5q14.3 05q14.3 hsa-mir-4280 MicroRNAs 476 2010-04-30 2014-11-19 100422887 ENSG00000265919 uc021ybb.1 NR_036243 MI0015889 +HGNC:38357 MIR4281 microRNA 4281 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4281 MicroRNAs 476 2010-04-30 2014-11-18 100422962 ENSG00000266329 uc021yik.1 NR_036239 MI0015885 +HGNC:38189 MIR4282 microRNA 4282 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4282 MicroRNAs 476 2010-04-30 2014-11-18 100423005 ENSG00000266180 uc021zbr.1 NR_036244 MI0015890 +HGNC:38238 MIR4283-1 microRNA 4283-1 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4283-1 MicroRNAs 476 2010-04-30 2014-11-19 100422917 ENSG00000264426 uc022aea.1 NR_036246 MI0015892 +HGNC:38296 MIR4283-2 microRNA 4283-2 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4283-2 MicroRNAs 476 2010-04-30 2014-11-19 100422848 ENSG00000265214 uc022aes.1 NR_036270 MI0015982 +HGNC:38322 MIR4284 microRNA 4284 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4284 MicroRNAs 476 2010-04-30 2014-11-19 100422948 ENSG00000265724 uc022afw.1 NR_036247 MI0015893 +HGNC:38337 MIR4285 microRNA 4285 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4285 MicroRNAs 476 2010-04-30 2014-11-19 100422858 ENSG00000264675 uc033abb.1 NR_036245 MI0015891 +HGNC:38186 MIR4286 microRNA 4286 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4286 MicroRNAs 476 2010-04-30 2014-11-19 100422982 ENSG00000263762 uc033bbz.1 NR_036248 MI0015894 +HGNC:38208 MIR4287 microRNA 4287 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4287 MicroRNAs 476 2010-04-30 2014-11-19 100422828 ENSG00000265847 uc022ath.1 NR_036249 MI0015895 +HGNC:38203 MIR4288 microRNA 4288 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4288 MicroRNAs 476 2010-04-30 2014-11-19 100422903 ENSG00000265251 uc022ati.1 NR_036250 MI0015896 +HGNC:38278 MIR4289 microRNA 4289 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4289 MicroRNAs 476 2010-04-30 2014-11-19 100423015 ENSG00000265873 uc022bjl.1 NR_036252 MI0015898 +HGNC:38360 MIR4290 microRNA 4290 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4290 MicroRNAs 476 2010-04-30 2014-11-18 100422963 ENSG00000263967 uc022bjp.1 NR_036253 MI0015899 +HGNC:27861 MIR4290HG MIR4290 host gene non-coding RNA RNA, long non-coding Approved 9q22.2 09q22.2 2015-10-14 2015-10-14 286370 ENSG00000227555 OTTHUMG00000020191 NR_038882 +HGNC:38267 MIR4291 microRNA 4291 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4291 MicroRNAs 476 2010-04-30 2014-11-19 100422927 ENSG00000265347 uc022bkd.1 NR_036254 MI0015900 +HGNC:38348 MIR4292 microRNA 4292 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4292 MicroRNAs 476 2010-04-30 2014-11-19 100422860 ENSG00000265806 uc022bpu.1 NR_036251 MI0015897 +HGNC:38270 MIR4293 microRNA 4293 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4293 MicroRNAs 476 2010-04-30 2014-11-19 100422843 ENSG00000266321 uc031vxu.1 NR_036181 MI0015826 +HGNC:38180 MIR4294 microRNA 4294 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4294 MicroRNAs 476 2010-04-30 2014-11-18 100422895 ENSG00000264800 uc021ppz.1 NR_036182 MI0015827 +HGNC:38220 MIR4295 microRNA 4295 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4295 MicroRNAs 476 2010-04-30 2014-11-18 100422909 ENSG00000264763 uc021pyf.1 NR_036177 MI0015822 +HGNC:38178 MIR4296 microRNA 4296 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4296 MicroRNAs 476 2010-04-30 2014-11-19 100423041 ENSG00000264572 uc021qan.1 NR_036178 MI0015823 +HGNC:38393 MIR4297 microRNA 4297 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4297 MicroRNAs 476 2010-04-30 2014-11-19 100422873 ENSG00000266676 uc021qaw.1 NR_036179 MI0015824 +HGNC:38313 MIR4298 microRNA 4298 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4298 MicroRNAs 476 2010-04-30 2014-11-18 100423021 ENSG00000264493 uc021qbw.1 NR_036185 MI0015830 +HGNC:38329 MIR4299 microRNA 4299 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4299 MicroRNAs 476 2010-04-30 2014-11-18 100423026 ENSG00000266645 uc021qdv.1 NR_036184 MI0015829 +HGNC:38184 MIR4300 microRNA 4300 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4300 MicroRNAs 476 2010-04-30 2014-11-19 100422823 ENSG00000264110 uc021qod.1 NR_036186 MI0015831 +HGNC:52003 MIR4300HG MIR4300 host gene non-coding RNA RNA, long non-coding Approved 11q14.1 11q14.1 2015-10-14 2015-10-14 101928989 ENSG00000245832 OTTHUMG00000166867 NR_120571 +HGNC:38323 MIR4301 microRNA 4301 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4301 MicroRNAs 476 2010-04-30 2014-11-19 100422855 ENSG00000265140 uc021qqs.1 NR_036183 MI0015828 +HGNC:38185 MIR4302 microRNA 4302 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4302 MicroRNAs 476 2010-04-30 2014-11-19 100422897 ENSG00000283603 NR_036188 MI0015833 +HGNC:38256 MIR4303 microRNA 4303 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4303 MicroRNAs 476 2010-04-30 2014-11-19 100422924 ENSG00000263890 uc021rch.1 NR_036189 MI0015834 +HGNC:38276 MIR4304 microRNA 4304 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4304 MicroRNAs 476 2010-04-30 2014-11-18 100422931 ENSG00000265526 uc021rfr.1 NR_036187 MI0015832 +HGNC:38301 MIR4305 microRNA 4305 non-coding RNA RNA, micro Approved 13 13 hsa-mir-4305 MicroRNAs 476 2010-04-30 2014-11-18 100422940 ENSG00000264171 uc021ril.1 NR_036190 MI0015835 +HGNC:38350 MIR4306 microRNA 4306 non-coding RNA RNA, micro Approved 13 13 hsa-mir-4306 MicroRNAs 476 2010-04-30 2014-11-19 100422861 ENSG00000263615 uc021rmc.1 NR_036191 MI0015836 +HGNC:38257 MIR4307 microRNA 4307 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4307 MicroRNAs 476 2010-04-30 2014-11-19 100423019 ENSG00000265165 uc021rrs.1 NR_036193 MI0015838 +HGNC:52004 MIR4307HG MIR4307 host gene non-coding RNA RNA, long non-coding Approved 14q12 14q12 2015-10-14 2015-10-14 101927081 ENSG00000257612 OTTHUMG00000170436 NR_110041 +HGNC:38206 MIR4308 microRNA 4308 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4308 MicroRNAs 476 2010-04-30 2014-11-19 100422984 ENSG00000265432 uc021rth.1 NR_036194 MI0015839 +HGNC:38336 MIR4309 microRNA 4309 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4309 MicroRNAs 476 2010-04-30 2014-11-19 100422954 ENSG00000266015 uc021sed.1 NR_036192 MI0015837 +HGNC:38383 MIR4310 microRNA 4310 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4310 MicroRNAs 476 2010-04-30 2014-11-19 100423013 ENSG00000264850 uc021sjo.1 NR_036195 MI0015840 +HGNC:38207 MIR4311 microRNA 4311 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4311 MicroRNAs 476 2010-04-30 2014-11-19 100422905 ENSG00000263512 uc021spd.1 NR_036196 MI0015841 +HGNC:38376 MIR4312 microRNA 4312 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4312 MicroRNAs 476 2010-04-30 2014-11-19 100422971 ENSG00000265195 uc021spk.1 NR_036197 MI0015842 +HGNC:38310 MIR4313 microRNA 4313 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4313 MicroRNAs 476 2010-04-30 2014-11-19 100423035 ENSG00000261043 uc021sqr.1 NR_036198 MI0015843 +HGNC:38191 MIR4314 microRNA 4314 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4314 MicroRNAs 476 2010-04-30 2014-11-19 100422983 ENSG00000264005 uc021tpn.1 NR_036201 MI0015846 +HGNC:38342 MIR4315-1 microRNA 4315-1 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4315-1 MicroRNAs 476 2010-04-30 2014-11-18 100423004 NR_036199 MI0015844 +HGNC:38356 MIR4315-2 microRNA 4315-2 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4315-2 MicroRNAs 476 2010-04-30 2014-11-19 100422961 NR_036271 MI0015983 +HGNC:38306 MIR4316 microRNA 4316 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4316 MicroRNAs 476 2010-04-30 2014-11-19 100422851 ENSG00000264060 uc021udy.1 NR_036200 MI0015845 +HGNC:38260 MIR4317 microRNA 4317 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4317 MicroRNAs 476 2010-04-30 2014-11-19 100422840 ENSG00000283532 NR_036205 MI0015850 +HGNC:38333 MIR4318 microRNA 4318 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4318 MicroRNAs 476 2010-04-30 2014-11-19 100422857 ENSG00000266530 uc021uiz.1 NR_036202 MI0015847 +HGNC:38212 MIR4319 microRNA 4319 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4319 MicroRNAs 476 2010-04-30 2014-11-19 100422829 ENSG00000265957 uc021uje.1 NR_036203 MI0015848 +HGNC:38369 MIR4320 microRNA 4320 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4320 MicroRNAs 476 2010-04-30 2014-11-19 100422865 ENSG00000283343 NR_036204 MI0015849 +HGNC:38244 MIR4321 microRNA 4321 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4321 MicroRNAs 476 2010-04-30 2014-11-18 100423031 uc021umr.1 NR_036207 MI0015852 +HGNC:38261 MIR4322 microRNA 4322 non-coding RNA RNA, micro Approved 19p13.2 19p13.2 hsa-mir-4322 MicroRNAs 476 2010-04-30 2014-11-19 100422925 ENSG00000264266 uc021uot.1 NR_036206 MI0015851 +HGNC:38394 MIR4323 microRNA 4323 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4323 MicroRNAs 476 2010-04-30 2014-11-19 100422980 ENSG00000266226 uc021uvb.1 NR_036208 MI0015853 +HGNC:38392 MIR4324 microRNA 4324 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4324 MicroRNAs 476 2010-04-30 2014-11-18 100422979 ENSG00000265407 uc021uxj.1 NR_036209 MI0015854 +HGNC:38304 MIR4325 microRNA 4325 non-coding RNA RNA, micro Approved 20 20 hsa-mir-4325 MicroRNAs 476 2010-04-30 2014-11-19 100422883 ENSG00000266666 uc021wfb.1 NR_036219 MI0015865 +HGNC:38314 MIR4326 microRNA 4326 non-coding RNA RNA, micro Approved 20 20 hsa-mir-4326 MicroRNAs 476 2010-04-30 2014-11-18 100422945 ENSG00000266104 uc021wgb.1 NR_036220 MI0015866 +HGNC:38355 MIR4327 microRNA 4327 non-coding RNA RNA, micro Approved 21 21 hsa-mir-4327 MicroRNAs 476 2010-04-30 2014-11-19 100422891 ENSG00000265007 uc021wig.1 NR_036221 MI0015867 +HGNC:38280 MIR4328 microRNA 4328 non-coding RNA RNA, micro Approved X X hsa-mir-4328 MicroRNAs 476 2010-04-30 2014-11-19 100422932 ENSG00000283622 NR_036258 MI0015904 +HGNC:38290 MIR4329 microRNA 4329 non-coding RNA RNA, micro Approved X X hsa-mir-4329 MicroRNAs 476 2010-04-30 2014-11-18 100423009 uc022ccu.1 NR_036255 MI0015901 +HGNC:38273 MIR4330 microRNA 4330 non-coding RNA RNA, micro Approved X X hsa-mir-4330 MicroRNAs 476 2010-04-30 2014-11-19 100422930 ENSG00000265789 uc022cgs.1 NR_036256 MI0015902 +HGNC:41535 MIR4417 microRNA 4417 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4417 MicroRNAs 476 2011-05-02 2014-11-19 100616489 ENSG00000264341 uc021ofm.1 NR_039612 MI0016753 +HGNC:41789 MIR4418 microRNA 4418 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4418 MicroRNAs 476 2011-05-02 2014-11-19 100616433 ENSG00000266564 uc031tso.1 NR_039613 MI0016754 +HGNC:41828 MIR4419A microRNA 4419a non-coding RNA RNA, micro Approved 1 01 hsa-mir-4419a MicroRNAs 476 2011-05-02 2014-11-19 100616177 ENSG00000266802 uc031tsr.1 NR_039614 MI0016755 +HGNC:41724 MIR4419B microRNA 4419b non-coding RNA RNA, micro Approved 12 12 hsa-mir-4419b MicroRNAs 476 2011-05-02 2014-11-18 100616298 ENSG00000265061 uc031zse.1 NR_039720 MI0016861 +HGNC:41772 MIR4420 microRNA 4420 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4420 MicroRNAs 476 2011-05-02 2014-11-19 100616164 ENSG00000264773 uc021okj.1 NR_039616 MI0016757 +HGNC:41879 MIR4421 microRNA 4421 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4421 MicroRNAs 476 2011-05-02 2014-11-18 100616189 ENSG00000265538 uc031uaf.1 NR_039617 MI0016758 +HGNC:41654 MIR4422 microRNA 4422 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4422 MicroRNAs 476 2011-05-02 2014-11-19 100616272 ENSG00000265822 uc021ony.1 NR_039618 MI0016759 +HGNC:41784 MIR4423 microRNA 4423 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4423 MicroRNAs 476 2011-05-02 2014-11-19 100616481 ENSG00000266110 uc021opc.1 NR_039619 MI0016760 +HGNC:41805 MIR4424 microRNA 4424 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4424 MicroRNAs 476 2011-05-02 2014-11-19 100616328 ENSG00000266417 uc021pfg.1 NR_039622 MI0016763 +HGNC:41891 MIR4425 microRNA 4425 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4425 MicroRNAs 476 2011-05-02 2014-11-19 100616365 ENSG00000264371 uc031tua.1 NR_039623 MI0016764 +HGNC:41848 MIR4426 microRNA 4426 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4426 MicroRNAs 476 2011-05-02 2014-11-18 100616345 NR_039624 MI0016765 +HGNC:41678 MIR4427 microRNA 4427 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4427 MicroRNAs 476 2011-05-02 2014-11-19 100616390 ENSG00000265744 uc021pkp.1 NR_039625 MI0016766 +HGNC:41667 MIR4428 microRNA 4428 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4428 MicroRNAs 476 2011-05-02 2014-11-19 100616141 ENSG00000266262 uc031vst.1 NR_039626 MI0016767 +HGNC:41579 MIR4429 microRNA 4429 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4429 MicroRNAs 476 2011-05-02 2014-11-18 100616469 ENSG00000264010 uc021vdw.1 NR_039627 MI0016768 +HGNC:41646 MIR4430 microRNA 4430 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4430 MicroRNAs 476 2011-05-02 2014-11-19 100616136 ENSG00000283591 NR_039628 MI0016769 +HGNC:41738 MIR4431 microRNA 4431 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4431 MicroRNAs 476 2011-05-02 2014-11-19 100616431 ENSG00000264975 uc032nnd.1 NR_039630 MI0016771 +HGNC:41649 MIR4432 microRNA 4432 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4432 MicroRNAs 476 2011-05-02 2014-11-19 100616473 ENSG00000266078 uc021vie.1 NR_039631 MI0016772 +HGNC:52005 MIR4432HG MIR4432 host gene non-coding RNA RNA, long non-coding Approved 2p16.1 02p16.1 2015-10-14 2015-10-14 106660609 ENSG00000223929 OTTHUMG00000152618 NR_132991 +HGNC:41634 MIR4433A microRNA 4433a non-coding RNA RNA, micro Approved 2 02 hsa-mir-4433 MIR4433 microRNA 4433 MicroRNAs 476 2011-05-02 2014-06-26 2014-06-26 2014-11-18 100616265 ENSG00000283222 NR_039632 MI0016773 +HGNC:50258 MIR4433B microRNA 4433b non-coding RNA RNA, micro Approved 2 02 hsa-mir-4433b MicroRNAs 476 2014-03-24 2014-11-19 102465833 ENSG00000264297 NR_106995 MI0025511 +HGNC:41832 MIR4434 microRNA 4434 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4434 MicroRNAs 476 2011-05-02 2014-11-19 100616419 ENSG00000283204 NR_039633 MI0016774 +HGNC:41713 MIR4435-1 microRNA 4435-1 non-coding RNA RNA, micro Approved 2p11.2 02p11.2 hsa-mir-4435-1 MicroRNAs 476 2011-05-02 2015-04-22 100616499 ENSG00000265507 uc021vkl.1 NR_039634 MI0016775 +HGNC:41837 MIR4435-2 microRNA 4435-2 non-coding RNA RNA, micro Approved 2q13 02q13 hsa-mir-4435-2 MicroRNAs 476 2011-05-02 2015-04-22 100616341 ENSG00000266139 uc021vmu.1 NR_039636 MI0016777 +HGNC:35163 MIR4435-2HG MIR4435-2 host gene non-coding RNA RNA, long non-coding Approved 2q13 02q13 "LINC00978|AGD2|AK001796" "long intergenic non-protein coding RNA 978|adipogenesis down-regulated transcript 2" MIR4435-1HG "MIR4435-1 host gene (non-protein coding)|MIR4435-1 host gene" 2013-07-01 2015-04-22 2015-04-22 2015-04-22 541471 ENSG00000172965 OTTHUMG00000150313 BX647931 NR_015395 "19531736|25888808" +HGNC:41762 MIR4436A microRNA 4436a non-coding RNA RNA, micro Approved 2 02 hsa-mir-4436a MicroRNAs 476 2011-05-02 2014-11-19 100616399 ENSG00000265510 uc021vks.1 NR_039635 MI0016776 +HGNC:41587 MIR4436B1 microRNA 4436b-1 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4436b MIR4436B microRNA 4436b MicroRNAs 476 2011-05-02 2011-11-14 2011-11-14 2014-11-19 100616123 ENSG00000264979 uc031ror.1 NR_039941 MI0017425 +HGNC:43451 MIR4436B2 microRNA 4436b-2 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4436b-2 2011-11-14 2011-11-14 100847033 ENSG00000263881 uc031ros.1 NR_049830 MI0019110 +HGNC:41715 MIR4437 microRNA 4437 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4437 MicroRNAs 476 2011-05-02 2014-11-18 100616213 ENSG00000266705 uc021vtg.1 NR_039637 MI0016778 +HGNC:41555 MIR4438 microRNA 4438 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4438 MicroRNAs 476 2011-05-02 2014-11-19 100616375 ENSG00000265734 uc032orz.1 NR_039640 MI0016781 +HGNC:41622 MIR4439 microRNA 4439 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4439 MicroRNAs 476 2011-05-02 2014-11-19 100616207 ENSG00000263828 uc021vxm.1 NR_039641 MI0016782 +HGNC:41740 MIR4440 microRNA 4440 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4440 MicroRNAs 476 2011-05-02 2014-11-18 100616397 ENSG00000266109 uc021vyy.1 NR_039642 MI0016783 +HGNC:41728 MIR4441 microRNA 4441 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4441 MicroRNAs 476 2011-05-02 2014-11-19 100616493 ENSG00000264810 uc021vyz.1 NR_039643 MI0016784 +HGNC:41718 MIR4442 microRNA 4442 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4442 MicroRNAs 476 2011-05-02 2014-11-19 100616477 uc021wui.2 NR_039644 MI0016785 +HGNC:41830 MIR4443 microRNA 4443 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4443 MicroRNAs 476 2011-05-02 2014-11-19 100616407 ENSG00000265483 uc021wxl.1 NR_039645 MI0016786 +HGNC:41710 MIR4444-1 microRNA 4444-1 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4444 MIR4444 microRNA 4444 MicroRNAs 476 2011-05-02 2011-11-14 2011-11-14 2014-11-18 100616394 uc061pzv.1 NR_039646 MI0016787 +HGNC:43481 MIR4444-2 microRNA 4444-2 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4444-2 2011-11-14 2011-11-14 100846999 ENSG00000266780 uc031sao.2 NR_049831 MI0019111 +HGNC:41614 MIR4445 microRNA 4445 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4445 MicroRNAs 476 2011-05-02 2014-11-19 100616129 ENSG00000265956 uc032rxc.1 NR_039647 MI0016788 +HGNC:41700 MIR4446 microRNA 4446 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4446 MicroRNAs 476 2011-05-02 2014-11-19 100616476 ENSG00000265253 uc021xcp.1 NR_039648 MI0016789 +HGNC:41850 MIR4447 microRNA 4447 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4447 MicroRNAs 476 2011-05-02 2014-11-19 100616485 ENSG00000265433 uc032ryg.1 NR_039649 MI0016790 +HGNC:41604 MIR4448 microRNA 4448 non-coding RNA RNA, micro Approved 3q27.1 03q27.1 hsa-mir-4448 MicroRNAs 476 2011-05-02 2014-11-18 100616127 ENSG00000263932 uc032slz.1 NR_039650 MI0016791 +HGNC:41864 MIR4449 microRNA 4449 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4449 MicroRNAs 476 2011-05-02 2014-11-19 100616436 ENSG00000264585 uc021xoi.1 NR_039651 614627 MI0016792 +HGNC:41725 MIR4450 microRNA 4450 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4450 MicroRNAs 476 2011-05-02 2014-11-19 100616299 ENSG00000263445 uc021xpg.1 NR_039654 MI0016795 +HGNC:41858 MIR4451 microRNA 4451 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4451 MicroRNAs 476 2011-05-02 2014-11-19 100616349 ENSG00000266421 NR_039656 MI0016797 +HGNC:41539 MIR4452 microRNA 4452 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4452 MicroRNAs 476 2011-05-02 2014-11-19 100616463 ENSG00000266515 uc032toy.1 NR_039657 MI0016798 +HGNC:41892 MIR4453 microRNA 4453 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4453 MicroRNAs 476 2011-05-02 2014-11-19 100616193 ENSG00000268471 uc063agw.1 NR_039658 MI0016799 +HGNC:41553 MIR4454 microRNA 4454 non-coding RNA RNA, micro Approved 4q32.2 04q32.2 hsa-mir-4454 MicroRNAs 476 2011-05-02 2014-11-19 100616234 ENSG00000283468 NR_039659 MI0016800 +HGNC:41536 MIR4455 microRNA 4455 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4455 MicroRNAs 476 2011-05-02 2014-11-19 100616111 ENSG00000263458 uc032ugp.1 NR_039660 MI0016801 +HGNC:41606 MIR4456 microRNA 4456 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4456 MicroRNAs 476 2011-05-02 2014-11-19 100616381 ENSG00000264233 uc021xvw.1 NR_039661 MI0016802 +HGNC:41554 MIR4457 microRNA 4457 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4457 MicroRNAs 476 2011-05-02 2014-11-19 100616235 ENSG00000263670 uc021xwd.1 NR_039662 MI0016803 +HGNC:41674 MIR4458 microRNA 4458 non-coding RNA RNA, micro Approved 5p15.31 05p15.31 hsa-mir-4458 MicroRNAs 476 2011-05-02 2015-02-03 100616142 ENSG00000273868 uc021xwk.1 NR_039663 MI0016804 +HGNC:49008 MIR4458HG MIR4458 host gene non-coding RNA RNA, long non-coding Approved 5p15.31 05p15.31 MIR4458 host gene (non-protein coding) 2013-07-30 2015-02-20 2015-02-20 100505738 ENSG00000247516 OTTHUMG00000161710 NR_039989 +HGNC:41551 MIR4459 microRNA 4459 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4459 MicroRNAs 476 2011-05-02 2014-11-19 100616233 ENSG00000265421 uc032uub.1 NR_039664 MI0016805 +HGNC:41795 MIR4460 microRNA 4460 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4460 MicroRNAs 476 2011-05-02 2014-11-19 100616325 ENSG00000265691 uc021ydg.1 NR_039665 MI0016806 +HGNC:41656 MIR4461 microRNA 4461 non-coding RNA RNA, micro Approved 5q31.1 05q31.1 hsa-mir-4461 MicroRNAs 476 2011-05-02 2015-10-26 100616209 ENSG00000263963 uc021ydt.1 NR_039666 MI0016807 +HGNC:41549 MIR4462 microRNA 4462 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4462 MicroRNAs 476 2011-05-02 2014-11-19 100616413 ENSG00000263926 uc021yzf.3 NR_039669 MI0016810 +HGNC:41665 MIR4463 microRNA 4463 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4463 MicroRNAs 476 2011-05-02 2014-11-19 100616389 ENSG00000263533 uc032xbe.1 NR_039670 MI0016811 +HGNC:41528 MIR4464 microRNA 4464 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4464 MicroRNAs 476 2011-05-02 2014-11-19 100616109 ENSG00000266760 uc021zct.1 NR_039671 MI0016812 +HGNC:41842 MIR4465 microRNA 4465 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4465 MicroRNAs 476 2011-05-02 2014-11-19 100616180 ENSG00000264390 uc021zge.1 NR_039675 MI0016816 +HGNC:41726 MIR4466 microRNA 4466 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4466 MicroRNAs 476 2011-05-02 2014-11-19 100616154 ENSG00000271899 uc021zhj.1 NR_039676 MI0016817 +HGNC:41896 MIR4467 microRNA 4467 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4467 MicroRNAs 476 2011-05-02 2014-11-19 100616367 uc022ajg.1 NR_039677 MI0016818 +HGNC:41533 MIR4468 microRNA 4468 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4468 MicroRNAs 476 2011-05-02 2014-11-18 100616226 uc022amk.1 NR_039678 MI0016819 +HGNC:41556 MIR4469 microRNA 4469 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4469 MicroRNAs 476 2011-05-02 2014-11-19 100616115 uc022aum.1 NR_039679 MI0016820 +HGNC:41833 MIR4470 microRNA 4470 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4470 MicroRNAs 476 2011-05-02 2014-11-19 100616484 ENSG00000264408 uc022ava.1 NR_039680 MI0016821 +HGNC:41657 MIR4471 microRNA 4471 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4471 MicroRNAs 476 2011-05-02 2014-11-18 100616451 ENSG00000265599 uc022azi.1 NR_039681 MI0016822 +HGNC:41644 MIR4472-1 microRNA 4472-1 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4472-1 MicroRNAs 476 2011-05-02 2014-11-19 100616268 ENSG00000265247 uc022bbz.1 NR_039682 MI0016823 +HGNC:41752 MIR4472-2 microRNA 4472-2 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4472-2 MicroRNAs 476 2011-05-02 2014-11-19 100616309 ENSG00000264037 uc021rei.1 NR_039683 MI0016824 +HGNC:41540 MIR4473 microRNA 4473 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4473 MicroRNAs 476 2011-05-02 2014-11-19 100616229 ENSG00000263790 uc022bdy.1 NR_039684 MI0016825 +HGNC:41821 MIR4474 microRNA 4474 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4474 MicroRNAs 476 2011-05-02 2014-11-19 100616441 ENSG00000264941 uc022bea.1 NR_039685 MI0016826 +HGNC:41697 MIR4475 microRNA 4475 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4475 MicroRNAs 476 2011-05-02 2014-11-18 100616289 ENSG00000266255 uc022bgr.1 NR_039686 MI0016827 +HGNC:41793 MIR4476 microRNA 4476 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4476 MicroRNAs 476 2011-05-02 2014-11-18 100616456 ENSG00000265368 uc022bgt.1 NR_039687 MI0016828 +HGNC:41859 MIR4477A microRNA 4477a non-coding RNA RNA, micro Approved 9 09 hsa-mir-4477a MicroRNAs 476 2011-05-02 2014-11-19 100616184 ENSG00000276029 uc033csg.1 NR_039688 MI0016829 +HGNC:41898 MIR4477B microRNA 4477b non-coding RNA RNA, micro Approved 9 09 hsa-mir-4477b MicroRNAs 476 2011-05-02 2014-11-18 100616194 ENSG00000266017 uc033ctu.1 NR_039689 MI0016830 +HGNC:41759 MIR4478 microRNA 4478 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4478 MicroRNAs 476 2011-05-02 2014-11-19 100616312 ENSG00000266583 uc022bmv.1 NR_039690 MI0016831 +HGNC:41767 MIR4479 microRNA 4479 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4479 MicroRNAs 476 2011-05-02 2014-11-19 100616480 ENSG00000266507 uc022bpw.1 NR_039697 MI0016838 +HGNC:41716 MIR4480 microRNA 4480 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4480 MicroRNAs 476 2011-05-02 2014-11-19 100616151 ENSG00000263584 uc021pmz.1 NR_039700 MI0016841 +HGNC:41781 MIR4481 microRNA 4481 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4481 MicroRNAs 476 2011-05-02 2014-11-19 100616320 ENSG00000283699 NR_039701 MI0016842 +HGNC:41792 MIR4482 microRNA 4482 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4482 MIR4482-1 microRNA 4482-1 MicroRNAs 476 2011-05-02 2014-03-17 2014-03-17 2014-11-19 100616323 ENSG00000266852 NR_039702 MI0016843 +HGNC:41761 MIR4483 microRNA 4483 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4483 MicroRNAs 476 2011-05-02 2014-11-19 100616162 ENSG00000283656 NR_039703 MI0016844 +HGNC:41799 MIR4484 microRNA 4484 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4484 MicroRNAs 476 2011-05-02 2014-11-19 100616327 ENSG00000265092 uc021qaq.1 NR_039704 MI0016845 +HGNC:41628 MIR4485 microRNA 4485 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4485 MicroRNAs 476 2011-05-02 2014-11-19 100616263 NR_039705 MI0016846 +HGNC:41566 MIR4486 microRNA 4486 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4486 MicroRNAs 476 2011-05-02 2014-11-19 100616118 ENSG00000265210 uc021qeu.1 NR_039706 MI0016847 +HGNC:41851 MIR4487 microRNA 4487 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4487 MicroRNAs 476 2011-05-02 2014-11-19 100616222 ENSG00000264583 uc031xoj.1 NR_039707 MI0016848 +HGNC:41599 MIR4488 microRNA 4488 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4488 MicroRNAs 476 2011-05-02 2014-11-19 100616470 ENSG00000266006 uc021qkg.1 NR_039708 MI0016849 +HGNC:41685 MIR4489 microRNA 4489 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4489 MicroRNAs 476 2011-05-02 2014-11-19 100616284 ENSG00000265874 uc021qlo.1 NR_039709 MI0016850 +HGNC:41871 MIR4490 microRNA 4490 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4490 MicroRNAs 476 2011-05-02 2014-11-19 100616186 ENSG00000266703 uc021qor.1 NR_039711 MI0016852 +HGNC:41808 MIR4491 microRNA 4491 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4491 MicroRNAs 476 2011-05-02 2014-11-19 100616330 ENSG00000264032 uc021qqi.2 NR_039712 MI0016853 +HGNC:41563 MIR4492 microRNA 4492 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4492 MicroRNAs 476 2011-05-02 2014-11-19 100616376 ENSG00000264211 uc021qrh.1 NR_039713 MI0016854 +HGNC:41778 MIR4493 microRNA 4493 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4493 MicroRNAs 476 2011-05-02 2014-11-19 100616319 ENSG00000265357 uc021qrs.1 NR_039714 MI0016855 +HGNC:41731 MIR4494 microRNA 4494 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4494 MicroRNAs 476 2011-05-02 2014-11-19 100616478 ENSG00000264906 uc031zar.1 NR_039715 MI0016856 +HGNC:41693 MIR4495 microRNA 4495 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4495 MicroRNAs 476 2011-05-02 2014-11-19 100616287 ENSG00000265861 uc031zkg.1 NR_039716 MI0016857 +HGNC:41569 MIR4496 microRNA 4496 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4496 MicroRNAs 476 2011-05-02 2014-11-19 100616240 ENSG00000257221 NR_039717 MI0016858 +HGNC:41737 MIR4497 microRNA 4497 non-coding RNA RNA, micro Approved 12q24.11 12q24.11 hsa-mir-4497 MicroRNAs 476 2011-05-02 2015-07-22 100616454 ENSG00000263510 uc021rdr.1 NR_039718 MI0016859 +HGNC:41838 MIR4498 microRNA 4498 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4498 MicroRNAs 476 2011-05-02 2014-11-19 100616179 ENSG00000266704 uc021res.1 NR_039719 MI0016860 +HGNC:41739 MIR4499 microRNA 4499 non-coding RNA RNA, micro Approved 13 13 hsa-mir-4499 MicroRNAs 476 2011-05-02 2014-11-19 100616304 ENSG00000263978 uc021rhc.1 NR_039721 MI0016862 +HGNC:41853 MIR4500 microRNA 4500 non-coding RNA RNA, micro Approved 13q31.2 13q31.2 hsa-mir-4500 MicroRNAs 476 2011-05-02 2014-11-18 100616182 ENSG00000266052 uc021rlb.1 NR_039722 MI0016863 +HGNC:42773 MIR4500HG MIR4500 host gene non-coding RNA RNA, long non-coding Approved 13q31.2 13q31.2 MIR4500 host gene (non-protein coding) 2011-08-18 2015-02-20 2015-02-20 642345 ENSG00000228824 OTTHUMG00000017166 uc001vlm.2 NR_033829 +HGNC:41650 MIR4501 microRNA 4501 non-coding RNA RNA, micro Approved 13 13 hsa-mir-4501 MicroRNAs 476 2011-05-02 2014-11-19 100616137 ENSG00000283487 NR_039723 MI0016864 +HGNC:41534 MIR4502 microRNA 4502 non-coding RNA RNA, micro Approved 13 13 hsa-mir-4502 MicroRNAs 476 2011-05-02 2014-11-19 100616227 ENSG00000265450 uc032aqa.1 NR_039724 MI0016865 +HGNC:41675 MIR4503 microRNA 4503 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4503 MicroRNAs 476 2011-05-02 2014-11-19 100616280 ENSG00000266327 uc021rsg.1 NR_039725 MI0016866 +HGNC:41624 MIR4504 microRNA 4504 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4504 MicroRNAs 476 2011-05-02 2014-11-19 100616261 ENSG00000264712 uc032bbn.2 NR_039726 MI0016867 +HGNC:41743 MIR4505 microRNA 4505 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4505 MicroRNAs 476 2011-05-02 2014-11-18 100616158 ENSG00000264741 uc021rwi.1 NR_039727 MI0016868 +HGNC:41663 MIR4506 microRNA 4506 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4506 MicroRNAs 476 2011-05-02 2014-11-19 100616140 ENSG00000265768 uc032bkf.1 NR_039728 MI0016869 +HGNC:41642 MIR4507 microRNA 4507 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4507 MicroRNAs 476 2011-05-02 2014-11-19 100616135 ENSG00000264024 NR_039730 MI0016871 +HGNC:41659 MIR4508 microRNA 4508 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4508 MicroRNAs 476 2011-05-02 2014-11-19 100616275 ENSG00000265673 uc021sfz.1 NR_039731 MI0016872 +HGNC:41860 MIR4509-1 microRNA 4509-1 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4509-1 MicroRNAs 476 2011-05-02 2014-11-19 100616223 ENSG00000276941 uc032dml.1 NR_039732 MI0016873 +HGNC:41537 MIR4509-2 microRNA 4509-2 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4509-2 MicroRNAs 476 2011-05-02 2014-11-19 100616228 ENSG00000266039 uc021sgm.1 NR_039733 MI0016874 +HGNC:41610 MIR4509-3 microRNA 4509-3 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4509-3 MicroRNAs 476 2011-05-02 2014-11-19 100616382 ENSG00000263964 uc021sgn.1 NR_039734 MI0016875 +HGNC:41708 MIR4510 microRNA 4510 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4510 MicroRNAs 476 2011-05-02 2014-11-19 100616293 ENSG00000265098 NR_039735 MI0016876 +HGNC:41589 MIR4511 microRNA 4511 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4511 MicroRNAs 476 2011-05-02 2014-11-19 100616379 ENSG00000264737 uc021spb.1 NR_039736 MI0016877 +HGNC:41701 MIR4512 microRNA 4512 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4512 MicroRNAs 476 2011-05-02 2014-11-19 100616149 ENSG00000266589 uc032chp.1 NR_039737 MI0016878 +HGNC:41855 MIR4513 microRNA 4513 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4513 MicroRNAs 476 2011-05-02 2014-11-19 100616183 ENSG00000264386 uc021sql.1 NR_039738 MI0016879 +HGNC:41845 MIR4514 microRNA 4514 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4514 MicroRNAs 476 2011-05-02 2014-11-19 100616181 ENSG00000265855 uc021ssf.1 NR_039739 MI0016880 +HGNC:41800 MIR4515 microRNA 4515 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4515 MicroRNAs 476 2011-05-02 2014-11-19 100616404 ENSG00000263643 uc021ste.1 NR_039740 MI0016881 +HGNC:41617 MIR4516 microRNA 4516 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4516 MicroRNAs 476 2011-05-02 2014-11-19 100616258 ENSG00000265867 uc021taq.1 NR_039741 MI0016882 +HGNC:41878 MIR4517 microRNA 4517 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4517 MicroRNAs 476 2011-05-02 2014-11-18 100616487 uc021tfu.1 NR_039742 MI0016883 +HGNC:41809 MIR4518 microRNA 4518 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4518 MicroRNAs 476 2011-05-02 2014-11-19 100616405 ENSG00000266305 uc021tgm.1 NR_039743 MI0016884 +HGNC:41544 MIR4519 microRNA 4519 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4519 MicroRNAs 476 2011-05-02 2014-11-18 100616231 ENSG00000265991 uc021tgr.1 NR_039744 MI0016885 +HGNC:41775 MIR4520-1 microRNA 4520-1 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4520a MIR4520A microRNA 4520a MicroRNAs 476 2011-05-02 2014-06-26 2014-06-26 2014-11-19 100616401 ENSG00000264468 NR_039745 MI0016886 +HGNC:41839 MIR4520-2 microRNA 4520-2 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4520b MIR4520B microRNA 4520b MicroRNAs 476 2011-05-02 2014-06-26 2014-06-26 2014-11-18 100616466 ENSG00000283301 NR_039874 MI0017358 +HGNC:41813 MIR4521 microRNA 4521 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4521 MicroRNAs 476 2011-05-02 2014-11-19 100616406 ENSG00000283160 NR_039746 MI0016887 +HGNC:41668 MIR4522 microRNA 4522 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4522 MicroRNAs 476 2011-05-02 2014-11-19 100616277 ENSG00000263583 uc021ttf.1 NR_039748 MI0016889 +HGNC:41583 MIR4523 microRNA 4523 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4523 MicroRNAs 476 2011-05-02 2014-11-19 100616122 uc021tty.1 NR_039749 MI0016890 +HGNC:41771 MIR4524A microRNA 4524a non-coding RNA RNA, micro Approved 17 17 hsa-mir-4524 MIR4524 microRNA 4524 MicroRNAs 476 2011-05-02 2011-11-14 2011-11-14 2014-11-19 100616316 ENSG00000283385 NR_039750 MI0016891 +HGNC:43520 MIR4524B microRNA 4524b non-coding RNA RNA, micro Approved 17 17 hsa-mir-4524b 2011-11-14 2011-11-14 100847008 ENSG00000265331 uc031reg.1 NR_049834 MI0019114 +HGNC:41903 MIR4525 microRNA 4525 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4525 MicroRNAs 476 2011-05-02 2014-11-19 100616196 ENSG00000266107 uc032ftn.1 NR_039751 MI0016892 +HGNC:41618 MIR4526 microRNA 4526 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4526 MicroRNAs 476 2011-05-02 2014-11-18 100616130 ENSG00000263527 uc021uhr.1 NR_039752 MI0016893 +HGNC:41633 MIR4527 microRNA 4527 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4527 MicroRNAs 476 2011-05-02 2014-11-19 100616264 ENSG00000266582 uc032hde.1 NR_039753 MI0016894 +HGNC:41547 MIR4528 microRNA 4528 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4528 MicroRNAs 476 2011-05-02 2014-11-19 100616232 ENSG00000263872 uc060pgn.1 NR_130465 MI0016895 +HGNC:41703 MIR4529 microRNA 4529 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4529 MicroRNAs 476 2011-05-02 2014-11-18 100616290 ENSG00000264571 uc021ukn.1 NR_039754 MI0016896 +HGNC:41764 MIR4530 microRNA 4530 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4530 MicroRNAs 476 2011-05-02 2014-11-19 100616163 ENSG00000266559 uc021uuk.1 NR_039755 MI0016897 +HGNC:41872 MIR4531 microRNA 4531 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4531 MicroRNAs 476 2011-05-02 2014-11-19 100616355 ENSG00000283673 NR_039756 MI0016898 +HGNC:41869 MIR4532 microRNA 4532 non-coding RNA RNA, micro Approved 20 20 hsa-mir-4532 MicroRNAs 476 2011-05-02 2014-11-19 100616353 ENSG00000263453 uc021wfh.1 NR_039757 MI0016899 +HGNC:41886 MIR4533 microRNA 4533 non-coding RNA RNA, micro Approved 20 20 hsa-mir-4533 MicroRNAs 476 2011-05-02 2014-11-19 100616362 ENSG00000266140 uc021wfu.1 NR_039758 MI0016900 +HGNC:41692 MIR4534 microRNA 4534 non-coding RNA RNA, micro Approved 22 22 hsa-mir-4534 MicroRNAs 476 2011-05-02 2014-11-19 100616146 ENSG00000279010 uc021wpm.1 NR_039759 MI0016901 +HGNC:41629 MIR4535 microRNA 4535 non-coding RNA RNA, micro Approved 22 22 hsa-mir-4535 MicroRNAs 476 2011-05-02 2014-11-19 100616415 ENSG00000266887 uc021wru.1 NR_039761 MI0016903 +HGNC:41730 MIR4536-1 microRNA 4536-1 non-coding RNA RNA, micro Approved X X hsa-mir-4536 MIR4536 microRNA 4536 MicroRNAs 476 2011-05-02 2011-11-14 2011-11-14 2014-11-18 100616155 ENSG00000283334 NR_039764 MI0016906 +HGNC:43525 MIR4536-2 microRNA 4536-2 non-coding RNA RNA, micro Approved X X hsa-mir-4536-2 2011-11-14 2011-11-14 100847061 ENSG00000283334 NR_130469 MI0019149 +HGNC:41682 MIR4537 microRNA 4537 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4537 MicroRNAs 476 2011-05-02 2014-11-19 100616422 ENSG00000264781 uc059gdw.1 NR_130466 MI0016908 +HGNC:41664 MIR4538 microRNA 4538 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4538 MicroRNAs 476 2011-05-02 2014-11-19 100616276 ENSG00000263413 uc032bnc.2 NR_130467 MI0016909 +HGNC:41546 MIR4539 microRNA 4539 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4539 MicroRNAs 476 2011-05-02 2014-11-19 100616374 ENSG00000265612 uc059gds.1 NR_130468 MI0016910 +HGNC:41670 MIR4540 microRNA 4540 non-coding RNA RNA, micro Approved 9p13.2 09p13.2 hsa-mir-4540 MicroRNAs 476 2011-05-02 2014-11-18 100616278 ENSG00000264922 uc022bgs.1 NR_039766 MI0016911 +HGNC:41593 MIR4632 microRNA 4632 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4632 MicroRNAs 476 2011-05-02 2014-11-19 100616438 ENSG00000263676 uc021ogi.2 NR_039775 MI0017259 +HGNC:41822 MIR4633 microRNA 4633 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4633 MicroRNAs 476 2011-05-02 2014-11-19 100616175 ENSG00000264563 uc021ydf.1 NR_039776 MI0017260 +HGNC:41559 MIR4634 microRNA 4634 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4634 MicroRNAs 476 2011-05-02 2014-11-19 100616202 ENSG00000266890 uc021yhz.1 NR_039777 MI0017261 +HGNC:41748 MIR4635 microRNA 4635 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4635 MicroRNAs 476 2011-05-02 2014-11-19 100616479 ENSG00000263834 uc021xvy.1 NR_039778 MI0017262 +HGNC:41798 MIR4636 microRNA 4636 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4636 MicroRNAs 476 2011-05-02 2014-11-18 100616326 ENSG00000266415 uc021xwl.1 NR_039779 MI0017263 +HGNC:41651 MIR4637 microRNA 4637 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4637 MicroRNAs 476 2011-05-02 2014-11-19 100616271 ENSG00000264792 uc021xwq.1 NR_039780 MI0017264 +HGNC:41841 MIR4638 microRNA 4638 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4638 MicroRNAs 476 2011-05-02 2014-11-19 100616342 ENSG00000264732 uc021ykh.1 NR_039781 MI0017265 +HGNC:41645 MIR4639 microRNA 4639 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4639 MicroRNAs 476 2011-05-02 2014-11-19 100616269 ENSG00000263712 uc021ymb.2 NR_039782 MI0017266 +HGNC:41561 MIR4640 microRNA 4640 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4640 MicroRNAs 476 2011-05-02 2014-11-19 100616237 uc021zrf.1 NR_039783 MI0017267 +HGNC:41835 MIR4641 microRNA 4641 non-coding RNA RNA, micro Approved 6p21.1 06p21.1 hsa-mir-4641 MicroRNAs 476 2011-05-02 2014-11-18 100616178 ENSG00000266494 uc021yzk.2 NR_039784 MI0017268 +HGNC:41865 MIR4642 microRNA 4642 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4642 MicroRNAs 476 2011-05-02 2014-11-19 100616352 ENSG00000266619 uc021zaa.1 NR_039785 MI0017269 +HGNC:41814 MIR4643 microRNA 4643 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4643 MicroRNAs 476 2011-05-02 2014-11-19 100616174 ENSG00000263734 uc021zcv.1 NR_039786 MI0017270 +HGNC:41687 MIR4644 microRNA 4644 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4644 MicroRNAs 476 2011-05-02 2014-11-19 100616430 ENSG00000266245 uc021zip.1 NR_039787 MI0017271 +HGNC:41689 MIR4645 microRNA 4645 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4645 MicroRNAs 476 2011-05-02 2014-11-19 100616285 ENSG00000266750 uc021ykr.1 NR_039788 MI0017272 +HGNC:41543 MIR4646 microRNA 4646 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4646 MicroRNAs 476 2011-05-02 2014-11-19 100616230 ENSG00000266776 uc021zrw.1 NR_039789 MI0017273 +HGNC:41594 MIR4647 microRNA 4647 non-coding RNA RNA, micro Approved 6 06 hsa-mir-4647 MicroRNAs 476 2011-05-02 2014-11-18 100616124 uc021yzy.1 NR_039790 MI0017274 +HGNC:41560 MIR4648 microRNA 4648 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4648 MicroRNAs 476 2011-05-02 2014-11-19 100616116 ENSG00000264357 uc021zyy.2 NR_039791 MI0017275 +HGNC:41852 MIR4649 microRNA 4649 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4649 MicroRNAs 476 2011-05-02 2014-11-19 100616346 uc022aci.2 NR_039792 MI0017276 +HGNC:41755 MIR4650-1 microRNA 4650-1 non-coding RNA RNA, micro Approved 7q11.21 07q11.21 hsa-mir-4650-1 MicroRNAs 476 2011-05-02 2014-11-18 100616310 ENSG00000266525 uc022aff.1 NR_039793 MI0017277 +HGNC:41810 MIR4650-2 microRNA 4650-2 non-coding RNA RNA, micro Approved 7q11.22 07q11.22 hsa-mir-4650-2 MicroRNAs 476 2011-05-02 2014-11-19 100616331 ENSG00000264494 uc022afk.1 NR_039794 MI0017278 +HGNC:41647 MIR4651 microRNA 4651 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4651 MicroRNAs 476 2011-05-02 2014-11-19 100616270 uc022agk.1 NR_039795 MI0017279 +HGNC:41615 MIR4652 microRNA 4652 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4652 MicroRNAs 476 2011-05-02 2014-11-19 100616206 ENSG00000265423 uc022ahl.1 NR_039796 MI0017280 +HGNC:41562 MIR4653 microRNA 4653 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4653 MicroRNAs 476 2011-05-02 2014-11-19 100616117 ENSG00000264425 uc022aiy.1 NR_039797 MI0017281 +HGNC:41643 MIR4654 microRNA 4654 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4654 MicroRNAs 476 2011-05-02 2014-11-19 100616386 ENSG00000266144 uc021pdp.1 NR_039798 MI0017282 +HGNC:41754 MIR4655 microRNA 4655 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4655 MicroRNAs 476 2011-05-02 2014-11-19 100616160 ENSG00000265089 uc021zyt.1 NR_039799 MI0017283 +HGNC:41749 MIR4656 microRNA 4656 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4656 MicroRNAs 476 2011-05-02 2014-11-19 100616465 ENSG00000264474 uc021zzb.1 NR_039800 MI0017284 +HGNC:41706 MIR4657 microRNA 4657 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4657 MicroRNAs 476 2011-05-02 2014-11-19 100616393 uc064dka.1 NR_039801 MI0017285 +HGNC:41673 MIR4658 microRNA 4658 non-coding RNA RNA, micro Approved 7 07 hsa-mir-4658 MicroRNAs 476 2011-05-02 2014-11-19 100616439 uc022aih.1 NR_039802 MI0017286 +HGNC:41857 MIR4659A microRNA 4659a non-coding RNA RNA, micro Approved 8 08 hsa-mir-4659a MicroRNAs 476 2011-05-02 2014-11-19 100616348 ENSG00000266038 NR_039803 MI0017287 +HGNC:41530 MIR4659B microRNA 4659b non-coding RNA RNA, micro Approved 8 08 hsa-mir-4659b MicroRNAs 476 2011-05-02 2014-11-19 100616372 ENSG00000283386 uc022aqt.1 NR_039807 MI0017291 +HGNC:41861 MIR4660 microRNA 4660 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4660 MicroRNAs 476 2011-05-02 2014-11-19 100616350 ENSG00000263407 uc022aro.1 NR_039804 MI0017288 +HGNC:41582 MIR4661 microRNA 4661 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4661 MicroRNAs 476 2011-05-02 2014-11-19 100616245 ENSG00000266194 uc022axm.2 NR_039805 MI0017289 +HGNC:41826 MIR4662A microRNA 4662a non-coding RNA RNA, micro Approved 8 08 hsa-mir-4662a MicroRNAs 476 2011-05-02 2014-11-19 100616221 ENSG00000283609 uc033byf.1 NR_039806 MI0017290 +HGNC:41607 MIR4662B microRNA 4662b non-coding RNA RNA, micro Approved 8 08 hsa-mir-4662b MicroRNAs 476 2011-05-02 2014-11-19 100616255 ENSG00000263735 NR_039809 MI0017293 +HGNC:41623 MIR4663 microRNA 4663 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4663 MicroRNAs 476 2011-05-02 2014-11-19 100616260 ENSG00000266324 uc022baj.1 NR_039808 MI0017292 +HGNC:41777 MIR4664 microRNA 4664 non-coding RNA RNA, micro Approved 8 08 hsa-mir-4664 MicroRNAs 476 2011-05-02 2014-11-19 100616318 ENSG00000265660 uc022bci.1 NR_039810 MI0017294 +HGNC:41696 MIR4665 microRNA 4665 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4665 MicroRNAs 476 2011-05-02 2014-11-19 100616288 ENSG00000263575 uc022bde.1 NR_039811 MI0017295 +HGNC:41750 MIR4666A microRNA 4666a non-coding RNA RNA, micro Approved 1 01 hsa-mir-4666 MIR4666 microRNA 4666 MicroRNAs 476 2011-05-02 2011-11-14 2011-11-14 2014-11-18 100616308 ENSG00000266174 uc021pkh.1 NR_039812 MI0017296 +HGNC:43486 MIR4666B microRNA 4666b non-coding RNA RNA, micro Approved X X hsa-mir-4666b 2011-11-14 2011-11-14 100847047 ENSG00000264090 uc033dtr.1 NR_049877 MI0019299 +HGNC:41723 MIR4667 microRNA 4667 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4667 MicroRNAs 476 2011-05-02 2014-11-19 100616214 ENSG00000263892 NR_039813 MI0017297 +HGNC:41545 MIR4668 microRNA 4668 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4668 MicroRNAs 476 2011-05-02 2014-11-19 100616114 ENSG00000266315 uc022blz.1 NR_039814 MI0017298 +HGNC:41558 MIR4669 microRNA 4669 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4669 MicroRNAs 476 2011-05-02 2014-11-19 100616236 ENSG00000263897 uc022bpa.1 NR_039816 MI0017300 +HGNC:41862 MIR4670 microRNA 4670 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4670 MicroRNAs 476 2011-05-02 2014-11-19 100616351 ENSG00000264158 uc022bjz.1 NR_039817 MI0017301 +HGNC:41598 MIR4671 microRNA 4671 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4671 MicroRNAs 476 2011-05-02 2014-11-19 100616380 ENSG00000264377 uc021pkq.1 NR_039818 MI0017302 +HGNC:41662 MIR4672 microRNA 4672 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4672 MicroRNAs 476 2011-05-02 2014-11-19 100616429 ENSG00000263979 uc022bnu.1 NR_039819 MI0017303 +HGNC:41574 MIR4673 microRNA 4673 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4673 MicroRNAs 476 2011-05-02 2014-11-19 100616242 ENSG00000263403 uc022bpq.1 NR_039820 MI0017304 +HGNC:41729 MIR4674 microRNA 4674 non-coding RNA RNA, micro Approved 9 09 hsa-mir-4674 MicroRNAs 476 2011-05-02 2014-11-19 100616301 ENSG00000265181 uc022bpr.1 NR_039821 MI0017305 +HGNC:41619 MIR4675 microRNA 4675 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4675 MicroRNAs 476 2011-05-02 2014-11-19 100616383 ENSG00000265372 uc021pnt.1 NR_039822 MI0017306 +HGNC:41691 MIR4676 microRNA 4676 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4676 MicroRNAs 476 2011-05-02 2014-11-19 100616286 ENSG00000266719 uc021pti.1 NR_039823 MI0017307 +HGNC:41844 MIR4677 microRNA 4677 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4677 MicroRNAs 476 2011-05-02 2014-11-19 100616343 ENSG00000265201 uc021plt.1 NR_039824 MI0017308 +HGNC:41717 MIR4678 microRNA 4678 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4678 MicroRNAs 476 2011-05-02 2014-11-19 100616296 ENSG00000283672 NR_039825 MI0017309 +HGNC:41612 MIR4679-1 microRNA 4679-1 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4679-1 MicroRNAs 476 2011-05-02 2014-11-18 100616128 ENSG00000283664 uc021pwa.1 NR_039826 MI0017310 +HGNC:41890 MIR4679-2 microRNA 4679-2 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4679-2 MicroRNAs 476 2011-05-02 2014-11-19 100616192 ENSG00000265375 NR_039827 MI0017311 +HGNC:41541 MIR4680 microRNA 4680 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4680 MicroRNAs 476 2011-05-02 2014-11-19 100616113 uc021pye.2 NR_039828 MI0017312 +HGNC:41753 MIR4681 microRNA 4681 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4681 MicroRNAs 476 2011-05-02 2014-11-19 100616398 ENSG00000265719 uc021pzq.1 NR_039829 MI0017313 +HGNC:41788 MIR4682 microRNA 4682 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4682 MicroRNAs 476 2011-05-02 2014-11-19 100616322 ENSG00000265370 uc021pzs.1 NR_039830 MI0017314 +HGNC:41883 MIR4683 microRNA 4683 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4683 MicroRNAs 476 2011-05-02 2014-11-19 100616500 uc057sts.1 NR_039831 MI0017315 +HGNC:41695 MIR4684 microRNA 4684 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4684 MicroRNAs 476 2011-05-02 2014-11-19 100616391 ENSG00000265422 uc021oib.1 NR_039832 MI0017316 +HGNC:41802 MIR4685 microRNA 4685 non-coding RNA RNA, micro Approved 10 10 hsa-mir-4685 MicroRNAs 476 2011-05-02 2014-11-19 100616482 ENSG00000264610 uc021pww.2 NR_039833 MI0017317 +HGNC:41601 MIR4686 microRNA 4686 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4686 MicroRNAs 476 2011-05-02 2014-11-19 100616126 ENSG00000265258 uc021qce.1 NR_039834 MI0017318 +HGNC:41712 MIR4687 microRNA 4687 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4687 MicroRNAs 476 2011-05-02 2014-11-19 100616453 uc021qcp.1 NR_039835 MI0017319 +HGNC:41897 MIR4688 microRNA 4688 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4688 MicroRNAs 476 2011-05-02 2014-11-19 100616368 ENSG00000264102 uc021qim.1 NR_039837 MI0017321 +HGNC:41895 MIR4689 microRNA 4689 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4689 MicroRNAs 476 2011-05-02 2014-11-19 100616421 ENSG00000264101 uc021ofn.1 NR_039838 MI0017322 +HGNC:41707 MIR4690 microRNA 4690 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4690 MicroRNAs 476 2011-05-02 2014-11-19 100616292 ENSG00000266041 uc021qln.1 NR_039839 MI0017323 +HGNC:41796 MIR4691 microRNA 4691 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4691 MicroRNAs 476 2011-05-02 2014-11-19 100616403 uc021qml.1 NR_039840 MI0017324 +HGNC:41856 MIR4692 microRNA 4692 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4692 MicroRNAs 476 2011-05-02 2014-11-18 100616410 ENSG00000265064 uc021qmz.1 NR_039841 MI0017325 +HGNC:41818 MIR4693 microRNA 4693 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4693 MicroRNAs 476 2011-05-02 2014-11-18 100616457 ENSG00000264200 uc021qpj.1 NR_039842 MI0017326 +HGNC:41586 MIR4694 microRNA 4694 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4694 MicroRNAs 476 2011-05-02 2014-11-18 100616426 ENSG00000264309 uc021qex.1 NR_039843 MI0017327 +HGNC:41573 MIR4695 microRNA 4695 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4695 MicroRNAs 476 2011-05-02 2014-11-19 100616120 ENSG00000265606 uc021ohm.2 NR_039844 MI0017328 +HGNC:41780 MIR4696 microRNA 4696 non-coding RNA RNA, micro Approved 11 11 hsa-mir-4696 MicroRNAs 476 2011-05-02 2014-11-19 100616402 ENSG00000265902 uc021qnh.1 NR_039845 MI0017329 +HGNC:41570 MIR4697 microRNA 4697 non-coding RNA RNA, micro Approved 11q25 11q25 hsa-mir-4697 MicroRNAs 476 2011-05-02 2014-11-19 100616119 ENSG00000264919 uc058jgd.1 NR_039846 MI0017330 +HGNC:27448 MIR4697HG MIR4697 host gene non-coding RNA RNA, long non-coding Approved 11q25 11q25 LINC00947 long intergenic non-protein coding RNA 947 MIR4697 host gene (non-protein coding) 2013-05-31 2015-02-20 2015-02-20 283174 ENSG00000280237 OTTHUMG00000167122 NR_024344 +HGNC:41867 MIR4698 microRNA 4698 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4698 MicroRNAs 476 2011-05-02 2014-11-19 100616486 ENSG00000263838 uc021qxh.1 NR_039847 MI0017331 +HGNC:41636 MIR4699 microRNA 4699 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4699 MicroRNAs 476 2011-05-02 2014-11-18 100616133 ENSG00000265227 uc021rbd.1 NR_039848 MI0017332 +HGNC:41806 MIR4700 microRNA 4700 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4700 MicroRNAs 476 2011-05-02 2014-11-19 100616329 uc021rew.1 NR_039849 MI0017333 +HGNC:41627 MIR4701 microRNA 4701 non-coding RNA RNA, micro Approved 12 12 hsa-mir-4701 MicroRNAs 476 2011-05-02 2014-11-19 100616262 ENSG00000264201 uc021qxl.2 NR_039850 MI0017334 +HGNC:41817 MIR4703 microRNA 4703 non-coding RNA RNA, micro Approved 13 13 hsa-mir-4703 MicroRNAs 476 2011-05-02 2014-11-19 100616423 ENSG00000266611 uc021rju.1 NR_039852 MI0017336 +HGNC:41602 MIR4704 microRNA 4704 non-coding RNA RNA, micro Approved 13 13 hsa-mir-4704 MicroRNAs 476 2011-05-02 2014-11-18 100616205 ENSG00000263561 uc032ain.1 NR_039853 MI0017337 +HGNC:41567 MIR4705 microRNA 4705 non-coding RNA RNA, micro Approved 13 13 hsa-mir-4705 MicroRNAs 476 2011-05-02 2014-11-19 100616239 ENSG00000264482 uc021rmf.1 NR_039854 MI0017338 +HGNC:41576 MIR4706 microRNA 4706 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4706 MicroRNAs 476 2011-05-02 2014-11-19 100616490 ENSG00000266531 uc021ruu.1 NR_039855 MI0017339 +HGNC:41531 MIR4707 microRNA 4707 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4707 MicroRNAs 476 2011-05-02 2014-11-19 100616424 uc021rqu.1 NR_039856 MI0017340 +HGNC:41824 MIR4708 microRNA 4708 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4708 MicroRNAs 476 2011-05-02 2014-11-19 100616176 ENSG00000266740 uc021ruw.2 NR_039857 MI0017341 +HGNC:41690 MIR4709 microRNA 4709 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4709 MicroRNAs 476 2011-05-02 2014-11-19 100616211 uc021rwm.1 NR_039858 MI0017342 +HGNC:41727 MIR4710 microRNA 4710 non-coding RNA RNA, micro Approved 14 14 hsa-mir-4710 MicroRNAs 476 2011-05-02 2014-11-19 100616300 ENSG00000265291 uc021sek.1 NR_039860 MI0017344 +HGNC:41847 MIR4711 microRNA 4711 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4711 MicroRNAs 476 2011-05-02 2014-11-19 100616409 ENSG00000266150 uc021oob.1 NR_039861 MI0017345 +HGNC:41732 MIR4712 microRNA 4712 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4712 MicroRNAs 476 2011-05-02 2014-11-19 100616396 uc021skw.1 NR_039862 MI0017346 +HGNC:41899 MIR4713 microRNA 4713 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4713 MicroRNAs 476 2011-05-02 2014-11-19 100616369 ENSG00000266593 uc021slb.1 NR_039863 MI0017347 +HGNC:41763 MIR4714 microRNA 4714 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4714 MicroRNAs 476 2011-05-02 2014-11-19 100616432 ENSG00000264480 uc021sxh.1 NR_039864 MI0017348 +HGNC:41666 MIR4715 microRNA 4715 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4715 MicroRNAs 476 2011-05-02 2014-11-19 100616474 ENSG00000266517 uc021sgc.1 NR_039865 MI0017349 +HGNC:41812 MIR4716 microRNA 4716 non-coding RNA RNA, micro Approved 15 15 hsa-mir-4716 MicroRNAs 476 2011-05-02 2014-11-19 100616332 ENSG00000264210 uc021skt.1 NR_039866 MI0017350 +HGNC:41571 MIR4717 microRNA 4717 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4717 MicroRNAs 476 2011-05-02 2014-11-19 100616241 ENSG00000264004 uc021tau.1 NR_039868 MI0017352 +HGNC:41900 MIR4718 microRNA 4718 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4718 MicroRNAs 476 2011-05-02 2014-11-18 100616195 ENSG00000264733 uc021tdb.1 NR_039869 MI0017353 +HGNC:41807 MIR4719 microRNA 4719 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4719 MicroRNAs 476 2011-05-02 2014-11-19 100616172 ENSG00000266426 uc021tln.1 NR_039870 MI0017354 +HGNC:41705 MIR4720 microRNA 4720 non-coding RNA RNA, micro Approved 16q23.2 16q23.2 hsa-mir-4720 MicroRNAs 476 2011-05-02 2015-02-03 100616150 ENSG00000273048 uc021tls.1 NR_039871 MI0017355 +HGNC:41609 MIR4721 microRNA 4721 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4721 MicroRNAs 476 2011-05-02 2014-11-19 100616256 uc021tft.1 NR_039872 MI0017356 +HGNC:41782 MIR4722 microRNA 4722 non-coding RNA RNA, micro Approved 16 16 hsa-mir-4722 MicroRNAs 476 2011-05-02 2014-11-19 100616167 uc021tmp.1 NR_039873 MI0017357 +HGNC:41660 MIR4723 microRNA 4723 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4723 MicroRNAs 476 2011-05-02 2014-11-19 100616388 uc021ttq.2 NR_039875 MI0017359 +HGNC:41590 MIR4724 microRNA 4724 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4724 MicroRNAs 476 2011-05-02 2014-11-19 100616248 uc021tun.1 NR_039877 MI0017361 +HGNC:41608 MIR4725 microRNA 4725 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4725 MicroRNAs 476 2011-05-02 2014-11-19 100616449 ENSG00000265976 uc021tur.1 NR_039878 MI0017362 +HGNC:41722 MIR4726 microRNA 4726 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4726 MicroRNAs 476 2011-05-02 2014-11-19 100616153 ENSG00000273627 uc021twg.1 NR_039879 MI0017363 +HGNC:41709 MIR4727 microRNA 4727 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4727 MicroRNAs 476 2011-05-02 2014-11-19 100616416 ENSG00000274054 uc021twk.1 NR_039880 MI0017364 +HGNC:41632 MIR4728 microRNA 4728 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4728 MicroRNAs 476 2011-05-02 2014-11-19 100616132 ENSG00000265178 uc021twt.2 NR_039881 MI0017365 +HGNC:41585 MIR4729 microRNA 4729 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4729 MicroRNAs 476 2011-05-02 2014-11-19 100616204 ENSG00000263857 uc021uat.1 NR_039882 MI0017366 +HGNC:41880 MIR4730 microRNA 4730 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4730 MicroRNAs 476 2011-05-02 2014-11-19 100616359 ENSG00000264961 uc021uet.1 NR_039883 MI0017367 +HGNC:41597 MIR4731 microRNA 4731 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4731 MicroRNAs 476 2011-05-02 2014-11-19 100616125 ENSG00000265110 uc021tqk.1 NR_039884 MI0017368 +HGNC:41639 MIR4732 microRNA 4732 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4732 MicroRNAs 476 2011-05-02 2014-11-19 100616385 ENSG00000264066 uc021ttx.1 NR_039885 MI0017369 +HGNC:41638 MIR4733 microRNA 4733 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4733 MicroRNAs 476 2011-05-02 2014-11-19 100616266 ENSG00000265444 uc021tui.1 NR_039886 MI0017370 +HGNC:41572 MIR4734 microRNA 4734 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4734 MicroRNAs 476 2011-05-02 2014-11-19 100616203 ENSG00000275238 uc032glk.1 NR_039887 MI0017371 +HGNC:41888 MIR4735 microRNA 4735 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4735 MicroRNAs 476 2011-05-02 2014-11-19 100616363 ENSG00000265986 uc021pgs.1 NR_039888 MI0017372 +HGNC:41804 MIR4736 microRNA 4736 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4736 MicroRNAs 476 2011-05-02 2014-11-19 100616220 ENSG00000264399 uc021uap.1 NR_039889 MI0017373 +HGNC:41669 MIR4737 microRNA 4737 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4737 MicroRNAs 476 2011-05-02 2014-11-19 100616210 ENSG00000264049 uc021uba.1 NR_039890 MI0017374 +HGNC:41679 MIR4738 microRNA 4738 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4738 MicroRNAs 476 2011-05-02 2014-11-19 100616282 uc021udc.1 NR_039892 MI0017376 +HGNC:41801 MIR4739 microRNA 4739 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4739 MicroRNAs 476 2011-05-02 2014-11-19 100616170 ENSG00000266665 uc021uel.1 NR_039893 MI0017377 +HGNC:41711 MIR4740 microRNA 4740 non-coding RNA RNA, micro Approved 17 17 hsa-mir-4740 MicroRNAs 476 2011-05-02 2014-11-18 100616294 ENSG00000266392 uc021uez.1 NR_039894 MI0017378 +HGNC:41661 MIR4741 microRNA 4741 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4741 MicroRNAs 476 2011-05-02 2014-11-19 100616139 uc021uid.1 NR_039895 MI0017379 +HGNC:41565 MIR4742 microRNA 4742 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4742 MicroRNAs 476 2011-05-02 2014-11-19 100616468 ENSG00000266618 uc021pjq.1 NR_039896 MI0017380 +HGNC:41894 MIR4743 microRNA 4743 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4743 MicroRNAs 476 2011-05-02 2014-11-19 100616366 ENSG00000266276 NR_039897 MI0017381 +HGNC:41866 MIR4744 microRNA 4744 non-coding RNA RNA, micro Approved 18 18 hsa-mir-4744 MicroRNAs 476 2011-05-02 2014-11-19 100616420 ENSG00000263849 uc021ujs.1 NR_039898 MI0017382 +HGNC:41868 MIR4745 microRNA 4745 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4745 MicroRNAs 476 2011-05-02 2014-11-19 100616459 uc021uly.2 NR_039900 MI0017384 +HGNC:41904 MIR4746 microRNA 4746 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4746 MicroRNAs 476 2011-05-02 2014-11-19 100616371 ENSG00000266437 uc021und.1 NR_039901 MI0017385 +HGNC:41827 MIR4747 microRNA 4747 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4747 MicroRNAs 476 2011-05-02 2014-11-19 100616337 ENSG00000263409 uc021unk.1 NR_039902 MI0017386 +HGNC:41557 MIR4748 microRNA 4748 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4748 MicroRNAs 476 2011-05-02 2014-11-19 100616425 ENSG00000265879 uc021upa.1 NR_039903 MI0017387 +HGNC:41760 MIR4749 microRNA 4749 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4749 MicroRNAs 476 2011-05-02 2014-11-19 100616313 ENSG00000265954 uc021uxw.2 NR_039904 MI0017388 +HGNC:41765 MIR4750 microRNA 4750 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4750 MicroRNAs 476 2011-05-02 2014-11-19 100616314 uc021uxz.2 NR_039905 MI0017389 +HGNC:41819 MIR4751 microRNA 4751 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4751 MicroRNAs 476 2011-05-02 2014-11-19 100616483 uc021uyb.1 NR_039906 MI0017390 +HGNC:41803 MIR4752 microRNA 4752 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4752 MicroRNAs 476 2011-05-02 2014-11-19 100616171 ENSG00000264703 uc021vbj.1 NR_039907 MI0017391 +HGNC:41527 MIR4753 microRNA 4753 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4753 MicroRNAs 476 2011-05-02 2014-11-19 100616224 ENSG00000263439 uc021pkt.1 NR_039908 MI0017392 +HGNC:41786 MIR4754 microRNA 4754 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4754 MicroRNAs 476 2011-05-02 2014-11-18 100616168 ENSG00000266640 uc021vcy.1 NR_039910 MI0017394 +HGNC:41815 MIR4755 microRNA 4755 non-coding RNA RNA, micro Approved 20 20 hsa-mir-4755 MicroRNAs 476 2011-05-02 2014-11-19 100616434 ENSG00000264616 uc021wca.1 NR_039911 MI0017395 +HGNC:41529 MIR4756 microRNA 4756 non-coding RNA RNA, micro Approved 20 20 hsa-mir-4756 MicroRNAs 476 2011-05-02 2014-11-18 100616225 ENSG00000265595 uc021wey.1 NR_039913 MI0017397 +HGNC:41746 MIR4757 microRNA 4757 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4757 MicroRNAs 476 2011-05-02 2014-11-19 100616307 ENSG00000266738 uc021vek.1 NR_039914 MI0017398 +HGNC:41836 MIR4758 microRNA 4758 non-coding RNA RNA, micro Approved 20 20 hsa-mir-4758 MicroRNAs 476 2011-05-02 2014-11-19 100616340 uc021wfx.2 NR_039915 MI0017399 +HGNC:41575 MIR4759 microRNA 4759 non-coding RNA RNA, micro Approved 21 21 hsa-mir-4759 MicroRNAs 476 2011-05-02 2014-11-19 100616243 ENSG00000266133 uc021wic.1 NR_039916 MI0017400 +HGNC:41698 MIR4760 microRNA 4760 non-coding RNA RNA, micro Approved 21 21 hsa-mir-4760 MicroRNAs 476 2011-05-02 2014-11-19 100616148 ENSG00000263973 uc021wjk.1 NR_039917 MI0017401 +HGNC:41591 MIR4761 microRNA 4761 non-coding RNA RNA, micro Approved 22 22 hsa-mir-4761 MicroRNAs 476 2011-05-02 2014-11-19 100616414 uc021wln.1 NR_039918 MI0017402 +HGNC:41603 MIR4762 microRNA 4762 non-coding RNA RNA, micro Approved 22 22 hsa-mir-4762 MicroRNAs 476 2011-05-02 2014-11-19 100616253 ENSG00000264160 uc021wrl.1 NR_039919 MI0017403 +HGNC:41677 MIR4763 microRNA 4763 non-coding RNA RNA, micro Approved 22 22 hsa-mir-4763 MicroRNAs 476 2011-05-02 2014-11-18 100616143 uc021wrp.1 NR_039920 MI0017404 +HGNC:41714 MIR4764 microRNA 4764 non-coding RNA RNA, micro Approved 22 22 hsa-mir-4764 MicroRNAs 476 2011-05-02 2014-11-18 100616295 ENSG00000266012 uc021woh.1 NR_039921 MI0017405 +HGNC:41791 MIR4765 microRNA 4765 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4765 MicroRNAs 476 2011-05-02 2014-11-19 100616219 ENSG00000265057 uc021vfs.1 NR_039922 MI0017406 +HGNC:41680 MIR4766 microRNA 4766 non-coding RNA RNA, micro Approved 22 22 hsa-mir-4766 MicroRNAs 476 2011-05-02 2014-11-19 100616283 ENSG00000266594 uc021wqc.1 NR_039923 MI0017407 +HGNC:41548 MIR4767 microRNA 4767 non-coding RNA RNA, micro Approved X X hsa-mir-4767 MicroRNAs 476 2011-05-02 2014-11-19 100616467 ENSG00000264268 uc022bsh.1 NR_039924 MI0017408 +HGNC:41592 MIR4768 microRNA 4768 non-coding RNA RNA, micro Approved X X hsa-mir-4768 MicroRNAs 476 2011-05-02 2014-11-19 100616249 ENSG00000265465 uc022btk.1 NR_039925 MI0017409 +HGNC:41694 MIR4769 microRNA 4769 non-coding RNA RNA, micro Approved X X hsa-mir-4769 MicroRNAs 476 2011-05-02 2014-11-19 100616147 ENSG00000263858 uc022bvo.1 NR_039926 MI0017410 +HGNC:41542 MIR4770 microRNA 4770 non-coding RNA RNA, micro Approved X X hsa-mir-4770 MicroRNAs 476 2011-05-02 2014-11-18 100616373 ENSG00000265284 uc022bsf.1 NR_039927 MI0017411 +HGNC:41901 MIR4771-1 microRNA 4771-1 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4771-1 MicroRNAs 476 2011-05-02 2014-11-19 100616370 ENSG00000264793 uc032ntz.1 NR_039928 MI0017412 +HGNC:41774 MIR4771-2 microRNA 4771-2 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4771-2 MicroRNAs 476 2011-05-02 2014-11-19 100616165 ENSG00000266063 uc032nyo.1 NR_039929 MI0017413 +HGNC:41741 MIR4772 microRNA 4772 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4772 MicroRNAs 476 2011-05-02 2014-11-19 100616157 ENSG00000264764 uc021vlr.1 NR_039930 MI0017414 +HGNC:41699 MIR4773-1 microRNA 4773-1 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4773-1 MicroRNAs 476 2011-05-02 2014-11-18 100616392 ENSG00000264684 uc021vqz.1 NR_039931 MI0017415 +HGNC:41790 MIR4773-2 microRNA 4773-2 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4773-2 MicroRNAs 476 2011-05-02 2014-11-19 100616418 ENSG00000264684 NR_039932 MI0017416 +HGNC:41873 MIR4774 microRNA 4774 non-coding RNA RNA, micro Approved 2q24.3 02q24.3 hsa-mir-4774 MicroRNAs 476 2011-05-02 2014-11-18 100616356 ENSG00000265694 uc021vse.1 NR_039933 MI0017417 +HGNC:41885 MIR4775 microRNA 4775 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4775 MicroRNAs 476 2011-05-02 2014-11-19 100616361 uc021vvq.1 NR_039934 MI0017418 +HGNC:41641 MIR4776-1 microRNA 4776-1 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4776-1 MicroRNAs 476 2011-05-02 2014-11-18 100616267 ENSG00000266354 NR_039935 MI0017419 +HGNC:41631 MIR4776-2 microRNA 4776-2 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4776-2 MicroRNAs 476 2011-05-02 2014-11-18 100616472 ENSG00000266354 uc021vvz.1 NR_039936 MI0017420 +HGNC:41773 MIR4777 microRNA 4777 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4777 MicroRNAs 476 2011-05-02 2014-11-19 100616317 ENSG00000263641 uc021vyb.1 NR_039937 MI0017421 +HGNC:41648 MIR4778 microRNA 4778 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4778 MicroRNAs 476 2011-05-02 2014-11-19 100616464 ENSG00000264525 uc021vis.1 NR_039938 MI0017422 +HGNC:41747 MIR4779 microRNA 4779 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4779 MicroRNAs 476 2011-05-02 2014-11-19 100616159 ENSG00000265420 uc021vkd.1 NR_039939 MI0017423 +HGNC:41552 MIR4780 microRNA 4780 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4780 MicroRNAs 476 2011-05-02 2014-11-19 100616447 ENSG00000265003 uc021vkp.1 NR_039940 MI0017424 +HGNC:41769 MIR4781 microRNA 4781 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4781 MicroRNAs 476 2011-05-02 2014-11-19 100616315 uc021ons.1 NR_039942 MI0017426 +HGNC:41635 MIR4782 microRNA 4782 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4782 MicroRNAs 476 2011-05-02 2014-11-19 100616208 ENSG00000265429 NR_039943 MI0017427 +HGNC:41874 MIR4783 microRNA 4783 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4783 MicroRNAs 476 2011-05-02 2014-11-19 100616187 ENSG00000264075 uc021vno.1 NR_039944 MI0017428 +HGNC:41580 MIR4784 microRNA 4784 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4784 MicroRNAs 476 2011-05-02 2014-11-19 100616378 uc021vpp.1 NR_039945 MI0017429 +HGNC:41889 MIR4785 microRNA 4785 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4785 MicroRNAs 476 2011-05-02 2014-11-19 100616364 uc021vru.1 NR_039946 MI0017430 +HGNC:41751 MIR4786 microRNA 4786 non-coding RNA RNA, micro Approved 2 02 hsa-mir-4786 MicroRNAs 476 2011-05-02 2014-11-19 100616417 ENSG00000264279 uc021vzd.1 NR_039949 MI0017433 +HGNC:41653 MIR4787 microRNA 4787 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4787 MicroRNAs 476 2011-05-02 2014-11-19 100616138 ENSG00000272543 uc021wyr.1 NR_039950 MI0017434 +HGNC:41676 MIR4788 microRNA 4788 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4788 MicroRNAs 476 2011-05-02 2014-11-19 100616281 uc021xeh.1 NR_039951 MI0017435 +HGNC:41719 MIR4789 microRNA 4789 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4789 MicroRNAs 476 2011-05-02 2014-11-19 100616395 ENSG00000264974 uc021xhq.1 NR_039952 MI0017436 +HGNC:41820 MIR4790 microRNA 4790 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4790 MicroRNAs 476 2011-05-02 2014-11-19 100616334 ENSG00000265180 uc021wsm.1 NR_039953 MI0017437 +HGNC:41704 MIR4791 microRNA 4791 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4791 MicroRNAs 476 2011-05-02 2014-11-19 100616291 ENSG00000271898 uc021wtv.1 NR_039954 MI0017438 +HGNC:41577 MIR4792 microRNA 4792 non-coding RNA RNA, micro Approved 3 03 "hsa-mir-4792|miR-4792" MicroRNAs 476 2011-05-02 2014-11-19 100616448 ENSG00000265028 uc021wue.1 NR_039955 MI0017439 +HGNC:41538 MIR4793 microRNA 4793 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4793 MicroRNAs 476 2011-05-02 2014-11-19 100616112 uc021wxq.1 NR_039956 MI0017440 +HGNC:41829 MIR4794 microRNA 4794 non-coding RNA RNA, micro Approved 1 01 hsa-mir-4794 MicroRNAs 476 2011-05-02 2014-11-19 100616338 ENSG00000264470 uc021ooh.2 NR_039957 MI0017441 +HGNC:41757 MIR4795 microRNA 4795 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4795 MicroRNAs 476 2011-05-02 2014-11-19 100616161 ENSG00000264119 uc021xbb.1 NR_039958 MI0017442 +HGNC:41779 MIR4796 microRNA 4796 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4796 MicroRNAs 476 2011-05-02 2014-11-19 100616166 ENSG00000264623 NR_039959 MI0017443 +HGNC:41758 MIR4797 microRNA 4797 non-coding RNA RNA, micro Approved 3 03 hsa-mir-4797 MicroRNAs 476 2011-05-02 2014-11-18 100616216 ENSG00000265850 uc021xju.1 NR_039960 MI0017444 +HGNC:41616 MIR4798 microRNA 4798 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4798 MicroRNAs 476 2011-05-02 2014-11-19 100616471 ENSG00000264658 uc021xlf.1 NR_039961 MI0017445 +HGNC:41584 MIR4799 microRNA 4799 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4799 MicroRNAs 476 2011-05-02 2014-11-19 100616246 ENSG00000264274 uc021xso.1 NR_039962 MI0017446 +HGNC:41877 MIR4800 microRNA 4800 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4800 MicroRNAs 476 2011-05-02 2014-11-18 100616358 uc021xkp.1 NR_039964 MI0017448 +HGNC:41840 MIR4801 microRNA 4801 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4801 MicroRNAs 476 2011-05-02 2014-11-19 100616435 ENSG00000264319 uc021xnf.1 NR_039965 MI0017449 +HGNC:41658 MIR4802 microRNA 4802 non-coding RNA RNA, micro Approved 4 04 hsa-mir-4802 MicroRNAs 476 2011-05-02 2014-11-19 100616274 ENSG00000263642 uc021xns.1 NR_039966 MI0017450 +HGNC:41568 MIR4803 microRNA 4803 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4803 MicroRNAs 476 2011-05-02 2014-11-19 100616377 ENSG00000264099 uc021yak.1 NR_039967 MI0017451 +HGNC:41720 MIR4804 microRNA 4804 non-coding RNA RNA, micro Approved 5 05 hsa-mir-4804 MicroRNAs 476 2011-05-02 2014-11-19 100616152 ENSG00000263593 uc021yal.1 NR_039968 MI0017452 +HGNC:43494 MIR4999 microRNA 4999 non-coding RNA RNA, micro Approved 19 19 hsa-mir-4999 2011-11-14 2011-11-14 100847049 ENSG00000265390 uc021uoc.2 NR_049795 MI0017865 +HGNC:43464 MIR5000 microRNA 5000 non-coding RNA RNA, micro Approved 2 02 hsa-mir-5000 2011-11-14 2011-11-14 100846995 ENSG00000263909 uc031rok.1 NR_049796 MI0017866 +HGNC:43462 MIR5001 microRNA 5001 non-coding RNA RNA, micro Approved 2 02 hsa-mir-5001 2011-11-14 2011-11-14 100847037 uc061tpl.1 NR_049797 MI0017867 +HGNC:43470 MIR5002 microRNA 5002 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5002 2011-11-14 2011-11-14 100847021 ENSG00000266383 uc031sbn.1 NR_049798 MI0017868 +HGNC:43512 MIR5003 microRNA 5003 non-coding RNA RNA, micro Approved 5 05 hsa-mir-5003 2011-11-14 2011-11-14 100847029 ENSG00000265160 uc032vtl.1 NR_049799 MI0017869 +HGNC:43532 MIR5004 microRNA 5004 non-coding RNA RNA, micro Approved 6 06 hsa-mir-5004 2011-11-14 2011-11-14 100847012 uc031snz.1 NR_049800 MI0017870 +HGNC:43495 MIR5006 microRNA 5006 non-coding RNA RNA, micro Approved 13 13 hsa-mir-5006 2011-11-14 2011-11-14 100847026 uc031qli.1 NR_049803 MI0017873 +HGNC:43468 MIR5007 microRNA 5007 non-coding RNA RNA, micro Approved 13 13 hsa-mir-5007 2011-11-14 2011-11-14 100846996 ENSG00000264387 uc031qlv.1 NR_049804 MI0017874 +HGNC:43546 MIR5008 microRNA 5008 non-coding RNA RNA, micro Approved 1 01 hsa-mir-5008 2011-11-14 2011-11-14 100847072 ENSG00000264483 uc031psm.1 NR_049806 MI0017876 +HGNC:43458 MIR5009 microRNA 5009 non-coding RNA RNA, micro Approved 15 15 hsa-mir-5009 2011-11-14 2011-11-14 100846993 ENSG00000264796 uc032coz.1 NR_049807 MI0017877 +HGNC:43484 MIR5010 microRNA 5010 non-coding RNA RNA, micro Approved 17 17 hsa-mir-5010 2011-11-14 2011-11-14 100847046 uc031rak.1 NR_049808 MI0017878 +HGNC:43496 MIR5011 microRNA 5011 non-coding RNA RNA, micro Approved 18 18 hsa-mir-5011 2011-11-14 2011-11-14 100847002 ENSG00000263354 uc031riq.1 NR_049809 MI0017879 +HGNC:41834 MIR5047 microRNA 5047 non-coding RNA RNA, micro Approved 17 17 hsa-mir-5047 MicroRNAs 476 2011-05-02 2014-11-19 100616408 uc021ubs.1 NR_039969 MI0017932 +HGNC:43480 MIR5087 microRNA 5087 non-coding RNA RNA, micro Approved 1 01 hsa-mir-5087 2011-11-14 2011-11-14 100847044 ENSG00000283676 NR_049810 MI0017976 +HGNC:43489 MIR5088 microRNA 5088 non-coding RNA RNA, micro Approved 19 19 hsa-mir-5088 2011-11-14 2011-11-14 100847074 ENSG00000274306 uc031rme.2 NR_049811 MI0017977 +HGNC:43536 MIR5089 microRNA 5089 non-coding RNA RNA, micro Approved 17 17 hsa-mir-5089 2011-11-14 2011-11-14 100847067 ENSG00000264999 uc031rcy.1 NR_049812 MI0017978 +HGNC:43547 MIR5090 microRNA 5090 non-coding RNA RNA, micro Approved 7 07 hsa-mir-5090 2011-11-14 2011-11-14 100847073 uc031sys.1 NR_049813 MI0017979 +HGNC:43478 MIR5091 microRNA 5091 non-coding RNA RNA, micro Approved 4 04 hsa-mir-5091 2011-11-14 2011-11-14 100847023 ENSG00000266240 uc031sdt.1 NR_049814 MI0017980 +HGNC:43467 MIR5092 microRNA 5092 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5092 2011-11-14 2011-11-14 100847039 ENSG00000264986 uc031sbo.1 NR_049815 MI0017981 +HGNC:43474 MIR5093 microRNA 5093 non-coding RNA RNA, micro Approved 16 16 hsa-mir-5093 2011-11-14 2011-11-14 100847022 ENSG00000266307 uc031qxb.1 NR_049816 MI0017982 +HGNC:43519 MIR5094 microRNA 5094 non-coding RNA RNA, micro Approved 15 15 hsa-mir-5094 2011-11-14 2011-11-14 100847059 ENSG00000264966 uc031qto.1 NR_049817 MI0017983 +HGNC:41849 MIR5095 microRNA 5095 non-coding RNA RNA, micro Approved 1 01 hsa-mir-5095 MicroRNAs 476 2011-05-02 2014-11-19 100616458 ENSG00000266188 uc031uav.1 NR_039970 MI0018001 +HGNC:41611 MIR5096 microRNA 5096 non-coding RNA RNA, micro Approved 4 04 hsa-mir-5096 MicroRNAs 476 2011-05-02 2014-11-19 100616427 ENSG00000266270 uc032tne.1 NR_039973 MI0018004 +HGNC:43540 MIR5100 microRNA 5100 non-coding RNA RNA, micro Approved 10 10 hsa-mir-5100 2011-11-14 2011-11-14 100847014 ENSG00000263795 uc031pup.1 NR_049836 MI0019116 +HGNC:43459 MIR5186 microRNA 5186 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5186 2011-11-14 2011-11-14 100847036 ENSG00000264330 uc031sby.1 NR_049818 MI0018165 +HGNC:43523 MIR5187 microRNA 5187 non-coding RNA RNA, micro Approved 1 01 hsa-mir-5187 2011-11-14 2011-11-14 100847090 uc031pqw.1 NR_049819 MI0018166 +HGNC:43502 MIR5188 microRNA 5188 non-coding RNA RNA, micro Approved 12 12 hsa-mir-5188 2011-11-14 2011-11-14 100847004 ENSG00000265345 uc031qkf.1 NR_049820 MI0018167 +HGNC:43515 MIR5189 microRNA 5189 non-coding RNA RNA, micro Approved 16 16 hsa-mir-5189 2011-11-14 2011-11-14 100847057 ENSG00000263456 uc031qxh.1 NR_049821 MI0018168 +HGNC:43549 MIR5190 microRNA 5190 non-coding RNA RNA, micro Approved 18 18 hsa-mir-5190 2011-11-14 2011-11-14 100847080 ENSG00000266146 uc031rho.1 NR_049822 MI0018169 +HGNC:43497 MIR5191 microRNA 5191 non-coding RNA RNA, micro Approved 1 01 hsa-mir-5191 2011-11-14 2011-11-14 100847050 ENSG00000264802 uc031prn.1 NR_049823 MI0018170 +HGNC:43473 MIR5192 microRNA 5192 non-coding RNA RNA, micro Approved 2 02 hsa-mir-5192 2011-11-14 2011-11-14 100847087 ENSG00000266097 uc031rod.1 NR_049824 MI0018171 +HGNC:43534 MIR5193 microRNA 5193 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5193 2011-11-14 2011-11-14 100847079 uc031rzu.1 NR_049825 MI0018172 +HGNC:43498 MIR5194 microRNA 5194 non-coding RNA RNA, micro Approved 8 08 hsa-mir-5194 2011-11-14 2011-11-14 100847051 ENSG00000264653 uc031tcj.1 NR_049826 MI0018173 +HGNC:43526 MIR5195 microRNA 5195 non-coding RNA RNA, micro Approved 14 14 hsa-mir-5195 2011-11-14 2011-11-14 100847062 ENSG00000265929 uc059ghl.1 NR_049827 MI0018174 +HGNC:43542 MIR5196 microRNA 5196 non-coding RNA RNA, micro Approved 19 19 hsa-mir-5196 2011-11-14 2011-11-14 100847070 uc031rkh.1 NR_049828 MI0018175 +HGNC:43450 MIR5197 microRNA 5197 non-coding RNA RNA, micro Approved 5 05 hsa-mir-5197 2011-11-14 2011-11-14 100846991 ENSG00000266478 uc031slq.1 NR_049829 MI0018176 +HGNC:43513 MIR5571 microRNA 5571 non-coding RNA RNA, micro Approved 22 22 hsa-mir-5571 2011-11-14 2011-11-14 100847006 ENSG00000264824 uc062cdv.1 NR_049835 MI0019115 +HGNC:43476 MIR5572 microRNA 5572 non-coding RNA RNA, micro Approved 15 15 hsa-mir-5572 2011-11-14 2011-11-14 100847042 uc032clc.1 NR_049837 MI0019117 +HGNC:43485 MIR5579 microRNA 5579 non-coding RNA RNA, micro Approved 11 11 hsa-mir-5579 2011-11-14 2011-11-14 100847000 ENSG00000266570 uc031qcz.1 NR_049841 MI0019133 +HGNC:43482 MIR5580 microRNA 5580 non-coding RNA RNA, micro Approved 14 14 hsa-mir-5580 2011-11-14 2011-11-14 100847076 ENSG00000266431 uc031qop.1 NR_049843 MI0019135 +HGNC:43527 MIR5581 microRNA 5581 non-coding RNA RNA, micro Approved 1 01 hsa-mir-5581 2011-11-14 2011-11-14 100847010 ENSG00000263675 uc031pma.1 NR_049844 MI0019136 +HGNC:43461 MIR5582 microRNA 5582 non-coding RNA RNA, micro Approved 11 11 hsa-mir-5582 2011-11-14 2011-11-14 100847020 ENSG00000263540 uc031qay.1 NR_049846 MI0019138 +HGNC:43491 MIR5583-1 microRNA 5583-1 non-coding RNA RNA, micro Approved 18 18 hsa-mir-5583-1 2011-11-14 2011-11-14 100847025 ENSG00000266148 NR_049847 MI0019139 +HGNC:43471 MIR5583-2 microRNA 5583-2 non-coding RNA RNA, micro Approved 18 18 hsa-mir-5583-2 2011-11-14 2011-11-14 100846997 ENSG00000283645 uc031rib.1 NR_049848 MI0019140 +HGNC:43507 MIR5584 microRNA 5584 non-coding RNA RNA, micro Approved 1p34.1 01p34.1 hsa-mir-5584 2011-11-14 2014-11-14 100847089 ENSG00000263381 uc031pmh.1 NR_049849 MI0019141 +HGNC:43452 MIR5585 microRNA 5585 non-coding RNA RNA, micro Approved 1p35.2 01p35.2 hsa-mir-5585 2011-11-14 2014-11-14 100847018 ENSG00000266203 uc031twd.1 NR_049850 MI0019142 +HGNC:43493 MIR5586 microRNA 5586 non-coding RNA RNA, micro Approved 14 14 hsa-mir-5586 2011-11-14 2011-11-14 100847088 ENSG00000263629 uc032bdg.1 NR_049851 MI0019143 +HGNC:43508 MIR5587 microRNA 5587 non-coding RNA RNA, micro Approved 16 16 hsa-mir-5587 2011-11-14 2011-11-14 100847028 ENSG00000266124 uc031qun.1 NR_049852 MI0019144 +HGNC:43505 MIR5588 microRNA 5588 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5588 2011-11-14 2011-11-14 100847054 ENSG00000264614 uc032smm.1 NR_106712 MI0019147 +HGNC:43514 MIR5589 microRNA 5589 non-coding RNA RNA, micro Approved 19 19 hsa-mir-5589 2011-11-14 2011-11-14 100847093 ENSG00000266204 uc032hmm.1 NR_049855 MI0019148 +HGNC:43541 MIR5590 microRNA 5590 non-coding RNA RNA, micro Approved 2 02 hsa-mir-5590 2011-11-14 2011-11-14 100847069 ENSG00000263783 uc032ocw.1 NR_049856 MI0019150 +HGNC:43531 MIR5591 microRNA 5591 non-coding RNA RNA, micro Approved 4 04 hsa-mir-5591 2011-11-14 2011-11-14 100847065 ENSG00000264621 uc032tge.1 NR_049857 MI0019151 +HGNC:43492 MIR5680 microRNA 5680 non-coding RNA RNA, micro Approved 8 08 hsa-mir-5680 2011-11-14 2011-11-14 100847001 ENSG00000266756 uc031tbw.1 NR_049859 MI0019280 +HGNC:43518 MIR5681A microRNA 5681a non-coding RNA RNA, micro Approved 8 08 hsa-mir-5681a 2011-11-14 2013-02-12 100847058 ENSG00000266502 uc031tbl.1 NR_049860 MI0019281 +HGNC:43538 MIR5681B microRNA 5681b non-coding RNA RNA, micro Approved 8 08 hsa-mir-5681b 2011-11-14 2011-11-14 100847091 ENSG00000283505 NR_049871 MI0019293 +HGNC:43477 MIR5682 microRNA 5682 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5682 2011-11-14 2011-11-14 100847043 ENSG00000264477 uc032ryw.1 NR_049861 MI0019282 +HGNC:43453 MIR5683 microRNA 5683 non-coding RNA RNA, micro Approved 6 06 hsa-mir-5683 2011-11-14 2011-11-14 100847034 ENSG00000283616 NR_049863 MI0019284 +HGNC:43544 MIR5684 microRNA 5684 non-coding RNA RNA, micro Approved 19 19 hsa-mir-5684 2011-11-14 2011-11-14 100847071 ENSG00000263800 uc032hni.1 NR_049864 MI0019285 +HGNC:43543 MIR5685 microRNA 5685 non-coding RNA RNA, micro Approved 6 06 hsa-mir-5685 2011-11-14 2011-11-14 100847075 ENSG00000264056 uc031sow.1 NR_049866 MI0019287 +HGNC:43529 MIR5686 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-03-17 MI0019290 +HGNC:43457 MIR5687 microRNA 5687 non-coding RNA RNA, micro Approved 5 05 hsa-mir-5687 2011-11-14 2011-11-14 100847019 ENSG00000265135 uc031sjj.1 NR_049869 MI0019291 +HGNC:43463 MIR5688 microRNA 5688 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5688 2011-11-14 2011-11-14 100847077 ENSG00000264084 uc031sap.1 NR_049870 MI0019292 +HGNC:43479 MIR5689 microRNA 5689 non-coding RNA RNA, micro Approved 6 06 hsa-mir-5689 2011-11-14 2011-11-14 100846998 ENSG00000263705 uc031smr.1 NR_049872 MI0019294 +HGNC:52007 MIR5689HG MIR5689 host gene non-coding RNA RNA, long non-coding Approved 6p24.3 06p24.3 2015-10-15 2015-10-15 106660610 ENSG00000229401 OTTHUMG00000014234 NR_132993 +HGNC:43490 MIR5690 microRNA 5690 non-coding RNA RNA, micro Approved 6 06 hsa-mir-5690 2011-11-14 2011-11-14 100847048 ENSG00000265527 uc031son.1 NR_049873 MI0019295 +HGNC:43545 MIR5691 microRNA 5691 non-coding RNA RNA, micro Approved 11 11 hsa-mir-5691 2011-11-14 2011-11-14 100847015 ENSG00000264984 uc031pyz.1 NR_049874 MI0019296 +HGNC:43533 MIR5692A1 microRNA 5692a-1 non-coding RNA RNA, micro Approved 7 07 hsa-mir-5692a-1 2011-11-14 2011-11-14 100847066 ENSG00000266318 uc032zyn.1 NR_049875 MI0019297 +HGNC:43466 MIR5692A2 microRNA 5692a-2 non-coding RNA RNA, micro Approved 8 08 hsa-mir-5692a-2 2011-11-14 2011-11-14 100847038 ENSG00000264512 uc033bcx.1 NR_049876 MI0019298 +HGNC:43535 MIR5692B microRNA 5692b non-coding RNA RNA, micro Approved 21 21 hsa-mir-5692b 2011-11-14 2011-11-14 100847013 ENSG00000264580 uc032qah.1 NR_049889 MI0019311 +HGNC:43506 MIR5692C1 microRNA 5692c-1 non-coding RNA RNA, micro Approved 5 05 hsa-mir-5692c-1 2011-11-14 2011-11-14 100847082 ENSG00000265924 uc032vlu.1 NR_049867 MI0019288 +HGNC:43448 MIR5692C2 microRNA 5692c-2 non-coding RNA RNA, micro Approved 7 07 hsa-mir-5692c-2 2011-11-14 2011-11-14 100847017 ENSG00000266668 uc032zyo.1 NR_049868 MI0019289 +HGNC:43499 MIR5693 microRNA 5693 non-coding RNA RNA, micro Approved 13 13 hsa-mir-5693 2011-11-14 2011-11-14 100847003 ENSG00000266072 uc031qls.1 NR_049878 MI0019300 +HGNC:43530 MIR5694 microRNA 5694 non-coding RNA RNA, micro Approved 14 14 hsa-mir-5694 2011-11-14 2011-11-14 100847064 ENSG00000265993 uc032bez.1 NR_049879 MI0019301 +HGNC:43548 MIR5695 microRNA 5695 non-coding RNA RNA, micro Approved 19 19 hsa-mir-5695 2011-11-14 2011-11-14 100847016 ENSG00000266721 uc032hnk.1 NR_049880 MI0019302 +HGNC:43516 MIR5696 microRNA 5696 non-coding RNA RNA, micro Approved 2 02 hsa-mir-5696 2011-11-14 2011-11-14 100847007 ENSG00000264857 uc031roo.1 NR_049881 MI0019303 +HGNC:43509 MIR5697 microRNA 5697 non-coding RNA RNA, micro Approved 1p36.22 01p36.22 hsa-mir-5697 2011-11-14 2014-11-14 100847055 ENSG00000265521 uc031toc.1 NR_049882 MI0019304 +HGNC:43487 MIR5698 microRNA 5698 non-coding RNA RNA, micro Approved 1q21.3 01q21.3 hsa-mir-5698 2011-11-14 2014-11-14 100847024 ENSG00000263987 uc031uzx.1 NR_049883 MI0019305 +HGNC:43456 MIR5699 microRNA 5699 non-coding RNA RNA, micro Approved 10 10 hsa-mir-5699 2011-11-14 2011-11-14 100847086 ENSG00000263511 uc010qaa.2 NR_049884 MI0019306 +HGNC:43521 MIR5700 microRNA 5700 non-coding RNA RNA, micro Approved 12 12 hsa-mir-5700 2011-11-14 2011-11-14 100847031 ENSG00000266099 uc031qjd.1 NR_049885 MI0019307 +HGNC:43522 MIR5701-1 microRNA 5701-1 non-coding RNA RNA, micro Approved 15 15 hsa-mir-5701-1 2011-11-14 2011-11-14 100847060 ENSG00000266545 uc032buc.1 NR_049886 MI0019308 +HGNC:43510 MIR5701-2 microRNA 5701-2 non-coding RNA RNA, micro Approved 15 15 hsa-mir-5701-2 2011-11-14 2011-11-14 100847005 ENSG00000277841 uc032dbc.1 NR_049895 MI0019593 +HGNC:50844 MIR5701-3 microRNA 5701-3 non-coding RNA RNA, micro Approved 15 15 MicroRNAs 476 2014-06-26 2014-06-26 103504741 ENSG00000264902 NR_128721 MI0031522 +HGNC:43503 MIR5702 microRNA 5702 non-coding RNA RNA, micro Approved 2 02 hsa-mir-5702 2011-11-14 2011-11-14 100847053 ENSG00000263363 uc031rrm.1 NR_049887 MI0019309 +HGNC:43475 MIR5703 microRNA 5703 non-coding RNA RNA, micro Approved 2 02 hsa-mir-5703 2011-11-14 2011-11-14 100847081 uc031rrr.1 NR_049888 MI0019310 +HGNC:43469 MIR5704 microRNA 5704 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5704 2011-11-14 2011-11-14 100847040 ENSG00000265859 uc031sbt.1 NR_049890 MI0019312 +HGNC:43504 MIR5705 microRNA 5705 non-coding RNA RNA, micro Approved 4 04 hsa-mir-5705 2011-11-14 2011-11-14 100847027 ENSG00000263981 uc031sfz.1 NR_049891 MI0019313 +HGNC:43500 MIR5706 microRNA 5706 non-coding RNA RNA, micro Approved 5 05 hsa-mir-5706 2011-11-14 2011-11-14 100847085 ENSG00000264536 uc032vil.1 NR_049892 MI0019314 +HGNC:43449 MIR5707 microRNA 5707 non-coding RNA RNA, micro Approved 7 07 hsa-mir-5707 2011-11-14 2011-11-14 100847032 ENSG00000265598 uc031szv.1 NR_049893 MI0019315 +HGNC:43511 MIR5708 microRNA 5708 non-coding RNA RNA, micro Approved 8 08 hsa-mir-5708 2011-11-14 2011-11-14 100847056 ENSG00000265588 uc031tbo.1 NR_049894 MI0019316 +HGNC:49977 MIR5739 microRNA 5739 non-coding RNA RNA, micro Approved 22 22 hsa-mir-5739 MicroRNAs 476 2014-03-24 2014-11-18 102466081 ENSG00000276162 NR_106713 MI0019412 +HGNC:49930 MIR5787 microRNA 5787 non-coding RNA RNA, micro Approved 3 03 hsa-mir-5787 MicroRNAs 476 2014-03-24 2014-11-19 102464817 ENSG00000275334 NR_106714 MI0019797 +HGNC:50261 MIR6068 microRNA 6068 non-coding RNA RNA, micro Approved 1p31.3 01p31.3 hsa-mir-6068 MicroRNAs 476 2014-03-24 2014-11-19 102464823 ENSG00000275836 NR_106716 MI0020345 +HGNC:50124 MIR6069 microRNA 6069 non-coding RNA RNA, micro Approved 22 22 hsa-mir-6069 MicroRNAs 476 2014-03-24 2014-11-18 102464824 ENSG00000274280 NR_106717 MI0020346 +HGNC:49950 MIR6070 microRNA 6070 non-coding RNA RNA, micro Approved 21 21 hsa-mir-6070 MicroRNAs 476 2014-03-24 2014-11-18 102464825 ENSG00000278433 NR_106718 MI0020347 +HGNC:50229 MIR6071 microRNA 6071 non-coding RNA RNA, micro Approved 2 02 hsa-mir-6071 MicroRNAs 476 2014-03-24 2014-11-18 102466516 ENSG00000278783 NR_106719 MI0020348 +HGNC:50144 MIR6072 microRNA 6072 non-coding RNA RNA, micro Approved 10 10 hsa-mir-6072 MicroRNAs 476 2014-03-24 2014-11-18 102465944 ENSG00000278069 NR_106720 MI0020349 +HGNC:50128 MIR6073 microRNA 6073 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6073 MicroRNAs 476 2014-03-24 2014-11-18 102464826 NR_106721 MI0020350 +HGNC:50060 MIR6074 microRNA 6074 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6074 MicroRNAs 476 2014-03-24 2014-11-19 102464827 ENSG00000276878 NR_106722 MI0020351 +HGNC:50198 MIR6075 microRNA 6075 non-coding RNA RNA, micro Approved 5 05 hsa-mir-6075 MicroRNAs 476 2014-03-24 2014-11-18 102466103 ENSG00000273742 NR_106723 MI0020352 +HGNC:50232 MIR6076 microRNA 6076 non-coding RNA RNA, micro Approved 14 14 hsa-mir-6076 MicroRNAs 476 2014-03-24 2014-11-18 102464828 ENSG00000278038 NR_106724 MI0020353 +HGNC:50025 MIR6077 microRNA 6077 non-coding RNA RNA, micro Approved 1q21.2 01q21.2 "hsa-mir-6077-1|hsa-mir-6077-2" "MIR6077-2|MIR6077-1" "microRNA 6077-2|microRNA 6077-1" MicroRNAs 476 2014-03-24 2014-04-29 2014-04-29 2014-11-19 102466225 ENSG00000278596 NR_106967 MI0020354 +HGNC:50136 MIR6078 microRNA 6078 non-coding RNA RNA, micro Approved 10 10 hsa-mir-6078 MicroRNAs 476 2014-03-24 2014-11-18 102464829 ENSG00000274809 NR_106726 MI0020355 +HGNC:50114 MIR6079 microRNA 6079 non-coding RNA RNA, micro Approved 1p34.1 01p34.1 hsa-mir-6079 MicroRNAs 476 2014-03-24 2014-11-19 102464830 ENSG00000283477 NR_106727 MI0020356 +HGNC:50142 MIR6080 microRNA 6080 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6080 MicroRNAs 476 2014-03-24 2014-11-18 102464831 ENSG00000278581 NR_106728 MI0020357 +HGNC:50151 MIR6081 microRNA 6081 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6081 MicroRNAs 476 2014-03-24 2014-11-19 102466518 ENSG00000274115 NR_106729 MI0020358 +HGNC:49984 MIR6082 microRNA 6082 non-coding RNA RNA, micro Approved 4 04 hsa-mir-6082 MicroRNAs 476 2014-03-24 2014-11-18 102466953 ENSG00000278502 NR_106730 MI0020359 +HGNC:50076 MIR6083 microRNA 6083 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6083 MicroRNAs 476 2014-03-24 2014-11-18 102464832 ENSG00000276656 NR_106731 MI0020360 +HGNC:50235 MIR6084 microRNA 6084 non-coding RNA RNA, micro Approved 1p36.12 01p36.12 hsa-mir-6084 MicroRNAs 476 2014-03-24 2014-11-19 102464833 ENSG00000273695 NR_106732 MI0020361 +HGNC:50002 MIR6085 microRNA 6085 non-coding RNA RNA, micro Approved 15 15 hsa-mir-6085 MicroRNAs 476 2014-03-24 2014-11-19 102464834 ENSG00000275451 NR_106733 MI0020362 +HGNC:49986 MIR6086 microRNA 6086 non-coding RNA RNA, micro Approved X X hsa-mir-6086 MicroRNAs 476 2014-03-24 2014-11-19 102466519 ENSG00000283493 NR_106734 MI0020363 +HGNC:50045 MIR6087 microRNA 6087 non-coding RNA RNA, micro Approved X X hsa-mir-6087 MicroRNAs 476 2014-03-24 2014-11-19 102464835 ENSG00000275110 NR_106735 MI0020364 +HGNC:50164 MIR6088 microRNA 6088 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6088 MicroRNAs 476 2014-03-24 2014-11-18 102464836 ENSG00000275726 NR_106736 MI0020365 +HGNC:50179 MIR6089 microRNA 6089 non-coding RNA RNA, micro Approved Xp22.3 and Yp11.3 Xp22.3 and Yp11.3 hsa-mir-6089-1 "MIR6089-1|MIR6089-2" "microRNA 6089-1|microRNA 6089-2" "MicroRNAs|Pseudoautosomal region 1" "476|715" 2014-03-24 2014-06-26 2014-06-26 2014-11-18 102464837 ENSG00000277120 NR_106737 MI0020366 +HGNC:50204 MIR6090 microRNA 6090 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6090 MicroRNAs 476 2014-03-24 2014-11-19 102466104 ENSG00000276176 NR_106738 MI0020367 +HGNC:50200 MIR6124 microRNA 6124 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6124 MicroRNAs 476 2014-03-24 2014-11-18 102466906 ENSG00000275373 NR_106739 MI0021258 +HGNC:49931 MIR6125 microRNA 6125 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6125 MicroRNAs 476 2014-03-24 2014-11-19 102465133 NR_106740 MI0021259 +HGNC:50099 MIR6126 microRNA 6126 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6126 MicroRNAs 476 2014-03-24 2014-11-18 102465134 ENSG00000273776 NR_106741 MI0021260 +HGNC:50163 MIR6127 microRNA 6127 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6127 MicroRNAs 476 2014-03-24 2014-11-19 102466615 ENSG00000276835 NR_106742 MI0021271 +HGNC:50109 MIR6128 microRNA 6128 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6128 MicroRNAs 476 2014-03-24 2014-11-19 102465135 ENSG00000274770 NR_106743 MI0021272 +HGNC:50220 MIR6129 microRNA 6129 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6129 MicroRNAs 476 2014-03-24 2014-11-19 102465137 ENSG00000273500 NR_106745 MI0021274 +HGNC:50156 MIR6130 microRNA 6130 non-coding RNA RNA, micro Approved 21 21 hsa-mir-6130 MicroRNAs 476 2014-03-24 2014-11-19 102466967 ENSG00000275469 NR_106746 MI0021275 +HGNC:49929 MIR6131 microRNA 6131 non-coding RNA RNA, micro Approved 5 05 hsa-mir-6131 MicroRNAs 476 2014-03-24 2014-11-18 102465138 ENSG00000277073 NR_106747 MI0021276 +HGNC:50272 MIR6132 microRNA 6132 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6132 MicroRNAs 476 2014-03-24 2014-11-18 102466616 NR_106748 MI0021277 +HGNC:50007 MIR6133 microRNA 6133 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6133 MicroRNAs 476 2014-03-24 2014-11-19 102465139 ENSG00000276137 NR_106749 MI0021278 +HGNC:49951 MIR6134 microRNA 6134 non-coding RNA RNA, micro Approved X X hsa-mir-6134 MicroRNAs 476 2014-03-24 2014-11-19 102465140 ENSG00000277569 NR_106750 MI0021279 +HGNC:50197 MIR6165 microRNA 6165 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6165 MicroRNAs 476 2014-03-24 2014-11-18 102465141 ENSG00000277478 NR_106751 MI0021472 +HGNC:49962 MIR6499 microRNA 6499 non-coding RNA RNA, micro Approved 5 05 hsa-mir-6499 MicroRNAs 476 2014-03-24 2014-11-18 102465246 ENSG00000276622 NR_106752 MI0022209 +HGNC:49935 MIR6500 microRNA 6500 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6500 MicroRNAs 476 2014-03-24 2014-11-18 102466656 ENSG00000275816 NR_106754 MI0022211 +HGNC:50033 MIR6501 microRNA 6501 non-coding RNA RNA, micro Approved 21 21 hsa-mir-6501 MicroRNAs 476 2014-03-24 2014-11-18 102465248 NR_106756 MI0022213 +HGNC:50062 MIR6502 microRNA 6502 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6502 MicroRNAs 476 2014-03-24 2014-11-19 102465249 NR_106757 MI0022214 +HGNC:49968 MIR6503 microRNA 6503 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6503 MicroRNAs 476 2014-03-24 2014-11-18 102465250 ENSG00000275344 NR_106758 MI0022215 +HGNC:49976 MIR6504 microRNA 6504 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6504 MicroRNAs 476 2014-03-24 2014-11-19 102465251 ENSG00000275109 NR_106759 MI0022216 +HGNC:50104 MIR6505 microRNA 6505 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6505 MicroRNAs 476 2014-03-24 2014-11-18 102466657 ENSG00000275770 NR_106760 MI0022217 +HGNC:50158 MIR6506 microRNA 6506 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6506 MicroRNAs 476 2014-03-24 2014-11-18 102465252 NR_106761 MI0022218 +HGNC:50199 MIR6507 microRNA 6507 non-coding RNA RNA, micro Approved 10 10 hsa-mir-6507 MicroRNAs 476 2014-03-24 2014-11-19 102465253 ENSG00000274056 NR_106762 MI0022219 +HGNC:50217 MIR6508 microRNA 6508 non-coding RNA RNA, micro Approved 21 21 hsa-mir-6508 MicroRNAs 476 2014-03-24 2014-11-19 102466972 ENSG00000275523 NR_106763 MI0022220 +HGNC:50207 MIR6509 microRNA 6509 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6509 MicroRNAs 476 2014-03-24 2014-11-19 102465254 ENSG00000277138 NR_106764 MI0022221 +HGNC:50101 MIR6510 microRNA 6510 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6510 MicroRNAs 476 2014-03-24 2014-11-18 102466658 NR_106765 MI0022222 +HGNC:50119 MIR6511A1 microRNA 6511a-1 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6511a-1 MicroRNAs 476 2014-03-24 2014-11-19 102466268 ENSG00000275259 NR_106766 MI0022223 +HGNC:50150 MIR6511A2 microRNA 6511a-2 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6511a-2 MicroRNAs 476 2014-03-24 2014-11-19 102466812 ENSG00000278221 NR_106969 MI0023564 +HGNC:50265 MIR6511A3 microRNA 6511a-3 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6511a-3 MicroRNAs 476 2014-03-24 2014-11-19 102465683 ENSG00000276311 NR_106970 MI0023565 +HGNC:50188 MIR6511A4 microRNA 6511a-4 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6511a-4 MicroRNAs 476 2014-03-24 2014-11-19 102465684 ENSG00000273613 NR_106971 MI0023566 +HGNC:50228 MIR6511B1 microRNA 6511b-1 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6511b-1 MicroRNAs 476 2014-03-24 2014-11-18 102465429 NR_106775 MI0022552 +HGNC:50230 MIR6511B2 microRNA 6511b-2 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6511b-2 MicroRNAs 476 2014-03-24 2014-11-19 102465985 ENSG00000283346 NR_106965 MI0023431 +HGNC:50259 MIR6512 microRNA 6512 non-coding RNA RNA, micro Approved 2 02 hsa-mir-6512 MicroRNAs 476 2014-03-24 2014-11-19 102465255 ENSG00000278418 NR_106767 MI0022224 +HGNC:50247 MIR6513 microRNA 6513 non-coding RNA RNA, micro Approved 2 02 hsa-mir-6513 MicroRNAs 476 2014-03-24 2014-11-18 102465256 NR_106768 MI0022225 +HGNC:50147 MIR6514 microRNA 6514 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6514 MicroRNAs 476 2014-03-24 2014-11-18 102465257 ENSG00000274066 NR_106769 MI0022226 +HGNC:50227 MIR6515 microRNA 6515 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6515 MicroRNAs 476 2014-03-24 2014-11-19 102466659 ENSG00000274417 NR_106770 MI0022227 +HGNC:50233 MIR6516 microRNA 6516 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6516 MicroRNAs 476 2014-03-24 2014-11-19 102466864 NR_106997 MI0025513 +HGNC:49996 MIR6715A microRNA 6715a non-coding RNA RNA, micro Approved 10 10 hsa-mir-6715a MicroRNAs 476 2014-03-24 2014-11-18 102466189 ENSG00000276857 NR_106771 MI0022548 +HGNC:50249 MIR6715B microRNA 6715b non-coding RNA RNA, micro Approved 10 10 hsa-mir-6715b MicroRNAs 476 2014-03-24 2014-11-19 102465427 ENSG00000283688 NR_106772 MI0022549 +HGNC:50048 MIR6716 microRNA 6716 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6716 MicroRNAs 476 2014-03-24 2014-11-18 102466719 NR_106773 MI0022550 +HGNC:50000 MIR6717 microRNA 6717 non-coding RNA RNA, micro Approved 14 14 hsa-mir-6717 MicroRNAs 476 2014-03-24 2014-11-18 102465428 NR_106774 MI0022551 +HGNC:50195 MIR6718 microRNA 6718 non-coding RNA RNA, micro Approved 18 18 hsa-mir-6718 MicroRNAs 476 2014-03-24 2014-11-18 102465430 ENSG00000275518 NR_106776 MI0022553 +HGNC:50012 MIR6719 microRNA 6719 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6719 MicroRNAs 476 2014-03-24 2014-11-18 102465974 ENSG00000277759 NR_106777 MI0022554 +HGNC:50032 MIR6720 microRNA 6720 non-coding RNA RNA, micro Approved 6 06 hsa-mir-6720 MicroRNAs 476 2014-03-24 2014-11-19 102466720 ENSG00000275859 NR_106778 MI0022555 +HGNC:50049 MIR6721 microRNA 6721 non-coding RNA RNA, micro Approved 6 06 hsa-mir-6721 MicroRNAs 476 2014-03-24 2014-11-18 102466190 NR_106779 MI0022556 +HGNC:49927 MIR6722 microRNA 6722 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6722 MicroRNAs 476 2014-03-24 2014-11-18 102465431 ENSG00000278756 NR_106780 MI0022557 +HGNC:50152 MIR6723 microRNA 6723 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6723 MicroRNAs 476 2014-03-24 2014-11-18 102465432 ENSG00000278791 NR_106781 MI0022558 +HGNC:50837 MIR6724-1 microRNA 6724-1 non-coding RNA RNA, micro Approved 21 21 MicroRNAs 476 2014-06-26 2014-06-26 102465433 ENSG00000275950 NR_106782 MI0022559 +HGNC:50832 MIR6724-2 microRNA 6724-2 non-coding RNA RNA, micro Approved 21 21 MicroRNAs 476 2014-06-26 2014-06-26 103504727 ENSG00000274060 NR_128715 MI0031516 +HGNC:50842 MIR6724-3 microRNA 6724-3 non-coding RNA RNA, micro Approved 21 21 MicroRNAs 476 2014-06-26 2014-06-26 103504739 ENSG00000277379 NR_128716 MI0031517 +HGNC:50830 MIR6724-4 microRNA 6724-4 non-coding RNA RNA, micro Approved 21 21 MicroRNAs 476 2014-06-26 2014-06-26 103504733 ENSG00000275692 NR_128717 MI0031518 +HGNC:50009 MIR6726 microRNA 6726 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6726 MicroRNAs 476 2014-03-24 2014-11-18 102465434 ENSG00000278073 NR_106784 MI0022571 +HGNC:50171 MIR6727 microRNA 6727 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6727 MicroRNAs 476 2014-03-24 2014-11-18 102465435 NR_106785 MI0022572 +HGNC:49961 MIR6728 microRNA 6728 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6728 MicroRNAs 476 2014-03-24 2014-11-18 102465436 ENSG00000274258 NR_106786 MI0022573 +HGNC:50103 MIR6729 microRNA 6729 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6729 MicroRNAs 476 2014-03-24 2014-11-19 102466982 ENSG00000276869 NR_106787 MI0022574 +HGNC:50222 MIR6730 microRNA 6730 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6730 MicroRNAs 476 2014-03-24 2014-11-19 102466722 ENSG00000276830 NR_106788 MI0022575 +HGNC:50036 MIR6731 microRNA 6731 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6731 MicroRNAs 476 2014-03-24 2014-11-19 102465437 ENSG00000278034 NR_106789 MI0022576 +HGNC:50066 MIR6732 microRNA 6732 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6732 MicroRNAs 476 2014-03-24 2014-11-19 102465438 NR_106790 MI0022577 +HGNC:50239 MIR6733 microRNA 6733 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6733 MicroRNAs 476 2014-03-24 2014-11-19 102465439 NR_106791 MI0022578 +HGNC:50219 MIR6734 microRNA 6734 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6734 MicroRNAs 476 2014-03-24 2014-11-18 102466723 NR_106792 MI0022579 +HGNC:50126 MIR6735 microRNA 6735 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6735 MicroRNAs 476 2014-03-24 2014-11-18 102465440 ENSG00000274975 NR_106793 MI0022580 +HGNC:50072 MIR6736 microRNA 6736 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6736 MicroRNAs 476 2014-03-24 2014-11-19 102466191 ENSG00000278549 NR_106794 MI0022581 +HGNC:50273 MIR6737 microRNA 6737 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6737 MicroRNAs 476 2014-03-24 2014-11-19 102465441 ENSG00000276584 NR_106795 MI0022582 +HGNC:49939 MIR6738 microRNA 6738 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6738 MicroRNAs 476 2014-03-24 2014-11-19 102465442 ENSG00000277817 NR_106796 MI0022583 +HGNC:50165 MIR6739 microRNA 6739 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6739 MicroRNAs 476 2014-03-24 2014-11-18 102466724 ENSG00000277681 NR_106797 MI0022584 +HGNC:50082 MIR6740 microRNA 6740 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6740 MicroRNAs 476 2014-03-24 2014-11-18 102465443 ENSG00000275207 NR_106798 MI0022585 +HGNC:50004 MIR6741 microRNA 6741 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6741 MicroRNAs 476 2014-03-24 2014-11-18 102466270 NR_106799 MI0022586 +HGNC:50090 MIR6742 microRNA 6742 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6742 MicroRNAs 476 2014-03-24 2014-11-18 102465444 NR_106800 MI0022587 +HGNC:50008 MIR6743 microRNA 6743 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6743 MicroRNAs 476 2014-03-24 2014-11-18 102465445 NR_106801 MI0022588 +HGNC:50051 MIR6744 microRNA 6744 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6744 MicroRNAs 476 2014-03-24 2014-11-19 102466725 ENSG00000275669 NR_106802 MI0022589 +HGNC:50106 MIR6745 microRNA 6745 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6745 MicroRNAs 476 2014-03-24 2014-11-18 102466726 ENSG00000275208 NR_106803 MI0022590 +HGNC:49925 MIR6746 microRNA 6746 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6746 MicroRNAs 476 2014-03-24 2014-11-19 102465446 ENSG00000277892 NR_106804 MI0022591 +HGNC:50027 MIR6747 microRNA 6747 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6747 MicroRNAs 476 2014-03-24 2014-11-18 102465447 ENSG00000276102 NR_106805 MI0022592 +HGNC:50141 MIR6748 microRNA 6748 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6748 MicroRNAs 476 2014-03-24 2014-11-18 102465448 NR_106806 MI0022593 +HGNC:50087 MIR6749 microRNA 6749 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6749 MicroRNAs 476 2014-03-24 2014-11-18 102466727 ENSG00000274314 NR_106807 MI0022594 +HGNC:49965 MIR6750 microRNA 6750 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6750 MicroRNAs 476 2014-03-24 2014-11-18 102466192 ENSG00000274986 NR_106808 MI0022595 +HGNC:49983 MIR6751 microRNA 6751 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6751 MicroRNAs 476 2014-03-24 2014-11-18 102465449 NR_106809 MI0022596 +HGNC:50020 MIR6752 microRNA 6752 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6752 MicroRNAs 476 2014-03-24 2014-11-18 102465450 ENSG00000276769 NR_106810 MI0022597 +HGNC:50255 MIR6753 microRNA 6753 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6753 MicroRNAs 476 2014-03-24 2014-11-18 102465451 ENSG00000275022 NR_106811 MI0022598 +HGNC:50203 MIR6754 microRNA 6754 non-coding RNA RNA, micro Approved 11q13.4 11q13.4 hsa-mir-6754 MicroRNAs 476 2014-03-24 2015-07-22 102466728 ENSG00000278349 NR_106812 MI0022599 +HGNC:50224 MIR6755 microRNA 6755 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6755 MicroRNAs 476 2014-03-24 2014-11-19 102465452 NR_106813 MI0022600 +HGNC:49974 MIR6756 microRNA 6756 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6756 MicroRNAs 476 2014-03-24 2014-11-18 102465453 NR_106814 MI0022601 +HGNC:50160 MIR6757 microRNA 6757 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6757 MicroRNAs 476 2014-03-24 2014-11-18 102466193 ENSG00000278108 NR_106815 MI0022602 +HGNC:50038 MIR6758 microRNA 6758 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6758 MicroRNAs 476 2014-03-24 2014-11-19 102465454 NR_106816 MI0022603 +HGNC:50063 MIR6759 microRNA 6759 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6759 MicroRNAs 476 2014-03-24 2014-11-18 102466729 ENSG00000283621 NR_106817 MI0022604 +HGNC:49955 MIR6760 microRNA 6760 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6760 MicroRNAs 476 2014-03-24 2014-11-18 102465455 ENSG00000273700 NR_106818 MI0022605 +HGNC:49949 MIR6761 microRNA 6761 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6761 MicroRNAs 476 2014-03-24 2014-11-18 102465456 ENSG00000274697 NR_106819 MI0022606 +HGNC:50168 MIR6762 microRNA 6762 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6762 MicroRNAs 476 2014-03-24 2014-11-18 102465457 ENSG00000274822 NR_106820 MI0022607 +HGNC:50139 MIR6763 microRNA 6763 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6763 MicroRNAs 476 2014-03-24 2014-11-19 102465975 ENSG00000277052 NR_106821 MI0022608 +HGNC:49994 MIR6764 microRNA 6764 non-coding RNA RNA, micro Approved 14 14 hsa-mir-6764 MicroRNAs 476 2014-03-24 2014-11-19 102466730 NR_106822 MI0022609 +HGNC:50030 MIR6765 microRNA 6765 non-coding RNA RNA, micro Approved 14 14 hsa-mir-6765 MicroRNAs 476 2014-03-24 2014-11-19 102465458 ENSG00000273778 NR_106823 MI0022610 +HGNC:49941 MIR6766 microRNA 6766 non-coding RNA RNA, micro Approved 15 15 hsa-mir-6766 MicroRNAs 476 2014-03-24 2014-11-18 102466983 ENSG00000275101 NR_106824 MI0022611 +HGNC:50133 MIR6767 microRNA 6767 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6767 MicroRNAs 476 2014-03-24 2014-11-18 102465459 ENSG00000283180 NR_106825 MI0022612 +HGNC:50264 MIR6768 microRNA 6768 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6768 MicroRNAs 476 2014-03-24 2014-11-19 102465460 ENSG00000274805 NR_106826 MI0022613 +HGNC:50079 MIR6769A microRNA 6769a non-coding RNA RNA, micro Approved 16 16 hsa-mir-6769a MicroRNAs 476 2014-03-24 2014-11-18 102466731 ENSG00000276641 NR_106827 MI0022614 +HGNC:50016 MIR6769B microRNA 6769b non-coding RNA RNA, micro Approved 1 01 hsa-mir-6769b MicroRNAs 476 2014-03-24 2014-11-19 102466202 ENSG00000278465 NR_106919 MI0022706 +HGNC:50223 MIR6770-1 microRNA 6770-1 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6770-1 MicroRNAs 476 2014-03-24 2014-11-19 102465461 ENSG00000278265 NR_106828 MI0022615 +HGNC:50115 MIR6770-2 microRNA 6770-2 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6770-2 MicroRNAs 476 2014-03-24 2014-11-18 102465908 ENSG00000277698 NR_107060 MI0026418 +HGNC:50034 MIR6770-3 microRNA 6770-3 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6770-3 MicroRNAs 476 2014-03-24 2014-11-19 102466259 ENSG00000275391 NR_107061 MI0026419 +HGNC:50212 MIR6771 microRNA 6771 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6771 MicroRNAs 476 2014-03-24 2014-11-19 102465462 ENSG00000274969 NR_106829 MI0022616 +HGNC:50064 MIR6772 microRNA 6772 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6772 MicroRNAs 476 2014-03-24 2014-11-19 102465463 ENSG00000274816 NR_106830 MI0022617 +HGNC:50132 MIR6773 microRNA 6773 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6773 MicroRNAs 476 2014-03-24 2014-11-18 102466194 NR_106831 MI0022618 +HGNC:50202 MIR6774 microRNA 6774 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6774 MicroRNAs 476 2014-03-24 2014-11-18 102466732 ENSG00000274134 NR_106832 MI0022619 +HGNC:50100 MIR6775 microRNA 6775 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6775 MicroRNAs 476 2014-03-24 2014-11-19 102465464 ENSG00000278598 NR_106833 MI0022620 +HGNC:50193 MIR6776 microRNA 6776 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6776 MicroRNAs 476 2014-03-24 2014-11-18 102465465 ENSG00000273606 NR_106834 MI0022621 +HGNC:50173 MIR6777 microRNA 6777 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6777 MicroRNAs 476 2014-03-24 2014-11-18 102465466 ENSG00000274111 NR_106835 MI0022622 +HGNC:50183 MIR6778 microRNA 6778 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6778 MicroRNAs 476 2014-03-24 2014-11-19 102466733 NR_106836 MI0022623 +HGNC:50148 MIR6779 microRNA 6779 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6779 MicroRNAs 476 2014-03-24 2014-11-19 102465467 ENSG00000277057 NR_106837 MI0022624 +HGNC:50069 MIR6780A microRNA 6780a non-coding RNA RNA, micro Approved 17 17 hsa-mir-6780a MicroRNAs 476 2014-03-24 2014-11-18 102466195 ENSG00000275273 NR_106838 MI0022625 +HGNC:50237 MIR6780B microRNA 6780b non-coding RNA RNA, micro Approved 6 06 hsa-mir-6780b MicroRNAs 476 2014-03-24 2014-11-18 102466746 ENSG00000276770 NR_106894 MI0022681 +HGNC:50185 MIR6781 microRNA 6781 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6781 MicroRNAs 476 2014-03-24 2014-11-18 102465468 ENSG00000278447 NR_106839 MI0022626 +HGNC:50270 MIR6782 microRNA 6782 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6782 MicroRNAs 476 2014-03-24 2014-11-19 102465469 ENSG00000275107 NR_106840 MI0022627 +HGNC:50159 MIR6783 microRNA 6783 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6783 MicroRNAs 476 2014-03-24 2014-11-18 102466734 ENSG00000278223 NR_106841 MI0022628 +HGNC:49988 MIR6784 microRNA 6784 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6784 MicroRNAs 476 2014-03-24 2014-11-19 102465470 ENSG00000277249 NR_106842 MI0022629 +HGNC:50206 MIR6785 microRNA 6785 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6785 MicroRNAs 476 2014-03-24 2014-11-18 102466911 NR_106843 MI0022630 +HGNC:49970 MIR6786 microRNA 6786 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6786 MicroRNAs 476 2014-03-24 2014-11-18 102465471 ENSG00000277784 NR_106844 MI0022631 +HGNC:50209 MIR6787 microRNA 6787 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6787 MicroRNAs 476 2014-03-24 2014-11-19 102465472 NR_106845 MI0022632 +HGNC:50078 MIR6788 microRNA 6788 non-coding RNA RNA, micro Approved 18 18 hsa-mir-6788 MicroRNAs 476 2014-03-24 2014-11-19 102466735 ENSG00000274838 NR_106846 MI0022633 +HGNC:50094 MIR6789 microRNA 6789 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6789 MicroRNAs 476 2014-03-24 2014-11-18 102466736 NR_106847 MI0022634 +HGNC:50161 MIR6790 microRNA 6790 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6790 MicroRNAs 476 2014-03-24 2014-11-18 102465473 ENSG00000273758 NR_106848 MI0022635 +HGNC:50097 MIR6791 microRNA 6791 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6791 MicroRNAs 476 2014-03-24 2014-11-18 102465474 NR_106849 MI0022636 +HGNC:50054 MIR6792 microRNA 6792 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6792 MicroRNAs 476 2014-03-24 2014-11-19 102465475 ENSG00000273657 NR_106850 MI0022637 +HGNC:50251 MIR6793 microRNA 6793 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6793 MicroRNAs 476 2014-03-24 2014-11-19 102466737 ENSG00000275640 NR_106851 MI0022638 +HGNC:50117 MIR6794 microRNA 6794 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6794 MicroRNAs 476 2014-03-24 2014-11-18 102466196 ENSG00000276181 NR_106852 MI0022639 +HGNC:50031 MIR6795 microRNA 6795 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6795 MicroRNAs 476 2014-03-24 2014-11-19 102465476 ENSG00000275711 NR_106853 MI0022640 +HGNC:50186 MIR6796 microRNA 6796 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6796 MicroRNAs 476 2014-03-24 2014-11-18 102465477 ENSG00000275652 NR_106854 MI0022641 +HGNC:50169 MIR6797 microRNA 6797 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6797 MicroRNAs 476 2014-03-24 2014-11-19 102465478 ENSG00000276926 NR_106855 MI0022642 +HGNC:50013 MIR6798 microRNA 6798 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6798 MicroRNAs 476 2014-03-24 2014-11-18 102466738 ENSG00000273898 NR_106856 MI0022643 +HGNC:50162 MIR6799 microRNA 6799 non-coding RNA RNA, micro Approved 19q13.33 19q13.33 hsa-mir-6799 MicroRNAs 476 2014-03-24 2014-11-19 102465479 ENSG00000276270 NR_106857 MI0022644 +HGNC:50042 MIR6800 microRNA 6800 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6800 MicroRNAs 476 2014-03-24 2014-11-18 102465480 NR_106858 MI0022645 +HGNC:50178 MIR6801 microRNA 6801 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6801 MicroRNAs 476 2014-03-24 2014-11-19 102466984 ENSG00000274380 NR_106859 MI0022646 +HGNC:50154 MIR6802 microRNA 6802 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6802 MicroRNAs 476 2014-03-24 2014-11-18 102465481 ENSG00000278328 NR_106860 MI0022647 +HGNC:50035 MIR6803 microRNA 6803 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6803 MicroRNAs 476 2014-03-24 2014-11-18 102466739 ENSG00000278264 NR_106861 MI0022648 +HGNC:50253 MIR6804 microRNA 6804 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6804 MicroRNAs 476 2014-03-24 2014-11-19 102465482 ENSG00000275519 NR_106862 MI0022649 +HGNC:50215 MIR6805 microRNA 6805 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6805 MicroRNAs 476 2014-03-24 2014-11-19 102465483 NR_106863 MI0022650 +HGNC:49937 MIR6806 microRNA 6806 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6806 MicroRNAs 476 2014-03-24 2014-11-19 102465484 ENSG00000277588 NR_106864 MI0022651 +HGNC:50191 MIR6807 microRNA 6807 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6807 MicroRNAs 476 2014-03-24 2014-11-18 102465976 ENSG00000275924 NR_106865 MI0022652 +HGNC:50046 MIR6808 microRNA 6808 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6808 MicroRNAs 476 2014-03-24 2014-11-18 102466740 NR_106866 MI0022653 +HGNC:49926 MIR6809 microRNA 6809 non-coding RNA RNA, micro Approved 2 02 hsa-mir-6809 MicroRNAs 476 2014-03-24 2014-11-19 102465485 ENSG00000275458 NR_106867 MI0022654 +HGNC:49987 MIR6810 microRNA 6810 non-coding RNA RNA, micro Approved 2 02 hsa-mir-6810 MicroRNAs 476 2014-03-24 2014-11-19 102466197 ENSG00000278524 NR_106868 MI0022655 +HGNC:49944 MIR6811 microRNA 6811 non-coding RNA RNA, micro Approved 2 02 hsa-mir-6811 MicroRNAs 476 2014-03-24 2014-11-18 102465486 ENSG00000277842 NR_106869 MI0022656 +HGNC:50116 MIR6812 microRNA 6812 non-coding RNA RNA, micro Approved 20q13.12 20q13.12 hsa-mir-6812 MicroRNAs 476 2014-03-24 2015-02-16 102465487 ENSG00000273555 NR_106870 MI0022657 +HGNC:50017 MIR6813 microRNA 6813 non-coding RNA RNA, micro Approved 20 20 hsa-mir-6813 MicroRNAs 476 2014-03-24 2014-11-18 102466741 ENSG00000274034 NR_106871 MI0022658 +HGNC:50145 MIR6814 microRNA 6814 non-coding RNA RNA, micro Approved 21 21 hsa-mir-6814 MicroRNAs 476 2014-03-24 2014-11-18 102465488 ENSG00000275166 NR_106872 MI0022659 +HGNC:50225 MIR6815 microRNA 6815 non-coding RNA RNA, micro Approved 21 21 hsa-mir-6815 MicroRNAs 476 2014-03-24 2014-11-18 102465489 ENSG00000275167 NR_106873 MI0022660 +HGNC:50256 MIR6816 microRNA 6816 non-coding RNA RNA, micro Approved 22 22 hsa-mir-6816 MicroRNAs 476 2014-03-24 2014-11-19 102465490 ENSG00000278278 NR_106874 MI0022661 +HGNC:50112 MIR6817 microRNA 6817 non-coding RNA RNA, micro Approved 22 22 hsa-mir-6817 MicroRNAs 476 2014-03-24 2014-11-19 102466198 ENSG00000277872 NR_106875 MI0022662 +HGNC:49940 MIR6818 microRNA 6818 non-coding RNA RNA, micro Approved 22 22 hsa-mir-6818 MicroRNAs 476 2014-03-24 2014-11-18 102466742 ENSG00000275818 NR_106876 MI0022663 +HGNC:50155 MIR6819 microRNA 6819 non-coding RNA RNA, micro Approved 22 22 hsa-mir-6819 MicroRNAs 476 2014-03-24 2014-11-18 102465491 ENSG00000278420 NR_106877 MI0022664 +HGNC:50095 MIR6820 microRNA 6820 non-coding RNA RNA, micro Approved 22 22 hsa-mir-6820 MicroRNAs 476 2014-03-24 2014-11-18 102465492 ENSG00000279010 NR_106878 MI0022665 +HGNC:49980 MIR6821 microRNA 6821 non-coding RNA RNA, micro Approved 22 22 hsa-mir-6821 MicroRNAs 476 2014-03-24 2014-11-18 102465493 ENSG00000276753 NR_106879 MI0022666 +HGNC:49999 MIR6822 microRNA 6822 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6822 MicroRNAs 476 2014-03-24 2014-11-19 102466743 NR_106880 MI0022667 +HGNC:49952 MIR6823 microRNA 6823 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6823 MicroRNAs 476 2014-03-24 2014-11-19 102465494 ENSG00000278799 NR_106881 MI0022668 +HGNC:49946 MIR6824 microRNA 6824 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6824 MicroRNAs 476 2014-03-24 2014-11-18 102465495 NR_106882 MI0022669 +HGNC:50208 MIR6825 microRNA 6825 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6825 MicroRNAs 476 2014-03-24 2014-11-18 102466199 ENSG00000275067 NR_106883 MI0022670 +HGNC:50001 MIR6826 microRNA 6826 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6826 MicroRNAs 476 2014-03-24 2014-11-19 102465496 ENSG00000278658 NR_106884 MI0022671 +HGNC:50234 MIR6827 microRNA 6827 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6827 MicroRNAs 476 2014-03-24 2014-11-18 102466744 ENSG00000277723 NR_106885 MI0022672 +HGNC:50057 MIR6828 microRNA 6828 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6828 MicroRNAs 476 2014-03-24 2014-11-18 102465497 ENSG00000283474 NR_106886 MI0022673 +HGNC:50055 MIR6829 microRNA 6829 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6829 MicroRNAs 476 2014-03-24 2014-11-19 102465977 ENSG00000276489 NR_106887 MI0022674 +HGNC:49966 MIR6830 microRNA 6830 non-coding RNA RNA, micro Approved 5 05 hsa-mir-6830 MicroRNAs 476 2014-03-24 2014-11-18 102465498 ENSG00000283678 NR_106888 MI0022675 +HGNC:49936 MIR6831 microRNA 6831 non-coding RNA RNA, micro Approved 5 05 hsa-mir-6831 MicroRNAs 476 2014-03-24 2014-11-18 102465499 NR_106889 MI0022676 +HGNC:50140 MIR6832 microRNA 6832 non-coding RNA RNA, micro Approved 6 06 hsa-mir-6832 MicroRNAs 476 2014-03-24 2014-11-19 102466745 ENSG00000274494 NR_106890 MI0022677 +HGNC:50245 MIR6833 microRNA 6833 non-coding RNA RNA, micro Approved 6 06 hsa-mir-6833 MicroRNAs 476 2014-03-24 2014-11-19 102465500 ENSG00000277264 NR_106891 MI0022678 +HGNC:50108 MIR6834 microRNA 6834 non-coding RNA RNA, micro Approved 6p21.32 06p21.32 hsa-mir-6834 MicroRNAs 476 2014-03-24 2015-02-09 102465501 ENSG00000275010 NR_106892 MI0022679 +HGNC:49963 MIR6835 microRNA 6835 non-coding RNA RNA, micro Approved 6 06 hsa-mir-6835 MicroRNAs 476 2014-03-24 2014-11-19 102465502 ENSG00000276404 NR_106893 MI0022680 +HGNC:50067 MIR6836 microRNA 6836 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6836 MicroRNAs 476 2014-03-24 2014-11-19 102465503 NR_106895 MI0022682 +HGNC:50125 MIR6837 microRNA 6837 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6837 MicroRNAs 476 2014-03-24 2014-11-18 102466985 NR_106896 MI0022683 +HGNC:50050 MIR6838 microRNA 6838 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6838 MicroRNAs 476 2014-03-24 2014-11-19 102465504 NR_106897 MI0022684 +HGNC:49953 MIR6839 microRNA 6839 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6839 MicroRNAs 476 2014-03-24 2014-11-18 102465505 ENSG00000275667 NR_106898 MI0022685 +HGNC:50138 MIR6840 microRNA 6840 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6840 MicroRNAs 476 2014-03-24 2014-11-18 102466747 NR_106899 MI0022686 +HGNC:50070 MIR6841 microRNA 6841 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6841 MicroRNAs 476 2014-03-24 2014-11-18 102465506 ENSG00000283327 NR_106900 MI0022687 +HGNC:50254 MIR6842 microRNA 6842 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6842 MicroRNAs 476 2014-03-24 2014-11-18 102465507 ENSG00000273836 NR_106901 MI0022688 +HGNC:50240 MIR6843 microRNA 6843 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6843 MicroRNAs 476 2014-03-24 2014-11-18 102465508 NR_106902 MI0022689 +HGNC:50135 MIR6844 microRNA 6844 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6844 MicroRNAs 476 2014-03-24 2014-11-18 102466200 NR_106903 MI0022690 +HGNC:49956 MIR6845 microRNA 6845 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6845 MicroRNAs 476 2014-03-24 2014-11-19 102466748 NR_106904 MI0022691 +HGNC:50026 MIR6846 microRNA 6846 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6846 MicroRNAs 476 2014-03-24 2014-11-18 102465509 ENSG00000277888 NR_106905 MI0022692 +HGNC:50022 MIR6847 microRNA 6847 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6847 MicroRNAs 476 2014-03-24 2014-11-18 102465510 NR_106906 MI0022693 +HGNC:50176 MIR6848 microRNA 6848 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6848 MicroRNAs 476 2014-03-24 2014-11-19 102465511 NR_106907 MI0022694 +HGNC:49991 MIR6849 microRNA 6849 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6849 MicroRNAs 476 2014-03-24 2014-11-18 102466749 NR_106908 MI0022695 +HGNC:50093 MIR6850 microRNA 6850 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6850 MicroRNAs 476 2014-03-24 2014-11-19 102465978 NR_106909 MI0022696 +HGNC:50083 MIR6851 microRNA 6851 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6851 MicroRNAs 476 2014-03-24 2014-11-18 102465512 ENSG00000275651 NR_106910 MI0022697 +HGNC:49993 MIR6852 microRNA 6852 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6852 MicroRNAs 476 2014-03-24 2014-11-18 102465513 NR_106911 MI0022698 +HGNC:49945 MIR6853 microRNA 6853 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6853 MicroRNAs 476 2014-03-24 2014-11-18 102466201 ENSG00000273945 NR_106912 MI0022699 +HGNC:50084 MIR6854 microRNA 6854 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6854 MicroRNAs 476 2014-03-24 2014-11-18 102465514 ENSG00000278412 NR_106913 MI0022700 +HGNC:50061 MIR6855 microRNA 6855 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6855 MicroRNAs 476 2014-03-24 2014-11-18 102466750 ENSG00000276124 NR_106914 MI0022701 +HGNC:50242 MIR6856 microRNA 6856 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6856 MicroRNAs 476 2014-03-24 2014-11-18 102465515 ENSG00000277713 NR_106915 MI0022702 +HGNC:50263 MIR6857 microRNA 6857 non-coding RNA RNA, micro Approved X X hsa-mir-6857 MicroRNAs 476 2014-03-24 2014-11-18 102465516 ENSG00000278204 NR_106916 MI0022703 +HGNC:50250 MIR6858 microRNA 6858 non-coding RNA RNA, micro Approved X X hsa-mir-6858 MicroRNAs 476 2014-03-24 2014-11-18 102465517 ENSG00000276350 NR_106917 MI0022704 +HGNC:50039 MIR6859-1 microRNA 6859-1 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6859-1 MicroRNAs 476 2014-03-24 2014-11-18 102466751 ENSG00000278267 NR_106918 MI0022705 +HGNC:49954 MIR6859-2 microRNA 6859-2 non-coding RNA RNA, micro Approved 1p36.33 01p36.33 hsa-mir-6859-2 MicroRNAs 476 2014-03-24 2015-07-30 102465909 ENSG00000273874 NR_107062 MI0026420 +HGNC:50248 MIR6859-3 microRNA 6859-3 non-coding RNA RNA, micro Approved 15q26.3 15q26.3 hsa-mir-6859-3 MicroRNAs 476 2014-03-24 2015-07-30 102465910 ENSG00000275449 NR_107063 MI0026421 +HGNC:50840 MIR6859-4 microRNA 6859-4 non-coding RNA RNA, micro Approved 16 16 MicroRNAs 476 2014-06-26 2014-06-26 103504738 ENSG00000278739 NR_128720 MI0031521 +HGNC:50086 MIR6860 microRNA 6860 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6860 MicroRNAs 476 2014-03-24 2014-11-18 102465518 ENSG00000283326 NR_106920 MI0022707 +HGNC:50129 MIR6861 microRNA 6861 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6861 MicroRNAs 476 2014-03-24 2014-11-19 102465519 NR_106921 MI0022708 +HGNC:50052 MIR6862-1 microRNA 6862-1 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6862-1 MicroRNAs 476 2014-03-24 2014-11-19 102465520 ENSG00000275429 NR_106922 MI0022709 +HGNC:50192 MIR6862-2 microRNA 6862-2 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6862-2 MicroRNAs 476 2014-03-24 2014-11-19 102465907 ENSG00000278340 NR_107058 MI0026415 +HGNC:49942 MIR6863 microRNA 6863 non-coding RNA RNA, micro Approved 16 16 hsa-mir-6863 MicroRNAs 476 2014-03-24 2014-11-18 102466752 ENSG00000283471 NR_106923 MI0022710 +HGNC:50226 MIR6864 microRNA 6864 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6864 MicroRNAs 476 2014-03-24 2014-11-18 102465521 ENSG00000274300 NR_106924 MI0022711 +HGNC:50182 MIR6865 microRNA 6865 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6865 MicroRNAs 476 2014-03-24 2014-11-18 102465522 ENSG00000278517 NR_106925 MI0022712 +HGNC:49932 MIR6866 microRNA 6866 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6866 MicroRNAs 476 2014-03-24 2014-11-19 102466986 NR_106926 MI0022713 +HGNC:50134 MIR6867 microRNA 6867 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6867 MicroRNAs 476 2014-03-24 2014-11-18 102465523 ENSG00000274621 NR_106927 MI0022714 +HGNC:50096 MIR6868 microRNA 6868 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6868 MicroRNAs 476 2014-03-24 2014-11-19 102466753 ENSG00000275360 NR_106928 MI0022715 +HGNC:50056 MIR6869 microRNA 6869 non-coding RNA RNA, micro Approved 20 20 hsa-mir-6869 MicroRNAs 476 2014-03-24 2014-11-18 102465524 NR_106929 MI0022716 +HGNC:50184 MIR6870 microRNA 6870 non-coding RNA RNA, micro Approved 20 20 hsa-mir-6870 MicroRNAs 476 2014-03-24 2014-11-18 102465525 ENSG00000273745 NR_106930 MI0022717 +HGNC:49964 MIR6871 microRNA 6871 non-coding RNA RNA, micro Approved 20 20 hsa-mir-6871 MicroRNAs 476 2014-03-24 2014-11-19 102466912 ENSG00000276169 NR_106931 MI0022718 +HGNC:50037 MIR6872 microRNA 6872 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6872 MicroRNAs 476 2014-03-24 2014-11-18 102465526 NR_106932 MI0022719 +HGNC:50231 MIR6873 microRNA 6873 non-coding RNA RNA, micro Approved 6 06 hsa-mir-6873 MicroRNAs 476 2014-03-24 2014-11-19 102466754 NR_106933 MI0022720 +HGNC:50146 MIR6874 microRNA 6874 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6874 MicroRNAs 476 2014-03-24 2014-11-18 102466203 ENSG00000283419 NR_106934 MI0022721 +HGNC:50015 MIR6875 microRNA 6875 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6875 MicroRNAs 476 2014-03-24 2014-11-19 102466755 NR_106935 MI0022722 +HGNC:50181 MIR6876 microRNA 6876 non-coding RNA RNA, micro Approved 8 08 hsa-mir-6876 MicroRNAs 476 2014-03-24 2014-11-18 102465527 ENSG00000274988 NR_106936 MI0022723 +HGNC:50205 MIR6877 microRNA 6877 non-coding RNA RNA, micro Approved 9 09 hsa-mir-6877 MicroRNAs 476 2014-03-24 2014-11-18 102465528 ENSG00000273932 NR_106937 MI0022724 +HGNC:50269 MIR6878 microRNA 6878 non-coding RNA RNA, micro Approved 1 01 hsa-mir-6878 MicroRNAs 476 2014-03-24 2014-11-18 102465529 NR_106938 MI0022725 +HGNC:49957 MIR6879 microRNA 6879 non-coding RNA RNA, micro Approved 11 11 hsa-mir-6879 MicroRNAs 476 2014-03-24 2014-11-18 102466756 ENSG00000278851 NR_106939 MI0022726 +HGNC:50187 MIR6880 microRNA 6880 non-coding RNA RNA, micro Approved 12 12 hsa-mir-6880 MicroRNAs 476 2014-03-24 2014-11-18 102466204 ENSG00000275967 NR_106940 MI0022727 +HGNC:50098 MIR6881 microRNA 6881 non-coding RNA RNA, micro Approved 15 15 hsa-mir-6881 MicroRNAs 476 2014-03-24 2014-11-18 102465530 ENSG00000277391 NR_106941 MI0022728 +HGNC:49928 MIR6882 microRNA 6882 non-coding RNA RNA, micro Approved 15 15 hsa-mir-6882 MicroRNAs 476 2014-03-24 2014-11-18 102465531 ENSG00000275411 NR_106942 MI0022729 +HGNC:50019 MIR6883 microRNA 6883 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6883 MicroRNAs 476 2014-03-24 2014-11-18 102465532 NR_106943 MI0022730 +HGNC:50091 MIR6884 microRNA 6884 non-coding RNA RNA, micro Approved 17 17 hsa-mir-6884 MicroRNAs 476 2014-03-24 2014-11-18 102466757 NR_106944 MI0022731 +HGNC:50221 MIR6885 microRNA 6885 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6885 MicroRNAs 476 2014-03-24 2014-11-19 102465533 ENSG00000274390 NR_106945 MI0022732 +HGNC:50121 MIR6886 microRNA 6886 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6886 MicroRNAs 476 2014-03-24 2014-11-18 102465534 NR_106946 MI0022733 +HGNC:50065 MIR6887 microRNA 6887 non-coding RNA RNA, micro Approved 19 19 hsa-mir-6887 MicroRNAs 476 2014-03-24 2014-11-18 102466205 NR_106947 MI0022734 +HGNC:50071 MIR6888 microRNA 6888 non-coding RNA RNA, micro Approved 2 02 hsa-mir-6888 MicroRNAs 476 2014-03-24 2014-11-18 102465535 ENSG00000275141 NR_106948 MI0022735 +HGNC:50014 MIR6889 microRNA 6889 non-coding RNA RNA, micro Approved 22 22 hsa-mir-6889 MicroRNAs 476 2014-03-24 2014-11-18 102466758 ENSG00000274552 NR_106949 MI0022736 +HGNC:49990 MIR6890 microRNA 6890 non-coding RNA RNA, micro Approved 3 03 hsa-mir-6890 MicroRNAs 476 2014-03-24 2014-11-19 102465536 NR_106950 MI0022737 +HGNC:50243 MIR6891 microRNA 6891 non-coding RNA RNA, micro Approved 6 06 hsa-mir-6891 MicroRNAs 476 2014-03-24 2014-11-18 102465537 ENSG00000277402 NR_106951 MI0022738 +HGNC:50053 MIR6892 microRNA 6892 non-coding RNA RNA, micro Approved 7 07 hsa-mir-6892 MicroRNAs 476 2014-03-24 2014-11-18 102465538 ENSG00000278449 NR_106952 MI0022739 +HGNC:50130 MIR6893 microRNA 6893 non-coding RNA RNA, micro Approved 8q24.3 08q24.3 hsa-mir-6893 MicroRNAs 476 2014-03-24 2015-03-05 102466271 ENSG00000276598 NR_106953 MI0022740 +HGNC:49938 MIR6894 microRNA 6894 non-coding RNA RNA, micro Approved X X hsa-mir-6894 MicroRNAs 476 2014-03-24 2014-11-18 102466759 ENSG00000277474 NR_106954 MI0022741 +HGNC:50210 MIR6895 microRNA 6895 non-coding RNA RNA, micro Approved X X hsa-mir-6895 MicroRNAs 476 2014-03-24 2014-11-18 102465539 ENSG00000276575 NR_106955 MI0022742 +HGNC:50085 MIR7106 microRNA 7106 non-coding RNA RNA, micro Approved 12 12 hsa-mir-7106 MicroRNAs 476 2014-03-24 2014-11-18 102466222 ENSG00000276908 NR_106956 MI0022957 +HGNC:50006 MIR7107 microRNA 7107 non-coding RNA RNA, micro Approved 12 12 hsa-mir-7107 MicroRNAs 476 2014-03-24 2014-11-19 102465665 NR_106957 MI0022958 +HGNC:49998 MIR7108 microRNA 7108 non-coding RNA RNA, micro Approved 19 19 hsa-mir-7108 MicroRNAs 476 2014-03-24 2014-11-19 102466806 NR_106958 MI0022959 +HGNC:50122 MIR7109 microRNA 7109 non-coding RNA RNA, micro Approved 22 22 hsa-mir-7109 MicroRNAs 476 2014-03-24 2014-11-19 102465666 NR_106959 MI0022960 +HGNC:50024 MIR7110 microRNA 7110 non-coding RNA RNA, micro Approved 3 03 hsa-mir-7110 MicroRNAs 476 2014-03-24 2014-11-19 102465667 NR_106960 MI0022961 +HGNC:50073 MIR7111 microRNA 7111 non-coding RNA RNA, micro Approved 6 06 hsa-mir-7111 MicroRNAs 476 2014-03-24 2014-11-19 102465668 ENSG00000276712 NR_106961 MI0022962 +HGNC:50149 MIR7112 microRNA 7112 non-coding RNA RNA, micro Approved 8 08 "hsa-mir-7112-2|hsa-mir-7112-1" "MIR7112-2|MIR7112-1" "microRNA 7112-2|microRNA 7112-1" MicroRNAs 476 2014-03-24 2014-04-29 2014-04-29 2014-11-18 102465906 NR_107057 MI0022963 +HGNC:49947 MIR7113 microRNA 7113 non-coding RNA RNA, micro Approved 11 11 hsa-mir-7113 MicroRNAs 476 2014-03-24 2014-11-18 102465669 NR_106963 MI0022964 +HGNC:50157 MIR7114 microRNA 7114 non-coding RNA RNA, micro Approved 9 09 hsa-mir-7114 MicroRNAs 476 2014-03-24 2014-11-19 102466223 NR_106964 MI0022965 +HGNC:49982 MIR7150 microRNA 7150 non-coding RNA RNA, micro Approved 9 09 hsa-mir-7150 MicroRNAs 476 2014-03-24 2014-11-19 102465688 ENSG00000274932 NR_106972 MI0023610 +HGNC:50170 MIR7151 microRNA 7151 non-coding RNA RNA, micro Approved 10 10 hsa-mir-7151 MicroRNAs 476 2014-03-24 2014-11-19 102466814 ENSG00000276866 NR_106973 MI0023611 +HGNC:50257 MIR7152 microRNA 7152 non-coding RNA RNA, micro Approved 10 10 hsa-mir-7152 MicroRNAs 476 2014-03-24 2014-11-19 102465689 ENSG00000274824 NR_106974 MI0023612 +HGNC:50190 MIR7153 microRNA 7153 non-coding RNA RNA, micro Approved 18 18 hsa-mir-7153 MicroRNAs 476 2014-03-24 2014-11-19 102465690 ENSG00000283492 NR_106975 MI0023613 +HGNC:49972 MIR7154 microRNA 7154 non-coding RNA RNA, micro Approved 11 11 hsa-mir-7154 MicroRNAs 476 2014-03-24 2014-11-19 102465691 ENSG00000276639 NR_106976 MI0023614 +HGNC:50005 MIR7155 microRNA 7155 non-coding RNA RNA, micro Approved 11 11 hsa-mir-7155 MicroRNAs 476 2014-03-24 2014-11-18 102466815 ENSG00000278359 NR_106977 MI0023615 +HGNC:50023 MIR7156 microRNA 7156 non-coding RNA RNA, micro Approved 1 01 hsa-mir-7156 MicroRNAs 476 2014-03-24 2014-11-18 102466995 ENSG00000276081 NR_106978 MI0023616 +HGNC:50010 MIR7157 microRNA 7157 non-coding RNA RNA, micro Approved 2 02 hsa-mir-7157 MicroRNAs 476 2014-03-24 2014-11-18 102465692 ENSG00000283506 NR_106979 MI0023617 +HGNC:49971 MIR7158 microRNA 7158 non-coding RNA RNA, micro Approved 2 02 hsa-mir-7158 MicroRNAs 476 2014-03-24 2014-11-19 102465693 ENSG00000276733 NR_106980 MI0023618 +HGNC:49978 MIR7159 microRNA 7159 non-coding RNA RNA, micro Approved 6 06 hsa-mir-7159 MicroRNAs 476 2014-03-24 2014-11-18 102466816 ENSG00000276824 NR_106982 MI0023620 +HGNC:50028 MIR7160 microRNA 7160 non-coding RNA RNA, micro Approved 8 08 hsa-mir-7160 MicroRNAs 476 2014-03-24 2014-11-19 102465695 ENSG00000273593 NR_106983 MI0023621 +HGNC:49985 MIR7161 microRNA 7161 non-coding RNA RNA, micro Approved 6 06 hsa-mir-7161 MicroRNAs 476 2014-03-24 2014-11-18 102465694 ENSG00000278571 NR_106981 MI0023619 +HGNC:50189 MIR7162 microRNA 7162 non-coding RNA RNA, micro Approved 10 10 hsa-mir-7162 MicroRNAs 476 2014-03-24 2014-11-18 102466227 NR_106985 MI0023623 +HGNC:49839 MIR7515 microRNA 7515 non-coding RNA RNA, micro Approved 2p25.2 02p25.2 hsa-mir-7515 MicroRNAs 476 2014-03-13 2014-03-13 102466235 ENSG00000283394 NR_106986 23087254 MI0024354 +HGNC:49838 MIR7515HG MIR7515 host gene non-coding RNA RNA, long non-coding Approved 2p25.2 02p25.2 MIR7515 host gene (non-protein coding) 2014-03-13 2015-02-20 2015-02-20 102800314 ENSG00000236172 OTTHUMG00000151631 "BX119852|DB061664" NR_110497 +HGNC:49995 MIR7641-1 microRNA 7641-1 non-coding RNA RNA, micro Approved 11 11 hsa-mir-7641-1 MicroRNAs 476 2014-03-24 2014-11-19 102465752 ENSG00000280773 NR_106987 MI0024975 +HGNC:50214 MIR7641-2 microRNA 7641-2 non-coding RNA RNA, micro Approved 14 14 hsa-mir-7641-2 MicroRNAs 476 2014-03-24 2014-11-19 102465753 ENSG00000280494 NR_106988 MI0024976 +HGNC:50216 MIR7702 microRNA 7702 non-coding RNA RNA, micro Approved 9 09 hsa-mir-7702 MicroRNAs 476 2014-03-24 2014-11-18 102465800 ENSG00000274263 NR_106989 MI0025238 +HGNC:50271 MIR7703 microRNA 7703 non-coding RNA RNA, micro Approved 14 14 hsa-mir-7703 MicroRNAs 476 2014-03-24 2014-11-18 102465801 NR_106990 MI0025239 +HGNC:50089 MIR7704 microRNA 7704 non-coding RNA RNA, micro Approved 2 02 hsa-mir-7704 MicroRNAs 476 2014-03-24 2015-02-09 102465802 ENSG00000277284 NR_106991 MI0025240 +HGNC:50143 MIR7705 microRNA 7705 non-coding RNA RNA, micro Approved 8 08 hsa-mir-7705 MicroRNAs 476 2014-03-24 2014-11-18 102466854 NR_106992 MI0025241 +HGNC:50110 MIR7706 microRNA 7706 non-coding RNA RNA, micro Approved 15 15 hsa-mir-7706 MicroRNAs 476 2014-03-24 2015-02-09 102465803 ENSG00000276648 NR_106993 MI0025242 +HGNC:50074 MIR7843 microRNA 7843 non-coding RNA RNA, micro Approved 14 14 hsa-mir-7843 MicroRNAs 476 2014-03-24 2014-11-19 102465832 ENSG00000273830 NR_106994 MI0025510 +HGNC:50044 MIR7844 microRNA 7844 non-coding RNA RNA, micro Approved 12 12 hsa-mir-7844 MicroRNAs 476 2014-03-24 2014-11-18 102465834 NR_106998 MI0025514 +HGNC:50267 MIR7845 microRNA 7845 non-coding RNA RNA, micro Approved 2 02 hsa-mir-7845 MicroRNAs 476 2014-03-24 2014-11-19 102465835 ENSG00000277590 NR_106999 MI0025515 +HGNC:50029 MIR7846 microRNA 7846 non-coding RNA RNA, micro Approved 1 01 hsa-mir-7846 MicroRNAs 476 2014-03-24 2014-11-18 102465836 NR_107000 MI0025516 +HGNC:50153 MIR7847 microRNA 7847 non-coding RNA RNA, micro Approved 11 11 hsa-mir-7847 MicroRNAs 476 2014-03-24 2014-11-19 102465993 NR_107001 MI0025517 +HGNC:50058 MIR7848 microRNA 7848 non-coding RNA RNA, micro Approved 8 08 hsa-mir-7848 MicroRNAs 476 2014-03-24 2014-11-18 102466865 ENSG00000276961 NR_107002 MI0025518 +HGNC:50166 MIR7849 microRNA 7849 non-coding RNA RNA, micro Approved 4 04 hsa-mir-7849 MicroRNAs 476 2014-03-24 2014-11-18 102465837 ENSG00000278438 NR_107003 MI0025519 +HGNC:50118 MIR7850 microRNA 7850 non-coding RNA RNA, micro Approved 19 19 hsa-mir-7850 MicroRNAs 476 2014-03-24 2014-11-19 102465838 ENSG00000277904 NR_107004 MI0025520 +HGNC:50127 MIR7851 microRNA 7851 non-coding RNA RNA, micro Approved 12 12 hsa-mir-7851 MicroRNAs 476 2014-03-24 2014-11-18 102467003 ENSG00000278520 NR_107005 MI0025521 +HGNC:50201 MIR7852 microRNA 7852 non-coding RNA RNA, micro Approved 1 01 hsa-mir-7852 MicroRNAs 476 2014-03-24 2014-11-19 102465839 ENSG00000275455 NR_107006 MI0025522 +HGNC:49933 MIR7853 microRNA 7853 non-coding RNA RNA, micro Approved 6 06 hsa-mir-7853 MicroRNAs 476 2014-03-24 2014-11-19 102466866 ENSG00000263572 NR_107007 MI0025523 +HGNC:50047 MIR7854 microRNA 7854 non-coding RNA RNA, micro Approved 16 16 hsa-mir-7854 MicroRNAs 476 2014-03-24 2014-11-19 102465840 ENSG00000277255 NR_107008 MI0025524 +HGNC:50244 MIR7855 microRNA 7855 non-coding RNA RNA, micro Approved 14 14 hsa-mir-7855 MicroRNAs 476 2014-03-24 2014-11-18 102465841 NR_107009 MI0025525 +HGNC:50268 MIR7856 microRNA 7856 non-coding RNA RNA, micro Approved 1 01 hsa-mir-7856 MicroRNAs 476 2014-03-24 2014-11-18 102465842 ENSG00000278281 NR_107010 MI0025526 +HGNC:50040 MIR7973-1 microRNA 7973-1 non-coding RNA RNA, micro Approved 15 15 hsa-mir-7973-1 MicroRNAs 476 2014-03-24 2014-11-18 102466250 ENSG00000278098 NR_107012 MI0025748 +HGNC:50080 MIR7973-2 microRNA 7973-2 non-coding RNA RNA, micro Approved 15 15 hsa-mir-7973-2 MicroRNAs 476 2014-03-24 2014-11-18 102465855 ENSG00000283614 NR_107013 MI0025749 +HGNC:49992 MIR7974 microRNA 7974 non-coding RNA RNA, micro Approved 19 19 hsa-mir-7974 MicroRNAs 476 2014-03-24 2014-11-18 102465856 ENSG00000274713 NR_107014 MI0025750 +HGNC:49967 MIR7975 microRNA 7975 non-coding RNA RNA, micro Approved 19 19 hsa-mir-7975 MicroRNAs 476 2014-03-24 2014-11-18 102466872 ENSG00000275863 NR_107015 MI0025751 +HGNC:50092 MIR7976 microRNA 7976 non-coding RNA RNA, micro Approved 3 03 hsa-mir-7976 MicroRNAs 476 2014-03-24 2014-11-18 102465857 ENSG00000276083 NR_107016 MI0025752 +HGNC:49969 MIR7977 microRNA 7977 non-coding RNA RNA, micro Approved 3 03 hsa-mir-7977 MicroRNAs 476 2014-03-24 2014-11-18 102465858 ENSG00000283333 NR_107017 MI0025753 +HGNC:50113 MIR7978 microRNA 7978 non-coding RNA RNA, micro Approved 4 04 hsa-mir-7978 MicroRNAs 476 2014-03-24 2014-11-18 102465859 ENSG00000283281 NR_107018 MI0025754 +HGNC:50252 MIR8052 microRNA 8052 non-coding RNA RNA, micro Approved 11 11 hsa-mir-8052 MicroRNAs 476 2014-03-24 2014-11-19 102466873 ENSG00000274999 NR_107019 MI0025888 +HGNC:50137 MIR8053 microRNA 8053 non-coding RNA RNA, micro Approved 4 04 hsa-mir-8053 MicroRNAs 476 2014-03-24 2014-11-18 102467004 ENSG00000277388 NR_107020 MI0025889 +HGNC:50177 MIR8054 microRNA 8054 non-coding RNA RNA, micro Approved 11 11 hsa-mir-8054 MicroRNAs 476 2014-03-24 2014-11-19 102465860 ENSG00000275868 NR_107021 MI0025890 +HGNC:50241 MIR8055 microRNA 8055 non-coding RNA RNA, micro Approved 8 08 hsa-mir-8055 MicroRNAs 476 2014-03-24 2014-11-19 102465861 ENSG00000276580 NR_107022 MI0025891 +HGNC:49948 MIR8056 microRNA 8056 non-coding RNA RNA, micro Approved 5 05 hsa-mir-8056 MicroRNAs 476 2014-03-24 2014-11-19 102465862 ENSG00000274994 NR_107023 MI0025892 +HGNC:49960 MIR8057 microRNA 8057 non-coding RNA RNA, micro Approved 18 18 hsa-mir-8057 MicroRNAs 476 2014-03-24 2014-11-19 102466874 ENSG00000276221 NR_107024 MI0025893 +HGNC:50018 MIR8058 microRNA 8058 non-coding RNA RNA, micro Approved 16 16 hsa-mir-8058 MicroRNAs 476 2014-03-24 2014-11-19 102465863 ENSG00000277387 NR_107025 MI0025894 +HGNC:50068 MIR8059 microRNA 8059 non-coding RNA RNA, micro Approved 17 17 hsa-mir-8059 MicroRNAs 476 2014-03-24 2014-11-18 102466918 ENSG00000278672 NR_107026 MI0025895 +HGNC:50180 MIR8060 microRNA 8060 non-coding RNA RNA, micro Approved 3 03 hsa-mir-8060 MicroRNAs 476 2014-03-24 2014-11-19 102465864 ENSG00000278103 NR_107027 MI0025896 +HGNC:50077 MIR8061 microRNA 8061 non-coding RNA RNA, micro Approved 19 19 hsa-mir-8061 MicroRNAs 476 2014-03-24 2014-11-19 102466251 ENSG00000277636 NR_107028 MI0025897 +HGNC:49975 MIR8062 microRNA 8062 non-coding RNA RNA, micro Approved 20 20 hsa-mir-8062 MicroRNAs 476 2014-03-24 2014-11-19 102465865 ENSG00000278159 NR_107029 MI0025898 +HGNC:50088 MIR8063 microRNA 8063 non-coding RNA RNA, micro Approved 15 15 hsa-mir-8063 MicroRNAs 476 2014-03-24 2014-11-18 102466875 ENSG00000277202 NR_107030 MI0025899 +HGNC:50236 MIR8064 microRNA 8064 non-coding RNA RNA, micro Approved 3 03 hsa-mir-8064 MicroRNAs 476 2014-03-24 2014-11-19 102465866 ENSG00000275789 NR_107031 MI0025900 +HGNC:49959 MIR8065 microRNA 8065 non-coding RNA RNA, micro Approved 16 16 hsa-mir-8065 MicroRNAs 476 2014-03-24 2014-11-18 102465867 ENSG00000273648 NR_107032 MI0025901 +HGNC:50043 MIR8066 microRNA 8066 non-coding RNA RNA, micro Approved 4 04 hsa-mir-8066 MicroRNAs 476 2014-03-24 2014-11-19 102465868 ENSG00000273882 NR_107033 MI0025902 +HGNC:49934 MIR8067 microRNA 8067 non-coding RNA RNA, micro Approved 15 15 hsa-mir-8067 MicroRNAs 476 2014-03-24 2014-11-18 102465869 ENSG00000277919 NR_107034 MI0025903 +HGNC:50238 MIR8068 microRNA 8068 non-coding RNA RNA, micro Approved 11 11 hsa-mir-8068 MicroRNAs 476 2014-03-24 2014-11-18 102466876 ENSG00000273912 NR_107035 MI0025904 +HGNC:50262 MIR8069-1 microRNA 8069-1 non-coding RNA RNA, micro Approved 21 21 hsa-mir-8069 MIR8069 microRNA 8069 MicroRNAs 476 2014-03-24 2014-06-26 2014-06-26 2014-11-19 102466252 ENSG00000278955 NR_107036 MI0025905 +HGNC:50836 MIR8069-2 microRNA 8069-2 non-coding RNA RNA, micro Approved 21 21 MicroRNAs 476 2014-06-26 2014-06-26 103504736 ENSG00000278618 NR_128718 MI0031519 +HGNC:50274 MIR8070 microRNA 8070 non-coding RNA RNA, micro Approved 11 11 hsa-mir-8070 MicroRNAs 476 2014-03-24 2014-11-18 102465870 ENSG00000278529 NR_107037 MI0025906 +HGNC:50041 MIR8071-1 microRNA 8071-1 non-coding RNA RNA, micro Approved 14 14 hsa-mir-8071-1 MicroRNAs 476 2014-03-24 2014-11-18 102465871 ENSG00000274172 NR_107038 MI0025907 +HGNC:49958 MIR8071-2 microRNA 8071-2 non-coding RNA RNA, micro Approved 14 14 hsa-mir-8071-2 MicroRNAs 476 2014-03-24 2014-11-18 102466889 ENSG00000277030 NR_107059 MI0026417 +HGNC:50174 MIR8072 microRNA 8072 non-coding RNA RNA, micro Approved 12 12 hsa-mir-8072 MicroRNAs 476 2014-03-24 2014-11-18 102466877 NR_107039 MI0025908 +HGNC:50131 MIR8073 microRNA 8073 non-coding RNA RNA, micro Approved 13 13 hsa-mir-8073 MicroRNAs 476 2014-03-24 2014-11-18 102465872 ENSG00000276765 NR_107040 MI0025909 +HGNC:50105 MIR8074 microRNA 8074 non-coding RNA RNA, micro Approved 19 19 hsa-mir-8074 MicroRNAs 476 2014-03-24 2014-11-19 102465873 ENSG00000278617 NR_107041 MI0025910 +HGNC:50172 MIR8075 microRNA 8075 non-coding RNA RNA, micro Approved 13 13 hsa-mir-8075 MicroRNAs 476 2014-03-24 2014-11-18 102465874 ENSG00000277942 NR_107042 MI0025911 +HGNC:49997 MIR8076 microRNA 8076 non-coding RNA RNA, micro Approved 3 03 hsa-mir-8076 MicroRNAs 476 2014-03-24 2014-11-18 102466253 ENSG00000275670 NR_107043 MI0025912 +HGNC:50266 MIR8077 microRNA 8077 non-coding RNA RNA, micro Approved 19 19 hsa-mir-8077 MicroRNAs 476 2014-03-24 2014-11-19 102465875 ENSG00000277533 NR_107044 MI0025913 +HGNC:50102 MIR8078 microRNA 8078 non-coding RNA RNA, micro Approved 18 18 hsa-mir-8078 MicroRNAs 476 2014-03-24 2014-11-18 102466878 ENSG00000277521 NR_107045 MI0025914 +HGNC:50021 MIR8079 microRNA 8079 non-coding RNA RNA, micro Approved 13 13 hsa-mir-8079 MicroRNAs 476 2014-03-24 2014-11-18 102465876 ENSG00000276319 NR_107046 MI0025915 +HGNC:49989 MIR8080 microRNA 8080 non-coding RNA RNA, micro Approved 2 02 hsa-mir-8080 MicroRNAs 476 2014-03-24 2014-11-19 102465877 ENSG00000276917 NR_107047 MI0025916 +HGNC:50123 MIR8081 microRNA 8081 non-coding RNA RNA, micro Approved 9 09 hsa-mir-8081 MicroRNAs 476 2014-03-24 2014-11-18 102465995 ENSG00000277889 NR_107048 MI0025917 +HGNC:50111 MIR8082 microRNA 8082 non-coding RNA RNA, micro Approved 4 04 hsa-mir-8082 MicroRNAs 476 2014-03-24 2014-11-18 102465878 ENSG00000275810 NR_107049 MI0025918 +HGNC:50211 MIR8083 microRNA 8083 non-coding RNA RNA, micro Approved 1 01 hsa-mir-8083 MicroRNAs 476 2014-03-24 2014-11-18 102466879 ENSG00000274940 NR_107050 MI0025919 +HGNC:50075 MIR8084 microRNA 8084 non-coding RNA RNA, micro Approved 8 08 hsa-mir-8084 MicroRNAs 476 2014-03-24 2014-11-19 102467005 ENSG00000277063 NR_107051 MI0025920 +HGNC:50120 MIR8085 microRNA 8085 non-coding RNA RNA, micro Approved 19 19 hsa-mir-8085 MicroRNAs 476 2014-03-24 2014-11-19 102465879 NR_107052 MI0025921 +HGNC:50107 MIR8086 microRNA 8086 non-coding RNA RNA, micro Approved 10 10 hsa-mir-8086 MicroRNAs 476 2014-03-24 2014-11-18 102465880 ENSG00000275036 NR_107053 MI0025922 +HGNC:50059 MIR8087 microRNA 8087 non-coding RNA RNA, micro Approved 11 11 hsa-mir-8087 MicroRNAs 476 2014-03-24 2014-11-18 102465881 ENSG00000278483 NR_107054 MI0025923 +HGNC:50167 MIR8088 microRNA 8088 non-coding RNA RNA, micro Approved X X hsa-mir-8088 MicroRNAs 476 2014-03-24 2014-11-18 102466880 ENSG00000275335 NR_107055 MI0025924 +HGNC:50196 MIR8089 microRNA 8089 non-coding RNA RNA, micro Approved 5q35.3 05q35.3 hsa-mir-8089 MicroRNAs 476 2014-03-24 2015-02-09 102465882 ENSG00000277912 NR_107056 MI0025925 +HGNC:50839 MIR8485 microRNA 8485 non-coding RNA RNA, micro Approved 2 02 MicroRNAs 476 2014-06-26 2015-02-09 103504737 ENSG00000216191 NR_130470 MI0027288 +HGNC:50841 MIR9500 microRNA 9500 non-coding RNA RNA, micro Approved 2 02 MicroRNAs 476 2014-06-26 2015-02-09 103504730 ENSG00000283639 NR_128707 MI0029185 +HGNC:31476 MIRLET7A1 microRNA let-7a-1 non-coding RNA RNA, micro Approved 9q22.32 09q22.32 hsa-let-7a-1 MIRNLET7A1 MicroRNAs 476 2004-04-23 2008-12-18 2012-03-12 406881 ENSG00000199165 uc004aui.4 NR_029476 RGD:2325409 605386 MI0000060 +HGNC:31477 MIRLET7A2 microRNA let-7a-2 non-coding RNA RNA, micro Approved 11q24.1 11q24.1 hsa-let-7a-2 MIRNLET7A2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406882 ENSG00000198975 uc001pyg.4 NR_029477 612142 MI0000061 +HGNC:31478 MIRLET7A3 microRNA let-7a-3 non-coding RNA RNA, micro Approved 22q13.31 22q13.31 hsa-let-7a-3 MIRNLET7A3 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406883 ENSG00000198986 uc021wrn.2 NR_029478 RGD:2325399 612143 MI0000062 +HGNC:31479 MIRLET7B microRNA let-7b non-coding RNA RNA, micro Approved 22q13.31 22q13.31 hsa-let-7b MIRNLET7B MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406884 ENSG00000207875 uc021wrq.1 NR_029479 RGD:2325607 611249 MI0000063 +HGNC:37189 MIRLET7BHG MIRLET7B host gene non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 linc-Ppara MIRLET7B host gene (non-protein coding) 2009-08-18 2015-02-20 2015-02-20 400931 ENSG00000197182 OTTHUMG00000150446 uc003bgu.4 NR_027033 "15364908|24381249" RGD:10398754 +HGNC:31480 MIRLET7C microRNA let-7c non-coding RNA RNA, micro Approved 21q21.1 21q21.1 hsa-let-7c MIRNLET7C MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406885 ENSG00000199030 uc002yke.4 NR_029480 RGD:2325435 612144 MI0000064 +HGNC:31481 MIRLET7D microRNA let-7d non-coding RNA RNA, micro Approved 9q22.32 09q22.32 hsa-let-7d MIRNLET7D MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406886 ENSG00000199133 uc004aul.3 NR_029481 RGD:2325622 612145 MI0000065 +HGNC:37186 MIRLET7DHG MIRLET7D host gene non-coding RNA RNA, long non-coding Approved 9q22.32 09q22.32 MIRLET7D host gene (non-protein coding) 2011-09-01 2015-02-20 2015-02-20 158257 ENSG00000230262 OTTHUMG00000020259 uc004auk.5 NR_046163 15364901 +HGNC:31482 MIRLET7E microRNA let-7e non-coding RNA RNA, micro Approved 19q13.41 19q13.41 hsa-let-7e MIRNLET7E MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406887 ENSG00000198972 uc002pxi.4 NR_029482 611250 MI0000066 +HGNC:31483 MIRLET7F1 microRNA let-7f-1 non-coding RNA RNA, micro Approved 9q22.32 09q22.32 hsa-let-7f-1 MIRNLET7F1 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406888 ENSG00000199072 uc004auj.4 NR_029483 612146 MI0000067 +HGNC:31484 MIRLET7F2 microRNA let-7f-2 non-coding RNA RNA, micro Approved Xp11.22 Xp11.22 hsa-let-7f-2 MIRNLET7F2 MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406889 ENSG00000208012 uc004dss.2 NR_029484 RGD:2325605 300721 MI0000068 +HGNC:31485 MIRLET7G microRNA let-7g non-coding RNA RNA, micro Approved 3p21.1 03p21.1 hsa-let-7g MIRNLET7G MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406890 ENSG00000199150 uc011bee.3 NR_029660 612102 MI0000433 +HGNC:31486 MIRLET7I microRNA let-7i non-coding RNA RNA, micro Approved 12q14.1 12q14.1 hsa-let-7i MIRNLET7I MicroRNAs 476 2004-04-23 2008-12-18 2011-09-12 406891 ENSG00000199179 uc001srj.3 NR_029661 RGD:2325604 612148 MI0000434 +HGNC:31633 MIRN321 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0000543 +HGNC:32816 MIRN560 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0003566 +HGNC:32821 MIRN565 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0003571 +HGNC:32850 MIRN594 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0003606 +HGNC:33633 MIRN672 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0005522 +HGNC:33646 MIRN674 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0005535 +HGNC:33144 MIRN801 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0005202 +HGNC:33637 MIRN871 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0005526 +HGNC:33657 MIRN872 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 MI0005558 +HGNC:24967 MIS12 MIS12, kinetochore complex component protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "MGC2488|hMIS12|KNTC2AP|MTW1" "MIS12, MIND kinetochore complex component, homolog (yeast)|MIS12, MIND kinetochore complex component, homolog (S. pombe)" MIS12 kinetochore complex 1322 2004-07-29 2016-05-12 2016-10-05 79003 ENSG00000167842 OTTHUMG00000102042 uc031qyh.2 AL136906 NM_024039 CCDS11074 Q9H081 "11230166|12515822" MGI:1914389 RGD:1564837 MIS12 609178 +HGNC:1286 MIS18A MIS18 kinetochore protein A protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "B28|FASP1|hMis18alpha" "C21orf46|C21orf45" "chromosome 21 open reading frame 46|chromosome 21 open reading frame 45|MIS18 kinetochore protein homolog A (S. pombe)" 2000-05-23 2011-02-23 2013-10-21 2015-08-25 54069 ENSG00000159055 OTTHUMG00000085308 uc002ypi.4 AF231921 NM_018944 CCDS13611 Q9NYP9 17199038 MGI:1913828 RGD:1310778 MIS18A +HGNC:40106 MIS18A-AS1 MIS18A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 MIS18A antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100874202 ENSG00000227256 OTTHUMG00000085306 uc061znb.1 BG209386 +HGNC:20190 MIS18BP1 MIS18 binding protein 1 protein-coding gene gene with protein product Approved 14q21.2 14q21.2 "M18BP1|FLJ11186|KIAA1903|KNL2" kinetochore null 2 homolog (C. elegans) C14orf106 chromosome 14 open reading frame 106 Myb/SANT domain containing 532 2002-12-20 2011-02-23 2011-02-23 2016-10-05 55320 ENSG00000129534 OTTHUMG00000140266 uc001wwf.3 AB067490 XM_005267833 CCDS9684 Q6P0N0 "17339379|17199038" MGI:2145099 RGD:1594757 MIS18BP1 +HGNC:27000 MISP mitotic spindle positioning protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "DKFZp686H18209|Caprice|MISP1" mitotic interactor and substrate of Plk1 C19orf21 chromosome 19 open reading frame 21 2004-03-16 2013-05-03 2013-05-03 2016-07-08 126353 ENSG00000099812 OTTHUMG00000181786 BC052236 NM_173481 CCDS12042 Q8IVT2 "23574715|23509069|24475924" MGI:1926156 RGD:1595680 615289 +HGNC:26963 MISP3 MISP family member 3 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 2016-07-08 2016-07-08 113230 ENSG00000141854 OTTHUMG00000181994 NM_001291291 CCDS77246 23509069 RGD:1310262 +HGNC:25207 MITD1 microtubule interacting and trafficking domain containing 1 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 LOC129531 MIT, microtubule interacting and transport, domain containing 1 2006-07-14 2015-11-05 2015-11-05 129531 ENSG00000158411 OTTHUMG00000130638 uc002szs.2 BC018453 NM_138798 CCDS2040 Q8WV92 16730941 MGI:1916278 RGD:1307700 MITD1 +HGNC:7105 MITF melanogenesis associated transcription factor protein-coding gene gene with protein product Approved 3p13 03p13 "MI|bHLHe32" homolog of mouse microphthalmia "WS2A|WS2" "Waardenburg syndrome, type 2A|microphthalmia-associated transcription factor" Basic helix-loop-helix proteins 420 1993-10-27 2016-05-23 2016-10-12 4286 ENSG00000187098 OTTHUMG00000149921 uc003dof.4 NM_198159 "CCDS2913|CCDS43106|CCDS43107|CCDS46865|CCDS46866|CCDS54607|CCDS74962" O75030 "8069297|7874167|7951321" MGI:104554 RGD:3092 "LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/WS/home.php?select_db=MITF|LRG_776|http://www.lrg-sequence.org/LRG/LRG_776" MITF 156845 123243 +HGNC:13363 MIXL1 Mix paired-like homeobox protein-coding gene gene with protein product Approved 1q42.12 01q42.12 "MILD1|MIXL" "Mix1 homeobox (Xenopus laevis)-like 1|Mix1 homeobox-like 1 (Xenopus laevis)" PRD class homeoboxes and pseudogenes 521 2002-11-11 2011-06-01 2014-11-19 83881 ENSG00000185155 OTTHUMG00000037558 uc010pvm.4 AF211891 NM_031944 "CCDS1552|CCDS60432" Q9H2W2 "12095687|12070013" MGI:1351322 RGD:1310011 MIXL1 609852 8466 +HGNC:7107 MKI67 marker of proliferation Ki-67 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 "MIB-|PPP1R105" protein phosphatase 1, regulatory subunit 105 antigen identified by monoclonal antibody Ki-67 Protein phosphatase 1 regulatory subunits 694 1990-05-29 2013-10-10 2014-11-19 4288 ENSG00000148773 OTTHUMG00000019255 uc001lke.4 X65550 NM_002417 "CCDS7659|CCDS53588" P46013 "2571566|16206250" MGI:106035 RGD:1305476 MKI67 176741 +HGNC:49230 MKI67P1 marker of proliferation Ki-67 pseudogene 1 pseudogene pseudogene Approved Xp11.3 Xp11.3 antigen identified by monoclonal antibody Ki-67 pseudogene 1 2013-10-10 2013-10-10 2016-10-05 100271918 ENSG00000270499 OTTHUMG00000185006 NG_011647 PGOHUM00000241265 +HGNC:7108 MKKS McKusick-Kaufman syndrome protein-coding gene gene with protein product Approved 20p12.2 20p12.2 BBS6 "Chaperonins|Bardet-Biedl syndrome associated" "587|980" 1998-09-08 2016-10-05 8195 ENSG00000125863 OTTHUMG00000031868 uc002wnu.3 AF221993 NR_072977 CCDS13111 Q9NPJ1 9467007 MGI:1891836 RGD:1308814 Mutations of the McKusick-Kaufman Gene|http://www.retina-international.org/files/sci-news/mkksmut.htm MKKS 604896 123245 +HGNC:14334 MKL1 megakaryoblastic leukemia (translocation) 1 protein-coding gene gene with protein product Approved 22q13.1-q13.2 22q13.1-q13.2 "KIAA1438|MAL|MRTF-A|BSAC" "megakaryocytic acute leukemia|myocardin-related transcription factor A|basic, SAP and coiled-coil domain" 2001-05-10 2016-10-11 57591 ENSG00000196588 OTTHUMG00000151146 uc032qph.2 AB037859 NM_020831 "CCDS14003|CCDS74865|CCDS74866|CCDS82720" Q969V6 "11431691|12019265|14970199" MGI:2384495 RGD:1304873 MKL1 606078 409876 +HGNC:29819 MKL2 MKL1/myocardin like 2 protein-coding gene gene with protein product Approved 16p13.12 16p13.12 "MRTF-B|FLJ31823" MKL/myocardin like 2 2004-08-25 2016-03-21 2016-03-21 57496 ENSG00000186260 OTTHUMG00000177379 uc010uza.3 AB033069 NM_014048 "CCDS32391|CCDS76823" Q9ULH7 10574462 MGI:3050795 RGD:1560833 MKL2 609463 +HGNC:7109 MKLN1 muskelin 1 protein-coding gene gene with protein product Approved 7q32.3 07q32.3 TWA2 muskelin 1, intracellular mediator containing kelch motifs 1998-07-15 2015-11-23 2016-10-05 4289 ENSG00000128585 OTTHUMG00000154880 uc064ibt.1 AF047489 NM_013255 CCDS34754 Q9UL63 10640805 MGI:1351638 RGD:620076 MKLN1 605623 +HGNC:40374 MKLN1-AS MKLN1 antisense RNA non-coding RNA RNA, long non-coding Approved 7q32.3 07q32.3 MKLN1-AS2 MKLN1 antisense RNA 2 2013-07-23 2013-10-10 2013-10-10 2014-11-18 100506881 ENSG00000236753 OTTHUMG00000154998 "AK054623|DB039005" NR_125364 +HGNC:7110 MKNK1 MAP kinase interacting serine/threonine kinase 1 protein-coding gene gene with protein product Approved 1p33 01p33 MNK1 Mitogen-activated protein kinase-activated protein kinases 1156 1999-03-04 2014-11-19 8569 ENSG00000079277 OTTHUMG00000007983 uc001cqb.5 AB000409 NM_003684 "CCDS538|CCDS30705|CCDS44134" Q9BUB5 9155018 MGI:894316 RGD:1559603 MKNK1 606724 objectId:2104 +HGNC:44129 MKNK1-AS1 MKNK1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p33 01p33 MKNK1 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100507423 ENSG00000269956 OTTHUMG00000184075 uc021onb.1 AK097731 NR_038403 +HGNC:7111 MKNK2 MAP kinase interacting serine/threonine kinase 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MNK2 Putative map kinase interacting kinase GPRK7 G protein-coupled receptor kinase 7 Mitogen-activated protein kinase-activated protein kinases 1156 2000-02-29 2014-11-19 2872 ENSG00000099875 OTTHUMG00000180020 uc002lus.3 AF125532 NM_199054 "CCDS12079|CCDS12080" Q9HBH9 11013076 MGI:894279 RGD:1305728 MKNK2 605069 objectId:2105 +HGNC:44970 MKNK2P1 MAP kinase interacting serine/threonine kinase 2 pseudogene 1 pseudogene pseudogene Approved 10p11.21 10p11.21 2012-12-20 2012-12-20 389948 ENSG00000233533 OTTHUMG00000017966 NG_022142 PGOHUM00000238408 +HGNC:7112 MKRN1 makorin ring finger protein 1 protein-coding gene gene with protein product Approved 7q34 07q34 RNF61 Ring finger proteins 58 1999-10-19 2008-08-13 2014-11-19 23608 ENSG00000133606 OTTHUMG00000157412 uc003vvt.2 AF192784 NM_013446 "CCDS5860|CCDS47725" Q9UHC7 10843807 MGI:1859353 RGD:1303251 MKRN1 607754 +HGNC:7113 MKRN2 makorin ring finger protein 2 protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "RNF62|HSPC070" Ring finger proteins 58 1999-10-19 2008-08-13 2016-10-05 23609 ENSG00000075975 OTTHUMG00000155371 uc003bxd.5 NM_014160 "CCDS33702|CCDS63545" Q9H000 11597136 MGI:1914277 RGD:1310618 MKRN2 608426 +HGNC:40375 MKRN2OS MKRN2 opposite strand protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "MKRN2-AS1|C3orf83" "MKRN2 antisense RNA 1|chromosome 3 open reading frame 83" 2011-07-28 2014-05-22 2014-05-22 2015-08-25 100129480 ENSG00000225526 OTTHUMG00000155368 NM_001195279 CCDS58816 H3BPM6 MGI:1917541 RGD:2320714 +HGNC:7114 MKRN3 makorin ring finger protein 3 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 "RNF63|ZFP127|MGC88288" zinc finger protein 127 "ZNF127|D15S9" Ring finger proteins 58 1992-11-06 2008-08-13 2016-10-12 7681 ENSG00000179455 OTTHUMG00000129160 uc001ywh.5 U19107 NM_005664 CCDS10013 Q13064 10196367 MGI:2181178 RGD:1311197 LRG_1045|http://www.lrg-sequence.org/LRG/LRG_1045 MKRN3 603856 360230 +HGNC:12910 MKRN3-AS1 MKRN3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q11-q13 15q11-q13 "FNZ127|NCRNA00009|ZNF127-AS" non-protein coding RNA 9 "ZNF127AS|MKRN3AS|MKRN3-AS" "zinc finger protein 127, antisense|MKRN3 antisense RNA (non-protein coding)|MKRN3 antisense RNA 1 (non-protein coding)" 1999-06-02 2010-11-25 2012-08-15 2014-01-17 10108 ENSG00000260978 OTTHUMG00000176418 uc059gsx.1 "10196367|9237260" 603857 +HGNC:7115 MKRN4P makorin ring finger protein 4, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 "ZNF-Xp|RNF64" "ZNF127L1|MKRN4|MKRNP5" "makorin, ring finger protein, 4|makorin ring finger protein pseudogene 5" Ring finger proteins 58 1992-11-06 2010-02-04 2010-02-04 2016-10-05 7682 ENSG00000238222 OTTHUMG00000024109 U41315 NM_030757 Q13434 MKRN4P +HGNC:7117 MKRN5P makorin ring finger protein 5, pseudogene pseudogene pseudogene Approved Xq13.2 Xq13.2 ZNF-Xq "ZNF127L2|MKRNP1" makorin ring finger protein pseudogene 1 Ring finger proteins 58 1992-11-06 2010-02-04 2010-02-04 2012-02-29 7683 ENSG00000224430 OTTHUMG00000021846 U41316 NG_000873 PGOHUM00000241395 +HGNC:7118 MKRN6P makorin ring finger protein 6, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 MKRNP2 makorin ring finger protein pseudogene 2 Ring finger proteins 58 1999-10-19 2010-02-04 2010-02-04 2014-11-19 23610 NG_002786 +HGNC:7119 MKRN7P makorin ring finger protein 7, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 "ZNF127L5|MKRNP3" makorin ring finger protein pseudogene 3 Ring finger proteins 58 1992-11-06 2010-02-04 2010-02-04 2016-07-25 7686 ENSG00000225849 OTTHUMG00000032649 NR_026640 PGOHUM00000297012 +HGNC:7120 MKRN8P makorin ring finger protein 8, pseudogene pseudogene pseudogene Approved 1p34.2 01p34.2 LOC391033 "ZNF127L4|MKRNP4" makorin ring finger protein pseudogene 4 Ring finger proteins 58 1992-11-06 2010-02-04 2010-02-04 2010-02-04 391033 NG_009613 +HGNC:7116 MKRN9P makorin ring finger protein 9, pseudogene pseudogene pseudogene Approved 12q21.3 12q21.3 "MKRN9|RNF65" "ZNF127L3|MKRN5|MKRNP6" "makorin ring finger protein 5|makorin ring finger protein pseudogene 6" Ring finger proteins 58 1992-11-06 2010-02-04 2010-02-04 2014-11-19 400058 ENSG00000258128 OTTHUMG00000169865 BC067894 NG_004764 Q6NVV0 +HGNC:7121 MKS1 Meckel syndrome, type 1 protein-coding gene gene with protein product Approved 17q22 17q22 "FLJ20345|POC12|BBS13" POC12 centriolar protein homolog (Chlamydomonas) MKS Bardet-Biedl syndrome associated 980 1995-11-07 2016-10-12 54903 ENSG00000011143 OTTHUMG00000133714 uc002ivr.3 DQ185029 NM_017777 "CCDS11603|CCDS54148|CCDS82170" Q9NXB0 "7550354|16415886|18327255" MGI:3584243 RGD:1565186 LRG_687|http://www.lrg-sequence.org/LRG/LRG_687 MKS1 609883 123253 +HGNC:23729 MKX mohawk homeobox protein-coding gene gene with protein product Approved 10p12.1 10p12.1 MGC39616 "C10orf48|IRXL1" "chromosome 10 open reading frame 48|iroquois homeobox protein-like 1" TALE class homeoboxes and pseudogenes 526 2003-12-09 2006-03-31 2006-03-31 2014-11-19 283078 ENSG00000150051 OTTHUMG00000017862 uc001itx.5 BC036207 NM_173576 CCDS7156 Q8IYA7 16408284 MGI:2687286 RGD:1305652 MKX 601332 8382 +HGNC:50686 MKX-AS1 MKX antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 2014-06-05 2014-06-05 101929202 ENSG00000230500 OTTHUMG00000017863 BU195543 NR_121652 +HGNC:7124 MLANA melan-A protein-coding gene gene with protein product Approved 9p24.1 09p24.1 MART1 1994-08-29 2015-11-27 2315 ENSG00000120215 OTTHUMG00000019510 uc003zjo.2 NM_005511 CCDS6466 Q16655 12191019 MGI:108454 RGD:1306525 MLANA 605513 +HGNC:17082 MLC1 megalencephalic leukoencephalopathy with subcortical cysts 1 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "MLC|KIAA0027|LVM|VL" 2002-04-30 2014-11-19 23209 ENSG00000100427 OTTHUMG00000150236 uc003bjh.2 D25217 NM_015166 CCDS14083 Q15049 "7584026|7584028" MGI:2157910 RGD:1308552 MLC1 605908 123257 +HGNC:28973 MLEC malectin protein-coding gene gene with protein product Approved 12q24.31 12q24.31 oligosaccharyltransferase complex subunit (non-catalytic) KIAA0152 KIAA0152 Oligosaccharyltransferase complex subunits 445 2005-01-17 2008-11-05 2008-11-05 2016-03-01 9761 ENSG00000110917 OTTHUMG00000169187 uc001tyy.2 BC000371 NM_014730 "CCDS9206|CCDS76609" Q14165 "18524852|22988243" MGI:1924015 RGD:1307736 MLEC 613802 +HGNC:51122 MLECP1 malectin pseudogene 1 pseudogene pseudogene Approved 18q12.3 18q12.3 2014-07-30 2014-07-30 106480317 ENSG00000277899 OTTHUMG00000187945 NG_044402 PGOHUM00000294773 +HGNC:7125 MLF1 myeloid leukemia factor 1 protein-coding gene gene with protein product Approved 3q25.32 03q25.32 "myeloid leukemia factor 1 variant 1|myeloid leukemia factor 1 variant 2|myeloid leukemia factor 1 variant 3" 1994-08-29 2016-10-05 4291 ENSG00000178053 OTTHUMG00000158775 uc003fcb.4 L49054 NM_022443 "CCDS3182|CCDS46945|CCDS56286|CCDS56287|CCDS56288" P58340 8570204 MGI:1341819 RGD:1306854 MLF1 601402 +HGNC:7126 MLF2 myeloid leukemia factor 2 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 NTN4 1999-06-02 2015-08-25 8079 ENSG00000089693 OTTHUMG00000168717 uc009zey.2 U57342 NM_005439 CCDS8559 Q15773 8661158 MGI:1353554 RGD:1306294 MLF2 601401 +HGNC:7127 MLH1 mutL homolog 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "HNPCC|FCC2|HNPCC2" COCA2 "mutL (E. coli) homolog 1 (colon cancer, nonpolyposis type 2)|mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli)" MutL homologs 1027 1993-11-24 2013-09-12 2016-10-12 4292 ENSG00000076242 OTTHUMG00000130797 uc003cgl.4 U07418 NM_000249 "CCDS2663|CCDS54562|CCDS54563" P40692 7903889 MGI:101938 RGD:620937 "Hereditary Non-Polyposis Colorectal Cancer, HNPCC|http://www.insight-group.org/|Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=MLH1|MLH1 database at LOVD-China|http://genomed.org/LOVD/HNPCC/home.php?select_db=MLH1|LOVD - Leiden Open Variation Database|http://proteomics.bio21.unimelb.edu.au/lovd/genes/MLH1|LRG_216|http://www.lrg-sequence.org/LRG/LRG_216" MLH1 120436 123263 +HGNC:7128 MLH3 mutL homolog 3 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "mutL (E. coli) homolog 3|mutL homolog 3 (E. coli)" MutL homologs 1027 2000-01-07 2013-09-12 2016-10-12 27030 ENSG00000119684 OTTHUMG00000171766 uc001xre.2 AF195657 NM_014381 "CCDS9837|CCDS32123" Q9UHC1 10615123 MGI:1353455 RGD:1309227 "Hereditary Non-Polyposis Colorectal Cancer, HNPCC|http://www.insight-group.org/|Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=MLH3|MLH3 database at LOVD-China|http://genomed.org/LOVD/HNPCC/home.php?select_db=MLH3|LRG_217|http://www.lrg-sequence.org/LRG/LRG_217" MLH3 604395 123269 +HGNC:21355 MLIP muscular LMNA interacting protein protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "MGC18257|CIP" "muscle-enriched A-type lamin interacting protein|cardiac ISL1-interacting protein" C6orf142 chromosome 6 open reading frame 142 2003-06-09 2011-04-29 2016-08-10 2016-10-05 90523 ENSG00000146147 OTTHUMG00000014891 uc003pcg.4 AK055530 NM_138569 "CCDS4954|CCDS64448|CCDS64449" Q5VWP3 21498514 MGI:1916892 RGD:1590513 MLIP 614106 +HGNC:40963 MLIP-AS1 MLIP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p12.1 06p12.1 MLIP antisense RNA 1 (non-protein coding) 2011-05-04 2012-08-15 2014-11-19 100873951 ENSG00000235050 OTTHUMG00000014889 uc063pdg.1 +HGNC:41461 MLIP-IT1 MLIP intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6p12.1 06p12.1 MLIP intronic transcript 1 (non-protein coding) 2011-05-04 2015-02-25 2015-02-25 100874282 ENSG00000236996 OTTHUMG00000014890 uc031soy.1 NR_046832 +HGNC:27935 MLK7-AS1 MLK7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 MLK7 antisense RNA 1 (non-protein coding) 2011-04-28 2012-08-15 2014-11-19 339751 ENSG00000238133 OTTHUMG00000154109 uc002uib.4 BC040565 NR_033882 12477932 +HGNC:26617 MLKL mixed lineage kinase domain like protein-coding gene gene with protein product Approved 16q22.3 16q22.3 FLJ34389 mixed lineage kinase domain-like 2005-02-10 2016-07-15 2016-07-15 197259 ENSG00000168404 OTTHUMG00000177356 uc002fdb.3 AK091708 NM_152649 "CCDS32487|CCDS45528" Q8NB16 12477932 MGI:1921818 RGD:1592221 MLKL 615153 objectId:2106 +HGNC:7134 MLLT1 MLLT1, super elongation complex subunit protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "ENL|LTG19|YEATS1" myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1 "Super elongation complex|YEATS domain containing" "1280|1283" 1993-02-02 2016-06-15 2016-06-15 4298 ENSG00000130382 OTTHUMG00000180757 uc002mek.4 NM_005934 CCDS12160 Q03111 MGI:1927238 RGD:1588581 MLLT1 159556 +HGNC:7136 MLLT3 MLLT3, super elongation complex subunit protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "AF-9|AF9|YEATS3" myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3 "Super elongation complex|YEATS domain containing" "1280|1283" 1993-04-08 2016-06-15 2016-10-05 4300 ENSG00000171843 OTTHUMG00000019650 uc003zoe.3 L13744 NM_004529 "CCDS6494|CCDS69579" P42568 "8506309|8414510" MGI:1917372 RGD:620940 MLLT3 159558 409859 +HGNC:7138 MLLT6 MLLT6, PHD finger domain containing protein-coding gene gene with protein product Approved 17q12 17q12 "AF17|FLJ23480" "Myeloid/lymphoid or mixed-lineage leukemia, translocated to, 6|trithorax homolog" "myeloid/lymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog); translocated to, 6|myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6" PHD finger proteins 88 1994-12-14 2016-06-30 2016-10-05 4302 ENSG00000275023 OTTHUMG00000188498 uc002hqi.5 NM_005937 CCDS11327 P55198 "8058765|21546577" MGI:1935145 RGD:1306689 MLLT6 600328 +HGNC:16063 MLLT10 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 AF10 "myeloid/lymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog); translocated to, 10|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10" PHD finger proteins 88 2001-07-16 2015-06-22 2016-10-05 8028 ENSG00000078403 OTTHUMG00000017799 uc001iqs.4 U13948 NM_001324297 "CCDS7135|CCDS55706|CCDS55707|CCDS55708" P55197 7888665 MGI:1329038 RGD:1310874 MLLT10 602409 358705 +HGNC:15794 MLLT10P1 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 pseudogene 1 pseudogene pseudogene Approved 20q11.21 20q11.21 bA348I14.3 MLLT10L "myeloid/lymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog); translocated to, 10-like|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10-like|myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 1" 2001-09-17 2010-10-20 2015-06-22 2015-06-22 140678 ENSG00000238151 OTTHUMG00000032156 AL441988 NR_045115 PGOHUM00000247503 +HGNC:39141 MLLT10P2 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 pseudogene 2 pseudogene pseudogene Approved 4q35.2 04q35.2 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 2 2010-10-20 2016-06-27 2016-06-27 106480724 ENSG00000249462 OTTHUMG00000161001 NG_045070 PGOHUM00000245795 +HGNC:16997 MLLT11 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 AF1Q ALL1 fused gene from chromosome 1q myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 2005-05-23 2015-06-22 2016-10-05 10962 ENSG00000213190 OTTHUMG00000035160 uc001ewq.4 BC006471 NM_006818 CCDS982 Q13015 7833468 MGI:1929671 RGD:1305525 MLLT11 604684 +HGNC:7141 MLN motilin protein-coding gene gene with protein product Approved 6p21.31 06p21.31 prepromotilin Endogenous ligands 542 1988-08-05 2014-11-19 4295 ENSG00000096395 OTTHUMG00000014536 uc003off.2 NM_001184698 "CCDS4786|CCDS47412|CCDS54993" P12872 RGD:1642907 MLN 158270 +HGNC:4495 MLNR motilin receptor protein-coding gene gene with protein product Approved 13q14.2 13q14.2 GPR38 G protein-coupled receptor 38 Peptide receptors 220 1997-08-28 2004-05-28 2004-05-27 2016-10-05 2862 ENSG00000102539 OTTHUMG00000016909 uc010tgj.2 AF034632 NM_001507 CCDS9414 O43193 9441746 MLNR 602885 objectId:297 +HGNC:29643 MLPH melanophilin protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "l1Rk3|l(1)-3Rk|Slac-2a|ln|exophilin-3" 2004-01-09 2016-10-12 79083 ENSG00000115648 OTTHUMG00000133298 uc002vwt.5 AY358857 NM_024101 "CCDS2518|CCDS42836|CCDS63172|CCDS63173" Q9BV36 "11980908|11504925" MGI:2176380 RGD:1310733 "MLPHbase: Mutation registry for Griscelli syndrome, type 3 (GS3)|http://structure.bmc.lu.se/idbase/MLPHbase/|LRG_83|http://www.lrg-sequence.org/LRG/LRG_83" MLPH 606526 123279 +HGNC:7143 MLPL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-11-06 +HGNC:24825 MLST8 MTOR associated protein, LST8 homolog protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "Lst8|Pop3|GBL|GbetaL" G protein beta subunit like MTOR associated protein, LST8 homolog (S. cerevisiae) "WD repeat domain containing|MTOR complex 1|MTOR complex 2" "362|1332|1333" 2009-05-29 2015-06-26 2015-06-26 64223 ENSG00000167965 OTTHUMG00000128827 uc002cpc.4 NM_022372 "CCDS10462|CCDS58409" Q9BVC4 12477932 MGI:1929514 RGD:69242 MLST8 612190 +HGNC:7149 MLVI2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:11645 MLX MLX, MAX dimerization protein protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "MAD7|MXD7|bHLHd13" TCFL4 "transcription factor-like 4|MAX-like protein X" "Basic helix-loop-helix proteins|MAX dimerization proteins" "420|637" 1997-10-10 2005-02-11 2012-11-15 2014-11-19 6945 ENSG00000108788 OTTHUMG00000180246 uc002iag.4 AF213668 NM_170607 "CCDS11430|CCDS42341|CCDS45687" Q9UH92 8973301 MGI:108398 RGD:1308590 MLX 602976 360280 +HGNC:17055 MLXIP MLX interacting protein protein-coding gene gene with protein product Approved 12q21.31 12q21.31 "MONDOA|KIAA0867|MIR|bHLHe36" Basic helix-loop-helix proteins 420 2005-10-31 2013-05-21 22877 ENSG00000175727 OTTHUMG00000168953 uc001ubq.4 AB020674 NM_014938 CCDS73540 Q9HAP2 "10048485|11073985" MGI:2141183 RGD:1560774 MLXIP 608090 +HGNC:12744 MLXIPL MLX interacting protein like protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "WS-bHLH|MIO|CHREBP|MONDOB|bHLHd14" carbohydrate response element binding protein WBSCR14 "Williams Beuren syndrome chromosome region 14|MLX interacting protein-like" Basic helix-loop-helix proteins 420 2000-01-20 2005-10-31 2016-03-14 2016-03-14 51085 ENSG00000009950 OTTHUMG00000129995 uc003tyn.1 AK055029 NM_032951 "CCDS5553|CCDS5554|CCDS47605|CCDS47606" Q9NP71 9860302 MGI:1927999 RGD:620400 MLXIPL 605678 +HGNC:7150 MLYCD malonyl-CoA decarboxylase protein-coding gene gene with protein product Approved 16q23.3 16q23.3 "MCD|hMCD" 2000-02-11 2016-01-08 23417 ENSG00000103150 OTTHUMG00000176654 uc002fgz.4 AF153679 NM_012213 CCDS42206 O95822 "10455107|9869665" MGI:1928485 RGD:620234 "MLYCD Allelic Variant Database|https://lsdb.hgu.mrc.ac.uk/home.php?select_db=MLYCD/|LOVD|http://lsdb.hgu.mrc.ac.uk/home.php?select_db=MLYCD" MLYCD 606761 123290 objectId:1275 +HGNC:18871 MMAA methylmalonic aciduria (cobalamin deficiency) cblA type protein-coding gene gene with protein product Approved 4q31.1 04q31.1 cblA methylmalonic aciduria (cobalamin deficiency) type A 2003-02-11 2005-07-11 2016-07-08 166785 ENSG00000151611 OTTHUMG00000161369 uc003ikh.5 AF524841 XM_011531685 CCDS3766 Q8IVH4 12438653 MGI:1923805 RGD:1305035 MMAA database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=MMAA MMAA 607481 123294 3.6.-.- +HGNC:19331 MMAB methylmalonic aciduria (cobalamin deficiency) cblB type protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "cblB|CFAP23" "ATP:cob(I)alamin adenosyltransferase|cilia and flagella associated protein 23" methylmalonic aciduria (cobalamin deficiency) type B 2003-02-11 2005-07-11 2016-10-05 326625 ENSG00000139428 OTTHUMG00000169255 uc001tou.4 AF550404 XM_011538267 CCDS9131 Q96EY8 "12471062|12514191" MGI:1924947 RGD:1596242 MMAB database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=MMAB MMAB 607568 123296 2.5.1.17 +HGNC:24525 MMACHC methylmalonic aciduria (cobalamin deficiency) cblC type, with homocystinuria protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "DKFZP564I122|cblC" 2006-01-12 2016-07-08 25974 ENSG00000132763 OTTHUMG00000007742 uc009vxv.4 NM_015506 "CCDS41324|CCDS81315" Q9Y4U1 "16311595|19700356|19801555" MGI:1914346 RGD:1310806 MMACHC database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=MMACHC MMACHC 609831 123433 +HGNC:25221 MMADHC methylmalonic aciduria and homocystinuria, cblD type protein-coding gene gene with protein product Approved 2q23.2 02q23.2 "CL25022|cblD" C2orf25 "chromosome 2 open reading frame 25|methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria" 2004-04-29 2009-01-08 2016-01-06 2016-10-05 27249 ENSG00000168288 OTTHUMG00000155558 uc002txc.4 BC023995 NM_015702 CCDS2189 Q9H3L0 18385497 MGI:1923786 RGD:1303272 MMADHC database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=MMADHC MMADHC 611935 171059 +HGNC:7152 MMC entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7153 MMD monocyte to macrophage differentiation associated protein-coding gene gene with protein product Approved 17q22 17q22 "MMA|PAQR11" monocyte to macrophage differentiation-associated Progestin and adipoQ receptor family 930 1999-12-07 2016-04-04 2016-04-04 23531 ENSG00000108960 OTTHUMG00000177845 uc002iui.4 X85750 XR_001752463 CCDS11586 Q15546 "7503749|16044242" MGI:1914718 RGD:1592079 MMD 604467 +HGNC:30133 MMD2 monocyte to macrophage differentiation associated 2 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 PAQR10 monocyte to macrophage differentiation-associated 2 Progestin and adipoQ receptor family 930 2004-06-23 2016-03-14 2016-10-05 221938 ENSG00000136297 OTTHUMG00000151844 uc003snn.5 BC037881 NM_198403 "CCDS47529|CCDS47530|CCDS59047" Q8IY49 18769639 MGI:1922354 RGD:1306506 MMD2 614581 +HGNC:7154 MME membrane metalloendopeptidase protein-coding gene gene with protein product Approved 3q25.2 03q25.2 "CALLA|CD10|NEP" "neutral endopeptidase|enkephalinase|neprilysin" CD molecules 471 1989-05-15 2016-08-09 2016-08-09 4311 ENSG00000196549 OTTHUMG00000158455 uc010hvr.2 NM_000902 CCDS3172 P08473 MGI:97004 RGD:3098 MME 120520 459043 M13.001 objectId:1611 CD10 3.4.24.11 +HGNC:40376 MME-AS1 MME antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.2 03q25.2 MME antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100873918 ENSG00000240666 OTTHUMG00000158456 uc062pfa.1 +HGNC:14668 MMEL1 membrane metalloendopeptidase like 1 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "SEP|NL1|NL2|NEPII" MMEL2 membrane metallo-endopeptidase-like 2 2001-02-28 2016-08-10 2016-10-05 79258 ENSG00000142606 OTTHUMG00000000846 uc001ajy.3 AF336981 NM_033467 CCDS30569 Q495T6 MGI:1351603 RGD:1309299 MMEL1 239881 M13.008 +HGNC:28100 MMGT1 membrane magnesium transporter 1 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 EMC5 ER membrane protein complex subunit 5 TMEM32 transmembrane protein 32 2004-07-28 2008-11-21 2008-11-21 2014-11-19 93380 ENSG00000169446 OTTHUMG00000022499 uc004ezi.2 AL157477 NM_173470 CCDS14653 Q8N4V1 "18057121|22119785" MGI:2384305 RGD:1566339 MMGT1 +HGNC:7155 MMP1 matrix metallopeptidase 1 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 interstitial collagenase CLG matrix metalloproteinase 1 (interstitial collagenase) "Endogenous ligands|Matrix metallopeptidases" "542|891" 1986-01-01 2015-02-23 2015-02-23 4312 ENSG00000196611 OTTHUMG00000048192 uc001phi.3 X54925 NM_002421 CCDS8322 P03956 "MGI:1933846|MGI:1933847" RGD:1307917 MMP1 120353 306110 M10.001 objectId:1628 3.4.24.7 +HGNC:7166 MMP2 matrix metallopeptidase 2 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 TBE-1 "CLG4|CLG4A" matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) Matrix metallopeptidases 891 1989-05-25 2015-02-23 2015-02-23 4313 ENSG00000087245 OTTHUMG00000133202 uc002ehz.5 NM_004530 "CCDS10752|CCDS45487|CCDS76869" P08253 MGI:97009 RGD:621316 MMP2 120360 123439 M10.003 objectId:1629 3.4.24.24 +HGNC:7173 MMP3 matrix metallopeptidase 3 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 "STMY1|STMY" "matrix metalloproteinase 3 (stromelysin 1, progelatinase)|stromelysin 1" Matrix metallopeptidases 891 2001-06-22 2015-02-23 2016-10-05 4314 ENSG00000149968 OTTHUMG00000048254 uc001phj.2 X05232 NM_002422 CCDS8323 P08254 MGI:97010 RGD:621317 MMP3 185250 M10.005 objectId:1630 3.4.24.17 +HGNC:7174 MMP7 matrix metallopeptidase 7 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 PUMP-1 matrilysin MPSL1 matrix metalloproteinase 7 (matrilysin, uterine) Matrix metallopeptidases 891 1991-07-15 2015-02-23 2015-08-25 4316 ENSG00000137673 OTTHUMG00000048193 uc001phb.4 Z11887 NM_002423 CCDS8317 P09237 8978768 MGI:103189 RGD:3100 MMP7 178990 M10.008 objectId:1631 3.4.24.23 +HGNC:7175 MMP8 matrix metallopeptidase 8 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 CLG1 matrix metalloproteinase 8 (neutrophil collagenase) Matrix metallopeptidases 891 1991-09-11 2015-02-23 2015-08-25 4317 ENSG00000118113 OTTHUMG00000167587 uc001phe.2 J05556 NM_002424 CCDS8320 P22894 MGI:1202395 RGD:631408 MMP8 120355 M10.002 objectId:1632 3.4.24.34 +HGNC:7176 MMP9 matrix metallopeptidase 9 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 CLG4B matrix metalloproteinase 9 (gelatinase B, 92kDa gelatinase, 92kDa type IV collagenase) Matrix metallopeptidases 891 1990-03-14 2015-02-23 2015-02-23 4318 ENSG00000100985 OTTHUMG00000033044 uc002xqz.3 NM_004994 CCDS13390 P14780 2158484 MGI:97011 RGD:621320 MMP9 120361 208342 M10.004 objectId:1633 3.4.24.35 +HGNC:7156 MMP10 matrix metallopeptidase 10 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 STMY2 "matrix metalloproteinase 10 (stromelysin 2)|stromelysin 2" Matrix metallopeptidases 891 1990-07-06 2015-02-23 2016-10-05 4319 ENSG00000166670 OTTHUMG00000168083 uc001phg.3 X07820 NM_002425 CCDS8321 P09238 MGI:97007 RGD:620192 MMP10 185260 M10.006 objectId:1634 3.4.24.22 +HGNC:7157 MMP11 matrix metallopeptidase 11 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 STMY3 "matrix metalloproteinase 11 (stromelysin 3)|stromelysin 3" Matrix metallopeptidases 891 1991-09-24 2015-02-23 2015-02-23 4320 ENSG00000099953 OTTHUMG00000150742 uc002zxx.4 NM_005940 CCDS13816 P24347 "1639418|7657606|12006591" MGI:97008 RGD:3099 MMP11 185261 M10.007 objectId:1635 +HGNC:7158 MMP12 matrix metallopeptidase 12 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 HME macrophage elastase matrix metalloproteinase 12 (macrophage elastase) Matrix metallopeptidases 891 1994-03-18 2015-02-23 2015-02-23 4321 ENSG00000262406 OTTHUMG00000165848 uc031yde.2 L23808 NM_002426 CCDS73375 P39900 MGI:97005 RGD:620195 MMP12 601046 M10.009 objectId:1636 +HGNC:7159 MMP13 matrix metallopeptidase 13 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 CLG3 collagenase 3 matrix metalloproteinase 13 (collagenase 3) "Endogenous ligands|Matrix metallopeptidases" "542|891" 1994-11-20 2015-02-23 2016-10-05 4322 ENSG00000137745 OTTHUMG00000165850 uc001phl.4 X75308 NM_002427 CCDS8324 P45452 8207000 MGI:1340026 RGD:620196 MMP13 600108 123436 M10.013 objectId:1637 +HGNC:7160 MMP14 matrix metallopeptidase 14 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 MT1-MMP membrane type 1 metalloprotease "matrix metalloproteinase 14 (membrane-inserted)|matrix metallopeptidase 14 (membrane-inserted)" Matrix metallopeptidases 891 1994-11-20 2015-12-16 2016-10-05 4323 ENSG00000157227 OTTHUMG00000028704 uc001whc.5 NM_004995 CCDS9577 P50281 8015608 MGI:101900 RGD:620198 MMP14 600754 314731 M10.014 objectId:1638 +HGNC:7161 MMP15 matrix metallopeptidase 15 protein-coding gene gene with protein product Approved 16q21 16q21 "MT2-MMP|MTMMP2|SMCP-2" "matrix metalloproteinase 15 (membrane-inserted)|matrix metallopeptidase 15 (membrane-inserted)" Matrix metallopeptidases 891 1996-11-13 2015-12-04 2016-10-05 4324 ENSG00000102996 OTTHUMG00000133466 uc002ena.4 Z48482 NM_002428 CCDS10792 P51511 "9070935|9119382" MGI:109320 RGD:1308937 MMP15 602261 M10.015 objectId:1639 +HGNC:7162 MMP16 matrix metallopeptidase 16 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "MT3-MMP|DKFZp761D112" C8orf57 "matrix metalloproteinase 16 (membrane-inserted)|chromosome 8 open reading frame 57|matrix metallopeptidase 16 (membrane-inserted)" Matrix metallopeptidases 891 1996-11-13 2015-12-16 2016-10-05 4325 ENSG00000156103 OTTHUMG00000163769 uc003yeb.5 D85511 NM_005941 CCDS6246 P51512 7559440 MGI:1276107 RGD:620199 MMP16 602262 M10.016 objectId:1640 +HGNC:7163 MMP17 matrix metallopeptidase 17 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 MT4-MMP "matrix metalloproteinase 17 (membrane-inserted)|matrix metallopeptidase 17 (membrane-inserted)" Matrix metallopeptidases 891 1996-11-13 2015-12-04 2016-10-05 4326 ENSG00000198598 OTTHUMG00000168050 uc001ujc.2 X89576 NM_016155 CCDS31927 Q9ULZ9 9878265 MGI:1346076 RGD:1311541 MMP17 602285 M10.017 objectId:1641 +HGNC:7165 MMP19 matrix metallopeptidase 19 protein-coding gene gene with protein product Approved 12q14 12q14 RASI-1 MMP18 matrix metalloproteinase 19 Matrix metallopeptidases 891 1998-01-16 2005-08-08 2015-08-25 4327 ENSG00000123342 OTTHUMG00000170216 uc001sib.5 X92521 NM_002429 "CCDS8895|CCDS61146" Q99542 9232430 MGI:1927899 RGD:1311376 MMP19 601807 M10.021 objectId:1642 +HGNC:7167 MMP20 matrix metallopeptidase 20 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 enamelysin matrix metalloproteinase 20 (enamelysin) Matrix metallopeptidases 891 1999-07-23 2008-05-22 2014-11-19 9313 ENSG00000137674 OTTHUMG00000168081 uc001phc.3 Y12779 NM_004771 CCDS8318 O60882 9398237 MGI:1353466 RGD:1308730 MMP20 604629 139176 M10.019 objectId:1643 +HGNC:14357 MMP21 matrix metallopeptidase 21 protein-coding gene gene with protein product Approved 10q26.2 10q26.2 matrix metalloproteinase 21 Matrix metallopeptidases 891 2001-01-25 2005-08-08 2016-10-05 118856 ENSG00000154485 OTTHUMG00000019235 uc001liu.5 AF331526 NM_147191 CCDS7647 Q8N119 11255011 MGI:2664387 RGD:1309332 MMP21 608416 445555 M10.026 objectId:1644 +HGNC:7170 MMP23A matrix metallopeptidase 23A (pseudogene) pseudogene pseudogene Approved 1p36.33 01p36.33 MIFR MMP21 "matrix metalloproteinase 23A|matrix metallopeptidase 23A" "Immunoglobulin like domain containing|Matrix metallopeptidases" "594|891" 1999-08-26 2007-08-09 2016-10-05 8511 ENSG00000215914 OTTHUMG00000000585 NR_002946 O75900 "9740677|9750192" 603320 M10.037 +HGNC:7171 MMP23B matrix metallopeptidase 23B protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "MIFR|MIFR-1" "matrix metalloproteinase 22|femalysin|matrix metalloproteinase in the female reproductive tract" MMP22 matrix metalloproteinase 23B "Immunoglobulin like domain containing|Matrix metallopeptidases" "594|891" 1999-08-26 2005-08-08 2016-10-05 8510 ENSG00000189409 OTTHUMG00000074713 uc057bhg.1 NM_006983 CCDS30559 O75900 "9740677|9750192" MGI:1347361 RGD:620201 MMP23B 603321 M10.022 objectId:1645 +HGNC:7172 MMP24 matrix metallopeptidase 24 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 MT5-MMP membrane-type 5 matrix metalloproteinase "matrix metalloproteinase 24 (membrane-inserted)|matrix metallopeptidase 24 (membrane-inserted)" Matrix metallopeptidases 891 1999-08-06 2015-12-16 2016-10-05 10893 ENSG00000125966 OTTHUMG00000032330 uc002xbu.3 AF131284 NM_006690 CCDS46593 Q9Y5R2 10363975 MGI:1341867 RGD:620202 MMP24 604871 M10.023 objectId:1646 +HGNC:44421 MMP24-AS1 MMP24 antisense RNA 1 other unknown Approved 20q11.22 20q11.22 2012-10-08 2016-07-20 101410538 ENSG00000126005 OTTHUMG00000032333 uc031rsv.3 "BG546906|DA451679" NR_102705 +HGNC:14246 MMP25 matrix metallopeptidase 25 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MT6-MMP "MMPL1|MMP20" "matrix metalloproteinase 25|matrix metallopeptidase-like 1" Matrix metallopeptidases 891 2000-12-13 2005-08-08 2015-09-03 64386 ENSG00000008516 OTTHUMG00000177475 uc002cth.4 AF145442 NM_022468 CCDS10492 Q9NPA2 "10628838|10706098" MGI:2443938 RGD:1308298 MMP25 608482 M10.024 objectId:1647 +HGNC:51372 MMP25-AS1 MMP25 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 2014-10-16 2014-10-16 100507419 ENSG00000261971 OTTHUMG00000177474 "BC026114|AK124978" NR_123723 +HGNC:14249 MMP26 matrix metallopeptidase 26 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "endometase|MGC126590|MGC126592" matrilysin 2 matrix metalloproteinase 26 Matrix metallopeptidases 891 2000-12-13 2005-08-08 2016-10-05 56547 ENSG00000167346 OTTHUMG00000066442 uc001lzv.4 AF230354 NM_021801 CCDS7752 Q9NRE1 "10801841|10824119" MMP26 605470 M10.029 objectId:1648 3.4.24.1 +HGNC:14250 MMP27 matrix metallopeptidase 27 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 matrix metalloprotease 27 matrix metalloproteinase 27 Matrix metallopeptidases 891 2000-12-13 2005-08-08 2016-10-05 64066 ENSG00000137675 OTTHUMG00000168099 uc001phd.2 AF195192 NM_022122 CCDS8319 Q9H306 10419448 MGI:3039232 RGD:1306642 MMP27 M10.027 objectId:1649 +HGNC:14366 MMP28 matrix metallopeptidase 28 protein-coding gene gene with protein product Approved 17q12 17q12 "MMP-25|MM28|EPILYSIN|MMP-28" matrix metalloproteinase 28 Matrix metallopeptidases 891 2001-01-09 2005-08-08 2014-11-19 79148 ENSG00000271447 OTTHUMG00000188387 uc032fbc.2 AF315683 NM_024302 "CCDS45651|CCDS74036|CCDS76996" Q9H239 "11121398|11255011" MGI:2153062 RGD:1311573 MMP28 608417 M10.030 objectId:1650 +HGNC:7178 MMRN1 multimerin 1 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "ECM|EMILIN4|GPIa*" glycoprotein Ia* MMRN multimerin EMI domain containing 540 2000-01-12 2004-03-02 2004-03-02 2016-10-05 22915 ENSG00000138722 OTTHUMG00000130947 uc003hst.4 U27109 NM_007351 CCDS3635 Q13201 "7629143|10828608" MGI:1918195 RGD:1587248 MMRN1 601456 +HGNC:19888 MMRN2 multimerin 2 protein-coding gene gene with protein product Approved 10q23.2 10q23.2 "EndoGlyx-1|FLJ13465" EMILIN3 elastin microfibril interfacer 3 EMI domain containing 540 2003-07-16 2004-03-02 2004-03-02 2016-10-05 79812 ENSG00000173269 OTTHUMG00000018663 uc001kea.4 AK023527 NM_024756 CCDS7379 Q9H8L6 11559704 MGI:2385618 RGD:1311461 MMRN2 608925 +HGNC:13824 MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "MET18|hMMS19" MET18 homolog (S. cerevisiae) MMS19L MMS19 nucleotide excision repair homolog (S. cerevisiae) "Cytosolic iron-sulfur assembly components|Nucleotide excision repair" "1028|1269" 2000-12-21 2007-08-15 2015-07-02 2016-10-05 64210 ENSG00000155229 OTTHUMG00000018857 uc001knt.5 AF007151 XM_017016515 "CCDS7464|CCDS73177|CCDS81493" Q96T76 "11071939|22678362|22678361" MGI:1919449 RGD:727890 MMS19 614777 +HGNC:21475 MMS22L MMS22 like, DNA repair protein protein-coding gene gene with protein product Approved 6q16.1 06q16.1 dJ39B17.2 C6orf167 "chromosome 6 open reading frame 167|MMS22-like, DNA repair protein" 2003-11-26 2010-11-11 2015-11-23 2016-10-05 253714 ENSG00000146263 OTTHUMG00000015248 uc003ppb.3 NM_198468 CCDS5039 Q6ZRQ5 "21055983|21055984" MGI:2684980 RGD:1304693 MMS22L 615614 +HGNC:19144 MMVP1 myxomatous mitral valve prolapse 1 phenotype phenotype only Approved 16p12.1-p11.2 16p12.1-p11.2 2003-04-23 2007-05-01 50951 10521289 157700 +HGNC:19145 MMVP2 myxomatous mitral valve prolapse 2 phenotype phenotype only Approved 11p15.4 11p15.4 2003-04-23 2003-04-23 352956 12707861 +HGNC:7180 MN1 MN1 proto-oncogene, transcriptional regulator protein-coding gene gene with protein product Approved 22q12.1 22q12.1 "MGCR1-PEN|MGCR1" probable tumor suppressor protein MN1 MGCR "meningioma chromosome region|meningioma (disrupted in balanced translocation) 1" 1998-06-08 2016-06-13 2016-06-13 4330 ENSG00000169184 OTTHUMG00000150975 uc003adj.3 X82209 NM_002430 CCDS42998 Q10571 "7731706|12569362" MGI:1261813 RGD:1565571 MN1 156100 445669 +HGNC:7181 MNAT1 MNAT1, CDK activating kinase assembly factor protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "MAT1|RNF66" CDK-activating kinase assembly factor "menage a trois 1 (CAK assembly factor)|menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis)|MNAT CDK-activating kinase assembly factor 1" "Ring finger proteins|Nucleotide excision repair" "58|1269" 1997-10-09 2016-03-07 2016-10-05 4331 ENSG00000020426 OTTHUMG00000152340 uc001xfd.4 X87843 NM_002431 "CCDS9750|CCDS53899" P51948 9465303 MGI:106207 RGD:628874 MNAT1 602659 +HGNC:24839 MND1 meiotic nuclear divisions 1 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 GAJ meiotic nuclear divisions 1 homolog (S. cerevisiae) 2006-02-28 2015-06-26 2015-06-26 84057 ENSG00000121211 OTTHUMG00000161523 uc003ink.3 AY028916 NM_032117 "CCDS3782|CCDS75202" Q9BWT6 "11940665|16407260" MGI:1924165 RGD:1309007 MND1 611422 +HGNC:7183 MNDA myeloid cell nuclear differentiation antigen protein-coding gene gene with protein product Approved 1q23.1 01q23.1 PYHIN3 "Pyrin domain containing|Pyrin and HIN domain family" "994|995" 1993-06-29 2016-10-05 4332 ENSG00000163563 OTTHUMG00000022776 uc001fsz.2 BC032319 NM_002432 CCDS1177 P41218 "1644857|7512843" RGD:1306089 MNDA 159553 +HGNC:29636 MNS1 meiosis specific nuclear structural 1 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "FLJ11222|SPATA40" spermatogenesis associated 40 2005-07-20 2015-11-23 2015-11-23 55329 ENSG00000138587 OTTHUMG00000132034 uc002adr.2 AK002084 NM_018365 CCDS10158 Q8NEH6 "7625268|8032679" MGI:107933 RGD:1549718 MNS1 610766 +HGNC:7188 MNT MAX network transcriptional repressor protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "ROX|MXD6|MAD6|bHLHd3" "myc antagonist|Max-interacting protein" "MAX binding protein|MNT, MAX dimerization protein" "Basic helix-loop-helix proteins|MAX dimerization proteins" "420|637" 1998-07-15 2013-11-15 2014-11-18 4335 ENSG00000070444 OTTHUMG00000090603 uc002fur.4 Y13444 NM_020310 CCDS11018 Q99583 9598315 MGI:109150 RGD:1308683 MNT 603039 +HGNC:4979 MNX1 motor neuron and pancreas homeobox 1 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "HB9|HOXHB9|SCRA1" HLXB9 "homeo box HB9|homeobox HB9" HOXL subclass homeoboxes 518 1994-12-13 2007-08-09 2007-08-09 2016-10-05 3110 ENSG00000130675 OTTHUMG00000157181 uc064jri.1 AF107457 NM_001165255 "CCDS34788|CCDS55187" P50219 9843207 MGI:109160 RGD:1588091 MNX1 142994 8555 138820 +HGNC:48954 MNX1-AS1 MNX1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 7q36.3 07q36.3 CCAT5 2013-07-23 2016-07-13 645249 ENSG00000243479 OTTHUMG00000188695 NR_038835 25663692 +HGNC:40278 MNX1-AS2 MNX1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 7q36.3 07q36.3 2013-07-23 2015-07-30 105375606 ENSG00000235029 OTTHUMG00000187957 AI761375 XR_928257 +HGNC:16658 MOAP1 modulator of apoptosis 1 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "MAP-1|PNMA4" paraneoplastic Ma antigen family member 4 Paraneoplastic Ma antigens 671 2002-11-13 2014-11-19 64112 ENSG00000165943 OTTHUMG00000169184 uc001ybj.4 BC015044 NM_022151 CCDS9908 Q96BY2 11060313 MGI:1915555 RGD:1307230 MOAP1 609485 +HGNC:16015 MOB1A MOB kinase activator 1A protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "FLJ10788|MOB1|FLJ11595|Mob4B|Mats1" "C2orf6|MOBK1B|MOBKL1B" "chromosome 2 open reading frame 6|MOB1, Mps One Binder kinase activator-like 1B (yeast)|MOB1 Mps One Binder homolog A (yeast)" MOB kinase activators 647 2001-06-29 2011-09-27 2011-09-28 2014-11-18 55233 ENSG00000114978 OTTHUMG00000152833 uc002skh.5 NM_018221 CCDS46340 Q9H8S9 "11319234|20624913" MGI:2442631 RGD:1307014 MOB1A 609281 +HGNC:42638 MOB1AP1 MOB kinase activator 1A pseudogene 1 pseudogene pseudogene Approved 13q31.1 13q31.1 MOBKL1BP1 "MOB1, Mps One Binder kinase activator-like 1B (yeast) pseudogene 1|MOB1 Mps One Binder homolog A (yeast) pseudogene 1" 2011-08-10 2011-09-27 2011-10-19 2014-11-18 100873874 ENSG00000228241 OTTHUMG00000017158 NG_032520 PGOHUM00000248654 +HGNC:42639 MOB1AP2 MOB kinase activator 1A pseudogene 2 pseudogene pseudogene Approved Xp21.1 Xp21.1 MOBKL1BP2 "MOB1, Mps One Binder kinase activator-like 1B (yeast) pseudogene 2|MOB1 Mps One Binder homolog A (yeast) pseudogene 2" 2011-08-10 2011-09-27 2011-10-19 2014-11-18 100873854 ENSG00000233810 OTTHUMG00000021358 NG_032521 PGOHUM00000241707 +HGNC:29801 MOB1B MOB kinase activator 1B protein-coding gene gene with protein product Approved 4q13.3 04q13.3 MOB4A Mob4A protein MOBKL1A "MOB1, Mps One Binder kinase activator-like 1A (yeast)|MOB1 Mps One Binder homolog B (yeast)" MOB kinase activators 647 2004-02-11 2011-09-27 2011-09-28 2015-08-25 92597 ENSG00000173542 OTTHUMG00000160844 uc003hfw.4 BC038112 NM_173468 "CCDS34002|CCDS58903" Q7L9L4 15067004 MGI:1915723 RGD:1305114 609282 +HGNC:24904 MOB2 MOB kinase activator 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 HCCA2 MOB2 Mps One Binder homolog (yeast) MOB kinase activators 647 2011-09-28 2015-08-25 81532 ENSG00000182208 OTTHUMG00000165545 uc010qwz.3 NM_053005 CCDS53591 Q70IA6 "11223154|15067004" MGI:1919891 RGD:1562983 MOB2 611969 +HGNC:29802 MOB3A MOB kinase activator 3A protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MOB1C|MOB-LAK|moblak" MOB LAK MOBKL2A MOB1, Mps One Binder kinase activator-like 2A (yeast) MOB kinase activators 647 2004-02-11 2011-09-28 2011-09-28 2015-09-03 126308 ENSG00000172081 OTTHUMG00000180353 uc002luv.4 AK095471 NM_130807 CCDS12081 Q96BX8 12477932 MGI:3050117 RGD:1308187 +HGNC:23825 MOB3B MOB kinase activator 3B protein-coding gene gene with protein product Approved 9p21.2 09p21.2 "MOB1D|FLJ13204" monopolar spindle 1 binding, MOB1, domain containing "MOBKL2B|C9orf35" "MOB1, Mps One Binder kinase activator-like 2B (yeast)|chromosome 9 open reading frame 35" MOB kinase activators 647 2004-02-11 2011-09-28 2011-09-28 2016-10-05 79817 ENSG00000120162 OTTHUMG00000019717 uc003zqn.4 AK023266 NM_024761 CCDS6520 Q86TA1 12477932 MGI:2664539 RGD:1560696 +HGNC:29800 MOB3C MOB kinase activator 3C protein-coding gene gene with protein product Approved 1p33 01p33 MOB1E MOBKL2C MOB1, Mps One Binder kinase activator-like 2C (yeast) MOB kinase activators 647 2004-02-11 2011-09-28 2011-09-28 2016-10-05 148932 ENSG00000142961 OTTHUMG00000007989 uc001cqf.4 AK091808 NM_145279 "CCDS539|CCDS540" Q70IA8 12477932 MGI:2140623 RGD:1307821 MOB3C +HGNC:17261 MOB4 MOB family member 4, phocein protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "MOB3|DKFZP564M112|CGI-95|2C4D|PHOCN" "phocein|phocein, Mob-like protein" "PREI3|MOBKL3" "preimplantation protein 3|MOB1, Mps One Binder kinase activator-like 3 (yeast)" MOB kinase activators 647 2002-01-16 2011-09-28 2011-09-28 2014-11-19 25843 ENSG00000115540 OTTHUMG00000132748 uc002uun.5 AF151853 NM_015387 "CCDS2321|CCDS2322|CCDS46480" Q9Y3A3 "17853115|10810093|11230166|11319234" MGI:104899 RGD:620183 609361 +HGNC:7189 MOBP myelin-associated oligodendrocyte basic protein protein-coding gene gene with protein product Approved 3p22.1 03p22.1 1996-09-13 2016-10-05 4336 ENSG00000168314 OTTHUMG00000131347 uc003cjv.5 D28113 "NM_006501|NM_182934|NM_182935" "CCDS2687|CCDS63598|CCDS2688" Q13875 7989345 MGI:108511 RGD:3101 MOBP 600948 +HGNC:18234 MOCOS molybdenum cofactor sulfurase protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "HMCS|FLJ20733|MOS" 2003-12-18 2016-10-05 55034 ENSG00000075643 OTTHUMG00000132590 uc002kzq.5 AK000740 NM_017947 CCDS11919 Q96EN8 11302742 MGI:1915841 RGD:1308496 MOCOS 613274 123447 +HGNC:7190 MOCS1 molybdenum cofactor synthesis 1 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 MOCOD 1998-07-23 2015-08-25 4337 ENSG00000124615 OTTHUMG00000014656 uc063oip.1 AJ224328 NM_005943 "CCDS4846|CCDS43460" Q9NZB8 "9731530|10053004" MGI:1928904 RGD:1308471 MOCS1 603707 123452 +HGNC:7191 MOCS1P1 molybdenum cofactor synthesis 1 pseudogene 1 pseudogene pseudogene Approved 16q12.1 16q12.1 MOCS1P2 molybdenum cofactor synthesis 1 pseudogene 2 2000-01-20 2014-11-19 27187 ENSG00000260347 OTTHUMG00000175420 AJ272089 NG_001271 PGOHUM00000249122 +HGNC:7193 MOCS2 molybdenum cofactor synthesis 2 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 MOCO1 1998-07-23 2016-10-05 4338 ENSG00000164172 OTTHUMG00000096981 uc003joz.5 AF117815 NM_183418 "CCDS3958|CCDS47205" "O96007|O96033" "10053004|9889283" MGI:1336894 RGD:1359477 MOCS2 603708 123455 +HGNC:15765 MOCS3 molybdenum cofactor synthesis 3 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "UBA4|dJ914P20.3" "ubiquitin-like modifier activating enzyme 4|UBA4, ubiquitin-activating enzyme E1 homolog (yeast)" Ubiquitin like modifier activating enzymes 100 2001-09-17 2014-11-18 27304 ENSG00000124217 OTTHUMG00000032741 uc002xvy.3 AF102544 NM_014484 CCDS13435 O95396 15910006 MGI:1916622 RGD:1307044 MOCS3 609277 +HGNC:20021 MOCS3P1 molybdenum cofactor synthesis 3 pseudogene 1 pseudogene pseudogene Approved 14q23.1 14q23.1 MOCS3P molybdenum cofactor synthesis 3 pseudogene 2003-01-13 2010-02-25 2010-02-25 2014-11-18 326305 NG_002557 PGOHUM00000248197 +HGNC:39444 MOCS3P2 molybdenum cofactor synthesis 3 pseudogene 2 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-01-11 2011-01-11 100420520 NG_024852 PGOHUM00000248388 +HGNC:7197 MOG myelin oligodendrocyte glycoprotein protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "BTN6|BTNL11" "Butyrophilins|V-set domain containing" "458|590" 1994-03-30 2016-04-25 4340 ENSG00000204655 OTTHUMG00000031099 uc011ifj.3 NM_002433 "CCDS34366|CCDS34367|CCDS34368|CCDS34369|CCDS34370|CCDS4667|CCDS47394|CCDS47395|CCDS54977" Q16653 MGI:97435 RGD:3102 MOG 159465 285128 +HGNC:18210 MOGAT1 monoacylglycerol O-acyltransferase 1 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "DGAT2L|MGAT1" DGAT2L1 diacylglycerol O-acyltransferase 2 like 1 Diacylglycerol O-acyltransferase 2 family 1235 2002-04-10 2004-05-28 2004-05-28 2016-10-05 116255 ENSG00000124003 OTTHUMG00000153394 uc010fws.2 AF384163 NM_058165 CCDS46524 Q96PD6 14970677 MGI:1915643 RGD:1311644 MOGAT1 610268 +HGNC:23248 MOGAT2 monoacylglycerol O-acyltransferase 2 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "MGAT2|DGAT2L5|FLJ22644" Diacylglycerol O-acyltransferase 2 family 1235 2004-05-14 2014-11-19 80168 ENSG00000166391 OTTHUMG00000165341 uc010rru.3 AY157608 NM_025098 CCDS8240 Q3SYC2 14970677 MGI:2663253 RGD:1598060 MOGAT2 610270 objectId:2881 +HGNC:23249 MOGAT3 monoacylglycerol O-acyltransferase 3 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "DC7|MGAT3|DGAT2L2" Diacylglycerol O-acyltransferase 2 family 1235 2004-05-14 2016-10-05 346606 ENSG00000106384 OTTHUMG00000023328 uc003uyc.5 AY229854 NM_178176 "CCDS5714|CCDS75643" Q86VF5 "12618427|14970677" RGD:1592588 MOGAT3 610184 "2.3.1.20|2.3.1.22" +HGNC:24862 MOGS mannosyl-oligosaccharide glucosidase protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "GCS1|CWH41|DER7" "glucosidase I|processing A-glucosidase I" 2009-03-24 2014-11-19 7841 ENSG00000115275 OTTHUMG00000152886 uc010ffj.3 X87237 NM_006302 "CCDS42700|CCDS54370" Q13724 "7635146|8786151" MGI:1929872 RGD:69240 MOGS 601336 183883 3.2.1.106 +HGNC:9833 MOK MOK protein kinase protein-coding gene gene with protein product Approved 14q32.31 14q32.31 "RAGE1|STK30" RAGE renal tumor antigen 1995-05-10 2011-09-06 2011-09-06 2016-10-05 5891 ENSG00000080823 OTTHUMG00000164896 uc001ylm.5 AB022694 XM_017021549 "CCDS9971|CCDS61552|CCDS81854" Q9UQ07 "8781117|10421840" MGI:1336881 RGD:1309274 MOK 605762 objectId:2107 +HGNC:28207 MON1A MON1 homolog A, secretory trafficking associated protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "MGC13272|SAND1" "MON1 homolog A (yeast)|MON1 secretory trafficking family member A" 2005-03-02 2015-11-27 2015-11-27 84315 ENSG00000164077 OTTHUMG00000156737 uc003cxz.4 AK074404 NM_032355 "CCDS2808|CCDS46830" Q86VX9 12477932 MGI:1920075 RGD:1308823 MON1A 611464 +HGNC:25020 MON1B MON1 homolog B, secretory trafficking associated protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "SAND2|HSRG1|KIAA0872" "MON1 homolog B (yeast)|MON1 secretory trafficking family member B" 2005-03-02 2015-11-27 2015-11-27 22879 ENSG00000103111 OTTHUMG00000137618 uc002fez.5 BC024277 NM_014940 "CCDS10925|CCDS67082|CCDS67083" Q7L1V2 10048485 MGI:1923231 RGD:1309977 MON1B 608954 +HGNC:29177 MON2 MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding gene gene with protein product Approved 12q14.1 12q14.1 KIAA1040 "MON2 homolog (yeast)|MON2 homolog (S. cerevisiae)" 2006-01-20 2015-07-02 2015-07-02 23041 ENSG00000061987 OTTHUMG00000169992 uc001sre.4 NM_015026 "CCDS31849|CCDS61175|CCDS61177|CCDS61178" Q7Z3U7 "16301316|24285343" MGI:1914324 RGD:1308808 MON2 616822 +HGNC:7198 MORC1 MORC family CW-type zinc finger 1 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 "ZCW6|CT33" cancer/testis antigen 33 MORC "microrchidia (mouse) homolog|microrchidia homolog (mouse)" Zinc fingers CW-type 96 2000-01-20 2005-06-15 2005-06-15 2016-10-05 27136 ENSG00000114487 OTTHUMG00000159209 uc003dxl.4 AF084946 XM_017006169 CCDS2955 Q86VD1 10369865 MGI:1316740 RGD:1565610 MORC1 603205 +HGNC:40377 MORC1-AS1 MORC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.13 03q13.13 MORC1 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100506506 ENSG00000239314 OTTHUMG00000159211 uc062mhf.1 +HGNC:23573 MORC2 MORC family CW-type zinc finger 2 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "ZCW3|KIAA0852|AC004542.C22.1" ZCWCC1 "zinc finger, CW-type with coiled-coil domain 1|zinc finger, CW type with coiled-coil domain 1" Zinc fingers CW-type 96 2003-11-24 2005-06-15 2005-06-15 2015-09-03 22880 ENSG00000133422 OTTHUMG00000151193 uc062dgc.1 AB020659 NM_014941 "CCDS33636|CCDS77668" Q9Y6X9 14607086 MGI:1921772 RGD:1310842 MORC2 616661 +HGNC:26662 MORC2-AS1 MORC2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q12.2 22q12.2 FLJ35801 "C22orf27|NCRNA00325" "chromosome 22 open reading frame 27|non-protein coding RNA 325|MORC2 antisense RNA 1 (non-protein coding)" 2006-06-27 2011-05-04 2012-08-15 2014-11-19 150291 ENSG00000235989 OTTHUMG00000150197 uc003ajd.4 AK093120 NR_026920 +HGNC:23572 MORC3 MORC family CW-type zinc finger 3 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 "ZCW5|NXP2|KIAA0136" ZCWCC3 "zinc finger, CW-type with coiled-coil domain 3|zinc finger, CW type with coiled-coil domain 3" Zinc fingers CW-type 96 2003-11-24 2005-06-15 2005-06-15 2016-10-05 23515 ENSG00000159256 OTTHUMG00000086620 uc002yvi.3 AK025327 NM_015358 CCDS42924 Q14149 14607086 MGI:2136841 RGD:1307924 MORC3 610078 +HGNC:23485 MORC4 MORC family CW-type zinc finger 4 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "ZCW4|FLJ11565" ZCWCC2 "zinc finger, CW-type with coiled-coil domain 2|zinc finger, CW type with coiled-coil domain 2" Zinc fingers CW-type 96 2003-11-24 2005-06-15 2005-06-15 2015-08-25 79710 ENSG00000133131 OTTHUMG00000022155 uc004emu.4 AK021627 NM_024657 "CCDS14525|CCDS48146" Q8TE76 14607086 MGI:1922996 RGD:1559905 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MORC4 MORC4 300970 +HGNC:15773 MORF4 mortality factor 4 (pseudogene) pseudogene pseudogene Approved 4q34.1 04q34.1 "SEN|SEN1" "senescence (cellular)-related 1|mortality factor 4" 2003-02-10 2011-01-27 2015-02-27 2015-02-27 10934 ENSG00000234801 OTTHUMG00000153241 AF100614 NM_006792 "9891081|2062841|12407449" 116960 PGOHUM00000245773 +HGNC:16989 MORF4L1 mortality factor 4 like 1 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "MRG15|MORFRG15|HsT17725|Eaf3|MEAF3" "MORF-related gene on chromosome 15|Esa1p-associated factor 3 homolog (S. cerevisiae)" EMSY complex 1243 2003-02-10 2014-11-18 10933 ENSG00000185787 OTTHUMG00000143865 uc002bem.5 AF100615 NM_006791 "CCDS10307|CCDS32304|CCDS58393" Q9UBU8 "8619474|9110174" MGI:1096551 RGD:1307938 MORF4L1 607303 +HGNC:20400 MORF4L1P1 mortality factor 4 like 1 pseudogene 1 pseudogene pseudogene Approved 1q41 01q41 MRG1 MORF4LP1 mortality factor 4 like pseudogene 1 2003-02-10 2010-11-24 2010-11-24 2010-11-24 326591 ENSG00000218283 OTTHUMG00000037285 AF100616 NG_002588 9891081 PGOHUM00000245210 +HGNC:20401 MORF4L1P2 mortality factor 4 like 1 pseudogene 2 pseudogene pseudogene Approved 12p13.2 12p13.2 MORF4LP2 mortality factor 4 like pseudogene 2 2003-02-10 2010-11-24 2010-11-24 2010-11-24 326594 NG_002591 9891081 PGOHUM00000239350 +HGNC:20402 MORF4L1P3 mortality factor 4 like 1 pseudogene 3 pseudogene pseudogene Approved 11p15.2 11p15.2 MRG11 MORF4LP3 mortality factor 4 like pseudogene 3 2003-02-10 2010-11-24 2010-11-24 2010-11-24 326593 AF100619 NG_002590 9891081 PGOHUM00000242175 +HGNC:39257 MORF4L1P4 mortality factor 4 like 1 pseudogene 4 pseudogene pseudogene Approved 13q14.11 13q14.11 2010-11-24 2010-11-24 100420030 ENSG00000225133 OTTHUMG00000016787 NG_024849 PGOHUM00000248380 +HGNC:35425 MORF4L1P5 mortality factor 4 like 1 pseudogene 5 pseudogene pseudogene Approved Xq11.2 Xq11.2 MORF4LP5 mortality factor 4 like pseudogene 5 2010-06-17 2010-11-24 2010-11-24 2014-11-18 100129288 ENSG00000231857 OTTHUMG00000021715 NG_022605 PGOHUM00000262166 +HGNC:39258 MORF4L1P6 mortality factor 4 like 1 pseudogene 6 pseudogene pseudogene Approved Xq13.2 Xq13.2 2010-11-24 2010-11-24 100873878 ENSG00000233162 OTTHUMG00000021832 NG_032238 PGOHUM00000241845 +HGNC:39259 MORF4L1P7 mortality factor 4 like 1 pseudogene 7 pseudogene pseudogene Approved 1q25.2 01q25.2 2010-11-24 2010-11-24 100130637 ENSG00000225904 OTTHUMG00000034989 NG_022744 PGOHUM00000244349 +HGNC:16849 MORF4L2 mortality factor 4 like 2 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "KIAA0026|MRGX" MORF-related gene X EMSY complex 1243 2003-02-10 2016-10-05 9643 ENSG00000123562 OTTHUMG00000022104 uc004elf.4 AF100620 NM_012286 CCDS14512 Q15014 "9891081|7584026" MGI:1927167 RGD:1359471 MORF4L2 300409 +HGNC:27991 MORF4L2-AS1 MORF4L2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq22.2 Xq22.2 MORF4L2 antisense RNA 1 (non-protein coding) 2012-08-02 2012-08-15 2014-11-19 340544 ENSG00000231154 OTTHUMG00000022108 uc004elg.4 BC043382 NR_038978 12477932 +HGNC:20403 MORF4L2P1 mortality factor 4 like 2 pseudogene 1 pseudogene pseudogene Approved 4q12 04q12 MRG4 MORF4LP4 mortality factor 4 like pseudogene 4 2003-02-10 2010-11-24 2010-11-24 2010-11-24 643915 ENSG00000250147 OTTHUMG00000160642 NG_011863 9891081 PGOHUM00000245911 +HGNC:25852 MORN1 MORN repeat containing 1 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 FLJ13941 2005-12-06 2016-10-05 79906 ENSG00000116151 OTTHUMG00000001402 uc001ajb.2 AK024003 NM_024848 "CCDS40|CCDS72688" Q5T089 12477932 MGI:1924116 RGD:1359433 MORN1 +HGNC:30166 MORN2 MORN repeat containing 2 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 MOPT 2005-12-06 2010-06-04 729967 ENSG00000188010 OTTHUMG00000128589 uc010fak.3 AY367766 NM_194270 CCDS46262 Q502X0 12477932 MGI:2674071 RGD:1563988 MORN2 +HGNC:29807 MORN3 MORN repeat containing 3 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 2006-01-17 2015-08-25 283385 ENSG00000139714 OTTHUMG00000169075 uc001uax.4 BC057760 NM_173855 CCDS31917 Q6PF18 25248657 MGI:1922140 RGD:1583091 MORN3 +HGNC:24001 MORN4 MORN repeat containing 4 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "bA548K23.4|FLJ25925|rtp" "44050 protein|retinophilin homolog (Drosophila)" C10orf83 chromosome 10 open reading frame 83 2004-03-04 2008-06-23 2008-06-23 2015-07-15 118812 ENSG00000171160 OTTHUMG00000018861 uc057vgc.1 AJ431726 NM_178832 CCDS7468 Q8NDC4 "22496551|25822849" MGI:2449568 RGD:1307336 MORN4 +HGNC:17841 MORN5 MORN repeat containing 5 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 FLJ46909 "C9orf113|C9orf18" "chromosome 9 open reading frame 113|chromosome 9 open reading frame 18" 2002-01-29 2008-06-23 2008-06-23 2016-10-05 254956 ENSG00000185681 OTTHUMG00000020599 uc004blw.4 AK128877 NM_198469 "CCDS6836|CCDS75894" Q5VZ52 MGI:1922745 RGD:1307739 MORN5 +HGNC:7199 MOS v-mos Moloney murine sarcoma viral oncogene homolog protein-coding gene gene with protein product Approved 8q12.1 08q12.1 2001-06-22 2016-10-05 4342 ENSG00000172680 OTTHUMG00000164299 uc011leb.2 NM_005372 CCDS6164 P00540 9552420 MGI:97052 RGD:3103 MOS 190060 objectId:2108 +HGNC:25235 MOSPD1 motile sperm domain containing 1 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 dJ473B4 2004-02-23 2015-08-25 56180 ENSG00000101928 OTTHUMG00000035315 uc004eyb.4 Z83826 NM_019556 "CCDS14645|CCDS78507" Q9UJG1 15533722 MGI:1917630 RGD:1359486 MOSPD1 300674 +HGNC:28381 MOSPD2 motile sperm domain containing 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 MGC26706 2004-02-23 2016-10-05 158747 ENSG00000130150 OTTHUMG00000021170 uc004cwi.4 AL834345 NM_152581 "CCDS14162|CCDS83457" Q8NHP6 15533722 MGI:1924013 RGD:1563952 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MOSPD2 MOSPD2 +HGNC:25078 MOSPD3 motile sperm domain containing 3 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "CDS3|NET30" 2004-02-23 2016-10-05 64598 ENSG00000106330 OTTHUMG00000159599 uc003uvq.4 BC011653 NM_023948 "CCDS5701|CCDS47662" O75425 15533722 MGI:1916179 RGD:1304973 MOSPD3 609125 +HGNC:7200 MOV10 Mov10 RISC complex RNA helicase protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "gb110|MGC2948|fSAP113" functional spliceosome-associated protein 113 "Mov10 (Moloney leukemia virus 10, mouse) homolog|Mov10, Moloney leukemia virus 10, homolog (mouse)" UPF1 like RNA helicases 1169 1996-12-19 2014-07-02 2014-11-19 4343 ENSG00000155363 OTTHUMG00000011906 uc001ecn.5 AL833353 NM_020963 "CCDS853|CCDS65615" Q9HCE1 12226669 MGI:97054 RGD:1598327 MOV10 610742 +HGNC:7201 MOV10L1 Mov10 RISC complex RNA helicase like 1 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "DJ402G11.8|DKFZp434B0717|CHAMP" cardiac helicase activated by MEF2C protein "Mov10 (mouse)-like 1|Mov10l1, Moloney leukemia virus 10-like 1, homolog (mouse)" UPF1 like RNA helicases 1169 2000-05-31 2014-07-02 2014-11-19 54456 ENSG00000073146 OTTHUMG00000044648 uc062fjb.1 AF285604 NM_018995 "CCDS14084|CCDS54541|CCDS54542|CCDS54543" Q9BXT6 11279525 MGI:1891384 RGD:1304735 MOV10L1 605794 +HGNC:21063 MOXD1 monooxygenase DBH like 1 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "DKFZP564G202|MOX|dJ248E1.1" monooxygenase, DBH-like 1 2003-06-20 2016-04-06 2016-04-06 26002 ENSG00000079931 OTTHUMG00000055853 uc003qdf.4 AY007239 NM_015529 CCDS5152 Q6UVY6 9751809 MGI:1921582 RGD:1310033 MOXD1 609000 +HGNC:33605 MOXD2P monooxygenase, DBH-like 2, pseudogene pseudogene pseudogene Approved 7q34 07q34 MOXD2 monooxygenase, DBH-like 2 pseudogene 2007-08-16 2010-09-24 2010-09-24 2014-11-18 100289017 ENSG00000240268 OTTHUMG00000158566 NR_024346 A6NHM9 MGI:2388042 RGD:1564286 +HGNC:21606 MPC1 mitochondrial pyruvate carrier 1 protein-coding gene gene with protein product Approved 6q27 06q27 "dJ68L15.3|CGI-129" BRP44L brain protein 44-like 2003-06-26 2012-07-30 2012-07-30 2014-11-19 51660 ENSG00000060762 OTTHUMG00000015999 uc063svb.1 AF125101 NM_016098 "CCDS5293|CCDS75547" Q9Y5U8 22628558 MGI:1915240 RGD:620902 614738 456998 +HGNC:44205 MPC1L mitochondrial pyruvate carrier 1-like protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 2012-07-30 2012-07-30 347411 ENSG00000238205 OTTHUMG00000024105 NM_001195522 CCDS83466 P0DKB6 RGD:1563528 PGOHUM00000241717 +HGNC:24515 MPC2 mitochondrial pyruvate carrier 2 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 DKFZP564B167 BRP44 brain protein 44 2005-05-24 2012-07-30 2012-07-30 2016-10-05 25874 ENSG00000143158 OTTHUMG00000034570 uc001ges.4 NM_015415 CCDS1266 O95563 "3022128|22628558" MGI:1917706 RGD:1563422 614737 +HGNC:7207 MPDU1 mannose-P-dolichol utilization defect 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "SL15|Lec35|PQLC5|CDGIf" 1999-05-25 2016-10-05 9526 ENSG00000129255 OTTHUMG00000108147 uc002ghw.4 AF038961 XM_006721597 "CCDS11115|CCDS82054" O75352 "8663248|9653160|11733564" MGI:1346040 RGD:1307699 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ MPDU1 604041 123458 +HGNC:7208 MPDZ multiple PDZ domain crumbs cell polarity complex component protein-coding gene gene with protein product Approved 9p23 09p23 MUPP1 multiple PDZ domain protein "PDZ domain containing|Crumbs complex" "1220|1223" 1998-12-16 2016-02-22 2016-02-22 8777 ENSG00000107186 OTTHUMG00000021031 uc003zlb.5 AF093419 NM_003829 "CCDS47951|CCDS59119|CCDS59120|CCDS83342" O75970 MGI:1343489 RGD:3105 MPDZ 603785 323471 +HGNC:7209 MPE malignant proliferation, eosinophil phenotype phenotype only Approved 12p13 12p13 1989-03-15 2014-01-31 RGD:1559537 +HGNC:29619 MPEG1 macrophage expressed 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 MPG1 macrophage expressed gene 1 2008-12-02 2013-07-31 219972 ENSG00000197629 OTTHUMG00000162676 uc001nnu.5 AK097211 NM_001039396 CCDS41650 Q2M385 "7888681|23257510" MGI:1333743 RGD:69275 MPEG1 610390 +HGNC:7210 MPFD myopathy with fiber type disproportion phenotype phenotype only Approved 10p11.2 or 17q25 10p11.2 or 17q25 "CFTD|CFTDM" 1995-01-27 2014-11-19 7908614 +HGNC:7211 MPG N-methylpurine DNA glycosylase protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MDG alkyladenine DNA glycosylase DNA glycosylases 1024 1989-12-11 2015-06-23 2015-08-25 4350 ENSG00000103152 OTTHUMG00000047887 uc002cfm.4 NM_002434 "CCDS32345|CCDS32346|CCDS42087" P29372 1874728 MGI:97073 RGD:3106 MPG 156565 3.2.2.21 +HGNC:7214 MPHOSPH6 M-phase phosphoprotein 6 protein-coding gene gene with protein product Approved 16q23.3 16q23.3 MPP6 2000-05-12 2014-11-19 10200 ENSG00000135698 OTTHUMG00000137632 uc002fgw.4 X98263 NM_005792 CCDS10937 Q99547 8885239 MGI:1915783 RGD:1591222 MPHOSPH6 605500 +HGNC:29810 MPHOSPH8 M-phase phosphoprotein 8 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "mpp8|HSMPP8" Ankyrin repeat domain containing 403 2007-08-24 2014-11-19 54737 ENSG00000196199 OTTHUMG00000016498 uc001umh.4 "AK056785|AJ293409" NM_017520 CCDS9287 Q99549 8885239 MGI:1922589 RGD:1305133 MPHOSPH8 611626 +HGNC:7215 MPHOSPH9 M-phase phosphoprotein 9 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 MPP9 2000-05-12 2016-10-05 10198 ENSG00000051825 OTTHUMG00000168849 uc001uel.5 X98258 XR_001748539 CCDS9243 Q99550 8885239 MGI:2443138 RGD:1598368 MPHOSPH9 605501 +HGNC:7213 MPHOSPH10 M-phase phosphoprotein 10 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "MPP10|MPP10P|CT90|PPP1R106" "protein phosphatase 1, regulatory subunit 106|U3 small nucleolar ribonucleoprotein" M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) Protein phosphatase 1 regulatory subunits 694 2000-05-12 2016-01-12 2016-01-12 10199 ENSG00000124383 OTTHUMG00000129715 uc002sht.3 X98494 NM_005791 CCDS1916 O00566 "8885239|9450966" MGI:1915223 RGD:1307633 MPHOSPH10 605503 +HGNC:7216 MPI mannose phosphate isomerase protein-coding gene gene with protein product Approved 15q24.1 15q24.1 mannose-6-phosphate isomerase 2001-06-22 2015-08-25 4351 ENSG00000178802 OTTHUMG00000142826 uc002azc.3 XM_011521593 "CCDS10272|CCDS73756|CCDS73757|CCDS73758|CCDS81908" P34949 MGI:97075 RGD:3107 Congenital Disorder of Glycosylation pages|http://www.euroglycanet.org/ MPI 154550 123463 5.3.1.8 +HGNC:7217 MPL MPL proto-oncogene, thrombopoietin receptor protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "CD110|TPOR" myeloproliferative leukemia virus oncogene "CD molecules|Fibronectin type III domain containing" "471|555" 1990-09-10 2014-06-26 2016-10-12 4352 ENSG00000117400 OTTHUMG00000007429 uc001ciw.4 M90102 NM_005373 CCDS483 P40238 1608974 MGI:97076 RGD:1311069 LRG_510|http://www.lrg-sequence.org/LRG/LRG_510 MPL 159530 123465 objectId:1722 CD110 +HGNC:16002 MPLKIP M-phase specific PLK1 interacting protein protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "ORF20|TTDN1" C7orf11 chromosome 7 open reading frame 11 2002-02-13 2012-03-01 2012-03-01 2016-10-12 136647 ENSG00000168303 OTTHUMG00000128797 uc003thl.5 AX048113 NM_138701 CCDS5463 Q8TAP9 11829489 MGI:1913558 RGD:1584365 LRG_468|http://www.lrg-sequence.org/LRG/LRG_468 609188 119113 +HGNC:25934 MPND MPN domain containing protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ14981 2007-02-02 2014-11-18 84954 ENSG00000008382 OTTHUMG00000181914 uc002mae.3 NM_032868 "CCDS42470|CCDS54200|CCDS74261" Q8N594 MGI:1915297 RGD:1589335 MPND +HGNC:7218 MPO myeloperoxidase protein-coding gene gene with protein product Approved 17q22 17q22 2001-06-22 2016-10-12 4353 ENSG00000005381 OTTHUMG00000178922 uc002ivu.1 NM_000250 CCDS11604 P05164 MGI:97137 RGD:1592081 "MPObase: Mutation registry for Myeloperoxidase deficiency|http://structure.bmc.lu.se/idbase/MPObase/|LRG_84|http://www.lrg-sequence.org/LRG/LRG_84" MPO 606989 123468 objectId:2789 1.11.1.7 +HGNC:7219 MPP1 membrane palmitoylated protein 1 protein-coding gene gene with protein product Approved Xq28 Xq28 PEMP DXS552E "membrane protein, palmitoylated 1 (55kD)|membrane protein, palmitoylated 1, 55kDa|membrane protein, palmitoylated 1" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 1992-03-24 2016-04-01 2016-04-01 4354 ENSG00000130830 OTTHUMG00000024244 uc004fmp.3 NM_002436 "CCDS14762|CCDS55544|CCDS55545" Q00013 1713685 MGI:105941 RGD:1594331 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MPP1 MPP1 305360 +HGNC:7220 MPP2 membrane palmitoylated protein 2 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 DKFZp761D0712 "MAGUK p55 subfamily member 2|discs large, homolog 2" DLG2 "membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)|membrane protein, palmitoylated 2" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 1995-05-04 2016-04-01 2016-04-01 4355 ENSG00000108852 OTTHUMG00000133840 uc032fjg.2 NM_005374 "CCDS11471|CCDS62206|CCDS62207|CCDS62208|CCDS62209|CCDS62210" Q14168 7590743 MGI:1858257 RGD:620014 MPP2 600723 +HGNC:7221 MPP3 membrane palmitoylated protein 3 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "MAGUK p55 subfamily member 3|discs, large (Drosophila) homolog 3|membrane protein palmitoylated 3" DLG3 "membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)|membrane protein, palmitoylated 3" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 1995-05-04 2016-04-01 2016-10-05 4356 ENSG00000161647 OTTHUMG00000133838 uc002iei.5 NM_001932 "CCDS42344|CCDS82135" Q13368 8824795 MGI:1328354 RGD:620015 MPP3 601114 +HGNC:13680 MPP4 membrane palmitoylated protein 4 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 DLG6 "membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)|membrane protein, palmitoylated 4" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 2000-10-23 2016-04-01 2016-10-05 58538 ENSG00000082126 OTTHUMG00000154525 uc002uyk.5 AF316032 XM_017004620 CCDS46491 Q96JB8 11414766 MGI:2386681 RGD:620016 MPP4 606575 +HGNC:18669 MPP5 membrane palmitoylated protein 5 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "PALS1|FLJ12615" "stardust|protein associated with Lin-7 1" "membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)|membrane protein, palmitoylated 5" "Membrane associated guanylate kinases|PDZ domain containing|Crumbs complex" "904|1220|1223" 2002-05-23 2016-04-01 2016-04-01 64398 ENSG00000072415 OTTHUMG00000171243 uc001xjc.5 AK022677 NM_022474 "CCDS9779|CCDS58325" Q8N3R9 11927608 MGI:1927339 RGD:1308071 MPP5 606958 +HGNC:18167 MPP6 membrane palmitoylated protein 6 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "PALS2|VAM-1|p55T" "membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)|membrane protein, palmitoylated 6" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 2002-05-23 2016-04-01 2016-10-05 51678 ENSG00000105926 OTTHUMG00000023507 uc003swy.4 AF162130 XM_017012315 CCDS5388 Q9NZW5 "10753959|11311936" MGI:1927340 RGD:1311833 MPP6 606959 +HGNC:26542 MPP7 membrane palmitoylated protein 7 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 FLJ32798 "membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)|membrane protein, palmitoylated 7" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 2004-01-15 2016-04-01 2016-04-01 143098 ENSG00000150054 OTTHUMG00000017868 uc001iub.2 BC038105 NM_173496 CCDS7158 Q5T2T1 14719143 MGI:1922989 RGD:1305675 MPP7 610973 +HGNC:15988 MPPE1 metallophosphoesterase 1 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 2003-10-17 2015-08-25 65258 ENSG00000154889 OTTHUMG00000131661 uc002kqf.5 BC002877 NM_023075 "CCDS11853|CCDS56054|CCDS82242" Q53F39 11978971 MGI:2661311 RGD:1309184 MPPE1 611900 +HGNC:20143 MPPE1P1 metallophosphoesterase 1 pseudogene 1 pseudogene pseudogene Approved 14q31.3 14q31.3 MPPE1P metallophosphoesterase 1 pseudogene 2003-11-13 2013-09-20 2013-09-20 2014-11-19 390501 ENSG00000258990 OTTHUMG00000170891 NG_022846 PGOHUM00000247880 +HGNC:1306 MPPED1 metallophosphoesterase domain containing 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "239AB|FAM1A" C22orf1 chromosome 22 open reading frame 1 1998-08-06 2005-10-10 2005-10-10 2015-09-03 758 ENSG00000186732 OTTHUMG00000150566 uc062exv.1 U84894 NM_001044370 CCDS46723 O15442 "9266672|10591208" MGI:106316 RGD:1308244 MPPED1 602112 +HGNC:1180 MPPED2 metallophosphoesterase domain containing 2 protein-coding gene gene with protein product Approved 11p14.1 11p14.1 "239FB|D11S302E|Hs.46638|FAM1B|dJ873F21.1|dJ1024C24.1" C11orf8 chromosome 11 open reading frame 8 1998-08-06 2005-10-10 2005-10-10 2016-10-05 744 ENSG00000066382 OTTHUMG00000166159 uc001msr.4 U57911 NM_001584 "CCDS7870|CCDS44560" Q15777 "8666403|9266672" MGI:1924265 RGD:735060 MPPED2 600911 +HGNC:30321 MPRIP myosin phosphatase Rho interacting protein protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "RHOIP3|M-RIP|p116Rip" Rho interacting protein 3 Pleckstrin homology domain containing 682 2008-06-02 2014-11-19 23164 ENSG00000133030 OTTHUMG00000059276 uc002gqu.3 BC014102 NM_015134 "CCDS32578|CCDS42268" Q6WCQ1 10048485 MGI:1349438 RGD:619947 MPRIP 612935 +HGNC:41263 MPRIP-AS1 MPRIP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 MPRIP antisense RNA 1 (non-protein coding) 2012-03-02 2012-08-15 2014-11-18 100874529 ENSG00000225442 OTTHUMG00000059279 uc060buu.1 BG548937 +HGNC:44594 MPRIPP1 myosin phosphatase Rho interacting protein pseudogene 1 pseudogene pseudogene Approved 3p21.31 03p21.31 2012-11-19 2012-11-19 100421374 ENSG00000214820 OTTHUMG00000156454 NG_025573 PGOHUM00000250236 +HGNC:7223 MPST mercaptopyruvate sulfurtransferase protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "MST|TST2|TUM1" "human liver rhodanese|tRNA thiouridin modification protein 1" 1997-05-22 2016-10-05 4357 ENSG00000128309 OTTHUMG00000150543 uc003aql.5 X59434 NM_001013440 "CCDS13939|CCDS46703" P25325 1953758 MGI:2179733 RGD:620065 MPST 602496 objectId:1446 2.8.1.2 +HGNC:48364 MPTX1 mucosal pentraxin 1 (pseudogene) pseudogene pseudogene Approved 1q23.2 01q23.2 Short pentraxins 1143 2013-05-13 2014-03-12 649458 ENSG00000215846 OTTHUMG00000037179 NG_027744 A8MV57 MGI:1913539 RGD:1590926 PGOHUM00000245032 +HGNC:7224 MPV17 MPV17, mitochondrial inner membrane protein protein-coding gene gene with protein product Approved 2p23.3 02p23.3 SYM1 glomerulosclerosis MpV17 transgene, murine homolog, glomerulosclerosis 1994-03-21 2016-03-15 2016-03-15 4358 ENSG00000115204 OTTHUMG00000097074 uc002rjs.4 NM_002437 CCDS1748 P39210 "8281143|16582910" MGI:97138 RGD:1310512 MPV17 137960 123470 +HGNC:26827 MPV17L MPV17 mitochondrial inner membrane protein like protein-coding gene gene with protein product Approved 16p13.11 16p13.11 "FLJ39599|MLPH1|MLPH2|MPV17L1" 2006-05-12 2016-03-15 2016-03-15 255027 ENSG00000156968 OTTHUMG00000129882 uc002ddn.3 DQ004255 NM_173803 "CCDS10560|CCDS45421" Q2QL34 16631601 MGI:2135951 RGD:2324483 MPV17L +HGNC:28177 MPV17L2 MPV17 mitochondrial inner membrane protein like 2 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FKSG24|MGC12972" 2009-04-06 2016-03-15 2016-03-15 84769 ENSG00000254858 OTTHUMG00000165628 uc002nid.4 AK094091 NM_032683 CCDS42522 Q567V2 24948607 MGI:2681846 RGD:1308064 MPV17L2 616133 +HGNC:7225 MPZ myelin protein zero protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "HMSNIB|CMT2I|CMT2J" "CMT1|CMT1B" Charcot-Marie-Tooth neuropathy 1B V-set domain containing 590 1990-04-27 2008-08-01 2016-10-12 4359 ENSG00000158887 OTTHUMG00000034341 uc001gaf.4 BC006491 NM_000530 CCDS1229 P25189 7693129 MGI:103177 RGD:3109 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_256|http://www.lrg-sequence.org/LRG/LRG_256" MPZ 159440 123473 +HGNC:7226 MPZL1 myelin protein zero like 1 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "PZR|FLJ21047" V-set domain containing 590 1999-06-14 2016-01-19 2016-01-19 9019 ENSG00000197965 OTTHUMG00000034571 uc001geo.3 AF087020 NM_024569 "CCDS1264|CCDS44273|CCDS53425" O95297 9792637 MGI:1915731 RGD:1359140 MPZL1 604376 +HGNC:3496 MPZL2 myelin protein zero like 2 protein-coding gene gene with protein product Approved 11q24 11q24 EVA EVA1 epithelial V-like antigen 1 V-set domain containing 590 1999-11-22 2007-08-01 2016-01-19 2016-01-19 10205 ENSG00000149573 OTTHUMG00000166967 uc001psn.4 AF275945 NM_005797 CCDS8393 O60487 9585423 MGI:1289160 RGD:1307196 MPZL2 604873 +HGNC:27279 MPZL3 myelin protein zero like 3 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 V-set domain containing 590 2007-07-30 2016-01-19 2016-01-19 196264 ENSG00000160588 OTTHUMG00000166966 uc001psm.5 AK095399 NM_198275 "CCDS8392|CCDS66241" Q6UWV2 17273165 MGI:2442647 RGD:1310980 MPZL3 611707 +HGNC:4975 MR1 major histocompatibility complex, class I-related protein-coding gene gene with protein product Approved 1q25.3 01q25.3 HLALS major histocompatibility complex, class I-like sequence "C1-set domain containing|Minor histocompatibility antigens" "591|870" 1995-12-20 2003-03-07 2003-03-05 2014-11-19 3140 ENSG00000153029 OTTHUMG00000035175 uc001goq.2 AF010446 NM_001531 "CCDS1342|CCDS53440|CCDS53441|CCDS53442" Q95460 "7624800|9784382" MGI:1195463 RGD:1593291 MR1 600764 +HGNC:1304 MRAP melanocortin 2 receptor accessory protein protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "B27|FALP" C21orf61 chromosome 21 open reading frame 61 2000-08-22 2005-02-07 2005-02-01 2016-10-05 56246 ENSG00000170262 OTTHUMG00000085309 uc002ypj.4 AF454915 NM_178817 "CCDS13612|CCDS13613" Q8TCY5 "12036298|15654338" MGI:1924287 RGD:1310648 MRAP 609196 123478 +HGNC:21232 MRAP2 melanocortin 2 receptor accessory protein 2 protein-coding gene gene with protein product Approved 6q14.2 06q14.2 bA51G5.2 C6orf117 chromosome 6 open reading frame 117 2003-05-29 2008-07-16 2008-07-16 2016-10-05 112609 ENSG00000135324 OTTHUMG00000015121 uc003pkg.5 AK090775 NM_138409 CCDS5001 Q96G30 MGI:3609239 RGD:1309873 MRAP2 615410 +HGNC:7227 MRAS muscle RAS oncogene homolog protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "M-RAs|R-RAS3|RRAS3" RAS type GTPase family 389 1999-09-29 2015-09-03 22808 ENSG00000158186 OTTHUMG00000159888 uc003esh.5 AF022080 XM_017005887 "CCDS3100|CCDS58855" O14807 "9400994|10446149" MGI:1100856 RGD:3111 MRAS 608435 +HGNC:7228 MRC1 mannose receptor, C type 1 protein-coding gene gene with protein product Approved 10p12.33 10p12.33 "CLEC13D|CD206|bA541I19.1|CLEC13DL" MRC1L1 mannose receptor, C type 1-like 1 "CD molecules|C-type lectin domain family|Scavenger receptors" "471|494|1253" 1992-07-30 2016-10-05 4360 ENSG00000260314 OTTHUMG00000174646 uc031ptj.2 J05550 NM_002438 CCDS7123 P22897 1294118 MGI:97142 RGD:1309353 MRC1 153618 CD206 +HGNC:16875 MRC2 mannose receptor C type 2 protein-coding gene gene with protein product Approved 17q23 17q23 "KIAA0709|ENDO180|CLEC13E|CD280" "C-type lectin domain family 13 member E|endocytic receptor 180" mannose receptor, C type 2 "CD molecules|C-type lectin domain family" "471|494" 2002-09-24 2016-04-01 2016-04-01 9902 ENSG00000011028 OTTHUMG00000179178 uc002jad.5 AB014609 XM_011525543 CCDS11634 Q9UBG0 "9734811|8702911" MGI:107818 RGD:1559436 MRC2 612264 CD280 +HGNC:7230 MRE11 MRE11 homolog, double strand break repair nuclease protein-coding gene gene with protein product Approved 11q21 11q21 ATLD AT-like disease MRE11A "MRE11 meiotic recombination 11 homolog A (S. cerevisiae)|MRE11 homolog A, double strand break repair nuclease" "BRCA1 C complex|MRN complex" "1336|1344" 1995-05-05 2016-09-30 2016-09-30 2016-10-12 4361 ENSG00000020922 OTTHUMG00000167780 uc001peu.4 BC063458 NM_005591 "CCDS8298|CCDS8299|CCDS81617" P49959 "8530104|24316220" MGI:1100512 RGD:69263 "MRE11Abase: Mutation registry for Ataxia-telangiectasia-like disorder (ATLD)|http://structure.bmc.lu.se/idbase/MRE11Abase/|LRG_85|http://www.lrg-sequence.org/LRG/LRG_85" 600814 123483 +HGNC:7231 MRE11P1 MRE11 homolog, double strand break repair nuclease pseudogene 1 pseudogene pseudogene Approved 3q25.31 03q25.31 MRE11B "meiotic recombination (S. cerevisiae) 11 homolog B|MRE11 meiotic recombination 11 homolog B (S. cerevisiae)|MRE11 double strand break repair nuclease B (pseudogene)|MRE11 homolog B, double strand break repair nuclease (pseudogene)" 1997-10-10 2016-09-30 2016-09-30 2016-10-05 4362 ENSG00000242537 OTTHUMG00000158550 AF307006 NG_001157 11371508 PGOHUM00000299239 +HGNC:25478 MREG melanoregulin protein-coding gene gene with protein product Approved 2q35 02q35 "FLJ10116|DSU|WDT2" 2006-11-10 2014-11-18 55686 ENSG00000118242 OTTHUMG00000154828 uc061sdy.1 AK000978 NM_018000 CCDS46513 Q8N565 "19240024|22275436" MGI:2151839 RGD:1562333 MREG 609207 +HGNC:50749 MREGP1 melanoregulin pseudogene 1 pseudogene pseudogene Approved 12p11.21 12p11.21 2014-06-13 2014-06-13 106480304 ENSG00000270395 OTTHUMG00000184737 NG_044292 PGOHUM00000239393 +HGNC:24549 MRFAP1 Morf4 family associated protein 1 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "PAM14|PGR1" 2005-03-07 2011-01-27 2014-11-19 93621 ENSG00000179010 OTTHUMG00000125504 uc003gjg.3 AF116272 NM_033296 CCDS3389 Q9Y605 15367658 MGI:1914818 RGD:628631 MRFAP1 616905 +HGNC:28796 MRFAP1L1 Morf4 family associated protein 1 like 1 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 MGC9651 2005-03-07 2016-02-29 2016-02-29 114932 ENSG00000178988 OTTHUMG00000125507 uc003gjo.5 AF258591 NM_152301 CCDS3392 Q96HT8 12477932 MRFAP1L1 +HGNC:15866 MRGBP MRG domain binding protein protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FLJ10914|MRG15BP|Eaf7" C20orf20 "chromosome 20 open reading frame 20|MRG/MORF4L binding protein" 2001-06-21 2012-10-29 2016-10-03 2016-10-03 55257 ENSG00000101189 OTTHUMG00000032940 uc002ydi.4 AK001776 NM_018270 CCDS13503 Q9NV56 12963728 MGI:1920497 RGD:1308612 611157 +HGNC:29626 MRGPRD MAS related GPR family member D protein-coding gene gene with protein product Approved 11q13.3 11q13.3 mrgD MAS-related GPR, member D G protein-coupled receptors, Class A orphans 262 2004-03-25 2015-11-23 2015-11-23 116512 ENSG00000172938 OTTHUMG00000167896 uc010rqf.2 AB083627 NM_198923 CCDS31625 Q8TDS7 "11551509|12909716" MGI:3033142 RGD:738040 MRGPRD 607231 objectId:152 +HGNC:30694 MRGPRE MAS related GPR family member E protein-coding gene gene with protein product Approved 11p15.4 11p15.4 mrgE GPR167 "G protein-coupled receptor 167|MAS-related GPR, member E" G protein-coupled receptors, Class A orphans 262 2004-03-25 2015-11-23 2016-10-05 116534 ENSG00000184350 OTTHUMG00000011708 uc001lxq.6 AY255572 XM_171536 CCDS41603 Q86SM8 11551509 MGI:2441884 RGD:738045 MRGPRE 607232 objectId:153 +HGNC:24828 MRGPRF MAS related GPR family member F protein-coding gene gene with protein product Approved 11q13.3 11q13.3 "MGC21621|mrgF" "GPR168|GPR140" "G protein-coupled receptor 168|G protein-coupled receptor 140|MAS-related GPR, member F" G protein-coupled receptors, Class A orphans 262 2004-03-25 2015-11-23 2016-10-05 116535 ENSG00000172935 OTTHUMG00000167897 uc001oop.5 AK075492 NM_145015 CCDS8188 Q96AM1 12477932 MGI:2384823 RGD:708478 MRGPRF 607233 objectId:154 +HGNC:51140 MRGPRF-AS1 MRGPRF antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q13.3 11q13.3 2014-07-30 2014-07-30 101928200 ENSG00000256508 OTTHUMG00000172940 NR_120541 +HGNC:24829 MRGPRG MAS related GPR family member G protein-coding gene gene with protein product Approved 11p15.4 11p15.4 mrgG GPR169 "G protein-coupled receptor 169|MAS-related GPR, member G" G protein-coupled receptors, Class A orphans 262 2004-03-25 2015-11-23 2015-11-23 386746 ENSG00000182170 OTTHUMG00000011709 uc001lxp.2 AY255583 NM_001164377 CCDS44520 Q86SM5 12679517 MGI:3033145 RGD:738044 MRGPRG 607234 objectId:155 +HGNC:26691 MRGPRG-AS1 MRGPRG antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 "FLJ36102|HSD-40" C11orf36 "chromosome 11 open reading frame 36|MRGPRG antisense RNA 1 (non-protein coding)" 2005-05-13 2012-08-10 2012-08-15 2014-11-18 283303 ENSG00000236301 OTTHUMG00000011707 uc057ybd.1 AK097749 NR_027138 Q2M3A8 +HGNC:17962 MRGPRX1 MAS related GPR family member X1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 MRGX1 MAS-related GPR, member X1 G protein-coupled receptors, Class A orphans 262 2005-05-09 2015-11-23 2015-11-23 259249 ENSG00000170255 OTTHUMG00000162655 uc001mpg.3 NM_147199 CCDS7846 Q96LB2 11551509 MGI:2441674 MRGPRX1 607227 objectId:156 +HGNC:17983 MRGPRX2 MAS related GPR family member X2 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 MRGX2 MAS-related GPR, member X2 G protein-coupled receptors, Class A orphans 262 2005-05-09 2015-11-23 2015-11-23 117194 ENSG00000183695 OTTHUMG00000166098 uc001mph.4 NM_054030 CCDS7847 Q96LB1 11551509 "MGI:3033115|MGI:3588270" RGD:738048 MRGPRX2 607228 objectId:157 +HGNC:17980 MRGPRX3 MAS related GPR family member X3 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 MRGX3 MAS-related GPR, member X3 G protein-coupled receptors, Class A orphans 262 2005-05-09 2015-11-23 2015-11-23 117195 ENSG00000179826 OTTHUMG00000166435 uc001mnu.3 NM_054031 CCDS7830 Q96LB0 11551509 "MGI:3033095|MGI:3033098|MGI:3033148|MGI:3821888" RGD:632282 MRGPRX3 607229 objectId:158 +HGNC:17617 MRGPRX4 MAS related GPR family member X4 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 MRGX4 MAS-related GPR, member X4 G protein-coupled receptors, Class A orphans 262 2005-05-09 2015-11-23 2015-11-23 117196 ENSG00000179817 OTTHUMG00000166442 uc001mnv.1 AY042216 NM_054032 CCDS7831 Q96LA9 11551509 MGI:3033139 RGD:632284 MRGPRX4 607230 objectId:159 +HGNC:28469 MRI1 methylthioribose-1-phosphate isomerase 1 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "MGC3207|Ypr118w|mtnA|MRDI" "mediator of RhoA-dependent invasion|S-methyl-5-thioribose-1-phosphate isomerase 1" methylthioribose-1-phosphate isomerase homolog (S. cerevisiae) 2009-01-15 2013-05-29 2014-11-19 84245 ENSG00000037757 OTTHUMG00000180867 uc002mxe.4 NM_032285 "CCDS12297|CCDS32923" Q9BV20 "15215245|19620624|23124037" MGI:1915123 RGD:1307789 MRI1 615105 5.3.1.23 +HGNC:48649 MRLN myoregulin protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "M1|MUSER1|MLN" "muscle specific 1|muscle enriched RNA 1" LINC00948 long intergenic non-protein coding RNA 948 2013-06-03 2015-02-10 2015-02-10 2015-02-10 100507027 ENSG00000227877 OTTHUMG00000018282 "AB019391|BG210823" NR_038199 CCDS81467 P0DMT0 25640239 MGI:1916813 RGD:6490783 616246 +HGNC:26202 MRM1 mitochondrial rRNA methyltransferase 1 protein-coding gene gene with protein product Approved 17q12 17q12 FLJ22578 mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) SPOUT methyltranferase domain containing 1294 2005-12-13 2015-07-01 2015-09-03 79922 ENSG00000278619 OTTHUMG00000188443 uc032ggy.3 AK026231 NM_024864 CCDS32631 Q6IN84 24036117 MGI:2443470 RGD:1566232 MRM1 +HGNC:16352 MRM2 mitochondrial rRNA methyltransferase 2 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "FJH1|RRMJ2" "rRNA (uridine-2'-O-)-methyltransferase|MRM2 RNA methyltransferase homolog (S. cerevisiae)" FTSJ2 FtsJ RNA methyltransferase homolog 2 (E. coli) 2001-11-09 2016-04-12 2016-04-12 2016-10-05 29960 ENSG00000122687 OTTHUMG00000023866 uc003slm.3 AF093415 NM_013393 CCDS5328 Q9UI43 "11827451|25009282" MGI:1915267 RGD:1305944 606906 2.1.1.- +HGNC:18485 MRM3 mitochondrial rRNA methyltransferase 3 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "FLJ10581|HC90|RMTL1" RNMTL1 RNA methyltransferase like 1 SPOUT methyltranferase domain containing 1294 2002-04-26 2016-04-12 2016-04-12 2016-05-11 55178 ENSG00000171861 OTTHUMG00000090285 uc002frw.4 AF177344 NM_018146 CCDS10997 Q9HC36 "12296377|25009282" MGI:1914640 RGD:1309077 612600 2.1.1.- +HGNC:30817 MRNIP MRN complex interacting protein protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "MGC65027|MGC78537|DKFZp686L2452|LOC51149" "truncated calcium binding protein|MRN-interacting protein" C5orf45 chromosome 5 open reading frame 45 2008-07-02 2016-09-30 2016-09-30 2016-09-30 51149 ENSG00000161010 OTTHUMG00000163490 uc003mla.4 NM_016175 "CCDS34318|CCDS34319" Q6NTE8 27568553 MGI:1915317 RGD:1564036 +HGNC:24121 MRO maestro protein-coding gene gene with protein product Approved 18q21.2 18q21.2 "B29|FLJ30140" "B29 protein|beside the Ma29 deletion" C18orf3 chromosome 18 open reading frame 3 Maestro heat like repeat containing 636 2004-04-26 2004-06-15 2016-10-05 83876 ENSG00000134042 OTTHUMG00000132692 uc002lex.4 AK054702 NM_031939 "CCDS11947|CCDS45867|CCDS45868|CCDS45869" Q9BYG7 11401430 MGI:2152817 RGD:1559803 MRO 608080 +HGNC:26958 MROH1 maestro heat like repeat family member 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 KIAA1833 HEATR7A "HEAT repeat containing 7A|maestro heat-like repeat family member 1" Maestro heat like repeat containing 636 2008-11-21 2012-12-19 2016-01-22 2016-01-22 727957 ENSG00000179832 OTTHUMG00000165781 uc064rjm.1 NM_032450 "CCDS47938|CCDS47939|CCDS75803" Q8NDA8 11347906 MGI:2442558 RGD:1642414 +HGNC:27936 MROH2A maestro heat like repeat family member 2A protein-coding gene gene with protein product Approved 2q37.1 02q37.1 HEATR7B1 "HEAT repeat containing 7B1|maestro heat-like repeat family member 2A" Maestro heat like repeat containing 636 2008-11-21 2012-12-19 2016-01-22 2016-01-22 339766 ENSG00000185038 OTTHUMG00000059037 uc002vvc.2 XM_291007 CCDS74674 A6NES4 12477932 MGI:3705228 RGD:1565687 +HGNC:26857 MROH2B maestro heat like repeat family member 2B protein-coding gene gene with protein product Approved 5p13.1 05p13.1 "DKFZp781F0822|FLJ40243" HEATR7B2 "HEAT repeat family member 7B2|maestro heat-like repeat family member 2B" Maestro heat like repeat containing 636 2008-11-21 2012-12-19 2016-01-22 2016-01-22 133558 ENSG00000171495 OTTHUMG00000162151 uc003jmj.5 NM_173489 CCDS47202 Q7Z745 12477932 MGI:1921905 RGD:1305413 +HGNC:33122 MROH3P maestro heat like repeat family member 3, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 C1orf81 "chromosome 1 open reading frame 81|maestro heat-like repeat family member 3, pseudogene" Maestro heat like repeat containing 636 2006-09-08 2012-12-19 2016-01-22 2016-01-22 647215 ENSG00000233217 OTTHUMG00000035782 DQ983818 XR_041455 MGI:1923672 +HGNC:44902 MROH4P maestro heat like repeat family member 4, pseudogene pseudogene pseudogene Approved 8q24.3 08q24.3 maestro heat-like repeat family member 4, pseudogene Maestro heat like repeat containing 636 2012-12-15 2016-01-22 2016-01-22 101154686 ENSG00000232722 OTTHUMG00000154595 NG_033034 MGI:1916689 +HGNC:42976 MROH5 maestro heat like repeat family member 5 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FLJ43860 maestro heat-like repeat family member 5 Maestro heat like repeat containing 636 2012-12-16 2016-01-22 2016-01-22 389690 ENSG00000226807 OTTHUMG00000155944 uc064qua.1 NM_207414 Q6ZUA9 MGI:2685474 RGD:1559695 +HGNC:27814 MROH6 maestro heat like repeat family member 6 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 C8orf73 "chromosome 8 open reading frame 73|maestro heat-like repeat family member 6" Maestro heat like repeat containing 636 2005-09-23 2012-12-19 2016-01-22 2016-01-22 642475 ENSG00000204839 OTTHUMG00000165164 uc010mff.4 AF289596 NM_001100878 CCDS47928 A6NGR9 12477932 MGI:5011755 RGD:2323632 +HGNC:24802 MROH7 maestro heat like repeat family member 7 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 FLJ46354 "C1orf175|HEATR8" "chromosome 1 open reading frame 175|HEAT repeat containing 8|maestro heat-like repeat family member 7" Maestro heat like repeat containing 636 2005-07-21 2012-12-19 2016-01-22 2016-01-22 374977 ENSG00000184313 OTTHUMG00000009890 uc010ooe.2 AL832492 NM_198547 CCDS41342 Q68CQ1 12477932 MGI:2685873 RGD:1563440 +HGNC:49180 MROH7-TTC4 MROH7-TTC4 readthrough (NMD candidate) other readthrough Approved 1p32.3 01p32.3 2013-09-25 2013-09-25 100527960 ENSG00000271723 OTTHUMG00000185328 NR_037641 +HGNC:16125 MROH8 maestro heat like repeat family member 8 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "dJ621N11.4|dJ621N11.3" hypothetical protein LOC140699 "C20orf131|C20orf132" "chromosome 20 open reading frame 131|chromosome 20 open reading frame 132|maestro heat-like repeat family member 8" Maestro heat like repeat containing 636 2001-07-17 2012-12-19 2016-01-22 2016-10-05 140699 ENSG00000101353 OTTHUMG00000032407 uc061wut.1 AL136172 NM_152503 Q9H579 "11780052|15635413" MGI:3603828 RGD:2321481 +HGNC:26287 MROH9 maestro heat like repeat family member 9 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 "FLJ23550|ARMC11" C1orf129 "chromosome 1 open reading frame 129|maestro heat-like repeat family member 9" Maestro heat like repeat containing 636 2005-06-29 2012-12-19 2016-01-22 2016-01-22 80133 ENSG00000117501 OTTHUMG00000041456 uc001ghg.4 AK027203 NM_025063 "CCDS41436|CCDS53429" Q5TGP6 MGI:1925508 RGD:1564745 +HGNC:14595 MROS Melkersson-Rosenthal syndrome phenotype phenotype only Approved 9p11 09p11 MRS 2001-02-09 2001-02-09 8011 7923865 155900 +HGNC:14275 MRPL1 mitochondrial ribosomal protein L1 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 BM022 Mitochondrial ribosomal proteins 646 2001-02-28 2015-08-25 65008 ENSG00000169288 OTTHUMG00000130200 uc003hku.3 AB049474 NM_020236 CCDS3583 Q9BYD6 MGI:2137202 RGD:1306850 MRPL1 611821 +HGNC:14056 MRPL2 mitochondrial ribosomal protein L2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "MRP-L14|RPML14|CGI-22" Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 51069 ENSG00000112651 OTTHUMG00000014719 uc003ots.2 AB051617 XM_005249161 "CCDS34454|CCDS75458" Q5T653 MGI:1351622 RGD:1307147 MRPL2 611822 +HGNC:29698 MRPL2P1 mitochondrial ribosomal protein L2 pseudogene 1 pseudogene pseudogene Approved 12q21.33 12q21.33 2004-10-14 2012-11-14 347894 ENSG00000257480 OTTHUMG00000169948 AY135252 NG_002838 12706105 PGOHUM00000239886 +HGNC:10379 MRPL3 mitochondrial ribosomal protein L3 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 MRL3 RPML3 Mitochondrial ribosomal proteins 646 1999-09-16 2016-10-05 11222 ENSG00000114686 OTTHUMG00000159607 uc003eoh.4 X06323 NM_007208 CCDS3071 P09001 2891103 MGI:2137204 RGD:1306391 MRPL3 607118 325132 +HGNC:29701 MRPL3P1 mitochondrial ribosomal protein L3 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 2010-09-29 2010-09-29 359739 ENSG00000215349 OTTHUMG00000016485 NG_002855 12706105 PGOHUM00000248307 +HGNC:14276 MRPL4 mitochondrial ribosomal protein L4 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 CGI-28 Mitochondrial ribosomal proteins 646 2001-02-28 2015-08-25 51073 ENSG00000105364 OTTHUMG00000180400 uc060tfq.1 AB049635 XM_011528045 "CCDS12230|CCDS42499" Q9BYD3 MGI:2137210 RGD:1311777 MRPL4 611823 +HGNC:14277 MRPL9 mitochondrial ribosomal protein L9 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 65005 ENSG00000143436 OTTHUMG00000013063 uc001eyv.4 AK026363 NM_031420 "CCDS1003|CCDS72916" Q9BYD2 MGI:2137211 RGD:1359171 MRPL9 611824 +HGNC:29726 MRPL9P1 mitochondrial ribosomal protein L9 pseudogene 1 pseudogene pseudogene Approved 8q21.11 08q21.11 2004-09-22 2004-09-22 137290 ENSG00000254305 OTTHUMG00000164556 NG_001539 12706105 +HGNC:14055 MRPL10 mitochondrial ribosomal protein L10 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "RPML8|MRP-L8|L10MT|MRP-L10|MRPL8|MGC17973" 39S ribosomal protein L10, mitochondrial Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 124995 ENSG00000159111 OTTHUMG00000156302 uc002ilz.4 AB051618 NM_145255 "CCDS11516|CCDS11517" Q7Z7H8 11551941 MGI:1333801 RGD:1588626 MRPL10 611825 +HGNC:14042 MRPL11 mitochondrial ribosomal protein L11 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 Mitochondrial ribosomal proteins 646 2001-02-28 2014-11-19 65003 ENSG00000174547 OTTHUMG00000167097 uc001ohz.5 AB051338 NM_016050 "CCDS8139|CCDS8140|CCDS44655" Q9Y3B7 MGI:2137215 RGD:1359665 MRPL11 611826 +HGNC:29694 MRPL11P2 mitochondrial ribosomal protein L11 pseudogene 2 pseudogene pseudogene Approved 5q31.3 05q31.3 2005-06-28 2005-08-09 134008 AY135247 NG_002416 12706105 +HGNC:29695 MRPL11P3 mitochondrial ribosomal protein L11 pseudogene 3 pseudogene pseudogene Approved 12q21.2 12q21.2 2004-10-14 2004-10-14 359734 AY135248 NG_002850 12706105 +HGNC:10378 MRPL12 mitochondrial ribosomal protein L12 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "MRPL7/L12|MRPL7" RPML12 Mitochondrial ribosomal proteins 646 1997-02-14 2016-10-05 6182 ENSG00000262814 OTTHUMG00000178171 uc002kbh.3 X79865 NM_002949 CCDS11785 P52815 "8626705|9169145" MGI:1926273 RGD:1588559 MRPL12 602375 +HGNC:14278 MRPL13 mitochondrial ribosomal protein L13 protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "L13|RPL13|L13mt|RPML13|L13A" Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 28998 ENSG00000172172 OTTHUMG00000165039 uc003ypa.4 AB049640 NM_014078 CCDS6332 Q9BYD1 11543634 MGI:2137218 RGD:1359587 MRPL13 610200 +HGNC:14279 MRPL14 mitochondrial ribosomal protein L14 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "RPML32|MRP-L32" Mitochondrial ribosomal proteins 646 2001-01-18 2016-10-05 64928 ENSG00000180992 OTTHUMG00000014756 uc003owp.4 AB051339 NM_032111 CCDS34460 Q6P1L8 MGI:1333864 RGD:1306240 MRPL14 611827 +HGNC:29696 MRPL14P1 mitochondrial ribosomal protein L14 pseudogene 1 pseudogene pseudogene Approved 17p13.3 17p13.3 2004-09-22 2004-09-22 359735 AY135249 NG_002851 12706105 +HGNC:14054 MRPL15 mitochondrial ribosomal protein L15 protein-coding gene gene with protein product Approved 8q11.23 08q11.23 "RPML7|MRP-L7|HSPC145|L15mt|MRP-L15" Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 29088 ENSG00000137547 OTTHUMG00000164315 uc003xsa.3 AB051619 NM_014175 CCDS6158 Q9P015 11543634 MGI:1351639 RGD:1304796 MRPL15 611828 +HGNC:29697 MRPL15P1 mitochondrial ribosomal protein L15 pseudogene 1 pseudogene pseudogene Approved 15q26.1 15q26.1 2004-09-22 2006-07-07 359736 ENSG00000259441 OTTHUMG00000172017 AY135250 NG_002852 12706105 +HGNC:14476 MRPL16 mitochondrial ribosomal protein L16 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "FLJ20484|PNAS-111" Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-19 54948 ENSG00000166902 OTTHUMG00000167410 uc001noh.2 AF183428 NM_017840 CCDS7976 Q9NX20 MGI:2137219 RGD:735195 MRPL16 611829 +HGNC:14053 MRPL17 mitochondrial ribosomal protein L17 protein-coding gene gene with protein product Approved 11p15.5-p15.4 11p15.5-p15.4 "RPML26|MRP-L26" Mitochondrial ribosomal proteins 646 2001-02-28 2014-11-19 63875 ENSG00000158042 OTTHUMG00000165505 uc001men.3 AB051620 NM_022061 CCDS31412 Q9NRX2 MGI:1351608 RGD:70943 MRPL17 611830 +HGNC:14477 MRPL18 mitochondrial ribosomal protein L18 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 HSPC071 Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-19 29074 ENSG00000112110 OTTHUMG00000015942 uc003qsw.5 AF161556 NM_001318817 CCDS5270 Q9H0U6 "11042152|11551941" MGI:1914931 RGD:1306387 MRPL18 611831 +HGNC:14052 MRPL19 mitochondrial ribosomal protein L19 protein-coding gene gene with protein product Approved 2p12 02p12 "MRP-L15|RPML15|KIAA0104|RLX1" 39S ribosomal protein L19 Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 9801 ENSG00000115364 OTTHUMG00000129990 uc061law.1 AB051621 NM_014763 CCDS1960 P49406 "11543634|17309879" MGI:1926274 RGD:1587381 MRPL19 611832 +HGNC:14478 MRPL20 mitochondrial ribosomal protein L20 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ10024 Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 55052 ENSG00000242485 OTTHUMG00000002916 uc001afo.5 AB049644 NM_017971 CCDS26 Q9BYC9 MGI:2137221 RGD:1588219 MRPL20 611833 +HGNC:29699 MRPL20P1 mitochondrial ribosomal protein L20 pseudogene 1 pseudogene pseudogene Approved 21q22.13 21q22.13 2008-06-05 2008-06-05 2014-02-12 359737 ENSG00000215734 OTTHUMG00000086645 NG_002853 12706105 PGOHUM00000239173 +HGNC:14479 MRPL21 mitochondrial ribosomal protein L21 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-19 219927 ENSG00000197345 OTTHUMG00000167893 uc001ooi.4 AK096756 NM_181512 "CCDS8186|CCDS44662" Q7Z2W9 11551941 MGI:2660674 RGD:1310203 MRPL21 611834 +HGNC:14480 MRPL22 mitochondrial ribosomal protein L22 protein-coding gene gene with protein product Approved 5q33.2 05q33.2 "MRP-L25|RPML25|HSPC158" Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-19 29093 ENSG00000082515 OTTHUMG00000130190 uc003lvy.5 AB051622 NM_014180 "CCDS4331|CCDS43391" Q9NWU5 MGI:1333794 RGD:1309277 MRPL22 611835 +HGNC:29700 MRPL22P1 mitochondrial ribosomal protein L22 pseudogene 1 pseudogene pseudogene Approved 4q12 04q12 2010-09-29 2010-09-29 359738 ENSG00000250324 OTTHUMG00000160812 NG_002854 12706105 PGOHUM00000245538 +HGNC:10322 MRPL23 mitochondrial ribosomal protein L23 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 L23MRP RPL23L Mitochondrial ribosomal proteins 646 1996-05-15 2015-08-25 6150 ENSG00000214026 OTTHUMG00000012476 uc001lux.4 AB051340 NM_021134 CCDS31336 Q16540 8541832 MGI:1196612 RGD:68343 MRPL23 600789 +HGNC:42812 MRPL23-AS1 MRPL23 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 MRPL23 antisense RNA 1 (non-protein coding) 2011-08-18 2012-08-15 2012-10-12 100133545 ENSG00000226416 OTTHUMG00000012474 uc010qxh.3 NR_024471 +HGNC:14037 MRPL24 mitochondrial ribosomal protein L24 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 MRP-L18 Mitochondrial ribosomal proteins 646 2001-02-28 2014-11-19 79590 ENSG00000143314 OTTHUMG00000041296 uc001fpw.2 AB051341 NM_145729 CCDS1155 Q96A35 MGI:1914957 RGD:1359289 MRPL24 611836 +HGNC:14483 MRPL27 mitochondrial ribosomal protein L27 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 51264 ENSG00000108826 OTTHUMG00000162062 uc002iqq.4 AB049647 NM_016504 CCDS11564 Q9P0M9 MGI:2137224 RGD:1309090 MRPL27 611837 +HGNC:14484 MRPL28 mitochondrial ribosomal protein L28 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 p15 MAAT1 melanoma-associated antigen recognised by cytotoxic T lymphocytes Mitochondrial ribosomal proteins 646 2001-01-26 2002-11-13 2016-10-05 10573 ENSG00000086504 OTTHUMG00000047994 uc002cgs.3 U19796 XM_011522351 CCDS32349 Q13084 "11551941|19753307" MGI:1915861 RGD:1583741 MRPL28 604853 +HGNC:14036 MRPL30 mitochondrial ribosomal protein L30 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "MRP-L28|RPML28" Mitochondrial ribosomal proteins 646 2001-02-28 2014-11-19 51263 ENSG00000185414 OTTHUMG00000130642 uc002szv.4 AB051342 NM_145212 CCDS2041 Q8TCC3 MGI:1333820 RGD:9097879 MRPL30 611838 +HGNC:29702 MRPL30P1 mitochondrial ribosomal protein L30 pseudogene 1 pseudogene pseudogene Approved 6p12.1 06p12.1 2010-09-29 2010-09-29 359740 ENSG00000276576 OTTHUMG00000187630 NG_002856 12706105 PGOHUM00000243650 +HGNC:29703 MRPL30P2 mitochondrial ribosomal protein L30 pseudogene 2 pseudogene pseudogene Approved 12p11.21 12p11.21 2010-09-29 2010-09-29 359817 NG_002912 12706105 PGOHUM00000239725 +HGNC:14035 MRPL32 mitochondrial ribosomal protein L32 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "HSPC283|L32mt|MRP-L32|bMRP-59b" Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 64983 ENSG00000106591 OTTHUMG00000155180 uc003tia.4 AB051343 NM_031903 CCDS5468 Q9BYC8 11543634 MGI:2137226 RGD:1310541 MRPL32 611839 +HGNC:29704 MRPL32P1 mitochondrial ribosomal protein L32 pseudogene 1 pseudogene pseudogene Approved Xp11.23 Xp11.23 2010-09-29 2010-09-29 359741 ENSG00000220125 OTTHUMG00000048056 NG_002857 12706105 PGOHUM00000241288 +HGNC:14487 MRPL33 mitochondrial ribosomal protein L33 protein-coding gene gene with protein product Approved 2p23.2 02p23.2 RPL33L C2orf1 Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 9553 ENSG00000243147 OTTHUMG00000097795 uc002rlm.1 AB051623 NM_004891 "CCDS1761|CCDS33167" O75394 MGI:2137225 RGD:2322809 MRPL33 610059 +HGNC:14488 MRPL34 mitochondrial ribosomal protein L34 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 "L34mt|MGC2633|MGC24974" Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-19 64981 ENSG00000130312 OTTHUMG00000182764 uc060vgo.1 AB049652 NM_023937 CCDS12356 Q9BQ48 11543634 MGI:2137227 RGD:1359397 MRPL34 611840 +HGNC:14489 MRPL35 mitochondrial ribosomal protein L35 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-19 51318 ENSG00000132313 OTTHUMG00000037385 uc002srg.5 AF208849 NM_016622 "CCDS1987|CCDS1988" Q9NZE8 "11042152|11551941" MGI:1913473 RGD:1307065 MRPL35 611841 +HGNC:29705 MRPL35P1 mitochondrial ribosomal protein L35 pseudogene 1 pseudogene pseudogene Approved 6p23 06p23 2010-09-29 2010-09-29 359742 ENSG00000220868 OTTHUMG00000014281 NG_002858 12706105 PGOHUM00000243490 +HGNC:29706 MRPL35P2 mitochondrial ribosomal protein L35 pseudogene 2 pseudogene pseudogene Approved 10q21.3 10q21.3 2010-09-29 2010-09-29 359743 ENSG00000232075 OTTHUMG00000018319 NG_002859 12706105 PGOHUM00000238501 +HGNC:23731 MRPL35P3 mitochondrial ribosomal protein L35 pseudogene 3 pseudogene pseudogene Approved 10q22.2 10q22.2 2003-12-04 2014-02-12 359744 ENSG00000226253 OTTHUMG00000018504 AY135263 NG_002860 PGOHUM00000238844 +HGNC:29707 MRPL35P4 mitochondrial ribosomal protein L35 pseudogene 4 pseudogene pseudogene Approved Xp22.2 Xp22.2 2010-09-29 2010-09-29 359745 ENSG00000230691 OTTHUMG00000021141 NG_002861 12706105 PGOHUM00000241191 +HGNC:14490 MRPL36 mitochondrial ribosomal protein L36 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "BRIP1|RPMJ|L36mt|PRPL36|MRP-L36" "putative BRCA1-interacting protein|39S ribosomal protein L36, mitochondrial" Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 64979 ENSG00000171421 OTTHUMG00000090373 uc063cad.1 AB049654 NM_032479 CCDS3865 Q9P0J6 11543634 MGI:2137228 RGD:1306375 MRPL36 611842 +HGNC:29708 MRPL36P1 mitochondrial ribosomal protein L36 pseudogene 1 pseudogene pseudogene Approved 2p13.2 02p13.2 2004-10-11 2004-10-11 285003 AY135265 NG_002831 12706105 +HGNC:14034 MRPL37 mitochondrial ribosomal protein L37 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "RPML2|MRP-L2" Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 51253 ENSG00000116221 OTTHUMG00000008118 uc001cxa.4 AB051344 NM_016491 "CCDS589|CCDS81331" Q9BZE1 10600119 MGI:1926268 RGD:619820 MRPL37 611843 +HGNC:31003 MRPL37P1 mitochondrial ribosomal protein L37 pseudogene 1 pseudogene pseudogene Approved 18q21.32 18q21.32 HsT4307 2004-01-06 2016-10-05 100420950 ENSG00000266946 OTTHUMG00000180008 NG_026336 PGOHUM00000235073 +HGNC:14033 MRPL38 mitochondrial ribosomal protein L38 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "RPML3|MRP-L3|HSPC262|MGC4810" Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 64978 ENSG00000204316 OTTHUMG00000152977 uc010wso.2 AB051345 NM_032478 CCDS11733 Q96DV4 11543634 MGI:1926269 RGD:1311180 MRPL38 611844 +HGNC:14027 MRPL39 mitochondrial ribosomal protein L39 protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "RPML5|MRP-L5|MGC104174|PRED66|PRED22|C21orf92|L39mt|MSTP003|MGC3400|FLJ20451" Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 54148 ENSG00000154719 OTTHUMG00000078371 uc002ylo.4 AB051346 NM_017446 "CCDS13573|CCDS33522" Q9NYK5 11543634 MGI:1351620 RGD:1591507 MRPL39 611845 +HGNC:14491 MRPL40 mitochondrial ribosomal protein L40 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 MRP-L22 NLVCF nuclear localization signal deleted in velocardiofacial syndrome Mitochondrial ribosomal proteins 646 2001-01-26 2002-11-13 2016-10-05 64976 ENSG00000185608 OTTHUMG00000150136 uc002zpg.4 AB051624 NM_003776 CCDS13760 Q9NQ50 "9790763|11543634" MGI:1332635 RGD:1565444 MRPL40 605089 +HGNC:44532 MRPL40P1 mitochondrial ribosomal protein L40 pseudogene 1 pseudogene pseudogene Approved 12q15 12q15 2012-11-14 2012-11-14 645328 ENSG00000256037 OTTHUMG00000169066 NG_021723 PGOHUM00000239837 +HGNC:14492 MRPL41 mitochondrial ribosomal protein L41 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "MRP-L27|RPML27|BMRP|PIG3|MRPL27" Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-19 64975 ENSG00000182154 OTTHUMG00000020987 uc004cnh.5 AB051625 NM_032477 CCDS7046 Q8IXM3 11543634 MGI:1333816 RGD:1310241 MRPL41 611846 +HGNC:14493 MRPL42 mitochondrial ribosomal protein L42 protein-coding gene gene with protein product Approved 12q22 12q22 "MRPS32|MRP-L31|RPML31|PTD007|HSPC204|MRPL31" mitochondrial ribosomal protein S32 Mitochondrial ribosomal proteins 646 2001-01-26 2015-03-03 28977 ENSG00000198015 OTTHUMG00000170157 uc001tcs.4 AB051626 NM_014050 CCDS9045 Q9Y6G3 "11279123|11042152" MGI:1333774 RGD:1304915 MRPL42 611847 +HGNC:29710 MRPL42P1 mitochondrial ribosomal protein L42 pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 2004-09-22 2012-11-14 285415 AY135266 NG_002665 12706105 PGOHUM00000261382 +HGNC:29711 MRPL42P2 mitochondrial ribosomal protein L42 pseudogene 2 pseudogene pseudogene Approved 6p22.3 06p22.3 2010-09-29 2010-09-29 346116 ENSG00000216364 OTTHUMG00000014298 NG_002907 12706105 PGOHUM00000243494 +HGNC:29712 MRPL42P3 mitochondrial ribosomal protein L42 pseudogene 3 pseudogene pseudogene Approved 6q24.2 06q24.2 2010-09-29 2010-09-29 359746 ENSG00000219297 OTTHUMG00000015736 NG_002862 12706105 PGOHUM00000243804 +HGNC:29713 MRPL42P4 mitochondrial ribosomal protein L42 pseudogene 4 pseudogene pseudogene Approved 7p12.3 07p12.3 2010-09-29 2010-09-29 346470 ENSG00000242552 OTTHUMG00000155552 NG_002908 12706105 PGOHUM00000232682 +HGNC:29714 MRPL42P5 mitochondrial ribosomal protein L42 pseudogene 5 pseudogene pseudogene Approved 15q15.1 15q15.1 2004-01-20 2014-11-19 359821 NG_002914 12706105 PGOHUM00000246757 +HGNC:44533 MRPL42P6 mitochondrial ribosomal protein L42 pseudogene 6 pseudogene pseudogene Approved 3q25.1 03q25.1 2012-11-14 2012-11-14 106480794 ENSG00000242810 OTTHUMG00000159862 NG_044124 PGOHUM00000261370 +HGNC:14517 MRPL43 mitochondrial ribosomal protein L43 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 bMRP36a Mitochondrial ribosomal proteins 646 2001-05-30 2015-08-25 84545 ENSG00000055950 OTTHUMG00000018920 uc001ksd.2 AB049656 XM_017016790 "CCDS7502|CCDS7503|CCDS7504|CCDS7505|CCDS76331" Q8N983 MGI:2137229 RGD:1307593 MRPL43 611848 +HGNC:16650 MRPL44 mitochondrial ribosomal protein L44 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "FLJ12701|FLJ13990" 39S ribosomal protein L44, mitochondrial Mitochondrial ribosomal proteins 646 2001-10-12 2016-10-05 65080 ENSG00000135900 OTTHUMG00000133164 uc002vnr.4 AK022763 NM_022915 CCDS2459 Q9H9J2 MGI:1916413 RGD:1309556 MRPL44 611849 356136 +HGNC:16651 MRPL45 mitochondrial ribosomal protein L45 protein-coding gene gene with protein product Approved 17q12 17q12 MGC11321 Mitochondrial ribosomal proteins 646 2001-10-12 2016-10-05 84311 ENSG00000278845 OTTHUMG00000188489 uc032gkt.2 BC006235 NM_032351 "CCDS11326|CCDS74047" Q9BRJ2 "11551941|12706105" MGI:1914286 RGD:1304913 MRPL45 611850 +HGNC:29715 MRPL45P1 mitochondrial ribosomal protein L45 pseudogene 1 pseudogene pseudogene Approved 2p11.2 02p11.2 2010-09-29 2010-09-29 359747 ENSG00000232508 OTTHUMG00000155050 NG_002863 12706105 PGOHUM00000240139 +HGNC:29716 MRPL45P2 mitochondrial ribosomal protein L45 pseudogene 2 pseudogene pseudogene Approved 17q21.32 17q21.32 2010-09-29 2010-09-29 653479 NR_033934 12706105 +HGNC:1192 MRPL46 mitochondrial ribosomal protein L46 protein-coding gene gene with protein product Approved 15q25.3 15q25.3 "LIECG2|P2ECSL" C15orf4 chromosome 15 open reading frame 4 Mitochondrial ribosomal proteins 646 1999-12-01 2001-12-14 2001-12-10 2014-11-19 26589 ENSG00000259494 OTTHUMG00000148683 uc002bmj.3 AF210056 NM_022163 CCDS10341 Q9H2W6 "11761714|11551941" MGI:1914558 RGD:1309123 MRPL46 611851 +HGNC:16652 MRPL47 mitochondrial ribosomal protein L47 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "CGI-204|NCM1" nasopharyngeal carcinoma metastasis-related 1 Mitochondrial ribosomal proteins 646 2001-10-12 2014-11-19 57129 ENSG00000136522 OTTHUMG00000157784 uc003fjz.5 AF285120 NM_020409 "CCDS3232|CCDS3233" Q9HD33 11551941 MGI:1921850 RGD:1307531 MRPL47 611852 +HGNC:16653 MRPL48 mitochondrial ribosomal protein L48 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 CGI-118 Mitochondrial ribosomal proteins 646 2001-10-12 2012-09-13 51642 ENSG00000175581 OTTHUMG00000168048 uc001ouh.5 AF151876 NM_016055 "CCDS44676|CCDS81594" Q96GC5 10810093 MGI:1289321 RGD:1307576 MRPL48 611853 +HGNC:21379 MRPL48P1 mitochondrial ribosomal protein L48 pseudogene 1 pseudogene pseudogene Approved 6p24.3 06p24.3 "MRPL48L1|dJ290I10.4" 2003-06-11 2014-11-18 221717 ENSG00000238076 OTTHUMG00000014231 AY135273 NG_002430 PGOHUM00000243061 +HGNC:1176 MRPL49 mitochondrial ribosomal protein L49 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "NOF|NOF1|L49mt" "neighbor of FAU|next to FAU" C11orf4 chromosome 11 open reading frame 4 Mitochondrial ribosomal proteins 646 1998-08-06 2001-10-19 2001-10-16 2014-11-19 740 ENSG00000149792 OTTHUMG00000165608 uc001oda.3 NM_004927 CCDS8096 Q13405 8786148 MGI:108180 RGD:1309920 MRPL49 606866 +HGNC:29717 MRPL49P1 mitochondrial ribosomal protein L49 pseudogene 1 pseudogene pseudogene Approved 5q12.3 05q12.3 2010-09-29 2010-09-29 359748 ENSG00000224296 OTTHUMG00000162389 NG_002864 12706105 PGOHUM00000251370 +HGNC:29718 MRPL49P2 mitochondrial ribosomal protein L49 pseudogene 2 pseudogene pseudogene Approved 8p22 08p22 2004-09-22 2012-11-14 346711 ENSG00000253934 OTTHUMG00000163856 AY135275 NG_002836 12706105 PGOHUM00000249581 +HGNC:16654 MRPL50 mitochondrial ribosomal protein L50 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "FLJ20493|MRP-L50" mitochondrial 39S ribosomal protein L50 Mitochondrial ribosomal proteins 646 2001-10-12 2015-08-25 54534 ENSG00000136897 OTTHUMG00000020384 uc004bbe.3 AK000500 NM_019051 CCDS6753 Q8N5N7 MGI:107329 RGD:1308008 MRPL50 611854 +HGNC:29719 MRPL50P1 mitochondrial ribosomal protein L50 pseudogene 1 pseudogene pseudogene Approved 2p22.3 02p22.3 2004-09-22 2012-11-14 351143 ENSG00000234587 OTTHUMG00000152145 AY135276 NG_002841 12706105 PGOHUM00000240012 +HGNC:29720 MRPL50P2 mitochondrial ribosomal protein L50 pseudogene 2 pseudogene pseudogene Approved 2q33.2 02q33.2 2010-09-29 2010-09-29 359749 ENSG00000238285 OTTHUMG00000154584 NG_002865 12706105 PGOHUM00000240492 +HGNC:29721 MRPL50P3 mitochondrial ribosomal protein L50 pseudogene 3 pseudogene pseudogene Approved 5q35.3 05q35.3 2010-09-29 2010-09-29 359750 NG_002866 12706105 PGOHUM00000235858 +HGNC:29722 MRPL50P4 mitochondrial ribosomal protein L50 pseudogene 4 pseudogene pseudogene Approved 10q21.2 10q21.2 2010-09-29 2010-09-29 359751 ENSG00000235469 OTTHUMG00000018281 NG_002867 12706105 PGOHUM00000238498 +HGNC:14044 MRPL51 mitochondrial ribosomal protein L51 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CDA09|HSPC241|bMRP64" MRP64 mitochondrial ribosomal protein 64 Mitochondrial ribosomal proteins 646 2001-05-29 2002-01-11 2002-01-07 2016-01-15 51258 ENSG00000111639 OTTHUMG00000168512 uc001qom.3 AB051355 NM_016497 CCDS8547 Q4U2R6 "11551941|11543634" MGI:1913743 RGD:1306686 MRPL51 611855 +HGNC:29723 MRPL51P1 mitochondrial ribosomal protein L51 pseudogene 1 pseudogene pseudogene Approved 4p15.2 04p15.2 2004-09-27 2004-09-27 351773 AY135280 NG_002843 12706105 +HGNC:29724 MRPL51P2 mitochondrial ribosomal protein L51 pseudogene 2 pseudogene pseudogene Approved 21q22.3 21q22.3 2004-09-27 2011-02-24 343819 ENSG00000232777 OTTHUMG00000086843 AY135281 NG_002834 12706105 PGOHUM00000239088 +HGNC:16655 MRPL52 mitochondrial ribosomal protein L52 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 Mitochondrial ribosomal proteins 646 2001-10-12 2014-11-19 122704 ENSG00000172590 OTTHUMG00000028703 uc001wgx.5 AK000450 NM_180982 "CCDS9575|CCDS9576|CCDS41917|CCDS41918|CCDS81791" Q86TS9 "11551941|11943462" MGI:1916086 RGD:1309297 MRPL52 611856 +HGNC:16684 MRPL53 mitochondrial ribosomal protein L53 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 Mitochondrial ribosomal proteins 646 2001-10-12 2014-11-19 116540 ENSG00000204822 OTTHUMG00000129961 uc002sln.4 BC012163 NM_053050 CCDS1944 Q96EL3 11551941 MGI:1915749 RGD:1306709 MRPL53 611857 +HGNC:29725 MRPL53P1 mitochondrial ribosomal protein L53 pseudogene 1 pseudogene pseudogene Approved 1p13.2 01p13.2 2010-09-29 2010-09-29 359752 ENSG00000235299 OTTHUMG00000011904 NG_002868 12706105 PGOHUM00000244146 +HGNC:16685 MRPL54 mitochondrial ribosomal protein L54 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 Mitochondrial ribosomal proteins 646 2001-10-12 2014-11-19 116541 ENSG00000183617 OTTHUMG00000180873 uc002lyq.5 NM_172251 CCDS12111 Q6P161 11551941 MGI:1913297 RGD:1305694 MRPL54 611858 +HGNC:16686 MRPL55 mitochondrial ribosomal protein L55 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 Mitochondrial ribosomal proteins 646 2001-10-12 2015-08-25 128308 ENSG00000162910 OTTHUMG00000037965 uc001hsa.5 AK056987 XM_059233 "CCDS1567|CCDS44325" Q7Z7F7 MGI:1914462 RGD:1308161 MRPL55 611859 +HGNC:14514 MRPL57 mitochondrial ribosomal protein L57 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 MRP63 mitochondrial ribosomal protein 63 Mitochondrial ribosomal proteins 646 2001-05-30 2014-02-10 2014-02-10 2014-11-18 78988 ENSG00000173141 OTTHUMG00000016532 AB049957 NM_024026 CCDS9296 Q9BQC6 23908630 MGI:1915090 RGD:1594654 611997 +HGNC:29686 MRPL57P1 mitochondrial ribosomal protein L57 pseudogene 1 pseudogene pseudogene Approved 1p13.2 01p13.2 MRP63P1 mitochondrial ribosomal protein 63 pseudogene 1 2004-09-22 2014-02-10 2014-02-10 2015-06-09 126581 ENSG00000273698 OTTHUMG00000187529 AY135236 NG_002827 12706105 PGOHUM00000295797 +HGNC:29687 MRPL57P2 mitochondrial ribosomal protein L57 pseudogene 2 pseudogene pseudogene Approved 1q42.13 01q42.13 MRP63P2 mitochondrial ribosomal protein 63 pseudogene 2 2004-10-11 2014-02-10 2014-02-10 2014-02-10 359729 AY135237 NG_002845 12706105 +HGNC:29688 MRPL57P3 mitochondrial ribosomal protein L57 pseudogene 3 pseudogene pseudogene Approved 3p21.31 03p21.31 MRP63P3 mitochondrial ribosomal protein 63 pseudogene 3 2004-09-22 2014-02-10 2014-02-10 2015-06-09 359730 ENSG00000275940 OTTHUMG00000187555 AY135238 NG_002846 12706105 PGOHUM00000299426 +HGNC:29689 MRPL57P6 mitochondrial ribosomal protein L57 pseudogene 6 pseudogene pseudogene Approved 5q34 05q34 MRP63P6 mitochondrial ribosomal protein 63 pseudogene 6 2004-09-22 2014-02-10 2014-02-10 2015-06-09 134490 ENSG00000249449 OTTHUMG00000163327 AY135241 NG_002829 12706105 PGOHUM00000301174 +HGNC:29690 MRPL57P7 mitochondrial ribosomal protein L57 pseudogene 7 pseudogene pseudogene Approved 8q22.2 08q22.2 MRP63P7 mitochondrial ribosomal protein 63 pseudogene 7 2004-10-14 2014-02-10 2014-02-10 2015-06-09 359731 ENSG00000254312 OTTHUMG00000164653 AY135242 NG_002847 12706105 PGOHUM00000303320 +HGNC:29691 MRPL57P8 mitochondrial ribosomal protein L57 pseudogene 8 pseudogene pseudogene Approved 14q13.2 14q13.2 MRP63P8 mitochondrial ribosomal protein 63 pseudogene 8 2004-10-11 2014-02-10 2014-02-10 2014-02-10 359732 ENSG00000282625 OTTHUMG00000191401 AY135243 NG_002848 12706105 +HGNC:29692 MRPL57P9 mitochondrial ribosomal protein L57 pseudogene 9 pseudogene pseudogene Approved 14q22.1 14q22.1 MRP63P9 mitochondrial ribosomal protein 63 pseudogene 9 2004-09-22 2014-02-10 2014-02-10 2014-02-10 359733 AY135244 NG_002849 12706105 +HGNC:23965 MRPL57P10 mitochondrial ribosomal protein L57 pseudogene 10 pseudogene pseudogene Approved Yp11.2 Yp11.2 MRP63P10 mitochondrial ribosomal protein 63 pseudogene 10 2004-09-22 2014-02-10 2014-02-10 2014-02-10 347587 AY135245 NG_002837 12706105 +HGNC:5359 MRPL58 mitochondrial ribosomal protein L58 protein-coding gene gene with protein product Approved 17q25 17q25 DS-1 ICT1 immature colon carcinoma transcript 1 1998-02-18 2016-06-06 2016-06-06 2016-06-06 3396 ENSG00000167862 OTTHUMG00000179218 uc002jmm.4 X81788 NM_001545 CCDS11711 Q14197 "8575443|20186120|27029019" MGI:1915822 RGD:1307942 603000 3.1.1.29 +HGNC:14041 MRPL entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-08-09 +HGNC:14495 MRPS2 mitochondrial ribosomal protein S2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 CGI-91 Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 51116 ENSG00000122140 OTTHUMG00000020910 uc004cfv.6 AB051627 XM_006717136 CCDS6990 Q9Y399 MGI:2153089 RGD:1309116 MRPS2 611971 +HGNC:14498 MRPS5 mitochondrial ribosomal protein S5 protein-coding gene gene with protein product Approved 2q11.1 02q11.1 "MRP-S5|S5mt" mitochondrial 28S ribosomal protein S5 Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 64969 ENSG00000144029 OTTHUMG00000130394 uc002sub.4 AB049940 NM_031902 CCDS2010 P82675 MGI:1924971 RGD:1308318 MRPS5 611972 +HGNC:29778 MRPS5P3 mitochondrial ribosomal protein S5 pseudogene 3 pseudogene pseudogene Approved 5q23.2 05q23.2 2004-10-11 2011-02-09 133615 ENSG00000214743 OTTHUMG00000163027 AY135348 NG_002662 12706105 PGOHUM00000251331 +HGNC:29779 MRPS5P4 mitochondrial ribosomal protein S5 pseudogene 4 pseudogene pseudogene Approved 18q21.32 18q21.32 2004-09-27 2012-11-14 359797 ENSG00000266915 OTTHUMG00000179958 AY135349 NG_002900 12706105 PGOHUM00000235080 +HGNC:14051 MRPS6 mitochondrial ribosomal protein S6 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "MRP-S6|RPMS6" C21orf101 chromosome 21 open reading frame 101 Mitochondrial ribosomal proteins 646 2001-02-28 2002-06-20 2015-08-25 64968 ENSG00000243927 OTTHUMG00000065820 uc002ytp.2 AB051347 NM_032476 CCDS33548 P82932 MGI:2153111 RGD:2322928 MRPS6 611973 +HGNC:29780 MRPS6P1 mitochondrial ribosomal protein S6 pseudogene 1 pseudogene pseudogene Approved 1p36.11 01p36.11 2010-09-29 2010-09-29 359780 NG_002896 12706105 PGOHUM00000243940 +HGNC:29781 MRPS6P2 mitochondrial ribosomal protein S6 pseudogene 2 pseudogene pseudogene Approved 1p32.3 01p32.3 2010-09-29 2010-09-29 359781 ENSG00000237130 OTTHUMG00000007929 NG_002897 12706105 PGOHUM00000244714 +HGNC:29782 MRPS6P4 mitochondrial ribosomal protein S6 pseudogene 4 pseudogene pseudogene Approved 12q21.33 12q21.33 2010-09-29 2010-09-29 359782 ENSG00000257820 OTTHUMG00000169911 NG_002898 12706105 PGOHUM00000239884 +HGNC:14499 MRPS7 mitochondrial ribosomal protein S7 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "MRP-S|RP-S7|RPMS7" Mitochondrial ribosomal proteins 646 2001-01-26 2015-08-25 51081 ENSG00000125445 OTTHUMG00000179484 uc002jnm.5 AB051348 NM_015971 CCDS11718 Q9Y2R9 MGI:1354367 RGD:1309164 MRPS7 611974 460660 +HGNC:29783 MRPS7P1 mitochondrial ribosomal protein S7 pseudogene 1 pseudogene pseudogene Approved 8p11.23 08p11.23 2010-09-29 2012-10-16 359783 NG_002899 12706105 PGOHUM00000263191 +HGNC:29784 MRPS7P2 mitochondrial ribosomal protein S7 pseudogene 2 pseudogene pseudogene Approved 12p13.1 12p13.1 2004-10-11 2004-10-11 341469 AY135355 NG_002833 12706105 +HGNC:14501 MRPS9 mitochondrial ribosomal protein S9 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 "RPMS9|MRP-S9|S9mt" 28S ribosomal protein S9, mitochondrial Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-19 64965 ENSG00000135972 OTTHUMG00000130807 uc002tcn.5 NM_182640 CCDS2065 P82933 11279123 MGI:1916777 RGD:1306558 MRPS9 611975 +HGNC:14502 MRPS10 mitochondrial ribosomal protein S10 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 FLJ10567 Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-18 55173 ENSG00000048544 OTTHUMG00000014694 uc003osa.5 XM_011514724 CCDS4866 P82664 11279123 MGI:1928139 RGD:1311516 MRPS10 611976 +HGNC:29728 MRPS10P1 mitochondrial ribosomal protein S10 pseudogene 1 pseudogene pseudogene Approved 1q24.2 01q24.2 2005-06-28 2012-11-14 359753 ENSG00000235378 OTTHUMG00000035958 AY135284 NG_002869 12706105 PGOHUM00000245080 +HGNC:29727 MRPS10P2 mitochondrial ribosomal protein S10 pseudogene 2 pseudogene pseudogene Approved 3p26.1 03p26.1 "MRPS10P3|MRPS10P4" 2005-06-28 2012-11-14 359802 ENSG00000234325 OTTHUMG00000154995 AY135286 NG_002903 12706105 PGOHUM00000237523 +HGNC:29729 MRPS10P5 mitochondrial ribosomal protein S10 pseudogene 5 pseudogene pseudogene Approved 9p12 09p12 2005-06-28 2005-08-09 359754 AY135288 NG_002870 12706105 +HGNC:14050 MRPS11 mitochondrial ribosomal protein S11 protein-coding gene gene with protein product Approved 15q25.3 15q25.3 "FLJ23406|HCC-2|FLJ22512" cervical cancer proto-oncogene 2 Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 64963 ENSG00000181991 OTTHUMG00000148678 uc002bml.4 AB051349 NM_022839 "CCDS10342|CCDS10343" P82912 11402041 MGI:1915244 RGD:1559901 MRPS11 611977 +HGNC:16584 MRPS11P1 mitochondrial ribosomal protein S11 pseudogene 1 pseudogene pseudogene Approved 20p11.23 20p11.23 dJ746H2.1 2001-09-17 2016-10-05 128774 ENSG00000225803 OTTHUMG00000032012 AL109953 NG_000977 PGOHUM00000247460 +HGNC:10380 MRPS12 mitochondrial ribosomal protein S12 protein-coding gene gene with protein product Approved 19q13.1-q13.2 19q13.1-q13.2 "RPS12|RPSM12" RPMS12 Mitochondrial ribosomal proteins 646 1997-04-10 2015-08-25 6183 ENSG00000128626 OTTHUMG00000182692 uc002okc.4 Y11681 NM_021107 CCDS12525 O15235 "9545647|9790755" MGI:1346333 RGD:1306221 MRPS12 603021 +HGNC:14049 MRPS14 mitochondrial ribosomal protein S14 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 HSMRPS14 Mitochondrial ribosomal proteins 646 2001-02-28 2015-08-25 63931 ENSG00000120333 OTTHUMG00000034878 uc001gkk.4 AB051350 NM_022100 CCDS1316 O60783 MGI:1928141 RGD:1309432 MRPS14 611978 +HGNC:14504 MRPS15 mitochondrial ribosomal protein S15 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ11564 Mitochondrial ribosomal proteins 646 2001-01-26 2015-08-25 64960 ENSG00000116898 OTTHUMG00000008042 uc001cas.3 AB049946 NM_031280 CCDS411 P82914 MGI:1913657 RGD:1359675 MRPS15 611979 +HGNC:29730 MRPS15P1 mitochondrial ribosomal protein S15 pseudogene 1 pseudogene pseudogene Approved 15q24.1 15q24.1 2010-09-29 2010-09-29 359755 ENSG00000259186 OTTHUMG00000172554 NG_002871 12706105 PGOHUM00000246848 +HGNC:29731 MRPS15P2 mitochondrial ribosomal protein S15 pseudogene 2 pseudogene pseudogene Approved 19q13.31 19q13.31 2010-09-29 2010-09-29 359756 OTTHUMG00000182355 NG_002872 12706105 PGOHUM00000234717 +HGNC:14048 MRPS16 mitochondrial ribosomal protein S16 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 CGI-132 Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 51021 ENSG00000182180 OTTHUMG00000018454 uc001jts.1 AB051351 XM_017016305 CCDS7323 Q9Y3D3 10810093 MGI:1913492 RGD:1582995 MRPS16 609204 267232 +HGNC:29732 MRPS16P1 mitochondrial ribosomal protein S16 pseudogene 1 pseudogene pseudogene Approved 8q21.3 08q21.3 2004-10-11 2012-11-14 137406 ENSG00000229182 OTTHUMG00000164065 AY135292 NG_002648 12706105 PGOHUM00000249744 +HGNC:16541 MRPS16P2 mitochondrial ribosomal protein S16 pseudogene 2 pseudogene pseudogene Approved 20q13.32 20q13.32 bA379F14.1 MRPS16P mitochondrial ribosomal protein S16 pseudogene 2001-09-17 2012-11-14 2012-11-14 2014-11-19 128609 ENSG00000232925 OTTHUMG00000032863 NG_000968 PGOHUM00000247683 +HGNC:29733 MRPS16P3 mitochondrial ribosomal protein S16 pseudogene 3 pseudogene pseudogene Approved 22q12.3 22q12.3 2004-09-27 2012-11-14 338388 ENSG00000226336 OTTHUMG00000150587 AY135294 NG_002649 12706105 PGOHUM00000246577 +HGNC:14047 MRPS17 mitochondrial ribosomal protein S17 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 "HSPC011|RPMS17|MRP-S17" 28S ribosomal protein S17, mitochondrial Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 51373 ENSG00000239789 OTTHUMG00000023153 uc003trd.4 AB051352 NM_015969 CCDS5520 Q9Y2R5 11279123 MGI:1913508 RGD:1307650 MRPS17 611980 +HGNC:29734 MRPS17P1 mitochondrial ribosomal protein S17 pseudogene 1 pseudogene pseudogene Approved 1p34.1 01p34.1 2005-06-28 2013-02-15 359803 ENSG00000268949 OTTHUMG00000008584 AY135296 NG_004092 12706105 PGOHUM00000244000 +HGNC:29736 MRPS17P3 mitochondrial ribosomal protein S17 pseudogene 3 pseudogene pseudogene Approved 3p12.3 03p12.3 2010-09-29 2010-09-29 359757 ENSG00000239226 OTTHUMG00000158844 NG_002873 12706105 PGOHUM00000238080 +HGNC:29737 MRPS17P5 mitochondrial ribosomal protein S17 pseudogene 5 pseudogene pseudogene Approved 6q22.33 06q22.33 2010-09-29 2010-09-29 359758 ENSG00000274493 OTTHUMG00000187641 NG_002874 12706105 PGOHUM00000250215 +HGNC:29738 MRPS17P6 mitochondrial ribosomal protein S17 pseudogene 6 pseudogene pseudogene Approved 14q11.2 14q11.2 2010-09-29 2010-09-29 359759 NG_002875 12706105 +HGNC:29735 MRPS17P7 mitochondrial ribosomal protein S17 pseudogene 7 pseudogene pseudogene Approved 18q21.31 18q21.31 2005-06-28 2012-11-14 342776 AY135298 NG_004091 12706105 PGOHUM00000234938 +HGNC:29739 MRPS17P9 mitochondrial ribosomal protein S17 pseudogene 9 pseudogene pseudogene Approved Xq24 Xq24 2010-09-29 2010-09-29 359760 ENSG00000227814 OTTHUMG00000022270 NG_002876 12706105 PGOHUM00000250086 +HGNC:14515 MRPS18A mitochondrial ribosomal protein S18A protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "FLJ10548|MRPS18-3" Mitochondrial ribosomal proteins 646 2001-05-30 2016-10-05 55168 ENSG00000096080 OTTHUMG00000014750 uc003ovy.3 AB049952 NM_018135 "CCDS4906|CCDS55006" Q9NVS2 "11279123|11543634" MGI:1915815 RGD:735229 MRPS18A 611981 +HGNC:29740 MRPS18AP1 mitochondrial ribosomal protein S18A pseudogene 1 pseudogene pseudogene Approved 3p21.31 03p21.31 2010-09-29 2012-10-16 359761 ENSG00000229759 OTTHUMG00000156829 NG_002877 12706105 PGOHUM00000263114 +HGNC:14516 MRPS18B mitochondrial ribosomal protein S18B protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "MRPS18-2|PTD017|C6orf14|HSPC183" Mitochondrial ribosomal proteins 646 2001-05-30 2016-10-05 28973 ENSG00000204568 OTTHUMG00000031268 uc063ynd.1 AF100761 NM_014046 CCDS4682 Q9Y676 11279123 MGI:1914223 RGD:1302998 MRPS18B 611982 +HGNC:29741 MRPS18BP1 mitochondrial ribosomal protein S18B pseudogene 1 pseudogene pseudogene Approved 1q41 01q41 2010-09-29 2014-11-19 359762 ENSG00000226013 OTTHUMG00000037077 NG_002878 12706105 +HGNC:29742 MRPS18BP2 mitochondrial ribosomal protein S18B pseudogene 2 pseudogene pseudogene Approved 2q22.1 02q22.1 2010-09-29 2010-09-29 359763 ENSG00000235232 OTTHUMG00000153647 NG_002879 12706105 PGOHUM00000240966 +HGNC:16633 MRPS18C mitochondrial ribosomal protein S18C protein-coding gene gene with protein product Approved 4q21.23 04q21.23 "MRPS18-1|CGI-134|FLJ11146|FLJ22967" Mitochondrial ribosomal proteins 646 2001-09-20 2016-10-05 51023 ENSG00000163319 OTTHUMG00000130430 uc003hor.5 NM_016067 "CCDS3604|CCDS75159|CCDS77933" Q9Y3D5 "11279123|10810093" MGI:1915985 RGD:1307997 MRPS18C 611983 +HGNC:29743 MRPS18CP2 mitochondrial ribosomal protein S18C pseudogene 2 pseudogene pseudogene Approved 8p23.1 08p23.1 2004-09-22 2012-11-14 286043 AY135308 NG_002666 12706105 PGOHUM00000249225 +HGNC:29744 MRPS18CP3 mitochondrial ribosomal protein S18C pseudogene 3 pseudogene pseudogene Approved 8p22 08p22 2010-09-29 2010-09-29 359764 NG_002880 12706105 PGOHUM00000249584 +HGNC:29745 MRPS18CP4 mitochondrial ribosomal protein S18C pseudogene 4 pseudogene pseudogene Approved 12p13.1 12p13.1 2004-09-22 2012-11-14 349842 ENSG00000255763 OTTHUMG00000168654 AY135310 NG_002839 12706105 PGOHUM00000239684 +HGNC:29746 MRPS18CP5 mitochondrial ribosomal protein S18C pseudogene 5 pseudogene pseudogene Approved 15q12 15q12 2010-09-29 2010-09-29 359765 NG_002881 12706105 PGOHUM00000251169 +HGNC:29747 MRPS18CP6 mitochondrial ribosomal protein S18C pseudogene 6 pseudogene pseudogene Approved 22q13.31 22q13.31 2004-09-27 2012-11-14 343901 ENSG00000228807 OTTHUMG00000150467 AY135312 NG_002835 12706105 PGOHUM00000246350 +HGNC:14505 MRPS18 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-08-09 +HGNC:14046 MRPS21 mitochondrial ribosomal protein S21 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 Mitochondrial ribosomal proteins 646 2001-02-28 2016-10-05 54460 ENSG00000266472 OTTHUMG00000012544 uc001euk.5 AB051353 NM_018997 CCDS950 P82921 MGI:1913542 RGD:1592330 MRPS21 611984 +HGNC:29748 MRPS21P1 mitochondrial ribosomal protein S21 pseudogene 1 pseudogene pseudogene Approved 1p31.3 01p31.3 2004-09-27 2012-11-14 199900 ENSG00000234496 OTTHUMG00000009308 AY135313 NG_002663 12706105 PGOHUM00000244058 +HGNC:29749 MRPS21P2 mitochondrial ribosomal protein S21 pseudogene 2 pseudogene pseudogene Approved 1q23.1 01q23.1 2006-01-17 2012-11-14 359766 ENSG00000227425 OTTHUMG00000022446 NG_002882 12706105 PGOHUM00000245021 +HGNC:29750 MRPS21P3 mitochondrial ribosomal protein S21 pseudogene 3 pseudogene pseudogene Approved 1q31.3 01q31.3 2006-01-17 2012-11-14 359767 ENSG00000221879 OTTHUMG00000035662 NG_002883 12706105 PGOHUM00000245145 +HGNC:29751 MRPS21P4 mitochondrial ribosomal protein S21 pseudogene 4 pseudogene pseudogene Approved 9p13.1 09p13.1 2006-01-17 2006-01-17 359768 NG_002884 12706105 +HGNC:29752 MRPS21P5 mitochondrial ribosomal protein S21 pseudogene 5 pseudogene pseudogene Approved 10p12.1 10p12.1 2006-01-17 2016-08-16 359769 ENSG00000226395 OTTHUMG00000017865 NG_002885 12706105 +HGNC:29753 MRPS21P6 mitochondrial ribosomal protein S21 pseudogene 6 pseudogene pseudogene Approved 10q26.13 10q26.13 2006-01-17 2012-11-14 359770 ENSG00000214298 OTTHUMG00000019225 NG_002886 12706105 PGOHUM00000238964 +HGNC:29754 MRPS21P7 mitochondrial ribosomal protein S21 pseudogene 7 pseudogene pseudogene Approved 16q12.1 16q12.1 2006-01-17 2015-08-26 359771 ENSG00000260024 OTTHUMG00000173442 NG_002887 12706105 PGOHUM00000293856 +HGNC:29755 MRPS21P8 mitochondrial ribosomal protein S21 pseudogene 8 pseudogene pseudogene Approved 16q12.1 16q12.1 2004-10-11 2015-08-26 350297 ENSG00000259978 OTTHUMG00000173444 AY135320 NG_002840 12706105 PGOHUM00000293857 +HGNC:29756 MRPS21P9 mitochondrial ribosomal protein S21 pseudogene 9 pseudogene pseudogene Approved 17q21.33 17q21.33 2006-01-17 2012-11-14 359772 ENSG00000262759 OTTHUMG00000177425 NG_002888 12706105 PGOHUM00000237105 +HGNC:14508 MRPS22 mitochondrial ribosomal protein S22 protein-coding gene gene with protein product Approved 3q23 03q23 "MRP-S22|GK002|C3orf5|GIBT" Mitochondrial ribosomal proteins 646 2001-01-26 2014-11-18 56945 ENSG00000175110 OTTHUMG00000159910 uc003etb.4 AF226045 NM_020191 CCDS3107 P82650 11175783 MGI:1928137 RGD:1585674 MRPS22 605810 140069 +HGNC:29757 MRPS22P1 mitochondrial ribosomal protein S22 pseudogene 1 pseudogene pseudogene Approved Xq21.31 Xq21.31 2010-09-29 2010-09-29 359773 NG_002889 12706105 PGOHUM00000241431 +HGNC:14509 MRPS23 mitochondrial ribosomal protein S23 protein-coding gene gene with protein product Approved 17q22 17q22 "MRP-S23|CGI-138|HSPC329" Mitochondrial ribosomal proteins 646 2001-01-26 2016-01-15 51649 ENSG00000181610 OTTHUMG00000178774 uc002ivc.4 AB061206 NM_016070 CCDS11598 Q9Y3D9 11279123 MGI:1928138 RGD:1306963 MRPS23 611985 +HGNC:29758 MRPS23P1 mitochondrial ribosomal protein S23 pseudogene 1 pseudogene pseudogene Approved 7p13 07p13 2004-09-22 2004-09-22 352290 AY135323 NG_002844 12706105 +HGNC:14510 MRPS24 mitochondrial ribosomal protein S24 protein-coding gene gene with protein product Approved 7p13 07p13 "MRP-S24|HSPC335" Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 64951 ENSG00000062582 OTTHUMG00000023175 uc003tit.2 AB061207 NM_032014 CCDS5473 Q96EL2 "8127713|11279123" MGI:1928142 RGD:1306014 MRPS24 611986 +HGNC:29759 MRPS24P1 mitochondrial ribosomal protein S24 pseudogene 1 pseudogene pseudogene Approved 11p15.4 11p15.4 2004-10-14 2004-10-14 338389 AY135324 NG_002650 12706105 +HGNC:14511 MRPS25 mitochondrial ribosomal protein S25 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "MRP-S25|FLJ00023|DKFZp313H0817|RPMS25" mitochondrial 28S ribosomal protein S25 Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 64432 ENSG00000131368 OTTHUMG00000129836 uc003bzl.4 AB061208 NM_022497 CCDS2622 P82663 11279123 MGI:1928140 RGD:1308770 MRPS25 611987 +HGNC:29760 MRPS25P1 mitochondrial ribosomal protein S25 pseudogene 1 pseudogene pseudogene Approved 4q21.23 04q21.23 2004-09-22 2004-09-22 338390 AY135325 NG_002651 12706105 +HGNC:14045 MRPS26 mitochondrial ribosomal protein S26 protein-coding gene gene with protein product Approved 20p13 20p13 "MRP-S13|MRP-S26|RPMS13|dJ534B8.3" C20orf193 chromosome 20 open reading frame 193 Mitochondrial ribosomal proteins 646 2001-02-28 2004-09-22 2015-08-25 64949 ENSG00000125901 OTTHUMG00000031721 uc002whs.4 AB051354 NM_030811 CCDS13043 Q9BYN8 11543634 MGI:1333830 RGD:1308733 MRPS26 611988 +HGNC:14512 MRPS27 mitochondrial ribosomal protein S27 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 KIAA0264 Mitochondrial ribosomal proteins 646 2001-01-26 2015-08-25 23107 ENSG00000113048 OTTHUMG00000100951 uc003kbz.5 D87453 NM_015084 "CCDS4013|CCDS68890|CCDS75257" Q92552 MGI:1919064 RGD:1311829 MRPS27 611989 +HGNC:14513 MRPS28 mitochondrial ribosomal protein S28 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "MRP-S28|HSPC007|MRPS35" Mitochondrial ribosomal proteins 646 2001-01-26 2016-10-05 28957 ENSG00000147586 OTTHUMG00000164642 uc003ybp.4 AB061209 NM_014018 CCDS6226 Q9Y2Q9 "11279123|11042152" MGI:1913480 RGD:1597461 MRPS28 611990 +HGNC:8769 MRPS30 mitochondrial ribosomal protein S30 protein-coding gene gene with protein product Approved 5p12 05p12 PAP PDCD9 Mitochondrial ribosomal proteins 646 1999-07-30 2001-11-09 2016-10-05 10884 ENSG00000112996 OTTHUMG00000096967 uc003joh.4 AF146192 NM_016640 CCDS3951 Q9NP92 "10640817|11279123" MGI:1926237 RGD:1309697 MRPS30 611991 +HGNC:16632 MRPS31 mitochondrial ribosomal protein S31 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 IMOGN38 Mitochondrial ribosomal proteins 646 2001-09-20 2014-11-19 10240 ENSG00000102738 OTTHUMG00000016777 uc001uxm.5 Z68747 XR_001749453 CCDS9372 Q92665 "11279123|8567980" MGI:1913153 RGD:1307668 MRPS31 611992 +HGNC:29763 MRPS31P1 mitochondrial ribosomal protein S31 pseudogene 1 pseudogene pseudogene Approved 3p21.33 03p21.33 2004-10-14 2010-11-24 351449 ENSG00000275256 OTTHUMG00000187551 AY135328 NG_002842 12706105 PGOHUM00000238005 +HGNC:39252 MRPS31P2 mitochondrial ribosomal protein S31 pseudogene 2 pseudogene pseudogene Approved 13q12.11 13q12.11 2010-11-24 2010-11-24 341757 ENSG00000232894 OTTHUMG00000016494 NG_004674 PGOHUM00000248310 +HGNC:42649 MRPS31P4 mitochondrial ribosomal protein S31 pseudogene 4 pseudogene pseudogene Approved 13q14.3 13q14.3 2011-08-10 2015-08-26 100885866 ENSG00000250299 OTTHUMG00000187323 NG_032700 +HGNC:39253 MRPS31P5 mitochondrial ribosomal protein S31 pseudogene 5 pseudogene pseudogene Approved 13q14.3 13q14.3 MRPS31P3 mitochondrial ribosomal protein S31 pseudogene 3 2010-11-24 2012-11-14 2012-11-14 2012-11-14 100887750 ENSG00000243406 OTTHUMG00000016960 NR_051963 PGOHUM00000248405 +HGNC:16634 MRPS33 mitochondrial ribosomal protein S33 protein-coding gene gene with protein product Approved 7q34 07q34 CGI-139 Mitochondrial ribosomal proteins 646 2001-09-20 2015-08-25 51650 ENSG00000090263 OTTHUMG00000157456 uc003vwe.5 AF078858 NM_053035 CCDS5864 Q9Y291 "11279123|10810093" MGI:1338046 RGD:1309217 MRPS33 611993 +HGNC:29764 MRPS33P1 mitochondrial ribosomal protein S33 pseudogene 1 pseudogene pseudogene Approved 1q21.3 01q21.3 2004-09-22 2011-03-17 148330 AY135333 NG_002830 12706105 PGOHUM00000244275 +HGNC:29765 MRPS33P2 mitochondrial ribosomal protein S33 pseudogene 2 pseudogene pseudogene Approved 4p14 04p14 2010-09-29 2010-09-29 359775 ENSG00000249649 OTTHUMG00000160426 NG_002891 12706105 PGOHUM00000245498 +HGNC:29766 MRPS33P3 mitochondrial ribosomal protein S33 pseudogene 3 pseudogene pseudogene Approved 4q26 04q26 2010-09-29 2010-09-29 359776 ENSG00000251308 OTTHUMG00000161076 NG_002892 12706105 PGOHUM00000246041 +HGNC:29767 MRPS33P4 mitochondrial ribosomal protein S33 pseudogene 4 pseudogene pseudogene Approved 20q13.2 20q13.2 2010-09-29 2010-09-29 359777 ENSG00000234821 OTTHUMG00000032758 NG_002893 12706105 PGOHUM00000247675 +HGNC:16618 MRPS34 mitochondrial ribosomal protein S34 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "MRP-S12|MGC2616" Mitochondrial ribosomal proteins 646 2001-09-18 2014-11-19 65993 ENSG00000074071 OTTHUMG00000128636 uc002cmo.4 BC001182 NM_023936 "CCDS10444|CCDS73805" P82930 MGI:1930188 RGD:1305623 MRPS34 611994 +HGNC:16635 MRPS35 mitochondrial ribosomal protein S35 protein-coding gene gene with protein product Approved 12p11.22 12p11.22 "MRPS28|MDS023" Mitochondrial ribosomal proteins 646 2001-09-20 2016-10-05 60488 ENSG00000061794 OTTHUMG00000169215 uc001rih.4 AF182422 NM_021821 "CCDS8714|CCDS53769" P82673 11279123 MGI:2385255 RGD:1306720 MRPS35 611995 +HGNC:29768 MRPS35P1 mitochondrial ribosomal protein S35 pseudogene 1 pseudogene pseudogene Approved 3p25.3 03p25.3 2004-09-22 2004-09-22 339910 AY135337 NG_002832 12706105 +HGNC:29769 MRPS35P2 mitochondrial ribosomal protein S35 pseudogene 2 pseudogene pseudogene Approved 5q15 05q15 2010-09-29 2010-09-29 359778 ENSG00000250830 OTTHUMG00000162717 NG_002894 12706105 PGOHUM00000235324 +HGNC:29770 MRPS35P3 mitochondrial ribosomal protein S35 pseudogene 3 pseudogene pseudogene Approved 10q21.1 10q21.1 2004-09-27 2016-08-15 359779 ENSG00000270192 OTTHUMG00000184649 AY135339 NG_002895 12706105 PGOHUM00000290172 +HGNC:16631 MRPS36 mitochondrial ribosomal protein S36 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "DC47|MRP-S36" Mitochondrial ribosomal proteins 646 2001-09-20 2014-11-19 92259 ENSG00000134056 OTTHUMG00000162443 uc003jvq.4 NM_033281 CCDS34174 P82909 11279123 MGI:1913378 RGD:1309315 MRPS36 611996 +HGNC:29771 MRPS36P1 mitochondrial ribosomal protein S36 pseudogene 1 pseudogene pseudogene Approved 3p26.1 03p26.1 2005-06-28 2016-10-05 347705 ENSG00000236152 OTTHUMG00000154924 AY135340 NG_002709 12706105 PGOHUM00000237526 +HGNC:29772 MRPS36P2 mitochondrial ribosomal protein S36 pseudogene 2 pseudogene pseudogene Approved 4q35.2 04q35.2 2005-06-28 2016-10-05 347706 ENSG00000249539 OTTHUMG00000160311 AY135341 NG_002711 12706105 PGOHUM00000246158 +HGNC:29773 MRPS36P3 mitochondrial ribosomal protein S36 pseudogene 3 pseudogene pseudogene Approved 8q24.13 08q24.13 2005-06-28 2011-07-28 347704 ENSG00000253814 OTTHUMG00000164968 AY135342 NG_002707 12706105 PGOHUM00000249785 +HGNC:29774 MRPS36P4 mitochondrial ribosomal protein S36 pseudogene 4 pseudogene pseudogene Approved 11q23.1 11q23.1 2005-06-28 2016-10-05 347702 ENSG00000255231 OTTHUMG00000167157 AY135343 NG_002703 12706105 PGOHUM00000242893 +HGNC:29775 MRPS36P5 mitochondrial ribosomal protein S36 pseudogene 5 pseudogene pseudogene Approved 12q12 12q12 2005-03-04 2011-07-28 347703 ENSG00000257927 OTTHUMG00000169351 AY135344 NG_002705 12706105 PGOHUM00000239425 +HGNC:29776 MRPS36P6 mitochondrial ribosomal protein S36 pseudogene 6 pseudogene pseudogene Approved 20p12.1 20p12.1 2005-06-28 2011-07-28 347707 AY135345 NG_002713 12706105 PGOHUM00000247447 +HGNC:7234 MRRF mitochondrial ribosome recycling factor protein-coding gene gene with protein product Approved 9q33.2 09q33.2 RRF 1999-07-21 2016-10-05 92399 ENSG00000148187 OTTHUMG00000020600 uc010mwa.4 AA115320 NM_138777 "CCDS6840|CCDS48013|CCDS55336" Q96E11 "9838146|10773675" MGI:1915121 RGD:1305897 MRRF 604602 +HGNC:35238 MRRFP1 mitochondrial ribosome recycling factor pseudogene 1 pseudogene pseudogene Approved Xq25 Xq25 MRRFP mitochondrial ribosome recycling factor pseudogene 2008-10-27 2010-02-26 2010-02-26 2010-02-26 286423 ENSG00000224236 OTTHUMG00000022326 NG_005178 MRRFP1 +HGNC:13785 MRS2 MRS2, magnesium transporter protein-coding gene gene with protein product Approved 6p22.3 06p22.3 MRS2L "MRS2-like, magnesium homeostasis factor (S. cerevisiae)|MRS2 magnesium homeostasis factor homolog (S. cerevisiae)" 2000-11-14 2008-01-18 2015-11-27 2016-10-05 57380 ENSG00000124532 OTTHUMG00000014355 uc003neb.5 AF288288 XR_001743533 "CCDS4552|CCDS69055|CCDS69056|CCDS75408" Q9HD23 MGI:2685748 RGD:708529 MRS2 +HGNC:20590 MRS2P1 MRS2 pseudogene 1 pseudogene pseudogene Approved 8q24.13 08q24.13 MRS2LP1 "MRS2-like, magnesium homeostasis factor (S. cerevisiae) pseudogene 1|MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 1" 2005-10-06 2008-01-18 2013-06-10 2014-11-19 100130448 NG_022435 +HGNC:33942 MRS2P2 MRS2 pseudogene 2 pseudogene pseudogene Approved 12q21.1 12q21.1 MRS2 magnesium homeostasis factor homolog (S. cerevisiae) pseudogene 2 2008-01-18 2013-06-10 2014-11-19 729633 NR_024072 +HGNC:7236 MRSD mental retardation-skeletal dysplasia phenotype phenotype only Approved Xq27-q28 Xq27-q28 2001-06-22 2012-10-02 4364 309620 +HGNC:33243 MRT4 mental retardation, non-syndromic, autosomal recessive, 4 phenotype phenotype only Approved 1p21.3-p13.3 01p21.3-p13.3 2007-02-08 2014-01-31 100009675 17309643 611107 +HGNC:39147 MRT8 mental retardation, non-syndromic, autosomal recessive, 8 phenotype phenotype only Approved 10q22 10q22 2010-10-22 2011-02-11 100101423 17120046 +HGNC:39148 MRT9 mental retardation, non-syndromic, autosomal recessive, 9 phenotype phenotype only Approved 14q11.2-q12 14q11.2-q12 2010-10-22 2011-02-11 100101424 17120046 611095 +HGNC:39149 MRT10 mental retardation, non-syndromic, autosomal recessive, 10 phenotype phenotype only Approved 16p12-q12 16p12-q12 2010-10-22 2011-02-11 100101425 17120046 611096 +HGNC:39150 MRT11 mental retardation, non-syndromic, autosomal recessive, 11 phenotype phenotype only Approved 19q13.2-q13.3 19q13.2-q13.3 2010-10-22 2011-02-11 100101426 17120046 611097 +HGNC:39145 MRT17 mental retardation, non-syndromic, autosomal recessive, 17 phenotype phenotype only Approved 4q26-q28 04q26-q28 2010-11-23 2014-01-31 100689013 21629298 +HGNC:39152 MRT18 mental retardation, non-syndromic, autosomal recessive, 18 phenotype phenotype only Approved 6q12-q15 06q12-q15 2010-11-23 2014-01-31 21629298 +HGNC:39153 MRT19 mental retardation, non-syndromic, autosomal recessive, 19 phenotype phenotype only Approved 18p11 18p11 2010-11-23 2013-01-29 100852395 21629298 614343 +HGNC:39154 MRT20 mental retardation, non-syndromic, autosomal recessive, 20 phenotype phenotype only Approved 16p12-q12 16p12-q12 2010-11-23 2013-01-29 21629298 +HGNC:39156 MRT22 mental retardation, non-syndromic, autosomal recessive, 22 phenotype phenotype only Approved 8p22 08p22 2010-11-23 2013-01-29 21629298 +HGNC:39157 MRT23 mental retardation, non-syndromic, autosomal recessive, 23 phenotype phenotype only Approved 11p13-q14 11p13-q14 2010-11-23 2013-01-29 100852398 21629298 614344 +HGNC:39158 MRT24 mental retardation, non-syndromic, autosomal recessive, 24 phenotype phenotype only Approved 6p12 06p12 2010-11-23 2013-01-29 100852402 21629298 614345 +HGNC:39159 MRT25 mental retardation, non-syndromic, autosomal recessive, 25 phenotype phenotype only Approved 12q13-q15 12q13-q15 2010-11-23 2013-01-29 100852403 21629298 614346 +HGNC:39160 MRT26 mental retardation, non-syndromic, autosomal recessive, 26 phenotype phenotype only Approved 14q11-q12 14q11-q12 2010-11-23 2013-01-29 21629298 +HGNC:39161 MRT27 mental retardation, non-syndromic, autosomal recessive, 27 phenotype phenotype only Approved 15q23-q26 15q23-q26 2010-11-23 2015-09-28 100852397 21629298 +HGNC:39162 MRT28 mental retardation, non-syndromic, autosomal recessive, 28 phenotype phenotype only Approved 6q26-q27 06q26-q27 2010-11-23 2013-01-29 100852396 21629298 614347 +HGNC:18477 MRTO4 MRT4 homolog, ribosome maturation factor protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "dJ657E11.4|MRT4" C1orf33 "chromosome 1 open reading frame 33|MRT4, mRNA turnover 4, homolog (S. cerevisiae)|mRNA turnover 4 homolog (S. cerevisiae)" 2002-05-23 2007-01-05 2015-07-02 2015-07-02 51154 ENSG00000053372 OTTHUMG00000002496 uc001bbs.4 AK027569 NM_016183 CCDS191 Q9UKD2 20083226 MGI:1917152 RGD:1311709 MRTO4 +HGNC:7237 MRVI1 murine retrovirus integration site 1 homolog protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "JAW1L|IRAG" "inositol 1,4,5-triphosphate-associated cGMP kinase substrate|IP3R-associated cGMP kinase substrate" 1999-06-10 2016-04-25 10335 ENSG00000072952 OTTHUMG00000165773 uc010rcc.2 AF081249 NM_001098579 "CCDS44538|CCDS44539|CCDS44540|CCDS55745|CCDS55746" Q9Y6F6 10321731 MGI:1338023 RGD:1309828 MRVI1 604673 +HGNC:43434 MRVI1-AS1 MRVI1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 MRVI1 antisense RNA 1 (non-protein coding) 2011-10-28 2012-08-15 2014-02-12 100129827 ENSG00000177112 OTTHUMG00000165772 uc031pza.2 NR_034093 +HGNC:7271 MRX4 mental retardation, X-linked 4 phenotype phenotype only Approved Xp11.22-q21.3 Xp11.22-q21.3 X-linked mental retardation 103 1991-09-10 2007-07-31 4366 "3177465|1605216" +HGNC:7282 MRX5 mental retardation, X-linked 5 phenotype phenotype only Approved Xp11.4-q21.2 Xp11.4-q21.2 X-linked mental retardation 103 1991-09-10 2007-07-31 4369 "1673297|1605216" +HGNC:7293 MRX6 mental retardation, X-linked 6 (Okinawa type) phenotype phenotype only Approved Xq27 Xq27 X-linked mental retardation 103 1991-08-08 2007-07-31 4370 1605216 +HGNC:7304 MRX7 mental retardation, X-linked 7 phenotype phenotype only Approved Xp11.23-q12 Xp11.23-q12 1991-09-10 2007-07-31 4371 1605216 +HGNC:7311 MRX8 mental retardation, X-linked 8 phenotype phenotype only Approved Xq21 Xq21 1991-09-10 2007-07-31 4372 1605227 +HGNC:7240 MRX11 mental retardation, X-linked 11 phenotype phenotype only Approved Xp21.3-p11.22 Xp21.3-p11.22 X-linked mental retardation 103 1991-11-01 2014-01-31 4375 1605216 +HGNC:7243 MRX14 mental retardation, X-linked 14 phenotype phenotype only Approved Xp11.3-q13.2 Xp11.3-q13.2 X-linked mental retardation 103 1993-05-12 2014-01-31 4378 "8026106|17221867" 300062 +HGNC:7244 MRX15 mental retardation, X-linked 15 phenotype phenotype only Approved Xp21.1-p11.22 Xp21.1-p11.22 X-linked mental retardation 103 1993-07-06 1997-10-08 4379 8826458 +HGNC:7246 MRX17 mental retardation, X-linked 17 phenotype phenotype only Approved Xp11.22 Xp11.22 X-linked mental retardation 103 1993-07-12 2014-01-31 4381 "7943039|18252223" +HGNC:7247 MRX18 mental retardation, X-linked 18 phenotype phenotype only Approved Xp21.2-p11.23 Xp21.2-p11.23 X-linked mental retardation 103 1993-07-12 2014-01-31 4382 "7943039|17221867" +HGNC:7250 MRX20 mental retardation, X-linked 20 phenotype phenotype only Approved Xp11-q21 Xp11-q21 X-linked mental retardation 103 1993-09-17 1999-07-06 4384 7573127 300047 +HGNC:7253 MRX23 mental retardation, X-linked 23 phenotype phenotype only Approved Xq23-q24 Xq23-q24 X-linked mental retardation 103 1994-03-18 1996-03-19 4387 8852668 300046 +HGNC:7254 MRX24 mental retardation, X-linked 24 phenotype phenotype only Approved Xp22.3-p22.2 Xp22.3-p22.2 X-linked mental retardation 103 1994-03-22 1997-10-27 4388 7726242 +HGNC:7255 MRX25 mental retardation, X-linked 25 phenotype phenotype only Approved Xq28 Xq28 X-linked mental retardation 103 1994-03-28 4389 1362558 +HGNC:7256 MRX26 mental retardation, X-linked 26 phenotype phenotype only Approved Xp11.3-q21.33 Xp11.3-q21.33 X-linked mental retardation 103 1994-05-30 2014-01-31 4390 "8826459|17221867" +HGNC:7257 MRX27 mental retardation, X-linked 27 phenotype phenotype only Approved Xq24-q26 Xq24-q26 X-linked mental retardation 103 1994-06-01 2011-02-11 4391 8826461 +HGNC:7258 MRX28 mental retardation, X-linked 28 phenotype phenotype only Approved Xq28 Xq28 X-linked mental retardation 103 1994-07-21 1997-07-01 4392 8826462 +HGNC:7262 MRX31 mental retardation, X-linked 31 phenotype phenotype only Approved Xp11.22 Xp11.22 X-linked mental retardation 103 1995-04-24 2014-01-31 4395 "8826460|18252223" +HGNC:7268 MRX37 mental retardation, X-linked 37 phenotype phenotype only Approved Xp22.32-p22.31 Xp22.32-p22.31 X-linked mental retardation 103 1995-09-01 2008-05-14 4402 8826456 +HGNC:7270 MRX39 mental retardation, X-linked 39 phenotype phenotype only Approved X X X-linked mental retardation 103 1995-12-12 2011-02-11 4404 +HGNC:7272 MRX40 mental retardation, X-linked 40 phenotype phenotype only Approved Xq21.1 Xq21.1 X-linked mental retardation 103 1995-12-18 4405 7581391 +HGNC:7274 MRX42 mental retardation, X-linked 42 phenotype phenotype only Approved X X X-linked mental retardation 103 1996-03-12 2011-02-11 4406 11807862 300372 +HGNC:7281 MRX49 mental retardation, X-linked 49 phenotype phenotype only Approved Xp22.3-p22.2 Xp22.3-p22.2 X-linked mental retardation 103 1996-10-26 2011-02-11 4412 9415477 +HGNC:7283 MRX50 mental retardation, X-linked 50 phenotype phenotype only Approved Xp11.3-p11.21 Xp11.3-p11.21 X-linked mental retardation 103 1996-11-13 2011-02-11 4413 9415477 300115 +HGNC:7284 MRX51 mental retardation, X-linked 51 phenotype phenotype only Approved Xp11.3-p11.23 Xp11.3-p11.23 X-linked mental retardation 103 1997-03-19 1999-11-17 4414 10398244 +HGNC:7286 MRX53 mental retardation, X-linked 53 phenotype phenotype only Approved Xq22.2-q24 Xq22.2-q24 X-linked mental retardation 103 1997-06-18 2011-02-11 4416 11337751 300324 +HGNC:7289 MRX56 mental retardation, X-linked 56 phenotype phenotype only Approved X X X-linked mental retardation 103 1997-10-08 2011-02-11 4419 +HGNC:7290 MRX57 mental retardation, X-linked 57 phenotype phenotype only Approved X X X-linked mental retardation 103 1997-10-08 2011-02-11 4420 +HGNC:7295 MRX61 mental retardation, X-linked 61 phenotype phenotype only Approved Xq13.1-q25 Xq13.1-q25 X-linked mental retardation 103 1997-10-16 2014-01-31 4424 17221867 +HGNC:7298 MRX64 mental retardation, X-linked 64 phenotype phenotype only Approved Xq28 Xq28 X-linked mental retardation 103 1998-01-30 1998-01-30 4427 9222958 +HGNC:7299 MRX65 mental retardation, X-linked 65 phenotype phenotype only Approved Xp11.23-q21.32 Xp11.23-q21.32 X-linked mental retardation 103 1998-03-24 2014-01-31 4428 "10398247|17221867" +HGNC:7300 MRX66 mental retardation, X-linked 66 phenotype phenotype only Approved Xq21.33-q23 Xq21.33-q23 1998-11-26 2014-01-31 23700 17221867 +HGNC:7301 MRX67 mental retardation, X-linked 67 phenotype phenotype only Approved Xq13.1-q21.31 Xq13.1-q21.31 1998-11-26 2014-01-31 23699 17221867 +HGNC:7303 MRX69 mental retardation, X-linked 69 phenotype phenotype only Approved Xp11.21-q22.1 Xp11.21-q22.1 1999-06-10 2014-01-31 23697 17221867 +HGNC:7305 MRX70 mental retardation, X-linked 70 phenotype phenotype only Approved Xq23-q25 Xq23-q25 1999-06-10 2014-01-31 23696 17221867 +HGNC:13367 MRX71 mental retardation, X-linked 71 phenotype phenotype only Approved Xq24-q27 Xq24-q27 2006-09-21 2014-01-31 767575 17221867 +HGNC:7307 MRX73 mental retardation, X-linked 73 phenotype phenotype only Approved Xp22.2 Xp22.2 1999-07-09 2001-09-13 23694 11477616 300355 +HGNC:7309 MRX75 mental retardation, X-linked 75 phenotype phenotype only Approved Xq24-q26 Xq24-q26 2000-08-31 2000-08-31 89760 10946355 +HGNC:15824 MRX77 mental retardation, X-linked 77 phenotype phenotype only Approved Xq12-q21.33 Xq12-q21.33 2001-06-13 2008-05-14 93991 12949971 300454 +HGNC:17942 MRX78 mental retardation, X-linked 78 phenotype phenotype only Approved Xp11.4-q21.1 Xp11.4-q21.1 2002-01-07 2011-02-11 170530 12210308 +HGNC:18872 MRX80 mental retardation, X-linked 80 phenotype phenotype only Approved Xq22-q24 Xq22-q24 2003-09-22 2003-09-22 378483 12949969 +HGNC:19301 MRX81 mental retardation, X-linked 81 phenotype phenotype only Approved Xp11.2-q12 Xp11.2-q12 2002-09-30 2011-02-11 266678 12673650 300433 +HGNC:21626 MRX82 mental retardation, X-linked 82 phenotype phenotype only Approved Xq24-q25 Xq24-q25 2003-09-23 2011-02-11 378484 15526294 300518 +HGNC:20228 MRX84 mental retardation, X-linked 84 phenotype phenotype only Approved Xp11.3-q22.3 Xp11.3-q22.3 2003-10-03 2011-02-08 378882 15326629 300505 +HGNC:25212 MRX86 mental retardation, X-linked 86 phenotype phenotype only Approved Xp11.3-q13.1 Xp11.3-q13.1 2005-02-16 2011-02-18 503496 +HGNC:7313 MRXS7 mental retardation, X-linked, syndromic 7 phenotype phenotype only Approved Xp11.3-q22.1 Xp11.3-q22.1 X-linked mental retardation 103 1997-06-18 2014-01-31 4429 10573017 300218 +HGNC:13865 MRXS11 mental retardation, X-linked, syndromic 11 phenotype phenotype only Approved Xq26-q27 Xq26-q27 SMRXS X-linked mental retardation 103 2001-11-13 2001-11-13 50644 10677307 +HGNC:7314 MS multiple sclerosis phenotype phenotype only Approved reserved reserved MS1 1993-10-15 1998-08-20 4397 1383661 +HGNC:7315 MS4A1 membrane spanning 4-domains A1 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "B1|Bp35|MS4A2" CD20 membrane-spanning 4-domains, subfamily A, member 1 "CD molecules|Membrane spanning 4-domains" "471|958" 1989-05-23 2016-01-20 2016-10-12 931 ENSG00000156738 OTTHUMG00000167614 uc001npq.3 M27394 NM_152866 CCDS31570 P11836 2448768 MGI:88321 RGD:1311999 LRG_140|http://www.lrg-sequence.org/LRG/LRG_140 MS4A1 112210 235193 objectId:2628 CD20 +HGNC:7316 MS4A2 membrane spanning 4-domains A2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 MS4A1 Fc fragment of IgE, high affinity I, receptor for; beta polypeptide "FCER1B|IGER|APY" "IgE responsiveness (atopic)|membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for; beta polypeptide)|membrane-spanning 4-domains, subfamily A, member 2" Membrane spanning 4-domains 958 1992-07-09 2016-01-20 2016-10-05 2206 ENSG00000149534 OTTHUMG00000167239 uc001nop.4 M89796 XM_005273846 "CCDS7980|CCDS73292" Q01362 1386024 MGI:95495 RGD:2598 MS4A2 147138 +HGNC:7317 MS4A3 membrane spanning 4-domains A3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 HTM4 CD20L membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) Membrane spanning 4-domains 958 1994-12-14 2016-01-20 2016-01-20 932 ENSG00000149516 OTTHUMG00000167380 uc001nom.4 L35848 XM_011545363 "CCDS31567|CCDS31568|CCDS41651" Q96HJ5 7524084 MGI:2158468 RGD:1310598 MS4A3 606498 +HGNC:13371 MS4A4A membrane spanning 4-domains A4A protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "CD20L1|MS4A7" MS4A4 "membrane-spanning 4-domains, subfamily A, member 4|membrane-spanning 4-domains, subfamily A, member 4A" Membrane spanning 4-domains 958 2000-12-08 2016-01-20 2016-10-05 51338 ENSG00000110079 OTTHUMG00000154949 uc001noz.4 AB013102 XM_017017909 "CCDS7982|CCDS58135" Q96JQ5 "11245982|11401424" MGI:3643932 RGD:1583863 MS4A4A 606547 +HGNC:14284 MS4A4E membrane spanning 4-domains A4E protein-coding gene gene with protein product Approved 11q12.2 11q12.2 membrane-spanning 4-domains, subfamily A, member 4E Membrane spanning 4-domains 958 2002-03-26 2016-01-20 2016-01-20 643680 ENSG00000214787 OTTHUMG00000167354 uc058btl.1 AF354936 XM_003119183 Q96PG1 11486273 RGD:6493207 MS4A4E 608401 +HGNC:13374 MS4A5 membrane spanning 4-domains A5 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 CD20L2 membrane-spanning 4-domains, subfamily A, member 5 Membrane spanning 4-domains 958 2000-12-08 2016-01-20 2016-10-05 64232 ENSG00000166930 OTTHUMG00000167613 uc001npo.3 AB013103 NM_023945 CCDS7987 Q9H3V2 "11245982|11401424" MGI:2670985 RGD:1594968 MS4A5 606499 +HGNC:13375 MS4A6A membrane spanning 4-domains A6A protein-coding gene gene with protein product Approved 11q12.2 11q12.2 CD20L3 MS4A6 membrane-spanning 4-domains, subfamily A, member 6A Membrane spanning 4-domains 958 2000-12-08 2016-01-20 2016-10-05 64231 ENSG00000110077 OTTHUMG00000167241 uc009ymv.4 AB013104 XM_006718658 "CCDS7981|CCDS44615|CCDS44616|CCDS58134|CCDS81568" Q9H2W1 "11245982|11401424" "MGI:1916024|MGI:1917024|MGI:2385644" RGD:1305800 MS4A6A 606548 +HGNC:14285 MS4A6E membrane spanning 4-domains A6E protein-coding gene gene with protein product Approved 11q12 11q12 membrane-spanning 4-domains, subfamily A, member 6E Membrane spanning 4-domains 958 2002-03-26 2016-01-20 2016-01-20 245802 ENSG00000166926 OTTHUMG00000167355 uc001npd.4 AF354931 NM_139249 CCDS7984 Q96DS6 11486273 "MGI:1916024|MGI:1917024|MGI:2385644" MS4A6E 608402 +HGNC:13378 MS4A7 membrane spanning 4-domains A7 protein-coding gene gene with protein product Approved 11q12 11q12 "CD20L4|CFFM4|MS4A8" membrane-spanning 4-domains, subfamily A, member 7 Membrane spanning 4-domains 958 2000-12-08 2016-01-20 2016-01-20 58475 ENSG00000166927 OTTHUMG00000167356 uc001npf.4 AB026043 NM_021201 "CCDS7985|CCDS7986" Q9GZW8 "11245982|11401424" MGI:1918846 RGD:1305549 MS4A7 606502 +HGNC:13380 MS4A8 membrane spanning 4-domains A8 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "MS4A4|CD20L5" MS4A8B "membrane-spanning 4-domains, subfamily A, member 8B|membrane-spanning 4-domains, subfamily A, member 8" Membrane spanning 4-domains 958 2001-04-25 2013-03-01 2016-01-20 2016-10-05 83661 ENSG00000166959 OTTHUMG00000167686 uc001npv.4 AF237905 NM_031457 CCDS7990 Q9BY19 "11245982|11401424" MGI:1927657 RGD:1309035 606549 +HGNC:13368 MS4A10 membrane spanning 4-domains A10 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "CD20L7|MS4A9" membrane-spanning 4-domains, subfamily A, member 10 Membrane spanning 4-domains 958 2005-01-26 2016-01-20 2016-01-20 341116 ENSG00000172689 OTTHUMG00000167689 uc001npz.1 AK122633 NM_206893 CCDS7992 Q96PG2 "11486273|11401424" MGI:1917076 RGD:1307478 MS4A10 608403 +HGNC:13370 MS4A12 membrane spanning 4-domains A12 protein-coding gene gene with protein product Approved 11q12 11q12 "Ms4a10|FLJ20217" membrane-spanning 4-domains, subfamily A, member 12 Membrane spanning 4-domains 958 2002-11-26 2016-01-20 2016-01-20 54860 ENSG00000071203 OTTHUMG00000165364 uc001npr.4 AK000224 XM_011545117 "CCDS7988|CCDS53638" Q9NXJ0 "11401424|11486273" MGI:2685812 RGD:1307162 MS4A12 606550 +HGNC:16674 MS4A13 membrane spanning 4-domains A13 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 membrane-spanning 4-domains, subfamily A, member 13 Membrane spanning 4-domains 958 2005-12-05 2016-01-20 2016-01-20 503497 ENSG00000204979 OTTHUMG00000167615 uc001nps.4 AY324188 NM_001012417 "CCDS31571|CCDS41653|CCDS60801" Q5J8X5 MGI:1920716 RGD:1564175 MS4A13 +HGNC:30706 MS4A14 membrane spanning 4-domains A14 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "NYD-SP21|FLJ32856|DKFZp434H092" MS4A16 "membrane-spanning 4-domains, subfamily A, member 16|membrane-spanning 4-domains, subfamily A, member 14" Membrane spanning 4-domains 958 2004-06-07 2008-04-10 2016-01-20 2016-01-20 84689 ENSG00000166928 OTTHUMG00000167357 uc001npj.4 AY584610 NM_032597 "CCDS31569|CCDS41652|CCDS58136|CCDS73295" Q96JA4 MGI:2686122 RGD:727900 MS4A14 +HGNC:28573 MS4A15 membrane spanning 4-domains A15 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 membrane-spanning 4-domains, subfamily A, member 15 Membrane spanning 4-domains 958 2004-06-07 2016-01-20 2016-01-20 219995 ENSG00000166961 OTTHUMG00000167688 uc001npx.3 AY584608 XM_011544812 "CCDS7991|CCDS44617|CCDS60802" Q8N5U1 MGI:3617853 RGD:1561158 MS4A15 +HGNC:37636 MS4A18 membrane spanning 4-domains A18 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 membrane-spanning 4-domains, subfamily A, member 18 Membrane spanning 4-domains 958 2009-12-01 2016-01-20 2016-01-20 728588 ENSG00000214782 OTTHUMG00000167687 uc001npw.2 XM_001715696 Q3C1V0 MGI:1923252 RGD:2323808 MS4A18 +HGNC:33741 MSANTD1 Myb/SANT DNA binding domain containing 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 LOC345222 C4orf44 "chromosome 4 open reading frame 44|Myb/SANT-like DNA-binding domain containing 1" Myb/SANT domain containing 532 2008-07-14 2012-03-02 2016-03-01 2016-10-05 345222 ENSG00000188981 OTTHUMG00000159977 uc003ggs.4 NM_001012982 "CCDS47003|CCDS82907" Q6ZTZ1 MGI:2684990 RGD:1565796 MSANTD1 +HGNC:26266 MSANTD2 Myb/SANT DNA binding domain containing 2 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 FLJ23342 C11orf61 "chromosome 11 open reading frame 61|Myb/SANT-like DNA-binding domain containing 2" Myb/SANT domain containing 532 2006-03-09 2012-03-02 2016-03-01 2016-03-01 79684 ENSG00000120458 OTTHUMG00000165931 uc001qaz.2 AK026995 NM_024631 "CCDS8454|CCDS73408|CCDS76491|CCDS81641" Q6P1R3 MGI:2384579 RGD:1562840 MSANTD2 +HGNC:39637 MSANTD2P1 Myb/SANT DNA binding domain containing 2 pseudogene 1 pseudogene pseudogene Approved 21q21.2 21q21.2 Myb/SANT-like DNA-binding domain containing 2 pseudogene 1 2012-03-02 2016-03-01 2016-03-01 100130310 ENSG00000231058 OTTHUMG00000078255 NG_021997 PGOHUM00000258121 +HGNC:23370 MSANTD3 Myb/SANT DNA binding domain containing 3 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 MGC17337 C9orf30 "chromosome 9 open reading frame 30|Myb/SANT-like DNA-binding domain containing 3" Myb/SANT domain containing 532 2005-11-22 2012-03-13 2016-03-01 2016-03-01 91283 ENSG00000066697 OTTHUMG00000020365 uc022bla.2 BC008993 NM_080655 "CCDS6749|CCDS56579" Q96H12 MGI:1913915 RGD:1308165 MSANTD3 +HGNC:38838 MSANTD3-TMEFF1 MSANTD3-TMEFF1 readthrough other readthrough Approved 9q31.1 09q31.1 C9orf30-TMEFF1 C9orf30-TMEFF1 readthrough 2011-02-21 2012-03-13 2012-03-13 2014-11-19 100526694 ENSG00000251349 OTTHUMG00000161540 uc064uvb.1 NM_001198812.1 +HGNC:29383 MSANTD4 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding gene gene with protein product Approved 11q22.3 11q22.3 KIAA1826 "KIAA1826|Myb/SANT-like DNA-binding domain containing 4 with coiled-coils" Myb/SANT domain containing 532 2006-02-03 2012-03-13 2016-03-01 2016-10-05 84437 ENSG00000170903 OTTHUMG00000166240 uc001piz.3 AB058729 NM_032424 CCDS31663 Q8NCY6 MGI:1925350 RGD:1565380 +HGNC:7318 MSBP1 minisatellite binding protein 1 other unknown Approved reserved reserved 1995-05-17 2013-03-26 4431 "3243550|1754375" +HGNC:7319 MSBP2 minisatellite binding protein 2 other unknown Approved reserved reserved "minisatellite binding protein 2 (77kD)|minisatellite binding protein 2, 77kDa" 1995-05-17 2015-11-09 2015-11-09 4432 2062643 +HGNC:7321 MSC musculin protein-coding gene gene with protein product Approved 8q13.3 08q13.3 "ABF-1|bHLHa22" activated B-cell factor-1 musculin (activated B-cell factor-1) Basic helix-loop-helix proteins 420 1998-10-30 2010-04-28 2014-11-19 9242 ENSG00000178860 OTTHUMG00000164489 uc003xyx.2 NM_005098 CCDS43746 O60682 "9584154|10198176" MGI:1333884 RGD:1305496 MSC 603628 +HGNC:48724 MSC-AS1 MSC antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q13.3-q21.11 08q13.3-q21.11 2015-03-05 2016-10-11 100132891 ENSG00000235531 OTTHUMG00000164497 NR_033652 +HGNC:7322 MSD microcephaly with spastic diplegia (Paine syndrome) phenotype phenotype only Approved X X 2001-06-22 2014-01-30 4434 4274173 311400 +HGNC:14907 MSGN1 mesogenin 1 protein-coding gene gene with protein product Approved 2p24.2 02p24.2 pMesogenin1 paraxial mesogenin 2005-11-14 2014-11-19 343930 ENSG00000151379 OTTHUMG00000159089 uc010yjt.3 XM_292850 CCDS42657 A6NI15 10837126 MGI:1860483 RGD:1587516 MSGN1 612209 +HGNC:7325 MSH2 mutS homolog 2 protein-coding gene gene with protein product Approved 2p21-p16.3 02p21-p16.3 "HNPCC|HNPCC1" COCA1 "mutS (E. coli) homolog 2 (colon cancer, nonpolyposis type 1)|mutS homolog 2, colon cancer, nonpolyposis type 1 (E. coli)" MutS homologs 1026 1993-07-28 2013-09-12 2016-10-12 4436 ENSG00000095002 OTTHUMG00000128861 uc002rvy.3 U03911 XM_005264332 "CCDS1834|CCDS58709" P43246 "8484120|9843200" MGI:101816 RGD:620786 "Hereditary Non-Polyposis Colorectal Cancer, HNPCC|http://www.insight-group.org/|Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=MSH2|MSH2 database at LOVD-China|http://genomed.org/LOVD/HNPCC/home.php?select_db=MSH2|LOVD - Leiden Open Variation Database|http://proteomics.bio21.unimelb.edu.au/lovd/genes/MSH2|LRG_218|http://www.lrg-sequence.org/LRG/LRG_218" MSH2 609309 123487 +HGNC:7326 MSH3 mutS homolog 3 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "DUP|MRP1" "Divergent upstream protein|Mismatch repair protein 1" "mutS (E. coli) homolog 3|mutS homolog 3 (E. coli)" MutS homologs 1026 1995-09-28 2013-09-12 2015-06-23 4437 ENSG00000113318 OTTHUMG00000162540 uc003kgz.5 U61981 NM_002439 CCDS34195 P20585 MGI:109519 RGD:1563954 MSH3 600887 +HGNC:7327 MSH4 mutS homolog 4 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "mutS (E. coli) homolog 4|mutS homolog 4 (E. coli)" MutS homologs 1026 1997-08-22 2013-09-12 2016-10-05 4438 ENSG00000057468 OTTHUMG00000009788 uc001dhd.3 U89293 NM_002440 CCDS670 O15457 9299235 MGI:1860077 RGD:1309190 MSH4 602105 +HGNC:7328 MSH5 mutS homolog 5 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "mutS (E. coli) homolog 5|mutS homolog 5 (E. coli)" MutS homologs 1026 1998-03-10 2013-09-12 2016-10-05 4439 ENSG00000204410 OTTHUMG00000167551 uc003nww.3 AF070071 NM_002441 "CCDS34409|CCDS34410|CCDS4720" O43196 "9740671|9787078|17977839" MGI:1329021 RGD:1303008 MSH5 603382 +HGNC:41994 MSH5-SAPCD1 MSH5-SAPCD1 readthrough (NMD candidate) other readthrough Approved 6p21.33 06p21.33 MSH5-C6orf26 MSH5-C6orf26 readthrough (non-protein coding) 2011-05-31 2011-12-13 2013-05-09 2014-11-19 100532732 ENSG00000255152 OTTHUMG00000031139 uc063uin.1 NR_037846.1 +HGNC:7329 MSH6 mutS homolog 6 protein-coding gene gene with protein product Approved 2p16.3 02p16.3 GTBP "mutS (E. coli) homolog 6|mutS homolog 6 (E. coli)" "MutS homologs|PWWP domain containing" "1026|1147" 1995-08-29 2013-09-12 2016-10-12 2956 ENSG00000116062 OTTHUMG00000129129 uc002rwd.5 U54777 NM_000179 "CCDS1836|CCDS62906|CCDS62907" P52701 7604266 MGI:1343961 RGD:2322311 "Hereditary Non-Polyposis Colorectal Cancer, HNPCC|http://www.insight-group.org/|Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=MSH6|MSH6 database at LOVD-China|http://genomed.org/LOVD/HNPCC/home.php?select_db=MSH6|LRG_219|http://www.lrg-sequence.org/LRG/LRG_219" MSH6 600678 123492 +HGNC:7330 MSI1 musashi RNA binding protein 1 protein-coding gene gene with protein product Approved 12q24 12q24 "Musashi (Drosophila) homolog 1|musashi homolog 1 (Drosophila)" RNA binding motif containing 725 1998-05-07 2015-11-05 2015-11-05 4440 ENSG00000135097 OTTHUMG00000169344 uc001tye.2 AB012851 NM_002442 CCDS9196 O43347 9790759 MGI:107376 RGD:628778 MSI1 603328 +HGNC:18585 MSI2 musashi RNA binding protein 2 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 musashi homolog 2 (Drosophila) RNA binding motif containing 725 2002-04-29 2015-11-05 2015-11-05 124540 ENSG00000153944 OTTHUMG00000178398 uc002iuz.2 BC001526 NM_138962 "CCDS11596|CCDS11597|CCDS82168" Q96DH6 11588182 MGI:1923876 RGD:1560397 MSI2 607897 +HGNC:7331 MSK1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7342 MSK2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7353 MSK3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7364 MSK4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7367 MSK7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7369 MSK9 antigen identified by monoclonal antibody K15 other unknown Approved 3pter-p14 03pter-p14 2001-06-22 2015-03-09 4447 6593709 +HGNC:7332 MSK10 antigen identified by monoclonal antibody AJ425 other unknown Approved 3pter-p14 03pter-p14 2001-06-22 2013-03-26 4448 6593709 +HGNC:7333 MSK11 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7335 MSK13 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7336 MSK14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7337 MSK15 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7339 MSK17 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7341 MSK19 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7343 MSK20 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7345 MSK22 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7346 MSK23 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7347 MSK24 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7348 MSK25 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7349 MSK26 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7350 MSK27 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7351 MSK28 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7352 MSK29 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7354 MSK30 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7355 MSK31 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7356 MSK32 antigen identified by monoclonal antibody K66 other unknown Approved 3pter-p14 03pter-p14 2001-06-22 2013-03-26 4467 3456173 +HGNC:7357 MSK33 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7358 MSK34 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7359 MSK35 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7360 MSK36 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7361 MSK37 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7362 MSK38 antigen identified by monoclonal antibody O5 other unknown Approved 20 20 2001-06-22 2013-03-27 4473 +HGNC:7363 MSK39 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7365 MSK40 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7366 MSK41 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:27905 MSL1 male specific lethal 1 homolog protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "hMSL1|MSL-1|DKFZp686P24239" male-specific lethal 1 homolog (Drosophila) 2008-10-29 2016-04-04 2016-04-04 339287 ENSG00000188895 OTTHUMG00000179629 uc002hua.6 NM_001012241 CCDS45670 Q68DK7 "16227571|16543150" MGI:1921276 RGD:1564778 MSL1 614801 +HGNC:25544 MSL2 male-specific lethal 2 homolog (Drosophila) protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "FLJ10546|KIAA1585|msl-2" male-specific lethal-2 homolog (Drosophila) "RNF184|MSL2L1" "ring finger protein 184|male-specific lethal 2-like 1 (Drosophila)" Ring finger proteins 58 2005-01-26 2008-10-29 2008-10-29 2016-10-05 55167 ENSG00000174579 OTTHUMG00000159793 uc003eqx.2 AK001408 NM_018133 "CCDS33861|CCDS46922" Q9HCI7 "16227571|16543150" MGI:1925103 RGD:1310355 MSL2 614802 +HGNC:7370 MSL3 male-specific lethal 3 homolog (Drosophila) protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 MSL3L1 "male-specific lethal-3 (Drosophila)-like 1|male-specific lethal 3-like 1 (Drosophila)" 1999-08-09 2008-10-29 2008-10-29 2016-10-05 10943 ENSG00000005302 OTTHUMG00000021132 uc004cuw.3 AF117065 NM_006800 "CCDS14147|CCDS14148|CCDS14149|CCDS55369|CCDS65213" Q8N5Y2 "10395802|10908644" MGI:1341851 RGD:1549763 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MSL3 MSL3 300609 +HGNC:17837 MSL3P1 male-specific lethal 3 homolog (Drosophila) pseudogene 1 pseudogene pseudogene Approved 2q37.1 02q37.1 MSL3L2 male-specific lethal 3-like 2 (Drosophila) 2002-01-29 2011-03-21 2011-03-21 2011-03-21 151507 ENSG00000224287 OTTHUMG00000059126 BI831020 NR_024322 P0C860 RGD:1308699 PGOHUM00000240561 +HGNC:7371 MSLN mesothelin protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "CAK1|MPF" 1999-11-22 2015-08-25 10232 ENSG00000102854 OTTHUMG00000047992 uc002cjt.2 U40434 NM_001177355 "CCDS32356|CCDS45370" Q13421 "7665620|8552591" MGI:1888992 RGD:69333 MSLN 601051 +HGNC:14170 MSLNL mesothelin-like other unknown Approved 16p13.3 16p13.3 MPFL C16orf37 chromosome 16 open reading frame 37 2000-12-21 2008-07-04 2008-07-04 2016-09-27 401827 ENSG00000162006 OTTHUMG00000168780 uc059orz.1 NM_001025190 Q96KJ4 22265842 RGD:1561732 MSLNL +HGNC:7372 MSMB microseminoprotein beta protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "PSP-94|PSP57|PSP94|IGBF|MSP|MSPB|PN44|PRPS|PSP" beta-microseminoprotein microseminoprotein, beta- 1991-08-07 2016-06-29 2016-10-05 4477 ENSG00000263639 OTTHUMG00000188315 uc001jiq.5 BC005257 "NM_002443|NM_138634" "CCDS73095|CCDS73096" P08118 1783399 MGI:97166 RGD:3113 MSMB 157145 233066 +HGNC:10545 MSMO1 methylsterol monooxygenase 1 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 "DESP4|ERG25" SC4MOL sterol-C4-methyl oxidase-like Fatty acid hydroxylase domain containing 552 1997-02-28 2011-09-01 2011-09-01 2016-10-05 6307 ENSG00000052802 OTTHUMG00000161126 uc003ire.4 U93162 NM_006745 "CCDS3809|CCDS43280" Q15800 8663358 MGI:1913484 RGD:620281 607545 1.14.13.72 +HGNC:29663 MSMP microseminoprotein, prostate associated protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "PC-3|PSMP" 2009-02-27 2015-08-25 692094 ENSG00000215183 OTTHUMG00000019882 uc003zyb.3 DQ012170 NM_001044264 CCDS43797 Q1L6U9 17338636 MGI:3652339 RGD:2323536 MSMP 612191 +HGNC:7373 MSN moesin protein-coding gene gene with protein product Approved Xq12 Xq12 FERM domain containing 1293 1993-02-05 2016-10-05 4478 ENSG00000147065 OTTHUMG00000021723 uc064zqh.1 M69066 NM_002444 CCDS14382 P26038 "1924289|7628534" MGI:97167 RGD:621260 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MSN MSN 309845 +HGNC:7375 MSNL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:7374 MSNP1 moesin pseudogene 1 pseudogene pseudogene Approved 5p14.1 05p14.1 MSNL1 moesin-like 1 1993-07-15 2010-10-20 2010-10-20 2014-11-19 4479 ENSG00000251593 OTTHUMG00000161961 NG_003032 8188263 PGOHUM00000235534 +HGNC:7376 MSR1 macrophage scavenger receptor 1 protein-coding gene gene with protein product Approved 8p22 08p22 "SCARA1|CD204" "CD molecules|Scavenger receptors" "471|1253" 1991-08-07 2015-09-03 4481 ENSG00000038945 OTTHUMG00000094809 uc003wwz.4 D13263 NM_138715 "CCDS5995|CCDS5996|CCDS5997" P21757 2251254 MGI:98257 RGD:1564316 MSR1 153622 297634 CD204 +HGNC:7377 MSRA methionine sulfoxide reductase A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 1996-12-19 2015-08-25 4482 ENSG00000175806 OTTHUMG00000090517 uc003wsx.4 BC054033 NM_012331 "CCDS5975|CCDS47798|CCDS47799|CCDS56522" Q9UJ68 10452521 MGI:106916 RGD:70979 MSRA 601250 1.8.4.11 +HGNC:14133 MSRB1 methionine sulfoxide reductase B1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "SelR|SepR|SelX" selenoprotein R SEPX1 selenoprotein X, 1 Selenoproteins 890 2000-12-21 2012-03-01 2012-03-01 2016-09-23 51734 ENSG00000198736 OTTHUMG00000129143 uc021tam.2 AF166124 NM_016332 CCDS42100 Q9NZV6 "10608886|20634897" MGI:1351642 RGD:1583243 606216 +HGNC:43985 MSRB1P1 methionine sulfoxide reductase B1 pseudogene 1 pseudogene pseudogene Approved 19q13.2 19q13.2 2012-05-22 2012-05-22 441849 ENSG00000213926 OTTHUMG00000168117 NG_030284 PGOHUM00000259330 +HGNC:17061 MSRB2 methionine sulfoxide reductase B2 protein-coding gene gene with protein product Approved 10p12.2 10p12.2 "PILB|CGI-131|CBS1|CBS-1" MSRB methionine sulfoxide reductase B 2004-02-03 2004-12-07 2004-12-06 2016-10-05 22921 ENSG00000148450 OTTHUMG00000017812 uc001iro.4 AF122004 NM_012228 CCDS41495 Q9Y3D2 "8749308|10375640" MGI:1923717 RGD:1306026 MSRB2 613782 +HGNC:27375 MSRB3 methionine sulfoxide reductase B3 protein-coding gene gene with protein product Approved 12q14.3 12q14.3 "FLJ36866|DKFZp686C1178" DFNB74 deafness, autosomal recessive 74 2004-12-06 2014-11-19 253827 ENSG00000174099 OTTHUMG00000168866 uc001ssm.3 BX640871 NM_198080 "CCDS8973|CCDS31853" Q8IXL7 21185009 MGI:2443538 RGD:1596851 MSRB3 613719 258532 +HGNC:21000 MSS51 MSS51 mitochondrial translational activator protein-coding gene gene with protein product Approved 10q22.2 10q22.2 FLJ39565 ZMYND17 "zinc finger, MYND-type containing 17|MSS51 mitochondrial translational activator homolog (S. cerevisiae)" Zinc fingers MYND-type 87 2003-11-20 2012-02-24 2013-01-10 2016-10-05 118490 ENSG00000166343 OTTHUMG00000018464 uc001jud.4 AK096884 NM_178451 CCDS31221 Q4VC12 19710419 MGI:1922093 RGD:1309408 614773 +HGNC:7380 MST1 macrophage stimulating 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "MSP|NF15S2" "D3F15S2|HGFL|DNF15S2" hepatocyte growth factor-like 1992-08-24 2015-02-23 2016-10-05 4485 ENSG00000173531 OTTHUMG00000155918 uc003cxg.4 M74178 NM_020998 CCDS33757 P26927 "2902784|8393443" MGI:96080 RGD:3114 MST1 142408 367104 S01.975 +HGNC:7390 MST1L macrophage stimulating 1 like other unknown Approved 1p36.13 01p36.13 "D1F15S1A|MSPL7|MSPL-7" "MSTP7|MSTP9|MST1P9" "macrophage stimulating, pseudogene 7|macrophage stimulating, pseudogene 9|macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 9" 1999-09-09 2012-11-09 2016-06-27 2016-10-05 11223 ENSG00000186715 OTTHUMG00000002578 "U28055|AF083416" NM_001271733 Q2TV78 10728827 S01.933 +HGNC:7383 MST1P2 macrophage stimulating 1 pseudogene 2 pseudogene pseudogene Approved 1p36.13 01p36.13 "MSPL2|MSPL-2" MSTP2 "macrophage stimulating, pseudogene 2|macrophage stimulating 1 (hepatocyte growth factor-like) pseudogene 2" 1999-09-09 2010-01-08 2016-06-27 2016-06-27 11209 ENSG00000186301 OTTHUMG00000057487 AF083411 NR_027504 10585770 PGOHUM00000251108 +HGNC:7381 MST1R macrophage stimulating 1 receptor protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CDw136|CD136" c-met-related tyrosine kinase "RON|PTK8" PTK8 protein tyrosine kinase 8 "Receptor Tyrosine Kinases|CD molecules" "321|471" 1993-12-15 2015-02-23 2016-10-05 4486 ENSG00000164078 OTTHUMG00000156709 uc003cxy.5 X70040 XM_005265170 "CCDS2807|CCDS58833|CCDS82777" Q04912 8386824 MGI:99614 RGD:1306465 MST1R 600168 objectId:1816 CD136 +HGNC:4223 MSTN myostatin protein-coding gene gene with protein product Approved 2q32.2 02q32.2 GDF8 growth differentiation factor 8 1997-09-12 2007-06-21 2007-06-21 2016-10-12 2660 ENSG00000138379 OTTHUMG00000132663 uc002urp.4 AF019627 NM_005259 CCDS2303 O14793 "9288100|10610713|17003236" MGI:95691 RGD:3115 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=MSTN|LRG_200|http://www.lrg-sequence.org/LRG/LRG_200" MSTN 601788 279640 +HGNC:29678 MSTO1 misato 1, mitochondrial distribution and morphology regulator protein-coding gene gene with protein product Approved 1q22 01q22 "FLJ10504|LST005|MST|misato" misato homolog 1 (Drosophila) 2005-07-19 2013-08-21 2015-08-25 55154 ENSG00000125459 OTTHUMG00000014014 uc001fky.5 BX537684 NM_018116 CCDS1114 Q9BUK6 "16545939|17349998" MGI:2385175 RGD:1306110 MSTO1 +HGNC:26329 MSTO2P misato family member 2, pseudogene pseudogene pseudogene Approved 1q22 01q22 MSTO2 "misato homolog 2 (Drosophila)|misato homolog 2 pseudogene" 2006-03-22 2008-06-06 2013-08-21 2014-11-18 100129405 ENSG00000203761 OTTHUMG00000035441 XR_039412 16545939 PGOHUM00000251137 +HGNC:7391 MSX1 msh homeobox 1 protein-coding gene gene with protein product Approved 4p16.2 04p16.2 "HYD1|OFC5" HOX7 "msh (Drosophila) homeo box homolog 1 (formerly homeo box 7)|msh homeobox homolog 1 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 1993-05-26 2006-11-21 2014-11-18 4487 ENSG00000163132 OTTHUMG00000090335 uc003gif.4 M97676 NM_002448 CCDS3378 P28360 "1685479|1973146" MGI:97168 RGD:620929 MSX1 142983 8467 123495 +HGNC:7392 MSX2 msh homeobox 2 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "CRS2|FPP|HOX8|MSH|PFM" craniosynostosis, type 2 PFM1 "msh (Drosophila) homeo box homolog 2|parietal foramina 1|msh homeobox homolog 2 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 1993-05-26 2006-11-21 2014-11-19 4488 ENSG00000120149 OTTHUMG00000130556 uc003mcy.4 D26145 XM_017009489 CCDS4392 P35548 "8668339|8786091" MGI:97169 RGD:3116 MSX2 123101 8468 123500 +HGNC:24976 MSX2P1 msh homeobox 2 pseudogene 1 pseudogene pseudogene Approved 17q23.2 17q23.2 "HSHPX5|HPX5" MSX2P msh homeobox 2 pseudogene NKL subclass homeoboxes and pseudogenes 519 2006-11-21 2007-07-27 2007-07-27 2011-06-20 55545 ENSG00000229590 OTTHUMG00000178800 NR_002307 7518789 8383 +HGNC:7414 MT-ATP6 mitochondrially encoded ATP synthase 6 protein-coding gene gene with protein product Approved mitochondria mitochondria "ATP6|ATPase-6|Su6m" "MTATP6|RP" "ATP synthase 6|spicular retinitis pigmentosa with dementia, seizures, ataxia, proximal muscle weakness and sensory deficit" "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1989-10-12 2005-02-16 2005-02-15 2014-11-18 4508 ENSG00000198899 uc064xpf.1 YP_003024031 P00846 7219534 MGI:99927 RGD:621239 MT-ATP6 516060 123508 objectId:801 +HGNC:7415 MT-ATP8 mitochondrially encoded ATP synthase 8 protein-coding gene gene with protein product Approved mitochondria mitochondria "ATP8|A6L" MTATP8 ATP synthase 8 "F-type ATPases|Mitochondrial complex V: ATP synthase subunits" "416|644" 1989-10-12 2005-02-16 2005-02-15 2015-09-03 4509 ENSG00000228253 uc064xpe.1 YP_003024030 P03928 MGI:99926 RGD:621240 MT-ATP8 516070 159773 objectId:809 +HGNC:7419 MT-CO1 mitochondrially encoded cytochrome c oxidase I protein-coding gene gene with protein product Approved mitochondria mitochondria "COX1|COI" MTCO1 cytochrome c oxidase I Mitochondrial complex IV: cytochrome c oxidase subunits 643 1989-10-12 2005-02-16 2005-02-15 2015-08-25 4512 ENSG00000198804 uc031tga.3 YP_003024028 P00395 7219534 MGI:102504 RGD:621871 MT-CO1 516030 123512 +HGNC:7421 MT-CO2 mitochondrially encoded cytochrome c oxidase II protein-coding gene gene with protein product Approved mitochondria mitochondria "COX2|CO2" MTCO2 cytochrome c oxidase II Mitochondrial complex IV: cytochrome c oxidase subunits 643 1989-10-12 2005-02-16 2005-02-15 2015-08-25 4513 ENSG00000198712 uc064xpd.1 YP_003024029 P00403 "1712754|1989603" MGI:102503 RGD:621872 MT-CO2 516040 123516 +HGNC:7422 MT-CO3 mitochondrially encoded cytochrome c oxidase III protein-coding gene gene with protein product Approved mitochondria mitochondria "COX3|COIII|CO3" MTCO3 cytochrome c oxidase III Mitochondrial complex IV: cytochrome c oxidase subunits 643 1989-10-12 2005-02-16 2005-02-15 2015-08-25 4514 ENSG00000198938 uc064xpg.1 YP_003024032 P00414 MGI:102502 RGD:621873 MT-CO3 516050 123520 +HGNC:7427 MT-CYB mitochondrially encoded cytochrome b protein-coding gene gene with protein product Approved mitochondria mitochondria "COB|CYTB|UQCR3" MTCYB cytochrome b Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 1989-10-11 2005-02-16 2005-02-15 2012-11-16 4519 ENSG00000198727 uc033dmn.2 YP_003024038 P00156 MGI:102501 RGD:620081 MT-CYB 516020 123524 +HGNC:50279 MT-LIPCAR mitochondrially encoded long non-coding cardiac associated RNA non-coding RNA RNA, long non-coding Approved mitochondria mitochondria "uc022bqs.1|LIPCAR" long intergenic non coding RNA predicting cardiac remodeling and survival Long non-coding RNAs 788 2014-06-27 2014-06-27 2016-01-29 103504742 JA760602 24663402 +HGNC:7455 MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 protein-coding gene gene with protein product Approved mitochondria mitochondria "ND1|NAD1" "complex I ND1 subunit|NADH-ubiquinone oxidoreductase chain 1" MTND1 "NADH dehydrogenase 1|mitochondrially encoded NADH dehydrogenase 1" NADH:ubiquinone oxidoreductase core subunits 1149 1989-10-12 2005-02-16 2015-11-20 2015-11-20 4535 ENSG00000198888 uc064xou.1 YP_003024026 P03886 MGI:101787 RGD:620555 MT-ND1 516000 123537 1.6.5.3 +HGNC:7456 MT-ND2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 protein-coding gene gene with protein product Approved mitochondria mitochondria "ND2|NAD2" "complex I ND2 subunit|NADH-ubiquinone oxidoreductase chain 2" MTND2 "NADH dehydrogenase 2|mitochondrially encoded NADH dehydrogenase 2" NADH:ubiquinone oxidoreductase core subunits 1149 1989-10-12 2005-02-16 2015-11-20 2015-11-20 4536 ENSG00000198763 uc064xox.1 YP_003024027 P03891 MGI:102500 RGD:620556 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ MT-ND2 516001 123542 1.6.5.3 +HGNC:7458 MT-ND3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 protein-coding gene gene with protein product Approved mitochondria mitochondria "ND3|NAD3" "complex I ND3 subunit|NADH-ubiquinone oxidoreductase chain 3" MTND3 "NADH dehydrogenase 3|mitochondrially encoded NADH dehydrogenase 3" NADH:ubiquinone oxidoreductase core subunits 1149 1989-10-12 2005-02-16 2015-11-20 2015-11-20 4537 ENSG00000198840 uc022bqu.3 YP_003024033 P03897 MGI:102499 RGD:620557 MT-ND3 516002 123547 1.6.5.3 +HGNC:7459 MT-ND4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 protein-coding gene gene with protein product Approved mitochondria mitochondria "ND4|NAD4" "complex I ND4 subunit|NADH-ubiquinone oxidoreductase chain 4" "MTND4|LHON" "NADH dehydrogenase 4|Leber optic neuropathy|mitochondrially encoded NADH dehydrogenase 4" NADH:ubiquinone oxidoreductase core subunits 1149 1989-06-03 2005-02-16 2015-11-20 2015-11-20 4538 ENSG00000198886 uc064xpj.1 YP_003024035 P03905 8103501 MGI:102498 RGD:620559 MT-ND4 516003 123552 1.6.5.3 +HGNC:7460 MT-ND4L mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L protein-coding gene gene with protein product Approved mitochondria mitochondria "ND4L|NAD4L" "complex I ND4L subunit|NADH-ubiquinone oxidoreductase chain 4L" MTND4L "NADH dehydrogenase 4L|mitochondrially encoded NADH dehydrogenase 4L" NADH:ubiquinone oxidoreductase core subunits 1149 1989-10-12 2005-02-16 2015-11-20 2015-11-20 4539 ENSG00000212907 uc033dmm.2 YP_003024034 P03901 MGI:102497 RGD:620494 MT-ND4L 516004 123557 1.6.5.3 +HGNC:7461 MT-ND5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 protein-coding gene gene with protein product Approved mitochondria mitochondria "ND5|NAD5" "complex I ND5 subunit|NADH-ubiquinone oxidoreductase chain 5" MTND5 "NADH dehydrogenase 5|mitochondrially encoded NADH dehydrogenase 5" NADH:ubiquinone oxidoreductase core subunits 1149 1989-10-11 2005-02-16 2015-11-20 2015-11-20 4540 ENSG00000198786 uc004cox.6 YP_003024036 P03915 MGI:102496 RGD:620560 MT-ND5 516005 123562 1.6.5.3 +HGNC:7462 MT-ND6 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 protein-coding gene gene with protein product Approved mitochondria mitochondria "NAD6|ND6" "complex I ND6 subunit|NADH-ubiquinone oxidoreductase chain 6" MTND6 "NADH dehydrogenase 6|mitochondrially encoded NADH dehydrogenase 6" NADH:ubiquinone oxidoreductase core subunits 1149 1989-10-11 2005-02-16 2015-11-20 2015-11-20 4541 ENSG00000198695 uc064xpm.1 YP_003024037 P03923 MGI:102495 RGD:620561 MT-ND6 516006 123567 1.6.5.3 +HGNC:7470 MT-RNR1 mitochondrially encoded 12S RNA non-coding RNA RNA, ribosomal Approved mitochondria mitochondria MOTS-c MTRNR1 12S RNA Ribosomal RNAs 848 1989-10-12 2005-02-16 2012-05-11 2016-02-09 4549 ENSG00000211459 uc022bqo.3 A0A0C5B5G6 25738459 MGI:102493 561000 138902 +HGNC:7471 MT-RNR2 mitochondrially encoded 16S RNA non-coding RNA RNA, ribosomal Approved mitochondria mitochondria HN "humanin|formyl-humanin" MTRNR2 "Endogenous ligands|Ribosomal RNAs" "542|848" 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4550 ENSG00000210082 uc033dmk.2 NC_012920 Q8IVG9 "12009529|12445508" MGI:102492 561010 400453 +HGNC:7475 MT-TA mitochondrially encoded tRNA alanine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnA MTTA tRNA alanine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4553 ENSG00000210127 uc022bqq.2 MGI:102491 590000 7 +HGNC:7477 MT-TC mitochondrially encoded tRNA cysteine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnC MTTC tRNA cysteine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4511 ENSG00000210140 uc064xoz.1 MGI:102490 590020 12 +HGNC:7478 MT-TD mitochondrially encoded tRNA aspartic acid non-coding RNA RNA, transfer Approved mitochondria mitochondria trnD MTTD tRNA aspartic acid Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4555 ENSG00000210154 uc064xpc.1 MGI:102489 590015 11 +HGNC:7479 MT-TE mitochondrially encoded tRNA glutamic acid non-coding RNA RNA, transfer Approved mitochondria mitochondria trnE MTTE tRNA glutamic acid Mitochondrially encoded tRNAs 843 1989-10-11 2005-02-16 2005-02-15 2015-09-28 4556 ENSG00000210194 uc022bqv.3 MGI:102488 590025 140514 13 +HGNC:7481 MT-TF mitochondrially encoded tRNA phenylalanine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnF MTTF tRNA phenylalanine Mitochondrially encoded tRNAs 843 1989-10-11 2005-02-16 2005-02-15 2015-09-28 4558 ENSG00000210049 uc064xos.1 MGI:102487 590070 167909 20 +HGNC:7486 MT-TG mitochondrially encoded tRNA glycine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnG MTTG tRNA glycine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4563 ENSG00000210164 uc064xph.1 MGI:102486 590035 188805 27 +HGNC:7487 MT-TH mitochondrially encoded tRNA histidine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnH MTTH tRNA histidine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4564 ENSG00000210176 uc064xpk.1 MGI:102485 590040 166766 15 +HGNC:7488 MT-TI mitochondrially encoded tRNA isoleucine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnI MTTI tRNA isoleucine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4565 ENSG00000210100 uc064xov.1 MGI:102484 590045 160303 16 +HGNC:7489 MT-TK mitochondrially encoded tRNA lysine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnK "MERRF|MTTK" tRNA lysine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4566 ENSG00000210156 uc011mfi.3 "2112427|2124116" MGI:102483 590060 138900 28 +HGNC:7490 MT-TL1 mitochondrially encoded tRNA leucine 1 (UUA/G) non-coding RNA RNA, transfer Approved mitochondria mitochondria TRNL1 MTTL1 tRNA leucine 1 (UUA/G) Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4567 ENSG00000209082 uc064xot.1 MGI:102482 590050 138895 18 +HGNC:7491 MT-TL2 mitochondrially encoded tRNA leucine 2 (CUN) non-coding RNA RNA, transfer Approved mitochondria mitochondria TRNL2 MTTL2 tRNA leucine 2 (CUN) Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4568 ENSG00000210191 uc064xpl.1 MGI:102481 590055 183924 17 +HGNC:7492 MT-TM mitochondrially encoded tRNA methionine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnM MTTM tRNA methionine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4569 ENSG00000210112 uc064xow.1 MGI:102480 590065 19 +HGNC:7493 MT-TN mitochondrially encoded tRNA asparagine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnN MTTN tRNA asparagine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4570 ENSG00000210135 uc022bqr.2 MGI:102479 590010 364766 10 +HGNC:7494 MT-TP mitochondrially encoded tRNA proline non-coding RNA RNA, transfer Approved mitochondria mitochondria trnP MTTP tRNA proline Mitochondrially encoded tRNAs 843 1989-10-11 2005-02-16 2005-02-15 2015-09-28 4571 ENSG00000210196 uc022bqx.2 MGI:102478 590075 205934 21 +HGNC:7495 MT-TQ mitochondrially encoded tRNA glutamine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnQ MTTQ tRNA glutamine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4572 ENSG00000210107 uc033dml.1 MGI:102477 590030 138906 14 +HGNC:7496 MT-TR mitochondrially encoded tRNA arginine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnR MTTR tRNA arginine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4573 ENSG00000210174 uc064xpi.1 MGI:102476 590005 9 +HGNC:7497 MT-TS1 mitochondrially encoded tRNA serine 1 (UCN) non-coding RNA RNA, transfer Approved mitochondria mitochondria TRNS1 MTTS1 tRNA serine 1 (UCN) Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4574 ENSG00000210151 uc064xpb.1 MGI:102475 590080 167901 23 +HGNC:7498 MT-TS2 mitochondrially encoded tRNA serine 2 (AGU/C) non-coding RNA RNA, transfer Approved mitochondria mitochondria "TRNS2|RP8" MTTS2 tRNA serine 2 (AGU/C) Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4575 ENSG00000210184 uc004cow.3 MGI:102474 Mutations of the Second Mitochondrial Serine tRNA Gene|http://www.retina-international.org/files/sci-news/mttsmut.htm 590085 167905 22 +HGNC:7499 MT-TT mitochondrially encoded tRNA threonine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnT "MTTT|LIMM" "tRNA threonine|lethal infantile mitochondrial myopathy" Mitochondrially encoded tRNAs 843 1989-10-11 2005-02-16 2005-02-15 2015-09-28 4576 ENSG00000210195 uc064xpn.1 MGI:102473 590090 328936 24 +HGNC:7500 MT-TV mitochondrially encoded tRNA valine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnV MTTV tRNA valine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4577 ENSG00000210077 uc004cor.2 MGI:102472 590105 267449 8 +HGNC:7501 MT-TW mitochondrially encoded tRNA tryptophan non-coding RNA RNA, transfer Approved mitochondria mitochondria trnW MTTW tRNA tryptophan Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4578 ENSG00000210117 uc064xoy.1 MGI:102471 590095 160307 25 +HGNC:7502 MT-TY mitochondrially encoded tRNA tyrosine non-coding RNA RNA, transfer Approved mitochondria mitochondria trnY MTTY tRNA tyrosine Mitochondrially encoded tRNAs 843 1989-10-12 2005-02-16 2005-02-15 2015-09-28 4579 ENSG00000210144 uc064xpa.1 MGI:102470 590100 26 +HGNC:7393 MT1A metallothionein 1A protein-coding gene gene with protein product Approved 16q13 16q13 "MT1|MT1S" metallothionein 1S Metallothioneins 638 2001-06-22 2007-03-02 2015-09-04 4489 ENSG00000205362 OTTHUMG00000176919 uc059umh.1 BC029475 NM_005946 CCDS32454 P04731 "6089206|6327055" MGI:97171 RGD:3117 MT1A 156350 +HGNC:7394 MT1B metallothionein 1B protein-coding gene gene with protein product Approved 16q13 16q13 "MT1|MT1Q" metallothionein 1Q Metallothioneins 638 1990-09-10 2007-03-02 2015-09-04 4490 ENSG00000169688 OTTHUMG00000133277 uc002ejs.3 AY168638 NM_005947 CCDS10765 P07438 "6089206|3785191" MGI:97171 MT1B 156349 +HGNC:7395 MT1CP metallothionein 1C, pseudogene pseudogene pseudogene Approved 16q13 16q13 Metallothioneins 638 1990-09-10 2011-04-15 2016-10-05 441771 ENSG00000205360 OTTHUMG00000176918 NG_005880 "6089206|6327055|3785191" +HGNC:7396 MT1DP metallothionein 1D, pseudogene pseudogene pseudogene Approved 16q13 16q13 MTM "metallothionein 1D, pseudogene|metallothionein 1D, pseudogene (functional)" "Metallothioneins|Transcribed pseudogenes with published function" "638|859" 1990-09-10 2016-01-29 2016-01-29 326343 ENSG00000205361 OTTHUMG00000158354 AF348999 NR_003658 A1L3X4 "6089206|6327055|3785191|25261601" +HGNC:7397 MT1E metallothionein 1E protein-coding gene gene with protein product Approved 16q13 16q13 MTD MT1 Metallothioneins 638 1990-09-10 2007-03-02 2015-09-04 4493 ENSG00000169715 OTTHUMG00000133014 uc002ejl.5 BC009699 NM_175617 CCDS10764 P04732 "6089206|2581970" MGI:97171 MT1E 156351 +HGNC:7398 MT1F metallothionein 1F protein-coding gene gene with protein product Approved 16q13 16q13 MT1 Metallothioneins 638 1990-09-10 2007-03-02 2015-09-04 4494 ENSG00000198417 OTTHUMG00000176838 uc002ejt.4 BC029453 NM_005949 "CCDS32456|CCDS76872" P04733 "6089206|2581970" MGI:97171 MT1F 156352 +HGNC:7399 MT1G metallothionein 1G protein-coding gene gene with protein product Approved 16q13 16q13 MT1K metallothionein 1K MT1 Metallothioneins 638 1990-09-10 2015-09-04 4495 ENSG00000125144 OTTHUMG00000133275 uc002eju.2 BC020757 NM_005950 "CCDS10766|CCDS76873" P13640 "3403543|6089206" MGI:97171 MT1G 156353 +HGNC:7400 MT1H metallothionein 1H protein-coding gene gene with protein product Approved 16q13 16q13 MT1 Metallothioneins 638 1990-09-10 2015-09-04 4496 ENSG00000205358 OTTHUMG00000133283 uc002ejw.3 BC008408 NM_005951 CCDS10767 P80294 "2286373|8049263" MGI:97171 MT1H 156354 +HGNC:31864 MT1HL1 metallothionein 1H-like 1 protein-coding gene gene with protein product Approved 1q43 01q43 MT1P2 metallothionein 1 pseudogene 2 Metallothioneins 638 2007-03-01 2013-03-07 2013-03-07 2015-09-04 645745 ENSG00000244020 OTTHUMG00000040065 uc001hyk.2 AF333388 NM_001039954 CCDS31068 P0DM35 +HGNC:7401 MT1IP metallothionein 1I, pseudogene pseudogene pseudogene Approved 16q13 16q13 MTE "MT1|MT1I" metallothionein 1I Metallothioneins 638 1990-09-10 2007-03-01 2011-04-15 2014-11-19 644314 AF348997 NR_104045 "2286373|6089206|8049263" 156355 +HGNC:7402 MT1JP metallothionein 1J, pseudogene pseudogene pseudogene Approved 16q13 16q13 MTB "MT1|MT1NP|MT1J" "metallothionein 1N, pseudogene|metallothionein 1J" Metallothioneins 638 1990-09-10 2006-01-19 2011-04-15 2016-10-05 4498 ENSG00000255986 OTTHUMG00000176920 AF348994 NM_175622 "8049263|2286373" 156356 PGOHUM00000249143 +HGNC:7404 MT1L metallothionein 1L (gene/pseudogene) protein-coding gene gene with protein product Approved 16q13 16q13 "MTF|MT1R" MT1 Metallothioneins 638 1990-09-10 2007-03-02 2014-11-19 4500 ENSG00000260549 OTTHUMG00000176212 X97261 NR_001447 Q93083 "16395595|8049263|9074634" 156358 +HGNC:14296 MT1M metallothionein 1M protein-coding gene gene with protein product Approved 16q13 16q13 "MT1|MT1K" metallothionein 1K Metallothioneins 638 2005-08-22 2015-09-04 4499 ENSG00000205364 OTTHUMG00000176938 uc002ejn.4 AF136177 NM_176870 CCDS42166 Q8N339 "2286373|8049263" MGI:97171 MT1M 156357 +HGNC:23681 MT1P1 metallothionein 1 pseudogene 1 pseudogene pseudogene Approved 9q22.32 09q22.32 bA435O5.3 Metallothioneins 638 2004-12-07 2014-11-18 493987 ENSG00000213761 OTTHUMG00000020282 NG_005527 +HGNC:16120 MT1P3 metallothionein 1 pseudogene 3 pseudogene pseudogene Approved 20q11.22 20q11.22 dJ614O4.6 "C20orf127|MTL4" "chromosome 20 open reading frame 127|metallothionein-like 4" Metallothioneins 638 2001-07-17 2007-03-01 2007-03-01 2014-11-19 140851 ENSG00000229230 OTTHUMG00000032331 BC103840 NG_005652 +HGNC:7405 MT1X metallothionein 1X protein-coding gene gene with protein product Approved 16q13 16q13 MT-1l MT1 Metallothioneins 638 1990-09-10 2015-09-04 4501 ENSG00000187193 OTTHUMG00000133280 uc002ejy.4 BC032338 NM_005952 CCDS10768 P80297 "2286373|8049263" MGI:97171 MT1X 156359 +HGNC:7442 MT1XP1 metallothionein 1X pseudogene 1 pseudogene pseudogene Approved 1p36.13 01p36.13 MTL1 "metallothionein-like 1|metallothionein-like 1 pseudogene" 2001-06-22 2010-10-20 2010-10-20 2014-11-19 645652 ENSG00000233929 OTTHUMG00000037883 NG_030191 PGOHUM00000243912 +HGNC:7406 MT2A metallothionein 2A protein-coding gene gene with protein product Approved 16q13 16q13 MT2 Metallothioneins 638 2001-06-22 2014-11-18 4502 ENSG00000125148 OTTHUMG00000133281 uc002ejh.4 BC007034 NM_005953 CCDS10763 P02795 7133118 MGI:97172 RGD:1592345 MT2A 156360 +HGNC:7407 MT2P1 metallothionein 2 pseudogene 1 pseudogene pseudogene Approved 4q13.2 04q13.2 metallothionein 2 pseudogene 1 (processed) 2001-06-22 2012-11-02 2012-11-02 4503 ENSG00000162840 OTTHUMG00000160744 J00272 NG_001158 7133118 +HGNC:7408 MT3 metallothionein 3 protein-coding gene gene with protein product Approved 16q13 16q13 GIF metallothionein 3 (growth inhibitory factor (neurotrophic)) Metallothioneins 638 1992-10-27 2007-01-26 2014-11-19 4504 ENSG00000087250 OTTHUMG00000133282 uc002ejf.4 BC035624 NM_005954 CCDS10762 P25713 1631128 MGI:97173 RGD:621252 MT3 139255 +HGNC:18705 MT4 metallothionein 4 protein-coding gene gene with protein product Approved 16q13 16q13 MTIV metallothionein IV Metallothioneins 638 2002-05-29 2007-01-26 2014-11-19 84560 ENSG00000102891 OTTHUMG00000176863 uc002eje.1 BC113442 NM_032935 CCDS42165 P47944 8003488 MGI:99692 RGD:1565500 MT4 606206 +HGNC:7409 MT7SDNA mitochondrially encoded 7S DNA other region Approved mitochondria mitochondria 7S DNA 1989-10-11 2005-02-15 2007-06-18 +HGNC:7410 MTA1 metastasis associated 1 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "GATA zinc finger domain containing|Myb/SANT domain containing|NuRD complex" "82|532|1305" 1999-03-12 2014-11-19 9112 ENSG00000182979 OTTHUMG00000150362 uc001yqx.4 U35113 XM_017021752 "CCDS32169|CCDS55954" Q13330 "8083195|7607577" MGI:2150037 RGD:621018 MTA1 603526 +HGNC:7411 MTA2 metastasis associated 1 family member 2 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 MTA1-L1 MTA1L1 metastasis associated gene family, member 2 "GATA zinc finger domain containing|Myb/SANT domain containing|NuRD complex" "82|532|1305" 1999-05-17 2003-12-17 2015-11-05 2016-10-05 9219 ENSG00000149480 OTTHUMG00000167684 uc001ntq.3 AB016591 NM_004739 "CCDS8022|CCDS81576" O94776 9929979 MGI:1346340 RGD:1306743 MTA2 603947 +HGNC:23784 MTA3 metastasis associated 1 family member 3 protein-coding gene gene with protein product Approved 2p21 02p21 KIAA1266 metastasis associated gene family, member 3 "GATA zinc finger domain containing|Myb/SANT domain containing|NuRD complex" "82|532|1305" 2003-12-15 2015-11-05 2016-10-05 57504 ENSG00000057935 OTTHUMG00000150452 uc002rsq.5 AB033092 NM_020744 "CCDS46267|CCDS62900|CCDS82441" Q9BTC8 "12705869|14613024" MGI:2151172 RGD:1306803 MTA3 609050 +HGNC:7413 MTAP methylthioadenosine phosphorylase protein-coding gene gene with protein product Approved 9p21.3 09p21.3 "MSAP|c86fus" S-methyl-5'-thioadenosine phosphorylase 2001-06-22 2016-10-05 4507 ENSG00000099810 OTTHUMG00000019690 uc003zph.4 AB062485 NM_002451 CCDS6509 Q13126 11126361 MGI:1914152 RGD:1310114 MTAP 156540 299625 2.4.2.28 +HGNC:42442 MTAPP1 methylthioadenosine phosphorylase pseudogene 1 pseudogene pseudogene Approved 3q25.32 03q25.32 2011-07-28 2012-10-16 100874257 ENSG00000243025 OTTHUMG00000158805 NG_032516 PGOHUM00000263116 +HGNC:42443 MTAPP2 methylthioadenosine phosphorylase pseudogene 2 pseudogene pseudogene Approved 3q28 03q28 2011-07-28 2011-07-28 100420621 ENSG00000230077 OTTHUMG00000156314 NG_025668 PGOHUM00000237901 +HGNC:44575 MTATP6P1 mitochondrially encoded ATP synthase 6 pseudogene 1 pseudogene pseudogene Approved 1p36.33 01p36.33 2012-11-16 2015-10-19 106480796 ENSG00000248527 OTTHUMG00000002335 NG_045727 PGOHUM00000296179 +HGNC:44576 MTATP6P2 mitochondrially encoded ATP synthase 6 pseudogene 2 pseudogene pseudogene Approved 5q21.1 05q21.1 2012-11-16 2015-10-09 100287745 ENSG00000270307 OTTHUMG00000185133 NG_027709 PGOHUM00000300695 +HGNC:44577 MTATP6P3 mitochondrially encoded ATP synthase 6 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2012-11-16 2015-10-20 106479043 ENSG00000263483 OTTHUMG00000179092 NG_044446 PGOHUM00000294352 +HGNC:44578 MTATP6P4 mitochondrially encoded ATP synthase 6 pseudogene 4 pseudogene pseudogene Approved 2q21.1 02q21.1 2012-11-16 2015-10-20 106480797 ENSG00000236590 OTTHUMG00000153570 NG_045136 PGOHUM00000298135 +HGNC:44579 MTATP6P5 mitochondrially encoded ATP synthase 6 pseudogene 5 pseudogene pseudogene Approved 2q22.2 02q22.2 2012-11-16 2015-10-09 107403073 NG_046793 PGOHUM00000298180 +HGNC:44580 MTATP6P6 mitochondrially encoded ATP synthase 6 pseudogene 6 pseudogene pseudogene Approved 3p11.1 03p11.1 2012-11-16 2015-10-09 106660633 NG_044950 PGOHUM00000299087 +HGNC:44581 MTATP6P7 mitochondrially encoded ATP synthase 6 pseudogene 7 pseudogene pseudogene Approved 2q21.1 02q21.1 2012-11-16 2015-10-09 106480798 ENSG00000232990 OTTHUMG00000153767 NG_044152 PGOHUM00000298696 +HGNC:44582 MTATP6P8 mitochondrially encoded ATP synthase 6 pseudogene 8 pseudogene pseudogene Approved 7p11.2 07p11.2 2012-11-16 2015-10-09 107131119 NG_046637 PGOHUM00000302663 +HGNC:44583 MTATP6P9 mitochondrially encoded ATP synthase 6 pseudogene 9 pseudogene pseudogene Approved 4q32.1 04q32.1 2012-11-16 2015-10-20 106479044 ENSG00000248420 OTTHUMG00000161818 NG_044456 PGOHUM00000300045 +HGNC:52056 MTATP6P10 mitochondrially encoded ATP synthase 6 pseudogene 10 pseudogene pseudogene Approved 7p11.2 07p11.2 2015-10-15 2015-10-20 107403069 NG_046790 PGOHUM00000302673 +HGNC:52057 MTATP6P11 mitochondrially encoded ATP synthase 6 pseudogene 11 pseudogene pseudogene Approved 9p24.1 09p24.1 2015-10-15 2015-10-15 107075311 ENSG00000228097 OTTHUMG00000019478 PGOHUM00000304086 +HGNC:52082 MTATP6P12 mitochondrially encoded ATP synthase 6 pseudogene 12 pseudogene pseudogene Approved 8q13.2 08q13.2 2015-10-20 2015-10-20 107403071 NG_046792 PGOHUM00000303239 +HGNC:52058 MTATP6P13 mitochondrially encoded ATP synthase 6 pseudogene 13 pseudogene pseudogene Approved 1p22.1 01p22.1 2015-10-27 2015-10-27 107075272 ENSG00000229842 OTTHUMG00000010566 NG_046401 PGOHUM00000295757 +HGNC:52059 MTATP6P14 mitochondrially encoded ATP synthase 6 pseudogene 14 pseudogene pseudogene Approved 1p13.3 01p13.3 2015-10-19 2015-10-19 107075157 ENSG00000233449 OTTHUMG00000010957 NG_046402 PGOHUM00000295777 +HGNC:52060 MTATP6P15 mitochondrially encoded ATP synthase 6 pseudogene 15 pseudogene pseudogene Approved 11q22.3 11q22.3 2015-10-19 2015-10-19 107075273 ENSG00000254931 OTTHUMG00000165943 NG_046403 PGOHUM00000290672 +HGNC:52061 MTATP6P16 mitochondrially encoded ATP synthase 6 pseudogene 16 pseudogene pseudogene Approved 2q33.1 02q33.1 2015-10-19 2015-10-19 107075158 ENSG00000224299 OTTHUMG00000154759 NG_046404 PGOHUM00000298834 +HGNC:52062 MTATP6P17 mitochondrially encoded ATP synthase 6 pseudogene 17 pseudogene pseudogene Approved 2q33.2 02q33.2 2015-10-19 2015-10-19 107075274 ENSG00000235433 OTTHUMG00000154677 NG_046405 PGOHUM00000298846 +HGNC:52063 MTATP6P18 mitochondrially encoded ATP synthase 6 pseudogene 18 pseudogene pseudogene Approved 7q11.21 07q11.21 2015-10-27 2015-10-27 107075159 ENSG00000227035 OTTHUMG00000156484 NG_046406 PGOHUM00000302241 +HGNC:52064 MTATP6P19 mitochondrially encoded ATP synthase 6 pseudogene 19 pseudogene pseudogene Approved Xq22.1 Xq22.1 2015-10-27 2015-10-27 107075275 ENSG00000228316 OTTHUMG00000022071 PGOHUM00000305225 +HGNC:52176 MTATP6P20 mitochondrially encoded ATP synthase 6 pseudogene 20 pseudogene pseudogene Approved 22q12.3 22q12.3 2015-10-28 2015-10-28 107075201 ENSG00000237948 OTTHUMG00000150639 NG_046407 PGOHUM00000297756 +HGNC:52177 MTATP6P21 mitochondrially encoded ATP synthase 6 pseudogene 21 pseudogene pseudogene Approved 7q11.22 07q11.22 2015-10-28 2015-10-28 107075299 ENSG00000226392 OTTHUMG00000156572 PGOHUM00000302787 +HGNC:52178 MTATP6P22 mitochondrially encoded ATP synthase 6 pseudogene 22 pseudogene pseudogene Approved 3q13.12 03q13.12 2015-10-28 2015-10-28 107075202 ENSG00000249580 OTTHUMG00000159145 PGOHUM00000299115 +HGNC:52179 MTATP6P23 mitochondrially encoded ATP synthase 6 pseudogene 23 pseudogene pseudogene Approved 10q22.1 10q22.1 2015-10-28 2015-10-28 107075300 ENSG00000230755 OTTHUMG00000018390 NG_046408 PGOHUM00000289891 +HGNC:52180 MTATP6P24 mitochondrially encoded ATP synthase 6 pseudogene 24 pseudogene pseudogene Approved 16p13.13 16p13.13 2015-10-28 2015-10-28 107075232 ENSG00000262381 OTTHUMG00000177351 PGOHUM00000293420 +HGNC:52181 MTATP6P25 mitochondrially encoded ATP synthase 6 pseudogene 25 pseudogene pseudogene Approved 6q15 06q15 2015-10-28 2015-10-28 107075203 ENSG00000262095 OTTHUMG00000177315 NG_046409 PGOHUM00000301887 +HGNC:52182 MTATP6P26 mitochondrially encoded ATP synthase 6 pseudogene 26 pseudogene pseudogene Approved 2q14.2 02q14.2 2015-10-28 2015-10-28 107075301 ENSG00000236878 OTTHUMG00000154461 NG_046410 PGOHUM00000298663 +HGNC:52183 MTATP6P27 mitochondrially encoded ATP synthase 6 pseudogene 27 pseudogene pseudogene Approved 19p13.2 19p13.2 2015-10-28 2015-10-28 107075204 ENSG00000234003 OTTHUMG00000156410 NG_046411 PGOHUM00000295209 +HGNC:52184 MTATP6P28 mitochondrially encoded ATP synthase 6 pseudogene 28 pseudogene pseudogene Approved 2p11.2 02p11.2 2015-10-28 2015-10-28 107403070 NG_046791 PGOHUM00000298506 +HGNC:52187 MTATP6P29 mitochondrially encoded ATP synthase 6 pseudogene 29 pseudogene pseudogene Approved 9q22.31 09q22.31 2015-10-28 2016-07-21 107075315 ENSG00000232179 OTTHUMG00000021035 NG_046412 +HGNC:52185 MTATP6P30 mitochondrially encoded ATP synthase 6 pseudogene 30 pseudogene pseudogene Approved 9p21.1 09p21.1 2015-10-28 2015-10-28 107075302 ENSG00000226998 OTTHUMG00000019736 NG_046413 PGOHUM00000304147 +HGNC:52186 MTATP6P31 mitochondrially encoded ATP synthase 6 pseudogene 31 pseudogene pseudogene Approved 6q25.2 06q25.2 2015-10-28 2015-10-28 107075205 ENSG00000218776 OTTHUMG00000015863 PGOHUM00000301996 +HGNC:44571 MTATP8P1 mitochondrially encoded ATP synthase 8 pseudogene 1 pseudogene pseudogene Approved 1p36.33 01p36.33 2012-11-16 2015-10-19 106480795 ENSG00000240409 OTTHUMG00000002473 NG_045722 +HGNC:44572 MTATP8P2 mitochondrially encoded ATP synthase 8 pseudogene 2 pseudogene pseudogene Approved 2p11.2 02p11.2 2012-11-16 2015-10-27 106479042 ENSG00000229604 OTTHUMG00000153275 NG_045164 +HGNC:44573 MTATP8P3 mitochondrially encoded ATP synthase 8 pseudogene 3 pseudogene pseudogene Approved 5q21.1 05q21.1 2012-11-16 2012-11-16 107161229 NG_046707 +HGNC:44574 MTATP8P4 mitochondrially encoded ATP synthase 8 pseudogene 4 pseudogene pseudogene Approved 10q24.2 10q24.2 2012-11-16 2012-11-16 107080107 NG_046376 +HGNC:7416 MTATT mitochondrially encoded membrane attachment site other region Approved mitochondria mitochondria membrane attachment site 1989-10-11 2005-02-15 2008-08-27 +HGNC:7417 MTBP MDM2 binding protein protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "MDM2 (mouse double minute 2)-binding protein, 104kD|Mdm2, transformed 3T3 cell double minute 2, p53 binding protein (mouse) binding protein, 104kDa" 2000-08-23 2014-03-03 2016-10-05 27085 ENSG00000172167 OTTHUMG00000165040 uc003ypc.3 NM_022045 CCDS6333 Q96DY7 "10906133|11060448" MGI:2146005 RGD:1565672 MTBP 605927 +HGNC:17586 MTCH1 mitochondrial carrier 1 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "CGI-64|PSAP|SLC25A49" solute carrier family 25, member 49 mitochondrial carrier homolog 1 (C. elegans) Solute carriers 752 2003-05-20 2011-05-19 2014-11-19 23787 ENSG00000137409 OTTHUMG00000014614 uc003onc.3 AF151822 NM_014341 "CCDS4828|CCDS64411" Q9NZJ7 12377771 MGI:1929261 RGD:1309262 MTCH1 610449 SLC25A49 objectId:2554 +HGNC:17587 MTCH2 mitochondrial carrier 2 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 SLC25A50 solute carrier family 25, member 50 mitochondrial carrier homolog 2 (C. elegans) Solute carriers 752 2003-05-20 2011-05-19 2014-11-19 23788 ENSG00000109919 OTTHUMG00000166926 uc010rho.3 AF085361 NM_014342 CCDS7943 Q9Y6C9 MGI:1929260 RGD:1308080 MTCH2 613221 SLC25A50 objectId:2555 +HGNC:29121 MTCL1 microtubule crosslinking factor 1 protein-coding gene gene with protein product Approved 18p11.22 18p11.22 "KIAA0802|CCDC165|SOGA2" "KIAA0802|coiled-coil domain containing 165|SOGA family member 2" 2004-04-29 2014-02-20 2014-02-20 2014-11-19 23255 ENSG00000168502 OTTHUMG00000131594 AB018345 NM_015210 CCDS11841 Q9Y4B5 "9872452|23902687" MGI:1915867 RGD:1308319 615766 +HGNC:42040 MTCL1P1 MTCL1 pseudogene 1 pseudogene pseudogene Approved 13q21.33 13q21.33 "CCDC165P1|SOGA2P1" "coiled-coil domain containing 165 pseudogene 1|SOGA family member 2 pseudogene 1" 2011-06-01 2014-02-20 2014-02-20 2014-02-20 100288130 ENSG00000226554 OTTHUMG00000017058 NG_029110 PGOHUM00000248625 +HGNC:7420 MTCO1P1 mitochondrially encoded cytochrome c oxidase I pseudogene 1 pseudogene pseudogene Approved 21p11.2 21p11.2 "cytochrome c oxidase pseudogene 1|MTCO1 pseudogene 1|MT-CO1 pseudogene 1" 2000-06-16 2016-07-21 2016-07-21 56167 ENSG00000280243 OTTHUMG00000189421 NG_027865 PGOHUM00000297309 +HGNC:19932 MTCO1P2 mitochondrially encoded cytochrome c oxidase I pseudogene 2 pseudogene pseudogene Approved 14q12 14q12 "cytochrome c oxidase pseudogene 2|MTCO1 pseudogene 2|MT-CO1 pseudogene 2" 2003-01-13 2016-07-21 2016-10-05 326603 ENSG00000259045 OTTHUMG00000170593 NG_002593 PGOHUM00000292314 +HGNC:39604 MTCO1P3 mitochondrially encoded cytochrome c oxidase I pseudogene 3 pseudogene pseudogene Approved 21q22.3 21q22.3 "MTCO1 pseudogene 3|MT-CO1 pseudogene 3" 2011-03-17 2016-07-21 2016-07-21 100873205 ENSG00000228930 OTTHUMG00000090406 NG_032327 PGOHUM00000297278 +HGNC:50350 MTCO1P4 mitochondrially encoded cytochrome c oxidase I pseudogene 4 pseudogene pseudogene Approved 8q22.3 08q22.3 MT-CO1 pseudogene 4 2014-04-16 2016-07-21 2016-07-21 106480684 ENSG00000253556 OTTHUMG00000164843 NG_043281 PGOHUM00000303647 +HGNC:51300 MTCO1P5 mitochondrially encoded cytochrome c oxidase I pseudogene 5 pseudogene pseudogene Approved 3p25.2 03p25.2 AC026166.2-001 MT-CO1 pseudogene 5 2014-09-25 2016-07-21 2016-07-21 106480318 ENSG00000233026 OTTHUMG00000155369 NG_044410 25243407 PGOHUM00000298947 +HGNC:52008 MTCO1P6 mitochondrially encoded cytochrome c oxidase I pseudogene 6 pseudogene pseudogene Approved 3p11.1 03p11.1 MT-CO1 pseudogene 6 2015-10-15 2016-07-21 2016-07-21 107075137 ENSG00000240309 OTTHUMG00000159038 NG_046444 PGOHUM00000299089 +HGNC:52009 MTCO1P7 mitochondrially encoded cytochrome c oxidase I pseudogene 7 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-CO1 pseudogene 7 2015-10-15 2016-07-21 2016-07-21 107075263 ENSG00000236211 OTTHUMG00000153771 NG_046445 PGOHUM00000298694 +HGNC:52010 MTCO1P8 mitochondrially encoded cytochrome c oxidase I pseudogene 8 pseudogene pseudogene Approved 7q11.21 07q11.21 MT-CO1 pseudogene 8 2015-10-16 2016-07-21 2016-07-21 107075138 ENSG00000234700 OTTHUMG00000156474 NG_046446 PGOHUM00000302243 +HGNC:52011 MTCO1P9 mitochondrially encoded cytochrome c oxidase I pseudogene 9 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-CO1 pseudogene 9 2015-10-16 2016-07-21 2016-07-21 107075139 ENSG00000251223 OTTHUMG00000161811 NG_046447 PGOHUM00000300047 +HGNC:52012 MTCO1P10 mitochondrially encoded cytochrome c oxidase I pseudogene 10 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-CO1 pseudogene 10 2015-10-16 2016-07-21 2016-07-21 107075140 NG_046414 PGOHUM00000302671 +HGNC:52013 MTCO1P11 mitochondrially encoded cytochrome c oxidase I pseudogene 11 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-CO1 pseudogene 11 2015-10-21 2016-07-21 2016-07-21 107075264 ENSG00000224083 OTTHUMG00000019485 PGOHUM00000304084 +HGNC:52014 MTCO1P12 mitochondrially encoded cytochrome c oxidase I pseudogene 12 pseudogene pseudogene Approved 1p36.33 01p36.33 MT-CO1 pseudogene 12 2015-10-19 2016-07-21 2016-07-21 107075141 ENSG00000237973 OTTHUMG00000002333 NG_046415 PGOHUM00000296177 +HGNC:52015 MTCO1P13 mitochondrially encoded cytochrome c oxidase I pseudogene 13 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-CO1 pseudogene 13 2015-10-19 2016-07-21 2016-07-21 107105281 NG_046602 PGOHUM00000294350 +HGNC:52016 MTCO1P14 mitochondrially encoded cytochrome c oxidase I pseudogene 14 pseudogene pseudogene Approved 1p13.3 01p13.3 MT-CO1 pseudogene 14 2015-10-19 2016-07-21 2016-07-21 107075142 ENSG00000232551 OTTHUMG00000010955 NG_046416 PGOHUM00000295779 +HGNC:52017 MTCO1P15 mitochondrially encoded cytochrome c oxidase I pseudogene 15 pseudogene pseudogene Approved 11q22.3 11q22.3 MT-CO1 pseudogene 15 2015-10-19 2016-07-21 2016-07-21 107075265 ENSG00000255350 OTTHUMG00000165946 NG_046417 PGOHUM00000290674 +HGNC:52018 MTCO1P16 mitochondrially encoded cytochrome c oxidase I pseudogene 16 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-CO1 pseudogene 16 2015-10-19 2016-07-21 2016-07-21 107105283 NG_046604 PGOHUM00000298832 +HGNC:52019 MTCO1P17 mitochondrially encoded cytochrome c oxidase I pseudogene 17 pseudogene pseudogene Approved 2q33.2 02q33.2 MT-CO1 pseudogene 17 2015-10-19 2016-07-21 2016-07-21 107075222 ENSG00000223619 OTTHUMG00000154675 NG_046418 PGOHUM00000298844 +HGNC:52020 MTCO1P18 mitochondrially encoded cytochrome c oxidase I pseudogene 18 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-CO1 pseudogene 18 2015-10-19 2016-07-21 2016-07-21 107075143 ENSG00000237910 OTTHUMG00000153565 NG_046419 PGOHUM00000298137 +HGNC:52021 MTCO1P19 mitochondrially encoded cytochrome c oxidase I pseudogene 19 pseudogene pseudogene Approved Xq22.1 Xq22.1 MT-CO1 pseudogene 19 2015-10-19 2016-07-21 2016-07-21 107075144 ENSG00000237300 OTTHUMG00000022069 PGOHUM00000305223 +HGNC:52085 MTCO1P20 mitochondrially encoded cytochrome c oxidase I pseudogene 20 pseudogene pseudogene Approved 22q12.3 22q12.3 MT-CO1 pseudogene 20 2015-10-20 2016-07-21 2016-07-21 107075163 ENSG00000233764 OTTHUMG00000150633 NG_046420 PGOHUM00000297754 +HGNC:52086 MTCO1P21 mitochondrially encoded cytochrome c oxidase I pseudogene 21 pseudogene pseudogene Approved 1p22.1 01p22.1 MT-CO1 pseudogene 21 2015-10-20 2016-07-21 2016-07-21 107075164 ENSG00000226960 OTTHUMG00000010563 NG_046421 PGOHUM00000295759 +HGNC:52087 MTCO1P22 mitochondrially encoded cytochrome c oxidase I pseudogene 22 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-CO1 pseudogene 22 2015-10-20 2016-07-21 2016-07-21 107075165 ENSG00000271207 OTTHUMG00000185135 NG_046422 PGOHUM00000300697 +HGNC:52088 MTCO1P23 mitochondrially encoded cytochrome c oxidase I pseudogene 23 pseudogene pseudogene Approved 10q22.1 10q22.1 MT-CO1 pseudogene 23 2015-10-20 2016-07-21 2016-07-21 107075281 ENSG00000235524 OTTHUMG00000018387 NG_046423 PGOHUM00000289893 +HGNC:52089 MTCO1P24 mitochondrially encoded cytochrome c oxidase I pseudogene 24 pseudogene pseudogene Approved 5q15 05q15 MT-CO1 pseudogene 24 2015-10-20 2016-07-21 2016-07-21 107075166 ENSG00000249448 OTTHUMG00000162709 NG_046424 PGOHUM00000300684 +HGNC:52090 MTCO1P25 mitochondrially encoded cytochrome c oxidase I pseudogene 25 pseudogene pseudogene Approved 7q11.22 07q11.22 MT-CO1 pseudogene 25 2015-10-21 2016-07-21 2016-07-21 107075167 ENSG00000229031 OTTHUMG00000156609 NG_046425 PGOHUM00000302286 +HGNC:52091 MTCO1P26 mitochondrially encoded cytochrome c oxidase I pseudogene 26 pseudogene pseudogene Approved 11p12 11p12 MT-CO1 pseudogene 26 2015-10-21 2016-07-21 2016-07-21 107105267 NG_046585 PGOHUM00000290876 +HGNC:52092 MTCO1P27 mitochondrially encoded cytochrome c oxidase I pseudogene 27 pseudogene pseudogene Approved 19p13.2 19p13.2 MT-CO1 pseudogene 27 2015-10-20 2016-07-21 2016-07-21 107075168 ENSG00000232579 OTTHUMG00000156412 NG_046426 PGOHUM00000295207 +HGNC:52093 MTCO1P28 mitochondrially encoded cytochrome c oxidase I pseudogene 28 pseudogene pseudogene Approved 16p13.3 16p13.3 MT-CO1 pseudogene 28 2015-10-20 2016-07-21 2016-07-21 107075169 ENSG00000262118 OTTHUMG00000177597 NG_046427 PGOHUM00000293403 +HGNC:52094 MTCO1P29 mitochondrially encoded cytochrome c oxidase I pseudogene 29 pseudogene pseudogene Approved 3q13.33 03q13.33 MT-CO1 pseudogene 29 2015-10-20 2016-07-21 2016-07-21 107075225 ENSG00000240452 OTTHUMG00000159663 NG_046428 PGOHUM00000299549 +HGNC:52095 MTCO1P30 mitochondrially encoded cytochrome c oxidase I pseudogene 30 pseudogene pseudogene Approved 5p15.32 05p15.32 MT-CO1 pseudogene 30 2015-10-20 2016-07-21 2016-07-21 107075170 ENSG00000248729 OTTHUMG00000161666 NG_046429 PGOHUM00000300480 +HGNC:52096 MTCO1P31 mitochondrially encoded cytochrome c oxidase I pseudogene 31 pseudogene pseudogene Approved 5p15.32 05p15.32 MT-CO1 pseudogene 31 2015-10-20 2016-07-21 2016-07-21 107075171 ENSG00000251476 OTTHUMG00000161664 NG_046430 PGOHUM00000300482 +HGNC:52097 MTCO1P32 mitochondrially encoded cytochrome c oxidase I pseudogene 32 pseudogene pseudogene Approved 20q11.21 20q11.21 MT-CO1 pseudogene 32 2015-10-21 2016-07-21 2016-07-21 107105268 NG_046586 PGOHUM00000296961 +HGNC:52098 MTCO1P33 mitochondrially encoded cytochrome c oxidase I pseudogene 33 pseudogene pseudogene Approved 22p11.2 22p11.2 MT-CO1 pseudogene 33 2015-10-21 2016-07-21 2016-07-21 107105269 NG_046587 PGOHUM00000297579 +HGNC:52099 MTCO1P34 mitochondrially encoded cytochrome c oxidase I pseudogene 34 pseudogene pseudogene Approved 22p11.2 22p11.2 MT-CO1 pseudogene 34 2015-10-21 2016-07-21 2016-07-21 107105270 NG_046588 PGOHUM00000297407 +HGNC:52100 MTCO1P35 mitochondrially encoded cytochrome c oxidase I pseudogene 35 pseudogene pseudogene Approved 3q13.12 03q13.12 MT-CO1 pseudogene 35 2015-10-21 2016-07-21 2016-07-21 107075234 ENSG00000250630 OTTHUMG00000159143 PGOHUM00000299117 +HGNC:52101 MTCO1P36 mitochondrially encoded cytochrome c oxidase I pseudogene 36 pseudogene pseudogene Approved 9q13 09q13 MT-CO1 pseudogene 36 2015-10-21 2016-07-21 2016-07-21 107105272 NG_046589 PGOHUM00000304264 +HGNC:52102 MTCO1P37 mitochondrially encoded cytochrome c oxidase I pseudogene 37 pseudogene pseudogene Approved Yq11.21 Yq11.21 MT-CO1 pseudogene 37 2015-10-21 2016-07-21 2016-07-21 107105273 NG_046591 PGOHUM00000305637 +HGNC:52103 MTCO1P38 mitochondrially encoded cytochrome c oxidase I pseudogene 38 pseudogene pseudogene Approved 1q43 01q43 MT-CO1 pseudogene 38 2015-10-21 2016-07-21 2016-07-21 107105274 NG_046592 PGOHUM00000296112 +HGNC:52104 MTCO1P39 mitochondrially encoded cytochrome c oxidase I pseudogene 39 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-CO1 pseudogene 39 2015-10-20 2016-07-21 2016-07-21 107075282 ENSG00000224254 OTTHUMG00000059470 NG_046431 PGOHUM00000294313 +HGNC:52105 MTCO1P40 mitochondrially encoded cytochrome c oxidase I pseudogene 40 pseudogene pseudogene Approved 17q22 17q22 MT-CO1 pseudogene 40 2015-10-20 2016-07-21 2016-07-21 107075172 ENSG00000262902 OTTHUMG00000177751 PGOHUM00000294477 +HGNC:52106 MTCO1P41 mitochondrially encoded cytochrome c oxidase I pseudogene 41 pseudogene pseudogene Approved 19q13.12 19q13.12 MT-CO1 pseudogene 41 2015-10-21 2016-07-21 2016-07-21 107105277 NG_046595 PGOHUM00000295353 +HGNC:52107 MTCO1P42 mitochondrially encoded cytochrome c oxidase I pseudogene 42 pseudogene pseudogene Approved 2p16.3 02p16.3 MT-CO1 pseudogene 42 2015-10-20 2016-07-21 2016-07-21 107075283 ENSG00000230327 OTTHUMG00000151798 NG_046432 PGOHUM00000297861 +HGNC:52108 MTCO1P43 mitochondrially encoded cytochrome c oxidase I pseudogene 43 pseudogene pseudogene Approved 2q14.1 02q14.1 MT-CO1 pseudogene 43 2015-10-20 2016-07-21 2016-07-21 107075173 ENSG00000228898 OTTHUMG00000153404 NG_046433 PGOHUM00000298658 +HGNC:52109 MTCO1P44 mitochondrially encoded cytochrome c oxidase I pseudogene 44 pseudogene pseudogene Approved 2q22.1 02q22.1 MT-CO1 pseudogene 44 2015-10-20 2016-07-21 2016-07-21 107075226 ENSG00000227149 OTTHUMG00000153663 NG_046434 PGOHUM00000298167 +HGNC:52110 MTCO1P45 mitochondrially encoded cytochrome c oxidase I pseudogene 45 pseudogene pseudogene Approved 2q24.1 02q24.1 MT-CO1 pseudogene 45 2015-10-21 2016-07-21 2016-07-21 107075174 ENSG00000232982 OTTHUMG00000153812 NG_046435 PGOHUM00000298195 +HGNC:52111 MTCO1P46 mitochondrially encoded cytochrome c oxidase I pseudogene 46 pseudogene pseudogene Approved 2q34 02q34 MT-CO1 pseudogene 46 2015-10-21 2016-07-21 2016-07-21 107075175 ENSG00000236007 OTTHUMG00000154767 NG_046436 PGOHUM00000298873 +HGNC:52112 MTCO1P47 mitochondrially encoded cytochrome c oxidase I pseudogene 47 pseudogene pseudogene Approved 8q23.2 08q23.2 MT-CO1 pseudogene 47 2015-10-21 2016-07-21 2016-07-21 107075284 ENSG00000254241 OTTHUMG00000164907 NG_046437 PGOHUM00000303356 +HGNC:52113 MTCO1P48 mitochondrially encoded cytochrome c oxidase I pseudogene 48 pseudogene pseudogene Approved 2q11.1 02q11.1 MT-CO1 pseudogene 48 2015-10-21 2016-07-21 2016-07-21 107075176 ENSG00000237055 OTTHUMG00000155136 PGOHUM00000298010 +HGNC:52114 MTCO1P49 mitochondrially encoded cytochrome c oxidase I pseudogene 49 pseudogene pseudogene Approved 8q24.22 08q24.22 MT-CO1 pseudogene 49 2015-10-21 2016-07-21 2016-07-21 107075177 ENSG00000253916 OTTHUMG00000164536 NG_046438 PGOHUM00000303687 +HGNC:52115 MTCO1P50 mitochondrially encoded cytochrome c oxidase I pseudogene 50 pseudogene pseudogene Approved 9q21.31 09q21.31 MT-CO1 pseudogene 50 2015-10-21 2016-07-21 2016-07-21 107105279 NG_046599 PGOHUM00000303946 +HGNC:52116 MTCO1P51 mitochondrially encoded cytochrome c oxidase I pseudogene 51 pseudogene pseudogene Approved 9q21.31 09q21.31 MT-CO1 pseudogene 51 2015-10-21 2016-07-21 2016-07-21 100287067 ENSG00000232981 OTTHUMG00000020078 NG_032774 PGOHUM00000303950 +HGNC:52117 MTCO1P52 mitochondrially encoded cytochrome c oxidase I pseudogene 52 pseudogene pseudogene Approved Xp11.21 Xp11.21 MT-CO1 pseudogene 52 2015-10-21 2016-07-21 2016-07-21 107075227 ENSG00000229760 OTTHUMG00000021647 NG_046439 PGOHUM00000304645 +HGNC:52118 MTCO1P53 mitochondrially encoded cytochrome c oxidase I pseudogene 53 pseudogene pseudogene Approved Xq25 Xq25 MT-CO1 pseudogene 53 2015-10-21 2016-07-21 2016-07-21 107075285 ENSG00000230916 OTTHUMG00000022350 NG_046440 PGOHUM00000305303 +HGNC:52119 MTCO1P54 mitochondrially encoded cytochrome c oxidase I pseudogene 54 pseudogene pseudogene Approved 2q33.2 02q33.2 MT-CO1 pseudogene 54 2015-10-21 2016-07-21 2016-07-21 107075178 ENSG00000233311 OTTHUMG00000154673 NG_046441 PGOHUM00000298286 +HGNC:52120 MTCO1P55 mitochondrially encoded cytochrome c oxidase I pseudogene 55 pseudogene pseudogene Approved 7q34 07q34 MT-CO1 pseudogene 55 2015-10-21 2016-07-21 2016-07-21 107075179 ENSG00000241926 OTTHUMG00000157633 NG_046442 PGOHUM00000302451 +HGNC:52121 MTCO1P56 mitochondrially encoded cytochrome c oxidase I pseudogene 56 pseudogene pseudogene Approved 6q15 06q15 MT-CO1 pseudogene 56 2015-10-21 2016-07-21 2016-07-21 107075286 ENSG00000220340 OTTHUMG00000015219 NG_046443 PGOHUM00000301472 +HGNC:52315 MTCO1P57 mitochondrially encoded cytochrome c oxidase I pseudogene 57 pseudogene pseudogene Approved 7q11.22 07q11.22 2016-07-22 2016-07-22 ENSG00000232975 OTTHUMG00000156581 PGOHUM00000302789 +HGNC:16564 MTCO2P1 mitochondrially encoded cytochrome c oxidase II pseudogene 1 pseudogene pseudogene Approved 20q13.33 20q13.33 dJ342K12.1 MTCO2L "cytochrome c oxidase II-like|MTCO2 like|MTCO2 pseudogene 1|MT-CO2 pseudogene 1" 2001-09-17 2010-08-18 2016-07-21 2016-07-21 140909 ENSG00000229690 OTTHUMG00000032881 AL121918 NG_001007 PGOHUM00000297031 +HGNC:25354 MTCO2P2 mitochondrially encoded cytochrome c oxidase II pseudogene 2 pseudogene pseudogene Approved 18q21.1 18q21.1 HsT4010 "MTCO2 pseudogene 2|MT-CO2 pseudogene 2" 2011-03-15 2016-07-21 2016-07-21 100873202 ENSG00000267541 OTTHUMG00000180285 NG_032189 PGOHUM00000294658 +HGNC:39576 MTCO2P3 mitochondrially encoded cytochrome c oxidase II pseudogene 3 pseudogene pseudogene Approved 13q21.1 13q21.1 "MTCO2 pseudogene 3|MT-CO2 pseudogene 3" 2011-03-15 2016-07-21 2016-07-21 100873203 ENSG00000230009 OTTHUMG00000016988 NG_032320 PGOHUM00000292167 +HGNC:50349 MTCO2P4 mitochondrially encoded cytochrome c oxidase II pseudogene 4 pseudogene pseudogene Approved 8q22.3 08q22.3 MT-CO2 pseudogene 4 2014-04-16 2016-07-21 2016-07-21 106480296 ENSG00000253977 OTTHUMG00000164844 NG_044225 +HGNC:52124 MTCO2P5 mitochondrially encoded cytochrome c oxidase II pseudogene 5 pseudogene pseudogene Approved 2q22.2 02q22.2 MT-CO2 pseudogene 5 2015-10-23 2016-07-21 2016-07-21 107075181 ENSG00000231766 OTTHUMG00000153841 NG_046463 PGOHUM00000298181 +HGNC:52022 MTCO2P6 mitochondrially encoded cytochrome c oxidase II pseudogene 6 pseudogene pseudogene Approved 3p11.1 03p11.1 MT-CO2 pseudogene 6 2015-10-19 2016-07-21 2016-07-21 107075266 ENSG00000240951 OTTHUMG00000159039 NG_046464 PGOHUM00000299088 +HGNC:52023 MTCO2P7 mitochondrially encoded cytochrome c oxidase II pseudogene 7 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-CO2 pseudogene 7 2015-10-19 2016-07-21 2016-07-21 107075145 ENSG00000230496 OTTHUMG00000153775 NG_046465 PGOHUM00000298695 +HGNC:52024 MTCO2P8 mitochondrially encoded cytochrome c oxidase II pseudogene 8 pseudogene pseudogene Approved 7q11.21 07q11.21 MT-CO2 pseudogene 8 2015-10-19 2016-07-21 2016-07-21 107075146 ENSG00000234234 OTTHUMG00000156476 NG_046466 PGOHUM00000302242 +HGNC:52025 MTCO2P9 mitochondrially encoded cytochrome c oxidase II pseudogene 9 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-CO2 pseudogene 9 2015-10-19 2016-07-21 2016-07-21 107075267 ENSG00000249386 OTTHUMG00000161814 NG_046467 PGOHUM00000300046 +HGNC:52026 MTCO2P10 mitochondrially encoded cytochrome c oxidase II pseudogene 10 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-CO2 pseudogene 10 2015-10-19 2016-07-21 2016-07-21 107161153 NG_046693 PGOHUM00000302672 +HGNC:52027 MTCO2P11 mitochondrially encoded cytochrome c oxidase II pseudogene 11 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-CO2 pseudogene 11 2015-10-19 2016-07-21 2016-07-21 107075214 ENSG00000235917 OTTHUMG00000019480 PGOHUM00000304085 +HGNC:52028 MTCO2P12 mitochondrially encoded cytochrome c oxidase II pseudogene 12 pseudogene pseudogene Approved 1p36.33 01p36.33 MT-CO2 pseudogene 12 2015-10-19 2016-07-21 2016-07-21 107075310 ENSG00000229344 OTTHUMG00000002334 NG_046448 PGOHUM00000296178 +HGNC:52029 MTCO2P13 mitochondrially encoded cytochrome c oxidase II pseudogene 13 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-CO2 pseudogene 13 2015-10-19 2016-07-21 2016-07-21 107403168 NG_046814 PGOHUM00000294351 +HGNC:52030 MTCO2P14 mitochondrially encoded cytochrome c oxidase II pseudogene 14 pseudogene pseudogene Approved 1p13.3 01p13.3 MT-CO2 pseudogene 14 2015-10-19 2016-07-21 2016-07-21 107403169 NG_046815 PGOHUM00000295778 +HGNC:52031 MTCO2P15 mitochondrially encoded cytochrome c oxidase II pseudogene 15 pseudogene pseudogene Approved 11q22.3 11q22.3 MT-CO2 pseudogene 15 2015-10-19 2016-07-21 2016-07-21 107075147 ENSG00000255417 OTTHUMG00000165945 NG_046449 PGOHUM00000290673 +HGNC:52032 MTCO2P16 mitochondrially encoded cytochrome c oxidase II pseudogene 16 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-CO2 pseudogene 16 2015-10-19 2016-07-21 2016-07-21 107075148 ENSG00000234842 OTTHUMG00000154761 NG_046450 PGOHUM00000298833 +HGNC:52033 MTCO2P17 mitochondrially encoded cytochrome c oxidase II pseudogene 17 pseudogene pseudogene Approved 2q33.2 02q33.2 MT-CO2 pseudogene 17 2015-10-19 2016-07-21 2016-07-21 107075268 ENSG00000233888 OTTHUMG00000154676 NG_046451 PGOHUM00000298845 +HGNC:52034 MTCO2P18 mitochondrially encoded cytochrome c oxidase II pseudogene 18 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-CO2 pseudogene 18 2015-10-19 2016-07-21 2016-07-21 107075149 ENSG00000234480 OTTHUMG00000153564 NG_046452 PGOHUM00000298136 +HGNC:52035 MTCO2P19 mitochondrially encoded cytochrome c oxidase II pseudogene 19 pseudogene pseudogene Approved Xq22.1 Xq22.1 MT-CO2 pseudogene 19 2015-10-19 2016-07-21 2016-07-21 107075223 ENSG00000237628 OTTHUMG00000022070 PGOHUM00000305224 +HGNC:52149 MTCO2P20 mitochondrially encoded cytochrome c oxidase II pseudogene 20 pseudogene pseudogene Approved 22q12.3 22q12.3 MT-CO2 pseudogene 20 2015-10-23 2016-07-21 2016-07-21 107075230 ENSG00000231576 OTTHUMG00000150631 NG_046453 PGOHUM00000297755 +HGNC:52150 MTCO2P21 mitochondrially encoded cytochrome c oxidase II pseudogene 21 pseudogene pseudogene Approved 1p22.1 01p22.1 MT-CO2 pseudogene 21 2015-10-23 2016-07-21 2016-07-21 107075191 ENSG00000236689 OTTHUMG00000010565 NG_046454 PGOHUM00000295758 +HGNC:52151 MTCO2P22 mitochondrially encoded cytochrome c oxidase II pseudogene 22 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-CO2 pseudogene 22 2015-10-23 2016-07-21 2016-07-21 100289404 ENSG00000270225 OTTHUMG00000185134 NG_027710 PGOHUM00000300696 +HGNC:52152 MTCO2P23 mitochondrially encoded cytochrome c oxidase II pseudogene 23 pseudogene pseudogene Approved 10q22.1 10q22.1 MT-CO2 pseudogene 23 2015-10-23 2016-07-21 2016-07-21 107075192 ENSG00000235803 OTTHUMG00000018389 NG_046455 PGOHUM00000289892 +HGNC:52153 MTCO2P24 mitochondrially encoded cytochrome c oxidase II pseudogene 24 pseudogene pseudogene Approved 5q15 05q15 MT-CO2 pseudogene 24 2015-10-23 2016-07-21 2016-07-21 107075193 ENSG00000249990 OTTHUMG00000162716 NG_046456 PGOHUM00000300683 +HGNC:52154 MTCO2P25 mitochondrially encoded cytochrome c oxidase II pseudogene 25 pseudogene pseudogene Approved 7q11.22 07q11.22 MT-CO2 pseudogene 25 2015-10-23 2016-07-21 2016-07-21 107075290 ENSG00000230654 OTTHUMG00000156610 NG_046457 PGOHUM00000302285 +HGNC:52155 MTCO2P26 mitochondrially encoded cytochrome c oxidase II pseudogene 26 pseudogene pseudogene Approved 11p12 11p12 MT-CO2 pseudogene 26 2015-10-23 2016-07-21 2016-07-21 107403163 NG_046812 PGOHUM00000290877 +HGNC:52156 MTCO2P27 mitochondrially encoded cytochrome c oxidase II pseudogene 27 pseudogene pseudogene Approved 19p13.2 19p13.2 MT-CO2 pseudogene 27 2015-10-23 2016-07-21 2016-07-21 107075291 ENSG00000230321 OTTHUMG00000156415 NG_046458 PGOHUM00000295208 +HGNC:52157 MTCO2P28 mitochondrially encoded cytochrome c oxidase II pseudogene 28 pseudogene pseudogene Approved 16p13.3 16p13.3 MT-CO2 pseudogene 28 2015-10-23 2016-07-21 2016-07-21 107126362 NG_046635 PGOHUM00000293402 +HGNC:52158 MTCO2P29 mitochondrially encoded cytochrome c oxidase II pseudogene 29 pseudogene pseudogene Approved 3q13.33 03q13.33 MT-CO2 pseudogene 29 2015-10-23 2016-07-21 2016-07-21 107075194 ENSG00000243257 OTTHUMG00000159665 NG_046459 PGOHUM00000299550 +HGNC:52159 MTCO2P30 mitochondrially encoded cytochrome c oxidase II pseudogene 30 pseudogene pseudogene Approved 5p15.32 05p15.32 MT-CO2 pseudogene 30 2015-10-23 2016-07-21 2016-07-21 107075195 ENSG00000250808 OTTHUMG00000161667 NG_046460 PGOHUM00000300481 +HGNC:52160 MTCO2P31 mitochondrially encoded cytochrome c oxidase II pseudogene 31 pseudogene pseudogene Approved 6q25.2 06q25.2 MT-CO2 pseudogene 31 2015-10-23 2016-07-21 2016-07-21 107075292 ENSG00000217160 OTTHUMG00000015861 NG_046461 PGOHUM00000301995 +HGNC:52161 MTCO2P32 mitochondrially encoded cytochrome c oxidase II pseudogene 32 pseudogene pseudogene Approved 5p15.33 05p15.33 MT-CO2 pseudogene 32 2015-10-23 2016-07-21 2016-07-21 107075196 ENSG00000248951 OTTHUMG00000161735 PGOHUM00000300476 +HGNC:52162 MTCO2P33 mitochondrially encoded cytochrome c oxidase II pseudogene 33 pseudogene pseudogene Approved 6p22.3 06p22.3 MT-CO2 pseudogene 33 2015-10-23 2016-07-21 2016-07-21 107075197 ENSG00000217083 OTTHUMG00000014376 NG_046462 PGOHUM00000301679 +HGNC:52316 MTCO2P34 mitochondrially encoded cytochrome c oxidase II pseudogene 34 pseudogene pseudogene Approved 1p32.3 01p32.3 2016-07-22 2016-07-22 ENSG00000232198 OTTHUMG00000008213 PGOHUM00000295689 +HGNC:31342 MTCO3P1 mitochondrially encoded cytochrome c oxidase III pseudogene 1 pseudogene pseudogene Approved 6p21.32 06p21.32 U92032.1 "cytochrome c oxidase III pseudogene 1|MTCO3 pseudogene 1|MT-CO3 pseudogene 1" 2004-03-02 2016-07-21 2016-07-21 404026 ENSG00000235040 OTTHUMG00000031271 NG_027900 PGOHUM00000301334 +HGNC:39681 MTCO3P2 mitochondrially encoded cytochrome c oxidase III pseudogene 2 pseudogene pseudogene Approved 13q12.12 13q12.12 "MTCO3 pseudogene 2|MT-CO3 pseudogene 2" 2011-03-22 2016-07-21 2016-07-21 100873207 ENSG00000232102 OTTHUMG00000016569 NG_032347 +HGNC:52080 MTCO3P3 mitochondrially encoded cytochrome c oxidase III pseudogene 3 pseudogene pseudogene Approved 8q13.2 08q13.2 MT-CO3 pseudogene 3 2015-10-21 2016-07-21 2016-07-21 107403237 NG_046820 PGOHUM00000303238 +HGNC:52079 MTCO3P4 mitochondrially encoded cytochrome c oxidase III pseudogene 4 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-CO3 pseudogene 4 2015-10-21 2016-07-21 2016-07-21 107075216 ENSG00000228851 OTTHUMG00000156678 NG_046482 PGOHUM00000302674 +HGNC:52123 MTCO3P5 mitochondrially encoded cytochrome c oxidase III pseudogene 5 pseudogene pseudogene Approved 2q22.2 02q22.2 MT-CO3 pseudogene 5 2015-10-23 2016-07-21 2016-07-21 107075228 ENSG00000225476 OTTHUMG00000153838 NG_046489 PGOHUM00000298179 +HGNC:52036 MTCO3P6 mitochondrially encoded cytochrome c oxidase III pseudogene 6 pseudogene pseudogene Approved 3p11.1 03p11.1 MT-CO3 pseudogene 6 2015-10-19 2016-07-21 2016-07-21 107403235 NG_046818 PGOHUM00000299086 +HGNC:52037 MTCO3P7 mitochondrially encoded cytochrome c oxidase III pseudogene 7 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-CO3 pseudogene 7 2015-10-19 2016-07-21 2016-07-21 107075150 ENSG00000249997 OTTHUMG00000153777 PGOHUM00000298697 +HGNC:52038 MTCO3P8 mitochondrially encoded cytochrome c oxidase III pseudogene 8 pseudogene pseudogene Approved 7q11.21 07q11.21 MT-CO3 pseudogene 8 2015-10-19 2016-07-21 2016-07-21 107075151 ENSG00000233385 OTTHUMG00000156470 NG_046490 PGOHUM00000302240 +HGNC:52039 MTCO3P9 mitochondrially encoded cytochrome c oxidase III pseudogene 9 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-CO3 pseudogene 9 2015-10-19 2016-07-21 2016-07-21 107075269 ENSG00000249698 OTTHUMG00000161819 NG_046491 PGOHUM00000300044 +HGNC:52040 MTCO3P10 mitochondrially encoded cytochrome c oxidase III pseudogene 10 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-CO3 pseudogene 10 2015-10-19 2016-07-21 2016-07-21 107075152 ENSG00000231537 OTTHUMG00000156676 NG_046468 PGOHUM00000302664 +HGNC:52041 MTCO3P11 mitochondrially encoded cytochrome c oxidase III pseudogene 11 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-CO3 pseudogene 11 2015-10-16 2016-07-21 2016-07-21 107075153 ENSG00000237711 OTTHUMG00000019479 PGOHUM00000304087 +HGNC:52042 MTCO3P12 mitochondrially encoded cytochrome c oxidase III pseudogene 12 pseudogene pseudogene Approved 1p36.33 01p36.33 MT-CO3 pseudogene 12 2015-10-19 2016-07-21 2016-07-21 107075270 ENSG00000198744 OTTHUMG00000002337 PGOHUM00000296180 +HGNC:52043 MTCO3P13 mitochondrially encoded cytochrome c oxidase III pseudogene 13 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-CO3 pseudogene 13 2015-10-19 2016-07-21 2016-07-21 107075224 ENSG00000264316 OTTHUMG00000179093 NG_046469 PGOHUM00000294353 +HGNC:52044 MTCO3P14 mitochondrially encoded cytochrome c oxidase III pseudogene 14 pseudogene pseudogene Approved 1p13.3 01p13.3 MT-CO3 pseudogene 14 2015-10-19 2016-07-21 2016-07-21 107403236 NG_046819 PGOHUM00000295776 +HGNC:52045 MTCO3P15 mitochondrially encoded cytochrome c oxidase III pseudogene 15 pseudogene pseudogene Approved 11q22.3 11q22.3 MT-CO3 pseudogene 15 2015-10-19 2016-07-21 2016-07-21 107075154 ENSG00000254895 OTTHUMG00000165942 NG_046470 PGOHUM00000290671 +HGNC:52046 MTCO3P16 mitochondrially encoded cytochrome c oxidase III pseudogene 16 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-CO3 pseudogene 16 2015-10-19 2016-07-21 2016-07-21 107075155 ENSG00000227736 OTTHUMG00000154756 NG_046471 PGOHUM00000298835 +HGNC:52047 MTCO3P17 mitochondrially encoded cytochrome c oxidase III pseudogene 17 pseudogene pseudogene Approved 2q33.2 02q33.2 MT-CO3 pseudogene 17 2015-10-19 2016-07-21 2016-07-21 107075271 ENSG00000237542 OTTHUMG00000154678 NG_046472 PGOHUM00000298847 +HGNC:52048 MTCO3P18 mitochondrially encoded cytochrome c oxidase III pseudogene 18 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-CO3 pseudogene 18 2015-10-19 2016-07-21 2016-07-21 107075215 ENSG00000227661 OTTHUMG00000153571 NG_046473 PGOHUM00000298134 +HGNC:52049 MTCO3P19 mitochondrially encoded cytochrome c oxidase III pseudogene 19 pseudogene pseudogene Approved Xq22.1 Xq22.1 MT-CO3 pseudogene 19 2015-10-19 2016-07-21 2016-07-21 107075156 ENSG00000224471 OTTHUMG00000022072 PGOHUM00000305226 +HGNC:52122 MTCO3P20 mitochondrially encoded cytochrome c oxidase III pseudogene 20 pseudogene pseudogene Approved 22q12.3 22q12.3 MT-CO3 pseudogene 20 2015-10-23 2016-07-21 2016-07-21 107075180 ENSG00000225557 OTTHUMG00000150635 NG_046474 PGOHUM00000297757 +HGNC:52083 MTCO3P21 mitochondrially encoded cytochrome c oxidase III pseudogene 21 pseudogene pseudogene Approved 1p22.1 01p22.1 MT-CO3 pseudogene 21 2015-10-21 2016-07-21 2016-07-21 107075162 ENSG00000232752 OTTHUMG00000010567 NG_046475 +HGNC:52125 MTCO3P22 mitochondrially encoded cytochrome c oxidase III pseudogene 22 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-CO3 pseudogene 22 2015-10-23 2016-07-21 2016-07-21 100289371 ENSG00000270388 OTTHUMG00000185132 NG_027708 PGOHUM00000300694 +HGNC:52126 MTCO3P23 mitochondrially encoded cytochrome c oxidase III pseudogene 23 pseudogene pseudogene Approved 15q21.3 15q21.3 MT-CO3 pseudogene 23 2015-10-23 2016-07-21 2016-07-21 107075182 ENSG00000259651 OTTHUMG00000171994 PGOHUM00000293249 +HGNC:52127 MTCO3P24 mitochondrially encoded cytochrome c oxidase III pseudogene 24 pseudogene pseudogene Approved 16p13.13 16p13.13 MT-CO3 pseudogene 24 2015-10-23 2016-07-21 2016-07-21 107075217 ENSG00000262158 OTTHUMG00000177350 PGOHUM00000293419 +HGNC:52128 MTCO3P25 mitochondrially encoded cytochrome c oxidase III pseudogene 25 pseudogene pseudogene Approved 11q14.1 11q14.1 MT-CO3 pseudogene 25 2015-10-23 2016-07-21 2016-07-21 107403240 NG_046821 PGOHUM00000291051 +HGNC:52129 MTCO3P26 mitochondrially encoded cytochrome c oxidase III pseudogene 26 pseudogene pseudogene Approved 21p11.2 21p11.2 MT-CO3 pseudogene 26 2015-10-23 2016-07-21 2016-07-21 107403241 NG_046822 PGOHUM00000297189 +HGNC:52130 MTCO3P27 mitochondrially encoded cytochrome c oxidase III pseudogene 27 pseudogene pseudogene Approved 4q13.1 04q13.1 MT-CO3 pseudogene 27 2015-10-23 2016-07-21 2016-07-21 107075183 ENSG00000251430 OTTHUMG00000162345 NG_046476 PGOHUM00000300227 +HGNC:52131 MTCO3P28 mitochondrially encoded cytochrome c oxidase III pseudogene 28 pseudogene pseudogene Approved 4q13.1 04q13.1 MT-CO3 pseudogene 28 2015-10-23 2016-07-21 2016-07-21 107075184 ENSG00000248328 OTTHUMG00000162344 NG_046477 PGOHUM00000299846 +HGNC:52132 MTCO3P29 mitochondrially encoded cytochrome c oxidase III pseudogene 29 pseudogene pseudogene Approved 9q22.31 09q22.31 MT-CO3 pseudogene 29 2015-10-23 2016-07-21 2016-07-21 107075185 ENSG00000228069 OTTHUMG00000020215 NG_046478 PGOHUM00000304383 +HGNC:52133 MTCO3P30 mitochondrially encoded cytochrome c oxidase III pseudogene 30 pseudogene pseudogene Approved 9p21.1 09p21.1 MT-CO3 pseudogene 30 2015-10-23 2016-07-21 2016-07-21 107075229 ENSG00000229080 OTTHUMG00000019737 NG_046479 PGOHUM00000304148 +HGNC:52134 MTCO3P31 mitochondrially encoded cytochrome c oxidase III pseudogene 31 pseudogene pseudogene Approved 6q25.2 06q25.2 MT-CO3 pseudogene 31 2015-10-23 2016-07-21 2016-07-21 107075186 ENSG00000217044 OTTHUMG00000015864 PGOHUM00000301997 +HGNC:52135 MTCO3P32 mitochondrially encoded cytochrome c oxidase III pseudogene 32 pseudogene pseudogene Approved 20q11.21 20q11.21 MT-CO3 pseudogene 32 2015-10-23 2016-07-21 2016-07-21 107436001 NG_046824 PGOHUM00000297101 +HGNC:52136 MTCO3P33 mitochondrially encoded cytochrome c oxidase III pseudogene 33 pseudogene pseudogene Approved 22p11.2 22p11.2 MT-CO3 pseudogene 33 2015-10-23 2016-07-21 2016-07-21 107436003 NG_046826 PGOHUM00000297404 +HGNC:52137 MTCO3P34 mitochondrially encoded cytochrome c oxidase III pseudogene 34 pseudogene pseudogene Approved 22p11.2 22p11.2 MT-CO3 pseudogene 34 2015-10-23 2016-07-21 2016-07-21 107436004 NG_046827 PGOHUM00000297587 +HGNC:52138 MTCO3P35 mitochondrially encoded cytochrome c oxidase III pseudogene 35 pseudogene pseudogene Approved 3q13.12 03q13.12 MT-CO3 pseudogene 35 2015-10-23 2016-07-21 2016-07-21 107075287 ENSG00000242836 OTTHUMG00000159147 PGOHUM00000299114 +HGNC:52139 MTCO3P36 mitochondrially encoded cytochrome c oxidase III pseudogene 36 pseudogene pseudogene Approved 9q13 09q13 MT-CO3 pseudogene 36 2015-10-23 2016-07-21 2016-07-21 107436006 NG_046828 PGOHUM00000303879 +HGNC:52140 MTCO3P37 mitochondrially encoded cytochrome c oxidase III pseudogene 37 pseudogene pseudogene Approved Yq11.21 Yq11.21 MT-CO3 pseudogene 37 2015-10-23 2016-07-21 2016-07-21 107436007 NG_046829 PGOHUM00000305469 +HGNC:52141 MTCO3P38 mitochondrially encoded cytochrome c oxidase III pseudogene 38 pseudogene pseudogene Approved 3q26.1 03q26.1 MT-CO3 pseudogene 38 2015-10-23 2016-07-21 2016-07-21 107075187 ENSG00000242456 OTTHUMG00000158211 NG_046480 PGOHUM00000299261 +HGNC:52142 MTCO3P39 mitochondrially encoded cytochrome c oxidase III pseudogene 39 pseudogene pseudogene Approved 4p11 04p11 MT-CO3 pseudogene 39 2015-10-23 2016-07-21 2016-07-21 107075313 ENSG00000268736 OTTHUMG00000163199 NG_046481 PGOHUM00000300201 +HGNC:52143 MTCO3P40 mitochondrially encoded cytochrome c oxidase III pseudogene 40 pseudogene pseudogene Approved 9q21.32 09q21.32 MT-CO3 pseudogene 40 2015-10-23 2016-07-21 2016-07-21 107075188 ENSG00000228046 OTTHUMG00000020095 NG_046483 PGOHUM00000303955 +HGNC:52144 MTCO3P41 mitochondrially encoded cytochrome c oxidase III pseudogene 41 pseudogene pseudogene Approved 7q11.22 07q11.22 MT-CO3 pseudogene 41 2015-10-23 2016-07-21 2016-07-21 107075288 ENSG00000237466 OTTHUMG00000156573 PGOHUM00000302788 +HGNC:52145 MTCO3P42 mitochondrially encoded cytochrome c oxidase III pseudogene 42 pseudogene pseudogene Approved 4p11 04p11 MT-CO3 pseudogene 42 2015-10-23 2016-07-21 2016-07-21 107075189 ENSG00000268391 OTTHUMG00000160595 NG_046484 PGOHUM00000299824 +HGNC:52146 MTCO3P43 mitochondrially encoded cytochrome c oxidase III pseudogene 43 pseudogene pseudogene Approved 2q14.2 02q14.2 MT-CO3 pseudogene 43 2015-10-23 2016-07-21 2016-07-21 107075190 ENSG00000227788 OTTHUMG00000154457 NG_046485 PGOHUM00000298664 +HGNC:52147 MTCO3P44 mitochondrially encoded cytochrome c oxidase III pseudogene 44 pseudogene pseudogene Approved 4p15.2 04p15.2 MT-CO3 pseudogene 44 2015-10-23 2016-07-21 2016-07-21 107075289 ENSG00000248654 OTTHUMG00000160338 NG_046486 PGOHUM00000299785 +HGNC:52148 MTCO3P45 mitochondrially encoded cytochrome c oxidase III pseudogene 45 pseudogene pseudogene Approved 2q11.1 02q11.1 MT-CO3 pseudogene 45 2015-10-23 2016-07-21 2016-07-21 107075218 ENSG00000232128 OTTHUMG00000155133 NG_046487 PGOHUM00000298555 +HGNC:52165 MTCO3P46 mitochondrially encoded cytochrome c oxidase III pseudogene 46 pseudogene pseudogene Approved 1q42.3 01q42.3 MT-CO3 pseudogene 46 2015-10-26 2016-07-21 2016-07-21 107075293 ENSG00000235761 OTTHUMG00000040741 NG_046488 PGOHUM00000296109 +HGNC:7423 MTCP1 mature T-cell proliferation 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "P13MTCP1|p8MTCP1" 1994-12-14 2015-08-25 4515 ENSG00000214827 OTTHUMG00000156241 uc065cjp.1 NM_001018025 CCDS44027 P56278 "8361760|8634440|9691281" MGI:102699 RGD:1561352 MTCP1 300116 +HGNC:7424 MTCSB1 mitochondrially encoded conserved sequence block I other region Approved mitochondria mitochondria conserved sequence block I 1989-10-11 2005-02-15 2007-06-18 +HGNC:7425 MTCSB2 mitochondrially encoded conserved sequence block II other region Approved mitochondria mitochondria conserved sequence block II 1989-10-11 2005-02-15 2007-06-18 +HGNC:7426 MTCSB3 mitochondrially encoded conserved sequence block III other region Approved mitochondria mitochondria conserved sequence block III 1989-10-11 2005-02-15 2007-06-18 +HGNC:38729 MTCYBP1 mitochondrially encoded cytochrome b pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 "MTCYB pseudogene 1|MT-CYB pseudogene 1" 2010-07-28 2016-07-20 2016-07-20 100499418 ENSG00000234179 OTTHUMG00000041271 NG_023458 PGOHUM00000305624 +HGNC:38807 MTCYBP2 mitochondrially encoded cytochrome b pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 "MTCYB pseudogene 2|MT-CYB pseudogene 2" 2010-08-05 2016-07-20 2016-07-20 100873168 ENSG00000217179 OTTHUMG00000036510 NG_032220 +HGNC:39579 MTCYBP3 mitochondrially encoded cytochrome b pseudogene 3 pseudogene pseudogene Approved 13q32.1 13q32.1 "MTCYB pseudogene 3|MT-CYB pseudogene 3" 2011-03-15 2016-07-20 2016-07-20 100873204 ENSG00000232373 OTTHUMG00000017221 NG_032321 PGOHUM00000292225 +HGNC:41923 MTCYBP4 mitochondrially encoded cytochrome b pseudogene 4 pseudogene pseudogene Approved 6q23.2 06q23.2 MT-CYB pseudogene 4 2011-05-19 2016-07-20 2016-07-20 100873169 ENSG00000220113 OTTHUMG00000015598 NG_032377 PGOHUM00000301953 +HGNC:51967 MTCYBP5 mitochondrially encoded cytochrome b pseudogene 5 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-CYB pseudogene 5 2015-10-13 2016-07-20 2016-07-22 107075125 ENSG00000234671 OTTHUMG00000156684 NG_046508 PGOHUM00000302678 +HGNC:51974 MTCYBP6 mitochondrially encoded cytochrome b pseudogene 6 pseudogene pseudogene Approved 7q31.2 07q31.2 MT-CYB pseudogene 6 2015-10-13 2016-07-20 2016-07-20 107075259 ENSG00000230605 OTTHUMG00000119095 +HGNC:51964 MTCYBP7 mitochondrially encoded cytochrome b pseudogene 7 pseudogene pseudogene Approved 2p12 02p12 MT-CYB pseudogene 7 2015-10-13 2016-07-20 2016-07-20 107075257 ENSG00000227789 OTTHUMG00000152962 NG_046509 PGOHUM00000298486 +HGNC:51965 MTCYBP8 mitochondrially encoded cytochrome b pseudogene 8 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-CYB pseudogene 8 2015-10-13 2016-07-20 2016-07-20 107075220 ENSG00000233550 OTTHUMG00000153774 NG_046510 PGOHUM00000298702 +HGNC:51966 MTCYBP9 mitochondrially encoded cytochrome b pseudogene 9 pseudogene pseudogene Approved 2q24.1 02q24.1 MT-CYB pseudogene 9 2015-10-13 2016-07-20 2016-07-20 107075124 ENSG00000229935 OTTHUMG00000153815 NG_046511 PGOHUM00000298765 +HGNC:51961 MTCYBP10 mitochondrially encoded cytochrome b pseudogene 10 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-CYB pseudogene 10 2015-10-13 2016-07-20 2016-07-20 107075121 ENSG00000233285 OTTHUMG00000153601 NG_046492 PGOHUM00000298129 +HGNC:51962 MTCYBP11 mitochondrially encoded cytochrome b pseudogene 11 pseudogene pseudogene Approved 2q22.2 02q22.2 MT-CYB pseudogene 11 2015-10-13 2016-07-20 2016-07-20 107075122 ENSG00000224288 OTTHUMG00000153818 NG_046493 PGOHUM00000298174 +HGNC:51963 MTCYBP12 mitochondrially encoded cytochrome b pseudogene 12 pseudogene pseudogene Approved Xp22.32 Xp22.32 MT-CYB pseudogene 12 2015-10-13 2016-07-20 2016-07-20 107075123 ENSG00000226313 OTTHUMG00000021090 NG_046494 PGOHUM00000304933 +HGNC:51975 MTCYBP13 mitochondrially encoded cytochrome b pseudogene 13 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-CYB pseudogene 13 2015-10-13 2016-07-20 2016-07-20 107075129 ENSG00000266529 OTTHUMG00000179067 NG_046495 PGOHUM00000294347 +HGNC:51960 MTCYBP14 mitochondrially encoded cytochrome b pseudogene 14 pseudogene pseudogene Approved 1q42.3 01q42.3 MT-CYB pseudogene 14 2015-10-13 2016-07-20 2016-07-20 107075120 ENSG00000238236 OTTHUMG00000040469 NG_046496 PGOHUM00000296819 +HGNC:51968 MTCYBP15 mitochondrially encoded cytochrome b pseudogene 15 pseudogene pseudogene Approved 1q43 01q43 MT-CYB pseudogene 15 2015-10-13 2016-07-20 2016-07-20 107075258 ENSG00000232154 OTTHUMG00000039591 NG_046497 PGOHUM00000296115 +HGNC:51969 MTCYBP16 mitochondrially encoded cytochrome b pseudogene 16 pseudogene pseudogene Approved 4q13.1 04q13.1 MT-CYB pseudogene 16 2015-10-13 2016-07-20 2016-07-20 107075126 ENSG00000251385 OTTHUMG00000162338 NG_046498 PGOHUM00000299844 +HGNC:51970 MTCYBP17 mitochondrially encoded cytochrome b pseudogene 17 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-CYB pseudogene 17 2015-10-13 2016-07-20 2016-07-20 107075213 ENSG00000249247 OTTHUMG00000161820 NG_046499 PGOHUM00000300039 +HGNC:51976 MTCYBP18 mitochondrially encoded cytochrome b pseudogene 18 pseudogene pseudogene Approved 5q31.1 05q31.1 MT-CYB pseudogene 18 2015-10-13 2016-07-20 2016-07-20 107075130 ENSG00000244921 OTTHUMG00000163073 NG_046500 PGOHUM00000300762 +HGNC:51971 MTCYBP19 mitochondrially encoded cytochrome b pseudogene 19 pseudogene pseudogene Approved 8p12 08p12 MT-CYB pseudogene 19 2015-10-13 2016-07-20 2016-07-20 107075127 ENSG00000253504 OTTHUMG00000163974 NG_046501 PGOHUM00000303158 +HGNC:51973 MTCYBP20 mitochondrially encoded cytochrome b pseudogene 20 pseudogene pseudogene Approved 8q11.1 08q11.1 MT-CYB pseudogene 20 2015-10-13 2016-07-20 2016-07-20 107075128 ENSG00000254118 OTTHUMG00000164133 NG_046502 PGOHUM00000303185 +HGNC:51977 MTCYBP21 mitochondrially encoded cytochrome b pseudogene 21 pseudogene pseudogene Approved 21q22.3 21q22.3 MT-CYB pseudogene 21 2015-10-13 2016-07-20 2016-07-20 107075260 ENSG00000224747 OTTHUMG00000040846 NG_046503 PGOHUM00000297273 +HGNC:51979 MTCYBP22 mitochondrially encoded cytochrome b pseudogene 22 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-CYB pseudogene 22 2015-10-13 2016-07-20 2016-07-20 107075221 ENSG00000270232 OTTHUMG00000185126 NG_046504 PGOHUM00000300689 +HGNC:51980 MTCYBP23 mitochondrially encoded cytochrome b pseudogene 23 pseudogene pseudogene Approved 15q21.3 15q21.3 MT-CYB pseudogene 23 2015-10-13 2016-07-20 2016-07-20 107075131 ENSG00000259671 OTTHUMG00000171999 PGOHUM00000293254 +HGNC:51983 MTCYBP24 mitochondrially encoded cytochrome b pseudogene 24 pseudogene pseudogene Approved 7q31.1 07q31.1 MT-CYB pseudogene 24 2015-10-13 2016-07-20 2016-07-20 107075132 ENSG00000236232 OTTHUMG00000155120 NG_046505 PGOHUM00000302898 +HGNC:51991 MTCYBP25 mitochondrially encoded cytochrome b pseudogene 25 pseudogene pseudogene Approved 11q14.1 11q14.1 MT-CYB pseudogene 25 2015-10-13 2016-07-20 2016-07-20 107403064 NG_046784 PGOHUM00000291056 +HGNC:51992 MTCYBP26 mitochondrially encoded cytochrome b pseudogene 26 pseudogene pseudogene Approved 12p11.21 12p11.21 MT-CYB pseudogene 26 2015-10-13 2016-07-20 2016-07-20 107403065 NG_046785 PGOHUM00000291603 +HGNC:51993 MTCYBP27 mitochondrially encoded cytochrome b pseudogene 27 pseudogene pseudogene Approved 14q31.2 14q31.2 MT-CYB pseudogene 27 2015-10-13 2016-07-20 2016-07-20 107075133 ENSG00000259012 OTTHUMG00000171377 PGOHUM00000292743 +HGNC:51994 MTCYBP28 mitochondrially encoded cytochrome b pseudogene 28 pseudogene pseudogene Approved 16q23.3 16q23.3 MT-CYB pseudogene 28 2015-10-13 2016-07-20 2016-07-20 107075134 ENSG00000260161 OTTHUMG00000176576 NG_046506 PGOHUM00000293670 +HGNC:51995 MTCYBP29 mitochondrially encoded cytochrome b pseudogene 29 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-CYB pseudogene 29 2015-10-13 2016-07-20 2016-07-20 107075135 ENSG00000224880 OTTHUMG00000156688 NG_046507 PGOHUM00000302668 +HGNC:51996 MTCYBP30 mitochondrially encoded cytochrome b pseudogene 30 pseudogene pseudogene Approved 8q13.2 08q13.2 MT-CYB pseudogene 30 2015-10-13 2016-07-20 2016-07-20 107403066 NG_046786 PGOHUM00000303234 +HGNC:51997 MTCYBP31 mitochondrially encoded cytochrome b pseudogene 31 pseudogene pseudogene Approved Xq13.1 Xq13.1 MT-CYB pseudogene 31 2015-10-13 2016-07-20 2016-07-20 107075136 ENSG00000226579 OTTHUMG00000021761 PGOHUM00000304683 +HGNC:52174 MTCYBP32 mitochondrially encoded cytochrome b pseudogene 32 pseudogene pseudogene Approved Xq22.1 Xq22.1 MT-CYB pseudogene 32 2015-10-28 2016-07-20 2016-07-20 107075231 ENSG00000229794 OTTHUMG00000022066 PGOHUM00000305229 +HGNC:52301 MTCYBP33 mitochondrially encoded cytochrome b pseudogene 33 pseudogene pseudogene Approved 16p13.13 16p13.13 2016-07-22 2016-07-22 ENSG00000263241 OTTHUMG00000177344 PGOHUM00000293414 +HGNC:52302 MTCYBP34 mitochondrially encoded cytochrome b pseudogene 34 pseudogene pseudogene Approved 22q12.3 22q12.3 2016-07-22 2016-07-22 ENSG00000237129 OTTHUMG00000150638 PGOHUM00000297758 +HGNC:52303 MTCYBP35 mitochondrially encoded cytochrome b pseudogene 35 pseudogene pseudogene Approved 5q15 05q15 2016-07-22 2016-07-22 ENSG00000251340 OTTHUMG00000162662 PGOHUM00000301056 +HGNC:52304 MTCYBP36 mitochondrially encoded cytochrome b pseudogene 36 pseudogene pseudogene Approved 6q16.1 06q16.1 2016-07-22 2016-07-22 ENSG00000216853 OTTHUMG00000015231 PGOHUM00000301478 +HGNC:52305 MTCYBP37 mitochondrially encoded cytochrome b pseudogene 37 pseudogene pseudogene Approved 5p15.31 05p15.31 2016-07-22 2016-07-22 ENSG00000248765 OTTHUMG00000161721 PGOHUM00000300866 +HGNC:52306 MTCYBP38 mitochondrially encoded cytochrome b pseudogene 38 pseudogene pseudogene Approved Xq25 Xq25 2016-07-22 2016-07-22 ENSG00000226414 OTTHUMG00000022354 PGOHUM00000305306 +HGNC:52307 MTCYBP39 mitochondrially encoded cytochrome b pseudogene 39 pseudogene pseudogene Approved 2q14.1 02q14.1 2016-07-22 2016-07-22 ENSG00000226341 OTTHUMG00000153306 PGOHUM00000298654 +HGNC:52308 MTCYBP40 mitochondrially encoded cytochrome b pseudogene 40 pseudogene pseudogene Approved 5q15 05q15 2016-07-22 2016-07-22 ENSG00000248931 OTTHUMG00000162798 PGOHUM00000300680 +HGNC:52309 MTCYBP41 mitochondrially encoded cytochrome b pseudogene 41 pseudogene pseudogene Approved 11q14.2 11q14.2 2016-07-22 2016-07-22 ENSG00000254650 OTTHUMG00000167257 PGOHUM00000290626 +HGNC:52310 MTCYBP42 mitochondrially encoded cytochrome b pseudogene 42 pseudogene pseudogene Approved 7p15.3 07p15.3 2016-07-22 2016-07-22 ENSG00000228803 OTTHUMG00000152545 PGOHUM00000302066 +HGNC:52311 MTCYBP43 mitochondrially encoded cytochrome b pseudogene 43 pseudogene pseudogene Approved 4p15.1 04p15.1 2016-07-22 2016-07-22 ENSG00000250624 OTTHUMG00000160366 PGOHUM00000299793 +HGNC:52312 MTCYBP44 mitochondrially encoded cytochrome b pseudogene 44 pseudogene pseudogene Approved 4q21.22 04q21.22 2016-07-22 2016-07-22 ENSG00000248282 OTTHUMG00000160938 PGOHUM00000299909 +HGNC:52313 MTCYBP45 mitochondrially encoded cytochrome b pseudogene 45 pseudogene pseudogene Approved 1p36.22 01p36.22 2016-07-22 2016-07-22 ENSG00000224338 OTTHUMG00000002073 PGOHUM00000295544 +HGNC:29608 MTDH metadherin protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "LYRIC|3D3|AEG-1" astrocyte elevated gene 1 2005-07-18 2014-11-19 92140 ENSG00000147649 OTTHUMG00000164692 uc003yhz.4 AF411226 XM_011517367 CCDS6274 Q86UE4 15093543 MGI:1914404 RGD:620992 MTDH 610323 +HGNC:52357 MTDHP1 metadherin pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 2016-07-28 2016-07-28 100418814 ENSG00000270948 OTTHUMG00000184712 NG_026479 PGOHUM00000302257 +HGNC:52358 MTDHP2 metadherin pseudogene 2 pseudogene pseudogene Approved 19p12 19p12 2016-07-28 2016-07-28 100418835 ENSG00000269615 OTTHUMG00000182900 NG_024246 +HGNC:52359 MTDHP3 metadherin pseudogene 3 pseudogene pseudogene Approved 19p12 19p12 2016-07-28 2016-07-28 100418832 ENSG00000268433 OTTHUMG00000182869 NG_024168 PGOHUM00000294941 +HGNC:52360 MTDHP4 metadherin pseudogene 4 pseudogene pseudogene Approved 19p12 19p12 2016-07-28 2016-07-28 100418834 ENSG00000268535 OTTHUMG00000182870 NG_024244 PGOHUM00000295284 +HGNC:52361 MTDHP5 metadherin pseudogene 5 pseudogene pseudogene Approved 19p12 19p12 2016-07-28 2016-07-28 100418836 ENSG00000269575 OTTHUMG00000182932 NG_024248 PGOHUM00000295291 +HGNC:21463 MTERF1 mitochondrial transcription termination factor 1 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 MTERF mitochondrial transcription termination factor 2005-06-27 2014-06-26 2014-06-26 2014-11-19 7978 ENSG00000127989 OTTHUMG00000156057 Y09615 NM_006980 "CCDS5621|CCDS75629" Q99551 "15899902|14744862|7681833" MGI:1340032 RGD:621318 602318 +HGNC:30779 MTERF2 mitochondrial transcription termination factor 2 protein-coding gene gene with protein product Approved 12q24.1 12q24.1 FLJ14062 MTERFD3 MTERF domain containing 3 2005-06-28 2014-06-26 2014-06-26 2014-06-26 80298 ENSG00000120832 NM_025198 CCDS9111 Q49AM1 "16193327|19366608" MGI:1921488 RGD:1311836 616929 +HGNC:24258 MTERF3 mitochondrial transcription termination factor 3 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "CGI-12|FLJ10939" MTERFD1 MTERF domain containing 1 2005-06-28 2014-06-26 2014-06-26 2014-11-19 51001 ENSG00000156469 OTTHUMG00000164713 NM_015942 "CCDS6270|CCDS75772" Q96E29 "10810093|16193327|17662942" MGI:1913660 RGD:735158 616930 +HGNC:28785 MTERF4 mitochondrial transcription termination factor 4 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 MGC61716 MTERFD2 MTERF domain containing 2 2005-06-28 2014-06-26 2014-06-26 2014-11-19 130916 ENSG00000122085 OTTHUMG00000133393 NM_182501 "CCDS2544|CCDS82584" Q7Z6M4 "16193327|21531335" MGI:1918355 RGD:1562440 615393 +HGNC:7428 MTF1 metal regulatory transcription factor 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 1994-11-01 2016-07-01 2016-10-05 4520 ENSG00000188786 OTTHUMG00000004439 uc001cce.1 BC014454 NM_005955 CCDS30676 Q14872 8065932 MGI:101786 RGD:1308956 MTF1 600172 +HGNC:29535 MTF2 metal response element binding transcription factor 2 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "M96|PCL2|TDRD19A" "polycomb-like 2|tudor domain containing 19A" "PHD finger proteins|Tudor domain containing" "88|780" 2005-05-24 2015-09-04 22823 ENSG00000143033 OTTHUMG00000010161 uc009wdj.4 AJ010014 NM_007358 "CCDS742|CCDS53340|CCDS53341" Q9Y483 15563832 MGI:105050 RGD:1304727 MTF2 609882 +HGNC:29666 MTFMT mitochondrial methionyl-tRNA formyltransferase protein-coding gene gene with protein product Approved 15q22.31 15q22.31 FMT1 2005-07-19 2005-08-09 2016-01-15 123263 ENSG00000103707 OTTHUMG00000172371 uc002aof.5 AK055688 NM_139242 CCDS45280 Q96DP5 9614118 MGI:1916856 RGD:1309462 MTFMT 611766 299657 2.1.2.9 +HGNC:26945 MTFP1 mitochondrial fission process 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "MTP18|HSPC242" 2010-09-02 2016-10-05 51537 ENSG00000242114 OTTHUMG00000151057 uc003ahw.3 AF151076 NM_016498 "CCDS33634|CCDS33635" Q9UDX5 "15155745|15985469" MGI:1916686 RGD:1359705 MTFP1 610235 +HGNC:29510 MTFR1 mitochondrial fission regulator 1 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 "CHPPR|KIAA0009|FAM54A2" likely ortholog of chicken chondrocyte protein with a poly proline region 2005-08-02 2012-11-30 9650 ENSG00000066855 OTTHUMG00000164468 uc003xvm.3 NM_014637 "CCDS6182|CCDS55240" Q15390 "7584026|7584028|15389597" MGI:1914722 RGD:1304936 MTFR1 +HGNC:28836 MTFR1L mitochondrial fission regulator 1 like protein-coding gene gene with protein product Approved 1p36.11 01p36.11 FAM54B "family with sequence similarity 54, member B|mitochondrial fission regulator 1-like" 2005-05-24 2012-11-29 2016-03-08 2016-03-08 56181 ENSG00000117640 OTTHUMG00000007377 uc001bkq.5 NM_019557 "CCDS41284|CCDS44089" Q9H019 "8619474|9110174" MGI:1924074 RGD:1305453 +HGNC:21115 MTFR2 mitochondrial fission regulator 2 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "DUFD1|FAM54A" "DUF729 domain containing 1|family with sequence similarity 54, member A" 2003-05-20 2012-11-29 2012-11-29 2016-10-05 113115 ENSG00000146410 OTTHUMG00000015643 uc003qgt.2 BC011716 NM_138419 CCDS5176 Q6P444 MGI:1919054 RGD:6494892 +HGNC:32159 MTG1 mitochondrial ribosome associated GTPase 1 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 GTPBP7 "GTP-binding protein 7|GTP-binding protein 7 (putative)|mitochondrial GTPase 1 homolog (S. cerevisiae)|mitochondrial ribosome-associated GTPase 1" 2005-08-15 2006-01-09 2016-04-05 2016-04-05 92170 ENSG00000148824 OTTHUMG00000166564 uc001lnd.4 NM_138384 CCDS31320 Q9BT17 "12808030|23396448" MGI:2685015 RGD:6497155 MTG1 +HGNC:16239 MTG2 mitochondrial ribosome associated GTPase 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FLJ10741|dJ1005F21.2|ObgH1" GTPBP5 "GTP-binding protein 5 (putative)|GTP binding protein 5 (putative)|mitochondrial ribosome-associated GTPase 2" 2001-07-17 2013-05-24 2016-04-05 2016-04-05 26164 ENSG00000101181 OTTHUMG00000032897 AK001603 NM_015666 CCDS13492 Q9H4K7 "17054726|23396448" MGI:106565 RGD:1359243 610919 +HGNC:7432 MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "MTHFC|MTHFD" methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1, methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthetase Minor histocompatibility antigens 870 1999-07-23 2016-05-03 2016-10-05 4522 ENSG00000100714 OTTHUMG00000141309 uc001xhb.4 J04031 NM_005956 CCDS9763 P11586 "3053686|2786332" MGI:1342005 RGD:708531 MTHFD1 172460 138561 "1.5.1.5|3.5.4.9|6.3.4.3" +HGNC:21055 MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "DKFZP586G1517|FLJ21145" "10-formyl-THF synthetase|mitochondrial C1-tetrahydrofolate synthase|monofunctional C1-tetrahydrofolate synthase, mitochondrial" FTHFSDC1 formyltetrahydrofolate synthetase domain containing 1 2003-05-27 2004-12-14 2004-12-13 2014-11-19 25902 ENSG00000120254 OTTHUMG00000015828 uc003qob.4 BC017477 NM_015440 "CCDS5228|CCDS56457|CCDS75535|CCDS75536" Q6UB35 18804703 MGI:1924836 RGD:1307311 MTHFD1L 611427 6.3.4.3 +HGNC:7433 MTHFD1P1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 pseudogene 1 pseudogene pseudogene Approved Xp11.21 Xp11.21 "MTHFDL1|MTHFDP1" 1999-07-23 2012-02-29 4523 ENSG00000231831 OTTHUMG00000021683 S57009 NG_026706 1916813 PGOHUM00000261943 +HGNC:7434 MTHFD2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding gene gene with protein product Approved 2p13.1 02p13.1 1999-07-23 2015-09-04 10797 ENSG00000065911 OTTHUMG00000129814 uc002skk.4 X16396 NR_027405 CCDS1935 P13995 "2587219|8218174" MGI:1338850 RGD:1311313 MTHFD2 604887 +HGNC:31865 MTHFD2L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like protein-coding gene gene with protein product Approved 4q13.3 04q13.3 MGC72244 2004-12-13 2015-09-04 441024 ENSG00000163738 OTTHUMG00000157135 uc011cbk.3 BC065771 NM_001004346 CCDS47075 Q9H903 21163947 MGI:1915871 RGD:1310879 MTHFD2L 614047 +HGNC:48859 MTHFD2P1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudogene pseudogene Approved 3q11.2 03q11.2 2013-06-19 2013-06-19 100287639 ENSG00000244681 OTTHUMG00000159027 NR_077228 PGOHUM00000237687 +HGNC:48860 MTHFD2P2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 2 pseudogene pseudogene Approved 6q14.3 06q14.3 2013-06-19 2013-06-19 106480237 ENSG00000217169 OTTHUMG00000015158 NG_043785 PGOHUM00000243280 +HGNC:48866 MTHFD2P3 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 3 pseudogene pseudogene Approved 6q21 06q21 2013-06-19 2013-06-19 106481665 ENSG00000231112 OTTHUMG00000015315 NG_042914 PGOHUM00000243315 +HGNC:48862 MTHFD2P4 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 4 pseudogene pseudogene Approved 4q32.2 04q32.2 2013-06-19 2013-06-19 100131135 ENSG00000251253 OTTHUMG00000161389 NG_022088 PGOHUM00000259960 +HGNC:48863 MTHFD2P5 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 5 pseudogene pseudogene Approved 7q21.11 07q21.11 2013-06-19 2013-06-19 442707 ENSG00000213530 OTTHUMG00000154816 NG_005547 PGOHUM00000232904 +HGNC:48864 MTHFD2P6 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 6 pseudogene pseudogene Approved 5p13.1 05p13.1 2013-06-19 2013-06-19 100130042 ENSG00000249266 OTTHUMG00000162085 NG_021846 PGOHUM00000235204 +HGNC:48865 MTHFD2P7 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 7 pseudogene pseudogene Approved 3q26.33 03q26.33 2013-06-19 2013-06-19 442098 ENSG00000181260 OTTHUMG00000157481 NG_022282 PGOHUM00000238276 +HGNC:7436 MTHFR methylenetetrahydrofolate reductase protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "5,10-methylenetetrahydrofolate reductase (NADPH)|methylenetetrahydrofolate reductase (NAD(P)H)" 1994-07-15 2016-08-10 2016-10-12 4524 ENSG00000177000 OTTHUMG00000002277 uc001atc.3 BC053509 NM_005957 "CCDS137|CCDS81262" P42898 7920641 MGI:106639 RGD:1309952 LRG_726|http://www.lrg-sequence.org/LRG/LRG_726 MTHFR 607093 123529 1.5.1.20 +HGNC:7437 MTHFS 5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase) protein-coding gene gene with protein product Approved 15q25.1 15q25.1 HsT19268 1999-07-09 2016-10-05 10588 ENSG00000136371 OTTHUMG00000144174 uc002bex.5 L38928 NM_006441 CCDS10311 P49914 8522195 MGI:1340032 RGD:1306876 MTHFS 604197 6.3.3.2 +HGNC:25778 MTHFSD methenyltetrahydrofolate synthetase domain containing protein-coding gene gene with protein product Approved 16q24.1 16q24.1 FLJ12998 RNA binding motif containing 725 2006-04-07 2014-11-19 64779 ENSG00000103248 OTTHUMG00000176480 uc010vor.3 AK023060 NM_022764 "CCDS54047|CCDS54048|CCDS58490|CCDS42211" Q2M296 12477932 MGI:2679252 RGD:1584226 MTHFSD 616820 +HGNC:7438 MTHPR mitochondrially encoded replication primer other region Approved mitochondria mitochondria replication primer 1989-10-11 2005-02-15 2008-08-27 +HGNC:7439 MTHSP1 mitochondrially encoded major H-strand promoter other region Approved mitochondria mitochondria major H-strand promoter 1989-10-11 2005-02-15 2008-08-27 +HGNC:7440 MTHSP2 mitochondrially encoded minor H-strand promoter other region Approved mitochondria mitochondria minor H-strand promoter 1989-10-12 2005-02-15 2008-08-27 +HGNC:7441 MTIF2 mitochondrial translational initiation factor 2 protein-coding gene gene with protein product Approved 2p16.1 02p16.1 IF-2mt 1998-06-25 2014-11-19 4528 ENSG00000085760 OTTHUMG00000129338 uc061jgd.1 L34600 NM_002453 CCDS1853 P46199 "9925935|7829522" MGI:1924034 RGD:1303046 MTIF2 603766 +HGNC:14861 MTIF2P1 mitochondrial translational initiation factor 2 pseudogene 1 pseudogene pseudogene Approved 1p11.2 01p11.2 2001-03-14 2006-04-04 80713 AY091592 NG_002684 12932832 +HGNC:29788 MTIF3 mitochondrial translational initiation factor 3 protein-coding gene gene with protein product Approved 13q12.2 13q12.2 "IF-3mt|IF3(mt)" 2006-11-03 2014-11-19 219402 ENSG00000122033 OTTHUMG00000016633 uc001urj.4 BC046166 NM_152912 CCDS9322 Q9H2K0 12095986 MGI:1923616 RGD:1592673 MTIF3 +HGNC:7444 MTL3P metallothionein-like 3, pseudogene pseudogene pseudogene Approved 18q22.1 18q22.1 MTL3 metallothionein-like 3 2001-06-22 2010-10-21 2010-10-21 2014-11-19 4531 NG_032177 +HGNC:7447 MTLSP mitochondrially encoded L-strand promoter other region Approved mitochondria mitochondria L-strand promoter 1989-10-11 2005-02-15 2008-08-27 +HGNC:7448 MTM1 myotubularin 1 protein-coding gene gene with protein product Approved Xq28 Xq28 myotubular myopathy 1 "Myotubularins|Phosphoinositide phosphatases" "903|1079" 2001-06-22 2016-10-12 4534 ENSG00000171100 OTTHUMG00000024158 uc004fef.5 U46024 NM_000252 CCDS14694 Q13496 MGI:1099452 RGD:1304582 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=MTM1|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MTM1|LRG_839|http://www.lrg-sequence.org/LRG/LRG_839" MTM1 300415 123531 3.1.3.64 +HGNC:7449 MTMR1 myotubularin related protein 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "Myotubularins|Phosphoinositide phosphatases" "903|1079" 1998-12-16 2014-11-18 8776 ENSG00000063601 OTTHUMG00000024159 uc004fei.4 U58032 "NM_003828|NM_176789" "CCDS14695|CCDS78512|CCDS78513" Q13613 9828128 MGI:1858271 RGD:1306569 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MTMR1 MTMR1 300171 +HGNC:7450 MTMR2 myotubularin related protein 2 protein-coding gene gene with protein product Approved 11q21 11q21 KIAA1073 "phosphatidylinositol-3-phosphatase|phosphoinositide-3-phosphatase" CMT4B "Myotubularins|Phosphoinositide phosphatases" "903|1079" 1999-02-05 2016-10-12 8898 ENSG00000087053 OTTHUMG00000153837 uc001pfu.4 U58033 NM_016156 "CCDS8305|CCDS8306" Q13614 "8640223|9736772" MGI:1924366 RGD:1311865 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_257|http://www.lrg-sequence.org/LRG/LRG_257" MTMR2 603557 123533 3.1.3.64 +HGNC:7451 MTMR3 myotubularin related protein 3 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "KIAA0371|ZFYVE10|FYVE-DSP1" "Zinc fingers FYVE-type|Myotubularins|Phosphoinositide phosphatases" "81|903|1079" 1999-02-05 2014-11-19 8897 ENSG00000100330 OTTHUMG00000151278 uc003agv.5 U58034 NM_021090 "CCDS13870|CCDS13871|CCDS46682" Q13615 "8640223|9736772" MGI:1921552 RGD:1310972 MTMR3 603558 +HGNC:7452 MTMR4 myotubularin related protein 4 protein-coding gene gene with protein product Approved 17q22 17q22 "KIAA0647|ZFYVE11" "Zinc fingers FYVE-type|Myotubularins|Phosphoinositide phosphatases" "81|903|1079" 1999-02-05 2014-12-02 9110 ENSG00000108389 OTTHUMG00000179079 uc002iwj.3 AB014547 NM_004687 CCDS11608 Q9NYA4 9736772 MGI:2180699 RGD:1310306 MTMR4 603559 +HGNC:7453 MTMR6 myotubularin related protein 6 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 "Myotubularins|Phosphoinositide phosphatases" "903|1079" 1999-02-05 2016-10-05 9107 ENSG00000139505 OTTHUMG00000016606 uc001uqf.6 AF072928 NM_004685 CCDS9313 Q9Y217 9736772 MGI:2145637 RGD:1305378 MTMR6 603561 +HGNC:7454 MTMR7 myotubularin related protein 7 protein-coding gene gene with protein product Approved 8p22 08p22 "Myotubularins|Phosphoinositide phosphatases" "903|1079" 1999-02-05 2014-11-19 9108 ENSG00000003987 OTTHUMG00000163771 uc003wxm.4 AF073482 NM_004686 CCDS34851 Q9Y216 "9736772|12890864" MGI:1891693 RGD:1306608 MTMR7 603562 +HGNC:16825 MTMR8 myotubularin related protein 8 protein-coding gene gene with protein product Approved Xq11.2 Xq11.2 FLJ20126 "Myotubularins|Phosphoinositide phosphatases" "903|1079" 2002-09-05 2015-09-04 55613 ENSG00000102043 OTTHUMG00000021707 uc004dvs.4 AK000133 NM_017677 CCDS14379 Q96EF0 11275328 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MTMR8 MTMR8 +HGNC:14596 MTMR9 myotubularin related protein 9 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "DKFZp434K171|LIP-STYX" "C8orf9|MTMR8" myotubularin related protein 8 Myotubularins 903 2001-02-14 2002-09-06 2002-09-05 2016-10-05 66036 ENSG00000104643 OTTHUMG00000090647 uc003wtm.4 AJ297823 NM_015458 CCDS5979 Q96QG7 "11472061|11896452|12890864" MGI:2442842 RGD:628840 MTMR9 606260 +HGNC:27920 MTMR9LP myotubularin related protein 9-like, pseudogene pseudogene pseudogene Approved 1p35.2 01p35.2 MTMR9L myotubularin related protein 9-like 2009-07-09 2010-10-28 2010-04-29 2016-10-05 339483 ENSG00000220785 OTTHUMG00000007461 NR_026850 12477932 +HGNC:25999 MTMR10 myotubularin related protein 10 protein-coding gene gene with protein product Approved 15q13.3 15q13.3 FLJ20313 Myotubularins 903 2005-04-07 2011-06-09 54893 ENSG00000166912 OTTHUMG00000175662 uc001zfh.1 AK000320 NM_017762 CCDS45204 Q9NXD2 12495846 MGI:2142292 RGD:1305958 MTMR10 +HGNC:24307 MTMR11 myotubularin related protein 11 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 CRA cisplatin resistance associated Myotubularins 903 2005-04-07 2014-12-02 10903 ENSG00000014914 OTTHUMG00000012207 uc001etl.5 AK097000 NM_181873 "CCDS72901|CCDS72902" A4FU01 12495846 MGI:2652817 RGD:1589965 MTMR11 +HGNC:18191 MTMR12 myotubularin related protein 12 protein-coding gene gene with protein product Approved 5p13.3 05p13.3 "3-PAP|FLJ20476|KIAA1682|3PAP" PIP3AP phosphatidylinositol-3-phosphate associated protein Myotubularins 903 2003-09-26 2005-04-07 2005-04-07 2016-10-05 54545 ENSG00000150712 OTTHUMG00000161978 uc003jhq.4 AB051469 NM_019061 "CCDS34138|CCDS75230|CCDS77998" Q9C0I1 "11504939|12495846" MGI:2443034 RGD:1307902 MTMR12 606501 +HGNC:26190 MTMR14 myotubularin related protein 14 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "FLJ22405|FLJ90311|hJumpy|hEDTP" egg-derived tyrosine phosphatase homolog (Drosophila) C3orf29 chromosome 3 open reading frame 29 "Myotubularins|Phosphoinositide phosphatases" "903|1079" 2005-12-22 2006-12-18 2006-12-18 2016-10-05 64419 ENSG00000163719 OTTHUMG00000155111 uc003brz.4 BC001674 NM_022485 "CCDS43043|CCDS43044|CCDS43045" Q8NCE2 15186772 MGI:1916075 RGD:1304842 MTMR14 611089 139178 +HGNC:38728 MTND1P1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 "MTND1 pseudogene 1|MT-ND1 pseudogene 1" 2010-07-28 2015-11-20 2015-11-20 100499468 ENSG00000226529 OTTHUMG00000041272 NG_023506 +HGNC:42051 MTND1P2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 MT-ND1 pseudogene 2 2011-06-01 2015-11-20 2015-11-20 100873170 ENSG00000235646 OTTHUMG00000156488 NG_032397 PGOHUM00000302245 +HGNC:42052 MTND1P3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 3 pseudogene pseudogene Approved 7q34 07q34 MT-ND1 pseudogene 3 2011-06-01 2015-11-20 2015-11-20 100288984 ENSG00000239648 OTTHUMG00000157635 NG_029083 PGOHUM00000302453 +HGNC:42053 MTND1P4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 4 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-ND1 pseudogene 4 2011-06-01 2015-11-20 2015-11-20 100873171 ENSG00000230764 OTTHUMG00000156687 NG_032398 PGOHUM00000302669 +HGNC:42104 MTND1P5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 5 pseudogene pseudogene Approved 8q22.3 08q22.3 MT-ND1 pseudogene 5 2011-06-01 2015-11-20 2015-11-20 100873174 ENSG00000253795 OTTHUMG00000164801 NG_032418 PGOHUM00000303645 +HGNC:42103 MTND1P6 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 6 pseudogene pseudogene Approved 8p12 08p12 MT-ND1 pseudogene 6 2011-06-01 2015-11-20 2015-11-20 100873173 ENSG00000254346 OTTHUMG00000163931 NG_032417 PGOHUM00000303499 +HGNC:42102 MTND1P7 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 7 pseudogene pseudogene Approved 8q11.1 08q11.1 MT-ND1 pseudogene 7 2011-06-01 2015-11-20 2015-11-20 100873172 ENSG00000282321 OTTHUMG00000191367 NG_032416 PGOHUM00000303184 +HGNC:42100 MTND1P8 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 8 pseudogene pseudogene Approved 16p13.3 16p13.3 MT-ND1 pseudogene 8 2011-06-01 2015-11-20 2015-11-20 100287461 ENSG00000263177 OTTHUMG00000177598 NG_029090 PGOHUM00000293405 +HGNC:42099 MTND1P9 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 9 pseudogene pseudogene Approved 20q13.31 20q13.31 MT-ND1 pseudogene 9 2011-06-01 2015-11-20 2015-11-20 100873221 ENSG00000228995 OTTHUMG00000032816 NG_032415 PGOHUM00000297025 +HGNC:42097 MTND1P10 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 10 pseudogene pseudogene Approved 22q12.3 22q12.3 MT-ND1 pseudogene 10 2011-06-01 2015-11-20 2015-11-20 100873343 ENSG00000229088 OTTHUMG00000150637 NG_032414 PGOHUM00000297759 +HGNC:42060 MTND1P11 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 11 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-ND1 pseudogene 11 2011-06-01 2015-11-20 2015-11-20 100873212 ENSG00000228166 OTTHUMG00000019492 NG_032399 PGOHUM00000304082 +HGNC:42061 MTND1P12 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 12 pseudogene pseudogene Approved Yq11.21 Yq11.21 MT-ND1 pseudogene 12 2011-06-01 2015-11-20 2016-07-20 106480744 ENSG00000225433 OTTHUMG00000188087 NG_043748 PGOHUM00000305475 +HGNC:42096 MTND1P13 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 13 pseudogene pseudogene Approved 22q11.23 alternate reference locus 22q11.23 alternate reference locus MT-ND1 pseudogene 13 2011-06-01 2015-11-20 2015-11-20 100887745 KI270879 NG_032764 PGOHUM00000246532 +HGNC:42063 MTND1P14 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 14 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-ND1 pseudogene 14 2011-06-01 2015-11-20 2015-11-20 100873337 ENSG00000227225 OTTHUMG00000059467 NG_032400 PGOHUM00000294311 +HGNC:42064 MTND1P15 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 15 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-ND1 pseudogene 15 2011-06-01 2015-11-20 2015-11-20 100288998 ENSG00000264168 OTTHUMG00000179069 NG_029089 PGOHUM00000294348 +HGNC:42065 MTND1P16 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 16 pseudogene pseudogene Approved 3q13.12 03q13.12 MT-ND1 pseudogene 16 2011-06-01 2015-11-20 2015-11-20 100873213 ENSG00000239586 OTTHUMG00000159141 NG_032401 PGOHUM00000299528 +HGNC:42095 MTND1P17 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 17 pseudogene pseudogene Approved 22q11.1 22q11.1 MT-ND1 pseudogene 17 2011-06-01 2015-11-20 2015-11-20 100873342 ENSG00000228122 OTTHUMG00000147347 NG_032413 PGOHUM00000297434 +HGNC:42067 MTND1P18 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 18 pseudogene pseudogene Approved 10p11.21 10p11.21 MT-ND1 pseudogene 18 2011-06-01 2015-11-20 2015-11-20 100873338 ENSG00000225276 OTTHUMG00000017975 NG_032402 PGOHUM00000289796 +HGNC:42094 MTND1P19 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 19 pseudogene pseudogene Approved 4q22.1 04q22.1 MT-ND1 pseudogene 19 2011-06-01 2015-11-20 2015-11-20 100873220 ENSG00000251449 OTTHUMG00000160924 NG_032412 PGOHUM00000300293 +HGNC:42069 MTND1P20 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 20 pseudogene pseudogene Approved 10q22.1 10q22.1 MT-ND1 pseudogene 20 2011-06-01 2015-11-20 2015-11-20 100873339 ENSG00000226794 OTTHUMG00000018385 NG_032403 PGOHUM00000289895 +HGNC:42070 MTND1P21 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 21 pseudogene pseudogene Approved 10p12.31 10p12.31 MT-ND1 pseudogene 21 2011-06-01 2015-11-20 2015-11-20 100873340 ENSG00000235940 OTTHUMG00000017784 NG_032404 PGOHUM00000290058 +HGNC:42093 MTND1P22 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 22 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-ND1 pseudogene 22 2011-06-01 2015-11-20 2016-07-20 100287591 ENSG00000251407 OTTHUMG00000161807 NG_029085 PGOHUM00000300049 +HGNC:42092 MTND1P23 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 23 pseudogene pseudogene Approved 1p36.33 01p36.33 MT-ND1 pseudogene 23 2011-06-01 2015-11-20 2015-11-20 100887749 ENSG00000225972 OTTHUMG00000002338 NG_032769 PGOHUM00000296175 +HGNC:42073 MTND1P24 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 24 pseudogene pseudogene Approved 12q12 12q12 MT-ND1 pseudogene 24 2011-06-01 2015-11-20 2015-11-20 100873341 ENSG00000257858 OTTHUMG00000169367 NG_032405 PGOHUM00000291305 +HGNC:42091 MTND1P25 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 25 pseudogene pseudogene Approved 1q43 01q43 MT-ND1 pseudogene 25 2011-06-01 2015-11-20 2015-11-20 100288950 NG_008799 PGOHUM00000296114 +HGNC:42075 MTND1P26 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 26 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND1 pseudogene 26 2011-06-01 2015-11-20 2015-11-20 100873214 ENSG00000234576 OTTHUMG00000153566 NG_032406 PGOHUM00000298139 +HGNC:42076 MTND1P27 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 27 pseudogene pseudogene Approved 2q22.1 02q22.1 MT-ND1 pseudogene 27 2011-06-01 2015-11-20 2015-11-20 100288227 ENSG00000223921 OTTHUMG00000153662 NG_029086 PGOHUM00000298169 +HGNC:42077 MTND1P28 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 28 pseudogene pseudogene Approved 2q14.1 02q14.1 MT-ND1 pseudogene 28 2011-06-01 2015-11-20 2015-11-20 100873215 ENSG00000230158 OTTHUMG00000153403 NG_032407 PGOHUM00000298656 +HGNC:42078 MTND1P29 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 29 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND1 pseudogene 29 2011-06-01 2015-11-20 2015-11-20 100873216 ENSG00000237722 OTTHUMG00000153776 NG_032408 PGOHUM00000298692 +HGNC:42079 MTND1P30 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 30 pseudogene pseudogene Approved Xp11.21 Xp11.21 MT-ND1 pseudogene 30 2011-06-01 2015-11-20 2015-11-20 100507157 ENSG00000238047 OTTHUMG00000021652 NG_029084 PGOHUM00000304647 +HGNC:42080 MTND1P31 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 31 pseudogene pseudogene Approved Xq11.1 Xq11.1 MT-ND1 pseudogene 31 2011-06-01 2015-11-20 2015-11-20 100873217 ENSG00000235170 OTTHUMG00000021692 NG_032409 PGOHUM00000305101 +HGNC:42081 MTND1P32 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 32 pseudogene pseudogene Approved Xq22.1 Xq22.1 MT-ND1 pseudogene 32 2011-06-01 2015-11-20 2015-11-20 100856881 ENSG00000232282 OTTHUMG00000022067 NG_031905 PGOHUM00000305222 +HGNC:42082 MTND1P33 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 33 pseudogene pseudogene Approved Xq27.3 Xq27.3 MT-ND1 pseudogene 33 2011-06-01 2015-11-20 2015-11-20 100873218 ENSG00000235539 OTTHUMG00000022577 NG_032410 PGOHUM00000305369 +HGNC:42090 MTND1P34 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 34 pseudogene pseudogene Approved 1p33 01p33 MT-ND1 pseudogene 34 2011-06-01 2015-11-20 2015-11-20 100873219 ENSG00000225514 OTTHUMG00000007846 NG_032411 PGOHUM00000295662 +HGNC:42088 MTND1P35 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 35 pseudogene pseudogene Approved 11q14.3 11q14.3 MT-ND1 pseudogene 35 2011-06-01 2015-11-20 2015-11-20 106480433 ENSG00000255055 OTTHUMG00000167642 NG_043320 PGOHUM00000291086 +HGNC:42086 MTND1P36 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 36 pseudogene pseudogene Approved 11q22.3 11q22.3 MT-ND1 pseudogene 36 2011-06-01 2015-11-20 2015-11-20 100506721 ENSG00000253245 OTTHUMG00000165948 NG_029088 PGOHUM00000290676 +HGNC:52314 MTND1P37 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 pseudogene 37 pseudogene pseudogene Approved 10p12.31 10p12.31 2016-07-22 2016-07-22 ENSG00000283456 OTTHUMG00000191733 PGOHUM00000289759 +HGNC:7457 MTND2P1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 "NADH dehydrogenase 2 pseudogene 1|MTND2 pseudogene 1|MT-ND2 pseudogene 1" 2000-06-16 2015-11-20 2015-11-20 387315 NG_011402 PGOHUM00000297256 +HGNC:23767 MTND2P2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 2 pseudogene pseudogene Approved Xq22.1 Xq22.1 "NADH dehydrogenase 2 pseudogene 2|MTND2 pseudogene 2|MT-ND2 pseudogene 2" 2003-12-10 2015-11-20 2015-11-20 56168 ENSG00000229954 OTTHUMG00000022068 NG_002320 +HGNC:38727 MTND2P3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 3 pseudogene pseudogene Approved Yp11.2 Yp11.2 "MTND2 pseudogene 3|MT-ND2 pseudogene 3" 2010-07-28 2015-11-20 2015-11-20 100499457 ENSG00000234850 OTTHUMG00000041273 NG_023505 +HGNC:42105 MTND2P4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 4 pseudogene pseudogene Approved 7q11.21 07q11.21 MT-ND2 pseudogene 4 2011-06-02 2015-11-20 2015-11-20 100873175 ENSG00000230252 OTTHUMG00000156475 NG_032419 PGOHUM00000302244 +HGNC:42106 MTND2P5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 5 pseudogene pseudogene Approved 7q34 07q34 MT-ND2 pseudogene 5 2011-06-02 2015-11-20 2015-11-20 100873176 ENSG00000224354 OTTHUMG00000157636 NG_032420 PGOHUM00000302452 +HGNC:42107 MTND2P6 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 6 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-ND2 pseudogene 6 2011-06-02 2015-11-20 2015-11-20 100873177 ENSG00000237309 OTTHUMG00000156691 NG_032421 PGOHUM00000302670 +HGNC:42141 MTND2P7 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 7 pseudogene pseudogene Approved 8q24.22 08q24.22 MT-ND2 pseudogene 7 2011-06-02 2015-11-20 2015-11-20 100873179 ENSG00000253970 OTTHUMG00000164535 NG_032446 PGOHUM00000303686 +HGNC:42109 MTND2P8 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 8 pseudogene pseudogene Approved 9q21.31 09q21.31 MT-ND2 pseudogene 8 2011-06-02 2015-11-20 2015-11-20 100873178 ENSG00000237257 OTTHUMG00000020067 NG_032422 PGOHUM00000303947 +HGNC:42110 MTND2P9 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 9 pseudogene pseudogene Approved 9q21.31 09q21.31 MT-ND2 pseudogene 9 2011-06-02 2015-11-20 2015-11-20 100884155 ENSG00000225901 OTTHUMG00000020077 NG_032653 PGOHUM00000303951 +HGNC:42140 MTND2P10 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 10 pseudogene pseudogene Approved 8q22.3 08q22.3 MT-ND2 pseudogene 10 2011-06-02 2015-11-20 2015-11-20 100873238 NG_032445 PGOHUM00000303646 +HGNC:42112 MTND2P11 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 11 pseudogene pseudogene Approved 9q31.3 09q31.3 MT-ND2 pseudogene 11 2011-06-02 2015-11-20 2015-11-20 100873222 ENSG00000237124 OTTHUMG00000020471 NG_032423 PGOHUM00000304441 +HGNC:42113 MTND2P12 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 12 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-ND2 pseudogene 12 2011-06-02 2015-11-20 2015-11-20 100873344 ENSG00000228725 OTTHUMG00000059468 NG_032424 PGOHUM00000294312 +HGNC:42114 MTND2P13 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 13 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-ND2 pseudogene 13 2011-06-02 2015-11-20 2015-11-20 100873345 ENSG00000263914 OTTHUMG00000179070 NG_032425 PGOHUM00000294349 +HGNC:42115 MTND2P14 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 14 pseudogene pseudogene Approved 3q13.12 03q13.12 MT-ND2 pseudogene 14 2011-06-02 2015-11-20 2015-11-20 100873223 ENSG00000240796 OTTHUMG00000159142 NG_032426 PGOHUM00000299529 +HGNC:42116 MTND2P15 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 15 pseudogene pseudogene Approved 10q22.1 10q22.1 MT-ND2 pseudogene 15 2011-06-02 2015-11-20 2015-11-20 100873346 ENSG00000231152 OTTHUMG00000018386 NG_032427 PGOHUM00000289894 +HGNC:42117 MTND2P16 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 16 pseudogene pseudogene Approved 10p12.31 10p12.31 MT-ND2 pseudogene 16 2011-06-02 2015-11-20 2015-11-20 100873347 ENSG00000230818 OTTHUMG00000017778 NG_032428 PGOHUM00000290055 +HGNC:42118 MTND2P17 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 17 pseudogene pseudogene Approved 12q12 12q12 MT-ND2 pseudogene 17 2011-06-02 2015-11-20 2015-11-20 100873348 ENSG00000258239 OTTHUMG00000169366 NG_032429 PGOHUM00000291304 +HGNC:42119 MTND2P18 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 18 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND2 pseudogene 18 2011-06-02 2015-11-20 2015-11-20 100873224 ENSG00000234939 OTTHUMG00000153597 NG_032430 PGOHUM00000298138 +HGNC:42120 MTND2P19 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 19 pseudogene pseudogene Approved 2q22.1 02q22.1 MT-ND2 pseudogene 19 2011-06-02 2015-11-20 2015-11-20 100873225 ENSG00000231567 OTTHUMG00000153661 NG_032431 PGOHUM00000298168 +HGNC:42121 MTND2P20 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 20 pseudogene pseudogene Approved 2q24.1 02q24.1 MT-ND2 pseudogene 20 2011-06-02 2015-11-20 2015-11-20 100873226 ENSG00000229701 OTTHUMG00000153817 NG_032432 PGOHUM00000298196 +HGNC:42122 MTND2P21 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 21 pseudogene pseudogene Approved 2q14.1 02q14.1 MT-ND2 pseudogene 21 2011-06-02 2015-11-20 2015-11-20 100873227 ENSG00000230950 OTTHUMG00000153401 NG_032433 PGOHUM00000298657 +HGNC:42123 MTND2P22 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 22 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND2 pseudogene 22 2011-06-02 2015-11-20 2015-11-20 100873228 ENSG00000231954 OTTHUMG00000153770 NG_032434 PGOHUM00000298693 +HGNC:42124 MTND2P23 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 23 pseudogene pseudogene Approved 2q34 02q34 MT-ND2 pseudogene 23 2011-06-02 2015-11-20 2015-11-20 100873229 ENSG00000232631 OTTHUMG00000154766 NG_032435 PGOHUM00000298872 +HGNC:42125 MTND2P24 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 24 pseudogene pseudogene Approved Xp11.21 Xp11.21 MT-ND2 pseudogene 24 2011-06-02 2015-11-20 2015-11-20 100873230 ENSG00000231947 OTTHUMG00000021653 NG_032436 PGOHUM00000304646 +HGNC:42126 MTND2P25 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 25 pseudogene pseudogene Approved Xq11.1 Xq11.1 MT-ND2 pseudogene 25 2011-06-02 2015-11-20 2015-11-20 100873231 ENSG00000228182 OTTHUMG00000021693 NG_032437 PGOHUM00000305102 +HGNC:42127 MTND2P26 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 26 pseudogene pseudogene Approved 11q22.3 11q22.3 MT-ND2 pseudogene 26 2011-06-02 2015-11-20 2015-11-20 100873349 ENSG00000254565 OTTHUMG00000165947 NG_032438 PGOHUM00000290675 +HGNC:42128 MTND2P27 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 27 pseudogene pseudogene Approved 1q43 01q43 MT-ND2 pseudogene 27 2011-06-02 2015-11-20 2015-11-20 100873232 NG_008799 PGOHUM00000296113 +HGNC:42129 MTND2P28 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 28 pseudogene pseudogene Approved 1p36.33 01p36.33 MT-ND2 pseudogene 28 2011-06-02 2015-11-20 2015-11-20 100652939 ENSG00000225630 OTTHUMG00000002336 NG_032768 PGOHUM00000296176 +HGNC:42130 MTND2P29 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 29 pseudogene pseudogene Approved 1p33 01p33 MT-ND2 pseudogene 29 2011-06-02 2015-11-20 2015-11-20 100873233 ENSG00000233595 OTTHUMG00000008274 NG_032440 PGOHUM00000296321 +HGNC:42131 MTND2P30 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 30 pseudogene pseudogene Approved 1p31.1 01p31.1 MT-ND2 pseudogene 30 2011-06-02 2015-11-20 2015-11-20 100873234 ENSG00000227937 OTTHUMG00000010773 NG_032441 PGOHUM00000296377 +HGNC:42132 MTND2P31 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 31 pseudogene pseudogene Approved 4p15.33 04p15.33 MT-ND2 pseudogene 31 2011-06-02 2015-11-20 2015-11-20 100873235 ENSG00000251252 OTTHUMG00000160120 NG_032442 PGOHUM00000299770 +HGNC:42139 MTND2P32 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 32 pseudogene pseudogene Approved 8p12 08p12 MT-ND2 pseudogene 32 2011-06-02 2015-11-20 2015-11-20 100873237 ENSG00000254090 OTTHUMG00000163932 NG_032444 PGOHUM00000303500 +HGNC:42134 MTND2P33 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 33 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-ND2 pseudogene 33 2011-06-02 2015-11-20 2015-11-20 100873236 ENSG00000248907 OTTHUMG00000161812 NG_032443 PGOHUM00000300048 +HGNC:52065 MTND2P34 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 34 pseudogene pseudogene Approved 16p13.3 16p13.3 MT-ND2 pseudogene 34 2015-10-16 2015-11-20 2015-11-20 107161146 NG_046685 PGOHUM00000293404 +HGNC:52066 MTND2P35 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 35 pseudogene pseudogene Approved 8q23.2 08q23.2 MT-ND2 pseudogene 35 2015-10-16 2015-11-20 2015-11-20 107161147 NG_046689 PGOHUM00000303357 +HGNC:52067 MTND2P36 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 36 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-ND2 pseudogene 36 2015-10-16 2015-11-20 2015-11-20 107161148 NG_046690 PGOHUM00000304083 +HGNC:52068 MTND2P37 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 37 pseudogene pseudogene Approved 7q31.2 07q31.2 MT-ND2 pseudogene 37 2015-10-16 2015-11-20 2015-11-20 107161150 NG_046692 PGOHUM00000302902 +HGNC:52069 MTND2P38 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 38 pseudogene pseudogene Approved 8q11.1 08q11.1 MT-ND2 pseudogene 38 2015-10-28 2015-11-20 2015-11-20 107075276 ENSG00000253828 OTTHUMG00000164131 NG_046512 PGOHUM00000303183 +HGNC:52070 MTND2P39 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 39 pseudogene pseudogene Approved Xq27.3 Xq27.3 MT-ND2 pseudogene 39 2015-10-16 2015-11-20 2015-11-20 107075312 ENSG00000230130 OTTHUMG00000022578 NG_046513 +HGNC:52084 MTND2P40 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 40 pseudogene pseudogene Approved 19p13.2 19p13.2 MT-ND2 pseudogene 40 2015-10-28 2015-11-20 2016-07-21 107075280 ENSG00000236483 OTTHUMG00000156417 NG_046514 +HGNC:52317 MTND2P41 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 2 pseudogene 41 pseudogene pseudogene Approved 4q13.2 04q13.2 2016-07-22 2016-07-22 ENSG00000283131 OTTHUMG00000191786 PGOHUM00000299856 +HGNC:39856 MTND3P1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 "MTND3 pseudogene 1|MT-ND3 pseudogene 1" 2011-04-05 2015-11-20 2015-11-20 100873208 ENSG00000226118 OTTHUMG00000016548 NG_032362 +HGNC:42142 MTND3P2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 MT-ND3 pseudogene 2 2011-06-02 2015-11-20 2015-11-20 100873180 ENSG00000230052 OTTHUMG00000156478 NG_032447 PGOHUM00000302239 +HGNC:42155 MTND3P3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 3 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-ND3 pseudogene 3 2011-06-02 2015-11-20 2015-11-20 100873187 ENSG00000249127 OTTHUMG00000161926 NG_032455 PGOHUM00000300043 +HGNC:42144 MTND3P4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 4 pseudogene pseudogene Approved 9q31.1 09q31.1 MT-ND3 pseudogene 4 2011-06-02 2015-11-20 2015-11-20 100873181 ENSG00000230302 OTTHUMG00000020389 NG_032448 PGOHUM00000304015 +HGNC:42154 MTND3P5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 5 pseudogene pseudogene Approved 4p15.2 04p15.2 MT-ND3 pseudogene 5 2011-06-02 2015-11-20 2015-11-20 100873186 ENSG00000251353 OTTHUMG00000160335 NG_032454 PGOHUM00000299784 +HGNC:42146 MTND3P6 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 6 pseudogene pseudogene Approved 3q13.12 03q13.12 MT-ND3 pseudogene 6 2011-06-02 2015-11-20 2015-11-20 100873182 ENSG00000242214 OTTHUMG00000159164 NG_032449 PGOHUM00000299113 +HGNC:42147 MTND3P7 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 7 pseudogene pseudogene Approved 3q26.1 03q26.1 MT-ND3 pseudogene 7 2011-06-02 2015-11-20 2015-11-20 100873183 ENSG00000240824 OTTHUMG00000158212 NG_032450 PGOHUM00000299260 +HGNC:42153 MTND3P8 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 8 pseudogene pseudogene Approved 1q42.3 01q42.3 MT-ND3 pseudogene 8 2011-06-02 2015-11-20 2015-11-20 100873185 ENSG00000232714 OTTHUMG00000040742 NG_032453 PGOHUM00000296108 +HGNC:42149 MTND3P9 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 9 pseudogene pseudogene Approved 2q22.2 02q22.2 MT-ND3 pseudogene 9 2011-06-02 2015-11-20 2015-11-20 100873184 ENSG00000227557 OTTHUMG00000153937 NG_032451 PGOHUM00000298178 +HGNC:42150 MTND3P10 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 10 pseudogene pseudogene Approved 2q14.2 02q14.2 MT-ND3 pseudogene 10 2011-06-02 2015-11-20 2015-11-20 100873239 ENSG00000233286 OTTHUMG00000154459 NG_032452 PGOHUM00000298665 +HGNC:52071 MTND3P11 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 11 pseudogene pseudogene Approved 11q14.1 11q14.1 MT-ND3 pseudogene 11 2015-10-19 2015-11-20 2015-11-20 107161160 NG_046699 PGOHUM00000291052 +HGNC:52072 MTND3P12 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 12 pseudogene pseudogene Approved 15q21.3 15q21.3 MT-ND3 pseudogene 12 2015-10-19 2015-11-20 2015-11-20 107075160 ENSG00000259626 OTTHUMG00000171995 PGOHUM00000293250 +HGNC:52073 MTND3P13 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 13 pseudogene pseudogene Approved 16p13.13 16p13.13 MT-ND3 pseudogene 13 2015-10-19 2015-11-20 2015-11-20 107075277 ENSG00000263196 OTTHUMG00000177349 PGOHUM00000293418 +HGNC:52074 MTND3P14 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 14 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-ND3 pseudogene 14 2015-10-19 2015-11-20 2015-11-20 107161161 NG_046700 PGOHUM00000304088 +HGNC:52075 MTND3P15 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 15 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND3 pseudogene 15 2015-10-19 2015-11-20 2015-11-20 107161162 NG_046702 PGOHUM00000298698 +HGNC:52076 MTND3P16 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 16 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-ND3 pseudogene 16 2015-10-19 2015-11-20 2015-11-20 107075278 ENSG00000224590 OTTHUMG00000154755 NG_046515 +HGNC:52077 MTND3P17 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 17 pseudogene pseudogene Approved 2q33.2 02q33.2 MT-ND3 pseudogene 17 2015-10-19 2015-11-20 2015-11-20 107075279 ENSG00000233134 OTTHUMG00000154680 NG_046516 +HGNC:52078 MTND3P18 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 18 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND3 pseudogene 18 2015-10-19 2015-11-20 2015-11-20 107161164 NG_046703 PGOHUM00000298133 +HGNC:52081 MTND3P19 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 19 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-ND3 pseudogene 19 2015-10-27 2015-11-20 2015-11-20 107075161 ENSG00000271480 OTTHUMG00000185131 NG_046517 PGOHUM00000300693 +HGNC:52166 MTND3P20 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 20 pseudogene pseudogene Approved 6q25.2 06q25.2 MT-ND3 pseudogene 20 2015-10-26 2015-11-20 2015-11-20 107075294 ENSG00000220733 OTTHUMG00000015865 NG_046518 +HGNC:52167 MTND3P21 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 21 pseudogene pseudogene Approved 1p22.1 01p22.1 MT-ND3 pseudogene 21 2015-10-26 2015-11-20 2015-11-20 107075198 ENSG00000235794 OTTHUMG00000010568 NG_046519 +HGNC:52168 MTND3P22 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 22 pseudogene pseudogene Approved 4p11 04p11 MT-ND3 pseudogene 22 2015-10-26 2015-11-20 2015-11-20 107075314 ENSG00000248946 OTTHUMG00000163192 NG_046520 +HGNC:52169 MTND3P23 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 23 pseudogene pseudogene Approved 9q22.31 09q22.31 MT-ND3 pseudogene 23 2015-10-26 2015-11-20 2015-11-20 107075295 ENSG00000238288 OTTHUMG00000021038 NG_046521 +HGNC:52170 MTND3P24 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 24 pseudogene pseudogene Approved 4q13.1 04q13.1 MT-ND3 pseudogene 24 2015-10-26 2015-11-20 2015-11-20 107075199 ENSG00000249045 OTTHUMG00000162342 +HGNC:52172 MTND3P25 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 3 pseudogene 25 pseudogene pseudogene Approved 5q31.1 05q31.1 MT-ND3 pseudogene 25 2015-10-26 2015-11-20 2015-11-20 107075297 ENSG00000249192 OTTHUMG00000163071 NG_046522 +HGNC:31347 MTND4LP1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 1 pseudogene pseudogene Approved Xq25 Xq25 MTND4L2 MTND4 like 2 "MTND4L pseudogene 1|MT-ND4L pseudogene 1" 2010-08-18 2015-11-20 2015-11-20 106478909 ENSG00000231501 OTTHUMG00000022351 NG_043411 PGOHUM00000305304 +HGNC:42236 MTND4LP2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 MT-ND4L pseudogene 2 2015-10-12 2015-11-20 2015-11-20 107075098 ENSG00000248315 OTTHUMG00000156473 PGOHUM00000302238 +HGNC:42265 MTND4LP3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 3 pseudogene pseudogene Approved 3q13.12 03q13.12 MT-ND4L pseudogene 3 2015-10-12 2015-11-20 2015-11-20 107075245 ENSG00000239632 OTTHUMG00000159165 NG_046530 PGOHUM00000299112 +HGNC:42238 MTND4LP4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 4 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-ND4L pseudogene 4 2015-10-12 2015-11-20 2015-11-20 107131120 NG_046638 PGOHUM00000302675 +HGNC:42239 MTND4LP5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 5 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-ND4L pseudogene 5 2015-10-12 2015-11-20 2015-11-20 107075235 ENSG00000270350 OTTHUMG00000185130 PGOHUM00000300692 +HGNC:42240 MTND4LP6 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 6 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-ND4L pseudogene 6 2015-10-12 2015-11-20 2015-11-20 107131121 NG_046639 PGOHUM00000304089 +HGNC:42241 MTND4LP7 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 7 pseudogene pseudogene Approved 9q22.31 09q22.31 MT-ND4L pseudogene 7 2015-10-12 2015-11-20 2015-11-20 107075236 ENSG00000240791 OTTHUMG00000020217 PGOHUM00000304384 +HGNC:42242 MTND4LP8 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 8 pseudogene pseudogene Approved 17p11.2 17p11.2 MT-ND4L pseudogene 8 2015-10-12 2015-11-20 2015-11-20 107131124 NG_046642 PGOHUM00000294354 +HGNC:42243 MTND4LP9 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 9 pseudogene pseudogene Approved 3p24.1 03p24.1 MT-ND4L pseudogene 9 2015-10-12 2015-11-20 2015-11-20 107075237 ENSG00000227795 OTTHUMG00000155734 NG_046531 PGOHUM00000298979 +HGNC:42244 MTND4LP10 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 10 pseudogene pseudogene Approved 3q26.1 03q26.1 MT-ND4L pseudogene 10 2015-10-12 2015-11-20 2015-11-20 107075099 ENSG00000240084 OTTHUMG00000158214 NG_046523 PGOHUM00000299259 +HGNC:42245 MTND4LP11 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 11 pseudogene pseudogene Approved 10p11.22 10p11.22 MT-ND4L pseudogene 11 2015-10-12 2015-11-20 2015-11-20 107075238 ENSG00000234163 OTTHUMG00000017932 NG_046524 PGOHUM00000289788 +HGNC:42246 MTND4LP12 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 12 pseudogene pseudogene Approved 2q22.2 02q22.2 MT-ND4L pseudogene 12 2015-10-12 2015-11-20 2015-11-20 107075239 ENSG00000236300 OTTHUMG00000153839 PGOHUM00000298177 +HGNC:42247 MTND4LP13 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 13 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-ND4L pseudogene 13 2015-10-12 2015-11-20 2015-11-20 107075100 ENSG00000235318 OTTHUMG00000154738 PGOHUM00000298280 +HGNC:42248 MTND4LP14 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 14 pseudogene pseudogene Approved 2q14.2 02q14.2 MT-ND4L pseudogene 14 2015-10-12 2015-11-20 2015-11-20 107075305 ENSG00000243104 OTTHUMG00000154460 PGOHUM00000298666 +HGNC:42249 MTND4LP15 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 15 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND4L pseudogene 15 2015-10-12 2015-11-20 2015-11-20 107131123 NG_046641 PGOHUM00000298699 +HGNC:42250 MTND4LP16 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 16 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-ND4L pseudogene 16 2015-10-12 2015-11-20 2015-11-20 107075210 ENSG00000234731 OTTHUMG00000154758 PGOHUM00000298836 +HGNC:42251 MTND4LP17 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 17 pseudogene pseudogene Approved 2q33.2 02q33.2 MT-ND4L pseudogene 17 2015-10-12 2015-11-20 2015-11-20 107075240 ENSG00000241221 OTTHUMG00000154672 NG_046525 PGOHUM00000298848 +HGNC:42252 MTND4LP18 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 18 pseudogene pseudogene Approved 11q14.1 11q14.1 MT-ND4L pseudogene 18 2015-10-12 2015-11-20 2015-11-20 107075101 ENSG00000254747 OTTHUMG00000166827 PGOHUM00000291053 +HGNC:42253 MTND4LP19 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 19 pseudogene pseudogene Approved 6q15 06q15 MT-ND4L pseudogene 19 2015-10-12 2015-11-20 2015-11-20 107075241 ENSG00000219087 OTTHUMG00000015220 NG_046526 PGOHUM00000301888 +HGNC:42254 MTND4LP20 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 20 pseudogene pseudogene Approved 6q25.2 06q25.2 MT-ND4L pseudogene 20 2015-10-12 2015-11-20 2015-11-20 107075242 ENSG00000220514 OTTHUMG00000015866 NG_046527 PGOHUM00000301998 +HGNC:42255 MTND4LP21 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 21 pseudogene pseudogene Approved 1q42.3 01q42.3 MT-ND4L pseudogene 21 2015-10-12 2015-11-20 2015-11-20 107075306 ENSG00000231582 OTTHUMG00000040743 PGOHUM00000296107 +HGNC:42256 MTND4LP22 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 22 pseudogene pseudogene Approved 4p15.2 04p15.2 MT-ND4L pseudogene 22 2015-10-12 2015-11-20 2015-11-20 107075102 ENSG00000248133 OTTHUMG00000160334 NG_046528 PGOHUM00000299783 +HGNC:42257 MTND4LP23 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 23 pseudogene pseudogene Approved MT-ND4L pseudogene 23 2015-10-13 2015-11-20 2015-11-20 107133487 NG_046644 PGOHUM00000293251 +HGNC:42258 MTND4LP24 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 24 pseudogene pseudogene Approved 16p13.13 16p13.13 MT-ND4L pseudogene 24 2015-10-12 2015-11-20 2015-11-20 107075103 ENSG00000262259 OTTHUMG00000177348 PGOHUM00000293417 +HGNC:42259 MTND4LP25 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 25 pseudogene pseudogene Approved 16q12.1 16q12.1 MT-ND4L pseudogene 25 2015-10-12 2015-11-20 2015-11-20 107075243 ENSG00000260067 OTTHUMG00000176681 PGOHUM00000293606 +HGNC:42260 MTND4LP26 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 26 pseudogene pseudogene Approved 8p22 08p22 MT-ND4L pseudogene 26 2015-10-12 2015-11-20 2015-11-20 107075104 ENSG00000254015 OTTHUMG00000163793 NG_046529 PGOHUM00000303122 +HGNC:42261 MTND4LP27 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 27 pseudogene pseudogene Approved 8q13.2 08q13.2 MT-ND4L pseudogene 27 2015-10-14 2015-11-20 2015-11-20 107133488 NG_046645 PGOHUM00000303237 +HGNC:42262 MTND4LP28 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 28 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND4L pseudogene 28 2015-10-12 2015-11-20 2015-11-20 107133489 NG_046647 PGOHUM00000298132 +HGNC:42263 MTND4LP29 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 29 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-ND4L pseudogene 29 2015-10-12 2015-11-20 2015-11-20 107133490 NG_046648 PGOHUM00000300042 +HGNC:42264 MTND4LP30 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 30 pseudogene pseudogene Approved 5q31.1 05q31.1 MT-ND4L pseudogene 30 2015-10-12 2015-11-20 2015-11-20 107075244 ENSG00000198868 OTTHUMG00000163074 PGOHUM00000300765 +HGNC:52171 MTND4LP31 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 31 pseudogene pseudogene Approved 4q13.1 04q13.1 MT-ND4L pseudogene 31 2015-10-26 2015-11-20 2015-11-20 107075296 ENSG00000248259 OTTHUMG00000162343 +HGNC:52318 MTND4LP32 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4L pseudogene 32 pseudogene pseudogene Approved 7p11.2 07p11.2 2016-07-22 2016-07-22 ENSG00000283481 OTTHUMG00000191813 PGOHUM00000302665 +HGNC:42035 MTND4P1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 1 pseudogene pseudogene Approved 13q31.1 13q31.1 MT-ND4 pseudogene 1 2011-06-01 2015-11-20 2015-11-20 100873211 ENSG00000228597 OTTHUMG00000017153 NG_032393 PGOHUM00000292211 +HGNC:42189 MTND4P2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 MT-ND4 pseudogene 2 2011-06-08 2015-11-20 2015-11-20 100873188 ENSG00000248704 OTTHUMG00000156480 NG_032457 PGOHUM00000302237 +HGNC:42190 MTND4P3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 3 pseudogene pseudogene Approved 7q11.22 07q11.22 MT-ND4 pseudogene 3 2011-06-08 2015-11-20 2015-11-20 100873189 ENSG00000225959 OTTHUMG00000156580 NG_032458 PGOHUM00000302284 +HGNC:42191 MTND4P4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 4 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-ND4 pseudogene 4 2011-06-08 2015-11-20 2015-11-20 100873190 ENSG00000225295 OTTHUMG00000156690 PGOHUM00000302666 +HGNC:42192 MTND4P5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 5 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-ND4 pseudogene 5 2011-06-08 2015-11-20 2015-11-20 100873191 ENSG00000227584 OTTHUMG00000156680 NG_032460 PGOHUM00000302676 +HGNC:42193 MTND4P6 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 6 pseudogene pseudogene Approved 7q31.2 07q31.2 MT-ND4 pseudogene 6 2011-06-08 2015-11-20 2015-11-20 100873192 ENSG00000224042 OTTHUMG00000033990 NG_032461 PGOHUM00000302903 +HGNC:42234 MTND4P7 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 7 pseudogene pseudogene Approved 8p22 08p22 MT-ND4 pseudogene 7 2011-06-08 2015-11-20 2015-11-20 100873195 ENSG00000253257 OTTHUMG00000163951 NG_032484 PGOHUM00000303113 +HGNC:42227 MTND4P8 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 8 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-ND4 pseudogene 8 2011-06-08 2015-11-20 2015-11-20 100873194 ENSG00000248548 OTTHUMG00000161821 NG_032483 PGOHUM00000300041 +HGNC:42226 MTND4P9 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 9 pseudogene pseudogene Approved 4p15.2 04p15.2 MT-ND4 pseudogene 9 2011-06-08 2015-11-20 2015-11-20 100873193 ENSG00000250050 OTTHUMG00000160336 NG_032482 PGOHUM00000299782 +HGNC:42225 MTND4P10 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 10 pseudogene pseudogene Approved 1q42.3 01q42.3 MT-ND4 pseudogene 10 2011-06-08 2015-11-20 2015-11-20 100873256 ENSG00000226663 OTTHUMG00000040744 NG_032481 PGOHUM00000296106 +HGNC:42223 MTND4P11 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 11 pseudogene pseudogene Approved 1p22.1 01p22.1 MT-ND4 pseudogene 11 2011-06-08 2015-11-20 2015-11-20 100873255 ENSG00000234099 OTTHUMG00000010569 NG_032480 PGOHUM00000295756 +HGNC:42199 MTND4P12 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 12 pseudogene pseudogene Approved 5q31.1 05q31.1 MT-ND4 pseudogene 12 2011-06-08 2015-11-20 2015-11-20 100293090 ENSG00000247627 OTTHUMG00000163066 NG_029205 PGOHUM00000300764 +HGNC:42222 MTND4P13 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 13 pseudogene pseudogene Approved 6q25.2 06q25.2 MT-ND4 pseudogene 13 2011-06-08 2015-11-20 2015-11-20 100862853 ENSG00000216713 OTTHUMG00000015867 NG_032145 PGOHUM00000301999 +HGNC:42201 MTND4P14 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 14 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-ND4 pseudogene 14 2011-06-08 2015-11-20 2015-11-20 100653489 ENSG00000236254 OTTHUMG00000019486 NG_029701 PGOHUM00000304090 +HGNC:42202 MTND4P15 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 15 pseudogene pseudogene Approved 9q22.31 09q22.31 MT-ND4 pseudogene 15 2011-06-08 2015-11-20 2015-11-20 100873240 ENSG00000227321 OTTHUMG00000020218 NG_032462 PGOHUM00000304385 +HGNC:42203 MTND4P16 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 16 pseudogene pseudogene Approved 3q13.12 03q13.12 MT-ND4 pseudogene 16 2011-06-08 2015-11-20 2015-11-20 100873241 ENSG00000241787 OTTHUMG00000159166 NG_032463 PGOHUM00000299111 +HGNC:42204 MTND4P17 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 17 pseudogene pseudogene Approved 3q26.1 03q26.1 MT-ND4 pseudogene 17 2011-06-08 2015-11-20 2015-11-20 100873242 ENSG00000242178 OTTHUMG00000158171 NG_032464 PGOHUM00000299258 +HGNC:42205 MTND4P18 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 18 pseudogene pseudogene Approved 10p11.21 10p11.21 MT-ND4 pseudogene 18 2011-06-08 2015-11-20 2015-11-20 100873350 ENSG00000228694 OTTHUMG00000017962 NG_032465 PGOHUM00000289794 +HGNC:42206 MTND4P19 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 19 pseudogene pseudogene Approved 10q23.33 10q23.33 MT-ND4 pseudogene 19 2011-06-08 2015-11-20 2015-11-20 100873351 ENSG00000230338 OTTHUMG00000018795 NG_008384 PGOHUM00000289961 +HGNC:42207 MTND4P20 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 20 pseudogene pseudogene Approved 10q23.33 10q23.33 MT-ND4 pseudogene 20 2011-06-08 2015-11-20 2015-11-20 100873352 ENSG00000233377 OTTHUMG00000018801 NG_032467 PGOHUM00000289962 +HGNC:42208 MTND4P21 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 21 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND4 pseudogene 21 2011-06-08 2015-11-20 2015-11-20 100873243 ENSG00000231777 OTTHUMG00000153572 NG_032468 PGOHUM00000298131 +HGNC:42209 MTND4P22 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 22 pseudogene pseudogene Approved 2q22.2 02q22.2 MT-ND4 pseudogene 22 2011-06-08 2015-11-20 2015-11-20 100873244 ENSG00000232772 OTTHUMG00000153840 NG_032469 PGOHUM00000298176 +HGNC:42210 MTND4P23 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 23 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-ND4 pseudogene 23 2011-06-08 2015-11-20 2015-11-20 100873245 ENSG00000225796 OTTHUMG00000154739 NG_032470 PGOHUM00000298279 +HGNC:42220 MTND4P24 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 24 pseudogene pseudogene Approved Xq25 Xq25 MT-ND4 pseudogene 24 2011-06-08 2015-11-20 2015-11-20 100873254 ENSG00000232177 OTTHUMG00000022352 NG_032479 PGOHUM00000305305 +HGNC:42212 MTND4P25 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 25 pseudogene pseudogene Approved 2p12 02p12 MT-ND4 pseudogene 25 2011-06-08 2015-11-20 2015-11-20 100873246 ENSG00000226700 OTTHUMG00000152963 NG_032471 PGOHUM00000298484 +HGNC:42213 MTND4P26 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 26 pseudogene pseudogene Approved 2q14.2 02q14.2 MT-ND4 pseudogene 26 2011-06-08 2015-11-20 2015-11-20 100873247 ENSG00000234065 OTTHUMG00000154456 NG_032472 PGOHUM00000298667 +HGNC:42214 MTND4P27 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 27 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND4 pseudogene 27 2011-06-08 2015-11-20 2015-11-20 100873248 ENSG00000230548 OTTHUMG00000153772 NG_032473 PGOHUM00000298700 +HGNC:42215 MTND4P28 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 28 pseudogene pseudogene Approved 2q24.1 02q24.1 MT-ND4 pseudogene 28 2011-06-08 2015-11-20 2015-11-20 100873249 ENSG00000233709 OTTHUMG00000153816 NG_032474 PGOHUM00000298763 +HGNC:42216 MTND4P29 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 29 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-ND4 pseudogene 29 2011-06-08 2015-11-20 2015-11-20 100873250 ENSG00000249177 OTTHUMG00000154760 NG_032475 PGOHUM00000298837 +HGNC:42217 MTND4P30 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 30 pseudogene pseudogene Approved 2q33.2 02q33.2 MT-ND4 pseudogene 30 2011-06-08 2015-11-20 2015-11-20 100873251 ENSG00000227454 OTTHUMG00000154679 NG_032476 PGOHUM00000298849 +HGNC:42218 MTND4P31 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 31 pseudogene pseudogene Approved Xq13.1 Xq13.1 MT-ND4 pseudogene 31 2011-06-08 2015-11-20 2015-11-20 100873252 ENSG00000235382 OTTHUMG00000021760 NG_032477 PGOHUM00000304685 +HGNC:42219 MTND4P32 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 32 pseudogene pseudogene Approved Xq22.1 Xq22.1 MT-ND4 pseudogene 32 2011-06-08 2015-11-20 2015-11-20 100873253 ENSG00000226056 OTTHUMG00000022063 NG_032478 PGOHUM00000305227 +HGNC:51947 MTND4P33 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 33 pseudogene pseudogene Approved 14q31.2 14q31.2 MT-ND4 pseudogene 33 2015-10-12 2015-11-20 2015-11-20 107075253 ENSG00000258762 OTTHUMG00000171375 PGOHUM00000292741 +HGNC:51948 MTND4P34 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 34 pseudogene pseudogene Approved 16p13.13 16p13.13 MT-ND4 pseudogene 34 2015-10-12 2015-11-20 2015-11-20 107075308 ENSG00000262322 OTTHUMG00000177347 NG_046532 PGOHUM00000293416 +HGNC:51949 MTND4P35 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 35 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-ND4 pseudogene 35 2015-10-12 2015-11-20 2015-11-20 107075117 ENSG00000270906 OTTHUMG00000185129 PGOHUM00000300691 +HGNC:51950 MTND4P36 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 36 pseudogene pseudogene Approved 11q14.1 11q14.1 MT-ND4 pseudogene 36 2015-10-12 2015-11-20 2015-11-20 107403074 NG_046794 PGOHUM00000291054 +HGNC:52319 MTND4P37 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 37 pseudogene pseudogene Approved 15q15.1 15q15.1 2016-07-22 2016-07-22 PGOHUM00000292916 +HGNC:52320 MTND4P38 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 38 pseudogene pseudogene Approved 15q21.3 15q21.3 2016-07-22 2016-07-22 PGOHUM00000293252 +HGNC:52324 MTND4P39 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 39 pseudogene pseudogene Approved 8q13.2 08q13.2 2016-07-22 2016-07-22 PGOHUM00000303236 +HGNC:52336 MTND4P40 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 40 pseudogene pseudogene Approved 2q37.3 02q37.3 2016-07-22 2016-07-22 PGOHUM00000298366 +HGNC:52334 MTND4P41 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4 pseudogene 41 pseudogene pseudogene Approved 19q13.12 19q13.12 2016-07-22 2016-07-22 PGOHUM00000295351 +HGNC:39644 MTND5P1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 1 pseudogene pseudogene Approved 21q22.3 21q22.3 "MTND5 pseudogene 1|MT-ND5 pseudogene 1" 2011-03-17 2015-11-20 2015-11-20 100873206 ENSG00000227999 OTTHUMG00000040844 NG_032335 PGOHUM00000297274 +HGNC:41919 MTND5P2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 2 pseudogene pseudogene Approved 13q32.1 13q32.1 MT-ND5 pseudogene 2 2011-05-18 2015-11-20 2015-11-20 100873209 ENSG00000229622 OTTHUMG00000017222 NG_032375 PGOHUM00000292224 +HGNC:42034 MTND5P3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 3 pseudogene pseudogene Approved 13q31.1 13q31.1 MT-ND5 pseudogene 3 2011-06-01 2015-11-20 2015-11-20 100873210 ENSG00000232447 OTTHUMG00000017152 NG_032392 PGOHUM00000292212 +HGNC:42306 MTND5P4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 4 pseudogene pseudogene Approved 4p15.32 04p15.32 MT-ND5 pseudogene 4 2011-06-09 2015-11-20 2015-11-20 100873200 ENSG00000251212 OTTHUMG00000160230 NG_032507 PGOHUM00000300161 +HGNC:42307 MTND5P5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 5 pseudogene pseudogene Approved 4q24 04q24 MT-ND5 pseudogene 5 2011-06-09 2015-11-20 2015-11-20 100873201 ENSG00000251149 OTTHUMG00000160965 NG_032508 PGOHUM00000300304 +HGNC:42268 MTND5P6 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 6 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-ND5 pseudogene 6 2011-06-09 2015-11-20 2015-11-20 100873196 ENSG00000228440 OTTHUMG00000156679 NG_032485 PGOHUM00000302667 +HGNC:42269 MTND5P7 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 7 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-ND5 pseudogene 7 2011-06-09 2015-11-20 2015-11-20 100873197 ENSG00000230531 OTTHUMG00000156692 NG_032486 PGOHUM00000302677 +HGNC:42270 MTND5P8 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 8 pseudogene pseudogene Approved 7q31.1 07q31.1 MT-ND5 pseudogene 8 2011-06-09 2015-11-20 2015-11-20 100873198 ENSG00000230999 OTTHUMG00000155121 NG_032487 PGOHUM00000302897 +HGNC:42305 MTND5P9 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 9 pseudogene pseudogene Approved 4q32.1 04q32.1 MT-ND5 pseudogene 9 2011-06-10 2015-11-20 2015-11-20 100873199 ENSG00000248748 OTTHUMG00000161699 NG_032506 PGOHUM00000300040 +HGNC:42272 MTND5P10 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 10 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-ND5 pseudogene 10 2011-06-10 2015-11-20 2015-11-20 643031 ENSG00000271687 OTTHUMG00000185128 NG_027711 PGOHUM00000300690 +HGNC:42273 MTND5P11 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 11 pseudogene pseudogene Approved 5q31.1 05q31.1 MT-ND5 pseudogene 11 2011-06-10 2015-11-20 2015-11-20 100506169 ENSG00000248923 OTTHUMG00000163063 NG_029206 PGOHUM00000300763 +HGNC:42274 MTND5P12 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 12 pseudogene pseudogene Approved 5q15 05q15 MT-ND5 pseudogene 12 2011-06-10 2015-11-20 2015-11-20 100873257 ENSG00000251544 OTTHUMG00000162663 NG_032488 PGOHUM00000301055 +HGNC:42304 MTND5P13 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 13 pseudogene pseudogene Approved 4q13.1 04q13.1 MT-ND5 pseudogene 13 2011-06-10 2015-11-20 2015-11-20 100873272 ENSG00000250169 OTTHUMG00000162346 NG_032505 PGOHUM00000299845 +HGNC:42276 MTND5P14 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 14 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-ND5 pseudogene 14 2011-06-10 2015-11-20 2015-11-20 100873258 ENSG00000230225 OTTHUMG00000019481 NG_032489 PGOHUM00000304091 +HGNC:42277 MTND5P15 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 15 pseudogene pseudogene Approved 3q26.32 03q26.32 MT-ND5 pseudogene 15 2011-06-10 2015-11-20 2015-11-20 100873259 ENSG00000231888 OTTHUMG00000157221 NG_032490 PGOHUM00000299280 +HGNC:42278 MTND5P16 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 16 pseudogene pseudogene Approved 3q13.12 03q13.12 MT-ND5 pseudogene 16 2011-06-10 2015-11-20 2015-11-20 100862854 ENSG00000243658 OTTHUMG00000159140 NG_032146 PGOHUM00000299527 +HGNC:42279 MTND5P17 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 17 pseudogene pseudogene Approved 10p11.21 10p11.21 MT-ND5 pseudogene 17 2011-06-10 2015-11-20 2015-11-20 100873353 ENSG00000236626 OTTHUMG00000017961 NG_032491 PGOHUM00000289793 +HGNC:42302 MTND5P18 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 18 pseudogene pseudogene Approved 1q43 01q43 MT-ND5 pseudogene 18 2011-06-10 2015-11-20 2015-11-20 100873271 ENSG00000227860 OTTHUMG00000039589 NG_008799 PGOHUM00000296116 +HGNC:42301 MTND5P19 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 19 pseudogene pseudogene Approved 1q42.3 01q42.3 MT-ND5 pseudogene 19 2011-06-10 2015-11-20 2015-11-20 100873270 ENSG00000231199 OTTHUMG00000040745 NG_032503 PGOHUM00000296105 +HGNC:42300 MTND5P20 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 20 pseudogene pseudogene Approved 1p13.2 01p13.2 MT-ND5 pseudogene 20 2011-06-10 2015-11-20 2015-11-20 100873269 ENSG00000238256 OTTHUMG00000011801 NG_032502 PGOHUM00000295794 +HGNC:42296 MTND5P21 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 21 pseudogene pseudogene Approved 11p15.4 11p15.4 MT-ND5 pseudogene 21 2011-06-10 2015-11-20 2015-11-20 100873354 ENSG00000255123 OTTHUMG00000165725 NG_032501 PGOHUM00000290824 +HGNC:42284 MTND5P22 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 22 pseudogene pseudogene Approved 2q14.3 02q14.3 MT-ND5 pseudogene 22 2011-06-10 2015-11-20 2015-11-20 100873260 ENSG00000238046 OTTHUMG00000153364 NG_032492 PGOHUM00000298092 +HGNC:42285 MTND5P23 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 23 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND5 pseudogene 23 2011-06-10 2015-11-20 2015-11-20 100873261 ENSG00000235080 OTTHUMG00000153599 NG_032493 PGOHUM00000298130 +HGNC:42286 MTND5P24 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 24 pseudogene pseudogene Approved 2q22.2 02q22.2 MT-ND5 pseudogene 24 2011-06-10 2015-11-20 2015-11-20 100873262 ENSG00000224852 OTTHUMG00000153819 NG_032494 PGOHUM00000298175 +HGNC:42287 MTND5P25 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 25 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-ND5 pseudogene 25 2011-06-10 2015-11-20 2015-11-20 100873263 ENSG00000227348 OTTHUMG00000154740 NG_032495 PGOHUM00000298278 +HGNC:42295 MTND5P26 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 26 pseudogene pseudogene Approved Xq22.1 Xq22.1 MT-ND5 pseudogene 26 2011-06-10 2015-11-20 2015-11-20 100873268 ENSG00000234886 OTTHUMG00000022064 NG_032500 PGOHUM00000305228 +HGNC:42289 MTND5P27 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 27 pseudogene pseudogene Approved 2p12 02p12 MT-ND5 pseudogene 27 2011-06-10 2015-11-20 2015-11-20 100873264 ENSG00000225045 OTTHUMG00000152965 NG_032496 PGOHUM00000298485 +HGNC:42290 MTND5P28 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 28 pseudogene pseudogene Approved 2q14.2 02q14.2 MT-ND5 pseudogene 28 2011-06-10 2015-11-20 2015-11-20 100505755 ENSG00000223549 OTTHUMG00000154458 NG_029210 PGOHUM00000298668 +HGNC:42291 MTND5P29 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 29 pseudogene pseudogene Approved 2q21.1 02q21.1 MT-ND5 pseudogene 29 2011-06-10 2015-11-20 2015-11-20 100873265 ENSG00000234934 OTTHUMG00000153769 NG_032497 PGOHUM00000298701 +HGNC:42292 MTND5P30 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 30 pseudogene pseudogene Approved 2q24.1 02q24.1 MT-ND5 pseudogene 30 2011-06-10 2015-11-20 2015-11-20 100873266 ENSG00000233039 OTTHUMG00000153814 NG_032498 PGOHUM00000298764 +HGNC:42293 MTND5P31 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 31 pseudogene pseudogene Approved 2q33.1 02q33.1 MT-ND5 pseudogene 31 2011-06-10 2015-11-20 2015-11-20 100873267 ENSG00000227841 OTTHUMG00000154757 NG_032499 PGOHUM00000298838 +HGNC:51951 MTND5P32 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 32 pseudogene pseudogene Approved 15q21.3 15q21.3 MT-ND5 pseudogene 32 2015-10-13 2015-11-20 2015-11-20 107075254 ENSG00000259379 OTTHUMG00000171998 PGOHUM00000293253 +HGNC:51952 MTND5P33 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 33 pseudogene pseudogene Approved 16p13.13 16p13.13 MT-ND5 pseudogene 33 2015-10-13 2015-11-20 2015-11-20 107075118 ENSG00000261904 OTTHUMG00000177346 NG_046533 PGOHUM00000293415 +HGNC:51953 MTND5P34 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 34 pseudogene pseudogene Approved 16q12.2 16q12.2 MT-ND5 pseudogene 34 2015-10-13 2015-11-20 2015-11-20 107075255 ENSG00000260147 OTTHUMG00000173134 NG_046534 PGOHUM00000293867 +HGNC:51954 MTND5P35 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 35 pseudogene pseudogene Approved 14q31.2 14q31.2 MT-ND5 pseudogene 35 2015-10-13 2015-11-20 2015-11-20 107075119 ENSG00000258923 OTTHUMG00000171376 PGOHUM00000292742 +HGNC:51955 MTND5P36 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 36 pseudogene pseudogene Approved 9p24.1 09p24.1 MT-ND5 pseudogene 36 2015-10-14 2015-11-20 2015-11-20 107133491 NG_046649 PGOHUM00000303718 +HGNC:51956 MTND5P37 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 37 pseudogene pseudogene Approved 15q15.1 15q15.1 MT-ND5 pseudogene 37 2015-10-14 2015-11-20 2016-07-21 107133493 NG_046651 PGOHUM00000292915 +HGNC:51957 MTND5P38 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 38 pseudogene pseudogene Approved 11q14.1 11q14.1 MT-ND5 pseudogene 38 2015-10-14 2015-11-20 2015-11-20 107133495 NG_046653 PGOHUM00000291055 +HGNC:51958 MTND5P39 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 39 pseudogene pseudogene Approved Xq13.1 Xq13.1 MT-ND5 pseudogene 39 2015-10-15 2015-11-20 2015-11-20 107133496 NG_046654 PGOHUM00000304684 +HGNC:51959 MTND5P40 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 40 pseudogene pseudogene Approved 15q21.1 15q21.1 MT-ND5 pseudogene 40 2015-10-28 2015-11-20 2015-11-20 107075256 ENSG00000259593 OTTHUMG00000172031 PGOHUM00000293232 +HGNC:51972 MTND5P41 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 41 pseudogene pseudogene Approved 8p12 08p12 MT-ND5 pseudogene 41 2015-10-13 2015-11-20 2016-07-22 107075309 ENSG00000253685 OTTHUMG00000163976 NG_046535 +HGNC:52321 MTND5P42 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 42 pseudogene pseudogene Approved 10q23.31 10q23.31 2016-07-22 2016-07-22 ENSG00000283578 OTTHUMG00000191790 PGOHUM00000290245 +HGNC:52322 MTND5P43 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 43 pseudogene pseudogene Approved 12p11.21 12p11.21 2016-07-22 2016-07-22 PGOHUM00000291602 +HGNC:52323 MTND5P44 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 44 pseudogene pseudogene Approved 8q13.2 08q13.2 2016-07-22 2016-07-22 PGOHUM00000303235 +HGNC:52333 MTND5P45 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 45 pseudogene pseudogene Approved 19q13.12 19q13.12 2016-07-22 2016-07-22 PGOHUM00000295352 +HGNC:52335 MTND5P46 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 5 pseudogene 46 pseudogene pseudogene Approved 2q37.3 02q37.3 2016-07-22 2016-07-22 PGOHUM00000298365 +HGNC:38730 MTND6P1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 "MTND6P1|MTND6 pseudogene 1|MT-ND6 pseudogene 1" 2010-07-28 2015-11-20 2015-11-20 100499469 ENSG00000223955 OTTHUMG00000041270 NG_023537 PGOHUM00000305439 +HGNC:39465 MTND6P2 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 2 pseudogene pseudogene Approved 5p15.31 05p15.31 "MTND6 pseudogene 2|MT-ND6 pseudogene 2" 2011-01-18 2015-11-20 2015-11-20 106478941 ENSG00000250389 OTTHUMG00000161719 NG_043662 PGOHUM00000300489 +HGNC:39466 MTND6P3 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 3 pseudogene pseudogene Approved 5q15 05q15 "MTND6 pseudogene 3|MT-ND6 pseudogene 3" 2011-01-18 2015-11-20 2015-11-20 106478942 ENSG00000254132 OTTHUMG00000164091 NG_045534 PGOHUM00000300671 +HGNC:39467 MTND6P4 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 4 pseudogene pseudogene Approved 5q31.1 05q31.1 "MTND6 pseudogene 4|MT-ND6 pseudogene 4" 2011-01-18 2015-11-20 2015-11-20 106478943 ENSG00000249119 OTTHUMG00000163065 NG_045538 PGOHUM00000301125 +HGNC:39468 MTND6P5 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 5 pseudogene pseudogene Approved 9p24.1 09p24.1 "MTND6 pseudogene 5|MT-ND6 pseudogene 5" 2011-01-18 2015-11-20 2015-11-20 106480427 ENSG00000227730 OTTHUMG00000019484 NG_045380 PGOHUM00000304081 +HGNC:39469 MTND6P6 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 6 pseudogene pseudogene Approved 3q13.12 03q13.12 "MTND6 pseudogene 6|MT-ND6 pseudogene 6" 2011-01-18 2015-11-20 2015-11-20 106478944 ENSG00000240034 OTTHUMG00000159144 NG_043683 PGOHUM00000299116 +HGNC:39470 MTND6P7 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 7 pseudogene pseudogene Approved 2p12 02p12 "MTND6 pseudogene 7|MT-ND6 pseudogene 7" 2011-01-18 2015-11-20 2015-11-20 106478945 ENSG00000224695 OTTHUMG00000152964 NG_043693 PGOHUM00000297934 +HGNC:39471 MTND6P8 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 8 pseudogene pseudogene Approved 2q21.1 02q21.1 "MTND6 pseudogene 8|MT-ND6 pseudogene 8" 2011-01-18 2015-11-20 2015-11-20 106480726 ENSG00000248136 OTTHUMG00000153773 NG_043615 PGOHUM00000298110 +HGNC:39472 MTND6P9 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 9 pseudogene pseudogene Approved 2q24.1 02q24.1 "MTND6 pseudogene 9|MT-ND6 pseudogene 9" 2011-01-18 2015-11-20 2015-11-20 106478946 ENSG00000233248 OTTHUMG00000153813 NG_043698 PGOHUM00000298197 +HGNC:39473 MTND6P10 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 10 pseudogene pseudogene Approved 2q21.1 02q21.1 "MTND6 pseudogene 10|MT-ND6 pseudogene 10" 2011-01-18 2015-11-20 2015-11-20 106478947 ENSG00000227275 OTTHUMG00000153555 NG_045087 PGOHUM00000298722 +HGNC:39474 MTND6P11 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 11 pseudogene pseudogene Approved 2q22.2 02q22.2 "MTND6 pseudogene 11|MT-ND6 pseudogene 11" 2011-01-18 2015-11-20 2015-11-20 106480727 ENSG00000226839 OTTHUMG00000153842 NG_045077 PGOHUM00000298747 +HGNC:39475 MTND6P12 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 12 pseudogene pseudogene Approved Xp22.32 Xp22.32 "MTND6 pseudogene 12|MT-ND6 pseudogene 12" 2011-01-18 2015-11-20 2015-11-20 106481743 ENSG00000235039 OTTHUMG00000021089 NG_043561 PGOHUM00000304499 +HGNC:39476 MTND6P13 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 13 pseudogene pseudogene Approved Xq22.1 Xq22.1 "MTND6 pseudogene 13|MT-ND6 pseudogene 13" 2011-01-18 2015-11-20 2015-11-20 106480428 ENSG00000234901 OTTHUMG00000022047 NG_043280 PGOHUM00000304784 +HGNC:39477 MTND6P14 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 14 pseudogene pseudogene Approved 1q42.3 01q42.3 "MTND6 pseudogene 14|MT-ND6 pseudogene 14" 2011-01-18 2015-11-20 2015-11-20 106478948 ENSG00000235638 OTTHUMG00000040746 NG_043712 PGOHUM00000296820 +HGNC:39478 MTND6P15 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 15 pseudogene pseudogene Approved 1q43 01q43 "MTND6 pseudogene 15|MT-ND6 pseudogene 15" 2011-01-18 2015-11-20 2015-11-20 106478949 ENSG00000225723 OTTHUMG00000039590 NG_043720 PGOHUM00000296828 +HGNC:39479 MTND6P16 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 16 pseudogene pseudogene Approved 4q13.1 04q13.1 "MTND6 pseudogene 16|MT-ND6 pseudogene 16" 2011-01-18 2015-11-20 2015-11-20 106478950 ENSG00000249893 OTTHUMG00000162340 NG_043729 PGOHUM00000300228 +HGNC:39480 MTND6P17 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 17 pseudogene pseudogene Approved 4q32.1 04q32.1 "MTND6 pseudogene 17|MT-ND6 pseudogene 17" 2011-01-18 2015-11-20 2015-11-20 106480728 ENSG00000249770 OTTHUMG00000161806 NG_043629 PGOHUM00000300410 +HGNC:39481 MTND6P18 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 18 pseudogene pseudogene Approved 13q32.1 13q32.1 "MTND6 pseudogene 18|MT-ND6 pseudogene 18" 2011-01-18 2015-11-20 2015-11-20 106478951 ENSG00000227714 OTTHUMG00000017223 NG_043737 PGOHUM00000292030 +HGNC:39482 MTND6P19 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 19 pseudogene pseudogene Approved 8p12 08p12 "MTND6 pseudogene 19|MT-ND6 pseudogene 19" 2011-01-18 2015-11-20 2015-11-20 106481788 ENSG00000254384 OTTHUMG00000163975 NG_043902 PGOHUM00000303505 +HGNC:39483 MTND6P20 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 20 pseudogene pseudogene Approved 8q11.1 08q11.1 "MTND6 pseudogene 20|MT-ND6 pseudogene 20" 2011-01-18 2015-11-20 2015-11-20 106478952 ENSG00000254156 OTTHUMG00000164134 NG_043743 PGOHUM00000303533 +HGNC:39639 MTND6P21 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 21 pseudogene pseudogene Approved 21q22.3 21q22.3 "MTND6 pseudogene 21|MT-ND6 pseudogene 21" 2011-03-17 2015-11-20 2015-11-20 100873332 ENSG00000223431 OTTHUMG00000040843 NG_032332 +HGNC:51978 MTND6P22 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 22 pseudogene pseudogene Approved 5q21.1 05q21.1 MT-ND6 pseudogene 22 2015-10-13 2015-11-20 2015-11-20 107075261 ENSG00000270230 OTTHUMG00000185127 NG_046536 PGOHUM00000301077 +HGNC:51981 MTND6P23 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 23 pseudogene pseudogene Approved 15q21.3 15q21.3 MT-ND6 pseudogene 23 2015-10-13 2015-11-20 2015-11-20 107133498 NG_046656 PGOHUM00000292961 +HGNC:51982 MTND6P24 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 24 pseudogene pseudogene Approved 7q31.1 07q31.1 MT-ND6 pseudogene 24 2015-10-13 2015-11-20 2015-11-20 107063611 ENSG00000232922 OTTHUMG00000155123 NG_046364 PGOHUM00000302395 +HGNC:51984 MTND6P25 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 25 pseudogene pseudogene Approved 11q14.1 11q14.1 MT-ND6 pseudogene 25 2015-10-19 2015-11-20 2015-11-20 107075262 ENSG00000255316 OTTHUMG00000166828 PGOHUM00000290605 +HGNC:51985 MTND6P26 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 26 pseudogene pseudogene Approved 12p11.21 12p11.21 MT-ND6 pseudogene 26 2015-10-28 2015-11-20 2015-11-20 107133500 NG_046658 PGOHUM00000291279 +HGNC:51986 MTND6P27 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 27 pseudogene pseudogene Approved 14q31.2 14q31.2 MT-ND6 pseudogene 27 2015-10-28 2015-11-20 2015-11-20 107133501 NG_046659 PGOHUM00000292430 +HGNC:51987 MTND6P28 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 28 pseudogene pseudogene Approved 16q23.3 16q23.3 MT-ND6 pseudogene 28 2015-10-13 2015-11-20 2015-11-20 107133503 NG_046660 PGOHUM00000293911 +HGNC:51988 MTND6P29 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 29 pseudogene pseudogene Approved 7p11.2 07p11.2 MT-ND6 pseudogene 29 2015-10-13 2015-11-20 2015-11-20 107133504 NG_046661 PGOHUM00000302200 +HGNC:51989 MTND6P30 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 30 pseudogene pseudogene Approved 8q13.2 08q13.2 MT-ND6 pseudogene 30 2015-10-13 2015-11-20 2015-11-20 107133505 NG_046662 PGOHUM00000303580 +HGNC:51990 MTND6P31 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 31 pseudogene pseudogene Approved Xq13.1 Xq13.1 MT-ND6 pseudogene 31 2015-10-13 2015-11-20 2015-11-20 107133507 NG_046663 PGOHUM00000305129 +HGNC:52173 MTND6P32 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 32 pseudogene pseudogene Approved Xq22.1 Xq22.1 MT-ND6 pseudogene 32 2015-10-27 2015-11-20 2015-11-20 107075200 ENSG00000227649 OTTHUMG00000022065 NG_046537 +HGNC:52175 MTND6P33 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 33 pseudogene pseudogene Approved 16p13.13 16p13.13 MT-ND6 pseudogene 33 2015-10-27 2015-11-20 2015-11-20 107075298 ENSG00000262107 OTTHUMG00000177345 NG_046538 +HGNC:52325 MTND6P34 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 34 pseudogene pseudogene Approved 17p11.2 17p11.2 2016-07-22 2016-07-22 PGOHUM00000294355 +HGNC:52326 MTND6P35 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 35 pseudogene pseudogene Approved 17p11.2 17p11.2 2016-07-22 2016-07-22 PGOHUM00000294014 +HGNC:52327 MTND6P36 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 36 pseudogene pseudogene Approved 7p11.2 07p11.2 2016-07-22 2016-07-22 PGOHUM00000302197 +HGNC:52328 MTND6P37 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 6 pseudogene 37 pseudogene pseudogene Approved 13q31.1 13q31.1 2016-07-22 2016-07-22 PGOHUM00000292012 +HGNC:7463 MTNR1A melatonin receptor 1A protein-coding gene gene with protein product Approved 4q35 04q35 MEL-1A-R Melatonin receptors 209 1995-03-22 2015-08-25 4543 ENSG00000168412 OTTHUMG00000185575 uc003izd.2 XM_011532002 CCDS3848 P48039 7558006 MGI:102967 RGD:620797 MTNR1A 600665 objectId:287 +HGNC:7464 MTNR1B melatonin receptor 1B protein-coding gene gene with protein product Approved 11q14.3 11q14.3 Melatonin receptors 209 1995-06-13 2016-10-05 4544 ENSG00000134640 OTTHUMG00000167364 uc001pdk.2 AB033598 XM_017017777 CCDS8290 P49286 MGI:2181726 RGD:620798 MTNR1B 600804 objectId:288 +HGNC:19261 MTO1 mitochondrial tRNA translation optimization 1 protein-coding gene gene with protein product Approved 6q13 06q13 mitochondrial translation optimization 1 homolog (S. cerevisiae) 2003-05-21 2013-05-07 2016-10-05 25821 ENSG00000135297 OTTHUMG00000015032 uc003pgz.5 AF132937 NM_012123 "CCDS4979|CCDS34485|CCDS47452" Q9Y2Z2 "12011058|22608499" MGI:1915541 RGD:1308830 MTO1 614667 317756 +HGNC:7465 MTOHR mitochondrially encoded heavy strand origin of replication other region Approved mitochondria mitochondria heavy strand origin of replication 1989-10-11 2005-02-15 2008-08-27 +HGNC:7466 MTOLR mitochondrially encoded light strand origin of replication other region Approved mitochondria mitochondria light strand origin of replication 1989-10-12 2005-02-15 2008-08-27 +HGNC:3942 MTOR mechanistic target of rapamycin protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "RAFT1|RAPT1|FLJ44809" "FK506 binding protein 12-rapamycin associated protein 2|rapamycin target protein|FKBP12-rapamycin complex-associated protein 1|FKBP-rapamycin associated protein|rapamycin associated protein FRAP2|dJ576K7.1 (FK506 binding protein 12-rapamycin associated protein 1)|rapamycin and FKBP12 target 1|mammalian target of rapamycin" "FRAP|FRAP2|FRAP1" "FK506 binding protein 12-rapamycin associated protein 1|mechanistic target of rapamycin (serine/threonine kinase)" "MTOR complex 1|MTOR complex 2" "1332|1333" 1995-07-18 2009-05-29 2016-03-09 2016-10-12 2475 ENSG00000198793 OTTHUMG00000002001 uc001asd.4 L34075 NM_004958 CCDS127 P42345 "8008069|8660990" MGI:1928394 RGD:68371 LRG_734|http://www.lrg-sequence.org/LRG/LRG_734 MTOR 601231 431220 objectId:2109 +HGNC:40242 MTOR-AS1 MTOR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.22 01p36.22 MTOR antisense RNA 1 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100873935 ENSG00000225602 OTTHUMG00000002003 uc031plf.2 NR_046600 +HGNC:25532 MTPAP mitochondrial poly(A) polymerase protein-coding gene gene with protein product Approved 10p11.23 10p11.23 "FLJ10486|mtPAP|SPAX4" TUTase1 PAPD1 PAP associated domain containing 1 Non-canonical poly(A) polymerases 1318 2004-04-07 2009-01-12 2009-01-12 2016-10-05 55149 ENSG00000107951 OTTHUMG00000017895 uc001iva.5 AL122121 NM_018109 CCDS7165 Q9NVV4 "12239557|15769737|15547249" MGI:1914690 RGD:1310900 MTPAP 613669 311271 +HGNC:15667 MTPN myotrophin protein-coding gene gene with protein product Approved 7q33 07q33 "MYOTROPHIN|GCDP|V-1" granule cell differentiation protein Ankyrin repeat domain containing 403 2001-08-16 2016-10-05 136319 ENSG00000105887 OTTHUMG00000155627 uc003vte.5 AC015987 NM_145808 CCDS5842 P58546 11474205 MGI:99445 RGD:619806 MTPN 606484 +HGNC:7468 MTR 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding gene gene with protein product Approved 1q43 01q43 cblG 1986-01-01 2015-08-25 4548 ENSG00000116984 OTTHUMG00000040060 uc001hyi.5 U73338 NM_000254 "CCDS1614|CCDS73054" Q99707 8968735 MGI:894292 RGD:621283 MTR database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=MTR MTR 156570 123572 2.1.1.13 +HGNC:7469 MTRF1 mitochondrial translation release factor 1 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "RF1|MTTRF1|MGC47721" mitochontrial peptide chain release factor 1 mitochondrial translational release factor 1 1999-06-03 2016-09-27 2016-10-05 9617 ENSG00000120662 OTTHUMG00000016790 uc001uxy.4 AF072934 NM_004294 CCDS9378 O75570 "9838146|10773675" MGI:2384815 RGD:1584329 MTRF1 604601 +HGNC:21051 MTRF1L mitochondrial translational release factor 1 like protein-coding gene gene with protein product Approved 6q25.2 06q25.2 "HMRF1L|mtRF1a" mitochondrial translational release factor 1-like 2003-05-12 2016-04-25 2015-11-23 2016-10-05 54516 ENSG00000112031 OTTHUMG00000015857 uc003qpi.5 BC011873 NM_019041 "CCDS5243|CCDS47502|CCDS75540" Q9UGC7 MGI:1918830 RGD:1598312 MTRF1L 613542 +HGNC:50611 MTRF1LP1 mitochondrial translational release factor 1 like pseudogene 1 pseudogene pseudogene Approved 11q23.2 11q23.2 mitochondrial translational release factor 1-like pseudogene 1 2014-05-27 2015-11-23 2015-11-23 100132520 ENSG00000256091 OTTHUMG00000168189 NG_021834 PGOHUM00000242895 +HGNC:50612 MTRF1LP2 mitochondrial translational release factor 1 like pseudogene 2 pseudogene pseudogene Approved 8q24.21 08q24.21 mitochondrial translational release factor 1-like pseudogene 2 2014-05-27 2015-11-23 2015-11-23 100130376 ENSG00000224110 OTTHUMG00000160430 NG_022437 PGOHUM00000249799 +HGNC:37155 MTRNR2L1 MT-RNR2-like 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 humanin-like 1 2010-06-29 2014-02-18 100462977 ENSG00000256618 OTTHUMG00000179068 uc002gzb.3 CR612552 NM_001190452 CCDS54097 P0CJ68 19477263 616985 +HGNC:37156 MTRNR2L2 MT-RNR2-like 2 other unknown Approved 5q14.1 05q14.1 humanin-like 2 2010-06-29 2014-11-19 100462981 ENSG00000271043 OTTHUMG00000184945 NM_001190470 P0CJ69 19477263 MTRNR2L2 +HGNC:37157 MTRNR2L3 MT-RNR2-like 3 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 humanin-like 3 2010-06-29 2014-02-18 100462983 ENSG00000256222 OTTHUMG00000184962 uc021wfd.2 NM_001190472 CCDS54476 P0CJ70 19477263 +HGNC:37161 MTRNR2L4 MT-RNR2-like 4 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 humanin-like 4 2010-06-29 2014-11-19 100463285 ENSG00000232196 OTTHUMG00000184964 uc021tce.2 NM_001190476 CCDS53985 P0CJ71 19477263 +HGNC:37162 MTRNR2L5 MT-RNR2-like 5 protein-coding gene gene with protein product Approved 10q21.1 10q21.1 humanin-like 5 2010-06-29 2014-02-18 100463289 ENSG00000249860 OTTHUMG00000184965 uc021pra.2 NM_001190478 CCDS53537 P0CJ72 19477263 MTRNR2L5 +HGNC:37163 MTRNR2L6 MT-RNR2-like 6 protein-coding gene gene with protein product Approved 7q34 07q34 humanin-like 6 2010-06-29 2014-02-18 100463482 ENSG00000270672 OTTHUMG00000184977 uc003vzz.3 NM_001190487 CCDS64784 P0CJ73 19477263 +HGNC:37164 MTRNR2L7 MT-RNR2-like 7 protein-coding gene gene with protein product Approved 10p11.21 10p11.21 humanin-like 7 2010-06-29 2014-02-18 100288485 ENSG00000256892 OTTHUMG00000184979 uc021ppd.2 NM_001190489 CCDS53524 P0CJ74 19477263 MTRNR2L7 +HGNC:37165 MTRNR2L8 MT-RNR2-like 8 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 humanin-like 8 2010-06-29 2014-02-18 100463486 ENSG00000255823 OTTHUMG00000184980 uc001miq.5 NM_001190702 CCDS53602 P0CJ75 19477263 +HGNC:37166 MTRNR2L9 MT-RNR2-like 9 other unknown Approved 6q11.1 06q11.1 MT-RNR2-like 9 (pseudogene) 2010-06-29 2015-03-18 2015-03-18 100463487 ENSG00000255633 OTTHUMG00000177605 NG_029631 P0CJ76 19477263 +HGNC:37167 MTRNR2L10 MT-RNR2-like 10 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 humanin-like 10 2010-06-29 2014-02-18 100463488 ENSG00000256045 OTTHUMG00000184991 uc022bxr.2 NM_001190708 CCDS55427 P0CJ77 19477263 +HGNC:37168 MTRNR2L11 MT-RNR2-like 11 other unknown Approved 1q43 01q43 MT-RNR2-like 11 (pseudogene) 2010-06-29 2016-07-19 2016-07-19 100463489 ENSG00000270188 OTTHUMG00000184992 uc057qqv.1 NG_023152 S4R3Y5 19477263 +HGNC:37169 MTRNR2L12 MT-RNR2-like 12 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 humanin-like 12 MT-RNR2-like 12 (pseudogene) 2010-06-29 2014-02-18 2014-02-18 100463498 ENSG00000269028 OTTHUMG00000175726 uc062lty.1 NG_023159 P0DMP1 19477263 +HGNC:37170 MTRNR2L13 MT-RNR2-like 13 protein-coding gene gene with protein product Approved 4q26 04q26 humanin-like 13 MT-RNR2-like 13 (pseudogene) 2010-06-29 2014-02-18 2014-02-18 100463500 ENSG00000270394 OTTHUMG00000184994 uc021xqy.2 NG_023160 S4R3P1 19477263 +HGNC:7472 MTRNR3 mitochondrially encoded 5S-like sequence other region Approved mitochondria mitochondria 5S-like sequence 1989-10-12 2005-02-15 2007-06-18 +HGNC:7473 MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding gene gene with protein product Approved 5p15.31 05p15.31 cblE 1998-04-20 2015-08-25 4552 ENSG00000124275 OTTHUMG00000090477 uc003jee.5 AF025794 XR_001742070 "CCDS3874|CCDS47190" Q9UBK8 9501215 MGI:1891037 RGD:1308671 MTRR database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=MTRR MTRR 602568 123574 1.16.1.8 +HGNC:20443 MTSS1 MTSS1, I-BAR domain containing protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "KIAA0429|MIMA|MIMB|MIM" missing in metastasis metastasis suppressor 1 I-BAR domain containing 1287 2003-03-11 2016-07-29 2016-10-05 9788 ENSG00000170873 OTTHUMG00000048189 uc003yrk.4 AF086645 NM_014751 "CCDS6353|CCDS64968|CCDS64969" O43312 "12482861|12082544" MGI:2384818 RGD:1309883 MTSS1 608486 +HGNC:25094 MTSS1L MTSS1L, I-BAR domain containing protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "ABBA-1|LOC92154|ABBA" actin-bundling protein with BAIAP2 homology metastasis suppressor 1 like I-BAR domain containing 1287 2008-12-05 2016-07-29 2016-07-29 92154 ENSG00000132613 OTTHUMG00000177023 uc002ezj.4 NM_138383 CCDS32476 Q765P7 12477932 MGI:3039591 RGD:1309731 MTSS1L 616951 +HGNC:7476 MTTAS mitochondrially encoded termination associate sequence other region Approved mitochondria mitochondria termination associate sequence 1989-10-11 2005-02-15 2008-08-27 +HGNC:7480 MTTER mitochondrially encoded transcription terminator other region Approved mitochondria mitochondria transcription terminator 1989-10-12 2005-02-15 2008-08-27 +HGNC:7482 MTTFH mitochondrially encoded transcription factor binding site H other region Approved mitochondria mitochondria mitochondrial transcription factor binding site 1989-10-11 2005-02-15 2008-08-27 +HGNC:7483 MTTFL mitochondrially encoded transcription factor binding site L other region Approved mitochondria mitochondria mitochondrial transcription factor binding site 1989-10-11 2005-02-15 2008-08-27 +HGNC:7484 MTTFX mitochondrially encoded transcription factor binding site X other region Approved mitochondria mitochondria mitochondrial transcription factor binding site 1989-10-11 2005-02-15 2008-08-27 +HGNC:7485 MTTFY mitochondrially encoded transcription factor binding site Y other region Approved mitochondria mitochondria mitochondrial transcription factor binding site 1989-10-11 2005-02-15 2008-08-27 +HGNC:7467 MTTP microsomal triglyceride transfer protein protein-coding gene gene with protein product Approved 4q23 04q23 ABL MTP "microsomal triglyceride transfer protein (large polypeptide, 88kD)|microsomal triglyceride transfer protein (large polypeptide, 88kDa)" 1994-12-07 2005-11-04 2005-11-04 2016-10-05 4547 ENSG00000138823 OTTHUMG00000131023 uc003hvc.5 NM_000253 "CCDS3651|CCDS75169" P55157 8111381 MGI:106926 RGD:1308388 MTTP 157147 123576 +HGNC:25457 MTURN maturin, neural progenitor differentiation regulator homolog protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "FLJ25903|Ells1" C7orf41 "chromosome 7 open reading frame 41|maturin, neural progenitor differentiation regulator homolog (Xenopus)" 2006-08-08 2013-10-07 2016-07-26 2016-10-05 222166 ENSG00000180354 OTTHUMG00000128559 NM_152793 CCDS5425 Q8N3F0 24095902 MGI:1915485 RGD:1549700 +HGNC:29789 MTUS1 microtubule associated tumor suppressor 1 protein-coding gene gene with protein product Approved 8p22 08p22 "MTSG1|KIAA1288|DKFZp586D1519|FLJ14295|ATIP1|MP44|ATBP|ICIS" "AT2 receptor-interacting protein|AT2R binding protein|mitochondrial tumor suppressor gene 1" mitochondrial tumor suppressor 1 2004-04-05 2009-10-20 2014-11-19 57509 ENSG00000129422 OTTHUMG00000163756 uc003wxt.4 AL096842 XM_372031 "CCDS43716|CCDS43717|CCDS43718|CCDS43719|CCDS55204|CCDS83254" Q9ULD2 "10574462|12692079" MGI:2142572 RGD:631381 MTUS1 609589 +HGNC:20595 MTUS2 microtubule associated tumor suppressor candidate 2 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "TIP150|CAZIP|ICIS" "+TIP of 150 kDa|cardiac zipper protein" KIAA0774 KIAA0774 2003-11-21 2009-10-20 2009-10-20 2014-11-18 23281 ENSG00000132938 OTTHUMG00000016657 uc001usm.5 AB018317 XM_166270 "CCDS41874|CCDS45022" Q5JR59 19543227 MGI:1915388 RGD:1562533 MTUS2 +HGNC:40924 MTUS2-AS1 MTUS2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 MTUS2 antisense RNA 1 (non-protein coding) 2011-05-09 2012-08-15 2014-11-19 100874107 ENSG00000179141 OTTHUMG00000016656 uc001usn.4 NR_046378 +HGNC:40923 MTUS2-AS2 MTUS2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 MTUS2 antisense RNA 2 (non-protein coding) 2011-05-09 2012-08-15 2014-11-19 100874106 ENSG00000236758 OTTHUMG00000016655 uc058wcq.1 +HGNC:7504 MTX1 metaxin 1 protein-coding gene gene with protein product Approved 1q22 01q22 MTXN MTX 1999-07-14 2016-10-05 4580 ENSG00000173171 OTTHUMG00000035708 uc001fjb.4 NM_198883 "CCDS1100|CCDS1101" Q13505 7753840 MGI:103025 RGD:1559791 MTX1 600605 +HGNC:7505 MTX1P1 metaxin 1 pseudogene 1 pseudogene pseudogene Approved 1q22 01q22 "MTXP|MTX1P" metaxin 1 pseudogene 1999-07-14 2010-02-26 2010-02-26 2014-11-19 4581 ENSG00000236675 OTTHUMG00000035843 U46921 NG_001160 7753840 PGOHUM00000245012 +HGNC:7506 MTX2 metaxin 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 1999-07-14 2014-11-19 10651 ENSG00000128654 OTTHUMG00000132514 uc002ukx.4 AF053551 NM_006554 CCDS2272 O75431 "10381257|17624330" MGI:1859652 RGD:1306473 MTX2 608555 +HGNC:24812 MTX3 metaxin 3 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 2004-08-18 2016-04-25 345778 ENSG00000177034 OTTHUMG00000162547 uc010jag.4 BX538064 XM_293971 "CCDS47239|CCDS54872" Q5HYI7 15087125 MGI:2686040 RGD:1583002 MTX3 +HGNC:7508 MUC1 mucin 1, cell surface associated protein-coding gene gene with protein product Approved 1q22 01q22 "CD227|PEM|ADMCKD|ADMCKD1|MCKD|MCD" "PUM|MCKD1" "mucin 1, transmembrane|medullary cystic kidney disease 1 (autosomal dominant)" "CD molecules|Mucins" "471|648" 1986-01-01 2006-03-14 2016-04-25 4582 ENSG00000185499 OTTHUMG00000035681 uc001fik.4 J05581 NM_002456 "CCDS1098|CCDS30882|CCDS30883|CCDS41408|CCDS41409|CCDS55640|CCDS55641|CCDS55642|CCDS72933|CCDS72934|CCDS72935|CCDS72936" P15941 "1697589|23396133" MGI:97231 RGD:3122 MUC1 158340 330730 S71.001 CD227 +HGNC:7512 MUC2 mucin 2, oligomeric mucus/gel-forming protein-coding gene gene with protein product Approved 11p15.5 11p15.5 mucin 2, intestinal/tracheal Mucins 648 1989-02-13 2006-03-14 2014-11-18 4583 ENSG00000198788 OTTHUMG00000156800 uc057xrp.1 L21998 NM_002457 Q02817 15081123 MGI:1339364 RGD:3123 MUC2 158370 I08.951 +HGNC:7513 MUC3A mucin 3A, cell surface associated protein-coding gene gene with protein product Approved 7q22.1 07q22.1 MUC3 mucin 3A, intestinal Mucins 648 1990-02-27 2006-03-14 2015-09-04 4584 ENSG00000169894 OTTHUMG00000157038 uc033aad.2 AF113616 XM_001725354 CCDS78262 Q02505 "2393399|10973822" MGI:3588263 MUC3A 158371 +HGNC:13384 MUC3B mucin 3B, cell surface associated protein-coding gene gene with protein product Approved 7q22 not on reference assembly 07q22 not on reference assembly mucin 3B Mucins 648 2000-09-27 2006-03-14 2015-02-09 57876 AJ291390 Q9H195 10973822 MUC3B 605633 +HGNC:7514 MUC4 mucin 4, cell surface associated protein-coding gene gene with protein product Approved 3q29 03q29 mucin 4, tracheobronchial Mucins 648 1991-05-22 2006-03-14 2014-11-18 4585 ENSG00000145113 OTTHUMG00000151827 uc021xjp.3 AJ276359 NM_018406 "CCDS3310|CCDS3311|CCDS54700" Q99102 1673336 MGI:2153525 RGD:621331 MUC4 158372 +HGNC:7515 MUC5AC mucin 5AC, oligomeric mucus/gel-forming protein-coding gene gene with protein product Approved 11p15.5 11p15.5 MUC5 mucin 5, subtypes A and C, tracheobronchial/gastric Mucins 648 1995-04-05 2006-03-14 2014-11-19 4586 ENSG00000215182 OTTHUMG00000154270 uc031xcx.2 "AJ001402|AJ298317" XM_001130382 CCDS76369 P98088 "7826332|9588204" MGI:104697 RGD:62001 MUC5AC 158373 I08.951 +HGNC:7516 MUC5B mucin 5B, oligomeric mucus/gel-forming protein-coding gene gene with protein product Approved 11p15.5 11p15.5 MG1 MUC5 mucin 5, subtype B, tracheobronchial Mucins 648 1991-12-03 2006-03-14 2016-04-25 727897 ENSG00000117983 OTTHUMG00000166494 uc001lta.4 "U95031|AF086604" XM_001126093 CCDS44515 Q9HC84 9804771 MGI:1921430 RGD:1561983 MUC5B 600770 268049 I08.953 +HGNC:7517 MUC6 mucin 6, oligomeric mucus/gel-forming protein-coding gene gene with protein product Approved 11p15.5 11p15.5 mucin 6, gastric Mucins 648 1992-09-29 2006-03-14 2014-11-19 4588 ENSG00000184956 OTTHUMG00000165140 uc001lsw.3 "U97698|AY312160" XM_290540 CCDS44513 Q6W4X9 7680650 MGI:2663233 RGD:628826 MUC6 158374 +HGNC:7518 MUC7 mucin 7, secreted protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "FLJ27047|MG2" mucin 7, salivary Mucins 648 1993-06-04 2006-03-14 2014-11-19 4589 ENSG00000171195 OTTHUMG00000129916 uc011cat.3 BC025688 NM_152291 CCDS3541 Q8TAX7 8838308 MUC7 158375 +HGNC:7519 MUC8 mucin 8 other unknown Approved 12q24.33 12q24.33 mucin 8, tracheobronchial Mucins 648 1995-05-15 2006-03-14 2015-08-06 100129528 U14383 XM_017020291 "8002930|9070607" 601932 +HGNC:7510 MUC12 mucin 12, cell surface associated protein-coding gene gene with protein product Approved 7q22.1 07q22.1 MUC11 mucin 11 Mucins 648 1999-05-14 2006-03-14 2016-10-05 10071 ENSG00000205277 OTTHUMG00000157042 uc003uxo.4 "AF147790|AF147791" XM_379904 CCDS55139 Q9UKN1 10463611 MUC12 604609 +HGNC:7511 MUC13 mucin 13, cell surface associated protein-coding gene gene with protein product Approved 3q21.2 03q21.2 DRCC1 "down-regulated in colon cancer 1|mucin 13, epithelial transmembrane" Mucins 648 2000-07-31 2006-03-14 2014-11-18 56667 ENSG00000173702 OTTHUMG00000159484 uc032sai.1 AF286113 NM_033049 CCDS33839 Q9H3R2 11278439 MGI:103190 RGD:708547 MUC13 612181 +HGNC:14956 MUC15 mucin 15, cell surface associated protein-coding gene gene with protein product Approved 11p14.3 11p14.3 Mucins 648 2001-11-26 2006-03-14 2014-11-18 143662 ENSG00000169550 OTTHUMG00000166112 uc001mqx.4 AJ417818 NM_145650 "CCDS7859|CCDS44556|CCDS44557" Q8N387 12047385 MGI:2442110 RGD:1589864 MUC15 608566 +HGNC:15582 MUC16 mucin 16, cell surface associated protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "CA125|FLJ14303" Mucins 648 2001-07-20 2006-03-14 2015-09-04 94025 ENSG00000181143 OTTHUMG00000169191 uc002mkp.3 AF414442 NM_024690 CCDS54212 Q8WXI7 11369781 MGI:1920982 RGD:1308422 MUC16 606154 +HGNC:16800 MUC17 mucin 17, cell surface associated protein-coding gene gene with protein product Approved 7q22.1 07q22.1 Mucins 648 2001-12-04 2006-03-14 2016-10-05 140453 ENSG00000169876 OTTHUMG00000157030 uc003uxp.2 AJ606307 NM_001040105 CCDS34711 Q685J3 11855812 MGI:1203527 MUC17 608424 +HGNC:14362 MUC19 mucin 19, oligomeric protein-coding gene gene with protein product Approved 12q12 12q12 FLJ35746 Mucins 648 2003-08-27 2006-03-14 2015-09-04 283463 ENSG00000205592 OTTHUMG00000060732 uc058msm.1 AY236870 XM_003403524 Q7Z5P9 12882755 MGI:2676278 RGD:1624205 MUC19 612170 +HGNC:23282 MUC20 mucin 20, cell surface associated protein-coding gene gene with protein product Approved 3q29 03q29 "FLJ14408|KIAA1359" Mucins 648 2003-12-09 2006-03-14 2014-11-19 200958 ENSG00000176945 OTTHUMG00000155823 uc032soi.2 AB037780 NM_152673 CCDS63877 Q8N307 14565953 MGI:2385039 RGD:1304865 MUC20 610360 +HGNC:51921 MUC20P1 mucin 20, cell surface associated pseudogene 1 pseudogene pseudogene Approved 3q29 03q29 2015-10-06 2015-10-06 651714 ENSG00000224769 OTTHUMG00000155856 NG_022290 PGOHUM00000299705 +HGNC:21661 MUC21 mucin 21, cell surface associated protein-coding gene gene with protein product Approved 6p21.33 06p21.33 bCX31G15.2 epiglycanin C6orf205 chromosome 6 open reading frame 205 Mucins 648 2004-01-16 2008-05-14 2008-05-14 2015-09-04 394263 ENSG00000204544 OTTHUMG00000031216 uc003nsh.3 AK056612 NM_001010909 CCDS34388 Q5SSG8 17977904 MUC21 616991 +HGNC:39755 MUC22 mucin 22 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 PBMUCL1 panbronchiolitis related mucin-like 1 Mucins 648 2011-08-11 2015-09-04 100507679 ENSG00000261272 OTTHUMG00000133673 uc063mxr.1 NM_001198815 CCDS59003 E2RYF6 20981447 MUC22 613917 +HGNC:30588 MUCL1 mucin like 1 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 SBEM small breast epithelial mucin 2007-07-02 2016-01-15 2016-01-15 118430 ENSG00000172551 OTTHUMG00000169815 uc001sgk.4 AF414087 NM_058173 CCDS8885 Q96DR8 12019145 MUCL1 610857 +HGNC:7522 MUCRX entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:25762 MUL1 mitochondrial E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "FLJ12875|MULAN|RNF218|MAPL|GIDE" "ring finger protein 218|mitochondria-anchored protein ligase|growth inhibition and death E3 ligase|mitochondrial ubiquitin ligase activator of NFKB 1" C1orf166 chromosome 1 open reading frame 166 Ring finger proteins 58 2005-07-19 2008-03-26 2010-09-17 2014-11-18 79594 ENSG00000090432 OTTHUMG00000002838 uc001bdi.5 BC014010 NM_024544 CCDS208 Q969V5 "18591963|12761501|18213395|18207745" MGI:1915600 RGD:1309944 MUL1 612037 +HGNC:29641 MUM1 melanoma associated antigen (mutated) 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MUM-1|EXPAND1" PWWP domain containing 1147 2004-02-12 2016-01-11 84939 ENSG00000160953 OTTHUMG00000180055 uc060qzb.1 AK075241 NM_032853 CCDS12062 Q2TAK8 "20347427|7644523" MGI:1915364 RGD:1308340 MUM1 +HGNC:26583 MUM1L1 MUM1 like 1 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 FLJ33516 melanoma associated antigen (mutated) 1-like 1 PWWP domain containing 1147 2004-09-15 2016-06-02 2016-06-02 139221 ENSG00000157502 OTTHUMG00000022146 uc004emf.2 AK090835 NM_152423 CCDS55469 Q5H9M0 MGI:2445062 RGD:1565148 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MUM1L1 MUM1L1 +HGNC:49202 MUPP major urinary protein, pseudogene pseudogene pseudogene Approved 9q32 09q32 2013-10-07 2013-10-07 100129193 ENSG00000237906 OTTHUMG00000020511 NG_016729 +HGNC:33742 MURC muscle related coiled-coil protein protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "cavin-4|CAVIN4" muscle-restricted coiled-coil protein muscle-related coiled-coil protein Cavins 1326 2009-02-06 2016-03-16 2016-10-12 347273 ENSG00000170681 OTTHUMG00000020368 uc004bba.5 BC090888 NM_001018116 CCDS35083 Q5BKX8 "18508909|18332105" MGI:1915266 RGD:1310395 LRG_760|http://www.lrg-sequence.org/LRG/LRG_760 MURC +HGNC:29814 MUS81 MUS81 structure-specific endonuclease subunit protein-coding gene gene with protein product Approved 11q13 11q13 "FLJ44872|SLX3" SLX3 structure-specific endonuclease subunit homolog (S. cerevisiae) "MUS81 endonuclease homolog (yeast)|MUS81 endonuclease homolog (S. cerevisiae)" 2004-01-27 2013-07-03 2014-11-19 80198 ENSG00000172732 OTTHUMG00000166633 uc001ofv.5 NM_025128 CCDS8115 Q96NY9 "11741546|12374758" MGI:1918961 RGD:1311957 MUS81 606591 +HGNC:7525 MUSK muscle associated receptor tyrosine kinase protein-coding gene gene with protein product Approved 9q31.3 09q31.3 muscle, skeletal, receptor tyrosine kinase "Receptor Tyrosine Kinases|I-set domain containing|Immunoglobulin like domain containing" "321|593|594" 1997-04-10 2016-04-19 2016-10-05 4593 ENSG00000030304 OTTHUMG00000020485 uc064vaj.1 AF006464 XM_005251994 "CCDS48005|CCDS75874" O15146 7546737 MGI:103581 RGD:3211 MUSK 601296 160311 objectId:1847 +HGNC:22144 MUSTN1 musculoskeletal, embryonic nuclear protein 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 Mustang 2004-03-10 2004-03-10 389125 ENSG00000272573 OTTHUMG00000159024 uc003dga.5 XM_371644 CCDS46846 Q8IVN3 MGI:1913425 RGD:727804 MUSTN1 +HGNC:7526 MUT methylmalonyl-CoA mutase protein-coding gene gene with protein product Approved 6p12.3 06p12.3 methylmalonyl Coenzyme A mutase 2001-06-22 2015-11-11 2016-10-05 4594 ENSG00000146085 OTTHUMG00000014814 uc003ozg.5 XM_005249143 CCDS4924 P22033 "2907507|9503014" MGI:97239 RGD:1587662 MUT database at LOVD-China|http://www.genomed.org/lovd/mma/home.php?select_db=MUT MUT 609058 123583 5.4.99.2 +HGNC:7527 MUTYH mutY DNA glycosylase protein-coding gene gene with protein product Approved 1p34.1 01p34.1 MYH mutY homolog (E. coli) DNA glycosylases 1024 1997-10-24 2015-06-23 2016-10-12 4595 ENSG00000132781 OTTHUMG00000007682 uc001cnm.4 U63329 NM_012222 "CCDS520|CCDS41320|CCDS41321|CCDS41322|CCDS72776|CCDS72777" Q9UIF7 "7823963|10684930" MGI:1917853 RGD:620045 "MUTYH @ LOVD|http://www.LOVD.nl/MUTYH|Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=MUTYH|LRG_220|http://www.lrg-sequence.org/LRG/LRG_220" MUTYH 604933 123585 +HGNC:7528 MUW53 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:25153 MVB12A multivesicular body subunit 12A protein-coding gene gene with protein product Approved 19p13.11 19p13.11 FLJ32495 FAM125A family with sequence similarity 125, member A ESCRT-I 1116 2006-08-15 2012-12-03 2012-12-03 2014-11-19 93343 ENSG00000141971 OTTHUMG00000166252 uc060viu.1 BC011840 NM_138401 CCDS12359 Q96EY5 "18005716|20654576|22232651" MGI:1920961 RGD:735220 +HGNC:23368 MVB12B multivesicular body subunit 12B protein-coding gene gene with protein product Approved 9q33.3 09q33.3 FLJ00001 "C9orf28|FAM125B" "chromosome 9 open reading frame 28|family with sequence similarity 125, member B" ESCRT-I 1116 2003-11-14 2012-12-03 2012-12-03 2016-10-05 89853 ENSG00000196814 OTTHUMG00000020687 uc004bqh.3 AK000001 XM_088525 "CCDS35142|CCDS48022" Q9H7P6 "18005716|20654576|22232651" MGI:1919793 RGD:1309709 +HGNC:7529 MVD mevalonate diphosphate decarboxylase protein-coding gene gene with protein product Approved 16q24.2 16q24.2 MPD "mevalonate pyrophosphate decarboxylase|diphosphomevalonate decarboxylase" mevalonate (diphospho) decarboxylase 1997-12-05 2015-12-04 2016-10-05 4597 ENSG00000167508 OTTHUMG00000137865 uc002flg.2 U49260 NM_002461 CCDS10968 P53602 8626466 MGI:2179327 RGD:621292 MVD 603236 444568 objectId:642 4.1.1.33 +HGNC:7530 MVK mevalonate kinase protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "LRBP|MK" "LH receptor mRNA-binding protein|mevalonic aciduria" mevalonate kinase (mevalonic aciduria) 1992-10-06 2008-01-30 2016-10-12 4598 ENSG00000110921 OTTHUMG00000169256 uc009zvk.4 M88468 NM_000431 "CCDS9132|CCDS73522" Q03426 1377680 MGI:107624 RGD:621295 "INFEVERS: The repertory of Familial Mediterranean Fever (FMF) and Hereditary Inflammatory Disorders Mutations|http://fmf.igh.cnrs.fr/infevers/|LRG_156|http://www.lrg-sequence.org/LRG/LRG_156" MVK 251170 123588 objectId:640 2.7.1.36 +HGNC:7531 MVP major vault protein protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "LRP|VAULT1" lung resistance-related protein 2000-07-31 2014-11-19 9961 ENSG00000013364 OTTHUMG00000048227 uc002duj.3 X79882 NM_005115 CCDS10656 Q14764 7585126 MGI:1925638 RGD:70932 MVP 605088 +HGNC:7532 MX1 MX dynamin like GTPase 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "IFI-78K|MxA" interferon-inducible protein p78 "myxovirus (influenza) resistance 1, homolog of murine (interferon-inducible protein p78)|myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse)" 1988-05-11 2016-02-15 2016-02-15 4599 ENSG00000157601 OTTHUMG00000086755 uc002yzh.5 XM_005260978 "CCDS13673|CCDS74796" P20591 17570575 "MGI:97243|MGI:97244" RGD:628821 MX1 147150 +HGNC:7533 MX2 MX dynamin like GTPase 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 MXB "interferon-regulated resistance GTP-binding protein MXB|second interferon-induced protein p78" "myxovirus (influenza) resistance 2, homolog of murine|myxovirus (influenza virus) resistance 2 (mouse)" 1988-08-12 2016-02-15 2016-02-15 4600 ENSG00000183486 OTTHUMG00000086753 uc002yzf.2 NM_002463 CCDS13672 P20592 "2481229|8798556" "MGI:97243|MGI:97244" MX2 147890 +HGNC:6761 MXD1 MAX dimerization protein 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "MAD1|bHLHc58" MAD "Basic helix-loop-helix proteins|MAX dimerization proteins" "420|637" 1994-02-16 2005-02-11 2016-10-05 4084 ENSG00000059728 OTTHUMG00000129646 uc010yqs.3 NM_002357 "CCDS1896|CCDS56123" Q05195 7829091 MGI:96908 RGD:1564525 MXD1 600021 +HGNC:14008 MXD3 MAX dimerization protein 3 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "MAD3|bHLHc13" "Basic helix-loop-helix proteins|MAX dimerization proteins" "420|637" 2002-11-12 2015-08-25 83463 ENSG00000213347 OTTHUMG00000130854 uc063kct.1 BC000745 NM_031300 "CCDS4416|CCDS47347" Q9BW11 MGI:104987 MXD3 609450 +HGNC:13906 MXD4 MAX dimerization protein 4 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "MAD4|MSTP149|MST149|bHLHc12" "Basic helix-loop-helix proteins|MAX dimerization proteins" "420|637" 2002-11-12 2015-08-25 10608 ENSG00000123933 OTTHUMG00000090243 uc003geu.2 NM_006454 CCDS3361 Q14582 8521822 MGI:104991 RGD:1305093 MXD4 +HGNC:7534 MXI1 MAX interactor 1, dimerization protein protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "MXD2|MAD2|MXI|bHLHc11" "MAX interacting protein 1|MAX interactor 1" "Basic helix-loop-helix proteins|MAX dimerization proteins" "420|637" 1994-02-16 2012-11-15 2016-10-05 4601 ENSG00000119950 OTTHUMG00000019033 uc001kyy.3 BC016678 NM_130439 "CCDS7563|CCDS7564|CCDS31284" P50539 7959753 MGI:97245 RGD:3128 MXI1 600020 +HGNC:7539 MXRA5 matrix remodeling associated 5 protein-coding gene gene with protein product Approved Xp22.33 Xp22.33 DKFZp564I1922 adlican matrix-remodelling associated 5 "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2000-06-15 2016-05-13 2016-05-13 25878 ENSG00000101825 OTTHUMG00000021083 uc004crg.6 AF245505 NM_015419 CCDS14124 Q9NR99 12101425 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MXRA5 MXRA5 300938 +HGNC:23932 MXRA5Y matrix remodeling associated 5, Y-linked (pseudogene) pseudogene pseudogene Approved Yq11.21 Yq11.21 ADLICANP adlican pseudogene "MXRA5P|MXRA5P1" "matrix-remodelling associated 5 pseudogene|matrix-remodelling associated 5 pseudogene 1" 2007-07-25 2014-05-07 2016-05-13 2016-05-13 286544 ENSG00000235649 OTTHUMG00000036377 NG_002806 12815422 PGOHUM00000233951 +HGNC:7541 MXRA7 matrix remodeling associated 7 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "FLJ46603|TMAP1|PS1TP1" matrix-remodelling associated 7 2000-06-15 2016-05-13 2016-05-13 439921 ENSG00000182534 OTTHUMG00000180370 uc002jsk.2 BC053983 NM_001008529 "CCDS32745|CCDS32746|CCDS45786" P84157 MGI:1914872 RGD:1594666 MXRA7 +HGNC:7542 MXRA8 matrix remodeling associated 8 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 DKFZp586E2023 limitrin matrix-remodelling associated 8 V-set domain containing 590 2000-06-15 2016-05-13 2016-05-13 54587 ENSG00000162576 OTTHUMG00000002973 uc001aew.5 BC006213 NM_032348 "CCDS24|CCDS59950|CCDS59951|CCDS59952" Q9BRK3 14603461 MGI:1922011 RGD:1359356 MXRA8 +HGNC:7544 MYADM myeloid associated differentiation marker protein-coding gene gene with protein product Approved 19q13.42 19q13.42 1998-09-22 2016-06-22 2016-06-22 91663 ENSG00000179820 OTTHUMG00000060775 uc002qcl.4 AF087882 NM_138373 CCDS12866 Q96S97 "10733104|12075932" MGI:1355332 RGD:727835 MYADM 609959 +HGNC:31019 MYADML myeloid associated differentiation marker like (pseudogene) pseudogene pseudogene Approved 2p22.3 02p22.3 myeloid-associated differentiation marker-like 2004-01-19 2016-06-22 2016-06-22 151325 ENSG00000239649 OTTHUMG00000099399 XM_087171 PGOHUM00000297831 +HGNC:34548 MYADML2 myeloid associated differentiation marker like 2 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 LOC255275 2008-10-15 2016-06-22 2016-06-22 255275 ENSG00000185105 OTTHUMG00000154388 uc010wvf.1 "AC137723|BC029306" XR_041347 CCDS45815 A6NDP7 MGI:1915765 RGD:1311499 MYADML2 +HGNC:7545 MYB MYB proto-oncogene, transcription factor protein-coding gene gene with protein product Approved 6q23.3 06q23.3 c-myb v-myb avian myeloblastosis viral oncogene homolog Myb/SANT domain containing 532 2001-06-22 2016-03-01 2016-10-05 4602 ENSG00000118513 OTTHUMG00000015629 uc063rpp.1 NM_001130172 "CCDS5174|CCDS47481|CCDS47482|CCDS55058|CCDS55059|CCDS55060|CCDS55061|CCDS55062" P10242 17599807 MGI:97249 RGD:1560020 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=MYB MYB 189990 263765 +HGNC:37457 MYB-AS1 MYB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q22-q23 06q22-q23 "RP1-32B1.3|NCRNA00209" non-protein coding RNA 209 "MYBAS|MYB-AS" "MYB antisense RNA (non-protein coding)|MYB antisense RNA 1 (non-protein coding)" 2009-10-15 2010-11-25 2012-08-15 2012-10-12 100873904 ENSG00000236703 OTTHUMG00000015627 uc063rqo.1 +HGNC:7546 MYBBP1A MYB binding protein 1a protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "P160|PAP2|FLJ37886" p53-activated protein-2 MYB binding protein (P160) 1a 1999-06-25 2016-03-31 2016-10-05 10514 ENSG00000132382 OTTHUMG00000090747 uc002fyb.5 AF147709 NM_014520 "CCDS11046|CCDS42238" Q9BQG0 10644447 MGI:106181 RGD:62062 MYBBP1A 604885 +HGNC:7547 MYBL1 MYB proto-oncogene like 1 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 "AMYB|A-myb" v-myb avian myeloblastosis viral oncogene homolog-like 1 Myb/SANT domain containing 532 1991-09-13 2016-03-01 2016-10-05 4603 ENSG00000185697 OTTHUMG00000164559 uc003xwj.4 X13294 XM_034274 "CCDS47867|CCDS55241" P10243 MGI:99925 RGD:1306940 MYBL1 159405 +HGNC:7548 MYBL2 MYB proto-oncogene like 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "BMYB|B-MYB" v-myb avian myeloblastosis viral oncogene homolog-like 2 Myb/SANT domain containing 532 1991-09-13 2016-03-01 2016-10-05 4605 ENSG00000101057 OTTHUMG00000033062 uc002xlb.3 NM_002466 "CCDS13322|CCDS63276" P10244 8812502 MGI:101785 RGD:1308474 MYBL2 601415 +HGNC:7549 MYBPC1 myosin binding protein C, slow type protein-coding gene gene with protein product Approved 12q23.2 12q23.2 myosin-binding protein C, slow-type "Fibronectin type III domain containing|I-set domain containing|Myosin binding proteins" "555|593|658" 1993-12-15 2001-11-28 2015-08-25 4604 ENSG00000196091 OTTHUMG00000170274 uc001tih.4 XM_006719405 "CCDS9083|CCDS9084|CCDS9085|CCDS55877|CCDS58268|CCDS58269|CCDS58270|CCDS58271|CCDS58272|CCDS58273" Q00872 "8375400|16918501" MGI:1336213 RGD:735102 MYBPC1 160794 227077 +HGNC:7550 MYBPC2 myosin binding protein C, fast type protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "MYBPCF|MYBPC|MGC163408" fast-type muscle myosin-binding-protein C myosin-binding protein C, fast-type "Fibronectin type III domain containing|I-set domain containing|Myosin binding proteins" "555|593|658" 1993-12-15 2001-11-28 2014-11-19 4606 ENSG00000086967 OTTHUMG00000183040 uc002psf.3 NM_004533 CCDS46152 Q14324 8375400 MGI:1336170 RGD:1311596 MYBPC2 160793 +HGNC:7551 MYBPC3 myosin binding protein C, cardiac protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "MYBP-C|FHC" CMH4 myosin-binding protein C, cardiac "Fibronectin type III domain containing|I-set domain containing|Myosin binding proteins" "555|593|658" 1995-05-30 2001-11-28 2016-10-12 4607 ENSG00000134571 OTTHUMG00000166986 uc058bdz.1 X84075 NM_000256 CCDS53621 Q14896 "7744002|8358441" MGI:102844 RGD:1305950 "FHC Mutation Database|http://www.angis.org.au/Databases/Heart/heartbreak.html|LRG_386|http://www.lrg-sequence.org/LRG/LRG_386" MYBPC3 600958 123595 objectId:2880 +HGNC:7552 MYBPH myosin binding protein H protein-coding gene gene with protein product Approved 1q32.1 01q32.1 myosin-binding protein H "Fibronectin type III domain containing|I-set domain containing|Myosin binding proteins" "555|593|658" 1993-06-18 2001-11-28 2015-09-04 4608 ENSG00000133055 OTTHUMG00000042121 uc001gzh.2 BC044226 NM_004997 CCDS30975 Q13203 8486381 MGI:1858196 RGD:620287 MYBPH 160795 +HGNC:30434 MYBPHL myosin binding protein H like protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "Fibronectin type III domain containing|I-set domain containing|Myosin binding proteins" "555|593|658" 2006-07-19 2016-06-22 2016-10-05 343263 ENSG00000221986 OTTHUMG00000012002 uc001dxk.1 AK129834 NM_001010985 CCDS30793 A2RUH7 MGI:1916003 RGD:1310511 MYBPHL +HGNC:7553 MYC v-myc avian myelocytomatosis viral oncogene homolog protein-coding gene gene with protein product Approved 8q24.21 08q24.21 "c-Myc|bHLHe39|MYCC" Basic helix-loop-helix proteins 420 2001-06-22 2013-07-09 2016-10-05 4609 ENSG00000136997 OTTHUMG00000128475 uc064qdk.2 NM_002467 CCDS6359 P01106 MGI:97250 RGD:3130 MYC 190080 159785 +HGNC:7554 MYCBP MYC binding protein protein-coding gene gene with protein product Approved 1p34.3 01p34.3 AMY-1 associate of myc-1 c-myc binding protein 1999-11-26 2013-07-09 2016-10-05 26292 ENSG00000214114 OTTHUMG00000000484 uc001ccs.4 AB007191 NM_012333 CCDS431 Q99417 9797456 MGI:1891750 RGD:2320727 MYCBP 606535 +HGNC:23386 MYCBP2 MYC binding protein 2, E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 13q22.3 13q22.3 "PAM|KIAA0916|FLJ10106" MYC binding protein 2 2004-04-01 2012-02-23 2016-10-05 23077 ENSG00000005810 OTTHUMG00000017105 uc058xol.1 AB020723 NM_015057 O75592 "9689053|15057823" MGI:2179432 RGD:1312048 MYCBP2 610392 +HGNC:41023 MYCBP2-AS1 MYCBP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q22.3 13q22.3 MYCBP2 antisense RNA 1 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874212 ENSG00000236051 OTTHUMG00000017104 uc058xor.1 NR_046716 +HGNC:41024 MYCBP2-AS2 MYCBP2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q22.3 13q22.3 MYCBP2 antisense RNA 2 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874213 ENSG00000229521 OTTHUMG00000017103 uc058xow.1 +HGNC:19677 MYCBPAP MYCBP associated protein protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "AMAP-1|DKFZp434N1415" 2004-02-19 2014-11-19 84073 ENSG00000136449 OTTHUMG00000157184 uc010wmr.3 BC028393 NM_032133 CCDS32680 Q8TBZ2 12151104 MGI:2388726 RGD:1359123 MYCBPAP 609835 +HGNC:7555 MYCL v-myc avian myelocytomatosis viral oncogene lung carcinoma derived homolog protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "LMYC|bHLHe38" "l-myc protein|myc-related gene from lung cancer|oncogene lmyc" MYCL1 v-myc avian myelocytomatosis viral oncogene homolog 1, lung carcinoma derived Basic helix-loop-helix proteins 420 2001-06-22 2013-07-09 2013-07-09 2016-10-05 4610 ENSG00000116990 OTTHUMG00000009243 NM_001033082 "CCDS30682|CCDS44117|CCDS53300" P12524 8978772 MGI:96799 RGD:1588591 164850 +HGNC:7558 MYCLK1 v-myc avian myelocytomatosis viral oncogene homolog-like 1 other unknown Approved 7p15 07p15 1991-05-15 2013-07-09 2013-07-09 4612 M64786 1612604 164865 +HGNC:7556 MYCLP1 MYCL pseudogene 1 pseudogene pseudogene Approved Xq22.3 Xq22.3 "MYCL2|MYCL1P1" "v-myc avian myelocytomatosis viral oncogene homolog 2|v-myc avian myelocytomatosis viral oncogene homolog 1 pseudogene 1" 1989-05-29 2013-07-09 2013-07-09 2014-11-19 4611 ENSG00000204053 OTTHUMG00000022162 NG_009866 P12525 310310 PGOHUM00000250084 +HGNC:48924 MYCLP2 MYCL pseudogene 2 pseudogene pseudogene Approved Xp11.21 Xp11.21 2013-07-09 2013-07-09 645136 ENSG00000228004 OTTHUMG00000021689 NG_021343 PGOHUM00000241346 +HGNC:7557 MYCLP3 MYCL pseudogene 3 pseudogene pseudogene Approved Xq27.3 Xq27.3 MYCL3 v-myc avian myelocytomatosis viral oncogene homolog 3 (pseudogene) 1999-05-17 2013-07-09 2013-07-09 2013-07-09 9964 Y16968 NG_001222 10100857 +HGNC:7559 MYCN v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog protein-coding gene gene with protein product Approved 2p24.3 02p24.3 "bHLHe37|N-myc|MYCNOT" NMYC Basic helix-loop-helix proteins 420 2001-06-22 2013-07-09 2014-11-18 4613 ENSG00000134323 OTTHUMG00000039579 uc002rci.4 BC002712 NM_005378 CCDS1687 P04198 MGI:97357 RGD:1584995 MYCN 164840 123600 +HGNC:16911 MYCNOS MYCN opposite strand non-coding RNA RNA, long non-coding Approved 2p24.3 02p24.3 "NCYM|N-CYM|MYCN-AS1" "MYCN antisense RNA 1|DNA binding transcriptional activator" "v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) opposite strand|MYCN opposite strand/antisense RNA (non-protein coding)|MYCN opposite strand/antisense RNA" Long non-coding RNAs 788 2004-02-04 2011-08-30 2014-01-07 2016-10-05 10408 ENSG00000233718 OTTHUMG00000151741 uc061gvl.1 S49953 NM_001329968 P40205 "1419902|24391509|26156430" 605374 +HGNC:32684 MYCNUT MYCN upstream transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved 2p24.3 02p24.3 lncUSMycN MYCNUN MYCN upstream neighbor Long non-coding RNAs 788 2013-08-14 2014-06-09 2014-06-09 2014-07-18 103752554 ENSG00000223850 OTTHUMG00000039578 W87755 NR_125783 24906397 615968 +HGNC:7560 MYCP entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-02-26 +HGNC:23172 MYCT1 myc target 1 protein-coding gene gene with protein product Approved 6q25.2 06q25.2 "MTLC|FLJ21269" 2003-10-15 2016-10-05 80177 ENSG00000120279 OTTHUMG00000015850 uc003qpc.5 AF527367 NM_025107 CCDS5239 Q8N699 12477932 MGI:1915882 RGD:1311467 MYCT1 616805 +HGNC:7562 MYD88 myeloid differentiation primary response 88 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 myeloid differentiation primary response gene (88) TIR domain containing 1296 1997-12-23 2012-11-15 2016-10-12 4615 ENSG00000172936 OTTHUMG00000131083 uc011ayi.3 U84408 NM_002468 "CCDS2674|CCDS54565|CCDS54566|CCDS54567|CCDS54568" Q99836 9013863 MGI:108005 RGD:735043 LRG_157|http://www.lrg-sequence.org/LRG/LRG_157 MYD88 602170 201114 +HGNC:16948 MYDGF myeloid derived growth factor protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "R33729_1|IL25|SF20|IL-25|IL-27" "IL27|IL27w|C19orf10" "interleukin 27 working designation|chromosome 19 open reading frame 10" 2002-04-03 2015-01-14 2016-06-01 2016-06-01 56005 ENSG00000074842 AF282264 NM_019107 CCDS12133 Q969H8 "17362502|21128247|25581518" MGI:2156020 RGD:1589603 606746 +HGNC:17940 MYEF2 myelin expression factor 2 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "MEF-2|FLJ11213|KIAA1341|HsT18564" RNA binding motif containing 725 2003-03-20 2015-07-22 50804 ENSG00000104177 OTTHUMG00000172120 uc001zwi.5 AB037762 NM_016132 "CCDS32230|CCDS73722" Q9P2K5 "10718198|2601707" MGI:104592 RGD:1306547 MYEF2 +HGNC:7563 MYEOV myeloma overexpressed protein-coding gene gene with protein product Approved 11q13.3 11q13.3 OCIM myeloma overexpressed (in a subset of t(11;14) positive multiple myelomas) 1999-12-02 2013-03-27 2015-07-22 26579 ENSG00000172927 OTTHUMG00000167836 uc001oov.3 AJ223366 NM_001293291 "CCDS8190|CCDS73340" Q96EZ4 10753852 MYEOV 605625 +HGNC:7565 MYF5 myogenic factor 5 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 bHLHc2 Basic helix-loop-helix proteins 420 1989-05-25 2016-10-05 4617 ENSG00000111049 OTTHUMG00000170166 uc001szg.3 NM_005593 CCDS9020 P13349 "8978788|12105204" MGI:97252 RGD:1308322 MYF5 159990 +HGNC:7566 MYF6 myogenic factor 6 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 "MRF4|bHLHc4" "muscle-specific regulatory factor 4|herculin" myogenic factor 6 (herculin) Basic helix-loop-helix proteins 420 1990-07-03 2015-12-04 2015-12-04 4618 ENSG00000111046 OTTHUMG00000170165 uc001szf.3 NM_002469 CCDS9019 P23409 8978788 MGI:97253 RGD:3134 MYF6 159991 123603 +HGNC:7567 MYH1 myosin heavy chain 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MYHSA1|MYHa|MyHC-2X/D|MGC133384" myosin heavy chain IIx/d myosin, heavy polypeptide 1, skeletal muscle, adult Myosin heavy chains 1098 1986-01-01 2016-06-22 2016-06-22 4619 ENSG00000109061 OTTHUMG00000130362 uc002gmo.4 NM_005963 CCDS11155 P12882 6304733 MGI:1339711 RGD:735061 MYH1 160730 +HGNC:7572 MYH2 myosin heavy chain 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MYH2A|MYHSA2|MyHC-IIa|MYHas8|MyHC-2A" IBM3 "myosin, heavy polypeptide 2, skeletal muscle, adult|inclusion body myopathy 3, autosomal dominant" Myosin heavy chains 1098 2001-06-22 2016-06-22 2016-06-22 4620 ENSG00000125414 OTTHUMG00000130363 uc002gmp.5 NM_017534 CCDS11156 Q9UKX2 "7545970|11889243" MGI:1339710 RGD:620354 MYH2 160740 123615 +HGNC:7573 MYH3 myosin heavy chain 3 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MYHC-EMB|MYHSE1|HEMHC|SMHCE" "myosin, skeletal, heavy chain, embryonic 1|muscle embryonic myosin heavy chain 3" myosin, heavy polypeptide 3, skeletal muscle, embryonic Myosin heavy chains 1098 2001-06-22 2016-06-22 2016-06-22 4621 ENSG00000109063 OTTHUMG00000130367 uc002gmq.3 NM_002470 CCDS11157 P11055 2726495 MGI:1339709 RGD:3138 MYH3 160720 123617 +HGNC:7574 MYH4 myosin heavy chain 4 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MYH2B|MyHC-2B|MyHC-IIb" myosin, heavy polypeptide 4, skeletal muscle Myosin heavy chains 1098 1986-01-01 2016-06-22 2016-06-22 4622 ENSG00000264424 OTTHUMG00000130365 uc002gmn.4 NM_017533 CCDS11154 Q9Y623 8518795 MGI:1339713 RGD:3139 MYH4 160742 +HGNC:7576 MYH6 myosin heavy chain 6 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 cardiomyopathy, hypertrophic 1 myosin, heavy polypeptide 6, cardiac muscle, alpha (cardiomyopathy, hypertrophic 1) Myosin heavy chains 1098 1986-01-01 2016-06-22 2016-10-12 4624 ENSG00000197616 OTTHUMG00000028753 uc001wjv.3 D00943 NM_002471 CCDS9600 P13533 2144212 MGI:97255 RGD:62029 LRG_389|http://www.lrg-sequence.org/LRG/LRG_389 MYH6 160710 123619 +HGNC:7577 MYH7 myosin heavy chain 7 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 CMD1S "CMH1|MPD1" "myopathy, distal 1|myosin, heavy polypeptide 7, cardiac muscle, beta" Myosin heavy chains 1098 1986-01-01 2016-06-22 2016-10-12 4625 ENSG00000092054 OTTHUMG00000028755 uc001wjx.4 M58018 NM_000257 CCDS9601 P12883 "2494889|8483915|15322983" MGI:2155600 RGD:62030 "FHC Mutation Database|http://www.angis.org.au/Databases/Heart/heartbreak.html|LRG_384|http://www.lrg-sequence.org/LRG/LRG_384" MYH7 160760 123621 +HGNC:15906 MYH7B myosin heavy chain 7B protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "KIAA1512|dJ756N5.1|MYH14|MHC14" myosin, heavy polypeptide 7B, cardiac muscle, beta Myosin heavy chains 1098 2001-06-21 2016-06-22 2016-10-05 57644 ENSG00000078814 OTTHUMG00000032320 uc061wko.1 AB040945 NM_020884 CCDS42869 A7E2Y1 "11919279|15014174" MGI:3710243 RGD:1307994 MYH7B 609928 360173 +HGNC:7578 MYH8 myosin heavy chain 8 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MyHC-peri|MyHC-pn" myosin, heavy polypeptide 8, skeletal muscle, perinatal Myosin heavy chains 1098 1990-03-12 2016-06-22 2016-06-22 4626 ENSG00000133020 OTTHUMG00000130361 uc002gmm.3 NM_002472 CCDS11153 P13535 2373371 MGI:1339712 RGD:620356 MYH8 160741 123626 +HGNC:7579 MYH9 myosin heavy chain 9 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "NMMHCA|NMHC-II-A|MHA|FTNS|EPSTS" nonmuscle myosin heavy chain II-A DFNA17 myosin, heavy polypeptide 9, non-muscle Myosin heavy chains 1098 1990-03-12 2016-06-22 2016-10-12 4627 ENSG00000100345 OTTHUMG00000030429 uc003apg.4 NM_002473 CCDS13927 P35579 "1860190|11023810" MGI:107717 RGD:3140 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|LRG_567|http://www.lrg-sequence.org/LRG/LRG_567" MYH9 160775 123628 +HGNC:7568 MYH10 myosin heavy chain 10 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 NMMHCB myosin, heavy polypeptide 10, non-muscle Myosin heavy chains 1098 1991-05-15 2016-06-22 2016-10-05 4628 ENSG00000133026 OTTHUMG00000108195 uc002gll.5 M69181 XM_011523878 "CCDS11144|CCDS58515|CCDS73984" P35580 1860190 MGI:1930780 RGD:71000 MYH10 160776 +HGNC:7569 MYH11 myosin heavy chain 11 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 "SMMHC|SMHC" myosin, heavy polypeptide 11, smooth muscle Myosin heavy chains 1098 1991-09-13 2016-06-22 2016-06-22 4629 ENSG00000133392 OTTHUMG00000129935 uc002ddy.4 X69292 NM_001040113 "CCDS10565|CCDS10566|CCDS45423|CCDS45424" P35749 7684189 MGI:102643 RGD:3136 MYH11 160745 123606 +HGNC:7571 MYH13 myosin heavy chain 13 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 MyHC-eo "extraocular muscle myosin heavy chain|extraocular myosin heavy chain" myosin, heavy polypeptide 13, skeletal muscle Myosin heavy chains 1098 1998-12-09 2016-06-22 2016-06-22 8735 ENSG00000006788 OTTHUMG00000177987 uc060bfq.1 AF075248 NM_003802 CCDS45613 Q9UKX3 9806854 MGI:1339967 RGD:3137 MYH13 603487 +HGNC:23212 MYH14 myosin heavy chain 14 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "FLJ13881|KIAA2034|MHC16|MYH17" DFNA4 "myosin, heavy polypeptide 14|myosin, heavy chain 14, non-muscle" Myosin heavy chains 1098 2003-10-15 2016-06-22 2016-06-22 79784 ENSG00000105357 OTTHUMG00000183034 uc010enu.2 AY165122 NM_024729 "CCDS46151|CCDS54295|CCDS59411" Q7Z406 "12909352|15015131|17940200" MGI:1919210 RGD:1306821 MYH14 608568 123610 +HGNC:31073 MYH15 myosin heavy chain 15 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 KIAA1000 myosin, heavy polypeptide 15 Myosin heavy chains 1098 2004-07-28 2016-06-22 2016-10-05 22989 ENSG00000144821 OTTHUMG00000159226 uc003dxa.1 AB023217 XM_036988 CCDS43127 Q9Y2K3 "15014174|15042088" MGI:3643515 RGD:1565858 MYH15 609929 +HGNC:31038 MYH16 myosin heavy chain 16 pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 "MHC20|MYH16P" sarcomeric myosin MYH5 "myosin, heavy polypeptide 5|myosin, heavy polypeptide 16|myosin, heavy chain 16" Myosin heavy chains 1098 2004-01-23 2016-06-22 2016-06-22 84176 ENSG00000002079 OTTHUMG00000154426 BK001410 NR_002147 Q9H6N6 "11919279|15014174" MYH16 608580 PGOHUM00000263185 +HGNC:50609 MYHAS myosin heavy chain gene cluster antisense RNA non-coding RNA RNA, long non-coding Approved 17p13.1 17p13.1 2014-05-21 2014-05-27 2014-05-27 100128560 ENSG00000272975 OTTHUMG00000186260 AK097500 NR_125367 +HGNC:7580 MYHK entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-09 +HGNC:7582 MYL1 myosin light chain 1 protein-coding gene gene with protein product Approved 2q34 02q34 "myosin, light polypeptide 1, alkali; skeletal, fast|myosin, light chain 1, alkali; skeletal, fast" "Myosin light chains|EF-hand domain containing" "657|863" 1986-01-01 2015-11-13 2015-11-13 4632 ENSG00000168530 OTTHUMG00000132992 uc002veb.4 NM_079420 "CCDS2390|CCDS2391" P05976 "2304459|3422212" MGI:97269 RGD:1598796 MYL1 160780 +HGNC:7583 MYL2 myosin light chain 2 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 CMH10 cardiac ventricular myosin light chain 2 "myosin, light polypeptide 2, regulatory, cardiac, slow|myosin, light chain 2, regulatory, cardiac, slow" "Myosin light chains|EF-hand domain containing" "657|863" 1991-11-21 2015-11-13 2016-10-12 4633 ENSG00000111245 OTTHUMG00000169535 uc001try.5 NM_000432 CCDS31901 P10916 1386340 MGI:97272 RGD:1564245 "FHC Mutation Database|http://www.angis.org.au/Databases/Heart/heartbreak.html|LRG_393|http://www.lrg-sequence.org/LRG/LRG_393" MYL2 160781 123631 +HGNC:7584 MYL3 myosin light chain 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CMH8|VLC1|MLC1V|MLC1SB" "myosin, light polypeptide 3, alkali; ventricular, skeletal, slow|myosin, light chain 3, alkali; ventricular, skeletal, slow" "Myosin light chains|EF-hand domain containing" "657|863" 1986-01-01 2015-11-13 2016-10-12 4634 ENSG00000160808 OTTHUMG00000133516 uc003cql.2 NM_000258 CCDS2746 P08590 "1479618|2784124" MGI:97268 RGD:3142 LRG_395|http://www.lrg-sequence.org/LRG/LRG_395 MYL3 160790 123634 +HGNC:7585 MYL4 myosin light chain 4 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "ALC1|AMLC|GT1|PRO1957" myosin, atrial/fetal muscle, light chain "myosin, light polypeptide 4, alkali; atrial, embryonic|myosin, light chain 4, alkali; atrial, embryonic" "Myosin light chains|EF-hand domain containing" "657|863" 1986-01-01 2015-11-13 2015-11-13 4635 ENSG00000198336 OTTHUMG00000178232 uc060gng.1 NM_001002841 CCDS11510 P12829 3417683 MGI:97267 RGD:1591197 MYL4 160770 +HGNC:7586 MYL5 myosin light chain 5 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "myosin, light polypeptide 5, regulatory|myosin, light chain 5, regulatory" "Myosin light chains|EF-hand domain containing" "657|863" 1992-07-20 2015-11-13 2016-10-05 4636 ENSG00000215375 OTTHUMG00000159971 uc003gav.4 NM_002477 CCDS43197 Q02045 1284596 MYL5 160782 +HGNC:7587 MYL6 myosin light chain 6 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "ESMLC|MLC3NM|MLC1SM" "myosin, light polypeptide 6, alkali, smooth muscle and non-muscle|myosin, light chain 6, alkali, smooth muscle and non-muscle" "Myosin light chains|EF-hand domain containing" "657|863" 1994-07-21 2015-11-13 2015-11-13 4637 ENSG00000092841 OTTHUMG00000170200 uc001sjw.3 AB046613 NM_021019 "CCDS8906|CCDS31834" P60660 "8188229|2304459|2722814" MGI:109318 RGD:1589019 MYL6 609931 +HGNC:29823 MYL6B myosin light chain 6B protein-coding gene gene with protein product Approved 12q13.2 12q13.2 MLC1SA myosin light chain 1 slow a "myosin, light polypeptide 6B, alkali, smooth muscle and non-muscle|myosin, light chain 6B, alkali, smooth muscle and non-muscle" "Myosin light chains|EF-hand domain containing" "657|863" 2006-03-13 2015-11-13 2015-11-13 140465 ENSG00000196465 OTTHUMG00000170199 uc058pii.1 M31211 NM_002475 CCDS8905 P14649 "2602161|2304459" MGI:1917789 RGD:1560334 MYL6B 609930 +HGNC:51647 MYL6BP1 myosin light chain 6B pseudogene 1 pseudogene pseudogene Approved 2q34 02q34 myosin, light chain 6B pseudogene 1 2015-04-21 2015-11-13 2015-11-13 100422437 ENSG00000228380 OTTHUMG00000154704 NG_023319 PGOHUM00000298308 +HGNC:7588 MYL6P1 myosin light chain 6 pseudogene 1 pseudogene pseudogene Approved 21q22.3 21q22.3 MYL6P "myosin, light polypeptide 6, pseudogene|myosin, light chain 6, pseudogene|myosin, light chain 6 pseudogene 1" 2000-05-23 2010-02-26 2015-11-13 2015-11-13 54043 ENSG00000226543 OTTHUMG00000086885 NG_000917 PGOHUM00000297271 +HGNC:23772 MYL6P2 myosin light chain 6 pseudogene 2 pseudogene pseudogene Approved 21q22.2 21q22.2 myosin, light chain 6 pseudogene 2 2010-02-26 2015-11-13 2015-11-13 100431168 ENSG00000235808 OTTHUMG00000086714 AF121781 NG_021232 PGOHUM00000297384 +HGNC:37812 MYL6P3 myosin light chain 6 pseudogene 3 pseudogene pseudogene Approved 10q21.3 10q21.3 myosin, light chain 6 pseudogene 3 2010-02-26 2015-11-13 2015-11-13 100129561 ENSG00000227173 OTTHUMG00000018327 NG_022957 PGOHUM00000289879 +HGNC:37813 MYL6P4 myosin light chain 6 pseudogene 4 pseudogene pseudogene Approved 7q34 07q34 myosin, light chain 6 pseudogene 4 2010-02-26 2015-11-13 2015-11-13 642627 ENSG00000240677 OTTHUMG00000157638 NG_009428 PGOHUM00000302967 +HGNC:51646 MYL6P5 myosin light chain 6 pseudogene 5 pseudogene pseudogene Approved 17q24.3 17q24.3 myosin, light chain 6 pseudogene 5 2015-04-21 2015-11-13 2015-11-13 124685 ENSG00000228118 OTTHUMG00000132241 NG_030302 PGOHUM00000294544 +HGNC:21719 MYL7 myosin light chain 7 protein-coding gene gene with protein product Approved 7p13 07p13 "MYLC2A|MYL2A" "myosin, light polypeptide 7, regulatory|myosin, light chain 7, regulatory" "Myosin light chains|EF-hand domain containing" "657|863" 2003-10-14 2015-11-13 2016-10-05 58498 ENSG00000106631 OTTHUMG00000023125 uc003tkg.4 M94547 NM_021223 CCDS5478 Q01449 8207020 MGI:107495 RGD:1308262 MYL7 613993 +HGNC:7589 MYL8P myosin light chain 8, pseudogene pseudogene pseudogene Approved 6p21.32 06p21.32 BING3 "myosin, light polypeptide 8, pseudogene|myosin, light chain 8, pseudogene" Myosin light chains 657 2000-07-19 2015-11-13 2015-11-13 442204 ENSG00000229596 OTTHUMG00000031181 NG_005310 9545376 PGOHUM00000301765 +HGNC:15754 MYL9 myosin light chain 9 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "MYRL2|MLC2|LC20|MRLC1" "myosin regulatory light chain 2, smooth muscle isoform|myosin regulatory light chain 1" "myosin, light polypeptide 9, regulatory|myosin, light chain 9, regulatory" "Myosin light chains|EF-hand domain containing" "657|863" 2001-09-17 2015-11-13 2015-11-13 10398 ENSG00000101335 OTTHUMG00000032387 uc002xfl.3 J02854 NM_006097 "CCDS13276|CCDS13277" P24844 2526655 MGI:2138915 RGD:1311235 MYL9 609905 +HGNC:29825 MYL10 myosin light chain 10 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MGC3479|MYLC2PL|PLRLC" myosin, light chain 10, regulatory "Myosin light chains|EF-hand domain containing" "657|863" 2009-03-06 2015-11-13 2015-11-13 93408 ENSG00000106436 OTTHUMG00000157137 uc003uyr.3 BC002778 NM_138403 CCDS34713 Q9BUA6 1628631 MGI:1891705 RGD:1561258 MYL10 +HGNC:16701 MYL12A myosin light chain 12A protein-coding gene gene with protein product Approved 18p11.31 18p11.31 "MLCB|MYL2B|MRLC3|MRCL3" myosin regulatory light chain 3 "myosin, light polypeptide, regulatory, non-sarcomeric (20kD)|myosin, light chain 12A, regulatory, non-sarcomeric" "Myosin light chains|EF-hand domain containing" "657|863" 2009-03-06 2015-11-13 2015-11-13 10627 ENSG00000101608 OTTHUMG00000131509 uc060mxh.1 X54304 NM_006471 "CCDS11830|CCDS77145" P19105 2216787 MGI:1914518 RGD:1309537 MYL12A +HGNC:51648 MYL12AP1 myosin light chain 12A pseudogene 1 pseudogene pseudogene Approved 8q22.1 08q22.1 myosin, light chain 12A pseudogene 1 2015-04-21 2015-11-13 2015-11-13 157667 ENSG00000254387 OTTHUMG00000164355 NG_022427 PGOHUM00000303626 +HGNC:29827 MYL12B myosin light chain 12B protein-coding gene gene with protein product Approved 18p11.31 18p11.31 MRLC2 myosin regulatory light chain 2 myosin, light chain 12B, regulatory "Myosin light chains|EF-hand domain containing" "657|863" 2009-03-06 2015-11-13 2015-11-13 103910 ENSG00000118680 OTTHUMG00000131510 uc002klt.5 AY320408 NM_033546 CCDS11831 O14950 11942626 MGI:107494 RGD:628855 MYL12B 609211 +HGNC:51649 MYL12BP1 myosin light chain 12B pseudogene 1 pseudogene pseudogene Approved 15q15.2 15q15.2 myosin, light chain 12B pseudogene 1 2015-04-21 2015-11-13 2015-11-13 645094 ENSG00000260490 OTTHUMG00000175798 NG_022126 PGOHUM00000293222 +HGNC:51650 MYL12BP2 myosin light chain 12B pseudogene 2 pseudogene pseudogene Approved 4q35.1 04q35.1 myosin, light chain 12B pseudogene 2 2015-04-21 2015-11-13 2015-11-13 391722 ENSG00000227765 OTTHUMG00000160610 PGOHUM00000300087 +HGNC:21155 MYLIP myosin regulatory light chain interacting protein protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "MIR|IDOL" E3 ubiquitin ligase-inducible degrader of the low density lipoprotein receptor FERM domain containing 1293 2003-11-26 2015-08-25 29116 ENSG00000007944 OTTHUMG00000016405 uc003nbq.4 AF187016 NM_013262 CCDS4536 Q8WY64 "10593918|11162443|19688294" MGI:2388271 RGD:1305761 MYLIP 610082 421436 +HGNC:7590 MYLK myosin light chain kinase protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "MLCK|smMLCK|MYLK1|MLCK1" smooth muscle myosin light chain kinase myosin, light polypeptide kinase "Fibronectin type III domain containing|I-set domain containing" "555|593" 1995-07-14 2008-01-23 2016-10-05 4638 ENSG00000065534 OTTHUMG00000141304 uc062ncr.1 X85337 NM_053025 "CCDS3023|CCDS43141|CCDS46896|CCDS46897|CCDS58849" Q15746 8575746 MGI:894806 RGD:1310915 MYLK 600922 246653 objectId:1552 2.7.11.18 +HGNC:42440 MYLK-AS1 MYLK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q21.1 03q21.1 MYLK antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2015-11-13 100506826 ENSG00000239523 OTTHUMG00000159536 uc062ncm.1 NR_121654 +HGNC:40387 MYLK-AS2 MYLK antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q21.1 03q21.1 MYLK antisense RNA 2 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100873940 ENSG00000250174 OTTHUMG00000159965 uc062ndc.1 NR_046629 +HGNC:16243 MYLK2 myosin light chain kinase 2 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "skMLCK|KMLC|MLCK2" skeletal muscle myosin light chain kinase myosin light chain kinase 2, skeletal muscle 2001-07-31 2008-01-23 2016-10-12 85366 ENSG00000101306 OTTHUMG00000032194 uc061wct.1 AF325549 NM_033118 CCDS13191 Q9H1R3 MGI:2139434 RGD:620934 LRG_392|http://www.lrg-sequence.org/LRG/LRG_392 MYLK2 606566 123637 objectId:1553 2.7.11.18 +HGNC:29826 MYLK3 myosin light chain kinase 3 protein-coding gene gene with protein product Approved 16q11.2 16q11.2 "caMLCK|MLCK" MLC kinase 2008-01-23 2014-11-18 91807 ENSG00000140795 OTTHUMG00000132543 uc002eei.5 AJ247087 NM_182493 "CCDS10723|CCDS76861" Q32MK0 17885681 MGI:2443063 RGD:1305801 MYLK3 612147 objectId:2110 +HGNC:27972 MYLK4 myosin light chain kinase family member 4 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 SgK085 caMLCK like myosin light chain kinase family, member 4 2008-01-23 2015-11-13 2015-11-13 340156 ENSG00000145949 OTTHUMG00000014121 uc003mty.5 NM_001012418 CCDS34330 Q86YV6 MGI:3643758 RGD:6494757 MYLK4 objectId:2111 +HGNC:7591 MYLKP1 myosin light chain kinase pseudogene 1 pseudogene pseudogene Approved 3p12.3 03p12.3 MYLKP "myosin, light polypeptide kinase pseudogene|myosin light chain kinase pseudogene|myosin light chain kinase pseudogene 1|myosin light chain kinase pseudogene 1 (functional)" Transcribed pseudogenes with published function 859 1999-04-09 2010-02-26 2016-01-29 2016-01-29 9430 ENSG00000228868 OTTHUMG00000158822 AF042089 NG_009879 "10036190|21441351" PGOHUM00000250243 +HGNC:7592 MYLL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-11-13 +HGNC:29824 MYLPF myosin light chain, phosphorylatable, fast skeletal muscle protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "MRLC2|HUMMLC2B|MYL11" "myosin, light chain 11, regulatory|myosin regulatory light chain 2" "Myosin light chains|EF-hand domain containing" "657|863" 2009-03-06 2016-07-18 29895 ENSG00000180209 OTTHUMG00000132399 uc002dxv.2 AF363061 NM_013292 CCDS10677 Q96A32 6179945 MGI:97273 RGD:3141 MYLPF +HGNC:16401 MYMY1 moyamoya disease 1 phenotype phenotype only Approved 3p26-p24.2 03p26-p24.2 MYMY Moyamoya disease 1 2001-08-14 2003-05-16 2004-11-22 2004-11-22 50960 9973290 252350 +HGNC:20769 MYMY3 moyamoya disease 3 phenotype phenotype only Approved 8q23 08q23 2004-11-22 2014-01-30 493818 15362573 608796 +HGNC:14955 MYNN myoneurin protein-coding gene gene with protein product Approved 3q26.31 03q26.31 "SBBIZ1|ZBTB31|ZNF902" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2001-04-26 2014-11-19 55892 ENSG00000085274 OTTHUMG00000184027 uc003fft.4 AF148848 NM_018657 "CCDS3207|CCDS54671" Q9NPC7 10873615 MGI:1931415 RGD:1307889 MYNN 606042 402 +HGNC:7595 MYO1A myosin IA protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "MYHL|DFNA48" Myosins, class I 1097 1996-04-04 2016-05-26 4640 ENSG00000166866 OTTHUMG00000149899 uc001smw.5 L29137 NM_005379 CCDS8929 Q9UBC5 "8884266|12736868" MGI:107732 RGD:3135 MYO1A 601478 166803 +HGNC:7596 MYO1B myosin IB protein-coding gene gene with protein product Approved 2q32.3 02q32.3 myr1 Myosins, class I 1097 1996-04-04 2016-10-05 4430 ENSG00000128641 OTTHUMG00000132718 uc010fsg.3 L29138 NM_012223 "CCDS2311|CCDS46477|CCDS82546" O43795 "8022818|8449985" MGI:107752 RGD:70994 MYO1B 606537 +HGNC:7597 MYO1C myosin IC protein-coding gene gene with protein product Approved 17p13.3 17p13.3 myr2 Myosins, class I 1097 1996-04-04 2014-11-19 4641 ENSG00000197879 OTTHUMG00000090323 uc002fso.4 X98507 NM_001080779 "CCDS11003|CCDS42226|CCDS45562" O00159 9119401 MGI:106612 RGD:620443 MYO1C 606538 407527 +HGNC:7598 MYO1D myosin ID protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "KIAA0727|myr4|PPP1R108" protein phosphatase 1, regulatory subunit 108 "Protein phosphatase 1 regulatory subunits|Myosins, class I" "694|1097" 1996-04-04 2015-09-04 4642 ENSG00000176658 OTTHUMG00000179636 uc002hho.2 AB018270 XM_017024685 "CCDS32615|CCDS76991|CCDS76992" O94832 8884266 MGI:107728 RGD:621321 MYO1D 606539 +HGNC:7599 MYO1E myosin IE protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "MYO1C|HuncM-IC|MGC104638" myosin-IC Myosins, class I 1097 1996-04-04 2015-07-22 4643 ENSG00000157483 OTTHUMG00000171944 uc002aga.5 U14391 NM_004998 CCDS32254 Q12965 8884266 MGI:106621 RGD:3144 MYO1E 601479 270032 +HGNC:7600 MYO1F myosin IF protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Myosins, class I 1097 1996-04-04 2016-10-05 4542 ENSG00000142347 OTTHUMG00000156005 uc002mkg.4 X98411 XM_017026821 CCDS42494 O00160 "9119401|8884266" MGI:107711 RGD:1309750 MYO1F 601480 +HGNC:13880 MYO1G myosin IG protein-coding gene gene with protein product Approved 7p13 07p13 HA-2 minor histocompatibility antigen HA-2 "Minor histocompatibility antigens|Myosins, class I" "870|1097" 2000-11-28 2015-09-04 64005 ENSG00000136286 OTTHUMG00000155821 uc003tmh.3 AF380932 XM_017012503 CCDS34629 B0I1T2 MGI:1927091 RGD:1306016 MYO1G 600642 +HGNC:13879 MYO1H myosin IH protein-coding gene gene with protein product Approved 12q24.11 12q24.11 FLJ37587 Myosins, class I 1097 2000-11-28 2014-11-19 283446 ENSG00000174527 OTTHUMG00000169252 uc010sxn.1 NM_173597 CCDS53826 Q8N1T3 MGI:1914674 RGD:1596237 MYO1H 614636 +HGNC:7601 MYO3A myosin IIIA protein-coding gene gene with protein product Approved 10p12.1 10p12.1 DFNB30 deafness, autosomal recessive 30 Myosins, class III 1099 2000-05-16 2004-05-19 2016-10-05 53904 ENSG00000095777 OTTHUMG00000017837 uc001isn.3 AF229172 NM_017433 CCDS7148 Q8NEV4 10936054 MGI:2183924 RGD:1560083 MYO3A 606808 160313 objectId:2112 +HGNC:15576 MYO3B myosin IIIB protein-coding gene gene with protein product Approved 2q31.1 02q31.1 Myosins, class III 1099 2001-12-07 2016-10-05 140469 ENSG00000071909 OTTHUMG00000154002 uc002ufz.4 XM_011510654 "CCDS42773|CCDS46446" Q8WXR4 MGI:2448580 RGD:1560313 MYO3B 610040 objectId:2113 +HGNC:7602 MYO5A myosin VA protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "MYO5|GS1|MYR12" "myosin, heavy polypeptide kinase|myosin heavy chain 12|myoxin|myosin V" MYH12 "myosin VA (heavy polypeptide 12, myoxin)|myosin VA (heavy chain 12, myoxin)" Myosins, class V 1100 1993-09-23 2015-09-09 2016-10-12 4644 ENSG00000197535 OTTHUMG00000137383 uc002aby.4 NM_000259 "CCDS42037|CCDS45262" Q9Y4I1 "8188282|8022818" MGI:105976 RGD:3143 "MYO5Abase: Mutation registry for Griscelli syndrome, type 1 (GS1)|http://structure.bmc.lu.se/idbase/MYO5Abase/|LRG_86|http://www.lrg-sequence.org/LRG/LRG_86" MYO5A 160777 123645 +HGNC:7603 MYO5B myosin VB protein-coding gene gene with protein product Approved 18q 18q KIAA1119 Myosins, class V 1100 1996-04-04 2015-09-04 4645 ENSG00000167306 OTTHUMG00000179843 uc002leb.3 AB032945 NM_001080467 CCDS42436 Q9ULV0 "8884266|17462998" MGI:106598 RGD:621347 MYO5B 606540 171089 +HGNC:38495 MYO5BP1 myosin VB pseudogene 1 pseudogene pseudogene Approved 9p11.2 09p11.2 2010-05-18 2015-02-02 441420 ENSG00000274680 OTTHUMG00000188455 XR_036959 PGOHUM00000304213 +HGNC:38496 MYO5BP2 myosin VB pseudogene 2 pseudogene pseudogene Approved 9q13 09q13 2010-05-18 2016-10-05 392335 ENSG00000238245 OTTHUMG00000058165 NG_021658 PGOHUM00000236583 +HGNC:38497 MYO5BP3 myosin VB pseudogene 3 pseudogene pseudogene Approved 9q13 09q13 2010-05-18 2016-10-05 441442 ENSG00000228656 OTTHUMG00000058679 NG_021621 PGOHUM00000236170 +HGNC:7604 MYO5C myosin VC protein-coding gene gene with protein product Approved 15q21.2 15q21.2 MGC74969 myosin 5C Myosins, class V 1100 2000-07-31 2015-07-22 55930 ENSG00000128833 OTTHUMG00000172630 uc010bff.4 AF272390 NM_018728 CCDS42036 Q9NQX4 11870218 MGI:2442485 RGD:1309994 MYO5C 610022 +HGNC:7605 MYO6 myosin VI protein-coding gene gene with protein product Approved 6q14.1 06q14.1 KIAA0389 "DFNA22|DFNB37" deafness, autosomal recessive 37 Myosins, class VI 1101 1996-04-04 2004-05-19 2016-10-12 4646 ENSG00000196586 OTTHUMG00000015061 uc003pih.2 "U90236|AB002387" NM_004999 "CCDS34487|CCDS75481" Q9UM54 "9259267|11468689" MGI:104785 RGD:1560646 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=MYO6|LRG_438|http://www.lrg-sequence.org/LRG/LRG_438" MYO6 600970 123648 +HGNC:7606 MYO7A myosin VIIA protein-coding gene gene with protein product Approved 11q13.5 11q13.5 NSRD2 "USH1B|DFNB2|DFNA11" myosin VIIA (Usher syndrome 1B (autosomal recessive, severe)) "A-kinase anchoring proteins|Myosins, class VII|FERM domain containing" "396|1102|1293" 1992-06-08 2005-09-12 2015-07-01 4647 ENSG00000137474 OTTHUMG00000152822 uc001oyc.3 U39226 NM_000260 "CCDS53683|CCDS53684|CCDS53685" Q13402 8884266 MGI:104510 RGD:628830 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org/|Mutations of the Myosin VIIa Gene|http://www.retina-international.org/files/sci-news/myomut.htm|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=MYO7A" MYO7A 276903 123653 +HGNC:7607 MYO7B myosin VIIB protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "Myosins, class VII|FERM domain containing" "1102|1293" 1996-04-04 2016-10-05 4648 ENSG00000169994 OTTHUMG00000153419 uc002top.3 XM_291001 CCDS46405 Q6PIF6 "8022818|8884266" MGI:107709 RGD:1561153 MYO7B 606541 +HGNC:7608 MYO9A myosin IXA protein-coding gene gene with protein product Approved 15q23 15q23 "FLJ11061|FLJ13244|MGC71859" Myosins, class IX 1103 1996-04-04 2016-10-05 4649 ENSG00000066933 OTTHUMG00000133440 uc002atl.6 AF117888 NM_006901 CCDS10239 B2RTY4 10409426 MGI:107735 RGD:621395 MYO9A 604875 +HGNC:7609 MYO9B myosin IXB protein-coding gene gene with protein product Approved 19p13.11 19p13.11 CELIAC4 Myosins, class IX 1103 1996-04-04 2015-09-04 4650 ENSG00000099331 OTTHUMG00000182707 uc002nfi.3 NM_004145 CCDS46010 Q13459 9226381 MGI:106624 RGD:3146 MYO9B 602129 +HGNC:7593 MYO10 myosin X protein-coding gene gene with protein product Approved 5p15.1 05p15.1 KIAA0799 "Pleckstrin homology domain containing|Myosins, class X|FERM domain containing" "682|1104|1293" 1996-07-19 2015-09-04 4651 ENSG00000145555 OTTHUMG00000161822 uc003jft.5 AF247457 NM_012334 CCDS54834 Q9HD67 8884266 MGI:107716 RGD:1307193 MYO10 601481 +HGNC:7594 MYO15A myosin XVA protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "DFNB3|MYO15" "Myosins, class XV|FERM domain containing" "1105|1293" 1998-05-29 2015-09-04 51168 ENSG00000091536 OTTHUMG00000059390 uc060cbc.1 AF144094 NM_016239 CCDS42271 Q9UKN7 9603736 MGI:1261811 RGD:1561873 MYO15A 602666 123641 +HGNC:14083 MYO15B myosin XVB protein-coding gene gene with protein product Approved 17q25.1 17q25.1 MYO15BP myosin XVB pseudogene "Myosins, class XV|FERM domain containing" "1105|1293" 2001-06-12 2015-05-12 2015-05-12 80022 ENSG00000266714 OTTHUMG00000179794 uc284ojh.1 NR_003587 Q96JP2 11294886 MGI:2685534 RGD:1597365 MYO15B +HGNC:29822 MYO16 myosin XVI protein-coding gene gene with protein product Approved 13q33.3 13q33.3 "MYR8|KIAA0865|Myo16b|NYAP3|PPP1R107" "neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 3|protein phosphatase 1, regulatory subunit 107" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits|Myosins, class XVI" "403|694|1106" 2007-02-12 2014-11-19 23026 ENSG00000041515 OTTHUMG00000017333 uc001vqt.1 NM_015011 "CCDS32008|CCDS73598" Q9Y6X6 "11588169|17029291|21946561" MGI:2685951 RGD:621561 MYO16 615479 +HGNC:39913 MYO16-AS1 MYO16 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q33.3 13q33.3 MYO16 antisense RNA 1 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100885782 ENSG00000236242 OTTHUMG00000017335 uc031qng.2 NR_047700 +HGNC:39914 MYO16-AS2 MYO16 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q33.3 13q33.3 MYO16 antisense RNA 2 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100874067 ENSG00000229938 OTTHUMG00000017332 uc058yfa.1 +HGNC:31104 MYO18A myosin XVIIIA protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "KIAA0216|MysPDZ" "Myosins, class XVIII|PDZ domain containing" "1107|1220" 2004-02-13 2011-09-27 399687 ENSG00000196535 OTTHUMG00000166360 uc002hdt.2 D86970 NM_078471 "CCDS45641|CCDS45642" Q92614 12761286 MGI:2667185 RGD:1562698 MYO18A 610067 +HGNC:18150 MYO18B myosin XVIIIB protein-coding gene gene with protein product Approved 22q12.1 22q12.1 BK125H2.1 Myosins, class XVIII 1107 2002-04-29 2011-09-27 84700 ENSG00000133454 OTTHUMG00000151129 uc003abz.1 AJ310931 NM_032608 "CCDS54507|CCDS82703" Q8IUG5 "12209013|12547197" MGI:1921626 RGD:1594542 MYO18B 607295 457111 +HGNC:26234 MYO19 myosin XIX protein-coding gene gene with protein product Approved 17q12 17q12 FLJ22865 MYOHD1 myosin head domain containing 1 Myosins, class XIX 1108 2004-02-24 2007-09-26 2007-09-26 2014-08-12 80179 ENSG00000278259 OTTHUMG00000188437 uc032fdu.2 BC008900 NM_025109 "CCDS45654|CCDS54112|CCDS59283" Q96H55 "17877792|19932026" MGI:1913446 RGD:1559961 MYO19 +HGNC:7610 MYOC myocilin protein-coding gene gene with protein product Approved 1q24.3 01q24.3 "TIGR|JOAG1" "trabecular meshwork inducible glucocorticoid response protein|juvenile-onset open-angle glaucoma 1" GLC1A myocilin, trabecular meshwork inducible glucocorticoid response 1997-01-10 2016-03-08 2016-10-05 4653 ENSG00000034971 OTTHUMG00000034789 uc001ghu.4 BC029261 NM_000261 CCDS1297 Q99972 "9169133|9005853" MGI:1202864 RGD:620430 MYOC 601652 123659 +HGNC:16067 MYOCD myocardin protein-coding gene gene with protein product Approved 17p12 17p12 MYCD 2004-03-01 2016-10-05 93649 ENSG00000141052 OTTHUMG00000058767 uc002gnn.4 AF532596 NM_153604 "CCDS11163|CCDS54091" Q8IZQ8 "11439182|12397177" MGI:2137495 RGD:631347 MYOCD 606127 +HGNC:7611 MYOD1 myogenic differentiation 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "PUM|MYOD|bHLHc1" myoblast determination protein 1 MYF3 myogenic factor 3 Basic helix-loop-helix proteins 420 1989-06-30 2005-09-12 2015-07-22 4654 ENSG00000129152 OTTHUMG00000166358 uc001mni.4 AF027148 NM_002478 CCDS7826 P15172 MGI:97275 RGD:631429 MYOD1 159970 459238 +HGNC:3656 MYOF myoferlin protein-coding gene gene with protein product Approved 10q23.33 10q23.33 KIAA1207 fer-1-like family member 3 FER1L3 "fer-1 (C.elegans)-like 3 (myoferlin)|fer-1-like 3, myoferlin (C. elegans)" Ferlin family 828 1999-12-14 2008-11-26 2008-11-26 2016-10-05 26509 ENSG00000138119 OTTHUMG00000018772 uc001kin.4 AB033033 NM_013451 "CCDS41550|CCDS41551" Q9NZM1 "10607832|10995573|17702744" MGI:1919192 RGD:1564216 MYOF 604603 +HGNC:7612 MYOG myogenin protein-coding gene gene with protein product Approved 1q32.1 01q32.1 bHLHc3 myogenic factor 4 MYF4 myogenin (myogenic factor 4) Basic helix-loop-helix proteins 420 1990-11-20 2016-06-03 2016-10-05 4656 ENSG00000122180 OTTHUMG00000042127 uc001gzd.5 BC053899 NM_002479 CCDS1433 P15173 10329008 MGI:97276 RGD:620432 MYOG 159980 +HGNC:7613 MYOM1 myomesin 1 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 skelemin "myomesin 1 (skelemin) (185kD)|myomesin 1 (skelemin) 185kDa|myomesin 1, 185kDa" "Fibronectin type III domain containing|I-set domain containing|Myosin binding proteins" "555|593|658" 1998-12-09 2012-10-17 2016-10-12 8736 ENSG00000101605 OTTHUMG00000178209 uc002klp.3 AF185573 NM_003803 "CCDS45823|CCDS45824" P52179 9806852 MGI:1341430 RGD:631436 LRG_426|http://www.lrg-sequence.org/LRG/LRG_426 MYOM1 603508 +HGNC:7614 MYOM2 myomesin 2 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 "myomesin (M-protein) 2 (165kD)|myomesin (M-protein) 2, 165kDa" "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing|Myosin binding proteins" "555|593|594|658" 1998-12-09 2012-10-17 2014-11-18 9172 ENSG00000036448 OTTHUMG00000129175 uc033azy.2 NM_003970 CCDS5957 P54296 MGI:1328358 RGD:631437 MYOM2 603509 +HGNC:26679 MYOM3 myomesin 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 FLJ35961 myomesin family, member 3 "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing|Myosin binding proteins" "555|593|594|658" 2004-07-06 2012-10-17 2016-10-05 127294 ENSG00000142661 OTTHUMG00000002969 uc001bin.5 AK093280 NM_152372 CCDS41281 Q5VTT5 18177667 MGI:2685280 RGD:1310060 MYOM3 616832 +HGNC:12399 MYOT myotilin protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "TTID|LGMD1A|LGMD1" "titin immunoglobulin domain protein (myotilin)|limb-girdle muscular dystrophy 1A (autosomal dominant)" I-set domain containing 593 1999-04-16 2005-09-07 2005-09-07 2016-10-12 9499 ENSG00000120729 OTTHUMG00000129154 uc003lbv.4 AF133820 NM_006790 "CCDS4194|CCDS47268|CCDS75309" Q9UBF9 "10486214|10369880" MGI:1889800 RGD:1310569 "Myotilin (TTID) sequence variations|http://www.LOVD.nl/MYOT|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=MYOT|LRG_201|http://www.lrg-sequence.org/LRG/LRG_201" MYOT 604103 123664 +HGNC:13752 MYOZ1 myozenin 1 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "FATZ|CS-2" calsarcin-2 MYOZ myozenin 2000-10-23 2002-01-11 2002-01-10 2016-10-05 58529 ENSG00000177791 OTTHUMG00000018466 uc001jur.5 AF240633 NM_021245 CCDS7330 Q9NP98 "11171996|10984498" MGI:1929471 RGD:1561064 MYOZ1 605603 +HGNC:1330 MYOZ2 myozenin 2 protein-coding gene gene with protein product Approved 4q26 04q26 CS-1 C4orf5 chromosome 4 open reading frame 5 2000-05-02 2002-01-11 2002-01-07 2016-10-12 51778 ENSG00000172399 OTTHUMG00000132968 uc003icp.4 AF249873 XM_006714234 CCDS3711 Q9NPC6 "8619474|9110174" MGI:1913063 RGD:1307669 LRG_396|http://www.lrg-sequence.org/LRG/LRG_396 MYOZ2 605602 264425 +HGNC:18565 MYOZ3 myozenin 3 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "CS-3|CS3|FRP3" "calsarcin 3|FATZ related protein 3" 2002-04-26 2016-10-05 91977 ENSG00000164591 OTTHUMG00000130077 uc003lsr.4 AF480443 NM_001122853 CCDS4309 Q8TDC0 11842093 MGI:2179296 RGD:1594778 MYOZ3 610735 +HGNC:7615 MYP1 myopia 1 (X-linked) phenotype phenotype only Approved Xq28 Xq28 Bornholm eye disease myopia 1 (X-linked, Bornholm eye disease included) 1991-07-03 2009-01-12 2009-01-12 4657 15197065 310460 +HGNC:7616 MYP2 myopia 2 (high grade, autosomal dominant) phenotype phenotype only Approved 18p11.31 18p11.31 pathologic myopia 1998-08-11 2006-03-13 4658 "9634508|15723005" 160700 +HGNC:7617 MYP3 myopia 3 (high grade, autosomal dominant) phenotype phenotype only Approved 12q21-q23 12q21-q23 1998-12-15 2009-01-12 8782 "9792869|15592176|18360688" 603221 +HGNC:32549 MYP4 myopia 4 (high grade, autosomal dominant) phenotype phenotype only Approved 7q36 07q36 2009-01-12 2009-01-12 393093 11836361 +HGNC:35433 MYP5 myopia 5 (high grade, autosomal dominant) phenotype phenotype only Approved 17q21-q22 17q21-q22 2009-01-12 2011-02-11 404682 12714612 608474 +HGNC:35435 MYP7 myopia 7 phenotype phenotype only Approved 11p13 11p13 2009-01-12 2011-02-11 553190 15307048 609256 +HGNC:35436 MYP8 myopia 8 phenotype phenotype only Approved 3q26 03q26 2009-01-12 2011-02-11 553192 15307048 609257 +HGNC:35437 MYP9 myopia 9 phenotype phenotype only Approved 4q12 04q12 2009-01-12 2011-02-11 553194 15307048 609258 +HGNC:35438 MYP10 myopia 10 phenotype phenotype only Approved 8p23 08p23 2009-01-12 2011-02-11 553195 15307048 609259 +HGNC:24906 MYP11 myopia 11 (high grade, autosomal dominant) phenotype phenotype only Approved 4q22-q27 04q22-q27 2005-07-25 2014-01-30 594832 16052171 609994 +HGNC:32551 MYP12 myopia 12 (high grade, autosomal dominant) phenotype phenotype only Approved 2q37.1 02q37.1 2006-03-23 2006-03-23 2009-01-12 664780 "15980214|17898262" 609995 +HGNC:32582 MYP13 myopia 13 phenotype phenotype only Approved Xq23-q25 Xq23-q25 2006-03-27 2014-01-30 677764 "16648373|17351708" 300613 +HGNC:35439 MYP14 myopia 14 phenotype phenotype only Approved 1p36 01p36 MYP14 2009-01-12 2009-03-17 2009-03-17 100359407 16501916 610320 +HGNC:35440 MYP15 myopia 15 phenotype phenotype only Approved 10q21.1 10q21.1 2009-01-12 2014-01-30 100294716 17962440 612717 +HGNC:35441 MYP16 myopia 16 phenotype phenotype only Approved 5p15.33-p15.2 05p15.33-p15.2 2009-01-12 2014-01-30 100270641 18421076 612554 +HGNC:37047 MYP17 myopia 17 phenotype phenotype only Approved 7p15 07p15 2009-03-18 2014-01-30 100359401 "18293391|19122830" 608367 +HGNC:37048 MYP18 myopia 18 (high grade, autosomal recessive) phenotype phenotype only Approved 14q22.1-q24.2 14q22.1-q24.2 2009-03-18 2014-01-30 100359406 19204786 255500 +HGNC:23246 MYPN myopalladin protein-coding gene gene with protein product Approved 10q21.3 10q21.3 MYOP sarcomeric protein myopalladin, 145 kDa I-set domain containing 593 2004-02-03 2016-10-12 84665 ENSG00000138347 OTTHUMG00000018344 uc001jnm.6 AL834247 NM_032578 "CCDS7275|CCDS73142" Q86TC9 "11309420|12482578" MGI:1916052 RGD:1308510 LRG_410|http://www.lrg-sequence.org/LRG/LRG_410 MYPN 608517 328840 +HGNC:20178 MYPOP Myb related transcription factor, partner of profilin protein-coding gene gene with protein product Approved 19q13.32 19q13.32 P42pop p42 Myb-related transcription factor, partner of profilin Myb/SANT domain containing 532 2009-02-23 2016-06-22 2016-06-22 339344 ENSG00000176182 OTTHUMG00000182486 uc002pdt.4 BC044311 NM_001012643 CCDS33055 Q86VE0 15615774 MGI:2446472 RGD:1565160 MYPOP +HGNC:1181 MYRF myelin regulatory factor protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "Ndt80|pqn-47|MRF" myelin gene regulatory factor C11orf9 chromosome 11 open reading frame 9 1998-07-30 2012-12-19 2012-12-19 2016-10-05 745 ENSG00000124920 OTTHUMG00000168161 uc001nse.1 NM_013279 "CCDS31579|CCDS44622" Q9Y2G1 "10828591|12384578" MGI:2684944 RGD:1306622 608329 +HGNC:26316 MYRFL myelin regulatory factor-like protein-coding gene gene with protein product Approved 12q15 12q15 "FLJ25056|bcm1377" "C12orf15|C12orf28" "chromosome 12 open reading frame 15|chromosome 12 open reading frame 28" 2006-01-06 2012-12-19 2012-12-19 2014-11-19 196446 ENSG00000166268 OTTHUMG00000169438 uc001svu.2 AK057785 NM_182530 CCDS76577 Q96LU7 MGI:2685085 RGD:1562127 +HGNC:19156 MYRIP myosin VIIA and Rab interacting protein protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "DKFZp586F1018|exophilin-8|MyRIP|SLAC2-C|SLAC2C" "synaptotagmin-like protein homologue lacking C2 domains-c|rab effector MYRIP|Slp homologue lacking C2 domains" A-kinase anchoring proteins 396 2002-09-13 2016-10-05 25924 ENSG00000170011 OTTHUMG00000131392 uc003cka.5 AF396687 NM_015460 "CCDS2689|CCDS68390|CCDS68391|CCDS68392" Q8NFW9 "11964381|12221080" MGI:2384407 RGD:727731 MYRIP 611790 +HGNC:7620 MYSA myasthenic (Lambert-Eaton) syndrome antigen A other unknown Approved reserved reserved 1995-07-06 2013-03-27 4655 8494331 +HGNC:29401 MYSM1 Myb like, SWIRM and MPN domains 1 protein-coding gene gene with protein product Approved 1p32.1 01p32.1 KIAA1915 Myb-like, SWIRM and MPN domains 1 Myb/SANT domain containing 532 2005-07-14 2016-02-23 2016-02-23 114803 ENSG00000162601 OTTHUMG00000009533 uc009wab.3 AB067502 XM_055481 CCDS41343 Q5VVJ2 "11572484|17428495|17707232" MGI:2444584 RGD:1311787 MYSM1 612176 M67.005 +HGNC:7622 MYT1 myelin transcription factor 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "MTF1|MYTI|ZC2HC4A|NZF2|ZC2H2C1" neural zinc finger transcription factor 2 PLPB1 Zinc fingers C2H2C-type 1261 1991-08-08 2016-05-04 4661 ENSG00000196132 OTTHUMG00000149988 uc002yii.3 M96980 NM_004535 CCDS13558 Q01538 "1280325|9268380" MGI:1100535 RGD:1304899 MYT1 600379 +HGNC:7623 MYT1L myelin transcription factor 1 like protein-coding gene gene with protein product Approved 2p25.3 02p25.3 "KIAA1106|NZF1|ZC2HC4B|ZC2H2C2" neural zinc finger transcription factor 1 Zinc fingers C2H2C-type 1261 1996-07-11 2016-01-11 2016-05-04 23040 ENSG00000186487 OTTHUMG00000151407 uc002qxd.4 AF036943 NM_015025 "CCDS46222|CCDS77378" Q9UL68 9373037 MGI:1100511 RGD:620550 MYT1L 613084 +HGNC:49274 MYT1L-AS1 MYT1L antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p25.3 02p25.3 2013-10-15 2013-10-15 730811 ENSG00000225619 OTTHUMG00000151409 NR_024468 +HGNC:7624 MYT2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-07-22 +HGNC:43444 MYZAP myocardial zonula adherens protein protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "MYOZAP|Gup|Gup1|GCOM1" myocardium-enriched zonula adherens protein 2011-11-03 2015-08-26 100820829 ENSG00000263155 OTTHUMG00000132453 uc002aei.4 FJ970029 NM_001018100 P0CAP1 "20093627|21992629|22160502" MGI:2142908 RGD:1359197 614071 +HGNC:30125 MZB1 marginal zone B and B1 cell specific protein protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "PACAP|MGC29506|HSPC190|pERp1|MEDA-7" "plasma cell-induced ER protein 1|proapoptotic caspase adaptor protein|mesenteric oestrogen-dependent adipose gene- 7" marginal zone B and B1 cell-specific protein 2012-09-19 2016-01-27 2016-01-27 51237 ENSG00000170476 OTTHUMG00000163390 uc003lei.4 AF151024 NM_016459 CCDS47273 Q8WU39 "22573353|12573802|11350957|21093319|21688198" MGI:1917066 RGD:1310251 609447 +HGNC:13108 MZF1 myeloid zinc finger 1 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "ZSCAN6|MZF1B|MZF-1|Zfp98" ZNF42 zinc finger protein 42 (myeloid-specific retinoic acid-responsive) Zinc fingers C2H2-type 28 1990-11-05 2006-06-15 2006-06-15 2014-11-19 7593 ENSG00000099326 OTTHUMG00000183550 uc002qtn.4 M58297 NM_198055 "CCDS12988|CCDS59427" P28698 1860835 MGI:107457 RGD:1308391 MZF1 194550 338 +HGNC:51271 MZF1-AS1 MZF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.43 19q13.43 2014-08-22 2014-08-22 100131691 ENSG00000267858 OTTHUMG00000183549 BC024736 NR_027334 +HGNC:33830 MZT1 mitotic spindle organizing protein 1 protein-coding gene gene with protein product Approved 13q21.33 13q21.33 "LOC440145|FLJ21869|MGC150539|RP11-11C5.2|MOZART1" mitotic-spindle organizing protein associated with a ring of gamma-tubulin 1 C13orf37 chromosome 13 open reading frame 37 2008-07-02 2010-07-22 2010-07-22 2016-10-05 440145 ENSG00000204899 OTTHUMG00000017069 uc001viu.3 NM_001071775 CCDS31990 Q08AG7 20360068 MGI:1924039 RGD:1592140 MZT1 613448 +HGNC:50605 MZT1P1 mitotic spindle organizing protein 1 pseudogene 1 pseudogene pseudogene Approved 1p36.22 01p36.22 2014-05-22 2014-05-22 106480302 ENSG00000271264 OTTHUMG00000184268 NG_044274 PGOHUM00000244596 +HGNC:50606 MZT1P2 mitotic spindle organizing protein 1 pseudogene 2 pseudogene pseudogene Approved 7q34 07q34 2014-05-22 2014-05-22 101929581 ENSG00000271404 OTTHUMG00000184423 PGOHUM00000233592 +HGNC:33187 MZT2A mitotic spindle organizing protein 2A protein-coding gene gene with protein product Approved 2q21.1 02q21.1 MOZART2A mitotic-spindle organizing protein associated with a ring of gamma-tubulin 2A FAM128A family with sequence similarity 128, member A 2006-11-22 2010-07-22 2010-07-22 2015-09-04 653784 ENSG00000173272 OTTHUMG00000153606 uc002tsw.5 BC018206 XM_005263741 CCDS42758 Q6P582 20360068 MGI:1922845 RGD:1308126 MZT2A 613449 +HGNC:25886 MZT2B mitotic spindle organizing protein 2B protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "FLJ14346|MOZART2B" mitotic-spindle organizing protein associated with a ring of gamma-tubulin 2B FAM128B family with sequence similarity 128, member B 2006-11-22 2010-07-22 2010-07-22 2015-09-04 80097 ENSG00000152082 OTTHUMG00000131625 uc002tqu.3 BC066296 NM_025029 "CCDS2157|CCDS82511" Q6NZ67 20360068 MZT2B 613450 +HGNC:29850 N4BP1 NEDD4 binding protein 1 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 2008-01-18 2008-01-18 9683 ENSG00000102921 OTTHUMG00000175421 uc002efp.3 AK026937 NM_014664 CCDS45479 O75113 "9734811|11717310" MGI:2136825 RGD:1305179 N4BP1 +HGNC:29851 N4BP2 NEDD4 binding protein 2 protein-coding gene gene with protein product Approved 4p14 04p14 B3BP BCL-3 binding protein 2008-01-18 2015-07-16 55728 ENSG00000078177 OTTHUMG00000128599 uc003guy.5 AB037834 NM_018177 CCDS3457 Q86UW6 "10718198|11717310" MGI:2684414 RGD:1565738 N4BP2 +HGNC:25037 N4BP2L1 NEDD4 binding protein 2 like 1 protein-coding gene gene with protein product Approved 13q13.1 13q13.1 CG018 hypothetical gene CG018 2008-01-18 2016-07-06 2016-07-06 90634 ENSG00000139597 OTTHUMG00000016697 uc001uuc.4 U50527 NM_052818 "CCDS9345|CCDS41877" Q5TBK1 8812419 MGI:2140872 RGD:1595713 N4BP2L1 +HGNC:26916 N4BP2L2 NEDD4 binding protein 2 like 2 protein-coding gene gene with protein product Approved 13q13.1 13q13.1 "CG005|PFAAP5" phosphonoformate immuno-associated protein 5 2008-01-18 2016-07-06 2016-07-06 10443 ENSG00000244754 OTTHUMG00000016700 uc001uuk.5 U50532 NM_014887 "CCDS9346|CCDS45024|CCDS61307" Q92802 8812419 MGI:2687207 RGD:1359603 N4BP2L2 615788 +HGNC:25038 N4BP2L2-IT2 N4BPL2 intronic transcript 2 non-coding RNA RNA, long non-coding Approved 13q13.1 13q13.1 CG030 N4BPL2 intronic transcript 2 (non-protein coding) 2012-09-12 2015-02-25 2015-02-25 116828 ENSG00000281026 OTTHUMG00000189577 uc010tea.2 U50531 NR_026928 8812419 +HGNC:29852 N4BP3 NEDD4 binding protein 3 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 LZTS4 Leucine zipper tumor suppressor family 1314 2010-10-18 2014-11-19 23138 ENSG00000145911 uc003mik.2 AB002339 NM_015111 CCDS34307 O15049 "9205841|11717310" MGI:2442218 RGD:1308356 N4BP3 +HGNC:16021 N6AMT1 N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding gene gene with protein product Approved 21q21.3 21q21.3 "PRED28|N6AMT|MTQ2" "C21orf127|HEMK2" "chromosome 21 open reading frame 127|HemK methyltransferase family member 2" 2003-12-15 2006-12-14 2006-12-14 2014-11-19 29104 ENSG00000156239 OTTHUMG00000078750 uc002ymo.3 AF139682 NM_013240 "CCDS33525|CCDS33526" Q9Y5N5 21193388 MGI:1915018 RGD:1311843 N6AMT1 614553 2.1.1.72 +HGNC:18704 NAA10 N(alpha)-acetyltransferase 10, NatA catalytic subunit protein-coding gene gene with protein product Approved Xq28 Xq28 "DXS707|TE2" "ARD1|ARD1A" "ARD1 homolog, N-acetyltransferase (S. cerevisiae)|ARD1 homolog A, N-acetyltransferase (S. cerevisiae)" "N(alpha)-acetyltransferase subunits|GCN5 related N-acetyltransferases" "660|1134" 2002-05-29 2010-01-14 2010-01-14 2015-09-01 8260 ENSG00000102030 OTTHUMG00000024225 uc004fjm.3 BC000308 NM_003491 "CCDS14737|CCDS59179" P41227 "7981673|19420222|19660095" MGI:1915255 RGD:1565315 NAA10 300013 281695 2.3.1.88 +HGNC:28125 NAA11 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding gene gene with protein product Approved 4q21.23 04q21.23 "ARD2|hARD2" ARD1B ARD1 homolog B (S. cerevisiae) "N(alpha)-acetyltransferase subunits|GCN5 related N-acetyltransferases" "660|1134" 2005-04-08 2010-01-14 2010-01-14 2010-05-07 84779 ENSG00000156269 OTTHUMG00000160913 uc003hlt.5 XM_017008777 CCDS47084 Q9BSU3 "16638120|19660095" MGI:2141314 RGD:1564723 NAA11 2.3.1.88 +HGNC:30782 NAA15 N(alpha)-acetyltransferase 15, NatA auxiliary subunit protein-coding gene gene with protein product Approved 4q31.1 04q31.1 "TBDN100|NATH|FLJ13340" NARG1 NMDA receptor regulated 1 N(alpha)-acetyltransferase subunits 660 2004-12-01 2010-01-14 2010-01-14 2015-04-24 80155 ENSG00000164134 OTTHUMG00000137363 uc003ihu.2 AY039242 NM_057175 CCDS43270 Q9BXJ9 "12140756|19420222|19660095" MGI:1922088 RGD:1310984 NAA15 608000 +HGNC:26164 NAA16 N(alpha)-acetyltransferase 16, NatA auxiliary subunit protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "FLJ22054|MGC40612|PRO2435" NARG1L NMDA receptor regulated 1-like "N(alpha)-acetyltransferase subunits|Tetratricopeptide repeat domain containing" "660|769" 2004-12-01 2010-01-14 2010-01-14 2015-04-24 79612 ENSG00000172766 OTTHUMG00000016791 uc001uyf.2 AL833341 NM_018527 "CCDS9379|CCDS45044" Q6N069 "19480662|19660095" MGI:1914147 RGD:1584324 NAA16 +HGNC:15908 NAA20 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "dJ1002M8.1|NAT3" N-acetyltransferase 3 homolog (S. cerevisiae) NAT5 "N-acetyltransferase 5, ARD1 subunit (arrest-defective 1, S. cerevisiae, homolog)|N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae)|N-acetyltransferase 5|N-acetyltransferase 5 (GCN5-related, putative)" "N(alpha)-acetyltransferase subunits|GCN5 related N-acetyltransferases" "660|1134" 2001-06-21 2010-01-14 2010-01-14 2015-04-24 51126 ENSG00000173418 OTTHUMG00000031998 uc002wrp.4 AF085355 NM_016100 "CCDS13141|CCDS13142|CCDS42854" P61599 "18570629|19660095|22814378" MGI:1915127 RGD:1307713 NAA20 610833 2.3.1.88 +HGNC:25783 NAA25 N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding gene gene with protein product Approved 12q24.13 12q24.13 FLJ13089 C12orf30 chromosome 12 open reading frame 30 N(alpha)-acetyltransferase subunits 660 2006-01-17 2010-01-14 2010-01-14 2015-04-24 80018 ENSG00000111300 OTTHUMG00000169638 uc001ttm.4 AB054990 NM_024953 CCDS9159 Q14CX7 "18570629|19660095|22814378" MGI:2442563 RGD:1305685 NAA25 612755 +HGNC:19844 NAA30 N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding gene gene with protein product Approved 14q22.2 14q22.2 "FLJ35355|MAK3|Mak3p" "C14orf35|NAT12" "chromosome 14 open reading frame 35|N-acetyltransferase 12|N-acetyltransferase 12 (GCN5-related, putative)" "N(alpha)-acetyltransferase subunits|GCN5 related N-acetyltransferases" "660|1134" 2002-11-27 2010-01-14 2010-01-14 2015-04-24 122830 ENSG00000139977 OTTHUMG00000171311 uc001xcx.5 AK092674 NM_001011713 CCDS32088 Q147X3 "19398576|19660095" MGI:1922259 RGD:1559923 NAA30 2.3.1.88 +HGNC:24340 NAA35 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding gene gene with protein product Approved 9q21.33 09q21.33 "FLJ21613|FLJ22643|bA379P1.1" MAK10 MAK10 homolog, amino-acid N-acetyltransferase subunit (S. cerevisiae) N(alpha)-acetyltransferase subunits 660 2004-05-11 2010-01-14 2010-01-14 2016-10-05 60560 ENSG00000135040 OTTHUMG00000020131 uc004aoi.5 AK025266 NM_024635 CCDS6673 Q5VZE5 "19398576|19660095" MGI:1925939 RGD:621771 NAA35 +HGNC:28212 NAA38 N(alpha)-acetyltransferase 38, NatC auxiliary subunit protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MGC14151|PFAAP2" LSMD1 LSM domain containing 1 N(alpha)-acetyltransferase subunits 660 2005-12-15 2014-01-21 2014-01-21 2015-07-22 84316 ENSG00000183011 OTTHUMG00000178023 NM_032356 "CCDS11122|CCDS82059|CCDS82060|CCDS82062" Q9BRA0 "19398576|19660095" MGI:1925554 RGD:1559617 NAA38 +HGNC:25845 NAA40 N(alpha)-acetyltransferase 40, NatD catalytic subunit protein-coding gene gene with protein product Approved 11q13.1 11q13.1 FLJ13848 NAT11 "N-acetyltransferase 11|N-acetyltransferase 11 (GCN5-related, putative)|N(alpha)-acetyltransferase 40, NatD catalytic subunit, homolog (S. cerevisiae)" "N(alpha)-acetyltransferase subunits|GCN5 related N-acetyltransferases" "660|1134" 2006-03-10 2010-01-14 2013-08-28 2015-04-24 79829 ENSG00000110583 OTTHUMG00000167784 uc009yoz.4 AK023910 NM_024771 "CCDS8053|CCDS73311" Q86UY6 "19660095|21935442" MGI:1918249 RGD:1565838 NAA40 +HGNC:29533 NAA50 N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding gene gene with protein product Approved 3q13.31 03q13.31 "FLJ13194|NAT5|San" "MAK3|NAT13" "Mak3 homolog (S. cerevisiae)|N-acetyltransferase 13|N-acetyltransferase 13 (GCN5-related)" "N(alpha)-acetyltransferase subunits|GCN5 related N-acetyltransferases" "660|1134" 2004-05-19 2010-01-14 2010-01-14 2015-04-24 80218 ENSG00000121579 OTTHUMG00000159294 uc003ean.3 AK023256 NM_025146 "CCDS2975|CCDS77791" Q9GZZ1 "16507339|17502424|19660095|19744929" MGI:1919367 RGD:1310944 NAA50 610834 2.3.1.- +HGNC:25875 NAA60 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ14154 NAT15 N-acetyltransferase 15 (GCN5-related, putative) "N(alpha)-acetyltransferase subunits|GCN5 related N-acetyltransferases" "660|1134" 2008-09-24 2011-08-02 2011-08-02 2016-10-12 79903 ENSG00000122390 OTTHUMG00000150268 uc002cvh.5 NM_024845 "CCDS45396|CCDS81937|CCDS81938|CCDS81939|CCDS81940|CCDS81941" Q9H7X0 "21750686|25732826" MGI:1922013 RGD:1308915 LRG_1067|http://www.lrg-sequence.org/LRG/LRG_1067 NAA60 614246 "2.3.1.48|2.3.1.88" +HGNC:736 NAAA N-acylethanolamine acid amidase protein-coding gene gene with protein product Approved 4q21.1 04q21.1 ASAHL N-acylsphingosine amidohydrolase (acid ceramidase)-like 2000-04-13 2008-04-24 2008-04-24 2014-11-19 27163 ENSG00000138744 OTTHUMG00000160855 uc003hjb.4 M92449 XM_017008027 CCDS43239 Q02083 "10610717|1446826" MGI:1914361 RGD:1307267 NAAA 607469 C89.002 objectId:1402 3.5.1.- +HGNC:14526 NAALAD2 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 "NAALADASE2|GCPIII" glutamate carboxypeptidase III 2001-02-28 2016-05-13 10003 ENSG00000077616 OTTHUMG00000166368 uc001pdf.5 AJ012370 NM_005467 "CCDS8288|CCDS73364" Q9Y3Q0 10085079 MGI:1919810 RGD:1305872 NAALAD2 611636 M28.012 objectId:1609 3.4.17.21 +HGNC:23536 NAALADL1 N-acetylated alpha-linked acidic dipeptidase like 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 ileal peptidase I100 2003-11-21 2016-08-09 2016-10-05 10004 ENSG00000168060 OTTHUMG00000165595 uc001ocn.4 AF010141 NM_005468 CCDS31604 Q9UQQ1 10085079 MGI:2685810 RGD:620987 NAALADL1 602640 M28.011 objectId:1608 +HGNC:23219 NAALADL2 N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding gene gene with protein product Approved 3q26.31 03q26.31 glutamate carboxypeptidase II-type non-peptidase homologue 2005-08-17 2016-08-09 2016-10-05 254827 ENSG00000177694 OTTHUMG00000157120 uc003fit.4 NM_207015 CCDS46960 Q58DX5 15168106 MGI:2685867 RGD:1565147 NAALADL2 608806 M28.975 +HGNC:41016 NAALADL2-AS1 NAALADL2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q26.3 03q26.3 NAALADL2 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874245 ENSG00000225552 OTTHUMG00000157121 uc062qbl.1 NR_046714 +HGNC:41015 NAALADL2-AS2 NAALADL2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q26.3 03q26.3 NAALADL2 antisense RNA 2 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874244 ENSG00000226779 OTTHUMG00000157131 uc062qbi.1 NR_046713 +HGNC:41014 NAALADL2-AS3 NAALADL2 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 3q26.3 03q26.3 NAALADL2 antisense RNA 3 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100862679 ENSG00000230292 OTTHUMG00000157080 uc031scg.2 NR_046390 +HGNC:7626 NAB1 NGFI-A binding protein 1 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 EGR1 binding protein 1 NGFI-A binding protein 1 (EGR1 binding protein 1) 1996-10-11 2015-11-13 2016-10-05 4664 ENSG00000138386 OTTHUMG00000132689 uc002usb.4 NM_005966 "CCDS2307|CCDS82545" Q13506 "7624335|8668170|9418898" MGI:107564 RGD:70882 NAB1 600800 +HGNC:7627 NAB2 NGFI-A binding protein 2 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 MADER EGR1 binding protein 2 NGFI-A binding protein 2 (EGR1 binding protein 2) 1996-10-11 2016-03-10 2016-03-10 4665 ENSG00000166886 OTTHUMG00000171192 uc001smz.3 BC065931 NM_005967 "CCDS8930|CCDS81701" Q15742 "8668170|8649813" MGI:107563 RGD:1311712 NAB2 602381 326081 +HGNC:26232 NABP1 nucleic acid binding protein 1 protein-coding gene gene with protein product Approved 2q32.3 02q32.3 "FLJ22833|DKFZp667M1322|FLJ13624|MGC111163|SSB2|hSSB2|SOSS-B2" "single-stranded DNA-binding protein 2|sensor of single-strand DNA complex subunit B2" OBFC2A oligonucleotide/oligosaccharide-binding fold containing 2A 2006-01-17 2012-06-19 2012-06-19 2014-11-19 64859 ENSG00000173559 OTTHUMG00000132720 uc002usx.4 BC017114 NM_022837 "CCDS33352|CCDS58745" Q96AH0 MGI:1923258 RGD:1306658 612103 330748 +HGNC:28412 NABP2 nucleic acid binding protein 2 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "MGC2731|SSB1|hSSB1|SOSS-B1" "single strand DNA-binding protein 1|sensor of single-strand DNA complex subunit B1" OBFC2B oligonucleotide/oligosaccharide-binding fold containing 2B 2006-01-17 2012-06-19 2012-06-19 2014-11-19 79035 ENSG00000139579 OTTHUMG00000152527 uc001ski.4 BC006171 NM_024068 CCDS8911 Q9BQ15 MGI:1917167 RGD:1308158 612104 +HGNC:7629 NACA nascent polypeptide-associated complex alpha subunit protein-coding gene gene with protein product Approved 12q23-q24.1 12q23-q24.1 NACA1 nascent-polypeptide-associated complex alpha polypeptide 1995-05-18 2007-04-20 2016-04-25 4666 ENSG00000196531 OTTHUMG00000170033 uc001smc.3 X80909 NM_005594 "CCDS31837|CCDS44925" "E9PAV3|Q13765" 8047162 MGI:106095 RGD:1308642 NACA 601234 +HGNC:23290 NACA2 nascent polypeptide associated complex alpha subunit 2 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 MGC71999 alpha-NAC protein NACAL "nascent-polypeptide-associated complex alpha polypeptide-like|nascent polypeptide-associated complex alpha subunit 2" 2005-04-07 2007-04-20 2016-04-01 2016-04-01 342538 ENSG00000253506 OTTHUMG00000132321 uc002izj.3 BC062710 NM_199290 CCDS11630 Q9H009 12406326 NACA2 609274 +HGNC:33442 NACA3P NACA family member 3 pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 NACA3 2007-04-20 2013-12-20 389240 ENSG00000121089 OTTHUMG00000161263 NG_005843 NACA3P PGOHUM00000250798 +HGNC:22196 NACAD NAC alpha domain containing protein-coding gene gene with protein product Approved 7p13 07p13 KIAA0363 2007-04-20 2015-08-26 23148 ENSG00000136274 OTTHUMG00000159170 uc003tmt.4 AB002361 NM_001146334 CCDS47582 O15069 MGI:3603030 RGD:1559824 NACAD +HGNC:24688 NACAP1 nascent polypeptide associated complex alpha subunit pseudogene 1 pseudogene pseudogene Approved 8q22.3 08q22.3 FKSG17 nascent-polypeptide-associated complex alpha polypeptide pseudogene 1 2005-09-02 2015-11-18 2015-11-18 83955 ENSG00000228224 OTTHUMG00000164829 AF315951 NR_002182 Q9BZK3 +HGNC:49489 NACAP2 nascent polypeptide associated complex alpha subunit pseudogene 2 pseudogene pseudogene Approved 10q26.12 10q26.12 nascent-polypeptide-associated complex alpha polypeptide pseudogene 2 2013-12-20 2015-11-18 2015-11-18 651144 ENSG00000180230 OTTHUMG00000019162 NG_005845 PGOHUM00000238640 +HGNC:49490 NACAP3 nascent polypeptide associated complex alpha subunit pseudogene 3 pseudogene pseudogene Approved 12q22 12q22 nascent-polypeptide-associated complex alpha polypeptide pseudogene 3 2013-12-20 2015-11-18 2015-11-18 101928685 ENSG00000257210 OTTHUMG00000170114 PGOHUM00000239545 +HGNC:49491 NACAP4 nascent polypeptide associated complex alpha subunit pseudogene 4 pseudogene pseudogene Approved 2p24.3 02p24.3 nascent-polypeptide-associated complex alpha polypeptide pseudogene 4 2013-12-20 2015-11-18 2015-11-18 100421926 NG_023678 PGOHUM00000261350 +HGNC:49492 NACAP5 nascent polypeptide associated complex alpha subunit pseudogene 5 pseudogene pseudogene Approved 4p15.32 04p15.32 nascent-polypeptide-associated complex alpha polypeptide pseudogene 5 2013-12-20 2015-11-18 2015-11-18 645108 ENSG00000249488 OTTHUMG00000160274 NG_022007 PGOHUM00000245476 +HGNC:49493 NACAP6 nascent polypeptide associated complex alpha subunit pseudogene 6 pseudogene pseudogene Approved 5p15.1 05p15.1 nascent-polypeptide-associated complex alpha polypeptide pseudogene 6 2013-12-20 2015-11-18 2015-11-18 100132778 ENSG00000248403 OTTHUMG00000161790 NG_021840 PGOHUM00000235130 +HGNC:49494 NACAP7 nascent polypeptide associated complex alpha subunit pseudogene 7 pseudogene pseudogene Approved 6q15 06q15 nascent-polypeptide-associated complex alpha polypeptide pseudogene 7 2013-12-20 2015-11-18 2015-11-18 101059973 ENSG00000218965 OTTHUMG00000015201 NG_046716 PGOHUM00000261424 +HGNC:20967 NACC1 nucleus accumbens associated 1 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "NAC1|NAC-1|BEND8|BTBD30" "nucleus accumbens associated 1|BEN domain containing 8" BTBD14B "BTB (POZ) domain containing 14B|nucleus accumbens associated 1, BEN and BTB (POZ) domain containing" "BEN domain containing|BTB domain containing" "422|861" 2003-12-15 2008-10-03 2016-02-12 2016-02-12 112939 ENSG00000160877 OTTHUMG00000180748 uc002mwm.5 AF395817 NM_052876 CCDS12294 Q96RE7 12477932 MGI:1914080 RGD:621003 NACC1 610672 +HGNC:23846 NACC2 NACC family member 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "MGC23427|BEND9|BTBD31" BEN domain containing 9 BTBD14A "BTB (POZ) domain containing 14A|NACC family member 2, BEN and BTB (POZ) domain containing" "BEN domain containing|BTB domain containing" "422|861" 2003-12-15 2008-10-03 2016-02-12 2016-02-12 138151 ENSG00000148411 OTTHUMG00000020921 uc004cgv.4 BC015649 NM_144653 CCDS6993 Q96BF6 12477932 MGI:1915241 RGD:1309292 NACC2 615786 +HGNC:29831 NADK NAD kinase protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ13052 2005-04-26 2014-11-19 65220 ENSG00000008130 OTTHUMG00000000942 uc001aid.5 BC001709 NM_023018 "CCDS30565|CCDS55561|CCDS55562" O95544 11594753 MGI:2183149 RGD:1642420 NADK 611616 2.7.1.23 +HGNC:26404 NADK2 NAD kinase 2, mitochondrial protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "FLJ30596|MNADK" mitochondrial NAD kinase "C5orf33|NADKD1" "chromosome 5 open reading frame 33|NAD kinase domain containing 1" 2006-08-25 2013-04-30 2013-04-30 2016-01-27 133686 ENSG00000152620 OTTHUMG00000131105 BC062567 NM_153013 "CCDS3917|CCDS47197|CCDS75235" Q4G0N4 23616928 MGI:1915896 RGD:1306809 615787 434216 2.7.1.23 +HGNC:41143 NADK2-AS1 NADK2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p13.2 05p13.2 NADKD1-AS1 NADKD1 antisense RNA 1 2012-10-01 2013-04-30 2013-04-30 2014-11-19 101056700 ENSG00000245711 OTTHUMG00000162149 BC033402 +HGNC:29832 NADSYN1 NAD synthetase 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 FLJ10631 2005-09-09 2015-07-22 55191 ENSG00000172890 OTTHUMG00000167375 uc001oqn.4 AB091316 NM_018161 CCDS8201 Q6IA69 12547821 MGI:1926164 RGD:727801 NADSYN1 608285 +HGNC:621 NAE1 NEDD8 activating enzyme E1 subunit 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 ula-1 APPBP1 amyloid beta precursor protein binding protein 1, 59kDa Ubiquitin like modifier activating enzymes 100 1999-01-13 2007-12-11 2007-12-11 2016-10-05 8883 ENSG00000159593 OTTHUMG00000137513 uc002eqf.4 U50939 NM_003905 "CCDS10820|CCDS42171|CCDS42172|CCDS67050" Q13564 "8626687|12740388" MGI:2384561 RGD:619945 NAE1 603385 +HGNC:25126 NAF1 nuclear assembly factor 1 ribonucleoprotein protein-coding gene gene with protein product Approved 4q32.2 04q32.2 nuclear assembly factor 1 homolog (S. cerevisiae) 2008-02-26 2013-03-05 2014-11-19 92345 ENSG00000145414 OTTHUMG00000161370 uc003iqj.4 NM_138386 "CCDS3803|CCDS47159" Q96HR8 "16618814|16601202" MGI:2682306 RGD:1306802 NAF1 +HGNC:7631 NAGA alpha-N-acetylgalactosaminidase protein-coding gene gene with protein product Approved 22q13.2 22q13.2 D22S674 N-acetylgalactosaminidase, alpha- 1986-01-01 2016-05-12 2016-05-12 4668 ENSG00000198951 OTTHUMG00000151276 uc003bbw.5 XM_005261615 CCDS14030 P17050 MGI:1261422 RGD:1306025 NAGA 104170 123669 3.2.1.49 +HGNC:17174 NAGK N-acetylglucosamine kinase protein-coding gene gene with protein product Approved 2p13.3 02p13.3 GNK 2001-11-16 2016-04-25 55577 ENSG00000124357 OTTHUMG00000153239 uc061kll.1 AJ242910 XM_005264412 "CCDS33220|CCDS82466" Q9UJ70 10824116 MGI:1860418 RGD:1305057 NAGK 606828 2.7.1.59 +HGNC:7632 NAGLU N-acetyl-alpha-glucosaminidase protein-coding gene gene with protein product Approved 17q21.2 17q21.2 NAG Sanfilippo disease IIIB N-acetylglucosaminidase, alpha 1995-09-15 2016-04-01 2016-04-01 4669 ENSG00000108784 OTTHUMG00000180240 uc002hzv.4 NM_000263 CCDS11427 P54802 MGI:1351641 RGD:1564228 NAGLU 609701 123672 3.2.1.50 +HGNC:17378 NAGPA N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "APAA|UCE" 2003-04-03 2014-11-19 51172 ENSG00000103174 OTTHUMG00000090515 uc002cyg.4 AF187072 NM_016256 CCDS10527 Q9UK23 "10551838|12058031" MGI:1351598 RGD:1308972 NAGPA 607985 3.1.4.45 +HGNC:44184 NAGPA-AS1 NAGPA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 NAGPA antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100507589 AK055222 NR_038913 +HGNC:17996 NAGS N-acetylglutamate synthase protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "AGAS|ARGA|NAT7" GCN5 related N-acetyltransferases 1134 2004-12-03 2014-11-19 162417 ENSG00000161653 OTTHUMG00000181802 uc002ies.4 AY116537 NM_153006 CCDS11473 Q8N159 "15050968|12459178" MGI:2387600 RGD:1565783 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=NAGS NAGS 608300 123675 +HGNC:25446 NAIF1 nuclear apoptosis inducing factor 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "DKFZp762G199|bA379C10.2" nuclear apoptosis-inducing factor 1 C9orf90 chromosome 9 open reading frame 90 2004-02-19 2008-04-10 2008-04-10 2015-08-25 203245 ENSG00000171169 OTTHUMG00000020727 uc004bta.4 AK122729 NM_197956 CCDS6889 Q69YI7 "14702039|16378748" MGI:1918504 RGD:1597546 NAIF1 610673 +HGNC:7634 NAIP NLR family apoptosis inhibitory protein protein-coding gene gene with protein product Approved 5q13.2 05q13.2 NLRB1 "nucleotide-binding oligomerization domain, leucine rich repeat and BIR domain containing 1|NLR family, BIR domain containing 1" BIRC1 baculoviral IAP repeat-containing 1 "Baculoviral IAP repeat containing|NLR family" "419|666" 1998-05-14 2006-12-08 2016-06-01 2016-06-01 4671 ENSG00000249437 OTTHUMG00000163318 uc003kar.2 U19251 NM_004536 "CCDS4009|CCDS43327" Q13075 7813013 "MGI:1298220|MGI:1298222|MGI:1298223|MGI:1298226" RGD:621281 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ NAIP 600355 123680 I32.001 objectId:2793 +HGNC:19082 NALCN sodium leak channel, non-selective protein-coding gene gene with protein product Approved 13q32.3-q33.1 13q32.3-q33.1 "bA430M15.1|CanIon" VGCNL1 voltage gated channel like 1 Sodium leak channels, non selective 283 2002-08-09 2007-04-26 2016-02-05 2016-10-11 259232 ENSG00000102452 OTTHUMG00000017295 uc001vox.2 AY141972 NM_052867 CCDS9498 Q8IZF0 17448995 MGI:2444306 RGD:628710 NALCN 611549 376877 objectId:750 +HGNC:42743 NALCN-AS1 NALCN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 NALCN antisense RNA 1 (non-protein coding) 2011-08-18 2012-08-15 2016-10-05 100885778 ENSG00000233009 OTTHUMG00000017294 uc031qnb.1 NR_047687 +HGNC:51192 NALT1 NOTCH1 associated lncRNA in T-cell acute lymphoblastic leukemia 1 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 TCONS_l2_00029132 "MIR4674HG|LINC01573" "MIR4674 host gene (non-protein coding)|long intergenic non-protein coding RNA 1573|NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1" Long non-coding RNAs 788 2014-08-01 2015-09-18 2015-11-13 2015-11-13 101928483 ENSG00000237886 OTTHUMG00000020933 NR_121577 26330272 +HGNC:42408 NAMA non-protein coding RNA, associated with MAP kinase pathway and growth arrest non-coding RNA RNA, long non-coding Approved 9q22.33 09q22.33 Long non-coding RNAs 788 2011-08-02 2014-11-18 100996569 ENSG00000271086 uc004azm.3 DQ673922 NR_102270 17415708 +HGNC:30092 NAMPT nicotinamide phosphoribosyltransferase protein-coding gene gene with protein product Approved 7q22.3 07q22.3 PBEF visfatin PBEF1 pre-B-cell colony enhancing factor 1 2004-02-02 2008-03-27 2008-03-27 2014-11-19 10135 ENSG00000105835 OTTHUMG00000140388 uc003vdq.4 U02020 NM_182790 CCDS5737 P43490 8289818 MGI:1929865 RGD:631365 NAMPT 608764 +HGNC:17633 NAMPTP1 nicotinamide phosphoribosyltransferase pseudogene 1 pseudogene pseudogene Approved 10p11.21 10p11.21 bA92J19.4 "PBEF2|NAMPTL" "pre-B-cell colony enhancing factor 2|nicotinamide phosphoribosyltransferase-like" 2004-05-27 2014-10-01 2014-10-01 2014-10-01 646309 ENSG00000229644 OTTHUMG00000017964 NG_005593 8289818 +HGNC:51314 NAMPTP2 nicotinamide phosphoribosyltransferase pseudogene 2 pseudogene pseudogene Approved 5q31.3 05q31.3 2014-10-01 2014-10-01 100132712 ENSG00000249229 OTTHUMG00000163347 NG_021864 +HGNC:51313 NAMPTP3 nicotinamide phosphoribosyltransferase pseudogene 3 pseudogene pseudogene Approved 16p11.2 16p11.2 2014-10-01 2014-10-01 2014-10-01 2014-10-01 106480319 ENSG00000261053 OTTHUMG00000176226 NG_044420 PGOHUM00000293828 +HGNC:20857 NANOG Nanog homeobox protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "FLJ12581|FLJ40451" NKL subclass homeoboxes and pseudogenes 519 2003-09-10 2014-11-19 79923 ENSG00000111704 OTTHUMG00000166019 uc009zfy.2 AB093576 NM_024865 "CCDS31736|CCDS73436" Q9H9S0 "12787505|12787504" MGI:1919200 RGD:1303178 NANOG 607937 8536 +HGNC:24958 NANOGNB NANOG neighbor homeobox protein-coding gene gene with protein product Approved 12p13.31 12p13.31 homeobox C14 2010-06-25 2010-07-08 2015-04-07 360030 ENSG00000205857 OTTHUMG00000165107 uc009zfx.2 NM_001145465 CCDS44826 Q7Z5D8 21679462 NANOGNB 9099 +HGNC:42158 NANOGNBP1 NANOGNB pseudogene 1 pseudogene pseudogene Approved 2q11.2 02q11.2 2011-06-02 2012-03-15 100859926 ENSG00000226034 OTTHUMG00000153162 NG_031948 PGOHUM00000240818 +HGNC:42159 NANOGNBP2 NANOGNB pseudogene 2 pseudogene pseudogene Approved 12q24.33 12q24.33 2011-06-02 2011-06-02 101060006 ENSG00000256563 OTTHUMG00000167935 NG_046626 PGOHUM00000239619 +HGNC:42160 NANOGNBP3 NANOGNB pseudogene 3 pseudogene pseudogene Approved Xq22.1 Xq22.1 2011-06-02 2012-06-20 100652831 ENSG00000270813 OTTHUMG00000185071 NG_032794 PGOHUM00000241468 +HGNC:23099 NANOGP1 Nanog homeobox pseudogene 1 pseudogene pseudogene Approved 12p13.31 12p13.31 NANOG2 NKL subclass homeoboxes and pseudogenes 519 2004-11-17 2015-01-20 404635 ENSG00000176654 OTTHUMG00000187943 AY455283 NG_006522 Q8N7R0 "15108323|15233988" NANOGP1 8415 PGOHUM00000291524 +HGNC:23100 NANOGP2 Nanog homeobox pseudogene 2 pseudogene pseudogene Approved 2q36.1 02q36.1 NANOGP4 NKL subclass homeoboxes and pseudogenes 519 2004-11-17 2016-08-01 414131 ENSG00000228670 OTTHUMG00000153388 NG_004099 "15108323|15233988" 8384 PGOHUM00000298328 +HGNC:23101 NANOGP3 Nanog homeobox pseudogene 3 pseudogene pseudogene Approved 6p12.1 06p12.1 NKL subclass homeoboxes and pseudogenes 519 2003-10-07 2016-08-15 340217 ENSG00000271373 OTTHUMG00000184573 NG_004095 8385 PGOHUM00000301389 +HGNC:23102 NANOGP4 Nanog homeobox pseudogene 4 pseudogene pseudogene Approved 7p14.3 07p14.3 NANOGP2 NKL subclass homeoboxes and pseudogenes 519 2004-11-17 2016-08-15 414132 ENSG00000237065 OTTHUMG00000152732 AY455277 NG_004100 "15108323|15233988" 8386 PGOHUM00000306605 +HGNC:23103 NANOGP5 Nanog homeobox pseudogene 5 pseudogene pseudogene Approved 9q31.1 09q31.1 NKL subclass homeoboxes and pseudogenes 519 2004-11-17 2016-08-15 414133 ENSG00000231697 OTTHUMG00000020362 NG_004101 15233988 8387 PGOHUM00000304419 +HGNC:23104 NANOGP6 Nanog homeobox pseudogene 6 pseudogene pseudogene Approved 10q24.2 10q24.2 NKL subclass homeoboxes and pseudogenes 519 2006-06-29 2016-08-15 414134 ENSG00000227351 OTTHUMG00000018891 NG_004102 15233988 8388 PGOHUM00000289975 +HGNC:23105 NANOGP7 Nanog homeobox pseudogene 7 pseudogene pseudogene Approved 14q32.12 14q32.12 NANOGP3 NKL subclass homeoboxes and pseudogenes 519 2004-11-17 2016-08-15 414130 ENSG00000258774 OTTHUMG00000171119 AY455278 NG_004098 "15108323|15233988" 8389 PGOHUM00000292436 +HGNC:23106 NANOGP8 Nanog homeobox pseudogene 8 other unknown Approved 15q14 15q14 NKL subclass homeoboxes and pseudogenes 519 2003-10-07 2016-07-19 388112 ENSG00000255192 OTTHUMG00000166041 uc032bzh.2 NG_004093 Q6NSW7 8390 +HGNC:23107 NANOGP9 Nanog homeobox pseudogene 9 pseudogene pseudogene Approved Xq12 Xq12 NKL subclass homeoboxes and pseudogenes 519 2003-10-07 2016-08-15 349386 ENSG00000231809 OTTHUMG00000021724 NG_004097 8391 PGOHUM00000304671 +HGNC:23108 NANOGP10 Nanog homeobox pseudogene 10 pseudogene pseudogene Approved Xp11.3 Xp11.3 NKL subclass homeoboxes and pseudogenes 519 2003-10-07 2016-08-15 349372 ENSG00000231750 OTTHUMG00000021386 NG_004096 8392 PGOHUM00000304572 +HGNC:32941 NANOGP11 Nanog homeobox pseudogene 11 pseudogene pseudogene Approved 6q25 06q25 NKL subclass homeoboxes and pseudogenes 519 2006-06-29 2011-06-20 414135 ENSG00000233464 OTTHUMG00000015847 uc063siz.1 NG_004103 15233988 8393 +HGNC:23044 NANOS1 nanos C2HC-type zinc finger 1 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 "NOS1|ZC2HC12A" nanos homolog 1 (Drosophila) Zinc fingers C2HC-type 66 2003-12-01 2016-06-01 2016-10-05 340719 ENSG00000188613 OTTHUMG00000019141 uc009xzf.2 AF275269 NM_199461 CCDS7607 Q8WY41 12690449 MGI:2669254 RGD:1308194 NANOS1 608226 356158 +HGNC:23292 NANOS2 nanos C2HC-type zinc finger 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "NOS2|ZC2HC12B" nanos homolog 2 (Drosophila) Zinc fingers C2HC-type 66 2003-12-01 2016-06-01 2016-06-01 339345 ENSG00000188425 OTTHUMG00000182487 uc002pdu.4 BC042883 NM_001029861 CCDS33056 P60321 "12947200|12690449" MGI:2676627 RGD:1562436 NANOS2 608228 +HGNC:22048 NANOS3 nanos C2HC-type zinc finger 3 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "NANOS1L|NOS3|ZC2HC12C" nanos homolog 3 (Drosophila) Zinc fingers C2HC-type 66 2003-12-01 2016-06-01 2016-06-01 342977 ENSG00000187556 OTTHUMG00000181850 uc002mxj.5 BM702754 XM_292819 CCDS42511 P60323 MGI:2675387 RGD:1306672 NANOS3 608229 +HGNC:16140 NANP N-acetylneuraminic acid phosphatase protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "dJ694B14.3|MGC26833" "C20orf147|HDHD4" "chromosome 20 open reading frame 147|haloacid dehalogenase-like hydrolase domain containing 4" HAD Asp-based non-protein phosphatases 1045 2001-07-17 2006-01-24 2006-01-24 2016-10-05 140838 ENSG00000170191 OTTHUMG00000032132 uc002wuy.5 AL031673 NM_152667 CCDS13173 Q8TBE9 16237198 MGI:1914561 RGD:1306009 NANP 610763 3.1.3.29 +HGNC:19237 NANS N-acetylneuraminate synthase protein-coding gene gene with protein product Approved 9q22.33 09q22.33 SAS sialic acid synthase N-acetylneuraminic acid synthase 2002-12-16 2015-11-27 2016-06-28 54187 ENSG00000095380 OTTHUMG00000020341 uc004ayc.4 AF161387 NM_018946 CCDS6733 Q9NR45 "10749855|27213289" MGI:2149820 RGD:1311943 NANS 605202 459340 +HGNC:7637 NAP1L1 nucleosome assembly protein 1 like 1 protein-coding gene gene with protein product Approved 12q21.1 12q21.1 "NRP|NAP1|NAP1L|MGC8688|MGC23410" nucleosome assembly protein 1-like 1 1996-09-03 2016-03-10 2016-03-10 4673 ENSG00000187109 OTTHUMG00000169786 uc001sxx.3 NM_139207 "CCDS9013|CCDS76581|CCDS81715" P55209 8297347 MGI:1855693 RGD:71094 NAP1L1 164060 +HGNC:38004 NAP1L1P1 nucleosome assembly protein 1 like 1 pseudogene 1 pseudogene pseudogene Approved 11q24.2 11q24.2 nucleosome assembly protein 1-like 1 pseudogene 1 2010-03-17 2016-03-10 2016-03-10 729561 ENSG00000254759 OTTHUMG00000165873 NG_021838 PGOHUM00000261126 +HGNC:38005 NAP1L1P2 nucleosome assembly protein 1 like 1 pseudogene 2 pseudogene pseudogene Approved Yp11.2 Yp11.2 nucleosome assembly protein 1-like 1 pseudogene 2 2010-03-17 2016-03-10 2016-10-05 100128894 ENSG00000229163 OTTHUMG00000036154 NG_021905 PGOHUM00000261822 +HGNC:38007 NAP1L1P3 nucleosome assembly protein 1 like 1 pseudogene 3 pseudogene pseudogene Approved 3q13.33 03q13.33 nucleosome assembly protein 1-like 1 pseudogene 3 2010-03-18 2016-03-10 2016-03-10 100130335 ENSG00000213371 OTTHUMG00000159666 NG_022267 PGOHUM00000238149 +HGNC:7638 NAP1L2 nucleosome assembly protein 1 like 2 protein-coding gene gene with protein product Approved Xq13.2 Xq13.2 "BPX|MGC26243" nucleosome assembly protein 1-like 2 1996-09-03 2016-03-10 2016-10-05 4674 ENSG00000186462 OTTHUMG00000021827 uc004ebi.4 AF136178 NM_021963 CCDS14423 Q9ULW6 8789438 MGI:106654 RGD:1563260 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NAP1L2 NAP1L2 300026 +HGNC:7639 NAP1L3 nucleosome assembly protein 1 like 3 protein-coding gene gene with protein product Approved Xq21.32 Xq21.32 "MB20|NPL3|MGC26312" nucleosome assembly protein 1-like 3 1996-09-03 2016-03-10 2016-10-05 4675 ENSG00000186310 OTTHUMG00000021974 uc004efq.4 NM_004538 CCDS14465 Q99457 8976385 MGI:1859565 RGD:620990 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NAP1L3 NAP1L3 300117 +HGNC:7640 NAP1L4 nucleosome assembly protein 1 like 4 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 NAP2 nucleosome assembly protein 1-like 4 1997-06-09 2016-03-10 2016-10-05 4676 ENSG00000205531 OTTHUMG00000011009 uc001lxc.4 "AA573896|BC022090|U77456" NM_005969 CCDS41599 Q99733 8923002 MGI:1316687 RGD:1305391 NAP1L4 601651 +HGNC:39740 NAP1L4P1 nucleosome assembly protein 1 like 4 pseudogene 1 pseudogene pseudogene Approved 1p13.1 01p13.1 nucleosome assembly protein 1-like 4 pseudogene 1 2011-03-24 2016-03-10 2016-03-10 728589 ENSG00000177173 OTTHUMG00000022753 NG_006955 PGOHUM00000244155 +HGNC:39739 NAP1L4P2 nucleosome assembly protein 1 like 4 pseudogene 2 pseudogene pseudogene Approved Xq22.3 Xq22.3 nucleosome assembly protein 1-like 4 pseudogene 2 2011-03-24 2016-03-10 2016-03-10 100874319 ENSG00000224816 OTTHUMG00000022148 NG_032355 PGOHUM00000241492 +HGNC:39738 NAP1L4P3 nucleosome assembly protein 1 like 4 pseudogene 3 pseudogene pseudogene Approved 13q14.2 13q14.2 nucleosome assembly protein 1-like 4 pseudogene 3 2011-03-24 2016-03-10 2016-03-10 730174 ENSG00000234145 OTTHUMG00000016883 NG_021968 +HGNC:19968 NAP1L5 nucleosome assembly protein 1 like 5 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 DRLM nucleosome assembly protein 1-like 5 2004-02-04 2016-03-10 2016-10-12 266812 ENSG00000177432 OTTHUMG00000130950 uc003hrx.4 NM_153757 NM_153757 CCDS3632 Q96NT1 12383514 MGI:1923555 RGD:1584123 LRG_1072|http://www.lrg-sequence.org/LRG/LRG_1072 NAP1L5 612203 +HGNC:31706 NAP1L6 nucleosome assembly protein 1 like 6 other unknown Approved Xq13.2 Xq13.2 FLJ33596 nucleosome assembly protein 1-like 6 2006-07-04 2016-03-10 2016-03-10 645996 ENSG00000204118 OTTHUMG00000021826 uc004ebh.2 AK090915 NR_027291 A6NFF2 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NAP1L6 NAP1L6 +HGNC:7641 NAPA NSF attachment protein alpha protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "alpha SNAP|alpha soluble NSF attachment protein" N-ethylmaleimide-sensitive factor attachment protein, alpha 1998-12-17 2015-12-16 2015-12-16 8775 ENSG00000105402 OTTHUMG00000183294 uc002pha.3 U39412 NM_003827 CCDS12702 P54920 9269766 MGI:104563 RGD:620855 NAPA 603215 +HGNC:44118 NAPA-AS1 NAPA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.32-q13.33 19q13.32-q13.33 NAPA antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100505681 ENSG00000268061 OTTHUMG00000183420 uc021uwo.2 AK057858 NR_038452 +HGNC:15751 NAPB NSF attachment protein beta protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "SNAP-BETA|SNAPB" beta soluble NSF attachment protein N-ethylmaleimide-sensitive factor attachment protein, beta 2001-05-30 2015-12-16 2016-10-05 63908 ENSG00000125814 OTTHUMG00000032062 uc002wta.4 AK022817 NM_022080 "CCDS13152|CCDS63241|CCDS63242|CCDS74710" Q9H115 8455721 MGI:104562 RGD:1589649 NAPB 611270 +HGNC:21683 NAPEPLD N-acyl phosphatidylethanolamine phospholipase D protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "FMP30|C7orf18|NAPE-PLD" chromosome 7 open reading frame 18, N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D 2008-01-10 2014-11-19 222236 ENSG00000161048 OTTHUMG00000157204 uc003vbc.3 "BC037350|AY357337" NM_198990 CCDS5729 Q6IQ20 "14634025|15820312|18067139" MGI:2140885 RGD:735197 NAPEPLD 612334 objectId:1398 3.1.4.54 +HGNC:7642 NAPG NSF attachment protein gamma protein-coding gene gene with protein product Approved 18p11.22 18p11.22 gamma SNAP N-ethylmaleimide-sensitive factor attachment protein, gamma 1998-12-17 2016-02-01 2016-10-05 8774 ENSG00000134265 OTTHUMG00000179119 uc002kon.4 U78107 NM_003826 CCDS45827 Q99747 9269766 MGI:104561 RGD:1310109 NAPG 603216 +HGNC:45165 NAPGP1 N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene 1 pseudogene pseudogene Approved 10q23.31 10q23.31 2013-02-28 2016-08-16 100288843 ENSG00000271408 OTTHUMG00000184643 NG_022185 PGOHUM00000290239 +HGNC:45166 NAPGP2 N-ethylmaleimide-sensitive factor attachment protein, gamma pseudogene 2 pseudogene pseudogene Approved 6p21.33 06p21.33 2013-02-28 2013-02-28 100422429 NG_025807 PGOHUM00000260122 +HGNC:30450 NAPRT nicotinate phosphoribosyltransferase protein-coding gene gene with protein product Approved 8q24.3 08q24.3 PP3856 NAPRT1 nicotinate phosphoribosyltransferase domain containing 1 2005-08-11 2014-06-26 2014-06-26 2014-11-18 93100 ENSG00000147813 OTTHUMG00000156942 AF258565 NM_145201 "CCDS6403|CCDS69555" Q6XQN6 "17604275|21742010" MGI:2442664 RGD:1302945 611552 6.3.4.21 +HGNC:13395 NAPSA napsin A aspartic peptidase protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "NAP1|NAPA|Kdap|KAP" kidney-derived aspartic protease-like protein 2004-06-09 2014-11-19 9476 ENSG00000131400 OTTHUMG00000183035 uc002prx.4 AF090386 NM_004851 CCDS12794 O96009 MGI:109365 RGD:61940 NAPSA 605631 A01.046 +HGNC:13396 NAPSB napsin B aspartic peptidase, pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 "NAP1L|NAP2|NAPB|NAPSBP" 2004-06-09 2012-08-22 2014-11-19 256236 ENSG00000131401 OTTHUMG00000166192 AF090387 XR_000169 "9877162|10591213" NAPSB PGOHUM00000263659 A01.P01 +HGNC:29916 NARF nuclear prelamin A recognition factor protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FLJ10067|DKFZp434G0420|IOP2" iron-only hydrogenase-like protein 2 2005-11-22 2014-11-19 26502 ENSG00000141562 OTTHUMG00000178844 uc002kfg.5 BC000438 NM_031968 "CCDS32777|CCDS42403|CCDS42404" Q9UHQ1 "10514485|15667261" MGI:1914858 RGD:1310894 NARF 605349 +HGNC:43651 NARF-IT1 NARF intronic transcript 1 non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 NARF-OT1 "NARF overlapping transcript 1 (non-protein coding)|NARF intronic transcript 1 (non-protein coding)" 2011-12-19 2013-02-20 2015-02-25 2015-02-25 100506001 ENSG00000266236 OTTHUMG00000178846 uc060mci.1 +HGNC:14179 NARFL nuclear prelamin A recognition factor like protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ21988|PRN|HPRN|IOP1|NAR1" iron-only hydrogenase-like protein 1 nuclear prelamin A recognition factor-like 2000-12-21 2016-03-21 2016-06-07 64428 ENSG00000103245 OTTHUMG00000122093 uc002cjr.4 AY129231 NM_022493 "CCDS10425|CCDS76798" Q9H6Q4 16956324 MGI:1914813 RGD:1305982 NARFL 611118 +HGNC:7643 NARS asparaginyl-tRNA synthetase protein-coding gene gene with protein product Approved 18q21.31 18q21.31 NARS1 asparagine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class II 132 1986-01-01 2014-05-06 4677 ENSG00000134440 OTTHUMG00000180125 uc002lgs.4 D84273 NM_004539 CCDS32837 O43776 "6836455|9421509" MGI:1917473 RGD:1307238 NARS 108410 6.1.1.22 +HGNC:26274 NARS2 asparaginyl-tRNA synthetase 2, mitochondrial (putative) protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "FLJ23441|SLM5" asparagine tRNA ligase 2, mitochondrial (putative) DFNB94 deafness, autosomal recessive 94 Aminoacyl tRNA synthetases, Class II 132 2006-01-17 2007-02-23 2015-04-29 79731 ENSG00000137513 OTTHUMG00000166702 uc001ozi.3 BC007800 NM_024678 "CCDS8261|CCDS58164" Q96I59 "15779907|25807530" MGI:2142075 RGD:1305145 NARS2 612803 448718 6.1.1.22 +HGNC:19933 NARSP1 asparaginyl-tRNA synthetase pseudogene 1 pseudogene pseudogene Approved 14q12 14q12 NARSP asparaginyl-tRNA synthetase pseudogene 2003-01-13 2010-02-26 2010-02-26 2014-11-19 319127 NG_002505 PGOHUM00000258791 +HGNC:50481 NARSP2 asparaginyl-tRNA synthetase pseudogene 2 pseudogene pseudogene Approved 8q12.3 08q12.3 2014-05-06 2014-05-06 100287895 ENSG00000253789 OTTHUMG00000164342 NG_022421 PGOHUM00000249690 +HGNC:7644 NASP nuclear autoantigenic sperm protein protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "FLB7527|FLJ31599|FLJ35510|MGC19722|MGC20372|MGC2297|DKFZp547F162|PRO1999" NASP histone chaperone nuclear autoantigenic sperm protein (histone-binding) Tetratricopeptide repeat domain containing 769 1993-11-02 2016-03-09 2016-03-09 4678 ENSG00000132780 OTTHUMG00000007826 uc001coi.3 M97856 NM_002482 "CCDS524|CCDS525|CCDS55597" P49321 1426632 MGI:1355328 RGD:1359609 NASP 603185 +HGNC:29910 NASPP1 nuclear autoantigenic sperm protein pseudogene 1 pseudogene pseudogene Approved 8q12 08q12 2004-01-23 2006-01-11 282694 NG_002431 11674998 +HGNC:7645 NAT1 N-acetyltransferase 1 protein-coding gene gene with protein product Approved 8p22 08p22 arylamine N-acetyltransferase 1 AAC1 N-acetyltransferase 1 (arylamine N-acetyltransferase) Arylamine N-acetyltransferases 1133 1990-09-10 2016-06-21 2016-06-21 9 ENSG00000171428 OTTHUMG00000097001 uc003wyq.4 BC047666 NM_000662 "CCDS6007|CCDS55205" P18440 7773298 "MGI:102537|MGI:109201|MGI:97279" RGD:70490 Arylamine N-Acetyltransferase|http://www.louisville.edu/medschool/pharmacology/NAT.html NAT1 108345 2.3.1.5 +HGNC:7646 NAT2 N-acetyltransferase 2 protein-coding gene gene with protein product Approved 8p22 08p22 arylamine N-acetyltransferase 2 AAC2 N-acetyltransferase 2 (arylamine N-acetyltransferase) Arylamine N-acetyltransferases 1133 1990-09-10 2016-06-21 2016-06-21 10 ENSG00000156006 OTTHUMG00000130826 uc003wyw.2 D90042 NM_000015 CCDS6008 P11245 7773298 "MGI:102537|MGI:109201|MGI:97279" RGD:70492 Arylamine N-Acetyltransferase|http://www.louisville.edu/medschool/pharmacology/NAT.html NAT2 612182 241984 2.3.1.5 +HGNC:30252 NAT6 N-acetyltransferase 6 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FUS2 "N-acetyltransferase 6|N-acetyltransferase 6 (GCN5-related)" GCN5 related N-acetyltransferases 1134 2004-05-12 2016-02-12 2016-10-05 24142 ENSG00000243477 OTTHUMG00000156939 uc003czj.4 AF040705 NM_012191 "CCDS43095|CCDS56258" Q93015 "11929860|11085536" MGI:1888902 RGD:6496422 NAT6 607073 2.3.1.- +HGNC:18069 NAT8 N-acetyltransferase 8 (putative) protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "Hcml1|TSC501|GLA|ATase2" "N-acetyltransferase 8|N-acetyltransferase 8 (GCN5-related, putative)" GCN5 related N-acetyltransferases 1134 2002-01-25 2016-02-12 2016-10-05 9027 ENSG00000144035 OTTHUMG00000129818 uc002sji.2 AB013094 NM_003960 CCDS1926 Q9UHE5 "11397015|9852678|19011241" MGI:1915646 RGD:621609 NAT8 606716 +HGNC:30235 NAT8B N-acetyltransferase 8B (putative, gene/pseudogene) protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "Hcml2|NAT8BP" "N-acetyltransferase 8B (gene/pseudogene)|N-acetyltransferase 8B (GCN5-related, putative, gene/pseudogene)" 2006-10-24 2016-02-12 2016-02-12 51471 ENSG00000204872 OTTHUMG00000152811 uc061kqq.2 BC069564 NM_016347 Q9UHF3 "11397015|16395595|19011241" MGI:1915646 RGD:621605 608190 +HGNC:26742 NAT8L N-acetyltransferase 8 like protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "FLJ37478|Hcml3" Shati N-acetyltransferase 8-like (GCN5-related, putative) GCN5 related N-acetyltransferases 1134 2006-10-24 2016-02-12 2016-04-25 339983 ENSG00000185818 OTTHUMG00000121151 uc003geq.3 AK094797 NM_178557 CCDS3359 Q8N9F0 "11397015|24105954|19807691" MGI:2447776 RGD:1305719 NAT8L 610647 +HGNC:23133 NAT9 N-acetyltransferase 9 (putative) protein-coding gene gene with protein product Approved 17q25.2 17q25.2 DKFZP564C103 "N-acetyltransferase 9|N-acetyltransferase 9 (GCN5-related, putative)" GCN5 related N-acetyltransferases 1134 2005-05-23 2016-02-12 2016-04-01 26151 ENSG00000109065 OTTHUMG00000178870 uc060jpt.1 AK123115 NM_015654 "CCDS11706|CCDS77101|CCDS77102|CCDS77103|CCDS77104|CCDS82199|CCDS82200" Q9BTE0 "14608357|21688147" MGI:1913426 RGD:1307096 NAT9 2.3.1.- +HGNC:29830 NAT10 N-acetyltransferase 10 protein-coding gene gene with protein product Approved 11p13 11p13 "hALP|FLJ10774|FLJ12179|NET43|KIAA1709" "N-acetyltransferase 10|N-acetyltransferase 10 (GCN5-related)" GCN5 related N-acetyltransferases 1134 2006-02-20 2016-02-12 2016-02-12 55226 ENSG00000135372 OTTHUMG00000166249 uc001mvk.4 AF489535 NM_024662 "CCDS7889|CCDS44568" Q9H0A0 "14592445|21177859|25653167" MGI:2138939 RGD:1306717 NAT10 609221 2.3.1.- +HGNC:28918 NAT14 N-acetyltransferase 14 (putative) protein-coding gene gene with protein product Approved 19q13.42 19q13.42 KLP1 K562 cells-derived leucine zipper-like protein 1 "N-acetyltransferase 14|N-acetyltransferase 14 (GCN5-related, putative)" GCN5 related N-acetyltransferases 1134 2006-08-21 2016-02-12 2016-02-12 57106 ENSG00000090971 OTTHUMG00000180854 uc002qle.3 AB055059 NM_020378 CCDS12926 Q8WUY8 10873651 MGI:3039561 RGD:1565991 NAT14 +HGNC:22030 NAT16 N-acetyltransferase 16 (putative) protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FLJ39237 C7orf52 "chromosome 7 open reading frame 52|N-acetyltransferase 16 (GCN5-related, putative)" GCN5 related N-acetyltransferases 1134 2007-07-10 2011-11-25 2016-02-12 2016-02-12 375607 ENSG00000167011 OTTHUMG00000157110 uc003uxy.2 AK096556 NM_198571 CCDS5713 Q8N8M0 24121108 615783 +HGNC:30770 NATD1 N-acetyltransferase domain containing 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "MGC33894|Gtlf3b" "transcript expressed during hematopoiesis 2|gene trap locus F3b" C17orf103 chromosome 17 open reading frame 103 2009-03-11 2014-05-29 2014-05-29 2015-01-29 256302 ENSG00000274180 OTTHUMG00000130764 BC029527 NM_152914 Q8N6N6 12477932 MGI:1344388 RGD:6491771 +HGNC:15 NATP N-acetyltransferase pseudogene pseudogene pseudogene Approved 8p22 08p22 NATP1 AACP arylamide acetylase pseudogene Arylamine N-acetyltransferases 1133 1992-07-09 2013-08-22 2013-08-22 2014-11-18 11 ENSG00000253937 OTTHUMG00000163710 X17060 NG_004857 "2340091|9284941" PGOHUM00000260428 +HGNC:15989 NAV1 neuron navigator 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "FLJ12560|FLJ14203|KIAA1151|MGC14961|POMFIL3|steerin-1|DKFZp781D0314" "neuron navigator-1|pore membrane and/or filament interacting like protein 3" 2001-06-29 2016-10-05 89796 ENSG00000134369 OTTHUMG00000035766 uc057oje.1 AF086348 NM_020443 "CCDS1414|CCDS53456" Q8NEY1 "12079279|12062803" MGI:2183683 RGD:1590261 NAV1 611628 +HGNC:15997 NAV2 neuron navigator 2 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "FLJ10633|FLJ11030|HELAD1|KIAA1419|POMFIL2|RAINB1|FLJ23707" "pore membrane and/or filament interacting like protein 2|retinoic acid inducible gene in neuroblastoma 1|helicase, APC down-regulated 1" 2001-06-29 2015-09-01 89797 ENSG00000166833 OTTHUMG00000151837 uc001mpp.4 AB037840 NM_145117 "CCDS7850|CCDS7851|CCDS44552|CCDS53612|CCDS58126" Q8IVL1 "12079279|12062803" MGI:2183691 RGD:619778 NAV2 607026 3.6.1.1 +HGNC:40744 NAV2-AS1 NAV2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.1 11p15.1 NAV2 antisense RNA 1 (non-protein coding) 2011-05-24 2012-08-15 2014-11-19 100874015 ENSG00000254894 OTTHUMG00000167398 uc057zun.1 +HGNC:40743 NAV2-AS2 NAV2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 11p15.1 11p15.1 NAV2 antisense RNA 2 (non-protein coding) 2011-05-24 2012-08-15 2014-11-19 100874014 ENSG00000254453 OTTHUMG00000167397 uc057zuj.1 NR_046672 +HGNC:40742 NAV2-AS3 NAV2 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 11p15.1 11p15.1 NAV2 antisense RNA 3 (non-protein coding) 2011-05-24 2012-08-15 2014-11-19 100874013 ENSG00000254542 OTTHUMG00000167396 uc057zue.1 +HGNC:40741 NAV2-AS4 NAV2 antisense RNA 4 non-coding RNA RNA, long non-coding Approved 11p15.1 11p15.1 NAV2 antisense RNA 4 (non-protein coding) 2011-05-24 2012-08-15 2014-11-19 399876 ENSG00000254622 OTTHUMG00000166105 uc057ztw.1 NR_033989 +HGNC:40740 NAV2-AS5 NAV2 antisense RNA 5 non-coding RNA RNA, long non-coding Approved 11p15.1 11p15.1 NAV2 antisense RNA 5 (non-protein coding) 2011-05-24 2012-08-15 2014-11-19 100874012 ENSG00000255043 OTTHUMG00000166104 uc031pzi.2 NR_049725 +HGNC:41416 NAV2-IT1 NAV2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 11p15.1 11p15.1 NAV2 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874305 ENSG00000255270 OTTHUMG00000166103 uc057ztt.1 +HGNC:15998 NAV3 neuron navigator 3 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 "KIAA0938|POMFIL1" "pore membrane and/or filament interacting like protein 1|steerin 3" 2001-06-29 2015-07-22 89795 ENSG00000067798 OTTHUMG00000170001 uc001syo.5 AB023155 NM_001024383 "CCDS41815|CCDS66432" Q8IVL0 "12079279|12062803" MGI:2183703 RGD:1306259 NAV3 611629 +HGNC:25576 NAXD NAD(P)HX dehydratase protein-coding gene gene with protein product Approved 13q34 13q34 "LP3298|FLJ10769" ATP-dependent NAD(P)H-hydrate dehydratase CARKD carbohydrate kinase domain containing 2008-08-14 2016-03-09 2016-03-09 2016-03-09 55739 ENSG00000213995 OTTHUMG00000017345 uc001vrc.4 AF151071 NM_018210 "CCDS9513|CCDS55903" Q8IW45 21994945 MGI:1913353 RGD:1562691 615910 4.2.1.93 +HGNC:18453 NAXE NAD(P)HX epimerase protein-coding gene gene with protein product Approved 1q22 01q22 "AIBP|MGC119143|MGC119144|MGC119145|YJEFN1" "apoA-I binding protein|NAD(P)H-hydrate epimerase" APOA1BP apolipoprotein A-I binding protein 2002-08-01 2016-03-09 2016-03-09 2016-10-05 128240 ENSG00000163382 OTTHUMG00000033206 uc001fph.4 AJ315849 NM_144772 CCDS1145 Q8NCW5 "11991719|17533573|21994945" MGI:2180167 RGD:1304699 608862 5.1.99.6 +HGNC:15625 NBAS neuroblastoma amplified sequence protein-coding gene gene with protein product Approved 2p24.3 02p24.3 NAG 2009-02-16 2014-11-19 51594 ENSG00000151779 OTTHUMG00000121153 uc002rcc.3 BC051792 NM_015909 CCDS1685 A2RRP1 "9926938|12706883" MGI:1918419 RGD:1585140 NBAS 608025 394899 +HGNC:49075 NBAT1 neuroblastoma associated transcript 1 non-coding RNA RNA, long non-coding Approved 6p22.3 06p22.3 NBAT-1 neuroblastoma associated transcript-1 CASC14 cancer susceptibility candidate 14 (non-protein coding) Long non-coding RNAs 788 2013-08-19 2014-12-10 2014-12-10 2016-03-24 729177 ENSG00000260455 OTTHUMG00000175902 NR_034143 "25859549|26378045" 616206 +HGNC:7648 NBEA neurobeachin protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "KIAA1544|BCL8B|FLJ10197|LYST2" "WD repeat domain containing|A-kinase anchoring proteins|BEACH domain containing " "362|396|1230" 1999-12-16 2016-10-12 26960 ENSG00000172915 OTTHUMG00000016724 uc058wka.1 AF467288 NM_015678 "CCDS45026|CCDS55894" Q8NFP9 10501977 MGI:1347075 RGD:1562629 LRG_602|http://www.lrg-sequence.org/LRG/LRG_602 NBEA 604889 +HGNC:39908 NBEA-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:20681 NBEAL1 neurobeachin like 1 protein-coding gene gene with protein product Approved 2q33.2 02q33.2 MGC164581 "ALS2CR17|ALS2CR16" "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 17|amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 16|neurobeachin-like 1" "WD repeat domain containing|BEACH domain containing " "362|1230" 2004-11-26 2015-11-13 2016-10-05 65065 ENSG00000144426 OTTHUMG00000154129 uc002uzt.4 AY172970 NM_001114132 CCDS46495 Q6ZS30 15193433 MGI:2444343 RGD:1594799 NBEAL1 609816 +HGNC:31928 NBEAL2 neurobeachin like 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 KIAA0540 neurobeachin-like 2 "WD repeat domain containing|BEACH domain containing " "362|1230" 2005-03-04 2015-11-13 2016-10-12 23218 ENSG00000160796 OTTHUMG00000156497 uc003cqp.4 AB011112 NM_015175 CCDS46817 Q6ZNJ1 "21765412|21765411" MGI:2448554 RGD:1306501 LRG_568|http://www.lrg-sequence.org/LRG/LRG_568 NBEAL2 614169 279603 +HGNC:1007 NBEAP1 neurobeachin pseudogene 1 pseudogene pseudogene Approved 15q11.2 15q11.2 BCL8A BCL8 B-cell CLL/lymphoma 8 1997-04-16 2011-05-03 2011-05-03 2014-11-19 606 ENSG00000258590 OTTHUMG00000171717 NR_027992 P0C6P0 9159141 601889 PGOHUM00000246623 +HGNC:40003 NBEAP2 neurobeachin pseudogene 2 pseudogene pseudogene Approved 2q21.1 02q21.1 BCL8D 2011-05-03 2011-05-03 100418881 NG_023729 12160729 +HGNC:40004 NBEAP3 neurobeachin pseudogene 3 pseudogene pseudogene Approved 22q11.1 22q11.1 BCL8C 2011-05-03 2011-05-03 100418905 ENSG00000223875 OTTHUMG00000140196 NG_027403 12160729 PGOHUM00000246184 +HGNC:40009 NBEAP4 neurobeachin pseudogene 4 pseudogene pseudogene Approved 15q11.2 15q11.2 2011-05-03 2011-05-03 100418897 NG_025284 PGOHUM00000246634 +HGNC:40010 NBEAP5 neurobeachin pseudogene 5 pseudogene pseudogene Approved 14q11.2 14q11.2 2011-05-03 2011-05-03 100418903 NG_027242 PGOHUM00000247715 +HGNC:40011 NBEAP6 neurobeachin pseudogene 6 pseudogene pseudogene Approved 14q11.2 14q11.2 2011-05-03 2011-05-03 100418904 NG_027320 PGOHUM00000248012 +HGNC:7650 NBL1 neuroblastoma 1, DAN family BMP antagonist protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "D1S1733E|NB|DAN|NO3|DAND1" "neuroblastoma candidate region, suppression of tumorigenicity 1|neuroblastoma suppressor of tumorigenicity 1|differential screening-selected gene aberrant in neuroblastoma" neuroblastoma, suppression of tumorigenicity 1 DAN family 1246 1997-11-20 2013-02-26 2016-10-05 4681 ENSG00000158747 OTTHUMG00000002700 uc031plk.1 NM_005380 "CCDS196|CCDS41278|CCDS72720" P41271 7633401 MGI:104591 RGD:3151 NBL1 600613 +HGNC:7652 NBN nibrin protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "ATV|AT-V2|AT-V1" "NBS|NBS1" Nijmegen breakage syndrome 1 (nibrin) "BRCA1 C complex|MRN complex" "1336|1344" 1997-11-28 2005-06-02 2005-06-02 2016-10-12 4683 ENSG00000104320 OTTHUMG00000153546 uc003yej.2 AF058696 NM_001024688 "CCDS6249|CCDS43753" O60934 "9590181|9590180" MGI:1351625 RGD:621420 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=NBN|LRG_158|http://www.lrg-sequence.org/LRG/LRG_158" NBN 602667 123688 +HGNC:26088 NBPF1 neuroblastoma breakpoint family member 1 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "FLJ20719|KIAA1693" neuroblastoma breakpoint family, member 1 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 55672 ENSG00000219481 OTTHUMG00000002487 uc001ayw.5 AB051480 NM_017940 Q3BBV0 "11214970|16079250" 610501 +HGNC:31987 NBPF2P neuroblastoma breakpoint family member 2, pseudogene pseudogene pseudogene Approved 1p36.12 01p36.12 neuroblastoma breakpoint family, member 2, pseudogene Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 343381 ENSG00000227001 OTTHUMG00000002941 NG_005533 16079250 PGOHUM00000243928 +HGNC:25076 NBPF3 neuroblastoma breakpoint family member 3 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 AE2 neuroblastoma breakpoint family, member 3 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 84224 ENSG00000142794 OTTHUMG00000002944 uc001ber.5 BC024011 NM_032264 "CCDS216|CCDS57976|CCDS57977|CCDS81275" Q9H094 "11230166|16079250" NBPF3 612992 PGOHUM00000295585 +HGNC:26550 NBPF4 neuroblastoma breakpoint family member 4 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 FLJ32833 neuroblastoma breakpoint family, member 4 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 148545 ENSG00000196427 OTTHUMG00000011318 uc009wen.3 AK057395 NM_152488 CCDS44182 Q96M43 16079250 NBPF4 613994 +HGNC:24491 NBPF5P neuroblastoma breakpoint family member 5, pseudogene pseudogene pseudogene Approved 1p13.3 01p13.3 NBPF5 "neuroblastoma breakpoint family, member 5|neuroblastoma breakpoint family, member 5, pseudogene" Neuroblastoma breakpoint family 662 2005-11-23 2013-01-16 2015-11-18 2015-11-18 100507044 ENSG00000243967 OTTHUMG00000011317 BC043522 NG_028895 Q86XG9 16079250 613995 PGOHUM00000251119 +HGNC:31988 NBPF6 neuroblastoma breakpoint family member 6 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 neuroblastoma breakpoint family, member 6 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 653149 ENSG00000186086 OTTHUMG00000039830 uc009wep.3 XM_926213 CCDS44184 Q5VWK0 16079250 NBPF6 613996 +HGNC:31989 NBPF7 neuroblastoma breakpoint family member 7 other unknown Approved 1p12 01p12 neuroblastoma breakpoint family, member 7 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 343505 ENSG00000215864 OTTHUMG00000012178 XM_291607 P0C2Y1 16079250 NBPF7 613997 +HGNC:31990 NBPF8 neuroblastoma breakpoint family member 8 protein-coding gene gene with protein product Approved 1p11.2 01p11.2 NBPF8P "neuroblastoma breakpoint family, member 8, pseudogene|neuroblastoma breakpoint family, member 8" Neuroblastoma breakpoint family 662 2005-11-23 2013-04-24 2015-11-18 2015-11-18 728841 ENSG00000270231 OTTHUMG00000185013 AY894572 NM_001037501 Q3BBV2 16079250 613998 +HGNC:31991 NBPF9 neuroblastoma breakpoint family member 9 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 AE01 neuroblastoma breakpoint family, member 9 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2016-10-05 400818 ENSG00000269713 OTTHUMG00000013845 uc057kjy.1 NM_001037675 "CCDS72895|CCDS72896" Q3BBW0 16079250 NBPF9 613999 +HGNC:31992 NBPF10 neuroblastoma breakpoint family member 10 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 AG1 neuroblastoma breakpoint family, member 10 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 100132406 ENSG00000271425 OTTHUMG00000013757 uc057kcv.1 BC021111 NM_001039703 CCDS76206 Q6P3W6 16079250 NBPF10 614000 +HGNC:31993 NBPF11 neuroblastoma breakpoint family member 11 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 NBPF24 "neuroblastoma breakpoint family, member 24|neuroblastoma breakpoint family, member 11" Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2016-10-05 200030 ENSG00000263956 OTTHUMG00000013880 uc057kga.1 NM_183372 Q86T75 16079250 NBPF11 614001 +HGNC:24297 NBPF12 neuroblastoma breakpoint family member 12 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 COAS1 KIAA1245 "KIAA1245|neuroblastoma breakpoint family, member 12" Neuroblastoma breakpoint family 662 2005-07-14 2011-06-28 2015-11-18 2015-11-18 149013 ENSG00000268043 OTTHUMG00000043708 uc057kdn.1 BG154169 XM_003119146 CCDS72881 Q5TAG4 11948409 NBPF12 608607 +HGNC:31995 NBPF13P neuroblastoma breakpoint family member 13, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 neuroblastoma breakpoint family, member 13, pseudogene Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 644861 ENSG00000227242 OTTHUMG00000041474 NR_103466 16079250 PGOHUM00000251082 +HGNC:25232 NBPF14 neuroblastoma breakpoint family member 14 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 DJ328E19.C1.1 neuroblastoma breakpoint family, member 14 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 25832 ENSG00000270629 OTTHUMG00000188198 uc057kib.1 AK092351 NM_015383 Q5TI25 "8619474|9110174|16079250" NBPF14 614003 +HGNC:28791 NBPF15 neuroblastoma breakpoint family member 15 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 MGC8902 NBPF16 "neuroblastoma breakpoint family, member 16|neuroblastoma breakpoint family, member 15" Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 284565 ENSG00000266338 OTTHUMG00000013634 uc010pay.3 BC023087 NM_173638 CCDS72852 Q8N660 16079250 NBPF15 "610414|614005" +HGNC:31997 NBPF17P neuroblastoma breakpoint family member 17, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 "NBPF23P|NBPF23" "neuroblastoma breakpoint family, member 23, pseudogene|neuroblastoma breakpoint family, member 23|neuroblastoma breakpoint family, member 17, pseudogene" Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2016-10-05 401967 ENSG00000179571 OTTHUMG00000041567 NG_033263 16079250 612970 PGOHUM00000244259 +HGNC:31998 NBPF18P neuroblastoma breakpoint family member 18, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 neuroblastoma breakpoint family, member 18, pseudogene Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 441908 NR_103561 16079250 +HGNC:31999 NBPF19 neuroblastoma breakpoint family member 19 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 neuroblastoma breakpoint family, member 19 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 101060226 ENSG00000271383 OTTHUMG00000013900 uc031uwi.2 XM_017003019 A0A087WUL8 16079250 614006 +HGNC:32000 NBPF20 neuroblastoma breakpoint family member 20 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 neuroblastoma breakpoint family, member 20 Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2015-11-18 100288142 ENSG00000162825 OTTHUMG00000042439 uc031usp.2 NM_001278267 CCDS72856 Q3BBV1 16079250 NBPF20 614007 +HGNC:32001 NBPF21P neuroblastoma breakpoint family member 21, pseudogene pseudogene pseudogene Approved 3p22.2 03p22.2 neuroblastoma breakpoint family, member 21, pseudogene Neuroblastoma breakpoint family 662 2005-11-23 2015-11-18 2016-10-05 205655 ENSG00000231382 OTTHUMG00000155806 XM_497917 16079250 PGOHUM00000250233 +HGNC:28731 NBPF22P neuroblastoma breakpoint family member 22, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 MGC48637 neuroblastoma breakpoint family, member 22, pseudogene Neuroblastoma breakpoint family 662 2007-07-24 2015-11-18 2015-11-18 285622 ENSG00000205449 OTTHUMG00000162585 BC050328 XM_208333 16079250 PGOHUM00000251384 +HGNC:45046 NBPF25P neuroblastoma breakpoint family member 25, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 neuroblastoma breakpoint family, member 25, pseudogene Neuroblastoma breakpoint family 662 2014-01-16 2015-11-18 2015-11-18 101929780 ENSG00000272150 OTTHUMG00000188662 NR_104217 PGOHUM00000295869 +HGNC:49571 NBPF26 neuroblastoma breakpoint family member 26 protein-coding gene gene with protein product Approved 1p11.2 01p11.2 neuroblastoma breakpoint family, member 26 Neuroblastoma breakpoint family 662 2014-01-16 2015-11-18 2015-12-11 101060684 ENSG00000273136 OTTHUMG00000189374 XM_017003011 B4DH59 24885025 +HGNC:6746 NBR1 NBR1, autophagy cargo receptor protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "CA125|KIAA0049|1A1-3B" M17S2 "membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125)|neighbor of BRCA1 gene 1" Zinc fingers ZZ-type 91 1994-08-29 2005-02-16 2016-05-24 2016-05-24 4077 ENSG00000188554 OTTHUMG00000180878 uc010czd.4 X76952 NM_005899 "CCDS45694|CCDS77037|CCDS77038" Q14596 "8069304|26112016" MGI:108498 RGD:69195 NBR1 166945 +HGNC:20691 NBR2 neighbor of BRCA1 gene 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 NCRNA00192 non-protein coding RNA 192 neighbor of BRCA1 gene 2 2003-03-20 2009-08-21 2016-10-05 10230 ENSG00000198496 OTTHUMG00000140395 U88573 NR_003108 O15453 "9215675|15777733|26999735" NBR2 +HGNC:7655 NCALD neurocalcin delta protein-coding gene gene with protein product Approved 8q22.3 08q22.3 EF-hand domain containing 863 2000-06-29 2015-09-01 83988 ENSG00000104490 OTTHUMG00000164876 uc003ykl.4 AF052142 XM_017013900 CCDS6292 P61601 11267673 MGI:1196326 RGD:1560287 NCALD 606722 +HGNC:7656 NCAM1 neural cell adhesion molecule 1 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 "NCAM|CD56" "CD molecules|Fibronectin type III domain containing|I-set domain containing" "471|555|593" 2001-06-22 2014-11-19 4684 ENSG00000149294 OTTHUMG00000167196 uc058hjx.1 NM_000615 "CCDS73384|CCDS73385|CCDS73386|CCDS73387|CCDS73388" P13591 MGI:97281 RGD:67378 NCAM1 116930 objectId:2769 CD56 +HGNC:48675 NCAM1-AS1 NCAM1 antisense RNA1 non-coding RNA RNA, long non-coding Approved 11q23.2 11q23.2 2013-06-06 2013-06-06 100288346 ENSG00000227487 OTTHUMG00000167663 NR_034101 +HGNC:7657 NCAM2 neural cell adhesion molecule 2 protein-coding gene gene with protein product Approved 21q21.1 21q21.1 "NCAM21|MGC51008" "Fibronectin type III domain containing|I-set domain containing" "555|593" 1997-04-25 2016-10-05 4685 ENSG00000154654 OTTHUMG00000078121 uc002yld.3 NM_004540 CCDS42910 O15394 9226371 MGI:97282 RGD:1303131 NCAM2 602040 +HGNC:2465 NCAN neurocan protein-coding gene gene with protein product Approved 19p12 19p12 neurocan proteoglycan CSPG3 chondroitin sulfate proteoglycan 3 "Endogenous ligands|Hyalectan proteoglycans|V-set domain containing|Sushi domain containing|C-type lectin domain containing" "542|574|590|1179|1298" 1997-12-23 2007-02-15 2007-02-15 2014-11-19 1463 ENSG00000130287 OTTHUMG00000182218 uc002nlz.4 AF026547 NM_004386 CCDS12397 O14594 "1326557|21353194" MGI:104694 RGD:619941 NCAN 600826 +HGNC:24305 NCAPD2 non-SMC condensin I complex subunit D2 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CNAP1|hCAP-D2|CAP-D2|KIAA0159" chromosome condensation related SMC associated protein 1 non-SMC condensin I complex, subunit D2 2006-09-04 2015-11-12 2015-11-12 9918 ENSG00000010292 OTTHUMG00000168513 uc001qoo.3 D63880 NM_014865 CCDS8548 Q15021 "8590280|10958694" MGI:1915548 RGD:1562596 NCAPD2 615638 +HGNC:43831 NCAPD2P1 non-SMC condensin I complex subunit D2 pseudogene 1 pseudogene pseudogene Approved 7p14.3 07p14.3 non-SMC condensin I complex, subunit D2 pseudogene 1 2012-03-23 2015-11-12 2015-11-12 100421175 ENSG00000230356 OTTHUMG00000153020 NG_026451 PGOHUM00000232646 +HGNC:28952 NCAPD3 non-SMC condensin II complex subunit D3 protein-coding gene gene with protein product Approved 11q25 11q25 "hCAP-D3|CAP-D3|hHCP-6|KIAA0056|FLJ42888|hcp-6" non-SMC condensin II complex, subunit D3 2006-09-04 2015-11-12 2015-11-12 23310 ENSG00000151503 OTTHUMG00000167172 uc001qhd.2 AK124878 NM_015261 CCDS31723 P42695 "7584044|8619474|14532007" MGI:2142989 RGD:1562176 NCAPD3 609276 +HGNC:24304 NCAPG non-SMC condensin I complex subunit G protein-coding gene gene with protein product Approved 4p15.31 04p15.31 "FLJ12450|hCAP-G|CAP-G|YCG1" chromosome condensation protein G non-SMC condensin I complex, subunit G 2006-09-04 2015-11-12 2016-10-05 64151 ENSG00000109805 OTTHUMG00000128539 uc003gpp.5 AF331796 NM_022346 CCDS3424 Q9BPX3 "10910072|11136719" MGI:1930197 RGD:1562646 NCAPG 606280 +HGNC:21904 NCAPG2 non-SMC condensin II complex subunit G2 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "FLJ20311|MTB|CAP-G2|hCAP-G2" LUZP5 "leucine zipper protein 5|non-SMC condensin II complex, subunit G2" 2005-04-20 2006-09-04 2015-11-12 2015-11-12 54892 ENSG00000146918 OTTHUMG00000151438 uc003wnv.3 BC043404 NM_017760 "CCDS43686|CCDS64816" Q86XI2 14532007 MGI:1923294 RGD:1308406 NCAPG2 608532 +HGNC:51904 NCAPGP1 non-SMC condensin I complex subunit G pseudogene 1 pseudogene pseudogene Approved 8q24.12 08q24.12 non-SMC condensin I complex, subunit G pseudogene 1 2015-09-21 2015-11-12 2015-11-12 100421096 ENSG00000250290 OTTHUMG00000160497 NG_026071 PGOHUM00000303368 +HGNC:51905 NCAPGP2 non-SMC condensin I complex subunit G pseudogene 2 pseudogene pseudogene Approved 15q13.2 15q13.2 non-SMC condensin I complex, subunit G pseudogene 2 2015-09-21 2015-11-12 2015-11-12 100421148 ENSG00000259749 OTTHUMG00000172195 NG_025369 PGOHUM00000293162 +HGNC:1112 NCAPH non-SMC condensin I complex subunit H protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "CAP-H|hCAP-H" BRRN1 "barren (Drosophila) homolog|barren homolog (Drosophila)|barren homolog 1 (Drosophila)|non-SMC condensin I complex, subunit H" 1998-02-11 2006-09-04 2015-11-12 2015-11-12 23397 ENSG00000121152 OTTHUMG00000130451 uc002svz.3 BC024211 NM_015341 "CCDS2021|CCDS62960" Q15003 9417923 MGI:2444777 RGD:1596799 NCAPH 602332 +HGNC:25071 NCAPH2 non-SMC condensin II complex subunit H2 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "384D8-2|hCAP-H2|CAP-H2" "kleisin beta|CAP-H2 subunit of the condensin II complex" non-SMC condensin II complex, subunit H2 2006-09-04 2015-11-12 2015-11-12 29781 ENSG00000025770 OTTHUMG00000150205 uc003blr.5 BC001937 NM_152299 "CCDS14094|CCDS43038|CCDS54546" Q6IBW4 10493829 MGI:1289164 RGD:1565937 NCAPH2 611230 +HGNC:7658 NCBP1 nuclear cap binding protein subunit 1 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "CBP80|Sto1" NCBP "nuclear cap binding protein subunit 1, 80kD|nuclear cap binding protein subunit 1, 80kDa" 1995-01-05 2015-11-09 2016-10-05 4686 ENSG00000136937 OTTHUMG00000020332 uc004axq.4 BC001450 NM_002486 CCDS6728 Q09161 "7937105|8812508" MGI:1891840 RGD:1308973 NCBP1 600469 +HGNC:7659 NCBP2 nuclear cap binding protein subunit 2 protein-coding gene gene with protein product Approved 3q29 03q29 "NIP1|CBP20|Cbc2" "nuclear cap binding protein subunit 2, 20kD|nuclear cap binding protein subunit 2, 20kDa" RNA binding motif containing 725 2000-01-17 2015-11-09 2015-11-09 22916 ENSG00000114503 OTTHUMG00000155520 uc003fxd.2 D59253 NM_007362 "CCDS3323|CCDS46986|CCDS77878" P52298 "7478990|7651522|8682299" MGI:1915342 RGD:1596188 NCBP2 605133 +HGNC:40392 NCBP2-AS1 NCBP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 NCBP2 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874001 ENSG00000225578 OTTHUMG00000155523 uc062sda.1 +HGNC:25121 NCBP2-AS2 NCBP2 antisense RNA 2 (head to head) other unknown Approved 3q29 03q29 2013-05-17 2016-07-20 152217 ENSG00000270170 OTTHUMG00000184107 BC007882 NM_138487 Q69YL0 12477932 +HGNC:31795 NCBP2L nuclear cap binding protein subunit 2-like protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 RNA binding motif containing 725 2004-08-17 2015-09-01 392517 ENSG00000170935 OTTHUMG00000022169 uc065apo.1 XM_373362 A6PVI3 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NCBP2L NCBP2L +HGNC:24612 NCBP3 nuclear cap binding subunit 3 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "HSA277841|ELG" ELG protein C17orf85 chromosome 17 open reading frame 85 2006-06-23 2015-09-24 2015-09-24 2015-09-24 55421 ENSG00000074356 OTTHUMG00000177672 NM_018553 CCDS45578 Q53F19 "11412301|26382858" MGI:1914124 RGD:1308139 616624 +HGNC:33739 NCCRP1 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "LOC342897|NCCRP-1|FBXO50" 2008-10-22 2008-11-19 2016-05-12 342897 ENSG00000188505 OTTHUMG00000182802 uc002okq.2 "AK123941|BC067874" NM_001001414 CCDS12529 Q6ZVX7 22087255 MGI:2685009 RGD:1305932 NCCRP1 615901 +HGNC:17597 NCDN neurochondrin protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "NCDN-1|NCDN-2" 2004-11-11 2014-11-19 23154 ENSG00000020129 OTTHUMG00000059204 uc001bza.3 AB011179 NM_014284 "CCDS392|CCDS30672" Q9UBB6 15007648 MGI:1347351 RGD:621734 NCDN 608458 +HGNC:29260 NCEH1 neutral cholesterol ester hydrolase 1 protein-coding gene gene with protein product Approved 3q26.31 03q26.31 "KIAA1363|NCEH" AADACL1 arylacetamide deacetylase-like 1 2005-02-25 2009-07-23 2009-07-23 2014-11-19 57552 ENSG00000144959 OTTHUMG00000156872 uc003fig.4 AB037784 NM_020792 "CCDS54681|CCDS54682|CCDS33893" Q6PIU2 10718198 MGI:2443191 RGD:1311104 NCEH1 613234 S09.992 +HGNC:7660 NCF1 neutrophil cytosolic factor 1 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "p47phox|NOXO2|NCF1A|SH3PXD1A" "NADPH oxidase organizer 2|chronic granulomatous disease, autosomal 1" neutrophil cytosolic factor 1 (47kD, chronic granulomatous disease, autosomal 1) 1989-05-25 2008-07-31 2016-10-12 653361 ENSG00000158517 OTTHUMG00000149965 uc003ubb.5 M25665 NM_000265 CCDS34657 P14598 MGI:97283 RGD:61307 "NCF1base: Mutation registry for autosomal recessive chronic granulomatous disease (CGD), deficiency of p47phox|http://structure.bmc.lu.se/idbase/NCF1base/|LRG_87|http://www.lrg-sequence.org/LRG/LRG_87" NCF1 608512 123695 +HGNC:32522 NCF1B neutrophil cytosolic factor 1B pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 SH3PXD1B neutrophil cytosolic factor 1B 2006-02-13 2006-09-19 2014-03-20 654816 ENSG00000182487 OTTHUMG00000156804 NR_003186 A6NI72 PGOHUM00000258289 +HGNC:32523 NCF1C neutrophil cytosolic factor 1C pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 SH3PXD1C neutrophil cytosolic factor 1C 2006-02-13 2006-09-19 2008-10-31 654817 ENSG00000165178 OTTHUMG00000149964 NR_003187 A8MVU1 +HGNC:7661 NCF2 neutrophil cytosolic factor 2 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "p67phox|NOXA2" "NADPH oxidase activator 2|chronic granulomatous disease, autosomal 2" neutrophil cytosolic factor 2 (65kD, chronic granulomatous disease, autosomal 2) Tetratricopeptide repeat domain containing 769 1989-05-25 2008-07-31 2016-10-12 4688 ENSG00000116701 OTTHUMG00000035329 uc001gqk.5 BC001606 NM_000433 "CCDS1356|CCDS53446|CCDS53447" P19878 MGI:97284 RGD:1309424 "NCF2base: Mutation registry for autosomal recessive chronic granulomatous disease (CGD), deficiency of p67phox|http://structure.bmc.lu.se/idbase/NCF2base/|LRG_88|http://www.lrg-sequence.org/LRG/LRG_88" NCF2 608515 123701 +HGNC:7662 NCF4 neutrophil cytosolic factor 4 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "p40phox|SH3PXD4" neutrophil NADPH oxidase factor 4 "neutrophil cytosolic factor 4 (40kD)|neutrophil cytosolic factor 4, 40kDa" 1996-06-19 2015-11-09 2016-10-12 4689 ENSG00000100365 OTTHUMG00000150548 uc003apy.5 X77094 NM_000631 "CCDS13934|CCDS13935" Q15080 8839867 MGI:109186 RGD:1593157 LRG_159|http://www.lrg-sequence.org/LRG/LRG_159 NCF4 601488 204415 +HGNC:7664 NCK1 NCK adaptor protein 1 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 NCKalpha NCK SH2 domain containing 741 1998-11-04 2016-10-05 4690 ENSG00000158092 OTTHUMG00000159781 uc062odz.1 X17576 NM_006153 "CCDS3092|CCDS54644" P16333 "7806213|9737977" MGI:109601 RGD:1310688 NCK1 600508 +HGNC:49645 NCK1-AS1 NCK1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3q22.3 03q22.3 SLC35G2-AS1 SLC35G2 antisense RNA 1 2014-01-28 2014-01-28 101927597 ENSG00000239213 OTTHUMG00000159786 NR_110176 +HGNC:7665 NCK2 NCK adaptor protein 2 protein-coding gene gene with protein product Approved 2q12.2 02q12.2 NCKbeta SH2 domain containing 741 1998-10-29 2016-10-05 8440 ENSG00000071051 OTTHUMG00000153116 uc002tdg.4 AF043119 NM_003581 CCDS33266 O43639 "9737977|16752908" MGI:1306821 RGD:1305965 NCK2 604930 +HGNC:7666 NCKAP1 NCK associated protein 1 protein-coding gene gene with protein product Approved 2q32.1 02q32.1 "Nap1|HEM2|NAP125" 1999-07-19 2016-01-15 2016-10-05 10787 ENSG00000061676 OTTHUMG00000132623 uc002upc.5 AB014509 NM_205842 "CCDS2287|CCDS2288" Q9Y2A7 "10673335|12181570|9344857" MGI:1355333 RGD:61939 NCKAP1 604891 +HGNC:4862 NCKAP1L NCK associated protein 1 like protein-coding gene gene with protein product Approved 12q13.1 12q13.1 HEM1 hematopoietic protein 1 1993-01-27 2005-10-11 2016-01-15 2016-01-15 3071 ENSG00000123338 OTTHUMG00000169843 uc001sgc.5 AI924363 NM_005337 "CCDS31813|CCDS53799" P55160 1932118 MGI:1926063 RGD:1312032 NCKAP1L 141180 +HGNC:29847 NCKAP5 NCK associated protein 5 protein-coding gene gene with protein product Approved 2q21.2 02q21.2 "NAP5|ERIH1|ERIH2" peripheral clock protein 2009-08-14 2016-01-15 2016-01-15 344148 ENSG00000176771 OTTHUMG00000153573 uc002ttp.3 AB005217 NM_207481 "CCDS46417|CCDS46418" O14513 9344857 MGI:2686394 RGD:1564507 NCKAP5 608789 +HGNC:41497 NCKAP5-IT1 NCKAP5 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q21.2 02q21.2 NCKAP5 intronic transcript 1 (non-protein coding) 2011-05-31 2015-02-25 2015-02-25 100874346 ENSG00000232474 OTTHUMG00000153666 uc061nyc.1 +HGNC:29321 NCKAP5L NCK associated protein 5 like protein-coding gene gene with protein product Approved 12q13.12 12q13.12 KIAA1602 KIAA1602 2006-01-20 2009-08-14 2016-01-15 2016-01-15 57701 ENSG00000167566 OTTHUMG00000156969 uc009zlk.2 AB046822 XM_035497 CCDS41781 Q9HCH0 MGI:3609653 RGD:1561571 NCKAP5L 615104 +HGNC:15486 NCKIPSD NCK interacting protein with SH3 domain protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "AF3P21|SPIN90|ORF1|WISH|WASLBP|DIP1" "dia interacting protein|diaphanous protein interacting protein|SH3 protein interacting with Nck, 90 kDa" 2004-02-26 2016-10-05 51517 ENSG00000213672 OTTHUMG00000133542 uc003cun.5 AF178432 NM_016453 "CCDS2776|CCDS46827" Q9NZQ3 "10648423|10619843" MGI:1931834 RGD:1311323 NCKIPSD 606671 +HGNC:7667 NCL nucleolin protein-coding gene gene with protein product Approved 2q37.1 02q37.1 C23 "RNA binding motif containing|DNA helicases" "725|1167" 1991-01-15 2014-11-19 4691 ENSG00000115053 OTTHUMG00000153866 uc002vru.4 NM_005381 CCDS33397 P19338 "2394707|3409881" MGI:97286 RGD:3153 NCL 164035 +HGNC:26923 NCLN nicalin protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "NICALIN|NET59" nicastrin-like protein nicalin homolog (zebrafish) 2004-11-26 2010-08-13 2014-11-19 56926 ENSG00000125912 OTTHUMG00000180687 uc002lxi.4 BC025926 NM_020170 CCDS32869 Q969V3 11230166 MGI:1926081 RGD:1309355 NCLN 609156 M28.978 +HGNC:35472 NCLP1 nucleolin pseudogene 1 pseudogene pseudogene Approved 9q34.3 09q34.3 2009-03-03 2012-10-16 100302751 ENSG00000213212 OTTHUMG00000020939 NG_012793 PGOHUM00000263228 +HGNC:35473 NCLP2 nucleolin pseudogene 2 pseudogene pseudogene Approved Xq26.3 Xq26.3 bA85L21.1 2009-03-03 2014-11-19 100379142 ENSG00000234228 OTTHUMG00000022467 NG_016573 PGOHUM00000241553 +HGNC:29332 NCMAP non-compact myelin associated protein protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "FLJ42528|MP11" myelin protein of 11 kDa C1orf130 chromosome 1 open reading frame 130 2005-06-30 2012-07-31 2015-11-18 2015-11-18 400746 ENSG00000184454 OTTHUMG00000003317 uc001bjk.3 AK124519 NM_001010980 CCDS30632 Q5T1S8 18650334 MGI:2444888 RGD:1587554 +HGNC:7668 NCOA1 nuclear receptor coactivator 1 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "SRC1|F-SRC-1|NCoA-1|KAT13A|RIP160|bHLHe74" "Basic helix-loop-helix proteins|Lysine acetyltransferases" "420|486" 1999-12-17 2016-10-05 8648 ENSG00000084676 OTTHUMG00000125523 uc002rfk.4 U40396 NM_147223 "CCDS1712|CCDS1713|CCDS42660" Q15788 "7481822|9575154" MGI:1276523 RGD:1309046 NCOA1 602691 objectId:2693 +HGNC:7669 NCOA2 nuclear receptor coactivator 2 protein-coding gene gene with protein product Approved 8q13.3 08q13.3 "TIF2|GRIP1|NCoA-2|KAT13C|bHLHe75" "Basic helix-loop-helix proteins|Lysine acetyltransferases" "420|486" 1999-12-17 2011-07-01 10499 ENSG00000140396 OTTHUMG00000164671 uc003xyn.2 X97674 NM_001321703 CCDS47872 Q15596 "9111344|8670870" MGI:1276533 RGD:620108 NCOA2 601993 objectId:2694 +HGNC:7670 NCOA3 nuclear receptor coactivator 3 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "RAC3|AIB1|ACTR|p/CIP|TRAM-1|CAGH16|TNRC16|KAT13B|bHLHe42|SRC-3|SRC3" "receptor-associated coactivator 3|thyroid hormone receptor activator molecule 1" "Basic helix-loop-helix proteins|Lysine acetyltransferases|Trinucleotide repeat containing" "420|486|775" 1999-12-17 2016-10-05 8202 ENSG00000124151 OTTHUMG00000033061 uc002xtk.4 AF012108 NM_006534 "CCDS13406|CCDS13407|CCDS54472" Q9Y6Q9 "9252329|9346901" MGI:1276535 RGD:620109 NCOA3 601937 objectId:2695 +HGNC:7671 NCOA4 nuclear receptor coactivator 4 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "ARA70|RFG|ELE1|PTC3|DKFZp762E1112" RET-activating gene ELE1 1999-12-17 2016-10-05 8031 ENSG00000266412 OTTHUMG00000188314 uc009xon.4 L49399 NM_005437 "CCDS73092|CCDS73093|CCDS73094" Q13772 "8290261|8643607|24695223" MGI:1350932 RGD:1563014 NCOA4 601984 311587 +HGNC:20022 NCOA4P1 nuclear receptor coactivator 4 pseudogene 1 pseudogene pseudogene Approved 14q23.3 14q23.3 NCOA4P nuclear receptor coactivator 4 pseudogene 2003-01-13 2010-02-26 2010-02-26 2014-11-19 326605 NG_002594 PGOHUM00000247833 +HGNC:15909 NCOA5 nuclear receptor coactivator 5 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "bA465L10.6|CIA" coactivator independent of AF-2 2001-06-21 2015-02-02 57727 ENSG00000124160 OTTHUMG00000032639 uc002xre.4 NM_020967 CCDS13392 Q9HCD5 "11780052|11113208" MGI:2385165 RGD:1307702 NCOA5 616825 +HGNC:15936 NCOA6 nuclear receptor coactivator 6 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "KIAA0181|RAP250|ASC2|AIB3|PRIP|TRBP|NRC" "nuclear receptor coactivator RAP250|activating signal cointegrator-2|peroxisome proliferator-activated receptor interacting protein" 2001-12-19 2016-10-05 23054 ENSG00000198646 OTTHUMG00000032311 uc002xaw.4 AF128458 NM_014071 "CCDS13241|CCDS74720" Q14686 "8724849|8263591" MGI:1929915 RGD:620111 NCOA6 605299 +HGNC:21081 NCOA7 nuclear receptor coactivator 7 protein-coding gene gene with protein product Approved 6q22.31-q22.32 06q22.31-q22.32 "ERAP140|dJ187J11.3|TLDC4" TBC/LysM-associated domain containing 4 2003-05-28 2016-10-11 135112 ENSG00000111912 OTTHUMG00000015513 uc003qae.5 AJ420542 XM_059748 "CCDS5132|CCDS56448|CCDS83125" Q8NI08 11971969 MGI:2444847 RGD:1566426 NCOA7 609752 +HGNC:40954 NCOA7-AS1 NCOA7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q22.32 06q22.32 2013-07-01 2014-11-19 104355145 ENSG00000232131 OTTHUMG00000015510 AW444508 NR_126386 23801869 +HGNC:7672 NCOR1 nuclear receptor corepressor 1 protein-coding gene gene with protein product Approved 17p12-p11.2 17p12-p11.2 "N-CoR|hCIT529I10|TRAC1|hN-CoR|KIAA1047|MGC104216|PPP1R109" "thyroid hormone- and retinoic acid receptor-associated corepressor 1|protein phosphatase 1, regulatory subunit 109" nuclear receptor co-repressor 1 "Myb/SANT domain containing|Protein phosphatase 1 regulatory subunits" "532|694" 1999-12-17 2010-06-10 2016-10-11 9611 ENSG00000141027 OTTHUMG00000059309 uc002gpo.4 AF044209 NM_006311 "CCDS11175|CCDS54094|CCDS54095" O75376 "7566114|9724795" MGI:1349717 RGD:3612 NCOR1 600849 +HGNC:16724 NCOR1P1 nuclear receptor corepressor 1 pseudogene 1 pseudogene pseudogene Approved 20p11.1 20p11.1 bB329D4.2 C20orf191 chromosome 20 open reading frame 191 2001-12-07 2011-09-16 2011-09-16 2011-09-16 149934 ENSG00000240108 OTTHUMG00000032145 AL391119 NR_003678 Q9H4R4 PGOHUM00000259634 +HGNC:42997 NCOR1P2 nuclear receptor corepressor 1 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2011-09-16 2011-09-16 729490 ENSG00000265019 OTTHUMG00000179019 NG_006551 PGOHUM00000259210 +HGNC:42996 NCOR1P3 nuclear receptor corepressor 1 pseudogene 3 pseudogene pseudogene Approved 7p11.2 07p11.2 2011-09-16 2011-09-16 100874183 ENSG00000233601 OTTHUMG00000156081 NG_032541 PGOHUM00000233298 +HGNC:7673 NCOR2 nuclear receptor corepressor 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "SMRT|SMRTE|TRAC-1|CTG26|TNRC14" nuclear receptor co-repressor 2 "Myb/SANT domain containing|Trinucleotide repeat containing" "532|775" 1999-12-17 2010-06-10 2016-10-05 9612 ENSG00000196498 OTTHUMG00000150455 uc058uws.1 U37146 NM_006312 "CCDS41857|CCDS41858|CCDS55892" Q9Y618 "7566127|8813722" MGI:1337080 RGD:1310293 NCOR2 600848 +HGNC:6731 NCR1 natural cytotoxicity triggering receptor 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "NK-p46|NKP46|CD335" LY94 lymphocyte antigen 94 (mouse) homolog (activating NK-receptor; NK-p46) "CD molecules|Immunoglobulin like domain containing" "471|594" 1999-04-09 2002-11-15 2002-11-13 2014-11-19 9437 ENSG00000189430 OTTHUMG00000183212 uc002qib.3 AJ001383 XM_011527528 "CCDS12911|CCDS46181|CCDS46182|CCDS56103" O76036 9730896 MGI:1336212 RGD:621288 NCR1 604530 CD335 +HGNC:6732 NCR2 natural cytotoxicity triggering receptor 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "NK-p44|CD336" LY95 lymphocyte antigen 95 (activating NK-receptor; NK-p44) "CD molecules|V-set domain containing" "471|590" 1999-04-09 2002-11-15 2002-11-13 2015-09-01 9436 ENSG00000096264 OTTHUMG00000014678 uc003oqh.3 AJ225109 XM_017011500 "CCDS4855|CCDS56428|CCDS56429" O95944 10049942 RGD:1307182 NCR2 604531 CD336 +HGNC:19077 NCR3 natural cytotoxicity triggering receptor 3 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "1C7|NKp30|CD337" LY117 lymphocyte antigen 117 "CD molecules|V-set domain containing" "471|590" 2002-08-05 2002-11-15 2002-11-13 2016-10-05 259197 ENSG00000204475 OTTHUMG00000031123 uc003nuv.3 AB055881 XM_006715049 "CCDS34397|CCDS47401|CCDS47402" O14931 "8824804|11782277" MGI:2149332 RGD:727881 NCR3 611550 CD337 +HGNC:42400 NCR3LG1 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "DKFZp686O24166|B7-H6" B7 homolog 6 "Endogenous ligands|C1-set domain containing" "542|591" 2012-04-12 2014-01-30 374383 ENSG00000188211 OTTHUMG00000165913 uc001mmz.5 NM_001202439 CCDS55748 Q68D85 19528259 RGD:1588614 NCR3LG1 613714 +HGNC:31844 NCRNA00055 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-09 +HGNC:31846 NCRNA00056 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-09 +HGNC:31390 NCRNA00090 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-09 +HGNC:31842 NCRNA00091 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-09 +HGNC:1261 NCRNA00098 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-09 +HGNC:31841 NCRNA00104 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-10-09 +HGNC:24095 NCRNA00250 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-08-11 +HGNC:38533 NCRNA00270B entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-06 +HGNC:38001 NCRNA00270 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-07-06 +HGNC:37153 NCRUPAR non-protein coding RNA, upstream of F2R/PAR1 non-coding RNA RNA, long non-coding Approved 5q13.3 05q13.3 "ncR-uPAR|ncRuPAR|NCRNA00193" "noncoding RNA upstream of the PAR-1|non-protein coding RNA 193" Long non-coding RNAs 788 2009-07-29 2014-10-22 100302746 NR_028375 12084570 ncR-uPAR +HGNC:3953 NCS1 neuronal calcium sensor 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 NCS-1 FREQ "frequenin (Drosophila) homolog|frequenin homolog (Drosophila)" EF-hand domain containing 863 2000-06-09 2010-01-27 2010-01-27 2016-07-22 23413 ENSG00000107130 OTTHUMG00000020801 uc004bzi.2 AF186409 NM_014286 "CCDS6932|CCDS78448" P62166 "11092894|26705828" MGI:109166 RGD:68417 NCS1 603315 +HGNC:17091 NCSTN nicastrin protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "KIAA0253|APH2" 2005-02-08 2016-10-12 23385 ENSG00000162736 OTTHUMG00000033110 uc001fvx.4 AF240468 NM_015331 "CCDS1203|CCDS76228" Q92542 "9039502|10993067" MGI:1891700 RGD:631418 LRG_223|http://www.lrg-sequence.org/LRG/LRG_223 NCSTN 605254 268347 +HGNC:39606 NCSTNP1 nicastrin pseudogene 1 pseudogene pseudogene Approved 21q21.3 21q21.3 2011-03-17 2011-03-17 100873743 ENSG00000219592 OTTHUMG00000078705 NG_032328 +HGNC:25525 NDC1 NDC1 transmembrane nucleoporin protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "FLJ10407|NET3" nuclear division cycle 1 homolog (S. cerevisiae) TMEM48 transmembrane protein 48 Nucleoporins 1051 2005-04-22 2013-05-23 2013-05-23 2015-08-25 55706 ENSG00000058804 OTTHUMG00000008073 AL354613 NM_018087 CCDS583 Q9BTX1 "16779818|12958361" MGI:1920037 RGD:1560173 610115 +HGNC:16909 NDC80 NDC80, kinetochore complex component protein-coding gene gene with protein product Approved 18p11.32 18p11.32 "HEC|HEC1|hsNDC80|TID3" KNTC2 "highly expressed in cancer, rich in leucine heptad repeats (yeast)|kinetochore associated 2|NDC80 kinetochore complex component homolog (S. cerevisiae)" 2004-01-15 2007-03-02 2016-05-12 2016-10-05 10403 ENSG00000080986 OTTHUMG00000131483 uc002kli.3 AF017790 NM_006101 CCDS11827 O14777 "9315664|12351790" MGI:1914302 RGD:1310154 NDC80 607272 +HGNC:17619 NDE1 nudE neurodevelopment protein 1 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 "nudE|FLJ20101|NDE" "nudE nuclear distribution gene E homolog 1 (A. nidulans)|nudE nuclear distribution E homolog 1 (A. nidulans)" 2003-04-10 2013-08-06 2014-11-18 54820 ENSG00000072864 OTTHUMG00000129885 uc010uzy.3 AF124431 NM_017668 CCDS10564 Q9NXR1 "10940388|12427674" MGI:1914453 RGD:620038 NDE1 609449 281616 +HGNC:49115 NDE1P1 nudE neurodevelopment protein 1 pseudogene 1 pseudogene pseudogene Approved 1p13.3 01p13.3 2013-09-05 2013-09-05 100422372 NG_027124 PGOHUM00000244831 +HGNC:49116 NDE1P2 nudE neurodevelopment protein 1 pseudogene 2 pseudogene pseudogene Approved 13q13.3 13q13.3 2013-09-05 2013-09-05 106480247 ENSG00000271337 OTTHUMG00000184715 NG_045609 PGOHUM00000248363 +HGNC:17620 NDEL1 nudE neurodevelopment protein 1 like 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "NUDEL|MITAP1|NDE1L1|NDE2" "nudE nuclear distribution gene E homolog (A. nidulans)-like 1|nudE nuclear distribution E homolog (A. nidulans)-like 1" 2003-04-10 2003-04-16 2016-01-06 2016-01-06 81565 ENSG00000166579 OTTHUMG00000108193 uc060bbs.1 AF182078 NM_030808 "CCDS11143|CCDS32564|CCDS82070" Q9GZM8 "11163260|11163259" MGI:1932915 RGD:621235 NDEL1 607538 +HGNC:17592 NDFIP1 Nedd4 family interacting protein 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "N4WBP5|MGC10924" 2003-02-07 2014-11-19 80762 ENSG00000131507 OTTHUMG00000129659 uc003lmi.5 BC004317 NM_030571 CCDS4273 Q9BT67 "11042109|11748237" MGI:1929601 RGD:1310053 NDFIP1 612050 +HGNC:49866 NDFIP1P1 Nedd4 family interacting protein 1 pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 2014-03-18 2014-03-18 100420792 ENSG00000255892 OTTHUMG00000169000 NG_023988 PGOHUM00000239364 +HGNC:18537 NDFIP2 Nedd4 family interacting protein 2 protein-coding gene gene with protein product Approved 13q31.1 13q31.1 "KIAA1165|N4wbp5a" 2003-02-07 2016-10-05 54602 ENSG00000102471 OTTHUMG00000017136 uc001vlf.4 AB032991 XM_006719840 CCDS31998 Q9NV92 "10574461|12050153" MGI:1923523 RGD:1309716 NDFIP2 610041 +HGNC:40844 NDFIP2-AS1 NDFIP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 NDFIP2 antisense RNA 1 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874208 ENSG00000232132 OTTHUMG00000017134 uc031qmm.1 NR_046685 +HGNC:7675 NDN necdin, MAGE family member protein-coding gene gene with protein product Approved 15q11.2 15q11.2 "HsT16328|PWCR" Prader-Willi syndrome chromosome region "necdin homolog (mouse)|necdin, melanoma antigen (MAGE) family member" MAGE family 1136 1997-10-13 2015-11-13 2016-10-12 4692 ENSG00000182636 OTTHUMG00000129161 uc001ywk.4 U35139 NM_002487 CCDS10014 Q99608 9302265 MGI:97290 RGD:1310526 LRG_1047|http://www.lrg-sequence.org/LRG/LRG_1047 NDN 602117 123710 +HGNC:26256 NDNF neuron derived neurotrophic factor protein-coding gene gene with protein product Approved 4q27 04q27 FLJ23191 C4orf31 chromosome 4 open reading frame 31 2006-07-17 2011-07-05 2016-06-14 2016-06-14 79625 ENSG00000173376 OTTHUMG00000132973 uc003idq.2 BC019351 NM_024574 CCDS3717 Q8TB73 "12975309|20969804" MGI:1915419 RGD:1311080 NDNF 616506 +HGNC:29838 NDOR1 NADPH dependent diflavin oxidoreductase 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "NR1|bA350O14.9" NADPH dependent FMN and FAD containing oxidoreductase 2004-05-17 2015-08-25 27158 ENSG00000188566 OTTHUMG00000020986 uc004clw.4 BC015735 NM_014434 "CCDS7036|CCDS48061|CCDS48062|CCDS48063" Q9UHB4 "10625700|12631275" MGI:1926047 RGD:1308479 NDOR1 606073 +HGNC:7678 NDP NDP, norrin cystine knot growth factor protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 norrin EVR2 "exudative vitreoretinopathy 2 (X-linked)|Norrie disease (pseudoglioma)" Endogenous ligands 542 2001-06-22 2016-05-20 2016-10-05 4693 ENSG00000124479 OTTHUMG00000021391 uc004dga.5 X65882 NM_000266 CCDS14262 Q00604 8252044 MGI:102570 RGD:1563968 Mutations of the Norrie Disease Gene|http://www.retina-international.org/files/sci-news/ndgmut.htm NDP 300658 123713 +HGNC:40395 NDP-AS1 NDP antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp11.3 Xp11.3 NDP antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873919 ENSG00000236276 OTTHUMG00000021390 uc064yrp.1 +HGNC:7679 NDRG1 N-myc downstream regulated 1 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 "DRG1|RTP|TDD5|NDR1" CAP43 1998-12-23 2008-09-12 2016-10-12 10397 ENSG00000104419 OTTHUMG00000164441 uc003yuh.3 X92845 NM_006096 "CCDS34945|CCDS59112|CCDS59113" Q92597 "9251681|8939898|18455888" MGI:1341799 RGD:1307303 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_258|http://www.lrg-sequence.org/LRG/LRG_258" NDRG1 605262 123716 S33.988 +HGNC:14460 NDRG2 NDRG family member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "KIAA1248|SYLD" 2001-01-24 2015-09-01 57447 ENSG00000165795 OTTHUMG00000029619 uc001vzd.3 AB033074 XM_017021480 "CCDS9564|CCDS9565|CCDS61384|CCDS61386|CCDS73613" Q9UN36 10831399 MGI:1352498 RGD:621874 NDRG2 605272 S33.989 +HGNC:14462 NDRG3 NDRG family member 3 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 2001-01-24 2016-10-05 57446 ENSG00000101079 OTTHUMG00000032398 uc002xfw.4 AL031662 XM_011528925 "CCDS13284|CCDS13285" Q9UGV2 "10831399|17998568" MGI:1352499 RGD:1359424 NDRG3 605273 S33.987 +HGNC:14466 NDRG4 NDRG family member 4 protein-coding gene gene with protein product Approved 16q21 16q21 "KIAA1180|SMAP-8" 2001-01-25 2015-09-01 65009 ENSG00000103034 OTTHUMG00000133485 uc059vaz.1 AB044947 XM_011523290 "CCDS10797|CCDS45500|CCDS55999|CCDS58465|CCDS58466|CCDS58467" Q9ULP0 "11352569|16408304" MGI:2384590 RGD:621593 NDRG4 614463 S33.986 +HGNC:7680 NDST1 N-deacetylase and N-sulfotransferase 1 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 NST1 "[Heparan sulfate]-glucosamine N-sulfotransferase 1|N-Deacetylase-N-sulfotransferase 1|heparan sulfate/heparin GlcNAc N-deacetylase/GlcN N-sulfotransferase 1" HSST N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1 Sulfotransferases, membrane bound 763 1995-08-10 2016-07-05 2016-07-05 3340 ENSG00000070614 OTTHUMG00000163572 uc003lsk.4 U18918 NM_001543 "CCDS34277|CCDS75358" P52848 "7601448|9230113" MGI:104719 RGD:69303 NDST1 600853 414701 2.8.2.8 +HGNC:7681 NDST2 N-deacetylase and N-sulfotransferase 2 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "NST2|HSST2" N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2 Sulfotransferases, membrane bound 763 1998-10-09 2016-07-05 2016-10-05 8509 ENSG00000166507 OTTHUMG00000018489 uc001jvk.3 U36601 NM_003635 "CCDS7335|CCDS81476" P52849 9601056 MGI:97040 RGD:1304700 NDST2 603268 2.8.2.8 +HGNC:7682 NDST3 N-deacetylase and N-sulfotransferase 3 protein-coding gene gene with protein product Approved 4q26 04q26 HSST3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 Sulfotransferases, membrane bound 763 1999-03-22 2016-07-05 2016-07-05 9348 ENSG00000164100 OTTHUMG00000132959 uc003ibx.4 AF074924 NM_004784 CCDS3708 O95803 9915799 MGI:1932544 RGD:1310960 NDST3 603950 2.8.2.8 +HGNC:20779 NDST4 N-deacetylase and N-sulfotransferase 4 protein-coding gene gene with protein product Approved 4q26 04q26 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4 Sulfotransferases, membrane bound 763 2004-01-12 2016-07-05 2016-07-05 64579 ENSG00000138653 OTTHUMG00000132916 uc003ibu.4 AB036429 NM_022569 CCDS3706 Q9H3R1 11087757 MGI:1932545 RGD:1306531 NDST4 615039 2.8.2.8 +HGNC:7683 NDUFA1 NADH:ubiquinone oxidoreductase subunit A1 protein-coding gene gene with protein product Approved Xq24 Xq24 "MWFE|CI-MWFE" "NADH:ubiquinone oxidoreductase (complex 1)|type I dehydrogenase|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD, MWFE)|complex I MWFE subunit" "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1 (7.5kD, MWFE)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1996-08-16 2015-11-20 2015-11-20 4694 ENSG00000125356 OTTHUMG00000022287 uc004esc.5 NM_004541 CCDS14590 O15239 8938439 MGI:1929511 RGD:1560955 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NDUFA1 NDUFA1 300078 139187 +HGNC:7685 NDUFA2 NADH:ubiquinone oxidoreductase subunit A2 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 B8 complex I B8 subunit "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 (8kD, B8)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2, 8kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1996-08-30 2015-11-20 2016-10-05 4695 ENSG00000131495 OTTHUMG00000129505 uc003lgp.4 AF047185 NM_002488 "CCDS4234|CCDS54911" O43678 "9425316|9763676" MGI:1343103 RGD:1309997 NDUFA2 602137 252455 +HGNC:7686 NDUFA3 NADH:ubiquinone oxidoreductase subunit A3 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 B9 complex I B9 subunit "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 (9kD, B9)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1996-08-30 2015-11-20 2015-11-20 4696 ENSG00000170906 OTTHUMG00000064972 uc061cmg.1 AF044955 NM_004542 CCDS12877 O95167 9878551 MGI:1913341 RGD:1588687 NDUFA3 603832 +HGNC:45043 NDUFA3P1 NADH:ubiquinone oxidoreductase subunit A3 pseudogene 1 pseudogene pseudogene Approved 19q13.31 19q13.31 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 pseudogene 1 2013-01-25 2015-11-20 2015-11-20 100131388 ENSG00000267590 OTTHUMG00000182355 NG_030059 PGOHUM00000234718 +HGNC:45051 NDUFA3P2 NADH:ubiquinone oxidoreductase subunit A3 pseudogene 2 pseudogene pseudogene Approved 11q13.2 11q13.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 pseudogene 2 2013-02-04 2015-11-20 2015-11-20 106479051 ENSG00000254856 OTTHUMG00000167668 NG_044507 PGOHUM00000242346 +HGNC:45052 NDUFA3P3 NADH:ubiquinone oxidoreductase subunit A3 pseudogene 3 pseudogene pseudogene Approved 1q42.12 01q42.12 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 pseudogene 3 2013-02-04 2015-11-20 2015-11-20 644482 ENSG00000213032 OTTHUMG00000037505 NG_030212 PGOHUM00000245223 +HGNC:45053 NDUFA3P4 NADH:ubiquinone oxidoreductase subunit A3 pseudogene 4 pseudogene pseudogene Approved 15q26.1 15q26.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 pseudogene 4 2013-02-04 2015-11-20 2015-11-20 106480806 ENSG00000259262 OTTHUMG00000172360 NG_044209 PGOHUM00000247270 +HGNC:45054 NDUFA3P5 NADH:ubiquinone oxidoreductase subunit A3 pseudogene 5 pseudogene pseudogene Approved 13q32.1 13q32.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 pseudogene 5 2013-02-04 2015-11-20 2015-11-20 PGOHUM00000248663 +HGNC:45055 NDUFA3P6 NADH:ubiquinone oxidoreductase subunit A3 pseudogene 6 pseudogene pseudogene Approved 16p11.2 16p11.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3 pseudogene 6 2013-02-04 2015-11-20 2015-11-20 106479052 ENSG00000262366 OTTHUMG00000177742 NG_044517 PGOHUM00000249056 +HGNC:7687 NDUFA4 NDUFA4, mitochondrial complex associated protein-coding gene gene with protein product Approved 7p21.3 07p21.3 "MLRQ|CI-9k" "complex I 9kDa subunit|NADH-ubiquinone oxidoreductase MLRQ subunit" "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4 (9kD, MLRQ)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa" 1996-08-30 2014-07-30 2016-07-18 4697 ENSG00000189043 OTTHUMG00000023880 uc003srx.3 U94586 NM_002489 CCDS5357 O00483 "9352085|22902835" MGI:107686 RGD:1584719 NDUFA4 603833 396654 +HGNC:29836 NDUFA4L2 NDUFA4, mitochondrial complex associated like 2 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "NUOMS|FLJ26118" NADH-ubiquinone oxidoreductase MLRQ subunit homolog NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2 2006-03-30 2016-06-22 2016-06-22 56901 ENSG00000185633 OTTHUMG00000171275 uc001sno.4 BC011910 NM_020142 CCDS8935 Q9NRX3 MGI:3039567 RGD:2324558 NDUFA4L2 +HGNC:29835 NDUFA4P1 NDUFA4, mitochondrial complex associated pseudogene 1 pseudogene pseudogene Approved 1p13.3 01p13.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa, pseudogene 1 2006-03-30 2016-06-22 2016-06-22 360165 AF206638 NG_002998 +HGNC:31362 NDUFA4P2 NDUFA4, mitochondrial complex associated pseudogene 2 pseudogene pseudogene Approved 3q13.11 03q13.11 bcm1723 NDUFA4L "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9kDa, pseudogene 2" 2004-03-12 2010-05-07 2016-06-22 2016-06-22 100287880 ENSG00000236691 OTTHUMG00000159095 NG_022262 PGOHUM00000238120 +HGNC:7688 NDUFA5 NADH:ubiquinone oxidoreductase subunit A5 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 "B13|NUFM|CI-13KD-B|UQOR13|CI-13kB" "complex I 13kDa subunit B|ubiquinone reductase|type I dehydrogenase|NADH-ubiquinone oxidoreductase 13 kDa-B subunit" "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 (13kD, B13)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1996-08-30 2015-11-20 2016-10-05 4698 ENSG00000128609 OTTHUMG00000157348 uc033afk.2 NM_005000 "CCDS5788|CCDS64760|CCDS75655|CCDS75656" Q16718 "9763677|9021153" MGI:1915452 RGD:3155 NDUFA5 601677 +HGNC:7689 NDUFA5P1 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 1 pseudogene pseudogene Approved 11p15.4 11p15.4 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, pseudogene 1|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 1" 1997-04-25 2015-11-20 2015-11-20 4699 ENSG00000232390 OTTHUMG00000011713 NG_031920 9021153 PGOHUM00000242554 +HGNC:48855 NDUFA5P2 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 2 pseudogene pseudogene Approved 8q22.3 08q22.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 2 2013-06-19 2015-11-20 2015-11-20 102724035 ENSG00000253454 OTTHUMG00000164813 NG_034088 PGOHUM00000249768 +HGNC:48845 NDUFA5P3 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 3 pseudogene pseudogene Approved 9p22.1 09p22.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 3 2013-06-19 2015-11-20 2015-11-20 100288035 ENSG00000234853 OTTHUMG00000019641 NG_021609 PGOHUM00000235980 +HGNC:48846 NDUFA5P4 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 4 pseudogene pseudogene Approved 9p13.3 09p13.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 4 2013-06-19 2015-11-20 2015-11-20 100128136 ENSG00000233659 OTTHUMG00000019881 NG_030085 PGOHUM00000236025 +HGNC:48847 NDUFA5P5 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 5 pseudogene pseudogene Approved 3p11.1 03p11.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 5 2013-06-19 2015-11-20 2015-11-20 100130327 ENSG00000242365 OTTHUMG00000159041 NG_030112 PGOHUM00000238095 +HGNC:48848 NDUFA5P6 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 6 pseudogene pseudogene Approved 12q24.32 12q24.32 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 6 2013-06-19 2015-11-20 2015-11-20 100288339 ENSG00000256310 OTTHUMG00000168472 NG_030134 PGOHUM00000239954 +HGNC:48849 NDUFA5P7 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 7 pseudogene pseudogene Approved Xq21.2 Xq21.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 7 2013-06-19 2015-11-20 2015-11-20 106481784 ENSG00000234039 OTTHUMG00000021938 NG_043869 PGOHUM00000241422 +HGNC:48850 NDUFA5P8 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 8 pseudogene pseudogene Approved 11p15.4 11p15.4 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 8 2013-06-19 2015-11-20 2015-11-20 103091863 ENSG00000236987 OTTHUMG00000011711 NG_034090 PGOHUM00000242553 +HGNC:48851 NDUFA5P9 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 9 pseudogene pseudogene Approved 6q14.3 06q14.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 9 2013-06-19 2015-11-20 2015-11-20 100289579 ENSG00000220831 OTTHUMG00000015150 NG_030181 PGOHUM00000243277 +HGNC:48852 NDUFA5P10 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 10 pseudogene pseudogene Approved 1p13.3 01p13.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 10 2013-06-19 2015-11-20 2015-11-20 102724853 ENSG00000224927 OTTHUMG00000011634 NG_034089 PGOHUM00000244139 +HGNC:48853 NDUFA5P11 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 11 pseudogene pseudogene Approved 16q12.1 16q12.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 11 2013-06-19 2015-11-20 2015-11-20 102724866 ENSG00000259918 OTTHUMG00000175533 NG_034087 PGOHUM00000248882 +HGNC:48854 NDUFA5P12 NADH:ubiquinone oxidoreductase subunit A5 pseudogene 12 pseudogene pseudogene Approved 8q11.1 08q11.1 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 pseudogene 12 2013-06-19 2015-11-20 2015-11-20 100288013 ENSG00000248531 OTTHUMG00000160522 NG_030254 PGOHUM00000249650 +HGNC:7690 NDUFA6 NADH:ubiquinone oxidoreductase subunit A6 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "B14|LYRM6|CI-B14|NADHB14" complex I B14 subunit "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (14kD, B14)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6, 14kDa" "LYR motif containing|NADH:ubiquinone oxidoreductase supernumerary subunits" "635|1150" 1996-08-30 2015-11-20 2015-11-20 4700 ENSG00000184983 OTTHUMG00000151287 uc062etx.1 AF047182 NM_002490 CCDS33656 P56556 "9763676|9425316" MGI:1914380 RGD:1309818 NDUFA6 602138 +HGNC:45273 NDUFA6-AS1 NDUFA6 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 22q13.2 22q13.2 2013-03-18 2013-03-18 2013-03-18 100132273 ENSG00000237037 OTTHUMG00000150917 uc003bcd.3 BC039542 NR_034118 +HGNC:7691 NDUFA7 NADH:ubiquinone oxidoreductase subunit A7 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 B14.5a complex I B14.5a subunit "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (14.5kD, B14.5a)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7, 14.5kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1996-11-15 2015-11-20 2015-11-20 4701 ENSG00000267855 OTTHUMG00000182459 uc002mjm.3 AF050637 NM_005001 CCDS42492 O95182 9763676 MGI:1913666 RGD:1304597 NDUFA7 602139 +HGNC:7692 NDUFA8 NADH:ubiquinone oxidoreductase subunit A8 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "PGIV|MGC793" complex I PGIV subunit "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8 (19kD, PGIV)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8, 19kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-17 2015-11-20 2015-11-20 4702 ENSG00000119421 OTTHUMG00000020598 uc004blv.4 AF044953 NM_014222 CCDS6835 P51970 9763677 MGI:1915625 RGD:1306283 NDUFA8 603359 +HGNC:52264 NDUFA8P1 NADH:ubiquinone oxidoreductase subunit A8 pseudogene 1 pseudogene pseudogene Approved 10q22.2 10q22.2 2015-11-20 2015-11-20 107075207 ENSG00000271710 OTTHUMG00000184746 NG_046539 PGOHUM00000289907 +HGNC:7693 NDUFA9 NADH:ubiquinone oxidoreductase subunit A9 protein-coding gene gene with protein product Approved 12p13.3 12p13.3 "SDR22E1|CI-39k" "short chain dehydrogenase/reductase family 22E, member 1|complex I 39kDa subunit" NDUFS2L "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9 (39kD)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa" "Short chain dehydrogenase/reductase superfamily|NADH:ubiquinone oxidoreductase supernumerary subunits" "743|1150" 1997-12-17 2015-11-20 2016-07-21 4704 ENSG00000139180 OTTHUMG00000168224 uc001qnc.4 AF050641 NM_005002 CCDS8532 Q16795 "8486360|19027726" MGI:1913358 RGD:1307307 NDUFA9 603834 291742 +HGNC:19252 NDUFA9P1 NADH:ubiquinone oxidoreductase subunit A9 pseudogene 1 pseudogene pseudogene Approved 22q12.3 22q12.3 dJ106I20.2 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, pseudogene 1 2002-09-18 2015-11-20 2015-11-20 266625 ENSG00000237406 OTTHUMG00000150636 AF196991 NG_002366 PGOHUM00000246321 +HGNC:7684 NDUFA10 NADH:ubiquinone oxidoreductase subunit A10 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 CI-42k complex I 42kDa subunit "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10 (42kD)|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 10, 42kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-17 2015-11-20 2015-11-20 4705 ENSG00000130414 OTTHUMG00000133350 uc002vyn.3 AF087661 NM_004544 CCDS2531 O95299 9878551 MGI:1914523 RGD:727968 NDUFA10 603835 265457 +HGNC:20371 NDUFA11 NADH:ubiquinone oxidoreductase subunit A11 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 B14.7 complex I B14.7 subunit NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11, 14.7kDa NADH:ubiquinone oxidoreductase supernumerary subunits 1150 2003-12-03 2015-11-20 2015-11-20 126328 ENSG00000174886 OTTHUMG00000180617 uc002mdq.3 AJ539081 NM_175614 "CCDS12155|CCDS54203" Q86Y39 12381726 MGI:1917125 RGD:1303292 NDUFA11 612638 183907 +HGNC:23987 NDUFA12 NADH:ubiquinone oxidoreductase subunit A12 protein-coding gene gene with protein product Approved 12q22 12q22 "DAP13|B17.2" complex I B17.2 subunit NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 NADH:ubiquinone oxidoreductase supernumerary subunits 1150 2005-07-19 2015-11-20 2015-11-20 55967 ENSG00000184752 OTTHUMG00000170098 uc001tdl.5 BC005936 NM_018838 "CCDS9050|CCDS58263" Q9UI09 "10830904|9827566" MGI:1913664 RGD:1311462 NDUFA12 614530 437867 +HGNC:39419 NDUFA12P1 NADH:ubiquinone oxidoreductase subunit A12 pseudogene 1 pseudogene pseudogene Approved 13q32.3 13q32.3 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 pseudogene 1 2010-12-03 2015-11-20 2015-11-20 100527945 ENSG00000225999 OTTHUMG00000017281 NG_027984 PGOHUM00000248481 +HGNC:17194 NDUFA13 NADH:ubiquinone oxidoreductase subunit A13 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "CGI-39|CDA016|GRIM-19|GRIM19|B16.6" complex I B16.6 subunit NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13 NADH:ubiquinone oxidoreductase supernumerary subunits 1150 2005-07-20 2015-11-20 2016-04-25 51079 ENSG00000186010 OTTHUMG00000162211 uc021uqu.2 AF261134 NM_015965 CCDS12404 Q9P0J0 "12837546|10924506|15367666" MGI:1914434 RGD:1565358 NDUFA13 609435 377743 +HGNC:7694 NDUFAB1 NADH:ubiquinone oxidoreductase subunit AB1 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "SDAP|FASN2A|ACP" "acyl carrier protein, mitochondrial|complex I SDAP subunit" "NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (8kD, SDAP)|NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-17 2015-11-20 2016-10-05 4706 ENSG00000004779 OTTHUMG00000096985 uc002dlw.4 AF087660 NM_005003 CCDS10614 O14561 "9763677|9878551" MGI:1917566 RGD:1305619 NDUFAB1 603836 +HGNC:52265 NDUFAB1P1 NADH:ubiquinone oxidoreductase subunit AB1 pseudogene 1 pseudogene pseudogene Approved 6q13 06q13 2015-11-20 2015-11-20 107075303 ENSG00000217767 OTTHUMG00000014995 PGOHUM00000301841 +HGNC:18828 NDUFAF1 NADH:ubiquinone oxidoreductase complex assembly factor 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "CIA30|CGI-65" NADH dehydrogenase (ubiquinone) complex I, assembly factor 1 Mitochondrial respiratory chain complex assembly factors 645 2004-02-02 2015-12-16 2016-10-05 51103 ENSG00000137806 OTTHUMG00000130340 uc001znx.4 AF151823 NM_016013 CCDS10075 Q9Y375 "11935339|10810093" MGI:1916952 RGD:1306202 NDUFAF1 606934 289535 +HGNC:28086 NDUFAF2 NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding gene gene with protein product Approved 5q12.1 05q12.1 "B17.2L|MMTN|mimitin" Myc-induced mitochondrial protein NDUFA12L "NDUFA12-like|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2|NADH dehydrogenase (ubiquinone) complex I, assembly factor 2" Mitochondrial respiratory chain complex assembly factors 645 2006-07-31 2008-02-15 2015-12-16 2015-12-16 91942 ENSG00000164182 OTTHUMG00000131221 uc003jsp.4 AB183433 NM_174889 CCDS3979 Q8N183 "15774466|16200211|17383918" MGI:1922847 RGD:1560158 NDUFAF2 609653 123723 +HGNC:29918 NDUFAF3 NADH:ubiquinone oxidoreductase complex assembly factor 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "MGC10527|DKFZP564J0123|E3-3|2P1" C3orf60 "chromosome 3 open reading frame 60|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3|NADH dehydrogenase (ubiquinone) complex I, assembly factor 3" Mitochondrial respiratory chain complex assembly factors 645 2006-02-07 2009-03-18 2015-12-16 2015-12-16 25915 ENSG00000178057 OTTHUMG00000156773 uc003cvq.4 NM_199069 "CCDS2784|CCDS2785" Q9BU61 "12653254|9349717" MGI:1913956 RGD:708545 NDUFAF3 612911 201531 +HGNC:21034 NDUFAF4 NADH:ubiquinone oxidoreductase complex assembly factor 4 protein-coding gene gene with protein product Approved 6q16.1 06q16.1 "HSPC125|bA22L21.1|My013|HRPAP20" C6orf66 "chromosome 6 open reading frame 66|NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4|NADH dehydrogenase (ubiquinone) complex I, assembly factor 4" Mitochondrial respiratory chain complex assembly factors 645 2003-05-07 2009-03-18 2015-12-16 2016-10-05 29078 ENSG00000123545 OTTHUMG00000015246 uc003pow.4 AF161474 NM_014165 CCDS5037 Q9P032 "11042152|18179882" MGI:1915743 RGD:735162 NDUFAF4 611776 166690 +HGNC:44194 NDUFAF4P1 NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 1 pseudogene pseudogene Approved 15q21.1 15q21.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 1 2012-06-30 2015-12-16 2015-12-16 100306975 ENSG00000259467 OTTHUMG00000172326 NR_036507 PGOHUM00000247112 +HGNC:44541 NDUFAF4P2 NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 2 pseudogene pseudogene Approved 7q21.3 07q21.3 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 2 2012-11-15 2015-12-16 2015-12-16 402676 ENSG00000213483 OTTHUMG00000155771 NG_008702 PGOHUM00000233471 +HGNC:44542 NDUFAF4P3 NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 3 pseudogene pseudogene Approved 3p22.2 03p22.2 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 3 2012-11-15 2015-12-16 2015-12-16 100422532 ENSG00000236411 OTTHUMG00000155922 NG_025565 PGOHUM00000237588 +HGNC:44543 NDUFAF4P4 NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 4 pseudogene pseudogene Approved 1q25.1 01q25.1 NADH dehydrogenase (ubiquinone) complex I, assembly factor 4 pseudogene 4 2012-11-15 2015-12-16 2015-12-16 100128889 ENSG00000231378 OTTHUMG00000034937 NG_030201 PGOHUM00000244344 +HGNC:15899 NDUFAF5 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 dJ842G6.1 C20orf7 "chromosome 20 open reading frame 7|NADH dehydrogenase (ubiquinone) complex I, assembly factor 5" Mitochondrial respiratory chain complex assembly factors 645 2001-06-21 2012-05-08 2015-12-16 2015-12-16 79133 ENSG00000101247 OTTHUMG00000031909 uc002wom.4 NM_001039375 "CCDS13118|CCDS33441" Q5TEU4 "18940309|21607760" MGI:1916737 RGD:1309829 612360 169395 +HGNC:28625 NDUFAF6 NADH:ubiquinone oxidoreductase complex assembly factor 6 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 MGC40214 C8orf38 "chromosome 8 open reading frame 38|NADH dehydrogenase (ubiquinone) complex I, assembly factor 6" Mitochondrial respiratory chain complex assembly factors 645 2005-07-27 2012-05-08 2015-12-16 2015-12-16 137682 ENSG00000156170 OTTHUMG00000150173 uc003yhj.4 BC028166 NM_152416 "CCDS6266|CCDS83307" Q330K2 "22019594|23509070" MGI:1924197 RGD:1309085 612392 169399 +HGNC:28816 NDUFAF7 NADH:ubiquinone oxidoreductase complex assembly factor 7 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "PRO1853|MidA" mitochondrial dysfunction protein A homolog C2orf56 "chromosome 2 open reading frame 56|NADH dehydrogenase (ubiquinone) complex I, assembly factor 7" Mitochondrial respiratory chain complex assembly factors 645 2007-05-31 2012-10-12 2015-12-16 2015-12-16 55471 ENSG00000003509 OTTHUMG00000128468 uc002rqa.6 NM_144736 "CCDS1788|CCDS42673" Q7L592 MGI:1920944 RGD:1311578 615898 +HGNC:33551 NDUFAF8 NADH:ubiquinone oxidoreductase complex assembly factor 8 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 C17orf89 chromosome 17 open reading frame 89 2007-07-27 2016-08-02 2016-08-02 2016-08-09 284184 ENSG00000224877 OTTHUMG00000177867 uc002jzx.3 BC127837 NM_001086521 CCDS45809 A1L188 "17287340|27499296" MGI:1913676 RGD:1590963 +HGNC:7695 NDUFB1 NADH:ubiquinone oxidoreductase subunit B1 protein-coding gene gene with protein product Approved 14q31.3 14q31.3 "MNLL|CI-MNLL" complex I MNLL subunit "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 (7kD, MNLL)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1996-11-15 2015-11-20 2015-11-20 4707 ENSG00000183648 OTTHUMG00000171180 uc001yaf.4 BC104672 NM_004545 CCDS9901 O75438 9763677 MGI:3780865 RGD:6487218 NDUFB1 603837 +HGNC:30893 NDUFB1P1 NADH:ubiquinone oxidoreductase subunit B1 pseudogene 1 pseudogene pseudogene Approved 3p21.31 03p21.31 bcm3095 NDUFB1P "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 pseudogene|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 pseudogene 1" 2008-01-31 2010-02-26 2015-11-20 2015-11-20 100190952 ENSG00000231884 OTTHUMG00000156836 NG_008709 PGOHUM00000299432 +HGNC:37815 NDUFB1P2 NADH:ubiquinone oxidoreductase subunit B1 pseudogene 2 pseudogene pseudogene Approved 1q41 01q41 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1 pseudogene 2 2010-02-26 2015-11-20 2015-11-20 100380272 ENSG00000234523 OTTHUMG00000037892 NG_016728 PGOHUM00000296780 +HGNC:7697 NDUFB2 NADH:ubiquinone oxidoreductase subunit B2 protein-coding gene gene with protein product Approved 7q34 07q34 "AGGG|CI-AGGG" "NADH-ubiquinone oxidoreductase AGGG subunit|complex I AGGG subunit" "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 (8kD, AGGG)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2, 8kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1996-11-15 2015-11-20 2015-11-20 4708 ENSG00000090266 OTTHUMG00000157424 uc064ipf.1 AF050639 NM_004546 CCDS5862 O95178 "9763677|9878551" MGI:1915448 RGD:1308130 NDUFB2 603838 +HGNC:40396 NDUFB2-AS1 NDUFB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q34 07q34 NDUFB2 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 100134713 ENSG00000240889 OTTHUMG00000157407 uc011krf.1 AK129584 NR_024454 +HGNC:52266 NDUFB2P1 NADH:ubiquinone oxidoreductase subunit B2 pseudogene 2 pseudogene pseudogene Approved 4q32.1 04q32.1 2015-11-20 2015-11-20 107075208 ENSG00000249074 OTTHUMG00000161419 NG_046540 PGOHUM00000300407 +HGNC:7698 NDUFB3 NADH:ubiquinone oxidoreductase subunit B3 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 B12 complex I B12 subunit "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-17 2015-11-20 2015-11-20 4709 ENSG00000119013 OTTHUMG00000132820 uc002uwx.6 AF047183 NM_002491 CCDS2336 O43676 "9425316|11474204" MGI:1913745 RGD:1310737 NDUFB3 603839 292321 +HGNC:13673 NDUFB3P1 NADH:ubiquinone oxidoreductase subunit B3 pseudogene 1 pseudogene pseudogene Approved 1p13.3 01p13.3 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) pseudogene 1|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 1" 2000-09-28 2015-11-20 2015-11-20 93993 NG_000954 11474204 +HGNC:13674 NDUFB3P2 NADH:ubiquinone oxidoreductase subunit B3 pseudogene 2 pseudogene pseudogene Approved 9q33.3 09q33.3 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) pseudogene 2|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 2" 2000-09-28 2015-11-20 2015-11-20 93994 NG_000955 11474204 +HGNC:13675 NDUFB3P3 NADH:ubiquinone oxidoreductase subunit B3 pseudogene 3 pseudogene pseudogene Approved 14q22.1 14q22.1 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) pseudogene 3|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 3" 2000-09-28 2015-11-20 2015-11-20 93996 NG_000957 11474204 +HGNC:13676 NDUFB3P4 NADH:ubiquinone oxidoreductase subunit B3 pseudogene 4 pseudogene pseudogene Approved 14q32.2 14q32.2 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) pseudogene 4|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 4" 2000-09-28 2015-11-20 2015-11-20 93995 NG_000956 11474204 +HGNC:13677 NDUFB3P5 NADH:ubiquinone oxidoreductase subunit B3 pseudogene 5 pseudogene pseudogene Approved Xq26.3-q27.3 Xq26.3-q27.3 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3 (12kD, B12) pseudogene 5|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 3, 12kDa pseudogene 5" 2000-09-28 2015-11-20 2015-11-20 93997 NG_000958 +HGNC:7699 NDUFB4 NADH:ubiquinone oxidoreductase subunit B4 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 B15 complex I B15 subunit "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4 (15kD, B15)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-09 2015-11-20 2015-11-20 4710 ENSG00000065518 OTTHUMG00000159442 uc003edu.4 AF044957 NM_004547 "CCDS2999|CCDS54630" O95168 9878551 MGI:1915444 RGD:1307072 NDUFB4 603840 +HGNC:45248 NDUFB4P1 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 1 pseudogene pseudogene Approved 3p14.1 03p14.1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa pseudogene 1 2013-03-11 2015-11-20 2015-11-20 100288654 ENSG00000242510 OTTHUMG00000158738 NG_030111 PGOHUM00000299456 +HGNC:45250 NDUFB4P2 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 2 pseudogene pseudogene Approved 5q11.2 05q11.2 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa pseudogene 2 2013-03-11 2015-11-20 2015-11-20 100132036 ENSG00000251306 OTTHUMG00000162215 NG_012967 PGOHUM00000300966 +HGNC:45251 NDUFB4P3 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2015-11-20 2015-11-20 100288420 ENSG00000231096 OTTHUMG00000059509 NG_030100 PGOHUM00000294315 +HGNC:45252 NDUFB4P4 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 4 pseudogene pseudogene Approved 2p23.3 02p23.3 2015-11-20 2015-11-20 107075092 ENSG00000217718 OTTHUMG00000152175 NG_046367 PGOHUM00000297815 +HGNC:45253 NDUFB4P5 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 5 pseudogene pseudogene Approved 2p11.2 02p11.2 2015-11-20 2015-11-20 107075096 ENSG00000226114 OTTHUMG00000153279 NG_046369 PGOHUM00000297948 +HGNC:45254 NDUFB4P6 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 6 pseudogene pseudogene Approved 2q14.1 02q14.1 2015-11-20 2015-11-20 107075097 ENSG00000235258 OTTHUMG00000153287 NG_046370 PGOHUM00000298076 +HGNC:45255 NDUFB4P7 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 7 pseudogene pseudogene Approved 2p11.2 02p11.2 2015-11-20 2015-11-20 107075094 ENSG00000225428 OTTHUMG00000151561 NG_046368 PGOHUM00000298507 +HGNC:45256 NDUFB4P8 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 8 pseudogene pseudogene Approved 1p36.33 01p36.33 2015-11-20 2015-11-20 107075246 ENSG00000223663 OTTHUMG00000002972 NG_046371 PGOHUM00000296187 +HGNC:45257 NDUFB4P9 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 9 pseudogene pseudogene Approved 4q31.1 04q31.1 2015-11-20 2015-11-20 107075211 ENSG00000249754 OTTHUMG00000161375 PGOHUM00000300012 +HGNC:45258 NDUFB4P10 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 10 pseudogene pseudogene Approved 20q13.12 20q13.12 2015-11-20 2015-11-20 107075105 ENSG00000232880 OTTHUMG00000032580 NG_046541 PGOHUM00000297005 +HGNC:45259 NDUFB4P11 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 11 pseudogene pseudogene Approved 14q32.32 14q32.32 2015-11-20 2015-11-20 107075247 ENSG00000259374 OTTHUMG00000171891 NG_046542 PGOHUM00000292770 +HGNC:45260 NDUFB4P12 NADH:ubiquinone oxidoreductase subunit B4 pseudogene 12 pseudogene pseudogene Approved 4p13 04p13 2015-11-20 2015-11-20 402175 ENSG00000124399 OTTHUMG00000160452 NG_030266 PGOHUM00000300192 +HGNC:7700 NDUFB5 NADH:ubiquinone oxidoreductase subunit B5 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "SGDH|CI-SGDH|MGC12314" complex I SGDH subunit "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5 (16kD, SGDH)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-09 2015-11-20 2016-10-05 4711 ENSG00000136521 OTTHUMG00000157480 uc003fkc.4 AF047181 NM_002492 "CCDS3234|CCDS56297|CCDS75054" O43674 9425316 MGI:1913296 RGD:1305909 NDUFB5 603841 +HGNC:52267 NDUFB5P1 NADH:ubiquinone oxidoreductase subunit B5 pseudogene 1 pseudogene pseudogene Approved 4q34.3 04q34.3 2015-11-20 2015-11-20 100288337 ENSG00000251025 OTTHUMG00000160962 NG_022040 PGOHUM00000300082 +HGNC:52268 NDUFB5P2 NADH:ubiquinone oxidoreductase subunit B5 pseudogene 2 pseudogene pseudogene Approved Xq21.33 Xq21.33 2015-11-20 2015-11-20 100422431 ENSG00000214628 OTTHUMG00000021988 NG_026737 PGOHUM00000304767 +HGNC:7701 NDUFB6 NADH:ubiquinone oxidoreductase subunit B6 protein-coding gene gene with protein product Approved 9p21.1 09p21.1 "B17|CI" "NADH-ubiquinone oxidoreductase beta subunit, 6|NADH-ubiquinone oxidoreductase B17 subunit|complex I, mitochondrial respiratory chain, B17 subunit" "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6 (17kD, B17)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6, 17kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-09 2015-11-20 2016-10-05 4712 ENSG00000165264 OTTHUMG00000019741 uc003zre.3 AF035840 NM_002493 "CCDS6528|CCDS6529|CCDS75826" O95139 "9763677|9760212" MGI:2684983 RGD:1311354 NDUFB6 603322 +HGNC:7702 NDUFB7 NADH:ubiquinone oxidoreductase subunit B7 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "B18|CI-B18|MGC2480" "NADH-ubiquinone oxidoreductase B18 subunit|complex I B18 subunit" "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7 (18kD, B18)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-09 2015-11-20 2015-11-20 4713 ENSG00000099795 OTTHUMG00000183291 uc002mzg.4 NM_004146 CCDS12314 P17568 "9763677|10830904" MGI:1914166 RGD:1308550 NDUFB7 603842 +HGNC:7703 NDUFB8 NADH:ubiquinone oxidoreductase subunit B8 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "ASHI|CI-ASHI" complex I ASHI subunit "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8 (19kD, ASHI)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1996-10-18 2015-11-20 2015-11-20 4714 ENSG00000166136 OTTHUMG00000019346 uc001kri.3 AF044958 NM_005004 "CCDS7497|CCDS65916|CCDS65917" O95169 9763676 MGI:1914514 RGD:1309129 NDUFB8 602140 +HGNC:20023 NDUFB8P1 NADH:ubiquinone oxidoreductase subunit B8 pseudogene 1 pseudogene pseudogene Approved 14q24.3 14q24.3 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 1 2003-01-13 2015-11-20 2015-11-20 326606 ENSG00000258972 OTTHUMG00000171641 NG_002595 +HGNC:33978 NDUFB8P2 NADH:ubiquinone oxidoreductase subunit B8 pseudogene 2 pseudogene pseudogene Approved 17q23.1 17q23.1 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 2 2008-01-31 2015-11-20 2015-11-20 729565 ENSG00000270264 OTTHUMG00000184889 XR_015999 +HGNC:33979 NDUFB8P3 NADH:ubiquinone oxidoreductase subunit B8 pseudogene 3 pseudogene pseudogene Approved 11p13 11p13 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, pseudogene 3 2008-01-31 2015-11-20 2015-11-20 100132286 NG_007868 +HGNC:7704 NDUFB9 NADH:ubiquinone oxidoreductase subunit B9 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "B22|UQOR22|LYRM3" complex I B22 subunit "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (22kD, B22)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9, 22kDa" "LYR motif containing|NADH:ubiquinone oxidoreductase supernumerary subunits" "635|1150" 1996-10-18 2015-11-20 2015-11-20 4715 ENSG00000147684 OTTHUMG00000165054 uc003yrg.5 AF044956 NM_005005 "CCDS6352|CCDS83324" Q9Y6M9 8661098 MGI:1913468 RGD:1307114 NDUFB9 601445 292027 +HGNC:52269 NDUFB9P1 NADH:ubiquinone oxidoreductase subunit B9 pseudogene 1 pseudogene pseudogene Approved 5q13.2 05q13.2 2015-11-20 2015-11-20 107075233 ENSG00000271045 OTTHUMG00000184558 PGOHUM00000300984 +HGNC:52270 NDUFB9P2 NADH:ubiquinone oxidoreductase subunit B9 pseudogene 2 pseudogene pseudogene Approved 7q32.3 07q32.3 2015-11-20 2015-11-20 100128596 ENSG00000236281 OTTHUMG00000155054 NG_030054 PGOHUM00000302430 +HGNC:52271 NDUFB9P3 NADH:ubiquinone oxidoreductase subunit B9 pseudogene 3 pseudogene pseudogene Approved 8q23.2 08q23.2 2015-11-20 2015-11-20 100129370 ENSG00000253994 OTTHUMG00000164906 NG_022402 PGOHUM00000303355 +HGNC:7696 NDUFB10 NADH:ubiquinone oxidoreductase subunit B10 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 PDSW complex I PDSW subunit "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10 (22kD, PDSW)|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10, 22kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-09 2015-11-20 2015-11-20 4716 ENSG00000140990 OTTHUMG00000128709 uc002cni.3 AF044954 NM_004548 CCDS10451 O96000 "9763677|9878551" MGI:1915592 RGD:1310782 NDUFB10 603843 +HGNC:52272 NDUFB10P1 NADH:ubiquinone oxidoreductase subunit B10 pseudogene 1 pseudogene pseudogene Approved 15q21.3 15q21.3 2015-11-20 2015-11-20 100128711 ENSG00000260870 OTTHUMG00000176412 NG_022109 PGOHUM00000292958 +HGNC:52273 NDUFB10P2 NADH:ubiquinone oxidoreductase subunit B10 pseudogene 2 pseudogene pseudogene Approved 7q34 07q34 2015-11-20 2015-11-20 107075304 ENSG00000261624 OTTHUMG00000172760 PGOHUM00000302966 +HGNC:20372 NDUFB11 NADH:ubiquinone oxidoreductase subunit B11 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "ESSS|NP17.3|Np15" complex I NP17.3 subunit NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, 17.3kDa NADH:ubiquinone oxidoreductase supernumerary subunits 1150 2004-09-02 2015-11-20 2015-11-20 54539 ENSG00000147123 OTTHUMG00000021433 uc004dhd.4 AF044213 NM_019056 "CCDS14273|CCDS48100" Q9NX14 "10544803|12381726" MGI:1349919 RGD:1563698 NDUFB11 300403 426792 +HGNC:33980 NDUFB11P1 NADH:ubiquinone oxidoreductase subunit B11 pseudogene 1 pseudogene pseudogene Approved 11q14.3 11q14.3 NDUFB11P "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, pseudogene|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11, pseudogene 1" 2008-01-31 2010-02-26 2015-11-20 2015-11-20 390239 ENSG00000235547 OTTHUMG00000154744 NG_009688 PGOHUM00000242424 +HGNC:7705 NDUFC1 NADH:ubiquinone oxidoreductase subunit C1 protein-coding gene gene with protein product Approved 4q31.1 04q31.1 KFYI complex I KFYI subunit "NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1 (6kD, KFYI)|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-17 2015-11-20 2015-11-20 4717 ENSG00000109390 OTTHUMG00000133387 uc021xsd.1 AF047184 NM_002494 CCDS3746 O43677 "9425316|9763677" MGI:1913627 RGD:1586362 NDUFC1 603844 +HGNC:7706 NDUFC2 NADH:ubiquinone oxidoreductase subunit C2 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "B14.5b|HLC-1" "human lung cancer oncogene 1|complex I subunit B14.5b" "NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 (14.5kD, B14.5b)|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2, 14.5kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1997-12-17 2015-11-20 2015-11-20 4718 ENSG00000151366 OTTHUMG00000166614 uc009yuw.4 AF087659 NM_004549 "CCDS8257|CCDS55779|CCDS55781" O95298 9878551 MGI:1344370 RGD:1307511 NDUFC2 603845 +HGNC:42956 NDUFC2-KCTD14 NDUFC2-KCTD14 readthrough other readthrough Approved 11q14.1 11q14.1 2011-09-28 2011-09-28 100532726 ENSG00000259112 OTTHUMG00000171802 uc021qns.2 NM_001203262 "CCDS55780|CCDS73353|CCDS73354" E9PQ53 +HGNC:7707 NDUFS1 NADH:ubiquinone oxidoreductase core subunit S1 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 CI-75k "complex I 75kDa subunit|NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial" "NADH dehydrogenase (ubiquinone) Fe-S protein 1 (75kD) (NADH-coenzyme Q reductase)|NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kDa (NADH-coenzyme Q reductase)" NADH:ubiquinone oxidoreductase core subunits 1149 1992-04-03 2015-11-20 2016-10-05 4719 ENSG00000023228 OTTHUMG00000132892 uc002vbe.4 NM_005006 "CCDS2366|CCDS56162|CCDS56163|CCDS56164|CCDS56165" P28331 1935949 MGI:2443241 RGD:1359670 NDUFS1 157655 123727 1.6.5.3 +HGNC:7708 NDUFS2 NADH:ubiquinone oxidoreductase core subunit S2 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 CI-49 "complex I 49kDa subunit|NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial" "NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD) (NADH-coenzyme Q reductase)|NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa (NADH-coenzyme Q reductase)" NADH:ubiquinone oxidoreductase core subunits 1149 1992-06-30 2015-11-20 2015-11-20 4720 ENSG00000158864 OTTHUMG00000034344 uc001fyv.4 BC008868 NM_004550 "CCDS1224|CCDS53404" O75306 "1832859|9585441" MGI:2385112 RGD:1307109 NDUFS2 602985 123729 1.6.5.3 +HGNC:7710 NDUFS3 NADH:ubiquinone oxidoreductase core subunit S3 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 CI-30 "complex I 30kDa subunit|NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial" "NADH dehydrogenase (ubiquinone) Fe-S protein 3 (30kD) (NADH-coenzyme Q reductase)|NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kDa (NADH-coenzyme Q reductase)" NADH:ubiquinone oxidoreductase core subunits 1149 1995-11-08 2015-11-20 2016-10-05 4722 ENSG00000213619 OTTHUMG00000166893 uc001nga.3 AF067139 NM_004551 CCDS7941 O75489 9763677 MGI:1915599 RGD:1309406 NDUFS3 603846 123731 1.6.5.3 +HGNC:7711 NDUFS4 NADH:ubiquinone oxidoreductase subunit S4 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "AQDQ|CI-18" complex I 18kDa subunit "NADH dehydrogenase (ubiquinone) Fe-S protein 4 (18kD) (NADH-coenzyme Q reductase)|NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kDa (NADH-coenzyme Q reductase)" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1995-11-08 2015-11-20 2016-10-05 4724 ENSG00000164258 OTTHUMG00000096987 uc003jpe.3 AF020351 NM_002495 CCDS3960 O43181 "9463323|9763677" MGI:1343135 RGD:1594380 NDUFS4 602694 123733 +HGNC:7712 NDUFS5 NADH:ubiquinone oxidoreductase subunit S5 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 CI-15k "complex I 51kDa subunit|NADH dehydrogenase [ubiquinone] iron-sulfur protein 5" "NADH dehydrogenase (ubiquinone) Fe-S protein 5 (15kD) (NADH-coenzyme Q reductase)|NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1995-11-08 2015-11-20 2016-10-05 4725 ENSG00000168653 OTTHUMG00000007497 uc001ccx.4 AF047434 NM_004552 CCDS434 O43920 "9763677|9653160" MGI:1890889 RGD:1311081 NDUFS5 603847 +HGNC:44039 NDUFS5P1 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 1 pseudogene pseudogene Approved 6q23.3 06q23.3 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 1 2012-05-29 2015-11-20 2015-11-20 100996944 ENSG00000218424 OTTHUMG00000016412 NG_033277 PGOHUM00000243389 +HGNC:44040 NDUFS5P2 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 2 pseudogene pseudogene Approved 1p21.3 01p21.3 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 2 2012-05-29 2015-11-20 2015-11-20 100286918 ENSG00000234226 OTTHUMG00000010687 NG_021376 PGOHUM00000244117 +HGNC:44041 NDUFS5P3 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 3 pseudogene pseudogene Approved 1p32.3 01p32.3 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 3 2012-05-29 2015-11-20 2015-11-20 100288149 ENSG00000233664 OTTHUMG00000008506 NG_021377 PGOHUM00000244724 +HGNC:44042 NDUFS5P4 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 4 pseudogene pseudogene Approved 4q23 04q23 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 4 2012-05-29 2015-11-20 2015-11-20 100287817 ENSG00000251437 OTTHUMG00000161233 NG_021378 PGOHUM00000245630 +HGNC:44043 NDUFS5P5 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 5 pseudogene pseudogene Approved 4q26 04q26 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 5 2012-05-29 2015-11-20 2015-11-20 100128177 ENSG00000230671 OTTHUMG00000161383 NG_021379 PGOHUM00000245671 +HGNC:44044 NDUFS5P6 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 6 pseudogene pseudogene Approved 8q13.2 08q13.2 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 6 2012-05-29 2015-11-20 2015-11-20 106480785 ENSG00000255531 OTTHUMG00000165217 NG_044048 PGOHUM00000249700 +HGNC:44045 NDUFS5P7 NADH:ubiquinone oxidoreductase subunit S5 pseudogene 7 pseudogene pseudogene Approved 17q11.2 17q11.2 NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase) pseudogene 7 2012-05-29 2015-11-20 2015-11-20 100130794 NG_012737 PGOHUM00000250814 +HGNC:7713 NDUFS6 NADH:ubiquinone oxidoreductase subunit S6 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 CI-13kA "complex I 13kDa subunit A|NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial" "NADH dehydrogenase (ubiquinone) Fe-S protein 6 (13kD) (NADH-coenzyme Q reductase)|NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa (NADH-coenzyme Q reductase)" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1995-11-08 2015-11-20 2015-11-20 4726 ENSG00000145494 OTTHUMG00000090372 uc003jcy.5 BC038664 NM_004553 CCDS3866 O75380 9763677 MGI:107932 RGD:3156 NDUFS6 603848 123736 "1.6.99.3|1.6.5.3" +HGNC:52274 NDUFS6P1 NADH:ubiquinone oxidoreductase subunit S6 pseudogene 1 pseudogene pseudogene Approved 3q22.2 03q22.2 2015-11-20 2015-11-20 107075209 ENSG00000241905 OTTHUMG00000159765 NG_046543 PGOHUM00000299186 +HGNC:7714 NDUFS7 NADH:ubiquinone oxidoreductase core subunit S7 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PSST|FLJ46880|FLJ45860|CI-20" "complex I 20kDa subunit|NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial" "NADH dehydrogenase (ubiquinone) Fe-S protein 7 (20kD) (NADH-coenzyme Q reductase)|NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa (NADH-coenzyme Q reductase)" NADH:ubiquinone oxidoreductase core subunits 1149 1996-07-26 2015-11-20 2016-10-05 374291 ENSG00000115286 OTTHUMG00000168077 uc002lse.5 AF115969 NM_024407 CCDS12063 O75251 8938450 MGI:1922656 RGD:1310013 NDUFS7 601825 123738 +HGNC:7715 NDUFS8 NADH:ubiquinone oxidoreductase core subunit S8 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "TYKY|CI-23k" "complex I 23kDa subunit|NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial" "NADH dehydrogenase (ubiquinone) Fe-S protein 8 (23kD) (NADH-coenzyme Q reductase)|NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase)" NADH:ubiquinone oxidoreductase core subunits 1149 1996-07-26 2015-11-20 2015-11-20 4728 ENSG00000110717 OTTHUMG00000167331 uc001onc.4 U65579 NM_002496 CCDS8176 O00217 "9666055|9116042" MGI:2385079 RGD:1309436 NDUFS8 602141 123743 1.6.5.3 +HGNC:7716 NDUFV1 NADH:ubiquinone oxidoreductase core subunit V1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 CI-51K "complex I 51kDa subunit|NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial" "NADH dehydrogenase (ubiquinone) flavoprotein 1 (51kD)|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa" NADH:ubiquinone oxidoreductase core subunits 1149 1993-07-09 2015-11-20 2016-10-05 4723 ENSG00000167792 OTTHUMG00000166215 uc001omj.3 AF092131 NM_007103 "CCDS8173|CCDS53669" P49821 1478657 MGI:107851 RGD:1359247 NDUFV1 161015 123745 1.6.5.3 +HGNC:7717 NDUFV2 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding gene gene with protein product Approved 18p11.22 18p11.22 CI-24k "complex I 24kDa subunit|NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial" "NADH dehydrogenase (ubiquinone) flavoprotein 2 (24kD)|NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kDa" NADH:ubiquinone oxidoreductase core subunits 1149 1994-09-07 2015-11-20 2015-11-20 4729 ENSG00000178127 OTTHUMG00000131593 uc002knu.3 X84421 NM_021074 CCDS11842 P19404 "9763677|7607668" MGI:1920150 RGD:621733 NDUFV2 600532 123747 1.6.5.3 +HGNC:50826 NDUFV2-AS1 NDUFV2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18p11.22 18p11.22 2014-06-21 2014-06-25 101927275 ENSG00000266053 OTTHUMG00000179232 NR_110772 +HGNC:7718 NDUFV2P1 NADH:ubiquinone oxidoreductase core subunit V2 pseudogene 1 pseudogene pseudogene Approved 19q13.42 19q13.42 NADH dehydrogenase (ubiquinone) flavoprotein 2 pseudogene 1 1994-09-07 2015-11-20 2015-11-20 4730 ENSG00000267809 OTTHUMG00000182889 X84682 NG_001161 7607668 PGOHUM00000295119 +HGNC:7719 NDUFV3 NADH:ubiquinone oxidoreductase subunit V3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 CI-10k complex I 10kDa subunit "NADH dehydrogenase (ubiquinone) flavoprotein 3 (10kD)|NADH dehydrogenase (ubiquinone) flavoprotein 3, 10kDa" NADH:ubiquinone oxidoreductase supernumerary subunits 1150 1994-09-07 2015-11-20 2015-11-20 4731 ENSG00000160194 OTTHUMG00000086823 uc002zcn.4 XM_011529586 "CCDS33572|CCDS33573" P56181 9344673 MGI:1890894 RGD:621020 NDUFV3 602184 1.6.5.3 +HGNC:30815 NEAT1 nuclear paraspeckle assembly transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 11q13.1 11q13.1 "TncRNA|MENepsilon/beta|LINC00084|VINC" "trophoblast derived non-protein coding RNA|nuclear enriched abundant transcript 1|long intergenic non-protein coding RNA 84|virus inducible non-coding RNA" NCRNA00084 non-protein coding RNA 84 Long non-coding RNAs 788 2008-09-02 2009-07-24 2009-07-24 2014-11-19 283131 ENSG00000245532 OTTHUMG00000166321 uc010rog.3 AF080092 NR_028272 "9253601|9858482|12565840" MGI:1914211 612769 NEAT1 +HGNC:7720 NEB nebulin protein-coding gene gene with protein product Approved 2q23.3 02q23.3 NEB177D nemaline myopathy type 2 NEM2 2001-06-22 2016-10-12 4703 ENSG00000183091 OTTHUMG00000153784 uc031rpp.1 X83957 NM_004543 "CCDS46424|CCDS54407|CCDS54408|CCDS74588" P20929 "10051637|9359044" MGI:97292 RGD:1311134 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=NEB|LRG_202|http://www.lrg-sequence.org/LRG/LRG_202" NEB 161650 123749 +HGNC:16932 NEBL nebulette protein-coding gene gene with protein product Approved 10p12.31 10p12.31 "LASP2|LNEBL" "LIM and SH3 protein 2|LIM-nebulette" LIM domain containing 1218 2004-05-27 2016-10-12 10529 ENSG00000078114 OTTHUMG00000017788 uc001iqk.4 Y16241 NM_006393 "CCDS7133|CCDS7134" O76041 "9733644|10470015" MGI:1921353 RGD:1308315 LRG_411|http://www.lrg-sequence.org/LRG/LRG_411 NEBL 605491 +HGNC:44899 NEBL-AS1 NEBL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p12.31 10p12.31 2012-12-12 2012-12-12 100128511 ENSG00000231920 OTTHUMG00000017789 uc031ptk.3 NR_046283 +HGNC:20983 NECAB1 N-terminal EF-hand calcium binding protein 1 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 EFCBP1 EF-hand calcium binding protein 1 "N-terminal EF-hand calcium binding proteins|EF-hand domain containing" "663|863" 2003-04-30 2007-12-06 2007-12-06 2014-11-19 64168 ENSG00000123119 OTTHUMG00000164009 uc011lgg.3 AF414126 NM_022351 CCDS47889 Q8N987 MGI:1916602 RGD:708548 NECAB1 +HGNC:23746 NECAB2 N-terminal EF-hand calcium binding protein 2 protein-coding gene gene with protein product Approved 16q23.3 16q23.3 EFCBP2 EF-hand calcium binding protein 2 "N-terminal EF-hand calcium binding proteins|EF-hand domain containing" "663|863" 2004-01-27 2007-12-06 2007-12-06 2016-10-05 54550 ENSG00000103154 OTTHUMG00000137636 uc002fhd.4 AY299331 NM_019065 "CCDS10940|CCDS82019" Q7Z6G3 12044471 MGI:2152211 RGD:621844 NECAB2 +HGNC:15851 NECAB3 N-terminal EF-hand calcium binding protein 3 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "XB51|dJ63M2.4|NIP1|dJ63M2.5|EFCBP3" EF-hand calcium binding protein 3 "SYTIP2|APBA2BP" amyloid beta (A4) precursor protein-binding, family A, member 2 binding protein "N-terminal EF-hand calcium binding proteins|EF-hand domain containing" "663|863" 2001-06-21 2007-12-06 2007-12-06 2016-10-05 63941 ENSG00000125967 OTTHUMG00000032264 uc002wzn.5 AB039947 XM_017028015 "CCDS42866|CCDS42867" Q96P71 10833507 MGI:1861721 NECAB3 612478 +HGNC:24539 NECAP1 NECAP endocytosis associated 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 DKFZP566B183 2005-08-15 2014-11-19 25977 ENSG00000089818 OTTHUMG00000168568 uc001qtx.3 AK074923 NM_015509 CCDS8589 Q8NC96 "14555962|15494011" MGI:1914852 RGD:1306053 NECAP1 611623 400742 +HGNC:43912 NECAP1P1 NECAP endocytosis associated 1 pseudogene 1 pseudogene pseudogene Approved 7p14.1 07p14.1 2012-05-02 2014-11-19 442668 ENSG00000178503 OTTHUMG00000154990 NG_009426 PGOHUM00000232653 +HGNC:43913 NECAP1P2 NECAP endocytosis associated 1 pseudogene 2 pseudogene pseudogene Approved 2p13.1 02p13.1 2012-05-02 2014-11-19 106479026 ENSG00000234632 OTTHUMG00000152815 NG_044304 PGOHUM00000240690 +HGNC:25528 NECAP2 NECAP endocytosis associated 2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 FLJ10420 2005-08-15 2014-11-19 55707 ENSG00000157191 OTTHUMG00000002313 uc001ayo.4 AK021938 NM_018090 "CCDS173|CCDS44066|CCDS44067" Q9NVZ3 "14555962|15494011" MGI:1913397 RGD:735063 NECAP2 611624 +HGNC:9706 NECTIN1 nectin cell adhesion molecule 1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "PRR|PRR1|PVRR1|SK-12|HIgR|CLPED1|CD111|OFC7" nectin "HVEC|ED4|PVRL1" poliovirus receptor-related 1 (herpesvirus entry mediator C) "CD molecules|V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "471|590|592|594" 1999-11-15 2016-02-12 2016-02-12 2016-02-12 5818 ENSG00000110400 OTTHUMG00000166177 uc001pwv.4 X76400 NM_203285 "CCDS8425|CCDS8426|CCDS8427" Q15223 "7721102|9616127" MGI:1926483 RGD:620791 600644 118162 CD111 +HGNC:9707 NECTIN2 nectin cell adhesion molecule 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "PVRR2|PRR2|CD112" "HVEB|PVRL2" poliovirus receptor-related 2 (herpesvirus entry mediator B) "CD molecules|V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "471|590|592|594" 1999-11-15 2016-02-12 2016-02-12 2016-02-12 5819 ENSG00000130202 OTTHUMG00000180839 uc002ozv.4 X80038 NM_002856 "CCDS12645|CCDS42576" Q92692 "7622062|10196354" MGI:97822 RGD:1309505 600798 CD112 +HGNC:17664 NECTIN3 nectin cell adhesion molecule 3 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 "nectin-3|PPR3|PVRR3|DKFZP566B0846|CDw113|CD113" PVRL3 poliovirus receptor-related 3 "CD molecules|V-set domain containing|C2-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "471|590|592|593|594" 2004-02-11 2016-02-12 2016-02-12 2016-10-05 25945 ENSG00000177707 OTTHUMG00000159239 uc003dxt.3 AF282874 NM_015480 "CCDS2957|CCDS58842|CCDS58843" Q9NQS3 11024295 MGI:1930171 RGD:1309516 607147 CDw113 +HGNC:19688 NECTIN4 nectin cell adhesion molecule 4 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "nectin-4|PRR4|LNIR" PVRL4 poliovirus receptor-related 4 "V-set domain containing|C2-set domain containing" "590|592" 2004-02-11 2016-02-12 2016-02-12 2016-02-12 81607 ENSG00000143217 OTTHUMG00000031475 uc001fxo.3 AF426163 NM_030916 CCDS1216 Q96NY8 11544254 MGI:1918990 RGD:1559826 609607 251683 +HGNC:7723 NEDD1 neural precursor cell expressed, developmentally down-regulated 1 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "GCP-WD|TUBGCP7" WD repeat domain containing 362 1994-01-21 2015-08-25 121441 ENSG00000139350 OTTHUMG00000170604 uc001teu.5 XM_005268644 "CCDS9063|CCDS44955|CCDS44956" Q8NHV4 MGI:97293 RGD:1307750 NEDD1 600372 +HGNC:7727 NEDD4 neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "KIAA0093|MGC176705|NEDD4-1|RPF1" receptor-potentiating factor 1 neural precursor cell expressed, developmentally down-regulated 4 1994-01-21 2012-02-23 2016-10-05 4734 ENSG00000069869 OTTHUMG00000132015 uc002adl.5 D42055 NM_198400 "CCDS10156|CCDS45265|CCDS61643|CCDS61644" P46934 "9073511|8649367" MGI:97297 RGD:3157 NEDD4 602278 +HGNC:7728 NEDD4L neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 18q21.31 18q21.31 "KIAA0439|RSP5|NEDD4-2" neural precursor cell expressed, developmentally down-regulated 4-like C2 domain containing 823 2000-03-14 2012-02-23 2014-08-12 23327 ENSG00000049759 OTTHUMG00000179875 uc002lgy.4 AF210730 XM_005266658 "CCDS45872|CCDS45873|CCDS45874|CCDS45875|CCDS45876|CCDS58632|CCDS59323" Q96PU5 "10594025|11244092|18322022" MGI:1933754 RGD:735047 NEDD4L 606384 +HGNC:7732 NEDD8 neural precursor cell expressed, developmentally down-regulated 8 protein-coding gene gene with protein product Approved 14q12 14q12 Nedd-8 1994-01-21 2016-10-05 4738 ENSG00000129559 OTTHUMG00000029325 uc001wnn.3 D23662 NM_006156 CCDS9621 Q15843 9353319 MGI:97301 RGD:3158 NEDD8 603171 +HGNC:39551 NEDD8-MDP1 NEDD8-MDP1 readthrough other readthrough Approved 14q12 14q12 2011-02-21 2014-11-19 100528064 ENSG00000255526 OTTHUMG00000167107 uc059ace.1 NM_001199823.1 +HGNC:7733 NEDD9 neural precursor cell expressed, developmentally down-regulated 9 protein-coding gene gene with protein product Approved 6p24.2 06p24.2 "HEF1|CAS-L|CASS2" "Cas scaffolding protein family member 2|Cas-like" Cas scaffolding proteins 469 1994-01-21 2015-08-25 4739 ENSG00000111859 OTTHUMG00000014255 uc063lwa.1 L43821 NM_006403 "CCDS4520|CCDS34340|CCDS47373|CCDS75400" Q14511 MGI:97302 RGD:1306276 NEDD9 602265 +HGNC:7737 NEFH neurofilament heavy polypeptide protein-coding gene gene with protein product Approved 22q12.2 22q12.2 neurofilament, heavy polypeptide 200kDa Intermediate filaments Type IV 611 1988-08-31 2016-07-04 2016-07-04 4744 ENSG00000100285 OTTHUMG00000151155 uc003afo.4 NM_021076 CCDS13858 P12036 MGI:97309 RGD:3159 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ NEFH 162230 123752 HGNC:7737 +HGNC:7738 NEFHP1 neurofilament, heavy polypeptide pseudogene 1 pseudogene pseudogene Approved 1p13.1 01p13.1 neurofilament, heavy polypeptide 200kDa (NEFH) pseudogene NEFHL "neurofilament, heavy polypeptide-like|neurofilament, heavy polypeptide-like pseudogene" 1989-05-10 2010-10-15 2010-10-15 2014-11-19 339396 ENSG00000223489 OTTHUMG00000022752 NG_022735 PGOHUM00000244157 +HGNC:7739 NEFL neurofilament, light polypeptide protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "NFL|CMT1F|CMT2E|NF68|PPP1R110" protein phosphatase 1, regulatory subunit 110 neurofilament, light polypeptide 68kDa "Intermediate filaments Type IV|Protein phosphatase 1 regulatory subunits" "611|694" 2001-06-22 2008-09-19 2016-10-12 4747 ENSG00000277586 OTTHUMG00000134284 uc033bfe.2 NM_006158 CCDS75712 P07196 "17620486|3145240" MGI:97313 RGD:621458 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_259|http://www.lrg-sequence.org/LRG/LRG_259" NEFL 162280 123754 HGNC:7739 +HGNC:7740 NEFLL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-09 +HGNC:7741 NEFLL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-30 +HGNC:37662 NEFLP1 neurofilament, light polypeptide pseudogene 1 pseudogene pseudogene Approved Yq11.223 Yq11.223 2009-12-16 2014-11-19 359795 ENSG00000232634 OTTHUMG00000036542 NG_002813 12815422 +HGNC:7734 NEFM neurofilament, medium polypeptide protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "NFM|NF-M" NEF3 neurofilament, medium polypeptide 150kDa Intermediate filaments Type IV 611 1989-10-18 2006-11-20 2008-09-19 2016-10-05 4741 ENSG00000104722 OTTHUMG00000131990 uc003xed.5 BC002421 NM_005382 "CCDS6046|CCDS47831" P07197 1348579 MGI:97314 RGD:3160 NEFM 162250 HGNC:7734 +HGNC:45030 NEFMP1 neurofilament, medium polypeptide pseudogene 1 pseudogene pseudogene Approved 10q21.1 10q21.1 2013-01-08 2013-01-08 100420737 ENSG00000224697 OTTHUMG00000018258 NG_025505 PGOHUM00000238803 +HGNC:17302 NEGR1 neuronal growth regulator 1 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "KILON|MGC46680|Ntra|IGLON4" "a kindred of IgLON|neurotractin|IgLON family member 4" "I-set domain containing|IgLON cell adhesion molecules" "593|1052" 2003-09-09 2014-11-19 257194 ENSG00000172260 OTTHUMG00000009698 uc001dfw.4 AK092307 NM_173808 CCDS661 Q7Z3B1 10075727 MGI:2444846 RGD:708416 NEGR1 613173 +HGNC:43593 NEGR1-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-12 +HGNC:41432 NEGR1-IT1 NEGR1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 NEGR1 intronic transcript 1 (non-protein coding) 2011-11-22 2015-02-25 2015-02-25 100852409 ENSG00000228853 OTTHUMG00000009732 uc031pmw.1 BC042082 NR_046218 +HGNC:18448 NEIL1 nei like DNA glycosylase 1 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "FLJ22402|hFPG1|NEI1|FPG1" DNA endonuclease eight-like glycosylase 1 nei endonuclease VIII-like 1 (E. coli) DNA glycosylases 1024 2002-04-26 2016-01-18 2016-10-05 79661 ENSG00000140398 OTTHUMG00000142821 uc002bad.5 AK026055 NM_024608 CCDS10278 Q96FI4 11904416 MGI:1920024 RGD:1306077 NEIL1 608844 +HGNC:18956 NEIL2 nei like DNA glycosylase 2 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "NEH2|FLJ31644|MGC2832|MGC4505" "nei like 2 (E. coli)|nei endonuclease VIII-like 2 (E. coli)" DNA glycosylases 1024 2002-07-25 2016-01-18 2016-01-18 252969 ENSG00000154328 OTTHUMG00000090753 uc003wue.3 AK056206 NM_145043 "CCDS5984|CCDS47802|CCDS47803" Q969S2 "12097317|17686777" MGI:2686058 RGD:1312033 NEIL2 608933 +HGNC:24573 NEIL3 nei like DNA glycosylase 3 protein-coding gene gene with protein product Approved 4q34.3 04q34.3 "FLJ10858|hFPG2|FPG2|hNEI3|ZGRF3" zinc finger, GRF-type containing 3 nei endonuclease VIII-like 3 (E. coli) "Zinc fingers RANBP2-type |Zinc fingers GRF-type|DNA glycosylases" "89|135|1024" 2005-01-26 2016-01-18 2016-10-05 55247 ENSG00000109674 OTTHUMG00000160722 uc003iut.3 AB079071 NM_018248 CCDS3828 Q8TAT5 "12713815|12509226|19170771|23755964" MGI:2384588 RGD:1310562 NEIL3 608934 "3.2.2.-|4.2.99.18" +HGNC:7744 NEK1 NIMA related kinase 1 protein-coding gene gene with protein product Approved 4q33 04q33 "NY-REN-55|KIAA1901" NIMA (never in mitosis gene a)-related kinase 1 1998-08-26 2016-01-13 2016-10-05 4750 ENSG00000137601 OTTHUMG00000160963 uc003isb.3 AB067488 XM_017008249 "CCDS47162|CCDS56348|CCDS56349|CCDS56350|CCDS56351" Q96PY6 "1382974|8274451" MGI:97303 RGD:1309375 NEK1 604588 258621 objectId:2114 +HGNC:7745 NEK2 NIMA related kinase 2 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "NLK1|NEK2A|RP67|PPP1R111" "HsPK 21|protein phosphatase 1, regulatory subunit 111" NIMA (never in mitosis gene a)-related kinase 2 Protein phosphatase 1 regulatory subunits 694 1998-08-26 2016-01-13 2016-01-13 4751 ENSG00000117650 OTTHUMG00000037121 uc001hir.3 U11050 NM_002497 "CCDS1500|CCDS55682|CCDS73024" P51955 "8274451|24043777" MGI:109359 RGD:1582899 NEK2 604043 368150 objectId:2117 +HGNC:19272 NEK2P1 NEK2 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 NEK2P NEK2 pseudogene 2003-01-13 2010-02-26 2010-02-26 2014-11-19 326302 NG_002554 PGOHUM00000248029 C19.P01 +HGNC:37816 NEK2P2 NEK2 pseudogene 2 pseudogene pseudogene Approved 22q11.1 22q11.1 2010-02-26 2014-11-19 100379667 ENSG00000231565 OTTHUMG00000140351 NG_016726 PGOHUM00000246368 +HGNC:37817 NEK2P3 NEK2 pseudogene 3 pseudogene pseudogene Approved 14q11.1 14q11.1 2010-02-26 2014-11-19 100158258 NG_007923 PGOHUM00000247698 +HGNC:37818 NEK2P4 NEK2 pseudogene 4 pseudogene pseudogene Approved 2q21.1 02q21.1 2010-02-26 2014-11-19 100381202 ENSG00000230450 OTTHUMG00000153538 NG_016766 PGOHUM00000240306 +HGNC:7746 NEK3 NIMA related kinase 3 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "HSPK36|MGC29949" "serine/threonine-protein kinase NEK3|phosphorylase B kinase kinase|glycogen synthase A kinase|hydroxyalkyl-protein kinase" NIMA (never in mitosis gene a)-related kinase 3 1998-08-26 2016-01-13 2016-10-05 4752 ENSG00000136098 OTTHUMG00000016958 uc032age.1 "AK290259|BC019916" NM_002498 CCDS73576 P51956 "8274451|7522034" MGI:1344371 RGD:1307419 NEK3 604044 objectId:2118 2.7.11.1 +HGNC:11399 NEK4 NIMA related kinase 4 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "NRK2|pp12301" serine/threonine protein kinase-2 STK2 "serine/threonine kinase 2|NIMA (never in mitosis gene a)-related kinase 4" 1995-05-10 2002-05-10 2016-01-13 2016-01-13 6787 ENSG00000114904 OTTHUMG00000158836 uc003dfq.5 L20321 NM_003157 "CCDS2863|CCDS54593" P51957 8208544 MGI:1344404 RGD:1304995 NEK4 601959 objectId:2119 2.7.11.1 +HGNC:39649 NEK4P1 NIMA-related kinase 4 pseudogene 1 pseudogene pseudogene Approved 21q21.1 21q21.1 NIMA (never in mitosis gene a)-related kinase 4 pseudogene 1 2011-03-18 2012-11-15 2016-08-15 100421718 ENSG00000225735 OTTHUMG00000074393 NG_025027 PGOHUM00000297224 +HGNC:39650 NEK4P2 NIMA-related kinase 4 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 NIMA (never in mitosis gene a)-related kinase 4 pseudogene 2 2011-03-18 2012-11-15 2016-08-15 100421734 ENSG00000264359 OTTHUMG00000178961 NG_026146 PGOHUM00000293967 +HGNC:39651 NEK4P3 NIMA-related kinase 4 pseudogene 3 pseudogene pseudogene Approved 10q21.3 10q21.3 NIMA (never in mitosis gene a)-related kinase 4 pseudogene 3 2011-03-18 2012-11-15 2016-08-15 100421728 ENSG00000270754 OTTHUMG00000184645 NG_025511 PGOHUM00000290183 +HGNC:7748 NEK5 NIMA related kinase 5 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 NIMA (never in mitosis gene a)-related kinase 5 1998-09-01 2016-01-13 2016-10-05 341676 ENSG00000197168 OTTHUMG00000016957 uc001vge.4 BC063885 NM_199289 CCDS31979 Q6P3R8 9552363 MGI:2142824 RGD:1593817 NEK5 616731 objectId:2120 +HGNC:7749 NEK6 NIMA related kinase 6 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 SID6-1512 putative serine-threonine protein kinase NIMA (never in mitosis gene a)-related kinase 6 1999-07-19 2016-01-13 2016-10-05 10783 ENSG00000119408 OTTHUMG00000020650 uc064vpi.1 AF087909 NM_014397 "CCDS6854|CCDS48015|CCDS55338|CCDS55339" Q9HC98 10702691 MGI:1891638 RGD:727779 NEK6 604884 objectId:2121 +HGNC:13386 NEK7 NIMA related kinase 7 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 NIMA (never in mitosis gene a)-related kinase 7 2001-12-19 2016-01-13 2016-01-13 140609 ENSG00000151414 OTTHUMG00000035658 uc001gun.5 AB062450 NM_133494 CCDS1394 Q8TDX7 11701951 MGI:1890645 RGD:1311160 NEK7 606848 PGOHUM00000296006 objectId:2122 +HGNC:13387 NEK8 NIMA related kinase 8 protein-coding gene gene with protein product Approved 17q11.1 17q11.1 NPHP9 NIMA (never in mitosis gene a)- related kinase 8 2004-10-20 2016-01-13 2016-01-13 284086 ENSG00000160602 OTTHUMG00000179454 uc002hcp.4 AY267371 XM_011524638 CCDS32597 Q86SG6 18199800 MGI:1890646 RGD:1306897 NEK8 609799 209484 objectId:2123 +HGNC:18591 NEK9 NIMA related kinase 9 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "Nek8|NERCC|DKFZp434D0935|MGC16714" NIMA (never in mitosis gene a)- related kinase 9 2002-05-08 2016-01-13 2016-10-05 91754 ENSG00000119638 OTTHUMG00000171768 uc001xrl.4 AY048580 NM_033116 CCDS9839 Q8TD19 11864968 MGI:2387995 RGD:1307187 NEK9 609798 461239 objectId:2124 +HGNC:18592 NEK10 NIMA related kinase 10 protein-coding gene gene with protein product Approved 3p24.1 03p24.1 FLJ32685 NIMA (never in mitosis gene a)- related kinase 10 2002-05-08 2016-01-13 2016-01-13 152110 ENSG00000163491 OTTHUMG00000130571 uc062hqb.1 "AK123061|AK057247" NM_152534 "CCDS46781|CCDS77713" Q6ZWH5 15289607 MGI:2685128 RGD:1564342 NEK10 objectId:2115 +HGNC:18593 NEK11 NIMA related kinase 11 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 FLJ23495 NIMA (never in mitosis gene a)- related kinase 11 2002-05-08 2016-01-13 2016-01-13 79858 ENSG00000114670 OTTHUMG00000159654 uc003eny.4 AK027148 NM_024800 "CCDS3069|CCDS46915|CCDS54639|CCDS82836|CCDS82837" Q8NG66 MGI:2442276 RGD:1308801 NEK11 609779 objectId:2116 +HGNC:12768 NELFA negative elongation factor complex member A protein-coding gene gene with protein product Approved 4p16.3 04p16.3 NELF-A WHSC2 Wolf-Hirschhorn syndrome candidate 2 1998-07-24 2013-01-31 2013-01-31 2015-08-25 7469 ENSG00000185049 OTTHUMG00000089967 uc003gem.4 AF101434 NM_005663 CCDS3358 Q9H3P2 10409432 MGI:1346098 RGD:1305556 606026 120525 +HGNC:24324 NELFB negative elongation factor complex member B protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "KIAA1182|NELF-B" COBRA1 cofactor of BRCA1 2008-02-21 2013-01-31 2013-01-31 2016-10-05 25920 ENSG00000188986 OTTHUMG00000131778 uc284qzh.1 AF464935 NM_015456 CCDS7040 Q8WX92 "11230166|10574461|17910036|17659869" MGI:1931035 RGD:1307832 611180 +HGNC:15934 NELFCD negative elongation factor complex member C/D protein-coding gene gene with protein product Approved 20q13.32 20q13.32 "HSPC130|TH1|NELF-C|NELF-D" trihydrophobin 1 TH1L "TH1-like (Drosophila homolog)|TH1-like (Drosophila)" 2001-07-31 2013-01-31 2013-01-31 2016-10-05 51497 ENSG00000101158 OTTHUMG00000032861 uc002yag.4 AF161479 NM_198976 CCDS13473 Q8IXH7 "11030415|11042152" MGI:1926424 RGD:1590753 605297 +HGNC:13974 NELFE negative elongation factor complex member E protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "RD|D6S45|NELF-E|RDP" RDBP "RD RNA-binding protein|RD RNA binding protein" RNA binding motif containing 725 2002-11-18 2013-01-31 2013-01-31 2016-10-05 7936 ENSG00000204356 OTTHUMG00000031046 uc003nyk.4 M33230 XM_006715205 CCDS4730 P18615 MGI:102744 RGD:1303325 154040 +HGNC:7750 NELL1 neural EGFL like 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "IDH3GL|FLJ45906" "nel (chicken)-like 1|NEL-like 1 (chicken)" 1996-07-17 2015-06-19 2015-08-25 4745 ENSG00000165973 OTTHUMG00000166042 uc001mqe.5 AK127805 NM_006157 "CCDS7855|CCDS44555|CCDS73267|CCDS73268" Q92832 "8975702|24563467" MGI:2443902 RGD:620998 NELL1 602319 +HGNC:7751 NELL2 neural EGFL like 2 protein-coding gene gene with protein product Approved 12q12 12q12 NRP2 "nel (chicken)-like 2|NEL-like 2 (chicken)" 1996-07-17 2015-06-19 2015-06-19 4753 ENSG00000184613 OTTHUMG00000169464 uc001rog.3 D83018 NM_006159 "CCDS8746|CCDS44863|CCDS44864|CCDS53781" Q99435 "8975702|25537860" MGI:1858510 RGD:620999 NELL2 602320 +HGNC:10663 NEMF nuclear export mediator factor protein-coding gene gene with protein product Approved 14q21.3 14q21.3 "NY-CO-1|FLJ10051" SDCCAG1 serologically defined colon cancer antigen 1 1999-02-09 2011-01-31 2011-01-31 2014-11-19 9147 ENSG00000165525 OTTHUMG00000170857 uc001wxc.4 AF039687 NM_004713 CCDS9694 O60524 "9610721|10575219" MGI:1918305 RGD:2315525 NEMF 608378 +HGNC:29001 NEMP1 nuclear envelope integral membrane protein 1 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 KIAA0286 "TMEM194|TMEM194A" "transmembrane protein 194|transmembrane protein 194A" 2007-11-15 2015-05-27 2015-05-27 2015-05-27 23306 ENSG00000166881 AB006624 NM_015257 "CCDS31841|CCDS44927" O14524 25946333 MGI:2446113 RGD:1587179 616496 +HGNC:33700 NEMP2 nuclear envelope integral membrane protein 2 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 TMEM194B transmembrane protein 194B 2007-11-15 2015-05-27 2015-05-27 2015-05-27 100131211 ENSG00000189362 OTTHUMG00000154454 XM_001723498 CCDS46476 A6NFY4 25946333 MGI:2444113 RGD:1560421 616497 +HGNC:30384 NENF neudesin neurotrophic factor protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "CIR2|SCIRP10|SPUF" neudesin neuron derived neurotrophic factor Membrane associated progesterone receptor family 1282 2005-07-26 2011-07-05 2014-11-18 29937 ENSG00000117691 OTTHUMG00000036744 uc001hjd.3 NM_013349 CCDS1505 Q9UMX5 "9771976|15605373" MGI:1913458 RGD:1303289 NENF 611874 +HGNC:50298 NENFP1 neudesin neurotrophic factor pseudogene 1 pseudogene pseudogene Approved 1p33 01p33 2014-04-04 2014-04-04 106480294 ENSG00000233647 OTTHUMG00000007990 NG_045764 PGOHUM00000244005 +HGNC:50299 NENFP2 neudesin neurotrophic factor pseudogene 2 pseudogene pseudogene Approved 12q23.2 12q23.2 2014-04-04 2014-04-04 100129880 ENSG00000258288 OTTHUMG00000170476 NG_009383 PGOHUM00000239908 +HGNC:50300 NENFP3 neudesin neurotrophic factor pseudogene 3 pseudogene pseudogene Approved 5p15.2 05p15.2 2014-04-04 2014-04-04 106481703 ENSG00000248462 OTTHUMG00000161748 NG_043236 PGOHUM00000235124 +HGNC:7754 NEO1 neogenin 1 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "NGN|HsT17534|IGDCC2|NTN1R2" immunoglobulin superfamily, DCC subclass, member 2 neogenin (chicken) homolog 1 "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 1996-10-26 2010-06-24 2016-10-05 4756 ENSG00000067141 OTTHUMG00000133509 uc059ldp.1 U61262 NM_002499 "CCDS10247|CCDS53957|CCDS58378" Q92859 9121761 MGI:1097159 RGD:619837 NEO1 601907 +HGNC:33184 NEPNP nephrocan, pseudogene pseudogene pseudogene Approved 6q22.1 06q22.1 "NPN|NEPN" 2010-03-12 2016-10-05 442253 ENSG00000218233 OTTHUMG00000015456 NG_008306 20210993 MGI:1913900 +HGNC:24496 NEPRO nucleolus and neural progenitor protein protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "DKFZP434F2021|NET17" C3orf17 chromosome 3 open reading frame 17 2005-01-10 2016-05-17 2016-05-17 2016-05-17 25871 ENSG00000163608 OTTHUMG00000159286 uc003dzr.4 AL117573 NM_015412 "CCDS33824|CCDS82820" Q6NW34 19906856 MGI:2384836 RGD:1311458 617089 +HGNC:7756 NES nestin protein-coding gene gene with protein product Approved 1q23.1 01q23.1 FLJ21841 Intermediate filaments Type IV 611 1999-01-22 2016-10-05 10763 ENSG00000132688 OTTHUMG00000034299 uc001fpq.4 X65964 NM_006617 CCDS1151 P48681 "1478958|9104587" MGI:101784 RGD:3162 NES 600915 HGNC:7756 +HGNC:14592 NET1 neuroepithelial cell transforming 1 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "ARHGEF8|NET1A" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2001-02-08 2008-09-12 2016-10-05 10276 ENSG00000173848 OTTHUMG00000017596 uc001iib.5 AJ010046 NM_005863 "CCDS7067|CCDS41483" Q7Z628 8649828 MGI:1927138 RGD:1305034 NET1 606450 +HGNC:13823 NETO1 neuropilin and tolloid like 1 protein-coding gene gene with protein product Approved 18q22.3 18q22.3 "BTCL1|BCTL1" neuropilin (NRP) and tolloid (TLL)-like 1 2001-04-05 2015-12-01 2016-10-05 81832 ENSG00000166342 OTTHUMG00000132834 uc002lkw.3 AF448838 NM_138999 "CCDS12000|CCDS42444" Q8TDF5 "11943477|12810072" MGI:2180216 RGD:1566269 NETO1 607973 +HGNC:14644 NETO2 neuropilin and tolloid like 2 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "FLJ10430|NEOT2" neuropilin (NRP) and tolloid (TLL)-like 2 2001-04-05 2015-12-01 2016-10-05 81831 ENSG00000171208 OTTHUMG00000133101 uc002eer.3 AK001292 NM_018092 "CCDS10727|CCDS58460" Q8NC67 11943477 MGI:1921763 RGD:1305310 NETO2 607974 +HGNC:7758 NEU1 neuraminidase 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 NEU "sialidase 1 (lysosomal sialidase)|neuraminidase 1 (lysosomal sialidase)" 2001-06-22 2016-07-01 2016-10-05 4758 ENSG00000204386 OTTHUMG00000031284 uc011ise.3 AF040958 NM_000434 CCDS4723 Q99519 9054950 MGI:97305 RGD:3163 NEU1 608272 123759 3.2.1.18 +HGNC:7759 NEU2 neuraminidase 2 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 SIAL2 N-acetyl-alpha-neuraminidase 2 "sialidase 2 (cytosolic sialidase)|neuraminidase 2 (cytosolic sialidase)" 1998-02-26 2016-07-01 2016-10-05 4759 ENSG00000115488 OTTHUMG00000133274 uc010zmn.2 Y16535 NM_005383 CCDS2501 Q9Y3R4 "10191093|14613940" MGI:1344417 RGD:3164 NEU2 605528 3.2.1.18 +HGNC:7760 NEU3 neuraminidase 3 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "sialidase 3 (membrane sialidase)|neuraminidase 3, membrane sialidase" 1999-08-12 2016-07-01 2016-07-01 10825 ENSG00000162139 OTTHUMG00000165518 uc001ovw.4 AB008185 NM_006656 CCDS44682 Q9UQ49 10405317 MGI:1355305 RGD:619881 NEU3 604617 3.2.1.18 +HGNC:21328 NEU4 neuraminidase 4 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "sialidase 4|neuraminidase 4 (sialidase)" 2003-09-16 2016-07-01 2016-07-01 129807 ENSG00000204099 OTTHUMG00000133412 uc032oxr.2 BC012899 NM_080741 "CCDS2553|CCDS54441|CCDS54442" Q8WWR8 MGI:2661364 RGD:1308624 NEU4 608527 3.2.1.18 +HGNC:7761 NEURL1 neuralized E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 10q24.33 10q24.33 "h-neu|RNF67|neu-1" NEURL "neuralized (Drosophila)-like|neuralized-like (Drosophila)|neuralized homolog (Drosophila)" Ring finger proteins 58 1999-02-09 2013-10-24 2013-10-24 2016-10-05 9148 ENSG00000107954 OTTHUMG00000018995 U87864 XM_011540331 CCDS7551 O76050 "9519875|20847082" MGI:1334263 RGD:1307021 603804 +HGNC:51220 NEURL1-AS1 NEURL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q24.33 10q24.33 2014-08-08 2014-08-08 102724341 ENSG00000235470 OTTHUMG00000018993 AA399019 NR_120675 +HGNC:35422 NEURL1B neuralized E3 ubiquitin protein ligase 1B protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "DKFZP761M1511|Neur2" neuralized homolog 1B (Drosophila) 2009-01-15 2013-10-24 2013-10-24 54492 ENSG00000214357 OTTHUMG00000163281 uc003mbt.4 NM_001142651 "CCDS47342|CCDS78085|CCDS83042" A8MQ27 17003037 MGI:3643092 RGD:1564984 NEURL1B 615893 +HGNC:16156 NEURL2 neuralized E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ337O18.6|FLJ30259|Ozz|Ozz-E3" C20orf163 "chromosome 20 open reading frame 163|neuralized-like 2 (Drosophila)|neuralized homolog 2 (Drosophila)" 2001-07-17 2004-02-27 2013-10-24 2015-08-25 140825 ENSG00000124257 OTTHUMG00000032626 uc002xqg.3 AL008726 NM_001278535 CCDS13384 Q9BR09 "12076535|19723503" MGI:3043305 RGD:1306409 NEURL2 608597 +HGNC:25162 NEURL3 neuralized E3 ubiquitin protein ligase 3 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "Lincr|LOC93082" neuralized homolog 3 (Drosophila) pseudogene 2009-01-12 2013-10-24 2014-11-18 93082 ENSG00000163121 OTTHUMG00000128645 uc010yup.3 NM_138397 "CCDS74541|CCDS74542" Q96EH8 15936721 MGI:2429944 RGD:1359633 NEURL3 +HGNC:34410 NEURL4 neuralized E3 ubiquitin protein ligase 4 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 KIAA1787 neuralized homolog 4 (Drosophila) 2009-01-15 2013-10-24 2016-10-05 84461 ENSG00000215041 OTTHUMG00000132319 uc002gga.2 NM_032442 "CCDS42251|CCDS42252" Q96JN8 "22261722|22441691" MGI:1921092 RGD:1308056 NEURL4 615865 +HGNC:7762 NEUROD1 neuronal differentiation 1 protein-coding gene gene with protein product Approved 2q31.3 02q31.3 "BETA2|BHF-1|NeuroD|bHLHa3|MODY6" "beta-cell E-box transactivator 2|neurogenic helix-loop-helix protein NEUROD" NEUROD neurogenic differentiation 1 Basic helix-loop-helix proteins 420 1996-03-12 2012-02-22 2016-10-05 4760 ENSG00000162992 OTTHUMG00000132583 uc002uof.5 U50823 NM_002500 CCDS2283 Q13562 "7754368|8786144" MGI:1339708 RGD:3165 NEUROD1 601724 123762 +HGNC:7763 NEUROD2 neuronal differentiation 2 protein-coding gene gene with protein product Approved 17q12 17q12 "NDRF|bHLHa1" neurogenic differentiation 2 Basic helix-loop-helix proteins 420 1997-04-10 2012-02-22 2014-11-19 4761 ENSG00000171532 OTTHUMG00000133211 uc002hry.4 U58681 NM_006160 CCDS11338 Q15784 9119405 MGI:107755 RGD:3166 NEUROD2 601725 +HGNC:13802 NEUROD4 neuronal differentiation 4 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "Atoh3|ATH-3|MATH-3|bHLHa4" neurogenic differentiation 4 Basic helix-loop-helix proteins 420 2000-11-28 2012-02-22 2015-08-25 58158 ENSG00000123307 OTTHUMG00000169826 uc001sgp.5 AF203901 NM_021191 CCDS8886 Q9HD90 MGI:108055 RGD:1310434 NEUROD4 611635 +HGNC:13804 NEUROD6 neuronal differentiation 6 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "Atoh2|NEX1M|Math-2|bHLHa2|Nex1" neurogenic differentiation 6 Basic helix-loop-helix proteins 420 2000-11-28 2012-02-22 2016-10-05 63974 ENSG00000164600 OTTHUMG00000022865 uc003tch.5 AF248954 NM_022728 CCDS5434 Q96NK8 12357074 MGI:106593 RGD:1562793 NEUROD6 611513 +HGNC:7764 NEUROG1 neurogenin 1 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "AKA|Math4C|ngn1|bHLHa6" neurogenic differentiation 3 NEUROD3 Basic helix-loop-helix proteins 420 1997-04-10 2016-10-05 4762 ENSG00000181965 OTTHUMG00000129138 uc003lax.3 U63842 NM_006161 CCDS4187 Q92886 9119405 MGI:107754 RGD:3167 NEUROG1 601726 +HGNC:13805 NEUROG2 neurogenin 2 protein-coding gene gene with protein product Approved 4q25 04q25 "Atoh4|Math4A|ngn-2|bHLHa8|NGN2" Basic helix-loop-helix proteins 420 2000-11-28 2014-11-19 63973 ENSG00000178403 OTTHUMG00000132907 uc003ias.3 AF303002 NM_024019 CCDS3698 Q9H2A3 MGI:109619 RGD:1309061 NEUROG2 606624 +HGNC:13806 NEUROG3 neurogenin 3 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "Atoh5|Math4B|ngn3|bHLHa7" Basic helix-loop-helix proteins 420 2000-11-28 2016-10-05 50674 ENSG00000122859 OTTHUMG00000018391 uc001jpp.4 AJ133776 NM_020999 CCDS31212 Q9Y4Z2 "9000438|10677506" MGI:893591 RGD:631350 NEUROG3 604882 123767 +HGNC:29557 NEXN nexilin F-actin binding protein protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "nexilin|NELIN" nexilin (F actin binding protein) I-set domain containing 593 2004-01-09 2016-03-30 2016-10-12 91624 ENSG00000162614 OTTHUMG00000040533 uc001dic.5 AK057954 NM_144573 "CCDS41351|CCDS53335" Q0ZGT2 "12053183|8227983" MGI:1916060 RGD:708354 LRG_442|http://www.lrg-sequence.org/LRG/LRG_442 NEXN 613121 225306 +HGNC:31983 NEXN-AS1 NEXN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 FLJ90637 C1orf118 "chromosome 1 open reading frame 118|NEXN antisense RNA 1 (non-protein coding)" 2005-06-16 2011-08-30 2012-08-15 2014-11-19 374987 ENSG00000235927 OTTHUMG00000040531 uc031uek.1 AK075118 NM_199343 Q8NBZ9 +HGNC:7765 NF1 neurofibromin 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "neurofibromatosis|von Recklinghausen disease|Watson disease" 1986-01-01 2008-07-31 2016-10-12 4763 ENSG00000196712 OTTHUMG00000132871 uc002hgh.3 NM_000267 "CCDS11264|CCDS42292|CCDS45645" P21359 1715669 MGI:97306 RGD:3168 "LOVD - Mendelian genes|http://grenada.lumc.nl/LOVD2/mendelian_genes/home.php?select_db=NF1|LRG_214|http://www.lrg-sequence.org/LRG/LRG_214" NF1 613113 123772 +HGNC:7768 NF1L3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-05-28 +HGNC:7772 NF1P1 neurofibromin 1 pseudogene 1 pseudogene pseudogene Approved 15q11.2 15q11.2 NF1HHS Albright osteodystrophy 1992-04-06 2008-07-31 2015-05-18 100419006 ENSG00000270831 OTTHUMG00000184188 U35691 NG_025283 "1505963|8264676|8825634" PGOHUM00000292802 +HGNC:38664 NF1P2 neurofibromin 1 pseudogene 2 pseudogene pseudogene Approved 15q11.2 15q11.2 2010-07-07 2015-05-18 440225 ENSG00000258997 OTTHUMG00000171730 M84131 NR_028506 PGOHUM00000292824 +HGNC:7766 NF1P3 neurofibromin 1 pseudogene 3 pseudogene pseudogene Approved 21q11.2 21q11.2 NF1L1 "neurofibromin 1-like 1|neurofibromin 1-like 1 (pseudogene)" 1993-11-05 2010-10-21 2010-10-21 2015-05-18 4764 ENSG00000183249 OTTHUMG00000074232 D26141 NG_009867 "7926815|10830953" PGOHUM00000297347 +HGNC:7769 NF1P4 neurofibromin 1 pseudogene 4 pseudogene pseudogene Approved 14q11.2 14q11.2 NF1L4 neurofibromin 1-like 4 1995-07-14 2010-10-21 2010-10-21 2015-05-18 100419029 ENSG00000258027 OTTHUMG00000170544 U35690 NG_007891 8825634 PGOHUM00000292555 +HGNC:7770 NF1P5 neurofibromin 1 pseudogene 5 pseudogene pseudogene Approved 18p11.21 18p11.21 NF1L5 neurofibromin 1-like 5 1995-07-14 2010-10-21 2010-10-21 2015-05-18 4768 ENSG00000175319 OTTHUMG00000182061 "U35689|U35688" NG_007889 8825634 PGOHUM00000294600 +HGNC:7771 NF1P6 neurofibromin 1 pseudogene 6 pseudogene pseudogene Approved 22q11.1 22q11.1 Em:AP000532.C22.1 NF1L6 neurofibromin 1-like 6 1995-07-14 2010-10-21 2010-10-21 2015-05-18 644637 ENSG00000224435 OTTHUMG00000140337 U35692 NG_007890 8825634 PGOHUM00000297418 +HGNC:34230 NF1P7 neurofibromin 1 pseudogene 7 pseudogene pseudogene Approved 14q11.2 14q11.2 NF1L7 neurofibromin 1-like 7 2008-05-29 2010-10-21 2010-10-21 2015-05-18 100158257 ENSG00000278143 OTTHUMG00000170303 NG_007892 PGOHUM00000292263 +HGNC:7767 NF1P8 neurofibromin 1 pseudogene 8 pseudogene pseudogene Approved 2q21.1 02q21.1 NF1L2 neurofibromin 1-like 2 1995-07-14 2010-10-21 2010-10-21 2016-10-05 401007 ENSG00000236956 OTTHUMG00000153537 U35697 NG_007888 8825634 PGOHUM00000298123 +HGNC:51736 NF1P9 neurofibromin 1 pseudogene 9 pseudogene pseudogene Approved 15q11.2 15q11.2 2015-05-18 2015-05-18 101930150 ENSG00000281347 OTTHUMG00000190195 PGOHUM00000292813 +HGNC:51737 NF1P10 neurofibromin 1 pseudogene 10 pseudogene pseudogene Approved 14q11.2 14q11.2 2015-05-18 2015-05-18 106480348 ENSG00000277529 OTTHUMG00000188378 NG_045928 PGOHUM00000306529 +HGNC:51738 NF1P11 neurofibromin 1 pseudogene 11 pseudogene pseudogene Approved 14q11.2 14q11.2 2015-05-18 2015-05-18 106481736 ENSG00000278184 OTTHUMG00000188370 NG_045475 PGOHUM00000292558 +HGNC:51739 NF1P12 neurofibromin 1 pseudogene 12 pseudogene pseudogene Approved 12q12 12q12 2015-05-18 2015-05-18 100418983 ENSG00000258360 OTTHUMG00000169416 NG_023997 PGOHUM00000291297 +HGNC:7773 NF2 neurofibromin 2 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "merlin|ACN|SCH|BANF" "moesin-ezrin-radixin like|schwannomin" "neurofibromin 2 (bilateral acoustic neuroma)|neurofibromin 2 (merlin)" "A-kinase anchoring proteins|FERM domain containing" "396|1293" 1992-01-01 2016-07-04 2016-10-12 4771 ENSG00000186575 OTTHUMG00000030727 uc003age.5 L11353 NM_000268 "CCDS13861|CCDS13862|CCDS13863|CCDS13864|CCDS13865|CCDS54516" P35240 10591208 MGI:97307 RGD:3169 "Neurofibromatosis 2 (NF2) mutation database|http://www.hgmd.cf.ac.uk/nf2/|LRG_511|http://www.lrg-sequence.org/LRG/LRG_511" NF2 607379 123774 +HGNC:29872 NFAM1 NFAT activating protein with ITAM motif 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 CNAIP 2005-02-01 2014-11-19 150372 ENSG00000235568 OTTHUMG00000150923 uc003bcn.5 BC038241 NM_145912 CCDS14034 Q8NET5 12615919 MGI:1921289 RGD:1308316 NFAM1 608740 +HGNC:29866 NFASC neurofascin protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "NRCAML|KIAA0756|FLJ46866|NF" neurofascin homolog (chicken) "Fibronectin type III domain containing|I-set domain containing" "555|593" 2005-11-22 2010-06-24 2014-11-19 23114 ENSG00000163531 OTTHUMG00000151697 uc001hbi.4 AK027553 NM_001005388 "CCDS30982|CCDS53460|CCDS53461|CCDS53462" O94856 "1377696|8672144" MGI:104753 RGD:620911 NFASC 609145 +HGNC:7774 NFAT5 nuclear factor of activated T-cells 5 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "TONEBP|KIAA0827|NFATL1|OREBP|NFATZ|NF-AT5" tonicity-responsive enhancer binding protein nuclear factor of activated T-cells 5, tonicity-responsive Nuclear factors of activated T-cells 665 1999-07-16 2016-07-15 2016-07-15 10725 ENSG00000102908 OTTHUMG00000137572 uc002exl.3 AF134870 NM_138714 "CCDS10881|CCDS10882|CCDS45519|CCDS45518" O94916 10377394 MGI:1859333 RGD:1309142 NFAT5 604708 +HGNC:7775 NFATC1 nuclear factor of activated T-cells 1 protein-coding gene gene with protein product Approved 18q23 18q23 "NF-ATC|NFATc|NFAT2" nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 Nuclear factors of activated T-cells 665 1994-11-16 2016-03-21 2016-03-21 4772 ENSG00000131196 OTTHUMG00000132897 uc002lnd.4 U08015 NM_172390 "CCDS12015|CCDS12016|CCDS32850|CCDS59326|CCDS59327|CCDS62467|CCDS62468|CCDS62469|CCDS62470|CCDS62471" O95644 8202141 MGI:102469 RGD:2319357 NFATC1 600489 +HGNC:7776 NFATC2 nuclear factor of activated T-cells 2 protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "NF-ATP|NFATp|NFAT1" nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 Nuclear factors of activated T-cells 665 1994-11-16 2016-03-21 2016-03-21 4773 ENSG00000101096 OTTHUMG00000032747 uc002xwd.4 "U43342|U43341" NM_012340 "CCDS13437|CCDS33488|CCDS46614|CCDS68156|CCDS68157" Q13469 8202141 MGI:102463 RGD:1307690 NFATC2 600490 +HGNC:25906 NFATC2IP nuclear factor of activated T-cells 2 interacting protein protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "FLJ14639|NIP45|RAD60|ESC2" nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 interacting protein 2005-01-11 2016-03-21 2016-03-21 84901 ENSG00000176953 OTTHUMG00000097763 uc002dru.4 AK074761 NM_032815 CCDS10645 Q8NCF5 15698469 MGI:1329015 RGD:1359096 NFATC2IP 614525 +HGNC:7777 NFATC3 nuclear factor of activated T-cells 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "NFAT4|NFATX" nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 3 Nuclear factors of activated T-cells 665 1994-11-16 2016-03-21 2016-10-05 4775 ENSG00000072736 OTTHUMG00000137555 uc002evo.3 L41067 NM_004555 "CCDS10860|CCDS10861|CCDS10862" Q12968 7749981 MGI:103296 RGD:1308692 NFATC3 602698 +HGNC:7778 NFATC4 nuclear factor of activated T-cells 4 protein-coding gene gene with protein product Approved 14q12 14q12 NFAT3 nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4 Nuclear factors of activated T-cells 665 1994-11-16 2016-03-21 2016-10-05 4776 ENSG00000100968 OTTHUMG00000029351 uc001wpc.5 BC053855 NM_004554 "CCDS9629|CCDS45089|CCDS55909|CCDS55910|CCDS55911|CCDS73625" Q14934 7749981 MGI:1920431 RGD:1310749 NFATC4 602699 +HGNC:7779 NFATC5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7780 NFE2 nuclear factor, erythroid 2 protein-coding gene gene with protein product Approved 12q13 12q13 NF-E2 "nuclear factor (erythroid-derived 2), 45kD|nuclear factor (erythroid-derived 2), 45kDa" Basic leucine zipper proteins 506 1993-11-03 2013-08-23 2015-08-25 4778 ENSG00000123405 OTTHUMG00000169761 uc001sfr.6 BC005044 NM_006163 CCDS8876 Q16621 8355703 MGI:97308 RGD:1306888 NFE2 601490 +HGNC:7781 NFE2L1 nuclear factor, erythroid 2 like 1 protein-coding gene gene with protein product Approved 17q21.3 17q21.3 "NRF1|LCR-F1|FLJ00380" TCF11 "nuclear factor (erythroid-derived 2)-like 1|nuclear factor, erythroid 2-like 1" Basic leucine zipper proteins 506 1994-03-24 2015-11-18 2015-11-18 4779 ENSG00000082641 OTTHUMG00000178706 uc002imz.5 AK090459 NM_003204 "CCDS11524|CCDS82150|CCDS82151" Q14494 "8248256|9501099" MGI:99421 RGD:1311972 NFE2L1 163260 +HGNC:7782 NFE2L2 nuclear factor, erythroid 2 like 2 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 NRF2 NF-E2-related factor 2 "nuclear factor (erythroid-derived 2)-like 2|nuclear factor, erythroid 2-like 2" Basic leucine zipper proteins 506 1994-03-24 2015-11-18 2016-10-05 4780 ENSG00000116044 OTTHUMG00000133620 uc061qac.1 NM_006164 "CCDS42782|CCDS46457|CCDS46458" Q16236 7937919 MGI:108420 RGD:620360 NFE2L2 600492 +HGNC:7783 NFE2L3 nuclear factor, erythroid 2 like 3 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 Nrf3 "nuclear factor (erythroid-derived 2)-like 3|nuclear factor, erythroid 2-like 3" Basic leucine zipper proteins 506 1999-06-03 2015-11-18 2015-11-18 9603 ENSG00000050344 OTTHUMG00000023882 uc003sxq.4 AB010812 NM_004289 CCDS5396 Q9Y4A8 10037736 MGI:1339958 RGD:1307730 NFE2L3 604135 +HGNC:22278 NFE2L3P1 nuclear factor, erythroid 2 like 3 pseudogene 1 pseudogene pseudogene Approved 18q21.32 18q21.32 "nuclear factor (erythroid-derived 2)-like 3 pseudogene 1|nuclear factor, erythroid 2-like 3 pseudogene 1" 2010-09-30 2015-11-18 2015-11-18 642996 ENSG00000267497 OTTHUMG00000179951 NG_011711 +HGNC:44191 NFE2L3P2 nuclear factor, erythroid 2 like 3 pseudogene 2 pseudogene pseudogene Approved 17q21.32 17q21.32 "nuclear factor (erythroid-derived 2)-like 3 pseudogene 2|nuclear factor, erythroid 2-like 3 pseudogene 2" 2012-06-30 2015-11-18 2015-11-18 100272146 NG_029197 PGOHUM00000237425 +HGNC:29902 NFE4 nuclear factor, erythroid 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 NF-E4 2013-08-23 2014-11-18 58160 ENSG00000230257 OTTHUMG00000157208 NM_001085386 Q86UQ8 11003662 612133 +HGNC:7784 NFIA nuclear factor I A protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "NFI-L|KIAA1439" nuclear factor I/A 1995-03-09 2016-04-06 2016-10-05 4774 ENSG00000162599 OTTHUMG00000008618 uc001czw.4 U07809 NM_005595 "CCDS615|CCDS44156|CCDS53322|CCDS53321" Q12857 7590749 MGI:108056 RGD:3170 NFIA 600727 409843 +HGNC:40402 NFIA-AS1 NFIA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p31.3 01p31.3 RP5-833A20.1 2014-05-21 2014-11-19 645030 ENSG00000237853 OTTHUMG00000040631 NR_104180 25265644 +HGNC:40401 NFIA-AS2 NFIA antisense RNA 2 non-coding RNA RNA, long non-coding Approved 1p31.3 01p31.3 2014-05-21 2014-11-19 100996570 ENSG00000237928 OTTHUMG00000008421 NR_110618 +HGNC:7785 NFIB nuclear factor I B protein-coding gene gene with protein product Approved 9p23-p22.3 09p23-p22.3 "NFI-RED|NFIB2|NFIB3" nuclear factor I/B 1995-03-09 2016-04-06 2016-10-11 4781 ENSG00000147862 OTTHUMG00000021027 uc003zle.4 U07810 NM_005596 "CCDS6474|CCDS55291|CCDS55292|CCDS65007" O00712 7590749 MGI:103188 RGD:62015 NFIB 600728 +HGNC:7786 NFIC nuclear factor I C protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "CTF|NF-I|CTF5" CCAAT-binding transcription factor NFI nuclear factor I/C (CCAAT-binding transcription factor) 1993-12-15 2016-04-06 2016-04-06 4782 ENSG00000141905 OTTHUMG00000180731 uc002lxp.4 X12492 NM_005597 "CCDS12107|CCDS45914|CCDS58640|CCDS59330|CCDS59331" P08651 "3398920|7590749" MGI:109591 RGD:62016 NFIC 600729 +HGNC:7787 NFIL3 nuclear factor, interleukin 3 regulated protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "E4BP4|NFIL3A|NF-IL3A" IL3BP1 Basic leucine zipper proteins 506 1995-02-13 2016-10-05 4783 ENSG00000165030 OTTHUMG00000020209 uc004arh.3 X64318 NM_005384 CCDS6690 Q16649 "7565758|1620116" MGI:109495 RGD:620972 NFIL3 605327 +HGNC:7788 NFIX nuclear factor I X protein-coding gene gene with protein product Approved 19p13.13 19p13.13 NF1A CCAAT-binding transcription factor nuclear factor I/X (CCAAT-binding transcription factor) 1993-11-03 2016-04-06 2016-04-06 4784 ENSG00000008441 OTTHUMG00000180726 uc002mwd.4 U18761 NM_002501 "CCDS45996|CCDS59359" Q14938 "8340106|7590749" MGI:97311 RGD:69080 NFIX 164005 239888 +HGNC:7789 NFIXL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7790 NFIXL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7791 NFIXL3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7792 NFIXL4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7793 NFIXL5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7794 NFKB1 nuclear factor kappa B subunit 1 protein-coding gene gene with protein product Approved 4q24 04q24 "KBF1|p105|NFKB-p50|p50|NF-kappaB|NFkappaB|NF-kB1" nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 "Ankyrin repeat domain containing|NF-kappa B complex subunits" "403|1254" 1991-11-14 2016-04-29 2016-04-29 4790 ENSG00000109320 OTTHUMG00000161080 uc011cep.2 M58603 NM_003998 "CCDS3657|CCDS54783" P19838 1992489 MGI:97312 RGD:70498 NFKB1 164011 438054 +HGNC:7795 NFKB2 nuclear factor kappa B subunit 2 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "LYT-10|p52|p105|NF-kB2|p49/p100" nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) "Ankyrin repeat domain containing|NF-kappa B complex subunits" "403|1254" 1991-11-14 2016-04-29 2016-10-05 4791 ENSG00000077150 OTTHUMG00000018962 uc001kvb.6 X61498 NM_001322934 "CCDS41564|CCDS41565" Q00653 1876189 MGI:1099800 RGD:1307189 NFKB2 164012 371170 +HGNC:7797 NFKBIA NFKB inhibitor alpha protein-coding gene gene with protein product Approved 14q13.2 14q13.2 "IKBA|MAD-3|IkappaBalpha" NF-kappa-B inhibitor alpha NFKBI nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha Ankyrin repeat domain containing 403 1992-02-13 2016-02-25 2016-10-12 4792 ENSG00000100906 OTTHUMG00000140220 uc001wtf.5 NM_020529 CCDS9656 P25963 1829648 MGI:104741 RGD:3171 "NFKBIAbase: Mutation registry for Autosomal dominant anhidrotic ectodermal dysplasia and T-cell immunodeficiency|http://structure.bmc.lu.se/idbase/NFKBIAbase/|LRG_89|http://www.lrg-sequence.org/LRG/LRG_89" NFKBIA 164008 159788 +HGNC:7798 NFKBIB NFKB inhibitor beta protein-coding gene gene with protein product Approved 19q13.1 19q13.1 "IKBB|TRIP9" NF-kappa-B inhibitor beta nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta Ankyrin repeat domain containing 403 1997-07-01 2016-02-25 2016-02-25 4793 ENSG00000104825 OTTHUMG00000177631 uc002ojw.4 L40407 NM_002503 "CCDS12524|CCDS74362" Q15653 9763672 MGI:104752 RGD:621887 NFKBIB 604495 +HGNC:15671 NFKBID NFKB inhibitor delta protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "TA-NFKBH|IkappaBNS" NF-kappa-B inhibitor delta nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, delta Ankyrin repeat domain containing 403 2008-04-10 2016-02-25 2016-02-25 84807 ENSG00000167604 OTTHUMG00000180760 uc060xkk.1 AF385434 NM_032721 CCDS42552 Q8NI38 12477932 MGI:3041243 RGD:1308055 NFKBID +HGNC:7799 NFKBIE NFKB inhibitor epsilon protein-coding gene gene with protein product Approved 6p21.1 06p21.1 IKBE NF-kappa-B inhibitor epsilon nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon Ankyrin repeat domain containing 403 1997-07-01 2016-02-25 2016-02-25 4794 ENSG00000146232 OTTHUMG00000014762 uc003oxe.1 U91616 NM_004556 CCDS34463 O00221 9135156 MGI:1194908 RGD:735070 NFKBIE 604548 +HGNC:7800 NFKBIL1 NFKB inhibitor like 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 IKBL NF-kappa-B inhibitor-like protein 1 NFKBIL nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 1994-09-12 2016-02-25 2016-10-05 4795 ENSG00000204498 OTTHUMG00000031038 uc003nub.4 X77909 NM_005007 "CCDS4700|CCDS47399|CCDS47400" Q9UBC1 8081366 MGI:1340031 RGD:1303310 NFKBIL1 601022 +HGNC:29805 NFKBIZ NFKB inhibitor zeta protein-coding gene gene with protein product Approved 3q12.3 03q12.3 "MAIL|FLJ34463|INAP" "IL-1 inducible nuclear ankyrin-repeat protein|NF-kappa-B inhibitor zeta" nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, zeta Ankyrin repeat domain containing 403 2004-09-29 2016-02-25 2016-10-05 64332 ENSG00000144802 OTTHUMG00000159194 uc003dvp.4 AF548362 NM_031419 "CCDS2946|CCDS43123" Q9BYH8 "12565889|16513645" MGI:1931595 RGD:1310834 NFKBIZ 608004 +HGNC:7802 NFRKB nuclear factor related to kappaB binding protein protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "DKFZp547B2013|INO80G" "nuclear factor related to kappa B binding protein|DNA-binding protein R kappa B|INO80 complex subunit G" INO80 complex 595 1992-06-22 2016-10-05 4798 ENSG00000170322 OTTHUMG00000165761 uc058jbv.1 NM_006165 "CCDS8483|CCDS44770" Q6P4R8 1427843 MGI:2442410 RGD:1310558 NFRKB 164013 +HGNC:15910 NFS1 NFS1, cysteine desulfurase protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "NifS|IscS" "nitrogen fixation 1 (S. cerevisiae, homolog)|NFS1 nitrogen fixation 1 homolog (S. cerevisiae)" 2001-08-01 2016-08-10 2016-08-10 9054 ENSG00000244005 OTTHUMG00000032361 uc002xdw.3 AF097025 NM_021100 "CCDS13262|CCDS56185" Q9Y697 "9885568|16847322" MGI:1316706 RGD:620912 NFS1 603485 400611 2.8.1.7 +HGNC:16287 NFU1 NFU1 iron-sulfur cluster scaffold protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "CGI-33|NifU|NIFUC" HIRIP5 "HIRA interacting protein 5|NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae)" 2001-10-30 2006-10-24 2014-07-03 2016-10-05 27247 ENSG00000169599 OTTHUMG00000152668 uc002sfk.4 AJ132584 NM_015700 "CCDS33217|CCDS42694|CCDS46315" Q9UMS0 "11342215|12886008" MGI:1913290 RGD:1307823 NFU1 608100 289576 +HGNC:44553 NFU1P1 NFU1 iron-sulfur cluster scaffold pseudogene 1 pseudogene pseudogene Approved 3p22.1 03p22.1 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) pseudogene 1 2012-11-15 2014-07-03 2014-07-03 100132681 ENSG00000230757 OTTHUMG00000156282 NG_022247 PGOHUM00000238002 +HGNC:44554 NFU1P2 NFU1 iron-sulfur cluster scaffold pseudogene 2 pseudogene pseudogene Approved 1p21.3 01p21.3 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) pseudogene 2 2012-11-15 2014-07-03 2014-07-03 100132699 ENSG00000233557 OTTHUMG00000010679 NG_022795 PGOHUM00000244809 +HGNC:7803 NFX1 nuclear transcription factor, X-box binding 1 protein-coding gene gene with protein product Approved 9p12 09p12 "NFX2|MGC20369|Tex42|TEG-42" PHD finger proteins 88 1998-05-26 2014-11-19 4799 ENSG00000086102 OTTHUMG00000019772 uc003zsq.4 U19759 XR_001746310 "CCDS6538|CCDS6540" Q12986 "7964459|2511169" MGI:1921414 RGD:1310277 NFX1 603255 +HGNC:18726 NFXL1 nuclear transcription factor, X-box binding like 1 protein-coding gene gene with protein product Approved 4p12 04p12 HOZFP ovarian zinc finger protein 2002-06-05 2016-02-29 2016-02-29 152518 ENSG00000170448 OTTHUMG00000128621 uc010igi.4 AY134856 NM_152995 CCDS3478 Q6ZNB6 MGI:1923646 RGD:1359201 NFXL1 460881 +HGNC:7804 NFYA nuclear transcription factor Y subunit alpha protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "HAP2|CBF-B|NF-YA" nuclear transcription factor Y, alpha 1991-11-08 2015-11-11 2016-10-05 4800 ENSG00000001167 OTTHUMG00000014669 uc003opo.4 NM_002505 "CCDS4849|CCDS4850" P23511 "1774067|9612081" MGI:97316 RGD:70976 NFYA 189903 +HGNC:34078 NFYAP1 nuclear transcription factor Y subunit alpha pseudogene 1 pseudogene pseudogene Approved 13q21.31 13q21.31 NFYAP "nuclear transcription factor Y, alpha pseudogene|nuclear transcription factor Y, alpha pseudogene 1" 2008-04-18 2010-02-26 2015-11-11 2015-11-11 100130677 ENSG00000237849 OTTHUMG00000017027 NG_007867 +HGNC:7805 NFYB nuclear transcription factor Y subunit beta protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "CBF-A|HAP3|NF-YB" nuclear transcription factor Y, beta 1991-11-08 2015-11-11 2015-11-11 4801 ENSG00000120837 OTTHUMG00000170176 uc001tkl.2 XM_005268908 CCDS9098 P25208 "1774067|9612081" MGI:97317 RGD:3172 NFYB 189904 +HGNC:7806 NFYC nuclear transcription factor Y subunit gamma protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "CBF-C|NF-YC" nuclear transcription factor Y, gamma 1996-10-26 2015-11-11 2016-10-05 4802 ENSG00000066136 OTTHUMG00000007729 uc009vwd.5 U78774 NM_014223 "CCDS455|CCDS44120|CCDS44121|CCDS44122|CCDS44123|CCDS81305|CCDS81306" Q13952 "8921405|9249075" MGI:107901 RGD:3173 NFYC 605344 +HGNC:49451 NFYC-AS1 NFYC antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p34.2 01p34.2 0808y08y 2013-12-03 2013-12-03 100130557 ENSG00000272145 OTTHUMG00000185712 NR_024567 +HGNC:14077 NGB neuroglobin protein-coding gene gene with protein product Approved 14q24.3 14q24.3 2000-11-28 2014-06-13 58157 ENSG00000165553 OTTHUMG00000171558 uc001xtg.2 AJ245946 NM_021257 CCDS9856 Q9NPG2 "11029004|17210637" MGI:2151886 RGD:621461 NGB 605304 +HGNC:20271 NGDN neuroguidin protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "DKFZP564O092|LCP5|lpd-2|NGD|CANu1" C14orf120 "chromosome 14 open reading frame 120|neuroguidin, EIF4E binding protein" 2003-01-17 2006-08-02 2015-11-23 2015-11-23 25983 ENSG00000129460 OTTHUMG00000171501 uc001wjz.4 AK022215 NM_001042635 "CCDS32051|CCDS41926" Q8NEJ9 16705177 MGI:1916216 RGD:1310211 NGDN 610777 +HGNC:7807 NGEF neuronal guanine nucleotide exchange factor protein-coding gene gene with protein product Approved 2q37.1 02q37.1 ARHGEF27 ephexin Rho guanine nucleotide exchange factors 722 1999-11-16 2016-10-05 25791 ENSG00000066248 OTTHUMG00000133272 uc002vts.3 AJ238899 XM_044799 "CCDS2500|CCDS46544" Q8N5V2 10777665 MGI:1858414 RGD:1309055 NGEF 605991 +HGNC:7808 NGF nerve growth factor protein-coding gene gene with protein product Approved 1p13.2 01p13.2 NGFB nerve growth factor (beta polypeptide) Endogenous ligands 542 2001-06-22 2008-02-07 2016-03-09 2016-10-12 4803 ENSG00000134259 OTTHUMG00000011880 uc001efu.2 NM_002506 CCDS882 P01138 MGI:97321 RGD:1598328 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_260|http://www.lrg-sequence.org/LRG/LRG_260" NGF 162030 123777 +HGNC:7809 NGFR nerve growth factor receptor protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "TNFRSF16|CD271|p75NTR" "low affinity nerve growth factor receptor|TNFR superfamily, member 16" nerve growth factor receptor (TNFR superfamily, member 16) "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 2001-06-22 2010-04-28 2016-10-05 4804 ENSG00000064300 OTTHUMG00000161495 uc002ioz.5 M14764 NM_002507 CCDS11549 P08138 "3022937|3006050" MGI:97323 RGD:3177 NGFR 162010 objectId:1888 CD271 +HGNC:17646 NGLY1 N-glycanase 1 protein-coding gene gene with protein product Approved 3p24.2 03p24.2 "FLJ11005|PNG1" peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase 2002-06-07 2016-10-05 55768 ENSG00000151092 OTTHUMG00000155600 uc003cdl.4 AF250924 XM_017006839 "CCDS33719|CCDS46777|CCDS46778|CCDS46779" Q96IV0 MGI:1913276 RGD:1308518 NGLY1 610661 406885 3.5.1.52 +HGNC:18077 NGRN neugrin, neurite outgrowth associated protein-coding gene gene with protein product Approved 15q26.1 15q26.1 DSC92 2005-07-25 2014-11-19 51335 ENSG00000182768 OTTHUMG00000149807 uc002bpf.2 AB029315 NR_028052 CCDS32329 Q9NPE2 11118320 MGI:1933212 RGD:1583734 NGRN 616718 +HGNC:7811 NHCP1 non-histone chromosome protein 1 other unknown Approved 16 16 2001-06-22 2013-03-27 4805 118870 +HGNC:7812 NHCP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:25737 NHEJ1 non-homologous end joining factor 1 protein-coding gene gene with protein product Approved 2q35 02q35 "Cernunnos|XLF|FLJ12610" nonhomologous end-joining factor 1 2006-03-30 2015-11-18 2016-10-12 79840 ENSG00000187736 OTTHUMG00000133127 uc002vjp.5 AJ972687 NM_024782 CCDS2432 Q9H9Q4 "16439204|16439205" MGI:1922820 RGD:1359338 "NHEJ1base: Mutation registry for Combined immunodeficiency (CID) associated with microcephaly and increased cellular sensitivity to IR|http://structure.bmc.lu.se/idbase/NHEJ1base/|LRG_90|http://www.lrg-sequence.org/LRG/LRG_90" NHEJ1 611290 159501 +HGNC:7817 NHLH1 nescient helix-loop-helix 1 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "NSCL|NSCL1|bHLHa35" HEN1 nescient helix loop helix 1 Basic helix-loop-helix proteins 420 1992-07-08 2015-11-11 2016-10-05 4807 ENSG00000171786 OTTHUMG00000033121 uc001fwa.3 BC013789 NM_005598 CCDS1204 Q02575 MGI:98481 RGD:1310261 NHLH1 162360 +HGNC:7818 NHLH2 nescient helix-loop-helix 2 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 "NSCL2|bHLHa34" HEN2 nescient helix loop helix 2 Basic helix-loop-helix proteins 420 1992-07-08 2015-11-11 2016-10-05 4808 ENSG00000177551 OTTHUMG00000011969 uc057jrm.1 NM_005599 CCDS885 Q02577 1528853 MGI:97324 RGD:1308294 NHLH2 162361 +HGNC:21576 NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "bA204B7.2|EPM2B|malin" epilepsy, progressive myoclonus type 2B NHL repeat containing 1 2003-10-06 2013-12-12 2014-11-19 378884 ENSG00000187566 OTTHUMG00000014315 uc003ncl.2 AY324849 NM_198586 CCDS4542 Q6VVB1 12958597 MGI:2145264 RGD:735081 NHLRC1 608072 123779 +HGNC:24731 NHLRC2 NHL repeat containing 2 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "FLJ25621|FLJ20147|FLJ33312|MGC45492|DKFZp779F115" 2004-05-27 2016-10-05 374354 ENSG00000196865 OTTHUMG00000019078 uc001lax.3 AK090631 NM_198514 CCDS7585 Q8NBF2 12477932 MGI:1914116 RGD:1307348 NHLRC2 +HGNC:33751 NHLRC3 NHL repeat containing 3 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 2007-12-18 2015-08-25 387921 ENSG00000188811 OTTHUMG00000016765 uc001uxc.5 NM_001012754 "CCDS31961|CCDS31962" Q5JS37 MGI:2444520 RGD:1565414 NHLRC3 +HGNC:26700 NHLRC4 NHL repeat containing 4 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 2009-10-08 2015-08-25 283948 ENSG00000257108 OTTHUMG00000047857 uc021szs.3 NM_176677 CCDS45366 P0CG21 12477932 MGI:3687200 RGD:6503435 NHLRC4 +HGNC:14377 NHP2 NHP2 ribonucleoprotein protein-coding gene gene with protein product Approved 5q35.3 05q35.3 FLJ20479 NOLA2 "nucleolar protein family A, member 2 (H/ACA small nucleolar RNPs)|NHP2 ribonucleoprotein homolog (yeast)" H/ACA ribonucleoprotein complex 1221 2001-02-06 2008-10-13 2012-12-10 2016-10-12 55651 ENSG00000145912 OTTHUMG00000130886 uc003mir.4 AF161404 NM_017838 "CCDS4432|CCDS34308" Q9NX24 11074001 MGI:1098547 LRG_346|http://www.lrg-sequence.org/LRG/LRG_346 NHP2 606470 205594 +HGNC:23582 NHP2P1 NHP2 ribonucleoprotein pseudogene 1 pseudogene pseudogene Approved 10q23.32 10q23.32 bA360G10.4 NOLA2P1 "nucleolar protein family A, member 2 pseudogene 1|NHP2 ribonucleoprotein homolog (yeast) pseudogene 1" 2004-05-27 2008-10-13 2012-12-10 2014-11-18 414200 ENSG00000105988 OTTHUMG00000018755 NG_005297 +HGNC:22797 NHP2P2 NHP2 ribonucleoprotein pseudogene 2 pseudogene pseudogene Approved 7p15.2 07p15.2 TCAG_30283 NHP2 ribonucleoprotein homolog (yeast) pseudogene 2 2010-06-17 2012-12-10 2014-11-18 442290 ENSG00000213786 OTTHUMG00000033542 NG_005298 PGOHUM00000233158 +HGNC:7820 NHS NHS actin remodeling regulator protein-coding gene gene with protein product Approved Xp22.2-p22.13 Xp22.2-p22.13 Nance-Horan syndrome (congenital cataracts and dental anomalies) 1989-06-30 2015-11-18 2016-10-11 4810 ENSG00000188158 OTTHUMG00000022799 uc004cxx.4 NM_198270 "CCDS14181|CCDS48087" Q6T4R5 20332100 MGI:2684894 RGD:1561818 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NHS NHS 300457 123783 +HGNC:40403 NHS-AS1 NHS antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.13 Xp22.13 NHS antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873920 ENSG00000230020 OTTHUMG00000021203 uc064yer.1 NR_046632 +HGNC:21021 NHSL1 NHS like 1 protein-coding gene gene with protein product Approved 6q24.1 06q24.1 "bA43P8.1|KIAA1357" C6orf63 chromosome 6 open reading frame 63 2003-05-06 2004-10-07 2015-11-18 2016-10-05 57224 ENSG00000135540 OTTHUMG00000016321 uc011edp.3 AB037778 XM_050421 "CCDS47487|CCDS55063" Q5SYE7 MGI:106390 RGD:1308124 NHSL1 +HGNC:33737 NHSL2 NHS like 2 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 2007-12-06 2015-11-18 2015-11-18 340527 ENSG00000204131 OTTHUMG00000021807 uc284rbn.1 NM_001013627 Q5HYW2 MGI:3645090 RGD:1564117 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NHSL2 NHSL2 +HGNC:18317 NICN1 nicolin 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 MGC12936 2002-03-13 2014-11-19 84276 ENSG00000145029 OTTHUMG00000156848 uc003cwz.2 AJ299740 NM_032316 CCDS2798 Q9BSH3 12392556 MGI:1913507 RGD:1589574 NICN1 611516 +HGNC:40838 NICN1-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:18322 NICN2P nicolin 2, pseudogene pseudogene pseudogene Approved Xp11.3-p11.22 Xp11.3-p11.22 2002-03-13 2010-09-29 171176 NG_005534 +HGNC:7821 NID1 nidogen 1 protein-coding gene gene with protein product Approved 1q42.3 01q42.3 entactin NID nidogen (enactin) 1989-05-25 2005-06-02 2005-06-02 2016-10-05 4811 ENSG00000116962 OTTHUMG00000040071 uc001hxo.4 BC045606 NM_002508 CCDS1608 P14543 "2471408|7557988" MGI:97342 RGD:3178 NID1 131390 +HGNC:13389 NID2 nidogen 2 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 osteonidogen 2001-06-25 2015-11-23 2015-11-23 22795 ENSG00000087303 OTTHUMG00000140298 uc001wzo.4 AB009799 XM_005267405 CCDS9706 Q14112 9733643 MGI:1298229 RGD:1311685 NID2 605399 +HGNC:7822 NIDDM1 non insulin dependent diabetes mellitus 1 phenotype phenotype only Approved 2q 02q type 2 diabetes 1 non-insulin-dependent diabetes mellitus (common, type 2) 1 1996-05-16 2016-06-08 2016-06-08 4812 8640221 +HGNC:7823 NIDDM2 non insulin dependent diabetes mellitus 2 phenotype phenotype only Approved 12q24.2 12q24.2 type 2 diabetes 2 non-insulin-dependent diabetes mellitus (common, type 2) 2 1996-07-11 2016-06-08 2016-06-08 4813 8782826 601407 +HGNC:13390 NIF3L1 NGG1 interacting factor 3 like 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "CALS-7|MDS015" ALS2CR1 "NIF3 (Ngg1 interacting factor 3, S.pombe homolog)-like 1|NIF3 NGG1 interacting factor 3-like 1 (S. pombe)|NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)|NIF3 NGG1 interacting factor 3-like 1" 2001-01-02 2015-11-18 2016-10-05 60491 ENSG00000196290 OTTHUMG00000154588 uc061rgx.1 AB038949 NM_021824 "CCDS42797|CCDS46485|CCDS46486" Q9GZT8 "11124544|11161814|12522100" MGI:1929485 RGD:1310329 NIF3L1 605778 +HGNC:17838 NIFK nucleolar protein interacting with the FHA domain of MKI67 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "Nopp34|hNIFK" nucleolar protein interacting with the FHA domain of pKi-67 MKI67IP MKI67 (FHA domain) interacting nucleolar phosphoprotein RNA binding motif containing 725 2002-05-03 2013-10-10 2013-10-10 2014-11-18 84365 ENSG00000155438 OTTHUMG00000131442 AB044971 NM_032390 CCDS2135 Q9BYG3 "11342549|16244663|14659764" MGI:1915199 RGD:708462 611970 +HGNC:27385 NIFK-AS1 NIFK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q14.3 02q14.3 2013-10-10 2014-11-19 254128 ENSG00000236859 OTTHUMG00000153332 NR_037856 12477932 +HGNC:44949 NIFKP1 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 1 pseudogene pseudogene Approved 10p11.23 10p11.23 MKI67IPP1 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 1 2012-12-19 2013-10-10 2013-10-10 2013-10-10 401825 ENSG00000214434 OTTHUMG00000017891 NG_009461 PGOHUM00000238710 +HGNC:44950 NIFKP2 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 2 pseudogene pseudogene Approved 5q35.2 05q35.2 MKI67IPP2 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 2 2012-12-19 2013-10-10 2013-10-10 2013-10-10 645398 ENSG00000251122 OTTHUMG00000163127 NG_009465 PGOHUM00000235840 +HGNC:44951 NIFKP3 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 3 pseudogene pseudogene Approved 12p13.31 12p13.31 MKI67IPP3 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 3 2012-12-19 2013-10-10 2013-10-10 2013-10-10 100270648 ENSG00000256331 OTTHUMG00000168431 NG_009474 PGOHUM00000239307 +HGNC:44952 NIFKP4 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 4 pseudogene pseudogene Approved 15q24.2 15q24.2 MKI67IPP4 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 4 2012-12-19 2013-10-10 2013-10-10 2013-10-10 100128707 ENSG00000261205 OTTHUMG00000172670 NG_009467 PGOHUM00000246855 +HGNC:44953 NIFKP5 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 5 pseudogene pseudogene Approved 15q26.1 15q26.1 MKI67IPP5 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 5 2012-12-19 2013-10-10 2013-10-10 2013-10-10 100128397 NG_009470 PGOHUM00000246925 +HGNC:44954 NIFKP6 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 6 pseudogene pseudogene Approved 19q13.41 19q13.41 MKI67IPP6 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 6 2012-12-19 2013-10-10 2013-10-10 2013-10-10 100132796 ENSG00000268144 OTTHUMG00000182966 NG_009462 PGOHUM00000264268 +HGNC:44955 NIFKP7 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 7 pseudogene pseudogene Approved 3p22.3 03p22.3 MKI67IPP7 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 7 2012-12-20 2013-10-10 2013-10-10 2013-10-10 106479049 ENSG00000251590 OTTHUMG00000155837 NG_044490 PGOHUM00000237570 +HGNC:44956 NIFKP8 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 8 pseudogene pseudogene Approved 15q25.3 15q25.3 MKI67IPP8 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 8 2012-12-20 2013-10-10 2013-10-10 2013-10-10 642907 ENSG00000259449 OTTHUMG00000172140 NG_009464 PGOHUM00000246911 +HGNC:44957 NIFKP9 nucleolar protein interacting with the FHA domain of MKI67 pseudogene 9 pseudogene pseudogene Approved 2q14.3 02q14.3 MKI67IPP9 MKI67 (FHA domain) interacting nucleolar phosphoprotein pseudogene 9 2012-12-20 2013-10-10 2013-10-10 2013-10-10 106480805 ENSG00000237630 OTTHUMG00000153399 NG_045146 PGOHUM00000240897 +HGNC:28646 NIM1K NIM1 serine/threonine protein kinase protein-coding gene gene with protein product Approved 5p12 05p12 "MGC42105|NIM1" 2014-01-07 2014-11-19 167359 ENSG00000177453 OTTHUMG00000131147 BC036422 NM_153361 CCDS3943 Q8IY84 15733851 MGI:2442399 RGD:1308116 objectId:2291 +HGNC:14906 NIN ninein protein-coding gene gene with protein product Approved 14q22.1 14q22.1 ninein (GSK3B interacting protein) EF-hand domain containing 863 2001-03-15 2015-11-23 2016-10-05 51199 ENSG00000100503 OTTHUMG00000029569 uc001wym.4 AF212162 NM_182946 "CCDS32078|CCDS32079" Q8N4C6 "11004522|11162463" MGI:105108 RGD:1306492 NIN 608684 325022 +HGNC:7824 NINJ1 ninjurin 1 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 NIN1 nerve injury-induced protein-1 1997-07-07 2016-10-05 4814 ENSG00000131669 OTTHUMG00000020242 uc004atg.4 U91512 NM_004148 CCDS6703 Q92982 8780658 MGI:1196617 RGD:3179 NINJ1 602062 +HGNC:7825 NINJ2 ninjurin 2 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 1997-07-07 2016-10-05 4815 ENSG00000171840 OTTHUMG00000090311 uc001qil.4 AF205633 NM_016533 "CCDS8505|CCDS73418|CCDS76499" Q9NZG7 10627596 MGI:1352751 RGD:620552 NINJ2 607297 +HGNC:29163 NINL ninein like protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "KIAA0980|NLP" ninein-like protein EF-hand domain containing 863 2009-05-01 2015-11-23 2016-10-05 22981 ENSG00000101004 OTTHUMG00000032127 uc002wux.3 NM_025176 "CCDS33452|CCDS82605" Q9Y2I6 10231032 MGI:1925427 RGD:1306152 NINL 609580 +HGNC:7826 NIP1L entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-11-03 +HGNC:24328 NIP7 NIP7, nucleolar pre-rRNA processing protein protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "CGI-37|FLJ10296|HSPC031|KD93" nuclear import 7 homolog (S. cerevisiae) 2005-12-01 2013-03-04 2016-07-15 51388 ENSG00000132603 OTTHUMG00000137568 uc002exa.4 AB112439 NM_016101 "CCDS10877|CCDS56003" Q9Y221 "14660641|22195017|20798176" MGI:1913414 RGD:620069 NIP7 +HGNC:45180 NIP7P1 NIP7, nucleolar pre-rRNA processing protein pseudogene 1 pseudogene pseudogene Approved 10q23.33 10q23.33 2013-03-04 2013-03-04 389997 ENSG00000232805 OTTHUMG00000018769 NG_023276 PGOHUM00000238587 +HGNC:45181 NIP7P2 NIP7, nucleolar pre-rRNA processing protein pseudogene 2 pseudogene pseudogene Approved 3q22.1 03q22.1 2013-03-04 2013-03-04 646392 ENSG00000213264 OTTHUMG00000159673 NG_022272 PGOHUM00000238193 +HGNC:45182 NIP7P3 NIP7, nucleolar pre-rRNA processing protein pseudogene 3 pseudogene pseudogene Approved 6q22.1 06q22.1 2013-03-04 2013-03-04 100421245 ENSG00000218428 OTTHUMG00000015425 NG_025858 PGOHUM00000243337 +HGNC:17043 NIPA1 non imprinted in Prader-Willi/Angelman syndrome 1 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 MGC35570 SPG6 spastic paraplegia 6 (autosomal dominant) 2004-01-23 2014-11-19 123606 ENSG00000170113 OTTHUMG00000129099 uc001yvc.4 BK001020 NM_144599 "CCDS73691|CCDS73692" Q7RTP0 14508710 MGI:2442058 RGD:1305401 NIPA1 608145 123785 +HGNC:17044 NIPA2 non imprinted in Prader-Willi/Angelman syndrome 2 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 2004-09-30 2014-11-19 81614 ENSG00000140157 OTTHUMG00000129101 uc001yuy.3 AY732242 NM_030922 "CCDS73693|CCDS73694" Q8N8Q9 14508708 MGI:1913918 RGD:1306051 NIPA2 608146 +HGNC:42041 NIPA2P1 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 1 pseudogene pseudogene Approved 7q21.13 07q21.13 2011-06-01 2014-11-18 100132321 ENSG00000225843 OTTHUMG00000156061 NG_021278 PGOHUM00000232915 +HGNC:42042 NIPA2P2 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 2 pseudogene pseudogene Approved 3p12.3 03p12.3 2011-06-01 2014-11-19 100130204 ENSG00000241022 OTTHUMG00000158821 NG_021276 PGOHUM00000238069 +HGNC:42043 NIPA2P3 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 3 pseudogene pseudogene Approved 21q21.1 21q21.1 2011-06-01 2014-11-18 100128057 NG_021277 PGOHUM00000239151 +HGNC:42044 NIPA2P4 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 4 pseudogene pseudogene Approved 8q21.13 08q21.13 2011-06-01 2014-11-18 100421776 ENSG00000254151 OTTHUMG00000164769 NG_026045 PGOHUM00000249407 +HGNC:42045 NIPA2P5 non imprinted in Prader-Willi/Angelman syndrome 2 pseudogene 5 pseudogene pseudogene Approved 13q31.1 13q31.1 2011-06-01 2014-11-19 100874488 ENSG00000236277 OTTHUMG00000017127 NG_032396 PGOHUM00000248644 +HGNC:27194 NIPAL1 NIPA like domain containing 1 protein-coding gene gene with protein product Approved 4p12 04p12 DKFZp686A06115 NPAL1 2005-07-20 2009-03-24 2016-01-18 2016-01-18 152519 ENSG00000163293 OTTHUMG00000128622 uc003gxw.4 BC067881 NM_207330 CCDS3479 Q6NVV3 MGI:1917951 RGD:1310092 NIPAL1 +HGNC:25854 NIPAL2 NIPA like domain containing 2 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 FLJ13955 NPAL2 2005-07-20 2009-03-24 2016-01-18 2016-01-18 79815 ENSG00000104361 OTTHUMG00000164668 uc003yim.2 AK024017 NM_024759 "CCDS6278|CCDS83310" Q9H841 14702039 MGI:1924488 RGD:1564315 NIPAL2 +HGNC:25233 NIPAL3 NIPA like domain containing 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 DJ462O23.2 NPAL3 2005-07-20 2009-03-24 2016-01-18 2016-10-05 57185 ENSG00000001461 OTTHUMG00000003299 uc001bjh.4 BX640883 NM_020448 "CCDS30631|CCDS81280|CCDS81281|CCDS81282" Q6P499 "8619474|9110174" MGI:1921802 RGD:1563439 NIPAL3 +HGNC:28018 NIPAL4 NIPA like domain containing 4 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 ICHYN ichthyin NIPA-like 4 2009-03-24 2016-01-18 2016-01-18 348938 ENSG00000172548 OTTHUMG00000163497 uc003lwx.5 AK026158 NM_001099287 "CCDS47328|CCDS54944" Q0D2K0 "8619474|9110174|15317751" MGI:2444671 RGD:1309452 NIPAL4 609383 223546 +HGNC:28862 NIPBL NIPBL, cohesin loading factor protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "IDN3|DKFZp434L1319|FLJ11203|FLJ12597|FLJ13354|FLJ13648|Scc2" sister chromatid cohesion 2 homolog (yeast) Nipped-B homolog (Drosophila) 2004-07-21 2016-04-18 2016-04-18 25836 ENSG00000164190 OTTHUMG00000090795 uc003jkl.5 AB019494 NM_015384 "CCDS3920|CCDS47198" Q6KC79 "15146186|15146185" MGI:1913976 RGD:1306393 "LOVD|http://lsdb.hgu.mrc.ac.uk/home.php?select_db=NIPBL|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/CDLS/home.php?select_db=NIPBL" NIPBL 608667 123789 +HGNC:51293 NIPBL-AS1 NIPBL antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 5p13.2 05p13.2 NIPBL-AS 2014-09-19 2014-09-19 646719 NR_046262 24007600 +HGNC:7827 NIPSNAP1 nipsnap homolog 1 (C. elegans) protein-coding gene gene with protein product Approved 22q12.2 22q12.2 4-nitrophenylphosphatase domain and non-neuronal SNAP25-like 1 NIPSNAP, C. elegans, homolog 1 1998-09-30 2001-11-28 2016-10-05 8508 ENSG00000184117 OTTHUMG00000151294 uc003afx.5 AJ001258 NM_003634 CCDS13860 Q9BPW8 9661659 MGI:1278344 RGD:1310419 NIPSNAP1 603249 +HGNC:23619 NIPSNAP3A nipsnap homolog 3A protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "DKFZp564D177|FLJ13953|HSPC299|MGC14553" nipsnap homolog 3A (C. elegans) 2003-11-27 2016-04-19 2016-10-05 25934 ENSG00000136783 OTTHUMG00000020413 uc004bch.1 BC005935 NM_015469 CCDS6760 Q9UFN0 15177564 "MGI:1913786|MGI:1920648" RGD:1359688 NIPSNAP3A 608871 +HGNC:23641 NIPSNAP3B nipsnap homolog 3B protein-coding gene gene with protein product Approved 9q31.1 09q31.1 FLJ11275 nipsnap homolog 3B (C. elegans) 2003-11-27 2016-04-19 2016-10-05 55335 ENSG00000165028 OTTHUMG00000020414 uc004bci.3 BC017914 NM_018376 CCDS6761 Q9BS92 12477932 "MGI:1913786|MGI:1920648" NIPSNAP3B 608872 +HGNC:18006 NISCH nischarin protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "KIAA0975|I-1|IRAS" "imidazoline receptor candidate|I-1 receptor candidate protein|imidazoline receptor antisera selected" 2002-01-16 2014-11-19 11188 ENSG00000010322 OTTHUMG00000158571 uc032rnx.2 AF082516 NM_007184 "CCDS33767|CCDS63651|CCDS63652" Q9Y2I1 "11912194|10882231" MGI:1928323 RGD:1306950 NISCH 615507 +HGNC:7828 NIT1 nitrilase 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 1998-04-27 2016-10-05 4817 ENSG00000158793 OTTHUMG00000031473 uc001fxv.3 AF069984 XM_005245215 "CCDS1218|CCDS53401|CCDS53402|CCDS53403" Q86X76 9671749 MGI:1350916 RGD:727821 NIT1 604618 +HGNC:29878 NIT2 nitrilase family member 2 protein-coding gene gene with protein product Approved 3q12.2 03q12.2 omega-amidase NIT2 nitrilase family, member 2 2004-07-12 2015-11-18 2016-10-05 56954 ENSG00000114021 OTTHUMG00000159066 uc003dtv.4 AF284574 NM_020202 CCDS33806 Q9NQR4 10959838 MGI:1261838 RGD:1310494 NIT2 616769 +HGNC:25743 NKAIN1 Na+/K+ transporting ATPase interacting 1 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 FLJ12650 sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1 FAM77C family with sequence similarity 77, member C Na+/K+ transporting ATPase interacting 659 2005-09-02 2007-10-04 2007-10-04 2016-04-25 79570 ENSG00000084628 OTTHUMG00000003788 uc010ogd.3 AK022712 NM_024522 CCDS339 Q4KMZ8 17606467 MGI:1914399 RGD:1561205 NKAIN1 612871 +HGNC:38593 NKAIN1P1 Na+/K+ transporting ATPase interacting 1 pseudogene 1 pseudogene pseudogene Approved 1q21.1 01q21.1 2010-10-25 2016-10-05 100462647 ENSG00000242943 OTTHUMG00000040703 NG_021262 PGOHUM00000244253 +HGNC:16443 NKAIN2 Na+/K+ transporting ATPase interacting 2 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 FAM77B TCBA1 T-cell lymphoma breakpoint associated target 1 Na+/K+ transporting ATPase interacting 659 2001-08-31 2007-10-04 2007-10-04 2016-10-05 154215 ENSG00000188580 OTTHUMG00000015500 uc003pzo.4 AB070452 NM_001040214 CCDS34526 Q5VXU1 17606467 MGI:1923447 RGD:2323702 NKAIN2 609758 +HGNC:26829 NKAIN3 Na+/K+ transporting ATPase interacting 3 protein-coding gene gene with protein product Approved 8q12.3 08q12.3 FLJ39630 FAM77D family with sequence similarity 77, member D Na+/K+ transporting ATPase interacting 659 2005-09-02 2007-10-04 2007-10-04 2014-11-18 286183 ENSG00000185942 OTTHUMG00000164361 uc010lyq.2 AK096949 NM_173688 Q8N8D7 17606467 MGI:2444830 RGD:1591051 NKAIN3 612872 +HGNC:16191 NKAIN4 Na+/K+ transporting ATPase interacting 4 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "bA261N11.2|FAM77A" C20orf58 chromosome 20 open reading frame 58 Na+/K+ transporting ATPase interacting 659 2001-07-17 2007-10-04 2007-10-04 2014-11-19 128414 ENSG00000101198 OTTHUMG00000032959 uc002yek.3 BC041812 NM_152864 CCDS13514 Q8IVV8 17606467 MGI:1915372 RGD:1305809 NKAIN4 612873 +HGNC:29873 NKAP NFKB activating protein protein-coding gene gene with protein product Approved Xq24 Xq24 FLJ22626 NF kappaB activating protein 2007-08-16 2014-11-19 79576 ENSG00000101882 OTTHUMG00000022284 uc004esh.4 BC012770 NM_024528 CCDS14592 Q8N5F7 14550261 MGI:1914300 RGD:1565955 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NKAP NKAP 300766 +HGNC:21584 NKAPL NFKB activating protein like protein-coding gene gene with protein product Approved 6p22.1 06p22.1 bA424I5.1 C6orf194 "chromosome 6 open reading frame 194|NFKB activating protein-like" 2003-06-25 2007-08-16 2015-11-23 2016-10-05 222698 ENSG00000189134 OTTHUMG00000014517 uc003nkt.5 BC038240 NM_001007531 CCDS34353 Q5M9Q1 MGI:1913957 RGD:1311667 NKAPL +HGNC:26706 NKAPP1 NFKB activating protein pseudogene 1 pseudogene pseudogene Approved Xq24 Xq24 FLJ36576 CXorf42 chromosome X open reading frame 42 2004-09-09 2010-07-20 2010-07-20 2015-03-11 158801 ENSG00000233382 OTTHUMG00000022295 AK093895 NR_027131 Q8N9T2 NKAPP1 +HGNC:17045 NKD1 naked cuticle homolog 1 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 naked cuticle homolog 1 (Drosophila) EF-hand domain containing 863 2001-10-19 2016-03-31 2016-03-31 85407 ENSG00000140807 OTTHUMG00000133169 uc002egg.3 AF358135 XM_017023804 CCDS10743 Q969G9 11356022 MGI:2135954 RGD:1308491 NKD1 607851 +HGNC:17046 NKD2 naked cuticle homolog 2 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 Naked2 "naked cuticle-2|Dvl-binding protein NKD2" naked cuticle homolog 2 (Drosophila) EF-hand domain containing 863 2001-10-19 2016-03-31 2016-10-05 85409 ENSG00000145506 OTTHUMG00000090348 uc003jbt.3 AF358137 NM_033120 "CCDS3859|CCDS59486" Q969F2 "11356022|11604995" MGI:1919543 RGD:1311459 NKD2 607852 +HGNC:7830 NKG7 natural killer cell granule protein 7 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "GIG1|GMP-17" granule membrane protein 17 natural killer cell group 7 sequence 1993-12-15 2014-03-07 2014-11-19 4818 ENSG00000105374 OTTHUMG00000182898 uc002pwj.4 NM_005601 CCDS12830 Q16617 8458737 MGI:1931250 RGD:621523 NKG7 606008 +HGNC:51599 NKILA NF-kappaB interacting long non-coding RNA non-coding RNA RNA, long non-coding Approved 20q13.31 20q13.31 NF-kappaB interacting lncRNA Long non-coding RNAs 788 2015-03-13 2015-07-31 105416157 ENSG00000278709 OTTHUMG00000186958 AK056098 NR_131157 "25759022|26069731" +HGNC:17899 NKIRAS1 NFKB inhibitor interacting Ras like 1 protein-coding gene gene with protein product Approved 3p24.2 03p24.2 "KBRAS1|kappaB-Ras1" NFKB inhibitor interacting Ras-like protein 1 RAS type GTPase family 389 2004-03-31 2016-05-04 2016-10-05 28512 ENSG00000197885 OTTHUMG00000155605 uc003cck.4 AF229839 NM_020345 CCDS33717 Q9NYS0 10657303 MGI:1916971 RGD:1308560 NKIRAS1 604496 +HGNC:17898 NKIRAS2 NFKB inhibitor interacting Ras like 2 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "KBRAS2|DKFZP434N1526|kappaB-Ras2" "NFKB inhibitor interacting Ras-like protein 2|NFKB inhibitor interacting Ras-like 2" RAS type GTPase family 389 2004-03-31 2016-04-01 2016-10-05 28511 ENSG00000168256 OTTHUMG00000133503 uc002hyq.4 AF229840 NM_017595 "CCDS11415|CCDS45679|CCDS45680" Q9NYR9 10657303 MGI:1919216 RGD:1307363 NKIRAS2 604497 +HGNC:24739 NKPD1 NTPase, KAP family P-loop domain containing 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 FLJ33600 2004-06-04 2012-07-02 2015-08-25 284353 ENSG00000179846 OTTHUMG00000160521 uc010xxi.2 AK090919 NM_198478 Q17RQ9 14702039 MGI:1916797 RGD:1591760 NKPD1 +HGNC:19374 NKRF NFKB repressing factor protein-coding gene gene with protein product Approved Xq24 Xq24 "ITBA4|NRF" NF-kappaB repressing factor G-patch domain containing 579 2004-11-01 2008-03-26 2014-11-19 55922 ENSG00000186416 OTTHUMG00000022277 uc004err.4 AJ011812 NM_017544 "CCDS35375|CCDS55486" O15226 10562553 MGI:1924536 RGD:6500424 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NKRF NKRF 300440 +HGNC:7832 NKS1 natural killer cell susceptibility 1 phenotype phenotype only Approved 6p21.3 06p21.3 EC-1 1991-08-30 1998-08-21 4819 1979875 272370 +HGNC:7833 NKTR natural killer cell triggering receptor protein-coding gene gene with protein product Approved 3p22.1 03p22.1 p104 "NK-tumor recognition protein|natural-killer cells cyclophilin-related protein|NK-TR protein" natural killer-tumor recognition sequence Cyclophilin peptidylprolyl isomerases 909 1993-03-17 2014-01-20 2014-11-19 4820 ENSG00000114857 OTTHUMG00000133037 uc003clo.4 NM_005385 CCDS2702 P30414 "8314596|8144875" MGI:97346 RGD:2321593 NKTR 161565 +HGNC:24975 NKX1-1 NK1 homeobox 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "HSPX153|SAX2" NK1 transcription factor related, locus 1 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 2006-06-29 2007-07-09 2012-03-09 54729 ENSG00000235608 OTTHUMG00000160165 uc062ulo.1 X76978 XM_926341 Q15270 7518789 MGI:109346 RGD:1564874 NKX1-1 8394 +HGNC:31652 NKX1-2 NK1 homeobox 2 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 bB238F13.2 C10orf121 "chromosome 10 open reading frame 121|NK1 transcription factor related, locus 2 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 2004-05-27 2006-06-29 2007-07-09 2016-01-15 390010 ENSG00000229544 OTTHUMG00000185174 uc010quf.3 CN285329 XM_372331 CCDS59221 Q9UD57 10681422 MGI:104806 RGD:1306744 NKX1-2 8395 +HGNC:11825 NKX2-1 NK2 homeobox 1 protein-coding gene gene with protein product Approved 14q13.3 14q13.3 "TTF-1|TTF1" "NKX2A|BCH|TITF1" "benign chorea|thyroid transcription factor 1" NKL subclass homeoboxes and pseudogenes 519 1992-06-12 2007-07-26 2007-07-26 2014-11-18 7080 ENSG00000136352 OTTHUMG00000140225 uc059axg.1 NM_003317 "CCDS9659|CCDS41945" P43699 1976511 MGI:108067 RGD:3866 NKX2-1 600635 8469 156077 +HGNC:40585 NKX2-1-AS1 NKX2-1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q13.3 14q13.3 NKX2-1 antisense RNA 1 (non-protein coding) 2011-07-08 2012-08-15 2014-11-19 100506237 ENSG00000253563 OTTHUMG00000163889 uc001wtw.2 NR_103710 +HGNC:7835 NKX2-2 NK2 homeobox 2 protein-coding gene gene with protein product Approved 20p11.22 20p11.22 NKX2.2 NKX2B "NK-2 (Drosophila) homolog B|NK2 transcription factor related, locus 2 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 1992-06-12 2002-10-04 2007-07-09 2015-08-25 4821 ENSG00000125820 OTTHUMG00000170524 uc002wsi.4 AF019415 XM_006723566 CCDS13145 O95096 "9703340|1346742" MGI:97347 RGD:1308443 NKX2-2 604612 8470 +HGNC:37154 NKX2-2-AS1 NKX2-2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p11.22 20p11.22 NKX2-2AS NKX2-2 antisense RNA NKX2-2 antisense RNA 1 (non-protein coding) 2011-07-08 2012-08-15 2015-07-30 100874189 ENSG00000258197 OTTHUMG00000187950 uc061vug.1 18538132 +HGNC:7836 NKX2-3 NK2 homeobox 3 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "NKX2.3|CSX3|NKX4-3" NKX2C "NK-2 (Drosophila) homolog C|NK2 transcription factor related, locus 3 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 1992-06-12 2002-10-04 2011-06-01 2015-08-25 159296 ENSG00000119919 OTTHUMG00000018887 uc009xwj.4 NM_145285 CCDS41558 Q8TAU0 "1346742|9142493" MGI:97348 RGD:1308521 NKX2-3 606727 8537 +HGNC:7837 NKX2-4 NK2 homeobox 4 protein-coding gene gene with protein product Approved 20p11.22 20p11.22 NKX2.4 NKX2D "NK-2 (Drosophila) homolog D|NK2 transcription factor related, locus 4 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 1992-06-12 2002-10-04 2007-07-09 2015-08-25 644524 ENSG00000125816 OTTHUMG00000032022 uc010gcz.4 NM_033176 CCDS42855 Q9H2Z4 "1346742|10818213" MGI:97349 RGD:1304985 NKX2-4 607808 8471 +HGNC:2488 NKX2-5 NK2 homeobox 5 protein-coding gene gene with protein product Approved 5q34 05q34 "CSX1|NKX2.5|NKX4-1" tinman paralog (Drosophila) "CSX|NKX2E" "cardiac-specific homeo box|NK2 transcription factor related, locus 5 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 1995-02-07 2002-10-04 2011-06-01 2016-10-12 1482 ENSG00000183072 OTTHUMG00000130522 uc003mcm.3 AB021133 XM_017009071 "CCDS4387|CCDS54949|CCDS54950" P52952 "7665173|8900537" MGI:97350 RGD:620520 LRG_671|http://www.lrg-sequence.org/LRG/LRG_671 NKX2-5 600584 8538 123797 +HGNC:32940 NKX2-6 NK2 homeobox 6 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "CSX2|NKX4-2" tinman paralog (Drosophila) NK2 transcription factor related, locus 6 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 2006-06-29 2011-06-01 2014-11-19 137814 ENSG00000180053 OTTHUMG00000163867 uc011kzy.3 CN272646 NM_001136271 A6NCS4 15649947 MGI:97351 RGD:1306149 NKX2-6 611770 8472 159562 +HGNC:16364 NKX2-8 NK2 homeobox 8 protein-coding gene gene with protein product Approved 14q13.3 14q13.3 "NKX2.8|Nkx2-9" NKX2H "NK-2 homolog H (Drosophila)|NK2 transcription factor related, locus 8 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 2002-07-08 2002-10-04 2007-07-09 2015-09-01 26257 ENSG00000136327 OTTHUMG00000028772 uc001wtx.4 NM_014360 CCDS9660 O15522 9446603 MGI:1270158 RGD:1310629 NKX2-8 603245 8473 +HGNC:7838 NKX3-1 NK3 homeobox 1 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "NKX3.1|BAPX2" NKX3A "NK homeobox (Drosophila), family 3, A|NK3 transcription factor related, locus 1 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 1997-05-09 2002-10-04 2007-07-09 2015-08-25 4824 ENSG00000167034 OTTHUMG00000097851 uc011kzx.3 NM_006167 "CCDS6042|CCDS59095" Q99801 9226374 MGI:97352 RGD:1305369 NKX3-1 602041 8539 +HGNC:951 NKX3-2 NK3 homeobox 2 protein-coding gene gene with protein product Approved 4p15.33 04p15.33 "NKX3B|NKX3.2" BAPX1 bagpipe homeobox homolog 1 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 1997-12-23 2007-07-26 2007-07-26 2016-10-05 579 ENSG00000109705 OTTHUMG00000090657 uc003gmx.3 AF009801 NM_001189 CCDS3410 P78367 9344671 MGI:108015 RGD:1584617 NKX3-2 602183 8556 232223 +HGNC:7839 NKX6-1 NK6 homeobox 1 protein-coding gene gene with protein product Approved 4q21.23 04q21.23 Nkx6.1 NKX6A "NK homeobox (Drosophila), family 6, A|NK6 transcription factor related, locus 1 (Drosophila)" NKL subclass homeoboxes and pseudogenes 519 1996-10-26 2002-10-04 2007-07-09 2016-10-05 4825 ENSG00000163623 OTTHUMG00000130426 uc003hpa.2 AH007313 NM_006168 CCDS3607 P78426 9119408 MGI:1206039 RGD:69318 NKX6-1 602563 8540 +HGNC:19321 NKX6-2 NK6 homeobox 2 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "NKX6B|GTX|NKX6.1" NK6 transcription factor related, locus 2 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 2002-10-03 2007-07-09 2014-11-18 84504 ENSG00000148826 OTTHUMG00000019294 uc001llr.3 AF184215 XM_017016789 CCDS7670 Q9C056 11210186 MGI:1352738 RGD:1307280 NKX6-2 605955 8541 +HGNC:26328 NKX6-3 NK6 homeobox 3 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 FLJ25169 NK6 transcription factor related, locus 3 (Drosophila) NKL subclass homeoboxes and pseudogenes 519 2006-06-29 2007-07-09 2014-11-19 157848 ENSG00000165066 OTTHUMG00000164083 uc064mig.1 AK057898 NM_152568 CCDS6118 A6NJ46 16326147 MGI:1921811 RGD:1597780 NKX6-3 610772 8474 +HGNC:19889 NLE1 notchless homolog 1 protein-coding gene gene with protein product Approved 17q12 17q12 FLJ10458 Notchless gene homolog, (Drosophila) notchless homolog 1 (Drosophila) WD repeat domain containing 362 2005-05-24 2005-08-09 2016-05-04 2016-05-04 54475 ENSG00000073536 OTTHUMG00000132928 uc002hiy.3 NM_018096 "CCDS11291|CCDS45647" Q9NVX2 MGI:2429770 RGD:1308301 NLE1 +HGNC:14291 NLGN1 neuroligin 1 protein-coding gene gene with protein product Approved 3q26.31 03q26.31 KIAA1070 2001-01-02 2016-10-05 22871 ENSG00000169760 OTTHUMG00000157005 uc003fio.3 AB028993 NM_014932 CCDS3222 Q8N2Q7 "10767552|10819331" MGI:2179435 RGD:621117 NLGN1 600568 S09.994 +HGNC:40676 NLGN1-AS1 NLGN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q26.31 03q26.31 NLGN1 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874010 ENSG00000228213 OTTHUMG00000157016 uc062qau.1 NR_046664 +HGNC:14290 NLGN2 neuroligin 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 KIAA1366 2001-01-02 2016-10-05 57555 ENSG00000169992 OTTHUMG00000108138 uc060apb.1 AB037787 NM_020795 CCDS11103 Q8NFZ4 "10767552|10819331" MGI:2681835 RGD:621118 NLGN2 606479 S09.995 +HGNC:14289 NLGN3 neuroligin 3 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "HNL3|KIAA1480|ASPGX1|AUTSX1" 2001-01-02 2014-11-19 54413 ENSG00000196338 OTTHUMG00000021790 uc004dzd.3 AB040913 NM_018977 "CCDS14407|CCDS55441|CCDS55442" Q9NZ94 "10767552|10819331" MGI:2444609 RGD:621119 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NLGN3 NLGN3 300336 123803 S09.987 +HGNC:14287 NLGN4X neuroligin 4, X-linked protein-coding gene gene with protein product Approved Xp22.32-p22.31 Xp22.32-p22.31 "KIAA1260|NLGN|HLNX" NLGN4 neuroligin 4 2001-01-02 2004-05-26 2004-05-21 2016-10-11 57502 ENSG00000146938 OTTHUMG00000021093 uc004crr.5 AB033086 NM_020742 CCDS14126 Q8N0W4 10574462 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NLGN4X NLGN4X 300427 123807 S09.988 +HGNC:15529 NLGN4Y neuroligin 4, Y-linked protein-coding gene gene with protein product Approved Yq11.221 Yq11.221 KIAA0951 neuroligin 4, Y linked 2002-05-22 2004-05-21 2015-09-01 22829 ENSG00000165246 OTTHUMG00000036618 uc004ftg.3 NM_014893 "CCDS14788|CCDS55553|CCDS56619" Q8NFZ3 10231032 NLGN4Y 400028 S09.989 +HGNC:38793 NLGN4Y-AS1 NLGN4Y antisense RNA 1 non-coding RNA RNA, long non-coding Approved Yq11.221 Yq11.221 "NLGN4YAS|NLGN4Y-AS" "NLGN4Y antisense RNA (non-protein coding)|NLGN4Y antisense RNA 1 (non-protein coding)" 2010-08-04 2010-11-25 2012-08-15 2013-09-20 100874056 ENSG00000228787 OTTHUMG00000058879 uc031tkz.1 NR_046504 +HGNC:29858 NLK nemo like kinase protein-coding gene gene with protein product Approved 17q11.2 17q11.2 nemo-like kinase 2004-02-19 2016-04-01 2016-04-01 51701 ENSG00000087095 OTTHUMG00000132451 uc010crj.4 AF197898 NM_016231 CCDS11224 Q9UBE8 "9448268|10863097" MGI:1201387 RGD:1561602 NLK 609476 objectId:2125 +HGNC:16058 NLN neurolysin protein-coding gene gene with protein product Approved 5q12.3 05q12.3 KIAA1226 neurotensin endopeptidase AGTBP "angiotensin binding protein|neurolysin (metallopeptidase M3 family)" 2001-07-26 2016-01-27 2016-01-27 57486 ENSG00000123213 OTTHUMG00000097803 uc003juf.3 AJ300837 XM_005248559 CCDS3989 Q9BYT8 10574462 MGI:1923055 RGD:621518 NLN 611530 M03.002 3.4.24.16 +HGNC:29889 NLRC3 NLR family CARD domain containing 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "CLR16.2|FLJ00348|NOD3" "nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 3|NOD-like receptor C3" NLR family 666 2006-12-08 2016-06-01 2016-07-15 197358 ENSG00000167984 OTTHUMG00000177561 uc032dpc.2 BK001112 NM_178844 CCDS73817 Q7RTR2 "15705585|12766759|25277106" MGI:2444070 RGD:1304902 NLRC3 615648 objectId:1764 +HGNC:16412 NLRC4 NLR family CARD domain containing 4 protein-coding gene gene with protein product Approved 2p22.3 02p22.3 "CLAN1|ipaf|CLANA|CLANB|CLANC|CLAND|CLR2.1|CLAN" "nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 4|NOD-like receptor C4" CARD12 caspase recruitment domain family, member 12 "NLR family|Caspase recruitment domain containing" "666|959" 2002-09-19 2006-12-08 2016-06-01 2016-06-01 58484 ENSG00000091106 OTTHUMG00000152107 uc061hxs.1 AF376061 NM_021209 "CCDS33174|CCDS77400" Q9NPP4 11374873 MGI:3036243 RGD:1309831 NLRC4 606831 444736 objectId:1782 +HGNC:29933 NLRC5 NLR family CARD domain containing 5 protein-coding gene gene with protein product Approved 16q13 16q13 "NOD27|CLR16.1|FLJ21709" "nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 5|NOD-like receptor C5" NLR family 666 2006-12-08 2016-06-01 2016-07-15 84166 ENSG00000140853 OTTHUMG00000133470 uc021tit.2 AF389420 NM_032206 "CCDS10773|CCDS81985" Q86WI3 "12615073|24815518|23175229" MGI:3612191 RGD:1309166 NLRC5 613537 objectId:1765 +HGNC:14374 NLRP1 NLR family pyrin domain containing 1 protein-coding gene gene with protein product Approved 17p13 17p13 "KIAA0926|DKFZp586O1822|CARD7|NAC|CLR17.1|DEFCAP|VAMAS1" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 1 "NALP1|SLEV1" "NACHT, leucine rich repeat and PYD (pyrin domain) containing 1|systemic lupus erythematosus, vitiligo-related 1" "NLR family|Caspase recruitment domain containing|Pyrin domain containing" "666|959|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 22861 ENSG00000091592 OTTHUMG00000132419 uc060acy.1 AB023143 NM_033004 "CCDS32537|CCDS42244|CCDS42245|CCDS42246|CCDS58508" Q9C000 "8781126|12563287|17377159" MGI:2684861 RGD:1310963 NLRP1 606636 139184 S79.A05 objectId:1768 +HGNC:22948 NLRP2 NLR family pyrin domain containing 2 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "FLJ20510|PYPAF2|NBS1|PAN1|CLR19.9" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 2 NALP2 NACHT, leucine rich repeat and PYD containing 2 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 55655 ENSG00000022556 OTTHUMG00000167763 uc021vbq.2 AK000517 NM_017852 "CCDS12913|CCDS54318|CCDS54319" Q9NX02 "12563287|11270363" MGI:3041206 RGD:1589140 NLRP2 609364 objectId:1769 +HGNC:29887 NLRP2B NLR family pyrin domain containing 2B protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "NOD24|NALP2P|CLRX.1|POP4" NLRP2P NLR family, pyrin domain containing 2 pseudogene "NLR family|Pyrin domain containing" "666|994" 2006-12-08 2016-06-01 2016-06-01 2016-10-05 286430 ENSG00000215174 OTTHUMG00000021686 uc284rbm.1 BK001116 NG_002752 CCDS83476 P0DMW2 "12766759|24871464" PGOHUM00000304657 +HGNC:16400 NLRP3 NLR family pyrin domain containing 3 protein-coding gene gene with protein product Approved 1q44 01q44 "AGTAVPRL|AII|AVP|FCAS|FCU|NALP3|PYPAF1|MWS|CLR1.1" "Cryopyrin|nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 3" "C1orf7|CIAS1" cold autoinflammatory syndrome 1 "NLR family|Pyrin domain containing" "666|994" 2001-08-28 2006-12-08 2016-06-01 2016-10-12 114548 ENSG00000162711 OTTHUMG00000040647 uc001icr.4 AF054176 NM_004895 "CCDS1632|CCDS1633|CCDS44346|CCDS44347" Q96P20 10741953 MGI:2653833 RGD:1308314 "INFEVERS: The repertory of Familial Mediterranean Fever (FMF) and Hereditary Inflammatory Disorders Mutations|http://fmf.igh.cnrs.fr/infevers/|LRG_197|http://www.lrg-sequence.org/LRG/LRG_197" NLRP3 606416 123821 objectId:1770 +HGNC:29886 NLRP3P1 NLR family pyrin domain containing 3 pseudogene 1 pseudogene pseudogene Approved Xq22.3 Xq22.3 NOD13 NLRP3P NLR family, pyrin domain containing 3 pseudogene "NLR family|Pyrin domain containing" "666|994" 2006-12-08 2016-02-29 2016-06-01 2016-06-01 347402 ENSG00000277883 OTTHUMG00000188083 BK001115 NG_002753 12766759 PGOHUM00000305245 +HGNC:22943 NLRP4 NLR family pyrin domain containing 4 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "PYPAF4|FLJ32126|PAN2|RNH2|CLR19.5|CT58" "nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 4|cancer/testis antigen 58" NALP4 NACHT, leucine rich repeat and PYD containing 4 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 147945 ENSG00000160505 OTTHUMG00000181734 uc002qmd.5 AF479747 NM_134444 CCDS12936 Q96MN2 "12563287|12019269" "MGI:1890518|MGI:3056600" RGD:1563529 NLRP4 609645 objectId:1771 +HGNC:21269 NLRP5 NLR family pyrin domain containing 5 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "PYPAF8|MATER|PAN11|CLR19.8" "nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 5|maternal antigen that embryos require" NALP5 NACHT, leucine rich repeat and PYD containing 5 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 126206 ENSG00000171487 OTTHUMG00000149887 uc002qmj.4 AY154460 NM_153447 CCDS12938 P59047 "12563287|11925379" MGI:1345193 RGD:1307446 NLRP5 609658 objectId:1772 +HGNC:22944 NLRP6 NLR family pyrin domain containing 6 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "PYPAF5|PAN3|CLR11.4" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 6 NALP6 NACHT, leucine rich repeat and PYD containing 6 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-10-05 171389 ENSG00000174885 OTTHUMG00000119070 uc010qvs.4 AF479748 NM_138329 "CCDS7693|CCDS60680" P59044 "12563287|12019269" MGI:2141990 RGD:9392678 NLRP6 609650 objectId:1773 +HGNC:22947 NLRP7 NLR family pyrin domain containing 7 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "PYPAF3|NOD12|PAN7|CLR19.4" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 7 NALP7 NACHT, leucine rich repeat and PYD containing 7 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 199713 ENSG00000167634 OTTHUMG00000180428 uc061ctx.1 AF464765 NM_139176 "CCDS12912|CCDS33109|CCDS46183" Q8WX94 "12563287|12019269" INFEVERS: The repertory of RMHs sequence variants|http://fmf.igh.cnrs.fr/infevers/ NLRP7 609661 123834 objectId:1774 +HGNC:22940 NLRP8 NLR family pyrin domain containing 8 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "NOD16|PAN4|CLR19.2" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 8 NALP8 NACHT, leucine rich repeat and PYD containing 8 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 126205 ENSG00000179709 OTTHUMG00000181754 uc002qmh.3 AY154463 NM_176811 "CCDS12937|CCDS82402" Q86W28 12563287 NLRP8 609659 objectId:1775 +HGNC:22941 NLRP9 NLR family pyrin domain containing 9 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "NOD6|PAN12|CLR19.1" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 9 NALP9 NACHT, leucine rich repeat and PYD containing 9 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 338321 ENSG00000185792 OTTHUMG00000180920 uc002qly.3 AY154464 NM_176820 CCDS12934 Q7RTR0 12563287 MGI:2675377 RGD:1308981 NLRP9 609663 objectId:1776 +HGNC:29888 NLRP9P1 NLR family pyrin domain containing 9 pseudogene 1 pseudogene pseudogene Approved 12q24.33 12q24.33 NOD25 NLRP9P NLR family, pyrin domain containing 9 pseudogene "NLR family|Pyrin domain containing" "666|994" 2006-12-08 2016-02-29 2016-06-01 2016-06-01 347933 ENSG00000256581 OTTHUMG00000168439 BK001117 NG_002754 12766759 PGOHUM00000291835 +HGNC:21464 NLRP10 NLR family pyrin domain containing 10 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "NOD8|PAN5|Pynod|CLR11.1" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 10 NALP10 NACHT, leucine rich repeat and PYD containing 10 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 338322 ENSG00000182261 OTTHUMG00000165673 uc001mfv.2 AY154465 NM_176821 CCDS7784 Q86W26 12563287 MGI:2444084 RGD:1307387 NLRP10 609662 objectId:1777 +HGNC:22945 NLRP11 NLR family pyrin domain containing 11 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "PYPAF6|NOD17|PAN10|CLR19.6" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 11 NALP11 NACHT, leucine rich repeat and PYD containing 11 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 204801 ENSG00000179873 OTTHUMG00000180921 uc061dcz.1 AY095145 NM_145007 "CCDS12935|CCDS74458" P59045 "12563287|12019269" NLRP11 609664 objectId:1778 +HGNC:22938 NLRP12 NLR family pyrin domain containing 12 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "RNO2|PYPAF7|Monarch1|PAN6|CLR19.3" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 12 NALP12 NACHT, leucine rich repeat and PYD containing 12 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-10-12 91662 ENSG00000142405 OTTHUMG00000060776 uc002qch.6 AY095146 NM_144687 "CCDS12864|CCDS62784|CCDS62785" P59046 "12563287|12019269" MGI:2676630 RGD:1309415 LRG_181|http://www.lrg-sequence.org/LRG/LRG_181 NLRP12 609648 138361 objectId:1779 +HGNC:22937 NLRP13 NLR family pyrin domain containing 13 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "NOD14|PAN13|CLR19.7" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 13 NALP13 NACHT, leucine rich repeat and PYD containing 13 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 126204 ENSG00000173572 OTTHUMG00000167839 uc010ygg.3 AY154468 NM_176810 "CCDS33119|CCDS82401" Q86W25 12563287 NLRP13 609660 objectId:1780 +HGNC:22939 NLRP14 NLR family pyrin domain containing 14 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "NOD5|GC-LRR|Nalp-iota|PAN8|CLR11.2" nucleotide-binding oligomerization domain, leucine rich repeat and pyrin domain containing 14 NALP14 NACHT, leucine rich repeat and PYD containing 14 "NLR family|Pyrin domain containing" "666|994" 2003-10-28 2006-12-08 2016-06-01 2016-06-01 338323 ENSG00000158077 OTTHUMG00000165508 uc001mfb.2 BK001107 NM_176822 CCDS7776 Q86W24 12563287 MGI:1924108 RGD:1598218 NLRP14 609665 objectId:1781 +HGNC:29890 NLRX1 NLR family member X1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "NOD9|CLR11.3" "nucleotide-binding oligomerization domain, leucine rich repeat containing X1|NOD-like receptor X1|NLR family, X1" NLR family 666 2006-12-08 2014-11-19 79671 ENSG00000160703 OTTHUMG00000154476 uc031yhm.2 AB094095 NM_170722 CCDS8416 Q86UT6 12766759 MGI:2429611 RGD:1311293 NLRX1 611947 objectId:1766 +HGNC:7841 NM neutrophil migration phenotype phenotype only Approved 7q22-qter 07q22-qter 2001-06-22 2012-10-02 4827 162820 +HGNC:7842 NMB neuromedin B protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "MGC2277|MGC3936|MGC17211" 1989-05-11 2016-10-05 4828 ENSG00000197696 OTTHUMG00000148666 uc002bkz.4 NM_021077 "CCDS10332|CCDS42076" P08949 2458345 MGI:1915289 RGD:1562710 NMB 162340 +HGNC:7843 NMBR neuromedin B receptor protein-coding gene gene with protein product Approved 6q24.1 06q24.1 "BB1|BB1R" bombesin receptor 1 Bombesin receptors 222 1991-08-30 2016-06-07 4829 ENSG00000135577 OTTHUMG00000015704 uc003qiu.3 NM_002511 CCDS5196 P28336 MGI:1100525 RGD:3181 NMBR 162341 objectId:38 +HGNC:24250 NMD3 NMD3 ribosome export adaptor protein-coding gene gene with protein product Approved 3q26.1 03q26.1 CGI-07 NMD3 homolog (S. cerevisiae) 2005-01-26 2013-08-06 2014-11-18 51068 ENSG00000169251 OTTHUMG00000159063 uc062ppw.1 BC013317 NM_015938 "CCDS3194|CCDS82870" Q96D46 "10810093|23782956|12773398" MGI:2140103 RGD:1308468 NMD3 611021 +HGNC:22672 NMD3P1 NMD3 ribosome export adaptor pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 NMD3P "nonsense-mediated mRNA 3 homolog (S. cerevisiae) pseudogene|nonsense-mediated mRNA 3 homolog (S. cerevisiae) pseudogene 1|NMD3 homolog (S. cerevisiae) pseudogene 1" 2005-01-26 2010-02-26 2013-08-06 2014-11-18 441238 ENSG00000226342 OTTHUMG00000156544 NG_016698 +HGNC:37820 NMD3P2 NMD3 ribosome export adaptor pseudogene 2 pseudogene pseudogene Approved 7p11.2 07p11.2 "nonsense-mediated mRNA 3 homolog (S. cerevisiae) pseudogene 2|NMD3 homolog (S. cerevisiae) pseudogene 2" 2010-02-26 2013-08-06 2014-11-18 100286929 ENSG00000231504 OTTHUMG00000156288 NG_022534 PGOHUM00000232726 +HGNC:7849 NME1 NME/NM23 nucleoside diphosphate kinase 1 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "NM23|NM23-H1|NDPKA" non-metastatic cells 1, protein (NM23A) expressed in NME/NM23 family 961 1991-07-26 2012-05-18 2016-07-15 4830 ENSG00000239672 OTTHUMG00000137474 uc002iti.3 "AL360191|X17620" NM_000269 "CCDS11578|CCDS11579" P15531 "8270257|19852809" MGI:97355 RGD:70497 NME1 156490 2.7.4.6 +HGNC:33531 NME1-NME2 NME1-NME2 readthrough other readthrough Approved 17q21.33 17q21.33 "NM23-LV|NMELV" 2007-07-31 2015-08-17 654364 ENSG00000011052 OTTHUMG00000137475 uc002itj.4 DQ109675 NM_001018136 CCDS32682 16442775 MGI:3648428 NME1-NME2 +HGNC:39904 NME1P1 NME/NM23 nucleoside diphosphate kinase 1 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 non-metastatic cells 1, protein (NM23A) expressed in, pseudogene 1 2011-05-18 2012-05-18 2012-05-18 100874501 ENSG00000237175 OTTHUMG00000016549 NG_032368 PGOHUM00000248324 +HGNC:7850 NME2 NME/NM23 nucleoside diphosphate kinase 2 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "NM23-H2|NDPKB" non-metastatic cells 2, protein (NM23B) expressed in NME/NM23 family 961 1991-07-26 2012-05-18 2016-07-15 4831 ENSG00000243678 OTTHUMG00000154062 uc002itl.3 X58965 NM_002512 "CCDS11580|CCDS74107" P22392 "1988104|19852809" MGI:97356 RGD:619877 NME2 156491 2.7.4.6 +HGNC:31358 NME2P1 NME/NM23 nucleoside diphosphate kinase 2 pseudogene 1 pseudogene pseudogene Approved 12q24.23 12q24.23 non-metastatic cells 2, protein (NM23B) expressed in, pseudogene 1 2004-03-11 2012-05-18 2016-10-05 283458 ENSG00000123009 OTTHUMG00000168971 NR_001577 O60361 NME2P1 +HGNC:7851 NME3 NME/NM23 nucleoside diphosphate kinase 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "DR-nm23|NM23-H3|NDPKC" non-metastatic cells 3, protein expressed in NME/NM23 family 961 1996-12-19 2012-05-18 2016-10-05 4832 ENSG00000103024 OTTHUMG00000128635 uc002cmm.4 U29656 NM_002513 CCDS10443 Q13232 "9067290|19852809" MGI:1930182 RGD:619879 NME3 601817 2.7.4.6 +HGNC:7852 NME4 NME/NM23 nucleoside diphosphate kinase 4 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "nm23-H4|NM23H4|NDPKD" non-metastatic cells 4, protein expressed in NME/NM23 family 961 1996-12-19 2012-05-18 2016-07-15 4833 ENSG00000103202 OTTHUMG00000047995 uc002cgz.4 Y07604 NM_005009 "CCDS10408|CCDS66886|CCDS73797" O00746 "9099850|19852809" MGI:1931148 RGD:1591334 NME4 601818 2.7.4.6 +HGNC:7853 NME5 NME/NM23 family member 5 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "nm23-H5|RSPH23" radial spoke 23 homolog (Chlamydomonas) non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase) NME/NM23 family 961 1998-02-26 2012-05-18 2014-11-19 8382 ENSG00000112981 OTTHUMG00000129207 uc003lce.4 Y14992 NM_003551 CCDS4197 P56597 "9742940|19852809" MGI:1922783 RGD:1583004 NME5 603575 +HGNC:20567 NME6 NME/NM23 nucleoside diphosphate kinase 6 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "NM23-H6|IPIA-ALPHA" non-metastatic cells 6, protein expressed in (nucleoside-diphosphate kinase) NME/NM23 family 961 2003-02-25 2012-05-18 2016-07-15 10201 ENSG00000172113 OTTHUMG00000133531 uc062jgf.1 AF051941 NM_005793 "CCDS2763|CCDS77733|CCDS77734|CCDS82767|CCDS82768" O75414 "10453732|19852809" MGI:1861676 RGD:61896 NME6 608294 2.7.4.6 +HGNC:20461 NME7 NME/NM23 family member 7 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "FLJ37194|NM23-H7|CFAP67" cilia and flagella associated protein 67 non-metastatic cells 7, protein expressed in (nucleoside-diphosphate kinase) NME/NM23 family 961 2003-02-24 2012-05-18 2016-07-15 29922 ENSG00000143156 OTTHUMG00000034586 uc001gfu.5 AF153191 NM_013330 "CCDS1277|CCDS44274" Q9Y5B8 19852809 MGI:2449121 RGD:619880 NME7 613465 2.7.4.6 +HGNC:16473 NME8 NME/NM23 family member 8 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "CILD6|SPTRX2|NM23-H8" sperm-specific thioredoxin 2 TXNDC3 thioredoxin domain containing 3 (spermatozoa) NME/NM23 family 961 2002-11-11 2012-05-18 2012-05-18 2016-10-05 51314 ENSG00000086288 OTTHUMG00000023716 uc003tfn.4 AF202051 NM_016616 CCDS5452 Q8N427 "11737268|11768308|19852809" MGI:1920662 RGD:735069 607421 138359 +HGNC:21343 NME9 NME/NM23 family member 9 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "TXL-2|NM23-H9" TXNDC6 "thioredoxin domain containing 6|NME gene family member 9|NME family member 9" NME/NM23 family 961 2004-05-12 2011-08-24 2012-05-18 2015-09-01 347736 ENSG00000181322 OTTHUMG00000159823 uc003esg.4 AF196568 NM_178130 CCDS3099 Q86XW9 "12569107|19852809" MGI:4359686 RGD:1564871 NME9 +HGNC:7854 NMI N-myc and STAT interactor protein-coding gene gene with protein product Approved 2q23.3 02q23.3 N-myc (and STAT) interactor 1999-02-18 2015-11-18 2016-10-05 9111 ENSG00000123609 OTTHUMG00000131867 uc002txi.3 U32849 NM_004688 CCDS2192 Q13287 "8668343|9989503" MGI:1928368 RGD:1311721 NMI 603525 +HGNC:17877 NMNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "NMNAT|PNAT1" LCA9 "nicotinamide nucleotide adenylyltransferase|Leber congenital amaurosis 9|Leber's congenital amaurosis 9" 2002-02-19 2003-05-02 2003-04-30 2014-11-19 64802 ENSG00000173614 OTTHUMG00000001799 uc001aqp.3 AF312734 XM_017002107 "CCDS108|CCDS72698" Q9HAN9 "11248244|11027696|22842227" MGI:1913704 RGD:1310996 NMNAT1 608700 310793 2.7.7.1 +HGNC:20024 NMNAT1P1 NMNAT1 pseudogene 1 pseudogene pseudogene Approved 14q31.1 14q31.1 NMNATP nicotinamide nucleotide adenylyltransferase pseudogene 2003-01-13 2013-09-20 2013-09-20 2014-11-19 326607 ENSG00000259167 OTTHUMG00000171431 NG_002596 PGOHUM00000248242 +HGNC:49164 NMNAT1P2 NMNAT1 pseudogene 2 pseudogene pseudogene Approved 1q23.3 01q23.3 2013-09-20 2013-09-20 100129160 ENSG00000225719 OTTHUMG00000034278 NG_022814 PGOHUM00000245053 +HGNC:49165 NMNAT1P3 NMNAT1 pseudogene 3 pseudogene pseudogene Approved 3q28 03q28 2013-09-20 2013-09-20 391603 ENSG00000238077 OTTHUMG00000156232 NG_022286 PGOHUM00000238298 +HGNC:49166 NMNAT1P4 NMNAT1 pseudogene 4 pseudogene pseudogene Approved 4q31.21 04q31.21 2013-09-20 2013-09-20 100132841 ENSG00000248745 OTTHUMG00000161593 NG_022084 PGOHUM00000246097 +HGNC:49167 NMNAT1P5 NMNAT1 pseudogene 5 pseudogene pseudogene Approved 15q22.2 15q22.2 2013-09-20 2013-09-20 100129256 ENSG00000259573 OTTHUMG00000172010 NG_022131 PGOHUM00000247137 +HGNC:16789 NMNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "KIAA0479|PNAT2" C1orf15 chromosome 1 open reading frame 15 2001-10-08 2003-05-02 2003-04-30 2016-10-05 23057 ENSG00000157064 OTTHUMG00000035519 uc001gqc.3 AF288395 NM_015039 "CCDS1353|CCDS1354" Q9BZQ4 "11318611|12359228" MGI:2444155 RGD:1307331 NMNAT2 608701 +HGNC:20989 NMNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding gene gene with protein product Approved 3q23 03q23 PNAT3 2003-04-30 2015-09-01 349565 ENSG00000163864 OTTHUMG00000159951 uc062ojj.1 AF345564 NM_178177 "CCDS3111|CCDS56282|CCDS82846" Q96T66 12574164 MGI:1921330 RGD:1309140 NMNAT3 608702 +HGNC:24987 NMRAL1 NmrA like redox sensor 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ25918|HSCARG|SDR48A1" short chain dehydrogenase/reductase family 48A, member 1 NmrA-like family domain containing 1 Short chain dehydrogenase/reductase superfamily 743 2006-05-10 2016-07-15 2016-07-15 57407 ENSG00000153406 OTTHUMG00000129468 uc059qfd.1 AF225419 NM_020677 CCDS10516 Q9HBL8 "18263583|19027726" MGI:1915074 RGD:1311451 NMRAL1 +HGNC:52332 NMRAL2P NmrA like redox sensor 2, pseudogene pseudogene pseudogene Approved 3q27.2 03q27.2 NMRAL1P1 NmrA like redox sensor 1 pseudogene 1 2016-07-22 2016-09-26 2016-09-26 2016-09-26 344887 ENSG00000171658 OTTHUMG00000156640 NR_033752 PGOHUM00000299687 +HGNC:26057 NMRK1 nicotinamide riboside kinase 1 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "FLJ20559|NRK1|bA235O14.2" ribosylnicotinamide kinase C9orf95 chromosome 9 open reading frame 95 2004-03-11 2012-03-30 2012-03-30 2016-10-05 54981 ENSG00000106733 OTTHUMG00000020034 uc004ajr.5 AK097144 NM_017881 "CCDS6650|CCDS47981|CCDS83374" Q9NWW6 15137942 MGI:2147434 RGD:1564687 NMRK1 608704 2.7.1.22 +HGNC:17871 NMRK2 nicotinamide riboside kinase 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MIBP|NRK2" "muscle-specific beta 1 integrin binding protein|nicotinamide riboside kinase 2" ITGB1BP3 integrin beta 1 binding protein 3 2003-12-15 2012-05-31 2012-05-31 2014-11-19 27231 ENSG00000077009 OTTHUMG00000181758 uc002lyz.4 AF190819 "NM_014446|NM_170678" "CCDS12115|CCDS74259" Q9NPI5 "10613898|15137942" MGI:1916814 RGD:6486791 608705 +HGNC:32203 NMS neuromedin S protein-coding gene gene with protein product Approved 2q11.2 02q11.2 prepro-NMS Endogenous ligands 542 2005-08-16 2014-11-19 129521 ENSG00000204640 OTTHUMG00000153142 uc002tan.1 AB164464 NM_001011717 CCDS33259 Q5H8A3 15635449 MGI:3583618 RGD:1359122 NMS +HGNC:7857 NMT1 N-myristoyltransferase 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 NMT "alternative, short form NMT-S|myristoyl-CoA:protein N-myristoyltransferase|long form, NMT-L" 1993-09-10 2012-10-02 4836 ENSG00000136448 OTTHUMG00000180003 uc002ihz.4 NM_021079 CCDS11494 P30419 1570339 MGI:102579 RGD:628642 NMT1 160993 +HGNC:7858 NMT2 N-myristoyltransferase 2 protein-coding gene gene with protein product Approved 10p13 10p13 1999-04-07 2014-11-19 9397 ENSG00000152465 OTTHUMG00000017723 uc001inz.2 AF043325 NM_004808 "CCDS7109|CCDS76284" O60551 9506952 MGI:1202298 RGD:1303175 NMT2 603801 +HGNC:34892 NMTRL-TAA1-1 nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 1-1 non-coding RNA RNA, transfer Approved 4q32.1 04q32.1 TRNAL31 transfer RNA leucine 31 (anticodon UAA) Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2016-02-16 100189325 HG984162 +HGNC:35097 NMTRL-TAA2-1 nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 2-1 non-coding RNA RNA, transfer Approved 2q14.1 02q14.1 TRNAL46P transfer RNA leucine 46 (anticodon UAA) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189522 HG984163 NG_008580 +HGNC:35095 NMTRL-TAA3-1 nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 3-1 non-coding RNA RNA, transfer Approved 1q43 01q43 TRNAL45P transfer RNA leucine 45 (anticodon UAA) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189520 HG984164 NG_008578 +HGNC:34945 NMTRL-TAA4-1 nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 4-1 non-coding RNA RNA, transfer Approved Xp11.21 Xp11.21 TRNAL37 transfer RNA leucine 37 (anticodon UAA) Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189377 HG984165 +HGNC:35038 NMTRL-TAA5-1 nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 5-1 non-coding RNA RNA, transfer Approved 20q13.31 20q13.31 TRNAL42P transfer RNA leucine 42 (anticodon UAA) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189466 HG984166 NG_008524 +HGNC:35027 NMTRL-TAA6-1 nuclear-encoded mitochondrial transfer RNA-Leu (TAA) 6-1 non-coding RNA RNA, transfer Approved 8q11.1 08q11.1 TRNAL41P "transfer RNA leucine 41 (anticodon UAA) pseudogene|transfer RNA-Leu (TAA) 6-1" Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189456 HG984167 NG_008513 +HGNC:35035 NMTRP-TGG1-1 nuclear-encoded mitochondrial transfer RNA-Pro (TGG) 1-1 non-coding RNA RNA, transfer Approved 1q43 01q43 TRNAP23P transfer RNA proline 23 (anticodon UGG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189463 HG984168 NG_008520 +HGNC:35033 NMTRQ-CTG1-1 nuclear-encoded mitochondrial transfer RNA-Gln (CTG) 1-1 non-coding RNA RNA, transfer Approved 10p12.31 10p12.31 TRNAQ38P transfer RNA glutamine 38 (anticodon CUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189461 HG984146 NG_008518 +HGNC:35048 NMTRQ-TTG1-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 1-1 non-coding RNA RNA, transfer Approved Xp11.21 Xp11.21 TRNAQ40P transfer RNA glutamine 40 (anticodon UUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189475 HG984147 NG_008533 +HGNC:35091 NMTRQ-TTG2-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 2-1 non-coding RNA RNA, transfer Approved 7q34 07q34 TRNAQ48P transfer RNA glutamine 48 (anticodon UUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189516 HG984148 NG_008574 +HGNC:34778 NMTRQ-TTG3-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 3-1 non-coding RNA RNA, transfer Approved 2q14.1 02q14.1 TRNAQ18 transfer RNA glutamine 18 (anticodon UUG) Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2016-02-16 100189215 HG984149 +HGNC:35062 NMTRQ-TTG4-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 4-1 non-coding RNA RNA, transfer Approved 3q13.12 03q13.12 TRNAQ42P transfer RNA glutamine 42 (anticodon UUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189489 HG984150 NG_008547 +HGNC:34965 NMTRQ-TTG5-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 5-1 non-coding RNA RNA, transfer Approved 16p13.3 16p13.3 TRNAQ31 "transfer RNA glutamine 31 (anticodon UUG)|transfer RNA-Gln (TTG) 5-1" Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2016-02-16 100189397 HG984151 +HGNC:35085 NMTRQ-TTG6-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 6-1 non-coding RNA RNA, transfer Approved 12q13.12 12q13.12 TRNAQ47P transfer RNA glutamine 47 (anticodon UUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189510 HG984152 NG_008568 +HGNC:35015 NMTRQ-TTG7-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 7-1 non-coding RNA RNA, transfer Approved 2q21.1 02q21.1 TRNAQ34P transfer RNA glutamine 34 (anticodon UUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189445 HG984153 NG_008501 +HGNC:35018 NMTRQ-TTG8-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 8-1 non-coding RNA RNA, transfer Approved Yp11.2 Yp11.2 TRNAQ35P transfer RNA glutamine 35 (anticodon UUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189448 HG984154 NG_008504 +HGNC:35022 NMTRQ-TTG9-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 9-1 non-coding RNA RNA, transfer Approved 2q21.1 02q21.1 TRNAQ36P transfer RNA glutamine 36 (anticodon UUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189451 HG984155 NG_008507 +HGNC:35099 NMTRQ-TTG10-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 10-1 non-coding RNA RNA, transfer Approved 13q13.3 13q13.3 TRNAQ50P transfer RNA glutamine 50 (anticodon UUG) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189524 HG984156 NG_008582 +HGNC:35076 NMTRQ-TTG11-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 11-1 non-coding RNA RNA, transfer Approved 8p12 08p12 TRNAQ43P "transfer RNA glutamine 43 (anticodon UUG) pseudogene|transfer RNA-Gln (TTG) 11-1" Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189501 HG984157 NG_008559 +HGNC:35051 NMTRQ-TTG12-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 12-1 non-coding RNA RNA, transfer Approved 17p11.2 17p11.2 TRNAQ41P "transfer RNA glutamine 41 (anticodon UUG) pseudogene|transfer RNA-Gln (TTG) 12-1" Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2015-10-26 100189478 ENSG00000242752 OTTHUMG00000178523 HG984158 NG_008536 +HGNC:35112 NMTRQ-TTG13-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 13-1 non-coding RNA RNA, transfer Approved 7p11.2 07p11.2 TRNAQ52P "transfer RNA glutamine 52 (anticodon UUG) pseudogene|transfer RNA-Gln (TTG) 13-1" Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189535 HG984159 NG_008593 +HGNC:34617 NMTRQ-TTG14-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 14-1 non-coding RNA RNA, transfer Approved 9p24.1 09p24.1 TRNAQ9 "transfer RNA glutamine 9 (anticodon UUG)|transfer RNA-Gln (TTG) 14-1" Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2016-02-16 100189058 HG984160 +HGNC:35117 NMTRQ-TTG15-1 nuclear-encoded mitochondrial transfer RNA-Gln (TTG) 15-1 non-coding RNA RNA, transfer Approved 4q32.1 04q32.1 TRNAQ54P "transfer RNA glutamine 54 (anticodon UUG) pseudogene|transfer RNA-Gln (TTG) 15-1" Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189540 HG984161 NG_008598 +HGNC:34614 NMTRS-TGA1-1 nuclear-encoded mitochondrial transfer RNA-Ser (TGA) 1-1 non-coding RNA RNA, transfer Approved 2q21.1 02q21.1 TRNAS8 transfer RNA serine 8 (anticodon UGA) Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2016-02-16 100189055 HG984169 +HGNC:35100 NMTRS-TGA2-1 nuclear-encoded mitochondrial transfer RNA-Ser (TGA) 2-1 non-coding RNA RNA, transfer Approved 2q21.1 02q21.1 TRNAS31P transfer RNA serine 31 (anticodon UGA) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189525 HG984170 NG_008583 +HGNC:35087 NMTRS-TGA3-1 nuclear-encoded mitochondrial transfer RNA-Ser (TGA) 3-1 non-coding RNA RNA, transfer Approved 17p11.2 17p11.2 TRNAS30P transfer RNA serine 30 (anticodon UGA) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2015-10-26 100189512 ENSG00000241225 OTTHUMG00000179090 HG984171 NG_008570 +HGNC:35088 NMTRV-TAC1-1 nuclear-encoded mitochondrial transfer RNA-Val (TAC) 1-1 non-coding RNA RNA, transfer Approved 6q25.3 06q25.3 TRNAV37P transfer RNA valine 37 (anticodon UAC) pseudogene Nuclear-encoded mitochondrial transfer RNAs 841 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189513 HG984172 NG_008571 +HGNC:7859 NMU neuromedin U protein-coding gene gene with protein product Approved 4q12 04q12 prepro-NMU Endogenous ligands 542 1999-08-06 2015-08-25 10874 ENSG00000109255 OTTHUMG00000102161 uc003hbc.3 X76029 XM_011534367 "CCDS3501|CCDS75125|CCDS77914" P48645 7619205 MGI:1860476 RGD:68388 NMU 605103 +HGNC:4518 NMUR1 neuromedin U receptor 1 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "GPC-R|FM-3|NMU1R" GPR66 G protein-coupled receptor 66 Neuromedin U receptors 239 1999-06-02 2004-05-28 2004-05-27 2014-11-19 10316 ENSG00000171596 OTTHUMG00000133225 uc002vry.5 AF044600 NM_006056 CCDS2486 Q9HB89 9782091 MGI:1341898 RGD:619867 NMUR1 604153 objectId:298 +HGNC:16454 NMUR2 neuromedin U receptor 2 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 NMU2R Neuromedin U receptors 239 2001-08-24 2004-05-28 2014-11-19 56923 ENSG00000132911 OTTHUMG00000130131 uc003luv.3 AF242874 NM_020167 CCDS4321 Q9GZQ4 "8940772|10894543" MGI:2441765 RGD:621155 NMUR2 605108 objectId:299 +HGNC:7860 NNAT neuronatin protein-coding gene gene with protein product Approved 20q11.23 20q11.23 Peg5 1996-07-29 2016-10-12 4826 ENSG00000053438 OTTHUMG00000032420 uc002xhd.4 NM_005386 "CCDS13296|CCDS13297" Q16517 "8660979|27109921" MGI:104716 RGD:620155 LRG_1048|http://www.lrg-sequence.org/LRG/LRG_1048 NNAT 603106 +HGNC:7861 NNMT nicotinamide N-methyltransferase protein-coding gene gene with protein product Approved 11q23.1 11q23.1 1994-04-18 2014-11-19 4837 ENSG00000166741 OTTHUMG00000168245 uc001por.2 U08021 NM_006169 CCDS8368 P40261 8575745 MGI:1099443 RGD:1309606 NNMT 600008 2.1.1.1 +HGNC:7862 NNO1 nanophthalmos 1 phenotype phenotype only Approved 11p13 11p13 1998-11-06 2003-07-30 23691 9792868 600165 +HGNC:7863 NNT nicotinamide nucleotide transhydrogenase protein-coding gene gene with protein product Approved 5p12 05p12 1999-11-16 2014-11-19 23530 ENSG00000112992 OTTHUMG00000096961 uc003joe.4 U40490 NM_182977 "CCDS3949|CCDS82994" Q13423 "9271681|9524818" MGI:109279 RGD:1587346 NNT 607878 304075 1.6.1.1 +HGNC:49005 NNT-AS1 NNT antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p12 05p12 2013-07-30 2013-07-30 100652772 ENSG00000248092 OTTHUMG00000162220 NR_073113 +HGNC:28473 NOA1 nitric oxide associated 1 protein-coding gene gene with protein product Approved 4q12 04q12 "MGC3232|hAtNOS1|hNOA1|MTG3" "nitric oxide synthase, mitochondrial (putative)|mitochondrial GTPase 3 homolog (S. cerevisiae)" C4orf14 chromosome 4 open reading frame 14 2004-01-28 2011-10-19 2011-10-19 2014-11-18 84273 ENSG00000084092 OTTHUMG00000128773 uc003hck.4 AK098215 NM_032313 CCDS3510 Q8NC60 "16380119|2118999|21771794|22447445" MGI:1914306 RGD:1359460 614919 +HGNC:29540 NOB1 NIN1/PSMD8 binding protein 1 homolog protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "NOB1P|ART-4|MST158" nin one binding protein PSMD8BP1 "PSMD8 binding protein 1|NIN1/RPN12 binding protein 1 homolog (S. cerevisiae)|NIN1/RPN12 binding protein 1 homolog" 2006-02-27 2006-04-20 2016-03-21 2016-03-21 28987 ENSG00000141101 OTTHUMG00000137576 uc002exs.5 AB026125 NM_014062 CCDS10884 Q9ULX3 16172919 MGI:1914869 RGD:735222 NOB1 613586 +HGNC:22448 NOBOX NOBOX oogenesis homeobox protein-coding gene gene with protein product Approved 7q35 07q35 "OG2|Og2x" newborn ovary homeobox-encoding gene PRD class homeoboxes and pseudogenes 521 2006-05-19 2014-11-19 135935 ENSG00000106410 OTTHUMG00000158051 uc064iya.1 XM_001134420 O60393 "11804785|16597639" MGI:108011 RGD:1563929 NOBOX 610934 8475 180166 +HGNC:24517 NOC2L NOC2 like nucleolar associated transcriptional repressor protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "DKFZP564C186|NET7|NET15|NIR|PPP1R112" "novel INHAT repressor|protein phosphatase 1, regulatory subunit 12" nucleolar complex associated 2 homolog (S. cerevisiae) Protein phosphatase 1 regulatory subunits 694 2005-08-01 2016-02-15 2016-02-15 26155 ENSG00000188976 OTTHUMG00000040720 uc001abz.5 AL050019 NM_015658 CCDS3 Q9Y3T9 "20123734|22363708" MGI:1931051 RGD:1309387 NOC2L 610770 +HGNC:52285 NOC2LP1 NOC2 like nucleolar associated transcriptional repressor pseudogene 1 pseudogene pseudogene Approved 2q21.1 02q21.1 2016-02-15 2016-02-15 643276 ENSG00000213225 OTTHUMG00000153749 NG_006964 PGOHUM00000298689 +HGNC:52286 NOC2LP2 NOC2 like nucleolar associated transcriptional repressor pseudogene 2 pseudogene pseudogene Approved 2q21.1 02q21.1 2016-02-15 2016-02-15 401010 ENSG00000217950 OTTHUMG00000153596 NR_002826 PGOHUM00000298143 +HGNC:24034 NOC3L NOC3 like DNA replication regulator protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "AD24|FLJ12820|FAD24" factor for adipocyte differentiation 24 C10orf117 "chromosome 10 open reading frame 117|nucleolar complex associated 3 homolog (S. cerevisiae)|NOC3-like DNA replication regulator" 2004-04-20 2005-08-01 2016-02-01 2016-02-01 64318 ENSG00000173145 OTTHUMG00000018788 uc001kjq.2 AL355341 NM_022451 CCDS7433 Q8WTT2 "15564382|18520036" MGI:1932610 RGD:1560656 NOC3L 610769 +HGNC:28461 NOC4L nucleolar complex associated 4 homolog protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "MGC3162|NET49|UTP19" nucleolar complex associated 4 homolog (S. cerevisiae) 2005-08-01 2015-07-03 2015-07-03 79050 ENSG00000184967 OTTHUMG00000168260 uc001ujz.1 NM_024078 CCDS9277 Q9BVI4 12446671 MGI:2140843 RGD:1310661 NOC4L 612819 +HGNC:14254 NOCT nocturnin protein-coding gene gene with protein product Approved 4q31.1 04q31.1 "CCR4L|Ccr4c|NOC" CCRN4L "CCR4-like (carbon catabolite repression 4, S.cerevisiae)|CCR4 carbon catabolite repression 4-like (S. cerevisiae)" 2000-12-14 2015-06-19 2015-06-19 2015-08-25 25819 ENSG00000151014 OTTHUMG00000161271 AF183961 NM_012118 CCDS3743 Q9UK39 "10521507|11394964" MGI:109382 RGD:1587344 608468 +HGNC:16390 NOD1 nucleotide binding oligomerization domain containing 1 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "NLRC1|CLR7.1" "nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 1|NLR family, CARD domain containing 1" CARD4 caspase recruitment domain family, member 4 "NLR family|Caspase recruitment domain containing" "666|959" 2001-12-11 2006-12-08 2015-11-19 2015-11-19 10392 ENSG00000106100 OTTHUMG00000023923 uc003tav.4 AF126484 XM_011515080 CCDS5427 Q9Y239 "10224040|10329646" MGI:1341839 RGD:1562269 NOD1 605980 objectId:1762 +HGNC:5331 NOD2 nucleotide binding oligomerization domain containing 2 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "BLAU|CD|PSORAS1|CLR16.3|NLRC2" "nucleotide-binding oligomerization domain, leucine rich repeat and CARD domain containing 2|NOD-like receptor C2|NLR family, CARD domain containing 2" "IBD1|CARD15" caspase recruitment domain family, member 15 "NLR family|Caspase recruitment domain containing" "666|959" 1998-07-10 2006-12-08 2015-11-19 2016-10-12 64127 ENSG00000167207 OTTHUMG00000133171 uc002egm.2 AF178930 NM_022162 CCDS10746 Q9HC29 "7809109|8587604" MGI:2429397 RGD:1306368 LRG_177|http://www.lrg-sequence.org/LRG/LRG_177 NOD2 605956 123845 objectId:1763 +HGNC:7865 NODAL nodal growth differentiation factor protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "nodal, mouse, homolog|nodal homolog (mouse)" 1998-06-05 2012-12-07 2014-11-19 4838 ENSG00000156574 OTTHUMG00000018408 uc001jrc.3 BC033585 NM_018055 CCDS7304 Q96S42 9354794 MGI:97359 RGD:1305994 NODAL 601265 281884 +HGNC:7866 NOG noggin protein-coding gene gene with protein product Approved 17q22 17q22 "SYNS1|SYM1" "synostoses (multiple) syndrome 1|symphalangism 1 (proximal)" 1999-03-24 2003-03-12 2015-08-25 9241 ENSG00000183691 OTTHUMG00000151770 uc002iup.2 U31202 NM_005450 CCDS11589 Q13253 "7666191|10080184|11545688" MGI:104327 RGD:3183 NOG 602991 123854 +HGNC:7868 NOL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:7869 NOL3 nucleolar protein 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "ARC|NOP30|MYP|CARD2" nucleolar protein 3 (apoptosis repressor with CARD domain) Caspase recruitment domain containing 959 1999-01-13 2015-11-27 2015-11-27 8996 ENSG00000140939 OTTHUMG00000173316 uc031qwo.2 AF043244 XM_011523424 "CCDS42176|CCDS58473|CCDS61960" O60936 9560245 MGI:1925938 RGD:708558 NOL3 605235 324240 +HGNC:7870 NOL4 nucleolar protein 4 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 "NOLP|HRIHFB2255|CT125" cancer/testis antigen 125 2000-02-11 2016-10-05 8715 ENSG00000101746 OTTHUMG00000132291 uc010dmi.3 AB017800 NM_003787 "CCDS11907|CCDS56058|CCDS56059|CCDS59308" O94818 9813152 MGI:2441684 RGD:1310663 NOL4 603577 +HGNC:16106 NOL4L nucleolar protein 4 like protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "dJ1184F4.2|DKFZP566G1424|dJ1184F4.4" hypothetical protein LOC140688 "C20orf113|C20orf112" "chromosome 20 open reading frame 113|chromosome 20 open reading frame 112" 2001-07-17 2014-05-07 2016-06-17 2016-06-17 140688 ENSG00000197183 OTTHUMG00000032219 AL034550 NM_080616 "CCDS13202|CCDS74718" Q96MY1 "11780052|15302935|20520637" MGI:1918765 RGD:1563510 +HGNC:19910 NOL6 nucleolar protein 6 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "bA311H10.1|Nrap|FLJ21959|MGC14896|MGC14921|MGC20838|UTP22" "nucleolar protein family 6 (RNA-associated)|nucleolar protein 6 (RNA-associated)" 2002-12-04 2015-11-27 2016-10-05 65083 ENSG00000165271 OTTHUMG00000000394 uc003zsz.4 AF361079 NM_022917 "CCDS6543|CCDS6544" Q9H6R4 "11895476|15590835" MGI:2140151 RGD:1308033 NOL6 611532 +HGNC:21040 NOL7 nucleolar protein 7 protein-coding gene gene with protein product Approved 6p23 06p23 "NOP27|RARG-1|dJ223E5.2" "C6orf90|PQBP3" "chromosome 6 open reading frame 90|polyglutamine binding protein 3|nucleolar protein 7, 27kDa" 2004-02-10 2015-11-09 2015-11-09 51406 ENSG00000225921 OTTHUMG00000014277 uc003naz.4 AF172066 NM_016167 CCDS4528 Q9UMY1 16205646 MGI:1917328 RGD:1565934 NOL7 611533 +HGNC:23387 NOL8 nucleolar protein 8 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "FLJ20736|Nop132" C9orf34 chromosome 9 open reading frame 34 RNA binding motif containing 725 2003-11-14 2004-01-14 2004-01-12 2016-10-05 55035 ENSG00000198000 OTTHUMG00000020221 uc064uhl.1 AB109030 NM_017948 "CCDS47993|CCDS59135|CCDS83384" Q76FK4 12477932 MGI:1918180 RGD:1309551 NOL8 611534 +HGNC:49557 NOL8P1 nucleolar protein 8 pseudogene 1 pseudogene pseudogene Approved 4q32.3 04q32.3 2014-01-14 2014-01-14 402191 ENSG00000248327 OTTHUMG00000161128 NG_008249 PGOHUM00000259922 +HGNC:26265 NOL9 nucleolar protein 9 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "FLJ23323|NET6|Grc3" polynucleotide 5'-kinase 5FMC ribosome biogenesis complex 1301 2005-08-08 2014-11-19 79707 ENSG00000162408 OTTHUMG00000000904 uc001ans.4 AK091284 NM_024654 CCDS80 Q5SY16 21063389 MGI:1921285 RGD:1566167 NOL9 +HGNC:25862 NOL10 nucleolar protein 10 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 FLJ14075 PQBP5 polyglutamine binding protein 5 2005-08-08 2015-08-25 79954 ENSG00000115761 OTTHUMG00000119023 uc002raq.4 AK024137 NM_024894 "CCDS1673|CCDS58697|CCDS58698" Q9BSC4 12477932 MGI:2684913 RGD:1359447 NOL10 616197 +HGNC:24557 NOL11 nucleolar protein 11 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 DKFZP586L0724 2005-08-08 2015-08-25 25926 ENSG00000130935 OTTHUMG00000179777 uc002jgd.2 AK023702 NM_015462 CCDS11671 Q9H8H0 12477932 MGI:1916229 RGD:1584081 NOL11 615366 +HGNC:28585 NOL12 nucleolar protein 12 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "MGC3731|Nop25|RRP17" 2006-06-23 2015-01-29 79159 ENSG00000273899 OTTHUMG00000150660 uc003atp.4 Z83844 NM_024313 CCDS13955 Q9UGY1 12477932 MGI:2146285 RGD:1305327 NOL12 +HGNC:15608 NOLC1 nucleolar and coiled-body phosphoprotein 1 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "P130|KIAA0035|NOPP140|NOPP130" 2001-05-17 2014-11-18 9221 ENSG00000166197 OTTHUMG00000018944 uc001kuo.4 Z34289 NM_004741 "CCDS7530|CCDS65925|CCDS65926" Q14978 "7657714|10567578" MGI:1918019 RGD:621578 NOLC1 602394 +HGNC:13244 NOM1 nucleolar protein with MIF4G domain 1 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "SGD1|PPP1R113" protein phosphatase 1, regulatory subunit 113 C7orf3 chromosome 7 open reading frame 3 Protein phosphatase 1 regulatory subunits 694 2000-12-20 2005-03-30 2005-03-30 2015-08-25 64434 ENSG00000146909 OTTHUMG00000152639 uc003wmy.3 AF107455 NM_138400 CCDS34787 Q5C9Z4 10329000 MGI:1861749 RGD:1588109 NOM1 611269 +HGNC:30060 NOMO1 NODAL modulator 1 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 PM5 2004-09-10 2014-11-19 23420 ENSG00000103512 OTTHUMG00000090541 uc002dcv.4 X57398 NM_014287 CCDS10556 Q15155 "1310294|15257293" MGI:2385850 RGD:1305240 NOMO1 609157 +HGNC:22652 NOMO2 NODAL modulator 2 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "NOMO|PM5" 2004-09-10 2015-09-04 283820 ENSG00000185164 OTTHUMG00000131366 uc032dtk.2 AL512687 NM_001004060 "CCDS10570|CCDS32394" Q5JPE7 15257293 MGI:2385850 NOMO2 609158 +HGNC:25242 NOMO3 NODAL modulator 3 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 2004-09-29 2015-09-01 408050 ENSG00000103226 OTTHUMG00000177317 uc002deq.4 AK125530 NM_001004067 CCDS42123 P69849 15257293 MGI:2385850 NOMO3 609159 +HGNC:7871 NONO non-POU domain containing, octamer-binding protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "NRB54|NMT55|P54NRB|P54|PPP1R114" "Nuclear RNA-binding protein, 54-kD|non-Pou domain-containing octamer (ATGCAAAT) binding protein|protein phosphatase 1, regulatory subunit 114" non-POU-domain-containing, octamer-binding "Protein phosphatase 1 regulatory subunits|RNA binding motif containing" "694|725" 1992-02-06 2002-01-14 2014-11-19 4841 ENSG00000147140 OTTHUMG00000021798 uc004dzn.5 L14599 NM_007363 "CCDS14410|CCDS55445" Q15233 "8371983|9360842" MGI:1855692 RGD:1549738 NONO 300084 326751 +HGNC:42031 NONOP1 non-POU domain containing, octamer-binding pseudogene 1 pseudogene pseudogene Approved 16q22.1 16q22.1 2011-06-01 2014-11-18 644035 NG_009842 PGOHUM00000248919 +HGNC:42032 NONOP2 non-POU domain containing, octamer-binding pseudogene 2 pseudogene pseudogene Approved 2p16.1 02p16.1 2011-06-01 2014-11-18 100271700 ENSG00000237522 OTTHUMG00000155384 NG_009843 PGOHUM00000240055 +HGNC:7867 NOP2 NOP2 nucleolar protein protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "NOP120|NSUN1|p120" NOP2/Sun domain family, member 1 NOL1 "nucleolar protein 1 (120kD)|nucleolar protein 1, 120kDa|nucleolar protein 2 homolog (yeast)|NOP2 nucleolar protein homolog (yeast)" NOP2/Sun RNA methyltransferase family 664 1994-02-23 2008-10-13 2012-12-10 2016-10-05 4839 ENSG00000111641 OTTHUMG00000169163 uc058kgw.1 NM_006170 "CCDS44811|CCDS58202|CCDS58203|CCDS58204" P46087 8088812 MGI:107891 RGD:1304616 NOP2 164031 +HGNC:19826 NOP9 NOP9 nucleolar protein protein-coding gene gene with protein product Approved 14q12 14q12 C14orf21 "chromosome 14 open reading frame 21|NOP9 nucleolar protein homolog (yeast)" 2003-01-13 2012-06-06 2012-12-10 2015-08-25 161424 ENSG00000196943 OTTHUMG00000029342 uc001wol.3 XM_011536527 "CCDS9624|CCDS66616" Q86U38 21653694 MGI:1915092 RGD:1308396 +HGNC:14378 NOP10 NOP10 ribonucleoprotein protein-coding gene gene with protein product Approved 15q14 15q14 "NOP10P|MGC70651" homolog of yeast Nop10p NOLA3 "nucleolar protein family A, member 3 (H/ACA small nucleolar RNPs)|NOP10 ribonucleoprotein homolog (yeast)" H/ACA ribonucleoprotein complex 1221 2001-02-06 2008-10-13 2012-12-10 2016-10-12 55505 ENSG00000182117 OTTHUMG00000129440 uc001zie.2 AB043103 NM_018648 CCDS10037 Q9NPE3 "11074001|9843512" MGI:1913431 RGD:1582780 LRG_345|http://www.lrg-sequence.org/LRG/LRG_345 NOP10 606471 159137 +HGNC:16821 NOP14 NOP14 nucleolar protein protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "RES4-25|UTP2" NOP14 homolog (S. cerevisiae) "C4orf9|NOL14" "chromosome 4 open reading frame 9|nucleolar protein 14|nucleolar protein 14 homolog (yeast)|NOP14 nucleolar protein homolog (yeast)" 2003-01-08 2008-10-13 2012-12-10 2014-11-18 8602 ENSG00000087269 OTTHUMG00000159911 uc003ggl.4 AB000467 NM_003703 "CCDS33945|CCDS77893" P78316 "9734812|11694595" MGI:1922666 RGD:1305605 NOP14 611526 +HGNC:20205 NOP14-AS1 NOP14 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4p16.3 04p16.3 RES4-24 C4orf10 "chromosome 4 open reading frame 10|NOP14 antisense RNA 1 (non-protein coding)" 2003-01-08 2012-02-24 2012-08-15 2012-10-12 317648 ENSG00000249673 OTTHUMG00000160136 uc003ggi.1 AB000465 NR_015453 9734812 +HGNC:26934 NOP16 NOP16 nucleolar protein protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "HSPC111|HSPC185|LOC51491" "hypothetical protein HSPC111|HBV pre-S2 trans-regulated protein 3" "nucleolar protein 16 homolog (yeast)|NOP16 nucleolar protein homolog (yeast)" 2008-10-03 2012-12-10 2016-04-25 51491 ENSG00000048162 OTTHUMG00000163186 uc032vuv.2 NM_016391 "CCDS43403|CCDS58991|CCDS78091" Q9Y3C1 "10810093|11042152" MGI:107862 RGD:1305727 NOP16 612861 +HGNC:15911 NOP56 NOP56 ribonucleoprotein protein-coding gene gene with protein product Approved 20p13 20p13 SCA36 spinocerebellar ataxia 36 NOL5A "nucleolar protein 5A (56kD with KKE/D repeat)|nucleolar protein 5A (56kDa with KKE/D repeat)|NOP56 ribonucleoprotein homolog (yeast)" 2001-06-21 2009-01-13 2012-12-10 2014-11-18 10528 ENSG00000101361 OTTHUMG00000031703 uc002wgh.4 Y12065 NM_006392 CCDS13030 O00567 "9372940|21683323" MGI:1914384 RGD:1308892 NOP56 614154 279649 +HGNC:13962 NOP56P1 NOP56 ribonucleoprotein pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "NOP56-L|dJ207F6.1" "NOL5B|NOL5BP" "nucleolar protein 5B|nucleolar protein 5B pseudogene|NOP56 ribonucleoprotein homolog (yeast) pseudogene 1" 2003-11-27 2009-05-07 2012-12-10 2016-10-05 646192 ENSG00000235559 OTTHUMG00000031045 NG_006572 PGOHUM00000260120 +HGNC:49800 NOP56P2 NOP56 ribonucleoprotein pseudogene 2 pseudogene pseudogene Approved 9p21.3 09p21.3 2014-02-21 2014-02-21 402360 ENSG00000226626 OTTHUMG00000019701 NG_023280 PGOHUM00000236415 +HGNC:49801 NOP56P3 NOP56 ribonucleoprotein pseudogene 3 pseudogene pseudogene Approved 12q21.2 12q21.2 2014-02-21 2014-02-21 106481967 ENSG00000257956 OTTHUMG00000170066 NG_043307 PGOHUM00000258682 +HGNC:29926 NOP58 NOP58 ribonucleoprotein protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "NOP5|HSPC120" NOP58 ribonucleoprotein homolog (yeast) 2009-01-13 2012-12-10 2014-11-19 51602 ENSG00000055044 OTTHUMG00000132840 uc002uzb.4 NM_015934 CCDS2353 Q9Y2X3 "10606270|10925205" MGI:1933184 RGD:620484 NOP58 616742 +HGNC:44311 NORAD non-coding RNA activated by DNA damage non-coding RNA RNA, long non-coding Approved 20q11.23 20q11.23 LINC00657 long intergenic non-protein coding RNA 657 Long non-coding RNAs 788 2012-08-09 2015-12-24 2015-12-24 2016-08-04 647979 ENSG00000260032 OTTHUMG00000175580 uc061wse.1 "AI619767|AK090641|BC011592" NR_027451 26724866 617037 +HGNC:7872 NOS1 nitric oxide synthase 1 protein-coding gene gene with protein product Approved 12q24.22 12q24.22 nNOS NOS nitric oxide synthase 1 (neuronal) PDZ domain containing 1220 1992-06-09 2015-12-04 2015-12-04 4842 ENSG00000089250 OTTHUMG00000137376 uc001twm.3 XM_017019345 "CCDS41842|CCDS55890" P29475 "1385308|7682706" MGI:97360 RGD:3184 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=NOS1 NOS1 163731 426568 objectId:1251 1.14.13.39 +HGNC:16859 NOS1AP nitric oxide synthase 1 adaptor protein protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "KIAA0464|CAPON" C-terminal PDZ domain ligand of neuronal nitric oxide synthase nitric oxide synthase 1 (neuronal) adaptor protein 2005-06-15 2015-12-04 2015-12-04 9722 ENSG00000198929 OTTHUMG00000024049 uc001gbv.3 AB007933 NM_014697 "CCDS1237|CCDS44267|CCDS53421" O75052 "9455484|9459447" MGI:1917979 RGD:620106 NOS1AP 605551 289008 +HGNC:7873 NOS2 nitric oxide synthase 2 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "iNOS|NOS|HEP-NOS" NOS2A "nitric oxide synthase 2A (inducible, hepatocytes)|nitric oxide synthase 2, inducible" 1993-06-15 2008-09-16 2015-12-04 2015-12-04 4843 ENSG00000007171 OTTHUMG00000132445 uc002gzu.4 U20141 NM_000625 CCDS11223 P35228 7682706 MGI:97361 RGD:3185 NOS2 163730 objectId:1250 1.14.13.39 +HGNC:7875 NOS2P1 nitric oxide synthase 2 pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 NOS2C "nitric oxide synthase 2C|nitric oxide synthase 2C (pseudogene)" 1995-04-13 2008-09-16 2008-09-16 2014-03-20 645740 ENSG00000264216 OTTHUMG00000179197 U18335 NG_006943 7558036 600720 PGOHUM00000237000 +HGNC:7874 NOS2P2 nitric oxide synthase 2 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 NOS2B "nitric oxide synthase 2B|nitric oxide synthase 2B (pseudogene)" 1995-04-13 2008-09-16 2008-09-16 2014-06-12 201288 ENSG00000167494 OTTHUMG00000059253 U18333 NG_001568 7558036 600719 PGOHUM00000250807 +HGNC:35124 NOS2P3 nitric oxide synthase 2 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2008-09-16 2014-03-20 339256 ENSG00000230528 OTTHUMG00000130731 NG_002717 11997339 PGOHUM00000237285 +HGNC:50720 NOS2P4 nitric oxide synthase 2 pseudogene 4 pseudogene pseudogene Approved 17p11.2 17p11.2 2014-06-12 2014-06-12 266619 ENSG00000264892 OTTHUMG00000179841 NG_002365 PGOHUM00000237242 +HGNC:7876 NOS3 nitric oxide synthase 3 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "ECNOS|eNOS" endothelial nitric oxide synthase nitric oxide synthase 3 (endothelial cell) 1993-08-23 2015-11-26 2016-10-05 4846 ENSG00000164867 OTTHUMG00000158343 uc003wif.4 NM_000603 "CCDS5912|CCDS55182|CCDS55183" P29474 1379542 MGI:97362 RGD:3186 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=NOS3 NOS3 163729 objectId:1249 1.14.13.39 +HGNC:17946 NOSIP nitric oxide synthase interacting protein protein-coding gene gene with protein product Approved 19q13.3 19q13.3 CGI-25 2003-01-06 2014-11-19 51070 ENSG00000142546 OTTHUMG00000183169 uc002pol.5 AF132959 XM_011527015 CCDS12772 Q9Y314 "11149895|10810093" MGI:1913644 RGD:1309992 NOSIP 616759 +HGNC:20203 NOSTRIN nitric oxide synthase trafficking protein-coding gene gene with protein product Approved 2q24.3 02q24.3 MGC20702 nitric oxide synthase trafficker F-BAR domain containing 1288 2003-01-06 2013-08-05 2016-10-05 115677 ENSG00000163072 OTTHUMG00000153990 uc002ueg.4 AJ532842 NM_052946 "CCDS42771|CCDS42772|CCDS54415|CCDS54416" Q8IVI9 12446846 MGI:3606242 RGD:727920 NOSTRIN 607496 +HGNC:7881 NOTCH1 notch 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 TAN1 "Notch (Drosophila) homolog 1 (translocation-associated)|Notch homolog 1, translocation-associated (Drosophila)" Ankyrin repeat domain containing 403 1992-02-13 2010-06-24 2015-09-01 4851 ENSG00000148400 OTTHUMG00000020935 uc004chz.4 AF308602 NM_017617 CCDS43905 P46531 1831692 MGI:97363 RGD:3187 NOTCH1 190198 123361 objectId:2861 +HGNC:7882 NOTCH2 notch 2 protein-coding gene gene with protein product Approved 1p12 01p12 "Notch (Drosophila) homolog 2|Notch homolog 2 (Drosophila)" Ankyrin repeat domain containing 403 1994-11-10 2010-06-24 2016-10-05 4853 ENSG00000134250 OTTHUMG00000012177 uc001eik.4 AF315356 NM_024408 CCDS908 Q04721 7698746 MGI:97364 RGD:3188 NOTCH2 600275 123858 objectId:2859 +HGNC:31862 NOTCH2NL notch 2 N-terminal like protein-coding gene gene with protein product Approved 1q21.1 01q21.1 N2N Notch homolog 2 (Drosophila) N-terminal like 2004-12-02 2010-06-24 2016-10-05 388677 ENSG00000264343 OTTHUMG00000013754 uc031uty.2 NM_203458 CCDS72880 Q7Z3S9 14673143 NOTCH2NL +HGNC:44253 NOTCH2P1 notch 2 pseudogene 1 pseudogene pseudogene Approved 1p12 01p12 2012-07-25 2012-07-25 100420260 ENSG00000226446 OTTHUMG00000057603 NG_027134 PGOHUM00000244876 +HGNC:7883 NOTCH3 notch 3 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 CASIL CADASIL "Notch (Drosophila) homolog 3|Notch homolog 3 (Drosophila)" Ankyrin repeat domain containing 403 1994-07-04 2010-06-24 2016-01-15 4854 ENSG00000074181 OTTHUMG00000183217 uc002nan.4 U97669 NM_000435 CCDS12326 Q9UM47 7835890 MGI:99460 RGD:620761 "NOTCH3 - CADASIL (Cerebral Autosomal Dominant Arteriopathy with Subcortical|http://www.LOVD.nl/NOTCH3|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=NOTCH3" NOTCH3 600276 123860 objectId:2860 +HGNC:7884 NOTCH4 notch 4 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 INT3 "Notch (Drosophila) homolog 4|Notch homolog 4 (Drosophila)" Ankyrin repeat domain containing 403 1994-07-04 2010-06-24 2016-10-05 4855 ENSG00000204301 OTTHUMG00000031044 uc003obb.3 NM_004557 CCDS34420 Q99466 7835890 MGI:107471 RGD:1303282 NOTCH4 164951 objectId:2862 +HGNC:31839 NOTO notochord homeobox protein-coding gene gene with protein product Approved 2p13.2 02p13.2 notochord homolog (Xenopus laevis) NKL subclass homeoboxes and pseudogenes 519 2004-10-29 2007-02-15 2015-08-25 344022 ENSG00000214513 OTTHUMG00000164128 uc010yrd.3 XM_292889 CCDS46335 A8MTQ0 15231714 MGI:3053002 RGD:1562910 NOTO 8552 +HGNC:27106 NOTUM NOTUM, palmitoleoyl-protein carboxylesterase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 [Wnt protein] O-palmitoleoyl-L-serine hydrolase notum pectinacetylesterase homolog (Drosophila) 2005-11-22 2016-04-01 2016-04-01 147111 ENSG00000185269 OTTHUMG00000154416 uc010wvg.3 BC060882 NM_178493 CCDS32771 Q6P988 25731175 MGI:1924833 RGD:1307119 NOTUM 609847 3.1.1.98 +HGNC:7885 NOV nephroblastoma overexpressed protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "IGFBP9|CCN3" nephroblastoma overexpressed gene CYR61/CTGF/NOV matricellular proteins 1046 1993-11-05 2012-02-27 2014-11-19 4856 ENSG00000136999 OTTHUMG00000164984 uc003yoq.3 X96584 NM_002514 CCDS6328 P48745 1334251 MGI:109185 RGD:621553 NOV 164958 +HGNC:7886 NOVA1 NOVA alternative splicing regulator 1 protein-coding gene gene with protein product Approved 14q12 14q12 neuro-oncological ventral antigen 1 1998-01-16 2016-05-03 2016-05-03 4857 ENSG00000139910 OTTHUMG00000029385 uc001wpy.4 U04840 NM_006491 "CCDS9635|CCDS32060|CCDS32061" P51513 8558240 MGI:104297 RGD:621345 NOVA1 602157 +HGNC:19827 NOVA1-AS1 NOVA1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 14q12 14q12 C14orf22 "chromosome 14 open reading frame 22|NOVA1 antisense RNA 1 (non-protein coding)|NOVA1 antisense RNA 1" 2003-01-13 2011-11-25 2012-10-15 2016-08-22 102725045 ENSG00000257842 OTTHUMG00000170389 uc059ajd.1 AI278049 XR_943644 +HGNC:7887 NOVA2 NOVA alternative splicing regulator 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 ANOVA neuro-oncological ventral antigen 3 NOVA3 neuro-oncological ventral antigen 2 1998-01-16 2016-05-03 2016-05-03 4858 ENSG00000104967 OTTHUMG00000177499 uc002pdv.3 U70477 NM_002516 CCDS12679 Q9UNW9 "9344654|10368286" MGI:104296 RGD:1308032 NOVA2 601991 +HGNC:7889 NOX1 NADPH oxidase 1 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "NOH1|NOH-1|MOX1|GP91-2" "mitogenic oxidase (pyridine nucleotide-dependent superoxide-generating)|NADPH oxidase homolog-1|NADPH oxidase 1 variant NOH-1L" 2000-03-24 2016-10-05 27035 ENSG00000007952 OTTHUMG00000022007 uc004egj.3 AF127763 NM_007052 "CCDS14474|CCDS14475|CCDS65298" Q9Y5S8 "10485709|10615049" MGI:2450016 RGD:620598 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NOX1 NOX1 300225 +HGNC:7890 NOX3 NADPH oxidase 3 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 GP91-3 2000-05-30 2015-09-01 50508 ENSG00000074771 OTTHUMG00000015883 uc003qqm.4 AF190122 NM_015718 CCDS5250 Q9HBY0 11376945 MGI:2681162 RGD:1303190 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=NOX3 NOX3 607105 +HGNC:7891 NOX4 NADPH oxidase 4 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 "KOX-1|KOX" 2000-05-30 2016-10-05 50507 ENSG00000086991 OTTHUMG00000167298 uc001pct.4 AF254621 NM_016931 "CCDS8285|CCDS44695|CCDS44696|CCDS73361|CCDS73362" Q9NPH5 MGI:1354184 RGD:620600 NOX4 605261 +HGNC:14874 NOX5 NADPH oxidase 5 protein-coding gene gene with protein product Approved 15q23 15q23 "NOX5A|NOX5B" NADPH oxidase, EF-hand calcium binding domain 5 EF-hand domain containing 863 2001-03-05 2016-06-21 2016-10-05 79400 ENSG00000255346 OTTHUMG00000133320 uc002arr.3 AF317889 NM_024505 "CCDS32276|CCDS53953|CCDS53954" Q96PH1 11483596 NOX5 606572 +HGNC:10668 NOXA1 NADPH oxidase activator 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "NY-CO-31|FLJ25475" SDCCAG31 serologically defined colon cancer antigen 31 1999-08-25 2002-12-13 2002-12-09 2015-08-25 10811 ENSG00000188747 OTTHUMG00000131781 uc004cmu.4 AF039697 XM_011518158 "CCDS7042|CCDS59157" Q86UR1 9610721 MGI:2449980 RGD:1306687 NOXA1 611255 +HGNC:19404 NOXO1 NADPH oxidase organizer 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "P41NOXA|P41NOXB|P41NOXC|SH3PXD5|SNX28" 2002-12-09 2014-11-19 124056 ENSG00000196408 OTTHUMG00000128707 uc002cnx.5 AF532985 XM_017022927 "CCDS10454|CCDS10455|CCDS42101|CCDS58406" Q8NFA2 MGI:1919143 RGD:1307802 NOXO1 611256 +HGNC:20487 NOXRED1 NADP dependent oxidoreductase domain containing 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FLJ32809 C14orf148 chromosome 14 open reading frame 148 2004-06-11 2011-09-30 2016-06-08 2016-06-08 122945 ENSG00000165555 OTTHUMG00000171554 uc001xtr.4 AK057371 NM_138791 CCDS45142 Q6NXP6 MGI:1918525 RGD:1589353 NOXRED1 +HGNC:1190 NPAP1 nuclear pore associated protein 1 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 C15orf2 chromosome 15 open reading frame 2 1999-10-22 2012-06-14 2012-06-14 2014-12-01 23742 ENSG00000185823 OTTHUMG00000129179 uc001ywo.4 AF179681 NM_018958 CCDS10015 Q9NZP6 "10783265|22694955" 610922 +HGNC:45018 NPAP1P1 nuclear pore associated protein 1 pseudogene 1 pseudogene pseudogene Approved 10q11.23 10q11.23 2013-01-08 2014-12-01 100420827 NG_025503 PGOHUM00000290162 +HGNC:45019 NPAP1P2 nuclear pore associated protein 1 pseudogene 2 pseudogene pseudogene Approved 10q22.3 10q22.3 2013-01-08 2014-12-01 100420829 ENSG00000214695 OTTHUMG00000018588 NG_025525 PGOHUM00000290217 +HGNC:45020 NPAP1P3 nuclear pore associated protein 1 pseudogene 3 pseudogene pseudogene Approved 10q23.2 10q23.2 2013-01-08 2014-12-01 100420830 ENSG00000237740 OTTHUMG00000018676 NG_025530 PGOHUM00000290233 +HGNC:45021 NPAP1P4 nuclear pore associated protein 1 pseudogene 4 pseudogene pseudogene Approved 9q21.31 09q21.31 2013-01-08 2014-12-01 100533674 ENSG00000236521 OTTHUMG00000020076 NG_028721 PGOHUM00000303949 +HGNC:45022 NPAP1P5 nuclear pore associated protein 1 pseudogene 5 pseudogene pseudogene Approved 9q22.1 09q22.1 2013-01-08 2014-12-01 100420671 NG_023843 PGOHUM00000303965 +HGNC:45023 NPAP1P6 nuclear pore associated protein 1 pseudogene 6 pseudogene pseudogene Approved 9q21.31 09q21.31 2013-01-08 2014-12-01 100533675 ENSG00000238002 OTTHUMG00000020073 NG_028726 PGOHUM00000304341 +HGNC:51473 NPAP1P7 nuclear pore associated protein 1 pseudogene 7 pseudogene pseudogene Approved 9q22.1 09q22.1 2014-12-01 2014-12-01 107161163 ENSG00000277357 OTTHUMG00000187817 NG_046704 PGOHUM00000304364 +HGNC:51474 NPAP1P8 nuclear pore associated protein 1 pseudogene 8 pseudogene pseudogene Approved 9q21.32 09q21.32 2014-12-01 2014-12-01 100420670 NG_023837 PGOHUM00000303956 +HGNC:7894 NPAS1 neuronal PAS domain protein 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "MOP5|PASD5|bHLHe11" "neuronal PAS1|member of PAS superfamily 5" Basic helix-loop-helix proteins 420 1998-05-29 2016-01-15 4861 ENSG00000130751 OTTHUMG00000183440 uc002pfw.4 U77968 NM_002517 "CCDS12694|CCDS82371" Q99742 "9012850|9079689" MGI:109205 RGD:1310040 NPAS1 603346 +HGNC:7895 NPAS2 neuronal PAS domain protein 2 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "MOP4|PASD4|bHLHe9" Basic helix-loop-helix proteins 420 1998-05-29 2015-08-25 4862 ENSG00000170485 OTTHUMG00000130675 uc002tap.2 U77970 XM_005263953 CCDS2048 Q99743 "9012850|9079689" MGI:109232 RGD:1309681 NPAS2 603347 +HGNC:19311 NPAS3 neuronal PAS domain protein 3 protein-coding gene gene with protein product Approved 14q13.1 14q13.1 "MOP6|PASD6|bHLHe12" Basic helix-loop-helix proteins 420 2002-11-05 2014-11-18 64067 ENSG00000151322 OTTHUMG00000140215 uc001wrt.4 AF164438 XM_017021582 "CCDS9645|CCDS53891|CCDS53892|CCDS55912" Q8IXF0 MGI:1351610 RGD:1307181 NPAS3 609430 +HGNC:18983 NPAS4 neuronal PAS domain protein 4 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "PASD10|NXF|Le-PAS|bHLHe79" Basic helix-loop-helix proteins 420 2005-09-26 2014-11-19 266743 ENSG00000174576 OTTHUMG00000167045 uc001ohx.2 AB049469 NM_178864 CCDS8138 Q8IUM7 14701734 MGI:2664186 RGD:628866 NPAS4 608554 +HGNC:7896 NPAT nuclear protein, coactivator of histone transcription protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "E14|p220" nuclear protein, ataxia-telangiectasia locus 1998-01-20 2016-05-24 2016-10-05 4863 ENSG00000149308 OTTHUMG00000166385 uc001pjz.6 X97186 NM_002519 CCDS41710 Q14207 9205109 MGI:107605 RGD:1311947 NPAT 601448 +HGNC:30099 NPB neuropeptide B protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "PPL7|PPNPB" prepro-NPB Endogenous ligands 542 2005-11-14 2014-11-19 256933 ENSG00000183979 OTTHUMG00000177983 uc002kcd.4 NM_148896 CCDS11790 Q8NG41 "12118011|12401809" MGI:2387153 RGD:708513 NPB 607996 +HGNC:4522 NPBWR1 neuropeptides B/W receptor 1 protein-coding gene gene with protein product Approved 8q11.23 08q11.23 GPR7 G protein-coupled receptor 7 Neuropeptide receptors 854 1994-07-25 2006-02-15 2006-02-15 2015-07-22 2831 ENSG00000183729 OTTHUMG00000164275 uc011ldu.3 BC033145 NM_005285 CCDS6151 P48145 "7590751|12401809" MGI:891989 RGD:1305917 NPBWR1 600730 objectId:303 +HGNC:4530 NPBWR2 neuropeptides B/W receptor 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 GPR8 G protein-coupled receptor 8 Neuropeptide receptors 854 1994-07-25 2006-02-15 2006-02-15 2016-10-05 2832 ENSG00000125522 OTTHUMG00000033032 uc011abt.3 U22492 NM_005286 CCDS13557 P48146 12401809 NPBWR2 600731 objectId:304 +HGNC:7897 NPC1 NPC intracellular cholesterol transporter 1 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 Niemann-Pick disease, type C1 1993-04-13 2016-05-03 2016-05-03 4864 ENSG00000141458 OTTHUMG00000131873 uc002kum.5 AF002020 NM_000271 CCDS11878 O15118 8446622 MGI:1097712 RGD:628693 NPC1 607623 123868 +HGNC:7898 NPC1L1 NPC1 like intracellular cholesterol transporter 1 protein-coding gene gene with protein product Approved 7p13 07p13 "NPC1 (Niemann-Pick disease, type C1, gene)-like 1|NPC1-like 1|NPC1 like 1" 2000-02-29 2016-05-03 2016-05-03 29881 ENSG00000015520 OTTHUMG00000023691 uc003tlb.4 NM_013389 "CCDS5491|CCDS43575|CCDS75587" Q9UHC9 10783261 MGI:2685089 RGD:1303135 NPC1L1 608010 421441 objectId:2629 +HGNC:14537 NPC2 NPC intracellular cholesterol transporter 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "HE1|NP-C2|EDDM1" epididymal protein 1 Niemann-Pick disease, type C2 2001-05-11 2016-05-03 2016-05-03 10577 ENSG00000119655 OTTHUMG00000171212 uc010tus.3 X67698 NM_006432 CCDS32121 P61916 "8418812|11125141" MGI:1915213 RGD:628756 NPC2 601015 123870 +HGNC:13392 NPCDR1 nasopharyngeal carcinoma, down-regulated 1 other unknown Approved 3p14.2 not on reference assembly 03p14.2 not on reference assembly NPCR 2004-06-09 2015-02-04 246734 AF134979 Q9BY65 +HGNC:7899 NPDC1 neural proliferation, differentiation and control 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "DKFZp586J0523|CAB-|CAB1" 2000-08-11 2016-06-15 2016-09-09 56654 ENSG00000107281 OTTHUMG00000020956 uc004ckt.3 AF285836 NM_015392 CCDS7024 Q9NQX5 11245976 MGI:1099802 RGD:1303156 NPDC1 605798 +HGNC:16244 NPEPL1 aminopeptidase-like 1 protein-coding gene gene with protein product Approved 20q13.32 20q13.32 "FLJ11583|bA261P9.2" Aminopeptidases 104 2001-07-17 2008-07-02 79716 ENSG00000215440 OTTHUMG00000033060 uc010zzs.2 AK021645 NM_024663 "CCDS46621|CCDS56200|CCDS56201" Q8NDH3 14702039 MGI:2448523 RGD:1311351 NPEPL1 M17.006 objectId:1563 +HGNC:7900 NPEPPS aminopeptidase puromycin sensitive protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "PSA|MP100" "puromycin-sensitive aminopeptidase|metalloproteinase MP100" Aminopeptidases 104 1999-12-09 2016-10-05 9520 ENSG00000141279 OTTHUMG00000165471 uc002ilr.5 Y07701 NM_006310 "CCDS45721|CCDS82149" P55786 "9048733|10329370" MGI:1101358 RGD:619962 NPEPPS 606793 M01.010 objectId:1575 3.4.11.2 +HGNC:7901 NPFF neuropeptide FF-amide peptide precursor protein-coding gene gene with protein product Approved 12q13.13 12q13.13 FMRFAL Endogenous ligands 542 1999-09-07 2015-08-25 8620 ENSG00000139574 OTTHUMG00000169856 uc001sdw.1 AF005271 NM_003717 CCDS8862 O15130 9224703 MGI:1891708 RGD:62033 NPFF 604643 +HGNC:17425 NPFFR1 neuropeptide FF receptor 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "OT7T022|NPFF1R1" neuropeptide FF 1 GPR147 G protein-coupled receptor 147 Neuropeptide receptors 854 2004-05-27 2006-02-15 2006-02-15 2016-10-05 64106 ENSG00000148734 OTTHUMG00000018404 uc021psj.2 AB040104 NM_022146 CCDS53539 Q9GZQ6 11024015 MGI:2685082 RGD:621570 NPFFR1 607448 objectId:300 +HGNC:4525 NPFFR2 neuropeptide FF receptor 2 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "NPFF2|NPGPR" neuropeptide FF 2 GPR74 G protein-coupled receptor 74 Neuropeptide receptors 854 1999-07-30 2006-02-15 2006-02-15 2016-10-05 10886 ENSG00000056291 OTTHUMG00000129918 uc003hgh.3 AF236083 NM_004885 "CCDS3551|CCDS3552|CCDS47072" Q9Y5X5 "10079187|10851242" MGI:1860130 RGD:620168 NPFFR2 607449 objectId:301 +HGNC:7905 NPHP1 nephrocystin 1 protein-coding gene gene with protein product Approved 2q13 02q13 "JBTS4|SLSN1" NPH1 nephronophthisis 1 (juvenile) 1991-08-08 2016-05-16 2016-05-16 4867 ENSG00000144061 OTTHUMG00000131195 uc002tfl.6 AF023674 NM_000272 "CCDS2086|CCDS46384|CCDS46385|CCDS46386" O15259 MGI:1858233 RGD:1308136 NPHP1 607100 123874 +HGNC:7907 NPHP3 nephrocystin 3 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "NPH3|KIAA2000|FLJ30691|FLJ36696|MKS7|SLSN3|CFAP31" "Meckel syndrome, type 7|cilia and flagella associated protein 31" nephronophthisis 3 (adolescent) Tetratricopeptide repeat domain containing 769 2000-01-20 2016-05-16 2016-10-05 27031 ENSG00000113971 OTTHUMG00000159713 uc003epe.3 AB056657 NM_153240 CCDS3078 Q7Z494 "12872122|15381417" MGI:1921275 RGD:1563856 NPHP3 608002 123878 +HGNC:48351 NPHP3-ACAD11 NPHP3-ACAD11 readthrough (NMD candidate) other readthrough Approved 3q22.1 03q22.1 2013-09-30 2015-01-08 100532724 ENSG00000274810 OTTHUMG00000187276 NR_037804 +HGNC:24129 NPHP3-AS1 NPHP3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q22.1 03q22.1 NCRNA00119 "non-protein coding RNA 119|NPHP3 antisense RNA 1 (non-protein coding)" 2008-09-12 2011-08-11 2012-08-15 2014-11-19 348808 ENSG00000248724 OTTHUMG00000159854 uc003epg.2 BC048124 NR_002811 12477932 +HGNC:19104 NPHP4 nephrocystin 4 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "SLSN4|KIAA0673|POC10" "nephroretinin|POC10 centriolar protein homolog (Chlamydomonas)" nephronophthisis 4 2002-10-03 2016-05-16 2016-10-05 261734 ENSG00000131697 OTTHUMG00000000701 uc001alq.3 AB014573 XM_017000996 CCDS44052 O75161 "11920287|12205563" MGI:2384210 RGD:1560172 NPHP4 607215 123884 +HGNC:7908 NPHS1 NPHS1, nephrin protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "CNF|NPHN" nephrosis 1, congenital, Finnish type (nephrin) "Fibronectin type III domain containing|V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "555|590|592|594" 1994-12-14 2016-07-07 2016-10-12 4868 ENSG00000161270 OTTHUMG00000180689 uc002oby.4 NM_004646 CCDS32996 O60500 "9915943|9660941" MGI:1859637 RGD:620460 LRG_693|http://www.lrg-sequence.org/LRG/LRG_693 NPHS1 602716 123889 +HGNC:13394 NPHS2 NPHS2, podocin protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "SRN1|PDCN" nephrosis 2, idiopathic, steroid-resistant (podocin) 2000-11-21 2016-07-07 2016-10-12 7827 ENSG00000116218 OTTHUMG00000035252 uc001gmq.5 AJ279254 XM_005245483 "CCDS1331|CCDS72988" Q9NP85 "8589695|10742096" MGI:2157018 RGD:620461 LRG_887|http://www.lrg-sequence.org/LRG/LRG_887 NPHS2 604766 123893 +HGNC:7909 NPIPA1 nuclear pore complex interacting protein family member A1 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 morpheus NPIP "nuclear pore complex interacting protein|nuclear pore complex interacting protein family, member A1" 1999-03-09 2013-06-11 2015-11-18 2015-11-18 9284 ENSG00000183426 OTTHUMG00000090663 AC002045 NM_006985 CCDS10557 Q9UND3 "11586358|18055785" 606406 +HGNC:41979 NPIPA2 nuclear pore complex interacting protein family member A2 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 nuclear pore complex interacting protein family, member A2 2013-06-11 2015-11-18 2015-11-18 642799 ENSG00000254852 OTTHUMG00000166264 XM_005255489 CCDS59263 E9PIF3 +HGNC:41978 NPIPA3 nuclear pore complex interacting protein family member A3 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 nuclear pore complex interacting protein family, member A3 2013-06-11 2015-11-18 2015-11-18 642778 ENSG00000224712 OTTHUMG00000166262 XM_017023553 CCDS59262 F8WFD2 +HGNC:41980 NPIPA5 nuclear pore complex interacting protein family member A5 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 nuclear pore complex interacting protein family, member A5 2013-06-11 2015-11-18 2015-11-18 100288332 ENSG00000183793 OTTHUMG00000166305 XM_011522329 CCDS59264 E9PKD4 +HGNC:41982 NPIPA7 nuclear pore complex interacting protein family member A7 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 nuclear pore complex interacting protein family, member A7 2013-06-11 2015-11-18 2015-11-18 101059938 ENSG00000214967 OTTHUMG00000166307 XM_005255735 CCDS61864 E9PJI5 +HGNC:41983 NPIPA8 nuclear pore complex interacting protein family member A8 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 LCR16a9 morpheus gene family member 9 nuclear pore complex interacting protein family, member A8 2013-06-11 2015-11-18 2015-11-18 101059953 ENSG00000214940 OTTHUMG00000166284 XM_005255738 CCDS61865 P0DM63 11586358 +HGNC:37452 NPIPB1P nuclear pore complex interacting protein family member B1, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 nuclear pore complex interacting protein family, member B1, pseudogene 2013-06-11 2015-11-18 2015-11-18 729602 ENSG00000257513 OTTHUMG00000170512 NG_023368 PGOHUM00000259246 +HGNC:37451 NPIPB2 nuclear pore complex interacting protein family, member B2 other unknown Approved 16p13.13 16p13.13 2016-09-26 2016-09-26 729978 ENSG00000234719 OTTHUMG00000166261 NG_012736 +HGNC:28989 NPIPB3 nuclear pore complex interacting protein family member B3 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 KIAA0220 NPIPL3 "nuclear pore complex interacting protein-like 3|nuclear pore complex interacting protein family, member B3" 2009-03-26 2013-06-11 2015-11-18 2015-11-18 23117 ENSG00000169246 OTTHUMG00000163506 NM_130464 Q92617 11948212 +HGNC:41985 NPIPB4 nuclear pore complex interacting protein family member B4 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 nuclear pore complex interacting protein family, member B4 2013-06-11 2015-11-18 2015-11-18 440345 ENSG00000185864 OTTHUMG00000163555 XM_017023244 C9JG80 +HGNC:37233 NPIPB5 nuclear pore complex interacting protein family member B5 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 nuclear pore complex interacting protein family, member B5 2013-06-11 2015-11-18 2015-11-18 100132247 ENSG00000243716 OTTHUMG00000163573 NM_001135865 CCDS45443 A8MRT5 +HGNC:37454 NPIPB6 nuclear pore complex interacting protein family member B6 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 nuclear pore complex interacting protein family, member B6 2013-06-11 2015-11-18 2016-10-05 728741 ENSG00000198156 OTTHUMG00000166319 XM_001717652 CCDS61892 E9PJ23 +HGNC:33832 NPIPB7 nuclear pore complex interacting protein family member B7 other unknown Approved 16p12.1 16p12.1 LOC440350 NPIPL1 "nuclear pore complex interacting protein-like 1|nuclear pore complex interacting protein family, member B7" 2009-02-10 2013-06-11 2015-11-18 2016-10-05 440350 ENSG00000233232 OTTHUMG00000156915 "BC156858|AC002425" NG_023370 O75200 +HGNC:37490 NPIPB8 nuclear pore complex interacting protein family member B8 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 nuclear pore complex interacting protein family, member B8 2013-06-11 2015-11-18 2015-11-18 728734 ENSG00000255524 OTTHUMG00000166386 XM_001132754 CCDS81963 E9PQR5 +HGNC:41987 NPIPB9 nuclear pore complex interacting protein family member B9 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 nuclear pore complex interacting protein family, member B9 2013-06-11 2015-11-18 2015-11-18 100507607 ENSG00000196993 OTTHUMG00000170452 XM_017022814 CCDS73858 F8W1W9 +HGNC:37455 NPIPB10P nuclear pore complex interacting protein family, member B10, pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 2016-09-26 2016-09-26 730153 ENSG00000196796 OTTHUMG00000170453 NG_023380 PGOHUM00000305919 +HGNC:37453 NPIPB11 nuclear pore complex interacting protein family member B11 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 nuclear pore complex interacting protein family, member B11 2013-06-11 2015-11-18 2015-11-18 728888 ENSG00000254206 OTTHUMG00000170467 XM_002343430 E5RHQ5 +HGNC:37491 NPIPB12 nuclear pore complex interacting protein family, member B12 other unknown Approved 16p11.2 16p11.2 2016-09-26 2016-09-26 440353 ENSG00000169203 OTTHUMG00000163547 NG_029360 +HGNC:41989 NPIPB13 nuclear pore complex interacting protein family, member B13 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2016-09-26 2016-09-26 613037 ENSG00000198064 OTTHUMG00000163556 NM_001321892 CCDS81968 +HGNC:41990 NPIPB14P nuclear pore complex interacting protein family, member B14, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 2016-09-26 2016-09-26 ENSG00000226232 OTTHUMG00000167594 PGOHUM00000293639 +HGNC:34409 NPIPB15 nuclear pore complex interacting protein family member B15 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 LOC440348 NPIPL2 "nuclear pore complex interacting protein-like 2|nuclear pore complex interacting protein family, member B15" 2009-02-10 2013-06-11 2015-11-18 2016-10-05 440348 ENSG00000196436 OTTHUMG00000156916 BC160029 NM_001018059 CCDS76897 A6NHN6 +HGNC:35407 NPIPP1 nuclear pore complex interacting protein pseudogene 1 pseudogene pseudogene Approved 16p13.11 16p13.11 2009-07-07 2015-03-19 100874381 ENSG00000188599 OTTHUMG00000184230 NG_032198 NPIPP1 PGOHUM00000293434 +HGNC:16781 NPL N-acetylneuraminate pyruvate lyase protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "NPL1|DHDPS1" dihydrodipicolinate synthetase homolog 1 (E. coli) C1orf13 "chromosome 1 open reading frame 13|N-acetylneuraminate pyruvate lyase (dihydrodipicolinate synthase)" 2001-10-05 2003-09-17 2016-06-03 2016-10-05 80896 ENSG00000135838 OTTHUMG00000035321 uc057nuk.1 AF338436 NM_030769 "CCDS1350|CCDS55666|CCDS55667|CCDS72990" Q9BXD5 11318611 MGI:1921341 RGD:1549702 NPL 611412 4.1.3.3 +HGNC:18261 NPLOC4 NPL4 homolog, ubiquitin recognition factor protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "NPL4|FLJ20657|KIAA1499" "nuclear protein localization 4 homolog (S. cerevisiae)|NPLOC4 ubiquitin recognition factor" Zinc fingers 26 2006-01-25 2015-07-02 2016-04-28 55666 ENSG00000182446 OTTHUMG00000177990 uc002kat.5 AB040932 NM_017921 CCDS45812 Q8TAT6 "11574150|10811609|24429874" MGI:2679787 RGD:620794 NPLOC4 606590 +HGNC:7910 NPM1 nucleophosmin protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "B23|NPM" "nucleolar phosphoprotein B23|numatrin|nucleophosmin/nucleoplasmin family, member 1" nucleophosmin (nucleolar phosphoprotein B23, numatrin) 1993-08-24 2016-06-27 2016-10-12 4869 ENSG00000181163 OTTHUMG00000130465 uc032vtc.2 M26697 NM_002520 "CCDS4376|CCDS4377|CCDS43399" P06748 "8471164|8122112" MGI:106184 RGD:3192 LRG_458|http://www.lrg-sequence.org/LRG/LRG_458 NPM1 164040 159793 +HGNC:7911 NPM1P1 nucleophosmin 1 pseudogene 1 pseudogene pseudogene Approved 18q12.3 18q12.3 NG1-1.6 NPMP1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 1 1993-08-24 2016-06-27 2016-06-27 4870 L15315 NG_001162 8471164 PGOHUM00000234923 +HGNC:7922 NPM1P2 nucleophosmin 1 pseudogene 2 pseudogene pseudogene Approved 18q11.2 18q11.2 NG2-6 NPMP2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 2 1993-08-24 2016-06-27 2016-06-27 4871 ENSG00000266227 OTTHUMG00000179428 X54171 NG_009868 "8471164|2157848" PGOHUM00000235031 +HGNC:7923 NPM1P3 nucleophosmin 1 pseudogene 3 pseudogene pseudogene Approved 16p13.3 16p13.3 NG3-3 "NPMP3|NPM1P15" "nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 15|nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 3" 1993-08-24 2016-06-27 2016-06-27 4872 L15316 NG_001163 8471164 PGOHUM00000248978 +HGNC:7924 NPM1P4 nucleophosmin 1 pseudogene 4 pseudogene pseudogene Approved 13q12.2 13q12.2 NG4-5 NPMP4 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 4 1993-08-24 2016-06-27 2016-06-27 100128903 ENSG00000226703 OTTHUMG00000016636 L15317 NG_011457 8471164 PGOHUM00000248344 +HGNC:7925 NPM1P5 nucleophosmin 1 pseudogene 5 pseudogene pseudogene Approved 15q26.1 15q26.1 NG5-4 NPMP5 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 5 1993-08-24 2016-06-27 2016-06-27 4874 ENSG00000258925 OTTHUMG00000171702 L15318 NG_001165 8471164 PGOHUM00000247275 +HGNC:7926 NPM1P6 nucleophosmin 1 pseudogene 6 pseudogene pseudogene Approved 8q12.2 08q12.2 NG6-4 NPMP6 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 6 1993-08-24 2016-06-27 2016-06-27 4875 ENSG00000213881 OTTHUMG00000164349 L15319 NG_001166 8471164 PGOHUM00000249688 +HGNC:7927 NPM1P7 nucleophosmin 1 pseudogene 7 pseudogene pseudogene Approved 12p13.31 12p13.31 NG7-6 "NPMP7|NPM1P16" "nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 16|nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 7" 1993-08-24 2016-06-27 2016-06-27 10831 "L15320|AC007068" NG_001167 8471164 +HGNC:7928 NPM1P8 nucleophosmin 1 pseudogene 8 pseudogene pseudogene Approved Xp21.1 Xp21.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 8 1999-05-28 2016-06-27 2016-06-27 100130233 ENSG00000236285 OTTHUMG00000021333 NG_012232 PGOHUM00000241691 +HGNC:7929 NPM1P9 nucleophosmin 1 pseudogene 9 pseudogene pseudogene Approved Xp22.2 Xp22.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 9 1999-05-28 2016-06-27 2016-06-27 392428 ENSG00000231066 OTTHUMG00000021167 AF164687 NG_005106 PGOHUM00000241194 +HGNC:7912 NPM1P10 nucleophosmin 1 pseudogene 10 pseudogene pseudogene Approved 6q16.3 06q16.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 10 1999-07-22 2016-06-27 2016-06-27 10837 ENSG00000214428 OTTHUMG00000015284 AL021330 NG_009882 PGOHUM00000243311 +HGNC:7913 NPM1P11 nucleophosmin 1 pseudogene 11 pseudogene pseudogene Approved 7p21.3 07p21.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 11 1999-07-22 2016-06-27 2016-06-27 10836 ENSG00000226827 OTTHUMG00000152312 AC004538 NG_022930 PGOHUM00000232592 +HGNC:7914 NPM1P12 nucleophosmin 1 pseudogene 12 pseudogene pseudogene Approved 7q36.1 07q36.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 12 1999-07-22 2016-06-27 2016-06-27 10835 ENSG00000215311 OTTHUMG00000151505 AC004941 NG_000887 PGOHUM00000233644 +HGNC:7915 NPM1P13 nucleophosmin 1 pseudogene 13 pseudogene pseudogene Approved 7p21.1 07p21.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 13 1999-07-22 2016-06-27 2016-06-27 10834 ENSG00000232492 OTTHUMG00000152542 AC004994 NG_000886 PGOHUM00000232605 +HGNC:7916 NPM1P14 nucleophosmin 1 pseudogene 14 pseudogene pseudogene Approved 7q31.1 07q31.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 14 1999-07-22 2016-06-27 2016-06-27 10833 ENSG00000182965 OTTHUMG00000155193 AC005192 NG_000885 PGOHUM00000233532 +HGNC:7919 NPM1P17 nucleophosmin 1 pseudogene 17 pseudogene pseudogene Approved 3q22.3 03q22.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17 1999-07-22 2016-06-27 2016-06-27 10830 ENSG00000242070 OTTHUMG00000159756 AF164688 NG_001233 PGOHUM00000238208 +HGNC:7920 NPM1P18 nucleophosmin 1 pseudogene 18 pseudogene pseudogene Approved 7p14.2 07p14.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 18 1999-07-22 2016-06-27 2016-06-27 10829 ENSG00000225739 OTTHUMG00000154947 AF164689 NG_001232 PGOHUM00000233185 +HGNC:7921 NPM1P19 nucleophosmin 1 pseudogene 19 pseudogene pseudogene Approved 20q11.23 20q11.23 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 19 1999-07-22 2016-06-27 2016-10-05 10828 ENSG00000223864 OTTHUMG00000032459 AF164690 NG_001231 PGOHUM00000247531 +HGNC:20140 NPM1P20 nucleophosmin 1 pseudogene 20 pseudogene pseudogene Approved 14q32.31 14q32.31 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 20 2003-01-13 2016-06-27 2016-06-27 326608 NG_002597 PGOHUM00000247894 +HGNC:13855 NPM1P21 nucleophosmin 1 pseudogene 21 pseudogene pseudogene Approved 8q12.1 08q12.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 21 2005-10-06 2016-06-27 2016-06-27 100129237 ENSG00000248578 OTTHUMG00000160268 NG_011601 PGOHUM00000249348 +HGNC:39679 NPM1P22 nucleophosmin 1 pseudogene 22 pseudogene pseudogene Approved 13q21.32 13q21.32 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 22 2011-03-22 2016-06-27 2016-06-27 390411 ENSG00000227969 OTTHUMG00000017044 NG_011393 PGOHUM00000248424 +HGNC:44513 NPM1P23 nucleophosmin 1 pseudogene 23 pseudogene pseudogene Approved 3p24.2 03p24.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 23 2012-11-13 2016-06-27 2016-06-27 100422256 ENSG00000242109 OTTHUMG00000155663 NG_025558 PGOHUM00000237558 +HGNC:45097 NPM1P24 nucleophosmin 1 pseudogene 24 pseudogene pseudogene Approved 10q22.1 10q22.1 "nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene|nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 24" 2013-02-15 2016-06-27 2016-06-27 100422312 ENSG00000215086 OTTHUMG00000018445 NG_025446 PGOHUM00000238528 +HGNC:45204 NPM1P25 nucleophosmin 1 pseudogene 25 pseudogene pseudogene Approved 10q24.1 10q24.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 25 2013-03-07 2016-06-27 2016-06-27 399804 ENSG00000229417 OTTHUMG00000018826 NG_022156 PGOHUM00000238599 +HGNC:45205 NPM1P26 nucleophosmin 1 pseudogene 26 pseudogene pseudogene Approved 10q24.1 10q24.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 26 2013-03-07 2016-06-27 2016-06-27 100422313 ENSG00000235677 OTTHUMG00000018835 NG_025538 PGOHUM00000238901 +HGNC:45206 NPM1P27 nucleophosmin 1 pseudogene 27 pseudogene pseudogene Approved 5q15 05q15 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 27 2013-03-07 2016-06-27 2016-06-27 100422243 ENSG00000249353 OTTHUMG00000162646 NG_024611 PGOHUM00000235312 +HGNC:45207 NPM1P28 nucleophosmin 1 pseudogene 28 pseudogene pseudogene Approved 3q24 03q24 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 28 2013-03-07 2016-06-27 2016-06-27 646849 ENSG00000240804 OTTHUMG00000159461 NG_022222 PGOHUM00000237806 +HGNC:45208 NPM1P29 nucleophosmin 1 pseudogene 29 pseudogene pseudogene Approved 3q25.1 03q25.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 29 2013-03-07 2016-06-27 2016-06-27 100422259 ENSG00000239351 OTTHUMG00000159734 NG_025640 PGOHUM00000237818 +HGNC:45209 NPM1P30 nucleophosmin 1 pseudogene 30 pseudogene pseudogene Approved 10p12.31 10p12.31 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 30 2013-03-07 2016-06-27 2016-06-27 101928904 ENSG00000228219 OTTHUMG00000017787 NG_046378 PGOHUM00000238690 +HGNC:45210 NPM1P31 nucleophosmin 1 pseudogene 31 pseudogene pseudogene Approved 10q26.13 10q26.13 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 31 2013-03-07 2016-06-27 2016-06-27 100287472 ENSG00000214807 OTTHUMG00000019219 NG_022193 PGOHUM00000238963 +HGNC:45211 NPM1P32 nucleophosmin 1 pseudogene 32 pseudogene pseudogene Approved 2q14.3 02q14.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 32 2013-03-07 2016-06-27 2016-06-27 440902 ENSG00000213239 OTTHUMG00000153347 NG_021520 PGOHUM00000240277 +HGNC:45212 NPM1P33 nucleophosmin 1 pseudogene 33 pseudogene pseudogene Approved 2q33.2 02q33.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 33 2013-03-07 2016-06-27 2016-06-27 100131478 ENSG00000213925 OTTHUMG00000154626 NG_021548 PGOHUM00000240496 +HGNC:45213 NPM1P34 nucleophosmin 1 pseudogene 34 pseudogene pseudogene Approved Xq25 Xq25 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 34 2013-03-07 2016-06-27 2016-06-27 100128410 ENSG00000232054 OTTHUMG00000022342 NG_022699 PGOHUM00000241994 +HGNC:45214 NPM1P35 nucleophosmin 1 pseudogene 35 pseudogene pseudogene Approved 11q12.3 11q12.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 35 2013-03-07 2016-06-27 2016-06-27 100129067 ENSG00000255213 OTTHUMG00000167511 NG_021821 PGOHUM00000242757 +HGNC:45215 NPM1P36 nucleophosmin 1 pseudogene 36 pseudogene pseudogene Approved 6p12.1 06p12.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 36 2013-03-07 2016-06-27 2016-06-27 652423 ENSG00000214604 OTTHUMG00000014904 NG_022300 PGOHUM00000243210 +HGNC:45216 NPM1P37 nucleophosmin 1 pseudogene 37 pseudogene pseudogene Approved 6q13 06q13 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 37 2013-03-07 2016-06-27 2016-06-27 100422261 ENSG00000219085 OTTHUMG00000014983 NG_025830 PGOHUM00000243239 +HGNC:45217 NPM1P38 nucleophosmin 1 pseudogene 38 pseudogene pseudogene Approved 6q16.3 06q16.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 38 2013-03-07 2016-06-27 2016-10-05 100128985 ENSG00000219257 OTTHUMG00000015272 NG_022318 PGOHUM00000243306 +HGNC:45218 NPM1P39 nucleophosmin 1 pseudogene 39 pseudogene pseudogene Approved 1p36.11 01p36.11 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 39 2013-03-07 2016-06-27 2016-06-27 440577 ENSG00000225159 OTTHUMG00000004280 NG_022773 PGOHUM00000244647 +HGNC:45219 NPM1P40 nucleophosmin 1 pseudogene 40 pseudogene pseudogene Approved 1q32.1 01q32.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 40 2013-03-07 2016-06-27 2016-06-27 100289584 ENSG00000236523 OTTHUMG00000042124 NG_022825 PGOHUM00000245167 +HGNC:45220 NPM1P41 nucleophosmin 1 pseudogene 41 pseudogene pseudogene Approved 4q21.22 04q21.22 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 41 2013-03-07 2016-06-27 2016-06-27 100422249 ENSG00000248543 OTTHUMG00000160939 NG_025136 PGOHUM00000245611 +HGNC:45221 NPM1P42 nucleophosmin 1 pseudogene 42 pseudogene pseudogene Approved 15q24.1 15q24.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 42 2013-03-07 2016-06-27 2016-06-27 729686 ENSG00000259259 OTTHUMG00000172550 NG_022113 PGOHUM00000246845 +HGNC:45222 NPM1P43 nucleophosmin 1 pseudogene 43 pseudogene pseudogene Approved 15q24.1 15q24.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 43 2013-03-07 2016-06-27 2016-06-27 100422309 ENSG00000259440 OTTHUMG00000172552 NG_025336 PGOHUM00000246847 +HGNC:45223 NPM1P44 nucleophosmin 1 pseudogene 44 pseudogene pseudogene Approved 8q13.2 08q13.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 44 2013-03-07 2016-06-27 2016-06-27 100422270 NG_026109 PGOHUM00000249696 +HGNC:45224 NPM1P45 nucleophosmin 1 pseudogene 45 pseudogene pseudogene Approved 17p13.1 17p13.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 45 2013-03-07 2016-06-27 2016-06-27 100422316 ENSG00000265593 OTTHUMG00000178430 NG_026145 PGOHUM00000236919 +HGNC:45225 NPM1P46 nucleophosmin 1 pseudogene 46 pseudogene pseudogene Approved 2q33.1 02q33.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 46 2013-03-07 2016-06-27 2016-06-27 729342 ENSG00000213104 OTTHUMG00000154445 NG_021545 PGOHUM00000240473 +HGNC:45226 NPM1P47 nucleophosmin 1 pseudogene 47 pseudogene pseudogene Approved 15q22.2 15q22.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 47 2013-03-07 2016-06-27 2016-06-27 100129972 ENSG00000259466 OTTHUMG00000171958 NG_022111 PGOHUM00000246811 +HGNC:45227 NPM1P48 nucleophosmin 1 pseudogene 48 pseudogene pseudogene Approved 2p25.2 02p25.2 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 48 2013-03-07 2016-06-27 2016-06-27 442006 ENSG00000231821 OTTHUMG00000151582 NG_021491 PGOHUM00000239968 +HGNC:45228 NPM1P49 nucleophosmin 1 pseudogene 49 pseudogene pseudogene Approved Xp11.3 Xp11.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 49 2013-03-07 2016-06-27 2016-10-05 100422284 ENSG00000226556 OTTHUMG00000021442 NG_026690 PGOHUM00000241272 +HGNC:45229 NPM1P50 nucleophosmin 1 pseudogene 50 pseudogene pseudogene Approved 11q13.4 11q13.4 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 50 2013-03-07 2016-06-27 2016-06-27 100129795 ENSG00000213333 OTTHUMG00000165369 NG_030170 PGOHUM00000242370 +HGNC:45230 NPM1P51 nucleophosmin 1 pseudogene 51 pseudogene pseudogene Approved 6p21.1 06p21.1 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 51 2013-03-07 2016-06-27 2016-06-27 100130606 ENSG00000230913 OTTHUMG00000014682 NG_022355 PGOHUM00000243622 +HGNC:45231 NPM1P52 nucleophosmin 1 pseudogene 52 pseudogene pseudogene Approved 8q22.3 08q22.3 nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 52 2013-03-07 2016-06-27 2016-06-27 100422272 ENSG00000253663 OTTHUMG00000164762 NG_026123 PGOHUM00000249762 +HGNC:7930 NPM2 nucleophosmin/nucleoplasmin 2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 1999-05-28 2009-08-27 2014-11-19 10361 ENSG00000158806 OTTHUMG00000131129 uc003xad.5 AY262113 NM_182795 "CCDS6018|CCDS75703" Q86SE8 12714744 MGI:1890811 RGD:727816 NPM2 608073 +HGNC:7931 NPM3 nucleophosmin/nucleoplasmin 3 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 1999-05-28 2009-08-27 2016-10-05 10360 ENSG00000107833 OTTHUMG00000018942 uc001ktt.3 AY049737 NM_006993 CCDS7519 O75607 11722795 MGI:894653 RGD:1565542 NPM3 606456 +HGNC:27405 NPNT nephronectin protein-coding gene gene with protein product Approved 4q24 04q24 "EGFL6L|POEM" 2005-10-07 2015-02-24 255743 ENSG00000168743 OTTHUMG00000161189 uc003hya.4 NM_198278 "CCDS34046|CCDS54784|CCDS54785|CCDS54786|CCDS54787" Q6UXI9 15754038 MGI:2148811 RGD:1593709 NPNT 610306 +HGNC:7939 NPPA natriuretic peptide A protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "ANP|PND" natriuretic peptide precursor A Endogenous ligands 542 1986-01-01 2010-11-09 2016-10-12 4878 ENSG00000175206 OTTHUMG00000002388 uc001ati.4 BC005893 NM_006172 CCDS139 P01160 MGI:97367 RGD:3193 LRG_751|http://www.lrg-sequence.org/LRG/LRG_751 NPPA 108780 205584 +HGNC:37635 NPPA-AS1 NPPA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.21 01p36.21 "NPPAAS|NPPA-AS" "NPPA antisense RNA (non-protein coding)|NPPA antisense RNA 1 (non-protein coding)" 2009-11-27 2010-11-25 2012-08-15 2012-10-12 100379251 ENSG00000242349 OTTHUMG00000002377 uc057cib.1 NR_037806 19671135 +HGNC:7940 NPPB natriuretic peptide B protein-coding gene gene with protein product Approved 1p36.22 01p36.22 natriuretic peptide precursor B Endogenous ligands 542 1993-11-30 2010-11-09 2016-10-05 4879 ENSG00000120937 OTTHUMG00000002389 uc001atj.4 BC025785 NM_002521 CCDS140 P16860 2597152 MGI:97368 RGD:3194 NPPB 600295 +HGNC:7941 NPPC natriuretic peptide C protein-coding gene gene with protein product Approved 2q37.1 02q37.1 CNP natriuretic peptide precursor C Endogenous ligands 542 1993-11-30 2010-11-09 2014-11-19 4880 ENSG00000163273 OTTHUMG00000133232 uc002vsl.3 NM_024409 CCDS2489 P23582 "7698765|8330189" MGI:97369 RGD:620850 NPPC 600296 +HGNC:7943 NPR1 natriuretic peptide receptor 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "GUCY2A|ANPa" guanylate cyclase A "ANPRA|NPRA" "atrionatriuretic peptide receptor A|natriuretic peptide receptor A" Guanylate cyclase receptors 343 1990-03-27 2014-03-03 2016-10-05 4881 ENSG00000169418 OTTHUMG00000037085 uc001fcs.5 BC063304 NM_000906 CCDS1051 P16066 1979052 MGI:97371 RGD:3195 NPR1 108960 objectId:1747 +HGNC:7944 NPR2 natriuretic peptide receptor 2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "GUCY2B|ANPb" guanylate cyclase 2B "ANPRB|NPRB|AMDM" "acromesomelic dysplasia, Maroteaux type|atrionatriuretic peptide receptor B|natriuretic peptide receptor B" "Guanylate cyclase receptors|DENN/MADD domain containing" "343|504" 1990-03-27 2014-03-03 2016-06-21 4882 ENSG00000159899 OTTHUMG00000019871 uc003zyd.4 AJ005282 XM_011517890 CCDS6590 P20594 "9634515|15146390" MGI:97372 RGD:620851 NPR2 108961 123897 objectId:1748 +HGNC:7945 NPR3 natriuretic peptide receptor 3 protein-coding gene gene with protein product Approved 5p13.3 05p13.3 "GUCY2B|FLJ14054" guanylate cyclase C "NPRC|ANPRC|C5orf23" "chromosome 5 open reading frame 23|atrionatriuretic peptide receptor C|natriuretic peptide receptor C/guanylate cyclase C (atrionatriuretic peptide receptor C)|natriuretic peptide receptor C" DENN/MADD domain containing 504 1990-03-27 2014-03-03 2014-11-19 4883 ENSG00000113389 OTTHUMG00000150316 uc003jhu.4 NM_000908 "CCDS47196|CCDS56356|CCDS56357" P17342 "2162522|1979052" MGI:97373 RGD:3196 NPR3 108962 objectId:1749 +HGNC:24969 NPRL2 NPR2-like, GATOR1 complex subunit protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "NPR2L|NPR2" TUSC4 "tumor suppressor candidate 4|nitrogen permease regulator-like 2 (S. cerevisiae)" 2004-01-20 2010-03-30 2015-07-03 2016-10-05 10641 ENSG00000114388 OTTHUMG00000156864 uc003daj.2 AF040708 NM_006545 CCDS2826 Q8WTW4 "15374952|18616680|23723238" MGI:1914482 RGD:1308927 NPRL2 607072 +HGNC:14124 NPRL3 NPR3 like, GATOR1 complex subunit protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "CGTHBA|RMD11|NPR3|MARE|HS-40" conserved gene telomeric to alpha globin cluster C16orf35 "chromosome 16 open reading frame 35|nitrogen permease regulator-like 3 (S. cerevisiae)|NPR3-like, GATOR1 complex subunit" 2000-12-21 2010-03-30 2016-03-31 2016-03-31 8131 ENSG00000103148 OTTHUMG00000047792 uc059ogj.1 NM_001039476 "CCDS73794|CCDS73795" Q12980 8575760 MGI:109258 RGD:1308665 NPRL3 600928 +HGNC:33940 NPS neuropeptide S protein-coding gene gene with protein product Approved 10q26.2 10q26.2 prepro-neuropeptide S Endogenous ligands 542 2008-01-17 2015-08-25 594857 ENSG00000214285 OTTHUMG00000188145 uc001ljx.2 BC148465 NM_001030013 CCDS41577 P0C0P6 "18181564|15312648" MGI:3642232 RGD:2324597 NPS 609513 +HGNC:23631 NPSR1 neuropeptide S receptor 1 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "PGR14|GPRA" GPR154 G protein-coupled receptor 154 Neuropeptide receptors 854 2003-11-26 2006-05-10 2006-05-10 2014-11-19 387129 ENSG00000187258 OTTHUMG00000099383 uc003teg.1 AY255536 NM_207173 "CCDS5443|CCDS5444|CCDS75579|CCDS75580|CCDS75581" Q6W5P4 "12679517|15073379" MGI:2441738 RGD:1564154 NPSR1 608595 objectId:302 +HGNC:22128 NPSR1-AS1 NPSR1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p14.3 07p14.3 "AAA1|IMAGE:4827585" asthma-associated alternatively spliced gene 1 NPSR1 antisense RNA 1 (non-protein coding) 2012-03-23 2012-08-15 2012-10-12 404744 ENSG00000197085 OTTHUMG00000153007 uc010kwo.3 BC031961 NR_015356 15073379 608596 +HGNC:17867 NPTN neuroplastin protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "SDR1|GP55|GP65|np65|np55" SDFR1 stromal cell derived factor receptor 1 "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2002-11-21 2006-02-22 2006-02-22 2014-11-18 27020 ENSG00000156642 OTTHUMG00000137586 uc002avs.4 AF035287 NM_012428 "CCDS10249|CCDS10250|CCDS58379|CCDS58380" Q9Y639 "8619474|9110174" MGI:108077 RGD:620296 NPTN 612820 +HGNC:45091 NPTN-IT1 NPTN intronic transcript 1 non-coding RNA RNA, long non-coding Approved 15q24.1 15q24.1 lncRNA-LET long non-coding RNA, low expression in tumor NPTN intronic transcript 1 (non-protein coding) 2013-02-11 2015-02-25 2015-02-25 101241892 ENSG00000281183 OTTHUMG00000189514 uc032cjb.2 AK055007 NR_103844 23395002 615176 +HGNC:7952 NPTX1 neuronal pentraxin 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 neuronal pentraxin I Long pentraxins 1142 1995-05-12 2016-03-14 2016-03-14 4884 ENSG00000171246 OTTHUMG00000177607 uc002jyp.2 U61849 NM_002522 CCDS32762 Q15818 8884281 MGI:107811 RGD:628894 NPTX1 602367 +HGNC:7953 NPTX2 neuronal pentraxin 2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 apexin neuronal pentraxin II Long pentraxins 1142 1995-05-12 2016-03-14 2016-10-05 4885 ENSG00000106236 OTTHUMG00000154369 uc003upl.3 NM_002523 CCDS5657 P47972 8530029 MGI:1858209 RGD:1309447 NPTX2 600750 +HGNC:7954 NPTXR neuronal pentraxin receptor protein-coding gene gene with protein product Approved 22q13.1 22q13.1 Long pentraxins 1142 1999-10-13 2014-11-18 23467 ENSG00000221890 OTTHUMG00000150458 uc062eix.1 AF052163 NM_014293 CCDS33647 O95502 16497176 MGI:1920590 RGD:628898 NPTXR 609474 +HGNC:13782 NPVF neuropeptide VF precursor protein-coding gene gene with protein product Approved 7p15.3 07p15.3 RFRP "RFamide-related peptide precursor|FMRFamide-related peptide precursor" C7orf9 chromosome 7 open reading frame 9 Endogenous ligands 542 2003-07-10 2006-10-06 2006-10-06 2015-01-28 64111 ENSG00000105954 OTTHUMG00000128509 uc003sxo.4 AB040290 NM_022150 CCDS5395 Q9HCQ7 "11951088|11173868" MGI:1926488 RGD:61815 NPVF 616984 +HGNC:30509 NPW neuropeptide W protein-coding gene gene with protein product Approved 16p13.3 16p13.3 PPL8 prepro-neuropeptide W Endogenous ligands 542 2005-09-02 2014-11-19 283869 ENSG00000183971 OTTHUMG00000176914 uc059pez.1 AB084276 NM_001099456 CCDS42102 Q8N729 "12118011|12401809" MGI:2685781 RGD:727858 NPW 607997 +HGNC:7955 NPY neuropeptide Y protein-coding gene gene with protein product Approved 7p15.3 07p15.3 PYY4 prepro-neuropeptide Y Endogenous ligands 542 2001-06-22 2014-11-19 4852 ENSG00000122585 OTTHUMG00000022973 uc003sww.3 K01911 NM_000905 CCDS5387 P01303 MGI:97374 RGD:3197 NPY 162640 +HGNC:7956 NPY1R neuropeptide Y receptor Y1 protein-coding gene gene with protein product Approved 4q32.2 04q32.2 NPYR Neuropeptide receptors 854 1992-06-22 2015-07-22 4886 ENSG00000164128 OTTHUMG00000161371 uc003iqm.3 XM_005263031 CCDS34089 P25929 8095935 MGI:104963 RGD:3198 NPY1R 162641 objectId:305 +HGNC:7957 NPY2R neuropeptide Y receptor Y2 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 Neuropeptide receptors 854 1996-10-18 2015-08-25 4887 ENSG00000185149 OTTHUMG00000161485 uc003ioq.3 U42766 NM_000910 CCDS3791 P49146 7559383 MGI:108418 RGD:620475 NPY2R 162642 objectId:306 +HGNC:9329 NPY4R neuropeptide Y receptor Y4 protein-coding gene gene with protein product Approved 10q11.2 10q11.2 "Y4|PP1" PPYR1 pancreatic polypeptide receptor 1 Neuropeptide receptors 854 1996-04-12 2013-03-26 2013-03-26 2015-09-01 5540 ENSG00000204174 OTTHUMG00000018108 uc031wfd.1 XM_011539936 CCDS73100 P50391 9417917 MGI:105374 RGD:61864 601790 objectId:307 +HGNC:7958 NPY5R neuropeptide Y receptor Y5 protein-coding gene gene with protein product Approved 4q32.2 04q32.2 NPYR5 Neuropeptide receptors 854 1997-03-27 2015-07-22 4889 ENSG00000164129 OTTHUMG00000161353 uc003iqn.3 BC042416 NM_006174 CCDS3804 Q15761 "8700207|9417917" MGI:108082 RGD:3199 NPY5R 602001 objectId:308 +HGNC:7959 NPY6R neuropeptide Y receptor Y6 (pseudogene) pseudogene pseudogene Approved 5q31.2 05q31.2 "PP2|NPY1RL|NPY6RP" Neuropeptide receptors 854 1997-03-27 2013-03-26 4888 ENSG00000226306 OTTHUMG00000163236 D86519 NR_002713 Q99463 "8910373|8910290" NPY6R 601770 PGOHUM00000235768 objectId:683 +HGNC:2874 NQO1 NAD(P)H quinone dehydrogenase 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "DHQU|QR1|DTD" "NMOR1|DIA4" "diaphorase (NADH/NADPH) (cytochrome b-5 reductase)|NAD(P)H dehydrogenase, quinone 1" 2001-06-22 2001-12-07 2016-03-21 2016-10-05 1728 ENSG00000181019 OTTHUMG00000137575 uc002exp.5 M81600 NM_001286137 "CCDS10883|CCDS32471|CCDS32472|CCDS67067" P15559 2843525 MGI:103187 RGD:2503 NQO1 125860 1.6.5.2 +HGNC:7856 NQO2 NAD(P)H quinone dehydrogenase 2 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "QR2|DHQV|DIA6" NMOR2 "NAD(P)H menadione oxidoreductase 2, dioxin-inducible|NAD(P)H dehydrogenase, quinone 2" 1991-09-13 2001-12-07 2016-03-21 2016-03-21 4835 ENSG00000124588 OTTHUMG00000014130 uc003mus.3 U07736 NM_001290221 "CCDS4481|CCDS75388" P16083 1691923 MGI:104513 RGD:1303320 NQO2 160998 1.6.5.2 +HGNC:7962 NR1D1 nuclear receptor subfamily 1 group D member 1 protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "ear-1|hRev|Rev-ErbAalpha|THRA1" THRAL nuclear receptor subfamily 1, group D, member 1 Nuclear hormone receptors 71 1999-04-16 2015-11-18 2016-10-05 9572 ENSG00000126368 OTTHUMG00000133327 uc002htz.4 X72631 NM_021724 CCDS11361 P20393 1971514 MGI:2444210 RGD:628827 NR1D1 602408 objectId:596 +HGNC:7963 NR1D2 nuclear receptor subfamily 1 group D member 2 protein-coding gene gene with protein product Approved 3p24.2 03p24.2 "BD73|RVR|EAR-1r|HZF2|Hs.37288" nuclear receptor subfamily 1, group D, member 2 Nuclear hormone receptors 71 1998-11-30 2015-11-18 2016-10-05 9975 ENSG00000174738 OTTHUMG00000155659 uc003ccs.2 BC045613 XM_006713451 CCDS33718 Q14995 "7997240|10198169" MGI:2449205 RGD:628828 NR1D2 602304 objectId:597 +HGNC:7964 NR1H1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:7965 NR1H2 nuclear receptor subfamily 1 group H member 2 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 "NER|NER-I|RIP15|LXR-b" liver X receptor-beta UNR "ubiquitously-expressed nuclear receptor|nuclear receptor subfamily 1, group H, member 2" Nuclear hormone receptors 71 1994-09-19 2015-11-18 2015-11-18 7376 ENSG00000131408 OTTHUMG00000183036 uc010enw.5 U14534 NM_007121 "CCDS42593|CCDS58673" P55055 "7782080|7971966" MGI:1352463 RGD:61906 NR1H2 600380 objectId:601 +HGNC:7966 NR1H3 nuclear receptor subfamily 1 group H member 3 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "LXR-a|RLD-1" liver X receptor-alpha nuclear receptor subfamily 1, group H, member 3 Nuclear hormone receptors 71 1999-09-17 2015-11-18 2015-11-18 10062 ENSG00000025434 OTTHUMG00000150628 uc058bcq.1 U22662 XM_005252707 "CCDS7929|CCDS44584|CCDS44585|CCDS73285" Q13133 "8621574|7744246" MGI:1352462 RGD:61909 NR1H3 602423 objectId:602 +HGNC:7967 NR1H4 nuclear receptor subfamily 1 group H member 4 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "FXR|RIP14|HRR1|HRR-1" farnesoid X receptor nuclear receptor subfamily 1, group H, member 4 Nuclear hormone receptors 71 1999-09-17 2015-11-18 2015-11-18 9971 ENSG00000012504 OTTHUMG00000170359 uc001thp.3 U68233 NM_005123 "CCDS9078|CCDS55873|CCDS55874|CCDS55875|CCDS55876" Q96RI1 "7774010|9223286" MGI:1352464 RGD:628831 NR1H4 603826 304804 objectId:603 +HGNC:32673 NR1H5P nuclear receptor subfamily 1 group H member 5, pseudogene pseudogene pseudogene Approved 1p13.2 01p13.2 "Fxrb|NR1H5" "nuclear receptor subfamily 1, group H, member 5 pseudogene|nuclear receptor subfamily 1, group H, member 5, pseudogene" Nuclear hormone receptors 71 2008-01-31 2015-11-18 2015-11-18 643609 ENSG00000227970 OTTHUMG00000012058 NG_007471.1 MGI:3026618 objectId:604 +HGNC:7968 NR1I2 nuclear receptor subfamily 1 group I member 2 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "ONR1|PXR|BXR|SXR|PAR2" "pregnane X receptor|orphan nuclear receptor PXR" nuclear receptor subfamily 1, group I, member 2 Nuclear hormone receptors 71 1999-04-23 2015-11-18 2016-10-05 8856 ENSG00000144852 OTTHUMG00000159400 uc003edk.3 AF061056 NM_003889 "CCDS2995|CCDS43136|CCDS54627" O75469 "9727070|9770465" MGI:1337040 RGD:69057 NR1I2 603065 objectId:606 +HGNC:7969 NR1I3 nuclear receptor subfamily 1 group I member 3 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "MB67|CAR1|CAR" constitutive androstane receptor nuclear receptor subfamily 1, group I, member 3 Nuclear hormone receptors 71 1999-09-23 2015-11-18 2015-11-18 9970 ENSG00000143257 OTTHUMG00000034347 uc001fzy.4 Z30425 XM_005245693 "CCDS1228|CCDS41427|CCDS41428|CCDS41429|CCDS41430|CCDS44260|CCDS44261|CCDS44262|CCDS53405|CCDS53406|CCDS53407|CCDS53408|CCDS53409|CCDS53410|CCDS53411" Q14994 8114692 MGI:1346307 RGD:621400 NR1I3 603881 objectId:607 +HGNC:7970 NR1I4 nuclear receptor subfamily 1 group I member 4 other unknown Approved reserved reserved CAR2 nuclear receptor subfamily 1, group I, member 4 1999-09-23 2015-11-18 2015-11-18 22817 +HGNC:7971 NR2C1 nuclear receptor subfamily 2 group C member 1 protein-coding gene gene with protein product Approved 12q22 12q22 TR2-11 TR2 nuclear receptor subfamily 2, group C, member 1 Nuclear hormone receptors 71 1998-05-15 2015-11-18 2015-11-18 7181 ENSG00000120798 OTTHUMG00000170131 uc001tdm.6 M29960 NM_003297 "CCDS9051|CCDS41821|CCDS44953" P13056 2597158 MGI:1352465 RGD:3200 NR2C1 601529 objectId:613 +HGNC:7972 NR2C2 nuclear receptor subfamily 2 group C member 2 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "TAK1|TR2R1|hTAK1" TR4 nuclear receptor subfamily 2, group C, member 2 Nuclear hormone receptors 71 1998-05-15 2015-11-18 2016-10-05 7182 ENSG00000177463 OTTHUMG00000129839 uc003bzi.4 L27586 NM_003298 "CCDS2621|CCDS74905" P49116 "8661150|8016112" MGI:1352466 RGD:3201 NR2C2 601426 objectId:614 +HGNC:30763 NR2C2AP nuclear receptor 2C2 associated protein protein-coding gene gene with protein product Approved 19p13.11 19p13.11 TRA16 TR4 orphan receptor associated protein TRA16 2008-01-10 2016-02-15 2016-02-15 126382 ENSG00000184162 OTTHUMG00000169225 uc002nlx.4 AY101377 NM_176880 "CCDS32967|CCDS74316" Q86WQ0 12486131 MGI:1922942 RGD:1561190 NR2C2AP 608719 +HGNC:7973 NR2E1 nuclear receptor subfamily 2 group E member 1 protein-coding gene gene with protein product Approved 6q21 06q21 "TLL|XTLL" TLX nuclear receptor subfamily 2, group E, member 1 Nuclear hormone receptors 71 1998-07-15 2015-11-18 2015-11-18 7101 ENSG00000112333 OTTHUMG00000015319 uc003psg.4 Y13276 NM_003269 "CCDS5063|CCDS69165" Q9Y466 9628820 MGI:1100526 RGD:1595162 NR2E1 603849 objectId:615 +HGNC:7974 NR2E3 nuclear receptor subfamily 2 group E member 3 protein-coding gene gene with protein product Approved 15q23 15q23 "PNR|rd7|RP37" nuclear receptor subfamily 2, group E, member 3 Nuclear hormone receptors 71 1999-09-16 2015-11-18 2015-11-18 10002 ENSG00000278570 OTTHUMG00000172841 uc032cil.2 NM_014249 "CCDS73750|CCDS73751" Q9Y5X4 10220376 MGI:1346317 RGD:2318602 "Mutations of the Photoreceptor cell-specific Nuclear Receptor|http://www.retina-international.org/files/sci-news/nr2e3mut.htm|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=NR2E3" NR2E3 604485 123912 objectId:616 +HGNC:7975 NR2F1 nuclear receptor subfamily 2 group F member 1 protein-coding gene gene with protein product Approved 5q15 05q15 "EAR-3|COUP-TFI|TCFCOUP1|SVP44" "ERBAL3|TFCOUP1" nuclear receptor subfamily 2, group F, member 1 Nuclear hormone receptors 71 1995-03-21 2015-11-18 2016-10-05 7025 ENSG00000175745 OTTHUMG00000119079 uc003kkj.4 BC004154 NM_005654 CCDS4068 P10589 8530078 MGI:1352451 RGD:621682 NR2F1 132890 403297 objectId:617 +HGNC:48622 NR2F1-AS1 NR2F1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q15 05q15 FLJ42709 2013-05-21 2013-05-28 2013-05-28 2013-05-28 441094 ENSG00000237187 OTTHUMG00000162643 "BC010610|DA718791" NR_021490 23583100 +HGNC:7976 NR2F2 nuclear receptor subfamily 2 group F member 2 protein-coding gene gene with protein product Approved 15q26.2 15q26.2 "COUP-TFII|COUPTFB|SVP40|NF-E3" "ARP1|TFCOUP2" nuclear receptor subfamily 2, group F, member 2 Nuclear hormone receptors 71 1995-03-21 2015-11-18 2016-10-05 7026 ENSG00000185551 OTTHUMG00000149848 uc010uri.3 M64497 NM_021005 "CCDS10375|CCDS45358|CCDS45359" P24468 "8530078|11544252" MGI:1352452 RGD:69305 NR2F2 107773 402562 objectId:618 +HGNC:44222 NR2F2-AS1 NR2F2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q26.2 15q26.2 NR2F2 antisense RNA 1 (non-protein coding) 2012-07-09 2012-08-15 2012-10-12 644192 ENSG00000247809 OTTHUMG00000171855 uc059npo.1 AK000872 XR_109225 +HGNC:7977 NR2F6 nuclear receptor subfamily 2 group F member 6 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 EAR-2 ERBAL2 nuclear receptor subfamily 2, group F, member 6 Nuclear hormone receptors 71 1989-02-23 2015-11-18 2015-11-18 2063 ENSG00000160113 OTTHUMG00000182728 uc002nfq.4 X12794 NM_005234 CCDS12352 P10588 2905047 MGI:1352453 RGD:621685 NR2F6 132880 objectId:619 +HGNC:7978 NR3C1 nuclear receptor subfamily 3 group C member 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 GR glucocorticoid receptor GRL "nuclear receptor subfamily 3, group C, member 1|nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)" Nuclear hormone receptors 71 2001-06-22 2015-11-18 2016-10-05 2908 ENSG00000113580 OTTHUMG00000129677 uc003lnd.3 X03225 XM_005268419 "CCDS4278|CCDS34258|CCDS47298" P04150 2867473 MGI:95824 RGD:2741 NR3C1 138040 123916 objectId:625 +HGNC:4592 NR3C1P1 nuclear receptor subfamily 3 group C member 1 pseudogene 1 pseudogene pseudogene Approved 16q24.2 16q24.2 "GRLL1|NR3C1P" "glucocorticoid receptor-like 1|nuclear receptor subfamily 3, group C, member 1 pseudogene|nuclear receptor subfamily 3, group C, member 1 pseudogene 1" 2001-06-22 2010-02-26 2015-11-18 2015-11-18 2910 NG_029774 2867473 138060 PGOHUM00000249184 +HGNC:7979 NR3C2 nuclear receptor subfamily 3 group C member 2 protein-coding gene gene with protein product Approved 4q31 04q31 MR MLR nuclear receptor subfamily 3, group C, member 2 Nuclear hormone receptors 71 1988-08-19 2015-11-18 2015-11-18 4306 ENSG00000151623 OTTHUMG00000161455 uc063acs.1 M16801 XM_011531976 "CCDS3772|CCDS54811" P08235 2558856 MGI:99459 RGD:3094 NR3C2 600983 123920 objectId:626 +HGNC:7980 NR4A1 nuclear receptor subfamily 4 group A member 1 protein-coding gene gene with protein product Approved 12q13 12q13 "TR3|N10|NAK-1|NGFIB|NUR77" "HMR|GFRP1" nuclear receptor subfamily 4, group A, member 1 Nuclear hormone receptors 71 1990-09-10 2015-11-18 2015-11-18 3164 ENSG00000123358 OTTHUMG00000150393 uc001rzt.4 L13740 XM_017019247 "CCDS8818|CCDS55828|CCDS73471" P22736 2626032 MGI:1352454 RGD:620029 NR4A1 139139 objectId:629 +HGNC:7981 NR4A2 nuclear receptor subfamily 4 group A member 2 protein-coding gene gene with protein product Approved 2q22-q23 02q22-q23 "TINUR|NOT|RNR1|HZF-3" NURR1 nuclear receptor subfamily 4, group A, member 2 Nuclear hormone receptors 71 1997-07-11 2015-11-18 2015-11-18 4929 ENSG00000153234 OTTHUMG00000131950 uc061osi.1 X75918 XM_005246621 CCDS2201 P43354 7706727 MGI:1352456 RGD:3202 NR4A2 601828 objectId:630 +HGNC:7982 NR4A3 nuclear receptor subfamily 4 group A member 3 protein-coding gene gene with protein product Approved 9q22 09q22 "CSMF|CHN|NOR1|MINOR" nuclear receptor subfamily 4, group A, member 3 Nuclear hormone receptors 71 1999-09-24 2015-11-18 2015-11-18 8013 ENSG00000119508 OTTHUMG00000021030 uc022bky.1 U12767 XM_017015162 "CCDS6742|CCDS6743|CCDS6744" Q92570 8614405 MGI:1352457 RGD:61882 NR4A3 600542 361071 objectId:631 +HGNC:7983 NR5A1 nuclear receptor subfamily 5 group A member 1 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "FTZ1|SF-1|ELP|AD4BP|hSF-1" steroidogenic factor 1 FTZF1 nuclear receptor subfamily 5, group A, member 1 Nuclear hormone receptors 71 1994-06-07 2015-11-18 2016-10-05 2516 ENSG00000136931 OTTHUMG00000020655 uc004boo.2 D88155 NM_004959 CCDS6856 Q13285 7789992 MGI:1346833 RGD:68350 NR5A1 184757 168312 objectId:632 +HGNC:7984 NR5A2 nuclear receptor subfamily 5 group A member 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "FTZ-F1beta|hB1F|LRH-1|FTZ-F1|hB1F-2|B1F2" liver receptor homolog-1 FTF nuclear receptor subfamily 5, group A, member 2 Nuclear hormone receptors 71 1998-05-13 2015-11-18 2016-10-05 2494 ENSG00000116833 OTTHUMG00000035635 uc001gvb.5 U93553 XM_017000904 "CCDS1400|CCDS1401|CCDS60383" O00482 "9858833|7680097" MGI:1346834 RGD:68353 NR5A2 604453 objectId:633 +HGNC:7985 NR6A1 nuclear receptor subfamily 6 group A member 1 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "GCNF1|RTR|CT150" GCNF nuclear receptor subfamily 6, group A, member 1 Nuclear hormone receptors 71 1997-08-22 2015-11-18 2015-11-18 2649 ENSG00000148200 OTTHUMG00000020661 uc004bor.3 U64876 XM_005251917 "CCDS35137|CCDS55340|CCDS65127" Q15406 "9134503|8982251" MGI:1352459 RGD:1564740 NR6A1 602778 objectId:634 +HGNC:19337 NRADDP neurotrophin receptor associated death domain, pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 2010-03-12 2010-03-12 100129354 ENSG00000236409 OTTHUMG00000154641 NR_024046 "18085818|20210993" MGI:1914419 +HGNC:7988 NRAP nebulin related anchoring protein protein-coding gene gene with protein product Approved 10q25.3 10q25.3 nebulin-related anchoring protein LIM domain containing 1218 1997-04-21 2015-12-04 2016-10-05 4892 ENSG00000197893 OTTHUMG00000019072 uc057wbq.1 NM_006175 "CCDS7578|CCDS7579|CCDS73199" Q86VF7 "12789664|10320340" MGI:1098765 RGD:1306731 NRAP 602873 +HGNC:33843 NRARP NOTCH-regulated ankyrin repeat protein protein-coding gene gene with protein product Approved 9q34.3 09q34.3 MGC61598 Ankyrin repeat domain containing 403 2008-10-15 2014-11-19 441478 ENSG00000198435 OTTHUMG00000156150 uc004cmo.3 NM_001004354 CCDS35188 Q7Z6K4 MGI:1914372 RGD:1591939 NRARP +HGNC:7989 NRAS neuroblastoma RAS viral oncogene homolog protein-coding gene gene with protein product Approved 1p13.2 01p13.2 N-ras neuroblastoma RAS viral (v-ras) oncogene homolog RAS type GTPase family 389 2001-06-22 2016-04-06 2016-10-12 4893 ENSG00000213281 OTTHUMG00000012059 uc009wgu.4 BC005219 NM_002524 CCDS877 P01111 MGI:97376 RGD:3205 "NRASbase: Mutation registry for autoimmune lymphoproliferative syndrome type IV|http://structure.bmc.lu.se/idbase/NRASbase/|LRG_92|http://www.lrg-sequence.org/LRG/LRG_92" NRAS 164790 221346 objectId:2823 +HGNC:7990 NRASL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7991 NRASL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:7992 NRASL3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:48588 NRAV negative regulator of antiviral response (non-protein coding) non-coding RNA RNA, long non-coding Approved 12q24.31 12q24.31 DYNLL1-AS1 DYNLL1 antisense RNA 1 Long non-coding RNAs 788 2013-05-30 2015-01-23 2015-01-23 2015-01-23 100506668 ENSG00000248008 OTTHUMG00000169374 "AK026783|BC065744" NR_038854 25525793 616207 +HGNC:7960 NR0B1 nuclear receptor subfamily 0 group B member 1 protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 "DAX1|AHCH" "AHC|DSS" "dosage-sensitive sex reversal|nuclear receptor subfamily 0, group B, member 1" Nuclear hormone receptors 71 1986-01-01 2015-11-18 2016-10-05 190 ENSG00000169297 OTTHUMG00000021323 uc004dcf.5 S74720 NM_000475 CCDS14223 P51843 "1301166|10412368" MGI:1352460 RGD:62028 "NROB1 - adrenal hypoplasia (DAX1)|http://www.LOVD.nl/NROB1|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NR0B1|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=NR0B1" NR0B1 300473 123902 objectId:635 +HGNC:7961 NR0B2 nuclear receptor subfamily 0 group B member 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 SHP nuclear receptor subfamily 0, group B, member 2 Nuclear hormone receptors 71 1999-08-19 2015-11-18 2016-10-05 8431 ENSG00000131910 OTTHUMG00000004231 uc001bnf.4 AF044316 XM_011542297 CCDS291 Q15466 9603951 MGI:1346344 RGD:621032 NR0B2 604630 objectId:636 +HGNC:19692 NRBF2 nuclear receptor binding factor 2 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "DKFZp564C1664|FLJ30395|COPR1|COPR2" "comodulator of PPAR and RXR 1|comodulator of PPAR and RXR 2" 2004-02-10 2016-10-05 29982 ENSG00000148572 OTTHUMG00000018309 uc001jmj.6 D82519 NM_030759 "CCDS7268|CCDS60537" Q96F24 10786636 MGI:1354950 RGD:61937 NRBF2 616477 +HGNC:44604 NRBF2P1 nuclear receptor binding factor 2 pseudogene 1 pseudogene pseudogene Approved 18q12.2 18q12.2 2012-11-19 2012-11-19 648532 ENSG00000267797 OTTHUMG00000178768 NG_006647 PGOHUM00000235041 +HGNC:44605 NRBF2P2 nuclear receptor binding factor 2 pseudogene 2 pseudogene pseudogene Approved 3p21.31 03p21.31 2012-11-19 2012-11-19 100114903 ENSG00000226933 OTTHUMG00000156499 NG_006645 PGOHUM00000238018 +HGNC:44606 NRBF2P3 nuclear receptor binding factor 2 pseudogene 3 pseudogene pseudogene Approved 1p13.3 01p13.3 2012-11-19 2012-11-19 643232 ENSG00000237415 OTTHUMG00000034490 NG_006643 PGOHUM00000244140 +HGNC:44607 NRBF2P4 nuclear receptor binding factor 2 pseudogene 4 pseudogene pseudogene Approved 8q23.1 08q23.1 2012-11-19 2012-11-19 728381 ENSG00000253228 OTTHUMG00000164894 NG_006642 PGOHUM00000249773 +HGNC:44683 NRBF2P5 nuclear receptor binding factor 2 pseudogene 5 pseudogene pseudogene Approved 10p15.1 10p15.1 2012-12-04 2016-08-15 100118954 ENSG00000270427 OTTHUMG00000184677 NG_006646 PGOHUM00000290039 +HGNC:7993 NRBP1 nuclear receptor binding protein 1 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "BCON3|MUDPNP|MADM" NRBP nuclear receptor binding protein 2000-02-18 2005-12-22 2005-12-22 2016-10-05 29959 ENSG00000115216 OTTHUMG00000097789 uc002rko.4 AF113249 NM_013392 "CCDS1753|CCDS82433" Q9UHY1 "10843813|11956649" MGI:2183436 RGD:1589575 NRBP1 606010 objectId:2126 +HGNC:19339 NRBP2 nuclear receptor binding protein 2 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 DKFZp434P086 2005-01-21 2016-04-25 340371 ENSG00000185189 OTTHUMG00000165157 uc011lkt.3 BC037396 NM_178564 CCDS34959 Q9NSY0 14702039 MGI:2385017 RGD:1591749 NRBP2 615563 objectId:2127 +HGNC:7994 NRCAM neuronal cell adhesion molecule protein-coding gene gene with protein product Approved 7q31.1 07q31.1 "KIAA0343|Bravo" NgCAM-related cell adhesion molecule "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 1996-06-19 2016-10-05 4897 ENSG00000091129 OTTHUMG00000154973 uc022aka.2 NM_001037132 "CCDS5751|CCDS47686|CCDS55153|CCDS75652" Q92823 8812479 MGI:104750 RGD:3209 NRCAM 601581 +HGNC:7995 NRDC nardilysin convertase protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "hNRD1|hNRD2" N-arginine dibasic convertase NRD1 nardilysin (N-arginine dibasic convertase) 1997-12-12 2015-11-11 2015-11-11 2016-10-05 4898 ENSG00000078618 OTTHUMG00000008278 uc001ctc.5 X93207 NM_002525 "CCDS559|CCDS41335|CCDS55599" O43847 "9581555|9479496" MGI:1201386 RGD:3210 602651 M16.005 3.4.24.61 +HGNC:20186 NRDE2 NRDE-2, necessary for RNA interference, domain containing protein-coding gene gene with protein product Approved 14q32.11 14q32.11 FLJ14051 C14orf102 chromosome 14 open reading frame 102 2002-12-20 2012-09-25 2012-09-25 2014-11-19 55051 ENSG00000119720 OTTHUMG00000171020 uc001xyi.3 AK000870 NM_017970 CCDS9890 Q9H7Z3 MGI:2670969 RGD:1565082 +HGNC:16834 NREP neuronal regeneration related protein protein-coding gene gene with protein product Approved 5q22.1 05q22.1 "P311|D4S114|PRO1873|PTZ17|SEZ17" neuronal protein 3.1 C5orf13 "chromosome 5 open reading frame 13|neuronal regeneration related protein homolog (rat)" 2003-02-17 2012-01-23 2012-12-07 2015-08-25 9315 ENSG00000134986 OTTHUMG00000128795 uc063fzf.1 AF119859 NM_004772 "CCDS4105|CCDS47255" Q16612 "8261136|10981724|15485502" MGI:99444 RGD:631411 607332 +HGNC:40780 NREP-AS1 NREP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q22.1 05q22.1 NREP antisense RNA 1 (non-protein coding) 2012-01-23 2012-08-15 2014-11-19 100873948 ENSG00000250095 OTTHUMG00000162860 uc031skr.1 NR_046678 +HGNC:7996 NRF1 nuclear respiratory factor 1 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 "EWG|ALPHA-PAL" alpha palindromic-binding protein 1995-11-01 2016-10-05 4899 ENSG00000106459 OTTHUMG00000143736 uc003voz.4 L22454 NM_001040110 "CCDS5813|CCDS78273" Q16656 2584221 MGI:1332235 RGD:1304603 NRF1 600879 +HGNC:7997 NRG1 neuregulin 1 protein-coding gene gene with protein product Approved 8p12 08p12 "HRG|NDF|GGF" "HGL|NRG1-IT2" NRG1 intronic transcript 2 (non-protein coding) I-set domain containing 593 1999-03-19 2015-01-28 3084 ENSG00000157168 OTTHUMG00000163918 uc064luk.1 L12261 NM_001322205 "CCDS6084|CCDS6085|CCDS6086|CCDS6087|CCDS47836|CCDS55218|CCDS55219|CCDS75727|CCDS6083" Q02297 "1350381|8095334" MGI:96083 RGD:621341 NRG1 142445 +HGNC:43633 NRG1-IT1 NRG1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 8p12 08p12 NRG1 intronic transcript 1 (non-protein coding) 2011-12-06 2015-02-25 2015-02-25 100856811 ENSG00000253974 OTTHUMG00000163966 uc033bgv.2 BC037250 NR_104157 +HGNC:43635 NRG1-IT3 NRG1 intronic transcript 3 non-coding RNA RNA, long non-coding Approved 8p12 08p12 NRG1 intronic transcript 3 (non-protein coding) 2011-12-06 2015-02-25 2015-02-25 100874286 ENSG00000254049 OTTHUMG00000164003 uc031tau.1 NR_047475 +HGNC:7998 NRG2 neuregulin 2 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "Don-1|NTAK|HRG2" "neural- and thymus-derived activator for ErbB kinases|divergent of neuregulin-1" I-set domain containing 593 1999-03-19 2015-02-16 9542 ENSG00000158458 OTTHUMG00000129241 uc003lex.3 NM_013982 "CCDS4217|CCDS54910" O14511 "9168114|9168115" MGI:1098246 RGD:1303302 NRG2 603818 +HGNC:7999 NRG3 neuregulin 3 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 1999-03-19 2015-01-28 10718 ENSG00000185737 OTTHUMG00000018626 uc001kco.3 AK098823 XM_166086 "CCDS31233|CCDS53547" P56975 9275162 MGI:1097165 RGD:1559678 NRG3 605533 +HGNC:31429 NRG3-AS1 NRG3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.1 10q23.1 Em:AC010157.1 C10orf100 "chromosome 10 open reading frame 100|NRG3 antisense RNA 1 (non-protein coding)" 2004-05-27 2012-05-31 2012-08-15 2014-06-16 101929590 ENSG00000225738 OTTHUMG00000018624 uc057uod.1 "CF272718|AA383013|DB052745" NR_120666 +HGNC:29862 NRG4 neuregulin 4 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 HRG4 2005-10-30 2016-10-05 145957 ENSG00000169752 OTTHUMG00000142917 uc002bbo.5 BC017568 NM_138573 CCDS10288 Q8WWG1 12477932 MGI:1933833 RGD:1589860 NRG4 610894 +HGNC:8000 NRGN neurogranin protein-coding gene gene with protein product Approved 11q24.2 11q24.2 RC3 neurogranin (protein kinase C substrate, RC3) 1996-07-17 2015-11-20 2016-10-05 4900 ENSG00000154146 OTTHUMG00000165928 uc001qaq.3 "X99075|X99076" NM_006176 CCDS8451 Q92686 9143500 MGI:1927184 RGD:61833 NRGN 602350 +HGNC:8001 NRIP1 nuclear receptor interacting protein 1 protein-coding gene gene with protein product Approved 21q11.2-q21.1 21q11.2-q21.1 RIP140 "receptor interacting protein 140|nuclear factor RIP140" 1998-12-18 2016-10-11 8204 ENSG00000180530 OTTHUMG00000074323 uc061zce.1 X84373 NM_003489 CCDS13568 P48552 "7641693|9521594" MGI:1315213 RGD:1311850 NRIP1 602490 +HGNC:23078 NRIP2 nuclear receptor interacting protein 2 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 DKFZP761G1913 2003-09-03 2014-11-19 83714 ENSG00000053702 OTTHUMG00000130616 uc001qlc.4 AK054740 NM_031474 CCDS8514 Q9BQI9 11230166 MGI:1891884 RGD:1589959 NRIP2 +HGNC:1167 NRIP3 nuclear receptor interacting protein 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 C11orf14 chromosome 11 open reading frame 14 2000-07-31 2003-09-05 2003-09-03 2016-10-05 56675 ENSG00000175352 OTTHUMG00000165680 uc001mhg.2 AJ400877 NM_020645 CCDS31422 Q9NQ35 11528127 MGI:1925843 RGD:1304777 NRIP3 613125 +HGNC:51269 NRIR negative regulator of interferon response (non-protein coding) non-coding RNA RNA, long non-coding Approved 2p25.2 02p25.2 lncRNA-CMPK2 Long non-coding RNAs 788 2014-09-04 2014-09-04 104326052 ENSG00000225964 OTTHUMG00000151730 BQ437827 NR_126359 25122750 +HGNC:25391 NRK Nik related kinase protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 DKFZp686A17109 2004-08-16 2014-11-19 203447 ENSG00000123572 OTTHUMG00000022143 uc065ans.1 BX538345 NM_198465 CCDS65305 Q7Z2Y5 MGI:1351326 RGD:1566163 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NRK NRK 300791 objectId:2128 +HGNC:8002 NRL neural retina leucine zipper protein-coding gene gene with protein product Approved 14q11.2-q12 14q11.2-q12 "D14S46E|RP27|NRL-MAF" Basic leucine zipper proteins 506 1997-05-22 2016-10-11 4901 ENSG00000129535 OTTHUMG00000028789 uc001wlq.4 XM_011536801 CCDS9608 P54845 "1427865|10192380" MGI:102567 RGD:1305197 Mutations of the Neuroretina-linked Leucine Zipper Gene|http://www.retina-international.org/files/sci-news/nrlmut.htm NRL 162080 123930 +HGNC:8003 NRM nurim (nuclear envelope membrane protein) protein-coding gene gene with protein product Approved 6p21.33 06p21.33 NRM29 1999-09-20 2016-10-05 11270 ENSG00000137404 OTTHUMG00000031223 uc003nrc.4 AF143676 XM_017010224 "CCDS4686|CCDS59498" Q8IXM6 "10402458|17517639" MGI:2146855 RGD:1302966 NRM +HGNC:17972 NRN1 neuritin 1 protein-coding gene gene with protein product Approved 6p25.1 06p25.1 NRN 2002-05-29 2014-11-19 51299 ENSG00000124785 OTTHUMG00000014184 uc032wjw.2 AF136631 XM_006715106 "CCDS4495|CCDS75393" Q9NPD7 9122250 MGI:1915654 RGD:621586 NRN1 607409 +HGNC:29811 NRN1L neuritin 1 like protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "UNQ2446|MRCC2446" 2007-02-07 2016-01-05 2016-01-05 123904 ENSG00000188038 OTTHUMG00000137541 uc002euu.4 AY358782 NM_198443 CCDS10850 Q496H8 12975309 MGI:2443642 RGD:2301010 NRN1L +HGNC:37079 NRON non-protein coding RNA, repressor of NFAT non-coding RNA RNA, long non-coding Approved 9q33.3 09q33.3 NCRNA00194 "noncoding repressor of NFAT|non-protein coding RNA 194" Long non-coding RNAs 788 2009-07-16 2014-10-22 641373 ENSG00000253079 uc022bnj.2 NR_045006 16141075 MGI:2444126 609618 NRON +HGNC:8004 NRP1 neuropilin 1 protein-coding gene gene with protein product Approved 10p11.22 10p11.22 "NRP|VEGF165R|CD304" CD molecules 471 1998-12-23 2016-10-05 8829 ENSG00000099250 OTTHUMG00000019343 uc057srb.1 AF016050 XM_006717523 "CCDS7177|CCDS31179|CCDS31180|CCDS81448" O14786 "9529250|9331348" MGI:106206 RGD:621588 NRP1 602069 CD304 +HGNC:8005 NRP2 neuropilin 2 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 VEGF165R2 1998-12-23 2015-09-01 8828 ENSG00000118257 OTTHUMG00000132893 uc002vau.4 AF016098 XM_005246933 "CCDS2364|CCDS2365|CCDS46496|CCDS46497|CCDS46498|CCDS46499" O60462 "9529250|9331348" MGI:1100492 RGD:621442 NRP2 602070 +HGNC:24613 NRROS negative regulator of reactive oxygen species protein-coding gene gene with protein product Approved 3q29 03q29 "UNQ3030|ELLP3030|MGC50789|GARPL1" LRRC33 leucine rich repeat containing 33 2005-02-25 2013-07-02 2013-07-02 2014-11-18 375387 ENSG00000174004 OTTHUMG00000155569 AY358322 NM_198565 CCDS3319 Q86YC3 12975309 MGI:2445095 RGD:1310771 615322 +HGNC:17881 NRSN1 neurensin 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 p24 VMP vesicular membrane protein p24 2002-01-16 2006-07-04 2006-07-04 2016-10-05 140767 ENSG00000152954 OTTHUMG00000016406 uc010jpq.1 AF418980 NM_080723 CCDS4549 Q8IZ57 12463420 MGI:894662 RGD:1307833 NRSN1 616630 +HGNC:16229 NRSN2 neurensin 2 protein-coding gene gene with protein product Approved 20p13 20p13 dJ1103G7.6 C20orf98 chromosome 20 open reading frame 98 2001-07-17 2006-07-04 2006-07-04 2016-08-10 80023 ENSG00000125841 OTTHUMG00000031628 uc002wdi.5 AL136915 NM_024958 CCDS12996 Q9GZP1 "16527258|26055238" MGI:2684969 RGD:1586322 NRSN2 610666 +HGNC:51222 NRSN2-AS1 NRSN2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p13 20p13 2014-08-08 2014-08-08 100507459 ENSG00000225377 OTTHUMG00000031624 BG249690 NR_109990 +HGNC:8007 NRTN neurturin protein-coding gene gene with protein product Approved 19p13.3 19p13.3 NTN prepro-neurturin Endogenous ligands 542 1997-05-15 2014-11-19 4902 ENSG00000171119 OTTHUMG00000180555 uc002mde.4 U78110 NM_004558 CCDS12151 Q99748 8945474 MGI:108417 RGD:621494 NRTN 602018 123934 +HGNC:8008 NRXN1 neurexin 1 protein-coding gene gene with protein product Approved 2p16.3 02p16.3 "KIAA0578|Hs.22998" 1998-10-14 2015-09-01 9378 ENSG00000179915 OTTHUMG00000129263 uc061jbg.1 AB011150 NM_001135659 "CCDS1845|CCDS46282|CCDS54360|CCDS82444|CCDS82445|CCDS82446|CCDS82447|CCDS82449|CCDS82450|CCDS82451" "P58400|Q9ULB1" MGI:1096391 RGD:628659 NRXN1 600565 201091 +HGNC:8009 NRXN2 neurexin 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 neurexin II 1998-10-14 2016-10-05 9379 ENSG00000110076 OTTHUMG00000045214 uc021qkw.2 NM_015080 "CCDS8077|CCDS31597|CCDS8078" "P58401|Q9P2S2" 1621094 MGI:1096362 RGD:620211 NRXN2 600566 +HGNC:8010 NRXN3 neurexin 3 protein-coding gene gene with protein product Approved 14q31 14q31 KIAA0743 C14orf60 chromosome 14 open reading frame 60 1998-10-14 2015-09-01 9369 ENSG00000021645 OTTHUMG00000171502 uc284nlf.1 AB018286 NM_001105250 "CCDS9870|CCDS9871|CCDS45145|CCDS61515|CCDS81831" "Q9HDB5|Q9Y4C0" "11944992|12379233" MGI:1096389 RGD:620212 NRXN3 600567 +HGNC:30728 NSA2 NSA2, ribosome biogenesis homolog protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "HUSSY-29|HCLG1|FLJ94393|TINP1" "hairy cell leukemia protein 1|TGF beta-inducible nuclear protein 1" NSA2 ribosome biogenesis homolog (S. cerevisiae) 2009-09-02 2015-11-27 2015-11-27 10412 ENSG00000164346 OTTHUMG00000131273 uc003kdk.3 AF077615 NM_014886 "CCDS4025|CCDS75260" O95478 "11124703|10486207" MGI:1913883 RGD:621335 NSA2 612497 +HGNC:14234 NSD1 nuclear receptor binding SET domain protein 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "ARA267|FLJ22263|KMT3B" STO Sotos syndrome "PHD finger proteins|Lysine methyltransferases|PWWP domain containing" "88|487|1147" 2002-02-25 2003-03-12 2016-10-12 64324 ENSG00000165671 OTTHUMG00000130846 uc003mfr.5 AK026066 NM_172349 "CCDS4412|CCDS4413" Q96L73 "9628876|11896389" MGI:1276545 RGD:1307748 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=NSD1|LRG_512|http://www.lrg-sequence.org/LRG/LRG_512" NSD1 606681 123937 objectId:2696 +HGNC:13398 NSDHL NAD(P) dependent steroid dehydrogenase-like protein-coding gene gene with protein product Approved Xq28 Xq28 "XAP104|H105e3|SDR31E1" short chain dehydrogenase/reductase family 31E, member 1 Short chain dehydrogenase/reductase superfamily 743 2004-04-30 2015-08-25 50814 ENSG00000147383 OTTHUMG00000024185 uc004fgs.2 X96621 NM_015922 CCDS14717 Q15738 "10710235|12837764|19027726" MGI:1099438 RGD:1359337 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NSDHL NSDHL 300275 123942 1.1.1.170 +HGNC:8016 NSF N-ethylmaleimide sensitive factor, vesicle fusing ATPase protein-coding gene gene with protein product Approved 17q21.31 17q21.31 SKD2 N-ethylmaleimide-sensitive factor-like protein "N-ethylmaleimide-sensitive factor|N-ethylmaleimide sensitive factor" AAA ATPases 413 1996-08-28 2016-07-01 2016-10-05 4905 ENSG00000073969 OTTHUMG00000134315 uc002iku.4 NM_006178 CCDS42354 P46459 "1315316|8875895" MGI:104560 RGD:621594 NSF 601633 3.6.4.6 +HGNC:15912 NSFL1C NSFL1 cofactor protein-coding gene gene with protein product Approved 20p13 20p13 "dJ776F14.1|p47|UBXD10|UBX1|UBXN2C" "SHP1 homolog (S. cerevisiae)|UBX domain protein 2C" NSFL1 (p97) cofactor (p47) UBX domain containing 364 2001-06-21 2016-04-25 2016-04-25 55968 ENSG00000088833 OTTHUMG00000031665 uc002wfc.3 AF112211 NM_016143 "CCDS13015|CCDS13016|CCDS56175" Q9UNZ2 11042152 MGI:3042273 RGD:619952 NSFL1C 606610 +HGNC:31405 NSFP1 N-ethylmaleimide-sensitive factor pseudogene 1 pseudogene pseudogene Approved 17q21.31 17q21.31 NSFP N-ethylmaleimide-sensitive factor pseudogene 2004-04-06 2010-02-26 2010-02-26 2014-11-19 728806 ENSG00000260075 OTTHUMG00000177127 NR_033799 PGOHUM00000237417 +HGNC:24548 NSL1 NSL1, MIS12 kinetochore complex component protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "DC8|DKFZP566O1646|MIS14" C1orf48 "chromosome 1 open reading frame 48|NSL1, MIND kinetochore complex component, homolog (S. cerevisiae)" MIS12 kinetochore complex 1322 2004-11-17 2006-11-07 2013-07-03 2016-10-05 25936 ENSG00000117697 OTTHUMG00000036806 uc001hjn.4 AF255793 NM_015471 "CCDS1509|CCDS73025|CCDS53474" Q96IY1 20819937 MGI:2685830 RGD:1562052 NSL1 609174 +HGNC:8017 NSMAF neutral sphingomyelinase activation associated factor protein-coding gene gene with protein product Approved 8q12.1 08q12.1 "FAN|GRAMD5" neutral sphingomyelinase (N-SMase) activation associated factor "WD repeat domain containing|GRAM domain containing|BEACH domain containing " "362|1146|1230" 1998-11-04 2015-11-10 2015-11-17 8439 ENSG00000035681 OTTHUMG00000164352 uc003xtt.4 X96586 NM_003580 "CCDS6173|CCDS47864" Q92636 "8808629|10640829" MGI:1341864 RGD:727868 NSMAF 603043 objectId:2495 +HGNC:29897 NSMCE1 NSE1 homolog, SMC5-SMC6 complex component protein-coding gene gene with protein product Approved 16p12.1 16p12.1 NSE1 non-SMC element 1 homolog (S. cerevisiae) SMC5-6 protein complex 1034 2005-01-12 2015-07-03 2015-07-03 197370 ENSG00000169189 OTTHUMG00000131674 uc002doi.2 AF161451 NM_145080 CCDS10628 Q8WV22 11927594 MGI:1914961 RGD:1307760 NSMCE1 +HGNC:26513 NSMCE2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "FLJ32440|MMS21|NSE2|ZMIZ7" zinc finger, MIZ-type containing 7 C8orf36 "chromosome 8 open reading frame 36|non-SMC element 2 homolog (MMS21, S. cerevisiae)|non-SMC element 2, MMS21 homolog (S. cerevisiae)" "Zinc fingers MIZ-type|SMC5-6 protein complex" "85|1034" 2005-07-27 2006-07-05 2015-08-05 2015-08-25 286053 ENSG00000156831 OTTHUMG00000164993 uc003yrw.3 AK057002 NM_173685 CCDS6356 Q96MF7 "16055714|21550342" MGI:1915751 RGD:1305156 NSMCE2 444717 +HGNC:7677 NSMCE3 NSE3 homolog, SMC5-SMC6 complex component protein-coding gene gene with protein product Approved 15q13.1 15q13.1 "HCA4|MAGEG1|MAGEL3|NSE3" NDNL2 "necdin-like 2|necdin-like 2, SMC5-SMC6 complex component" "SMC5-6 protein complex|MAGE family" "1034|1136" 2000-06-19 2015-11-19 2015-11-19 2015-11-19 56160 ENSG00000185115 OTTHUMG00000129261 uc001zco.4 AF490510 NM_138704 CCDS10023 Q96MG7 18086888 MGI:1913897 RGD:1309206 608243 +HGNC:25935 NSMCE4A NSE4 homolog A, SMC5-SMC6 complex component protein-coding gene gene with protein product Approved 10q26.13 10q26.13 "FLJ20003|bA500G22.3|NSE4A" C10orf86 "chromosome 10 open reading frame 86|non-SMC element 4 homolog A (S. cerevisiae)|NSE4 homolog, SMC5-SMC6 complex component A" SMC5-6 protein complex 1034 2004-03-16 2006-11-24 2015-07-30 2015-07-30 54780 ENSG00000107672 OTTHUMG00000019180 uc001lfs.4 AF258584 NM_017615 CCDS7624 Q9NXX6 "15752197|18086888" MGI:1915122 RGD:1309025 NSMCE4A 612987 +HGNC:29843 NSMF NMDA receptor synaptonuclear signaling and neuronal migration factor protein-coding gene gene with protein product Approved 9q34.3 09q34.3 NELF nasal embryonic LHRH factor 2004-03-25 2013-01-14 2013-01-14 2014-11-19 26012 ENSG00000165802 OTTHUMG00000020989 uc004cmz.4 NM_015537 "CCDS7044|CCDS48067|CCDS48068|CCDS48069|CCDS55357" Q6X4W1 "11230166|10898796" MGI:1861755 RGD:619819 NSMF 608137 123757 +HGNC:25305 NSRP1 nuclear speckle splicing regulatory protein 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "DKFZP434K1421|NSrp70" CCDC55 coiled-coil domain containing 55 2006-01-12 2011-05-24 2011-05-24 2014-11-18 84081 ENSG00000126653 OTTHUMG00000132754 uc002heu.5 AL136806 NM_032141 "CCDS11255|CCDS74025" Q9H0G5 11230166 MGI:2144305 RGD:1309863 NSRP1 616173 +HGNC:38087 NSRP1P1 nuclear speckle splicing regulatory protein 1 pseudogene 1 pseudogene pseudogene Approved 1p31.1 01p31.1 CCDC55P1 coiled-coil domain containing 55 pseudogene 1 2010-04-13 2011-05-24 2011-05-24 2014-11-18 100420557 ENSG00000235613 OTTHUMG00000040562 NG_022784 PGOHUM00000244763 +HGNC:25994 NSUN2 NOP2/Sun RNA methyltransferase family member 2 protein-coding gene gene with protein product Approved 5p15.31 05p15.31 "FLJ20303|TRM4|Misu" "tRNA methyltransferase 4 homolog (S. cerevisiae)|Myc-induced SUN-domain-containing protein" MRT5 "NOL1/NOP2/Sun domain family, member 2|NOP2/Sun domain family, member 2|mental retardation, non-syndromic, autosomal recessive, 5" NOP2/Sun RNA methyltransferase family 664 2004-08-25 2015-11-17 2016-10-05 54888 ENSG00000037474 OTTHUMG00000090455 uc003jdu.4 AK000310 NM_017755 "CCDS3869|CCDS54832" Q08J23 "17071714|22541559" MGI:107252 RGD:1311954 NSUN2 610916 302903 +HGNC:26208 NSUN3 NOP2/Sun RNA methyltransferase family member 3 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 FLJ22609 "NOL1/NOP2/Sun domain family, member 3|NOP2/Sun domain family, member 3" NOP2/Sun RNA methyltransferase family 664 2004-08-25 2015-11-17 2015-11-17 63899 ENSG00000178694 OTTHUMG00000159025 uc003drl.2 BC020602 NM_022072 CCDS2927 Q9H649 12477932 MGI:2146565 RGD:2322119 NSUN3 +HGNC:31802 NSUN4 NOP2/Sun RNA methyltransferase family member 4 protein-coding gene gene with protein product Approved 1p33 01p33 "MGC22960|SHTAP" sperm head and tail associated protein "NOL1/NOP2/Sun domain family, member 4|NOP2/Sun domain family, member 4" NOP2/Sun RNA methyltransferase family 664 2004-08-25 2015-11-17 2016-10-05 387338 ENSG00000117481 OTTHUMG00000007808 uc001cpr.3 AK021577 NM_199044 "CCDS534|CCDS57996" Q96CB9 MGI:1919431 RGD:1559652 NSUN4 615394 +HGNC:16385 NSUN5 NOP2/Sun RNA methyltransferase family member 5 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "NOL1R|p120(NOL1)|FLJ10267|NSUN5A|Ynl022cL" NOP2/Sun domain family, member 5A "WBSCR20|WBSCR20A" "Williams Beuren syndrome chromosome region 20A|NOL1/NOP2/Sun domain family, member 5|NOP2/Sun domain family, member 5" NOP2/Sun RNA methyltransferase family 664 2001-08-24 2005-01-14 2015-11-17 2015-11-17 55695 ENSG00000130305 OTTHUMG00000129869 uc011kev.4 AF420249 NM_148956 "CCDS5546|CCDS5547|CCDS55118|CCDS55119" Q96P11 "11978965|12073013" MGI:2140844 RGD:1309268 NSUN5 615732 +HGNC:19146 NSUN5P1 NOP2/Sun RNA methyltransferase family member 5 pseudogene 1 pseudogene pseudogene Approved 7q11.23 07q11.23 WBSCR20B Williams Beuren syndrome chromosome region 20B NSUN5B "NOL1/NOP2/Sun domain family, member 5B|NOP2/Sun domain family, member 5 pseudogene 1" 2006-02-02 2010-02-15 2015-11-17 2015-11-17 155400 ENSG00000223705 OTTHUMG00000156108 AF416610 NR_033322 Q3KNT7 12073013 NSUN5P1 +HGNC:16609 NSUN5P2 NOP2/Sun RNA methyltransferase family member 5 pseudogene 2 pseudogene pseudogene Approved 7q11.23 07q11.23 "WBSCR20C|MGC15057|FLJ11626|DKFZp434K058|NOL1R2|WBSCR20B" Williams Beuren syndrome chromosome region 20C NSUN5C "NOL1/NOP2/Sun domain family, member 5C|NOP2/Sun domain family, member 5 pseudogene 2" 2006-02-02 2010-02-15 2015-11-17 2015-11-17 260294 ENSG00000106133 OTTHUMG00000129829 AF416611 NR_033323 Q63ZY6 "12073013|11978965" NSUN5P2 +HGNC:23529 NSUN6 NOP2/Sun RNA methyltransferase family member 6 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 FLJ23743 "NOPD1|ARL5B-AS1" "NOL1/NOP2/Sun domain family, member 6|ARL5B antisense RNA 1|NOP2/Sun domain family, member 6" NOP2/Sun RNA methyltransferase family 664 2003-11-21 2004-08-26 2015-11-17 2016-10-05 221078 ENSG00000241058 OTTHUMG00000017767 uc010qcp.2 BC035778 NM_182543 CCDS7130 Q8TEA1 MGI:1921705 RGD:1309535 NSUN6 +HGNC:25857 NSUN7 NOP2/Sun RNA methyltransferase family member 7 protein-coding gene gene with protein product Approved 4p14 04p14 FLJ14001 "NOL1/NOP2/Sun domain family, member 7|NOP2/Sun domain family, member 7" NOP2/Sun RNA methyltransferase family 664 2006-05-22 2015-11-17 2015-11-17 79730 ENSG00000179299 OTTHUMG00000128597 uc003gvj.4 BC036568 NM_024677 "CCDS3461|CCDS82917" Q8NE18 17442852 MGI:1918168 RGD:1310137 NSUN7 +HGNC:8020 NT3 3'-nucleotidase other unknown Approved reserved reserved 1989-02-23 2013-03-27 4877 3.1.3.5 +HGNC:17144 NT5C 5', 3'-nucleotidase, cytosolic protein-coding gene gene with protein product Approved 17q25 17q25 "DNT1|DNT-1|PN-I|cdN|dNT-1" UMPH2 "5' nucleotidase, deoxy (pyrimidine), cytosolic type C|uridine 5-prime monophosphate hydrolase 2" 5'-nucleotidases 1042 2001-11-20 2002-05-23 2014-11-19 30833 ENSG00000125458 OTTHUMG00000179346 uc002jmx.4 AF154829 XR_429885 CCDS11715 Q8TCD5 10899995 MGI:1354954 RGD:2321875 NT5C 191720 objectId:1238 3.1.3.5 +HGNC:17819 NT5C1A 5'-nucleotidase, cytosolic IA protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "CN-I|CN-IA|CN1A|CN1|MGC119199|MGC119201" "cytosolic 5' nucleotidase, type 1A|AMP-specific 5'-NT|cytosolic 5'-nucleotidase IA" 5'-nucleotidases 1042 2002-04-18 2016-10-05 84618 ENSG00000116981 OTTHUMG00000009244 uc001cdq.1 AF331801 NM_032526 CCDS440 Q9BXI3 "11133996|11690631" MGI:2155700 RGD:1310908 NT5C1A 610525 objectId:1234 3.1.3.5 +HGNC:17818 NT5C1B 5'-nucleotidase, cytosolic IB protein-coding gene gene with protein product Approved 2p24.2 02p24.2 "AIRP|CN-IB" 5'-nucleotidases 1042 2002-04-18 2015-09-01 93034 ENSG00000185013 OTTHUMG00000151765 uc061gxg.1 AF356185 NM_033253 "CCDS33149|CCDS33150" Q96P26 11690631 MGI:1918131 RGD:1309705 NT5C1B 610526 objectId:1235 3.1.3.5 +HGNC:38831 NT5C1B-RDH14 NT5C1B-RDH14 readthrough other readthrough Approved 2p24.2 02p24.2 2011-02-21 2014-11-18 100526794 ENSG00000250741 OTTHUMG00000161546 uc061gxf.1 NM_001199103.1 CCDS56111 +HGNC:8022 NT5C2 5'-nucleotidase, cytosolic II protein-coding gene gene with protein product Approved 10q24.32-q24.33 10q24.32-q24.33 "PNT5|GMP|cN-II|SPG65" purine 5' nucleotidase NT5B 5'-nucleotidase (purine), cytosolic type B 5'-nucleotidases 1042 2000-06-16 2002-04-19 2002-04-18 2016-10-11 22978 ENSG00000076685 OTTHUMG00000018981 uc001kwq.4 D38524 NM_012229 CCDS7544 P49902 "7999131|24482476" MGI:2178563 RGD:2323387 NT5C2 600417 398201 objectId:1236 3.1.3.5 +HGNC:17820 NT5C3A 5'-nucleotidase, cytosolic IIIA protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "UMPH1|PSN1|PN-I|UMPH|P5'N-1|cN-III|p36|POMP|hUMP1" lupin NT5C3 5'-nucleotidase, cytosolic III 5'-nucleotidases 1042 2002-04-18 2013-03-06 2013-03-06 2014-11-19 51251 ENSG00000122643 OTTHUMG00000152983 uc003tdj.5 AF312735 NM_016489 "CCDS34616|CCDS34617|CCDS55101" Q9H0P0 "11042152|10942414" MGI:1927186 RGD:1312013 606224 123953 objectId:1237 3.1.3.5 +HGNC:18530 NT5C3AP1 5'-nucleotidase, cytosolic IIIA pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 UMPH1P NT5C3P1 5'-nucleotidase, cytosolic III pseudogene 1 2002-04-18 2013-03-06 2013-03-06 2013-03-06 90859 ENSG00000213492 OTTHUMG00000059451 NG_000948 11369620 PGOHUM00000245669 +HGNC:28300 NT5C3B 5'-nucleotidase, cytosolic IIIB protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "MGC20781|cN-IIIB" NT5C3L 5'-nucleotidase, cytosolic III-like 2005-11-15 2013-01-31 2013-01-31 2016-04-25 115024 ENSG00000141698 OTTHUMG00000133499 uc021txo.2 NM_052935 CCDS11410 Q969T7 "23223233|24603684" MGI:1915356 RGD:1359229 "3.1.3.5|3.1.3.91" +HGNC:20046 NT5CP1 5',3'-nucleotidase, cytosolic pseudogene 1 pseudogene pseudogene Approved 14q24.3 14q24.3 2003-01-13 2014-11-19 326609 ENSG00000258524 OTTHUMG00000171605 NG_002598 PGOHUM00000247856 +HGNC:20047 NT5CP2 5',3'-nucleotidase, cytosolic pseudogene 2 pseudogene pseudogene Approved 14q24.3 14q24.3 2003-01-13 2014-11-19 326611 ENSG00000258408 OTTHUMG00000171604 NG_002599 PGOHUM00000262890 +HGNC:39789 NT5CP3 5',3'-nucleotidase, cytosolic pseudogene 3 pseudogene pseudogene Approved 13q21.33 13q21.33 2011-03-29 2012-10-16 100420457 NG_024866 PGOHUM00000262885 +HGNC:21556 NT5DC1 5'-nucleotidase domain containing 1 protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "dJ486I3.1|MGC24302" NT5C2L1 5'-nucleotidase, cytosolic II-like 1 2003-06-24 2006-01-27 2006-01-27 2016-10-05 221294 ENSG00000178425 OTTHUMG00000015428 uc003pwj.4 BC015138 NM_152729 CCDS5104 Q5TFE4 MGI:2442446 RGD:1305214 NT5DC1 +HGNC:25717 NT5DC2 5'-nucleotidase domain containing 2 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 FLJ12442 2006-01-27 2014-11-19 64943 ENSG00000168268 OTTHUMG00000158626 uc003deo.4 AF131781 NM_022908 "CCDS2858|CCDS46843" Q9H857 "8619474|9110174" MGI:1917271 RGD:1305524 NT5DC2 +HGNC:30826 NT5DC3 5'-nucleotidase domain containing 3 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "TU12B1-TY|FLJ11266" 2006-02-01 2016-10-05 51559 ENSG00000111696 OTTHUMG00000157017 uc010swe.2 AB032786 NM_016575 CCDS41824 Q86UY8 MGI:3513266 RGD:1593358 NT5DC3 611076 +HGNC:27678 NT5DC4 5'-nucleotidase domain containing 4 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 2006-01-27 2016-10-05 284958 ENSG00000144130 OTTHUMG00000153308 uc002tid.4 BC041437 XM_001716541 Q86YG4 +HGNC:8021 NT5E 5'-nucleotidase ecto protein-coding gene gene with protein product Approved 6q14.3 06q14.3 "CD73|eN|eNT|CALJA" NT5 "5' nucleotidase (CD73)|5'-nucleotidase, ecto (CD73)" "CD molecules|5'-nucleotidases" "471|1042" 1989-02-23 2002-04-19 2016-01-14 2016-10-05 4907 ENSG00000135318 OTTHUMG00000015139 uc003pko.5 X55740 NM_002526 "CCDS5002|CCDS56439" P21589 MGI:99782 RGD:61956 NT5E 129190 289604 objectId:1232 CD73 3.1.3.5 +HGNC:15769 NT5M 5',3'-nucleotidase, mitochondrial protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "dNT-2|dNT2|mdN" 5' nucleotidase, mitochondrial 5'-nucleotidases 1042 2001-06-21 2002-05-23 2014-11-19 56953 ENSG00000205309 OTTHUMG00000059277 uc002grf.4 AF210652 XM_011523967 CCDS32581 Q9NPB1 10899995 MGI:1917127 RGD:1309622 NT5M 605292 objectId:1239 3.1.3.5 +HGNC:29909 NTAN1 N-terminal asparagine amidase protein-coding gene gene with protein product Approved 16p13.11 16p13.11 2004-08-19 2016-10-05 123803 ENSG00000157045 OTTHUMG00000129849 uc002ddd.5 AF092440 NM_173474 "CCDS10558|CCDS73832" Q96AB6 8910481 MGI:108471 RGD:1305160 NTAN1 615367 3.5.1.- +HGNC:45261 NTAN1P1 N-terminal asparagine amidase pseudogene 1 pseudogene pseudogene Approved 10q25.3 10q25.3 2013-03-12 2016-08-16 100420389 ENSG00000270965 OTTHUMG00000184683 NG_025462 PGOHUM00000289997 +HGNC:45262 NTAN1P2 N-terminal asparagine amidase pseudogene 2 pseudogene pseudogene Approved 8q21.3 08q21.3 2013-03-12 2013-03-12 100420307 ENSG00000250569 OTTHUMG00000160478 NG_026048 PGOHUM00000249419 +HGNC:45263 NTAN1P3 N-terminal asparagine amidase pseudogene 3 pseudogene pseudogene Approved 12q15 12q15 2013-03-12 2013-03-12 100420356 ENSG00000256355 OTTHUMG00000169067 NG_024031 PGOHUM00000262198 +HGNC:8023 NTF3 neurotrophin 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 NGF2 Endogenous ligands 542 1991-01-15 2016-10-05 4908 ENSG00000185652 OTTHUMG00000168649 uc001qnl.5 XM_011520963 "CCDS8538|CCDS44806" P20783 1889806 MGI:97380 RGD:619728 NTF3 162660 +HGNC:8024 NTF4 neurotrophin 4 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 "NT-4/5|GLC1O" neurotrophic factor 4 NTF5 neurotrophin 5 (neurotrophin 4/5) Endogenous ligands 542 1992-10-15 2008-01-31 2008-01-31 2014-11-19 4909 ENSG00000225950 OTTHUMG00000191728 uc061ayz.1 NM_006179 CCDS12754 P34130 1496419 MGI:97381 RGD:3212 NTF4 162662 356272 +HGNC:8025 NTF6A neurotrophin 6 alpha (pseudogene) pseudogene pseudogene Approved 19q13.33 19q13.33 "PSI-NT4|NTF5P" NTF6 1992-10-15 2008-01-31 2016-10-05 4910 ENSG00000267019 OTTHUMG00000180607 M86529 NG_029362 "1496419|1313578" PGOHUM00000295058 +HGNC:8026 NTF6B neurotrophin 6 beta (pseudogene) pseudogene pseudogene Approved 19q13.3 19q13.3 1992-12-08 2008-01-31 2012-10-03 4911 ENSG00000267685 OTTHUMG00000180623 S41540 NG_029363 1496419 PGOHUM00000259347 +HGNC:8027 NTF6G neurotrophin 6 gamma (pseudogene) pseudogene pseudogene Approved 19q13.33 19q13.33 neurotrophin 6, gamma pseudogene 1992-12-08 2008-01-31 2016-07-26 4912 ENSG00000267099 OTTHUMG00000180608 S41541 NG_029364 1496419 PGOHUM00000295400 +HGNC:8028 NTHL1 nth like DNA glycosylase 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "NTH1|OCTS3" "nth (E.coli endonuclease III)-like 1|nth endonuclease III-like 1 (E. coli)" DNA glycosylases 1024 1998-05-27 2016-07-15 2016-07-15 4913 ENSG00000065057 OTTHUMG00000128744 uc002col.1 U81285 NM_002528 CCDS10457 P78549 "9045706|8990169" MGI:1313275 RGD:1309289 NTHL1 602656 458253 "3.2.2.-|4.2.99.18" +HGNC:17941 NTM neurotrimin protein-coding gene gene with protein product Approved 11q25 11q25 "HNT|NTRI|IGLON2" "neurotrimin|IgLON family member 2" "I-set domain containing|IgLON cell adhesion molecules" "593|1052" 2009-01-12 2014-11-19 50863 ENSG00000182667 OTTHUMG00000066364 uc001qgp.4 AF126426 NM_016522 "CCDS8491|CCDS41733|CCDS44777|CCDS44778" Q9P121 7891157 MGI:2446259 RGD:620958 NTM 607938 +HGNC:32293 NTM-AS1 NTM antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q25 11q25 FLJ45436 C11orf39 chromosome 11 open reading frame 39 2005-09-22 2015-10-01 2015-10-01 2015-10-01 101929637 ENSG00000224795 OTTHUMG00000066439 AK127362 NR_126159 Q6ZSK4 +HGNC:41437 NTM-IT NTM intronic transcript non-coding RNA RNA, long non-coding Approved 11q25 11q25 NTM-IT3 "NTM intronic transcript 3 (non-protein coding)|NTM intronic transcript (non-protein coding)" 2011-05-31 2013-02-18 2015-02-25 2015-02-25 100874281 ENSG00000238262 OTTHUMG00000150047 uc058jfl.1 AA398869 NR_046820 +HGNC:41435 NTM-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:41436 NTM-IT2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:23373 NTMT1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "AD-003|HOMT1A" "C9orf32|METTL11A" "chromosome 9 open reading frame 32|methyltransferase like 11A" Methyltransferase like 963 2005-11-22 2012-06-12 2012-06-12 2016-10-05 28989 ENSG00000148335 OTTHUMG00000020785 uc033dis.2 AF110776 NM_014064 "CCDS35160|CCDS69682|CCDS75918" Q9BV86 20481588 MGI:1913867 RGD:1306582 613560 2.1.1.244 +HGNC:8029 NTN1 netrin 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 NTN1L Netrin-1 Netrins 661 1999-04-15 2015-02-16 9423 ENSG00000065320 OTTHUMG00000130257 uc002glw.4 U75586 XM_006721595 CCDS11148 O95631 9950216 MGI:105088 RGD:619809 NTN1 601614 +HGNC:8030 NTN3 netrin 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Netrin-3 NTN2L "netrin 2 (chicken)-like|netrin 2-like (chicken)" Netrins 661 1997-02-05 2008-10-29 2008-10-29 2015-09-01 4917 ENSG00000162068 OTTHUMG00000128867 uc002cqj.3 U86759 NM_006181 CCDS10469 O00634 "9143507|10366627" MGI:1341188 RGD:619811 NTN3 602349 +HGNC:13658 NTN4 netrin 4 protein-coding gene gene with protein product Approved 12q22 12q22 "beta-netrin|Netrin-4" Netrins 661 2000-09-27 2014-11-19 59277 ENSG00000074527 OTTHUMG00000170290 uc001tei.3 AF119916 NM_021229 CCDS9054 Q9HB63 11038171 MGI:1888978 RGD:1565947 NTN4 610401 +HGNC:25208 NTN5 netrin 5 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 Netrin-5 Netrins 661 2008-12-01 2013-03-01 126147 ENSG00000142233 OTTHUMG00000183321 uc002pkb.3 NM_145807 CCDS33068 Q8WTR8 12477932 MGI:2685330 RGD:1565197 NTN5 +HGNC:23319 NTNG1 netrin G1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "KIAA0976|Lmnt1" "netrin G1f|Netrin-G1" Netrins 661 2003-12-02 2016-10-05 22854 ENSG00000162631 OTTHUMG00000010965 uc001dvh.5 AB023193 NM_014917 "CCDS30785|CCDS44179|CCDS44180|CCDS81354" Q9Y2I2 10964959 MGI:1934028 RGD:1563465 NTNG1 608818 179408 +HGNC:14288 NTNG2 netrin G2 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "KIAA1857|Lmnt2" Netrin-G2 NTNG1 netrin G1 Netrins 661 2001-01-02 2003-12-03 2003-12-02 2016-10-05 84628 ENSG00000196358 OTTHUMG00000020835 uc004cbh.3 AB058760 NM_032536 CCDS6946 Q96CW9 MGI:2159341 RGD:1307089 NTNG2 +HGNC:28204 NTPCR nucleoside-triphosphatase, cancer-related protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "MGC13186|HCR-NTPase" human cancer-related NTPase C1orf57 chromosome 1 open reading frame 57 2005-05-10 2010-12-20 2010-12-20 2014-11-19 84284 ENSG00000135778 OTTHUMG00000037822 uc001hvj.2 BC005102 NM_032324 CCDS1597 Q9BSD7 17291528 MGI:1913816 RGD:1306192 NTPCR 3.6.1.15 +HGNC:8031 NTRK1 neurotrophic receptor tyrosine kinase 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "TRK|TRKA|MTC" high affinity nerve growth factor receptor neurotrophic tyrosine kinase, receptor, type 1 "Receptor Tyrosine Kinases|Immunoglobulin like domain containing" "321|594" 1991-07-18 2016-03-31 2016-10-12 4914 ENSG00000198400 OTTHUMG00000041304 uc001fqh.2 Y09028 NM_002529 "CCDS1161|CCDS30890|CCDS30891" P04629 2869410 MGI:97383 RGD:620144 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_261|http://www.lrg-sequence.org/LRG/LRG_261" NTRK1 191315 123961 objectId:1817 2.7.10.1 +HGNC:8032 NTRK2 neurotrophic receptor tyrosine kinase 2 protein-coding gene gene with protein product Approved 9q21.33 09q21.33 TRKB neurotrophic tyrosine kinase, receptor, type 2 "Receptor Tyrosine Kinases|I-set domain containing" "321|593" 1991-07-18 2016-03-31 2016-10-05 4915 ENSG00000148053 OTTHUMG00000020120 uc064uau.1 AF410902 XM_005252001 "CCDS6671|CCDS35050|CCDS35051|CCDS35052|CCDS35053" Q16620 7789988 MGI:97384 RGD:3213 NTRK2 600456 363263 objectId:1818 2.7.10.1 +HGNC:8033 NTRK3 neurotrophic receptor tyrosine kinase 3 protein-coding gene gene with protein product Approved 15q25.3 15q25.3 TRKC neurotrophic tyrosine kinase, receptor, type 3 "Receptor Tyrosine Kinases|I-set domain containing" "321|593" 1991-07-18 2016-03-31 2016-10-05 4916 ENSG00000140538 OTTHUMG00000148677 uc002bmf.3 U05012 XM_006720543 "CCDS10340|CCDS32322|CCDS32323|CCDS58399|CCDS81916" Q16288 7806211 MGI:97385 RGD:3214 NTRK3 191316 246681 objectId:1819 2.7.10.1 +HGNC:27532 NTRK3-AS1 NTRK3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q25.3 15q25.3 NTRK3 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 283738 ENSG00000260305 OTTHUMG00000173016 uc021sub.1 AK097486 NR_038229 +HGNC:8038 NTS neurotensin protein-coding gene gene with protein product Approved 12q21.31 12q21.31 "neuromedin N|pro-neurotensin/neuromedin" Endogenous ligands 542 1989-06-02 2015-08-25 4922 ENSG00000133636 OTTHUMG00000169832 uc001tag.4 NM_006183 CCDS9029 P30990 MGI:1328351 RGD:621612 NTS 162650 +HGNC:8039 NTSR1 neurotensin receptor 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 NTR neurotensin receptor 1 (high affinity) Neurotensin receptors 244 1993-11-30 2016-08-25 2016-10-05 4923 ENSG00000101188 OTTHUMG00000032932 uc002ydf.3 XM_011528827 CCDS13502 P30989 8075503 MGI:97386 RGD:1306076 NTSR1 162651 objectId:309 +HGNC:8040 NTSR2 neurotensin receptor 2 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 NTR2 Neurotensin receptors 244 2000-01-20 2014-11-19 23620 ENSG00000169006 OTTHUMG00000119083 uc002rbq.5 Y10148 XM_017003738 CCDS1681 O95665 "8647296|9851594" MGI:108018 RGD:70962 NTSR2 605538 objectId:310 +HGNC:14311 NUAK1 NUAK family kinase 1 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "ARK5|KIAA0537|NuaK1" AMP-activated protein kinase family member 5 NUAK family, SNF1-like kinase, 1 2005-06-08 2016-03-10 2016-03-10 9891 ENSG00000074590 OTTHUMG00000169763 uc001tlj.2 AB011109 NM_014840 CCDS31892 O60285 "12409306|13679856" MGI:1925226 RGD:1309956 NUAK1 608130 objectId:2129 +HGNC:29558 NUAK2 NUAK family kinase 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "SNARK|FLJ90349" SNF1/AMP activated protein kinase NUAK family, SNF1-like kinase, 2 2005-06-08 2016-03-10 2016-03-10 81788 ENSG00000163545 OTTHUMG00000037196 uc001hce.5 AK074830 NM_030952 CCDS1453 Q9H093 11230166 MGI:1921387 RGD:1359167 NUAK2 608131 objectId:2130 +HGNC:17623 NUB1 negative regulator of ubiquitin like proteins 1 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "BS4|NYREN18|NUB1L" NEDD8 ultimate buster-1 2006-07-27 2016-06-07 2016-10-05 51667 ENSG00000013374 OTTHUMG00000157365 uc003wjw.6 AF300717 NM_016118 "CCDS47751|CCDS59089" Q9Y5A7 "10508479|11259415" MGI:1889001 RGD:1359489 NUB1 607981 +HGNC:8041 NUBP1 nucleotide binding protein 1 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 NBP35 NBP1 "nucleotide binding protein 1 (E.coli MinD like)|nucleotide binding protein 1 (MinD homolog, E. coli)" Cytosolic iron-sulfur assembly components 1028 1998-07-03 2011-05-19 2014-11-18 4682 ENSG00000103274 OTTHUMG00000129751 uc002daa.3 U01833 NM_002484 "CCDS10543|CCDS61839" P53384 7926816 MGI:1347073 RGD:1310514 NUBP1 600280 +HGNC:8042 NUBP2 nucleotide binding protein 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 CFD1 "nucleotide binding protein 2 (E.coli MinD like)|nucleotide binding protein 2 (MinD homolog, E. coli)" Cytosolic iron-sulfur assembly components 1028 1999-05-25 2011-05-19 2014-11-18 10101 ENSG00000095906 OTTHUMG00000128639 uc002cmw.6 AF118394 NM_012225 "CCDS10445|CCDS66898" Q9Y5Y2 10486206 MGI:1347072 RGD:1305113 NUBP2 610779 +HGNC:20278 NUBPL nucleotide binding protein like protein-coding gene gene with protein product Approved 14q12 14q12 "FLJ12660|IND1|huInd1" iron-sulfur protein required for NADH dehydrogenase C14orf127 "chromosome 14 open reading frame 127|nucleotide binding protein-like" Mitochondrial respiratory chain complex assembly factors 645 2003-01-17 2005-01-07 2016-03-07 2016-03-07 80224 ENSG00000151413 OTTHUMG00000170521 uc001wrk.5 AK022722 NM_025152 CCDS41940 Q8TB37 MGI:1924076 RGD:1307232 NUBPL 613621 244371 +HGNC:8043 NUCB1 nucleobindin 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "NUC|Calnuc" EF-hand domain containing 863 1996-09-13 2014-11-19 4924 ENSG00000104805 OTTHUMG00000152514 uc002plb.5 BC002356 NM_006184 CCDS12740 Q02818 8661046 MGI:97388 RGD:620030 NUCB1 601323 objectId:2871 +HGNC:40419 NUCB1-AS1 NUCB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.33 19q13.33 NUCB1 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100874085 ENSG00000235191 OTTHUMG00000152526 uc061axj.1 NR_046633 +HGNC:8044 NUCB2 nucleobindin 2 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 NEFA EF-hand domain containing 863 1996-09-13 2014-11-19 4925 ENSG00000070081 OTTHUMG00000166050 uc001mmw.4 AF052642 NM_005013 "CCDS41623|CCDS81556" P80303 7811391 MGI:1858179 RGD:620888 NUCB2 608020 +HGNC:29923 NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 NUCKS 2005-07-11 2016-06-08 2016-06-08 64710 ENSG00000069275 OTTHUMG00000035996 uc001hdb.4 NM_022731 CCDS30987 Q9H1E3 11298763 MGI:1934811 RGD:620993 NUCKS1 611912 +HGNC:51943 NUCKS1P1 nuclear casein kinase and cyclin dependent kinase substrate 1 pseudogene 1 pseudogene pseudogene Approved 1q42.13 01q42.13 2015-10-07 2016-06-08 2016-06-08 100130466 ENSG00000232864 OTTHUMG00000037613 PGOHUM00000296078 +HGNC:8045 NUDC nuclear distribution C, dynein complex regulator protein-coding gene gene with protein product Approved 1p36.11 01p36.11 NudC "nuclear distribution gene C homolog (A. nidulans)|nuclear distribution C homolog (A. nidulans)|nudC nuclear distribution protein" NudC family 1285 1999-01-22 2016-06-13 2016-06-13 10726 ENSG00000090273 OTTHUMG00000004226 uc001bng.3 XM_017000094 CCDS292 Q9Y266 MGI:106014 RGD:3215 NUDC 610325 +HGNC:24306 NUDCD1 NudC domain containing 1 protein-coding gene gene with protein product Approved 8q23.1 08q23.1 "CML66|FLJ14991" NudC family 1285 2005-02-07 2016-10-05 84955 ENSG00000120526 OTTHUMG00000164931 uc003ynb.5 AF283302 NM_032869 "CCDS6312|CCDS47910" Q96RS6 11416219 MGI:1914679 RGD:1310624 NUDCD1 606109 +HGNC:30535 NUDCD2 NudC domain containing 2 protein-coding gene gene with protein product Approved 5q34 05q34 "DKFZp686E10109|NudCL2" NudC family 1285 2005-02-07 2016-06-13 134492 ENSG00000170584 OTTHUMG00000130378 uc003lze.4 BX538290 NM_145266 CCDS4361 Q8WVJ2 20133715 MGI:1277103 RGD:1307203 NUDCD2 +HGNC:22208 NUDCD3 NudC domain containing 3 protein-coding gene gene with protein product Approved 7p13 07p13 "KIAA1068|NudCL" NudC family 1285 2005-02-07 2016-10-05 23386 ENSG00000015676 OTTHUMG00000129174 uc003tkz.4 BC003691 NM_015332 CCDS5490 Q8IVD9 16754861 MGI:2144158 RGD:1642416 NUDCD3 610296 +HGNC:8046 NUDCP1 nuclear distribution C pseudogene 1 pseudogene pseudogene Approved 2q23.3 02q23.3 nuclear distribution gene C (A.nidulans) homolog, pseudogene 1 1999-01-22 2016-06-13 2016-06-13 10790 AF125466 NG_001230 10453739 +HGNC:8047 NUDCP2 nuclear distribution C pseudogene 2 pseudogene pseudogene Approved 2q31 02q31 nuclear distribution gene C (A.nidulans) homolog, pseudogene 2 1999-01-22 2016-06-13 2016-06-13 10789 AF125467 NG_001229 10453739 +HGNC:8048 NUDT1 nudix hydrolase 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "mutT human homolog 1|nudix motif 1|8-oxo-7,8-dihydrodeoxyguanosine triphosphatase|8-oxo-dGTPase|7,8-dihydro-8-oxoguanine triphosphatase|8-oxo-7,8-dihydroguanosine triphosphatase|nucleoside diphosphate-linked moiety X-type motif 1" MTH1 nudix (nucleoside diphosphate linked moiety X)-type motif 1 Nudix hydrolase family 667 1994-09-29 2015-11-13 2016-10-05 4521 ENSG00000106268 OTTHUMG00000023072 uc003slr.1 D16581 NM_002452 "CCDS5329|CCDS5330" P36639 "7713494|8226881" MGI:109280 RGD:621080 NUDT1 600312 +HGNC:8049 NUDT2 nudix hydrolase 2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "Ap4A hydrolase 1|Ap4Aase|bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)|diadenosine tetraphosphatase|diadenosine 5',5''-P1,P4-tetraphosphate pyrophosphohydrolase" APAH1 nudix (nucleoside diphosphate linked moiety X)-type motif 2 Nudix hydrolase family 667 1997-04-25 2015-11-13 2016-10-05 318 ENSG00000164978 OTTHUMG00000019817 uc003zub.3 U30313 NM_001161 CCDS6552 P50583 "7487923|9479504" MGI:1913651 RGD:1303023 NUDT2 602852 +HGNC:8050 NUDT3 nudix hydrolase 3 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 DIPP nudix (nucleoside diphosphate linked moiety X)-type motif 3 Nudix hydrolase family 667 1999-09-03 2015-11-13 2016-10-05 11165 ENSG00000272325 OTTHUMG00000014545 uc003ojl.4 AF062530 NM_006703 CCDS4791 O95989 9822604 MGI:1928484 RGD:1310183 NUDT3 609228 +HGNC:8051 NUDT4 nudix hydrolase 4 protein-coding gene gene with protein product Approved 12q22 12q22 "DIPP2|HDCMB47P|KIAA0487|DIPP2alpha|DIPP2beta" diphosphoinositol polyphosphate phosphohydrolase type 2 nudix (nucleoside diphosphate linked moiety X)-type motif 4 Nudix hydrolase family 667 1999-09-03 2015-11-13 2016-10-05 11163 ENSG00000173598 OTTHUMG00000170155 uc010sup.3 AF067803 NM_019094 "CCDS9044|CCDS44952|CCDS73504|CCDS76584" Q9NZJ9 "10777568|11376937" MGI:1918457 RGD:621355 NUDT4 609229 +HGNC:18012 NUDT4P1 nudix hydrolase 4 pseudogene 1 pseudogene pseudogene Approved 1q21.2 01q21.2 nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1 2002-02-13 2015-11-13 2016-10-05 440672 ENSG00000177144 OTTHUMG00000188673 AF311215 NR_002212 11376937 PGOHUM00000244201 +HGNC:18013 NUDT4P2 nudix hydrolase 4 pseudogene 2 pseudogene pseudogene Approved 1q21.1 01q21.1 nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 2 2002-02-13 2015-11-13 2015-11-13 170688 ENSG00000271121 OTTHUMG00000188666 AF311216 NR_104005 11376937 +HGNC:8052 NUDT5 nudix hydrolase 5 protein-coding gene gene with protein product Approved 10p14 10p14 "hYSAH1|YSA1H" nudix (nucleoside diphosphate linked moiety X)-type motif 5 Nudix hydrolase family 667 1999-09-03 2015-11-13 2015-11-13 11164 ENSG00000165609 OTTHUMG00000017682 uc001ilj.4 AF155832 NM_001321647 CCDS7089 Q9UKK9 10373642 MGI:1858232 RGD:1359284 NUDT5 609230 +HGNC:8053 NUDT6 nudix hydrolase 6 protein-coding gene gene with protein product Approved 4q28.1 04q28.1 "gfg-1|gfg|FGF2AS|FGF-AS" nudix (nucleoside diphosphate linked moiety X)-type motif 6 Nudix hydrolase family 667 1999-09-03 2015-11-13 2016-10-05 11162 ENSG00000170917 OTTHUMG00000039507 uc003iew.3 AF019632 NM_007083 "CCDS3729|CCDS43268" P53370 "7984147|10022609" MGI:2387618 RGD:621356 NUDT6 606261 +HGNC:8054 NUDT7 nudix hydrolase 7 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 nudix (nucleoside diphosphate linked moiety X)-type motif 7 Nudix hydrolase family 667 2000-03-29 2015-11-13 2015-11-13 283927 ENSG00000140876 OTTHUMG00000176808 uc010chd.4 AA227330 XM_011523032 "CCDS42195|CCDS58480|CCDS58479|CCDS73916" P0C024 11415433 MGI:1914778 RGD:1306719 NUDT7 609231 +HGNC:8055 NUDT8 nudix hydrolase 8 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 FLJ41567 nudix (nucleoside diphosphate linked moiety X)-type motif 8 Nudix hydrolase family 667 2000-03-29 2015-11-13 2015-11-13 254552 ENSG00000167799 OTTHUMG00000167292 uc001omn.4 AI743601 NM_181843 "CCDS8174|CCDS58151" Q8WV74 11415433 MGI:1913637 RGD:1309040 NUDT8 +HGNC:8056 NUDT9 nudix hydrolase 9 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 MGC3037 nudix (nucleoside diphosphate linked moiety X)-type motif 9 Nudix hydrolase family 667 2000-05-02 2015-11-13 2015-11-13 53343 ENSG00000170502 OTTHUMG00000130591 uc003hqq.4 AY026252 XM_011532032 "CCDS3620|CCDS3621" Q9BW91 "11385575|12427752" MGI:1921417 RGD:1359522 NUDT9 606022 +HGNC:28523 NUDT9P1 nudix hydrolase 9 pseudogene 1 pseudogene pseudogene Approved 10q23.32 10q23.32 "MGC34007|bA56M3.1" C10orf98 "chromosome 10 open reading frame 98|nudix (nucleoside diphosphate linked moiety X)-type motif 9 pseudogene 1" 2004-04-16 2005-07-21 2015-11-13 2016-08-17 119369 ENSG00000234043 OTTHUMG00000018739 BC029544 NR_002779 12477932 PGOHUM00000289948 +HGNC:17621 NUDT10 nudix hydrolase 10 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "DIPP3a|hDIPP3alpha" nudix (nucleoside diphosphate linked moiety X)-type motif 10 Nudix hydrolase family 667 2002-02-13 2015-11-13 2016-10-05 170685 ENSG00000122824 OTTHUMG00000021530 uc004dph.3 AF469196 NM_153183 CCDS35278 Q8NFP7 12105228 "MGI:2147931|MGI:1930957" NUDT10 300527 +HGNC:18011 NUDT11 nudix hydrolase 11 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "DIPP3b|FLJ10628|hDIPP3beta" nudix (nucleoside diphosphate linked moiety X)-type motif 11 Nudix hydrolase family 667 2002-02-13 2015-11-13 2016-10-05 55190 ENSG00000196368 OTTHUMG00000021531 uc010njt.4 AK001490 NM_018159 CCDS43952 Q96G61 12105228 "MGI:2147931|MGI:1930957" RGD:1594183 NUDT11 300528 +HGNC:18826 NUDT12 nudix hydrolase 12 protein-coding gene gene with protein product Approved 5q21.2 05q21.2 DKFZP761I172 nucleoside diphosphate linked moiety X-type motif 12 nudix (nucleoside diphosphate linked moiety X)-type motif 12 "Ankyrin repeat domain containing|Nudix hydrolase family" "403|667" 2002-07-22 2015-11-13 2016-10-05 83594 ENSG00000112874 OTTHUMG00000128739 uc003koi.4 AL136592 NM_031438 "CCDS4096|CCDS75284" Q9BQG2 11230166 MGI:1915243 RGD:1310902 NUDT12 609232 +HGNC:18827 NUDT13 nudix hydrolase 13 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 DKFZp586P2219 nudix (nucleoside diphosphate linked moiety X)-type motif 13 Nudix hydrolase family 667 2002-07-22 2015-11-13 2016-10-05 25961 ENSG00000166321 OTTHUMG00000018453 uc001jtj.5 AL050114 NM_015901 "CCDS31220|CCDS60551|CCDS60552|CCDS60553|CCDS73148" Q86X67 15164054 MGI:1914975 RGD:1592767 NUDT13 609233 +HGNC:20141 NUDT14 nudix hydrolase 14 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 UGPP uridine diphosphate glucose pyrophosphatase nudix (nucleoside diphosphate linked moiety X)-type motif 14 Nudix hydrolase family 667 2002-12-18 2015-11-13 2015-11-13 256281 ENSG00000183828 OTTHUMG00000170372 uc010tyn.4 AB087802 NM_177533 CCDS10000 O95848 12429023 MGI:1913424 RGD:1310583 NUDT14 609219 +HGNC:23063 NUDT15 nudix hydrolase 15 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "MTH2|FLJ10956" nudix (nucleoside diphosphate linked moiety X)-type motif 15 Nudix hydrolase family 667 2003-12-22 2015-11-13 2016-10-05 55270 ENSG00000136159 OTTHUMG00000016890 uc001vbw.2 NM_018283 CCDS9407 Q9NV35 12767940 MGI:2443366 RGD:1308292 NUDT15 615792 422883 +HGNC:17266 NUDT15P1 nudix hydrolase 15 pseudogene 1 pseudogene pseudogene Approved 8q12.1 08q12.1 nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene 1 2005-07-21 2015-11-13 2015-11-13 574532 NG_031937 +HGNC:20784 NUDT15P2 nudix hydrolase 15 pseudogene 2 pseudogene pseudogene Approved 17q11.2 17q11.2 nudix (nucleoside diphosphate linked moiety X)-type motif 15 pseudogene 2 2005-07-21 2015-11-13 2015-11-13 574533 NG_032793 +HGNC:26442 NUDT16 nudix hydrolase 16 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 FLJ31265 nudix (nucleoside diphosphate linked moiety X)-type motif 16 Nudix hydrolase family 667 2005-01-25 2015-11-13 2016-04-25 131870 ENSG00000198585 OTTHUMG00000159623 uc003eog.3 AK055827 NM_152395 "CCDS3070|CCDS54640|CCDS54641" Q96DE0 12477932 MGI:1922936 RGD:1311387 NUDT16 +HGNC:28154 NUDT16L1 nudix hydrolase 16 like 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 SDOS syndesmos nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1 Nudix hydrolase family 667 2005-01-25 2015-11-13 2015-11-13 84309 ENSG00000168101 OTTHUMG00000129471 uc002cxe.4 BC006223 NM_032349 "CCDS10519|CCDS59257" Q9BRJ7 "11805099|18820299" MGI:1914161 RGD:1561451 NUDT16L1 +HGNC:27189 NUDT16P1 nudix hydrolase 16 pseudogene 1 pseudogene pseudogene Approved 3q22.1 03q22.1 FLJ20525 NUDT16P "nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene|nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1" 2006-04-05 2010-03-02 2015-11-13 2015-11-13 152195 ENSG00000246082 OTTHUMG00000159755 AK000532 NM_194289 12477932 MGI:1920782 PGOHUM00000250305 +HGNC:26618 NUDT17 nudix hydrolase 17 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 FLJ34433 nucleoside diphosphate-linked moiety X motif 17 nudix (nucleoside diphosphate linked moiety X)-type motif 17 Nudix hydrolase family 667 2005-02-02 2015-11-13 2016-02-23 200035 ENSG00000186364 OTTHUMG00000013752 uc001eoe.4 BC046352 XM_496395 CCDS72865 P0C025 12477932 MGI:1925623 RGD:1565469 NUDT17 +HGNC:26194 NUDT18 nudix hydrolase 18 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "FLJ22494|MTH3" mutT human homolog 3 nudix (nucleoside diphosphate linked moiety X)-type motif 18 Nudix hydrolase family 667 2005-07-07 2015-11-13 2015-11-13 79873 ENSG00000275074 OTTHUMG00000163774 uc033beu.2 NM_024815 CCDS75706 Q6ZVK8 22556419 MGI:2385853 RGD:1311802 NUDT18 615791 +HGNC:32036 NUDT19 nudix hydrolase 19 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 RP2 nudix (nucleoside diphosphate linked moiety X)-type motif 19 Nudix hydrolase family 667 2005-07-07 2015-11-13 2015-11-13 390916 ENSG00000213965 OTTHUMG00000180228 uc010edf.3 XM_372723 CCDS42543 A8MXV4 MGI:94203 RGD:1302935 NUDT19 +HGNC:43585 NUDT19P1 nudix hydrolase 19 pseudogene 1 pseudogene pseudogene Approved Xq24 Xq24 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 1 2011-11-16 2015-11-13 2015-11-13 100126008 NG_006970 PGOHUM00000241515 +HGNC:43586 NUDT19P2 nudix hydrolase 19 pseudogene 2 pseudogene pseudogene Approved Xq22.1 Xq22.1 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 2 2011-11-16 2015-11-13 2015-11-13 100422458 NG_026867 PGOHUM00000241928 +HGNC:43587 NUDT19P3 nudix hydrolase 19 pseudogene 3 pseudogene pseudogene Approved 6q21 06q21 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 3 2011-11-16 2015-11-13 2015-11-13 100422450 ENSG00000216723 OTTHUMG00000015410 NG_025857 PGOHUM00000243333 +HGNC:43588 NUDT19P4 nudix hydrolase 19 pseudogene 4 pseudogene pseudogene Approved 6p21.1 06p21.1 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 4 2011-11-16 2015-11-13 2015-11-13 100422452 ENSG00000270900 OTTHUMG00000184541 NG_025936 PGOHUM00000243628 +HGNC:43589 NUDT19P5 nudix hydrolase 19 pseudogene 5 pseudogene pseudogene Approved 4q32.1 04q32.1 nudix (nucleoside diphosphate linked moiety X)-type motif 19 pseudogene 5 2011-11-16 2015-11-13 2015-11-13 100422445 ENSG00000251073 OTTHUMG00000162011 NG_025267 PGOHUM00000246116 +HGNC:13870 NUDT21 nudix hydrolase 21 protein-coding gene gene with protein product Approved 16q13 16q13 CFIM25 cleavage factor Im complex 25 kDa subunit CPSF5 "cleavage and polyadenylation specific factor 5, 25 kDa|cleavage and polyadenylation specific factor 5, 25 kD subunit|nudix (nucleoside diphosphate linked moiety X)-type motif 21" Nudix hydrolase family 667 2001-02-06 2005-07-11 2015-11-13 2016-10-05 11051 ENSG00000167005 OTTHUMG00000133240 uc002eja.4 AJ001810 NM_007006 CCDS10760 O43809 9659921 MGI:1915469 RGD:1305766 NUDT21 604978 +HGNC:39461 NUDT21P1 nudix hydrolase 21 pseudogene 1 pseudogene pseudogene Approved 13q31.2 13q31.2 nudix (nucleoside diphosphate linked moiety X)-type motif 21 pseudogene 1 2011-01-17 2015-11-13 2015-11-13 100422467 NG_024870 PGOHUM00000248453 +HGNC:28189 NUDT22 nudix hydrolase 22 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 MGC13045 nudix (nucleoside diphosphate linked moiety X)-type motif 22 Nudix hydrolase family 667 2005-07-21 2015-11-13 2015-11-13 84304 ENSG00000149761 OTTHUMG00000167791 uc001nyp.6 BC006129 NM_032344 "CCDS8061|CCDS44640" Q9BRQ3 12477932 MGI:1915573 RGD:735224 NUDT22 +HGNC:14621 NUF2 NUF2, NDC80 kinetochore complex component protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "NUF2R|CT106" cancer/testis antigen 106 CDCA1 "cell division cycle associated 1|NUF2, NDC80 kinetochore complex component, homolog (S. cerevisiae)" 2002-04-03 2006-11-07 2013-07-03 2014-11-19 83540 ENSG00000143228 OTTHUMG00000034275 uc001gcr.2 BG354574 NM_145697 CCDS1245 Q9BZD4 "11266451|11685532" MGI:1914227 RGD:1307952 NUF2 611772 +HGNC:8057 NUFIP1 NUFIP1, FMR1 interacting protein 1 protein-coding gene gene with protein product Approved 13q14.12 13q14.12 NUFIP nuclear fragile X mental retardation protein interacting protein 1 1999-12-14 2016-05-04 2016-10-05 26747 ENSG00000083635 OTTHUMG00000016842 uc001uzp.3 AF159548 NM_012345 CCDS9393 Q9UHK0 "10556305|10894927" MGI:1351474 RGD:1359440 NUFIP1 604354 +HGNC:8058 NUFIP1P NUFIP1P, FMR1 interacting protein 1 pseudogene pseudogene pseudogene Approved 6q12 06q12 nuclear fragile X mental retardation protein interacting protein 1 pseudogene 2000-03-06 2016-05-04 2016-05-04 89761 ENSG00000218890 OTTHUMG00000014977 NG_001030 10894927 +HGNC:17634 NUFIP2 NUFIP2, FMR1 interacting protein 2 protein-coding gene gene with protein product Approved 17q11.1 17q11.1 "KIAA1321|MGC117262|PIG1|182-FIP|FIP-82|82-FIP" nuclear fragile X mental retardation protein interacting protein 2 2006-01-26 2016-05-04 2016-05-04 57532 ENSG00000108256 OTTHUMG00000179547 uc002hdy.5 AB037742 NM_020772 CCDS32600 Q7Z417 "12837692|16407062" MGI:1915814 RGD:1596719 NUFIP2 609356 +HGNC:33550 NUGGC nuclear GTPase, germinal center associated protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "HMFN0672|SLIP-GC" speckled-like pattern in the germinal center C8orf80 chromosome 8 open reading frame 80 2007-07-26 2012-06-07 2012-06-07 2014-11-19 389643 ENSG00000189233 OTTHUMG00000155970 uc003xgm.4 AB075870 NM_001010906 CCDS47833 Q68CJ6 19734146 MGI:2685446 RGD:1562099 +HGNC:8059 NUMA1 nuclear mitotic apparatus protein 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 1993-03-05 2015-08-17 4926 ENSG00000137497 OTTHUMG00000167697 uc001orl.3 Z11584 XM_011545056 "CCDS31633|CCDS66156" Q14980 8406455 MGI:2443665 RGD:1308777 NUMA1 164009 391994 +HGNC:8060 NUMB NUMB, endocytic adaptor protein protein-coding gene gene with protein product Approved 14q24.3 14q24.3 C14orf41 "numb (Drosophila) homolog|chromosome 14 open reading frame 41|numb homolog (Drosophila)" 1999-03-12 2016-04-28 2016-04-28 8650 ENSG00000133961 OTTHUMG00000171436 uc001xny.2 L40393 NM_003744 "CCDS9814|CCDS32115|CCDS32116|CCDS55927" P49757 11121447 MGI:107423 RGD:620107 NUMB 603728 +HGNC:8061 NUMBL NUMB like, endocytic adaptor protein protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "NUMB-R|CTG3a|CAG3A|TNRC23|NUMBR|NUMBLIKE" numb (Drosophila) homolog-like Trinucleotide repeat containing 775 1999-03-12 2016-04-28 2016-04-28 9253 ENSG00000105245 OTTHUMG00000182627 uc002oon.5 AF015401 NM_004756 "CCDS12561|CCDS77298" Q9Y6R0 "9225980|9303539" MGI:894702 RGD:1307579 NUMBL 604018 +HGNC:29797 NUP35 nucleoporin 35 protein-coding gene gene with protein product Approved 2q32.1 02q32.1 MP44 mitotic phosphoprotein 44 nucleoporin 35kDa Nucleoporins 1051 2004-06-28 2016-06-01 2016-10-05 129401 ENSG00000163002 OTTHUMG00000132621 uc002upf.5 AF514993 NM_138285 "CCDS2290|CCDS74614" Q8NFH5 MGI:1916732 RGD:1303069 NUP35 608140 +HGNC:52370 NUP35P1 nucleoporin 35 pseudogene 1 pseudogene pseudogene Approved 10p12.2 10p12.2 2016-08-16 2016-08-16 100419066 ENSG00000223928 OTTHUMG00000017820 NG_025477 PGOHUM00000290071 +HGNC:29929 NUP37 nucleoporin 37 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 "MGC5585|FLJ22618" nucleoporin 37kDa "WD repeat domain containing|Nucleoporins" "362|1051" 2004-03-19 2016-06-01 2016-06-01 79023 ENSG00000075188 OTTHUMG00000170478 uc001tjc.4 AF514994 NM_024057 CCDS9089 Q8NFH4 12196509 MGI:1919964 RGD:1307774 NUP37 609264 +HGNC:21182 NUP43 nucleoporin 43 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "bA350J20.1|FLJ13287" nucleoporin 43kDa "WD repeat domain containing|Nucleoporins" "362|1051" 2003-05-22 2016-06-01 2016-06-01 348995 ENSG00000120253 OTTHUMG00000015795 uc003qmz.5 AF514997 NM_198887 CCDS5218 Q8NFH3 12196509 MGI:1917162 RGD:1596513 NUP43 608141 +HGNC:8065 NUP50 nucleoporin 50 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 NPAP60L nucleoporin 50kDa Nucleoporins 1051 2000-02-16 2016-06-01 2016-10-05 10762 ENSG00000093000 OTTHUMG00000151265 uc003bfr.4 AF107840 XM_017028537 "CCDS14062|CCDS14063" Q9UKX7 10449902 MGI:1351502 RGD:3191 NUP50 604646 +HGNC:50502 NUP50-AS1 NUP50 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 2014-05-12 2014-05-12 100506714 ENSG00000226328 OTTHUMG00000151264 NR_038956 +HGNC:20025 NUP50P1 nucleoporin 50 pseudogene 1 pseudogene pseudogene Approved 14q23.3 14q23.3 NUP50P nucleoporin 50 pseudogene 2003-01-13 2006-09-21 2006-09-21 2009-09-22 145375 NG_002384 +HGNC:29928 NUP50P2 nucleoporin 50 pseudogene 2 pseudogene pseudogene Approved 6p22 06p22 2006-09-21 2006-09-21 266785 NG_002388 +HGNC:29927 NUP50P3 nucleoporin 50 pseudogene 3 pseudogene pseudogene Approved 5p14 05p14 2008-03-07 2008-03-07 266786 NG_002389 +HGNC:17359 NUP54 nucleoporin 54 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 nucleoporin 54kDa Nucleoporins 1051 2001-12-12 2016-06-01 2016-06-01 53371 ENSG00000138750 OTTHUMG00000130098 uc003hjs.5 AF157322 XM_011532033 "CCDS3576|CCDS63998" Q7Z3B4 8707840 MGI:1920460 RGD:619926 NUP54 607607 +HGNC:20261 NUP58 nucleoporin 58 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 "KIAA0410|NUP45" NUPL1 "nucleoporin like 1|nucleoporin 58kDa" Nucleoporins 1051 2003-01-16 2015-08-10 2016-06-01 2016-10-05 9818 ENSG00000139496 OTTHUMG00000016608 AB007870 XM_011535329 "CCDS9314|CCDS31949" Q9BVL2 9455477 MGI:1919094 RGD:631334 607615 +HGNC:44052 NUP58P1 nucleoporin 58 pseudogene 1 pseudogene pseudogene Approved 4q28.1 04q28.1 NUPL1P1 "nucleoporin like 1 pseudogene 1|nucleoporin 58kDa pseudogene 1" 2012-05-30 2015-08-10 2016-06-01 2016-06-01 100289295 ENSG00000251436 OTTHUMG00000161150 NG_022035 PGOHUM00000245692 +HGNC:8066 NUP62 nucleoporin 62 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "p62|DKFZp547L134|IBSN|SNDI|MGC841|FLJ20822|FLJ43869" nuclear pore glycoprotein p62 nucleoporin 62kDa Nucleoporins 1051 2000-01-06 2016-06-01 2016-06-01 23636 ENSG00000213024 OTTHUMG00000183077 uc002pqz.5 X58521 NM_153719 CCDS12788 P37198 1915414 MGI:1351500 RGD:619938 NUP62 605815 138467 +HGNC:25960 NUP62CL nucleoporin 62 C-terminal like protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 FLJ20130 nucleoporin 62kDa C-terminal like 2006-07-11 2016-06-01 2016-06-01 54830 ENSG00000198088 OTTHUMG00000022159 uc004ena.4 AK000137 NM_017681 CCDS14527 Q9H1M0 12477932 MGI:2685565 RGD:1564353 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NUP62CL NUP62CL +HGNC:8734 NUP85 nucleoporin 85 protein-coding gene gene with protein product Approved 17q25 17q25 "NUP75|FLJ12549" nucleoporin 85kDa Nucleoporins 1051 1995-04-27 2005-11-03 2016-04-01 2016-04-01 79902 ENSG00000125450 OTTHUMG00000179482 uc002jng.2 AF514995 NM_024844 "CCDS32730|CCDS82202" Q9BW27 8124707 MGI:3046173 RGD:1311942 NUP85 170285 +HGNC:8067 NUP88 nucleoporin 88 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 MGC8530 "nucleoporin 88kD|nucleoporin 88kDa" Nucleoporins 1051 1998-05-01 2016-04-01 2016-10-05 4927 ENSG00000108559 OTTHUMG00000099453 uc002gbo.3 Y08612 NM_002532 CCDS11070 Q99567 9049309 MGI:104900 RGD:620182 NUP88 602552 +HGNC:28958 NUP93 nucleoporin 93 protein-coding gene gene with protein product Approved 16q13 16q13 KIAA0095 nucleoporin 93kDa Nucleoporins 1051 2004-03-19 2016-06-01 2016-06-01 9688 ENSG00000102900 OTTHUMG00000133278 uc002eka.4 D42085 NM_014669 "CCDS10769|CCDS55996" Q8N1F7 "9348540|9531546" MGI:1919055 RGD:1311525 NUP93 614351 456826 +HGNC:8068 NUP98 nucleoporin 98 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 NUP96 nucleoporin 98kDa Nucleoporins 1051 1997-07-04 2016-06-01 2016-10-05 4928 ENSG00000110713 OTTHUMG00000011846 uc001lyh.3 "AF071076|AF231130|BC012906|BG773331" NM_016320 "CCDS7746|CCDS31347|CCDS41605|CCDS41606" P52948 9166830 MGI:109404 RGD:71033 NUP98 601021 S59.001 +HGNC:29914 NUP107 nucleoporin 107 protein-coding gene gene with protein product Approved 12q15 12q15 NUP84 nucleoporin 107kDa Nucleoporins 1051 2004-03-19 2016-06-01 2016-10-05 57122 ENSG00000111581 OTTHUMG00000169265 uc001suf.4 AK055629 NM_020401 "CCDS8985|CCDS81712" P57740 "12552102|12705868" MGI:2143854 RGD:621160 NUP107 607617 442980 +HGNC:18016 NUP133 nucleoporin 133 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 FLJ10814 nucleoporin 133kDa "Minor histocompatibility antigens|Nucleoporins" "870|1051" 2002-01-18 2016-06-01 2016-06-01 55746 ENSG00000069248 OTTHUMG00000039462 uc001htn.4 NM_018230 CCDS1579 Q8WUM0 11684705 MGI:2442620 RGD:1307827 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=NUP133 NUP133 607613 +HGNC:8062 NUP153 nucleoporin 153 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 HNUP153 nucleoporin 153kDa "Zinc fingers RANBP2-type |Nucleoporins" "89|1051" 1999-05-11 2016-06-01 2016-06-01 9972 ENSG00000124789 OTTHUMG00000014312 uc011dje.2 Z25535 XM_006715290 "CCDS4541|CCDS64359|CCDS75407" P49790 8110839 MGI:2385621 RGD:3216 NUP153 603948 +HGNC:8063 NUP155 nucleoporin 155 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "KIAA0791|N155" nucleoporin 155kDa Nucleoporins 1051 1998-10-21 2016-06-01 2016-10-05 9631 ENSG00000113569 OTTHUMG00000090803 uc003jku.3 AJ007558 "NM_153485|NM_004298" "CCDS3921|CCDS43310|CCDS64142" O75694 10191094 MGI:2181182 RGD:621199 NUP155 606694 183928 +HGNC:18017 NUP160 nucleoporin 160 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "KIAA0197|FLJ22583" nucleoporin 160kDa Nucleoporins 1051 2002-01-18 2016-06-01 2016-10-05 23279 ENSG00000030066 OTTHUMG00000166534 uc001ngm.4 D83781 NM_015231 "CCDS31484|CCDS81567" Q12769 11684705 MGI:1926227 RGD:1311052 NUP160 607614 +HGNC:17859 NUP188 nucleoporin 188 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 KIAA0169 "KIAA0169|nucleoporin 188kDa" Nucleoporins 1051 2003-11-27 2004-03-24 2016-06-01 2016-10-05 23511 ENSG00000095319 OTTHUMG00000020768 uc004bws.3 D79991 NM_015354 CCDS35156 Q5SRE5 11029043 MGI:2446190 RGD:1306022 NUP188 615587 +HGNC:18658 NUP205 nucleoporin 205 protein-coding gene gene with protein product Approved 7q33 07q33 KIAA0225 C7orf14 "chromosome 7 open reading frame 14|nucleoporin 205kDa" Nucleoporins 1051 2002-05-29 2004-01-07 2016-06-01 2016-10-05 23165 ENSG00000155561 OTTHUMG00000155497 uc003vsw.4 D86978 XM_005250235 CCDS34759 Q92621 "9039502|9348540" MGI:2141625 RGD:1309413 NUP205 614352 456828 +HGNC:30052 NUP210 nucleoporin 210 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "GP210|POM210|FLJ22389|KIAA0906" nucleoporin 210kDa Nucleoporins 1051 2004-11-17 2016-06-01 2016-10-05 23225 ENSG00000132182 OTTHUMG00000157268 uc003bxv.3 AB020713 NM_024923 CCDS33704 Q8TEM1 "2184032|7504063" MGI:1859555 RGD:69339 NUP210 607703 +HGNC:29915 NUP210L nucleoporin 210 like protein-coding gene gene with protein product Approved 1q21.3 01q21.3 nucleoporin 210kDa like 2004-11-17 2016-06-01 2016-06-01 91181 ENSG00000143552 OTTHUMG00000035852 uc001fdw.4 AK125924 NM_207308 "CCDS41399|CCDS53370" Q5VU65 MGI:1924845 RGD:1310250 NUP210L +HGNC:27399 NUP210P1 nucleoporin 210 pseudogene 1 pseudogene pseudogene Approved 3q21.3 03q21.3 C3orf46 "chromosome 3 open reading frame 46|nucleoporin 210kDa pseudogene 1" 2006-01-13 2011-08-16 2016-06-01 2016-10-05 255330 ENSG00000198284 OTTHUMG00000159577 BC042038 NR_034158 PGOHUM00000250302 +HGNC:42707 NUP210P2 nucleoporin 210 pseudogene 2 pseudogene pseudogene Approved 3p25.2 03p25.2 nucleoporin 210kDa pseudogene 2 2011-08-16 2016-06-01 2016-06-01 100129929 ENSG00000225275 OTTHUMG00000155295 NG_022238 PGOHUM00000237936 +HGNC:42712 NUP210P3 nucleoporin 210 pseudogene 3 pseudogene pseudogene Approved 3q21.3 03q21.3 nucleoporin 210kDa pseudogene 3 2011-08-16 2016-06-01 2016-06-01 100419070 ENSG00000248916 OTTHUMG00000159449 NG_025625 PGOHUM00000237765 +HGNC:8064 NUP214 nucleoporin 214 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "CAIN|CAN|D9S46E|N214" "nuclear pore complex protein Nup214|CAN protein, putative oncogene" "nucleoporin 214kD (CAIN)|nucleoporin 214kDa" Nucleoporins 1051 1999-05-05 2016-06-01 2016-10-05 8021 ENSG00000126883 OTTHUMG00000020816 uc004cag.4 X64228 NM_005085 "CCDS6940|CCDS83429|CCDS83430" P35658 "8108440|2370860" MGI:1095411 RGD:1304977 NUP214 114350 168420 +HGNC:17010 NUPL2 nucleoporin like 2 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "NLP_1|CG1|hCG1|H_RG271G13.9" nucleoporin-like protein 1 2003-08-07 2016-10-05 11097 ENSG00000136243 OTTHUMG00000096955 uc003svu.4 U97198 NM_007342 CCDS5379 O15504 "10358091|9450185" MGI:2387631 RGD:1560934 NUPL2 +HGNC:29990 NUPR1 nuclear protein 1, transcriptional regulator protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "COM1|p8" candidate of metastasis 1 2009-05-21 2015-11-13 2015-11-13 26471 ENSG00000176046 OTTHUMG00000131764 uc002dqe.2 AF069073 NM_012385 "CCDS10634|CCDS42137" O60356 "9405444|10493524|10092851" MGI:1891834 RGD:69363 NUPR1 614812 +HGNC:44164 NUPR2 nuclear protein 2, transcriptional regulator protein-coding gene gene with protein product Approved 7p11.2 07p11.2 NUPR1L nuclear protein, transcriptional regulator 1 like 2012-07-02 2015-11-13 2015-11-13 2015-11-13 389493 ENSG00000185290 OTTHUMG00000156224 uc003tsb.4 NM_001145712 CCDS59058 A6NF83 25899918 MGI:1923099 RGD:1560258 +HGNC:21042 NUS1 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "MGC7199|NgBR|TANGO14" "Nogo-B receptor|transport and golgi organization 14 homolog (Drosophila)" C6orf68 "chromosome 6 open reading frame 68|nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae)" 2003-05-08 2006-11-24 2015-06-26 2015-06-26 116150 ENSG00000153989 OTTHUMG00000015458 uc003pxw.4 BC013026 NM_138459 CCDS5118 Q96E22 25066056 MGI:1196365 RGD:1307879 NUS1 610463 +HGNC:38472 NUS1P1 NUS1 dehydrodolichyl diphosphate synthase subunit pseudogene 1 pseudogene pseudogene Approved Xp11.3 Xp11.3 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 1 2010-05-06 2015-06-26 2016-10-05 729148 ENSG00000235636 OTTHUMG00000021444 NG_023027 +HGNC:38473 NUS1P2 NUS1 dehydrodolichyl diphosphate synthase subunit pseudogene 2 pseudogene pseudogene Approved 13q12.12 13q12.12 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 2 2010-05-06 2015-06-26 2015-06-26 646208 ENSG00000234685 OTTHUMG00000016556 NG_008458 PGOHUM00000248526 +HGNC:30934 NUS1P3 NUS1 dehydrodolichyl diphosphate synthase subunit pseudogene 3 pseudogene pseudogene Approved 13q12.12 13q12.12 YDD19 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 3 2010-05-06 2015-06-26 2015-06-26 11049 ENSG00000234627 OTTHUMG00000016577 U82319 NG_006509 9294218 PGOHUM00000248533 +HGNC:38474 NUS1P4 NUS1 dehydrodolichyl diphosphate synthase subunit pseudogene 4 pseudogene pseudogene Approved 13q32.2 13q32.2 nuclear undecaprenyl pyrophosphate synthase 1 homolog (S. cerevisiae) pseudogene 4 2010-05-06 2015-06-26 2015-06-26 100130167 ENSG00000217686 OTTHUMG00000017251 NG_021964 PGOHUM00000248473 +HGNC:18538 NUSAP1 nucleolar and spindle associated protein 1 protein-coding gene gene with protein product Approved 15q14 15q14 "FLJ13421|LNP|ANKT|NuSAP1|SAPL|BM037|PRO0310p1|Q0310" 2003-11-05 2015-03-03 51203 ENSG00000137804 OTTHUMG00000172588 uc001zns.5 AF290612 NM_016359 "CCDS45234|CCDS45236|CCDS58356|CCDS58357|CCDS58358|CCDS73708" Q9BXS6 12963707 MGI:2675669 RGD:1305764 NUSAP1 612818 +HGNC:13722 NUTF2 nuclear transport factor 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "NTF2|PP15" 2002-08-30 2014-11-19 10204 ENSG00000102898 OTTHUMG00000137540 uc002eup.4 U43939 NM_001322040 CCDS10848 P61970 "7744965|3380696" MGI:1915301 RGD:1359213 NUTF2 605813 +HGNC:19934 NUTF2P2 nuclear transport factor 2 pseudogene 2 pseudogene pseudogene Approved 14q13.2 14q13.2 2003-01-13 2014-11-19 326613 ENSG00000258300 OTTHUMG00000170563 NG_002603 PGOHUM00000248136 +HGNC:50452 NUTF2P3 nuclear transport factor 2 pseudogene 3 pseudogene pseudogene Approved 9q21.2 09q21.2 2014-04-30 2014-04-30 106480298 ENSG00000228248 OTTHUMG00000020057 NG_044239 PGOHUM00000236651 +HGNC:50453 NUTF2P4 nuclear transport factor 2 pseudogene 4 pseudogene pseudogene Approved 1p13.2 01p13.2 2014-04-30 2014-04-30 128322 ENSG00000234790 OTTHUMG00000012021 PGOHUM00000244851 +HGNC:50454 NUTF2P5 nuclear transport factor 2 pseudogene 5 pseudogene pseudogene Approved 10p13 10p13 2014-04-30 2014-04-30 106481706 ENSG00000215227 OTTHUMG00000017705 NG_043265 PGOHUM00000238676 +HGNC:50455 NUTF2P6 nuclear transport factor 2 pseudogene 6 pseudogene pseudogene Approved 15q14 15q14 2014-04-30 2014-04-30 100131623 ENSG00000259710 OTTHUMG00000172343 NG_030233 PGOHUM00000247088 +HGNC:50458 NUTF2P7 nuclear transport factor 2 pseudogene 7 pseudogene pseudogene Approved Xq13.1 Xq13.1 2014-04-30 2014-04-30 100287868 ENSG00000229324 OTTHUMG00000021783 NG_030158 PGOHUM00000241377 +HGNC:50457 NUTF2P8 nuclear transport factor 2 pseudogene 8 pseudogene pseudogene Approved 2p24.1 02p24.1 2014-04-30 2014-04-30 100287183 ENSG00000270654 OTTHUMG00000184437 NG_021496 PGOHUM00000239989 +HGNC:29919 NUTM1 NUT midline carcinoma family member 1 protein-coding gene gene with protein product Approved 15q14 15q14 "NUT|DKFZp434O192|FAM22H" nuclear protein in testis C15orf55 chromosome 15 open reading frame 55 2007-11-21 2013-03-14 2016-04-28 2016-04-28 256646 ENSG00000184507 OTTHUMG00000172348 uc001zif.4 AF482429 NM_175741 "CCDS32190|CCDS61584|CCDS61585" Q86Y26 12543779 MGI:2661384 RGD:1564529 608963 449858 +HGNC:23438 NUTM2A NUT family member 2A protein-coding gene gene with protein product Approved 10q23.2 10q23.2 FAM22A family with sequence similarity 22, member A 2003-11-19 2013-03-14 2013-03-14 2015-09-04 728118 ENSG00000184923 OTTHUMG00000018670 uc001kek.4 NM_001099338 CCDS44452 Q8IVF1 MGI:2685652 RGD:1566043 NUTM2A 431093 +HGNC:45161 NUTM2A-AS1 NUTM2A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.2 10q23.2 FAM22A-AS1 FAM22A antisense RNA 1 2013-02-28 2013-03-14 2013-03-14 2013-03-14 728190 ENSG00000223482 OTTHUMG00000018671 uc001kem.4 "AK311174|AK309777" NR_024397 +HGNC:23445 NUTM2B NUT family member 2B protein-coding gene gene with protein product Approved 10q22.3 10q22.3 bA119F19.1 FAM22B family with sequence similarity 22, member B 2004-05-27 2013-03-14 2013-03-14 2015-09-04 729262 ENSG00000188199 OTTHUMG00000018572 uc031wmo.1 NG_012780 CCDS60574 A6NNL0 MGI:2685652 NUTM2B 431097 +HGNC:51204 NUTM2B-AS1 NUTM2B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2014-08-07 2014-08-07 101060691 ENSG00000225484 OTTHUMG00000018585 NR_120613 +HGNC:23447 NUTM2D NUT family member 2D protein-coding gene gene with protein product Approved 10q23.2 10q23.2 FAM22D family with sequence similarity 22, member D 2004-05-27 2013-03-14 2013-03-14 2016-10-05 728130 ENSG00000214562 OTTHUMG00000018672 uc001kes.4 NR_075100 Q5VT03 +HGNC:23448 NUTM2E NUT family member 2E other unknown Approved 10q22.3 10q22.3 FAM22E family with sequence similarity 22, member E 2004-05-27 2013-03-14 2013-03-14 2013-03-14 283008 ENSG00000228570 OTTHUMG00000018586 uc057umg.1 NG_012781 B1AL46 460693 +HGNC:23450 NUTM2F NUT family member 2F protein-coding gene gene with protein product Approved 9q22.32 09q22.32 DKFZp434I1117 FAM22F family with sequence similarity 22, member F 2004-05-27 2013-05-02 2013-03-14 2015-09-04 54754 ENSG00000130950 OTTHUMG00000020260 NM_017561 CCDS47994 A1L443 +HGNC:23449 NUTM2G NUT family member 2G protein-coding gene gene with protein product Approved 9q22.33 09q22.33 FAM22G family with sequence similarity 22, member G 2004-05-27 2013-05-02 2013-03-14 2015-09-04 441457 ENSG00000188152 OTTHUMG00000020305 NM_001170741 "CCDS43854|CCDS55329" Q5VZR2 +HGNC:45017 NUTM2HP NUT family member 2H, pseudogene pseudogene pseudogene Approved 10q11.23 10q11.23 FAM22HP family with sequence similarity 22, member H, pseudogene 2013-01-08 2013-05-02 2013-03-14 2013-05-02 729023 ENSG00000232706 OTTHUMG00000018235 NG_028755 PGOHUM00000262858 +HGNC:8070 NVL nuclear VCP-like protein-coding gene gene with protein product Approved 1q42.11 01q42.11 NVL2 "Nuclear valosin-containing protein-like|nuclear VCP-like protein" AAA ATPases 413 1997-09-05 2016-01-08 4931 ENSG00000143748 OTTHUMG00000037536 uc001hok.4 U78772 NM_002533 "CCDS1541|CCDS1542|CCDS58062|CCDS58063" O15381 9286697 MGI:1914709 RGD:1311270 NVL 602426 +HGNC:27619 NWD1 NACHT and WD repeat domain containing 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 WD repeat domain containing 362 2007-02-08 2016-04-25 284434 ENSG00000188039 OTTHUMG00000164507 uc002neu.5 BX648940 NM_001007525 CCDS32945 Q149M9 MGI:2442268 RGD:2321209 NWD1 616250 +HGNC:29229 NWD2 NACHT and WD repeat domain containing 2 protein-coding gene gene with protein product Approved 4p14 04p14 KIAA1239 KIAA1239 2006-07-07 2014-03-11 2014-03-11 2014-11-19 57495 ENSG00000174145 OTTHUMG00000157134 AB033065 NM_001144990 CCDS47040 Q9ULI1 10574462 MGI:1920464 RGD:1563065 +HGNC:8071 NXF1 nuclear RNA export factor 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "TAP|Mex67|DKFZp667O0311" tip associating protein 2000-06-09 2016-10-05 10482 ENSG00000162231 OTTHUMG00000167612 uc058cnh.1 AF112880 NM_006362 "CCDS8037|CCDS44629" Q9UBU9 "9175835|9660949" MGI:1858330 RGD:62014 NXF1 602647 +HGNC:8072 NXF2 nuclear RNA export factor 2 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "CT39|TAPL-2" "cancer/testis antigen 39|TAP like protein 2" 2000-06-09 2015-09-04 56001 ENSG00000269405 OTTHUMG00000189320 uc004eix.5 AJ277526 NM_017809 CCDS14497 Q9GZY0 "11073998|11279525" MGI:1933192 NXF2 300315 +HGNC:23984 NXF2B nuclear RNA export factor 2B protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 bA353J17.1 2007-08-03 2015-09-04 728343 ENSG00000269437 OTTHUMG00000154920 uc022cav.2 NM_001099686 CCDS43979 Q9GZY0 16382448 MGI:1933192 RGD:1559530 NXF2B +HGNC:8073 NXF3 nuclear RNA export factor 3 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 2000-06-09 2016-10-05 56000 ENSG00000147206 OTTHUMG00000022088 uc004eju.5 AJ277527 NM_022052 CCDS14503 Q9H4D5 11073998 MGI:2685230 RGD:1564923 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NXF3 NXF3 300316 +HGNC:8074 NXF4 nuclear RNA export factor 4 pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 nuclear RNA export factor 4 2000-07-31 2016-10-05 55999 ENSG00000196970 OTTHUMG00000039695 AK124700 NR_002216 11566096 NXF4 300318 +HGNC:8075 NXF5 nuclear RNA export factor 5 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 2000-07-31 2016-10-05 55998 ENSG00000126952 OTTHUMG00000022042 uc065aiu.1 AJ277654 NM_032946 CCDS14491 Q9H1B4 11566096 MGI:1933192 RGD:1566170 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=NXF5 NXF5 300319 +HGNC:18008 NXN nucleoredoxin protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "FLJ12614|NRX" 2002-01-16 2016-10-05 64359 ENSG00000167693 OTTHUMG00000090307 uc002fsa.4 XM_005256756 "CCDS10998|CCDS56013" Q6DKJ4 MGI:109331 RGD:1310489 NXN 612895 +HGNC:25179 NXNL1 nucleoredoxin-like 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 RDCVF TXNL6 thioredoxin-like 6 2004-08-05 2007-08-16 2007-08-16 2014-11-19 115861 ENSG00000171773 OTTHUMG00000182798 uc002ngs.4 BC014127 NM_138454 CCDS12360 Q96CM4 12477932 MGI:1924446 RGD:1308296 NXNL1 608791 +HGNC:30482 NXNL2 nucleoredoxin-like 2 protein-coding gene gene with protein product Approved 9q22.1 09q22.1 C9orf121 chromosome 9 open reading frame 121 2004-04-15 2007-08-16 2007-08-16 2016-10-05 158046 ENSG00000130045 OTTHUMG00000020170 uc011ltj.2 BC022521 NM_145283 "CCDS6679|CCDS55325" Q5VZ03 12477932 MGI:1922374 RGD:1594820 NXNL2 615299 +HGNC:50561 NXNP1 nucleoredoxin pseudogene 1 pseudogene pseudogene Approved 1q41 01q41 2014-05-21 2014-05-21 100130251 ENSG00000226693 OTTHUMG00000037140 NG_028320 PGOHUM00000259516 +HGNC:28527 NXPE1 neurexophilin and PC-esterase domain family member 1 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 MGC34290 FAM55A "family with sequence similarity 55, member A|neurexophilin and PC-esterase domain family, member 1" 2005-01-25 2012-06-11 2015-11-18 2015-11-18 120400 ENSG00000095110 OTTHUMG00000168284 uc001ppa.5 BC029049 NM_152315 CCDS8372 Q8N323 12477932 RGD:1566243 NXPE1 +HGNC:26331 NXPE2 neurexophilin and PC-esterase domain family member 2 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 FLJ25224 FAM55B "family with sequence similarity 55, member B|neurexophilin and PC-esterase domain family, member 2" 2005-01-25 2012-06-11 2015-11-18 2015-11-18 120406 ENSG00000204361 OTTHUMG00000168293 uc009yyy.3 AK057953 NM_182495 CCDS44738 Q96DL1 MGI:1925502 RGD:2323193 +HGNC:44082 NXPE2P1 neurexophilin and PC-esterase domain family member 2 pseudogene 1 pseudogene pseudogene Approved 11q23.2 11q23.2 neurexophilin and PC-esterase domain family, member 2 pseudogene 1 2012-06-11 2015-11-18 2015-11-18 101926945 ENSG00000255982 OTTHUMG00000168290 NG_046621 PGOHUM00000242493 +HGNC:28238 NXPE3 neurexophilin and PC-esterase domain family member 3 protein-coding gene gene with protein product Approved 3q12.3 03q12.3 MGC15606 FAM55C "family with sequence similarity 55, member C|neurexophilin and PC-esterase domain family, member 3" 2005-01-25 2012-06-11 2015-11-18 2015-11-18 91775 ENSG00000144815 OTTHUMG00000159179 uc010hpn.4 AK054664 NM_145037 CCDS2945 Q969Y0 12975309 MGI:2686598 RGD:1584648 +HGNC:23117 NXPE4 neurexophilin and PC-esterase domain family member 4 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 FLJ20127 "C11orf33|FAM55D" "chromosome 11 open reading frame 33|family with sequence similarity 55, member D|neurexophilin and PC-esterase domain family, member 4" 2003-09-30 2012-06-11 2015-11-18 2016-10-05 54827 ENSG00000137634 OTTHUMG00000168291 uc001ppc.4 AK000134 NM_017678 "CCDS41718|CCDS44737" Q6UWF7 20056006 MGI:1924792 RGD:1560781 +HGNC:20693 NXPH1 neurexophilin 1 protein-coding gene gene with protein product Approved 7p21.3 07p21.3 2003-03-20 2016-10-05 30010 ENSG00000122584 OTTHUMG00000151941 uc003srv.3 AB047362 NM_152745 CCDS47540 P58417 9570794 MGI:107492 RGD:3218 NXPH1 604639 +HGNC:8076 NXPH2 neurexophilin 2 protein-coding gene gene with protein product Approved 2q22.1 02q22.1 NPH2 1999-09-16 2015-09-01 11249 ENSG00000144227 OTTHUMG00000153636 uc002tvi.4 AF043467 NM_007226 CCDS46421 O95156 9570794 MGI:107491 RGD:1598138 NXPH2 604635 +HGNC:8077 NXPH3 neurexophilin 3 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 NPH3 1999-09-16 2016-01-15 11248 ENSG00000182575 OTTHUMG00000161491 uc002ipa.4 AF043468 NM_007225 CCDS11550 O95157 9570794 MGI:1336188 RGD:620693 NXPH3 604636 +HGNC:8078 NXPH4 neurexophilin 4 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 NPH4 1999-09-16 2015-08-25 11247 ENSG00000182379 OTTHUMG00000171241 uc010srf.2 AF043469 NM_007224 CCDS8933 O95158 9570794 MGI:1336197 RGD:628723 NXPH4 604637 +HGNC:15913 NXT1 nuclear transport factor 2 like export factor 1 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "P15|MTR2" "NTX2-like export factor1|NTF2-like export factor 1|nuclear transport factor 2-like export factor 1" 2001-06-21 2016-04-05 2016-10-05 29107 ENSG00000132661 OTTHUMG00000032059 uc002wsx.2 AF156957 NM_013248 CCDS13150 Q9UKK6 "10567585|11259602" MGI:1929619 RGD:1309327 NXT1 605811 +HGNC:39708 NXT1P1 nuclear transport factor 2 like export factor 1 pseudogene 1 pseudogene pseudogene Approved 13q13.3 13q13.3 NTF2-like export factor 1 pseudogene 1 2011-03-23 2016-04-05 2016-04-05 100652801 ENSG00000214823 OTTHUMG00000016766 NG_030242 PGOHUM00000248372 +HGNC:18151 NXT2 nuclear transport factor 2 like export factor 2 protein-coding gene gene with protein product Approved Xq23 Xq23 P15-2 nuclear transport factor 2-like export factor 2 2002-12-02 2016-04-05 2016-10-05 55916 ENSG00000101888 OTTHUMG00000022185 uc004eof.3 AF246127 NM_018698 "CCDS14546|CCDS56605|CCDS56606" Q9NPJ8 11073998 MGI:2147914 RGD:1560204 NXT2 300320 +HGNC:22009 NYAP1 neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FLJ37538 "C7orf51|KIAA1486L" "chromosome 7 open reading frame 51|KIAA1486-like|neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 1" 2007-07-10 2011-11-30 2016-03-14 2016-03-14 222950 ENSG00000166924 OTTHUMG00000155290 uc003uvd.3 AK094857 NM_173564 CCDS5696 Q6ZVC0 21946561 MGI:2443880 RGD:1310964 615477 +HGNC:29291 NYAP2 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 KIAA1486 KIAA1486 2009-07-09 2011-11-30 2011-11-30 2014-11-19 57624 ENSG00000144460 OTTHUMG00000153450 uc002voe.3 AB040919 NM_020864 CCDS46529 Q9P242 "10819331|21946561" MGI:2443135 RGD:9171458 615478 +HGNC:20165 NYNRIN NYN domain and retroviral integrase containing protein-coding gene gene with protein product Approved 14q12 14q12 "FLJ11811|CGIN1" Cousin of GIN1 KIAA1305 KIAA1305 2003-11-21 2009-10-14 2009-10-14 2015-08-25 57523 ENSG00000205978 OTTHUMG00000171314 uc001wpf.4 AB037726 XM_011537016 CCDS45090 Q9P2P1 "19561090|17114934" MGI:2652872 RGD:6486974 NYNRIN +HGNC:8080 NYS2 nystagmus 2, congenital autosomal dominant phenotype phenotype only Approved 6p12 06p12 NYSA 1998-06-16 1998-06-16 4933 "8414024|5504065" 164100 +HGNC:8081 NYS3 nystagmus 3, congenital autosomal dominant phenotype phenotype only Approved 7p11 07p11 CN 1998-06-16 2011-02-10 4934 9806847 608345 +HGNC:19188 NYS4 nystagmus 4, congenital autosomal dominant phenotype phenotype only Approved 13q31-q33 13q31-q33 2003-01-14 2011-02-10 317685 193003 +HGNC:8082 NYX nyctalopin protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "CLRP|CSNB1A" "CSNB1|CSNB4" 2000-07-31 2014-11-19 60506 ENSG00000188937 OTTHUMG00000021370 uc004dfh.3 AF254868 NM_022567 CCDS14256 Q9GZU5 "11062471|11062472" MGI:2448607 RGD:1561300 Mutations of Nyctalopin|http://www.retina-international.org/files/sci-news/nyxmut.htm NYX 300278 123966 +HGNC:8084 OA3 ocular albinism 3 (autosomal recessive) phenotype phenotype only Approved 6q13-q15 06q13-q15 1993-01-28 2011-02-10 4936 1632442 +HGNC:44362 OACYLP O-acyltransferase like, pseudogene pseudogene pseudogene Approved 18q21.32 18q21.32 ACYL3P acyltransferase 3, pseudogene 2012-08-20 2012-08-22 390858 ENSG00000224367 OTTHUMG00000154709 DV080257 NR_024021 "20210993|18085818" MGI:2442915 +HGNC:28752 OAF out at first homolog protein-coding gene gene with protein product Approved 11q23.3 11q23.3 MGC52117 OAF homolog (Drosophila) 2005-12-22 2015-07-02 2015-07-02 220323 ENSG00000184232 OTTHUMG00000166139 uc001pxb.4 BC047726 NM_178507 CCDS8430 Q86UD1 12477932 MGI:94852 RGD:1305890 OAF +HGNC:8085 OAP osteoarthrosis, precocious phenotype phenotype only Approved 11q 11q 1987-09-11 2014-01-30 4937 +HGNC:21257 OARD1 O-acyl-ADP-ribose deacylase 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "MGC19570|dJ34B21.3|TARG1" terminal ADP-ribose protein glycohydrolase 1 C6orf130 chromosome 6 open reading frame 130 2003-05-29 2012-11-06 2012-11-06 2015-03-17 221443 ENSG00000124596 OTTHUMG00000014667 uc003opm.4 AJ420538 NM_145063 CCDS34445 Q9Y530 21849506 MGI:2146818 RGD:1308299 614393 3.5.1.- +HGNC:8086 OAS1 2'-5'-oligoadenylate synthetase 1 protein-coding gene gene with protein product Approved 12q24.2 12q24.2 "OIASI|IFI-4" OIAS "2',5'-oligoadenylate synthetase 1 (40-46 kD)|2'-5'-oligoadenylate synthetase 1, 40/46kDa" 2001-06-22 2015-11-09 2015-11-09 4938 ENSG00000089127 OTTHUMG00000169792 uc001tuc.4 X04371 XM_017019361 "CCDS31905|CCDS41838|CCDS44980|CCDS81742" P00973 "9344649|9325053" "MGI:2180860|MGI:97430|MGI:2149633|MGI:2140770|MGI:2180856|MGI:2180855|MGI:97429|MGI:2180853" OAS1 164350 2.7.7.- +HGNC:8087 OAS2 2'-5'-oligoadenylate synthetase 2 protein-coding gene gene with protein product Approved 12q24.2 12q24.2 "2'-5'-oligoadenylate synthetase 2 (69-71 kD)|2'-5'-oligoadenylate synthetase 2, 69/71kDa" 1998-06-10 2015-11-09 2015-11-09 4939 ENSG00000111335 OTTHUMG00000169802 uc001tuj.4 M87284 XR_001748725 "CCDS31906|CCDS41839|CCDS44982" P29728 9790745 MGI:2180852 RGD:1359697 OAS2 603350 +HGNC:8088 OAS3 2'-5'-oligoadenylate synthetase 3 protein-coding gene gene with protein product Approved 12q24.2 12q24.2 "2'-5'-oligoadenylate synthetase 3 (100 kD)|2'-5'-oligoadenylate synthetase 3, 100kDa" 1998-06-10 2015-11-09 2015-11-09 4940 ENSG00000111331 OTTHUMG00000169795 uc001tug.4 AF063613 XM_005253889 CCDS44981 Q9Y6K5 9790745 MGI:2180850 RGD:1359319 OAS3 603351 +HGNC:8089 OASD ocular albinism and sensorineural deafness phenotype phenotype only Approved Xp22.3-p22.2 Xp22.3-p22.2 1993-05-14 2008-05-14 4941 300650 +HGNC:8090 OASL 2'-5'-oligoadenylate synthetase like protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "TRIP14|p59OASL" 2'-5'-oligoadenylate synthetase-like 1998-10-12 2016-03-10 2016-10-05 8638 ENSG00000135114 OTTHUMG00000154981 uc001tzj.3 AF063611 NM_003733 "CCDS9211|CCDS9212|CCDS73536" Q15646 10087211 MGI:2180849 RGD:1308586 OASL 603281 +HGNC:8091 OAT ornithine aminotransferase protein-coding gene gene with protein product Approved 10q26.13 10q26.13 HOGA "Ornithine aminotransferase|ornithine aminotransferase precursor|gyrate atrophy" 2001-06-22 2010-01-20 2016-10-12 4942 ENSG00000065154 OTTHUMG00000019213 uc001lhp.4 BC016928 NM_000274 "CCDS7639|CCDS53586" P04181 1682785 MGI:97394 RGD:621724 LRG_685|http://www.lrg-sequence.org/LRG/LRG_685 OAT 613349 123971 2.6.1.13 +HGNC:8094 OATP1 ornithine aminotransferase pseudogene 1 pseudogene pseudogene Approved 10q26 10q26 OATL3 ornithine aminotransferase-like 3 (pseudogene) 1993-09-08 2010-10-15 2010-10-15 2010-10-15 4945 S65768 NG_001169 8406505 +HGNC:8095 OAZ1 ornithine decarboxylase antizyme 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "AZI|MGC138338" antizyme 1 OAZ 1996-03-19 2014-11-18 4946 ENSG00000104904 OTTHUMG00000178459 uc002lvk.4 NM_004152 "CCDS58639|CCDS77214" P54368 "7811704|8954789" MGI:109433 RGD:3219 OAZ1 601579 +HGNC:8096 OAZ2 ornithine decarboxylase antizyme 2 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 1998-06-22 2006-05-11 4947 ENSG00000180304 OTTHUMG00000172473 uc002ano.3 AF057297 NM_002537 CCDS58372 O95190 "9782076|10352227" MGI:109492 RGD:1562933 OAZ2 604152 +HGNC:8097 OAZ3 ornithine decarboxylase antizyme 3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 2000-08-01 2014-11-19 51686 ENSG00000143450 OTTHUMG00000013061 uc010pdl.4 AF175296 NM_016178 "CCDS58028|CCDS76216|CCDS81378" Q9UMX2 10781085 MGI:1858170 RGD:1599278 OAZ3 605138 +HGNC:23380 OBP2A odorant binding protein 2A protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "hOBPIIa|OBP|LCN13" Lipocalins 631 2003-11-14 2016-10-05 29991 ENSG00000122136 OTTHUMG00000020909 uc004cgb.3 AJ251029 NM_014582 "CCDS6992|CCDS78455|CCDS78456" Q9NY56 MGI:3651927 RGD:1588212 OBP2A 164320 +HGNC:23381 OBP2B odorant binding protein 2B protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "hOBPIIb|LCN14" Lipocalins 631 2003-11-14 2016-10-05 29989 ENSG00000171102 OTTHUMG00000020860 uc033djy.2 AJ251026 NM_014581 CCDS6961 Q9NPH6 MGI:2387617 OBP2B 604606 +HGNC:15719 OBSCN obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "KIAA1556|UNC89|KIAA1639|ARHGEF30" "Fibronectin type III domain containing|I-set domain containing|Rho guanine nucleotide exchange factors" "555|593|722" 2001-05-21 2016-10-12 84033 ENSG00000154358 OTTHUMG00000039772 uc001hsq.2 AJ002535 NM_052843 "CCDS1570|CCDS58065|CCDS59204" Q5VST9 "11448995|11814696" MGI:2681862 RGD:631335 LRG_412|http://www.lrg-sequence.org/LRG/LRG_412 OBSCN 608616 objectId:2131 +HGNC:41941 OBSCN-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:41411 OBSCN-IT2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:29092 OBSL1 obscurin like 1 protein-coding gene gene with protein product Approved 2q35 02q35 KIAA0657 "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2005-10-20 2016-07-12 2016-07-12 23363 ENSG00000124006 OTTHUMG00000059157 uc010fwk.4 BC007201 XM_011510857 "CCDS46520|CCDS54433|CCDS63134" O75147 9734811 MGI:2138628 RGD:1306073 OBSL1 610991 201543 +HGNC:8100 OC90 otoconin 90 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 PLA2L 1999-01-19 2015-08-25 729330 ENSG00000253117 OTTHUMG00000164672 uc011lix.1 Z14310 NM_001080399 CCDS47919 Q02509 "10329003|9860971" MGI:1313269 RGD:1593441 OC90 601658 +HGNC:8101 OCA2 OCA2 melanosomal transmembrane protein protein-coding gene gene with protein product Approved 15q12-q13.1 15q12-q13.1 "BEY2|EYCL|BEY|BEY1" "melanocyte-specific transporter protein|P-protein" "D15S12|P|EYCL3|EYCL2" "eye color 3 (brown)|eye color 2 (central brown)|oculocutaneous albinism II (pink-eye dilution homolog, mouse)" 1993-02-05 2016-01-14 2016-10-11 4948 ENSG00000104044 OTTHUMG00000128871 uc001zbh.6 NM_000275 "CCDS10020|CCDS73701" Q04671 MGI:97454 RGD:2318412 "Mutations of the P-Gene|http://www.retina-international.org/files/sci-news/pgenemut.htm|Albinism Database|http://albinismdb.med.umn.edu/" OCA2 611409 123974 +HGNC:44139 OCA5 oculocutaneous albinism 5 (autosomal recessive) phenotype phenotype only Approved 4q24 04q24 2013-08-22 2013-08-22 101926885 23050561 615312 +HGNC:26221 OCEL1 occludin/ELL domain containing 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 FLJ22709 2006-08-22 2014-11-18 79629 ENSG00000099330 OTTHUMG00000182726 uc002nfp.4 BC029361 NM_024578 CCDS12351 Q9H607 12477932 MGI:1924340 RGD:1565407 OCEL1 +HGNC:16074 OCIAD1 OCIA domain containing 1 protein-coding gene gene with protein product Approved 4p11 04p11 "FLJ20455|TPA018|OCIA|Asrij" 2004-09-15 2014-11-19 54940 ENSG00000109180 OTTHUMG00000102095 uc003gyo.4 AF324350 NM_017830 "CCDS3484|CCDS43228|CCDS47052" Q9NX40 "11162530|18328549" MGI:1915345 RGD:1359549 OCIAD1 +HGNC:40751 OCIAD1-AS1 OCIAD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4p11 04p11 OCIAD1 antisense RNA 1 (non-protein coding) 2011-12-01 2012-08-15 2014-11-19 100861517 ENSG00000248256 OTTHUMG00000163197 uc062wmm.1 "AI018597|BG200457" +HGNC:28685 OCIAD2 OCIA domain containing 2 protein-coding gene gene with protein product Approved 4p11 04p11 MGC45416 2004-09-15 2016-10-05 132299 ENSG00000145247 OTTHUMG00000128626 uc003gyt.5 BC032808 NM_152398 "CCDS3485|CCDS33981" Q56VL3 17054434 MGI:1916377 RGD:2319541 OCIAD2 +HGNC:31827 OCIAD2P1 OCIA domain containing 2 pseudogene 1 pseudogene pseudogene Approved 8q21.13 08q21.13 OCIAD2 pseudogene 1 2004-09-15 2010-03-19 2014-11-19 100287085 NG_017000 PGOHUM00000249401 +HGNC:8103 OCLM oculomedin protein-coding gene gene with protein product Approved 1q31.1 01q31.1 1999-08-20 2014-11-19 10896 ENSG00000262180 OTTHUMG00000177601 uc001gry.3 AF142063 NM_022375 CCDS58051 Q9Y5M6 10362512 OCLM 604301 +HGNC:8104 OCLN occludin protein-coding gene gene with protein product Approved 5q13.2 05q13.2 PPP1R115 "tight junction protein occludin TM4 minus|phosphatase 1, regulatory subunit 115" Protein phosphatase 1 regulatory subunits 694 1998-01-20 2016-10-05 100506658 ENSG00000197822 OTTHUMG00000099356 uc003jwu.3 U49184 NM_002538 "CCDS4006|CCDS54864" Q16625 8601611 MGI:106183 RGD:620089 OCLN 602876 239959 +HGNC:8105 OCM oncomodulin protein-coding gene gene with protein product Approved 7p22.1 07p22.1 OCM1 "oncomodulin 1|beta parvalbumin" EF-hand domain containing 863 1992-04-16 2016-09-09 654231 ENSG00000122543 OTTHUMG00000155499 uc064bff.1 BC069468 NM_001097622 CCDS43548 P0CE72 "1559707|8354278" MGI:97401 OCM 164795 +HGNC:34396 OCM2 oncomodulin 2 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 EF-hand domain containing 863 2008-10-30 2016-10-05 4951 ENSG00000135175 OTTHUMG00000154162 uc003upc.4 BC156841 NM_006188 CCDS5653 P0CE71 MGI:97401 RGD:3222 OCM2 +HGNC:8108 OCRL OCRL, inositol polyphosphate-5-phosphatase protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 OCRL1 oculocerebrorenal syndrome of Lowe Phosphoinositide phosphatases 1079 2001-06-22 2016-05-20 2016-10-05 4952 ENSG00000122126 OTTHUMG00000022706 uc004euq.4 U57627 NM_000276 "CCDS35393|CCDS35394" Q01968 MGI:109589 RGD:1594526 "Database of the OCRL1 Mutations Causing Lowe Syndrome|http://research.nhgri.nih.gov/lowe/|LOVD at NCBI|http://www.ncbi.nlm.nih.gov/lovd/home.php?select_db=OCRL" OCRL 300535 123978 objectId:1460 3.1.3.36 +HGNC:16116 OCSTAMP osteoclast stimulatory transmembrane protein protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ257E24.3 C20orf123 chromosome 20 open reading frame 123 2001-07-17 2012-03-27 2012-03-27 2012-03-27 128506 ENSG00000149635 OTTHUMG00000032652 uc010zxu.3 AL034424 XM_496476 CCDS54468 Q9BR26 18064667 MGI:1921864 RGD:1308620 OCSTAMP +HGNC:26043 ODAM odontogenic, ameloblast asssociated protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "APin|FLJ20513" 2006-07-06 2014-11-19 54959 ENSG00000109205 OTTHUMG00000129406 uc003hfc.4 AK000520 NM_017855 CCDS3536 A1E959 14647039 MGI:1916842 RGD:1561883 ODAM 614843 +HGNC:8109 ODC1 ornithine decarboxylase 1 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 ODC 2001-06-22 2016-10-05 4953 ENSG00000115758 OTTHUMG00000090450 uc002rao.3 NM_002539 CCDS1672 P11926 MGI:97402 RGD:3227 ODC1 165640 objectId:1276 4.1.1.17 +HGNC:8110 ODCP ornithine decarboxylase pseudogene pseudogene pseudogene Approved 7q32.1 07q32.1 ODC2 2001-06-22 2015-03-19 4954 ENSG00000244556 OTTHUMG00000158406 NG_027864 PGOHUM00000302931 +HGNC:8113 ODF1 outer dense fiber of sperm tails 1 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "ODFPG|ODF27|RT7|HSPB10|CT133" cancer/testis antigen 133 outer dense fibre of sperm tails 1 Small heat shock proteins 585 1994-10-25 2002-10-21 2016-10-05 4956 ENSG00000155087 OTTHUMG00000164719 uc003ykt.3 M93131 NM_024410 CCDS6293 Q14990 8305202 MGI:97424 RGD:3228 ODF1 182878 +HGNC:8114 ODF2 outer dense fiber of sperm tails 2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "ODF84|CT134" "cancer/testis antigen 134|cenexin" outer dense fibre of sperm tails 2 1998-07-03 2002-10-21 2016-10-05 4957 ENSG00000136811 OTTHUMG00000020748 uc064wes.1 AF012549 XM_011518722 "CCDS6902|CCDS56585|CCDS56586|CCDS56587|CCDS56588|CCDS56589|CCDS56590" Q5BJF6 "9045620|10072582" MGI:1098824 RGD:3229 ODF2 602015 +HGNC:49461 ODF2-AS1 ODF2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.11 09q34.11 2013-12-06 2013-12-06 107080620 ENSG00000225951 OTTHUMG00000020745 AW303426 +HGNC:29225 ODF2L outer dense fiber of sperm tails 2 like protein-coding gene gene with protein product Approved 1p22.3 01p22.3 KIAA1229 outer dense fiber of sperm tails 2-like 2005-08-17 2016-02-23 2016-04-25 57489 ENSG00000122417 OTTHUMG00000010080 uc001dlm.3 XM_011541815 "CCDS30763|CCDS41354|CCDS53339" Q9ULJ1 10574462 MGI:1098600 RGD:1593831 ODF2L +HGNC:19905 ODF3 outer dense fiber of sperm tails 3 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "SHIPPO1|hSHIPPO|CT135" cancer/testis antigen 135 2002-12-09 2014-11-18 113746 ENSG00000177947 OTTHUMG00000119073 uc001lob.4 AB067774 NM_001286136 "CCDS7688|CCDS65981" Q96PU9 11870087 MGI:1916537 RGD:1310028 ODF3 608356 +HGNC:34388 ODF3B outer dense fiber of sperm tails 3B protein-coding gene gene with protein product Approved 22q13.33 22q13.33 2008-07-04 2015-08-25 440836 ENSG00000177989 OTTHUMG00000150334 uc003bmh.2 NM_001014440 CCDS43039 A8MYP8 MGI:1917363 RGD:1564322 ODF3B +HGNC:28735 ODF3L1 outer dense fiber of sperm tails 3 like 1 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 MGC48986 2005-01-05 2016-05-16 2016-10-05 161753 ENSG00000182950 OTTHUMG00000142837 uc002bax.2 BC039862 NM_175881 CCDS10285 Q8IXM7 MGI:2681875 RGD:1304976 ODF3L1 +HGNC:26841 ODF3L2 outer dense fiber of sperm tails 3 like 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ40059 C19orf19 chromosome 19 open reading frame 19 2004-03-12 2008-07-04 2016-05-16 2016-05-16 284451 ENSG00000181781 OTTHUMG00000180547 uc002lor.3 AK097378 NM_182577 CCDS12027 Q3SX64 14702039 MGI:2686003 RGD:1310260 ODF3L2 +HGNC:19056 ODF4 outer dense fiber of sperm tails 4 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "OPPO1|CT136" cancer/testis antigen 136 2002-12-09 2016-10-05 146852 ENSG00000184650 OTTHUMG00000108190 uc002gle.2 AB081120 XM_005256476 "CCDS11140|CCDS82069" Q2M2E3 MGI:2182079 RGD:1359332 ODF4 610097 +HGNC:8118 OED Oregon eye disease phenotype phenotype only Approved Xp21.3 Xp21.3 1991-08-21 2014-01-30 4961 8240114 +HGNC:8119 OFC# entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:8120 OFC1 orofacial cleft 1 phenotype phenotype only Approved 6p24 06p24 OFC 2001-06-22 2012-10-02 4963 119530 +HGNC:8121 OFC2 orofacial cleft 2 phenotype phenotype only Approved 2p14-p13 02p14-p13 1991-05-15 2008-05-15 4964 9676424 602966 +HGNC:8122 OFC3 orofacial cleft 3 phenotype phenotype only Approved 19q13 19q13 1991-08-08 2008-07-17 4965 7668251 600757 +HGNC:21017 OFCC1 orofacial cleft 1 candidate 1 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 MRDS1 2003-05-02 2015-08-25 266553 ENSG00000181355 OTTHUMG00000159104 uc063lsn.1 AF548113 NM_153003 Q8IZS5 MGI:2658851 RGD:1589812 OFCC1 614287 +HGNC:2567 OFD1 OFD1, centriole and centriolar satellite protein protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "71-7A|JBTS10" "CXorf5|RP23" "retinitis pigmentosa 23 (X-linked recessive)|oral-facial-digital syndrome 1" 1998-10-01 2016-05-20 2016-10-05 8481 ENSG00000046651 OTTHUMG00000021159 uc004cvp.5 Y15164 NM_003611 "CCDS14157|CCDS83454|CCDS83455" O75665 "9722947|9215688|22619378" MGI:1350328 RGD:1562231 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=OFD1 OFD1 300170 123982 +HGNC:23873 OFD1P1Y OFD1 pseudogene 1, Y-linked pseudogene pseudogene Approved Yq11.222 Yq11.222 "OFDYP1|OFD1P1" OFD1 pseudogene Y-linked 1 2004-05-24 2010-06-28 2010-06-28 2016-10-05 378009 ENSG00000226011 OTTHUMG00000041650 NG_003114 12815422 PGOHUM00000233974 +HGNC:23874 OFD1P2Y OFD1 pseudogene 2, Y-linked pseudogene pseudogene Approved Yq11.222 Yq11.222 "OFDYP2|OFD1P2|OFD1PY2" "OFD1 pseudogene Y-linked 2|OFD1 pseudogene 2|OFD1 pseudogene, Y-linked 2" 2004-05-24 2010-06-28 2010-06-28 2016-10-05 378010 ENSG00000226611 OTTHUMG00000041948 NG_003115 12815422 PGOHUM00000233768 +HGNC:23875 OFD1P3Y OFD1 pseudogene 3, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 "OFDYP3|OFD1P3|OFD1PY3|OFD1P19Y|OFD1P19|OFD1PY19" "OFD1 pseudogene Y-linked 3|OFD1 pseudogene 3|OFD1 pseudogene, Y-linked 3|OFD1 pseudogene 19, Y-linked|OFD1 pseudogene 19|OFD1 pseudogene, Y-linked 19" 2004-05-24 2010-06-28 2010-06-28 2014-11-19 386687 ENSG00000231988 OTTHUMG00000041410 NG_003116 12815422 PGOHUM00000233918 +HGNC:23876 OFD1P4Y OFD1 pseudogene 4, Y-linked pseudogene pseudogene Approved Yq11.222 Yq11.222 "OFDYP4|OFD1P4|OFD1PY4" "OFD1 pseudogene Y-linked 4|OFD1 pseudogene 4|OFD1 pseudogene, Y-linked 4" 2004-05-24 2010-06-28 2010-06-28 2016-10-05 386688 ENSG00000229406 OTTHUMG00000041975 NG_003117 12815422 PGOHUM00000233773 +HGNC:23877 OFD1P5Y OFD1 pseudogene 5, Y-linked pseudogene pseudogene Approved Yq11.222 Yq11.222 "OFDYP5|OFD1P5|OFD1PY5" "OFD1 pseudogene Y-linked 5|OFD1 pseudogene 5|OFD1 pseudogene, Y-linked 5" 2004-05-24 2010-06-28 2010-06-28 2016-10-05 386689 ENSG00000240438 OTTHUMG00000041982 NG_003118 12815422 PGOHUM00000233776 +HGNC:13657 OFD1P6Y OFD1 pseudogene 6, Y-linked pseudogene pseudogene Approved Yq11.222 Yq11.222 "OFD1P2|OFDYP6|OFD1P6|OFD1PY6" "OFD1 pseudogene 2|OFD1 pseudogene Y-linked 6|OFD1 pseudogene 6|OFD1 pseudogene, Y-linked 6" 2003-08-06 2010-06-28 2010-06-28 2014-11-19 386690 ENSG00000242153 OTTHUMG00000041945 NG_003119 12815422 PGOHUM00000233996 +HGNC:23879 OFD1P7Y OFD1 pseudogene 7, Y-linked pseudogene pseudogene Approved Yq11.222 Yq11.222 "OFDYP7|OFD1P7|OFD1PY7" "OFD1 pseudogene Y-linked 7|OFD1 pseudogene 7|OFD1 pseudogene, Y-linked 7" 2004-05-24 2010-06-28 2010-06-28 2014-11-19 386691 ENSG00000238088 OTTHUMG00000036507 NG_003120 12815422 PGOHUM00000233999 +HGNC:23880 OFD1P8Y OFD1 pseudogene 8, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 "OFDYP8|OFD1P8|OFD1PY8" "OFD1 pseudogene Y-linked 8|OFD1 pseudogene 8|OFD1 pseudogene, Y-linked 8" 2004-05-24 2010-06-28 2010-06-28 2010-09-21 386692 ENSG00000231159 OTTHUMG00000043575 NG_003121 12815422 PGOHUM00000234019 +HGNC:23881 OFD1P9Y OFD1 pseudogene 9, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 "OFDYP9|OFD1P9|OFD1PY9" "OFD1 pseudogene Y-linked 9|OFD1 pseudogene 9|OFD1 pseudogene, Y-linked 9" 2004-05-24 2010-06-28 2010-06-28 2010-09-21 386693 ENSG00000230476 OTTHUMG00000043852 NG_003122 12815422 PGOHUM00000233815 +HGNC:23882 OFD1P10Y OFD1 pseudogene 10, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 "OFDYP10|OFD1P10|OFD1PY10" "OFD1 pseudogene Y-linked 10|OFD1 pseudogene 10|OFD1 pseudogene, Y-linked 10" 2004-05-24 2010-06-28 2010-06-28 2010-09-21 386694 ENSG00000225466 OTTHUMG00000044054 NG_003123 "12815422|8988172" PGOHUM00000234040 +HGNC:23883 OFD1P11Y OFD1 pseudogene 11, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 "OFDYP11|OFD1P11|OFD1PY11" "OFD1 pseudogene Y-linked 11|OFD1 pseudogene 11|OFD1 pseudogene, Y-linked 11" 2004-05-24 2010-06-28 2010-06-28 2014-11-19 386695 ENSG00000237302 OTTHUMG00000044987 NG_003125 12815422 PGOHUM00000234045 +HGNC:23884 OFD1P12Y OFD1 pseudogene 12, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "OFDYP12|OFD1P12|OFD1PY12" "OFD1 pseudogene Y-linked 12|OFD1 pseudogene 12|OFD1 pseudogene, Y-linked 12" 2004-05-24 2010-06-28 2010-06-28 2016-10-05 386696 ENSG00000232585 OTTHUMG00000045044 NG_003126 12815422 PGOHUM00000234049 +HGNC:23885 OFD1P13Y OFD1 pseudogene 13, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "OFDYP13|OFD1P13|OFD1PY13" "OFD1 pseudogene Y-linked 13|OFD1 pseudogene 13|OFD1 pseudogene, Y-linked 13" 2004-05-24 2010-06-28 2010-06-28 2016-10-05 386697 ENSG00000225287 OTTHUMG00000045290 NG_003127 12815422 PGOHUM00000233873 +HGNC:23886 OFD1P14Y OFD1 pseudogene 14, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "OFDYP14|OFD1P14|OFD1PY14" "OFD1 pseudogene Y-linked 14|OFD1 pseudogene 14|OFD1 pseudogene, Y-linked 14" 2004-05-24 2010-06-28 2010-06-28 2010-06-28 386698 NG_003128 12815422 +HGNC:23887 OFD1P15Y OFD1 pseudogene 15, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 "OFDYP15|OFD1P15|OFD1PY15" "OFD1 pseudogene Y-linked 15|OFD1 pseudogene 15|OFD1 pseudogene, Y-linked 15" 2004-05-24 2010-06-28 2010-06-28 2014-11-19 386699 ENSG00000234888 OTTHUMG00000045278 NG_003129 12815422 PGOHUM00000233882 +HGNC:18213 OFD1P16Y OFD1 pseudogene 16, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 "OFDYP16|OFD1P16|OFD1PY16" "OFD1 pseudogene Y-linked 16|OFD1 pseudogene 16|OFD1 pseudogene, Y-linked 16" 2004-12-13 2010-06-28 2010-06-28 2014-11-19 442485 ENSG00000277519 OTTHUMG00000188103 XM_498415 PGOHUM00000233803 +HGNC:1332 OFD1P17 OFD1 pseudogene 17 pseudogene pseudogene Approved 5p13.2 05p13.2 "71-7A3|71-7A5" "C5orf1|OFD1P1" oral-facial-digital syndrome 1, pseudogene 1 1998-10-01 2010-05-12 2010-05-12 2016-10-05 23738 ENSG00000228212 OTTHUMG00000162066 NG_003023 9722947 PGOHUM00000235564 +HGNC:2589 OFD1P18Y OFD1 pseudogene 18, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 71-7A2 "CYorf1|OFD1P18|OFD1PY18" "chromosome Y open reading frame 1|OFD1 pseudogene 18|OFD1 pseudogene, Y-linked 18" 1998-10-01 2010-06-28 2010-06-28 2016-10-05 10751 ENSG00000235511 OTTHUMG00000045289 L18173 NG_009011 9722947 PGOHUM00000233877 +HGNC:8124 OGDH oxoglutarate dehydrogenase protein-coding gene gene with protein product Approved 7p13 07p13 E1k oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 1989-06-30 2016-03-14 2016-10-05 4967 ENSG00000105953 OTTHUMG00000155304 uc003tln.4 D10523 XM_005249759 "CCDS34627|CCDS47580|CCDS55107" Q02218 "8020988|1542694" MGI:1098267 RGD:1561359 OGDH 613022 436832 1.2.4.2 +HGNC:25590 OGDHL oxoglutarate dehydrogenase-like protein-coding gene gene with protein product Approved 10q11.23 10q11.23 FLJ10851 2004-05-27 2015-09-01 55753 ENSG00000197444 OTTHUMG00000018200 uc001jie.4 AK001713 NM_018245 "CCDS7234|CCDS44390|CCDS44391" Q9ULD0 10574462 MGI:3616088 RGD:1310916 OGDHL +HGNC:25585 OGFOD1 2-oxoglutarate and iron dependent oxygenase domain containing 1 protein-coding gene gene with protein product Approved 16q13 16q13 "KIAA1612|FLJ10826|TPA1" TPA1, termination and polyadenylation 1, homolog (S. cerevisiae) 2-oxoglutarate and iron-dependent oxygenase domain containing 1 2006-02-14 2016-03-10 2016-10-05 55239 ENSG00000087263 OTTHUMG00000133237 uc002ejb.4 BC032919 NM_018233 CCDS10761 Q8N543 10997877 MGI:2442978 RGD:1308848 OGFOD1 615857 +HGNC:39202 OGFOD1P1 2-oxoglutarate and iron dependent oxygenase domain containing 1 pseudogene 1 pseudogene pseudogene Approved 13q14.2 13q14.2 2-oxoglutarate and iron-dependent oxygenase domain containing 1 pseudogene 1 2010-11-23 2016-03-10 2016-03-10 387924 ENSG00000231665 OTTHUMG00000016910 NG_011397 PGOHUM00000248397 +HGNC:25823 OGFOD2 2-oxoglutarate and iron dependent oxygenase domain containing 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "FLJ13491|FLJ37501" 2-oxoglutarate and iron-dependent oxygenase domain containing 2 2006-02-14 2016-03-10 2016-03-10 79676 ENSG00000111325 OTTHUMG00000168778 uc001uea.2 AK094820 NM_024623 "CCDS41855|CCDS76617|CCDS76618" Q6N063 12477932 MGI:1913877 RGD:1310594 OGFOD2 +HGNC:26174 OGFOD3 2-oxoglutarate and iron dependent oxygenase domain containing 3 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 FLJ22222 C17orf101 "chromosome 17 open reading frame 101|2-oxoglutarate and iron-dependent oxygenase domain containing 3" 2008-11-27 2012-10-23 2016-03-10 2016-03-10 79701 ENSG00000181396 uc002keu.3 BC023602 NM_175902 "CCDS11811|CCDS11812" Q6PK18 12477932 MGI:1913429 RGD:1305007 +HGNC:15768 OGFR opioid growth factor receptor protein-coding gene gene with protein product Approved 20q13.33 20q13.33 7-60 2001-05-31 2016-10-05 11054 ENSG00000060491 OTTHUMG00000032937 uc002ydj.4 AF109134 NM_007346 CCDS13504 Q9NZT2 "10677613|26687326" MGI:1919325 RGD:69324 OGFR 606459 +HGNC:40724 OGFR-AS1 OGFR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 OGFR antisense RNA 1 (non-protein coding) 2012-03-07 2012-08-15 2014-11-19 101409261 ENSG00000229873 OTTHUMG00000032933 uc031rum.2 "BQ187924|CA412981" NR_102430 +HGNC:21378 OGFRL1 opioid growth factor receptor like 1 protein-coding gene gene with protein product Approved 6q13 06q13 dJ331H24.1 2003-06-11 2016-07-01 2016-07-01 79627 ENSG00000119900 OTTHUMG00000015000 uc003pfx.2 NM_024576 CCDS34482 Q5TC84 MGI:1917405 RGD:1308498 OGFRL1 +HGNC:50511 OGFRP1 opioid growth factor receptor pseudogene 1 pseudogene pseudogene Approved 22q13.2 22q13.2 2014-05-15 2014-05-15 388906 ENSG00000182057 OTTHUMG00000150700 NR_036498 PGOHUM00000246597 +HGNC:8125 OGG1 8-oxoguanine DNA glycosylase protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "HMMH|HOGG1|OGH1|MUTM" "8-hydroxyguanine DNA glycosylase|OGG1 type 1e|OGG1 type 1d|OGG1 type 1g|OGG1 type 1h" DNA glycosylases 1024 1997-07-22 2016-10-05 4968 ENSG00000114026 OTTHUMG00000097091 uc003bsj.4 U96710 NM_016821 "CCDS2576|CCDS2577|CCDS2578|CCDS2579|CCDS2580|CCDS2581|CCDS43046|CCDS46742" O15527 "9207108|10449904" MGI:1097693 RGD:621168 OGG1 601982 "3.2.2.-|4.2.99.18" +HGNC:8126 OGN osteoglycin protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "mimecan|OIF|SLRR3A" mimecan proteoglycan osteoglycin (osteoinductive factor) Small leucine rich repeat proteoglycans 573 1997-10-31 2007-02-16 2016-10-05 4969 ENSG00000106809 OTTHUMG00000020224 uc004asa.4 AI424992 NM_024416 CCDS6695 P20774 2372374 MGI:109278 RGD:1308171 OGN 602383 +HGNC:8127 OGT O-linked N-acetylglucosamine (GlcNAc) transferase protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "O-GLCNAC|HRNT1|MGC22921|FLJ23071" UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase) "O-linked N-acetylglucosaminyltransferases|Tetratricopeptide repeat domain containing" "446|769" 1998-12-03 2012-05-04 2016-10-05 8473 ENSG00000147162 OTTHUMG00000033316 uc004eaa.3 U77413 "NM_003605|NM_181672" "CCDS14414|CCDS35502" O15294 9083068 MGI:1339639 RGD:62060 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=OGT OGT 300255 2.4.1.255 +HGNC:20300 OIP5 Opa interacting protein 5 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "MIS18B|hMIS18beta|CT86" "MIS18 kinetochore protein homolog B (S. pombe)|cancer/testis antigen 86" 2005-01-12 2016-10-05 11339 ENSG00000104147 OTTHUMG00000130251 uc001znp.3 AF025441 NM_007280 CCDS10074 O43482 "9466265|17199038" MGI:1917895 RGD:1564263 OIP5 606020 +HGNC:43563 OIP5-AS1 OIP5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q15.1 15q15.1 cyrano OIP5 antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2011-11-07 2012-08-15 2014-10-22 729082 ENSG00000247556 OTTHUMG00000172547 uc001zno.4 NR_026757 22196729 RGD:6496122 cyrano +HGNC:29953 OIT3 oncoprotein induced transcript 3 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "LZP|FLJ39116" 2004-04-21 2016-10-05 170392 ENSG00000138315 OTTHUMG00000018444 uc001jte.2 NM_152635 CCDS7318 Q8WWZ8 "12975309|12939600" MGI:1201782 RGD:735082 OIT3 609330 +HGNC:28833 OLA1 Obg like ATPase 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 PTD004 GTPBP9 GTP-binding protein 9 (putative) 2006-08-08 2007-07-27 2016-08-11 2016-08-11 29789 ENSG00000138430 OTTHUMG00000132335 uc002uih.4 NM_013341 "CCDS2255|CCDS42779" Q9NTK5 "17430889|24486488" MGI:1914309 RGD:1307982 OLA1 611175 +HGNC:45274 OLA1P1 Obg-like ATPase 1 pseudogene 1 pseudogene pseudogene Approved 22q13.2 22q13.2 2013-03-18 2013-03-18 246785 ENSG00000213790 OTTHUMG00000151284 NG_001589 PGOHUM00000246342 +HGNC:45277 OLA1P2 Obg-like ATPase 1 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2013-03-18 2016-02-23 106479059 ENSG00000213671 OTTHUMG00000059555 NG_044570 PGOHUM00000294329 +HGNC:45278 OLA1P3 Obg-like ATPase 1 pseudogene 3 pseudogene pseudogene Approved 12q13.2 12q13.2 2013-03-18 2013-03-18 101060020 ENSG00000257966 OTTHUMG00000170206 PGOHUM00000239474 +HGNC:25625 OLAH oleoyl-ACP hydrolase protein-coding gene gene with protein product Approved 10p13 10p13 "FLJ11106|SAST" "oleoyl-acyl-carrier-protein hydrolase|S-acyl fatty acid synthase thioesterase, medium chain" THEDC1 thioesterase domain containing 1 2004-05-27 2006-07-07 2006-07-07 2016-02-23 55301 ENSG00000152463 OTTHUMG00000017724 uc001inu.2 AK001844 NM_018324 "CCDS7106|CCDS31152" Q9NV23 MGI:2139018 RGD:621115 OLAH 3.1.2.14 +HGNC:17187 OLFM1 olfactomedin 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "NOE1|OlfA|AMY|NOELIN" "pancortin|noelin" 2001-12-12 2016-07-22 10439 ENSG00000130558 OTTHUMG00000020897 uc010nar.5 AF035301 NM_014279 "CCDS6986|CCDS6987|CCDS65183|CCDS65184" Q99784 9039501 MGI:1860437 RGD:620320 OLFM1 605366 +HGNC:17189 OLFM2 olfactomedin 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "OlfC|NOE2" noelin 2 2002-01-11 2015-08-25 93145 ENSG00000105088 OTTHUMG00000180390 uc002mmp.4 AF131839 NM_058164 "CCDS12221|CCDS77230" O95897 MGI:3045350 RGD:1309741 OLFM2 +HGNC:17990 OLFM3 olfactomedin 3 protein-coding gene gene with protein product Approved 1p21.1 01p21.1 NOE3 optimedin 2002-01-11 2016-10-05 118427 ENSG00000118733 OTTHUMG00000010941 uc001dug.4 AF397392 XM_017000240 "CCDS30781|CCDS72832" Q96PB7 "12019210|16115881" MGI:2387329 RGD:628672 OLFM3 607567 +HGNC:17190 OLFM4 olfactomedin 4 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "OlfD|GW112|GC1" 2004-06-25 2016-10-05 10562 ENSG00000102837 OTTHUMG00000016981 uc001vhl.4 AY358567 NM_006418 CCDS9440 Q6UX06 MGI:2685142 RGD:1311708 OLFM4 614061 +HGNC:51927 OLFM5P olfactomedin family member 5, pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 2015-10-09 2015-10-09 101927763 ENSG00000224295 OTTHUMG00000066889 NR_133006 MGI:2443346 PGOHUM00000290375 +HGNC:24473 OLFML1 olfactomedin like 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 UNQ564 olfactomedin-like 1 2004-06-25 2015-11-11 2016-10-05 283298 ENSG00000183801 OTTHUMG00000165527 uc001mfi.4 AY358591 NM_198474 CCDS7779 Q6UWY5 MGI:2679264 RGD:1311854 OLFML1 +HGNC:27270 OLFML2A olfactomedin like 2A protein-coding gene gene with protein product Approved 9q33.3 09q33.3 FLJ00237 olfactomedin-like 2A 2004-04-29 2015-11-11 2016-10-05 169611 ENSG00000185585 OTTHUMG00000020663 uc004bov.5 AK092255 NM_182487 "CCDS6857|CCDS65129" Q68BL7 12477932 MGI:2444741 RGD:1311651 OLFML2A 615899 +HGNC:24558 OLFML2B olfactomedin like 2B protein-coding gene gene with protein product Approved 1q23.3 01q23.3 DKFZP586L151 olfactomedin-like 2B 2004-04-29 2015-11-11 2016-10-05 25903 ENSG00000162745 OTTHUMG00000024047 uc001gbu.3 BX648975 NM_015441 "CCDS1236|CCDS72966" Q68BL8 MGI:2443310 RGD:1309257 OLFML2B +HGNC:24956 OLFML3 olfactomedin like 3 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "HNOEL-iso|OLF44" olfactomedin-like 3 2004-05-10 2015-11-11 2016-10-05 56944 ENSG00000116774 OTTHUMG00000011980 uc001eer.3 AF201945 NM_020190 "CCDS870|CCDS65618|CCDS72839" Q9NRN5 MGI:1914877 RGD:1311106 OLFML3 610088 +HGNC:8131 OLFR@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:16983 OLIG1 oligodendrocyte transcription factor 1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "BHLHB6|bHLHe21" "oligodendrocyte-specific bHLH transcription factor 1|oligodendrocyte lineage transcription factor 1|basic domain, helix-loop-helix protein, class B, 6" Basic helix-loop-helix proteins 420 2001-12-04 2016-04-25 116448 ENSG00000184221 OTTHUMG00000065064 uc002yqz.4 AP000109 NM_138983 CCDS42920 Q8TAK6 11526205 MGI:1355334 RGD:621129 OLIG1 606385 +HGNC:9398 OLIG2 oligodendrocyte lineage transcription factor 2 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "RACK17|OLIGO2|bHLHe19" "oligodendrocyte-specific bHLH transcription factor 2|protein kinase C binding protein 2|human protein kinase C-binding protein RACK17|basic domain, helix-loop-helix protein, class B, 1" "PRKCBP2|BHLHB1" protein kinase C binding protein 2 Basic helix-loop-helix proteins 420 1999-10-19 2001-12-07 2001-12-04 2014-11-19 10215 ENSG00000205927 OTTHUMG00000065032 uc002yqx.3 U48250 NM_005806 CCDS13620 Q13516 11526205 MGI:1355331 RGD:1307098 OLIG2 606386 +HGNC:18003 OLIG3 oligodendrocyte transcription factor 3 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "Bhlhb7|bHLHe20" Basic helix-loop-helix proteins 420 2003-05-20 2014-11-19 167826 ENSG00000177468 OTTHUMG00000015657 uc003qhp.2 AK096362 NM_175747 CCDS5186 Q7RTU3 MGI:2149955 RGD:1305997 OLIG3 609323 +HGNC:28060 OLMALINC oligodendrocyte maturation-associated long intergenic non-coding RNA non-coding RNA RNA, long non-coding Approved 10q24.31 10q24.31 "bA34D15.5|FLJ12974|HI-LNC80" "Human Islet Long Non Coding RNA 80|oligodendrocyte maturation-associated long intervening non-coding RNA" "C10orf75|NCRNA00263|LINC00263" "chromosome 10 open reading frame 75|non-protein coding RNA 263|long intergenic non-protein coding RNA 263" Long non-coding RNAs 788 2004-02-17 2015-01-12 2015-01-12 2015-01-12 90271 ENSG00000235823 OTTHUMG00000018909 BC045787 NR_026762 "12477932|23040067" 616240 +HGNC:8133 OLR1 oxidized low density lipoprotein receptor 1 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "LOX-1|SCARE1|CLEC8A" oxidised low density lipoprotein (lectin-like) receptor 1 "C-type lectin domain family|Scavenger receptors" "494|1253" 1998-01-16 2016-03-10 2016-10-05 4973 ENSG00000173391 OTTHUMG00000168527 uc001qxo.2 D89050 NM_002543 "CCDS8618|CCDS53745|CCDS53746" P78380 9763655 MGI:1261434 RGD:620515 OLR1 602601 +HGNC:29661 OMA1 OMA1 zinc metallopeptidase protein-coding gene gene with protein product Approved 1p32.2-p32.1 01p32.2-p32.1 "MPRP-1|YKR087C|ZMPOMA1|FLJ33782" "overlapping activity with M-AAA protease|zinc metallopeptidase OMA1" OMA1 zinc metallopeptidase homolog (S. cerevisiae) 2004-11-16 2013-05-03 2016-10-11 115209 ENSG00000162600 OTTHUMG00000010068 uc001cyy.4 AK091101 NM_145243 CCDS608 Q96E52 12477932 MGI:1914263 RGD:1304821 OMA1 617081 M48.017 +HGNC:8134 OMD osteomodulin protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "osteoadherin|SLRR2C" osteoadherin proteoglycan Small leucine rich repeat proteoglycans 573 1997-11-11 2014-11-18 4958 ENSG00000127083 OTTHUMG00000020225 uc004asd.5 AB000114 NM_005014 CCDS6696 Q99983 MGI:1350918 RGD:621818 OMD +HGNC:8135 OMG oligodendrocyte myelin glycoprotein protein-coding gene gene with protein product Approved 17q11.2 17q11.2 OMGP 1991-06-05 2016-10-05 4974 ENSG00000126861 OTTHUMG00000132870 uc002hgj.4 NM_002544 CCDS11265 P23515 "1899288|2277079" MGI:106586 RGD:1359125 OMG 164345 +HGNC:8136 OMP olfactory marker protein protein-coding gene gene with protein product Approved 11q13.5 11q13.5 1992-12-14 2016-01-15 4975 ENSG00000254550 OTTHUMG00000165193 uc010rsk.2 U01212 NM_006189 CCDS53682 P47874 8499899 MGI:97436 RGD:3231 OMP 164340 +HGNC:8138 ONECUT1 one cut homeobox 1 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 HNF-6 "HNF6|HNF6A" one cut domain, family member 1 CUT class homeoboxes and pseudogenes 527 2000-02-11 2007-07-16 2015-08-25 3175 ENSG00000169856 OTTHUMG00000131899 uc002aci.3 U77975 XM_011521487 CCDS10150 Q9UBC0 "8887657|8790352" MGI:1196423 RGD:2811 ONECUT1 604164 8476 +HGNC:8139 ONECUT2 one cut homeobox 2 protein-coding gene gene with protein product Approved 18q21.31 18q21.31 OC-2 one cut domain, family member 2 CUT class homeoboxes and pseudogenes 527 2000-02-11 2007-07-16 2015-08-25 9480 ENSG00000119547 OTTHUMG00000159776 uc002lgo.4 Y18198 XM_017026096 CCDS42440 O95948 9915796 MGI:1891408 RGD:1564677 ONECUT2 604894 8477 +HGNC:13399 ONECUT3 one cut homeobox 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 one cut domain, family member 3 CUT class homeoboxes and pseudogenes 527 2001-06-25 2007-07-16 2015-08-25 390874 ENSG00000205922 OTTHUMG00000172429 uc010xgr.3 AC004755 NM_001080488 CCDS45900 O60422 9915796 MGI:1891409 RGD:1591005 ONECUT3 611294 8542 +HGNC:21382 OOEP oocyte expressed protein protein-coding gene gene with protein product Approved 6q13 06q13 "Em:AC019205.2|KHDC2" KH homology domain containing 2 C6orf156 "chromosome 6 open reading frame 156|oocyte expressed protein homolog (dog)" 2003-11-26 2007-11-13 2012-02-22 2014-11-19 441161 ENSG00000203907 OTTHUMG00000150057 uc003pgu.5 BC024931 NM_001080507 CCDS47451 A6NGQ2 17913455 MGI:1915218 RGD:1311103 OOEP 611689 +HGNC:39192 OOEP-AS1 OOEP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q13 06q13 OOEP-AS "OOEP antisense RNA (non-protein coding)|OOEP antisense RNA 1 (non-protein coding)" 2010-11-18 2010-11-25 2012-08-15 2012-10-12 106478938 ENSG00000231332 OTTHUMG00000015022 uc063pnx.1 XR_001743868 +HGNC:49233 OOSP1 oocyte secreted protein 1, pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 oocyte secreted protein 1 2013-10-14 2015-03-31 2015-03-31 255649 ENSG00000214788 OTTHUMG00000187492 "AB231701|AB231702" NR_130719 A8MZH6 11747200 MGI:2149290 RGD:1590944 +HGNC:49240 OOSP1P1 oocyte secreted protein 1 pseudogene 1 pseudogene pseudogene Approved 1p34.1 01p34.1 2013-10-14 2013-10-14 106480251 ENSG00000238037 OTTHUMG00000007491 NG_043888 PGOHUM00000243994 +HGNC:49241 OOSP1P2 oocyte secreted protein 1 pseudogene 2 pseudogene pseudogene Approved 17q11.2 17q11.2 2013-10-14 2013-10-14 106480252 ENSG00000263749 OTTHUMG00000179586 NG_043896 PGOHUM00000237027 +HGNC:26699 OOSP2 oocyte secreted protein 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 FLJ36198 "TMEM122|PLAC1L" "transmembrane protein 122|placenta-specific 1-like" 2006-02-02 2013-10-14 2013-10-14 2014-11-19 219990 ENSG00000149507 OTTHUMG00000167379 AK093517 NM_173801 CCDS7979 Q86WS3 12477932 MGI:2684945 RGD:1590948 +HGNC:8140 OPA1 OPA1, mitochondrial dynamin like GTPase protein-coding gene gene with protein product Approved 3q29 03q29 "NTG|KIAA0567|FLJ12460|NPG|MGM1" "mitochondrial dynamin-like GTPase|dynamin-like guanosine triphosphatase|Dynamin-like 120 kDa protein, mitochondrial" optic atrophy 1 (autosomal dominant) 1987-09-11 2016-02-26 2016-10-12 4976 ENSG00000198836 OTTHUMG00000149897 uc003fti.3 AB011139 NM_130837 "CCDS33917|CCDS43186" O60313 9490303 MGI:1921393 RGD:708423 "Mutations of the Optic Atrophy 1 Gene|http://www.retina-international.org/files/sci-news/opa1mut.htm|LRG_337|http://www.lrg-sequence.org/LRG/LRG_337" OPA1 605290 123996 +HGNC:40421 OPA1-AS1 OPA1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 OPA1 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-18 100873941 ENSG00000224855 OTTHUMG00000156072 uc031scv.2 NR_046634 +HGNC:8141 OPA2 optic atrophy 2 (obscure) phenotype phenotype only Approved Xp11.4-p11.2 Xp11.4-p11.2 1990-09-10 2008-05-22 4977 9382106 311050 310868 +HGNC:8142 OPA3 optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia) protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "FLJ22187|MGA3" 1999-03-12 2015-08-25 80207 ENSG00000125741 OTTHUMG00000182125 uc002pck.5 AK025840 XM_006723403 "CCDS12668|CCDS33052" Q9H6K4 "9097959|11668429" MGI:2686271 RGD:1309147 OPA3 606580 124003 +HGNC:32786 OPA4 optic atrophy 4 (autosomal dominant) phenotype phenotype only Approved 18q12.2 18q12.2 2006-05-10 2006-05-10 58156 10369594 605293 +HGNC:32787 OPA5 optic atrophy 5 (autosomal dominant) phenotype phenotype only Approved 22q12.1-q13.1 22q12.1-q13.1 2006-05-10 2011-02-10 692222 15635063 610708 +HGNC:33170 OPA6 optic atrophy 6 (autosomal recessive) phenotype phenotype only Approved 8q21.13-q22.1 08q21.13-q22.1 ROA1 recessive optic atrophy 1 2006-11-10 2007-06-25 777778 14508503 258500 +HGNC:33505 OPA7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:39750 OPA8 optic atrophy 8 (autosomal dominant) phenotype phenotype only Approved 16q22 16q22 2011-03-25 2011-03-25 106783499 21349918 616648 +HGNC:20707 OPALIN oligodendrocytic myelin paranodal and inner loop protein protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "TMP10|HTMP10" TMEM10 transmembrane protein 10 2003-05-07 2008-05-01 2008-05-01 2016-10-05 93377 ENSG00000197430 OTTHUMG00000018831 uc001kmj.5 AF367761 NM_033207 "CCDS7448|CCDS41556|CCDS44466|CCDS60602|CCDS73172|CCDS73173" Q96PE5 "11814680|17442045" MGI:2657025 RGD:1307776 OPALIN +HGNC:8143 OPCML opioid binding protein/cell adhesion molecule like protein-coding gene gene with protein product Approved 11q25 11q25 "OPCM|OBCAM|IGLON1" IgLON family member 1 "I-set domain containing|IgLON cell adhesion molecules" "593|1052" 1993-12-13 2016-06-17 2016-06-17 4978 ENSG00000183715 OTTHUMG00000163658 uc001qgs.4 BX537377 NM_001012393 "CCDS8492|CCDS31722|CCDS81649" Q14982 8244387 MGI:97397 RGD:620635 OPCML 600632 +HGNC:41366 OPCML-IT1 OPCML intronic transcript 1 non-coding RNA RNA, long non-coding Approved 11q25 11q25 OPCML intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874333 ENSG00000254896 OTTHUMG00000167118 uc058jfz.1 +HGNC:41365 OPCML-IT2 OPCML intronic transcript 2 non-coding RNA RNA, long non-coding Approved 11q25 11q25 OPCML intronic transcript 2 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874332 ENSG00000255371 OTTHUMG00000167116 uc058jfw.1 +HGNC:8146 OPEM ophthalmoplegia, external, with myopia phenotype phenotype only Approved X X 2001-06-22 2012-10-02 4981 311000 +HGNC:8148 OPHN1 oligophrenin 1 protein-coding gene gene with protein product Approved Xq12 Xq12 "OPN1|ARHGAP41" MRX60 mental retardation, X-linked 60 "Rho GTPase activating proteins|BAR-PH domain containing" "721|1291" 1998-05-12 2015-08-25 4983 ENSG00000079482 OTTHUMG00000021744 uc004dww.5 AJ001189 NM_002547 CCDS14388 O60890 "9195162|9582072" MGI:2151070 RGD:1563435 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=OPHN1 OPHN1 300127 159936 +HGNC:8149 OPLAH 5-oxoprolinase (ATP-hydrolysing) protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "OPLA|5-Opase" 1999-12-10 2014-11-19 26873 ENSG00000178814 OTTHUMG00000165435 uc033cce.2 "AF024672|AB122018" NM_017570 CCDS75802 O14841 14993790 MGI:1922725 RGD:620956 OPLAH 614243 297456 3.5.2.9 +HGNC:9936 OPN1LW opsin 1 (cone pigments), long-wave-sensitive protein-coding gene gene with protein product Approved Xq28 Xq28 COD5 cone dystrophy 5 (X-linked) "CBBM|RCP|CBP" "color blindness, protan|red cone photoreceptor pigment" Opsin receptors 215 2001-06-22 2008-04-16 2015-09-03 5956 ENSG00000102076 OTTHUMG00000034295 uc033fax.1 Z68193 NM_020061 CCDS14742 P04000 MGI:1097692 Mutations of the Photopigments - Red (RCP), Green (GCP), and Blue Cone Pigment (BCP)|http://www.retina-international.org/files/sci-news/cppmut.htm OPN1LW 300822 124007 +HGNC:4206 OPN1MW opsin 1 (cone pigments), medium-wave-sensitive protein-coding gene gene with protein product Approved Xq28 Xq28 "OPN1MW1|COD5" cone dystrophy 5 (X-linked) "GCP|CBBM|CBD" "color blindness, deutan|green cone photoreceptor pigment" Opsin receptors 215 2001-06-22 2008-04-16 2015-09-03 2652 ENSG00000268221 OTTHUMG00000022652 uc004fkb.4 K03494 NM_000513 CCDS14743 P04001 RGD:620978 Mutations of the Photopigments - Red (RCP), Green (GCP), and Blue Cone Pigment (BCP)|http://www.retina-international.org/files/sci-news/cppmut.htm OPN1MW 300821 124012 +HGNC:26952 OPN1MW2 opsin 1 (cone pigments), medium-wave-sensitive 2 protein-coding gene gene with protein product Approved Xq28 Xq28 Opsin receptors 215 2005-09-20 2015-09-03 728458 ENSG00000166160 OTTHUMG00000024231 uc004fkd.4 NM_001048181 CCDS35447 P0DN77 OPN1MW2 +HGNC:51831 OPN1MW3 opsin 1 (cone pigments), medium-wave-sensitive 3 protein-coding gene gene with protein product Approved Xq28 Xq28 Opsin receptors 215 2015-07-24 2015-07-24 101060233 ENSG00000269433 OTTHUMG00000189499 XM_003960089 CCDS83509 P0DN78 +HGNC:1012 OPN1SW opsin 1 (cone pigments), short-wave-sensitive protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "BOP|CBT" "color blindness, tritan|blue-sensitive opsin" BCP blue cone photoreceptor pigment Opsin receptors 215 2001-06-22 2008-04-16 2015-08-25 611 ENSG00000128617 OTTHUMG00000158311 uc003vnt.5 U53874 NM_001708 CCDS5806 P03999 "2937147|8270261" MGI:99438 RGD:621033 Mutations of the Photopigments - Red (RCP), Green (GCP), and Blue Cone Pigment (BCP)|http://www.retina-international.org/files/sci-news/cppmut.htm OPN1SW 613522 124018 +HGNC:14007 OPN3 opsin 3 protein-coding gene gene with protein product Approved 1q43 01q43 "ERO|NMO-1|encephalopsin|PPP1R116" "panopsin|protein phosphatase 1, regulatory subunit 116" ECPN encephalopsin "Opsin receptors|Protein phosphatase 1 regulatory subunits" "215|694" 2000-11-24 2008-04-16 2014-11-19 23596 ENSG00000054277 OTTHUMG00000039691 uc001hza.4 AF140242 NM_014322 CCDS31072 Q9H1Y3 "10234000|11401433" MGI:1338022 RGD:1594385 OPN3 606695 objectId:160 +HGNC:14449 OPN4 opsin 4 protein-coding gene gene with protein product Approved 10q23.2 10q23.2 "MOP|melanopsin" melanopsin opsin 4 (melanopsin) Opsin receptors 215 2001-08-07 2008-04-16 2016-10-05 94233 ENSG00000122375 OTTHUMG00000018654 uc001kdq.4 AF147788 NM_033282 "CCDS7376|CCDS31237" Q9UHM6 10632589 MGI:1353425 RGD:621701 OPN4 606665 objectId:2758 +HGNC:19992 OPN5 opsin 5 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "neuropsin|dJ402H5.1" neuropsin TMEM13 transmembrane protein 13 Opsin receptors 215 2003-11-26 2004-01-23 2014-11-19 221391 ENSG00000124818 OTTHUMG00000014803 uc003ozc.4 AY288419 NM_181744 CCDS4923 Q6U736 "14623103|14623098" MGI:2662912 RGD:727869 OPN5 609042 objectId:161 +HGNC:8153 OPRD1 opioid receptor delta 1 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 opioid receptor, delta 1 Opioid receptors 245 1993-03-11 2016-03-31 2016-10-05 4985 ENSG00000116329 OTTHUMG00000003646 uc001brf.2 U10504 NM_000911 CCDS329 P41143 8415697 MGI:97438 RGD:3233 OPRD1 165195 objectId:317 +HGNC:8154 OPRK1 opioid receptor kappa 1 protein-coding gene gene with protein product Approved 8q11.23 08q11.23 "KOR|OPRK" opioid receptor, kappa 1 Opioid receptors 245 1993-03-11 2016-03-31 2016-10-05 4986 ENSG00000082556 OTTHUMG00000164276 uc003xri.3 NM_001282904 "CCDS6152|CCDS64895" P41145 8188308 MGI:97439 RGD:69426 OPRK1 165196 objectId:318 +HGNC:8155 OPRL1 opioid related nociceptin receptor 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "NOCIR|ORL1|OOR|KOR-3|NOPr" "LC132 receptor-like|orphanin FQ receptor|kappa3-related opioid receptor|nociceptin/orphanin FQ receptor" opiate receptor-like 1 Opioid receptors 245 1996-05-28 2016-03-31 2016-03-31 4987 ENSG00000125510 OTTHUMG00000033027 uc002yic.4 NM_182647 CCDS13556 P41146 "8137918|17910740" MGI:97440 RGD:68438 OPRL1 602548 objectId:320 +HGNC:8156 OPRM1 opioid receptor mu 1 protein-coding gene gene with protein product Approved 6q25.2 06q25.2 MOR1 opioid receptor, mu 1 Opioid receptors 245 1993-03-11 2016-03-31 2016-10-12 4988 ENSG00000112038 OTTHUMG00000015870 uc063skb.1 L29301 NM_000914 "CCDS43517|CCDS43518|CCDS47503|CCDS47504|CCDS47505|CCDS47506|CCDS47507|CCDS47508|CCDS55071|CCDS55068|CCDS55069|CCDS55070" P35372 MGI:97441 RGD:3234 LRG_1007|http://www.lrg-sequence.org/LRG/LRG_1007 OPRM1 600018 objectId:319 +HGNC:17279 OPRPN opiorphin prepropeptide protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "BPLP|PRL1" PROL1 "proline rich 1|proline rich, lacrimal 1" 2001-12-04 2016-03-08 2016-03-08 2016-03-08 58503 ENSG00000171199 OTTHUMG00000160845 uc003hfi.4 S83198 NM_021225 CCDS43235 Q99935 "8670737|17101991" RGD:620983 608936 +HGNC:8158 OPTC opticin protein-coding gene gene with protein product Approved 1q32.1 01q32.1 oculoglycan 2000-02-16 2016-10-05 26254 ENSG00000188770 OTTHUMG00000036100 uc001gzu.2 AF161702 NM_014359 CCDS1439 Q9UBM4 10636917 MGI:2151113 RGD:1304916 OPTC 605127 +HGNC:17142 OPTN optineurin protein-coding gene gene with protein product Approved 10p13 10p13 "FIP2|HYPL|FIP-2|TFIIIA-INTP|NRP|HIP7" GLC1E glaucoma 1, open angle, E (adult-onset) 2001-11-16 2003-09-08 2016-10-05 10133 ENSG00000123240 OTTHUMG00000017690 uc001ilx.2 AF420371 NM_021980 CCDS7094 Q96CV9 "11834836|9488477" MGI:1918898 RGD:628886 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ OPTN 602432 124021 +HGNC:8179 OR1A1 olfactory receptor family 1 subfamily A member 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OR17-7 olfactory receptor, family 1, subfamily A, member 1 Olfactory receptors, family 1 147 1998-09-14 2015-12-09 2015-12-09 8383 ENSG00000172146 OTTHUMG00000090637 uc010vrc.2 AF087918 NM_014565 CCDS11022 Q9P1Q5 10673334 "MGI:1333770|MGI:3030237" RGD:1332685 OR1A1 OR1A1 +HGNC:8180 OR1A2 olfactory receptor family 1 subfamily A member 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OR17-6 olfactory receptor, family 1, subfamily A, member 2 Olfactory receptors, family 1 147 1999-11-16 2015-12-09 2015-12-09 26189 ENSG00000172150 OTTHUMG00000090638 uc002fvd.1 AF155225 NM_012352 CCDS11021 Q9Y585 10673334 RGD:1334436 OR1A2 OR1A2 +HGNC:14750 OR1AA1P olfactory receptor family 1 subfamily AA member 1 pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 olfactory receptor, family 1, subfamily AA, member 1 pseudogene Olfactory receptors, family 1 147 2001-02-28 2015-12-09 2015-12-09 79312 ENSG00000234288 OTTHUMG00000022408 NG_002238 PGOHUM00000242013 OR1AA1P +HGNC:15390 OR1AB1P olfactory receptor family 1 subfamily AB member 1 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 olfactory receptor, family 1, subfamily AB, member 1 pseudogene Olfactory receptors, family 1 147 2001-03-28 2015-12-09 2015-12-09 81090 ENSG00000267450 OTTHUMG00000182236 AC008894 NG_004627 PGOHUM00000234533 OR1AB1P +HGNC:31243 OR1AC1P olfactory receptor family 1 subfamily AC member 1 pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 olfactory receptor, family 1, subfamily AC, member 1 pseudogene Olfactory receptors, family 1 147 2004-02-26 2015-12-09 2015-12-09 403231 ENSG00000267129 OTTHUMG00000179846 NG_005819 +HGNC:8181 OR1B1 olfactory receptor family 1 subfamily B member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 9q33.2 09q33.2 OR9-B olfactory receptor, family 1, subfamily B, member 1 (gene/pseudogene) Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2016-10-10 347169 ENSG00000280094 OTTHUMG00000020616 uc011lyz.2 AC006313 NM_001004450 Q8NGR6 MGI:3030196 RGD:1333333 OR1B1 OR1B1 +HGNC:8182 OR1C1 olfactory receptor family 1 subfamily C member 1 protein-coding gene gene with protein product Approved 1q44 01q44 "TPCR27|HSTPCR27" olfactory receptor, family 1, subfamily C, member 1 Olfactory receptors, family 1 147 1999-11-16 2015-12-09 2015-12-09 26188 ENSG00000221888 OTTHUMG00000040198 uc010pza.2 X89674 NM_012353 CCDS41481 Q15619 9119360 OR1C1 OR1C1 +HGNC:8183 OR1D2 olfactory receptor family 1 subfamily D member 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OR17-4 OLFR1 olfactory receptor, family 1, subfamily D, member 2 Olfactory receptors, family 1 147 1992-12-04 2015-12-09 2015-12-09 4991 ENSG00000184166 OTTHUMG00000090619 uc010vrb.2 U04678 NM_002548 CCDS11019 P34982 "1370859|1840504" MGI:3030246 RGD:1333845 OR1D2 164342 OR1D2 +HGNC:8184 OR1D3P olfactory receptor family 1 subfamily D member 3 pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 "OR17-23|OR11-13|OR11-22" "OR1D6P|OR1D7P" olfactory receptor, family 1, subfamily D, member 3 pseudogene Olfactory receptors, family 1 147 1998-09-14 2015-12-09 2015-12-09 8384 ENSG00000262106 OTTHUMG00000177805 U04679 NG_002298 "8004088|10673334" OR1D3P +HGNC:8185 OR1D4 olfactory receptor family 1 subfamily D member 4 (gene/pseudogene) protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OR17-30 "olfactory receptor, family 1, subfamily D, member 4|olfactory receptor, family 1, subfamily D, member 4 (gene/pseudogene)" Olfactory receptors, family 1 147 1998-09-14 2015-12-09 2015-12-09 653166 ENSG00000255095 OTTHUMG00000166844 U04681 NM_003552 P47884 "8004088|10673334" OR1D4 PGOHUM00000259201 OR1D4 +HGNC:8186 OR1D5 olfactory receptor family 1 subfamily D member 5 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OR17-31 olfactory receptor, family 1, subfamily D, member 5 Olfactory receptors, family 1 147 1998-09-14 2015-12-09 2015-12-09 8386 ENSG00000262628 OTTHUMG00000177676 uc021tns.1 AF087923 NM_014566 CCDS58499 P58170 10673334 OR1D5 OR1D5 +HGNC:8189 OR1E1 olfactory receptor family 1 subfamily E member 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "OR17-2|HGM071|OR17-32|OR13-66" "OR1E9P|OR1E5|OR1E6" olfactory receptor, family 1, subfamily E, member 1 Olfactory receptors, family 1 147 1998-09-14 2015-12-09 2015-12-09 8387 ENSG00000180016 OTTHUMG00000090643 uc002fvj.2 U04642 NM_003553 CCDS11024 P30953 "8004088|1370859" MGI:109315 OR1E1 OR1E1 +HGNC:8190 OR1E2 olfactory receptor family 1 subfamily E member 2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "OR17-93|OR17-135" OR1E4 olfactory receptor, family 1, subfamily E, member 2 Olfactory receptors, family 1 147 1998-09-14 2015-12-09 2016-10-05 8388 ENSG00000127780 OTTHUMG00000090651 uc010vre.2 U04686 NM_003554 CCDS11026 P47887 "8004088|9500546" MGI:109315 OR1E2 OR1E2 +HGNC:8191 OR1E3 olfactory receptor family 1 subfamily E member 3 (gene/pseudogene) protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OR17-210 OR1E3P "olfactory receptor, family 1, subfamily E, member 3 pseudogene|olfactory receptor, family 1, subfamily E, member 3 (gene/pseudogene)" Olfactory receptors, family 1 147 1998-09-14 2008-06-11 2015-12-09 2015-12-09 8389 ENSG00000142163 OTTHUMG00000177823 U04690 NG_002151 Q8WZA6 "8004088|10673334" PGOHUM00000294240 OR1E3P +HGNC:15410 OR1E7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15411 OR1E8P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8194 OR1F1 olfactory receptor family 1 subfamily F member 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "Olfmf|OR16-36|OR16-37|OR16-88|OR16-89|OR16-90|OLFMF|OR3-145" "OR1F4|OR1F6|OR1F7|OR1F8|OR1F9|OR1F5|OR1F10|OR1F13P" olfactory receptor, family 1, subfamily F, member 1 Olfactory receptors, family 1 147 1998-01-23 2015-12-09 2015-12-09 4992 ENSG00000168124 OTTHUMG00000133153 uc010uwu.3 Y14442 XM_011522506 CCDS10496 O43749 "9288094|9500546" RGD:1334086 OR1F1 603232 OR1F1 +HGNC:8196 OR1F2P olfactory receptor family 1 subfamily F member 2 pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 OLFMF2 "OR1F3P|OR1F2" "olfactory receptor, family 1, subfamily F, member 2|olfactory receptor, family 1, subfamily F, member 2, pseudogene" Olfactory receptors, family 1 147 1999-11-16 2007-11-28 2015-12-09 2015-12-09 26184 ENSG00000203581 OTTHUMG00000177554 AJ003145 NR_002169 Q96R84 9653642 PGOHUM00000293692 OR1F2P +HGNC:14570 OR1F2P entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-09-03 +HGNC:8195 OR1F11 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:13964 OR1F12 olfactory receptor family 1 subfamily F member 12 other unknown Approved 6p22.1 06p22.1 "hs6M1-35P|OR1F12Q" OR1F12P "olfactory receptor, family 1, subfamily F, member 12 pseudogene|olfactory receptor, family 1, subfamily F, member 12" Olfactory receptors, family 1 147 2001-03-05 2008-06-11 2015-12-09 2015-12-09 442179 ENSG00000220721 OTTHUMG00000014506 NG_004691 Q8NHA8 OR1F12 +HGNC:8204 OR1G1 olfactory receptor family 1 subfamily G member 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OR17-209 OR1G2 olfactory receptor, family 1, subfamily G, member 1 Olfactory receptors, family 1 147 1998-09-14 2015-12-09 2015-12-09 8390 ENSG00000183024 OTTHUMG00000090618 uc002fvc.2 U04689 NM_003555 CCDS11020 P47890 "8004088|9500546" RGD:1333596 OR1G1 OR1G1 +HGNC:8206 OR1H1P olfactory receptor family 1 subfamily H member 1 pseudogene pseudogene pseudogene Approved 9q33.2 09q33.2 OST26 OR1H1 olfactory receptor, family 1, subfamily H, member 1 pseudogene Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2015-12-09 26742 ENSG00000228914 OTTHUMG00000020613 NG_004138 PGOHUM00000236765 OR1H1P +HGNC:8207 OR1I1 olfactory receptor family 1 subfamily I member 1 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 "OR1I1P|OR19-20|OR1I1Q" olfactory receptor, family 1, subfamily I, member 1 Olfactory receptors, family 1 147 2000-06-19 2015-12-09 2015-12-09 126370 ENSG00000094661 OTTHUMG00000183206 uc010xoe.3 AC004794 NM_001004713 CCDS32937 O60431 MGI:3031191 RGD:1334246 OR1I1 OR1I1 +HGNC:8208 OR1J1 olfactory receptor family 1 subfamily J member 1 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 hg32 olfactory receptor, family 1, subfamily J, member 1 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2015-12-09 347168 ENSG00000136834 OTTHUMG00000020603 uc011lyu.2 AL353767 NM_001004451 CCDS35120 Q8NGS3 MGI:102697 RGD:1332682 OR1J1 OR1J1 +HGNC:8209 OR1J2 olfactory receptor family 1 subfamily J member 2 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 OST044 "OR1J3|OR1J5" olfactory receptor, family 1, subfamily J, member 2 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2015-12-09 26740 ENSG00000197233 OTTHUMG00000020604 uc011lyv.2 XM_017014623 CCDS35121 Q8NGS2 MGI:3030182 RGD:1333882 OR1J2 OR1J2 +HGNC:8211 OR1J4 olfactory receptor family 1 subfamily J member 4 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "HTPCRX01|HSHTPCRX01" olfactory receptor, family 1, subfamily J, member 4 Olfactory receptors, family 1 147 1999-11-17 2015-12-09 2015-12-09 26219 ENSG00000239590 OTTHUMG00000020606 uc011lyw.2 X64979 NM_001004452 CCDS35122 Q8NGS1 1370859 MGI:3030184 RGD:1333082 OR1J4 OR1J4 +HGNC:8212 OR1K1 olfactory receptor family 1 subfamily K member 1 protein-coding gene gene with protein product Approved 9q33 09q33 "hg99|MNAB" olfactory receptor, family 1, subfamily K, member 1 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2015-12-09 392392 ENSG00000165204 OTTHUMG00000020625 uc011lze.2 AL359512 NM_080859 CCDS35132 Q8NGR3 RGD:1333846 OR1K1 OR1K1 +HGNC:8213 OR1L1 olfactory receptor family 1 subfamily L member 1 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 OR9-C OR1L2 olfactory receptor, family 1, subfamily L, member 1 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2016-04-25 26737 ENSG00000173679 OTTHUMG00000020618 uc022bmz.1 NM_001005236 CCDS35127 Q8NH94 OR1L1 OR1L1 +HGNC:8215 OR1L3 olfactory receptor family 1 subfamily L member 3 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 OR9-D olfactory receptor, family 1, subfamily L, member 3 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2015-12-09 26735 ENSG00000171481 OTTHUMG00000020619 uc011lzb.2 NM_001005234 CCDS35128 Q8NH93 OR1L3 OR1L3 +HGNC:8216 OR1L4 olfactory receptor family 1 subfamily L member 4 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 OR9-E OR1L5 olfactory receptor, family 1, subfamily L, member 4 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2015-12-09 254973 ENSG00000136939 OTTHUMG00000020620 uc004bmu.1 NM_001005235 CCDS35129 Q8NGR5 "MGI:3030198|MGI:3030199" RGD:1332825 OR1L4 OR1L4 +HGNC:8218 OR1L6 olfactory receptor family 1 subfamily L member 6 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 OR1L7 olfactory receptor, family 1, subfamily L, member 6 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2016-04-25 392390 ENSG00000171459 OTTHUMG00000020621 uc022bna.1 NM_001004453 CCDS35130 Q8NGR2 "MGI:3030198|MGI:3030199" RGD:1332944 OR1L6 OR1L6 +HGNC:15110 OR1L8 olfactory receptor family 1 subfamily L member 8 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 olfactory receptor, family 1, subfamily L, member 8 Olfactory receptors, family 1 147 2001-03-28 2015-12-09 2015-12-09 138881 ENSG00000171496 OTTHUMG00000020609 uc004bmp.1 XM_017014284 CCDS35124 Q8NGR8 MGI:3030189 RGD:1333496 OR1L8 OR1L8 +HGNC:8220 OR1M1 olfactory receptor family 1 subfamily M member 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 OR19-6 olfactory receptor, family 1, subfamily M, member 1 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2015-12-09 125963 ENSG00000170929 OTTHUMG00000179930 uc010xkj.3 NM_001004456 CCDS32896 Q8NGA1 MGI:109311 RGD:1333021 OR1M1 OR1M1 +HGNC:31244 OR1M4P olfactory receptor family 1 subfamily M member 4 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 olfactory receptor, family 1, subfamily M, member 4 pseudogene Olfactory receptors, family 1 147 2004-02-26 2015-12-09 2015-12-09 403232 ENSG00000267154 OTTHUMG00000179929 NG_004407 PGOHUM00000263002 OR1M4P +HGNC:8221 OR1N1 olfactory receptor family 1 subfamily N member 1 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 OR1-26 OR1N3 olfactory receptor, family 1, subfamily N, member 1 Olfactory receptors, family 1 147 1999-11-17 2015-12-09 2016-10-05 138883 ENSG00000171505 OTTHUMG00000020608 uc004bmn.1 U86216 NM_012363 CCDS6844 Q8NGS0 9500546 "MGI:3030185|MGI:3030187" RGD:621629 OR1N1 OR1N1 +HGNC:15111 OR1N2 olfactory receptor family 1 subfamily N member 2 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 olfactory receptor, family 1, subfamily N, member 2 Olfactory receptors, family 1 147 2001-03-28 2015-12-09 2015-12-09 138882 ENSG00000171501 OTTHUMG00000020607 uc064vnb.1 NM_001004457 CCDS35123 Q8NGR9 MGI:3030188 RGD:1333103 OR1N2 OR1N2 +HGNC:8222 OR1P1 olfactory receptor family 1 subfamily P member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 17p13.3 17p13.3 OR17-208 OR1P1P "olfactory receptor, family 1, subfamily P, member 1 pseudogene|olfactory receptor, family 1, subfamily P, member 1 (gene/pseudogene)" Olfactory receptors, family 1 147 1998-09-14 2008-06-11 2015-12-09 2015-12-09 8391 ENSG00000262085 OTTHUMG00000177731 AF087927 NG_002153 Q8NH06 10673334 MGI:3030240 RGD:1332804 OR1P1P +HGNC:8223 OR1Q1 olfactory receptor family 1 subfamily Q member 1 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "OST226|OR9-A|HSTPCR106|OST226OR9-A|TPCR106" "OR1Q2|OR1Q3" olfactory receptor, family 1, subfamily Q, member 1 Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2015-12-09 158131 ENSG00000165202 OTTHUMG00000020615 uc011lyy.2 NM_012364 CCDS35125 Q15612 MGI:3030191 RGD:1333656 OR1Q1 OR1Q1 +HGNC:8226 OR1R1P olfactory receptor family 1 subfamily R member 1 pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 OR17-1 "OR20A1P|OR1R2P|OR1R3P" olfactory receptor, family 1, subfamily R, member 1 pseudogene Olfactory receptors, family 1 147 1998-09-14 2015-12-09 2015-12-09 9596 ENSG00000180042 OTTHUMG00000177732 NG_002302 10673334 OR1R1P +HGNC:8227 OR1S1 olfactory receptor family 1 subfamily S member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OST034 olfactory receptor, family 1, subfamily S, member 1 (gene/pseudogene) Olfactory receptors, family 1 147 1999-12-09 2015-12-09 2016-10-10 219959 ENSG00000280204 OTTHUMG00000167463 uc010rkc.2 BK004299 NM_001004458 Q8NH92 MGI:3031330 RGD:1333888 OR1S1 OR1S1 +HGNC:15141 OR1S2 olfactory receptor family 1 subfamily S member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 1, subfamily S, member 2 Olfactory receptors, family 1 147 2001-03-28 2015-12-09 2015-12-09 219958 ENSG00000197887 OTTHUMG00000167541 uc010rkb.3 BK004297 NM_001004459 CCDS31545 Q8NGQ3 MGI:3031330 OR1S2 OR1S2 +HGNC:15062 OR1X1P olfactory receptor family 1 subfamily X member 1 pseudogene pseudogene pseudogene Approved 5q35.2 05q35.2 olfactory receptor, family 1, subfamily X, member 1 pseudogene Olfactory receptors, family 1 147 2001-03-28 2015-12-09 2015-12-09 402236 ENSG00000272494 OTTHUMG00000185807 AC008454 NG_004630 PGOHUM00000235843 OR1X1P +HGNC:31245 OR1X5P olfactory receptor family 1 subfamily X member 5 pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 olfactory receptor, family 1, subfamily X, member 5 pseudogene Olfactory receptors, family 1 147 2004-02-26 2015-12-09 2015-12-09 402240 ENSG00000214351 OTTHUMG00000154337 NG_004631 PGOHUM00000235471 OR1X5P +HGNC:8229 OR2A1 olfactory receptor family 2 subfamily A member 1 protein-coding gene gene with protein product Approved 7q35 07q35 olfactory receptor, family 2, subfamily A, member 1 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 346528 ENSG00000221970 OTTHUMG00000158005 uc011kud.2 NM_001005287 CCDS43673 Q8NGT9 MGI:3030269 RGD:1332872 OR2A1 OR2A1 +HGNC:49168 OR2A1-AS1 OR2A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q35 07q35 2013-09-20 2013-09-20 101928492 ENSG00000244479 OTTHUMG00000158050 BC040701 NR_126023 +HGNC:8230 OR2A2 olfactory receptor family 2 subfamily A member 2 protein-coding gene gene with protein product Approved 7q35 07q35 OST008 "OR2A2P|OR2A17P" olfactory receptor, family 2, subfamily A, member 2 Olfactory receptors, family 2 149 1999-12-09 2004-03-10 2015-12-09 2015-12-09 442361 ENSG00000221989 OTTHUMG00000158001 uc011ktz.3 NM_001005480 CCDS43671 Q6IF42 RGD:1587195 OR2A2 OR2A2 +HGNC:8231 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene pseudogene pseudogene Approved 7q35 07q35 olfactory receptor, family 2, subfamily A, member 3 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 202861 ENSG00000183122 OTTHUMG00000158011 NG_004292 PGOHUM00000233625 OR2A3P +HGNC:14729 OR2A4 olfactory receptor family 2 subfamily A member 4 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 OR2A10 "olfactory receptor, family 2, subfamily A, member 10|olfactory receptor, family 2, subfamily A, member 4" Olfactory receptors, family 2 149 2001-02-28 2015-12-09 2016-10-05 79541 ENSG00000180658 OTTHUMG00000016316 uc011ecd.2 AC005587 NM_030908 CCDS5149 O95047 MGI:104812 OR2A4 OR2A4 +HGNC:8232 OR2A5 olfactory receptor family 2 subfamily A member 5 protein-coding gene gene with protein product Approved 7q35 07q35 "OR7-138|OR7-141" "OR2A8|OR2A26" olfactory receptor, family 2, subfamily A, member 5 Olfactory receptors, family 2 149 1999-11-17 2015-12-09 2015-12-09 393046 ENSG00000221836 OTTHUMG00000158006 uc011ktw.3 U86278 NM_012365 CCDS43668 Q96R48 9500546 MGI:3030282 RGD:1334415 OR2A5 OR2A5 +HGNC:8234 OR2A7 olfactory receptor family 2 subfamily A member 7 protein-coding gene gene with protein product Approved 7q35 07q35 HSDJ0798C17 olfactory receptor, family 2, subfamily A, member 7 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 401427 ENSG00000243896 OTTHUMG00000158002 uc011kuc.3 NM_001005328 CCDS55177 Q96R45 MGI:104812 RGD:1334209 OR2A7 OR2A7 +HGNC:8236 OR2A9P olfactory receptor family 2 subfamily A member 9 pseudogene pseudogene pseudogene Approved 7q35 07q35 HSDJ0798C17 OR2A9 olfactory receptor, family 2, subfamily A, member 9 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 441295 ENSG00000228960 OTTHUMG00000157998 NR_002157 PGOHUM00000250975 OR2A9P +HGNC:15081 OR2A11P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15082 OR2A12 olfactory receptor family 2 subfamily A member 12 protein-coding gene gene with protein product Approved 7q35 07q35 OR2A12P "olfactory receptor, family 2, subfamily A, member 12 pseudogene|olfactory receptor, family 2, subfamily A, member 12" Olfactory receptors, family 2 149 2001-03-28 2002-11-13 2015-12-09 2015-12-09 346525 ENSG00000221858 OTTHUMG00000157996 uc011kty.3 NM_001004135 CCDS43670 Q8NGT7 MGI:3030280 OR2A12 OR2A12 +HGNC:15083 OR2A13P olfactory receptor family 2 subfamily A member 13 pseudogene pseudogene pseudogene Approved 7q35 07q35 olfactory receptor, family 2, subfamily A, member 13 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 392140 ENSG00000273234 OTTHUMG00000154312 NG_004375 PGOHUM00000233624 OR2A13P +HGNC:15084 OR2A14 olfactory receptor family 2 subfamily A member 14 protein-coding gene gene with protein product Approved 7q35 07q35 OST182 "OR2A14P|OR2A6" olfactory receptor, family 2, subfamily A, member 14 Olfactory receptors, family 2 149 2001-03-28 2004-03-08 2015-12-09 2015-12-09 135941 ENSG00000221938 OTTHUMG00000158003 uc011kua.3 NM_001001659 CCDS43672 Q96R47 MGI:3030071 RGD:1333098 OR2A14 OR2A14 +HGNC:15085 OR2A15P olfactory receptor family 2 subfamily A member 15 pseudogene pseudogene pseudogene Approved 7q35 07q35 OR2A28P olfactory receptor, family 2, subfamily A, member 15 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 135942 ENSG00000239981 OTTHUMG00000157999 NG_004290 PGOHUM00000233058 OR2A15P +HGNC:15046 OR2A16P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15334 OR2A18P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15412 OR2A19 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15413 OR2A20P olfactory receptor family 2 subfamily A member 20 pseudogene pseudogene pseudogene Approved 7q35 07q35 OR2A20 olfactory receptor, family 2, subfamily A, member 20 pseudogene Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 401428 ENSG00000170356 OTTHUMG00000158000 AI084964 NR_002158 OR2A20P +HGNC:15414 OR2A21 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15415 OR2A22P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:19551 OR2A23P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:19554 OR2A24P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:19562 OR2A25 olfactory receptor family 2 subfamily A member 25 protein-coding gene gene with protein product Approved 7q35 07q35 "OR2A25P|OR2A27" olfactory receptor, family 2, subfamily A, member 25 Olfactory receptors, family 2 149 2002-11-04 2004-03-10 2015-12-09 2015-12-09 392138 ENSG00000221933 OTTHUMG00000158013 uc011ktx.3 NM_001004488 CCDS43669 A4D2G3 MGI:3030281 RGD:1332716 OR2A25 OR2A25 +HGNC:31246 OR2A41P olfactory receptor family 2 subfamily A member 41 pseudogene pseudogene pseudogene Approved 7q35 07q35 olfactory receptor, family 2, subfamily A, member 41 pseudogene Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 403234 ENSG00000239967 OTTHUMG00000158014 NG_004408 OR2A41P +HGNC:31230 OR2A42 olfactory receptor family 2 subfamily A member 42 protein-coding gene gene with protein product Approved 7q35 07q35 olfactory receptor, family 2, subfamily A, member 42 Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 402317 ENSG00000212807 OTTHUMG00000157995 uc011kub.2 NM_001001802 CCDS56515 Q8NGT9 MGI:3030269 OR2A42 OR2A42 +HGNC:14749 OR2AD1P olfactory receptor family 2 subfamily AD member 1 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 "OR2AD1|hs6M1-8P" olfactory receptor, family 2, subfamily AD, member 1 pseudogene Olfactory receptors, family 2 149 2001-02-28 2015-12-09 2015-12-09 79313 ENSG00000223677 OTTHUMG00000031262 Z84476 NG_002239 OR2AD1P +HGNC:15087 OR2AE1 olfactory receptor family 2 subfamily AE member 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 OR2AE2 "olfactory receptor, family 2, subfamily AE, member 2|olfactory receptor, family 2, subfamily AE, member 1" Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81392 ENSG00000244623 OTTHUMG00000156650 uc003usc.2 AC011904 NM_001005276 CCDS34696 Q8NHA4 OR2AE1 OR2AE1 +HGNC:14719 OR2AF1P olfactory receptor family 2 subfamily AF member 1 pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 OR2AF2P olfactory receptor, family 2, subfamily AF, member 1 pseudogene Olfactory receptors, family 2 149 2001-02-28 2015-12-09 2015-12-09 79331 ENSG00000235730 OTTHUMG00000022414 NG_002257 PGOHUM00000242016 OR2AF1P +HGNC:15142 OR2AG1 olfactory receptor family 2 subfamily AG member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR2AG3 olfactory receptor, family 2, subfamily AG, member 1 (gene/pseudogene) Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2016-10-10 144125 ENSG00000279486 OTTHUMG00000165735 uc057yod.1 AB065823 NM_001004489 CCDS31414 Q9H205 "MGI:3030528|MGI:3030539" RGD:1332882 OR2AG1 OR2AG1 +HGNC:15143 OR2AG2 olfactory receptor family 2 subfamily AG member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR2AG2P olfactory receptor, family 2, subfamily AG, member 2 Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 338755 ENSG00000188124 OTTHUMG00000165868 uc001meq.2 AB065539 NM_001004490 CCDS31413 A6NM03 "MGI:3030535|MGI:3030540" OR2AG2 OR2AG2 +HGNC:15144 OR2AH1P olfactory receptor family 2 subfamily AH member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 2, subfamily AH, member 1 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81336 ENSG00000232511 OTTHUMG00000154208 NG_004244 PGOHUM00000242282 OR2AH1P +HGNC:15063 OR2AI1P olfactory receptor family 2 subfamily AI member 1 pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 olfactory receptor, family 2, subfamily AI, member 1 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 134082 ENSG00000236791 OTTHUMG00000163300 AC025336 NG_004289 PGOHUM00000251349 OR2AI1P +HGNC:15001 OR2AJ1 olfactory receptor family 2 subfamily AJ member 1 other unknown Approved 1q44 01q44 OR2AJ1Q OR2AJ1P "olfactory receptor, family 2, subfamily AJ, member 1 pseudogene|olfactory receptor, family 2, subfamily AJ, member 1" Olfactory receptors, family 2 149 2001-03-28 2004-03-05 2015-12-09 2015-12-09 127608 ENSG00000177275 OTTHUMG00000040206 uc057raw.1 NG_004652 Q8NGZ0 RGD:1333751 OR2AJ1 OR2AJ1 +HGNC:19569 OR2AK2 olfactory receptor family 2 subfamily AK member 2 protein-coding gene gene with protein product Approved 1q44 01q44 OR2AK1P olfactory receptor, family 2, subfamily AK, member 2 Olfactory receptors, family 2 149 2002-11-04 2015-12-09 2015-12-09 391191 ENSG00000187080 OTTHUMG00000040201 uc010pzd.3 BK004457 NM_001004491 CCDS31102 Q8NG84 "MGI:3030150|MGI:3030152|MGI:3030155" OR2AK2 OR2AK2 +HGNC:14712 OR2AL1P olfactory receptor family 2 subfamily AL member 1 pseudogene pseudogene pseudogene Approved 11q22.3 11q22.3 olfactory receptor, family 2, subfamily AL, member 1 pseudogene Olfactory receptors, family 2 149 2001-02-28 2015-12-09 2015-12-09 79547 ENSG00000254767 OTTHUMG00000166222 AC017094 NG_002273 PGOHUM00000242462 OR2AL1P +HGNC:15113 OR2AM1P olfactory receptor family 2 subfamily AM member 1 pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 olfactory receptor, family 2, subfamily AM, member 1 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81366 ENSG00000236110 OTTHUMG00000019895 NG_004255 PGOHUM00000236453 OR2AM1P +HGNC:15114 OR2AN1P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:31247 OR2AO1P olfactory receptor family 2 subfamily AO member 1 pseudogene pseudogene pseudogene Approved 7q35 07q35 olfactory receptor, family 2, subfamily AO, member 1 pseudogene Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 403235 ENSG00000240621 OTTHUMG00000158012 NG_004409 PGOHUM00000233626 OR2AO1P +HGNC:15335 OR2AP1 olfactory receptor family 2 subfamily AP member 1 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 OR2AP1P "olfactory receptor, family 2, subfamily AP, member 1 pseudogene|olfactory receptor, family 2, subfamily AP, member 1" Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 121129 ENSG00000179615 OTTHUMG00000169960 uc031qhr.1 BK004260 NM_001258285 CCDS58241 Q8NGE2 "MGI:3030599|MGI:3030601" RGD:1332910 OR2AP1 OR2AP1 +HGNC:15003 OR2AQ1P olfactory receptor family 2 subfamily AQ member 1 pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 olfactory receptor, family 2, subfamily AQ, member 1 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81474 ENSG00000229724 OTTHUMG00000022769 AP002534 NG_004276 OR2AQ1P +HGNC:15004 OR2AS1P olfactory receptor family 2 subfamily AS member 1 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 2, subfamily AS, member 1 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81473 ENSG00000227102 OTTHUMG00000040385 NG_004705 PGOHUM00000244546 OR2AS1P +HGNC:31248 OR2AS2P olfactory receptor family 2 subfamily AS member 2 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 2, subfamily AS, member 2 pseudogene Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 403236 ENSG00000271934 OTTHUMG00000185769 NG_004706 PGOHUM00000245308 OR2AS2P +HGNC:15145 OR2AT1P olfactory receptor family 2 subfamily AT member 1 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 olfactory receptor, family 2, subfamily AT, member 1 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 390225 ENSG00000254475 OTTHUMG00000165421 AP001972 NG_004338 PGOHUM00000242371 OR2AT1P +HGNC:19619 OR2AT2P olfactory receptor family 2 subfamily AT member 2 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 olfactory receptor, family 2, subfamily AT, member 2 pseudogene Olfactory receptors, family 2 149 2002-11-04 2015-12-09 2016-10-05 390224 ENSG00000234611 OTTHUMG00000154334 NG_004337 PGOHUM00000242369 OR2AT2P +HGNC:19620 OR2AT4 olfactory receptor family 2 subfamily AT member 4 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 olfactory receptor, family 2, subfamily AT, member 4 Olfactory receptors, family 2 149 2002-11-04 2015-12-09 2015-12-09 341152 ENSG00000171561 OTTHUMG00000165370 uc010rro.3 BK004820 NM_001005285 CCDS31639 A6NND4 MGI:3030354 RGD:1333428 OR2AT4 OR2AT4 +HGNC:13966 OR2B2 olfactory receptor family 2 subfamily B member 2 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "hs6M1-10|OR6-1|OR2B2Q" OR2B9 "olfactory receptor, family 2, subfamily B, member 9|olfactory receptor, family 2, subfamily B, member 2" Olfactory receptors, family 2 149 2001-04-03 2015-12-09 2016-10-05 81697 ENSG00000168131 OTTHUMG00000014495 uc011dkw.2 Z98744 NM_033057 CCDS4641 Q9GZK3 MGI:3031193 RGD:621794 OR2B2 OR2B2 +HGNC:8238 OR2B3 olfactory receptor family 2 subfamily B member 3 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 OR6-4 OR2B3P "olfactory receptor, family 2, subfamily B, member 3 pseudogene|olfactory receptor, family 2, subfamily B, member 3" Olfactory receptors, family 2 149 1999-12-09 2008-10-22 2015-12-09 2016-10-05 442184 ENSG00000204703 OTTHUMG00000031226 uc003nlx.4 NM_001005226 CCDS34358 O76000 OR2B3 OR2B3 +HGNC:8239 OR2B4P olfactory receptor family 2 subfamily B member 4 pseudogene pseudogene pseudogene Approved 6p22.2-p21.32 06p22.2-p21.32 hs6M1-22 olfactory receptor, family 2, subfamily B, member 4 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 442190 ENSG00000197171 OTTHUMG00000031195 NG_004686 OR2B4P +HGNC:8241 OR2B6 olfactory receptor family 2 subfamily B member 6 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "OR6-31|dJ408B20.2|OR5-40|OR5-41" "OR2B6P|OR2B1|OR2B1P|OR2B5" olfactory receptor, family 2, subfamily B, member 6 Olfactory receptors, family 2 149 1999-11-17 2015-12-09 2015-12-09 26212 ENSG00000124657 OTTHUMG00000014497 uc011dkx.2 U86275 NM_012367 CCDS4642 P58173 9500546 MGI:104715 OR2B6 OR2B6 +HGNC:13967 OR2B7P olfactory receptor family 2 subfamily B member 7 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 hs6M1-31P olfactory receptor, family 2, subfamily B, member 7 pseudogene Olfactory receptors, family 2 149 2001-04-03 2015-12-09 2015-12-09 81695 ENSG00000187763 OTTHUMG00000014504 NG_004280 PGOHUM00000243538 OR2B7P +HGNC:13968 OR2B8P olfactory receptor family 2 subfamily B member 8 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 hs6M1-29P OR2B8 olfactory receptor, family 2, subfamily B, member 8 pseudogene Olfactory receptors, family 2 149 2001-02-08 2004-03-10 2015-12-09 2015-12-09 65944 ENSG00000182477 OTTHUMG00000014507 NG_003194 P59922 PGOHUM00000243099 OR2B8P +HGNC:31249 OR2B11 olfactory receptor family 2 subfamily B member 11 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily B, member 11 Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 127623 ENSG00000177535 OTTHUMG00000040572 uc010pyx.2 NM_001004492 CCDS31090 Q5JQS5 MGI:3030056 RGD:1333777 OR2B11 OR2B11 +HGNC:31250 OR2BH1P olfactory receptor family 2 subfamily BH member 1 pseudogene pseudogene pseudogene Approved 11p14.1 11p14.1 olfactory receptor, family 2, subfamily BH, member 1 pseudogene Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 403238 ENSG00000272882 OTTHUMG00000186077 NG_004410 PGOHUM00000242625 OR2BH1P +HGNC:8242 OR2C1 olfactory receptor family 2 subfamily C member 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 OLFmf3 OR2C2P olfactory receptor, family 2, subfamily C, member 1 Olfactory receptors, family 2 149 1998-06-25 2015-12-09 2015-12-09 4993 ENSG00000168158 OTTHUMG00000090505 uc002cuw.2 AF098664 NM_012368 CCDS10502 O95371 9847080 MGI:106182 RGD:1334376 OR2C1 OR2C1 +HGNC:15005 OR2C3 olfactory receptor family 2 subfamily C member 3 protein-coding gene gene with protein product Approved 1q44 01q44 OST742 "OR2C4|OR2C5P" "olfactory receptor, family 2, subfamily C, member 4|olfactory receptor, family 2, subfamily C, member 3" Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81472 ENSG00000196242 OTTHUMG00000040579 uc009xgy.3 BC030717 NM_198074 CCDS1634 Q8N628 OR2C3 OR2C3 +HGNC:8244 OR2D2 olfactory receptor family 2 subfamily D member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "OR11-610|hg27" OR2D1 olfactory receptor, family 2, subfamily D, member 2 Olfactory receptors, family 2 149 1998-11-09 2015-12-09 2015-12-09 120776 ENSG00000166368 OTTHUMG00000165741 uc010rau.3 AB065824 NM_003700 CCDS31416 Q9H210 9787077 MGI:3030549 RGD:1333500 OR2D2 608494 OR2D2 +HGNC:15146 OR2D3 olfactory receptor family 2 subfamily D member 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 2, subfamily D, member 3 Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 120775 ENSG00000178358 OTTHUMG00000165742 uc010rav.3 BK004294 NM_001004684 CCDS31417 Q8NGH3 "MGI:3030541|MGI:3030543|MGI:3031366" RGD:1333621 OR2D3 OR2D3 +HGNC:15507 OR2E1P olfactory receptor family 2 subfamily E member 1 pseudogene pseudogene pseudogene Approved 6p22-p21.3 06p22-p21.3 "hs6M1-9|hs6M1-9p|HS29K1|HSNH0569I24" "OR2E1|OR2E2" olfactory receptor, family 2, subfamily E, member 1 pseudogene Olfactory receptors, family 2 149 2001-04-06 2015-12-09 2015-12-09 26719 ENSG00000219262 OTTHUMG00000014523 AC005678 NG_004088 OR2E1P +HGNC:8246 OR2F1 olfactory receptor family 2 subfamily F member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 7q35 07q35 "OLF3|OR7-140|OR7-139|OR14-60" "OR2F4|OR2F5|OR2F3|OR2F3P" "olfactory receptor, family 2, subfamily F, member 1|olfactory receptor, family 2, subfamily F, member 1 (gene/pseudogene)" Olfactory receptors, family 2 149 1999-11-17 2015-12-09 2015-12-09 26211 ENSG00000213215 OTTHUMG00000157771 uc003wds.1 U56421 XM_011516020 Q13607 9500546 "MGI:1313140|MGI:3030287" OR2F1 608497 OR2F1 +HGNC:8247 OR2F2 olfactory receptor family 2 subfamily F member 2 protein-coding gene gene with protein product Approved 7q35 07q35 OR7-1 olfactory receptor, family 2, subfamily F, member 2 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2016-10-05 135948 ENSG00000221910 OTTHUMG00000157768 uc011ktv.3 NM_001004685 CCDS43666 O95006 MGI:3030286 RGD:1333950 OR2F2 OR2F2 +HGNC:8251 OR2G1P olfactory receptor family 2 subfamily G member 1 pseudogene pseudogene pseudogene Approved 6p22.2-p21.32 06p22.2-p21.32 "OST619|hs6M1-25" olfactory receptor, family 2, subfamily G, member 1 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 26717 ENSG00000213911 OTTHUMG00000031115 NG_004689 OR2G1P +HGNC:15007 OR2G2 olfactory receptor family 2 subfamily G member 2 protein-coding gene gene with protein product Approved 1q44 01q44 "olfactory receptor, family 2, subfamily G, member 2 pseudogene|olfactory receptor, family 2, subfamily G, member 2" Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81470 ENSG00000177489 OTTHUMG00000040575 uc010pyy.2 BK004472 NM_001001915 CCDS31092 Q8NGZ5 OR2G2 OR2G2 +HGNC:15008 OR2G3 olfactory receptor family 2 subfamily G member 3 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily G, member 3 Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81469 ENSG00000177476 OTTHUMG00000040576 uc010pyz.2 BK004417 NM_001001914 CCDS31093 Q8NGZ4 OR2G3 OR2G3 +HGNC:27019 OR2G6 olfactory receptor family 2 subfamily G member 6 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily G, member 6 Olfactory receptors, family 2 149 2005-03-07 2015-12-09 2015-12-09 391211 ENSG00000188558 OTTHUMG00000040462 uc001ien.1 XM_372842 CCDS31119 Q5TZ20 MGI:3031217 RGD:735025 OR2G6 OR2G6 +HGNC:8252 OR2H1 olfactory receptor family 2 subfamily H member 1 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 OR6-2 "OR2H6|OR2H8" "olfactory receptor, family 2, subfamily H, member 8|olfactory receptor, family 2, subfamily H, member 1" Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 26716 ENSG00000204688 OTTHUMG00000031050 uc063mnb.1 AF044491 XM_017010737 CCDS4660 Q9GZK4 "MGI:2177474|MGI:2177476" OR2H1 OR2H1 +HGNC:8253 OR2H2 olfactory receptor family 2 subfamily H member 2 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 hs6M1-12 olfactory receptor, family 2, subfamily H, member 2 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2016-01-15 7932 ENSG00000204657 OTTHUMG00000031052 uc003nmr.2 XM_011514912 CCDS34365 O95918 "MGI:2177473|MGI:2177475" RGD:1332876 OR2H2 600578 OR2H2 +HGNC:8254 OR2H3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8255 OR2H4P olfactory receptor family 2 subfamily H member 4 pseudogene pseudogene pseudogene Approved 6p22.2-p21.31 06p22.2-p21.31 "OR6-3|OR2H4|hs6M1-7|dJ80I19.6" olfactory receptor, family 2, subfamily H, member 4 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 442189 ENSG00000230598 OTTHUMG00000031233 NG_004685 OR2H4P +HGNC:8256 OR2H5P olfactory receptor family 2 subfamily H member 5 pseudogene pseudogene pseudogene Approved 6p22.2-p21.31 06p22.2-p21.31 "OR2H5|hs6M1-13|HS271M21" olfactory receptor, family 2, subfamily H, member 5 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 26713 ENSG00000232173 OTTHUMG00000031261 AF042075 NG_002319 OR2H5P +HGNC:15069 OR2H7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8258 OR2I1P olfactory receptor family 2 subfamily I member 1 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 HS6M1-14 "OR2I1|OR2I3P|OR2I4P|OR2I2" olfactory receptor, family 2, subfamily I, member 1 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 442197 ENSG00000237988 OTTHUMG00000031230 AC004179 NG_004688 Q8NGU4 PGOHUM00000243555 OR2I1P +HGNC:15419 OR2I5P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15420 OR2I6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15421 OR2I7P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15422 OR2I8P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15423 OR2I9P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8259 OR2J1 olfactory receptor family 2 subfamily J member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "OR6-5|hs6M1-4|dJ80I19.2" OR2J1P "olfactory receptor, family 2, subfamily J, member 1 pseudogene|olfactory receptor, family 2, subfamily J, member 1|olfactory receptor, family 2, subfamily J, member 1 (gene/pseudogene)" Olfactory receptors, family 2 149 1999-12-09 2004-05-28 2015-12-09 2016-10-05 442185 ENSG00000204702 OTTHUMG00000031280 uc063mmp.1 NG_004683 Q9GZK6 OR2J1 OR2J1P +HGNC:8260 OR2J2 olfactory receptor family 2 subfamily J member 2 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "OR6-8|hs6M1-6|dJ80I19.4" olfactory receptor, family 2, subfamily J, member 2 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2016-10-05 26707 ENSG00000204700 OTTHUMG00000031091 uc032yna.2 NM_030905 CCDS43434 O76002 RGD:1333177 OR2J2 OR2J2 +HGNC:8261 OR2J3 olfactory receptor family 2 subfamily J member 3 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 OR6-6 olfactory receptor, family 2, subfamily J, member 3 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2016-10-05 442186 ENSG00000204701 OTTHUMG00000031092 uc011dll.4 NM_001005216 CCDS43433 O76001 MGI:2177520 OR2J3 615016 OR2J3 +HGNC:8262 OR2J4P olfactory receptor family 2 subfamily J member 4 pseudogene pseudogene pseudogene Approved 6p22.2-p21.31 06p22.2-p21.31 "OR6-9|hs6M1-5|dJ80I19.5" olfactory receptor, family 2, subfamily J, member 4 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 442188 ENSG00000224233 OTTHUMG00000031062 NG_004684 OR2J4P +HGNC:8263 OR2K1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8264 OR2K2 olfactory receptor family 2 subfamily K member 2 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "HTPCRH06|HSHTPCRH06" OR2AR1P olfactory receptor, family 2, subfamily K, member 2 Olfactory receptors, family 2 149 1999-11-19 2015-12-09 2015-12-09 26248 ENSG00000171133 OTTHUMG00000020488 uc011lwp.2 X64977 NM_205859 CCDS6778 Q8NGT1 "1370859|17010214" MGI:3030101 RGD:1332920 OR2K2 OR2K2 +HGNC:8265 OR2L1P olfactory receptor family 2 subfamily L member 1 pseudogene pseudogene pseudogene Approved 1q44 01q44 "HTPCRX02|HSHTPCRX02" "OR2L1|OR2L7P" olfactory receptor, family 2, subfamily L, member 1 pseudogene Olfactory receptors, family 2 149 1999-11-19 2004-03-10 2015-12-09 2015-12-09 26247 ENSG00000224227 OTTHUMG00000040216 X64980 NR_002145 1370859 OR2L1P OR2L1P +HGNC:8266 OR2L2 olfactory receptor family 2 subfamily L member 2 protein-coding gene gene with protein product Approved 1q44 01q44 "HTPCRH07|HSHTPCRH07" "OR2L4P|OR2L12" olfactory receptor, family 2, subfamily L, member 2 Olfactory receptors, family 2 149 1999-11-19 2015-12-09 2015-12-09 26246 ENSG00000203663 OTTHUMG00000040214 uc001idw.4 X64978 NM_001004686 CCDS31103 Q8NH16 1370859 MGI:3030001 RGD:6495384 OR2L2 OR2L2 +HGNC:15009 OR2L3 olfactory receptor family 2 subfamily L member 3 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily L, member 3 Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 391192 ENSG00000198128 OTTHUMG00000040195 uc001idx.1 AB065950 NM_001004687 CCDS31104 Q8NG85 OR2L3 OR2L3 +HGNC:15011 OR2L5 olfactory receptor family 2 subfamily L member 5 protein-coding gene gene with protein product Approved 1q44 01q44 "OR2L11|OR2L5P" olfactory receptor, family 2, subfamily L, member 5 Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 81466 ENSG00000197454 OTTHUMG00000040194 uc031psy.1 NM_001258284 CCDS58068 Q8NG80 MGI:3030001 OR2L5 +HGNC:15012 OR2L6P olfactory receptor family 2 subfamily L member 6 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 2, subfamily L, member 6 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81465 ENSG00000232215 OTTHUMG00000040217 NG_004274 PGOHUM00000245305 OR2L6P +HGNC:15014 OR2L8 olfactory receptor family 2 subfamily L member 8 (gene/pseudogene) protein-coding gene gene with protein product Approved 1q44 01q44 "olfactory receptor, family 2, subfamily L, member 8|olfactory receptor, family 2, subfamily L, member 8 (gene/pseudogene)" Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2016-10-10 391190 ENSG00000279263 OTTHUMG00000040196 uc001idt.1 BK004459 NM_001001963 Q8NGY9 OR2L8 OR2L8 +HGNC:15015 OR2L9P olfactory receptor family 2 subfamily L member 9 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 2, subfamily L, member 9 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81462 ENSG00000237492 OTTHUMG00000040215 NG_004273 PGOHUM00000245303 OR2L9P +HGNC:19578 OR2L13 olfactory receptor family 2 subfamily L member 13 protein-coding gene gene with protein product Approved 1q44 01q44 OR2L14 olfactory receptor, family 2, subfamily L, member 13 Olfactory receptors, family 2 149 2002-11-04 2015-12-09 2015-12-09 284521 ENSG00000196071 OTTHUMG00000040446 uc001ids.4 BC028158 NM_175911 CCDS1637 Q8N349 "MGI:3030000|MGI:3030002" RGD:1333362 OR2L13 OR2L13 +HGNC:8267 OR2M1P olfactory receptor family 2 subfamily M member 1 pseudogene pseudogene pseudogene Approved 1q44 01q44 OST037 OR2M1 olfactory receptor, family 2, subfamily M, member 1 pseudogene Olfactory receptors, family 2 149 1999-12-09 2004-03-10 2015-12-09 2015-12-09 388762 ENSG00000177233 OTTHUMG00000040445 AF308814 NR_002141 12213199 OR2M1P OR2M1P +HGNC:8268 OR2M2 olfactory receptor family 2 subfamily M member 2 protein-coding gene gene with protein product Approved 1q44 01q44 "OST423|OR2M2Q" olfactory receptor, family 2, subfamily M, member 2 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 391194 ENSG00000198601 OTTHUMG00000040460 uc010pzf.2 AF399616 NM_001004688 CCDS31106 Q96R28 12213199 OR2M2 OR2M2 +HGNC:8269 OR2M3 olfactory receptor family 2 subfamily M member 3 protein-coding gene gene with protein product Approved 1q44 01q44 OST003 "OR2M6|OR2M3P" olfactory receptor, family 2, subfamily M, member 3 Olfactory receptors, family 2 149 1999-12-09 2004-03-10 2015-12-09 2015-12-09 127062 ENSG00000228198 OTTHUMG00000040459 uc010pzg.2 NM_001004689 CCDS31107 Q8NG83 MGI:3029998 RGD:1333258 OR2M3 OR2M3 +HGNC:8270 OR2M4 olfactory receptor family 2 subfamily M member 4 protein-coding gene gene with protein product Approved 1q44 01q44 "HTPCRX18|TPCR100|HSHTPCRX18|OST710" olfactory receptor, family 2, subfamily M, member 4 Olfactory receptors, family 2 149 1999-11-19 2015-12-09 2015-12-09 26245 ENSG00000171180 OTTHUMG00000040456 uc010pzh.2 X64992 NM_017504 CCDS31108 Q96R27 "1370859|9119360" OR2M4 OR2M4 +HGNC:19576 OR2M5 olfactory receptor family 2 subfamily M member 5 protein-coding gene gene with protein product Approved 1q44 01q44 OR2M5P olfactory receptor, family 2, subfamily M, member 5 Olfactory receptors, family 2 149 2002-11-04 2004-03-10 2015-12-09 2015-12-09 127059 ENSG00000162727 OTTHUMG00000040447 uc010pze.2 NM_001004690 CCDS31105 A3KFT3 MGI:3029999 OR2M5 OR2M5 +HGNC:19594 OR2M7 olfactory receptor family 2 subfamily M member 7 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily M, member 7 Olfactory receptors, family 2 149 2002-11-04 2015-12-09 2015-12-09 391196 ENSG00000177186 OTTHUMG00000040461 uc010pzk.2 BK004486 NM_001004691 CCDS31111 Q8NG81 RGD:1590296 OR2M7 OR2M7 +HGNC:8271 OR2N1P olfactory receptor family 2 subfamily N member 1 pseudogene pseudogene pseudogene Approved 6p22.2-p21.31 06p22.2-p21.31 OR6-7 olfactory receptor, family 2, subfamily N, member 1 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 26701 ENSG00000203492 OTTHUMG00000031224 AJ132194 NG_002216 OR2N1P +HGNC:8272 OR2P1P olfactory receptor family 2 subfamily P member 1 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 hs6M1-26 olfactory receptor, family 2, subfamily P, member 1 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 442183 ENSG00000236909 OTTHUMG00000031042 NG_004693 OR2P1P +HGNC:8273 OR2Q1P olfactory receptor family 2 subfamily Q member 1 pseudogene pseudogene pseudogene Approved 7q33-q35 07q33-q35 OR7-2 olfactory receptor, family 2, subfamily Q, member 1 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 346524 ENSG00000273377 OTTHUMG00000059327 AC004853 NG_004310 OR2Q1P +HGNC:8274 OR2R1P olfactory receptor family 2 subfamily R member 1 pseudogene pseudogene pseudogene Approved 7q35 07q35 OST058 OR2R1 "olfactory receptor, family 2, subfamily R, member 1 pseudogene|olfactory receptor, family 2, subfamily R, member 1, pseudogene" Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 392132 ENSG00000236853 OTTHUMG00000154318 NG_004373.2 OR2R1P +HGNC:8275 OR2S1P olfactory receptor family 2 subfamily S member 1 pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 OST611 olfactory receptor, family 2, subfamily S, member 1 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 392313 ENSG00000228307 OTTHUMG00000019894 NG_004379 PGOHUM00000236452 OR2S1P +HGNC:8276 OR2S2 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 9p13.3 09p13.3 olfactory receptor, family 2, subfamily S, member 2 (gene/pseudogene) Olfactory receptors, family 2 149 2000-06-19 2015-12-09 2016-10-10 56656 ENSG00000278889 OTTHUMG00000019891 uc064tae.1 AL135841 NM_019897 CCDS6596 Q9NQN1 MGI:1352681 RGD:1332606 OR2S2 OR2S2 +HGNC:8277 OR2T1 olfactory receptor family 2 subfamily T member 1 protein-coding gene gene with protein product Approved 1q44 01q44 OR1-25 olfactory receptor, family 2, subfamily T, member 1 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 26696 ENSG00000175143 OTTHUMG00000040450 uc010pzm.2 U86215 NM_030904 CCDS31115 O43869 9500546 MGI:109304 RGD:1334361 OR2T1 OR2T1 +HGNC:14725 OR2T2 olfactory receptor family 2 subfamily T member 2 protein-coding gene gene with protein product Approved 1q44 01q44 OR2T2P "olfactory receptor, family 2, subfamily T, member 2 pseudogene|olfactory receptor, family 2, subfamily T, member 2" Olfactory receptors, family 2 149 2001-02-28 2002-11-15 2015-12-09 2015-12-09 401992 ENSG00000196240 OTTHUMG00000040480 uc001iek.1 BK004462 NM_001004136 CCDS31116 Q6IF00 14983052 OR2T2 OR2T2 +HGNC:14727 OR2T3 olfactory receptor family 2 subfamily T member 3 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 3 Olfactory receptors, family 2 149 2001-02-28 2015-12-09 2015-12-09 343173 ENSG00000196539 OTTHUMG00000040452 uc001iel.1 NM_001005495 CCDS31117 Q8NH03 OR2T3 OR2T3 +HGNC:15016 OR2T4 olfactory receptor family 2 subfamily T member 4 protein-coding gene gene with protein product Approved 1q44 01q44 OR2T4Q olfactory receptor, family 2, subfamily T, member 4 Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 127074 ENSG00000196944 OTTHUMG00000040453 uc001ieh.1 BK004464 NM_001004696 CCDS31113 Q8NH00 "MGI:3030058|MGI:3030159|MGI:3030162|MGI:3030163|MGI:3030164|MGI:3030165" RGD:1333736 OR2T4 OR2T4 +HGNC:15017 OR2T5 olfactory receptor family 2 subfamily T member 5 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 5 Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 401993 ENSG00000203661 OTTHUMG00000040481 uc001iem.1 BK004465 NM_001004697 CCDS31118 Q6IEZ7 OR2T5 OR2T5 +HGNC:15018 OR2T6 olfactory receptor family 2 subfamily T member 6 protein-coding gene gene with protein product Approved 1q44 01q44 OST703 "OR2T6P|OR2T9" olfactory receptor, family 2, subfamily T, member 6 Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 254879 ENSG00000198104 OTTHUMG00000040448 uc001iei.1 AF399481 NM_001005471 CCDS31114 Q8NHC8 MGI:3030554 RGD:1334102 OR2T6 OR2T6 +HGNC:15019 OR2T7 olfactory receptor family 2 subfamily T member 7 other unknown Approved 1q44 01q44 OST723 OR2T7P olfactory receptor, family 2, subfamily T, member 7 Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 81458 ENSG00000227152 OTTHUMG00000040449 uc061ftm.1 NG_004272 P0C7T2 OR2T7 +HGNC:15020 OR2T8 olfactory receptor family 2 subfamily T member 8 protein-coding gene gene with protein product Approved 1q44 01q44 OR2T8P olfactory receptor, family 2, subfamily T, member 8 Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 343172 ENSG00000177462 OTTHUMG00000040205 uc010pzc.2 NM_001005522 CCDS31100 A6NH00 MGI:3030148 OR2T8 OR2T8 +HGNC:19573 OR2T10 olfactory receptor family 2 subfamily T member 10 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 10 Olfactory receptors, family 2 149 2002-11-04 2015-12-09 2015-12-09 127069 ENSG00000184022 OTTHUMG00000040388 uc010pzn.2 NM_001004693 CCDS31121 Q8NGZ9 OR2T10 OR2T10 +HGNC:19574 OR2T11 olfactory receptor family 2 subfamily T member 11 (gene/pseudogene) protein-coding gene gene with protein product Approved 1q44 01q44 OR2T11Q "olfactory receptor, family 2, subfamily T, member 11|olfactory receptor, family 2, subfamily T, member 11 (gene/pseudogene)" Olfactory receptors, family 2 149 2002-11-04 2015-12-09 2016-10-10 127077 ENSG00000279301 OTTHUMG00000040384 uc001ier.1 BK004476 NM_001001964 Q8NH01 OR2T11 OR2T11 +HGNC:19592 OR2T12 olfactory receptor family 2 subfamily T member 12 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 12 Olfactory receptors, family 2 149 2002-11-04 2015-12-09 2015-12-09 127064 ENSG00000177201 OTTHUMG00000040457 uc010pzj.2 BK004485 NM_001004692 CCDS31110 Q8NG77 OR2T12 OR2T12 +HGNC:31252 OR2T27 olfactory receptor family 2 subfamily T member 27 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 27 Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 403239 ENSG00000187701 OTTHUMG00000040376 uc010pzo.2 NM_001001824 CCDS31124 Q8NH04 OR2T27 OR2T27 +HGNC:31253 OR2T29 olfactory receptor family 2 subfamily T member 29 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 29 Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 343563 ENSG00000182783 OTTHUMG00000040382 uc001ieo.2 NM_001004694 CCDS55695 Q8NH02 RGD:9196653 OR2T29 OR2T29 +HGNC:31254 OR2T32P olfactory receptor family 2 subfamily T member 32 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 32 pseudogene Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 403241 ENSG00000197067 OTTHUMG00000040455 NG_004411 PGOHUM00000244545 OR2T32P +HGNC:31255 OR2T33 olfactory receptor family 2 subfamily T member 33 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 33 Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 391195 ENSG00000177212 OTTHUMG00000040458 uc010pzi.2 NM_001004695 CCDS31109 Q8NG76 RGD:1333990 OR2T33 OR2T33 +HGNC:31256 OR2T34 olfactory receptor family 2 subfamily T member 34 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 34 Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 127068 ENSG00000183310 OTTHUMG00000040387 uc001iep.1 BK004477 NM_001001821 CCDS31120 Q8NGX1 OR2T34 OR2T34 +HGNC:31257 OR2T35 olfactory receptor family 2 subfamily T member 35 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 2, subfamily T, member 35 Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 403244 ENSG00000177151 OTTHUMG00000040380 uc001ies.1 BK004475 NM_001001827 CCDS31123 Q8NGX2 MGI:3030555 RGD:1333947 OR2T35 OR2T35 +HGNC:8278 OR2U1P olfactory receptor family 2 subfamily U member 1 pseudogene pseudogene pseudogene Approved 6p22.2-p21.32 06p22.2-p21.32 hs6M1-24 OR2AU1P olfactory receptor, family 2, subfamily U, member 1 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 26695 ENSG00000204697 OTTHUMG00000031040 NM_001080842 OR2U1P +HGNC:8279 OR2U2P olfactory receptor family 2 subfamily U member 2 pseudogene pseudogene pseudogene Approved 6p22.2-p21.32 06p22.2-p21.32 hs6M1-23 olfactory receptor, family 2, subfamily U, member 2 pseudogene Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 26694 ENSG00000242524 OTTHUMG00000031055 NG_004687 OR2U2P +HGNC:8280 OR2V1 olfactory receptor family 2 subfamily V member 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 OST265 OR2V1P olfactory receptor, family 2, subfamily V, member 1 Olfactory receptors, family 2 149 1999-12-09 2004-03-10 2015-12-09 2015-12-09 26693 ENSG00000185372 OTTHUMG00000162118 uc031smg.1 AB065465 NM_001258283 CCDS58992 Q8NHB1 MGI:1333785 RGD:1334353 OR2V1 OR2V1 +HGNC:15341 OR2V2 olfactory receptor family 2 subfamily V member 2 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 OST713 OR2V3 olfactory receptor, family 2, subfamily V, member 2 Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 285659 ENSG00000182613 OTTHUMG00000130933 uc011dhj.2 AL161615 NM_206880 CCDS4461 Q96R30 MGI:3031230 RGD:1333300 OR2V2 OR2V2 +HGNC:8281 OR2W1 olfactory receptor family 2 subfamily W member 1 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 hs6M1-15 olfactory receptor, family 2, subfamily W, member 1 Olfactory receptors, family 2 149 1999-12-09 2015-12-09 2015-12-09 26692 ENSG00000204704 OTTHUMG00000031048 uc003nlw.3 AL035402 NM_030903 CCDS4656 Q9Y3N9 "MGI:3030097|MGI:3031203" RGD:6484939 OR2W1 OR2W1 +HGNC:13970 OR2W2P olfactory receptor family 2 subfamily W member 2 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 hs6M1-30P olfactory receptor, family 2, subfamily W, member 2 pseudogene Olfactory receptors, family 2 149 2001-04-03 2015-12-09 2015-12-09 81694 ENSG00000217315 OTTHUMG00000014500 NG_004279 PGOHUM00000243537 OR2W2P +HGNC:15021 OR2W3 olfactory receptor family 2 subfamily W member 3 protein-coding gene gene with protein product Approved 1q44 01q44 OST718 "OR2W8P|OR2W3P" olfactory receptor, family 2, subfamily W, member 3 Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 343171 ENSG00000238243 OTTHUMG00000040204 uc010pzb.2 N75737 NM_001001957 CCDS31099 Q7Z3T1 14983052 "MGI:3030151|MGI:3030156" RGD:1332706 OR2W3 616729 OR2W3 +HGNC:15071 OR2W4P olfactory receptor family 2 subfamily W member 4 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 olfactory receptor, family 2, subfamily W, member 4 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81407 ENSG00000216629 OTTHUMG00000014499 NG_004261 PGOHUM00000243535 OR2W4P +HGNC:15424 OR2W5 olfactory receptor family 2 subfamily W member 5 (gene/pseudogene) protein-coding gene gene with protein product Approved 1q44 01q44 OST722 OR2W5P "olfactory receptor, family 2, subfamily W, member 5|olfactory receptor, family 2, subfamily W, member 5 (gene/pseudogene)" Olfactory receptors, family 2 149 2001-03-28 2004-03-10 2015-12-09 2015-12-09 441932 ENSG00000203664 OTTHUMG00000040573 NM_001004698 A6NFC9 12213199 OR2W5 PGOHUM00000245297 OR2W5 +HGNC:15072 OR2W6P olfactory receptor family 2 subfamily W member 6 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 OR2W7P olfactory receptor, family 2, subfamily W, member 6 pseudogene Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 81406 ENSG00000168126 OTTHUMG00000014496 AL133267 NG_004260 Q8NHA6 RGD:1333996 PGOHUM00000243533 OR2W6P +HGNC:31258 OR2X1P olfactory receptor family 2 subfamily X member 1 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 2, subfamily X, member 1 pseudogene Olfactory receptors, family 2 149 2004-02-26 2015-12-09 2015-12-09 403245 ENSG00000224830 OTTHUMG00000040210 NG_004412 PGOHUM00000245302 OR2X1P +HGNC:14837 OR2Y1 olfactory receptor family 2 subfamily Y member 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 olfactory receptor, family 2, subfamily Y, member 1 Olfactory receptors, family 2 149 2001-02-28 2015-12-09 2016-10-05 134083 ENSG00000174339 OTTHUMG00000162237 uc003mmf.2 AB065676 XM_068682 CCDS34323 Q8NGV0 "MGI:107598|MGI:3031219|MGI:3031220|MGI:3031223|MGI:3031225|MGI:3031226|MGI:3031227" RGD:1333571 OR2Y1 OR2Y1 +HGNC:15391 OR2Z1 olfactory receptor family 2 subfamily Z member 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 OR2Z2 "olfactory receptor, family 2, subfamily Z, member 2|olfactory receptor, family 2, subfamily Z, member 1" Olfactory receptors, family 2 149 2001-03-28 2015-12-09 2015-12-09 284383 ENSG00000181733 OTTHUMG00000182195 uc010xkg.3 AC008753 NM_001004699 CCDS32895 Q8NG97 "MGI:3030206|MGI:3030207" RGD:1334055 OR2Z1 OR2Z1 +HGNC:8282 OR3A1 olfactory receptor family 3 subfamily A member 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "OLFRA03|OR40|OR17-40" olfactory receptor, family 3, subfamily A, member 1 Olfactory receptors, family 3 150 1998-01-29 2015-12-09 2015-12-09 4994 ENSG00000180090 OTTHUMG00000090642 uc002fvh.1 X80391 XM_017024695 CCDS11023 P47881 "8921386|8647456" "MGI:3030235|MGI:3030236|MGI:3030244|MGI:3030245" RGD:1333146 OR3A1 OR3A1 +HGNC:8283 OR3A2 olfactory receptor family 3 subfamily A member 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "OLFRA04|OR228|OR17-228" olfactory receptor, family 3, subfamily A, member 2 Olfactory receptors, family 3 150 1998-01-29 2015-12-09 2015-12-09 4995 ENSG00000221882 OTTHUMG00000177667 uc002fvg.4 U04713 XM_017024697 CCDS42233 P47893 "8921386|10673334" "MGI:3030235|MGI:3030236|MGI:3030244|MGI:3030245" OR3A2 OR3A2 +HGNC:8284 OR3A3 olfactory receptor family 3 subfamily A member 3 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "OR17-201|OR17-137|OR17-16" "OR3A6|OR3A7|OR3A8P" olfactory receptor, family 3, subfamily A, member 3 Olfactory receptors, family 3 150 1998-09-14 2015-12-09 2016-10-05 8392 ENSG00000159961 OTTHUMG00000090649 uc010vrd.2 U04688 XM_011524028 CCDS11025 P47888 "8004088|9500546" "MGI:3030235|MGI:3030236|MGI:3030244|MGI:3030245" OR3A3 OR3A3 +HGNC:15510 OR3A4P olfactory receptor family 3 subfamily A member 4 pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 OR3A4 "olfactory receptor, family 3, subfamily A, member 4|olfactory receptor, family 3, subfamily A, member 4 pseudogene" Olfactory receptors, family 3 150 2001-04-06 2011-09-15 2015-12-09 2015-12-09 390756 ENSG00000180068 OTTHUMG00000132940 BK004695 NM_001005334 P47883 RGD:1334195 PGOHUM00000237197 OR3A4 +HGNC:8286 OR3A5P olfactory receptor family 3 subfamily A member 5 pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 "OLFRA06|OR25|OR17-25|RP11-64J4.6-001" olfactory receptor, family 3, subfamily A, member 5 pseudogene 1998-01-29 2015-12-09 2015-12-09 100856809 ENSG00000272546 OTTHUMG00000185967 AF087921 NG_031881 8921386 PGOHUM00000237198 +HGNC:14839 OR3B1P olfactory receptor family 3 subfamily B member 1 pseudogene pseudogene pseudogene Approved Xq28 Xq28 olfactory receptor, family 3, subfamily B, member 1 pseudogene Olfactory receptors, family 3 150 2001-02-28 2015-12-09 2015-12-09 392561 ENSG00000237619 OTTHUMG00000024240 AF277315 NG_004382 PGOHUM00000241616 OR3B1P +HGNC:25339 OR3D1P olfactory receptor family 3 subfamily D member 1 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 3, subfamily D, member 1 pseudogene Olfactory receptors, family 3 150 2005-03-07 2015-12-09 2015-12-09 504175 ENSG00000230411 OTTHUMG00000040200 NG_004862 PGOHUM00000245299 OR3D1P +HGNC:8289 OR4A1P olfactory receptor family 4 subfamily A member 1 pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 OR11-30 OR4A20P olfactory receptor, family 4, subfamily A, member 1 pseudogene Olfactory receptors, family 4 151 1998-11-09 2015-12-09 2015-12-09 8596 ENSG00000254408 OTTHUMG00000166682 AF065869 NG_002173 9787077 PGOHUM00000242245 OR4A1P +HGNC:15159 OR4A2P olfactory receptor family 4 subfamily A member 2 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 2 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-05 390133 ENSG00000227547 OTTHUMG00000166766 NG_004330 PGOHUM00000242254 OR4A2P +HGNC:15160 OR4A3P olfactory receptor family 4 subfamily A member 3 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 3 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-05 81320 ENSG00000254464 OTTHUMG00000166767 NG_004237 PGOHUM00000257820 OR4A3P +HGNC:15161 OR4A4P olfactory receptor family 4 subfamily A member 4 pseudogene pseudogene pseudogene Approved 11q11 11q11 OR4A4 olfactory receptor, family 4, subfamily A, member 4 pseudogene Olfactory receptors, family 4 151 2001-03-28 2004-03-10 2015-12-09 2016-10-05 390134 ENSG00000254769 OTTHUMG00000166768 NG_004331 Q8NGN8 PGOHUM00000250366 OR4A4P +HGNC:15162 OR4A5 olfactory receptor family 4 subfamily A member 5 protein-coding gene gene with protein product Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 5 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-05 81318 ENSG00000221840 OTTHUMG00000166764 uc001nhi.3 AB065506 NM_001005272 CCDS73289 Q8NH83 MGI:3031072 RGD:1332997 OR4A5 OR4A5 +HGNC:15163 OR4A6P olfactory receptor family 4 subfamily A member 6 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 6 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-05 390131 ENSG00000255078 OTTHUMG00000166763 NG_004329 PGOHUM00000242251 OR4A6P +HGNC:15164 OR4A7P olfactory receptor family 4 subfamily A member 7 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 7 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-05 81316 ENSG00000255349 OTTHUMG00000166765 NG_004236 PGOHUM00000242252 OR4A7P +HGNC:15165 OR4A8 olfactory receptor family 4 subfamily A member 8 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q11 11q11 OR4A8P "olfactory receptor, family 4, subfamily A, member 8 pseudogene|olfactory receptor, family 4, subfamily A, member 8 (gene/pseudogene)" Olfactory receptors, family 4 151 2001-03-28 2014-10-02 2015-12-09 2016-10-05 81315 ENSG00000225997 OTTHUMG00000154245 NG_004235 P0C604 RGD:1588976 PGOHUM00000242253 OR4A8P +HGNC:15166 OR4A9P olfactory receptor family 4 subfamily A member 9 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 9 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390137 ENSG00000254891 OTTHUMG00000166712 NG_004333 PGOHUM00000242708 OR4A9P +HGNC:15147 OR4A10P olfactory receptor family 4 subfamily A member 10 pseudogene pseudogene pseudogene Approved 11q11 11q11 OR4A25P olfactory receptor, family 4, subfamily A, member 10 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390138 ENSG00000254886 OTTHUMG00000166778 NG_004334 PGOHUM00000257878 OR4A10P +HGNC:15148 OR4A11P olfactory receptor family 4 subfamily A member 11 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 11 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390136 ENSG00000254663 OTTHUMG00000166708 AC011829 NG_004332 PGOHUM00000242706 OR4A11P +HGNC:15149 OR4A12P olfactory receptor family 4 subfamily A member 12 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 12 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81331 ENSG00000254723 OTTHUMG00000166709 NG_004243 PGOHUM00000242707 OR4A12P +HGNC:15150 OR4A13P olfactory receptor family 4 subfamily A member 13 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 13 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81330 ENSG00000181950 OTTHUMG00000166780 NG_004242 OR4A13P PGOHUM00000257879 OR4A13P +HGNC:15151 OR4A14P olfactory receptor family 4 subfamily A member 14 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 14 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81329 ENSG00000254962 OTTHUMG00000166782 NG_004241 OR4A14P +HGNC:15152 OR4A15 olfactory receptor family 4 subfamily A member 15 protein-coding gene gene with protein product Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 15 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81328 ENSG00000181958 OTTHUMG00000166711 uc010rif.2 AB065776 NM_001005275 CCDS31500 Q8NGL6 MGI:3031068 RGD:1333480 OR4A15 OR4A15 +HGNC:15153 OR4A16 olfactory receptor family 4 subfamily A member 16 protein-coding gene gene with protein product Approved 11q11 11q11 OR4A16Q olfactory receptor, family 4, subfamily A, member 16 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81327 ENSG00000181961 OTTHUMG00000166710 uc010rie.2 AB065519 NM_001005274 CCDS31499 Q8NH70 MGI:3031074 RGD:1333089 OR4A16 OR4A16 +HGNC:15154 OR4A17P olfactory receptor family 4 subfamily A member 17 pseudogene pseudogene pseudogene Approved 11q11 11q11 OR4A22P olfactory receptor, family 4, subfamily A, member 17 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390139 ENSG00000255196 OTTHUMG00000166779 NG_004335 PGOHUM00000242711 OR4A17P +HGNC:15155 OR4A18P olfactory receptor family 4 subfamily A member 18 pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily A, member 18 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81325 ENSG00000254637 OTTHUMG00000166756 NG_004240 PGOHUM00000250363 OR4A18P +HGNC:15156 OR4A19P olfactory receptor family 4 subfamily A member 19 pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily A, member 19 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81324 ENSG00000254940 OTTHUMG00000166757 NG_004239 PGOHUM00000250364 OR4A19P +HGNC:15158 OR4A21P olfactory receptor family 4 subfamily A member 21 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 21 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81322 ENSG00000181943 OTTHUMG00000167393 NG_004238 PGOHUM00000257881 OR4A21P +HGNC:31259 OR4A40P olfactory receptor family 4 subfamily A member 40 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 40 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 390116 ENSG00000254832 OTTHUMG00000166584 NG_004327 PGOHUM00000242669 OR4A40P +HGNC:31260 OR4A41P olfactory receptor family 4 subfamily A member 41 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 41 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403247 ENSG00000255297 OTTHUMG00000166605 NG_004413 PGOHUM00000242672 OR4A41P +HGNC:31261 OR4A42P olfactory receptor family 4 subfamily A member 42 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 42 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403248 ENSG00000254674 OTTHUMG00000166606 NG_004414 PGOHUM00000242673 OR4A42P +HGNC:31262 OR4A43P olfactory receptor family 4 subfamily A member 43 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 43 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 390117 ENSG00000255534 OTTHUMG00000166585 NG_004328 PGOHUM00000242670 OR4A43P +HGNC:31263 OR4A44P olfactory receptor family 4 subfamily A member 44 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 44 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403250 ENSG00000255053 OTTHUMG00000166607 NG_004415 PGOHUM00000242674 OR4A44P +HGNC:31264 OR4A45P olfactory receptor family 4 subfamily A member 45 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 45 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403251 ENSG00000213607 OTTHUMG00000166604 NG_004416 PGOHUM00000242671 OR4A45P +HGNC:31265 OR4A46P olfactory receptor family 4 subfamily A member 46 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 46 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403252 ENSG00000255304 OTTHUMG00000166583 NG_004417 PGOHUM00000242668 OR4A46P +HGNC:31266 OR4A47 olfactory receptor family 4 subfamily A member 47 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 47 Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403253 ENSG00000237388 OTTHUMG00000166581 uc010rhx.3 BK004380 NM_001005512 CCDS31490 Q6IF82 MGI:3031090 RGD:1333140 OR4A47 OR4A47 +HGNC:31267 OR4A48P olfactory receptor family 4 subfamily A member 48 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily A, member 48 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403254 ENSG00000255113 OTTHUMG00000166582 NG_004418 PGOHUM00000242667 OR4A48P +HGNC:31268 OR4A49P olfactory receptor family 4 subfamily A member 49 pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily A, member 49 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403255 ENSG00000254472 OTTHUMG00000166755 NG_004419 PGOHUM00000242246 OR4A49P +HGNC:31269 OR4A50P olfactory receptor family 4 subfamily A member 50 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily A, member 50 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403256 ENSG00000255294 OTTHUMG00000166781 NG_004420 OR4A50P +HGNC:8290 OR4B1 olfactory receptor family 4 subfamily B member 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 OST208 olfactory receptor, family 4, subfamily B, member 1 Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 119765 ENSG00000175619 OTTHUMG00000166576 uc010rhs.3 AB065848 NM_001005470 CCDS31485 Q8NGF8 "MGI:109303|MGI:3031104|MGI:3031106" RGD:1334071 OR4B1 OR4B1 +HGNC:8291 OR4B2P olfactory receptor family 4 subfamily B member 2 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 hg449 olfactory receptor, family 4, subfamily B, member 2 pseudogene Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 26690 ENSG00000255514 OTTHUMG00000166577 NG_004136 PGOHUM00000242665 OR4B2P +HGNC:8292 OR4C1P olfactory receptor family 4 subfamily C member 1 pseudogene pseudogene pseudogene Approved 11q11 11q11 "HTPCRX11|HSHTPCRX11" OR4C1 olfactory receptor, family 4, subfamily C, member 1 pseudogene Olfactory receptors, family 4 151 1999-11-19 2015-12-09 2015-12-09 26242 ENSG00000254576 OTTHUMG00000166713 X64985 NG_002184 1370859 PGOHUM00000257882 OR4C1P +HGNC:14696 OR4C2P olfactory receptor family 4 subfamily C member 2 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 OR4C8P "olfactory receptor, family 4, subfamily C, member 8 pseudogene|olfactory receptor, family 4, subfamily C, member 2 pseudogene" Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 119750 ENSG00000182565 OTTHUMG00000166580 NG_002250 PGOHUM00000242666 OR4C2P +HGNC:14697 OR4C3 olfactory receptor family 4 subfamily C member 3 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily C, member 3 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 256144 ENSG00000176547 OTTHUMG00000166579 uc010rhv.3 AB065567 NM_001004702 CCDS31489 Q8NH37 MGI:3031098 RGD:1333798 OR4C3 OR4C3 +HGNC:14700 OR4C4P olfactory receptor family 4 subfamily C member 4 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OR4C47P "OR4C17P|OR4C17" "olfactory receptor, family 4, subfamily C, member 17 pseudogene|olfactory receptor, family 4, subfamily C, member 17|olfactory receptor, family 4, subfamily C, member 4 pseudogene" Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79550 ENSG00000197161 OTTHUMG00000169508 NG_002275 OR4C4P +HGNC:14702 OR4C5 olfactory receptor family 4 subfamily C member 5 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p11.2 11p11.2 OR4C5Q OR4C5P "olfactory receptor, family 4, subfamily C, member 5 pseudogene|olfactory receptor, family 4, subfamily C, member 5|olfactory receptor, family 4, subfamily C, member 5 (gene/pseudogene)" Olfactory receptors, family 4 151 2001-02-28 2004-03-05 2015-12-09 2015-12-09 79346 ENSG00000176540 OTTHUMG00000169462 uc058bja.1 NG_002247 Q8NGB2 RGD:1334210 OR4C5 +HGNC:14743 OR4C6 olfactory receptor family 4 subfamily C member 6 protein-coding gene gene with protein product Approved 11q11 11q11 olfactory receptor, family 4, subfamily C, member 6 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 219432 ENSG00000181903 OTTHUMG00000166800 uc010rik.2 CR593785 NM_001004704 CCDS31506 Q8NH72 MGI:3031064 RGD:1333562 OR4C6 OR4C6 +HGNC:14768 OR4C7P olfactory receptor family 4 subfamily C member 7 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily C, member 7 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2016-10-05 79294 ENSG00000255312 OTTHUMG00000166704 NG_002229 PGOHUM00000242703 OR4C7P +HGNC:14796 OR4C9P olfactory receptor family 4 subfamily C member 9 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily C, member 9 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79530 ENSG00000254925 OTTHUMG00000166635 NG_002267 PGOHUM00000242226 OR4C9P +HGNC:14800 OR4C10P olfactory receptor family 4 subfamily C member 10 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily C, member 10 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79526 ENSG00000184789 OTTHUMG00000154239 NG_002264 PGOHUM00000242225 OR4C10P +HGNC:15167 OR4C11 olfactory receptor family 4 subfamily C member 11 protein-coding gene gene with protein product Approved 11q11 11q11 OR4C11P olfactory receptor, family 4, subfamily C, member 11 Olfactory receptors, family 4 151 2001-03-28 2004-03-10 2015-12-09 2015-12-09 219429 ENSG00000172188 OTTHUMG00000165290 uc010rii.2 AB065774 NM_001004700 CCDS31503 Q6IEV9 "MGI:3031035|MGI:3031039|MGI:3031040" RGD:1332834 OR4C11 OR4C11 +HGNC:15168 OR4C12 olfactory receptor family 4 subfamily C member 12 protein-coding gene gene with protein product Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily C, member 12 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 283093 ENSG00000221954 OTTHUMG00000166687 uc010ria.2 BK004413 NM_001005270 CCDS31496 Q96R67 "MGI:3031089|MGI:3031093" RGD:1333962 OR4C12 OR4C12 +HGNC:15169 OR4C13 olfactory receptor family 4 subfamily C member 13 protein-coding gene gene with protein product Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily C, member 13 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 283092 ENSG00000258817 OTTHUMG00000166686 uc010rhz.2 AB065750 NM_001001955 CCDS31495 Q8NGP0 MGI:3031091 OR4C13 OR4C13 +HGNC:15170 OR4C14P olfactory receptor family 4 subfamily C member 14 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily C, member 14 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81310 ENSG00000233301 OTTHUMG00000154243 NG_004234 PGOHUM00000242715 OR4C14P +HGNC:15171 OR4C15 olfactory receptor family 4 subfamily C member 15 protein-coding gene gene with protein product Approved 11q11 11q11 olfactory receptor, family 4, subfamily C, member 15 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81309 ENSG00000181939 OTTHUMG00000166714 uc010rig.2 BK004319 NM_001001920 CCDS31501 Q8NGM1 "MGI:3031045|MGI:3031063" RGD:1333985 OR4C15 OR4C15 +HGNC:15172 OR4C16 olfactory receptor family 4 subfamily C member 16 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q11 11q11 "olfactory receptor, family 4, subfamily C, member 16|olfactory receptor, family 4, subfamily C, member 16 (gene/pseudogene)" Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-10 219428 ENSG00000279514 OTTHUMG00000165198 uc010rih.2 AB065773 NM_001004701 Q8NGL9 MGI:3031043 RGD:1333354 OR4C16 OR4C16 +HGNC:31270 OR4C45 olfactory receptor family 4 subfamily C member 45 protein-coding gene gene with protein product Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily C, member 45 Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2016-01-15 403257 ENSG00000260811 OTTHUMG00000175623 NM_001005513 A6NMZ5 MGI:3031097 RGD:1333254 OR4C45 +HGNC:31271 OR4C46 olfactory receptor family 4 subfamily C member 46 protein-coding gene gene with protein product Approved 11q11 11q11 olfactory receptor, family 4, subfamily C, member 46 Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2016-10-05 119749 ENSG00000185926 OTTHUMG00000166705 uc010ric.2 NM_001004703 CCDS73288 A6NHA9 MGI:3031092 RGD:1333833 OR4C46 614273 OR4C46 +HGNC:31272 OR4C48P olfactory receptor family 4 subfamily C member 48 pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily C, member 48 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403259 ENSG00000283605 OTTHUMG00000191880 NG_004421 PGOHUM00000290925 OR4C48P +HGNC:31273 OR4C49P olfactory receptor family 4 subfamily C member 49 pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily C, member 49 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403260 ENSG00000260595 OTTHUMG00000175624 NG_004422 PGOHUM00000290478 OR4C49P +HGNC:31274 OR4C50P olfactory receptor family 4 subfamily C member 50 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily C, member 50 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2016-10-05 256190 ENSG00000237610 OTTHUMG00000154323 NG_004295 PGOHUM00000242256 OR4C50P +HGNC:8293 OR4D1 olfactory receptor family 4 subfamily D member 1 protein-coding gene gene with protein product Approved 17q22 17q22 TPCR16 OR4D3 olfactory receptor, family 4, subfamily D, member 1 Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 26689 ENSG00000141194 OTTHUMG00000178799 uc010wno.3 X89670 NM_012374 CCDS42365 Q15615 9119360 MGI:3030298 RGD:1333064 OR4D1 OR4D1 +HGNC:8294 OR4D2 olfactory receptor family 4 subfamily D member 2 protein-coding gene gene with protein product Approved 17q22 17q22 olfactory receptor, family 4, subfamily D, member 2 Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 124538 ENSG00000255713 OTTHUMG00000178801 uc010wnp.2 NM_001004707 CCDS32688 P58180 "MGI:3030296|MGI:3030297" RGD:1333783 OR4D2 OR4D2 +HGNC:14776 OR4D4P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:14852 OR4D5 olfactory receptor family 4 subfamily D member 5 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 olfactory receptor, family 4, subfamily D, member 5 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 219875 ENSG00000171014 OTTHUMG00000165961 uc001pzk.2 BK004316 NM_001001965 CCDS31699 Q8NGN0 MGI:3030818 RGD:1332863 OR4D5 OR4D5 +HGNC:15175 OR4D6 olfactory receptor family 4 subfamily D member 6 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 4, subfamily D, member 6 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 219983 ENSG00000166884 OTTHUMG00000167340 uc010rku.3 AB065803 NM_001004708 CCDS31562 Q8NGJ1 MGI:3031262 RGD:1333601 OR4D6 OR4D6 +HGNC:15176 OR4D7P olfactory receptor family 4 subfamily D member 7 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OST724 olfactory receptor, family 4, subfamily D, member 7 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81304 ENSG00000254770 OTTHUMG00000167344 NG_004233 PGOHUM00000242751 OR4D7P +HGNC:15177 OR4D8P olfactory receptor family 4 subfamily D member 8 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 4, subfamily D, member 8 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 401696 ENSG00000204989 OTTHUMG00000154282 NG_004232 PGOHUM00000242750 OR4D8P +HGNC:15178 OR4D9 olfactory receptor family 4 subfamily D member 9 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "olfactory receptor, family 4, subfamily D, member 9 pseudogene|olfactory receptor, family 4, subfamily D, member 9" Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390199 ENSG00000172742 OTTHUMG00000167343 uc010rkv.2 AB065861 NM_001004711 CCDS31564 Q8NGE8 "MGI:3031258|MGI:3031259|MGI:3031260" OR4D9 OR4D9 +HGNC:15173 OR4D10 olfactory receptor family 4 subfamily D member 10 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OST711 OR4D10P olfactory receptor, family 4, subfamily D, member 10 Olfactory receptors, family 4 151 2001-03-28 2004-03-10 2015-12-09 2015-12-09 390197 ENSG00000254466 OTTHUMG00000167341 uc001nnz.2 AB065808 NM_001004705 CCDS53636 Q8NGI6 "MGI:3031258|MGI:3031259|MGI:3031260" RGD:1333126 OR4D10 OR4D10 +HGNC:15174 OR4D11 olfactory receptor family 4 subfamily D member 11 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR4D11P olfactory receptor, family 4, subfamily D, member 11 Olfactory receptors, family 4 151 2001-03-28 2004-03-10 2015-12-09 2015-12-09 219986 ENSG00000176200 OTTHUMG00000167342 uc001noa.1 AB065810 NM_001004706 CCDS31563 Q8NGI4 MGI:3031257 RGD:1334346 OR4D11 OR4D11 +HGNC:19587 OR4D12P olfactory receptor family 4 subfamily D member 12 pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 OR7E103P olfactory receptor, family 4, subfamily D, member 12 pseudogene Olfactory receptors, family 4 151 2002-11-04 2015-12-09 2015-12-09 282754 ENSG00000198787 OTTHUMG00000185806 NG_004296 PGOHUM00000250696 OR7E103P +HGNC:8296 OR4E1 olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 OR4E1P "olfactory receptor, family 4, subfamily E, member 1 pseudogene|olfactory receptor, family 4, subfamily E, member 1 (gene/pseudogene)" Olfactory receptors, family 4 151 1999-12-09 2008-06-11 2015-12-09 2015-12-09 26687 ENSG00000276240 OTTHUMG00000188249 NM_001317107 P0C645 MGI:3031342 RGD:1333503 PGOHUM00000292295 OR4E1P +HGNC:8297 OR4E2 olfactory receptor family 4 subfamily E member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily E, member 2 Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 26686 ENSG00000221977 OTTHUMG00000168979 uc010tmd.2 NM_001001912 CCDS41916 Q8NGC2 MGI:3031343 RGD:1334073 OR4E2 OR4E2 +HGNC:8298 OR4F1P olfactory receptor family 4 subfamily F member 1 pseudogene pseudogene pseudogene Approved 6p25.3 06p25.3 HSDJ0609N19 OR4F1 olfactory receptor, family 4, subfamily F, member 1 pseudogene Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 26685 ENSG00000220212 OTTHUMG00000014107 NG_004134 PGOHUM00000243032 OR4F1P +HGNC:8299 OR4F2P olfactory receptor family 4 subfamily F member 2 pseudogene pseudogene pseudogene Approved 11p15.5 11p15.5 "OR4F2|hs6M1-11|S191N21" olfactory receptor, family 4, subfamily F, member 2 pseudogene Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 390028 ENSG00000224777 OTTHUMG00000154192 NG_004259 PGOHUM00000242104 OR4F2P +HGNC:8300 OR4F3 olfactory receptor family 4 subfamily F member 3 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 olfactory receptor, family 4, subfamily F, member 3 Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 26683 ENSG00000230178 OTTHUMG00000162081 uc011dhm.3 AC004908 XM_017009338 CCDS43415 Q6IEY1 MGI:3031137 RGD:1334011 OR4F3 OR4F3 +HGNC:8301 OR4F4 olfactory receptor family 4 subfamily F member 4 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 OR4F18 olfactory receptor, family 4, subfamily F, member 4 Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 26682 ENSG00000177693 OTTHUMG00000172272 uc002cdf.2 NM_001004195 CCDS32343 Q96R69 MGI:3031123 OR4F4 OR4F4 +HGNC:14825 OR4F5 olfactory receptor family 4 subfamily F member 5 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 olfactory receptor, family 4, subfamily F, member 5 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79501 ENSG00000186092 OTTHUMG00000001094 uc001aal.1 AB065592 NM_001005484 CCDS30547 Q8NH21 RGD:1566059 OR4F5 OR4F5 +HGNC:15372 OR4F6 olfactory receptor family 4 subfamily F member 6 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 OR4F12 "olfactory receptor, family 4, subfamily F, member 12|olfactory receptor, family 4, subfamily F, member 6" Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390648 ENSG00000184140 OTTHUMG00000172267 uc010utr.3 AC025234 NM_001005326 CCDS32341 Q8NGB9 MGI:3031144 RGD:1332734 OR4F6 OR4F6 +HGNC:15089 OR4F7P olfactory receptor family 4 subfamily F member 7 pseudogene pseudogene pseudogene Approved 6q27 06q27 OR4F10 olfactory receptor, family 4, subfamily F, member 7 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81390 ENSG00000217874 OTTHUMG00000016086 AC069287 NG_004682 PGOHUM00000243853 OR4F7P +HGNC:15395 OR4F8P olfactory receptor family 4 subfamily F member 8 pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 "OR4F20P|OR4F9P" olfactory receptor, family 4, subfamily F, member 8 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390872 ENSG00000266971 OTTHUMG00000180456 AC016626 NG_004359 PGOHUM00000234106 OR4F8P +HGNC:15076 OR4F13P olfactory receptor family 4 subfamily F member 13 pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 olfactory receptor, family 4, subfamily F, member 13 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390651 ENSG00000214344 OTTHUMG00000154399 "AB065564|AY792621" NR_046417 OR4F13P +HGNC:15077 OR4F14P olfactory receptor family 4 subfamily F member 14 pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 OR4F14 olfactory receptor, family 4, subfamily F, member 14 pseudogene Olfactory receptors, family 4 151 2001-03-28 2004-03-10 2015-12-09 2015-12-09 390650 ENSG00000232459 OTTHUMG00000154261 AB065901 NG_004356 OR4F14P +HGNC:15078 OR4F15 olfactory receptor family 4 subfamily F member 15 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 olfactory receptor, family 4, subfamily F, member 15 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390649 ENSG00000182854 OTTHUMG00000172268 uc010uts.3 BK004405 NM_001001674 CCDS32342 Q8NGB8 MGI:3031143 RGD:1333867 OR4F15 OR4F15 +HGNC:15079 OR4F16 olfactory receptor family 4 subfamily F member 16 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 olfactory receptor, family 4, subfamily F, member 16 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81399 ENSG00000273547 OTTHUMG00000002581 uc010nxv.2 NM_001005277 CCDS41221 Q6IEY1 MGI:3031137 OR4F16 OR4F16 +HGNC:15381 OR4F17 olfactory receptor family 4 subfamily F member 17 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "OR4F19|OR4F11P|OR4F18" olfactory receptor, family 4, subfamily F, member 17 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81099 ENSG00000176695 OTTHUMG00000180454 uc002loc.2 AC005605 NM_001005240 CCDS32854 Q8NGA8 OR4F17 OR4F17 +HGNC:19583 OR4F21 olfactory receptor family 4 subfamily F member 21 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 OR4F21P olfactory receptor, family 4, subfamily F, member 21 Olfactory receptors, family 4 151 2002-11-04 2004-03-10 2015-12-09 2015-12-09 441308 ENSG00000176269 OTTHUMG00000163908 uc011kwf.3 NM_001005504 CCDS34792 O95013 MGI:3031137 RGD:1333335 OR4F21 OR4F21 +HGNC:31229 OR4F28P olfactory receptor family 4 subfamily F member 28 pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 olfactory receptor, family 4, subfamily F, member 28 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 390652 ENSG00000257109 OTTHUMG00000172269 NG_004358 PGOHUM00000247295 OR4F28P +HGNC:31275 OR4F29 olfactory receptor family 4 subfamily F member 29 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 olfactory receptor, family 4, subfamily F, member 29 Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 729759 ENSG00000278566 OTTHUMG00000002860 uc010nxu.2 NM_001005221 CCDS72675 Q6IEY1 14983052 MGI:3031137 OR4F29 OR4F29 +HGNC:8302 OR4G1P olfactory receptor family 4 subfamily G member 1 pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 OLB OR4G8P "olfactory receptor, family 4, subfamily G, member 8 pseudogene|olfactory receptor, family 4, subfamily G, member 1 pseudogene" Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 26681 ENSG00000267310 OTTHUMG00000180453 NG_004133 PGOHUM00000234460 OR4G1P +HGNC:8303 OR4G2P olfactory receptor family 4 subfamily G member 2 pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 OR4G7P olfactory receptor, family 4, subfamily G, member 2 pseudogene Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2016-10-05 26680 ENSG00000183909 OTTHUMG00000154249 AF282024 NG_003201 OR4G2P +HGNC:8304 OR4G3P olfactory receptor family 4 subfamily G member 3 pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 "OLC|OLC-7501" "OR4G3|OR4G5P" olfactory receptor, family 4, subfamily G, member 3 pseudogene Olfactory receptors, family 4 151 1999-12-09 2015-12-09 2015-12-09 26679 ENSG00000282137 OTTHUMG00000180452 NG_003222 PGOHUM00000295157 OR4G3P +HGNC:14822 OR4G4P olfactory receptor family 4 subfamily G member 4 pseudogene pseudogene pseudogene Approved 1p36.33 01p36.33 olfactory receptor, family 4, subfamily G, member 4 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79504 ENSG00000268020 OTTHUMG00000185779 NG_004148 OR4G4P +HGNC:15039 OR4G6P olfactory receptor family 4 subfamily G member 6 pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 olfactory receptor, family 4, subfamily G, member 6 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81438 AC005604 NG_004268 PGOHUM00000246951 OR4G6P +HGNC:31276 OR4G11P olfactory receptor family 4 subfamily G member 11 pseudogene pseudogene pseudogene Approved 1p36.33 01p36.33 olfactory receptor, family 4, subfamily G, member 11 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403263 ENSG00000240361 OTTHUMG00000001095 NG_004423 OR4G11P +HGNC:8312 OR4H6P olfactory receptor family 4 subfamily H member 6 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 "OR15-71|OR4H6|OR15-82|OR4H9|OR5-39|OR5-84|OR4-114|OR4-115|OR4-119|OR15-69|OR15-80|OR15-81|OR14-58" "OR4H9P|OR4H10P|OR4H5P|OR4H11P|OR4H5|OR4H7|OR4H7P|OR4H2P|OR4H3P|OR4H11|OR4H2|OR4H3|OR4H1P|OR4H4P|OR4H10|OR4H4|OR4H8P|OR4H8" "olfactory receptor, family 4, subfamily H, member 8 pseudogene|olfactory receptor, family 4, subfamily H, member 6 pseudogene" Olfactory receptors, family 4 151 1999-11-25 2015-12-09 2015-12-09 26322 ENSG00000261277 OTTHUMG00000172787 U86230 NG_002185 9500546 PGOHUM00000261870 OR4H6P +HGNC:19433 OR4H12P olfactory receptor family 4 subfamily H member 12 pseudogene pseudogene pseudogene Approved 14p13 14p13 C14orf14 OR4H12 olfactory receptor, family 4, subfamily H, member 12 pseudogene Olfactory receptors, family 4 151 2002-11-04 2004-03-10 2015-12-09 2015-12-09 161271 ENSG00000176312 OTTHUMG00000170613 NG_004089 OR4H12P +HGNC:14726 OR4K1 olfactory receptor family 4 subfamily K member 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily K, member 1 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79544 ENSG00000155249 OTTHUMG00000170633 uc001vwj.2 XM_011537153 CCDS32025 Q8NGD4 MGI:3030562 RGD:1333529 OR4K1 OR4K1 +HGNC:14728 OR4K2 olfactory receptor family 4 subfamily K member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily K, member 2 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 390431 ENSG00000165762 OTTHUMG00000170624 uc001vwh.2 NM_001005501 CCDS32023 Q8NGD2 MGI:3030564 RGD:1333964 OR4K2 OR4K2 +HGNC:14731 OR4K3 olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 OR4K3P "olfactory receptor, family 4, subfamily K, member 3 pseudogene|olfactory receptor, family 4, subfamily K, member 3 (gene/pseudogene)" Olfactory receptors, family 4 151 2001-02-28 2008-01-23 2015-12-09 2015-12-09 283617 ENSG00000176290 OTTHUMG00000154257 NG_003198 Q96R72 PGOHUM00000247725 OR4K3P +HGNC:14744 OR4K4P olfactory receptor family 4 subfamily K member 4 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily K, member 4 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79318 ENSG00000258541 OTTHUMG00000170625 NG_002242 PGOHUM00000248035 OR4K4P +HGNC:14745 OR4K5 olfactory receptor family 4 subfamily K member 5 protein-coding gene gene with protein product Approved 14q11.22 14q11.22 olfactory receptor, family 4, subfamily K, member 5 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79317 ENSG00000176281 OTTHUMG00000170627 uc010tkw.3 BK004355 NM_001005483 CCDS32024 Q8NGD3 14983052 MGI:3030563 RGD:1334248 OR4K5 OR4K5 +HGNC:14748 OR4K6P olfactory receptor family 4 subfamily K member 6 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily K, member 6 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79314 ENSG00000228304 OTTHUMG00000170623 NG_002240 PGOHUM00000248034 OR4K6P +HGNC:14756 OR4K7P olfactory receptor family 4 subfamily K member 7 pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 OR4K10P olfactory receptor, family 4, subfamily K, member 7 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79306 ENSG00000265340 OTTHUMG00000178702 AC013659 NG_002235 PGOHUM00000235022 OR4K7P +HGNC:14787 OR4K8P olfactory receptor family 4 subfamily K member 8 pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 OR4K9P olfactory receptor, family 4, subfamily K, member 8 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 390836 ENSG00000266693 OTTHUMG00000178703 AC015480 NG_002222 PGOHUM00000235023 OR4K8P +HGNC:15402 OR4K11P olfactory receptor family 4 subfamily K member 11 pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 OR21-1 olfactory receptor, family 4, subfamily K, member 11 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81079 ENSG00000179381 OTTHUMG00000074202 AF546490 NG_004161 12644552 PGOHUM00000239016 OR4K11P +HGNC:15403 OR4K12P olfactory receptor family 4 subfamily K member 12 pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 OR21-2 olfactory receptor, family 4, subfamily K, member 12 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-05 81078 ENSG00000218549 OTTHUMG00000074203 NG_004160 PGOHUM00000239017 OR4K12P +HGNC:15351 OR4K13 olfactory receptor family 4 subfamily K member 13 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily K, member 13 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390433 ENSG00000176253 OTTHUMG00000170781 uc010tkz.3 NM_001004714 CCDS32028 Q8NH42 OR4K13 OR4K13 +HGNC:15352 OR4K14 olfactory receptor family 4 subfamily K member 14 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily K, member 14 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 122740 ENSG00000169484 OTTHUMG00000170780 uc010tky.3 NM_001004712 CCDS32027 Q8NGD5 OR4K14 OR4K14 +HGNC:15353 OR4K15 olfactory receptor family 4 subfamily K member 15 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 OR4K15Q olfactory receptor, family 4, subfamily K, member 15 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81127 ENSG00000169488 OTTHUMG00000170635 uc010tkx.3 NM_001005486 CCDS32026 Q8NH41 "MGI:3030559|MGI:3030560|MGI:3030561" RGD:1334431 OR4K15 OR4K15 +HGNC:15354 OR4K16P olfactory receptor family 4 subfamily K member 16 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily K, member 16 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81126 ENSG00000258822 OTTHUMG00000170634 NG_004172 PGOHUM00000248036 OR4K16P +HGNC:15355 OR4K17 olfactory receptor family 4 subfamily K member 17 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily K, member 17 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390436 ENSG00000176230 OTTHUMG00000170783 uc001vwo.1 NM_001004715 CCDS32030 Q8NGC6 OR4K17 OR4K17 +HGNC:15356 OR4L1 olfactory receptor family 4 subfamily L member 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 OR4L2P olfactory receptor, family 4, subfamily L, member 1 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 122742 ENSG00000176246 OTTHUMG00000169492 uc001vwn.1 NM_001004717 CCDS32029 Q8NH43 MGI:3030557 RGD:1332610 OR4L1 OR4L1 +HGNC:14735 OR4M1 olfactory receptor family 4 subfamily M member 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily M, member 1 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 441670 ENSG00000176299 OTTHUMG00000170599 uc010tku.3 XM_017021338 CCDS32021 Q8NGD0 MGI:3030568 RGD:1333393 OR4M1 OR4M1 +HGNC:15373 OR4M2 olfactory receptor family 4 subfamily M member 2 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 olfactory receptor, family 4, subfamily M, member 2 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390538 ENSG00000274102 OTTHUMG00000171738 uc010tzu.3 AC060768 NM_001004719 CCDS32172 Q8NGB6 OR4M2 OR4M2 +HGNC:14740 OR4N1P olfactory receptor family 4 subfamily N member 1 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily N, member 1 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79322 ENSG00000258564 OTTHUMG00000154362 NG_002243 PGOHUM00000248033 OR4N1P +HGNC:14742 OR4N2 olfactory receptor family 4 subfamily N member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily N, member 2 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 390429 ENSG00000176294 OTTHUMG00000170614 uc010tkv.2 NM_001004723 CCDS32022 Q8NGD1 "MGI:3030566|MGI:3030567" OR4N2 OR4N2 +HGNC:15374 OR4N3P olfactory receptor family 4 subfamily N member 3 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 4, subfamily N, member 3 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390539 ENSG00000259435 OTTHUMG00000172278 AI809240 NR_028067 PGOHUM00000293120 OR4N3P +HGNC:15375 OR4N4 olfactory receptor family 4 subfamily N member 4 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 olfactory receptor, family 4, subfamily N, member 4 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 283694 ENSG00000183706 OTTHUMG00000171739 uc010tzv.3 AI018459 NM_001005241 CCDS32173 Q8N0Y3 "MGI:3030566|MGI:3030567" RGD:1333578 OR4N4 OR4N4 +HGNC:15358 OR4N5 olfactory receptor family 4 subfamily N member 5 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily N, member 5 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390437 ENSG00000184394 OTTHUMG00000170784 uc010tla.2 NM_001004724 CCDS32031 Q8IXE1 MGI:3030556 RGD:1334059 OR4N5 OR4N5 +HGNC:14754 OR4P1P olfactory receptor family 4 subfamily P member 1 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily P, member 1 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79308 ENSG00000188439 OTTHUMG00000166802 NG_002236 PGOHUM00000257883 OR4P1P +HGNC:15425 OR4P2P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15180 OR4P4 olfactory receptor family 4 subfamily P member 4 protein-coding gene gene with protein product Approved 11q11 11q11 OR4P3P olfactory receptor, family 4, subfamily P, member 4 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81300 ENSG00000181927 OTTHUMG00000165300 uc010rij.2 AB065775 NM_001004124 CCDS31504 Q8NGL7 OR4P4 OR4P4 +HGNC:15376 OR4Q1P olfactory receptor family 4 subfamily Q member 1 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 4, subfamily Q, member 1 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81104 ENSG00000258652 OTTHUMG00000171737 NG_004162 PGOHUM00000293118 OR4Q1P +HGNC:15359 OR4Q2 olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 OR4Q2P "olfactory receptor, family 4, subfamily Q, member 2 pseudogene|olfactory receptor, family 4, subfamily Q, member 2 (gene/pseudogene)" Olfactory receptors, family 4 151 2001-03-28 2008-06-11 2015-12-09 2015-12-09 390432 ENSG00000196383 OTTHUMG00000168643 uc058yqw.1 NG_004349 P0C623 OR4Q2P +HGNC:15426 OR4Q3 olfactory receptor family 4 subfamily Q member 3 protein-coding gene gene with protein product Approved 14p13 14p13 C14orf13 OR4Q4 olfactory receptor, family 4, subfamily Q, member 3 Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 441669 ENSG00000182652 OTTHUMG00000170612 uc010tkt.2 AF179768 NM_172194 CCDS32020 Q8NH05 MGI:3030569 RGD:1561412 OR4Q3 OR4Q3 +HGNC:14798 OR4R1P olfactory receptor family 4 subfamily R member 1 pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily R, member 1 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79528 ENSG00000255215 OTTHUMG00000166636 NG_002265 PGOHUM00000242227 OR4R1P +HGNC:15181 OR4R2P olfactory receptor family 4 subfamily R member 2 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily R, member 2 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-05 81299 ENSG00000255560 OTTHUMG00000166703 NG_004231 PGOHUM00000242702 OR4R2P +HGNC:15182 OR4R3P olfactory receptor family 4 subfamily R member 3 pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 olfactory receptor, family 4, subfamily R, member 3 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81298 ENSG00000254624 OTTHUMG00000166685 NG_004230 PGOHUM00000242697 OR4R3P +HGNC:14705 OR4S1 olfactory receptor family 4 subfamily S member 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily S, member 1 Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 256148 ENSG00000176555 OTTHUMG00000166578 uc010rhu.2 AB065908 NM_001004725 CCDS31488 Q8NGB4 RGD:1334088 OR4S1 OR4S1 +HGNC:15183 OR4S2 olfactory receptor family 4 subfamily S member 2 protein-coding gene gene with protein product Approved 11q11 11q11 OST725 OR4S2P "olfactory receptor, family 4, subfamily S, member 2 pseudogene|olfactory receptor, family 4, subfamily S, member 2" Olfactory receptors, family 4 151 2001-03-28 2002-11-15 2015-12-09 2015-12-09 219431 ENSG00000174982 OTTHUMG00000166799 uc001nhs.1 BK004390 NM_001004059 CCDS31505 Q8NH73 MGI:3031027 RGD:1333439 OR4S2 OR4S2 +HGNC:15360 OR4T1P olfactory receptor family 4 subfamily T member 1 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily T, member 1 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390435 ENSG00000258641 OTTHUMG00000170782 NG_004351 PGOHUM00000248038 OR4T1P +HGNC:15361 OR4U1P olfactory receptor family 4 subfamily U member 1 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 4, subfamily U, member 1 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 390434 ENSG00000258899 OTTHUMG00000170636 NG_004350 PGOHUM00000248037 OR4U1P +HGNC:14736 OR4V1P olfactory receptor family 4 subfamily V member 1 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily V, member 1 pseudogene Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 79534 ENSG00000254841 OTTHUMG00000166801 NG_002270 PGOHUM00000242716 OR4V1P +HGNC:15405 OR4W1P olfactory receptor family 4 subfamily W member 1 pseudogene pseudogene pseudogene Approved Xq25 Xq25 olfactory receptor, family 4, subfamily W, member 1 pseudogene Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2015-12-09 81077 Z69908 NG_004159 PGOHUM00000241532 OR4W1P +HGNC:14854 OR4X1 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "olfactory receptor, family 4, subfamily X, member 1|olfactory receptor, family 4, subfamily X, member 1 (gene/pseudogene)" Olfactory receptors, family 4 151 2001-02-28 2015-12-09 2015-12-09 390113 ENSG00000176567 OTTHUMG00000165301 uc010rht.2 AB065544 NM_001004726 CCDS31487 Q8NH49 RGD:1332801 OR4X1 OR4X1 +HGNC:15184 OR4X2 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p11.2 11p11.2 olfactory receptor, family 4, subfamily X, member 2 (gene/pseudogene) Olfactory receptors, family 4 151 2001-03-28 2015-12-09 2016-10-10 119764 ENSG00000172208 OTTHUMG00000165302 uc058biw.1 AB065847 NM_001004727 Q8NGF9 RGD:1333461 OR4X2 OR4X2 +HGNC:31277 OR4X7P olfactory receptor family 4 subfamily X member 7 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 4, subfamily X, member 7 pseudogene Olfactory receptors, family 4 151 2004-02-26 2015-12-09 2015-12-09 403264 ENSG00000255077 OTTHUMG00000166777 NG_005820 +HGNC:8319 OR5A1 olfactory receptor family 5 subfamily A member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OST181 OR5A1P olfactory receptor, family 5, subfamily A, member 1 Olfactory receptors, family 5 152 1999-12-09 2015-12-09 2015-12-09 219982 ENSG00000172320 OTTHUMG00000167339 uc001nnx.2 AB065804 NM_001004728 CCDS31561 Q8NGJ0 MGI:2153205 RGD:1333796 OR5A1 OR5A1 +HGNC:15249 OR5A2 olfactory receptor family 5 subfamily A member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily A, member 2 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 219981 ENSG00000172324 OTTHUMG00000167419 uc010rkt.3 AB065805 NM_001001954 CCDS31560 Q8NGI9 RGD:1333575 OR5A2 OR5A2 +HGNC:15047 OR5AC1 olfactory receptor family 5 subfamily AC member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 3q11.2 03q11.2 OR5AC1P "olfactory receptor, family 5, subfamily AC, member 1 pseudogene|olfactory receptor, family 5, subfamily AC, member 1 (gene/pseudogene)" Olfactory receptors, family 5 152 2001-03-28 2008-06-11 2015-12-09 2015-12-09 81431 ENSG00000213439 OTTHUMG00000154300 uc062luw.1 NG_004267 P0C628 RGD:1334340 OR5AC1P +HGNC:15431 OR5AC2 olfactory receptor family 5 subfamily AC member 2 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 HSA1 olfactory receptor, family 5, subfamily AC, member 2 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81050 ENSG00000196578 OTTHUMG00000160083 uc011bgs.2 AF179759 NM_054106 CCDS33796 Q9NZP5 MGI:3030032 RGD:1333853 OR5AC2 OR5AC2 +HGNC:31284 OR5AC4P olfactory receptor family 5 subfamily AC member 4 pseudogene pseudogene pseudogene Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily AC, member 4 pseudogene Olfactory receptors, family 5 152 2004-02-26 2015-12-09 2015-12-09 403271 ENSG00000251090 OTTHUMG00000160069 NG_004426 PGOHUM00000238105 OR5AC4P +HGNC:14714 OR5AH1P olfactory receptor family 5 subfamily AH member 1 pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 olfactory receptor, family 5, subfamily AH, member 1 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79336 ENSG00000268067 OTTHUMG00000182169 AC006115 NG_002357 PGOHUM00000234806 OR5AH1P +HGNC:15250 OR5AK1P olfactory receptor family 5 subfamily AK member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OR5AK5P olfactory receptor, family 5, subfamily AK, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81230 ENSG00000255083 OTTHUMG00000167020 NG_004213 PGOHUM00000242735 OR5AK1P +HGNC:15251 OR5AK2 olfactory receptor family 5 subfamily AK member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AK, member 2 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 390181 ENSG00000181273 OTTHUMG00000167019 uc010rjp.3 AB065496 NM_001005323 CCDS31538 Q8NH90 MGI:3030827 RGD:1333144 OR5AK2 OR5AK2 +HGNC:15252 OR5AK3P olfactory receptor family 5 subfamily AK member 3 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OR5AK3 olfactory receptor, family 5, subfamily AK, member 3 pseudogene Olfactory receptors, family 5 152 2001-03-28 2004-03-10 2015-12-09 2015-12-09 81228 ENSG00000181282 OTTHUMG00000167018 NG_004212 Q8NH89 PGOHUM00000257888 OR5AK3P +HGNC:15253 OR5AK4P olfactory receptor family 5 subfamily AK member 4 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AK, member 4 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 219525 ENSG00000283307 OTTHUMG00000154396 NR_036445 PGOHUM00000242737 OR5AK4P +HGNC:14844 OR5AL1 olfactory receptor family 5 subfamily AL member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR5AL1P "olfactory receptor, family 5, subfamily AL, member 1 pseudogene|olfactory receptor, family 5, subfamily AL, member 1 (gene/pseudogene)" Olfactory receptors, family 5 152 2001-02-28 2008-06-11 2015-12-09 2015-12-09 79482 ENSG00000181395 OTTHUMG00000154218 uc058bkd.1 NG_004144 P0C617 MGI:3030876 RGD:1334269 PGOHUM00000242728 OR5AL1P +HGNC:14850 OR5AL2P olfactory receptor family 5 subfamily AL member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AL, member 2 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79476 ENSG00000255466 OTTHUMG00000166872 NG_004143 PGOHUM00000242727 OR5AL2P +HGNC:15254 OR5AM1P olfactory receptor family 5 subfamily AM member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AM, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81226 ENSG00000255172 OTTHUMG00000186005 NG_004211 PGOHUM00000242280 OR5AM1P +HGNC:15255 OR5AN1 olfactory receptor family 5 subfamily AN member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AN, member 1 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 390195 ENSG00000176495 OTTHUMG00000167337 uc010rks.3 AB065806 NM_001004729 CCDS31559 Q8NGI8 "MGI:3030096|MGI:3031271" RGD:1334070 OR5AN1 615702 OR5AN1 +HGNC:15256 OR5AN2P olfactory receptor family 5 subfamily AN member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AN, member 2 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81224 ENSG00000235678 OTTHUMG00000167417 NG_004210 PGOHUM00000257829 OR5AN2P +HGNC:31285 OR5AO1P olfactory receptor family 5 subfamily AO member 1 pseudogene pseudogene pseudogene Approved 11q 11q olfactory receptor, family 5, subfamily AO, member 1 pseudogene Olfactory receptors, family 5 152 2004-02-26 2015-12-09 2015-12-09 403272 ENSG00000272676 OTTHUMG00000186007 NG_004427 OR5AO1P +HGNC:15257 OR5AP1P olfactory receptor family 5 subfamily AP member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AP, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81223 ENSG00000254795 OTTHUMG00000166864 NG_004209 PGOHUM00000242281 OR5AP1P +HGNC:15258 OR5AP2 olfactory receptor family 5 subfamily AP member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AP, member 2 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 338675 ENSG00000172464 OTTHUMG00000166865 uc001njb.1 AB065854 NM_001002925 CCDS31534 Q8NGF4 MGI:3030854 RGD:1333086 OR5AP2 OR5AP2 +HGNC:15259 OR5AQ1P olfactory receptor family 5 subfamily AQ member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AQ, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81221 ENSG00000184741 OTTHUMG00000166838 NG_004208 PGOHUM00000257886 OR5AQ1P +HGNC:15260 OR5AR1 olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "olfactory receptor, family 5, subfamily AR, member 1|olfactory receptor, family 5, subfamily AR, member 1 (gene/pseudogene)" Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-11 219493 ENSG00000172459 OTTHUMG00000154213 uc058bki.1 AB065740 NM_001004730 Q8NGP9 MGI:3030853 RGD:1333623 OR5AR1 OR5AR1 +HGNC:15261 OR5AS1 olfactory receptor family 5 subfamily AS member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AS, member 1 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 219447 ENSG00000181785 OTTHUMG00000166830 uc010riw.2 AB065543 NM_001001921 CCDS31516 Q8N127 MGI:3030945 RGD:1333932 OR5AS1 OR5AS1 +HGNC:15362 OR5AU1 olfactory receptor family 5 subfamily AU member 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 5, subfamily AU, member 1 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 390445 ENSG00000169327 OTTHUMG00000170753 uc010tlp.3 AL157687 NM_001004731 CCDS32042 Q8NGC0 MGI:3030055 RGD:1333383 OR5AU1 OR5AU1 +HGNC:15406 OR5AW1P olfactory receptor family 5 subfamily AW member 1 pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 olfactory receptor, family 5, subfamily AW, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81076 ENSG00000229082 OTTHUMG00000153220 NG_004158 PGOHUM00000241543 OR5AW1P +HGNC:15262 OR5AZ1P olfactory receptor family 5 subfamily AZ member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily AZ, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 283193 ENSG00000180714 OTTHUMG00000167564 AP000743 NG_004207 PGOHUM00000257828 OR5AZ1P +HGNC:8322 OR5B1P olfactory receptor family 5 subfamily B member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 "OR8-122|OR8-123|OR6-57|OR6-55|OR3-144|OR912-92" "OR5B9P|OR5B9|OR5B5P|OR5B14P|OR5B7P|OR5B7|OR5B8|OR5B8P|OR5B5|OR5B6|OR5B6P" olfactory receptor, family 5, subfamily B, member 1 pseudogene Olfactory receptors, family 5 152 1999-11-25 2015-12-09 2015-12-09 401692 ENSG00000233499 OTTHUMG00000154286 U86283 NG_002305 9500546 OR5B1P +HGNC:8323 OR5B2 olfactory receptor family 5 subfamily B member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OST073 olfactory receptor, family 5, subfamily B, member 2 Olfactory receptors, family 5 152 1999-12-09 2015-12-09 2015-12-09 390190 ENSG00000172365 OTTHUMG00000167517 uc010rkg.2 AB065852 NM_001005566 CCDS31550 Q96R09 RGD:1333625 OR5B2 OR5B2 +HGNC:8324 OR5B3 olfactory receptor family 5 subfamily B member 3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OST129 OR5B13 olfactory receptor, family 5, subfamily B, member 3 Olfactory receptors, family 5 152 1999-12-09 2015-12-09 2015-12-09 441608 ENSG00000172769 OTTHUMG00000167516 uc010rkf.3 AB065545 NM_001005469 CCDS31549 Q8NH48 MGI:3031303 OR5B3 OR5B3 +HGNC:8320 OR5B10P olfactory receptor family 5 subfamily B member 10 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 "OR13-67|OR13-34|OR13-64" "OR5B11P|OR5B4P|OR5B10|OR5B11|OR5B18P" olfactory receptor, family 5, subfamily B, member 10 pseudogene Olfactory receptors, family 5 152 1999-11-25 2015-12-09 2015-12-09 390186 ENSG00000255096 OTTHUMG00000167554 U86223 NG_002306 9500546 PGOHUM00000242300 OR5B10P +HGNC:15432 OR5B12 olfactory receptor family 5 subfamily B member 12 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OST743 "OR5B12P|OR5B16" olfactory receptor, family 5, subfamily B, member 12 Olfactory receptors, family 5 152 2001-03-28 2004-03-10 2015-12-09 2015-12-09 390191 ENSG00000172362 OTTHUMG00000167543 uc010rkh.2 AB065851 NM_001004733 CCDS31551 Q96R08 12213199 "MGI:3031279|MGI:3031282" RGD:1334063 OR5B12 OR5B12 +HGNC:15265 OR5B15P olfactory receptor family 5 subfamily B member 15 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily B, member 15 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81215 ENSG00000273408 OTTHUMG00000186074 NG_004206 PGOHUM00000242303 OR5B15P +HGNC:15267 OR5B17 olfactory receptor family 5 subfamily B member 17 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR5B20P olfactory receptor, family 5, subfamily B, member 17 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 219965 ENSG00000197786 OTTHUMG00000167465 uc010rke.3 AB065849 NM_001005489 CCDS31548 Q8NGF7 MGI:3031301 RGD:1590072 OR5B17 OR5B17 +HGNC:15269 OR5B19P olfactory receptor family 5 subfamily B member 19 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily B, member 19 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81211 ENSG00000255431 OTTHUMG00000167553 NG_004205 PGOHUM00000242299 OR5B19P +HGNC:19616 OR5B21 olfactory receptor family 5 subfamily B member 21 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily B, member 21 Olfactory receptors, family 5 152 2002-11-04 2015-12-09 2015-12-09 219968 ENSG00000198283 OTTHUMG00000167519 uc010rki.3 NM_001005218 CCDS31552 A6NL26 MGI:3031278 RGD:1334091 OR5B21 OR5B21 +HGNC:15270 OR5BA1P olfactory receptor family 5 subfamily BA member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BA, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81210 ENSG00000255303 OTTHUMG00000167385 NG_004204 PGOHUM00000242290 OR5BA1P +HGNC:15271 OR5BB1P olfactory receptor family 5 subfamily BB member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BB, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81209 ENSG00000198261 OTTHUMG00000167338 NG_004203 PGOHUM00000257832 OR5BB1P +HGNC:15272 OR5BC1P olfactory receptor family 5 subfamily BC member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BC, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81208 ENSG00000255218 OTTHUMG00000167552 NG_004202 PGOHUM00000242298 OR5BC1P +HGNC:14843 OR5BD1P olfactory receptor family 5 subfamily BD member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BD, member 1 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79483 ENSG00000254749 OTTHUMG00000167565 NG_002253 PGOHUM00000242292 OR5BD1P +HGNC:15273 OR5BE1P olfactory receptor family 5 subfamily BE member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BE, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81207 ENSG00000225538 OTTHUMG00000154221 NG_004201 PGOHUM00000242722 OR5BE1P +HGNC:15407 OR5BH1P olfactory receptor family 5 subfamily BH member 1 pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 OR5BH2P olfactory receptor, family 5, subfamily BH, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81075 ENSG00000242610 OTTHUMG00000022407 NG_004157 PGOHUM00000250059 OR5BH1P +HGNC:15434 OR5BJ1P olfactory receptor family 5 subfamily BJ member 1 pseudogene pseudogene pseudogene Approved 12q13.11 12q13.11 OST740 olfactory receptor, family 5, subfamily BJ, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81047 ENSG00000257792 OTTHUMG00000170018 NG_004156 OR5BJ1P +HGNC:14817 OR5BK1P olfactory receptor family 5 subfamily BK member 1 pseudogene pseudogene pseudogene Approved 12q13.11 12q13.11 olfactory receptor, family 5, subfamily BK, member 1 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 401718 ENSG00000257763 OTTHUMG00000170016 NG_004391 PGOHUM00000239442 OR5BK1P +HGNC:15275 OR5BL1P olfactory receptor family 5 subfamily BL member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BL, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81205 ENSG00000272569 OTTHUMG00000186072 NG_004200 OR5BL1P +HGNC:14835 OR5BM1P olfactory receptor family 5 subfamily BM member 1 pseudogene pseudogene pseudogene Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily BM, member 1 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79491 ENSG00000250750 OTTHUMG00000160086 AC026100 NG_004145 PGOHUM00000238103 OR5BM1P +HGNC:15276 OR5BN1P olfactory receptor family 5 subfamily BN member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BN, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81204 ENSG00000254848 OTTHUMG00000166841 NG_004199 OR5BN1P +HGNC:29194 OR5BN2P olfactory receptor family 5 subfamily BN member 2 pseudogene pseudogene pseudogene Approved 11q12 11q12 olfactory receptor, family 5, subfamily BN, member 2 pseudogene Olfactory receptors, family 5 152 2005-03-07 2015-12-09 2015-12-09 504181 ENSG00000255140 OTTHUMG00000166840 NG_004864 OR5BN2P +HGNC:15277 OR5BP1P olfactory receptor family 5 subfamily BP member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BP, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81203 ENSG00000273255 OTTHUMG00000186008 AP001074 NG_004198 PGOHUM00000242739 OR5BP1P +HGNC:15278 OR5BQ1P olfactory receptor family 5 subfamily BQ member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OR5BQ2P olfactory receptor, family 5, subfamily BQ, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81202 ENSG00000273228 OTTHUMG00000186006 NG_004197 PGOHUM00000242736 OR5BQ1P +HGNC:15279 OR5BR1P olfactory receptor family 5 subfamily BR member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily BR, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81201 ENSG00000255386 OTTHUMG00000167418 NG_004196 OR5BR1P +HGNC:19627 OR5BS1P olfactory receptor family 5 subfamily BS member 1 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 OR5BS1 olfactory receptor, family 5, subfamily BS, member 1 pseudogene Olfactory receptors, family 5 152 2002-11-04 2004-03-10 2015-12-09 2015-12-09 390313 ENSG00000198678 OTTHUMG00000170390 NG_004343 OR5BS1P +HGNC:19629 OR5BT1P olfactory receptor family 5 subfamily BT member 1 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 5, subfamily BT, member 1 pseudogene Olfactory receptors, family 5 152 2002-11-04 2015-12-09 2015-12-09 282790 ENSG00000258024 OTTHUMG00000170017 NG_004300 PGOHUM00000239443 OR5BT1P +HGNC:8331 OR5C1 olfactory receptor family 5 subfamily C member 1 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "OR9-F|hRPK-465_F_21" OR5C2P olfactory receptor, family 5, subfamily C, member 1 Olfactory receptors, family 5 152 1999-12-09 2015-12-09 2016-10-05 392391 ENSG00000148215 OTTHUMG00000020622 uc011lzd.2 AF399514 NM_001001923 CCDS35131 Q8NGR4 MGI:3030202 RGD:1333139 OR5C1 OR5C1 +HGNC:8335 OR5D2P olfactory receptor family 5 subfamily D member 2 pseudogene pseudogene pseudogene Approved 11q11 11q11 "OR11-7a|OR912-91|OR8-127|OR912-47|OR18-44|R5D9P|OR18-17|OR18-42|OR18-43|OR912-94|OR8-125" "OR5D6P|OR5D10P|OR5D1P|OR5D5P|OR5D12P|OR5D8P|OR5D7P|OR5D9P|OR5D12|OR5D11P|OR5D11" "olfactory receptor, family 5, subfamily D, member 11 pseudogene|olfactory receptor, family 5, subfamily D, member 2 pseudogene" Olfactory receptors, family 5 152 1998-11-09 2015-12-09 2015-12-09 8595 ENSG00000254457 OTTHUMG00000166804 AF065858 NG_002277 "9787077|9500546" PGOHUM00000242717 OR5D2P +HGNC:8336 OR5D3P olfactory receptor family 5 subfamily D member 3 pseudogene pseudogene pseudogene Approved 11q12 11q12 "OR11-8b|OR11-8c" "OR5D3|OR5D4" olfactory receptor, family 5, subfamily D, member 3 pseudogene Olfactory receptors, family 5 152 2001-02-08 2015-12-09 2015-12-09 8594 ENSG00000186886 OTTHUMG00000166805 AF065861 NG_002172 OR5D3P OR5D3P +HGNC:15280 OR5D13 olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q11 11q11 olfactory receptor, family 5, subfamily D, member 13 (gene/pseudogene) Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-10 390142 ENSG00000279761 OTTHUMG00000166807 uc010ril.2 BK004394 NM_001001967 Q8NGL4 RGD:1334192 OR5D13 OR5D13 +HGNC:15281 OR5D14 olfactory receptor family 5 subfamily D member 14 protein-coding gene gene with protein product Approved 11q11 11q11 olfactory receptor, family 5, subfamily D, member 14 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 219436 ENSG00000186113 OTTHUMG00000166809 uc010rim.2 AB065779 NM_001004735 CCDS31508 Q8NGL3 MGI:3030996 RGD:1332951 OR5D14 OR5D14 +HGNC:15282 OR5D15P olfactory receptor family 5 subfamily D member 15 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 5, subfamily D, member 15 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81198 ENSG00000255019 OTTHUMG00000166808 NG_004195 PGOHUM00000242718 OR5D15P +HGNC:15283 OR5D16 olfactory receptor family 5 subfamily D member 16 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily D, member 16 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 390144 ENSG00000205029 OTTHUMG00000154233 uc010rio.2 AB065783 NM_001005496 CCDS31512 Q8NGK9 MGI:3030989 RGD:1333473 OR5D16 OR5D16 +HGNC:15284 OR5D17P olfactory receptor family 5 subfamily D member 17 pseudogene pseudogene pseudogene Approved 11q11 11q11 olfactory receptor, family 5, subfamily D, member 17 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81196 ENSG00000181837 OTTHUMG00000166806 NG_004194 PGOHUM00000257885 OR5D17P +HGNC:15285 OR5D18 olfactory receptor family 5 subfamily D member 18 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily D, member 18 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 219438 ENSG00000186119 OTTHUMG00000166811 uc010rin.2 AB065781 NM_001001952 CCDS31510 Q8NGL1 MGI:2151908 OR5D18 OR5D18 +HGNC:8342 OR5E1P olfactory receptor family 5 subfamily E member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 "TPCR24|HSTPCR24" OR5E1 olfactory receptor, family 5, subfamily E, member 1 pseudogene Olfactory receptors, family 5 152 1999-11-26 2015-12-09 2015-12-09 26343 ENSG00000170688 OTTHUMG00000154333 X89671 NR_027711 9119360 OR5E1P PGOHUM00000242586 OR5E1P +HGNC:8343 OR5F1 olfactory receptor family 5 subfamily F member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR11-10 olfactory receptor, family 5, subfamily F, member 1 Olfactory receptors, family 5 152 1998-11-09 2015-12-09 2016-10-05 338674 ENSG00000149133 OTTHUMG00000166825 uc010riv.2 AF065863 NM_003697 CCDS31515 O95221 9787077 OR5F1 608492 OR5F1 +HGNC:15286 OR5F2P olfactory receptor family 5 subfamily F member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily F, member 2 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81194 ENSG00000182365 OTTHUMG00000166837 NG_004193 PGOHUM00000242266 OR5F2P +HGNC:8344 OR5G1P olfactory receptor family 5 subfamily G member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 "OR11-104|OR93" OR5G2P olfactory receptor, family 5, subfamily G, member 1 pseudogene Olfactory receptors, family 5 152 1998-11-09 2015-12-09 2015-12-09 8591 ENSG00000181296 OTTHUMG00000167016 AF065871 NG_002299 9787077 PGOHUM00000257824 OR5G1P +HGNC:15287 OR5G3 olfactory receptor family 5 subfamily G member 3 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "OR5G6P|OR5G3P" "olfactory receptor, family 5, subfamily G, member 3 pseudogene|olfactory receptor, family 5, subfamily G, member 3 (gene/pseudogene)" Olfactory receptors, family 5 152 2001-03-28 2008-06-11 2015-12-09 2015-12-09 81193 ENSG00000241356 OTTHUMG00000154395 uc058bkj.1 NG_002406 P0C626 PGOHUM00000257827 OR5G3P +HGNC:15288 OR5G4P olfactory receptor family 5 subfamily G member 4 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily G, member 4 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81192 ENSG00000255485 OTTHUMG00000167017 NG_004192 PGOHUM00000257825 OR5G4P +HGNC:15289 OR5G5P olfactory receptor family 5 subfamily G member 5 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily G, member 5 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81191 ENSG00000205025 OTTHUMG00000154297 NG_004191 PGOHUM00000257826 OR5G5P +HGNC:8346 OR5H1 olfactory receptor family 5 subfamily H member 1 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 "HTPCRX14|HSHTPCRX14" olfactory receptor, family 5, subfamily H, member 1 Olfactory receptors, family 5 152 1999-11-26 2015-12-09 2016-10-05 26341 ENSG00000231192 OTTHUMG00000160070 uc011bgt.2 X64988 NM_001005338 CCDS33797 A6NKK0 1370859 RGD:1332995 OR5H1 OR5H1 +HGNC:14752 OR5H2 olfactory receptor family 5 subfamily H member 2 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily H, member 2 Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79310 ENSG00000197938 OTTHUMG00000160080 uc003dsj.1 NM_001005482 CCDS33801 Q8NGV7 MGI:3030030 RGD:1333073 OR5H2 OR5H2 +HGNC:14753 OR5H3P olfactory receptor family 5 subfamily H member 3 pseudogene pseudogene pseudogene Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily H, member 3 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79309 ENSG00000249975 OTTHUMG00000160115 NG_002237 PGOHUM00000238108 OR5H3P +HGNC:14763 OR5H4P olfactory receptor family 5 subfamily H member 4 pseudogene pseudogene pseudogene Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily H, member 4 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79299 ENSG00000248507 OTTHUMG00000160116 NG_002231 PGOHUM00000238109 OR5H4P +HGNC:14765 OR5H5P olfactory receptor family 5 subfamily H member 5 pseudogene pseudogene pseudogene Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily H, member 5 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79297 ENSG00000249321 OTTHUMG00000160112 NG_002230 PGOHUM00000238107 OR5H5P +HGNC:14767 OR5H6 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding gene gene with protein product Approved 3q11.2 03q11.2 "olfactory receptor, family 5, subfamily H, member 6|olfactory receptor, family 5, subfamily H, member 6 (gene/pseudogene)" Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2016-10-05 79295 ENSG00000230301 OTTHUMG00000160078 uc003dsi.1 BK004374 XM_011513118 CCDS33800 Q8NGV6 MGI:3030021 OR5H6 OR5H6 +HGNC:14771 OR5H7P olfactory receptor family 5 subfamily H member 7 pseudogene pseudogene pseudogene Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily H, member 7 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79291 ENSG00000187900 OTTHUMG00000160117 NG_002228 PGOHUM00000250292 OR5H7P +HGNC:14773 OR5H8 olfactory receptor family 5 subfamily H member 8 (gene/pseudogene) protein-coding gene gene with protein product Approved 3q11.2 03q11.2 OR5H8P "olfactory receptor, family 5, subfamily H, member 8 pseudogene|olfactory receptor, family 5, subfamily H, member 8 (gene/pseudogene)" Olfactory receptors, family 5 152 2001-02-28 2014-10-02 2015-12-09 2015-12-09 79289 ENSG00000232535 OTTHUMG00000154298 NG_002227 P0DN80 OR5H8P +HGNC:31286 OR5H14 olfactory receptor family 5 subfamily H member 14 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily H, member 14 Olfactory receptors, family 5 152 2004-02-26 2015-12-09 2015-12-09 403273 ENSG00000236032 OTTHUMG00000160079 uc003dsg.2 NM_001005514 CCDS33798 A6NHG9 "MGI:3030025|MGI:3030027" OR5H14 OR5H14 +HGNC:31287 OR5H15 olfactory receptor family 5 subfamily H member 15 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily H, member 15 Olfactory receptors, family 5 152 2004-02-26 2015-12-09 2015-12-09 403274 ENSG00000233412 OTTHUMG00000160076 uc062luy.1 NM_001005515 CCDS33799 A6NDH6 MGI:3030017 OR5H15 OR5H15 +HGNC:8347 OR5I1 olfactory receptor family 5 subfamily I member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "HSOlf1|OLF1" olfactory receptor, family 5, subfamily I, member 1 Olfactory receptors, family 5 152 1999-07-30 2015-12-09 2016-10-05 10798 ENSG00000167825 OTTHUMG00000166821 uc010ris.2 BC069093 NM_006637 CCDS7949 Q13606 "9017400|9787077" MGI:1313139 RGD:1333671 OR5I1 608496 OR5I1 +HGNC:8348 OR5J1P olfactory receptor family 5 subfamily J member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 HTPCRH02 OR5J1 olfactory receptor, family 5, subfamily J, member 1 pseudogene Olfactory receptors, family 5 152 1999-11-26 2015-12-09 2015-12-09 401687 ENSG00000181780 OTTHUMG00000154228 X64974 NG_004086 1370859 PGOHUM00000242721 OR5J1P +HGNC:19612 OR5J2 olfactory receptor family 5 subfamily J member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily J, member 2 Olfactory receptors, family 5 152 2002-11-04 2015-12-09 2016-10-05 282775 ENSG00000174957 OTTHUMG00000166835 uc010rjb.2 AB065595 NM_001005492 CCDS31522 Q8NH18 MGI:3030886 RGD:1333285 OR5J2 OR5J2 +HGNC:31289 OR5J7P olfactory receptor family 5 subfamily J member 7 pseudogene pseudogene pseudogene Approved 11q 11q olfactory receptor, family 5, subfamily J, member 7 pseudogene Olfactory receptors, family 5 152 2004-02-26 2015-12-09 2015-12-09 403276 ENSG00000255217 OTTHUMG00000166843 NG_004428 OR5J7P +HGNC:8349 OR5K1 olfactory receptor family 5 subfamily K member 1 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 "HTPCRX10|HSHTPCRX10" olfactory receptor, family 5, subfamily K, member 1 Olfactory receptors, family 5 152 1999-11-26 2015-12-09 2015-12-09 26339 ENSG00000232382 OTTHUMG00000160048 uc003dsm.4 X64984 NM_001004736 CCDS43115 Q8NHB7 1370859 "MGI:3030006|MGI:3030007" OR5K1 OR5K1 +HGNC:14774 OR5K2 olfactory receptor family 5 subfamily K member 2 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily K, member 2 Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 402135 ENSG00000231861 OTTHUMG00000160049 uc011bgx.3 AC021660 NM_001004737 CCDS33804 Q8NHB8 MGI:3030011 RGD:6501340 OR5K2 OR5K2 +HGNC:31290 OR5K3 olfactory receptor family 5 subfamily K member 3 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily K, member 3 Olfactory receptors, family 5 152 2004-02-26 2015-12-09 2015-12-09 403277 ENSG00000206536 OTTHUMG00000160077 uc011bgw.2 NM_001005516 CCDS33803 A6NET4 MGI:3030029 RGD:1332965 OR5K3 OR5K3 +HGNC:31291 OR5K4 olfactory receptor family 5 subfamily K member 4 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 olfactory receptor, family 5, subfamily K, member 4 Olfactory receptors, family 5 152 2004-02-26 2015-12-09 2015-12-09 403278 ENSG00000196098 OTTHUMG00000160081 uc011bgv.2 NM_001005517 CCDS33802 A6NMS3 MGI:3030014 RGD:1333626 OR5K4 OR5K4 +HGNC:8350 OR5L1 olfactory receptor family 5 subfamily L member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OST262 olfactory receptor, family 5, subfamily L, member 1 (gene/pseudogene) Olfactory receptors, family 5 152 1999-12-09 2015-12-09 2016-10-11 219437 ENSG00000279395 OTTHUMG00000166810 uc001nhw.1 AB065780 NM_001004738 Q8NGL2 MGI:3030991 OR5L1 OR5L1 +HGNC:8351 OR5L2 olfactory receptor family 5 subfamily L member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "HTPCRX16|HSHTPCRX16" olfactory receptor, family 5, subfamily L, member 2 Olfactory receptors, family 5 152 1999-11-26 2015-12-09 2016-10-05 26338 ENSG00000205030 OTTHUMG00000166812 uc001nhy.1 AB065782 NM_001004739 CCDS31511 Q8NGL0 1370859 MGI:3030990 RGD:1333645 OR5L2 OR5L2 +HGNC:8352 OR5M1 olfactory receptor family 5 subfamily M member 1 protein-coding gene gene with protein product Approved 11q11 11q11 OST050 olfactory receptor, family 5, subfamily M, member 1 Olfactory receptors, family 5 152 1999-12-09 2015-12-09 2015-12-09 390168 ENSG00000255012 OTTHUMG00000166863 uc001nja.1 AB065742 NM_001004740 CCDS53631 Q8NGP8 "MGI:3030856|MGI:3030857" RGD:1332636 OR5M1 OR5M1 +HGNC:14803 OR5M2P olfactory receptor family 5 subfamily M member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 2 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79523 ENSG00000254752 OTTHUMG00000166876 NG_004154 PGOHUM00000242274 OR5M2P +HGNC:14806 OR5M3 olfactory receptor family 5 subfamily M member 3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 3 Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2016-10-05 219482 ENSG00000174937 OTTHUMG00000166875 uc010rjk.3 AB065746 NM_001004742 CCDS31532 Q8NGP4 "MGI:3030866|MGI:3030867" RGD:1332991 OR5M3 OR5M3 +HGNC:14808 OR5M4P olfactory receptor family 5 subfamily M member 4 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 4 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79518 ENSG00000230416 OTTHUMG00000166873 NG_004152 PGOHUM00000257887 OR5M4P +HGNC:14810 OR5M5P olfactory receptor family 5 subfamily M member 5 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 5 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 390166 ENSG00000185701 OTTHUMG00000166882 NG_004151 PGOHUM00000257823 OR5M5P +HGNC:14814 OR5M6P olfactory receptor family 5 subfamily M member 6 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 6 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79512 ENSG00000254603 OTTHUMG00000166881 NG_004150 PGOHUM00000250368 OR5M6P +HGNC:14818 OR5M7P olfactory receptor family 5 subfamily M member 7 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 7 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79508 ENSG00000254490 OTTHUMG00000166879 NG_004149 PGOHUM00000242275 OR5M7P +HGNC:14846 OR5M8 olfactory receptor family 5 subfamily M member 8 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 8 Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2016-10-05 219484 ENSG00000181371 OTTHUMG00000166877 uc001nix.1 AB065744 NM_001005282 CCDS31533 Q8NGP6 MGI:3030865 RGD:1333400 OR5M8 OR5M8 +HGNC:15294 OR5M9 olfactory receptor family 5 subfamily M member 9 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 9 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 390162 ENSG00000150269 OTTHUMG00000166874 uc010rjj.2 AB065747 NM_001004743 CCDS31531 Q8NGP3 "MGI:3030868|MGI:3030870" RGD:1332647 OR5M9 OR5M9 +HGNC:15290 OR5M10 olfactory receptor family 5 subfamily M member 10 protein-coding gene gene with protein product Approved 11q11 11q11 olfactory receptor, family 5, subfamily M, member 10 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 390167 ENSG00000254834 OTTHUMG00000166862 uc001niz.1 BK004515 NM_001004741 CCDS53630 Q6IEU7 "MGI:3030856|MGI:3030857" OR5M10 OR5M10 +HGNC:15291 OR5M11 olfactory receptor family 5 subfamily M member 11 protein-coding gene gene with protein product Approved 11q11 11q11 OR11-199 olfactory receptor, family 5, subfamily M, member 11 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 219487 ENSG00000255223 OTTHUMG00000166861 uc010rjl.2 AP002517 NM_001005245 CCDS53629 Q96RB7 "MGI:3030863|MGI:3031368" RGD:1332745 OR5M11 OR5M11 +HGNC:15292 OR5M12P olfactory receptor family 5 subfamily M member 12 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 12 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81188 ENSG00000197866 OTTHUMG00000154214 NG_004190 PGOHUM00000242731 OR5M12P +HGNC:15293 OR5M13P olfactory receptor family 5 subfamily M member 13 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily M, member 13 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81187 ENSG00000166693 OTTHUMG00000154216 AF179769 NG_002281 PGOHUM00000242279 OR5M13P +HGNC:15057 OR5M14P olfactory receptor family 5 subfamily M member 14 pseudogene pseudogene pseudogene Approved 4p13 04p13 OR5M15P olfactory receptor, family 5, subfamily M, member 14 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81421 ENSG00000249081 OTTHUMG00000160534 AC013359 NG_004263 PGOHUM00000245504 OR5M14P +HGNC:14779 OR5P1P olfactory receptor family 5 subfamily P member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 5, subfamily P, member 1 pseudogene Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 79283 ENSG00000166408 OTTHUMG00000154322 NG_004139 PGOHUM00000242163 OR5P1P +HGNC:14783 OR5P2 olfactory receptor family 5 subfamily P member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 JCG3 olfactory receptor, family 5, subfamily P, member 2 Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 120065 ENSG00000183303 OTTHUMG00000165668 uc001mfp.2 AF173006 NM_153444 CCDS7782 Q8WZ92 MGI:3030336 OR5P2 OR5P2 +HGNC:14784 OR5P3 olfactory receptor family 5 subfamily P member 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 JCG1 olfactory receptor, family 5, subfamily P, member 3 Olfactory receptors, family 5 152 2001-02-28 2015-12-09 2015-12-09 120066 ENSG00000182334 OTTHUMG00000165669 uc010rbg.2 AF158377 NM_153445 CCDS7783 Q8WZ94 "MGI:3030314|MGI:3030342" OR5P3 OR5P3 +HGNC:15295 OR5P4P olfactory receptor family 5 subfamily P member 4 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OST730 olfactory receptor, family 5, subfamily P, member 4 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 81185 ENSG00000227892 OTTHUMG00000154328 NG_004189 PGOHUM00000242584 OR5P4P +HGNC:14841 OR5R1 olfactory receptor family 5 subfamily R member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR5R1P olfactory receptor, family 5, subfamily R, member 1 (gene/pseudogene) Olfactory receptors, family 5 152 2001-02-28 2004-03-10 2015-12-09 2016-10-11 219479 ENSG00000279961 OTTHUMG00000154219 uc010rji.2 AB065504 NM_001004744 Q8NH85 MGI:3030872 RGD:1332967 OR5R1 OR5R1 +HGNC:15040 OR5S1P olfactory receptor family 5 subfamily S member 1 pseudogene pseudogene pseudogene Approved 2q37.3 02q37.3 olfactory receptor, family 5, subfamily S, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2015-12-09 391496 ENSG00000213048 OTTHUMG00000152396 NG_004369 PGOHUM00000241154 OR5S1P +HGNC:14821 OR5T1 olfactory receptor family 5 subfamily T member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR5T1P olfactory receptor, family 5, subfamily T, member 1 Olfactory receptors, family 5 152 2001-02-28 2004-03-10 2015-12-09 2016-10-05 390155 ENSG00000181698 OTTHUMG00000166853 uc001nio.1 AB065962 NM_001004745 CCDS31525 Q8NG75 OR5T1 OR5T1 +HGNC:15296 OR5T2 olfactory receptor family 5 subfamily T member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily T, member 2 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 219464 ENSG00000181718 OTTHUMG00000166851 uc010rjc.2 AB065838 NM_001004746 CCDS31523 Q8NGG2 MGI:3030920 RGD:1334282 OR5T2 OR5T2 +HGNC:15297 OR5T3 olfactory receptor family 5 subfamily T member 3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR5T3Q olfactory receptor, family 5, subfamily T, member 3 Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 390154 ENSG00000172489 OTTHUMG00000166852 uc010rjd.2 AB065837 NM_001004747 CCDS31524 Q8NGG3 MGI:3030927 RGD:1334112 OR5T3 OR5T3 +HGNC:13972 OR5V1 olfactory receptor family 5 subfamily V member 1 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 hs6M1-21 olfactory receptor, family 5, subfamily V, member 1 Olfactory receptors, family 5 152 2001-04-03 2015-12-09 2015-12-09 81696 ENSG00000243729 OTTHUMG00000031199 uc063xco.1 XM_011514929 CCDS4657 Q9UGF6 "MGI:2177493|MGI:2177494" RGD:1334062 OR5V1 OR5V1 +HGNC:15298 OR5W1P olfactory receptor family 5 subfamily W member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 5, subfamily W, member 1 pseudogene Olfactory receptors, family 5 152 2001-03-28 2015-12-09 2016-10-05 81182 ENSG00000227806 OTTHUMG00000154235 NG_004188 PGOHUM00000262183 OR5W1P +HGNC:15299 OR5W2 olfactory receptor family 5 subfamily W member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "OR5W2P|OR5W3P" olfactory receptor, family 5, subfamily W, member 2 Olfactory receptors, family 5 152 2001-03-28 2004-03-10 2015-12-09 2016-10-05 390148 ENSG00000187612 OTTHUMG00000166818 uc010rir.2 BK004398 NM_001001960 CCDS31513 Q8NH69 MGI:3030985 RGD:1332686 OR5W2 OR5W2 +HGNC:15301 OR6A2 olfactory receptor family 6 subfamily A member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR11-55 "OR6A2P|OR6A1" olfactory receptor, family 6, subfamily A, member 2 Olfactory receptors, family 6 153 2001-03-28 2004-03-10 2015-12-09 2015-12-09 8590 ENSG00000184933 OTTHUMG00000165736 uc001mes.2 AB065822 NM_003696 CCDS7772 O95222 MGI:97432 RGD:6493071 OR6A2 608495 OR6A2 +HGNC:8354 OR6B1 olfactory receptor family 6 subfamily B member 1 protein-coding gene gene with protein product Approved 7q35 07q35 OR7-3 olfactory receptor, family 6, subfamily B, member 1 Olfactory receptors, family 6 153 1999-12-09 2015-12-09 2016-10-05 135946 ENSG00000221813 OTTHUMG00000157765 uc003wdt.2 NM_001005281 CCDS43667 O95007 MGI:3030283 RGD:1333367 OR6B1 OR6B1 +HGNC:15041 OR6B2 olfactory receptor family 6 subfamily B member 2 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 OR6B2P "olfactory receptor, family 6, subfamily B, member 2 pseudogene|olfactory receptor, family 6, subfamily B, member 2" Olfactory receptors, family 6 153 2001-03-28 2004-10-07 2015-12-09 2015-12-09 389090 ENSG00000182083 OTTHUMG00000152400 uc010zoc.3 NM_001005853 CCDS46559 Q6IFH4 "MGI:3031249|MGI:3031250" OR6B2 OR6B2 +HGNC:15042 OR6B3 olfactory receptor family 6 subfamily B member 3 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 OR6B3Q OR6B3P "olfactory receptor, family 6, subfamily B, member 3 pseudogene|olfactory receptor, family 6, subfamily B, member 3" Olfactory receptors, family 6 153 2001-03-28 2002-11-15 2015-12-09 2015-12-09 150681 ENSG00000178586 OTTHUMG00000152399 uc010zoe.2 XM_011510671 CCDS42837 Q8NGW1 MGI:3031248 RGD:1332746 OR6B3 OR6B3 +HGNC:8355 OR6C1 olfactory receptor family 6 subfamily C member 1 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 OST267 olfactory receptor, family 6, subfamily C, member 1 Olfactory receptors, family 6 153 1999-12-09 2015-12-09 2016-10-05 390321 ENSG00000205330 OTTHUMG00000168102 uc010spi.3 AF399506 NM_001005182 CCDS31818 Q96RD1 "MGI:3030620|MGI:3030636" RGD:1334017 OR6C1 OR6C1 +HGNC:15436 OR6C2 olfactory receptor family 6 subfamily C member 2 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 OR6C67 olfactory receptor, family 6, subfamily C, member 2 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 341416 ENSG00000179695 OTTHUMG00000169957 uc001sgz.1 AF179766 NM_054105 CCDS31824 Q9NZP2 "MGI:3030603|MGI:3030625" RGD:1334254 OR6C2 OR6C2 +HGNC:15437 OR6C3 olfactory receptor family 6 subfamily C member 3 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 OST709 olfactory receptor, family 6, subfamily C, member 3 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 254786 ENSG00000205329 OTTHUMG00000169861 uc010spj.2 AF179770 NM_054104 CCDS31819 Q9NZP0 "MGI:3030622|MGI:3030637" RGD:1333196 OR6C3 OR6C3 +HGNC:19632 OR6C4 olfactory receptor family 6 subfamily C member 4 protein-coding gene gene with protein product Approved 12q14.2 12q14.2 olfactory receptor, family 6, subfamily C, member 4 Olfactory receptors, family 6 153 2002-11-04 2015-12-09 2015-12-09 341418 ENSG00000179626 OTTHUMG00000169959 uc010spp.3 BK004261 NM_001005494 CCDS31827 Q8NGE1 RGD:1333670 OR6C4 OR6C4 +HGNC:31292 OR6C5P olfactory receptor family 6 subfamily C member 5 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 5 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 390320 ENSG00000230307 OTTHUMG00000154364 NG_004345 PGOHUM00000239801 OR6C5P +HGNC:31293 OR6C6 olfactory receptor family 6 subfamily C member 6 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 6 Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2016-10-05 283365 ENSG00000188324 OTTHUMG00000168101 uc010sph.2 NM_001005493 CCDS31817 A6NF89 "MGI:3030613|MGI:3030616|MGI:3030638" RGD:1334418 OR6C6 OR6C6 +HGNC:31306 OR6C7P olfactory receptor family 6 subfamily C member 7 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 7 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 390322 ENSG00000257757 OTTHUMG00000169885 NG_004346 PGOHUM00000239802 OR6C7P +HGNC:31294 OR6C64P olfactory receptor family 6 subfamily C member 64 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 64 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 403281 ENSG00000234670 OTTHUMG00000154363 NG_004429 PGOHUM00000239805 OR6C64P +HGNC:31295 OR6C65 olfactory receptor family 6 subfamily C member 65 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 65 Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 403282 ENSG00000205328 OTTHUMG00000169955 uc010spl.3 NM_001005518 CCDS31821 A6NJZ3 MGI:3030642 RGD:1332643 OR6C65 OR6C65 +HGNC:31296 OR6C66P olfactory receptor family 6 subfamily C member 66 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 66 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 403283 ENSG00000233606 OTTHUMG00000154365 NG_004430 PGOHUM00000239803 OR6C66P +HGNC:31297 OR6C68 olfactory receptor family 6 subfamily C member 68 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 68 Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2016-04-25 403284 ENSG00000205327 OTTHUMG00000169958 uc031qhq.1 NM_001005519 CCDS31826 A6NDL8 MGI:3030614 RGD:1333022 OR6C68 OR6C68 +HGNC:31298 OR6C69P olfactory receptor family 6 subfamily C member 69 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 69 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 403285 ENSG00000213451 OTTHUMG00000154374 NG_004431 PGOHUM00000239799 OR6C69P +HGNC:31299 OR6C70 olfactory receptor family 6 subfamily C member 70 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 70 Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 390327 ENSG00000184954 OTTHUMG00000171127 uc010spn.2 NM_001005499 CCDS31825 A6NIJ9 MGI:3030648 RGD:1333363 OR6C70 OR6C70 +HGNC:31300 OR6C71P olfactory receptor family 6 subfamily C member 71 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 71 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 390324 ENSG00000203408 OTTHUMG00000154366 NG_004347 PGOHUM00000239468 OR6C71P +HGNC:31301 OR6C72P olfactory receptor family 6 subfamily C member 72 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 72 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 403288 ENSG00000205331 OTTHUMG00000154372 NG_004432 PGOHUM00000239800 OR6C72P +HGNC:31302 OR6C73P olfactory receptor family 6 subfamily C member 73 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 73 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 403289 ENSG00000257414 OTTHUMG00000169954 NG_004433 PGOHUM00000239804 OR6C73P +HGNC:31303 OR6C74 olfactory receptor family 6 subfamily C member 74 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 74 Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2016-10-05 254783 ENSG00000197706 OTTHUMG00000165162 uc010spg.3 XM_017019126 CCDS31816 A6NCV1 MGI:3030655 RGD:6495916 OR6C74 OR6C74 +HGNC:31304 OR6C75 olfactory receptor family 6 subfamily C member 75 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 75 Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 390323 ENSG00000187857 OTTHUMG00000169886 uc010spk.2 NM_001005497 CCDS31820 A6NL08 MGI:3030624 OR6C75 OR6C75 +HGNC:31305 OR6C76 olfactory receptor family 6 subfamily C member 76 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 6, subfamily C, member 76 Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2015-12-09 390326 ENSG00000185821 OTTHUMG00000169956 uc010spm.2 NM_001005183 CCDS31823 A6NM76 "MGI:3030643|MGI:3030647" RGD:1334198 OR6C76 OR6C76 +HGNC:14849 OR6D1P olfactory receptor family 6 subfamily D member 1 pseudogene pseudogene pseudogene Approved 10q11.21 10q11.21 olfactory receptor, family 6, subfamily D, member 1 pseudogene Olfactory receptors, family 6 153 2001-02-28 2015-12-09 2015-12-09 220974 ENSG00000224402 OTTHUMG00000018079 AL358394 NG_004293 PGOHUM00000238765 OR6D1P +HGNC:15123 OR6D2P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:14739 OR6E1P olfactory receptor family 6 subfamily E member 1 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 6, subfamily E, member 1 pseudogene Olfactory receptors, family 6 153 2001-02-28 2015-12-09 2015-12-09 79323 ENSG00000235213 OTTHUMG00000154330 NG_002244 PGOHUM00000248108 OR6E1P +HGNC:15027 OR6F1 olfactory receptor family 6 subfamily F member 1 protein-coding gene gene with protein product Approved 1q44 01q44 OST731 olfactory receptor, family 6, subfamily F, member 1 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 343169 ENSG00000169214 OTTHUMG00000040213 uc001idj.1 BK004460 NM_001005286 CCDS31095 Q8NGZ6 MGI:3030142 RGD:6500576 OR6F1 OR6F1 +HGNC:14707 OR6J1 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "OR6J2|OR6J1P" "olfactory receptor, family 6, subfamily J, member 1|olfactory receptor, family 6, subfamily J, member 1 (gene/pseudogene)" Olfactory receptors, family 6 153 2001-02-28 2004-03-10 2015-12-09 2015-12-09 79549 ENSG00000255804 OTTHUMG00000168897 uc058zia.1 AC023226 NG_002274 Q8NGC5 OR6J1 +HGNC:15028 OR6K1P olfactory receptor family 6 subfamily K member 1 pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily K, member 1 pseudogene Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 81449 ENSG00000231237 OTTHUMG00000022773 NG_004271 PGOHUM00000244297 OR6K1P +HGNC:15029 OR6K2 olfactory receptor family 6 subfamily K member 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily K, member 2 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 81448 ENSG00000196171 OTTHUMG00000022768 uc001fsu.1 BK004196 NM_001005279 CCDS30902 Q8NGY2 MGI:3030254 RGD:1333784 OR6K2 OR6K2 +HGNC:15030 OR6K3 olfactory receptor family 6 subfamily K member 3 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily K, member 3 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2016-04-25 391114 ENSG00000203757 OTTHUMG00000022770 uc021pbn.1 AB065633 NM_001005327 CCDS30903 Q8NGY3 RGD:1332672 OR6K3 OR6K3 +HGNC:15031 OR6K4P olfactory receptor family 6 subfamily K member 4 pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily K, member 4 pseudogene Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 128370 ENSG00000180437 OTTHUMG00000022777 NG_004288 OR6K4P +HGNC:15032 OR6K5P olfactory receptor family 6 subfamily K member 5 pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily K, member 5 pseudogene Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 391115 ENSG00000226949 OTTHUMG00000022778 NG_004363 PGOHUM00000244299 OR6K5P +HGNC:15033 OR6K6 olfactory receptor family 6 subfamily K member 6 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily K, member 6 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 128371 ENSG00000180433 OTTHUMG00000022772 uc001fsw.2 BK004198 NM_001005184 CCDS30904 Q8NGW6 MGI:3030065 RGD:1333957 OR6K6 OR6K6 +HGNC:15124 OR6L1P olfactory receptor family 6 subfamily L member 1 pseudogene pseudogene pseudogene Approved 10q26.3 10q26.3 olfactory receptor, family 6, subfamily L, member 1 pseudogene Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2016-08-17 390012 ENSG00000233685 OTTHUMG00000019327 Z96427 NG_002282 PGOHUM00000290025 OR6L1P +HGNC:15125 OR6L2P olfactory receptor family 6 subfamily L member 2 pseudogene pseudogene pseudogene Approved 10q26.3 10q26.3 olfactory receptor, family 6, subfamily L, member 2 pseudogene Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2016-08-17 81356 ENSG00000273327 OTTHUMG00000185916 NG_004252 PGOHUM00000290024 OR6L2P +HGNC:14711 OR6M1 olfactory receptor family 6 subfamily M member 1 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 olfactory receptor, family 6, subfamily M, member 1 Olfactory receptors, family 6 153 2001-02-28 2015-12-09 2015-12-09 390261 ENSG00000196099 OTTHUMG00000166012 uc010rzz.3 AB065762 NM_001005325 CCDS31696 Q8NGM8 OR6M1 OR6M1 +HGNC:14713 OR6M2P olfactory receptor family 6 subfamily M member 2 pseudogene pseudogene pseudogene Approved 11q24.1 11q24.1 olfactory receptor, family 6, subfamily M, member 2 pseudogene Olfactory receptors, family 6 153 2001-02-28 2015-12-09 2015-12-09 79546 ENSG00000254613 OTTHUMG00000166013 NG_004155 PGOHUM00000242519 OR6M2P +HGNC:14741 OR6M3P olfactory receptor family 6 subfamily M member 3 pseudogene pseudogene pseudogene Approved 11q24.1 11q24.1 olfactory receptor, family 6, subfamily M, member 3 pseudogene Olfactory receptors, family 6 153 2001-02-28 2015-12-09 2015-12-09 79321 ENSG00000254430 OTTHUMG00000166014 NG_004140 PGOHUM00000242520 OR6M3P +HGNC:15034 OR6N1 olfactory receptor family 6 subfamily N member 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily N, member 1 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 128372 ENSG00000197403 OTTHUMG00000022774 uc010piq.2 BK004199 NM_001005185 CCDS30905 Q8NGY5 MGI:3030263 RGD:1334435 OR6N1 OR6N1 +HGNC:15035 OR6N2 olfactory receptor family 6 subfamily N member 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily N, member 2 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 81442 ENSG00000188340 OTTHUMG00000022775 uc010pir.2 BK004200 NM_001005278 CCDS30906 Q8NGY6 MGI:3030264 RGD:1333597 OR6N2 OR6N2 +HGNC:15036 OR6P1 olfactory receptor family 6 subfamily P member 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 6, subfamily P, member 1 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 128366 ENSG00000186440 OTTHUMG00000019633 uc010pim.2 BK004193 NM_001160325 CCDS53391 Q8NGX9 MGI:3030248 RGD:1332986 OR6P1 OR6P1 +HGNC:15302 OR6Q1 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 6, subfamily Q, member 1 (gene/pseudogene) Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2016-10-10 219952 ENSG00000279051 OTTHUMG00000168831 uc010rjz.2 AB065737 NM_001005186 CCDS31541 Q8NGQ2 RGD:1333221 OR6Q1 OR6Q1 +HGNC:15037 OR6R1P olfactory receptor family 6 subfamily R member 1 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 6, subfamily R, member 1 pseudogene Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 81440 ENSG00000230576 OTTHUMG00000040202 NG_004270 PGOHUM00000259537 OR6R1P +HGNC:31307 OR6R2P olfactory receptor family 6 subfamily R member 2 pseudogene pseudogene pseudogene Approved 8p21.3 08p21.3 olfactory receptor, family 6, subfamily R, member 2 pseudogene Olfactory receptors, family 6 153 2004-02-26 2015-12-09 2016-08-17 403294 ENSG00000273484 OTTHUMG00000185882 NG_004434 PGOHUM00000303478 OR6R2P +HGNC:15363 OR6S1 olfactory receptor family 6 subfamily S member 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 OR6S1Q olfactory receptor, family 6, subfamily S, member 1 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 341799 ENSG00000181803 OTTHUMG00000171010 uc001vxv.1 AL163636 NM_001001968 CCDS32038 Q8NH40 MGI:3030584 RGD:1333368 OR6S1 OR6S1 +HGNC:14848 OR6T1 olfactory receptor family 6 subfamily T member 1 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 olfactory receptor, family 6, subfamily T, member 1 Olfactory receptors, family 6 153 2001-02-28 2015-12-09 2015-12-09 219874 ENSG00000181499 OTTHUMG00000165962 uc010sab.3 AB065759 NM_001005187 CCDS31700 Q8NGN1 RGD:6495778 OR6T1 OR6T1 +HGNC:19631 OR6U2P olfactory receptor family 6 subfamily U member 2 pseudogene pseudogene pseudogene Approved 12q14.2 12q14.2 OR6U1P olfactory receptor, family 6, subfamily U, member 2 pseudogene Olfactory receptors, family 6 153 2002-11-04 2015-12-09 2015-12-09 390329 ENSG00000272937 OTTHUMG00000185940 NG_004348 PGOHUM00000239806 OR6U2P +HGNC:15090 OR6V1 olfactory receptor family 6 subfamily V member 1 protein-coding gene gene with protein product Approved 7q34 07q34 GPR138 olfactory receptor, family 6, subfamily V, member 1 Olfactory receptors, family 6 153 2001-03-28 2015-12-09 2015-12-09 346517 ENSG00000225781 OTTHUMG00000158385 uc011ksv.3 NM_001001667 CCDS47728 Q8N148 12732197 OR6V1 OR6V1 +HGNC:15091 OR6W1P olfactory receptor family 6 subfamily W member 1 pseudogene pseudogene pseudogene Approved 7q34 07q34 sdolf OR6W1 olfactory receptor, family 6, subfamily W, member 1 pseudogene Olfactory receptors, family 6 153 2001-03-28 2004-03-10 2015-12-09 2015-12-09 89883 ENSG00000179420 OTTHUMG00000158389 AF286696 NR_002140 OR6W1P PGOHUM00000250914 OR6W1P +HGNC:14737 OR6X1 olfactory receptor family 6 subfamily X member 1 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 olfactory receptor, family 6, subfamily X, member 1 Olfactory receptors, family 6 153 2001-02-28 2015-12-09 2015-12-09 390260 ENSG00000221931 OTTHUMG00000166011 uc010rzy.3 AB065510 NM_001005188 CCDS31695 Q8NH79 MGI:3030820 RGD:1334385 OR6X1 OR6X1 +HGNC:14823 OR6Y1 olfactory receptor family 6 subfamily Y member 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 OR6Y2 olfactory receptor, family 6, subfamily Y, member 1 Olfactory receptors, family 6 153 2001-02-28 2015-12-09 2015-12-09 391112 ENSG00000197532 OTTHUMG00000019629 uc010pil.2 BK004192 NM_001005189 CCDS30899 Q8NGX8 MGI:3030054 RGD:1334224 OR6Y1 OR6Y1 +HGNC:8364 OR7A1P olfactory receptor family 7 subfamily A member 1 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 "OR19-3|OLF4p|hg513" OR7A6P olfactory receptor, family 7, subfamily A, member 1 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2016-07-26 390895 ENSG00000268834 OTTHUMG00000183347 NG_004361 PGOHUM00000294889 OR7A1P +HGNC:8370 OR7A2P olfactory receptor family 7 subfamily A member 2 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 "hg1003|OR19-18|OLF4p" "OR7A7|OR7A2" olfactory receptor, family 7, subfamily A, member 2 pseudogene Olfactory receptors, family 7 154 1999-12-09 2004-03-10 2015-12-09 2016-07-26 390894 ENSG00000172148 OTTHUMG00000183414 NG_004087 Q8NGA2 OR7A2P PGOHUM00000294887 OR7A2P +HGNC:8366 OR7A3P olfactory receptor family 7 subfamily A member 3 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 "OR11-7b|OR19-12|OR14-59|OR14-11" "OR7A12P|OR7A14P|OR7A14|OR7A13P" olfactory receptor, family 7, subfamily A, member 3 pseudogene Olfactory receptors, family 7 154 1998-11-09 2015-12-09 2015-12-09 26668 ENSG00000269787 OTTHUMG00000183348 AF065859 NG_002170 9787077 PGOHUM00000263632 OR7A3P +HGNC:8368 OR7A5 olfactory receptor family 7 subfamily A member 5 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 HTPCR2 "olfactory receptor, family 7, subfamily A, member 5 pseudogene|olfactory receptor, family 7, subfamily A, member 5" Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26659 ENSG00000188269 OTTHUMG00000183410 uc010xoa.2 X64976 NM_017506 CCDS12318 Q15622 MGI:1333808 RGD:1333658 OR7A5 OR7A5 +HGNC:8371 OR7A8P olfactory receptor family 7 subfamily A member 8 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 "OST042|HG83|OR19-11" OR7A9P olfactory receptor, family 7, subfamily A, member 8 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2016-07-26 26661 ENSG00000269552 OTTHUMG00000183413 AF399434 NG_003166 PGOHUM00000294886 OR7A8P +HGNC:8356 OR7A10 olfactory receptor family 7 subfamily A member 10 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 olfactory receptor, family 7, subfamily A, member 10 Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 390892 ENSG00000127515 OTTHUMG00000183412 uc002mzx.1 NM_001005190 CCDS32936 O76100 RGD:1332740 OR7A10 OR7A10 +HGNC:8357 OR7A11P olfactory receptor family 7 subfamily A member 11 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 OST527 OR7A11 olfactory receptor, family 7, subfamily A, member 11 pseudogene Olfactory receptors, family 7 154 1999-12-09 2001-06-25 2015-12-09 2015-12-09 26669 ENSG00000198367 OTTHUMG00000154276 NG_002215 PGOHUM00000295218 OR7A11P +HGNC:8361 OR7A15P olfactory receptor family 7 subfamily A member 15 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 "OR19-134|OR19-1|OR19-146" "OR7A4P|OR7A16P|OR7A20P" olfactory receptor, family 7, subfamily A, member 15 pseudogene Olfactory receptors, family 7 154 1999-11-26 2015-12-09 2015-12-09 26335 ENSG00000176923 OTTHUMG00000183349 U86253 NG_002311 9500546 PGOHUM00000295219 OR7A15P +HGNC:8363 OR7A17 olfactory receptor family 7 subfamily A member 17 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 HTPCRX19 olfactory receptor, family 7, subfamily A, member 17 Olfactory receptors, family 7 154 1999-11-26 2015-12-09 2015-12-09 26333 ENSG00000185385 OTTHUMG00000183415 uc010xob.3 X64993 NM_030901 CCDS12319 O14581 1370859 MGI:109316 OR7A17 OR7A17 +HGNC:15399 OR7A18P olfactory receptor family 7 subfamily A member 18 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 olfactory receptor, family 7, subfamily A, member 18 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81081 ENSG00000269678 OTTHUMG00000183346 NG_002278 PGOHUM00000234175 OR7A18P +HGNC:15337 OR7A19P olfactory receptor family 7 subfamily A member 19 pseudogene pseudogene pseudogene Approved 12q13.11 12q13.11 olfactory receptor, family 7, subfamily A, member 19 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 387853 ENSG00000272963 OTTHUMG00000185953 AC008035 NG_004313 PGOHUM00000263568 OR7A19P +HGNC:8373 OR7C1 olfactory receptor family 7 subfamily C member 1 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 OR19-5 OR7C4 olfactory receptor, family 7, subfamily C, member 1 Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26664 ENSG00000127530 OTTHUMG00000183411 uc010xnz.3 X89676 XM_011527915 CCDS12317 O76099 MGI:3031186 OR7C1 OR7C1 +HGNC:8374 OR7C2 olfactory receptor family 7 subfamily C member 2 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 OR19-18 OR7C3 olfactory receptor, family 7, subfamily C, member 2 Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26658 ENSG00000127529 OTTHUMG00000183350 uc010xoc.2 U86255 NM_012377 CCDS12320 O60412 MGI:3031190 RGD:1334014 OR7C2 OR7C2 +HGNC:8377 OR7D1P olfactory receptor family 7 subfamily D member 1 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 OR19-A "OR7D3P|OR7D3" olfactory receptor, family 7, subfamily D, member 1 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26656 ENSG00000188314 OTTHUMG00000179937 U86251 NG_002212 9500546 PGOHUM00000263458 OR7D1P +HGNC:8378 OR7D2 olfactory receptor family 7 subfamily D member 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "OR19-4|HTPCRH03|FLJ38149" olfactory receptor, family 7, subfamily D, member 2 Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 162998 ENSG00000188000 OTTHUMG00000179934 uc002mkz.1 AK095468 NM_175883 CCDS32900 Q96RA2 RGD:2320667 OR7D2 OR7D2 +HGNC:8380 OR7D4 olfactory receptor family 7 subfamily D member 4 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "hg105|OR19-B" OR7D4P olfactory receptor, family 7, subfamily D, member 4 Olfactory receptors, family 7 154 1999-12-09 2004-03-10 2015-12-09 2015-12-09 125958 ENSG00000174667 OTTHUMG00000179936 uc002mla.2 NM_001005191 CCDS32901 Q8NG98 MGI:1313142 RGD:6491757 OR7D4 611538 OR7D4 +HGNC:31308 OR7D11P olfactory receptor family 7 subfamily D member 11 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 olfactory receptor, family 7, subfamily D, member 11 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 403295 OTTHUMG00000179937 NG_005822 PGOHUM00000234487 +HGNC:8391 OR7E1P olfactory receptor family 7 subfamily E member 1 pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 olfactory receptor, family 7, subfamily E, member 1 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 341128 ENSG00000255554 OTTHUMG00000167471 NG_004307 PGOHUM00000250381 OR7E1P +HGNC:8402 OR7E2P olfactory receptor family 7 subfamily E member 2 pseudogene pseudogene pseudogene Approved 11q14.2 11q14.2 "OR11-6|hg94" "OR7F2P|OR7E51P" olfactory receptor, family 7, subfamily E, member 2 pseudogene Olfactory receptors, family 7 154 1998-11-09 2015-12-09 2015-12-09 8587 ENSG00000255203 OTTHUMG00000167228 AF065857 NR_045004 9787077 PGOHUM00000242396 OR7E2P +HGNC:8424 OR7E4P olfactory receptor family 7 subfamily E member 4 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 OR11-11a OR7F4P olfactory receptor, family 7, subfamily E, member 4 pseudogene Olfactory receptors, family 7 154 1998-11-09 2015-12-09 2015-12-09 8585 ENSG00000255261 OTTHUMG00000167456 AF065864 NG_002162 9787077 PGOHUM00000257896 OR7E4P +HGNC:8435 OR7E5P olfactory receptor family 7 subfamily E member 5 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 "OR11-12|FLJ31393" OR7F5P olfactory receptor, family 7, subfamily E, member 5 pseudogene Olfactory receptors, family 7 154 1998-11-09 2015-12-09 2015-12-09 219445 ENSG00000214880 OTTHUMG00000166911 AK055955 NR_027688 9787077 OR7E5P PGOHUM00000257822 OR7E5P +HGNC:8457 OR7E7P olfactory receptor family 7 subfamily E member 7 pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 olfactory receptor, family 7, subfamily E, member 7 pseudogene Olfactory receptors, family 7 154 1999-12-07 2015-12-09 2015-12-09 392752 ENSG00000238228 OTTHUMG00000154185 NG_002208 PGOHUM00000260275 OR7E7P +HGNC:8458 OR7E8P olfactory receptor family 7 subfamily E member 8 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 OR11-11a olfactory receptor, family 7, subfamily E, member 8 pseudogene Olfactory receptors, family 7 154 1999-12-07 2015-12-09 2016-08-17 346708 ENSG00000177400 OTTHUMG00000165467 AB065553 NG_002207 PGOHUM00000303110 OR7E8P +HGNC:8459 OR7E9P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8381 OR7E10P olfactory receptor family 7 subfamily E member 10 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 OR11-1 olfactory receptor, family 7, subfamily E, member 10 pseudogene Olfactory receptors, family 7 154 1999-07-30 2015-12-09 2016-08-17 10823 ENSG00000254724 OTTHUMG00000165469 AF399403 NG_002183 9787077 PGOHUM00000303112 OR7E10P +HGNC:8382 OR7E11P olfactory receptor family 7 subfamily E member 11 pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 OR11-2 OR7E144P olfactory receptor, family 7, subfamily E, member 11 pseudogene Olfactory receptors, family 7 154 1999-07-30 2015-12-09 2015-12-09 10822 ENSG00000254447 OTTHUMG00000167246 AF065853 NG_002181 9787077 PGOHUM00000242338 OR7E11P +HGNC:8383 OR7E12P olfactory receptor family 7 subfamily E member 12 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR11-3 "OR7E58P|OR7E79P" olfactory receptor, family 7, subfamily E, member 12 pseudogene Olfactory receptors, family 7 154 1999-07-30 2015-12-09 2015-12-09 10821 ENSG00000189398 OTTHUMG00000011703 AF065854 NR_044999 9787077 PGOHUM00000242117 OR7E12P +HGNC:8384 OR7E13P olfactory receptor family 7 subfamily E member 13 pseudogene pseudogene pseudogene Approved 11q14.2 11q14.2 OR11-4 olfactory receptor, family 7, subfamily E, member 13 pseudogene Olfactory receptors, family 7 154 1999-07-30 2015-12-09 2016-10-05 10820 ENSG00000197882 OTTHUMG00000167227 AF065855 NG_002177 9787077 PGOHUM00000242395 OR7E13P +HGNC:8385 OR7E14P olfactory receptor family 7 subfamily E member 14 pseudogene pseudogene pseudogene Approved 11p15.1 11p15.1 OR11-5 OR7E151P olfactory receptor, family 7, subfamily E, member 14 pseudogene Olfactory receptors, family 7 154 1999-07-30 2015-12-09 2015-12-09 10819 ENSG00000184669 OTTHUMG00000165955 AF065856 NR_045002 9787077 PGOHUM00000242603 OR7E14P +HGNC:8386 OR7E15P olfactory receptor family 7 subfamily E member 15 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 "OR11-392|OST001" "OR7E80P|OR7E42P" olfactory receptor, family 7, subfamily E, member 15 pseudogene Olfactory receptors, family 7 154 1998-11-09 2015-12-09 2016-08-17 8588 ENSG00000254917 OTTHUMG00000165468 AF065873 NG_002168 9787077 PGOHUM00000303111 OR7E15P +HGNC:8387 OR7E16P olfactory receptor family 7 subfamily E member 16 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 "OR19-133|OR19-9" "OR7E60P|OR7E17P" olfactory receptor, family 7, subfamily E, member 16 pseudogene Olfactory receptors, family 7 154 1999-11-29 2015-12-09 2016-07-26 26473 ENSG00000267775 OTTHUMG00000179935 U86252 NG_002189 9500546 PGOHUM00000295184 OR7E16P +HGNC:8389 OR7E18P olfactory receptor family 7 subfamily E member 18 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 "OR19-14|TPCR26" "OR7E61|OR7E98P" olfactory receptor, family 7, subfamily E, member 18 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2016-07-26 390885 ENSG00000180926 OTTHUMG00000179939 NG_004360 PGOHUM00000294866 OR7E18P +HGNC:8390 OR7E19P olfactory receptor family 7 subfamily E member 19 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 OR19-7 OR7E65 olfactory receptor, family 7, subfamily E, member 19 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26651 ENSG00000225980 OTTHUMG00000179940 NG_002356 PGOHUM00000250556 OR7E19P +HGNC:8393 OR7E21P olfactory receptor family 7 subfamily E member 21 pseudogene pseudogene pseudogene Approved 3p13 03p13 "OR4DG|OST035" "OR7E49P|OR7E127P" olfactory receptor, family 7, subfamily E, member 21 pseudogene Olfactory receptors, family 7 154 1999-04-09 2015-12-09 2015-12-09 9432 ENSG00000251178 OTTHUMG00000159728 NG_004123 10036190 OR7E21P +HGNC:8394 OR7E22P olfactory receptor family 7 subfamily E member 22 pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 "OR6DG|OR3.6" olfactory receptor, family 7, subfamily E, member 22 pseudogene Olfactory receptors, family 7 154 1999-04-09 2015-12-09 2015-12-09 9431 ENSG00000179799 OTTHUMG00000158823 AF042089 NG_004122 10036190 PGOHUM00000250244 OR7E22P +HGNC:8395 OR7E23P olfactory receptor family 7 subfamily E member 23 pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 OR21-3 OR7E92P olfactory receptor, family 7, subfamily E, member 23 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2016-10-05 391279 ENSG00000228433 OTTHUMG00000064927 AF399396 NG_004368 PGOHUM00000239165 OR7E23P +HGNC:8396 OR7E24 olfactory receptor family 7 subfamily E member 24 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "OR19-8|HSHT2|OR7E24Q" OR7E24P "olfactory receptor, family 7, subfamily E, member 24 pseudogene|olfactory receptor, family 7, subfamily E, member 24" Olfactory receptors, family 7 154 1999-12-09 2004-03-05 2015-12-09 2015-12-09 26648 ENSG00000237521 OTTHUMG00000179938 uc002mlb.2 Y10529 NM_001079935 CCDS45955 Q6IFN5 9268701 MGI:3030707 RGD:1591011 OR7E24 OR7E24 +HGNC:8397 OR7E25P olfactory receptor family 7 subfamily E member 25 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 "OR19-C|CIT-B-440L2" olfactory receptor, family 7, subfamily E, member 25 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2016-07-26 26647 ENSG00000187847 OTTHUMG00000154384 NG_004132 PGOHUM00000295185 OR7E25P +HGNC:8398 OR7E26P olfactory receptor family 7 subfamily E member 26 pseudogene pseudogene pseudogene Approved 10p13 10p13 "OR1-51|OR1-72|OR1-73|OR912-95" "OR7E67P|OR7E69P|OR7E70P|OR7E68P" olfactory receptor, family 7, subfamily E, member 26 pseudogene Olfactory receptors, family 7 154 1999-11-29 2015-12-09 2015-12-09 401637 ENSG00000228547 OTTHUMG00000017721 U86301 NG_002315 9500546 PGOHUM00000238360 OR7E26P +HGNC:8400 OR7E28P olfactory receptor family 7 subfamily E member 28 pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 "OST128|hg616" "OR7E133P|OR7E107P|OR7E27P" olfactory receptor, family 7, subfamily E, member 28 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26645 ENSG00000251491 OTTHUMG00000153968 NG_004131 PGOHUM00000240999 OR7E28P +HGNC:8401 OR7E29P olfactory receptor family 7 subfamily E member 29 pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 OST032 olfactory receptor, family 7, subfamily E, member 29 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26644 ENSG00000243429 OTTHUMG00000159569 NG_004130 OR7E29P +HGNC:8403 OR7E30P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8404 OR7E31P olfactory receptor family 7 subfamily E member 31 pseudogene pseudogene pseudogene Approved 9q22.2 09q22.2 OST205 OR7E32P olfactory receptor, family 7, subfamily E, member 31 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 375601 ENSG00000185074 OTTHUMG00000020192 NG_004666 PGOHUM00000236692 OR7E31P +HGNC:8406 OR7E33P olfactory receptor family 7 subfamily E member 33 pseudogene pseudogene pseudogene Approved 13q21.32 13q21.32 hg688 olfactory receptor, family 7, subfamily E, member 33 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26640 ENSG00000226537 OTTHUMG00000017043 AL353580 NG_002211 PGOHUM00000248622 OR7E33P +HGNC:8407 OR7E34P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8408 OR7E35P olfactory receptor family 7 subfamily E member 35 pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 OST018 OR7E120 olfactory receptor, family 7, subfamily E, member 35 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 391632 ENSG00000250425 OTTHUMG00000160248 NG_004371 PGOHUM00000245850 OR7E35P +HGNC:8409 OR7E36P olfactory receptor family 7 subfamily E member 36 pseudogene pseudogene pseudogene Approved 13q14.11 13q14.11 OST024 OR7E119P olfactory receptor, family 7, subfamily E, member 36 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2016-10-05 26637 ENSG00000205240 OTTHUMG00000016793 AA574056 NG_004129 PGOHUM00000248383 OR7E36P +HGNC:8410 OR7E37P olfactory receptor family 7 subfamily E member 37 pseudogene pseudogene pseudogene Approved 13q14.11 13q14.11 hg533 olfactory receptor, family 7, subfamily E, member 37 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 100506759 ENSG00000215480 OTTHUMG00000016795 AL354833 NR_002163 PGOHUM00000249954 OR7E37P +HGNC:8411 OR7E38P olfactory receptor family 7 subfamily E member 38 pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 OST127 OR7E76 olfactory receptor, family 7, subfamily E, member 38 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 389537 ENSG00000183444 OTTHUMG00000154186 NG_002209 PGOHUM00000232925 OR7E38P +HGNC:8412 OR7E39P olfactory receptor family 7 subfamily E member 39 pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 hg611 OR7E138P "olfactory receptor, family 7, subfamily E, member 138 pseudogene|olfactory receptor, family 7, subfamily E, member 39 pseudogene" Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 253933 ENSG00000273252 OTTHUMG00000185867 NG_004294 OR7E39P +HGNC:8415 OR7E41P olfactory receptor family 7 subfamily E member 41 pseudogene pseudogene pseudogene Approved 11p15.2 11p15.2 "OR11-20|hg84|OR8-126" "OR7F6P|OR7E50P|OR7E95P" olfactory receptor, family 7, subfamily E, member 41 pseudogene Olfactory receptors, family 7 154 1998-11-09 2015-12-09 2015-12-09 8583 ENSG00000250640 OTTHUMG00000164630 AF065867 NG_002158 9787077 OR7E41P +HGNC:8417 OR7E43P olfactory receptor family 7 subfamily E member 43 pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 OR4-116 olfactory receptor, family 7, subfamily E, member 43 pseudogene Olfactory receptors, family 7 154 1999-11-29 2015-12-09 2015-12-09 26475 ENSG00000249844 OTTHUMG00000159869 U86267 NG_002191 9500546 PGOHUM00000250699 OR7E43P +HGNC:8418 OR7E44P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8419 OR7E45P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8420 OR7E46P olfactory receptor family 7 subfamily E member 46 pseudogene pseudogene pseudogene Approved 2p13.3 02p13.3 "OST379|MCEEP" olfactory receptor, family 7, subfamily E, member 46 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 402077 ENSG00000234485 OTTHUMG00000154169 NG_004394 PGOHUM00000240677 OR7E46P +HGNC:8421 OR7E47P olfactory receptor family 7 subfamily E member 47 pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 OR7E141 olfactory receptor, family 7, subfamily E, member 47 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26628 ENSG00000257542 OTTHUMG00000169615 uc058ogd.1 X87825 NG_004128 8647456 PGOHUM00000239782 OR7E47P +HGNC:8422 OR7E48P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8427 OR7E52P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8428 OR7E53P olfactory receptor family 7 subfamily E member 53 pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 "OR3-143|OR3-142" "OR7E78P|OR7E78|OR7E132P" olfactory receptor, family 7, subfamily E, member 53 pseudogene Olfactory receptors, family 7 154 1999-11-29 2015-12-09 2015-12-09 26478 ENSG00000239978 OTTHUMG00000159565 U86262 NG_002316 9500546 OR7E53P +HGNC:8430 OR7E55P olfactory receptor family 7 subfamily E member 55 pseudogene pseudogene pseudogene Approved 3p13 03p13 "OR2DG|OR3.2|OST013" OR7E56P olfactory receptor, family 7, subfamily E, member 55 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 391548 ENSG00000230655 OTTHUMG00000158818 NG_004370 OR7E55P +HGNC:8432 OR7E57P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:8434 OR7E59P olfactory receptor family 7 subfamily E member 59 pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 OST119 "OR7E59|OR7E137P" olfactory receptor, family 7, subfamily E, member 59 pseudogene Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 402249 ENSG00000250561 OTTHUMG00000158490 NG_004398 OR7E59P +HGNC:8438 OR7E62P olfactory receptor family 7 subfamily E member 62 pseudogene pseudogene pseudogene Approved 2p13.3 02p13.3 "OR7E62|OR2-53|OR7E63|OR7E64" "OR7E63P|OR7E64P|OR7E82P" olfactory receptor, family 7, subfamily E, member 62 pseudogene Olfactory receptors, family 7 154 1999-11-29 2015-12-09 2015-12-09 26479 ENSG00000234896 OTTHUMG00000154168 U86259 NG_002317 9500546 PGOHUM00000240678 OR7E62P +HGNC:8442 OR7E66P olfactory receptor family 7 subfamily E member 66 pseudogene pseudogene pseudogene Approved 3p13 03p13 "hg630|HG630|OR3DG|OR3.3" "OR7E6P|OR7E20P" "olfactory receptor, family 7, subfamily E, member 6 pseudogene|olfactory receptor, family 7, subfamily E, member 20 pseudogene|olfactory receptor, family 7, subfamily E, member 66 pseudogene" Olfactory receptors, family 7 154 1999-12-09 2015-12-09 2015-12-09 26614 ENSG00000243674 OTTHUMG00000158820 NG_004127 10036190 OR7E66P +HGNC:8454 OR7E77P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15442 OR7E81P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:14688 OR7E83P olfactory receptor family 7 subfamily E member 83 pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 OR7E134P olfactory receptor, family 7, subfamily E, member 83 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 391630 ENSG00000249866 OTTHUMG00000160184 NG_002251 PGOHUM00000259932 OR7E83P +HGNC:14690 OR7E84P olfactory receptor family 7 subfamily E member 84 pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 OST185 OR7E54P olfactory receptor, family 7, subfamily E, member 84 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 390288 NG_002276 PGOHUM00000259930 OR7E84P +HGNC:14692 OR7E85P olfactory receptor family 7 subfamily E member 85 pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 OR7E88P olfactory receptor, family 7, subfamily E, member 85 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 442105 ENSG00000250884 OTTHUMG00000160195 AW009208 NG_002249 PGOHUM00000250756 OR7E85P +HGNC:14694 OR7E86P olfactory receptor family 7 subfamily E member 86 pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 olfactory receptor, family 7, subfamily E, member 86 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 442104 ENSG00000248364 OTTHUMG00000160198 NG_002248 PGOHUM00000258184 OR7E86P +HGNC:14709 OR7E87P olfactory receptor family 7 subfamily E member 87 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 OR11-9 "OR7E3P|OR7F3P" olfactory receptor, family 7, subfamily E, member 87 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 8586 ENSG00000184055 OTTHUMG00000057593 AP000867 NG_002164 PGOHUM00000257895 OR7E87P +HGNC:14730 OR7E89P olfactory receptor family 7 subfamily E member 89 pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 olfactory receptor, family 7, subfamily E, member 89 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 79540 ENSG00000243792 OTTHUMG00000153966 NG_002272 PGOHUM00000250477 OR7E89P +HGNC:14733 OR7E90P olfactory receptor family 7 subfamily E member 90 pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 OST705 OR7E123P olfactory receptor, family 7, subfamily E, member 90 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 79537 ENSG00000188668 OTTHUMG00000153972 NG_002271 PGOHUM00000250478 OR7E90P +HGNC:14747 OR7E91P olfactory receptor family 7 subfamily E member 91 pseudogene pseudogene pseudogene Approved 2p13.3 02p13.3 olfactory receptor, family 7, subfamily E, member 91 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 79315 ENSG00000205847 OTTHUMG00000154170 BC030991 NR_002185 PGOHUM00000250458 OR7E91P +HGNC:14780 OR7E93P olfactory receptor family 7 subfamily E member 93 pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 OR7E131P olfactory receptor, family 7, subfamily E, member 93 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 79282 ENSG00000228963 OTTHUMG00000159574 NG_002225 OR7E93P +HGNC:14789 OR7E94P olfactory receptor family 7 subfamily E member 94 pseudogene pseudogene pseudogene Approved 4q21.21 04q21.21 olfactory receptor, family 7, subfamily E, member 94 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 79273 ENSG00000249646 OTTHUMG00000160914 AC013662 NG_002221 PGOHUM00000245607 OR7E94P +HGNC:14815 OR7E96P olfactory receptor family 7 subfamily E member 96 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 olfactory receptor, family 7, subfamily E, member 96 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 401450 ENSG00000227013 OTTHUMG00000165410 AC025126 NG_004629 PGOHUM00000258369 OR7E96P +HGNC:14834 OR7E97P olfactory receptor family 7 subfamily E member 97 pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 olfactory receptor, family 7, subfamily E, member 97 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 79492 ENSG00000179170 OTTHUMG00000159566 NG_002256 OR7E97P +HGNC:15059 OR7E99P olfactory receptor family 7 subfamily E member 99 pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 olfactory receptor, family 7, subfamily E, member 99 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81419 ENSG00000250710 OTTHUMG00000159868 NG_004262 PGOHUM00000259889 OR7E99P +HGNC:15048 OR7E100P olfactory receptor family 7 subfamily E member 100 pseudogene pseudogene pseudogene Approved 3q13.2 03q13.2 olfactory receptor, family 7, subfamily E, member 100 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81430 ENSG00000242525 OTTHUMG00000159249 AC024709 NG_004266 PGOHUM00000237722 OR7E100P +HGNC:15342 OR7E101P olfactory receptor family 7 subfamily E member 101 pseudogene pseudogene pseudogene Approved 13q14.13 13q14.13 olfactory receptor, family 7, subfamily E, member 101 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81138 ENSG00000227019 OTTHUMG00000016871 AL157365 NG_004175 PGOHUM00000248585 OR7E101P +HGNC:15043 OR7E102P olfactory receptor family 7 subfamily E member 102 pseudogene pseudogene pseudogene Approved 2q11.1 02q11.1 OR7E102 olfactory receptor, family 7, subfamily E, member 102 pseudogene Olfactory receptors, family 7 154 2001-03-28 2004-03-10 2015-12-09 2015-12-09 400984 ENSG00000168992 OTTHUMG00000155151 AC009237 NG_004385 PGOHUM00000240793 OR7E102P +HGNC:15343 OR7E104P olfactory receptor family 7 subfamily E member 104 pseudogene pseudogene pseudogene Approved 13q21.31 13q21.31 olfactory receptor, family 7, subfamily E, member 104 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81137 ENSG00000278380 OTTHUMG00000017026 AI799130 NG_004174 PGOHUM00000291976 OR7E104P +HGNC:15364 OR7E105P olfactory receptor family 7 subfamily E member 105 pseudogene pseudogene pseudogene Approved 14q22.1 14q22.1 olfactory receptor, family 7, subfamily E, member 105 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81116 ENSG00000258423 OTTHUMG00000171078 NG_004171 PGOHUM00000250145 OR7E105P +HGNC:15365 OR7E106P olfactory receptor family 7 subfamily E member 106 pseudogene pseudogene pseudogene Approved 14q22.1 14q22.1 OST215 OR7E40P olfactory receptor, family 7, subfamily E, member 106 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81115 ENSG00000258550 OTTHUMG00000171079 NG_004170 PGOHUM00000247800 OR7E106P +HGNC:15117 OR7E108P olfactory receptor family 7 subfamily E member 108 pseudogene pseudogene pseudogene Approved 9q22.2 09q22.2 OST726 olfactory receptor, family 7, subfamily E, member 108 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81363 ENSG00000270432 OTTHUMG00000184640 AL354862 NG_004254 PGOHUM00000250505 OR7E108P +HGNC:15118 OR7E109P olfactory receptor family 7 subfamily E member 109 pseudogene pseudogene pseudogene Approved 9q22.2 09q22.2 OST721 olfactory receptor, family 7, subfamily E, member 109 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 401540 ENSG00000236316 OTTHUMG00000020198 NG_004386 PGOHUM00000236255 OR7E109P +HGNC:15126 OR7E110P olfactory receptor family 7 subfamily E member 110 pseudogene pseudogene pseudogene Approved 10p13 10p13 "hg674|OR912-109|OR912-46|OR912-108|OR912-110|hg523" "OR7E68P|OR7E71P|OR7E72P|OR7E73P|OR7E74P|OR7E75P" olfactory receptor, family 7, subfamily E, member 110 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81354 ENSG00000235623 OTTHUMG00000017715 NG_004251 PGOHUM00000258459 OR7E110P +HGNC:15344 OR7E111P olfactory receptor family 7 subfamily E member 111 pseudogene pseudogene pseudogene Approved 13q21.32 13q21.32 olfactory receptor, family 7, subfamily E, member 111 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81136 ENSG00000231667 OTTHUMG00000017042 AC023058 NG_004173 PGOHUM00000248621 OR7E111P +HGNC:15119 OR7E112P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15120 OR7E113P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15121 OR7E114P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15127 OR7E115P olfactory receptor family 7 subfamily E member 115 pseudogene pseudogene pseudogene Approved 10p13 10p13 OST704 olfactory receptor, family 7, subfamily E, member 115 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81353 ENSG00000182531 OTTHUMG00000017719 AL157391 NG_004692 PGOHUM00000238361 OR7E115P +HGNC:15122 OR7E116P olfactory receptor family 7 subfamily E member 116 pseudogene pseudogene pseudogene Approved 9q22.2 09q22.2 OST733 olfactory receptor, family 7, subfamily E, member 116 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81358 ENSG00000225072 OTTHUMG00000020193 NG_004253 PGOHUM00000236693 OR7E116P +HGNC:15303 OR7E117P olfactory receptor family 7 subfamily E member 117 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OST716 olfactory receptor, family 7, subfamily E, member 117 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 399857 ENSG00000238161 OTTHUMG00000011847 AC060812 NG_004384 PGOHUM00000250354 OR7E117P +HGNC:15092 OR7E118P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15049 OR7E121P olfactory receptor family 7 subfamily E member 121 pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 olfactory receptor, family 7, subfamily E, member 121 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 402133 ENSG00000244222 OTTHUMG00000158852 AC067827 NG_004395 PGOHUM00000250247 OR7E121P +HGNC:15050 OR7E122P olfactory receptor family 7 subfamily E member 122 pseudogene pseudogene pseudogene Approved 3p25.3 03p25.3 OST719 olfactory receptor, family 7, subfamily E, member 122 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81428 ENSG00000215160 OTTHUMG00000155006 AC034187 NG_004265 PGOHUM00000250276 OR7E122P +HGNC:15441 OR7E124P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15098 OR7E125P olfactory receptor family 7 subfamily E member 125 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 PJCG6 olfactory receptor, family 7, subfamily E, member 125 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 389616 ENSG00000177306 OTTHUMG00000150380 AF228730 NG_004256 PGOHUM00000258311 OR7E125P +HGNC:15304 OR7E126P olfactory receptor family 7 subfamily E member 126 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 "hg500|OR11-1" olfactory receptor, family 7, subfamily E, member 126 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81176 ENSG00000254593 OTTHUMG00000167538 AI085560 NG_002280 PGOHUM00000250410 OR7E126P +HGNC:15305 OR7E128P olfactory receptor family 7 subfamily E member 128 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 olfactory receptor, family 7, subfamily E, member 128 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81175 ENSG00000228915 OTTHUMG00000167537 AP000719 NG_004186 PGOHUM00000257899 OR7E128P +HGNC:15052 OR7E129P olfactory receptor family 7 subfamily E member 129 pseudogene pseudogene pseudogene Approved 3q22.1 03q22.1 olfactory receptor, family 7, subfamily E, member 129 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 391576 ENSG00000180770 OTTHUMG00000159715 NG_004264 PGOHUM00000250255 OR7E129P +HGNC:15053 OR7E130P olfactory receptor family 7 subfamily E member 130 pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 OST702 olfactory receptor, family 7, subfamily E, member 130 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 389144 ENSG00000234458 OTTHUMG00000159572 NG_004314 OR7E130P +HGNC:19555 OR7E135P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:19557 OR7E136P olfactory receptor family 7 subfamily E member 136 pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 "OR7E147P|OR7E139P" olfactory receptor, family 7, subfamily E, member 136 pseudogene Olfactory receptors, family 7 154 2002-11-04 2015-12-09 2015-12-09 155340 ENSG00000205897 OTTHUMG00000158488 NG_004291 PGOHUM00000250851 OR7E136P +HGNC:19561 OR7E140P olfactory receptor family 7 subfamily E member 140 pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 olfactory receptor, family 7, subfamily E, member 140 pseudogene Olfactory receptors, family 7 154 2002-11-04 2015-12-09 2015-12-09 344729 ENSG00000238152 OTTHUMG00000168669 NG_004309 OR7E140P +HGNC:19643 OR7E141P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:19644 OR7E142P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:19586 OR7E143P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:19618 OR7E145P olfactory receptor family 7 subfamily E member 145 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 olfactory receptor, family 7, subfamily E, member 145 pseudogene Olfactory receptors, family 7 154 2002-11-04 2015-12-09 2015-12-09 390215 ENSG00000235855 OTTHUMG00000167245 NG_004336 PGOHUM00000250380 OR7E145P +HGNC:19642 OR7E148P olfactory receptor family 7 subfamily E member 148 pseudogene pseudogene pseudogene Approved 12p13 12p13 OR7E150P olfactory receptor, family 7, subfamily E, member 148 pseudogene Olfactory receptors, family 7 154 2002-11-04 2015-12-09 2015-12-09 282801 ENSG00000214487 OTTHUMG00000168670 NG_004303 PGOHUM00000239322 OR7E148P +HGNC:19589 OR7E149P olfactory receptor family 7 subfamily E member 149 pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 olfactory receptor, family 7, subfamily E, member 149 pseudogene Olfactory receptors, family 7 154 2002-11-04 2015-12-09 2015-12-09 282756 ENSG00000177586 OTTHUMG00000168671 NG_004297 OR7E149P +HGNC:31309 OR7E154P olfactory receptor family 7 subfamily E member 154 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 olfactory receptor, family 7, subfamily E, member 154 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 403296 ENSG00000254715 OTTHUMG00000165389 NG_004634 PGOHUM00000258321 OR7E154P +HGNC:31310 OR7E155P olfactory receptor family 7 subfamily E member 155 pseudogene pseudogene pseudogene Approved 13q14.11 13q14.11 olfactory receptor, family 7, subfamily E, member 155 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 403297 ENSG00000234655 OTTHUMG00000016792 NG_004435 PGOHUM00000249943 OR7E155P +HGNC:31311 OR7E156P olfactory receptor family 7 subfamily E member 156 pseudogene pseudogene pseudogene Approved 13q21.31 13q21.31 olfactory receptor, family 7, subfamily E, member 156 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 283491 ENSG00000274052 OTTHUMG00000017021 NR_002171 PGOHUM00000292177 OR7E156P +HGNC:31231 OR7E157P olfactory receptor family 7 subfamily E member 157 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 olfactory receptor, family 7, subfamily E, member 157 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 403219 ENSG00000233176 OTTHUMG00000150579 NG_004633 PGOHUM00000258357 OR7E157P +HGNC:31232 OR7E158P olfactory receptor family 7 subfamily E member 158 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 olfactory receptor, family 7, subfamily E, member 158 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 392194 ENSG00000254948 OTTHUMG00000165308 NG_004376 PGOHUM00000249229 OR7E158P +HGNC:31312 OR7E159P olfactory receptor family 7 subfamily E member 159 pseudogene pseudogene pseudogene Approved 14q22.1 14q22.1 olfactory receptor, family 7, subfamily E, member 159 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 403299 ENSG00000258849 OTTHUMG00000171081 NG_004436 PGOHUM00000250105 OR7E159P +HGNC:31233 OR7E160P olfactory receptor family 7 subfamily E member 160 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 olfactory receptor, family 7, subfamily E, member 160 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 402333 ENSG00000254817 OTTHUMG00000165315 NG_004399 OR7E160P +HGNC:31234 OR7E161P olfactory receptor family 7 subfamily E member 161 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 olfactory receptor, family 7, subfamily E, member 161 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 389626 ENSG00000206014 OTTHUMG00000165472 NG_004315 PGOHUM00000250001 OR7E161P +HGNC:28374 OR7E162P olfactory receptor family 7 subfamily E member 162 pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 olfactory receptor, family 7, subfamily E, member 162 pseudogene Olfactory receptors, family 7 154 2005-03-07 2015-12-09 2015-12-09 442101 ENSG00000234386 OTTHUMG00000160265 NG_004863 PGOHUM00000245433 OR7E162P +HGNC:45040 OR7E163P olfactory receptor family 7 subfamily E member 163 pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 olfactory receptor, family 7, subfamily E, member 163, pseudogene Olfactory receptors, family 7 154 2013-01-24 2015-12-09 2016-10-05 100131415 ENSG00000251166 OTTHUMG00000160266 PGOHUM00000258166 +HGNC:8465 OR7G1 olfactory receptor family 7 subfamily G member 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 OR19-15 OR7G1P olfactory receptor, family 7, subfamily G, member 1 Olfactory receptors, family 7 154 1999-12-07 2015-12-09 2016-04-25 125962 ENSG00000161807 OTTHUMG00000168067 uc021uoi.1 NM_001005192 CCDS32898 Q8NGA0 MGI:3030688 OR7G1 OR7G1 +HGNC:8466 OR7G2 olfactory receptor family 7 subfamily G member 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 OST260 olfactory receptor, family 7, subfamily G, member 2 Olfactory receptors, family 7 154 1999-12-07 2015-12-09 2015-12-09 390882 ENSG00000170923 OTTHUMG00000179931 uc010xkk.2 NM_001005193 CCDS32897 Q8NG99 MGI:3030687 OR7G2 OR7G2 +HGNC:8467 OR7G3 olfactory receptor family 7 subfamily G member 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 OST085 olfactory receptor, family 7, subfamily G, member 3 Olfactory receptors, family 7 154 1999-12-07 2015-12-09 2015-12-09 390883 ENSG00000170920 OTTHUMG00000165520 uc010xkl.2 NM_001001958 CCDS32899 Q8NG95 "MGI:3030666|MGI:3030668" RGD:1333031 OR7G3 OR7G3 +HGNC:31313 OR7G15P olfactory receptor family 7 subfamily G member 15 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 olfactory receptor, family 7, subfamily G, member 15 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2016-07-26 403300 ENSG00000275787 OTTHUMG00000187962 NG_004437 PGOHUM00000294864 OR7G15P +HGNC:8468 OR7H1P olfactory receptor family 7 subfamily H member 1 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 OR7H1 olfactory receptor, family 7, subfamily H, member 1 pseudogene Olfactory receptors, family 7 154 1999-12-07 2015-12-09 2016-07-26 390886 ENSG00000226480 OTTHUMG00000154386 AF399427 NG_002205 PGOHUM00000294868 OR7H1P +HGNC:31314 OR7H2P olfactory receptor family 7 subfamily H member 2 pseudogene pseudogene pseudogene Approved 5q21.1 05q21.1 olfactory receptor, family 7, subfamily H, member 2 pseudogene Olfactory receptors, family 7 154 2004-02-26 2015-12-09 2015-12-09 403301 ENSG00000251261 OTTHUMG00000162751 NG_004438 PGOHUM00000235343 OR7H2P +HGNC:15366 OR7K1P olfactory receptor family 7 subfamily K member 1 pseudogene pseudogene pseudogene Approved 14q12 14q12 olfactory receptor, family 7, subfamily K, member 1 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2015-12-09 81114 ENSG00000258275 OTTHUMG00000170313 AL132827 NG_004167 PGOHUM00000248113 OR7K1P +HGNC:14827 OR7L1P olfactory receptor family 7 subfamily L member 1 pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 olfactory receptor, family 7, subfamily L, member 1 pseudogene Olfactory receptors, family 7 154 2001-02-28 2015-12-09 2015-12-09 79499 ENSG00000232787 OTTHUMG00000022413 NG_002258 PGOHUM00000242015 OR7L1P +HGNC:15128 OR7M1P olfactory receptor family 7 subfamily M member 1 pseudogene pseudogene pseudogene Approved 10q26.3 10q26.3 olfactory receptor, family 7, subfamily M, member 1 pseudogene Olfactory receptors, family 7 154 2001-03-28 2015-12-09 2016-08-17 81352 ENSG00000273336 OTTHUMG00000185917 NG_004250 PGOHUM00000290322 OR7M1P +HGNC:8469 OR8A1 olfactory receptor family 8 subfamily A member 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 OST025 olfactory receptor, family 8, subfamily A, member 1 Olfactory receptors, family 8 155 1999-12-07 2015-12-09 2015-12-09 390275 ENSG00000196119 OTTHUMG00000165923 uc010san.3 BK004495 NM_001005194 CCDS31712 Q8NGG7 "MGI:1931271|MGI:2661338" RGD:1334242 OR8A1 OR8A1 +HGNC:15306 OR8A2P olfactory receptor family 8 subfamily A member 2 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily A, member 2 pseudogene Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2015-12-09 390273 ENSG00000255510 OTTHUMG00000165918 NG_004341 PGOHUM00000242922 OR8A2P +HGNC:31315 OR8A3P olfactory receptor family 8 subfamily A member 3 pseudogene pseudogene pseudogene Approved 11q 11q olfactory receptor, family 8, subfamily A, member 3 pseudogene Olfactory receptors, family 8 155 2004-02-26 2015-12-09 2015-12-09 403302 ENSG00000255315 OTTHUMG00000165920 NG_004439 OR8A3P +HGNC:8470 OR8B1P olfactory receptor family 8 subfamily B member 1 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 OR11-561 OR8B11P olfactory receptor, family 8, subfamily B, member 1 pseudogene Olfactory receptors, family 8 155 1998-11-09 2015-12-09 2015-12-09 8582 ENSG00000227737 OTTHUMG00000154392 AF065875 NG_002156 9787077 PGOHUM00000242525 OR8B1P +HGNC:8471 OR8B2 olfactory receptor family 8 subfamily B member 2 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily B, member 2 Olfactory receptors, family 8 155 1999-12-07 2015-12-09 2016-10-05 26595 ENSG00000204293 OTTHUMG00000165982 uc010sai.3 AB065826 NM_001005468 CCDS31708 Q96RD0 MGI:2660712 RGD:1334039 OR8B2 OR8B2 +HGNC:8472 OR8B3 olfactory receptor family 8 subfamily B member 3 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily B, member 3 Olfactory receptors, family 8 155 1999-12-07 2015-12-09 2016-10-05 390271 ENSG00000196661 OTTHUMG00000165983 uc010saj.3 AB065827 NM_001005467 CCDS31709 Q8NGG8 MGI:2660712 OR8B3 OR8B3 +HGNC:8473 OR8B4 olfactory receptor family 8 subfamily B member 4 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q24.2 11q24.2 OR8B4P olfactory receptor, family 8, subfamily B, member 4 (gene/pseudogene) Olfactory receptors, family 8 155 1999-12-07 2001-06-29 2015-12-09 2016-10-11 283162 ENSG00000280090 OTTHUMG00000165916 uc010sak.2 AB065831 NM_001005196 CCDS31710 Q96RC9 MGI:3030712 RGD:1333142 OR8B4 OR8B4 +HGNC:8474 OR8B5P olfactory receptor family 8 subfamily B member 5 pseudogene pseudogene pseudogene Approved 11q25 11q25 olfactory receptor, family 8, subfamily B, member 5 pseudogene Olfactory receptors, family 8 155 1999-12-07 2015-12-09 2015-12-09 26592 ENSG00000255030 OTTHUMG00000165981 NG_002204 OR8B5P +HGNC:8475 OR8B6P olfactory receptor family 8 subfamily B member 6 pseudogene pseudogene pseudogene Approved 11q25 11q25 olfactory receptor, family 8, subfamily B, member 6 pseudogene Olfactory receptors, family 8 155 1999-12-07 2015-12-09 2015-12-09 26591 ENSG00000255225 OTTHUMG00000165980 NG_002203 OR8B6P +HGNC:8476 OR8B7P olfactory receptor family 8 subfamily B member 7 pseudogene pseudogene pseudogene Approved 11q25 11q25 OR8B13P olfactory receptor, family 8, subfamily B, member 7 pseudogene Olfactory receptors, family 8 155 1999-12-07 2015-12-09 2015-12-09 26590 ENSG00000254976 OTTHUMG00000165979 NG_002202 OR8B7P +HGNC:8477 OR8B8 olfactory receptor family 8 subfamily B member 8 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 TPCR85 olfactory receptor, family 8, subfamily B, member 8 Olfactory receptors, family 8 155 1999-11-29 2015-12-09 2015-12-09 26493 ENSG00000197125 OTTHUMG00000165917 uc010sal.3 AF238488 NM_012378 CCDS8446 Q15620 9119360 MGI:2177528 RGD:1334188 OR8B8 OR8B8 +HGNC:14746 OR8B9P olfactory receptor family 8 subfamily B member 9 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily B, member 9 pseudogene Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2015-12-09 79316 ENSG00000229386 OTTHUMG00000154393 AF179765 NG_002322 PGOHUM00000242528 OR8B9P +HGNC:14751 OR8B10P olfactory receptor family 8 subfamily B member 10 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily B, member 10 pseudogene Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2015-12-09 390274 ENSG00000254646 OTTHUMG00000165919 NG_004342 PGOHUM00000242529 OR8B10P +HGNC:15307 OR8B12 olfactory receptor family 8 subfamily B member 12 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily B, member 12 Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2015-12-09 219858 ENSG00000170953 OTTHUMG00000165922 uc010sam.3 NM_001005195 CCDS31711 Q8NGG6 "MGI:3030708|MGI:3030709|MGI:3030710" RGD:1334306 OR8B12 OR8B12 +HGNC:8478 OR8C1P olfactory receptor family 8 subfamily C member 1 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 "OR11-175|OR912-45|OR912-106" "OR8C3P|OR8C4P" olfactory receptor, family 8, subfamily C, member 1 pseudogene Olfactory receptors, family 8 155 1998-11-09 2015-12-09 2015-12-09 8580 ENSG00000229254 OTTHUMG00000154390 AF065872 NG_002154 9787077 PGOHUM00000242526 OR8C1P +HGNC:8481 OR8D1 olfactory receptor family 8 subfamily D member 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 OST004 OR8D3 olfactory receptor, family 8, subfamily D, member 1 Olfactory receptors, family 8 155 1999-12-01 2015-12-09 2016-10-05 283159 ENSG00000196341 OTTHUMG00000165977 uc010sag.3 AF238489 NM_001002917 CCDS31706 Q8WZ84 "MGI:109309|MGI:3030767" RGD:6500186 OR8D1 OR8D1 +HGNC:8482 OR8D2 olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily D, member 2 (gene/pseudogene) Olfactory receptors, family 8 155 1999-12-01 2015-12-09 2016-10-11 283160 ENSG00000279116 OTTHUMG00000165978 uc010sah.2 AF162668 NM_001002918 Q9GZM6 "MGI:3030758|MGI:3030760" OR8D2 OR8D2 +HGNC:14840 OR8D4 olfactory receptor family 8 subfamily D member 4 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 olfactory receptor, family 8, subfamily D, member 4 Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2015-12-09 338662 ENSG00000181518 OTTHUMG00000165960 uc010saa.3 AB065761 NM_001005197 CCDS31698 Q8NGM9 MGI:3030819 RGD:1333740 OR8D4 OR8D4 +HGNC:14691 OR8F1P olfactory receptor family 8 subfamily F member 1 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily F, member 1 pseudogene Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2015-12-09 390269 ENSG00000239426 OTTHUMG00000154391 NG_004340 PGOHUM00000257926 OR8F1P +HGNC:8484 OR8G1 olfactory receptor family 8 subfamily G member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "TPCR25|HSTPCR25" OR8G1P "olfactory receptor, family 8, subfamily G, member 1 pseudogene|olfactory receptor, family 8, subfamily G, member 1 (gene/pseudogene)" Olfactory receptors, family 8 155 1999-11-29 2005-05-16 2015-12-09 2015-12-09 26494 ENSG00000197849 OTTHUMG00000189223 uc031yin.1 AB065946 NM_001002905 CCDS73407 Q15617 9119360 MGI:3030801 PGOHUM00000257928 OR8G1 +HGNC:8485 OR8G2 olfactory receptor family 8 subfamily G member 2 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "TPCR120|HSTPCR120|ORL206|ORL486" "OR8G2P|OR8G4" "olfactory receptor, family 8, subfamily G, member 2 pseudogene|olfactory receptor, family 8, subfamily G, member 2" Olfactory receptors, family 8 155 1999-11-29 2004-04-02 2015-12-09 2015-12-09 26492 X89669 NM_001007249 Q6IF36 9119360 MGI:3030063 OR8G2P +HGNC:14698 OR8G3P olfactory receptor family 8 subfamily G member 3 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily G, member 3 pseudogene Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2015-12-09 387815 ENSG00000255425 OTTHUMG00000165972 NG_004312 P0DMU2 PGOHUM00000250421 OR8G3P +HGNC:19622 OR8G5 olfactory receptor family 8 subfamily G member 5 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "OR8G5P|OR8G6" olfactory receptor, family 8, subfamily G, member 5 Olfactory receptors, family 8 155 2002-11-04 2004-03-10 2015-12-09 2016-10-05 219865 ENSG00000255298 OTTHUMG00000186059 uc031yio.1 BK004516 NM_001005198 CCDS66256 Q8NG78 MGI:3030769 RGD:6500725 PGOHUM00000257929 OR8G5 +HGNC:19625 OR8G7P olfactory receptor family 8 subfamily G member 7 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily G, member 7 pseudogene Olfactory receptors, family 8 155 2002-11-04 2015-12-09 2016-10-05 282786 ENSG00000276316 OTTHUMG00000165974 NG_004628 PGOHUM00000291162 OR8G7P +HGNC:14824 OR8H1 olfactory receptor family 8 subfamily H member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily H, member 1 Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2016-10-05 219469 ENSG00000181693 OTTHUMG00000162671 uc010rje.3 AB065836 NM_001005199 CCDS31526 Q8NGG4 MGI:3030933 OR8H1 OR8H1 +HGNC:15308 OR8H2 olfactory receptor family 8 subfamily H member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily H, member 2 Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2016-10-05 390151 ENSG00000181767 OTTHUMG00000166832 uc010riy.2 AB065657 NM_001005200 CCDS31518 Q8N162 MGI:3030934 OR8H2 OR8H2 +HGNC:15309 OR8H3 olfactory receptor family 8 subfamily H member 3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily H, member 3 Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2016-10-05 390152 ENSG00000181761 OTTHUMG00000166833 uc001nii.1 AB065840 NM_001005201 CCDS31519 Q8N146 RGD:1333246 OR8H3 OR8H3 +HGNC:14828 OR8I1P olfactory receptor family 8 subfamily I member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily I, member 1 pseudogene Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2015-12-09 79498 ENSG00000255461 OTTHUMG00000166854 NG_004147 PGOHUM00000242272 OR8I1P +HGNC:15310 OR8I2 olfactory receptor family 8 subfamily I member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily I, member 2 Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2016-10-05 120586 ENSG00000172154 OTTHUMG00000166831 uc010rix.2 AB065656 NM_001003750 CCDS31517 Q8N0Y5 MGI:3030938 RGD:1334050 OR8I2 OR8I2 +HGNC:31316 OR8I4P olfactory receptor family 8 subfamily I member 4 pseudogene pseudogene pseudogene Approved 11q 11q olfactory receptor, family 8, subfamily I, member 4 pseudogene Olfactory receptors, family 8 155 2004-02-26 2015-12-09 2015-12-09 403303 ENSG00000254524 OTTHUMG00000166839 NG_004635 OR8I4P +HGNC:14855 OR8J1 olfactory receptor family 8 subfamily J member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily J, member 1 Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2016-10-05 219477 ENSG00000172487 OTTHUMG00000166859 uc010rjh.2 AB065748 NM_001005205 CCDS31529 Q8NGP2 OR8J1 OR8J1 +HGNC:15311 OR8J2 olfactory receptor family 8 subfamily J member 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR8J2P "olfactory receptor, family 8, subfamily J, member 2 pseudogene|olfactory receptor, family 8, subfamily J, member 2 (gene/pseudogene)" Olfactory receptors, family 8 155 2001-03-28 2008-06-11 2015-12-09 2015-12-09 81169 ENSG00000254658 OTTHUMG00000166850 uc058bjz.1 NG_004185 Q8NGG1 18989455 PGOHUM00000242271 OR8J2P +HGNC:15312 OR8J3 olfactory receptor family 8 subfamily J member 3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily J, member 3 Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2016-10-05 81168 ENSG00000167822 OTTHUMG00000166834 uc010riz.2 NM_001004064 CCDS31520 Q8NGG0 "MGI:3030879|MGI:3030891|MGI:3030896" RGD:1333455 OR8J3 OR8J3 +HGNC:14831 OR8K1 olfactory receptor family 8 subfamily K member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily K, member 1 Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2016-10-05 390157 ENSG00000150261 OTTHUMG00000166858 uc010rjg.2 AB065835 NM_001002907 CCDS31528 Q8NGG5 MGI:3030880 RGD:1333365 OR8K1 OR8K1 +HGNC:14832 OR8K2P olfactory receptor family 8 subfamily K member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily K, member 2 pseudogene Olfactory receptors, family 8 155 2001-02-28 2015-12-09 2015-12-09 79494 ENSG00000255134 OTTHUMG00000166857 NG_004146 PGOHUM00000242724 OR8K2P +HGNC:15313 OR8K3 olfactory receptor family 8 subfamily K member 3 (gene/pseudogene) protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily K, member 3 (gene/pseudogene) Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2016-10-11 219473 ENSG00000280314 OTTHUMG00000166855 uc010rjf.2 AB065541 NM_001005202 Q8NH51 MGI:3030888 RGD:1332674 OR8K3 OR8K3 +HGNC:15314 OR8K4P olfactory receptor family 8 subfamily K member 4 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily K, member 4 pseudogene Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2015-12-09 81166 ENSG00000254947 OTTHUMG00000166842 NG_004184 PGOHUM00000242268 OR8K4P +HGNC:15315 OR8K5 olfactory receptor family 8 subfamily K member 5 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily K, member 5 Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2016-10-05 219453 ENSG00000181752 OTTHUMG00000166820 uc010rja.2 BK004347 NM_001004058 CCDS31521 Q8NH50 MGI:3030887 RGD:6501552 OR8K5 OR8K5 +HGNC:15316 OR8L1P olfactory receptor family 8 subfamily L member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily L, member 1 pseudogene Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2015-12-09 81164 ENSG00000254903 OTTHUMG00000166871 NG_004183 PGOHUM00000242726 OR8L1P +HGNC:15060 OR8N1P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15317 OR8Q1P olfactory receptor family 8 subfamily Q member 1 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily Q, member 1 pseudogene Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2015-12-09 81163 ENSG00000255341 OTTHUMG00000165924 NG_004182 PGOHUM00000242924 OR8Q1P +HGNC:15318 OR8R1P olfactory receptor family 8 subfamily R member 1 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 olfactory receptor, family 8, subfamily R, member 1 pseudogene Olfactory receptors, family 8 155 2001-03-28 2015-12-09 2015-12-09 81162 ENSG00000256347 OTTHUMG00000167968 AP002351 NG_004181 PGOHUM00000242796 OR8R1P +HGNC:19628 OR8S1 olfactory receptor family 8 subfamily S member 1 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 8, subfamily S, member 1 Olfactory receptors, family 8 155 2002-11-04 2015-12-09 2015-12-09 341568 ENSG00000197376 OTTHUMG00000170021 uc010slu.2 NM_001005203 CCDS31789 Q8NH09 OR8S1 OR8S1 +HGNC:31317 OR8S21P olfactory receptor family 8 subfamily S member 21 pseudogene pseudogene pseudogene Approved 12q13.11 12q13.11 olfactory receptor, family 8, subfamily S, member 21 pseudogene Olfactory receptors, family 8 155 2004-02-26 2015-12-09 2015-12-09 403304 ENSG00000273434 OTTHUMG00000185952 NG_005823 +HGNC:19630 OR8T1P olfactory receptor family 8 subfamily T member 1 pseudogene pseudogene pseudogene Approved 12q13.11 12q13.11 olfactory receptor, family 8, subfamily T, member 1 pseudogene Olfactory receptors, family 8 155 2002-11-04 2015-12-09 2016-10-05 282791 ENSG00000226413 OTTHUMG00000154311 NG_004301 PGOHUM00000239445 OR8T1P +HGNC:19611 OR8U1 olfactory receptor family 8 subfamily U member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily U, member 1 Olfactory receptors, family 8 155 2002-11-04 2015-12-09 2016-10-05 219417 ENSG00000172199 OTTHUMG00000166860 uc031xpd.1 AB065603 NM_001005204 CCDS41647 Q8NH10 MGI:3030878 RGD:1333859 OR8U1 OR8U1 +HGNC:27538 OR8U8 olfactory receptor family 8 subfamily U member 8 protein-coding gene gene with protein product Approved 11q1 alternate reference locus 11q1 alternate reference locus olfactory receptor, family 8, subfamily U, member 8 Olfactory receptors, family 8 155 2005-03-15 2015-12-09 2015-12-09 504189 uc058jjg.1 JH159136 NM_001013356 P0C7N1 OR8U8 +HGNC:29166 OR8U9 olfactory receptor family 8 subfamily U member 9 protein-coding gene gene with protein product Approved 11q1 alternate reference locus 11q1 alternate reference locus olfactory receptor, family 8, subfamily U, member 9 Olfactory receptors, family 8 155 2005-03-15 2015-12-09 2015-12-09 504190 JH159136 NM_001013357 P0C7N5 OR8U9 +HGNC:19613 OR8V1P olfactory receptor family 8 subfamily V member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 8, subfamily V, member 1 pseudogene Olfactory receptors, family 8 155 2002-11-04 2015-12-09 2016-10-05 282776 ENSG00000230213 OTTHUMG00000154220 NG_004299 PGOHUM00000242269 OR8V1P +HGNC:31318 OR8X1P olfactory receptor family 8 subfamily X member 1 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 8, subfamily X, member 1 pseudogene Olfactory receptors, family 8 155 2004-02-26 2015-12-09 2015-12-09 403305 ENSG00000255048 OTTHUMG00000165984 NG_004440 PGOHUM00000242527 OR8X1P +HGNC:8486 OR9A1P olfactory receptor family 9 subfamily A member 1 pseudogene pseudogene pseudogene Approved 7q34 07q34 "HTPCRX06|HSHTPCRX06" OR9A1 olfactory receptor, family 9, subfamily A, member 1 pseudogene Olfactory receptors, family 9 156 1999-11-29 2015-12-09 2015-12-09 26495 ENSG00000237621 OTTHUMG00000158540 X64982 NG_002195 Q8NGU1 1370859 PGOHUM00000233601 OR9A1P +HGNC:15093 OR9A2 olfactory receptor family 9 subfamily A member 2 protein-coding gene gene with protein product Approved 7q34 07q34 olfactory receptor, family 9, subfamily A, member 2 Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 135924 ENSG00000179468 OTTHUMG00000158386 uc003wcc.2 NM_001001658 CCDS34767 Q8NGT5 MGI:3030293 RGD:1562066 OR9A2 OR9A2 +HGNC:15094 OR9A3P olfactory receptor family 9 subfamily A member 3 pseudogene pseudogene pseudogene Approved 7q34 07q34 OR9A6P olfactory receptor, family 9, subfamily A, member 3 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 392106 ENSG00000240031 OTTHUMG00000158371 NG_004372 PGOHUM00000233600 OR9A3P +HGNC:15095 OR9A4 olfactory receptor family 9 subfamily A member 4 protein-coding gene gene with protein product Approved 7q34 07q34 olfactory receptor, family 9, subfamily A, member 4 Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 130075 ENSG00000258083 OTTHUMG00000158370 uc003vwu.2 NM_001001656 CCDS43661 Q8NGU2 MGI:3030294 RGD:1332737 OR9A4 OR9A4 +HGNC:19563 OR9A5P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15319 OR9G1 olfactory receptor family 9 subfamily G member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR9G5 olfactory receptor, family 9, subfamily G, member 1 Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2016-10-05 390174 ENSG00000174914 OTTHUMG00000167112 uc010rjn.2 AB065500 NM_001005213 CCDS31536 Q8NH87 MGI:3030848 RGD:1332820 OR9G1 OR9G1 +HGNC:15320 OR9G2P olfactory receptor family 9 subfamily G member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OR9G6 olfactory receptor, family 9, subfamily G, member 2 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 81160 ENSG00000254825 OTTHUMG00000166933 NG_004180 PGOHUM00000242284 OR9G2P +HGNC:15321 OR9G3P olfactory receptor family 9 subfamily G member 3 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 9, subfamily G, member 3 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 81159 ENSG00000181325 OTTHUMG00000166931 NG_004179 PGOHUM00000242733 OR9G3P +HGNC:15322 OR9G4 olfactory receptor family 9 subfamily G member 4 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 9, subfamily G, member 4 Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2016-10-05 283189 ENSG00000172457 OTTHUMG00000166932 uc010rjo.3 BK004400 NM_001005284 CCDS31537 Q8NGQ1 "MGI:3030840|MGI:3030849" RGD:1334313 OR9G4 OR9G4 +HGNC:31940 OR9G9 olfactory receptor family 9 subfamily G member 9 protein-coding gene gene with protein product Approved 11q11 alternate reference locus 11q11 alternate reference locus olfactory receptor, family 9, subfamily G, member 9 Olfactory receptors, family 9 156 2005-03-15 2015-12-09 2015-12-09 504191 uc031ykq.1 JH159137 NM_001013358 P0C7N8 OR9G9 +HGNC:15038 OR9H1P olfactory receptor family 9 subfamily H member 1 pseudogene pseudogene pseudogene Approved 1q44 01q44 olfactory receptor, family 9, subfamily H, member 1 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 81439 ENSG00000228336 OTTHUMG00000040209 NG_004269 PGOHUM00000245300 OR9H1P +HGNC:14718 OR9I1 olfactory receptor family 9 subfamily I member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 9, subfamily I, member 1 Olfactory receptors, family 9 156 2001-02-28 2015-12-09 2015-12-09 219954 ENSG00000172377 OTTHUMG00000167404 uc001nml.1 AB065733 NM_001005211 CCDS31542 Q8NGQ6 "MGI:3031336|MGI:3031339" RGD:1333930 OR9I1 OR9I1 +HGNC:15324 OR9I2P olfactory receptor family 9 subfamily I member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 9, subfamily I, member 2 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 81156 ENSG00000186508 OTTHUMG00000154293 AF179762 NG_002279 PGOHUM00000242741 OR9I2P +HGNC:15325 OR9I3P olfactory receptor family 9 subfamily I member 3 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OST714 olfactory receptor, family 9, subfamily I, member 3 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 81155 ENSG00000272685 OTTHUMG00000186071 NG_004178 PGOHUM00000258566 OR9I3P +HGNC:14720 OR9J1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15338 OR9K1P olfactory receptor family 9 subfamily K member 1 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 9, subfamily K, member 1 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 121360 ENSG00000196534 OTTHUMG00000154383 NG_004285 PGOHUM00000239797 OR9K1P +HGNC:15339 OR9K2 olfactory receptor family 9 subfamily K member 2 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 olfactory receptor, family 9, subfamily K, member 2 Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 441639 ENSG00000170605 OTTHUMG00000169827 uc010spe.3 BK004326 NM_001005243 CCDS31814 Q8NGE7 "MGI:3030659|MGI:3030660" RGD:1333055 OR9K2 OR9K2 +HGNC:14761 OR9L1P olfactory receptor family 9 subfamily L member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OR9L2P olfactory receptor, family 9, subfamily L, member 1 pseudogene Olfactory receptors, family 9 156 2001-02-28 2015-12-09 2015-12-09 79301 ENSG00000255131 OTTHUMG00000167403 AC018807 NG_002233 PGOHUM00000242295 OR9L1P +HGNC:15327 OR9M1P olfactory receptor family 9 subfamily M member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 OR5BG1P "olfactory receptor, family 5, subfamily BG, member 1 pseudogene|olfactory receptor, family 9, subfamily M, member 1, pseudogene" Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2016-10-05 81153 ENSG00000186124 OTTHUMG00000154234 NG_004177 OR9M1P +HGNC:15096 OR9N1P olfactory receptor family 9 subfamily N member 1 pseudogene pseudogene pseudogene Approved 7q34 07q34 olfactory receptor, family 9, subfamily N, member 1 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 81383 ENSG00000244292 OTTHUMG00000158369 NG_004258 PGOHUM00000233602 OR9N1P +HGNC:15097 OR9P1P olfactory receptor family 9 subfamily P member 1 pseudogene pseudogene pseudogene Approved 7q34 07q34 OR9P2P olfactory receptor, family 9, subfamily P, member 1 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 81382 ENSG00000239293 OTTHUMG00000154319 NG_004257 PGOHUM00000233048 OR9P1P +HGNC:14724 OR9Q1 olfactory receptor family 9 subfamily Q member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 9, subfamily Q, member 1 Olfactory receptors, family 9 156 2001-02-28 2015-12-09 2015-12-09 219956 ENSG00000186509 OTTHUMG00000167413 uc001nmj.4 AB065734 NM_001005212 CCDS31543 Q8NGQ5 MGI:3031334 RGD:1334108 OR9Q1 OR9Q1 +HGNC:15328 OR9Q2 olfactory receptor family 9 subfamily Q member 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR9Q2P olfactory receptor, family 9, subfamily Q, member 2 Olfactory receptors, family 9 156 2001-03-28 2004-03-10 2015-12-09 2015-12-09 219957 ENSG00000186513 OTTHUMG00000167414 uc010rka.2 AB065859 NM_001005283 CCDS31544 Q8NGE9 MGI:3031331 RGD:1333595 OR9Q2 OR9Q2 +HGNC:15340 OR9R1P olfactory receptor family 9 subfamily R member 1 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 9, subfamily R, member 1 pseudogene Olfactory receptors, family 9 156 2001-03-28 2015-12-09 2015-12-09 81140 ENSG00000224622 OTTHUMG00000154376 NG_004176 PGOHUM00000239798 OR9R1P +HGNC:31288 OR9S24P olfactory receptor family 9 subfamily S member 24 pseudogene pseudogene pseudogene Approved 2q37.3 02q37.3 OR5J6P "olfactory receptor, family 5, subfamily J, member 6 pseudogene|olfactory receptor, family 9, subfamily S, member 24 pseudogene" Olfactory receptors, family 9 156 2004-02-26 2006-11-22 2015-12-09 2015-12-09 403275 ENSG00000231278 OTTHUMG00000152395 NG_005821 OR9S24P +HGNC:8161 OR10A2 olfactory receptor family 10 subfamily A member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OST363 OR10A2P olfactory receptor, family 10, subfamily A, member 2 Olfactory receptors, family 10 157 1999-12-01 2004-03-10 2015-12-09 2015-12-09 341276 ENSG00000170790 OTTHUMG00000165739 uc001meu.2 BK004293 NM_001004460 CCDS31415 Q9H208 MGI:3030548 RGD:1334002 OR10A2 OR10A2 +HGNC:8162 OR10A3 olfactory receptor family 10 subfamily A member 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "HTPCRX12|HSHTPCRX12" olfactory receptor, family 10, subfamily A, member 3 Olfactory receptors, family 10 157 1999-11-29 2015-12-09 2015-12-09 26496 ENSG00000170683 OTTHUMG00000165672 uc010rbi.3 BK004404 NM_001003745 CCDS31421 P58181 1370859 "MGI:3030350|MGI:3030352" OR10A3 OR10A3 +HGNC:15130 OR10A4 olfactory receptor family 10 subfamily A member 4 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR10A4P "olfactory receptor, family 10, subfamily A, member 4 pseudogene|olfactory receptor, family 10, subfamily A, member 4" Olfactory receptors, family 10 157 2001-03-28 2004-03-10 2015-12-09 2015-12-09 283297 ENSG00000170782 OTTHUMG00000165740 uc010rat.2 AF209506 NM_207186 CCDS7774 Q9H209 MGI:109148 RGD:1333909 OR10A4 OR10A4 +HGNC:15131 OR10A5 olfactory receptor family 10 subfamily A member 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "OR11-403|JCG6" OR10A1 olfactory receptor, family 10, subfamily A, member 5 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 144124 ENSG00000166363 OTTHUMG00000165738 uc001met.2 AF324499 NM_178168 CCDS7773 Q9H207 MGI:3030547 RGD:1332598 OR10A5 608493 OR10A5 +HGNC:15132 OR10A6 olfactory receptor family 10 subfamily A member 6 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 10, subfamily A, member 6 (gene/pseudogene) Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2016-10-10 390093 ENSG00000279000 OTTHUMG00000165671 uc010rbh.2 AB065515 NM_001004461 Q8NH74 MGI:3030353 RGD:1334387 OR10A6 OR10A6 +HGNC:15329 OR10A7 olfactory receptor family 10 subfamily A member 7 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 olfactory receptor, family 10, subfamily A, member 7 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 121364 ENSG00000179919 OTTHUMG00000169860 uc010spf.2 BK004327 NM_001005280 CCDS31815 Q8NGE5 RGD:1332869 OR10A7 OR10A7 +HGNC:14989 OR10AA1P olfactory receptor family 10 subfamily AA member 1 pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 olfactory receptor, family 10, subfamily AA, member 1 pseudogene Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 81487 ENSG00000180409 OTTHUMG00000022779 NG_004278 PGOHUM00000244300 OR10AA1P +HGNC:14804 OR10AB1P olfactory receptor family 10 subfamily AB member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 10, subfamily AB, member 1 pseudogene Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 390091 ENSG00000176716 OTTHUMG00000185959 NG_004153 RGD:1592197 OR10AB1P +HGNC:14758 OR10AC1 olfactory receptor family 10 subfamily AC member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 7q35 07q35 OR10AC1P "olfactory receptor, family 10, subfamily AC, member 1 pseudogene|olfactory receptor, family 10, subfamily AC, member 1 (gene/pseudogene)" Olfactory receptors, family 10 157 2001-02-28 2014-10-02 2015-12-09 2015-12-09 392133 ENSG00000176510 OTTHUMG00000155896 NG_004374 Q8NH08 RGD:1333381 PGOHUM00000233051 OR10AC1P +HGNC:14819 OR10AD1 olfactory receptor family 10 subfamily AD member 1 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 OR10AD1P "olfactory receptor, family 10, subfamily AD, member 1 pseudogene|olfactory receptor, family 10, subfamily AD, member 1" Olfactory receptors, family 10 157 2001-02-28 2002-11-15 2015-12-09 2015-12-09 121275 ENSG00000172640 OTTHUMG00000168027 uc001rrl.2 NM_001004134 CCDS31787 Q8NGE0 "MGI:3030120|MGI:3030121|MGI:3030122" RGD:1560560 OR10AD1 OR10AD1 +HGNC:14990 OR10AE1P olfactory receptor family 10 subfamily AE member 1 pseudogene pseudogene pseudogene Approved 1q23.2 01q23.2 OR10AE2P olfactory receptor, family 10, subfamily AE, member 1 pseudogene Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 81486 ENSG00000271890 OTTHUMG00000185685 NG_004277 OR10AE1P +HGNC:31235 OR10AE3P olfactory receptor family 10 subfamily AE member 3 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 10, subfamily AE, member 3 pseudogene Olfactory receptors, family 10 157 2004-02-26 2015-12-09 2015-12-09 403223 ENSG00000272837 OTTHUMG00000185941 NG_004401 OR10AE3P +HGNC:19606 OR10AF1P olfactory receptor family 10 subfamily AF member 1 pseudogene pseudogene pseudogene Approved 11q12 11q12 olfactory receptor, family 10, subfamily AF, member 1 pseudogene Olfactory receptors, family 10 157 2002-11-04 2015-12-09 2015-12-09 282769 ENSG00000255416 OTTHUMG00000166822 NG_004298 PGOHUM00000242264 OR10AF1P +HGNC:19607 OR10AG1 olfactory receptor family 10 subfamily AG member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 10, subfamily AG, member 1 Olfactory receptors, family 10 157 2002-11-04 2015-12-09 2016-10-05 282770 ENSG00000174970 OTTHUMG00000166824 uc010rit.2 AB065594 NM_001005491 CCDS31514 Q8NH19 MGI:3030957 OR10AG1 OR10AG1 +HGNC:19647 OR10AH1P olfactory receptor family 10 subfamily AH member 1 pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 olfactory receptor, family 10, subfamily AH, member 1 pseudogene Olfactory receptors, family 10 157 2002-11-04 2015-12-09 2015-12-09 402246 ENSG00000272595 OTTHUMG00000185863 NG_004397 PGOHUM00000233105 OR10AH1P +HGNC:31236 OR10AK1P olfactory receptor family 10 subfamily AK member 1 pseudogene pseudogene pseudogene Approved 11q 11q olfactory receptor, family 10, subfamily AK, member 1 pseudogene Olfactory receptors, family 10 157 2004-02-26 2015-12-09 2015-12-09 403224 ENSG00000254807 OTTHUMG00000166823 NG_004402 OR10AK1P +HGNC:8163 OR10B1P olfactory receptor family 10 subfamily B member 1 pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 OR10B2 olfactory receptor, family 10, subfamily B, member 1 pseudogene Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2016-07-26 401903 ENSG00000267961 OTTHUMG00000183216 AC003956 NG_002201 PGOHUM00000294891 OR10B1P +HGNC:8165 OR10C1 olfactory receptor family 10 subfamily C member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "hs6M1-17|OR10C1P" OR10C2 "olfactory receptor, family 10, subfamily C, member 2|olfactory receptor, family 10, subfamily C, member 1|olfactory receptor, family 10, subfamily C, member 1 (gene/pseudogene)" Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2016-10-05 442194 ENSG00000206474 OTTHUMG00000031207 uc011hhs.3 NM_013941 CCDS34364 Q96KK4 MGI:2177478 RGD:1332620 OR10C1 OR10C1 +HGNC:8166 OR10D1P olfactory receptor family 10 subfamily D member 1 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 "OST074|HTPCRX03" OR10D2P olfactory receptor, family 10, subfamily D, member 1 pseudogene Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2015-12-09 26541 ENSG00000196403 OTTHUMG00000154292 X64981 NG_004126 PGOHUM00000257925 OR10D1P +HGNC:8168 OR10D3 olfactory receptor family 10 subfamily D member 3 (putative) other unknown Approved 11q24.2 11q24.2 HTPCRX09 OR10D3P "olfactory receptor, family 10, subfamily D, member 3 pseudogene|olfactory receptor, family 10, subfamily D, member 3 (non-functional)" Olfactory receptors, family 10 157 1999-11-29 2010-06-25 2016-01-29 2016-01-29 26497 ENSG00000197309 OTTHUMG00000165166 uc001pzv.3 X64983 NG_004125 Q8NH80 1370859 RGD:1333668 OR10D3 +HGNC:14770 OR10D4P olfactory receptor family 10 subfamily D member 4 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 "OR10D4|OR10D6P" olfactory receptor, family 10, subfamily D, member 4 pseudogene Olfactory receptors, family 10 157 2001-02-28 2004-03-10 2015-12-09 2015-12-09 390266 ENSG00000186268 OTTHUMG00000165970 NG_003196 Q8NGN7 RGD:1333074 PGOHUM00000257866 OR10D4P +HGNC:14838 OR10D5P olfactory receptor family 10 subfamily D member 5 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 10, subfamily D, member 5 pseudogene Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 79488 ENSG00000213182 OTTHUMG00000154389 NG_002254 PGOHUM00000242916 OR10D5P +HGNC:8169 OR10G1P olfactory receptor family 10 subfamily G member 1 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 10, subfamily G, member 1 pseudogene Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2015-12-09 26540 ENSG00000273586 OTTHUMG00000188541 NG_051490 8188290 PGOHUM00000292292 OR10G1P +HGNC:8170 OR10G2 olfactory receptor family 10 subfamily G member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 10, subfamily G, member 2 Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2015-12-09 26534 ENSG00000255582 OTTHUMG00000168890 uc032ate.2 NM_001005466 CCDS32047 Q8NGC3 8188290 "MGI:3031344|MGI:3031345" RGD:1333427 OR10G2 OR10G2 +HGNC:8171 OR10G3 olfactory receptor family 10 subfamily G member 3 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 10, subfamily G, member 3 Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2015-12-09 26533 ENSG00000169208 OTTHUMG00000168886 uc010tmb.2 NM_001005465 CCDS32046 Q8NGC4 8188290 "MGI:3031346|MGI:3031347" RGD:1334263 OR10G3 OR10G3 +HGNC:14809 OR10G4 olfactory receptor family 10 subfamily G member 4 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 olfactory receptor, family 10, subfamily G, member 4 Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2016-10-05 390264 ENSG00000254737 OTTHUMG00000165966 uc010sac.2 AB065757 NM_001004462 CCDS31702 Q8NGN3 "MGI:3030813|MGI:3030814" OR10G4 OR10G4 +HGNC:14811 OR10G5P olfactory receptor family 10 subfamily G member 5 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 10, subfamily G, member 5 pseudogene Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2016-10-05 79515 ENSG00000226461 OTTHUMG00000165965 NG_002261 PGOHUM00000257924 OR10G5P +HGNC:14836 OR10G6 olfactory receptor family 10 subfamily G member 6 other unknown Approved 11q24.1 11q24.1 OR10G6Q OR10G6P "olfactory receptor, family 10, subfamily G, member 6 pseudogene|olfactory receptor, family 10, subfamily G, member 6" Olfactory receptors, family 10 157 2001-02-28 2004-03-05 2015-12-09 2015-12-09 79490 ENSG00000198674 OTTHUMG00000165964 uc058iqj.1 AB065508 NG_002255 Q8NH81 OR10G6 PGOHUM00000257865 OR10G6 +HGNC:14842 OR10G7 olfactory receptor family 10 subfamily G member 7 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 olfactory receptor, family 10, subfamily G, member 7 Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2016-10-05 390265 ENSG00000182634 OTTHUMG00000165969 uc001pzq.2 AB065754 NM_001004463 CCDS31705 Q8NGN6 MGI:3030812 OR10G7 OR10G7 +HGNC:14845 OR10G8 olfactory receptor family 10 subfamily G member 8 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 olfactory receptor, family 10, subfamily G, member 8 Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2016-10-05 219869 ENSG00000234560 OTTHUMG00000165968 uc001pzp.2 AB065755 NM_001004464 CCDS31704 Q8NGN5 RGD:1333391 OR10G8 OR10G8 +HGNC:15129 OR10G9 olfactory receptor family 10 subfamily G member 9 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 OR10G10P olfactory receptor, family 10, subfamily G, member 9 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2016-10-05 219870 ENSG00000236981 OTTHUMG00000165967 uc010sad.2 AB065756 NM_001001953 CCDS31703 Q8NGN4 "MGI:3030813|MGI:3030814" RGD:1333039 OR10G9 OR10G9 +HGNC:8172 OR10H1 olfactory receptor family 10 subfamily H member 1 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 olfactory receptor, family 10, subfamily H, member 1 Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2015-12-09 26539 ENSG00000186723 OTTHUMG00000182285 uc002nbq.3 AC004510 NM_013940 CCDS12335 Q9Y4A9 "MGI:1333751|MGI:3030073" RGD:1333565 OR10H1 OR10H1 +HGNC:8173 OR10H2 olfactory receptor family 10 subfamily H member 2 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 olfactory receptor, family 10, subfamily H, member 2 Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2015-12-09 26538 ENSG00000171942 OTTHUMG00000182389 uc002nbm.3 AC004597 NM_013939 CCDS12333 O60403 OR10H2 OR10H2 +HGNC:8174 OR10H3 olfactory receptor family 10 subfamily H member 3 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 olfactory receptor, family 10, subfamily H, member 3 Olfactory receptors, family 10 157 1999-12-01 2015-12-09 2015-12-09 26532 ENSG00000171936 OTTHUMG00000182390 uc010xoq.2 NM_013938 CCDS12334 O60404 MGI:1335096 OR10H3 OR10H3 +HGNC:15388 OR10H4 olfactory receptor family 10 subfamily H member 4 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 olfactory receptor, family 10, subfamily H, member 4 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 126541 ENSG00000176231 OTTHUMG00000182268 uc010xov.2 AC011517 NM_001004465 CCDS32941 Q8NGA5 RGD:6502391 OR10H4 OR10H4 +HGNC:15389 OR10H5 olfactory receptor family 10 subfamily H member 5 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 olfactory receptor, family 10, subfamily H, member 5 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 284433 ENSG00000172519 OTTHUMG00000182284 uc010xos.3 AC011537 NM_001004466 CCDS32940 Q8NGA6 MGI:3782645 OR10H5 OR10H5 +HGNC:8175 OR10J1 olfactory receptor family 10 subfamily J member 1 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "HGMP07J|HSHGMP07J" olfactory receptor, family 10, subfamily J, member 1 Olfactory receptors, family 10 157 1999-11-29 2015-12-09 2015-12-09 26476 ENSG00000196184 OTTHUMG00000022737 uc010piv.3 X64995 NM_012351 CCDS1185 P30954 1370859 MGI:3030252 RGD:1595361 OR10J1 OR10J1 +HGNC:14991 OR10J2P olfactory receptor family 10 subfamily J member 2 pseudogene pseudogene pseudogene Approved 1q23.2 01q23.2 olfactory receptor, family 10, subfamily J, member 2 pseudogene Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 391117 ENSG00000248642 OTTHUMG00000037175 NG_004364 PGOHUM00000259502 OR10J2P +HGNC:14992 OR10J3 olfactory receptor family 10 subfamily J member 3 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 OR10J3P olfactory receptor, family 10, subfamily J, member 3 Olfactory receptors, family 10 157 2001-03-28 2004-03-10 2015-12-09 2015-12-09 441911 ENSG00000196266 OTTHUMG00000037233 uc010piu.2 NM_001004467 CCDS30909 Q5JRS4 "MGI:3030052|MGI:3031238" RGD:1333672 OR10J3 OR10J3 +HGNC:15408 OR10J4 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding gene gene with protein product Approved 1q23.2 01q23.2 OST717 OR10J4P "olfactory receptor, family 10, subfamily J, member 4 pseudogene|olfactory receptor, family 10, subfamily J, member 4 (gene/pseudogene)" Olfactory receptors, family 10 157 2001-03-28 2008-06-11 2015-12-09 2015-12-09 391121 ENSG00000249730 OTTHUMG00000022740 uc057mgz.1 NG_004367 P0C629 OR10J4P +HGNC:14993 OR10J5 olfactory receptor family 10 subfamily J member 5 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 olfactory receptor, family 10, subfamily J, member 5 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 127385 ENSG00000184155 OTTHUMG00000022738 uc010piw.2 NM_001004469 CCDS30910 Q8NHC4 MGI:106648 RGD:1333702 OR10J5 OR10J5 +HGNC:14994 OR10J6P olfactory receptor family 10 subfamily J member 6 pseudogene pseudogene pseudogene Approved 1q23.2 01q23.2 OR10J6 olfactory receptor, family 10, subfamily J, member 6 pseudogene Olfactory receptors, family 10 157 2001-03-28 2004-03-10 2015-12-09 2015-12-09 401973 ENSG00000158731 OTTHUMG00000035346 NG_004393 Q8NGY7 PGOHUM00000245036 OR10J6P +HGNC:19637 OR10J7P olfactory receptor family 10 subfamily J member 7 pseudogene pseudogene pseudogene Approved 1q23.2 01q23.2 olfactory receptor, family 10, subfamily J, member 7 pseudogene Olfactory receptors, family 10 157 2002-11-04 2015-12-09 2016-10-05 391119 ENSG00000248442 OTTHUMG00000037231 NG_004365 OR10J7P +HGNC:19638 OR10J8P olfactory receptor family 10 subfamily J member 8 pseudogene pseudogene pseudogene Approved 1q23.2 01q23.2 olfactory receptor, family 10, subfamily J, member 8 pseudogene Olfactory receptors, family 10 157 2002-11-04 2015-12-09 2016-10-05 343409 ENSG00000251686 OTTHUMG00000037229 NG_004308 OR10J8P +HGNC:19639 OR10J9P olfactory receptor family 10 subfamily J member 9 pseudogene pseudogene pseudogene Approved 1q23.2 01q23.2 olfactory receptor, family 10, subfamily J, member 9 pseudogene Olfactory receptors, family 10 157 2002-11-04 2015-12-09 2016-10-05 391120 ENSG00000249197 OTTHUMG00000037232 NG_004366 PGOHUM00000244304 OR10J9P +HGNC:14693 OR10K1 olfactory receptor family 10 subfamily K member 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 10, subfamily K, member 1 Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 391109 ENSG00000173285 OTTHUMG00000017517 uc010pij.2 AP002532 NM_001004473 CCDS30897 Q8NGX5 RGD:1332648 OR10K1 OR10K1 +HGNC:14826 OR10K2 olfactory receptor family 10 subfamily K member 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 10, subfamily K, member 2 Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 391107 ENSG00000180708 OTTHUMG00000019638 uc010pii.2 AB065642 NM_001004476 CCDS30896 Q6IF99 MGI:3030204 RGD:1333116 OR10K2 OR10K2 +HGNC:14689 OR10N1P olfactory receptor family 10 subfamily N member 1 pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 olfactory receptor, family 10, subfamily N, member 1 pseudogene Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 390267 ENSG00000213181 OTTHUMG00000154290 NG_004339 PGOHUM00000257867 OR10N1P +HGNC:15378 OR10P1 olfactory receptor family 10 subfamily P member 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 OST701 "OR10P1P|OR10P2P|OR10P3P" olfactory receptor, family 10, subfamily P, member 1 Olfactory receptors, family 10 157 2001-03-28 2004-03-10 2015-12-09 2015-12-09 121130 ENSG00000175398 OTTHUMG00000169961 uc010spq.3 BK004259 NM_206899 CCDS31828 Q8NGE3 MGI:3030630 RGD:1332909 OR10P1 OR10P1 +HGNC:15134 OR10Q1 olfactory receptor family 10 subfamily Q member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 10, subfamily Q, member 1 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 219960 ENSG00000180475 OTTHUMG00000167542 uc010rkd.2 AB065735 NM_001004471 CCDS31547 Q8NGQ4 "MGI:3031325|MGI:3031328" RGD:1333050 OR10Q1 OR10Q1 +HGNC:15135 OR10Q2P olfactory receptor family 10 subfamily Q member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 10, subfamily Q, member 2 pseudogene Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 81345 ENSG00000272900 OTTHUMG00000186073 NG_004249 PGOHUM00000242297 OR10Q2P +HGNC:14813 OR10R1P olfactory receptor family 10 subfamily R member 1 pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 olfactory receptor, family 10, subfamily R, member 1 pseudogene Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 79513 ENSG00000227445 OTTHUMG00000019628 NG_002259 PGOHUM00000245027 OR10R1P +HGNC:14820 OR10R2 olfactory receptor family 10 subfamily R member 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 OR10R2Q olfactory receptor, family 10, subfamily R, member 2 Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 343406 ENSG00000198965 OTTHUMG00000019632 uc010pik.2 AB065640 NM_001004472 CCDS30898 Q8NGX6 RGD:1333182 OR10R2 OR10R2 +HGNC:14829 OR10R3P olfactory receptor family 10 subfamily R member 3 pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 olfactory receptor, family 10, subfamily R, member 3 pseudogene Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 391110 ENSG00000198703 OTTHUMG00000019630 NG_004362 OR10R3P PGOHUM00000245026 OR10R3P +HGNC:14807 OR10S1 olfactory receptor family 10 subfamily S member 1 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 olfactory receptor, family 10, subfamily S, member 1 Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 219873 ENSG00000196248 OTTHUMG00000165963 uc001pzm.2 BK004509 NM_001004474 CCDS31701 Q8NGN2 MGI:3030816 RGD:1333299 OR10S1 OR10S1 +HGNC:14812 OR10T1P olfactory receptor family 10 subfamily T member 1 pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 olfactory receptor, family 10, subfamily T, member 1 pseudogene Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 79514 ENSG00000203758 OTTHUMG00000019631 NG_002260 PGOHUM00000244296 OR10T1P +HGNC:14816 OR10T2 olfactory receptor family 10 subfamily T member 2 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 10, subfamily T, member 2 Olfactory receptors, family 10 157 2001-02-28 2015-12-09 2015-12-09 128360 ENSG00000186306 OTTHUMG00000017521 uc010pih.2 AB065643 NM_001004475 CCDS30895 Q8NGX3 OR10T2 OR10T2 +HGNC:15332 OR10U1P olfactory receptor family 10 subfamily U member 1 pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 olfactory receptor, family 10, subfamily U, member 1 pseudogene Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 390318 ENSG00000227423 OTTHUMG00000154304 NG_004344 PGOHUM00000239467 OR10U1P +HGNC:15136 OR10V1 olfactory receptor family 10 subfamily V member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 olfactory receptor, family 10, subfamily V, member 1 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 390201 ENSG00000172289 OTTHUMG00000167406 uc001nof.2 AB065807 NM_001005324 CCDS31565 Q8NGI7 MGI:3031254 RGD:1333276 OR10V1 OR10V1 +HGNC:15137 OR10V2P olfactory receptor family 10 subfamily V member 2 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 10, subfamily V, member 2 pseudogene Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 81343 ENSG00000255538 OTTHUMG00000167352 AW847973 NR_045005 PGOHUM00000242753 OR10V2P +HGNC:15138 OR10V3P olfactory receptor family 10 subfamily V member 3 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 10, subfamily V, member 3 pseudogene Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 81342 ENSG00000254743 OTTHUMG00000167351 NG_004247 OR10V3P +HGNC:31237 OR10V7P olfactory receptor family 10 subfamily V member 7 pseudogene pseudogene pseudogene Approved 14q21.2 14q21.2 olfactory receptor, family 10, subfamily V, member 7 pseudogene Olfactory receptors, family 10 157 2004-02-26 2015-12-09 2015-12-09 403225 NG_005817 +HGNC:15139 OR10W1 olfactory receptor family 10 subfamily W member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OR10W1P "olfactory receptor, family 10, subfamily W, member 1 pseudogene|olfactory receptor, family 10, subfamily W, member 1" Olfactory receptors, family 10 157 2001-03-28 2004-03-05 2015-12-09 2015-12-09 81341 ENSG00000172772 OTTHUMG00000167462 uc001nmq.1 AB065850 NM_207374 CCDS7968 Q8NGF6 MGI:3031324 RGD:1333289 OR10W1 OR10W1 +HGNC:14995 OR10X1 olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 1q23.1 01q23.1 OR10X1P "olfactory receptor, family 10, subfamily X, member 1|olfactory receptor, family 10, subfamily X, member 1 (gene/pseudogene)" Olfactory receptors, family 10 157 2001-03-28 2004-03-10 2015-12-09 2016-10-10 128367 ENSG00000279111 OTTHUMG00000019635 uc010pin.2 BK004194 NM_001004477 Q8NGY0 MGI:3030251 RGD:1333184 OR10X1 OR10X1 +HGNC:15140 OR10Y1P olfactory receptor family 10 subfamily Y member 1 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 olfactory receptor, family 10, subfamily Y, member 1 pseudogene Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 81340 ENSG00000254403 OTTHUMG00000167350 AC021809 NG_004245 PGOHUM00000242752 OR10Y1P +HGNC:14996 OR10Z1 olfactory receptor family 10 subfamily Z member 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 olfactory receptor, family 10, subfamily Z, member 1 Olfactory receptors, family 10 157 2001-03-28 2015-12-09 2015-12-09 128368 ENSG00000198967 OTTHUMG00000019637 uc010pio.2 AB065635 NM_001004478 CCDS30901 Q8NGY1 MGI:3030253 RGD:1333906 OR10Z1 OR10Z1 +HGNC:8176 OR11A1 olfactory receptor family 11 subfamily A member 1 protein-coding gene gene with protein product Approved 6p22.2-p21.31 06p22.2-p21.31 hs6M1-18 OR11A2 "olfactory receptor, family 11, subfamily A, member 2|olfactory receptor, family 11, subfamily A, member 1" Olfactory receptors, family 11 159 1999-12-01 2015-12-09 2015-12-09 26531 ENSG00000204694 OTTHUMG00000031225 uc010jrh.2 NM_013937 CCDS34363 Q9GZK7 MGI:2177479 RGD:1333000 OR11A1 OR11A1 +HGNC:15345 OR11G1P olfactory receptor family 11 subfamily G member 1 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 11, subfamily G, member 1 pseudogene Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 390438 ENSG00000258468 OTTHUMG00000170848 NG_004352 PGOHUM00000248040 OR11G1P +HGNC:15346 OR11G2 olfactory receptor family 11 subfamily G member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 11, subfamily G, member 2 Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 390439 ENSG00000196832 OTTHUMG00000167700 uc010tlb.3 NM_001005503 CCDS32032 Q8NGC1 MGI:3030578 RGD:1333151 OR11G2 OR11G2 +HGNC:15404 OR11H1 olfactory receptor family 11 subfamily H member 1 protein-coding gene gene with protein product Approved 22q11.1 22q11.1 OR22-1 olfactory receptor, family 11, subfamily H, member 1 Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 81061 ENSG00000130538 OTTHUMG00000030069 uc011agd.3 "AP000535|AF399611" NM_001005239 CCDS74807 Q8NG94 12213199 OR11H1 OR11H1 +HGNC:14716 OR11H2 olfactory receptor family 11 subfamily H member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "OR11H2P|OR11H8P|C14orf15" "olfactory receptor, family 11, subfamily H, member 8 pseudogene|olfactory receptor, family 11, subfamily H, member 2" Olfactory receptors, family 11 159 2001-02-28 2004-03-10 2015-12-09 2016-09-27 79334 ENSG00000258453 OTTHUMG00000170597 uc058yqs.1 "AB065607|BK004489" NM_001197287 CCDS76655 Q8NH07 OR11H2 +HGNC:15367 OR11H3P olfactory receptor family 11 subfamily H member 3 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 11, subfamily H, member 3 pseudogene Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 81113 ENSG00000258721 OTTHUMG00000171736 NG_004166 PGOHUM00000246645 OR11H3P +HGNC:15347 OR11H4 olfactory receptor family 11 subfamily H member 4 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 11, subfamily H, member 4 Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 390442 ENSG00000176198 OTTHUMG00000170852 uc010tld.3 NM_001004479 CCDS32034 Q8NGC9 "MGI:3030581|MGI:3030583" RGD:1333574 OR11H4 OR11H4 +HGNC:15348 OR11H5P olfactory receptor family 11 subfamily H member 5 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 11, subfamily H, member 5 pseudogene Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 390440 ENSG00000258625 OTTHUMG00000170849 NG_004353 PGOHUM00000248041 OR11H5P +HGNC:15349 OR11H6 olfactory receptor family 11 subfamily H member 6 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 11, subfamily H, member 6 Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 122748 ENSG00000176219 OTTHUMG00000170850 uc010tlc.3 NM_001004480 CCDS32033 Q8NGC7 MGI:3030579 RGD:1334349 OR11H6 OR11H6 +HGNC:15350 OR11H7 olfactory receptor family 11 subfamily H member 7 (gene/pseudogene) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 OR11H7P "olfactory receptor, family 11, subfamily H, member 7 pseudogene|olfactory receptor, family 11, subfamily H, member 7 (gene/pseudogene)" Olfactory receptors, family 11 159 2001-03-28 2008-06-11 2015-12-09 2015-12-09 390441 ENSG00000258806 OTTHUMG00000170851 uc058yra.1 NG_004354 Q8NGC8 MGI:3030580 RGD:9409886 OR11H7P +HGNC:30738 OR11H12 olfactory receptor family 11 subfamily H member 12 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 olfactory receptor, family 11, subfamily H, member 12 Olfactory receptors, family 11 159 2005-03-07 2015-12-09 2015-12-09 440153 ENSG00000257115 OTTHUMG00000170298 uc010tkp.3 NM_001013354 CCDS32017 B2RN74 RGD:1333269 OR11H12 OR11H12 +HGNC:29997 OR11H13P olfactory receptor family 11 subfamily H member 13 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 olfactory receptor, family 11, subfamily H, member 13 pseudogene Olfactory receptors, family 11 159 2005-03-07 2015-12-09 2015-12-09 440159 ENSG00000196143 OTTHUMG00000170504 NG_004865 PGOHUM00000247709 OR11H13P +HGNC:14997 OR11I1P olfactory receptor family 11 subfamily I member 1 pseudogene pseudogene pseudogene Approved 1p13.3 01p13.3 OR11I2P olfactory receptor, family 11, subfamily I, member 1 pseudogene Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 81479 ENSG00000232791 OTTHUMG00000034579 AC025375 NG_003221 PGOHUM00000244843 OR11I1P +HGNC:15369 OR11J1P olfactory receptor family 11 subfamily J member 1 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 11, subfamily J, member 1 pseudogene Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 81111 NG_004165 PGOHUM00000292814 OR11J1P +HGNC:15370 OR11J2P olfactory receptor family 11 subfamily J member 2 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 11, subfamily J, member 2 pseudogene Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 81110 ENSG00000258855 OTTHUMG00000171710 AC021585 NG_004164 PGOHUM00000246972 OR11J2P +HGNC:31238 OR11J5P olfactory receptor family 11 subfamily J member 5 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 11, subfamily J, member 5 pseudogene Olfactory receptors, family 11 159 2004-02-26 2015-12-09 2015-12-09 403226 ENSG00000258494 OTTHUMG00000171711 NG_004403 PGOHUM00000246631 OR11J5P +HGNC:38588 OR11J6P olfactory receptor family 11 subfamily J member 6 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 11, subfamily J, member 6 pseudogene 2010-06-24 2015-12-09 2015-12-09 100288148 NG_022100 PGOHUM00000246643 OR11J6P +HGNC:38589 OR11J7P olfactory receptor family 11 subfamily J member 7 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 11, subfamily J, member 7 pseudogene 2010-06-24 2015-12-09 2015-12-09 100288112 NG_022120 PGOHUM00000246983 OR11J7P +HGNC:15371 OR11K1P olfactory receptor family 11 subfamily K member 1 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 olfactory receptor, family 11, subfamily K, member 1 pseudogene Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 81109 ENSG00000259324 OTTHUMG00000171933 NG_004163 PGOHUM00000292827 OR11K1P +HGNC:19635 OR11K2P olfactory receptor family 11 subfamily K member 2 pseudogene pseudogene pseudogene Approved 14p13 14p13 olfactory receptor, family 11, subfamily K, member 2 pseudogene Olfactory receptors, family 11 159 2002-11-04 2015-12-09 2015-12-09 401742 ENSG00000258438 OTTHUMG00000170598 NG_004392 OR11K2P +HGNC:14998 OR11L1 olfactory receptor family 11 subfamily L member 1 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 11, subfamily L, member 1 Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 391189 ENSG00000197591 OTTHUMG00000040193 uc001idn.1 AB065646 NM_001001959 CCDS31098 Q8NGX0 MGI:3030157 RGD:1334164 OR11L1 OR11L1 +HGNC:15333 OR11M1P olfactory receptor family 11 subfamily M member 1 pseudogene pseudogene pseudogene Approved 12q13.11 12q13.11 olfactory receptor, family 11, subfamily M, member 1 pseudogene Olfactory receptors, family 11 159 2001-03-28 2015-12-09 2015-12-09 121270 ENSG00000224709 OTTHUMG00000154301 AC009775 NG_004284 PGOHUM00000257948 OR11M1P +HGNC:19582 OR11N1P olfactory receptor family 11 subfamily N member 1 pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 olfactory receptor, family 11, subfamily N, member 1 pseudogene Olfactory receptors, family 11 159 2002-11-04 2015-12-09 2015-12-09 392540 ENSG00000185903 OTTHUMG00000022405 NG_004381 OR11N1P +HGNC:19636 OR11P1P olfactory receptor family 11 subfamily P member 1 pseudogene pseudogene pseudogene Approved 14q11 14q11 olfactory receptor, family 11, subfamily P, member 1 pseudogene Olfactory receptors, family 11 159 2002-11-04 2015-12-09 2015-12-09 282795 NG_004302 OR11P1P +HGNC:31239 OR11Q1P olfactory receptor family 11 subfamily Q member 1 pseudogene pseudogene pseudogene Approved Xq26.1 Xq26.1 olfactory receptor, family 11, subfamily Q, member 1 pseudogene Olfactory receptors, family 11 159 2004-02-26 2015-12-09 2015-12-09 403227 ENSG00000237650 OTTHUMG00000022404 NG_004404 PGOHUM00000242011 OR11Q1P +HGNC:8177 OR12D1 olfactory receptor family 12 subfamily D member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 6p22.1 06p22.1 hs6M1-19 OR12D1P "olfactory receptor, family 12, subfamily D, member 1|olfactory receptor, family 12, subfamily D, member 1 pseudogene|olfactory receptor, family 12, subfamily D, member 1 (gene/pseudogene)" Olfactory receptors, family 12 160 1999-12-01 2013-10-02 2015-12-09 2015-12-09 26530 ENSG00000251608 OTTHUMG00000031141 NG_002196 P0DN82 RGD:1334232 OR12D1P +HGNC:8178 OR12D2 olfactory receptor family 12 subfamily D member 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 6p22.1 06p22.1 hs6M1-20 "olfactory receptor, family 12, subfamily D, member 2|olfactory receptor, family 12, subfamily D, member 2 (gene/pseudogene)" Olfactory receptors, family 12 160 1999-12-01 2015-12-09 2016-10-11 26529 ENSG00000280236 OTTHUMG00000031049 uc063mmw.1 NM_013936 P58182 MGI:2177485 RGD:1333138 OR12D2 OR12D2 +HGNC:13963 OR12D3 olfactory receptor family 12 subfamily D member 3 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 hs6M1-27 olfactory receptor, family 12, subfamily D, member 3 Olfactory receptors, family 12 160 2001-04-03 2015-12-09 2015-12-09 81797 ENSG00000112462 OTTHUMG00000031051 uc003nme.3 NM_030959 CCDS4658 Q9UGF7 MGI:2177492 RGD:1303153 OR12D3 OR12D3 +HGNC:14772 OR13A1 olfactory receptor family 13 subfamily A member 1 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 olfactory receptor, family 13, subfamily A, member 1 Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 79290 ENSG00000256574 OTTHUMG00000018080 uc001jcc.1 AB065728 NM_001004297 CCDS31188 Q8NGR1 MGI:3030045 RGD:1333902 OR13A1 OR13A1 +HGNC:14699 OR13C1P olfactory receptor family 13 subfamily C member 1 pseudogene pseudogene pseudogene Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily C, member 1 pseudogene Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 392377 ENSG00000235248 OTTHUMG00000185902 NG_002246 PGOHUM00000304020 OR13C1P +HGNC:14701 OR13C2 olfactory receptor family 13 subfamily C member 2 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily C, member 2 Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 392376 ENSG00000276119 OTTHUMG00000020415 uc011lvq.2 NM_001004481 CCDS35092 Q8NGS9 OR13C2 OR13C2 +HGNC:14704 OR13C3 olfactory receptor family 13 subfamily C member 3 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily C, member 3 Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 138803 ENSG00000204246 OTTHUMG00000020406 uc004bcb.2 NM_001001961 CCDS35089 Q8NGS6 MGI:3030107 RGD:1333321 OR13C3 OR13C3 +HGNC:14722 OR13C4 olfactory receptor family 13 subfamily C member 4 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily C, member 4 Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 138804 ENSG00000148136 OTTHUMG00000020407 uc011lvn.2 NM_001001919 CCDS35088 Q8NGS5 RGD:1333133 OR13C4 OR13C4 +HGNC:15100 OR13C5 olfactory receptor family 13 subfamily C member 5 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily C, member 5 Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 138799 ENSG00000277556 OTTHUMG00000020408 uc011lvp.2 NM_001004482 CCDS35091 Q8NGS8 OR13C5 OR13C5 +HGNC:15101 OR13C6P olfactory receptor family 13 subfamily C member 6 pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 olfactory receptor, family 13, subfamily C, member 6 pseudogene Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 392311 ENSG00000179443 OTTHUMG00000019892 NG_004378 Q8NH95 PGOHUM00000236028 OR13C6P +HGNC:15102 OR13C7 olfactory receptor family 13 subfamily C member 7 (gene/pseudogene) protein-coding gene gene with protein product Approved 9p13.3 09p13.3 OST706 OR13C7P "olfactory receptor, family 13, subfamily C, member 7 pseudogene|olfactory receptor, family 13, subfamily C, member 7 (gene/pseudogene)" Olfactory receptors, family 13 162 2001-03-28 2014-10-02 2015-12-09 2015-12-09 81377 ENSG00000243641 OTTHUMG00000019893 NG_002408 P0DN81 "MGI:1352683|MGI:1352684" RGD:1334076 PGOHUM00000236029 OR13C7P +HGNC:15103 OR13C8 olfactory receptor family 13 subfamily C member 8 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily C, member 8 Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 138802 ENSG00000186943 OTTHUMG00000020409 uc011lvo.2 NM_001004483 CCDS35090 Q8NGS7 MGI:3030106 RGD:1333398 OR13C8 OR13C8 +HGNC:15104 OR13C9 olfactory receptor family 13 subfamily C member 9 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily C, member 9 Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 286362 ENSG00000136839 OTTHUMG00000020416 uc011lvr.2 NM_001001956 CCDS35093 Q8NGT0 RGD:1333551 OR13C9 OR13C9 +HGNC:14695 OR13D1 olfactory receptor family 13 subfamily D member 1 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily D, member 1 Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 286365 ENSG00000179055 OTTHUMG00000020412 uc011lvs.2 NM_001004484 CCDS35094 Q8NGV5 MGI:3030104 RGD:1334138 OR13D1 OR13D1 +HGNC:15105 OR13D2P olfactory receptor family 13 subfamily D member 2 pseudogene pseudogene pseudogene Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily D, member 2 pseudogene Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 392375 ENSG00000237443 OTTHUMG00000020405 NG_004380 PGOHUM00000236742 OR13D2P +HGNC:15106 OR13D3P olfactory receptor family 13 subfamily D member 3 pseudogene pseudogene pseudogene Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily D, member 3 pseudogene Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 402374 ENSG00000188712 OTTHUMG00000020411 NG_004400 PGOHUM00000236744 OR13D3P +HGNC:15107 OR13E1P olfactory receptor family 13 subfamily E member 1 pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 OST741 OR13E2 olfactory receptor, family 13, subfamily E, member 1 pseudogene Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 392308 ENSG00000236083 OTTHUMG00000019877 NG_004377 PGOHUM00000236024 OR13E1P +HGNC:14723 OR13F1 olfactory receptor family 13 subfamily F member 1 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 olfactory receptor, family 13, subfamily F, member 1 Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 138805 ENSG00000186881 OTTHUMG00000020404 uc011lvm.2 NM_001004485 CCDS35087 Q8NGS4 MGI:3030109 RGD:1583730 OR13F1 OR13F1 +HGNC:14999 OR13G1 olfactory receptor family 13 subfamily G member 1 protein-coding gene gene with protein product Approved 1q44 01q44 olfactory receptor, family 13, subfamily G, member 1 Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 441933 ENSG00000197437 OTTHUMG00000040212 uc001idi.1 AB065623 NM_001005487 CCDS31094 Q8NGZ3 MGI:3030143 RGD:1333584 OR13G1 611677 OR13G1 +HGNC:14755 OR13H1 olfactory receptor family 13 subfamily H member 1 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 olfactory receptor, family 13, subfamily H, member 1 Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 347468 ENSG00000171054 OTTHUMG00000022411 uc011muw.2 NM_001004486 CCDS35396 Q8NG92 OR13H1 OR13H1 +HGNC:14732 OR13I1P olfactory receptor family 13 subfamily I member 1 pseudogene pseudogene pseudogene Approved 9q31.1 09q31.1 OR13I2P olfactory receptor, family 13, subfamily I, member 1 pseudogene Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 79538 ENSG00000273423 OTTHUMG00000020410 NG_004626 PGOHUM00000304428 OR13I1P +HGNC:15108 OR13J1 olfactory receptor family 13 subfamily J member 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 olfactory receptor, family 13, subfamily J, member 1 Olfactory receptors, family 13 162 2001-03-28 2015-12-09 2015-12-09 392309 ENSG00000168828 OTTHUMG00000019879 uc011lph.3 NM_001004487 CCDS35011 Q8NGT2 MGI:1860080 RGD:1333724 OR13J1 OR13J1 +HGNC:14721 OR13K1P olfactory receptor family 13 subfamily K member 1 pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 olfactory receptor, family 13, subfamily K, member 1 pseudogene Olfactory receptors, family 13 162 2001-02-28 2015-12-09 2015-12-09 402424 ENSG00000237225 OTTHUMG00000022412 NG_004632 PGOHUM00000242014 OR13K1P +HGNC:31240 OR13Z1P olfactory receptor family 13 subfamily Z member 1 pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 olfactory receptor, family 13, subfamily Z, member 1 pseudogene Olfactory receptors, family 13 162 2004-02-26 2015-12-09 2015-12-09 403228 ENSG00000226653 OTTHUMG00000154280 NG_004405 PGOHUM00000244965 OR13Z1P +HGNC:31241 OR13Z2P olfactory receptor family 13 subfamily Z member 2 pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 olfactory receptor, family 13, subfamily Z, member 2 pseudogene Olfactory receptors, family 13 162 2004-02-26 2015-12-09 2015-12-09 403229 ENSG00000272443 OTTHUMG00000185763 NG_004406 PGOHUM00000244966 OR13Z2P +HGNC:31242 OR13Z3P olfactory receptor family 13 subfamily Z member 3 pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 olfactory receptor, family 13, subfamily Z, member 3 pseudogene Olfactory receptors, family 13 162 2004-02-26 2015-12-09 2015-12-09 403230 ENSG00000272480 OTTHUMG00000185764 NG_005818 +HGNC:15024 OR14A2 olfactory receptor family 14 subfamily A member 2 other unknown Approved 1q44 01q44 "OR5AX1P|OR5AX1" "olfactory receptor, family 5, subfamily AX, member 1 pseudogene|olfactory receptor, family 5, subfamily AX, member 1|olfactory receptor, family 14, subfamily A, member 2" Olfactory receptors, family 14 163 2001-03-28 2008-04-02 2015-12-09 2015-12-09 388761 ENSG00000241128 OTTHUMG00000040207 uc057rau.1 AB065620 NG_002409 Q96R54 RGD:1333387 OR14A2 OR14A2 +HGNC:15022 OR14A16 olfactory receptor family 14 subfamily A member 16 protein-coding gene gene with protein product Approved 1q44 01q44 OR5AT1 "olfactory receptor, family 5, subfamily AT, member 1|olfactory receptor, family 14, subfamily A, member 16" Olfactory receptors, family 14 163 2001-03-28 2008-04-02 2015-12-09 2015-12-09 284532 ENSG00000196772 OTTHUMG00000040199 uc001idm.1 BK004366 NM_001001966 CCDS31097 Q8NHC5 RGD:1334058 OR14A16 OR14A16 +HGNC:15026 OR14C36 olfactory receptor family 14 subfamily C member 36 protein-coding gene gene with protein product Approved 1q44 01q44 OR5BF1 "olfactory receptor, family 5, subfamily BF, member 1|olfactory receptor, family 14, subfamily C, member 36" Olfactory receptors, family 14 163 2001-03-28 2008-04-02 2015-12-09 2015-12-09 127066 ENSG00000177174 OTTHUMG00000040463 uc010pzl.2 BK004466 NM_001001918 CCDS31112 Q8NHC7 MGI:3030135 OR14C36 OR14C36 +HGNC:19575 OR14I1 olfactory receptor family 14 subfamily I member 1 protein-coding gene gene with protein product Approved 1q44 01q44 "OR5BU1P|OR5BU1" "olfactory receptor, family 5, subfamily BU, member 1|olfactory receptor, family 14, subfamily I, member 1" Olfactory receptors, family 14 163 2002-11-04 2008-04-02 2015-12-09 2015-12-09 401994 ENSG00000189181 OTTHUMG00000040378 uc001ieu.1 NM_001004734 CCDS31125 A6ND48 OR14I1 OR14I1 +HGNC:13971 OR14J1 olfactory receptor family 14 subfamily J member 1 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 hs6M1-28 OR5U1 "olfactory receptor, family 5, subfamily U, member 1|olfactory receptor, family 14, subfamily J, member 1" Olfactory receptors, family 14 163 2001-03-28 2008-04-02 2015-12-09 2016-10-05 442191 ENSG00000204695 OTTHUMG00000031184 uc011hhm.2 NM_030946 CCDS34362 Q9UGF5 MGI:2177508 RGD:1333127 OR14J1 OR14J1 +HGNC:15025 OR14K1 olfactory receptor family 14 subfamily K member 1 other unknown Approved 1q44 01q44 OR5AY1 "olfactory receptor, family 5, subfamily AY, member 1|olfactory receptor, family 14, subfamily K, member 1" Olfactory receptors, family 14 163 2001-03-28 2008-04-02 2015-12-09 2015-12-09 343170 ENSG00000153230 OTTHUMG00000040211 uc057rav.1 BK004377 NM_001004732 Q8NGZ2 OR14K1 OR14K1 +HGNC:15023 OR14L1P olfactory receptor family 14 subfamily L member 1 pseudogene pseudogene pseudogene Approved 1q44 01q44 "OR5AV1|OR5AV1P" "olfactory receptor, family 5, subfamily AV, member 1 pseudogene|olfactory receptor, family 14, subfamily L, member 1 pseudogene" Olfactory receptors, family 14 163 2001-03-28 2008-04-02 2015-12-09 2015-12-09 127617 ENSG00000198452 OTTHUMG00000040577 NG_004286 Q8NHC6 OR14L1P +HGNC:8316 OR51A1P olfactory receptor family 51 subfamily A member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 1 pseudogene Olfactory receptors, family 51 164 1999-12-01 2015-12-09 2015-12-09 26537 ENSG00000176752 OTTHUMG00000066604 NG_002199 PGOHUM00000242140 OR51A1P +HGNC:14764 OR51A2 olfactory receptor family 51 subfamily A member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 2 Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 401667 ENSG00000205496 OTTHUMG00000066602 uc010qyt.2 AB065797 NM_001004748 CCDS31368 Q8NGJ7 RGD:1333720 OR51A2 OR51A2 +HGNC:14794 OR51A3P olfactory receptor family 51 subfamily A member 3 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 3 pseudogene Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 79532 ENSG00000227023 OTTHUMG00000066613 NG_002268 PGOHUM00000242137 OR51A3P +HGNC:14795 OR51A4 olfactory receptor family 51 subfamily A member 4 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 4 Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 401666 ENSG00000205497 OTTHUMG00000066614 uc010qys.2 AB065798 NM_001005329 CCDS31367 Q8NGJ6 RGD:1334397 OR51A4 OR51A4 +HGNC:14801 OR51A5P olfactory receptor family 51 subfamily A member 5 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 5 pseudogene Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 79525 ENSG00000225003 OTTHUMG00000066599 NG_002263 PGOHUM00000242138 OR51A5P +HGNC:15187 OR51A6P olfactory receptor family 51 subfamily A member 6 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 6 pseudogene Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 390046 ENSG00000197023 OTTHUMG00000066505 NG_004325 PGOHUM00000250355 OR51A6P +HGNC:15188 OR51A7 olfactory receptor family 51 subfamily A member 7 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 7 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 119687 ENSG00000176895 OTTHUMG00000066502 uc010qyq.2 AB065525 NM_001004749 CCDS31364 Q8NH64 MGI:3030410 RGD:1333806 OR51A7 OR51A7 +HGNC:15189 OR51A8P olfactory receptor family 51 subfamily A member 8 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 8 pseudogene Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 401662 ENSG00000197984 OTTHUMG00000066511 NG_004387 PGOHUM00000242568 OR51A8P +HGNC:15190 OR51A9P olfactory receptor family 51 subfamily A member 9 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily A, member 9 pseudogene Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 390039 ENSG00000180723 OTTHUMG00000154340 NG_004320 PGOHUM00000242132 OR51A9P +HGNC:15185 OR51A10P olfactory receptor family 51 subfamily A member 10 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 "OR51A11P|OR51A13" olfactory receptor, family 51, subfamily A, member 10 pseudogene Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 81295 ENSG00000230484 OTTHUMG00000066900 NG_004229 PGOHUM00000242147 OR51A10P +HGNC:31278 OR51AB1P olfactory receptor family 51 subfamily AB member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily AB, member 1 pseudogene Olfactory receptors, family 51 164 2004-02-26 2015-12-09 2015-12-09 403265 ENSG00000229093 OTTHUMG00000066677 NG_000007 PGOHUM00000242143 OR51AB1P +HGNC:14703 OR51B2 olfactory receptor family 51 subfamily B member 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR51B1P olfactory receptor, family 51, subfamily B, member 2 (gene/pseudogene) Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2016-10-10 79345 ENSG00000279012 OTTHUMG00000066682 uc057yhk.1 AF399503 NM_033180 Q9Y5P1 MGI:1341900 RGD:1333394 OR51B2 OR51B2 +HGNC:14706 OR51B3P olfactory receptor family 51 subfamily B member 3 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily B, member 3 pseudogene Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 79342 ENSG00000223735 OTTHUMG00000066683 NG_004142 PGOHUM00000242144 OR51B3P +HGNC:14708 OR51B4 olfactory receptor family 51 subfamily B member 4 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily B, member 4 Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 79339 ENSG00000183251 OTTHUMG00000066665 uc010qza.3 BC069094 NM_033179 CCDS7757 Q9Y5P0 MGI:1341906 RGD:1332980 OR51B4 OR51B4 +HGNC:19599 OR51B5 olfactory receptor family 51 subfamily B member 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily B, member 5 Olfactory receptors, family 51 164 2002-11-04 2015-12-09 2015-12-09 282763 ENSG00000242180 OTTHUMG00000066676 uc057yhn.1 BK004430 NM_001005567 CCDS31378 Q9H339 RGD:1334425 OR51B5 OR51B5 +HGNC:19600 OR51B6 olfactory receptor family 51 subfamily B member 6 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily B, member 6 Olfactory receptors, family 51 164 2002-11-04 2015-12-09 2015-12-09 390058 ENSG00000176239 OTTHUMG00000066669 uc010qzb.2 NM_001004750 CCDS31379 Q9H340 "MGI:1341910|MGI:3030457" RGD:1333371 OR51B6 OR51B6 +HGNC:31279 OR51B8P olfactory receptor family 51 subfamily B member 8 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily B, member 8 pseudogene Olfactory receptors, family 51 164 2004-02-26 2015-12-09 2015-12-09 403266 ENSG00000236359 OTTHUMG00000066668 NG_004425 PGOHUM00000242145 OR51B8P +HGNC:15191 OR51C1P olfactory receptor family 51 subfamily C member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OST734 "OR51C3P|OR51C2P" olfactory receptor, family 51, subfamily C, member 1 pseudogene Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 401661 ENSG00000197674 OTTHUMG00000186285 NG_004228 RGD:1333228 OR51C1P +HGNC:31280 OR51C4P olfactory receptor family 51 subfamily C member 4 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily C, member 4 pseudogene Olfactory receptors, family 51 164 2004-02-26 2015-12-09 2015-12-09 390041 ENSG00000272664 OTTHUMG00000186287 NG_004322 PGOHUM00000242566 OR51C4P +HGNC:15193 OR51D1 olfactory receptor family 51 subfamily D member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR51D1Q olfactory receptor, family 51, subfamily D, member 1 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 390038 ENSG00000197428 OTTHUMG00000165724 uc010qyk.2 AB065855 NM_001004751 CCDS31357 Q8NGF3 MGI:3030391 RGD:1592737 OR51D1 OR51D1 +HGNC:15194 OR51E1 olfactory receptor family 51 subfamily E member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 GPR136 "OR51E1P|OR52A3P|GPR164" "olfactory receptor, family 51, subfamily E, member 1 pseudogene|olfactory receptor, family 51, subfamily E, member 1" Olfactory receptors, family 51 164 2001-03-28 2004-11-06 2015-12-09 2015-12-09 143503 ENSG00000180785 OTTHUMG00000157024 uc001lzi.5 AY775731 NM_152430 CCDS31358 Q8TCB6 MGI:3030392 RGD:1332833 OR51E1 611267 OR51E1 objectId:653 +HGNC:15195 OR51E2 olfactory receptor family 51 subfamily E member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 PSGR olfactory receptor, family 51, subfamily E, member 2 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2016-10-05 81285 ENSG00000167332 OTTHUMG00000133362 uc001lzk.3 AY033942 NM_030774 CCDS7751 Q9H255 11118034 MGI:2157548 RGD:628858 OR51E2 611268 OR51E2 +HGNC:15428 OR51E3P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:15196 OR51F1 olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR51F1P olfactory receptor, family 51, subfamily F, member 1 (gene/pseudogene) Olfactory receptors, family 51 164 2001-03-28 2004-03-10 2015-12-09 2016-10-10 256892 ENSG00000280021 OTTHUMG00000066503 uc010qyl.2 BK004771 NM_001004752 A6NGY5 MGI:3030400 RGD:1334432 OR51F1 OR51F1 +HGNC:15197 OR51F2 olfactory receptor family 51 subfamily F member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily F, member 2 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 119694 ENSG00000176925 OTTHUMG00000066508 uc010qyn.2 BK004281 NM_001004753 CCDS31361 Q8NH61 MGI:3030402 RGD:6486812 OR51F2 OR51F2 +HGNC:31281 OR51F3P olfactory receptor family 51 subfamily F member 3 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily F, member 3 pseudogene Olfactory receptors, family 51 164 2004-02-26 2015-12-09 2015-12-09 390043 ENSG00000272559 OTTHUMG00000186288 NG_004323 PGOHUM00000264424 OR51F3P +HGNC:31282 OR51F4P olfactory receptor family 51 subfamily F member 4 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily F, member 4 pseudogene Olfactory receptors, family 51 164 2004-02-26 2015-12-09 2015-12-09 390044 ENSG00000273051 OTTHUMG00000186289 NG_004324 PGOHUM00000264425 OR51F4P +HGNC:31283 OR51F5P olfactory receptor family 51 subfamily F member 5 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily F, member 5 pseudogene Olfactory receptors, family 51 164 2004-02-26 2015-12-09 2015-12-09 390040 ENSG00000272634 OTTHUMG00000186286 NG_004321 PGOHUM00000264426 OR51F5P +HGNC:14738 OR51G1 olfactory receptor family 51 subfamily G member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR51G3P olfactory receptor, family 51, subfamily G, member 1 (gene/pseudogene) Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2016-10-10 79324 ENSG00000278870 OTTHUMG00000066532 uc010qyr.2 AB065793 NM_001005237 Q8NGK1 MGI:3030412 RGD:1334292 OR51G1 OR51G1 +HGNC:15198 OR51G2 olfactory receptor family 51 subfamily G member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily G, member 2 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 81282 ENSG00000176893 OTTHUMG00000066501 uc001lzr.1 AB065794 NM_001005238 CCDS31365 Q8NGK0 MGI:3030411 RGD:1332641 OR51G2 OR51G2 +HGNC:14833 OR51H1 olfactory receptor family 51 subfamily H member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR51H1P "olfactory receptor, family 51, subfamily H, member 1 pseudogene|olfactory receptor, family 51, subfamily H, member 1" Olfactory receptors, family 51 164 2001-02-28 2014-10-07 2015-12-09 2015-12-09 401663 ENSG00000176904 OTTHUMG00000066512 NG_004388 Q8NH63 MGI:3030389 RGD:1593885 OR51H1P +HGNC:15199 OR51H2P olfactory receptor family 51 subfamily H member 2 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily H, member 2 pseudogene Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 401664 ENSG00000198217 OTTHUMG00000066500 NG_004389 PGOHUM00000242569 OR51H2P +HGNC:15200 OR51I1 olfactory receptor family 51 subfamily I member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily I, member 1 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 390063 ENSG00000167359 OTTHUMG00000066908 uc010qze.3 BK004429 NM_001005288 CCDS31382 Q9H343 MGI:3030474 RGD:1334127 OR51I1 OR51I1 +HGNC:15201 OR51I2 olfactory receptor family 51 subfamily I member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily I, member 2 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 390064 ENSG00000187918 OTTHUMG00000066902 uc010qzf.3 BK004381 NM_001004754 CCDS31383 Q9H344 MGI:3030475 RGD:1332767 OR51I2 OR51I2 +HGNC:14856 OR51J1 olfactory receptor family 51 subfamily J member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "OR51J2|OR51J1P" "olfactory receptor, family 51, subfamily J, member 1|olfactory receptor, family 51, subfamily J, member 1 (gene/pseudogene)" Olfactory receptors, family 51 164 2001-02-28 2004-03-10 2015-12-09 2015-12-09 79470 ENSG00000184321 OTTHUMG00000066666 uc057yhp.1 NG_002252 Q9H342 RGD:1333481 OR51J1 OR51J1 +HGNC:15202 OR51K1P olfactory receptor family 51 subfamily K member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily K, member 1 pseudogene Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 81278 ENSG00000248424 OTTHUMG00000066890 NG_004226 PGOHUM00000262862 OR51K1P +HGNC:14759 OR51L1 olfactory receptor family 51 subfamily L member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily L, member 1 Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 119682 ENSG00000176798 OTTHUMG00000066605 uc010qyu.2 AB065799 NM_001004755 CCDS31369 Q8NGJ5 RGD:1333532 OR51L1 OR51L1 +HGNC:14847 OR51M1 olfactory receptor family 51 subfamily M member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily M, member 1 Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 390059 ENSG00000184698 OTTHUMG00000066680 uc010qzc.3 BK004382 NM_001004756 CCDS53596 Q9H341 MGI:3030465 OR51M1 OR51M1 +HGNC:14757 OR51N1P olfactory receptor family 51 subfamily N member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily N, member 1 pseudogene Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 119696 ENSG00000176951 OTTHUMG00000066509 NG_004281 PGOHUM00000264427 OR51N1P +HGNC:14762 OR51P1P olfactory receptor family 51 subfamily P member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR51P2P olfactory receptor, family 51, subfamily P, member 1 pseudogene Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 79300 ENSG00000224300 OTTHUMG00000066615 NG_002232 PGOHUM00000242570 OR51P1P +HGNC:14851 OR51Q1 olfactory receptor family 51 subfamily Q member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "olfactory receptor, family 51, subfamily Q, member 1|olfactory receptor, family 51, subfamily Q, member 1 (gene/pseudogene)" Olfactory receptors, family 51 164 2001-02-28 2015-12-09 2015-12-09 390061 ENSG00000167360 OTTHUMG00000066896 uc010qzd.2 AB065531 NM_001004757 CCDS31381 Q8NH59 "MGI:3030469|MGI:3030472" RGD:1334354 OR51Q1 OR51Q1 +HGNC:15203 OR51R1P olfactory receptor family 51 subfamily R member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily R, member 1 pseudogene Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 390034 ENSG00000237272 OTTHUMG00000154338 NG_004318 PGOHUM00000242564 OR51R1P +HGNC:15204 OR51S1 olfactory receptor family 51 subfamily S member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily S, member 1 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 119692 ENSG00000176922 OTTHUMG00000066506 uc010qyo.2 AB065796 NM_001004758 CCDS31362 Q8NGJ8 MGI:3030405 RGD:1333161 OR51S1 OR51S1 +HGNC:15205 OR51T1 olfactory receptor family 51 subfamily T member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 51, subfamily T, member 1 Olfactory receptors, family 51 164 2001-03-28 2015-12-09 2015-12-09 401665 ENSG00000176900 OTTHUMG00000066507 uc010qyp.2 BK004283 NM_001004759 CCDS31363 Q8NGJ9 MGI:3030408 RGD:1563481 OR51T1 OR51T1 +HGNC:19597 OR51V1 olfactory receptor family 51 subfamily V member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR51A12 olfactory receptor, family 51, subfamily V, member 1 Olfactory receptors, family 51 164 2002-11-04 2015-12-09 2015-12-09 283111 ENSG00000176742 OTTHUMG00000066671 uc010qyz.2 BK004432 NM_001004760 CCDS31375 Q9H2C8 RGD:1334390 OR51V1 OR51V1 +HGNC:8318 OR52A1 olfactory receptor family 52 subfamily A member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 HPFH1OR olfactory receptor, family 52, subfamily A, member 1 Olfactory receptors, family 52 165 1999-10-13 2015-12-09 2015-12-09 23538 ENSG00000182070 OTTHUMG00000066603 uc057ygv.1 AF154673 NM_012375 CCDS31374 Q9UKL2 10512676 "MGI:1341789|MGI:1341790" RGD:1333141 OR52A1 OR52A1 +HGNC:15429 OR52A2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:19579 OR52A4P olfactory receptor family 52 subfamily A member 4 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR52A4 "olfactory receptor, family 52, subfamily A, member 4|olfactory receptor, family 52, subfamily A, member 4, pseudogene" Olfactory receptors, family 52 165 2002-11-04 2015-02-27 2015-12-09 2015-12-09 390053 ENSG00000205494 OTTHUMG00000066610 NG_029079 A6NMU1 PGOHUM00000262031 OR52A4 +HGNC:19580 OR52A5 olfactory receptor family 52 subfamily A member 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily A, member 5 Olfactory receptors, family 52 165 2002-11-04 2015-12-09 2015-12-09 390054 ENSG00000171944 OTTHUMG00000066616 uc010qyx.2 BK004433 NM_001005160 CCDS31373 Q9H2C5 "MGI:1341789|MGI:1341790" RGD:1333008 OR52A5 OR52A5 +HGNC:15206 OR52B1P olfactory receptor family 52 subfamily B member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily B, member 1 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81274 ENSG00000180909 OTTHUMG00000187081 NG_004225 RGD:1333229 PGOHUM00000257804 OR52B1P +HGNC:15207 OR52B2 olfactory receptor family 52 subfamily B member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily B, member 2 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2016-01-15 255725 ENSG00000255307 OTTHUMG00000165732 uc010qzy.3 AB065763 NM_001004052 CCDS53598 Q96RD2 MGI:3030525 RGD:1332958 OR52B2 OR52B2 +HGNC:15208 OR52B3P olfactory receptor family 52 subfamily B member 3 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily B, member 3 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 387747 ENSG00000175800 OTTHUMG00000154223 NG_004311 PGOHUM00000242563 OR52B3P +HGNC:15209 OR52B4 olfactory receptor family 52 subfamily B member 4 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily B, member 4 (gene/pseudogene) Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 143496 ENSG00000221996 OTTHUMG00000154222 uc057yfv.1 AB065792 NM_001005161 Q8NGK2 MGI:3030381 RGD:1334081 OR52B4 OR52B4 +HGNC:15210 OR52B5P olfactory receptor family 52 subfamily B member 5 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily B, member 5 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81270 ENSG00000231049 OTTHUMG00000066901 NG_004224 PGOHUM00000257870 OR52B5P +HGNC:15211 OR52B6 olfactory receptor family 52 subfamily B member 6 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily B, member 6 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 340980 ENSG00000187747 OTTHUMG00000066906 uc010qzi.2 AB065858 NM_001005162 CCDS41611 Q8NGF0 MGI:3030452 RGD:1333560 OR52B6 OR52B6 +HGNC:15212 OR52D1 olfactory receptor family 52 subfamily D member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily D, member 1 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390066 ENSG00000181609 OTTHUMG00000066895 uc010qzg.3 BK004276 NM_001005163 CCDS31384 Q9H346 MGI:3030480 RGD:1333972 OR52D1 OR52D1 +HGNC:14766 OR52E1 olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR52E1P "olfactory receptor, family 52, subfamily E, member 1 pseudogene|olfactory receptor, family 52, subfamily E, member 1 gene/pseudogene|olfactory receptor, family 52, subfamily E, member 1 (gene/pseudogene)" Olfactory receptors, family 52 165 2001-02-28 2008-01-23 2015-12-09 2015-12-09 79296 ENSG00000236621 OTTHUMG00000066611 uc057ygt.1 NG_003197 Q8NGJ3 RGD:1333697 PGOHUM00000242572 OR52E1P +HGNC:14769 OR52E2 olfactory receptor family 52 subfamily E member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily E, member 2 Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 119678 ENSG00000176787 OTTHUMG00000066608 uc010qyw.2 AB065800 NM_001005164 CCDS31371 Q8NGJ4 MGI:3030423 RGD:1334015 OR52E2 OR52E2 +HGNC:14793 OR52E3P olfactory receptor family 52 subfamily E member 3 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily E, member 3 pseudogene Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 79533 ENSG00000226157 OTTHUMG00000066609 NG_002269 PGOHUM00000242573 OR52E3P +HGNC:15213 OR52E4 olfactory receptor family 52 subfamily E member 4 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily E, member 4 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390081 ENSG00000180974 OTTHUMG00000168804 uc010qzs.3 AB065817 NM_001005165 CCDS31401 Q8NGH9 MGI:3030511 RGD:1332780 OR52E4 OR52E4 +HGNC:15214 OR52E5 olfactory receptor family 52 subfamily E member 5 other unknown Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily E, member 5 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390082 ENSG00000277932 OTTHUMG00000187075 uc057yiu.1 AB065536 NM_001005166 Q8NH55 RGD:1332760 OR52E5 +HGNC:15215 OR52E6 olfactory receptor family 52 subfamily E member 6 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily E, member 6 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390078 ENSG00000205409 OTTHUMG00000168802 uc010qzq.3 AB065815 NM_001005167 CCDS53597 Q96RD3 RGD:1334364 OR52E6 OR52E6 +HGNC:15216 OR52E7P olfactory receptor family 52 subfamily E member 7 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily E, member 7 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81264 ENSG00000233563 OTTHUMG00000154351 NG_004223 PGOHUM00000242582 OR52E7P +HGNC:15217 OR52E8 olfactory receptor family 52 subfamily E member 8 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "olfactory receptor, family 52, subfamily E, member 8 pseudogene|olfactory receptor, family 52, subfamily E, member 8" Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390079 ENSG00000183269 OTTHUMG00000168803 uc010qzr.3 BK004301 NM_001005168 CCDS31400 Q6IFG1 "MGI:3030505|MGI:3030509" RGD:1333955 OR52E8 OR52E8 +HGNC:15218 OR52H1 olfactory receptor family 52 subfamily H member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily H, member 1 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390067 ENSG00000181616 OTTHUMG00000066909 uc010qzh.2 AB065802 NM_001005289 CCDS31386 Q8NGJ2 MGI:3030482 RGD:1333715 OR52H1 OR52H1 +HGNC:15219 OR52H2P olfactory receptor family 52 subfamily H member 2 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily H, member 2 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81261 ENSG00000248553 OTTHUMG00000066894 NG_004222 PGOHUM00000257802 OR52H2P +HGNC:15220 OR52I1 olfactory receptor family 52 subfamily I member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily I, member 1 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390037 ENSG00000232268 OTTHUMG00000165722 uc010qyi.2 BK004371 NM_001005169 CCDS59223 Q8NGK6 RGD:1593877 OR52I1 OR52I1 +HGNC:15221 OR52I2 olfactory receptor family 52 subfamily I member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily I, member 2 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 143502 ENSG00000226288 OTTHUMG00000165721 uc010qyh.2 BK004264 NM_001005170 CCDS31355 Q8NH67 MGI:3030390 OR52I2 OR52I2 +HGNC:14760 OR52J1P olfactory receptor family 52 subfamily J member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily J, member 1 pseudogene Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 79302 ENSG00000203560 OTTHUMG00000066601 NG_002234 PGOHUM00000242574 OR52J1P +HGNC:14797 OR52J2P olfactory receptor family 52 subfamily J member 2 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR52J4P olfactory receptor, family 52, subfamily J, member 2 pseudogene Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 79529 ENSG00000230261 OTTHUMG00000066606 NG_002266 PGOHUM00000242571 OR52J2P +HGNC:14799 OR52J3 olfactory receptor family 52 subfamily J member 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily J, member 3 Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 119679 ENSG00000205495 OTTHUMG00000066600 uc010qyv.2 AB065530 NM_001001916 CCDS31370 Q8NH60 MGI:3030426 RGD:1333934 OR52J3 OR52J3 +HGNC:15222 OR52K1 olfactory receptor family 52 subfamily K member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily K, member 1 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390036 ENSG00000196778 OTTHUMG00000165705 uc001lza.2 AB065790 NM_001005171 CCDS31352 Q8NGK4 RGD:1333293 OR52K1 OR52K1 +HGNC:15223 OR52K2 olfactory receptor family 52 subfamily K member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily K, member 2 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 119774 ENSG00000181963 OTTHUMG00000165703 uc001lyz.2 AB065791 NM_001005172 CCDS31351 Q8NGK3 MGI:3030386 RGD:1333028 OR52K2 OR52K2 +HGNC:15224 OR52K3P olfactory receptor family 52 subfamily K member 3 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily K, member 3 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390035 ENSG00000225101 OTTHUMG00000165704 AF143328 NG_004319 PGOHUM00000242565 OR52K3P +HGNC:14785 OR52L1 olfactory receptor family 52 subfamily L member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily L, member 1 Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 338751 ENSG00000183313 OTTHUMG00000165374 uc001mcd.2 AB065819 NM_001005173 CCDS44529 Q8NGH7 MGI:3030519 RGD:1334283 OR52L1 OR52L1 +HGNC:14788 OR52L2P olfactory receptor family 52 subfamily L member 2 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR52L2 olfactory receptor, family 52, subfamily L, member 2 pseudogene Olfactory receptors, family 52 165 2001-02-28 2004-03-10 2015-12-09 2015-12-09 79274 ENSG00000262980 OTTHUMG00000177791 NG_003195 Q8NGH6 PGOHUM00000258560 OR52L2P +HGNC:15225 OR52M1 olfactory receptor family 52 subfamily M member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR52M1P "olfactory receptor, family 52, subfamily M, member 1 pseudogene|olfactory receptor, family 52, subfamily M, member 1" Olfactory receptors, family 52 165 2001-03-28 2002-11-15 2015-12-09 2015-12-09 119772 ENSG00000197790 OTTHUMG00000165706 uc010qyf.2 AB065789 NM_001004137 CCDS31353 Q8NGK5 MGI:3030388 RGD:1333547 OR52M1 OR52M1 +HGNC:15226 OR52M2P olfactory receptor family 52 subfamily M member 2 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR52M4 olfactory receptor, family 52, subfamily M, member 2 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 338637 ENSG00000226616 OTTHUMG00000154339 NG_004305 PGOHUM00000242131 OR52M2P +HGNC:15227 OR52M3P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:14853 OR52N1 olfactory receptor family 52 subfamily N member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily N, member 1 Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 79473 ENSG00000181001 OTTHUMG00000168800 uc010qzo.2 AB065538 NM_001001913 CCDS31398 Q8NH53 MGI:3030503 OR52N1 OR52N1 +HGNC:15228 OR52N2 olfactory receptor family 52 subfamily N member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily N, member 2 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390077 ENSG00000180988 OTTHUMG00000168801 uc010qzp.3 AB065816 NM_001005174 CCDS31399 Q8NGI0 MGI:3030500 OR52N2 OR52N2 +HGNC:15229 OR52N3P olfactory receptor family 52 subfamily N member 3 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily N, member 3 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81251 ENSG00000236965 OTTHUMG00000154349 NG_004221 PGOHUM00000242581 OR52N3P +HGNC:15230 OR52N4 olfactory receptor family 52 subfamily N member 4 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "olfactory receptor, family 52, subfamily N, member 4|olfactory receptor, family 52, subfamily N, member 4 (gene/pseudogene)" Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390072 ENSG00000181074 OTTHUMG00000066887 uc001mbu.3 AB065813 NM_001005175 CCDS44528 Q8NGI2 "MGI:3030337|MGI:3030492" RGD:1333167 OR52N4 OR52N4 +HGNC:15231 OR52N5 olfactory receptor family 52 subfamily N member 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR52N5Q olfactory receptor, family 52, subfamily N, member 5 Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 390075 ENSG00000181009 OTTHUMG00000168799 uc010qzn.2 AB065535 NM_001001922 CCDS31397 Q8NH56 MGI:3030503 RGD:1333835 OR52N5 OR52N5 +HGNC:15232 OR52P1P olfactory receptor family 52 subfamily P member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR52P1 olfactory receptor, family 52, subfamily P, member 1 pseudogene Olfactory receptors, family 52 165 2001-03-28 2004-03-10 2015-12-09 2015-12-09 81248 ENSG00000181109 OTTHUMG00000066888 NG_004220 Q8NH57 RGD:1334093 PGOHUM00000257871 OR52P1P +HGNC:15233 OR52P2P olfactory receptor family 52 subfamily P member 2 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily P, member 2 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 119775 ENSG00000171999 OTTHUMG00000165702 NG_004282 PGOHUM00000257800 OR52P2P +HGNC:15234 OR52Q1P olfactory receptor family 52 subfamily Q member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily Q, member 1 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81246 ENSG00000277514 OTTHUMG00000187076 NG_004219 PGOHUM00000242583 OR52Q1P +HGNC:15235 OR52R1 olfactory receptor family 52 subfamily R member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily R, member 1 (gene/pseudogene) Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2016-10-10 119695 ENSG00000279270 OTTHUMG00000066510 uc021qcs.1 BK004282 NM_001005177 Q8NGF1 "MGI:3030403|MGI:3030416|MGI:3030418" RGD:1332815 OR52R1 OR52R1 +HGNC:14805 OR52S1P olfactory receptor family 52 subfamily S member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily S, member 1 pseudogene Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 79521 ENSG00000237354 OTTHUMG00000066607 NG_002262 PGOHUM00000242139 OR52S1P +HGNC:15236 OR52T1P olfactory receptor family 52 subfamily T member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily T, member 1 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81244 ENSG00000233646 OTTHUMG00000066910 NG_004218 PGOHUM00000242150 OR52T1P +HGNC:15237 OR52U1P olfactory receptor family 52 subfamily U member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily U, member 1 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81243 ENSG00000232381 OTTHUMG00000066907 NG_004217 PGOHUM00000242578 OR52U1P +HGNC:15238 OR52V1P olfactory receptor family 52 subfamily V member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily V, member 1 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81242 ENSG00000249633 OTTHUMG00000066905 NG_004216 PGOHUM00000257801 OR52V1P +HGNC:15239 OR52W1 olfactory receptor family 52 subfamily W member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR52W1P olfactory receptor, family 52, subfamily W, member 1 Olfactory receptors, family 52 165 2001-03-28 2004-03-10 2015-12-09 2015-12-09 120787 ENSG00000175485 OTTHUMG00000165378 uc010qzz.3 AB065511 NM_001005178 CCDS31407 Q6IF63 MGI:3030526 RGD:1594988 OR52W1 OR52W1 +HGNC:14790 OR52X1P olfactory receptor family 52 subfamily X member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 52, subfamily X, member 1 pseudogene Olfactory receptors, family 52 165 2001-02-28 2015-12-09 2015-12-09 79272 ENSG00000234895 OTTHUMG00000154352 NG_002220 PGOHUM00000242155 OR52X1P +HGNC:15240 OR52Y1P olfactory receptor family 52 subfamily Y member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR52Y2P olfactory receptor, family 52, subfamily Y, member 1 pseudogene Olfactory receptors, family 52 165 2001-03-28 2015-12-09 2015-12-09 81240 ENSG00000231070 OTTHUMG00000066504 NG_004215 PGOHUM00000242136 OR52Y1P +HGNC:19596 OR52Z1 olfactory receptor family 52 subfamily Z member 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR52Z1P "olfactory receptor, family 52, subfamily Z, member 1 pseudogene|olfactory receptor, family 52, subfamily Z, member 1 (gene/pseudogene)" Olfactory receptors, family 52 165 2002-11-04 2008-06-11 2015-12-09 2015-12-09 283110 ENSG00000176748 OTTHUMG00000066624 uc021qct.2 NG_004304 P0C646 MGI:1341911 RGD:1334327 PGOHUM00000242141 OR52Z1P +HGNC:15241 OR55B1P olfactory receptor family 55 subfamily B member 1 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 "OR55B2P|OR55C1P" olfactory receptor, family 55, subfamily B, member 1 pseudogene Olfactory receptors, family 55 166 2001-03-28 2015-12-09 2015-12-09 390030 ENSG00000231548 OTTHUMG00000154224 NG_004317 PGOHUM00000257796 OR55B1P +HGNC:14781 OR56A1 olfactory receptor family 56 subfamily A member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 56, subfamily A, member 1 Olfactory receptors, family 56 167 2001-02-28 2015-12-09 2015-12-09 120796 ENSG00000180934 OTTHUMG00000165377 uc010qzw.2 AB065821 NM_001001917 CCDS31405 Q8NGH5 OR56A1 OR56A1 +HGNC:14782 OR56A2P entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-07-25 +HGNC:14786 OR56A3 olfactory receptor family 56 subfamily A member 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "OR56A6|OR56A3P" olfactory receptor, family 56, subfamily A, member 3 Olfactory receptors, family 56 167 2001-02-28 2004-03-10 2015-12-09 2015-12-09 390083 ENSG00000184478 OTTHUMG00000165373 uc010qzt.3 NM_001003443 CCDS41614 Q8NH54 "MGI:3030513|MGI:3030515" RGD:1332687 OR56A3 OR56A3 +HGNC:14791 OR56A4 olfactory receptor family 56 subfamily A member 4 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 56, subfamily A, member 4 Olfactory receptors, family 56 167 2001-02-28 2015-12-09 2015-12-09 120793 ENSG00000183389 OTTHUMG00000165376 uc010qzv.3 BK004255 NM_001005179 CCDS31404 Q8NGH8 MGI:3030518 RGD:1332789 OR56A4 OR56A4 +HGNC:14792 OR56A5 olfactory receptor family 56 subfamily A member 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR56A5P olfactory receptor, family 56, subfamily A, member 5 Olfactory receptors, family 56 167 2001-02-28 2004-03-10 2015-12-09 2015-12-09 390084 ENSG00000188691 OTTHUMG00000165730 uc010qzu.2 XM_001715165 CCDS73248 P0C7T3 MGI:3030517 OR56A5 +HGNC:15244 OR56A7P olfactory receptor family 56 subfamily A member 7 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 56, subfamily A, member 7 pseudogene Olfactory receptors, family 56 167 2001-03-28 2015-12-09 2015-12-09 81236 ENSG00000255481 OTTHUMG00000165731 NG_004214 PGOHUM00000242154 OR56A7P +HGNC:15245 OR56B1 olfactory receptor family 56 subfamily B member 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OR56B1P olfactory receptor, family 56, subfamily B, member 1 Olfactory receptors, family 56 167 2001-03-28 2004-03-10 2015-12-09 2015-12-09 387748 ENSG00000181023 OTTHUMG00000066891 uc001mbt.3 BK004386 NM_001005180 CCDS31395 Q8NGI3 "MGI:3030338|MGI:3030491" RGD:1334411 OR56B1 OR56B1 +HGNC:15246 OR56B2P olfactory receptor family 56 subfamily B member 2 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 OR56B2 "olfactory receptor, family 56, subfamily B, member 2|olfactory receptor, family 56, subfamily B, member 2 pseudogene" Olfactory receptors, family 56 167 2001-03-28 2004-03-10 2015-12-09 2015-12-09 390073 ENSG00000181017 OTTHUMG00000168798 NG_004326 Q8NGI1 RGD:1333757 PGOHUM00000242580 OR56B2P +HGNC:15247 OR56B3P olfactory receptor family 56 subfamily B member 3 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 olfactory receptor, family 56, subfamily B, member 3 pseudogene Olfactory receptors, family 56 167 2001-03-28 2015-12-09 2015-12-09 401675 ENSG00000180913 OTTHUMG00000187058 NG_004390 OR56B3P +HGNC:15248 OR56B4 olfactory receptor family 56 subfamily B member 4 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 olfactory receptor, family 56, subfamily B, member 4 Olfactory receptors, family 56 167 2001-03-28 2015-12-09 2015-12-09 196335 ENSG00000180919 OTTHUMG00000165531 uc010qzx.3 AB065513 NM_001005181 CCDS31406 Q8NH76 MGI:3030497 RGD:1333227 OR56B4 OR56B4 +HGNC:25896 ORAI1 ORAI calcium release-activated calcium modulator 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "FLJ14466|CRACM1" calcium release-activated calcium modulator 1 TMEM142A transmembrane protein 142A ORAI calcium release-activated calcium modulators 668 2006-04-10 2007-08-14 2007-08-14 2016-10-12 84876 ENSG00000276045 OTTHUMG00000169073 uc031zps.1 AK027372 NM_032790 Q96D31 16582901 MGI:1925542 RGD:1311873 "ORAI1base: Mutation registry for severe combined immunodeficiency |http://structure.bmc.lu.se/idbase/ORAI1base/|LRG_93|http://www.lrg-sequence.org/LRG/LRG_93" ORAI1 610277 201295 +HGNC:21667 ORAI2 ORAI calcium release-activated calcium modulator 2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "CBCIP2|FLJ12474|FLJ14733|H_NH0514P08.8" CAP-binding protein complex interacting protein 2 "C7orf19|TMEM142B" "chromosome 7 open reading frame 19|transmembrane protein 142B" ORAI calcium release-activated calcium modulators 668 2003-07-09 2007-08-14 2007-08-14 2016-07-18 80228 ENSG00000160991 OTTHUMG00000157722 uc003uzj.3 AF258552 NM_032831 CCDS5722 Q96SN7 "16582901|23890118" MGI:2443195 RGD:1310213 ORAI2 610929 +HGNC:28185 ORAI3 ORAI calcium release-activated calcium modulator 3 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC13024 TMEM142C transmembrane protein 142C ORAI calcium release-activated calcium modulators 668 2006-06-20 2007-08-14 2007-08-14 2016-07-18 93129 ENSG00000175938 OTTHUMG00000176768 uc002eac.4 BC006126 NM_152288 CCDS10697 Q9BRQ5 "16582901|26956485|26718630|23890118" MGI:3039586 RGD:1306538 ORAI3 610930 +HGNC:17589 ORAOV1 oral cancer overexpressed 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 TAOS1 oral cancer overexpressed protein 1-A 2002-04-26 2016-06-07 220064 ENSG00000149716 OTTHUMG00000167885 uc001opc.4 NM_153451 CCDS8192 Q8WV07 12172009 MGI:1919534 RGD:1304637 ORAOV1 607224 +HGNC:39203 ORAOV1P1 oral cancer overexpressed 1 pseudogene 1 pseudogene pseudogene Approved 4q35.1 04q35.1 2010-11-23 2010-11-29 100873907 ENSG00000251008 OTTHUMG00000160357 NG_032235 PGOHUM00000245789 +HGNC:8487 ORC1 origin recognition complex subunit 1 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "HSORC1|PARC1" "origin recognition complex, subunit 1, S. cerevisiae, homolog-like|origin recognition complex 1|replication control protein 1" ORC1L "origin recognition complex, subunit 1 (yeast homolog)-like|origin recognition complex, subunit 1-like (yeast)|origin recognition complex, subunit 1 homolog (S. cerevisiae)|origin recognition complex, subunit 1" "AAA ATPases|Origin recognition complex " "413|960" 1997-06-24 2010-10-12 2015-11-12 2016-10-05 4998 ENSG00000085840 OTTHUMG00000008104 uc001ctt.4 NM_004153 CCDS566 Q13415 8884289 MGI:1328337 RGD:631435 ORC1 601902 260588 +HGNC:8488 ORC2 origin recognition complex subunit 2 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 ORC2L "origin recognition complex, subunit 2 (yeast homolog)-like|origin recognition complex, subunit 2-like (yeast)|origin recognition complex, subunit 2 homolog (yeast)|origin recognition complex, subunit 2" Origin recognition complex 960 1995-09-28 2010-10-12 2015-11-12 2016-10-05 4999 ENSG00000115942 OTTHUMG00000132783 uc002uwr.4 NM_006190 CCDS2334 Q13416 8808289 MGI:1328306 RGD:1311844 ORC2 601182 +HGNC:8489 ORC3 origin recognition complex subunit 3 protein-coding gene gene with protein product Approved 6q15 06q15 "IMAGE50150|LATHEO" ORC3L "origin recognition complex, subunit 3 (yeast homolog)-like|origin recognition complex, subunit 3-like (yeast)|origin recognition complex, subunit 3 honolog (yeast)|origin recognition complex, subunit 3" Origin recognition complex 960 1999-11-16 2010-10-12 2015-11-12 2016-10-05 23595 ENSG00000135336 OTTHUMG00000015179 uc003pmg.4 AF093535 XM_017010632 "CCDS5012|CCDS43486|CCDS56440" Q9UBD5 "9829972|10402192" MGI:1354944 RGD:1308457 ORC3 604972 +HGNC:8490 ORC4 origin recognition complex subunit 4 protein-coding gene gene with protein product Approved 2q23.1 02q23.1 "HsORC4|Orc4p" ORC4L "origin recognition complex, subunit 4 (yeast homolog)-like|origin recognition complex, subunit 4-like (yeast)|origin recognition complex, subunit 4-like (S. cerevisiae)|origin recognition complex, subunit 4 homolog (S. cerevisiae)|origin recognition complex, subunit 4" "AAA ATPases|Origin recognition complex " "413|960" 1998-08-26 2010-10-12 2015-11-12 2016-10-05 5000 ENSG00000115947 OTTHUMG00000131849 uc002twk.3 AF022108 NM_181742 "CCDS2187|CCDS54404|CCDS54405" O43929 "9353276|9691185" MGI:1347043 RGD:735212 ORC4 603056 260335 +HGNC:8491 ORC5 origin recognition complex subunit 5 protein-coding gene gene with protein product Approved 7q22.1-q22.2 07q22.1-q22.2 "Orc5p|ORC5T|PPP1R117" protein phosphatase 1, regulatory subunit 117 ORC5L "origin recognition complex, subunit 5 (yeast homolog)-like|origin recognition complex, subunit 5-like (yeast)|origin recognition complex, subunit 5 homolog (yeast)|origin recognition complex, subunit 5" "Protein phosphatase 1 regulatory subunits|Origin recognition complex " "694|960" 1998-02-11 2010-10-12 2015-11-12 2016-10-11 5001 ENSG00000164815 OTTHUMG00000157275 uc003vcb.3 NM_002553 "CCDS5734|CCDS47681" O43913 "9417919|9829972" MGI:1347044 RGD:1561088 ORC5 602331 +HGNC:17151 ORC6 origin recognition complex subunit 6 protein-coding gene gene with protein product Approved 16q11.2 16q11.2 ORC6L "origin recognition complex, subunit 6 homolog-like (yeast)|origin recognition complex, subunit 6 like (yeast)|origin recognition complex, subunit 6" Origin recognition complex 960 2002-02-14 2010-10-12 2015-11-12 2016-10-05 23594 ENSG00000091651 OTTHUMG00000132539 uc002eeh.3 AF139658 XM_011522978 CCDS10722 Q9Y5N6 10945994 MGI:1929285 RGD:1311437 ORC6 607213 260339 +HGNC:8498 ORM1 orosomucoid 1 protein-coding gene gene with protein product Approved 9q32 09q32 Lipocalins 631 2001-06-22 2014-11-19 5004 ENSG00000229314 OTTHUMG00000021012 uc004bik.5 NM_000607 CCDS6803 P02763 RGD:67390 ORM1 138600 +HGNC:8499 ORM2 orosomucoid 2 protein-coding gene gene with protein product Approved 9q32 09q32 "AGP-B|AGP-B'|AGP2" alpha-1-acid glycoprotein, type 2 Lipocalins 631 1991-03-11 2015-09-03 5005 ENSG00000228278 OTTHUMG00000021014 uc004bil.4 NM_000608 CCDS6804 P19652 "4711474|2970990" "MGI:97443|MGI:97444|MGI:97445" ORM2 138610 +HGNC:16036 ORMDL1 ORMDL sphingolipid biosynthesis regulator 1 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 "ORM1 (S. cerevisiae)-like 1|ORM1-like 1 (S. cerevisiae)" 2001-07-27 2014-06-16 2016-10-05 94101 ENSG00000128699 OTTHUMG00000132661 uc002ure.5 NM_016467 CCDS2301 Q9P0S3 "12093374|23066021" MGI:2181669 RGD:2300146 ORMDL1 610073 +HGNC:16037 ORMDL2 ORMDL sphingolipid biosynthesis regulator 2 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "HSPC160|adoplin-2|MST095|MSTP095" "ORM1 (S. cerevisiae)-like 2|ORM1-like 2 (S. cerevisiae)" 2001-07-27 2014-06-16 2014-06-16 29095 ENSG00000123353 OTTHUMG00000170202 uc001shw.2 AF395707 NM_014182 CCDS8893 Q53FV1 "12093374|23066021" MGI:1914094 RGD:1305642 ORMDL2 610074 +HGNC:16038 ORMDL3 ORMDL sphingolipid biosynthesis regulator 3 protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "ORM1 (S. cerevisiae)-like 3|ORM1-like 3 (S. cerevisiae)" 2001-07-27 2014-06-16 2016-10-05 94103 ENSG00000172057 OTTHUMG00000133249 uc002htk.3 NM_139280 CCDS11355 Q8N138 23066021 MGI:1913862 RGD:1560577 ORMDL3 610075 +HGNC:16994 OS9 OS9, endoplasmic reticulum lectin protein-coding gene gene with protein product Approved 12q13 12q13 "OS-9|ERLEC2" "endoplasmic reticulum lectin 2|erlectin 2" osteosarcoma amplified 9, endoplasmic reticulum lectin MRH domain containing 1233 2009-02-27 2016-05-16 2016-05-16 10956 ENSG00000135506 OTTHUMG00000170284 uc001spj.4 AB002806 NM_006812 "CCDS31843|CCDS31844|CCDS31845|CCDS31846|CCDS58246|CCDS58247|CCDS58248|CCDS58249" Q13438 "8634085|9498564|19346256|18264092|26721884" MGI:1924301 RGD:1359574 OS9 609677 +HGNC:8503 OSBP oxysterol binding protein protein-coding gene gene with protein product Approved 11q12.1 11q12.1 OSBP1 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 1990-01-03 2016-10-05 5007 ENSG00000110048 OTTHUMG00000167422 uc001noc.1 AF185696 NM_002556 CCDS7974 P22059 MGI:97447 RGD:1308069 OSBP 167040 +HGNC:8504 OSBP2 oxysterol binding protein 2 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "KIAA1664|ORP-4|ORP4" OSBPL1 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 1999-10-29 2014-11-19 23762 ENSG00000184792 OTTHUMG00000151153 uc003aiy.1 NM_030758 "CCDS43002|CCDS63448|CCDS63449|CCDS63450|CCDS63451|CCDS63446" Q969R2 "10591208|11278871|11802775" MGI:1921559 RGD:1310505 OSBP2 606729 +HGNC:16398 OSBPL1A oxysterol binding protein like 1A protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "ORP-1|ORP1" OSBPL1B "oxysterol binding protein-like 1B|oxysterol binding protein-like 1A" "Ankyrin repeat domain containing|Oxysterol binding proteins" "403|670" 2001-09-28 2014-06-03 2015-11-16 2015-11-16 114876 ENSG00000141447 OTTHUMG00000131944 uc002kve.5 "AF392449|AF274714" NM_080597 "CCDS11884|CCDS11885|CCDS56056" Q9BXW6 "11279184|10588946" MGI:1927551 RGD:628888 OSBPL1A 606730 +HGNC:15761 OSBPL2 oxysterol binding protein like 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "KIAA0772|ORP-2|DFNA67" "oxysterol-binding protein-like 2|oxysterol binding protein-like 2" Oxysterol binding proteins 670 2001-05-31 2015-11-16 2016-10-05 9885 ENSG00000130703 OTTHUMG00000032909 uc002yck.3 AB018315 NM_014835 "CCDS13494|CCDS13495|CCDS63323" Q9H1P3 "10588946|11861666|25077649" MGI:2442832 RGD:1311312 OSBPL2 606731 422342 +HGNC:16370 OSBPL3 oxysterol binding protein like 3 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "ORP-3|ORP3|KIAA0704" OSBP3 oxysterol binding protein-like 3 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 2001-08-10 2015-11-16 2015-11-16 26031 ENSG00000070882 OTTHUMG00000023277 uc003sxf.5 AB014604 XM_011515258 "CCDS5390|CCDS5391|CCDS5392|CCDS47564" Q9H4L5 9734811 MGI:1918970 RGD:1564287 OSBPL3 606732 +HGNC:16392 OSBPL5 oxysterol binding protein like 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "KIAA1534|ORP5" oxysterol binding protein-like 5 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 2001-09-28 2015-11-16 2015-11-16 114879 ENSG00000021762 OTTHUMG00000011702 uc001lxk.3 AF392453 XM_017017163 "CCDS31343|CCDS31344" Q9H0X9 MGI:1930265 RGD:1308402 OSBPL5 606733 +HGNC:16388 OSBPL6 oxysterol binding protein like 6 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 ORP6 OSBP-related protein 6 oxysterol binding protein-like 6 Oxysterol binding proteins 670 2001-09-28 2015-11-16 2016-10-05 114880 ENSG00000079156 OTTHUMG00000132579 uc002ulx.4 AF392448 NM_032523 "CCDS2277|CCDS2278|CCDS56150|CCDS56151|CCDS56152" Q9BZF3 11483621 MGI:2139014 RGD:1308887 OSBPL6 606734 +HGNC:16387 OSBPL7 oxysterol binding protein like 7 protein-coding gene gene with protein product Approved 17q21 17q21 "ORP7|MGC71150" oxysterol binding protein-like 7 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 2001-09-28 2015-11-16 2015-11-16 114881 ENSG00000006025 OTTHUMG00000178288 uc060gpw.1 AF392446 NM_017731 CCDS11515 Q9BZF2 "14593528|11735225" MGI:1918490 RGD:1309141 OSBPL7 606735 +HGNC:16396 OSBPL8 oxysterol binding protein like 8 protein-coding gene gene with protein product Approved 12q14 12q14 "OSBP10|ORP8|MST120|MSTP120" oxysterol binding protein-like 8 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 2001-09-28 2015-11-16 2015-11-16 114882 ENSG00000091039 OTTHUMG00000169876 uc001sye.2 AF392452 NM_020841 "CCDS31862|CCDS41814" Q9BZF1 "1735225|17991739" MGI:2443807 RGD:1561474 OSBPL8 606736 +HGNC:16386 OSBPL9 oxysterol binding protein like 9 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 oxysterol binding protein-like 9 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 2001-09-28 2015-11-16 2016-04-25 114883 ENSG00000117859 OTTHUMG00000008234 uc001cst.5 AF392445 XM_011540599 "CCDS41332|CCDS41333|CCDS41334|CCDS44145|CCDS55598|CCDS558|CCDS81322" Q96SU4 MGI:1923784 RGD:1311508 OSBPL9 606737 +HGNC:48731 OSBPL9P1 oxysterol binding protein like 9 pseudogene 1 pseudogene pseudogene Approved 3p12.2 03p12.2 oxysterol binding protein-like 9 pseudogene 1 2013-06-07 2015-11-16 2015-11-16 100130821 ENSG00000271389 OTTHUMG00000158929 NG_022251 PGOHUM00000238083 +HGNC:48732 OSBPL9P2 oxysterol binding protein like 9 pseudogene 2 pseudogene pseudogene Approved 11q14.3 11q14.3 oxysterol binding protein-like 9 pseudogene 2 2013-06-07 2015-11-16 2015-11-16 100130038 ENSG00000254677 OTTHUMG00000167313 NG_023263 PGOHUM00000242421 +HGNC:48733 OSBPL9P3 oxysterol binding protein like 9 pseudogene 3 pseudogene pseudogene Approved 11q14.3 11q14.3 oxysterol binding protein-like 9 pseudogene 3 2013-06-07 2015-11-16 2015-11-16 100420591 ENSG00000255070 OTTHUMG00000167314 NG_024546 PGOHUM00000242855 +HGNC:48734 OSBPL9P4 oxysterol binding protein like 9 pseudogene 4 pseudogene pseudogene Approved 12q14.3 12q14.3 oxysterol binding protein-like 9 pseudogene 4 2013-06-07 2015-11-16 2015-11-16 100498661 ENSG00000256420 OTTHUMG00000169032 NG_023269 PGOHUM00000239503 +HGNC:48735 OSBPL9P5 oxysterol binding protein like 9 pseudogene 5 pseudogene pseudogene Approved 12q14.3 12q14.3 oxysterol binding protein-like 9 pseudogene 5 2013-06-07 2015-11-16 2015-11-16 106480232 ENSG00000256285 OTTHUMG00000169031 NG_043747 PGOHUM00000239836 +HGNC:48736 OSBPL9P6 oxysterol binding protein like 9 pseudogene 6 pseudogene pseudogene Approved 7p14.3 07p14.3 oxysterol binding protein-like 9 pseudogene 6 2013-06-07 2015-11-16 2015-11-16 100533673 NG_028678 PGOHUM00000302569 +HGNC:16395 OSBPL10 oxysterol binding protein like 10 protein-coding gene gene with protein product Approved 3p23 03p23 oxysterol binding protein-like 10 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 2001-09-28 2015-11-16 2015-11-16 114884 ENSG00000144645 OTTHUMG00000130672 uc021wuu.2 AF392451 XM_005264844 "CCDS2651|CCDS54559" Q9BXB5 MGI:1921736 RGD:1561652 OSBPL10 606738 +HGNC:40767 OSBPL10-AS1 OSBPL10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p23 03p23 OSBPL10 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874206 ENSG00000232490 OTTHUMG00000155828 uc031ryt.2 NR_049771 +HGNC:16397 OSBPL11 oxysterol binding protein like 11 protein-coding gene gene with protein product Approved 3q21.2 03q21.2 "ORP-11|ORP11|FLJ13012|FLJ13164" oxysterol binding protein-like 11 "Oxysterol binding proteins|Pleckstrin homology domain containing" "670|682" 2001-09-28 2015-11-16 2016-10-05 114885 ENSG00000144909 OTTHUMG00000159571 uc003eic.4 AF392454 NM_022776 CCDS3033 Q9BXB4 MGI:2146553 RGD:1307294 OSBPL11 606739 +HGNC:29960 OSCAR osteoclast associated, immunoglobulin-like receptor protein-coding gene gene with protein product Approved 19q13.42 19q13.42 Immunoglobulin like domain containing 594 2007-06-21 2014-11-18 126014 ENSG00000170909 OTTHUMG00000064966 uc002qda.5 AK130199 NM_133169 "CCDS12873|CCDS12874|CCDS12875|CCDS12876|CCDS62789|CCDS74444" Q8IYS5 11805147 MGI:2179720 RGD:1559897 OSCAR 606862 +HGNC:29971 OSCP1 organic solute carrier partner 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 NOR1 oxidored nitro domain containing protein C1orf102 chromosome 1 open reading frame 102 2005-06-15 2009-07-06 2009-07-06 2016-04-25 127700 ENSG00000116885 OTTHUMG00000008139 uc001caq.4 NM_145047 "CCDS409|CCDS410|CCDS81301" Q8WVF1 12477932 MGI:1916308 RGD:1306596 OSCP1 608854 +HGNC:16105 OSER1 oxidative stress responsive serine rich 1 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ1183I21.1|HSPC207|Perit1|Osr1" "peroxide-inducible transcript 1|oxidative stress-responsive 1" C20orf111 "chromosome 20 open reading frame 111|oxidative stress responsive serine-rich 1" 2001-07-17 2013-05-17 2016-04-06 2016-10-05 51526 ENSG00000132823 OTTHUMG00000032518 AL035447 NM_016470 CCDS13327 Q9NX31 17148688 MGI:1913930 RGD:1303142 +HGNC:48585 OSER1-AS1 OSER1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 20q13.12 20q13.12 2013-05-17 2013-05-17 2014-02-12 100505783 ENSG00000223891 OTTHUMG00000032521 NR_038337 +HGNC:18028 OSGEP O-sialoglycoprotein endopeptidase protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "PRSMG1|GCPL1|OSGEP1|KAE1" 2002-01-23 2016-10-05 55644 ENSG00000092094 OTTHUMG00000029543 uc001vxf.4 AB050442 NM_017807 CCDS9549 Q9NPF4 12039036 MGI:1913496 RGD:1308578 OSGEP 610107 3.4.24.57 +HGNC:23075 OSGEPL1 O-sialoglycoprotein endopeptidase like 1 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 "Qri7|OSGEPL" O-sialoglycoprotein endopeptidase-like 1 2003-09-03 2016-08-11 2016-10-05 64172 ENSG00000128694 OTTHUMG00000164096 uc002uqz.2 AJ295148 NM_022353 CCDS46472 Q9H4B0 19578062 MGI:1919335 RGD:1305575 OSGEPL1 +HGNC:41009 OSGEPL1-AS1 OSGEPL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q32.2 02q32.2 OSGEPL1 antisense RNA 1 (non-protein coding) 2012-03-07 2012-08-15 2014-11-19 101409258 ENSG00000253559 OTTHUMG00000164097 uc061qpk.1 "BX474356|DB142079" NR_102429 +HGNC:30093 OSGIN1 oxidative stress induced growth inhibitor 1 protein-coding gene gene with protein product Approved 16q23.3 16q23.3 "BDGI|OKL38" "bone marrow stromal cell-derived growth inhibitor|pregnancy induced growth inhibitor" 2006-10-05 2014-11-19 29948 ENSG00000140961 OTTHUMG00000137640 uc002fhb.5 AY258066 NM_013370 CCDS10939 Q9UJX0 "11459809|14570898" MGI:1919089 RGD:620679 OSGIN1 607975 +HGNC:1355 OSGIN2 oxidative stress induced growth inhibitor family member 2 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 hT41 C8orf1 chromosome 8 open reading frame 1 1998-08-06 2006-10-05 2006-10-05 2016-10-05 734 ENSG00000164823 OTTHUMG00000163811 uc003yeh.4 AF061326 NM_004337 "CCDS6248|CCDS47888" Q9Y236 9933573 MGI:2384798 RGD:1306323 OSGIN2 604598 +HGNC:8506 OSM oncostatin M protein-coding gene gene with protein product Approved 22q12.2 22q12.2 MGC20461 Interleukin 6 cytokine family 1264 1992-07-09 2014-11-18 5008 ENSG00000099985 OTTHUMG00000150913 uc003ahb.4 AF129855 NM_020530 "CCDS13873|CCDS82706" P13725 1717982 MGI:104749 RGD:1585012 OSM 165095 +HGNC:8507 OSMR oncostatin M receptor protein-coding gene gene with protein product Approved 5p13.1 05p13.1 OSMRB Fibronectin type III domain containing 555 1999-02-17 2016-10-05 9180 ENSG00000145623 OTTHUMG00000090811 uc003jln.2 U60805 NM_003999 "CCDS3928|CCDS54847" Q99650 8999038 MGI:1330819 RGD:1302983 OSMR 601743 140041 objectId:1714 +HGNC:50296 OSMR-AS1 OSMR antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 5p13.1 05p13.1 2014-04-03 2014-04-03 101929768 ENSG00000249740 OTTHUMG00000162040 NR_109951 +HGNC:8111 OSR1 odd-skipped related transciption factor 1 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 ODD "odd-skipped (Drosophila) homolog|odd-skipped related 1 (Drosophila)" Zinc fingers C2H2-type 28 1995-11-14 2004-11-26 2013-10-17 2014-11-19 130497 ENSG00000143867 OTTHUMG00000088793 uc002rdc.4 BC025712 NM_145260 CCDS1694 Q8TAX0 "2120051|12119563" MGI:1344424 RGD:1311807 OSR1 608891 +HGNC:15830 OSR2 odd-skipped related transciption factor 2 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 FLJ90037 odd-skipped related 2 (Drosophila) Zinc fingers C2H2-type 28 2004-11-22 2013-10-17 2013-10-17 116039 ENSG00000164920 OTTHUMG00000164640 uc003yir.5 AY038072 NM_053001 "CCDS47901|CCDS47902|CCDS69520" Q8N2R0 MGI:1930813 RGD:1305812 OSR2 611297 +HGNC:32483 OST4 oligosaccharyltransferase complex subunit 4, non-catalytic protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "oligosaccharyltransferase 4 homolog (S. cerevisiae)|oligosaccharyltransferase complex subunit 4 (non-catalytic)" Oligosaccharyltransferase complex subunits 445 2010-04-08 2016-03-01 2016-03-01 100128731 ENSG00000228474 OTTHUMG00000151990 uc002rig.4 BC105283 NM_001134693 CCDS58703 P0C6T2 "16317064|23606741" MGI:1914945 RGD:2300150 OST4 +HGNC:24448 OSTC oligosaccharyltransferase complex non-catalytic subunit protein-coding gene gene with protein product Approved 4q25 04q25 DC2 DC2 protein oligosaccharyltransferase complex subunit Oligosaccharyltransferase complex subunits 445 2008-12-16 2016-07-05 2016-07-05 58505 ENSG00000198856 OTTHUMG00000161031 uc003hzb.3 AF201937 NM_021227 "CCDS3681|CCDS58921|CCDS75177" Q9NRP0 15835887 MGI:1913607 RGD:1560708 OSTC +HGNC:30530 OSTCP1 oligosaccharyltransferase complex subunit pseudogene 1 pseudogene pseudogene Approved 6q25.3 06q25.3 DC2L DC2 protein-like OSTCL oligosaccharyltransferase complex subunit-like 2008-12-16 2011-09-02 2011-09-02 2014-11-18 202459 ENSG00000243775 OTTHUMG00000015919 BC024224 NM_145303 12477932 PGOHUM00000243434 +HGNC:42864 OSTCP2 oligosaccharyltransferase complex subunit pseudogene 2 pseudogene pseudogene Approved 1p36.11 01p36.11 2011-09-02 2011-09-02 646567 ENSG00000225294 OTTHUMG00000004276 PGOHUM00000243945 +HGNC:42865 OSTCP3 oligosaccharyltransferase complex subunit pseudogene 3 pseudogene pseudogene Approved 19q13.42 19q13.42 2011-09-02 2014-11-18 646557 NG_030060 PGOHUM00000234776 +HGNC:42866 OSTCP4 oligosaccharyltransferase complex subunit pseudogene 4 pseudogene pseudogene Approved 4q25 04q25 2011-09-02 2011-09-02 645264 ENSG00000220924 OTTHUMG00000161564 NG_030224 PGOHUM00000246036 +HGNC:42867 OSTCP5 oligosaccharyltransferase complex subunit pseudogene 5 pseudogene pseudogene Approved 1p34.1 01p34.1 2011-09-02 2014-11-19 100874386 ENSG00000234315 OTTHUMG00000008966 NG_032532 PGOHUM00000244001 +HGNC:42868 OSTCP6 oligosaccharyltransferase complex subunit pseudogene 6 pseudogene pseudogene Approved 6p12.1 06p12.1 2012-02-24 2014-11-18 100874387 ENSG00000219790 OTTHUMG00000014911 NG_032533 PGOHUM00000243213 +HGNC:42870 OSTCP7 oligosaccharyltransferase complex subunit pseudogene 7 pseudogene pseudogene Approved 17q12 17q12 2011-09-02 2011-09-02 100874391 NG_032535 +HGNC:42869 OSTCP8 oligosaccharyltransferase complex subunit pseudogene 8 pseudogene pseudogene Approved 9p13.3 09p13.3 2012-02-24 2014-11-19 100874388 ENSG00000226801 OTTHUMG00000000416 NG_032534 PGOHUM00000236016 +HGNC:8510 OSTF1 osteoclast stimulating factor 1 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "SH3P2|OSF|bA235O14.1" Ankyrin repeat domain containing 403 1999-12-01 2016-10-05 26578 ENSG00000134996 OTTHUMG00000020033 uc004ajv.5 U63717 NM_012383 CCDS6651 Q92882 10092216 MGI:700012 RGD:628849 OSTF1 610180 +HGNC:31439 OSTF1P1 osteoclast stimulating factor 1 pseudogene 1 pseudogene pseudogene Approved 12q24.1-q24.2 12q24.1-q24.2 OSTF1P osteoclast stimulating factor 1 pseudogene 2004-05-10 2010-03-04 2010-03-04 2014-11-19 386654 ENSG00000258244 OTTHUMG00000169591 NG_003109 PGOHUM00000239937 +HGNC:21652 OSTM1 osteopetrosis associated transmembrane protein 1 protein-coding gene gene with protein product Approved 6q21 06q21 "HSPC019|GL" CLCN7 accessory beta subunit 2003-10-06 2016-05-06 28962 ENSG00000081087 OTTHUMG00000015317 uc003psd.3 AF533891 NM_014028 CCDS5062 Q86WC4 "12627228|21527911" MGI:2655574 RGD:1564976 OSTM1 607649 124029 +HGNC:43666 OSTM1-AS1 OSTM1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q21 06q21 OSTM1 antisense RNA 1 (non-protein coding) 2012-01-26 2012-08-15 2012-10-12 100287366 ENSG00000225174 OTTHUMG00000015320 uc003psf.2 BC031282 XR_001744279 +HGNC:29961 OSTN osteocrin protein-coding gene gene with protein product Approved 3q28 03q28 2004-01-22 2016-10-05 344901 ENSG00000188729 OTTHUMG00000156190 uc011bsn.2 AY398681 NM_198184 CCDS3299 P61366 14523025 MGI:2677164 RGD:1303110 OSTN 610280 +HGNC:41250 OSTN-AS1 OSTN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q28 03q28 OSTN antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 106480738 ENSG00000233308 OTTHUMG00000156189 uc062rko.1 NR_133663 +HGNC:8512 OTC ornithine carbamoyltransferase protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 2001-06-22 2016-10-05 5009 ENSG00000036473 OTTHUMG00000022727 uc004def.5 K02100 XM_017029556 CCDS14247 P00480 MGI:97448 RGD:3236 "OTC - Ornithine transcarbamylase deficiency|http://www.LOVD.nl/OTC|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=OTC|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=OTC" OTC 300461 124033 2.1.3.3 +HGNC:16378 OTOA otoancorin protein-coding gene gene with protein product Approved 16p12.2 16p12.2 CT108 cancer/testis antigen 108 DFNB22 deafness, autosomal recessive 22 2002-07-05 2002-07-05 2014-11-18 146183 ENSG00000155719 OTTHUMG00000090721 uc002djh.3 AK057335 XM_017022950 "CCDS10600|CCDS32403|CCDS53994" Q7RTW8 "11972037|19088187" MGI:2149209 RGD:1562741 OTOA 607038 166800 +HGNC:8515 OTOF otoferlin protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "FER1L2|DFNB6" fer-1-like family member 2 DFNB9 Ferlin family 828 1999-03-31 2016-10-05 9381 ENSG00000115155 OTTHUMG00000096977 uc002rhk.3 AF107403 XM_017005338 "CCDS1724|CCDS1725|CCDS1726|CCDS46241|CCDS74497" Q9HC10 "10192385|18381613" MGI:1891247 RGD:620646 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=OTOF" OTOF 603681 124035 +HGNC:8516 OTOG otogelin protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "mlemp|OTGN|FLJ46346" 1998-05-05 2016-10-05 340990 ENSG00000188162 OTTHUMG00000149905 uc057znr.1 AK128214 NM_001277269 "CCDS59225|CCDS76390" Q6ZRI0 9405633 MGI:1202064 RGD:1306610 OTOG 604487 317554 +HGNC:26901 OTOGL otogelin like protein-coding gene gene with protein product Approved 12q21.31 12q21.31 FLJ90579 C12orf64 "chromosome 12 open reading frame 64|otogelin-like" 2007-02-02 2011-02-11 2016-03-10 2016-03-10 283310 ENSG00000165899 OTTHUMG00000150509 uc001szd.3 AK096852 NM_173591 Q3ZCN5 MGI:3647600 RGD:1589018 OTOGL 614925 317567 +HGNC:34071 OTOL1 otolin 1 protein-coding gene gene with protein product Approved 3q26.1 03q26.1 C1QTNF15 C1q and tumor necrosis factor related protein 15 otolin 1 homolog (zebrafish) 2010-08-18 2011-05-19 2014-11-19 131149 ENSG00000182447 uc011bpb.2 NM_001080440 CCDS46948 A6NHN0 "17544811|15905077" MGI:2685260 RGD:1562064 OTOL1 +HGNC:19656 OTOP1 otopetrin 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 2004-01-19 2016-10-05 133060 ENSG00000163982 OTTHUMG00000090301 uc003ghp.2 BK000653 NM_177998 CCDS3372 Q7RTM1 12651873 MGI:2388363 RGD:631389 OTOP1 607806 +HGNC:19657 OTOP2 otopetrin 2 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 2004-01-19 2006-09-20 92736 ENSG00000183034 OTTHUMG00000179215 uc010wrp.2 BK000567 NM_178160 CCDS11708 Q7RTS6 12651873 MGI:2388365 RGD:1304830 OTOP2 607827 +HGNC:19658 OTOP3 otopetrin 3 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 2004-01-19 2015-08-25 347741 ENSG00000182938 OTTHUMG00000179216 uc010wrr.4 BK000568 NM_178233 CCDS11709 Q7RTS5 12651873 MGI:1916852 RGD:1306663 OTOP3 607828 +HGNC:8517 OTOR otoraplin protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "MIAL|MIAL1|FDP" MIA family 1300 2000-08-31 2016-10-05 56914 ENSG00000125879 OTTHUMG00000031931 uc002wpj.5 AF233261 XM_017027959 CCDS13124 Q9NRC9 10873378 MGI:1888678 RGD:1305253 OTOR 606067 +HGNC:22644 OTOS otospiralin protein-coding gene gene with protein product Approved 2q37.3 02q37.3 OTOSP 2004-02-04 2014-11-19 150677 ENSG00000178602 OTTHUMG00000133351 uc061ugy.1 NM_148961 CCDS2533 Q8NHW6 12687421 MGI:2672814 RGD:708465 OTOS 607877 +HGNC:8518 OTP orthopedia homeobox protein-coding gene gene with protein product Approved 5q14.1 05q14.1 orthopedia homolog (Drosophila) PRD class homeoboxes and pseudogenes 521 1999-02-09 2007-02-15 2015-08-25 23440 ENSG00000171540 OTTHUMG00000102171 uc003kfg.4 NM_032109 CCDS4039 Q5XKR4 10458915 MGI:99835 RGD:727945 OTP 604529 8478 +HGNC:8519 OTSC1 otosclerosis 1 phenotype phenotype only Approved 15q25-q26 15q25-q26 OTS 1998-08-11 1998-08-11 5012 9425236 166800 +HGNC:8520 OTSC2 otosclerosis 2 phenotype phenotype only Approved 7q34-q36 07q34-q36 2000-06-29 2014-01-30 93999 "11170898|20182450" 605727 +HGNC:17831 OTSC3 otosclerosis 3 phenotype phenotype only Approved 6p22.3-p21.2 06p22.3-p21.2 2002-01-23 2008-05-15 170532 12114476 608244 +HGNC:19981 OTSC4 otosclerosis 4 phenotype phenotype only Approved 16q21-q23.2 16q21-q23.2 2002-12-18 2008-05-14 286751 16618911 611571 +HGNC:20238 OTSC5 otosclerosis 5 phenotype phenotype only Approved 3q22.1-q24 03q22.1-q24 2003-01-13 2004-09-17 317682 15173231 608787 +HGNC:20375 OTSC6 otosclerosis 6 phenotype phenotype only Approved reserved reserved 2003-01-30 2014-01-30 319090 +HGNC:31084 OTSC7 otosclerosis 7 phenotype phenotype only Approved 6q13-q16.1 06q13-q16.1 2004-01-29 2007-01-19 399516 17213839 611572 +HGNC:32939 OTSC8 otosclerosis 8 phenotype phenotype only Approved 9p13.1-q21.11 09p13.1-q21.11 2008-03-11 2011-02-10 100151644 18224337 612096 +HGNC:35457 OTSC9 otosclerosis 9 phenotype phenotype only Approved reserved reserved 2009-02-10 2014-01-30 +HGNC:38512 OTSC10 otosclerosis 10 phenotype phenotype only Approved 1q41-q44 01q41-q44 2010-05-27 2012-03-30 102723100 21470211 615589 +HGNC:23077 OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "FLJ20113|FLJ40710" OTU domain, ubiquitin aldehyde binding 1 OTU domain containing 669 2003-12-12 2014-02-24 2014-11-19 55611 ENSG00000167770 OTTHUMG00000167786 uc001nyf.2 AY177200 NM_017670 CCDS8055 Q96FW1 "12704427|19383985" MGI:2147616 RGD:1311329 OTUB1 608337 C65.001 +HGNC:20351 OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "FLJ21916|MGC3102" C14orf137 "chromosome 14 open reading frame 137|OTU domain, ubiquitin aldehyde binding 2" OTU domain containing 669 2003-01-28 2004-05-28 2014-02-24 2015-01-28 78990 ENSG00000089723 OTTHUMG00000171300 uc001yci.4 AF318378 XM_011537148 CCDS9917 Q96DC9 "12704427|19996094" MGI:1915399 RGD:1306688 OTUB2 608338 C65.002 +HGNC:27346 OTUD1 OTU deubiquitinase 1 protein-coding gene gene with protein product Approved 10p12.2 10p12.2 DUBA7 OTDC1 OTU domain containing 1 OTU domain containing 669 2004-05-27 2014-02-24 2016-10-05 220213 ENSG00000165312 OTTHUMG00000017819 uc001irr.3 AK096389 XM_166659 CCDS44366 Q5VV17 23827681 MGI:1918448 RGD:1563344 OTUD1 612022 C85.004 +HGNC:29038 OTUD3 OTU deubiquitinase 3 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "KIAA0459|DUBA4" OTU domain containing 3 OTU domain containing 669 2005-07-18 2014-02-24 2014-11-19 23252 ENSG00000169914 OTTHUMG00000002696 uc001bcs.5 AB007928 XM_005245792 CCDS41279 Q5T2D3 "9455484|23827681" MGI:1920412 RGD:1560468 OTUD3 611758 +HGNC:24949 OTUD4 OTU deubiquitinase 4 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "HSHIN1|KIAA1046|DUBA6" OTU domain containing 4 OTU domain containing 669 2005-09-28 2014-02-24 2015-08-25 54726 ENSG00000164164 OTTHUMG00000161480 uc062zzb.1 NM_017493 "CCDS3764|CCDS47139" Q01804 "1475186|12727813|19996094" MGI:1098801 RGD:1305606 OTUD4 611744 +HGNC:33912 OTUD4P1 OTUD4 pseudogene 1 pseudogene pseudogene Approved 12p13.32 12p13.32 HIN1L 2014-02-24 2014-11-19 360227 ENSG00000118976 OTTHUMG00000168119 NG_005318 PGOHUM00000258652 +HGNC:25402 OTUD5 OTU deubiquitinase 5 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "DKFZp761A052|DUBA" OTU domain containing 5 OTU domain containing 669 2005-09-28 2014-02-24 2015-08-25 55593 ENSG00000068308 OTTHUMG00000024130 uc004dlu.4 NM_017602 "CCDS14313|CCDS48104|CCDS48105" Q96G74 24143256 MGI:1859615 RGD:1563027 OTUD5 300713 C85.001 +HGNC:32312 OTUD6A OTU deubiquitinase 6A protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "FLJ25831|HSHIN6|DUBA2" OTU domain containing 6A OTU domain containing 669 2005-09-28 2014-02-24 2015-09-03 139562 ENSG00000189401 OTTHUMG00000159996 uc004dxu.1 AK098697 NM_207320 CCDS14395 Q7L8S5 23827681 MGI:3644685 RGD:1560855 OTUD6A 300714 +HGNC:24281 OTUD6B OTU domain containing 6B protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "CGI-77|DUBA5" OTU domain containing 669 2005-09-28 2014-11-18 51633 ENSG00000155100 OTTHUMG00000150758 uc003yeu.4 NM_016023 "CCDS6253|CCDS69513" Q8N6M0 MGI:1919451 RGD:1310024 OTUD6B 612021 +HGNC:50466 OTUD6B-AS1 OTUD6B antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 8q21.3 08q21.3 GS1-251I9.4 2014-04-30 2014-04-30 100506365 ENSG00000253738 OTTHUMG00000164022 NR_110439 +HGNC:20718 OTUD7A OTU deubiquitinase 7A protein-coding gene gene with protein product Approved 15q13.3 15q13.3 CEZANNE2 "C15orf16|OTUD7" "chromosome 15 open reading frame 16|OTU domain containing 7|OTU domain containing 7A" OTU domain containing 669 2003-05-12 2006-07-07 2014-02-24 2016-10-05 161725 ENSG00000169918 OTTHUMG00000129275 uc001zfq.4 AJ430383 NM_130901 CCDS10026 Q8TE49 23827681 MGI:2158505 RGD:1563721 OTUD7A 612024 C64.002 +HGNC:16683 OTUD7B OTU deubiquitinase 7B protein-coding gene gene with protein product Approved 1q21.2 01q21.2 CEZANNE ZA20D1 "zinc finger, A20 domain containing 1|OTU domain containing 7B" OTU domain containing 669 2003-05-12 2006-07-07 2014-02-24 2015-09-03 56957 ENSG00000264522 OTTHUMG00000012291 uc001etn.5 AJ293573 NM_020205 CCDS72903 Q6GQQ9 "11463333|23827681" MGI:2654703 RGD:1308111 OTUD7B 611748 C64.001 +HGNC:25118 OTULIN OTU deubiquitinase with linear linkage specificity protein-coding gene gene with protein product Approved 5p15.2 05p15.2 FLJ34884 gumby FAM105B family with sequence similarity 105, member B OTU domain containing 669 2005-12-22 2014-03-11 2014-03-11 2015-08-25 90268 ENSG00000154124 OTTHUMG00000161762 NM_138348 CCDS43302 Q96BN8 "23708998|23746843" MGI:3577015 RGD:2324500 615712 C101.001 +HGNC:8521 OTX1 orthodenticle homeobox 1 protein-coding gene gene with protein product Approved 2p15 02p15 "orthodenticle (Drosophila) homolog 1|orthodenticle homolog 1 (Drosophila)" PRD class homeoboxes and pseudogenes 521 1994-02-08 2007-02-15 2015-08-25 5013 ENSG00000115507 OTTHUMG00000129454 uc021vim.2 NM_001199770 CCDS1873 P32242 7959790 MGI:97450 RGD:3237 OTX1 600036 8479 +HGNC:8522 OTX2 orthodenticle homeobox 2 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 orthodenticle homolog 2 (Drosophila) PRD class homeoboxes and pseudogenes 521 1994-02-08 2007-02-15 2016-10-12 5015 ENSG00000165588 OTTHUMG00000152338 uc010aou.5 AF298117 NM_021728. "CCDS9728|CCDS41960" P32243 7959790 MGI:97451 RGD:1305705 "LOVD|http://lsdb.hgu.mrc.ac.uk/home.php?select_db=OTX2|LRG_718|http://www.lrg-sequence.org/LRG/LRG_718" OTX2 600037 8480 124040 +HGNC:43906 OTX2-AS1 OTX2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 14q22.3 14q22.3 OTX2OS1 "OTX2 antisense RNA 1 (non-protein coding)|OTX2 antisense RNA 1" Long non-coding RNAs 788 2012-05-01 2012-10-17 2014-10-22 100309464 ENSG00000248550 OTTHUMG00000171304 uc001xcr.5 BC041486 NR_029385 15703187 Otx2os1 +HGNC:33281 OTX2P1 orthodenticle homeobox 2 pseudogene 1 pseudogene pseudogene Approved 9q21 09q21 OTX2P orthodenticle homeobox 2 pseudogene PRD class homeoboxes and pseudogenes 521 2007-02-15 2007-07-27 2007-07-27 2011-06-20 100033409 ENSG00000234644 OTTHUMG00000020037 NG_032194 8593 +HGNC:49422 OVAAL ovarian adenocarcinoma amplified long non-coding RNA non-coding RNA RNA, long non-coding Approved 1q25.3 01q25.3 "LINC01131|OVAL" "long intergenic non-protein coding RNA 1131|ovarian adenocarcinoma amplified lncRNA" Long non-coding RNAs 788 2013-11-19 2014-07-18 148756 ENSG00000236719 OTTHUMG00000035112 BC036830 NR_125716 24265805 +HGNC:24203 OVCA2 ovarian tumor suppressor candidate 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 candidate tumor suppressor in ovarian cancer 2 2009-08-13 2016-07-01 124641 ENSG00000262664 OTTHUMG00000132471 uc002ftx.4 AF321875 NM_080822 CCDS11015 Q8WZ82 "11979432|8616839|16368187" MGI:2179725 RGD:1564623 607896 3.1.2.- +HGNC:23080 OVCH1 ovochymase 1 protein-coding gene gene with protein product Approved 12p11.22 12p11.22 OVCH 2003-09-03 2016-10-05 341350 ENSG00000187950 OTTHUMG00000167741 uc001rix.2 BN000128 NM_183378 Q7RTY7 12838346 OVCH1 XS01-005 +HGNC:44484 OVCH1-AS1 OVCH1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p11.22 12p11.22 2013-05-30 2016-09-26 101055625 ENSG00000257599 OTTHUMG00000169323 NR_073170 +HGNC:29970 OVCH2 ovochymase 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 OVTN ovochymase 2 2005-02-24 2010-06-08 2015-09-03 341277 ENSG00000183378 OTTHUMG00000165418 uc031xev.2 BN000120 NM_198185 CCDS73251 Q7RTZ1 12838346 MGI:3045251 RGD:1564636 OVCH2 S01.320 +HGNC:8524 OVGP1 oviductal glycoprotein 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 CHIT5 oviductin MUC9 "mucin 9|oviductal glycoprotein 1, 120kDa" "Mucins|Chitinases" "648|816" 1996-06-12 2015-11-09 2015-11-09 5016 ENSG00000085465 OTTHUMG00000011746 uc001eba.4 U09550 NM_002557 CCDS834 Q12889 "7819450|9341614" MGI:106661 OVGP1 603578 +HGNC:8525 OVOL1 ovo like transcriptional repressor 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 HOVO1 "ovo (Drosophila) homolog-like 1|ovo-like 1(Drosophila)|ovo like zinc finger 1" "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 1997-07-11 2016-05-04 2016-10-05 5017 ENSG00000172818 OTTHUMG00000166600 uc001ofp.4 BC059408 NM_004561 CCDS8112 O14753 9383297 MGI:1330290 RGD:1306956 OVOL1 602313 +HGNC:49319 OVOL1-AS1 OVOL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q13.1 11q13.1 2013-10-17 2013-10-17 101927828 ENSG00000255120 OTTHUMG00000166597 AI458914 NR_108085 +HGNC:15804 OVOL2 ovo like zinc finger 2 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "bA504H3.3|HOVO2" ZNF339 "zinc finger protein 339|ovo-like 2 (Drosophila)" Zinc fingers C2H2-type 28 2001-09-17 2005-05-31 2016-01-18 2016-01-18 58495 ENSG00000125850 OTTHUMG00000031960 uc002wqi.1 AK022284 NM_021220 CCDS13132 Q9BRP0 MGI:1338039 RGD:1306130 OVOL2 616441 453713 +HGNC:14186 OVOL3 ovo like zinc finger 3 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 HOVO3 ovo-like 3 (Drosophila) 2011-12-02 2016-01-18 2016-01-18 728361 ENSG00000105261 OTTHUMG00000181748 uc031rkj.3 XM_001717165 CCDS82333 O00110 MGI:2388075 RGD:1583800 OVOL3 616442 +HGNC:8526 OXA1L OXA1L, mitochondrial inner membrane protein protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "MGC133129|OXA1" oxidase (cytochrome c) assembly 1-like 1995-09-20 2016-05-04 2016-05-04 5018 ENSG00000155463 OTTHUMG00000028691 uc058zij.1 NM_005015 CCDS9573 Q15070 "8586451|19349278" MGI:1916339 RGD:1585024 OXA1L 601066 +HGNC:8527 OXCT1 3-oxoacid CoA-transferase 1 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 SCOT OXCT "3-oxoacid CoA transferase|3-oxoacid CoA transferase 1" 1997-12-05 2004-05-12 2015-11-11 2016-10-05 5019 ENSG00000083720 OTTHUMG00000094783 uc003jmn.4 U62961 NM_000436 CCDS3937 P55809 8751852 MGI:1914291 RGD:1584008 OXCT1 601424 124042 2.8.3.5 +HGNC:40423 OXCT1-AS1 OXCT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p13.1 05p13.1 OXCT1 antisense RNA 1 (non-protein coding) 2011-12-01 2012-08-15 2014-11-19 100874002 ENSG00000248668 OTTHUMG00000162087 uc032usd.2 "DB470733|DB476656" NR_046635 +HGNC:18606 OXCT2 3-oxoacid CoA-transferase 2 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "FKSG25|FLJ00030|SCOT-T" 2002-05-02 2015-11-11 2016-10-05 64064 ENSG00000198754 OTTHUMG00000009249 uc001ceb.2 AB050193 NM_022120 CCDS445 Q9BYC2 "11214971|11756565" RGD:1306953 OXCT2 610289 2.8.3.5 +HGNC:21627 OXCT2P1 3-oxoacid CoA-transferase 2 pseudogene 1 pseudogene pseudogene Approved 1p34.3 01p34.3 OXCT2P 3-oxoacid CoA transferase 2 pseudogene 2003-07-14 2010-03-04 2015-11-11 2016-10-05 192217 ENSG00000237624 OTTHUMG00000009250 NG_001331 PGOHUM00000244680 +HGNC:24884 OXER1 oxoeicosanoid receptor 1 protein-coding gene gene with protein product Approved 2p21 02p21 "GPCR|TG1019|GPR170" "5-oxo-ETE acid G-protein-coupled receptor 1|OXE receptor" Leukotriene receptors 204 2004-04-02 2016-05-26 2016-10-05 165140 ENSG00000162881 OTTHUMG00000128643 uc002rss.4 AB083055 NM_148962 CCDS1810 Q8TDS5 "12065583|15001665" OXER1 objectId:271 +HGNC:4531 OXGR1 oxoglutarate receptor 1 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "P2RY15|P2Y15|aKGR" "2-oxoglutarate receptor 1|alpha-ketoglutarate receptor 1" "GPR99|GPR80" "G protein-coupled receptor 80|oxoglutarate (alpha-ketoglutarate) receptor 1" Oxoglutarate receptor 935 2000-01-20 2004-07-09 2016-02-01 2016-10-05 27199 ENSG00000165621 OTTHUMG00000017236 uc001vmx.1 AF411109 NM_080818 CCDS9482 Q96P68 "15141213|12098360" MGI:2685145 RGD:1303155 OXGR1 606922 objectId:162 +HGNC:27901 OXLD1 oxidoreductase like domain containing 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 MGC104712 C17orf90 "chromosome 17 open reading frame 90|oxidoreductase-like domain containing 1" 2007-11-19 2012-07-20 2016-04-01 2016-04-01 339229 ENSG00000204237 OTTHUMG00000178063 uc002kba.3 NM_001039842 "CCDS32766|CCDS77132" Q5BKU9 MGI:1913681 RGD:1590060 +HGNC:25128 OXNAD1 oxidoreductase NAD binding domain containing 1 protein-coding gene gene with protein product Approved 3p25.1-p24.3 03p25.1-p24.3 MGC15763 oxidoreductase NAD-binding domain containing 1 2005-12-22 2016-04-04 2016-10-11 92106 ENSG00000154814 OTTHUMG00000129867 uc003cax.4 AL832787 NM_138381 CCDS2630 Q96HP4 12477932 MGI:1916953 RGD:1311534 OXNAD1 +HGNC:15822 OXR1 oxidation resistance 1 protein-coding gene gene with protein product Approved 8q23.1 08q23.1 TLDC3 TBC/LysM-associated domain containing 3 2001-06-14 2016-10-05 55074 ENSG00000164830 OTTHUMG00000167682 uc011lhu.3 AF309387 NM_181354 "CCDS6304|CCDS47909|CCDS56547|CCDS56548|CCDS56549|CCDS56550" Q8N573 11114193 MGI:2179326 RGD:621857 OXR1 605609 +HGNC:26063 OXSM 3-oxoacyl-ACP synthase, mitochondrial protein-coding gene gene with protein product Approved 3p24.2 03p24.2 "KS|FLJ20604|FASN2D" beta-ketoacyl synthase 2005-12-21 2014-11-19 54995 ENSG00000151093 OTTHUMG00000130477 uc003cdn.4 BC008202 NM_017897 "CCDS2643|CCDS46780" Q9NWU1 12477932 MGI:1918397 RGD:1311092 OXSM 610324 2.3.1.41 +HGNC:8508 OXSR1 oxidative stress responsive 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 KIAA1101 OSR1 oxidative-stress responsive 1 1999-05-06 2004-11-26 2013-05-17 2014-11-19 9943 ENSG00000172939 OTTHUMG00000131084 uc003chy.4 AB017642 NM_005109 CCDS2675 O95747 10083736 MGI:1917378 RGD:1310466 OXSR1 604046 objectId:2132 +HGNC:8528 OXT oxytocin/neurophysin I prepropeptide protein-coding gene gene with protein product Approved 20p13 20p13 "OXT-NPI|OT-NPI" "oxytocin|neurophysin I" OT "oxytocin, prepro- (neurophysin I)|oxytocin, prepropeptide" Endogenous ligands 542 1986-01-01 2012-10-23 2015-09-03 5020 ENSG00000101405 OTTHUMG00000031724 uc002wht.2 NM_000915 CCDS13044 P01178 MGI:97453 RGD:3238 OXT 167050 +HGNC:8529 OXTR oxytocin receptor protein-coding gene gene with protein product Approved 3p25.3 03p25.3 Arginine vasopressin and oxytocin receptors 259 1992-10-16 2016-10-05 5021 ENSG00000180914 OTTHUMG00000090537 uc003brc.4 XM_011533762 CCDS2570 P30559 1313946 MGI:109147 RGD:3239 OXTR 167055 objectId:369 +HGNC:8531 P1 P one antigen (P blood group) phenotype phenotype only Approved 22q11.2-qter 22q11.2-qter Blood group antigens 454 2006-02-23 2014-11-19 +HGNC:8533 P2RX1 purinergic receptor P2X 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 P2X1 purinergic receptor P2X, ligand-gated ion channel, 1 Purinergic receptors P2X 214 1997-01-16 2016-02-05 2016-02-05 5023 ENSG00000108405 OTTHUMG00000177673 uc002fww.4 X83688 NM_002558 CCDS11040 P51575 8834001 MGI:1098235 RGD:3240 P2RX1 600845 objectId:478 +HGNC:15459 P2RX2 purinergic receptor P2X 2 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 P2X2 DFNA41 "deafness, autosomal dominant 41|purinergic receptor P2X, ligand-gated ion channel, 2" Purinergic receptors P2X 214 2001-03-30 2016-02-05 2016-02-05 22953 ENSG00000187848 OTTHUMG00000168018 uc001uki.3 AF109387 XM_005266154 "CCDS31930|CCDS31931|CCDS31932|CCDS31933|CCDS31934|CCDS31935|CCDS61286|CCDS73548" Q9UBL9 "10570044|7523952|23345450" MGI:2665170 RGD:620251 P2RX2 600844 330683 objectId:479 +HGNC:8534 P2RX3 purinergic receptor P2X 3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 P2X3 purinergic receptor P2X, ligand-gated ion channel, 3 Purinergic receptors P2X 214 1997-10-09 2016-02-05 2016-10-05 5024 ENSG00000109991 OTTHUMG00000167025 uc001nju.4 Y07683 NM_002559 CCDS7953 P56373 9221902 MGI:1097160 RGD:620253 P2RX3 600843 objectId:480 +HGNC:8535 P2RX4 purinergic receptor P2X 4 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 P2X4 purinergic receptor P2X, ligand-gated ion channel, 4 Purinergic receptors P2X 214 1997-10-09 2016-02-05 2016-10-05 5025 ENSG00000135124 OTTHUMG00000169155 uc001tzr.4 Y07684 NM_175567 "CCDS9214|CCDS58282" Q99571 9016352 MGI:1338859 RGD:62073 P2RX4 600846 objectId:481 +HGNC:8536 P2RX5 purinergic receptor P2X 5 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "P2X5|LRH-1" purinergic receptor P2X, ligand-gated ion channel, 5 "Purinergic receptors P2X|Minor histocompatibility antigens" "214|870" 1998-05-14 2016-02-05 2016-10-05 5026 ENSG00000083454 OTTHUMG00000090700 uc002fwi.4 AF016709 "NM_002561|NM_175080|NM_175081" "CCDS11034|CCDS11035|CCDS56014|CCDS56015" Q93086 9414125 MGI:2137026 RGD:620256 P2RX5 602836 objectId:482 +HGNC:49191 P2RX5-TAX1BP3 P2RX5-TAX1BP3 readthrough (NMD candidate) other readthrough Approved 17p13.2 17p13.2 2013-09-25 2013-09-25 100533970 ENSG00000257950 OTTHUMG00000169623 NR_037928 +HGNC:8538 P2RX6 purinergic receptor P2X 6 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "P2XM|MGC129625|P2X6" P2RXL1 "purinergic receptor P2X-like 1, orphan receptor|purinergic receptor P2X, ligand-gated ion channel, 6" Purinergic receptors P2X 214 1999-02-24 2008-03-28 2016-02-05 2016-02-05 9127 ENSG00000099957 OTTHUMG00000150689 uc010gsu.2 NM_005446 "CCDS13788|CCDS54504" O15547 "9242461|10591208|8786426" MGI:1337113 RGD:3243 P2RX6 608077 objectId:483 +HGNC:34076 P2RX6P purinergic receptor P2X 6 pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 purinergic receptor P2X, ligand-gated ion channel, 6 pseudogene 2008-04-16 2016-02-05 2016-02-05 440799 ENSG00000206145 OTTHUMG00000150898 NR_002829 +HGNC:8537 P2RX7 purinergic receptor P2X 7 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "P2X7|MGC20089" purinergic receptor P2X, ligand-gated ion channel, 7 Purinergic receptors P2X 214 1997-10-09 2016-02-05 2016-10-05 5027 ENSG00000089041 OTTHUMG00000169153 uc001tzm.4 Y09561 NM_002562 CCDS9213 Q99572 "9038151|9826911" MGI:1339957 RGD:3241 P2RX7 602566 objectId:484 +HGNC:8539 P2RY1 purinergic receptor P2Y1 protein-coding gene gene with protein product Approved 3q25.2 03q25.2 P2Y1 purinergic receptor P2Y, G-protein coupled, 1 Purinergic receptors P2Y 213 1995-10-20 2016-02-05 2016-10-12 5028 ENSG00000169860 OTTHUMG00000159694 uc003ezq.4 U42029 NM_002563 CCDS3169 P47900 8579591 MGI:105049 RGD:3242 LRG_635|http://www.lrg-sequence.org/LRG/LRG_635 P2RY1 601167 objectId:323 +HGNC:8541 P2RY2 purinergic receptor P2Y2 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 P2U purinergic receptor P2Y, G-protein coupled, 2 Purinergic receptors P2Y 213 1995-10-20 2016-02-05 2016-02-05 5029 ENSG00000175591 OTTHUMG00000167966 uc001otk.5 U07225 NM_176072 CCDS8219 P41231 "8159738|9286708" MGI:105107 RGD:62088 P2RY2 600041 objectId:324 +HGNC:8542 P2RY4 pyrimidinergic receptor P2Y4 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "NRU|P2Y4|UNR|P2P" pyrimidinergic receptor P2Y, G-protein coupled, 4 Purinergic receptors P2Y 213 1997-01-14 2016-02-05 2016-10-05 5030 ENSG00000186912 OTTHUMG00000021769 uc004dxz.2 X91852 NM_002565 CCDS14398 P51582 8537336 MGI:1926594 RGD:61798 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=P2RY4 P2RY4 300038 objectId:325 +HGNC:8543 P2RY6 pyrimidinergic receptor P2Y6 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 P2Y6 pyrimidinergic receptor P2Y, G-protein coupled, 6 Purinergic receptors P2Y 213 1997-01-16 2016-02-05 2016-02-05 5031 ENSG00000171631 OTTHUMG00000167969 uc031qcn.2 XM_011545076 CCDS8220 Q15077 8670200 MGI:2673874 RGD:620269 P2RY6 602451 objectId:326 +HGNC:15524 P2RY8 purinergic receptor P2Y8 protein-coding gene gene with protein product Approved Xp22.33 and Yp11.3 Xp22.33 and Yp11.3 P2Y8 purinergic receptor P2Y, G-protein coupled, 8 "Purinergic receptors P2Y|Pseudoautosomal region 1" "213|715" 2001-06-25 2016-02-05 2016-02-05 286530 ENSG00000182162 OTTHUMG00000021060 uc004fpm.3 AA804531 NM_178129 CCDS14115 Q86VZ1 11004484 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=P2RY8 P2RY8 300525 objectId:164 +HGNC:19906 P2RY10 purinergic receptor P2Y10 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 P2Y10 purinergic receptor P2Y, G-protein coupled, 10 Purinergic receptors P2Y 213 2003-01-28 2016-02-05 2016-02-05 27334 ENSG00000078589 OTTHUMG00000021896 uc004edf.4 AF000545 NM_014499 CCDS14442 O00398 "11004484|9755289" MGI:1926076 RGD:1561912 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=P2RY10 P2RY10 300529 objectId:165 +HGNC:19063 P2RY10P1 purinergic receptor P2Y10 pseudogene 1 pseudogene pseudogene Approved Xq21.1 Xq21.1 "GPR121P|P2Y10P1" purinergic receptor P2Y, G-protein coupled, 10 pseudogene 1 2006-02-13 2016-02-05 2016-02-05 654813 +HGNC:32924 P2RY10P2 purinergic receptor P2Y10 pseudogene 2 pseudogene pseudogene Approved Xq21.1 Xq21.1 purinergic receptor P2Y, G-protein coupled, 10 pseudogene 2 2006-05-26 2016-02-05 2016-02-05 449518 ENSG00000232168 OTTHUMG00000021897 NG_004704 PGOHUM00000305168 +HGNC:8540 P2RY11 purinergic receptor P2Y11 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 P2Y11 purinergic receptor P2Y, G-protein coupled, 11 Purinergic receptors P2Y 213 1998-07-20 2016-02-05 2016-02-05 5032 ENSG00000244165 OTTHUMG00000150166 uc002mnc.4 AF030335 NM_002566 CCDS12226 Q96G91 9405388 RGD:7666983 P2RY11 602697 371321 objectId:327 +HGNC:18124 P2RY12 purinergic receptor P2Y12 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "P2Y12|SP1999|HORK3" purinergic receptor P2Y, G-protein coupled, 12 Purinergic receptors P2Y 213 2002-12-10 2016-02-05 2016-10-12 64805 ENSG00000169313 OTTHUMG00000159863 uc003eyx.3 AJ320495 XM_017007069 CCDS3159 Q9H244 "11502873|11104774" MGI:1918089 RGD:621681 LRG_569|http://www.lrg-sequence.org/LRG/LRG_569 P2RY12 600515 124046 objectId:328 +HGNC:4537 P2RY13 purinergic receptor P2Y13 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "FKSG77|P2Y13" "GPR94|GPR86" "G protein-coupled receptor 86|purinergic receptor P2Y, G-protein coupled, 13" Purinergic receptors P2Y 213 2000-05-23 2004-07-14 2016-02-05 2016-10-05 53829 ENSG00000181631 OTTHUMG00000155745 uc003eyv.3 AF295368 NM_023914 CCDS3158 Q9BPV8 "11273702|11574155" MGI:1921441 RGD:1302941 P2RY13 606380 objectId:329 +HGNC:16442 P2RY14 purinergic receptor P2Y14 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 KIAA0001 GPR105 "G protein-coupled receptor 105|purinergic receptor P2Y, G-protein coupled, 14" Purinergic receptors P2Y 213 2001-09-27 2004-07-14 2016-02-05 2016-10-05 9934 ENSG00000174944 OTTHUMG00000159859 uc003eys.2 D13626 NM_014879 CCDS3156 Q15391 MGI:2155705 RGD:70912 P2RY14 610116 objectId:330 +HGNC:19316 P3H1 prolyl 3-hydroxylase 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "GROS1|LEPRECAN|MGC117314" "growth suppressor 1|procollagen-proline 3-dioxygenase" LEPRE1 leucine proline-enriched proteoglycan (leprecan) 1 2002-10-03 2014-12-12 2014-12-12 2016-10-12 64175 ENSG00000117385 OTTHUMG00000007525 AK027648 NM_022356 "CCDS472|CCDS53307|CCDS57986" Q32P28 10951563 MGI:1888921 RGD:628823 "Osteogenesis Imperfecta Variant Database|https://oi.gene.le.ac.uk/home.php?select_db=LEPRE1|LRG_5|http://www.lrg-sequence.org/LRG/LRG_5" 610339 138843 1.14.11.7 +HGNC:19317 P3H2 prolyl 3-hydroxylase 2 protein-coding gene gene with protein product Approved 3q28 03q28 "FLJ10718|MLAT4" procollagen-proline 3-dioxygenase 2 LEPREL1 leprecan-like 1 2004-05-12 2014-12-12 2014-12-12 2016-10-05 55214 ENSG00000090530 OTTHUMG00000156312 NM_018192 "CCDS3294|CCDS46981" Q8IVL5 "15063763|21885030" MGI:2146663 RGD:1304568 610341 289488 1.14.11.7 +HGNC:40886 P3H2-AS1 P3H2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q28 03q28 LEPREL1-AS1 LEPREL1 antisense RNA 1 (non-protein coding) 2011-07-28 2014-12-12 2014-12-12 2014-12-12 101929152 ENSG00000225764 OTTHUMG00000156311 NR_126419 +HGNC:19318 P3H3 prolyl 3-hydroxylase 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "GRCB|HSU47926" procollagen-proline 3-dioxygenase LEPREL2 leprecan-like 2 2004-05-12 2014-12-12 2014-12-12 2015-12-04 10536 ENSG00000110811 OTTHUMG00000168516 U47926 NM_014262 CCDS61027 Q8IVL6 15063763 MGI:1315208 RGD:1305699 610342 1.14.11.7 +HGNC:16946 P3H4 prolyl 3-hydroxylase family member 4 (non-enzymatic) protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "SC65|NO55" LEPREL4 "nucleolar autoantigen (55kD)|rat synaptonemal complex protein|leprecan-like 4" 2010-09-01 2014-12-15 2014-12-15 2016-10-05 10609 ENSG00000141696 OTTHUMG00000133501 BC001047 XM_006721640 CCDS11408 Q92791 8862517 MGI:1913430 RGD:620767 +HGNC:8546 P4HA1 prolyl 4-hydroxylase subunit alpha 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 C-P4Halpha(I) collagen prolyl 4-hydroxylase alpha(I) P4HA "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide I|prolyl 4-hydroxylase, alpha polypeptide I" 1999-02-23 2016-01-27 2016-01-27 5033 ENSG00000122884 OTTHUMG00000018449 uc057tzf.1 NM_000917 "CCDS7320|CCDS41537|CCDS44432" P13674 2556027 MGI:97463 RGD:621000 P4HA1 176710 1.14.11.2 +HGNC:8547 P4HA2 prolyl 4-hydroxylase subunit alpha 2 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 C-P4Halpha(II) "4-PH alpha 2|collagen prolyl 4-hydroxylase alpha(II)" "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide II|prolyl 4-hydroxylase, alpha polypeptide II" 1999-02-23 2016-01-27 2016-10-05 8974 ENSG00000072682 OTTHUMG00000059647 uc063gtw.1 U90441 NM_004199 "CCDS4151|CCDS34230" O15460 "9211872|9149945" MGI:894286 RGD:1309673 P4HA2 600608 1.14.11.2 +HGNC:43560 P4HA2-AS1 P4HA2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q31.1 05q31.1 P4HA2 antisense RNA 1 (non-protein coding) 2011-11-07 2012-08-15 2012-10-12 100861518 ENSG00000237714 OTTHUMG00000059643 uc032vkt.2 BG772701 NR_047470 +HGNC:30135 P4HA3 prolyl 4-hydroxylase subunit alpha 3 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 C-P4Halpha(III) collagen prolyl 4-hydroxylase alpha(III) "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III|prolyl 4-hydroxylase, alpha polypeptide III" 2004-05-12 2016-01-27 2016-01-27 283208 ENSG00000149380 OTTHUMG00000165254 uc001ouz.5 AY327887 NM_182904 "CCDS8230|CCDS73347" Q7Z4N8 14500733 MGI:2444049 RGD:735150 P4HA3 608987 +HGNC:8548 P4HB prolyl 4-hydroxylase subunit beta protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "PDIA1|PROHB|DSI|GIT|PDI|PO4HB|P4Hbeta" "protein disulfide isomerase-associated 1|protein disulfide isomerase family A, member 1|collagen prolyl 4-hydroxylase beta" "PO4DB|ERBA2L" "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase; thyroid hormone binding protein p55)|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide (protein disulfide isomerase-associated 1)|procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide|prolyl 4-hydroxylase, beta polypeptide" Protein disulfide isomerases 692 1986-01-01 2016-01-27 2016-10-05 5034 ENSG00000185624 OTTHUMG00000150269 uc002kbn.2 J02783 NM_000918 CCDS11787 P07237 8111381 MGI:97464 RGD:3244 P4HB 176790 426000 "1.14.11.2|5.3.4.1" +HGNC:28858 P4HTM prolyl 4-hydroxylase, transmembrane protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "P4H-TM|PHD4|PH4|HIFPH4|FLJ20262|EGLN4|PH-4" "Prolyl hydroxlase domain-containing 4|hypoxia inducible factor prolyl 4 hydroxylase" prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum) 2008-12-08 2016-05-03 2016-05-03 54681 ENSG00000178467 OTTHUMG00000074057 uc003cvh.4 NM_177938 "CCDS2781|CCDS43089" Q9NXG6 "12163023|17726031" MGI:1921693 RGD:1311848 P4HTM 614584 +HGNC:8532 P200 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:8550 PA2G4 proliferation-associated 2G4 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "proliferation-associated 2G4, 38kD|proliferation-associated 2G4, 38kDa" 1996-10-26 2015-11-09 2015-11-09 5036 ENSG00000170515 OTTHUMG00000170173 uc001sjm.4 "U59435|BC007561" NM_006191 CCDS8902 Q9UQ80 9345902 MGI:894684 RGD:1302994 PA2G4 602145 M24.973 +HGNC:8551 PA2G4P1 proliferation-associated 2G4 pseudogene 1 pseudogene pseudogene Approved Xq24 Xq24 PA2G4P proliferation-associated 2G4 pseudogene 1996-10-26 2010-04-16 2010-04-16 2014-11-19 389884 ENSG00000237828 OTTHUMG00000022307 NG_005879 9345902 PGOHUM00000241521 +HGNC:16531 PA2G4P2 proliferation-associated 2G4 pseudogene 2 pseudogene pseudogene Approved 20p12.1 20p12.1 "bA102J14.2|PA2G4L5" 2001-09-17 2016-07-22 170533 ENSG00000235698 OTTHUMG00000031893 AL136460 NG_001046 9345902 PGOHUM00000297053 +HGNC:31731 PA2G4P3 proliferation-associated 2G4 pseudogene 3 pseudogene pseudogene Approved 18q11.2 18q11.2 "HsT2542|PA2G4L4" 2005-09-13 2014-11-19 619212 ENSG00000263405 OTTHUMG00000179591 NG_005881 9345902 +HGNC:32217 PA2G4P4 proliferation-associated 2G4 pseudogene 4 pseudogene pseudogene Approved 3q25.31 03q25.31 PA2G4L1 2005-09-13 2014-11-19 647033 ENSG00000230457 OTTHUMG00000158644 NR_003284 9345902 PGOHUM00000237834 +HGNC:32218 PA2G4P5 proliferation-associated 2G4 pseudogene 5 pseudogene pseudogene Approved 6q21 06q21 PA2G4L2 2005-09-13 2014-11-19 389424 NG_005878 9345902 +HGNC:32219 PA2G4P6 proliferation-associated 2G4 pseudogene 6 pseudogene pseudogene Approved 9q22.2 09q22.2 PA2G4L3 2005-09-13 2014-11-19 646083 NG_005882 9345902 +HGNC:25687 PAAF1 proteasomal ATPase associated factor 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "FLJ11848|Rpn14" WDR71 WD repeat domain 71 WD repeat domain containing 362 2005-05-26 2007-08-16 2015-11-23 2015-11-23 80227 ENSG00000175575 OTTHUMG00000168062 uc001ouk.3 BC006142 NM_025155 "CCDS8226|CCDS58157|CCDS58158" Q9BRP4 "15831487|17317272|17289585" PAAF1 +HGNC:8554 PABPC1 poly(A) binding protein cytoplasmic 1 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "PABP1|PABPL1" "PAB1|PABPC2" poly(A)-binding protein, cytoplasmic 2 RNA binding motif containing 725 1992-09-28 2016-03-30 2016-10-05 26986 ENSG00000070756 OTTHUMG00000164779 uc003yjs.2 Y00345 NM_002568 CCDS6289 P11940 2885805 MGI:1349722 RGD:619838 PABPC1 604679 +HGNC:15797 PABPC1L poly(A) binding protein cytoplasmic 1 like protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ1069P2.3|PABPC1L1|ePAB" C20orf119 "chromosome 20 open reading frame 119|poly(A) binding protein, cytoplasmic 1-like" RNA binding motif containing 725 2001-10-29 2007-11-21 2016-03-30 2016-10-05 80336 ENSG00000101104 OTTHUMG00000032553 uc010ggv.1 AK026760 NM_001124756 CCDS42878 Q4VXU2 11549316 MGI:1922908 RGD:1563142 PABPC1L +HGNC:27989 PABPC1L2A poly(A) binding protein cytoplasmic 1 like 2A protein-coding gene gene with protein product Approved Xq13.2 Xq13.2 RBM32A "RNA binding motif protein 32A|poly(A) binding protein, cytoplasmic 1-like 2A" RNA binding motif containing 725 2007-02-13 2007-11-21 2016-03-30 2016-03-30 340529 ENSG00000186288 OTTHUMG00000021824 uc004ebg.3 BC041956 NM_001012977 CCDS35334 Q5JQF8 12477932 MGI:3644774 RGD:1566367 PABPC1L2A +HGNC:31852 PABPC1L2B poly(A) binding protein cytoplasmic 1 like 2B protein-coding gene gene with protein product Approved Xq13.2 Xq13.2 RBM32B "RNA binding motif protein 32B|poly(A) binding protein, cytoplasmic 1-like 2B" RNA binding motif containing 725 2007-02-13 2007-11-21 2016-03-30 2016-10-05 645974 ENSG00000184388 OTTHUMG00000021823 uc004ebf.4 NM_001042506 CCDS43972 Q5JQF8 PABPC1L2B +HGNC:50345 PABPC1L2B-AS1 PABPC1L2B antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved Xq13.1-q13.2 Xq13.1-q13.2 2014-04-15 2016-10-11 101928345 ENSG00000226725 OTTHUMG00000021822 NR_110398 +HGNC:8558 PABPC1P1 poly(A) binding protein cytoplasmic 1 pseudogene 1 pseudogene pseudogene Approved 4p14 04p14 PABP1 PABPCP1 "poly(A)-binding protein, cytoplasmic, pseudogene 1|poly(A) binding protein, cytoplasmic, pseudogene 1" 1999-12-17 2010-01-06 2016-03-30 2016-03-30 26980 ENSG00000231707 OTTHUMG00000160579 U64662 NG_001268 10543404 PGOHUM00000245501 +HGNC:8559 PABPC1P2 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudogene pseudogene Approved 2q22.3 02q22.3 "PABP2|PABP4" "PABPCP4|PABPCP2" "poly(A)-binding protein, cytoplasmic, pseudogene 2|poly(A) binding protein, cytoplasmic, pseudogene 4|poly(A)-binding protein, cytoplasmic, pseudogene 4|poly(A) binding protein, cytoplasmic, pseudogene 2" 1999-12-17 2010-01-06 2016-03-30 2016-03-30 728773 ENSG00000198526 OTTHUMG00000153707 "U60801|AF132027" NR_026904 10543404 PGOHUM00000257048 +HGNC:8560 PABPC1P3 poly(A) binding protein cytoplasmic 1 pseudogene 3 pseudogene pseudogene Approved Xq13.2 Xq13.2 PABP3 PABPCP3 "poly(A)-binding protein, cytoplasmic, pseudogene 3|poly(A) binding protein, cytoplasmic, pseudogene 3" 1999-12-17 2010-01-06 2016-03-30 2016-10-05 26978 ENSG00000230673 OTTHUMG00000021858 U64661 NG_001266 10543404 PGOHUM00000241400 +HGNC:8563 PABPC1P4 poly(A) binding protein cytoplasmic 1 pseudogene 4 pseudogene pseudogene Approved 12q14.2 12q14.2 "PABPL2|PABPCP5" "poly(A)-binding protein-like 2|poly(A) binding protein, cytoplasmic pseudogene 5" 1993-06-25 2010-01-06 2016-03-30 2016-03-30 341315 ENSG00000255642 OTTHUMG00000168749 NG_008823 8432538 PGOHUM00000239830 +HGNC:37985 PABPC1P5 poly(A) binding protein cytoplasmic 1 pseudogene 5 pseudogene pseudogene Approved Yq11.21 Yq11.21 poly(A) binding protein, cytoplasmic 1 pseudogene 5 2010-03-16 2016-03-30 2016-03-30 100131374 ENSG00000270455 OTTHUMG00000185074 NG_022964 PGOHUM00000233947 +HGNC:37986 PABPC1P6 poly(A) binding protein cytoplasmic 1 pseudogene 6 pseudogene pseudogene Approved 2p11.1 02p11.1 poly(A) binding protein, cytoplasmic 1 pseudogene 6 2010-03-16 2016-03-30 2016-03-30 100128696 ENSG00000227497 OTTHUMG00000155088 NG_023006 PGOHUM00000240773 +HGNC:37987 PABPC1P7 poly(A) binding protein cytoplasmic 1 pseudogene 7 pseudogene pseudogene Approved 4q24 04q24 poly(A) binding protein, cytoplasmic 1 pseudogene 7 2010-03-16 2016-03-30 2016-03-30 100128183 ENSG00000250651 OTTHUMG00000161018 NG_008662 PGOHUM00000246014 +HGNC:37988 PABPC1P8 poly(A) binding protein cytoplasmic 1 pseudogene 8 pseudogene pseudogene Approved 10q11.21 10q11.21 poly(A) binding protein, cytoplasmic 1 pseudogene 8 2010-03-16 2016-03-30 2016-03-30 100132766 ENSG00000228755 OTTHUMG00000018007 NG_023001 PGOHUM00000238427 +HGNC:37991 PABPC1P9 poly(A) binding protein cytoplasmic 1 pseudogene 9 pseudogene pseudogene Approved 22q11.1 22q11.1 poly(A) binding protein, cytoplasmic 1 pseudogene 9 2010-03-17 2016-03-30 2016-03-30 100130338 ENSG00000229658 OTTHUMG00000140367 NG_011864 PGOHUM00000246379 +HGNC:37992 PABPC1P10 poly(A) binding protein cytoplasmic 1 pseudogene 10 pseudogene pseudogene Approved 3q25.31 03q25.31 D3S3192 PABPL1 "poly(A) binding protein-like 1|poly(A)-binding protein-like 1" 2010-03-17 2016-03-30 2016-03-30 285314 ENSG00000239443 OTTHUMG00000158466 NG_017056 8432538 PGOHUM00000237828 +HGNC:37993 PABPC1P11 poly(A) binding protein cytoplasmic 1 pseudogene 11 pseudogene pseudogene Approved 9p22.2 09p22.2 poly(A) binding protein, cytoplasmic 1 pseudogene 11 2010-03-17 2016-03-30 2016-03-30 100421058 ENSG00000228810 OTTHUMG00000019600 NG_021608 PGOHUM00000235977 +HGNC:37994 PABPC1P12 poly(A) binding protein cytoplasmic 1 pseudogene 12 pseudogene pseudogene Approved 10p11.1 10p11.1 poly(A) binding protein, cytoplasmic 1 pseudogene 12 2010-03-17 2016-03-30 2016-03-30 100129604 ENSG00000225638 OTTHUMG00000018002 NG_022171 PGOHUM00000238742 +HGNC:37995 PABPC1P13 poly(A) binding protein cytoplasmic 1 pseudogene 13 pseudogene pseudogene Approved 16p11.2 16p11.2 poly(A) binding protein, cytoplasmic 1 pseudogene 13 2010-03-17 2016-03-30 2016-03-30 644758 ENSG00000260307 OTTHUMG00000176497 NG_006145 PGOHUM00000256774 +HGNC:8556 PABPC3 poly(A) binding protein cytoplasmic 3 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 "PABP3|tPABP" testis PABP PABPL3 poly(A)-binding protein, cytoplasmic 3 RNA binding motif containing 725 1993-06-25 2016-03-30 2016-10-05 5042 ENSG00000151846 OTTHUMG00000016601 uc001upy.4 AF132026 NM_030979 CCDS9311 Q9H361 "8432538|10543404" PABPC3 604680 +HGNC:8557 PABPC4 poly(A) binding protein cytoplasmic 4 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "iPABP|APP-1" "activated-platelet protein 1|Inducible poly(A)-binding protein" "poly(A)-binding protein, cytoplasmic 4 (inducible form)|poly(A) binding protein, cytoplasmic 4 (inducible form)" RNA binding motif containing 725 1999-12-17 2016-03-30 2016-10-05 8761 ENSG00000090621 OTTHUMG00000009097 uc001cdm.3 U33818 NM_001135653 "CCDS438|CCDS44114|CCDS44115" Q13310 10543404 MGI:2385206 RGD:1305015 PABPC4 603407 +HGNC:31955 PABPC4L poly(A) binding protein cytoplasmic 4 like protein-coding gene gene with protein product Approved 4q28.3 04q28.3 poly(A) binding protein, cytoplasmic 4-like RNA binding motif containing 725 2005-04-11 2016-03-30 2016-03-30 132430 ENSG00000254535 OTTHUMG00000161292 uc010ioe.4 AY672099 NM_001114734 P0CB38 MGI:3643087 RGD:1559517 PABPC4L +HGNC:13629 PABPC5 poly(A) binding protein cytoplasmic 5 protein-coding gene gene with protein product Approved Xq21.31 Xq21.31 PABP5 poly(A)-binding protein, cytoplasmic 5 RNA binding motif containing 725 2002-02-14 2016-03-30 2016-10-05 140886 ENSG00000174740 OTTHUMG00000021959 uc004efg.4 AJ278963 NM_080832 CCDS14460 Q96DU9 11374897 MGI:2136401 RGD:1587661 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PABPC5 PABPC5 300407 +HGNC:31845 PABPC5-AS1 PABPC5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq21.31 Xq21.31 OTTHUMG00000021960 CXorf46 "chromosome X open reading frame 46|PABPC5 antisense RNA 1 (non-protein coding)" 2006-06-30 2011-04-28 2012-08-15 2014-05-20 102724167 ENSG00000234161 OTTHUMG00000021960 uc065aep.1 NR_110659 +HGNC:8565 PABPN1 poly(A) binding protein nuclear 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 PAB2 "OPMD|PABP2" "poly(A)-binding protein, nuclear 1|poly(A) binding protein, nuclear 1" RNA binding motif containing 725 1995-05-01 2016-03-30 2016-03-30 8106 ENSG00000100836 OTTHUMG00000028739 uc001wjk.4 AF026029 NM_004643 CCDS9592 Q86U42 7795598 MGI:1859158 RGD:619928 PABPN1 602279 124051 +HGNC:37237 PABPN1L poly(A) binding protein nuclear 1 like, cytoplasmic protein-coding gene gene with protein product Approved 16q24.3 16q24.3 ePABP2 embryonic poly(A) binding protein 2 poly(A) binding protein nuclear 1 like (cytoplasmic) RNA binding motif containing 725 2009-12-16 2016-07-18 2016-07-18 390748 ENSG00000205022 OTTHUMG00000170127 uc010vpe.3 NM_001080487 "CCDS45547|CCDS73925" A6NDY0 18483763 MGI:2685954 RGD:1562761 PABPN1L +HGNC:8566 PABX pseudoautosomal boundary region, X-linked other region Approved Xp22.32 Xp22.32 1989-06-30 2014-01-30 5043 +HGNC:8567 PABY pseudoautosomal boundary region, Y-linked other region Approved Yp11.3 Yp11.3 1989-06-30 2014-01-30 5044 +HGNC:50552 PACERR PTGS2 antisense NFKB1 complex-mediated expression regulator RNA non-coding RNA RNA, long non-coding Approved 1q31.1 01q31.1 "PACER|PTGS2-AS1" "p50-associated COX-2 extragenic RNA|PTGS2 antisense RNA 1 (head to head)" Long non-coding RNAs 788 2014-06-04 2014-06-05 103752588 ENSG00000273129 OTTHUMG00000186484 "DA380694|BU733503" NR_125801 24843008 +HGNC:19152 PACRG PARK2 coregulated protein-coding gene gene with protein product Approved 6q26 06q26 "PARK2CRG|FLJ32724|Glup|HAK005771" 2003-06-25 2016-05-25 2016-05-25 135138 ENSG00000112530 OTTHUMG00000016116 uc003qub.3 AK057286 NM_152410 "CCDS5284|CCDS43524" Q96M98 12547187 MGI:1916560 RGD:1561027 PACRG 608427 +HGNC:27772 PACRG-AS1 PACRG antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q26 06q26 PACRG antisense RNA 1 (non-protein coding) 2012-06-29 2012-08-15 2015-10-15 285796 ENSG00000281692 OTTHUMG00000189584 uc011egh.3 NR_028390 +HGNC:40871 PACRG-AS2 PACRG antisense RNA 2 non-coding RNA RNA, long non-coding Approved 6q26 06q26 2015-10-15 2015-10-15 101929239 ENSG00000225437 OTTHUMG00000015973 NR_110871 +HGNC:52053 PACRG-AS3 PACRG antisense RNA 3 non-coding RNA RNA, long non-coding Approved 6q26 06q26 2015-10-15 2015-10-15 2015-10-15 2015-10-15 729658 ENSG00000225683 OTTHUMG00000187105 NR_122120 +HGNC:28442 PACRGL PARK2 coregulated like protein-coding gene gene with protein product Approved 4p15.31 04p15.31 MGC29898 C4orf28 chromosome 4 open reading frame 28 2006-07-05 2008-10-02 2016-05-25 2016-05-25 133015 ENSG00000163138 OTTHUMG00000128550 uc010iek.4 AK098692 NM_145048 "CCDS3427|CCDS47034|CCDS58895|CCDS58896|CCDS82912" Q8N7B6 12477932 MGI:1914018 RGD:1311045 PACRGL +HGNC:30032 PACS1 phosphofurin acidic cluster sorting protein 1 protein-coding gene gene with protein product Approved 11q13.1-q13.2 11q13.1-q13.2 "FLJ10209|KIAA1175" 2005-01-05 2016-10-11 55690 ENSG00000175115 OTTHUMG00000166889 uc001oha.3 AB033001 NM_018026 CCDS8129 Q6VY07 "12855553|14608369" MGI:1277113 RGD:620579 PACS1 607492 331697 +HGNC:23794 PACS2 phosphofurin acidic cluster sorting protein 2 protein-coding gene gene with protein product Approved 14q32 14q32 KIAA0602 PACS1L phosphofurin acidic cluster sorting protein 1-like 2005-01-05 2005-02-15 2005-02-15 2016-04-25 23241 ENSG00000179364 OTTHUMG00000170450 uc001yqt.4 AB011174 XM_377355 "CCDS32168|CCDS45178|CCDS58339" Q86VP3 15692567 MGI:1924399 RGD:1597262 PACS2 610423 +HGNC:8570 PACSIN1 protein kinase C and casein kinase substrate in neurons 1 protein-coding gene gene with protein product Approved 6p21.3 06p21.3 SDPI syndapin I F-BAR domain containing 1288 2000-02-29 2015-09-01 29993 ENSG00000124507 OTTHUMG00000014547 uc003ojo.5 AB037800 NM_020804 CCDS4793 Q9BY11 11179684 MGI:1345181 RGD:3247 PACSIN1 606512 +HGNC:8571 PACSIN2 protein kinase C and casein kinase substrate in neurons 2 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 SDPII syndapin II F-BAR domain containing 1288 1999-10-12 2016-10-05 11252 ENSG00000100266 OTTHUMG00000150701 uc003bdg.5 AF128536 NM_007229 "CCDS43023|CCDS54536" Q9UNF0 "10431838|11082044" MGI:1345153 RGD:69411 PACSIN2 604960 +HGNC:8572 PACSIN3 protein kinase C and casein kinase substrate in neurons 3 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 SDPIII syndapin III F-BAR domain containing 1288 2000-02-16 2016-01-15 29763 ENSG00000165912 OTTHUMG00000166870 uc001ndx.4 AF130979 NM_016223 CCDS31481 Q9UKS6 10531379 MGI:1891410 RGD:1307327 PACSIN3 606513 +HGNC:18367 PADI1 peptidyl arginine deiminase 1 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "HPAD10|PDI1|PDI|PAD1" "peptidylarginine deiminase type I|protein-arginine deiminase type-1|hPAD-colony 10" peptidyl arginine deiminase, type I Peptidyl arginine deiminases 677 2002-03-12 2016-04-06 2016-04-06 29943 ENSG00000142623 OTTHUMG00000002294 uc001bah.2 AB033768 NM_013358 CCDS178 Q9ULC6 12416996 MGI:1338893 RGD:3287 PADI1 607934 objectId:2894 3.5.3.15 +HGNC:18341 PADI2 peptidyl arginine deiminase 2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "KIAA0994|PDI2" peptidyl arginine deiminase, type II Peptidyl arginine deiminases 677 2002-03-12 2016-04-06 2016-10-05 11240 ENSG00000117115 OTTHUMG00000002295 uc001baf.4 AB030176 XR_001736944 CCDS177 Q9Y2J8 2768262 MGI:1338892 RGD:3288 PADI2 607935 3.5.3.15 +HGNC:18337 PADI3 peptidyl arginine deiminase 3 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 PDI3 peptidyl arginine deiminase, type III Peptidyl arginine deiminases 677 2002-03-17 2016-04-06 2016-04-06 51702 ENSG00000142619 OTTHUMG00000002373 uc001bai.4 AB026831 XM_011541571 CCDS179 Q9ULW8 11069618 MGI:1338891 RGD:3289 PADI3 606755 objectId:2878 3.5.3.15 +HGNC:18368 PADI4 peptidyl arginine deiminase 4 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "PAD|PDI5|PDI4" PADI5 "peptidyl arginine deiminase, type V|peptidyl arginine deiminase, type IV" Peptidyl arginine deiminases 677 2002-03-17 2016-04-06 2016-04-06 23569 ENSG00000159339 OTTHUMG00000002371 uc001baj.3 AB017919 NM_012387 CCDS180 Q9UM07 10488123 MGI:1338898 RGD:3290 PADI4 605347 objectId:2877 3.5.3.15 +HGNC:20449 PADI6 peptidyl arginine deiminase 6 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 peptidyl arginine deiminase, type VI Peptidyl arginine deiminases 677 2003-05-22 2016-04-06 2016-04-06 353238 ENSG00000276747 OTTHUMG00000002372 uc031trf.2 AY422079 NM_207421 CCDS72715 Q6TGC4 15087120 MGI:2655198 RGD:1560424 PADI6 610363 3.5.3.15 +HGNC:8573 PAEP progestagen associated endometrial protein protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "PEP|PP14|GdA|GdS|GdF|PAEG|GD|MGC138509|MGC142288" "glycodelin-A|glycodelin-S|glycodelin-F|progesterone-associated endometrial protein|glycodelin|PP14 protein (placental protein 14)|pregnancy-associated endometrial alpha-2-globulin|alpha uterine protein" progestagen-associated endometrial protein Lipocalins 631 1991-07-25 2016-03-16 2016-10-05 5047 ENSG00000122133 OTTHUMG00000020914 uc004cgd.2 NM_001018049 CCDS35173 P09466 "3320533|2016092" PAEP 173310 +HGNC:25459 PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component protein-coding gene gene with protein product Approved 19q13.1 19q13.1 "PD2|F23149_1|FLJ11123" Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) Paf1/RNA polymerase II complex 1029 2005-07-20 2015-07-08 2015-07-08 54623 ENSG00000006712 OTTHUMG00000182968 uc002old.5 NM_019088 "CCDS12533|CCDS59387" Q8N7H5 "15632063|24038468" MGI:1923988 RGD:1306219 PAF1 610506 +HGNC:8574 PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "LIS1|PAFAH|NudF" lissencephaly-1 "MDCR|MDS" "platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit (45kD)|Miller-Dieker syndrome chromosome region|platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa|platelet-activating factor acetylhydrolase, isoform Ib, subunit 1 (45kDa)|platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)" WD repeat domain containing 362 1998-04-03 2015-11-16 2016-06-13 5048 ENSG00000007168 OTTHUMG00000177574 uc002fuw.5 L25107 NM_000430 CCDS32528 P43034 "8355785|9063735" MGI:109520 RGD:620331 PAFAH1B1 601545 124062 +HGNC:8577 PAFAH1B1P1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 pseudogene 1 pseudogene pseudogene Approved 2p11.2 02p11.2 LIS2 PAFAH1P1 "platelet-activating factor acetylhydrolase, isoform Ib, pseudogene 1|platelet-activating factor acetylhydrolase, isoform Ib, subunit 1 pseudogene 1" 1999-12-22 2009-12-02 2016-03-09 2016-03-09 7845 AF092544 NG_003165 10575211 +HGNC:8578 PAFAH1B1P2 platelet activating factor acetylhydrolase 1b regulatory subunit 1 pseudogene 2 pseudogene pseudogene Approved 2q13 02q13 LIS2P PAFAH1P2 "platelet-activating factor acetylhydrolase, isoform Ib, pseudogene 2|platelet-activating factor acetylhydrolase, isoform Ib, subunit 1 pseudogene 2" 1999-12-22 2009-12-02 2016-03-09 2016-03-09 27002 AF092545 NG_003167 10575211 +HGNC:8575 PAFAH1B2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 protein-coding gene gene with protein product Approved 11q23 11q23 PAF-AH1b alpha 2 subunit "platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa|platelet-activating factor acetylhydrolase, isoform Ib, subunit 2 (30kDa)|platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa)" 1998-04-03 2015-11-16 2015-11-16 5049 ENSG00000168092 OTTHUMG00000167064 uc001pqe.4 D63390 NM_002572 "CCDS8380|CCDS53713|CCDS53714|CCDS53715" P68402 "9144386|9693049" MGI:108415 RGD:620332 PAFAH1B2 602508 +HGNC:8576 PAFAH1B3 platelet activating factor acetylhydrolase 1b catalytic subunit 3 protein-coding gene gene with protein product Approved 19q13.1 19q13.1 PAF-AH1b alpha 1 subunit "platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit (29kD)|platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa|platelet-activating factor acetylhydrolase, isoform Ib, subunit 3 (29kDa)|platelet-activating factor acetylhydrolase 1b, catalytic subunit 3 (29kDa)" 1998-04-03 2015-11-16 2015-11-16 5050 ENSG00000079462 OTTHUMG00000182795 uc010xwi.1 D63391 NM_002573 CCDS12602 Q15102 7669037 MGI:108414 RGD:620333 PAFAH1B3 603074 +HGNC:8579 PAFAH2 platelet activating factor acetylhydrolase 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 HSD-PLA2 "platelet-activating factor acetylhydrolase 2 (40kD)|platelet-activating factor acetylhydrolase 2, 40kDa" 1998-04-03 2016-03-09 2016-10-05 5051 ENSG00000158006 OTTHUMG00000007437 uc001bld.4 D87845 NM_000437 CCDS270 Q99487 "8955149|9494101" MGI:2140321 RGD:631399 PAFAH2 602344 objectId:2508 +HGNC:30043 PAG1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "PAG|CBP" "Csk-binding protein|transmembrane adaptor protein PAG" phosphoprotein associated with glycosphingolipid microdomains 1 2005-04-25 2014-04-30 2014-11-18 55824 ENSG00000076641 OTTHUMG00000164592 uc003ybz.4 AF240634 NM_018440 CCDS6227 Q9NWQ8 10790433 MGI:2443160 RGD:620394 PAG1 605767 +HGNC:4107 PAGE1 PAGE family member 1 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "PAGE-1|GAGE-9|CT16.3" GAGEB1 "G antigen, family B, 1 (prostate associated)|P antigen family, member 1 (prostate associated)" 1999-04-15 2005-01-27 2015-11-18 2015-11-18 8712 ENSG00000068985 OTTHUMG00000033224 uc004dom.4 AF058989 XM_011543998 CCDS14327 O75459 "9651357|9724777" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PAGE1 PAGE1 300288 +HGNC:31804 PAGE2 PAGE family member 2 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "MGC62094|PAGE-2|CT16.4" GAGEC2 "G antigen, family C, 2|P antigen family, member 2 (prostate associated)" 2005-03-22 2015-11-18 2016-10-05 203569 ENSG00000234068 OTTHUMG00000021648 uc004duf.2 BC054022 NM_207339 CCDS14367 Q7Z2X7 9724777 PAGE2 300738 +HGNC:31805 PAGE2B PAGE family member 2B protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 CT16.5 P antigen family, member 2B 2005-06-01 2015-11-18 2016-10-05 389860 ENSG00000238269 OTTHUMG00000021645 uc004due.5 XM_372224 CCDS35304 Q5JRK9 PAGE2B +HGNC:4110 PAGE3 PAGE family member 3 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "PAGE-3|CT16.6" GAGED1 "G antigen, family D, 1|P antigen family, member 3 (prostate associated)" 1999-04-15 2005-01-27 2015-11-18 2016-10-05 139793 ENSG00000204279 OTTHUMG00000021654 uc022bxs.4 XM_060054 CCDS35307 Q5JUK9 9724777 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PAGE3 PAGE3 300739 +HGNC:4108 PAGE4 PAGE family member 4 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "PAGE-4|CT16.7" GAGEC1 "G antigen, family C, 1|P antigen family, member 4 (prostate associated)" 1999-04-15 2005-01-27 2015-11-18 2015-11-18 9506 ENSG00000101951 OTTHUMG00000024155 uc064zfy.1 AF275258 NM_007003 CCDS35274 O60829 9724777 PAGE4 300287 +HGNC:29992 PAGE5 PAGE family member 5 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "PAGE-5|CT16.1|CT16.2" "cancer/testis antigen family 16, member 1|cancer/testis antigen family 16, member 2" P antigen family, member 5 (prostate associated) 2005-03-22 2015-11-18 2016-10-05 90737 ENSG00000158639 OTTHUMG00000021650 uc004duj.4 AJ344352 NM_130467 "CCDS14368|CCDS35306" Q96GU1 "11920606|11992404" PAGE5 +HGNC:28707 PAGR1 PAXIP1 associated glutamate rich protein 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "MGC4606|GAS|PA1" "glutamate-rich coactivator interacting with SRC1/NCOA1|PTIP-associated 1 protein|glutamate-rich coactivator associated with SRC1" C16orf53 "chromosome 16 open reading frame 53|PAXIP1 associated glutamate-rich protein 1" 2005-04-07 2012-10-12 2016-03-22 2016-03-22 79447 ENSG00000280789 OTTHUMG00000177143 uc002dug.5 BC003640 NM_024516 CCDS10655 Q9BTK6 "17500065|19039327" MGI:1914528 RGD:1305592 612033 +HGNC:8582 PAH phenylalanine hydroxylase protein-coding gene gene with protein product Approved 12q23.2 12q23.2 PH phenylalanine 4-monooxygenase 1986-01-01 2016-01-15 5053 ENSG00000171759 OTTHUMG00000169966 uc001tjq.2 U49897 XM_017019370 CCDS9092 P00439 2063869 MGI:97473 RGD:3248 Phenylalanine Hydroxylase Locus Knowledgebase|http://www.pahdb.mcgill.ca PAH 612349 124068 objectId:1240 1.14.16.1 +HGNC:8587 PAICS phosphoribosylaminoimidazole carboxylase; phosphoribosylaminoimidazolesuccinocarboxamide synthase protein-coding gene gene with protein product Approved 4q12 04q12 "ADE2H1|AIRC" PAIS phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase 1991-03-11 2015-11-20 2015-11-20 10606 ENSG00000128050 OTTHUMG00000160957 uc003hbu.2 X53793 NM_006452 "CCDS47060|CCDS47061" P22234 "2253271|8106516" MGI:1914304 RGD:620066 PAICS 172439 "4.1.1.21|6.3.2.6" +HGNC:8588 PAICSP1 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 1 pseudogene pseudogene Approved 9p13.2 09p13.2 1995-11-02 2014-11-19 780814 ENSG00000226055 OTTHUMG00000019930 NG_005828 PGOHUM00000250520 +HGNC:8589 PAICSP2 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 2 pseudogene pseudogene Approved 9q22.31 09q22.31 1995-11-02 2016-10-05 780815 ENSG00000228595 OTTHUMG00000020210 NG_005829 PGOHUM00000250530 +HGNC:38096 PAICSP3 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 3 pseudogene pseudogene Approved 6q13 06q13 2010-04-16 2010-09-21 780810 ENSG00000226840 OTTHUMG00000015026 NG_005824 PGOHUM00000250212 +HGNC:38097 PAICSP4 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 4 pseudogene pseudogene Approved 8p23.2 08p23.2 2010-04-16 2011-05-24 780813 ENSG00000254244 OTTHUMG00000163651 NG_005827 PGOHUM00000250016 +HGNC:38098 PAICSP5 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 5 pseudogene pseudogene Approved 7q35 07q35 2010-04-16 2014-11-19 780811 ENSG00000229877 OTTHUMG00000155897 NG_005825 PGOHUM00000233053 +HGNC:38099 PAICSP6 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 6 pseudogene pseudogene Approved 7q35 07q35 2010-04-16 2014-11-19 780812 ENSG00000241136 OTTHUMG00000157767 NG_005826 PGOHUM00000250973 +HGNC:38100 PAICSP7 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 pseudogene pseudogene Approved Xq21.33 Xq21.33 2010-04-16 2016-10-05 780816 ENSG00000232293 OTTHUMG00000021977 NG_005830 PGOHUM00000250055 +HGNC:16945 PAIP1 poly(A) binding protein interacting protein 1 protein-coding gene gene with protein product Approved 5p12 05p12 2003-12-16 2014-11-19 10605 ENSG00000172239 OTTHUMG00000096960 uc003job.4 AF013758 NM_006451 "CCDS3947|CCDS3948|CCDS47204" Q9H074 "9548260|11230166" MGI:2384993 RGD:1305668 PAIP1 605184 +HGNC:18240 PAIP1P1 poly(A) binding protein interacting protein 1 pseudogene 1 pseudogene pseudogene Approved 6p21.3 06p21.3 "bQB44E15.5|bPG254M11.3|bCX300M20.3" 2003-12-16 2014-11-19 100421582 ENSG00000233892 OTTHUMG00000034813 NG_025805 +HGNC:17970 PAIP2 poly(A) binding protein interacting protein 2 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 PAIP2A 2003-12-16 2016-10-05 51247 ENSG00000120727 OTTHUMG00000129227 uc003led.5 AF151052 NM_016480 CCDS4211 Q9BPZ3 "11172725|16804161" MGI:1915119 RGD:1359176 PAIP2 605604 +HGNC:29200 PAIP2B poly(A) binding protein interacting protein 2B protein-coding gene gene with protein product Approved 2p13.3 02p13.3 KIAA1155 2007-03-26 2014-11-19 400961 ENSG00000124374 OTTHUMG00000153284 uc002shu.3 XM_376062 CCDS46322 Q9ULR5 16804161 MGI:2386865 RGD:1307930 PAIP2B 611018 +HGNC:8590 PAK1 p21 (RAC1) activated kinase 1 protein-coding gene gene with protein product Approved 11q13.5-q14.1 11q13.5-q14.1 STE20 homolog, yeast "p21/Cdc42/Rac1-activated kinase 1 (yeast Ste20-related)|p21/Cdc42/Rac1-activated kinase 1 (STE20 homolog, yeast)|p21 protein (Cdc42/Rac)-activated kinase 1" 1997-12-05 2016-05-03 2016-10-11 5058 ENSG00000149269 OTTHUMG00000165138 uc001oyh.5 U51120 NM_002576 "CCDS8250|CCDS44687" Q13153 "8805275|9533029" MGI:1339975 RGD:3250 PAK1 602590 objectId:2133 2.7.11.1 +HGNC:20882 PAK1IP1 PAK1 interacting protein 1 protein-coding gene gene with protein product Approved 6p24.2 06p24.2 "FLJ20624|hPIP1|PIP1|bA421M1.5|MAK11|WDR84" WD repeat domain containing 362 2003-06-09 2016-10-05 55003 ENSG00000111845 OTTHUMG00000014245 uc003mzg.4 AF283303 NM_017906 CCDS34339 Q9NWT1 11371639 MGI:1915333 RGD:1565353 PAK1IP1 607811 +HGNC:8591 PAK2 p21 (RAC1) activated kinase 2 protein-coding gene gene with protein product Approved 3q29 03q29 "PAK65|PAKgamma" S6/H4 kinase "p21 (CDKN1A)-activated kinase 2|p21 protein (Cdc42/Rac)-activated kinase 2" 1998-03-25 2016-05-03 2016-05-03 5062 ENSG00000180370 OTTHUMG00000155534 uc003fwy.4 U24153 NM_002577 CCDS3321 Q13177 "7744004|7618083" MGI:1339984 RGD:6497075 PAK2 605022 objectId:2134 2.7.11.1 +HGNC:8592 PAK3 p21 (RAC1) activated kinase 3 protein-coding gene gene with protein product Approved Xq23 Xq23 "hPAK3|bPAK" "MRX30|MRX47" "mental retardation, X-linked 47|p21 (CDKN1A)-activated kinase 3|p21 protein (Cdc42/Rac)-activated kinase 3" X-linked mental retardation 103 1998-03-25 2016-05-03 2016-10-05 5063 ENSG00000077264 OTTHUMG00000022202 uc010npt.2 AF068864 NM_002578 "CCDS14554|CCDS48151|CCDS48152|CCDS48153" O75914 "8826460|9731525" MGI:1339656 RGD:3251 PAK3 300142 159942 objectId:2135 2.7.11.1 +HGNC:16059 PAK4 p21 (RAC1) activated kinase 4 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "p21(CDKN1A)-activated kinase 4|p21 protein (Cdc42/Rac)-activated kinase 4" 2001-07-12 2016-05-03 2016-05-03 10298 ENSG00000130669 OTTHUMG00000182800 uc002okn.2 AJ011855 XM_011526317 "CCDS12528|CCDS33019" O96013 "9822598|10461188" MGI:1917834 RGD:1307705 PAK4 605451 objectId:2136 2.7.11.1 +HGNC:15916 PAK5 p21 (RAC1) activated kinase 5 protein-coding gene gene with protein product Approved 20p12.2 20p12.2 KIAA1264 PAK7 "p21(CDKN1A)-activated kinase 7|p21 protein (Cdc42/Rac)-activated kinase 7|p21 (RAC1) activated kinase 7" 2001-06-21 2016-06-06 2016-06-06 2016-10-05 57144 ENSG00000101349 OTTHUMG00000031857 uc002wnl.3 AB033090 XM_017027960 CCDS13107 Q9P286 "11756552|10574462" MGI:1920334 RGD:1312009 608038 objectId:2138 2.7.11.1 +HGNC:16061 PAK6 p21 (RAC1) activated kinase 6 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 PAK5 "p21(CDKN1A)-activated kinase 6|p21 protein (Cdc42/Rac)-activated kinase 6" 2001-07-12 2016-05-03 2016-10-05 56924 ENSG00000137843 OTTHUMG00000129921 uc059hqb.1 AF276893 NM_020168 "CCDS10054|CCDS61590" Q9NQU5 11278661 MGI:2679420 RGD:1306213 PAK6 608110 objectId:2137 2.7.11.1 +HGNC:26144 PALB2 partner and localizer of BRCA2 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "FLJ21816|FANCN" Fanconi anemia, complementation group N Fanconi anemia complementation groups 548 2007-01-15 2016-10-12 79728 ENSG00000083093 OTTHUMG00000177097 uc002dlx.2 NM_024675 CCDS32406 Q86YC2 "16793542|17200672" MGI:3040695 RGD:1304759 "Fanconi anemia database|http://chromium.liacs.nl/LOVD2/FANC/home.php?select_db=FANCN|LRG_308|http://www.lrg-sequence.org/LRG/LRG_308" PALB2 610355 139189 +HGNC:23530 PALD1 phosphatase domain containing, paladin 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "PALD|KIAA1274" "paladin|KIAA1274" 2004-05-27 2012-07-17 2012-07-17 2016-10-05 27143 ENSG00000107719 OTTHUMG00000018411 uc001jrd.5 AB033100 NM_014431 CCDS31215 Q9ULE6 MGI:1351623 RGD:1305933 614656 +HGNC:17068 PALLD palladin, cytoskeletal associated protein protein-coding gene gene with protein product Approved 4q32.3 04q32.3 "KIAA0992|SIH002|CGI-151" I-set domain containing 593 2005-11-17 2014-11-19 23022 ENSG00000129116 OTTHUMG00000161097 uc003iru.3 AB023209 NM_016081 "CCDS34098|CCDS54818|CCDS54819|CCDS54820" Q8WX93 "10231032|10931874" MGI:1919583 RGD:2322545 PALLD 608092 441210 +HGNC:8594 PALM paralemmin protein-coding gene gene with protein product Approved 19p13.3 19p13.3 KIAA0270 1997-05-22 2014-11-19 5064 ENSG00000099864 OTTHUMG00000181785 uc002lpm.3 Y16270 NM_002579 "CCDS32857|CCDS32858" O75781 "9615234|9813098" MGI:1261814 RGD:620341 PALM 608134 +HGNC:15845 PALM2 paralemmin 2 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 2001-08-30 2016-04-25 114299 ENSG00000243444 OTTHUMG00000020479 uc004beg.4 AJ312216 NM_001037293 "CCDS35099|CCDS48002" Q8IXS6 11478809 MGI:1934601 RGD:6497336 PALM2 +HGNC:33529 PALM2-AKAP2 PALM2-AKAP2 readthrough other readthrough Approved 9q31.3 09q31.3 2007-07-31 2014-11-19 445815 ENSG00000157654 OTTHUMG00000156812 uc004bej.5 AB023137 NM_147150 "CCDS35100|CCDS35101" 11478809 PALM2-AKAP2 +HGNC:33274 PALM3 paralemmin 3 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 2010-04-15 2010-04-15 342979 ENSG00000187867 OTTHUMG00000181991 uc010xnk.2 NM_001145028 CCDS46001 A6NDB9 MGI:1921587 RGD:2323602 PALM3 +HGNC:15846 PALMD palmdelphin protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "FLJ20271|PALML" C1orf11 2001-08-30 2015-02-02 54873 ENSG00000099260 OTTHUMG00000010764 uc001dsg.4 AJ312214 NM_017734 CCDS758 Q9NP74 11478809 MGI:2148896 RGD:1305624 PALMD 610182 +HGNC:8596 PAM peptidylglycine alpha-amidating monooxygenase protein-coding gene gene with protein product Approved 5q21.1 05q21.1 "PAL|PHM" "peptidyl-alpha-hydroxyglycine alpha-amidating lyase|peptidylglycine alpha-hydroxylating monooxygenase" 1992-06-08 2016-10-05 5066 ENSG00000145730 OTTHUMG00000128729 uc003knt.4 AB095007 NM_000919 "CCDS4092|CCDS4093|CCDS4094|CCDS43348|CCDS54885" P19021 2357221 MGI:97475 RGD:3252 PAM 170270 1.14.17.3 +HGNC:29679 PAM16 presequence translocase associated motor 16 homolog protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "Magmas|Tim16|TIMM16" mitochondria associated protein involved in granulocyte macrophage colony stimulating factor signal transduction presequence translocase-associated motor 16 homolog (S. cerevisiae) 2010-09-01 2016-07-18 2016-07-18 51025 ENSG00000217930 OTTHUMG00000129466 uc059qdf.1 AK026514 NM_016069 CCDS10512 Q9Y3D7 "10810093|11750097" MGI:1913699 RGD:1598163 PAM16 614336 404774 +HGNC:24554 PAMR1 peptidase domain containing associated with muscle regeneration 1 protein-coding gene gene with protein product Approved 11p13 11p13 "RAMP|DKFZP586H2123" regeneration-associated muscle protease Sushi domain containing 1179 2009-04-07 2014-11-18 25891 ENSG00000149090 OTTHUMG00000166328 uc031xjx.2 NM_015430 "CCDS7898|CCDS31460|CCDS60759|CCDS60760" Q6UXH9 15111323 MGI:2445082 RGD:1308745 PAMR1 S01.998 +HGNC:20074 PAN2 PAN2 poly(A) specific ribonuclease subunit protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "KIAA0710|hPAN2" PAN2 homolog, PABP1 dependent poly A specific ribonuclease subunit (S. cerevisiae) USP52 "ubiquitin specific protease 52|ubiquitin specific peptidase 52|PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)" "Ubiquitin specific peptidases|Exonucleases" "366|544" 2003-09-04 2008-01-08 2014-03-27 2015-07-22 9924 ENSG00000135473 OTTHUMG00000170412 uc001sky.4 AB014610 NM_014871 "CCDS8915|CCDS44922|CCDS53802" Q504Q3 "12838346|14583602" MGI:1918984 RGD:1303301 PAN2 C19.978 +HGNC:29991 PAN3 PAN3 poly(A) specific ribonuclease subunit protein-coding gene gene with protein product Approved 13q12.2 13q12.2 PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) 2006-04-10 2014-03-27 2016-04-25 255967 ENSG00000152520 OTTHUMG00000016645 uc001urz.4 AK091307 NM_175854 CCDS9329 Q58A45 14583602 MGI:1919837 RGD:1590880 PAN3 +HGNC:39932 PAN3-AS1 PAN3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.2 13q12.2 PAN3 antisense RNA 1 (non-protein coding) 2011-04-12 2012-08-15 2012-10-12 100288730 ENSG00000261485 OTTHUMG00000175971 uc058wcc.1 BC045730 NR_029383 +HGNC:52282 PANCR PITX2 adjacent non-coding RNA non-coding RNA RNA, long non-coding Approved 4q25 04q25 Long non-coding RNAs 788 2016-01-29 2016-01-29 105377363 ENSG00000250103 OTTHUMG00000161118 XR_939071 26783232 +HGNC:44048 PANDAR promoter of CDKN1A antisense DNA damage activated RNA non-coding RNA RNA, long non-coding Approved 6p21.2 06p21.2 PANDA p21 associated ncRNA DNA damage activated Long non-coding RNAs 788 2012-12-15 2014-10-22 101154753 ENSG00000281450 OTTHUMG00000189732 uc032wvg.1 JF803844 NR_109836 21642992 PANDA +HGNC:8598 PANK1 pantothenate kinase 1 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "MGC24596|PANK1a|PANK1b" PANK pantothenate kinase 2000-05-02 2002-11-15 2002-11-13 2014-11-19 53354 ENSG00000152782 OTTHUMG00000018718 uc001kgn.3 AF355198 XM_017016333 "CCDS7405|CCDS7406|CCDS31244" Q8TE04 11809413 MGI:1922985 RGD:1304677 PANK1 606160 +HGNC:15894 PANK2 pantothenate kinase 2 protein-coding gene gene with protein product Approved 20p13 20p13 "HSS|FLJ11729|PKAN|HARP" Hallervorden-Spatz syndrome "C20orf48|NBIA1" neurodegeneration with brain iron accumulation 1 (Hallervorden-Spatz syndrome) 2001-06-21 2002-09-06 2008-07-31 2016-10-12 80025 ENSG00000125779 OTTHUMG00000031768 uc002wkc.3 AK021791 NM_024960 "CCDS13071|CCDS13072" Q9BZ23 "8944032|11479594" MGI:1921700 RGD:1305169 LRG_1016|http://www.lrg-sequence.org/LRG/LRG_1016 PANK2 606157 124070 2.7.1.33 +HGNC:19365 PANK3 pantothenate kinase 3 protein-coding gene gene with protein product Approved 5q34 05q34 FLJ12899 2002-10-11 2016-10-05 79646 ENSG00000120137 OTTHUMG00000130410 uc003lzy.4 AK022961 NM_024594 CCDS4368 Q9H999 11479594 MGI:2387464 RGD:1310531 PANK3 606161 +HGNC:19366 PANK4 pantothenate kinase 4 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 FLJ10782 2002-10-11 2015-08-25 55229 ENSG00000157881 OTTHUMG00000000791 uc001ajm.3 AK001644 XM_017001633 CCDS42 Q9NVE7 11479594 MGI:2387466 RGD:628857 PANK4 606162 +HGNC:51237 PANO1 proapoptotic nucleolar protein 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 PANO 2014-10-23 2014-10-23 101927423 ENSG00000274897 NM_001293167 CCDS73233 I0J062 22094112 +HGNC:8599 PANX1 pannexin 1 protein-coding gene gene with protein product Approved 11q21 11q21 "MRS1|UNQ2529|PX1" innexin Pannexins 288 2000-07-31 2016-10-05 24145 ENSG00000110218 OTTHUMG00000167757 uc001per.4 AF093239 NM_015368 CCDS8296 Q96RD7 14597722 MGI:1860055 RGD:735204 PANX1 608420 objectId:735 +HGNC:8600 PANX2 pannexin 2 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "hPANX2|PX2" Pannexins 288 2000-07-31 2014-11-19 56666 ENSG00000073150 OTTHUMG00000044649 uc003bjn.5 NM_052839 "CCDS14085|CCDS54544" Q96RD6 "14702039|14597722" MGI:1890615 RGD:735191 PANX2 608421 objectId:736 +HGNC:20573 PANX3 pannexin 3 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 Px3 Pannexins 288 2003-02-26 2015-08-25 116337 ENSG00000154143 OTTHUMG00000165925 uc001qah.4 AF406650 NM_052959 CCDS8447 Q96QZ0 MGI:1918881 RGD:735137 PANX3 608422 objectId:737 +HGNC:20837 PAOX polyamine oxidase protein-coding gene gene with protein product Approved 10q26.3 10q26.3 PAO polyamine oxidase (exo-N4-amino) 2003-11-13 2016-08-11 2016-08-11 196743 ENSG00000148832 OTTHUMG00000019318 uc001lmv.5 BC032778 NM_152911 "CCDS7682|CCDS7683|CCDS7684" Q6QHF9 12660232 MGI:1916983 RGD:1561125 PAOX 615853 +HGNC:26776 PAPD4 poly(A) RNA polymerase D4, non-canonical protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "FLJ38499|GLD2|TUT2" TUTase2 PAP associated domain containing 4 Non-canonical poly(A) polymerases 1318 2004-04-07 2016-07-18 2016-07-18 167153 ENSG00000164329 OTTHUMG00000108163 uc010jaf.1 AL833136 NM_173797 "CCDS4048|CCDS75265|CCDS75266" Q6PIY7 "12477932|21813625|26926106" MGI:2140950 RGD:1306438 PAPD4 614121 2.7.7.19 +HGNC:30758 PAPD5 poly(A) RNA polymerase D5, non-canonical protein-coding gene gene with protein product Approved 16q12.1 16q12.1 TRF4-2 TUTase3 PAP associated domain containing 5 Non-canonical poly(A) polymerases 1318 2004-04-07 2016-07-18 2016-07-18 64282 ENSG00000121274 OTTHUMG00000173452 uc010vgo.3 AF089897 NM_022447 CCDS54006 Q8NDF8 "10066793|21788334" MGI:1917820 RGD:1309587 PAPD5 605540 2.7.7.19 +HGNC:16705 PAPD7 poly(A) RNA polymerase D7, non-canonical protein-coding gene gene with protein product Approved 5p15.31 05p15.31 "POLK|TRF4|LAK-1|TRF4-1" "topoisomerase-related function protein 4-1|polymerase (DNA-directed) sigma|DNA polymerase kappa|TUTase5" POLS "polymerase (DNA directed) sigma|PAP associated domain containing 7" Non-canonical poly(A) polymerases 1318 2001-09-27 2010-01-19 2016-07-18 2016-10-05 11044 ENSG00000112941 OTTHUMG00000090457 uc003jdx.2 AF089896 NM_006999 CCDS3871 Q5XG87 "10066793|10926539|23376078" MGI:2682295 RGD:1307356 PAPD7 605198 2.7.7.19 +HGNC:19262 PAPLN papilin, proteoglycan like sulfated glycoprotein protein-coding gene gene with protein product Approved 14q24.2 14q24.2 MGC50452 "I-set domain containing|ADAMTS like" "593|947" 2003-12-10 2016-06-07 2016-06-07 89932 ENSG00000100767 OTTHUMG00000171366 uc010ttx.3 BC042057 NM_173462 CCDS32114 O95428 "11076767|19734141" MGI:2386139 RGD:1311176 PAPLN I02.972 +HGNC:14981 PAPOLA poly(A) polymerase alpha protein-coding gene gene with protein product Approved 14q32.2 14q32.2 PAP 2001-03-27 2016-01-15 10914 ENSG00000090060 OTTHUMG00000171441 uc001yfq.4 X76770 XM_017020935 "CCDS9946|CCDS58334|CCDS58335" P51003 "8302877|10429366" MGI:109301 RGD:1308673 PAPOLA 605553 2.7.7.19 +HGNC:15970 PAPOLB poly(A) polymerase beta protein-coding gene gene with protein product Approved 7p22.1 07p22.1 PAPT poly(A) polymerase beta (testis specific) 2001-06-25 2015-11-06 2015-11-06 56903 ENSG00000218823 OTTHUMG00000151759 uc003snk.4 AF218840 NM_020144 CCDS78202 Q9NRJ5 11150526 MGI:1932115 RGD:1310946 PAPOLB 607436 2.7.7.19 +HGNC:14982 PAPOLG poly(A) polymerase gamma protein-coding gene gene with protein product Approved 2p16.1 02p16.1 FLJ12972 2001-05-22 2014-11-19 64895 ENSG00000115421 OTTHUMG00000129419 uc002sai.4 AC012498 NM_022894 CCDS1863 Q9BWT3 MGI:2442119 RGD:1310337 PAPOLG 616865 2.7.7.19 +HGNC:8602 PAPPA pappalysin 1 protein-coding gene gene with protein product Approved 9q33.1 09q33.1 "PAPP-A|PAPPA1|IGFBP-4ase|PAPA|ASBABP2|DIPLA1" "insulin-like growth factor-dependent IGF binding protein-4 protease|aspecific BCL2 ARE-binding protein 2|differentially placenta 1 expressed protein" pregnancy-associated plasma protein A, pappalysin 1 "Pappalysins|Sushi domain containing" "897|1179" 1992-09-25 2016-03-29 2016-03-29 5069 ENSG00000182752 OTTHUMG00000021045 uc004bjn.4 NM_002581 CCDS6813 Q13219 7679961 MGI:97479 RGD:1307742 PAPPA 176385 M43.004 +HGNC:35152 PAPPA-AS1 PAPPA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q33.2 09q33.2 "PAPPA-AS|DIPAS|TAF4B|TAF2C2|TAFII105|NCRNA00156" "DIPLA1-antisense expressed|non-protein coding RNA 156" PAPPAS "PAPPA antisense RNA (non-protein coding)|PAPPA antisense RNA 1 (non-protein coding)" 2008-09-22 2011-04-20 2012-08-17 2014-11-19 493913 ENSG00000256040 uc033dge.2 XR_041634 Q5QFB9 15656990 PAPPA-AS1 610689 +HGNC:35160 PAPPA-AS2 PAPPA antisense RNA 2 non-coding RNA RNA, long non-coding Approved 9q33.1 09q33.1 AGU1 adipogenesis up-regulated transcript 1 2013-07-01 2013-07-04 103611155 ENSG00000226604 OTTHUMG00000020554 AK092105 19531736 +HGNC:14615 PAPPA2 pappalysin 2 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "PAPPE|PAPP-A2" PLAC3 placenta-specific 3 "Pappalysins|Sushi domain containing" "897|1179" 2002-04-03 2004-07-09 2004-07-07 2015-08-25 60676 ENSG00000116183 OTTHUMG00000035025 uc001gkz.4 BG354569 XM_017002023 "CCDS41438|CCDS41439" Q9BXP8 "11018262|11264294" MGI:3051647 RGD:1591785 PAPPA2 M43.005 +HGNC:8603 PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding gene gene with protein product Approved 4q25 04q25 "ATPSK1|PAPSS" "sulfate adenylyltransferase|adenylyl-sulfate kinase" 1999-01-29 2016-10-05 9061 ENSG00000138801 OTTHUMG00000131210 uc003hyk.4 Y10387 NM_005443 CCDS3676 O43252 "9576487|9771708" MGI:1330587 RGD:1308081 PAPSS1 603262 "2.7.7.4|2.7.1.25" +HGNC:8604 PAPSS2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding gene gene with protein product Approved 10q23.2-q23.31 10q23.2-q23.31 ATPSK2 "sulfate adenylyltransferase|adenylyl-sulfate kinase|adenosine 5'-phosphosulfate kinase|bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2" 1999-01-29 2016-10-11 9060 ENSG00000198682 OTTHUMG00000018683 uc001kex.4 AF091242 NM_004670 "CCDS7385|CCDS44453" O95340 9771708 MGI:1330223 RGD:1307012 PAPSS2 603005 124077 "2.7.7.4|2.7.1.25" +HGNC:30130 PAQR3 progestin and adipoQ receptor family member 3 protein-coding gene gene with protein product Approved 4q21 04q21 progestin and adipoQ receptor family member III Progestin and adipoQ receptor family 930 2004-06-23 2016-03-30 2016-03-30 152559 ENSG00000163291 OTTHUMG00000161026 uc062xpp.1 AK055774 NM_177453 CCDS34020 Q6TCH7 16044242 MGI:2679683 RGD:1310426 PAQR3 614577 +HGNC:26386 PAQR4 progestin and adipoQ receptor family member 4 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ30002 progestin and adipoQ receptor family member IV Progestin and adipoQ receptor family 930 2004-06-23 2016-03-30 2016-10-05 124222 ENSG00000162073 OTTHUMG00000128977 uc002csj.5 NM_152341 "CCDS10485|CCDS66911|CCDS66912|CCDS73814" Q8N4S7 12477932 MGI:1923748 RGD:1309533 PAQR4 614578 +HGNC:29645 PAQR5 progestin and adipoQ receptor family member 5 protein-coding gene gene with protein product Approved 15q23 15q23 "FLJ20190|MPRG" membrane progestin receptor gamma progestin and adipoQ receptor family member V Progestin and adipoQ receptor family 930 2005-05-20 2016-03-30 2016-10-05 54852 ENSG00000137819 OTTHUMG00000133322 uc002arz.3 NM_017705 CCDS10232 Q9NXK6 12574519 MGI:1921340 RGD:1311259 PAQR5 607781 +HGNC:30132 PAQR6 progestin and adipoQ receptor family member 6 protein-coding gene gene with protein product Approved 1q22 01q22 "FLJ22672|PRdelta" progestin and adipoQ receptor family member VI Progestin and adipoQ receptor family 930 2004-06-23 2016-03-30 2016-10-05 79957 ENSG00000160781 OTTHUMG00000017490 uc001fnu.3 AF455045 NM_024897 "CCDS1135|CCDS1136|CCDS60301|CCDS72945|CCDS72946" Q6TCH4 18603275 MGI:1916207 RGD:1584722 PAQR6 614579 +HGNC:23146 PAQR7 progestin and adipoQ receptor family member 7 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "mSR|MPRA" membrane progestin receptor alpha progestin and adipoQ receptor family member VII Progestin and adipoQ receptor family 930 2005-05-20 2016-03-30 2016-10-05 164091 ENSG00000182749 OTTHUMG00000007373 uc001bkx.4 NM_178422 CCDS267 Q86WK9 MGI:1919154 RGD:1563621 PAQR7 607779 +HGNC:15708 PAQR8 progestin and adipoQ receptor family member 8 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 "LMPB1|MPRB" C6orf33 "chromosome 6 open reading frame 33|progestin and adipoQ receptor family member VIII" Progestin and adipoQ receptor family 930 2001-06-01 2005-05-20 2016-03-30 2016-10-05 85315 ENSG00000170915 OTTHUMG00000014846 uc003pao.4 AF347029 NM_133367 CCDS4941 Q8TEZ7 "11676489|12574519" MGI:1921479 RGD:1311710 PAQR8 607780 +HGNC:30131 PAQR9 progestin and adipoQ receptor family member 9 protein-coding gene gene with protein product Approved 3q23 03q23 FLJ41938 progestin and adipoQ receptor family member IX Progestin and adipoQ receptor family 930 2004-06-23 2016-03-30 2016-03-30 344838 ENSG00000188582 OTTHUMG00000159313 uc003evg.5 AY424287 NM_198504 CCDS3128 Q6ZVX9 MGI:1922802 RGD:1311515 PAQR9 614580 +HGNC:50861 PAQR9-AS1 PAQR9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q23 03q23 2014-07-11 2014-07-11 101927832 ENSG00000241570 OTTHUMG00000159316 DB456045 NR_125393 +HGNC:16051 PARD3 par-3 family cell polarity regulator protein-coding gene gene with protein product Approved 10p11.22-p11.21 10p11.22-p11.21 "PAR3|PARD3A|Bazooka|Baz|ASIP|PPP1R118" "atypical PKC isotype-specific interacting protein|par-3 family cell polarity regulator alpha|protein phosphatase 1, regulatory subunit 118" "par-3 (partitioning defective 3, C.elegans) homolog|par-3 partitioning defective 3 homolog (C. elegans)" "Protein phosphatase 1 regulatory subunits|PDZ domain containing" "694|1220" 2001-07-27 2013-08-28 2016-10-11 56288 ENSG00000148498 OTTHUMG00000017948 uc057srn.1 AF252293 NM_019619 "CCDS7178|CCDS53509|CCDS53510|CCDS53511|CCDS53512|CCDS53513|CCDS53514|CCDS53515|CCDS53516" Q8TEW0 10934474 MGI:2135608 RGD:620374 PARD3 606745 +HGNC:44964 PARD3-AS1 PARD3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p11.21 10p11.21 2012-12-20 2012-12-20 100505601 ENSG00000226386 OTTHUMG00000017947 uc031wcl.2 "AI792816|BX089194" NR_108043 +HGNC:14446 PARD3B par-3 family cell polarity regulator beta protein-coding gene gene with protein product Approved 2q33.3 02q33.3 "Par3L|PAR3beta" ALS2CR19 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 19|par-3 partitioning defective 3 homolog B (C. elegans)" PDZ domain containing 1220 2001-01-26 2006-09-28 2013-08-28 2015-08-25 117583 ENSG00000116117 OTTHUMG00000154562 uc002var.2 AB053321 NM_057177 "CCDS42804|CCDS42805|CCDS42806|CCDS77511" Q8TEW8 "11586298|12459187" MGI:1919301 RGD:1584992 PARD3B +HGNC:15943 PARD6A par-6 family cell polarity regulator alpha protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "PAR-6|PAR-6A|TAX40|PAR6alpha|TIP-40" "par-6 (partitioning defective 6, C.elegans) homolog alpha|par-6 partitioning defective 6 homolog alpha (C. elegans)" PDZ domain containing 1220 2001-06-21 2013-08-28 2016-10-05 50855 ENSG00000102981 OTTHUMG00000137534 uc002ets.3 NM_016948 "CCDS10843|CCDS45514" Q9NPB6 "9482110|11260256" MGI:1927223 RGD:1303273 PARD6A 607484 +HGNC:16245 PARD6B par-6 family cell polarity regulator beta protein-coding gene gene with protein product Approved 20q13.13 20q13.13 PAR-6B "par-6 (partitioning defective 6, C.elegans) homolog beta|par-6 partitioning defective 6 homolog beta (C. elegans)" PDZ domain containing 1220 2001-08-01 2013-08-28 2014-11-18 84612 ENSG00000124171 OTTHUMG00000032732 uc002xvo.3 AB044555 NM_032521 CCDS33485 Q9BYG5 11260256 MGI:2135605 RGD:1308205 PARD6B 608975 +HGNC:16076 PARD6G par-6 family cell polarity regulator gamma protein-coding gene gene with protein product Approved 18q23 18q23 "PAR-6G|PAR6gamma" "par-6 (partitioning defective 6, C.elegans) homolog gamma|par-6 partitioning defective 6 homolog gamma (C. elegans)" PDZ domain containing 1220 2001-07-31 2013-08-28 2014-11-18 84552 ENSG00000178184 OTTHUMG00000132922 uc002lny.4 NM_032510 CCDS12022 Q9BYG4 11260256 MGI:2135606 RGD:1305016 PARD6G 608976 +HGNC:44109 PARD6G-AS1 PARD6G antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18q23 18q23 PARD6G antisense RNA 1 (non-protein coding) 2012-06-22 2012-08-15 2012-10-12 100130522 ENSG00000267270 OTTHUMG00000180379 uc010xfo.3 AK056304 NR_028339 +HGNC:8605 PARG poly(ADP-ribose) glycohydrolase protein-coding gene gene with protein product Approved 10q11.23 10q11.23 1998-10-07 2015-11-18 2015-11-18 8505 ENSG00000227345 OTTHUMG00000018201 uc057tfe.1 AF005043 NM_003631 CCDS73130 Q86W56 "9115250|10449915" MGI:1347094 RGD:620387 PARG 603501 3.2.1.143 +HGNC:45008 PARGP1 poly(ADP-ribose) glycohydrolase pseudogene 1 pseudogene pseudogene Approved 10q11.22 10q11.22 2013-01-07 2015-11-18 2015-11-18 728407 ENSG00000239883 OTTHUMG00000018090 NG_032736 PGOHUM00000289837 +HGNC:8607 PARK2 parkin RBR E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 6q26 06q26 "PDJ|AR-JP|parkin" E3 ubiquitin ligase "Parkinson disease (autosomal recessive, juvenile) 2, parkin|parkinson protein 2, E3 ubiquitin protein ligase (parkin)" Parkinson disease associated genes 672 1997-08-18 2013-10-03 2016-10-05 5071 ENSG00000185345 OTTHUMG00000015970 uc003qtx.5 XM_017010908 "CCDS5281|CCDS5282|CCDS5283" O60260 "9560156|9570960" MGI:1355296 RGD:61797 Parkinson's disease Mutation Database|http://grenada.lumc.nl/LOVD2/TPI/home.php?select_db=PARK2 PARK2 602544 124080 +HGNC:8608 PARK3 Parkinson disease 3 (autosomal dominant, Lewy body) phenotype phenotype only Approved 2p13 02p13 Parkinson disease associated genes 672 1998-05-05 2011-07-21 2011-07-21 5072 9500549 602404 +HGNC:16369 PARK7 Parkinsonism associated deglycase protein-coding gene gene with protein product Approved 1p36.23 01p36.23 "DJ-1|DJ1" "Parkinson disease (autosomal recessive, early onset) 7|parkinson protein 7" Parkinson disease associated genes 672 2001-08-07 2016-02-15 2016-02-15 11315 ENSG00000116288 OTTHUMG00000001210 uc057byc.1 D61380 NM_007262 CCDS93 Q99497 "11462174|9070310|25416785" MGI:2135637 RGD:621808 Parkinson's disease Mutation Database|http://grenada.lumc.nl/LOVD2/TPI/home.php?select_db=PARK7 PARK7 602533 124084 C56.002 +HGNC:17833 PARK10 Parkinson disease 10 (susceptibility) phenotype phenotype only Approved 1p32 01p32 AAOPD Parkinson disease 10 Parkinson disease associated genes 672 2001-12-18 2011-07-21 2011-07-21 170534 "12402251|18854859" 606852 +HGNC:17963 PARK11 Parkinson disease 11 (autosomal recessive, early onset) phenotype phenotype only Approved 2q36-q37 02q36-q37 Parkinson disease associated genes 672 2004-07-21 2008-08-11 2011-07-21 2011-07-21 352908 "12638082|19279319" +HGNC:34510 PARK12 Parkinson disease 12 (susceptibility) phenotype phenotype only Approved Xq21-q25 Xq21-q25 Parkinson disease (X-linked) 12 Parkinson disease associated genes 672 2008-08-11 2011-07-21 2011-07-21 677662 12925570 300557 +HGNC:37450 PARK16 Parkinson disease 16 (susceptibility) phenotype phenotype only Approved 1q32 01q32 Parkinson disease associated genes 672 2010-02-09 2011-07-21 2011-07-21 100359403 "19915576|19915575" 613164 +HGNC:18253 PARL presenilin associated rhomboid like protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "PRO2207|PSARL1|RHBDS1" rhomboid 7 homolog 1 (Drosophila) PSARL presenilin associated, rhomboid-like Rhomboid family 926 2003-09-03 2006-02-28 2016-04-04 2016-10-05 55486 ENSG00000175193 OTTHUMG00000156890 uc003fmd.4 AF116692 NM_018622 "CCDS3248|CCDS33897|CCDS82878" Q9H300 MGI:1277152 RGD:1306191 PARL 607858 S54.009 +HGNC:24536 PARM1 prostate androgen-regulated mucin-like protein 1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "DKFZP564O0823|Cipar1|WSC4" "Prostatic androgen-repressed message 1|Castration-induced prostatic apoptosis-related protein 1|WSC4, cell wall integrity and stress response component 4 homolog (S. cerevisiae)" 2009-09-22 2009-09-28 2016-10-05 25849 ENSG00000169116 OTTHUMG00000160827 uc003hih.3 AK022311 NM_015393 CCDS47077 Q6UWI2 "10499539|12772192|18027867" MGI:2443349 RGD:708342 PARM1 +HGNC:8609 PARN poly(A)-specific ribonuclease protein-coding gene gene with protein product Approved 16p13.12 16p13.12 DAN deadenylation nuclease poly(A)-specific ribonuclease (deadenylation nuclease) 1998-07-23 2011-07-07 2016-10-05 5073 ENSG00000140694 OTTHUMG00000173199 uc010uzd.3 AJ005698 NM_002582 "CCDS45419|CCDS45420|CCDS58425" O95453 10640832 MGI:1921358 RGD:1565449 PARN 604212 426776 3.1.13.4 +HGNC:270 PARP1 poly(ADP-ribose) polymerase 1 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 PARP "PPOL|ADPRT" "ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)|poly (ADP-ribose) polymerase family, member 1" "Zinc fingers|Zinc fingers PARP-type|Poly(ADP-ribose) polymerases" "26|94|684" 1986-01-01 2004-08-26 2015-11-06 2016-10-05 142 ENSG00000143799 OTTHUMG00000037556 uc001hqd.5 BC037545 NM_001618 CCDS1554 P09874 10964595 MGI:1340806 RGD:2053 PARP1 173870 objectId:2771 2.4.2.30 +HGNC:275 PARP1P1 poly(ADP-ribose) polymerase 1 pseudogene 1 pseudogene pseudogene Approved 13q34 13q34 "PPOLP1|ADPRTP1" "ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) pseudogene 1|poly(ADP-ribose) polymerase family, member 1 pseudogene 1" 1986-01-01 2004-08-20 2016-03-01 2016-03-01 144 ENSG00000227105 OTTHUMG00000017350 NG_002655 2891139 PGOHUM00000248684 +HGNC:276 PARP1P2 poly(ADP-ribose) polymerase 1 pseudogene 2 pseudogene pseudogene Approved 14q23.2 14q23.2 "PPOLP2|ADPRTP2" "ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase) pseudogene 2|poly(ADP-ribose) polymerase family, member 1 pseudogene 2" 1986-01-01 2004-08-20 2016-03-01 2016-03-01 145 ENSG00000258995 OTTHUMG00000171113 AL137191 NG_002656 PGOHUM00000292693 +HGNC:272 PARP2 poly(ADP-ribose) polymerase 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 ADPRTL2 "ADP-ribosyltransferase (NAD+; poly(ADP-ribose) polymerase)-like 2|poly (ADP-ribose) polymerase family, member 2" Poly(ADP-ribose) polymerases 684 1999-05-24 2004-08-26 2015-11-06 2015-11-06 10038 ENSG00000129484 OTTHUMG00000166106 uc001vxc.4 AF085734 XM_005267247 "CCDS41910|CCDS45077" Q9UGN5 "10329013|18353725" MGI:1341112 RGD:1310568 PARP2 607725 objectId:2772 +HGNC:273 PARP3 poly(ADP-ribose) polymerase family member 3 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "ADPRT3|IRT1|hPARP-3|pADPRT-3" "poly(ADP-ribose) synthetase-3|NAD+ ADP-ribosyltransferase 3|poly(ADP-ribose) polymerase 3" ADPRTL3 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 3 Poly(ADP-ribose) polymerases 684 1999-05-24 2004-08-26 2015-11-06 2015-11-06 10039 ENSG00000041880 OTTHUMG00000156931 uc003dby.3 AF083068 NM_005485.4 "CCDS43097|CCDS46839" Q9Y6F1 10329013 MGI:1891258 RGD:1305189 PARP3 607726 objectId:2864 2.4.2.30 +HGNC:271 PARP4 poly(ADP-ribose) polymerase family member 4 protein-coding gene gene with protein product Approved 13q12.12 13q12.12 "VAULT3|p193|VPARP|VWA5C" von Willebrand factor A domain containing 5C ADPRTL1 ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 Poly(ADP-ribose) polymerases 684 1998-04-20 2004-08-26 2015-11-06 2016-10-05 143 ENSG00000102699 OTTHUMG00000016582 uc001upl.4 AF057160 NM_006437 CCDS9307 Q9UKK3 10644454 MGI:2685589 RGD:1310524 PARP4 607519 +HGNC:42806 PARP4-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:18500 PARP4P1 poly(ADP-ribose) polymerase family member 4 pseudogene 1 pseudogene pseudogene Approved Yq11.23-q12 Yq11.23-q12 PARP4PY1 poly (ADP-ribose) polymerase family, member 4 pseudogene, Y-linked 1 "ADPRTL1P|PARP4P" "ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 1 Y-linked pseudogene|poly (ADP-ribose) polymerase family, member 4 pseudogene|poly(ADP-ribose) polymerase family, member 4 pseudogene 1" 2002-05-22 2010-02-16 2015-11-18 2016-10-11 347613 ENSG00000237917 OTTHUMG00000036812 NG_002802 PGOHUM00000233887 +HGNC:37760 PARP4P2 poly(ADP-ribose) polymerase family member 4 pseudogene 2 pseudogene pseudogene Approved 13q12.11 13q12.11 poly(ADP-ribose) polymerase family, member 4 pseudogene 2 2010-02-16 2015-11-18 2015-11-18 645771 ENSG00000224976 OTTHUMG00000016486 NG_011399 PGOHUM00000248509 +HGNC:274 PARP4P3 poly(ADP-ribose) polymerase family member 4 pseudogene 3 pseudogene pseudogene Approved 22q11.1 22q11.1 ADPRTL4 "ADP-ribosyltransferase (NAD+; poly (ADP-ribose) polymerase)-like 4|poly(ADP-ribose) polymerase family, member 4 pseudogene 3" 1999-10-29 2010-09-29 2015-11-18 2015-11-18 107133524 ENSG00000249263 OTTHUMG00000142831 NG_046684 10591208 PGOHUM00000246200 +HGNC:26921 PARP6 poly(ADP-ribose) polymerase family member 6 protein-coding gene gene with protein product Approved 15q23 15q23 pART17 Poly(ADP-ribose) polymerases 684 2004-08-25 2015-11-06 2016-10-05 56965 ENSG00000137817 OTTHUMG00000133443 uc002auc.4 AL390093 NM_020214 CCDS10241 Q2NL67 15273990 MGI:1914537 RGD:1310937 PARP6 +HGNC:26124 PARP8 poly(ADP-ribose) polymerase family member 8 protein-coding gene gene with protein product Approved 5q11.1 05q11.1 "FLJ21308|pART16" Poly(ADP-ribose) polymerases 684 2004-08-25 2015-11-06 2016-10-05 79668 ENSG00000151883 OTTHUMG00000096969 uc003joo.3 AL834477 NM_024615 "CCDS3954|CCDS54849|CCDS82996" Q8N3A8 15273990 MGI:1098713 RGD:1587384 PARP8 +HGNC:24118 PARP9 poly(ADP-ribose) polymerase family member 9 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "BAL|BAL1" Poly(ADP-ribose) polymerases 684 2004-09-30 2015-11-06 2015-11-06 83666 ENSG00000138496 OTTHUMG00000159522 uc003efh.5 AF307339 NM_031458 "CCDS3014|CCDS54633|CCDS54634" Q8IXQ6 11110709 MGI:1933117 RGD:1307534 PARP9 612065 +HGNC:25895 PARP10 poly(ADP-ribose) polymerase family member 10 protein-coding gene gene with protein product Approved 8q24 08q24 FLJ14464 Poly(ADP-ribose) polymerases 684 2004-08-25 2015-11-06 2015-11-06 84875 ENSG00000178685 OTTHUMG00000165408 uc003zal.5 AK027370 NM_032789 "CCDS34960|CCDS83331" Q53GL7 15273990 MGI:3712326 RGD:7744876 PARP10 609564 +HGNC:1186 PARP11 poly(ADP-ribose) polymerase family member 11 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 C12orf6 chromosome 12 open reading frame 6 Poly(ADP-ribose) polymerases 684 2000-08-24 2004-08-26 2015-11-06 2016-10-05 57097 ENSG00000111224 OTTHUMG00000156442 uc001qml.4 AF263540 XM_011520971 "CCDS8523|CCDS66281" Q9NR21 15273990 MGI:2141505 RGD:1561791 PARP11 616706 +HGNC:21919 PARP12 poly(ADP-ribose) polymerase family member 12 protein-coding gene gene with protein product Approved 7q34 07q34 "FLJ22693|PARP-12|ZC3H1" ZC3HDC1 zinc finger CCCH-type domain containing 1 "Zinc fingers CCCH-type|Poly(ADP-ribose) polymerases" "73|684" 2003-12-10 2005-06-02 2015-11-06 2015-11-06 64761 ENSG00000059378 OTTHUMG00000157315 uc003vvl.2 AL136766 NM_022750 CCDS5857 Q9H0J9 "11230166|12851707" MGI:2143990 RGD:1308628 PARP12 612481 +HGNC:29232 PARP14 poly(ADP-ribose) polymerase family member 14 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "KIAA1268|pART8" Poly(ADP-ribose) polymerases 684 2004-08-25 2015-11-06 2016-10-05 54625 ENSG00000173193 OTTHUMG00000159552 uc003efq.5 AB033094 NM_017554 CCDS46894 Q460N5 15273990 MGI:1919489 RGD:1310490 PARP14 610028 +HGNC:26876 PARP15 poly(ADP-ribose) polymerase family member 15 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "FLJ40597|pART7" Poly(ADP-ribose) polymerases 684 2004-08-25 2015-11-06 2016-10-05 165631 ENSG00000173200 OTTHUMG00000159523 uc003efm.3 AK097916 NM_152615 "CCDS3016|CCDS46893|CCDS77803|CCDS77804" Q460N3 15273990 PARP15 612066 +HGNC:26040 PARP16 poly(ADP-ribose) polymerase family member 16 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "FLJ20509|FLJ25281|pART15" C15orf30 chromosome 15 open reading frame 30 Poly(ADP-ribose) polymerases 684 2004-07-05 2004-08-25 2015-11-06 2016-10-05 54956 ENSG00000138617 OTTHUMG00000133138 uc002aoq.4 AK000516 NM_017851 "CCDS10204|CCDS81897" Q8N5Y8 15273990 MGI:2446133 RGD:1306243 PARP16 +HGNC:26074 PARPBP PARP1 binding protein protein-coding gene gene with protein product Approved 12q23.2 12q23.2 "FLJ20641|PARI" PARP-1 binding protein C12orf48 chromosome 12 open reading frame 48 2006-01-24 2012-01-24 2012-01-24 2016-04-25 55010 ENSG00000185480 uc001tjf.4 AK000648 NM_017915 "CCDS9090|CCDS81728|CCDS81729|CCDS81730" Q9NWS1 20931645 MGI:1922567 RGD:2314264 PARPBP 613687 +HGNC:30563 PARS2 prolyl-tRNA synthetase 2, mitochondrial (putative) protein-coding gene gene with protein product Approved 1p32.3 01p32.3 DKFZp727A071 proline tRNA ligase 2, mitochondrial (putative) Aminoacyl tRNA synthetases, Class II 132 2005-07-05 2007-02-23 2016-10-05 25973 ENSG00000162396 OTTHUMG00000009915 uc001cxy.4 AK025585 NM_152268 CCDS597 Q7L3T8 15779907 MGI:2386296 RGD:1305345 PARS2 612036 6.1.1.15 +HGNC:17263 PART1 prostate androgen-regulated transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 5q12.1 05q12.1 "DKFZP586D0823|NCRNA00206" non-protein coding RNA 206 Long non-coding RNAs 788 2009-09-28 2009-09-28 2014-07-18 25859 ENSG00000152931 OTTHUMG00000162213 uc003jsg.3 AF163475 NR_024617 "10706094|23726844" 604991 +HGNC:50886 PARTICL promoter of MAT2A antisense radiation-induced circulating long non-coding RNA non-coding RNA RNA, long non-coding Approved 2p11.2 02p11.2 PARTICLE Long non-coding RNAs 788 2015-04-24 2015-04-24 100630918 BC009563 NR_038942 25900080 616350 +HGNC:14652 PARVA parvin alpha protein-coding gene gene with protein product Approved 11p15.3 11p15.3 "FLJ12254|FLJ10793" MXRA2 matrix-remodelling associated 2 Parvins 673 2001-04-26 2015-11-20 2016-04-25 55742 ENSG00000197702 OTTHUMG00000165778 uc001mki.5 AF237771 NM_018222 CCDS44541 Q9NVD7 11171322 MGI:1931144 RGD:71021 PARVA 608120 +HGNC:14653 PARVB parvin beta protein-coding gene gene with protein product Approved 22q13.31 22q13.31 CGI-56 affixin Parvins 673 2001-04-26 2015-11-20 2016-10-05 29780 ENSG00000188677 OTTHUMG00000150665 uc003ben.4 AF151814 NM_001003828 "CCDS14056|CCDS46724|CCDS58808|CCDS74874" Q9HBI1 "10810093|11171322" MGI:2153063 RGD:1311485 PARVB 608121 +HGNC:14654 PARVG parvin gamma protein-coding gene gene with protein product Approved 22q13.31 22q13.31 Parvins 673 2001-04-26 2015-11-20 2015-11-20 64098 ENSG00000138964 OTTHUMG00000150473 uc011aqe.4 AF237772 NM_022141 CCDS14057 Q9HBI0 11171322 MGI:2158329 RGD:1597417 PARVG 608122 +HGNC:20686 PASD1 PAS domain containing 1 protein-coding gene gene with protein product Approved Xq28 Xq28 CT63 cancer/testis antigen 63 2004-08-10 2014-11-19 139135 ENSG00000166049 OTTHUMG00000024169 uc004fev.5 AY270020 NM_173493 CCDS35431 Q8IV76 "15122589|15162151" RGD:7496877 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PASD1 PASD1 +HGNC:17270 PASK PAS domain containing serine/threonine kinase protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "PASKIN|KIAA0135|STK37" 2002-01-09 2014-11-18 23178 ENSG00000115687 OTTHUMG00000133392 uc061ull.1 U79240 NM_015148 "CCDS2545|CCDS58758|CCDS58759" Q96RG2 "11688972|11459942|15148392" MGI:2155936 RGD:1306146 PASK 607505 objectId:2139 +HGNC:24664 PATE1 prostate and testis expressed 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 PATE expressed in prostate and testis "PATE family|LY6/PLAUR domain containing" "674|1226" 2008-12-17 2015-09-03 160065 ENSG00000171053 OTTHUMG00000165855 uc001qct.4 AF462605 NM_138294 CCDS8464 Q8WXA2 "11880645|15798027" MGI:4936886 RGD:2319716 PATE1 606861 +HGNC:32249 PATE2 prostate and testis expressed 2 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "UNQ3112|LVLF3112|PATE-M" C11orf38 chromosome 11 open reading frame 38 "PATE family|LY6/PLAUR domain containing" "674|1226" 2005-09-18 2008-12-17 2008-12-17 2015-09-01 399967 ENSG00000196844 OTTHUMG00000165856 uc001qcu.5 AY358105 NM_212555 CCDS8465 Q6UY27 MGI:2685692 RGD:2320100 PATE2 +HGNC:35426 PATE3 prostate and testis expressed 3 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "PATE-DJ|HEL-127" "PATE family|LY6/PLAUR domain containing" "674|1226" 2008-12-17 2015-09-03 100169851 ENSG00000236027 OTTHUMG00000165857 uc009zbs.3 EF426753 NM_001129883 CCDS44764 B3GLJ2 18390568 MGI:4936999 RGD:2320151 PATE3 +HGNC:35427 PATE4 prostate and testis expressed 4 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "FLJ41047|PATE-B" "PATE family|LY6/PLAUR domain containing" "674|1226" 2008-12-17 2015-08-25 399968 ENSG00000237353 OTTHUMG00000165235 uc001qcv.4 AK123042 NM_001144874 CCDS44765 P0C8F1 18390568 MGI:1930790 RGD:1311172 PATE4 +HGNC:28881 PATJ PATJ, crumbs cell polarity complex component protein-coding gene gene with protein product Approved 1p31.3 01p31.3 Cipp "inactivation-no-afterpotential D-like|Pals1-associated tight junction" INADL InaD-like (Drosophila) "PDZ domain containing|Crumbs complex" "1220|1223" 2004-12-23 2016-02-22 2016-02-22 2016-10-05 10207 ENSG00000132849 OTTHUMG00000008560 uc001dab.4 AB044807 NM_170605 CCDS617 Q8NI35 "9280290|11374908" MGI:1277960 RGD:1565362 603199 +HGNC:26721 PATL1 PAT1 homolog 1, processing body mRNA decay factor protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "FLJ36874|Pat1b" protein associated with topoisomerase II homolog 1 (yeast) 2007-10-18 2016-04-29 2016-04-29 219988 ENSG00000166889 OTTHUMG00000167423 uc001noe.6 AK094193 NM_152716 CCDS44613 Q86TB9 17936923 MGI:2147679 RGD:1305514 PATL1 614660 +HGNC:33630 PATL2 PAT1 homolog 2 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 Pat1a protein associated with topoisomerase II homolog 2 (yeast) 2007-10-18 2016-04-29 2016-04-29 197135 ENSG00000229474 OTTHUMG00000171932 uc010uej.3 BC036924 NM_001145112 "CCDS45253|CCDS81873" C9JE40 17936923 MGI:1914828 RGD:1307887 PATL2 614661 +HGNC:13071 PATZ1 POZ/BTB and AT hook containing zinc finger 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "MAZR|dJ400N23|ZBTB19|ZSG|RIAZ|PATZ" ZNF278 "zinc finger protein 278|POZ (BTB) and AT hook containing zinc finger 1" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1999-10-20 2006-09-19 2016-02-10 2016-02-10 23598 ENSG00000100105 OTTHUMG00000151254 uc003akq.4 AL096880 NM_032052 "CCDS13894|CCDS13895|CCDS13896|CCDS46691" Q9HBE1 "10591208|18241078|18401526" MGI:1891832 RGD:1308337 PATZ1 605165 382 +HGNC:49670 PAUPAR PAX6 upstream antisense RNA non-coding RNA RNA, long non-coding Approved 11p13 11p13 Long non-coding RNAs 788 2014-02-01 2014-05-20 103157000 ENSG00000281880 OTTHUMG00000189576 KJ434992 NR_117094 24488179 MGI:5543919 +HGNC:8614 PAWR pro-apoptotic WT1 regulator protein-coding gene gene with protein product Approved 12q21.2 12q21.2 "par-4|PAR4" prostate apoptosis response-4 PRKC, apoptosis, WT1, regulator 1998-06-05 2016-03-10 2016-03-10 5074 ENSG00000177425 OTTHUMG00000170080 uc001syx.4 U63809 NM_002583 CCDS31863 Q96IZ0 "8943350|9790775" MGI:2149961 RGD:69065 PAWR 601936 +HGNC:45201 PAWRP1 pro-apoptotic WT1 regulator pseudogene 1 pseudogene pseudogene Approved 10q23.33 10q23.33 PRKC, apoptosis, WT1, regulator pseudogene 1 2013-03-07 2016-03-10 2016-03-10 100420526 ENSG00000225533 OTTHUMG00000018807 NG_025536 PGOHUM00000261101 +HGNC:45202 PAWRP2 pro-apoptotic WT1 regulator pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 PRKC, apoptosis, WT1, regulator pseudogene 2 2013-03-07 2016-03-10 2016-03-10 100420535 NG_026355 PGOHUM00000261204 +HGNC:8615 PAX1 paired box 1 protein-coding gene gene with protein product Approved 20p11.22 20p11.22 paired box gene 1 Paired boxes 675 1992-05-11 2007-07-12 2015-08-25 5075 ENSG00000125813 OTTHUMG00000032034 uc002wsj.4 NM_006192 "CCDS13146|CCDS74709" P15863 1358810 MGI:97485 RGD:1588548 PAX1 167411 376593 +HGNC:8616 PAX2 paired box 2 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 paired box gene 2 "PRD class homeoboxes and pseudogenes|Paired boxes" "521|675" 1993-06-07 2007-07-12 2015-08-25 5076 ENSG00000075891 OTTHUMG00000018913 uc001kro.4 NM_003990 "CCDS7499|CCDS41561" Q02962 "8431641|7981748" MGI:97486 RGD:1305568 PAX2 167409 8481 124088 +HGNC:8617 PAX3 paired box 3 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 HUP2 WS1 "Waardenburg syndrome 1|paired box gene 3 (Waardenburg syndrome 1)" "PRD class homeoboxes and pseudogenes|Paired boxes" "521|675" 1992-01-14 2007-07-12 2015-09-01 5077 ENSG00000135903 OTTHUMG00000133157 uc002vmv.3 NM_181461 "CCDS2449|CCDS2450|CCDS2451|CCDS42825|CCDS2448|CCDS42826|CCDS46522|CCDS46523" P23760 1347149 MGI:97487 RGD:620431 LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/WS/home.php?select_db=PAX3 PAX3 606597 8482 124090 +HGNC:8618 PAX4 paired box 4 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 MODY9 paired box gene 4 "PRD class homeoboxes and pseudogenes|Paired boxes" "521|675" 1993-04-07 2007-07-12 2015-08-25 5078 ENSG00000106331 OTTHUMG00000157562 uc010lld.1 XM_011516276 CCDS5797 O43316 MGI:97488 RGD:620433 PAX4 167413 8483 201085 +HGNC:8619 PAX5 paired box 5 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 BSAP B-cell lineage specific activator "paired box gene 5 (B-cell lineage specific activator protein)|paired box gene 5 (B-cell lineage specific activator)" "PRD class homeoboxes and pseudogenes|Paired boxes" "521|675" 1992-11-03 2007-07-12 2015-08-25 5079 ENSG00000196092 OTTHUMG00000019907 uc003zzo.3 XM_011517896 "CCDS6607|CCDS65039|CCDS65040|CCDS65041|CCDS65042|CCDS65043|CCDS65044|CCDS65045|CCDS65046|CCDS65047|CCDS65048" Q02548 "1516825|8431641" MGI:97489 RGD:1565236 PAX5 167414 8484 366823 +HGNC:8620 PAX6 paired box 6 protein-coding gene gene with protein product Approved 11p13 11p13 "D11S812E|AN|WAGR" aniridia, keratitis AN2 paired box gene 6 (aniridia, keratitis) "PRD class homeoboxes and pseudogenes|Paired boxes" "521|675" 1986-01-01 2007-07-12 2016-10-12 5080 ENSG00000007372 OTTHUMG00000041447 uc058abq.1 AY707088 NM_001604 "CCDS31451|CCDS31452" P26367 1302030 MGI:97490 RGD:3258 "LOVD|http://lsdb.hgu.mrc.ac.uk/home.php?select_db=PAX6|LRG_720|http://www.lrg-sequence.org/LRG/LRG_720" PAX6 607108 8396 124094 +HGNC:8621 PAX7 paired box 7 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 Hup1 paired box gene 7 "PRD class homeoboxes and pseudogenes|Paired boxes" "521|675" 1992-11-20 2007-07-12 2014-11-18 5081 ENSG00000009709 OTTHUMG00000002433 uc010oct.3 X96743 NM_002584 "CCDS186|CCDS44074|CCDS44075" P23759 "7981748|8431641" MGI:97491 RGD:1564360 PAX7 167410 8485 124100 +HGNC:8622 PAX8 paired box 8 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 paired box gene 8 "PRD class homeoboxes and pseudogenes|Paired boxes" "521|675" 1998-11-16 2007-07-12 2016-10-05 7849 ENSG00000125618 OTTHUMG00000128529 uc010yxt.3 X69699 XM_017004878 "CCDS42735|CCDS42736|CCDS46398|CCDS46399" Q06710 "8431641|7981748" MGI:97492 RGD:620434 PAX8 167415 8486 124103 +HGNC:49271 PAX8-AS1 PAX8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q14.1 02q14.1 2013-10-14 2013-12-06 2013-12-06 2016-10-05 654433 ENSG00000189223 OTTHUMG00000153340 AK130275 NR_015377 27225188 +HGNC:8623 PAX9 paired box 9 protein-coding gene gene with protein product Approved 14q13.3 14q13.3 paired box gene 9 Paired boxes 675 1993-06-07 2007-07-12 2015-08-25 5083 ENSG00000198807 OTTHUMG00000140251 uc001wty.5 AJ238381 NM_006194 CCDS9662 P55771 7981748 MGI:97493 RGD:1560838 PAX9 167416 124105 +HGNC:13579 PAXBP1 PAX3 and PAX7 binding protein 1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "GCFC|fSAP105" "functional spliceosome-associated protein 105|GC-rich sequence DNA-binding factor candidate" "C21orf66|GCFC1" "chromosome 21 open reading frame 66|GC-rich sequence DNA-binding factor 1" 2001-07-27 2013-01-08 2013-01-08 2015-08-25 94104 ENSG00000159086 OTTHUMG00000064980 uc002yqn.3 AF231920 NM_013329 "CCDS13619|CCDS33541" Q9Y5B6 "11707072|22862948" MGI:1914617 RGD:1584739 +HGNC:39603 PAXBP1-AS1 PAXBP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 GCFC1-AS1 "GCFC1 antisense RNA 1 (non-protein coding)|GCFC1 antisense RNA 1" 2011-03-17 2013-01-08 2013-01-08 2014-11-19 100506215 ENSG00000238197 OTTHUMG00000064979 uc002yqk.4 BC038361 NR_038879 +HGNC:50352 PAXBP1P1 PAX3 and PAX7 binding protein 1 pseudogene 1 pseudogene pseudogene Approved 7q36.2 07q36.2 2014-04-17 2014-04-17 106481704 ENSG00000233489 OTTHUMG00000151475 NG_043245 PGOHUM00000233655 +HGNC:8624 PAXIP1 PAX interacting protein 1 protein-coding gene gene with protein product Approved 7q36.2 07q36.2 "CAGF29|CAGF28|TNRC2|PTIP" PAXIP1L "PAX transcription activation domain interacting protein 1 like|PAX interacting (with transcription-activation domain) protein 1" Trinucleotide repeat containing 775 1999-11-25 2005-04-05 2016-03-14 2016-10-05 22976 ENSG00000157212 OTTHUMG00000151322 uc064jnx.1 U80735 NM_007349 CCDS47753 Q6ZW49 9225980 MGI:1890430 RGD:1307547 PAXIP1 608254 +HGNC:27328 PAXIP1-AS1 PAXIP1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 7q36.2 07q36.2 2013-07-23 2013-07-23 202781 ENSG00000273344 BI438440 NR_028090 12477932 +HGNC:48958 PAXIP1-AS2 PAXIP1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 7q36.2 07q36.2 PAXIP1OS PAXIP1 opposite strand 2013-07-23 2014-10-03 2014-10-03 2014-10-03 100132707 ENSG00000214106 OTTHUMG00000151324 NR_024476 +HGNC:8625 PBCRA1 progressive bifocal chorioretinal atrophy 1 phenotype phenotype only Approved 6q 06q "CRAPB|PBCRA" 1999-08-20 2003-07-25 7948 "9719369|9691169" 600790 +HGNC:28790 PBDC1 polysaccharide biosynthesis domain containing 1 protein-coding gene gene with protein product Approved Xq13.3 Xq13.3 MGC874 CXorf26 chromosome X open reading frame 26 2004-06-18 2012-11-28 2012-11-28 2016-10-05 51260 ENSG00000102390 OTTHUMG00000021876 uc004ecl.2 BC001220 NM_016500 "CCDS14432|CCDS75995" Q9BVG4 11042152 MGI:1914933 RGD:1562502 +HGNC:8627 PBG1 pancreatic beta cell glycoprotein 1 other unknown Approved reserved reserved 1997-10-27 2013-03-28 5084 +HGNC:18282 PBK PDZ binding kinase protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "TOPK|FLJ14385|Nori-3|SPK|CT84" "T-LAK cell-originated protein kinase|cancer/testis antigen 84" 2005-01-20 2016-10-05 55872 ENSG00000168078 OTTHUMG00000102113 uc003xgi.5 AB027249 NM_018492 "CCDS6063|CCDS64858" Q96KB5 "10781613|10779557" MGI:1289156 RGD:1309565 PBK 611210 objectId:2140 +HGNC:23301 PBLD phenazine biosynthesis like protein domain containing protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "MAWBP|MAWDBP|FLJ14767" phenazine biosynthesis-like protein domain containing 2006-11-27 2016-04-05 2016-04-05 64081 ENSG00000108187 OTTHUMG00000073949 uc001jns.1 AK027673 NM_022129 "CCDS7277|CCDS44413" P30039 11355021 MGI:1915621 RGD:621263 PBLD 612189 +HGNC:21079 PBOV1 prostate and breast cancer overexpressed 1 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "UC28|UROC28" 2003-05-20 2014-11-19 59351 ENSG00000254440 OTTHUMG00000167040 uc003qhv.5 AF189269 NM_021635 CCDS5190 Q9GZY1 "12553037|11156405" PBOV1 605669 +HGNC:30064 PBRM1 polybromo 1 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "BAF180|PB1" 2007-03-29 2016-10-05 55193 ENSG00000163939 OTTHUMG00000152663 uc003des.3 BC015323 NM_018165 CCDS43099 Q86U86 "11078522|11483580" MGI:1923998 RGD:1565549 PBRM1 606083 434716 objectId:2738 +HGNC:8632 PBX1 PBX homeobox 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "pre-B-cell leukemia transcription factor 1|pre-B-cell leukemia homeobox 1" TALE class homeoboxes and pseudogenes 526 1990-09-10 2016-05-17 2016-05-17 5087 ENSG00000185630 OTTHUMG00000034307 uc001gct.4 M86546 NM_002585 "CCDS1246|CCDS55654|CCDS55653" P40424 MGI:97495 RGD:1308213 PBX1 176310 8487 171647 +HGNC:8633 PBX2 PBX homeobox 2 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "G17|HOX12|PBX2MHC" "pre-B-cell leukemia transcription factor 2|pre-B-cell leukemia homeobox 2" TALE class homeoboxes and pseudogenes 526 1994-12-13 2016-05-17 2016-05-17 5089 ENSG00000204304 OTTHUMG00000031116 uc003oav.2 NM_002586 CCDS4748 P40425 7835890 MGI:1341793 RGD:1303084 PBX2 176311 8413 +HGNC:8635 PBX2P1 PBX homeobox 2 pseudogene 1 pseudogene pseudogene Approved 3q24 03q24 "PBX2|PBXP1" "pre-B-cell leukemia transcription factor pseudogene 1|pre-B-cell leukemia homeobox 2 pseudogene 1" TALE class homeoboxes and pseudogenes 526 1990-09-10 2007-01-30 2016-05-17 2016-05-17 5088 ENSG00000244171 OTTHUMG00000159350 NG_002434 1682799 8594 +HGNC:8634 PBX3 PBX homeobox 3 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "pre-B-cell leukemia transcription factor 3|pre-B-cell leukemia homeobox 3" TALE class homeoboxes and pseudogenes 526 1990-09-10 2016-05-17 2016-05-17 5090 ENSG00000167081 OTTHUMG00000020684 uc004bqb.4 XM_017014786 "CCDS6865|CCDS48021|CCDS83416" P40426 1682799 MGI:97496 RGD:1307198 PBX3 176312 8488 +HGNC:13403 PBX4 PBX homeobox 4 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "pre-B-cell leukemia transcription factor 4|pre-B-cell leukemia homeobox 4" TALE class homeoboxes and pseudogenes 526 2001-03-14 2016-05-17 2016-05-17 80714 ENSG00000105717 OTTHUMG00000172310 uc002nmy.4 AJ300182 XM_011528320 CCDS12406 Q9BYU1 MGI:1931321 RGD:1305100 PBX4 608127 8543 +HGNC:21199 PBXIP1 PBX homeobox interacting protein 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 HPIP "pre-B-cell leukemia transcription factor interacting protein 1|pre-B-cell leukemia homeobox interacting protein 1" 2003-05-28 2016-05-17 2016-10-05 57326 ENSG00000163346 OTTHUMG00000037369 uc001ffr.4 AF221521 NM_020524 "CCDS1074|CCDS81382" Q96AQ6 "7505766|10825160" MGI:2441670 RGD:1305180 PBXIP1 +HGNC:8636 PC pyruvate carboxylase protein-coding gene gene with protein product Approved 11q13.2 11q13.2 PCB 1991-09-13 2016-10-05 5091 ENSG00000173599 OTTHUMG00000167099 uc001ojp.2 U04641 NM_001040716 CCDS8152 P11498 6548474 MGI:97520 RGD:3262 PC 608786 124107 objectId:1262 6.4.1.1 +HGNC:8637 PCA3 prostate cancer associated 3 (non-protein coding) non-coding RNA RNA, long non-coding Approved 9q21.2 09q21.2 "DD3|NCRNA00019|PCAT3" "non-protein coding RNA 19|prostate cancer associated transcript 3 (non-protein coding)" "prostate cancer antigen 3|prostate cancer antigen 3 (non-protein coding)" Long non-coding RNAs 788 2000-06-08 2014-01-21 2015-07-31 50652 ENSG00000225937 OTTHUMG00000020046 uc004akm.3 AF103907 NR_015342 "10606244|23130941|26080435" 604845 +HGNC:8645 PCAP predisposing for prostate cancer phenotype phenotype only Approved 1q42.2-q43 01q42.2-q43 "HPC2|HPC8" 1998-10-12 2011-02-10 7834 9585607 602759 +HGNC:43022 PCAT1 prostate cancer associated transcript 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "PCAT-1|PCA1" Long non-coding RNAs 788 2011-10-04 2013-05-16 100750225 ENSG00000253438 OTTHUMG00000165061 uc064qdc.1 HQ605084 NR_045262 "21804560|23640607" 616043 +HGNC:45089 PCAT2 prostate cancer associated transcript 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "PCA2|TCONS_00015167" 2013-04-24 2014-06-20 103164619 ENSG00000253264 OTTHUMG00000165062 BU852210 NR_119373 +HGNC:24853 PCAT4 prostate cancer associated transcript 4 (non-protein coding) non-coding RNA RNA, long non-coding Approved 4q21.21 04q21.21 "GDEP|PCAN1|PCA4" "prostate cancer gene 1|gene differentially expressed in prostate" Long non-coding RNAs 788 2013-05-11 2013-05-16 2013-05-16 2014-07-18 118425 ENSG00000251321 OTTHUMG00000161746 AF388200 NR_026555 "11536302|15299187|18454873" 609717 +HGNC:48665 PCAT5 prostate cancer associated transcript 5 (non-protein coding) non-coding RNA RNA, long non-coding Approved 10p11.21 10p11.21 TPCAT-10-36067 LINC01452 long intergenic non-protein coding RNA 1452 Long non-coding RNAs 788 2013-12-06 2015-05-27 2015-05-27 2015-08-21 102578074 ENSG00000280719 OTTHUMG00000189575 KF154780 NR_110138 26282172 +HGNC:43714 PCAT6 prostate cancer associated transcript 6 (non-protein coding) non-coding RNA RNA, long non-coding Approved 1q32.1 01q32.1 "ncRNA-a2|PCAN-R1|KDM5BAS1|onco-lncRNA-96" prostate cancer-associated noncoding RNA 1 KDM5B-AS1 KDM5B antisense RNA 1 (head to head) Long non-coding RNAs 788 2012-02-02 2013-06-14 2013-06-14 2015-07-29 100506696 ENSG00000228288 OTTHUMG00000041399 "BI962506|AI806248" NR_046325 "20887892|23728290" KDM5BAS1 +HGNC:48824 PCAT7 prostate cancer associated transcript 7 (non-protein coding) non-coding RNA RNA, long non-coding Approved 9q22.32 09q22.32 PCAN-R2 prostate cancer-associated noncoding RNA 2 Long non-coding RNAs 788 2013-06-14 2014-07-30 101928099 ENSG00000231806 OTTHUMG00000020270 NR_121566 23728290 +HGNC:48977 PCAT14 prostate cancer associated transcript 14 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q11.23 22q11.23 Long non-coding RNAs 788 2013-08-16 2014-07-18 101978785 ENSG00000280623 OTTHUMG00000189569 HQ605085 NR_109832 21804560 +HGNC:49211 PCAT18 prostate cancer associated transcript 18 (non-protein coding) non-coding RNA RNA, long non-coding Approved 18q11.2 18q11.2 LINC01092 long intergenic non-protein coding RNA 1092 Long non-coding RNAs 788 2014-01-20 2014-07-18 728606 ENSG00000265369 OTTHUMG00000179450 NR_024259 24519926 +HGNC:49593 PCAT19 prostate cancer associated transcript 19 (non-protein coding) non-coding RNA RNA, long non-coding Approved 19q13.2 19q13.2 LINC01190 long intergenic non-protein coding RNA 1190 LOC100505495 2014-01-20 2015-05-21 100505495 ENSG00000267107 OTTHUMG00000182344 BC070102 NR_040109 24497837 +HGNC:50895 PCAT29 prostate cancer associated transcript 29 (non-protein coding) non-coding RNA RNA, long non-coding Approved 15q23 15q23 Long non-coding RNAs 788 2014-07-14 2015-02-26 104472713 ENSG00000259641 OTTHUMG00000172099 NR_126437 25030374 616273 +HGNC:8646 PCBD1 pterin-4 alpha-carbinolamine dehydratase 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 PCD "Pterin-4a-carbinolamine dehydratase (dimerization cofactor of hepatic nuclear factor 1-alpha)|pterin-4-alpha carbinolamine dehydratase|dimerizing cofactor for HNF1" "DCOH|PCBD" "6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1)|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1)|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha" 1993-06-08 2005-02-11 2016-01-27 2016-10-05 5092 ENSG00000166228 OTTHUMG00000018417 uc001jrn.3 BC006324 NM_000281 CCDS31217 P61457 8486378 MGI:94873 RGD:3263 BIOMDBdb: Database of Mutations Causing BH4 Deficiencies and other PND|http://www.biopku.org/home/biomdb.asp PCBD1 126090 124110 4.2.1.96 +HGNC:24474 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "DCOHM|DCOH2" "6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2|pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2" 2005-02-08 2016-01-27 2016-01-27 84105 ENSG00000132570 OTTHUMG00000163070 uc032vlp.1 AF499009 NM_032151 CCDS43364 Q9H0N5 "15182178|11980910" MGI:1919812 RGD:1590239 PCBD2 609836 4.2.1.96 +HGNC:8647 PCBP1 poly(rC) binding protein 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "HNRPE1|hnRNP-E1|HNRPX|hnRNP-X" heterogeneous nuclear ribonucleoprotein E1 poly(rC)-binding protein 1 1996-06-07 2001-11-28 2016-10-05 5093 ENSG00000169564 OTTHUMG00000129645 uc002sgf.4 NM_006196 CCDS1898 Q15365 8833161 MGI:1345635 RGD:1561319 PCBP1 601209 +HGNC:42948 PCBP1-AS1 PCBP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p13.3 02p13.3 PCBP1 antisense RNA 1 (non-protein coding) 2011-09-08 2012-08-15 2012-10-12 400960 ENSG00000179818 OTTHUMG00000153728 uc061kby.1 NR_033872 +HGNC:8648 PCBP2 poly(rC) binding protein 2 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "HNRPE2|hnRNP-E2|HNRNPE2" heterogenous nuclear ribonucleoprotein E2 poly(rC)-binding protein 2 1996-06-07 2001-11-28 2015-09-03 5094 ENSG00000197111 OTTHUMG00000169439 uc001sdb.5 BC035420 NM_005016 "CCDS8859|CCDS44900|CCDS44901|CCDS44902|CCDS44903|CCDS44904|CCDS55830" Q15366 8833161 MGI:108202 RGD:1309626 PCBP2 601210 +HGNC:49150 PCBP2-OT1 PCBP2 overlapping transcript 1 non-coding RNA RNA, long non-coding Approved 12q13.13 12q13.13 TUC338 PCBP2 overlapping transcript 1 (non-protein coding) 2013-09-16 2014-06-02 2016-07-20 102157401 ENSG00000282977 OTTHUMG00000189729 KF041153 NR_109828 21187392 +HGNC:8649 PCBP2P1 poly(rC) binding protein 2 pseudogene 1 pseudogene pseudogene Approved 21q22.2 21q22.2 poly(rC)-binding protein 2, pseudogene 1 2000-05-23 2010-09-24 2016-10-05 101060045 ENSG00000235701 OTTHUMG00000066029 NG_000916 PGOHUM00000239084 +HGNC:8650 PCBP2P2 poly(rC) binding protein 2 pseudogene 2 pseudogene pseudogene Approved 8q21-q22 08q21-q22 poly(rC)-binding protein 2, pseudogene 2 2000-08-31 2010-09-24 2014-11-19 286157 NG_008071 10936052 PGOHUM00000249392 +HGNC:39032 PCBP2P3 poly(rC) binding protein 2 pseudogene 3 pseudogene pseudogene Approved 5q14.3 05q14.3 2010-09-24 2014-11-19 100131236 ENSG00000248826 OTTHUMG00000162612 NG_021857 PGOHUM00000235309 +HGNC:8651 PCBP3 poly(rC) binding protein 3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 poly(rC)-binding protein 3 2000-05-23 2001-11-28 2015-09-03 54039 ENSG00000183570 OTTHUMG00000090399 uc002zhq.3 AF176329 NM_020528 "CCDS42974|CCDS46652" P57721 10936052 MGI:1890470 RGD:1307430 PCBP3 608502 +HGNC:33548 PCBP3-OT1 PCBP3 overlapping transcript 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 FLJ44028 PCBP3OT "poly(rC) binding protein 3 overlapping transcript|PCBP3 overlapping transcript (non-protein coding)" 2007-07-26 2011-08-19 2014-06-02 2014-06-02 100113383 ENSG00000280604 OTTHUMG00000189529 uc062axn.1 AK126016 17525332 +HGNC:8652 PCBP4 poly(rC) binding protein 4 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "MCG10|LIP4" "RNA binding protein MCG10|LYST-interacting protein|alphaCP-4 protein" poly(rC)-binding protein 4 2000-08-31 2001-11-28 2016-10-05 57060 ENSG00000090097 OTTHUMG00000157366 uc003dch.3 AF176330 NM_020418 "CCDS2839|CCDS2840" P57723 10936052 MGI:1890471 RGD:1307910 PCBP4 608503 +HGNC:8653 PCCA propionyl-CoA carboxylase alpha subunit protein-coding gene gene with protein product Approved 13q32.3 13q32.3 propionyl Coenzyme A carboxylase, alpha polypeptide 1986-01-01 2015-11-11 2016-10-05 5095 ENSG00000175198 OTTHUMG00000017284 uc001voo.4 X14608 XM_017020605 "CCDS9496|CCDS45065|CCDS53878" P05165 1427880 MGI:97499 RGD:3264 Propionyl CoA Carboxylase Page|http://cbs.lf1.cuni.cz/pcc/pccmain.htm PCCA 232000 124115 objectId:1266 6.4.1.3 +HGNC:39901 PCCA-AS1 PCCA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 PCCA antisense RNA 1 (non-protein coding) 2011-04-08 2012-08-15 2014-11-19 100885777 ENSG00000234650 OTTHUMG00000017286 uc058yan.1 NR_047686 +HGNC:8654 PCCB propionyl-CoA carboxylase beta subunit protein-coding gene gene with protein product Approved 3q22.3 03q22.3 propionyl Coenzyme A carboxylase, beta polypeptide 1986-01-01 2015-11-11 2016-10-05 5096 ENSG00000114054 OTTHUMG00000159792 uc003eqy.3 NM_000532 "CCDS3089|CCDS54643" P05166 2895916 MGI:1914154 RGD:3265 Propionyl CoA Carboxylase Page|http://cbs.lf1.cuni.cz/pcc/pccmain.htm PCCB 232050 124117 objectId:1267 6.4.1.3 +HGNC:8655 PCDH1 protocadherin 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 pc42 protocadherin 1 (cadherin-like 1) Non-clustered protocadherins 21 1994-12-12 2007-02-12 2015-08-26 5097 ENSG00000156453 OTTHUMG00000129661 uc003llp.4 AK075233 NM_032420 "CCDS4267|CCDS43375" Q08174 8508762 MGI:104692 RGD:1308490 PCDH1 603626 +HGNC:8659 PCDH7 protocadherin 7 protein-coding gene gene with protein product Approved 4p15 04p15 "BH-Pcdh|PPP1R120" protein phosphatase 1, regulatory subunit 120 BH-protocadherin (brain-heart) "Non-clustered protocadherins|Protein phosphatase 1 regulatory subunits" "21|694" 1997-10-30 2007-02-12 2014-11-18 5099 ENSG00000169851 OTTHUMG00000160364 uc003gsk.2 AB006755 "NM_032457|NM_002589" "CCDS33971|CCDS75116" O60245 9615233 MGI:1860487 RGD:1303209 PCDH7 602988 +HGNC:8660 PCDH8 protocadherin 8 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "PAPC|ARCADLIN" Non-clustered protocadherins 21 1998-04-21 2016-10-05 5100 ENSG00000136099 OTTHUMG00000016979 uc001vhi.4 AF061573 NM_002590 "CCDS9438|CCDS9439" O95206 "9787079|9315676" MGI:1306800 RGD:69350 PCDH8 603580 +HGNC:39937 PCDH8P1 protocadherin 8 pseudogene 1 pseudogene pseudogene Approved 13q14.3 13q14.3 2011-04-13 2011-04-13 100133285 ENSG00000225510 OTTHUMG00000016982 NG_011534 PGOHUM00000248601 +HGNC:8661 PCDH9 protocadherin 9 protein-coding gene gene with protein product Approved 13q21.32 13q21.32 Non-clustered protocadherins 21 1998-04-21 2015-08-26 5101 ENSG00000184226 OTTHUMG00000017040 uc001vik.4 AF169692 NM_203487 "CCDS9443|CCDS9444|CCDS81769|CCDS81770" Q9HC56 9787079 MGI:1306801 RGD:1306348 PCDH9 603581 +HGNC:39897 PCDH9-AS1 PCDH9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q21.32 13q21.32 PCDH9 antisense RNA 1 (non-protein coding) 2011-04-08 2012-08-15 2014-11-19 100874065 ENSG00000234527 OTTHUMG00000017034 uc058xjt.1 +HGNC:39896 PCDH9-AS2 PCDH9 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 13q21.32 13q21.32 PCDH9 antisense RNA 2 (non-protein coding) 2011-04-08 2012-08-15 2014-11-19 100874064 ENSG00000228842 OTTHUMG00000017037 uc031qmb.1 NR_046527 +HGNC:40427 PCDH9-AS3 PCDH9 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 13q21.32 13q21.32 PCDH9 antisense RNA 3 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874086 ENSG00000225263 OTTHUMG00000017038 uc031qmc.2 NR_046636 +HGNC:40428 PCDH9-AS4 PCDH9 antisense RNA 4 non-coding RNA RNA, long non-coding Approved 13q21.32 13q21.32 PCDH9 antisense RNA 4 (non-protein coding) 2011-05-18 2012-08-15 2014-11-19 100874087 ENSG00000233840 OTTHUMG00000017036 uc032ais.2 NR_046637 +HGNC:13404 PCDH10 protocadherin 10 protein-coding gene gene with protein product Approved 4q28.3 04q28.3 "OL-PCDH|KIAA1400" Non-clustered protocadherins 21 2001-06-25 2014-11-19 57575 ENSG00000138650 OTTHUMG00000161301 uc003iha.4 AB037821 NM_032961 "CCDS34063|CCDS75192" Q9P2E7 10835267 MGI:1338042 RGD:1565811 PCDH10 608286 +HGNC:8656 PCDH11X protocadherin 11 X-linked protein-coding gene gene with protein product Approved Xq21.31 Xq21.31 "PCDH-X|PCDHX|PPP1R119" protein phosphatase 1, regulatory subunit 119 PCDH11 protocadherin 11 "Non-clustered protocadherins|Protein phosphatase 1 regulatory subunits" "21|694" 2000-02-17 2002-05-24 2002-05-22 2016-10-05 27328 ENSG00000102290 OTTHUMG00000021965 uc004efk.3 AB026187 NM_032969 "CCDS14461|CCDS14462|CCDS55458|CCDS55459|CCDS55460|CCDS55461" Q9BZA7 10644456 MGI:2442849 RGD:1562864 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PCDH11X PCDH11X 300246 +HGNC:15813 PCDH11Y protocadherin 11 Y-linked protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 PCDHY PCDH22 protocadherin 22 Non-clustered protocadherins 21 2001-06-15 2002-05-24 2002-05-22 2015-09-08 83259 ENSG00000099715 OTTHUMG00000035105 uc004fqo.5 AF332217 NM_032973 "CCDS14776|CCDS14777|CCDS76066" Q9BZA8 "10644456|11003707" PCDH11Y 400022 +HGNC:8657 PCDH12 protocadherin 12 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 VE-cadherin-2 Non-clustered protocadherins 21 2000-06-28 2015-08-25 51294 ENSG00000113555 OTTHUMG00000129658 uc003llx.4 AF231025 NM_016580 CCDS4269 Q9NPG4 "10716726|10380929" MGI:1855700 RGD:619917 PCDH12 605622 +HGNC:14674 PCDH15 protocadherin related 15 protein-coding gene gene with protein product Approved 10q21.1 10q21.1 CDHR15 cadherin-related family member 15 "USH1F|DFNB23" "deafness, autosomal recessive 23|protocadherin 15" Cadherin related 24 2001-02-27 2016-06-08 2016-06-08 65217 ENSG00000150275 OTTHUMG00000018259 uc057tid.1 AY029205 NM_033056 "CCDS7248|CCDS44400|CCDS44401|CCDS44403|CCDS44404|CCDS73134|CCDS73135|CCDS73136|CCDS73137|CCDS73138" Q96QU1 "11398101|14570705" MGI:1891428 RGD:1590969 "Mutations of the Protocadherin 15 Gene|http://www.retina-international.org/files/sci-news/pcdhmut.htm|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=PCDH15" PCDH15 605514 124119 +HGNC:14267 PCDH17 protocadherin 17 protein-coding gene gene with protein product Approved 13q21.1 13q21.1 "PCDH68|PCH68" Non-clustered protocadherins 21 2000-12-19 2015-08-26 27253 ENSG00000118946 OTTHUMG00000016992 uc001vhq.2 AF029343 NM_001040429 CCDS31986 O14917 10835267 MGI:2684924 RGD:1304753 PCDH17 611760 +HGNC:14268 PCDH18 protocadherin 18 protein-coding gene gene with protein product Approved 4q28.3 04q28.3 "KIAA1562|PCDH68L" Non-clustered protocadherins 21 2000-12-19 2015-08-26 54510 ENSG00000189184 OTTHUMG00000161348 uc003ihe.5 AL137471 NM_019035 "CCDS34064|CCDS75193" Q9HCL0 "10835267|11549318" MGI:1920423 RGD:1305870 PCDH18 608287 +HGNC:14270 PCDH19 protocadherin 19 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "KIAA1313|EIEE9" EFMR epilepsy, female restricted, with mental retardation (Juberg-Hellman syndrome) Non-clustered protocadherins 21 2001-02-02 2015-08-26 57526 ENSG00000165194 OTTHUMG00000022000 uc004efx.5 AB037734 NM_020766 "CCDS43976|CCDS48141|CCDS55462" Q8TAB3 "11549318|18469813|19752159" MGI:2685563 RGD:1565392 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PCDH19 PCDH19 300460 168339 +HGNC:14257 PCDH20 protocadherin 20 protein-coding gene gene with protein product Approved 13q21.2 13q21.2 "PCDH13|FLJ22218" Non-clustered protocadherins 21 2000-12-14 2016-10-05 64881 ENSG00000280165 OTTHUMG00000017012 uc001vid.5 AF169693 NM_022843 CCDS9442 Q8N6Y1 MGI:2443376 RGD:1306297 PCDH20 614449 +HGNC:8663 PCDHA1 protocadherin alpha 1 other complex locus constituent Approved 5q31 05q31 KIAA0345-like 13 Clustered protocadherins 20 2000-06-28 2014-11-19 56147 ENSG00000204970 OTTHUMG00000163368 uc003lhb.4 AF152479 NM_018900 "CCDS54912|CCDS54913" Q9Y5I3 10380929 MGI:2150982 RGD:7632293 PCDHA1 606307 +HGNC:8668 PCDHA2 protocadherin alpha 2 other complex locus constituent Approved 5q31 05q31 KIAA0345-like 12 Clustered protocadherins 20 2000-06-28 2014-11-18 56146 ENSG00000204969 OTTHUMG00000163363 uc003lhd.3 AF152480 NM_018905 "CCDS54914|CCDS64269" Q9Y5H9 10380929 MGI:2681880 RGD:735182 PCDHA2 606308 +HGNC:8669 PCDHA3 protocadherin alpha 3 other complex locus constituent Approved 5q31 05q31 PCDH-ALPHA3 KIAA0345-like 11 Clustered protocadherins 20 2000-06-28 2014-11-19 56145 ENSG00000255408 OTTHUMG00000163357 uc003lhf.2 AF152481 NM_018906 CCDS54915 Q9Y5H8 10380929 MGI:2447313 RGD:620336 PCDHA3 606309 +HGNC:8670 PCDHA4 protocadherin alpha 4 other complex locus constituent Approved 5q31 05q31 "CNR1|CRNR1|PCDH-ALPHA4|CNRN1" ortholog of mouse CNR1, KIAA0345-like 10 Clustered protocadherins 20 2000-06-28 2014-11-19 56144 ENSG00000204967 OTTHUMG00000163360 uc003lhi.4 AF152482 NM_018907 CCDS54916 Q9UN74 "10380929|10662547" MGI:1298406 RGD:620337 PCDHA4 606310 +HGNC:8671 PCDHA5 protocadherin alpha 5 other complex locus constituent Approved 5q31 05q31 "CNR6|CRNR6|CNRN6|PCDH-ALPHA5" "ortholog of mouse CNR6|KIAA0345-like 9" CNRS6 Clustered protocadherins 20 2000-06-28 2014-11-18 56143 ENSG00000204965 OTTHUMG00000163367 uc003lhl.2 AF152483 NM_018908 CCDS54917 Q9Y5H7 "10380929|10662547" MGI:1298371 RGD:735200 PCDHA5 606311 +HGNC:8672 PCDHA6 protocadherin alpha 6 other complex locus constituent Approved 5q31.3 05q31.3 "CNR2|CRNR2|PCDH-ALPHA6" KIAA0345-like 8 CNRS2 Clustered protocadherins 20 2000-06-28 2016-10-05 56142 ENSG00000081842 OTTHUMG00000163353 uc003lho.4 AF152484 NM_018909 "CCDS47281|CCDS47282" Q9UN73 "10380929|10662547" MGI:1298367 RGD:735165 PCDHA6 606312 +HGNC:8673 PCDHA7 protocadherin alpha 7 other complex locus constituent Approved 5q31 05q31 "CNR4|CRNR4" "KIAA0345-like 7|ortholog to mouse CNR4" CNRS4 Clustered protocadherins 20 2000-06-28 2014-11-18 56141 ENSG00000204963 OTTHUMG00000163371 uc003lhq.2 AF152485 NM_018910 CCDS54918 Q9UN72 "10380929|10662547" MGI:1298369 RGD:735055 PCDHA7 606313 +HGNC:8674 PCDHA8 protocadherin alpha 8 other complex locus constituent Approved 5q31 05q31 KIAA0345-like 6 Clustered protocadherins 20 2000-06-28 2014-11-19 56140 ENSG00000204962 OTTHUMG00000163354 uc003lhs.2 AF152486 NM_018911 CCDS54919 Q9Y5H6 10380929 RGD:620338 PCDHA8 606314 +HGNC:8675 PCDHA9 protocadherin alpha 9 other complex locus constituent Approved 5q31 05q31 "KIAA0345|PCDH-ALPHA9" KIAA0345-like 5 Clustered protocadherins 20 2000-06-28 2014-11-18 9752 ENSG00000204961 OTTHUMG00000163373 uc003lhu.3 AF152487 NM_031857 CCDS54920 Q9Y5H5 10380929 MGI:2681879 RGD:735153 PCDHA9 606315 +HGNC:8664 PCDHA10 protocadherin alpha 10 other complex locus constituent Approved 5q31.3 05q31.3 "CNR8|CRNR8|CNRN8|PCDH-ALPHA10" "KIAA0345-like 4|ortholog to mouse CNR8" CNRS8 Clustered protocadherins 20 2000-06-28 2016-10-05 56139 ENSG00000250120 OTTHUMG00000163372 uc003lhx.4 AF152475 NM_018901 "CCDS34255|CCDS54921|CCDS75325" Q9Y5I2 10380929 MGI:2447322 RGD:620749 PCDHA10 606316 +HGNC:8665 PCDHA11 protocadherin alpha 11 other complex locus constituent Approved 5q31.3 05q31.3 "CNR7|CRNR7|CNRN7|PCDH-ALPHA11" "KIAA0345-like 3|ortholog of mouse CNR7" CNRS7 Clustered protocadherins 20 2000-06-28 2016-10-05 56138 ENSG00000249158 OTTHUMG00000163369 uc003lia.4 AF152476 NM_018902 "CCDS47284|CCDS75326" Q9Y5I1 "10380929|10662547" MGI:1298372 RGD:1594480 PCDHA11 606317 +HGNC:8666 PCDHA12 protocadherin alpha 12 other complex locus constituent Approved 5q31.3 05q31.3 PCDH-ALPHA12 KIAA0345-like 2 Clustered protocadherins 20 2000-06-28 2016-10-05 56137 ENSG00000251664 OTTHUMG00000163366 uc003lic.4 AF152477 NM_018903 "CCDS47285|CCDS75327" Q9UN75 10380929 MGI:1298408 RGD:620750 PCDHA12 606318 +HGNC:8667 PCDHA13 protocadherin alpha 13 other complex locus constituent Approved 5q31.3 05q31.3 "CNR5|CRNR5|CNRN5|PCDH-ALPHA13" "KIAA0345-like 1|ortholog of mouse CNR5" CNRS5 Clustered protocadherins 20 2000-06-28 2016-10-05 56136 ENSG00000239389 OTTHUMG00000129614 uc003lie.2 AF152478 NM_018904 CCDS4240 Q9Y5I0 "10380929|10662547" MGI:1298370 RGD:620751 PCDHA13 606319 +HGNC:2163 PCDHA14 protocadherin alpha 14 pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 "CNR3|CRNR3|PCDH-PSI4" CNRS3 protocadherin gamma subfamily A 14 pseudogene Clustered protocadherins 20 1999-11-26 2003-09-24 2012-02-29 26307 ENSG00000249504 OTTHUMG00000163355 AY013875 NG_001247 "10662547|11230163" +HGNC:8662 PCDHA@ protocadherin alpha cluster, complex locus protein-coding gene gene with protein product Approved 5q31 05q31 CNR1 CNRS1 protocadherin alpha cluster Clustered protocadherins 20 1999-11-26 2010-11-26 2010-11-26 56117 NG_000016 "10662547|10380929" +HGNC:8676 PCDHAC1 protocadherin alpha subfamily C, 1 other complex locus constituent Approved 5q31.3 05q31.3 PCDH-ALPHA-C1 Clustered protocadherins 20 2000-06-28 2016-10-05 56135 ENSG00000248383 OTTHUMG00000129603 uc003lih.3 AF152473 NM_018898 CCDS4241 Q9H158 10380929 MGI:1891442 PCDHAC1 606320 +HGNC:8677 PCDHAC2 protocadherin alpha subfamily C, 2 other complex locus constituent Approved 5q31.3 05q31.3 PCDH-ALPHA-C2 Clustered protocadherins 20 2000-06-28 2016-10-05 56134 ENSG00000243232 OTTHUMG00000129607 uc003lii.4 AF152474 NM_018899 CCDS4242 Q9Y5I4 10380929 MGI:1891443 RGD:735216 PCDHAC2 606321 +HGNC:8678 PCDHACT protocadherin alpha constant other complex locus constituent Approved 5q31 05q31 PCDHAC Clustered protocadherins 20 2000-06-28 2010-11-26 56119 NG_000016 "10380929|10662547" +HGNC:8680 PCDHB1 protocadherin beta 1 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA1 Clustered protocadherins 20 2000-06-28 2016-10-05 29930 ENSG00000171815 OTTHUMG00000129627 uc003lik.3 AF152488 NM_013340 CCDS4243 Q9Y5F3 10380929 MGI:2136730 RGD:1308760 PCDHB1 606327 +HGNC:8687 PCDHB2 protocadherin beta 2 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA2 Clustered protocadherins 20 2000-06-28 2016-10-05 56133 ENSG00000112852 OTTHUMG00000129606 uc003lil.5 AF152495 NM_018936 CCDS4244 Q9Y5E7 10380929 MGI:2136735 RGD:1563132 PCDHB2 606328 +HGNC:8688 PCDHB3 protocadherin beta 3 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA3 Clustered protocadherins 20 2000-06-28 2016-10-05 56132 ENSG00000113205 OTTHUMG00000129622 uc003lio.5 AF152496 NM_018937 CCDS4245 Q9Y5E6 10380929 MGI:2136737 RGD:1305171 PCDHB3 606329 +HGNC:8689 PCDHB4 protocadherin beta 4 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA4 Clustered protocadherins 20 2000-06-28 2016-10-05 56131 ENSG00000081818 OTTHUMG00000129617 uc003lip.3 AF152497 NM_018938 CCDS4246 Q9Y5E5 10380929 MGI:2136739 RGD:1304665 PCDHB4 606330 +HGNC:8690 PCDHB5 protocadherin beta 5 other protocadherin Approved 5q31.3 05q31.3 "DKFZp586B0217|PCDH-BETA5" Clustered protocadherins 20 2000-06-28 2016-10-05 26167 ENSG00000113209 OTTHUMG00000129616 uc003liq.5 AF152498 NM_015669 CCDS4247 Q9Y5E4 10380929 MGI:2136745 RGD:1309895 PCDHB5 606331 +HGNC:8691 PCDHB6 protocadherin beta 6 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA6 Clustered protocadherins 20 2000-06-28 2016-10-05 56130 ENSG00000113211 OTTHUMG00000129623 uc003lir.4 AF152499 NM_018939 "CCDS4248|CCDS78067" Q9Y5E3 10380929 MGI:2136748 PCDHB6 606332 +HGNC:8692 PCDHB7 protocadherin beta 7 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA7 Clustered protocadherins 20 2000-06-28 2016-10-05 56129 ENSG00000113212 OTTHUMG00000129608 uc003lit.5 AF152500 NM_018940 CCDS4249 Q9Y5E2 10380929 MGI:2136750 RGD:1591006 PCDHB7 606333 +HGNC:8693 PCDHB8 protocadherin beta 8 other protocadherin Approved 5q31.3 05q31.3 "PCDH-BETA8|PCDH3I" Clustered protocadherins 20 2000-06-28 2016-10-05 56128 ENSG00000120322 OTTHUMG00000129621 uc011dai.3 AF152501 NM_019120 CCDS4250 Q9UN66 10380929 MGI:2136752 PCDHB8 606334 +HGNC:8694 PCDHB9 protocadherin beta 9 other protocadherin Approved 5q31 05q31 "PCDH-BETA9|PCDH3H" protocadherin-3h Clustered protocadherins 20 2000-06-28 2014-11-19 56127 ENSG00000177839 OTTHUMG00000188326 uc032vnm.2 AF152502 NM_019119 CCDS75328 Q9Y5E1 10380929 RGD:1305349 606335 +HGNC:8681 PCDHB10 protocadherin beta 10 other protocadherin Approved 5q31.3 05q31.3 Clustered protocadherins 20 2000-06-28 2014-11-19 56126 ENSG00000120324 OTTHUMG00000129626 uc284pxq.1 AF152489 NM_018930 CCDS4252 Q9UN67 10380929 PCDHB10 606336 +HGNC:8682 PCDHB11 protocadherin beta 11 other protocadherin Approved 5q31.3 05q31.3 "PCDH-BETA11|ME2" cadherin ME2 Clustered protocadherins 20 2000-06-28 2016-10-05 56125 ENSG00000197479 OTTHUMG00000129618 uc003liy.4 AF152490 NM_018931 CCDS4253 Q9Y5F2 10380929 MGI:2136759 PCDHB11 606337 +HGNC:8683 PCDHB12 protocadherin beta 12 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA12 Clustered protocadherins 20 2000-06-28 2016-10-05 56124 ENSG00000120328 OTTHUMG00000129620 uc003liz.4 AF152491 NM_018932 CCDS4254 Q9Y5F1 10380929 MGI:2136757 RGD:1549697 PCDHB12 606338 +HGNC:8684 PCDHB13 protocadherin beta 13 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA13 Clustered protocadherins 20 2000-06-28 2016-10-05 56123 ENSG00000187372 OTTHUMG00000129615 uc003lja.3 AF152492 NM_018933 CCDS4255 Q9Y5F0 10380929 PCDHB13 606339 +HGNC:8685 PCDHB14 protocadherin beta 14 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA14 Clustered protocadherins 20 2000-06-28 2016-10-05 56122 ENSG00000120327 OTTHUMG00000129619 uc003ljb.5 AF152493 NM_018934 CCDS4256 Q9Y5E9 10380929 MGI:2136758 RGD:1594228 PCDHB14 606340 +HGNC:8686 PCDHB15 protocadherin beta 15 other protocadherin Approved 5q31.3 05q31.3 PCDH-BETA15 Clustered protocadherins 20 2000-06-28 2016-10-05 56121 ENSG00000113248 OTTHUMG00000129609 uc003lje.5 AF152494 NM_018935 CCDS4257 Q9Y5E8 10380929 MGI:2136760 RGD:1310328 PCDHB15 606341 +HGNC:14546 PCDHB16 protocadherin beta 16 other protocadherin Approved 5q31.3 05q31.3 "PCDHB8a|PCDH3X|KIAA1621|PCDH-BETA16|ME1" "cadherin ME1|protocadherin-3x|PCDHbeta 16" Clustered protocadherins 20 2001-05-14 2016-10-05 57717 ENSG00000272674 OTTHUMG00000188325 uc032vnl.2 AF217757 NM_020957 CCDS4251 Q9NRJ7 "11230163|11322959" MGI:2136754 PCDHB16 606345 +HGNC:14547 PCDHB17P protocadherin beta 17 pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 PCDH-psi1 PCDHB17 Clustered protocadherins 20 2001-02-01 2015-01-20 2015-01-20 54661 ENSG00000255622 OTTHUMG00000187247 AF152527 NR_001280 10380929 RGD:1307591 PGOHUM00000301139 +HGNC:14548 PCDHB18P protocadherin beta 18 pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 PCDH-psi2 PCDHB18 Clustered protocadherins 20 2001-02-01 2015-01-20 2015-01-20 54660 ENSG00000146001 OTTHUMG00000167484 AF152528 NR_001281 Q96TA0 10380929 PGOHUM00000258203 +HGNC:14549 PCDHB19P protocadherin beta 19 pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 PCDH-PSI5 Clustered protocadherins 20 2001-05-14 2015-01-20 84054 ENSG00000262096 OTTHUMG00000177851 AF329369 NR_001282 "11322959|11230163" PGOHUM00000301141 +HGNC:8679 PCDHB@ protocadherin beta cluster protein-coding gene gene with protein product Approved 5q31 05q31 PCDH3 Clustered protocadherins 20 2000-06-28 2015-01-20 56116 NG_000017 10380929 +HGNC:8695 PCDHG@ protocadherin gamma cluster protein-coding gene gene with protein product Approved 5q31 05q31 "PCDH2|PCDH4" Clustered protocadherins 20 2000-06-28 2011-03-28 56115 NG_000012 10380929 +HGNC:8696 PCDHGA1 protocadherin gamma subfamily A, 1 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-A1 Clustered protocadherins 20 2000-06-28 2014-11-19 56114 ENSG00000204956 OTTHUMG00000163678 uc003lji.2 AF152318 NM_018912 CCDS54922 Q9Y5H4 10380929 MGI:1935212 RGD:1590761 PCDHGA1 606288 +HGNC:8700 PCDHGA2 protocadherin gamma subfamily A, 2 other protocadherin Approved 5q31.3 05q31.3 PCDH-GAMMA-A2 Clustered protocadherins 20 2000-06-28 2016-10-05 56113 ENSG00000081853 OTTHUMG00000163679 uc003ljk.4 AF152508 NM_018915 CCDS47289 Q9Y5H1 10380929 MGI:1935214 RGD:1587259 PCDHGA2 606289 +HGNC:8701 PCDHGA3 protocadherin gamma subfamily A, 3 other protocadherin Approved 5q31.3 05q31.3 PCDH-GAMMA-A3 Clustered protocadherins 20 2000-06-28 2016-10-05 56112 ENSG00000254245 OTTHUMG00000163680 uc003ljm.3 AF152510 NM_018916 "CCDS47290|CCDS75329" Q9Y5H0 10380929 MGI:1935215 RGD:1598664 PCDHGA3 606290 +HGNC:8702 PCDHGA4 protocadherin gamma subfamily A, 4 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-A4 Clustered protocadherins 20 2000-06-28 2016-04-25 56111 ENSG00000262576 OTTHUMG00000177593 uc003ljq.4 AF152511 NM_018917 "CCDS58979|CCDS75331" Q9Y5G9 10380929 MGI:1935216 RGD:620725 PCDHGA4 606291 +HGNC:8703 PCDHGA5 protocadherin gamma subfamily A, 5 other protocadherin Approved 5q31 05q31 "CDH-GAMMA-A5|ME3|PCDH-GAMMA-A5" cadherin ME3 Clustered protocadherins 20 2000-06-28 2014-11-19 56110 ENSG00000253485 OTTHUMG00000163683 uc003lju.3 AF152512 NM_018918 "CCDS54925|CCDS75333" Q9Y5G8 10380929 MGI:1935217 RGD:1311949 PCDHGA5 606292 +HGNC:8704 PCDHGA6 protocadherin gamma subfamily A, 6 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-A6 Clustered protocadherins 20 2000-06-28 2014-11-19 56109 ENSG00000253731 OTTHUMG00000163684 uc003ljy.3 AF152513 NM_018919 "CCDS54926|CCDS75335" Q9Y5G7 10380929 MGI:1935218 RGD:7625105 PCDHGA6 606293 +HGNC:8705 PCDHGA7 protocadherin gamma subfamily A, 7 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-A7 Clustered protocadherins 20 2000-06-28 2014-11-19 56108 ENSG00000253537 OTTHUMG00000163685 uc003lka.4 AF152514 NM_018920 "CCDS54927|CCDS75336" Q9Y5G6 10380929 MGI:1935219 RGD:1305108 PCDHGA7 606294 +HGNC:8706 PCDHGA8 protocadherin gamma subfamily A, 8 other protocadherin Approved 5q31.3 05q31.3 "KIAA0327|PCDH-GAMMA-A8" Clustered protocadherins 20 2000-06-28 2016-10-05 9708 ENSG00000253767 OTTHUMG00000164053 uc003lkd.3 AF152515 NM_032088 "CCDS47291|CCDS75338" Q9Y5G5 10380929 MGI:1935221 RGD:1310676 PCDHGA8 606295 +HGNC:8707 PCDHGA9 protocadherin gamma subfamily A, 9 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-A9 Clustered protocadherins 20 2000-06-28 2014-11-19 56107 ENSG00000261934 OTTHUMG00000177473 uc003lkh.3 AF152516 NM_018921 "CCDS58981|CCDS75341" Q9Y5G4 10380929 MGI:1935226 RGD:620729 PCDHGA9 606296 +HGNC:8697 PCDHGA10 protocadherin gamma subfamily A, 10 other protocadherin Approved 5q31.3 05q31.3 PCDH-GAMMA-A10 Clustered protocadherins 20 2000-06-28 2016-10-05 56106 ENSG00000253846 OTTHUMG00000163688 uc003lkl.3 NM_018913 "CCDS47292|CCDS75343" Q9Y5H3 10380929 MGI:1935227 RGD:1308289 PCDHGA10 606297 +HGNC:8698 PCDHGA11 protocadherin gamma subfamily A, 11 other protocadherin Approved 5q31.3 05q31.3 PCDH-GAMMA-A11 Clustered protocadherins 20 2000-06-28 2016-10-05 56105 ENSG00000253873 OTTHUMG00000164055 uc003lkq.3 AF152505 NM_018914 "CCDS47294|CCDS54930|CCDS75345" Q9Y5H2 10380929 MGI:1935228 RGD:621232 PCDHGA11 606298 +HGNC:8699 PCDHGA12 protocadherin gamma subfamily A, 12 other protocadherin Approved 5q31.3 05q31.3 "KIAA0588|FIB3|PCDH-GAMMA-A12" fibroblast cadherin FIB3 CDH21 cadherin 21 Clustered protocadherins 20 2000-06-28 2002-05-23 2016-10-05 26025 ENSG00000253159 OTTHUMG00000129611 uc003lkt.3 AF152506 NM_003735 "CCDS4260|CCDS75346" O60330 10380929 MGI:1935229 PCDHGA12 603059 +HGNC:8708 PCDHGB1 protocadherin gamma subfamily B, 1 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-B1 protocadherin gamma subfamily B, 1, isoform 2 Clustered protocadherins 20 2000-06-28 2014-11-19 56104 ENSG00000254221 OTTHUMG00000163681 uc003ljo.3 AF152517 NM_018922 "CCDS54923|CCDS75330" Q9Y5G3 10380929 MGI:1935169 PCDHGB1 606299 +HGNC:8709 PCDHGB2 protocadherin gamma subfamily B, 2 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-B2 Clustered protocadherins 20 2000-06-28 2014-11-19 56103 ENSG00000253910 OTTHUMG00000163682 uc003ljs.3 AF152331 NM_018923 "CCDS54924|CCDS75332" Q9Y5G2 10380929 MGI:1935170 PCDHGB2 606300 +HGNC:8710 PCDHGB3 protocadherin gamma subfamily B, 3 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-B3 Clustered protocadherins 20 2000-06-28 2014-11-19 56102 ENSG00000262209 OTTHUMG00000177471 uc011dat.2 AF152519 NM_018924 "CCDS58980|CCDS75334" Q9Y5G1 10380929 MGI:1935200 PCDHGB3 606301 +HGNC:8711 PCDHGB4 protocadherin gamma subfamily B, 4 other protocadherin Approved 5q31 05q31 "FIB2|CDH20|PCDH-GAMMA-B4" "fibroblast cadherin FIB2|cadherin 20" Clustered protocadherins 20 2000-06-28 2014-11-19 8641 ENSG00000253953 OTTHUMG00000163686 uc003lkc.3 AF152520 NM_003736 "CCDS54928|CCDS75337" Q9UN71 10380929 MGI:1935173 RGD:7632725 PCDHGB4 603058 +HGNC:8712 PCDHGB5 protocadherin gamma subfamily B, 5 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-B5 Clustered protocadherins 20 2000-06-28 2014-11-19 56101 ENSG00000276547 OTTHUMG00000188231 uc003lkf.3 AF152521 NM_018925 "CCDS75339|CCDS75340" Q9Y5G0 10380929 MGI:1935196 RGD:1591752 606302 +HGNC:8713 PCDHGB6 protocadherin gamma subfamily B, 6 other protocadherin Approved 5q31 05q31 PCDH-GAMMA-B6 Clustered protocadherins 20 2000-06-28 2014-11-19 56100 ENSG00000253305 OTTHUMG00000163687 uc003lkj.3 AF152522 NM_018926 "CCDS54929|CCDS75342" Q9Y5F9 10380929 MGI:1935197 RGD:7743693 PCDHGB6 606303 +HGNC:8714 PCDHGB7 protocadherin gamma subfamily B, 7 other protocadherin Approved 5q31.3 05q31.3 "ME6|PCDH-GAMMA-B7" cadherin ME6 Clustered protocadherins 20 2000-06-28 2016-10-05 56099 ENSG00000254122 OTTHUMG00000164054 uc003lkn.3 AF152523 NM_018927 "CCDS47293|CCDS75344" Q9Y5F8 10380929 MGI:1935199 RGD:1588516 PCDHGB7 606304 +HGNC:8715 PCDHGB8P protocadherin gamma subfamily B, 8 pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 PCDH-PSI3 Clustered protocadherins 20 2000-06-28 2013-09-26 56120 ENSG00000248449 OTTHUMG00000154974 AF152529 NR_001297 10380929 MGI:1935200 PGOHUM00000257130 +HGNC:15688 PCDHGB9P protocadherin gamma subfamily B, 9 pseudogene pseudogene pseudogene Approved 5q31 05q31 PSI6 Clustered protocadherins 20 2001-05-14 2011-06-07 84055 ENSG00000276545 OTTHUMG00000188233 AY013877 NG_029268 11230163 +HGNC:8716 PCDHGC3 protocadherin gamma subfamily C, 3 other protocadherin Approved 5q31.3 05q31.3 "PC-43|PC43|PCDH-GAMMA-C3" "cadherin-like 2|protocadherin 2|protocadherin 43" PCDH2 Clustered protocadherins 20 2000-08-22 2016-10-05 5098 ENSG00000240184 OTTHUMG00000129613 uc003lkv.3 AF152337 NM_002588 "CCDS4261|CCDS75347|CCDS75348" Q9UN70 "9360932|8508762" MGI:1935201 RGD:620746 PCDHGC3 603627 +HGNC:8717 PCDHGC4 protocadherin gamma subfamily C, 4 other protocadherin Approved 5q31.3 05q31.3 PCDH-GAMMA-C4 Clustered protocadherins 20 2000-06-28 2016-10-05 56098 ENSG00000242419 OTTHUMG00000129625 uc003lky.3 AF152525 NM_018928 "CCDS4262|CCDS75349" Q9Y5F7 10380929 MGI:1935203 PCDHGC4 606305 +HGNC:8718 PCDHGC5 protocadherin gamma subfamily C, 5 other protocadherin Approved 5q31.3 05q31.3 PCDH-GAMMA-C5 Clustered protocadherins 20 2000-06-28 2016-10-05 56097 ENSG00000240764 OTTHUMG00000129624 uc003lla.3 AF152526 NM_018929 "CCDS4263|CCDS75350" Q9Y5F6 10380929 MGI:1935205 RGD:2312582 PCDHGC5 606306 +HGNC:8719 PCDHGCT protocadherin gamma constant other protocadherin Approved 5q31 05q31 PCDHGC Clustered protocadherins 20 2000-06-28 2010-01-26 56118 10380929 +HGNC:16212 PCED1A PC-esterase domain containing 1A protein-coding gene gene with protein product Approved 20p13 20p13 "bA12M19.1|FLJ22376" "C20orf81|FAM113A" "chromosome 20 open reading frame 81|family with sequence similarity 113, member A" 2001-07-17 2012-06-11 2012-06-11 2014-11-19 64773 ENSG00000132635 OTTHUMG00000031716 uc002wgz.3 AK026029 NM_022760 "CCDS13035|CCDS59442" Q9H1Q7 20056006 MGI:2442177 RGD:1308836 +HGNC:28255 PCED1B PC-esterase domain containing 1B protein-coding gene gene with protein product Approved 12q13.11 12q13.11 MGC16044 FAM113B family with sequence similarity 113, member B 2006-02-10 2012-06-11 2012-06-11 2014-11-19 91523 ENSG00000179715 OTTHUMG00000169617 uc021qxi.3 BC016154 NM_138371 CCDS8752 Q96HM7 20056006 MGI:2446270 RGD:1561028 +HGNC:44166 PCED1B-AS1 PCED1B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q13.11 12q13.11 PCED1B antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100233209 ENSG00000247774 OTTHUMG00000169619 uc058nab.1 AK123977 NR_026544 +HGNC:44083 PCED1CP PC-esterase domain containing 1C, pseudogene pseudogene pseudogene Approved 2q34 02q34 2012-06-11 2012-06-11 2012-06-11 646249 ENSG00000231254 OTTHUMG00000154768 NG_022894 PGOHUM00000241104 +HGNC:30097 PCF11 PCF11 cleavage and polyadenylation factor subunit protein-coding gene gene with protein product Approved 11q14.1 11q14.1 KIAA0824 "PCF11, cleavage and polyadenylation factor II subunit, homolog (S. cerevisiae)|PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)" 2005-09-10 2013-07-02 2016-10-05 51585 ENSG00000165494 OTTHUMG00000167031 uc001ozx.5 AB020631 NM_015885 CCDS44689 O94913 11060040 MGI:1919579 RGD:1563397 PCF11 608876 +HGNC:52263 PCF11-AS1 PCF11 anstisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q14.1 11q14.1 ENST00000602322.1 2015-11-04 2015-11-04 106736475 ENSG00000269939 OTTHUMG00000183952 AK092827 NR_133914 26421281 +HGNC:30145 PCGEM1 PCGEM1, prostate-specific transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved 2q32.3 02q32.3 "NCRNA00071|LINC00071|PCAT9" "non-protein coding RNA 71|long intergenic non-protein coding RNA 71|prostate cancer associated transcript 9" prostate-specific transcript 1 (non-protein coding) Long non-coding RNAs 788 2008-06-04 2012-11-15 2014-11-19 64002 ENSG00000227418 OTTHUMG00000154342 uc002ute.3 AF223389 NR_002769 "11050243|16569192|23459097" 605443 PCGEM1 +HGNC:17615 PCGF1 polycomb group ring finger 1 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "NSPC1|RNF68|MGC10882" "Ring finger proteins|Polycomb group ring fingers" "58|61" 2005-01-17 2014-11-19 84759 ENSG00000115289 OTTHUMG00000129954 uc002slz.4 AF087884 NM_032673 CCDS1946 Q9BSM1 11287196 MGI:1917087 RGD:1549782 PCGF1 610231 +HGNC:12929 PCGF2 polycomb group ring finger 2 protein-coding gene gene with protein product Approved 17q12 17q12 MEL-18 "ZNF144|RNF110" ring finger protein 110 "Ring finger proteins|Polycomb group ring fingers" "58|61" 1993-11-01 2005-01-19 2005-01-17 2015-09-03 7703 ENSG00000277258 OTTHUMG00000188501 uc060eng.1 D13969 NM_007144 CCDS32638 P35227 8325509 MGI:99161 RGD:1305097 PCGF2 600346 +HGNC:10066 PCGF3 polycomb group ring finger 3 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "FLJ36550|DONG1|RNF3A|MGC40413" RNF3 ring finger protein 3 "Ring finger proteins|Polycomb group ring fingers" "58|61" 1997-07-01 2005-01-19 2005-01-17 2014-11-19 10336 ENSG00000185619 OTTHUMG00000119000 uc003gbe.4 AK093869 NM_006315 CCDS3339 Q3KNV8 MGI:1916837 RGD:1311479 PCGF3 +HGNC:28264 PCGF5 polycomb group ring finger 5 protein-coding gene gene with protein product Approved 10q23.32 10q23.32 MGC16202 RNF159 ring finger protein (C3HC4 type) 159 "Ring finger proteins|Polycomb group ring fingers" "58|61" 2004-04-16 2005-01-19 2005-01-17 2016-10-05 84333 ENSG00000180628 OTTHUMG00000018740 uc001khh.5 AL832003 NM_032373 CCDS7413 Q86SE9 8076819 MGI:1923505 RGD:1583513 PCGF5 +HGNC:21156 PCGF6 polycomb group ring finger 6 protein-coding gene gene with protein product Approved 10q24.33 10q24.33 MBLR RNF134 ring finger protein 134 "Ring finger proteins|Polycomb group ring fingers" "58|61" 2003-05-21 2005-01-19 2005-01-17 2015-08-25 84108 ENSG00000156374 OTTHUMG00000018982 uc001kwt.3 AB047006 NM_032154 "CCDS7546|CCDS31275" Q9BYE7 12167161 MGI:1918291 RGD:1306904 PCGF6 607816 +HGNC:30341 PCGF7P polycomb group ring finger 7 pseudogene pseudogene pseudogene Approved 19p12 19p12 RNF134P1 ring finger protein 134 pseudogene 1 "Ring finger proteins|Polycomb group ring fingers" "58|61" 2004-04-22 2005-01-19 2005-01-17 2016-07-25 253272 ENSG00000268140 OTTHUMG00000182931 AC073539 NG_003076 PGOHUM00000295290 +HGNC:8720 PCH1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:8721 PCH2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:25653 PCID2 PCI domain containing 2 protein-coding gene gene with protein product Approved 13q34 13q34 FLJ11305 Transcription and export complex 2 1276 2006-03-31 2014-11-19 55795 ENSG00000126226 OTTHUMG00000017385 uc058yls.1 AK002167 NM_018386 "CCDS9532|CCDS58301|CCDS58302" Q5JVF3 12477932 MGI:2443003 RGD:1307041 PCID2 613713 +HGNC:16200 PCIF1 PDX1 C-terminal inhibiting factor 1 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "bA465L10.1|PPP1R121" protein phosphatase 1, regulatory subunit 121 C20orf67 chromosome 20 open reading frame 67 Protein phosphatase 1 regulatory subunits 694 2001-07-17 2008-04-29 2008-04-29 2014-11-19 63935 ENSG00000100982 OTTHUMG00000032635 uc002xqs.4 AB050014 NM_022104 CCDS13388 Q9H4Z3 "12565871|15121856" MGI:2443858 RGD:1310800 PCIF1 +HGNC:8724 PCK1 phosphoenolpyruvate carboxykinase 1 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 PEPCK-C phosphoenolpyruvate carboxykinase 1 (soluble) 1990-09-10 2015-12-16 2015-12-16 5105 ENSG00000124253 OTTHUMG00000032825 uc002xyn.5 NM_002591 CCDS13460 P35558 1492743 MGI:97501 RGD:3267 PCK1 614168 124123 4.1.1.32 +HGNC:8725 PCK2 phosphoenolpyruvate carboxykinase 2, mitochondrial protein-coding gene gene with protein product Approved 14q11.2-q12 14q11.2-q12 "PEPCK|PEPCK2" phosphoenolpyruvate carboxykinase 2 (mitochondrial) 1993-03-04 2016-02-26 2016-10-11 5106 ENSG00000100889 OTTHUMG00000028791 uc001wlt.4 AK129934 NM_001018073 "CCDS9609|CCDS41928|CCDS76660" Q16822 "8645161|9657976" MGI:1860456 RGD:1311112 PCK2 614095 124125 4.1.1.32 +HGNC:13406 PCLO piccolo presynaptic cytomatrix protein protein-coding gene gene with protein product Approved 7q21.11 07q21.11 "KIAA0559|DKFZp779G1236|ACZ" aczonin piccolo (presynaptic cytomatrix protein) "Zinc fingers|C2 domain containing|PDZ domain containing" "26|823|1220" 2001-06-25 2013-01-07 2015-01-28 27445 ENSG00000186472 OTTHUMG00000154853 uc003uhx.3 AB011131 NM_014510 "CCDS47630|CCDS47631" Q9Y6V0 "8900486|9628581" MGI:1349390 RGD:69406 PCLO 604918 431917 +HGNC:8727 PCM1 pericentriolar material 1 protein-coding gene gene with protein product Approved 8p22 08p22 PTC4 1994-09-30 2016-10-05 5108 ENSG00000078674 OTTHUMG00000163699 uc003wyi.5 NM_006197 "CCDS47812|CCDS83255|CCDS83256" Q15154 "8120099|15659651" MGI:1277958 RGD:620901 PCM1 600299 124129 +HGNC:8728 PCMT1 protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding gene gene with protein product Approved 6q25.1 06q25.1 1992-09-11 2016-04-25 5110 ENSG00000120265 OTTHUMG00000015794 uc003qne.4 XM_011535868 "CCDS5219|CCDS59041|CCDS75533|CCDS75534" P22061 "1478665|10343128" MGI:97502 RGD:3268 PCMT1 176851 2.1.1.77 +HGNC:30483 PCMTD1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding gene gene with protein product Approved 8q11.23 08q11.23 FLJ10883 2005-10-06 2014-11-18 115294 ENSG00000168300 OTTHUMG00000164246 uc064msu.1 NM_052937 "CCDS6148|CCDS69480" Q96MG8 MGI:2441773 RGD:1586096 PCMTD1 +HGNC:38804 PCMTD1P1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-08-05 2015-05-18 100874520 ENSG00000226061 OTTHUMG00000041613 NG_032219 PGOHUM00000305636 +HGNC:38805 PCMTD1P2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 2010-08-05 2015-05-18 100287647 ENSG00000260087 OTTHUMG00000176376 NG_028879 PGOHUM00000293824 +HGNC:38806 PCMTD1P3 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 3 pseudogene pseudogene Approved 7p15.3 07p15.3 2010-08-05 2015-05-18 100422595 ENSG00000234800 OTTHUMG00000152551 NG_026445 PGOHUM00000302071 +HGNC:51748 PCMTD1P4 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 4 pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-18 2015-05-18 107105258 NG_046576 PGOHUM00000297399 +HGNC:51749 PCMTD1P5 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 5 pseudogene pseudogene Approved 22p11.2 22p11.2 2015-05-18 2015-05-18 107105260 NG_046578 PGOHUM00000297578 +HGNC:51750 PCMTD1P6 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 6 pseudogene pseudogene Approved 14p11.2 14p11.2 2015-05-18 2015-05-18 107105255 NG_046573 PGOHUM00000292534 +HGNC:51751 PCMTD1P7 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 7 pseudogene pseudogene Approved 20q11.1 20q11.1 2015-05-18 2015-05-18 107080553 ENSG00000282949 OTTHUMG00000191529 NG_046382 PGOHUM00000296941 +HGNC:51752 PCMTD1P8 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 pseudogene 8 pseudogene pseudogene Approved 20q11.21 20q11.21 2015-05-18 2015-05-18 107105257 NG_046574 PGOHUM00000297102 +HGNC:15882 PCMTD2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 FLJ10883 C20orf36 chromosome 20 open reading frame 36 2001-06-21 2005-10-06 2005-10-06 2014-11-18 55251 ENSG00000203880 OTTHUMG00000033029 uc002yil.5 AK001745 NM_018257 "CCDS13559|CCDS46631" Q9NV79 MGI:1923927 RGD:1305684 PCMTD2 +HGNC:8729 PCNA proliferating cell nuclear antigen protein-coding gene gene with protein product Approved 20p12.3 20p12.3 1990-01-15 2016-10-05 5111 ENSG00000132646 OTTHUMG00000031798 uc002wlq.4 J04718 NM_002592 CCDS13087 P12004 2565339 MGI:97503 RGD:3269 PCNA 176740 442672 +HGNC:37184 PCNA-AS1 PCNA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p12.3 20p12.3 "PCNAAS|PCNA-AS" "PCNA antisense RNA (non-protein coding)|PCNA antisense RNA 1 (non-protein coding)" 2009-08-18 2010-11-25 2012-08-15 2014-04-08 100302739 NR_028370 "10488129|24704293" +HGNC:8730 PCNAL entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:8732 PCNAP1 proliferating cell nuclear antigen pseudogene 1 pseudogene pseudogene Approved 4q23 04q23 p1PCNA 1996-04-17 2014-11-19 359806 ENSG00000249065 OTTHUMG00000161312 D17326 NG_002902 "8995762|22309575" PGOHUM00000245632 +HGNC:8733 PCNAP2 proliferating cell nuclear antigen pseudogene 2 pseudogene pseudogene Approved 4q23 04q23 pF2PCNA 1996-04-17 2014-11-19 359805 D17327 NG_002901 "8995762|22309575" +HGNC:43736 PCNAP3 proliferating cell nuclear antigen pseudogene 3 pseudogene pseudogene Approved Xp11.3 Xp11.3 2012-02-13 2012-02-16 392454 ENSG00000214009 OTTHUMG00000021414 NG_022595 22309575 PGOHUM00000241260 +HGNC:43737 PCNAP4 proliferating cell nuclear antigen pseudogene 4 pseudogene pseudogene Approved 11p15.1 11p15.1 2012-02-13 2012-02-16 390102 ENSG00000254544 OTTHUMG00000167395 NG_021777 22309575 PGOHUM00000242193 +HGNC:8731 PCNAP entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-02-21 +HGNC:30023 PCNP PEST proteolytic signal containing nuclear protein protein-coding gene gene with protein product Approved 3q12.3 03q12.3 2006-03-06 2014-11-19 57092 ENSG00000081154 OTTHUMG00000159108 uc003dva.4 NM_020357 CCDS2942 Q8WW12 12176013 MGI:1923552 RGD:1563775 PCNP 615210 +HGNC:32440 PCNPP1 PEST containing nuclear protein pseudogene 1 pseudogene pseudogene Approved 12q24.12 12q24.12 PCNPP PEST containing nuclear protein pseudogene 2006-01-05 2011-05-24 2011-05-24 2011-05-24 654427 ENSG00000258359 OTTHUMG00000169601 AC137055 NG_009494 PGOHUM00000239579 +HGNC:41974 PCNPP2 PEST containing nuclear protein pseudogene 2 pseudogene pseudogene Approved 9q22.1 09q22.1 2011-05-24 2014-11-18 100128911 ENSG00000225856 OTTHUMG00000020174 NG_029024 PGOHUM00000236252 +HGNC:41975 PCNPP3 PEST containing nuclear protein pseudogene 3 pseudogene pseudogene Approved 12q14.3 12q14.3 2011-05-24 2014-11-18 729298 ENSG00000213344 OTTHUMG00000168873 NG_029023 PGOHUM00000239499 +HGNC:41976 PCNPP4 PEST containing nuclear protein pseudogene 4 pseudogene pseudogene Approved Xq13.3 Xq13.3 2011-05-24 2014-11-18 100874220 ENSG00000237089 OTTHUMG00000021867 NG_032386 PGOHUM00000241402 +HGNC:41977 PCNPP5 PEST containing nuclear protein pseudogene 5 pseudogene pseudogene Approved 13q14.2 13q14.2 2011-05-24 2014-11-19 100507361 ENSG00000177197 OTTHUMG00000016898 NG_029022 PGOHUM00000248395 +HGNC:16068 PCNT pericentrin protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KEN|KIAA0402|PCN|PCNTB|SCKL4" "kendrin|Seckel syndrome 4" PCNT2 pericentrin 2 (kendrin) 2001-07-13 2005-11-03 2008-01-30 2014-11-19 5116 ENSG00000160299 OTTHUMG00000090665 uc002zji.4 AB007862 NM_006031 CCDS33592 O95613 "8812505|9455477" MGI:102722 RGD:1595865 PCNT 605925 159181 +HGNC:32391 PCNT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-11-24 +HGNC:19740 PCNX1 pecanex homolog 1 (Drosophila) protein-coding gene gene with protein product Approved 14q24.2 14q24.2 "KIAA0995|KIAA0805|pecanex" "PCNXL1|PCNX" "pecanex-like 1 (Drosophila)|pecanex homolog (Drosophila)" 2002-11-20 2016-01-18 2016-01-18 2016-01-18 22990 ENSG00000100731 OTTHUMG00000171242 uc001xmo.2 "AF233450|AB018348" NM_014982 "CCDS9806|CCDS76695" Q96RV3 "9244429|15777640" MGI:1891924 RGD:1306115 +HGNC:8736 PCNX2 pecanex homolog 2 (Drosophila) protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "KIAA0435|FLJ11383" PCNXL2 pecanex-like 2 (Drosophila) 1998-10-12 2016-01-18 2016-01-18 2016-01-18 80003 ENSG00000135749 OTTHUMG00000037824 uc001hvl.3 AK055374 NM_014801 CCDS44335 A6NKB5 12477932 MGI:2445010 RGD:1305883 +HGNC:18760 PCNX3 pecanex homolog 3 (Drosophila) protein-coding gene gene with protein product Approved 11q13.1 11q13.1 FLJ22427 PCNXL3 pecanex-like 3 (Drosophila) 2002-07-22 2016-01-18 2016-01-18 2016-10-05 399909 ENSG00000197136 OTTHUMG00000166539 uc001oey.3 BX640978 NM_032223 CCDS44650 Q9H6A9 15146197 MGI:1861733 RGD:1305529 +HGNC:20349 PCNX4 pecanex homolog 4 (Drosophila) protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "C14orf135|PCNXL4" "chromosome 14 open reading frame 135|pecanex-like 4 (Drosophila)" 2003-01-28 2016-01-18 2016-01-18 2016-01-18 64430 ENSG00000126773 OTTHUMG00000150361 uc059ccm.1 AK022861 NM_022495 "CCDS32091|CCDS81809" Q63HM2 MGI:1914958 RGD:1582892 +HGNC:8738 PCOLCE procollagen C-endopeptidase enhancer protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "PCPE|PCPE1" "procollagen, type 1, COOH-terminal proteinase enhancer|procollagen C-proteinase enhancer 1" 1994-03-17 2016-10-05 5118 ENSG00000106333 OTTHUMG00000156675 uc003uvo.5 L33799 NM_002593 CCDS5700 Q15113 "8824813|9799793" MGI:105099 RGD:3270 PCOLCE 600270 +HGNC:40430 PCOLCE-AS1 PCOLCE antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q22.1 07q22.1 PCOLCE antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 100129845 ENSG00000224729 OTTHUMG00000156674 uc011kjy.3 AK097705 NR_038910 +HGNC:8739 PCOLCE2 procollagen C-endopeptidase enhancer 2 protein-coding gene gene with protein product Approved 3q23 03q23 PCPE2 1999-12-01 2016-10-05 26577 ENSG00000163710 OTTHUMG00000159312 uc003evd.4 AF098269 NM_013363 CCDS3127 Q9UKZ9 10873381 MGI:1923727 RGD:1595195 PCOLCE2 607064 +HGNC:8741 PCOS1 polycystic ovary syndrome 1 phenotype phenotype only Approved 19p13.2 19p13.2 1996-07-19 2014-01-30 5120 16091490 184700 +HGNC:30209 PCP2 Purkinje cell protein 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MGC41903|GPSM4" 2004-02-03 2014-11-19 126006 ENSG00000174788 OTTHUMG00000182405 uc002mgz.4 BC025387 XM_058956 "CCDS32893|CCDS62521" Q8IVA1 12477932 MGI:97508 RGD:1306217 PCP2 +HGNC:8742 PCP4 Purkinje cell protein 4 protein-coding gene gene with protein product Approved 21q22.2 21q22.2 PEP-19 1997-06-09 2014-11-18 5121 ENSG00000183036 OTTHUMG00000086731 uc002yyp.4 "X93349|U53709" NM_006198 CCDS33563 P48539 "8931698|8914602" MGI:97509 RGD:3271 PCP4 601629 +HGNC:20448 PCP4L1 Purkinje cell protein 4 like 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 IQM1 purkinje cell protein 4 like 1 2006-02-10 2006-02-27 2014-11-18 654790 ENSG00000248485 OTTHUMG00000034340 uc001gad.3 BC028905 XM_017002154 CCDS53412 A6NKN8 MGI:1913675 RGD:1593809 PCP4L1 +HGNC:8743 PCSK1 proprotein convertase subtilisin/kexin type 1 protein-coding gene gene with protein product Approved 5q15 05q15 "PC1|PC3|SPC3" "prohormone convertase 3|prohormone convertase 1|neuroendocrine convertase 1|proprotein convertase 1" NEC1 Proprotein convertase subtilisin/kexin family 973 1991-06-07 2016-10-05 5122 ENSG00000175426 OTTHUMG00000122089 uc003kls.3 NM_000439 "CCDS4081|CCDS54881" P29120 1765368 MGI:97511 RGD:3272 PCSK1 162150 124131 S08.072 objectId:2382 +HGNC:17301 PCSK1N proprotein convertase subtilisin/kexin type 1 inhibitor protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "SAAS|SgVIII|SCG8|proSAAS|PEN|BigLEN" Granins 925 2001-11-30 2016-05-09 27344 ENSG00000102109 OTTHUMG00000034502 uc004dkz.6 AF181562 NM_013271 CCDS14307 Q9UHG2 10632593 MGI:1353431 RGD:9286698 PCSK1N 300399 I49.001 +HGNC:8744 PCSK2 proprotein convertase subtilisin/kexin type 2 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "PC2|SPC2" "neuroendocrine convertase 2|KEX2-like endoprotease 2" NEC2 Proprotein convertase subtilisin/kexin family 973 1991-06-07 2016-10-05 5126 ENSG00000125851 OTTHUMG00000031941 uc002wpm.4 AK312341 NM_002594 "CCDS13125|CCDS56179|CCDS56180" P16519 1765368 MGI:97512 RGD:3273 PCSK2 162151 S08.073 objectId:2383 +HGNC:8746 PCSK4 proprotein convertase subtilisin/kexin type 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PC4|SPC5|DKFZp434B217|MGC34749" Proprotein convertase subtilisin/kexin family 973 1993-10-19 2015-09-03 54760 ENSG00000115257 OTTHUMG00000128541 uc002ltb.3 AK057235 NM_017573 CCDS12069 Q6UW60 7782070 MGI:97514 RGD:620325 PCSK4 600487 S08.074 objectId:2384 +HGNC:8747 PCSK5 proprotein convertase subtilisin/kexin type 5 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "PC5|PC6|SPC6" Proprotein convertase subtilisin/kexin family 973 1993-10-19 2015-09-03 5125 ENSG00000099139 OTTHUMG00000020039 uc004ajz.5 XM_005252039 "CCDS6652|CCDS55320" Q92824 7782070 MGI:97515 RGD:620326 PCSK5 600488 S08.076 objectId:2385 +HGNC:8569 PCSK6 proprotein convertase subtilisin/kexin type 6 protein-coding gene gene with protein product Approved 15q26 15q26 SPC4 "subtilisin-like protease|subtilisin-like proprotein convertase 4|subtilisin/kexin-like protease PACE4" PACE4 paired basic amino acid cleaving system 4 Proprotein convertase subtilisin/kexin family 973 1992-06-05 2004-06-16 2004-06-14 2016-10-12 5046 ENSG00000140479 OTTHUMG00000172097 uc032csi.2 NM_002570 "CCDS73789|CCDS73790|CCDS73791|CCDS73792|CCDS73793" P29122 1741956 MGI:102897 RGD:3246 LRG_888|http://www.lrg-sequence.org/LRG/LRG_888 PCSK6 167405 S08.075 objectId:2386 +HGNC:51448 PCSK6-AS1 PCSK6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q26.3 15q26.3 2014-11-28 2014-12-01 105371027 ENSG00000259764 OTTHUMG00000172093 BG505308 NR_132373 +HGNC:8748 PCSK7 proprotein convertase subtilisin/kexin type 7 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "PC7|PC8|LPC|SPC7" Proprotein convertase subtilisin/kexin family 973 1999-02-24 2016-10-05 9159 ENSG00000160613 OTTHUMG00000165640 uc001pqr.4 U40623 NM_004716 CCDS8382 Q16549 "8615762|9820811" MGI:107421 RGD:3275 PCSK7 604872 S08.077 objectId:2387 +HGNC:20001 PCSK9 proprotein convertase subtilisin/kexin type 9 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "NARC-1|FH3" HCHOLA3 hypercholesterolemia, autosomal dominant 3 Proprotein convertase subtilisin/kexin family 973 2003-05-13 2003-05-13 2016-10-12 255738 ENSG00000169174 OTTHUMG00000008136 uc001cyf.3 AX207686 NM_174936 CCDS603 Q8NBP7 "12552133|12730697" MGI:2140260 RGD:728909 "British Heart Foundation|http://www.ucl.ac.uk/ldlr/Current/home.php?select_db=PCSK9|LRG_275|http://www.lrg-sequence.org/LRG/LRG_275" PCSK9 607786 124137 S08.039 objectId:2388 +HGNC:8752 PCTP phosphatidylcholine transfer protein protein-coding gene gene with protein product Approved 17q22 17q22 STARD2 StAR-related lipid transfer (START) domain containing 2 StAR related lipid transfer domain containing 759 1999-01-11 2016-01-15 58488 ENSG00000141179 OTTHUMG00000177859 uc002iul.5 AK024667 NM_021213 "CCDS11588|CCDS45741|CCDS82165|CCDS82166" Q9UKL6 MGI:107375 RGD:3276 PCTP 606055 +HGNC:20588 PCYOX1 prenylcysteine oxidase 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "KIAA0908|PCL1" 2003-09-25 2014-11-19 51449 ENSG00000116005 OTTHUMG00000129671 uc002sgn.5 AB020715 NM_016297 CCDS1902 Q9UHG3 "10585463|12186880" MGI:1914131 RGD:628652 PCYOX1 610995 1.8.3.5 +HGNC:28477 PCYOX1L prenylcysteine oxidase 1 like protein-coding gene gene with protein product Approved 5q32 05q32 MGC3265 2006-08-08 2016-10-05 78991 ENSG00000145882 OTTHUMG00000130052 uc003lqk.3 NM_024028 CCDS4296 Q8NBM8 12477932 MGI:3606062 RGD:1563290 PCYOX1L +HGNC:8754 PCYT1A phosphate cytidylyltransferase 1, choline, alpha protein-coding gene gene with protein product Approved 3q29 03q29 "CT|CTPCT" phosphate cytidylyltransferase 1, choline, alpha isoform PCYT1 phosphate cytidylyltransferase 1, choline, alpha isoform 1999-05-05 2005-09-05 2014-11-19 5130 ENSG00000161217 OTTHUMG00000155670 uc003fwf.2 L28957 NM_005017 CCDS3315 P49585 7918629 MGI:88557 RGD:70515 PCYT1A 123695 391468 2.7.7.15 +HGNC:8755 PCYT1B phosphate cytidylyltransferase 1, choline, beta protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "CCT-beta|CTB" phosphate cytidylyltransferase 1, choline, beta isoform 1999-05-05 2005-09-05 2016-10-05 9468 ENSG00000102230 OTTHUMG00000021270 uc004dbi.4 AF052510 NM_004845 "CCDS14213|CCDS55391|CCDS55392" Q9Y5K3 9593753 MGI:2147987 RGD:708434 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PCYT1B PCYT1B 300948 2.7.7.15 +HGNC:40431 PCYT1B-AS1 PCYT1B antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.11 Xp22.11 PCYT1B antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100874088 ENSG00000236836 OTTHUMG00000021273 uc033dso.1 NR_046638 +HGNC:8756 PCYT2 phosphate cytidylyltransferase 2, ethanolamine protein-coding gene gene with protein product Approved 17q25.3 17q25.3 ET CTP:phosphoethanolamine cytidylyltransferase 1997-06-09 2016-04-01 5833 ENSG00000185813 OTTHUMG00000177956 uc002kcf.4 D84307 NM_002861 "CCDS11791|CCDS54178|CCDS58610|CCDS62364|CCDS82220" Q99447 9083101 MGI:1915921 RGD:619970 PCYT2 602679 2.7.7.14 +HGNC:14634 PDAP1 PDGFA associated protein 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "PAP1|PAP|HASPP28" PDGF associated protein 2001-02-15 2016-10-05 11333 ENSG00000106244 OTTHUMG00000154629 uc003uqe.5 U41745 NM_014891 CCDS5662 Q13442 8780057 MGI:2448536 RGD:620442 PDAP1 607075 +HGNC:8757 PDB1 Paget disease of bone 1 phenotype phenotype only Approved 6p21.3 06p21.3 PDB 1993-01-19 2008-07-03 5131 +HGNC:16033 PDB4 Paget disease of bone 4 phenotype phenotype only Approved 5q31 05q31 2001-07-03 2011-02-10 94003 11473345 606263 +HGNC:17951 PDB5 Paget disease of bone 5 phenotype phenotype only Approved 2q36 02q36 2002-01-09 2014-01-30 140777 11555792 +HGNC:17952 PDB6 Paget disease of bone 6 phenotype phenotype only Approved 10p13 10p13 2002-01-09 2014-01-30 140778 11555792 +HGNC:8759 PDC phosducin protein-coding gene gene with protein product Approved 1q31.1 01q31.1 MEKA 1990-04-10 2016-10-05 5132 ENSG00000116703 OTTHUMG00000035575 uc001gsa.5 AF076464 NM_022577 "CCDS1370|CCDS41447" P20941 8288249 MGI:98090 RGD:3277 Mutations of the Phosducin Gene|http://www.retina-international.org/files/sci-news/pdcmut.htm PDC 171490 +HGNC:8760 PDCD1 programmed cell death 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "CD279|PD1|hSLE1|PD-1" SLEB2 systemic lupus erythematosus susceptibility 2 "CD molecules|V-set domain containing" "471|590" 1994-05-24 2015-09-10 5133 ENSG00000188389 OTTHUMG00000151342 uc002wcq.5 AY206416 NM_005018 CCDS33428 Q15116 "7851902|12402038" MGI:104879 RGD:1311658 PDCD1 600244 247147 objectId:2760 CD279 +HGNC:18731 PDCD1LG2 programmed cell death 1 ligand 2 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "PD-L2|Btdc|PDL2|bA574F11.2|CD273|B7-DC" B7 dendritic cell molecule "CD molecules|Endogenous ligands|Immunoglobulin like domain containing" "471|542|594" 2003-11-14 2016-10-05 80380 ENSG00000197646 OTTHUMG00000019504 uc003zjg.5 AF344424 NM_025239 CCDS6465 Q9BQ51 11224527 MGI:1930125 RGD:1306403 PDCD1LG2 605723 CD273 +HGNC:8762 PDCD2 programmed cell death 2 protein-coding gene gene with protein product Approved 6q27 06q27 "ZMYND7|RP8" Zinc fingers MYND-type 87 1995-01-03 2014-11-19 5134 ENSG00000071994 OTTHUMG00000016083 uc003qxw.4 AJ420535 NM_002598 "CCDS5316|CCDS47521|CCDS56460|CCDS56461|CCDS56462|CCDS75557" Q16342 7606924 MGI:104643 RGD:61887 PDCD2 600866 +HGNC:28194 PDCD2L programmed cell death 2 like protein-coding gene gene with protein product Approved 19q13.11 19q13.11 MGC13096 2006-03-31 2016-06-22 2016-06-22 84306 ENSG00000126249 OTTHUMG00000182089 uc002nvj.4 BC006146 NM_032346 CCDS12438 Q9BRP1 "16311922|25566315" MGI:1915329 RGD:1589941 PDCD2L 615661 +HGNC:8763 PDCD4 programmed cell death 4 (neoplastic transformation inhibitor) protein-coding gene gene with protein product Approved 10q25.2 10q25.2 H731 nuclear antigen H731 2000-05-10 2016-10-05 27250 ENSG00000150593 OTTHUMG00000019048 uc001kzh.4 U83908 NM_014456 "CCDS7567|CCDS44478" Q53EL6 9759869 MGI:107490 RGD:620816 PDCD4 608610 +HGNC:27425 PDCD4-AS1 PDCD4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q25.2 10q25.2 2013-03-11 2013-04-23 282997 ENSG00000203497 OTTHUMG00000019045 uc057vzb.1 NR_026932 +HGNC:8764 PDCD5 programmed cell death 5 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "TFAR19|MGC9294" "TFAR19 novel apoptosis-related|TF1 cell apoptosis-related gene 19" 1999-12-10 2014-11-19 9141 ENSG00000105185 OTTHUMG00000180224 uc002ntm.4 AF014955 NM_004708 CCDS12423 O14737 9920759 MGI:1913538 RGD:1310561 PDCD5 604583 +HGNC:49885 PDCD5P1 programmed cell death 5 pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 2014-03-18 2014-03-18 100527946 ENSG00000255909 OTTHUMG00000168907 NG_027977 PGOHUM00000239699 +HGNC:49886 PDCD5P2 programmed cell death 5 pseudogene 2 pseudogene pseudogene Approved 5q13.3 05q13.3 2014-03-18 2014-03-18 100527947 ENSG00000251107 OTTHUMG00000162398 NG_027978 PGOHUM00000235660 +HGNC:8765 PDCD6 programmed cell death 6 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "ALG-2|PEF1B" apoptosis-linked gene-2 EF-hand domain containing 863 1999-12-10 2014-11-19 10016 ENSG00000249915 OTTHUMG00000090283 uc003jat.1 AF035606 NM_013232 "CCDS3854|CCDS58940|CCDS58941|CCDS75222|CCDS75223" O75340 8560270 MGI:109283 RGD:1311239 PDCD6 601057 +HGNC:8766 PDCD6IP programmed cell death 6 interacting protein protein-coding gene gene with protein product Approved 3p22.3 03p22.3 "Alix|AIP1|Hp95" ALG-2 interacting protein X programmed cell death 6-interacting protein 1999-12-10 2001-11-29 2015-08-25 10015 ENSG00000170248 OTTHUMG00000130751 uc003cfx.5 BC020066 XM_017005488 "CCDS2660|CCDS54561" Q8WUM4 9880530 MGI:1333753 RGD:68357 PDCD6IP 608074 +HGNC:49872 PDCD6IPP1 PDCD6IP pseudogene 1 pseudogene pseudogene Approved 15q11.2 15q11.2 2014-03-18 2015-01-29 100861430 ENSG00000275325 OTTHUMG00000188375 NG_031996 PGOHUM00000293129 +HGNC:49873 PDCD6IPP2 PDCD6IP pseudogene 2 pseudogene pseudogene Approved 15q13.1 15q13.1 2014-03-18 2014-03-18 646278 ENSG00000261377 OTTHUMG00000176344 NR_037599 PGOHUM00000258930 +HGNC:8767 PDCD7 programmed cell death 7 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "HES18|ES18" U11/U12 snRNP 59K 1999-12-02 2016-10-05 10081 ENSG00000090470 OTTHUMG00000133117 uc002aol.3 AF083930 NM_005707 CCDS10201 Q8N8D1 10037816 MGI:1859170 RGD:1308961 PDCD7 608138 +HGNC:8761 PDCD10 programmed cell death 10 protein-coding gene gene with protein product Approved 3q26.1 03q26.1 TFAR15 CCM3 cerebral cavernous malformations 3 1999-12-10 2016-10-12 11235 ENSG00000114209 OTTHUMG00000158415 uc003fex.5 AF022385 NM_007217 CCDS3202 Q9BUL8 15543491 MGI:1928396 RGD:1359329 LRG_651|http://www.lrg-sequence.org/LRG/LRG_651 PDCD10 609118 124142 +HGNC:13408 PDCD11 programmed cell death 11 protein-coding gene gene with protein product Approved 10q24.33 10q24.33 "KIAA0185|ALG-4|RRP5" Minor histocompatibility antigens 870 2003-04-10 2016-10-05 22984 ENSG00000148843 OTTHUMG00000018988 uc001kwy.2 D80007 XM_011539538 CCDS31276 Q14690 10229231 MGI:1341788 RGD:1304933 PDCD11 612333 +HGNC:8770 PDCL phosducin like protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "PhLP|DKFZp564M1863" 1996-07-26 2015-11-09 2016-10-05 5082 ENSG00000136940 OTTHUMG00000020624 uc004bmz.3 AF083325 NM_005388 CCDS6845 Q13371 10095058 MGI:1914716 RGD:621135 PDCL 604421 +HGNC:29524 PDCL2 phosducin like 2 protein-coding gene gene with protein product Approved 4q12 04q12 GCPHLP 2004-02-16 2015-11-09 2015-11-09 132954 ENSG00000163440 OTTHUMG00000160674 uc003hbb.3 BC034431 NM_152401 CCDS47059 Q8N4E4 12424248 MGI:1890655 RGD:1559712 PDCL2 611676 +HGNC:50340 PDCL2P1 phosducin-like 2 pseudogene 1 pseudogene pseudogene Approved Xp22.11 Xp22.11 2014-04-15 2014-04-15 653707 ENSG00000228610 OTTHUMG00000021250 NG_023356 PGOHUM00000241664 +HGNC:50341 PDCL2P2 phosducin-like 2 pseudogene 2 pseudogene pseudogene Approved 11q13.1 11q13.1 2014-04-15 2014-04-15 106480295 ENSG00000255058 OTTHUMG00000165610 NG_044216 PGOHUM00000242328 +HGNC:28860 PDCL3 phosducin like 3 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 VIAF1 2004-02-16 2015-11-09 2016-10-05 79031 ENSG00000115539 OTTHUMG00000153141 uc002tao.3 AF267853 NM_024065 CCDS33261 Q9H2J4 MGI:1916083 RGD:1309663 PDCL3 611678 +HGNC:31826 PDCL3P1 phosducin-like 3 pseudogene 1 pseudogene pseudogene Approved 8q12.1 08q12.1 2004-09-15 2014-11-19 392225 ENSG00000226301 OTTHUMG00000165327 NG_022420 PGOHUM00000249686 +HGNC:31705 PDCL3P2 phosducin-like 3 pseudogene 2 pseudogene pseudogene Approved 8q22.3 08q22.3 2005-10-06 2014-11-19 643831 NG_005684 PGOHUM00000249463 +HGNC:44504 PDCL3P3 phosducin-like 3 pseudogene 3 pseudogene pseudogene Approved 3p24.3 03p24.3 2012-11-13 2012-11-13 100132683 ENSG00000214286 OTTHUMG00000155541 NG_022197 PGOHUM00000237550 +HGNC:44505 PDCL3P4 phosducin-like 3 pseudogene 4 pseudogene pseudogene Approved 3q12.3 03q12.3 2012-11-13 2012-11-13 285359 ENSG00000244119 OTTHUMG00000159184 NR_002941 PGOHUM00000238119 +HGNC:44506 PDCL3P5 phosducin-like 3 pseudogene 5 pseudogene pseudogene Approved 6q25.1 06q25.1 2012-11-13 2012-11-13 644850 ENSG00000213089 OTTHUMG00000015825 NG_006960 PGOHUM00000243821 +HGNC:44507 PDCL3P6 phosducin-like 3 pseudogene 6 pseudogene pseudogene Approved 1p32.3 01p32.3 2012-11-13 2012-11-13 100419023 ENSG00000224255 NG_027092 PGOHUM00000244719 +HGNC:44508 PDCL3P7 phosducin-like 3 pseudogene 7 pseudogene pseudogene Approved 12q14.3 12q14.3 2012-11-13 2012-11-13 390340 ENSG00000256777 OTTHUMG00000169005 PGOHUM00000239502 +HGNC:26616 PDDC1 Parkinson disease 7 domain containing 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 FLJ34283 2005-10-26 2014-11-19 347862 ENSG00000177225 OTTHUMG00000133315 uc001lrc.4 AK128653 NM_182612 "CCDS7713|CCDS81530" Q8NB37 MGI:2387178 PDDC1 C56.974 +HGNC:8774 PDE1A phosphodiesterase 1A protein-coding gene gene with protein product Approved 2q32.1 02q32.1 phosphodiesterase 1A, calmodulin-dependent Phosphodiesterases 681 1997-02-05 2015-11-18 2015-11-18 5136 ENSG00000115252 OTTHUMG00000132596 uc002uoq.3 XM_011511323 "CCDS2285|CCDS33344|CCDS58741|CCDS74612" P54750 "8557689|11342109" MGI:1201792 RGD:68329 PDE1A 171890 objectId:1294 3.1.4.17 +HGNC:8775 PDE1B phosphodiesterase 1B protein-coding gene gene with protein product Approved 12q13 12q13 PDES1B phosphodiesterase 1B, calmodulin-dependent Phosphodiesterases 681 1990-01-02 2015-11-18 2015-11-18 5153 ENSG00000123360 OTTHUMG00000169844 uc001sgd.3 U56976 XM_017019432 "CCDS8882|CCDS53800|CCDS73477" Q01064 "8855339|9419816" MGI:97523 RGD:3278 PDE1B 171891 objectId:1295 3.1.4.17 +HGNC:8776 PDE1C phosphodiesterase 1C protein-coding gene gene with protein product Approved 7p14.3 07p14.3 Hcam3 "phosphodiesterase 1C, calmodulin-dependent (70kD)|phosphodiesterase 1C, calmodulin-dependent 70kDa" Phosphodiesterases 681 1994-07-29 2015-11-16 2016-10-05 5137 ENSG00000154678 OTTHUMG00000023836 uc003tcp.2 U40371 NM_005020 "CCDS5437|CCDS55099|CCDS55100" Q14123 8557689 MGI:108413 RGD:68332 PDE1C 602987 objectId:1296 3.1.4.17 +HGNC:8777 PDE2A phosphodiesterase 2A protein-coding gene gene with protein product Approved 11q13.4 11q13.4 phosphodiesterase 2A, cGMP-stimulated Phosphodiesterases 681 1997-11-10 2015-11-18 2016-10-05 5138 ENSG00000186642 OTTHUMG00000102045 uc010rrc.3 U67733 NM_002599 "CCDS8216|CCDS44670|CCDS53678|CCDS73345" O00408 9210593 MGI:2446107 RGD:620965 PDE2A 602658 objectId:1297 3.1.4.17 +HGNC:8778 PDE3A phosphodiesterase 3A protein-coding gene gene with protein product Approved 12p12.2 12p12.2 CGI-PDE phosphodiesterase 3A, cGMP-inhibited Phosphodiesterases 681 1994-07-29 2015-11-18 2015-11-18 5139 ENSG00000172572 OTTHUMG00000168962 uc001reh.3 XM_017019420 CCDS31754 Q14432 "1315035|10679291" MGI:1860764 RGD:61942 PDE3A 123805 431999 objectId:1298 3.1.4.17 +HGNC:8779 PDE3B phosphodiesterase 3B protein-coding gene gene with protein product Approved 11p15.2 11p15.2 HcGIP1 phosphodiesterase 3B, cGMP-inhibited Phosphodiesterases 681 1995-10-02 2015-11-18 2015-11-18 5140 ENSG00000152270 OTTHUMG00000165898 uc001mln.4 U38178 NM_000922 CCDS7817 Q13370 "8884271|16395595" MGI:1333863 RGD:61943 PDE3B 602047 objectId:1299 3.1.4.17 +HGNC:8780 PDE4A phosphodiesterase 4A protein-coding gene gene with protein product Approved 19p13.2 19p13.2 phosphodiesterase E2 dunce homolog (Drosophila) DPDE2 "phosphodiesterase 4A, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E2)|phosphodiesterase 4A, cAMP-specific" Phosphodiesterases 681 1994-07-29 2015-11-18 2015-11-18 5141 ENSG00000065989 OTTHUMG00000180411 uc002mom.3 XM_017026865 "CCDS12238|CCDS45961|CCDS45962|CCDS45963|CCDS58649" P27815 8009369 MGI:99558 RGD:3279 PDE4A 600126 objectId:1300 3.1.4.17 +HGNC:8781 PDE4B phosphodiesterase 4B protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "phosphodiesterase E4 dunce homolog (Drosophila)|cAMP-specific 3',5'-cyclic phosphodiesterase 4B" DPDE4 "phosphodiesterase 4B, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E4)|phosphodiesterase 4B, cAMP-specific (phosphodiesterase E4 dunce homolog, Drosophila)|phosphodiesterase 4B, cAMP-specific" Phosphodiesterases 681 1994-07-29 2015-11-18 2016-10-05 5142 ENSG00000184588 OTTHUMG00000009088 uc001dcp.4 L20971 NM_002600 "CCDS632|CCDS30742|CCDS30743|CCDS72802" Q07343 MGI:99557 RGD:3280 PDE4B 600127 objectId:1301 +HGNC:8782 PDE4C phosphodiesterase 4C protein-coding gene gene with protein product Approved 19p13.11 19p13.11 phosphodiesterase E1 dunce homolog (Drosophila) DPDE1 "phosphodiesterase 4C, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E1)|phosphodiesterase 4C, cAMP-specific" Phosphodiesterases 681 1992-06-08 2015-11-18 2015-11-18 5143 ENSG00000105650 OTTHUMG00000183353 uc002nil.4 XM_017026866 "CCDS12373|CCDS42523|CCDS46016" Q08493 MGI:99556 RGD:727918 PDE4C 600128 objectId:1302 3.1.4.17 +HGNC:8783 PDE4D phosphodiesterase 4D protein-coding gene gene with protein product Approved 5q12 05q12 phosphodiesterase E3 dunce homolog (Drosophila) DPDE3 "phosphodiesterase 4D, cAMP-specific (dunce (Drosophila)-homolog phosphodiesterase E3)|phosphodiesterase 4D, cAMP-specific" Phosphodiesterases 681 1992-06-08 2015-11-18 2015-11-18 5144 ENSG00000113448 OTTHUMG00000162218 uc003jrz.5 XM_017009565 "CCDS47213|CCDS54858|CCDS54859|CCDS56369|CCDS56370|CCDS56371|CCDS56372|CCDS56373" Q08499 MGI:99555 RGD:3281 PDE4D 600129 299630 objectId:1303 3.1.4.17 +HGNC:15580 PDE4DIP phosphodiesterase 4D interacting protein protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "KIAA0477|KIAA0454|MMGL" myomegalin CMYA2 cardiomyopathy associated 2 2001-06-27 2008-07-31 2016-10-05 9659 ENSG00000178104 OTTHUMG00000013846 uc031uvq.2 "AB007923|AB007946" NM_022359 "CCDS72887|CCDS72888|CCDS72889|CCDS72890|CCDS72891|CCDS72892|CCDS72893|CCDS72894" Q5VU43 "9455484|11134006" MGI:1891434 RGD:708410 PDE4DIP 608117 +HGNC:50867 PDE4DIPP1 phosphodiesterase 4D interacting protein pseudogene 1 pseudogene pseudogene Approved 1q21.2 01q21.2 2014-07-16 2015-02-04 2015-02-04 728920 ENSG00000229828 OTTHUMG00000013879 NG_005957 PGOHUM00000296552 +HGNC:8784 PDE5A phosphodiesterase 5A protein-coding gene gene with protein product Approved 4q26 04q26 phosphodiesterase 5A, cGMP-specific Phosphodiesterases 681 1998-11-24 2015-11-18 2016-10-05 8654 ENSG00000138735 OTTHUMG00000132971 uc003idh.4 D89094 NM_001083 "CCDS3713|CCDS34055" O76074 "9714779|9642111" MGI:2651499 RGD:620995 PDE5A 603310 objectId:1304 3.1.4.17 +HGNC:8785 PDE6A phosphodiesterase 6A protein-coding gene gene with protein product Approved 5q32 05q32 RP43 PDEA phosphodiesterase 6A, cGMP-specific, rod, alpha Phosphodiesterases 681 1990-03-20 2015-11-18 2016-10-05 5145 ENSG00000132915 OTTHUMG00000130047 uc003lrg.4 XM_017009572 CCDS4299 P16499 2155175 MGI:97524 RGD:1306835 Mutations of the Phosphodiesterase type 6|http://www.retina-international.org/files/sci-news/pdemut.htm PDE6A 180071 124146 objectId:1312 3.1.4.17 +HGNC:8786 PDE6B phosphodiesterase 6B protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "CSNB3|rd1|RP40|CSNBAD2" congenital stationary night blindness 3, autosomal dominant PDEB phosphodiesterase 6B, cGMP-specific, rod, beta Phosphodiesterases 681 1991-01-15 2015-11-18 2015-11-18 5158 ENSG00000133256 OTTHUMG00000159909 uc003gap.4 BC000249 NM_000283 "CCDS33932|CCDS46993|CCDS54703" P35913 1313787 MGI:97525 RGD:1311039 PDE6B 180072 124149 objectId:1313 3.1.4.17 +HGNC:8787 PDE6C phosphodiesterase 6C protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "PDEA2|ACHM5|COD4" phosphodiesterase 6C, cGMP-specific, cone, alpha prime Phosphodiesterases 681 1995-07-13 2015-11-18 2016-10-05 5146 ENSG00000095464 OTTHUMG00000018775 uc001kiu.5 U31973 NM_006204 CCDS7429 P51160 MGI:105956 RGD:1309844 PDE6C 600827 208333 objectId:1314 3.1.4.17 +HGNC:8788 PDE6D phosphodiesterase 6D protein-coding gene gene with protein product Approved 2q37.1 02q37.1 JBTS22 phosphodiesterase 6D, cGMP-specific, rod, delta Phosphodiesterases 681 1997-11-03 2015-11-18 2016-10-05 5147 ENSG00000156973 OTTHUMG00000153785 uc002vse.2 AF045999 NM_002601 "CCDS33398|CCDS77538" O43924 "9533031|9570951" MGI:1270843 RGD:1306204 PDE6D 602676 391804 objectId:1315 3.1.4.17 +HGNC:8789 PDE6G phosphodiesterase 6G protein-coding gene gene with protein product Approved 17q21.1 17q21.1 RP57 PDEG phosphodiesterase 6G, cGMP-specific, rod, gamma Phosphodiesterases 681 1990-04-10 2015-11-18 2015-11-18 5148 ENSG00000185527 OTTHUMG00000178038 uc060llj.1 XM_017024734 CCDS11783 P18545 2155175 MGI:97526 RGD:1591130 PDE6G 180073 238998 objectId:1316 3.1.4.17 +HGNC:8790 PDE6H phosphodiesterase 6H protein-coding gene gene with protein product Approved 12p13 12p13 phosphodiesterase 6H, cGMP-specific, cone, gamma Phosphodiesterases 681 1995-07-13 2015-11-18 2015-11-18 5149 ENSG00000139053 OTTHUMG00000168743 uc001rcr.5 XM_017019431 CCDS8672 Q13956 8786098 MGI:1925850 RGD:70933 PDE6H 601190 160320 objectId:1317 3.1.4.17 +HGNC:8791 PDE7A phosphodiesterase 7A protein-coding gene gene with protein product Approved 8q13 08q13 HCP1 Phosphodiesterases 681 1994-07-21 2015-09-04 5150 ENSG00000205268 OTTHUMG00000164469 uc003xvp.4 L12052 XM_011517540 "CCDS34901|CCDS56538" Q13946 "8389765|9521885" MGI:1202402 RGD:68391 PDE7A 171885 objectId:1305 3.1.4.17 +HGNC:8792 PDE7B phosphodiesterase 7B protein-coding gene gene with protein product Approved 6q23.3 06q23.3 Phosphodiesterases 681 2000-01-07 2016-10-05 27115 ENSG00000171408 OTTHUMG00000015641 uc003qgp.4 AB038040 XM_005266931 CCDS5175 Q9NP56 10618442 MGI:1352752 RGD:621016 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=PDE7B PDE7B 604645 objectId:1306 3.1.4.17 +HGNC:8793 PDE8A phosphodiesterase 8A protein-coding gene gene with protein product Approved 15q25.3 15q25.3 HsT19550 Phosphodiesterases 681 1998-06-12 2014-11-19 5151 ENSG00000073417 OTTHUMG00000148670 uc002blh.4 AF056490 NM_002605 "CCDS10336|CCDS10337|CCDS58397" O60658 9618252 MGI:1277116 RGD:735125 PDE8A 602972 objectId:1307 3.1.4.17 +HGNC:8794 PDE8B phosphodiesterase 8B protein-coding gene gene with protein product Approved 5q13.3 05q13.3 Phosphodiesterases 681 1998-11-30 2016-10-05 8622 ENSG00000113231 OTTHUMG00000102170 uc003kfa.4 AF079529 NM_003719 "CCDS4037|CCDS34190|CCDS34191|CCDS34192|CCDS34193" O95263 9784418 MGI:2443999 RGD:735041 PDE8B 603390 226016 objectId:1308 3.1.4.17 +HGNC:8795 PDE9A phosphodiesterase 9A protein-coding gene gene with protein product Approved 21q22.3 21q22.3 Phosphodiesterases 681 1998-06-12 2014-11-19 5152 ENSG00000160191 OTTHUMG00000086825 uc002zbx.4 AF048837 XM_011529598 "CCDS13690|CCDS33567|CCDS33568|CCDS33569|CCDS33570|CCDS33571|CCDS42941|CCDS42942|CCDS42943|CCDS42944|CCDS42945|CCDS42946|CCDS42947" O76083 9624146 MGI:1277179 RGD:621035 PDE9A 602973 objectId:1309 3.1.4.17 +HGNC:8772 PDE10A phosphodiesterase 10A protein-coding gene gene with protein product Approved 6q27 06q27 cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A Phosphodiesterases 681 1999-07-30 2016-10-05 10846 ENSG00000112541 OTTHUMG00000015986 uc003quo.4 AB020593 XM_011535387 "CCDS47513|CCDS5289" Q9Y233 10373451 MGI:1345143 RGD:68434 PDE10A 610652 objectId:1310 3.1.4.17 +HGNC:8773 PDE11A phosphodiesterase 11A protein-coding gene gene with protein product Approved 2q31.2 02q31.2 Phosphodiesterases 681 2000-06-09 2016-10-05 50940 ENSG00000128655 OTTHUMG00000154188 uc002ulq.4 AJ251509 NM_001077196 "CCDS33334|CCDS42785|CCDS42786|CCDS46459" Q9HCR9 10725373 MGI:3036251 RGD:621793 PDE11A 604961 169910 objectId:1311 3.1.4.17 +HGNC:25386 PDE12 phosphodiesterase 12 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "DKFZp667B1218|2'-PDE" 2'-phosphodiesterase 2008-02-27 2014-11-18 201626 ENSG00000174840 OTTHUMG00000158599 uc003diw.5 AK074423 NM_177966 "CCDS33772|CCDS82792" Q6L8Q7 15231837 MGI:2443226 RGD:1310975 PDE12 616519 +HGNC:30012 PDF peptide deformylase (mitochondrial) protein-coding gene gene with protein product Approved 16q22.1 16q22.1 2006-03-17 2015-02-24 64146 ENSG00000258429 OTTHUMG00000171336 uc002ewx.1 AF239156 NM_022341 CCDS10875 Q9HBH1 "11060042|15489958" MGI:1915273 RGD:1582894 PDF 3.5.1.88 +HGNC:8799 PDGFA platelet derived growth factor subunit A protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "PDGF1|PDGF-A" "PDGF A-chain|platelet-derived growth factor alpha chain" platelet-derived growth factor alpha polypeptide 1986-01-01 2016-01-14 2016-10-05 5154 ENSG00000197461 OTTHUMG00000151412 uc003sis.4 XM_017012289 "CCDS34578|CCDS47524" P04085 "1505216|2536956" MGI:97527 RGD:3282 PDGFA 173430 +HGNC:8800 PDGFB platelet derived growth factor subunit B protein-coding gene gene with protein product Approved 22q13.1 22q13.1 SSV "oncogene SIS|becaplermin" SIS "platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog)|platelet-derived growth factor beta polypeptide" 2001-06-22 2016-01-14 2016-01-14 5155 ENSG00000100311 OTTHUMG00000151029 uc003axf.4 NM_002608 "CCDS13987|CCDS33650" P01127 "2991848|1661670" MGI:97528 RGD:3283 PDGFB 190040 168409 +HGNC:8801 PDGFC platelet derived growth factor C protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "SCDGF|fallotein" 2000-07-31 2016-10-05 56034 ENSG00000145431 OTTHUMG00000161803 uc003iph.3 AF091434 XM_011532124 CCDS3795 Q9NRA1 10858496 MGI:1859631 RGD:68410 PDGFC 608452 +HGNC:30620 PDGFD platelet derived growth factor D protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "SCDGF-B|MSTP036|IEGF" spinal cord derived growth factor B 2004-01-22 2015-08-25 80310 ENSG00000170962 OTTHUMG00000165953 uc001php.4 AF113216 NM_025208 "CCDS8326|CCDS41703" Q9GZP0 "11162582|11980634" MGI:1919035 RGD:621880 PDGFD 609673 +HGNC:8803 PDGFRA platelet derived growth factor receptor alpha protein-coding gene gene with protein product Approved 4q12 04q12 "CD140a|PDGFR2|GAS9" platelet-derived growth factor receptor, alpha polypeptide "Receptor Tyrosine Kinases|CD molecules|I-set domain containing" "321|471|593" 1989-05-19 2016-01-14 2016-10-12 5156 ENSG00000134853 OTTHUMG00000128699 uc003han.5 D50001 NM_006206 CCDS3495 P16234 8643452 MGI:97530 RGD:3284 LRG_309|http://www.lrg-sequence.org/LRG/LRG_309 PDGFRA 173490 124154 objectId:1803 CD140a +HGNC:8804 PDGFRB platelet derived growth factor receptor beta protein-coding gene gene with protein product Approved 5q32 05q32 "JTK12|CD140b|PDGFR1" PDGFR platelet-derived growth factor receptor, beta polypeptide "Receptor Tyrosine Kinases|CD molecules|I-set domain containing|Immunoglobulin like domain containing" "321|471|593|594" 2001-06-22 2016-01-14 2016-10-05 5159 ENSG00000113721 OTTHUMG00000130053 uc003lro.4 M21616 NM_002609 CCDS4303 P09619 MGI:97531 RGD:3285 PDGFRB 173410 138376 objectId:1804 CD140b +HGNC:8805 PDGFRL platelet derived growth factor receptor like protein-coding gene gene with protein product Approved 8p22 08p22 PRLTS platelet-derived growth factor receptor-like "I-set domain containing|Immunoglobulin like domain containing" "593|594" 1996-10-26 2016-01-14 2016-10-05 5157 ENSG00000104213 OTTHUMG00000130818 uc003wxr.3 D37965 NM_006207 CCDS6003 Q15198 MGI:1916047 RGD:1308028 PDGFRL 604584 +HGNC:8806 PDHA1 pyruvate dehydrogenase (lipoamide) alpha 1 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial PDHA 1989-06-30 2016-10-05 5160 ENSG00000131828 OTTHUMG00000021224 uc011mjc.3 XM_017029574 "CCDS14192|CCDS55380|CCDS55381|CCDS55382" P08559 MGI:97532 RGD:3286 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PDHA1 PDHA1 300502 124161 1.2.4.1 +HGNC:44636 PDHA1P1 pyruvate dehydrogenase (lipoamide) alpha 1 pseudogene 1 pseudogene pseudogene Approved 3p14.3 03p14.3 2012-11-23 2012-11-23 100132534 ENSG00000270772 OTTHUMG00000184386 NG_007303 PGOHUM00000259829 +HGNC:8807 PDHA2 pyruvate dehydrogenase (lipoamide) alpha 2 protein-coding gene gene with protein product Approved 4q22.3 04q22.3 PDHAL 1990-07-11 2016-10-05 5161 ENSG00000163114 OTTHUMG00000130990 uc003htr.5 NM_005390 CCDS3644 P29803 MGI:97533 RGD:620095 PDHA2 179061 1.2.4.1 +HGNC:8808 PDHB pyruvate dehydrogenase (lipoamide) beta protein-coding gene gene with protein product Approved 3p14.3 03p14.3 1989-06-30 2016-10-05 5162 ENSG00000168291 OTTHUMG00000159157 uc003dkf.4 NR_033384 "CCDS2890|CCDS54602|CCDS82795" P11177 MGI:1915513 RGD:1359146 PDHB 179060 124164 1.2.4.1 +HGNC:21350 PDHX pyruvate dehydrogenase complex component X protein-coding gene gene with protein product Approved 11p13 11p13 "E3BP|proX|PDX1|OPDX|DLDBP" 2003-06-24 2015-11-20 2015-11-20 8050 ENSG00000110435 OTTHUMG00000166491 uc001mvt.4 U82328 NM_003477 "CCDS7896|CCDS44569|CCDS53616" O00330 "9467010|12372595" MGI:1351627 RGD:1566332 PDHX 608769 124166 +HGNC:14180 PDIA2 protein disulfide isomerase family A member 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "PDA2|PDI|PDIR" PDIP "protein disulfide isomerase, pancreatic|protein disulfide isomerase-associated 2|protein disulfide isomerase family A, member 2" Protein disulfide isomerases 692 2000-12-21 2005-03-03 2015-11-16 2015-11-16 64714 ENSG00000185615 OTTHUMG00000064891 uc002cgo.2 U19948 NM_006849 CCDS42089 Q13087 8561901 MGI:1916441 RGD:1305164 PDIA2 608012 5.3.4.1 +HGNC:4606 PDIA3 protein disulfide isomerase family A member 3 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "P58|ERp61|ERp57|ERp60|GRP57|PI-PLC|HsT17083" GRP58 "glucose regulated protein, 58kDa|protein disulfide isomerase-associated 3|protein disulfide isomerase family A, member 3" Protein disulfide isomerases 692 1997-06-09 2005-03-03 2015-11-16 2016-10-05 2923 ENSG00000167004 OTTHUMG00000044444 uc001zsu.4 NM_005313 CCDS10101 P30101 8974399 MGI:95834 RGD:68430 PDIA3 602046 5.3.4.1 +HGNC:4607 PDIA3P1 protein disulfide isomerase family A member 3 pseudogene 1 pseudogene pseudogene Approved 1q21.1 01q21.1 GRP58P glucose regulated protein, 58kDa pseudogene PDIA3P "protein disulfide isomerase-associated 3 pseudogene|protein disulfide isomerase family A, member 3 pseudogene|protein disulfide isomerase family A, member 3 pseudogene 1" 1997-07-22 2013-10-28 2015-11-16 2015-11-16 171423 ENSG00000180867 OTTHUMG00000041049 U75886 NR_002305 9205111 PGOHUM00000244962 +HGNC:49403 PDIA3P2 protein disulfide isomerase family A member 3 pseudogene 2 pseudogene pseudogene Approved 15q15.3 15q15.3 protein disulfide isomerase family A, member 3 pseudogene 2 2013-10-28 2015-11-16 2015-11-16 106481687 ENSG00000224677 OTTHUMG00000059904 NG_045314 PGOHUM00000247100 +HGNC:30167 PDIA4 protein disulfide isomerase family A member 4 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "ERP70|ERP72" "protein disulfide isomerase-associated 4|protein disulfide isomerase family A, member 4" Protein disulfide isomerases 692 2005-03-02 2015-11-16 2016-10-05 9601 ENSG00000155660 OTTHUMG00000150248 uc003wff.3 BC001928 NM_004911 CCDS5893 P13667 "2549034|2002068" MGI:104864 RGD:619835 PDIA4 5.3.4.1 +HGNC:24811 PDIA5 protein disulfide isomerase family A member 5 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "PDIR|FLJ30401" "protein disulfide isomerase-associated 5|protein disulfide isomerase family A, member 5" Protein disulfide isomerases 692 2005-03-02 2015-11-16 2015-11-16 10954 ENSG00000065485 OTTHUMG00000159558 uc003egc.3 AK054963 NM_006810 CCDS3020 Q14554 7556671 MGI:1919849 RGD:1359236 PDIA5 616942 5.3.4.1 +HGNC:30168 PDIA6 protein disulfide isomerase family A member 6 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "P5|ERp5" protein disulfide isomerase-related protein TXNDC7 "thioredoxin domain containing 7 (protein disulfide isomerase)|protein disulfide isomerase-associated 6|protein disulfide isomerase family A, member 6" Protein disulfide isomerases 692 2004-03-11 2005-03-03 2015-11-16 2015-11-16 10130 ENSG00000143870 OTTHUMG00000090479 uc002raw.4 BC001312 NM_005742 "CCDS1675|CCDS62852|CCDS62853|CCDS62854|CCDS62855" Q15084 "7590364|12204115" MGI:1919103 RGD:628688 PDIA6 611099 5.3.4.1 +HGNC:18981 PDIK1L PDLIM1 interacting kinase 1 like protein-coding gene gene with protein product Approved 1p36.11 01p36.11 CLIK1L 2004-11-26 2016-10-05 149420 ENSG00000175087 OTTHUMG00000007511 uc010oew.3 AF411102 NM_152835 CCDS274 Q8N165 14631099 MGI:2385213 RGD:1307476 PDIK1L 610785 objectId:2141 +HGNC:27338 PDILT protein disulfide isomerase like, testis expressed protein-coding gene gene with protein product Approved 16p12.3 16p12.3 PDIA7 "protein disulfide isomerase family A, member 7|protein disulfide isomerase-like protein of the testis" protein disulfide isomerase-like, testis expressed Protein disulfide isomerases 692 2009-02-20 2016-03-29 2016-03-29 204474 ENSG00000169340 OTTHUMG00000131487 uc002dhc.2 NM_174924 CCDS10584 Q8N807 15475357 MGI:1919080 RGD:1307822 PDILT +HGNC:8809 PDK1 pyruvate dehydrogenase kinase 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "pyruvate dehydrogenase kinase, isoenzyme 1|pyruvate dehydrogenase kinase, isozyme 1" 1996-08-14 2016-01-06 2016-01-06 5163 ENSG00000152256 OTTHUMG00000132285 uc002uhs.5 L42450 NM_002610 "CCDS2250|CCDS63059" Q15118 7499431 MGI:1926119 RGD:69427 PDK1 602524 +HGNC:49808 PDK1P1 pyruvate dehydrogenase kinase 1 pseudogene 1 pseudogene pseudogene Approved 9p21.1 09p21.1 pyruvate dehydrogenase kinase, isozyme 1 pseudogene 1 2014-03-06 2016-01-06 2016-01-06 100421194 NG_023886 PGOHUM00000236421 +HGNC:8810 PDK2 pyruvate dehydrogenase kinase 2 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 PDHK2 "pyruvate dehydrogenase kinase, isoenzyme 2|pyruvate dehydrogenase kinase, isozyme 2" 1996-08-14 2016-01-06 2016-01-06 5164 ENSG00000005882 OTTHUMG00000161948 uc002iqc.4 L42451 NM_002611 "CCDS11559|CCDS56039" Q15119 7499431 MGI:1343087 RGD:69428 PDK2 602525 objectId:2142 +HGNC:8811 PDK3 pyruvate dehydrogenase kinase 3 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "pyruvate dehydrogenase kinase, isoenzyme 3|pyruvate dehydrogenase kinase, isozyme 3" 1996-08-14 2016-01-06 2016-10-05 5165 ENSG00000067992 OTTHUMG00000021269 uc004dbg.4 L42452 NM_005391 "CCDS14212|CCDS48088" Q15120 7499431 MGI:2384308 RGD:1593276 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PDK3 PDK3 300906 356172 objectId:2143 +HGNC:8812 PDK4 pyruvate dehydrogenase kinase 4 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "pyruvate dehydrogenase kinase, isoenzyme 4|pyruvate dehydrogenase kinase, isozyme 4" 1996-08-14 2016-01-06 2016-10-05 5166 ENSG00000004799 OTTHUMG00000153977 uc003uoa.4 U54617 NM_002612 CCDS5643 Q16654 7499431 MGI:1351481 RGD:69061 PDK4 602527 objectId:2144 +HGNC:2067 PDLIM1 PDZ and LIM domain 1 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "CLP-36|hCLIM1|CLP36" "carboxyl terminal LIM domain protein 1|elfin" CLIM1 PDZ and LIM domain 1 (elfin) "LIM domain containing|PDZ domain containing" "1218|1220" 1998-01-21 2008-07-29 2016-10-05 9124 ENSG00000107438 OTTHUMG00000018810 uc001kkh.5 U90878 NM_020992 CCDS7441 O00151 10861853 MGI:1860611 RGD:68324 PDLIM1 605900 +HGNC:20026 PDLIM1P1 PDZ and LIM domain 1 pseudogene 1 pseudogene pseudogene Approved 14q21.3 14q21.3 PDLIM1P PDZ and LIM domain 1 pseudogene 2003-01-13 2013-07-22 2013-07-22 2014-11-19 326616 ENSG00000270788 OTTHUMG00000184391 NG_002606 PGOHUM00000248164 +HGNC:48945 PDLIM1P2 PDZ and LIM domain 1 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2013-07-22 2013-07-22 100419426 ENSG00000265881 OTTHUMG00000179030 NG_026158 PGOHUM00000236979 +HGNC:48946 PDLIM1P3 PDZ and LIM domain 1 pseudogene 3 pseudogene pseudogene Approved 17q11.1 17q11.1 2013-07-22 2013-07-22 100419427 ENSG00000264172 OTTHUMG00000179165 NG_026160 PGOHUM00000236993 +HGNC:48947 PDLIM1P4 PDZ and LIM domain 1 pseudogene 4 pseudogene pseudogene Approved 3q12.1 03q12.1 2013-07-22 2013-07-22 100419185 ENSG00000249274 OTTHUMG00000159051 NG_025722 PGOHUM00000238114 +HGNC:13992 PDLIM2 PDZ and LIM domain 2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 mystique "LIM domain containing|PDZ domain containing" "1218|1220" 2000-12-08 2016-02-16 2016-04-25 64236 ENSG00000120913 OTTHUMG00000164270 uc064laq.1 AY007729 NM_021630 "CCDS34860|CCDS34861|CCDS6032" Q96JY6 MGI:2384850 RGD:1359203 PDLIM2 609722 +HGNC:20767 PDLIM3 PDZ and LIM domain 3 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 ALP "LIM domain containing|PDZ domain containing" "1218|1220" 2004-02-06 2016-10-12 27295 ENSG00000154553 OTTHUMG00000160412 uc003ixw.5 AF002280 NM_014476 "CCDS3844|CCDS47172|CCDS75218|CCDS75219" Q53GG5 "10063829|8828038" MGI:1859274 RGD:620427 LRG_752|http://www.lrg-sequence.org/LRG/LRG_752 PDLIM3 605889 +HGNC:16501 PDLIM4 PDZ and LIM domain 4 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 RIL "LIM domain containing|PDZ domain containing" "1218|1220" 2004-02-12 2014-11-19 8572 ENSG00000131435 OTTHUMG00000059645 uc003kwn.4 AF153882 NM_003687 "CCDS4152|CCDS47261" P50479 9573374 MGI:1353470 RGD:3575 PDLIM4 603422 +HGNC:17468 PDLIM5 PDZ and LIM domain 5 protein-coding gene gene with protein product Approved 4q22.3 04q22.3 "LIM|Enh" "LIM domain containing|PDZ domain containing" "1218|1220" 2005-01-12 2016-10-05 10611 ENSG00000163110 OTTHUMG00000130973 uc003hti.5 AF061258 XM_006714066 "CCDS3641|CCDS47103|CCDS47104|CCDS58915|CCDS58916|CCDS58917|CCDS75166|CCDS47102" Q96HC4 15346770 MGI:1927489 RGD:621076 PDLIM5 605904 +HGNC:22958 PDLIM7 PDZ and LIM domain 7 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 ENIGMA PDZ and LIM domain 7 (enigma) "LIM domain containing|PDZ domain containing" "1218|1220" 2004-02-11 2015-11-26 2015-11-26 9260 ENSG00000196923 OTTHUMG00000130853 uc003mhc.3 BC001093 NM_005451 "CCDS4422|CCDS4423|CCDS4424" Q9NR12 11874232 MGI:1914649 RGD:628769 PDLIM7 605903 +HGNC:9279 PDP1 pyruvate dehyrogenase phosphatase catalytic subunit 1 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "PDP|PDH|PPM2A" protein phosphatase, Mg2+/Mn2+ dependent 2A PPM2C protein phosphatase 2C, magnesium-dependent, catalytic subunit Protein phosphatases, Mg2+/Mn2+ dependent 701 1994-07-06 2009-06-12 2009-06-12 2015-11-20 54704 ENSG00000164951 OTTHUMG00000164356 uc003yge.4 AF155661 NM_018444 "CCDS6259|CCDS55262" Q9P0J1 8396421 MGI:2685870 RGD:620393 PDP1 605993 158072 3.1.3.43 +HGNC:30263 PDP2 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "KIAA1348|PPM2C2|PPM2B" "protein phosphatase 2C, magnesium-dependent, catalytic subunit 2|protein phosphatase, Mg2+/Mn2+ dependent 2B|[pyruvate dehydrogenase (acetyl-transferring)]-phosphatase" Protein phosphatases, Mg2+/Mn2+ dependent 701 2009-06-12 2016-10-12 57546 ENSG00000172840 OTTHUMG00000137512 uc002eqk.3 AB037769 NM_020786 CCDS10822 Q9P2J9 9651365 MGI:1918878 RGD:628812 LRG_1088|http://www.lrg-sequence.org/LRG/LRG_1088 PDP2 615499 3.1.3.43 +HGNC:8816 PDPK1 3-phosphoinositide dependent protein kinase 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 PDK1 PkB kinase 1998-03-23 2014-03-20 2015-08-25 5170 ENSG00000140992 OTTHUMG00000128874 uc002cqs.5 AF017995 XM_017023271 "CCDS10472|CCDS10473|CCDS58411" O15530 "9094314|9445477" MGI:1338068 RGD:620307 PDPK1 605213 objectId:1519 +HGNC:49897 PDPK2P 3-phosphoinositide dependent protein kinase 2, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 2014-03-20 2014-03-20 653650 ENSG00000205918 OTTHUMG00000177286 NG_005595 Q6A1A2 PGOHUM00000262269 +HGNC:29602 PDPN podoplanin protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "T1A-2|Gp38|aggrus|GP40|PA2.26" lung type I cell membrane associated glycoprotein 2005-07-08 2014-11-19 10630 ENSG00000162493 OTTHUMG00000007912 uc001avd.4 "AB127958|AY194238" NM_006474 "CCDS30602|CCDS41266|CCDS44060|CCDS53270" Q86YL7 "10393083|9651190" MGI:103098 RGD:61819 PDPN 608863 +HGNC:30264 PDPR pyruvate dehydrogenase phosphatase regulatory subunit protein-coding gene gene with protein product Approved 16q22.1 16q22.1 PDP3 2010-08-24 2015-08-25 55066 ENSG00000090857 OTTHUMG00000176963 uc002eyf.2 NM_017990 "CCDS45520|CCDS82007" Q8NCN5 9395502 MGI:2442188 RGD:1308307 PDPR +HGNC:8817 PDR pigment disorder, reticulate phenotype phenotype only Approved Xp22-p21 Xp22-p21 1993-07-22 2014-01-30 5171 7977467 +HGNC:16119 PDRG1 p53 and DNA damage regulated 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 dJ310O13.3 C20orf126 "chromosome 20 open reading frame 126|p53 and DNA-damage regulated 1" 2001-07-17 2004-10-07 2015-11-16 2015-11-16 81572 ENSG00000088356 OTTHUMG00000032196 uc002wxd.4 AL031658 NM_030815 CCDS13194 Q9NUG6 14562055 MGI:1915809 RGD:1305096 PDRG1 610789 +HGNC:29088 PDS5A PDS5 cohesin associated factor A protein-coding gene gene with protein product Approved 4p14 04p14 "KIAA0648|PIG54|SCC-112" PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) 2007-06-20 2014-11-17 2014-11-19 23244 ENSG00000121892 OTTHUMG00000160582 uc003guv.4 AF294791 NM_015200 "CCDS47045|CCDS54759" Q29RF7 "11076961|15855230|24141881" MGI:1918771 RGD:1307094 PDS5A 613200 +HGNC:20418 PDS5B PDS5 cohesin associated factor B protein-coding gene gene with protein product Approved 13q13.1 13q13.1 "AS3|KIAA0979|FLJ23236|CG008" APRIN "androgen-induced proliferation inhibitor|PDS5, regulator of cohesion maintenance, homolog B (S. cerevisiae)" 2003-02-24 2007-07-18 2014-11-17 2016-10-05 23047 ENSG00000083642 OTTHUMG00000016704 uc010abf.4 AB023196 NM_015032 CCDS41878 Q9NTI5 "8812419|10215036|24141881" MGI:2140945 RGD:1310838 PDS5B 605333 +HGNC:17759 PDSS1 prenyl (decaprenyl) diphosphate synthase, subunit 1 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "TPT|COQ1" coenzyme Q1 homolog (yeast) TPRT trans-prenyltransferase 2004-01-29 2006-02-14 2006-02-14 2016-10-05 23590 ENSG00000148459 OTTHUMG00000017844 uc001isv.4 AF118395 NM_001321979 CCDS31168 Q5T2R2 10972372 MGI:1889278 RGD:2319976 PDSS1 607429 252458 +HGNC:49740 PDSS1P1 prenyl (decaprenyl) diphosphate synthase, subunit 1 pseudogene 1 pseudogene pseudogene Approved 9p24.1 09p24.1 2014-02-13 2014-02-13 100129248 ENSG00000182347 OTTHUMG00000019488 NG_017146 PGOHUM00000263211 +HGNC:49741 PDSS1P2 prenyl (decaprenyl) diphosphate synthase, subunit 1 pseudogene 2 pseudogene pseudogene Approved 2p21 not on reference assembly 02p21 not on reference assembly 2014-02-13 2015-02-09 100996500 ENSG00000224637 OTTHUMG00000152784 PGOHUM00000250455 +HGNC:23041 PDSS2 prenyl (decaprenyl) diphosphate synthase, subunit 2 protein-coding gene gene with protein product Approved 6q21 06q21 bA59I9.3 C6orf210 chromosome 6 open reading frame 210 2003-11-26 2006-02-14 2006-02-14 2014-11-19 57107 ENSG00000164494 OTTHUMG00000059359 uc003prt.3 AF254956 NM_020381 CCDS5059 Q86YH6 16262699 MGI:1918615 RGD:1359372 PDSS2 610564 205928 +HGNC:6107 PDX1 pancreatic and duodenal homeobox 1 protein-coding gene gene with protein product Approved 13q12.2 13q12.2 "IDX-1|STF-1|PDX-1|MODY4" somatostatin transcription factor 1 IPF1 insulin promoter factor 1, homeodomain transcription factor HOXL subclass homeoboxes 518 1995-01-30 2006-12-01 2006-12-01 2016-10-05 3651 ENSG00000139515 OTTHUMG00000016638 uc001urt.3 AF035260 NM_000209 CCDS9327 P52945 7590740 MGI:102851 RGD:62387 PDX1 600733 8544 124173 +HGNC:43698 PDX1-AS1 PDX1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.2 13q12.2 "PLUTO|HI-LNC71" PDX1 antisense RNA 1 (non-protein coding) 2012-01-31 2012-08-15 2016-10-03 100861550 ENSG00000247381 OTTHUMG00000170578 uc058wbw.1 "BX383058|CR593175" NR_047484 +HGNC:28995 PDXDC1 pyridoxal dependent decarboxylase domain containing 1 protein-coding gene gene with protein product Approved 16p13.11 16p13.11 KIAA0251 2007-03-26 2016-06-08 2016-06-08 23042 ENSG00000179889 OTTHUMG00000166304 uc002dda.6 "AK025504|BX647809" NM_015027 "CCDS32393|CCDS66954|CCDS66957|CCDS73830|CCDS73831|CCDS66955" Q6P996 MGI:1920909 RGD:9072228 PDXDC1 614244 +HGNC:27559 PDXDC2P pyridoxal dependent decarboxylase domain containing 2, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 DKFZp761H1120 PDXDC2 pyridoxal-dependent decarboxylase domain containing 2 2007-03-26 2010-09-02 2016-06-08 2016-06-08 283970 ENSG00000255185 OTTHUMG00000167595 uc002eyc.4 NR_003610 Q6P474 PGOHUM00000293643 +HGNC:8819 PDXK pyridoxal (pyridoxine, vitamin B6) kinase protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "PNK|PKH|FLJ21324|PRED79|FLJ31940|MGC15873" "C21orf97|C21orf124" "chromosome 21 open reading frame 97|chromosome 21 open reading frame 124" 1998-12-03 2015-08-25 8566 ENSG00000160209 OTTHUMG00000086870 uc002zdm.5 U89606 NM_003681 "CCDS13699|CCDS82679" O00764 9099727 MGI:1351869 RGD:621324 PDXK 179020 2.7.1.35 +HGNC:30259 PDXP pyridoxal phosphatase protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "dJ37E16.5|FLJ32703|CIN" chronophin pyridoxal (pyridoxine, vitamin B6) phosphatase HAD Asp-based protein phosphatases 702 2004-02-11 2016-01-18 2016-10-05 57026 ENSG00000241360 OTTHUMG00000044618 uc003atm.2 BC064922 NM_020315 CCDS13953 Q96GD0 "14522954|15580268" MGI:1919282 RGD:1586212 PDXP 609246 3.1.3.74 +HGNC:8820 PDYN prodynorphin protein-coding gene gene with protein product Approved 20p13 20p13 "PENKB|ADCA" "preproenkephalin B|rimorphin|beta-neoendorphin|dynorphin|leu-enkephalin|leumorphin|neoendorphin-dynorphin-enkephalin prepropeptide" SCA23 spinocerebellar ataxia 23 Endogenous ligands 542 2001-06-22 2016-10-12 5173 ENSG00000101327 OTTHUMG00000031683 uc021vzu.2 XM_011529246 CCDS13023 P01213 21035104 MGI:97535 RGD:62054 LRG_667|http://www.lrg-sequence.org/LRG/LRG_667 PDYN 131340 212594 +HGNC:18486 PDZD2 PDZ domain containing 2 protein-coding gene gene with protein product Approved 5p14.1 05p14.1 KIAA0300 PDZK3 PDZ domain containing 3 PDZ domain containing 1220 2002-04-10 2006-01-24 2006-01-24 2015-08-25 23037 ENSG00000133401 OTTHUMG00000161981 uc003jhl.4 AB002298 XM_011513992 CCDS34137 O15018 9205841 MGI:1922394 RGD:619958 PDZD2 610697 +HGNC:19891 PDZD3 PDZ domain containing 3 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "FLJ22756|IKEPP" PDZK2 PDZ domain containing 2 PDZ domain containing 1220 2003-01-13 2006-01-24 2006-01-24 2014-11-19 79849 ENSG00000172367 OTTHUMG00000166224 uc001pvz.4 AK091966 NM_024791 "CCDS8417|CCDS53719" Q86UT5 11950846 MGI:2429554 RGD:1559807 PDZD3 607146 +HGNC:21167 PDZD4 PDZ domain containing 4 protein-coding gene gene with protein product Approved Xq28 Xq28 "KIAA1444|LU1|FLJ34125|PDZRN4L|LNX5" PDZK4 PDZ domain containing 1220 2004-04-20 2006-01-24 2016-05-23 57595 ENSG00000067840 OTTHUMG00000024209 uc004fiz.2 AK091444 NM_032512 "CCDS14732|CCDS78517|CCDS78518" Q76G19 "10819331|15077175" MGI:2443483 RGD:1561214 PDZD4 300634 +HGNC:26257 PDZD7 PDZ domain containing 7 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "FLJ23209|bA108L7.8" PDZK7 "PDZ domain containing|USH2 complex " "1220|1244" 2004-02-17 2006-01-24 2016-10-05 79955 ENSG00000186862 OTTHUMG00000018916 uc001kso.3 AK026862 NM_024895 "CCDS31269|CCDS73182" Q9H5P4 12477932 MGI:3608325 RGD:1309882 PDZD7 612971 239898 +HGNC:26974 PDZD8 PDZ domain containing 8 protein-coding gene gene with protein product Approved 10q25.3-q26.11 10q25.3-q26.11 "bA129M16.2|FLJ34427" PDZK8 PDZ domain containing 1220 2004-03-16 2006-01-24 2016-10-11 118987 ENSG00000165650 OTTHUMG00000019122 uc001lde.2 AL122051 NM_173791 CCDS7600 Q8NEN9 20573829 MGI:2677270 RGD:1308622 PDZD8 614235 +HGNC:28740 PDZD9 PDZ domain containing 9 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 MGC50721 C16orf65 chromosome 16 open reading frame 65 PDZ domain containing 1220 2006-03-22 2010-04-14 2010-04-14 2016-10-05 255762 ENSG00000155714 OTTHUMG00000131586 uc059rxp.1 BC039562 NM_173806 CCDS10602 Q8IXQ8 12477932 MGI:1915233 RGD:1560558 PDZD9 +HGNC:28034 PDZD11 PDZ domain containing 11 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 PDZK11 PDZ domain containing 1220 2004-09-15 2006-01-24 2015-08-25 51248 ENSG00000120509 OTTHUMG00000021771 uc004dyd.2 AF151061 NM_016484 CCDS14400 Q5EBL8 "11042152|12975309" MGI:1919871 RGD:1560007 PDZD11 300632 +HGNC:8821 PDZK1 PDZ domain containing 1 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 "PDZD1|NHERF3" PDZ domain containing 1220 1998-07-15 2016-10-05 5174 ENSG00000174827 OTTHUMG00000013735 uc001eoo.3 AF012281 NM_002614 "CCDS72859|CCDS72860" Q5T2W1 9461128 MGI:1928901 RGD:70924 PDZK1 603831 +HGNC:16887 PDZK1IP1 PDZK1 interacting protein 1 protein-coding gene gene with protein product Approved 1p33 01p33 "DD96|MAP17|SPAP" 2005-04-14 2014-11-19 10158 ENSG00000162366 OTTHUMG00000007852 uc057ghl.1 U21049 NM_005764 CCDS546 Q13113 "9815914|8701988|12754212|12837682" MGI:1914432 RGD:620952 PDZK1IP1 607178 +HGNC:31974 PDZK1P1 PDZ domain containing 1 pseudogene 1 pseudogene pseudogene Approved 1q21.2 01q21.2 "OTTHUMT00000038524|OTTHUMG00000074107" PDZK1P2 PDZ domain containing 1 pseudogene 2 2007-03-19 2015-02-11 100034743 ENSG00000244211 OTTHUMG00000074107 AL390725 NR_111936 A8MUH7 PGOHUM00000295880 +HGNC:51488 PDZPH1P PDZ and pleckstrin homology domains 1, pseudogene pseudogene pseudogene Approved 5q21.2 05q21.2 PDZ domain containing 1220 2015-01-19 2015-01-19 105379197 ENSG00000226926 OTTHUMG00000154669 NG_046694 MGI:1916489 +HGNC:17704 PDZRN3 PDZ domain containing ring finger 3 protein-coding gene gene with protein product Approved 3p13 03p13 "KIAA1095|SEMACAP3|LNX3" likely ortholog of mouse semaF cytoplasmic domain associated protein 3 "Ring finger proteins|PDZ domain containing" "58|1220" 2004-04-20 2008-08-14 2016-10-05 23024 ENSG00000121440 OTTHUMG00000158865 uc003dpl.2 AB029018 XM_041363 "CCDS33789|CCDS77770|CCDS77771" Q9UPQ7 10470851 MGI:1933157 RGD:1305250 PDZRN3 609729 +HGNC:40814 PDZRN3-AS1 PDZRN3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p13 03p13 PDZRN3 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 101927249 ENSG00000239677 OTTHUMG00000158864 uc062lol.1 NR_046681 +HGNC:30552 PDZRN4 PDZ domain containing ring finger 4 protein-coding gene gene with protein product Approved 12q12 12q12 "DKFZp434B0417|LNX4|FLJ33777|IMAGE5767589" similar to semaF cytoplasmic domain associated protein 3 "Ring finger proteins|PDZ domain containing" "58|1220" 2004-04-20 2008-08-14 2008-08-14 29951 ENSG00000165966 OTTHUMG00000169364 uc010skn.3 AK094690 NM_013377 "CCDS8739|CCDS53777" Q6ZMN7 "11230166|15010864" MGI:3056996 RGD:1308860 PDZRN4 609730 +HGNC:8822 PEA15 phosphoprotein enriched in astrocytes 15 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "HMAT1|MAT1|PED|PEA-15|MAT1H|HUMMAT1H" "Phosphoprotein enriched in astrocytes, 15kD|homolog of mouse MAT-1 oncogene" Death effector domain containing 1019 1998-11-06 2016-10-05 8682 ENSG00000162734 OTTHUMG00000031605 uc001fvk.4 Y13736 NM_003768 "CCDS1199|CCDS72954|CCDS76227" Q15121 9205133 MGI:104799 RGD:1306055 PEA15 603434 +HGNC:29431 PEAK1 pseudopodium enriched atypical kinase 1 protein-coding gene gene with protein product Approved 15q24.3 15q24.3 "KIAA2002|sgk269" 2013-09-27 2016-01-13 2016-01-13 79834 ENSG00000173517 OTTHUMG00000172618 XM_011522033 CCDS42062 Q9H792 "16879967|20534451" MGI:2442366 RGD:1312026 614248 +HGNC:33631 PEAR1 platelet endothelial aggregation receptor 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "JEDI|FLJ00193" MEGF12 multiple EGF-like-domains 12 2007-10-18 2007-10-25 2007-10-25 2014-11-19 375033 ENSG00000187800 OTTHUMG00000041293 uc057mdp.1 AK098809 NM_001080471 CCDS30892 Q5VY43 15851471 MGI:1920432 RGD:1305653 PEAR1 610278 +HGNC:8630 PEBP1 phosphatidylethanolamine binding protein 1 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "RKIP|HCNP|PEBP" "Raf kinase inhibitory protein|hippocampal cholinergic neurostimulating peptide" PBP prostatic binding protein 1988-04-15 2006-02-16 2006-02-16 2016-10-05 5037 ENSG00000089220 OTTHUMG00000168860 uc001twu.2 X85033 NM_002567 CCDS9187 P30086 15782137 MGI:1344408 RGD:62017 PEBP1 604591 I51.002 +HGNC:20054 PEBP1P1 phosphatidylethanolamine binding protein 1 pseudogene 1 pseudogene pseudogene Approved 14q32.2 14q32.2 PBPP1 prostatic binding protein pseudogene 1 2003-01-13 2010-01-06 2010-01-06 2014-11-19 326614 ENSG00000259059 OTTHUMG00000171438 NG_002604 PGOHUM00000247888 +HGNC:44344 PEBP1P2 phosphatidylethanolamine binding protein 1 pseudogene 2 pseudogene pseudogene Approved 2p11.2 02p11.2 2012-08-15 2016-08-01 647307 ENSG00000270532 OTTHUMG00000184503 NG_021511 PGOHUM00000297942 +HGNC:44345 PEBP1P3 phosphatidylethanolamine binding protein 1 pseudogene 3 pseudogene pseudogene Approved 1q31.3 01q31.3 2012-08-15 2014-11-21 100129570 ENSG00000236278 OTTHUMG00000035657 NG_027979 PGOHUM00000244386 +HGNC:28319 PEBP4 phosphatidylethanolamine binding protein 4 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "MGC22776|CORK1|hPEBP4" cousin-of-RKIP 1 protein 2009-07-09 2015-11-20 2015-11-20 157310 ENSG00000134020 OTTHUMG00000163749 uc003xcn.2 BC020779 NM_144962 CCDS43724 Q96S96 "15302887|16865237" MGI:1920773 RGD:1593295 PEBP4 612473 +HGNC:8823 PECAM1 platelet and endothelial cell adhesion molecule 1 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 CD31 CD31 antigen platelet/endothelial cell adhesion molecule 1 "CD molecules|Immunoglobulin like domain containing" "471|594" 1995-11-29 2016-04-01 2016-04-01 5175 ENSG00000261371 OTTHUMG00000175829 uc032fos.2 "L34631|M37780" NM_000442 CCDS74132 P16284 "8661055|1690453" MGI:97537 RGD:61927 173445 CD31 +HGNC:18281 PECR peroxisomal trans-2-enoyl-CoA reductase protein-coding gene gene with protein product Approved 2q35 02q35 "HSA250303|TERP|SDR29C1" short chain dehydrogenase/reductase family 29C, member 1 Short chain dehydrogenase/reductase superfamily 743 2004-01-09 2014-11-19 55825 ENSG00000115425 OTTHUMG00000154825 uc002vft.4 AF119841 NM_018441 CCDS33375 Q9BY49 "10811639|11669066|19027726" MGI:2148199 RGD:70925 PECR 605843 1.3.1.38 +HGNC:8825 PEE1 preeclampsia/eclampsia 1 phenotype phenotype only Approved 4q25-qter 04q25-qter PIH pregnancy-induced hypertension (pre-eclampsia, eclampsia, toxemia of pregnancy included) 1997-09-12 2014-01-30 5177 9150163 189800 +HGNC:30009 PEF1 penta-EF-hand domain containing 1 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 PEF1A peflin EF-hand domain containing 863 2005-05-09 2016-10-05 553115 ENSG00000162517 OTTHUMG00000003877 uc001bth.3 NM_012392 CCDS345 Q9UBV8 "10486255|11883899" MGI:1915148 RGD:1359536 PEF1 610033 +HGNC:8826 PEG3 paternally expressed 3 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "ZKSCAN22|KIAA0287|ZNF904|ZSCAN24" Zinc fingers C2H2-type 28 1997-05-29 2015-08-25 5178 ENSG00000198300 OTTHUMG00000171954 uc002qnv.3 AB006625 NM_006210 "CCDS12948|CCDS58684|CCDS58685" Q9GZU2 9149948 MGI:104748 RGD:2323590 PEG3 601483 299 +HGNC:35127 PEG3-AS1 PEG3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.43 19q13.43 "APEG3|NCRNA00155" "antisense PEG3 transcript|non-protein coding RNA 155" "PEG3AS|PEG3-AS" "PEG3 antisense RNA (non-protein coding)|PEG3 antisense RNA 1 (non-protein coding)" 2008-09-22 2010-11-25 2012-08-15 2014-03-19 100169890 NR_023847 "18166281|15950772|24582979" +HGNC:14005 PEG10 paternally expressed 10 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "KIAA1051|HB-1|MEF3L|RGAG3|Mar2|Mart2" 2000-11-28 2016-10-05 23089 ENSG00000242265 OTTHUMG00000155578 uc064flv.1 AB049834 NM_015068 "CCDS55126|CCDS75636|CCDS75637" Q86TG7 "11318613|15716091|16093683" MGI:2157785 RGD:1595574 PEG10 609810 +HGNC:19969 PEG13 paternally expressed 13 non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 Long non-coding RNAs 788 2003-07-16 2015-09-10 359809 ENSG00000282164 OTTHUMG00000191428 AK307073 NR_144431 "24402520|24667089|24980697" MGI:2663476 +HGNC:8827 PELI1 pellino E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 2p14 02p14 "pellino (Drosophila) homolog 1|pellino homolog 1 (Drosophila)" Pellino E3 ubiquitin protein ligases 676 2000-09-01 2012-02-23 2016-10-05 57162 ENSG00000197329 OTTHUMG00000129511 uc002sct.5 NM_020651 CCDS1876 Q96FA3 "11306823|16951688" MGI:1914495 RGD:1311199 PELI1 614797 +HGNC:8828 PELI2 pellino E3 ubiquitin protein ligase family member 2 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 "pellino (Drosophila) homolog 2|pellino homolog 2 (Drosophila)" Pellino E3 ubiquitin protein ligases 676 2000-09-01 2012-02-23 2016-10-05 57161 ENSG00000139946 OTTHUMG00000152336 uc001xch.4 AF302502 XM_017021478 CCDS9726 Q9HAT8 "11306823|12860405" MGI:1891445 RGD:1565884 PELI2 614798 +HGNC:30010 PELI3 pellino E3 ubiquitin protein ligase family member 3 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 MGC35521 pellino homolog 3 (Drosophila) Pellino E3 ubiquitin protein ligases 676 2005-08-16 2012-02-23 2014-11-19 246330 ENSG00000174516 OTTHUMG00000167109 uc001oid.5 AL834395 NM_145065 "CCDS31615|CCDS41675|CCDS73328" Q8N2H9 "12874243|15917247" MGI:1924963 RGD:1305989 PELI3 609827 +HGNC:8829 PELO pelota homolog (Drosophila) protein-coding gene gene with protein product Approved 5q11.2 05q11.2 pelota (Drosophila) homolog 2000-05-31 2001-11-28 2014-11-19 53918 ENSG00000152684 OTTHUMG00000096973 uc003jos.5 NM_015946 CCDS3956 Q9BRX2 11060452 MGI:2145154 RGD:1359591 PELO 605757 +HGNC:30134 PELP1 proline, glutamate and leucine rich protein 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 MNAR proline, glutamic acid and leucine rich protein 1 5FMC ribosome biogenesis complex 1301 2005-11-22 2008-02-21 2016-04-25 27043 ENSG00000141456 OTTHUMG00000177831 uc002fyi.6 NM_014389 "CCDS58503|CCDS62038" Q8IZL8 "11481323|12682072" MGI:1922523 RGD:1306320 PELP1 609455 +HGNC:8830 PEMT phosphatidylethanolamine N-methyltransferase protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "PEMPT|PEMT2" 1999-12-15 2014-11-19 10400 ENSG00000133027 OTTHUMG00000059290 uc002grl.5 AF176806 NM_007169 "CCDS11186|CCDS11187|CCDS58520" Q9UBM1 "9989271|17881348" MGI:104535 RGD:3297 PEMT 602391 2.1.1.17 +HGNC:8831 PENK proenkephalin protein-coding gene gene with protein product Approved 8q12.1 08q12.1 preproenkephalin Endogenous ligands 542 2001-06-22 2016-01-15 5179 ENSG00000181195 OTTHUMG00000164409 uc003xta.4 NM_001135690 CCDS6168 P01210 6281660 MGI:104629 RGD:68946 PENK 131330 +HGNC:8838 PEPB peptidase B other unknown Approved 12q21 12q21 1986-01-01 2013-03-28 5182 MGI:97540 169900 3.4.11.4 +HGNC:8839 PEPC peptidase C other unknown Approved 1q25 01q25 1986-01-01 2013-03-28 5183 "5073691|2673983" 170000 "3.4.13.18|3.4.-.-" +HGNC:8840 PEPD peptidase D protein-coding gene gene with protein product Approved 19q13.11 19q13.11 prolidase 1986-01-01 2014-11-19 5184 ENSG00000124299 OTTHUMG00000180470 uc002nur.5 BC015027 NM_000285 "CCDS42544|CCDS54244|CCDS54245" P12955 "2925654|1972707" MGI:97542 RGD:1594571 PEPD 613230 124187 M24.007 objectId:2389 3.4.13.9 +HGNC:8841 PEPE peptidase E other unknown Approved 17 17 1986-01-01 2013-03-28 5185 170200 3.4.11.2 +HGNC:8845 PER1 period circadian clock 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 RIGUI PER "period (Drosophila) homolog 1|period homolog 1 (Drosophila)" 1997-10-21 2012-12-13 2015-09-04 5187 ENSG00000179094 OTTHUMG00000178317 uc002gkd.4 AB002107 NM_002616 CCDS11131 O15534 9323128 MGI:1098283 RGD:727863 PER1 602260 +HGNC:8846 PER2 period circadian clock 2 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 KIAA0347 "period (Drosophila) homolog 2|period homolog 2 (Drosophila)" 1999-06-11 2012-12-13 2014-11-19 8864 ENSG00000132326 OTTHUMG00000152884 uc002vyc.4 AB002345 NM_022817 CCDS2528 O15055 "9427249|17218255" MGI:1195265 RGD:61945 PER2 603426 167886 +HGNC:8847 PER3 period circadian clock 3 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 "period (Drosophila) homolog 3|period homolog 3 (Drosophila)" 1999-06-11 2012-12-13 2014-11-19 8863 ENSG00000049246 OTTHUMG00000001216 uc057bxs.1 BC026102 NM_016831 "CCDS89|CCDS72695|CCDS76097" P56645 9427249 MGI:1277134 RGD:621581 PER3 603427 456799 +HGNC:28208 PERM1 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "MGC13275|RP11-54O7.8|Perm1" PGC-1- and ERR-induced regulator in muscle 1 C1orf170 chromosome 1 open reading frame 170 2005-07-20 2014-01-15 2014-01-15 2016-09-26 84808 ENSG00000187642 OTTHUMG00000040757 AK123855 NR_027693 CCDS76083 Q5SV97 23836911 MGI:1921433 RGD:1304931 615921 +HGNC:17637 PERP PERP, TP53 apoptosis effector protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "PIGPC1|dJ496H19.1|KCP1|THW|KRTCAP1" keratinocyte associated protein 1 2003-11-19 2016-10-05 64065 ENSG00000112378 OTTHUMG00000015668 uc003qht.3 AF317550 NM_022121 CCDS5188 Q96FX8 11062687 MGI:1929938 RGD:1310294 PERP 609301 +HGNC:8848 PES1 pescadillo ribosomal biogenesis factor 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 PES "pescadillo (zebrafish) homolog 1, containing BRCT domain|pescadillo homolog 1, containing BRCT domain (zebrafish)" 1999-10-19 2012-02-23 2016-10-05 23481 ENSG00000100029 OTTHUMG00000151077 uc003aij.2 U78310 NM_014303 "CCDS13880|CCDS58802|CCDS74842" O00541 "8985183|10591208|17353269" MGI:1890613 RGD:1559814 PES1 605819 +HGNC:44058 PES1P1 pescadillo ribosomal biogenesis factor 1 pseudogene 1 pseudogene pseudogene Approved 4q28.3 04q28.3 2012-05-30 2014-11-19 345016 ENSG00000248191 OTTHUMG00000161470 NG_022080 PGOHUM00000246083 +HGNC:44059 PES1P2 pescadillo ribosomal biogenesis factor 1 pseudogene 2 pseudogene pseudogene Approved 9p23 09p23 2012-05-30 2014-11-19 347193 ENSG00000229268 OTTHUMG00000019565 NG_021640 PGOHUM00000236388 +HGNC:40038 PET100 PET100 homolog protein-coding gene gene with protein product Approved 19p13.2 19p13.2 C19orf79 "chromosome 19 open reading frame 79|PET100 homolog (S. cerevisiae)" 2011-07-06 2012-06-25 2015-07-08 2015-08-25 100131801 ENSG00000229833 uc010dvi.3 NM_001171155 CCDS54208 P0DJ07 "22356826|24462369" MGI:3615306 RGD:1585222 PET100 614770 396650 +HGNC:40045 PET117 PET117 homolog protein-coding gene gene with protein product Approved 20p11.23 20p11.23 CSRP2BP PET117 homolog (S. cerevisiae) 2012-02-23 2015-07-08 2016-08-10 100303755 ENSG00000232838 OTTHUMG00000186019 uc021wba.2 NM_001164811 CCDS54450 Q6UWS5 MGI:5295678 PET117 614771 +HGNC:8850 PEX1 peroxisomal biogenesis factor 1 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 "ZWS1|ZWS" "peroxisome biogenesis factor 1|Zellweger syndrome 1|Zellweger syndrome" "AAA ATPases|Peroxins" "413|957" 1998-01-08 2008-08-26 2014-11-19 5189 ENSG00000127980 OTTHUMG00000023926 uc003uly.4 AF026086 NM_000466 "CCDS5627|CCDS64710" O43933 9398848 MGI:1918632 RGD:1559939 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX1 PEX1 602136 124189 +HGNC:9717 PEX2 peroxisomal biogenesis factor 2 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 "PMP35|PAF-1|RNF72|ZWS3" "Zellweger syndrome|peroxin 2" PXMP3 "peroxisomal membrane protein 3 (35kD, Zellweger syndrome)|peroxisomal membrane protein 3, 35kDa" "Ring finger proteins|Peroxins" "58|957" 1992-03-03 2010-01-25 2010-01-25 2014-11-19 5828 ENSG00000164751 OTTHUMG00000164530 uc003yax.4 M86852 NM_000318 CCDS6221 P28328 "1546315|8858157" MGI:107486 RGD:61814 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX2 PEX2 170993 118174 +HGNC:8858 PEX3 peroxisomal biogenesis factor 3 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 Peroxins 957 1998-10-21 2014-11-19 8504 ENSG00000034693 OTTHUMG00000015730 uc003qjl.4 AJ001625 NM_003630 CCDS5199 P56589 9657383 MGI:1929646 RGD:621636 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX3 PEX3 603164 124209 +HGNC:9719 PEX5 peroxisomal biogenesis factor 5 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 PTS1R PXR1 peroxisome receptor 1 "Tetratricopeptide repeat domain containing|Peroxins" "769|957" 1994-12-13 2004-03-19 2004-03-17 2015-08-25 5830 ENSG00000139197 OTTHUMG00000168175 uc009zfu.3 U19721 NM_000319 "CCDS8576|CCDS44822|CCDS44823|CCDS44824|CCDS73433" P50542 MGI:1098808 RGD:1307612 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX5 PEX5 600414 124211 +HGNC:30024 PEX5L peroxisomal biogenesis factor 5 like protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "PEX5R|PXR2|TRIP8b" HCN channel auxiliary subunit Tetratricopeptide repeat domain containing 769 2004-07-26 2016-06-29 2016-10-05 51555 ENSG00000114757 OTTHUMG00000157363 uc003fki.3 AJ245503 NM_016559 "CCDS3236|CCDS58861|CCDS58862|CCDS58863|CCDS58864|CCDS58865|CCDS58866|CCDS58867" Q8IYB4 "11463335|19555650" MGI:1916672 RGD:708407 PEX5L 611058 +HGNC:41251 PEX5L-AS1 PEX5L antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q26.33 03q26.33 PEX5L antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2015-08-07 100874040 ENSG00000243799 OTTHUMG00000157362 uc062qgp.1 +HGNC:41252 PEX5L-AS2 PEX5L antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q26.33 03q26.33 PEX5L antisense RNA 2 (non-protein coding) 2011-07-27 2012-08-15 2015-08-07 101928790 ENSG00000244302 OTTHUMG00000157364 uc032slf.2 NR_110059 +HGNC:8859 PEX6 peroxisomal biogenesis factor 6 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "PXAAA1|PAF-2" "AAA ATPases|Peroxins" "413|957" 1997-05-22 2016-10-05 5190 ENSG00000124587 OTTHUMG00000014713 uc003otf.4 U56602 NM_000287 CCDS4877 Q13608 8670792 MGI:2385054 RGD:621637 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX6 PEX6 601498 124215 +HGNC:8860 PEX7 peroxisomal biogenesis factor 7 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "PTS2R|RD" Refsum disease "WD repeat domain containing|Peroxins" "362|957" 1997-05-22 2016-10-05 5191 ENSG00000112357 OTTHUMG00000015650 uc003qhd.4 AF180814 NM_000288 CCDS5180 O00628 "9090381|10673331" MGI:1321392 RGD:1308483 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX7 PEX7 601757 124219 +HGNC:8851 PEX10 peroxisomal biogenesis factor 10 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 RNF69 peroxisome biogenesis factor 10 "Ring finger proteins|Peroxins" "58|957" 1998-08-05 2008-08-26 2015-08-25 5192 ENSG00000157911 OTTHUMG00000001637 uc001ajh.4 AF060502 NM_153818 "CCDS41|CCDS44045" O60683 9683594 MGI:2684988 RGD:1591776 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX10 PEX10 602859 124191 +HGNC:8852 PEX11A peroxisomal biogenesis factor 11 alpha protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "PEX11-ALPHA|MGC119947|MGC138534" peroxisomal biogenesis factor 11A Peroxins 957 1998-11-11 2008-08-26 2015-03-11 8800 ENSG00000166821 OTTHUMG00000149809 uc002boi.5 AF093668 NM_003847 "CCDS10354|CCDS61751" O75192 9792670 MGI:1338788 RGD:619842 PEX11A 603866 +HGNC:8853 PEX11B peroxisomal biogenesis factor 11 beta protein-coding gene gene with protein product Approved 1q21.1 01q21.1 peroxisomal biogenesis factor 11B Peroxins 957 1998-11-11 2008-08-26 2015-08-25 8799 ENSG00000131779 OTTHUMG00000013756 uc001eny.3 AF093670 NM_003846 "CCDS72870|CCDS72871" O96011 9792670 MGI:1338882 RGD:1310353 PEX11B 603867 317370 +HGNC:20208 PEX11G peroxisomal biogenesis factor 11 gamma protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Peroxins 957 2003-07-14 2014-11-19 92960 ENSG00000104883 OTTHUMG00000182044 uc002mgk.3 BC008780 NM_080662 "CCDS12178|CCDS77227" Q96HA9 12417726 MGI:1920905 RGD:1307070 PEX11G 607583 +HGNC:8854 PEX12 peroxisomal biogenesis factor 12 protein-coding gene gene with protein product Approved 17q12 17q12 Peroxins 957 1997-05-22 2016-10-05 5193 ENSG00000108733 OTTHUMG00000132951 uc060ech.1 U91521 NM_000286 CCDS11296 O00623 9090384 MGI:2144177 RGD:620757 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX12 PEX12 601758 124194 +HGNC:39678 PEX12P1 peroxisomal biogenesis factor 12 pseudogene 1 pseudogene pseudogene Approved 13q31.3 13q31.3 2011-03-22 2011-03-22 121727 ENSG00000215418 OTTHUMG00000017181 NG_011336 PGOHUM00000248660 +HGNC:8855 PEX13 peroxisomal biogenesis factor 13 protein-coding gene gene with protein product Approved 2p15 02p15 peroxisome biogenesis factor 13 Peroxins 957 1997-06-24 2008-08-26 2016-10-05 5194 ENSG00000162928 OTTHUMG00000129422 uc002sau.5 U71374 NM_002618 CCDS1866 Q92968 9878256 MGI:1919379 RGD:1310682 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX13 PEX13 601789 124196 +HGNC:8856 PEX14 peroxisomal biogenesis factor 14 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 Peroxins 957 1998-08-21 2014-11-18 5195 ENSG00000142655 OTTHUMG00000001908 uc001arn.5 AF045186 XM_011541577 CCDS30582 O75381 9653144 MGI:1927868 RGD:68336 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX14 PEX14 601791 124198 +HGNC:8857 PEX16 peroxisomal biogenesis factor 16 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 Peroxins 957 1999-04-07 2015-03-11 9409 ENSG00000121680 OTTHUMG00000167005 uc001nbu.4 AF118240 NM_057174 "CCDS7917|CCDS31472" Q9Y5Y5 9922452 MGI:1338829 RGD:1311372 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX16 PEX16 603360 124200 +HGNC:9713 PEX19 peroxisomal biogenesis factor 19 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "HK33|D1S2223E|PMP1|PMPI|PXMP1" housekeeping gene, 33kD PXF peroxisomal farnesylated protein Peroxins 957 1997-06-12 2004-03-19 2004-03-17 2016-10-05 5824 ENSG00000162735 OTTHUMG00000033112 uc001fvs.3 Y09048 NM_002857 CCDS1201 P40855 "9339377|10051604" MGI:1334458 RGD:1306913 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX19 PEX19 600279 124202 +HGNC:22965 PEX26 peroxisomal biogenesis factor 26 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 FLJ20695 peroxisome biogenesis factor 26 Peroxins 957 2003-08-05 2008-08-26 2015-08-25 55670 ENSG00000215193 OTTHUMG00000149970 uc002znp.5 AB089678 NM_017929 "CCDS13750|CCDS56221" Q7Z412 "12717447|12851857" MGI:1921293 RGD:1584998 dbPEX, PEX Gene Database|http://www.dbpex.org/home.php?select_db=PEX26 PEX26 608666 124206 +HGNC:8861 PF4 platelet factor 4 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "SCYB4|CXCL4" chemokine (C-X-C motif) ligand 4 platelet factor 4 2001-06-22 2008-08-29 2016-10-05 5196 ENSG00000163737 OTTHUMG00000130009 uc003hhi.4 M25897 XM_005265696 CCDS3562 P02776 3622011 MGI:1888711 RGD:3305 PF4 173460 +HGNC:8862 PF4V1 platelet factor 4 variant 1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "SCYB4V1|CXCL4V1|CXCL4L1" 1990-09-10 2016-10-05 5197 ENSG00000109272 OTTHUMG00000130177 uc003hhg.2 M26167 NM_002620 CCDS3561 P10720 2725510 MGI:1888711 PF4V1 173461 +HGNC:8863 PFAS phosphoribosylformylglycinamidine synthase protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "PURL|FGARAT|KIAA0361" FGAR amidotransferase 1998-01-16 2008-07-31 2015-08-25 5198 ENSG00000178921 OTTHUMG00000108188 uc002gkr.4 AB002359 XM_017024760 CCDS11136 O15067 8110788 MGI:2684864 RGD:1304926 PFAS 602133 C56.972 6.3.5.3 +HGNC:8866 PFDN1 prefoldin subunit 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 PFD1 prefoldin 1 Prefoldin subunits 956 1998-08-06 2006-02-24 2016-10-05 5201 ENSG00000113068 OTTHUMG00000129249 uc003lff.2 Y17392 NM_002622 CCDS4222 O60925 9630229 MGI:1914449 RGD:1305603 PFDN1 604897 +HGNC:8867 PFDN2 prefoldin subunit 2 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 prefoldin 2 Prefoldin subunits 956 1998-08-06 2006-02-24 2014-11-19 5202 ENSG00000143256 OTTHUMG00000031481 uc001fxu.4 AF165883 NM_012394 CCDS1217 Q9UHV9 10051400 MGI:1276111 RGD:1591406 PFDN2 613466 +HGNC:8868 PFDN4 prefoldin subunit 4 protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "PFD4|C-1|C1" prefoldin 4 Prefoldin subunits 956 1998-08-06 2006-02-24 2014-11-19 5203 ENSG00000101132 OTTHUMG00000032775 uc002xwx.4 U41816 NM_002623 CCDS13445 Q9NQP4 "9630229|8744932" MGI:1923512 RGD:2324021 PFDN4 604898 +HGNC:8869 PFDN5 prefoldin subunit 5 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "PFD5|MM-1" prefoldin 5 Prefoldin subunits 956 1998-08-06 2006-02-24 2015-08-25 5204 ENSG00000123349 OTTHUMG00000169675 uc001scl.5 D89667 NM_002624 "CCDS8853|CCDS8854" Q99471 "9630229|9792694" MGI:1928753 RGD:1311436 PFDN5 604899 +HGNC:4926 PFDN6 prefoldin subunit 6 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "KE-2|H2-KE2|PFD6" HKE2 "HLA class II region expressed gene KE2|prefoldin 6" Prefoldin subunits 956 2000-06-26 2006-02-24 2006-02-24 2016-10-05 10471 ENSG00000204220 OTTHUMG00000031247 uc010jup.3 BC039033 NM_014260 CCDS4773 O15212 "9545376|9630229" MGI:95908 RGD:1303006 PFDN6 605660 +HGNC:8872 PFKFB1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 PFRX 6-phosphofructo-2-kinases/fructose-2,6-biphosphatases 1077 1990-09-10 2015-09-04 5207 ENSG00000158571 OTTHUMG00000021643 uc004dty.3 XM_017029576 "CCDS14364|CCDS65273" P16118 9119406 MGI:107816 RGD:3307 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PFKFB1 PFKFB1 311790 "2.7.1.105|3.1.3.46" +HGNC:8873 PFKFB2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 6-phosphofructo-2-kinases/fructose-2,6-biphosphatases 1077 1991-05-09 2016-10-05 5208 ENSG00000123836 OTTHUMG00000036033 uc001hfg.4 XM_005273162 "CCDS31003|CCDS31004" O60825 MGI:107815 RGD:3309 PFKFB2 171835 "2.7.1.105|3.1.3.46" +HGNC:8874 PFKFB3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 6-phosphofructo-2-kinases/fructose-2,6-biphosphatases 1077 1997-01-29 2015-09-04 5209 ENSG00000170525 OTTHUMG00000017621 uc057rmz.1 NM_004566 "CCDS7078|CCDS44353|CCDS60479|CCDS81439" Q16875 "9146922|10072580|22275052" MGI:2181202 RGD:619776 PFKFB3 605319 "2.7.1.105|3.1.3.46" +HGNC:8875 PFKFB4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 6-phosphofructo-2-kinases/fructose-2,6-biphosphatases 1077 1998-06-04 2016-10-05 5210 ENSG00000114268 OTTHUMG00000133528 uc003ctv.4 BC010269 NM_004567 "CCDS2771|CCDS82769|CCDS82770" Q16877 "8830046|10095107|25115398" MGI:2687284 RGD:3310 PFKFB4 605320 "2.7.1.105|3.1.3.46" +HGNC:8876 PFKL phosphofructokinase, liver type protein-coding gene gene with protein product Approved 21q22.3 21q22.3 1986-01-01 2016-02-10 2016-02-10 5211 ENSG00000141959 OTTHUMG00000086910 uc002zel.4 XM_017028368 CCDS33582 P17858 MGI:97547 RGD:3311 PFKL 171860 2.7.1.11 +HGNC:8877 PFKM phosphofructokinase, muscle protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "PFK-1|PPP1R122" protein phosphatase 1, regulatory subunit 122 PFKX phosphofructokinase, polypeptide X Protein phosphatase 1 regulatory subunits 694 1986-01-01 2014-11-19 5213 ENSG00000152556 OTTHUMG00000169898 uc001rrc.4 M26066 NM_000289 "CCDS8760|CCDS53786" P08237 MGI:97548 RGD:68419 PFKM 610681 124223 2.7.1.11 +HGNC:8878 PFKP phosphofructokinase, platelet protein-coding gene gene with protein product Approved 10p15.2 10p15.2 "PFK-C|PFKF" Phosphofructokinase, platelet type 1986-01-01 2016-10-05 5214 ENSG00000067057 OTTHUMG00000017556 uc001igp.4 AK092597 NM_002627 "CCDS7059|CCDS55698" Q01813 MGI:1891833 RGD:61893 PFKP 171840 2.7.1.11 +HGNC:20094 PFM3 parietal foramina 3 phenotype phenotype only Approved 4q21-q23 04q21-q23 2007-07-31 2011-02-10 619475 12905082 609566 +HGNC:8881 PFN1 profilin 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 1988-08-15 2015-09-04 5216 ENSG00000108518 OTTHUMG00000099396 uc002gaa.5 BC057828 NM_005022 CCDS11061 P07737 "3356709|1968707" MGI:97549 RGD:621825 PFN1 176610 310425 +HGNC:42989 PFN1P1 profilin 1 pseudogene 1 pseudogene pseudogene Approved 1q24.3 01q24.3 2011-09-16 2015-03-05 730138 ENSG00000233328 OTTHUMG00000034791 NG_005764 PGOHUM00000295953 +HGNC:24298 PFN1P2 profilin 1 pseudogene 2 pseudogene pseudogene Approved 1p11.2 01p11.2 COAS3 C1orf152 chromosome 1 open reading frame 152 2005-07-14 2011-09-16 2011-09-16 2015-03-05 767846 ENSG00000270392 OTTHUMG00000185012 AF345651 NR_003242 11948409 608609 PGOHUM00000295821 +HGNC:42987 PFN1P3 profilin 1 pseudogene 3 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-09-16 2016-10-05 200025 ENSG00000234367 OTTHUMG00000043046 NG_006513 PGOHUM00000244975 +HGNC:42992 PFN1P4 profilin 1 pseudogene 4 pseudogene pseudogene Approved 1q21.2 01q21.2 PFN1P5 profilin 1 pseudogene 5 2012-02-29 2015-03-05 767851 ENSG00000225080 OTTHUMG00000043429 NG_005766 PGOHUM00000244970 +HGNC:42988 PFN1P6 profilin 1 pseudogene 6 pseudogene pseudogene Approved 1q21.1 01q21.1 PFN1P7 profilin 1 pseudogene 7 2011-09-16 2015-02-11 645126 ENSG00000227212 OTTHUMG00000013834 NG_005762 +HGNC:42986 PFN1P8 profilin 1 pseudogene 8 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-09-16 2011-09-16 100873744 ENSG00000244371 OTTHUMG00000158076 NG_032539 PGOHUM00000244208 +HGNC:42991 PFN1P9 profilin 1 pseudogene 9 pseudogene pseudogene Approved 1p12 01p12 2012-02-24 2015-03-05 767850 ENSG00000227205 OTTHUMG00000012179 NG_005765 PGOHUM00000296483 +HGNC:42985 PFN1P10 profilin 1 pseudogene 10 pseudogene pseudogene Approved 1p36.12 01p36.12 2011-09-16 2011-09-16 2014-02-12 767853 ENSG00000176378 OTTHUMG00000002948 NG_005768 PGOHUM00000243929 +HGNC:42994 PFN1P11 profilin 1 pseudogene 11 pseudogene pseudogene Approved 10q24.32 10q24.32 2011-09-16 2011-09-16 100873784 ENSG00000213061 OTTHUMG00000018971 NG_032540 PGOHUM00000238616 +HGNC:42995 PFN1P12 profilin 1 pseudogene 12 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-09-16 2016-10-05 647569 ENSG00000226028 OTTHUMG00000041569 NG_005763 PGOHUM00000296513 +HGNC:8882 PFN2 profilin 2 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 1988-08-15 2015-09-04 5217 ENSG00000070087 OTTHUMG00000159683 uc003ext.3 L10678 NM_002628 "CCDS3148|CCDS46934" P35080 "8975700|8365484" MGI:97550 RGD:621826 PFN2 176590 +HGNC:18627 PFN3 profilin 3 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 2005-06-30 2016-10-05 345456 ENSG00000196570 OTTHUMG00000163408 uc003mgl.2 AC090063 NM_001029886 CCDS34301 P60673 11867228 MGI:2178800 RGD:1587838 PFN3 612812 +HGNC:31103 PFN4 profilin family member 4 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 profilin family, member 4 2004-02-13 2015-11-18 2016-10-05 375189 ENSG00000176732 OTTHUMG00000090816 uc002rfa.2 BC029523 NM_199346 CCDS1709 Q8NHR9 MGI:1920121 RGD:1359707 PFN4 +HGNC:8885 PGA3 pepsinogen 3, group I (pepsinogen A) protein-coding gene gene with protein product Approved 11q12.2 11q12.2 1986-01-01 2016-10-05 643834 ENSG00000229859 OTTHUMG00000168071 uc001nqx.4 AL832946 NM_001079807 CCDS31574 P0DJD8 6300126 MGI:1915935 PGA3 169710 A01.001 3.4.23.1 +HGNC:8886 PGA4 pepsinogen 4, group I (pepsinogen A) protein-coding gene gene with protein product Approved 11q13 11q13 2001-06-22 2015-09-08 643847 ENSG00000229183 OTTHUMG00000168073 uc001nqy.4 AP000437 NM_001079808 CCDS31575 P0DJD7 6300126 MGI:1915935 PGA4 169720 A01.070 3.4.23.1 +HGNC:8887 PGA5 pepsinogen 5, group I (pepsinogen A) protein-coding gene gene with protein product Approved 11q12.2 11q12.2 2001-06-22 2016-10-05 5222 ENSG00000256713 OTTHUMG00000168075 uc001nqz.4 BC029055 NM_014224 CCDS8001 P0DJD9 MGI:1915935 RGD:621573 PGA5 169730 A01.071 objectId:2390 3.4.23.1 +HGNC:8884 PGA@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-08-09 +HGNC:8888 PGAM1 phosphoglycerate mutase 1 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 PGAM-B Phosphoglycerate mutase A, nonmuscle form PGAMA phosphoglycerate mutase 1 (brain) Bisphosphoglycerate phosphatases 1082 2001-06-22 2015-11-26 2016-10-05 5223 ENSG00000171314 OTTHUMG00000018846 uc001knh.4 BC010038 NM_002629 CCDS7458 P18669 2846553 MGI:97552 RGD:3312 PGAM1 172250 "5.4.2.1|3.1.3.13" +HGNC:42448 PGAM1P1 phosphoglycerate mutase 1 pseudogene 1 pseudogene pseudogene Approved 5q11.2 05q11.2 2011-07-28 2014-11-19 100130514 ENSG00000248271 OTTHUMG00000162197 NG_021883 PGOHUM00000235598 +HGNC:42449 PGAM1P2 phosphoglycerate mutase 1 pseudogene 2 pseudogene pseudogene Approved 9p13.3 09p13.3 2011-07-28 2014-11-19 392310 ENSG00000225639 OTTHUMG00000019889 NG_021612 PGOHUM00000236026 +HGNC:42450 PGAM1P3 phosphoglycerate mutase 1 pseudogene 3 pseudogene pseudogene Approved 3p22.1 03p22.1 2011-07-28 2014-11-19 100873887 ENSG00000230274 OTTHUMG00000156073 NG_032517 PGOHUM00000237594 +HGNC:42451 PGAM1P4 phosphoglycerate mutase 1 pseudogene 4 pseudogene pseudogene Approved 3p25.3 03p25.3 2011-07-28 2014-11-18 391508 ENSG00000214041 OTTHUMG00000155029 NG_022236 PGOHUM00000237928 +HGNC:42452 PGAM1P5 phosphoglycerate mutase 1 pseudogene 5 pseudogene pseudogene Approved 12q22 12q22 2011-07-28 2014-11-19 100132594 ENSG00000257150 OTTHUMG00000170282 NR_077225 PGOHUM00000239900 +HGNC:42453 PGAM1P6 phosphoglycerate mutase 1 pseudogene 6 pseudogene pseudogene Approved 2p23.3 02p23.3 2011-07-28 2014-11-19 100420567 ENSG00000224464 OTTHUMG00000151904 NG_023552 PGOHUM00000239990 +HGNC:42454 PGAM1P7 phosphoglycerate mutase 1 pseudogene 7 pseudogene pseudogene Approved Xp11.3 Xp11.3 2011-07-28 2016-10-05 100420650 ENSG00000213997 OTTHUMG00000039871 NG_012622 PGOHUM00000241266 +HGNC:42455 PGAM1P8 phosphoglycerate mutase 1 pseudogene 8 pseudogene pseudogene Approved 11q13.1 11q13.1 2011-07-28 2014-11-19 440043 ENSG00000249251 OTTHUMG00000160126 NG_023196 PGOHUM00000242329 +HGNC:42456 PGAM1P9 phosphoglycerate mutase 1 pseudogene 9 pseudogene pseudogene Approved 11q14.3 11q14.3 2011-07-28 2014-11-19 100420681 ENSG00000249255 OTTHUMG00000160131 NG_024403 PGOHUM00000242425 +HGNC:42457 PGAM1P10 phosphoglycerate mutase 1 pseudogene 10 pseudogene pseudogene Approved 6q13 06q13 2011-07-28 2014-11-19 100420633 ENSG00000220515 OTTHUMG00000015017 NG_025955 PGOHUM00000243672 +HGNC:42464 PGAM1P11 phosphoglycerate mutase 1 pseudogene 11 pseudogene pseudogene Approved 1p36.22 01p36.22 2011-07-28 2014-11-19 100420660 ENSG00000233623 OTTHUMG00000001802 NG_027065 PGOHUM00000244597 +HGNC:42459 PGAM1P12 phosphoglycerate mutase 1 pseudogene 12 pseudogene pseudogene Approved 15q26.2 15q26.2 2011-07-28 2014-11-19 390643 ENSG00000250825 OTTHUMG00000160134 NG_022119 PGOHUM00000246936 +HGNC:42461 PGAM1P13 phosphoglycerate mutase 1 pseudogene 13 pseudogene pseudogene Approved 8q23.1 08q23.1 2011-07-28 2014-11-19 100129815 ENSG00000248838 OTTHUMG00000160125 NG_022429 PGOHUM00000249772 +HGNC:8889 PGAM2 phosphoglycerate mutase 2 protein-coding gene gene with protein product Approved 7p13 07p13 PGAM-M phosphoglycerate mutase 2 (muscle) Bisphosphoglycerate phosphatases 1082 1989-06-30 2015-11-26 2016-10-05 5224 ENSG00000164708 OTTHUMG00000155355 uc003tjs.3 NM_000290 CCDS34624 P15259 MGI:1933118 RGD:3313 PGAM2 612931 167879 "5.4.2.1|3.1.3.13|5.4.2.4" +HGNC:16557 PGAM3P phosphoglycerate mutase 3, pseudogene pseudogene pseudogene Approved 20p12.2 20p12.2 dJ1128N12.1 2001-09-17 2011-07-28 170535 ENSG00000237256 OTTHUMG00000031885 AL109837 NG_001047 PGOHUM00000247592 +HGNC:21731 PGAM4 phosphoglycerate mutase family member 4 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "dJ1000K24.1|PGAM3|PGAM-B|PGAM1" phosphoglycerate mutase family 4 Bisphosphoglycerate phosphatases 1082 2005-04-29 2006-02-09 2015-09-04 441531 ENSG00000226784 OTTHUMG00000057865 uc004ecy.2 AF465731 NM_001029891 CCDS35338 Q8N0Y7 "11961099|9370262" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PGAM4 PGAM4 300567 +HGNC:42465 PGAM4P1 phosphoglycerate mutase family member 4 pseudogene 1 pseudogene pseudogene Approved Xp11.22 Xp11.22 2011-07-28 2014-11-19 100421178 ENSG00000215197 OTTHUMG00000021630 NG_026840 PGOHUM00000241790 +HGNC:42466 PGAM4P2 phosphoglycerate mutase family member 4 pseudogene 2 pseudogene pseudogene Approved 4q26 04q26 2011-07-28 2014-11-18 100131611 ENSG00000248488 OTTHUMG00000160123 NG_022028 PGOHUM00000245664 +HGNC:28763 PGAM5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "MGC5352|BXLBv68" "phosphoglycerate mutase family member 5|PGAM family member 5, serine/threonine protein phosphatase, mitochondrial" Serine/threonine phosphatases 814 2006-02-09 2016-03-10 2016-03-10 192111 ENSG00000247077 OTTHUMG00000168021 uc009zyv.4 BC008196 NM_138575 "CCDS9280|CCDS53845" Q96HS1 "11283018|19590015" MGI:1919792 RGD:1312028 PGAM5 614939 +HGNC:42467 PGAM5P1 PGAM family member 5, mitochondrial serine/threonine protein phosphatase pseudogene 1 pseudogene pseudogene Approved 5q21.3 05q21.3 phosphoglycerate mutase family member 5 pseudogene 1 2011-07-28 2016-03-10 2016-03-10 100421133 ENSG00000253224 OTTHUMG00000163575 NG_024616 PGOHUM00000235351 +HGNC:25712 PGAP1 post-GPI attachment to proteins 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "FLJ12377|Bst1|SPG67" GPI inositol-deacylase 2008-02-26 2014-11-19 80055 ENSG00000197121 OTTHUMG00000132743 uc002utw.4 NM_024989 CCDS2318 Q75T13 "14734546|17711852|24482476" MGI:2443342 RGD:1303213 PGAP1 611655 403377 +HGNC:17893 PGAP2 post-GPI attachment to proteins 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "FRAG1|CWH43-N" "FGF receptor activating protein 1|cell wall biogenesis 43 N-terminal homolog (S. cerevisiae)" MRT21 mental retardation, non-syndromic, autosomal recessive, 21 2009-06-18 2014-11-19 27315 ENSG00000148985 OTTHUMG00000012238 uc057ydq.1 AF159615 XM_011519990 "CCDS7747|CCDS44523|CCDS58112|CCDS58113|CCDS73244|CCDS73245" Q9UHJ9 "10585768|16407401|23561846" MGI:2385286 RGD:619744 PGAP2 615187 331952 +HGNC:23719 PGAP3 post-GPI attachment to proteins 3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "MGC9753|CAB2|PP1498|PER1" post-GPI attachment to proteins 3 PERLD1 per1-like domain containing 1 2004-04-30 2009-06-02 2009-06-02 2014-11-19 93210 ENSG00000161395 OTTHUMG00000179110 uc002hsj.4 AB088396 NM_033419 "CCDS32641|CCDS77013|CCDS77014|CCDS77015" Q96FM1 "15010812|17021251|17314402" MGI:2444461 RGD:1592386 PGAP3 611801 395056 +HGNC:19398 PGBD1 piggyBac transposable element derived 1 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "HUCEP-4|dJ874C20.4|SCAND4" 2002-10-23 2015-09-04 84547 ENSG00000137338 OTTHUMG00000014520 uc003nkz.4 D88259 XM_017011361 CCDS4648 Q96JS3 MGI:2441675 RGD:9394854 PGBD1 1149 +HGNC:19399 PGBD2 piggyBac transposable element derived 2 protein-coding gene gene with protein product Approved 1q 01q 2002-10-23 2015-09-04 267002 ENSG00000185220 OTTHUMG00000040424 uc001ifh.4 AF229602 XM_011544159 "CCDS31128|CCDS31129" Q6P3X8 RGD:7548161 PGBD2 +HGNC:19400 PGBD3 piggyBac transposable element derived 3 protein-coding gene gene with protein product Approved 10q11 10q11 FLJ90201 2002-10-23 2014-11-19 267004 ENSG00000243251 OTTHUMG00000018193 uc057tet.1 AK074682 NM_170753 CCDS7230 Q8N328 PGBD3 +HGNC:19402 PGBD3P1 piggyBac transposable element derived 3 pseudogene 1 pseudogene pseudogene Approved 12q13.12 12q13.12 2002-10-23 2014-11-19 267005 NG_002400 +HGNC:19397 PGBD3P2 piggyBac transposable element derived 3 pseudogene 2 pseudogene pseudogene Approved 5p13.3 05p13.3 2002-10-23 2014-11-19 267006 NG_002401 +HGNC:19396 PGBD3P3 piggyBac transposable element derived 3 pseudogene 3 pseudogene pseudogene Approved 12q24.2 12q24.2 2002-10-23 2009-09-22 267007 NG_002402 +HGNC:19379 PGBD3P4 piggyBac transposable element derived 3 pseudogene 4 pseudogene pseudogene Approved 4p14 04p14 2002-10-23 2014-11-19 267008 NG_002403 +HGNC:19401 PGBD4 piggyBac transposable element derived 4 protein-coding gene gene with protein product Approved 15q14 15q14 "FLJ32638|FLJ37497" 2002-10-23 2016-10-05 161779 ENSG00000182405 OTTHUMG00000129370 uc001zho.4 AK057200 NM_152595 CCDS10033 Q96DM1 PGBD4 +HGNC:44066 PGBD4P1 piggyBac transposable element derived 4 pseudogene 1 pseudogene pseudogene Approved 7q34 07q34 2012-05-30 2014-11-19 107161154 ENSG00000244273 OTTHUMG00000158890 NG_001333 PGOHUM00000233613 +HGNC:44077 PGBD4P2 piggyBac transposable element derived 4 pseudogene 2 pseudogene pseudogene Approved 20q13.12 20q13.12 2012-05-30 2014-11-19 100421228 ENSG00000277708 OTTHUMG00000187975 NG_024979 PGOHUM00000247541 +HGNC:44068 PGBD4P3 piggyBac transposable element derived 4 pseudogene 3 pseudogene pseudogene Approved 5q32 05q32 2012-05-30 2014-11-19 100421136 ENSG00000249834 OTTHUMG00000163432 NG_024731 PGOHUM00000235808 +HGNC:44076 PGBD4P4 piggyBac transposable element derived 4 pseudogene 4 pseudogene pseudogene Approved 4q28.3 04q28.3 2012-05-30 2014-11-19 100421146 ENSG00000248877 OTTHUMG00000161057 NG_025253 PGOHUM00000246078 +HGNC:44070 PGBD4P5 piggyBac transposable element derived 4 pseudogene 5 pseudogene pseudogene Approved 2p11.2 02p11.2 2012-05-30 2014-11-19 100421123 ENSG00000225136 OTTHUMG00000151537 NG_023585 PGOHUM00000240143 +HGNC:44071 PGBD4P6 piggyBac transposable element derived 4 pseudogene 6 pseudogene pseudogene Approved Xq27.3 Xq27.3 2012-05-30 2014-11-19 100421180 ENSG00000226064 OTTHUMG00000022576 NG_026900 PGOHUM00000242055 +HGNC:44074 PGBD4P7 piggyBac transposable element derived 4 pseudogene 7 pseudogene pseudogene Approved 1p21.3 01p21.3 2012-05-30 2015-08-24 100421182 ENSG00000244433 OTTHUMG00000010703 NG_026961 PGOHUM00000295762 +HGNC:44075 PGBD4P8 piggyBac transposable element derived 4 pseudogene 8 pseudogene pseudogene Approved 1p32.1 01p32.1 2012-05-30 2012-05-30 100421185 ENSG00000229332 OTTHUMG00000008993 NG_027099 PGOHUM00000244736 +HGNC:19405 PGBD5 piggyBac transposable element derived 5 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "DKFZp761A0620|FLJ11413" 2002-10-23 2015-08-25 79605 ENSG00000177614 OTTHUMG00000037759 uc057qgx.1 AK021475 NM_024554 CCDS81430 Q8N414 MGI:2429955 RGD:1310825 PGBD5 616791 +HGNC:8890 PGC progastricsin protein-coding gene gene with protein product Approved 6p21.1 06p21.1 pepsinogen C progastricsin (pepsinogen C) 2001-06-22 2016-06-01 2016-06-01 5225 ENSG00000096088 OTTHUMG00000014683 uc003ora.3 NM_002630 "CCDS4859|CCDS55000" P20142 MGI:98909 RGD:3943 PGC 169740 A01.003 objectId:2391 3.4.23.3 +HGNC:39503 PGCP1 progastricsin pseudogene 1 pseudogene pseudogene Approved 1p13.2 01p13.2 progastricsin (pepsinogen C) pseudogene 1 2011-01-31 2016-06-27 2016-06-27 441897 ENSG00000227179 OTTHUMG00000011171 NR_029429 PGOHUM00000244143 +HGNC:8891 PGD phosphogluconate dehydrogenase protein-coding gene gene with protein product Approved 1p36.22 01p36.22 2001-06-22 2014-11-18 5226 ENSG00000142657 OTTHUMG00000001905 uc001arc.4 BC000368 NM_002631 CCDS113 P52209 MGI:97553 RGD:1583832 PGD 172200 1.1.1.43 +HGNC:8892 PGDP1 phosphogluconate dehydrogenase pseudogene 1 pseudogene pseudogene Approved 18q12.1 18q12.1 PGDL1 phosphogluconate dehydrogenase-like 1 1989-05-25 2010-10-21 2010-10-21 2014-11-19 342705 ENSG00000265273 OTTHUMG00000179618 NG_022489 PGOHUM00000235036 +HGNC:39144 PGDP2 phosphogluconate dehydrogenase pseudogene 2 pseudogene pseudogene Approved 12q21.2 12q21.2 2010-10-21 2010-10-21 100129649 NG_021727 PGOHUM00000239859 +HGNC:8893 PGF placental growth factor protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "PLGF|PlGF-2|PlGF|SHGC-10760|D12S1900|PIGF" placenta growth factor PGFL "placental growth factor-like|placental growth factor, vascular endothelial growth factor-related protein" VEGF family 1267 1994-01-14 2008-03-20 2016-05-20 5228 ENSG00000119630 OTTHUMG00000171496 uc001xqz.4 S72960 NM_002632 "CCDS9835|CCDS55932|CCDS73664" P49763 7681160 MGI:105095 RGD:619850 PGF 601121 +HGNC:26210 PGGHG protein-glucosylgalactosylhydroxylysine glucosidase protein-coding gene gene with protein product Approved 11p15.5 11p15.5 FLJ22635 ATHL1 ATH1, acid trehalase-like 1 (yeast) 2005-10-27 2016-06-14 2016-06-14 2016-06-14 80162 ENSG00000142102 OTTHUMG00000153218 uc010qvu.3 AK090428 NM_025092 CCDS31322 Q32M88 26682924 MGI:2444047 RGD:1306015 617032 3.2.1.107 +HGNC:8895 PGGT1B protein geranylgeranyltransferase type I subunit beta protein-coding gene gene with protein product Approved 5q22.3 05q22.3 "GGTI|BGGI" protein geranylgeranyltransferase type I, beta subunit 1997-07-25 2016-01-27 2016-10-05 5229 ENSG00000164219 OTTHUMG00000128893 uc003kqw.5 NM_005023 CCDS4116 P53609 8106351 MGI:1917514 RGD:621754 PGGT1B 602031 +HGNC:45024 PGGT1BP1 protein geranylgeranyltransferase type I subunit beta pseudogene 1 pseudogene pseudogene Approved 10q11.23 10q11.23 2013-01-08 2016-06-14 2016-06-14 653895 ENSG00000213667 OTTHUMG00000018233 NG_028750 PGOHUM00000238491 +HGNC:45112 PGGT1BP2 protein geranylgeranyltransferase type I subunit beta pseudogene 2 pseudogene pseudogene Approved 10q22.3 10q22.3 2013-02-15 2016-06-14 2016-06-14 100132402 ENSG00000214584 OTTHUMG00000018591 NG_022149 PGOHUM00000238555 +HGNC:8896 PGK1 phosphoglycerate kinase 1 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 1989-04-24 2016-10-05 5230 ENSG00000102144 OTTHUMG00000021888 uc004ecz.5 L00159 NM_000291 CCDS14438 P00558 "6188151|6099325" MGI:97555 RGD:619878 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PGK1 PGK1 311800 124227 2.7.2.3 +HGNC:8897 PGK1P1 phosphoglycerate kinase 1, pseudogene 1 pseudogene pseudogene Approved Xq12 Xq12 1989-04-24 2008-01-31 5231 X56251 NG_001170 1549504 +HGNC:8899 PGK1P2 phosphoglycerate kinase 1, pseudogene 2 pseudogene pseudogene Approved 19p13.2 19p13.2 1989-02-21 2002-04-19 2013-09-19 5233 ENSG00000213290 OTTHUMG00000156420 AC010422 NG_001528 "3016919|3502690" PGOHUM00000234519 +HGNC:8898 PGK2 phosphoglycerate kinase 2 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "PGKPS|PGK-2" 1991-08-18 2002-04-19 2015-09-04 5232 ENSG00000170950 OTTHUMG00000014824 uc003ozu.5 K03019 NM_138733 CCDS4930 P07205 "3839763|3453121" MGI:97563 RGD:1306627 PGK2 172270 +HGNC:8903 PGLS 6-phosphogluconolactonase protein-coding gene gene with protein product Approved 19p13.2 19p13.2 6PGL 2000-01-20 2015-08-25 25796 ENSG00000130313 OTTHUMG00000182879 uc002ngw.4 AJ243972 XM_011527897 CCDS12361 O95336 10518023 MGI:1913421 RGD:1307001 PGLS 604951 3.1.1.31 +HGNC:8904 PGLYRP1 peptidoglycan recognition protein 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "TAG7|PGRP|PGRP-S|PGRPS" "TNFSF3L|PGLYRP" peptidoglycan recognition protein 1999-01-15 2004-03-19 2004-03-17 2015-07-22 8993 ENSG00000008438 OTTHUMG00000182489 uc002pdx.4 AF076483 NM_005091 CCDS12680 O75594 "9707603|12669421" MGI:1345092 RGD:621429 PGLYRP1 604963 +HGNC:30013 PGLYRP2 peptidoglycan recognition protein 2 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "PGRP-L|PGLYRPL|TAGL-like|tagL|tagL-alpha|tagl-beta|PGRPL" "peptidoglycan recognition protein L precursor|peptidoglycan recognition protein-like|N-acetylmuramoyl-L-alanine amidase" 2004-03-17 2014-11-19 114770 ENSG00000161031 OTTHUMG00000150690 uc002nbf.5 AY358156 NM_052890 CCDS12330 Q96PD5 "11461926|12669421|14506276" MGI:1928099 RGD:1359183 PGLYRP2 608199 3.5.1.28 +HGNC:30014 PGLYRP3 peptidoglycan recognition protein 3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "PGRPIA|PGLYRPIalpha|PGRP-Ialpha" peptidoglycan recognition protein I alpha precursor 2004-03-17 2016-10-05 114771 ENSG00000159527 OTTHUMG00000014044 uc001fbn.1 AY035376 NM_052891 CCDS1035 Q96LB9 11461926 MGI:2685266 RGD:1593164 PGLYRP3 608197 +HGNC:30015 PGLYRP4 peptidoglycan recognition protein 4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "SBBI67|PGRPIB|PGLYRPIbeta|PGRP-Ibeta" peptidoglycan recognition protein I beta precursor 2004-03-17 2016-10-05 57115 ENSG00000163218 OTTHUMG00000037057 uc001fbo.4 AF242518 NM_020393 CCDS30871 Q96LB8 11461926 MGI:2686324 RGD:1308520 PGLYRP4 608198 +HGNC:8905 PGM1 phosphoglucomutase 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 2001-06-22 2016-10-05 5236 ENSG00000079739 OTTHUMG00000008968 uc001dbh.5 BC019920 NM_002633 "CCDS625|CCDS53323|CCDS53324" P36871 "4517931|1530890" MGI:97565 RGD:3316 PGM1 171900 124229 5.4.2.2 +HGNC:8906 PGM2 phosphoglucomutase 2 protein-coding gene gene with protein product Approved 4p14 04p14 FLJ10983 phosphopentomutase 2001-06-22 2014-11-19 55276 ENSG00000169299 OTTHUMG00000097813 uc011byb.2 BC010087 NM_018290 CCDS3443 Q96G03 9549096 MGI:97564 RGD:1306061 PGM2 172000 5.4.2.2 +HGNC:20898 PGM2L1 phosphoglucomutase 2 like 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "FLJ32029|BM32A" glucose-1,6-bisphosphate synthase 2004-01-20 2016-06-17 2016-10-05 283209 ENSG00000165434 OTTHUMG00000168132 uc001ovb.2 AB019210 NM_173582 CCDS8231 Q6PCE3 17804405 MGI:1918224 RGD:1583226 PGM2L1 611610 +HGNC:8907 PGM3 phosphoglucomutase 3 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "AGM1|DKFZP434B187|PAGM" acetylglucosamine phosphomutase 2001-06-22 2016-10-05 5238 ENSG00000013375 OTTHUMG00000015110 uc003pju.3 BC001258 NM_015599 "CCDS4997|CCDS56435|CCDS56436|CCDS75487" O95394 "12174217|10721701" MGI:97566 RGD:1305221 PGM3 172100 446811 5.4.2.3 +HGNC:8908 PGM5 phosphoglucomutase 5 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 PGMRP phosphoglucomutase-related protein 1995-08-15 2016-10-05 5239 ENSG00000154330 OTTHUMG00000019966 uc004agr.3 L40933 NM_021965 CCDS6622 Q15124 "8586438|8631316" MGI:1925668 RGD:1307969 PGM5 600981 +HGNC:44181 PGM5-AS1 PGM5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q21.11 09q21.11 FAM233A family with sequence similarity 233, member A PGM5 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-08-01 572558 ENSG00000224958 OTTHUMG00000019962 uc064tob.1 AY343894 NR_015423 +HGNC:28452 PGM5P1 phosphoglucomutase 5 pseudogene 1 pseudogene pseudogene Approved 9q12 not on reference assembly 09q12 not on reference assembly 2005-08-02 2015-02-04 653394 "12421752|15233989" PGOHUM00000263221 +HGNC:18965 PGM5P2 phosphoglucomutase 5 pseudogene 2 pseudogene pseudogene Approved 9p11.2 09p11.2 2005-08-02 2016-10-05 595135 ENSG00000277778 OTTHUMG00000188612 uc004aff.5 "BC007887|BC025351" NR_002836 "12421752|15233989" PGOHUM00000303823 +HGNC:49604 PGM5P3 phosphoglucomutase 5 pseudogene 3 pseudogene pseudogene Approved 9p24.3 09p24.3 2014-01-23 2015-02-03 101929157 PGOHUM00000235941 +HGNC:51194 PGM5P3-AS1 PGM5P3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p24.3 09p24.3 FAM233B family with sequence similarity 233, member B 2014-08-01 2014-08-01 101929127 ENSG00000277631 OTTHUMG00000019423 NR_121188 +HGNC:49605 PGM5P4 phosphoglucomutase 5 pseudogene 4 pseudogene pseudogene Approved 2q13 02q13 2014-01-23 2014-01-23 729468 ENSG00000225398 OTTHUMG00000047819 PGOHUM00000240872 +HGNC:51195 PGM5P4-AS1 PGM5P4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q14.1 02q14.1 FAM233C family with sequence similarity 233, member C 2014-08-01 2014-08-01 103344932 ENSG00000231943 OTTHUMG00000047830 NR_121185 +HGNC:8909 PGP phosphoglycolate phosphatase protein-coding gene gene with protein product Approved 16p13.3 16p13.3 2001-06-22 2015-08-13 283871 ENSG00000184207 OTTHUMG00000177047 uc002cpk.2 BC035985 NM_024118 CCDS42104 A6NDG6 MGI:1914328 RGD:1307773 PGP 172280 3.1.3.18 +HGNC:13568 PGPEP1 pyroglutamyl-peptidase I protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "PGP-I|Pcp|PGP|PGPI" pyroglutamyl aminopeptidase 2001-01-26 2015-08-25 54858 ENSG00000130517 OTTHUMG00000183358 uc002nis.2 AJ278828 NM_017712 "CCDS12375|CCDS74314|CCDS77264|CCDS82319" Q9NXJ5 MGI:1913772 RGD:1303133 PGPEP1 610694 C15.010 3.4.19.3 +HGNC:27080 PGPEP1L pyroglutamyl-peptidase I-like protein-coding gene gene with protein product Approved 15q26.3 15q26.3 2010-02-16 2010-02-16 145814 ENSG00000183571 OTTHUMG00000171896 uc002bum.4 NM_001102612.2 "CCDS53977|CCDS58400" A6NFU8 MGI:1925694 RGD:1561859 PGPEP1L +HGNC:8910 PGR progesterone receptor protein-coding gene gene with protein product Approved 11q22.1 11q22.1 "PR|NR3C3" Nuclear hormone receptors 71 2001-06-22 2016-10-05 5241 ENSG00000082175 OTTHUMG00000167531 uc001pgh.3 M15716 XM_006718858 "CCDS8310|CCDS59229" P06401 MGI:97567 RGD:3317 PGR 607311 objectId:627 +HGNC:16090 PGRMC1 progesterone receptor membrane component 1 protein-coding gene gene with protein product Approved Xq24 Xq24 HPR6.6 Membrane associated progesterone receptor family 1282 2001-07-25 2016-10-05 10857 ENSG00000101856 OTTHUMG00000022268 uc004erb.5 NM_006667 "CCDS14576|CCDS65313" O00264 9705155 MGI:1858305 RGD:70890 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PGRMC1 PGRMC1 300435 +HGNC:16089 PGRMC2 progesterone receptor membrane component 2 protein-coding gene gene with protein product Approved 4q28.2 04q28.2 "PMBP|DG6" Membrane associated progesterone receptor family 1282 2001-07-25 2016-10-05 10424 ENSG00000164040 OTTHUMG00000133342 uc062zmv.1 NM_006320 CCDS3739 O15173 9705155 MGI:1918054 RGD:1308804 PGRMC2 607735 +HGNC:30029 PGS1 phosphatidylglycerophosphate synthase 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 DKFZP762M186 2005-11-15 2014-11-19 9489 ENSG00000087157 OTTHUMG00000177514 uc002jvm.4 NM_024419 CCDS42391 Q32NB8 9880566 MGI:1921701 RGD:1305052 PGS1 614942 +HGNC:20990 PHACTR1 phosphatase and actin regulator 1 protein-coding gene gene with protein product Approved 6p24.1 06p24.1 "KIAA1733|dJ257A7.2" RPEL1 RPEL repeat containing 1 Phosphatase and actin regulators 679 2003-05-19 2004-05-21 2004-05-20 2016-10-05 221692 ENSG00000112137 OTTHUMG00000014270 uc010jpc.4 AB051520 XM_166420 CCDS75401 Q9C0D0 "11214970|15107502" MGI:2659021 RGD:1303187 PHACTR1 608723 +HGNC:20956 PHACTR2 phosphatase and actin regulator 2 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 KIAA0680 C6orf56 chromosome 6 open reading frame 56 Phosphatase and actin regulators 679 2003-04-24 2004-05-20 2004-05-20 2016-10-05 9749 ENSG00000112419 OTTHUMG00000015732 uc010khh.4 AB014580 NM_014721 "CCDS43512|CCDS47492|CCDS47493|CCDS47494" O75167 "9734811|15107502" MGI:2446138 RGD:1303141 PHACTR2 608724 +HGNC:40943 PHACTR2-AS1 PHACTR2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q24.2 06q24.2 2015-10-15 2015-10-15 285740 ENSG00000235740 OTTHUMG00000015731 NR_027114 +HGNC:49488 PHACTR2P1 phosphatase and actin regulator 2 pseudogene 1 pseudogene pseudogene Approved 10q26.11 10q26.11 2013-12-20 2013-12-20 100533676 ENSG00000270300 OTTHUMG00000184679 NG_028754 PGOHUM00000258506 +HGNC:15833 PHACTR3 phosphatase and actin regulator 3 protein-coding gene gene with protein product Approved 20q13.32-q13.33 20q13.32-q13.33 PPP1R123 protein phosphatase 1, regulatory subunit 123 C20orf101 chromosome 20 open reading frame 101 "Phosphatase and actin regulators|Protein phosphatase 1 regulatory subunits" "679|694" 2001-06-15 2004-05-20 2004-05-20 2016-10-11 116154 ENSG00000087495 OTTHUMG00000032869 uc002yau.5 AJ311122 NM_080672 "CCDS13480|CCDS13481|CCDS42895|CCDS56202" Q96KR7 15107502 MGI:1921439 RGD:1303029 PHACTR3 608725 +HGNC:25793 PHACTR4 phosphatase and actin regulator 4 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "FLJ13171|PPP1R124" protein phosphatase 1, regulatory subunit 124 "Phosphatase and actin regulators|Protein phosphatase 1 regulatory subunits" "679|694" 2004-05-20 2016-10-05 65979 ENSG00000204138 OTTHUMG00000003541 uc001bpy.5 AF130081 NM_023923 "CCDS41293|CCDS41294" Q8IZ21 "11483580|15107502" MGI:2140327 RGD:1592823 PHACTR4 608726 +HGNC:10241 PHAX phosphorylated adaptor for RNA export protein-coding gene gene with protein product Approved 5q23.2 05q23.2 FLJ13193 RNUXA RNA U, small nuclear RNA export adaptor (phosphorylation regulated) 2000-06-16 2008-10-01 2008-10-01 2014-11-18 51808 ENSG00000164902 OTTHUMG00000163273 uc003kua.3 AK023255 NM_032177 CCDS4138 Q9H814 10786834 MGI:1891839 RGD:708448 PHAX 604924 +HGNC:8912 PHB prohibitin protein-coding gene gene with protein product Approved 17q21.33 17q21.33 PHB1 1991-03-04 2016-10-05 5245 ENSG00000167085 OTTHUMG00000134271 uc032fme.2 NM_002634 "CCDS11548|CCDS62244" P35232 "10376528|8244394" MGI:97572 RGD:3322 PHB 176705 +HGNC:30306 PHB2 prohibitin 2 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "REA|BCAP37|Bap37|p22" 2005-02-24 2016-10-05 11331 ENSG00000215021 OTTHUMG00000168519 uc058kpb.1 AF126021 NM_007273 "CCDS53741|CCDS58207" Q99623 "11302691|9259555" MGI:102520 RGD:620203 PHB2 610704 +HGNC:45249 PHB2P1 prohibitin 2 pseudogene 1 pseudogene pseudogene Approved 10q25.1 10q25.1 2013-03-11 2013-03-11 645318 ENSG00000232728 OTTHUMG00000019025 NG_022190 PGOHUM00000238914 +HGNC:8913 PHBP1 prohibitin pseudogene 1 pseudogene pseudogene Approved 6q25.1 06q25.1 1993-11-04 2016-10-05 5246 ENSG00000213091 OTTHUMG00000015817 L14273 NG_001171 8244394 PGOHUM00000243820 +HGNC:8914 PHBP2 prohibitin pseudogene 2 pseudogene pseudogene Approved 11p11.2 11p11.2 1993-11-04 2015-03-05 100418837 ENSG00000254512 OTTHUMG00000166404 NG_024480 8244394 PGOHUM00000290886 +HGNC:8915 PHBP3 prohibitin pseudogene 3 pseudogene pseudogene Approved 1p32.1 01p32.1 1993-11-04 2014-11-19 391044 ENSG00000228121 OTTHUMG00000008378 NG_022781 8244394 PGOHUM00000244735 +HGNC:8916 PHBP4 prohibitin pseudogene 4 pseudogene pseudogene Approved 2q24.1 02q24.1 1993-11-04 2014-11-19 100418774 ENSG00000230251 OTTHUMG00000153847 NG_023743 8244394 PGOHUM00000240990 +HGNC:39284 PHBP5 prohibitin pseudogene 5 pseudogene pseudogene Approved 7q11.23 07q11.23 2010-11-26 2010-11-27 106478939 ENSG00000233523 OTTHUMG00000156703 NG_043647 PGOHUM00000232866 +HGNC:39285 PHBP6 prohibitin pseudogene 6 pseudogene pseudogene Approved 7q11.23 07q11.23 2010-11-26 2015-03-05 106478940 ENSG00000276592 OTTHUMG00000188296 NG_043655 PGOHUM00000302809 +HGNC:39286 PHBP7 prohibitin pseudogene 7 pseudogene pseudogene Approved 9q21.33 09q21.33 2010-11-26 2010-11-26 548599 ENSG00000213711 OTTHUMG00000020128 NG_005066 PGOHUM00000236671 +HGNC:39287 PHBP8 prohibitin pseudogene 8 pseudogene pseudogene Approved 3q13.33 03q13.33 2010-11-26 2010-11-26 100418804 ENSG00000240471 OTTHUMG00000159405 NG_025728 PGOHUM00000238141 +HGNC:39288 PHBP9 prohibitin pseudogene 9 pseudogene pseudogene Approved 10q24.31 10q24.31 2010-11-26 2010-11-26 100289414 ENSG00000230224 OTTHUMG00000018902 NG_028967 PGOHUM00000238905 +HGNC:39289 PHBP10 prohibitin pseudogene 10 pseudogene pseudogene Approved Xq22.3 Xq22.3 2010-11-26 2010-11-26 100418815 ENSG00000232665 OTTHUMG00000022127 NG_012566 PGOHUM00000241487 +HGNC:39290 PHBP11 prohibitin pseudogene 11 pseudogene pseudogene Approved 1q41 01q41 2010-11-26 2010-11-26 644214 ENSG00000227621 OTTHUMG00000037468 NG_022754 PGOHUM00000244447 +HGNC:39291 PHBP12 prohibitin pseudogene 12 pseudogene pseudogene Approved 1p32.3 01p32.3 2010-11-26 2010-11-26 100418820 ENSG00000230585 OTTHUMG00000007928 NG_027089 PGOHUM00000244713 +HGNC:39292 PHBP13 prohibitin pseudogene 13 pseudogene pseudogene Approved 13q13.3 13q13.3 2010-11-26 2010-11-26 100418843 ENSG00000234835 OTTHUMG00000016722 NG_024915 PGOHUM00000248566 +HGNC:39293 PHBP14 prohibitin pseudogene 14 pseudogene pseudogene Approved 4q32.3 04q32.3 2010-11-26 2010-11-27 100873751 ENSG00000248913 OTTHUMG00000161191 NG_032242 PGOHUM00000250801 +HGNC:39294 PHBP15 prohibitin pseudogene 15 pseudogene pseudogene Approved 7q11.23 07q11.23 2010-11-26 2015-02-03 100873752 ENSG00000262648 OTTHUMG00000188290 NG_008179 PGOHUM00000302299 +HGNC:51549 PHBP16 prohibitin pseudogene 16 pseudogene pseudogene Approved 11q21 11q21 2015-03-05 2015-03-05 100128102 ENSG00000227593 OTTHUMG00000167752 PGOHUM00000290655 +HGNC:51550 PHBP17 prohibitin pseudogene 17 pseudogene pseudogene Approved 11q24.1 11q24.1 2015-03-05 2015-03-05 106480420 ENSG00000254407 OTTHUMG00000166001 NG_043202 PGOHUM00000290736 +HGNC:51551 PHBP18 prohibitin pseudogene 18 pseudogene pseudogene Approved 12q13.11 12q13.11 2015-03-05 2015-03-05 390311 ENSG00000257885 OTTHUMG00000169900 NG_021687 PGOHUM00000291326 +HGNC:51552 PHBP19 prohibitin pseudogene 19 pseudogene pseudogene Approved 12q13.13 12q13.13 2015-03-05 2015-03-05 494150 ENSG00000257246 OTTHUMG00000169648 NG_004766 PGOHUM00000291337 +HGNC:51553 PHBP20 prohibitin pseudogene 20 pseudogene pseudogene Approved 15q24.1 15q24.1 2015-03-05 2015-03-05 100130579 ENSG00000271072 OTTHUMG00000184900 NG_030305 PGOHUM00000293285 +HGNC:51554 PHBP21 prohibitin pseudogene 21 pseudogene pseudogene Approved 16q12.2 16q12.2 2015-03-05 2015-03-05 390730 ENSG00000260326 OTTHUMG00000173183 NG_022521 PGOHUM00000293863 +HGNC:3182 PHC1 polyhomeotic homolog 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "HPH1|RAE28" EDR1 "early development regulator 1 (homolog of polyhomeotic 1)|polyhomeotic-like 1 (Drosophila)|polyhomeotic homolog 1 (Drosophila)" Sterile alpha motif domain containing 760 1997-09-12 2002-11-15 2016-01-22 2016-10-05 1911 ENSG00000111752 OTTHUMG00000168275 uc001qve.4 U89277 NM_004426 CCDS8597 P78364 9121482 MGI:103248 RGD:1309203 PHC1 602978 326554 +HGNC:34502 PHC1P1 polyhomeotic homolog 1 pseudogene 1 pseudogene pseudogene Approved 12q13.2 12q13.2 PHC1B "polyhomeotic homolog 1B (Drosophila)|polyhomeotic homolog 1 (Drosophila) pseudogene 1" 2008-08-05 2011-09-02 2016-01-22 2016-01-22 653441 ENSG00000179899 OTTHUMG00000170978 XM_934166 PGOHUM00000258678 +HGNC:3183 PHC2 polyhomeotic homolog 2 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 HPH2 EDR2 "early development regulator 2 (homolog of polyhomeotic 2)|polyhomeotic-like 2 (Drosophila)|polyhomeotic homolog 2 (Drosophila)" Sterile alpha motif domain containing 760 1997-09-12 2002-11-15 2016-01-22 2016-10-05 1912 ENSG00000134686 OTTHUMG00000004133 uc001bxg.2 AJ419231 NM_198040 "CCDS378|CCDS379|CCDS81298" Q8IXK0 "9121482|12384788" MGI:1860454 RGD:1307912 PHC2 602979 +HGNC:15682 PHC3 polyhomeotic homolog 3 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 "EDR3|FLJ12967|FLJ12729|HPH3" "early development regulator 3|polyhomeotic like 3" "polyhomeotic like 3 (Drosophila)|polyhomeotic homolog 3 (Drosophila)" Sterile alpha motif domain containing 760 2002-10-03 2016-01-22 2016-10-05 80012 ENSG00000173889 OTTHUMG00000158777 uc003fgl.3 NM_024947 "CCDS46952|CCDS77858" Q8NDX5 "12167701|12384788" MGI:2181434 RGD:1307998 PHC3 +HGNC:8918 PHEX phosphate regulating endopeptidase homolog, X-linked protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "PEX|HPDR1|HYP1|XLH" "HYP|HPDR" phosphate regulating gene with homologies to endopeptidases on the X chromosome (hypophosphatemia, vitamin D resistant rickets) 1986-01-06 2008-07-31 2016-10-05 5251 ENSG00000102174 OTTHUMG00000021241 uc004dah.5 U82970 NM_000444 CCDS14204 P78562 "7550339|9070861" MGI:107489 RGD:3323 PHEXdb Locus Database|http://www.phexdb.mcgill.ca PHEX 300550 124239 M13.091 +HGNC:40445 PHEX-AS1 PHEX antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.11 Xp22.11 PHEX antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873942 ENSG00000224204 OTTHUMG00000021240 uc031tgy.2 NR_046639 +HGNC:8919 PHF1 PHD finger protein 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "MTF2L2|TDRD19C" tudor domain containing 19C "PHD finger proteins|Tudor domain containing" "88|780" 1997-10-10 2016-10-05 5252 ENSG00000112511 OTTHUMG00000031105 uc003oeh.4 AF029678 XR_926249 "CCDS4777|CCDS4778" O43189 "9545646|18385154" MGI:98647 RGD:1303205 PHF1 602881 +HGNC:8920 PHF2 PHD finger protein 2 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "KIAA0662|JHDM1E|CENP-35" "jumonji C domain-containing histone demethylase 1E|centromere protein 35" "PHD finger proteins|Lysine demethylases" "88|485" 1998-04-07 2015-03-27 2015-03-27 2016-10-05 5253 ENSG00000197724 OTTHUMG00000020253 uc004aub.4 AF043725 NM_005392 CCDS35069 O75151 "10051327|20129925" MGI:1338034 RGD:1305228 PHF2 604351 objectId:2697 +HGNC:30241 PHF2P1 PHD finger protein 2 pseudogene 1 pseudogene pseudogene Approved 13q11 13q11 DKFZp686A1627 2010-08-05 2014-11-19 266695 NR_002801 PGOHUM00000248302 +HGNC:38808 PHF2P2 PHD finger protein 2 pseudogene 2 pseudogene pseudogene Approved 13q12.11 13q12.11 2010-08-05 2010-08-05 2014-11-18 100873793 ENSG00000226057 OTTHUMG00000016472 NG_032221 +HGNC:8921 PHF3 PHD finger protein 3 protein-coding gene gene with protein product Approved 6q12 06q12 PHD finger proteins 88 1999-10-13 2014-11-19 23469 ENSG00000118482 OTTHUMG00000014952 uc003pep.2 AF091622 XM_011535648 "CCDS4966|CCDS78155" Q92576 11856869 MGI:2446126 RGD:1304925 PHF3 607789 +HGNC:18000 PHF5A PHD finger protein 5A protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "MGC1346|SF3b14b|INI|bK223H9.2|Rds3|SAP14b|SF3B7" splicing factor 3b, subunit 7 PHD finger proteins 88 2002-11-29 2014-11-19 84844 ENSG00000100410 OTTHUMG00000150966 uc003bab.4 BC007321 NM_032758 CCDS14016 Q7RTV0 "12054543|12234937|18076038" MGI:2156864 RGD:621555 PHF5A +HGNC:32385 PHF5CP PHD finger protein 5C pseudogene pseudogene pseudogene Approved 19p13.11 19p13.11 PHF5AP1 PHD finger protein 5A pseudogene 1 2005-11-15 2006-09-22 2006-09-22 2016-07-25 450232 ENSG00000267178 OTTHUMG00000182149 NG_004711 PGOHUM00000294908 +HGNC:23268 PHF5DP PHD finger protein 5D pseudogene pseudogene pseudogene Approved 3q13.2 03q13.2 2006-09-22 2006-09-22 450238 NG_005422 +HGNC:23267 PHF5EP PHD finger protein 5E pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 2006-09-22 2006-09-22 2006-09-22 450239 NG_005423 +HGNC:23266 PHF5FP PHD finger protein 5F pseudogene pseudogene pseudogene Approved Xq23 Xq23 2006-09-22 2006-09-22 2006-09-22 450246 NG_005424 +HGNC:23269 PHF5GP PHD finger protein 5G pseudogene pseudogene pseudogene Approved 2q24.3 02q24.3 2006-09-22 2006-09-22 450234 NG_005421 +HGNC:23264 PHF5HP PHD finger protein 5H pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 2006-09-22 2006-09-22 2014-02-12 450250 NG_005425 +HGNC:18145 PHF6 PHD finger protein 6 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 "KIAA1823|MGC14797|CENP-31" centromere protein 31 "BFLS|BORJ" Borjeson-Forssman-Lehmann syndrome PHD finger proteins 88 2002-02-28 2016-10-12 84295 ENSG00000156531 OTTHUMG00000022453 uc004exj.4 AB058726 NM_032458 "CCDS14639|CCDS14640" Q8IWS0 "12415272|15466013" MGI:1918248 RGD:2323526 LRG_629|http://www.lrg-sequence.org/LRG/LRG_629 PHF6 300414 117602 +HGNC:18458 PHF7 PHD finger protein 7 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "NYD-SP6|HSPC226" PHD finger proteins 88 2002-07-22 2016-10-05 51533 ENSG00000010318 OTTHUMG00000158495 uc003ddy.5 AY014283 NM_016483 "CCDS2854|CCDS2855" Q9BWX1 "11042152|11829468" MGI:1919088 RGD:1308638 PHF7 +HGNC:20672 PHF8 PHD finger protein 8 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "ZNF422|KIAA1111|JHDM1F" jumonji C domain-containing histone demethylase 1F "PHD finger proteins|Lysine demethylases" "88|485" 2004-04-30 2015-09-04 23133 ENSG00000172943 OTTHUMG00000021622 uc004dst.4 AB029034 NM_015107 "CCDS14355|CCDS55418|CCDS55419|CCDS55420" Q9UPP1 "10470851|20023638|20644565" MGI:2444341 RGD:1561065 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PHF8 PHF8 300560 138583 objectId:2698 +HGNC:18250 PHF10 PHD finger protein 10 protein-coding gene gene with protein product Approved 6q27 06q27 "FLJ10975|XAP135|BAF45a" PHD finger proteins 88 2003-04-01 2014-11-19 55274 ENSG00000130024 OTTHUMG00000016058 uc011egy.3 AF338735 NM_018288 "CCDS5308|CCDS5309" Q8WUB8 11827455 MGI:1919307 RGD:1305266 PHF10 613069 +HGNC:23210 PHF10P1 PHD finger protein 10 pseudogene 1 pseudogene pseudogene Approved Xq28 Xq28 XAP135P 2003-10-13 2012-11-02 158905 AF338734 NG_001314 11827455 +HGNC:17024 PHF11 PHD finger protein 11 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "NY-REN-34|BCAP|IGER" IgE responsiveness (atopic) PHD finger proteins 88 2003-05-08 2016-10-05 51131 ENSG00000136147 OTTHUMG00000016916 uc001vdb.4 AB011031 NM_016119 "CCDS31975|CCDS41887" Q9UIL8 "10508479|15057823" "MGI:1918441|MGI:3645789|MGI:3648476|MGI:1277133|MGI:3644962" RGD:1310853 PHF11 607796 +HGNC:20816 PHF12 PHD finger protein 12 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "PF1|KIAA1523" "PHD finger proteins|EMSY complex" "88|1243" 2003-05-22 2014-11-19 57649 ENSG00000109118 OTTHUMG00000132676 uc002hdj.1 AB040956 NM_020889 "CCDS11247|CCDS32598|CCDS76981" Q96QT6 11390640 MGI:1924057 RGD:1305731 PHF12 +HGNC:22983 PHF13 PHD finger protein 13 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 MGC43399 PHD finger proteins 88 2003-08-11 2016-10-05 148479 ENSG00000116273 OTTHUMG00000001439 uc001aob.5 AK027492 NM_153812 CCDS85 Q86YI8 MGI:2446217 RGD:1308145 PHF13 +HGNC:22203 PHF14 PHD finger protein 14 protein-coding gene gene with protein product Approved 7p21.3 07p21.3 KIAA0783 PHD finger proteins 88 2003-08-11 2014-11-19 9678 ENSG00000106443 OTTHUMG00000150463 uc284pzq.1 AB018326 NM_014660 CCDS47542 O94880 9872452 MGI:1923539 RGD:1563764 PHF14 +HGNC:24566 PHF19 PHD finger protein 19 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "DKFZP727G051|PCL3|MTF2L1|TDRD19B" "polycomb-like 3|tudor domain containing 19B" "PHD finger proteins|Tudor domain containing" "88|780" 2004-01-05 2016-10-05 26147 ENSG00000119403 OTTHUMG00000020577 uc004bks.3 BX640713 XM_045308 "CCDS35116|CCDS35117|CCDS69648|CCDS75889" Q5T6S3 15563832 MGI:1921266 RGD:1310390 PHF19 609740 +HGNC:16098 PHF20 PHD finger protein 20 protein-coding gene gene with protein product Approved 20q11.22-q11.23 20q11.22-q11.23 "dJ1121G12.1|TDRD20A" tudor domain containing 20A C20orf104 chromosome 20 open reading frame 104 "PHD finger proteins|Tudor domain containing" "88|780" 2001-07-17 2004-12-01 2004-12-01 2016-10-11 51230 ENSG00000025293 OTTHUMG00000032367 uc002xek.2 AL109965 NM_016436 CCDS13268 Q9BVI0 MGI:2444148 RGD:1305020 PHF20 610335 +HGNC:24280 PHF20L1 PHD finger protein 20-like 1 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 "CGI-72|FLJ13649|MGC64923|FLJ21615|TDRD20B" tudor domain containing 20B "PHD finger proteins|Tudor domain containing" "88|780" 2004-12-01 2014-11-19 51105 ENSG00000129292 OTTHUMG00000148656 uc003ytt.4 AF230666 NM_016018 "CCDS6367|CCDS6368|CCDS75791" A8MW92 "10810093|24492612" MGI:2444412 RGD:1560141 PHF20L1 +HGNC:24156 PHF21A PHD finger protein 21A protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "BHC80|KIAA1696|BM-006" PHD finger proteins 88 2005-02-07 2014-11-19 51317 ENSG00000135365 OTTHUMG00000167038 uc001ncc.5 AL359593 NM_016621 "CCDS31474|CCDS44578" Q96BD5 "11214970|12032298" MGI:2384756 RGD:1560612 PHF21A 608325 308053 +HGNC:25161 PHF21B PHD finger protein 21B protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "BHC80L|FLJ34161" PHF4 PHD finger protein 4 PHD finger proteins 88 2005-02-07 2014-11-19 112885 ENSG00000056487 OTTHUMG00000151199 uc003bfn.4 AK091480 NM_138415 "CCDS14061|CCDS56234|CCDS63504|CCDS46727" Q96EK2 12477932 MGI:2443812 RGD:1308739 PHF21B 616727 +HGNC:28428 PHF23 PHD finger protein 23 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MGC2941|FLJ16355" PHD finger proteins 88 2005-08-25 2015-08-25 79142 ENSG00000040633 OTTHUMG00000177972 uc002gfa.3 AK122791 NM_024297 "CCDS42250|CCDS67143|CCDS67144" Q9BUL5 MGI:1925496 RGD:1302969 PHF23 612910 +HGNC:29180 PHF24 PHD finger protein 24 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 KIAA1045 KIAA1045 PHD finger proteins 88 2004-01-06 2015-06-03 2015-06-03 2016-10-05 23349 ENSG00000122733 OTTHUMG00000019844 AB028968 NM_001304333 CCDS43796 Q9UPV7 10470851 MGI:2140712 RGD:1559864 +HGNC:8923 PHGDH phosphoglycerate dehydrogenase protein-coding gene gene with protein product Approved 1p12 01p12 "SERA|PGDH|PDG" 1999-11-22 2015-08-25 26227 ENSG00000092621 OTTHUMG00000012100 uc001ehz.4 BC011262 NM_006623 CCDS904 O43175 MGI:1355330 RGD:61987 PHGDH 606879 117785 1.1.1.95 +HGNC:37226 PHGR1 proline, histidine and glycine rich 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 proline/histidine/glycine-rich 1 2009-10-08 2016-06-06 2016-06-06 644844 ENSG00000233041 OTTHUMG00000172416 uc059hrl.1 NM_001145643 CCDS45225 C9JFL3 MGI:1858382 RGD:1566202 PHGR1 +HGNC:15673 PHIP pleckstrin homology domain interacting protein protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "ndrp|FLJ20705|DCAF14|BRWD2" DDB1 and CUL4 associated factor 14 WDR11 "WD repeat domain containing|DDB1 and CUL4 associated factors" "362|498" 2001-05-04 2016-10-05 55023 ENSG00000146247 OTTHUMG00000015071 uc003pir.4 AF310250 XM_005248729 CCDS4987 Q8WWQ0 11018022 MGI:1932404 RGD:1564964 PHIP 612870 objectId:2776 +HGNC:8925 PHKA1 phosphorylase kinase regulatory subunit alpha 1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 PHKA phosphorylase kinase, alpha 1 (muscle) 1989-02-23 2016-05-16 2016-10-05 5255 ENSG00000067177 OTTHUMG00000022696 uc004eax.5 XR_001755696 "CCDS14421|CCDS48137|CCDS55453" P46020 MGI:97576 RGD:621522 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PHKA1 PHKA1 311870 117790 2.7.11.19 +HGNC:40446 PHKA1-AS1 PHKA1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq13.2 Xq13.2 PHKA1 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100506671 ENSG00000231944 OTTHUMG00000021815 uc033eic.2 +HGNC:33919 PHKA1P1 phosphorylase kinase regulatory subunit alpha 1 pseudogene pseudogene pseudogene Approved 1p22.2 01p22.2 2007-12-18 2016-05-16 2016-05-16 646780 ENSG00000232882 OTTHUMG00000057595 NG_007661 12825073 PGOHUM00000244096 +HGNC:8926 PHKA2 phosphorylase kinase regulatory subunit alpha 2 protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 "PHK|PYK" 1991-05-09 2016-05-16 2016-10-05 5256 ENSG00000044446 OTTHUMG00000021222 uc004cyv.5 NM_000292 CCDS14190 P46019 2387090 MGI:97577 RGD:1596945 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PHKA2 PHKA2 300798 117793 2.7.11.19 +HGNC:44110 PHKA2-AS1 PHKA2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.13 Xp22.13 PHKA2 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100132163 ENSG00000237836 OTTHUMG00000021220 uc004cyt.4 BC073810 NR_029379 +HGNC:8927 PHKB phosphorylase kinase regulatory subunit beta protein-coding gene gene with protein product Approved 16q12.1 16q12.1 phosphorylase kinase, beta 1989-02-23 2016-05-16 2016-10-05 5257 ENSG00000102893 OTTHUMG00000133102 uc002eeu.5 XM_005255983 "CCDS10729|CCDS42161" Q93100 MGI:97578 RGD:620186 PHKB 172490 117797 2.7.11.19 +HGNC:8928 PHKBP1 phosphorylase kinase regulatory subunit beta pseudogene 1 pseudogene pseudogene Approved 20p12.3 20p12.3 1995-02-22 2016-05-16 2016-07-22 5258 ENSG00000226262 OTTHUMG00000031845 NG_024957 PGOHUM00000296894 +HGNC:8929 PHKBP2 phosphorylase kinase regulatory subunit beta pseudogene 2 pseudogene pseudogene Approved 14q13.3 14q13.3 1995-02-22 2016-05-16 2016-05-16 5259 ENSG00000258467 OTTHUMG00000170729 X85226 NG_001173 8681948 +HGNC:8930 PHKG1 phosphorylase kinase catalytic subunit gamma 1 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 PHKG phosphorylase kinase, gamma 1 (muscle) 1989-02-23 2016-05-16 2016-05-16 5260 ENSG00000164776 OTTHUMG00000023869 uc003trz.3 X80590 NM_006213 "CCDS5525|CCDS59057" Q16816 8530014 MGI:97579 RGD:3325 PHKG1 172470 352609 objectId:2145 2.7.11.19 +HGNC:33916 PHKG1P1 phosphorylase kinase catalytic subunit gamma 1 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 phosphorylase kinase, gamma 1 pseudogene 1 2007-12-18 2016-05-16 2016-05-16 643941 ENSG00000226075 OTTHUMG00000156263 NG_005544 12825073 PGOHUM00000232780 +HGNC:33917 PHKG1P2 phosphorylase kinase catalytic subunit gamma 1 pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 phosphorylase kinase, gamma 1 pseudogene 2 2007-12-18 2016-05-16 2016-05-16 644032 ENSG00000228645 OTTHUMG00000156389 NG_005545 12825073 PGOHUM00000233323 +HGNC:8932 PHKG1P3 phosphorylase kinase catalytic subunit gamma 1 pseudogene 3 pseudogene pseudogene Approved 11p11.12 11p11.12 PHKg1ps2 PHKGL phosphorylase kinase, gamma-like 1989-05-10 2007-12-18 2016-05-16 2016-05-16 5262 NG_005543 12825073 +HGNC:33918 PHKG1P4 phosphorylase kinase catalytic subunit gamma 1 pseudogene 4 pseudogene pseudogene Approved 7p11.2 07p11.2 phosphorylase kinase, gamma 1 pseudogene 4 2007-12-18 2016-05-16 2016-05-16 100151641 ENSG00000229508 OTTHUMG00000156681 NG_007655 PGOHUM00000232754 +HGNC:8931 PHKG2 phosphorylase kinase catalytic subunit gamma 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 phosphorylase kinase, gamma 2 (testis) 1993-06-18 2016-05-16 2016-05-16 5261 ENSG00000156873 OTTHUMG00000132400 uc059thf.1 "S73483|M31606" NM_000294 "CCDS10690|CCDS54002" P15735 "2915644|8020963" MGI:1916211 RGD:620024 PHKG2 172471 159810 objectId:2147 2.7.11.19 +HGNC:8933 PHLDA1 pleckstrin homology like domain family A member 1 protein-coding gene gene with protein product Approved 12q15 12q15 "TDAG51|DT1P1B11|PHRIP" proline-histidine rich protein pleckstrin homology-like domain, family A, member 1 1999-10-19 2016-01-27 2016-01-27 22822 ENSG00000139289 OTTHUMG00000169783 uc058rcr.1 Z50194 NM_007350 CCDS31861 Q8WV24 "12384558|15037619" MGI:1096880 RGD:3836 PHLDA1 605335 +HGNC:12385 PHLDA2 pleckstrin homology like domain family A member 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "IPL|BWR1C|HLDA2" TSSC3 "tumor suppressing subtransferable candidate 3|pleckstrin homology-like domain, family A, member 2" Pleckstrin homology domain containing 682 1998-06-22 2003-10-01 2016-01-27 2016-10-12 7262 ENSG00000181649 OTTHUMG00000010926 uc001lxa.2 AF035444 NM_003311 CCDS7741 Q53GA4 "9328465|9403053" MGI:1202307 RGD:1304755 LRG_1043|http://www.lrg-sequence.org/LRG/LRG_1043 PHLDA2 602131 +HGNC:8934 PHLDA3 pleckstrin homology like domain family A member 3 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 TIH1 pleckstrin homology-like domain, family A, member 2 pleckstrin homology-like domain, family A, member 3 1999-10-19 2016-01-27 2016-10-05 23612 ENSG00000174307 OTTHUMG00000035767 uc001gwq.5 AF151100 NM_012396 CCDS1412 Q9Y5J5 MGI:1351485 RGD:1310502 PHLDA3 607054 +HGNC:23697 PHLDB1 pleckstrin homology like domain family B member 1 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "FLJ00141|LL5a|KIAA0638" pleckstrin homology-like domain, family B, member 1 Pleckstrin homology domain containing 682 2004-01-12 2016-01-27 2016-01-27 23187 ENSG00000019144 OTTHUMG00000166341 uc001ptr.3 NM_015157 "CCDS8401|CCDS44750" Q86UU1 14532993 MGI:2143230 RGD:620878 PHLDB1 612834 +HGNC:29573 PHLDB2 pleckstrin homology like domain family B member 2 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "LL5beta|FLJ21791|LL5b" pleckstrin homology-like domain, family B, member 2 Pleckstrin homology domain containing 682 2004-03-11 2016-01-27 2016-10-05 90102 ENSG00000144824 OTTHUMG00000159282 uc010hqa.3 NM_145753 "CCDS2962|CCDS46885|CCDS46886" Q86SQ0 12376540 MGI:2444981 RGD:1591402 PHLDB2 610298 +HGNC:30499 PHLDB3 pleckstrin homology like domain family B member 3 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 FLJ40193 pleckstrin homology-like domain, family B, member 3 Pleckstrin homology domain containing 682 2004-07-12 2016-01-27 2016-01-27 653583 ENSG00000176531 OTTHUMG00000150693 uc002own.5 XM_005259169 CCDS12621 Q6NSJ2 MGI:3642959 RGD:1561121 PHLDB3 +HGNC:20610 PHLPP1 PH domain and leucine rich repeat protein phosphatase 1 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "KIAA0606|SCOP|PPM3A" protein phosphatase, Mg2+/Mn2+ dependent 3A "PLEKHE1|PHLPP" "pleckstrin homology domain containing, family E (with leucine rich repeats) member 1|PH domain and leucine rich repeat protein phosphatase" "Pleckstrin homology domain containing|Protein phosphatases, Mg2+/Mn2+ dependent" "682|701" 2003-03-05 2009-05-26 2009-05-26 2016-10-05 23239 ENSG00000081913 OTTHUMG00000150629 uc021ule.2 AB011178 NM_194449 CCDS45881 O60346 "10570941|15808505" MGI:2138327 RGD:621308 PHLPP1 609396 +HGNC:29149 PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 "KIAA0931|PPM3B" protein phosphatase, Mg2+/Mn2+ dependent 3B PHLPPL PH domain and leucine rich repeat protein phosphatase-like "Pleckstrin homology domain containing|Protein phosphatases, Mg2+/Mn2+ dependent" "682|701" 2005-04-07 2009-05-26 2009-05-26 2016-07-18 23035 ENSG00000040199 OTTHUMG00000176867 uc002fax.5 BX647823 NM_015020 "CCDS32479|CCDS73910" Q6ZVD8 17386267 MGI:2444928 RGD:1562857 PHLPP2 611066 3.1.3.16 +HGNC:16815 PHOSPHO1 phosphoethanolamine/phosphocholine phosphatase protein-coding gene gene with protein product Approved 17q21.32 17q21.32 phosphatase, orphan 1 HAD Asp-based non-protein phosphatases 1045 2001-10-30 2016-04-01 2016-04-01 162466 ENSG00000173868 OTTHUMG00000161305 uc010wlv.2 AJ457189 NM_001143804 "CCDS11547|CCDS45726" Q8TCT1 12464021 MGI:2447348 RGD:1306182 PHOSPHO1 3.1.3.75 +HGNC:28316 PHOSPHO2 phosphatase, orphan 2 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 MGC22679 HAD Asp-based non-protein phosphatases 1045 2004-12-06 2015-08-25 493911 ENSG00000144362 OTTHUMG00000153981 uc021vsh.2 BC022324 NM_001008489 CCDS33319 Q8TCD6 16054448 MGI:1920623 RGD:1359274 PHOSPHO2 +HGNC:691 PHOX2A paired like homeobox 2a protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "PMX2A|CFEOM2" "ARIX|FEOM2" "aristaless (Drosophila) homeobox, aristaless homeobox (Drosophila), fibrosis of extraocular muscles, congenital, 2, autosomal recessive|paired-like (aristaless) homeobox 2a" PRD class homeoboxes and pseudogenes 521 1995-12-11 2003-02-14 2016-01-18 2016-01-18 401 ENSG00000165462 OTTHUMG00000167899 uc001osh.4 AF022722 NM_005169 CCDS8214 O14813 "8661014|11600883" MGI:106633 RGD:621323 PHOX2A 602753 8489 117799 +HGNC:9143 PHOX2B paired like homeobox 2b protein-coding gene gene with protein product Approved 4p13 04p13 "Phox2b|NBPhox" PMX2B paired mesoderm homeobox 2b PRD class homeoboxes and pseudogenes 521 1999-01-11 2003-02-14 2016-01-18 2016-10-12 8929 ENSG00000109132 OTTHUMG00000099379 uc003gwf.4 D82344 NM_003924 CCDS3463 Q99453 "9039501|10395798" MGI:1100882 RGD:1560582 LRG_513|http://www.lrg-sequence.org/LRG/LRG_513 PHOX2B 603851 8490 117805 +HGNC:30033 PHPT1 phosphohistidine phosphatase 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "PHP14|HSPC141|CGI-202|DKFZp564M173|bA216L13.10" "phosphohistidine phosphatase 14kDa| sex-regulated protein janus-a" Protein phosphatases 703 2004-03-23 2014-11-19 29085 ENSG00000054148 OTTHUMG00000020950 uc004cjq.6 AF131857 NM_014172 "CCDS7009|CCDS48060" Q9NRX4 "11042152|8619474" MGI:1922704 RGD:1311355 PHPT1 610167 3.1.3.- +HGNC:24351 PHRF1 PHD and ring finger domains 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "KIAA1542|PPP1R125" "CTD binding SR like protein rA9|protein phosphatase 1, regulatory subunit 125" RNF221 "Ring finger proteins|PHD finger proteins|Protein phosphatase 1 regulatory subunits" "58|88|694" 2008-08-14 2014-06-13 57661 ENSG00000070047 OTTHUMG00000165141 uc010qwc.4 BC004950 NM_020901 "CCDS44507|CCDS65987|CCDS65988|CCDS65989" Q9P1Y6 MGI:2141847 RGD:708360 PHRF1 611780 +HGNC:8939 PHTF1 putative homeodomain transcription factor 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 PHTF 1999-03-24 2015-02-16 10745 ENSG00000116793 OTTHUMG00000011800 uc057jno.1 AJ011863 NM_006608 "CCDS861|CCDS81359" Q9UMS5 10395808 MGI:1332671 RGD:620426 PHTF1 604950 +HGNC:13411 PHTF2 putative homeodomain transcription factor 2 protein-coding gene gene with protein product Approved 7q11.23-q21.11 07q11.23-q21.11 DKFZp434D166 2001-06-25 2016-10-11 57157 ENSG00000006576 OTTHUMG00000155557 uc064ese.1 AL136883 NM_020432 "CCDS47621|CCDS47622|CCDS47623|CCDS47624" Q8N3S3 10729229 MGI:1916020 RGD:1310593 PHTF2 616785 +HGNC:8940 PHYH phytanoyl-CoA 2-hydroxylase protein-coding gene gene with protein product Approved 10p13 10p13 "PAHX|RD|PHYH1" "Refsum disease|phytanoyl-CoA dioxygenase" "phytanoyl-CoA hydroxylase (Refsum disease)|phytanoyl-CoA hydroxylase" 1997-10-27 2006-01-09 2015-08-25 5264 ENSG00000107537 OTTHUMG00000017693 uc001imf.4 NM_001323084 "CCDS7097|CCDS41489" O14832 9326939 MGI:891978 RGD:620317 PHYH 602026 117810 1.14.11.18 +HGNC:23396 PHYHD1 phytanoyl-CoA dioxygenase domain containing 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 MGC16638 2003-11-14 2016-10-05 254295 ENSG00000175287 OTTHUMG00000020764 uc004bwo.3 BC051300 NM_174933 "CCDS6914|CCDS43885|CCDS43886" Q5SRE7 12477932 MGI:3612860 RGD:1310377 PHYHD1 +HGNC:16865 PHYHIP phytanoyl-CoA 2-hydroxylase interacting protein protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "KIAA0273|PAHX-AP" DYRK1AP3 "phytanoyl-CoA hydroxylase interacting protein|DYRK1A interacting protein 3" 2001-11-16 2006-01-09 2016-10-05 9796 ENSG00000168490 OTTHUMG00000163776 uc003xbj.5 D87463 NM_014759 CCDS43723 Q92561 "9039502|10686344" MGI:1860417 RGD:1305790 PHYHIP 608511 +HGNC:29378 PHYHIPL phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding gene gene with protein product Approved 10q21.1 10q21.1 "KIAA1796|Em:AC025038.1" "phytanoyl-CoA hydroxylase interacting protein-like|phytanoyl-CoA 2-hydroxylase interacting protein-like" Fibronectin type III domain containing 555 2004-04-16 2016-02-01 2016-02-01 84457 ENSG00000165443 OTTHUMG00000018276 uc001jkk.5 AL834339 NM_032439 "CCDS7254|CCDS44405" Q96FC7 11347906 MGI:1918161 RGD:1307967 PHYHIPL +HGNC:28249 PHYKPL 5-phosphohydroxy-L-lysine phospho-lyase protein-coding gene gene with protein product Approved 5q35.3 05q35.3 MGC15875 5-phosphonooxy-L-lysine phospho-lyase AGXT2L2 alanine-glyoxylate aminotransferase 2-like 2 2006-08-11 2013-06-12 2013-06-12 2014-11-19 85007 ENSG00000175309 OTTHUMG00000130892 BC037567 NM_032921 CCDS4434 Q8IUZ5 22241472 MGI:1920197 RGD:2293818 614683 4.2.3.134 +HGNC:8947 PI3 peptidase inhibitor 3 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "ESI|SKALP|ELAFIN|WAP3|WFDC14|cementoin" "skin-derived antileukoproteinase|trappin-2" "protease inhibitor 3, skin-derived (SKALP)|peptidase inhibitor 3, skin-derived" WAP four-disulfide core domain containing 361 1993-07-27 2015-12-16 2015-12-16 5266 ENSG00000124102 OTTHUMG00000032567 uc002xng.4 D13156 NM_002638 CCDS13344 P19957 "8287685|12206714" PI3 182257 I17.002 +HGNC:30031 PI4K2A phosphatidylinositol 4-kinase type 2 alpha protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "PI4KII|DKFZP761G1923|PIK42A" 2007-08-02 2016-10-05 55361 ENSG00000155252 OTTHUMG00000018863 uc001kog.2 AF070611 NM_018425 CCDS7469 Q9BTU6 "11244087|11279162" MGI:1934031 RGD:620485 PI4K2A 609763 objectId:2498 +HGNC:18215 PI4K2B phosphatidylinositol 4-kinase type 2 beta protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "PI4KIIB|FLJ11105|PIK42B" Minor histocompatibility antigens 870 2005-08-31 2016-10-05 55300 ENSG00000038210 OTTHUMG00000128564 uc003grk.3 AK001967 NM_018323 CCDS3433 Q8TCG2 11923287 MGI:1914323 RGD:1359515 PI4K2B 612101 objectId:2499 +HGNC:8983 PI4KA phosphatidylinositol 4-kinase alpha protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "PI4K-ALPHA|pi4K230" PIK4CA phosphatidylinositol 4-kinase, catalytic, alpha 1998-04-07 2007-08-02 2016-02-23 2016-04-25 5297 ENSG00000241973 OTTHUMG00000167440 uc002zsz.5 L36151 NM_058004 CCDS33603 P42356 "7961848|8662589" MGI:2448506 RGD:621213 PI4KA 600286 434516 objectId:2148 +HGNC:33576 PI4KAP1 phosphatidylinositol 4-kinase alpha pseudogene 1 pseudogene pseudogene Approved 22q11.21 22q11.21 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 1 2007-08-02 2016-02-23 2016-02-23 728233 ENSG00000274602 OTTHUMG00000188354 NR_003563 Q8N8J0 PGOHUM00000297450 +HGNC:33577 PI4KAP2 phosphatidylinositol 4-kinase alpha pseudogene 2 pseudogene pseudogene Approved 22q11.21 22q11.21 phosphatidylinositol 4-kinase, catalytic, alpha pseudogene 2 2007-08-02 2016-02-23 2016-02-23 375133 ENSG00000183506 OTTHUMG00000150827 XR_001736619 A4QPH2 PI4KAP2 PGOHUM00000259689 +HGNC:8984 PI4KB phosphatidylinositol 4-kinase beta protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "PI4K-BETA|pi4K92" PIK4CB phosphatidylinositol 4-kinase, catalytic, beta 1998-04-07 2007-08-02 2016-02-23 2016-10-05 5298 ENSG00000143393 OTTHUMG00000012348 uc001exr.4 AB005910 NM_002651 "CCDS993|CCDS55637|CCDS55638|CCDS81376" Q9UBF8 "9020160|9405938" MGI:1334433 RGD:621214 PI4KB 602758 objectId:2149 +HGNC:8954 PI8L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-09-13 +HGNC:8946 PI15 peptidase inhibitor 15 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 P25TI protease inhibitor 15 2000-08-11 2005-08-17 2016-10-05 51050 ENSG00000137558 OTTHUMG00000164528 uc003yal.3 D45027 NM_015886 CCDS6218 O43692 "8882727|9473672" MGI:1934659 RGD:1309577 PI15 607076 +HGNC:21245 PI16 peptidase inhibitor 16 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "MGC45378|dJ90K10.5|MSMBBP|CD364" microseminoprotein, beta-binding protein protease inhibitor 16 CD molecules 471 2003-05-29 2005-08-17 2016-10-05 221476 ENSG00000164530 OTTHUMG00000014611 uc021yzd.2 NM_153370 CCDS34440 Q6UXB8 MGI:1921366 RGD:1304760 PI16 +HGNC:25338 PIANP PILR alpha associated neural protein protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "DKFZp547D2210|PANP" PILR-associating neural protein C12orf53 chromosome 12 open reading frame 53 2006-01-24 2012-08-17 2012-08-17 2012-08-17 196500 ENSG00000139200 OTTHUMG00000168664 uc001qqf.3 BC035736 NM_153685 "CCDS44818|CCDS58205" Q8IYJ0 12975309 MGI:2441908 RGD:1304952 616065 +HGNC:2752 PIAS1 protein inhibitor of activated STAT 1 protein-coding gene gene with protein product Approved 15q23 15q23 "GBP|GU/RH-II|ZMIZ3" zinc finger, MIZ-type containing 3 DDXBP1 DEAD/H (Asp-Glu-Ala-Asp/His) box binding protein 1 Zinc fingers MIZ-type 85 1998-11-06 2002-04-19 2015-11-13 2016-01-15 8554 ENSG00000033800 OTTHUMG00000172645 uc002aqz.4 AF077951 NM_001320687 "CCDS45290|CCDS81902" O75925 "9724754|9177271" MGI:1913125 RGD:1307843 PIAS1 603566 +HGNC:17311 PIAS2 protein inhibitor of activated STAT 2 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "PIASX-BETA|miz|PIASX-ALPHA|ZMIZ4" zinc finger, MIZ-type containing 4 Zinc fingers MIZ-type 85 2004-06-02 2015-11-13 2016-01-15 9063 ENSG00000078043 OTTHUMG00000179301 uc002lck.4 AF077953 NM_004671 "CCDS32824|CCDS32825" O75928 "9724754|9256341" MGI:1096566 RGD:71056 PIAS2 603567 +HGNC:16861 PIAS3 protein inhibitor of activated STAT 3 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 "FLJ14651|ZMIZ5" zinc finger, MIZ-type containing 5 Zinc fingers MIZ-type 85 2004-06-02 2015-11-13 2016-10-05 10401 ENSG00000131788 OTTHUMG00000013750 uc001eoc.2 AB021868 NM_006099 CCDS72866 Q9Y6X2 10319586 MGI:1913126 RGD:708413 PIAS3 605987 +HGNC:17002 PIAS4 protein inhibitor of activated STAT 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "Piasg|PIASY|FLJ12419|ZMIZ6" zinc finger, MIZ-type containing 6 Zinc fingers MIZ-type 85 2004-06-02 2015-11-13 2015-11-13 51588 ENSG00000105229 OTTHUMG00000181759 uc002lzg.4 AF077952 NM_015897 CCDS12118 Q8N2W9 9724754 MGI:2136940 RGD:1308737 PIAS4 605989 +HGNC:23352 PIBF1 progesterone immunomodulatory binding factor 1 protein-coding gene gene with protein product Approved 13q21.33-q22.1 13q21.33-q22.1 CEP90 progesterone-induced blocking factor 1 C13orf24 chromosome 13 open reading frame 24 2004-04-16 2007-10-17 2007-10-17 2016-10-11 10464 ENSG00000083535 OTTHUMG00000017071 uc001vjc.4 AF330046 NM_006346 CCDS31991 Q8WXW3 11935316 MGI:1261910 RGD:1305077 PIBF1 607532 +HGNC:15514 PICALM phosphatidylinositol binding clathrin assembly protein protein-coding gene gene with protein product Approved 11q14.2 11q14.2 "CALM|CLTH" 2001-04-06 2016-10-05 8301 ENSG00000073921 OTTHUMG00000166981 uc001pbm.4 BC048259 NM_007166 "CCDS8272|CCDS31653|CCDS55783|CCDS55784" Q13492 8643484 MGI:2385902 RGD:621054 PICALM 603025 371077 +HGNC:9394 PICK1 protein interacting with PRKCA 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "dJ1039K5|MGC15204" PRKCABP "protein kinase C, alpha binding protein|protein interacting with PRKCA" "PDZ domain containing|Classical BAR domain containing" "1220|1292" 1999-10-19 2006-02-14 2006-02-14 2014-11-19 9463 ENSG00000100151 OTTHUMG00000151159 uc003aus.4 AL049654 NM_012407 CCDS13965 Q9NRD5 "10340301|10591208" MGI:894645 RGD:69437 PICK1 605926 438982 +HGNC:19725 PICSAR P38 inhibited cutaneous squamous cell carcinoma associated lincRNA non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 "PRED74|NLC1-C" narcolepsy candidate region 1 gene C "C21orf113|NCRNA00162|LINC00162" "chromosome 21 open reading frame 113|non-protein coding RNA 162|long intergenic non-protein coding RNA 162" Long non-coding RNAs 788 2003-10-02 2016-04-28 2016-04-28 2016-04-28 378825 ENSG00000275874 OTTHUMG00000090292 uc032qby.2 BC027456 NR_024089 "16826516|27049681" +HGNC:26084 PID1 phosphotyrosine interaction domain containing 1 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 "NYGGF4|FLJ20701" 2007-02-02 2014-11-19 55022 ENSG00000153823 OTTHUMG00000133191 uc002vpu.5 AK096636 NM_017933 "CCDS2471|CCDS42830|CCDS82577|CCDS82578" Q7Z2X4 "17124247|16815647|15221005" MGI:2138391 RGD:1560766 PID1 612930 +HGNC:16491 PIDD1 p53-induced death domain protein 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "MGC16925|DKFZp434D229" "LRDD|PIDD" "leucine-rich repeats and death domain containing|p53-induced death domain protein" 2001-09-04 2014-05-01 2014-05-01 2014-11-18 55367 ENSG00000177595 OTTHUMG00000133306 AF229178 NM_145886 "CCDS7716|CCDS44508" Q9HB75 10825539 MGI:1889507 RGD:1311792 605247 +HGNC:28993 PIEZO1 piezo type mechanosensitive ion channel component 1 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 KIAA0233 FAM38A "family with sequence similarity 38, member A|piezo-type mechanosensitive ion channel component 1" 2004-04-29 2011-08-31 2016-02-01 2016-02-01 9780 ENSG00000103335 OTTHUMG00000156776 uc010vpb.3 D87071 NM_014745 CCDS54058 Q92508 "20813920|21056836|21299953|21696149" MGI:3603204 RGD:1308822 PIEZO1 611184 303176 +HGNC:16214 PIEZO1P1 piezo type mechanosensitive ion channel component 1 pseudogene 1 pseudogene pseudogene Approved 20q13.32 20q13.32 bA164D18.1 "C20orf83|FAM38CP" "chromosome 20 open reading frame 83|family with sequence similarity 38, member C, pseudogene|piezo-type mechanosensitive ion channel component 1 pseudogene 1" 2001-07-17 2011-08-31 2016-02-01 2016-02-01 128615 ENSG00000233686 OTTHUMG00000032868 AL389889 NG_011695 PGOHUM00000247569 +HGNC:42861 PIEZO1P2 piezo type mechanosensitive ion channel component 1 pseudogene 2 pseudogene pseudogene Approved 20q13.32 20q13.32 piezo-type mechanosensitive ion channel component 1 pseudogene 2 2011-08-31 2016-02-01 2016-02-01 100874493 ENSG00000237121 OTTHUMG00000032850 NG_032531 PGOHUM00000259642 +HGNC:26270 PIEZO2 piezo type mechanosensitive ion channel component 2 protein-coding gene gene with protein product Approved 18p11.22-p11.21 18p11.22-p11.21 "FLJ23403|FLJ23144|HsT748|HsT771|FLJ34907" "FAM38B2|C18orf30|C18orf58|FAM38B" "chromosome 18 open reading frame 30|chromosome 18 open reading frame 58|family with sequence similarity 38, member B|piezo-type mechanosensitive ion channel component 2" 2004-04-29 2011-08-31 2016-02-01 2016-10-11 63895 ENSG00000154864 OTTHUMG00000178507 uc002kos.3 AK027056 NM_022068 CCDS11850 Q9H5I5 "20813920|21056836|21299953" MGI:1918781 RGD:1582973 PIEZO2 613629 332055 +HGNC:26220 PIF1 PIF1 5'-to-3' DNA helicase protein-coding gene gene with protein product Approved 15q22.31 15q22.31 FLJ22692 C15orf20 "chromosome 15 open reading frame 20|PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)" DNA helicases 1167 2004-02-23 2006-11-24 2013-05-13 2016-10-05 80119 ENSG00000140451 OTTHUMG00000132974 uc002ant.4 AK026345 NM_025049 "CCDS10195|CCDS66797" Q9H611 "10926538|16522649" MGI:2143057 RGD:1586053 PIF1 610953 3.6.4.12 +HGNC:27009 PIFO primary cilia formation protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "FLJ23853|pitchfork" C1orf88 chromosome 1 open reading frame 88 2005-05-27 2012-10-10 2012-10-10 2014-11-19 128344 ENSG00000173947 OTTHUMG00000011168 uc001eaw.3 BC050319 NM_181643 "CCDS833|CCDS72836" Q8TCI5 20643351 MGI:1923670 RGD:1586282 614234 +HGNC:8957 PIGA phosphatidylinositol glycan anchor biosynthesis class A protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 GPI3 "paroxysmal nocturnal hemoglobinuria|phosphatidylinositol N-acetylglucosaminyltransferase" phosphatidylinositol glycan, class A (paroxysmal nocturnal hemoglobinuria) "Glycosyl transferases group 1 domain containing|Phosphatidylinositol glycan anchor biosynthesis" "427|680" 1993-10-28 2015-11-06 2016-10-12 5277 ENSG00000165195 OTTHUMG00000021174 uc004cwr.5 BC038236 NM_002641 "CCDS14165|CCDS48086" P37287 8500164 MGI:99461 RGD:1589723 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PIGA|LRG_160|http://www.lrg-sequence.org/LRG/LRG_160" PIGA 311770 231527 2.4.1.198 +HGNC:8958 PIGAP1 phosphatidylinositol glycan anchor biosynthesis class A pseudogene 1 pseudogene pseudogene Approved 12q21 12q21 1994-12-13 2015-11-06 2015-11-06 5278 X77457 NG_001174 8081362 +HGNC:8959 PIGB phosphatidylinositol glycan anchor biosynthesis class B protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "GPI mannosyltransferase 3|dol-P-Man dependent GPI mannosyltransferase" phosphatidylinositol glycan, class B "Dolichyl D-mannosyl phosphate dependent mannosyltransferases|Phosphatidylinositol glycan anchor biosynthesis" "430|680" 1999-04-15 2015-11-06 2015-11-06 9488 ENSG00000069943 OTTHUMG00000172654 uc002act.4 D42138 NM_004855 CCDS61641 Q92521 8861954 MGI:1891825 RGD:1307251 PIGB 604122 +HGNC:50696 PIGBOS1 PIGB opposite strand 1 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 2014-06-09 2015-05-11 101928527 ENSG00000225973 OTTHUMG00000172653 NM_001308421 CCDS81884 A0A0B4J2F0 RGD:6502569 +HGNC:8960 PIGC phosphatidylinositol glycan anchor biosynthesis class C protein-coding gene gene with protein product Approved 1q24.3 01q24.3 phosphatidylinositol N-acetylglucosaminyltransferase phosphatidylinositol glycan, class C Phosphatidylinositol glycan anchor biosynthesis 680 1997-04-16 2015-11-06 2016-10-05 5279 ENSG00000135845 OTTHUMG00000034751 uc021pey.2 BC006539 NM_153747 CCDS1302 Q92535 "8806613|9325057" MGI:1914542 RGD:1311337 PIGC 601730 2.4.1.198 +HGNC:8961 PIGCP1 phosphatidylinositol glycan anchor biosynthesis class C pseudogene 1 pseudogene pseudogene Approved 11p13 11p13 1997-04-16 2015-11-06 2015-11-06 5280 ENSG00000213713 NG_001175 9325057 PGOHUM00000242204 +HGNC:45149 PIGCP2 phosphatidylinositol glycan anchor biosynthesis class C pseudogene 2 pseudogene pseudogene Approved 7q31.1 07q31.1 2013-02-25 2015-11-06 2015-11-06 100128307 ENSG00000229626 OTTHUMG00000154814 NG_022571 PGOHUM00000233522 +HGNC:8962 PIGF phosphatidylinositol glycan anchor biosynthesis class F protein-coding gene gene with protein product Approved 2p21 02p21 phosphatidylinositol glycan, class F Phosphatidylinositol glycan anchor biosynthesis 680 1993-10-28 2015-11-06 2016-10-05 5281 ENSG00000151665 OTTHUMG00000128816 uc002rvd.4 NM_173074 "CCDS1827|CCDS1828" Q07326 "8575782|8463218" MGI:99462 RGD:1584658 PIGF 600153 +HGNC:8963 PIGFP1 phosphatidylinositol glycan anchor biosynthesis class F pseudogene 1 pseudogene pseudogene Approved 5q35.3 05q35.3 1996-12-20 2015-11-06 2016-10-05 5282 ENSG00000253869 OTTHUMG00000163582 D49727 NG_001176 8575782 PGOHUM00000235862 +HGNC:45150 PIGFP2 phosphatidylinositol glycan anchor biosynthesis class F pseudogene 2 pseudogene pseudogene Approved 9q33.3 09q33.3 2013-02-25 2015-11-06 2015-11-06 100422349 ENSG00000234881 OTTHUMG00000020642 NG_023955 PGOHUM00000236769 +HGNC:45151 PIGFP3 phosphatidylinositol glycan anchor biosynthesis class F pseudogene 3 pseudogene pseudogene Approved Xp21.2 Xp21.2 2013-02-25 2015-11-06 2015-11-06 100129049 ENSG00000227592 OTTHUMG00000021318 NG_022588 PGOHUM00000241225 +HGNC:25985 PIGG phosphatidylinositol glycan anchor biosynthesis class G protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "FLJ20265|GPI7|LAS21" phosphatidylinositol glycan, class G Phosphatidylinositol glycan anchor biosynthesis 680 2006-02-08 2015-11-06 2015-11-06 54872 ENSG00000174227 OTTHUMG00000112457 uc003gaj.6 NM_017733 "CCDS3336|CCDS46992|CCDS75080|CCDS75081|CCDS75082|CCDS75083" Q5H8A4 15632136 MGI:3576484 RGD:1560335 PIGG 616918 +HGNC:8964 PIGH phosphatidylinositol glycan anchor biosynthesis class H protein-coding gene gene with protein product Approved 14q24.1 14q24.1 GPI-H phosphatidylinositol N-acetylglucosaminyltransferase subunit phosphatidylinositol glycan, class H Phosphatidylinositol glycan anchor biosynthesis 680 1994-09-06 2015-11-06 2015-11-06 5283 ENSG00000100564 OTTHUMG00000171806 uc001xjr.2 NM_004569 CCDS9784 Q14442 8204896 MGI:99463 RGD:1311438 PIGH 600154 2.4.1.198 +HGNC:45152 PIGHP1 phosphatidylinositol glycan anchor biosynthesis class H pseudogene 1 pseudogene pseudogene Approved 15q22.2 15q22.2 2013-02-25 2015-11-06 2015-11-06 644761 ENSG00000259657 OTTHUMG00000171924 NG_022130 PGOHUM00000247136 +HGNC:8965 PIGK phosphatidylinositol glycan anchor biosynthesis class K protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "hGPI8|GPI8" GPI transamidase subunit phosphatidylinositol glycan, class K Phosphatidylinositol glycan anchor biosynthesis 680 1999-05-17 2015-11-06 2015-11-06 10026 ENSG00000142892 OTTHUMG00000009686 uc001dhk.4 AF022913 NM_005482 CCDS674 Q92643 9356492 MGI:1913863 RGD:1306753 PIGK 605087 C13.005 +HGNC:8966 PIGL phosphatidylinositol glycan anchor biosynthesis class L protein-coding gene gene with protein product Approved 17p11.2 17p11.2 N-acetylglucosaminylphosphatidylinositol deacetylase phosphatidylinositol glycan, class L Phosphatidylinositol glycan anchor biosynthesis 680 1999-04-15 2015-11-06 2015-11-06 9487 ENSG00000108474 OTTHUMG00000059346 uc002gpv.4 AB017165 XM_017025349 CCDS11176 Q9Y2B2 10085243 MGI:2681271 RGD:620437 PIGL 605947 299636 3.5.1.89 +HGNC:18858 PIGM phosphatidylinositol glycan anchor biosynthesis class M protein-coding gene gene with protein product Approved 1q23.2 01q23.2 GPI-MT-I "GPI mannosyltransferase 1|DPM:GlcN-(acyl-)PI mannosyltransferase|dol-P-Man dependent GPI mannosyltransferase" phosphatidylinositol glycan, class M "Dolichyl D-mannosyl phosphate dependent mannosyltransferases|Phosphatidylinositol glycan anchor biosynthesis" "430|680" 2002-07-05 2015-11-06 2015-11-06 93183 ENSG00000143315 OTTHUMG00000024081 uc001fuv.2 AB028127 NM_145167 CCDS1192 Q9H3S5 11226175 MGI:1914806 RGD:71041 PIGM 610273 117818 +HGNC:8967 PIGN phosphatidylinositol glycan anchor biosynthesis class N protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "MDC4|PIG-N" phosphatidylinositol glycan, class N Phosphatidylinositol glycan anchor biosynthesis 680 2000-05-11 2015-11-06 2015-11-06 23556 ENSG00000197563 OTTHUMG00000180098 uc021ulb.3 AF109219 NM_176787 CCDS45879 O95427 "10069808|10574991" MGI:1351629 RGD:1311346 PIGN 606097 280636 +HGNC:23215 PIGO phosphatidylinositol glycan anchor biosynthesis class O protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "DKFZp434M222|FLJ00135" phosphatidylinositol glycan, class O Phosphatidylinositol glycan anchor biosynthesis 680 2003-10-14 2015-11-06 2016-10-05 84720 ENSG00000165282 OTTHUMG00000019854 uc003zwf.4 AB083625 NM_032634 "CCDS6575|CCDS6576" Q8TEQ8 10781593 MGI:1861452 RGD:1309498 PIGO 614730 304648 +HGNC:3046 PIGP phosphatidylinositol glycan anchor biosynthesis class P protein-coding gene gene with protein product Approved 21q22.13 21q22.13 "DCRC|DSRC" phosphatidylinositol-n-acetylglucosaminyltranferase subunit DSCR5 "Down syndrome critical region gene 5|phosphatidylinositol glycan, class P" Phosphatidylinositol glycan anchor biosynthesis 680 2000-05-25 2005-11-10 2015-11-06 2016-10-05 51227 ENSG00000185808 OTTHUMG00000086653 uc002yvx.2 AB037162 NM_153681 "CCDS13649|CCDS13650|CCDS82670" P57054 "10814524|15221505" MGI:1860433 RGD:1307205 PIGP 605938 2.4.1.198 +HGNC:45153 PIGPP1 phosphatidylinositol glycan anchor biosynthesis class P pseudogene 1 pseudogene pseudogene Approved 2p15 02p15 2013-02-25 2015-11-06 2015-11-06 PGOHUM00000240662 +HGNC:45154 PIGPP2 phosphatidylinositol glycan anchor biosynthesis class P pseudogene 2 pseudogene pseudogene Approved 1p31.3 01p31.3 2013-02-25 2015-11-06 2015-11-06 106479056 ENSG00000234204 OTTHUMG00000008913 NG_044547 PGOHUM00000244740 +HGNC:45155 PIGPP3 phosphatidylinositol glycan anchor biosynthesis class P pseudogene 3 pseudogene pseudogene Approved 20q11.22 20q11.22 2013-02-25 2015-11-06 2015-11-06 100128033 ENSG00000228958 OTTHUMG00000032280 NG_030237 PGOHUM00000247644 +HGNC:45156 PIGPP4 phosphatidylinositol glycan anchor biosynthesis class P pseudogene 4 pseudogene pseudogene Approved 18p11.22 18p11.22 2013-02-25 2015-11-06 2015-11-06 106480811 ENSG00000265564 OTTHUMG00000178598 NG_044250 PGOHUM00000234852 +HGNC:14135 PIGQ phosphatidylinositol glycan anchor biosynthesis class Q protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "hGPI1|GPI1" phosphatidylinositol glycan, class Q Phosphatidylinositol glycan anchor biosynthesis 680 2000-12-21 2015-11-06 2015-11-06 9091 ENSG00000007541 OTTHUMG00000168047 uc002cho.4 AB003723 NM_004204 "CCDS10411|CCDS10412" Q9BRB3 "9463366|9729469" MGI:1333114 RGD:1359535 PIGQ 605754 404743 +HGNC:45157 PIGQP1 phosphatidylinositol glycan anchor biosynthesis class Q pseudogene 1 pseudogene pseudogene Approved 1p32.2 01p32.2 2013-02-25 2015-11-06 2015-11-06 106480812 ENSG00000227104 OTTHUMG00000129005 NG_044258 PGOHUM00000244039 +HGNC:8968 PIGR polymeric immunoglobulin receptor protein-coding gene gene with protein product Approved 1q32.1 01q32.1 V-set domain containing 590 1989-06-06 2016-10-05 5284 ENSG00000162896 OTTHUMG00000036581 uc001hez.4 NM_002644 CCDS1474 P01833 MGI:103080 RGD:3328 PIGR 173880 +HGNC:14937 PIGS phosphatidylinositol glycan anchor biosynthesis class S protein-coding gene gene with protein product Approved 17q11.2 17q11.2 GPI transamidase subunit phosphatidylinositol glycan, class S Phosphatidylinositol glycan anchor biosynthesis 680 2001-03-27 2015-11-06 2016-10-05 94005 ENSG00000087111 OTTHUMG00000132604 uc002hbo.3 NM_033198 CCDS11235 Q96S52 MGI:2687325 RGD:1359436 PIGS 610271 +HGNC:14938 PIGT phosphatidylinositol glycan anchor biosynthesis class T protein-coding gene gene with protein product Approved 20q13.12 20q13.12 GPI transamidase subunit phosphatidylinositol glycan, class T Phosphatidylinositol glycan anchor biosynthesis 680 2001-03-27 2015-11-06 2015-11-06 51604 ENSG00000124155 OTTHUMG00000032574 uc002xoh.4 NM_015937 "CCDS13353|CCDS54464|CCDS54465|CCDS54466" Q969N2 15713669 MGI:1926178 RGD:1307156 PIGT 610272 371358 +HGNC:15791 PIGU phosphatidylinositol glycan anchor biosynthesis class U protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "bA346K17.2|GAB1" GPI transamidase subunit CDC91L1 "CDC91 (cell division cycle 91, S. cerevisiae, homolog)-like 1|CDC91 cell division cycle 91-like 1 (S. cerevisiae)" Phosphatidylinositol glycan anchor biosynthesis 680 2001-09-17 2006-11-07 2015-11-06 2015-11-06 128869 ENSG00000101464 OTTHUMG00000032304 uc002xas.4 AL118520 NM_080476 CCDS13239 Q9H490 "12802054|15034568" MGI:3039607 RGD:727825 PIGU 608528 +HGNC:45158 PIGUP1 phosphatidylinositol glycan anchor biosynthesis class U pseudogene 1 pseudogene pseudogene Approved 9q21.12 09q21.12 2013-02-25 2015-11-06 2015-11-06 100422342 ENSG00000224437 OTTHUMG00000019996 NG_023833 PGOHUM00000236205 +HGNC:26031 PIGV phosphatidylinositol glycan anchor biosynthesis class V protein-coding gene gene with protein product Approved 1p36.11 01p36.11 FLJ20477 "GPI mannosyltransferase 2|dol-P-Man dependent GPI mannosyltransferase" phosphatidylinositol glycan, class V "Dolichyl D-mannosyl phosphate dependent mannosyltransferases|Phosphatidylinositol glycan anchor biosynthesis" "430|680" 2005-01-10 2015-11-06 2015-11-06 55650 ENSG00000060642 OTTHUMG00000004005 uc001bmz.4 AK000484 NM_017837 CCDS287 Q9NUD9 15623507 MGI:2442480 RGD:1309526 PIGV 610274 251503 +HGNC:23213 PIGW phosphatidylinositol glycan anchor biosynthesis class W protein-coding gene gene with protein product Approved 17q12 17q12 "Gwt1|FLJ37433" phosphatidylinositol glycan, class W Phosphatidylinositol glycan anchor biosynthesis 680 2003-10-14 2015-11-06 2016-10-05 284098 ENSG00000277161 OTTHUMG00000188438 uc284orh.1 AB097818 NM_178517 CCDS11313 Q7Z7B1 "14517336|12714589" MGI:1917575 RGD:727962 PIGW 610275 400438 +HGNC:26046 PIGX phosphatidylinositol glycan anchor biosynthesis class X protein-coding gene gene with protein product Approved 3q29 03q29 FLJ20522 phosphatidylinositol glycan, class X Phosphatidylinositol glycan anchor biosynthesis 680 2005-01-10 2015-11-06 2016-04-25 54965 ENSG00000163964 OTTHUMG00000155535 uc003fwx.6 AK000529 NM_017861 "CCDS3320|CCDS54701" Q8TBF5 15635094 MGI:1919334 RGD:1307289 PIGX 610276 +HGNC:28213 PIGY phosphatidylinositol glycan anchor biosynthesis class Y protein-coding gene gene with protein product Approved 4q22.1 04q22.1 MGC14156 phosphatidylinositol glycan, class Y Phosphatidylinositol glycan anchor biosynthesis 680 2006-01-31 2015-11-06 2015-11-06 84992 ENSG00000255072 OTTHUMG00000166563 uc062ydg.1 AB206972 NM_032906 "CCDS3631|CCDS54778" Q3MUY2 16162815 MGI:1913518 RGD:2318067 PIGY 610662 449642 +HGNC:30596 PIGZ phosphatidylinositol glycan anchor biosynthesis class Z protein-coding gene gene with protein product Approved 3q29 03q29 "FLJ12768|MGC52163|SMP3" "GPI mannosyltransferase 4|dol-P-Man dependent GPI mannosyltransferase" phosphatidylinositol glycan, class Z "Dolichyl D-mannosyl phosphate dependent mannosyltransferases|Phosphatidylinositol glycan anchor biosynthesis" "430|680" 2006-01-09 2015-11-06 2015-11-06 80235 ENSG00000119227 OTTHUMG00000155522 uc003fxh.5 BC018804 NM_025163 CCDS3324 Q86VD9 15208306 MGI:2443822 RGD:1307107 PIGZ 611671 +HGNC:26075 PIH1D1 PIH1 domain containing 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 FLJ20643 NOP17 2006-03-30 2007-01-31 2007-01-31 2014-11-19 55011 ENSG00000104872 OTTHUMG00000183167 uc061bcw.1 AK000650 NM_017916 CCDS12765 Q9NWS0 12477932 MGI:1916095 RGD:1309809 PIH1D1 611480 +HGNC:25210 PIH1D2 PIH1 domain containing 2 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 2007-01-31 2014-11-19 120379 ENSG00000150773 OTTHUMG00000166925 uc001pmp.5 BC019238 NM_138789 "CCDS8355|CCDS44730" Q8WWB5 12477932 MGI:1919864 RGD:1310503 PIH1D2 +HGNC:28570 PIH1D3 PIH1 domain containing 3 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "MGC35261|NYSAR97" sarcoma antigen NY-SAR-97 CXorf41 chromosome X open reading frame 41 2004-09-08 2012-07-18 2012-07-18 2016-05-13 139212 ENSG00000080572 OTTHUMG00000022160 uc004enc.3 AL136112 NM_173494 CCDS14528 Q9NQM4 "12601173|24421334" MGI:3607720 RGD:1566312 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf41 300933 +HGNC:30034 PIK3AP1 phosphoinositide-3-kinase adaptor protein 1 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "BCAP|FLJ35564" 2004-04-21 2016-10-05 118788 ENSG00000155629 OTTHUMG00000018838 uc001kmq.4 AK092883 NM_152309 CCDS31259 Q6ZUJ8 "1251844|11163197" MGI:1933177 RGD:1307744 PIK3AP1 607942 +HGNC:8971 PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding gene gene with protein product Approved 11p15.1 11p15.1 PI3K-C2alpha "phosphoinositide-3-kinase, class 2, alpha polypeptide|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha" Phosphatidylinositol 3-kinase subunits 831 1998-05-21 2015-11-17 2016-10-05 5286 ENSG00000011405 OTTHUMG00000166036 uc001mmq.6 Y13367 NM_002645 CCDS7824 O00443 9337861 MGI:1203729 RGD:1310389 PIK3C2A 603601 objectId:2150 2.7.1.154 +HGNC:8972 PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "C2-PI3K|PI3K-C2beta" "phosphoinositide-3-kinase, class 2, beta polypeptide|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta" Phosphatidylinositol 3-kinase subunits 831 1998-05-21 2015-11-17 2016-10-05 5287 ENSG00000133056 OTTHUMG00000036101 uc001haw.4 Y11312 NM_002646 CCDS1446 O00750 "9144573|9830063" MGI:2685045 RGD:1306541 PIK3C2B 602838 objectId:2151 2.7.1.154 +HGNC:8973 PIK3C2G phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "phosphoinositide-3-kinase, class 2, gamma polypeptide|phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma" Phosphatidylinositol 3-kinase subunits 831 1998-05-21 2015-11-17 2016-10-05 5288 ENSG00000139144 OTTHUMG00000168841 uc001rdt.4 AJ000008 NM_004570 "CCDS44839|CCDS73452" O75747 9878262 MGI:1203730 RGD:620231 PIK3C2G 609001 objectId:2288 2.7.1.154 +HGNC:8974 PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding gene gene with protein product Approved 18q12.3 18q12.3 Vps34 "phosphoinositide-3-kinase, class 3|phosphatidylinositol 3-kinase, catalytic subunit type 3" Phosphatidylinositol 3-kinase subunits 831 1998-05-21 2015-11-17 2015-11-17 5289 ENSG00000078142 OTTHUMG00000132593 uc002lap.4 Z46973 NM_002647 "CCDS11920|CCDS77180" Q8NEB9 7628435 MGI:2445019 RGD:620899 PIK3C3 602609 objectId:2152 2.7.1.137 +HGNC:8975 PIK3CA phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding gene gene with protein product Approved 3q26.32 03q26.32 PI3K "phosphoinositide-3-kinase, catalytic, alpha polypeptide|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha" Phosphatidylinositol 3-kinase subunits 831 1994-07-15 2015-11-17 2016-10-12 5290 ENSG00000121879 OTTHUMG00000157311 uc003fjk.4 NM_006218 CCDS43171 P42336 1322797 MGI:1206581 RGD:620916 LRG_310|http://www.lrg-sequence.org/LRG/LRG_310 PIK3CA 171834 117820 objectId:2153 2.7.1.153 +HGNC:8976 PIK3CB phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding gene gene with protein product Approved 3q22.3 03q22.3 PIK3C1 "phosphoinositide-3-kinase, catalytic, beta polypeptide|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta" Phosphatidylinositol 3-kinase subunits 831 1992-12-18 2015-11-17 2015-11-17 5291 ENSG00000051382 OTTHUMG00000159893 uc062ohd.1 XM_011512895 CCDS3104 P42338 8246984 MGI:1922019 RGD:620917 PIK3CB 602925 objectId:2154 2.7.1.153 +HGNC:8977 PIK3CD phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta protein-coding gene gene with protein product Approved 1p36.22 01p36.22 p110D "phosphatidylinositol 3-kinase, catalytic, delta polypeptide|phosphoinositide-3-kinase C" "phosphoinositide-3-kinase, catalytic, delta polypeptide|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta" Phosphatidylinositol 3-kinase subunits 831 1997-06-12 2015-11-17 2016-10-12 5293 ENSG00000171608 OTTHUMG00000001450 uc001aqb.5 NM_005026 CCDS104 O00329 "9113989|9455486" MGI:1098211 RGD:1310990 LRG_191|http://www.lrg-sequence.org/LRG/LRG_191 PIK3CD 602839 400623 objectId:2155 2.7.1.153 +HGNC:32346 PIK3CD-AS1 PIK3CD antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.22 01p36.22 C1orf200 chromosome 1 open reading frame 200 2007-08-02 2014-10-08 2014-10-08 2014-11-19 644997 ENSG00000179840 OTTHUMG00000001452 BC016063 NR_027045 Q5SR53 +HGNC:51334 PIK3CD-AS2 PIK3CD antisense RNA 2 non-coding RNA RNA, long non-coding Approved 1p36.22 01p36.22 2014-10-08 2014-10-08 101929074 ENSG00000231789 OTTHUMG00000001449 "AL523099|BI763597|BP394863" NR_126366 +HGNC:8978 PIK3CG phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding gene gene with protein product Approved 7q22.3 07q22.3 "phosphoinositide-3-kinase, catalytic, gamma polypeptide|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma" Phosphatidylinositol 3-kinase subunits 831 1994-07-15 2015-11-17 2016-10-05 5294 ENSG00000105851 OTTHUMG00000157641 uc003vdu.5 XM_005250443 CCDS5739 P48736 MGI:1353576 RGD:1306468 PIK3CG 601232 objectId:2156 2.7.1.153 +HGNC:24942 PIK3IP1 phosphoinositide-3-kinase interacting protein 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "HGFL|MGC17330" 2007-04-13 2015-11-17 113791 ENSG00000100100 OTTHUMG00000151256 uc003akm.4 BC011049 NM_052880 "CCDS13893|CCDS46690" Q96FE7 12477932 MGI:1917016 RGD:1311203 PIK3IP1 +HGNC:41072 PIK3IP1-AS1 PIK3IP1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 22q12.2 22q12.2 2014-08-08 2015-01-09 101929760 ENSG00000228839 OTTHUMG00000151249 BF439736 NR_110542 +HGNC:8979 PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 protein-coding gene gene with protein product Approved 5q13.1 05q13.1 "GRB1|p85-ALPHA|p85" phosphoinositide-3-kinase regulatory subunit alpha phosphoinositide-3-kinase, regulatory subunit 1 (alpha) SH2 domain containing 741 1992-12-08 2015-11-17 2016-10-12 5295 ENSG00000145675 OTTHUMG00000131251 uc003jva.4 M61906 NM_181504 "CCDS3993|CCDS3994|CCDS3995|CCDS56374" P27986 "1314371|18387942" MGI:97583 RGD:3329 "SH2base: Database for pathogenic SH2 domain mutations|http://structure.bmc.lu.se/idbase/SH2base/|LRG_453|http://www.lrg-sequence.org/LRG/LRG_453" PIK3R1 171833 352217 objectId:2503 +HGNC:31392 PIK3R1OS entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:8980 PIK3R2 phosphoinositide-3-kinase regulatory subunit 2 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "P85B|p85" phosphoinositide-3-kinase regulatory subunit beta phosphoinositide-3-kinase, regulatory subunit 2 (beta) SH2 domain containing 741 1992-12-08 2015-11-17 2015-11-17 5296 ENSG00000105647 OTTHUMG00000183383 uc002nia.3 NM_005027 CCDS12371 O00459 1314371 MGI:1098772 RGD:68341 PIK3R2 603157 306122 objectId:2504 +HGNC:8981 PIK3R3 phosphoinositide-3-kinase regulatory subunit 3 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 p55 phosphoinositide-3-kinase regulatory subunit gamma phosphoinositide-3-kinase, regulatory subunit 3 (gamma) SH2 domain containing 741 1998-10-12 2015-11-17 2015-11-17 8503 ENSG00000117461 OTTHUMG00000008096 uc001cpc.5 BC021622 NM_003629 "CCDS529|CCDS76154|CCDS76155" Q92569 9524259 MGI:109277 RGD:621042 PIK3R3 606076 objectId:2505 +HGNC:8982 PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "VPS15|p150" phosphoinositide-3-kinase, regulatory subunit 4 WD repeat domain containing 362 2000-04-11 2015-11-17 2015-11-17 30849 ENSG00000196455 OTTHUMG00000159645 uc003enj.4 Y08991 NM_014602 CCDS3067 Q99570 8999962 MGI:1922919 RGD:1311809 PIK3R4 602610 objectId:2157 +HGNC:30035 PIK3R5 phosphoinositide-3-kinase regulatory subunit 5 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "P101-PI3K|p101" phosphoinositide-3-kinase, regulatory subunit 5 2004-10-13 2015-11-17 2015-11-17 23533 ENSG00000141506 OTTHUMG00000108197 uc010vuz.3 AF128881 NM_014308 "CCDS11147|CCDS73986" Q8WYR1 12507995 MGI:2443588 RGD:1563261 PIK3R5 611317 300201 objectId:2506 +HGNC:27101 PIK3R6 phosphoinositide-3-kinase regulatory subunit 6 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "FLJ34500|HsT41028|p87PIKAP" C17orf38 "chromosome 17 open reading frame 38|phosphoinositide-3-kinase, regulatory subunit 6" 2004-02-23 2008-02-04 2015-11-17 2015-11-17 146850 ENSG00000276231 OTTHUMG00000132861 uc032etf.1 AK091819 NM_001010855 CCDS73985 Q5UE93 16476736 MGI:2144613 RGD:1560850 611462 objectId:2507 +HGNC:23785 PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing protein-coding gene gene with protein product Approved 2q34 02q34 "MGC40423|KIAA0981|PIKfyve|PIP5K|p235|ZFYVE29|FAB1" zinc finger, FYVE domain containing 29 PIP5K3 "phosphatidylinositol-3-phosphate/phosphatidylinositol 5-kinase, type III|phosphoinositide kinase, FYVE finger containing" Zinc fingers FYVE-type 81 2003-12-12 2009-04-17 2016-02-15 2016-02-15 200576 ENSG00000115020 OTTHUMG00000132945 uc002vcz.3 AB023198 NM_015040 "CCDS2382|CCDS33368|CCDS54431" Q9Y2I7 "9858586|12270933" MGI:1335106 RGD:1592067 PIKFYVE 609414 117825 objectId:2857 +HGNC:20396 PILRA paired immunoglobin like type 2 receptor alpha protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FDF03 paired immunoglobin-like type 2 receptor alpha V-set domain containing 590 2003-09-10 2016-03-15 2016-03-15 29992 ENSG00000085514 OTTHUMG00000155248 uc003uuo.1 AF161080 NM_013439 "CCDS5691|CCDS5692|CCDS47660" Q9UKJ1 10660620 MGI:2450529 RGD:6497409 PILRA 605341 +HGNC:18297 PILRB paired immunoglobin-like type 2 receptor beta protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "FDFACT1|FDFACT2" V-set domain containing 590 2003-09-10 2014-11-19 29990 ENSG00000121716 OTTHUMG00000155363 uc064gdi.1 "AF161081|AJ400845" NM_178238 CCDS43622 Q9UKJ0 10660620 "MGI:2450532|MGI:2450535" PILRB 605342 +HGNC:8986 PIM1 Pim-1 proto-oncogene, serine/threonine kinase protein-coding gene gene with protein product Approved 6p21.2 06p21.2 PIM pim-1 oncogene 1986-01-01 2014-06-25 2016-10-05 5292 ENSG00000137193 OTTHUMG00000016426 uc003onk.4 NM_002648 CCDS4830 P11309 MGI:97584 RGD:3330 PIM1 164960 objectId:2158 +HGNC:8987 PIM2 Pim-2 proto-oncogene, serine/threonine kinase protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 pim-2 oncogene 1999-08-26 2014-06-25 2015-09-04 11040 ENSG00000102096 OTTHUMG00000024132 uc004dls.4 U77735 NM_006875 CCDS14312 Q9P1W9 9804974 MGI:97587 RGD:1560759 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PIM2 PIM2 300295 objectId:2159 +HGNC:19310 PIM3 Pim-3 proto-oncogene, serine/threonine kinase protein-coding gene gene with protein product Approved 22q13.33 22q13.33 pim-3 oncogene 2005-01-21 2014-06-25 2016-10-05 415116 ENSG00000198355 OTTHUMG00000150290 uc003bjb.4 BC052239 NM_001001852 CCDS33678 Q86V86 12477932 MGI:1355297 RGD:620462 PIM3 610580 objectId:2160 +HGNC:8988 PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 protein-coding gene gene with protein product Approved 19p13 19p13 dod protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1 Parvulins 920 1996-12-16 2008-03-25 2016-10-12 5300 ENSG00000127445 OTTHUMG00000180388 uc002mml.3 XM_011528068 CCDS12220 Q13526 8606777 MGI:1346036 RGD:1310299 LRG_847|http://www.lrg-sequence.org/LRG/LRG_847 PIN1 601052 +HGNC:8990 PIN1L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-03-25 +HGNC:8989 PIN1P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudogene pseudogene Approved 1p31.1 01p31.1 PIN1L "protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 1-like|peptidylprolyl cis/trans isomerase, NIMA-interacting 1-like (pseudogene)" 1996-12-16 2010-10-28 2010-10-28 2016-10-05 5301 ENSG00000229359 OTTHUMG00000009268 U82382 NR_023916 O15428 9299231 602051 PGOHUM00000244752 +HGNC:8991 PIN3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-11-27 +HGNC:8992 PIN4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "PAR14|PAR17|EPVH" parvulin "protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)|peptidylprolyl cis/trans isomerase NIMA-interacting, 4" Parvulins 920 1998-08-26 2015-03-04 2015-03-04 5303 ENSG00000102309 OTTHUMG00000021811 uc004eam.4 AB009690 NM_006223 "CCDS14417|CCDS55447" Q9Y237 "16522211|17875217" MGI:1916963 RGD:1590326 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PIN4 PIN4 300252 +HGNC:44193 PIN4P1 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudogene pseudogene Approved 15q15.3 15q15.3 protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 pseudogene 1 2012-06-30 2016-06-27 2016-06-27 728758 ENSG00000227973 OTTHUMG00000060476 NR_003571 PGOHUM00000251181 +HGNC:14581 PINK1 PTEN induced putative kinase 1 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 PARK6 Parkinson disease (autosomal recessive) 6 Parkinson disease associated genes 672 2001-02-08 2014-11-18 65018 ENSG00000158828 OTTHUMG00000002841 uc001bdm.3 AB053323 NM_032409 CCDS211 Q9BXM7 "11494141|15349860" MGI:1916193 RGD:1305769 Parkinson's disease Mutation Database|http://grenada.lumc.nl/LOVD2/TPI/home.php?select_db=PINK1 PINK1 608309 117822 objectId:2161 +HGNC:38872 PINK1-AS PINK1 antisense RNA non-coding RNA RNA, long non-coding Approved 1p36.12 01p36.12 "FLJ00387|PINK1AS|naPINK1" PINK1-AS1 "PINK1 antisense RNA 1 (non-protein coding)|PINK1 antisense RNA (non-protein coding)" 2010-08-19 2012-02-02 2012-08-15 2014-09-24 100861548 ENSG00000117242 OTTHUMG00000002840 uc031tru.1 AK090466 NR_046507 17362513 +HGNC:44206 PINLYP phospholipase A2 inhibitor and LY6/PLAUR domain containing protein-coding gene gene with protein product Approved 19q13.31 19q13.31 LY6/PLAUR domain containing 1226 2012-07-20 2012-07-20 390940 ENSG00000234465 OTTHUMG00000175560 uc021uvg.2 NM_001193621 "CCDS58667|CCDS74385" A6NC86 MGI:3615324 RGD:1565787 +HGNC:30046 PINX1 PIN2/TERF1 interacting, telomerase inhibitor 1 protein-coding gene gene with protein product Approved 8p23 08p23 "PinX1|LPTL|LPTS|FLJ20565|MGC8850" "PIN2 interacting protein 1|liver-related putative tumor suppressor" G-patch domain containing 579 2010-04-26 2013-01-28 54984 ENSG00000254093 uc003wth.4 AF418553 NM_017884 "CCDS47801|CCDS64825" Q96BK5 "11003615|11701125" MGI:1919650 RGD:1566025 PINX1 606505 +HGNC:8993 PIP prolactin induced protein protein-coding gene gene with protein product Approved 7q34 07q34 "GCDFP-15|GCDFP15|GPIP4" prolactin-inducible protein prolactin-induced protein 1988-08-19 2016-03-15 2016-03-15 5304 ENSG00000159763 OTTHUMG00000152635 uc003wcf.2 NM_002652 CCDS34768 P12273 "2727805|1955075" MGI:102696 RGD:70946 PIP 176720 +HGNC:8997 PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding gene gene with protein product Approved 10p12.2 10p12.2 "PIP5KIIA|PIP5KIIalpha" PIP5K2A "phosphatidylinositol-4-phosphate 5-kinase, type II, alpha|phosphatidylinositol-5-phosphate 4-kinase, type II, alpha" 1997-07-22 2007-08-14 2016-04-11 2016-04-11 5305 ENSG00000150867 OTTHUMG00000017810 uc001irl.5 S78798 NM_005028 "CCDS7141|CCDS81443" P48426 "7852364|9367159" MGI:1298206 RGD:621708 PIP4K2A 603140 377556 objectId:2858 +HGNC:8998 PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "PIP5KIIB|PIP5KIIbeta" PIP5K2B "phosphatidylinositol-4-phosphate 5-kinase, type II, beta|phosphatidylinositol-5-phosphate 4-kinase, type II, beta" 1998-09-18 2007-08-14 2016-04-11 2016-04-11 8396 ENSG00000276293 uc002hqs.4 U85245 NM_003559 CCDS11329 P78356 "9038203|14691457|9367159" MGI:1934234 RGD:621710 PIP4K2B 603261 objectId:2162 2.7.1.149 +HGNC:23786 PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma protein-coding gene gene with protein product Approved 12q13.3 12q13.3 FLJ22055 PIP5K2C "phosphatidylinositol-4-phosphate 5-kinase, type II, gamma|phosphatidylinositol-5-phosphate 4-kinase, type II, gamma" 2003-12-10 2007-08-14 2016-04-11 2016-04-11 79837 ENSG00000166908 OTTHUMG00000170144 uc001sou.4 AK125526 NM_024779 "CCDS8946|CCDS53808|CCDS55839" Q8TBX8 9367159 MGI:2152214 RGD:621711 PIP4K2C 617104 objectId:2163 +HGNC:8994 PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding gene gene with protein product Approved 1q21.3 01q21.3 phosphatidylinositol-4-phosphate 5-kinase, type I, alpha 1998-09-18 2016-04-11 2016-04-11 8394 ENSG00000143398 OTTHUMG00000012351 uc001exi.4 U78575 NM_003557 "CCDS990|CCDS44219|CCDS44220|CCDS44221|CCDS81374" Q99755 "8955136|10828584" MGI:107929 RGD:1306127 PIP5K1A 603275 objectId:2164 +HGNC:8995 PIP5K1B phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding gene gene with protein product Approved 9q21.11 09q21.11 "STM7|MSS4" phosphatidylinositol-4-phosphate 5-kinase, type I, beta 1998-09-18 2016-04-11 2016-10-05 8395 ENSG00000107242 OTTHUMG00000019976 uc004agu.5 U78579 NM_003558 "CCDS6624|CCDS65063" O14986 "9177790|8841185" MGI:107930 RGD:1310914 PIP5K1B 602745 objectId:2500 +HGNC:8996 PIP5K1C phosphatidylinositol-4-phosphate 5-kinase type 1 gamma protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PIP5Kgamma|KIAA0589|LCCS3" phosphatidylinositol-4-phosphate 5-kinase, type I, gamma 1999-12-14 2016-04-11 2016-04-11 23396 ENSG00000186111 OTTHUMG00000180870 uc002lyj.3 AB011161 NM_012398 "CCDS32872|CCDS56074|CCDS74257" O60331 9535851 MGI:1298224 RGD:1309938 PIP5K1C 606102 160322 objectId:2165 +HGNC:28372 PIP5K1P1 phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudogene pseudogene Approved 6p24.3 06p24.3 MGC26597 phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 1 2010-04-08 2016-04-11 2016-04-11 206426 ENSG00000219294 OTTHUMG00000014219 BC028580 NR_027712.1 12477932 PGOHUM00000243483 +HGNC:38068 PIP5K1P2 phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 2 pseudogene pseudogene Approved 7q36.3 07q36.3 phosphatidylinositol-4-phosphate 5-kinase, type I, pseudogene 2 2010-04-08 2016-04-11 2016-04-11 100129824 ENSG00000229435 OTTHUMG00000151313 NG_023450 PGOHUM00000233661 +HGNC:28711 PIP5KL1 phosphatidylinositol-4-phosphate 5-kinase like 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "bA203J24.5|MGC46424" phosphatidylinositol-4-phosphate 5-kinase-like 1 2004-02-17 2016-03-24 2016-10-05 138429 ENSG00000167103 OTTHUMG00000020719 uc011mao.3 BC042184 NM_173492 "CCDS6885|CCDS48030" Q5T9C9 12477932 MGI:2448520 RGD:1597527 PIP5KL1 612865 +HGNC:17804 PIPOX pipecolic acid and sarcosine oxidase protein-coding gene gene with protein product Approved 17q11.2 17q11.2 LPIPOX L-pipecolic acid oxidase pipecolic acid oxidase 2001-12-13 2016-04-01 2016-10-05 51268 ENSG00000179761 OTTHUMG00000132679 uc002hdr.2 AF134593 NM_016518 CCDS11248 Q9P0Z9 "10772957|10642506" MGI:1197006 RGD:1311347 PIPOX 616713 "1.5.3.1|1.5.3.7" +HGNC:23733 PIPSL PIP5K1A and PSMD4-like, pseudogene pseudogene pseudogene Approved 10q23.33 10q23.33 "PIP5K1A-PSMD4|PIP5K1P3" "PSMD4P2|PIP5K1L1" "proteasome (prosome, macropain) 26S subunit, non-ATPase, 4, pseudogene 2|phosphatidylinositol-4-phosphate 5-kinase, type I-like 1|PIP5K1A and PSMD4-like" 2003-12-04 2007-07-06 2010-10-27 2014-11-18 266971 ENSG00000180764 OTTHUMG00000137480 BC068549 NR_002319 A2A3N6 16344562 +HGNC:30048 PIR pirin protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 pirin (iron-binding nuclear protein) 2004-06-23 2015-11-12 2016-10-05 8544 ENSG00000087842 OTTHUMG00000021176 uc004cwu.5 Y07868 NM_003662 CCDS14167 O00625 9079676 MGI:1916906 RGD:1359212 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PIR PIR 300931 +HGNC:37505 PIRC1 piwi-interacting RNA cluster 1 non-coding RNA RNA, cluster Approved 1 01 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313844 17881367 +HGNC:37506 PIRC2 piwi-interacting RNA cluster 2 non-coding RNA RNA, cluster Approved 1 01 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313924 17881367 +HGNC:37507 PIRC3 piwi-interacting RNA cluster 3 non-coding RNA RNA, cluster Approved 1 01 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313905 17881367 +HGNC:37508 PIRC4 piwi-interacting RNA cluster 4 non-coding RNA RNA, cluster Approved 1 01 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313807 17881367 +HGNC:37509 PIRC5 piwi-interacting RNA cluster 5 non-coding RNA RNA, cluster Approved 1 01 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313845 17881367 +HGNC:37510 PIRC6 piwi-interacting RNA cluster 6 non-coding RNA RNA, cluster Approved 1 01 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313846 17881367 +HGNC:37511 PIRC7 piwi-interacting RNA cluster 7 non-coding RNA RNA, cluster Approved 1 01 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313782 17881367 +HGNC:37512 PIRC8 piwi-interacting RNA cluster 8 non-coding RNA RNA, cluster Approved 1 01 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313915 17881367 +HGNC:37513 PIRC9 piwi-interacting RNA cluster 9 non-coding RNA RNA, cluster Approved 2 02 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313847 17881367 +HGNC:37514 PIRC10 piwi-interacting RNA cluster 10 non-coding RNA RNA, cluster Approved 2 02 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313783 17881367 +HGNC:37515 PIRC11 piwi-interacting RNA cluster 11 non-coding RNA RNA, cluster Approved 3 03 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313897 17881367 +HGNC:37516 PIRC12 piwi-interacting RNA cluster 12 non-coding RNA RNA, cluster Approved 3 03 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313808 17881367 +HGNC:37517 PIRC13 piwi-interacting RNA cluster 13 non-coding RNA RNA, cluster Approved 3 03 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313925 17881367 +HGNC:37518 PIRC14 piwi-interacting RNA cluster 14 non-coding RNA RNA, cluster Approved 3 03 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313784 17881367 +HGNC:37519 PIRC15 piwi-interacting RNA cluster 15 non-coding RNA RNA, cluster Approved 3 03 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313848 17881367 +HGNC:37520 PIRC16 piwi-interacting RNA cluster 16 non-coding RNA RNA, cluster Approved 4 04 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313849 17881367 +HGNC:37521 PIRC17 piwi-interacting RNA cluster 17 non-coding RNA RNA, cluster Approved 4 04 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313809 17881367 +HGNC:37522 PIRC18 piwi-interacting RNA cluster 18 non-coding RNA RNA, cluster Approved 4 04 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313906 17881367 +HGNC:37523 PIRC19 piwi-interacting RNA cluster 19 non-coding RNA RNA, cluster Approved 4 04 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313926 17881367 +HGNC:37524 PIRC20 piwi-interacting RNA cluster 20 non-coding RNA RNA, cluster Approved 5 05 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313785 17881367 +HGNC:37525 PIRC21 piwi-interacting RNA cluster 21 non-coding RNA RNA, cluster Approved 5 05 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313916 17881367 +HGNC:37526 PIRC22 piwi-interacting RNA cluster 22 non-coding RNA RNA, cluster Approved 5 05 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313850 17881367 +HGNC:37527 PIRC23 piwi-interacting RNA cluster 23 non-coding RNA RNA, cluster Approved 5 05 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313786 17881367 +HGNC:37528 PIRC24 piwi-interacting RNA cluster 24 non-coding RNA RNA, cluster Approved 6 06 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313810 17881367 +HGNC:37529 PIRC25 piwi-interacting RNA cluster 25 non-coding RNA RNA, cluster Approved 6 06 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313851 17881367 +HGNC:37530 PIRC26 piwi-interacting RNA cluster 26 non-coding RNA RNA, cluster Approved 6 06 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313852 17881367 +HGNC:37531 PIRC27 piwi-interacting RNA cluster 27 non-coding RNA RNA, cluster Approved 6 06 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313907 17881367 +HGNC:37532 PIRC28 piwi-interacting RNA cluster 28 non-coding RNA RNA, cluster Approved 6 06 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313893 17881367 +HGNC:37533 PIRC29 piwi-interacting RNA cluster 29 non-coding RNA RNA, cluster Approved 7 07 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313927 17881367 +HGNC:37534 PIRC30 piwi-interacting RNA cluster 30 non-coding RNA RNA, cluster Approved 7 07 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313853 17881367 +HGNC:37535 PIRC31 piwi-interacting RNA cluster 31 non-coding RNA RNA, cluster Approved 7 07 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313787 17881367 +HGNC:37536 PIRC32 piwi-interacting RNA cluster 32 non-coding RNA RNA, cluster Approved 7 07 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313811 17881367 +HGNC:37537 PIRC33 piwi-interacting RNA cluster 33 non-coding RNA RNA, cluster Approved 7 07 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313854 17881367 +HGNC:37538 PIRC34 piwi-interacting RNA cluster 34 non-coding RNA RNA, cluster Approved 7 07 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313890 17881367 +HGNC:37539 PIRC35 piwi-interacting RNA cluster 35 non-coding RNA RNA, cluster Approved 8 08 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313855 17881367 +HGNC:37540 PIRC36 piwi-interacting RNA cluster 36 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313928 17881367 +HGNC:37541 PIRC37 piwi-interacting RNA cluster 37 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313812 17881367 +HGNC:37542 PIRC38 piwi-interacting RNA cluster 38 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313788 17881367 +HGNC:37543 PIRC39 piwi-interacting RNA cluster 39 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313856 17881367 +HGNC:37544 PIRC40 piwi-interacting RNA cluster 40 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313898 17881367 +HGNC:37545 PIRC41 piwi-interacting RNA cluster 41 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313917 17881367 +HGNC:37546 PIRC42 piwi-interacting RNA cluster 42 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313789 17881367 +HGNC:37547 PIRC43 piwi-interacting RNA cluster 43 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313857 17881367 +HGNC:37548 PIRC44 piwi-interacting RNA cluster 44 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313908 17881367 +HGNC:37549 PIRC45 piwi-interacting RNA cluster 45 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313813 17881367 +HGNC:37550 PIRC46 piwi-interacting RNA cluster 46 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313858 17881367 +HGNC:37551 PIRC47 piwi-interacting RNA cluster 47 non-coding RNA RNA, cluster Approved 9 09 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313859 17881367 +HGNC:37552 PIRC48 piwi-interacting RNA cluster 48 non-coding RNA RNA, cluster Approved 10 10 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313790 17881367 +HGNC:37553 PIRC49 piwi-interacting RNA cluster 49 non-coding RNA RNA, cluster Approved 10 10 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313929 17881367 +HGNC:37554 PIRC50 piwi-interacting RNA cluster 50 non-coding RNA RNA, cluster Approved 11 11 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313814 17881367 +HGNC:37555 PIRC51 piwi-interacting RNA cluster 51 non-coding RNA RNA, cluster Approved 11 11 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313860 17881367 +HGNC:37556 PIRC52 piwi-interacting RNA cluster 52 non-coding RNA RNA, cluster Approved 11 11 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313791 17881367 +HGNC:37557 PIRC53 piwi-interacting RNA cluster 53 non-coding RNA RNA, cluster Approved 12 12 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313861 17881367 +HGNC:37558 PIRC54 piwi-interacting RNA cluster 54 non-coding RNA RNA, cluster Approved 12 12 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313815 17881367 +HGNC:37559 PIRC55 piwi-interacting RNA cluster 55 non-coding RNA RNA, cluster Approved 12 12 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313792 17881367 +HGNC:37560 PIRC56 piwi-interacting RNA cluster 56 non-coding RNA RNA, cluster Approved 12 12 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313862 17881367 +HGNC:37561 PIRC57 piwi-interacting RNA cluster 57 non-coding RNA RNA, cluster Approved 12 12 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313930 17881367 +HGNC:37562 PIRC58 piwi-interacting RNA cluster 58 non-coding RNA RNA, cluster Approved 13 13 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313918 17881367 +HGNC:37563 PIRC59 piwi-interacting RNA cluster 59 non-coding RNA RNA, cluster Approved 14 14 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313909 17881367 +HGNC:37564 PIRC60 piwi-interacting RNA cluster 60 non-coding RNA RNA, cluster Approved 14 14 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313863 17881367 +HGNC:37565 PIRC61 piwi-interacting RNA cluster 61 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313899 17881367 +HGNC:37566 PIRC62 piwi-interacting RNA cluster 62 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313816 17881367 +HGNC:37567 PIRC63 piwi-interacting RNA cluster 63 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313793 17881367 +HGNC:37568 PIRC64 piwi-interacting RNA cluster 64 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313864 17881367 +HGNC:37569 PIRC65 piwi-interacting RNA cluster 65 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313794 17881367 +HGNC:37570 PIRC66 piwi-interacting RNA cluster 66 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313865 17881367 +HGNC:37571 PIRC67 piwi-interacting RNA cluster 67 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313817 17881367 +HGNC:37572 PIRC68 piwi-interacting RNA cluster 68 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313931 17881367 +HGNC:37573 PIRC69 piwi-interacting RNA cluster 69 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313910 17881367 +HGNC:37574 PIRC70 piwi-interacting RNA cluster 70 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313866 17881367 +HGNC:37575 PIRC71 piwi-interacting RNA cluster 71 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313818 17881367 +HGNC:37576 PIRC72 piwi-interacting RNA cluster 72 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313867 17881367 +HGNC:37577 PIRC73 piwi-interacting RNA cluster 73 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313795 17881367 +HGNC:37578 PIRC74 piwi-interacting RNA cluster 74 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313932 17881367 +HGNC:37579 PIRC75 piwi-interacting RNA cluster 75 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313919 17881367 +HGNC:37580 PIRC76 piwi-interacting RNA cluster 76 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313796 17881367 +HGNC:37581 PIRC77 piwi-interacting RNA cluster 77 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313868 17881367 +HGNC:37582 PIRC78 piwi-interacting RNA cluster 78 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313869 17881367 +HGNC:37583 PIRC79 piwi-interacting RNA cluster 79 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313797 17881367 +HGNC:37584 PIRC80 piwi-interacting RNA cluster 80 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313819 17881367 +HGNC:37585 PIRC81 piwi-interacting RNA cluster 81 non-coding RNA RNA, cluster Approved 15 15 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313870 17881367 +HGNC:37586 PIRC82 piwi-interacting RNA cluster 82 non-coding RNA RNA, cluster Approved 16 16 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313933 17881367 +HGNC:37587 PIRC83 piwi-interacting RNA cluster 83 non-coding RNA RNA, cluster Approved 16 16 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313891 17881367 +HGNC:37588 PIRC84 piwi-interacting RNA cluster 84 non-coding RNA RNA, cluster Approved 16 16 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313820 17881367 +HGNC:37589 PIRC85 piwi-interacting RNA cluster 85 non-coding RNA RNA, cluster Approved 16 16 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313871 17881367 +HGNC:37590 PIRC86 piwi-interacting RNA cluster 86 non-coding RNA RNA, cluster Approved 16 16 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313911 17881367 +HGNC:37591 PIRC87 piwi-interacting RNA cluster 87 non-coding RNA RNA, cluster Approved 16 16 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313872 17881367 +HGNC:37592 PIRC88 piwi-interacting RNA cluster 88 non-coding RNA RNA, cluster Approved 16 16 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313894 17881367 +HGNC:37593 PIRC89 piwi-interacting RNA cluster 89 non-coding RNA RNA, cluster Approved 16 16 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313873 17881367 +HGNC:37594 PIRC90 piwi-interacting RNA cluster 90 non-coding RNA RNA, cluster Approved 17 17 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313798 17881367 +HGNC:37595 PIRC91 piwi-interacting RNA cluster 91 non-coding RNA RNA, cluster Approved 17 17 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313900 17881367 +HGNC:37596 PIRC92 piwi-interacting RNA cluster 92 non-coding RNA RNA, cluster Approved 17 17 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313920 17881367 +HGNC:37597 PIRC93 piwi-interacting RNA cluster 93 non-coding RNA RNA, cluster Approved 17 17 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313934 17881367 +HGNC:37598 PIRC94 piwi-interacting RNA cluster 94 non-coding RNA RNA, cluster Approved 17 17 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313799 17881367 +HGNC:37599 PIRC95 piwi-interacting RNA cluster 95 non-coding RNA RNA, cluster Approved 17 17 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313935 17881367 +HGNC:37600 PIRC96 piwi-interacting RNA cluster 96 non-coding RNA RNA, cluster Approved 18 18 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313800 17881367 +HGNC:37601 PIRC97 piwi-interacting RNA cluster 97 non-coding RNA RNA, cluster Approved 19 19 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313821 17881367 +HGNC:37602 PIRC98 piwi-interacting RNA cluster 98 non-coding RNA RNA, cluster Approved 19 19 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313874 17881367 +HGNC:37603 PIRC99 piwi-interacting RNA cluster 99 non-coding RNA RNA, cluster Approved 19 19 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313875 17881367 +HGNC:37604 PIRC100 piwi-interacting RNA cluster 100 non-coding RNA RNA, cluster Approved 19 19 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313912 17881367 +HGNC:37605 PIRC101 piwi-interacting RNA cluster 101 non-coding RNA RNA, cluster Approved 19 19 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313888 17881367 +HGNC:37606 PIRC102 piwi-interacting RNA cluster 102 non-coding RNA RNA, cluster Approved 19 19 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313876 17881367 +HGNC:37607 PIRC103 piwi-interacting RNA cluster 103 non-coding RNA RNA, cluster Approved 20 20 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313901 17881367 +HGNC:37608 PIRC104 piwi-interacting RNA cluster 104 non-coding RNA RNA, cluster Approved 20 20 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313801 17881367 +HGNC:37609 PIRC105 piwi-interacting RNA cluster 105 non-coding RNA RNA, cluster Approved 21 21 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313936 17881367 +HGNC:37610 PIRC106 piwi-interacting RNA cluster 106 non-coding RNA RNA, cluster Approved 22 22 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313877 17881367 +HGNC:37611 PIRC107 piwi-interacting RNA cluster 107 non-coding RNA RNA, cluster Approved 22 22 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313802 17881367 +HGNC:37612 PIRC108 piwi-interacting RNA cluster 108 non-coding RNA RNA, cluster Approved 22 22 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313878 17881367 +HGNC:37613 PIRC109 piwi-interacting RNA cluster 109 non-coding RNA RNA, cluster Approved 22 22 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313913 17881367 +HGNC:37614 PIRC110 piwi-interacting RNA cluster 110 non-coding RNA RNA, cluster Approved 22 22 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313879 17881367 +HGNC:37615 PIRC111 piwi-interacting RNA cluster 111 non-coding RNA RNA, cluster Approved 22 22 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313937 17881367 +HGNC:37616 PIRC112 piwi-interacting RNA cluster 112 non-coding RNA RNA, cluster Approved 22 22 Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313803 17881367 +HGNC:37617 PIRC113 piwi-interacting RNA cluster 113 non-coding RNA RNA, cluster Approved X X Piwi-interacting RNA clusters 851 2009-11-05 2014-11-19 100313880 17881367 +HGNC:37618 PIRC114 piwi-interacting RNA cluster 114 non-coding RNA RNA, cluster Approved X X Piwi-interacting RNA clusters 851 2009-11-05 2014-11-18 100313881 17881367 +HGNC:37239 PIRT phosphoinositide interacting regulator of transient receptor potential channels protein-coding gene gene with protein product Approved 17p12 17p12 phosphoinositide-interacting regulator of TRPV1 phosphoinositide-interacting regulator of transient receptor potential channels 2010-06-04 2016-04-01 2016-04-01 644139 ENSG00000233670 OTTHUMG00000178234 uc010col.4 AK021549 NM_001101387 CCDS45614 P0C851 18455988 MGI:2443635 RGD:1565284 PIRT 612068 +HGNC:8999 PISD phosphatidylserine decarboxylase protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "dJ858B16.2|PSDC" 1999-10-29 2015-09-04 23761 ENSG00000241878 OTTHUMG00000030252 uc003alk.3 NM_001326412 CCDS13899 Q9UG56 10591208 MGI:2445114 RGD:1596729 PISD 612770 objectId:1277 4.1.1.65 +HGNC:16671 PISRT1 polled intersex syndrome regulated transcript 1 (non-protein coding RNA) non-coding RNA RNA, long non-coding Approved 3q23 03q23 NCRNA00195 non-protein coding RNA 195 polled intersex syndrome regulated transcript 1 homolog (goat) 2006-01-23 2009-08-21 2012-10-16 140464 ENSG00000281473 OTTHUMG00000189533 uc062ohu.1 AW268472 NR_027070 +HGNC:25022 PITHD1 PITH domain containing 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "HT014|TXNL1CL" TXNL1 C-terminal like C1orf128 "chromosome 1 open reading frame 128|PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1" 2005-06-27 2011-02-21 2016-04-06 2016-04-06 57095 ENSG00000057757 OTTHUMG00000002960 uc001bhq.4 NM_020362 CCDS240 Q9GZP4 12477932 MGI:1913443 RGD:1308048 PITHD1 +HGNC:9001 PITPNA phosphatidylinositol transfer protein alpha protein-coding gene gene with protein product Approved 17p13.3 17p13.3 VIB1A PITPN phosphotidylinositol transfer protein Phosphatidylinositol transfer proteins 1151 1994-03-24 2004-09-03 2015-11-20 2015-11-20 5306 ENSG00000174238 OTTHUMG00000177779 uc059zgh.1 M73704 NM_006224 CCDS45563 Q00169 8255295 MGI:99887 RGD:61885 PITPNA 600174 +HGNC:44116 PITPNA-AS1 PITPNA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p13.3 17p13.3 PITPNA antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100306951 ENSG00000236618 OTTHUMG00000132194 uc021tne.2 "HY016432|DB053306|AW978020" NR_028514 +HGNC:9002 PITPNB phosphatidylinositol transfer protein beta protein-coding gene gene with protein product Approved 22q12.1 22q12.1 VIB1B Phosphatidylinositol transfer proteins 1151 1999-10-29 2015-11-20 2015-11-20 23760 ENSG00000180957 OTTHUMG00000150976 uc003adk.5 D30037 XM_011530052 "CCDS13842|CCDS63433|CCDS63432" P48739 10591208 MGI:1927542 RGD:620143 PITPNB 606876 +HGNC:21045 PITPNC1 phosphatidylinositol transfer protein, cytoplasmic 1 protein-coding gene gene with protein product Approved 17q24.3 17q24.3 "RDGBB1|RDGBB|RDGB-BETA" Phosphatidylinositol transfer proteins 1151 2003-05-09 2015-11-20 26207 ENSG00000154217 OTTHUMG00000179602 uc002jgc.5 AF171102 NM_012417 "CCDS58587|CCDS58588" Q9UKF7 10531358 MGI:1919045 RGD:1597047 PITPNC1 605134 +HGNC:9003 PITPNM1 phosphatidylinositol transfer protein membrane associated 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "DRES9|NIR2|RDGB1|RDGBA1|Rd9|RDGB" "PYK2 N-terminal domain-interacting receptor 2|retinal degeneration B alpha 1" PITPNM phosphatidylinositol transfer protein, membrane associated 1 Phosphatidylinositol transfer proteins 1151 1999-06-10 2003-05-16 2016-03-11 2016-10-05 9600 ENSG00000110697 OTTHUMG00000167675 uc001oly.4 X98654 NM_004910 "CCDS31620|CCDS44659" O00562 9680295 MGI:1197524 RGD:1306710 PITPNM1 608794 +HGNC:21044 PITPNM2 phosphatidylinositol transfer protein membrane associated 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "RDGBA2|RDGB2|NIR3" phosphatidylinositol transfer protein, membrane associated 2 Phosphatidylinositol transfer proteins 1151 2003-05-09 2016-03-11 2016-03-11 57605 ENSG00000090975 OTTHUMG00000168845 uc001uej.2 AF334585 NM_020845 "CCDS9242|CCDS73543" Q9BZ72 10022914 MGI:1336192 RGD:1310867 PITPNM2 608920 +HGNC:21043 PITPNM3 PITPNM family member 3 protein-coding gene gene with protein product Approved 17p13.2-p13.1 17p13.2-p13.1 "NIR1|RDGBA3|ACKR6" atypical chemokine receptor 6 CORD5 cone rod dystrophy 5 "Atypical chemokine receptors|Phosphatidylinositol transfer proteins" "1090|1151" 2003-05-09 2013-07-18 2013-07-18 2016-10-11 83394 ENSG00000091622 OTTHUMG00000102039 uc002gdd.5 AF334586 NM_031220 "CCDS11076|CCDS54080" Q9BZ71 10022914 MGI:2685726 RGD:1308200 PITPNM3 608921 160327 +HGNC:17663 PITRM1 pitrilysin metallopeptidase 1 protein-coding gene gene with protein product Approved 10p15.2 10p15.2 "MP1|KIAA1104|hMP1|PreP" "PreP peptidasome|presequence protease, mitochondrial" pitrilysin metalloproteinase 1 2002-09-24 2005-08-17 2016-02-01 10531 ENSG00000107959 OTTHUMG00000017557 uc009xhv.3 AB029027 XM_017015470 "CCDS55699|CCDS55700|CCDS59208" Q5JRX3 "1036083|10470851|16849325" MGI:1916867 RGD:1310998 PITRM1 M16.009 +HGNC:44675 PITRM1-AS1 PITRM1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p15.2 10p15.2 2012-12-03 2012-12-03 100507034 ENSG00000237399 OTTHUMG00000017558 uc001igv.3 BC050332 NR_038284 +HGNC:9004 PITX1 paired like homeodomain 1 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "PTX1|POTX" BFT "paired-like homeodomain transcription factor 1|paired-like homeodomain 1" PRD class homeoboxes and pseudogenes 521 1998-02-27 2016-01-27 2016-01-27 5307 ENSG00000069011 OTTHUMG00000149983 uc010jea.4 AF009648 NM_002653 CCDS4182 P78337 "9337397|9070926" MGI:107374 RGD:69253 PITX1 602149 8491 201502 +HGNC:9005 PITX2 paired like homeodomain 2 protein-coding gene gene with protein product Approved 4q25 04q25 "IGDS|RS|Brx1|Otlx2|ARP1" "IRID2|IHG2|RIEG|RIEG1|RGS" "paired-like homeodomain transcription factor 2|paired-like homeodomain 2" PRD class homeoboxes and pseudogenes 521 1992-10-05 2016-01-27 2016-01-27 5308 ENSG00000164093 OTTHUMG00000132837 uc003iac.4 U69961 XM_011532027 "CCDS3692|CCDS3693|CCDS3694" Q99697 "9539779|7581385" MGI:109340 RGD:3331 PITX2 601542 8492 117832 +HGNC:9006 PITX3 paired like homeodomain 3 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 ASMD "paired-like homeodomain transcription factor 3|anterior segment mesenchymal dysgenesis|paired-like homeodomain 3" PRD class homeoboxes and pseudogenes 521 1998-06-04 2016-01-27 2016-01-27 5309 ENSG00000107859 OTTHUMG00000018952 uc001kuu.2 NM_005029 CCDS7532 O75364 9620774 MGI:1100498 RGD:3332 PITX3 602669 8414 117844 +HGNC:9007 PIWIL1 piwi like RNA-mediated gene silencing 1 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "PIWI|HIWI|CT80.1" "piwi (Drosophila)-like 1|piwi-like 1 (Drosophila)" Argonaute/PIWI family 408 2000-02-11 2016-04-19 2016-04-19 9271 ENSG00000125207 OTTHUMG00000168382 uc001uik.4 AF104260 XM_011539002 CCDS9268 Q96J94 "9851978|12906857" MGI:1928897 RGD:1306980 PIWIL1 605571 +HGNC:17644 PIWIL2 piwi like RNA-mediated gene silencing 2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "HILI|FLJ10351|Mili|CT80" "Hiwi-like|cancer/testis antigen 80" piwi-like 2 (Drosophila) Argonaute/PIWI family 408 2002-04-26 2016-04-19 2016-10-05 55124 ENSG00000197181 OTTHUMG00000097767 uc003xbn.3 AK001213 XM_005273550 "CCDS6029|CCDS83261" Q8TC59 "11279525|12906857" MGI:1930036 RGD:1306964 PIWIL2 610312 +HGNC:18443 PIWIL3 piwi like RNA-mediated gene silencing 3 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 HIWI3 piwi-like 3 (Drosophila) Argonaute/PIWI family 408 2002-04-26 2016-04-19 2016-04-19 440822 ENSG00000184571 OTTHUMG00000150788 uc003abd.3 AB079368 NM_001008496 CCDS33623 Q7Z3Z3 12906857 PIWIL3 610314 +HGNC:18444 PIWIL4 piwi like RNA-mediated gene silencing 4 protein-coding gene gene with protein product Approved 11q21 11q21 "FLJ36156|HIWI2|Miwi2" piwi-like 4 (Drosophila) Argonaute/PIWI family 408 2002-04-26 2016-04-19 2016-04-19 143689 ENSG00000134627 OTTHUMG00000167811 uc001pfa.3 AB079366 NM_152431 CCDS31656 Q7Z3Z4 12906857 MGI:3041167 RGD:1311015 PIWIL4 610315 +HGNC:16648 PJA1 praja ring finger ubiquitin ligase 1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "FLJ11830|RNF70" "praja 1|praja ring finger 1|praja ring finger 1, E3 ubiquitin protein ligase" Ring finger proteins 58 2001-12-07 2016-01-27 2016-01-27 64219 ENSG00000181191 OTTHUMG00000021753 uc004dxh.4 AK021892 NM_145119 "CCDS14392|CCDS14393|CCDS35316" Q8NG27 12036302 MGI:1101765 RGD:1591532 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PJA1 PJA1 300420 +HGNC:17481 PJA2 praja ring finger ubiquitin ligase 2 protein-coding gene gene with protein product Approved 5q21.3 05q21.3 "KIAA0438|Neurodap1" RNF131 "ring finger protein 131|praja ring finger 2|praja ring finger 2, E3 ubiquitin protein ligase" Ring finger proteins 58 2003-05-21 2003-06-05 2016-01-27 2016-10-05 9867 ENSG00000198961 OTTHUMG00000128750 uc003kos.5 AB007898 NM_014819 CCDS4099 O43164 MGI:2159342 RGD:620273 PJA2 +HGNC:9008 PKD1 polycystin 1, transient receptor potential channel interacting protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "PBP|Pc-1|TRPP1" "polycystin 1|transient receptor potential cation channel, subfamily P, member 1" polycystic kidney disease 1 (autosomal dominant) C-type lectin domain containing 1298 2001-06-22 2016-01-28 2016-02-17 5310 ENSG00000008710 OTTHUMG00000155795 uc002cos.1 L33243 XM_011522528 "CCDS32369|CCDS45385" P98161 19556541 MGI:97603 RGD:3333 Autosomal Dominant Polycystic Kidney Disease (ADPKD)|http://grenada.lumc.nl/LOVD2/PKD/home.php?select_db=PKD1 PKD1 601313 117846 P02.038 +HGNC:18053 PKD1L1 polycystin 1 like 1, transient receptor potential channel interacting protein-coding gene gene with protein product Approved 7p12.3 07p12.3 PRO19563 polycystin-1L1 polycystic kidney disease 1 like 1 2002-03-21 2016-01-28 2016-01-28 168507 ENSG00000158683 OTTHUMG00000155649 uc003tny.3 AB061683 NM_138295 CCDS34633 Q8TDX9 "11863367|24336289" MGI:2156538 RGD:1564724 PKD1L1 609721 +HGNC:21715 PKD1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 16q23.2 16q23.2 KIAA1879 polycystic kidney disease 1-like 2 C-type lectin domain containing 1298 2003-08-05 2016-01-28 2016-01-28 114780 ENSG00000166473 OTTHUMG00000166126 uc032egc.1 AY164483 NM_052892 CCDS61999 Q7Z442 12782129 MGI:2664668 RGD:1588631 PKD1L2 607894 +HGNC:21716 PKD1L3 polycystin 1 like 3, transient receptor potential channel interacting protein-coding gene gene with protein product Approved 16q22.2 16q22.2 polycystic kidney disease 1-like 3 C-type lectin domain containing 1298 2003-08-05 2016-01-28 2016-01-28 342372 ENSG00000277481 OTTHUMG00000166114 uc059wxm.1 AY164485 NM_181536 CCDS73912 Q7Z443 "12782129|20538909" MGI:2664670 RGD:2324490 PKD1L3 607895 +HGNC:30065 PKD1P1 polycystin 1, transient receptor potential channel interacting pseudogene 1 pseudogene pseudogene Approved 16p13.11 16p13.11 polycystic kidney disease 1 (autosomal dominant) pseudogene 1 2004-05-19 2016-01-28 2016-10-05 339044 ENSG00000244257 OTTHUMG00000133625 NR_036447 "10493829|11414761" PGOHUM00000250674 +HGNC:30066 PKD1P2 polycystin 1, transient receptor potential channel interacting pseudogene 2 pseudogene pseudogene Approved 16p13.11 16p13.11 polycystic kidney disease 1 (autosomal dominant) pseudogene 2 2004-05-19 2016-01-28 2016-01-28 283955 NG_002795 "10493829|11414761" PGOHUM00000248996 +HGNC:30067 PKD1P3 polycystin 1, transient receptor potential channel interacting pseudogene 3 pseudogene pseudogene Approved 16p13 16p13 polycystic kidney disease 1 (autosomal dominant) pseudogene 3 2004-05-19 2016-01-28 2016-01-28 339039 NG_002796 "11414761|10493829" PGOHUM00000248991 +HGNC:30068 PKD1P4 polycystin 1, transient receptor potential channel interacting pseudogene 4 pseudogene pseudogene Approved 16p13 16p13 polycystic kidney disease 1 (autosomal dominant) pseudogene 4 2004-05-19 2016-01-28 2016-01-28 353512 NG_002800 "10493829|8004675" +HGNC:30069 PKD1P5 polycystin 1, transient receptor potential channel interacting pseudogene 5 pseudogene pseudogene Approved 16p12.3 16p12.3 polycystic kidney disease 1 (autosomal dominant) pseudogene 5 2004-05-19 2016-01-28 2016-01-28 348156 ENSG00000254681 OTTHUMG00000166287 NG_002798 "8004675|10493829" PGOHUM00000248747 +HGNC:30070 PKD1P6 polycystin 1, transient receptor potential channel interacting pseudogene 6 pseudogene pseudogene Approved 16p13.11 16p13.11 polycystic kidney disease 1 (autosomal dominant) pseudogene 6 2004-05-19 2016-01-28 2016-01-28 353511 ENSG00000250251 OTTHUMG00000156664 uc059rdq.1 NG_002799 "8004675|10493829" +HGNC:9009 PKD2 polycystin 2, transient receptor potential cation channel protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "PKD4|PC2|Pc-2|TRPP2" transient receptor potential cation channel, subfamily P, member 2 polycystic kidney disease 2 (autosomal dominant) "Transient receptor potential cation channels|EF-hand domain containing" "249|863" 1988-08-07 2016-01-28 2016-01-28 5311 ENSG00000118762 OTTHUMG00000160982 uc003hre.4 U50928 NM_000297 CCDS3627 Q13563 8298643 MGI:1099818 RGD:1559992 Autosomal Dominant Polycystic Kidney Disease (ADPKD)|http://grenada.lumc.nl/LOVD2/PKD/home.php?select_db=PKD2 PKD2 173910 117849 objectId:504 +HGNC:9011 PKD2L1 polycystin 2 like 1, transient receptor potential cation channel protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "PCL|TRPP3" transient receptor potential cation channel, subfamily P, member 3 "PKD2L|PKDL" polycystic kidney disease 2-like 1 Transient receptor potential cation channels 249 1999-01-21 2016-01-28 2016-01-28 9033 ENSG00000107593 OTTHUMG00000018910 uc001kqx.2 AF094827 NM_016112 CCDS7492 Q9P0L9 "9878261|9748274" MGI:1352448 RGD:1306261 PKD2L1 604532 objectId:505 +HGNC:9012 PKD2L2 polycystin 2 like 2, transient receptor potential cation channel protein-coding gene gene with protein product Approved 5q31.2 05q31.2 TRPP5 transient receptor potential cation channel subfamily P member 5 polycystic kidney disease 2-like 2 Transient receptor potential cation channels 249 2000-01-04 2016-01-28 2016-10-05 27039 ENSG00000078795 OTTHUMG00000163306 uc003lbw.2 AF118125 NM_014386 "CCDS43367|CCDS58971|CCDS58972|CCDS78062" Q9NZM6 10602361 MGI:1858231 RGD:1310272 PKD2L2 604669 objectId:506 +HGNC:9013 PKD3 polycystic kidney disease 3 (autosomal dominant) phenotype phenotype only Approved 2p 02p 1991-08-13 1998-06-11 5312 1974020 +HGNC:25123 PKDCC protein kinase domain containing, cytoplasmic protein-coding gene gene with protein product Approved 2p21 02p21 "SgK493|Vlk" vertebrate lonesome kinase protein kinase domain containing, cytoplasmic homolog (mouse) 2009-11-06 2012-12-07 2014-11-19 91461 ENSG00000162878 OTTHUMG00000152303 uc002rsg.4 NM_138370 CCDS33186 Q504Y2 "19097194|19465597" MGI:2147077 RGD:1311939 PKDCC 614150 objectId:2166 +HGNC:9015 PKDREJ polycystin (PKD) family receptor for egg jelly protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "polycystic kidney disease (polycystin) and REJ (sperm receptor for egg jelly, sea urchin homolog)-like|polycystic kidney disease (polycystin) and REJ (sperm receptor for egg jelly homolog, sea urchin)-like|polycystic kidney disease (polycystin) and REJ homolog (sperm receptor for egg jelly homolog, sea urchin)" 1999-06-09 2013-07-31 2014-11-18 10343 ENSG00000130943 OTTHUMG00000150493 uc003bhh.4 AF116458 NM_006071 CCDS14073 Q9NTG1 "9949214|10591208" MGI:1338786 RGD:1306587 PKDREJ 604670 +HGNC:9016 PKHD1 polycystic kidney and hepatic disease 1 (autosomal recessive) protein-coding gene gene with protein product Approved 6p12.3-p12.2 06p12.3-p12.2 "ARPKD|FCYT" "tigmin|polyductin|fibrocystin" TIGM1 TIG multiple domains 1 1994-12-15 2003-04-16 2016-10-11 5314 ENSG00000170927 OTTHUMG00000014841 uc003pah.2 AF480064 NM_138694 "CCDS4935|CCDS4936" P08F94 9503014 MGI:2155808 RGD:1308476 Autosomal Recessive Polycystic Kidney Disease|http://www.humgen.rwth-aachen.de/ PKHD1 606702 117853 +HGNC:20313 PKHD1L1 polycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 protein-coding gene gene with protein product Approved 8q23.1-q23.2 08q23.1-q23.2 2003-03-28 2016-10-11 93035 ENSG00000205038 OTTHUMG00000164934 uc003yne.4 AY219181 NM_177531 CCDS47911 Q86WI1 12620974 MGI:2183153 RGD:1310406 PKHD1L1 607843 +HGNC:9017 PKIA protein kinase (cAMP-dependent, catalytic) inhibitor alpha protein-coding gene gene with protein product Approved 8q21.13 08q21.13 PRKACN1 1999-08-27 2015-04-24 5569 ENSG00000171033 OTTHUMG00000164618 uc003yba.4 S76965 NM_006823 CCDS6222 P61925 1770951 MGI:104747 RGD:621021 PKIA 606059 +HGNC:51659 PKIA-AS1 PKIA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q21.13 08q21.13 2015-04-24 2015-04-24 101927003 ENSG00000254266 OTTHUMG00000164617 BC036404 NR_125389 +HGNC:9018 PKIB protein kinase (cAMP-dependent, catalytic) inhibitor beta protein-coding gene gene with protein product Approved 6q22.31 06q22.31 PRKACN2 1999-08-27 2016-10-05 5570 ENSG00000135549 OTTHUMG00000015488 uc003pyz.4 XM_011535930 "CCDS5126|CCDS59033" Q9C010 10880337 MGI:101937 RGD:3335 PKIB 606914 +HGNC:9019 PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma protein-coding gene gene with protein product Approved 20q13.12 20q13.12 1999-09-07 2016-10-05 11142 ENSG00000168734 OTTHUMG00000033065 uc002xmi.5 AB019517 XM_017027614 CCDS13334 Q9Y2B9 10880337 MGI:1343086 RGD:628775 PKIG 604932 +HGNC:9020 PKLR pyruvate kinase, liver and RBC protein-coding gene gene with protein product Approved 1q22 01q22 2001-06-22 2014-11-19 5313 ENSG00000143627 OTTHUMG00000035875 uc001fkb.5 "BC025737|M15465" NM_000298 "CCDS1109|CCDS44240" P30613 3566732 MGI:97604 RGD:3336 PKLR 609712 117861 2.7.1.40 +HGNC:9021 PKM pyruvate kinase, muscle protein-coding gene gene with protein product Approved 15q23 15q23 "THBP1|OIP3|PK3" PKM2 2001-06-22 2012-05-23 2014-11-19 5315 ENSG00000067225 OTTHUMG00000172709 uc002aty.3 M23725 XM_011521670 "CCDS32284|CCDS32285|CCDS55972|CCDS73752" P14618 2040271 MGI:97591 RGD:3337 PKM 179050 2.7.1.40 +HGNC:44243 PKMP1 pyruvate kinase, muscle pseudogene 1 pseudogene pseudogene Approved 1p13.2 01p13.2 2012-07-25 2012-07-25 643586 ENSG00000236480 OTTHUMG00000011897 NG_022800 PGOHUM00000259573 +HGNC:44244 PKMP2 pyruvate kinase, muscle pseudogene 2 pseudogene pseudogene Approved Xq12 Xq12 2012-07-25 2012-07-25 402408 ENSG00000235892 OTTHUMG00000021735 NG_022667 PGOHUM00000260968 +HGNC:44245 PKMP3 pyruvate kinase, muscle pseudogene 3 pseudogene pseudogene Approved 6q14.3 06q14.3 2012-07-25 2012-07-25 100419758 ENSG00000220563 OTTHUMG00000015143 NG_025841 PGOHUM00000243274 +HGNC:44246 PKMP4 pyruvate kinase, muscle pseudogene 4 pseudogene pseudogene Approved 8q21.11 08q21.11 2012-07-25 2012-07-25 106480443 ENSG00000254023 OTTHUMG00000164549 NG_043399 PGOHUM00000249718 +HGNC:44247 PKMP5 pyruvate kinase, muscle pseudogene 5 pseudogene pseudogene Approved 6p25.1 06p25.1 2012-07-25 2012-07-25 442156 ENSG00000215057 OTTHUMG00000014183 NG_022342 PGOHUM00000262463 +HGNC:29650 PKMYT1 protein kinase, membrane associated tyrosine/threonine 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "MYT1|PPP1R126" "membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase|protein phosphatase 1, regulatory subunit 126" Protein phosphatase 1 regulatory subunits 694 2005-01-20 2014-11-19 9088 ENSG00000127564 OTTHUMG00000128975 uc059psg.1 AK097642 NM_004203 "CCDS10486|CCDS45391|CCDS58414|CCDS58415" Q99640 "9001210|12606722" MGI:2137630 RGD:1305434 PKMYT1 602474 objectId:2167 +HGNC:9405 PKN1 protein kinase N1 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "DBK|PRK1|PKN|MGC46204|PAK1" PRKCL1 protein kinase C-like 1 C2 domain containing protein kinases 835 1997-10-10 2004-07-01 2004-07-01 2014-11-19 5585 ENSG00000123143 OTTHUMG00000039611 uc002myp.4 S75546 "NM_002741|NM_213560" "CCDS42513|CCDS42514" Q16512 9570957 MGI:108022 RGD:69308 PKN1 601032 objectId:1520 +HGNC:9406 PKN2 protein kinase N2 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "PRK2|Pak-2|STK7" cardiolipin-activated protein kinase Pak2 PRKCL2 protein kinase C-like 2 C2 domain containing protein kinases 835 1997-10-10 2004-07-01 2004-07-01 2016-10-05 5586 ENSG00000065243 OTTHUMG00000010074 uc001dmn.4 U33052 NM_006256 "CCDS714|CCDS81350" Q16513 "7988719|7851406" MGI:109211 RGD:620146 PKN2 602549 objectId:1521 +HGNC:50597 PKN2-AS1 PKN2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p22.2 01p22.2 2014-05-22 2014-05-22 101927891 ENSG00000237505 OTTHUMG00000010024 NR_110682 +HGNC:17999 PKN3 protein kinase N3 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "PKNbeta|UTDP4-1" "C2 domain containing protein kinases|Minor histocompatibility antigens" "835|870" 2004-04-23 2016-10-05 29941 ENSG00000160447 OTTHUMG00000020757 uc004bvw.4 AB019692 NM_013355 CCDS6908 Q6P5Z2 10441506 MGI:2388285 RGD:1305921 PKN3 610714 objectId:1522 +HGNC:9022 PKNOX1 PBX/knotted 1 homeobox 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 PREP1 TALE class homeoboxes and pseudogenes 526 1997-03-19 2015-09-04 5316 ENSG00000160199 OTTHUMG00000086833 uc002zcq.3 NM_001320694 "CCDS13692|CCDS68211" P55347 9479508 MGI:1201409 RGD:1305003 PKNOX1 602100 8493 +HGNC:16714 PKNOX2 PBX/knotted 1 homeobox 2 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 TALE class homeoboxes and pseudogenes 526 2001-10-01 2015-09-04 63876 ENSG00000165495 OTTHUMG00000165884 uc001qbu.4 AK023136 XM_017018110 CCDS41730 Q96KN3 11549286 MGI:2445415 RGD:1590611 PKNOX2 613066 8546 +HGNC:50690 PKNOX2-AS1 PKNOX2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 11q24.2 11q24.2 2014-06-05 2014-06-13 103695364 ENSG00000254880 OTTHUMG00000165883 BP872841 NR_125759 +HGNC:9023 PKP1 plakophilin 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 B6P ectodermal dysplasia/skin fragility syndrome plakophilin 1 (ectodermal dysplasia/skin fragility syndrome) Armadillo repeat containing 409 1996-10-18 2014-06-18 2016-10-05 5317 ENSG00000081277 OTTHUMG00000035729 uc001gwe.3 X79293 NM_000299 "CCDS30966|CCDS30967" Q13835 9272178 MGI:1328359 RGD:1307472 PKP1 601975 117868 +HGNC:9024 PKP2 plakophilin 2 protein-coding gene gene with protein product Approved 12p11 12p11 Armadillo repeat containing 409 1997-08-28 2016-10-12 5318 ENSG00000057294 OTTHUMG00000169500 uc001rlk.5 X97675 NM_004572 "CCDS8731|CCDS31771" Q99959 8922383 MGI:1914701 RGD:1306533 "ARVD/C Genetic Variants Database|http://grenada.lumc.nl/LOVD2/ARVC/home.php?select_db=PKP2|LRG_398|http://www.lrg-sequence.org/LRG/LRG_398" PKP2 602861 117871 +HGNC:13413 PKP2P1 plakophilin 2 pseudogene 1 pseudogene pseudogene Approved 12p13 12p13 2003-10-14 2003-10-14 82500 NG_000936 10828611 +HGNC:9025 PKP3 plakophilin 3 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 Armadillo repeat containing 409 1998-10-14 2016-10-05 11187 ENSG00000184363 OTTHUMG00000119068 uc001lpc.3 Z98265 NM_007183 CCDS7695 Q9Y446 10374265 MGI:1891830 RGD:1309133 PKP3 605561 +HGNC:9026 PKP4 plakophilin 4 protein-coding gene gene with protein product Approved 2q24.1 02q24.1 p0071 Armadillo repeat containing 409 1998-10-14 2014-11-19 8502 ENSG00000144283 OTTHUMG00000153969 uc002tzv.4 X81889 XM_017005122 "CCDS33305|CCDS33306" Q99569 "9342840|8937994" MGI:109281 RGD:1307840 PKP4 604276 +HGNC:42661 PKP4P1 plakophilin 4 pseudogene 1 pseudogene pseudogene Approved 2q34 02q34 2011-08-12 2011-08-12 402116 ENSG00000229670 OTTHUMG00000155516 NG_021602 PGOHUM00000241096 +HGNC:17661 PLA1A phospholipase A1 member A protein-coding gene gene with protein product Approved 3q13.33 03q13.33 ps-PLA1 Phospholipases 467 2002-11-28 2016-10-05 51365 ENSG00000144837 OTTHUMG00000159425 uc003ecu.4 AF035268 XM_017006572 "CCDS2991|CCDS56268|CCDS56269|CCDS77795" Q53H76 10196188 MGI:1934677 RGD:621261 PLA1A 607460 +HGNC:9030 PLA2G1B phospholipase A2 group IB protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "PLA2|PPLA2|PLA2A" phospholipase A2, group IB (pancreas) Phospholipases 467 1986-01-01 2015-11-18 2015-11-18 5319 ENSG00000170890 OTTHUMG00000169343 uc001tyd.3 NM_000928 CCDS9195 P04054 8175726 MGI:101842 RGD:61949 PLA2G1B 172410 objectId:1416 3.1.1.4 +HGNC:9031 PLA2G2A phospholipase A2 group IIA protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "PLA2B|PLA2L" phospholipase A2, group IIA (platelets, synovial fluid) Phospholipases 467 1989-04-24 2015-11-18 2016-10-05 5320 ENSG00000188257 OTTHUMG00000002699 uc001bcv.4 BC005919 NM_000300 CCDS201 P14555 8838795 MGI:104642 RGD:620857 PLA2G2A 172411 objectId:1417 3.1.1.4 +HGNC:9032 PLA2G2C phospholipase A2 group IIC protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "phospholipase A2, group IIC (possible pseudogene)|phospholipase A2, group IIC" Phospholipases 467 1998-09-07 2015-11-18 2015-11-18 391013 ENSG00000187980 OTTHUMG00000002705 uc009vpq.1 NM_001105572 Q5R387 8838795 MGI:106638 RGD:3340 PLA2G2C +HGNC:9033 PLA2G2D phospholipase A2 group IID protein-coding gene gene with protein product Approved 1p36.12 01p36.12 sPLA2S phospholipase A2, group IID Phospholipases 467 1999-11-19 2015-11-18 2015-11-18 26279 ENSG00000117215 OTTHUMG00000002701 uc001bcz.5 AF112982 NM_012400 "CCDS203|CCDS72721" Q9UNK4 10455175 MGI:1341796 RGD:1309862 PLA2G2D 605630 objectId:1418 3.1.1.4 +HGNC:13414 PLA2G2E phospholipase A2 group IIE protein-coding gene gene with protein product Approved 1p36.13 01p36.13 phospholipase A2, group IIE Phospholipases 467 2004-01-13 2015-11-18 2015-11-18 30814 ENSG00000188784 OTTHUMG00000002702 uc001bct.2 AF189279 NM_014589 CCDS200 Q9NZK7 "10681567|11922621" MGI:1349660 RGD:1309611 PLA2G2E objectId:1419 3.1.1.4 +HGNC:30040 PLA2G2F phospholipase A2 group IIF protein-coding gene gene with protein product Approved 1p36.12 01p36.12 phospholipase A2, group IIF Phospholipases 467 2004-01-13 2015-11-18 2016-10-05 64600 ENSG00000158786 OTTHUMG00000002704 uc009vpp.2 AL158172 NM_022819 CCDS204 Q9BZM2 11112443 MGI:1349661 RGD:1597305 PLA2G2F 616793 objectId:1420 3.1.1.4 +HGNC:17934 PLA2G3 phospholipase A2 group III protein-coding gene gene with protein product Approved 22q12.2 22q12.2 GIII-SPLA2 phospholipase A2, group III Phospholipases 467 2002-04-29 2015-11-18 2015-11-18 50487 ENSG00000100078 OTTHUMG00000151255 uc003aka.4 AF220490 NM_015715 CCDS13889 Q9NZ20 10713052 MGI:2444945 RGD:1305323 PLA2G3 611651 objectId:1421 3.1.1.4 +HGNC:9035 PLA2G4A phospholipase A2 group IVA protein-coding gene gene with protein product Approved 1q31.1 01q31.1 cPLA2-alpha PLA2G4 phospholipase A2, group IVA (cytosolic, calcium-dependent) "Phospholipases|C2 domain containing phospholipases" "467|832" 1994-11-30 2015-11-18 2016-10-12 5321 ENSG00000116711 OTTHUMG00000035512 uc001gsc.4 M72393 NM_024420 CCDS1372 P47712 8175726 MGI:1195256 RGD:67366 LRG_596|http://www.lrg-sequence.org/LRG/LRG_596 PLA2G4A 600522 objectId:1424 "3.1.1.4|3.1.1.5" +HGNC:9036 PLA2G4B phospholipase A2 group IVB protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "cPLA2-beta|HsT16992" phospholipase A2, group IVB (cytosolic) "Phospholipases|C2 domain containing phospholipases" "467|832" 1998-11-20 2015-11-18 2016-10-05 100137049 ENSG00000243708 OTTHUMG00000156809 uc059iba.1 AF065215 NM_001114633 CCDS45241 P0C869 9705332 MGI:2384819 RGD:1308658 606088 objectId:1425 3.1.1.4 +HGNC:9037 PLA2G4C phospholipase A2 group IVC protein-coding gene gene with protein product Approved 19q13.33 19q13.33 cPLA2-gamma phospholipase A2, group IVC (cytosolic, calcium-independent) Phospholipases 467 1998-11-20 2015-11-18 2016-10-05 8605 ENSG00000105499 OTTHUMG00000183185 uc002phx.4 AF065214 XM_011527431 "CCDS12710|CCDS54286|CCDS59403" Q9UP65 9705332 MGI:1196403 RGD:1594658 PLA2G4C 603602 objectId:1426 3.1.1.4 +HGNC:51585 PLA2G4C-AS1 PLA2G4C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.33 19q13.33 2015-03-11 2015-03-11 106144526 ENSG00000269420 OTTHUMG00000183186 "AA318256|BU736556|EL953961" NR_132363 +HGNC:30038 PLA2G4D phospholipase A2 group IVD protein-coding gene gene with protein product Approved 15q14 15q14 cPLA2delta phospholipase A2, group IVD (cytosolic) "Phospholipases|C2 domain containing phospholipases" "467|832" 2004-02-04 2015-11-18 2015-11-18 283748 ENSG00000159337 OTTHUMG00000172587 uc001zox.3 AB090876 NM_178034 CCDS32203 Q86XP0 14709560 MGI:1925640 RGD:1593372 PLA2G4D 612864 objectId:1427 3.1.1.4 +HGNC:24791 PLA2G4E phospholipase A2 group IVE protein-coding gene gene with protein product Approved 15q15.1 15q15.1 FLJ45651 phospholipase A2, group IVE "Phospholipases|C2 domain containing phospholipases" "467|832" 2005-11-04 2015-11-18 2015-11-18 123745 ENSG00000188089 OTTHUMG00000130371 uc021sjp.2 NM_198442 CCDS55962 Q3MJ16 15866882 MGI:1919144 RGD:1310595 PLA2G4E objectId:1428 3.1.1.4 +HGNC:51419 PLA2G4E-AS1 PLA2G4E antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q15.1 15q15.1 2014-11-21 2014-11-21 101928388 ENSG00000246740 OTTHUMG00000169509 BC043275 NR_120334 +HGNC:27396 PLA2G4F phospholipase A2 group IVF protein-coding gene gene with protein product Approved 15q15.1 15q15.1 PLA2G4F/Z phospholipase A2, group IVF "Phospholipases|C2 domain containing phospholipases" "467|832" 2005-11-04 2015-11-18 2015-11-18 255189 ENSG00000168907 OTTHUMG00000172782 uc001zoz.4 NM_213600 CCDS32204 Q68DD2 "14702039|15866882" MGI:2685493 RGD:1593370 PLA2G4F objectId:1429 3.1.1.4 +HGNC:9038 PLA2G5 phospholipase A2 group V protein-coding gene gene with protein product Approved 1p36.13 01p36.13 phospholipase A2, group V Phospholipases 467 1994-11-30 2015-11-18 2016-10-05 5322 ENSG00000127472 OTTHUMG00000002698 uc001bcy.4 U03090 NM_000929 CCDS202 P39877 "8838795|8300559" MGI:101899 RGD:62051 PLA2G5 601192 286639 objectId:1430 3.1.1.4 +HGNC:9039 PLA2G6 phospholipase A2 group VI protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "iPLA2|PNPLA9|PARK14|iPLA2beta|NBIA2" neurodegeneration with brain iron accumulation 2 phospholipase A2, group VI (cytosolic, calcium-independent) "Ankyrin repeat domain containing|Patatin like phospholipase domain containing|Phospholipases|Parkinson disease associated genes" "403|466|467|672" 1998-09-07 2015-11-18 2016-10-12 8398 ENSG00000184381 OTTHUMG00000151246 uc003auy.2 AF064594 NM_001004426 "CCDS13967|CCDS33645" O60733 "9417066|16799181|19029121" MGI:1859152 RGD:628867 LRG_1015|http://www.lrg-sequence.org/LRG/LRG_1015 PLA2G6 603604 117873 objectId:1431 3.1.1.4 +HGNC:9040 PLA2G7 phospholipase A2 group VII protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "PAFAH|LDL-PLA2" phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) Phospholipases 467 1999-09-20 2015-11-18 2016-10-05 7941 ENSG00000146070 OTTHUMG00000014789 uc021zae.2 U20157 XM_005249408 CCDS4917 Q13093 "7700381|8624782" MGI:1351327 RGD:1310734 PLA2G7 601690 objectId:1432 3.1.1.4 +HGNC:9029 PLA2G10 phospholipase A2 group X protein-coding gene gene with protein product Approved 16p13.12 16p13.12 GXPLA2 phospholipase A2, group X Phospholipases 467 1998-09-07 2015-11-18 2016-10-05 8399 ENSG00000069764 OTTHUMG00000048069 uc002dcq.4 U95301 NM_003561 CCDS10555 O15496 9188469 MGI:1347522 RGD:61935 PLA2G10 603603 objectId:1422 3.1.1.4 +HGNC:18554 PLA2G12A phospholipase A2 group XIIA protein-coding gene gene with protein product Approved 4q25 04q25 PLA2G12 "phospholipase A2, group XII|phospholipase A2, group XIIA" Phospholipases 467 2002-04-26 2004-01-14 2015-11-18 2015-11-18 81579 ENSG00000123739 OTTHUMG00000131915 uc003hzp.4 NM_030821 CCDS3686 Q9BZM1 11031251 MGI:1913600 RGD:1304662 PLA2G12A 611652 objectId:1423 3.1.1.4 +HGNC:39248 PLA2G12AP1 phospholipase A2 group XIIA pseudogene 1 pseudogene pseudogene Approved 1p32.3 01p32.3 phospholipase A2, group XIIA pseudogene 1 2010-11-24 2015-11-18 2015-11-18 100420258 ENSG00000224680 OTTHUMG00000008103 NG_027094 PGOHUM00000244721 +HGNC:39249 PLA2G12AP2 phospholipase A2 group XIIA pseudogene 2 pseudogene pseudogene Approved 13q13.3 13q13.3 phospholipase A2, group XIIA pseudogene 2 2010-11-24 2015-11-18 2015-11-18 100420281 ENSG00000225221 OTTHUMG00000016761 NG_024917 PGOHUM00000248570 +HGNC:18555 PLA2G12B phospholipase A2 group XIIB protein-coding gene gene with protein product Approved 10q22.1 10q22.1 PLA2G13 "phospholipase A2, group XIII|phospholipase A2, group XIIB" Phospholipases 467 2002-04-26 2004-01-14 2015-11-18 2015-11-18 84647 ENSG00000138308 OTTHUMG00000018446 uc001jtf.2 AF349540 NM_032562 CCDS7319 Q9BX93 MGI:1917086 RGD:1588484 PLA2G12B 611653 3.1.1.4 +HGNC:17163 PLA2G15 phospholipase A2 group XV protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "LLPL|GXVPLA2" LYPLA3 "lysophospholipase 3 (lysosomal phospholipase A2)|phospholipase A2, group XV" Phospholipases 467 2002-01-23 2008-09-19 2015-11-18 2015-11-18 23659 ENSG00000103066 OTTHUMG00000137554 uc002evr.4 AB017494 NM_012320 CCDS10864 Q8NCC3 "10092508|16973413" MGI:2178076 RGD:1302982 PLA2G15 609362 +HGNC:17825 PLA2G16 phospholipase A2 group XVI protein-coding gene gene with protein product Approved 11q12.3-q13.1 11q12.3-q13.1 "HREV107|H-REV107-1|HREV107-3|MGC118754.|AdPLA" adipose-specific PLA2 HRASLS3 "HRAS-like suppressor 3|phospholipase A2, group XVI" "Phospholipases| HRAS like suppressor family" "467|1227" 2002-01-29 2008-09-19 2015-11-18 2016-10-11 11145 ENSG00000176485 OTTHUMG00000167852 uc001nxh.4 X92814 NM_001128203 CCDS8047 P53816 "9771974|18614531" MGI:2179715 RGD:2829 PLA2G16 613867 3.1.1.4 +HGNC:9042 PLA2R1 phospholipase A2 receptor 1 protein-coding gene gene with protein product Approved 2q23-q24 02q23-q24 "PLA2G1R|PLA2IR|PLA2-R|CLEC13C" "phospholipase A2 receptor 1, 180kD|phospholipase A2 receptor 1, 180kDa" C-type lectin domain family 494 1999-10-05 2015-11-09 2015-11-09 22925 ENSG00000153246 OTTHUMG00000154087 uc002ube.3 U17033 XR_001738671 "CCDS33309|CCDS42767" Q13018 "7721806|7925459" MGI:102468 RGD:1309777 PLA2R1 604939 +HGNC:9043 PLAA phospholipase A2 activating protein protein-coding gene gene with protein product Approved 9p21.2 09p21.2 "PLAP|PLA2P|FLJ11281|FLJ12699|DOA1" DOA1 homolog (S. cerevisiae) WD repeat domain containing 362 1999-04-15 2016-02-12 2016-10-05 9373 ENSG00000137055 OTTHUMG00000019708 uc003zqd.4 AF083395 NM_001031689 CCDS35000 Q9Y263 "9931468|10644453" MGI:104810 RGD:621245 PLAA 603873 +HGNC:9044 PLAC1 placenta specific 1 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "CT92|OOSP2L" cancer/testis antigen 92 1998-12-10 2015-11-10 2015-11-10 10761 ENSG00000170965 OTTHUMG00000022457 uc004exo.2 AF234654 NM_021796 CCDS14642 Q9HBJ0 10995572 MGI:1926287 RGD:7688773 PLAC1 300296 +HGNC:14616 PLAC4 placenta specific 4 protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "MGC126664|MGC126666|PRED78" C21orf115 chromosome 21 open reading frame 115 2002-04-03 2015-11-11 2015-11-11 191585 ENSG00000280109 OTTHUMG00000086743 uc002yyz.4 BG354570 NM_182832 Q8WY50 613770 +HGNC:14617 PLAC5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-09-12 +HGNC:19254 PLAC8 placenta specific 8 protein-coding gene gene with protein product Approved 4q21.22 04q21.22 "onzin|C15" 2002-09-24 2015-11-13 2015-11-13 51316 ENSG00000145287 OTTHUMG00000130294 uc062xvn.1 AF208846 NM_016619 CCDS3601 Q9NZF1 "12758124|12384430" MGI:2445289 RGD:1308102 PLAC8 607515 +HGNC:31746 PLAC8L1 PLAC8 like 1 protein-coding gene gene with protein product Approved 5q32 05q32 2004-07-12 2016-06-23 2016-06-23 153770 ENSG00000173261 OTTHUMG00000163418 uc003lnv.4 XM_087761 CCDS34264 A1L4L8 MGI:1916651 RGD:1588513 PLAC8L1 +HGNC:19255 PLAC9 placenta specific 9 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 2002-09-24 2015-11-13 2016-10-05 219348 ENSG00000189129 OTTHUMG00000018596 uc001kbp.2 NM_001012973 CCDS31232 Q5JTB6 "MGI:2663998|MGI:3711222" RGD:1306662 PLAC9 612857 +HGNC:9045 PLAG1 PLAG1 zinc finger protein-coding gene gene with protein product Approved 8q12 08q12 ZNF912 pleiomorphic adenoma gene 1 Zinc fingers C2H2-type 28 1998-02-11 2015-12-16 2015-12-16 5324 ENSG00000181690 OTTHUMG00000164310 uc003xsr.5 U65002 NM_002655 "CCDS6165|CCDS47860" Q6DJT9 9268638 MGI:1891916 RGD:1305286 PLAG1 603026 458247 476 +HGNC:9046 PLAGL1 PLAG1 like zinc finger 1 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 "ZAC|LOT1" pleiomorphic adenoma gene-like 1 Zinc fingers C2H2-type 28 1998-02-17 2015-12-16 2016-10-12 5325 ENSG00000118495 OTTHUMG00000015738 uc003qkj.5 U81992 NM_001289044 "CCDS5202|CCDS5203" Q9UM63 "9722527|9671765" MGI:1100874 RGD:3014 LRG_1101|http://www.lrg-sequence.org/LRG/LRG_1101 PLAGL1 603044 159813 +HGNC:9047 PLAGL2 PLAG1 like zinc finger 2 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 ZNF900 C2H2-type zinc finger protein pleiomorphic adenoma gene-like 2 Zinc fingers C2H2-type 28 1998-02-17 2015-12-16 2015-12-16 5326 ENSG00000126003 OTTHUMG00000032210 uc002wxn.3 NM_002657 CCDS13197 Q9UPG8 "15585652|17950244" MGI:1933165 RGD:1307999 PLAGL2 604866 364 +HGNC:9051 PLAT plasminogen activator, tissue type protein-coding gene gene with protein product Approved 8p11.21 08p11.21 plasminogen activator, tissue 2001-06-22 2016-01-11 2016-10-12 5327 ENSG00000104368 OTTHUMG00000164072 uc003xos.3 NM_000930 "CCDS6126|CCDS6127|CCDS83291" P00750 MGI:97610 RGD:3342 LRG_570|http://www.lrg-sequence.org/LRG/LRG_570 PLAT 173370 S01.232 objectId:2392 +HGNC:9052 PLAU plasminogen activator, urokinase protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "URK|UPA" 2001-06-22 2016-10-12 5328 ENSG00000122861 OTTHUMG00000018494 uc001jwa.4 BC013575 NM_002658 "CCDS7339|CCDS44442" P00749 2415429 MGI:97611 RGD:3343 LRG_593|http://www.lrg-sequence.org/LRG/LRG_593 PLAU 191840 223447 S01.231 objectId:2393 3.4.21.68 +HGNC:9053 PLAUR plasminogen activator, urokinase receptor protein-coding gene gene with protein product Approved 19q13 19q13 "URKR|UPAR|CD87" "urokinase-type plasminogen activator (uPA) receptor|urokinase plasminogen activator surface receptor" "CD molecules|LY6/PLAUR domain containing" "471|1226" 1991-06-05 2015-08-25 5329 ENSG00000011422 OTTHUMG00000182778 uc002oxf.3 NM_002659 "CCDS12628|CCDS33041|CCDS33042|CCDS74386" Q03405 MGI:97612 RGD:620597 PLAUR 173391 CD87 +HGNC:30041 PLB1 phospholipase B1 protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "PLB|FLJ30866" Phospholipases 467 2004-01-29 2016-10-05 151056 ENSG00000163803 OTTHUMG00000152014 uc002rmb.3 XM_011532589 "CCDS33168|CCDS54340" Q6P1J6 12150957 MGI:1922406 RGD:621565 PLB1 610179 "3.1.1.4|3.1.1.5" +HGNC:26215 PLBD1 phospholipase B domain containing 1 protein-coding gene gene with protein product Approved 12p13.1 12p13.1 FLJ22662 PLB homolog 1 (Dictyostelium) 2009-02-24 2014-11-18 79887 ENSG00000121316 OTTHUMG00000168821 uc001rcc.2 BC000909 NM_024829 CCDS31751 Q6P4A8 "15193148|19019078" MGI:1914107 RGD:1308734 PLBD1 +HGNC:51143 PLBD1-AS1 PLBD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p13.1-p12.3 12p13.1-p12.3 2014-07-30 2016-10-11 101928290 ENSG00000256751 OTTHUMG00000168733 NR_120465 +HGNC:27283 PLBD2 phospholipase B domain containing 2 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 p76 "PLB homolog 2 (Dictyostelium)|mannose-6-phosphate protein associated protein p76" 2009-02-24 2014-11-18 196463 ENSG00000151176 OTTHUMG00000169567 uc001tve.3 BC030618 NM_173542 "CCDS9168|CCDS53834" Q8NHP8 "17105447|15193148|19019078" MGI:1919022 RGD:708461 PLBD2 C95.001 +HGNC:15917 PLCB1 phospholipase C beta 1 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "KIAA0581|PLC-I|PLC154" phospholipase C, beta 1 (phosphoinositide-specific) "Phospholipases|C2 domain containing phospholipases" "467|832" 2001-06-21 2015-11-18 2016-10-05 23236 ENSG00000182621 OTTHUMG00000031849 uc002wnb.5 AB011153 XM_011529199 "CCDS13102|CCDS13103" Q9NQ66 "10760467|11118617" MGI:97613 RGD:3344 PLCB1 607120 258534 objectId:1403 3.1.4.11 +HGNC:41414 PLCB1-IT1 PLCB1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 20p12.3 20p12.3 PLCB1 intronic transcript 1 (non-protein coding) 2012-01-20 2015-02-25 2015-02-25 100874337 ENSG00000225479 OTTHUMG00000031846 uc061vib.1 XR_001754735 +HGNC:9055 PLCB2 phospholipase C beta 2 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 FLJ38135 phospholipase C, beta 2 "Phospholipases|C2 domain containing phospholipases" "467|832" 1994-05-16 2015-11-18 2015-11-18 5330 ENSG00000137841 OTTHUMG00000172412 uc001zld.4 XM_017022314 "CCDS42020|CCDS61591|CCDS61592|CCDS73704" Q00722 "1644792|9925923" MGI:107465 RGD:621004 PLCB2 604114 objectId:1404 3.1.4.11 +HGNC:43662 PLCB2-AS1 PLCB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q15.1 15q15.1 PLCB2 antisense RNA 1 (non-protein coding) 2012-01-23 2012-08-15 2015-11-18 100874186 ENSG00000259307 OTTHUMG00000172413 uc059hrb.1 +HGNC:9056 PLCB3 phospholipase C beta 3 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 phospholipase C, beta 3 (phosphatidylinositol-specific) "Phospholipases|C2 domain containing phospholipases" "467|832" 1994-11-17 2015-11-18 2016-10-05 5331 ENSG00000149782 OTTHUMG00000167816 uc009ypi.4 Z26649 XM_011545101 "CCDS8064|CCDS53654" Q01970 7849701 MGI:104778 RGD:61993 PLCB3 600230 objectId:1405 3.1.4.11 +HGNC:9059 PLCB4 phospholipase C beta 4 protein-coding gene gene with protein product Approved 20p12.3-p12.2 20p12.3-p12.2 phospholipase C, beta 4 "Phospholipases|C2 domain containing phospholipases" "467|832" 1995-04-13 2015-11-18 2016-10-11 5332 ENSG00000101333 OTTHUMG00000031853 uc021wam.2 XM_006723568 "CCDS13104|CCDS13105|CCDS54447" Q15147 8530101 MGI:107464 RGD:3345 PLCB4 600810 302923 objectId:1406 3.1.4.11 +HGNC:9060 PLCD1 phospholipase C delta 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1 phospholipase C, delta 1 "Phospholipases|C2 domain containing phospholipases|EF-hand domain containing" "467|832|863" 1997-05-09 2015-11-17 2016-10-05 5333 ENSG00000187091 OTTHUMG00000130813 uc003chn.4 XM_017006622 "CCDS2671|CCDS46793" P51178 9345909 MGI:97614 RGD:3346 PLCD1 602142 270352 objectId:1409 3.1.4.11 +HGNC:9061 PLCD3 phospholipase C delta 3 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 phospholipase C, delta 3 "Phospholipases|C2 domain containing phospholipases" "467|832" 2000-05-31 2015-11-18 2016-10-05 113026 ENSG00000161714 OTTHUMG00000168029 uc032fjs.2 AC002117 NM_133373 CCDS74077 Q8N3E9 "10702670|9056492" MGI:107451 RGD:1310903 PLCD3 608795 objectId:1410 3.1.4.11 +HGNC:9062 PLCD4 phospholipase C delta 4 protein-coding gene gene with protein product Approved 2q35 02q35 phospholipase C, delta 4 "Phospholipases|C2 domain containing phospholipases|EF-hand domain containing" "467|832|863" 2000-05-31 2015-11-18 2015-11-18 84812 ENSG00000115556 OTTHUMG00000154743 uc061smf.1 AI366170 XM_017005114 CCDS46516 Q9BRC7 "10702683|9056492" MGI:107469 RGD:621025 PLCD4 605939 objectId:1411 3.1.4.11 +HGNC:17175 PLCE1 phospholipase C epsilon 1 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "KIAA1516|PLCE|NPHS3" "nephrosis type 3|phosphoinositide phospholipase C" phospholipase C, epsilon 1 "Phospholipases|C2 domain containing phospholipases" "467|832" 2002-02-18 2015-11-18 2016-10-05 51196 ENSG00000138193 OTTHUMG00000018789 uc001kjk.4 NM_016341 "CCDS41552|CCDS53555" Q9P212 "11022047|11022048" MGI:1921305 RGD:69424 PLCE1 608414 159233 objectId:1412 3.1.4.11 +HGNC:45193 PLCE1-AS1 PLCE1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.33 10q23.33 2013-03-06 2013-03-06 100128054 ENSG00000268894 OTTHUMG00000018787 uc057uyv.1 NR_033969 +HGNC:51206 PLCE1-AS2 PLCE1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 10q23.33 10q23.33 2014-08-07 2014-08-07 101927049 ENSG00000232913 OTTHUMG00000018783 AK098548 NR_120615 +HGNC:51906 PLCE1P1 phospholipase C epsilon 1 pseudogene 1 pseudogene pseudogene Approved Xp21.2 Xp21.2 phospholipase C, epsilon 1 pseudogene 1 2015-09-21 2015-11-18 2015-11-18 100420075 ENSG00000276940 OTTHUMG00000188010 NG_026667 PGOHUM00000304544 +HGNC:9065 PLCG1 phospholipase C gamma 1 protein-coding gene gene with protein product Approved 20q12 20q12 "PLC148|PLC-II|PLCgamma1|NCKAP3" PLC1 "phospholipase C, gamma 1 (formerly subtype 148)|phospholipase C, gamma 1" "Phospholipases|Pleckstrin homology domain containing|SH2 domain containing|C2 domain containing phospholipases|EF-hand domain containing" "467|682|741|832|863" 1989-05-31 2015-11-18 2016-10-05 5335 ENSG00000124181 OTTHUMG00000033082 uc002xjo.2 M34667 NM_182811 "CCDS13313|CCDS13314" P19174 "2167438|3254788" MGI:97615 RGD:3347 PLCG1 172420 objectId:1407 3.1.4.11 +HGNC:40450 PLCG1-AS1 PLCG1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q12 20q12 TOP1-AS1 2014-06-13 2014-11-19 101927117 ENSG00000226648 OTTHUMG00000032476 NR_109889 +HGNC:9066 PLCG2 phospholipase C gamma 2 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 phospholipase C, gamma 2 (phosphatidylinositol-specific) "Phospholipases|SH2 domain containing|C2 domain containing phospholipases" "467|741|832" 1994-05-16 2015-11-18 2016-10-12 5336 ENSG00000197943 OTTHUMG00000176532 uc002fgt.4 NM_002661 CCDS42204 P16885 7835906 MGI:97616 RGD:3348 LRG_376|http://www.lrg-sequence.org/LRG/LRG_376 PLCG2 600220 303819 objectId:1408 3.1.4.11 +HGNC:29185 PLCH1 phospholipase C eta 1 protein-coding gene gene with protein product Approved 3q25.31 03q25.31 "KIAA1069|MGC117152|DKFZp434C1372|PLCeta1" 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-1 PLCL3 "phospholipase C-like 3|phospholipase C, eta 1" "Phospholipases|C2 domain containing phospholipases|EF-hand domain containing" "467|832|863" 2004-07-28 2006-03-16 2015-11-17 2016-10-05 23007 ENSG00000114805 OTTHUMG00000158477 uc062pfi.1 AB028992 NM_014996 "CCDS33881|CCDS46939|CCDS46940" Q4KWH8 15702972 MGI:2683547 RGD:1561991 PLCH1 612835 objectId:1414 3.1.4.11 +HGNC:41231 PLCH1-AS1 PLCH1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.31 03q25.31 PLCH1 antisense RNA 1 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874035 ENSG00000239508 OTTHUMG00000158476 uc062pfh.1 +HGNC:41232 PLCH1-AS2 PLCH1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q25.31 03q25.31 PLCH1 antisense RNA 2 (non-protein coding) 2011-07-27 2012-08-15 2014-11-19 100874036 ENSG00000242925 OTTHUMG00000158497 uc062pfm.1 XR_942434 +HGNC:29037 PLCH2 phospholipase C eta 2 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "KIAA0450|PLCeta2|RP3-395M20.1|PLC-eta2" 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2 PLCL4 "phospholipase C-like 4|phospholipase C, eta 2" "Phospholipases|EF-hand domain containing" "467|863" 2004-07-28 2006-03-16 2015-11-17 2015-11-17 9651 ENSG00000149527 OTTHUMG00000000719 uc057bmp.1 AB007919 NM_014638 CCDS59959 O75038 15899900 MGI:2443078 RGD:1304675 PLCH2 612836 objectId:1415 3.1.4.11 +HGNC:9063 PLCL1 phospholipase C like 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "PLC-L|PLCL|PRIP|PPP1R127" "phospholipase C related, but catalytically inactive protein|protein phosphatase 1, regulatory subunit 127" PLCE "phospholipase C, epsilon|phospholipase C-like 1" "Protein phosphatase 1 regulatory subunits|C2 domain containing phospholipases" "694|832" 1995-12-12 2002-02-22 2015-11-17 2016-10-05 5334 ENSG00000115896 OTTHUMG00000132750 uc010fsp.4 D42108 NM_006226 CCDS2326 Q15111 7633416 MGI:3036262 RGD:708420 PLCL1 600597 +HGNC:9064 PLCL2 phospholipase C like 2 protein-coding gene gene with protein product Approved 3p24.3 03p24.3 KIAA1092 PLCE2 "phospholipase C, epsilon 2|phospholipase C-like 2" C2 domain containing phospholipases 832 2000-05-31 2002-02-22 2015-11-17 2015-11-17 23228 ENSG00000154822 OTTHUMG00000155467 uc011awd.3 AB029015 XM_017006022 "CCDS33713|CCDS74911" Q9UPR0 10470851 MGI:1352756 RGD:1305941 PLCL2 614276 +HGNC:40449 PLCL2-AS1 PLCL2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p24.3 03p24.3 PLCL2 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874003 ENSG00000226441 OTTHUMG00000155466 uc062hfq.1 +HGNC:23148 PLCXD1 phosphatidylinositol specific phospholipase C X domain containing 1 protein-coding gene gene with protein product Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 FLJ11323 phosphatidylinositol-specific phospholipase C, X domain containing 1 Pseudoautosomal region 1 715 2004-09-09 2016-01-27 2016-01-27 55344 ENSG00000182378 OTTHUMG00000022693 uc065clw.1 AK002185 NM_018390 CCDS14103 Q9NUJ7 MGI:2685422 RGD:6502568 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PLCXD1 PLCXD1 300974 +HGNC:26462 PLCXD2 phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 FLJ31579 phosphatidylinositol-specific phospholipase C, X domain containing 2 2004-09-09 2016-01-27 2016-01-27 257068 ENSG00000240891 OTTHUMG00000159279 uc003dxz.3 AK056141 NM_153268 "CCDS2961|CCDS54619" Q0VAA5 MGI:3647874 RGD:1563504 PLCXD2 617015 +HGNC:41145 PLCXD2-AS1 PLCXD2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.2 03q13.2 PLCXD2 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874115 ENSG00000240766 OTTHUMG00000159277 uc062mis.1 NR_046733 +HGNC:31822 PLCXD3 phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 phosphatidylinositol-specific phospholipase C, X domain containing 3 2004-09-09 2016-01-27 2016-01-27 345557 ENSG00000182836 OTTHUMG00000162076 uc063dgi.1 XM_293875 CCDS34150 Q63HM9 MGI:2442605 RGD:1308448 PLCXD3 617016 +HGNC:19218 PLCZ1 phospholipase C zeta 1 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "NYD-SP27|PLCzeta" phospholipase C, zeta 1 "Phospholipases|C2 domain containing phospholipases|EF-hand domain containing" "467|832|863" 2002-09-13 2015-11-18 2016-10-05 89869 ENSG00000139151 OTTHUMG00000168937 uc058lrt.1 AY035866 NM_033123 "CCDS8680|CCDS81671" Q86YW0 12117804 MGI:2150308 RGD:1359567 PLCZ1 608075 objectId:1413 3.1.4.11 +HGNC:9067 PLD1 phospholipase D1 protein-coding gene gene with protein product Approved 3q26.31 03q26.31 choline phosphatase 1 phospholipase D1, phosphatidylcholine-specific "Phospholipases|Pleckstrin homology domain containing" "467|682" 1997-05-29 2015-11-18 2016-10-05 5337 ENSG00000075651 OTTHUMG00000156947 uc003fht.4 U38545 NM_002662 "CCDS3216|CCDS46957" Q13393 "9858822|8530346" MGI:109585 RGD:3349 PLD1 602382 objectId:1433 3.1.4.4 +HGNC:9068 PLD2 phospholipase D2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 choline phosphatase 2 Phospholipases 467 1998-08-21 2016-10-05 5338 ENSG00000129219 OTTHUMG00000090779 uc002fzc.4 AF035483 NM_002663 "CCDS11057|CCDS58507" O14939 "9858823|9582313" MGI:892877 RGD:3350 PLD2 602384 objectId:1434 3.1.4.4 +HGNC:17158 PLD3 phospholipase D family member 3 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 HU-K4 "phospholipase D3|phospholipase D family, member 3" Phospholipases 467 2003-01-06 2015-11-18 2015-11-18 23646 ENSG00000105223 OTTHUMG00000152736 uc060yrn.1 BC000553 NM_012268 CCDS33027 Q8IV08 "9140189|15794758" MGI:1333782 RGD:1308248 PLD3 615698 +HGNC:23792 PLD4 phospholipase D family member 4 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 C14orf175 "chromosome 14 open reading frame 175|phospholipase D family, member 4" Phospholipases 467 2004-06-11 2005-05-20 2015-11-18 2015-11-18 122618 ENSG00000166428 OTTHUMG00000144167 uc001ypu.2 NM_138790 "CCDS9995|CCDS76725" Q96BZ4 MGI:2144765 RGD:1598308 PLD4 +HGNC:26879 PLD5 phospholipase D family member 5 protein-coding gene gene with protein product Approved 1q43 01q43 FLJ40773 phospholipase D family, member 5 Phospholipases 467 2005-05-20 2015-11-18 2016-04-25 200150 ENSG00000180287 OTTHUMG00000039867 uc057qtq.1 AK098092 NM_152666 "CCDS1621|CCDS55692" Q8N7P1 MGI:2442056 RGD:1562609 PLD5 +HGNC:30447 PLD6 phospholipase D family member 6 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 phospholipase D family, member 6 Phospholipases 467 2008-08-14 2015-11-18 2015-11-18 201164 ENSG00000179598 OTTHUMG00000059278 uc002gqz.4 AK090899 NM_178836 CCDS11182 Q8N2A8 12477932 MGI:2687283 RGD:1311987 PLD6 614960 +HGNC:9069 PLEC plectin protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "PCN|PLTN" "EBS1|PLEC1" "plectin 1, intermediate filament binding protein, 500kD|epidermolysis bullosa simplex 1 (Ogna)|plectin 1, intermediate filament binding protein 500kDa" Plakins 939 1997-08-22 2010-02-04 2010-02-04 2016-10-05 5339 ENSG00000178209 OTTHUMG00000165291 uc064rfy.1 U53204 NM_000445 "CCDS43769|CCDS43770|CCDS43771|CCDS43772|CCDS43773|CCDS43774|CCDS43775|CCDS47936" Q15149 "8633055|8696340" MGI:1277961 RGD:621649 PLEC 601282 117877 +HGNC:9070 PLEK pleckstrin protein-coding gene gene with protein product Approved 2p14 02p14 P47 Pleckstrin homology domain containing 682 1998-04-07 2016-10-05 5341 ENSG00000115956 OTTHUMG00000129562 uc002sen.5 X07743 NM_002664 CCDS1887 P08567 "2897630|12054651" MGI:1860485 RGD:1308269 PLEK 173570 +HGNC:19238 PLEK2 pleckstrin 2 protein-coding gene gene with protein product Approved 14q23.3-q24.1 14q23.3-q24.1 Pleckstrin homology domain containing 682 2002-09-16 2016-10-11 26499 ENSG00000100558 OTTHUMG00000171247 uc001xjh.2 AF228603 XM_011536644 CCDS9782 Q9NYT0 "11911883|17658464" MGI:1351466 RGD:1305786 PLEK2 608007 +HGNC:14335 PLEKHA1 pleckstrin homology domain containing A1 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 TAPP1 tandem PH domain containing protein-1 "pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 1|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1" Pleckstrin homology domain containing 682 2001-02-09 2015-11-18 2016-10-05 59338 ENSG00000107679 OTTHUMG00000019184 uc001lge.3 AF286160 NM_001001974 "CCDS7629|CCDS55730|CCDS81517" Q9HB21 "11001876|15485858" MGI:2442213 RGD:1564153 PLEKHA1 607772 +HGNC:14336 PLEKHA2 pleckstrin homology domain containing A2 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 TAPP2 tandem PH Domain containing protein-2 "pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 2" Pleckstrin homology domain containing 682 2001-02-09 2015-11-18 2015-11-18 59339 ENSG00000169499 OTTHUMG00000164069 uc033bis.2 AF286164 NM_021623 CCDS75732 Q9HB19 11001876 MGI:1928144 RGD:1586710 PLEKHA2 607773 +HGNC:14338 PLEKHA3 pleckstrin homology domain containing A3 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 FAPP1 four-phosphate-adaptor protein 1 "pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3" Pleckstrin homology domain containing 682 2001-02-09 2015-11-18 2015-11-18 65977 ENSG00000116095 OTTHUMG00000154446 uc002umn.4 AF286162 NM_019091 CCDS33336 Q9HB20 "11001876|15107860" MGI:1932515 RGD:1305244 PLEKHA3 607774 +HGNC:19648 PLEKHA3P1 pleckstrin homology domain containing A3 pseudogene 1 pseudogene pseudogene Approved 19q13.2 19q13.2 PLEKHA3P "pleckstrin homology domain-containing, family A member 3 pseudogene 1|pleckstrin homology domain containing, family A member 3 pseudogene 1" 2003-04-23 2015-11-18 2015-11-18 91405 ENSG00000269800 OTTHUMG00000182622 NG_000949 PGOHUM00000259335 +HGNC:14339 PLEKHA4 pleckstrin homology domain containing A4 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 PEPP1 "pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 4|pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4" Pleckstrin homology domain containing 682 2001-02-09 2015-11-18 2015-11-18 57664 ENSG00000105559 OTTHUMG00000183329 uc002pkx.4 AY007233 XM_011527158 "CCDS12737|CCDS54291" Q9H4M7 11001876 MGI:1916467 RGD:735133 PLEKHA4 607769 +HGNC:30036 PLEKHA5 pleckstrin homology domain containing A5 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "PEPP2|KIAA1686|FLJ10667" pleckstrin homology domain containing, family A member 5 Pleckstrin homology domain containing 682 2004-07-30 2015-11-18 2016-10-05 54477 ENSG00000052126 OTTHUMG00000167921 uc001reb.4 AF302150 NM_019012 "CCDS44840|CCDS55809|CCDS58213|CCDS58214|CCDS8682" Q9HAU0 "11214970|11001876" MGI:1923802 RGD:621175 PLEKHA5 607770 +HGNC:17053 PLEKHA6 pleckstrin homology domain containing A6 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "PEPP3|KIAA0969" pleckstrin homology domain containing, family A member 6 Pleckstrin homology domain containing 682 2004-07-30 2015-11-18 2016-10-05 22874 ENSG00000143850 OTTHUMG00000036057 uc001hau.5 AB023186 NM_014935 CCDS1444 Q9Y2H5 11001876 MGI:2388662 RGD:1564395 PLEKHA6 607771 +HGNC:27049 PLEKHA7 pleckstrin homology domain containing A7 protein-coding gene gene with protein product Approved 11p15 11p15 DKFZp686M22243 pleckstrin homology domain containing, family A member 7 Pleckstrin homology domain containing 682 2004-09-01 2015-11-18 2015-11-18 144100 ENSG00000166689 OTTHUMG00000165954 uc001mmo.4 BC033239 NM_175058 CCDS31434 Q6IQ23 20808826 MGI:2445094 RGD:1598216 PLEKHA7 612686 +HGNC:30037 PLEKHA8 pleckstrin homology domain containing A8 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "FAPP2|MGC3358" pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8 Pleckstrin homology domain containing 682 2004-09-16 2015-11-18 2015-11-18 84725 ENSG00000106086 OTTHUMG00000097751 uc003taq.4 BC053990 NM_032639 "CCDS5424|CCDS56473|CCDS75574" Q96JA3 11001876 MGI:2681164 RGD:1563940 PLEKHA8 608639 +HGNC:30222 PLEKHA8P1 pleckstrin homology domain containing A8 pseudogene 1 pseudogene pseudogene Approved 12q12 12q12 FLJ14156 putative glycolipid transfer protein PLEKHA9 "pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 9|pleckstrin homology domain containing, family A member 8 pseudogene 1" 2004-09-16 2010-11-24 2015-11-18 2015-11-18 51054 ENSG00000134297 AF103731 NR_037144 O95397 12477932 PLEKHA8P1 +HGNC:19079 PLEKHB1 pleckstrin homology domain containing B1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "PHR1|KPL1" PHRET1 "PH domain containing, retinal 1|pleckstrin homology domain containing, family B (evectins) member 1" Pleckstrin homology domain containing 682 2002-08-06 2002-11-08 2015-11-18 2016-10-05 58473 ENSG00000021300 OTTHUMG00000168030 uc001oua.3 AF081583 XM_011545192 "CCDS44672|CCDS44673|CCDS44674|CCDS44675" Q9UF11 10585447 MGI:1351469 RGD:621614 PLEKHB1 607651 +HGNC:19236 PLEKHB2 pleckstrin homology domain containing B2 protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "EVT2|FLJ20783" pleckstrin homology domain containing, family B (evectins) member 2 Pleckstrin homology domain containing 682 2002-11-04 2015-11-18 2016-10-05 55041 ENSG00000115762 OTTHUMG00000131656 uc002tsj.5 NM_017958 "CCDS2166|CCDS46413|CCDS58729|CCDS58730|CCDS74576|CCDS74577|CCDS58731" Q96CS7 10200314 MGI:2385825 RGD:1310954 PLEKHB2 +HGNC:20148 PLEKHD1 pleckstrin homology and coiled-coil domain containing D1 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 UPF0639 "pleckstrin homology domain containing, family D (with M protein repeats) member 1|pleckstrin homology domain containing, family D (with coiled-coil domains) member 1" Pleckstrin homology domain containing 682 2002-12-18 2015-11-18 2015-11-18 400224 ENSG00000175985 OTTHUMG00000171233 uc010ttf.2 AK126770 NM_001161498 CCDS53903 A6NEE1 MGI:3036228 RGD:1566112 PLEKHD1 +HGNC:20764 PLEKHF1 pleckstrin homology and FYVE domain containing 1 protein-coding gene gene with protein product Approved 19q12 19q12 "APPD|MGC4090|PHAFIN1|ZFYVE15" pleckstrin homology domain containing, family F (with FYVE domain) member 1 "Zinc fingers FYVE-type|Pleckstrin homology domain containing" "81|682" 2003-04-01 2015-11-18 2016-01-15 79156 ENSG00000166289 OTTHUMG00000182097 uc002nsh.5 AF434818 NM_024310 CCDS12417 Q96S99 MGI:1919537 RGD:1310544 PLEKHF1 615200 +HGNC:20757 PLEKHF2 pleckstrin homology and FYVE domain containing 2 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "ZFYVE18|PHAFIN2|FLJ13187" pleckstrin homology domain containing, family F (with FYVE domain) member 2 "Zinc fingers FYVE-type|Pleckstrin homology domain containing" "81|682" 2003-04-01 2015-11-18 2015-11-18 79666 ENSG00000175895 OTTHUMG00000164660 uc003yhn.3 AF434819 NM_024613 CCDS6267 Q9H8W4 MGI:1919051 RGD:1312029 PLEKHF2 615208 +HGNC:20884 PLEKHG1 pleckstrin homology and RhoGEF domain containing G1 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "KIAA1209|ARHGEF41" pleckstrin homology domain containing, family G (with RhoGef domain) member 1 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2003-04-23 2015-11-18 2015-11-18 57480 ENSG00000120278 OTTHUMG00000015824 uc003qny.1 AB033035 XM_011535981 CCDS34552 Q9ULL1 10574462 MGI:2676551 RGD:1583676 PLEKHG1 +HGNC:29515 PLEKHG2 pleckstrin homology and RhoGEF domain containing G2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "CLG|FLJ00018|ARHGEF42" pleckstrin homology domain containing, family G (with RhoGef domain) member 2 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2004-12-01 2015-11-18 2015-11-18 64857 ENSG00000090924 OTTHUMG00000152570 uc010xuz.3 AK024429 NM_022835 CCDS33022 Q9H7P9 "11839748|18045877" MGI:2141874 RGD:1310112 PLEKHG2 611893 +HGNC:20364 PLEKHG3 pleckstrin homology and RhoGEF domain containing G3 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 ARHGEF43 KIAA0599 "KIAA0599|pleckstrin homology domain containing, family G (with RhoGef domain) member 3" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2003-11-21 2004-12-01 2015-11-18 2015-11-18 26030 ENSG00000126822 OTTHUMG00000029671 uc001xho.3 AB011171 NM_015549 CCDS76690 A1L390 MGI:2388284 RGD:1308089 PLEKHG3 +HGNC:24501 PLEKHG4 pleckstrin homology and RhoGEF domain containing G4 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "DKFZP434I216|ARHGEF44" puratrophin-1 SCA4 "spinocerebellar ataxia 4|pleckstrin homology domain containing, family G (with RhoGef domain) member 4" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2005-03-09 2015-11-18 2015-11-18 25894 ENSG00000196155 OTTHUMG00000172936 uc002eso.5 AK024475 NM_015432 "CCDS32466|CCDS45512" Q58EX7 "16491300|16001362" MGI:2142544 RGD:1310790 PLEKHG4 609526 117882 +HGNC:29399 PLEKHG4B pleckstrin homology and RhoGEF domain containing G4B protein-coding gene gene with protein product Approved 5p15.33 05p15.33 KIAA1909 pleckstrin homology domain containing, family G (with RhoGef domain) member 4B Pleckstrin homology domain containing 682 2007-12-14 2015-11-18 2015-11-18 153478 ENSG00000153404 OTTHUMG00000161570 uc003jak.3 BC008352 NM_052909 CCDS34124 Q96PX9 11572484 PLEKHG4B +HGNC:29105 PLEKHG5 pleckstrin homology and RhoGEF domain containing G5 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "KIAA0720|Syx|GEF720|Tech" synectin-binding guanine exchange factor pleckstrin homology domain containing, family G (with RhoGef domain) member 5 Pleckstrin homology domain containing 682 2005-05-23 2005-08-09 2015-11-18 2016-10-12 57449 ENSG00000171680 OTTHUMG00000000905 uc001anm.3 AK024676 NM_020631 "CCDS79|CCDS41240|CCDS41241|CCDS57967|CCDS57968|CCDS57969" O94827 17564964 MGI:2652860 RGD:1303132 LRG_262|http://www.lrg-sequence.org/LRG/LRG_262 PLEKHG5 611101 167889 +HGNC:25562 PLEKHG6 pleckstrin homology and RhoGEF domain containing G6 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "FLJ10665|MYOGEF" myosin II interacting GEF pleckstrin homology domain containing, family G (with RhoGef domain) member 6 Pleckstrin homology domain containing 682 2005-05-23 2015-11-18 2015-11-18 55200 ENSG00000008323 OTTHUMG00000168266 uc001qnr.4 AK001527 NM_018173 "CCDS8541|CCDS44808" Q3KR16 "16721066|17881735" MGI:2682298 RGD:2318544 PLEKHG6 611743 +HGNC:33829 PLEKHG7 pleckstrin homology and RhoGEF domain containing G7 protein-coding gene gene with protein product Approved 12q22 12q22 FLJ46688 pleckstrin homology domain containing, family G (with RhoGef domain) member 7 Pleckstrin homology domain containing 682 2007-12-14 2015-11-18 2015-11-18 440107 ENSG00000187510 OTTHUMG00000170106 uc001tcj.3 AK128530 NM_001004330 CCDS31873 Q6ZR37 RGD:7576392 PLEKHG7 +HGNC:17733 PLEKHH1 pleckstrin homology, MyTH4 and FERM domain containing H1 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 KIAA1200 pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 "Pleckstrin homology domain containing|FERM domain containing" "682|1293" 2003-10-09 2015-11-18 2015-11-18 57475 ENSG00000054690 OTTHUMG00000171272 uc001xjl.2 AB033026 XM_031054 CCDS45128 Q9ULM0 10574462 MGI:2144989 RGD:1308362 PLEKHH1 +HGNC:30506 PLEKHH2 pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding gene gene with protein product Approved 2p21 02p21 "KIAA2028|PLEKHH1L" pleckstrin homology domain containing, family H (with MyTH4 domain) member 2 "Pleckstrin homology domain containing|FERM domain containing" "682|1293" 2004-07-30 2015-11-18 2016-10-05 130271 ENSG00000152527 OTTHUMG00000128657 uc010yny.3 AB095948 NM_172069 CCDS1812 Q8IVE3 MGI:2146813 RGD:1304935 PLEKHH2 612723 +HGNC:26105 PLEKHH3 pleckstrin homology, MyTH4 and FERM domain containing H3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 FLJ21019 pleckstrin homology domain containing, family H (with MyTH4 domain) member 3 "Pleckstrin homology domain containing|FERM domain containing" "682|1293" 2006-01-26 2015-11-18 2015-11-18 79990 ENSG00000068137 OTTHUMG00000180641 uc002iau.5 BC052978 NM_024927 CCDS11434 Q7Z736 12477932 MGI:2384950 RGD:1304854 PLEKHH3 +HGNC:18211 PLEKHJ1 pleckstrin homology domain containing J1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ10297 guanine nucleotide releasing protein x pleckstrin homology domain containing, family J member 1 Pleckstrin homology domain containing 682 2004-02-13 2015-11-18 2015-11-18 55111 ENSG00000104886 OTTHUMG00000180425 uc002lvf.2 AK001159 NM_018049 "CCDS12083|CCDS74251" Q9NW61 11602354 MGI:1925920 RGD:1307213 PLEKHJ1 +HGNC:29017 PLEKHM1 pleckstrin homology and RUN domain containing M1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 KIAA0356 pleckstrin homology domain containing, family M (with RUN domain) member 1 Pleckstrin homology domain containing 682 2004-02-27 2015-11-18 2015-11-18 9842 ENSG00000225190 OTTHUMG00000179074 uc002ija.4 X85792 NM_014798 CCDS32671 Q9Y4G2 "9205841|12820725" MGI:2443207 RGD:1308010 PLEKHM1 611466 212898 +HGNC:35411 PLEKHM1P1 pleckstrin homology and RUN domain containing M1 pseudogene 1 pseudogene pseudogene Approved 17q24.1 17q24.1 LOC440456 PLEKHM1P pleckstrin homology domain containing, family M (with RUN domain) member 1 pseudogene 2009-01-09 2015-11-18 2015-11-18 2015-11-18 440456 ENSG00000214176 OTTHUMG00000179296 NR_024386 +HGNC:29131 PLEKHM2 pleckstrin homology and RUN domain containing M2 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 KIAA0842 pleckstrin homology domain containing, family M (with RUN domain) member 2 Pleckstrin homology domain containing 682 2004-02-27 2015-11-18 2016-10-05 23207 ENSG00000116786 OTTHUMG00000003062 uc010obo.2 AB020649 NM_015164 CCDS44063 Q8IWE5 10048485 MGI:1916832 RGD:1307005 PLEKHM2 609613 +HGNC:34006 PLEKHM3 pleckstrin homology domain containing M3 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 DAPR differentiation associated protein PLEKHM1L "pleckstrin homology domain containing, family M, member 1-like|pleckstrin homology domain containing, family M, member 3" Pleckstrin homology domain containing 682 2008-02-28 2008-04-03 2015-11-18 2015-11-18 389072 ENSG00000178385 OTTHUMG00000154781 uc002vcl.3 AK057612 NM_001080475 CCDS42808 Q6ZWE6 19028694 MGI:2443627 RGD:1307151 PLEKHM3 +HGNC:25284 PLEKHN1 pleckstrin homology domain containing N1 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 DKFZP434H2010 pleckstrin homology domain containing, family N member 1 Pleckstrin homology domain containing 682 2005-06-03 2015-11-18 2015-11-18 84069 ENSG00000187583 OTTHUMG00000040756 uc001acd.4 AL136730 NM_032129 "CCDS4|CCDS53256" Q494U1 11230166 MGI:2387630 RGD:1311019 PLEKHN1 +HGNC:24310 PLEKHO1 pleckstrin homology domain containing O1 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "CKIP-1|OC120" pleckstrin homology domain containing, family O member 1 Pleckstrin homology domain containing 682 2005-11-28 2015-11-18 2015-11-18 51177 ENSG00000023902 OTTHUMG00000012510 uc001ett.4 AF073836 NM_016274 "CCDS945|CCDS76210" Q53GL0 10799509 MGI:1914470 RGD:1311487 PLEKHO1 608335 +HGNC:30026 PLEKHO2 pleckstrin homology domain containing O2 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "DKFZp761K2312|PP1628|pp9099" PLEKHQ1 "pleckstrin homology domain containing, family Q member 1|pleckstrin homology domain containing, family O member 2" Pleckstrin homology domain containing 682 2006-02-07 2007-12-14 2015-11-18 2015-11-18 80301 ENSG00000241839 OTTHUMG00000133050 uc002anv.4 AF318373 NM_025201 "CCDS10196|CCDS73739" Q8TD55 12477932 MGI:2143132 RGD:1305718 PLEKHO2 +HGNC:26285 PLEKHS1 pleckstrin homology domain containing S1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "FLJ23537|bA211N11.2" C10orf81 "chromosome 10 open reading frame 81|pleckstrin homology domain containing, family S member 1" Pleckstrin homology domain containing 682 2004-02-18 2012-05-31 2015-11-18 2016-10-05 79949 ENSG00000148735 OTTHUMG00000019074 uc001lar.3 AK027190 NM_024889 "CCDS7583|CCDS53580|CCDS53581" Q5SXH7 12477932 MGI:2443041 RGD:1559884 PLEKHS1 +HGNC:30053 PLET1 placenta expressed transcript 1 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 placenta-expressed transcript 1 C11orf34 chromosome 11 open reading frame 34 2004-03-31 2013-10-14 2013-10-14 2014-11-19 349633 ENSG00000188771 OTTHUMG00000167189 AY364431 NM_001145024 CCDS44732 Q6UQ28 MGI:1923759 RGD:1359217 611904 +HGNC:9071 PLG plasminogen protein-coding gene gene with protein product Approved 6q26 06q26 2001-06-22 2016-10-12 5340 ENSG00000122194 OTTHUMG00000015957 uc003qtm.5 M74220 NM_000301 "CCDS5279|CCDS55074" P00747 MGI:97620 RGD:619893 LRG_571|http://www.lrg-sequence.org/LRG/LRG_571 PLG 173350 117886 S01.233 objectId:2394 +HGNC:9074 PLGLA plasminogen-like A (pseudogene) pseudogene pseudogene Approved 2q12.2 02q12.2 "PLGP2|PLGLA1" "plasminogen pseudogene 2|plasminogen-like A1|plasminogen-like A" 1992-06-09 2008-02-07 2013-03-28 2014-11-18 285189 ENSG00000240935 OTTHUMG00000153188 "U67178|M86872|M86873" NR_003506.2 Q15195 1986355 612212 +HGNC:9072 PLGLB1 plasminogen-like B1 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 PRP-B PLGL plasminogen-like 1989-05-10 2005-03-31 2005-03-31 2014-11-19 5343 ENSG00000183281 OTTHUMG00000154612 uc061lnw.1 "M86874|M86875|M86876" NM_001032392 CCDS33238 Q02325 "1554698|2714803" PLGLB1 173340 +HGNC:9073 PLGLB2 plasminogen-like B2 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 PLGP1 plasminogen pseudogene 1 1992-06-09 2005-03-31 2005-03-31 2014-11-18 5342 ENSG00000125551 OTTHUMG00000153273 uc002ssl.4 "M86871|M93143" NM_002665 CCDS1999 Q02325 1986355 PLGLB2 +HGNC:23633 PLGRKT plasminogen receptor with a C-terminal lysine protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "MDS030|FLJ14688|AD025|Plg-RKT" "uncharacterized hematopoietic stem/progenitor cells protein MDS030|plasminogen receptor with a C-terminal lysine" C9orf46 "chromosome 9 open reading frame 46|plasminogen receptor, C-terminal lysine transmembrane protein" 2003-11-27 2012-04-12 2016-04-19 2016-04-19 55848 ENSG00000107020 OTTHUMG00000019501 uc003zjc.5 AF225420 NM_018465 CCDS6463 Q9HBL7 "12477932|21940822" MGI:1915009 RGD:1306839 +HGNC:9076 PLIN1 perilipin 1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 PLIN perilipin Perilipins 678 1997-07-22 2009-08-12 2009-08-12 2016-10-05 5346 ENSG00000166819 OTTHUMG00000149813 uc010upx.3 AB005293 NM_002666 CCDS10353 O60240 "9521880|19638644" MGI:1890505 RGD:3351 PLIN1 170290 280360 +HGNC:248 PLIN2 perilipin 2 protein-coding gene gene with protein product Approved 9p22.1 09p22.1 ADRP adipophilin ADFP adipose differentiation-related protein Perilipins 678 1992-02-07 2009-08-12 2009-08-12 2014-11-18 123 ENSG00000147872 OTTHUMG00000019624 uc003zno.4 X97324 NM_001122 CCDS6490 Q99541 "9003395|19638644" MGI:87920 RGD:728889 PLIN2 103195 +HGNC:16893 PLIN3 perilipin 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "TIP47|PP17" "cargo selection protein (mannose 6 phosphate receptor binding protein)|placental protein 17|MPR-BINDING PROTEIN, 47-KD" M6PRBP1 mannose-6-phosphate receptor binding protein 1 Perilipins 678 2004-01-16 2009-08-12 2009-08-12 2014-11-19 10226 ENSG00000105355 OTTHUMG00000180249 uc002mbj.3 AF051314 NM_005817 "CCDS12137|CCDS59337|CCDS59338" O60664 "9590177|6856484|19638644" MGI:1914155 RGD:1595854 PLIN3 602702 +HGNC:29393 PLIN4 perilipin 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 S3-12 KIAA1881 KIAA1881 Perilipins 678 2004-02-12 2009-08-12 2009-08-12 2015-08-25 729359 ENSG00000167676 OTTHUMG00000167571 uc002mar.3 AB067468 XM_170901 CCDS45927 Q96Q06 "11572484|19638644" MGI:1929709 RGD:1590867 PLIN4 613247 +HGNC:33196 PLIN5 perilipin 5 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "LSDP5|LSDA5|OXPAT|MLDP" lipid storage droplet protein 5 Perilipins 678 2009-08-12 2014-11-18 440503 ENSG00000214456 OTTHUMG00000182008 uc002mas.5 DQ839131 NM_001013706 CCDS42473 Q00G26 "17234449|19638644" MGI:1914218 RGD:1589602 PLIN5 613248 +HGNC:9077 PLK1 polo like kinase 1 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 PLK "polo-like kinase (Drosophila)|polo-like kinase 1" 1994-07-25 2004-01-28 2016-01-22 2016-10-05 5347 ENSG00000166851 OTTHUMG00000096984 uc002dlz.2 NM_005030 CCDS10616 P53350 8127874 MGI:97621 RGD:3352 PLK1 602098 objectId:2168 +HGNC:19699 PLK2 polo like kinase 2 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 SNK serum-inducible kinase "polo-like kinase 2 (Drosophila)|polo-like kinase 2" 2004-01-26 2016-01-22 2016-10-05 10769 ENSG00000145632 OTTHUMG00000097047 uc003jrn.4 NM_006622 "CCDS3974|CCDS75250" Q9NYY3 MGI:1099790 RGD:620760 PLK2 607023 objectId:2169 +HGNC:2154 PLK3 polo like kinase 3 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "FNK|PRK" CNK "cytokine-inducible kinase|polo-like kinase 3 (Drosophila)|polo-like kinase 3" 1997-06-12 2004-01-28 2016-01-22 2016-01-22 1263 ENSG00000173846 OTTHUMG00000008491 uc001cmn.4 AJ293866 NM_004073 CCDS515 Q9H4B4 8702627 MGI:109604 RGD:62039 PLK3 602913 objectId:2170 +HGNC:11397 PLK4 polo like kinase 4 protein-coding gene gene with protein product Approved 4q28.1 04q28.1 Sak STK18 "serine/threonine kinase 18|polo-like kinase 4 (Drosophila)|polo-like kinase 4" 1998-12-09 2004-01-28 2016-01-22 2016-01-22 10733 ENSG00000142731 OTTHUMG00000133301 uc003ifo.4 Y13115 XM_017007662 "CCDS3735|CCDS54803|CCDS54804" O00444 MGI:101783 RGD:1305390 PLK4 605031 422336 objectId:2171 +HGNC:27001 PLK5 polo like kinase 5 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 SgK384ps PLK5P "polo-like kinase 5 pseudogene|polo-like kinase 5, pseudogene|polo-like kinase 5" 2008-10-20 2011-07-14 2016-01-22 2016-01-22 126520 ENSG00000185988 OTTHUMG00000180073 uc002ltf.4 DQ424898 NR_026557 CCDS59328 Q496M5 21245385 MGI:3026984 RGD:1305038 PLK5 +HGNC:18553 PLLP plasmolipin protein-coding gene gene with protein product Approved 16q13 16q13 PMLP plasma membrane proteolipid TM4SF11 "transmembrane 4 superfamily member 11 (plasmolipin)|plasma membrane proteolipid (plasmolipin)" 2002-06-10 2005-03-21 2010-06-24 2015-08-25 51090 ENSG00000102934 OTTHUMG00000133465 uc002elg.3 AF137386 NM_015993 CCDS10777 Q9Y342 11707781 MGI:1915051 RGD:621478 PLLP 600340 +HGNC:9080 PLN phospholamban protein-coding gene gene with protein product Approved 6q22.31 06q22.31 CMD1P PLB 1991-08-22 2016-10-12 5350 ENSG00000198523 OTTHUMG00000015462 uc003pye.4 NM_002667 CCDS5120 P26678 1828805 MGI:97622 RGD:619894 LRG_390|http://www.lrg-sequence.org/LRG/LRG_390 PLN 172405 160331 +HGNC:9081 PLOD1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 LH1 lysyl hydroxlase 1 "LLH|PLOD" procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase, Ehlers-Danlos syndrome type VI) 1991-07-11 2004-12-14 2016-04-06 2016-04-06 5351 ENSG00000083444 OTTHUMG00000002393 uc001atm.4 BC016657 NM_000302 CCDS142 Q02809 1577494 MGI:99907 RGD:621382 PLOD1 153454 117888 1.14.11.4 +HGNC:9082 PLOD2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding gene gene with protein product Approved 3q24 03q24 LH2 "lysyl hydroxlase 2|procollagen-lysine 5-dioxygenase" "procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2|procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2" 1996-12-18 2016-04-04 2016-04-04 5352 ENSG00000152952 OTTHUMG00000159417 uc003evr.2 U84573 NM_000935 "CCDS3131|CCDS3132" O00469 9054364 MGI:1347007 RGD:3353 PLOD2 variant database|https://oi.gene.le.ac.uk/home.php?select_db=PLOD2 PLOD2 601865 117892 1.14.11.4 +HGNC:9083 PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 LH3 lysyl hydroxlase 3 1998-09-25 2016-04-06 2016-04-06 8985 ENSG00000106397 OTTHUMG00000157111 uc003uyd.4 AF046889 NM_001084 CCDS5715 O60568 "9724729|9582318" MGI:1347008 RGD:631339 PLOD3 603066 304172 1.14.11.4 +HGNC:9086 PLP1 proteolipid protein 1 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 GPM6C Pelizaeus-Merzbacher disease "SPG2|PLP" spastic paraplegia 2, uncomplicated 2001-06-22 2008-07-28 2016-10-05 5354 ENSG00000123560 OTTHUMG00000022111 uc033epn.2 M27110 NM_001128834 "CCDS14513|CCDS14514" P60201 MGI:97623 RGD:3354 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PLP1 PLP1 300401 117894 +HGNC:9087 PLP2 proteolipid protein 2 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "A4|A4-LSB|MGC126187" A4 differentiation-dependent protein proteolipid protein 2 (colonic epithelium-enriched) 1998-05-05 2016-06-03 2016-06-03 5355 ENSG00000102007 OTTHUMG00000021513 uc004dmx.4 L09604 NM_002668 CCDS14319 Q04941 "8470895|7622043" MGI:1298382 RGD:1587363 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PLP2 PLP2 300112 +HGNC:9228 PLPP1 phospholipid phosphatase 1 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "PAP-2a|LPP1" PPAP2A phosphatidic acid phosphatase type 2A Phospholipid phosphatases 1067 1998-12-02 2015-10-14 2015-10-14 2016-10-05 8611 ENSG00000067113 OTTHUMG00000162240 AB000888 NM_176895 "CCDS34159|CCDS34160" O14494 9305923 MGI:108412 RGD:621832 607124 objectId:1438 3.1.3.4 +HGNC:9230 PLPP2 phospholipid phosphatase 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PAP-2c|LPP2" PPAP2C phosphatidic acid phosphatase type 2C Phospholipid phosphatases 1067 1998-12-02 2015-10-14 2015-10-14 2015-10-14 8612 ENSG00000141934 OTTHUMG00000180530 AF035959 XM_011528396 "CCDS12023|CCDS12024|CCDS45889" O43688 "9570154|9607309" MGI:1354945 RGD:628893 607126 objectId:1440 3.1.3.4 +HGNC:9229 PLPP3 phospholipid phosphatase 3 protein-coding gene gene with protein product Approved 1p32.2 01p32.2 "PAP-2b|LPP3" PPAP2B phosphatidic acid phosphatase type 2B Phospholipid phosphatases 1067 1998-12-02 2015-10-14 2015-10-14 2015-10-14 8613 ENSG00000162407 OTTHUMG00000008160 AB000889 NM_003713 CCDS604 O14495 9305923 MGI:1915166 RGD:620454 607125 objectId:1439 3.1.3.4 +HGNC:23531 PLPP4 phospholipid phosphatase 4 protein-coding gene gene with protein product Approved 10q26.12 10q26.12 DPPL2 diacylglycerol pyrophosphate phosphatase-like 2 "PPAPDC1|PPAPDC1A" "phosphatidic acid phosphatase type 2 domain containing 1|phosphatidic acid phosphatase type 2 domain containing 1A" Phospholipid phosphatases 1067 2004-05-27 2015-10-14 2015-10-14 2016-10-05 196051 ENSG00000203805 OTTHUMG00000019168 AK098668 NM_001030059 CCDS41573 Q5VZY2 17590538 MGI:2685936 RGD:1306289 +HGNC:25026 PLPP5 phospholipid phosphatase 5 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "HTPAP|DPPL1" diacylglycerol pyrophosphate phosphatase-like 1 PPAPDC1B phosphatidic acid phosphatase type 2 domain containing 1B Phospholipid phosphatases 1067 2005-07-15 2015-10-14 2015-10-14 2016-10-05 84513 ENSG00000147535 OTTHUMG00000165104 AF212238 NM_032483 "CCDS47841|CCDS47842|CCDS47843" Q8NEB5 17590538 MGI:1919160 RGD:1591734 610626 +HGNC:23682 PLPP6 phospholipid phosphatase 6 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "FLJ90191|FLJ46512|PDP1" "polyisoprenoid diphosphate phosphatase type 1|presqualene diphosphate phosphatase" PPAPDC2 phosphatidic acid phosphatase type 2 domain containing 2 Phospholipid phosphatases 1067 2005-07-15 2015-10-14 2015-10-14 2016-10-05 403313 ENSG00000205808 OTTHUMG00000019466 AK128369 NM_203453 CCDS34981 Q8IY26 "16464866|20110354" MGI:1921661 RGD:1566000 611666 +HGNC:28174 PLPP7 phospholipid phosphatase 7 (inactive) protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "MGC12921|FLJ14662|NET39" nuclear envelope transmembrane protein NET39 "C9orf67|PPAPDC3" "chromosome 9 open reading frame 67|phosphatidic acid phosphatase type 2 domain containing 3" Phospholipid phosphatases 1067 2004-01-06 2015-10-14 2015-10-14 2016-10-05 84814 ENSG00000160539 OTTHUMG00000020822 AK027568 NM_032728 CCDS6942 Q8NBV4 12958361 MGI:2445183 RGD:1305821 +HGNC:25993 PLPPR1 phospholipid phosphatase related 1 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "PRG-3|MGC26189|FLJ20300|LPPR1" Phospholipid phosphatase related 1127 2015-10-14 2015-10-14 54886 ENSG00000148123 OTTHUMG00000020373 "AY304515|AY337718" NM_017753 CCDS6751 Q8TBJ4 14750979 MGI:2445015 RGD:1303116 +HGNC:29566 PLPPR2 phospholipid phosphatase related 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "LPPR2|PRG-4" Phospholipid phosphatase related 1127 2015-10-14 2015-10-14 64748 ENSG00000105520 OTTHUMG00000182023 AY339628 NM_022737 "CCDS12258|CCDS59352" Q96GM1 14750979 MGI:2384575 RGD:1597171 +HGNC:23497 PLPPR3 phospholipid phosphatase related 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PRG-2|FLJ11535|LPPR3|PRG2" Phospholipid phosphatase related 1127 2015-10-14 2015-10-14 79948 ENSG00000129951 AF541282 NM_024888 "CCDS12043|CCDS58636" Q6T4P5 12730698 MGI:2388640 RGD:727823 610391 +HGNC:23496 PLPPR4 phospholipid phosphatase related 4 protein-coding gene gene with protein product Approved 1p21.3-p21.2 01p21.3-p21.2 "PRG-1|LPPR4|KIAA0455|PHP1" plasticity related gene-1 Phospholipid phosphatase related 1127 2015-10-14 2016-10-11 9890 ENSG00000117600 OTTHUMG00000010763 "AF541281|AB007924" NM_014839 "CCDS757|CCDS53347" Q7Z2D5 12730698 MGI:106530 RGD:727806 607813 +HGNC:31703 PLPPR5 phospholipid phosphatase related 5 protein-coding gene gene with protein product Approved 1p21.3 01p21.3 "PAP2D|PAP2|LPPR5|PRG5" plasticity-related gene 5 Phospholipid phosphatase related 1127 2015-10-14 2015-10-14 163404 ENSG00000117598 OTTHUMG00000010738 "AY574039|AY634620" NM_001037317 "CCDS30778|CCDS30779" Q32ZL2 16010976 MGI:1923019 RGD:1309567 +HGNC:9089 PLRG1 pleiotropic regulator 1 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "PRL1|Prp46|PRPF46|Cwc1|TANGO4" transport and golgi organization 4 homolog (Drosophila) "pleiotropic regulator 1 (PRL1, Arabidopsis homolog)|pleiotropic regulator 1 (PRL1 homolog, Arabidopsis)" WD repeat domain containing 362 1998-03-02 2011-05-19 2016-10-05 5356 ENSG00000171566 OTTHUMG00000161411 uc003iny.4 AF044333 NM_002669 "CCDS34083|CCDS56341" O43660 MGI:1858197 RGD:621047 PLRG1 605961 +HGNC:9090 PLS1 plastin 1 protein-coding gene gene with protein product Approved 3q23 03q23 "I-plastin|Plastin-1" plastin 1 (I isoform) EF-hand domain containing 863 1997-08-18 2010-02-10 2015-03-03 5357 ENSG00000120756 OTTHUMG00000159292 uc010huv.4 L20826 NM_002670 CCDS3125 Q14651 8139549 MGI:104809 RGD:1307142 PLS1 602734 +HGNC:40451 PLS1-AS1 PLS1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q23 03q23 PLS1 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873943 ENSG00000239641 OTTHUMG00000159291 uc062oph.1 +HGNC:9091 PLS3 plastin 3 protein-coding gene gene with protein product Approved Xq23 Xq23 T-plastin plastin 3 (T isoform) EF-hand domain containing 863 1997-08-18 2010-02-10 2015-09-07 5358 ENSG00000102024 OTTHUMG00000022237 uc004eqd.4 L05491 NM_005032 "CCDS14568|CCDS78499" P13797 8428952 MGI:104807 RGD:621409 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PLS3 PLS3 300131 392290 +HGNC:50343 PLS3-AS1 PLS3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq23 Xq23 2014-04-15 2014-04-15 101927352 ENSG00000271826 OTTHUMG00000185326 NR_110384 +HGNC:9092 PLSCR1 phospholipid scramblase 1 protein-coding gene gene with protein product Approved 3q24 03q24 MMTRA1B Phospholipid scramblases 954 1998-06-08 2016-10-05 5359 ENSG00000188313 OTTHUMG00000159427 uc003evx.5 AF098642 NM_021105 CCDS3135 O15162 9218461 MGI:893575 RGD:620521 PLSCR1 604170 +HGNC:16494 PLSCR2 phospholipid scramblase 2 protein-coding gene gene with protein product Approved 3q24 03q24 Phospholipid scramblases 954 2001-09-04 2014-11-18 57047 ENSG00000163746 OTTHUMG00000159429 uc003evv.3 NM_020359 "CCDS56284|CCDS3134|CCDS75029" Q9NRY7 10930526 MGI:1270860 PLSCR2 607610 +HGNC:16495 PLSCR3 phospholipid scramblase 3 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 Phospholipid scramblases 954 2001-09-04 2013-09-23 57048 OTTHUMG00000178169 AF159442 NM_020360 CCDS42253 Q9NRY6 10930526 MGI:1917560 PLSCR3 607611 +HGNC:16497 PLSCR4 phospholipid scramblase 4 protein-coding gene gene with protein product Approved 3q24 03q24 Phospholipid scramblases 954 2001-09-04 2014-11-18 57088 ENSG00000114698 OTTHUMG00000159415 uc003evt.6 AF199023 NM_020353 "CCDS3133|CCDS54651" Q9NRQ2 10930526 MGI:2143267 RGD:1311693 PLSCR4 607612 +HGNC:19952 PLSCR5 phospholipid scramblase family member 5 protein-coding gene gene with protein product Approved 3q24 03q24 phospholipid scramblase family, member 5 Phospholipid scramblases 954 2004-06-28 2015-11-18 2015-11-18 389158 ENSG00000231213 OTTHUMG00000159437 uc062otn.1 AY436642 XM_371670 "CCDS46931|CCDS82853" A0PG75 MGI:3779462 RGD:1564500 PLSCR5 +HGNC:40907 PLSCR5-AS1 PLSCR5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q24 03q24 PLSCR5 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874104 ENSG00000241457 OTTHUMG00000159436 uc062oto.1 +HGNC:9093 PLTP phospholipid transfer protein protein-coding gene gene with protein product Approved 20q13.12 20q13.12 BPIFE BPI fold containing family E BPI fold containing 456 1994-09-16 2014-11-18 5360 ENSG00000100979 OTTHUMG00000033047 uc002xqn.3 L26232 NM_006227 "CCDS13386|CCDS13387|CCDS56196|CCDS56197" P55058 MGI:103151 RGD:1306695 PLTP 172425 +HGNC:13635 PLVAP plasmalemma vesicle associated protein protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "gp68|PV-1|PV1|FELS" fenestrated-endothelial linked structure protein; PV-1 protein 2001-04-27 2015-07-22 83483 ENSG00000130300 OTTHUMG00000182784 uc002ngk.2 AF326591 NM_031310 CCDS32952 Q9BX97 11401446 MGI:1890497 RGD:619971 PLVAP 607647 +HGNC:20945 PLXDC1 plexin domain containing 1 protein-coding gene gene with protein product Approved 17q12 17q12 "TEM3|TEM7" tumor endothelial marker 7 precursor 2003-08-27 2016-10-05 57125 ENSG00000161381 OTTHUMG00000133183 uc002hrg.2 AF279144 NM_020405 CCDS11333 Q8IUK5 "10947988|11559528" MGI:1919574 RGD:1307496 PLXDC1 606826 +HGNC:21013 PLXDC2 plexin domain containing 2 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 "TEM7R|FLJ14623" tumor endothelial marker 7-related precursor 2003-08-27 2016-10-05 84898 ENSG00000120594 OTTHUMG00000017781 uc001iqg.3 AF378757 NM_032812 "CCDS7132|CCDS60497" Q6UX71 11559528 MGI:1914698 RGD:1305962 PLXDC2 606827 +HGNC:9099 PLXNA1 plexin A1 protein-coding gene gene with protein product Approved 3q21.2 03q21.2 NOV PLXN1 Plexins 683 1998-08-13 2016-04-25 5361 ENSG00000114554 OTTHUMG00000044222 uc003ejg.3 X87832 NM_032242 CCDS33847 Q9UIW2 8570614 MGI:107685 RGD:1560871 PLXNA1 601055 +HGNC:9100 PLXNA2 plexin A2 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "OCT|FLJ11751|FLJ30634|KIAA0463" "plexin 2|plexin-A2|semaphorin receptor OCT|transmembrane protein OCT" PLXN2 Plexins 683 1998-08-13 2014-11-18 5362 ENSG00000076356 OTTHUMG00000036564 uc001hgz.4 X87831 NM_025179 CCDS31013 O75051 8570614 MGI:107684 RGD:1305325 PLXNA2 601054 +HGNC:9101 PLXNA3 plexin A3 protein-coding gene gene with protein product Approved Xq28 Xq28 "SEX|XAP-6|6.3|Plxn3" PLXN4 Plexins 683 1998-01-20 2014-11-18 55558 ENSG00000130827 OTTHUMG00000033290 uc004flm.5 X74609 NM_017514 CCDS14752 P51805 "8248200|8733135" MGI:107683 RGD:1584973 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PLXNA3 PLXNA3 300022 +HGNC:9102 PLXNA4 plexin A4 protein-coding gene gene with protein product Approved 7q32.3 07q32.3 "KIAA1550|DKFZp434G0625PRO34003|FAYV2820" "PLXNA4A|PLXNA4B" "plexin A4, A|plexin A4, B" Plexins 683 1999-11-19 2007-09-26 2007-09-26 2014-11-19 91584 ENSG00000221866 OTTHUMG00000155108 uc064ict.1 "AB046770|AK123428" NM_181775 "CCDS5826|CCDS43646|CCDS43647" Q9HCM2 MGI:2179061 RGD:1308074 PLXNA4 604280 +HGNC:9103 PLXNB1 plexin B1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "SEP|KIAA0407" PLXN5 Plexins 683 1998-08-13 2014-11-18 5364 ENSG00000164050 OTTHUMG00000133527 uc003csx.2 X87904 NM_002673 CCDS2765 O43157 "8570614|11035813" MGI:2154238 RGD:1310564 PLXNB1 601053 +HGNC:9104 PLXNB2 plexin B2 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "MM1|KIAA0315|PLEXB2" Plexins 683 1999-11-19 2014-11-18 23654 ENSG00000196576 OTTHUMG00000150219 uc062flc.1 NM_012401 CCDS43035 O15031 "10520995|12183458" MGI:2154239 RGD:1305495 PLXNB2 604293 +HGNC:9105 PLXNB3 plexin B3 protein-coding gene gene with protein product Approved Xq28 Xq28 "PLEXR|PLEXB3" PLXN6 Plexins 683 1998-08-13 2014-11-19 5365 ENSG00000198753 OTTHUMG00000024217 uc004fii.3 AF149019 NM_005393 "CCDS14729|CCDS55536" Q9ULL4 10520995 MGI:2154240 RGD:1560615 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PLXNB3 PLXNB3 300214 +HGNC:9106 PLXNC1 plexin C1 protein-coding gene gene with protein product Approved 12q23 12q23 "VESPR|CD232" "CD molecules|Plexins" "471|683" 1999-11-19 2014-11-18 10154 ENSG00000136040 OTTHUMG00000170235 uc001tdc.3 AF030339 XM_006719186 CCDS9049 O60486 MGI:1890127 RGD:1307420 PLXNC1 604259 CD232 +HGNC:9107 PLXND1 plexin D1 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 KIAA0620 Plexins 683 1999-11-19 2016-10-05 23129 ENSG00000004399 OTTHUMG00000159547 uc003emx.3 AY116661 NM_015103 CCDS33854 Q9Y4D7 12412018 MGI:2154244 RGD:1310796 PLXND1 604282 377069 +HGNC:26518 PM20D1 peptidase M20 domain containing 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "FLJ32569|Cps1" 2007-11-14 2014-11-19 148811 ENSG00000162877 OTTHUMG00000035999 uc001hdj.4 NM_152491 CCDS1460 Q6GTS8 MGI:2442939 RGD:1564063 PM20D1 617124 M20.011 +HGNC:21408 PM20D2 peptidase M20 domain containing 2 protein-coding gene gene with protein product Approved 6q15 06q15 bA63L7.3 β-alanyl-lysine dipeptidase ACY1L2 aminoacylase 1-like 2 2003-06-16 2007-11-14 2007-11-14 2014-11-19 135293 ENSG00000146281 OTTHUMG00000015193 uc003pmz.6 BC035036 NM_001010853 CCDS34499 Q8IYS1 24891507 MGI:2685270 RGD:1307853 PM20D2 615913 M20.021 +HGNC:9108 PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 protein-coding gene gene with protein product Approved 18q21.32 18q21.32 "APR|NOXA" BCL2 homology region 3 (BH3) only 1277 1991-08-12 2014-11-19 5366 ENSG00000141682 OTTHUMG00000132765 uc002lic.3 D90070 NM_021127 CCDS11975 Q13794 "2398525|12879012" MGI:1930146 RGD:1359266 PMAIP1 604959 +HGNC:9109 PMCH pro-melanin concentrating hormone protein-coding gene gene with protein product Approved 12q23.2 12q23.2 MCH pro-melanin-concentrating hormone Endogenous ligands 542 1991-11-08 2015-11-23 2015-11-23 5367 ENSG00000183395 OTTHUMG00000170479 uc001tjl.4 M57703 NM_002674 CCDS31885 P20382 2149166 MGI:97629 RGD:3358 PMCH 176795 +HGNC:9110 PMCHL1 pro-melanin concentrating hormone like 1 (pseudogene) pseudogene pseudogene Approved 5p14.3 05p14.3 "pro-melanin-concentrating hormone-like 1|pro-melanin-concentrating hormone-like 1, pseudogene" 1993-01-13 2015-11-23 2015-11-23 5369 ENSG00000168967 OTTHUMG00000090661 AY008411 NR_003921 Q16048 8188237 176793 PGOHUM00000235529 +HGNC:9111 PMCHL2 pro-melanin concentrating hormone like 2 (pseudogene) pseudogene pseudogene Approved 5q13.2 05q13.2 "pro-melanin-concentrating hormone-like 2|pro-melanin-concentrating hormone-like 2, pseudogene" 1993-01-13 2015-11-23 2015-11-23 5370 ENSG00000169040 OTTHUMG00000099413 AY008413 NR_003922 Q9BQD1 8188237 176794 PGOHUM00000235645 +HGNC:10880 PMEL premelanosome protein protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "D12S53E|SI|Pmel17|gp100" "SIL|SILV" "silver (mouse homolog) like|silver homolog (mouse)" 1997-06-24 2010-12-17 2010-12-17 2016-06-10 6490 ENSG00000185664 OTTHUMG00000170573 uc001sip.4 AK092881 NM_006928 "CCDS8897|CCDS55833|CCDS55834" P40967 8739560 MGI:98301 RGD:1307513 PMEL 155550 +HGNC:14107 PMEPA1 prostate transmembrane protein, androgen induced 1 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 STAG1 solid tumor-associated 1 TMEPAI transmembrane, prostate androgen induced RNA 2000-12-04 2008-04-03 2008-04-03 2016-10-05 56937 ENSG00000124225 OTTHUMG00000032831 uc002xyt.5 AF224278 NM_020182 "CCDS13462|CCDS13463|CCDS13464" Q969W9 10873380 MGI:1929600 RGD:1308255 PMEPA1 606564 +HGNC:9112 PMF1 polyamine modulated factor 1 protein-coding gene gene with protein product Approved 1q22 01q22 MIS12 kinetochore complex 1322 2000-01-31 2016-08-10 2016-08-10 11243 ENSG00000160783 OTTHUMG00000177123 uc001fnq.4 AF141310 NM_007221 "CCDS30886|CCDS55648|CCDS55649" Q6P1K2 10419538 MGI:1914287 RGD:1584694 PMF1 609176 +HGNC:42953 PMF1-BGLAP PMF1-BGLAP readthrough other readthrough Approved 1q22 01q22 2011-09-28 2013-01-23 100527963 ENSG00000260238 OTTHUMG00000014817 uc021pbb.2 NM_001199661 "CCDS55650|CCDS55651|CCDS60299|CCDS72944" MGI:1914287 +HGNC:17728 PMFBP1 polyamine modulated factor 1 binding protein 1 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 2002-05-21 2016-10-05 83449 ENSG00000118557 OTTHUMG00000167827 uc002fcd.4 AF239683 NM_031293 CCDS32483 Q8TBY8 11468771 MGI:1930136 RGD:621677 PMFBP1 +HGNC:9113 PML promyelocytic leukemia protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "MYL|TRIM19|RNF71" "Ring finger proteins|Tripartite motif containing" "58|59" 1991-06-05 2016-10-12 5371 ENSG00000140464 OTTHUMG00000137607 uc002awv.4 AB208950 NM_002675 "CCDS10255|CCDS10256|CCDS10257|CCDS10258|CCDS45297|CCDS45298|CCDS45299|CCDS45300|CCDS58386" P29590 MGI:104662 RGD:1562602 LRG_1069|http://www.lrg-sequence.org/LRG/LRG_1069 PML 102578 117898 +HGNC:9114 PMM1 phosphomannomutase 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 Sec53 brain glucose-1,6-bisphosphatase HAD Asp-based non-protein phosphatases 1045 1996-10-02 2016-10-05 5372 ENSG00000100417 OTTHUMG00000150972 uc003bal.3 NM_002676 CCDS14020 Q92871 "9070917|9271215" MGI:1353418 RGD:1310897 PMM1 601786 5.4.2.8 +HGNC:9115 PMM2 phosphomannomutase 2 protein-coding gene gene with protein product Approved 16p13.2 16p13.2 "CDGS|CDG1a|PMI|PMI1" "phosphomannose isomerase 1|mannose-6-phosphate isomerase" CDG1 HAD Asp-based non-protein phosphatases 1045 1997-05-22 2016-10-05 5373 ENSG00000140650 OTTHUMG00000129697 uc002czf.5 BC008310 NM_000303 CCDS10536 O15305 9140401 MGI:1859214 RGD:1309366 Congenital Disorders of Glycosylation pages|http://www.euroglycanet.org/ PMM2 601785 117903 5.3.1.8 +HGNC:9116 PMM2P1 phosphomannomutase 2 pseudogene 1 pseudogene pseudogene Approved 18p11.22 18p11.22 1998-07-17 2014-11-19 390831 ENSG00000265038 OTTHUMG00000178557 NG_022485 9425221 PGOHUM00000234988 +HGNC:21753 PMM2P2 phosphomannomutase 2 pseudogene 2 pseudogene pseudogene Approved 18p11.21 18p11.21 2010-09-30 2014-11-19 646065 NG_022477 PGOHUM00000234864 +HGNC:9117 PMP2 peripheral myelin protein 2 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "MP2|FABP8|M-FABP" Fatty acid binding protein family 550 1992-11-10 2016-10-05 5375 ENSG00000147588 OTTHUMG00000164600 uc003ycb.3 X62167 NM_002677 CCDS6229 P02689 "1720307|8288226" MGI:102667 RGD:1585218 PMP2 170715 objectId:2544 +HGNC:9118 PMP22 peripheral myelin protein 22 protein-coding gene gene with protein product Approved 17p12 17p12 "HNPP|GAS3|Sp110" 1992-11-05 2016-10-12 5376 ENSG00000109099 OTTHUMG00000058960 uc002gol.5 D11428 NM_000304 "CCDS11168|CCDS82078" Q01453 "8482547|1497668" MGI:97631 RGD:3359 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_263|http://www.lrg-sequence.org/LRG/LRG_263" PMP22 601097 117908 +HGNC:18667 PMPCA peptidase, mitochondrial processing alpha subunit protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "KIAA0123|Alpha-MPP" INPP5E "inositol polyphosphate-5-phosphatase, 72 kD|peptidase (mitochondrial processing) alpha" 2002-05-23 2003-06-20 2016-03-15 2016-03-15 23203 ENSG00000165688 OTTHUMG00000020926 uc004chl.5 D21064 NM_015160 "CCDS35180|CCDS65192" Q10713 "8590280|7788527" MGI:1918568 RGD:727897 PMPCA 613036 434440 +HGNC:51348 PMPCAP1 peptidase, mitochondrial processing alpha subunit pseudogene 1 pseudogene pseudogene Approved 4q22.1 04q22.1 peptidase (mitochondrial processing) alpha pseudogene 1 2014-10-13 2016-03-15 2016-03-15 133083 ENSG00000248817 OTTHUMG00000160921 NG_022020 +HGNC:9119 PMPCB peptidase, mitochondrial processing beta subunit protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MPPB|MPPP52" peptidase (mitochondrial processing) beta 1999-07-22 2016-03-15 2016-03-15 9512 ENSG00000105819 OTTHUMG00000157205 uc003vbl.4 AF054182 NM_004279 CCDS5730 O75439 9653160 MGI:1920328 RGD:621297 PMPCB 603131 M16.003 +HGNC:9120 PMPS entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-01-30 +HGNC:9121 PMS1 PMS1 homolog 1, mismatch repair system component protein-coding gene gene with protein product Approved 2q32.2 02q32.2 MLH2 PMSL1 "postmeiotic segregation increased (S. cerevisiae) 1|PMS1 postmeiotic segregation increased 1 (S. cerevisiae)" MutL homologs 1027 1994-12-13 2015-07-10 2016-10-12 5378 ENSG00000064933 OTTHUMG00000132664 uc010fry.2 NM_000534 "CCDS2302|CCDS46473|CCDS46474|CCDS74615|CCDS82543|CCDS82544" P54277 "8072530|23608172" MGI:1202302 RGD:1359511 "Hereditary Non-Polyposis Colorectal Cancer, HNPCC|http://www.insight-group.org/|Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=PMS1|PMS1 database at LOVD-China|http://genomed.org/LOVD/HNPCC/home.php?select_db=PMS1|LRG_221|http://www.lrg-sequence.org/LRG/LRG_221" PMS1 600258 117913 +HGNC:9122 PMS2 PMS1 homolog 2, mismatch repair system component protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "H_DJ0042M02.9|HNPCC4|MLH4" PMSL2 "postmeiotic segregation increased (S. cerevisiae) 2|PMS2 postmeiotic segregation increased 2 (S. cerevisiae)|PMS1 homolog 2, mismatch repair protein" MutL homologs 1027 1994-12-13 2015-07-10 2016-10-12 5395 ENSG00000122512 OTTHUMG00000023135 uc003spl.4 NM_000535 "CCDS5343|CCDS83155" P54278 8072530 MGI:104288 RGD:1305483 "Hereditary Non-Polyposis Colorectal Cancer, HNPCC|http://www.insight-group.org/|Colon cancer gene variant databases|http://chromium.liacs.nl/LOVD2/colon_cancer/home.php?select_db=PMS2|PMS2 database at LOVD-China|http://genomed.org/LOVD/HNPCC/home.php?select_db=PMS2|LRG_161|http://www.lrg-sequence.org/LRG/LRG_161" PMS2 600259 117916 +HGNC:30061 PMS2CL PMS2 C-terminal like pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 PMS2P13 PMS1 homolog 2, mismatch repair system component pseudogene 13 2007-11-27 2015-07-10 441194 ENSG00000187953 OTTHUMG00000151857 BC041364 NR_002217 Q68D20 "15256438|17253626" +HGNC:9123 PMS2P1 PMS1 homolog 2, mismatch repair system component pseudogene 1 pseudogene pseudogene Approved 7q22.1 07q22.1 "PMS3|PMS8|PMS2L13|PMSR2|PMSR1" "PMS2L6|PMS2L8|PMS2L7|PMS2L1" "postmeiotic segregation increased 2-like 6|postmeiotic segregation increased 2-like 1|postmeiotic segregation increased 2-like 8|postmeiotic segregation increased 2-like 7|postmeiotic segregation increased 2-like 1 pseudogene|postmeiotic segregation increased 2 pseudogene 1" 1997-08-15 2010-10-26 2015-07-10 2015-07-10 5379 ENSG00000078319 OTTHUMG00000156885 D38435 NR_003613 A4D2B8 "8586419|15077197" PMS2P1 605038 +HGNC:9127 PMS2P2 PMS1 homolog 2, mismatch repair system component pseudogene 2 pseudogene pseudogene Approved 7q11.23 07q11.23 PMS4 PMS2L2 "postmeiotic segregation increased 2-like 2|postmeiotic segregation increased 2-like 2 pseudogene|postmeiotic segregation increased 2 pseudogene 2" 1997-08-15 2010-10-26 2015-07-10 2016-08-17 5380 ENSG00000278416 OTTHUMG00000182951 DA215155 NR_003614 O95744 8586419 PGOHUM00000302308 +HGNC:9128 PMS2P3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudogene pseudogene Approved 7q11.23 07q11.23 "PMS5|PMSR3" "PMS2L9|PMS2L3" "postmeiotic segregation increased 2-like 3|postmeiotic segregation increased 2-like 3, pseudogene|postmeiotic segregation increased 2 pseudogene 3" 1997-08-15 2010-10-26 2015-07-10 2015-07-10 5387 ENSG00000127957 OTTHUMG00000156049 D38437 NR_028059 Q13401 8586419 PMS2P3 +HGNC:9129 PMS2P4 PMS1 homolog 2, mismatch repair system component pseudogene 4 pseudogene pseudogene Approved 7q11.21 07q11.21 PMS6 PMS2 pseudogene PMS2L4 "postmeiotic segregation increased 2-like 4|postmeiotic segregation increased 2-like 4 pseudogene|postmeiotic segregation increased 2 pseudogene 4" 1997-08-15 2010-10-26 2015-07-10 2016-10-05 5382 ENSG00000067601 OTTHUMG00000156923 D38438 NR_022007 8586419 PGOHUM00000250872 +HGNC:9130 PMS2P5 PMS1 homolog 2, mismatch repair system component pseudogene 5 pseudogene pseudogene Approved 7q11.23 07q11.23 "PMS7|MGC34222" PMS2L5 "postmeiotic segregation increased 2-like 5|postmeiotic segregation increased 2 pseudogene 5" 1997-08-15 2010-10-26 2015-07-10 2015-07-10 5383 ENSG00000123965 OTTHUMG00000156014 "D38439|D38436" NR_027775 A8MQ11 8586419 PMS2P5 +HGNC:33514 PMS2P6 PMS1 homolog 2, mismatch repair system component pseudogene 6 pseudogene pseudogene Approved 7q11.23 07q11.23 PMS2L14 "postmeiotic segregation increased 2-like 14|postmeiotic segregation increased 2 pseudogene 6" 2009-12-03 2010-10-26 2015-07-10 2016-08-17 729453 ENSG00000174384 OTTHUMG00000157066 AB017005 NG_006449 10101297 PGOHUM00000302801 +HGNC:33515 PMS2P7 PMS1 homolog 2, mismatch repair system component pseudogene 7 pseudogene pseudogene Approved 7q11.23 07q11.23 PMSR7 "PMS2LP2|PMS2L15" "postmeiotic segregation increased 2-like pseudogene 2|postmeiotic segregation increased 2-like 15|postmeiotic segregation increased 2 pseudogene 7" 2009-12-03 2010-10-26 2015-07-10 2015-07-10 100101440 ENSG00000229018 OTTHUMG00000157065 AB017006 NR_130940 10101297 PGOHUM00000302798 +HGNC:33516 PMS2P8 PMS1 homolog 2, mismatch repair system component pseudogene 8 pseudogene pseudogene Approved 7q11.23 07q11.23 PMS2L16 "postmeiotic segregation increased 2-like 16|postmeiotic segregation increased 2 pseudogene 8" 2009-12-03 2010-10-26 2015-07-10 2015-07-10 729299 NG_006447 +HGNC:9135 PMS2P9 PMS1 homolog 2, mismatch repair system component pseudogene 9 pseudogene pseudogene Approved 7q11.23 07q11.23 PMSR5 "PMS2LP1|PMS2L17" "postmeiotic segregation increased 2-like pseudogene 1|postmeiotic segregation increased 2-like 17|postmeiotic segregation increased 2 pseudogene 9" 1997-08-15 2010-10-26 2015-07-10 2016-10-05 100132832 ENSG00000233448 OTTHUMG00000155739 NR_028058 8586419 +HGNC:9124 PMS2P10 PMS1 homolog 2, mismatch repair system component pseudogene 10 pseudogene pseudogene Approved 7q11.23 07q11.23 PMSR4 PMS2L10 "postmeiotic segregation increased 2-like 10|postmeiotic segregation increased 2 pseudogene 10" 1997-08-15 2010-10-26 2015-07-10 2016-08-17 100288713 ENSG00000276840 OTTHUMG00000182947 NG_023454 8586419 PGOHUM00000302307 +HGNC:9125 PMS2P11 PMS1 homolog 2, mismatch repair system component pseudogene 11 pseudogene pseudogene Approved 7q11.23 07q11.23 PMSR6 PMS2L11 "postmeiotic segregation increased 2-like 11|postmeiotic segregation increased 2-like 11 pseudogene|postmeiotic segregation increased 2 pseudogene 11" 1997-08-15 2010-10-26 2015-07-10 2015-07-10 107161145 ENSG00000241350 OTTHUMG00000155730 NG_046688 Q13670 8586419 PMS2P11 PGOHUM00000250955 +HGNC:13641 PMS2P12 PMS1 homolog 2, mismatch repair system component pseudogene 12 pseudogene pseudogene Approved 7q22.1 07q22.1 PMSL12 PMS2L12 "postmeiotic segregation increased 2-like 12|postmeiotic segregation increased 2-like 12 pseudogene|postmeiotic segregation increased 2 pseudogene 12" 2000-09-27 2010-10-26 2015-07-10 2015-07-10 392713 AF030453 NG_009900 9799793 +HGNC:9141 PMVK phosphomevalonate kinase protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "PMK|PMKA|HUMPMKI" 1999-07-09 2014-11-19 10654 ENSG00000163344 OTTHUMG00000037415 uc001ffq.4 L77213 NM_006556 CCDS1073 Q15126 "8663599|10191291" MGI:1915853 RGD:1310812 PMVK 607622 444563 objectId:641 2.7.4.2 +HGNC:13415 PNCK pregnancy up-regulated nonubiquitous CaM kinase protein-coding gene gene with protein product Approved Xq28 Xq28 "MGC45419|CaMK1b" "pregnancy upregulated non-ubiquitously expressed CaM kinase|pregnancy up-regulated non-ubiquitously expressed CaM kinase" 2004-06-25 2013-10-14 2015-07-17 139728 ENSG00000130822 OTTHUMG00000024216 uc065buh.1 BC033746 NM_198452 "CCDS35503|CCDS48189" Q6P2M8 12477932 MGI:1347357 RGD:69249 PNCK 300680 objectId:2172 2.7.11.17 +HGNC:9145 PNI1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9146 PNI2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9147 PNIA1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9148 PNIA2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9149 PNIA3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9150 PNIA4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9151 PNIA5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9152 PNIA6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:21222 PNISR PNN interacting serine and arginine rich protein protein-coding gene gene with protein product Approved 6q16.2 06q16.2 "FLJ14752|bA98I9.2|DKFZp564B0769|SRrp130" "C6orf111|SFRS18" "chromosome 6 open reading frame 111|splicing factor, arginine/serine-rich 18" 2003-11-25 2011-06-06 2016-06-06 2016-10-05 25957 ENSG00000132424 OTTHUMG00000015262 uc003ppo.5 AK027759 NM_032870 CCDS5043 Q8TF01 14578391 MGI:1913875 RGD:1307395 PNISR 616653 +HGNC:9153 PNKD paroxysmal nonkinesigenic dyskinesia protein-coding gene gene with protein product Approved 2q35 02q35 "DYT8|PDC|DKFZp564N1362|FPD1|MR-1|BRP17|FKSG19|TAHCCP2|KIAA1184|KIPP1184|MGC31943|PKND1" myofibrillogenesis regulator 1 paroxysmal nonkinesiogenic dyskinesia 1996-09-13 2007-07-12 2015-07-16 25953 ENSG00000127838 OTTHUMG00000133110 uc002vhn.4 XM_017003771 "CCDS2411|CCDS2413|CCDS42816" Q8N490 8659518 MGI:1930773 RGD:2300155 PNKD 609023 159984 +HGNC:49628 PNKDP1 PNKD pseudogene 1 pseudogene pseudogene Approved Xq26.2 Xq26.2 2014-01-24 2014-01-28 100506715 ENSG00000228089 OTTHUMG00000022418 NG_030161 PGOHUM00000241548 +HGNC:9154 PNKP polynucleotide kinase 3'-phosphatase protein-coding gene gene with protein product Approved 19q13.33 19q13.33 PNK HAD Asp-based non-protein phosphatases 1045 1999-12-22 2016-01-15 11284 ENSG00000039650 OTTHUMG00000183261 uc002pqj.4 AF126486 NM_007254 CCDS12783 Q96T60 "10446192|10446193" MGI:1891698 RGD:1303331 PNKP 605610 229787 +HGNC:21185 PNLDC1 PARN like, ribonuclease domain containing 1 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "FLJ40240|dJ195P10.2" poly(A)-specific ribonuclease (PARN)-like domain containing 1 2003-05-22 2015-11-18 2016-04-25 154197 ENSG00000146453 OTTHUMG00000015941 uc003qsy.3 AK097559 NM_173516 "CCDS5271|CCDS64561" Q8NA58 MGI:2685159 RGD:1308678 PNLDC1 +HGNC:9155 PNLIP pancreatic lipase protein-coding gene gene with protein product Approved 10q25.3 10q25.3 PL Lipases 464 1991-07-24 2015-09-07 5406 ENSG00000175535 OTTHUMG00000019103 uc001lcm.4 BC014309 NM_000936 CCDS7594 P16233 1783385 MGI:97722 RGD:3360 PNLIP 246600 420549 objectId:2590 3.1.1.3 +HGNC:45264 PNLIPP1 pancreatic lipase pseudogene 1 pseudogene pseudogene Approved 10q25.3 10q25.3 2013-03-12 2013-03-12 100419068 ENSG00000232091 OTTHUMG00000019102 NG_025542 PGOHUM00000238931 +HGNC:9156 PNLIPRP1 pancreatic lipase related protein 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 PLRP1 1994-04-28 2016-02-12 2016-10-05 5407 ENSG00000187021 OTTHUMG00000019109 uc001lco.2 BC025784 NM_006229 CCDS7595 P54315 1379598 MGI:97723 RGD:620792 PNLIPRP1 604422 +HGNC:9157 PNLIPRP2 pancreatic lipase related protein 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 10q25.3 10q25.3 PLRP2 pancreatic lipase related protein 2 Lipases 464 1994-04-28 2016-02-12 2016-02-12 5408 ENSG00000266200 OTTHUMG00000181599 uc031wuh.2 M93284 NM_005396 P54317 1379598 MGI:1336202 RGD:620793 PNLIPRP2 604423 3.1.1.3 +HGNC:23492 PNLIPRP3 pancreatic lipase related protein 3 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 Lipases 464 2004-05-27 2016-02-12 2016-10-05 119548 ENSG00000203837 OTTHUMG00000019100 uc001lcl.5 BC015840 XM_058404 CCDS31292 Q17RR3 PNLIPRP3 3.1.1.3 +HGNC:9158 PNMA1 paraneoplastic Ma antigen 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 MA1 paraneoplastic antigen MA1 Paraneoplastic Ma antigens 671 1999-09-17 2012-02-09 2014-11-19 9240 ENSG00000176903 OTTHUMG00000169183 uc001xor.2 AF037364 NM_006029 CCDS9818 Q8ND90 10050892 MGI:2180564 RGD:621230 PNMA1 604010 +HGNC:9159 PNMA2 paraneoplastic Ma antigen 2 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "MA2|RGAG2" paraneoplastic antigen MA2 Paraneoplastic Ma antigens 671 1999-09-17 2012-02-09 2016-10-05 10687 ENSG00000240694 OTTHUMG00000163816 uc003xez.3 NM_007257 CCDS34868 Q9UL42 10362822 MGI:2444129 RGD:1307266 PNMA2 603970 +HGNC:18742 PNMA3 paraneoplastic Ma antigen 3 protein-coding gene gene with protein product Approved Xq28 Xq28 "MA5|MA3|MGC132756|MGC132758" paraneoplastic cancer-testis-brain antigen paraneoplastic antigen MA3 Paraneoplastic Ma antigens 671 2002-08-01 2012-02-09 2014-11-19 29944 ENSG00000183837 OTTHUMG00000024195 uc033far.2 AF083116 NM_013364 "CCDS35435|CCDS65344" Q9UL41 11558790 MGI:2180565 RGD:1563752 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PNMA3 PNMA3 300675 +HGNC:18743 PNMA5 paraneoplastic Ma antigen family member 5 protein-coding gene gene with protein product Approved Xq28 Xq28 KIAA1934 paraneoplastic antigen family 5 paraneoplastic antigen like 5 Paraneoplastic Ma antigens 671 2002-08-01 2012-02-09 2014-11-19 114824 ENSG00000198883 OTTHUMG00000024184 uc022chm.2 AB067521 NM_052926 CCDS14718 Q96PV4 16214224 MGI:2180566 RGD:1565857 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PNMA5 PNMA5 300916 +HGNC:28248 PNMA6A paraneoplastic Ma antigen family member 6A protein-coding gene gene with protein product Approved Xq28 Xq28 MGC15827 PNMA6C "paraneoplastic antigen like 6A|paraneoplastic Ma antigen family member 6C|paraneoplastic antigen like 6C" Paraneoplastic Ma antigens 671 2004-06-17 2012-02-09 2014-11-19 84968 ENSG00000235961 OTTHUMG00000186485 uc011myl.4 AK055322 NM_032882 CCDS14719 P0CW24 14702039 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PNMA6A PNMA6A 300917 +HGNC:26681 PNMA6B paraneoplastic Ma antigen family member 6B (pseudogene) pseudogene pseudogene Approved Xq28 Xq28 PNMA6D "paraneoplastic antigen like 6B|paraneoplastic Ma antigen family member 6B|paraneoplastic Ma antigen family member 6D (pseudogene)|paraneoplastic antigen like 6D|paraneoplastic Ma antigen family member 6D" Paraneoplastic Ma antigens 671 2006-07-04 2013-07-19 2014-11-19 728513 ENSG00000268883 OTTHUMG00000186486 NG_033733 +HGNC:25578 PNMAL1 paraneoplastic Ma antigen family like 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "KIAA1183L|FLJ10781" PNMA-like 1 Paraneoplastic Ma antigens 671 2007-12-13 2016-06-22 2016-07-26 55228 ENSG00000182013 OTTHUMG00000169421 uc002peq.5 BC026026 NM_018215 "CCDS33059|CCDS46124" Q86V59 12477932 MGI:1918941 RGD:1310803 PNMAL1 +HGNC:29206 PNMAL2 paraneoplastic Ma antigen family like 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 KIAA1183 PNMA-like 2 Paraneoplastic Ma antigens 671 2007-12-13 2016-07-26 2016-07-26 57469 ENSG00000204851 OTTHUMG00000183426 uc002pes.3 AB033009 NM_020709 CCDS59400 Q9ULN7 10574461 MGI:3645856 RGD:1560435 PNMAL2 +HGNC:9160 PNMT phenylethanolamine N-methyltransferase protein-coding gene gene with protein product Approved 17q12 17q12 PENT 1988-08-12 2015-08-25 5409 ENSG00000141744 OTTHUMG00000133209 uc002hsi.3 NM_002686 CCDS11343 P11086 3372503 MGI:97724 RGD:3361 PNMT 171190 objectId:2496 2.1.1.28 +HGNC:9161 PNMTP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-04-16 +HGNC:9162 PNN pinin, desmosome associated protein protein-coding gene gene with protein product Approved 14q21.1 14q21.1 memA 1997-12-10 2014-11-19 5411 ENSG00000100941 OTTHUMG00000028821 uc001wuw.5 U77718 NM_002687 CCDS9671 Q9H307 8922384 MGI:1100514 RGD:1597086 PNN 603154 +HGNC:32790 PNO1 partner of NOB1 homolog protein-coding gene gene with protein product Approved 2p14 02p14 RRP20 RNA binding protein KHRBP1 "KH-type RNA binding protein 1|KH-type RNA-binding protein 1|partner of NOB1 homolog (S. cerevisiae)" 2006-11-06 2015-07-09 2015-07-09 56902 ENSG00000115946 OTTHUMG00000129563 uc002seh.5 AF164799 NM_020143 CCDS1885 Q9NRX1 15497447 MGI:1913499 RGD:727882 PNO1 +HGNC:9163 PNOC prepronociceptin protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "PPNOC|N/OFQ|NOP" "nocistatin|orphanin FQ" Endogenous ligands 542 1996-05-28 2016-10-05 5368 ENSG00000168081 OTTHUMG00000102125 uc003xgp.5 NM_006228 "CCDS6066|CCDS64862" Q13519 "8710928|10101606" MGI:105308 RGD:3362 PNOC 601459 +HGNC:7892 PNP purine nucleoside phosphorylase protein-coding gene gene with protein product Approved 14q11.2 14q11.2 PUNP NP nucleoside phosphorylase 2001-06-22 2009-12-02 2009-12-02 2016-10-12 4860 ENSG00000198805 OTTHUMG00000029546 uc001vxo.5 NM_000270.2 CCDS9552 P00491 6087295 "MGI:97365|MGI:3712328" RGD:1597189 "NPbase: Mutation registry for PNP deficiency|http://structure.bmc.lu.se/idbase/NPbase/|LRG_91|http://www.lrg-sequence.org/LRG/LRG_91" PNP 164050 123864 objectId:2841 2.4.2.1 +HGNC:21246 PNPLA1 patatin like phospholipase domain containing 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "FLJ38755|dJ50J22.1" patatin-like phospholipase domain containing 1 Patatin like phospholipase domain containing 466 2003-05-29 2015-11-23 2015-11-23 285848 ENSG00000180316 OTTHUMG00000014590 uc003olw.2 NM_173676 "CCDS34438|CCDS47416|CCDS54997" Q8N8W4 "16799181|19029121" MGI:3617850 RGD:1306685 PNPLA1 612121 322097 +HGNC:30802 PNPLA2 patatin like phospholipase domain containing 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "desnutrin|TTS-2.2|ATGL|FP17548|iPLA2zeta" patatin-like phospholipase domain containing 2 "Lipases|Patatin like phospholipase domain containing" "464|466" 2004-09-06 2015-11-23 2015-11-23 57104 ENSG00000177666 OTTHUMG00000133309 uc001lrt.4 AJ278475 NM_020376 CCDS7718 Q96AD5 "8619474|16799181|19029121" MGI:1914103 RGD:1309044 PNPLA2 609059 138475 3.1.1.3 +HGNC:18590 PNPLA3 patatin like phospholipase domain containing 3 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "dJ796I17.1|FLJ22012|adiponutrin|iPLA2epsilon" "C22orf20|ADPN" "chromosome 22 open reading frame 20|adiponutrin|patatin-like phospholipase domain containing 3" "Lipases|Patatin like phospholipase domain containing" "464|466" 2002-04-29 2006-05-26 2015-11-23 2015-11-23 80339 ENSG00000100344 OTTHUMG00000150555 uc003bei.1 NM_025225 CCDS14054 Q9NST1 "16799181|19029121" MGI:2151796 RGD:1595843 PNPLA3 609567 305021 3.1.1.3 +HGNC:24887 PNPLA4 patatin like phospholipase domain containing 4 protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 "DXS1283E|GS2|iPLA2eta" patatin-like phospholipase domain containing 4 Patatin like phospholipase domain containing 466 2004-09-06 2015-11-23 2016-10-05 8228 ENSG00000006757 OTTHUMG00000021103 uc011mhq.2 U03886 NM_004650 "CCDS14129|CCDS55368" P41247 "7806223|16799181|19029121" RGD:1562200 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PNPLA4 PNPLA4 300102 3.1.1.3 +HGNC:38085 PNPLA4P1 patatin like phospholipase domain containing 4 pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 patatin-like phospholipase domain containing 4 pseudogene 1 2010-04-12 2015-11-23 2015-11-23 100462832 ENSG00000235451 OTTHUMG00000036403 NG_024801 PGOHUM00000233963 +HGNC:24888 PNPLA5 patatin like phospholipase domain containing 5 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "dJ388M5.4|GS2L" patatin-like phospholipase domain containing 5 Patatin like phospholipase domain containing 466 2004-09-06 2015-11-23 2015-11-23 150379 ENSG00000100341 OTTHUMG00000030779 uc062eyk.1 Z97055 NM_138814 "CCDS14053|CCDS54537" Q7Z6Z6 "16799181|19029121" MGI:1923022 RGD:1307495 PNPLA5 611589 +HGNC:16268 PNPLA6 patatin like phospholipase domain containing 6 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "NTE|sws|iPLA2delta|SPG39" neuropathy target esterase patatin-like phospholipase domain containing 6 Patatin like phospholipase domain containing 466 2006-07-05 2015-11-23 2015-11-23 10908 ENSG00000032444 OTTHUMG00000182094 uc002mgq.3 AJ004832 NM_006702 "CCDS32891|CCDS54206|CCDS54207|CCDS59343" Q8IY17 "9576844|16799181|19029121" MGI:1354723 RGD:1564611 PNPLA6 603197 158087 +HGNC:24768 PNPLA7 patatin like phospholipase domain containing 7 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "FLJ43070|FLJ31318|FLJ44279|RP11-48C7.2|NTEL1|NTE-R1" C9orf111 "chromosome 9 open reading frame 111|patatin-like phospholipase domain containing 7" Patatin like phospholipase domain containing 466 2004-03-25 2006-06-12 2015-11-23 2015-11-23 375775 ENSG00000130653 OTTHUMG00000020990 uc004cnf.3 AK126267 NM_152286 "CCDS7045|CCDS48070" Q6ZV29 "16799181|12640454|19029121" MGI:2385325 RGD:708466 PNPLA7 612122 +HGNC:28900 PNPLA8 patatin like phospholipase domain containing 8 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 "IPLA2G|IPLA2-2|iPLA2gamma" patatin-like phospholipase domain containing 8 Patatin like phospholipase domain containing 466 2006-06-12 2015-11-23 2016-10-05 50640 ENSG00000135241 OTTHUMG00000154870 uc003vfj.3 AF217519 NM_015723 "CCDS34733|CCDS59075|CCDS59508" Q9NP80 "10744668|10833412|16799181|19029121" MGI:1914702 RGD:1311444 PNPLA8 612123 +HGNC:32928 PNPLA10P patatin like phospholipase domain containing 10 pseudogene pseudogene pseudogene Approved Xq25 Xq25 patatin-like phospholipase domain containing 10 pseudogene Patatin like phospholipase domain containing 466 2006-06-12 2015-11-23 2015-11-23 643773 XM_927062 16799181 +HGNC:30260 PNPO pyridoxamine 5'-phosphate oxidase protein-coding gene gene with protein product Approved 17q21.32 17q21.32 PDXPO pyridoxine 5'-phosphate oxidase 2004-11-22 2006-07-12 2014-11-19 55163 ENSG00000108439 OTTHUMG00000178295 uc002imo.4 AF468030 NM_018129 CCDS11522 Q9NVS9 "9601034|15182361" MGI:2144151 RGD:621456 PNPO 603287 160333 1.4.3.5 +HGNC:23166 PNPT1 polyribonucleotide nucleotidyltransferase 1 protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "PNPase|OLD35|old-35" "polynucleotide phosphorylase|3'-5' RNA exonuclease" DFNB70 deafness, autosomal recessive 70 2003-09-25 2016-10-05 87178 ENSG00000138035 OTTHUMG00000129335 uc002rzf.4 BC053660 NM_033109 CCDS1856 Q8TCS8 12419256 MGI:1918951 RGD:1307987 PNPT1 610316 317560 +HGNC:44468 PNPT1P1 polyribonucleotide nucleotidyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 3p26.2 03p26.2 2012-11-01 2016-10-05 100288506 ENSG00000229241 OTTHUMG00000155238 NG_022194 PGOHUM00000264296 +HGNC:44469 PNPT1P2 polyribonucleotide nucleotidyltransferase 1 pseudogene 2 pseudogene pseudogene Approved 7q31.32 07q31.32 2012-11-01 2013-05-20 100533721 ENSG00000233272 OTTHUMG00000157056 NG_028676 PGOHUM00000264371 +HGNC:17278 PNRC1 proline rich nuclear receptor coactivator 1 protein-coding gene gene with protein product Approved 6q15 06q15 "B4-2|PRR2" PROL2 "proline rich 2|proline-rich nuclear receptor coactivator 1" 2002-01-03 2003-09-26 2015-11-23 2016-10-05 10957 ENSG00000146278 OTTHUMG00000015191 uc003pmv.4 U03105 NM_006813 CCDS5018 Q12796 7578250 MGI:1917838 RGD:628753 PNRC1 606714 +HGNC:23158 PNRC2 proline rich nuclear receptor coactivator 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 proline-rich nuclear receptor coactivator 2 2003-09-25 2015-11-23 2015-11-23 55629 ENSG00000189266 OTTHUMG00000013891 uc001big.4 AF151042 NM_017761 CCDS246 Q9NPJ4 11574675 MGI:106512 RGD:1642418 PNRC2 611882 +HGNC:51933 PNRC2P1 proline rich nuclear receptor coactivator 2 pseudogene 1 pseudogene pseudogene Approved 1p12 01p12 proline-rich nuclear receptor coactivator 2 pseudogene 1 2015-10-06 2015-11-23 2015-11-23 100131261 ENSG00000228217 OTTHUMG00000013705 NG_023333 +HGNC:9166 PNY1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9167 PNY2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9168 PNY3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9169 PNY4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9170 PNY5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:24488 POC1A POC1 centriolar protein A protein-coding gene gene with protein product Approved 3p21.2 03p21.2 DKFZP434C245 WDR51A "WD repeat domain 51A|POC1 centriolar protein homolog A (Chlamydomonas)" WD repeat domain containing 362 2005-02-01 2010-03-26 2013-08-21 2014-11-18 25886 ENSG00000164087 OTTHUMG00000157817 uc003dcu.4 AL117629 NM_015426 "CCDS2846|CCDS54591|CCDS54592" Q8NBT0 "19109428|22840364" MGI:1917485 RGD:1565004 POC1A 614783 316081 +HGNC:30836 POC1B POC1 centriolar protein B protein-coding gene gene with protein product Approved 12q21.33 12q21.33 "TUWD12|FLJ14923" WDR51B "WD repeat domain 51B|POC1 centriolar protein homolog B (Chlamydomonas)" WD repeat domain containing 362 2005-02-01 2010-03-26 2013-08-21 2015-09-21 282809 ENSG00000139323 OTTHUMG00000169944 uc001tbc.4 AL832918 NM_172240 "CCDS31869|CCDS55859" Q8TC44 19109428 MGI:1918511 RGD:2323942 POC1B 614784 410502 +HGNC:42957 POC1B-GALNT4 POC1B-GALNT4 readthrough other readthrough Approved 12q21.33 12q21.33 2011-09-28 2014-11-18 100528030 ENSG00000259075 OTTHUMG00000171333 uc001tbe.4 NM_001199782 CCDS55860 +HGNC:26658 POC5 POC5 centriolar protein protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "FLJ35779|MGC120442|MGC120443|MGC120444|hPOC5" C5orf37 "chromosome 5 open reading frame 37|POC5 centriolar protein homolog (Chlamydomonas)" 2007-02-06 2010-03-26 2013-08-05 2013-08-05 134359 ENSG00000152359 OTTHUMG00000162487 uc003keh.5 AK093098 NM_152408 "CCDS47236|CCDS47237" Q8NA72 19349582 MGI:1914713 RGD:1310597 POC5 +HGNC:23174 PODN podocan protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "PCAN|PODOCAN|MGC24995|SLRR5A" podocan proteoglycan Small leucine rich repeat proteoglycans 573 2003-10-15 2014-11-19 127435 ENSG00000174348 OTTHUMG00000008934 uc001cuv.4 AY313607 NM_153703 "CCDS573|CCDS55601|CCDS55602" Q7Z5L7 MGI:2674939 RGD:7545693 PODN 608661 +HGNC:26275 PODNL1 podocan like 1 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "FLJ23447|SLRR5B" 2006-08-21 2016-06-22 2016-06-22 79883 ENSG00000132000 OTTHUMG00000181853 uc002mxr.4 AK027100 NM_024825 "CCDS12300|CCDS54225|CCDS54226" Q6PEZ8 12477932 MGI:2685352 RGD:1307753 PODNL1 +HGNC:9171 PODXL podocalyxin like protein-coding gene gene with protein product Approved 7q32.3 07q32.3 "PCLP|Gp200|PC" podocalyxin-like 1997-07-11 2016-01-27 2016-10-05 5420 ENSG00000128567 OTTHUMG00000154918 uc003vqw.5 NM_001018111 "CCDS34755|CCDS47714" O00592 MGI:1351317 RGD:621878 PODXL 602632 +HGNC:17936 PODXL2 podocalyxin like 2 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "PODLX2|endoglycan" endoglycan podocalyxin-like 2 2004-07-21 2016-01-27 2016-01-27 50512 ENSG00000114631 OTTHUMG00000159642 uc003ejq.4 AF219137 NM_015720 CCDS3044 Q9NZ53 10722749 MGI:2442488 RGD:1305815 PODXL2 616627 +HGNC:13711 POF1B premature ovarian failure, 1B protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "POF|FLJ22792" 2004-06-01 2016-10-05 79983 ENSG00000124429 OTTHUMG00000021934 uc004eer.3 BC017500 NM_024921 "CCDS14452|CCDS78497" Q8WVV4 11299520 MGI:1916943 RGD:1560798 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=POF1B POF1B 300603 117921 +HGNC:14988 POFUT1 protein O-fucosyltransferase 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "O-FUT|O-Fuc-T|KIAA0180|FUT12" "peptide-O-fucosyltransferase|GDP-fucose protein O-fucosyltransferase 1" Fucosyltransferases 434 2001-10-29 2016-10-05 23509 ENSG00000101346 OTTHUMG00000133268 uc002wxp.4 AF375884 NM_015352 "CCDS13198|CCDS13199" Q9H488 "9023546|9525914" MGI:2153207 RGD:1303001 POFUT1 607491 357019 2.4.1.221 +HGNC:14683 POFUT2 protein O-fucosyltransferase 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KIAA0958|FUT13" "peptide-O-fucosyltransferase|GDP-fucose protein O-fucosyltransferase 2" C21orf80 chromosome 21 open reading frame 80 Fucosyltransferases 434 2001-08-24 2004-06-09 2004-06-07 2014-11-19 23275 ENSG00000186866 OTTHUMG00000084874 uc002zhc.4 AJ203079 NM_015227 "CCDS13719|CCDS13721" Q9Y2G5 MGI:1916863 RGD:1307334 POFUT2 610249 2.4.1.221 +HGNC:18800 POGK pogo transposable element with KRAB domain protein-coding gene gene with protein product Approved 1q24.1 01q24.1 "KIAA15131|LST003|BASS2|KRBOX2" KRAB box domain containing 2 Helix-turn-helix CENPB type domain containing 533 2002-08-29 2016-10-05 57645 ENSG00000143157 OTTHUMG00000034325 uc001gdt.2 AB040946 NM_017542 CCDS1254 Q9P215 MGI:1918842 RGD:1308951 POGK 1146 +HGNC:22954 POGLUT1 protein O-glucosyltransferase 1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "MDS010|MGC32995|9630046K23Rik|MDSRP|hCLP46|KDELCL1|Rumi" KDELC family like 1 "C3orf9|KTELC1" "chromosome 3 open reading frame 9|KTEL (Lys-Tyr-Glu-Leu) containing 1" Glycosyltransferase family 90 443 2005-11-28 2010-09-29 2010-09-29 2014-11-19 56983 ENSG00000163389 OTTHUMG00000159379 uc003ecm.4 BC030614 NM_152305 CCDS2988 Q8NBL1 16524674 MGI:2444232 RGD:1306248 POGLUT1 615618 391813 +HGNC:18801 POGZ pogo transposable element with ZNF domain protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "KIAA0461|ZNF635m|ZNF280E" "zinc finger protein 280E|putative protein product of Nbla00003" Helix-turn-helix CENPB type domain containing 533 2002-08-29 2016-10-05 23126 ENSG00000143442 OTTHUMG00000012499 uc001eyd.2 AB007930 NM_207171 "CCDS44222|CCDS53365|CCDS53366|CCDS997|CCDS998" Q7Z3K3 10976766 MGI:2442117 RGD:1309980 POGZ 614787 +HGNC:9173 POLA1 DNA polymerase alpha 1, catalytic subunit protein-coding gene gene with protein product Approved Xp22.11-p21.3 Xp22.11-p21.3 p180 "POLA|NSX" "polymerase (DNA directed), alpha|N syndrome (mental retardation, malformations, chromosome breakage)|polymerase (DNA) alpha 1, catalytic subunit" DNA polymerases 535 2001-06-22 2006-09-26 2016-07-11 2016-10-11 5422 ENSG00000101868 OTTHUMG00000021277 uc004dbl.4 NM_016937 "CCDS14214|CCDS83462" P09884 1689958 MGI:99660 RGD:621816 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=POLA1 POLA1 312040 460832 2.7.7.7 +HGNC:30073 POLA2 DNA polymerase alpha 2, accessory subunit protein-coding gene gene with protein product Approved 11q13.1 11q13.1 FLJ21662 "DNA polymerase alpha subunit B|DNA polymerase alpha 70 kDa subunit" "polymerase (DNA directed), alpha 2 (70kD subunit)|polymerase (DNA) alpha 2, accessory subunit" DNA polymerases 535 2005-01-10 2016-07-11 2016-10-05 23649 ENSG00000014138 OTTHUMG00000165951 uc001odj.4 BC002990 NM_002689 CCDS8098 Q14181 "8223465|11433027" MGI:99690 RGD:621817 POLA2 +HGNC:9174 POLB DNA polymerase beta protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "polymerase (DNA directed), beta|polymerase (DNA) beta" DNA polymerases 535 2001-06-22 2016-07-11 2016-07-11 5423 ENSG00000070501 OTTHUMG00000164093 uc003xoz.3 NM_002690 CCDS6129 P06746 MGI:97740 RGD:3363 POLB 174760 2.7.7.7 +HGNC:9175 POLD1 DNA polymerase delta 1, catalytic subunit protein-coding gene gene with protein product Approved 19q13.3 19q13.3 CDC2 CDC2 homolog (S. cerevisiae) POLD "polymerase (DNA directed), delta 1, catalytic subunit (125kD)|polymerase (DNA) delta 1, catalytic subunit" DNA polymerases 535 1992-02-06 2016-07-26 2016-10-12 5424 ENSG00000062822 OTTHUMG00000183037 uc002psb.6 XM_017026881 "CCDS12795|CCDS82381" P28340 1722322 MGI:97741 RGD:621839 LRG_785|http://www.lrg-sequence.org/LRG/LRG_785 POLD1 174761 365133 +HGNC:9176 POLD2 DNA polymerase delta 2, accessory subunit protein-coding gene gene with protein product Approved 7p13 07p13 "Pol delta B subunit (p50)|DNA polymerase delta subunit p50" "polymerase (DNA directed), delta 2, regulatory subunit (50kD)|polymerase (DNA directed), delta 2, regulatory subunit 50kDa|polymerase (DNA) delta 2, accessory subunit" DNA polymerases 535 1995-05-30 2016-07-26 2016-07-26 5425 ENSG00000106628 OTTHUMG00000022909 uc010kxz.5 NM_001127218 "CCDS5477|CCDS75586" P49005 8530069 MGI:1097163 RGD:1304954 POLD2 600815 +HGNC:41522 POLD2P1 DNA polymerase delta 2, accessory subunit pseudogene 1 pseudogene pseudogene Approved 5q15 05q15 "polymerase (DNA directed), delta 2, regulatory subunit 50kDa pseudogene 1|polymerase (DNA) delta 2, accessory subunit pseudogene 1" 2011-05-04 2016-07-11 2016-07-11 391811 ENSG00000213730 OTTHUMG00000162647 NG_021890 PGOHUM00000235694 +HGNC:20932 POLD3 DNA polymerase delta 3, accessory subunit protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "P66|KIAA0039|P68|PPP1R128" "DNA polymerase delta subunit p66|Pol delta C subunit (p66)|protein phosphatase 1, regulatory subunit 128" "polymerase (DNA-directed), delta 3, accessory subunit|polymerase (DNA) delta 3, accessory subunit" "DNA polymerases|Protein phosphatase 1 regulatory subunits" "535|694" 2003-12-10 2016-07-11 2016-10-05 10714 ENSG00000077514 OTTHUMG00000165621 uc001ovf.3 D26018 NM_006591 CCDS8233 Q15054 10219083 MGI:1915217 RGD:1312027 POLD3 611415 +HGNC:14106 POLD4 DNA polymerase delta 4, accessory subunit protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "p12|POLDS" DNA polymerase delta smallest subunit p12 "polymerase (DNA-directed), delta 4, accessory subunit|polymerase (DNA) delta 4, accessory subunit" DNA polymerases 535 2000-12-04 2016-07-11 2016-10-05 57804 ENSG00000175482 OTTHUMG00000167135 uc001okm.5 AF179890 NM_021173 "CCDS8158|CCDS58149" Q9HCU8 10751307 MGI:1916995 RGD:1308519 POLD4 611525 +HGNC:23781 POLDIP2 DNA polymerase delta interacting protein 2 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "PDIP38|DKFZP586F1524" polymerase (DNA-directed), delta interacting protein 2 2004-01-27 2016-07-11 2016-07-11 26073 ENSG00000004142 OTTHUMG00000132065 uc032ezc.2 AF077203 NM_015584 "CCDS74018|CCDS76978" Q9Y2S7 12522211 MGI:1915061 RGD:1307022 611519 +HGNC:23782 POLDIP3 DNA polymerase delta interacting protein 3 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "PDIP46|KIAA1649" polymerase (DNA-directed), delta interacting protein 3 RNA binding motif containing 725 2004-01-27 2016-07-11 2016-10-05 84271 ENSG00000100227 OTTHUMG00000150887 uc003bcu.4 NM_032311 "CCDS14038|CCDS14039|CCDS74873" Q9BY77 12522211 MGI:1921076 RGD:1311073 POLDIP3 611520 +HGNC:9177 POLE DNA polymerase epsilon, catalytic subunit protein-coding gene gene with protein product Approved 12q24.33 12q24.33 POLE1 DNA polymerase epsilon catalytic subunit A "polymerase (DNA directed), epsilon|polymerase (DNA) epsilon, catalytic subunit" DNA polymerases 535 1992-02-06 2016-07-11 2016-10-12 5426 ENSG00000177084 OTTHUMG00000168045 uc001uks.3 NM_006231 CCDS9278 Q07864 8020968 MGI:1196391 RGD:1594540 LRG_789|http://www.lrg-sequence.org/LRG/LRG_789 POLE 174762 356190 +HGNC:9178 POLE2 DNA polymerase epsilon 2, accessory subunit protein-coding gene gene with protein product Approved 14q21.3 14q21.3 DPE2 DNA polymerase epsilon subunit B "polymerase (DNA directed), epsilon 2 (p59 subunit)|polymerase (DNA) epsilon 2, accessory subunit" DNA polymerases 535 1998-07-03 2016-07-11 2016-10-05 5427 ENSG00000100479 OTTHUMG00000170813 uc001wwu.4 AF025840 NM_002692 "CCDS32073|CCDS55914|CCDS55915" P56282 "9405441|9443964" MGI:1197514 RGD:1311962 POLE2 602670 +HGNC:13546 POLE3 DNA polymerase epsilon 3, accessory subunit protein-coding gene gene with protein product Approved 9q32 09q32 "CHRAC17|Ybl1|p17|CHARAC17" "histone fold protein CHRAC17|DNA polymerase epsilon p17 subunit|chromatin accessibility complex 17|arsenic transactivated protein" "polymerase (DNA directed), epsilon 3 (p17 subunit)|polymerase (DNA) epsilon 3, accessory subunit" "DNA polymerases|ATAC complex" "535|1058" 2001-09-21 2016-07-11 2016-10-05 54107 ENSG00000148229 OTTHUMG00000020523 uc004bhn.4 AF261689 NM_017443 CCDS6795 Q9NRF9 "10801849|10880450" MGI:1933378 RGD:1359475 POLE3 607267 +HGNC:18755 POLE4 DNA polymerase epsilon 4, accessory subunit protein-coding gene gene with protein product Approved 2p12 02p12 p12 "polymerase (DNA-directed), epsilon 4 (p12 subunit)|polymerase (DNA) epsilon 4, accessory subunit" DNA polymerases 535 2002-07-08 2016-07-11 2016-07-11 56655 ENSG00000115350 OTTHUMG00000129971 uc002snf.4 AF261688 NM_019896 CCDS1957 Q9NR33 10801849 MGI:1914229 RGD:1307793 POLE4 607269 +HGNC:9179 POLG DNA polymerase gamma, catalytic subunit protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "POLG1|POLGA" "polymerase (DNA directed), gamma|polymerase (DNA) gamma, catalytic subunit" DNA polymerases 535 1992-02-06 2016-07-11 2016-10-12 5428 ENSG00000140521 OTTHUMG00000149646 uc002bns.5 X98093 NM_002693 CCDS10350 P54098 9465903 MGI:1196389 RGD:620057 LRG_765|http://www.lrg-sequence.org/LRG/LRG_765 POLG 174763 117925 +HGNC:9180 POLG2 DNA polymerase gamma 2, accessory subunit protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "MTPOLB|HP55" "polymerase (DNA directed), gamma 2, accessory subunit|polymerase (DNA) gamma 2, accessory subunit" DNA polymerases 535 1999-09-16 2016-07-11 2016-07-11 11232 ENSG00000256525 OTTHUMG00000178899 uc002jei.4 U94703 NM_007215 CCDS32706 Q9UHN1 9153213 MGI:1354947 RGD:1305128 POLG2 604983 117927 +HGNC:9181 POLH DNA polymerase eta protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "RAD30A|XP-V" "polymerase (DNA directed), eta|polymerase (DNA) eta" Xeroderma pigmentosum complementation groups 1125 1997-09-12 2016-07-11 2016-10-12 5429 ENSG00000170734 OTTHUMG00000014743 uc003ovq.5 AB024313 NM_006502 "CCDS4902|CCDS78147" Q9Y253 "10385124|10398605" MGI:1891457 RGD:1309893 LRG_470|http://www.lrg-sequence.org/LRG/LRG_470 POLH 603968 117931 +HGNC:43967 POLHP1 DNA polymerase eta pseudogene 1 pseudogene pseudogene Approved 2q35 02q35 "polymerase (DNA directed), eta pseudogene 1|polymerase (DNA) eta pseudogene 1" 2012-05-18 2016-07-11 2016-07-11 106480782 ENSG00000232970 OTTHUMG00000154829 NG_045122 PGOHUM00000240518 +HGNC:9182 POLI DNA polymerase iota protein-coding gene gene with protein product Approved 18q21.2 18q21.2 "RAD3OB|RAD30B" "polymerase (DNA directed) iota|polymerase (DNA) iota" DNA polymerases 535 2000-01-24 2016-07-11 2016-10-05 11201 ENSG00000101751 OTTHUMG00000132704 uc002lfj.5 NM_007195 CCDS11954 Q9UNA4 17609217 MGI:1347081 RGD:1305212 POLI 605252 +HGNC:9183 POLK DNA polymerase kappa protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "POLQ|DINP" "DINB protein|DNA polymerase kappa" DINB1 "polymerase (DNA directed) kappa|polymerase (DNA) kappa" DNA polymerases 535 2000-08-11 2016-07-11 2016-10-05 51426 ENSG00000122008 OTTHUMG00000102107 uc003kdw.4 AB027564 NM_016218 CCDS4030 Q9UBT6 "10887153|10518552" MGI:1349767 RGD:620058 POLK 605650 +HGNC:9184 POLL DNA polymerase lambda protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "polymerase (DNA directed), lambda|polymerase (DNA) lambda" DNA polymerases 535 2000-02-16 2016-07-11 2016-10-05 27343 ENSG00000166169 OTTHUMG00000018933 uc001kti.3 AF161019 NM_013274 "CCDS7513|CCDS76332" Q9UGP5 17686665 MGI:1889000 RGD:1308053 POLL 606343 +HGNC:9185 POLM DNA polymerase mu protein-coding gene gene with protein product Approved 7p13 07p13 Tdt-N Pol iota "polymerase (DNA directed), mu|polymerase (DNA) mu" DNA polymerases 535 2000-02-16 2016-07-11 2016-07-11 27434 ENSG00000122678 OTTHUMG00000155353 uc003tjt.5 AF176097 NM_013284 "CCDS34625|CCDS64635|CCDS64636" Q9NP87 10982892 MGI:1860191 RGD:1308247 POLM 606344 +HGNC:18870 POLN DNA polymerase nu protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "polymerase (DNA directed) nu|polymerase (DNA) nu" DNA polymerases 535 2003-10-03 2016-07-11 2016-07-11 353497 ENSG00000130997 OTTHUMG00000090081 uc062uoj.1 AF044578 NM_181808 CCDS3360 Q7Z5Q5 12794064 MGI:2675617 RGD:7675413 POLN 610887 +HGNC:9186 POLQ DNA polymerase theta protein-coding gene gene with protein product Approved 3q13.33 03q13.33 POLH "polymerase (DNA directed), theta|polymerase (DNA) theta" DNA polymerases 535 1999-04-15 2016-07-11 2016-10-05 10721 ENSG00000051341 OTTHUMG00000159396 uc003eee.5 AF052573 NM_199420 CCDS33833 O75417 10395804 MGI:2155399 RGD:1309795 POLQ 604419 2.7.7.7 +HGNC:17264 POLR1A RNA polymerase I subunit A protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "DKFZP586M0122|FLJ21915|RPO1-4|RPA1" polymerase (RNA) I polypeptide A, 194kDa RNA polymerase subunits 726 2003-04-01 2016-07-11 2016-07-11 25885 ENSG00000068654 OTTHUMG00000153165 uc002sqs.4 AK025568 NM_015425 CCDS42706 O95602 9236775 MGI:1096397 RGD:620824 POLR1A 616404 457098 +HGNC:20454 POLR1B RNA polymerase I subunit B protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "Rpo1-2|FLJ21921|FLJ10816|RPA2" polymerase (RNA) I polypeptide B, 128kDa RNA polymerase subunits 726 2003-04-01 2016-07-11 2016-10-05 84172 ENSG00000125630 OTTHUMG00000131314 uc002thw.4 AK001678 NM_019014 "CCDS2097|CCDS46395|CCDS62988|CCDS62989|CCDS62990" Q9H9Y6 MGI:108014 RGD:620822 POLR1B 602000 +HGNC:20194 POLR1C RNA polymerase I subunit C protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "RPA40|RPA39|RPA5|RPAC1" polymerase (RNA) I polypeptide C, 30kDa RNA polymerase subunits 726 2003-04-01 2016-07-11 2016-07-11 9533 ENSG00000171453 OTTHUMG00000014739 uc003ovn.4 AF008442 NM_004875 CCDS4901 O15160 "11042152|12446911" MGI:103288 RGD:1309689 POLR1C 610060 250183 +HGNC:20422 POLR1D RNA polymerase I subunit D protein-coding gene gene with protein product Approved 13q12.2 13q12.2 "RPAC2|RPA16|RPO1-3|RPA9|MGC9850" polymerase (RNA) I polypeptide D, 16kDa RNA polymerase subunits 726 2003-04-01 2016-07-11 2016-07-11 51082 ENSG00000186184 OTTHUMG00000016635 uc001uro.4 "AF077044|BC018528" "NM_015972|NM_152705" "CCDS9324|CCDS9325|CCDS73555" Q9Y2S0 "11042152|12391170" MGI:108403 RGD:1564358 POLR1D 613715 250168 +HGNC:17631 POLR1E RNA polymerase I subunit E protein-coding gene gene with protein product Approved 9p13.2 09p13.2 "FLJ13390|PAF53|FLJ13970" RNA polymerase I associated factor 53 PRAF1 "polymerase (RNA) I associated factor 1|polymerase (RNA) I polypeptide E, 53kDa" RNA polymerase subunits 726 2005-07-11 2006-03-09 2016-07-11 2016-10-05 64425 ENSG00000137054 OTTHUMG00000019920 uc003zzy.2 AK091294 NM_022490 CCDS6611 Q9GZS1 8641287 MGI:1929022 RGD:1565773 POLR1E +HGNC:9187 POLR2A RNA polymerase II subunit A protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "POLRA|RPB1" "DNA-directed RNA polymerase II largest subunit, RNA polymerase II 220 kd subunit|RNA polymerase II subunit B1" POLR2 polymerase (RNA) II (DNA directed) polypeptide A, 220kDa RNA polymerase subunits 726 1986-01-01 2016-07-11 2016-07-11 5430 ENSG00000181222 OTTHUMG00000177594 uc060apt.1 NM_000937 P24928 MGI:98086 RGD:1587326 POLR2A 180660 2.7.7.6 +HGNC:9188 POLR2B RNA polymerase II subunit B protein-coding gene gene with protein product Approved 4q12 04q12 RPB2 polymerase (RNA) II (DNA directed) polypeptide B (140kD) RNA polymerase subunits 726 1992-10-21 2016-07-11 2016-07-11 5431 ENSG00000047315 OTTHUMG00000128771 uc062wwb.1 NM_000938 "CCDS3511|CCDS77915|CCDS77916" P30876 "1518060|8034326" MGI:2388280 RGD:1309477 POLR2B 180661 +HGNC:9189 POLR2C RNA polymerase II subunit C protein-coding gene gene with protein product Approved 16q21 16q21 RPB3 RNA polymerase II subunit 3 polymerase (RNA) II (DNA directed) polypeptide C (33kD) RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-10-05 5432 ENSG00000102978 OTTHUMG00000133464 uc002elt.2 NM_032940 CCDS10782 P19387 8034326 MGI:109299 RGD:1306935 POLR2C 180663 +HGNC:9190 POLR2CP1 RNA polymerase II subunit C pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 POLR2CP polymerase (RNA) II (DNA directed) polypeptide C, pseudogene 2000-05-23 2016-03-01 2016-07-11 2016-07-11 54038 ENSG00000228600 OTTHUMG00000074316 NG_000915 PGOHUM00000239146 +HGNC:9191 POLR2D RNA polymerase II subunit D protein-coding gene gene with protein product Approved 2q14.3 02q14.3 RBP4 RNA polymerase II subunit hsRBP4 polymerase (RNA) II (DNA directed) polypeptide D RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-10-05 5433 ENSG00000144231 OTTHUMG00000131531 uc002tpj.4 U85510 NM_004805 CCDS2151 O15514 9528765 MGI:1916491 RGD:1308565 POLR2D 606017 +HGNC:9192 POLR2E RNA polymerase II subunit E protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "RPB5|RPABC1|XAP4|hRPB25|hsRPB5" DNA directed RNA polymerase II 23 kda polypeptide polymerase (RNA) II (DNA directed) polypeptide E (25kD) RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-07-11 5434 ENSG00000099817 OTTHUMG00000181873 uc002lre.5 NM_002695 CCDS12056 P19388 8034326 MGI:1913670 RGD:1589817 POLR2E 180664 +HGNC:9193 POLR2F RNA polymerase II subunit F protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "RPB6|HRBP14.4" DNA directed RNA polymerase II 14.4 kda polypeptide polymerase (RNA) II (DNA directed) polypeptide F RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-07-11 5435 ENSG00000100142 OTTHUMG00000151160 uc003aul.4 NM_021974 "CCDS13963|CCDS77673" P61218 8786150 MGI:1349393 RGD:708567 POLR2F 604414 +HGNC:9194 POLR2G RNA polymerase II subunit G protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "hRPB19|hsRPB7|RPB7" polymerase (RNA) II (DNA directed) polypeptide G RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-10-05 5436 ENSG00000168002 OTTHUMG00000167609 uc001nva.4 U20659 NM_002696 CCDS31585 P62487 "7579693|9256063" MGI:1914960 RGD:621284 POLR2G 602013 +HGNC:9195 POLR2H RNA polymerase II subunit H protein-coding gene gene with protein product Approved 3q27.1 03q27.1 RPB8 polymerase (RNA) II (DNA directed) polypeptide H RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-10-05 5437 ENSG00000163882 OTTHUMG00000156746 uc062qvy.1 NM_006232 "CCDS3264|CCDS63861|CCDS63862|CCDS63859|CCDS63860" P52434 MGI:2384309 RGD:1561203 POLR2H 606023 +HGNC:9196 POLR2I RNA polymerase II subunit I protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "RPB9|hRPB14.5" polymerase (RNA) II (DNA directed) polypeptide I (14.5kD) RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-07-11 5438 ENSG00000105258 OTTHUMG00000181749 uc002ode.4 NM_006233 CCDS12487 P36954 8034326 MGI:1917170 RGD:1309395 POLR2I 180662 2.7.7.6 +HGNC:9197 POLR2J RNA polymerase II subunit J protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "RPB11|hRPB14|RPB11A|RPB11m|POLR2J1" polymerase (RNA) II (DNA directed) polypeptide J (13.3kD) RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-10-05 5439 ENSG00000005075 OTTHUMG00000150387 uc003uzp.2 X98433 NM_006234 CCDS5724 P52435 MGI:109582 RGD:1310198 POLR2J 604150 +HGNC:23208 POLR2J2 RNA polymerase II subunit J2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 RPB11b1 polymerase (RNA) II (DNA directed) polypeptide J2 RNA polymerase subunits 726 2008-08-20 2016-07-11 2016-07-11 246721 ENSG00000228049 OTTHUMG00000150388 uc022ajl.3 NM_032959 CCDS43627 Q9GZM3 15586814 POLR2J2 609881 +HGNC:33853 POLR2J3 RNA polymerase II subunit J3 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 polymerase (RNA) II (DNA directed) polypeptide J3 RNA polymerase subunits 726 2008-08-21 2016-07-11 2016-07-11 548644 ENSG00000168255 OTTHUMG00000150384 uc064gop.1 NM_001097615 CCDS47673 Q9H1A7 15586814 POLR2J3 +HGNC:28195 POLR2J4 RNA polymerase II subunit J4, pseudogene pseudogene pseudogene Approved 7p13 07p13 MGC13098 polymerase (RNA) II (DNA directed) polypeptide J4, pseudogene 2008-08-21 2016-07-11 2016-07-11 84820 ENSG00000272655 OTTHUMG00000155253 uc003tjc.2 NR_003655 15586814 +HGNC:9198 POLR2K RNA polymerase II subunit K protein-coding gene gene with protein product Approved 8q22.2 08q22.2 RPB10alpha polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-10-05 5440 ENSG00000147669 OTTHUMG00000164705 uc003yjf.4 NM_005034 CCDS6285 P53803 MGI:102725 RGD:2319895 POLR2K 606033 +HGNC:42650 POLR2KP1 RNA polymerase II subunit K pseudogene 1 pseudogene pseudogene Approved 12q13.12 12q13.12 polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 1 2011-08-10 2016-07-11 2016-07-11 100874515 ENSG00000258284 OTTHUMG00000169587 NG_032528 PGOHUM00000239769 +HGNC:42652 POLR2KP2 RNA polymerase II subunit K pseudogene 2 pseudogene pseudogene Approved 13q14.2 13q14.2 polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa pseudogene 2 2011-08-10 2016-07-11 2016-07-11 100129174 ENSG00000224510 OTTHUMG00000016892 NG_027665 PGOHUM00000256722 +HGNC:9199 POLR2L RNA polymerase II subunit L protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "RPB10beta|RBP10|RPABC5|RPB7.6|hRPB7.6|hsRPB10b" polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa RNA polymerase subunits 726 1993-12-07 2016-07-11 2016-10-05 5441 ENSG00000177700 OTTHUMG00000133316 uc001lsc.4 U37690 NM_021128 CCDS7720 P62875 8786124 MGI:1913741 RGD:1566209 POLR2L 601189 +HGNC:31340 POLR2LP1 RNA polymerase II subunit L pseudogene 1 pseudogene pseudogene Approved 6p21.33 06p21.33 AB023060.6 POLR2LP polymerase (RNA) II (DNA directed) polypeptide L pseudogene 2004-11-25 2016-03-01 2016-07-11 2016-07-11 493825 ENSG00000238211 OTTHUMG00000031249 NG_032026 PGOHUM00000301748 +HGNC:14862 POLR2M RNA polymerase II subunit M protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "Gdown|Gdown1|GCOM1" GRINL1A "glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A|polymerase (RNA) II (DNA directed) polypeptide M|polymerase (RNA) II subunit M" RNA polymerase subunits 726 2001-03-28 2011-11-07 2016-07-11 2016-07-11 81488 ENSG00000255529 OTTHUMG00000166486 uc002aet.6 AF326773 NM_015532 "CCDS32252|CCDS42045" "P0CAP2|Q6EEV4" "16769904|22850672" MGI:107282 RGD:619847 POLR2M 606485 +HGNC:30074 POLR3A RNA polymerase III subunit A protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "RPC1|RPC155|hRPC155" polymerase (RNA) III (DNA directed) polypeptide A, 155kDa RNA polymerase subunits 726 2004-09-16 2016-07-11 2016-07-11 11128 ENSG00000148606 OTTHUMG00000018550 uc001jzn.4 AF021351 NM_007055 CCDS7354 O14802 "9331371|12391170" MGI:2681836 RGD:1305574 POLR3A 614258 285106 +HGNC:30348 POLR3B RNA polymerase III subunit B protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "RPC2|FLJ10388" polymerase (RNA) III (DNA directed) polypeptide B RNA polymerase subunits 726 2004-04-21 2016-07-11 2016-07-11 55703 ENSG00000013503 OTTHUMG00000170077 uc001tlp.3 AY092084 NM_018082 "CCDS9105|CCDS53824" Q9NW08 12391170 MGI:1917678 RGD:1565311 POLR3B 614366 285118 +HGNC:30076 POLR3C RNA polymerase III subunit C protein-coding gene gene with protein product Approved 1q21.1 01q21.1 "RPC62|RPC3" polymerase (RNA) III (DNA directed) polypeptide C (62kD) RNA polymerase subunits 726 2004-04-21 2016-07-11 2016-10-05 10623 ENSG00000186141 OTTHUMG00000013753 uc001eoh.3 AJ238234 NM_006468 CCDS72864 Q9BUI4 "9171375|12391170" MGI:1921664 RGD:1311545 POLR3C +HGNC:1080 POLR3D RNA polymerase III subunit D protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "TSBN51|RPC4" BN51T "BN51 (BHK21) temperature sensitivity complementing|polymerase (RNA) III (DNA directed) polypeptide D, 44kDa" RNA polymerase subunits 726 1989-05-25 2003-04-04 2016-07-11 2016-10-05 661 ENSG00000168495 OTTHUMG00000163778 uc003xbm.4 M17754 NM_001722 CCDS34858 P05423 "12391170|11279001" MGI:1914315 RGD:1311816 POLR3D 187280 +HGNC:45107 POLR3DP1 RNA polymerase III subunit D pseudogene 1 pseudogene pseudogene Approved 10q22.2 10q22.2 polymerase (RNA) III (DNA directed) polypeptide D, 44kDa pseudogene 1 2013-02-15 2016-07-11 2016-07-11 100422384 ENSG00000214626 OTTHUMG00000018507 NG_025523 PGOHUM00000238845 +HGNC:30347 POLR3E RNA polymerase III subunit E protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "RPC5|SIN|FLJ10509" polymerase (RNA) III (DNA directed) polypeptide E (80kD) RNA polymerase subunits 726 2004-04-22 2016-07-11 2016-10-05 55718 ENSG00000058600 OTTHUMG00000094779 uc002dkk.5 AY092085 NM_018119 "CCDS10605|CCDS58432|CCDS58433|CCDS58434|CCDS73845" Q9NVU0 "10819331|10521666" MGI:1349452 RGD:1308086 POLR3E +HGNC:15763 POLR3F RNA polymerase III subunit F protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "RPC39|RPC6" RNA polymerase III C39 subunit polymerase (RNA) III (DNA directed) polypeptide F (39 kDa) RNA polymerase subunits 726 2001-09-17 2016-07-11 2016-07-11 10621 ENSG00000132664 OTTHUMG00000031971 uc002wqv.5 U93869 NM_006466 CCDS13135 Q9H1D9 9171375 MGI:1924086 RGD:1306428 POLR3F +HGNC:30075 POLR3G RNA polymerase III subunit G protein-coding gene gene with protein product Approved 5q14.3 05q14.3 "RPC32|RPC7" polymerase (RNA) III (DNA directed) polypeptide G (32kD) RNA polymerase subunits 726 2004-04-21 2016-07-11 2016-07-11 10622 ENSG00000113356 OTTHUMG00000162809 uc003kjq.3 U93868 NM_006467 CCDS43337 O15318 "9171375|12391170" MGI:1914736 RGD:1593792 POLR3G +HGNC:28466 POLR3GL RNA polymerase III subunit G like protein-coding gene gene with protein product Approved 1q21.1 01q21.1 "flj32422|MGC3200" polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like 2005-02-02 2016-07-11 2016-07-11 84265 ENSG00000121851 OTTHUMG00000013739 uc001enp.1 BC004355 NM_032305 "CCDS72875|CCDS81367" Q9BT43 12477932 MGI:1917120 RGD:1582857 POLR3GL +HGNC:23345 POLR3GP1 RNA polymerase III subunit G pseudogene 1 pseudogene pseudogene Approved 14q32.12 14q32.12 polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 1 2014-06-05 2016-07-11 2016-07-11 100422395 ENSG00000268295 OTTHUMG00000183872 NG_027301 PGOHUM00000250113 +HGNC:50691 POLR3GP2 RNA polymerase III subunit G pseudogene 2 pseudogene pseudogene Approved 18q21.1 18q21.1 polymerase (RNA) III (DNA directed) polypeptide G (32kD) pseudogene 2 2014-06-05 2016-07-11 2016-07-11 100422391 ENSG00000266984 OTTHUMG00000180324 NG_026328 PGOHUM00000249934 +HGNC:30349 POLR3H RNA polymerase III subunit H protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "RPC8|KIAA1665" polymerase (RNA) III (DNA directed) polypeptide H (22.9kD) RNA polymerase subunits 726 2004-04-21 2016-07-11 2016-10-05 171568 ENSG00000100413 OTTHUMG00000150971 uc003baf.5 AB051452 NM_138338 "CCDS14018|CCDS33651" Q9Y535 "11258795|12391170" MGI:1926179 RGD:1305889 POLR3H +HGNC:14121 POLR3K RNA polymerase III subunit K protein-coding gene gene with protein product Approved 16p13.3 16p13.3 RPC11 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa RNA polymerase subunits 726 2000-12-21 2016-07-11 2016-07-11 51728 ENSG00000161980 OTTHUMG00000060722 uc002cfi.3 AF051316 NM_016310 CCDS10395 Q9Y2Y1 "9869639|10079944" MGI:1914255 RGD:1587294 POLR3K 606007 +HGNC:39577 POLR3KP1 RNA polymerase III subunit K pseudogene 1 pseudogene pseudogene Approved 13q21.2 13q21.2 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 1 2011-03-15 2016-07-11 2016-07-11 100289667 ENSG00000232647 OTTHUMG00000017001 NG_023354 PGOHUM00000248413 +HGNC:39578 POLR3KP2 RNA polymerase III subunit K pseudogene 2 pseudogene pseudogene Approved 17q25.1 17q25.1 polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa pseudogene 2 2011-03-15 2016-07-11 2016-07-11 390811 ENSG00000265469 OTTHUMG00000178342 NG_023353 PGOHUM00000237174 +HGNC:9200 POLRMT RNA polymerase mitochondrial protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "h-mtRPOL|APOLMT|MTRNAP|MTRPOL" "polymerase (RNA) mitochondrial (DNA directed)|polymerase (RNA) mitochondrial" 1997-07-11 2016-07-11 2016-07-11 5442 ENSG00000099821 OTTHUMG00000180611 uc002lpf.3 NM_005035 CCDS12036 O00411 9097968 MGI:1915843 RGD:1304599 POLRMT 601778 2.7.7.6 +HGNC:28865 POLRMTP1 RNA polymerase mitochondrial pseudogene 1 pseudogene pseudogene Approved 17q23.2 17q23.2 POLRMTL "polymerase (RNA) mitochondrial (DNA directed)-like|polymerase (RNA) mitochondrial (DNA directed) pseudogene 1|polymerase (RNA) mitochondrial pseudogene 1" 2005-04-11 2010-10-22 2016-07-11 2016-07-11 284167 ENSG00000266066 OTTHUMG00000179254 NG_011773 PGOHUM00000237133 +HGNC:19702 POM121 POM121 transmembrane nucleoporin protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "KIAA0618|DKFZP586G1822|DKFZP586P2220|POM121A" "POM121 membrane glycoprotein (rat)|POM121 membrane glycoprotein" Nucleoporins 1051 2002-11-13 2012-03-13 2014-11-19 9883 ENSG00000196313 OTTHUMG00000023527 uc031sxs.3 AB014518 XM_017012853 "CCDS5542|CCDS59059" Q96HA1 "8335683|9734811|17900573" MGI:2137624 RGD:620680 POM121 615753 1150 +HGNC:34004 POM121B POM121 transmembrane nucleoporin B (pseudogene) pseudogene pseudogene Approved 7q11.23 07q11.23 POM121 membrane glycoprotein B (pseudogene) 2008-02-27 2012-03-13 2014-11-19 100288540 ENSG00000205578 OTTHUMG00000156802 NG_013116.1 A6NF01 17900573 PGOHUM00000250945 +HGNC:34005 POM121C POM121 transmembrane nucleoporin C protein-coding gene gene with protein product Approved 7q11.23 07q11.23 POM121 membrane glycoprotein C 2008-02-27 2012-03-13 2015-09-08 100101267 ENSG00000272391 OTTHUMG00000156238 uc032ztq.2 NM_001099415 CCDS47617 A8CG34 17900573 MGI:2137624 POM121C 615754 +HGNC:16439 POM121L1P POM121 transmembrane nucleoporin like 1, pseudogene pseudogene pseudogene Approved 22q11.22 22q11.22 POM121-like 2 POM121L1 "POM121 membrane glycoprotein-like 1 (rat)|POM121 membrane glycoprotein-like 1, pseudogene|POM121 transmembrane nucleoporin-like 1, pseudogene" 2002-04-30 2009-01-15 2015-11-23 2015-11-23 25812 ENSG00000183169 OTTHUMG00000151169 NR_024591 Q3SYA9 9074928 +HGNC:13973 POM121L2 POM121 transmembrane nucleoporin like 2 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 POM121-L "POM121 membrane glycoprotein-like 2 (rat)|POM121 membrane glycoprotein-like 2|POM121 transmembrane nucleoporin-like 2" 2001-07-20 2015-11-23 2016-10-05 94026 ENSG00000158553 OTTHUMG00000014475 uc011dku.2 AL021808 NM_033482 CCDS59497 Q96KW2 MGI:2684870 RGD:1594366 POM121L2 +HGNC:16440 POM121L3P POM121 transmembrane nucleoporin like 3, pseudogene pseudogene pseudogene Approved 20p11.21 20p11.21 dJ831C21.3 POM121L3 "POM121 membrane glycoprotein (rat homolog)-like 3|POM121 membrane glycoprotein-like 3 (rat)|POM121 membrane glycoprotein-like 3 pseudogene|POM121 membrane glycoprotein-like 3, pseudogene|POM121 transmembrane nucleoporin-like 3, pseudogene" 2001-09-17 2009-01-15 2015-11-23 2016-10-05 651452 ENSG00000167390 OTTHUMG00000032093 AL133466 NM_152863 +HGNC:19326 POM121L4P POM121 transmembrane nucleoporin like 4, pseudogene pseudogene pseudogene Approved 22q11.2 22q11.2 "POM121 membrane glycoprotein-like 4 pseudogene (rat)|POM121 membrane glycoprotein-like 4 pseudogene|POM121 transmembrane nucleoporin-like 4 pseudogene" 2002-10-03 2015-11-23 2015-11-23 266697 ENSG00000217261 OTTHUMG00000150756 NR_024592 POM121L4P +HGNC:31343 POM121L6P POM121 transmembrane nucleoporin like 6, pseudogene pseudogene pseudogene Approved 6p22.2 06p22.2 bA239L20.2 "POM121 membrane glycoprotein-like 6 pseudogene (rat)|POM121 membrane glycoprotein-like 6 pseudogene" 2004-03-02 2015-11-23 2016-10-05 729392 ENSG00000243307 OTTHUMG00000150352 NG_008948 PGOHUM00000250199 +HGNC:35444 POM121L7P POM121 transmembrane nucleoporin like 7 pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 POM121L7 "POM121 membrane glycoprotein-like 7|POM121 transmembrane nucleoporin-like 7|POM121 transmembrane nucleoporin like 7" 2009-01-15 2016-09-28 2016-09-28 2016-09-28 728418 ENSG00000239511 OTTHUMG00000150783 uc062bxq.1 NG_009026 +HGNC:35446 POM121L8P POM121 transmembrane nucleoporin like 8, pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 "POM121 membrane glycoprotein-like 8 pseudogene|POM121 transmembrane nucleoporin-like 8 pseudogene" 2009-01-15 2015-11-23 2016-10-05 29797 ENSG00000229266 OTTHUMG00000150759 "AK292222|AK302597" NR_024583 +HGNC:30080 POM121L9P POM121 transmembrane nucleoporin like 9, pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 "POM121 membrane glycoprotein-like 9, pseudogene|POM121 transmembrane nucleoporin-like 9, pseudogene" 2009-01-15 2015-11-23 2016-10-05 29774 ENSG00000128262 OTTHUMG00000150763 "AL040062|AL117401" NM_014549 +HGNC:35448 POM121L10P POM121 transmembrane nucleoporin like 10, pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 "POM121 membrane glycoprotein-like 10, pseudogene|POM121 transmembrane nucleoporin-like 10, pseudogene" 2009-01-15 2015-11-23 2015-11-23 646074 ENSG00000224124 OTTHUMG00000150732 BX648116 NR_024593 +HGNC:35447 POM121L11P POM121 transmembrane nucleoporin like 11, pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 LOC100129643 "POM121 membrane glycoprotein-like 11, pseudogene|POM121 transmembrane nucleoporin-like 11, pseudogene" 2009-01-28 2015-11-23 2015-11-23 100129643 XM_001719478 +HGNC:25369 POM121L12 POM121 transmembrane nucleoporin like 12 protein-coding gene gene with protein product Approved 7p12.1 07p12.1 DKFZp564N2472 "POM121 membrane glycoprotein-like 12|POM121 transmembrane nucleoporin-like 12" 2009-05-07 2015-11-23 2015-11-23 285877 ENSG00000221900 OTTHUMG00000155995 uc003tpz.4 NM_182595 CCDS43584 Q8N7R1 RGD:2320735 POM121L12 +HGNC:42635 POM121L13P POM121 transmembrane nucleoporin like 13, pseudogene pseudogene pseudogene Approved 13q12.3 13q12.3 "POM121 membrane glycoprotein-like 13, pseudogene|POM121 transmembrane nucleoporin-like 13, pseudogene" 2011-09-05 2015-11-23 2015-11-23 100874379 ENSG00000236339 OTTHUMG00000016653 NG_032518 PGOHUM00000249941 +HGNC:44414 POM121L14P POM121 transmembrane nucleoporin like 14, pseudogene pseudogene pseudogene Approved 6p11.2 06p11.2 POM121 transmembrane nucleoporin-like 14, pseudogene 2012-10-05 2015-11-23 2015-11-23 727805 ENSG00000218189 OTTHUMG00000014926 PGOHUM00000243651 +HGNC:9201 POMC proopiomelanocortin protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "MSH|POC|CLIP|ACTH|NPP|LPH" "adrenocorticotropin|beta-lipotropin|alpha-melanocyte stimulating hormone|beta-melanocyte stimulating hormone|beta-endorphin|adrenocorticotropic hormone|opiomelanocortin prepropeptide" Endogenous ligands 542 1986-01-01 2008-07-31 2016-10-05 5443 ENSG00000115138 OTTHUMG00000094764 uc002rga.2 NM_001035256 CCDS1717 P01189 "6254047|9620771" MGI:97742 RGD:3366 POMC 176830 123421 +HGNC:19139 POMGNT1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "FLJ20277|MGAT1.2|LGMD2O" protein O-mannose beta-1,2-N-acetylglucosaminyltransferase MEB "muscle-eye-brain disease|protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase" O-linked N-acetylglucosaminyltransferases 446 2005-06-02 2013-07-31 2016-10-12 55624 ENSG00000085998 OTTHUMG00000007604 uc001cpe.4 NM_017739 "CCDS531|CCDS57995" Q8WZA1 "11742540|12788071" MGI:1915523 RGD:1359396 "POMGNT1 @ LOVD|http://www.LOVD.nl/POMGNT1|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=POMGNT1|LRG_701|http://www.lrg-sequence.org/LRG/LRG_701" POMGNT1 606822 117935 2.4.1.- +HGNC:25902 POMGNT2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "FLJ14566|AGO61" "C3orf39|GTDC2" "chromosome 3 open reading frame 39|glycosyltransferase-like domain containing 2" O-linked N-acetylglucosaminyltransferases 446 2006-01-06 2013-08-22 2013-08-22 2014-11-19 84892 ENSG00000144647 OTTHUMG00000133038 AK092147 NM_032806 CCDS2709 Q8NAT1 12477932 MGI:2143424 RGD:1304827 614828 310474 +HGNC:26267 POMK protein-O-mannose kinase protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "FLJ23356|SgK196" 2013-08-22 2015-08-25 84197 ENSG00000185900 OTTHUMG00000164100 NM_032237 CCDS6141 Q9H5K3 "16879967|23519211" MGI:1921903 RGD:1310810 615247 352646 +HGNC:20330 POMP proteasome maturation protein protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "HSPC014|UMP1" proteassemblin C13orf12 chromosome 13 open reading frame 12 2003-01-29 2006-07-04 2006-07-04 2016-10-05 51371 ENSG00000132963 OTTHUMG00000016652 uc001usf.4 AF077200 NM_015932 CCDS9331 Q9Y244 11042152 MGI:1913787 RGD:1305831 POMP 613386 281391 +HGNC:9202 POMT1 protein O-mannosyltransferase 1 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 LGMD2K dolichyl-phosphate-mannose-protein mannosyltransferase Dolichyl D-mannosyl phosphate dependent mannosyltransferases 430 1999-06-25 2016-02-09 2016-10-12 10585 ENSG00000130714 OTTHUMG00000020826 uc004cax.3 AF095136 NM_007171 "CCDS6943|CCDS43894|CCDS43895|CCDS48045" Q9Y6A1 10366449 MGI:2138994 RGD:620078 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/POMT1|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=POMT1|LRG_842|http://www.lrg-sequence.org/LRG/LRG_842" POMT1 607423 117939 2.4.1.109 +HGNC:19743 POMT2 protein O-mannosyltransferase 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 LGMD2N Dolichyl-phosphate-mannose--protein mannosyltransferase Dolichyl D-mannosyl phosphate dependent mannosyltransferases 430 2003-01-17 2016-02-09 2016-10-12 29954 ENSG00000009830 OTTHUMG00000171556 uc001xti.3 AF105020 NM_013382 CCDS9857 Q9UKY4 "11162531|12460945" MGI:2444430 RGD:1586427 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/POMT2|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=POMT2|LRG_844|http://www.lrg-sequence.org/LRG/LRG_844" POMT2 607439 117942 2.4.1.109 +HGNC:9203 POMZP3 POM121 and ZP3 fusion protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "POM-ZP3|POM121" "POM-ZP3 fusion protein|POM121/ZP3 fusion protein" "POM (POM121 rat homolog) and ZP3 fusion|POM (POM121 homolog, rat) and ZP3 fusion" 2000-03-20 2010-06-24 2016-10-05 22932 ENSG00000146707 OTTHUMG00000023514 uc003uft.4 U10099 NM_012230 "CCDS5590|CCDS43606" Q6PJE2 7789967 POMZP3 600587 +HGNC:9204 PON1 paraoxonase 1 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 ESA "esterase A|arylesterase 1" PON Paraoxonases 463 2001-06-22 2014-11-19 5444 ENSG00000005421 OTTHUMG00000153894 uc003uns.4 AF539592 NM_000446 CCDS5638 P27169 "8661009|15450851" MGI:103295 RGD:620062 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ PON1 168820 239891 3.1.1.2 +HGNC:9205 PON2 paraoxonase 2 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "paraoxonase nirs|arylesterase 2" Paraoxonases 463 1995-05-25 2014-11-19 5445 ENSG00000105854 OTTHUMG00000153948 uc003unv.4 "M63012|AF001601" NM_000305 "CCDS5640|CCDS47644" Q15165 "8661009|9714608" MGI:106687 RGD:1309954 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ PON2 602447 239894 3.1.1.2 +HGNC:9206 PON3 paraoxonase 3 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 arylesterase 3 Paraoxonases 463 1995-05-25 2014-11-19 5446 ENSG00000105852 OTTHUMG00000153917 uc064fmn.1 "L48516|AF320003" NM_000940 CCDS5639 Q15166 8661009 MGI:106686 RGD:1302965 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ PON3 602720 239896 3.1.1.2 +HGNC:30129 POP1 POP1 homolog, ribonuclease P/MRP subunit protein-coding gene gene with protein product Approved 8q22.2 08q22.2 processing of precursors 1 processing of precursor 1, ribonuclease P/MRP subunit (S. cerevisiae) 2004-03-17 2015-07-09 2015-07-09 10940 ENSG00000104356 OTTHUMG00000164635 uc003yij.5 D31765 NM_015029 CCDS6277 Q99575 "10199568|8918471" MGI:1914974 RGD:1308609 POP1 602486 265545 +HGNC:30081 POP4 POP4 homolog, ribonuclease P/MRP subunit protein-coding gene gene with protein product Approved 19q12 19q12 RPP29 processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) 2004-03-17 2015-07-09 2015-07-09 10775 ENSG00000105171 OTTHUMG00000182020 uc002nsf.3 BC006098 NM_006627 CCDS12416 O95707 "10352175|10024167" MGI:1913411 RGD:1305955 POP4 606114 +HGNC:17689 POP5 POP5 homolog, ribonuclease P/MRP subunit protein-coding gene gene with protein product Approved 12q24.31 12q24.31 processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) 2004-03-17 2015-07-09 2015-07-09 51367 ENSG00000167272 OTTHUMG00000169023 uc001tys.3 AJ306296 NM_015918 "CCDS9202|CCDS9203" Q969H6 11413139 MGI:2151221 RGD:1311819 POP5 609992 +HGNC:19949 POP7 POP7 homolog, ribonuclease P/MRP subunit protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "RPP20|RPP2" ribonuclease P protein subunit p20 "processing of precursor 7, ribonuclease P subunit (S. cerevisiae)|processing of precursor 7, ribonuclease P/MRP subunit (S. cerevisiae)" 2004-03-17 2015-07-09 2016-10-05 10248 ENSG00000172336 OTTHUMG00000044311 uc003uwh.5 U94316 NM_005837 CCDS5704 O75817 9630247 MGI:1921347 RGD:1306413 POP7 606113 +HGNC:17648 POPDC2 popeye domain containing 2 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 POP2 2003-05-08 2004-01-15 64091 ENSG00000121577 OTTHUMG00000159438 uc062mvg.1 AF204173 NM_022135 "CCDS2992|CCDS77797" Q9HBU9 10882522 MGI:1930150 RGD:735226 POPDC2 605823 +HGNC:17649 POPDC3 popeye domain containing 3 protein-coding gene gene with protein product Approved 6q21 06q21 "POP3|MGC22671|bA355M14.1" 2003-05-08 2014-11-19 64208 ENSG00000132429 OTTHUMG00000015293 uc003prb.4 BC022323 NM_022361 CCDS5052 Q9HBV1 10882522 MGI:1930153 RGD:1590760 POPDC3 605824 +HGNC:9208 POR cytochrome p450 oxidoreductase protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "CYPOR|FLJ26468" P450 (cytochrome) oxidoreductase 1989-06-30 2016-03-15 2016-10-05 5447 ENSG00000127948 OTTHUMG00000130413 uc003udy.4 AF258341 NM_000941 CCDS5579 P16435 2516426 MGI:97744 RGD:68335 POR 124015 117944 1.6.2.4 +HGNC:17652 PORCN porcupine homolog (Drosophila) protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "MG61|PORC|PPN|por" DHOF dermal hypoplasia, focal 2004-05-12 2014-11-19 64840 ENSG00000102312 OTTHUMG00000024116 uc064yxx.1 AF317058 NM_022825 "CCDS14296|CCDS14297|CCDS14298|CCDS14299" Q9H237 "10866835|12034504|17546030" MGI:1890212 RGD:1564947 PORCN 300651 159255 +HGNC:16953 POSTN periostin protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "OSF-2|PN|periostin" osteoblast specific factor 2 periostin, osteoblast specific factor Gla domain containing 1250 2004-02-10 2016-04-05 2016-04-05 10631 ENSG00000133110 OTTHUMG00000016751 uc001uwo.5 D13665 NM_006475 "CCDS9364|CCDS45034|CCDS53864|CCDS66530|CCDS66531|CCDS81764" Q15063 "8363580|12235007" MGI:1926321 RGD:1305285 POSTN 608777 +HGNC:17284 POT1 protection of telomeres 1 protein-coding gene gene with protein product Approved 7q31.33 07q31.33 "hPot1|DKFZp586D211" protection of telomeres 1 homolog (S. pombe) Shelterin complex 1334 2004-08-20 2013-01-21 2014-11-19 25913 ENSG00000128513 OTTHUMG00000157194 uc003vlm.4 AK022580 XM_006715917 CCDS5793 Q9NUX5 "11349150|12391173" MGI:2141503 RGD:1562696 POT1 606478 353330 +HGNC:49459 POT1-AS1 POT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q31.33 07q31.33 2013-12-05 2013-12-05 401398 ENSG00000224897 OTTHUMG00000157170 BX648695 NR_125719 +HGNC:33893 POTEA POTE ankyrin domain family member A other unknown Approved 8p11.1 08p11.1 "POTE8|POTE-8|CT104.3" cancer/testis antigen family 104, member 3 A26A1 "ANKRD26-like family A, member 1|POTE ankyrin domain family, member A" "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2007-11-21 2008-11-26 2015-11-18 2015-11-18 340441 ENSG00000188877 OTTHUMG00000164111 AY462869 NM_001002920 Q6S8J7 POTEA 608915 +HGNC:33734 POTEB POTE ankyrin domain family member B protein-coding gene gene with protein product Approved 15q11.2 15q11.2 "POTE15|POTE-15|CT104.5" cancer/testis antigen family 104, member 5 A26B1 "ANKRD26-like family B, member 1|POTE ankyrin domain family, member B" "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2007-11-21 2008-11-26 2015-11-18 2015-11-18 100996331 ENSG00000233917 OTTHUMG00000171734 uc032bvc.2 AY465170 NM_207355 CCDS59250 Q6S5H4 POTEB 608912 +HGNC:48327 POTEB2 POTE ankyrin domain family member B2 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 POTE ankyrin domain family, member B2 "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2013-05-24 2015-11-18 2015-11-18 100287399 ENSG00000230031 OTTHUMG00000185829 XM_006720354 CCDS59248 H3BUK9 +HGNC:51240 POTEB3 POTE ankyrin domain family member B3 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 POTE ankyrin domain family, member B3 2014-10-08 2015-11-18 2015-11-18 102724631 ENSG00000278522 OTTHUMG00000189222 XM_011543795 CCDS73690 A0JP26 +HGNC:33894 POTEC POTE ankyrin domain family member C protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "POTE18|POTE-18|DKFZp686J0529|CT104.6" cancer/testis antigen family 104, member 6 A26B2 "ANKRD26-like family B, member 2|POTE ankyrin domain family, member C" "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2007-11-27 2008-11-26 2015-11-18 2015-11-18 388468 ENSG00000183206 OTTHUMG00000162963 uc010dln.4 BX649118 XM_496269 CCDS45835 B2RU33 POTEC +HGNC:23822 POTED POTE ankyrin domain family member D protein-coding gene gene with protein product Approved 21q11.2 21q11.2 "POTE|POTE-21|POTE21|CT104.1" cancer/testis antigen family 104, member 1 "ANKRD21|A26B3" "ankyrin repeat domain 21|ANKRD26-like family B, member 3|POTE ankyrin domain family, member D" "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2003-12-15 2008-11-26 2015-11-18 2015-11-18 317754 ENSG00000166351 OTTHUMG00000074197 uc002yjb.1 AY172978 NM_174981 CCDS13562 Q86YR6 "12475935|15276201|16364570" POTED 607549 +HGNC:33895 POTEE POTE ankyrin domain family member E protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "POTE2|POTE-2|A26C1|POTE2gamma|CT104.2" cancer/testis antigen family 104, member 2 A26C1A "ANKRD26-like family C, member 1A|POTE ankyrin domain family, member E" "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2007-11-21 2008-11-26 2015-11-18 2015-11-18 445582 ENSG00000188219 OTTHUMG00000186974 uc002tsn.3 AY462868 NM_001083538 CCDS46414 Q6S8J3 608914 +HGNC:33905 POTEF POTE ankyrin domain family member F protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "POTEACTIN|POTE2alpha" A26C1B "ANKRD26-like family C, member 1B|POTE ankyrin domain family, member F" "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2007-11-27 2008-11-26 2015-11-18 2015-11-18 728378 ENSG00000196604 OTTHUMG00000153628 uc010fmh.3 EF523384 NM_001099771 CCDS46409 A5A3E0 17101985 RGD:1584390 POTEF +HGNC:33896 POTEG POTE ankyrin domain family member G protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "POTE14|POTE-14|POTE14alpha|CT104.4" cancer/testis antigen family 104, member 4 A26C2 "ANKRD26-like family C, member 2|POTE ankyrin domain family, member G" "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2007-11-21 2008-11-26 2015-11-18 2015-11-18 404785 ENSG00000187537 OTTHUMG00000170518 uc032arv.2 NM_001005356 CCDS73610 Q6S5H5 RGD:1359470 POTEG 608916 +HGNC:133 POTEH POTE ankyrin domain family member H protein-coding gene gene with protein product Approved 22q11.1 22q11.1 "POTE22|CT104.7" cancer/testis antigen family 104, member 7 "ACTBL1|A26C3" "actin, beta-like 1|ANKRD26-like family C, member 3|POTE ankyrin domain family, member H" "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 1999-10-29 2008-11-26 2015-11-18 2015-11-18 23784 ENSG00000198062 OTTHUMG00000140314 uc010gqp.3 AY462874 NM_001136213 CCDS74808 Q6S545 "10591208|15276201|21439273" POTEH 608913 +HGNC:40058 POTEH-AS1 POTEH antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q11.1 22q11.1 POTEH antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100852406 ENSG00000236666 OTTHUMG00000140316 uc002zlk.5 AY338953 NR_046571 +HGNC:37093 POTEI POTE ankyrin domain family member I protein-coding gene gene with protein product Approved 2q21.1 02q21.1 POTE2beta POTE ankyrin domain family, member I "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2009-06-04 2015-11-18 2015-11-18 653269 ENSG00000196834 OTTHUMG00000153925 uc031rpa.2 XM_928585 CCDS59431 P0CG38 16364570 POTEI +HGNC:37094 POTEJ POTE ankyrin domain family member J protein-coding gene gene with protein product Approved 2q21.1 02q21.1 POTE2beta POTE ankyrin domain family, member J "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2009-06-04 2015-11-18 2015-11-18 653781 ENSG00000222038 OTTHUMG00000154050 uc021vor.3 XM_929706 CCDS59432 P0CG39 16364570 POTEJ +HGNC:30182 POTEKP POTE ankyrin domain family member K, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 "FKSG30|POTE2delta" "ACTBL3|POTEK" "actin, beta-like 3|POTE ankyrin domain family, member K|POTE ankyrin domain family, member K, pseudogene" POTE ankyrin domain containing 685 2005-04-08 2009-12-14 2015-11-18 2016-10-05 440915 ENSG00000204434 OTTHUMG00000150373 AY014272 NR_033885 Q9BYX7 16364570 611266 +HGNC:37096 POTEM POTE ankyrin domain family member M protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "POTE14beta|P704P|ACT" prostate-specific P704P POTE ankyrin domain family, member M "Ankyrin repeat domain containing|POTE ankyrin domain containing" "403|685" 2009-06-04 2015-11-18 2015-11-18 641455 ENSG00000222036 OTTHUMG00000170340 uc001vuz.3 NM_001145442 CCDS73609 A6NI47 16364570 POTEM +HGNC:9210 POU1F1 POU class 1 homeobox 1 protein-coding gene gene with protein product Approved 3p11.2 03p11.2 "GHF-1|POU1F1a" growth hormone factor 1 PIT1 POU domain class 1, transcription factor 1 POU class homeoboxes and pseudogenes 523 1993-01-12 2007-07-13 2015-08-25 5449 ENSG00000064835 OTTHUMG00000158992 uc003dqq.2 D10216 NM_000306 "CCDS2919|CCDS46873" P28069 1956794 MGI:97588 RGD:3367 POU1F1 173110 8494 117948 +HGNC:9211 POU2AF1 POU class 2 associating factor 1 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 OBF1 POU domain class 2, associating factor 1 1995-11-08 2007-07-13 2014-11-19 5450 ENSG00000110777 OTTHUMG00000166659 uc001plg.5 NM_006235 CCDS31675 Q16633 8617501 MGI:105086 RGD:1594728 POU2AF1 601206 317410 +HGNC:9212 POU2F1 POU class 2 homeobox 1 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 OCT1 OTF1 POU domain class 2, transcription factor 1 POU class homeoboxes and pseudogenes 523 1989-03-09 2007-07-13 2016-04-25 5451 ENSG00000143190 OTTHUMG00000034436 uc001gee.3 BC001664 NM_002697 "CCDS1259|CCDS55655|CCDS55656" P14859 1887216 MGI:101898 RGD:621689 POU2F1 164175 8547 +HGNC:9213 POU2F2 POU class 2 homeobox 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 OCT2 OTF2 POU domain class 2, transcription factor 2 POU class homeoboxes and pseudogenes 523 1989-03-08 2007-07-13 2015-08-25 5452 ENSG00000028277 OTTHUMG00000165991 uc002osn.4 XM_017026884 "CCDS33035|CCDS56094|CCDS56095|CCDS58665" P09086 MGI:101897 RGD:621690 POU2F2 164176 8495 +HGNC:19864 POU2F3 POU class 2 homeobox 3 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "OCT11|PLA-1|Skn-1a|Epoc-1" POU domain class 2, transcription factor 3 POU class homeoboxes and pseudogenes 523 2002-11-28 2007-07-13 2014-11-19 25833 ENSG00000137709 OTTHUMG00000166140 uc001pxc.4 AF133895 XM_011542739 "CCDS8431|CCDS58190" Q9UKI9 10473598 MGI:102565 RGD:621691 POU2F3 607394 8496 +HGNC:9214 POU3F1 POU class 3 homeobox 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "OCT6|SCIP" OTF6 POU domain class 3, transcription factor 1 POU class homeoboxes and pseudogenes 523 1994-06-03 2007-07-13 2015-08-25 5453 ENSG00000185668 OTTHUMG00000000485 uc001ccp.2 L26494 NM_002699 CCDS30679 Q03052 8451175 MGI:101896 RGD:619767 POU3F1 602479 8497 +HGNC:9215 POU3F2 POU class 3 homeobox 2 protein-coding gene gene with protein product Approved 6q16.1 06q16.1 "POUF3|BRN2|OCT7" OTF7 POU domain class 3, transcription factor 2 POU class homeoboxes and pseudogenes 523 1994-06-03 2007-07-13 2016-10-05 5454 ENSG00000184486 OTTHUMG00000015258 uc003ppe.4 Z11933 NM_005604 CCDS5040 P20265 8441633 MGI:101895 RGD:61946 POU3F2 600494 8498 +HGNC:9216 POU3F3 POU class 3 homeobox 3 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 "BRN1|OTF8" POU domain class 3, transcription factor 3 POU class homeoboxes and pseudogenes 523 1995-03-17 2007-07-13 2014-11-18 5455 ENSG00000198914 OTTHUMG00000153067 uc010ywg.3 NM_006236 CCDS33265 P20264 MGI:102564 RGD:619768 POU3F3 602480 8499 +HGNC:9217 POU3F4 POU class 3 homeobox 4 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "BRN4|OTF9|DFNX2" brain-4 DFN3 POU domain class 3, transcription factor 4 POU class homeoboxes and pseudogenes 523 1994-09-30 2007-07-13 2015-11-02 5456 ENSG00000196767 OTTHUMG00000021919 uc004eeg.3 X82324 NM_000307 CCDS14450 P49335 "7911044|7581392" MGI:101894 RGD:61947 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=POU3F4" POU3F4 300039 8500 117952 +HGNC:9218 POU4F1 POU class 4 homeobox 1 protein-coding gene gene with protein product Approved 13q31.1 13q31.1 RDC-1 BRN3A POU domain class 4, transcription factor 1 POU class homeoboxes and pseudogenes 523 1993-10-21 2007-07-13 2014-11-18 5457 ENSG00000152192 OTTHUMG00000017119 uc001vkv.4 X64624 NM_006237 CCDS31996 Q01851 1357630 MGI:102525 RGD:620074 POU4F1 601632 8501 +HGNC:9219 POU4F2 POU class 4 homeobox 2 protein-coding gene gene with protein product Approved 4q31.22 04q31.22 Brn-3b BRN3B "POU domain, class 4, transcription factor 2|POU domain class 4, transcription factor 2" POU class homeoboxes and pseudogenes 523 1993-10-21 2007-07-13 2015-09-07 5458 ENSG00000151615 OTTHUMG00000162045 uc003ikv.4 U06233 NM_004575 CCDS34074 Q12837 8332509 MGI:102524 RGD:620075 POU4F2 113725 8548 +HGNC:9220 POU4F3 POU class 4 homeobox 3 protein-coding gene gene with protein product Approved 5q32 05q32 BRN3C DFNA15 POU domain class 4, transcription factor 3 POU class homeoboxes and pseudogenes 523 1998-01-07 2007-07-13 2015-07-01 5459 ENSG00000091010 OTTHUMG00000129684 uc003loa.2 U10060 NM_002700 CCDS4281 Q15319 9506947 MGI:102523 RGD:1310459 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org/ POU4F3 602460 8502 117957 +HGNC:9221 POU5F1 POU class 5 homeobox 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "OCT3|Oct4|MGC22487" OTF3 POU domain class 5, transcription factor 1 POU class homeoboxes and pseudogenes 523 1992-11-05 2007-07-13 2016-04-25 5460 ENSG00000204531 OTTHUMG00000031206 uc003nsv.4 Z11898 NM_002701 "CCDS34391|CCDS47398|CCDS75420" Q01860 1408763 MGI:101893 RGD:1359491 POU5F1 164177 8634 +HGNC:9223 POU5F1B POU class 5 homeobox 1B protein-coding gene gene with protein product Approved 8q24.21 08q24.21 OTF3C "OTF3P1|POU5F1P1" "POU domain class 5, transcription factor 1 pseudogene 1|POU class 5 homeobox 1 pseudogene 1" POU class homeoboxes and pseudogenes 523 1992-11-05 2009-04-15 2009-04-15 2015-09-07 5462 ENSG00000212993 OTTHUMG00000157807 uc003ysf.4 AF268615 NM_001159542 CCDS55274 Q06416 1408763 POU5F1B 615739 8397 +HGNC:33309 POU5F1P2 POU class 5 homeobox 1 pseudogene 2 pseudogene pseudogene Approved 8q22.3 08q22.3 POU domain class 5, transcription factor 1 pseudogene 2 POU class homeoboxes and pseudogenes 523 2007-02-07 2007-07-13 2015-02-09 100129512 ENSG00000253382 OTTHUMG00000164734 NG_006103 8561 PGOHUM00000303338 +HGNC:9222 POU5F1P3 POU class 5 homeobox 1 pseudogene 3 pseudogene pseudogene Approved 12p13.31 12p13.31 POU5FLC12 "OTF3L|POU5F1L" "POU domain, class 5, transcription factor 1-like|POU domain class 5, transcription factor 1 pseudogene 3" POU class homeoboxes and pseudogenes 523 1993-01-15 2007-02-07 2007-07-13 2015-02-09 642559 ENSG00000235602 OTTHUMG00000168634 AF268617 NR_036440 8500351 8562 PGOHUM00000291204 +HGNC:33310 POU5F1P4 POU class 5 homeobox 1 pseudogene 4 pseudogene pseudogene Approved 1q22 01q22 "POU5FLC1|Oct4-pg4" POU domain class 5, transcription factor 1 pseudogene 4 POU class homeoboxes and pseudogenes 523 2007-02-07 2007-07-13 2015-02-09 645682 ENSG00000237872 OTTHUMG00000014016 NR_034180 8563 PGOHUM00000296585 +HGNC:33311 POU5F1P5 POU class 5 homeobox 1 pseudogene 5 pseudogene pseudogene Approved 10q21.3 10q21.3 Oct4-pg5 POU domain class 5, transcription factor 1 pseudogene 5 POU class homeoboxes and pseudogenes 523 2007-02-07 2007-07-13 2014-11-18 100009667 ENSG00000236375 OTTHUMG00000018342 NR_131184 8564 PGOHUM00000238512 +HGNC:33312 POU5F1P6 POU class 5 homeobox 1 pseudogene 6 pseudogene pseudogene Approved 3q21.3 03q21.3 POU domain class 5, transcription factor 1 pseudogene 6 POU class homeoboxes and pseudogenes 523 2007-02-07 2007-07-13 2015-02-09 100009668 ENSG00000242551 OTTHUMG00000159808 NG_006105 8565 PGOHUM00000299160 +HGNC:33313 POU5F1P7 POU class 5 homeobox 1 pseudogene 7 pseudogene pseudogene Approved 3q11.2 03q11.2 POU domain class 5, transcription factor 1 pseudogene 7 POU class homeoboxes and pseudogenes 523 2007-02-07 2007-07-13 2015-02-09 100009669 ENSG00000248365 OTTHUMG00000160082 NG_006106 8566 PGOHUM00000299506 +HGNC:33314 POU5F1P8 entry withdrawn withdrawn withdrawn Entry Withdrawn POU class homeoboxes and pseudogenes 523 2015-02-09 8567 +HGNC:26367 POU5F2 POU domain class 5, transcription factor 2 protein-coding gene gene with protein product Approved 5q15 05q15 "SPRM-1|FLJ25680" POU class homeoboxes and pseudogenes 523 2007-07-13 2015-09-07 134187 ENSG00000248483 OTTHUMG00000162644 uc003kkl.2 NM_153216 CCDS59489 Q8N7G0 7908264 MGI:1922757 RGD:1589456 POU5F2 8633 +HGNC:9224 POU6F1 POU class 6 homeobox 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "BRN5|MPOU|TCFB1" POU domain, class 6, transcription factor 1 POU class homeoboxes and pseudogenes 523 1994-09-30 2007-07-13 2015-08-25 5463 ENSG00000184271 OTTHUMG00000169622 uc001rya.5 AL832881 NM_002702 "CCDS31803|CCDS81691" Q14863 7908264 MGI:102935 RGD:620615 POU6F1 8398 +HGNC:21694 POU6F2 POU class 6 homeobox 2 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 RPF-1 Retina-derived POU-domain factor-1 POU domain, class 6, transcription factor 2 POU class homeoboxes and pseudogenes 523 2004-01-29 2007-07-13 2014-11-18 11281 ENSG00000106536 OTTHUMG00000150803 uc064czc.1 U91934 NM_007252 "CCDS34620|CCDS55103" P78424 8601806 MGI:2443631 RGD:1584652 POU6F2 609062 8503 117961 +HGNC:40979 POU6F2-AS1 POU6F2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 POU6F2 antisense RNA 1 (non-protein coding) 2011-09-08 2012-08-15 2014-11-19 100861520 ENSG00000224122 OTTHUMG00000155277 uc031sxa.2 "AI807878|BX113391" NR_046711 +HGNC:21887 POU6F2-AS2 POU6F2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 FLJ12971 POU6F2 antisense RNA 2 (non-protein coding) 2011-09-08 2012-08-15 2012-10-12 100689074 ENSG00000233854 OTTHUMG00000155276 uc064czb.1 AK023033 XR_001745172 +HGNC:28884 PP1P pyrophosphatase (inorganic) 1 pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 2005-01-26 2005-01-26 151842 NG_002639 +HGNC:28406 PP2D1 protein phosphatase 2C like domain containing 1 protein-coding gene gene with protein product Approved 3p24.3 03p24.3 FLJ25449 C3orf48 "chromosome 3 open reading frame 48|protein phosphatase 2C-like domain containing 1" 2006-01-16 2011-06-24 2016-01-27 2016-01-27 151649 ENSG00000183977 OTTHUMG00000155393 uc021wtw.2 AK058178 NM_144714 CCDS58817 A8MPX8 12477932 MGI:3612067 RGD:1564811 +HGNC:9226 PPA1 pyrophosphatase (inorganic) 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "SID6-8061|Ppase|IOPPP|PP1" "cytosolic inorganic pyrophosphatase|inorganic pyrophosphatase 1|pyrophosphate phospho-hydrolase|inorganic diphosphatase 1" PP pyrophosphatase (inorganic) 2001-06-22 2005-10-07 2015-12-04 2016-02-29 5464 ENSG00000180817 OTTHUMG00000018399 uc001jqv.2 AF154065 NM_021129 CCDS7299 Q15181 "10542310|975879" MGI:97831 RGD:1589773 PPA1 179030 3.6.1.1 +HGNC:28883 PPA2 pyrophosphatase (inorganic) 2 protein-coding gene gene with protein product Approved 4q24 04q24 FLJ20459 2005-10-07 2016-10-05 27068 ENSG00000138777 OTTHUMG00000128781 uc003hxl.4 NM_176869 "CCDS3667|CCDS3668|CCDS3669|CCDS34043" Q9H2U2 11042152 MGI:1922026 RGD:1307965 PPA2 609988 3.6.1.1 +HGNC:9227 PPAN peter pan homolog (Drosophila) protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "SSF1|SSF2|SSF|BXDC3" peter pan (Drosophila) homolog 2000-08-01 2001-11-28 2015-09-07 56342 ENSG00000130810 OTTHUMG00000156826 uc002mmz.3 BC033202 NM_020230 CCDS12225 Q9NQ55 10873382 MGI:2178445 RGD:1306325 PPAN 607793 +HGNC:33526 PPAN-P2RY11 PPAN-P2RY11 readthrough other readthrough Approved 19p13.2 19p13.2 2007-07-31 2016-02-05 692312 ENSG00000243207 OTTHUMG00000150165 uc002mna.4 AJ300588 NM_001040664 "CCDS42498|CCDS56082" PPAN-P2RY11 +HGNC:9232 PPARA peroxisome proliferator activated receptor alpha protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "hPPAR|NR1C1" PPAR "peroxisome proliferative activated receptor, alpha|peroxisome proliferator-activated receptor alpha" Nuclear hormone receptors 71 1993-11-01 2016-01-27 2016-10-05 5465 ENSG00000186951 OTTHUMG00000150443 uc003bgx.1 L02932 NM_001001928 CCDS33669 Q07869 "7684926|10591208" MGI:104740 RGD:3369 PPARA 170998 objectId:593 +HGNC:9233 PPARAL entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-28 +HGNC:9235 PPARD peroxisome proliferator activated receptor delta protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "NUC1|NUCII|FAAR|NR1C2" "peroxisome proliferative activated receptor, delta|peroxisome proliferator-activated receptor delta" Nuclear hormone receptors 71 1996-03-12 2016-01-27 2016-10-05 5467 ENSG00000112033 OTTHUMG00000014567 uc003okm.3 L07592 NM_006238 "CCDS4803|CCDS4804|CCDS54994|CCDS54995" Q03181 1333051 MGI:101884 RGD:3370 PPARD 600409 objectId:594 +HGNC:9236 PPARG peroxisome proliferator activated receptor gamma protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "PPARG1|PPARG2|NR1C3|PPARgamma" "peroxisome proliferative activated receptor, gamma|peroxisome proliferator-activated receptor gamma" Nuclear hormone receptors 71 1996-03-12 2016-01-27 2016-10-05 5468 ENSG00000132170 OTTHUMG00000129764 uc003bwx.4 X90563 NM_005037 "CCDS2609|CCDS2610" P37231 "7862171|9750197" MGI:97747 RGD:3371 PPARG 601487 117964 objectId:595 +HGNC:9237 PPARGC1A PPARG coactivator 1 alpha protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "PGC1|PGC1A|PGC-1alpha" PPARgamma coactivator 1alpha PPARGC1 "peroxisome proliferative activated receptor, gamma, coactivator 1|peroxisome proliferative activated receptor, gamma, coactivator 1, alpha|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha" RNA binding motif containing 725 1999-08-02 2004-02-04 2016-01-27 2016-10-05 10891 ENSG00000109819 OTTHUMG00000097747 uc003gqs.3 AF106698 NM_013261 CCDS3429 Q9UBK2 10585775 MGI:1342774 RGD:620925 PPARGC1A 604517 363670 +HGNC:30022 PPARGC1B PPARG coactivator 1 beta protein-coding gene gene with protein product Approved 5q32 05q32 "PERC|PGC1B" PPARgamma coactivator 1 beta "peroxisome proliferative activated receptor, gamma, coactivator 1, beta|peroxisome proliferator-activated receptor gamma, coactivator 1 beta" RNA binding motif containing 725 2004-02-03 2016-01-27 2016-10-05 133522 ENSG00000155846 OTTHUMG00000130055 uc003lrc.4 AF468496 NM_133263 "CCDS4298|CCDS54933|CCDS54934" Q86YN6 "11793024|11854298" MGI:2444934 RGD:727948 PPARGC1B 608886 +HGNC:9238 PPAT phosphoribosyl pyrophosphate amidotransferase protein-coding gene gene with protein product Approved 4q12 04q12 "GPAT|PRAT" 2001-06-22 2015-08-25 5471 ENSG00000128059 OTTHUMG00000128842 uc003hbr.4 NM_002703 CCDS3505 Q06203 MGI:2387203 RGD:620237 PPAT 172450 C44.001 objectId:2761 2.4.2.14 +HGNC:9239 PPATP1 phosphoribosyl pyrophosphate amidotransferase pseudogene 1 pseudogene pseudogene Approved 3p12.1 03p12.1 1995-11-02 2014-11-19 100289640 ENSG00000241293 OTTHUMG00000158985 NG_022210 8106516 PGOHUM00000237672 +HGNC:48738 PPATP2 phosphoribosyl pyrophosphate amidotransferase pseudogene 2 pseudogene pseudogene Approved Xq21.1 Xq21.1 2013-06-07 2013-06-07 100421601 ENSG00000271433 OTTHUMG00000185044 NG_026724 PGOHUM00000241410 +HGNC:9240 PPBP pro-platelet basic protein protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "SCYB7|TGB|NAP-2-L1|LA-PF4|MDGF|LDGF|Beta-TG|CTAP3|CXCL7|PBP|b-TG1|TGB1|CTAPIII|NAP-2" "platelet basic protein|beta-thromboglobulin|connective tissue-activating peptide III|neutrophil-activating peptide-2|chemokine (C-X-C motif) ligand 7" THBGB1 Endogenous ligands 542 1991-05-21 2015-11-13 2016-10-05 5473 ENSG00000163736 OTTHUMG00000130008 uc003hhj.4 M54995 NM_002704 CCDS3563 P02775 1826003 MGI:1888712 RGD:70548 PPBP 121010 +HGNC:9241 PPBPP1 pro-platelet basic protein pseudogene 1 pseudogene pseudogene Approved 4q13.3 04q13.3 TGB2 PPBPL1 pro-platelet basic protein-like 1 1991-10-21 2012-04-20 2012-04-20 2014-11-19 728045 ENSG00000250550 OTTHUMG00000160814 NG_016721 1316786 188035 +HGNC:16981 PPBPP2 pro-platelet basic protein pseudogene 2 pseudogene pseudogene Approved 4q13.3 04q13.3 SPBPBP PPBPL2 pro-platelet basic protein-like 2 2004-07-02 2012-04-20 2012-04-20 2014-11-19 10895 ENSG00000248848 OTTHUMG00000160862 L10403 NR_026769 7887923 611591 PGOHUM00000245591 +HGNC:28107 PPCDC phosphopantothenoylcysteine decarboxylase protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "MDS018|FLJ14585" 2005-07-25 2014-11-19 60490 ENSG00000138621 OTTHUMG00000142824 uc002azo.4 AK027491 NM_021823 "CCDS10275|CCDS73761|CCDS73759|CCDS73760|CCDS76781" Q96CD2 "12975309|11923312" MGI:1914062 RGD:1306267 PPCDC 609854 4.1.1.36 +HGNC:25686 PPCS phosphopantothenoylcysteine synthetase protein-coding gene gene with protein product Approved 1p34.2 01p34.2 FLJ11838 2005-07-25 2014-11-19 79717 ENSG00000127125 OTTHUMG00000007332 uc001chl.5 AK021900 NM_024664 "CCDS41311|CCDS41312" Q9HAB8 11923312 MGI:1915237 RGD:1311399 PPCS 609853 6.3.2.5 +HGNC:16142 PPDPF pancreatic progenitor cell differentiation and proliferation factor protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "dJ697K14.9|exdpf" exocrine differentiation and proliferation factor C20orf149 "chromosome 20 open reading frame 149|pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish)" 2001-07-17 2009-06-04 2013-07-23 2015-08-25 79144 ENSG00000125534 OTTHUMG00000032978 uc002yff.4 AL121829 NM_024299 CCDS13523 Q9H3Y8 MGI:1913746 RGD:1310660 PPDPF +HGNC:9243 PPEF1 protein phosphatase with EF-hand domain 1 protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 PPP7CA protein phosphatase 7, catalytic subunit, alpha isozyme PPEF protein phosphatase, EF-hand calcium binding domain 1 "Protein phosphatase catalytic subunits|EF-hand domain containing" "693|863" 1997-01-09 2016-02-26 2016-10-05 5475 ENSG00000086717 OTTHUMG00000021219 uc004cyq.4 BC036026 NM_006240 "CCDS14188|CCDS43920" O14829 "9215685|9326663" MGI:1097157 RGD:1562772 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PPEF1 PPEF1 300109 +HGNC:40463 PPEF1-AS1 PPEF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.13 Xp22.13 PPEF1 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100874004 ENSG00000237221 OTTHUMG00000021217 uc064yfm.1 NR_046642 +HGNC:9244 PPEF2 protein phosphatase with EF-hand domain 2 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 PPP7CB protein phosphatase 7, catalytic subunit, beta isozyme protein phosphatase, EF-hand calcium binding domain 2 "Protein phosphatase catalytic subunits|EF-hand domain containing" "693|863" 1997-11-05 2016-02-26 2016-02-26 5470 ENSG00000156194 OTTHUMG00000160915 uc003hix.4 AF023456 NM_006239 CCDS34013 O14830 "9326663|12051765" MGI:1342304 RGD:1307093 PPEF2 602256 +HGNC:9245 PPFIA1 PTPRF interacting protein alpha 1 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 "LIP.1|LIPRIN" Liprin-alpha1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 Sterile alpha motif domain containing 760 1998-10-23 2016-02-10 2016-02-10 8500 ENSG00000131626 OTTHUMG00000167266 uc001opo.4 U22816 NM_003626 "CCDS31627|CCDS31628" Q13136 "7796809|9624153" MGI:1924750 RGD:1309009 PPFIA1 611054 +HGNC:9246 PPFIA2 PTPRF interacting protein alpha 2 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 Liprin-alpha2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 Sterile alpha motif domain containing 760 1998-10-23 2016-02-10 2016-02-10 8499 ENSG00000139220 OTTHUMG00000170181 uc058rji.1 AF034799 XM_017020079 "CCDS55850|CCDS55851|CCDS55852|CCDS55853|CCDS55854|CCDS55855|CCDS55856|CCDS55857|CCDS59236|CCDS73503" O75334 9624153 MGI:2443834 RGD:1305021 PPFIA2 603143 +HGNC:9247 PPFIA3 PTPRF interacting protein alpha 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "KIAA0654|LPNA3|MGC126567|MGC126569" "protein tyrosine phosphatase, receptor type, f polypeptide, alpha 3|liprin-alpha 3|liprin" protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 Sterile alpha motif domain containing 760 1998-10-23 2016-02-10 2016-02-10 8541 ENSG00000177380 OTTHUMG00000183213 uc002pmr.5 AF034800 NM_003660 CCDS12758 O75145 "9624153|9734811" MGI:1924037 RGD:620054 PPFIA3 603144 +HGNC:9248 PPFIA4 PTPRF interacting protein alpha 4 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 Liprin-alpha4 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 Sterile alpha motif domain containing 760 1998-10-23 2016-02-10 2016-02-10 8497 ENSG00000143847 OTTHUMG00000042123 uc057ono.1 AF034801 NM_015053 O75335 9624153 MGI:1915757 RGD:620055 PPFIA4 603145 +HGNC:9249 PPFIBP1 PPFIA binding protein 1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "L2|hSGT2|hSgt2p|SGT2" liprin beta 1 PTPRF interacting protein, binding protein 1 (liprin beta 1) Sterile alpha motif domain containing 760 1998-10-23 2016-02-10 2016-02-10 8496 ENSG00000110841 OTTHUMG00000169207 uc001rib.3 AF034802 NM_003622 "CCDS8713|CCDS55812|CCDS55813|CCDS55814" Q86W92 "9624153|11836260" MGI:1914783 RGD:1310010 PPFIBP1 603141 +HGNC:9250 PPFIBP2 PPFIA binding protein 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 Cclp1 liprin beta 2 PTPRF interacting protein, binding protein 2 (liprin beta 2) Sterile alpha motif domain containing 760 1998-10-23 2016-02-10 2016-02-10 8495 ENSG00000166387 OTTHUMG00000165617 uc001mfj.6 AF034803 NM_003621 "CCDS31419|CCDS58116|CCDS58117" Q8ND30 9624153 MGI:894649 RGD:1565383 PPFIBP2 603142 +HGNC:15733 PPH2 primary pulmonary hypertension 2 phenotype phenotype only Approved 2q31-q32 02q31-q32 2001-05-22 2007-03-12 89873 "12821254|15295086" +HGNC:19369 PPHLN1 periphilin 1 protein-coding gene gene with protein product Approved 12q12 12q12 2002-11-04 2006-10-24 51535 ENSG00000134283 OTTHUMG00000169440 uc001rng.2 AY157850 NM_201515 "CCDS8741|CCDS31777|CCDS41773|CCDS44860|CCDS44861|CCDS55817" Q8NEY8 MGI:1917029 RGD:1306207 PPHLN1 608150 +HGNC:9253 PPIA peptidylprolyl isomerase A protein-coding gene gene with protein product Approved 7p13 07p13 CYPA cyclophilin A Cyclophilin peptidylprolyl isomerases 909 1991-12-06 2016-01-14 2016-01-14 5478 ENSG00000196262 OTTHUMG00000023687 uc003tlw.4 X52851 NM_021130 "CCDS5494|CCDS75592" P62937 "1989998|2197089" MGI:97749 RGD:3372 PPIA 123840 objectId:2751 5.2.1.8 +HGNC:24369 PPIAL4A peptidylprolyl isomerase A like 4A protein-coding gene gene with protein product Approved 1p11.2 01p11.2 COAS2 "PPIAL4|PPIAL4B" "peptidylprolyl isomerase A (cyclophilin A)-like 4|peptidylprolyl isomerase A (cyclophilin A)-like 4B" 2005-04-21 2008-09-16 2016-01-14 2016-01-14 653505 ENSG00000263353 OTTHUMG00000185015 uc031upa.2 AB084917 NM_001143883 CCDS76197 Q9Y536 11948409 PPIAL4A +HGNC:33995 PPIAL4C peptidylprolyl isomerase A like 4C protein-coding gene gene with protein product Approved 1q21.2 01q21.2 2008-09-16 2016-01-14 2016-10-05 653598 ENSG00000263464 OTTHUMG00000188675 uc031uxg.1 NM_001135789 CCDS72898 A0A0B4J2A2 PPIAL4C +HGNC:33998 PPIAL4D peptidylprolyl isomerase A like 4D protein-coding gene gene with protein product Approved 1q21.1 01q21.1 2008-09-16 2016-01-14 2016-10-05 645142 ENSG00000256374 OTTHUMG00000078265 uc031usm.2 NM_001164261 CCDS59199 F5H284 +HGNC:33997 PPIAL4E peptidylprolyl isomerase A like 4E protein-coding gene gene with protein product Approved 1q21.1 01q21.1 2008-09-16 2016-01-14 2016-01-14 730262 ENSG00000271567 OTTHUMG00000189244 uc010paz.2 NM_001144032 CCDS76201 A0A075B759 608608 +HGNC:33999 PPIAL4F peptidylprolyl isomerase A like 4F protein-coding gene gene with protein product Approved 1q21.1 01q21.1 2008-09-16 2016-01-14 2016-01-14 728945 ENSG00000279782 OTTHUMG00000189245 uc032nbt.2 NM_001164262 CCDS76202 P0DN26 RGD:6493676 +HGNC:33996 PPIAL4G peptidylprolyl isomerase A like 4G protein-coding gene gene with protein product Approved 1q21.2 01q21.2 2008-09-16 2016-01-14 2016-10-05 644591 ENSG00000236334 OTTHUMG00000013629 uc001ejt.4 NM_001123068 CCDS41375 P0DN37 RGD:1559682 PPIAL4G +HGNC:9254 PPIAP1 peptidylprolyl isomerase A pseudogene 1 pseudogene pseudogene Approved 21q21.1 21q21.1 PPIAP peptidylprolyl isomerase A (cyclophilin A), pseudogene 2000-05-23 2010-03-23 2016-01-14 2016-01-14 100288185 ENSG00000215351 OTTHUMG00000078060 NG_000914 PGOHUM00000239047 +HGNC:16542 PPIAP2 peptidylprolyl isomerase A pseudogene 2 pseudogene pseudogene Approved 20p11.21 20p11.21 bA384D7.2 2001-09-17 2016-01-14 2016-01-14 170537 ENSG00000227379 OTTHUMG00000032123 AL353812 NG_001048 +HGNC:16545 PPIAP3 peptidylprolyl isomerase A pseudogene 3 pseudogene pseudogene Approved 20q11.23 20q11.23 bA425M5.2 2001-09-17 2016-01-14 2016-01-14 170539 ENSG00000235044 OTTHUMG00000032425 AL109614 NG_001014 PGOHUM00000247653 +HGNC:19935 PPIAP4 peptidylprolyl isomerase A pseudogene 4 pseudogene pseudogene Approved 14q21.1 14q21.1 2003-01-13 2016-01-14 2016-01-14 122552 NG_002483 PGOHUM00000250144 +HGNC:20027 PPIAP5 peptidylprolyl isomerase A pseudogene 5 pseudogene pseudogene Approved 14q23.1 14q23.1 2003-01-13 2016-01-14 2016-01-14 122842 NG_002484 +HGNC:20028 PPIAP6 peptidylprolyl isomerase A pseudogene 6 pseudogene pseudogene Approved 14q24.1 14q24.1 2003-01-13 2016-01-14 2016-01-14 319128 ENSG00000258477 OTTHUMG00000171757 NG_002506 PGOHUM00000247840 +HGNC:9270 PPIAP7 peptidylprolyl isomerase A pseudogene 7 pseudogene pseudogene Approved 1p21.2 01p21.2 PPIP7 peptidylprolyl isomerase (cyclophilin) pseudogene 7 1992-07-09 2005-10-20 2016-01-14 2016-01-14 5489 ENSG00000173810 OTTHUMG00000010833 X52858 NG_005171 2197089 PGOHUM00000244123 +HGNC:9271 PPIAP8 peptidylprolyl isomerase A pseudogene 8 pseudogene pseudogene Approved 12q23.1 12q23.1 PPIP8 peptidylprolyl isomerase (cyclophilin) pseudogene 8 1992-07-09 2005-10-20 2016-01-14 2016-01-14 341457 NG_006121 PPIAP8 +HGNC:9272 PPIAP9 peptidylprolyl isomerase A pseudogene 9 pseudogene pseudogene Approved 6p21.33 06p21.33 Em:AC006046.3 PPIP9 peptidylprolyl isomerase (cyclophilin) pseudogene 9 1998-02-03 2005-11-04 2016-01-14 2016-10-05 5491 ENSG00000219797 OTTHUMG00000031290 NG_001025 8824804 PGOHUM00000243143 +HGNC:9264 PPIAP10 peptidylprolyl isomerase A pseudogene 10 pseudogene pseudogene Approved 20q13.2 20q13.2 CRP cyclophillin related pseudogene "PPIAL2|PPIP10" "peptidylprolyl isomerase A (cyclophilin A)-like 2|peptidylprolyl isomerase (cyclophilin) pseudogene 10" 1998-10-12 2005-10-20 2016-01-14 2016-01-14 140913 ENSG00000224530 OTTHUMG00000032762 AL354993 NG_001008 9671742 PGOHUM00000247677 +HGNC:9263 PPIAP11 peptidylprolyl isomerase A pseudogene 11 pseudogene pseudogene Approved 5q14.1 05q14.1 PPIP1 peptidylprolyl isomerase (cyclophilin) pseudogene 1 1992-07-09 2005-11-04 2016-01-14 2016-01-14 5483 ENSG00000251495 OTTHUMG00000162554 X52856 NG_001177 2197089 +HGNC:9265 PPIAP12 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-28 +HGNC:9266 PPIAP13 peptidylprolyl isomerase A pseudogene 13 pseudogene pseudogene Approved 10q22.2 10q22.2 PPIP3 peptidylprolyl isomerase (cyclophilin) pseudogene 3 1992-07-09 2005-11-04 2016-01-14 2016-01-14 5485 ENSG00000237882 OTTHUMG00000018513 X52853 NG_005167 2197089 PGOHUM00000238539 +HGNC:9267 PPIAP14 peptidylprolyl isomerase A pseudogene 14 pseudogene pseudogene Approved 18p11.31 18p11.31 PPIP4 peptidylprolyl isomerase (cyclophilin) pseudogene 4 1992-07-09 2005-11-04 2016-01-14 2016-01-14 5486 ENSG00000264775 OTTHUMG00000178431 X52854 NG_005168 2197089 PGOHUM00000234846 +HGNC:9268 PPIAP15 peptidylprolyl isomerase A pseudogene 15 pseudogene pseudogene Approved 3q13.13 03q13.13 PPIP5 peptidylprolyl isomerase (cyclophilin) pseudogene 5 1992-07-09 2005-11-04 2016-01-14 2016-01-14 5487 ENSG00000244196 OTTHUMG00000159216 X52855 NG_005169 2197089 PGOHUM00000237714 +HGNC:9269 PPIAP16 peptidylprolyl isomerase A pseudogene 16 pseudogene pseudogene Approved 3p14.3 03p14.3 PPIP6 peptidylprolyl isomerase (cyclophilin) pseudogene 6 1992-07-09 2005-11-04 2016-01-14 2016-01-14 5488 ENSG00000213509 OTTHUMG00000158640 X52857 NG_005170 2197089 PGOHUM00000238044 +HGNC:16334 PPIAP17 peptidylprolyl isomerase A pseudogene 17 pseudogene pseudogene Approved 20p12.1 20p12.1 bA494B22.1 PPIP11 peptidylprolyl isomerase (cyclophilin) pseudogene 11 2001-09-17 2005-11-04 2016-01-14 2016-10-05 170540 ENSG00000225622 OTTHUMG00000031926 "AL161941|NG_001049" NG_001049 PGOHUM00000247450 +HGNC:32454 PPIAP18 peptidylprolyl isomerase A pseudogene 18 pseudogene pseudogene Approved 3p21.32 03p21.32 2006-01-13 2016-01-14 2016-01-14 729673 NG_006115 PGOHUM00000238016 +HGNC:31663 PPIAP19 peptidylprolyl isomerase A pseudogene 19 pseudogene pseudogene Approved 10q25.3 10q25.3 bA108K1.2 2007-07-31 2016-01-14 2016-01-14 390006 ENSG00000228169 OTTHUMG00000019087 NG_009701 PGOHUM00000238630 +HGNC:38037 PPIAP20 peptidylprolyl isomerase A pseudogene 20 pseudogene pseudogene Approved 19p13.2 19p13.2 2010-03-23 2016-01-14 2016-01-14 100500737 ENSG00000235686 OTTHUMG00000156419 NG_027657 PGOHUM00000234518 +HGNC:16246 PPIAP21 peptidylprolyl isomerase A pseudogene 21 pseudogene pseudogene Approved 20q13.11 20q13.11 dJ269M15.1 PPIAL peptidylprolyl isomerase A (cyclophilin A)-like 2001-07-17 2010-10-25 2016-01-14 2016-10-05 170536 ENSG00000226038 OTTHUMG00000032496 AL021395 NG_001566 PGOHUM00000247661 +HGNC:17236 PPIAP22 peptidylprolyl isomerase A pseudogene 22 pseudogene pseudogene Approved 21q21.1 21q21.1 PPIA3L PPIAL3 peptidylprolyl isomerase A (cyclophilin A)-like 3 2003-10-01 2010-10-25 2016-01-14 2016-01-14 653214 ENSG00000198618 OTTHUMG00000074545 NG_005752 +HGNC:39268 PPIAP23 peptidylprolyl isomerase A pseudogene 23 pseudogene pseudogene Approved 13q31.3 13q31.3 2010-11-24 2016-01-14 2016-01-14 390419 ENSG00000214178 OTTHUMG00000017189 NG_011394 PGOHUM00000248461 +HGNC:39269 PPIAP24 peptidylprolyl isomerase A pseudogene 24 pseudogene pseudogene Approved 13q33.3 13q33.3 2010-11-24 2016-01-14 2016-01-14 122335 ENSG00000174408 OTTHUMG00000017325 NG_005155 PGOHUM00000248491 +HGNC:39270 PPIAP25 peptidylprolyl isomerase A pseudogene 25 pseudogene pseudogene Approved 13q14.13 13q14.13 2010-11-24 2016-01-14 2016-01-14 647085 ENSG00000229303 OTTHUMG00000016854 NG_011429 PGOHUM00000248583 +HGNC:39271 PPIAP26 peptidylprolyl isomerase A pseudogene 26 pseudogene pseudogene Approved 13q14.3 13q14.3 2010-11-24 2016-01-14 2016-01-14 121981 ENSG00000150276 OTTHUMG00000016978 NG_023035 PGOHUM00000248600 +HGNC:42646 PPIAP27 peptidylprolyl isomerase A pseudogene 27 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-08-10 2016-01-14 2016-01-14 100874405 ENSG00000234363 OTTHUMG00000016524 NG_032526 PGOHUM00000248319 +HGNC:39902 PPIAP28 peptidylprolyl isomerase A pseudogene 28 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-08-10 2016-01-14 2016-01-14 390378 ENSG00000226633 OTTHUMG00000016508 NG_011400 PGOHUM00000258696 +HGNC:43021 PPIAP29 peptidylprolyl isomerase A pseudogene 29 pseudogene pseudogene Approved 6p22.3 06p22.3 2011-10-04 2016-01-14 2016-01-14 134997 ENSG00000214975 OTTHUMG00000014377 NG_007346 PGOHUM00000243508 +HGNC:44878 PPIAP30 peptidylprolyl isomerase A pseudogene 30 pseudogene pseudogene Approved 10p13 10p13 2012-12-10 2016-01-14 2016-01-14 100192204 ENSG00000206448 OTTHUMG00000017730 NR_036506 PGOHUM00000238365 +HGNC:44962 PPIAP31 peptidylprolyl isomerase A pseudogene 31 pseudogene pseudogene Approved 10p11.22 10p11.22 2012-12-20 2016-01-14 2016-01-14 439953 ENSG00000217094 OTTHUMG00000017919 NG_030116 PGOHUM00000238396 +HGNC:49531 PPIAP32 peptidylprolyl isomerase A pseudogene 32 pseudogene pseudogene Approved 10q26.3 10q26.3 2014-01-08 2016-01-14 2016-01-14 101927399 ENSG00000233319 OTTHUMG00000019270 PGOHUM00000238652 +HGNC:49752 PPIAP33 peptidylprolyl isomerase A pseudogene 33 pseudogene pseudogene Approved 9p24.1 09p24.1 2014-02-13 2016-01-14 2016-01-14 392285 ENSG00000178654 OTTHUMG00000019538 PGOHUM00000236382 +HGNC:9255 PPIB peptidylprolyl isomerase B protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "CYPB|OI9" cyclophilin B Cyclophilin peptidylprolyl isomerases 909 1991-11-25 2016-01-14 2016-10-12 5479 ENSG00000166794 OTTHUMG00000133018 uc002and.4 NM_000942 CCDS10191 P23284 "2000394|20089953" MGI:97750 RGD:620312 "Osteogenesis Imperfecta Variant Database|https://oi.gene.le.ac.uk/home.php?select_db=PPIB|LRG_10|http://www.lrg-sequence.org/LRG/LRG_10" PPIB 123841 217124 5.2.1.8 +HGNC:9256 PPIC peptidylprolyl isomerase C protein-coding gene gene with protein product Approved 5q23.2 05q23.2 CYPC cyclophilin C Cyclophilin peptidylprolyl isomerases 909 1993-06-18 2016-01-14 2016-01-14 5480 ENSG00000168938 OTTHUMG00000128921 uc003kth.4 S71018 NM_000943 CCDS4133 P45877 "1383094|8031755" MGI:97751 RGD:1303221 PPIC 123842 5.2.1.8 +HGNC:9257 PPID peptidylprolyl isomerase D protein-coding gene gene with protein product Approved 4q32.1 04q32.1 CYP-40 cyclophilin 40 peptidylprolyl isomerase D (cyclophilin D) "Tetratricopeptide repeat domain containing|Cyclophilin peptidylprolyl isomerases" "769|909" 1995-08-23 2008-10-24 2016-10-05 5481 ENSG00000171497 OTTHUMG00000161927 uc003iqc.4 NM_005038 CCDS3801 Q08752 8509368 MGI:1914988 RGD:1303174 PPID 601753 +HGNC:9258 PPIE peptidylprolyl isomerase E protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "CyP-33|MGC3736|MGC111222" "peptidyl-prolyl cis-trans isomerase E|cyclophilin 33|cyclophilin E|PPIase E|rotamase E|peptidylprolyl isomerase E, isoform 1" "RNA binding motif containing|Cyclophilin peptidylprolyl isomerases" "725|909" 1999-07-07 2016-01-14 2016-10-12 10450 ENSG00000084072 OTTHUMG00000009248 uc001cds.3 AF042385 NM_006112 "CCDS442|CCDS443|CCDS53299" Q9UNP9 9747881 MGI:1917118 RGD:1311411 LRG_1053|http://www.lrg-sequence.org/LRG/LRG_1053 PPIE 602435 +HGNC:33195 PPIEL peptidylprolyl isomerase E like pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 PPIEP1 peptidylprolyl isomerase E (cyclophilin E) pseudogene 1 "peptidylprolyl isomerase E-like|peptidylprolyl isomerase E-like (pseudogene)" 2010-04-08 2016-01-14 2016-10-05 728448 ENSG00000243970 OTTHUMG00000008393 CN265253 NR_003929.2 17471289 PGOHUM00000243975 +HGNC:9259 PPIF peptidylprolyl isomerase F protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "hCyP3|Cyp-D" cyclophilin D peptidylprolyl isomerase F (cyclophilin F) Cyclophilin peptidylprolyl isomerases 909 1999-06-02 2008-10-24 2015-09-07 10105 ENSG00000108179 OTTHUMG00000018562 uc001kai.4 M80254 NM_005729 CCDS7358 P30405 1744118 MGI:2145814 RGD:628670 PPIF 604486 5.2.1.8 +HGNC:14650 PPIG peptidylprolyl isomerase G protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "CARS-Cyp|SRCyp|SCAF10" "SR-related CTD-associated factor 10|cyclophilin G" Cyclophilin peptidylprolyl isomerases 909 2001-03-26 2016-01-14 2016-01-14 9360 ENSG00000138398 OTTHUMG00000132206 uc002uez.4 X99717 XM_017005302 CCDS2235 Q13427 "8973360|9153302" MGI:2445173 RGD:620315 PPIG 606093 6.1.1.16 +HGNC:34231 PPIGP1 peptidylprolyl isomerase G pseudogene 1 pseudogene pseudogene Approved 5q33.2 05q33.2 2010-09-13 2016-01-14 2016-01-14 100131033 NG_028955 PGOHUM00000235819 +HGNC:14651 PPIH peptidylprolyl isomerase H protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "USA-CYP|CYP-20|SnuCyp-20|CYPH|MGC5016" "USA-CyP SnuCyp-20|cyclophilin H|U-snRNP-associated cyclophilin SunCyp-20|small nuclear ribonucleoprotein particle-specific cyclophilin H|rotamase H|peptidyl-prolyl cis-trans isomerase H|PPIase h" peptidyl prolyl isomerase H (cyclophilin H) Cyclophilin peptidylprolyl isomerases 909 2001-03-16 2016-01-14 2016-10-05 10465 ENSG00000171960 OTTHUMG00000007520 uc001chq.4 AF016371 NM_006347 "CCDS469|CCDS81308" O43447 "9404889|9570313" MGI:106499 RGD:1564921 PPIH 606095 +HGNC:31355 PPIHP1 peptidylprolyl isomerase H pseudogene 1 pseudogene pseudogene Approved 11q23.1 11q23.1 peptidyl prolyl isomerase H (cyclophilin H) pseudogene 1 2004-03-11 2016-01-14 2016-01-14 246731 ENSG00000230911 OTTHUMG00000133754 AY425814 NG_001586 +HGNC:31356 PPIHP2 peptidylprolyl isomerase H pseudogene 2 pseudogene pseudogene Approved Xq23 Xq23 peptidyl prolyl isomerase H (cyclophilin H) pseudogene 2 2004-03-11 2016-01-14 2016-01-14 404199 AY425815 NG_004860 +HGNC:9260 PPIL1 peptidylprolyl isomerase like 1 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 CYPL1 cyclophilin like 1 peptidylprolyl isomerase (cyclophilin)-like 1 Cyclophilin peptidylprolyl isomerases 909 1995-09-05 2015-11-23 2016-10-05 51645 ENSG00000137168 OTTHUMG00000014612 uc003omu.3 AF090992 NM_016059 CCDS4826 Q9Y3C6 "10072585|8978786" MGI:1916066 RGD:1309119 PPIL1 601301 +HGNC:20865 PPIL1P1 peptidylprolyl isomerase like 1 pseudogene 1 pseudogene pseudogene Approved 2p23.3 02p23.3 peptidylprolyl isomerase (cyclophilin)-like 1 pseudogene 1 2003-04-16 2015-11-23 2015-11-23 150947 ENSG00000237951 OTTHUMG00000151937 NG_001555 PGOHUM00000240604 +HGNC:9261 PPIL2 peptidylprolyl isomerase like 2 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "UBOX7|CYC4|Cyp-60" "U-box domain containing 7|peptidyl-prolyl cis-trans isomerase-like 2" peptidylprolyl isomerase (cyclophilin)-like 2 "U-box domain containing|Cyclophilin peptidylprolyl isomerases" "365|909" 1999-10-29 2015-11-23 2016-10-05 23759 ENSG00000100023 OTTHUMG00000191763 uc002zvi.5 XM_011530041 "CCDS13793|CCDS46670" Q13356 10591208 MGI:2447857 RGD:1309484 PPIL2 607588 5.2.1.8 +HGNC:9262 PPIL3 peptidylprolyl isomerase like 3 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 CyPJ Cyclophilin J peptidylprolyl isomerase (cyclophilin)-like 3 Cyclophilin peptidylprolyl isomerases 909 2000-05-31 2015-11-23 2015-11-23 53938 ENSG00000240344 OTTHUMG00000132782 uc002uwh.4 AF251049 XM_017004352 "CCDS2332|CCDS2333" Q9H2H8 11435694 MGI:1917475 RGD:631415 PPIL3 615811 +HGNC:15702 PPIL4 peptidylprolyl isomerase like 4 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 peptidylprolyl isomerase (cyclophilin)-like 4 "RNA binding motif containing|Cyclophilin peptidylprolyl isomerases" "725|909" 2001-06-01 2015-11-23 2015-11-23 85313 ENSG00000131013 OTTHUMG00000015788 uc003qmo.3 NM_139126 CCDS34550 Q8WUA2 MGI:1914668 RGD:1311051 PPIL4 607609 +HGNC:21557 PPIL6 peptidylprolyl isomerase like 6 protein-coding gene gene with protein product Approved 6q21 06q21 "bA425D10.6|MGC41939|dJ919F19.1|RSPH12" radial spoke 12 homolog (Chlamydomonas) peptidylprolyl isomerase (cyclophilin)-like 6 Cyclophilin peptidylprolyl isomerases 909 2003-06-24 2015-11-23 2016-04-25 285755 ENSG00000185250 OTTHUMG00000036593 uc003ptg.4 XM_011535765 "CCDS47466|CCDS5074|CCDS69169" Q8IXY8 MGI:1920325 RGD:1592581 PPIL6 +HGNC:29023 PPIP5K1 diphosphoinositol pentakisphosphate kinase 1 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "KIAA0377|IPS1|VIP1" HISPPD2A histidine acid phosphatase domain containing 2A 2005-11-04 2010-01-26 2010-01-26 2014-11-19 9677 ENSG00000168781 OTTHUMG00000059758 uc001zry.5 AF502586 NM_014659 "CCDS32215|CCDS45252|CCDS53937" Q6PFW1 "17412958|17690096|18981179" MGI:2443281 PPIP5K1 610979 2.7.4.24 +HGNC:32373 PPIP5K1P1 diphosphoinositol pentakisphosphate kinase 1 pseudogene 1 pseudogene pseudogene Approved 15q15.3 15q15.3 "HISPPD2BP|KIAA0377P" HISPPD2B histidine acid phosphatase domain containing 2B (pseudogene) 2005-11-04 2010-01-26 2010-01-26 2010-01-26 554224 NG_029358 12825070 +HGNC:29035 PPIP5K2 diphosphoinositol pentakisphosphate kinase 2 protein-coding gene gene with protein product Approved 5q21.1 05q21.1 "KIAA0433|VIP2|CFAP160" HISPPD1 histidine acid phosphatase domain containing 1 2005-11-04 2010-01-26 2010-01-26 2015-08-04 23262 ENSG00000145725 OTTHUMG00000181461 uc063fui.1 AB007893 NM_015216 "CCDS34207|CCDS64212|CCDS75283" O43314 "9455477|17690096|18981179" MGI:2142810 RGD:1590765 PPIP5K2 611648 2.7.4.24 +HGNC:9273 PPL periplakin protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Plakins 939 1997-08-22 2014-11-19 5493 ENSG00000118898 OTTHUMG00000129528 uc002cyd.1 AF013717 NM_002705 CCDS10526 O60437 "9570964|9521878" MGI:1194898 RGD:1305511 PPL 602871 +HGNC:9275 PPM1A protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "MGC9201|PP2Calpha|PP2CA" "phosphatase 2C alpha|protein phosphatase 2C, alpha isoform" "protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform|protein phosphatase, Mg2+/Mn2+ dependent, 1A" Protein phosphatases, Mg2+/Mn2+ dependent 701 1993-02-05 2015-11-20 2015-11-20 5494 ENSG00000100614 OTTHUMG00000140333 uc001xey.5 S87759 NM_021003 "CCDS9744|CCDS9745|CCDS45120" P35813 1311954 MGI:99878 RGD:3373 PPM1A 606108 3.1.3.16 +HGNC:30175 PPM1AP1 protein phosphatase, Mg2+/Mn2+ dependent 1A pseudogene 1 pseudogene pseudogene Approved 8p22 08p22 "protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform pseudogene 1|protein phosphatase, Mg2+/Mn2+ dependent 1A, pseudogene 1" 2009-10-12 2015-11-20 2015-11-20 137012 ENSG00000250483 OTTHUMG00000161571 NG_002692 PGOHUM00000249256 +HGNC:9276 PPM1B protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding gene gene with protein product Approved 2p21 02p21 "PPC2BETAX|PP2CB|PP2CBETA" protein phosphatase 2C, beta isoform "protein phosphatase 1B (formerly 2C), magnesium-dependent, beta isoform|protein phosphatase, Mg2+/Mn2+ dependent, 1B" Protein phosphatases, Mg2+/Mn2+ dependent 701 1993-02-05 2015-11-20 2016-10-05 5495 ENSG00000138032 OTTHUMG00000128757 uc002rtt.4 AJ005801 NM_002706 "CCDS1816|CCDS1817|CCDS1818|CCDS46271" O75688 9684878 MGI:101841 RGD:3374 PPM1B 603770 244720 3.1.3.16 +HGNC:9277 PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "Wip1|PP2C-DELTA" "wild-type p53-induced phosphatase 1|protein phosphatase 2C, delta isoform" "protein phosphatase 1D magnesium-dependent, delta isoform|protein phosphatase, Mg2+/Mn2+ dependent, 1D" Protein phosphatases, Mg2+/Mn2+ dependent 701 1998-10-14 2015-11-20 2016-10-12 8493 ENSG00000170836 OTTHUMG00000180052 uc002iyt.3 U78305 NM_003620 CCDS11625 O15297 9177166 MGI:1858214 RGD:1305460 LRG_770|http://www.lrg-sequence.org/LRG/LRG_770 PPM1D 605100 437674 +HGNC:19322 PPM1E protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding gene gene with protein product Approved 17q24.2 17q24.2 "POPX1|KIAA1072|PP2CH|CaMKP-N" "partner of PIX 1|nuclear calmodulin-dependent protein kinase phosphatase" "protein phosphatase 1E (PP2C domain containing)|protein phosphatase, Mg2+/Mn2+ dependent, 1E" Protein phosphatases, Mg2+/Mn2+ dependent 701 2002-11-28 2015-11-20 2015-11-20 22843 ENSG00000175175 OTTHUMG00000179248 uc002iwx.5 AB028995 NM_014906 CCDS11613 Q8WY54 "11864573|10470851" MGI:2444096 RGD:735028 PPM1E +HGNC:19388 PPM1F protein phosphatase, Mg2+/Mn2+ dependent 1F protein-coding gene gene with protein product Approved 22q11.22 22q11.22 "FEM-2|KIAA0015|POPX2|CaMKPase|CAMKP" "partner of PIX 2|Ca(2+)/calmodulin-dependent protein kinase phosphatase" "protein phosphatase 1F (PP2C domain containing)|protein phosphatase, Mg2+/Mn2+ dependent, 1F" Protein phosphatases, Mg2+/Mn2+ dependent 701 2002-11-28 2015-11-20 2015-11-20 9647 ENSG00000100034 OTTHUMG00000150835 uc002zvp.3 D13640 NM_014634 CCDS13796 P49593 "11864573|11559703" MGI:1918464 RGD:631363 PPM1F 3.1.3.16 +HGNC:9278 PPM1G protein phosphatase, Mg2+/Mn2+ dependent 1G protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "PP2CG|PP2Cgamma" "PP2C, gamma|protein phosphatase 2C, gamma isoform" "protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform|protein phosphatase, Mg2+/Mn2+ dependent, 1G" Protein phosphatases, Mg2+/Mn2+ dependent 701 1997-11-11 2015-11-20 2015-11-20 5496 ENSG00000115241 OTTHUMG00000097788 uc002rkl.5 Y13936 NM_002707 CCDS1752 O15355 9276438 MGI:106065 RGD:628676 PPM1G 605119 3.1.3.16 +HGNC:18583 PPM1H protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding gene gene with protein product Approved 12q14.1-q14.2 12q14.1-q14.2 "KIAA1157|FLJ13253|NERPP-2C" neurite extension-related protein phosphatase related to PP2C ARHCL1 "ras homolog gene family, member C like 1|protein phosphatase 1H (PP2C domain containing)|protein phosphatase, Mg2+/Mn2+ dependent, 1H" Protein phosphatases, Mg2+/Mn2+ dependent 701 2002-04-29 2004-03-26 2015-11-20 2016-10-11 57460 ENSG00000111110 OTTHUMG00000169990 uc001srk.5 AB032983 NM_020700 CCDS44934 Q9ULR3 MGI:2442087 RGD:1309528 PPM1H 616016 3.1.3.16 +HGNC:20785 PPM1J protein phosphatase, Mg2+/Mn2+ dependent 1J protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "FLJ35951|MGC19531|DKFZp434P1514|PP2Czeta|PPP2CZ" protein phosphatase 2C zeta "protein phosphatase 1J (PP2C domain containing)|protein phosphatase, Mg2+/Mn2+ dependent, 1J" Protein phosphatases, Mg2+/Mn2+ dependent 701 2005-03-07 2015-11-20 2016-10-05 333926 ENSG00000155367 OTTHUMG00000012019 uc001ect.2 AK093270 NM_005167 CCDS855 Q5JR12 12633878 MGI:1919137 RGD:1359104 PPM1J 609957 3.1.3.16 +HGNC:25415 PPM1K protein phosphatase, Mg2+/Mn2+ dependent 1K protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "DKFZp761G058|PP2Ckappa|hPTMP|PP2Cm|BDP" "PP2C-type mitochondrial phosphoprotein phosphatase|protein phosphatase 2C kappa|branched-chain α-ketoacid dehydrogenase phosphatase" "protein phosphatase 1K (PP2C domain containing)|protein phosphatase, Mg2+/Mn2+ dependent, 1K" Protein phosphatases, Mg2+/Mn2+ dependent 701 2005-01-11 2015-11-20 2015-11-20 152926 ENSG00000163644 OTTHUMG00000130952 uc003hrm.6 BC037552 NM_152542 CCDS3629 Q8N3J5 22291014 MGI:2442111 RGD:1308501 PPM1K 611065 326069 3.1.3.16 +HGNC:16381 PPM1L protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding gene gene with protein product Approved 3q25.33-q26.1 03q25.33-q26.1 PP2CE "PP2Cepsilon|Protein phosphatase 2C epsilon isoform" "protein phosphatase 1 (formerly 2C)-like|protein phosphatase, Mg2+/Mn2+ dependent, 1L" Protein phosphatases, Mg2+/Mn2+ dependent 701 2003-10-15 2015-11-20 2016-10-11 151742 ENSG00000163590 OTTHUMG00000159048 uc003fdu.4 AK055115 NM_139245 "CCDS33886|CCDS82868|CCDS82869" Q5SGD2 12556533 MGI:2139740 RGD:1305220 PPM1L 611931 3.1.3.16 +HGNC:26506 PPM1M protein phosphatase, Mg2+/Mn2+ dependent 1M protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "PP2Ceta|FLJ32332" protein phosphatase 2C eta "protein phosphatase 1M (PP2C domain containing)|protein phosphatase, Mg2+/Mn2+ dependent, 1M" Protein phosphatases, Mg2+/Mn2+ dependent 701 2005-04-25 2015-11-20 2016-10-05 132160 ENSG00000164088 OTTHUMG00000153046 uc011bed.3 AK096681 NM_144641 CCDS46840 Q96MI6 12477932 MGI:1915155 RGD:1584266 PPM1M 608979 +HGNC:26845 PPM1N protein phosphatase, Mg2+/Mn2+ dependent 1N (putative) protein-coding gene gene with protein product Approved 19q13.32 19q13.32 FLJ40125 protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative) Protein phosphatases, Mg2+/Mn2+ dependent 701 2010-03-05 2015-11-20 2015-11-20 147699 ENSG00000213889 OTTHUMG00000140397 uc002pce.4 AK097444 NM_001080401 CCDS46115 Q8N819 MGI:2142330 RGD:1562091 PPM1N +HGNC:30178 PPME1 protein phosphatase methylesterase 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 PME-1 Protein phosphatase 2 modulatory subunits 1265 2005-11-18 2014-03-14 51400 ENSG00000214517 OTTHUMG00000168115 uc001ouw.5 NM_016147 "CCDS44678|CCDS60891" Q9Y570 10318862 MGI:1919840 RGD:1309683 PPME1 611117 S33.984 objectId:2875 3.1.1.89 +HGNC:9280 PPOX protoporphyrinogen oxidase protein-coding gene gene with protein product Approved 1q23.3 01q23.3 PPO VP variegate porphyria 1988-08-31 2016-10-12 5498 ENSG00000143224 OTTHUMG00000034342 uc001fyg.3 BC002357 NM_000309 CCDS1221 P50336 "8575762|10457135" MGI:104968 RGD:1310543 LRG_1078|http://www.lrg-sequence.org/LRG/LRG_1078 PPOX 600923 117969 1.3.3.4 +HGNC:9281 PPP1CA protein phosphatase 1 catalytic subunit alpha protein-coding gene gene with protein product Approved 11q13 11q13 "PP1A|PP-1A|PP1alpha" PPP1A "protein phosphatase 1, catalytic subunit, alpha isoform|protein phosphatase 1, catalytic subunit, alpha isozyme" Protein phosphatase catalytic subunits 693 1989-10-11 2016-02-10 2016-02-10 5499 ENSG00000172531 OTTHUMG00000167671 uc001okw.2 NM_002708 "CCDS8160|CCDS8161|CCDS31618" P62136 MGI:103016 RGD:3375 PPP1CA 176875 3.1.3.16 +HGNC:9282 PPP1CB protein phosphatase 1 catalytic subunit beta protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "PP1B|PP-1B|PP1beta" "protein phosphatase 1, catalytic subunit, beta isoform|protein phosphatase 1, catalytic subunit, beta isozyme" Protein phosphatase catalytic subunits 693 1993-01-22 2016-02-10 2016-10-05 5500 ENSG00000213639 OTTHUMG00000152011 uc002rmg.4 NM_002709 CCDS33169 P62140 8312365 MGI:104871 RGD:3376 PPP1CB 600590 3.1.3.16 +HGNC:9283 PPP1CC protein phosphatase 1 catalytic subunit gamma protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "PP1C|PP1gamma" "protein phosphatase 1, catalytic subunit, gamma isoform|protein phosphatase 1, catalytic subunit, gamma isozyme" Protein phosphatase catalytic subunits 693 1992-12-01 2016-02-10 2016-10-05 5501 ENSG00000186298 OTTHUMG00000169531 uc001tru.4 XM_011538504 "CCDS9150|CCDS58279" P36873 MGI:104872 RGD:3377 PPP1CC 176914 3.1.3.16 +HGNC:9286 PPP1R1A protein phosphatase 1 regulatory inhibitor subunit 1A protein-coding gene gene with protein product Approved 12q13.2 12q13.2 protein phosphatase 1, regulatory (inhibitor) subunit 1A Protein phosphatase 1 regulatory subunits 694 1993-01-22 2015-11-18 2015-11-18 5502 ENSG00000135447 OTTHUMG00000169934 uc001sgg.3 U48707 NM_006741 CCDS44912 Q13522 8611507 MGI:1889595 RGD:62018 PPP1R1A 613246 3.1.3.16 +HGNC:16316 PPP1R1AP1 protein phosphatase 1 regulatory inhibitor subunit 1A pseudogene 1 pseudogene pseudogene Approved 11q13.5 11q13.5 protein phosphatase 1, regulatory (inhibitor) subunit 1A pseudogene 1 2001-08-08 2015-11-18 2015-11-18 94304 ENSG00000255255 OTTHUMG00000165320 NG_030171 11948623 PGOHUM00000242373 +HGNC:16317 PPP1R1AP2 protein phosphatase 1 regulatory inhibitor subunit 1A pseudogene 2 pseudogene pseudogene Approved 16p11.1 16p11.1 protein phosphatase 1, regulatory (inhibitor) subunit 1A pseudogene 2 2001-08-08 2015-11-18 2015-11-18 100129627 ENSG00000261084 OTTHUMG00000176027 NG_022518 11948623 +HGNC:9287 PPP1R1B protein phosphatase 1 regulatory inhibitor subunit 1B protein-coding gene gene with protein product Approved 17q12 17q12 "DARPP-32|FLJ20940" dopamine and cAMP regulated phosphoprotein protein phosphatase 1, regulatory (inhibitor) subunit 1B Protein phosphatase 1 regulatory subunits 694 1993-01-22 2015-11-18 2015-11-18 84152 ENSG00000131771 OTTHUMG00000133210 uc002hrz.4 AI124650 NM_032192 "CCDS11339|CCDS11340" Q9UD71 8120638 MGI:94860 RGD:621859 PPP1R1B 604399 3.1.3.16 +HGNC:14940 PPP1R1C protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding gene gene with protein product Approved 2q31.3-q32.1 02q31.3-q32.1 Inhibitor-1-like protein phosphatase 1, regulatory (inhibitor) subunit 1C Protein phosphatase 1 regulatory subunits 694 2001-06-29 2015-11-18 2016-10-11 151242 ENSG00000150722 OTTHUMG00000154326 uc002uop.3 "AF494535|BC017943" NM_001080545 "CCDS46468|CCDS58740" Q8WVI7 11948623 MGI:1923185 RGD:1562095 PPP1R1C 613240 +HGNC:9288 PPP1R2 protein phosphatase 1 regulatory inhibitor subunit 2 protein-coding gene gene with protein product Approved 3q29 03q29 IPP2 protein phosphatase 1, regulatory (inhibitor) subunit 2 Protein phosphatase 1 regulatory subunits 694 1993-01-22 2015-11-18 2015-11-18 5504 ENSG00000184203 OTTHUMG00000155887 uc032sob.2 U68111 NM_006241 CCDS3309 P41236 "9126490|8119416" MGI:1914099 RGD:621099 PPP1R2 601792 3.1.3.16 +HGNC:9289 PPP1R2P1 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 1 pseudogene pseudogene Approved 6p21.32 06p21.32 IPP-2P PPP1R2P protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 1 1994-12-15 2001-08-31 2015-11-18 2015-11-18 100507444 ENSG00000234515 OTTHUMG00000031273 AF275684 NG_027882 Q96PQ5 "11696978|7949733" PGOHUM00000264325 +HGNC:9290 PPP1R2P2 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudogene pseudogene Approved 21q22.12 21q22.12 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 2 2000-05-23 2015-11-18 2016-10-05 54036 ENSG00000234008 OTTHUMG00000086466 NG_000913 10830953 PGOHUM00000239168 +HGNC:16318 PPP1R2P3 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 3 pseudogene pseudogene Approved 5q33.3 05q33.3 MGC87149 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 3 2001-08-29 2015-11-18 2015-11-18 153743 ENSG00000231989 OTTHUMG00000163467 BC066922 NR_038443 Q6NXS1 11948623 +HGNC:16319 PPP1R2P4 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 4 pseudogene pseudogene Approved 13q14.13 13q14.13 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 4 2001-08-08 2015-11-18 2015-11-18 728970 ENSG00000241353 OTTHUMG00000016876 NG_011458 11948623 +HGNC:16320 PPP1R2P5 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 5 pseudogene pseudogene Approved 2q12.3 02q12.3 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 5 2001-08-08 2015-11-18 2015-11-18 649489 ENSG00000229360 OTTHUMG00000153206 NG_021516 11948623 PGOHUM00000240239 +HGNC:16321 PPP1R2P6 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 6 pseudogene pseudogene Approved 7q34 07q34 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 6 2001-08-08 2015-11-18 2015-11-18 100130972 ENSG00000241661 OTTHUMG00000157342 NG_022575 11948623 PGOHUM00000233596 +HGNC:16322 PPP1R2P7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:16323 PPP1R2P8 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 8 pseudogene pseudogene Approved 5p14.3 05p14.3 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 8 2001-08-08 2015-11-18 2015-11-18 94310 NG_031921 11948623 +HGNC:16324 PPP1R2P9 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 9 pseudogene pseudogene Approved Xp11.3 Xp11.3 I-4 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 9 2001-08-08 2015-11-18 2015-11-18 80316 ENSG00000102055 OTTHUMG00000021382 AB044137 NR_002191 O14990 11948623 RGD:1562126 PPP1R2P9 PGOHUM00000241251 +HGNC:42008 PPP1R2P10 protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 10 pseudogene pseudogene Approved 13q21.31 13q21.31 protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 10 2011-05-31 2015-11-18 2015-11-18 100128626 ENSG00000213232 OTTHUMG00000017024 NG_029109 PGOHUM00000248417 +HGNC:9291 PPP1R3A protein phosphatase 1 regulatory subunit 3A protein-coding gene gene with protein product Approved 7q31.1 07q31.1 GM "glycogen-associated regulatory subunit of protein phosphatase-1|protein phosphatase 1 regulatory subunit GM" PPP1R3 "protein phosphatase 1, regulatory (inhibitor) subunit 3A (glycogen and sarcoplasmic reticulum binding subunit, skeletal muscle)|protein phosphatase 1, regulatory (inhibitor) subunit 3A|protein phosphatase 1, regulatory subunit 3A" Protein phosphatase 1 regulatory subunits 694 1993-01-22 2001-07-02 2015-11-18 2015-11-18 5506 ENSG00000154415 OTTHUMG00000156944 uc010ljy.2 AF024578 NM_002711 CCDS5759 Q16821 7926294 MGI:2153588 RGD:1561312 PPP1R3A 600917 3.1.3.16 +HGNC:14942 PPP1R3B protein phosphatase 1 regulatory subunit 3B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "GL|FLJ14005|PPP1R4" "PP1 subunit R4|hepatic glycogen-targeting subunit, G(L)" "protein phosphatase 1, regulatory (inhibitor) subunit 3B|protein phosphatase 1, regulatory subunit 3B" Protein phosphatase 1 regulatory subunits 694 2001-06-29 2015-11-18 2015-11-18 79660 ENSG00000173281 OTTHUMG00000129329 uc003wsn.5 AK024067 NM_024607 CCDS5973 Q86XI6 "11948623|17555403" MGI:2177268 RGD:621600 PPP1R3B 610541 +HGNC:9293 PPP1R3C protein phosphatase 1 regulatory subunit 3C protein-coding gene gene with protein product Approved 10q23.32 10q23.32 PTG "Phosphatase 1, regulatory inhibitor subunit 5|protein targeting to glycogen" PPP1R5 "protein phosphatase 1, regulatory (inhibitor) subunit 3C|protein phosphatase 1, regulatory subunit 3C" Protein phosphatase 1 regulatory subunits 694 1997-06-24 2001-08-01 2015-11-18 2016-10-05 5507 ENSG00000119938 OTTHUMG00000018745 uc001kho.4 Y18207 NM_005398 CCDS7416 Q9UQK1 8985175 MGI:1858229 RGD:1309132 PPP1R3C 602999 +HGNC:9294 PPP1R3D protein phosphatase 1 regulatory subunit 3D protein-coding gene gene with protein product Approved 20q13.33 20q13.33 PPP1R6 "protein phosphatase 1, regulatory (inhibitor) subunit 3D|protein phosphatase 1, regulatory subunit 3D" Protein phosphatase 1 regulatory subunits 694 1998-08-13 2001-08-01 2015-11-18 2016-10-05 5509 ENSG00000132825 OTTHUMG00000032876 uc002ybb.4 Y18206 NM_006242 CCDS13483 O95685 "9414128|9275233" MGI:1917664 RGD:1586306 PPP1R3D 603326 +HGNC:14943 PPP1R3E protein phosphatase 1 regulatory subunit 3E protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ00089 "protein phosphatase 1, regulatory (inhibitor) subunit 3E|protein phosphatase 1, regulatory subunit 3E" Protein phosphatase 1 regulatory subunits 694 2001-06-29 2015-11-18 2015-11-18 90673 ENSG00000235194 OTTHUMG00000172116 uc031qns.2 AK024489 NM_001276318 CCDS61403 Q9H7J1 "11948623|15752363" MGI:2145790 RGD:1583926 PPP1R3E +HGNC:14944 PPP1R3F protein phosphatase 1 regulatory subunit 3F protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 Hb2E "protein phosphatase 1, regulatory (inhibitor) subunit 3F|protein phosphatase 1, regulatory subunit 3F" Protein phosphatase 1 regulatory subunits 694 2001-06-29 2015-11-18 2015-11-18 89801 ENSG00000049769 OTTHUMG00000024139 uc004dnh.3 NM_033215 "CCDS35254|CCDS55415" Q6ZSY5 11948623 MGI:1859617 RGD:1566398 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PPP1R3F PPP1R3F +HGNC:14945 PPP1R3G protein phosphatase 1 regulatory subunit 3G protein-coding gene gene with protein product Approved 6p25.1 06p25.1 "protein phosphatase 1, regulatory (inhibitor) subunit 3G|protein phosphatase 1, regulatory subunit 3G" Protein phosphatase 1 regulatory subunits 694 2001-07-03 2015-11-18 2015-11-18 648791 ENSG00000219607 OTTHUMG00000014172 uc011dia.2 NM_001145115 CCDS47366 B7ZBB8 11948623 MGI:1923737 RGD:1308930 PPP1R3G +HGNC:9295 PPP1R7 protein phosphatase 1 regulatory subunit 7 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 sds22 "protein phosphatase 1, regulatory (inhibitor) subunit 7|protein phosphatase 1, regulatory subunit 7" Protein phosphatase 1 regulatory subunits 694 1998-01-21 2015-11-18 2015-11-18 5510 ENSG00000115685 OTTHUMG00000133390 uc002wat.3 AF067136 NM_002712 "CCDS2546|CCDS63190|CCDS63192|CCDS63193|CCDS63194" Q15435 "7498485|7670491|10231361" MGI:1913635 RGD:1308169 PPP1R7 602877 +HGNC:9296 PPP1R8 protein phosphatase 1 regulatory subunit 8 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "ard-1|NIPP-1|PRO2047|ARD1|NIPP1" "RNase E|nuclear subunit of PP-1|nuclear inhibitor of protein phosphatase-1|activator of RNA decay|protein phosphatase 1 regulatory subunit 8" "protein phosphatase 1, regulatory (inhibitor) subunit 8|protein phosphatase 1, regulatory subunit 8" Protein phosphatase 1 regulatory subunits 694 1998-04-29 2015-11-18 2015-11-18 5511 ENSG00000117751 OTTHUMG00000003734 uc001bov.3 AF061959 NM_014110 "CCDS311|CCDS312|CCDS313" Q12972 "7524097|8473324" MGI:2140494 RGD:1306280 PPP1R8 602636 +HGNC:9297 PPP1R8P1 protein phosphatase 1 regulatory subunit 8 pseudogene 1 pseudogene pseudogene Approved 1p33 01p33 PPP1R8P "protein phosphatase 1, regulatory (inhibitor) subunit 8 pseudogene|protein phosphatase 1, regulatory (inhibitor) subunit 8 pseudogene 1|protein phosphatase 1, regulatory subunit 8 pseudogene 1" 1998-04-29 2011-08-19 2015-11-18 2015-11-18 5512 ENSG00000224986 OTTHUMG00000007792 AF064758 NG_001178 10103062 PGOHUM00000244016 +HGNC:14946 PPP1R9A protein phosphatase 1 regulatory subunit 9A protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "Neurabin-I|KIAA1222|FLJ20068" "protein phosphatase 1, regulatory (inhibitor) subunit 9A|protein phosphatase 1, regulatory subunit 9A" "Protein phosphatase 1 regulatory subunits|Sterile alpha motif domain containing|PDZ domain containing" "694|760|1220" 2001-06-29 2015-11-18 2015-11-18 55607 ENSG00000158528 OTTHUMG00000155566 uc003unp.5 AB033048 NM_001166160 "CCDS34683|CCDS55127|CCDS55128|CCDS55129" Q9ULJ8 10574462 MGI:2442401 RGD:632280 PPP1R9A 602468 +HGNC:9298 PPP1R9B protein phosphatase 1 regulatory subunit 9B protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "Spn|SPINO" "spinophilin|Neurabin-2" "PPP1R6|PPP1R9" "protein phosphatase 1, regulatory subunit 9B, spinophilin|protein phosphatase 1, regulatory (inhibitor) subunit 9B|protein phosphatase 1, regulatory subunit 9B" "Protein phosphatase 1 regulatory subunits|PDZ domain containing" "694|1220" 1997-10-10 2001-07-02 2015-11-18 2015-11-18 84687 ENSG00000108819 OTTHUMG00000162008 uc032fmj.2 AJ401189 NM_032595 CCDS74102 Q96SB3 9275233 MGI:2387581 RGD:632281 PPP1R9B 603325 +HGNC:9284 PPP1R10 protein phosphatase 1 regulatory subunit 10 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "PNUTS|FB19|CAT53|p99" "phosphatase 1 nuclear targeting subunit|HLA-C associated transcript 53" "protein phosphatase 1, regulatory (inhibitor) subunit 10|protein phosphatase 1, regulatory subunit 10" Protein phosphatase 1 regulatory subunits 694 1998-08-13 2015-11-18 2016-10-05 5514 ENSG00000204569 OTTHUMG00000031259 uc003nqn.3 Y13247 NM_002714 CCDS4681 Q96QC0 "9461602|9784381" MGI:1289273 RGD:620079 PPP1R10 603771 +HGNC:16325 PPP1R10P1 protein phosphatase 1 regulatory subunit 10 pseudogene 1 pseudogene pseudogene Approved 11q24.3 11q24.3 PPP1R10P "protein phosphatase 1, regulatory (inhibitor) subunit 10 pseudogene|protein phosphatase 1, regulatory (inhibitor) subunit 10 pseudogene 1|protein phosphatase 1, regulatory subunit 10 pseudogene 1" 2001-08-08 2011-08-19 2015-11-18 2015-11-18 100422381 ENSG00000255352 OTTHUMG00000165660 NG_024439 11948623 PGOHUM00000242542 +HGNC:9285 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "HCGV|Tctex5|HCG-V|CFAP255" TCTE5 protein phosphatase 1, regulatory (inhibitor) subunit 11 Protein phosphatase 1 regulatory subunits 694 2000-02-11 2015-11-18 2016-10-05 6992 ENSG00000204619 OTTHUMG00000031260 uc003npb.4 X81003 NM_021959 CCDS4671 O60927 "9843442|8781118" MGI:1923747 RGD:1303163 PPP1R11 606670 +HGNC:16326 PPP1R11P1 protein phosphatase 1 regulatory inhibitor subunit 11 pseudogene 1 pseudogene pseudogene Approved 1p36.12 01p36.12 protein phosphatase 1, regulatory (inhibitor) subunit 11 pseudogene 1 2001-08-08 2015-11-18 2015-11-18 94297 ENSG00000236216 OTTHUMG00000002940 NG_030207 11948623 PGOHUM00000244630 +HGNC:16327 PPP1R11P2 protein phosphatase 1 regulatory inhibitor subunit 11 pseudogene 2 pseudogene pseudogene Approved Xp11.21 Xp11.21 protein phosphatase 1, regulatory (inhibitor) subunit 11 pseudogene 2 2001-08-08 2015-11-18 2015-11-18 94298 ENSG00000231765 OTTHUMG00000021682 NG_009575 11948623 PGOHUM00000241800 +HGNC:7618 PPP1R12A protein phosphatase 1 regulatory subunit 12A protein-coding gene gene with protein product Approved 12q21.2-q21.31 12q21.2-q21.31 "MBS|M130" "myosin phosphatase-targeting subunit 1|myosin binding subunit" MYPT1 "protein phosphatase 1, regulatory (inhibitor) subunit 12A|protein phosphatase 1, regulatory subunit 12A" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 1997-12-23 2001-08-10 2015-11-18 2016-10-11 4659 ENSG00000058272 OTTHUMG00000170100 uc010sud.2 D87930 NM_002480 "CCDS44947|CCDS44948|CCDS58259|CCDS58260" O14974 9286714 MGI:1309528 RGD:620013 PPP1R12A 602021 +HGNC:7619 PPP1R12B protein phosphatase 1 regulatory subunit 12B protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "MGC87886|MGC131980|PP1bp55" "myosin phosphatase regulatory subunit|myosin phosphatase, target subunit 2" MYPT2 "protein phosphatase 1, regulatory (inhibitor) subunit 12B|protein phosphatase 1, regulatory subunit 12B" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 1998-07-13 2001-08-10 2015-11-18 2015-11-18 4660 ENSG00000077157 OTTHUMG00000041393 uc001gya.3 AB003062 NM_032105 "CCDS1426|CCDS44294|CCDS44295|CCDS53458|CCDS53459|CCDS73005|CCDS81416" O60237 9570949 MGI:1916417 RGD:1309287 PPP1R12B 603768 +HGNC:18498 PPP1R12BP1 protein phosphatase 1 regulatory subunit 12B pseudogene 1 pseudogene pseudogene Approved Yq11.23 Yq11.23 PPP1R12BPY1 PPP1R12BP "protein phosphatase 1, regulatory (inhibitor) subunit 12B Y-linked pseudogene|protein phosphatase 1, regulatory (inhibitor) subunit 12B pseudogene, Y-linked 1|protein phosphatase 1, regulatory subunit 12B pseudogene, Y-linked 1" 2002-05-22 2010-03-17 2015-11-18 2015-11-18 360021 ENSG00000229238 OTTHUMG00000036764 NG_004755 12815422 PGOHUM00000233885 +HGNC:23970 PPP1R12BP2 protein phosphatase 1 regulatory subunit 12B pseudogene 2 pseudogene pseudogene Approved Yq11.223 Yq11.223 "protein phosphatase 1, regulatory (inhibitor) subunit 12B Y-linked pseudogene 2|protein phosphatase 1, regulatory subunit 12B Y-linked pseudogene 2" 2010-03-17 2015-11-18 2015-11-18 360020 ENSG00000205936 OTTHUMG00000044061 NG_002939 12815422 PGOHUM00000234036 +HGNC:14947 PPP1R12C protein phosphatase 1 regulatory subunit 12C protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "DKFZP434D0412|p84|MBS85|p85" myosin-binding subunit 85 LENG3 "leukocyte receptor cluster (LRC) member 3|protein phosphatase 1, regulatory (inhibitor) subunit 12C|protein phosphatase 1, regulatory subunit 12C" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 2001-06-29 2015-11-18 2015-11-18 54776 ENSG00000125503 OTTHUMG00000180540 uc002qix.5 AF312028 NM_017607 CCDS12916 Q9BZL4 11399775 MGI:1924258 RGD:1584883 PPP1R12C 613245 +HGNC:16409 PPP1R12CP entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:14950 PPP1R13B protein phosphatase 1 regulatory subunit 13B protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "p53BP2-like|KIAA0771|p85|ASPP1" "protein phosphatase 1, regulatory (inhibitor) subunit 13B|protein phosphatase 1, regulatory subunit 13B" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 2001-06-29 2015-11-18 2015-11-18 23368 ENSG00000088808 OTTHUMG00000171647 uc001yof.2 AB018314 NM_015316 CCDS41997 Q96KQ4 9872452 MGI:1336199 RGD:1304651 PPP1R13B 606455 +HGNC:18838 PPP1R13L protein phosphatase 1 regulatory subunit 13 like protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "RAI|IASPP" "protein phosphatase 1, regulatory (inhibitor) subunit 13 like|protein phosphatase 1, regulatory subunit 13 like" Ankyrin repeat domain containing 403 2004-11-26 2015-11-18 2015-11-18 10848 ENSG00000104881 OTTHUMG00000181784 uc002pbo.4 AF078036 NM_006663 CCDS33050 Q8WUF5 10336463 MGI:3525053 PPP1R13L 607463 +HGNC:14871 PPP1R14A protein phosphatase 1 regulatory inhibitor subunit 14A protein-coding gene gene with protein product Approved 19q13.1 19q13.1 CPI-17 "17-kDa PKC-potentiated inhibitory protein of PP1|PKC-potentiated inhibitory protein of PP1|17-KDa protein" PPP1INL protein phosphatase 1, regulatory (inhibitor) subunit 14A Protein phosphatase 1 regulatory subunits 694 2001-05-23 2001-07-02 2015-11-18 2015-11-18 94274 ENSG00000167641 OTTHUMG00000181892 uc002ohq.3 AB056508 NM_033256 "CCDS12509|CCDS58660" Q96A00 11467857 MGI:1931139 RGD:620536 PPP1R14A 608153 +HGNC:9057 PPP1R14B protein phosphatase 1 regulatory inhibitor subunit 14B protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "SOM172|PNG|PHI-1" PLCB3N protein phosphatase 1, regulatory (inhibitor) subunit 14B Protein phosphatase 1 regulatory subunits 694 2000-03-29 2001-07-06 2015-11-18 2016-10-05 26472 ENSG00000173457 OTTHUMG00000167846 uc001nza.4 X91195 NM_138689 CCDS31596 Q96C90 "8838322|10606530" MGI:107682 RGD:628702 PPP1R14B 601140 +HGNC:9058 PPP1R14BP1 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 1 pseudogene pseudogene Approved 22q12 22q12 PLCB3NP protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 1 2000-03-29 2001-08-01 2015-11-18 2015-11-18 50516 AF030942 NG_001274 9556220 +HGNC:16329 PPP1R14BP2 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 2 pseudogene pseudogene Approved 2q33.3 02q33.3 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 2 2001-08-08 2015-11-18 2015-11-18 729406 ENSG00000213082 OTTHUMG00000154793 NG_030152 11948623 PGOHUM00000241090 +HGNC:16330 PPP1R14BP3 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 3 pseudogene pseudogene Approved 4q31.1 04q31.1 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 3 2001-08-08 2015-11-18 2015-11-18 100507617 ENSG00000179967 OTTHUMG00000161326 NG_030217 11948623 PGOHUM00000245708 +HGNC:16331 PPP1R14BP4 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 4 pseudogene pseudogene Approved 7p14.2 07p14.2 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 4 2001-08-08 2015-11-18 2015-11-18 94302 NG_030051 11948623 PGOHUM00000232650 +HGNC:16332 PPP1R14BP5 protein phosphatase 1 regulatory inhibitor subunit 14B pseudogene 5 pseudogene pseudogene Approved 6q22.32 06q22.32 protein phosphatase 1, regulatory (inhibitor) subunit 14B pseudogene 5 2001-08-08 2015-11-18 2015-11-18 442256 ENSG00000213133 OTTHUMG00000015517 NG_030184 11948623 PGOHUM00000243351 +HGNC:14952 PPP1R14C protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "CPI17-like|NY-BR-81|KEPI" kinase C-enhanced PP1 inhibitor protein phosphatase 1, regulatory (inhibitor) subunit 14C Protein phosphatase 1 regulatory subunits 694 2001-06-29 2015-11-18 2016-10-05 81706 ENSG00000198729 OTTHUMG00000015818 uc003qnt.4 AF308297 NM_030949 CCDS5226 Q8TAE6 11948623 MGI:1923392 RGD:620538 PPP1R14C 613242 +HGNC:14953 PPP1R14D protein phosphatase 1 regulatory inhibitor subunit 14D protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "CPI17-like|FLJ20251|GBPI-1|MGC119014|MGC119016" "gut and brain phosphatase inhibitor 1|PKC-dependent PP1 inhibitory protein" protein phosphatase 1, regulatory (inhibitor) subunit 14D Protein phosphatase 1 regulatory subunits 694 2001-06-29 2015-11-18 2016-10-05 54866 ENSG00000166143 OTTHUMG00000130064 uc001zmy.3 AK000258 NM_017726 "CCDS10066|CCDS45230" Q9NXH3 11948623 MGI:1919362 RGD:628891 PPP1R14D 613256 +HGNC:14375 PPP1R15A protein phosphatase 1 regulatory subunit 15A protein-coding gene gene with protein product Approved 19q13.2 19q13.2 GADD34 growth arrest and DNA-damage-inducible 34 "protein phosphatase 1, regulatory (inhibitor) subunit 15A|protein phosphatase 1, regulatory subunit 15A" Protein phosphatase 1 regulatory subunits 694 2001-06-29 2015-11-18 2015-11-18 23645 ENSG00000087074 OTTHUMG00000183330 uc002pky.5 U83981 NM_014330 CCDS12738 O75807 "9153226|9413226" MGI:1927072 RGD:621526 PPP1R15A 611048 +HGNC:14951 PPP1R15B protein phosphatase 1 regulatory subunit 15B protein-coding gene gene with protein product Approved 1q32.1 01q32.1 FLJ14744 "protein phosphatase 1, regulatory (inhibitor) subunit 15B|protein phosphatase 1, regulatory subunit 15B" Protein phosphatase 1 regulatory subunits 694 2001-06-29 2015-11-18 2015-11-18 84919 ENSG00000158615 OTTHUMG00000036105 uc001hav.5 AK027650 NM_032833 CCDS1445 Q5SWA1 11948623 MGI:2444211 RGD:1307944 PPP1R15B 613257 460842 +HGNC:14941 PPP1R16A protein phosphatase 1 regulatory subunit 16A protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "MGC14333|MYPT3" "protein phosphatase 1, regulatory (inhibitor) subunit 16A|protein phosphatase 1, regulatory subunit 16A" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 2001-06-29 2015-11-18 2015-11-18 84988 ENSG00000160972 OTTHUMG00000165173 uc003zdd.4 NM_032902 CCDS6429 Q96I34 11948623 MGI:1920312 RGD:1307962 PPP1R16A 609172 +HGNC:15850 PPP1R16B protein phosphatase 1 regulatory subunit 16B protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "KIAA0823|TIMAP|ANKRD4" "TGF-beta-inhibited membrane-associated protein|ankyrin repeat domain protein 4" "protein phosphatase 1, regulatory (inhibitor) subunit 16B|protein phosphatase 1, regulatory subunit 16B" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 2001-06-29 2015-11-18 2015-11-18 26051 ENSG00000101445 OTTHUMG00000032465 uc002xje.3 AB020630 NM_015568 "CCDS13309|CCDS54462" Q96T49 "10048485|12055102" MGI:2151841 RGD:1589460 PPP1R16B 613275 +HGNC:16973 PPP1R17 protein phosphatase 1 regulatory subunit 17 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 GSBS G-substrate C7orf16 "chromosome 7 open reading frame 16|protein phosphatase 1, regulatory subunit 17" Protein phosphatase 1 regulatory subunits 694 2003-03-24 2011-10-11 2015-11-18 2016-10-05 10842 ENSG00000106341 OTTHUMG00000128629 uc003tcl.4 AF071789 NM_006658 "CCDS5436|CCDS47570" O96001 "10051666|9920894" MGI:1333876 RGD:628647 604088 +HGNC:29413 PPP1R18 protein phosphatase 1 regulatory subunit 18 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 phostensin protein phosphatase 1 F-actin cytoskeleton targeting subunit KIAA1949 "KIAA1949|protein phosphatase 1, regulatory subunit 18" Protein phosphatase 1 regulatory subunits 694 2004-03-02 2011-10-11 2015-11-18 2016-10-05 170954 ENSG00000146112 OTTHUMG00000031237 uc003nrb.4 AK097089 NM_133471 CCDS43444 Q6NYC8 11853319 MGI:1923698 RGD:1309543 610990 +HGNC:30595 PPP1R21 protein phosphatase 1 regulatory subunit 21 protein-coding gene gene with protein product Approved 2p16.3 02p16.3 FLJ16566 "CCDC128|KLRAQ1" "coiled-coil domain containing 128|KLRAQ motif containing 1|protein phosphatase 1, regulatory subunit 21" Protein phosphatase 1 regulatory subunits 694 2006-08-18 2011-10-11 2015-11-18 2015-11-18 129285 ENSG00000162869 OTTHUMG00000129167 uc002rwm.4 AY134855 NM_152994 "CCDS1839|CCDS46278|CCDS54358" Q6ZMI0 12477932 MGI:1921075 RGD:1565310 PPP1R21 +HGNC:29089 PPP1R26 protein phosphatase 1 regulatory subunit 26 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "DRIM/UTP20 interacting protein|1A6/DRIM (down-regulated in metastasis) interacting protein" KIAA0649 "KIAA0649|protein phosphatase 1, regulatory subunit 26" Protein phosphatase 1 regulatory subunits 694 2004-01-28 2011-10-11 2015-11-18 2015-11-18 9858 ENSG00000196422 OTTHUMG00000020904 uc064wyk.1 AB014549 NM_014811 CCDS6988 Q5T8A7 "9734811|16053918" MGI:2685193 RGD:1595050 614056 +HGNC:48717 PPP1R26-AS1 PPP1R26 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 2013-06-07 2013-06-07 100506599 ENSG00000225361 OTTHUMG00000020905 NR_038969 +HGNC:42015 PPP1R26P1 protein phosphatase 1 regulatory subunit 26 pseudogene 1 pseudogene pseudogene Approved 13q14.2 13q14.2 KIAA0649P1 "KIAA0649 pseudogene 1|protein phosphatase 1, regulatory subunit 26 pseudogene 1" 2011-06-01 2011-10-11 2015-11-18 2015-11-18 100418740 ENSG00000238086 OTTHUMG00000016899 NG_024854 PGOHUM00000248394 +HGNC:42016 PPP1R26P2 protein phosphatase 1 regulatory subunit 26 pseudogene 2 pseudogene pseudogene Approved 22q11.21 22q11.21 KIAA0649P2 "KIAA0649 pseudogene 2|protein phosphatase 1, regulatory subunit 26 pseudogene 2" 2011-06-01 2011-10-11 2015-11-18 2015-11-18 100133064 ENSG00000273643 OTTHUMG00000188358 NG_022867 PGOHUM00000297452 +HGNC:42017 PPP1R26P3 protein phosphatase 1 regulatory subunit 26 pseudogene 3 pseudogene pseudogene Approved 22q11.21 22q11.21 KIAA0649P3 "KIAA0649 pseudogene 3|protein phosphatase 1, regulatory subunit 26 pseudogene 3" 2011-06-01 2011-10-11 2015-11-18 2015-11-18 100132173 ENSG00000275060 OTTHUMG00000188349 NG_022868 PGOHUM00000297449 +HGNC:42018 PPP1R26P4 protein phosphatase 1 regulatory subunit 26 pseudogene 4 pseudogene pseudogene Approved 22q11.21 22q11.21 KIAA0649P4 "KIAA0649 pseudogene 4|protein phosphatase 1, regulatory subunit 26 pseudogene 4" 2011-06-01 2011-10-11 2015-11-18 2016-07-22 100132295 ENSG00000278008 OTTHUMG00000188024 NG_022874 PGOHUM00000297627 +HGNC:42019 PPP1R26P5 protein phosphatase 1 regulatory subunit 26 pseudogene 5 pseudogene pseudogene Approved 22q11.21 22q11.21 KIAA0649P5 "KIAA0649 pseudogene 5|protein phosphatase 1, regulatory subunit 26 pseudogene 5" 2011-06-01 2011-10-11 2015-11-18 2015-11-18 100133040 ENSG00000232771 OTTHUMG00000150826 NG_022876 PGOHUM00000246426 +HGNC:16813 PPP1R27 protein phosphatase 1 regulatory subunit 27 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 toonin DYSFIP1 "dysferlin-interacting protein 1 (toonin)|dysferlin interacting protein 1 (toonin)|dysferlin interacting protein 1|protein phosphatase 1, regulatory subunit 27" "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 2001-10-16 2011-10-11 2015-11-18 2015-11-18 116729 ENSG00000182676 OTTHUMG00000177916 uc002kbj.2 AF434846 NM_001007533 CCDS32767 Q86WC6 MGI:1915951 RGD:1308861 +HGNC:28869 PPP1R32 protein phosphatase 1 regulatory subunit 32 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "IIIG9|FLJ32771" C11orf66 "chromosome 11 open reading frame 66|protein phosphatase 1, regulatory subunit 32" Protein phosphatase 1 regulatory subunits 694 2006-03-10 2011-10-11 2015-11-18 2015-11-18 220004 ENSG00000162148 OTTHUMG00000168176 uc001nru.3 AK057333 NM_145017 "CCDS8008|CCDS53641" Q7Z5V6 12477932 MGI:1915002 RGD:708532 +HGNC:28320 PPP1R35 protein phosphatase 1 regulatory subunit 35 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 MGC22793 C7orf47 "chromosome 7 open reading frame 47|protein phosphatase 1, regulatory subunit 35" Protein phosphatase 1 regulatory subunits 694 2006-08-30 2011-10-11 2015-11-18 2015-11-18 221908 ENSG00000160813 OTTHUMG00000159540 uc003uuy.2 BC026269 NM_145030 CCDS5694 Q8TAP8 12477932 MGI:1922853 RGD:1584367 +HGNC:20097 PPP1R36 protein phosphatase 1 regulatory subunit 36 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 C14orf50 "chromosome 14 open reading frame 50|protein phosphatase 1, regulatory subunit 36" Protein phosphatase 1 regulatory subunits 694 2002-12-18 2011-10-11 2015-11-18 2016-10-05 145376 ENSG00000165807 OTTHUMG00000141316 uc001xhl.1 NM_172365 CCDS9767 Q96LQ0 MGI:2684916 RGD:1309051 +HGNC:27607 PPP1R37 protein phosphatase 1 regulatory subunit 37 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 LRRC68 "leucine rich repeat containing 68|protein phosphatase 1, regulatory subunit 37" Protein phosphatase 1 regulatory subunits 694 2008-06-11 2011-10-11 2015-11-18 2015-11-18 284352 ENSG00000104866 OTTHUMG00000168143 uc021uvs.2 BC035704 NM_173634 CCDS56096 O75864 12477932 MGI:2687042 RGD:1595870 PPP1R37 +HGNC:33732 PPP1R42 protein phosphatase 1 regulatory subunit 42 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 "dtr|TLLR" testis leucine-rich repeat LRRC67 "leucine rich repeat containing 67|protein phosphatase 1, regulatory subunit 42" Protein phosphatase 1 regulatory subunits 694 2008-06-11 2011-10-11 2015-11-18 2016-10-05 286187 ENSG00000178125 OTTHUMG00000164745 uc003xxc.4 BC055413 NM_001013626 CCDS34902 Q7Z4L9 MGI:1921138 RGD:1585679 PPP1R42 +HGNC:9299 PPP2CA protein phosphatase 2 catalytic subunit alpha protein-coding gene gene with protein product Approved 5q31.1 05q31.1 PP2Calpha protein phosphatase 2A catalytic subunit, alpha isoform "protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform|protein phosphatase 2, catalytic subunit, alpha isozyme" Protein phosphatase catalytic subunits 693 1992-11-10 2016-02-10 2016-02-10 5515 ENSG00000113575 OTTHUMG00000129119 uc003kze.4 NM_002715 CCDS4173 P67775 8383590 MGI:1321159 RGD:3380 PPP2CA 176915 3.1.3.16 +HGNC:9300 PPP2CB protein phosphatase 2 catalytic subunit beta protein-coding gene gene with protein product Approved 8p12 08p12 PP2Abeta protein phosphatase 2A catalytic subunit, beta isoform "protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform|protein phosphatase 2, catalytic subunit, beta isozyme" Protein phosphatase catalytic subunits 693 1992-11-10 2016-02-10 2016-02-10 5516 ENSG00000104695 OTTHUMG00000163949 uc003xik.4 NM_001009552 CCDS6079 P62714 8383590 MGI:1321161 RGD:3381 PPP2CB 176916 3.1.3.16 +HGNC:9301 PPP2CBP1 protein phosphatase 2 catalytic subunit beta pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 PPP2CBP "protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform pseudogene|protein phosphatase 2, catalytic subunit, beta isozyme pseudogene|protein phosphatase 2, catalytic subunit, beta isozyme pseudogene 1" 1992-11-10 2010-03-17 2016-02-10 2016-02-10 5517 NG_004793 8383590 PGOHUM00000249065 +HGNC:9302 PPP2R1A protein phosphatase 2 scaffold subunit Aalpha protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "PR65A|PP2A-Aalpha" "protein phosphatase 2A, regulatory subunit A, alpha isoform|protein phosphatase 2, 65kDa regulatory subunit A" protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform Protein phosphatase 2 scaffold subunits 1266 1993-01-25 2016-05-13 2016-10-05 5518 ENSG00000105568 OTTHUMG00000137367 uc002pyp.4 NM_014225 CCDS12849 P30153 MGI:1926334 RGD:620907 PPP2R1A 605983 460669 3.1.3.16 +HGNC:9303 PPP2R1B protein phosphatase 2 scaffold subunit Abeta protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "PR65B|PP2A-Abeta" "PP2A-A-beta|protein phosphatase 2A, regulatory subunit A, beta isoform" "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform|protein phosphatase 2 regulatory subunit A, beta" Protein phosphatase 2 scaffold subunits 1266 1993-01-25 2016-05-13 2016-05-13 5519 ENSG00000137713 OTTHUMG00000166741 uc001plw.2 AF087438 NM_002716 "CCDS8348|CCDS8349|CCDS53706|CCDS53707|CCDS53708" P30154 "2159327|9795170" MGI:1920949 RGD:1304764 PPP2R1B 603113 3.1.3.16 +HGNC:9304 PPP2R2A protein phosphatase 2 regulatory subunit Balpha protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "PR52A|PR55A|B55A" PP2A subunit B isoform alpha protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), alpha isoform "WD repeat domain containing|Protein phosphatase 2 regulatory subunits" "362|696" 1993-01-25 2016-05-13 2016-05-13 5520 ENSG00000221914 OTTHUMG00000163850 uc003xeu.4 M64929 NM_002717 "CCDS34867|CCDS55213" P63151 1849734 MGI:1919228 RGD:620919 PPP2R2A 604941 3.1.3.16 +HGNC:9305 PPP2R2B protein phosphatase 2 regulatory subunit Bbeta protein-coding gene gene with protein product Approved 5q32 05q32 "PR55-BETA|PR52B" PP2A subunit B isoform beta SCA12 "spinocerebellar ataxia 12|protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), beta isoform" "WD repeat domain containing|Protein phosphatase 2 regulatory subunits" "362|696" 1993-01-25 2016-05-13 2016-05-13 5521 ENSG00000156475 OTTHUMG00000163381 uc003loe.6 M64930 NM_181678 "CCDS4283|CCDS4284|CCDS43380|CCDS64281|CCDS64282" Q00005 "1849734|10581021" MGI:1920180 RGD:631441 PPP2R2B 604325 117973 3.1.3.16 +HGNC:42984 PPP2R2B-IT1 PPP2R2B intronic transcript 1 non-coding RNA RNA, long non-coding Approved 5q32 05q32 PPP2R2B intronic transcript 1 (non-protein coding) 2011-09-14 2015-02-25 2015-02-25 100874361 ENSG00000249553 OTTHUMG00000129687 uc031slr.1 NR_047115 +HGNC:9306 PPP2R2C protein phosphatase 2 regulatory subunit Bgamma protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "PR52|IMYPNO|MGC33570|PR55G" PP2A subunit B isoform gamma protein phosphatase 2 (formerly 2A), regulatory subunit B (PR 52), gamma isoform "WD repeat domain containing|Protein phosphatase 2 regulatory subunits" "362|696" 1993-01-25 2016-05-13 2016-05-13 5522 ENSG00000074211 OTTHUMG00000090445 uc003gjc.4 AF086924 NM_181876 "CCDS3388|CCDS56304|CCDS56305|CCDS3387" Q9Y2T4 "10574460|10945473" MGI:2442660 RGD:620920 PPP2R2C 605997 3.1.3.16 +HGNC:23732 PPP2R2D protein phosphatase 2 regulatory subunit Bdelta protein-coding gene gene with protein product Approved 10q26.3 10q26.3 MDS026 PP2A subunit B isoform delta protein phosphatase 2, regulatory subunit B, delta isoform "WD repeat domain containing|Protein phosphatase 2 regulatory subunits" "362|696" 2003-12-04 2016-05-13 2016-05-13 55844 ENSG00000175470 OTTHUMG00000019277 uc031wxk.2 AF220046 NM_018461 CCDS73224 Q66LE6 10819331 MGI:1289252 RGD:708356 PPP2R2D 613992 +HGNC:44544 PPP2R2DP1 protein phosphatase 2 regulatory subunit B, delta pseudogene 1 pseudogene pseudogene Approved 3p22.2 03p22.2 protein phosphatase 2, regulatory subunit B, delta pseudogene 1 2012-11-15 2015-11-18 2015-11-18 100327036 ENSG00000231668 OTTHUMG00000155979 NG_016292 PGOHUM00000237997 +HGNC:9307 PPP2R3A protein phosphatase 2 regulatory subunit B''alpha protein-coding gene gene with protein product Approved 3q22.2-q22.3 03q22.2-q22.3 PPP2R3 protein phosphatase 2 (formerly 2A), regulatory subunit B'' (PR 72), alpha isoform and (PR 130), beta isoform "Protein phosphatase 2 regulatory subunits|EF-hand domain containing" "696|863" 1993-01-25 2002-04-26 2016-05-13 2016-10-11 5523 ENSG00000073711 OTTHUMG00000159766 uc003eqv.3 L12146 NM_002718 "CCDS3087|CCDS3088|CCDS54642" Q06190 8392071 MGI:2442104 RGD:1306958 PPP2R3A 604944 3.1.3.16 +HGNC:13417 PPP2R3B protein phosphatase 2 regulatory subunit B''beta protein-coding gene gene with protein product Approved Xp22.3 and Yp11.3 Xp22.3 and Yp11.3 "PPP2R3LY|PR48" PPP2R3L protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta "Protein phosphatase 2 regulatory subunits|Pseudoautosomal region 1|EF-hand domain containing" "696|715|863" 2002-04-19 2016-05-13 2016-05-13 28227 ENSG00000167393 OTTHUMG00000021052 uc004fot.4 AF215840 NM_013239 CCDS14104 Q9Y5P8 11173861 RGD:1588134 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PPP2R3B PPP2R3B 300339 +HGNC:17485 PPP2R3C protein phosphatase 2 regulatory subunit B''gamma protein-coding gene gene with protein product Approved 14q13.2 14q13.2 "FLJ20644|G4-1|G5PR" C14orf10 "chromosome 14 open reading frame 10|protein phosphatase 2 (formerly 2A), regulatory subunit B''" Protein phosphatase 2 regulatory subunits 696 2002-11-18 2007-01-22 2016-05-13 2016-05-13 55012 ENSG00000092020 OTTHUMG00000140224 uc001wss.4 AK000651 NM_017917 CCDS9654 Q969Q6 "12167160|16129705" MGI:1930009 RGD:1309207 PPP2R3C 615902 +HGNC:9309 PPP2R5A protein phosphatase 2 regulatory subunit B'alpha protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "PR61A|B56A" protein phosphatase 2, regulatory subunit B (B56), alpha isoform Protein phosphatase 2 regulatory subunits 696 1996-05-08 2016-05-13 2016-10-05 5525 ENSG00000066027 OTTHUMG00000036750 uc001hjb.3 BC022474 NM_006243 "CCDS1503|CCDS55686" Q15172 7592815 MGI:2388479 RGD:1308022 PPP2R5A 601643 +HGNC:9310 PPP2R5B protein phosphatase 2 regulatory subunit B'beta protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "FLJ35411|B56B|PR61B" "PP2A, B subunit, B' beta isoform|PP2A, B subunit, B56 beta isoform|PP2A, B subunit, PR61 beta isoform|PP2A, B subunit, R5 beta isoform|serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, beta isoform" protein phosphatase 2, regulatory subunit B (B56), beta isoform Protein phosphatase 2 regulatory subunits 696 1996-05-08 2016-05-13 2016-10-05 5526 ENSG00000068971 OTTHUMG00000150043 uc001oby.4 L42374 NM_006244 CCDS8085 Q15173 7592815 MGI:2388480 RGD:727786 PPP2R5B 601644 +HGNC:9311 PPP2R5C protein phosphatase 2 regulatory subunit B'gamma protein-coding gene gene with protein product Approved 14q32.31 14q32.31 "B56G|PR61G" protein phosphatase 2, regulatory subunit B (B56), gamma isoform Protein phosphatase 2 regulatory subunits 696 1996-05-08 2016-05-13 2016-05-13 5527 ENSG00000078304 OTTHUMG00000171597 uc001yko.4 L42375 NM_002719 "CCDS9964|CCDS9965|CCDS45163|CCDS53911|CCDS53912" Q13362 7592815 MGI:1349475 RGD:1585097 PPP2R5C 601645 +HGNC:17835 PPP2R5CP protein phosphatase 2 regulatory subunit B', gamma pseudogene pseudogene pseudogene Approved 3p21.3 03p21.3 "protein phosphatase 2, regulatory subunit B (B56), gamma isoform pseudogene|protein phosphatase 2, regulatory subunit B', gamma isoform pseudogene|protein phosphatase 2, regulatory subunit B', gamma pseudogene" 2002-01-18 2015-11-18 2015-11-18 140921 AF411591 NG_001307 +HGNC:9312 PPP2R5D protein phosphatase 2 regulatory subunit B'delta protein-coding gene gene with protein product Approved 6p21.1 06p21.1 B56D protein phosphatase 2, regulatory subunit B (B56), delta isoform Protein phosphatase 2 regulatory subunits 696 1996-05-08 2016-05-13 2016-05-13 5528 ENSG00000112640 OTTHUMG00000014716 uc003oth.5 L76702 NM_006245 "CCDS4878|CCDS43464|CCDS55002" Q14738 7592815 MGI:2388481 RGD:1306666 PPP2R5D 601646 460676 +HGNC:9313 PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon protein-coding gene gene with protein product Approved 14q23.2 14q23.2 protein phosphatase 2, regulatory subunit B (B56), epsilon isoform Protein phosphatase 2 regulatory subunits 696 1996-05-08 2016-05-13 2016-05-13 5529 ENSG00000154001 OTTHUMG00000140341 uc001xgd.3 L76703 NM_006246 "CCDS9758|CCDS61467|CCDS61468" Q16537 7592815 MGI:1349473 RGD:1305657 PPP2R5E 601647 +HGNC:9314 PPP3CA protein phosphatase 3 catalytic subunit alpha protein-coding gene gene with protein product Approved 4q24 04q24 "CNA1|PPP2B" "calcineurin A alpha|protein phosphatase 2B, catalytic subunit, alpha isoform" "CALN|CALNA" "protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha)|protein phosphatase 3 (formerly 2B), catalytic subunit, alpha isoform|protein phosphatase 3, catalytic subunit, alpha isozyme" Protein phosphatase catalytic subunits 693 1990-06-26 2016-02-10 2016-02-10 5530 ENSG00000138814 OTTHUMG00000133839 uc011cen.2 NM_000944 "CCDS34037|CCDS47113|CCDS47114" Q08209 "2848250|1659808" MGI:107164 RGD:3382 PPP3CA 114105 3.1.3.16 +HGNC:9315 PPP3CB protein phosphatase 3 catalytic subunit beta protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "CALNA2|CNA2|PP2Bbeta" "calcineurin A beta|protein phosphatase 2B, catalytic subunit, beta isoform" CALNB "protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta)|protein phosphatase 3 (formerly 2B), catalytic subunit, beta isoform|protein phosphatase 3, catalytic subunit, beta isozyme" Protein phosphatase catalytic subunits 693 1992-11-09 2016-02-10 2016-02-10 5532 ENSG00000107758 OTTHUMG00000018472 uc001jue.4 M29551 NM_021132 "CCDS7328|CCDS44436|CCDS44437" P16298 "1659808|2558868" MGI:107163 RGD:3383 PPP3CB 114106 3.1.3.16 +HGNC:50750 PPP3CB-AS1 PPP3CB antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 10q22.2 10q22.2 USP54-AS1 2014-06-16 2014-06-16 101929145 ENSG00000221817 OTTHUMG00000018470 NR_132104 +HGNC:9316 PPP3CC protein phosphatase 3 catalytic subunit gamma protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "CALNA3|PP2Bgamma" "calcineurin A gamma|protein phosphatase 2B, catalytic subunit, gamma isoform" "protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform (calcineurin A gamma)|protein phosphatase 3 (formerly 2B), catalytic subunit, gamma isoform|protein phosphatase 3, catalytic subunit, gamma isozyme" Protein phosphatase catalytic subunits 693 1993-01-22 2016-02-10 2016-02-10 5533 ENSG00000120910 OTTHUMG00000163802 uc003xbs.4 NM_005605 "CCDS34859|CCDS59094|CCDS59093" P48454 1339277 MGI:107162 RGD:621616 PPP3CC 114107 3.1.3.16 +HGNC:9317 PPP3R1 protein phosphatase 3 regulatory subunit B, alpha protein-coding gene gene with protein product Approved 2p14 02p14 "CALNB1|CNB|CNB1" "calcineurin B, type I (19kDa)|protein phosphatase 2B regulatory subunit B alpha" "protein phosphatase 3 (formerly 2B), regulatory subunit B (19kD), alpha isoform (calcineurin B, type I)|protein phosphatase 3 (formerly 2B), regulatory subunit B, 19kDa, alpha isoform (calcineurin B, type I)|protein phosphatase 3 (formerly 2B), regulatory subunit B, alpha isoform|protein phosphatase 3, regulatory subunit B, alpha" "Protein phosphatase 3 regulatory subunits|EF-hand domain containing" "697|863" 1993-01-25 2015-11-18 2015-11-18 5534 ENSG00000221823 OTTHUMG00000129561 uc002sei.2 M30773 NM_000945 CCDS46310 P63098 "8978785|2558868" MGI:107172 RGD:69230 PPP3R1 601302 3.1.3.16 +HGNC:9318 PPP3R2 protein phosphatase 3 regulatory subunit B, beta protein-coding gene gene with protein product Approved 9q31.1 09q31.1 PPP3RL "protein phosphatase 3, regulatory subunit B (calcineurin B)-like|calcineurin B, type II (19kDa)|protein phosphatase 2B regulatory subunit 2" "protein phosphatase 3 (formerly 2B), regulatory subunit B (19kD), beta isoform (calcineurin B, type II)|protein phosphatase 3 (formerly 2B), regulatory subunit B, 19kDa, beta isoform (calcineurin B, type II)|protein phosphatase 3 (formerly 2B), regulatory subunit B, beta isoform|protein phosphatase 3, regulatory subunit B, beta" "Protein phosphatase 3 regulatory subunits|EF-hand domain containing" "697|863" 1993-01-25 2015-11-18 2016-10-05 5535 ENSG00000188386 OTTHUMG00000020386 uc004bbr.3 AF145026 NM_147180 CCDS6759 Q96LZ3 15865209 MGI:107171 RGD:69232 PPP3R2 613821 3.1.3.16 +HGNC:9319 PPP4C protein phosphatase 4 catalytic subunit protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "PP4|PPX" protein phosphatase X, catalytic subunit "protein phosphatase 4 (formerly X), catalytic subunit|protein phosphatase 4, catalytic subunit" Protein phosphatase catalytic subunits 693 1993-01-22 2015-11-17 2015-11-17 5531 ENSG00000149923 OTTHUMG00000132113 uc002dwf.4 NM_002720 CCDS10669 P60510 9177794 MGI:1891763 RGD:621225 PPP4C 602035 3.1.3.16 +HGNC:9320 PPP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding gene gene with protein product Approved 18p11.22 18p11.22 PP4R1 protein phosphatase 4, regulatory subunit 1 Protein phosphatase 4 regulatory subunits 698 1999-09-30 2015-11-17 2015-11-17 9989 ENSG00000154845 OTTHUMG00000137466 uc002koe.3 AF111106 NM_005134 "CCDS42412|CCDS42413" Q8TF05 10026142 MGI:1917601 RGD:619798 PPP4R1 604908 +HGNC:51112 PPP4R1-AS1 PPP4R1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18p11.22 18p11.22 2014-07-29 2014-07-29 101927323 ENSG00000263627 OTTHUMG00000178597 NR_110774 +HGNC:15755 PPP4R1L protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudogene pseudogene Approved 20q13.32 20q13.32 "bA196N14.4|bA196N14.5|PPP4R1P1" C20orf192 "protein phosphatase 4, regulatory subunit 1-like|protein phosphatase 4, regulatory subunit 1-like (pseudogene)" 2001-09-17 2015-11-17 2015-11-17 55370 ENSG00000124224 OTTHUMG00000032838 AF119843 NR_003505 Q9P1A2 "14702039|11780052" PPP4R1L PGOHUM00000297027 +HGNC:18296 PPP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding gene gene with protein product Approved 3p13 03p13 protein phosphatase 4, regulatory subunit 2 Protein phosphatase 4 regulatory subunits 698 2002-06-13 2015-11-17 2016-10-05 151987 ENSG00000163605 OTTHUMG00000158816 uc003dph.2 AJ271448 NM_174907 "CCDS2917|CCDS82805" Q9NY27 10769191 MGI:3027896 RGD:1307312 PPP4R2 613822 +HGNC:20219 PPP4R3A protein phosphatase 4 regulatory subunit 3A protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "FLJ20707|MSTP033|FLFL1|smk-1|smk1|PP4R3" "KIAA2010|SMEK1" "KIAA2010|SMEK homolog 1, suppressor of mek1 (Dictyostelium)|protein phosphatase 4, regulatory subunit 3A" 2003-11-21 2015-06-26 2015-11-17 2015-11-17 55671 ENSG00000100796 AK000714 NM_032560 "CCDS9895|CCDS61532" Q6IN85 "16085932|18487071" MGI:1915984 RGD:1309059 610351 +HGNC:29267 PPP4R3B protein phosphatase 4 regulatory subunit 3B protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "PSY2|FLFL2|KIAA1387|FLJ31474" SMEK2 "SMEK homolog 2, suppressor of mek1 (Dictyostelium)|protein phosphatase 4, regulatory subunit 3B" 2006-10-12 2015-06-26 2015-11-17 2015-11-17 57223 ENSG00000275052 OTTHUMG00000129336 AB037808 NM_020463 "CCDS1855|CCDS46289|CCDS62913" Q5MIZ7 "16085932|18614045" MGI:2144474 RGD:1309450 610352 +HGNC:33146 PPP4R3CP protein phosphatase 4 regulatory subunit 3C, pseudogene pseudogene pseudogene Approved Xp21.3 Xp21.3 "FLJ32867|FLFL3P|smk1" SMEK3P "SMEK homolog 3, suppressor of mek1 (Dictyostelium) pseudogene|protein phosphatase 4, regulatory subunit 3C, pseudogene" 2006-10-12 2015-06-26 2015-11-17 2015-11-17 139420 ENSG00000224960 OTTHUMG00000021300 NR_002784 Q6ZMV5 PGOHUM00000304537 +HGNC:23788 PPP4R4 protein phosphatase 4 regulatory subunit 4 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 "PP4R4|CFAP14" cilia and flagella associated protein 14 KIAA1622 KIAA1622 Protein phosphatase 4 regulatory subunits 698 2003-12-10 2008-09-16 2016-07-01 2016-07-01 57718 ENSG00000119698 OTTHUMG00000171344 uc001ycs.1 "AB046842|BC068491" NM_058237 "CCDS9921|CCDS9922" Q6NUP7 18715871 MGI:1921771 RGD:1560932 PPP4R4 616790 +HGNC:9322 PPP5C protein phosphatase 5 catalytic subunit protein-coding gene gene with protein product Approved 19q13.32 19q13.32 PP5 PPP5 protein phosphatase 5, catalytic subunit "Protein phosphatase catalytic subunits|Tetratricopeptide repeat domain containing" "693|769" 1993-02-05 2016-02-10 2016-10-05 5536 ENSG00000011485 OTTHUMG00000134287 uc002pem.4 NM_006247 CCDS12684 P53041 "8666404|9195923" MGI:102666 RGD:68415 PPP5C 600658 3.1.3.16 +HGNC:44209 PPP5D1 PPP5 tetratricopeptide repeat domain containing 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 Tetratricopeptide repeat domain containing 769 2012-07-20 2012-07-20 2016-07-26 100506012 ENSG00000230510 OTTHUMG00000183425 uc061agc.1 NM_001205281 E7EU14 +HGNC:9323 PPP6C protein phosphatase 6 catalytic subunit protein-coding gene gene with protein product Approved 9q33.3 09q33.3 PP6 protein phosphatase 6, catalytic subunit Protein phosphatase catalytic subunits 693 1996-12-19 2016-02-10 2016-02-10 5537 ENSG00000119414 OTTHUMG00000020671 uc004bpg.5 AF035158 NM_016294 "CCDS6861|CCDS48018|CCDS48019" O00743 9143513 MGI:1915107 RGD:708460 PPP6C 612725 +HGNC:34077 PPP6CP protein phosphatase 6 catalytic subunit pseudogene pseudogene pseudogene Approved Xq22.3 Xq22.3 protein phosphatase 6, catalytic subunit pseudogene 2008-04-17 2016-02-10 2016-02-10 100144631 NG_007543 +HGNC:29195 PPP6R1 protein phosphatase 6 regulatory subunit 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 SAP190 "KIAA1115|SAPS1" "KIAA1115|SAPS domain family, member 1|protein phosphatase 6, regulatory subunit 1" Protein phosphatase 6 regulatory subunits 699 2004-02-10 2010-06-28 2015-11-18 2015-11-18 22870 ENSG00000105063 OTTHUMG00000180704 uc002qjw.5 AB029038 NM_014931 CCDS46186 Q9UPN7 16769727 MGI:2442163 RGD:1311409 PPP6R1 610875 +HGNC:19253 PPP6R2 protein phosphatase 6 regulatory subunit 2 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "dJ579N16.1|SAP190" "KIAA0685|SAPS2" "KIAA0685|SAPS domain family, member 2|protein phosphatase 6, regulatory subunit 2" Protein phosphatase 6 regulatory subunits 699 2003-11-21 2010-06-28 2015-11-18 2015-11-18 9701 ENSG00000100239 OTTHUMG00000150199 uc003bkz.3 AB014585 NM_014678 "CCDS33681|CCDS56235|CCDS56236|CCDS74881" O75170 16769727 MGI:1918724 RGD:1563990 PPP6R2 610877 +HGNC:39605 PPP6R2P1 protein phosphatase 6 regulatory subunit 2 pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 protein phosphatase 6, regulatory subunit 2 pseudogene 1 2011-03-17 2015-11-18 2015-11-18 100631381 ENSG00000233442 OTTHUMG00000074233 NG_029318 PGOHUM00000239142 +HGNC:1173 PPP6R3 protein phosphatase 6 regulatory subunit 3 protein-coding gene gene with protein product Approved 11q13 11q13 "SAPLa|DKFZp781E2374|DKFZp781O2362|DKFZp781E17107|SAP190|SAPL|PP6R3|FLJ11058|FLJ43065|KIAA1558|MGC125711|MGC125712" sporulation-induced transcript 4-associated protein "C11orf23|SAPS3" "chromosome 11 open reading frame 23|SAPS domain family, member 3|protein phosphatase 6, regulatory subunit 3" Protein phosphatase 6 regulatory subunits 699 2000-05-23 2010-06-28 2015-11-18 2015-11-18 55291 ENSG00000110075 OTTHUMG00000167596 uc001onw.4 AF264779 NM_018312 "CCDS8182|CCDS53671|CCDS53672|CCDS53673|CCDS53674|CCDS53675" Q5H9R7 "11401438|16769727" MGI:1921807 RGD:1307145 PPP6R3 610879 +HGNC:30025 PPRC1 peroxisome proliferator-activated receptor gamma, coactivator-related 1 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "PRC|KIAA0595|MGC74642" peroxisome proliferative activated receptor, gamma, coactivator-related 1 RNA binding motif containing 725 2004-02-19 2006-10-17 2014-11-19 23082 ENSG00000148840 OTTHUMG00000018948 uc001kum.5 AF325193 NM_015062 "CCDS7529|CCDS73186" Q5VV67 "9628581|11340167" MGI:2385096 RGD:1309688 PPRC1 +HGNC:9325 PPT1 palmitoyl-protein thioesterase 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "CLN1|INCL" ceroid-lipofuscinosis, neuronal 1, infantile PPT 2000-06-09 2008-07-31 2016-10-12 5538 ENSG00000131238 OTTHUMG00000004495 uc001cfb.3 U44772 NM_000310 "CCDS447|CCDS44119" P50897 "7637805|8325646" MGI:1298204 RGD:61994 "Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/|Mutations of the Palmitoyl-Protein Thioesterase Gene (PPT CLN1) Gene|http://www.retina-international.org/files/sci-news/pptmut.htm|LRG_690|http://www.lrg-sequence.org/LRG/LRG_690" PPT1 600722 117978 3.1.2.22 +HGNC:9326 PPT2 palmitoyl-protein thioesterase 2 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 1998-09-21 2016-10-05 9374 ENSG00000221988 OTTHUMG00000031257 uc063wvw.1 AF020543 NM_138717 "CCDS4740|CCDS4742" Q9UMR5 "9341199|10051407" MGI:1860075 RGD:620375 PPT2 603298 3.1.2.22 +HGNC:48343 PPT2-EGFL8 PPT2-EGFL8 readthrough (NMD candidate) other readthrough Approved 6p21.32 06p21.32 2013-05-09 2013-05-09 100532746 ENSG00000258388 OTTHUMG00000171245 NR_037861 +HGNC:30695 PPTC7 PTC7 protein phosphatase homolog protein-coding gene gene with protein product Approved 12q24.11 12q24.11 TA-PP2C T cell activation protein phosphatase 2C PTC7 protein phosphatase homolog (S. cerevisiae) 2006-02-27 2015-07-09 2016-07-07 160760 ENSG00000196850 OTTHUMG00000169529 uc001trh.2 AF385435 NM_139283 CCDS9149 Q8NI37 15177553 MGI:2444593 RGD:1310383 PPTC7 609668 3.1.3.16 +HGNC:28954 PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 protein-coding gene gene with protein product Approved 5q12.3 05q12.3 KIAA0073 "WD repeat domain containing|Cyclophilin peptidylprolyl isomerases" "362|909" 2005-05-26 2014-11-19 23398 ENSG00000113593 OTTHUMG00000131226 uc003jtv.6 AK025679 NM_015342 "CCDS3985|CCDS64161|CCDS64162" Q96BP3 7584044 MGI:2443069 RGD:1310204 PPWD1 +HGNC:9327 PPY pancreatic polypeptide protein-coding gene gene with protein product Approved 17q21.31 17q21.31 PNP "pancreatic polypeptide Y|prepro-PP (prepropancreatic polypeptide)" Endogenous ligands 542 1986-01-01 2013-02-28 5539 ENSG00000108849 OTTHUMG00000181800 uc002iep.4 NM_002722 CCDS11472 P01298 3753985 MGI:97753 RGD:3385 PPY 167780 +HGNC:9328 PPY2P pancreatic polypeptide 2, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 PPY2 pancreatic polypeptide 2 1999-10-19 2015-02-27 2015-02-27 2015-02-27 23614 ENSG00000265060 OTTHUMG00000179302 AF222903 NR_002181 Q9NRI7 10756099 606638 +HGNC:9330 PQBP1 polyglutamine binding protein 1 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "RENS1|MRXS8|SHS|MRX55|MRX2" "Sutherland-Haan X-linked mental retardation syndrome|mental retardation, X-linked 55|mental retardation, X-linked 2 (non-dysmorphic)" X-linked mental retardation 103 1999-01-12 2015-08-25 10084 ENSG00000102103 OTTHUMG00000024128 uc004dlg.4 AJ005893 NM_001032381.1 "CCDS14309|CCDS55412" O60828 "9875212|15024694|14634649" MGI:1859638 RGD:1549750 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PQBP1 PQBP1 300463 117983 +HGNC:9333 PQBP4 polyglutamine binding protein 4 other unknown Approved reserved reserved 1999-01-12 2013-04-02 23685 9875212 +HGNC:26188 PQLC1 PQ loop repeat containing 1 protein-coding gene gene with protein product Approved 18q23 18q23 FLJ22378 2004-01-14 2014-11-19 80148 ENSG00000122490 OTTHUMG00000132921 uc002lnl.3 AK123870 NM_025078 "CCDS12020|CCDS54192|CCDS54193" Q8N2U9 12477932 MGI:1914193 RGD:1305223 PQLC1 +HGNC:43986 PQLC1P1 PQ loop repeat containing 1 pseudogene 1 pseudogene pseudogene Approved 7q21.13 07q21.13 2012-05-23 2014-11-19 106479032 ENSG00000231763 OTTHUMG00000154430 NG_044359 PGOHUM00000232913 +HGNC:43987 PQLC1P2 PQ loop repeat containing 1 pseudogene 2 pseudogene pseudogene Approved 4q21.22 04q21.22 2012-05-23 2014-11-19 100127906 NG_011784 PGOHUM00000245983 +HGNC:26001 PQLC2 PQ loop repeat containing 2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 FLJ20320 2004-01-14 2014-11-19 54896 ENSG00000040487 OTTHUMG00000002521 uc001bby.4 BC015324 NM_017765 "CCDS195|CCDS30618" Q6ZP29 23169667 MGI:2384837 RGD:1311627 PQLC2 614760 +HGNC:25146 PQLC2L PQ loop repeat containing 2 like protein-coding gene gene with protein product Approved 3q25.32 03q25.32 C3orf55 chromosome 3 open reading frame 55 2006-02-01 2014-09-10 2016-06-29 2016-06-29 152078 ENSG00000174899 OTTHUMG00000158748 BC029129 NM_001130002 "CCDS46942|CCDS46943|CCDS46944|CCDS58859" A1A4F0 "12477932|22363504" +HGNC:28503 PQLC3 PQ loop repeat containing 3 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 MGC33602 C2orf22 chromosome 2 open reading frame 22 2004-02-05 2005-07-19 2005-07-19 2014-11-19 130814 ENSG00000162976 OTTHUMG00000119055 uc002rbc.5 BC027625 NM_152391 "CCDS1679|CCDS62856|CCDS62857" Q8N755 12477932 MGI:2444067 RGD:1306818 PQLC3 +HGNC:9335 PR@ proline rich protein gene cluster other region Approved 12p13.2 12p13.2 1992-04-29 2016-06-06 2016-06-06 5541 3922350 +HGNC:30591 PRAC1 prostate cancer susceptibility candidate 1 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 prostate, rectum and colon "C17orf92|PRAC" "chromosome 17 open reading frame 92|prostate cancer susceptibility candidate" 2008-01-17 2013-08-29 2013-08-29 2016-10-05 84366 ENSG00000159182 OTTHUMG00000159899 AF331165 NM_032391 CCDS11535 Q96KF2 11340635 609819 +HGNC:30143 PRAC2 prostate cancer susceptibility candidate 2 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 prostate, rectum and colon 2 "C17orf93|NCRNA00253|HOXB13-AS1|HOXB-AS5" "chromosome 17 open reading frame 93|non-protein coding RNA 253|HOXB13 antisense RNA 1 (non-protein coding)|HOXB cluster antisense RNA 5 (non-protein coding)|HOXB cluster antisense RNA 5" 2008-01-17 2013-08-29 2013-08-29 2016-10-05 360205 ENSG00000229637 OTTHUMG00000132085 "AF532777|BX106051" XM_006721865 "CCDS74099|CCDS74100" D3DTV9 12746837 610787 +HGNC:16047 PRADC1 protease associated domain containing 1 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 "MGC13004|PAP21|hPAP21" protease-associated domain-containing glycoprotein 21 kDa C2orf7 chromosome 2 open reading frame 7 2001-07-27 2011-04-15 2016-05-26 2016-05-26 84279 ENSG00000135617 OTTHUMG00000129773 uc002siy.3 BC005069 NM_032319 CCDS1924 Q9BSG0 15498570 MGI:1920577 RGD:1583112 PRADC1 +HGNC:44534 PRADC1P1 protease associated domain containing 1 pseudogene 1 pseudogene pseudogene Approved 3p22.2 03p22.2 2012-11-15 2016-05-26 2016-05-26 645571 ENSG00000236165 OTTHUMG00000155852 NG_022245 PGOHUM00000237993 +HGNC:28911 PRAF2 PRA1 domain family member 2 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "JM4|Yip6a" "PRA1 domain family 2|PRA1 domain family, member 2" YIP family 1144 2004-09-01 2015-11-18 2015-11-18 11230 ENSG00000243279 OTTHUMG00000034499 uc033ecu.2 BC021213 NM_007213 CCDS14317 O60831 16481131 MGI:1859607 RGD:1566287 PRAF2 300840 +HGNC:30091 PRAM1 PML-RARA regulated adaptor molecule 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 PML-RAR 2005-07-04 2016-04-25 84106 ENSG00000133246 OTTHUMG00000167924 uc002mkd.4 BC028012 NM_032152 CCDS45954 Q96QH2 "11301322|15572693" MGI:3576625 RGD:1564330 PRAM1 606466 +HGNC:9336 PRAME preferentially expressed antigen in melanoma protein-coding gene gene with protein product Approved 22q11.22 22q11.22 CT130 cancer/testis antigen 130 MAPE PRAME family 686 1996-06-21 2015-09-10 23532 ENSG00000185686 OTTHUMG00000151172 uc032qic.2 U65011 NM_206953 CCDS13801 P78395 "9047241|10591208" RGD:1596887 PRAME 606021 +HGNC:28840 PRAMEF1 PRAME family member 1 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2005-06-13 2015-09-10 65121 ENSG00000116721 OTTHUMG00000001928 uc031tpg.1 AL049686 NM_023013 CCDS148 O95521 PRAMEF1 +HGNC:28841 PRAMEF2 PRAME family member 2 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 FLJ43580 PRAME family 686 2005-06-13 2015-09-10 65122 ENSG00000120952 OTTHUMG00000001986 uc001aum.1 NM_023014 CCDS149 O60811 PRAMEF2 +HGNC:14087 PRAMEF3 entry withdrawn withdrawn withdrawn Entry Withdrawn PRAME family 686 2015-09-17 +HGNC:31971 PRAMEF4 PRAME family member 4 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 RP5-845O24.6 PRAME family 686 2005-06-13 2015-09-10 400735 ENSG00000243073 OTTHUMG00000001987 uc001aun.3 NM_001009611 CCDS30592 O60810 PRAMEF4 +HGNC:27995 PRAMEF5 PRAME family member 5 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAMEF5L PRAMEF23 PRAME family member 23 PRAME family 686 2005-06-13 2015-09-10 343068 ENSG00000270601 OTTHUMG00000184604 uc001auu.2 NM_001013407 CCDS72708 Q5TYX0 PRAMEF5 +HGNC:30583 PRAMEF6 PRAME family member 6 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2005-06-13 2015-09-10 440561 ENSG00000232423 OTTHUMG00000001984 uc031tpn.1 NM_001010889 CCDS30594 Q5VXH4 PRAMEF6 +HGNC:28415 PRAMEF7 PRAME family member 7 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2005-06-13 2015-09-10 441871 ENSG00000204510 OTTHUMG00000001982 uc057ckj.1 NM_001012277 CCDS30593 Q5VXH5 MGI:2140473 PRAMEF7 +HGNC:24074 PRAMEF8 PRAME family member 8 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2005-06-13 2015-09-10 391002 ENSG00000182330 OTTHUMG00000008037 uc031tpv.2 NM_001012276 CCDS72709 Q5VWM4 MGI:2140473 RGD:1564061 PRAMEF8 +HGNC:27996 PRAMEF9 PRAME family member 9 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2005-06-13 2015-09-17 343070 ENSG00000204505 OTTHUMG00000189239 uc057ckw.1 AK124292 NM_001010890 CCDS76108 Q5VWM5 PRAMEF9 +HGNC:27997 PRAMEF10 PRAME family member 10 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2005-06-13 2015-09-10 343071 ENSG00000187545 OTTHUMG00000001981 uc031tpi.2 AL049682 XM_496342 CCDS41255 O60809 PRAMEF10 +HGNC:14086 PRAMEF11 PRAME family member 11 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2005-06-13 2016-04-25 440560 ENSG00000239810 OTTHUMG00000001929 uc031tph.2 AL049680 XM_496341 CCDS53268 O60813 PRAMEF11 +HGNC:22125 PRAMEF12 PRAME family member 12 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 OTTHUMG00000001927 PRAME family 686 2006-07-04 2015-09-10 390999 ENSG00000116726 OTTHUMG00000001927 uc001aui.5 XM_372760 CCDS41254 O95522 MGI:1924882 RGD:1587431 PRAMEF12 +HGNC:13262 PRAMEF13 PRAME family member 13 other unknown Approved 1p36.21 01p36.21 OTTHUMG00000008034 PRAME family 686 2006-07-04 2015-08-06 400736 ENSG00000279169 OTTHUMG00000189240 NM_001291380 Q5VWM6 PRAMEF13 PGOHUM00000305958 +HGNC:13576 PRAMEF14 PRAME family member 14 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 OTTHUMG00000007916 PRAME family 686 2006-07-04 2015-09-10 729528 ENSG00000204481 OTTHUMG00000007916 uc010obi.2 NM_001099854 CCDS76109 Q5SWL7 PRAMEF14 +HGNC:26764 PRAMEF15 PRAME family member 15 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 OTTHUMG00000007921 PRAME family 686 2006-07-04 2015-09-10 653619 ENSG00000204501 OTTHUMG00000008035 uc001auw.2 NM_001098376 CCDS44059 Q5VWM5 PRAMEF15 +HGNC:25767 PRAMEF16 entry withdrawn withdrawn withdrawn Entry Withdrawn PRAME family 686 2015-09-17 +HGNC:29485 PRAMEF17 PRAME family member 17 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 OTTHUMG00000007909 PRAME family 686 2006-07-04 2015-09-10 391004 ENSG00000204479 OTTHUMG00000007909 uc009vnz.3 NM_001099851 CCDS41264 Q5VTA0 RGD:1587447 PRAMEF17 +HGNC:30693 PRAMEF18 PRAME family member 18 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2006-07-04 2016-07-19 391003 ENSG00000279804 uc061fwz.1 NM_001099850 CCDS41258 Q5VWM3 PRAMEF18 +HGNC:24908 PRAMEF19 PRAME family member 19 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 OTTHUMG00000007919 PRAME family 686 2006-07-04 2015-09-10 645414 ENSG00000204480 OTTHUMG00000007919 uc057clc.1 NM_001099790 Q5SWL8 PRAMEF19 +HGNC:25224 PRAMEF20 PRAME family member 20 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "OTTHUMG00000007911|OTTHUMT00000008157" PRAMEF21 PRAME family member 21 PRAME family 686 2006-07-04 2015-09-10 645425 ENSG00000204478 OTTHUMG00000007911 uc009vnv.1 NM_001099852 CCDS41265 Q5VT98 MGI:3712553 PRAMEF20 +HGNC:34393 PRAMEF22 PRAME family member 22 other unknown Approved 1p36.21 alternate reference locus 01p36.21 alternate reference locus PRAMEF3L PRAME family 686 2008-07-04 2016-05-19 653606 ENSG00000276816 OTTHUMG00000189609 NM_001100631 A3QJZ6 PRAMEF22 +HGNC:49179 PRAMEF25 PRAME family member 25 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2013-09-24 2015-09-17 441873 ENSG00000229571 OTTHUMG00000074741 NM_001310134 CCDS81265 A6NGN4 +HGNC:49178 PRAMEF26 PRAME family member 26 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2013-09-24 2013-09-24 2015-09-17 645359 ENSG00000280267 OTTHUMG00000009499 NM_001306072 CCDS76106 H0Y7S4 RGD:2323210 +HGNC:51234 PRAMEF27 PRAME family member 27 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 PRAME family 686 2015-09-17 2015-09-17 101929983 ENSG00000274764 OTTHUMG00000074727 NM_001300891 CCDS72704 A3QJZ7 RGD:1588644 +HGNC:51890 PRAMEF28P PRAME family member 28, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 PRAMEF28 PRAME family member 28 2015-09-17 2016-07-19 2016-07-19 2016-09-27 102724742 ENSG00000274178 OTTHUMG00000189309 PGOHUM00000305974 +HGNC:51891 PRAMEF29P PRAME family member 29, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2015-09-17 2015-09-17 729356 ENSG00000234064 OTTHUMG00000001983 NG_022769 PGOHUM00000296214 +HGNC:51892 PRAMEF30P PRAME family member 30, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2015-09-17 2015-09-17 441870 ENSG00000231103 OTTHUMG00000001930 NG_028823 PGOHUM00000295548 +HGNC:51893 PRAMEF31P PRAME family member 31, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2015-09-17 2015-09-17 100129611 ENSG00000250894 OTTHUMG00000001985 NG_028824 PGOHUM00000296220 +HGNC:51894 PRAMEF32P PRAME family member 32, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2015-09-17 2015-09-17 650236 ENSG00000231219 OTTHUMG00000008039 NG_022713 PGOHUM00000295559 +HGNC:49193 PRAMEF33P PRAME family member 33, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2015-09-17 2015-09-17 645382 ENSG00000237700 OTTHUMG00000008036 NM_001291381 +HGNC:51895 PRAMEF34P PRAME family member 34, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2015-09-17 2015-09-17 649324 ENSG00000277862 OTTHUMG00000074740 NR_111947 PGOHUM00000295551 +HGNC:51896 PRAMEF35P PRAME family member 35, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2015-09-17 2015-09-17 100419649 ENSG00000236179 OTTHUMG00000009502 NG_026911 PGOHUM00000295552 +HGNC:51897 PRAMEF36P PRAME family member 36, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2015-09-17 2015-09-17 645354 ENSG00000229978 OTTHUMG00000009501 NR_111945 PGOHUM00000296219 +HGNC:34302 PRAMENP PRAME N-terminal-like, pseudogene pseudogene pseudogene Approved 22q11.22 22q11.22 FLJ16327 "PRAMEL|PRAMEF24P" "preferentially expressed antigen in melanoma-like|PRAME family member 24, pseudogene" PRAME family 686 2008-06-11 2013-09-27 2013-09-27 2014-11-18 649179 ENSG00000197549 OTTHUMG00000150836 NR_135291 +HGNC:23304 PRAP1 proline rich acidic protein 1 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 UPA 2004-04-20 2016-06-06 2016-06-06 118471 ENSG00000165828 OTTHUMG00000019312 uc021qbf.2 AF421885 NM_145202 "CCDS7679|CCDS44498" Q96NZ9 "14583459|20674898" MGI:893573 RGD:61876 PRAP1 609776 +HGNC:9337 PRB1 proline rich protein BstNI subfamily 1 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "PM|PMF|PMS|PRB1M|PRB1L" Proline rich proteins 972 2001-06-22 2016-05-11 2016-05-11 5542 ENSG00000251655 OTTHUMG00000157263 uc001qzu.2 NM_005039 "CCDS8642|CCDS55805" P04280 8317492 RGD:628796 PRB1 180989 +HGNC:9338 PRB2 proline rich protein BstNI subfamily 2 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "PRPPRB1|Ps|cP7" Proline rich proteins 972 2001-06-22 2016-06-06 2016-06-06 653247 ENSG00000121335 OTTHUMG00000156975 uc010shk.2 K03208 NM_006248 CCDS41757 P02812 8554050 MGI:2681872 PRB2 168810 +HGNC:9339 PRB3 proline rich protein BstNI subfamily 3 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 PRG Proline rich proteins 972 2001-06-22 2016-06-06 2016-06-06 5544 ENSG00000197870 OTTHUMG00000169065 uc058lgt.1 NM_006249 Q04118 1894623 PRB3 168840 +HGNC:9340 PRB4 proline rich protein BstNI subfamily 4 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 Proline rich proteins 972 2001-06-22 2016-06-06 2016-06-06 5545 ENSG00000230657 OTTHUMG00000169116 uc001qzt.5 NM_002723 "CCDS8641|CCDS58208" P10163 PRB4 180990 +HGNC:9341 PRC1 protein regulator of cytokinesis 1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 ASE1 anaphase spindle elongation 1 homolog (S. cerevisiae) 1999-07-01 2006-07-07 2016-04-25 9055 ENSG00000198901 OTTHUMG00000171685 uc002bqn.5 AF044588 NM_003981 "CCDS32334|CCDS45352|CCDS45353" O43663 9885575 MGI:1858961 RGD:1311754 PRC1 603484 +HGNC:48587 PRC1-AS1 PRC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q26.1 15q26.1 2013-05-29 2013-05-29 100507118 ENSG00000258725 OTTHUMG00000171686 NR_051984 +HGNC:9343 PRCC papillary renal cell carcinoma (translocation-associated) protein-coding gene gene with protein product Approved 1q23.1 01q23.1 RCCP1 1996-09-03 2016-10-05 5546 ENSG00000143294 OTTHUMG00000041294 uc001fqa.4 X99720 NM_005973 CCDS1157 Q92733 8872474 MGI:2137738 RGD:1309037 PRCC 179755 117989 +HGNC:32528 PRCD progressive rod-cone degeneration protein-coding gene gene with protein product Approved 17q25.1 17q25.1 RP36 2006-09-21 2015-09-09 768206 ENSG00000214140 OTTHUMG00000132200 uc002jrx.3 DQ390338 XM_017025013 CCDS42382 Q00LT1 16938425 MGI:3649529 RGD:6488422 PRCD 610598 117992 +HGNC:9344 PRCP prolylcarboxypeptidase protein-coding gene gene with protein product Approved 11q14 11q14 "PCP|HUMPCP" angiotensinase C prolylcarboxypeptidase (angiotensinase C) "Minor histocompatibility antigens|Carboxypeptidases" "870|1321" 1997-11-06 2015-11-09 2015-11-09 5547 ENSG00000137509 OTTHUMG00000166899 uc001ozs.4 "BC001500|BI827978|L13977" NM_005040 "CCDS8262|CCDS41695" P42785 8344943 MGI:1919711 RGD:1307842 PRCP 176785 S28.001 objectId:1584 +HGNC:9345 PRD primary retinal dysplasia phenotype phenotype only Approved Xp11.3 Xp11.3 1994-07-20 2011-02-24 5548 8401512 312550 +HGNC:9346 PRDM1 PR/SET domain 1 protein-coding gene gene with protein product Approved 6q21 06q21 PRDI-BF1 BLIMP1 "PR domain containing 1, with ZNF domain|PR domain 1" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 1994-09-14 2016-07-18 2016-07-18 639 ENSG00000057657 OTTHUMG00000015299 uc003prd.3 XM_011536062 "CCDS5054|CCDS34505" O75626 1851123 MGI:99655 RGD:1311765 PRDM1 603423 +HGNC:9347 PRDM2 PR/SET domain 2 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 "RIZ|RIZ1|RIZ2|KMT8|MTB-ZF|HUMHOXY1" "retinoblastoma protein-binding zinc finger protein|retinoblastoma protein-interacting zinc finger protein|MTE-binding protein|zinc-finger DNA-binding protein|GATA-3 binding protein G3B" "PR domain containing 2, with ZNF domain|PR domain 2" "Lysine methyltransferases|PR/SET domain family" "487|1197" 1999-08-23 2016-07-18 2016-10-05 7799 ENSG00000116731 OTTHUMG00000007917 uc001avi.3 U17838 NM_012231 "CCDS150|CCDS151|CCDS30603|CCDS44061" Q13029 7538672 MGI:107628 RGD:1594531 PRDM2 601196 objectId:2699 +HGNC:9348 PRDM4 PR/SET domain 4 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 PFM1 "PR domain containing 4|PR domain 4" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 1999-08-23 2016-07-18 2016-07-18 11108 ENSG00000110851 OTTHUMG00000169914 uc001tmp.4 AF144757 NM_012406 CCDS9115 Q9UKN5 10552934 MGI:1920093 RGD:619929 PRDM4 605780 +HGNC:9349 PRDM5 PR/SET domain 5 protein-coding gene gene with protein product Approved 4q27 04q27 PFM2 "PR domain containing 5|PR domain 5" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 1999-08-23 2016-07-18 2016-07-18 11107 ENSG00000138738 OTTHUMG00000132970 uc003idn.4 AF272897 XM_011531562 "CCDS3716|CCDS75187|CCDS75188" Q9NQX1 MGI:1918029 RGD:1588700 PRDM5 614161 270336 2.1.1.- +HGNC:9350 PRDM6 PR/SET domain 6 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 PRISM "PR domain containing 6|PR domain 6" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 1999-08-23 2016-07-18 2016-07-18 93166 ENSG00000061455 OTTHUMG00000150469 uc003kti.4 AF272898 XM_049619 CCDS47259 Q9NQX0 MGI:2684938 RGD:1559594 PRDM6 616982 461326 2.1.1.43 +HGNC:9351 PRDM7 PR/SET domain 7 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 ZNF910 "PR domain containing 7|PR domain 7" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 1999-08-23 2016-07-18 2016-07-18 11105 ENSG00000126856 OTTHUMG00000138990 uc010cje.4 AF274347 XM_017022882 CCDS45557 Q9NQW5 "17916234|27129774" PRDM7 609759 987 2.1.1.43 +HGNC:13993 PRDM8 PR/SET domain 8 protein-coding gene gene with protein product Approved 4q21.21 04q21.21 "PR domain containing 8|PR domain 8" PR/SET domain family 1197 2000-11-28 2016-07-18 2016-07-18 56978 ENSG00000152784 OTTHUMG00000160885 uc010ijo.4 AF275815 XM_017008468 CCDS43243 Q9NQV8 MGI:1924880 RGD:1311628 PRDM8 616639 327299 +HGNC:13994 PRDM9 PR/SET domain 9 protein-coding gene gene with protein product Approved 5p14.2 05p14.2 "PFM6|ZNF899" PR-domain containing protein 9 MSBP3 "minisatellite binding protein 3, 115kDa|minisatellite binding protein 3 (115kD)|PR domain containing 9|PR domain 9" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 2000-11-28 2016-07-18 2016-07-18 56979 ENSG00000164256 OTTHUMG00000161918 uc003jgo.3 AF275816 NM_020227 CCDS43307 Q9NQV7 "10668202|2062643|24634223" MGI:2384854 RGD:1305247 PRDM9 609760 413 2.1.1.43 +HGNC:13995 PRDM10 PR/SET domain 10 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "KIAA1231|PFM7|MGC131802" "PRDM zinc finger transcription factor|PR-domain family member 7|tristanin" "PR domain containing 10|PR domain 10" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 2000-11-28 2016-07-18 2016-07-18 56980 ENSG00000170325 OTTHUMG00000165762 uc001qfn.4 AF275817 NM_199437 "CCDS8484|CCDS8485|CCDS44771|CCDS44772" Q9NQV6 12175877 MGI:2682952 RGD:1560384 PRDM10 +HGNC:13996 PRDM11 PR/SET domain 11 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 PFM8 PR-domain containing protein 11 "PR domain containing 11|PR domain 11" PR/SET domain family 1197 2000-11-28 2016-07-18 2016-10-05 56981 ENSG00000019485 OTTHUMG00000166478 uc031qaa.2 AF275818 NM_020229 "CCDS58130|CCDS73277" Q9NQV5 MGI:2685553 RGD:1597330 PRDM11 616347 +HGNC:13997 PRDM12 PR/SET domain 12 protein-coding gene gene with protein product Approved 9q34.12 09q34.12 "PR-domain containing protein 12|PR-domain zinc finger protein 12" "PR domain containing 12|PR domain 12" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 2000-11-28 2016-07-18 2016-07-18 59335 ENSG00000130711 OTTHUMG00000020808 uc004bzt.2 AY004252 NM_021619 CCDS6934 Q9H4Q4 14523459 MGI:2685844 RGD:1586401 PRDM12 616458 +HGNC:13998 PRDM13 PR/SET domain 13 protein-coding gene gene with protein product Approved 6q16.2 06q16.2 "PR domain containing 13|PR domain 13" PR/SET domain family 1197 2000-11-28 2016-07-18 2016-07-18 59336 ENSG00000112238 OTTHUMG00000015269 uc003pqg.2 AY004253 NM_021620 CCDS43487 Q9H4Q3 MGI:2448528 RGD:1589883 PRDM13 616741 +HGNC:14001 PRDM14 PR/SET domain 14 protein-coding gene gene with protein product Approved 8q13.3 08q13.3 "PR domain containing 14|PR domain 14" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 2000-11-28 2016-07-18 2016-07-18 63978 ENSG00000147596 OTTHUMG00000150495 uc003xym.3 AF319458 NM_024504 CCDS6206 Q9GZV8 MGI:3588194 RGD:2319590 PRDM14 611781 +HGNC:13999 PRDM15 PR/SET domain 15 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "ZNF298|C21orf83" "chromosome 21 open reading frame 83|PR domain containing 15|PR domain 15" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 2000-11-28 2016-07-18 2016-07-18 63977 ENSG00000141956 OTTHUMG00000086781 uc002yzq.1 AF276513 NM_022115 "CCDS13676|CCDS42932|CCDS63370" P57071 "12036297|12036298" MGI:1930121 RGD:1310055 PRDM15 +HGNC:14000 PRDM16 PR/SET domain 16 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "MEL1|PFM13|KIAA1675|MGC166915" "MDS1/EVI1-like|PR-domain zinc finger protein 16|transcription factor MEL1" "PR domain containing 16|PR domain 16" "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 2000-11-28 2016-07-18 2016-07-18 63976 ENSG00000142611 OTTHUMG00000000581 uc001akf.4 AF294278 NM_022114 "CCDS41236|CCDS44048" Q9HAZ2 11050005 MGI:1917923 RGD:2324431 PRDM16 605557 358598 +HGNC:9352 PRDX1 peroxiredoxin 1 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 NKEFA PAGA Peroxiredoxins 953 1993-11-01 2014-11-19 5052 ENSG00000117450 OTTHUMG00000007738 uc001cob.4 BC021683 NM_181697 CCDS522 Q06830 8496166 MGI:99523 RGD:620039 PRDX1 176763 +HGNC:11711 PRDX1P1 peroxiredoxin 1 pseudogene 1 pseudogene pseudogene Approved 9p23 09p23 thiol-specific antioxidant 2 "PAGB|TDPX2" "proliferation-associated gene B|thioredoxin-dependent peroxide reductase 2" 1993-11-01 2015-02-27 2015-02-27 2015-02-27 7002 ENSG00000214121 OTTHUMG00000019559 X72297 NG_001201 "8496166|8188254" +HGNC:9353 PRDX2 peroxiredoxin 2 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "PRP|NKEFB|TSA|PRXII|PRX2|MGC4104" "thioredoxin-dependent peroxide reductase 1|thiol-specific antioxidant 1|natural killer-enhancing factor B|thioredoxin peroxidase 1|torin" TDPX1 Peroxiredoxins 953 1995-07-06 2016-10-05 7001 ENSG00000167815 OTTHUMG00000134285 uc002mvd.5 NM_005809 CCDS12281 P32119 7607688 MGI:109486 RGD:3838 PRDX2 600538 +HGNC:30020 PRDX2P1 peroxiredoxin 2 pseudogene 1 pseudogene pseudogene Approved 13q12.3 13q12.3 2003-12-19 2016-10-05 359844 ENSG00000215049 OTTHUMG00000016666 NG_002915 7607688 PGOHUM00000248557 +HGNC:44967 PRDX2P2 peroxiredoxin 2 pseudogene 2 pseudogene pseudogene Approved 10p11.21 10p11.21 2012-12-20 2012-12-20 646218 ENSG00000213724 OTTHUMG00000017949 NG_022167 PGOHUM00000238721 +HGNC:44968 PRDX2P3 peroxiredoxin 2 pseudogene 3 pseudogene pseudogene Approved 5q35.3 05q35.3 2012-12-20 2012-12-20 100418943 ENSG00000249140 OTTHUMG00000163176 NG_024751 PGOHUM00000235866 +HGNC:44969 PRDX2P4 peroxiredoxin 2 pseudogene 4 pseudogene pseudogene Approved 6q16.3 06q16.3 2012-12-20 2016-10-05 442239 ENSG00000213177 OTTHUMG00000015274 NG_022363 PGOHUM00000260186 +HGNC:9354 PRDX3 peroxiredoxin 3 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 "MER5|AOP-1|SP-22" AOP1 antioxidant protein 1 Peroxiredoxins 953 1999-08-12 2016-10-05 10935 ENSG00000165672 OTTHUMG00000019146 uc001lec.5 D49396 NM_006793 CCDS7611 P30048 "7733872|9363753" MGI:88034 RGD:620040 PRDX3 604769 +HGNC:39264 PRDX3P1 peroxiredoxin 3 pseudogene 1 pseudogene pseudogene Approved 22q13.1 22q13.1 2010-11-24 2010-11-24 100419031 ENSG00000229598 OTTHUMG00000151027 NG_027433 PGOHUM00000246332 +HGNC:39265 PRDX3P2 peroxiredoxin 3 pseudogene 2 pseudogene pseudogene Approved 1p35.3 01p35.3 2010-11-24 2010-11-24 100128092 ENSG00000231468 OTTHUMG00000003652 NG_022715 PGOHUM00000243950 +HGNC:39266 PRDX3P3 peroxiredoxin 3 pseudogene 3 pseudogene pseudogene Approved 13q13.3 13q13.3 2010-11-24 2010-11-24 100128902 ENSG00000234701 OTTHUMG00000016757 NG_021959 PGOHUM00000248369 +HGNC:44643 PRDX3P4 peroxiredoxin 3 pseudogene 4 pseudogene pseudogene Approved 3p14.1 03p14.1 2012-11-23 2012-11-23 100418955 ENSG00000239926 OTTHUMG00000158794 NG_025701 PGOHUM00000238048 +HGNC:17169 PRDX4 peroxiredoxin 4 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 AOE37-2 Peroxiredoxins 953 2001-11-14 2015-09-07 10549 ENSG00000123131 OTTHUMG00000021253 uc004dam.4 U25182 NM_006406 CCDS14206 Q13162 9388242 MGI:1859815 RGD:620043 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PRDX4 PRDX4 300927 +HGNC:43598 PRDX4P1 peroxiredoxin 4 pseudogene 1 pseudogene pseudogene Approved 4p12 04p12 2011-11-23 2014-02-12 100418949 ENSG00000248987 OTTHUMG00000162177 NG_025098 PGOHUM00000245509 +HGNC:43599 PRDX4P2 peroxiredoxin 4 pseudogene 2 pseudogene pseudogene Approved 5p13.2 05p13.2 2011-11-23 2011-11-23 100418942 NG_024668 PGOHUM00000260055 +HGNC:9355 PRDX5 peroxiredoxin 5 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "ACR1|AOEB166|MGC142285|PRXV|PMP20|B166|PRDX6|PLP|SBBI10|MGC117264|MGC142283" "antioxidant enzyme B166|thioredoxin peroxidase PMP20|peroxisomal antioxidant enzyme|TPx type VI|liver tissue 2D-page spot 71B|Alu co-repressor 1" Peroxiredoxins 953 2000-07-31 2016-10-05 25824 ENSG00000126432 OTTHUMG00000168805 uc001nzu.4 AF197952 NM_181651 "CCDS8069|CCDS8070|CCDS8071" P30044 "10514471|10521424" MGI:1859821 RGD:71007 PRDX5 606583 +HGNC:16753 PRDX6 peroxiredoxin 6 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "AOP2|KIAA0106|1-Cys|NSGPx|PRX|aiPLA2|MGC46173|p29" Peroxiredoxins 953 2003-04-03 2016-10-05 9588 ENSG00000117592 OTTHUMG00000034804 uc001giy.2 D14662 NM_004905 CCDS1307 P30041 11233154 MGI:894320 RGD:71005 PRDX6 602316 +HGNC:9356 PREB prolactin regulatory element binding protein-coding gene gene with protein product Approved 2p23.3 02p23.3 SEC12 WD repeat domain containing 362 1999-05-17 2016-10-05 10113 ENSG00000138073 OTTHUMG00000097076 uc002rix.3 NM_013388 "CCDS1738|CCDS82431" Q9HCU5 "10194769|12735795" MGI:1355326 RGD:61929 PREB 606395 +HGNC:30255 PRELID1 PRELI domain containing 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "CGI-106|PX19|PRELI" "protein of relevant evolutionary and lymphoid interest|px19-like protein" PRELI domain containing 1295 2007-02-20 2014-11-19 27166 ENSG00000169230 OTTHUMG00000130847 uc003mfx.5 BC013748 NM_013237 "CCDS4415|CCDS64328" Q9Y255 "10784606|14640972" MGI:1913744 RGD:1308082 PRELID1 605733 +HGNC:43886 PRELID1P1 PRELI domain containing 1 pseudogene 1 pseudogene pseudogene Approved 6q22.32 06q22.32 2012-04-23 2012-04-23 728666 ENSG00000217325 OTTHUMG00000015520 NG_022903 PGOHUM00000243766 +HGNC:43887 PRELID1P2 PRELI domain containing 1 pseudogene 2 pseudogene pseudogene Approved 6p22.2 06p22.2 2012-04-23 2014-11-19 100419971 ENSG00000217408 OTTHUMG00000014392 NG_025789 PGOHUM00000243079 +HGNC:43888 PRELID1P3 PRELI domain containing 1 pseudogene 3 pseudogene pseudogene Approved 10q21.3 10q21.3 2012-04-23 2014-11-19 100420046 ENSG00000235816 OTTHUMG00000018316 NG_025509 PGOHUM00000238812 +HGNC:43889 PRELID1P4 PRELI domain containing 1 pseudogene 4 pseudogene pseudogene Approved 15q14 15q14 2012-04-23 2014-11-18 390572 ENSG00000259592 OTTHUMG00000172306 NG_022107 PGOHUM00000246746 +HGNC:28306 PRELID2 PRELI domain containing 2 protein-coding gene gene with protein product Approved 5q32 05q32 "MGC21644|FLJ38376" PRELI domain containing 1295 2007-02-20 2014-11-19 153768 ENSG00000186314 OTTHUMG00000163384 uc063ihc.1 AK095695 NM_182960 "CCDS34261|CCDS34262|CCDS43377" Q8N945 12477932 MGI:1924869 RGD:1584707 PRELID2 +HGNC:43892 PRELID2P1 PRELI domain containing 2 pseudogene 1 pseudogene pseudogene Approved 12q15 12q15 2012-04-23 2012-04-23 102606462 ENSG00000257336 OTTHUMG00000169302 NG_033861 PGOHUM00000239514 +HGNC:24639 PRELID3A PRELI domain containing 3A protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "HFL-EDDG1|FLJ31484" erythroid differentiation and denucleation factor 1 "C18orf43|SLMO1" "chromosome 18 open reading frame 43|slowmo homolog 1 (Drosophila)" PRELI domain containing 1295 2004-06-18 2015-08-14 2015-08-14 2015-08-14 10650 ENSG00000141391 OTTHUMG00000131694 AK056046 NM_006553 "CCDS11860|CCDS77154" Q96N28 MGI:2442865 RGD:1582858 616545 +HGNC:15892 PRELID3B PRELI domain containing 3B protein-coding gene gene with protein product Approved 20q13.32 20q13.32 dJ543J19.5 "C20orf45|SLMO2" "chromosome 20 open reading frame 45|slowmo homolog 2 (Drosophila)" PRELI domain containing 1295 2001-06-21 2015-08-14 2015-08-14 2015-08-14 51012 ENSG00000101166 OTTHUMG00000032856 AF151865 NM_016045 "CCDS42893|CCDS58783" Q9Y3B1 MGI:1913640 RGD:1594395 +HGNC:49063 PRELID3BP1 PRELI domain containing 3B pseudogene 1 pseudogene pseudogene Approved 1q41 01q41 SLMO2P1 "slowmo homolog 2 (Drosophila) pseudogene 1|SLMO2 pseudogene 1" 2013-08-20 2015-08-14 2015-08-14 2015-08-14 100129664 ENSG00000226226 OTTHUMG00000037349 NG_030211 PGOHUM00000296776 +HGNC:49064 PRELID3BP2 PRELI domain containing 3B pseudogene 2 pseudogene pseudogene Approved 13q14.3 13q14.3 SLMO2P2 "slowmo homolog 2 (Drosophila) pseudogene 2|SLMO2 pseudogene 2" 2013-08-20 2015-08-14 2015-08-14 2015-08-14 106481667 ENSG00000271242 OTTHUMG00000184860 NG_042929 PGOHUM00000292156 +HGNC:49065 PRELID3BP3 PRELI domain containing 3B pseudogene 3 pseudogene pseudogene Approved 17q23.2 17q23.2 SLMO2P3 "slowmo homolog 2 (Drosophila) pseudogene 3|SLMO2 pseudogene 3" 2013-08-20 2015-08-14 2015-08-14 2015-08-14 100128712 ENSG00000264907 OTTHUMG00000179194 NG_022473 PGOHUM00000294511 +HGNC:49066 PRELID3BP4 PRELI domain containing 3B pseudogene 4 pseudogene pseudogene Approved 5p12 05p12 2015-08-14 2015-08-14 100420275 ENSG00000251163 OTTHUMG00000162136 NG_024592 PGOHUM00000300570 +HGNC:49067 PRELID3BP5 PRELI domain containing 3B pseudogene 5 pseudogene pseudogene Approved 5p12 05p12 2015-08-14 2015-08-14 106480242 ENSG00000251656 OTTHUMG00000162138 NG_043827 PGOHUM00000300571 +HGNC:49068 PRELID3BP6 PRELI domain containing 3B pseudogene 6 pseudogene pseudogene Approved 5p12 05p12 2015-08-14 2015-08-14 100132940 ENSG00000249516 OTTHUMG00000162134 NG_030077 PGOHUM00000300936 +HGNC:49069 PRELID3BP7 PRELI domain containing 3B pseudogene 7 pseudogene pseudogene Approved 5p12 05p12 2015-08-14 2015-08-14 730974 ENSG00000250711 OTTHUMG00000162135 NG_030078 PGOHUM00000300937 +HGNC:49070 PRELID3BP8 PRELI domain containing 3B pseudogene 8 pseudogene pseudogene Approved 5q23.1 05q23.1 2015-08-14 2015-08-14 106480243 ENSG00000270741 OTTHUMG00000184307 NG_043834 PGOHUM00000300731 +HGNC:49071 PRELID3BP9 PRELI domain containing 3B pseudogene 9 pseudogene pseudogene Approved 5q32 05q32 2015-08-14 2015-08-14 100420277 NG_024732 PGOHUM00000301158 +HGNC:49072 PRELID3BP10 PRELI domain containing 3B pseudogene 10 pseudogene pseudogene Approved 7q31.33 07q31.33 2015-08-14 2015-08-14 646873 ENSG00000236105 OTTHUMG00000034030 NG_022572 PGOHUM00000302922 +HGNC:49073 PRELID3BP11 PRELI domain containing 3B pseudogene 11 pseudogene pseudogene Approved 9p24.1 09p24.1 SLMO2P11 SLMO2 pseudogene 11 2014-02-13 2015-08-14 2015-08-14 2015-08-14 102723314 ENSG00000231108 OTTHUMG00000019535 PGOHUM00000303725 +HGNC:9357 PRELP proline and arginine rich end leucine rich repeat protein protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "SLRR2A|prolargin" prolargin proteoglycan proline arginine-rich end leucine-rich repeat protein Small leucine rich repeat proteoglycans 573 1996-09-24 2016-06-06 2016-10-05 5549 ENSG00000188783 OTTHUMG00000035911 uc001gzs.4 BC032498 NM_002725 CCDS1438 P51888 7592739 MGI:2151110 RGD:620226 PRELP 601914 +HGNC:9358 PREP prolyl endopeptidase protein-coding gene gene with protein product Approved 6q21 06q21 prolyl oligopeptidase 1996-03-12 2016-10-05 5550 ENSG00000085377 OTTHUMG00000015297 uc003prc.4 XM_011535925 CCDS5053 P48147 7959018 MGI:1270863 RGD:620841 PREP 600400 S09.001 objectId:2395 3.4.21.26 +HGNC:30228 PREPL prolyl endopeptidase-like protein-coding gene gene with protein product Approved 2p21 02p21 KIAA0436 2005-02-25 2016-10-05 9581 ENSG00000138078 OTTHUMG00000152791 uc010fax.4 AB007896 NM_006036 "CCDS33190|CCDS42675|CCDS42676|CCDS54353" Q4J6C6 11524703 MGI:2441932 RGD:1310143 PREPL 609557 165929 S09.015 objectId:2870 +HGNC:32594 PREX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "KIAA1415|P-REX1" PIP3 dependent Rac exchange factor 1 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|PDZ domain containing" "682|722|1220" 2008-09-15 2016-04-06 2016-04-06 57580 ENSG00000124126 OTTHUMG00000032685 uc002xtw.2 AB037836 NM_020820 CCDS13410 Q8TCU6 "11955434|15545267|16301320" MGI:3040696 RGD:1306534 PREX1 606905 +HGNC:22950 PREX2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding gene gene with protein product Approved 8q13.2 08q13.2 "DEP.2|FLJ12987|P-REX2|PPP1R129" protein phosphatase 1, regulatory subunit 129 DEPDC2 "DEP domain containing 2|phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2" "Protein phosphatase 1 regulatory subunits|Rho guanine nucleotide exchange factors|PDZ domain containing" "694|722|1220" 2004-02-23 2008-09-15 2016-04-06 2016-10-05 80243 ENSG00000046889 OTTHUMG00000164402 uc003xxv.2 AK024079 NM_025170 CCDS6201 Q70Z35 "15304342|15304343" MGI:1923385 RGD:1307865 PREX2 612139 +HGNC:9360 PRF1 perforin 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "PFP|P1|HPLH2" "Perforin|perforin 1 (preforming protein)" perforin 1 (pore forming protein) C2 domain containing 823 1989-02-23 2016-02-01 2016-10-12 5551 ENSG00000180644 OTTHUMG00000018412 uc009xqg.4 BC047695 NM_005041 CCDS7305 P14222 "1505959|2592021" MGI:97551 RGD:708463 "PRF1base: Mutation registry for Familiar haemophagocytic lymphohistiocytosis, type II (FHL2)|http://structure.bmc.lu.se/idbase/PRF1base/|LRG_94|http://www.lrg-sequence.org/LRG/LRG_94" PRF1 170280 117995 +HGNC:9362 PRG2 proteoglycan 2, pro eosinophil major basic protein protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "MBP|BMPG|proMBP" eosinophil major basic protein proteoglycan 2, bone marrow (natural killer cell activator, eosinophil granule major basic protein) C-type lectin domain containing 1298 1993-09-29 2016-06-17 2016-06-17 5553 ENSG00000186652 OTTHUMG00000167027 uc001nkc.4 BC005929 NM_002728 "CCDS7955|CCDS58133" P13727 1565101 MGI:103294 RGD:69336 PRG2 605601 I63.001 +HGNC:9363 PRG3 proteoglycan 3, pro eosinophil major basic protein 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "MBPH|MBP2" proteoglycan 3 C-type lectin domain containing 1298 2000-05-02 2016-06-17 2016-06-17 10394 ENSG00000156575 OTTHUMG00000167026 uc001njv.2 AF132209 NM_006093 CCDS7954 Q9Y2Y8 "10318872|11170744" MGI:1858200 RGD:1309904 PRG3 606814 I63.001 +HGNC:9364 PRG4 proteoglycan 4 protein-coding gene gene with protein product Approved 1q31.1 01q31.1 "JCAP|SZP|MSF|HAPO|bG174L6.2|FLJ32635" "lubricin|megakaryocyte stimulating factor|articular superficial zone protein|Jacobs camptodactyly-arthropathy-pericarditis syndrome|camptodactyly, arthropathy, coxa vara, pericarditis syndrome|bG174L6.2 (MSF: megakaryocyte stimulating factor )" CACP proteoglycan 4, (megakaryocyte stimulating factor, articular superficial zone protein, camptodactyly, arthropathy, coxa vara, pericarditis syndrome) 2000-07-31 2004-11-15 2016-10-05 10216 ENSG00000116690 OTTHUMG00000035574 uc001gru.5 U70136 NM_005807 "CCDS1369|CCDS44287|CCDS44288|CCDS81411" Q92954 "10545950|9920774" MGI:1891344 RGD:1308976 PRG4 604283 118000 +HGNC:9366 PRH1 proline rich protein HaeIII subfamily 1 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 Pa Proline rich proteins 972 2001-06-22 2016-06-06 2016-06-06 5554 ENSG00000231887 OTTHUMG00000186774 uc058lgd.1 NM_006250 CCDS76533 P02810 3009472 RGD:619775 PRH1 168730 +HGNC:9367 PRH2 proline rich protein HaeIII subfamily 2 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 Pr "parotid proline-rich protein|acidic salivary proline-rich protein, HaeIII type, 2" Proline rich proteins 972 2001-06-22 2016-06-06 2016-06-06 5555 ENSG00000134551 OTTHUMG00000168556 uc009zhr.4 NM_001110213 CCDS8636 P02810 3009472 RGD:735181 PRH2 168790 +HGNC:17019 PRICKLE1 prickle planar cell polarity protein 1 protein-coding gene gene with protein product Approved 12q12 12q12 "FLJ31937|EPM1B|RILP" REST/NRSF interacting LIM domain protein "prickle-like 1 (Drosophila)|prickle homolog 1 (Drosophila)" "Prickle planar cell polarity proteins|LIM domain containing" "1184|1218" 2003-02-10 2016-01-15 2016-01-15 144165 ENSG00000139174 OTTHUMG00000169443 uc001rnm.4 AK056499 XM_017018838 CCDS8742 Q96MT3 "12525887|18976727" MGI:1916034 RGD:735090 PRICKLE1 608500 169957 +HGNC:20340 PRICKLE2 prickle planar cell polarity protein 2 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 DKFZp686D143 "prickle-like 2 (Drosophila)|prickle homolog 2 (Drosophila)" "Prickle planar cell polarity proteins|LIM domain containing" "1184|1218" 2003-02-10 2016-01-15 2016-10-05 166336 ENSG00000163637 OTTHUMG00000158789 uc003dmf.4 AK127839 NM_198859 CCDS2902 Q7Z3G6 12525887 MGI:1925144 RGD:1306723 PRICKLE2 608501 403958 +HGNC:40916 PRICKLE2-AS1 PRICKLE2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 PRICKLE2 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100652759 ENSG00000241572 OTTHUMG00000158793 uc031sak.1 NR_045697 +HGNC:40917 PRICKLE2-AS2 PRICKLE2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 PRICKLE2 antisense RNA 2 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874242 ENSG00000241101 OTTHUMG00000158792 uc031sal.2 NR_046701 +HGNC:40918 PRICKLE2-AS3 PRICKLE2 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 PRICKLE2 antisense RNA 3 (non-protein coding) 2011-07-28 2012-08-15 2014-11-18 100874243 ENSG00000226017 OTTHUMG00000158795 uc031sam.2 NR_046702 +HGNC:6645 PRICKLE3 prickle planar cell polarity protein 3 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 LMO6 "LIM domain only 6|prickle homolog 3 (Drosophila)" "Prickle planar cell polarity proteins|LIM domain containing" "1184|1218" 1997-04-21 2007-09-18 2016-01-15 2016-01-15 4007 ENSG00000012211 OTTHUMG00000024134 uc004dmy.2 BC016856 NM_006150 "CCDS14320|CCDS78481" O43900 9344658 MGI:1859635 RGD:1359685 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PRICKLE3 PRICKLE3 300111 +HGNC:16805 PRICKLE4 prickle planar cell polarity protein 4 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "OEBT|DKFZp761H221" overexpressed breast tumour protein C6orf49 "chromosome 6 open reading frame 49|prickle homolog 4 (Drosophila)" "Prickle planar cell polarity proteins|LIM domain containing" "1184|1218" 2002-12-19 2007-09-18 2016-01-15 2016-01-15 29964 ENSG00000278224 OTTHUMG00000188149 uc011duf.2 AF216754 NM_013397 CCDS34449 Q2TBC4 15702247 MGI:2685785 RGD:1563979 PRICKLE4 611389 +HGNC:9369 PRIM1 primase (DNA) subunit 1 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 primase, DNA, polypeptide 1 (49kDa) 1990-07-26 2016-03-11 2016-03-11 5557 ENSG00000198056 OTTHUMG00000170034 uc001smd.4 BC005266 NM_000946 CCDS44926 P49642 8530050 MGI:97757 RGD:621380 PRIM1 176635 +HGNC:9370 PRIM2 primase (DNA) subunit 2 protein-coding gene gene with protein product Approved 6p11.2 06p11.2 PRIM2A "primase, polypeptide 2A (58kD)|primase, polypeptide 2A, 58kDa|primase, DNA, polypeptide 2 (58kDa)" 1990-07-26 2007-06-19 2016-03-11 2016-10-05 5558 ENSG00000146143 OTTHUMG00000016190 uc032wzb.2 NM_000947 "CCDS75476|CCDS75477" P49643 "8530050|20675616" MGI:97758 RGD:631433 PRIM2 176636 +HGNC:9371 PRIM2B entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:18319 PRIMA1 proline rich membrane anchor 1 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 PRIMA membrane anchor of acetylcholinesterase 2002-04-26 2016-10-05 145270 ENSG00000175785 OTTHUMG00000141313 uc001ybw.2 NM_178013 CCDS9912 Q86XR5 11804574 MGI:1926097 RGD:1583978 PRIMA1 613851 +HGNC:26575 PRIMPOL primase and DNA directed polymerase protein-coding gene gene with protein product Approved 4q35.1 04q35.1 FLJ33167 CCDC111 "coiled-coil domain containing 111|primase and polymerase (DNA-directed)" 2006-05-22 2013-09-27 2015-11-06 2015-11-06 201973 ENSG00000164306 OTTHUMG00000160495 AK057729 NM_152683 "CCDS3837|CCDS75211|CCDS75212" Q96LW4 12477932 MGI:3603756 RGD:1562119 615421 +HGNC:34235 PRINS psoriasis associated non-protein coding RNA induced by stress non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 NCRNA00074 non-protein coding RNA 74 psoriasis associated RNA induced by stress (non-protein coding) Long non-coding RNAs 788 2008-06-05 2012-08-16 2014-10-22 100169750 uc057sha.1 AK022045 NR_023388 "15855153|20377629|21750967" PRINS +HGNC:9376 PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 AMPKa1 AMPK, alpha, 1 protein kinase, AMP-activated, alpha 1 catalytic subunit 1997-05-09 2016-01-27 2016-01-27 5562 ENSG00000132356 OTTHUMG00000162269 uc003jmc.4 NM_006251 "CCDS3932|CCDS3933" Q13131 8557660 MGI:2145955 RGD:3387 PRKAA1 602739 objectId:1541 +HGNC:9377 PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 protein-coding gene gene with protein product Approved 1p32.2 01p32.2 "AMPK|AMPKa2" PRKAA protein kinase, AMP-activated, alpha 2 catalytic subunit 1995-12-12 2016-01-27 2016-10-05 5563 ENSG00000162409 OTTHUMG00000008282 uc001cyk.5 BC069823 NM_006252 CCDS605 P54646 7959015 MGI:1336173 RGD:620893 PRKAA2 600497 objectId:1542 +HGNC:9378 PRKAB1 protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 AMPK beta 1 protein kinase, AMP-activated, beta 1 non-catalytic subunit 1997-05-09 2016-01-27 2016-10-05 5564 ENSG00000111725 OTTHUMG00000168954 uc001txg.4 BC001823 NM_006253 CCDS9191 Q9Y478 8557660 MGI:1336167 RGD:71057 PRKAB1 602740 objectId:1543 +HGNC:9379 PRKAB2 protein kinase AMP-activated non-catalytic subunit beta 2 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 AMPK beta 2 protein kinase, AMP-activated, beta 2 non-catalytic subunit 1997-05-09 2016-01-27 2016-10-05 5565 ENSG00000131791 OTTHUMG00000014032 uc001epe.5 BC053610 NM_005399 CCDS925 O43741 8557660 MGI:1336185 RGD:620905 PRKAB2 602741 objectId:1544 +HGNC:9380 PRKACA protein kinase cAMP-activated catalytic subunit alpha protein-coding gene gene with protein product Approved 19p13.1 19p13.1 PKACa "protein kinase, cAMP-dependent, catalytic, alpha|protein kinase, cAMP-dependent, alpha catalytic subunit" 2001-06-22 2016-01-27 2016-01-27 5566 ENSG00000072062 OTTHUMG00000182051 uc002myc.4 NM_002730 "CCDS12304|CCDS12305" P17612 8884279 MGI:97592 RGD:3389 PRKACA 601639 404135 objectId:1476 2.7.11.1 +HGNC:9381 PRKACB protein kinase cAMP-activated catalytic subunit beta protein-coding gene gene with protein product Approved 1p31.1 01p31.1 PKACb "protein kinase, cAMP-dependent, catalytic, beta|protein kinase, cAMP-dependent, beta catalytic subunit" 2001-06-22 2016-01-27 2016-10-05 5567 ENSG00000142875 OTTHUMG00000009975 uc001djl.4 BC035058 NM_182948 "CCDS691|CCDS692|CCDS693|CCDS55610|CCDS55611|CCDS72812|CCDS72813|CCDS72814|CCDS72815|CCDS72816|CCDS55609" P22694 MGI:97594 RGD:1310574 PRKACB 176892 objectId:1477 2.7.11.1 +HGNC:9382 PRKACG protein kinase cAMP-activated catalytic subunit gamma protein-coding gene gene with protein product Approved 9q21.11 09q21.11 PKACg "protein kinase, cAMP-dependent, catalytic, gamma|protein kinase, cAMP-dependent, gamma catalytic subunit" 2001-06-22 2016-01-27 2016-10-05 5568 ENSG00000165059 OTTHUMG00000019974 uc004agy.4 M34182 NM_002732 CCDS6625 P22612 "2342480|9598317" PRKACG 176893 446842 objectId:1478 2.7.11.1 +HGNC:9385 PRKAG1 protein kinase AMP-activated non-catalytic subunit gamma 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 protein kinase, AMP-activated, gamma 1 non-catalytic subunit 1997-05-09 2016-01-27 2016-01-27 5571 ENSG00000181929 OTTHUMG00000170406 uc001rsy.4 U42412 NM_002733 "CCDS8777|CCDS55824|CCDS55825" P54619 "8557660|8621499" MGI:108411 RGD:3388 PRKAG1 602742 objectId:1545 +HGNC:9386 PRKAG2 protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "AAKG|AAKG2|H91620p|WPWS|CMH6" AMPK gamma2 protein kinase, AMP-activated, gamma 2 non-catalytic subunit 1997-05-09 2016-01-27 2016-10-12 51422 ENSG00000106617 OTTHUMG00000157324 uc003wkk.4 AF087875 NM_016203 "CCDS5928|CCDS43683|CCDS47752" Q9UGJ0 "8557660|8621499" MGI:1336153 RGD:727782 LRG_430|http://www.lrg-sequence.org/LRG/LRG_430 PRKAG2 602743 118006 objectId:1546 +HGNC:40468 PRKAG2-AS1 PRKAG2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q36.1 07q36.1 PRKAG2 antisense RNA 1 (non-protein coding) 2012-07-03 2012-08-15 2014-11-19 100505483 ENSG00000239911 OTTHUMG00000157323 uc003wko.3 BC131560 NR_038926 +HGNC:9387 PRKAG3 protein kinase AMP-activated non-catalytic subunit gamma 3 protein-coding gene gene with protein product Approved 2q35 02q35 protein kinase, AMP-activated, gamma 3 non-catalytic subunit 2000-07-31 2016-01-27 2016-01-27 53632 ENSG00000115592 OTTHUMG00000133078 uc002vjb.2 AF214519 XM_017004343 CCDS2424 Q9UGI9 10818001 MGI:1891343 RGD:1308698 PRKAG3 604976 objectId:1547 +HGNC:9388 PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding gene gene with protein product Approved 17q24.2 17q24.2 CNC1 Carney complex type 1 "PRKAR1|TSE1" "tissue specific extinguisher 1|protein kinase, cAMP-dependent, regulatory, type I, alpha|protein kinase, cAMP-dependent, regulatory subunit type I alpha" 1988-05-11 2016-01-27 2016-10-12 5573 ENSG00000108946 OTTHUMG00000180128 uc002jhh.5 XM_011524983 "CCDS11678|CCDS62307" P10644 "3479018|10973256" MGI:104878 RGD:3391 LRG_514|http://www.lrg-sequence.org/LRG/LRG_514 PRKAR1A 188830 118010 objectId:1472 2.7.11.1 +HGNC:9389 PRKAR1AP1 protein kinase cAMP-dependent type I regulatory subunit alpha pseudogene 1 pseudogene pseudogene Approved 1p22.1 01p22.1 PRKAR1AP "protein kinase, cAMP-dependent, regulatory, type I, alpha pseudogene|protein kinase, cAMP-dependent, regulatory subunit type I alpha pseudogene" 1993-04-30 2016-01-27 2016-01-27 2016-01-27 5574 ENSG00000233401 OTTHUMG00000010291 L20252 NG_003073 8468054 PGOHUM00000244795 +HGNC:9390 PRKAR1B protein kinase cAMP-dependent type I regulatory subunit beta protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "protein kinase, cAMP-dependent, regulatory, type I, beta|protein kinase, cAMP-dependent, regulatory subunit type I beta" 1991-07-17 2016-01-27 2016-01-27 5575 ENSG00000188191 OTTHUMG00000151411 uc021zyj.1 M65066 XM_011515446 CCDS34579 P31321 "1358799|3479018" MGI:97759 RGD:3392 PRKAR1B 176911 423011 objectId:1473 2.7.11.1 +HGNC:9391 PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding gene gene with protein product Approved 3p21.31 03p21.31 PRKAR2 "protein kinase, cAMP-dependent, regulatory, type II, alpha|protein kinase, cAMP-dependent, regulatory subunit type II alpha" 1988-07-18 2016-01-27 2016-10-05 5576 ENSG00000114302 OTTHUMG00000133540 uc003cux.2 NM_004157 "CCDS2778|CCDS82771" P13861 9676433 MGI:108025 RGD:3393 PRKAR2A 176910 objectId:1474 2.7.11.1 +HGNC:40471 PRKAR2A-AS1 PRKAR2A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 PRKAR2A antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100506637 ENSG00000224424 OTTHUMG00000156671 uc062jlz.1 NR_109997 +HGNC:9392 PRKAR2B protein kinase cAMP-dependent type II regulatory subunit beta protein-coding gene gene with protein product Approved 7q22.3 07q22.3 PRKAR2 "protein kinase, cAMP-dependent, regulatory, type II, beta|protein kinase, cAMP-dependent, regulatory subunit type II beta" 1991-07-17 2016-01-27 2016-01-27 5577 ENSG00000005249 OTTHUMG00000137418 uc003vdx.4 NM_002736 CCDS5740 P31323 1358799 MGI:97760 RGD:3394 PRKAR2B 176912 objectId:1475 2.7.11.1 +HGNC:9393 PRKCA protein kinase C alpha protein-coding gene gene with protein product Approved 17q24.2 17q24.2 PKCA protein kinase C, alpha C2 domain containing protein kinases 835 1991-08-02 2016-01-27 2016-01-27 5578 ENSG00000154229 OTTHUMG00000179533 uc002jfp.2 XM_017024836 CCDS11664 P17252 MGI:97595 RGD:3395 PRKCA 176960 objectId:1482 2.7.11.1 +HGNC:51347 PRKCA-AS1 PRKCA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q24.2 17q24.2 2014-10-10 2014-10-10 101928001 ENSG00000264630 OTTHUMG00000179537 BC033554 NR_110822 +HGNC:9395 PRKCB protein kinase C beta protein-coding gene gene with protein product Approved 16p12.2-p12.1 16p12.2-p12.1 "PRKCB2|PKCB|PRKCB1" "protein kinase C, beta 1|protein kinase C, beta" C2 domain containing protein kinases 835 1991-08-02 2008-08-18 2016-01-27 2016-10-11 5579 ENSG00000166501 OTTHUMG00000131615 uc002dmd.4 M13975 NM_212535 "CCDS10618|CCDS10619" P05771 3658678 MGI:97596 RGD:3396 PRKCB 176970 objectId:1483 2.7.11.1 +HGNC:9399 PRKCD protein kinase C delta protein-coding gene gene with protein product Approved 3p21.1 03p21.1 protein kinase C, delta C2 domain containing protein kinases 835 1991-08-06 2016-01-27 2016-10-05 5580 ENSG00000163932 OTTHUMG00000133659 uc003dgm.4 XM_017006855 CCDS2870 Q05655 8188219 MGI:97598 RGD:67383 PRKCD 176977 332077 objectId:1485 2.7.11.1 +HGNC:9400 PRKCDBP protein kinase C delta binding protein protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "SRBC|HSRBC|MGC20400|cavin-3|CAVIN3" sdr-related gene product that binds to c-kinase protein kinase C, delta binding protein Cavins 1326 1999-01-15 2016-01-27 2016-01-27 112464 ENSG00000170955 OTTHUMG00000133378 uc001mcu.2 AF339881 NM_145040 CCDS7762 Q969G5 9054438 MGI:1923422 RGD:628755 PRKCDBP +HGNC:9401 PRKCE protein kinase C epsilon protein-coding gene gene with protein product Approved 2p21 02p21 protein kinase C, epsilon C2 domain containing protein kinases 835 1991-08-06 2016-01-27 2016-01-27 5581 ENSG00000171132 OTTHUMG00000128817 uc002rut.4 XM_017004486 CCDS1824 Q02156 "1382605|7877991" MGI:97599 RGD:61925 PRKCE 176975 objectId:1486 2.7.11.1 +HGNC:9402 PRKCG protein kinase C gamma protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "PKCC|MGC57564" PKC-gamma "PKCG|SCA14" protein kinase C, gamma C2 domain containing protein kinases 835 1991-08-02 2016-01-27 2016-10-12 5582 ENSG00000126583 OTTHUMG00000064846 uc002qcq.2 M13977 NM_002739 CCDS12867 P05129 "8432525|3755548" MGI:97597 RGD:3397 "Mutations of the Protein Kinase C γ|http://www.retina-international.org/files/sci-news/prkcgmut.htm|LRG_669|http://www.lrg-sequence.org/LRG/LRG_669" PRKCG 176980 118014 objectId:1484 2.7.11.1 +HGNC:9403 PRKCH protein kinase C eta protein-coding gene gene with protein product Approved 14q23.1 14q23.1 "PKC-L|PKCL" PRKCL protein kinase C, eta C2 domain containing protein kinases 835 1992-06-26 2016-01-27 2016-01-27 5583 ENSG00000027075 OTTHUMG00000152341 uc001xfn.4 M55284 NM_006255 CCDS9752 P24723 "1986216|1545821" MGI:97600 RGD:621888 PRKCH 605437 objectId:1487 2.7.11.1 +HGNC:9404 PRKCI protein kinase C iota protein-coding gene gene with protein product Approved 3q26.2 03q26.2 PKCI DXS1179E protein kinase C, iota 1994-07-06 2016-01-27 2016-10-05 5584 ENSG00000163558 OTTHUMG00000150214 uc003fgs.3 NM_002740 CCDS3212 P41743 "7607695|11978974" MGI:99260 RGD:620961 PRKCI 600539 objectId:1490 2.7.11.13 +HGNC:9410 PRKCQ protein kinase C theta protein-coding gene gene with protein product Approved 10p15.1 10p15.1 protein kinase C, theta C2 domain containing protein kinases 835 1992-12-14 2016-01-27 2016-10-05 5588 ENSG00000065675 OTTHUMG00000017623 uc001ijj.3 L07032 NM_006257 "CCDS7079|CCDS55701|CCDS60482" Q04759 8444877 MGI:97601 RGD:620968 PRKCQ 600448 objectId:1488 2.7.11.1 +HGNC:44689 PRKCQ-AS1 PRKCQ antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p14 10p14 ENST00000414894.1 2012-12-04 2015-11-04 439949 ENSG00000237943 OTTHUMG00000017622 uc057rnq.1 NR_036502 26421281 +HGNC:9411 PRKCSH protein kinase C substrate 80K-H protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "VASAP-60|GIIB" "advanced glycation end-product receptor 2|glucosidase II beta subunit|glucosidase 2 subunit beta|hepatocystin" "G19P1|PCLD|PLD1" polycystic liver disease "EF-hand domain containing|MRH domain containing " "863|1233" 1989-06-06 2016-04-27 5589 ENSG00000130175 OTTHUMG00000182029 uc010dyb.5 XM_017026977 "CCDS32911|CCDS45977|CCDS74286" P14314 12529853 MGI:107877 RGD:1309628 PRKCSH 177060 118020 2.7.11.1 +HGNC:9412 PRKCZ protein kinase C zeta protein-coding gene gene with protein product Approved 1p36.33 01p36.33 PKC2 protein kinase C, zeta 1991-08-06 2016-01-27 2016-10-05 5590 ENSG00000067606 OTTHUMG00000001238 uc001aiq.3 BC014270 NM_002744 "CCDS37|CCDS41229|CCDS55563" Q05513 MGI:97602 RGD:3399 PRKCZ 176982 objectId:1491 2.7.11.1 +HGNC:9407 PRKD1 protein kinase D1 protein-coding gene gene with protein product Approved 14q12 14q12 "PKCM|PKD|PKC-mu" PRKCM protein kinase C, mu Pleckstrin homology domain containing 682 1994-05-16 2004-10-30 2004-10-28 2016-10-05 5587 ENSG00000184304 OTTHUMG00000140203 uc001wqh.4 NM_002742 "CCDS9637|CCDS81796" Q15139 "8119958|10965134" MGI:99879 RGD:620964 PRKD1 605435 422348 objectId:1489 2.7.11.1 +HGNC:17293 PRKD2 protein kinase D2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "PKD2|HSPC187|DKFZP586E0820" Pleckstrin homology domain containing 682 2004-10-28 2014-11-19 25865 ENSG00000105287 OTTHUMG00000183431 uc002pfi.4 AF151021 NM_016457 "CCDS12689|CCDS59401" Q9BZL6 "11042152|11062248" MGI:2141917 RGD:1308054 PRKD2 607074 objectId:2173 +HGNC:9408 PRKD3 protein kinase D3 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 EPK2 PRKCN protein kinase C, nu Pleckstrin homology domain containing 682 1998-10-23 2004-10-30 2004-10-28 2016-10-05 23683 ENSG00000115825 OTTHUMG00000100961 uc002rqd.4 AB015982 NM_005813 CCDS1789 O94806 10231560 MGI:1922542 RGD:1310236 PRKD3 607077 objectId:2174 +HGNC:9413 PRKDC protein kinase, DNA-activated, catalytic polypeptide protein-coding gene gene with protein product Approved 8q11 08q11 "DNPK1|p350|DNAPK|XRCC7|DNA-PKcs" "HYRC|HYRC1" 1993-11-09 2016-10-12 5591 ENSG00000253729 OTTHUMG00000164239 uc033bkh.1 NM_001081640 "CCDS75734|CCDS75735" P78527 7638222 MGI:104779 RGD:1308982 LRG_162|http://www.lrg-sequence.org/LRG/LRG_162 PRKDC 600899 318754 objectId:2800 2.7.11.1 +HGNC:9414 PRKG1 protein kinase, cGMP-dependent, type I protein-coding gene gene with protein product Approved 10q11.23-q21.1 10q11.23-q21.1 "PGK|PKG" "PRKGR1B|PRKG1B" 1991-07-17 2016-10-11 5592 ENSG00000185532 OTTHUMG00000018248 uc001jjm.4 XM_017016412 "CCDS7244|CCDS44399" Q13976 "2792381|1544322" MGI:108174 RGD:1587390 PRKG1 176894 363279 objectId:1492 2.7.11.1 +HGNC:45029 PRKG1-AS1 PRKG1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q21.1 10q21.1 2013-01-08 2013-01-08 100506939 ENSG00000236671 OTTHUMG00000018251 uc057thi.1 BC039504 NR_038277 +HGNC:9416 PRKG2 protein kinase, cGMP-dependent, type II protein-coding gene gene with protein product Approved 4q21.21 04q21.21 "cGKII|PRKGR2" 1997-01-09 2016-10-05 5593 ENSG00000138669 OTTHUMG00000130296 uc003hmh.3 X94612 NM_006259 "CCDS3589|CCDS75150|CCDS64005" Q13237 7498513 MGI:108173 RGD:3401 PRKG2 601591 objectId:1493 2.7.11.1 +HGNC:9438 PRKRA protein activator of interferon induced protein kinase EIF2AK2 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 "PACT|RAX|HSD14|DYT16" protein activator of the interferon-induced protein kinase protein kinase, interferon-inducible double stranded RNA dependent activator 1999-12-07 2016-01-06 2016-01-06 8575 ENSG00000180228 OTTHUMG00000132576 uc002umf.3 AF072860 NM_003690 "CCDS2279|CCDS46460|CCDS46461" O75569 "9687506|10336432" MGI:1344375 RGD:1306707 PRKRA 603424 213048 +HGNC:33447 PRKRAP1 protein activator of interferon induced protein kinase EIF2AK2 pseudogene 1 pseudogene pseudogene Approved 6p21.3 alternate reference locus 06p21.3 alternate reference locus protein kinase, interferon-inducible double stranded RNA dependent activator pseudogene 1 2007-05-01 2016-02-24 2016-02-24 731716 XR_015579 +HGNC:21894 PRKRIP1 PRKR interacting protein 1 (IL11 inducible) protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "C114|FLJ13902|KRBOX3" "likely ortholog of mouse C114 dsRNA-binding protein|KRAB box domain containing 3" Zinc fingers C2H2-type 28 2003-08-19 2014-11-19 79706 ENSG00000128563 OTTHUMG00000157717 uc064gmw.1 AK023964 NM_024653 CCDS34714 Q9H875 12679338 MGI:1914051 RGD:1595708 PRKRIP1 1151 +HGNC:9441 PRKX protein kinase, X-linked protein-coding gene gene with protein product Approved Xp22.33 Xp22.33 PKX1 1995-11-22 2016-10-05 5613 ENSG00000183943 OTTHUMG00000021087 uc010nde.4 NM_005044 CCDS14125 P51817 7633447 MGI:1309999 RGD:1564076 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PRKX PRKX 300083 objectId:2175 2.7.11.1 +HGNC:40479 PRKX-AS1 PRKX antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.33 Xp22.33 PRKX antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100873944 ENSG00000236188 OTTHUMG00000021086 uc033dpf.2 NR_046643 +HGNC:9442 PRKXP1 protein kinase, X-linked, pseudogene 1 pseudogene pseudogene Approved 15q26.3 15q26.3 1997-01-16 2012-02-29 441733 ENSG00000259205 OTTHUMG00000172351 Y10483 NR_073405 9154127 PGOHUM00000246940 +HGNC:9443 PRKXP2 protein kinase, X-linked, pseudogene 2 pseudogene pseudogene Approved Xq13.1 Xq13.1 1997-01-16 2014-11-19 5615 NG_032178 +HGNC:9444 PRKY protein kinase, Y-linked, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 "PRKYP|PRKXP3" protein kinase, Y-linked 1995-11-22 2011-09-15 2014-11-18 5616 ENSG00000099725 OTTHUMG00000035301 NR_028062 O43930 7633447 PRKY 400008 PGOHUM00000258447 objectId:2176 +HGNC:9445 PRL prolactin protein-coding gene gene with protein product Approved 6p22.3 06p22.3 Growth hormone family 1175 1986-01-01 2015-09-07 5617 ENSG00000172179 OTTHUMG00000016111 uc003ndp.4 D00411 NM_000948 CCDS4548 P01236 MGI:97762 RGD:3403 PRL 176760 +HGNC:17945 PRLH prolactin releasing hormone protein-coding gene gene with protein product Approved 2q37.3 02q37.3 PRH Endogenous ligands 542 2004-06-24 2015-08-25 51052 ENSG00000071677 OTTHUMG00000133296 uc010znl.2 AB015419 NM_015893 CCDS2519 P81277 9607765 MGI:3644668 RGD:628634 PRLH 602663 +HGNC:4464 PRLHR prolactin releasing hormone receptor protein-coding gene gene with protein product Approved 10q26.11 10q26.11 PrRPR GPR10 G protein-coupled receptor 10 Peptide receptors 220 1995-01-25 2005-11-24 2005-11-24 2016-10-05 2834 ENSG00000119973 OTTHUMG00000019136 uc001ldp.2 AB048946 NM_004248 CCDS7606 P49683 "8666380|15885496" MGI:2135956 RGD:71037 PRLHR 600895 objectId:337 +HGNC:9446 PRLR prolactin receptor protein-coding gene gene with protein product Approved 5p13.2 05p13.2 1989-12-01 2016-10-05 5618 ENSG00000113494 OTTHUMG00000090789 uc032uqm.2 XM_006714484 "CCDS3909|CCDS56358|CCDS56359|CCDS56360|CCDS56361|CCDS56362" P16471 MGI:97763 RGD:3407 PRLR 176761 400642 objectId:1721 +HGNC:9447 PRM1 protamine 1 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 CT94.1 cancer/testis antigen family 94, member 1 1986-01-01 2016-10-05 5619 ENSG00000175646 OTTHUMG00000090521 uc002dav.4 NM_002761 CCDS10547 P04553 MGI:97765 RGD:1583873 PRM1 182880 +HGNC:9448 PRM2 protamine 2 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 CT94.2 cancer/testis antigen family 94, member 2 1990-02-24 2015-09-07 5620 ENSG00000122304 OTTHUMG00000172317 uc002dau.2 NM_001286356 "CCDS42118|CCDS66944" P04554 16632464 MGI:97766 RGD:3409 PRM2 182890 +HGNC:13732 PRM3 protamine 3 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 2000-10-19 2016-10-05 58531 ENSG00000178257 OTTHUMG00000172316 uc002dat.3 Z46940 NM_021247 CCDS76821 Q9NNZ6 "8720108|9827065" MGI:106601 RGD:1587265 PRM3 +HGNC:5187 PRMT1 protein arginine methyltransferase 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "HCP1|ANM1" HRMT1L2 "HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 2|HMT1 hnRNP methyltransferase-like 2 (S. cerevisiae)" Protein arginine methyltransferases 691 1996-10-02 2006-02-16 2006-02-16 2016-10-05 3276 ENSG00000126457 OTTHUMG00000167568 uc002ppe.4 D66904 NM_001536 "CCDS42592|CCDS46145|CCDS74425" Q99873 9545638 MGI:107846 RGD:62020 PRMT1 602950 objectId:1252 2.1.1.125 +HGNC:49611 PRMT1P1 protein arginine methyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 5q35.3 05q35.3 2014-01-24 2014-11-19 100420910 ENSG00000270706 OTTHUMG00000184564 NG_024644 PGOHUM00000258198 +HGNC:5186 PRMT2 protein arginine methyltransferase 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 MGC111373 HRMT1L1 "HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 1|HMT1 hnRNP methyltransferase-like 1 (S. cerevisiae)" Protein arginine methyltransferases 691 1996-10-02 2006-02-16 2006-02-16 2014-11-18 3275 ENSG00000160310 OTTHUMG00000048806 uc002zjx.5 U80213 NM_001535 "CCDS13737|CCDS56219|CCDS56220|CCDS68230|CCDS68231|CCDS74806" P55345 9545638 MGI:1316652 RGD:1565519 PRMT2 601961 objectId:1253 2.1.1.125 +HGNC:30163 PRMT3 protein arginine methyltransferase 3 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 HRMT1L3 HMT1 hnRNP methyltransferase-like 3 (S. cerevisiae) Protein arginine methyltransferases 691 2004-06-18 2006-02-16 2006-02-16 2014-11-19 10196 ENSG00000185238 OTTHUMG00000166022 uc001mqb.4 AF059531 NM_005788 "CCDS7853|CCDS44554" O60678 9642256 MGI:1919224 RGD:620413 PRMT3 603190 objectId:1254 +HGNC:10894 PRMT5 protein arginine methyltransferase 5 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 SKB1Hs "HRMT1L5|SKB1" "skb1 (S. pombe) homolog|SKB1 homolog (S. pombe)" Protein arginine methyltransferases 691 1999-06-18 2006-02-16 2006-02-16 2014-11-18 10419 ENSG00000100462 OTTHUMG00000028709 uc001whm.2 AF015913 XR_001750113 "CCDS9579|CCDS41922|CCDS61394|CCDS61395|CCDS61396" O14744 9843966 MGI:1351645 RGD:1309053 PRMT5 604045 objectId:1256 2.1.1.125 +HGNC:40533 PRMT5-AS1 PRMT5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q11.2 14q11.2 PRMT5 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-18 100505758 ENSG00000237054 OTTHUMG00000149898 uc058zlo.1 AK093277 NR_120599 +HGNC:32524 PRMT5P1 protein arginine methyltransferase 5 pseudogene 1 pseudogene pseudogene Approved 4q31.22 04q31.22 2014-01-24 2014-01-24 100420927 ENSG00000249004 OTTHUMG00000161356 NG_025173 PGOHUM00000261903 +HGNC:18241 PRMT6 protein arginine methyltransferase 6 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 FLJ10559 HRMT1L6 HMT1 hnRNP methyltransferase-like 6 (S. cerevisiae) Protein arginine methyltransferases 691 2004-06-22 2006-02-16 2006-02-16 2016-10-05 55170 ENSG00000198890 OTTHUMG00000010964 uc010ous.4 AK001421 NM_018137 CCDS41360 Q96LA8 11724789 MGI:2139971 RGD:1304701 PRMT6 608274 objectId:1257 2.1.1.319 +HGNC:25557 PRMT7 protein arginine methyltransferase 7 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ10640|KIAA1933" Protein arginine methyltransferases 691 2006-02-16 2014-11-18 54496 ENSG00000132600 OTTHUMG00000137556 uc059wfs.1 AK001502 NM_019023 "CCDS10866|CCDS54033" Q9NVM4 15044439 MGI:2384879 RGD:1304869 PRMT7 610087 objectId:1258 +HGNC:5188 PRMT8 protein arginine methyltransferase 8 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 "HRMT1L3|HRMT1L4" "HMT1 hnRNP methyltransferase-like 3 (S. cerevisiae)|HMT1 hnRNP methyltransferase-like 4 (S. cerevisiae)" Protein arginine methyltransferases 691 2000-08-01 2006-02-16 2006-02-16 2016-10-05 56341 ENSG00000111218 OTTHUMG00000128493 uc001qmf.5 AF263539 NM_019854 "CCDS8521|CCDS58200" Q9NR22 16051612 MGI:3043083 RGD:1587677 PRMT8 610086 objectId:1259 +HGNC:25099 PRMT9 protein arginine methyltransferase 9 protein-coding gene gene with protein product Approved 4q31.23 04q31.23 FLJ46629 PRMT10 protein arginine methyltransferase 10 (putative) Protein arginine methyltransferases 691 2009-05-15 2014-01-24 2014-01-24 2015-09-07 90826 ENSG00000164169 OTTHUMG00000161361 BC004337 XM_017008823 CCDS3771 Q6P2P2 "17708529|19300908|25737013" MGI:2142651 RGD:1306157 616125 objectId:1261 +HGNC:48942 PRNCR1 prostate cancer associated non-coding RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 PCAT8 prostate cancer associated transcript 8 (non-protein coding) Long non-coding RNAs 788 2013-07-18 2013-08-16 2013-08-16 2014-07-18 101867536 ENSG00000282961 OTTHUMG00000191472 AB458446 NR_109833 "20874843|23945587|24330491" 615452 +HGNC:15748 PRND prion protein 2 (dublet) protein-coding gene gene with protein product Approved 20p13 20p13 "DPL|dJ1068H6.4|DOPPEL|PrPLP" prion-like protein doppel 2001-05-30 2014-11-19 23627 ENSG00000171864 OTTHUMG00000031789 uc002wkz.5 AF106918 NM_012409 CCDS13081 Q9UKY0 "10525406|10577243" MGI:1346999 RGD:1306618 PRND 604263 +HGNC:9449 PRNP prion protein protein-coding gene gene with protein product Approved 20p13 20p13 "CD230|PRP|AltPrP" "Creutzfeldt-Jakob disease|Gerstmann-Strausler-Scheinker syndrome|fatal familial insomnia|p27-30" "PRIP|GSS|CJD" prion protein (p27-30) CD molecules 471 1986-01-01 2008-07-28 2015-08-25 5621 ENSG00000171867 OTTHUMG00000031786 uc021wae.3 M13899 NM_000311 CCDS13080 "F7VJQ1|P04156" MGI:97769 RGD:3410 Prion Protein/CJD database|http://www.mad-cow.org/~tom/prion_point_mutations.html PRNP 176640 118023 CD230 +HGNC:18046 PRNT prion protein (testis specific) other unknown Approved 20p13 20p13 M8 M8 protein 2002-09-17 2014-11-19 149830 ENSG00000180259 OTTHUMG00000031785 uc002wlb.4 "AL137296|AJ427539" NM_177549 Q86SH4 12514748 PRNT +HGNC:41906 PROB1 proline rich basic protein 1 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 C5orf65 chromosome 5 open reading frame 65 2011-08-15 2012-10-01 2016-06-06 2016-06-06 389333 ENSG00000228672 OTTHUMG00000185568 uc011czc.2 AK316483 NM_001161546 CCDS54909 E7EW31 MGI:2686460 RGD:1594845 +HGNC:9451 PROC protein C, inactivator of coagulation factors Va and VIIIa protein-coding gene gene with protein product Approved 2q14.3 02q14.3 prepro-protein C protein C (inactivator of coagulation factors Va and VIIIa) "Endogenous ligands|Gla domain containing" "542|1250" 2001-06-22 2015-11-18 2016-10-12 5624 ENSG00000115718 OTTHUMG00000131528 uc002tok.4 X02750 NM_000312 CCDS2145 P04070 "2991887|2437584" MGI:97771 RGD:3411 "3d Protein C Mutations Database|http://www.itb.cnr.it/procmd/|LRG_599|http://www.lrg-sequence.org/LRG/LRG_599" PROC 612283 118030 S01.218 objectId:2396 3.4.21.69 +HGNC:28600 PROCA1 protein interacting with cyclin A1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 MGC39650 proline-rich cyclin A1-interacting protein 2009-04-20 2009-04-20 2014-11-19 147011 ENSG00000167525 OTTHUMG00000132682 uc002hca.2 BC029574 NM_152465 CCDS11239 Q8NCQ7 15159402 MGI:1918274 RGD:1561727 PROCA1 +HGNC:9452 PROCR protein C receptor protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "EPCR|CCD41|CD201" protein C receptor, endothelial CD molecules 471 2000-06-26 2015-12-16 2016-10-12 10544 ENSG00000101000 OTTHUMG00000032323 uc284prb.1 L35545 NM_006404 CCDS13248 Q9UNN8 "7929370|10518938" MGI:104596 RGD:1305991 LRG_638|http://www.lrg-sequence.org/LRG/LRG_638 PROCR 600646 258949 CD201 +HGNC:9453 PRODH proline dehydrogenase 1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "HSPOX2|PRODH1|PIG6|PRODH2|TP53I6" proline oxidase proline dehydrogenase (proline oxidase ) 1996-12-12 2016-04-27 2016-10-05 5625 ENSG00000100033 OTTHUMG00000150163 uc002zok.5 AF010310 NM_016335 "CCDS13754|CCDS56223" O43272 "9385373|10192398" MGI:97770 RGD:1590932 PRODH 606810 118032 1.5.5.2 +HGNC:17325 PRODH2 proline dehydrogenase 2 protein-coding gene gene with protein product Approved 19q13.1 19q13.1 HSPOX1 proline dehydrogenase (oxidase) 2 2002-01-03 2016-04-27 2016-04-27 58510 ENSG00000250799 OTTHUMG00000180688 uc002obx.1 U80018 NM_021232 CCDS12478 Q9UF12 MGI:1929093 RGD:1306761 PRODH2 616377 1.5.5.2 +HGNC:18454 PROK1 prokineticin 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "PK1|PRK1|EGVEGF" "black mamba toxin-related protein|mambakine" Endogenous ligands 542 2002-07-22 2016-10-05 84432 ENSG00000143125 OTTHUMG00000011569 uc001dzs.4 AF333024 NM_032414 CCDS825 P58294 11259612 MGI:2180370 RGD:620898 PROK1 606233 +HGNC:18455 PROK2 prokineticin 2 protein-coding gene gene with protein product Approved 3p13 03p13 "PK2|BV8|MIT1|KAL4" protein Bv8 homolog Endogenous ligands 542 2002-07-22 2016-10-05 60675 ENSG00000163421 OTTHUMG00000158809 uc003doz.5 AF333025 NM_001126128 "CCDS2916|CCDS46868" Q9HC23 "11054548|11259612" MGI:1354178 RGD:620280 PROK2 607002 118039 +HGNC:4524 PROKR1 prokineticin receptor 1 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "PKR1|ZAQ|GPR73a" GPR73 G protein-coupled receptor 73 Prokineticin receptors 216 1999-07-30 2006-02-15 2006-02-15 2016-10-05 10887 ENSG00000169618 OTTHUMG00000129567 uc010yqj.3 AF506287 NM_138964 CCDS1889 Q8TCW9 10760605 MGI:1929676 RGD:708443 PROKR1 607122 objectId:335 +HGNC:15836 PROKR2 prokineticin receptor 2 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "GPR73b|PKR2|GPRg2|dJ680N4.3" "GPR73L1|KAL3" "G protein-coupled receptor 73-like 1|Kallmann syndrome 3 (autosomal dominant)" Prokineticin receptors 216 2001-09-17 2006-02-15 2006-02-15 2014-11-19 128674 ENSG00000101292 OTTHUMG00000031800 uc010zqw.3 AL121755 NM_144773 CCDS13089 Q8NFJ6 "11886876|17054399" MGI:2181363 RGD:708445 PROKR2 607123 118044 objectId:336 +HGNC:9454 PROM1 prominin 1 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "AC133|CD133|RP41|CORD12" "PROML1|MCDR2|STGD4" "prominin (mouse)-like 1|macular dystrophy, retinal 2|Stargardt disease 4 (autosomal dominant)" CD molecules 471 1999-04-15 2003-03-28 2001-11-28 2016-10-05 8842 ENSG00000007062 OTTHUMG00000160180 uc062vja.1 AF027208 NM_006017 "CCDS47029|CCDS54746|CCDS54747|CCDS54748" O43490 11467842 MGI:1100886 RGD:69367 "Mutations of the Prominin (mouse)-like 1 gene (PROML1)|http://www.retina-international.org/files/sci-news/promlmut.htm|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=PROM1" PROM1 604365 159821 CD133 +HGNC:20685 PROM2 prominin 2 protein-coding gene gene with protein product Approved 2q11.1 02q11.1 2003-03-25 2015-08-25 150696 ENSG00000155066 OTTHUMG00000130393 uc002sui.4 AF245303 NM_144707 CCDS2012 Q8N271 12514187 MGI:2138997 RGD:621435 PROM2 +HGNC:9455 PROP1 PROP paired-like homeobox 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 prophet of Pit1, paired-like homeodomain transcription factor PRD class homeoboxes and pseudogenes 521 1998-02-02 2007-07-12 2015-08-25 5626 ENSG00000175325 OTTHUMG00000130887 uc003mif.1 AF076215 NM_006261 CCDS4430 O75360 9462743 MGI:109330 RGD:628759 PROP1 601538 8504 118051 +HGNC:34379 PRORSD1P prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 "Prdxdd1|Ybakd1" YBak domain containing 1 "NCRNA00117|PRDXDD1P" "non-protein coding RNA 117|PrdX deacylase domain containing 1, pseudogene" 2008-09-12 2010-09-27 2010-09-28 2014-11-18 344405 ENSG00000162997 OTTHUMG00000176755 CR612843 NR_027258 A6NEY8 MGI:1915189 RGD:1308179 +HGNC:38732 PRORY proline rich, Y-linked protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 CYorf17 chromosome Y open reading frame 17 2010-07-28 2014-05-22 2014-05-22 2014-05-22 100533178 ENSG00000183146 OTTHUMG00000042036 AK026367 XM_017030026 CCDS65369 Q9H606 +HGNC:9456 PROS1 protein S (alpha) protein-coding gene gene with protein product Approved 3q11.1 03q11.1 PROS Gla domain containing 1250 1986-01-01 2016-10-12 5627 ENSG00000184500 OTTHUMG00000150354 uc003drb.5 NM_000313 CCDS2923 P07225 "214811|1833851" MGI:1095733 RGD:620971 "Protein S Deficiency: A database of Mutations|http://www.isth.org/|LRG_572|http://www.lrg-sequence.org/LRG/LRG_572" PROS1 176880 118053 +HGNC:9458 PROS2P protein S (beta) pseudogene pseudogene pseudogene Approved 3p11.1 03p11.1 "PROS2|PROSP" protein S 2 1989-05-10 2015-03-19 2015-03-19 2015-03-19 5628 ENSG00000189002 OTTHUMG00000159045 NG_001179 2148112 PGOHUM00000250250 +HGNC:9457 PROSC proline synthetase cotranscribed homolog (bacterial) protein-coding gene gene with protein product Approved 8p11.23 08p11.23 proline synthetase co-transcribed (bacterial homolog) 1998-10-16 2016-05-25 2016-10-05 11212 ENSG00000147471 OTTHUMG00000164024 uc003xkh.4 AB018566 NM_007198 CCDS6096 O94903 MGI:1891207 RGD:1308962 PROSC 604436 +HGNC:20291 PROSER1 proline and serine rich 1 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "bA50D16.2|FLJ12661" C13orf23 chromosome 13 open reading frame 23 2004-04-16 2011-08-09 2011-08-09 2016-10-05 80209 ENSG00000120685 OTTHUMG00000016764 uc001uwy.5 AK022723 NM_025138 CCDS9368 Q86XN7 MGI:1919933 RGD:1309403 +HGNC:23728 PROSER2 proline and serine rich 2 protein-coding gene gene with protein product Approved 10p14 10p14 MGC35403 C10orf47 "chromosome 10 open reading frame 47|proline and serine-rich protein 2" 2003-12-08 2012-12-05 2014-02-19 2014-11-19 254427 ENSG00000148426 OTTHUMG00000017673 uc001ikx.3 BC017269 NM_153256 CCDS7085 Q86WR7 12477932 MGI:2442238 RGD:1586830 +HGNC:27343 PROSER2-AS1 PROSER2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p14 10p14 2012-12-05 2014-11-19 219731 ENSG00000225778 OTTHUMG00000017674 uc001iky.3 NR_038222 +HGNC:25204 PROSER3 proline and serine rich 3 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ30657 C19orf55 chromosome 19 open reading frame 55 2006-08-21 2014-05-30 2014-05-30 2014-11-19 148137 ENSG00000167595 OTTHUMG00000168103 AK055219 NM_144692 Q2NL68 14702039 MGI:2681861 RGD:1565712 +HGNC:9459 PROX1 prospero homeobox 1 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 prospero-related homeobox 1 PROS class homeoboxes 528 1998-05-18 2007-06-01 2016-10-05 5629 ENSG00000117707 OTTHUMG00000036946 uc057pjq.1 U44060 NM_002763 CCDS31021 Q92786 8812486 MGI:97772 RGD:1306890 PROX1 601546 8505 +HGNC:43656 PROX1-AS1 PROX1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q32.3 01q32.3 PROX1 antisense RNA 1 (non-protein coding) 2012-01-23 2012-08-15 2015-08-03 100505832 ENSG00000230461 OTTHUMG00000036947 uc031psa.2 AK092251 NR_037850 +HGNC:41372 PROX1-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:26715 PROX2 prospero homeobox 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FLJ36749 PROS class homeoboxes 528 2007-02-15 2016-04-25 283571 ENSG00000119608 OTTHUMG00000171481 uc059dkf.1 XM_017021222 "CCDS45136|CCDS73663" Q3B8N5 MGI:1920672 RGD:1310315 PROX2 615094 8632 +HGNC:9460 PROZ protein Z, vitamin K dependent plasma glycoprotein protein-coding gene gene with protein product Approved 13q34 13q34 PZ protein Z, vitamin K-dependent plasma glycoprotein Gla domain containing 1250 1999-06-03 2016-04-05 2016-04-05 8858 ENSG00000126231 OTTHUMG00000017376 uc001vta.3 M55670 NM_003891 "CCDS9531|CCDS58300" P22891 "2244898|2403355" MGI:1860488 RGD:1308666 PROZ 176895 391022 S01.979 +HGNC:17348 PRPF3 pre-mRNA processing factor 3 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "Prp3|hPrp3|SNRNP90" RP18 "retinitis pigmentosa 18 (autosomal dominant)|PRP3 pre-mRNA processing factor 3 homolog (yeast)|PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)" 2003-12-05 2013-06-10 2016-10-05 9129 ENSG00000117360 OTTHUMG00000012807 uc001eum.5 AF001947 NM_004698 CCDS951 O43395 MGI:1918017 RGD:1310555 PRPF3 607301 118056 +HGNC:17349 PRPF4 pre-mRNA processing factor 4 protein-coding gene gene with protein product Approved 9q32 09q32 "Prp4p|HPRP4|HPRP4P|PRP4|SNRNP60" "PRP4/STK/WD splicing factor|U4/U6 small nuclear ribonucleoprotein Prp4" PRP4 pre-mRNA processing factor 4 homolog (yeast) WD repeat domain containing 362 2002-05-03 2013-10-03 2016-10-05 9128 ENSG00000136875 OTTHUMG00000020517 uc004bgx.4 AF001687 NM_004697 "CCDS6791|CCDS59142" O43172 "9257651|9404889" MGI:1917302 RGD:1311303 PRPF4 607795 403096 +HGNC:17346 PRPF4B pre-mRNA processing factor 4B protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "Prp4|PR4H|KIAA0536" PRP4 pre-mRNA processing factor 4 homolog B (yeast) 2002-08-22 2013-10-03 2016-10-05 8899 ENSG00000112739 OTTHUMG00000014157 uc003mvv.4 U48736 XM_017011410 CCDS4488 Q13523 "9628581|11418604" MGI:109584 RGD:1307784 PRPF4B 602338 objectId:2177 +HGNC:15860 PRPF6 pre-mRNA processing factor 6 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "TOM|bB152O15.1|ANT-1|U5-102K|Prp6|hPrp6|SNRNP102|RP60" C20orf14 "chromosome 20 open reading frame 14|PRP6 pre-mRNA processing factor 6 homolog (yeast)|PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)" 2001-06-21 2006-03-23 2013-06-10 2015-08-25 24148 ENSG00000101161 OTTHUMG00000033018 uc002yho.4 AF026031 NM_012469 CCDS13550 O94906 "10561546|10788320" MGI:1922946 RGD:1307103 PRPF6 613979 266150 +HGNC:17340 PRPF8 pre-mRNA processing factor 8 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "PRPC8|Prp8|hPrp8|SNRNP220" RP13 "PRP8 pre-mRNA processing factor 8 homolog (yeast)|PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)" 2001-12-11 2013-06-10 2014-11-19 10594 ENSG00000174231 OTTHUMG00000090553 uc002fte.3 AB007510 NM_006445 CCDS11010 Q6P2Q9 "11468273|10411133" MGI:2179381 RGD:1305467 Mutations of the Precursor mRNA Processing Protein 8|http://www.retina-international.org/files/sci-news/prpc8mut.htm PRPF8 607300 118066 +HGNC:17351 PRPF18 pre-mRNA processing factor 18 protein-coding gene gene with protein product Approved 10p13 10p13 hPrp18 "PRP18 pre-mRNA processing factor 18 homolog (yeast)|PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)" 2002-05-28 2013-06-10 2016-10-05 8559 ENSG00000165630 OTTHUMG00000017702 uc001imp.4 U51990 XR_001747249 CCDS7100 Q99633 9000057 MGI:1914479 RGD:708550 PRPF18 604993 +HGNC:17896 PRPF19 pre-mRNA processing factor 19 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "UBOX4|NMP200|PSO4|hPSO4" "nuclear matrix protein NMP200 related to splicing factor PRP19|psoralen 4" PRP19 "PRP19/PSO4 homolog (S. cerevisiae)|PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)" "WD repeat domain containing|U-box domain containing" "362|365" 2004-02-16 2005-04-01 2013-06-10 2014-11-19 27339 ENSG00000110107 OTTHUMG00000167798 uc001nqf.4 BC018698 NM_014502 CCDS7995 Q9UMS4 12960389 MGI:106247 RGD:708496 PRPF19 608330 +HGNC:23182 PRPF19P1 PRPF19 pseudogene 1 pseudogene pseudogene Approved 18q22.1 18q22.1 HsT1682 "PRP19P|PRPF19P" PRP19 pre-mRNA processing factor 19 homolog (S. cerevisiae) pseudogene 2004-02-16 2013-06-10 2013-06-10 2014-11-19 100422496 ENSG00000264685 OTTHUMG00000178514 NG_026300 PGOHUM00000234951 +HGNC:15446 PRPF31 pre-mRNA processing factor 31 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "NY-BR-99|PRP31|hPrp31|SNRNP61" RP11 "PRP31 pre-mRNA processing factor 31 homolog (yeast)|PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)" 2001-11-21 2013-06-10 2016-10-05 26121 ENSG00000105618 OTTHUMG00000066040 uc002qdh.3 AL050369 XM_006723137 CCDS12879 Q8WWY3 11545739 MGI:1916238 RGD:1305832 Mutations of the RNA Processing Factor 31|http://www.retina-international.org/files/sci-news/prp31mut.htm PRPF31 606419 118061 +HGNC:25930 PRPF38A pre-mRNA processing factor 38A protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "FLJ14936|Prp38" PRP38 pre-mRNA processing factor 38 (yeast) domain containing A 2005-05-24 2013-10-03 2014-11-19 84950 ENSG00000134748 OTTHUMG00000008199 uc001ctv.5 AK092038 NM_032864 CCDS567 Q8NAV1 12477932 MGI:1916962 RGD:1311129 PRPF38A 617031 +HGNC:44692 PRPF38AP1 PRP38 domain containing A pseudogene 1 pseudogene pseudogene Approved 10p14 10p14 2012-12-04 2012-12-04 389935 ENSG00000225053 OTTHUMG00000017644 NG_022160 PGOHUM00000238671 +HGNC:44693 PRPF38AP2 PRP38 domain containing A pseudogene 2 pseudogene pseudogene Approved 10p12.33 10p12.33 2012-12-04 2012-12-04 100131947 ENSG00000236582 OTTHUMG00000017752 NG_022162 PGOHUM00000238679 +HGNC:25512 PRPF38B pre-mRNA processing factor 38B protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "FLJ10330|NET1" PRP38 pre-mRNA processing factor 38 (yeast) domain containing B 2005-05-24 2013-10-03 2014-11-18 55119 ENSG00000134186 OTTHUMG00000010991 uc001dvv.5 AL833950 NM_018061 CCDS788 Q5VTL8 MGI:1914171 RGD:1562940 PRPF38B +HGNC:20314 PRPF39 pre-mRNA processing factor 39 protein-coding gene gene with protein product Approved 14q21.2 14q21.2 "FLJ20666|FLJ11128" "PRP39 pre-mRNA processing factor 39 homolog (yeast)|PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)" 2003-01-22 2013-10-03 2016-10-05 55015 ENSG00000185246 OTTHUMG00000140265 uc001wvz.4 AK000673 NM_017922 CCDS9682 Q86UA1 MGI:104602 RGD:1308702 PRPF39 614907 +HGNC:16463 PRPF40A pre-mRNA processing factor 40 homolog A protein-coding gene gene with protein product Approved 2q23.3 02q23.3 "FLJ20585|FBP11|HYPA|NY-REN-6|HIP10|FBP-11|FLAF1|Prp40" FNBP3 "formin-binding protein 3|formin binding protein 3|PRP40 pre-mRNA processing factor 40 homolog A (yeast)|PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)|PRP40 pre-mRNA processing factor 40 homolog A" 2001-08-28 2006-01-13 2015-11-27 2015-11-27 55660 ENSG00000196504 OTTHUMG00000154031 uc002tyh.5 AF049523 XM_371575 CCDS46430 O75400 "9724750|12460579" MGI:1860512 RGD:1311401 PRPF40A 612941 +HGNC:25031 PRPF40B pre-mRNA processing factor 40 homolog B protein-coding gene gene with protein product Approved 12q13.12 12q13.12 HYPC Huntingtin interacting protein C "PRP40 pre-mRNA processing factor 40 homolog B (yeast)|PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)|PRP40 homolog, pre-mRNA processing factor B" 2006-01-13 2015-11-27 2016-10-12 25766 ENSG00000110844 OTTHUMG00000169568 uc001rus.3 AF049525 NM_012272 CCDS31796 Q6NWY9 "9700202|25605964" MGI:1925583 RGD:1565411 LRG_625|http://www.lrg-sequence.org/LRG/LRG_625 PRPF40B +HGNC:9461 PRPH peripherin protein-coding gene gene with protein product Approved 12q13.12 12q13.12 PRPH1 NEF4 Intermediate filaments Type III 610 1992-02-27 2016-01-15 5630 ENSG00000135406 OTTHUMG00000167140 uc001rtu.4 NM_006262 CCDS8783 P41219 1378416 MGI:97774 RGD:3414 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ PRPH 170710 209470 HGNC:9461 +HGNC:9942 PRPH2 peripherin 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "TSPAN22|rd2|CACD2" "RP7|RDS" "retinal degeneration, slow (retinitis pigmentosa 7)|retinal degeneration, slow|peripherin 2 (retinal degeneration, slow)" Tetraspanins 768 1990-03-06 2006-11-23 2016-06-01 2016-06-01 5961 ENSG00000112619 OTTHUMG00000014701 uc003osk.4 NM_000322 CCDS4871 P23942 1749427 MGI:102791 RGD:3549 PRPH2 179605 118070 +HGNC:9462 PRPS1 phosphoribosyl pyrophosphate synthetase 1 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "CMTX5|DFNX1" "PRS I|ribose-phosphate diphosphokinase 1" DFN2 deafness, X-linked 2, perceptive, congenital 2001-06-22 2016-10-12 5631 ENSG00000147224 OTTHUMG00000022167 uc004ene.5 X15331 NM_002764 "CCDS14529|CCDS76007" P60891 "1962753|20021999" MGI:97775 RGD:61955 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PRPS1|LRG_264|http://www.lrg-sequence.org/LRG/LRG_264" PRPS1 311850 118076 2.7.6.1 +HGNC:9463 PRPS1L1 phosphoribosyl pyrophosphate synthetase 1-like 1 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 PRPS3 PRPSL 1989-05-10 2015-09-07 221823 ENSG00000229937 OTTHUMG00000152742 uc003stz.5 M57423 NM_175886 CCDS47552 P21108 2168892 MGI:1922706 RGD:1306328 PRPS1L1 611566 +HGNC:39427 PRPS1P1 phosphoribosyl pyrophosphate synthetase 1 pseudogene 1 pseudogene pseudogene Approved 2q24.3 02q24.3 2010-12-13 2010-12-14 2011-01-05 100861436 ENSG00000226847 OTTHUMG00000153936 NG_032007 PGOHUM00000241005 +HGNC:9464 PRPS1P2 phosphoribosyl pyrophosphate synthetase 1 pseudogene 2 pseudogene pseudogene Approved 9q33.3 09q33.3 PRPS1L2 phosphoribosyl pyrophosphate synthetase 1-like 2 1989-05-10 2010-12-13 2010-12-13 2010-12-13 100421295 ENSG00000232630 OTTHUMG00000020669 NG_023956 "1962753|2536962" PGOHUM00000236770 +HGNC:9465 PRPS2 phosphoribosyl pyrophosphate synthetase 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "PRS II|ribose-phosphate diphosphokinase 2" 2001-06-22 2014-11-19 5634 ENSG00000101911 OTTHUMG00000021139 uc004cvb.4 Y00971 NM_002765 "CCDS14150|CCDS43918" P11908 1962753 MGI:97776 RGD:3415 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PRPS2 PRPS2 311860 2.7.6.1 +HGNC:9466 PRPSAP1 phosphoribosyl pyrophosphate synthetase associated protein 1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 PAP39 1995-05-01 2016-07-01 2016-10-05 5635 ENSG00000161542 OTTHUMG00000155969 uc010wta.2 D61391 NM_002766 "CCDS11743|CCDS82209" Q14558 8660991 MGI:1915013 RGD:620206 PRPSAP1 601249 +HGNC:9467 PRPSAP2 phosphoribosyl pyrophosphate synthetase associated protein 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 PAP41 phosphoribosyl pyrophosphate synthetase-associated protein 2 1998-05-15 2016-04-01 2016-10-05 5636 ENSG00000141127 OTTHUMG00000059406 uc010vyj.3 AB007851 NM_002767 "CCDS11200|CCDS58525|CCDS58526|CCDS58527" O60256 9806849 MGI:2384838 RGD:620207 PRPSAP2 603762 +HGNC:21149 PRR3 proline rich 3 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "CAT56|Em:AB014077.1|Em:AB023052.2" proline-rich polpeptide 3 Zinc fingers CCCH-type 73 2003-05-21 2004-05-27 2016-10-05 80742 ENSG00000204576 OTTHUMG00000031037 uc003nqi.3 AK074531 NM_025263 "CCDS43440|CCDS43441" P79522 MGI:1922460 RGD:1303270 PRR3 +HGNC:18020 PRR4 proline rich 4 (lacrimal) protein-coding gene gene with protein product Approved 12p13 12p13 LPRP PROL4 2002-01-21 2004-05-28 2014-11-19 11272 ENSG00000111215 OTTHUMG00000168522 uc001qyz.5 NM_007244 "CCDS41756|CCDS55804" Q16378 7544782 PRR4 605359 +HGNC:31682 PRR5 proline rich 5 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "PP610|FLJ20185k|Protor-1" protein observed with Rictor-1 proline rich 5 (renal) MTOR complex 2 1333 2006-03-16 2015-12-07 2016-10-05 55615 ENSG00000186654 OTTHUMG00000150460 uc010gzt.2 AF177331 NM_001017528 "CCDS14058|CCDS14059|CCDS56232|CCDS74875" P85299 "15718101|17599906" MGI:1924714 RGD:1307954 PRR5 609406 +HGNC:34512 PRR5-ARHGAP8 PRR5-ARHGAP8 readthrough other readthrough Approved 22q13.31 22q13.31 2009-11-05 2016-10-05 553158 ENSG00000248405 OTTHUMG00000160954 uc062ezy.1 NM_181334 CCDS54538 MGI:1920417 PRR5-ARHGAP8 +HGNC:25878 PRR5L proline rich 5 like protein-coding gene gene with protein product Approved 11p13-p12 11p13-p12 "FLJ14213|PROTOR-2" protein observed with Rictor-2 2009-05-29 2016-10-11 79899 ENSG00000135362 OTTHUMG00000166334 uc001mwo.5 NM_024841 "CCDS31463|CCDS53617" Q6MZQ0 17461779 MGI:1919696 RGD:1309969 PRR5L 611728 +HGNC:28130 PRR7 proline rich 7, synaptic protein-coding gene gene with protein product Approved 5q35.3 05q35.3 MGC10772 proline rich 7 (synaptic) 2005-01-20 2016-09-09 2016-09-09 80758 ENSG00000131188 OTTHUMG00000130861 uc003mgu.2 BC021240 NM_030567 CCDS4419 Q8TB68 15629447 MGI:3487246 RGD:1561898 PRR7 +HGNC:27961 PRR7-AS1 PRR7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q35.3 05q35.3 PRR7 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 340037 ENSG00000246334 OTTHUMG00000163400 uc021yiv.2 BC041422 NR_038915 12477932 +HGNC:32057 PRR9 proline rich 9 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 2005-07-11 2015-08-25 574414 ENSG00000203783 OTTHUMG00000013936 uc021ozw.1 AL161636 NM_001195571 CCDS55639 Q5T870 MGI:1925680 RGD:2320351 PRR9 +HGNC:25619 PRR11 proline rich 11 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 FLJ11029 2005-12-13 2016-04-01 55771 ENSG00000068489 OTTHUMG00000179362 uc060ibs.1 NM_018304 CCDS11614 Q96HE9 11799066 MGI:2444496 RGD:1561541 PRR11 615920 +HGNC:29217 PRR12 proline rich 12 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 KIAA1205 KIAA1205 2004-02-10 2006-02-06 2006-02-06 2014-11-19 57479 ENSG00000126464 OTTHUMG00000183275 uc002poo.5 AB033031 NM_020719 CCDS46143 Q9ULL5 10574462 MGI:2679002 RGD:1309896 PRR12 616633 +HGNC:24528 PRR13 proline rich 13 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "FLJ23818|DKFZP564J157" 2006-03-01 2014-12-08 54458 ENSG00000205352 OTTHUMG00000170049 uc058oqb.1 AF217517 NM_018457 "CCDS31811|CCDS44899" Q9NZ81 11230166 MGI:1913401 RGD:1307129 PRR13 610459 +HGNC:50614 PRR13P1 proline rich 13 pseudogene 1 pseudogene pseudogene Approved 1q31.3 01q31.3 2014-05-28 2014-05-28 647195 ENSG00000232824 OTTHUMG00000035654 NG_030203 PGOHUM00000261293 +HGNC:50615 PRR13P2 proline rich 13 pseudogene 2 pseudogene pseudogene Approved 11p15.4 11p15.4 2014-05-28 2015-03-09 106480303 ENSG00000254884 OTTHUMG00000165752 NG_045790 PGOHUM00000290392 +HGNC:50616 PRR13P3 proline rich 13 pseudogene 3 pseudogene pseudogene Approved 11q23.3 11q23.3 2014-05-28 2015-03-09 100129201 ENSG00000271412 OTTHUMG00000184783 NG_029238 PGOHUM00000290717 +HGNC:50617 PRR13P4 proline rich 13 pseudogene 4 pseudogene pseudogene Approved 18q21.1 18q21.1 2014-05-28 2015-03-09 100288008 ENSG00000264971 OTTHUMG00000179700 NG_030065 PGOHUM00000294779 +HGNC:50618 PRR13P5 proline rich 13 pseudogene 5 pseudogene pseudogene Approved 19q13.2 19q13.2 2014-05-28 2015-03-09 440525 ENSG00000187534 OTTHUMG00000182585 NG_005548 PGOHUM00000295002 +HGNC:50619 PRR13P6 proline rich 13 pseudogene 6 pseudogene pseudogene Approved 7q11.21 07q11.21 2014-05-28 2015-02-03 PGOHUM00000261493 +HGNC:50620 PRR13P7 proline rich 13 pseudogene 7 pseudogene pseudogene Approved 8q21.3 08q21.3 2014-05-28 2015-03-09 100289644 ENSG00000271202 OTTHUMG00000184728 NG_032746 PGOHUM00000303302 +HGNC:28458 PRR14 proline rich 14 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC3121 2006-04-04 2014-11-19 78994 ENSG00000156858 OTTHUMG00000132414 uc002dyy.4 AK074783 NM_024031 CCDS10687 Q9BWN1 12477932 MGI:2384565 RGD:1594592 PRR14 +HGNC:28738 PRR14L proline rich 14 like protein-coding gene gene with protein product Approved 22q12.2 22q12.2 MGC50372 C22orf30 "chromosome 22 open reading frame 30|proline rich 14-like" 2006-07-05 2011-01-25 2016-01-18 2016-01-18 253143 ENSG00000183530 OTTHUMG00000030139 uc003alp.5 BC040859 NM_173566 CCDS13900 Q5THK1 12477932 MGI:2443658 RGD:1305469 PRR14L +HGNC:22310 PRR15 proline rich 15 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 2006-08-21 2016-10-05 222171 ENSG00000176532 OTTHUMG00000128555 uc003tac.1 BC029131 NM_175887 CCDS5421 Q8IV56 12477932 MGI:1925254 RGD:1311589 PRR15 +HGNC:28149 PRR15L proline rich 15 like protein-coding gene gene with protein product Approved 17q21.32 17q21.32 MGC11242 ATAD4 "ATPase family, AAA domain containing 4|proline rich 15-like" 2005-12-16 2009-11-11 2016-01-18 2016-01-18 79170 ENSG00000167183 OTTHUMG00000178297 uc002imp.5 BC002865 NM_024320 CCDS11523 Q9BU68 MGI:2387599 RGD:1592397 PRR15L +HGNC:29654 PRR16 proline rich 16 protein-coding gene gene with protein product Approved 5q23.1 05q23.1 DSC54 Largen 2006-08-22 2016-06-23 51334 ENSG00000184838 OTTHUMG00000128903 uc003ksq.4 AF242769 NM_016644 "CCDS4127|CCDS75290|CCDS78053" Q569H4 "15971941|24656129" MGI:1918623 RGD:1564528 PRR16 615931 +HGNC:28574 PRR18 proline rich 18 protein-coding gene gene with protein product Approved 6q27 06q27 MGC35308 proline rich region 18 2007-06-14 2009-01-27 2014-11-19 285800 ENSG00000176381 OTTHUMG00000167034 uc003quw.2 BC034775 NM_175922 CCDS5291 Q8N4B5 12477932 MGI:2443403 RGD:1564079 PRR18 +HGNC:33728 PRR19 proline rich 19 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 MGC70924 2007-12-17 2014-11-19 284338 ENSG00000188368 OTTHUMG00000182796 uc002oti.3 AK124116 NM_199285 CCDS33036 A6NJB7 MGI:3648539 RGD:1595416 PRR19 +HGNC:24754 PRR20A proline rich 20A protein-coding gene gene with protein product Approved 13q21.1 13q21.1 FLJ40296 PRR20 proline rich 20 2009-01-27 2009-10-08 2009-10-08 2015-09-07 122183 ENSG00000204919 OTTHUMG00000160602 uc010thd.1 BC120931 NM_198441 CCDS31981 P86496 +HGNC:37220 PRR20B proline rich 20B protein-coding gene gene with protein product Approved 13q21.1 13q21.1 2009-10-08 2015-09-07 729233 ENSG00000204918 OTTHUMG00000184243 uc010the.1 NM_001130404 CCDS45053 P86481 PRR20B +HGNC:37221 PRR20C proline rich 20C protein-coding gene gene with protein product Approved 13q21.1 13q21.1 2009-10-08 2015-09-07 729240 ENSG00000229665 OTTHUMG00000184244 uc058xhy.1 NM_001130405 CCDS45054 P86479 PRR20C +HGNC:37222 PRR20D proline rich 20D protein-coding gene gene with protein product Approved 13q21.1 13q21.1 2009-10-08 2015-09-07 729246 ENSG00000227151 OTTHUMG00000184245 uc010thg.1 NM_001130406 CCDS45055 P86480 PRR20D +HGNC:37223 PRR20E proline rich 20E protein-coding gene gene with protein product Approved 13q21.1 13q21.1 2009-10-08 2015-09-07 729250 ENSG00000234278 OTTHUMG00000184246 uc010thh.1 NM_001130407 CCDS45056 P86478 RGD:1591392 PRR20E +HGNC:49097 PRR20FP proline rich 20F, pseudogene pseudogene pseudogene Approved 13q21.1 13q21.1 PRR20F 2013-09-02 2013-09-02 106480416 ENSG00000271140 OTTHUMG00000184247 NG_045347 PGOHUM00000248605 +HGNC:33866 PRR21 proline rich 21 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 2009-04-20 2016-07-19 643905 ENSG00000221961 OTTHUMG00000159174 uc010zod.3 AF453950 NM_001080835 RGD:9102085 PRR21 +HGNC:28354 PRR22 proline rich 22 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC24975 2009-07-15 2015-08-25 163154 ENSG00000212123 OTTHUMG00000180553 uc010xiv.1 BC023278 NM_153359 CCDS45933 Q8IZ63 12477932 MGI:2685392 RGD:1595447 PRR22 +HGNC:37172 PRR23A proline rich 23A protein-coding gene gene with protein product Approved 3q22.3 03q22.3 2009-08-21 2014-06-03 729627 ENSG00000206260 uc011bms.3 NM_001134659 CCDS46923 A6NEV1 "MGI:3588253|MGI:1919229|MGI:3645937|MGI:3645743" RGD:1591417 PRR23A +HGNC:33764 PRR23B proline rich 23B protein-coding gene gene with protein product Approved 3q23 03q23 FLJ46116 2009-08-21 2016-10-05 389151 ENSG00000184814 OTTHUMG00000160633 uc003esy.1 BC137146 NM_001013650 CCDS33868 Q6ZRT6 "MGI:3588253|MGI:1919229|MGI:3645937|MGI:3645743" PRR23B +HGNC:37173 PRR23C proline rich 23C protein-coding gene gene with protein product Approved 3q22.3 03q22.3 FLJ46210 2009-08-21 2014-06-03 389152 ENSG00000233701 OTTHUMG00000160634 uc011bmt.1 NM_001134657 CCDS46924 Q6ZRP0 "MGI:3588253|MGI:1919229|MGI:3645937|MGI:3645743" PRR23C +HGNC:49420 PRR23D1 proline rich 23 domain containing 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 2013-11-07 2013-11-07 100131608 ENSG00000255251 OTTHUMG00000165386 XM_011534716 CCDS64820 E9PI22 +HGNC:49396 PRR23D2 proline rich 23 domain containing 2 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 2013-11-07 2013-11-07 100133251 ENSG00000255378 OTTHUMG00000165398 XM_011543811 CCDS64821 P0DMB1 RGD:1591431 +HGNC:37230 PRR25 proline rich 25 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 gs64 2009-09-11 2009-09-11 388199 ENSG00000167945 OTTHUMG00000178117 uc010uut.2 BC156145 NM_001013638 CCDS45372 Q96S07 11157797 PRR25 +HGNC:30724 PRR26 proline rich 26 other unknown Approved 10p15.3 10p15.3 FLJ38681 C10orf108 chromosome 10 open reading frame 108 2004-05-27 2012-12-03 2012-12-03 2014-10-07 414235 ENSG00000180525 OTTHUMG00000017529 uc057rea.1 AK096000 NR_027151 Q8N8Z3 +HGNC:33193 PRR27 proline rich 27 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 C4orf40 chromosome 4 open reading frame 40 2007-08-15 2014-02-19 2014-02-19 2014-11-19 401137 ENSG00000187533 OTTHUMG00000129402 BX640924 NM_214711 CCDS3535 Q6MZM9 MGI:1921029 RGD:1310384 +HGNC:25673 PRR29 proline rich 29 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "FLJ11724|DKFZp761M2312" C17orf72 chromosome 17 open reading frame 72 2006-01-04 2014-04-11 2014-04-11 2014-04-11 92340 ENSG00000224383 OTTHUMG00000178594 AL161972 NM_001191029 "CCDS54157|CCDS54158|CCDS54159|CCDS58586" P0C7W0 12477932 MGI:1922823 RGD:1307288 +HGNC:51822 PRR29-AS1 PRR29 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q23.3 17q23.3 2015-06-19 2015-06-19 400612 ENSG00000264954 OTTHUMG00000178593 AK094767 NR_126169 +HGNC:28677 PRR30 proline rich 30 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 MGC44505 C2orf53 chromosome 2 open reading frame 53 2006-11-03 2014-04-11 2014-04-11 2015-08-25 339779 ENSG00000186143 OTTHUMG00000128408 BC045671 NM_178553 CCDS1739 Q53SZ7 12477932 MGI:1923877 RGD:2315526 +HGNC:18147 PRR31 proline rich 31 other unknown Approved 9q34.3 09q34.3 C9orf141 chromosome 9 open reading frame 141 2007-08-02 2014-04-11 2014-04-11 2014-11-19 101928638 ENSG00000198454 OTTHUMG00000020969 XM_011519282 Q5SQ13 +HGNC:34498 PRR32 proline rich 32 protein-coding gene gene with protein product Approved Xq25 Xq25 CXorf64 chromosome X open reading frame 64 2008-08-06 2014-04-11 2014-04-11 2014-04-11 100130613 ENSG00000183631 OTTHUMG00000022355 NM_001122716 CCDS48163 B1ATL7 21375368 MGI:1916050 RGD:1583341 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf64 +HGNC:35118 PRR33 proline rich 33 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 LOC728008 C11orf89 chromosome 11 open reading frame 89 2008-09-16 2014-04-11 2014-04-11 2015-08-25 102724536 ENSG00000184682 OTTHUMG00000134331 A8MZF0 MGI:3642289 RGD:1592568 +HGNC:25606 PRR34 proline rich 34 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 FLJ10945 C22orf26 chromosome 22 open reading frame 26 2006-06-26 2014-04-11 2014-04-11 2014-11-18 55267 ENSG00000182257 OTTHUMG00000150407 AK096201 NM_018280 CCDS14071 Q9NV39 RGD:9382417 +HGNC:50499 PRR34-AS1 PRR34 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 2014-06-13 2014-06-13 150381 ENSG00000241990 OTTHUMG00000150198 NR_027034 +HGNC:14139 PRR35 proline rich 35 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 C16orf11 chromosome 16 open reading frame 11 2000-12-21 2014-04-11 2014-04-11 2015-09-07 146325 ENSG00000161992 OTTHUMG00000154104 NM_145270 CCDS45365 P0CG20 MGI:2442713 RGD:1598335 +HGNC:26172 PRR36 proline rich 36 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 2014-10-16 2015-09-07 80164 ENSG00000183248 OTTHUMG00000182504 NM_001190467 CCDS74276 Q9H6K5 MGI:3605626 RGD:1566084 +HGNC:28164 PRRC1 proline rich coiled-coil 1 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 FLJ32875 proline-rich coiled-coil 1 2006-08-18 2016-01-25 2016-01-25 133619 ENSG00000164244 OTTHUMG00000128982 uc003kuk.5 AJ515429 NM_130809 "CCDS4143|CCDS68943" Q96M27 15541471 MGI:1916106 RGD:1565632 PRRC1 +HGNC:13918 PRRC2A proline rich coiled-coil 2A protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G2|D6S51E" BAT2 "HLA-B associated transcript 2|proline-rich coiled-coil 2A" 2001-07-13 2010-12-09 2016-01-25 2016-10-05 7916 ENSG00000204469 OTTHUMG00000031168 uc003nvb.5 M31293 NM_080686 CCDS4708 P48634 "2156268|8499947" MGI:1915467 RGD:1303025 PRRC2A 142580 +HGNC:28121 PRRC2B proline rich coiled-coil 2B protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "MGC10526|LQFBS-1" "KIAA0515|BAT2L|BAT2L1" "KIAA0515|HLA-B associated transcript 2-like|HLA-B associated transcript 2-like 1|proline-rich coiled-coil 2B" 2004-01-27 2010-12-09 2016-01-25 2016-01-25 84726 ENSG00000130723 OTTHUMG00000020827 uc004cam.2 AB011087 NM_013318 CCDS48044 Q5JSZ5 9628581 MGI:1923304 RGD:1595906 PRRC2B +HGNC:24903 PRRC2C proline rich coiled-coil 2C protein-coding gene gene with protein product Approved 1q24.3 01q24.3 "KIAA1096|XTP2" "BAT2D1|BAT2L2" "BAT2 domain containing 1|HLA-B associated transcript 2-like 2|proline-rich coiled-coil 2C" 2005-02-09 2010-12-09 2016-01-25 2016-01-25 23215 ENSG00000117523 OTTHUMG00000034665 uc010pmg.3 AL096857 NM_015172 CCDS1296 Q9Y520 "10470851|12443540" MGI:1913754 RGD:1566064 +HGNC:23949 PRRC2CP1 proline rich coiled-coil 2C pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 BAT2D1P1 "HBxAg transactivated protein 2 pseudogene|BAT2 domain containing 1 pseudogene 1" BAT2L2P1 "HLA-B associated transcript 2-like 2 pseudogene 1|proline-rich coiled-coil 2C pseudogene 1" 2009-12-17 2010-12-09 2016-01-25 2016-01-25 360018 ENSG00000216777 OTTHUMG00000036160 NG_002936 12815422 PGOHUM00000233665 +HGNC:9469 PRRG1 proline rich and Gla domain 1 protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 PRGP1 proline-rich Gla (G-carboxyglutamic acid) polypeptide 1 Proline rich and Gla domain containing 1249 1997-10-16 2016-04-27 2016-04-27 5638 ENSG00000130962 OTTHUMG00000021360 uc004ddo.3 AF009242 NM_000950 "CCDS14239|CCDS55397" O14668 9256434 MGI:1917364 RGD:1561320 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PRRG1 PRRG1 300935 +HGNC:9470 PRRG2 proline rich and Gla domain 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 PRGP2 proline-rich Gla (G-carboxyglutamic acid) polypeptide 2 Proline rich and Gla domain containing 1249 1997-10-16 2016-04-27 2016-04-27 5639 ENSG00000126460 OTTHUMG00000183153 uc002pon.4 NM_000951 CCDS12773 O14669 9256434 MGI:1929596 RGD:1305444 PRRG2 604429 +HGNC:30798 PRRG3 proline rich and Gla domain 3 protein-coding gene gene with protein product Approved Xq28 Xq28 TMG3 proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane) Proline rich and Gla domain containing 1249 2004-09-01 2016-04-27 2016-04-27 79057 ENSG00000130032 OTTHUMG00000024170 uc004few.3 AK074574 NM_024082 CCDS14699 Q9BZD7 11171957 MGI:2685214 RGD:1560309 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PRRG3 PRRG3 300685 +HGNC:30799 PRRG4 proline rich and Gla domain 4 protein-coding gene gene with protein product Approved 11p13 11p13 TMG4 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) Proline rich and Gla domain containing 1249 2004-09-01 2016-04-27 2016-04-27 79056 ENSG00000135378 OTTHUMG00000166219 uc001mtx.4 AF326351 NM_024081 CCDS7881 Q9BZD6 11171957 MGI:2442211 RGD:1560542 PRRG4 611690 +HGNC:13943 PRRT1 proline rich transmembrane protein 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "NG5|IFITMD7" interferon induced transmembrane protein domain containing 7 C6orf31 "chromosome 6 open reading frame 31|proline-rich transmembrane protein 1" Proline rich transmembrane proteins 688 2000-12-05 2005-07-24 2016-01-27 2016-01-27 80863 ENSG00000204314 OTTHUMG00000031144 uc003nzt.4 AK054885 NM_030651 CCDS4739 Q99946 MGI:1932118 RGD:1359348 PRRT1 +HGNC:30500 PRRT2 proline rich transmembrane protein 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "FLJ25513|DKFZp547J199|IFITMD1|FICCA|DSPB3|PKC|EKD1" interferon induced transmembrane protein domain containing 1 "ICCA|DYT10" "infantile convulsions and paroxysmal choreoathetosis|dystonia 10|proline-rich transmembrane protein 2" Proline rich transmembrane proteins 688 2005-11-25 2016-01-27 2016-01-27 112476 ENSG00000167371 OTTHUMG00000177142 uc002due.4 BC011405 NM_145239 "CCDS10654|CCDS58445|CCDS58446" Q7Z6L0 "22101681|22243967" MGI:1916267 RGD:1564195 PRRT2 614386 291703 +HGNC:26591 PRRT3 proline rich transmembrane protein 3 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 FLJ33674 proline-rich transmembrane protein 3 Proline rich transmembrane proteins 688 2005-12-19 2016-01-27 2016-01-27 285368 ENSG00000163704 OTTHUMG00000155285 uc003bul.2 AK090993 NM_207351 "CCDS43049|CCDS82732" Q5FWE3 MGI:2444810 RGD:1562419 PRRT3 +HGNC:41151 PRRT3-AS1 PRRT3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 PRRT3 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874032 ENSG00000230082 OTTHUMG00000155293 uc031ryi.1 NR_046734 +HGNC:37280 PRRT4 proline rich transmembrane protein 4 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 proline-rich transmembrane protein 4 Proline rich transmembrane proteins 688 2009-09-22 2016-01-27 2016-04-25 401399 ENSG00000224940 OTTHUMG00000157714 uc022aky.2 BC063892 NM_001114726 "CCDS47698|CCDS55160" C9JH25 MGI:2141677 RGD:1559885 PRRT4 +HGNC:9142 PRRX1 paired related homeobox 1 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 PHOX1 PMX1 paired mesoderm homeo box 1 PRD class homeoboxes and pseudogenes 521 1994-03-21 2003-11-14 2003-11-12 2016-10-05 5396 ENSG00000116132 OTTHUMG00000035231 uc001ghf.4 M95929 NM_006902 "CCDS1290|CCDS1291" P54821 1509260 MGI:97712 RGD:628884 PRRX1 167420 8549 270071 +HGNC:21338 PRRX2 paired related homeobox 2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "PRX2|PMX2" PRD class homeoboxes and pseudogenes 521 2003-11-13 2015-09-07 51450 ENSG00000167157 OTTHUMG00000020790 uc004byh.4 AF061970 NM_016307 CCDS6926 Q99811 11063257 MGI:98218 RGD:1311471 PRRX2 604675 8506 +HGNC:50684 PRRX2-AS1 PRRX2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.11 09q34.11 2014-06-05 2014-06-05 101929437 ENSG00000236024 OTTHUMG00000020789 NR_132102 +HGNC:9471 PRS Prieto X-linked mental retardation syndrome phenotype phenotype only Approved Xp21-p11 Xp21-p11 MRXS2 X-linked mental retardation 103 1991-09-10 1993-01-19 5640 "1673297|1605216" 309610 +HGNC:9474 PRSM2 protease, metallo, 2 other unknown Approved reserved reserved 1996-05-14 2013-04-02 5643 +HGNC:9475 PRSS1 protease, serine 1 protein-coding gene gene with protein product Approved 7q34 07q34 TRY1 trypsin 1 Proteases, serine 738 2001-06-22 2015-11-16 2016-10-12 5644 ENSG00000204983 OTTHUMG00000158923 uc003wak.3 M22612 NM_002769 CCDS5872 P07477 MGI:3687012 LRG_1013|http://www.lrg-sequence.org/LRG/LRG_1013 PRSS1 276000 118080 S01.127 objectId:2397 3.4.21.4 +HGNC:9483 PRSS2 protease, serine 2 protein-coding gene gene with protein product Approved 7q34 07q34 TRY2 trypsin 2 Proteases, serine 738 1995-02-24 2015-11-16 2016-07-26 5645 ENSG00000275896 OTTHUMG00000158904 uc284qbb.1 M27602 NM_002770 "CCDS83235|CCDS83236" P07478 3011602 MGI:102759 RGD:3417 PRSS2 601564 139106 S01.258 objectId:2398 3.4.21.4 +HGNC:9486 PRSS3 protease, serine 3 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "TRY3|TRY4" mesotrypsin PRSS4 "protease, serine, 4 (trypsin 4, brain)|protease, serine, 3 (mesotrypsin)" Proteases, serine 738 1995-02-24 2015-11-16 2016-10-05 5646 ENSG00000010438 OTTHUMG00000019798 uc003ztl.5 NM_002771 "CCDS6545|CCDS47958|CCDS56570|CCDS56571" P35030 "2326201|8294000" "MGI:102756|MGI:102757" RGD:1311446 PRSS3 613578 S01.174 objectId:2399 3.4.21.4 +HGNC:43787 PRSS3P1 protease, serine 3 pseudogene 1 pseudogene pseudogene Approved 7q34 07q34 TRY5 2012-03-06 2015-11-16 2015-11-16 168330 ENSG00000250591 OTTHUMG00000158914 NG_001333 PGOHUM00000306137 +HGNC:43788 PRSS3P2 protease, serine 3 pseudogene 2 pseudogene pseudogene Approved 7q34 alternate reference locus 07q34 alternate reference locus TRY6 trypsinogen C 2012-03-06 2015-11-16 2015-11-16 154754 NR_001296 Q8NHM4 PGOHUM00000260385 +HGNC:43790 PRSS3P3 protease, serine 3 pseudogene 3 pseudogene pseudogene Approved 7q34 07q34 TRY3 2012-03-06 2015-11-16 2015-11-16 136540 ENSG00000277083 OTTHUMG00000158568 NG_001333 PGOHUM00000302456 +HGNC:43789 PRSS3P4 protease, serine 3 pseudogene 4 pseudogene pseudogene Approved 9p13.3 09p13.3 protease, serine, 3 pseudogene 4 2012-03-06 2015-11-16 2015-11-16 106480774 ENSG00000204982 OTTHUMG00000000408 NG_045658 PGOHUM00000303776 +HGNC:9491 PRSS8 protease, serine 8 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 prostasin Proteases, serine 738 1995-10-17 2015-11-16 2015-11-16 5652 ENSG00000052344 OTTHUMG00000176750 uc002ebc.5 U33446 NM_002773 CCDS45469 Q16651 "8838796|7768952" MGI:1923810 RGD:619973 PRSS8 600823 S01.159 objectId:2400 +HGNC:9477 PRSS12 protease, serine 12 protein-coding gene gene with protein product Approved 4q26 04q26 "BSSP-3|MRT1" "neurotrypsin|motopsin" Proteases, serine 738 1998-10-02 2015-11-16 2016-10-05 8492 ENSG00000164099 OTTHUMG00000161166 uc003ica.3 AJ001531 XM_011532387 CCDS3709 P56730 "9540828|9245503" MGI:1100881 RGD:69238 PRSS12 606709 118083 S01.237 +HGNC:9480 PRSS16 protease, serine 16 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 TSSP thymus-specific serine protease Proteases, serine 738 1999-12-10 2015-11-16 2016-10-05 10279 ENSG00000112812 OTTHUMG00000016167 uc003nja.4 AF052514 XM_017010161 CCDS4623 Q9NQE7 10527559 MGI:1859181 RGD:1306652 PRSS16 607169 S28.003 +HGNC:9485 PRSS21 protease, serine 21 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "ESP-1|TEST1" testisin Proteases, serine 738 1999-12-17 2015-11-16 2015-11-16 10942 ENSG00000007038 OTTHUMG00000128931 uc002crt.5 AF058300 NM_006799 "CCDS10478|CCDS45388" Q9Y6M0 "10397266|9826525" MGI:1916698 RGD:727870 PRSS21 608159 S01.011 +HGNC:14368 PRSS22 protease, serine 22 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "hBSSP-4|BSSP-4|SP001LA" brain-specific serine protease 4 Proteases, serine 738 2001-09-26 2015-11-16 2015-11-16 64063 ENSG00000005001 OTTHUMG00000128961 uc002cry.1 AF321182 NM_022119 CCDS10481 Q9GZN4 "11602603|15701722" MGI:1918085 RGD:1310880 PRSS22 609343 S01.252 +HGNC:14370 PRSS23 protease, serine 23 protein-coding gene gene with protein product Approved 11q14.2 11q14.2 "SPUVE|SIG13" Proteases, serine 738 2004-07-09 2015-11-16 2015-11-16 11098 ENSG00000150687 OTTHUMG00000167226 uc001pcb.4 AF015287 NM_007173 CCDS8278 O95084 MGI:1923703 RGD:1359545 PRSS23 S01.309 +HGNC:15475 PRSS27 protease, serine 27 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "MPN|CAPH2" "pancreasin|marapsin" Proteases, serine 738 2001-05-10 2015-11-16 83886 ENSG00000172382 OTTHUMG00000128929 uc002crf.4 AB056161 NM_031948 CCDS10476 Q9BQR3 MGI:2450123 RGD:1303256 PRSS27 608018 S01.074 +HGNC:17542 PRSS29P protease, serine 29, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 Isp2 Proteases, serine 738 2004-07-09 2015-11-16 2015-11-16 123787 ENSG00000196364 OTTHUMG00000172997 AF529082 NG_002329 A6NIE9 MGI:2149952 RGD:1305856 PGOHUM00000293388 +HGNC:28753 PRSS30P protease, serine, 30 pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 "Disp|MGC5228" "TMPRSS8|TMPRSS8P" "transmembrane protease, serine 8 homolog (mouse), pseudogene|protease, serine, 30 homolog (mouse), pseudogene" Proteases, serine 738 2009-06-05 2010-04-21 2015-11-16 2016-10-05 124221 ENSG00000172460 OTTHUMG00000128963 NM_178453 12477932 MGI:1353645 S01.969 +HGNC:30405 PRSS33 protease, serine 33 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 EOS Proteases, serine 738 2004-07-09 2015-11-16 2015-11-16 260429 ENSG00000103355 OTTHUMG00000177360 uc032don.1 AF536382 NM_152891 CCDS42110 Q8NF86 12795636 MGI:2661234 RGD:1583742 PRSS33 613797 S01.075 +HGNC:21387 PRSS35 protease, serine 35 protein-coding gene gene with protein product Approved 6q14.2 06q14.2 "MGC46520|dJ223E3.1" C6orf158 chromosome 6 open reading frame 158 Proteases, serine 738 2003-06-11 2004-07-09 2015-11-16 2015-11-16 167681 ENSG00000146250 OTTHUMG00000015113 uc003pjz.4 BC037170 NM_153362 CCDS4999 Q8N3Z0 MGI:2444800 RGD:1311282 PRSS35 S01.994 +HGNC:26906 PRSS36 protease, serine 36 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ90661 polyserase 2 protease, serine, 36 Proteases, serine 738 2005-03-01 2015-11-16 2015-11-16 146547 ENSG00000178226 OTTHUMG00000176751 uc002ebd.5 AK075142 NM_173502 "CCDS32436|CCDS58452|CCDS58453" Q5K4E3 15536082 MGI:1924863 RGD:1593186 PRSS36 610560 XS01-002 +HGNC:29211 PRSS37 protease, serine 37 protein-coding gene gene with protein product Approved 7q34 07q34 Proteases, serine 738 2009-09-22 2015-11-16 2015-11-16 136242 ENSG00000165076 OTTHUMG00000157174 uc064irq.1 NM_001008270 CCDS34764 A4D1T9 MGI:1914940 RGD:1311823 PRSS37 +HGNC:29625 PRSS38 protease, serine 38 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 MPN2 marapsin 2 Proteases, serine 738 2009-09-22 2015-11-16 2015-11-16 339501 ENSG00000185888 OTTHUMG00000037701 uc001hrh.4 NM_183062 CCDS1563 A1L453 12838346 MGI:2685095 RGD:1565729 PRSS38 +HGNC:30715 PRSS41 protease, serine 41 other unknown Approved 16p13.3 16p13.3 TESSP1 testis serine protease 1 Proteases, serine 738 2010-04-08 2015-11-16 2015-11-16 360226 ENSG00000215148 OTTHUMG00000128932 NM_183379 Q7RTY9 12838346 MGI:1918253 RGD:1584711 S01.327 +HGNC:30716 PRSS42 protease, serine 42 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 TESSP2 testis serine protease 2 Proteases, serine 738 2009-11-06 2015-11-16 2015-11-16 339906 ENSG00000178055 OTTHUMG00000156496 uc011bap.2 NM_182702 CCDS46816 Q7Z5A4 12838346 MGI:2665280 RGD:1562548 PRSS42 +HGNC:37323 PRSS43 protease, serine 43 other unknown Approved 3p21.31 03p21.31 TESSP3 Proteases, serine 738 2010-02-23 2012-10-25 2015-11-16 2015-11-16 100288960 XM_002342351 MGI:2684822 S01.487 +HGNC:37324 PRSS44 protease, serine 44 other unknown Approved 3p21.31 03p21.31 TESSP4 Proteases, serine 738 2010-02-23 2015-11-16 2015-11-16 729756 ENSG00000226074 OTTHUMG00000154622 XM_001131213 E7EML9 MGI:1920586 RGD:1560940 S01.934 +HGNC:30717 PRSS45 protease, serine 45 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 TESSP5 testis serine protease 5 Proteases, serine 738 2009-11-06 2015-11-16 2015-11-16 377047 ENSG00000188086 OTTHUMG00000133480 uc062jau.1 NM_199183 CCDS46815 Q7RTY3 12838346 MGI:3605764 RGD:1303021 PRSS45 +HGNC:37325 PRSS46 protease, serine 46 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 TESSP6 Proteases, serine 738 2010-02-23 2015-11-16 2015-11-16 100287362 ENSG00000261603 OTTHUMG00000177121 uc021wxf.2 XM_002342331 CCDS54576 E5RG02 MGI:1921556 RGD:1302970 +HGNC:37326 PRSS47 protease, serine 47 other unknown Approved 9q22.31 09q22.31 Proteases, serine 738 2010-04-08 2015-11-16 2015-11-16 138652 XR_078416 A8MTI9 MGI:2685120 +HGNC:24635 PRSS48 protease, serine 48 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 ESSPL Proteases, serine 738 2009-11-06 2015-11-16 2015-11-16 345062 ENSG00000189099 OTTHUMG00000161673 uc011cif.3 BN000134 NM_183375 CCDS47145 Q7RTY5 12838346 MGI:2685865 RGD:1592020 PRSS48 +HGNC:17910 PRSS50 protease, serine 50 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "TSP50|CT20" "cancer/testis antigen 20|testes specific protease 50" Proteases, serine 738 2009-11-06 2015-11-16 2015-11-16 29122 ENSG00000206549 OTTHUMG00000164067 uc021wxe.4 AF100707 NM_013270 CCDS2745 Q9UI38 10397268 MGI:2447303 RGD:6499372 PRSS50 607950 +HGNC:37321 PRSS51 protease, serine 51 other unknown Approved 8p23.1 08p23.1 2012-08-24 2015-11-16 2015-11-16 346702 ENSG00000253649 OTTHUMG00000163805 uc010lru.3 MGI:1921465 RGD:6498506 +HGNC:37322 PRSS52P protease, serine 52, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2012-08-24 2015-11-16 2015-11-16 100419209 NG_025997 MGI:1920632 PGOHUM00000249227 +HGNC:34407 PRSS53 protease, serine 53 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 POL3S polyserase 3 Proteases, serine 738 2010-04-13 2015-11-16 2015-11-16 339105 ENSG00000151006 OTTHUMG00000047358 uc002eaq.4 NM_001081268 CCDS42153 Q2L4Q9 16566820 MGI:2652890 RGD:1566127 PRSS53 610561 +HGNC:26336 PRSS54 protease, serine 54 protein-coding gene gene with protein product Approved 16q21 16q21 "FLJ25339|KLKBL4|CT67" cancer/testis antigen 67 Proteases, serine 738 2010-04-14 2015-11-16 2015-11-16 221191 ENSG00000103023 OTTHUMG00000173231 uc002enf.3 AK058068 NM_001080492 "CCDS32463|CCDS76882" Q6PEW0 17521433 MGI:1918243 RGD:1307877 PRSS54 +HGNC:30824 PRSS55 protease, serine 55 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "T-SP1|UNQ9391|CT153" Proteases, serine 738 2010-04-14 2015-11-16 2015-11-16 203074 ENSG00000184647 OTTHUMG00000129345 uc003wta.4 AY358867 NM_198464 "CCDS5976|CCDS56523" Q6UWB4 "12975309|18844450" MGI:1918287 RGD:1586875 PRSS55 615144 +HGNC:39433 PRSS56 protease, serine 56 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 Proteases, serine 738 2011-03-15 2015-11-16 2015-11-16 646960 ENSG00000237412 OTTHUMG00000153326 uc021vyh.2 NM_001195129 CCDS74669 P0CW18 "21397065|21532570" MGI:1916703 RGD:1563955 613858 265147 S01.514 +HGNC:31397 PRSS57 protease, serine 57 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 UNQ782 PRSSL1 protease, serine-like 1 Proteases, serine 738 2004-06-16 2011-03-07 2015-11-16 2016-07-25 400668 ENSG00000185198 OTTHUMG00000180662 uc002lpl.2 AY358594 NM_214710 "CCDS12041|CCDS77203" Q6UWY2 12975309 MGI:1920356 RGD:1303330 PRSS57 S01.319 +HGNC:39125 PRSS58 protease, serine 58 protein-coding gene gene with protein product Approved 7q34 07q34 TRYX3 trypsin X3 Proteases, serine 738 2011-03-10 2015-11-16 2015-11-16 136541 ENSG00000258223 OTTHUMG00000158565 uc003vxc.5 NM_001001317 CCDS5871 Q8IYP2 MGI:3608323 RGD:1303054 PRSS58 3.4.21.4 +HGNC:23333 PRTFDC1 phosphoribosyl transferase domain containing 1 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 HHGP 2003-11-10 2016-10-05 56952 ENSG00000099256 OTTHUMG00000017829 uc001ise.3 AF226056 NM_020200 "CCDS7145|CCDS60506" Q9NRG1 RGD:1310177 PRTFDC1 610751 +HGNC:26373 PRTG protogenin protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "FLJ25756|IGDCC5" immunoglobulin superfamily, DCC subclass, member 5 protogenin homolog (Gallus gallus) "Fibronectin type III domain containing|I-set domain containing" "555|593" 2005-11-11 2010-06-24 2015-09-07 283659 ENSG00000166450 OTTHUMG00000172591 uc002adg.4 AK098622 NM_173814 CCDS42040 Q2VWP7 MGI:2444710 RGD:1307157 PRTG 613261 +HGNC:9495 PRTN3 proteinase 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PR-3|ACPA|C-ANCA|AGP7|MBT|P29" "myeloblastin|serine proteinase, neutrophil|Wegener granulomatosis autoantigen" 1992-08-24 2008-07-31 2014-11-19 5657 ENSG00000196415 OTTHUMG00000181838 uc002lqa.2 NM_002777 CCDS32860 P24158 2258701 MGI:893580 RGD:1304898 PRTN3 177020 118087 S01.134 objectId:2401 +HGNC:13420 PRUNE1 prune exopolyphosphatase protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "DRES-17|HTCD37|H-PRUNE" PRUNE prune homolog (Drosophila) 2004-11-16 2016-06-06 2013-04-29 2016-10-05 58497 ENSG00000143363 OTTHUMG00000035062 uc001ewh.2 U67085 NM_021222 "CCDS977|CCDS76211" Q86TP1 "10602478|11687967|18700747" MGI:1925152 RGD:1359521 3.6.1.11 +HGNC:25209 PRUNE2 prune homolog 2 protein-coding gene gene with protein product Approved 9q21.2 09q21.2 "BMCC1|BNIPXL|A214N16.3|bA214N16.3" olfaxin "C9orf65|KIAA0367" "chromosome 9 open reading frame 65|KIAA0367|prune homolog 2 (Drosophila)" BCH domain containing 1299 2004-01-06 2006-11-24 2016-06-06 2016-10-05 158471 ENSG00000106772 OTTHUMG00000020047 uc010mpk.4 BC019095 NM_138818 "CCDS47982|CCDS78407|CCDS83375" Q8WUY3 16288218 MGI:1925004 RGD:1311350 PRUNE2 610691 +HGNC:39723 PRUNEP1 prune exopolyphosphatase pseudogene 1 pseudogene pseudogene Approved 13q12.13 13q12.13 prune homolog (Drosophila) pseudogene 1 2011-03-24 2013-08-28 2013-08-28 100129595 ENSG00000234706 OTTHUMG00000016615 NG_011454 PGOHUM00000248340 +HGNC:13797 PRX periaxin protein-coding gene gene with protein product Approved 19q13.2 19q13.2 KIAA1620 PDZ domain containing 1220 2001-02-15 2016-10-12 57716 ENSG00000105227 OTTHUMG00000182597 uc002ons.4 AB046840 NM_020956 "CCDS12556|CCDS33028" Q9BXM0 "10839370|9143514" MGI:108176 RGD:619960 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_265|http://www.lrg-sequence.org/LRG/LRG_265" PRX 605725 118092 +HGNC:14024 PRY PTPN13-like, Y-linked protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 "PTPN13LY|PRY1" 2001-09-21 2014-11-19 9081 ENSG00000169789 OTTHUMG00000043845 uc004fvh.1 AF000988 NM_004676 CCDS14799 O14603 9381176 PRY 400019 +HGNC:21504 PRY2 PTPN13-like, Y-linked 2 protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 PTPN13LY2 2004-08-25 2014-11-19 442862 ENSG00000169807 OTTHUMG00000043586 uc004fuy.1 NM_001002758 CCDS35482 O14603 15177557 PRY2 400041 +HGNC:34018 PRYP1 PTPN13-like, Y-linked pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 "PRYP7|PRY4P" "PTPN13-like, Y-linked pseudogene 7|PTPN13-like, Y-linked 4, pseudogene" 2008-03-14 2016-10-05 442863 ENSG00000224166 OTTHUMG00000041661 NG_004636 PGOHUM00000233759 +HGNC:34019 PRYP2 PTPN13-like, Y-linked pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 2008-03-14 2016-10-05 442864 ENSG00000231311 OTTHUMG00000041960 NG_004636 PGOHUM00000233984 +HGNC:34020 PRYP3 PTPN13-like, Y-linked pseudogene 3 pseudogene pseudogene Approved Yq11.223 Yq11.223 2008-03-14 2014-11-19 442865 ENSG00000169763 OTTHUMG00000044998 NG_004755 O14603 +HGNC:34021 PRYP4 PTPN13-like, Y-linked pseudogene 4 pseudogene pseudogene Approved Yq11.23 Yq11.23 2008-03-14 2016-10-05 442866 ENSG00000172283 OTTHUMG00000045269 NG_004755 O14603 +HGNC:38785 PRYP5 PTPN13-like, Y-linked pseudogene 5 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2010-08-03 2014-11-19 106478933 ENSG00000233546 OTTHUMG00000041977 NG_043604 PGOHUM00000233992 +HGNC:38786 PRYP6 PTPN13-like, Y-linked pseudogene 6 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2010-08-03 2014-11-19 106480721 ENSG00000248573 OTTHUMG00000041959 NG_045496 PGOHUM00000233780 +HGNC:9498 PSAP prosaposin protein-coding gene gene with protein product Approved 10q22.1 10q22.1 variant Gaucher disease and variant metachromatic leukodystrophy "SAP1|GLBA" sphingolipid activator protein-1 Endogenous ligands 542 1986-01-01 2008-07-31 2016-10-05 5660 ENSG00000197746 OTTHUMG00000018429 uc001jsm.5 BC004275 NM_002778 CCDS7311 P07602 2717620 MGI:97783 RGD:3423 PSAP 176801 118095 +HGNC:33131 PSAPL1 prosaposin-like 1 (gene/pseudogene) protein-coding gene gene with protein product Approved 4p16.1 04p16.1 prosaposin-like 1 2006-09-18 2010-03-12 2010-03-12 768239 ENSG00000178597 OTTHUMG00000160006 uc011bwj.3 DQ991252 NM_001085382 CCDS47009 Q6NUJ1 MGI:1924193 RGD:1307368 PSAPL1 +HGNC:19129 PSAT1 phosphoserine aminotransferase 1 protein-coding gene gene with protein product Approved 9q21.2 09q21.2 PSA 2003-05-19 2014-11-19 29968 ENSG00000135069 OTTHUMG00000020066 uc004ala.5 BC004863 NM_021154 "CCDS6659|CCDS6660" Q9Y617 "12633500|3651428" MGI:2183441 RGD:735170 PSAT1 610936 159912 +HGNC:15785 PSAT1P1 phosphoserine aminotransferase 1 pseudogene 1 pseudogene pseudogene Approved 8q11.21 08q11.21 similar to phosphoserine aminotransferase isoform 1 C8orf62 chromosome 8 open reading frame 62 2005-09-22 2010-06-03 2010-06-03 2014-11-19 137133 ENSG00000253810 OTTHUMG00000164212 NG_009632 PGOHUM00000260401 +HGNC:43988 PSAT1P2 phosphoserine aminotransferase 1 pseudogene 2 pseudogene pseudogene Approved 2p15 02p15 2012-05-23 2014-11-19 107133519 ENSG00000232144 OTTHUMG00000152522 NG_046678 PGOHUM00000240063 +HGNC:43989 PSAT1P3 phosphoserine aminotransferase 1 pseudogene 3 pseudogene pseudogene Approved 1p31.1 01p31.1 2012-05-23 2014-11-19 729779 ENSG00000230787 OTTHUMG00000009740 NG_022726 PGOHUM00000244078 +HGNC:43990 PSAT1P4 phosphoserine aminotransferase 1 pseudogene 4 pseudogene pseudogene Approved 3q26.1 03q26.1 2012-05-23 2014-11-19 100287630 ENSG00000224962 OTTHUMG00000158210 NG_022280 PGOHUM00000238254 +HGNC:9499 PSBP1 prostatic steroid binding protein 1 other unknown Approved reserved reserved prostatic steroid-binding protein 1 1995-12-13 2001-11-28 2013-04-02 5661 +HGNC:9500 PSCA prostate stem cell antigen protein-coding gene gene with protein product Approved 8q24.2 08q24.2 LY6/PLAUR domain containing 1226 1999-08-25 2016-04-25 8000 ENSG00000167653 OTTHUMG00000162077 uc003ywu.4 AF043498 NM_005672 CCDS47925 O43653 9465086 MGI:1919623 RGD:1594221 PSCA 602470 +HGNC:9507 PSD pleckstrin and Sec7 domain containing protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "KIAA2011|TYL|PSD1|EFA6A|EFA6" pleckstrin and Sec7 domain protein Pleckstrin homology domain containing 682 1997-08-18 2004-04-28 2016-10-05 5662 ENSG00000059915 OTTHUMG00000018954 uc009xxd.2 X99688 XM_011539969 "CCDS31272|CCDS73187" A5PKW4 9417912 MGI:1920978 RGD:620297 PSD 602327 +HGNC:19092 PSD2 pleckstrin and Sec7 domain containing 2 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "DKFZp761B0514|EFA6C" Pleckstrin homology domain containing 682 2004-07-02 2016-10-05 84249 ENSG00000146005 OTTHUMG00000129240 uc003leu.2 AL136559 NM_032289 CCDS4216 Q9BQI7 MGI:1921252 RGD:1311075 PSD2 +HGNC:19093 PSD3 pleckstrin and Sec7 domain containing 3 protein-coding gene gene with protein product Approved 8p22 08p22 "KIAA0942|HCA67|EFA6R|DKFZp761K1423|EFA6D" Pleckstrin homology domain containing 682 2004-07-06 2016-10-05 23362 ENSG00000156011 OTTHUMG00000163711 uc003wyy.4 AF243495 NM_015310 "CCDS34854|CCDS43720" Q9NYI0 MGI:1918215 RGD:1559968 PSD3 614440 +HGNC:19096 PSD4 pleckstrin and Sec7 domain containing 4 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "TIC|EFA6B" Pleckstrin homology domain containing 682 2004-07-02 2016-10-05 23550 ENSG00000125637 OTTHUMG00000153339 uc002tjc.4 U63127 NM_012455 CCDS33276 Q8NDX1 12082148 MGI:2674093 RGD:1310289 PSD4 614442 +HGNC:9508 PSEN1 presenilin 1 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 "FAD|S182|PS1" AD3 Alzheimer disease 3 1992-11-05 2008-07-28 2016-10-12 5663 ENSG00000080815 OTTHUMG00000141279 uc001xnr.4 AJ008005 NM_000021 "CCDS9812|CCDS9813" P49768 1411576 MGI:1202717 RGD:3425 "Alzheimer Disease & Frontotemporal Dementia Mutation Database|http://www.molgen.ua.ac.be/ADMutations/|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_224|http://www.lrg-sequence.org/LRG/LRG_224" PSEN1 104311 118099 A22.001 objectId:2402 +HGNC:9509 PSEN2 presenilin 2 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "AD3L|STM2|PS2" AD4 Alzheimer disease 4 1995-08-30 2014-02-24 2016-10-12 5664 ENSG00000143801 OTTHUMG00000037563 uc009xeo.2 BC006365 NM_000447 "CCDS1556|CCDS44324" P49810 7638621 MGI:109284 RGD:621060 "Alzheimer Disease & Frontotemporal Dementia Mutation Database|http://www.molgen.ua.ac.be/ADMutations/|LRG_225|http://www.lrg-sequence.org/LRG/LRG_225" PSEN2 600759 118105 A22.002 objectId:2403 +HGNC:30100 PSENEN presenilin enhancer gamma-secretase subunit protein-coding gene gene with protein product Approved 19q13.12 19q13.12 PEN2 presenilin enhancer 2 homolog (C. elegans) 2005-02-08 2016-05-16 2016-10-12 55851 ENSG00000205155 OTTHUMG00000182067 uc002obi.3 AF220053 NM_172341 CCDS12474 Q9NZ42 "12110170|12660785" MGI:1913590 RGD:1312037 LRG_222|http://www.lrg-sequence.org/LRG/LRG_222 PSENEN 607632 268351 +HGNC:9510 PSF1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9511 PSF2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9512 PSF3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9513 PSF4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9514 PSG1 pregnancy specific beta-1-glycoprotein 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "PSGGA|CD66f|PBG1" PSBG1 "CD molecules|V-set domain containing|Pregnancy specific glycoproteins" "471|590|1315" 1989-06-30 2015-09-07 5669 ENSG00000231924 OTTHUMG00000151123 uc002ovd.1 XM_017026994 "CCDS12612|CCDS54275|CCDS59392|CCDS74380|CCDS82360" P11464 PSG1 176390 CD66f +HGNC:9519 PSG2 pregnancy specific beta-1-glycoprotein 2 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "PSGGB|PSG1|CEA" "pregnancy-specific beta-1 glycoprotein|pregnancy-specific beta-1-glycoprotein 7|carcinoembryonic antigen SG8" PSBG2 "V-set domain containing|Pregnancy specific glycoproteins" "590|1315" 1991-06-06 2016-10-05 5670 ENSG00000242221 OTTHUMG00000151547 uc002ovr.4 NM_031246 CCDS12616 P11465 2377620 PSG2 176391 +HGNC:9520 PSG3 pregnancy specific beta-1-glycoprotein 3 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "V-set domain containing|Pregnancy specific glycoproteins" "590|1315" 1991-09-13 2015-09-07 5671 ENSG00000221826 OTTHUMG00000151120 uc002oue.4 NM_021016 CCDS12611 Q16557 2341148 PSG3 176392 +HGNC:9521 PSG4 pregnancy specific beta-1-glycoprotein 4 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 pregnancy-specific beta-1-glycoprotein 4 "V-set domain containing|Pregnancy specific glycoproteins" "590|1315" 1991-09-13 2016-10-05 5672 ENSG00000243137 OTTHUMG00000151544 uc002ovy.4 NM_213633 "CCDS33039|CCDS46093|CCDS62695" Q00888 2783133 PSG4 176393 +HGNC:9522 PSG5 pregnancy specific beta-1-glycoprotein 5 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "FL-NCA-3|PSG" "pregnancy-specific beta-1 glycoprotein|pregnancy-specific beta 1 glycoprotein" "V-set domain containing|Pregnancy specific glycoproteins" "590|1315" 1991-09-13 2016-10-05 5673 ENSG00000204941 OTTHUMG00000151539 uc060zka.1 NM_002781 CCDS12617 Q15238 2735907 PSG5 176394 +HGNC:9523 PSG6 pregnancy specific beta-1-glycoprotein 6 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "V-set domain containing|Pregnancy specific glycoproteins" "590|1315" 1991-10-16 2016-10-05 5675 ENSG00000170848 OTTHUMG00000151127 uc060zix.1 NM_002782 "CCDS12613|CCDS33038" Q00889 1690992 PSG6 176395 +HGNC:9524 PSG7 pregnancy specific beta-1-glycoprotein 7 (gene/pseudogene) protein-coding gene gene with protein product Approved 19q13.31 19q13.31 pregnancy specific beta-1-glycoprotein 7 Pregnancy specific glycoproteins 1315 1991-09-13 2010-02-26 2016-10-05 5676 ENSG00000221878 OTTHUMG00000151125 uc060zja.1 NM_001206650 CCDS77310 Q13046 176396 +HGNC:9525 PSG8 pregnancy specific beta-1-glycoprotein 8 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "V-set domain containing|Pregnancy specific glycoproteins" "590|1315" 1991-09-13 2015-09-07 440533 ENSG00000124467 OTTHUMG00000151118 uc002ouo.2 M74106 XM_011526987 "CCDS33037|CCDS46090|CCDS46091" Q9UQ74 "1672663|1572651" PSG8 176397 +HGNC:9526 PSG9 pregnancy specific beta-1-glycoprotein 9 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 PSGII PSG11 "V-set domain containing|Pregnancy specific glycoproteins" "590|1315" 1991-09-13 2016-10-05 5678 ENSG00000183668 OTTHUMG00000182826 uc002owd.5 M34481 NM_002784 "CCDS12618|CCDS77311|CCDS77312|CCDS77314" Q00887 7806221 PSG9 176398 +HGNC:9515 PSG10P pregnancy specific beta-1-glycoprotein 10, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 "pregnancy specific beta-1-glycoprotein 12|pregnancy specific beta-1-glycoprotein 120" "PSG12|PSG10" pregnancy specific beta-1-glycoprotein 10 Pregnancy specific glycoproteins 1315 1992-04-09 2010-12-20 2010-12-20 2014-11-19 653492 ENSG00000248257 OTTHUMG00000151550 L14724 XR_016855 1572651 176399 +HGNC:9516 PSG11 pregnancy specific beta-1-glycoprotein 11 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 MGC22484 pregnancy specific beta-1-glycoprotein 13 "PSG13|PSG14" "V-set domain containing|Pregnancy specific glycoproteins" "590|1315" 1991-09-13 2016-10-05 5680 ENSG00000243130 OTTHUMG00000151546 uc002ovm.2 U25988 NM_002785 "CCDS12614|CCDS12615" Q9UQ72 7794280 PSG11 176401 +HGNC:9527 PSIP1 PC4 and SFRS1 interacting protein 1 protein-coding gene gene with protein product Approved 9p22.3 09p22.3 "p52|LEDGF|p75" PSIP2 PC4 and SFRS1 interacting protein 2 PWWP domain containing 1147 1999-09-07 2004-02-24 2016-10-05 11168 ENSG00000164985 OTTHUMG00000021021 uc003zlv.6 AF098482 NM_033222 "CCDS6479|CCDS6480|CCDS83348" O75475 "9822615|9885563" MGI:2142116 RGD:631439 PSIP1 603620 +HGNC:31132 PSIP1P1 PC4 and SFRS1 interacting protein 1 pseudogene 1 pseudogene pseudogene Approved 9p22.2 09p22.2 PSIP1P PC4 and SFRS1 interacting protein 1 pseudogene 2004-02-24 2010-02-15 2010-02-15 2010-02-15 353329 AL592293 NG_002792 +HGNC:23968 PSIP1P2 PC4 and SFRS1 interacting protein 1 pseudogene 2 pseudogene pseudogene Approved Yq11 Yq11 2010-02-15 2010-02-15 360022 NG_002938 12815422 +HGNC:9529 PSKH1 protein serine kinase H1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 1993-08-04 2014-11-19 5681 ENSG00000159792 OTTHUMG00000137548 uc002euv.3 M14504 NM_006742 CCDS10851 P11801 8268911 MGI:3528383 RGD:1304648 PSKH1 177015 objectId:2178 +HGNC:18997 PSKH2 protein serine kinase H2 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 2004-06-03 2015-09-07 85481 ENSG00000147613 OTTHUMG00000163638 uc011lfy.3 AY037806 NM_033126 CCDS6240 Q96QS6 PSKH2 objectId:2179 +HGNC:9530 PSMA1 proteasome subunit alpha 1 protein-coding gene gene with protein product Approved 11p15.2 11p15.2 "HC2|NU|PROS30|MGC14542|MGC14575|MGC14751|MGC1667|MGC21459|MGC22853|MGC23915" proteasome (prosome, macropain) subunit, alpha type, 1 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5682 ENSG00000129084 OTTHUMG00000165825 uc001mlk.4 X61969 NM_002786 "CCDS7816|CCDS31431" P25786 "1398136|2025653" MGI:1347005 RGD:61841 PSMA1 602854 T01.976 +HGNC:9531 PSMA2 proteasome subunit alpha 2 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "MU|HC3|PMSA2" proteasome (prosome, macropain) subunit, alpha type, 2 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5683 ENSG00000106588 OTTHUMG00000023916 uc003thy.5 D00760 NM_002787 CCDS5467 P25787 "2025653|1888762" MGI:104885 RGD:61842 PSMA2 176842 T01.972 +HGNC:43832 PSMA2P1 proteasome subunit alpha 2 pseudogene 1 pseudogene pseudogene Approved 11q14.2 11q14.2 proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 1 2012-03-23 2016-04-04 2016-04-04 100130923 ENSG00000254582 OTTHUMG00000167250 NG_021795 PGOHUM00000242400 +HGNC:43833 PSMA2P2 proteasome subunit alpha 2 pseudogene 2 pseudogene pseudogene Approved 8q22.1 08q22.1 proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 2 2012-03-23 2016-04-04 2016-04-04 100131775 ENSG00000251234 OTTHUMG00000160491 NG_022397 PGOHUM00000249431 +HGNC:43834 PSMA2P3 proteasome subunit alpha 2 pseudogene 3 pseudogene pseudogene Approved 2q33.1 02q33.1 PSMA2L proteasome (prosome, macropain) subunit, alpha type, 2 pseudogene 3 2012-03-23 2016-04-04 2016-04-04 79055 ENSG00000227890 OTTHUMG00000154579 NG_032680 PGOHUM00000241073 +HGNC:9532 PSMA3 proteasome subunit alpha 3 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 HC8 proteasome (prosome, macropain) subunit, alpha type, 3 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5684 ENSG00000100567 OTTHUMG00000140319 uc001xdj.3 NM_002788 "CCDS9731|CCDS45113" P25788 "2025653|8811196" MGI:104883 RGD:61844 PSMA3 176843 T01.977 +HGNC:26445 PSMA3-AS1 PSMA3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q23.1 14q23.1 FLJ31306 2014-11-20 2014-11-20 379025 ENSG00000257621 OTTHUMG00000171179 NR_029434 25392693 +HGNC:20029 PSMA3P proteasome subunit alpha 3 pseudogene pseudogene pseudogene Approved 14q23.1 14q23.1 proteasome (prosome, macropain) subunit, alpha type, 3 pseudogene 2003-01-13 2016-04-04 2016-04-04 326617 ENSG00000258563 OTTHUMG00000171126 NG_002607 PGOHUM00000248194 +HGNC:9533 PSMA4 proteasome subunit alpha 4 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "HC9|HsT17706" proteasome (prosome, macropain) subunit, alpha type, 4 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5685 ENSG00000041357 OTTHUMG00000143859 uc002bdu.5 BC005361 NM_002789 "CCDS10303|CCDS45319" P25789 2025653 MGI:1347060 RGD:61846 PSMA4 176846 T01.973 +HGNC:9534 PSMA5 proteasome subunit alpha 5 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 ZETA proteasome (prosome, macropain) subunit, alpha type, 5 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5686 ENSG00000143106 OTTHUMG00000012001 uc001dxn.4 X61970 NM_002790 "CCDS799|CCDS55619" P28066 1888762 MGI:1347009 RGD:61848 PSMA5 176844 T01.975 +HGNC:9535 PSMA6 proteasome subunit alpha 6 protein-coding gene gene with protein product Approved 14q13.2 14q13.2 "IOTA|PROS27|p27K|MGC22756|MGC2333|MGC23846" proteasome (prosome, macropain) subunit, alpha type, 6 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5687 ENSG00000100902 OTTHUMG00000140221 uc010tpt.4 X59417 XM_017021468 "CCDS9655|CCDS61437|CCDS61438" P60900 "1888762|8811196" MGI:1347006 RGD:61849 PSMA6 602855 T01.971 +HGNC:17460 PSMA6P1 proteasome subunit alpha 6 pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 "PSMA6-LIKE|PSMA6Y" PSMA6P "proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene|proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 1" 2003-02-11 2010-05-05 2016-04-04 2016-04-04 64596 ENSG00000215414 OTTHUMG00000036322 AC010877 NG_002321 9847074 PGOHUM00000233960 +HGNC:39607 PSMA6P2 proteasome subunit alpha 6 pseudogene 2 pseudogene pseudogene Approved Xp22.2 Xp22.2 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 2 2011-03-17 2016-04-04 2016-04-04 729412 ENSG00000229083 OTTHUMG00000021140 NG_023174 +HGNC:39608 PSMA6P3 proteasome subunit alpha 6 pseudogene 3 pseudogene pseudogene Approved 21q22.3 21q22.3 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 3 2011-03-17 2016-04-04 2016-04-04 100874510 ENSG00000233767 OTTHUMG00000090441 NG_032329 PGOHUM00000239097 +HGNC:39609 PSMA6P4 proteasome subunit alpha 6 pseudogene 4 pseudogene pseudogene Approved 13q32.1 13q32.1 proteasome (prosome, macropain) subunit, alpha type, 6 pseudogene 4 2011-03-17 2016-04-04 2016-04-04 121906 ENSG00000271625 OTTHUMG00000184875 NG_023173 PGOHUM00000248668 +HGNC:9536 PSMA7 proteasome subunit alpha 7 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "XAPC7|C6|HSPC|RC6-1" "proteasome subunit XAPC7|proteasome subunit RC6-1" proteasome (prosome, macropain) subunit, alpha type, 7 Proteasome 690 1995-11-22 2015-08-12 2015-08-12 5688 ENSG00000101182 OTTHUMG00000032895 uc002ybx.3 AF022815 NM_002792 CCDS13489 O14818 8764072 MGI:1347070 RGD:61851 PSMA7 606607 T01.979 +HGNC:20631 PSMA7P proteasome subunit alpha 7 pseudogene pseudogene pseudogene Approved 9q22.31 09q22.31 proteasome (prosome, macropain) subunit, alpha type, 7 pseudogene 2003-03-10 2016-04-04 2016-04-04 158441 AL354861 NG_002333 +HGNC:22985 PSMA8 proteasome subunit alpha 8 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "MGC26605|PSMA7L" proteasome (prosome, macropain) subunit, alpha type, 8 Proteasome 690 2005-01-14 2015-08-12 2016-07-28 143471 ENSG00000154611 OTTHUMG00000179426 uc002kvq.4 BC047355 NM_144662 "CCDS32808|CCDS45842|CCDS45843|CCDS77169" Q8TAA3 MGI:1920927 RGD:1311659 PSMA8 T01.974 +HGNC:9537 PSMB1 proteasome subunit beta 1 protein-coding gene gene with protein product Approved 6q27 06q27 "PMSB1|HC5" proteasome (prosome, macropain) subunit, beta type, 1 Proteasome 690 1995-05-03 2015-08-12 2015-08-25 5689 ENSG00000008018 OTTHUMG00000016087 uc011ehe.3 D00761 NM_002793 CCDS34577 P20618 2025653 MGI:104884 RGD:621092 PSMB1 602017 T01.986 objectId:2404 +HGNC:9539 PSMB2 proteasome subunit beta 2 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 HC7-I proteasome (prosome, macropain) subunit, beta type, 2 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5690 ENSG00000126067 OTTHUMG00000004169 uc001bzf.4 D26599 NM_002794 "CCDS394|CCDS72755" P49721 7918633 MGI:1347045 RGD:61874 PSMB2 602175 T01.984 objectId:2405 +HGNC:9540 PSMB3 proteasome subunit beta 3 protein-coding gene gene with protein product Approved 17q12 17q12 "HC10-II|MGC4147" proteasome (prosome, macropain) subunit, beta type, 3 Proteasome 690 1995-05-03 2015-08-12 2015-09-07 5691 ENSG00000277791 OTTHUMG00000188503 uc032glv.2 BC013008 NM_002795 CCDS11328 P49720 7918633 MGI:1347014 RGD:61875 PSMB3 602176 T01.983 +HGNC:20633 PSMB3P1 proteasome subunit beta 3 pseudogene 1 pseudogene pseudogene Approved 12q12 12q12 PSMB3P proteasome (prosome, macropain) subunit, beta type, 3 pseudogene 2003-03-12 2016-04-04 2016-04-04 2016-04-04 121131 AC009779 NG_001533 T01.P02 +HGNC:30150 PSMB3P2 proteasome subunit beta 3 pseudogene 2 pseudogene pseudogene Approved 2q35 02q35 proteasome (prosome, macropain) subunit, beta type, 3 pseudogene 2 2007-07-31 2016-04-04 2016-04-04 130700 ENSG00000235444 OTTHUMG00000155343 NG_001538 9847074 PGOHUM00000250449 T01.P03 +HGNC:9541 PSMB4 proteasome subunit beta 4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "HN3|PROS26" proteasome (prosome, macropain) subunit, beta type, 4 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5692 ENSG00000159377 OTTHUMG00000012494 uc001eyc.2 D26600 NM_002796 CCDS996 P28070 7918633 MGI:1098257 RGD:61877 PSMB4 602177 T01.987 +HGNC:9542 PSMB5 proteasome subunit beta 5 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "X|MB1" proteasome (prosome, macropain) subunit, beta type, 5 Proteasome 690 1995-05-03 2015-08-12 2015-08-25 5693 ENSG00000100804 OTTHUMG00000028713 uc001wii.3 D29011 NM_002797 "CCDS9584|CCDS45083|CCDS45084" P28074 "8066462|8811196" MGI:1194513 RGD:61879 PSMB5 600306 T01.012 objectId:2406 +HGNC:9543 PSMB6 proteasome subunit beta 6 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "Y|DELTA" proteasome (prosome, macropain) subunit, beta type, 6 Proteasome 690 1995-05-03 2015-08-12 2016-10-05 5694 ENSG00000142507 OTTHUMG00000090777 uc002fzb.4 BC000835 NM_002798 "CCDS11056|CCDS73944" P28072 "8066462|1888762" MGI:104880 RGD:61881 PSMB6 600307 T01.010 objectId:2407 +HGNC:9544 PSMB7 proteasome subunit beta 7 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 proteasome (prosome, macropain) subunit, beta type, 7 Proteasome 690 1995-11-22 2015-08-12 2016-10-05 5695 ENSG00000136930 OTTHUMG00000021042 uc004boj.5 AJ420455 NM_002799 CCDS6855 Q99436 8811196 MGI:107637 RGD:621093 PSMB7 604030 T01.011 +HGNC:49192 PSMB7P1 PSMB7 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 2013-09-26 2013-09-26 100422289 ENSG00000259074 OTTHUMG00000170785 NG_027332 PGOHUM00000248039 +HGNC:9545 PSMB8 proteasome subunit beta 8 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "RING10|D6S216E|PSMB5i|beta5i" LMP7 "proteasome (prosome, macropain) subunit, beta type, 8 (large multifunctional protease 7)|large multifunctional peptidase 7|proteasome (prosome, macropain) subunit, beta type, 8" Proteasome 690 1992-06-25 2015-08-12 2016-10-05 5696 ENSG00000204264 OTTHUMG00000031285 uc003oce.4 NM_148919 "CCDS4756|CCDS4757" P28062 "1529427|10329130" MGI:1346527 RGD:3426 PSMB8 177046 258610 T01.015 objectId:2408 +HGNC:39758 PSMB8-AS1 PSMB8 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 6p21.32 06p21.32 "XXbac-BPG246D15.8|TAP1-AS1" TAPSAR1 TAP1 and PSMB8 antisense RNA 1 2013-07-25 2014-06-09 2014-06-09 2014-06-09 100507463 ENSG00000204261 OTTHUMG00000140123 NR_037173 +HGNC:9546 PSMB9 proteasome subunit beta 9 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "RING12|beta1i|PSMB6i" LMP2 "proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)|large multifunctional peptidase 2|proteasome (prosome, macropain) subunit, beta type, 9" Proteasome 690 1991-12-18 2015-08-12 2016-10-05 5698 ENSG00000240065 OTTHUMG00000031287 uc063wzi.1 NM_002800 CCDS4759 P28065 "1922385|1529427" MGI:1346526 RGD:3427 PSMB9 177045 T01.013 objectId:2409 +HGNC:9538 PSMB10 proteasome subunit beta 10 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "LMP10|MGC1665|beta2i" MECL1 proteasome (prosome, macropain) subunit, beta type, 10 Proteasome 690 1993-07-29 2015-08-12 2015-08-12 5699 ENSG00000205220 OTTHUMG00000137553 uc002eux.3 Y13640 NM_002801 CCDS10853 P40306 8268911 MGI:1096380 RGD:1307428 PSMB10 176847 T01.014 +HGNC:31963 PSMB11 proteasome subunit beta 11 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 beta5t proteasome (prosome, macropain) subunit, beta type, 11 2008-01-21 2016-04-04 2016-04-04 122706 ENSG00000222028 OTTHUMG00000170279 uc010ake.2 NM_001099780 CCDS41923 A5LHX3 17540904 MGI:1921152 RGD:1308773 PSMB11 611137 T01.016 +HGNC:9547 PSMC1 proteasome 26S subunit, ATPase 1 protein-coding gene gene with protein product Approved 14q32.11 14q32.11 "S4|p56" proteasome (prosome, macropain) 26S subunit, ATPase, 1 "AAA ATPases|Proteasome" "413|690" 1995-11-27 2015-08-12 2015-08-12 5700 ENSG00000100764 OTTHUMG00000171019 uc001xyf.4 L02426 NM_002802 "CCDS32139|CCDS81837" P62191 9473509 MGI:106054 RGD:621097 PSMC1 602706 +HGNC:30147 PSMC1P1 proteasome 26S subunit, ATPase 1 pseudogene 1 pseudogene pseudogene Approved 3p14.1 03p14.1 bcm3415 PSMC1P "proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene|proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 1" 2004-06-28 2011-03-29 2016-04-04 2016-04-04 151645 ENSG00000241506 OTTHUMG00000158743 NG_001556 PGOHUM00000238055 +HGNC:39777 PSMC1P2 proteasome 26S subunit, ATPase 1 pseudogene 2 pseudogene pseudogene Approved 7p15.2 07p15.2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 2 2011-03-29 2016-04-04 2016-04-04 442291 ENSG00000213781 OTTHUMG00000152713 NG_008641 PGOHUM00000233159 +HGNC:39778 PSMC1P3 proteasome 26S subunit, ATPase 1 pseudogene 3 pseudogene pseudogene Approved 7q33 07q33 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 3 2011-03-29 2016-04-04 2016-04-04 392100 ENSG00000231244 OTTHUMG00000155634 NG_009401 +HGNC:39779 PSMC1P4 proteasome 26S subunit, ATPase 1 pseudogene 4 pseudogene pseudogene Approved 5q11.2 05q11.2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 4 2011-03-29 2016-04-04 2016-04-04 345645 ENSG00000248781 OTTHUMG00000162303 NG_022936 +HGNC:39780 PSMC1P5 proteasome 26S subunit, ATPase 1 pseudogene 5 pseudogene pseudogene Approved 5q21.3 05q21.3 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 5 2011-03-29 2016-04-04 2016-04-04 106480732 ENSG00000250273 OTTHUMG00000162813 NG_045212 PGOHUM00000235723 +HGNC:39781 PSMC1P6 proteasome 26S subunit, ATPase 1 pseudogene 6 pseudogene pseudogene Approved 3p11.2 03p11.2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 6 2011-03-29 2016-04-04 2016-04-04 643766 ENSG00000240255 OTTHUMG00000159001 NG_022211 PGOHUM00000237673 +HGNC:39782 PSMC1P7 proteasome 26S subunit, ATPase 1 pseudogene 7 pseudogene pseudogene Approved 3q26.1 03q26.1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 7 2011-03-29 2016-04-04 2016-04-04 646085 ENSG00000243838 OTTHUMG00000159070 NG_022226 +HGNC:39783 PSMC1P8 proteasome 26S subunit, ATPase 1 pseudogene 8 pseudogene pseudogene Approved 12p12.3 12p12.3 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 8 2011-03-29 2016-04-04 2016-04-04 390297 ENSG00000256896 OTTHUMG00000168806 NG_021683 +HGNC:39784 PSMC1P9 proteasome 26S subunit, ATPase 1 pseudogene 9 pseudogene pseudogene Approved 12p12.3 12p12.3 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 9 2011-03-29 2016-04-04 2016-04-04 643668 ENSG00000255993 OTTHUMG00000168910 NG_021707 PGOHUM00000239696 +HGNC:39785 PSMC1P10 proteasome 26S subunit, ATPase 1 pseudogene 10 pseudogene pseudogene Approved 2p24.2 02p24.2 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 10 2011-03-29 2016-04-04 2016-04-04 388925 ENSG00000236348 OTTHUMG00000151763 NG_021557 PGOHUM00000240588 +HGNC:39786 PSMC1P11 proteasome 26S subunit, ATPase 1 pseudogene 11 pseudogene pseudogene Approved 6p25.1 06p25.1 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 11 2011-03-29 2016-04-04 2016-04-04 442153 ENSG00000217385 OTTHUMG00000014167 NG_022341 PGOHUM00000243476 +HGNC:39787 PSMC1P12 proteasome 26S subunit, ATPase 1 pseudogene 12 pseudogene pseudogene Approved 1p12 01p12 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 12 2011-03-29 2016-04-04 2016-04-04 644094 ENSG00000226126 OTTHUMG00000012013 NG_022737 PGOHUM00000244161 +HGNC:39788 PSMC1P13 proteasome 26S subunit, ATPase 1 pseudogene 13 pseudogene pseudogene Approved 13q21.33 13q21.33 proteasome (prosome, macropain) 26S subunit, ATPase, 1 pseudogene 13 2011-03-29 2016-04-04 2016-04-04 100422305 ENSG00000232314 OTTHUMG00000017055 NG_024865 +HGNC:9548 PSMC2 proteasome 26S subunit, ATPase 2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MSS1|S7|Nbla10058" "proteasome 26S subunit, ATPase, 2|mammalian suppressor of sgv-1 of yeast|protease 26S subunit 7|putative protein product of Nbla10058" proteasome (prosome, macropain) 26S subunit, ATPase, 2 "AAA ATPases|Proteasome" "413|690" 1995-12-22 2015-08-12 2016-10-05 5701 ENSG00000161057 OTTHUMG00000157206 uc003vbs.4 D11094 NM_002803 CCDS5731 P35998 "9473509|1377363" MGI:109555 RGD:3428 PSMC2 154365 +HGNC:9549 PSMC3 proteasome 26S subunit, ATPase 3 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "TBP1|TBP-1" proteasome (prosome, macropain) 26S subunit, ATPase, 3 "AAA ATPases|Proteasome" "413|690" 1995-12-06 2015-08-12 2015-08-12 5702 ENSG00000165916 OTTHUMG00000167692 uc001nfh.2 M34079 NM_002804 CCDS7935 P17980 "9048938|9473509" MGI:1098754 RGD:61905 PSMC3 186852 +HGNC:17928 PSMC3IP PSMC3 interacting protein protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "TBPIP|GT198|HUMGT198A|Hop2" TBP-1 interacting protein 2006-02-27 2015-06-26 29893 ENSG00000131470 OTTHUMG00000180247 uc002iai.4 "AB030304|NM_013290|BC008792" NM_013290 "CCDS11431|CCDS45688|CCDS59289" Q9P2W1 "7490091|10806355|11739747" MGI:1098610 RGD:621885 PSMC3IP 608665 285341 +HGNC:9550 PSMC3P1 proteasome 26S subunit, ATPase 3 pseudogene 1 pseudogene pseudogene Approved 9p 09p PSMC3P proteasome (prosome, macropain) 26S subunit, ATPase, 3 pseudogene 1997-06-09 2016-04-04 2016-04-04 2016-04-04 5703 NG_002368 9048938 +HGNC:9551 PSMC4 proteasome 26S subunit, ATPase 4 protein-coding gene gene with protein product Approved 19q13.11-q13.13 19q13.11-q13.13 "TBP7|S6|MGC8570|MGC13687|MGC23214|TBP-7" "protease 26S subunit 6|Tat-binding protein 7|MB67 interacting protein" MIP224 proteasome (prosome, macropain) 26S subunit, ATPase, 4 "AAA ATPases|Proteasome" "413|690" 1995-12-06 2015-08-12 2015-08-12 5704 ENSG00000013275 OTTHUMG00000182577 uc002omq.5 U27515 NM_006503 "CCDS12547|CCDS46076" P43686 "9473509|8603043" MGI:1346093 RGD:621102 PSMC4 602707 +HGNC:9552 PSMC5 proteasome 26S subunit, ATPase 5 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "SUG1|p45/SUG|TBP10|p45|S8|TRIP1|SUG-1" proteasome (prosome, macropain) 26S subunit, ATPase, 5 "AAA ATPases|Proteasome" "413|690" 1995-12-08 2015-08-12 2015-08-12 5705 ENSG00000087191 OTTHUMG00000179013 uc002jcb.4 L38810 NM_002805 "CCDS11645|CCDS56043" P62195 "9473509|9048938" MGI:105047 RGD:708376 PSMC5 601681 +HGNC:9553 PSMC6 proteasome 26S subunit, ATPase 6 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 p42 proteasome (prosome, macropain) 26S subunit, ATPase, 6 "AAA ATPases|Proteasome" "413|690" 1995-12-22 2015-08-12 2015-08-12 5706 ENSG00000100519 OTTHUMG00000152333 uc010tqx.3 NM_002806 CCDS9710 P62333 "8674546|9473509" MGI:1914339 RGD:1308825 PSMC6 602708 +HGNC:20634 PSMC6P1 proteasome 26S subunit, ATPase, 6 pseudogene 1 pseudogene pseudogene Approved 8q12.1 08q12.1 PSMC6P proteasome (prosome, macropain) 26S subunit, ATPase, 6 pseudogene 2003-03-12 2008-03-07 2008-03-07 2014-11-18 266723 NG_002379 +HGNC:30149 PSMC6P2 proteasome 26S subunit, ATPase, 6 pseudogene 2 pseudogene pseudogene Approved 12q15 12q15 2008-03-07 2010-04-01 160410 NG_001564 +HGNC:34012 PSMC6P3 proteasome 26S subunit, ATPase, 6 pseudogene 3 pseudogene pseudogene Approved 5p13.3 05p13.3 2008-03-07 2010-04-01 100128218 NG_007662 +HGNC:9554 PSMD1 proteasome 26S subunit, non-ATPase 1 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "S1|P112|Rpn2" proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 Proteasome 690 1995-11-28 2015-08-12 2015-09-07 5707 ENSG00000173692 OTTHUMG00000133223 uc002vrn.3 D44466 XM_017004517 "CCDS2482|CCDS54436" Q99460 8816993 MGI:1917497 RGD:621669 PSMD1 +HGNC:9559 PSMD2 proteasome 26S subunit, non-ATPase 2 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "S2|P97|TRAP2|MGC14274|Rpn1" proteasome (prosome, macropain) 26S subunit, non-ATPase, 2 Proteasome 690 1995-11-28 2015-08-12 2016-10-05 5708 ENSG00000175166 OTTHUMG00000156796 uc003fnn.3 AK095245 NM_002808 "CCDS3258|CCDS63853|CCDS63854" Q13200 8774743 MGI:1096584 RGD:1305752 PSMD2 606223 +HGNC:30154 PSMD2P1 proteasome 26S subunit, non-ATPase, 2 pseudogene 1 pseudogene pseudogene Approved 1q43 01q43 2008-03-07 2008-03-07 2008-03-07 266783 NG_002387 +HGNC:9560 PSMD3 proteasome 26S subunit, non-ATPase 3 protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "S3|P58|Rpn3" TSTA2 "tissue specific transplantation antigen 2|proteasome (prosome, macropain) 26S subunit, non-ATPase, 3" Proteasome 690 1995-11-28 2015-08-12 2016-10-05 5709 ENSG00000108344 OTTHUMG00000133251 uc002htn.3 D67025 NM_002809 CCDS11356 O43242 9017604 MGI:98858 RGD:1311470 PSMD3 +HGNC:9561 PSMD4 proteasome 26S subunit, non-ATPase 4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "S5A|AF-1|AF|Rpn10" proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 Proteasome 690 1995-11-28 2015-08-12 2016-10-05 5710 ENSG00000159352 OTTHUMG00000012349 uc001exl.4 U51007 NM_002810 "CCDS991|CCDS81375" P55036 8641424 MGI:1201670 RGD:621109 PSMD4 601648 +HGNC:9562 PSMD4P1 proteasome 26S subunit, non-ATPase 4 pseudogene 1 pseudogene pseudogene Approved 21q22.13 21q22.13 "PSMD4P|PSMD15" "proteasome (prosome, macropain) 26S subunit, non-ATPase, 4, pseudogene|proteasome (prosome, macropain) 26S subunit, non-ATPase, 15|proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 pseudogene 1" 2000-05-23 2010-12-20 2016-04-04 2016-10-05 54035 ENSG00000223741 OTTHUMG00000086641 NG_002723 +HGNC:9563 PSMD5 proteasome 26S subunit, non-ATPase 5 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "S5B|KIAA0072" proteasome (prosome, macropain) 26S subunit, non-ATPase, 5 Proteasome 690 1995-12-05 2015-08-12 2016-10-05 5711 ENSG00000095261 OTTHUMG00000020573 uc004bko.5 AK001065 NM_005047 "CCDS6824|CCDS59143" Q16401 7559544 MGI:1914248 RGD:1308434 PSMD5 604452 +HGNC:27367 PSMD5-AS1 PSMD5 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9q33.2 09q33.2 2013-06-07 2014-11-19 253039 ENSG00000226752 OTTHUMG00000020572 NR_024408 12477932 +HGNC:9564 PSMD6 proteasome 26S subunit, non-ATPase 6 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "S10|p44S10|KIAA0107|Rpn7" proteasome (prosome, macropain) 26S subunit, non-ATPase, 6 Proteasome 690 1995-12-06 2015-08-12 2015-08-12 9861 ENSG00000163636 OTTHUMG00000158765 uc003dma.3 AF215935 NM_014814 "CCDS2901|CCDS63677|CCDS63678|CCDS63679" Q15008 10723133 MGI:1913663 RGD:735127 PSMD6 +HGNC:44125 PSMD6-AS2 PSMD6 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 PSMD6 antisense RNA 2 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100507062 ENSG00000239653 OTTHUMG00000158764 uc003dly.3 AK023371 NR_038286 +HGNC:9565 PSMD7 proteasome 26S subunit, non-ATPase 7 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "S12|P40|MOV34|Rpn8" Mov34 homolog "proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 (Mov34 homolog)|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7" Proteasome 690 1991-06-05 2015-08-12 2016-10-05 5713 ENSG00000103035 OTTHUMG00000137601 uc002fcq.3 D50063 NM_002811 CCDS10910 P51665 7755639 MGI:1351511 RGD:1306902 PSMD7 157970 M67.973 +HGNC:7202 PSMD7P1 proteasome 26S subunit, non-ATPase 7 pseudogene 1 pseudogene pseudogene Approved 17q24.2 17q24.2 "MOV34L|PSMD7L" "Moloney leukemia virus 34 proviral integration homolog-like|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 like|proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 pseudogene 1" 1991-06-05 2010-10-15 2015-11-18 2015-11-18 280637 ENSG00000266707 OTTHUMG00000179529 NG_002412 PGOHUM00000237486 +HGNC:9566 PSMD8 proteasome 26S subunit, non-ATPase 8 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "S14|Nin1p|p31|HIP6|HYPF|Rpn12" proteasome (prosome, macropain) 26S subunit, non-ATPase, 8 Proteasome 690 1997-02-19 2015-08-12 2015-08-12 5714 ENSG00000099341 OTTHUMG00000150691 uc002oii.5 D38047 NM_002812 CCDS12515 P48556 7621825 MGI:1888669 RGD:1309842 PSMD8 +HGNC:34013 PSMD8P1 proteasome 26S subunit, non-ATPase, 8 pseudogene 1 pseudogene pseudogene Approved 1q21.3 01q21.3 2008-03-07 2014-11-19 100422411 ENSG00000228264 OTTHUMG00000036071 NG_026992 PGOHUM00000259496 +HGNC:9567 PSMD9 proteasome 26S subunit, non-ATPase 9 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "p27|Rpn4" proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 "Proteasome|PDZ domain containing" "690|1220" 1997-02-19 2015-08-12 2016-10-05 5715 ENSG00000110801 OTTHUMG00000168945 uc001ubl.5 AB003177 NM_002813 "CCDS9225|CCDS58284" O00233 9653651 MGI:1914401 RGD:621110 PSMD9 603146 +HGNC:9555 PSMD10 proteasome 26S subunit, non-ATPase 10 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 p28 gankyrin proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 "Ankyrin repeat domain containing|Proteasome" "403|690" 1997-02-19 2015-08-12 2015-09-07 5716 ENSG00000101843 OTTHUMG00000022177 uc004enp.3 AB009619 NM_170750 "CCDS14536|CCDS14537" O75832 9714768 MGI:1858898 RGD:620350 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PSMD10 PSMD10 300880 +HGNC:16602 PSMD10P1 proteasome 26S subunit, non-ATPase, 10 pseudogene 1 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ914P20.4 PSMD10P proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 pseudogene 2001-09-17 2008-03-07 2008-03-07 2011-03-18 170541 ENSG00000228663 OTTHUMG00000032736 AL034553 NG_001050 PGOHUM00000247673 +HGNC:30151 PSMD10P2 proteasome 26S subunit, non-ATPase, 10 pseudogene 2 pseudogene pseudogene Approved 3q27.3 03q27.3 2008-03-07 2011-03-18 280644 ENSG00000226652 OTTHUMG00000156575 NG_002417 PGOHUM00000238294 +HGNC:30152 PSMD10P3 proteasome 26S subunit, non-ATPase, 10 pseudogene 3 pseudogene pseudogene Approved 13q22.1 13q22.1 2008-03-07 2011-03-18 338091 ENSG00000232041 OTTHUMG00000017072 NG_002627 PGOHUM00000248631 +HGNC:9556 PSMD11 proteasome 26S subunit, non-ATPase 11 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "S9|p44.5|MGC3844|Rpn6" proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 Proteasome 690 1997-02-19 2015-08-12 2016-10-05 5717 ENSG00000108671 OTTHUMG00000132811 uc002hhm.5 AB003102 NM_002815 CCDS11272 O00231 "9426256|9119060" MGI:1916327 RGD:1306450 PSMD11 604449 +HGNC:9557 PSMD12 proteasome 26S subunit, non-ATPase 12 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 "p55|Rpn5" proteasome (prosome, macropain) 26S subunit, non-ATPase, 12 Proteasome 690 1997-02-19 2015-08-12 2016-10-05 5718 ENSG00000197170 OTTHUMG00000140376 uc002jfy.4 AB003103 "NM_002816|NM_174871" "CCDS11669|CCDS11670" O00232 9426256 MGI:1914247 RGD:1359305 PSMD12 604450 +HGNC:30153 PSMD12P proteasome 26S subunit, non-ATPase, 12 pseudogene pseudogene pseudogene Approved 3p14 03p14 2008-03-07 2010-03-09 317753 ENSG00000240135 OTTHUMG00000158817 NG_002463 +HGNC:9558 PSMD13 proteasome 26S subunit, non-ATPase 13 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "p40.5|Rpn9" proteasome (prosome, macropain) 26S subunit, non-ATPase, 13 Proteasome 690 1997-02-19 2015-08-12 2015-08-12 5719 ENSG00000185627 OTTHUMG00000119072 uc001lol.3 AB009398 NM_002817 "CCDS7692|CCDS44504" Q9UNM6 "9714768|8811196" MGI:1345192 RGD:1305236 PSMD13 603481 +HGNC:16889 PSMD14 proteasome 26S subunit, non-ATPase 14 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "POH1|pad1|Rpn11" proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 Proteasome 690 2003-03-17 2015-08-12 2016-10-05 10213 ENSG00000115233 OTTHUMG00000153882 uc002ubu.4 U86782 NM_005805 CCDS46437 O00487 9374539 MGI:1913284 RGD:1594532 PSMD14 607173 objectId:2410 +HGNC:9568 PSME1 proteasome activator subunit 1 protein-coding gene gene with protein product Approved 14q12 14q12 "IFI5111|PA28alpha" proteasome (prosome, macropain) activator subunit 1 (PA28 alpha) Proteasome 690 1997-02-11 2015-08-12 2016-10-05 5720 ENSG00000092010 OTTHUMG00000028795 uc001wmg.4 NM_006263 "CCDS9612|CCDS41930|CCDS61415" Q06323 8269930 MGI:1096367 RGD:3429 PSME1 600654 +HGNC:9569 PSME2 proteasome activator subunit 2 protein-coding gene gene with protein product Approved 14q12 14q12 PA28beta proteasome (prosome, macropain) activator subunit 2 (PA28 beta) Proteasome 690 1997-02-11 2015-08-12 2016-10-05 5721 ENSG00000100911 OTTHUMG00000028797 uc001wmj.4 NM_002818 CCDS9614 Q9UL46 7789512 MGI:1096365 RGD:3430 PSME2 602161 +HGNC:20632 PSME2P1 proteasome activator subunit 2 pseudogene 1 pseudogene pseudogene Approved 5q21 05q21 PSME2P proteasome (prosome, macropain) activator subunit 2 pseudogene 2003-03-10 2008-03-07 2008-03-07 2008-03-07 257093 AC116347 NG_002626 +HGNC:30160 PSME2P2 proteasome activator subunit 2 pseudogene 2 pseudogene pseudogene Approved 13q14.2 13q14.2 2008-03-07 2008-03-07 2014-11-19 338099 ENSG00000225131 OTTHUMG00000016907 NG_002632 PGOHUM00000248589 +HGNC:30156 PSME2P3 proteasome activator subunit 2 pseudogene 3 pseudogene pseudogene Approved 4q32.1 04q32.1 2008-03-07 2014-11-19 338095 NG_002628 PGOHUM00000246119 +HGNC:30157 PSME2P4 proteasome activator subunit 2 pseudogene 4 pseudogene pseudogene Approved 4p14 04p14 2008-03-07 2014-11-19 338096 NG_002629 PGOHUM00000245497 +HGNC:30158 PSME2P5 proteasome activator subunit 2 pseudogene 5 pseudogene pseudogene Approved 8p21 08p21 2008-03-07 2014-11-19 338097 NG_002630 PGOHUM00000249596 +HGNC:30159 PSME2P6 proteasome activator subunit 2 pseudogene 6 pseudogene pseudogene Approved 10p12.31 10p12.31 2008-03-07 2016-08-16 338098 ENSG00000227462 OTTHUMG00000017802 NG_002631 PGOHUM00000290068 +HGNC:9570 PSME3 proteasome activator subunit 3 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "Ki|PA28-gamma|REG-GAMMA|PA28G" proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) Proteasome 690 1999-06-04 2015-08-12 2016-01-15 10197 ENSG00000131467 OTTHUMG00000180654 uc002ibr.5 U11292 NM_176863 "CCDS11442|CCDS45689|CCDS59290|CCDS82133" P61289 7951316 MGI:1096366 RGD:1306996 PSME3 605129 +HGNC:20635 PSME4 proteasome activator subunit 4 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 "PA200|KIAA0077" proteasome (prosome, macropain) activator subunit 4 Proteasome 690 2003-04-14 2015-08-12 2016-10-05 23198 ENSG00000068878 OTTHUMG00000151852 uc002rxp.2 D38521 XM_040158 CCDS33197 Q14997 "7584044|12093752" MGI:2143994 RGD:1591971 PSME4 607705 +HGNC:9571 PSMF1 proteasome inhibitor subunit 1 protein-coding gene gene with protein product Approved 20p13 20p13 PI31 proteasome inhibitor hP131 subunit proteasome (prosome, macropain) inhibitor subunit 1 (PI31) Proteasome 690 1999-04-15 2015-08-12 2015-08-12 9491 ENSG00000125818 OTTHUMG00000031656 uc002wel.4 D88378 NM_178578 "CCDS13010|CCDS82589" Q92530 10363639 MGI:1346072 RGD:1587528 PSMF1 +HGNC:3043 PSMG1 proteasome assembly chaperone 1 protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "c21-LRP|LRPC21|PAC1" DSCR2 "Down syndrome critical region gene 2|proteasome (prosome, macropain) assembly chaperone 1" 1999-09-17 2007-10-23 2016-04-04 2016-10-05 8624 ENSG00000183527 OTTHUMG00000066034 uc002yxi.5 AJ006291 NM_003720 "CCDS13660|CCDS13661" O95456 "10872820|17189198" MGI:1860263 RGD:1305454 PSMG1 605296 +HGNC:24929 PSMG2 proteasome assembly chaperone 2 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "HCCA3|MDS003|MGC15092|CLAST3|HsT1707|PAC2" "hepatocellular carcinoma susceptibility protein|CD40 ligand-activated specific transcript 3" TNFSF5IP1 "tumor necrosis factor superfamily, member 5-induced protein 1|proteasome (prosome, macropain) assembly chaperone 2" 2004-03-04 2007-10-23 2016-04-04 2016-04-04 56984 ENSG00000128789 OTTHUMG00000131703 uc002krk.5 AF276707 NM_020232 "CCDS11862|CCDS67440" Q969U7 "11854909|12147697|17189198" MGI:1922901 RGD:1304867 PSMG2 609702 +HGNC:22420 PSMG3 proteasome assembly chaperone 3 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "MGC10911|PAC3" C7orf48 "chromosome 7 open reading frame 48|proteasome (prosome, macropain) assembly chaperone 3" 2006-08-30 2007-08-16 2016-04-04 2016-04-04 84262 ENSG00000157778 OTTHUMG00000119043 uc064axx.1 BC027171 NM_032302 CCDS5327 Q9BT73 17189198 MGI:1913756 RGD:2319950 PSMG3 +HGNC:22230 PSMG3-AS1 PSMG3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 7p22.3 07p22.3 KIAA1908 2012-11-06 2014-11-19 114796 ENSG00000230487 OTTHUMG00000151452 uc021zys.2 NR_021487 Q96PY0 +HGNC:21108 PSMG4 proteasome assembly chaperone 4 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 PAC4 C6orf86 "chromosome 6 open reading frame 86|proteasome (prosome, macropain) assembly chaperone 4" 2003-11-26 2008-02-25 2016-04-04 2016-04-04 389362 ENSG00000180822 OTTHUMG00000014142 uc010jnm.2 XM_011514591 "CCDS47360|CCDS47361|CCDS47362" Q5JS54 17707236 MGI:1916916 RGD:1589955 PSMG4 +HGNC:17202 PSORS1C1 psoriasis susceptibility 1 candidate 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 SEEK1 C6orf16 chromosome 6 open reading frame 16 2002-02-13 2003-06-12 2016-10-05 170679 ENSG00000204540 OTTHUMG00000031077 uc003nsl.2 AB031479 NM_014068 CCDS34390 Q9UIG5 PSORS1C1 613525 +HGNC:17199 PSORS1C2 psoriasis susceptibility 1 candidate 2 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 SPR1 C6orf17 chromosome 6 open reading frame 17 2002-02-13 2003-06-12 2016-10-05 170680 ENSG00000204538 OTTHUMG00000031081 uc003nso.5 AB031480 NM_014069 CCDS4694 Q9UIG4 MGI:1930025 RGD:1591981 PSORS1C2 613526 +HGNC:17203 PSORS1C3 psoriasis susceptibility 1 candidate 3 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 NCRNA00196 non-protein coding RNA 196 psoriasis susceptibility 1 candidate 3 2002-02-13 2009-08-21 2013-08-27 100130889 ENSG00000204528 OTTHUMG00000031054 uc011dnh.1 NR_026816 +HGNC:9575 PSORS3 psoriasis susceptibility 3 phenotype phenotype only Approved 4q 04q 1998-10-23 1998-10-23 7889 8841203 601454 +HGNC:17275 PSORS4 psoriasis susceptibility 4 phenotype phenotype only Approved 1q21 01q21 2001-11-28 2014-01-30 10547 "9886260|11348461" 603935 +HGNC:17953 PSORS5 psoriasis susceptibility 5 phenotype phenotype only Approved 3q21 03q21 2002-01-08 2014-01-30 63870 "10573011|11863360|21412248" 604316 +HGNC:33483 PSORS6 psoriasis susceptibility 6 phenotype phenotype only Approved 19p13 19p13 2007-05-31 2014-01-30 63869 "10986047|16163348|19525279" 605364 +HGNC:14207 PSORS7 psoriasis susceptibility 7 phenotype phenotype only Approved 1p 01p 2001-01-12 2011-02-10 65245 11134234 605606 +HGNC:17322 PSORS8 psoriasis susceptibility 8 phenotype phenotype only Approved 16q 16q 2001-12-04 2011-02-10 140454 9259283 610707 +HGNC:31013 PSORS9 psoriasis susceptibility 9 phenotype phenotype only Approved 4q31-q34 04q31-q34 2004-01-12 2011-02-10 359825 12485440 607857 +HGNC:31919 PSORS10 psoriasis susceptibility 10 phenotype phenotype only Approved 18p11.23 18p11.23 2005-02-22 2011-02-10 503613 14632189 612410 +HGNC:20320 PSPC1 paraspeckle component 1 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "PSP1|FLJ10955" RNA binding motif containing 725 2003-04-07 2016-10-05 55269 ENSG00000121390 OTTHUMG00000016502 uc058vtc.1 AK001817 XM_006719844 CCDS41870 Q8WXF1 11790299 MGI:1913895 RGD:1310122 PSPC1 612408 +HGNC:40915 PSPC1-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42702 PSPC1-OT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:42033 PSPC1P1 paraspeckle component 1 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-06-01 2014-11-18 642395 ENSG00000227879 OTTHUMG00000016480 NG_011334 PGOHUM00000248305 +HGNC:42643 PSPC1P2 paraspeckle component 1 pseudogene 2 pseudogene pseudogene Approved 13q12.12 13q12.12 2011-08-10 2013-09-03 100873875 ENSG00000244615 OTTHUMG00000016585 NG_032524 +HGNC:9577 PSPH phosphoserine phosphatase protein-coding gene gene with protein product Approved 7p11.2 07p11.2 PSP HAD Asp-based non-protein phosphatases 1045 2001-06-22 2014-11-19 5723 ENSG00000146733 OTTHUMG00000023441 uc003trh.4 Y10275 NM_004577 CCDS5522 P78330 "6297854|9188776" MGI:97788 RGD:1308764 PSPH 172480 118111 3.1.3.3 +HGNC:9578 PSPHP1 phosphoserine phosphatase pseudogene 1 pseudogene pseudogene Approved 7p11.2 07p11.2 CO9 L-3-phosphoserine-phosphatase homolog PSPHL phosphoserine phosphatase-like 1999-07-09 2011-09-02 2011-09-02 2011-09-02 8781 ENSG00000226278 OTTHUMG00000156125 AJ001612 XM_926720 O15172 9573387 604239 PGOHUM00000233245 +HGNC:9579 PSPN persephin protein-coding gene gene with protein product Approved 19p13.3 19p13.3 PSP Endogenous ligands 542 1997-10-10 2014-11-18 5623 ENSG00000125650 OTTHUMG00000168086 uc010xja.2 AF040962 NM_004158 CCDS12164 O60542 10072588 MGI:1201684 RGD:3432 PSPN 602921 +HGNC:24472 PSRC1 proline and serine rich coiled-coil 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 DDA3 differential display and activated by p53 proline/serine-rich coiled-coil 1 2005-08-08 2016-04-06 2016-04-06 84722 ENSG00000134222 OTTHUMG00000012000 uc031ukv.2 NM_032636 "CCDS797|CCDS30791" Q6PGN9 "12427559|10618717" MGI:1913099 RGD:1585037 PSRC1 613126 +HGNC:28578 PSTK phosphoseryl-tRNA kinase protein-coding gene gene with protein product Approved 10q26.13 10q26.13 MGC35392 "L-seryl-tRNA(Sec) kinase|O-phosphoseryl-tRNA(Sec) kinase" C10orf89 chromosome 10 open reading frame 89 2004-03-16 2007-04-17 2007-04-17 2016-04-05 118672 ENSG00000179988 OTTHUMG00000019191 uc001lgy.2 AK127173 NM_153336 CCDS7633 Q8IV42 15317934 MGI:2685945 RGD:1564300 PSTK 611310 2.7.1.164 +HGNC:9580 PSTPIP1 proline-serine-threonine phosphatase interacting protein 1 protein-coding gene gene with protein product Approved 15q24.3 15q24.3 "PSTPIP|CD2BP1L|CD2BP1|CD2BP1S|H-PIP|PAPAS" "CD2 cytoplasmic tail-binding protein|CD2 antigen-binding protein 1|PEST phosphatase-interacting protein 1" F-BAR domain containing 1288 1999-01-12 2016-10-12 9051 ENSG00000140368 OTTHUMG00000172594 uc002bcf.3 U94778 NM_003978 "CCDS45312|CCDS81910" O43586 9857189 MGI:1321396 RGD:1307557 "PAPA syndrome: INFEVERS: The repertory of Familial Mediterranean Fever (FMF) and Hereditary Inflammatory Disorders Mutations|http://fmf.igh.cnrs.fr/infevers/|LRG_172|http://www.lrg-sequence.org/LRG/LRG_172" PSTPIP1 606347 118114 +HGNC:9581 PSTPIP2 proline-serine-threonine phosphatase interacting protein 2 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 F-BAR domain containing 1288 1999-01-12 2016-10-05 9050 ENSG00000152229 OTTHUMG00000152674 uc002lbp.5 XM_011526253 CCDS32820 Q9H939 9804817 MGI:1335088 RGD:1563090 PSTPIP2 616046 +HGNC:9582 PTAFR platelet activating factor receptor protein-coding gene gene with protein product Approved 1p35.3 01p35.3 Platelet activating factor receptor 208 1991-11-14 2016-03-09 2016-10-05 5724 ENSG00000169403 OTTHUMG00000003953 uc009vte.3 BC063000 NM_000952 CCDS318 P25105 1322356 MGI:106066 RGD:61897 PTAFR 173393 objectId:334 +HGNC:30449 PTAR1 protein prenyltransferase alpha subunit repeat containing 1 protein-coding gene gene with protein product Approved 9q21.12 09q21.12 Prenyltransferase alpha subunit repeat containing 687 2004-05-10 2016-10-05 375743 ENSG00000188647 OTTHUMG00000019982 uc004ahi.4 BC053622 NM_001099666 CCDS47978 Q7Z6K3 12477932 MGI:1921875 RGD:708369 PTAR1 +HGNC:9583 PTBP1 polypyrimidine tract binding protein 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "HNRPI|HNRNP-I|PTB2|PTB3|PTB-1|PTB4|pPTB" heterogeneous nuclear ribonucleoprotein I PTB polypyrimidine tract binding protein (heterogeneous nuclear ribonucleoprotein I) RNA binding motif containing 725 1992-06-29 2002-01-25 2002-01-25 2015-03-26 5725 ENSG00000011304 OTTHUMG00000181789 uc002lpr.3 X60648 NM_002819 "CCDS32859|CCDS42456|CCDS45892" P26599 "1906036|11024286" MGI:97791 RGD:62047 PTBP1 600693 +HGNC:20030 PTBP1P polypyrimidine tract binding protein 1 pseudogene pseudogene pseudogene Approved 14q23.3 14q23.3 2003-01-13 2014-11-19 122888 ENSG00000259078 OTTHUMG00000171170 NG_002328 PGOHUM00000248204 +HGNC:17662 PTBP2 polypyrimidine tract binding protein 2 protein-coding gene gene with protein product Approved 1p21.3 01p21.3 "brPTB|nPTB|PTB|PTBLP" RNA binding motif containing 725 2002-01-25 2014-11-19 58155 ENSG00000117569 OTTHUMG00000010685 uc001drq.4 AB051232 XM_011541874 "CCDS754|CCDS72828|CCDS72829|CCDS72830" Q9UKA9 11003644 MGI:1860489 RGD:1359267 PTBP2 608449 +HGNC:10253 PTBP3 polypyrimidine tract binding protein 3 protein-coding gene gene with protein product Approved 9q32 09q32 DKFZp781I1117 ROD1 "regulator of differentiation (in S. pombe) 1|ROD1 regulator of differentiation 1 (S. pombe)" RNA binding motif containing 725 1999-10-26 2011-11-16 2011-11-16 2014-11-19 9991 ENSG00000119314 OTTHUMG00000020503 uc004bfw.4 AB023967 XM_017015365 "CCDS6784|CCDS55332|CCDS55333|CCDS59140|CCDS59141" O95758 10207106 MGI:1923334 RGD:621671 PTBP3 607527 +HGNC:22198 PTCD1 pentatricopeptide repeat domain 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 KIAA0632 2004-04-05 2006-01-27 26024 ENSG00000106246 OTTHUMG00000154600 uc003uqh.4 AB014532 NM_015545 CCDS34691 O75127 MGI:1919049 RGD:1311473 PTCD1 614774 +HGNC:25734 PTCD2 pentatricopeptide repeat domain 2 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 FLJ12598 2004-04-05 2014-11-19 79810 ENSG00000049883 OTTHUMG00000100953 uc003kcb.5 BC018720 NM_024754 "CCDS4014|CCDS68891|CCDS68892|CCDS75258" Q8WV60 12477932 MGI:1916177 RGD:1310308 PTCD2 615484 +HGNC:31718 PTCD2P1 pentatricopeptide repeat domain 2 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 2004-06-17 2014-11-19 100131302 ENSG00000258456 OTTHUMG00000170987 NG_022837 PGOHUM00000247728 +HGNC:45168 PTCD2P2 pentatricopeptide repeat domain 2 pseudogene 2 pseudogene pseudogene Approved 10q23.31 10q23.31 2013-02-28 2013-02-28 100132487 ENSG00000234256 OTTHUMG00000018704 NG_022186 PGOHUM00000238880 +HGNC:24717 PTCD3 pentatricopeptide repeat domain 3 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "FLJ20758|DKFZp666K071" 2006-08-07 2012-02-24 2014-11-18 55037 ENSG00000132300 OTTHUMG00000153168 uc002sqw.2 NM_017952 CCDS33235 Q96EY7 8889548 MGI:1917206 RGD:1565582 PTCD3 614918 +HGNC:9585 PTCH1 patched 1 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 BCNS "NBCCS|PTCH" "patched (Drosophila) homolog|patched homolog (Drosophila)|patched homolog 1 (Drosophila)" 1996-07-19 2006-09-26 2010-06-24 2016-10-12 5727 ENSG00000185920 OTTHUMG00000020280 uc004avk.5 AI494442 NM_000264 "CCDS6714|CCDS43851|CCDS47995|CCDS47996" Q13635 8658145 MGI:105373 RGD:621425 LRG_515|http://www.lrg-sequence.org/LRG/LRG_515 PTCH1 601309 118121 +HGNC:9586 PTCH2 patched 2 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "patched (Drosophila) homolog 2|patched homolog 2 (Drosophila)" 1998-10-19 2010-06-24 2014-11-19 8643 ENSG00000117425 OTTHUMG00000008490 uc010olf.3 AF091501 NM_003738 "CCDS516|CCDS53312" Q9Y6C5 "9811851|9931336" MGI:1095405 PTCH2 603673 118126 +HGNC:26392 PTCHD1 patched domain containing 1 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 FLJ30296 2004-09-02 2016-10-05 139411 ENSG00000165186 OTTHUMG00000021251 uc004dal.5 AK054858 NM_173495 CCDS35215 Q96NR3 MGI:2685233 RGD:1564527 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=PTCHD1 PTCHD1 300828 401078 +HGNC:37703 PTCHD1-AS PTCHD1 antisense RNA (head to head) non-coding RNA RNA, long non-coding Approved Xp22.11 Xp22.11 "PTCHD1AS1|PTCHD1AS2|DDX53-AS1" DDX53 antisense RNA 1 (non-protein coding) 2014-04-15 2014-09-24 100873065 ENSG00000233067 OTTHUMG00000021249 "DA355362|BX115199" NR_073010 +HGNC:24776 PTCHD3 patched domain containing 3 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "FLJ44037|PTR" 2005-05-24 2015-08-25 374308 ENSG00000182077 OTTHUMG00000017860 uc001itu.3 AK126025 XM_370541 CCDS31173 Q3KNS1 MGI:1921925 RGD:1590039 PTCHD3 611791 +HGNC:44945 PTCHD3P1 patched domain containing 3 pseudogene 1 pseudogene pseudogene Approved 10p11.23 10p11.23 2012-12-19 2014-08-07 387647 ENSG00000274985 OTTHUMG00000187781 NG_034006 PGOHUM00000238383 +HGNC:44946 PTCHD3P2 patched domain containing 3 pseudogene 2 pseudogene pseudogene Approved 2q31.1 02q31.1 2012-12-19 2012-12-19 100533664 ENSG00000231550 OTTHUMG00000154119 NG_028775 PGOHUM00000240419 +HGNC:44947 PTCHD3P3 patched domain containing 3 pseudogene 3 pseudogene pseudogene Approved 6q21 06q21 2012-12-19 2012-12-19 2014-02-12 100533665 ENSG00000219700 OTTHUMG00000015341 NG_028811 PGOHUM00000243323 +HGNC:21345 PTCHD4 patched domain containing 4 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "dJ402H5.2|FLJ41841" C6orf138 chromosome 6 open reading frame 138 2003-11-26 2012-02-06 2012-02-06 2014-11-19 442213 ENSG00000244694 OTTHUMG00000150404 uc011dwm.2 NM_001013732 CCDS34473 Q6ZW05 MGI:1920485 RGD:1563020 PTCHD4 616908 +HGNC:21290 PTCRA pre T-cell antigen receptor alpha protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "PTA|PT-ALPHA" 2003-06-02 2016-10-05 171558 ENSG00000171611 OTTHUMG00000014709 uc003osx.4 AF084941 NM_138296 "CCDS4874|CCDS59019|CCDS59020|CCDS75457" Q6ISU1 "8618853|9842925" MGI:104857 RGD:621388 PTCRA 606817 +HGNC:37127 PTCSC1 papillary thyroid carcinoma susceptibility candidate 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24 08q24 "AK023948|NCRNA00197" non-protein coding RNA 197 PTCSC papillary thyroid carcinoma susceptibility candidate (non-protein coding) Long non-coding RNAs 788 2009-07-16 2012-06-18 2012-06-18 2014-10-22 100302522 AK023948 19147577 AK023948 +HGNC:44086 PTCSC2 papillary thyroid carcinoma susceptibility candidate 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 9q22.33 09q22.33 Long non-coding RNAs 788 2014-10-15 2014-10-15 101928337 ENSG00000236130 OTTHUMG00000020335 "HG502283|BE073442" "23408906|25303483" +HGNC:43959 PTCSC3 papillary thyroid carcinoma susceptibility candidate 3 (non-protein coding) non-coding RNA RNA, long non-coding Approved 14q13.3 14q13.3 Long non-coding RNAs 788 2012-05-11 2015-08-21 100886964 ENSG00000259104 OTTHUMG00000170617 uc031qoh.3 "JN689234|CB987890" NR_049735 "22586128|26274343" 614821 +HGNC:9587 PTDSS1 phosphatidylserine synthase 1 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "KIAA0024|PSSA|PSS1" 2000-01-21 2016-10-05 9791 ENSG00000156471 OTTHUMG00000164687 uc003yht.2 D14694 NM_014754 CCDS6271 P48651 MGI:1276575 RGD:1308949 PTDSS1 612792 391631 +HGNC:15463 PTDSS2 phosphatidylserine synthase 2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 PSS2 2001-03-30 2016-10-05 81490 ENSG00000174915 OTTHUMG00000119087 uc001lpj.3 BC001210 XM_011520391 CCDS7696 Q9BVG9 14984733 MGI:1351664 RGD:1307914 PTDSS2 612793 +HGNC:9588 PTEN phosphatase and tensin homolog protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "MMAC1|TEP1|PTEN1" mutated in multiple advanced cancers 1 "BZS|MHAM" "C2 tensin-type domain containing|PTEN protein phosphatases|Phosphoinositide phosphatases" "837|902|1079" 1997-04-21 2008-07-31 2016-10-12 5728 ENSG00000171862 OTTHUMG00000018688 uc001kfb.4 U92436 NM_000314 CCDS31238 P60484 9090379 MGI:109583 RGD:61995 LRG_311|http://www.lrg-sequence.org/LRG/LRG_311 PTEN 601728 118128 objectId:2497 "3.1.3.16|3.1.3.48|3.1.3.67" +HGNC:9589 PTENP1 phosphatase and tensin homolog pseudogene 1 pseudogene pseudogene Approved 9p13.3 09p13.3 "PTEN2|psiPTEN|PTH2|PTEN-rs|PTENpg1" phosphatase and tensin homolog pseudogene 1 (functional) Transcribed pseudogenes with published function 859 1999-09-09 2016-01-29 2016-09-26 11191 ENSG00000237984 OTTHUMG00000000410 "AF023139|BC038293|BY797336" NR_023917 "9393738|9620558|20577206" 613531 PTENP1 +HGNC:48773 PTENP1-AS PTENP1 antisense RNA non-coding RNA RNA, long non-coding Approved 9p13.3 09p13.3 PTENpg1-asRNA Long non-coding RNAs 788 2013-06-10 2014-10-22 101243555 ENSG00000281128 OTTHUMG00000189560 BX374997 NR_103745 23435381 ptenp1asrnas +HGNC:9590 PTER phosphotriesterase related protein-coding gene gene with protein product Approved 10p13 10p13 1999-06-11 2016-10-05 9317 ENSG00000165983 OTTHUMG00000017737 uc001ioh.3 BC015092 NM_030664 "CCDS7111|CCDS58070|CCDS73070" Q96BW5 9925913 MGI:107372 RGD:61313 PTER 604446 +HGNC:23734 PTF1A pancreas specific transcription factor, 1a protein-coding gene gene with protein product Approved 10p12.2 10p12.2 "PTF1-p48|bHLHa29" Basic helix-loop-helix proteins 420 2003-12-04 2016-10-05 256297 ENSG00000168267 OTTHUMG00000017815 uc001irp.4 BK000272 NM_178161 CCDS7143 Q7RTS3 8703005 MGI:1328312 RGD:621709 PTF1A 607194 118135 +HGNC:9591 PTGDR prostaglandin D2 receptor protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "DP|DP1|PTGDR1" Prostaglandin (prostanoid) receptors 207 1995-11-09 2016-07-01 2016-07-01 5729 ENSG00000168229 OTTHUMG00000140299 uc001wzq.3 U31332 NM_000953 "CCDS9707|CCDS61454" Q13258 7642548 MGI:102966 RGD:1565108 PTGDR 604687 objectId:338 +HGNC:4502 PTGDR2 prostaglandin D2 receptor 2 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "CRTH2|CD294|DP2" chemoattractant receptor homologous molecule expressed on T helper type 2 cells GPR44 G protein-coupled receptor 44 "Prostaglandin (prostanoid) receptors|CD molecules" "207|471" 1999-03-12 2011-11-11 2011-11-11 2016-01-15 11251 ENSG00000183134 OTTHUMG00000167796 uc001nqc.3 AF118265 NM_004778 CCDS7994 Q9Y5Y4 10036181 MGI:1330275 RGD:1311986 604837 objectId:339 CD294 +HGNC:9592 PTGDS prostaglandin D2 synthase protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "PGDS|L-PGDS" lipocalin-type prostaglandin D synthase "prostaglandin D2 synthase (21kD, brain)|prostaglandin D2 synthase 21kDa (brain)" Lipocalins 631 1993-07-13 2015-11-16 2016-10-05 5730 ENSG00000107317 OTTHUMG00000020957 uc004cke.4 AA621632 NM_000954 CCDS7019 P41222 1902577 MGI:99261 RGD:3433 PTGDS 176803 objectId:1380 5.3.99.2 +HGNC:9593 PTGER1 prostaglandin E receptor 1 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 EP1 "prostaglandin E receptor 1 (subtype EP1), 42kD|prostaglandin E receptor 1 (subtype EP1), 42kDa" Prostaglandin (prostanoid) receptors 207 1994-07-29 2015-11-09 2015-11-09 5731 ENSG00000160951 OTTHUMG00000039610 uc002mys.3 NM_000955 CCDS12309 P34995 8253813 MGI:97793 RGD:3434 PTGER1 176802 objectId:340 +HGNC:9594 PTGER2 prostaglandin E receptor 2 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 EP2 "prostaglandin E receptor 2 (subtype EP2), 53kD|prostaglandin E receptor 2 (subtype EP2), 53kDa" Prostaglandin (prostanoid) receptors 207 1994-07-29 2015-11-09 2016-10-05 5732 ENSG00000125384 OTTHUMG00000140300 uc001wzr.4 NM_000956 CCDS9708 P43116 "8250933|7759114" MGI:97794 RGD:620020 PTGER2 176804 objectId:341 +HGNC:9595 PTGER3 prostaglandin E receptor 3 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 EP3 prostaglandin E receptor 3 (subtype EP3) Prostaglandin (prostanoid) receptors 207 1994-07-29 2015-11-16 2016-10-05 5733 ENSG00000050628 OTTHUMG00000009399 uc001dfo.4 X83863 NM_000957 "CCDS652|CCDS655|CCDS656|CCDS657|CCDS658|CCDS44160" P43115 "7759114|9073510" MGI:97795 RGD:3435 PTGER3 176806 objectId:342 +HGNC:9596 PTGER4 prostaglandin E receptor 4 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 EP4 prostaglandin E receptor 4 (subtype EP4) Prostaglandin (prostanoid) receptors 207 1995-09-26 2015-11-16 2015-11-16 5734 ENSG00000171522 OTTHUMG00000094769 uc003jlz.5 L28175 NM_000958 CCDS3930 P35408 "7759114|8661119" MGI:104311 RGD:628641 PTGER4 601586 objectId:343 +HGNC:9597 PTGER4P1 prostaglandin E receptor 4 pseudogene 1 pseudogene pseudogene Approved 9p11.2 09p11.2 prostaglandin E receptor 4 (subtype EP4) pseudogene 1 1995-09-26 2015-11-16 2015-11-16 5735 NG_032179 PGOHUM00000236545 +HGNC:9598 PTGER4P2 prostaglandin E receptor 4 pseudogene 2 pseudogene pseudogene Approved 9q21.1 09q21.1 prostaglandin E receptor 4 (subtype EP4) pseudogene 2 1995-09-26 2015-11-16 2015-11-16 5736 ENSG00000184523 OTTHUMG00000058168 NG_046646 +HGNC:44749 PTGER4P2-CDK2AP2P2 PTGER4P2-CDK2AP2P2 readthrough, transcribed pseudogene other readthrough Approved 9q13 09q13 2012-12-07 2016-02-03 2016-02-03 442421 NR_024496 +HGNC:38498 PTGER4P3 prostaglandin E receptor 4 pseudogene 3 pseudogene pseudogene Approved 9q21.11 09q21.11 prostaglandin E receptor 4 (subtype EP4) pseudogene 3 2010-05-18 2015-11-16 2015-11-16 100874378 ENSG00000239684 OTTHUMG00000058665 NG_032202 +HGNC:9599 PTGES prostaglandin E synthase protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "MGST-IV|PIG12|MGST1-L1|TP53I12" "microsomal glutathione S-transferase 1-like 1|tumor protein p53 inducible protein 12|p53-induced gene 12|microsomal prostaglandin E synthase-1|glutathione S-transferase 1-like 1|MGST1-like 1" MGST1L1 1999-05-06 2016-10-05 9536 ENSG00000148344 OTTHUMG00000020791 uc004byi.4 AF010316 NM_004878 CCDS6927 O14684 "9305847|10091672" MGI:1927593 RGD:62076 PTGES 605172 objectId:1377 +HGNC:17822 PTGES2 prostaglandin E synthase 2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 FLJ14038 C9orf15 chromosome 9 open reading frame 15 2002-01-29 2002-06-14 2002-06-13 2016-10-05 80142 ENSG00000148334 OTTHUMG00000020730 uc004bti.4 AK024100 XR_001746383 CCDS6891 Q9H7Z7 11866447 MGI:1917592 RGD:1310836 PTGES2 608152 objectId:1378 +HGNC:48711 PTGES2-AS1 PTGES2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9q34.11 09q34.11 2013-06-07 2013-06-07 389791 ENSG00000232850 OTTHUMG00000187229 "BC141829|BC151210" NR_024425 +HGNC:16049 PTGES3 prostaglandin E synthase 3 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "p23|TEBP|cPGES" prostaglandin E synthase 3 (cytosolic) 2005-06-28 2015-12-04 2016-10-05 10728 ENSG00000110958 OTTHUMG00000170217 uc001slu.6 BC003005 NM_006601 "CCDS31836|CCDS61158|CCDS61159|CCDS61160|CCDS73485" Q15185 "8114727|12077419" MGI:1929282 RGD:1561913 PTGES3 607061 objectId:1379 +HGNC:43943 PTGES3L prostaglandin E synthase 3 like protein-coding gene gene with protein product Approved 17q21.31 17q21.31 prostaglandin E synthase 3 (cytosolic)-like 2012-05-15 2016-06-27 2016-06-27 100885848 ENSG00000267060 OTTHUMG00000180906 uc060fqh.1 NM_001142653 CCDS45692 E9PB15 MGI:1916146 RGD:9413039 PTGES3L +HGNC:43946 PTGES3L-AARSD1 PTGES3L-AARSD1 readthrough other readthrough Approved 17q21.31 17q21.31 2012-05-15 2016-06-27 100885850 ENSG00000108825 OTTHUMG00000180905 uc010whg.3 NM_025267 Q9BTE6 RGD:1561650 PTGES3L-AARSD1 +HGNC:43824 PTGES3P1 prostaglandin E synthase 3 pseudogene 1 pseudogene pseudogene Approved 1p22.2 01p22.2 prostaglandin E synthase 3 (cytosolic) pseudogene 1 2012-03-14 2016-06-27 2016-06-27 284672 ENSG00000234518 OTTHUMG00000010660 NG_007034 +HGNC:43822 PTGES3P2 prostaglandin E synthase 3 pseudogene 2 pseudogene pseudogene Approved 2p23.3 02p23.3 prostaglandin E synthase 3 (cytosolic) pseudogene 2 2012-03-14 2016-06-27 2016-06-27 101929293 ENSG00000217643 OTTHUMG00000152177 NG_042890 PGOHUM00000240601 +HGNC:43823 PTGES3P3 prostaglandin E synthase 3 pseudogene 3 pseudogene pseudogene Approved 4q33 04q33 prostaglandin E synthase 3 (cytosolic) pseudogene 3 2012-03-14 2016-06-27 2016-06-27 441050 ENSG00000229204 OTTHUMG00000160905 NG_007035 PGOHUM00000245765 +HGNC:43825 PTGES3P4 prostaglandin E synthase 3 pseudogene 4 pseudogene pseudogene Approved 10q24.32 10q24.32 prostaglandin E synthase 3 (cytosolic) pseudogene 4 2012-03-14 2016-06-27 2016-06-27 106480775 ENSG00000236937 OTTHUMG00000018973 NG_043971 PGOHUM00000238907 +HGNC:43826 PTGES3P5 prostaglandin E synthase 3 pseudogene 5 pseudogene pseudogene Approved 10q25.1 10q25.1 prostaglandin E synthase 3 (cytosolic) pseudogene 5 2012-03-14 2016-06-27 2016-06-27 106480359 ENSG00000234544 OTTHUMG00000019021 NG_044738 PGOHUM00000238912 +HGNC:9600 PTGFR prostaglandin F receptor protein-coding gene gene with protein product Approved 1p31.1 01p31.1 FP prostaglandin F receptor (FP) Prostaglandin (prostanoid) receptors 207 1994-07-29 2016-01-25 2016-01-25 5737 ENSG00000122420 OTTHUMG00000009644 uc057hvr.1 AF004021 NM_000959 "CCDS686|CCDS30759" P43088 "8300593|7759114" MGI:97796 RGD:3436 PTGFR 600563 objectId:344 +HGNC:9601 PTGFRN prostaglandin F2 receptor inhibitor protein-coding gene gene with protein product Approved 1p13.1 01p13.1 "FPRP|EWI-F|CD9P-1|FLJ11001|KIAA1436|SMAP-6|CD315" prostaglandin F2 receptor negative regulator "CD molecules|V-set domain containing|Immunoglobulin like domain containing" "471|590|594" 1997-10-31 2013-01-25 2014-11-19 5738 ENSG00000134247 OTTHUMG00000012028 uc001egv.2 AB014734 NM_020440 CCDS890 Q9P2B2 8655148 MGI:1277114 RGD:3437 PTGFRN 601204 CD315 +HGNC:9602 PTGIR prostaglandin I2 (prostacyclin) receptor (IP) protein-coding gene gene with protein product Approved 19q13.32 19q13.32 IP Prostaglandin (prostanoid) receptors 207 1994-07-29 2016-07-26 5739 ENSG00000160013 OTTHUMG00000183429 uc002pex.4 XM_005259095 CCDS12686 P43119 7759114 MGI:99535 RGD:1310890 PTGIR 600022 objectId:345 +HGNC:9603 PTGIS prostaglandin I2 synthase protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "PGIS|CYP8A1" "cytochrome P450, family 8, subfamily A, polypeptide 1|prostacyclin synthase" prostaglandin I2 (prostacyclin) synthase Cytochrome P450 family 8 1006 1994-07-28 2016-09-12 2016-10-05 5740 ENSG00000124212 OTTHUMG00000033077 uc002xut.4 NM_000961 CCDS13419 Q16647 8812456 MGI:1097156 RGD:3438 Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/ PTGIS 601699 objectId:1356 5.3.99.4 +HGNC:18429 PTGR1 prostaglandin reductase 1 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 ZADH3 zinc binding alcohol dehydrogenase domain containing 3 LTB4DH leukotriene B4 12-hydroxydehydrogenase 2002-09-19 2008-06-02 2008-06-02 2016-10-05 22949 ENSG00000106853 OTTHUMG00000020493 uc004bfi.3 D49387 XR_929738 "CCDS6779|CCDS55331" Q14914 "8576264|17449869" MGI:1914353 RGD:621195 PTGR1 601274 "1.3.1.74|1.3.1.48" +HGNC:20149 PTGR2 prostaglandin reductase 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FLJ39091 ZADH1 zinc binding alcohol dehydrogenase domain containing 1 2002-12-20 2008-06-03 2008-06-02 2016-01-15 145482 ENSG00000140043 OTTHUMG00000171255 uc001xow.5 AK096410 NM_152444 CCDS9820 Q8N8N7 17449869 MGI:1916372 RGD:1310518 PTGR2 608642 +HGNC:9604 PTGS1 prostaglandin-endoperoxide synthase 1 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "COX1|PGHS-1|PTGHS" prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase) 1992-10-27 2016-03-24 2016-10-05 5742 ENSG00000095303 OTTHUMG00000020605 uc004bmg.3 M59979 XM_011518875 "CCDS6842|CCDS6843|CCDS59520|CCDS59521|CCDS75895" P23219 "2512924|1907252" MGI:97797 RGD:3439 PTGS1 176805 objectId:1375 1.14.99.1 +HGNC:9605 PTGS2 prostaglandin-endoperoxide synthase 2 protein-coding gene gene with protein product Approved 1q31.1 01q31.1 COX2 "prostaglandin G/H synthase 2|cyclooxygenase 2" prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) 1992-10-28 2016-01-25 2016-10-05 5743 ENSG00000073756 OTTHUMG00000035473 uc001gsb.4 D28235 NM_000963 CCDS1371 P35354 1380156 MGI:97798 RGD:620349 PTGS2 600262 objectId:1376 1.14.99.1 +HGNC:9606 PTH parathyroid hormone protein-coding gene gene with protein product Approved 11p15.3 11p15.3 PTH1 "parathyrin|parathormone|parathyroid hormone 1|preproparathyroid hormone|prepro-PTH" Endogenous ligands 542 2001-06-22 2016-01-15 5741 ENSG00000152266 OTTHUMG00000165785 uc057zha.1 J00301 NM_000315 CCDS7812 P01270 1672845 MGI:97799 RGD:3440 PTH 168450 118138 +HGNC:9608 PTH1R parathyroid hormone 1 receptor protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "PTHR|PTHR1" parathyroid hormone receptor 1 Parathyroid hormone receptors 270 1993-03-23 2008-11-18 2008-11-18 2016-10-05 5745 ENSG00000160801 OTTHUMG00000133515 uc003cqm.4 NM_000316 CCDS2747 Q03431 8020952 MGI:97801 RGD:3442 PTH1R 168468 118140 objectId:331 +HGNC:30828 PTH2 parathyroid hormone 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 TIP39 tuberoinfundibular 39 residues Endogenous ligands 542 2007-12-07 2014-11-19 113091 ENSG00000142538 OTTHUMG00000183165 uc002pnn.1 AY037555 NM_178449 CCDS12763 Q96A98 11861531 MGI:2152297 RGD:1559447 PTH2 608386 +HGNC:9609 PTH2R parathyroid hormone 2 receptor protein-coding gene gene with protein product Approved 2q34 02q34 PTHR2 parathyroid hormone receptor 2 Parathyroid hormone receptors 270 1996-03-19 2007-08-24 2007-08-24 2016-10-05 5746 ENSG00000144407 OTTHUMG00000132960 uc002vdb.5 BC036811 NM_005048 "CCDS2383|CCDS82565" P49190 MGI:2180917 RGD:620612 PTH2R 601469 objectId:332 +HGNC:9607 PTHLH parathyroid hormone like hormone protein-coding gene gene with protein product Approved 12p11.22 12p11.22 "PTHRP|HHM|PLP|PTHR" "osteostatin|parathyroid hormone-like hormone preproprotein|parathyroid hormone-related protein preproprotein" Endogenous ligands 542 2001-06-22 2016-07-07 2016-10-05 5744 ENSG00000087494 OTTHUMG00000169221 uc001rin.4 NM_198965 "CCDS8715|CCDS44853" P12272 2708388 MGI:97800 RGD:3441 PTHLH 168470 227063 +HGNC:9611 PTK2 protein tyrosine kinase 2 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "FAK|FADK|FAK1|PPP1R71" protein phosphatase 1, regulatory subunit 71 PTK2 protein tyrosine kinase 2 "Protein phosphatase 1 regulatory subunits|FERM domain containing" "694|1293" 1992-10-02 2013-02-18 2014-11-18 5747 ENSG00000169398 OTTHUMG00000067438 uc003yvu.4 L13616 NM_005607 "CCDS6381|CCDS56557" Q05397 8422239 MGI:95481 RGD:3443 PTK2 600758 objectId:2180 2.7.10.1 +HGNC:9612 PTK2B protein tyrosine kinase 2 beta protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "CAKB|PYK2|RAFTK|PTK|CADTK" FAK2 "protein tyrosine kinase 2 beta|PTK2B protein tyrosine kinase 2 beta" "Minor histocompatibility antigens|FERM domain containing" "870|1293" 1998-06-22 2013-02-18 2016-10-05 2185 ENSG00000120899 OTTHUMG00000102082 uc003xfn.3 U33284 NM_004103 "CCDS6057|CCDS6058" Q14289 "7544443|7499242" MGI:104908 RGD:628758 PTK2B 601212 objectId:2181 +HGNC:9614 PTK3B entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-07-10 +HGNC:9617 PTK6 protein tyrosine kinase 6 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 BRK PTK6 protein tyrosine kinase 6 SH2 domain containing 741 1992-10-02 2013-02-18 2016-10-05 5753 ENSG00000101213 OTTHUMG00000033039 uc002yfg.5 U61412 XM_017027982 "CCDS13524|CCDS74750" Q13882 "8247543|9284935" MGI:99683 RGD:1309098 PTK6 602004 objectId:2182 2.7.10.1 +HGNC:9618 PTK7 protein tyrosine kinase 7 (inactive) protein-coding gene gene with protein product Approved 6p21.1 06p21.1 CCK4 colon carcinoma kinase 4 "PTK7 protein tyrosine kinase 7|protein tyrosine kinase 7" "Receptor Tyrosine Kinases|I-set domain containing|Immunoglobulin like domain containing" "321|593|594" 1992-10-02 2014-12-19 2016-10-05 5754 ENSG00000112655 OTTHUMG00000014721 uc003oub.3 AF447176 NM_002821 "CCDS4884|CCDS4885|CCDS4886|CCDS4887|CCDS59021" Q13308 7478540 MGI:1918711 RGD:1310472 PTK7 601890 objectId:1848 2.7.10.1 +HGNC:9622 PTLAH patella aplasia-hypoplasia phenotype phenotype only Approved 17q21-q22 17q21-q22 FPAH 1998-12-23 1999-08-11 8830 10417287 168860 +HGNC:9623 PTMA prothymosin, alpha protein-coding gene gene with protein product Approved 2q37.1 02q37.1 gene sequence 28 TMSA prothymosin, alpha (gene sequence 28) 1991-07-15 2008-04-03 2015-09-07 5757 ENSG00000187514 OTTHUMG00000153810 uc002vsc.5 XM_011511522 "CCDS42833|CCDS46541" P06454 1612591 MGI:97803 RGD:61829 PTMA 188390 +HGNC:9624 PTMAP1 prothymosin, alpha pseudogene 1 pseudogene pseudogene Approved 6p21.33 06p21.33 Em:AB023049.6 prothymosin, alpha pseudogene 1 (gene sequence 26) 1991-12-11 2014-01-20 2014-01-20 5758 ENSG00000228415 OTTHUMG00000031235 S41692 NG_004833 1612591 +HGNC:9625 PTMAP2 prothymosin, alpha pseudogene 2 pseudogene pseudogene Approved 5q23.1 05q23.1 prothymosin, alpha pseudogene 2 (gene sequence 32) 1991-12-11 2014-01-20 2014-01-20 5759 ENSG00000197744 OTTHUMG00000162960 S41694 NG_002765 1612591 +HGNC:9626 PTMAP3 prothymosin, alpha pseudogene 3 pseudogene pseudogene Approved 20p11.23 20p11.23 prothymosin, alpha pseudogene 3 (gene sequence 34) 1991-12-11 2014-01-20 2014-01-20 5760 ENSG00000218902 OTTHUMG00000031954 S41695 NG_001180 1612591 +HGNC:9627 PTMAP4 prothymosin, alpha pseudogene 4 pseudogene pseudogene Approved 12p13.31 12p13.31 prothymosin, alpha pseudogene 4 (gene sequence 112) 1991-12-11 2014-01-20 2014-01-20 5761 ENSG00000231503 OTTHUMG00000168331 S38624 NG_001181 1612591 +HGNC:9628 PTMAP5 prothymosin, alpha pseudogene 5 pseudogene pseudogene Approved 13q31.1 13q31.1 gene sequence 150 prothymosin, alpha pseudogene 5 (gene sequence 150) 1991-12-11 2008-04-03 2016-10-05 150928 ENSG00000214182 OTTHUMG00000017147 S38627 NG_004798 1612591 +HGNC:16573 PTMAP6 prothymosin, alpha pseudogene 6 pseudogene pseudogene Approved 20q13.31 20q13.31 dJ539E24.2 2001-09-17 2011-07-27 170542 ENSG00000237000 OTTHUMG00000032804 AL121920 NG_001051 +HGNC:20031 PTMAP7 prothymosin, alpha pseudogene 7 pseudogene pseudogene Approved 14q32.12 14q32.12 2003-01-13 2014-11-19 326626 NG_002608 +HGNC:42437 PTMAP8 prothymosin, alpha pseudogene 8 pseudogene pseudogene Approved 3q13.31 03q13.31 2011-07-27 2011-07-27 2014-11-18 728873 ENSG00000243014 OTTHUMG00000159348 NG_031895 +HGNC:9629 PTMS parathymosin protein-coding gene gene with protein product Approved 12p13 12p13 ParaT 1990-09-10 2015-09-07 5763 ENSG00000159335 OTTHUMG00000169196 uc001qqq.3 NM_001330333 "CCDS8560|CCDS81656" P20962 15716277 MGI:1916452 RGD:621529 PTMS 168440 +HGNC:9630 PTN pleiotrophin protein-coding gene gene with protein product Approved 7q33 07q33 "HBNF|HBGF8" heparin binding growth factor 8 NEGF1 neurite growth-promoting factor 1 Endogenous ligands 542 1993-06-22 2008-07-31 2014-11-19 5764 ENSG00000105894 OTTHUMG00000155709 uc003vtq.4 M57399 NM_002825 CCDS5844 P21246 "1457401|1768439" MGI:97804 RGD:3444 PTN 162095 +HGNC:9631 PTOS1 ptosis, congenital 1 (autosomal dominant) phenotype phenotype only Approved 1p34.1-p32 01p34.1-p32 1997-07-01 1997-07-01 5765 9150162 178300 +HGNC:9632 PTOV1 prostate tumor overexpressed 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 2000-05-18 2008-09-12 2014-11-19 53635 ENSG00000104960 OTTHUMG00000183162 uc002pqf.2 AF238381 NM_017432 "CCDS12782|CCDS82379" Q86YD1 "12598323|15713644" MGI:1933946 RGD:1306977 PTOV1 610195 +HGNC:44174 PTOV1-AS1 PTOV1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.33 19q13.33 PTOV1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100506033 ENSG00000268006 OTTHUMG00000183257 uc002ppy.5 BC043359 NR_040037 +HGNC:51284 PTOV1-AS2 PTOV1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 19q13.33 19q13.33 2014-08-28 2015-01-08 101928378 ENSG00000269352 OTTHUMG00000183259 NR_110730 +HGNC:9634 PTP4A1 protein tyrosine phosphatase type IVA, member 1 protein-coding gene gene with protein product Approved 6q12 06q12 "PTPCAAX1|PRL-1" Protein tyrosine phosphatases type IVA 899 1998-09-02 2014-11-19 7803 ENSG00000112245 OTTHUMG00000014949 uc003pel.5 U48296 XM_017011270 CCDS4965 Q93096 9642300 MGI:1277096 RGD:61970 PTP4A1 601585 +HGNC:41928 PTP4A1P1 protein tyrosine phosphatase type IVA, member 1 pseudogene 1 pseudogene pseudogene Approved 2q24.1 02q24.1 2011-05-19 2011-05-19 100421652 ENSG00000231158 OTTHUMG00000153916 NG_023744 PGOHUM00000240994 +HGNC:41929 PTP4A1P2 protein tyrosine phosphatase type IVA, member 1 pseudogene 2 pseudogene pseudogene Approved 12q24.33 12q24.33 2011-05-19 2014-11-19 100499563 ENSG00000255807 OTTHUMG00000167938 NG_027516 PGOHUM00000264210 +HGNC:41930 PTP4A1P3 protein tyrosine phosphatase type IVA, member 1 pseudogene 3 pseudogene pseudogene Approved 7q21.13 07q21.13 2011-05-19 2014-11-19 100861469 ENSG00000226254 OTTHUMG00000033517 NG_032021 PGOHUM00000233468 +HGNC:41931 PTP4A1P4 protein tyrosine phosphatase type IVA, member 1 pseudogene 4 pseudogene pseudogene Approved 5q14.3 05q14.3 2011-05-19 2014-11-18 100129564 ENSG00000250359 OTTHUMG00000162586 NG_029015 PGOHUM00000235686 +HGNC:41932 PTP4A1P5 protein tyrosine phosphatase type IVA, member 1 pseudogene 5 pseudogene pseudogene Approved Xp21.3 Xp21.3 2011-05-19 2014-11-18 100289380 ENSG00000235642 OTTHUMG00000021299 NG_022587 PGOHUM00000241217 +HGNC:41933 PTP4A1P6 protein tyrosine phosphatase type IVA, member 1 pseudogene 6 pseudogene pseudogene Approved 11q14.2 11q14.2 2011-05-19 2014-11-18 100129472 ENSG00000254727 OTTHUMG00000167215 NG_028980 PGOHUM00000242835 +HGNC:41934 PTP4A1P7 protein tyrosine phosphatase type IVA, member 1 pseudogene 7 pseudogene pseudogene Approved 1q25.2 01q25.2 2011-05-19 2014-11-18 100421681 ENSG00000237514 OTTHUMG00000035043 NG_027020 PGOHUM00000244350 +HGNC:9635 PTP4A2 protein tyrosine phosphatase type IVA, member 2 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "HU-PP-1|PTPCAAX2|OV-1|ptp-IV1a|PRL-2" PTP4A Protein tyrosine phosphatases type IVA 899 1996-03-14 2016-10-05 8073 ENSG00000184007 OTTHUMG00000003801 uc001bty.2 L48723 NM_080391 "CCDS348|CCDS53292|CCDS59193" Q12974 "8661118|9514946" MGI:1277117 RGD:619786 PTP4A2 601584 +HGNC:9637 PTP4A2P1 protein tyrosine phosphatase type IVA, member 2 pseudogene 1 pseudogene pseudogene Approved 17q21 17q21 h-PRL-1 PTP4AP1 protein tyrosine phosphatase type IVA pseudogene 1 1996-03-14 2009-12-03 2009-12-03 2009-12-03 5767 ENSG00000267185 OTTHUMG00000180239 NG_004085 "8661118|8931711" +HGNC:9638 PTP4A2P2 protein tyrosine phosphatase type IVA, member 2 pseudogene 2 pseudogene pseudogene Approved 11q24-q25 11q24-q25 PTP4AP2 protein tyrosine phosphatase type IVA pseudogene 2 1996-03-14 2009-12-03 2009-12-03 2009-12-03 5769 ENSG00000254481 OTTHUMG00000167127 L48937 NG_001182 "8661118|8931711" +HGNC:9636 PTP4A3 protein tyrosine phosphatase type IVA, member 3 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "PRL-3|PRL-R|PRL3" Protein tyrosine phosphatases type IVA 899 1999-09-09 2011-06-09 11156 ENSG00000184489 OTTHUMG00000164490 uc010mes.5 AF041434 NM_032611 "CCDS6382|CCDS6383" O75365 MGI:1277098 RGD:1308687 PTP4A3 606449 +HGNC:9308 PTPA protein phosphatase 2 phosphatase activator protein-coding gene gene with protein product Approved 9q34.11 09q34.11 PR53 "phosphotyrosyl phosphatase activator|PP2A phosphatase activator" PPP2R4 "protein phosphatase 2A, regulatory subunit B' (PR 53)|protein phosphatase 2A activator, regulatory subunit 4|protein phosphatase 2 regulatory subunit 4" "Cyclophilin peptidylprolyl isomerases|Protein phosphatase 2 modulatory subunits" "909|1265" 1994-06-09 2016-05-27 2016-05-27 2016-10-05 5524 ENSG00000119383 OTTHUMG00000020774 uc004bxl.3 X73478 NM_021131 "CCDS6920|CCDS65156|CCDS75917" Q15257 "8530035|16380387" MGI:1346006 RGD:1308354 600756 +HGNC:30184 PTPDC1 protein tyrosine phosphatase domain containing 1 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 "PTP9Q22|FLJ37312" protein tyrosine phosphatase PTP9Q22 CDC14 phosphatases 900 2004-04-22 2014-11-19 138639 ENSG00000158079 OTTHUMG00000020258 uc010mrj.3 BC051654 "NM_177995|NM_152422" "CCDS6707|CCDS6708|CCDS75860" A2A3K4 14702039 MGI:2145430 RGD:1307698 PTPDC1 +HGNC:9641 PTPLC entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-12-16 +HGNC:26965 PTPMT1 protein tyrosine phosphatase, mitochondrial 1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "PLIP|DUSP23|MOSP" "Atypical dual specificity phosphatases|Phosphoinositide phosphatases" "896|1079" 2005-03-15 2015-08-07 114971 ENSG00000110536 OTTHUMG00000166892 uc001nfs.5 BC014048 NM_175732 "CCDS41643|CCDS44593" Q8WUK0 12477932 MGI:1913711 RGD:1589783 PTPMT1 609538 "3.1.3.16|3.1.3.27|3.1.3.48" +HGNC:9642 PTPN1 protein tyrosine phosphatase, non-receptor type 1 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 PTP1B Protein tyrosine phosphatases, non-receptor type 812 1991-09-13 2016-10-05 5770 ENSG00000196396 OTTHUMG00000032729 uc002xvl.5 NM_002827 "CCDS13430|CCDS63309" P18031 2164224 MGI:97805 RGD:61965 PTPN1 176885 +HGNC:9650 PTPN2 protein tyrosine phosphatase, non-receptor type 2 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "TCELLPTP|TC-PTP|TCPTP" PTPT Protein tyrosine phosphatases, non-receptor type 812 1991-09-13 2016-10-05 5771 ENSG00000175354 OTTHUMG00000131702 uc002krp.4 M25393 "NM_002828|NM_080422|NM_080423" "CCDS11863|CCDS11864|CCDS11865|CCDS59306|CCDS77155" P17706 2164224 MGI:97806 RGD:620710 PTPN2 176887 306416 +HGNC:9653 PTPN2P1 protein tyrosine phosphatase, non-receptor type 2 pseudogene 1 pseudogene pseudogene Approved 1q25.2 01q25.2 "PTPN2P|PTPTP1" protein tyrosine phosphatase, non-receptor type 2 (pseudogene 1) 1991-09-13 2011-03-23 2014-11-19 646981 ENSG00000228196 OTTHUMG00000035074 NG_006956 8325634 PGOHUM00000244353 +HGNC:9654 PTPN2P2 protein tyrosine phosphatase, non-receptor type 2 pseudogene 2 pseudogene pseudogene Approved 13q12.3 13q12.3 protein tyrosine phosphatase, non-receptor type 2 (pseudogene 2) 1993-03-03 2011-03-23 2014-11-19 646758 ENSG00000224117 OTTHUMG00000016674 NG_011398 8325634 PGOHUM00000248558 +HGNC:9655 PTPN3 protein tyrosine phosphatase, non-receptor type 3 protein-coding gene gene with protein product Approved 9q31 09q31 PTPH1 "Protein tyrosine phosphatases, non-receptor type|PDZ domain containing|FERM domain containing" "812|1220|1293" 1992-02-12 2015-08-25 5774 ENSG00000070159 OTTHUMG00000020475 uc004bed.3 XM_011518888 "CCDS6776|CCDS48000|CCDS48001" P26045 1648725 MGI:105307 RGD:1311363 PTPN3 176877 402744 +HGNC:9656 PTPN4 protein tyrosine phosphatase, non-receptor type 4 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 PTPMEG protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte) "Protein tyrosine phosphatases, non-receptor type|PDZ domain containing|FERM domain containing" "812|1220|1293" 1992-02-12 2016-01-11 2016-01-11 5775 ENSG00000088179 OTTHUMG00000131436 uc002tmf.3 XM_017004596 CCDS2129 P29074 1648233 MGI:1099792 RGD:620712 PTPN4 176878 +HGNC:9657 PTPN5 protein tyrosine phosphatase, non-receptor type 5 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "STEP|PTPSTEP|STEP61" striatal-enriched protein tyrosine phosphatase protein tyrosine phosphatase, non-receptor type 5 (striatum-enriched) Protein tyrosine phosphatases, non-receptor type 812 1992-02-12 2016-01-11 2016-01-11 84867 ENSG00000110786 OTTHUMG00000134304 uc001mpd.5 BC064807 NM_001039970 "CCDS7845|CCDS41626|CCDS60746" P54829 1714595 MGI:97807 RGD:3448 PTPN5 176879 +HGNC:9658 PTPN6 protein tyrosine phosphatase, non-receptor type 6 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "HCP|HCPH|PTP-1C|SHP-1|SHP1" "SH2 domain containing|Protein tyrosine phosphatases, non-receptor type" "741|812" 1992-02-12 2014-11-19 5777 ENSG00000111679 OTTHUMG00000168518 uc001qsa.1 NM_002831 "CCDS41744|CCDS44820|CCDS44821" P29350 1639416 MGI:96055 RGD:620660 PTPN6 176883 +HGNC:9659 PTPN7 protein tyrosine phosphatase, non-receptor type 7 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "HEPTP|LC-PTP" Protein tyrosine phosphatases, non-receptor type 812 1993-03-03 2016-04-25 5778 ENSG00000143851 OTTHUMG00000035931 uc001gxm.3 BC001746 NM_002832 "CCDS1422|CCDS1423" P35236 1510684 MGI:2156893 RGD:708516 PTPN7 176889 +HGNC:9661 PTPN9 protein tyrosine phosphatase, non-receptor type 9 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 MEG2 Protein tyrosine phosphatases, non-receptor type 812 1993-03-03 2016-10-05 5780 ENSG00000169410 OTTHUMG00000142838 uc002bal.5 NM_002833 CCDS10280 P43378 1557404 MGI:1928376 RGD:628726 PTPN9 600768 +HGNC:9644 PTPN11 protein tyrosine phosphatase, non-receptor type 11 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "BPTP3|SH-PTP2|SHP-2|PTP2C|SHP2" NS1 Noonan syndrome 1 "SH2 domain containing|Protein tyrosine phosphatases, non-receptor type" "741|812" 1993-03-03 2008-07-31 2016-10-12 5781 ENSG00000179295 OTTHUMG00000134334 uc001ttx.4 D13540 XM_006719526 "CCDS9163|CCDS58280|CCDS81741" Q06124 "7894486|1280823" MGI:99511 RGD:3447 LRG_614|http://www.lrg-sequence.org/LRG/LRG_614 PTPN11 176876 118143 +HGNC:9645 PTPN12 protein tyrosine phosphatase, non-receptor type 12 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "PTPG1|PTP-PEST" Protein tyrosine phosphatases, non-receptor type 812 1993-03-03 2015-08-25 5782 ENSG00000127947 OTTHUMG00000023501 uc003ugh.3 XM_006716073 "CCDS5592|CCDS47619|CCDS47620" Q05209 7509295 MGI:104673 RGD:620894 PTPN12 600079 +HGNC:9646 PTPN13 protein tyrosine phosphatase, non-receptor type 13 protein-coding gene gene with protein product Approved 4q21.3 04q21.3 "PTP1E|PTP-BAS|PTPL1|PTP-BL" APO-1/CD95 (Fas)-associated phosphatase protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) "Protein tyrosine phosphatases, non-receptor type|PDZ domain containing|FERM domain containing" "812|1220|1293" 1995-02-17 2016-01-11 2016-01-11 5783 ENSG00000163629 OTTHUMG00000160968 uc003hpz.4 XM_017008511 "CCDS47093|CCDS47094|CCDS47095|CCDS47096" Q12923 8287977 MGI:103293 RGD:1563360 PTPN13 600267 +HGNC:9647 PTPN14 protein tyrosine phosphatase, non-receptor type 14 protein-coding gene gene with protein product Approved 1q32.3-q41 01q32.3-q41 PEZ "Protein tyrosine phosphatases, non-receptor type|FERM domain containing" "812|1293" 1995-02-22 2016-10-11 5784 ENSG00000152104 OTTHUMG00000037039 uc001hkk.3 X82676 NM_005401 CCDS1514 Q15678 7733990 MGI:102467 RGD:1307885 PTPN14 603155 +HGNC:9648 PTPN17 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-06-09 +HGNC:9649 PTPN18 protein tyrosine phosphatase, non-receptor type 18 protein-coding gene gene with protein product Approved 2q21.1 02q21.1 BDP1 protein tyrosine phosphatase, non-receptor type 18 (brain-derived) Protein tyrosine phosphatases, non-receptor type 812 2000-01-04 2016-01-11 2016-10-05 26469 ENSG00000072135 OTTHUMG00000131630 uc002trc.3 X79568 XM_006712416 "CCDS2161|CCDS46410" Q99952 8950995 MGI:108410 RGD:1311586 PTPN18 606587 +HGNC:23423 PTPN20 protein tyrosine phosphatase, non-receptor type 20 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "bA42B19.1|DKFZP566K0524|bA142I17.1|CT126" "PTPN20A|PTPN20B" "protein tyrosine phosphatase, non-receptor type 20A|protein tyrosine phosphatase, non-receptor type 20B" Protein tyrosine phosphatases, non-receptor type 812 2004-05-27 2015-03-02 2015-03-11 2015-08-25 26095 ENSG00000204179 OTTHUMG00000018094 NM_015605 "CCDS73105|CCDS73106|CCDS73107|CCDS73108|CCDS73109|CCDS73110|CCDS73111|CCDS73114|CCDS73115|CCDS73116|CCDS81454|CCDS81456" Q4JDL3 15790311 MGI:1196295 RGD:1309812 "610630|610631" +HGNC:23424 PTPN20CP protein tyrosine phosphatase, non-receptor type 20C, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 bA164N7.3 PTPN20C protein tyrosine phosphatase, non-receptor type 20C Protein tyrosine phosphatases, non-receptor type 812 2004-05-27 2013-04-02 2013-04-02 2015-02-03 653045 ENSG00000278561 OTTHUMG00000018166 NG_005691 +HGNC:9651 PTPN21 protein tyrosine phosphatase, non-receptor type 21 protein-coding gene gene with protein product Approved 14q31 14q31 "PTPD1|PTPRL10" "Protein tyrosine phosphatases, non-receptor type|FERM domain containing" "812|1293" 1999-09-07 2011-06-09 11099 ENSG00000070778 OTTHUMG00000170766 uc001xwv.5 X79510 XM_005267287 CCDS9884 Q16825 7519780 MGI:1344406 RGD:620216 PTPN21 603271 +HGNC:9652 PTPN22 protein tyrosine phosphatase, non-receptor type 22 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "Lyp|Lyp1|Lyp2" PTPN8 "protein tyrosine phosphatase, non-receptor type 8|protein tyrosine phosphatase, non-receptor type 22 (lymphoid)" Protein tyrosine phosphatases, non-receptor type 812 1999-11-26 2016-01-11 2016-04-25 26191 ENSG00000134242 OTTHUMG00000011936 uc001eds.4 AF001846 NM_015967 "CCDS76191|CCDS863|CCDS864" Q9Y2R2 "10068674|1373816" MGI:107170 RGD:1307992 PTPN22 600716 317445 +HGNC:14406 PTPN23 protein tyrosine phosphatase, non-receptor type 23 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "DKFZP564F0923|KIAA1471|HD-PTP" Protein tyrosine phosphatases, non-receptor type 812 2001-02-15 2016-10-05 25930 ENSG00000076201 OTTHUMG00000133520 uc003crf.2 AB025194 NM_015466 CCDS2754 Q9H3S7 11095967 MGI:2144837 RGD:619892 PTPN23 606584 +HGNC:9664 PTPRA protein tyrosine phosphatase, receptor type A protein-coding gene gene with protein product Approved 20p13 20p13 "LRP|HLPR|HPTPA|RPTPA" "PTPRL2|PTPA" Protein tyrosine phosphatases, receptor type 813 1990-10-02 2016-01-06 2016-01-06 5786 ENSG00000132670 OTTHUMG00000031718 uc002whk.4 NM_080840 "CCDS13038|CCDS13039" P18433 "2172030|2169617" MGI:97808 RGD:3450 PTPRA 176884 objectId:1850 +HGNC:9665 PTPRB protein tyrosine phosphatase, receptor type B protein-coding gene gene with protein product Approved 12q15 12q15 PTPB "Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "555|813" 1991-05-15 2016-01-06 2016-01-15 5787 ENSG00000127329 OTTHUMG00000169499 uc001swc.6 X54131 XM_017019723 "CCDS44943|CCDS44944|CCDS55845|CCDS55846|CCDS81713" P23467 2169617 MGI:97809 RGD:1305922 PTPRB 176882 objectId:1851 +HGNC:9666 PTPRC protein tyrosine phosphatase, receptor type C protein-coding gene gene with protein product Approved 1q31.3-q32.1 01q31.3-q32.1 "LCA|T200|GP180" CD45 "CD molecules|Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "471|555|813" 1986-01-01 2016-01-06 2016-10-12 5788 ENSG00000081237 OTTHUMG00000035702 uc001gur.3 Y00062 NM_002838 "CCDS1397|CCDS1398|CCDS44291" P08575 2169617 MGI:97810 RGD:3451 "PTPRCbase: Mutation registry for CD45 deficiency|http://structure.bmc.lu.se/idbase/PTPRCbase/|LRG_95|http://www.lrg-sequence.org/LRG/LRG_95" PTPRC 151460 118151 objectId:1852 CD45 +HGNC:9667 PTPRCAP protein tyrosine phosphatase, receptor type C associated protein protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "LPAP|CD45-AP" 1996-04-22 2016-01-06 2016-01-06 5790 ENSG00000213402 OTTHUMG00000150325 uc001oli.2 NM_005608 CCDS8163 Q14761 MGI:97811 RGD:1559601 PTPRCAP 601577 +HGNC:9668 PTPRD protein tyrosine phosphatase, receptor type D protein-coding gene gene with protein product Approved 9p24.1-p23 09p24.1-p23 "PTPD|HPTP" "Fibronectin type III domain containing|I-set domain containing|Protein tyrosine phosphatases, receptor type" "555|593|813" 1992-02-12 2016-01-06 2016-10-11 5789 ENSG00000153707 OTTHUMG00000021005 uc064scf.1 X54133 XM_017014958 "CCDS43786|CCDS55288|CCDS55289|CCDS55290|CCDS6472|CCDS75813" P23468 "7896816|8355697" MGI:97812 RGD:1561090 PTPRD 601598 objectId:1853 +HGNC:49753 PTPRD-AS1 PTPRD antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p24.1 09p24.1 2014-02-13 2014-02-13 101929407 ENSG00000225706 OTTHUMG00000019543 AK094342 NR_121599 +HGNC:49754 PTPRD-AS2 PTPRD antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 9p23 09p23 2014-02-13 2014-02-13 101929428 ENSG00000226717 OTTHUMG00000019549 BC045688 NR_110696 +HGNC:9669 PTPRE protein tyrosine phosphatase, receptor type E protein-coding gene gene with protein product Approved 10q26.2 10q26.2 PTPE Protein tyrosine phosphatases, receptor type 813 1992-02-12 2016-01-06 2016-10-05 5791 ENSG00000132334 OTTHUMG00000019254 uc001lkb.4 AF406557 NM_001323355 "CCDS7657|CCDS7658" P23469 8595895 MGI:97813 RGD:620771 PTPRE 600926 objectId:1854 +HGNC:9670 PTPRF protein tyrosine phosphatase, receptor type F protein-coding gene gene with protein product Approved 1p34.2 01p34.2 LAR "Fibronectin type III domain containing|I-set domain containing|Protein tyrosine phosphatases, receptor type" "555|593|813" 1989-06-30 2016-01-06 2016-10-05 5792 ENSG00000142949 OTTHUMG00000007501 uc001cjs.4 Y00815 XM_005271079 "CCDS489|CCDS490" P10586 7558042 MGI:102695 RGD:3453 PTPRF 179590 410737 objectId:1855 +HGNC:9671 PTPRG protein tyrosine phosphatase, receptor type G protein-coding gene gene with protein product Approved 3p14.2 03p14.2 RPTPG PTPG "Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "555|813" 1991-05-15 2016-01-06 2016-10-05 5793 ENSG00000144724 OTTHUMG00000158660 uc003dlb.4 L09247 NM_002841 CCDS2895 P23470 1711217 MGI:97814 RGD:620774 PTPRG 176886 objectId:1856 +HGNC:44638 PTPRG-AS1 PTPRG antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.2 03p14.2 2012-11-23 2012-11-23 100506994 ENSG00000241472 OTTHUMG00000158657 uc062lcp.1 "AK308660|BC041886" NR_038281 +HGNC:9672 PTPRH protein tyrosine phosphatase, receptor type H protein-coding gene gene with protein product Approved 19q13.4 19q13.4 SAP-1 "Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "555|813" 1994-09-14 2016-01-06 2016-01-06 5794 ENSG00000080031 OTTHUMG00000180701 uc002qjq.4 XM_017027056 "CCDS33110|CCDS54321" Q9HD43 8294459 MGI:3026877 RGD:620553 PTPRH 602510 objectId:1857 +HGNC:9673 PTPRJ protein tyrosine phosphatase, receptor type J protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "DEP1|HPTPeta|CD148" "CD molecules|Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "471|555|813" 1994-09-14 2016-01-06 2016-01-06 5795 ENSG00000149177 OTTHUMG00000166573 uc001ngp.5 U10886 XM_017018083 "CCDS7945|CCDS44596" Q12913 "7937872|7994032" MGI:104574 RGD:3454 PTPRJ 600925 objectId:1858 CD148 +HGNC:50634 PTPRJ-AS1 PTPRJ antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p11.2 11p11.2 2014-06-01 2014-06-02 104326192 ENSG00000254879 OTTHUMG00000166634 AI365468 23840844 MGI:1918408 +HGNC:9674 PTPRK protein tyrosine phosphatase, receptor type K protein-coding gene gene with protein product Approved 6q22.33 06q22.33 R-PTP-kappa "Fibronectin type III domain containing|Immunoglobulin like domain containing|Protein tyrosine phosphatases, receptor type" "555|594|813" 1998-02-09 2016-01-06 2016-10-05 5796 ENSG00000152894 OTTHUMG00000015536 uc003qbj.4 L77886 XM_011536014 "CCDS5137|CCDS47473|CCDS75517|CCDS78179" Q15262 "9047348|8663237" MGI:103310 RGD:619706 PTPRK 602545 objectId:1859 +HGNC:9675 PTPRM protein tyrosine phosphatase, receptor type M protein-coding gene gene with protein product Approved 18p11.23 18p11.23 "RPTPU|hR-PTPu" PTPRL1 "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing|Protein tyrosine phosphatases, receptor type" "555|593|594|813" 1991-08-23 2016-01-06 2016-10-05 5797 ENSG00000173482 OTTHUMG00000131575 uc002knn.5 X58288 XM_017025894 "CCDS11840|CCDS58613" P28827 "1655529|8404049" MGI:102694 RGD:620776 PTPRM 176888 objectId:1860 +HGNC:9676 PTPRN protein tyrosine phosphatase, receptor type N protein-coding gene gene with protein product Approved 2q35 02q35 IA-2 Protein tyrosine phosphatases, receptor type 813 1995-02-17 2016-01-06 2016-10-05 5798 ENSG00000054356 OTTHUMG00000133129 uc002vkz.3 XM_017004609 "CCDS2440|CCDS56167|CCDS56168" Q16849 8024693 MGI:102765 RGD:620777 PTPRN 601773 objectId:1861 +HGNC:9677 PTPRN2 protein tyrosine phosphatase, receptor type N2 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "KIAA0387|phogrin|ICAAR|IA-2beta" IAR PTPRP protein tyrosine phosphatase, receptor type, N polypeptide 2 Protein tyrosine phosphatases, receptor type 813 1998-03-23 2016-01-06 2016-10-05 5799 ENSG00000155093 OTTHUMG00000152646 uc003wnp.4 AB002385 XM_017012475 "CCDS5947|CCDS5948|CCDS5949|CCDS78294" Q92932 "8954911|9220540" MGI:107418 RGD:61904 PTPRN2 601698 objectId:1862 +HGNC:9678 PTPRO protein tyrosine phosphatase, receptor type O protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "PTPU2|GLEPP1|PTP-U2|PTP-oc|NPHS6" osteoclastic transmembrane protein-tyrosine phosphatase "Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "555|813" 1995-02-22 2016-01-06 2016-10-05 5800 ENSG00000151490 OTTHUMG00000168786 uc001rcv.3 U20489 XR_931316 "CCDS8674|CCDS8675|CCDS44837|CCDS53754" Q16827 "7519601|7665166|21722858" MGI:1097152 RGD:62068 PTPRO 600579 270424 objectId:1863 +HGNC:9679 PTPRQ protein tyrosine phosphatase, receptor type Q protein-coding gene gene with protein product Approved 12q21.31 12q21.31 DFNB84 deafness, autosomal recessive 84 "Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "555|813" 1998-03-24 2016-01-06 2016-01-06 374462 ENSG00000139304 OTTHUMG00000170171 uc031zgj.2 AF169351 NM_001145026 CCDS73501 Q9UMZ3 20346435 MGI:1096349 RGD:620779 PTPRQ 603317 227397 objectId:1864 +HGNC:9680 PTPRR protein tyrosine phosphatase, receptor type R protein-coding gene gene with protein product Approved 12q15 12q15 "PTPBR7|PTP-SL|EC-PTP|PCPTP1" PTPRQ Protein tyrosine phosphatases, receptor type 813 1999-10-28 2016-01-06 2016-01-06 5801 ENSG00000153233 OTTHUMG00000169502 uc001swi.3 D64053 NM_002849 "CCDS8998|CCDS44945|CCDS55847|CCDS55848" Q15256 "7557444|10393441" MGI:109559 RGD:620780 PTPRR 602853 objectId:1865 +HGNC:9681 PTPRS protein tyrosine phosphatase, receptor type S protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "Fibronectin type III domain containing|I-set domain containing|Protein tyrosine phosphatases, receptor type" "555|593|813" 1995-04-27 2016-01-06 2016-07-25 5802 ENSG00000105426 OTTHUMG00000180325 uc002mbw.3 U35234 XM_017027065 "CCDS12139|CCDS12140|CCDS45930|CCDS74265" Q13332 "8954782|8524829" MGI:97815 RGD:3452 PTPRS 601576 objectId:1866 +HGNC:9682 PTPRT protein tyrosine phosphatase, receptor type T protein-coding gene gene with protein product Approved 20q12-q13.11 20q12-q13.11 "RPTPrho|KIAA0283" "Fibronectin type III domain containing|Immunoglobulin like domain containing|Protein tyrosine phosphatases, receptor type" "555|594|813" 1999-08-26 2016-01-06 2016-10-11 11122 ENSG00000196090 OTTHUMG00000033040 uc061xcb.1 AF043644 XM_017027611 "CCDS42874|CCDS68127" O14522 "9486824|9602027" MGI:1321152 RGD:1309653 PTPRT 608712 objectId:1867 +HGNC:9683 PTPRU protein tyrosine phosphatase, receptor type U protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "PTPRO|hPTP-J|PCP-2|FMI|PTP" pi R-PTP-Psi "Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "555|813" 1999-10-28 2016-01-06 2016-04-25 10076 ENSG00000060656 OTTHUMG00000003699 uc001bru.4 U71075 XM_016999992 "CCDS334|CCDS335|CCDS44098|CCDS53290" Q92729 "8700514|9434160" MGI:1321151 RGD:620782 PTPRU 602454 objectId:1868 +HGNC:13421 PTPRVP protein tyrosine phosphatase, receptor type V, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 "OST-PTP|ESP" PTPRV Protein tyrosine phosphatases, receptor type 813 2005-06-07 2010-03-16 2016-01-06 2016-01-06 148713 ENSG00000243323 OTTHUMG00000040524 AJ629456 XM_086287 15358244 MGI:108027 +HGNC:9685 PTPRZ1 protein tyrosine phosphatase, receptor type Z1 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 "PTP18|RPTPB|phosphacan" "PTPZ|PTPRZ" protein tyrosine phosphatase, receptor-type, Z polypeptide 1 "Fibronectin type III domain containing|Protein tyrosine phosphatases, receptor type" "555|813" 1991-05-15 2016-01-06 2016-10-05 5803 ENSG00000106278 OTTHUMG00000157057 uc003vjy.4 M93426 NM_002851 "CCDS34740|CCDS56505" P23471 "7736789|8387522" MGI:97816 RGD:3455 PTPRZ1 176891 objectId:1869 +HGNC:9686 PTPRZ2 protein tyrosine phosphatase, receptor type, Z2 other unknown Approved 1p36.3 01p36.3 "HTPZP2|PTPRZ" protein tyrosine phosphatase, receptor-type, Z polypeptide 2 1997-08-15 2016-01-06 2016-01-06 5804 "9653645|1323835" 604008 +HGNC:9688 PTRF polymerase I and transcript release factor protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "cavin-1|CAVIN1" Cavins 1326 1998-09-21 2016-03-16 284119 ENSG00000177469 OTTHUMG00000180137 uc002hzo.4 AF000421 NM_012232 CCDS11425 Q6NZI2 9582279 MGI:1277968 RGD:1307685 Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=PTRF PTRF 603198 227086 +HGNC:27039 PTRH1 peptidyl-tRNA hydrolase 1 homolog protein-coding gene gene with protein product Approved 9q34.11 09q34.11 PTH1 C9orf115 "chromosome 9 open reading frame 115|peptidyl-tRNA hydrolase 1 homolog (S. cerevisiae)" 2004-03-25 2006-02-13 2015-07-09 2015-07-09 138428 ENSG00000187024 OTTHUMG00000020710 uc011mah.4 AK090922 NM_001002913 CCDS35147 Q86Y79 MGI:1913779 RGD:1310165 PTRH1 +HGNC:24265 PTRH2 peptidyl-tRNA hydrolase 2 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "BIT1|CGI-147|PTH2|CFAP37" "Bcl-2 inhibitor of transcription|cilia and flagella associated protein 37" 2006-02-22 2016-10-05 51651 ENSG00000141378 OTTHUMG00000154532 uc002ixt.4 AF151905 NM_016077 "CCDS11618|CCDS77076" Q9Y3E5 "10810093|15006356|14660562" MGI:2444848 RGD:1306819 PTRH2 608625 457522 +HGNC:33782 PTRHD1 peptidyl-tRNA hydrolase domain containing 1 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 LOC391356 C2orf79 chromosome 2 open reading frame 79 2008-07-18 2011-05-09 2011-05-09 2015-08-25 391356 ENSG00000184924 OTTHUMG00000151978 uc002rfm.4 NM_001013663 CCDS33156 Q6GMV3 12477932 MGI:1916959 RGD:1561792 PTRHD1 +HGNC:9689 PTS 6-pyruvoyltetrahydropterin synthase protein-coding gene gene with protein product Approved 11q22.3 11q22.3 PTPS 1988-05-11 2015-08-25 5805 ENSG00000150787 OTTHUMG00000167167 uc001pnj.5 U63382 NM_000317 CCDS8359 Q03393 8188266 MGI:1338783 RGD:68367 BIOMDBdb: Database of Mutations Causing BH4 Deficiencies and other PND|http://www.biopku.org/home/biomdb.asp PTS 612719 118157 4.2.3.12 +HGNC:9690 PTTG1 pituitary tumor-transforming 1 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "PTTG|HPTTG|EAP1|securin" "ESP1-associated protein 1|tumor-transforming protein 1" TUTR1 1999-02-23 2016-10-05 9232 ENSG00000164611 OTTHUMG00000130328 uc003lyj.5 AF062649 NM_004219 CCDS4353 O95997 "9811450|9892021" MGI:1353578 RGD:68359 PTTG1 604147 +HGNC:13524 PTTG1IP pituitary tumor-transforming 1 interacting protein protein-coding gene gene with protein product Approved 21q22.3 21q22.3 PBF "C21orf3|C21orf1" 2000-09-20 2014-11-19 754 ENSG00000183255 OTTHUMG00000090254 uc002zgb.3 AF149785 NM_004339 "CCDS13715|CCDS68221" P53801 "9570958|10830953" MGI:2652132 RGD:1305983 PTTG1IP 603784 +HGNC:9691 PTTG2 pituitary tumor-transforming 2 protein-coding gene gene with protein product Approved 4p14 04p14 1999-02-23 2015-09-07 10744 ENSG00000250254 OTTHUMG00000160424 uc011bye.3 AF095288 NM_006607 CCDS54755 Q9NZH5 "10084610|10806349" PTTG2 604231 +HGNC:13422 PTTG3P pituitary tumor-transforming 3, pseudogene pseudogene pseudogene Approved 8q13.1 08q13.1 PTTG3 pituitary tumor-transforming 3 2004-01-22 2009-08-21 2011-04-15 2012-05-23 26255 ENSG00000213005 OTTHUMG00000164788 AF095289 NR_002734 Q9NZH4 10806349 PGOHUM00000257190 +HGNC:20055 PTTG4P pituitary tumor-transforming 4 pseudogene pseudogene pseudogene Approved 14q24.2 14q24.2 2003-01-13 2014-11-19 326315 ENSG00000258571 OTTHUMG00000171288 NG_002565 +HGNC:9692 PTX3 pentraxin 3 protein-coding gene gene with protein product Approved 3q25.32 03q25.32 TSG-14 long pentraxin 3 TNFAIP5 "pentaxin-related gene, rapidly induced by IL-1 beta|tumor necrosis factor, alpha-induced protein 5|pentraxin-related gene, rapidly induced by IL-1 beta|pentraxin 3, long" Long pentraxins 1142 1993-11-08 2015-11-17 2016-10-05 5806 ENSG00000163661 OTTHUMG00000158750 uc003fbl.5 X63613 NM_002852 CCDS3180 P26022 1429570 MGI:104641 RGD:1593476 PTX3 602492 +HGNC:14171 PTX4 pentraxin 4 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 long pentraxin 4 C16orf38 "chromosome 16 open reading frame 38|pentraxin 4, long" Long pentraxins 1142 2000-12-21 2010-03-30 2015-11-17 2015-11-17 390667 ENSG00000251692 OTTHUMG00000044470 uc010uvf.2 NM_001013658 CCDS32362 Q96A99 MGI:1915759 RGD:1311190 PTX4 613442 +HGNC:9693 PUAB1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9694 PUAB2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9695 PUAB3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9696 PUAB4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9697 PUAB5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:16818 PUDP pseudouridine 5'-phosphatase protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 "DXF68S1E|GS1" "FAM16AX|HDHD1A|HDHD1" "family with sequence similarity 16, member A, X-linked|haloacid dehalogenase-like hydrolase domain containing 1A|haloacid dehalogenase-like hydrolase domain containing 1" HAD Asp-based non-protein phosphatases 1045 2003-02-11 2015-08-12 2015-08-12 2016-10-05 8226 ENSG00000130021 OTTHUMG00000021101 M86934 NM_012080 "CCDS48075|CCDS48076|CCDS55366|CCDS55367" Q08623 "1734713|1284467|20722631" MGI:1914615 RGD:1305101 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=HDHD1 306480 3.1.3.96 +HGNC:20200 PUDPP1 pseudouridine 5'-phosphatase pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 "FAM16AY|HDHD1BP|HDHD1P1" "family with sequence similarity 16, member A, Y-linked|HDHD family member 1B, pseudogene|haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 1" 2003-02-13 2015-08-13 2015-08-13 2015-08-13 327658 ENSG00000234620 OTTHUMG00000036408 NG_002612 "1734713|1284467" PGOHUM00000233753 +HGNC:20195 PUDPP2 pseudouridine 5'-phosphatase pseudogene 2 pseudogene pseudogene Approved 1q21.3 01q21.3 "FAM16B|HDHD1CP|HDHD1P2" "family with sequence similarity 16, member B|HDHD family member 1C, pseudogene|haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 2" 2003-02-13 2015-08-13 2015-08-13 2015-08-13 327659 ENSG00000233792 OTTHUMG00000013067 NG_002613 1284467 PGOHUM00000244271 +HGNC:38118 PUDPP3 pseudouridine 5'-phosphatase pseudogene 3 pseudogene pseudogene Approved 20q11.21 20q11.21 "HDHD1DP|HDHD1P3" "HDHD family member 1D, pseudogene|haloacid dehalogenase-like hydrolase domain containing 1 pseudogene 3" 2010-04-20 2015-08-13 2015-08-13 2015-08-13 391242 ENSG00000214245 OTTHUMG00000032236 NG_021980 PGOHUM00000247512 +HGNC:17042 PUF60 poly(U) binding splicing factor 60 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "FIR|SIAHBP1|RoBPI" "siah binding protein 1|FBP interacting repressor|pyrimidine tract binding splicing factor|Ro ribonucleoprotein binding protein 1" poly(U) binding splicing factor 60KDa RNA binding motif containing 725 2007-07-27 2016-06-22 2016-06-22 22827 ENSG00000179950 OTTHUMG00000165155 uc003yzs.5 AF114818 NM_014281 "CCDS47933|CCDS47934|CCDS47935|CCDS59514|CCDS59515|CCDS59516" Q9UHX1 "10668799|10882074|17579712" MGI:1915209 RGD:621674 PUF60 604819 +HGNC:14957 PUM1 pumilio RNA binding family member 1 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "PUMH1|KIAA0099" pumilio homolog 1 (Drosophila) 2001-03-27 2015-11-05 2015-11-05 9698 ENSG00000134644 OTTHUMG00000003795 uc001bsi.2 AF315592 NM_001020658 "CCDS338|CCDS44099" Q14671 MGI:1931749 RGD:1307190 PUM1 607204 +HGNC:14958 PUM2 pumilio RNA binding family member 2 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 "PUMH2|KIAA0235" pumilio homolog 2 (Drosophila) 2001-03-27 2015-11-05 2015-11-05 23369 ENSG00000055917 OTTHUMG00000122098 uc002rdu.3 AF315591 NM_015317 "CCDS1698|CCDS74486|CCDS74487" Q8TB72 "9039502|12459267|12511597" MGI:1931751 RGD:1311024 PUM2 607205 +HGNC:29676 PUM3 pumilio RNA binding family member 3 protein-coding gene gene with protein product Approved 9p24.2 09p24.2 "XTP5|PEN|PUF6|hPUF-A|HA-8" "penguin homolog (Drosophila)|minor histocompatibility antigen HA-8" KIAA0020 KIAA0020 Minor histocompatibility antigens 870 2004-01-06 2015-10-02 2015-11-05 2015-11-05 9933 ENSG00000080608 OTTHUMG00000019450 AL832239 NM_014878 CCDS6448 Q15397 "7584026|7584028|21266351" MGI:106253 RGD:1564753 609960 +HGNC:9701 PURA purine rich element binding protein A protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "PURALPHA|PUR1|PUR-ALPHA" 1993-10-19 2016-06-06 2016-10-05 5813 ENSG00000185129 OTTHUMG00000129242 uc003lfa.4 BC036087 NM_005859 CCDS4220 Q00577 1448097 MGI:103079 RGD:1308543 PURA 600473 418205 +HGNC:9702 PURB purine rich element binding protein B protein-coding gene gene with protein product Approved 7p13 07p13 PURBETA 1993-10-19 2016-06-06 2016-06-06 5814 ENSG00000146676 OTTHUMG00000023578 uc003tme.5 NM_033224 CCDS5499 Q96QR8 1448097 MGI:1338779 RGD:1559465 PURB 608887 +HGNC:17930 PURG purine rich element binding protein G protein-coding gene gene with protein product Approved 8p12 08p12 "PURG-A|PURG-B" 2004-02-09 2016-06-06 2016-10-05 29942 ENSG00000172733 OTTHUMG00000157357 uc003xin.4 AF195513 NM_013357 "CCDS34878|CCDS6081" Q9UJV8 12034829 MGI:1922279 RGD:1305088 PURG +HGNC:15508 PUS1 pseudouridylate synthase 1 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 tRNA pseudouridine(38-40) synthase 2001-04-06 2016-10-05 80324 ENSG00000177192 OTTHUMG00000128507 uc001ujf.4 AF116238 NM_025215 "CCDS9275|CCDS31928" Q9Y606 10094309 MGI:1929237 RGD:1311871 PUS1 608109 118160 +HGNC:25461 PUS3 pseudouridylate synthase 3 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 FKSG32 2004-08-23 2015-07-22 83480 ENSG00000110060 OTTHUMG00000165870 uc001qcy.3 BC004822 NM_031307 "CCDS8466|CCDS73411" Q9BZE2 12477932 MGI:1914299 RGD:1310757 PUS3 616283 +HGNC:26033 PUS7 pseudouridylate synthase 7 (putative) protein-coding gene gene with protein product Approved 7q22.3 07q22.3 FLJ20485 pseudouridylate synthase 7 homolog (S. cerevisiae) 2006-02-07 2014-02-14 2014-11-19 54517 ENSG00000091127 OTTHUMG00000157399 uc003vcy.5 AK128629 NM_019042 CCDS34725 Q96PZ0 11572484 MGI:1925947 RGD:1307054 PUS7 616261 +HGNC:25276 PUS7L pseudouridylate synthase 7 like protein-coding gene gene with protein product Approved 12q12 12q12 DKFZP434G1415 "pseudouridylate synthase 7 homolog (S. cerevisiae)-like|pseudouridylate synthase 7-like" 2006-02-07 2016-03-11 2016-03-11 83448 ENSG00000129317 OTTHUMG00000169423 uc001rns.7 BX647494 NM_031292 "CCDS8743|CCDS61104" Q9H0K6 11230166 MGI:1926145 RGD:1304692 PUS7L +HGNC:49779 PUS7P1 pseudouridylate synthase 7 pseudogene 1 pseudogene pseudogene Approved 9p22.2 09p22.2 2014-02-14 2014-02-14 100421790 NG_023877 PGOHUM00000236397 +HGNC:26505 PUS10 pseudouridylate synthase 10 protein-coding gene gene with protein product Approved 2p16.1-p15 02p16.1-p15 FLJ32312 CCDC139 coiled-coil domain containing 139 2007-07-10 2008-01-09 2008-01-09 2016-10-11 150962 ENSG00000162927 OTTHUMG00000129423 uc002sao.4 AK056874 NM_144709 CCDS1865 Q3MIT2 17900615 MGI:1921717 RGD:1306402 PUS10 612787 +HGNC:26914 PUSL1 pseudouridylate synthase-like 1 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ90811 2004-08-23 2015-08-25 126789 ENSG00000169972 OTTHUMG00000003361 uc001aed.4 AK027721 NM_153339 CCDS20 Q8N0Z8 12477932 MGI:3047787 RGD:1559560 PUSL1 +HGNC:9703 PUT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9704 PVALB parvalbumin protein-coding gene gene with protein product Approved 22q12.3 22q12.3 D22S749 EF-hand domain containing 863 1986-01-01 2016-10-05 5816 ENSG00000100362 OTTHUMG00000150547 uc003apx.4 NM_002854 CCDS13933 P20472 "1559707|10591208" MGI:97821 RGD:3457 PVALB 168890 +HGNC:9705 PVR poliovirus receptor protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "CD155|HVED|Necl-5|NECL5|Tage4" nectin-like 5 PVS "CD molecules|V-set domain containing|C2-set domain containing|Immunoglobulin like domain containing" "471|590|592|594" 2001-06-22 2016-10-05 5817 ENSG00000073008 OTTHUMG00000151527 uc032hzv.2 BC015542 NM_006505 "CCDS12640|CCDS46105|CCDS46106|CCDS46107" P15151 2170108 RGD:3813 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ PVR 173850 CD155 +HGNC:32190 PVRIG poliovirus receptor related immunoglobulin domain containing protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "MGC2463|C7orf15" 2006-09-20 2015-09-07 79037 ENSG00000213413 OTTHUMG00000156798 uc003uuf.2 BC001129 NM_024070 CCDS5690 Q6DKI7 16926269 MGI:5596028 RGD:1585866 PVRIG 617012 +HGNC:48897 PVRIG2P poliovirus receptor related immunoglobulin domain containing 2, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 2013-06-26 2013-07-26 101752334 ENSG00000235333 OTTHUMG00000156886 NR_103728 +HGNC:40813 PVRL3-AS1 PVRL3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.13 03q13.13 PVRL3 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100506555 ENSG00000242242 OTTHUMG00000159244 uc062mid.1 NR_045114 +HGNC:9709 PVT1 Pvt1 oncogene (non-protein coding) non-coding RNA RNA, long non-coding Approved 8q24.21 08q24.21 "NCRNA00079|LINC00079|onco-lncRNA-100" "non-protein coding RNA 79|long intergenic non-protein coding RNA 79" "pvt-1 (murine) oncogene homolog, MYC activator|Pvt1 oncogene homolog (mouse)" Long non-coding RNAs 788 2001-06-22 2008-09-02 2016-10-05 5820 ENSG00000249859 OTTHUMG00000164871 uc003ysl.4 M31519 NR_003367 "17503467|23801869" MGI:97824 RGD:6496716 165140 +HGNC:30089 PWAR1 Prader Willi/Angelman region RNA 1 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 "PAR1|PAR-1" Prader Willi/Angelman region 1 Long non-coding RNAs 788 2013-06-14 2014-07-18 145624 ENSG00000279050 OTTHUMG00000176879 NR_022009 "7987392|9477342" 600161 +HGNC:29998 PWAR4 Prader Willi/Angelman region RNA 4 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 "PAR4|PAR-4" 2013-06-14 2014-03-28 347745 NR_022010 "11106375|7987392" +HGNC:30090 PWAR5 Prader Willi/Angelman region RNA 5 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 "PAR5|PAR-5" Prader Willi/Angelman syndrome 5 Long non-coding RNAs 788 2013-06-14 2014-07-18 8123 ENSG00000279192 OTTHUMG00000184194 NR_022008 "7987392|9477342|23726844" 600162 +HGNC:49129 PWAR6 Prader Willi/Angelman region RNA 6 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 "HBT8|PAR-6" 2013-09-11 2013-09-11 2014-03-28 100506965 ENSG00000257151 OTTHUMG00000170276 "BC043194|AK096584" +HGNC:30001 PWARSN Prader Willi/Angelman region RNA, SNRPN neighbor non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 "PAR-SN|PARSN" paternally expressed transcript adjacent to snRPN Long non-coding RNAs 788 2013-06-14 2013-06-14 2015-05-27 347746 NR_022011 "12210318|8858349" +HGNC:17015 PWP1 PWP1 homolog, endonuclein protein-coding gene gene with protein product Approved 12q23.3 12q23.3 IEF-SSP-9502 endonuclein PWP1 homolog (S. cerevisiae) WD repeat domain containing 362 2005-05-13 2015-07-09 2015-07-22 11137 ENSG00000136045 OTTHUMG00000169913 uc001tmo.2 BC000067 NM_007062 "CCDS9114|CCDS81735" Q13610 "7828893|11850830" MGI:1914735 RGD:1310705 PWP1 +HGNC:9711 PWP2 PWP2 periodic tryptophan protein homolog (yeast) protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "EHOC-17|UTP1" PWP2H PWP2 (periodic tryptophan protein, yeast) homolog "WD repeat domain containing|UTPB complex" "362|1225" 1996-04-17 2006-11-24 2001-11-28 2014-11-19 5822 ENSG00000241945 OTTHUMG00000086893 uc002zeb.4 NM_005049 CCDS33579 Q15269 8893822 MGI:1341200 RGD:1582817 PWP2 601475 +HGNC:33235 PWRN1 Prader-Willi region non-protein coding RNA 1 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 NCRNA00198 non-protein coding RNA 198 Long non-coding RNAs 788 2007-01-04 2008-08-13 2015-05-22 791114 ENSG00000259905 OTTHUMG00000173077 uc059gtr.1 "AC139362|AC139147|AC100720" NR_026646 17337158 611215 +HGNC:33236 PWRN2 Prader-Willi region non-protein coding RNA 2 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 NCRNA00199 non-protein coding RNA 199 Long non-coding RNAs 788 2007-01-04 2008-08-13 2014-07-18 791115 ENSG00000260551 OTTHUMG00000173073 uc001ywl.3 AC087474 NR_026647 17337158 611217 +HGNC:49131 PWRN3 Prader-Willi region non-protein coding RNA 3 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 2013-09-11 2013-09-11 101928840 ENSG00000260760 OTTHUMG00000176387 "AA412395|DB060889" NR_130780 +HGNC:49130 PWRN4 Prader-Willi region non-protein coding RNA 4 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 LINC01084 long intergenic non-protein coding RNA 1084 2013-09-11 2013-09-11 2014-02-12 104355151 ENSG00000260232 OTTHUMG00000172887 "CK820921|BI712798" NR_126392 +HGNC:29406 PWWP2A PWWP domain containing 2A protein-coding gene gene with protein product Approved 5q33.3 05q33.3 KIAA1935 PWWP domain containing 1147 2007-10-22 2011-03-23 114825 ENSG00000170234 OTTHUMG00000163546 uc011ded.3 XM_011534424 "CCDS47331|CCDS47332|CCDS58990" Q96N64 MGI:1918052 RGD:1305891 PWWP2A +HGNC:39709 PWWP2AP1 PWWP domain containing 2A pseudogene 1 pseudogene pseudogene Approved 13q31.1 13q31.1 2011-03-23 2011-03-23 100129459 ENSG00000226683 OTTHUMG00000017142 NG_011459 PGOHUM00000248646 +HGNC:25150 PWWP2B PWWP domain containing 2B protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "bA432J24.1|FLJ46823" PWWP2 PWWP domain containing 2 PWWP domain containing 1147 2004-03-16 2007-10-22 2007-10-22 2014-11-19 170394 ENSG00000171813 OTTHUMG00000019286 uc001lll.5 AK128663 NM_138499 "CCDS7667|CCDS44497" Q6NUJ5 MGI:2142008 RGD:1307108 PWWP2B +HGNC:21361 PXDC1 PX domain containing 1 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 C6orf145 chromosome 6 open reading frame 145 2003-06-10 2011-11-25 2011-11-25 2016-10-05 221749 ENSG00000168994 OTTHUMG00000014146 uc003mvt.3 AJ420534 NM_183373 CCDS4486 Q5TGL8 MGI:1914145 RGD:1311307 PXDC1 +HGNC:14966 PXDN peroxidasin protein-coding gene gene with protein product Approved 2p25.3 02p25.3 "KIAA0230|PRG2|MG50|D2S448|D2S448E|PXN" peroxidasin homolog (Drosophila) I-set domain containing 593 2005-07-19 2014-12-17 2014-12-17 7837 ENSG00000130508 OTTHUMG00000059697 uc002qxa.4 AF200348 NM_012293 CCDS46221 Q92626 "10441517|9039502|22842973" MGI:1916925 RGD:1560694 PXDN 605158 285089 +HGNC:26359 PXDNL peroxidasin like protein-coding gene gene with protein product Approved 8q11.22-q11.23 08q11.22-q11.23 "FLJ25471|PMR1" polysomal ribonuclease 1 homolog (Xenopus) "peroxidasin homolog-like (Drosophila)|peroxidasin homolog (Drosophila)-like" I-set domain containing 593 2005-07-19 2015-11-09 2016-10-11 137902 ENSG00000147485 OTTHUMG00000164244 uc003xqu.5 NM_144651 CCDS47855 A1KZ92 "22543864|24924147" PXDNL 615904 +HGNC:23326 PXK PX domain containing serine/threonine kinase like protein-coding gene gene with protein product Approved 3p14.3 03p14.3 FLJ20335 PX domain containing serine/threonine kinase 2003-11-07 2016-01-27 2016-10-05 54899 ENSG00000168297 OTTHUMG00000159149 uc003djz.3 AY274811 NM_017771 "CCDS2889|CCDS74952|CCDS74954|CCDS74955" Q7Z7A4 20086096 MGI:1289230 RGD:727819 PXK 611450 364829 objectId:2183 +HGNC:9716 PXMP2 peroxisomal membrane protein 2 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 PMP22 "peroxisomal membrane protein 2 (22kD)|peroxisomal membrane protein 2, 22kDa" 1992-03-03 2015-11-09 2016-10-05 5827 ENSG00000176894 OTTHUMG00000168019 uc001ukt.3 NM_018663 CCDS9279 Q9NR77 11590176 MGI:107487 RGD:61812 PXMP2 +HGNC:15920 PXMP4 peroxisomal membrane protein 4 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 PMP24 24 kDa peroxisomal intrinsic membrane protein "peroxisomal membrane protein 4 (24kD)|peroxisomal membrane protein 4, 24kDa" 2001-06-21 2015-11-09 2015-11-09 11264 ENSG00000101417 OTTHUMG00000032273 uc002wzv.4 AF072864 NM_007238 "CCDS13225|CCDS13226" Q9Y6I8 10366717 MGI:1891701 RGD:628782 PXMP4 616397 +HGNC:9718 PXN paxillin protein-coding gene gene with protein product Approved 12q24.23 12q24.23 LIM domain containing 1218 1998-04-29 2016-10-05 5829 ENSG00000089159 OTTHUMG00000169169 uc001txv.3 U14588 NM_002859 "CCDS44996|CCDS44997|CCDS44998|CCDS58281" P49023 7534286 MGI:108295 RGD:1305759 PXN 602505 +HGNC:44123 PXN-AS1 PXN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q24.23 12q24.23 EyeLinc4 PXN antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2013-05-08 100506649 ENSG00000255857 OTTHUMG00000169166 uc058uai.1 NR_038924 +HGNC:18312 PXT1 peroxisomal, testis specific 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 STEPP 2004-04-30 2004-04-30 222659 ENSG00000179165 OTTHUMG00000159815 uc003omd.3 AF486827 NM_152990 CCDS4820 Q8NFP0 MGI:1916557 RGD:2321717 PXT1 +HGNC:26303 PXYLP1 2-phosphoxylose phosphatase 1 protein-coding gene gene with protein product Approved 3q23 03q23 FLJ23751 ACPL2 acid phosphatase-like 2 Acid phosphatases 1071 2004-09-16 2014-03-17 2014-03-17 2014-03-17 92370 ENSG00000155893 OTTHUMG00000160171 NM_152282 "CCDS3116|CCDS63797" Q8TE99 24425863 MGI:2442444 RGD:1359617 +HGNC:16608 PYCARD PYD and CARD domain containing protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "TMS-1|CARD5|ASC" "Caspase recruitment domain containing|Pyrin domain containing" "959|994" 2004-06-25 2014-11-19 29108 ENSG00000103490 OTTHUMG00000176753 uc010cak.4 AB023416 NM_013258 "CCDS10708|CCDS10709" Q9ULZ3 MGI:1931465 RGD:628637 PYCARD 606838 +HGNC:45036 PYCARD-AS1 PYCARD antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p11.2 16p11.2 "C16orf98|PYCARDOS" "chromosome 16 open reading frame 98|PYCARD opposite strand" 2013-01-22 2014-10-03 2014-10-03 2014-10-03 100652740 ENSG00000261359 OTTHUMG00000132405 NR_102400 I3L0S3 +HGNC:9721 PYCR1 pyrroline-5-carboxylate reductase 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 P5C 1992-11-24 2015-09-07 5831 ENSG00000183010 OTTHUMG00000178436 uc002kct.3 XM_005256381 "CCDS11794|CCDS11795|CCDS62365|CCDS62366|CCDS82221" P32322 1730675 MGI:2384795 RGD:1307863 PYCR1 179035 201595 1.5.1.2 +HGNC:30262 PYCR2 pyrroline-5-carboxylate reductase family member 2 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 P5CR2 pyrroline-5-carboxylate reductase family, member 2 2004-03-11 2015-11-18 2016-10-05 29920 ENSG00000143811 OTTHUMG00000037506 uc001hpq.5 AF151351 NM_013328 "CCDS31043|CCDS73039" Q96C36 12477932 MGI:1277956 RGD:1310074 PYCR2 616406 +HGNC:25846 PYCRL pyrroline-5-carboxylate reductase-like protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FLJ13852 2004-03-19 2011-09-30 2011-09-30 2015-08-25 65263 ENSG00000104524 OTTHUMG00000157010 uc003yyy.3 AF086378 NM_023078 CCDS6407 Q53H96 MGI:1913444 RGD:1309115 PYCRL 616408 +HGNC:30261 PYDC1 pyrin domain containing 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "ASC2|POP1" "pyrin domain containing 1|PYD (pyrin domain) containing 1" Pyrin domain containing 994 2005-04-14 2016-03-22 2016-03-22 260434 ENSG00000169900 OTTHUMG00000132407 uc002ebo.4 NM_152901 CCDS10710 Q8WXC3 "11786556|16905547" PYDC1 615700 +HGNC:33512 PYDC2 pyrin domain containing 2 protein-coding gene gene with protein product Approved 3q28 03q28 POP2 Pyrin domain containing 994 2008-07-29 2015-07-22 152138 ENSG00000253548 OTTHUMG00000156167 uc011bso.2 NM_001083308 Q56P42 17178784 PYDC2 615701 +HGNC:9723 PYGB phosphorylase, glycogen; brain protein-coding gene gene with protein product Approved 20p11.21 20p11.21 glycogen phosphorylase, brain form Phosphorylases, glycogen 437 1988-06-27 2014-11-18 5834 ENSG00000100994 OTTHUMG00000032117 uc002wup.4 NM_002862 CCDS13171 P11216 MGI:97828 RGD:3460 PYGB 138550 2.4.1.1 +HGNC:9724 PYGBL entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-08-27 +HGNC:9725 PYGL phosphorylase, glycogen, liver protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "Hers disease|glycogen storage disease type VI|glycogen phosphorylase, liver form" phosphorylase, glycogen; liver Phosphorylases, glycogen 437 2001-06-22 2008-07-31 2016-10-05 5836 ENSG00000100504 OTTHUMG00000166596 uc001wyu.4 NM_002863 "CCDS32080|CCDS53894" P06737 2877458 MGI:97829 RGD:620687 PYGL 613741 118180 2.4.1.1 +HGNC:9726 PYGM phosphorylase, glycogen, muscle protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "McArdle syndrome|glycogen storage disease type V|glycogen phosphorylase, muscle form" phosphorylase, glycogen; muscle Phosphorylases, glycogen 437 2001-06-22 2008-07-31 2016-05-10 5837 ENSG00000068976 OTTHUMG00000066835 uc001oax.5 NM_005609 "CCDS8079|CCDS53659" P11217 MGI:97830 RGD:3461 PYGM 608455 118182 2.4.1.1 +HGNC:30256 PYGO1 pygopus family PHD finger 1 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 pygopus homolog 1 (Drosophila) PHD finger proteins 88 2004-11-10 2013-10-09 2016-10-05 26108 ENSG00000171016 OTTHUMG00000132009 uc031qsf.3 AF457207 NM_015617 "CCDS10155|CCDS81885" Q9Y3Y4 11988739 MGI:1919385 RGD:1594620 PYGO1 606902 +HGNC:30257 PYGO2 pygopus family PHD finger 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 pygopus homolog 2 (Drosophila) PHD finger proteins 88 2004-11-10 2013-10-09 2016-10-05 90780 ENSG00000163348 OTTHUMG00000037370 uc001fft.4 BC006132 NM_138300 CCDS1075 Q9BRQ0 11988739 MGI:1916161 RGD:1308535 PYGO2 606903 +HGNC:9727 PYHG1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9737 PYHG2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9741 PYHG3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9742 PYHG4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9743 PYHG6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9744 PYHG7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9745 PYHG8 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9746 PYHG9 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9728 PYHG10 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9729 PYHG11 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9730 PYHG12 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9731 PYHG14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9732 PYHG15 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9733 PYHG16 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9734 PYHG17 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9735 PYHG18 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9736 PYHG19 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9738 PYHG20 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9739 PYHG21 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:9740 PYHG22 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:28894 PYHIN1 pyrin and HIN domain family member 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "IFIX|MGC23885" pyrin and HIN domain family, member 1 "Pyrin domain containing|Pyrin and HIN domain family" "994|995" 2005-01-24 2015-11-18 2015-11-18 149628 ENSG00000163564 OTTHUMG00000037109 uc001ftb.4 AY185344 NM_152501 "CCDS1178|CCDS1179|CCDS30907|CCDS30908" Q6K0P9 15122330 PYHIN1 612677 +HGNC:51820 PYHIN5P pyrin and HIN domain family member 5, pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 pyrin and HIN domain family, member 5, pseudogene "Pyrin domain containing|Pyrin and HIN domain family" "994|995" 2015-06-16 2015-11-18 2015-11-18 646377 ENSG00000229849 OTTHUMG00000022771 NG_029130 +HGNC:30258 PYM1 PYM homolog 1, exon junction complex associated factor protein-coding gene gene with protein product Approved 12q13.2 12q13.2 PYM partner of Y14 and Mago WIBG within bgcn homolog (Drosophila) 2005-03-17 2015-09-28 2015-09-28 2015-09-28 84305 ENSG00000170473 OTTHUMG00000170220 BC014976 NM_032345 "CCDS41795|CCDS44916" Q9BRP8 "12438415|12483225" MGI:1925678 RGD:1306096 +HGNC:26162 PYROXD1 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "DKFZp762G094|FLJ22028" 2007-08-02 2014-11-19 79912 ENSG00000121350 OTTHUMG00000169129 uc001rew.4 AL832441 NM_024854 CCDS31755 Q8WU10 12477932 MGI:2676395 RGD:1303253 PYROXD1 +HGNC:23517 PYROXD2 pyridine nucleotide-disulphide oxidoreductase domain 2 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 FLJ23849 C10orf33 chromosome 10 open reading frame 33 2003-11-21 2009-04-22 2009-04-22 2015-07-16 84795 ENSG00000119943 OTTHUMG00000018877 uc001kpc.4 AK074429 NM_032709 CCDS7474 Q8N2H3 MGI:1921830 RGD:1303232 PYROXD2 +HGNC:44317 PYURF PIGY upstream reading frame protein-coding gene gene with protein product Approved 4q22.1 04q22.1 PreY 2012-08-14 2012-08-14 100996939 ENSG00000145337 OTTHUMG00000130949 uc003hru.3 NM_032906.4 Q96I23 16162815 MGI:1913709 RGD:1565524 +HGNC:9748 PYY peptide YY protein-coding gene gene with protein product Approved 17q21.31 17q21.31 PYY1 prepro-PYY Endogenous ligands 542 1994-09-14 2016-10-05 5697 ENSG00000131096 OTTHUMG00000181801 uc002ieq.4 NM_004160 CCDS32662 P10082 7782089 MGI:99924 RGD:1593289 PYY 600781 +HGNC:9749 PYY2 peptide YY 2 (pseudogene) pseudogene pseudogene Approved 17q11.2 17q11.2 seminalplasmin peptide YY, 2 (seminalplasmin) 1999-10-19 2016-08-08 2016-10-05 23615 ENSG00000237575 OTTHUMG00000132450 AF222904 NR_003064 Q9NRI6 7831336 606637 +HGNC:31855 PYY3 peptide YY 3 (pseudogene) pseudogene pseudogene Approved Xp11.22 Xp11.22 OTTHUMG00000021515 peptide YY, 3 2006-07-04 2016-08-08 2016-08-08 644059 ENSG00000181977 OTTHUMG00000021515 NG_007615 Q5JQD4 PYY3 PGOHUM00000260961 +HGNC:9750 PZP PZP, alpha-2-macroglobulin like protein-coding gene gene with protein product Approved 12p13.31 12p13.31 CPAMD6 pregnancy-zone protein C3 and PZP like, alpha-2-macroglobulin domain containing 1234 1989-06-30 2016-05-16 2016-10-05 5858 ENSG00000126838 OTTHUMG00000154915 uc001qvl.3 "X54380|M24416|X51541" NM_002864 CCDS8600 P20742 RGD:621366 PZP 176420 I39.003 +HGNC:9751 QARS glutaminyl-tRNA synthetase protein-coding gene gene with protein product Approved 3p21.31 03p21.31 glutamine tRNA ligase Aminoacyl tRNA synthetases, Class I 131 1994-12-13 2014-11-19 5859 ENSG00000172053 OTTHUMG00000156774 uc003cvx.6 X76013 NM_005051 "CCDS2788|CCDS63633" P47897 "8078941|10393422" MGI:1915851 RGD:1359448 QARS 603727 406879 6.1.1.18 +HGNC:9752 QDPR quinoid dihydropteridine reductase protein-coding gene gene with protein product Approved 4p15.32 04p15.32 "DHPR|PKU2|SDR33C1" "6,7-dihydropteridine reductase|short chain dehydrogenase/reductase family 33C, member 1" Short chain dehydrogenase/reductase superfamily 743 2001-06-22 2016-10-05 5860 ENSG00000151552 OTTHUMG00000128537 uc003gpd.4 AB053170 NM_000320 "CCDS3421|CCDS77904" P09417 19027726 MGI:97836 RGD:619915 BIOMDBdb: Database of Mutations Causing BH4 Deficiencies and other PND|http://www.biopku.org/home/biomdb.asp QDPR 612676 118184 1.5.1.34 +HGNC:21100 QKI QKI, KH domain containing RNA binding protein-coding gene gene with protein product Approved 6q26 06q26 QK3 quaking homolog, KH domain RNA binding (mouse) 2003-05-19 2016-07-01 2016-07-01 9444 ENSG00000112531 OTTHUMG00000015977 uc003qui.3 AB067798 NM_006775 "CCDS5285|CCDS5286|CCDS5287|CCDS43525|CCDS75546" Q96PU8 10535969 MGI:97837 RGD:1584886 QKI 609590 460502 +HGNC:9753 QPCT glutaminyl-peptide cyclotransferase protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "QC|GCT" glutaminyl cyclase 1999-11-16 2008-07-31 2016-10-05 25797 ENSG00000115828 OTTHUMG00000100963 uc002rqg.4 X71125 NM_012413 CCDS1790 Q16769 7999256 MGI:1917786 RGD:1562284 QPCT 607065 M28.974 objectId:2411 2.3.2.5 +HGNC:25952 QPCTL glutaminyl-peptide cyclotransferase like protein-coding gene gene with protein product Approved 19q13.32 19q13.32 FLJ20084 glutaminyl cyclase-like 2004-10-01 2016-06-22 2016-06-22 54814 ENSG00000011478 OTTHUMG00000182131 uc010xxr.3 AK000091 NM_017659 "CCDS12672|CCDS54282" Q9NXS2 MGI:1914619 RGD:1308128 QPCTL M28.016 +HGNC:9755 QPRT quinolinate phosphoribosyltransferase protein-coding gene gene with protein product Approved 16p11.2 16p11.2 QPRTase nicotinate-nucleotide pyrophosphorylase (carboxylating) 1999-11-16 2008-07-31 2014-11-19 23475 ENSG00000103485 OTTHUMG00000097770 uc002dto.4 D78177 NM_014298 "CCDS10651|CCDS81965" Q15274 9473669 MGI:1914625 RGD:1310309 QPRT 606248 2.4.2.19 +HGNC:29982 QRFP pyroglutamylated RFamide peptide protein-coding gene gene with protein product Approved 9q34.12 09q34.12 "26RFa|P518" prepro-QRFP Endogenous ligands 542 2007-06-14 2014-11-19 347148 ENSG00000188710 OTTHUMG00000131663 uc064woc.1 AB109625 NM_198180 CCDS6936 P83859 "12714592|15808908" MGI:3630329 RGD:735020 QRFP 609795 +HGNC:15565 QRFPR pyroglutamylated RFamide peptide receptor protein-coding gene gene with protein product Approved 4q27 04q27 peptide P518 receptor GPR103 G protein-coupled receptor 103 Peptide receptors 220 2001-06-25 2008-12-18 2008-12-18 2015-09-01 84109 ENSG00000186867 OTTHUMG00000133036 uc010inj.2 AF411117 NM_198179 CCDS3719 Q96P65 11574155 MGI:2677633 RGD:728380 QRFPR 606925 objectId:333 +HGNC:24713 QRICH1 glutamine rich 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ20259 glutamine-rich 1 2005-12-19 2016-01-27 2016-01-27 54870 ENSG00000198218 OTTHUMG00000156772 uc003cvv.4 NM_017730 CCDS2787 Q2TAL8 12477932 MGI:1916482 RGD:1311095 QRICH1 +HGNC:25326 QRICH2 glutamine rich 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 DKFZP434P0316 2005-12-21 2014-11-19 84074 ENSG00000129646 OTTHUMG00000167578 uc002jrd.1 AK058102 NM_032134 CCDS32741 Q9H0J4 MGI:2684912 RGD:1562974 QRICH2 +HGNC:21020 QRSL1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 protein-coding gene gene with protein product Approved 6q21 06q21 "GatA|FLJ10989|FLJ12189|DKFZP564C1278|FLJ13447" glutamyl-tRNA(Gln) amidotransferase, subunit A 2003-05-06 2015-08-25 55278 ENSG00000130348 OTTHUMG00000015301 uc003prm.4 AK001851 NM_018292 CCDS5057 Q9H0R6 "11230166|19805282" MGI:1923813 RGD:1359490 QRSL1 +HGNC:43667 QRSL1P1 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 1 pseudogene pseudogene Approved 1q24.2 01q24.2 2012-01-26 2012-01-26 730016 ENSG00000215833 OTTHUMG00000034645 NG_009546 PGOHUM00000244326 +HGNC:43668 QRSL1P2 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 2 pseudogene pseudogene Approved 1q41 01q41 2012-01-26 2012-01-26 100422330 ENSG00000227613 OTTHUMG00000037422 NG_027044 PGOHUM00000244436 +HGNC:43669 QRSL1P3 glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1 pseudogene 3 pseudogene pseudogene Approved 14q13.2 14q13.2 2012-01-26 2012-01-26 100422374 ENSG00000257957 OTTHUMG00000170562 NG_027348 PGOHUM00000248135 +HGNC:26154 QSER1 glutamine and serine rich 1 protein-coding gene gene with protein product Approved 11p13 11p13 FLJ21924 2006-02-06 2014-11-19 79832 ENSG00000060749 OTTHUMG00000166220 uc001mty.4 AL834141 NM_024774 CCDS41631 Q2KHR3 MGI:2138986 RGD:1311804 QSER1 +HGNC:9756 QSOX1 quiescin sulfhydryl oxidase 1 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 thiol oxidase 1 QSCN6 "quiescin Q6|quiescin Q6 sulfhydryl oxidase 1" 1998-05-15 2007-04-23 2015-11-27 2016-10-05 5768 ENSG00000116260 OTTHUMG00000035256 uc001gnz.4 U97276 NM_002826 "CCDS1337|CCDS30950" O00391 "9878249|8396966|12176051" MGI:1330818 RGD:68957 QSOX1 603120 1.8.3.2 +HGNC:30249 QSOX2 quiescin sulfhydryl oxidase 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "SOXN|DKFZp762A2013" thiol oxidase 2 QSCN6L1 "quiescin Q6-like 1|quiescin Q6 sulfhydryl oxidase 2" 2004-01-06 2007-04-23 2015-11-27 2015-11-27 169714 ENSG00000165661 OTTHUMG00000020923 uc010nbi.4 AJ318051 NM_181701 CCDS35178 Q6ZRP7 12176051 MGI:2387194 RGD:1584720 QSOX2 612860 1.8.3.2 +HGNC:23797 QTRT1 queuine tRNA-ribosyltransferase catalytic subunit 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 TGT tRNA-guanine transglycosylase queuine tRNA-ribosyltransferase 1 2003-12-10 2016-02-23 2016-02-23 81890 ENSG00000213339 OTTHUMG00000180588 uc002mpr.4 AF302783 NM_031209 CCDS12248 Q9BXR0 20354154 MGI:1931441 RGD:620996 QTRT1 609615 2.4.2.29 +HGNC:39179 QTRT1P1 queuine tRNA-ribosyltransferase catalytic subunit 1 pseudogene 1 pseudogene pseudogene Approved Xq23 Xq23 queuine tRNA-ribosyltransferase 1 pseudogene 1 2010-11-16 2016-02-23 2016-02-23 100420656 ENSG00000270524 OTTHUMG00000184984 NG_026873 PGOHUM00000241955 +HGNC:25771 QTRT2 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding gene gene with protein product Approved 3q13.31 03q13.31 FLJ12960 QTRTD1 queuine tRNA-ribosyltransferase domain containing 1 2003-12-18 2016-02-23 2016-02-23 2016-02-23 79691 ENSG00000151576 OTTHUMG00000159336 uc003eay.5 AK023022 NM_024638 "CCDS33828|CCDS58846|CCDS58845|CCDS58844" Q9H974 "19414587|20354154" MGI:1922194 RGD:1310054 +HGNC:27329 R3HCC1 R3H domain and coiled-coil containing 1 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 DKFZp564N123 2005-09-02 2005-11-20 2016-04-25 203069 ENSG00000104679 OTTHUMG00000163786 uc003xdf.4 NM_001136108 "CCDS47826|CCDS78317" Q9Y3T6 12477932 MGI:1919093 RGD:1311790 R3HCC1 +HGNC:23512 R3HCC1L R3H domain and coiled-coil containing 1 like protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "GIDRP86|PSORT" C10orf28 "chromosome 10 open reading frame 28|R3H domain and coiled-coil containing 1-like" 2003-11-21 2012-05-23 2015-12-04 2015-12-04 27291 ENSG00000166024 OTTHUMG00000018873 uc009xvx.4 AF525304 NM_014472 "CCDS31267|CCDS58093|CCDS73178" Q7Z5L2 MGI:1196316 RGD:1307934 R3HCC1L +HGNC:9757 R3HDM1 R3H domain containing 1 protein-coding gene gene with protein product Approved 2q21.3 02q21.3 KIAA0029 R3HDM R3H domain (binds single-stranded nucleic acids) containing 2000-08-11 2005-09-02 2005-09-02 2014-11-19 23518 ENSG00000048991 OTTHUMG00000131740 uc002tuo.5 D21852 NM_015361 "CCDS2177|CCDS63024|CCDS63025|CCDS63026" Q15032 7584026 MGI:2448514 RGD:1307497 R3HDM1 +HGNC:29167 R3HDM2 R3H domain containing 2 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 KIAA1002 2006-02-01 2014-11-19 22864 ENSG00000179912 OTTHUMG00000171568 uc001sns.3 AB023219 NM_014925 "CCDS8937|CCDS81703|CCDS81704" Q9Y2K5 MGI:1919000 RGD:1310066 R3HDM2 +HGNC:44056 R3HDM2P1 R3H domain containing 2 pseudogene 1 pseudogene pseudogene Approved 4q28.3 04q28.3 2012-05-30 2014-11-19 100419742 ENSG00000248735 OTTHUMG00000161300 NG_025254 PGOHUM00000246082 +HGNC:44057 R3HDM2P2 R3H domain containing 2 pseudogene 2 pseudogene pseudogene Approved 6q16.3 06q16.3 2012-05-30 2014-11-19 100129694 ENSG00000216817 OTTHUMG00000015285 NG_022319 PGOHUM00000243310 +HGNC:28270 R3HDM4 R3H domain containing 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC16353 C19orf22 chromosome 19 open reading frame 22 2004-03-16 2011-11-23 2011-11-23 2014-11-19 91300 ENSG00000198858 OTTHUMG00000181899 uc002lqg.3 BC012775 NM_138774 CCDS12048 Q96D70 12477932 MGI:1924814 RGD:1307067 +HGNC:16249 R3HDML R3H domain containing like protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ881L22.3 "R3H domain (binds single-stranded nucleic acids) containing-like|R3H domain containing-like" 2005-02-14 2016-04-12 2016-04-12 140902 ENSG00000101074 OTTHUMG00000032524 uc002xls.3 BC107048 NM_178491 CCDS13329 Q9H3Y0 MGI:3650937 RGD:1305296 R3HDML +HGNC:9758 RAB1A RAB1A, member RAS oncogene family protein-coding gene gene with protein product Approved 2p14 02p14 YPT1 Rab GTPase YPT1 homolog (yeast) RAB1 RAB, member RAS oncogene GTPases 388 1990-01-22 2002-03-17 2014-11-18 5861 ENSG00000138069 OTTHUMG00000152725 uc002sdm.4 M28209 NM_004161 "CCDS46305|CCDS46306" P62820 2501306 MGI:97842 RGD:619736 RAB1A 179508 +HGNC:18370 RAB1B RAB1B, member RAS oncogene family protein-coding gene gene with protein product Approved 11q13.2 11q13.2 RAB, member RAS oncogene GTPases 388 2002-03-14 2016-10-05 81876 ENSG00000174903 OTTHUMG00000166916 uc001ohf.4 AJ245875 NM_030981 CCDS31613 Q9H0U4 9030196 MGI:1923558 RGD:1642882 RAB1B 612565 +HGNC:23683 RAB1C RAB1C, member RAS oncogene family pseudogene pseudogene pseudogene Approved 9p13.2 09p13.2 RAB1C, member RAS oncogene family RAB, member RAS oncogene GTPases 388 2005-12-22 2007-08-10 2016-10-05 441400 ENSG00000233111 OTTHUMG00000019925 NG_005395 Q92928 RGD:2322370 +HGNC:9763 RAB2A RAB2A, member RAS oncogene family protein-coding gene gene with protein product Approved 8q12.1-q12.2 08q12.1-q12.2 RAB2 RAB2, member RAS oncogene family RAB, member RAS oncogene GTPases 388 1990-01-22 2007-01-15 2007-01-15 2016-10-11 5862 ENSG00000104388 OTTHUMG00000134298 uc003xud.3 NM_002865 "CCDS6175|CCDS56537" P61019 MGI:1928750 RGD:68323 RAB2A 179509 +HGNC:20246 RAB2B RAB2B, member RAS oncogene family protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ14824 RAB, member RAS oncogene GTPases 388 2003-01-14 2016-10-05 84932 ENSG00000129472 OTTHUMG00000029693 uc010tlt.2 AK027730 XM_017021710 CCDS9570 Q8WUD1 12376746 MGI:1923588 RGD:1309117 RAB2B 607466 +HGNC:9777 RAB3A RAB3A, member RAS oncogene family protein-coding gene gene with protein product Approved 19p13.11 19p13.11 RAS-associated protein RAB3A RAB, member RAS oncogene GTPases 388 1989-06-30 2016-10-05 5864 ENSG00000105649 OTTHUMG00000137378 uc002nie.3 NM_002866 CCDS12372 P20336 "2687157|7532276" MGI:97843 RGD:3528 RAB3A 179490 +HGNC:9778 RAB3B RAB3B, member RAS oncogene family protein-coding gene gene with protein product Approved 1p32.3 01p32.3 RAB, member RAS oncogene GTPases 388 1989-06-30 2016-10-05 5865 ENSG00000169213 OTTHUMG00000008627 uc001cth.3 BC005035 NM_002867 CCDS560 P20337 MGI:1917158 RGD:620922 RAB3B 179510 +HGNC:30269 RAB3C RAB3C, member RAS oncogene family protein-coding gene gene with protein product Approved 5q11.2 05q11.2 RAB, member RAS oncogene GTPases 388 2004-01-29 2016-10-05 115827 ENSG00000152932 OTTHUMG00000097053 uc003jrp.4 AY026936 NM_138453 CCDS3976 Q96E17 12296628 MGI:1914545 RGD:620923 RAB3C 612829 +HGNC:9779 RAB3D RAB3D, member RAS oncogene family protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "RAB16|D2-2|RAD3D" "Rab3D upregulated with myeloid differentiation|glioblastoma overexpressed" GOV RAB, member RAS oncogene GTPases 388 1999-06-02 2014-11-19 9545 ENSG00000105514 OTTHUMG00000180835 uc060tqf.1 AF081353 NM_004283 CCDS12257 O95716 "10023084|10072586" MGI:97844 RGD:620924 RAB3D 604350 +HGNC:17063 RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding gene gene with protein product Approved 2q21.3 02q21.3 "RAB3GAP|KIAA0066|RAB3GAP130|WARBM1" RAB3 GTPase activating protein subunit 1 (catalytic) 2005-08-23 2015-11-18 2015-11-18 22930 ENSG00000115839 OTTHUMG00000154889 uc002tuj.4 D31886 NM_012233 "CCDS33294|CCDS54402" Q15042 "9030515|15696165" MGI:2445001 RGD:1306487 RAB3GAP1 602536 118194 +HGNC:17168 RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding gene gene with protein product Approved 1q41 01q41 "RAB3-GAP150|KIAA0839|DKFZP434D245|SPG69" RAB3 GTPase activating protein subunit 2 (non-catalytic) 2005-08-23 2015-11-18 2015-11-18 25782 ENSG00000118873 OTTHUMG00000037139 uc057pnr.1 AB020646 NM_012414 CCDS31028 Q9H2M9 "15696165|16532399|24482476" MGI:1916043 RGD:1311518 RAB3GAP2 609275 118200 +HGNC:9780 RAB3IL1 RAB3A interacting protein like 1 protein-coding gene gene with protein product Approved 11q12.2-q12.3 11q12.2-q12.3 GRAB guanine nucleotide exchange factor for Rab3A RAB3A interacting protein (rabin3)-like 1 1998-07-30 2016-04-26 2016-10-11 5866 ENSG00000167994 OTTHUMG00000167524 uc001nso.5 AF084557 NM_013401 "CCDS8014|CCDS60809" Q8TBN0 11516400 MGI:1922010 RGD:619764 RAB3IL1 +HGNC:16508 RAB3IP RAB3A interacting protein protein-coding gene gene with protein product Approved 12q15 12q15 "RABIN3|FLJ22548|RABIN8" rabin3 2001-11-12 2013-01-22 2015-08-25 117177 ENSG00000127328 OTTHUMG00000169437 uc001svp.4 NM_022456 "CCDS8993|CCDS8995|CCDS8996|CCDS41811|CCDS44942" Q96QF0 12221131 MGI:105933 RGD:620650 RAB3IP 608686 +HGNC:9781 RAB4A RAB4A, member RAS oncogene family protein-coding gene gene with protein product Approved 1q42.13 01q42.13 HRES-1/RAB4 RAB4 RAB, member RAS oncogene GTPases 388 1989-09-11 2002-02-28 2016-10-05 5867 ENSG00000168118 OTTHUMG00000037627 uc001hth.5 BC004309 NM_004578 "CCDS31050|CCDS73046" P20338 MGI:105069 RGD:3529 RAB4A 179511 +HGNC:9782 RAB4B RAB4B, member RAS oncogene family protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ78649|MGC52123" "ras-related GTP-binding protein 4b|small GTP binding protein RAB4B" RAB, member RAS oncogene GTPases 388 2000-05-31 2015-09-02 53916 ENSG00000167578 OTTHUMG00000182694 uc002opd.3 AF165522 NM_016154 CCDS33030 P61018 MGI:105071 RGD:620931 RAB4B 612945 +HGNC:44465 RAB4B-EGLN2 RAB4B-EGLN2 readthrough (NMD candidate) other readthrough Approved 19q13.2 19q13.2 RERT-lncRNA RAB4B-EGLN2 readthrough long non-coding RNA 2012-10-10 2013-05-09 2013-05-09 100529264 ENSG00000171570 OTTHUMG00000182702 uc060yxf.1 AK291385 NR_037791 23026137 +HGNC:9783 RAB5A RAB5A, member RAS oncogene family protein-coding gene gene with protein product Approved 3p24.3 03p24.3 RAS-associated protein RAB5A RAB5 RAB, member RAS oncogene GTPases 388 1990-01-22 2015-06-29 5868 ENSG00000144566 OTTHUMG00000129889 uc003cbn.4 NM_004162 "CCDS2633|CCDS77710" P20339 1999336 MGI:105926 RGD:620936 RAB5A 179512 +HGNC:9784 RAB5B RAB5B, member RAS oncogene family protein-coding gene gene with protein product Approved 12q13 12q13 RAB, member RAS oncogene GTPases 388 1994-08-30 2015-08-25 5869 ENSG00000111540 OTTHUMG00000169682 uc001siw.3 XM_005269051 "CCDS8900|CCDS58244" P61020 "1541686|10403367" MGI:105938 RGD:1306489 RAB5B 179514 +HGNC:9785 RAB5C RAB5C, member RAS oncogene family protein-coding gene gene with protein product Approved 17q21.2 17q21.2 RAB5CL "RAB, member of RAS oncogene family-like|RAB5C, member of RAS oncogene family" RABL RAB, member RAS oncogene GTPases 388 1999-10-04 2013-02-15 5878 ENSG00000108774 OTTHUMG00000169703 uc060fhb.1 U18420 NM_004583 "CCDS11419|CCDS58551" P51148 8646882 MGI:105306 RGD:1307095 RAB5C 604037 +HGNC:45104 RAB5CP1 RAB5C, member RAS oncogene family pseudogene 1 pseudogene pseudogene Approved 10q22.2 10q22.2 2013-02-15 2013-02-15 100420734 ENSG00000213731 OTTHUMG00000018501 NG_025447 PGOHUM00000261087 +HGNC:45106 RAB5CP2 RAB5C, member RAS oncogene family pseudogene 2 pseudogene pseudogene Approved 5q14.3 05q14.3 2013-02-15 2013-02-15 133789 ENSG00000251356 OTTHUMG00000162620 NG_021889 PGOHUM00000261413 +HGNC:9786 RAB6A RAB6A, member RAS oncogene family protein-coding gene gene with protein product Approved 11q13.4 11q13.4 RAB6 RAB, member RAS oncogene GTPases 388 1990-01-22 2016-10-05 5870 ENSG00000175582 OTTHUMG00000134308 uc001oue.4 AF130986 NM_001243718 "CCDS8223|CCDS8224|CCDS58155|CCDS58156" P20340 MGI:894313 RGD:619737 RAB6A 179513 +HGNC:14902 RAB6B RAB6B, member RAS oncogene family protein-coding gene gene with protein product Approved 3q22.1 03q22.1 RAB, member RAS oncogene GTPases 388 2001-03-13 2015-09-02 51560 ENSG00000154917 OTTHUMG00000159749 uc003epy.4 AF166492 XM_011512893 CCDS3082 Q9NRW1 MGI:107283 RGD:1309958 RAB6B 615852 +HGNC:16525 RAB6C RAB6C, member RAS oncogene family protein-coding gene gene with protein product Approved 2q21.1 02q21.1 WTH3 RAB, member RAS oncogene GTPases 388 2001-09-14 2015-09-04 84084 ENSG00000222014 OTTHUMG00000153487 uc002tpx.2 AF124200 NM_032144 CCDS46408 Q9H0N0 "11054569|17426708" RAB6C 612909 +HGNC:49278 RAB6C-AS1 RAB6C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q21.1 02q21.1 2013-10-15 2013-10-15 100131320 ENSG00000225449 OTTHUMG00000153499 NR_036537 +HGNC:9788 RAB7A RAB7A, member RAS oncogene family protein-coding gene gene with protein product Approved 3q21.3 03q21.3 RAB7 RAB7, member RAS oncogene family RAB, member RAS oncogene GTPases 388 1999-03-24 2007-01-15 2007-01-15 2016-10-12 7879 ENSG00000075785 OTTHUMG00000159812 uc003eks.2 X93499 NM_004637 CCDS3052 P51149 "9126495|9428630" MGI:105068 RGD:61908 LRG_266|http://www.lrg-sequence.org/LRG/LRG_266 RAB7A 602298 118205 +HGNC:30513 RAB7B RAB7B, member RAS oncogene family protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "MGC9726|MGC16212" RAB, member RAS oncogene GTPases 388 2004-06-28 2015-08-25 338382 ENSG00000276600 OTTHUMG00000189246 uc031vld.2 AY094596 NM_177403 "CCDS73011|CCDS76258" Q96AH8 15144907 MGI:2442295 RGD:1562617 +HGNC:7007 RAB8A RAB8A, member RAS oncogene family protein-coding gene gene with protein product Approved 19p13.11 19p13.11 RAB8 MEL mel transforming oncogene (derived from cell line NK14) RAB, member RAS oncogene GTPases 388 1986-01-01 2004-01-30 2004-01-30 2016-01-15 4218 ENSG00000167461 OTTHUMG00000182238 uc002ndn.5 NM_005370 CCDS12339 P61006 "1886711|8408203" MGI:96960 RGD:621144 RAB8A 165040 +HGNC:30273 RAB8B RAB8B, member RAS oncogene family protein-coding gene gene with protein product Approved 15q22.2 15q22.2 RAB, member RAS oncogene GTPases 388 2004-01-29 2016-10-05 51762 ENSG00000166128 OTTHUMG00000132862 uc002alz.4 AL833365 NM_016530 CCDS10183 Q92930 "9030196|18772196" MGI:2442982 RGD:628764 RAB8B 613532 +HGNC:9792 RAB9A RAB9A, member RAS oncogene family protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 RAB9 RAB9, member RAS oncogene family RAB, member RAS oncogene GTPases 388 1999-03-24 2007-01-15 2007-01-15 2014-11-18 9367 ENSG00000123595 OTTHUMG00000021156 uc004cvm.5 U44103 NM_004251 CCDS14156 P51151 9126495 MGI:1890695 RGD:619740 RAB9A 300284 +HGNC:38104 RAB9AP1 RAB9A, member RAS oncogene family pseudogene 1 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-04-19 2016-10-05 100287200 ENSG00000232910 OTTHUMG00000044985 NG_023018 PGOHUM00000234044 +HGNC:38106 RAB9AP2 RAB9A, member RAS oncogene family pseudogene 2 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-04-19 2010-07-23 2014-11-19 100287542 ENSG00000223856 OTTHUMG00000045292 NG_022966 PGOHUM00000233874 +HGNC:38107 RAB9AP3 RAB9A, member RAS oncogene family pseudogene 3 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-04-19 2010-07-23 2016-10-05 100287577 ENSG00000223655 OTTHUMG00000045262 NG_004755 PGOHUM00000233878 +HGNC:38108 RAB9AP4 RAB9A, member RAS oncogene family pseudogene 4 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-04-19 2010-07-23 2014-11-19 100288397 ENSG00000235479 OTTHUMG00000041986 NG_004636 PGOHUM00000233995 +HGNC:38109 RAB9AP5 RAB9A, member RAS oncogene family pseudogene 5 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-04-19 2010-07-23 2014-11-19 100287234 ENSG00000231423 OTTHUMG00000044991 NG_022949 PGOHUM00000234048 +HGNC:14090 RAB9B RAB9B, member RAS oncogene family protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 RAB9L RAB, member RAS oncogene GTPases 388 2002-02-28 2015-02-16 51209 ENSG00000123570 OTTHUMG00000022112 uc004ell.3 AB036693 NM_016370 CCDS14515 Q9NP90 11043518 MGI:2442454 RGD:1562951 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RAB9B RAB9B 300285 +HGNC:9793 RAB9BP1 RAB9B, member RAS oncogene family pseudogene 1 pseudogene pseudogene Approved 5q21.2-q21.3 05q21.2-q21.3 RAB9P1 RAB9, member RAS oncogene family, pseudogene 1 1999-03-24 2010-04-19 2010-04-19 2016-10-11 9366 ENSG00000232159 OTTHUMG00000164279 U44105 NR_000039 9126495 PGOHUM00000235722 +HGNC:9759 RAB10 RAB10, member RAS oncogene family protein-coding gene gene with protein product Approved 2p23.3 02p23.3 ras-related GTP-binding protein RAB, member RAS oncogene GTPases 388 1999-07-30 2014-11-18 10890 ENSG00000084733 OTTHUMG00000094796 uc002rgv.4 AF106681 NM_016131 CCDS1720 P61026 7688123 MGI:105066 RGD:620879 RAB10 612672 +HGNC:9760 RAB11A RAB11A, member RAS oncogene family protein-coding gene gene with protein product Approved 15q22.31 15q22.31 YL8 RAB, member RAS oncogene GTPases 388 1999-02-09 2014-11-19 8766 ENSG00000103769 OTTHUMG00000133162 uc002apk.4 X56740 NM_004663 "CCDS10212|CCDS58373" P62491 "1704119|9662449" MGI:1858202 RGD:619762 RAB11A 605570 +HGNC:45188 RAB11AP1 RAB11A, member RAS oncogene family pseudogene 1 pseudogene pseudogene Approved 10q23.33 10q23.33 2013-03-05 2013-03-05 100129731 ENSG00000227995 OTTHUMG00000018778 NG_022154 PGOHUM00000258503 +HGNC:45189 RAB11AP2 RAB11A, member RAS oncogene family pseudogene 2 pseudogene pseudogene Approved 12q14.3 12q14.3 2013-03-05 2013-03-05 106480447 ENSG00000255976 OTTHUMG00000169050 NG_043433 PGOHUM00000239504 +HGNC:9761 RAB11B RAB11B, member RAS oncogene family protein-coding gene gene with protein product Approved 19p13.2 19p13.2 H-YPT3 RAB, member RAS oncogene GTPases 388 1999-02-23 2015-08-25 9230 ENSG00000185236 OTTHUMG00000182278 uc002mju.5 X79780 NM_004218 CCDS12201 Q15907 7811277 MGI:99425 RGD:68369 RAB11B 604198 +HGNC:44178 RAB11B-AS1 RAB11B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19p13.2 19p13.2 RAB11B antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100507567 ENSG00000269386 uc002mjt.5 BC014506 NR_038237 +HGNC:30265 RAB11FIP1 RAB11 family interacting protein 1 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "RCP|FLJ22622|FLJ22524|Rab11-FIP1" RAB11 family interacting protein 1 (class I) C2 domain containing 823 2004-07-22 2016-04-29 2016-10-05 80223 ENSG00000156675 OTTHUMG00000164026 uc003xkn.3 AK092296 NM_025151 "CCDS34881|CCDS34882" Q6WKZ4 "11786538|11495908" MGI:1923017 RGD:1562965 RAB11FIP1 608737 +HGNC:42366 RAB11FIP1P1 RAB11 family interacting protein 1 pseudogene 1 pseudogene pseudogene Approved Xq13.2 Xq13.2 RAB11 family interacting protein 1 (class I) pseudogene 1 2011-07-05 2016-04-29 2016-04-29 646080 ENSG00000228492 OTTHUMG00000021849 NG_007008 PGOHUM00000257272 +HGNC:29152 RAB11FIP2 RAB11 family interacting protein 2 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 "KIAA0941|nRip11|Rab11-FIP2" RAB11 family interacting protein 2 (class I) C2 domain containing 823 2004-07-22 2016-04-29 2016-10-05 22841 ENSG00000107560 OTTHUMG00000019128 uc001ldj.2 AY037299 NM_014904 "CCDS7602|CCDS81512" Q7L804 "11994279|10231032" MGI:1922248 RGD:1308538 RAB11FIP2 608599 +HGNC:17224 RAB11FIP3 RAB11 family interacting protein 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "KIAA0665|Rab11-FIP3|eferin" arfophilin-1 RAB11 family interacting protein 3 (class II) EF-hand domain containing 863 2004-07-22 2016-04-29 2016-04-29 9727 ENSG00000090565 OTTHUMG00000047843 uc002chf.4 AB014565 NM_014700 "CCDS32351|CCDS45364" O75154 "9734811|11481332" MGI:2444431 RGD:1308952 RAB11FIP3 608738 +HGNC:30267 RAB11FIP4 RAB11 family interacting protein 4 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "RAB11-FIP4|KIAA1821|MGC11316|FLJ00131" RAB11 family interacting protein 4 (class II) EF-hand domain containing 863 2004-07-22 2016-04-29 2016-04-29 84440 ENSG00000131242 OTTHUMG00000132787 uc032fao.2 AB058724 NM_032932 "CCDS11267|CCDS76985" Q86YS3 "11347906|11468690" MGI:2442920 RGD:1305063 RAB11FIP4 611999 +HGNC:24845 RAB11FIP5 RAB11 family interacting protein 5 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 "GAF1|KIAA0857|RIP11|pp75" RAB11 family interacting protein 5 (class I) C2 domain containing 823 2004-07-22 2016-04-29 2016-10-05 26056 ENSG00000135631 OTTHUMG00000129779 uc002siu.4 AF334812 NM_015470 CCDS1923 Q9BXF6 "10048485|11163216" MGI:1098586 RGD:1592069 RAB11FIP5 605536 +HGNC:31332 RAB12 RAB12, member RAS oncogene family protein-coding gene gene with protein product Approved 18p11.22 18p11.22 RAB, member RAS oncogene GTPases 388 2005-02-09 2006-12-18 201475 ENSG00000206418 OTTHUMG00000178949 uc002knp.4 XM_113967 CCDS42410 Q6IQ22 MGI:894284 RGD:3527 RAB12 616448 +HGNC:9762 RAB13 RAB13, member RAS oncogene family protein-coding gene gene with protein product Approved 1q21.3 01q21.3 RAB, member RAS oncogene GTPases 388 1998-01-21 2016-10-05 5872 ENSG00000143545 OTTHUMG00000036589 uc001fdt.3 X75593 NM_002870 "CCDS1058|CCDS72921" P51153 8294494 MGI:1927232 RGD:620880 RAB13 602672 +HGNC:16524 RAB14 RAB14, member RAS oncogene family protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "FBP|RAB-14" "F protein-binding protein 1|bA165P4.3 (member RAS oncogene family)|small GTP binding protein RAB14" RAB, member RAS oncogene GTPases 388 2001-09-14 2015-02-02 51552 ENSG00000119396 OTTHUMG00000020582 uc004blc.4 AF152463 NM_016322 CCDS6827 P61106 "9792283|15004230" MGI:1915615 RGD:620881 RAB14 612673 +HGNC:20150 RAB15 RAB15, member RAS oncogene family protein-coding gene gene with protein product Approved 14q23.3 14q23.3 RAB, member RAS oncogene GTPases 388 2002-12-18 2012-02-28 2016-10-05 376267 ENSG00000139998 OTTHUMG00000142810 uc021rut.2 BC014511 NM_198686 "CCDS9768|CCDS76691|CCDS81812" P59190 11697911 MGI:1916865 RGD:735172 RAB15 +HGNC:16523 RAB17 RAB17, member RAS oncogene family protein-coding gene gene with protein product Approved 2q37.3 02q37.3 RAB, member RAS oncogene GTPases 388 2001-09-14 2015-08-25 64284 ENSG00000124839 OTTHUMG00000133299 uc002vwz.3 AK022600 XM_017004693 CCDS2520 Q9H0T7 9624171 MGI:104640 RGD:1562478 RAB17 602206 +HGNC:14244 RAB18 RAB18, member RAS oncogene family protein-coding gene gene with protein product Approved 10p12.1 10p12.1 RAB, member RAS oncogene GTPases 388 2000-12-12 2016-10-05 22931 ENSG00000099246 OTTHUMG00000017861 uc001itv.5 AJ277145 NM_021252 "CCDS7155|CCDS58073|CCDS73080|CCDS73081" Q9NP72 10648831 MGI:102790 RGD:1308905 RAB18 602207 268016 +HGNC:19982 RAB19 RAB19, member RAS oncogene family protein-coding gene gene with protein product Approved 7q34 07q34 RAB19B RAB, member RAS oncogene GTPases 388 2007-07-31 2016-04-25 401409 ENSG00000146955 OTTHUMG00000157410 uc010lni.2 XM_005249996 CCDS34762 A4D1S5 MGI:103292 RGD:1565263 RAB19 +HGNC:18260 RAB20 RAB20, member RAS oncogene family protein-coding gene gene with protein product Approved 13q34 13q34 FLJ20429 RAB, member RAS oncogene GTPases 388 2002-02-19 2014-11-18 55647 ENSG00000139832 OTTHUMG00000017343 uc001vqy.4 AK000436 NM_017817 CCDS9512 Q9NX57 11697911 MGI:102789 RGD:1593487 RAB20 +HGNC:18263 RAB21 RAB21, member RAS oncogene family protein-coding gene gene with protein product Approved 12q21.1 12q21.1 KIAA0118 RAB, member RAS oncogene GTPases 388 2002-02-19 2014-09-04 23011 ENSG00000080371 OTTHUMG00000169572 uc001swt.4 AF091035 NM_014999 CCDS9003 Q9UL25 "10887961|11697911|16754960" MGI:894308 RGD:1303150 RAB21 612398 +HGNC:9764 RAB22A RAB22A, member RAS oncogene family protein-coding gene gene with protein product Approved 20q13.32 20q13.32 RAB, member RAS oncogene GTPases 388 2000-05-31 2016-10-05 57403 ENSG00000124209 OTTHUMG00000032844 uc002xyz.4 AF091034 NM_020673 CCDS33497 Q9UL26 MGI:105072 RGD:1311959 RAB22A 612966 +HGNC:14263 RAB23 RAB23, member RAS oncogene family protein-coding gene gene with protein product Approved 6p12.1-p11.2 06p12.1-p11.2 RAB, member RAS oncogene GTPases 388 2000-12-18 2016-10-11 51715 ENSG00000112210 OTTHUMG00000014918 uc003pdt.5 AB034244 NM_016277 CCDS4962 Q9ULC3 MGI:99833 RGD:1306867 RAB23 606144 123373 +HGNC:9765 RAB24 RAB24, member RAS oncogene family protein-coding gene gene with protein product Approved 5q35.3 05q35.3 RAB, member RAS oncogene GTPases 388 2000-05-31 2015-08-25 53917 ENSG00000169228 OTTHUMG00000130849 uc003mfv.5 AF087904 NM_130781 CCDS34300 Q969Q5 MGI:105065 RGD:628624 RAB24 612415 +HGNC:18238 RAB25 RAB25, member RAS oncogene family protein-coding gene gene with protein product Approved 1q22 01q22 CATX-8 RAB, member RAS oncogene GTPases 388 2002-02-18 2014-11-19 57111 ENSG00000132698 OTTHUMG00000017457 uc001fnc.4 AF083124 NM_020387 CCDS41413 P57735 11697911 MGI:1858203 RGD:1308447 RAB25 612942 +HGNC:14259 RAB26 RAB26, member RAS oncogene family protein-coding gene gene with protein product Approved 16p13.3 16p13.3 RAB, member RAS oncogene GTPases 388 2000-12-14 2015-09-02 25837 ENSG00000167964 OTTHUMG00000128829 uc002cou.4 AB027137 XM_011522450 "CCDS10460|CCDS76806" Q9ULW5 11043516 MGI:2443284 RGD:620890 RAB26 605455 +HGNC:9766 RAB27A RAB27A, member RAS oncogene family protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "RAB27|RAM|GS2|HsT18676" RAB, member RAS oncogene GTPases 388 1996-11-15 2016-10-12 5873 ENSG00000069974 OTTHUMG00000131959 uc002acr.4 U38654 "NM_004580|NM_183236" CCDS10153 P51159 7592656 MGI:1861441 RGD:620918 "RAB27Abase: Mutation registry for Griscelli syndrome, type 2 (GS2)|http://structure.bmc.lu.se/idbase/RAB27Abase/|Mutations of the Small Nucleotide-binding Protein 27a Gene|http://www.retina-international.org/files/sci-news/rab27mut.htm|LRG_96|http://www.lrg-sequence.org/LRG/LRG_96" RAB27A 603868 118188 +HGNC:9767 RAB27B RAB27B, member RAS oncogene family protein-coding gene gene with protein product Approved 18q21.2 18q21.2 RAB, member RAS oncogene GTPases 388 1996-11-15 2015-08-25 5874 ENSG00000041353 OTTHUMG00000132710 uc002lfr.4 U57093 NM_004163 CCDS11958 O00194 9066979 MGI:1931295 RGD:620114 RAB27B 603869 +HGNC:9768 RAB28 RAB28, member RAS oncogene family protein-coding gene gene with protein product Approved 4p15.33 04p15.33 RAB, member RAS oncogene GTPases 388 1999-03-24 2016-10-05 9364 ENSG00000157869 OTTHUMG00000090543 uc003gmt.3 X94703 NM_001017979 "CCDS3409|CCDS33961|CCDS54741" P51157 8647132 MGI:1917285 RGD:620891 RAB28 612994 358558 +HGNC:50380 RAB28P1 RAB28, member RAS oncogene family pseudogene 1 pseudogene pseudogene Approved 9p12 09p12 2014-04-24 2014-04-24 100133203 ENSG00000226108 OTTHUMG00000067166 NG_011918 PGOHUM00000236489 +HGNC:50381 RAB28P2 RAB28, member RAS oncogene family pseudogene 2 pseudogene pseudogene Approved 9q13 09q13 2014-04-24 2015-03-04 100129331 ENSG00000236825 OTTHUMG00000013220 NG_011915 PGOHUM00000303861 +HGNC:50382 RAB28P3 RAB28, member RAS oncogene family pseudogene 3 pseudogene pseudogene Approved 9p11.1 09p11.1 2014-04-24 2016-10-05 100132772 ENSG00000227353 OTTHUMG00000013227 NG_011917 PGOHUM00000236106 +HGNC:51548 RAB28P4 RAB28, member RAS oncogene family pseudogene 4 pseudogene pseudogene Approved 9q21.11 09q21.11 2015-03-04 2015-03-04 100132871 ENSG00000276894 OTTHUMG00000188565 NG_011919 PGOHUM00000303916 +HGNC:51547 RAB28P5 RAB28, member RAS oncogene family pseudogene 5 pseudogene pseudogene Approved Xq26.3 Xq26.3 2015-03-04 2015-03-04 100128416 ENSG00000225400 OTTHUMG00000022516 NG_023397 PGOHUM00000305354 +HGNC:9789 RAB29 RAB29, member RAS oncogene family protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "RAB7L|RAB7L1" RAB7, member RAS oncogene family-like 1 RAB, member RAS oncogene GTPases 388 1999-01-11 2014-04-25 2014-04-25 2016-10-05 8934 ENSG00000117280 OTTHUMG00000035998 D84488 NM_003929 "CCDS1459|CCDS44301|CCDS44302" O14966 "9284931|22022256" MGI:2385107 RGD:620892 603949 +HGNC:9770 RAB30 RAB30, member RAS oncogene family protein-coding gene gene with protein product Approved 11q14.1 11q14.1 RAB, member RAS oncogene GTPases 388 2000-02-16 2015-02-02 27314 ENSG00000137502 OTTHUMG00000166973 uc001ozu.5 U57092 NM_014488 CCDS8264 Q15771 "8863739|9792283" MGI:1923235 RGD:1309507 RAB30 605693 +HGNC:48672 RAB30-AS1 RAB30 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 11q14.1 11q14.1 2013-06-06 2013-06-06 100506233 ENSG00000246067 OTTHUMG00000167010 NR_038903 +HGNC:9771 RAB31 RAB31, member RAS oncogene family protein-coding gene gene with protein product Approved 18p11.22 18p11.22 Rab22B RAB, member RAS oncogene GTPases 388 1999-08-20 2015-09-02 11031 ENSG00000168461 OTTHUMG00000178513 uc002kog.3 U59877 XM_017025528 CCDS45826 Q13636 8863739 MGI:1914603 RGD:628598 RAB31 605694 +HGNC:9772 RAB32 RAB32, member RAS oncogene family protein-coding gene gene with protein product Approved 6q24.3 06q24.3 "RAB, member RAS oncogene GTPases|A-kinase anchoring proteins" "388|396" 1999-08-12 2016-10-05 10981 ENSG00000118508 OTTHUMG00000015755 uc003qln.2 U71127 NM_006834 CCDS5210 Q13637 MGI:1915094 RGD:1559997 RAB32 612906 +HGNC:9773 RAB33A RAB33A, member RAS oncogene family protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 RabS10 RAB, member RAS oncogene GTPases 388 1999-03-24 2016-10-05 9363 ENSG00000134594 OTTHUMG00000022391 uc004evl.4 D14889 NM_004794 CCDS14621 Q14088 "7688322|9512502" MGI:109493 RGD:1563280 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RAB33A RAB33A 300333 +HGNC:16075 RAB33B RAB33B, member RAS oncogene family protein-coding gene gene with protein product Approved 4q31.1 04q31.1 DKFZP434G099 RAB, member RAS oncogene GTPases 388 2001-09-14 2016-10-05 83452 ENSG00000172007 OTTHUMG00000133384 uc003ihv.4 AF350420 NM_031296 CCDS3747 Q9H082 MGI:1330805 RGD:1308353 RAB33B 605950 311424 +HGNC:16519 RAB34 RAB34, member RAS oncogene family protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "RAB39|RAH" RAB, member RAS oncogene GTPases 388 2001-09-14 2014-11-19 83871 ENSG00000109113 OTTHUMG00000132680 uc002hch.3 AF322067 NM_031934 "CCDS11240|CCDS45636|CCDS54101|CCDS58536" "P0DI83|Q9BZG1" 12446704 MGI:104606 RGD:1305058 RAB34 610917 +HGNC:9774 RAB35 RAB35, member RAS oncogene family protein-coding gene gene with protein product Approved 12q24.23 12q24.23 H-ray RAB, member RAS oncogene GTPases 388 1999-09-29 2016-10-05 11021 ENSG00000111737 OTTHUMG00000169159 uc001txm.2 X79781 XM_017018723 "CCDS41846|CCDS53836" Q15286 MGI:1924657 RGD:1306362 RAB35 604199 +HGNC:9775 RAB36 RAB36, member RAS oncogene family protein-coding gene gene with protein product Approved 22q11.23 22q11.23 RAB, member RAS oncogene GTPases 388 1999-06-10 2016-10-05 9609 ENSG00000100228 OTTHUMG00000150601 uc002zwv.2 AB023061 NM_004914 CCDS13805 O95755 "9920784|10591208" MGI:1924127 RGD:1596098 RAB36 605662 +HGNC:30268 RAB37 RAB37, member RAS oncogene family protein-coding gene gene with protein product Approved 17q25.1 17q25.1 RAB, member RAS oncogene GTPases 388 2004-01-26 2016-10-05 326624 ENSG00000172794 OTTHUMG00000134282 uc010wrc.3 BC040547 NM_175738 "CCDS11703|CCDS32722|CCDS54161|CCDS54162|CCDS82198" Q96AX2 10722846 MGI:1929945 RGD:2319982 RAB37 609956 +HGNC:9776 RAB38 RAB38, member RAS oncogene family protein-coding gene gene with protein product Approved 11q14.2 11q14.2 NY-MEL-1 RAB, member RAS oncogene GTPases 388 1999-09-16 2016-10-05 23682 ENSG00000123892 OTTHUMG00000167288 uc001pcj.3 AF235022 XM_017017455 CCDS8281 P57729 10910072 MGI:1919683 RGD:628752 RAB38 606281 +HGNC:16521 RAB39A RAB39A, member RAS oncogene family protein-coding gene gene with protein product Approved 11q22.3 11q22.3 rab-related GTP-binding protein RAB39 RAB39, member RAS oncogene family RAB, member RAS oncogene GTPases 388 2001-09-14 2011-11-22 2011-11-22 2014-11-19 54734 ENSG00000179331 OTTHUMG00000166367 uc001pjt.4 X99962 NM_017516 CCDS8338 Q14964 9119394 MGI:2442855 RGD:1311286 +HGNC:16499 RAB39B RAB39B, member RAS oncogene family protein-coding gene gene with protein product Approved Xq28 Xq28 MRX72 mental retardation, X-linked 72 "X-linked mental retardation|RAB, member RAS oncogene GTPases" "103|388" 2001-09-26 2015-09-02 116442 ENSG00000155961 OTTHUMG00000022659 uc004fne.5 AY052478 NM_171998 CCDS14766 Q96DA2 "12438742|20159109" MGI:1915040 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RAB39B RAB39B 300774 225332 +HGNC:18283 RAB40A RAB40A, member RAS oncogene family protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "RAR2A|Rar-2" RAB, member RAS oncogene GTPases 388 2002-02-22 2016-10-05 142684 ENSG00000172476 OTTHUMG00000022100 uc004ekk.4 AF132748 XM_005262083 CCDS35357 Q8WXH6 11697911 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RAB40A RAB40A +HGNC:25410 RAB40AL RAB40A, member RAS oncogene family-like protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "RAR2|RLGP" Ras like GTPase 2005-04-11 2016-10-05 282808 ENSG00000102128 OTTHUMG00000022084 uc004ejs.4 BC101169 NM_001031834 CCDS35353 P0C0E4 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RAB40AL RAB40AL 300405 +HGNC:18284 RAB40B RAB40B, member RAS oncogene family protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "SEC4L|RAR" RAB, member RAS oncogene GTPases 388 2002-02-22 2015-08-25 10966 ENSG00000141542 OTTHUMG00000177806 uc002kft.4 U05227 XM_011523528 CCDS11816 Q12829 11697911 MGI:2183451 RGD:1305663 RAB40B +HGNC:18285 RAB40C RAB40C, member RAS oncogene family protein-coding gene gene with protein product Approved 16p13.3 16p13.3 RARL RASL8C RAS-like, family 8, member C RAB, member RAS oncogene GTPases 388 2002-02-22 2003-10-14 2015-09-02 57799 ENSG00000197562 OTTHUMG00000047854 uc021szt.2 Z84779 NM_021168 CCDS10413 Q96S21 "11697911|18485483" MGI:2183454 RGD:727914 RAB40C +HGNC:18293 RAB41 RAB41, member RAS oncogene family protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 RAB41, member RAS homolog family RAB, member RAS oncogene GTPases 388 2002-02-27 2006-04-28 2016-04-25 347517 ENSG00000147127 OTTHUMG00000021772 uc010nkv.3 XM_293398 CCDS35322 Q5JT25 11697911 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RAB41 RAB41 +HGNC:28702 RAB42 RAB42, member RAS oncogene family protein-coding gene gene with protein product Approved 1p35.3 01p35.3 MGC45806 RAB42, member RAS homolog family RAB, member RAS oncogene GTPases 388 2005-09-05 2006-04-28 2014-11-18 115273 ENSG00000188060 OTTHUMG00000003656 uc001bqu.4 BC033175 NM_152304 CCDS325 Q8N4Z0 MGI:2441753 RGD:1593983 RAB42 +HGNC:19799 RAB42P1 RAB42, member RAS oncogene family, pseudogene 1 pseudogene pseudogene Approved 14q32.11 14q32.11 "RAB42|RAB42P" "RAB42, member RAS homolog family|RAB42, member RAS homolog family, pseudogene|RAB42, member RAS oncogene family, pseudogene" 2003-01-13 2010-03-04 2010-03-04 2012-11-02 646996 ENSG00000230997 OTTHUMG00000171015 NG_009574 +HGNC:19983 RAB43 RAB43, member RAS oncogene family protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "RAB41|RAB11B|ISY1" RAB, member RAS oncogene GTPases 388 2004-01-27 2014-11-18 339122 ENSG00000172780 OTTHUMG00000137364 uc021xds.1 AY166852 XM_290714 "CCDS33850|CCDS56275" Q86YS6 15018353 MGI:1917084 RGD:1565300 RAB43 +HGNC:33153 RAB43P1 RAB43 pseudogene 1 pseudogene pseudogene Approved 16q11.2 16q11.2 RAB41P RAB43P RAB43 pseudogene 2006-10-16 2010-03-04 2010-03-04 2012-11-02 440375 ENSG00000259856 OTTHUMG00000175598 NG_005358 15018353 PGOHUM00000259069 +HGNC:21068 RAB44 RAB44, member RAS oncogene family protein-coding gene gene with protein product Approved 6p21.2 06p21.2 dJ431A14.3 "RASD3|RASL13" RASD family, member 3 RAB, member RAS oncogene GTPases 388 2003-11-27 2004-07-01 2004-02-03 2016-10-05 401258 ENSG00000255587 OTTHUMG00000016308 uc010jwm.2 XM_003403440 CCDS75442 Q7Z6P3 MGI:3045302 RGD:1560150 RAB44 +HGNC:9794 RABAC1 Rab acceptor 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "PRA1|PRAF1|YIP3" "PRA1 domain family 1|prenylated Rab acceptor 1" Rab acceptor 1 (prenylated) YIP family 1144 2000-06-16 2016-03-14 2016-03-14 10567 ENSG00000105404 OTTHUMG00000182737 uc002osf.4 AJ133534 NM_006423 CCDS12593 Q9UI14 "10329441|10751420" MGI:1201692 RGD:621002 RABAC1 604925 +HGNC:17677 RABEP1 rabaptin, RAB GTPase binding effector protein 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "neurocrescin|RAB5EP|RABPT5|rabaptin-5" 2003-07-14 2014-11-19 9135 ENSG00000029725 OTTHUMG00000177870 uc032ery.2 AF098638 NM_004703 "CCDS42243|CCDS45592" Q15276 8521472 MGI:1860236 RGD:708568 RABEP1 603616 +HGNC:24817 RABEP2 rabaptin, RAB GTPase binding effector protein 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "FRA|FLJ23282" Rabaptin-5beta 2004-05-26 2015-04-07 79874 ENSG00000177548 OTTHUMG00000176593 uc002drq.4 AK026935 NM_024816 CCDS42140 Q9H5N1 9524116 MGI:1917564 RGD:621416 RABEP2 611869 +HGNC:16896 RABEPK Rab9 effector protein with kelch motifs protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "RAB9P40|bA65N13.1" 2005-06-24 2016-10-05 10244 ENSG00000136933 OTTHUMG00000020674 uc004bpi.4 BC000503 NM_005833 "CCDS6862|CCDS55341" Q7Z6M1 9230071 MGI:2139530 RGD:1310612 RABEPK 605962 +HGNC:39791 RABEPKP1 Rab9 effector protein with kelch motifs pseudogene 1 pseudogene pseudogene Approved 13q21.33 13q21.33 2011-03-29 2011-03-29 100421226 ENSG00000225801 OTTHUMG00000017060 NG_024937 PGOHUM00000248626 +HGNC:17155 RABGAP1 RAB GTPase activating protein 1 protein-coding gene gene with protein product Approved 9q33.2-q33.3 09q33.2-q33.3 "GAPCenA|TBC1D11" "rab6 GTPase activating protein (GAP and centrosome-associated)|TBC1 domain family, member 11" 2004-01-12 2016-10-11 23637 ENSG00000011454 OTTHUMG00000020633 uc011lzh.3 AJ011679 NM_012197 CCDS6848 Q9Y3P9 10202141 MGI:2385139 RGD:1304691 RABGAP1 615882 +HGNC:24663 RABGAP1L RAB GTPase activating protein 1 like protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "HHL|TBC1D18|KIAA0471|FLJ38519" 2004-08-20 2016-06-28 2016-10-05 9910 ENSG00000152061 OTTHUMG00000034899 uc001gjx.4 AF279778 NM_001243765 "CCDS1314|CCDS41437|CCDS55662|CCDS58046|CCDS81407" "B7ZAP0|Q5R372" 10585558 MGI:1352507 RGD:1304620 RABGAP1L 609238 +HGNC:41471 RABGAP1L-IT1 RABGAP1L intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q25.1 01q25.1 RABGAP1L intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 106480742 ENSG00000223525 OTTHUMG00000034938 uc057nls.1 +HGNC:17676 RABGEF1 RAB guanine nucleotide exchange factor 1 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 "rabex-5|RABEX5" RAB guanine nucleotide exchange factor (GEF) 1 VPS9 domain containing 928 2003-07-14 2016-03-15 2016-03-15 27342 ENSG00000154710 OTTHUMG00000129547 uc003tvh.4 AJ250042 NM_014504 "CCDS5535|CCDS69308|CCDS75610" Q9UJ41 "12505986|11098082" MGI:1929459 RGD:1307295 RABGEF1 609700 +HGNC:9795 RABGGTA Rab geranylgeranyltransferase alpha subunit protein-coding gene gene with protein product Approved 14q11.2 14q11.2 PTAR3 protein prenyltransferase alpha subunit repeat containing 3 Prenyltransferase alpha subunit repeat containing 687 1996-08-14 2016-01-20 2016-01-20 5875 ENSG00000100949 OTTHUMG00000171838 uc001wog.5 NM_182836 CCDS45088 Q92696 8954794 MGI:1860443 RGD:621697 RABGGTA 601905 +HGNC:9796 RABGGTB Rab geranylgeranyltransferase beta subunit protein-coding gene gene with protein product Approved 1p31.1 01p31.1 1996-08-14 2016-01-20 2016-10-05 5876 ENSG00000137955 OTTHUMG00000009786 uc001dgy.3 U49245 NM_004582 CCDS669 P53611 "8706741|8954794" MGI:99537 RGD:3530 RABGGTB 179080 +HGNC:9797 RABIF RAB interacting factor protein-coding gene gene with protein product Approved 1q32.1 01q32.1 mss4 RASGRF3 1998-05-14 2015-08-25 5877 ENSG00000183155 OTTHUMG00000041400 uc001gyl.4 S78873 NM_002871 CCDS1428 P47224 "9441742|7619808" MGI:2138605 RGD:1359331 RABIF 603417 +HGNC:9799 RABL2A RAB, member of RAS oncogene family-like 2A protein-coding gene gene with protein product Approved 2q14.1 02q14.1 RAB like GTPases 394 1998-09-29 2016-10-05 11159 ENSG00000144134 OTTHUMG00000047828 uc010flb.4 XM_017003203 "CCDS2118|CCDS77454|CCDS77455|CCDS77456" Q9UBK7 10444334 MGI:1915958 RABL2A 605412 +HGNC:9800 RABL2B RAB, member of RAS oncogene family-like 2B protein-coding gene gene with protein product Approved 22q13.33 22q13.33 RAB like GTPases 394 1998-09-29 2014-11-19 11158 ENSG00000079974 OTTHUMG00000150156 uc062fos.1 NM_001003789 "CCDS14102|CCDS33683|CCDS46738" Q9UNT1 10444334 MGI:1915958 RGD:1306749 RABL2B 605413 +HGNC:18072 RABL3 RAB, member of RAS oncogene family like 3 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 MGC23920 RAB, member of RAS oncogene family-like 3 RAB like GTPases 394 2002-02-18 2016-04-04 2016-04-04 285282 ENSG00000144840 OTTHUMG00000159668 uc003edx.3 BC020832 NM_173825 CCDS3001 Q5HYI8 12477932 MGI:1914907 RGD:1306436 RABL3 +HGNC:24703 RABL6 RAB, member RAS oncogene family-like 6 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "FLJ10101|FLJ13045|pp8875|bA216L13.9|Parf|RBEL1" "Rab-like protein 1|partner of ARF" C9orf86 chromosome 9 open reading frame 86 RAB like GTPases 394 2004-02-19 2012-06-28 2012-06-28 2014-11-19 55684 ENSG00000196642 OTTHUMG00000020947 uc004cji.2 AK094382 NM_024718 "CCDS48058|CCDS55352|CCDS55353" Q3YEC7 "14702039|16582619|17962191|19433581" MGI:2442633 RGD:1307615 RABL6 610615 +HGNC:9801 RAC1 ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "TC-25|p21-Rac1|Rac-1" "Rho family GTPases|Endogenous ligands" "390|542" 1993-11-05 2016-10-05 5879 ENSG00000136238 OTTHUMG00000023540 uc003spx.4 AJ132695 NM_018890 "CCDS5348|CCDS5349" P63000 "2674130|10597294" MGI:97845 RGD:619755 RAC1 602048 +HGNC:31001 RAC1P1 ras-related C3 botulinum toxin substrate 1 pseudogene 1 pseudogene pseudogene Approved 18q11.2 18q11.2 HsT2789 2004-01-05 2014-05-09 387612 ENSG00000266520 OTTHUMG00000179504 NG_005321 PGOHUM00000234900 +HGNC:31414 RAC1P2 ras-related C3 botulinum toxin substrate 1 pseudogene 2 pseudogene pseudogene Approved 4p12 04p12 Psi2Rac1 2004-04-15 2016-10-05 442775 ENSG00000249936 OTTHUMG00000160545 NG_005326 15474301 PGOHUM00000245512 +HGNC:31833 RAC1P3 ras-related C3 botulinum toxin substrate 1 pseudogene 3 pseudogene pseudogene Approved 13q14.11 13q14.11 Psi3Rac1 2004-11-05 2014-11-18 492295 ENSG00000231404 OTTHUMG00000016788 NG_004753 15474301 PGOHUM00000248381 +HGNC:31113 RAC1P4 ras-related C3 botulinum toxin substrate 1 pseudogene 4 pseudogene pseudogene Approved Xq26.3 Xq26.3 Psi4Rac1 RAC4 ras-related C3 botulinum toxin substrate family member 4 2004-02-17 2004-10-15 2004-10-14 2014-11-19 286472 ENSG00000237584 OTTHUMG00000022523 XM_210062 15474301 RAC1P4 PGOHUM00000241574 +HGNC:30593 RAC1P5 ras-related C3 botulinum toxin substrate 1 pseudogene 5 pseudogene pseudogene Approved 4q25 04q25 Psi1Rac1 2004-11-05 2014-05-09 402183 ENSG00000213522 OTTHUMG00000161008 AF542527 NG_005324 15474301 PGOHUM00000245647 +HGNC:42006 RAC1P6 ras-related C3 botulinum toxin substrate 1 pseudogene 6 pseudogene pseudogene Approved 7q31.2 07q31.2 2011-05-31 2011-05-31 100422657 ENSG00000226962 OTTHUMG00000065374 NG_026506 PGOHUM00000232968 +HGNC:42007 RAC1P7 ras-related C3 botulinum toxin substrate 1 pseudogene 7 pseudogene pseudogene Approved 1q42.2 01q42.2 2011-05-31 2011-05-31 100874390 ENSG00000236101 OTTHUMG00000057831 NG_032389 PGOHUM00000244483 +HGNC:42005 RAC1P8 ras-related C3 botulinum toxin substrate 1 pseudogene 8 pseudogene pseudogene Approved 13q21.31 13q21.31 2011-05-31 2011-05-31 100874398 ENSG00000234033 OTTHUMG00000017013 NG_032388 +HGNC:50774 RAC1P9 ras-related C3 botulinum toxin substrate 1 pseudogene 9 pseudogene pseudogene Approved 7p12.1 07p12.1 2014-06-18 2014-06-18 100422658 ENSG00000271306 OTTHUMG00000184468 NG_026567 PGOHUM00000233232 +HGNC:9802 RAC2 ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) protein-coding gene gene with protein product Approved 22q13.1 22q13.1 EN-7 "Rho family GTPases|Endogenous ligands" "390|542" 1993-11-05 2016-10-12 5880 ENSG00000128340 OTTHUMG00000150540 uc003arc.5 M64595 XM_006724286 CCDS13945 P15153 2674130 MGI:97846 RGD:1307568 "RAC2base: Mutation registry for Neutrophil immunodeficiency syndrome|http://structure.bmc.lu.se/idbase/RAC2base/|LRG_97|http://www.lrg-sequence.org/LRG/LRG_97" RAC2 602049 204411 +HGNC:9803 RAC3 ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "Rho family GTPases|Endogenous ligands" "390|542" 1997-07-11 2015-09-02 5881 ENSG00000169750 OTTHUMG00000178455 uc002kdf.4 AF008591 NM_005052 CCDS11798 P60763 MGI:2180784 RGD:1590052 RAC3 602050 +HGNC:9804 RACGAP1 Rac GTPase activating protein 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 MgcRacGAP 1999-09-09 2015-08-25 29127 ENSG00000161800 OTTHUMG00000169811 uc001rvu.3 NM_013277 CCDS8795 Q9H0H5 9497316 MGI:1349423 RGD:1305912 RACGAP1 604980 +HGNC:24689 RACGAP1P Rac GTPase activating protein 1 pseudogene pseudogene pseudogene Approved 12q12 12q12 FKSG42 2006-01-06 2014-11-19 83956 AF334184 NR_026583 PGOHUM00000239430 +HGNC:9805 RACH entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:4399 RACK1 receptor for activated C kinase 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "Gnb2-rs1|H12.3" GNB2L1 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 WD repeat domain containing 362 1999-10-19 2016-01-22 2016-01-22 2016-01-22 10399 ENSG00000204628 OTTHUMG00000163380 uc003mni.2 M24194 NM_006098 CCDS34324 P63244 "8302854|2499885" MGI:101849 RGD:69229 176981 +HGNC:9806 RAD1 RAD1 checkpoint DNA exonuclease protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "HRAD1|REC1" "exonuclease homolog RAD1|checkpoint control protein HRAD1|cell cycle checkpoint protein Hrad1|Rad1-like DNA damage checkpoint|DNA repair exonuclease REC1|RAD1 checkpoint clamp component" "RAD1 (S. pombe) homolog|RAD1 homolog (S. pombe)" Checkpoint clamp complex 1339 1998-07-31 2014-08-08 2016-10-05 5810 ENSG00000113456 OTTHUMG00000090783 uc003jix.4 AF074717 NM_002853 CCDS3905 O60671 "9716408|9828137" MGI:1316678 RGD:1306496 RAD1 603153 3.1.11.2 +HGNC:49479 RAD1P1 RAD1 pseudogene 1 pseudogene pseudogene Approved 10q26.11 10q26.11 RAD1 homolog pseudogene 1 2013-12-20 2014-08-08 2014-08-08 100128880 ENSG00000234569 OTTHUMG00000019152 NG_022192 PGOHUM00000238938 +HGNC:49480 RAD1P2 RAD1 pseudogene 2 pseudogene pseudogene Approved 1q23.1 01q23.1 RAD1 homolog pseudogene 2 2013-12-20 2014-08-08 2014-08-08 100129690 ENSG00000233473 OTTHUMG00000037180 NG_022741 PGOHUM00000244302 +HGNC:9827 RAD9A RAD9 checkpoint clamp component A protein-coding gene gene with protein product Approved 11q13.2 11q13.2 RAD9 "RAD9 (S. pombe) homolog|RAD9 homolog A (S. pombe)" Checkpoint clamp complex 1339 1997-02-03 2003-07-23 2015-06-22 2016-10-05 5883 ENSG00000172613 OTTHUMG00000167670 uc001okr.4 U53174 NM_004584 CCDS8159 Q99638 "8943031|20081369" MGI:1328356 RGD:2319938 RAD9A 603761 +HGNC:21700 RAD9B RAD9 checkpoint clamp component B protein-coding gene gene with protein product Approved 12q24.11 12q24.11 FLJ40346 RAD9 homolog B (S. pombe) 2003-07-21 2015-06-22 2016-10-05 144715 ENSG00000151164 OTTHUMG00000152952 uc001trf.5 NM_152442 "CCDS9148|CCDS66469|CCDS73526|CCDS73527" Q6WBX8 "14611806|24013428" MGI:2385231 RGD:1308223 RAD9B 608368 +HGNC:9807 RAD17 RAD17 checkpoint clamp loader component protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "Rad24|RAD17Sp|CCYC" "RAD1 (S. pombe) homolog|RAD17 homolog (S. pombe)" 1998-07-31 2015-06-22 2016-10-05 5884 ENSG00000152942 OTTHUMG00000099357 uc003jwo.5 AF085736 NM_133344 "CCDS4003|CCDS4004|CCDS4005|CCDS47226" O75943 "9869296|9660800" MGI:1333807 RGD:1309515 RAD17 603139 +HGNC:9808 RAD17P1 RAD17 checkpoint clamp loader component pseudogene 1 pseudogene pseudogene Approved 7p21.1 07p21.1 HRAD17P1 "RAD17 (S. pombe) homolog, pseudogene 1|RAD17 homolog (S. pombe) pseudogene 1" 1999-02-15 2015-06-22 2016-10-05 9207 ENSG00000232400 OTTHUMG00000152462 AJ131309 NG_002929 PGOHUM00000232602 +HGNC:9809 RAD17P2 RAD17 checkpoint clamp loader component pseudogene 2 pseudogene pseudogene Approved 13q14.2 13q14.2 HRAD17P2 "RAD17 (S. pombe) homolog, pseudogene 2|RAD17 homolog (S. pombe) pseudogene 2" 1999-02-15 2015-06-22 2016-10-05 9206 ENSG00000223724 OTTHUMG00000016908 AJ131310 NG_002928 9660800 PGOHUM00000248396 +HGNC:18278 RAD18 RAD18, E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 3p25.3 03p25.3 RNF73 RAD18 homolog (S. cerevisiae) Ring finger proteins 58 2003-07-01 2015-11-27 2015-11-27 56852 ENSG00000070950 OTTHUMG00000090545 uc003brd.4 NM_020165 CCDS2571 Q9NS91 "10884424|10908344" MGI:1890476 RGD:1306993 RAD18 605256 +HGNC:9811 RAD21 RAD21 cohesin complex component protein-coding gene gene with protein product Approved 8q24.11 08q24.11 "KIAA0078|hHR21|SCC1" "sister chromatid cohesion 1|kleisin" "RAD21 (S. pombe) homolog|RAD21 homolog (S. pombe)" Cohesin complex 1060 1996-06-12 2015-06-22 2016-10-12 5885 ENSG00000164754 OTTHUMG00000164959 uc003yod.4 BC050381 NM_006265 CCDS6321 O60216 8812457 MGI:108016 RGD:1594529 LRG_772|http://www.lrg-sequence.org/LRG/LRG_772 RAD21 606462 304234 +HGNC:32158 RAD21-AS1 RAD21 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.11 08q24.11 "C8orf81|NCRNA00255" "chromosome 8 open reading frame 81|non-protein coding RNA 255|RAD21 antisense RNA 1 (non-protein coding)" 2007-08-21 2011-08-11 2012-08-15 2012-10-12 644660 ENSG00000253327 OTTHUMG00000164960 uc003yoe.4 BC031280 XR_040079 +HGNC:16271 RAD21L1 RAD21 cohesin complex component like 1 protein-coding gene gene with protein product Approved 20p13 20p13 "dJ545L17.2|RAD21L" RAD21-like 1 (S. pombe) 2002-02-05 2015-06-22 2015-06-22 642636 ENSG00000244588 OTTHUMG00000031664 uc010gab.1 AL031665 XM_011529317 CCDS46568 Q9H4I0 21527826 MGI:3652039 RGD:1587557 RAD21L1 +HGNC:9812 RAD23A RAD23 homolog A, nucleotide excision repair protein protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "HHR23A|MGC111083" RAD23, yeast homolog, A "RAD23 (S. cerevisiae) homolog A|RAD23 homolog A (S. cerevisiae)" Nucleotide excision repair 1269 1994-07-20 2015-07-09 2016-10-05 5886 ENSG00000179262 OTTHUMG00000180723 uc002mvw.3 NM_005053 "CCDS12289|CCDS59357|CCDS59358" P54725 "7851894|21676658" MGI:105126 RGD:1309899 RAD23A 600061 +HGNC:9813 RAD23B RAD23 homolog B, nucleotide excision repair protein protein-coding gene gene with protein product Approved 9q31.2 09q31.2 "HHR23B|P58|HR23B" "XP-C repair complementing protein|XP-C repair complementing complex 58 kDa" "RAD23 (S. cerevisiae) homolog B|RAD23 homolog B (S. cerevisiae)" Nucleotide excision repair 1269 1994-07-20 2015-07-09 2015-07-09 5887 ENSG00000119318 OTTHUMG00000020446 uc004bde.4 NM_002874 "CCDS6769|CCDS59138" P54727 "7851894|8168482" MGI:105128 RGD:1562958 RAD23B 600062 +HGNC:9814 RAD23BLP RAD23 homolog B-like (S. cerevisiae) pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 "RAD23 (S. cerevisiae) homolog B-like pseudogene|RAD23 homolog B (S. cerevisiae)-like pseudogene" 2000-05-23 2005-09-09 2016-10-05 54034 ENSG00000226298 OTTHUMG00000074344 NG_032020 +HGNC:44509 RAD23BP1 RAD23 homolog B, nucleotide excision repair protein pseudogene 1 pseudogene pseudogene Approved 3p24.3 03p24.3 RAD23 homolog B (S. cerevisiae) pseudogene 1 2012-11-13 2015-07-09 2015-07-09 131185 ENSG00000236570 OTTHUMG00000155345 NG_022240 PGOHUM00000259845 +HGNC:44510 RAD23BP2 RAD23 homolog B, nucleotide excision repair protein pseudogene 2 pseudogene pseudogene Approved 7q21.11 07q21.11 RAD23 homolog B (S. cerevisiae) pseudogene 2 2012-11-13 2015-07-09 2015-07-09 100130572 ENSG00000230244 OTTHUMG00000154684 NG_022568 PGOHUM00000260370 +HGNC:9816 RAD50 RAD50 double strand break repair protein protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "hRad50|RAD50-2" "RAD50 (S. cerevisiae) homolog|RAD50 homolog (S. cerevisiae)|RAD50 homolog, double strand break repair protein" "BRCA1 C complex|MRN complex" "1336|1344" 1999-07-23 2016-01-27 2016-01-27 10111 ENSG00000113522 OTTHUMG00000059613 uc003kxi.4 Z75311 NM_005732 CCDS34233 Q92878 "8756642|9705271" MGI:109292 RGD:621542 RAD50 604040 242004 +HGNC:9817 RAD51 RAD51 recombinase protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "HsRad51|HsT16930|BRCC5|FANCR" BRCA1/BRCA2-containing complex, subunit 5 "RAD51A|RECA" "RAD51 (S. cerevisiae) homolog (E coli RecA homolog)|RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae)|RAD51 homolog (S. cerevisiae)" Fanconi anemia complementation groups 548 1993-05-26 2013-07-02 2015-08-10 5888 ENSG00000051180 OTTHUMG00000130067 uc001zmi.5 D13804 "NM_002875|NM_133487" "CCDS10062|CCDS53931|CCDS53932" Q06609 "8358431|8479919|26253028" MGI:97890 RGD:1563603 RAD51 179617 118208 +HGNC:48621 RAD51-AS1 RAD51 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 15q15.1 15q15.1 TODRA transcribed in the opposite direction of RAD51 2013-05-24 2013-05-24 2015-08-05 100505648 ENSG00000245849 OTTHUMG00000166119 AK125393 NR_040058 26230935 +HGNC:16956 RAD51AP1 RAD51 associated protein 1 protein-coding gene gene with protein product Approved 12p13.32 12p13.32 PIR51 2004-09-16 2016-10-05 10635 ENSG00000111247 OTTHUMG00000168125 uc001qmu.4 AF006259 NM_006479 "CCDS8529|CCDS44805" Q96B01 9396801 MGI:1098224 RGD:1597431 RAD51AP1 603070 +HGNC:49646 RAD51AP1P1 RAD51 associated protein 1 pseudogene 1 pseudogene pseudogene Approved 3q22.3 03q22.3 2014-01-28 2014-01-28 100420047 ENSG00000214283 OTTHUMG00000159774 NG_025631 PGOHUM00000237784 +HGNC:34417 RAD51AP2 RAD51 associated protein 2 protein-coding gene gene with protein product Approved 2p24.2 02p24.2 FLJ17540 2009-01-13 2015-08-25 729475 ENSG00000214842 OTTHUMG00000151761 uc002rcl.2 AK310498 NM_001099218 CCDS42656 Q09MP3 16990250 MGI:3644580 RGD:2322652 RAD51AP2 +HGNC:9822 RAD51B RAD51 paralog B protein-coding gene gene with protein product Approved 14q24.1 14q24.1 "REC2|hREC2|R51H2" RAD51L1 "RAD51 (S. cerevisiae)-like 1|RAD51-like 1 (S. cerevisiae)|RAD51 homolog B (S. cerevisiae)" 1997-09-12 2011-07-01 2013-07-02 2016-10-05 5890 ENSG00000182185 OTTHUMG00000157530 uc001xkd.4 U84138 NM_001321818 "CCDS9789|CCDS9790|CCDS81815" O15315 "6261043|9207106" MGI:1099436 RGD:1560681 RAD51B 602948 +HGNC:9820 RAD51C RAD51 paralog C protein-coding gene gene with protein product Approved 17q22 17q22 "RAD51L2|FANCO" "RAD51 (S. cerevisiae) homolog C|RAD51 homolog C (S. cerevisiae)" Fanconi anemia complementation groups 548 1998-02-26 2013-07-02 2016-10-12 5889 ENSG00000108384 OTTHUMG00000141292 uc002iwu.5 AF029670 NM_058216 "CCDS11611|CCDS45745" O43502 "9469824|22167183" MGI:2150020 RGD:1563765 LRG_314|http://www.lrg-sequence.org/LRG/LRG_314 RAD51C 602774 229784 +HGNC:9823 RAD51D RAD51 paralog D protein-coding gene gene with protein product Approved 17q12 17q12 "R51H3|Trad|HsTRAD" "recombination repair protein|DNA repair protein RAD51 homolog 4" RAD51L3 "RAD51 (S. cerevisiae)-like 3|RAD51-like 3 (S. cerevisiae)|RAD51 homolog D (S. cerevisiae)" 1998-05-27 2011-07-01 2013-07-02 2016-10-12 5892 ENSG00000185379 OTTHUMG00000132930 uc002hir.4 AF034956 NM_002878 "CCDS11287|CCDS11288|CCDS45646" O75771 9570954 MGI:1261809 RGD:1306944 LRG_516|http://www.lrg-sequence.org/LRG/LRG_516 RAD51D 602954 297209 +HGNC:9824 RAD52 RAD52 homolog, DNA repair protein protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "RAD52 (S. cerevisiae) homolog|RAD52 homolog (S. cerevisiae)" 1995-03-28 2015-07-10 2016-10-05 5893 ENSG00000002016 OTTHUMG00000090361 uc001qiu.2 NM_134424 "CCDS8507|CCDS76500|CCDS76501" P43351 "7774919|18313388|19506022|24340529" MGI:101949 RGD:1304975 RAD52 600392 +HGNC:17228 RAD54B RAD54 homolog B (S. cerevisiae) protein-coding gene gene with protein product Approved 8q22.1 08q22.1 RDH54 2004-01-22 2015-03-03 25788 ENSG00000197275 OTTHUMG00000133658 uc003ygk.4 AF112481 NM_012415 "CCDS6262|CCDS56546|CCDS75768" Q9Y620 "10362364|10851248" MGI:3605986 RGD:1306507 RAD54B 604289 +HGNC:9826 RAD54L RAD54-like (S. cerevisiae) protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "hHR54|hRAD54|RAD54A" RAD54 (S.cerevisiae)-like 1998-11-04 2001-11-28 2016-10-05 8438 ENSG00000085999 OTTHUMG00000007772 uc009vye.2 X97795 NM_003579 CCDS532 Q92698 8805304 MGI:894697 RGD:1310600 RAD54L 603615 437664 +HGNC:29123 RAD54L2 RAD54-like 2 (S. cerevisiae) protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "KIAA0809|SRISNF2L|ARIP4" AR interacting protein 4 2006-01-17 2015-07-10 23132 ENSG00000164080 OTTHUMG00000152936 uc011bdt.3 AB018352 NM_015106 CCDS33765 Q9Y4B4 19692572 MGI:1933196 RGD:1561889 RAD54L2 +HGNC:22226 RADIL Rap associating with DIL domain protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "FLJ10324|KIAA1849|RASIP2" Ras association and DIL domains PDZ domain containing 1220 2009-01-27 2016-03-15 2016-03-15 55698 ENSG00000157927 OTTHUMG00000151753 uc003snj.2 AB058752 NM_018059 CCDS43544 Q96JH8 "16051602|17704304" MGI:2443088 RGD:1306155 RADIL 611491 +HGNC:9828 RAE1 ribonucleic acid export 1 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 Mnrp41 "RAE1 (RNA export 1, S.pombe) homolog|RAE1 RNA export 1 homolog (S. pombe)" "WD repeat domain containing|Nucleoporins" "362|1051" 1999-07-23 2013-08-28 2014-11-18 8480 ENSG00000101146 OTTHUMG00000032819 uc002xyg.4 U84720 XM_011529087 CCDS13458 P78406 "9370289|9256445" MGI:1913929 RGD:1311540 RAE1 603343 +HGNC:16793 RAET1E retinoic acid early transcript 1E protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "LETAL|bA350J20.7|ULBP4" 2003-04-28 2016-10-05 135250 ENSG00000164520 OTTHUMG00000015796 uc003qnl.1 AF359243 NM_139165 "CCDS5221|CCDS59042|CCDS59043|CCDS59044" Q8TD07 11827464 RGD:1311118 RAET1E 609243 +HGNC:48994 RAET1E-AS1 RAET1E antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q25.1 06q25.1 RAET1G-AS1 2013-07-25 2013-07-25 100652739 ENSG00000223701 OTTHUMG00000015804 NR_045126 +HGNC:16794 RAET1F retinoic acid early transcript 1F pseudogene pseudogene pseudogene Approved 6q24.1-q25.1 06q24.1-q25.1 2003-04-29 2014-11-19 353089 NG_005420 11827464 +HGNC:16795 RAET1G retinoic acid early transcript 1G protein-coding gene gene with protein product Approved 6q25.1 06q25.1 ULBP5 retinoic acid early transcript 1G pseudogene 2003-04-29 2004-11-22 2016-10-05 353091 ENSG00000203722 OTTHUMG00000015802 uc010kii.1 AY172579 XM_017010831 CCDS43514 Q6H3X3 "11827464|15240696" RAET1G 609244 +HGNC:16797 RAET1K retinoic acid early transcript 1K pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 2003-04-29 2012-01-10 646024 ENSG00000218358 OTTHUMG00000015815 AF425244 NR_024045 11827464 PGOHUM00000243416 +HGNC:16798 RAET1L retinoic acid early transcript 1L protein-coding gene gene with protein product Approved 6q25.1 06q25.1 2003-04-29 2016-10-05 154064 ENSG00000155918 OTTHUMG00000015809 uc063sfv.1 AY039682 NM_130900 CCDS5224 Q5VY80 11827464 RAET1L 611047 +HGNC:16799 RAET1M retinoic acid early transcript 1M pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 2003-04-29 2014-11-19 353094 ENSG00000216444 OTTHUMG00000015816 NG_008390 11827464 PGOHUM00000243819 +HGNC:9829 RAF1 Raf-1 proto-oncogene, serine/threonine kinase protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "Raf-1|c-Raf|CRAF" C-Raf proto-oncogene, serine/threonine kinase v-raf-1 murine leukemia viral oncogene homolog 1 "Mitogen-activated protein kinase kinase kinases|RAF family" "654|1157" 1986-01-01 2014-06-26 2016-10-12 5894 ENSG00000132155 OTTHUMG00000129789 uc003bxf.5 X03484 NM_002880 CCDS2612 P04049 1611909 MGI:97847 RGD:3531 LRG_413|http://www.lrg-sequence.org/LRG/LRG_413 RAF1 164760 138722 objectId:2184 +HGNC:9830 RAF1P1 RAF1 pseudogene 1 pseudogene pseudogene Approved 4p16.1 04p16.1 v-raf-1 murine leukemia viral oncogene homolog 1 pseudogene 1 1986-01-01 2014-06-26 2014-11-18 348910 ENSG00000250040 OTTHUMG00000160133 NG_003018 PGOHUM00000245458 +HGNC:18616 RAF1P2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-04-20 +HGNC:9831 RAG1 recombination activating 1 protein-coding gene gene with protein product Approved 11p12 11p12 "RNF74|MGC43321" "recombination activating protein 1|RING finger protein 74|V(D)J recombination-activating protein 1" recombination activating gene 1 Ring finger proteins 58 1990-06-18 2016-08-04 2016-10-12 5896 ENSG00000166349 OTTHUMG00000166392 uc001mwu.5 M29474 NM_000448 CCDS7902 P15918 "1612612|1283330" MGI:97848 RGD:619790 "RAG1base: Mutation registry for autosomal recessive RAG1 deficiency|http://structure.bmc.lu.se/idbase/RAG1base/|LRG_98|http://www.lrg-sequence.org/LRG/LRG_98" RAG1 179615 118215 +HGNC:9832 RAG2 recombination activating 2 protein-coding gene gene with protein product Approved 11p13 11p13 recombination activating gene 2 1990-08-15 2016-08-04 2016-10-12 5897 ENSG00000175097 OTTHUMG00000166393 uc021qgd.2 AF080577 NM_000536 CCDS7903 P55895 1283330 MGI:97849 RGD:1305588 "RAG2base: Mutation registry for autosomal recessive RAG2 deficiency|http://structure.bmc.lu.se/idbase/RAG2base/|LRG_99|http://www.lrg-sequence.org/LRG/LRG_99" RAG2 179616 118218 +HGNC:9834 RAI1 retinoic acid induced 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "DKFZP434A139|SMS|KIAA1820|MGC12824" SMCR Smith-Magenis syndrome chromosome region 1999-04-16 2014-11-19 10743 ENSG00000108557 OTTHUMG00000059314 uc002grm.4 AJ230819 NM_030665 CCDS11188 Q7Z5J4 10036180 MGI:103291 RGD:1308500 RAI1 607642 118220 +HGNC:40496 RAI1-AS1 RAI1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 RAI1 antisense RNA 1 (non-protein coding) 2011-12-05 2012-08-15 2014-11-19 100861516 ENSG00000237328 OTTHUMG00000059315 uc060bxq.1 "BX366317|BX401587" NR_130894 +HGNC:9835 RAI2 retinoic acid induced 2 protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 1998-09-29 2016-10-05 10742 ENSG00000131831 OTTHUMG00000021209 uc022btl.2 Z93242 NM_021785 "CCDS14183|CCDS55374" Q9Y5P3 "10049581|10394933" MGI:1344378 RGD:1560139 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RAI2 RAI2 300217 +HGNC:9837 RAI4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-02-08 +HGNC:9838 RAI5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-02-08 +HGNC:14873 RAI14 retinoic acid induced 14 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "NORPEG|KIAA1334|RAI13|DKFZp564G013" novel retinal pigment epithelial Ankyrin repeat domain containing 403 2001-04-20 2016-10-05 26064 ENSG00000039560 OTTHUMG00000162019 uc003jir.4 AB037755 NM_015577 "CCDS34142|CCDS54837|CCDS54838|CCDS54839" Q9P0K7 11042181 MGI:1922896 RGD:1305942 RAI14 606586 +HGNC:9839 RALA RAS like proto-oncogene A protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "RAS-like protein A|Ras-related protein Ral-A|Ras family small GTP binding protein RALA|ras related GTP binding protein A" RAL v-ral simian leukemia viral oncogene homolog A (ras related) RAS type GTPase family 389 2001-06-22 2016-08-11 2016-10-05 5898 ENSG00000006451 OTTHUMG00000128775 uc003thd.4 NM_005402 CCDS5460 P11233 3292391 MGI:1927243 RGD:619851 RALA 179550 +HGNC:9840 RALB RAS like proto-oncogene B protein-coding gene gene with protein product Approved 2q14.2 02q14.2 ras related GTP binding protein B v-ral simian leukemia viral oncogene homolog B RAS type GTPase family 389 1989-06-30 2016-08-11 2016-08-11 5899 ENSG00000144118 OTTHUMG00000131435 uc002tmk.4 NM_002881 CCDS2131 P11234 MGI:1927244 RGD:619852 RALB 179551 +HGNC:9841 RALBP1 ralA binding protein 1 protein-coding gene gene with protein product Approved 18p11.22 18p11.22 "RLIP76|RIP1|RIP" 2000-02-11 2014-11-19 10928 ENSG00000017797 OTTHUMG00000131596 uc002kob.4 L42542 NM_006788 CCDS11845 Q15311 7673236 MGI:108466 RGD:621134 RALBP1 605801 +HGNC:17770 RALGAPA1 Ral GTPase activating protein catalytic alpha subunit 1 protein-coding gene gene with protein product Approved 14q13.2 14q13.2 "GRIPE|DKFZp667F074|KIAA0884|Tulip1|RalGAPalpha1" "tuberin-like protein 1|GAP-related interacting protein to E12" GARNL1 "GTPase activating RANGAP domain-like 1|GTPase activating Rap/RanGAP domain-like 1" 2003-10-09 2009-09-09 2016-01-26 2016-01-26 253959 ENSG00000174373 OTTHUMG00000170619 uc001wtj.4 AK126975 XM_210022 "CCDS32064|CCDS32065|CCDS61439|CCDS61440|CCDS81797" Q6GYQ0 19520869 MGI:1931050 RGD:620642 RALGAPA1 608884 +HGNC:23203 RALGAPA1P1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudogene pseudogene Approved 9q31.2 09q31.2 DKFZp566D133 GTPase activating RANGAP domain-like 2 "GARNL2|GARNL2P|RALGAPA1P" "GTPase activating RANGAP domain-like 2 pseudogene|GTPase activating Rap/RanGAP domain-like 2 pseudogene" 2003-10-09 2016-01-26 2016-01-26 2016-01-26 26134 ENSG00000229419 OTTHUMG00000020427 AL050050 NG_004673 11221845 PGOHUM00000304431 +HGNC:16207 RALGAPA2 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "dJ1049G11.4|AS250|KIAA1272|RapGAPalpha2" C20orf74 chromosome 20 open reading frame 74 2001-07-17 2009-09-09 2016-01-26 2016-01-26 57186 ENSG00000188559 OTTHUMG00000032010 uc002wrz.4 "AL078634|DQ310704" NM_020343 CCDS46584 Q2PPJ7 "16490346|19520869" MGI:3036245 RGD:1308023 RALGAPA2 +HGNC:29221 RALGAPB Ral GTPase activating protein non-catalytic beta subunit protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "DKFZp781M2411|RalGAPbeta" KIAA1219 KIAA1219 2006-03-23 2009-09-09 2016-01-26 2016-01-26 57148 ENSG00000170471 OTTHUMG00000140270 uc002xiw.5 AB033045 NM_020336 "CCDS13305|CCDS63272" Q86X10 19520869 MGI:2444531 RGD:1306861 RALGAPB +HGNC:9842 RALGDS ral guanine nucleotide dissociation stimulator protein-coding gene gene with protein product Approved 9q34.13-q34.2 09q34.13-q34.2 "RGF|RalGEF|RGDS" 1997-01-20 2016-10-11 5900 ENSG00000160271 OTTHUMG00000020858 uc004cco.5 AB037729 NM_006266 "CCDS6959|CCDS43897|CCDS65172|CCDS65173|CCDS65174" Q12967 7972015 MGI:107485 RGD:3533 RALGDS 601619 +HGNC:16851 RALGPS1 Ral GEF with PH domain and SH3 binding motif 1 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "RALGPS1A|RALGEF2|KIAA0351" Pleckstrin homology domain containing 682 2004-05-17 2014-11-19 9649 ENSG00000136828 OTTHUMG00000020696 uc004bqo.3 AB002349 NM_014636 "CCDS35143|CCDS55344|CCDS55345|CCDS55346" Q5JS13 "9205841|10747847" MGI:1922008 RGD:2319500 RALGPS1 614444 +HGNC:30279 RALGPS2 Ral GEF with PH domain and SH3 binding motif 2 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "KIAA0351|FLJ10244|FLJ25604" Pleckstrin homology domain containing 682 2004-06-28 2016-10-05 55103 ENSG00000116191 OTTHUMG00000035076 uc001glz.5 AK098470 NM_152663 "CCDS1325|CCDS65733" Q86X27 "10747847|12102558" MGI:1925505 RGD:1311537 RALGPS2 +HGNC:15921 RALY RALY heterogeneous nuclear ribonucleoprotein protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "P542|HNRPCL2" "RNA-binding protein (autoantigenic, hnRNP-associated with lethal yellow)|RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse))" RNA binding motif containing 725 2001-06-21 2013-08-06 2016-10-05 22913 ENSG00000125970 OTTHUMG00000032283 uc002xab.4 AF148457 XM_005260334 "CCDS13229|CCDS13230" Q9UKM9 "10500250|23614458" MGI:97850 RGD:1307228 RALY 614663 +HGNC:50743 RALY-AS1 RALY antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q11.22 20q11.22 2014-06-13 2014-06-13 101926888 ENSG00000228265 OTTHUMG00000032279 NR_109885 +HGNC:27036 RALYL RALY RNA binding protein-like protein-coding gene gene with protein product Approved 8q21.2 08q21.2 HNRPCL3 RNA binding motif containing 725 2007-07-25 2015-09-02 138046 ENSG00000184672 OTTHUMG00000164628 uc003yct.5 XM_017013058 "CCDS55252|CCDS55253|CCDS75760|CCDS75761" Q86SE5 12688537 MGI:1924147 RGD:1305844 RALYL 614648 +HGNC:9843 RAMP1 receptor activity modifying protein 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "receptor activity modifying protein 1|receptor (calcitonin) activity modifying protein 1|receptor (G protein-coupled) activity modifying protein 1" Receptor (G protein-coupled) activity modifying proteins 718 2000-07-31 2016-04-01 2016-10-05 10267 ENSG00000132329 OTTHUMG00000133337 uc002vxj.4 AJ001014 NM_005855 "CCDS2522|CCDS77546" O60894 MGI:1858418 RGD:61870 RAMP1 605153 objectId:51 +HGNC:9844 RAMP2 receptor activity modifying protein 2 protein-coding gene gene with protein product Approved 17q12-q21.1 17q12-q21.1 "receptor activity modifying protein 2|receptor (calcitonin) activity modifying protein 2|receptor (G protein-coupled) activity modifying protein 2" Receptor (G protein-coupled) activity modifying proteins 718 2000-07-31 2016-04-01 2016-04-01 10266 ENSG00000131477 OTTHUMG00000180648 uc002ibg.5 AJ001015 NM_005854 CCDS11437 O60895 MGI:1859650 RGD:61872 RAMP2 605154 objectId:52 +HGNC:44358 RAMP2-AS1 RAMP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 2012-08-17 2012-10-12 100190938 ENSG00000197291 uc060fmv.1 "BC018638|BC041021" NR_024461 +HGNC:9845 RAMP3 receptor activity modifying protein 3 protein-coding gene gene with protein product Approved 7p13 07p13 "receptor activity modifying protein 3|receptor (calcitonin) activity modifying protein 3|receptor (G protein-coupled) activity modifying protein 3" Receptor (G protein-coupled) activity modifying proteins 718 2000-07-31 2016-07-27 2016-10-05 10268 ENSG00000122679 OTTHUMG00000023729 uc064dlz.1 AJ001016 NM_005856 CCDS5503 O60896 MGI:1860292 RGD:61873 RAMP3 605155 objectId:53 +HGNC:9846 RAN RAN, member RAS oncogene family protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "ARA24|TC4|Gsp1" RAN family GTPases 391 1996-11-14 2015-09-02 5901 ENSG00000132341 OTTHUMG00000134328 uc001uir.4 M31469 NM_006325 "CCDS9271|CCDS73546" P62826 8421051 MGI:1333112 RGD:620367 RAN 601179 +HGNC:9847 RANBP1 RAN binding protein 1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 HTF9A 1996-11-14 2014-11-18 5902 ENSG00000099901 OTTHUMG00000150490 uc002zro.3 D38076 NM_002882 "CCDS13775|CCDS63408|CCDS74823" P43487 "7616957|10330396" MGI:96269 RGD:1310521 RANBP1 601180 +HGNC:9848 RANBP2 RAN binding protein 2 protein-coding gene gene with protein product Approved 2q13 02q13 "NUP358|ADANE" ANE1 acute necrotizing encephalopathy 1 (autosomal dominant) "Zinc fingers RANBP2-type |Tetratricopeptide repeat domain containing|Cyclophilin peptidylprolyl isomerases|Nucleoporins" "89|769|909|1051" 1996-11-14 2014-11-18 5903 ENSG00000153201 OTTHUMG00000130981 uc002tem.4 D42063 NM_006267 CCDS2079 P49792 "7724562|19118815" MGI:894323 RGD:1560047 RANBP2 601181 173526 +HGNC:9850 RANBP3 RAN binding protein 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 1998-11-30 2014-11-18 8498 ENSG00000031823 OTTHUMG00000180636 uc002mdw.4 Y08698 NM_007322 "CCDS42477|CCDS42478|CCDS45935|CCDS74268" Q9H6Z4 9637251 MGI:1919060 RGD:1589604 RANBP3 603327 +HGNC:26353 RANBP3L RAN binding protein 3 like protein-coding gene gene with protein product Approved 5p13.2 05p13.2 FLJ25422 RAN binding protein 3-like 2006-08-24 2016-01-27 2016-01-27 202151 ENSG00000164188 OTTHUMG00000131110 uc003jkh.4 BC047660 NM_145000 "CCDS3918|CCDS54843" Q86VV4 25755279 MGI:2444654 RGD:1307559 RANBP3L 616391 +HGNC:9851 RANBP6 RAN binding protein 6 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 1999-12-22 2015-09-02 26953 ENSG00000137040 OTTHUMG00000019512 uc003zjr.4 AF039023 NM_012416 "CCDS6467|CCDS78378" O60518 MGI:2683212 RGD:1305165 RANBP6 +HGNC:13727 RANBP9 RAN binding protein 9 protein-coding gene gene with protein product Approved 6p23 06p23 RanBPM Ran Binding Protein in the Microtubule organizing center 2000-12-04 2015-09-02 10048 ENSG00000010017 OTTHUMG00000015642 uc003nbb.3 AB008515 XM_011514205 CCDS4529 Q96S59 9817760 MGI:1928741 RGD:1561940 RANBP9 603854 +HGNC:29285 RANBP10 RAN binding protein 10 protein-coding gene gene with protein product Approved 16q22 16q22 KIAA1464 2004-08-19 2014-11-19 57610 ENSG00000141084 OTTHUMG00000184044 uc002eud.4 AB040897 NM_020850 "CCDS32469|CCDS81999" Q6VN20 14684163 MGI:1921584 RGD:1311587 RANBP10 614031 +HGNC:14428 RANBP17 RAN binding protein 17 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 2001-01-22 2016-10-05 64901 ENSG00000204764 OTTHUMG00000163203 uc003mba.4 AF222747 NM_022897 CCDS34287 Q9H2T7 11024021 MGI:1929706 RGD:1562576 RANBP17 606141 +HGNC:19734 RANBP20P RAN binding protein 20 pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 2003-01-13 2014-11-19 326627 ENSG00000259144 OTTHUMG00000171013 NG_002609 PGOHUM00000262206 +HGNC:9854 RANGAP1 Ran GTPase activating protein 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "Fug1|KIAA1835" SD segregation distorter homolog (Drosophila) 1998-02-26 2016-10-05 5905 ENSG00000100401 OTTHUMG00000150940 uc003azu.5 X82260 NM_002883 CCDS14012 P46060 7878053 MGI:103071 RGD:1310380 RANGAP1 602362 +HGNC:17679 RANGRF RAN guanine nucleotide release factor protein-coding gene gene with protein product Approved 17p13 17p13 "MOG1|HSPC165|HSPC236|RANGNRF" MOG1 homolog (S. cerevisiae) 2007-06-21 2014-11-19 29098 ENSG00000108961 OTTHUMG00000178473 uc002gkv.4 AF151070 NM_016492 "CCDS11137|CCDS54086|CCDS54087|CCDS82066" Q9HD47 11290418 MGI:1889073 RGD:1563195 RANGRF 607954 +HGNC:21631 RANP1 RAN, member RAS oncogene family pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 Em:AB014080.2 2003-07-02 2016-10-05 221547 ENSG00000236603 OTTHUMG00000031142 AB088093 NG_002749 +HGNC:39857 RANP2 RAN, member RAS oncogene family pseudogene 2 pseudogene pseudogene Approved 7q35 07q35 2011-04-05 2014-11-18 100874191 ENSG00000232391 OTTHUMG00000152745 NG_032363 PGOHUM00000233636 +HGNC:39858 RANP3 RAN, member RAS oncogene family pseudogene 3 pseudogene pseudogene Approved 11q13.4 11q13.4 2011-04-05 2014-11-19 100874227 ENSG00000254500 OTTHUMG00000165622 NG_032364 PGOHUM00000242805 +HGNC:39859 RANP4 RAN, member RAS oncogene family pseudogene 4 pseudogene pseudogene Approved Xq26.3 Xq26.3 2011-04-05 2014-11-19 100130621 ENSG00000225125 OTTHUMG00000022514 NG_022642 +HGNC:39860 RANP5 RAN, member RAS oncogene family pseudogene 5 pseudogene pseudogene Approved 1p13.3 01p13.3 2011-04-05 2014-11-19 100129428 ENSG00000228054 OTTHUMG00000042362 NG_022798 +HGNC:39861 RANP6 RAN, member RAS oncogene family pseudogene 6 pseudogene pseudogene Approved 4q34.1 04q34.1 2011-04-05 2014-11-18 100128266 ENSG00000213370 OTTHUMG00000153240 NG_022039 +HGNC:39862 RANP7 RAN, member RAS oncogene family pseudogene 7 pseudogene pseudogene Approved 3p24.3 03p24.3 2011-04-05 2014-11-19 100874192 ENSG00000226183 OTTHUMG00000155606 NG_032365 PGOHUM00000237958 +HGNC:39863 RANP8 RAN, member RAS oncogene family pseudogene 8 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-04-05 2011-04-05 100420519 ENSG00000233524 OTTHUMG00000016520 NG_024835 +HGNC:39864 RANP9 RAN, member RAS oncogene family pseudogene 9 pseudogene pseudogene Approved 8p12 08p12 2011-04-05 2014-11-19 100874193 ENSG00000253393 OTTHUMG00000163933 NG_032366 PGOHUM00000249614 +HGNC:9855 RAP1A RAP1A, member of RAS oncogene family protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "KREV-1|SMGP21" RAS type GTPase family 389 1989-06-30 2016-10-05 5906 ENSG00000116473 OTTHUMG00000011959 uc001ebi.4 BC014086 NM_002884 CCDS840 P62834 3143720 MGI:97852 RGD:1359694 RAP1A 179520 448950 +HGNC:9856 RAP1AP RAP1A, member of RAS oncogene family pseudogene pseudogene pseudogene Approved 14q24.3 14q24.3 "KREV1P|SMGP21A" 1993-07-27 2014-11-19 5907 ENSG00000258769 OTTHUMG00000171213 NG_004799 8449039 +HGNC:9857 RAP1B RAP1B, member of RAS oncogene family protein-coding gene gene with protein product Approved 12q15 12q15 "K-REV|RAL1B|DKFZp586H0723" RAS type GTPase family 389 1989-06-30 2016-10-05 5908 ENSG00000127314 OTTHUMG00000133660 uc001suc.5 NM_001010942 "CCDS8984|CCDS58252|CCDS58253|CCDS58254" P61224 "3137530|12089143" MGI:894315 RGD:620577 RAP1B 179530 455925 +HGNC:49780 RAP1BP1 RAP1B, member of RAS oncogene family pseudogene 1 pseudogene pseudogene Approved 9p22.1 09p22.1 2014-02-14 2014-02-14 100506390 ENSG00000236857 OTTHUMG00000019603 NG_030297 PGOHUM00000260453 +HGNC:49781 RAP1BP2 RAP1B, member of RAS oncogene family pseudogene 2 pseudogene pseudogene Approved 3q13.11 03q13.11 2014-02-14 2014-02-14 100128179 ENSG00000214405 OTTHUMG00000159183 NG_030384 PGOHUM00000250296 +HGNC:49782 RAP1BP3 RAP1B, member of RAS oncogene family pseudogene 3 pseudogene pseudogene Approved 6q22.1 06q22.1 2014-02-14 2014-02-14 100132917 ENSG00000219703 OTTHUMG00000015452 NG_030190 PGOHUM00000243752 +HGNC:9858 RAP1GAP RAP1 GTPase activating protein protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "KIAA0474|RAP1GAP1|RAP1GAPII" RAP1GA1 RAP1, GTPase activating protein 1 1993-04-12 2006-04-12 2006-04-12 2016-10-05 5909 ENSG00000076864 OTTHUMG00000007513 uc001bex.4 BC054490 NM_002885 "CCDS218|CCDS53276|CCDS53277|CCDS81276" P47736 1904317 MGI:109338 RGD:1309908 RAP1GAP 600278 +HGNC:29176 RAP1GAP2 RAP1 GTPase activating protein 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 KIAA1039 GARNL4 "GTPase activating RANGAP domain-like 4|GTPase activating Rap/RanGAP domain-like 4" 2004-02-24 2009-09-14 2009-09-14 2015-09-04 23108 ENSG00000132359 OTTHUMG00000177642 uc010ckd.4 AB028962 XM_011523740 "CCDS45573|CCDS45574|CCDS82035" Q684P5 15632203 MGI:3028623 RGD:1304590 RAP1GAP2 +HGNC:9859 RAP1GDS1 Rap1 GTPase-GDP dissociation stimulator 1 protein-coding gene gene with protein product Approved 4q23 04q23 SmgGDS RAP1, GTP-GDP dissociation stimulator 1 Armadillo repeat containing 409 1994-03-23 2016-02-29 2016-02-29 5910 ENSG00000138698 OTTHUMG00000160987 uc003htx.5 NM_001100426 "CCDS43253|CCDS43254|CCDS47105|CCDS47106|CCDS47107|CCDS47108" P52306 "8262526|17951244" MGI:2385189 RGD:1308558 RAP1GDS1 179502 +HGNC:9861 RAP2A RAP2A, member of RAS oncogene family protein-coding gene gene with protein product Approved 13q32.1 13q32.1 K-REV RAP2 RAS type GTPase family 389 1989-06-30 2016-10-05 5911 ENSG00000125249 OTTHUMG00000017240 uc001vnd.4 AF205602 NM_021033 CCDS9485 P10114 MGI:97855 RGD:620590 RAP2A 179540 +HGNC:9862 RAP2B RAP2B, member of RAS oncogene family protein-coding gene gene with protein product Approved 3q25.2 03q25.2 "Ras-related protein RAP-2B|small GTP binding protein|Ras family small GTP binding protein RAP2B" RAS type GTPase family 389 1991-06-06 2014-05-09 5912 ENSG00000181467 OTTHUMG00000159655 uc003ezr.5 NM_002886 CCDS3170 P61225 2118648 MGI:1921262 RGD:620591 RAP2B 179541 +HGNC:21165 RAP2C RAP2C, member of RAS oncogene family protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 DKFZp313B211 RAS type GTPase family 389 2003-05-22 2016-10-05 57826 ENSG00000123728 OTTHUMG00000022424 uc004ewp.5 BC051467 NM_021183 "CCDS14632|CCDS76024" Q9Y3L5 MGI:1919315 RGD:1588562 RAP2C +HGNC:40957 RAP2C-AS1 RAP2C antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq26.2 Xq26.2 2013-09-19 2014-11-19 101928578 ENSG00000232160 OTTHUMG00000022425 NR_110410 +HGNC:49146 RAP2CP1 RAP2C pseudogene 1 pseudogene pseudogene Approved 14q32.32 14q32.32 2013-09-19 2013-09-19 106480249 ENSG00000270938 OTTHUMG00000184396 NG_043873 PGOHUM00000248277 +HGNC:4568 RAPGEF1 Rap guanine nucleotide exchange factor 1 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 C3G GRF2 "guanine nucleotide-releasing factor 2 (specific for crk proto-oncogene)|Rap guanine nucleotide exchange factor (GEF) 1" 1994-12-13 2004-03-02 2015-11-09 2016-10-05 2889 ENSG00000107263 OTTHUMG00000020829 uc064wrm.1 BC041710 NM_005312 "CCDS48047|CCDS48048|CCDS78450" Q13905 "7959692|7512734" MGI:104580 RGD:619793 RAPGEF1 600303 +HGNC:16854 RAPGEF2 Rap guanine nucleotide exchange factor 2 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "PDZ-GEF1|RA-GEF|DKFZP586O1422|KIAA0313" Rap GEP PDZGEF1 "PDZ domain containing guanine nucleotide exchange factor (GEF) 1|Rap guanine nucleotide exchange factor (GEF) 2" PDZ domain containing 1220 2003-05-20 2004-03-01 2015-11-09 2015-11-09 9693 ENSG00000109756 OTTHUMG00000161451 uc003iqg.5 AB002311 NM_014247 CCDS43277 Q9Y4G8 "9205841|10934204" MGI:2659071 RGD:1306434 RAPGEF2 609530 +HGNC:16629 RAPGEF3 Rap guanine nucleotide exchange factor 3 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "cAMP-GEFI|EPAC|bcm910" exchange protein directly activated by cAMP 1 "RAP guanine-nucleotide-exchange factor (GEF) 3|Rap guanine nucleotide exchange factor (GEF) 3" 2004-03-01 2015-11-09 2016-10-05 10411 ENSG00000079337 OTTHUMG00000133667 uc058nbe.1 AK092448 NM_006105 "CCDS31784|CCDS41775" O95398 "10777494|9856955" MGI:2441741 RGD:621869 RAPGEF3 606057 objectId:1292 +HGNC:16626 RAPGEF4 Rap guanine nucleotide exchange factor 4 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "cAMP-GEFII|CGEF2" "cAMP-regulated guanine nucleotide exchange factor II| exchange protein directly activated by cAMP 2" "RAP guanine-nucleotide-exchange factor (GEF) 4|Rap guanine nucleotide exchange factor (GEF) 4" 2004-03-01 2015-11-09 2016-10-05 11069 ENSG00000091428 OTTHUMG00000133677 uc002uhv.5 U78516 NM_007023 "CCDS42775|CCDS42776|CCDS63060|CCDS63061|CCDS74604" Q8WZA2 "10777494|9856955" MGI:1917723 RGD:621886 RAPGEF4 606058 objectId:1293 +HGNC:28081 RAPGEF4-AS1 RAPGEF4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q31.1 02q31.1 RAPGEF4 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 91149 ENSG00000228016 OTTHUMG00000154091 uc002uht.4 AL157450 NR_026995 +HGNC:16862 RAPGEF5 Rap guanine nucleotide exchange factor 5 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "KIAA0277|GFR|MR-GEF" M-Ras-regulated GEF Rap guanine nucleotide exchange factor (GEF) 5 2004-03-01 2015-11-09 2015-11-09 9771 ENSG00000136237 OTTHUMG00000152525 uc003svg.4 D87467 NM_012294 CCDS55093 Q92565 "9039502|10486569" MGI:2444365 RGD:1561668 RAPGEF5 609527 +HGNC:20655 RAPGEF6 Rap guanine nucleotide exchange factor 6 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "RA-GEF-2|PDZ-GEF2" PDZGEF2 "PDZ domain containing guanine nucleotide exchange factor (GEF) 2|Rap guanine nucleotide exchange factor (GEF) 6" PDZ domain containing 1220 2003-09-03 2004-03-02 2015-11-09 2015-11-09 51735 ENSG00000158987 OTTHUMG00000162683 uc003kvn.2 AF117947 NM_016340 "CCDS34225|CCDS54897|CCDS54898|CCDS54899|CCDS54900|CCDS54901" Q8TEU7 "11524421|12095257" MGI:2384761 RGD:1307645 RAPGEF6 610499 +HGNC:17428 RAPGEFL1 Rap guanine nucleotide exchange factor like 1 protein-coding gene gene with protein product Approved 17q21.1 17q21.1 Link-GEFII Link guanine nucleotide exchange factor II "RAP guanine-nucleotide-exchange factor (GEF)-like 1|Rap guanine nucleotide exchange factor (GEF)-like 1" 2004-03-01 2015-11-09 2016-10-05 51195 ENSG00000108352 OTTHUMG00000133325 uc032fib.2 AF117946 NM_016339 "CCDS11363|CCDS77022|CCDS77023" Q9UHV5 MGI:3611446 RGD:1563269 RAPGEFL1 +HGNC:14436 RAPH1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding gene gene with protein product Approved 2q33.2 02q33.2 KIAA1681 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 18 "ALS2CR9|ALS2CR18" amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 9 Pleckstrin homology domain containing 682 2001-01-26 2003-11-26 2003-11-25 2016-10-05 65059 ENSG00000173166 OTTHUMG00000132876 uc002vad.5 AJ584699 NM_025252 "CCDS2359|CCDS2360" Q70E73 MGI:1924550 RGD:1308387 RAPH1 609035 +HGNC:9863 RAPSN receptor associated protein of the synapse protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "RNF205|CMS1D|CMS1E" rapsyn receptor-associated protein of the synapse, 43kD Ring finger proteins 58 1996-03-12 2015-11-23 2015-11-23 5913 ENSG00000165917 OTTHUMG00000166891 uc001nfi.2 XM_005253042 "CCDS7936|CCDS7937" Q13702 8812503 MGI:99422 RGD:1311592 RAPSN 601592 118222 +HGNC:9864 RARA retinoic acid receptor alpha protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "RAR|NR1B1" retinoic acid receptor, alpha Nuclear hormone receptors 71 1988-06-09 2016-01-27 2016-10-12 5914 ENSG00000131759 OTTHUMG00000133328 uc002huk.3 X06538 XM_017024920 "CCDS11366|CCDS42317|CCDS45671" P10276 "2825036|8244378" MGI:97856 RGD:3534 LRG_1070|http://www.lrg-sequence.org/LRG/LRG_1070 RARA 180240 118227 objectId:590 +HGNC:49577 RARA-AS1 RARA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.2 17q21.2 2014-01-17 2014-01-20 101929693 ENSG00000265666 OTTHUMG00000179631 BC038432 NR_110861 +HGNC:9865 RARB retinoic acid receptor beta protein-coding gene gene with protein product Approved 3p24.2 03p24.2 "HAP|NR1B2|RRB2" retinoic acid receptor, beta Nuclear hormone receptors 71 1989-05-16 2016-01-27 2016-10-05 5915 ENSG00000077092 OTTHUMG00000130480 uc003cdh.4 Y00291 "NM_000965|NM_016152" "CCDS2642|CCDS46775" P10826 MGI:97857 RGD:3535 RARB 180220 368114 objectId:591 +HGNC:9866 RARG retinoic acid receptor gamma protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "RARC|NR1B3" retinoic acid receptor, gamma Nuclear hormone receptors 71 1991-02-05 2016-01-27 2016-10-05 5916 ENSG00000172819 OTTHUMG00000048077 uc001scf.4 M57707 NM_000966 "CCDS8850|CCDS41790|CCDS58236|CCDS58237" P13631 1849262 MGI:97858 RGD:1583230 RARG 180190 objectId:592 +HGNC:9867 RARRES1 retinoic acid receptor responder 1 protein-coding gene gene with protein product Approved 3q25.32 03q25.32 "TIG1|LXNL" latexin-like retinoic acid receptor responder (tazarotene induced) 1 1998-02-03 2016-03-15 2016-03-15 5918 ENSG00000118849 OTTHUMG00000158834 uc003fci.4 U27185 XM_005247686 "CCDS3184|CCDS54665" P49788 "8601727|9270552" MGI:1924461 RGD:1309509 RARRES1 605090 +HGNC:9868 RARRES2 retinoic acid receptor responder 2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "TIG2|HP10433" chemerin retinoic acid receptor responder (tazarotene induced) 2 Endogenous ligands 542 1998-02-03 2016-03-15 2016-03-15 5919 ENSG00000106538 OTTHUMG00000158325 uc003wha.4 U77594 XM_017012491 CCDS5902 Q99969 "9270552|17767914" MGI:1918910 RGD:1309874 RARRES2 601973 +HGNC:48700 RARRES2P1 retinoic acid receptor responder 2 pseudogene 1 pseudogene pseudogene Approved 3p12.3 03p12.3 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 1 2013-06-06 2016-03-15 2016-03-15 643255 ENSG00000241622 OTTHUMG00000158964 NG_029071 PGOHUM00000299480 +HGNC:48701 RARRES2P2 retinoic acid receptor responder 2 pseudogene 2 pseudogene pseudogene Approved 10q26.3 10q26.3 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 2 2013-06-06 2016-03-15 2016-03-15 644425 ENSG00000213543 OTTHUMG00000019329 NG_005568 PGOHUM00000290026 +HGNC:48702 RARRES2P3 retinoic acid receptor responder 2 pseudogene 3 pseudogene pseudogene Approved Xp22.12 Xp22.12 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 3 2013-06-06 2016-03-15 2016-03-15 106481659 ENSG00000231913 OTTHUMG00000021232 NG_044906 PGOHUM00000304528 +HGNC:48703 RARRES2P4 retinoic acid receptor responder 2 pseudogene 4 pseudogene pseudogene Approved 4q35.2 04q35.2 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 4 2013-06-06 2016-03-15 2016-03-15 644881 ENSG00000250053 OTTHUMG00000160173 NG_030220 PGOHUM00000300100 +HGNC:48704 RARRES2P5 retinoic acid receptor responder 2 pseudogene 5 pseudogene pseudogene Approved 16p11.2 16p11.2 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 5 2013-06-06 2016-03-15 2016-03-15 106480231 ENSG00000260967 OTTHUMG00000176242 NG_043740 PGOHUM00000293570 +HGNC:48705 RARRES2P6 retinoic acid receptor responder 2 pseudogene 6 pseudogene pseudogene Approved 16p11.2 16p11.2 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 6 2013-06-06 2016-03-15 2016-03-15 105377820 ENSG00000261010 OTTHUMG00000176244 NG_046669 PGOHUM00000293573 +HGNC:48709 RARRES2P7 retinoic acid receptor responder 2 pseudogene 7 pseudogene pseudogene Approved 16p11.1 16p11.1 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 7 2013-06-06 2016-03-15 2016-03-15 106481660 ENSG00000260812 OTTHUMG00000176000 NG_044914 PGOHUM00000293579 +HGNC:48707 RARRES2P8 retinoic acid receptor responder 2 pseudogene 8 pseudogene pseudogene Approved 16p11.1 16p11.1 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 8 2013-06-06 2016-03-15 2016-03-15 642652 ENSG00000259996 OTTHUMG00000176013 NG_030246 PGOHUM00000293587 +HGNC:48708 RARRES2P9 retinoic acid receptor responder 2 pseudogene 9 pseudogene pseudogene Approved 16p11.1 16p11.1 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 9 2013-06-06 2016-03-15 2016-03-15 106660620 ENSG00000261486 OTTHUMG00000176247 NG_044942 PGOHUM00000293575 +HGNC:51742 RARRES2P10 retinoic acid receptor responder 2 pseudogene 10 pseudogene pseudogene Approved 16p11.1 16p11.1 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 10 2015-05-18 2016-03-15 2016-03-15 106481972 ENSG00000260153 OTTHUMG00000176005 NG_043349 PGOHUM00000293583 +HGNC:51743 RARRES2P11 retinoic acid receptor responder 2 pseudogene 11 pseudogene pseudogene Approved 20q11.1 20q11.1 retinoic acid receptor responder (tazarotene induced) 2 pseudogene 11 2015-05-18 2016-03-15 2016-03-15 107075248 ENSG00000283123 OTTHUMG00000191525 NG_046383 PGOHUM00000296944 +HGNC:9869 RARRES3 retinoic acid receptor responder 3 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "TIG3|HRASLS4" retinoic acid receptor responder (tazarotene induced) 3 HRAS like suppressor family 1227 1998-02-03 2016-03-15 2016-10-05 5920 ENSG00000133321 OTTHUMG00000167850 uc001nxf.5 NM_004585 CCDS41662 Q9UL19 9270552 RARRES3 605092 +HGNC:9870 RARS arginyl-tRNA synthetase protein-coding gene gene with protein product Approved 5q34 05q34 DALRD1 arginine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class I 131 1996-10-26 2016-10-05 5917 ENSG00000113643 OTTHUMG00000130411 uc003lzx.4 BC000528 NM_002887 CCDS4367 P54136 7590355 MGI:1914297 RGD:1309215 RARS 107820 443021 6.1.1.19 +HGNC:21406 RARS2 arginyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 6q15 06q15 "MGC14993|MGC23778|PRO1992|dJ382I10.6|DALRD2" arginine tRNA ligase 2, mitochondrial (putative) RARSL arginyl-tRNA synthetase-like Aminoacyl tRNA synthetases, Class I 131 2003-06-13 2007-02-23 2007-09-27 2016-10-05 57038 ENSG00000146282 OTTHUMG00000015178 uc003pme.4 AK093934 NM_020320 CCDS5011 Q5T160 17847012 MGI:1923596 RGD:1305419 RARS2 611524 159426 6.1.1.19 +HGNC:49893 RARSP1 arginyl-tRNA synthetase pseudogene 1 pseudogene pseudogene Approved 12p11.23 12p11.23 2014-03-18 2014-03-18 100419829 ENSG00000257037 OTTHUMG00000169206 NG_024072 PGOHUM00000239712 +HGNC:9871 RASA1 RAS p21 protein activator 1 protein-coding gene gene with protein product Approved 5q14.3 05q14.3 "GAP|CM-AVM|p120GAP|p120RASGAP|p120" "capillary malformation-arteriovenous malformation|p120 RAS GTPase activating protein" RASA RAS p21 protein activator (GTPase activating protein) 1 "Pleckstrin homology domain containing|SH2 domain containing|C2 and RasGAP domain containing" "682|741|830" 1989-06-30 2016-01-28 2016-10-05 5921 ENSG00000145715 OTTHUMG00000162605 uc003kiw.4 NM_002890 "CCDS34200|CCDS47243" P20936 15917201 MGI:97860 RGD:3537 SH2base: Database for pathogenic SH2 domain mutations|http://structure.bmc.lu.se/idbase/SH2base/ RASA1 139150 118231 +HGNC:9872 RASA2 RAS p21 protein activator 2 protein-coding gene gene with protein product Approved 3q23 03q23 GAP1M "Pleckstrin homology domain containing|C2 and RasGAP domain containing" "682|830" 1996-11-15 2016-10-05 5922 ENSG00000155903 OTTHUMG00000160221 uc003etz.2 AF115573 NM_006506 CCDS3117 Q15283 8699317 MGI:2149960 RGD:3538 RASA2 601589 411370 +HGNC:41376 RASA2-IT1 RASA2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3q23 03q23 RASA2 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874298 ENSG00000250170 OTTHUMG00000160224 uc062omd.1 +HGNC:20331 RASA3 RAS p21 protein activator 3 protein-coding gene gene with protein product Approved 13q34 13q34 "GAP1IP4BP|GAPIII" "Pleckstrin homology domain containing|C2 and RasGAP domain containing" "682|830" 2003-01-29 2014-11-19 22821 ENSG00000185989 OTTHUMG00000017399 uc001vui.4 NM_007368 CCDS32016 Q14644 "7637787|9382842" MGI:1197013 RGD:69365 RASA3 605182 +HGNC:39938 RASA3-IT1 RASA3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q34 13q34 RASA3 intronic transcript 1 (non-protein coding) 2011-04-13 2015-02-25 2015-02-25 100874321 ENSG00000232487 OTTHUMG00000017400 uc058yoy.1 +HGNC:23181 RASA4 RAS p21 protein activator 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "KIAA0538|CAPRI|GAPL" C2 and RasGAP domain containing 830 2003-12-22 2015-01-28 10156 ENSG00000105808 OTTHUMG00000150383 uc003vae.4 AB011110 NM_006989 "CCDS5725|CCDS47674" O43374 11448776 MGI:1858600 RASA4 607943 +HGNC:35202 RASA4B RAS p21 protein activator 4B protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "Pleckstrin homology domain containing|C2 and RasGAP domain containing" "682|830" 2008-10-24 2015-09-07 100271927 ENSG00000170667 OTTHUMG00000022944 uc003uzu.2 XM_003118600 CCDS59506 C9J798 MGI:1858600 RGD:1565457 RASA4B +HGNC:44185 RASA4CP RAS p21 protein activator 4C, pseudogene pseudogene pseudogene Approved 7p13 07p13 2012-06-30 2012-07-04 401331 ENSG00000228903 OTTHUMG00000155354 NR_024116 +HGNC:44226 RASA4DP RAS p21 protein activator 4CD, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 2012-07-20 2012-07-20 100133005 ENSG00000233297 OTTHUMG00000157719 NG_011686 +HGNC:9873 RASAL1 RAS protein activator like 1 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 RASAL RAS protein activator like 1 (GAP1 like) "Pleckstrin homology domain containing|C2 and RasGAP domain containing" "682|830" 1998-11-04 2016-03-11 2016-10-05 8437 ENSG00000111344 OTTHUMG00000169705 uc001tum.3 AF086713 NM_004658 "CCDS9165|CCDS55888|CCDS55889|CCDS73529" O95294 9751798 MGI:1330842 RGD:1311820 RASAL1 604118 +HGNC:9874 RASAL2 RAS protein activator like 2 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 nGAP "Ras GTPase activating protein-like|Ras protein activator like 1" "Pleckstrin homology domain containing|C2 and RasGAP domain containing" "682|830" 2000-03-06 2016-10-05 9462 ENSG00000075391 OTTHUMG00000035022 uc001glq.4 AF047711 NM_170692 "CCDS1321|CCDS1322" Q9UJF2 9877179 MGI:2443881 RGD:1307566 RASAL2 606136 +HGNC:44170 RASAL2-AS1 RASAL2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q25.2 01q25.2 RASAL2 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100302401 ENSG00000224687 OTTHUMG00000040865 uc057noc.1 BC027927 NR_027982 +HGNC:26129 RASAL3 RAS protein activator like 3 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 FLJ21438 C2 and RasGAP domain containing 830 2008-12-18 2008-12-18 64926 ENSG00000105122 OTTHUMG00000182450 uc002nbe.3 NM_022904 CCDS46006 Q86YV0 12477932 MGI:2444128 RGD:1309019 RASAL3 616561 +HGNC:15828 RASD1 ras related dexamethasone induced 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "DEXRAS1|AGS1" "ras-related protein|dexamethasone-induced ras-related protein 1|activator of G protein signaling" RAS, dexamethasone-induced 1 2001-06-15 2016-04-01 2016-04-01 51655 ENSG00000108551 OTTHUMG00000059292 uc002gri.4 AF069506 NM_016084 "CCDS11185|CCDS58519" Q9Y272 10947988 MGI:1270848 RGD:619727 RASD1 605550 +HGNC:18229 RASD2 RASD family member 2 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "TEM2|Rhes|MGC:4834" "tumor endothelial marker 2|Ras homolog enriched in striatum" RASD family, member 2 RAS type GTPase family 389 2002-02-21 2015-11-18 2016-10-05 23551 ENSG00000100302 OTTHUMG00000150607 uc003anx.4 AF279143 NM_014310 CCDS13916 Q96D21 "10947988|10467249|14724584" MGI:1922391 RGD:628594 RASD2 612842 +HGNC:26464 RASEF RAS and EF-hand domain containing protein-coding gene gene with protein product Approved 9q21.32 09q21.32 FLJ31614 RAB45 RAB45, member RAS oncogene family "RAB, member RAS oncogene GTPases|EF-hand domain containing" "388|863" 2004-04-29 2004-06-16 2004-06-11 2016-10-05 158158 ENSG00000165105 OTTHUMG00000020100 uc004amo.2 AK056176 NM_152573 CCDS6662 Q8IZ41 17448446 MGI:2448565 RGD:1306418 RASEF 611344 +HGNC:24246 RASGEF1A RasGEF domain family member 1A protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "CG4853|FLJ37817" 2004-02-04 2015-11-09 2015-11-09 221002 ENSG00000198915 OTTHUMG00000018025 uc001jap.3 AK095136 NM_145313 "CCDS7202|CCDS60517" Q8N9B8 19645719 MGI:1917977 RGD:1305836 RASGEF1A 614531 +HGNC:24881 RASGEF1B RasGEF domain family member 1B protein-coding gene gene with protein product Approved 4q21.21 04q21.21 "GPIG4|FLJ31695" 2004-02-04 2015-11-09 2015-11-09 153020 ENSG00000138670 OTTHUMG00000160890 uc003hmi.2 AK056257 NM_152545 "CCDS34022|CCDS75151|CCDS75152" Q0VAM2 19645719 MGI:2443755 RGD:1562220 RASGEF1B 614532 +HGNC:27400 RASGEF1C RasGEF domain family member 1C protein-coding gene gene with protein product Approved 5q35.3 05q35.3 FLJ35841 2004-02-04 2015-11-09 2015-11-09 255426 ENSG00000146090 OTTHUMG00000130914 uc003mlr.4 AK093160 NM_175062 CCDS4452 Q8N431 23469100 MGI:1921813 RGD:1311549 RASGEF1C +HGNC:9875 RASGRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "CDC25L|CDC25|GRF55|H-GRF55|GNRP|PP13187" GRF1 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 1994-02-11 2015-11-19 2016-10-05 5923 ENSG00000058335 OTTHUMG00000144172 uc002bep.4 M91815 NM_002891 "CCDS10309|CCDS42065|CCDS45320" Q13972 "7684828|1379731" MGI:99694 RGD:620395 RASGRF1 606600 +HGNC:9876 RASGRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "GRF2|Ras-GRF2" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 1996-12-20 2015-11-19 2016-10-05 5924 ENSG00000113319 OTTHUMG00000119015 uc003kha.3 AF023130 NM_006909 CCDS4052 O14827 MGI:109137 RGD:69413 RASGRF2 606614 +HGNC:40499 RASGRF2-AS1 RASGRF2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q14.1 05q14.1 2014-05-20 2014-05-20 2014-11-19 102524628 ENSG00000251450 OTTHUMG00000162539 BM682385 NR_105015 +HGNC:9878 RASGRP1 RAS guanyl releasing protein 1 protein-coding gene gene with protein product Approved 15q14 15q14 "CalDAG-GEFII|RASGRP" calcium- and diacylglycerol-regulated guanine nucleotide exchange factor II RAS guanyl releasing protein 1 (calcium and DAG-regulated) EF-hand domain containing 863 1999-06-02 2016-01-18 2016-01-18 10125 ENSG00000172575 OTTHUMG00000172379 uc001zke.5 AF106071 NM_005739 "CCDS45221|CCDS45222|CCDS76733" O95267 "10087292|9789079" MGI:1314635 RGD:3539 RASGRP1 603962 +HGNC:9879 RASGRP2 RAS guanyl releasing protein 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 CALDAG-GEFI calcium- and diacylglycerol-regulated guanine nucleotide exchange factor I RAS guanyl releasing protein 2 (calcium and DAG-regulated) EF-hand domain containing 863 1999-07-21 2016-01-18 2016-10-12 10235 ENSG00000068831 OTTHUMG00000045420 uc009ypw.3 U78170 NM_153819 CCDS31598 Q7LDG7 9789079 MGI:1333849 RGD:1311630 "RASGRP2base: Mutation registry for Leukocyte adhesion deficiency III|http://structure.bmc.lu.se/idbase/RASGRP2base/|LRG_100|http://www.lrg-sequence.org/LRG/LRG_100" RASGRP2 605577 431588 +HGNC:14545 RASGRP3 RAS guanyl releasing protein 3 protein-coding gene gene with protein product Approved 2p22.3 02p22.3 "KIAA0846|GRP3|CalDAG-GEFIII" calcium- and diacylglycerol-regulated guanine nucleotide exchange factor III RAS guanyl releasing protein 3 (calcium and DAG-regulated) EF-hand domain containing 863 2003-06-05 2016-01-18 2016-10-05 25780 ENSG00000152689 OTTHUMG00000152124 uc002rox.4 AB020653 NM_015376 "CCDS46256|CCDS54346" Q8IV61 "10048485|10934204" MGI:3028579 RGD:1304612 RASGRP3 609531 +HGNC:18958 RASGRP4 RAS guanyl releasing protein 4 protein-coding gene gene with protein product Approved 19q13.1 19q13.1 EF-hand domain containing 863 2002-07-17 2015-08-25 115727 ENSG00000171777 OTTHUMG00000182327 uc010ega.4 AY048119 NM_170604 "CCDS46068|CCDS54262|CCDS54263|CCDS54264|CCDS59382|CCDS59383|CCDS59384" Q8TDF6 11956218 MGI:2386851 RGD:620476 RASGRP4 607320 +HGNC:24716 RASIP1 Ras interacting protein 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "FLJ20401|RAIN" 2004-04-05 2014-11-19 54922 ENSG00000105538 OTTHUMG00000183323 uc002pki.4 BC028614 NM_017805 CCDS12731 Q5U651 15031288 MGI:1917153 RGD:1305291 RASIP1 609623 +HGNC:16954 RASL10A RAS like family 10 member A protein-coding gene gene with protein product Approved 22q12.2 22q12.2 RRP22 "RAS-like, family 10, member A|RAS-like family 10 member A" RAS type GTPase family 389 2007-01-15 2016-02-01 2016-02-01 10633 ENSG00000100276 OTTHUMG00000151106 uc003aff.4 Y07847 NM_006477 CCDS13854 Q92737 "8975699|15731001" MGI:1922918 RGD:1306100 RASL10A 602220 +HGNC:30295 RASL10B RAS like family 10 member B protein-coding gene gene with protein product Approved 17q12 17q12 "VTS58635|RRP17" "RAS-like, family 10, member B|RAS-like family 10 member B" RAS type GTPase family 389 2004-02-05 2016-02-01 2016-10-05 91608 ENSG00000270885 OTTHUMG00000188385 uc002hju.4 BC041133 NM_033315 CCDS11297 Q96S79 12477932 MGI:2685575 RGD:1310873 RASL10B 612128 +HGNC:23802 RASL11A RAS like family 11 member A protein-coding gene gene with protein product Approved 13q12.2 13q12.2 "RAS-like, family 11, member A|RAS-like family 11 member A" RAS type GTPase family 389 2003-12-11 2016-02-01 2016-02-01 387496 ENSG00000122035 OTTHUMG00000016627 uc001urd.1 AY439004 NM_206827 CCDS9321 Q6T310 15033445 MGI:1916145 RGD:1303231 RASL11A 612403 +HGNC:23804 RASL11B RAS like family 11 member B protein-coding gene gene with protein product Approved 4q12 04q12 "RAS-like, family 11, member B|RAS-like family 11 member B" RAS type GTPase family 389 2003-12-11 2016-02-01 2016-02-01 65997 ENSG00000128045 OTTHUMG00000102097 uc003gzt.4 BK001672 NM_023940 CCDS3490 Q9BPW5 MGI:1916189 RGD:1303099 RASL11B 612404 +HGNC:30289 RASL12 RAS like family 12 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 RIS Ras family member Ris "RAS-like, family 12|RAS-like family 12" RAS type GTPase family 389 2004-02-03 2016-02-01 2016-10-05 51285 ENSG00000103710 OTTHUMG00000133115 uc002aoi.2 AF233588 NM_016563 "CCDS10200|CCDS76769" Q9NYN1 12107412 MGI:1918034 RGD:1306268 RASL12 +HGNC:9882 RASSF1 Ras association domain family member 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "NORE2A|REH3P21|RDA32|123F2" Ras association (RalGDS/AF-6) domain family member 1 Ras association domain family 1198 2000-05-30 2016-01-29 2016-10-05 11186 ENSG00000068028 OTTHUMG00000149958 uc003dad.2 AF132675 XM_011533316 "CCDS2820|CCDS2821|CCDS2822|CCDS43096" Q9NS23 MGI:1928386 RGD:1359383 RASSF1 605082 +HGNC:49091 RASSF1-AS1 RASSF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.3 03p21.3 ANRASSF1 Long non-coding RNAs 788 2013-09-01 2014-09-24 102060282 ENSG00000281358 OTTHUMG00000189572 KC330992 NR_109831 23990798 +HGNC:9883 RASSF2 Ras association domain family member 2 protein-coding gene gene with protein product Approved 20p13 20p13 "KIAA0168|CENP-34" centromere protein 34 Ras association (RalGDS/AF-6) domain family member 2 Ras association domain family 1198 2000-08-22 2016-01-29 2016-01-29 9770 ENSG00000101265 OTTHUMG00000031790 uc002wlf.3 D79990 NM_014737 CCDS13083 P50749 "8724849|15806169" MGI:2442060 RGD:1305551 RASSF2 609492 +HGNC:14271 RASSF3 Ras association domain family member 3 protein-coding gene gene with protein product Approved 12q14.2 12q14.2 Ras association (RalGDS/AF-6) domain family member 3 Ras association domain family 1198 2000-12-21 2016-01-29 2016-01-29 283349 ENSG00000153179 OTTHUMG00000168812 uc001ssd.3 XM_006719345 CCDS8969 Q86WH2 MGI:2179722 RGD:1311450 RASSF3 607019 +HGNC:20793 RASSF4 Ras association domain family member 4 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "AD037|MGC44914" Ras association (RalGDS/AF-6) domain family member 4 Ras association domain family 1198 2003-04-24 2016-01-29 2016-10-05 83937 ENSG00000107551 OTTHUMG00000018060 uc001jbo.4 BC032593 NM_032023 CCDS7208 Q9H2L5 MGI:2386853 RGD:1307785 RASSF4 610559 +HGNC:17609 RASSF5 Ras association domain family member 5 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "Maxp1|NORE1|RAPL" "novel Ras effector 1|regulator for cell adhesion and polarization enriched in lymphoid tissues" Ras association (RalGDS/AF-6) domain family member 5 Ras association domain family 1198 2003-04-02 2016-01-29 2016-10-05 83593 ENSG00000266094 OTTHUMG00000184616 uc031vlp.2 BC004270 NM_031437 "CCDS1463|CCDS1464|CCDS30998" Q8WWW0 "11978988|11965544|23972470" MGI:1926375 RGD:621694 RASSF5 607020 +HGNC:20796 RASSF6 Ras association domain family member 6 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 Ras association (RalGDS/AF-6) domain family member 6 Ras association domain family 1198 2003-04-24 2016-01-29 2016-10-05 166824 ENSG00000169435 OTTHUMG00000130007 uc003hhd.3 AY217664 NM_177532 "CCDS3558|CCDS3559|CCDS58904|CCDS58905" Q6ZTQ3 MGI:1920496 RGD:1566082 RASSF6 612620 +HGNC:1166 RASSF7 Ras association domain family member 7 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "HRC1|HRAS1" C11orf13 "chromosome 11 open reading frame 13|Ras association (RalGDS/AF-6) domain family (N-terminal) member 7" Ras association domain family 1198 1998-12-18 2005-09-14 2016-01-29 2016-01-29 8045 ENSG00000099849 OTTHUMG00000132004 uc001lqc.4 M91083 NM_003475 "CCDS7702|CCDS44505|CCDS44506" Q02833 1339391 MGI:1914235 RGD:1306244 RASSF7 143023 +HGNC:13232 RASSF8 Ras association domain family member 8 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 HoJ-1 C12orf2 "chromosome 12 open reading frame 2|Ras association (RalGDS/AF-6) domain family (N-terminal) member 8" Ras association domain family 1198 2001-04-05 2005-09-14 2016-01-29 2016-10-05 11228 ENSG00000123094 OTTHUMG00000169087 uc001rgx.4 U82396 NM_007211 "CCDS8705|CCDS53765" Q8NHQ8 MGI:1918573 RGD:1308820 RASSF8 608231 +HGNC:48637 RASSF8-AS1 RASSF8 atnisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p12.1 12p12.1 2013-05-30 2013-05-30 100506451 ENSG00000246695 OTTHUMG00000169126 NR_038227 +HGNC:15739 RASSF9 Ras association domain family member 9 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 P-CIP1 PAMCI "peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor|Ras association (RalGDS/AF-6) domain family (N-terminal) member 9" Ras association domain family 1198 2001-05-23 2008-02-22 2016-01-29 2016-01-29 9182 ENSG00000198774 OTTHUMG00000169831 uc001taf.2 XM_011538988 CCDS44950 O75901 "9837933|18272789" MGI:2384307 RGD:621329 RASSF9 610383 +HGNC:33984 RASSF10 Ras association domain family member 10 protein-coding gene gene with protein product Approved 11p15.2 11p15.2 peptidylglycine alpha-amidating monooxygenase COOH-terminal interactor-like Ras association (RalGDS/AF-6) domain family (N-terminal) member 10 Ras association domain family 1198 2008-02-22 2016-01-29 2016-01-29 644943 ENSG00000189431 OTTHUMG00000166184 uc021qdz.2 NM_001080521 A6NK89 18272789 MGI:1925998 RGD:1309847 614713 +HGNC:30296 RAVER1 ribonucleoprotein, PTB binding 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 KIAA1978 ribonucleoprotein, PTB-binding 1 RNA binding motif containing 725 2006-03-22 2016-04-06 2016-04-06 125950 ENSG00000161847 OTTHUMG00000180409 uc002moa.4 NM_133452 CCDS45960 Q8IY67 "11853319|11724819" MGI:1919016 RGD:1359190 RAVER1 609950 +HGNC:25577 RAVER2 ribonucleoprotein, PTB binding 2 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "KIAA1579|FLJ10770" ribonucleoprotein, PTB-binding 2 RNA binding motif containing 725 2006-03-22 2016-04-06 2016-04-06 55225 ENSG00000162437 OTTHUMG00000009102 uc001dbs.3 AB046799 NM_018211 CCDS41345 Q9HCJ3 16051233 MGI:2443623 RGD:1307610 RAVER2 609953 +HGNC:18662 RAX retina and anterior neural fold homeobox protein-coding gene gene with protein product Approved 18q21.32 18q21.32 RX PRD class homeoboxes and pseudogenes 521 2002-05-22 2016-10-05 30062 ENSG00000134438 OTTHUMG00000132757 uc002lhx.3 AF115392 NM_013435 CCDS11972 Q9Y2V3 "10625658|10766016|14662654" MGI:109632 RGD:620371 RAX 601881 8631 160006 +HGNC:18286 RAX2 retina and anterior neural fold homeobox 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MGC15631|ARMD6|CORD11" RAXL1 retina and anterior neural fold homeobox like 1 PRD class homeoboxes and pseudogenes 521 2006-02-09 2007-08-28 2007-08-28 2014-11-19 84839 ENSG00000173976 OTTHUMG00000171148 uc002lyr.4 AY211277 NM_032753 CCDS12112 Q96IS3 RAX2 610362 8557 138702 +HGNC:9884 RB1 RB transcriptional corepressor 1 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "RB|PPP1R130" "prepro-retinoblastoma-associated protein|protein phosphatase 1, regulatory subunit 130" OSRC "osteosarcoma|retinoblastoma 1" Endogenous ligands 542 1986-01-01 2016-05-24 2016-10-12 5925 ENSG00000139687 OTTHUMG00000016900 uc001vcb.4 M15400 NM_000321 CCDS31973 P06400 "1857421|15057823" MGI:97874 RGD:3540 "RB1-LSDB|http://rb1-lovd.d-lohmann.de/home.php?select_db=RB1|LRG_517|http://www.lrg-sequence.org/LRG/LRG_517" RB1 614041 118239 +HGNC:15574 RB1CC1 RB1 inducible coiled-coil 1 protein-coding gene gene with protein product Approved 8q11 08q11 "KIAA0203|Cc1|DRAGOU14|FIP200|ATG17|PPP1R131" "200 kDa FAK family kinase-interacting protein|phosphatase 1, regulatory subunit 131" "Protein phosphatase 1 regulatory subunits|Autophagy related" "694|1022" 2001-06-01 2015-11-20 2015-11-20 9821 ENSG00000023287 OTTHUMG00000164268 uc003xre.5 AB059622 NM_014781 "CCDS34892|CCDS47856" Q8TDY2 "11850849|7724523|18443221" MGI:1341850 RGD:1309346 RB1CC1 606837 +HGNC:17680 RBAK RB associated KRAB zinc finger protein-coding gene gene with protein product Approved 7p22.1 07p22.1 ZNF769 Zinc fingers C2H2-type 28 2006-08-14 2016-02-12 2016-02-12 57786 ENSG00000146587 OTTHUMG00000121155 uc003sns.1 AF226869 NM_021163 CCDS5337 Q9NYW8 MGI:1927369 RGD:1562875 RBAK 608191 442 +HGNC:42971 RBAK-RBAKDN RBAK-RBAKDN readthrough other readthrough Approved 7p22.1 07p22.1 2013-05-20 2013-05-20 100533952 ENSG00000272968 OTTHUMG00000186010 NM_001204513 CCDS56463 +HGNC:33770 RBAKDN RBAK downstream neighbor (non-protein coding) non-coding RNA RNA, long non-coding Approved 7p22.1 07p22.1 2013-05-20 2013-05-20 389458 ENSG00000273313 OTTHUMG00000186012 BC031661 NR_015343 A6NC62 +HGNC:9887 RBBP4 RB binding protein 4, chromatin remodeling factor protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "RbAp48|NURF55|lin-53" "retinoblastoma-binding protein 4|retinoblastoma binding protein 4" "WD repeat domain containing|EMSY complex|NuRD complex" "362|1243|1305" 1995-05-05 2016-05-25 2016-05-25 5928 ENSG00000162521 OTTHUMG00000007998 uc001bvr.3 BC053904 NM_005610 "CCDS366|CCDS44105|CCDS44106" Q09028 "8350924|14609955|17531812" MGI:1194912 RGD:1593768 RBBP4 602923 +HGNC:42368 RBBP4P1 RB binding protein 4 pseudogene 1 pseudogene pseudogene Approved 5p15.2 05p15.2 retinoblastoma binding protein 4 pseudogene 1 2011-07-05 2016-05-25 2016-05-25 642954 ENSG00000249485 OTTHUMG00000161817 NG_008273 PGOHUM00000235127 +HGNC:42369 RBBP4P2 RB binding protein 4 pseudogene 2 pseudogene pseudogene Approved 3q11.2 03q11.2 retinoblastoma binding protein 4 pseudogene 2 2011-07-05 2016-05-25 2016-10-05 100420527 ENSG00000242457 OTTHUMG00000159011 NG_025601 PGOHUM00000237685 +HGNC:42370 RBBP4P3 RB binding protein 4 pseudogene 3 pseudogene pseudogene Approved 6q11.1 06q11.1 retinoblastoma binding protein 4 pseudogene 3 2011-07-05 2016-05-25 2016-05-25 730180 ENSG00000276290 OTTHUMG00000188337 NG_022302 PGOHUM00000301404 +HGNC:42371 RBBP4P4 RB binding protein 4 pseudogene 4 pseudogene pseudogene Approved 6p11.2 06p11.2 retinoblastoma binding protein 4 pseudogene 4 2011-07-05 2016-05-25 2016-05-25 727842 ENSG00000214561 OTTHUMG00000014931 NG_022304 PGOHUM00000243222 +HGNC:42372 RBBP4P5 RB binding protein 4 pseudogene 5 pseudogene pseudogene Approved 14q11.2 14q11.2 retinoblastoma binding protein 4 pseudogene 5 2011-07-05 2016-05-25 2016-05-25 100288451 ENSG00000256737 OTTHUMG00000168828 NG_022854 PGOHUM00000248048 +HGNC:42373 RBBP4P6 RB binding protein 4 pseudogene 6 pseudogene pseudogene Approved 5q14.3 05q14.3 retinoblastoma binding protein 4 pseudogene 6 2011-07-05 2016-05-25 2016-05-25 100820741 ENSG00000248674 OTTHUMG00000162572 NG_030512 PGOHUM00000235304 +HGNC:9888 RBBP5 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "RBQ3|SWD1" SWD1, Set1c WD40 repeat protein, homolog (S. cerevisiae) "retinoblastoma-binding protein 5|retinoblastoma binding protein 5" WD repeat domain containing 362 1995-05-30 2016-05-25 2016-10-05 5929 ENSG00000117222 OTTHUMG00000037104 uc001hbu.3 BC053856 NM_005057 "CCDS30983|CCDS53463" Q15291 7558034 MGI:1918367 RGD:1305532 RBBP5 600697 +HGNC:9889 RBBP6 RB binding protein 6, ubiquitin ligase protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "P2P-R|PACT|SNAMA" proliferation potential-related protein "retinoblastoma-binding protein 6|retinoblastoma binding protein 6" 1995-08-17 2016-05-25 2016-10-05 5930 ENSG00000122257 OTTHUMG00000096991 uc002dmh.4 NM_006910 "CCDS10621|CCDS10622|CCDS45444" Q7Z6E9 "8595913|16396680" MGI:894835 RGD:1311964 RBBP6 600938 6.3.2.- +HGNC:45108 RBBP6P1 RB binding protein 6 pseudogene 1 pseudogene pseudogene Approved 10q22.3 10q22.3 retinoblastoma binding protein 6 pseudogene 1 2013-02-15 2016-05-25 2016-05-25 100129156 NG_022184 PGOHUM00000238849 +HGNC:9890 RBBP7 RB binding protein 7, chromatin remodeling factor protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 RbAp46 "G1/S transition control protein-binding protein RbAp46|retinoblastoma-binding protein 7|retinoblastoma-binding protein RbAp46|histone acetyltransferase type B subunit 2|retinoblastoma-binding protein p46" "retinoblastoma-binding protein 7|retinoblastoma binding protein 7|RB binding protein 7" "WD repeat domain containing|EMSY complex|NuRD complex" "362|1243|1305" 1998-01-23 2016-05-25 2016-10-05 5931 ENSG00000102054 OTTHUMG00000021198 uc004cxt.4 U35143 NM_002893 "CCDS14179|CCDS56598" Q16576 7503932 MGI:1194910 RGD:620125 RBBP7 300825 +HGNC:9891 RBBP8 RB binding protein 8, endonuclease protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "CtIP|RIM|COM1" CTBP-interacting protein SCKL2 "retinoblastoma-binding protein 8|Seckel syndrome 2|retinoblastoma binding protein 8" BRCA1 C complex 1336 1998-02-12 2016-05-25 2016-05-25 5932 ENSG00000101773 OTTHUMG00000131769 uc002ktw.4 AF043431 NM_203291 "CCDS11874|CCDS11875" Q99708 "9721205|17965729|21998596" MGI:2442995 RGD:1308872 RBBP8 604124 292698 3.1.-.- +HGNC:16144 RBBP8NL RBBP8 N-terminal like protein-coding gene gene with protein product Approved 20q13.33 20q13.33 dJ908M14.3 hypothetical protein LOC140893 C20orf151 chromosome 20 open reading frame 151 2001-07-17 2012-10-30 2012-10-30 2012-10-30 140893 ENSG00000130701 OTTHUMG00000032913 uc002ycw.3 AL121832 NM_080833 CCDS13498 Q8NC74 11780052 MGI:3606212 RGD:1596090 +HGNC:39583 RBBP8P1 RB binding protein 8 pseudogene 1 pseudogene pseudogene Approved Xq24 Xq24 retinoblastoma binding protein 8 pseudogene 1 2011-03-15 2016-05-25 2016-05-25 100420552 ENSG00000230399 OTTHUMG00000022255 NG_026754 PGOHUM00000263337 +HGNC:39584 RBBP8P2 RB binding protein 8 pseudogene 2 pseudogene pseudogene Approved 13q12.13 13q12.13 retinoblastoma binding protein 8 pseudogene 2 2011-03-15 2016-05-25 2016-05-25 100420607 NG_024906 PGOHUM00000248550 +HGNC:9892 RBBP9 RB binding protein 9, serine hydrolase protein-coding gene gene with protein product Approved 20p11.23 20p11.23 Bog "retinoblastoma-binding protein 9|retinoblastoma binding protein 9" 1998-09-22 2016-05-25 2016-10-05 10741 ENSG00000089050 OTTHUMG00000031972 uc002wqy.5 AF039564 NM_006606 CCDS13136 O75884 "9697699|10449909|20080647" MGI:1347074 RGD:3542 RBBP9 602908 objectId:2874 +HGNC:15864 RBCK1 RANBP2-type and C3HC4-type zinc finger containing 1 protein-coding gene gene with protein product Approved 20p13 20p13 "RBCK2|XAP4|RNF54|ZRANB4|UBCE7IP3|HOIL1" heme-oxidized IRP2 ubiquitin ligase 1 C20orf18 "chromosome 20 open reading frame 18|RanBP-type and C3HC4-type zinc finger containing 1" "Ring finger proteins|Zinc fingers RANBP2-type " "58|89" 2001-06-21 2006-06-28 2016-02-12 2016-10-12 10616 ENSG00000125826 OTTHUMG00000031634 uc002wdp.5 U67322 NM_031229 "CCDS12998|CCDS13000|CCDS82587|CCDS82588" Q9BYM8 MGI:1344372 RGD:708404 LRG_728|http://www.lrg-sequence.org/LRG/LRG_728 RBCK1 610924 331658 +HGNC:26120 RBFA ribosome binding factor A (putative) protein-coding gene gene with protein product Approved 18q23 18q23 "FLJ21172|HsT169" C18orf22 chromosome 18 open reading frame 22 2004-05-05 2010-10-21 2010-10-21 2014-11-18 79863 ENSG00000101546 OTTHUMG00000132923 uc002lns.4 BC014195 NM_024805 "CCDS12021|CCDS54194" Q8N0V3 12477932 MGI:1915981 RGD:1311910 RBFA +HGNC:48591 RBFADN RBFA downstream neighbor (non-protein coding) non-coding RNA RNA, long non-coding Approved 18q23 18q23 2013-05-21 2013-10-11 100506070 NR_103445 +HGNC:18222 RBFOX1 RNA binding protein, fox-1 homolog 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "A2BP1|FOX-1|HRNBP1" "ataxin 2-binding protein 1|hexaribonucleotide binding protein 1" RNA binding protein, fox-1 homolog (C. elegans) 1 RNA binding motif containing 725 2010-09-10 2016-04-19 2016-04-19 54715 ENSG00000078328 OTTHUMG00000129551 uc002cyy.3 AF107203 NM_145891 "CCDS10531|CCDS10532|CCDS45405|CCDS55983|CCDS55984|CCDS76818" Q9NWB1 "10814712|16260614" MGI:1926224 RGD:1311210 RBFOX1 605104 +HGNC:9906 RBFOX2 RNA binding protein, fox-1 homolog 2 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "HNRBP2|FOX-2|HRNBP2" hexaribonucleotide binding protein 2 RBM9 "RNA binding motif protein 9|RNA binding protein, fox-1 homolog (C. elegans) 2" RNA binding motif containing 725 1999-10-12 2010-09-10 2016-04-19 2016-10-05 23543 ENSG00000100320 OTTHUMG00000150585 uc003aok.5 AL009266 XM_017028686 "CCDS13921|CCDS43013|CCDS46699|CCDS46700|CCDS46701" O43251 MGI:1933973 RGD:1311838 RBFOX2 612149 +HGNC:27097 RBFOX3 RNA binding protein, fox-1 homolog 3 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FOX-3|NeuN|HRNBP3" "neuronal nuclei|hexaribonucleotide binding protein 3" RNA binding protein, fox-1 homolog (C. elegans) 3 RNA binding motif containing 725 2010-09-10 2016-04-19 2016-04-19 146713 ENSG00000167281 OTTHUMG00000150183 uc010dhs.5 NM_001082575 CCDS45805 A6NFN3 16260614 MGI:106368 RGD:1560070 RBFOX3 616999 +HGNC:30325 RBKS ribokinase protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "DKFZp686G13268|RBSK" 2004-01-12 2016-10-05 64080 ENSG00000171174 OTTHUMG00000097833 uc002rlo.3 BC017425 NM_022128 CCDS1762 Q9H477 8382990 MGI:1918586 RGD:1310064 RBKS 611132 2.7.1.15 +HGNC:9893 RBL1 RB transcriptional corepressor like 1 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "p107|cp107|PRB1" retinoblastoma-like 1 1994-01-07 2016-05-24 2016-05-24 5933 ENSG00000080839 OTTHUMG00000032406 uc002xgi.5 L14812 NM_002895 "CCDS13289|CCDS13290" P28749 1833063 MGI:103300 RGD:1595511 RBL1 116957 +HGNC:9894 RBL2 RB transcriptional corepressor like 2 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 "Rb2|p130" retinoblastoma-like 2 1994-01-17 2016-05-24 2016-05-24 5934 ENSG00000103479 OTTHUMG00000133198 uc002ehi.5 X74594 NM_005611 CCDS10748 Q08999 "8361765|8643454" MGI:105085 RGD:3541 RBL2 180203 +HGNC:9900 RBM3 RNA binding motif (RNP1, RRM) protein 3 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 IS1-RNPL RNA binding motif protein 3 RNA binding motif containing 725 1995-08-29 2004-04-23 2016-10-05 5935 ENSG00000102317 OTTHUMG00000024121 uc004dkf.3 BC006825 NM_006743 CCDS14301 P98179 8634703 MGI:1099460 RGD:620145 RBM3 300027 +HGNC:9901 RBM4 RNA binding motif protein 4 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "LARK|RBM4A|ZCRB3A|ZCCHC21" "Zinc fingers CCHC-type|RNA binding motif containing" "74|725" 1997-12-23 2016-10-05 5936 ENSG00000173933 OTTHUMG00000154171 uc001oiw.3 U89505 NM_002896 "CCDS41676|CCDS55776|CCDS55777" Q9BWF3 "9169144|16260624" MGI:1100865 RGD:1306891 RBM4 602571 +HGNC:28842 RBM4B RNA binding motif protein 4B protein-coding gene gene with protein product Approved 11q13 11q13 "MGC10871|ZCCHC15|RBM4L|ZCRB3B|ZCCHC21B" RBM30 RNA binding motif protein 30 "Zinc fingers CCHC-type|RNA binding motif containing" "74|725" 2004-08-19 2006-01-25 2006-01-25 2014-11-18 83759 ENSG00000173914 OTTHUMG00000167243 uc001ojb.5 AK095158 NM_031492 "CCDS8149|CCDS66144" Q9BQ04 12477932 MGI:1913954 RGD:1359343 RBM4B +HGNC:9902 RBM5 RNA binding motif protein 5 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "LUCA15|H37" "Zinc fingers RANBP2-type |G-patch domain containing|RNA binding motif containing" "89|579|725" 1998-09-30 2016-10-05 10181 ENSG00000003756 OTTHUMG00000156785 uc003cyg.4 U23946 NM_005778 CCDS2810 P52756 "10352938|23935508" MGI:1933204 RGD:1305059 RBM5 606884 +HGNC:48871 RBM5-AS1 RBM5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 LUST LUCA-15-specific transcript 2013-06-15 2014-01-23 100775107 ENSG00000281691 OTTHUMG00000189567 EF470865 NR_045388 "10949932|19559772" +HGNC:9903 RBM6 RNA binding motif protein 6 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "DEF-3|3G2|NY-LU-12|g16|DEF3" "G-patch domain containing|RNA binding motif containing" "579|725" 1998-09-30 2016-10-05 10180 ENSG00000004534 OTTHUMG00000156736 uc003cyc.4 AF069517 NM_005777 "CCDS2809|CCDS54586" P78332 10352938 MGI:1338037 RGD:1560367 RBM6 606886 +HGNC:9904 RBM7 RNA binding motif protein 7 protein-coding gene gene with protein product Approved 11q23.1-q23.2 11q23.1-q23.2 "RNA binding motif containing|Nuclear exosome targeting complex" "725|1316" 1998-10-01 2015-06-04 10179 ENSG00000076053 OTTHUMG00000168270 uc001pov.5 AF156098 NM_016090 "CCDS8370|CCDS66233|CCDS73395" Q9Y580 25852104 MGI:1914260 RGD:1308017 RBM7 612413 +HGNC:9905 RBM8A RNA binding motif protein 8A protein-coding gene gene with protein product Approved 1q21.1 01q21.1 "ZNRP|BOV-1A|BOV-1B|BOV-1C|RBM8B|Y14" RBM8 "RNA binding motif containing|Exon junction complex" "725|1238" 1999-05-05 2016-10-12 9939 ENSG00000265241 OTTHUMG00000013736 uc031uto.3 AF127761 NM_005105 CCDS72872 Q9Y5S9 "11004516|11013075" MGI:1913129 RGD:1310099 LRG_574|http://www.lrg-sequence.org/LRG/LRG_574 RBM8A 605313 296697 +HGNC:13426 RBM8B RNA binding motif protein 8B pseudogene pseudogene pseudogene Approved 14q23.1 14q23.1 2000-10-23 2013-06-10 112846 ENSG00000258427 OTTHUMG00000171184 AF403013 NG_002415 11013075 PGOHUM00000261853 +HGNC:9896 RBM10 RNA binding motif protein 10 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "DXS8237E|KIAA0122|GPATC9|ZRANB5|GPATCH9" "Zinc fingers RANBP2-type |G-patch domain containing|RNA binding motif containing" "89|579|725" 2000-02-21 2015-08-26 8241 ENSG00000182872 OTTHUMG00000021432 uc004dhf.4 U35373 NM_005676 "CCDS14274|CCDS56600|CCDS75969|CCDS78478" P98175 "8590280|8808293" MGI:2384310 RGD:631366 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RBM10 RBM10 300080 233025 +HGNC:9897 RBM11 RNA binding motif protein 11 protein-coding gene gene with protein product Approved 21q11.2 21q11.2 RNA binding motif containing 725 2000-05-23 2016-10-05 54033 ENSG00000185272 OTTHUMG00000074263 uc002yjo.5 AF130358 NM_144770 CCDS46635 P57052 12036298 MGI:2447622 RGD:1305195 RBM11 +HGNC:43743 RBM11P1 RNA binding motif protein 11 pseudogene 1 pseudogene pseudogene Approved 6q23.2 06q23.2 2012-02-20 2014-05-12 100420213 ENSG00000271488 OTTHUMG00000184398 NG_025978 PGOHUM00000243780 +HGNC:9898 RBM12 RNA binding motif protein 12 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "HRIHFB2091|KIAA0765|SWAN" RNA binding motif containing 725 2000-06-28 2016-10-05 10137 ENSG00000244462 OTTHUMG00000032350 uc002xdr.4 AJ289772 NM_006047 CCDS13261 Q9NTZ6 11435693 MGI:1922960 RGD:1594333 RBM12 607179 +HGNC:32310 RBM12B RNA binding motif protein 12B protein-coding gene gene with protein product Approved 8q22.1 08q22.1 RNA binding motif containing 725 2005-09-27 2016-10-05 389677 ENSG00000183808 OTTHUMG00000164317 uc003yfz.5 NM_203390 CCDS43755 Q8IXT5 "MGI:1919647|MGI:1924854" RGD:1307658 RBM12B +HGNC:28818 RBM12B-AS1 RBM12B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q22.1 08q22.1 PRO1905 C8orf39 "chromosome 8 open reading frame 39|RBM12B antisense RNA 1 (non-protein coding)" 2005-07-27 2012-04-11 2012-08-15 2015-02-09 55472 ENSG00000279331 OTTHUMG00000187194 uc011lgj.2 AF116672 NR_027259 Q9P1G2 RBM12B-AS1 +HGNC:43878 RBM12B-AS2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-04-30 +HGNC:14219 RBM14 RNA binding motif protein 14 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "SIP|SYTIP1|COAA|DKFZp779J0927" "coactivator activator|SYT interacting protein" RNA binding motif containing 725 2001-02-06 2014-11-19 10432 ENSG00000239306 OTTHUMG00000140380 uc001oit.4 AF080561 NM_006328 "CCDS8147|CCDS55772|CCDS55773" Q96PK6 9285794 MGI:1929092 RGD:620542 RBM14 612409 +HGNC:38840 RBM14-RBM4 RBM14-RBM4 readthrough other readthrough Approved 11q13.2 11q13.2 2011-02-21 2014-11-19 100526737 ENSG00000248643 OTTHUMG00000160813 uc009yrk.4 NM_001198845.1 "CCDS55774|CCDS55775" +HGNC:14959 RBM15 RNA binding motif protein 15 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "OTT|OTT1" one twenty-two RNA binding motif containing 725 2001-05-10 2016-10-05 64783 ENSG00000162775 OTTHUMG00000011284 uc021orn.2 AF368063 NM_022768 "CCDS822|CCDS59198" Q96T37 "11431691|11344311" MGI:2443205 RGD:1592713 RBM15 606077 409871 +HGNC:24303 RBM15B RNA binding motif protein 15B protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "HUMAGCGB|OTT3" RNA binding motif containing 725 2004-11-10 2016-10-05 29890 ENSG00000259956 OTTHUMG00000156896 uc003dbd.4 AL831838 NM_013286 CCDS33764 Q8NDT2 16129689 MGI:1923598 RGD:1305937 RBM15B 612602 +HGNC:16944 RBM17 RNA binding motif protein 17 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "SPF45|MGC14439" splicing factor 45kDa "G-patch domain containing|RNA binding motif containing" "579|725" 2004-01-30 2014-11-19 84991 ENSG00000134453 OTTHUMG00000017618 uc010qav.3 AF083384 NM_032905 CCDS7077 Q96I25 9731529 MGI:1924188 RGD:1311208 RBM17 606935 +HGNC:50366 RBM17P1 RNA binding motif protein 17 pseudogene 1 pseudogene pseudogene Approved 9p12 09p12 2014-04-24 2016-10-05 100133330 ENSG00000226625 OTTHUMG00000019952 NG_009948 PGOHUM00000236464 +HGNC:50367 RBM17P2 RNA binding motif protein 17 pseudogene 2 pseudogene pseudogene Approved 9q21.11 09q21.11 2014-04-24 2015-02-09 642389 ENSG00000273999 OTTHUMG00000188267 NG_009950 PGOHUM00000303923 +HGNC:50368 RBM17P3 RNA binding motif protein 17 pseudogene 3 pseudogene pseudogene Approved 9p11.2 09p11.2 2014-04-24 2014-04-24 100132949 ENSG00000237207 OTTHUMG00000058637 NG_009949 PGOHUM00000236092 +HGNC:50369 RBM17P4 RNA binding motif protein 17 pseudogene 4 pseudogene pseudogene Approved 15q14 15q14 2014-04-24 2014-04-24 100128974 ENSG00000259585 OTTHUMG00000172344 NG_009947 PGOHUM00000264436 +HGNC:28413 RBM18 RNA binding motif protein 18 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 MGC2734 RNA binding motif containing 725 2004-02-09 2016-10-05 92400 ENSG00000119446 OTTHUMG00000020602 uc004bma.3 AK057676 NM_033117 CCDS6839 Q96H35 12477932 MGI:1915139 RGD:1307411 RBM18 +HGNC:29098 RBM19 RNA binding motif protein 19 protein-coding gene gene with protein product Approved 12q24.21 12q24.21 "DKFZp586F1023|KIAA0682" RNA binding motif containing 725 2004-03-02 2013-02-12 9904 ENSG00000122965 OTTHUMG00000169646 uc009zwi.3 AL117547 NM_016196 CCDS9172 Q9Y4C8 "9734811|11230166" MGI:1921361 RGD:1308928 RBM19 616444 +HGNC:27424 RBM20 RNA binding motif protein 20 protein-coding gene gene with protein product Approved 10q25.2 10q25.2 RNA binding motif containing 725 2004-04-07 2016-10-12 282996 ENSG00000203867 OTTHUMG00000019043 uc001kzf.2 BX648563 NM_001134363 CCDS44477 Q5T481 MGI:1920963 RGD:1307427 LRG_382|http://www.lrg-sequence.org/LRG/LRG_382 RBM20 613171 218040 +HGNC:25503 RBM22 RNA binding motif protein 22 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "FLJ10290|ZC3H16|fSAP47|Cwc2" functional spliceosome-associated protein 47 "Zinc fingers CCCH-type|RNA binding motif containing" "73|725" 2004-04-23 2014-11-19 55696 ENSG00000086589 OTTHUMG00000163589 uc003lst.4 AL136933 NM_018047 CCDS34278 Q9NW64 "20013661|19133299" MGI:1914060 RGD:1305770 RBM22 612430 +HGNC:31466 RBM22P1 RNA binding motif protein 22 pseudogene 1 pseudogene pseudogene Approved 18q11.2 18q11.2 2004-04-23 2015-03-06 400645 ENSG00000265097 OTTHUMG00000179592 NG_023396 PGOHUM00000294639 +HGNC:39695 RBM22P2 RNA binding motif protein 22 pseudogene 2 pseudogene pseudogene Approved 13q12.3 13q12.3 2011-03-23 2015-03-06 100271871 ENSG00000213411 OTTHUMG00000016672 NG_011578 PGOHUM00000291911 +HGNC:39696 RBM22P3 RNA binding motif protein 22 pseudogene 3 pseudogene pseudogene Approved 7p11.2 07p11.2 2011-03-23 2015-03-06 100128867 ENSG00000226485 OTTHUMG00000156300 NG_009406 PGOHUM00000302654 +HGNC:39697 RBM22P4 RNA binding motif protein 22 pseudogene 4 pseudogene pseudogene Approved 6p21.1 06p21.1 2011-03-23 2015-03-06 100271870 ENSG00000277769 OTTHUMG00000187623 NG_011575 PGOHUM00000301802 +HGNC:39698 RBM22P5 RNA binding motif protein 22 pseudogene 5 pseudogene pseudogene Approved 9q21.13 09q21.13 2011-03-23 2015-03-06 100133206 ENSG00000231137 OTTHUMG00000020038 NG_011576 PGOHUM00000303939 +HGNC:39699 RBM22P6 RNA binding motif protein 22 pseudogene 6 pseudogene pseudogene Approved Xp11.22 Xp11.22 RBM22P10 RNA binding motif protein 22 pseudogene 10 2011-03-23 2015-03-03 644509 ENSG00000275643 OTTHUMG00000188635 NG_011579 PGOHUM00000304624 +HGNC:39700 RBM22P7 RNA binding motif protein 22 pseudogene 7 pseudogene pseudogene Approved Xp11.22 Xp11.22 RBM22P9 RNA binding motif protein 22 pseudogene 9 2011-03-23 2015-03-06 106478953 ENSG00000223395 OTTHUMG00000021556 NG_043751 PGOHUM00000305070 +HGNC:39704 RBM22P11 RNA binding motif protein 22 pseudogene 11 pseudogene pseudogene Approved Xp11.22 Xp11.22 RBM22P8 RNA binding motif protein 22 pseudogene 8 2011-03-23 2015-03-06 100132115 NG_011615 PGOHUM00000305071 +HGNC:49207 RBM22P12 RNA binding motif protein 22 pseudogene 12 pseudogene pseudogene Approved 16p11.2 16p11.2 2013-10-08 2015-03-06 100131641 ENSG00000260631 OTTHUMG00000154500 NG_011573 PGOHUM00000293783 +HGNC:49208 RBM22P13 RNA binding motif protein 22 pseudogene 13 pseudogene pseudogene Approved 16p11.2 16p11.2 2013-10-08 2015-03-06 2015-03-06 100130603 ENSG00000261284 OTTHUMG00000176533 NG_011574 PGOHUM00000293787 +HGNC:20155 RBM23 RNA binding motif protein 23 protein-coding gene gene with protein product Approved 14q11.1 14q11.1 "FLJ10482|CAPERbeta" coactivator of activating protein-1 and estrogen recep- tors beta RNPC4 RNA-binding region (RNP1, RRM) containing 4 RNA binding motif containing 725 2002-12-18 2004-04-23 2004-04-23 2014-11-19 55147 ENSG00000100461 OTTHUMG00000171467 uc001whg.4 AF275678 XM_017021398 "CCDS41919|CCDS41920|CCDS41921|CCDS76658" Q86U06 15694343 RBM23 +HGNC:21539 RBM24 RNA binding motif protein 24 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "FLJ30829|dJ259A10.1" RNPC6 RNA-binding region (RNP1, RRM) containing 6 RNA binding motif containing 725 2003-06-24 2004-04-23 2004-04-23 2015-08-26 221662 ENSG00000112183 OTTHUMG00000014306 uc003nbz.5 BC040928 NM_153020 "CCDS4538|CCDS47378|CCDS47379" Q9BX46 MGI:3610364 RGD:1584029 RBM24 +HGNC:23244 RBM25 RNA binding motif protein 25 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 "S164|fSAP94|NET52|Snu71" functional spliceosome-associated protein 94 RNPC7 RNA-binding region (RNP1, RRM) containing 7 RNA binding motif containing 725 2003-12-09 2004-04-29 2004-04-23 2016-10-05 58517 ENSG00000119707 OTTHUMG00000167540 uc001xno.4 BX647116 XM_027330 CCDS32113 P49756 "9847074|7596406" MGI:1914289 RGD:1308755 RBM25 612427 +HGNC:20327 RBM26 RNA binding motif protein 26 protein-coding gene gene with protein product Approved 13q31.1 13q31.1 "PRO1777|SE70-2|FLJ20957|ZC3H17|ARRS2|PPP1R132" "acidic rich RS domain containing 2|protein phosphatase 1, regulatory 132" C13orf10 chromosome 13 open reading frame 10 "Zinc fingers CCCH-type|Protein phosphatase 1 regulatory subunits|RNA binding motif containing" "73|694|725" 2003-01-24 2006-06-22 2006-06-22 2014-11-19 64062 ENSG00000139746 OTTHUMG00000017133 uc001vky.4 AF116667 NM_022118 "CCDS9462|CCDS66566|CCDS73591" Q5T8P6 "11149944|15741184" MGI:1921463 RGD:1308297 RBM26 +HGNC:39805 RBM26-AS1 RBM26 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q31.1 13q31.1 RBM26 antisense RNA 1 (non-protein coding) 2011-03-29 2012-08-15 2014-11-19 100505538 ENSG00000227354 OTTHUMG00000017131 uc001vle.4 BC034812 NR_038991 +HGNC:29243 RBM27 RNA binding motif protein 27 protein-coding gene gene with protein product Approved 5q32 05q32 "KIAA1311|ARRS1|Psc1|ZC3H20" acidic rich RS domain containing 1 "Zinc fingers CCCH-type|RNA binding motif containing" "73|725" 2004-04-23 2015-07-06 54439 ENSG00000091009 OTTHUMG00000163436 uc003lnz.5 AL833706 XM_291128 CCDS43378 Q9P2N5 "10718198|15741184" MGI:2147194 RGD:1311966 RBM27 +HGNC:21863 RBM28 RNA binding motif protein 28 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 FLJ10377 RNA binding motif containing 725 2004-06-03 2016-10-05 55131 ENSG00000106344 OTTHUMG00000157711 uc031szb.2 AK001239 NM_018077 "CCDS5801|CCDS55159" Q9NW13 MGI:2655711 RGD:1311336 RBM28 612074 159449 +HGNC:27223 RBM33 RNA binding motif protein 33 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "DKFZp686F102|MGC20460|DKFZp434D1319" PRR8 proline rich 8 RNA binding motif containing 725 2005-04-19 2015-08-25 155435 ENSG00000184863 OTTHUMG00000150260 uc010lqk.2 AL832196 NM_001008408 CCDS5941 Q96EV2 MGI:1919670 RGD:1310651 RBM33 +HGNC:28965 RBM34 RNA binding motif protein 34 protein-coding gene gene with protein product Approved 1q42.3 01q42.3 KIAA0117 RNA binding motif containing 725 2005-06-01 2016-04-25 23029 ENSG00000188739 OTTHUMG00000039620 uc001hwn.3 NM_015014 CCDS41477 P42696 "7788527|15134903" MGI:1098653 RGD:1310161 RBM34 +HGNC:15818 RBM38 RNA binding motif protein 38 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 "HSRNASEB|SEB4D|seb4B|dJ800J21.2" RNPC1 RNA-binding region (RNP1, RRM) containing 1 RNA binding motif containing 725 2001-09-17 2006-07-11 2006-07-11 2014-11-19 55544 ENSG00000132819 OTTHUMG00000032820 uc010zzj.3 X75314 NM_183425 "CCDS46617|CCDS46618" Q9H0Z9 MGI:1889294 RGD:1308503 RBM38 612428 +HGNC:15923 RBM39 RNA binding motif protein 39 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "CC1.3|HCC1|CAPER|fSAP59|CAPERalpha" "coactivator of activating protein-1 and estrogen receptors|functional spliceosome-associated protein 59" RNPC2 RNA-binding region (RNP1, RRM) containing 2 RNA binding motif containing 725 2001-06-21 2006-07-11 2006-07-11 2014-11-19 9584 ENSG00000131051 OTTHUMG00000032358 uc002xeb.4 L10910 NM_184237 "CCDS13265|CCDS13266|CCDS56186" Q14498 "8227358|15694343|21551269" MGI:2157953 RGD:1310071 RBM39 604739 +HGNC:25617 RBM41 RNA binding motif protein 41 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 FLJ11016 RNA binding motif containing 725 2006-07-11 2014-11-18 55285 ENSG00000089682 OTTHUMG00000022156 uc004emz.5 BC006986 NM_018301 "CCDS14526|CCDS55472" Q96IZ5 12477932 MGI:2444923 RGD:1590579 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RBM41 RBM41 +HGNC:28117 RBM42 RNA binding motif protein 42 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 MGC10433 RNA binding motif containing 725 2007-05-01 2014-11-18 79171 ENSG00000126254 OTTHUMG00000182063 uc002oan.4 BC004204 NM_024321 CCDS12468 Q9BTD8 12477932 MGI:1915285 RGD:1306184 RBM42 613232 +HGNC:24790 RBM43 RNA binding motif protein 43 protein-coding gene gene with protein product Approved 2q23.3 02q23.3 FLJ45645 C2orf38 chromosome 2 open reading frame 38 RNA binding motif containing 725 2006-05-08 2007-01-30 2007-01-30 2014-11-18 375287 ENSG00000184898 OTTHUMG00000131866 uc002txh.4 AK127552 NM_198557 CCDS2191 Q6ZSC3 MGI:1918934 RGD:1306676 RBM43 +HGNC:46024 RBM43P1 RNA binding motif protein 43 pseudogene 1 pseudogene pseudogene Approved 3p14.1 03p14.1 2013-03-19 2013-03-19 100131568 ENSG00000239263 OTTHUMG00000158769 NG_009048 PGOHUM00000237645 +HGNC:24756 RBM44 RNA binding motif protein 44 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 FLJ40411 RNA binding motif containing 725 2007-06-20 2014-11-19 375316 ENSG00000177483 OTTHUMG00000152937 uc002vxi.5 AK097730 NM_001080504 CCDS46554 Q6ZP01 MGI:2685663 RGD:1566074 RBM44 +HGNC:24468 RBM45 RNA binding motif protein 45 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 "DRB1|FLJ44612" developmentally regulated RNA binding protein 1 RNA binding motif containing 725 2007-07-26 2014-11-19 129831 ENSG00000155636 OTTHUMG00000154202 uc002ulv.4 AF526533 NM_152945 CCDS33335 Q8IUH3 12220514 MGI:2387367 RGD:628862 RBM45 608888 +HGNC:28401 RBM46 RNA binding motif protein 46 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "MGC27016|CT68" cancer/testis antigen 68 RNA binding motif containing 725 2007-10-24 2014-11-19 166863 ENSG00000151962 OTTHUMG00000161543 uc003ioo.5 BC028588 NM_144979 "CCDS3790|CCDS64085|CCDS64086" Q8TBY0 12477932 MGI:3645057 RGD:1560205 RBM46 +HGNC:30358 RBM47 RNA binding motif protein 47 protein-coding gene gene with protein product Approved 4p14 04p14 "FLJ20273|NET18" RNA binding motif containing 725 2007-10-25 2014-11-18 54502 ENSG00000163694 OTTHUMG00000128598 uc003gvd.3 AK000280 NM_019027 "CCDS3460|CCDS43223" A0AV96 MGI:2384294 RGD:1359713 RBM47 +HGNC:21785 RBM48 RNA binding motif protein 48 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 "DKFZp564O0523|HSPC304" C7orf64 chromosome 7 open reading frame 64 RNA binding motif containing 725 2008-08-11 2011-12-09 2011-12-09 2014-11-19 84060 ENSG00000127993 OTTHUMG00000159535 uc003ulz.4 AL136619 NM_032120 CCDS43615 Q5RL73 MGI:2442653 RGD:1310794 +HGNC:44054 RBM48P1 RNA binding motif protein 48 pseudogene 1 pseudogene pseudogene Approved 4q28.1 04q28.1 2012-05-30 2012-05-30 132817 ENSG00000223620 OTTHUMG00000161147 NG_022076 PGOHUM00000259956 +HGNC:9907 RBMS1 RNA binding motif single stranded interacting protein 1 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "SCR2|MSSP-1|MSSP-2|MSSP-3|YC1|HCC-4|DKFZp564H0764" "suppressor of cdc 2 (cdc13) with RNA binding motif 2|c-myc gene single strand binding protein 2" C2orf12 chromosome 2 open reading frame 12 RNA binding motif containing 725 1998-02-27 2016-04-14 2016-04-14 5937 ENSG00000153250 OTTHUMG00000132031 uc002ubo.4 D28482 NM_016836 CCDS2213 P29558 "8041632|8134115|7838710" MGI:1861774 RGD:1307777 RBMS1 602310 +HGNC:9908 RBMS1P1 RNA binding motif single stranded interacting protein 1 pseudogene 1 pseudogene pseudogene Approved 12q14.3 12q14.3 MSSP1 RBMS1P RNA binding motif, single stranded interacting protein 1, pseudogene 1998-02-27 2010-03-04 2016-04-14 2016-04-14 5938 ENSG00000225422 D82351 NG_000866 8871567 PGOHUM00000239501 +HGNC:9909 RBMS2 RNA binding motif single stranded interacting protein 2 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 SCR3 RNA binding motif containing 725 1998-02-27 2016-04-14 2016-10-05 5939 ENSG00000076067 OTTHUMG00000170488 uc001sln.3 D28483 NM_002898 CCDS8923 Q15434 8041632 MGI:1861776 RGD:1304813 RBMS2 602387 +HGNC:30994 RBMS2P1 RNA binding motif single stranded interacting protein 2 pseudogene 1 pseudogene pseudogene Approved 12q22 12q22 RBMS2P "RNA binding motif, single stranded interacting protein 2 pseudogene|RNA binding motif, single stranded interacting protein 2 pseudogene 1" 2007-08-17 2010-03-05 2016-04-14 2016-04-14 643427 ENSG00000213250 OTTHUMG00000165432 NG_008697 PGOHUM00000239547 +HGNC:13427 RBMS3 RNA binding motif single stranded interacting protein 3 protein-coding gene gene with protein product Approved 3p24.1 03p24.1 RNA-binding protein "RNA binding motif, single stranded interacting protein|RNA binding motif, single stranded interacting protein 3" RNA binding motif containing 725 2001-06-25 2016-04-14 2016-10-05 27303 ENSG00000144642 OTTHUMG00000155699 uc003cek.4 AF023259 NM_001003792 "CCDS33724|CCDS33725|CCDS33726|CCDS54557|CCDS54558" Q6XE24 10675610 MGI:2444477 RGD:1588240 RBMS3 605786 +HGNC:39987 RBMS3-AS1 RBMS3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p24.1 03p24.1 RBMS3 antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100873977 ENSG00000235593 OTTHUMG00000155691 uc062hsw.1 NR_046556 +HGNC:39988 RBMS3-AS2 RBMS3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p24.1 03p24.1 RBMS3 antisense RNA 2 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100873978 ENSG00000203506 OTTHUMG00000155692 uc062hsm.1 +HGNC:39989 RBMS3-AS3 RBMS3 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 3p24.1 03p24.1 RBMS3 antisense RNA 3 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100873979 ENSG00000235904 OTTHUMG00000155693 uc062hsg.1 NR_109804 +HGNC:9910 RBMX RNA binding motif protein, X-linked protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "RNMX|hnRNP-G|HNRNPG" heterogeneous nuclear ribonucleoprotein G RNA binding motif protein, X chromosome RNA binding motif containing 725 2000-01-31 2003-09-12 2016-10-05 27316 ENSG00000147274 OTTHUMG00000022517 uc011mwf.2 NM_002139 "CCDS14661|CCDS55510" P38159 "10391206|10391207" MGI:1343044 RGD:1565256 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RBMX RBMX 300199 +HGNC:24282 RBMX2 RNA binding motif protein, X-linked 2 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "CGI-79|Snu17" RNA binding motif containing 725 2004-06-02 2015-01-12 51634 ENSG00000134597 OTTHUMG00000022395 uc004evt.3 AF078865 NM_016024 CCDS43993 Q9Y388 10810093 MGI:1919414 RGD:1562693 RBMX2 +HGNC:39923 RBMX2P1 RNA binding motif protein, X-linked 2 pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 2011-04-12 2014-11-19 100128341 ENSG00000226406 OTTHUMG00000074320 NG_021989 PGOHUM00000239035 +HGNC:39924 RBMX2P2 RNA binding motif protein, X-linked 2 pseudogene 2 pseudogene pseudogene Approved Xq27.2 Xq27.2 2011-04-12 2014-11-19 100132808 ENSG00000213423 OTTHUMG00000022557 NG_022644 PGOHUM00000241577 +HGNC:39925 RBMX2P3 RNA binding motif protein, X-linked 2 pseudogene 3 pseudogene pseudogene Approved 1p12 01p12 2011-04-12 2014-11-19 100421047 ENSG00000223575 OTTHUMG00000012340 NG_026974 PGOHUM00000244162 +HGNC:39926 RBMX2P4 RNA binding motif protein, X-linked 2 pseudogene 4 pseudogene pseudogene Approved 7p21.3 07p21.3 2011-04-12 2014-11-19 100862677 ENSG00000230879 OTTHUMG00000152351 NG_032115 +HGNC:39927 RBMX2P5 RNA binding motif protein, X-linked 2 pseudogene 5 pseudogene pseudogene Approved 5q14.1 05q14.1 2011-04-12 2014-11-19 391804 ENSG00000227087 OTTHUMG00000162532 NG_028951 PGOHUM00000251320 +HGNC:25073 RBMXL1 RNA binding motif protein, X-linked like 1 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 KAT3 kynurenine aminotransferase III RNA binding motif containing 725 2005-06-02 2007-01-04 2016-06-17 2016-06-17 494115 ENSG00000213516 OTTHUMG00000010661 uc009wcx.4 BC012942 NM_019610 CCDS716 Q96E39 10441733 RGD:1306751 +HGNC:17886 RBMXL2 RNA binding motif protein, X-linked like 2 protein-coding gene gene with protein product Approved 11p15 11p15 "HNRNPG-T|HNRPGT" heterogeneous nuclear ribonucleoprotein G T RNA binding motif containing 725 2007-07-13 2016-06-17 2016-06-17 27288 ENSG00000170748 OTTHUMG00000165509 uc001mfc.3 AF069682 NM_014469 CCDS7777 O75526 10958650 MGI:1923822 RGD:1598286 RBMXL2 605444 +HGNC:26859 RBMXL3 RNA binding motif protein, X-linked like 3 protein-coding gene gene with protein product Approved Xq23 Xq23 FLJ40249 CXorf55 chromosome X open reading frame 55 RNA binding motif containing 725 2006-02-06 2009-03-24 2016-06-17 2016-06-17 139804 ENSG00000175718 OTTHUMG00000022230 uc011mte.2 AK097568 NM_001145346 CCDS55478 Q8N7X1 RBMXL3 +HGNC:9911 RBMXP1 RNA binding motif protein, X-linked pseudogene 1 pseudogene pseudogene Approved 6p12.3 06p12.3 HNRNP-G HNRPG RNA binding motif protein, X chromosome pseudogene 1 1992-08-26 2003-09-12 2016-10-05 3186 ENSG00000216835 OTTHUMG00000014807 NG_001022 NG_001022 "1551662|10391206" PGOHUM00000243181 +HGNC:23284 RBMXP2 RNA binding motif protein, X-linked pseudogene 2 pseudogene pseudogene Approved 9p21.1 09p21.1 2006-09-21 2010-09-24 441391 ENSG00000215210 OTTHUMG00000019727 NG_004760 PGOHUM00000236424 +HGNC:33949 RBMXP3 RNA binding motif protein, X-linked pseudogene 3 pseudogene pseudogene Approved 11q14.1 11q14.1 2008-01-23 2014-11-19 143543 NR_002197 PGOHUM00000242821 +HGNC:34028 RBMXP4 RNA binding motif protein, X-linked pseudogene 4 pseudogene pseudogene Approved 4q25 04q25 2008-03-17 2014-11-19 100132580 ENSG00000249465 OTTHUMG00000161038 XR_037807 PGOHUM00000245652 +HGNC:9912 RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1 protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 "YRRM1|YRRM2" "RBM1|RBM2" RNA binding motif protein, Y chromosome, family 1, member A1 RNA binding motif containing 725 1994-12-15 2003-09-12 2016-10-05 5940 ENSG00000234414 OTTHUMG00000043592 uc065cui.1 NM_005058 CCDS14796 P0DJD3 "8269511|9598316" RBMY1A1 400006 168351 +HGNC:9913 RBMY1A2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-10-12 +HGNC:18849 RBMY1A3P RNA binding motif protein, Y-linked, family 1, member A3 pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 RNA binding motif protein, Y chromosome, family 1, member A3 pseudogene 2002-07-22 2003-09-12 2014-11-19 286557 ENSG00000197038 OTTHUMG00000041536 NR_001547 PGOHUM00000261003 +HGNC:23914 RBMY1B RNA binding motif protein, Y-linked, family 1, member B protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 RNA binding motif containing 725 2004-12-10 2015-09-07 378948 ENSG00000242875 OTTHUMG00000042045 uc004fuo.4 NM_001006121 CCDS35479 A6NDE4 12815422 RBMY1B +HGNC:9914 RBMY1C RNA binding motif protein, Y-linked, family 1, member C other unknown Approved Yq11.23 Yq11.23 RNA binding motif protein, Y chromosome, family 1, member C RNA binding motif containing 725 1998-06-04 2003-09-12 2012-04-20 5942 P0DJD4 9598316 +HGNC:23915 RBMY1D RNA binding motif protein, Y-linked, family 1, member D protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 RNA binding motif containing 725 2004-12-10 2015-09-07 378949 ENSG00000244395 OTTHUMG00000043598 uc004fuu.3 NM_001006120 "CCDS35480|CCDS83521" P0C7P1 12815422 +HGNC:23916 RBMY1E RNA binding motif protein, Y-linked, family 1, member E protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 RNA binding motif containing 725 2004-12-10 2015-09-07 378950 ENSG00000242389 OTTHUMG00000043602 uc004fuw.4 NM_001006118 CCDS35481 A6NEQ0 12815422 RBMY1E +HGNC:23974 RBMY1F RNA binding motif protein, Y-linked, family 1, member F protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 MGC33094 RNA binding motif containing 725 2004-12-10 2015-09-07 159163 ENSG00000169800 OTTHUMG00000043593 uc004fva.4 BC030018 NM_152585 CCDS35483 Q15415 12815422 RBMY1F +HGNC:9915 RBMY1GP RNA binding motif protein, Y-linked, family 1, member G, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 RBMY1G RNA binding motif protein, Y chromosome, family 1, member G 1998-06-04 2003-09-12 2014-11-19 100287769 NG_027927 PGOHUM00000249978 +HGNC:9916 RBMY1HP RNA binding motif protein, Y-linked, family 1, member H, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 RBMY1H "RNA binding motif protein, Y chromosome, family 1, member H|RNA binding motif protein, Y-linked, family 1, member H" 1998-06-04 2011-09-15 2011-09-15 2014-11-18 5944 ENSG00000169811 OTTHUMG00000042043 NM_005404 9598316 PGOHUM00000261063 +HGNC:23917 RBMY1J RNA binding motif protein, Y-linked, family 1, member J protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 RNA binding motif containing 725 2004-12-10 2015-09-07 378951 ENSG00000226941 OTTHUMG00000043594 uc004fvd.4 NM_001006117 CCDS35484 Q15415 12815422 RGD:9125062 RBMY1J +HGNC:38750 RBMY1KP RNA binding motif protein, Y-linked, family 1, member K, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 RBMY1K 2010-08-03 2014-11-19 100874497 ENSG00000229234 OTTHUMG00000043585 NG_029412 PGOHUM00000234024 +HGNC:9917 RBMY2AP RNA binding motif protein, Y-linked, family 2, member A pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 RBMY2A RNA binding motif protein, Y-linked, family 2, member A 1998-06-04 2003-11-03 2003-11-03 2016-10-05 5945 ENSG00000226092 OTTHUMG00000043606 NG_003064 "9598316|12815422" PGOHUM00000233805 +HGNC:9918 RBMY2BP RNA binding motif protein, Y-linked, family 2, member B pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 RBMY2B RNA binding motif protein, Y-linked, family 2, member B 1998-06-04 2003-11-05 2003-11-03 2016-10-05 375850 ENSG00000224657 OTTHUMG00000043855 NM_005405 "9598316|12815422" +HGNC:23260 RBMY2CP RNA binding motif protein, Y-linked, family 2, member C pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2003-11-03 2014-11-18 140123 ENSG00000215540 OTTHUMG00000044057 NG_003042 12815422 PGOHUM00000249970 +HGNC:23259 RBMY2DP RNA binding motif protein, Y-linked, family 2, member D pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2003-11-03 2014-11-19 347598 ENSG00000215507 OTTHUMG00000045283 NG_003043 12815422 +HGNC:23890 RBMY2EP RNA binding motif protein, Y-linked, family 2, member E pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2004-12-03 2015-01-29 159125 ENSG00000223637 OTTHUMG00000042038 U94388 NR_001574 "12815422|9344660" PGOHUM00000305531 +HGNC:23891 RBMY2FP RNA binding motif protein, Y-linked, family 2, member F pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 MGC26641 2004-12-03 2014-11-19 159162 ENSG00000243040 OTTHUMG00000043589 U94387 NR_002193 12815422 +HGNC:23892 RBMY2GP RNA binding motif protein, Y-linked, family 2, member G pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-12-03 2013-02-12 378952 ENSG00000223744 OTTHUMG00000040954 NG_003081 12815422 +HGNC:23893 RBMY2HP RNA binding motif protein, Y-linked, family 2, member H pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-12-03 2014-11-19 378953 ENSG00000238073 OTTHUMG00000041010 NG_003082 12815422 PGOHUM00000233681 +HGNC:23918 RBMY2JP RNA binding motif protein, Y-linked, family 2, member J pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-12-03 2013-02-12 378955 ENSG00000227204 OTTHUMG00000041057 NG_003083 12815422 +HGNC:23888 RBMY2KP RNA binding motif protein, Y-linked, family 2, member K pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-12-03 2013-02-12 140100 ENSG00000225809 OTTHUMG00000041263 NG_003074 12815422 +HGNC:23889 RBMY2MP RNA binding motif protein, Y-linked, family 2, member M pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-12-03 2013-02-12 140101 NG_003075 12815422 +HGNC:23919 RBMY2NP RNA binding motif protein, Y-linked, family 2, member N pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-12-10 2014-11-19 378956 ENSG00000229208 OTTHUMG00000041598 NG_003084 12815422 PGOHUM00000233717 +HGNC:23894 RBMY2OP RNA binding motif protein, Y-linked, family 2, member O pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-12-10 2013-02-12 379005 ENSG00000234950 OTTHUMG00000041596 NG_003085 12815422 +HGNC:23895 RBMY2QP RNA binding motif protein, Y-linked, family 2, member Q pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2004-12-10 2013-02-12 379006 ENSG00000236718 OTTHUMG00000041600 NG_003086 12815422 +HGNC:23896 RBMY2SP RNA binding motif protein, Y-linked, family 2, member S pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2004-12-10 2014-11-19 379007 NG_003087 12815422 +HGNC:23897 RBMY2TP RNA binding motif protein, Y-linked, family 2, member T pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2004-12-10 2016-10-05 379008 ENSG00000237269 OTTHUMG00000042040 NG_003088 12815422 +HGNC:23898 RBMY2UP RNA binding motif protein, Y-linked, family 2, member U pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2004-12-10 2014-11-19 379009 ENSG00000225615 OTTHUMG00000043584 NG_003089 12815422 +HGNC:23899 RBMY2VP RNA binding motif protein, Y-linked, family 2, member V pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2004-12-10 2014-11-19 379010 NG_003090 12815422 +HGNC:23900 RBMY2WP RNA binding motif protein, Y-linked, family 2, member W pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2004-12-10 2014-11-19 379011 ENSG00000230727 OTTHUMG00000043850 NG_003091 12815422 +HGNC:23901 RBMY2XP RNA binding motif protein, Y-linked, family 2, member X pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2004-12-10 2016-10-05 379012 ENSG00000234399 OTTHUMG00000045103 NG_003092 12815422 +HGNC:23902 RBMY2YP RNA binding motif protein, Y-linked, family 2, member Y pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2004-12-10 2016-10-05 379024 ENSG00000227633 OTTHUMG00000045208 NG_003070 12815422 +HGNC:23286 RBMY3AP RNA binding motif protein, Y-linked, family 3, member A pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 "SPATA14|RBMY4P|RBMY3P" 2003-11-21 2013-02-12 64593 ENSG00000231436 OTTHUMG00000041525 U94386 NR_001573 12815422 +HGNC:9919 RBP1 retinol binding protein 1 protein-coding gene gene with protein product Approved 3q23 03q23 "CRABP-I|CRBP1|CRBP|RBPC|CRBPI" cellular retinol binding protein 1 retinol-binding protein 1, cellular Fatty acid binding protein family 550 1986-01-01 2015-12-04 2016-10-05 5947 ENSG00000114115 OTTHUMG00000155751 uc003eti.2 NM_002899 "CCDS3110|CCDS46925|CCDS46926" P09455 "1654334|9858824" MGI:97876 RGD:3543 RBP1 180260 objectId:2546 +HGNC:9920 RBP2 retinol binding protein 2 protein-coding gene gene with protein product Approved 3q23 03q23 "CRBP2|RBPC2|CRBPII|CRABP-II" retinol-binding protein 2, cellular Fatty acid binding protein family 550 1986-01-01 2015-12-04 2015-12-04 5948 ENSG00000114113 OTTHUMG00000159956 uc003eth.4 U13831 NM_004164 CCDS3109 P50120 "7657783|10072590" MGI:97877 RGD:3544 RBP2 180280 objectId:2547 +HGNC:9921 RBP3 retinol binding protein 3 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 "D10S64|D10S65|D10S66|RP66" interstitial retinol-binding protein 3 retinol-binding protein 3, interstitial 1986-01-01 2015-12-04 2016-10-05 5949 ENSG00000265203 OTTHUMG00000188321 uc001jez.3 M22453 NM_002900 CCDS73119 P10745 MGI:97878 RGD:3545 RBP3 180290 288959 S41.950 objectId:2548 +HGNC:9922 RBP4 retinol binding protein 4 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 retinol-binding protein 4, plasma Lipocalins 631 2001-06-22 2015-12-04 2015-12-04 5950 ENSG00000138207 OTTHUMG00000018773 uc057uxf.1 BC020633 NM_006744 "CCDS31249|CCDS81488" P02753 MGI:97879 RGD:3546 RBP4 180250 356203 objectId:2549 +HGNC:15847 RBP5 retinol binding protein 5 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 CRBPIII retinol-binding protein 5, cellular Fatty acid binding protein family 550 2001-10-03 2015-12-04 2015-12-04 83758 ENSG00000139194 OTTHUMG00000168165 uc001qsq.4 AY007436 NM_031491 CCDS8574 P82980 11274389 RBP5 611866 objectId:2550 +HGNC:30316 RBP7 retinol binding protein 7 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 CRBPIV cellular retinol binding protein 7 retinol binding protein 7, cellular Fatty acid binding protein family 550 2004-03-17 2015-12-04 2015-12-04 116362 ENSG00000162444 OTTHUMG00000001798 uc001aqq.4 AF399927 NM_052960 CCDS109 Q96R05 12177003 MGI:1890409 RGD:1562168 RBP7 608604 objectId:2551 +HGNC:5724 RBPJ recombination signal binding protein for immunoglobulin kappa J region protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "SUH|IGKJRB|RBPJK|KBF2|RBP-J|CBF1" suppressor of hairless homolog (Drosophila) "IGKJRB1|RBPSUH" recombining binding protein suppressor of hairless (Drosophila) 1993-04-23 2007-02-26 2007-02-26 2016-04-06 3516 ENSG00000168214 OTTHUMG00000097793 uc003grx.3 L07872 NM_015874 "CCDS3436|CCDS3437|CCDS33969|CCDS43219" Q06330 "8406481|9290259|16354684" MGI:96522 RGD:1593096 RBPJ 147183 310406 +HGNC:13761 RBPJL recombination signal binding protein for immunoglobulin kappa J region like protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "RBP-L|SUH|SUHL" RBPSUHL "recombining binding protein suppressor of hairless (Drosophila)-like|recombination signal binding protein for immunoglobulin kappa J region-like" 2000-12-14 2007-02-26 2016-04-06 2016-04-06 11317 ENSG00000124232 OTTHUMG00000033055 uc002xns.5 AB024964 NM_014276 "CCDS13349|CCDS63283|CCDS63284" Q9UBG7 9929984 MGI:1196616 RGD:1304786 RBPJL 616104 +HGNC:5725 RBPJP1 RBPJ pseudogene 1 pseudogene pseudogene Approved 9p13-p12 09p13-p12 "IGKJRBP1|RBPSUHP1" recombining binding protein suppressor of hairless (Drosophila) pseudogene 1 1993-04-23 2007-02-26 2007-02-26 2009-10-26 100310842 L07873 NG_013295 "8406481|9290259" +HGNC:5726 RBPJP2 RBPJ pseudogene 2 pseudogene pseudogene Approved 9q21.11 09q21.11 "IGKJRBP2|RBPSUHP2" recombining binding protein suppressor of hairless (Drosophila) pseudogene 2 1993-04-23 2007-02-26 2007-02-26 2016-10-05 3517 ENSG00000274181 OTTHUMG00000188564 NG_001151 "8406481|9290259" PGOHUM00000304299 +HGNC:13686 RBPJP3 RBPJ pseudogene 3 pseudogene pseudogene Approved 9p13 09p13 K2 RBPSUHP3 recombining binding protein suppressor of hairless (Drosophila) pseudogene 3 2000-09-28 2007-02-26 2007-02-26 2009-10-26 58164 L34543 NG_001292 7873751 +HGNC:13687 RBPJP4 RBPJ pseudogene 4 pseudogene pseudogene Approved 9q13 09q13 K7 RBPSUHP4 "recombining binding protein suppressor of hairless (Drosophila) pseudogene 4|rec" 2000-09-28 2007-02-26 2007-02-26 2009-10-26 58163 L34544 NG_001291 7873751 +HGNC:37485 RBPJP5 RBPJ pseudogene 5 pseudogene pseudogene Approved 9p12 09p12 2009-10-26 2009-10-26 100288841 ENSG00000232239 OTTHUMG00000058627 BX664615 NG_013296 +HGNC:37486 RBPJP6 RBPJ pseudogene 6 pseudogene pseudogene Approved 9p11.1 09p11.1 2009-10-26 2016-10-05 643198 ENSG00000227924 OTTHUMG00000013226 BX088651 NG_013297 +HGNC:37487 RBPJP7 RBPJ pseudogene 7 pseudogene pseudogene Approved 9q13 09q13 2009-10-26 2016-10-05 100133122 ENSG00000234217 OTTHUMG00000013219 BX005266 NG_013298 +HGNC:19097 RBPMS RNA binding protein with multiple splicing protein-coding gene gene with protein product Approved 8p12 08p12 HERMES RNA binding motif containing 725 2003-02-25 2013-06-07 11030 ENSG00000157110 OTTHUMG00000163845 uc003xie.3 D84110 XM_017012980 "CCDS6077|CCDS34875|CCDS34876" Q93062 8855282 MGI:1334446 RGD:1561067 RBPMS 601558 +HGNC:48721 RBPMS-AS1 RBPMS antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8p12 08p12 2013-06-07 2013-06-07 100128750 ENSG00000254109 OTTHUMG00000163930 NR_046205 +HGNC:19098 RBPMS2 RNA binding protein with multiple splicing 2 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 RNA binding motif containing 725 2004-09-17 2015-03-09 348093 ENSG00000166831 OTTHUMG00000172423 uc002anq.4 AY369207 NM_194272 CCDS32271 Q6ZRY4 25064856 MGI:1919223 RGD:1561222 RBPMS2 +HGNC:50509 RBPMS2P1 RBPMS2 pseudogene 1 pseudogene pseudogene Approved 6q13 06q13 2014-05-15 2014-05-15 100421512 ENSG00000234025 OTTHUMG00000015019 NG_025832 PGOHUM00000243247 +HGNC:9923 RBPMSLP RNA binding protein with multiple splicing-like pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 RNA-binding protein with multiple splicing-like pseudogene 2000-05-23 2001-11-28 2016-10-05 54032 ENSG00000234159 OTTHUMG00000074345 NG_028762 PGOHUM00000239037 +HGNC:20759 RBSN rabenosyn, RAB effector protein-coding gene gene with protein product Approved 3p25.1 03p25.1 Rabenosyn-5 ZFYVE20 zinc finger, FYVE domain containing 20 Zinc fingers FYVE-type 81 2003-04-01 2014-12-03 2014-12-03 2014-12-03 64145 ENSG00000131381 OTTHUMG00000129860 AY009133 NM_022340 CCDS2623 Q9H1K0 "11062261|25233840" MGI:1925537 RGD:1305397 609511 +HGNC:9928 RBX1 ring-box 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "ROC1|RNF75|BA554C12.1" regulator of cullins 1 "ring-box 1|ring-box 1, E3 ubiquitin protein ligase" "Ring finger proteins|SCF complex" "58|1171" 1999-10-29 2016-04-05 2016-04-05 9978 ENSG00000100387 OTTHUMG00000151298 uc003azk.4 AF140598 NM_014248 CCDS14009 P62877 "10213691|10230407" MGI:1891829 RGD:1308453 RBX1 603814 +HGNC:29434 RC3H1 ring finger and CCCH-type domains 1 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "KIAA2025|roquin|RP5-1198E17.5|RNF198" KIAA2025 protein ring finger and CCCH-type zinc finger domains 1 "Ring finger proteins|Zinc fingers CCCH-type" "58|73" 2005-08-19 2010-09-15 2014-11-19 149041 ENSG00000135870 OTTHUMG00000037275 uc057nkw.1 AK093501 NM_172071 "CCDS30940|CCDS72987" Q5TC82 15917799 MGI:2685397 RGD:1563512 RC3H1 609424 +HGNC:41496 RC3H1-IT1 RC3H1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q25.1 01q25.1 RC3H1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 106481790 ENSG00000236535 OTTHUMG00000034823 uc057nlb.1 +HGNC:21461 RC3H2 ring finger and CCCH-type domains 2 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 "FLJ20301|FLJ20713|RNF164" MNAB "membrane associated DNA binding protein|ring finger and CCCH-type zinc finger domains 2" "Ring finger proteins|Zinc fingers CCCH-type" "58|73" 2004-05-20 2007-02-06 2010-09-15 2016-10-05 54542 ENSG00000056586 OTTHUMG00000020632 uc010mwc.1 AK000308 NM_018835 "CCDS43874|CCDS48014" Q9HBD1 10938276 MGI:2442789 RGD:1304833 RC3H2 615231 +HGNC:9929 RCA1 renal carcinoma associated 1 phenotype phenotype only Approved 3p14.2 03p14.2 HRCA1 renal carcinoma, familial, associated 1 1993-12-14 2012-03-02 2012-03-02 7690964 +HGNC:3040 RCAN1 regulator of calcineurin 1 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 DSCR1 Down syndrome critical region gene 1 1997-06-09 2007-06-26 2007-06-26 2016-10-05 1827 ENSG00000159200 OTTHUMG00000086235 uc002yuc.5 XM_017028282 "CCDS13637|CCDS33551|CCDS42921|CCDS74788|CCDS74790|CCDS82668" P53805 8595418 MGI:1890564 RGD:631338 RCAN1 602917 +HGNC:3041 RCAN2 regulator of calcineurin 2 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 ZAKI-4 DSCR1L1 Down syndrome critical region gene 1-like 1 1999-08-20 2007-06-26 2007-06-26 2014-11-19 10231 ENSG00000172348 OTTHUMG00000014782 uc003oyb.3 D83407 NM_001251973 "CCDS43469|CCDS59023" Q14206 8662924 MGI:1858219 RGD:69198 RCAN2 604876 +HGNC:3042 RCAN3 RCAN family member 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 DSCR1L2 Down syndrome critical region gene 1-like 2 1999-08-26 2007-06-26 2007-06-26 2015-02-02 11123 ENSG00000117602 OTTHUMG00000003298 uc001bjj.4 NM_001251984 "CCDS254|CCDS57980|CCDS57981|CCDS57982|CCDS72730|CCDS57979" Q9UKA8 10756093 MGI:1858220 RGD:1311826 RCAN3 605860 +HGNC:39009 RCAN3AS RCAN3 antisense other unknown Approved 1p36.11 01p36.11 2011-10-19 2011-07-29 2011-10-27 100750325 "HQ317424|HQ317425|HQ419072" NR_045408 "21042787|21961037" +HGNC:18243 RCBTB1 RCC1 and BTB domain containing protein 1 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "FLJ10716|CLLD7|CLLL7" regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 BTB domain containing 861 2003-05-02 2016-02-12 2016-10-05 55213 ENSG00000136144 OTTHUMG00000016915 uc001vde.1 AF334406 NM_018191 CCDS9418 Q8NDN9 11306461 MGI:1918580 RGD:1308467 RCBTB1 607867 +HGNC:1914 RCBTB2 RCC1 and BTB domain containing protein 2 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 CHC1L "chromosome condensation 1-like|regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2" BTB domain containing 861 2005-05-09 2005-05-09 2016-02-12 2016-10-05 1102 ENSG00000136161 OTTHUMG00000016902 uc001vci.5 AF060219 NM_001268 "CCDS9411|CCDS73570|CCDS73571|CCDS73572" O95199 9806834 MGI:1917200 RGD:735048 RCBTB2 603524 +HGNC:45167 RCBTB2P1 RCC1 and BTB domain containing protein 2 pseudogene 1 pseudogene pseudogene Approved 10q23.31 10q23.31 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 pseudogene 1 2013-02-28 2016-02-12 2016-02-12 100130253 ENSG00000235150 OTTHUMG00000018696 NG_022152 PGOHUM00000238577 +HGNC:1913 RCC1 regulator of chromosome condensation 1 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 CHC1 chromosome condensation 1 1986-01-01 2005-05-09 2005-05-09 2015-08-25 1104 ENSG00000180198 OTTHUMG00000003645 uc001bqc.2 X12654 NM_001269 "CCDS323|CCDS41295" P18754 7851910 MGI:1913989 RGD:1592835 RCC1 179710 +HGNC:14948 RCC1L RCC1 like protein-coding gene gene with protein product Approved 7q11.23 07q11.23 WBSCR16 Williams-Beuren syndrome chromosome region 16 2001-08-08 2016-05-11 2016-05-11 2016-05-11 81554 ENSG00000274523 OTTHUMG00000130373 uc003ubr.5 AF410455 NM_030798 "CCDS5577|CCDS64683|CCDS64684" Q96I51 12073013 MGI:2137600 RGD:1307558 +HGNC:30297 RCC2 regulator of chromosome condensation 2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 TD-60 2005-06-07 2014-11-19 55920 ENSG00000179051 OTTHUMG00000002513 uc001bam.4 NM_018715 CCDS181 Q9P258 "10819331|12919680" MGI:1919784 RGD:1309986 RCC2 609587 +HGNC:37710 RCC2P1 regulator of chromosome condensation 2 pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 2010-02-03 2014-11-19 650983 ENSG00000234385 OTTHUMG00000036287 NG_028686 PGOHUM00000233743 +HGNC:38419 RCC2P2 regulator of chromosome condensation 2 pseudogene 2 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-05-05 2014-11-19 100421075 ENSG00000237997 OTTHUMG00000036504 NG_021918 PGOHUM00000233786 +HGNC:42379 RCC2P3 regulator of chromosome condensation 2 pseudogene 3 pseudogene pseudogene Approved 7q33 07q33 2011-07-05 2011-07-05 100131932 ENSG00000233951 OTTHUMG00000155790 NG_022573 PGOHUM00000233588 +HGNC:42380 RCC2P4 regulator of chromosome condensation 2 pseudogene 4 pseudogene pseudogene Approved 3q21.3 03q21.3 2011-07-05 2014-11-18 100421090 ENSG00000249558 OTTHUMG00000159602 NG_025617 PGOHUM00000237753 +HGNC:42381 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 pseudogene pseudogene Approved 3q11.2 03q11.2 2011-07-05 2014-11-18 100131442 ENSG00000241018 OTTHUMG00000159186 NG_022256 PGOHUM00000238101 +HGNC:42382 RCC2P6 regulator of chromosome condensation 2 pseudogene 6 pseudogene pseudogene Approved 11q12.3 11q12.3 2011-07-05 2014-11-19 100421131 ENSG00000254454 OTTHUMG00000167514 NG_024523 PGOHUM00000242758 +HGNC:42383 RCC2P7 regulator of chromosome condensation 2 pseudogene 7 pseudogene pseudogene Approved 6p12.1 06p12.1 2011-07-05 2014-11-18 442221 ENSG00000220666 OTTHUMG00000014908 NG_022301 PGOHUM00000243212 +HGNC:42384 RCC2P8 regulator of chromosome condensation 2 pseudogene 8 pseudogene pseudogene Approved 4q25 04q25 2011-07-05 2011-07-05 100129714 ENSG00000250185 OTTHUMG00000161039 NG_022024 PGOHUM00000245650 +HGNC:30457 RCCD1 RCC1 domain containing 1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 MGC14386 2005-10-21 2005-10-21 2014-11-19 91433 ENSG00000166965 OTTHUMG00000171684 uc002bqk.4 NM_033544 CCDS32333 A6NED2 12477932 MGI:2444156 RGD:1309901 RCCD1 +HGNC:9930 RCD1 retinal cone dystrophy 1 phenotype phenotype only Approved 6q25-q26 06q25-q26 1994-04-27 1999-11-22 5953 180020 +HGNC:13721 RCE1 Ras converting CAAX endopeptidase 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "hRCE1|FACE-2|FACE2" "farnesylated protein-converting enzyme 2|prenyl protein-specific endoprotease 2|RCE1 homolog, prenyl protein protease|CAAX prenyl protease 2" "RCE1A|RCE1B" "RCE1 (S. Cerevisiae) homolog, prenyl protein protease|RCE1 homolog, prenyl protein peptidase (S. cerevisiae)|RCE1 homolog, prenyl protein protease (S. cerevisiae)" 2001-01-10 2001-06-29 2013-10-18 2016-10-05 9986 ENSG00000173653 OTTHUMG00000167098 uc001ojk.2 AF121951 NM_005133 CCDS8151 Q9Y256 "10085068|10373325" MGI:1336895 RGD:1309261 RCE1 605385 M79.002 objectId:2412 +HGNC:17479 RCHY1 ring finger and CHY zinc finger domain containing 1 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "CHIMP|DKFZp586C1620|PRO1996|RNF199|ARNIP|PIRH2|ZCHY" "androgen-receptor N-terminal-interacting protein|p53-induced protein with a RING-H2 domain|zinc finger, CHY-type" ZNF363 "zinc finger protein 363|ring finger and CHY zinc finger domain containing 1|ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase" Ring finger proteins 58 2002-02-15 2004-03-30 2016-01-13 2016-10-05 25898 ENSG00000163743 OTTHUMG00000130105 uc003hik.4 AF255666 NM_015436 "CCDS3567|CCDS34012|CCDS63990|CCDS63991|CCDS63992" Q96PM5 12654245 MGI:1915348 RGD:1359180 RCHY1 607680 +HGNC:17687 RCL1 RNA terminal phosphate cyclase like 1 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "RPCL1|RNAC" RNA terminal phosphate cyclase-like 1 2003-12-01 2016-03-24 2016-10-05 10171 ENSG00000120158 OTTHUMG00000019474 uc003zis.4 AJ276894 NM_005772 "CCDS6456|CCDS69565|CCDS75810" Q9Y2P8 MGI:1913275 RGD:1305320 RCL1 611405 +HGNC:9934 RCN1 reticulocalbin 1 protein-coding gene gene with protein product Approved 11p13 11p13 "Rcal|PIG20|FLJ37041" proliferation-inducing gene 20 RCN reticulocalbin 1, EF-hand calcium binding domain EF-hand domain containing 863 1997-07-25 2015-11-16 2015-11-16 5954 ENSG00000049449 OTTHUMG00000166227 uc010reb.3 D42073 NM_002901 CCDS7876 Q15293 "9192846|8586628" MGI:104559 RGD:1311292 RCN1 602735 +HGNC:39205 RCN1P1 reticulocalbin 1 pseudogene 1 pseudogene pseudogene Approved 6q14.3 06q14.3 reticulocalbin 1, EF-hand calcium binding domain pseudogene 1 2010-11-23 2015-11-16 2015-11-16 442234 ENSG00000215477 OTTHUMG00000015162 NG_022315 PGOHUM00000243283 +HGNC:39204 RCN1P2 reticulocalbin 1 pseudogene 2 pseudogene pseudogene Approved 13q14.13 13q14.13 reticulocalbin 1, EF-hand calcium binding domain pseudogene 2 2010-11-23 2015-11-16 2015-11-16 728913 ENSG00000214455 OTTHUMG00000016852 NG_006546 PGOHUM00000256721 +HGNC:9935 RCN2 reticulocalbin 2 protein-coding gene gene with protein product Approved 15q24.3 15q24.3 "ERC-55|E6BP|ERC55|TCBP49" Reticulocalbin 2, EF-hand calcium binding domain (endoplasmic reticulum calcium-binding protein, 55kD) reticulocalbin 2, EF-hand calcium binding domain EF-hand domain containing 863 1997-10-10 2015-11-16 2016-10-05 5955 ENSG00000117906 OTTHUMG00000143730 uc002bcd.4 X78669 NM_002902 "CCDS10291|CCDS61719" Q14257 "9533013|7624774" MGI:1349765 RGD:3548 RCN2 602584 +HGNC:21145 RCN3 reticulocalbin 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 RLP49 reticulocalbin 3, EF-hand calcium binding domain EF-hand domain containing 863 2003-05-20 2015-11-16 2015-11-16 57333 ENSG00000142552 OTTHUMG00000183154 uc002poj.4 AY195859 NM_020650 CCDS12771 Q96D15 MGI:1277122 RGD:1359365 RCN3 +HGNC:17441 RCOR1 REST corepressor 1 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "COREST|KIAA0071" RCOR REST corepressor Myb/SANT domain containing 532 2002-01-09 2004-04-16 2004-04-16 2016-04-25 23186 ENSG00000089902 OTTHUMG00000171778 uc001ymb.5 AF155595 NM_015156 CCDS9974 Q9UKL0 10449787 MGI:106340 RGD:7505493 RCOR1 607675 +HGNC:27455 RCOR2 REST corepressor 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 Myb/SANT domain containing 532 2004-04-16 2014-11-19 283248 ENSG00000167771 OTTHUMG00000150472 uc001nyc.3 BC010608 NM_173587 CCDS8052 Q8IZ40 12477932 MGI:1859854 RGD:1359467 RCOR2 616019 +HGNC:25594 RCOR3 REST corepressor 3 protein-coding gene gene with protein product Approved 1q32.2-q32.3 01q32.2-q32.3 FLJ10876 Myb/SANT domain containing 532 2004-04-16 2016-10-11 55758 ENSG00000117625 OTTHUMG00000036996 uc010psw.3 AK001738 NM_018254 "CCDS31016|CCDS44312|CCDS44313|CCDS44314" Q9P2K3 10718198 MGI:2441920 RGD:1593864 RCOR3 +HGNC:28310 RCSD1 RCSD domain containing 1 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "MK2S4|MGC21854|CapZIP" CapZ interacting protein 2005-05-18 2015-08-25 92241 ENSG00000198771 OTTHUMG00000035318 uc001gem.4 BC072399 NM_052862 "CCDS1263|CCDS81396" Q6JBY9 15850461 MGI:2676394 RGD:1304715 RCSD1 610579 +HGNC:9937 RCVRN recoverin protein-coding gene gene with protein product Approved 17p13.1 17p13.1 RCV1 EF-hand domain containing 863 1992-11-09 2006-09-26 2014-11-19 5957 ENSG00000109047 OTTHUMG00000130268 uc002gme.2 BC001720 NM_002903 CCDS11151 P35243 "1387789|12507501|1467959|12789533" MGI:97883 RGD:620258 RCVRN 179618 +HGNC:19689 RD3 retinal degeneration 3 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 LCA12 C1orf36 chromosome 1 open reading frame 36 2002-11-12 2006-11-13 2006-11-13 2015-08-25 343035 ENSG00000198570 OTTHUMG00000037002 uc001him.2 AY191519 NM_183059 CCDS1498 Q7Z3Z2 12914764 MGI:1921273 RGD:1593897 RD3 180040 118246 +HGNC:40912 RD3L retinal degeneration 3-like protein-coding gene gene with protein product Approved 14q32.33 14q32.33 TDRD9AS1 TDRD9 antisense 1 TDRD9-AS1 2011-11-18 2012-03-26 2012-03-26 2015-08-25 647286 ENSG00000227729 OTTHUMG00000152877 uc031qqp.1 NM_001257268 CCDS58338 P0DJH9 MGI:2675860 RGD:1305627 RD3L +HGNC:9940 RDH5 retinol dehydrogenase 5 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "HSD17B9|SDR9C5" short chain dehydrogenase/reductase family 9C, member 5 RDH1 retinol dehydrogenase 5 (11-cis/9-cis) Short chain dehydrogenase/reductase superfamily 743 1996-07-19 2016-01-15 2016-01-15 5959 ENSG00000135437 OTTHUMG00000170126 uc001shk.4 U89717 NM_002905 CCDS31829 Q92781 "9115228|8884265|19027726" MGI:1201412 RGD:1308849 Mutations of the 11-cis Retinol Dehydrogenase Gene|http://www.retina-international.org/files/sci-news/rdh5mut.htm RDH5 601617 118253 1.1.1.105 +HGNC:14423 RDH8 retinol dehydrogenase 8 (all-trans) protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "PRRDH|SDR28C2" short chain dehydrogenase/reductase family 28C, member 2 Short chain dehydrogenase/reductase superfamily 743 2001-04-27 2016-04-25 50700 ENSG00000080511 OTTHUMG00000180392 uc002mmr.5 AF229845 NM_015725 CCDS12223 Q9NYR8 "10753906|19027726" MGI:2685028 RGD:1589829 RDH8 608575 1.1.1.- +HGNC:19975 RDH10 retinol dehydrogenase 10 (all-trans) protein-coding gene gene with protein product Approved 8q21.11 08q21.11 SDR16C4 short chain dehydrogenase/reductase family 16C, member 4 Short chain dehydrogenase/reductase superfamily 743 2002-12-11 2011-09-20 157506 ENSG00000121039 OTTHUMG00000164492 uc003xzi.4 AF456765 NM_172037 CCDS6213 Q8IZV5 "12407145|19027726" MGI:1924238 RGD:727793 RDH10 607599 1.1.1.- +HGNC:51658 RDH10-AS1 RDH10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q21.11 08q21.11 2015-04-24 2015-04-24 101926926 ENSG00000250295 OTTHUMG00000164493 NR_125388 +HGNC:17964 RDH11 retinol dehydrogenase 11 (all-trans/9-cis/11-cis) protein-coding gene gene with protein product Approved 14q24.1 14q24.1 "MDT1|SDR7C1|ARSDR1" "short chain dehydrogenase/reductase family 7C, member 1|androgen-regulated short-chain dehydrogenase/reductase 1" retinol dehydrogenase 11 (all-trans and 9-cis) Short chain dehydrogenase/reductase superfamily 743 2002-12-11 2006-05-09 2015-09-07 51109 ENSG00000072042 OTTHUMG00000171196 uc001xjv.6 AF151840 NM_016026 "CCDS32104|CCDS58326" Q8TC12 "12226107|8018917|19027726" MGI:102581 RGD:1312001 RDH11 607849 444684 1.1.1.- +HGNC:19977 RDH12 retinol dehydrogenase 12 (all-trans/9-cis/11-cis) protein-coding gene gene with protein product Approved 14q24.1 14q24.1 "FLJ30273|SDR7C2|LCA13|RP53" short chain dehydrogenase/reductase family 7C, member 2 retinol dehydrogenase 12 (all-trans and 9-cis) Short chain dehydrogenase/reductase superfamily 743 2002-12-11 2006-05-09 2015-09-07 145226 ENSG00000139988 OTTHUMG00000170032 uc001xjz.5 AK054835 NM_152443 CCDS9787 Q96NR8 "12226107|19027726" MGI:1925224 RGD:1310462 RDH12 608830 118250 1.1.1.- +HGNC:19978 RDH13 retinol dehydrogenase 13 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 SDR7C3 short chain dehydrogenase/reductase family 7C, member 3 "retinol dehydrogenase 13 (all-trans and 9-cis)|retinol dehydrogenase 13 (all-trans/9-cis)" Short chain dehydrogenase/reductase superfamily 743 2002-12-11 2016-07-14 2016-07-14 112724 ENSG00000160439 OTTHUMG00000180478 uc061cvb.1 NM_138412 "CCDS42627|CCDS54320" Q8NBN7 "12226107|19027726" MGI:1918732 RGD:1304959 RDH13 1.1.1.- +HGNC:19979 RDH14 retinol dehydrogenase 14 (all-trans/9-cis/11-cis) protein-coding gene gene with protein product Approved 2p24.2 02p24.2 "PAN2|SDR7C4" short chain dehydrogenase/reductase family 7C, member 4 retinol dehydrogenase 14 (all-trans and 9-cis) Short chain dehydrogenase/reductase superfamily 743 2002-12-11 2006-05-09 2015-08-25 57665 ENSG00000240857 OTTHUMG00000090705 uc002rcx.5 AF237952 NM_020905 CCDS1693 Q9HBH5 "12226107|19027726" MGI:1920402 RGD:1565196 RDH14 616796 1.1.1.- +HGNC:29674 RDH16 retinol dehydrogenase 16 (all-trans) protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "RODH-4|SDR9C8" "microsomal NAD+ dependent retinol dehydrogenase 4|short chain dehydrogenase/reductase family 9C, member 8" retinol dehydrogenase 16 (all-trans and 13-cis) Short chain dehydrogenase/reductase superfamily 743 2005-05-23 2006-05-09 2015-09-07 8608 ENSG00000139547 OTTHUMG00000170895 uc001smi.6 NM_003708 CCDS41797 O75452 "9677409|10329026|19027726" "MGI:1195275|MGI:1201375|MGI:1860517|MGI:2143528|MGI:2678390|MGI:3583955" RGD:2318031 RDH16 +HGNC:19950 RDM1 RAD52 motif containing 1 protein-coding gene gene with protein product Approved 17q12 17q12 MGC33977 RAD52B "RAD52 homolog B (S. cerevisiae)|RAD52 motif 1" RNA binding motif containing 725 2004-02-19 2005-10-20 2014-04-10 2016-10-05 201299 ENSG00000278023 OTTHUMG00000188399 uc032gbd.3 AB080728 NM_145654 "CCDS11301|CCDS42299|CCDS54111|CCDS54108|CCDS54109|CCDS54110|CCDS59280|CCDS59281|CCDS82109" Q8NG50 15611051 MGI:1913849 RGD:1310432 RDM1 612896 +HGNC:9943 RDT entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:9944 RDX radixin protein-coding gene gene with protein product Approved 11q23 11q23 DFNB24 deafness, autosomal recessive 24 FERM domain containing 1293 1992-12-08 2014-11-19 5962 ENSG00000137710 OTTHUMG00000166574 uc001pku.4 BC020751 NM_002906 "CCDS8343|CCDS58171|CCDS58172|CCDS58173|CCDS58174" P35241 "8486357|17226784" MGI:97887 RGD:1359472 RDX 179410 159272 +HGNC:9945 RDXP1 radixin pseudogene 1 pseudogene pseudogene Approved 11p 11p 1992-12-08 2014-11-19 643244 NG_021769 +HGNC:9946 RDXP2 radixin pseudogene 2 pseudogene pseudogene Approved Xp21.3 Xp21.3 1992-12-08 2003-03-26 5964 NG_000867 8486357 +HGNC:16879 REC8 REC8 meiotic recombination protein protein-coding gene gene with protein product Approved 14q12 14q12 "Rec8p|kleisin-alpha" REC8L1 "REC8-like 1 (yeast)|REC8 homolog (yeast)" Cohesin complex 1060 2003-09-29 2007-04-03 2013-08-06 2016-01-15 9985 ENSG00000100918 OTTHUMG00000171916 uc032awb.2 AF006264 NM_005132 CCDS41932 O95072 "10207075|15935783|12759374" MGI:1929645 RGD:1309376 REC8 608193 +HGNC:25065 REC114 REC114 meiotic recombination protein protein-coding gene gene with protein product Approved 15q22 15q22 "LOC283677|FLJ27520|FLJ36860|FLJ44083|CT147" C15orf60 chromosome 15 open reading frame 60 2008-07-25 2014-05-09 2014-05-09 2014-05-09 283677 ENSG00000183324 NM_001042367 CCDS45296 Q7Z4M0 20551173 MGI:1920923 RGD:1311874 +HGNC:11345 RECK reversion inducing cysteine rich protein with kazal motifs protein-coding gene gene with protein product Approved 9p13.3 09p13.3 hRECK ST15 1998-10-30 2016-01-28 2016-01-28 8434 ENSG00000122707 OTTHUMG00000019898 uc003zyv.4 E13833 XM_017015207 CCDS6597 O95980 9789069 MGI:1855698 RGD:1308845 RECK 605227 I01.037 +HGNC:9948 RECQL RecQ like helicase protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "RecQ1|RecQL1" DNA helicase Q1-like "RecQ protein-like (DNA helicase Q1-like)|RecQ helicase-like" RecQ like helicases 1049 1994-03-25 2014-03-07 2016-02-05 2016-02-05 5965 ENSG00000004700 OTTHUMG00000169131 uc001rey.4 D37984 NM_002907 CCDS31756 P46063 "7527136|7961977" MGI:103021 RGD:1311071 RECQL 600537 +HGNC:9949 RECQL4 RecQ like helicase 4 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 RecQ4 RecQ helicase-like 4 RecQ like helicases 1049 1999-05-06 2014-03-07 2016-02-05 2016-10-12 9401 ENSG00000160957 OTTHUMG00000165178 uc033ccu.2 AB006532 NM_004260 CCDS75804 O94761 "9878247|15960976" MGI:1931028 RGD:1307732 LRG_277|http://www.lrg-sequence.org/LRG/LRG_277 RECQL4 603780 118257 +HGNC:9950 RECQL5 RecQ like helicase 5 protein-coding gene gene with protein product Approved 17q25 17q25 "RecQ5|FLJ90603" RecQ protein 5 RecQ like helicases 1049 1999-05-06 2014-03-07 2016-02-05 2016-02-05 9400 ENSG00000108469 OTTHUMG00000179795 uc060jzu.1 AB006533 NM_004259 "CCDS32735|CCDS42380|CCDS45777" O94762 9878247 MGI:2156841 RGD:1310823 RECQL5 603781 +HGNC:25786 REEP1 receptor accessory protein 1 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "FLJ13110|SPG31|Yip2a" receptor expression enhancing protein 1 C2orf23 chromosome 2 open reading frame 23 Receptor accessory proteins 717 2004-04-27 2006-02-07 2006-02-07 2016-10-12 65055 ENSG00000068615 OTTHUMG00000130205 uc002srh.5 AK023172 NM_022912 "CCDS1989|CCDS54372|CCDS54373|CCDS54374" Q9H902 "16271481|15550249" MGI:1098827 RGD:1305230 LRG_713|http://www.lrg-sequence.org/LRG/LRG_713 REEP1 609139 118260 +HGNC:17975 REEP2 receptor accessory protein 2 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "SGC32445|SPG72|Yip2d" C5orf19 chromosome 5 open reading frame 19 Receptor accessory proteins 717 2004-04-27 2006-02-07 2006-02-07 2016-10-05 51308 ENSG00000132563 OTTHUMG00000129205 uc003lcz.5 AK056193 NM_016606 "CCDS4205|CCDS64259" Q9BRK0 "16271481|15550249|24388663" MGI:2385070 RGD:1586980 REEP2 609347 403398 +HGNC:23711 REEP3 receptor accessory protein 3 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 Yip2b C10orf74 chromosome 10 open reading frame 74 Receptor accessory proteins 717 2004-02-13 2006-02-07 2006-02-07 2015-11-17 221035 ENSG00000165476 OTTHUMG00000018318 uc001jmt.3 BC057832 NM_001001330 CCDS44411 Q6NUK4 "16271481|15550249" MGI:88930 RGD:1560401 REEP3 609348 +HGNC:26176 REEP4 receptor accessory protein 4 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "FLJ22246|FLJ22277|PP432|Yip2c" C8orf20 chromosome 8 open reading frame 20 Receptor accessory proteins 717 2004-04-27 2006-02-07 2006-02-07 2015-11-17 80346 ENSG00000168476 OTTHUMG00000131491 uc003xau.2 BC013048 NM_025232 "CCDS6024|CCDS83257|CCDS83258" Q9H6H4 "16271481|15550249" MGI:1919799 RGD:1306561 REEP4 609349 +HGNC:30077 REEP5 receptor accessory protein 5 protein-coding gene gene with protein product Approved 5q22.2 05q22.2 "DP1|TB2|D5S346|Yip2e" "deleted in polyposis 1|polyposis locus protein 1|polyposis coli region hypothetical protein DP1" C5orf18 chromosome 5 open reading frame 18 Receptor accessory proteins 717 2004-07-05 2006-02-07 2006-02-07 2015-11-17 7905 ENSG00000129625 OTTHUMG00000128807 uc003kqe.2 BC000232 NM_005669 CCDS4109 Q00765 "16271481|15550249" MGI:1270152 RGD:1306047 REEP5 125265 +HGNC:30078 REEP6 receptor accessory protein 6 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "DP1L1|FLJ25383|Yip2f" "polyposis locus protein 1-like 1|deleted in polyposis 1-like 1" C19orf32 chromosome 19 open reading frame 32 Receptor accessory proteins 717 2004-07-05 2006-02-07 2006-02-08 2015-11-17 92840 ENSG00000115255 OTTHUMG00000180072 uc002ltc.4 BC008201 NM_138393 CCDS12070 Q96HR9 "16271481|15550249" MGI:1917585 RGD:1309508 REEP6 609346 +HGNC:9951 REG1A regenerating family member 1 alpha protein-coding gene gene with protein product Approved 2p12 02p12 "PSP|PTP|PSPS|PSPS1" "pancreatic stone protein|pancreatic thread protein" REG regenerating islet-derived 1 alpha (pancreatic stone protein, pancreatic thread protein) C-type lectin domain containing 1298 1992-06-05 2015-11-18 2015-11-18 5967 ENSG00000115386 OTTHUMG00000130016 uc002snz.3 NM_002909 CCDS1964 P05451 "2332435|8333731" "MGI:97895|MGI:97896" RGD:3552 REG1A 167770 I63.002 +HGNC:9952 REG1B regenerating family member 1 beta protein-coding gene gene with protein product Approved 2p12 02p12 "REGL|PSPS2|REGH|REGI-BETA" "lithostathine 1 beta|secretory pancreatic stone protein 2" regenerating islet-derived 1 beta (pancreatic stone protein, pancreatic thread protein) C-type lectin domain containing 1298 1994-07-04 2015-11-18 2015-11-18 5968 ENSG00000172023 OTTHUMG00000130019 uc002sny.3 NM_006507 CCDS1963 P48304 8110835 "MGI:97895|MGI:97896" REG1B 167771 +HGNC:9953 REG1CP regenerating family member 1 gamma, pseudogene pseudogene pseudogene Approved 2p12 02p12 RS "REGL|REG1P" "rat regenerating islet-derived-like, human homolog (pancreatic stone protein-like, pancreatic thread protein-like)|regenerating islet-derived-like, pancreatic stone protein-like, pancreatic thread protein-like (rat)|regenerating islet-derived 1 pseudogene" 1993-07-12 2015-11-18 2015-11-18 2015-11-18 5969 ENSG00000204787 OTTHUMG00000152978 NR_002714 8333731 +HGNC:8601 REG3A regenerating family member 3 alpha protein-coding gene gene with protein product Approved 2p12 02p12 "HIP|REG-III|REG3|PBCGF|PAP1" PAP "pancreatitis-associated protein|regenerating islet-derived 3 alpha" C-type lectin domain containing 1298 1993-09-20 2005-02-11 2015-11-18 2015-11-18 5068 ENSG00000172016 OTTHUMG00000130017 uc002sof.3 S51768 NM_002580 CCDS1965 Q06141 8188210 "MGI:109408|MGI:97478" RGD:3254 REG3A 167805 I63.002 +HGNC:29595 REG3G regenerating family member 3 gamma protein-coding gene gene with protein product Approved 2p12 02p12 "UNQ429|LPPM429|PAP1B" regenerating islet-derived 3 gamma C-type lectin domain containing 1298 2005-02-11 2015-11-18 2015-11-18 130120 ENSG00000143954 OTTHUMG00000130018 uc002snw.5 AY359047 NM_198448 "CCDS1962|CCDS58714" Q6UW15 12975309 MGI:109406 RGD:3256 REG3G 609933 +HGNC:22977 REG4 regenerating family member 4 protein-coding gene gene with protein product Approved 1p12 01p12 "REG-IV|RELP|GISP" "regenerating gene type IV| gastrointestinal secretory protein" regenerating islet-derived family, member 4 C-type lectin domain containing 1298 2003-09-08 2015-11-18 2016-10-05 83998 ENSG00000134193 OTTHUMG00000012175 uc001eif.4 AY007243 NM_032044 "CCDS906|CCDS53354" Q9BYZ8 "11311942|12455032" MGI:1914959 RGD:1303341 REG4 609846 I63.002 +HGNC:9954 REL REL proto-oncogene, NF-kB subunit protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "I-Rel|c-Rel" v-rel avian reticuloendotheliosis viral oncogene homolog NF-kappa B complex subunits 1254 2001-06-22 2016-04-29 2016-10-05 5966 ENSG00000162924 OTTHUMG00000129418 uc002sam.2 M11595 NM_002908 "CCDS1864|CCDS74515" Q04864 1577270 MGI:97897 RGD:1311231 REL 164910 +HGNC:9955 RELA RELA proto-oncogene, NF-kB subunit protein-coding gene gene with protein product Approved 11q13.1 11q13.1 p65 NFKB3 "nuclear factor of kappa light polypeptide gene enhancer in B-cells 3|v-rel avian reticuloendotheliosis viral oncogene homolog A" NF-kappa B complex subunits 1254 1991-11-14 2016-04-29 2016-10-05 5970 ENSG00000173039 OTTHUMG00000166566 uc001ofg.4 Z22951 NM_021975 "CCDS31609|CCDS44651|CCDS73322" Q04206 2001591 MGI:103290 RGD:727889 RELA 164014 395954 +HGNC:9956 RELB RELB proto-oncogene, NF-kB subunit protein-coding gene gene with protein product Approved 19q13.32 19q13.32 REL-B v-rel avian reticuloendotheliosis viral oncogene homolog B (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3) NF-kappa B complex subunits 1254 1995-10-02 2016-04-29 2016-04-29 5971 ENSG00000104856 OTTHUMG00000162116 uc060zvi.1 M83221 XM_005259127 CCDS46110 Q01201 1531086 MGI:103289 RGD:2321078 RELB 604758 +HGNC:27379 RELL1 RELT like 1 protein-coding gene gene with protein product Approved 4p14 04p14 RELT-like 1 2007-06-15 2016-01-28 2016-01-28 768211 ENSG00000181826 OTTHUMG00000160389 uc003gsz.3 AK025431 NM_001085400 CCDS43221 Q8IUW5 "16389068|22052202" MGI:2140767 RGD:1307468 RELL1 611212 +HGNC:26902 RELL2 RELT like 2 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 FLJ90583 C5orf16 "chromosome 5 open reading frame 16|RELT-like 2" 2004-01-08 2007-06-15 2016-01-28 2016-01-28 285613 ENSG00000164620 OTTHUMG00000129612 uc003lli.4 AK054889 NM_173828 CCDS4265 Q8NC24 "12975309|16389068" MGI:1918044 RGD:1305276 RELL2 611213 +HGNC:9957 RELN reelin protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "RL|PRO1598" 1997-07-22 2016-10-05 5649 ENSG00000189056 OTTHUMG00000157247 uc010liz.3 NM_005045 "CCDS34722|CCDS47680" P78509 9049633 MGI:103022 RGD:3553 RELN 600514 118272 +HGNC:13764 RELT RELT tumor necrosis factor receptor protein-coding gene gene with protein product Approved 11q13.2 11q13.2 FLJ14993 TNFRSF19L tumor necrosis factor receptor superfamily, member 19-like Tumor necrosis factor receptor superfamily 782 2002-02-08 2007-06-14 2007-06-14 2014-11-18 84957 ENSG00000054967 OTTHUMG00000167973 uc001otv.4 AF319553 NM_032871 CCDS8222 Q969Z4 "11313261|16547002|16950202|16389068" MGI:2443373 RGD:1305381 RELT 611211 objectId:1892 +HGNC:15922 REM1 RRAD and GEM like GTPase 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 GES GTPase GES REM RAS (RAD and GEM)-like GTP-binding RGK type GTPase family 1260 2001-06-21 2004-04-16 2016-05-04 2016-05-04 28954 ENSG00000088320 OTTHUMG00000032168 uc002wwa.5 AF152863 NM_014012 CCDS13181 O75628 "10831614|14623965|22076634" MGI:1097696 RGD:1306560 REM1 610388 +HGNC:20248 REM2 RRAD and GEM like GTPase 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 FLJ38964 RAS (RAD and GEM) like GTP binding 2 RGK type GTPase family 1260 2003-01-14 2016-05-04 2016-05-04 161253 ENSG00000139890 OTTHUMG00000170277 uc001whf.2 NM_173527 CCDS45082 Q8IYK8 10727423 MGI:2155260 RGD:69081 REM2 616955 +HGNC:9958 REN renin protein-coding gene gene with protein product Approved 1q32.1 01q32.1 1986-01-01 2016-10-05 5972 ENSG00000143839 OTTHUMG00000036059 uc001haq.3 BC047752 NM_000537 CCDS30981 P00797 MGI:97898 RGD:3554 REN 179820 138530 A01.007 objectId:2413 3.4.23.15 +HGNC:9959 RENBP renin binding protein protein-coding gene gene with protein product Approved Xq28 Xq28 "RNBP|RBP" "N-acylglucosamine 2-epimerase|GlcNAc 2-epimerase|N-acetyl-D-glucosamine 2-epimerase" renin-binding protein 1992-08-24 2001-11-28 2014-11-19 5973 ENSG00000102032 OTTHUMG00000024224 uc004fjo.3 NM_002910 CCDS14738 P51606 1618798 MGI:105940 RGD:621688 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RENBP RENBP 312420 +HGNC:9961 RENS2 Renpenning syndrome 2 phenotype phenotype only Approved Xq12-q21.31 Xq12-q21.31 MRXS9 Renpenning-like syndrome X-linked mental retardation 103 1998-01-21 2014-03-07 2014-03-07 5975 +HGNC:33748 REP15 RAB15 effector protein protein-coding gene gene with protein product Approved 12p11.22 12p11.22 RAB15EP 2009-04-20 2010-09-02 387849 ENSG00000174236 OTTHUMG00000169212 uc001rig.2 BC140921 NM_001029874 CCDS31762 Q6BDI9 16195351 MGI:1913782 RGD:1562899 REP15 610848 +HGNC:17922 REPIN1 replication initiator 1 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "RIP60|AP4|H_DJ0584D14.12|Zfp464" "replication initiation region protein (60kD)|zinc finger protein AP4|zinc finger protein 464 (RIP60)" ZNF464 zinc finger protein 464 (RIP60) Zinc fingers C2H2-type 28 2003-07-14 2003-08-08 2003-08-07 2014-11-19 29803 ENSG00000214022 OTTHUMG00000158330 uc003whc.2 AF201303 NM_014374 "CCDS43677|CCDS47745" Q9BWE0 10606657 MGI:1889817 RGD:1549707 REPIN1 471 +HGNC:15578 REPS1 RALBP1 associated Eps domain containing 1 protein-coding gene gene with protein product Approved 6q24.1 06q24.1 EF-hand domain containing 863 2001-05-29 2015-08-25 85021 ENSG00000135597 OTTHUMG00000015685 uc011edr.4 XM_005267177 "CCDS5193|CCDS47488|CCDS69212|CCDS69213" Q96D71 MGI:1196373 RGD:1307131 REPS1 614825 +HGNC:9963 REPS2 RALBP1 associated Eps domain containing 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 POB1 EF-hand domain containing 863 2000-01-18 2014-11-19 9185 ENSG00000169891 OTTHUMG00000021199 uc004cxv.1 AF010233 NM_004726 "CCDS14180|CCDS43919" Q8NFH8 "9422736|9928989" MGI:2663511 RGD:1561642 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=REPS2 REPS2 300317 +HGNC:30309 RER1 retention in endoplasmic reticulum sorting receptor 1 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) 2004-12-17 2013-10-18 2016-10-05 11079 ENSG00000157916 OTTHUMG00000001403 uc001aje.3 AF157324 XM_017000131 CCDS41232 O15258 "9309388|17668005" MGI:1915080 RGD:1306324 RER1 +HGNC:9965 RERE arginine-glutamic acid dipeptide repeats protein-coding gene gene with protein product Approved 1p36.23 01p36.23 "KIAA0458|ARP|ARG|DNB1" ATN1L arginine-glutamic acid dipeptide (RE) repeats "GATA zinc finger domain containing|Myb/SANT domain containing" "82|532" 2000-05-19 2016-04-05 2016-04-05 473 ENSG00000142599 OTTHUMG00000001765 uc001ape.4 AF016005 XM_005263464 "CCDS95|CCDS41243" Q9P2R6 "10814707|10729226" MGI:2683486 RGD:629475 RERE 605226 +HGNC:38795 REREP1Y arginine-glutamic acid dipeptide repeats pseudogene 1, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 arginine-glutamic acid dipeptide (RE) repeats pseudogene 1, Y-linked 2010-08-04 2016-06-27 2016-06-27 105377240 ENSG00000225189 OTTHUMG00000044055 XR_938667 PGOHUM00000234037 +HGNC:38796 REREP2Y arginine-glutamic acid dipeptide repeats pseudogene 2, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 arginine-glutamic acid dipeptide (RE) repeats pseudogene 2, Y-linked 2010-08-04 2016-06-27 2016-06-27 105377243 ENSG00000235014 OTTHUMG00000046126 XR_938673 PGOHUM00000233884 +HGNC:38797 REREP3 arginine-glutamic acid dipeptide repeats pseudogene 3 pseudogene pseudogene Approved 15q11.2 15q11.2 arginine-glutamic acid dipeptide (RE) repeats pseudogene 3 2010-08-04 2016-06-27 2016-06-27 646396 NR_033735 PGOHUM00000246988 +HGNC:15980 RERG RAS like estrogen regulated growth inhibitor protein-coding gene gene with protein product Approved 12p12.3 12p12.3 MGC15754 RAS-like, estrogen-regulated, growth inhibitor RAS type GTPase family 389 2001-09-21 2016-03-11 2016-10-05 85004 ENSG00000134533 OTTHUMG00000168745 uc001rct.4 AF339750 NM_032918 "CCDS8673|CCDS53753" Q96A58 11533059 MGI:2665139 RGD:1562829 RERG 612664 +HGNC:39990 RERG-AS1 RERG antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12p12.3 12p12.3 RERG antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100873980 ENSG00000255660 OTTHUMG00000168747 uc031yvj.2 "BF508473|AW197661" NR_046559 +HGNC:39991 RERG-IT1 RERG intronic transcript 1 non-coding RNA RNA, long non-coding Approved 12p12.3 12p12.3 RERG intronic transcript 1 (non-protein coding) 2011-04-20 2015-02-25 2015-02-25 100874290 ENSG00000256650 OTTHUMG00000168746 uc058lnw.1 +HGNC:26213 RERGL RERG like protein-coding gene gene with protein product Approved 12p12.3 12p12.3 FLJ22655 RERG/RAS-like RAS type GTPase family 389 2007-12-07 2016-03-11 2016-03-11 79785 ENSG00000111404 OTTHUMG00000168820 uc031yvw.2 AK026308 NM_024730 "CCDS8679|CCDS66332" Q9H628 24127187 MGI:3642998 RGD:1560090 RERGL +HGNC:33762 RESP18 regulated endocrine specific protein 18 protein-coding gene gene with protein product Approved 2q35 02q35 "regulated endocrine-specific protein 18 homolog (rat)|regulated endocrine-specific protein 18" 2010-10-05 2015-11-18 2015-11-18 389075 ENSG00000182698 OTTHUMG00000150223 uc002vlc.4 AF437883 NM_001007089 CCDS33382 Q5W5W9 "17951542|7988462" MGI:1098222 RGD:3555 RESP18 612721 +HGNC:9966 REST RE1 silencing transcription factor protein-coding gene gene with protein product Approved 4q12 04q12 "NRSF|XBR" neuron-restrictive silencer factor RE1-silencing transcription factor 1996-04-12 2016-02-29 2016-02-29 5978 ENSG00000084093 OTTHUMG00000128770 uc003hch.4 U13879 NM_005612 CCDS3509 Q13127 "7871435|7697725" MGI:104897 RGD:621069 REST 600571 449638 +HGNC:9967 RET ret proto-oncogene protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "PTC|CDHF12|RET51|CDHR16" "cadherin-related family member 16|RET receptor tyrosine kinase|rearranged during transfection" "HSCR1|MEN2A|MTC1|MEN2B" "multiple endocrine neoplasia and medullary thyroid carcinoma 1|Hirschsprung disease 1" "Cadherin related|Receptor Tyrosine Kinases" "24|321" 1990-07-15 2007-02-16 2016-10-12 5979 ENSG00000165731 OTTHUMG00000018024 uc001jal.4 BC004257 NM_020975 "CCDS7200|CCDS53525" P07949 "2687772|1611909" MGI:97902 RGD:3556 LRG_518|http://www.lrg-sequence.org/LRG/LRG_518 RET 164761 118274 objectId:2185 +HGNC:20389 RETN resistin protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "FIZZ3|ADSF|RETN1" 2003-02-03 2014-11-19 56729 ENSG00000104918 OTTHUMG00000182503 uc002mhf.2 AF205952 NM_020415 CCDS12182 Q9HD89 12050208 MGI:1888506 RGD:628781 RETN 605565 +HGNC:20388 RETNLB resistin like beta protein-coding gene gene with protein product Approved 3q13.13 03q13.13 "HXCP2|FIZZ2|RELMb" 2003-02-03 2016-10-05 84666 ENSG00000163515 OTTHUMG00000159393 uc003dxh.3 AF290873 NM_032579 CCDS2953 Q9BQ08 "10921885|12574343" MGI:1888504 RGD:1624215 RETNLB 605645 +HGNC:25991 RETSAT retinol saturase protein-coding gene gene with protein product Approved 2p11.2 02p11.2 FLJ20296 all-trans-retinol 13,14-reductase 2006-05-02 2016-05-27 2016-05-27 54884 ENSG00000042445 OTTHUMG00000154611 uc002spd.4 AK075261 NM_017750 CCDS1972 Q6NUM9 "12975309|15358783" MGI:1914692 RGD:628802 RETSAT 1.3.99.23 +HGNC:14060 REV1 REV1, DNA directed polymerase protein-coding gene gene with protein product Approved 2q11.2 02q11.2 REV1L "REV1 (yeast homolog)- like|REV1-like (yeast)|REV1 homolog (S. cerevisiae)|REV1, polymerase (DNA directed)" DNA polymerases 535 2001-01-10 2006-11-07 2015-11-06 2016-10-05 51455 ENSG00000135945 OTTHUMG00000130636 uc002tad.4 AF206019 NM_016316 "CCDS2045|CCDS42722" Q9UBZ9 10536157 MGI:1929074 RGD:1306715 REV1 606134 +HGNC:9968 REV3L REV3 like, DNA directed polymerase zeta catalytic subunit protein-coding gene gene with protein product Approved 6q21 06q21 "POLZ|REV3" polymerase, DNA, zeta "REV3 (yeast homolog)-like, catalytic subunit of DNA polymerase zeta|REV3-like, catalytic subunit of DNA polymerase zeta (yeast)|REV3-like, polymerase (DNA directed), zeta, catalytic subunit" DNA polymerases 535 1998-07-15 2015-11-06 2016-10-05 5980 ENSG00000009413 OTTHUMG00000016318 uc003puy.6 AF058701 NM_002912 "CCDS5091|CCDS69177" O60673 "9618506|9925914" MGI:1337131 RGD:1307087 REV3L 602776 438089 +HGNC:41377 REV3L-IT1 REV3L intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6q21 06q21 REV3L intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 106478974 ENSG00000229276 OTTHUMG00000046182 uc063qqz.1 +HGNC:24616 REXO1 RNA exonuclease 1 homolog protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "EloA-BP1|KIAA1138" elongin A binding protein 1 TCEB3BP1 "transcription elongation factor B polypeptide 3 binding protein 1|REX1, RNA exonuclease 1 homolog (S. cerevisiae)" Exonucleases 544 2004-01-16 2005-08-22 2016-06-22 2016-06-22 57455 ENSG00000079313 OTTHUMG00000179991 uc002lua.5 AB032964 NM_020695 CCDS32866 Q8N1G1 10574461 MGI:1914182 RGD:1309872 REXO1 609614 +HGNC:24660 REXO1L1P REX1, RNA exonuclease 1 homolog-like 1, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 GOR REXO1L1 "REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1|REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 1, pseudogene" 2005-08-22 2014-01-10 2015-07-22 2015-08-25 254958 ENSG00000205176 OTTHUMG00000164949 AF495523 NM_172239 Q8IX06 PGOHUM00000303283 +HGNC:32239 REXO1L2P REX1, RNA exonuclease 1 homolog-like 2, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 2, pseudogene 2005-10-04 2015-07-22 2015-08-25 100288527 ENSG00000276998 OTTHUMG00000188058 NR_003594 PGOHUM00000303286 +HGNC:32240 REXO1L3P REX1, RNA exonuclease 1 homolog-like 3, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 3, pseudogene 2005-10-04 2015-07-22 2015-08-25 441359 ENSG00000273567 OTTHUMG00000185912 XM_496981 PGOHUM00000303282 +HGNC:32241 REXO1L4P REX1, RNA exonuclease 1 homolog-like 4, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 4, pseudogene 2005-10-04 2015-07-22 2015-08-25 653042 ENSG00000270416 OTTHUMG00000187498 NG_007182 PGOHUM00000303288 +HGNC:32242 REXO1L5P REX1, RNA exonuclease 1 homolog-like 5, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 5, pseudogene 2005-10-04 2015-07-22 2015-08-25 441361 ENSG00000277436 OTTHUMG00000187497 XM_496983 PGOHUM00000303289 +HGNC:32243 REXO1L6P REX1, RNA exonuclease 1 homolog-like 6, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REXO1L7P "REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 7, pseudogene|REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 6, pseudogene" 2005-10-04 2015-07-22 2015-07-22 441362 ENSG00000277422 OTTHUMG00000184704 NG_016769 PGOHUM00000303290 +HGNC:35429 REXO1L8P REX1, RNA exonuclease 1 homolog-like 8, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REXO1L8 "REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 8|REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 8, pseudogene" 2008-12-17 2012-10-08 2015-07-22 2015-08-25 392242 ENSG00000270971 OTTHUMG00000184830 NG_009604.1 PGOHUM00000303281 +HGNC:44432 REXO1L9P REX1, RNA exonuclease 1 homolog-like 9, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 9, pseudogene 2012-10-08 2015-07-22 2015-08-25 100506246 ENSG00000271381 OTTHUMG00000184804 NG_009315 PGOHUM00000303285 +HGNC:44433 REXO1L10P REX1, RNA exonuclease 1 homolog-like 10, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 10, pseudogene 2012-10-08 2015-07-22 2015-08-25 100288500 ENSG00000276540 OTTHUMG00000187503 NG_028288 PGOHUM00000303284 +HGNC:44434 REXO1L11P REX1, RNA exonuclease 1 homolog-like 11, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 11, pseudogene 2012-10-08 2015-07-22 2015-08-25 100288470 ENSG00000275928 OTTHUMG00000187502 NG_028287 PGOHUM00000303612 +HGNC:44435 REXO1L12P REX1, RNA exonuclease 1 homolog-like 12, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 REX1, RNA exonuclease 1 homolog (S. cerevisiae)-like 12, pseudogene 2012-10-08 2015-07-22 2015-08-25 100289448 ENSG00000276006 OTTHUMG00000184581 NG_022425 PGOHUM00000303611 +HGNC:17851 REXO2 RNA exonuclease 2 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 "DKFZP566E144|SFN|CGI-114" REX2, RNA exonuclease 2 homolog (S. cerevisiae) Exonucleases 544 2005-08-19 2013-06-10 2015-08-25 25996 ENSG00000076043 OTTHUMG00000168271 uc058hnt.1 AF151872 NM_015523 CCDS8371 Q9Y3B8 "10851236|10810093|23741365" MGI:1888981 RGD:1304874 REXO2 607149 +HGNC:12820 REXO4 REX4 homolog, 3'-5' exonuclease protein-coding gene gene with protein product Approved 9q34.2 09q34.2 hPMC2 XPMC2H "Xenopus prevents mitotic catatrophe 2 homolog|XPMC2 prevents mitotic catastrophe 2 homolog (Xenopus laevis)|REX4, RNA exonuclease 4 homolog (S. cerevisiae)" Exonucleases 544 1997-01-20 2005-08-22 2015-07-10 2016-10-05 57109 ENSG00000148300 OTTHUMG00000020870 uc004cdm.5 AF273304 XR_001746354 "CCDS6969|CCDS65179" Q9GZR2 "9325058|21602889" MGI:2684957 RGD:1306220 REXO4 602930 +HGNC:9969 RFC1 replication factor C subunit 1 protein-coding gene gene with protein product Approved 4p14 04p14 "A1|PO-GA|RFC140|MHCBFB" "replication factor C (activator 1) 1 (145kD)|replication factor C (activator 1) 1, 145kDa" AAA ATPases 413 1994-10-14 2015-11-09 2016-10-05 5981 ENSG00000035928 OTTHUMG00000099363 uc003gtx.3 L23320 NM_002913 "CCDS3450|CCDS56329" P35251 8114700 MGI:97891 RGD:620619 RFC1 102579 +HGNC:9970 RFC2 replication factor C subunit 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "A1|RFC40" activator 1 "replication factor C (activator 1) 2 (40kD)|replication factor C (activator 1) 2, 40kDa" AAA ATPases 413 1994-10-14 2015-11-09 2015-11-09 5982 ENSG00000049541 OTTHUMG00000023239 uc003uaj.5 NM_181471 "CCDS5567|CCDS5568|CCDS75618" P35250 "1313560|7774928" MGI:1341868 RGD:621198 RFC2 600404 118283 +HGNC:9971 RFC3 replication factor C subunit 3 protein-coding gene gene with protein product Approved 13q13.2 13q13.2 "RFC38|MGC5276" "RFC, 38 kD subunit|A1 38 kDa subunit" "replication factor C (activator 1) 3 (38kD)|replication factor C (activator 1) 3, 38kDa" AAA ATPases 413 1994-10-14 2015-11-09 2015-11-09 5983 ENSG00000133119 OTTHUMG00000016715 uc001uuz.4 NM_002915 "CCDS9352|CCDS45025" P40938 7774928 MGI:1916513 RGD:1306832 RFC3 600405 +HGNC:44531 RFC3P1 replication factor C 3 pseudogene 1 pseudogene pseudogene Approved 3p22.3 03p22.3 replication factor C (activator 1) 3, 38kDa pseudogene 1 2012-11-14 2015-11-16 2015-11-16 100131711 ENSG00000236158 OTTHUMG00000155793 NG_022200 PGOHUM00000237580 +HGNC:9972 RFC4 replication factor C subunit 4 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "A1|RFC37" "A1 37 kDa subunit|activator 1 37 kDa subunit|RFC 37 kDa subunit" "replication factor C (activator 1) 4 (37kD)|replication factor C (activator 1) 4, 37kDa" AAA ATPases 413 1994-10-14 2015-11-09 2016-10-05 5984 ENSG00000163918 OTTHUMG00000156515 uc011bsc.3 NM_002916 CCDS3283 P35249 7774928 MGI:2146571 RGD:1310142 RFC4 102577 +HGNC:9973 RFC5 replication factor C subunit 5 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 RFC36 "replication factor C (activator 1) 5 (36.5kD)|replication factor C (activator 1) 5, 36.5kDa" AAA ATPases 413 1994-10-14 2015-11-09 2016-10-05 5985 ENSG00000111445 OTTHUMG00000156438 uc001twq.4 NM_007370 "CCDS9185|CCDS41843" P40937 7774928 MGI:1919401 RGD:1309280 RFC5 600407 +HGNC:50450 RFC5P1 replication factor C 5 pseudogene 1 pseudogene pseudogene Approved 9q21.2 09q21.2 replication factor C (activator 1) 5, 36.5kDa pseudogene 1 2014-04-30 2015-11-16 2015-11-16 100421549 ENSG00000233526 OTTHUMG00000020053 NG_023928 PGOHUM00000236650 +HGNC:29587 RFESD Rieske Fe-S domain containing protein-coding gene gene with protein product Approved 5q15 05q15 Rieske (Fe-S) domain containing 2006-08-24 2016-01-28 2016-01-28 317671 ENSG00000175449 OTTHUMG00000121168 uc003klg.4 BC035110 NM_173362 "CCDS4075|CCDS47248" Q8TAC1 12477932 MGI:2145198 RGD:1308284 RFESD +HGNC:39420 RFESDP1 Rieske (Fe-S) domain containing pseudogene 1 pseudogene pseudogene Approved 13q12.12 13q12.12 2011-03-30 2011-03-30 100129167 ENSG00000231650 OTTHUMG00000016554 NG_028978 PGOHUM00000248525 +HGNC:24821 RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 17q12 17q12 "rififylin|fring|RNF189|RNF34L|CARP2|CARP-2" caspase 8 and 10 associated RING protein-2 ring finger and FYVE-like domain containing Ring finger proteins 58 2005-08-16 2016-08-08 2016-08-08 117584 ENSG00000092871 OTTHUMG00000132933 uc002hio.3 AF434816 NM_057178 CCDS11286 Q8WZ73 15229288 MGI:1914588 RGD:727916 RFFL 609735 +HGNC:30324 RFK riboflavin kinase protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "FLJ11149|RIFK" 2004-05-12 2016-10-05 55312 ENSG00000135002 OTTHUMG00000020040 uc004akd.3 AK002011 NM_018339 CCDS35044 Q969G6 14580199 MGI:1914688 RGD:1549748 RFK 613010 +HGNC:39181 RFKP1 riboflavin kinase pseudogene 1 pseudogene pseudogene Approved 1q43 01q43 2010-11-16 2010-11-16 100313962 ENSG00000215802 OTTHUMG00000040502 NG_016107 PGOHUM00000244506 +HGNC:39182 RFKP2 riboflavin kinase pseudogene 2 pseudogene pseudogene Approved 3q13.2 03q13.2 2010-11-16 2010-11-16 100132753 ENSG00000239439 OTTHUMG00000159228 NG_016114 PGOHUM00000237720 +HGNC:27051 RFLNA refilin A protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "FLJ44614|Cfm2|RefilinA" FAM101A family with sequence similarity 101, member A 2006-01-16 2016-08-08 2016-08-08 2016-08-08 144347 ENSG00000178882 OTTHUMG00000168609 uc021rfy.2 NM_181709 CCDS9258 Q6ZTI6 "21709252|24436304" MGI:1920371 RGD:1588777 615927 +HGNC:28705 RFLNB refilin B protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "MGC45871|RefilinB|Cfm1" FAM101B family with sequence similarity 101, member B 2006-01-16 2016-08-08 2016-08-08 2016-10-05 359845 ENSG00000183688 OTTHUMG00000132483 uc002frj.4 NM_182705 Q8N5W9 "21709252|24436304" MGI:1923816 RGD:1359691 615928 +HGNC:9974 RFNG RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "radical fringe (Drosophila) homolog|radical fringe homolog (Drosophila)" Beta 3-glycosyltransferases 426 1997-11-07 2006-11-13 2014-11-18 5986 ENSG00000169733 OTTHUMG00000178512 uc002kdj.3 BC069034 NM_002917 CCDS32773 Q9Y644 9187150 MGI:894275 RGD:621322 RFNG 602578 2.4.1.222 +HGNC:9977 RFPL1 ret finger protein like 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 RNF78 Ring finger proteins 58 1995-12-20 2016-03-11 2016-10-05 5988 ENSG00000128250 OTTHUMG00000150516 uc003afn.3 AJ010228 NM_021026 CCDS13857 O75677 10508838 RFPL1 605968 +HGNC:9978 RFPL1S RFPL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q12.2 22q12.2 "RFPL1-AS|NCRNA00006" non-protein coding RNA 6 RFPL1-AS1 RFPL1 antisense RNA 1 (non-protein coding) 1998-11-04 2013-02-25 2012-08-15 2016-10-05 10740 ENSG00000225465 OTTHUMG00000030476 uc003afm.3 AJ010230 NR_002727 10508838 605972 +HGNC:9979 RFPL2 ret finger protein like 2 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 RNF79 Ring finger proteins 58 1998-11-04 2016-03-11 2016-04-25 10739 ENSG00000128253 OTTHUMG00000030374 uc003amg.4 AJ010231 NM_006605 "CCDS43009|CCDS46694" O75678 10508838 RFPL2 605969 +HGNC:9980 RFPL3 ret finger protein like 3 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 1998-11-04 2016-03-11 2016-10-05 10738 ENSG00000128276 OTTHUMG00000030290 uc010gwn.3 AJ010232 NM_006604 "CCDS13904|CCDS43011" O75679 10508838 RFPL3 605970 +HGNC:9981 RFPL3S RFPL3 antisense other unknown Approved 22q12.3 22q12.3 "RFPL3-AS|NCRNA00005" non-protein coding RNA 5 RFPL3-AS1 RFPL3 antisense RNA 1 1998-11-04 2013-01-25 2013-01-25 2016-10-05 10737 ENSG00000205853 OTTHUMG00000030295 uc062dnc.1 AJ010233 NR_001450 P0C7P2 10508838 605971 +HGNC:16449 RFPL4A ret finger protein like 4A protein-coding gene gene with protein product Approved 19q13.42 19q13.42 RNF210 RFPL4 ret finger protein-like 4 Ring finger proteins 58 2001-09-04 2007-01-19 2016-03-11 2016-03-11 342931 ENSG00000223638 OTTHUMG00000165449 uc010yge.3 XM_292796 CCDS46201 A6NLU0 11850190 MGI:2149590 RGD:1307409 RFPL4A 612601 +HGNC:45147 RFPL4AL1 ret finger protein like 4A like 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 ret finger protein-like 4A-like 1 2013-02-22 2016-03-11 2016-03-11 729974 ENSG00000229292 OTTHUMG00000165450 uc031rnc.2 NM_001277397 CCDS59425 F8VTS6 MGI:2149590 +HGNC:45138 RFPL4AP1 ret finger protein like 4A pseudogene 1 pseudogene pseudogene Approved 19q13.42 19q13.42 ret finger protein-like 4A pseudogene 1 2013-02-22 2016-03-11 2016-03-11 646663 ENSG00000255238 OTTHUMG00000165451 NG_006134 PGOHUM00000234799 +HGNC:45145 RFPL4AP2 ret finger protein like 4A pseudogene 2 pseudogene pseudogene Approved 8q13.2 08q13.2 2013-02-22 2016-03-11 2016-03-11 100420059 NG_026110 PGOHUM00000249702 +HGNC:45139 RFPL4AP3 ret finger protein like 4A pseudogene 3 pseudogene pseudogene Approved 4p15.2 04p15.2 2013-02-22 2016-03-11 2016-03-11 106480810 ENSG00000251220 OTTHUMG00000160258 NG_045214 PGOHUM00000245479 +HGNC:45140 RFPL4AP4 ret finger protein like 4A pseudogene 4 pseudogene pseudogene Approved 4q31.23 04q31.23 2013-02-22 2016-03-11 2016-03-11 100420036 NG_025174 PGOHUM00000245725 +HGNC:45144 RFPL4AP5 ret finger protein like 4A pseudogene 5 pseudogene pseudogene Approved 8q24.13 08q24.13 2013-02-22 2016-03-11 2016-03-11 100420058 ENSG00000248720 OTTHUMG00000160498 NG_026072 PGOHUM00000249503 +HGNC:45142 RFPL4AP6 ret finger protein like 4A pseudogene 6 pseudogene pseudogene Approved 22q12.2 22q12.2 2013-02-22 2016-03-11 2016-08-22 100130079 ENSG00000278292 OTTHUMG00000188040 NG_022877 PGOHUM00000297733 +HGNC:45143 RFPL4AP7 ret finger protein like 4A pseudogene 7 pseudogene pseudogene Approved 8q11.21 08q11.21 2013-02-22 2016-03-11 2016-03-11 100420055 ENSG00000254268 OTTHUMG00000164209 NG_026025 PGOHUM00000249335 +HGNC:33264 RFPL4B ret finger protein like 4B protein-coding gene gene with protein product Approved 6q21 06q21 RNF211 Ring finger proteins 58 2007-01-19 2016-03-11 2016-03-11 442247 ENSG00000251258 OTTHUMG00000015390 uc003pvx.1 AK122906 NM_001013734 CCDS34515 Q6ZWI9 MGI:2684908 RGD:2323304 RFPL4B +HGNC:30220 RFT1 RFT1 homolog protein-coding gene gene with protein product Approved 3p21.1 03p21.1 CDG1N congenital disorder of glycosylation 1N "RFT1, requiring fifty three 1 homolog (S. cerevisiae)|RFT1 homolog (S. cerevisiae)" 2005-01-19 2015-07-10 2015-07-10 91869 ENSG00000163933 OTTHUMG00000074035 uc003dgj.4 AJ318099 NM_052859 CCDS2869 Q96AA3 "12477932|18313027" MGI:3607791 RGD:1562654 RFT1 611908 244547 +HGNC:30278 RFTN1 raftlin, lipid raft linker 1 protein-coding gene gene with protein product Approved 3p24.3 03p24.3 "MIG2|KIAA0084|FLJ23866|Raftlin" raft-linking protein 2006-09-28 2014-11-19 23180 ENSG00000131378 OTTHUMG00000156973 uc003cay.4 D42043 NM_015150 CCDS33712 Q14699 "7788527|12805216" MGI:1923688 RGD:1563347 RFTN1 +HGNC:23971 RFTN1P1 raftlin, lipid raft linker 1 pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-04-09 2015-02-09 360015 ENSG00000234795 OTTHUMG00000041013 NG_002933 12815422 PGOHUM00000305431 +HGNC:26402 RFTN2 raftlin family member 2 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "FLJ30574|Raftlin-2" C2orf11 chromosome 2 open reading frame 11 2003-12-19 2006-09-28 2006-09-28 2014-11-19 130132 ENSG00000162944 OTTHUMG00000132746 uc002uuo.5 AK055136 NM_144629 CCDS2323 Q52LD8 MGI:1921263 RGD:1307304 RFTN2 +HGNC:17440 RFWD2 ring finger and WD repeat domain 2 protein-coding gene gene with protein product Approved 1q25.1-q25.2 01q25.1-q25.2 "FLJ10416|COP1|RNF200" constitutive photomorphogenic protein 1 (Arabidopsis) "ring finger and WD repeat domain 2|ring finger and WD repeat domain 2, E3 ubiquitin protein ligase" "Ring finger proteins|WD repeat domain containing" "58|362" 2005-01-13 2016-04-01 2016-10-11 64326 ENSG00000143207 OTTHUMG00000034986 uc001gku.3 AK001278 NM_022457 "CCDS30944|CCDS44279" Q8NHY2 10395541 MGI:1347046 RGD:1304773 RFWD2 608067 +HGNC:31900 RFWD2P1 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase pseudogene 1 pseudogene pseudogene Approved 18p11.23 18p11.23 RFWD2P "ring finger and WD repeat domain 2 pseudogene|ring finger and WD repeat domain 2 pseudogene 1" 2005-01-13 2010-03-05 2012-02-23 2014-11-19 729391 ENSG00000266613 OTTHUMG00000178931 NG_016737 PGOHUM00000234981 +HGNC:25539 RFWD3 ring finger and WD repeat domain 3 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "FLJ10520|RNF201" "Ring finger proteins|WD repeat domain containing" "58|362" 2005-01-13 2015-08-25 55159 ENSG00000168411 OTTHUMG00000177368 uc002fda.4 AK001382 NM_018124 CCDS32486 Q6PCD5 21504906 MGI:2384584 RGD:1305243 RFWD3 614151 +HGNC:9982 RFX1 regulatory factor X1 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 EF-C "trans-acting regulatory factor 1|enhancer factor C|MHC class II regulatory factor RFX" regulatory factor X, 1 (influences HLA class II expression) Regulatory factor X family 1153 1991-11-06 2015-11-30 2015-11-30 5989 ENSG00000132005 OTTHUMG00000181979 uc002mxv.4 NM_002918 CCDS12301 P22670 "1505960|8289803" MGI:105982 RGD:1306574 RFX1 600006 +HGNC:9983 RFX2 regulatory factor X2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ14226 "trans-acting regulatory factor 2|DNA binding protein RFX2|HLA class II regulatory factor RFX2" regulatory factor X, 2 (influences HLA class II expression) Regulatory factor X family 1153 1991-11-06 2015-11-30 2015-11-30 5990 ENSG00000087903 OTTHUMG00000180711 uc002meb.4 NM_000635 "CCDS12157|CCDS12158" P48378 1505960 MGI:106583 RGD:1588579 RFX2 142765 +HGNC:9984 RFX3 regulatory factor X3 protein-coding gene gene with protein product Approved 9p24.2 09p24.2 regulatory factor X, 3 (influences HLA class II expression) Regulatory factor X family 1153 1996-08-16 2015-11-30 2015-11-30 5991 ENSG00000080298 OTTHUMG00000019456 uc010mhd.5 AI811824 NM_002919 "CCDS6449|CCDS6450|CCDS75809" P48380 8289803 MGI:106582 RGD:1307779 RFX3 601337 +HGNC:51197 RFX3-AS1 RFX3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p24.2 09p24.2 2014-08-01 2014-08-01 101929302 ENSG00000232104 OTTHUMG00000019457 BG720696 NR_121586 +HGNC:9985 RFX4 regulatory factor X4 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 regulatory factor X, 4 (influences HLA class II expression) Regulatory factor X family 1153 1997-07-11 2015-11-30 2016-10-05 5992 ENSG00000111783 OTTHUMG00000169173 uc001tlr.4 AB044245 NM_032491 "CCDS9106|CCDS9108|CCDS55880" Q33E94 "8600444|11682486" MGI:1918387 RGD:1562092 RFX4 603958 +HGNC:9986 RFX5 regulatory factor X5 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 regulatory factor X, 5 (influences HLA class II expression) Regulatory factor X family 1153 1997-07-11 2015-11-30 2016-10-12 5993 ENSG00000143390 OTTHUMG00000012495 uc001exw.2 NM_000449 CCDS994 P48382 9401005 MGI:1858421 RGD:1311677 "RFX5base: Mutation registry for MHCII promoter X box regulatory factor 5 deficiency|http://structure.bmc.lu.se/idbase/RFX5base/|LRG_101|http://www.lrg-sequence.org/LRG/LRG_101" RFX5 601863 118286 +HGNC:21478 RFX6 regulatory factor X6 protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "MGC33442|dJ955L16.1" DNA-binding protein RFX6 RFXDC1 "regulatory factor X domain containing 1|regulatory factor X, 6" Regulatory factor X family 1153 2003-06-16 2008-08-04 2015-11-30 2016-10-05 222546 ENSG00000185002 OTTHUMG00000015449 uc003pxm.4 BC039248 NM_173560 CCDS5113 Q8HWS3 MGI:2445208 RGD:1307491 RFX6 612659 299156 +HGNC:25777 RFX7 regulatory factor X7 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 FLJ12994 RFXDC2 "regulatory factor X domain containing 2|regulatory factor X, 7" Regulatory factor X family 1153 2005-07-25 2008-08-04 2015-11-30 2015-11-30 64864 ENSG00000181827 OTTHUMG00000172508 uc059jng.1 NM_022841 Q2KHR2 MGI:2442675 RGD:1308795 RFX7 612660 +HGNC:37253 RFX8 RFX family member 8, lacking RFX DNA binding domain protein-coding gene gene with protein product Approved 2q11.2 02q11.2 FLJ42986 "regulatory factor X, 8|RFX gene family member 8, lacking RFX DNA binding domain" Regulatory factor X family 1153 2009-10-02 2012-11-15 2012-11-15 731220 ENSG00000196460 OTTHUMG00000130693 uc010yvx.2 AK124976 NM_001145664 CCDS46376 Q6ZV50 MGI:3588206 RGD:1560724 RFX8 +HGNC:9987 RFXANK regulatory factor X associated ankyrin containing protein protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "BLS|RFX-B|ANKRA1|F14150_1|MGC138628" "ankyrin repeat-containing regulatory factor X-associated protein|regulatory factor X subunit B|RFX-Bdelta4|DNA-binding protein RFXANK" regulatory factor X-associated ankyrin-containing protein Ankyrin repeat domain containing 403 1998-11-19 2015-11-30 2016-10-12 8625 ENSG00000064490 OTTHUMG00000169224 uc002nls.4 AF094760 NM_003721 "CCDS12395|CCDS12396|CCDS62611" O14593 "9806546|10072068" MGI:1333865 RGD:1311390 "RFXANKbase: Mutation registry for Ankyrin repeat containing regulatory factor X-associated protein deficiency|http://structure.bmc.lu.se/idbase/RFXANKbase/|LRG_102|http://www.lrg-sequence.org/LRG/LRG_102" RFXANK 603200 118288 +HGNC:9988 RFXAP regulatory factor X associated protein protein-coding gene gene with protein product Approved 13q13.3 13q13.3 regulatory factor X-associated protein 1997-11-05 2015-11-30 2016-10-12 5994 ENSG00000133111 OTTHUMG00000016738 uc001uvu.2 Y12812 NM_000538 CCDS9359 O00287 9118943 MGI:2180854 RGD:9303218 "RFXAPbase: Mutation registry for Regulatory factor X-associated protein deficiency|http://structure.bmc.lu.se/idbase/RFXAPbase/|LRG_103|http://www.lrg-sequence.org/LRG/LRG_103" RFXAP 601861 118293 +HGNC:29245 RGAG1 retrotransposon gag domain containing 1 protein-coding gene gene with protein product Approved Xq23 Xq23 "KIAA1318|Mart9|Mar9" 2004-08-27 2014-11-19 57529 ENSG00000243978 OTTHUMG00000022196 uc004eor.2 AY121804 NM_020769 CCDS14552 Q8NET4 "10718198|15716091|16093683" MGI:2685231 RGD:6486824 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RGAG1 RGAG1 300965 +HGNC:29430 RGAG4 retrotransposon gag domain containing 4 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "KIAA2001|Mar5|Mart5" 2004-08-27 2014-11-18 340526 ENSG00000242732 OTTHUMG00000021808 uc064zwl.1 AB082532 NM_001024455 CCDS55446 Q5HYW3 "12056414|15716091|16093683" MGI:3045324 RGD:6490575 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RGAG4 RGAG4 +HGNC:20369 RGCC regulator of cell cycle protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "bA157L14.2|RGC-32|RGC32" response gene to complement 32 C13orf15 chromosome 13 open reading frame 15 2004-04-16 2012-02-20 2012-02-20 2014-11-19 28984 ENSG00000102760 OTTHUMG00000016796 uc001uyi.3 AF036549 NM_014059 CCDS41880 Q9H4X1 "17146433|19158077|19652095" MGI:1913464 RGD:619721 610077 +HGNC:30281 RGL1 ral guanine nucleotide dissociation stimulator like 1 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 RGL 2004-03-11 2016-03-14 2016-10-05 23179 ENSG00000143344 OTTHUMG00000035328 uc001gqm.4 AF186780 NM_015149 "CCDS1359|CCDS72992" Q9NZL6 "10760592|10231032" MGI:107484 RGD:1308947 RGL1 605667 +HGNC:9769 RGL2 ral guanine nucleotide dissociation stimulator like 2 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "KE1.5|HKE1.5" RAB2L RAB2, member RAS oncogene family-like 1996-03-12 2004-06-16 2016-03-14 2016-10-05 5863 ENSG00000237441 OTTHUMG00000031072 uc011jao.3 XM_011514785 CCDS4774 O15211 8976381 MGI:107483 RGD:1302985 RGL2 602306 +HGNC:30282 RGL3 ral guanine nucleotide dissociation stimulator like 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ32585 2004-03-11 2016-03-14 2016-03-14 57139 ENSG00000205517 OTTHUMG00000172898 uc002mrp.3 BC014426 XM_290867 "CCDS32910|CCDS54221" Q3MIN7 10869344 MGI:1918996 RGD:1309756 RGL3 616743 +HGNC:31911 RGL4 ral guanine nucleotide dissociation stimulator like 4 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 Rgr RalGDS related oncogene 2008-02-22 2016-03-14 2016-03-14 266747 ENSG00000159496 OTTHUMG00000150711 uc002zxn.4 NM_153615 CCDS13811 Q8IZJ4 "9178890|10851075" RGL4 612214 +HGNC:30308 RGMA repulsive guidance molecule family member a protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "RGM|RGMa" RGM domain family, member A 2004-02-04 2013-11-06 2014-11-18 56963 ENSG00000182175 OTTHUMG00000171781 uc002bss.3 AL390083 NM_020211 "CCDS45357|CCDS53973|CCDS53974" Q96B86 15975920 MGI:2679262 RGD:1311983 RGMA 607362 +HGNC:26896 RGMB repulsive guidance molecule family member b protein-coding gene gene with protein product Approved 5q15 05q15 "FLJ90406|DRAGON" RGM domain family, member B 2004-02-04 2013-11-06 2016-10-05 285704 ENSG00000174136 OTTHUMG00000162745 uc003knc.3 AK074887 NM_173670 CCDS47251 Q6NW40 19324014 MGI:1916049 RGD:1595392 RGMB 612687 +HGNC:48666 RGMB-AS1 RGMB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q15 05q15 Long non-coding RNAs 788 2013-06-04 2015-07-31 503569 ENSG00000246763 OTTHUMG00000162743 NR_033932 26055877 +HGNC:9989 RGN regucalcin protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "SMP30|RC" "senescence marker protein-30|gluconolactonase" regucalcin (senescence marker protein-30) 1999-02-03 2013-04-26 2015-08-25 9104 ENSG00000130988 OTTHUMG00000021435 uc004dgz.2 D31815 NM_004683 "CCDS14272|CCDS75968" Q15493 7548213 MGI:108024 RGD:3560 RGN 300212 3.1.1.17 +HGNC:21965 RGP1 RGP1 homolog, RAB6A GEF complex partner 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 KIAA0258 "KIAA0258|RGP1 retrograde golgi transport homolog (S. cerevisiae)" 2003-11-24 2007-10-18 2015-07-22 2016-04-25 9827 ENSG00000107185 OTTHUMG00000019873 uc011lpf.3 D87447 NM_014785 CCDS47964 Q92546 23091056 MGI:1915956 RGD:1311757 RGP1 615742 +HGNC:32414 RGPD1 RANBP2-like and GRIP domain containing 1 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 RGP1 Tetratricopeptide repeat domain containing 769 2005-12-15 2016-04-25 400966 ENSG00000187627 OTTHUMG00000153248 uc021vkh.2 NM_001024457 CCDS46358 P0DJD0 "15710750|15815621" MGI:894323 RGPD1 612704 +HGNC:32415 RGPD2 RANBP2-like and GRIP domain containing 2 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "RGP2|RANBP2L2" Tetratricopeptide repeat domain containing 769 2005-12-15 2016-04-25 729857 ENSG00000185304 OTTHUMG00000153276 uc010fhc.3 NM_001078170 CCDS42710 P0DJD1 "15710750|15815621" MGI:894323 RGPD2 612705 +HGNC:32416 RGPD3 RANBP2-like and GRIP domain containing 3 protein-coding gene gene with protein product Approved 2q12.2 02q12.2 RGP3 Tetratricopeptide repeat domain containing 769 2005-12-15 2015-09-07 653489 ENSG00000153165 OTTHUMG00000153182 uc010ywi.2 XM_929931 CCDS46379 A6NKT7 "15710750|15815621" MGI:894323 RGPD3 612706 +HGNC:32417 RGPD4 RANBP2-like and GRIP domain containing 4 protein-coding gene gene with protein product Approved 2q12.3 02q12.3 "RGP4|DKFZp686P0288" Tetratricopeptide repeat domain containing 769 2005-12-15 2015-09-07 285190 ENSG00000196862 OTTHUMG00000153208 uc010ywk.3 BX537861 XM_496581 CCDS46381 Q7Z3J3 "15710750|15815621" MGI:894323 RGPD4 612707 +HGNC:49273 RGPD4-AS1 RGPD4 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 2q12.3 02q12.3 2013-10-15 2013-10-15 729121 ENSG00000230651 OTTHUMG00000153314 NR_024439 +HGNC:32418 RGPD5 RANBP2-like and GRIP domain containing 5 protein-coding gene gene with protein product Approved 2q13 02q13 "RGP5|BS-63|DKFZp686I1842" Tetratricopeptide repeat domain containing 769 2005-12-15 2015-09-07 84220 ENSG00000015568 OTTHUMG00000130985 uc061mtq.1 U64675 NM_005054 "CCDS2082|CCDS2083" Q99666 "15710750|15815621" MGI:894323 RGPD5 612708 +HGNC:32419 RGPD6 RANBP2-like and GRIP domain containing 6 protein-coding gene gene with protein product Approved 2q13 02q13 RGP6 Tetratricopeptide repeat domain containing 769 2005-12-15 2015-09-07 729540 ENSG00000183054 OTTHUMG00000153196 uc061mvo.1 AK056675 NM_001123363 "CCDS46388|CCDS42729" Q99666 "15710750|15815621|9480752" MGI:894323 RGPD6 612709 +HGNC:9849 RGPD8 RANBP2-like and GRIP domain containing 8 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 RanBP2alpha RANBP2L1 RAN binding protein 2-like 1 Tetratricopeptide repeat domain containing 769 1998-05-01 2005-12-20 2005-12-20 2016-10-05 727851 ENSG00000169629 OTTHUMG00000153289 uc002ths.3 AF012086 XM_001722279 CCDS46394 O14715 9480752 MGI:894323 RGPD8 602752 +HGNC:9990 RGR retinal G protein coupled receptor protein-coding gene gene with protein product Approved 10q23.1 10q23.1 RP44 RGR-opsin Opsin receptors 215 1995-11-28 2016-10-05 5995 ENSG00000148604 OTTHUMG00000018636 uc001kdd.2 BC011349 NM_002921 "CCDS7374|CCDS41543" P47804 8641686 MGI:1929473 RGD:1309174 Mutations of the RPE-Retinal G-Protein-Coupled Receptor|http://www.retina-international.org/files/sci-news/rgrmut.htm RGR 600342 118295 +HGNC:9991 RGS1 regulator of G-protein signaling 1 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 "1R20|IR20|BL34" IER1 regulator of G-protein signalling 1 Regulators of G-protein signaling 720 1995-11-27 2007-08-14 2016-10-05 5996 ENSG00000090104 OTTHUMG00000035598 uc001gsi.2 AF493925 NM_002922 CCDS1375 Q08116 "8241276|8602223" MGI:1354694 RGD:3561 RGS1 600323 objectId:2804 +HGNC:9998 RGS2 regulator of G-protein signaling 2 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 G0S8 "regulator of G-protein signalling 2, 24kD|regulator of G-protein signalling 2, 24kDa|regulator of G-protein signaling 2, 24kDa" "Endogenous ligands|Regulators of G-protein signaling" "542|720" 1994-11-01 2014-06-19 2016-10-05 5997 ENSG00000116741 OTTHUMG00000035600 uc001gsl.4 L13463 NM_002923 CCDS1377 P41220 8179820 MGI:1098271 RGD:621665 RGS2 600861 objectId:2808 +HGNC:9999 RGS3 regulator of G-protein signaling 3 protein-coding gene gene with protein product Approved 9q32 09q32 "C2PA|FLJ20370|PDZ-RGS3" regulator of G-protein signalling 3 "Regulators of G-protein signaling|C2 domain containing|PDZ domain containing" "720|823|1220" 1997-06-09 2007-08-14 2014-11-19 5998 ENSG00000138835 OTTHUMG00000021048 uc004bhq.5 AF006610 NM_017790 "CCDS6797|CCDS6798|CCDS35113|CCDS35114|CCDS43869|CCDS65111" P49796 "8602223|11034339" MGI:1354734 RGD:3566 RGS3 602189 objectId:2810 +HGNC:10000 RGS4 regulator of G-protein signaling 4 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 SCZD9 "regulator of G-protein signalling 4|schizophrenia disorder 9" Regulators of G-protein signaling 720 1997-06-09 2007-08-14 2014-11-18 5999 ENSG00000117152 OTTHUMG00000034417 uc009wuy.4 BC051869 NM_005613 "CCDS1243|CCDS44270|CCDS44271|CCDS44272" P49798 "8602223|8756726" MGI:108409 RGD:3567 RGS4 602516 objectId:2811 +HGNC:10001 RGS5 regulator of G-protein signaling 5 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 regulator of G-protein signalling 5 Regulators of G-protein signaling 720 1998-10-12 2007-08-14 2016-10-05 8490 ENSG00000143248 OTTHUMG00000034441 uc001gcn.4 AF030108 NM_003617 "CCDS1244|CCDS55652|CCDS58041" O15539 9747037 MGI:1098434 RGD:3568 RGS5 603276 objectId:2812 +HGNC:10002 RGS6 regulator of G-protein signaling 6 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 regulator of G-protein signalling 6 Regulators of G-protein signaling 720 1999-05-17 2007-08-14 2015-08-25 9628 ENSG00000182732 OTTHUMG00000171340 uc001xmx.5 AF073920 NM_001204416 "CCDS9808|CCDS55924|CCDS73655" P49758 "10083744|14734556" MGI:1354730 RGD:3569 RGS6 603894 objectId:2815 +HGNC:10003 RGS7 regulator of G-protein signaling 7 protein-coding gene gene with protein product Approved 1q43 01q43 regulator of G-protein signalling 7 Regulators of G-protein signaling 720 1997-03-19 2007-08-14 2014-11-19 6000 ENSG00000182901 OTTHUMG00000040107 uc001hyv.4 BC022009 NM_002924 "CCDS31071|CCDS60457|CCDS60458|CCDS60459" P49802 8548815 MGI:1346089 RGD:3570 RGS7 602517 objectId:2816 +HGNC:23271 RGS7BP regulator of G-protein signaling 7 binding protein protein-coding gene gene with protein product Approved 5q12.3 05q12.3 R7BP regulator of G-protein signalling 7 binding protein 2006-10-05 2007-08-14 2015-08-25 401190 ENSG00000186479 OTTHUMG00000162293 uc003jtj.5 BX640900 NM_001029875 CCDS34170 Q6MZT1 15632198 MGI:106334 RGD:1309360 RGS7BP 610890 +HGNC:16810 RGS8 regulator of G-protein signaling 8 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "MGC119067|MGC119068|MGC119069" regulator of G-protein signalling 8 Regulators of G-protein signaling 720 2001-10-08 2007-08-14 2016-10-05 85397 ENSG00000135824 OTTHUMG00000035219 uc001gpn.2 AF297015 NM_033345 "CCDS1349|CCDS41443" P57771 11318611 MGI:108408 RGD:3571 RGS8 607189 objectId:2813 +HGNC:10004 RGS9 regulator of G-protein signaling 9 protein-coding gene gene with protein product Approved 17q24.1 17q24.1 "PERRS|RGS9L|MGC26458|MGC111763" "regulator of G protein signalling 9|regulator of G protein signalling 9L|regulator of G-protein signaling 9L" regulator of G-protein signalling 9 Regulators of G-protein signaling 720 1998-12-15 2007-08-14 2015-11-03 8787 ENSG00000108370 OTTHUMG00000179349 uc002jfe.4 AF071476 NM_003835 "CCDS42373|CCDS45764" O75916 9765512 MGI:1338824 RGD:3572 RGS9 604067 118299 objectId:2817 +HGNC:30304 RGS9BP regulator of G-protein signaling 9 binding protein protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "FLJ45744|PERRS|R9AP|RGS9" regulator of G protein signalling 9 binding protein 2006-10-05 2015-11-27 2015-11-27 388531 ENSG00000186326 OTTHUMG00000180227 uc002ntp.1 AW302149 NM_207391 CCDS12424 Q6ZS82 "12119397|8889548" MGI:2384418 RGD:1561747 RGS9BP 607814 118301 +HGNC:9992 RGS10 regulator of G-protein signaling 10 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 regulator of G-protein signalling 10 Regulators of G-protein signaling 720 1998-03-17 2007-08-14 2016-10-05 6001 ENSG00000148908 OTTHUMG00000019150 uc001leg.4 AF045229 NM_002925 "CCDS31294|CCDS41572" O43665 8774883 MGI:1915115 RGD:3562 RGS10 602856 objectId:2818 +HGNC:9993 RGS11 regulator of G-protein signaling 11 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 regulator of G-protein signalling 11 Regulators of G-protein signaling 720 1998-12-15 2007-08-14 2015-08-25 8786 ENSG00000076344 OTTHUMG00000064893 uc002cgj.3 AF035153 XM_011522719 "CCDS10403|CCDS42088|CCDS66884" O94810 9789084 MGI:1354739 RGD:3563 RGS11 603895 objectId:2814 +HGNC:9994 RGS12 regulator of G-protein signaling 12 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 regulator of G-protein signalling 12 "Regulators of G-protein signaling|PDZ domain containing" "720|1220" 1998-07-24 2007-08-14 2014-11-18 6002 ENSG00000159788 OTTHUMG00000090277 uc003ggw.4 AF035152 NM_002926 "CCDS3366|CCDS3367|CCDS3368" O14924 9651375 MGI:1918979 RGD:3564 RGS12 602512 objectId:2819 +HGNC:9995 RGS13 regulator of G-protein signaling 13 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 regulator of G-protein signalling 13 Regulators of G-protein signaling 720 1998-04-01 2007-08-14 2014-11-19 6003 ENSG00000127074 OTTHUMG00000035601 uc001gsk.4 AF030107 NM_002927 CCDS1376 O14921 11875076 MGI:2180585 RGD:1562103 RGS13 607190 objectId:2805 +HGNC:9996 RGS14 regulator of G-protein signaling 14 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 regulator of G-protein signalling 14 Regulators of G-protein signaling 720 1999-07-06 2007-08-14 2015-08-25 10636 ENSG00000169220 OTTHUMG00000163324 uc003mgf.4 AF037195 NM_006480 CCDS43405 O43566 MGI:1859709 RGD:620003 RGS14 602513 objectId:2820 +HGNC:9997 RGS16 regulator of G-protein signaling 16 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "A28-RGS14|RGS-r" regulator of G-protein signalling 16 Regulators of G-protein signaling 720 1998-03-17 2007-08-14 2016-10-05 6004 ENSG00000143333 OTTHUMG00000035212 uc001gpl.5 U70426 NM_002928 CCDS1348 O15492 9469939 MGI:108407 RGD:1589741 RGS16 602514 objectId:2806 +HGNC:14088 RGS17 regulator of G-protein signaling 17 protein-coding gene gene with protein product Approved 6q25.2 06q25.2 "RGSZ2|RGS-17" regulator of G-protein signalling 17 Regulators of G-protein signaling 720 2000-11-29 2007-08-14 2015-02-16 26575 ENSG00000091844 OTTHUMG00000015858 uc003qpm.4 AF202257 XM_017010733 CCDS5244 Q9UGC6 10419452 MGI:1927469 RGD:1305515 RGS17 607191 objectId:2801 +HGNC:39729 RGS17P1 regulator of G-protein signaling 17 pseudogene 1 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-03-24 2011-03-24 100128628 ENSG00000229473 OTTHUMG00000016782 NG_011456 PGOHUM00000248378 +HGNC:14261 RGS18 regulator of G-protein signaling 18 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 RGS13 regulator of G-protein signalling 18 Regulators of G-protein signaling 720 2000-12-15 2007-08-14 2014-11-19 64407 ENSG00000150681 OTTHUMG00000035592 uc001gsg.4 AF268036 NM_130782 CCDS1374 Q9NS28 11042171 MGI:1927498 RGD:1306522 RGS18 607192 objectId:2807 +HGNC:13735 RGS19 regulator of G-protein signaling 19 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "GAIP|RGSGAIP" regulator of G-protein signalling 19 Regulators of G-protein signaling 720 2001-01-10 2007-08-14 2014-11-19 10287 ENSG00000171700 OTTHUMG00000033024 uc002yib.5 X91809 NM_005873 CCDS13555 P49795 8524874 MGI:1915153 RGD:629471 RGS19 605071 objectId:2802 +HGNC:14600 RGS20 regulator of G-protein signaling 20 protein-coding gene gene with protein product Approved 8q11.23 08q11.23 "RGSZ1|ZGAP1" regulator of G-protein signalling 20 Regulators of G-protein signaling 720 2001-02-09 2007-08-14 2015-09-07 8601 ENSG00000147509 OTTHUMG00000164750 uc003xrp.5 AF074979 XM_011517622 "CCDS6155|CCDS6156|CCDS69482" O76081 "9748279|9748280" MGI:1929866 RGD:1586146 RGS20 607193 objectId:2803 +HGNC:26839 RGS21 regulator of G-protein signaling 21 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 regulator of G-protein signalling 21 Regulators of G-protein signaling 720 2004-06-28 2007-08-14 2015-09-07 431704 ENSG00000253148 OTTHUMG00000035594 uc001gsh.4 AY643711 NM_001039152 CCDS41448 Q2M5E4 15066150 MGI:3645243 RGD:2320695 RGS21 612407 objectId:2809 +HGNC:24499 RGS22 regulator of G-protein signaling 22 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 "DKFZP434I092|PRTD-NY2|CT145" regulator of G-protein signalling 22 Regulators of G-protein signaling 720 2005-02-23 2007-08-14 2015-08-25 26166 ENSG00000132554 OTTHUMG00000164802 uc003yjb.2 AY009106 NM_015668 "CCDS43758|CCDS69521|CCDS75775" Q8NE09 MGI:3613651 RGD:1565493 RGS22 615650 +HGNC:18636 RGSL1 regulator of G-protein signaling like 1 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 RGSL2 "regulator of G-protein signalling like 1|regulator of G-protein signaling like 2|regulator of G-protein signalling like 2" 2003-12-05 2007-08-14 2016-10-05 353299 ENSG00000121446 OTTHUMG00000035217 uc009wxw.5 AF510428 NM_181572 CCDS58049 A5PLK6 12801632 MGI:2685048 RGD:1584051 RGSL1 611012 +HGNC:10006 RHAG Rh-associated glycoprotein protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "RH50A|CD241|SLC42A1" Rhesus blood group-associated glycoprotein "Blood group antigens|CD molecules|Solute carriers" "454|471|752" 1993-11-30 2006-02-23 2016-10-12 6005 ENSG00000112077 OTTHUMG00000016377 uc003ozk.5 NM_000324 CCDS4927 Q02094 9479501 MGI:1202713 RGD:61871 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_822|http://www.lrg-sequence.org/LRG/LRG_822" RHAG 180297 SLC42A1 118307 objectId:1198 CD241 +HGNC:23081 RHBDD1 rhomboid domain containing 1 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 DKFZp547E052 Rhomboid family 926 2006-02-22 2014-11-19 84236 ENSG00000144468 OTTHUMG00000133178 uc002voi.4 AK074258 XR_001738981 CCDS2464 Q8TEB9 12838346 MGI:1924117 RGD:1306477 RHBDD1 S54.008 +HGNC:23082 RHBDD2 rhomboid domain containing 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 NPD007 RHBDL7 rhomboid, veinlet-like 7 (Drosophila) Rhomboid family 926 2004-10-20 2006-02-22 2006-02-22 2016-10-05 57414 ENSG00000005486 OTTHUMG00000156435 uc064emv.1 AF226732 NM_020684 "CCDS43602|CCDS43603" Q6NTF9 12838346 MGI:1915612 RGD:1308231 RHBDD2 615203 S54.955 +HGNC:1308 RHBDD3 rhomboid domain containing 3 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 PTAG C22orf3 chromosome 22 open reading frame 3 Rhomboid family 926 2000-03-29 2006-02-22 2006-02-22 2014-11-19 25807 ENSG00000100263 OTTHUMG00000151032 uc003aeq.2 AL050346 NM_012265 CCDS13850 Q9Y3P4 "10591208|15105437" MGI:2444684 RGD:1311827 RHBDD3 S54.951 +HGNC:20561 RHBDF1 rhomboid 5 homolog 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "EGFR-RS|FLJ2235|Dist1|iRhom1" C16orf8 "chromosome 16 open reading frame 8|rhomboid family 1 (Drosophila)|rhomboid 5 homolog 1 (Drosophila)" Rhomboid family 926 2003-04-07 2016-05-09 2016-05-09 64285 ENSG00000007384 OTTHUMG00000060719 uc002cfl.4 BC014425 NM_022450 CCDS32344 Q96CC6 "8318735|15965977" MGI:104328 RGD:1305075 RHBDF1 614403 S54.952 +HGNC:44499 RHBDF1P1 RHBDF1 pseudogene 1 pseudogene pseudogene Approved 3p25.1 03p25.1 2012-11-12 2014-12-17 2014-12-17 131973 ENSG00000234123 OTTHUMG00000155546 NG_022195 PGOHUM00000237542 +HGNC:20788 RHBDF2 rhomboid 5 homolog 2 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FLJ22341|RHBDL5|TOCG|iRhom2" "RHBDL6|TOC" "rhomboid, veinlet-like 6 (Drosophila)|tylosis with oesophageal cancer|rhomboid 5 homolog 2 (Drosophila)" Rhomboid family 926 2004-07-07 2006-02-22 2016-05-09 2016-10-12 79651 ENSG00000129667 OTTHUMG00000180180 uc060kji.1 BC016034 NM_024599 "CCDS32743|CCDS32744" Q6PJF5 "12838346|22265016" MGI:2442473 RGD:1309699 LRG_532|http://www.lrg-sequence.org/LRG/LRG_532 RHBDF2 614404 292385 S54.953 +HGNC:10007 RHBDL1 rhomboid like 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 RRP RHBDL "rhomboid (veinlet, Drosophila)-like|rhomboid, veinlet-like 1 (Drosophila)" Rhomboid family 926 1999-01-20 2003-04-11 2016-05-09 2016-05-09 9028 ENSG00000103269 OTTHUMG00000121141 uc002cir.2 Y17108 NM_003961 CCDS61779 O75783 9662444 MGI:2384891 RGD:620699 RHBDL1 603264 S54.005 3.4.21.105 +HGNC:16083 RHBDL2 rhomboid like 2 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ20435 "rhomboid (veinlet, Drosophila)-like 2|rhomboid, veinlet-like 2 (Drosophila)" Rhomboid family 926 2001-07-20 2016-05-09 2016-10-05 54933 ENSG00000158315 OTTHUMG00000000487 uc001ccu.1 AK000442 NM_017821 CCDS30680 Q9NX52 MGI:3608413 RGD:1308295 RHBDL2 608962 S54.002 3.4.21.105 +HGNC:16502 RHBDL3 rhomboid like 3 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 VRHO RHBDL4 "rhomboid, veinlet-like 4 (Drosophila)|rhomboid, veinlet-like 3 (Drosophila)" "EF-hand domain containing|Rhomboid family" "863|926" 2001-11-26 2016-05-09 2016-05-09 162494 ENSG00000141314 OTTHUMG00000179568 uc002hhe.1 AJ313480 NM_138328 "CCDS32613|CCDS82103" P58872 11900977 MGI:2179276 RGD:1311901 RHBDL3 3.4.21.105 +HGNC:14572 RHBG Rh family B glycoprotein (gene/pseudogene) protein-coding gene gene with protein product Approved 1q22 01q22 SLC42A2 Rhesus blood group, B glycoprotein Solute carriers 752 2001-05-08 2016-01-13 2016-01-13 57127 ENSG00000132677 OTTHUMG00000024057 uc031vbi.2 AF193807 NM_001256395 CCDS41414 Q9H310 10852913 MGI:1927379 RGD:727813 RHBG 607079 SLC42A2 objectId:1199 +HGNC:10008 RHCE Rh blood group CcEe antigens protein-coding gene gene with protein product Approved 1p36.11 01p36.11 CD240CE RH Rhesus blood group, CcEe antigens "Blood group antigens|CD molecules" "454|471" 1993-10-22 2016-01-13 2016-10-12 6006 ENSG00000188672 OTTHUMG00000007650 uc001bkf.4 BC075081 NM_020485 "CCDS30634|CCDS30635|CCDS30636|CCDS30637|CCDS81283" P18577 8220426 MGI:1202882 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_797|http://www.lrg-sequence.org/LRG/LRG_797" RHCE 111700 118311 CD240CE +HGNC:18140 RHCG Rh family C glycoprotein protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "RHGK|PDRC2|SLC42A3" C15orf6 "chromosome 15 open reading frame 6|Rhesus blood group, C glycoprotein" Solute carriers 752 2002-11-26 2016-01-13 2016-10-05 51458 ENSG00000140519 OTTHUMG00000149647 uc002bnz.4 AF081497 NM_016321 CCDS10351 Q9UBD6 10852913 MGI:1888517 RGD:727859 RHCG 605381 SLC42A3 objectId:1200 +HGNC:10009 RHD Rh blood group D antigen protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "Rh30a|Rh4|RhPI|RhII|DIIIc|CD240D" RH Rhesus blood group, D antigen "Blood group antigens|CD molecules" "454|471" 1986-01-01 2016-01-13 2016-10-12 6007 ENSG00000187010 OTTHUMG00000003476 uc001bjz.5 AB012623 NM_016124 "CCDS262|CCDS53285|CCDS60027|CCDS60028|CCDS60029|CCDS60030|CCDS60031" Q02161 8220426 MGI:1202882 RGD:620451 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_796|http://www.lrg-sequence.org/LRG/LRG_796" RHD 111680 286217 CD240D +HGNC:10011 RHEB Ras homolog enriched in brain protein-coding gene gene with protein product Approved 7q36.1 07q36.1 RHEB2 Ras homolog enriched in brain 2 RAS type GTPase family 389 1996-07-17 2003-07-14 2003-07-14 2016-10-05 6009 ENSG00000106615 OTTHUMG00000157330 uc003wkh.1 D78132 NM_005614 CCDS5927 Q15382 8661031 MGI:97912 RGD:621840 RHEB 601293 +HGNC:21166 RHEBL1 Ras homolog enriched in brain like 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "MGC34869|FLJ25797" RAS type GTPase family 389 2003-05-22 2014-11-19 121268 ENSG00000167550 OTTHUMG00000170407 uc001rtc.2 AK098663 NM_144593 CCDS8778 Q8TAI7 12477932 MGI:1916409 RGD:727778 RHEBL1 +HGNC:10010 RHEBP1 Ras-homolog enriched in brain pseudogene 1 pseudogene pseudogene Approved 10q11 10q11 RHEB RHEB1 Ras homolog enriched in brain 1 1995-11-14 2003-07-16 2003-07-14 2014-11-19 6008 ENSG00000229927 OTTHUMG00000018102 NG_002826 8206940 PGOHUM00000238769 +HGNC:44991 RHEBP2 Ras-homolog enriched in brain pseudogene 2 pseudogene pseudogene Approved 10q11.22 10q11.22 2013-01-04 2013-01-04 101060032 ENSG00000226964 OTTHUMG00000018122 PGOHUM00000238773 +HGNC:44992 RHEBP3 Ras-homolog enriched in brain pseudogene 3 pseudogene pseudogene Approved 22q11.21 22q11.21 2013-01-04 2013-01-04 692231 ENSG00000237446 OTTHUMG00000150061 NG_005692 PGOHUM00000246394 +HGNC:28206 RHNO1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "HKMT1188|MGC13204|RHINO" Rad9, Rad1, Hus1 interacting nuclear orphan C12orf32 chromosome 12 open reading frame 32 2006-01-17 2012-08-23 2012-08-23 2014-11-19 83695 ENSG00000171792 OTTHUMG00000158557 uc031qfr.2 AK021945 NM_031465 "CCDS8518|CCDS58199" Q9BSD3 "20811708|21659603" MGI:1915315 RGD:1359404 614085 +HGNC:10012 RHO rhodopsin protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "OPN2|CSNBAD1" opsin 2, rod pigment RP4 retinitis pigmentosa 4, autosomal dominant Opsin receptors 215 1986-01-01 2008-04-16 2015-08-04 6010 ENSG00000163914 OTTHUMG00000159542 uc003emt.4 AB065668 NM_000539 CCDS3063 P08100 2016091 MGI:97914 RGD:3573 Mutations of the Rhodopsin Gene|http://www.retina-international.org/files/sci-news/rhomut.htm RHO 180380 118315 +HGNC:667 RHOA ras homolog family member A protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "RhoA|Rho12|RHOH12" "ARH12|ARHA" ras homolog gene family, member A Rho family GTPases 390 1990-03-19 2004-03-23 2012-02-27 2016-10-12 387 ENSG00000067560 OTTHUMG00000156838 uc003cwu.4 BC001360 NM_001664 "CCDS2795|CCDS82774|CCDS82775" P61586 9605859 MGI:1096342 RGD:619921 LRG_1085|http://www.lrg-sequence.org/LRG/LRG_1085 RHOA 165390 +HGNC:41308 RHOA-IT1 RHOA intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 RHOA intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 106480739 ENSG00000235908 OTTHUMG00000156844 uc062jtd.1 +HGNC:668 RHOB ras homolog family member B protein-coding gene gene with protein product Approved 2p24.1 02p24.1 "RhoB|RHOH6|MST081" oncogene RHO H6 "ARH6|ARHB" ras homolog gene family, member B Rho family GTPases 390 1997-04-16 2004-03-24 2012-02-27 2016-10-05 388 ENSG00000143878 OTTHUMG00000090755 uc002rdv.4 NM_004040 CCDS1699 P62745 "3283705|16278215" MGI:107949 RGD:621309 RHOB 165370 +HGNC:18738 RHOBTB1 Rho related BTB domain containing 1 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 KIAA0740 Rho-related BTB domain containing 1 "Rho family GTPases|BTB domain containing" "390|861" 2002-06-21 2016-02-23 2016-10-05 9886 ENSG00000072422 OTTHUMG00000018292 uc001jlk.4 AB018283 XM_017017000 CCDS7261 O94844 11222756 MGI:1916538 RGD:1306871 RHOBTB1 607351 +HGNC:18756 RHOBTB2 Rho related BTB domain containing 2 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "KIAA0717|DBC2" Rho-related BTB domain containing 2 "Rho family GTPases|BTB domain containing" "390|861" 2002-06-21 2016-02-23 2016-10-05 23221 ENSG00000008853 OTTHUMG00000097827 uc003xcq.3 AF315385 XM_017013251 "CCDS6034|CCDS55210|CCDS55211" Q9BYZ6 11222756 MGI:2180557 RGD:1309924 RHOBTB2 607352 +HGNC:18757 RHOBTB3 Rho related BTB domain containing 3 protein-coding gene gene with protein product Approved 5q15 05q15 KIAA0878 Rho-related BTB domain containing 3 BTB domain containing 861 2002-06-21 2016-02-23 2016-02-23 22836 ENSG00000164292 OTTHUMG00000121171 uc003klm.4 AB020685 NM_014899 CCDS4077 O94955 "11222756|17035353" MGI:1920546 RGD:1311683 RHOBTB3 607353 +HGNC:669 RHOC ras homolog family member C protein-coding gene gene with protein product Approved 1p13.2 01p13.2 RhoC "ARH9|ARHC" ras homolog gene family, member C Rho family GTPases 390 1997-04-16 2004-03-24 2012-02-27 2016-10-05 389 ENSG00000155366 OTTHUMG00000011905 uc001ecr.2 BC052808 NM_175744 CCDS854 P08134 3283705 MGI:106028 RGD:1304965 RHOC 165380 +HGNC:670 RHOD ras homolog family member D protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "RhoHP1|RhoD|Rho" "Rho-related protein HP1|Rho-related GTP-binding protein RhoD" ARHD ras homolog gene family, member D Rho family GTPases 390 2000-03-06 2004-03-24 2012-02-27 2016-10-05 29984 ENSG00000173156 OTTHUMG00000167102 uc001ojv.4 D85815 NM_014578 "CCDS8155|CCDS73330" O00212 9116026 MGI:108446 RGD:1310985 RHOD 605781 +HGNC:15703 RHOF ras homolog family member F, filopodia associated protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "FLJ20247|RIF" rho in filopodia ARHF "ras homolog gene family, member F (in filopodia)|ras homolog family member F (in filopodia)" Rho family GTPases 390 2001-06-01 2004-03-24 2016-07-08 2016-07-08 54509 ENSG00000139725 OTTHUMG00000169077 uc001ubb.4 AK000254 NM_019034 CCDS9222 Q9HBH0 11084341 MGI:1345629 RGD:1584038 RHOF +HGNC:672 RHOG ras homolog family member G protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "RhoG|MGC125835|MGC125836" ARHG ras homolog gene family, member G (rho G) Rho family GTPases 390 1993-01-20 2004-03-24 2012-02-27 2016-10-05 391 ENSG00000177105 OTTHUMG00000012287 uc001lyu.2 X61587 NM_001665 CCDS7748 P84095 8325658 MGI:1928370 RGD:621310 RHOG 179505 +HGNC:686 RHOH ras homolog family member H protein-coding gene gene with protein product Approved 4p14 04p14 "RhoH|TTF" ARHH ras homolog gene family, member H Rho family GTPases 390 1997-04-16 2004-03-24 2012-02-27 2016-10-12 399 ENSG00000168421 OTTHUMG00000099373 uc021xnp.3 Z35227 NM_004310 CCDS3458 Q15669 7784061 MGI:1921984 RGD:1307623 LRG_736|http://www.lrg-sequence.org/LRG/LRG_736 RHOH 602037 327301 +HGNC:688 RHOJ ras homolog family member J protein-coding gene gene with protein product Approved 14q23.2 14q23.2 "FLJ14445|TCL" "RASL7B|ARHJ" "RAS-like, family 7, member B|ras homolog gene family, member J" Rho family GTPases 390 1999-07-30 2004-03-24 2012-02-27 2016-10-05 57381 ENSG00000126785 OTTHUMG00000140342 uc001xgb.3 AK027351 XR_245708 CCDS9757 Q9H4E5 10967094 MGI:1931551 RGD:1310528 RHOJ 607653 +HGNC:17736 RHOQ ras homolog family member Q protein-coding gene gene with protein product Approved 2p21 02p21 TC10 "RASL7A|ARHQ" "RAS-like, family 7, member A|ras homolog gene family, member Q" Rho family GTPases 390 2003-03-13 2004-03-24 2012-02-27 2014-11-18 23433 ENSG00000119729 OTTHUMG00000150653 uc002rva.4 M31470 NM_012249 CCDS33191 P17081 2108320 MGI:1931553 RGD:621626 RHOQ 605857 +HGNC:20003 RHOQP1 ras homolog family member Q pseudogene 1 pseudogene pseudogene Approved 14q21.3 14q21.3 "ARHQP|RHOQP" "ras homolog gene family, member Q pseudogene|ras homolog gene family, member Q pseudogene 1" 2003-01-13 2010-03-05 2012-02-27 2014-11-19 319093 ENSG00000258568 OTTHUMG00000170812 NG_002478 PGOHUM00000248161 +HGNC:37836 RHOQP2 ras homolog family member Q pseudogene 2 pseudogene pseudogene Approved 2q21.1 02q21.1 ras homolog gene family, member Q pseudogene 2 2010-03-05 2012-02-27 2014-11-19 730041 ENSG00000232742 OTTHUMG00000153608 NG_023007 PGOHUM00000240942 +HGNC:37837 RHOQP3 ras homolog family member Q pseudogene 3 pseudogene pseudogene Approved 2q21.1 02q21.1 ras homolog gene family, member Q pseudogene 3 2010-03-05 2012-02-27 2014-11-19 284988 ENSG00000230756 OTTHUMG00000153752 NG_022969 PGOHUM00000240296 +HGNC:21168 RHOT1 ras homolog family member T1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "MIRO-1|FLJ11040" mitochondrial Rho (MIRO) GTPase 1 ARHT1 ras homolog gene family, member T1 "Miro like atypical Rho GTPases|EF-hand domain containing" "392|863" 2003-07-10 2004-03-24 2012-02-27 2016-01-15 55288 ENSG00000126858 OTTHUMG00000179564 uc002hgy.5 AJ517412 NM_018307 "CCDS32610|CCDS32611|CCDS32612|CCDS74030|CCDS74031" Q8IXI2 12482879 MGI:1926078 RGD:1307023 RHOT1 613888 +HGNC:23777 RHOT1P1 ras homolog family member T1 pseudogene 1 pseudogene pseudogene Approved 18p11.21 18p11.21 "RHOT3|RHOT1P" "ras homolog gene family, member T3|ras homolog gene family, member T1 pseudogene|ras homolog gene family, member T1 pseudogene 1" 2005-10-06 2010-03-05 2012-02-27 2014-11-19 100462813 ENSG00000266145 OTTHUMG00000178664 NG_026314 PGOHUM00000235011 +HGNC:37838 RHOT1P2 ras homolog family member T1 pseudogene 2 pseudogene pseudogene Approved 21q11.2 21q11.2 ras homolog gene family, member T1 pseudogene 2 2010-03-05 2012-02-27 2014-11-19 100462811 ENSG00000203616 OTTHUMG00000155588 NG_021988 PGOHUM00000239031 +HGNC:37839 RHOT1P3 ras homolog family member T1 pseudogene 3 pseudogene pseudogene Approved 13q11 13q11 ras homolog gene family, member T1 pseudogene 3 2010-03-05 2012-02-27 2014-11-19 100462810 ENSG00000242756 OTTHUMG00000086705 NG_021958 PGOHUM00000248294 +HGNC:21169 RHOT2 ras homolog family member T2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MIRO-2 mitochondrial Rho (MIRO) GTPase 2 "C16orf39|ARHT2" "chromosome 16 open reading frame 39|ras homolog gene family, member T2" "Miro like atypical Rho GTPases|EF-hand domain containing" "392|863" 2003-07-10 2004-03-24 2012-02-27 2015-09-07 89941 ENSG00000140983 OTTHUMG00000121139 uc002cip.4 BC014942 NM_138769 CCDS10417 Q8IXI1 12482879 MGI:2384892 RGD:727970 RHOT2 613889 +HGNC:17794 RHOU ras homolog family member U protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "WRCH-1|DJ646B12.2|FLJ10616|WRCH1|CDC42L1|hG28K|fJ646B12.2" "Ryu GTPase|Wnt-1 responsive Cdc42 homolog|2310026M05Rik|GTP-binding protein like 1|CDC42-like GTPase|GTP-binding protein SB128|ras-like gene family member U" ARHU ras homolog gene family, member U Rho family GTPases 390 2002-04-22 2004-03-24 2012-02-27 2016-10-05 58480 ENSG00000116574 OTTHUMG00000037919 uc001htf.3 NM_021205 CCDS1575 Q7L0Q8 11459829 MGI:1916831 RGD:1596918 RHOU 606366 +HGNC:18313 RHOV ras homolog family member V protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "Chp|WRCH2" ARHV ras homolog gene family, member V Rho family GTPases 390 2002-04-22 2004-03-24 2012-02-27 2016-10-05 171177 ENSG00000104140 OTTHUMG00000130134 uc001znd.3 AY059636 NM_133639 CCDS10068 Q96L33 11839775 MGI:2444227 RGD:628824 RHOV +HGNC:29993 RHOXF1 Rhox homeobox family member 1 protein-coding gene gene with protein product Approved Xq24 Xq24 "OTEX|PEPP1" Rhox homeobox family, member 1 PRD class homeoboxes and pseudogenes 521 2007-07-27 2015-11-18 2015-11-18 158800 ENSG00000101883 OTTHUMG00000022290 uc004esk.2 NM_139282 CCDS14593 Q8NHV9 "11980563|12490318" RGD:1563291 RHOXF1 300446 8630 +HGNC:51582 RHOXF1-AS1 RHOXF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq24 Xq24 2015-03-11 2015-03-11 101928969 ENSG00000258545 OTTHUMG00000171158 AK123976 NR_131238 +HGNC:51580 RHOXF1P1 Rhox homeobox family member 1 pseudogene 1 pseudogene pseudogene Approved Xq24 Xq24 TCONS_00017086 Rhox homeobox family, member 1 pseudogene 1 2015-03-25 2015-11-18 2015-11-18 101928941 ENSG00000234493 OTTHUMG00000022289 BX331476 NR_131250 300973 +HGNC:51611 RHOXF1P2 Rhox homeobox family member 1 pseudogene 2 pseudogene pseudogene Approved Xq24 Xq24 Rhox homeobox family, member 1 pseudogene 2 2015-03-25 2015-11-18 2015-11-18 107075106 ENSG00000282850 OTTHUMG00000191484 NG_046544 +HGNC:51612 RHOXF1P3 Rhox homeobox family member 1 pseudogene 3 pseudogene pseudogene Approved Xq24 Xq24 Rhox homeobox family, member 1 pseudogene 3 2015-03-25 2015-11-18 2015-11-18 107075307 ENSG00000282933 OTTHUMG00000191483 NG_046545 +HGNC:30011 RHOXF2 Rhox homeobox family member 2 protein-coding gene gene with protein product Approved Xq24 Xq24 "THG1|PEPP-2|PEPP2|CT107" cancer/testis antigen 107 Rhox homeobox family, member 2 PRD class homeoboxes and pseudogenes 521 2007-07-27 2015-11-18 2015-11-18 84528 ENSG00000131721 OTTHUMG00000022296 uc004esl.5 NM_032498 CCDS14594 Q9BQY4 12490318 RHOXF2 300447 8629 +HGNC:33519 RHOXF2B Rhox homeobox family member 2B protein-coding gene gene with protein product Approved Xq24 Xq24 Rhox homeobox family, member 2B PRD class homeoboxes and pseudogenes 521 2007-07-27 2015-11-18 2015-11-18 727940 ENSG00000203989 OTTHUMG00000022288 uc004esj.6 NM_001099685 CCDS43985 P0C7M4 RGD:2321855 RHOXF2B 8628 +HGNC:19973 RHPN1 rhophilin Rho GTPase binding protein 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "KIAA1929|RHPN|ODF5" PDZ domain containing 1220 2003-01-21 2016-06-29 2016-06-29 114822 ENSG00000158106 OTTHUMG00000165006 uc003yyb.4 AB067516 XM_011516817 CCDS47927 Q8TCX5 11572484 MGI:1098783 RGD:1305688 RHPN1 601031 +HGNC:28457 RHPN1-AS1 RHPN1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 MGC3113 C8orf51 "chromosome 8 open reading frame 51|RHPN1 antisense RNA 1 (non-protein coding)|RHPN1 antisense RNA 1" 2005-08-11 2012-04-13 2012-10-15 2016-10-05 78998 ENSG00000254389 OTTHUMG00000165005 uc011lkg.5 NR_026785 Q9BWJ2 12477932 +HGNC:19974 RHPN2 rhophilin Rho GTPase binding protein 2 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 PDZ domain containing 1220 2003-01-21 2016-06-29 2016-06-29 85415 ENSG00000131941 OTTHUMG00000180340 uc002nuf.4 AF268032 NM_033103 CCDS12427 Q8IUC4 12221077 MGI:1289234 RGD:1308366 RHPN2 +HGNC:37708 RHPN2P1 rhophilin Rho GTPase binding protein 2 pseudogene 1 pseudogene pseudogene Approved 15q11.1 15q11.1 2010-02-01 2016-06-29 2016-06-29 646090 XR_017120 A8MT19 +HGNC:26537 RIBC1 RIB43A domain with coiled-coils 1 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 FLJ32783 2004-08-18 2016-10-05 158787 ENSG00000158423 OTTHUMG00000021615 uc004dsk.6 AK057345 NM_144968 "CCDS14353|CCDS35299|CCDS59168" Q8N443 MGI:1913861 RGD:1359621 RIBC1 +HGNC:13241 RIBC2 RIB43A domain with coiled-coils 2 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "DKFZp566F0546|FLJ25720" C22orf11 chromosome 22 open reading frame 11 2004-06-07 2004-08-18 2004-08-18 2016-10-05 26150 ENSG00000128408 OTTHUMG00000151332 uc032qrc.2 AK098586 NM_015653 CCDS14066 Q9H4K1 12477932 MGI:1914997 RGD:1309033 RIBC2 +HGNC:17686 RIC1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 bA207C16.1 KIAA1432 "KIAA1432|RAB6A GEF complex partner 1" 2003-12-02 2014-07-23 2015-07-22 2016-04-25 57589 ENSG00000107036 OTTHUMG00000019505 AB037853 XM_039698 "CCDS34982|CCDS47949|CCDS75811" Q4ADV7 "10718198|23091056" MGI:1924893 RGD:1310016 610354 +HGNC:30338 RIC3 RIC3 acetylcholine receptor chaperone protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "FLJ11608|PRO1385|AYST720" resistance to inhibitors of cholinesterase 3 homolog (C. elegans) 2005-08-17 2013-08-05 2014-11-18 79608 ENSG00000166405 OTTHUMG00000165694 uc001mgc.3 NM_024557 "CCDS7788|CCDS44533|CCDS55741|CCDS55742" Q7Z5B4 12821669 MGI:2443887 RGD:1588939 RIC3 610509 +HGNC:29550 RIC8A RIC8 guanine nucleotide exchange factor A protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "synembryn|synembryn-A" resistance to inhibitors of cholinesterase 8 homolog A (C. elegans) 2005-08-17 2013-08-05 2014-11-18 60626 ENSG00000177963 OTTHUMG00000119069 uc001lof.5 AK022870 NM_021932 "CCDS7690|CCDS65982" Q9NPQ8 "10985349|11230166" MGI:2141866 RGD:727957 RIC8A 609146 +HGNC:25555 RIC8B RIC8 guanine nucleotide exchange factor B protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "FLJ10620|hSyn|RIC8" resistance to inhibitors of cholinesterase 8 homolog B (C. elegans) 2005-08-17 2013-08-05 2014-11-18 55188 ENSG00000111785 OTTHUMG00000144188 uc001tlx.4 AK128102 NM_018157 "CCDS9109|CCDS81733|CCDS81734" Q9NVN3 MGI:2682307 RGD:631419 RIC8B 609147 +HGNC:28611 RICTOR RPTOR independent companion of MTOR complex 2 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 "MGC39830|AVO3|PIA|KIAA1999" "rapamycin-insensitive companion of mTOR|pianissimo" RPTOR independent companion of MTOR, complex 2 MTOR complex 2 1333 2009-05-29 2016-04-01 2016-04-01 253260 ENSG00000164327 OTTHUMG00000162037 uc003jlp.4 NM_152756 "CCDS34148|CCDS68861" Q6R327 12477932 MGI:1926007 RGD:1307224 RICTOR 609022 +HGNC:16897 RIDA reactive intermediate imine deaminase A homolog protein-coding gene gene with protein product Approved 8q22.2 08q22.2 "UK114|P14.5|PSP" "translational inhibitor p14.5|reactive intermediate/imine deaminase A homolog" HRSP12 heat-responsive protein 12 2004-06-03 2016-01-18 2016-01-18 2016-10-05 10247 ENSG00000132541 OTTHUMG00000164670 uc003yii.2 BC008418 NM_005836 CCDS6276 P52758 "8973653|20817725|22094463" MGI:1095401 RGD:70940 602487 +HGNC:10015 RIEG2 Rieger syndrome 2 phenotype phenotype only Approved 13q14 13q14 ARS 1996-12-12 1998-08-18 6012 601499 +HGNC:23207 RIF1 replication timing regulatory factor 1 protein-coding gene gene with protein product Approved 2q23.3 02q23.3 "FLJ12870|FLJ10599" RAP1 interacting factor homolog (yeast) 2004-12-09 2014-06-02 2014-11-18 55183 ENSG00000080345 OTTHUMG00000131886 uc061ope.1 AK022932 XM_005246665 "CCDS2194|CCDS54406" Q5UIP0 "15342490|15042697|22850674" MGI:1098622 RGD:1562474 RIF1 608952 +HGNC:26686 RIIAD1 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 FLJ36032 "NCRNA00166|C1orf230" "non-protein coding RNA 166|chromosome 1 open reading frame 230" 2008-12-09 2011-01-11 2011-01-11 2011-01-11 284485 ENSG00000178796 OTTHUMG00000013055 uc010pdj.2 NM_001144956 CCDS53368 A6NNX1 MGI:1913603 RGD:2303311 RIIAD1 +HGNC:30266 RILP Rab interacting lysosomal protein protein-coding gene gene with protein product Approved 17p13.3 17p13.3 FLJ31193 2004-03-11 2014-11-19 83547 ENSG00000167705 OTTHUMG00000090554 uc002ftd.4 AJ404317 NM_031430 CCDS11009 Q96NA2 11179213 MGI:2144271 RGD:1307691 RILP 607848 +HGNC:26814 RILPL1 Rab interacting lysosomal protein like 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 FLJ39378 2007-11-27 2016-07-07 2016-07-07 353116 ENSG00000188026 OTTHUMG00000168686 uc001ufe.3 AK097550 NM_178314 "CCDS45006|CCDS81752" Q5EBL4 14668488 MGI:1922945 RGD:1307973 RILPL1 614092 +HGNC:28787 RILPL2 Rab interacting lysosomal protein like 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "MGC7036|FLJ30380|FLJ32372" Rab interacting lysosomal protein-like 2 2007-11-27 2016-03-11 2016-03-11 196383 ENSG00000150977 OTTHUMG00000187294 uc001uey.2 AB085763 NM_145058 CCDS9248 Q969X0 14668488 MGI:1933112 RGD:1303140 RILPL2 614093 +HGNC:30339 RIMBP2 RIMS binding protein 2 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "KIAA0318|RBP2|MGC15831|RIM-BP2|PPP1R133" protein phosphatase 1, regulatory subunit 133 Protein phosphatase 1 regulatory subunits 694 2006-01-24 2014-11-19 23504 ENSG00000060709 OTTHUMG00000168385 uc001uim.4 AB002316 NM_015347 CCDS31925 O15034 10748113 MGI:2443235 RGD:708533 RIMBP2 611602 +HGNC:29344 RIMBP3 RIMS binding protein 3 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "KIAA1666|RIMBP3.1|RIMBP3A" 2007-11-21 2015-02-03 85376 ENSG00000275793 OTTHUMG00000188355 uc002zsd.5 AB051453 NM_015672 CCDS46665 Q9UFD9 "11258795|17855024" MGI:2685449 RIMBP3 612699 +HGNC:33891 RIMBP3B RIMS binding protein 3B protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2007-11-21 2015-09-09 440804 ENSG00000274600 OTTHUMG00000150819 uc002zuq.5 XM_036936 CCDS46668 A6NNM3 17855024 MGI:2685449 RIMBP3B 612700 +HGNC:33892 RIMBP3C RIMS binding protein 3C protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2007-11-21 2015-09-09 150221 ENSG00000183246 OTTHUMG00000150825 uc002zuy.5 XM_036942 CCDS46669 A6NJZ7 17855024 MGI:2685449 RGD:1563657 RIMBP3C 612701 +HGNC:28725 RIMKLA ribosomal modification protein rimK like family member A protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "MGC47816|RP11-157D18.1|NAAGS-II" N-acetylaspartylglutamate synthetase II FAM80A family with sequence similarity 80, member A 2005-07-21 2008-10-13 2016-06-28 2016-06-28 284716 ENSG00000177181 OTTHUMG00000007335 uc001chi.3 BC039737 NM_173642 CCDS466 Q8IXN7 "20657015|21454531" MGI:3040686 RGD:1306880 RIMKLA 6.3.2.N6 +HGNC:29228 RIMKLB ribosomal modification protein rimK like family member B protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "KIAA1238|NAAGS|NAAGS-I" "N-acetylaspartyl-glutamate synthetase|Beta-citrylglutamate synthase B" FAM80B family with sequence similarity 80, member B 2005-07-21 2008-10-13 2016-06-28 2016-08-24 57494 ENSG00000166532 OTTHUMG00000168197 uc001qux.2 AB033064 NM_020734 CCDS41748 Q9ULI2 "10574462|20643647" MGI:1918325 RGD:1560851 RIMKLB 614054 6.3.2.N6 +HGNC:34034 RIMKLBP1 ribosomal modification protein rimK like family member B pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 "FAM80C|RIMKLP|FAM80B2|RIMKLB2" "ribosomal modification protein rimK-like (E. coli) pseudogene|family with sequence similarity 80, member B2|ribosomal modification protein rimK-like family member B2" 2008-03-28 2010-10-25 2016-06-28 2016-06-28 54031 ENSG00000189089 OTTHUMG00000086605 NG_000912 PGOHUM00000239170 +HGNC:39163 RIMKLBP2 ribosomal modification protein rimK like family member B pseudogene 2 pseudogene pseudogene Approved 1q41 01q41 2010-10-25 2016-06-28 2016-06-28 100422371 ENSG00000225920 OTTHUMG00000037142 NG_027041 PGOHUM00000244422 +HGNC:17282 RIMS1 regulating synaptic membrane exocytosis 1 protein-coding gene gene with protein product Approved 6q13 06q13 "RIM|KIAA0340|RIM1" Rab3-interacting molecule "RAB3IP2|CORD7" RAB3 interacting protein 2 "Regulating synaptic membrane exocytosis family|PDZ domain containing" "833|1220" 2002-04-29 2002-06-14 2002-06-12 2016-10-05 22999 ENSG00000079841 OTTHUMG00000015009 uc003pga.5 AB002338 NM_014989 "CCDS47449|CCDS55029|CCDS55030|CCDS55031|CCDS55032|CCDS55033" Q86UR5 "9205841|11438518" MGI:2152971 RGD:620000 RIMS1 606629 118319 +HGNC:17283 RIMS2 regulating synaptic membrane exocytosis 2 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "KIAA0751|RIM2|OBOE" RAB3IP3 RAB3 interacting protein 3 "Regulating synaptic membrane exocytosis family|PDZ domain containing" "833|1220" 2002-04-29 2002-06-14 2002-06-12 2014-11-19 9699 ENSG00000176406 OTTHUMG00000162097 uc003ylp.4 AB018294 NM_001100117 "CCDS43761|CCDS64948|CCDS64949|CCDS55269" Q9UQ26 "9872452|12578829" MGI:2152972 RGD:620001 RIMS2 606630 +HGNC:21292 RIMS3 regulating synaptic membrane exocytosis 3 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "RIM3|NIM3" Regulating synaptic membrane exocytosis family 833 2003-06-19 2014-11-19 9783 ENSG00000117016 OTTHUMG00000007453 uc001cfu.2 BC003103 NM_014747 CCDS30687 Q9UJD0 "12620390|10748113" MGI:2443331 RGD:628762 RIMS3 611600 +HGNC:16183 RIMS4 regulating synaptic membrane exocytosis 4 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ781B1.3 C20orf190 chromosome 20 open reading frame 190 Regulating synaptic membrane exocytosis family 833 2001-07-17 2003-06-20 2003-06-18 2015-08-25 140730 ENSG00000101098 OTTHUMG00000032546 uc002xms.4 NM_182970 "CCDS13338|CCDS56191" Q9H426 12620390 MGI:2674366 RGD:628695 RIMS4 611601 +HGNC:18749 RIN1 Ras and Rab interactor 1 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 VPS9 domain containing 928 2002-09-11 2014-11-19 9610 ENSG00000174791 OTTHUMG00000167085 uc001ohn.2 L36463 NM_004292 CCDS31614 Q13671 "9144171|1849280" MGI:2385695 RGD:620006 RIN1 605965 +HGNC:18750 RIN2 Ras and Rab interactor 2 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 RASSF4 VPS9 domain containing 928 2002-09-11 2016-10-05 54453 ENSG00000132669 OTTHUMG00000031996 uc002wro.3 AB060339 XM_011529255 CCDS56182 Q8WYP3 "11733506|1849280|16423831" MGI:1921280 RGD:1305873 RIN2 610222 220916 +HGNC:18751 RIN3 Ras and Rab interactor 3 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 FLJ22439 VPS9 domain containing 928 2002-09-11 2015-08-25 79890 ENSG00000100599 OTTHUMG00000171198 uc001yap.4 BC025248 XM_017021651 CCDS32144 Q8TB24 11733506 MGI:2385708 RGD:1305849 RIN3 610223 +HGNC:10018 RING1 ring finger protein 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 RNF1 Ring finger proteins 58 1997-02-11 2016-10-05 6015 ENSG00000204227 OTTHUMG00000031278 uc003odk.4 NM_002931 CCDS34424 Q06587 1906426 MGI:1101770 RGD:3576 RING1 602045 +HGNC:24795 RINL Ras and Rab interactor like protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ45909 VPS9 domain containing 928 2008-07-25 2015-11-13 2015-11-13 126432 ENSG00000187994 OTTHUMG00000182299 uc060ygm.1 AK127808 NM_198445 "CCDS12522|CCDS59386" Q6ZS11 MGI:2444024 RGD:1310133 RINL +HGNC:21876 RINT1 RAD50 interactor 1 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 "FLJ11785|RINT-1" 2006-03-02 2016-10-05 60561 ENSG00000135249 OTTHUMG00000157400 uc003vda.1 AF317622 NM_021930 CCDS34726 Q6NUQ1 "11096100|15029241" MGI:1916233 RGD:1560433 RINT1 610089 +HGNC:18656 RIOK1 RIO kinase 1 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 "AD034|FLJ30006|bA288G3.1|RRP10" RIO kinase 1 (yeast) 2003-06-25 2012-12-10 2014-11-18 83732 ENSG00000124784 OTTHUMG00000014207 uc003mxn.4 BC006104 NM_031480 CCDS4500 Q9BRS2 MGI:1918590 RGD:1306086 RIOK1 objectId:2186 +HGNC:18999 RIOK2 RIO kinase 2 protein-coding gene gene with protein product Approved 5q15 05q15 FLJ11159 RIO kinase 2 (yeast) 2003-06-25 2012-12-10 2016-10-05 55781 ENSG00000058729 OTTHUMG00000128723 uc003kmz.4 AK002021 NM_018343 "CCDS4089|CCDS54884" Q9BVS4 MGI:1914295 RGD:1311588 RIOK2 objectId:2187 +HGNC:11451 RIOK3 RIO kinase 3 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 SUDD "sudD (suppressor of bimD6, Aspergillus nidulans) homolog|RIO kinase 3 (yeast)" 1999-02-01 2003-06-25 2012-12-10 2015-08-25 8780 ENSG00000101782 OTTHUMG00000131813 uc002kui.5 AF013591 NM_003831 CCDS11877 O14730 9602165 MGI:1914128 RGD:1310833 RIOK3 603579 objectId:2188 +HGNC:39714 RIOK3P1 RIO kinase 3 pseudogene 1 pseudogene pseudogene Approved 13q22.1 13q22.1 RIO kinase 3 (yeast) pseudogene 1 2011-03-23 2012-12-10 2016-10-05 122145 ENSG00000225944 OTTHUMG00000017083 NG_002288 PGOHUM00000248633 +HGNC:10019 RIPK1 receptor interacting serine/threonine kinase 1 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 RIP receptor-interacting protein kinase 1 receptor (TNFRSF)-interacting serine-threonine kinase 1 Ripoptosome 1340 1999-05-07 2015-11-17 2015-11-17 8737 ENSG00000137275 OTTHUMG00000014134 uc063llv.1 U25994 NM_003804 CCDS4482 Q13546 "7538908|8612133" MGI:108212 RGD:1310158 RIPK1 603453 objectId:2189 +HGNC:10020 RIPK2 receptor interacting serine/threonine kinase 2 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "RICK|RIP2|CARDIAK|CARD3" receptor-interacting serine-threonine kinase 2 Caspase recruitment domain containing 959 1999-05-07 2015-11-17 2016-10-05 8767 ENSG00000104312 OTTHUMG00000163809 uc003yee.4 AC004003 XM_005251092 CCDS6247 O43353 "9575181|9705938" MGI:1891456 RGD:1309167 RIPK2 603455 objectId:2190 +HGNC:10021 RIPK3 receptor interacting serine/threonine kinase 3 protein-coding gene gene with protein product Approved 14q12 14q12 RIP3 receptor-interacting serine-threonine kinase 3 1999-12-17 2015-11-17 2015-11-17 11035 ENSG00000129465 OTTHUMG00000029349 uc001wpb.4 AF156884 NM_006871 CCDS9628 Q9Y572 "10339433|10358032" MGI:2154952 RGD:628899 RIPK3 605817 objectId:2191 +HGNC:496 RIPK4 receptor interacting serine/threonine kinase 4 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "DIK|ANKK2|RIP4|PKK" "protein kinase C-associated kinase|PKC-delta-interacting protein kinase" ANKRD3 "ankyrin repeat domain 3|receptor-interacting serine-threonine kinase 4" Ankyrin repeat domain containing 403 2000-05-23 2004-07-06 2015-11-17 2015-11-17 54101 ENSG00000183421 OTTHUMG00000086770 uc002yzn.2 AJ278016 NM_020639 CCDS13675 P57078 10830953 MGI:1919638 RGD:1311691 RIPK4 605706 291802 objectId:2192 +HGNC:25117 RIPPLY1 ripply transcriptional repressor 1 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 ripply1 homolog (zebrafish) 2007-08-16 2013-07-23 2013-07-23 92129 ENSG00000147223 OTTHUMG00000022153 uc004emr.3 NM_138382 "CCDS48145|CCDS55471" Q0D2K3 MGI:3614797 RGD:1588264 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RIPPLY1 RIPPLY1 300575 +HGNC:21390 RIPPLY2 ripply transcriptional repressor 2 protein-coding gene gene with protein product Approved 6q14.2 06q14.2 dJ237I15.1 C6orf159 "chromosome 6 open reading frame 159|ripply2 homolog (zebrafish)" 2003-11-26 2008-05-07 2013-07-23 2014-11-19 134701 ENSG00000203877 OTTHUMG00000015117 uc003pke.5 BC130460 NM_001009994 CCDS34493 Q5TAB7 MGI:2685968 RGD:1308746 RIPPLY2 609891 437793 +HGNC:3047 RIPPLY3 ripply transcriptional repressor 3 protein-coding gene gene with protein product Approved 21q22.13 21q22.13 DSCR6 "Down syndrome critical region gene 6|ripply3 homolog (zebrafish)" 2000-05-25 2013-06-04 2013-07-23 2016-10-05 53820 ENSG00000183145 OTTHUMG00000086639 AB037158 NM_018962 CCDS13648 P57055 "10814524|22354841" MGI:2181192 RGD:1308788 609892 +HGNC:23340 RIPPLY3P1 RIPPLY3 pseudogene 1 pseudogene pseudogene Approved 14q21.1 14q21.1 DSCR6P1 DSCR6 pseudogene 1 2010-09-30 2014-11-14 2014-11-14 2014-11-19 100421053 NG_027264 PGOHUM00000247774 +HGNC:10023 RIT1 Ras like without CAAX 1 protein-coding gene gene with protein product Approved 1q22 01q22 "RIBB|ROC1|MGC125864|MGC125865" "Ric-like, expressed in many tissues|GTP-binding protein Roc1" RIT Ric (Drosophila)-like, expressed in many tissues RAS type GTPase family 389 1996-08-28 2002-09-13 2016-05-04 2016-10-05 6016 ENSG00000143622 OTTHUMG00000014104 uc001fmh.3 AF084462 NM_006912 "CCDS1123|CCDS58037|CCDS58036" Q92963 "8824319|8918462" MGI:108053 RGD:1559874 RIT1 609591 358630 +HGNC:10017 RIT2 Ras like without CAAX 2 protein-coding gene gene with protein product Approved 18q12.3 18q12.3 RIBA RIN Ric (Drosophila)-like, expressed in neurons RAS type GTPase family 389 1996-08-28 2002-09-13 2016-05-04 2016-05-04 6014 ENSG00000152214 OTTHUMG00000132611 uc010dnf.5 BC018060 NM_002930 "CCDS11921|CCDS62431" Q99578 "8824319|8918462" MGI:108054 RGD:1307654 RIT2 609592 +HGNC:25925 RITA1 RBPJ interacting and tubulin associated 1 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "FLJ14827|RITA" RBP-J interacting and tubulin associated C12orf52 chromosome 12 open reading frame 52 2006-01-24 2013-12-10 2013-12-10 2014-11-18 84934 ENSG00000139405 OTTHUMG00000169643 AY007158 NM_032848 "CCDS9166|CCDS66473" Q96K30 "21102556|24308154" MGI:1922021 RGD:1306772 +HGNC:10024 RLBP1 retinaldehyde binding protein 1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 CRALBP retinaldehyde-binding protein 1 1991-05-15 2001-11-28 2014-11-19 6017 ENSG00000140522 OTTHUMG00000172884 uc002bnl.4 BC004199 NM_000326 CCDS32324 P12271 "1733864|9326942" MGI:97930 RGD:1309649 RLBP1 180090 118326 objectId:2545 +HGNC:10025 RLF rearranged L-myc fusion protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "ZNF292L|Zn-15L" rearranged L-myc fusion sequence Zinc fingers C2H2-type 28 1992-11-30 2005-08-16 2016-10-05 6018 ENSG00000117000 OTTHUMG00000005763 uc001cfc.5 NM_012421 CCDS448 Q13129 1649386 MGI:1924705 RGD:1305297 RLF 180610 +HGNC:16738 RLFP1 rearranged L-myc fusion pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 RLFP rearranged L-myc fusion pseudogene 2005-08-16 2010-03-05 2010-03-05 2014-11-19 57008 U22379 NG_001289 8545128 PGOHUM00000245666 +HGNC:13429 RLIM ring finger protein, LIM domain interacting protein-coding gene gene with protein product Approved Xq13.2 Xq13.2 "NY-REN-43|MGC15161" "ring zinc finger protein NY-REN-43antigen|LIM domain interacting ring finger protein" RNF12 ring finger protein 12 Ring finger proteins 58 2002-04-30 2009-02-17 2009-02-17 2016-10-05 51132 ENSG00000131263 OTTHUMG00000021859 uc004ebw.4 AF155109 NM_016120 CCDS14427 Q9NVW2 10508479 MGI:1342291 RGD:1559832 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RLIM RLIM 300379 +HGNC:39682 RLIMP1 ring finger protein, LIM domain interacting pseudogene 1 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-03-22 2014-02-12 100533695 ENSG00000229456 OTTHUMG00000016774 NG_028876 PGOHUM00000248571 +HGNC:39683 RLIMP2 ring finger protein, LIM domain interacting pseudogene 2 pseudogene pseudogene Approved 1p13.2 01p13.2 2011-03-22 2014-02-12 100533731 ENSG00000237278 OTTHUMG00000012132 NG_028828 PGOHUM00000244148 +HGNC:39684 RLIMP3 ring finger protein, LIM domain interacting pseudogene 3 pseudogene pseudogene Approved 15q21.2 15q21.2 2011-03-22 2014-02-12 645453 NG_022128 PGOHUM00000247113 +HGNC:10026 RLN1 relaxin 1 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 H1 prorelaxin H1 relaxin 1 (H1) Endogenous ligands 542 2001-06-22 2004-11-15 2015-08-25 6013 ENSG00000107018 OTTHUMG00000019495 uc003zjb.3 XM_017015007 CCDS6462 P04808 MGI:97931 RGD:3579 RLN1 179730 +HGNC:10027 RLN2 relaxin 2 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "H2|RLXH2|bA12D24.1.1|bA12D24.1.2" "relaxin H2|prorelaxin H2|relaxin, ovarian, of pregnancy" relaxin 2 (H2) Endogenous ligands 542 2001-06-22 2004-11-15 2014-11-19 6019 ENSG00000107014 OTTHUMG00000019496 uc003zja.3 NM_134441 CCDS6460 P04090 "6548703|6548702" MGI:97931 RLN2 179740 +HGNC:17135 RLN3 relaxin 3 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "ZINS4|RXN3|H3" prorelaxin H3 relaxin 3 (H3) Endogenous ligands 542 2001-11-16 2004-11-15 2015-08-25 117579 ENSG00000171136 OTTHUMG00000181986 uc002mxw.2 AF447451 NM_080864 "CCDS12302|CCDS82304" Q8WXF3 MGI:2158015 RGD:628745 RLN3 606855 +HGNC:10030 RMD1 rippling muscle disease 1 phenotype phenotype only Approved 1q41 01q41 1995-01-27 2003-09-09 6022 7936247 600332 +HGNC:24285 RMDN1 regulator of microtubule dynamics 1 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "CGI-90|FLJ20665|RMD1" FAM82B family with sequence similarity 82, member B 2005-07-27 2013-01-11 2013-01-11 2014-11-18 51115 ENSG00000176623 OTTHUMG00000163692 uc003ydu.4 AK000672 NM_016033 "CCDS34918|CCDS69509|CCDS69510|CCDS83305" Q96DB5 10810093 MGI:1913552 RGD:1563085 611871 +HGNC:26567 RMDN2 regulator of microtubule dynamics 2 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "FLJ32954|RMD2" "FAM82A|FAM82A1" family with sequence similarity 82, member A1 2005-07-27 2013-01-11 2013-01-11 2015-08-25 151393 ENSG00000115841 OTTHUMG00000128487 uc002rql.4 AK057516 NM_144713 "CCDS1792|CCDS54351|CCDS54352" Q96LZ7 12477932 MGI:2147043 RGD:1559836 611872 +HGNC:41150 RMDN2-AS1 RMDN2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p22.2 02p22.2 2013-01-11 2014-11-19 101410544 ENSG00000235848 OTTHUMG00000152578 uc061iff.1 DB142860 NR_102712 +HGNC:25550 RMDN3 regulator of microtubule dynamics 3 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "FLJ10579|PTPIP51|RMD3" "FAM82C|FAM82A2" family with sequence similarity 82, member A2 2005-07-27 2013-01-11 2013-01-11 2014-11-19 55177 ENSG00000137824 OTTHUMG00000130066 uc001zmq.2 AK001441 NM_018145 CCDS10063 Q96TC7 12975309 MGI:1915059 RGD:1308697 611873 +HGNC:25764 RMI1 RecQ mediated genome instability 1 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 "FLJ12888|BLAP75" BLM-Associated Polypeptide, 75 kDa C9orf76 "chromosome 9 open reading frame 76|RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)" 2004-01-06 2006-06-12 2013-06-10 2016-10-05 80010 ENSG00000178966 OTTHUMG00000020113 uc004anq.5 AK022950 NM_024945 CCDS6669 Q9H9A7 "15775963|20826341" MGI:1921636 RGD:1310671 RMI1 610404 +HGNC:28349 RMI2 RecQ mediated genome instability 2 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "MGC24665|BLAP18" C16orf75 "chromosome 16 open reading frame 75|RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)" 2006-07-04 2011-06-09 2013-06-10 2015-08-25 116028 ENSG00000175643 OTTHUMG00000129793 uc059quq.1 AK123764 NM_152308 CCDS10548 Q96E14 "18923083|20826341" MGI:2685383 RGD:1563163 RMI2 612426 +HGNC:21176 RMND1 required for meiotic nuclear division 1 homolog protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "bA351K16.3|FLJ20627|RMD1" C6orf96 "chromosome 6 open reading frame 96|required for meiotic nuclear division 1 homolog (S. cerevisiae)" 2003-05-22 2006-11-24 2015-07-22 2015-07-22 55005 ENSG00000155906 OTTHUMG00000015837 uc003qoi.4 AK000634 NM_017909 "CCDS5232|CCDS75539" Q9NWS8 23022098 MGI:1913334 RGD:1309546 RMND1 614917 327379 +HGNC:25850 RMND5A required for meiotic nuclear division 5 homolog A protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "FLJ13910|RMD5|GID2|GID2A|p44CTLH" "GID complex subunit 2 homolog A|44-kD protein coding for CTLH motif" required for meiotic nuclear division 5 homolog A (S. cerevisiae) 2006-03-31 2015-07-22 2015-07-22 64795 ENSG00000153561 OTTHUMG00000130262 uc002srr.3 BC012165 NM_022780 CCDS1991 Q9H871 17467196 MGI:1915727 RGD:1309766 RMND5A +HGNC:26181 RMND5B required for meiotic nuclear division 5 homolog B protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "FLJ22318|GID2|GID2B" GID complex subunit 2 homolog B required for meiotic nuclear division 5 homolog B (S. cerevisiae) 2006-03-31 2015-07-22 2015-07-22 64777 ENSG00000145916 OTTHUMG00000130897 uc003min.5 BC009911 NM_022762 "CCDS4431|CCDS75382" Q96G75 12975309 MGI:1913339 RGD:1559511 RMND5B +HGNC:10031 RMRP RNA component of mitochondrial RNA processing endoribonuclease non-coding RNA RNA, misc Approved 9p13.3 09p13.3 "RMRPR|RRP2|NME1" CHH cartilage-hair hypoplasia 1989-06-30 2002-05-23 2016-10-12 6023 ENSG00000277027 uc003zxh.2 M29916 NR_003051 "11207361|1623519" LRG_163|http://www.lrg-sequence.org/LRG/LRG_163 157660 138742 +HGNC:47031 RMRPP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-05 +HGNC:47032 RMRPP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-05 +HGNC:47033 RMRPP3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-05 +HGNC:47034 RMRPP4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-05 +HGNC:47035 RMRPP5 RNA component of mitochondrial RNA processing endoribonuclease pseudogene 5 pseudogene pseudogene Approved 9p21.3 09p21.3 2013-04-03 2013-04-03 106481874 ENSG00000223088 uc064slf.1 NG_044569 +HGNC:10032 RMSA1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:29893 RMST rhabdomyosarcoma 2 associated transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved 12q23.1 12q23.1 "NCRMS|NCRNA00054|LINC00054" "non-protein coding RNA 54|long intergenic non-protein coding RNA 54" 2006-01-19 2007-11-20 2012-10-16 196475 ENSG00000255794 OTTHUMG00000170148 uc001tfa.2 AK056164 NR_024037 "12082533|20062813" 607045 +HGNC:10034 RN5S1@ RNA, 5S ribosomal 1q42 cluster non-coding RNA RNA, cluster Approved 1q42.11-q42.13 01q42.11-q42.13 RN5S RNA, 5S cluster 1 1986-01-01 2012-05-18 2012-05-18 6025 4437633 180420 +HGNC:10035 RN5S2@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-05-18 +HGNC:10036 RN5S3@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-05-18 +HGNC:10037 RN7SK RNA, 7SK small nuclear non-coding RNA RNA, small nuclear Approved 6p12.2 06p12.2 7SK RNA, 7SK, nuclear Small nuclear RNAs 849 1994-07-11 2008-03-26 2016-07-20 125050 ENSG00000283293 OTTHUMG00000191875 uc032wyd.2 "X05490|X04236" NR_001445 "8139910|1646389|19246988" MGI:103186 606515 7SK +HGNC:30769 RN7SKL entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-09-05 +HGNC:42619 RN7SKP1 RNA, 7SK small nuclear pseudogene 1 pseudogene pseudogene Approved 13q13.3 13q13.3 2011-08-09 2013-03-19 100873845 ENSG00000202395 uc058wmo.1 NG_032625 +HGNC:42620 RN7SKP2 RNA, 7SK small nuclear pseudogene 2 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-08-09 2013-03-19 100873846 ENSG00000252812 uc021rio.1 NG_032626 +HGNC:42621 RN7SKP3 RNA, 7SK small nuclear pseudogene 3 pseudogene pseudogene Approved 13q14.12 13q14.12 2011-08-09 2013-03-19 100873847 ENSG00000223341 uc058wtq.1 NG_032627 +HGNC:42622 RN7SKP4 RNA, 7SK small nuclear pseudogene 4 pseudogene pseudogene Approved 13q14.12 13q14.12 2011-08-09 2015-01-29 100873848 ENSG00000271818 uc058wtr.1 NG_032628 +HGNC:42623 RN7SKP5 RNA, 7SK small nuclear pseudogene 5 pseudogene pseudogene Approved 13q14.13 13q14.13 2011-08-09 2013-03-19 100873849 ENSG00000252854 uc058wwn.1 NG_032629 +HGNC:42624 RN7SKP6 RNA, 7SK small nuclear pseudogene 6 pseudogene pseudogene Approved 13q21.1 13q21.1 2011-08-09 2013-03-19 100873850 ENSG00000201665 uc058xhx.1 NG_032630 +HGNC:42625 RN7SKP7 RNA, 7SK small nuclear pseudogene 7 pseudogene pseudogene Approved 13q32.1 13q32.1 2011-08-09 2013-03-19 100873851 ENSG00000222472 uc058xuw.1 NG_032631 +HGNC:42626 RN7SKP8 RNA, 7SK small nuclear pseudogene 8 pseudogene pseudogene Approved 13q32.2 13q32.2 2011-08-09 2013-03-19 100873852 ENSG00000222969 uc058xwm.1 NG_032632 +HGNC:42627 RN7SKP9 RNA, 7SK small nuclear pseudogene 9 pseudogene pseudogene Approved 13q32.3 13q32.3 2011-08-09 2013-03-19 100873853 ENSG00000201793 uc058xzb.1 NG_032633 +HGNC:42628 RN7SKP10 RNA, 7SK small nuclear pseudogene 10 pseudogene pseudogene Approved 13q34 13q34 2011-08-09 2013-03-19 100873873 ENSG00000201161 uc058yfg.1 NG_032646 +HGNC:45735 RN7SKP11 RNA, 7SK small nuclear pseudogene 11 pseudogene pseudogene Approved 12q23.1 12q23.1 2013-03-19 2013-03-19 106479099 ENSG00000252827 uc021rcb.1 NG_044898 +HGNC:45736 RN7SKP12 RNA, 7SK small nuclear pseudogene 12 pseudogene pseudogene Approved 1q43 01q43 2013-03-19 2013-03-19 106480836 ENSG00000252084 uc057qtw.1 NG_045853 +HGNC:45737 RN7SKP13 RNA, 7SK small nuclear pseudogene 13 pseudogene pseudogene Approved 4q34.3 04q34.3 2013-03-19 2013-03-19 106479100 ENSG00000251742 uc021xuv.1 NG_044908 +HGNC:45738 RN7SKP14 RNA, 7SK small nuclear pseudogene 14 pseudogene pseudogene Approved 17q22 17q22 2013-03-19 2013-03-19 106479101 ENSG00000251809 uc021uag.1 NG_044915 +HGNC:45739 RN7SKP15 RNA, 7SK small nuclear pseudogene 15 pseudogene pseudogene Approved 12p11.22 12p11.22 2013-03-19 2013-03-19 106480456 ENSG00000201612 uc058mgn.1 NG_043498 +HGNC:45740 RN7SKP16 RNA, 7SK small nuclear pseudogene 16 pseudogene pseudogene Approved 1p35.1 01p35.1 2013-03-19 2013-03-19 106480837 ENSG00000222112 uc021okx.1 NG_045860 +HGNC:45741 RN7SKP17 RNA, 7SK small nuclear pseudogene 17 pseudogene pseudogene Approved 14q24.3 14q24.3 2013-03-19 2013-03-19 106479102 ENSG00000223174 uc059drk.1 NG_045208 +HGNC:45742 RN7SKP18 RNA, 7SK small nuclear pseudogene 18 pseudogene pseudogene Approved 6q22.1 06q22.1 2013-03-19 2013-03-19 106480838 ENSG00000251814 uc063qyn.1 NG_044474 +HGNC:45743 RN7SKP19 RNA, 7SK small nuclear pseudogene 19 pseudogene pseudogene Approved 1p31.1 01p31.1 2013-03-19 2013-03-19 106479103 ENSG00000251825 uc057how.1 NG_044928 +HGNC:45744 RN7SKP20 RNA, 7SK small nuclear pseudogene 20 pseudogene pseudogene Approved Xp22.2 Xp22.2 2013-03-19 2013-03-19 106479104 ENSG00000199622 uc064yal.1 NG_045233 +HGNC:45745 RN7SKP21 RNA, 7SK small nuclear pseudogene 21 pseudogene pseudogene Approved 14q13.3 14q13.3 2013-03-19 2013-03-19 106480839 ENSG00000252312 uc059awo.1 NG_044480 +HGNC:45746 RN7SKP22 RNA, 7SK small nuclear pseudogene 22 pseudogene pseudogene Approved 19q13.11 19q13.11 2013-03-19 2013-03-19 106481805 ENSG00000201967 uc060wsl.1 NG_045685 +HGNC:45747 RN7SKP23 RNA, 7SK small nuclear pseudogene 23 pseudogene pseudogene Approved 16p12.2 16p12.2 2013-03-19 2015-01-29 106479105 ENSG00000280039 uc059sbe.1 NG_042907 +HGNC:45748 RN7SKP24 RNA, 7SK small nuclear pseudogene 24 pseudogene pseudogene Approved 9p13.3 09p13.3 2013-03-19 2013-03-19 106480840 ENSG00000251697 uc022bge.1 NG_045867 +HGNC:45749 RN7SKP25 RNA, 7SK small nuclear pseudogene 25 pseudogene pseudogene Approved 3q23 03q23 2013-03-19 2013-03-19 106480364 ENSG00000199319 uc062opj.1 NG_045978 +HGNC:45750 RN7SKP26 RNA, 7SK small nuclear pseudogene 26 pseudogene pseudogene Approved 18q21.1 18q21.1 2013-03-19 2013-03-19 106479106 ENSG00000222179 uc060otw.1 NG_045241 +HGNC:45751 RN7SKP27 RNA, 7SK small nuclear pseudogene 27 pseudogene pseudogene Approved 2p24.1 02p24.1 2013-03-19 2013-03-19 106480841 ENSG00000222616 uc061hai.1 NG_044493 +HGNC:45752 RN7SKP28 RNA, 7SK small nuclear pseudogene 28 pseudogene pseudogene Approved 4q22.3 04q22.3 2013-03-19 2013-03-19 106479107 ENSG00000201640 uc021xqg.2 NG_042920 +HGNC:45753 RN7SKP29 RNA, 7SK small nuclear pseudogene 29 pseudogene pseudogene Approved 8q13.3 08q13.3 2013-03-19 2013-03-19 106480457 ENSG00000222889 uc064nny.1 NG_043507 +HGNC:45754 RN7SKP30 RNA, 7SK small nuclear pseudogene 30 pseudogene pseudogene Approved 4q12 04q12 2013-03-19 2013-03-19 106479108 ENSG00000223305 uc021xom.1 NG_045249 +HGNC:45755 RN7SKP31 RNA, 7SK small nuclear pseudogene 31 pseudogene pseudogene Approved Xq26.3 Xq26.3 2013-03-19 2013-03-19 106480842 ENSG00000252163 uc065biy.1 NG_044503 +HGNC:45756 RN7SKP32 RNA, 7SK small nuclear pseudogene 32 pseudogene pseudogene Approved 8q11.1 08q11.1 2013-03-19 2013-03-19 106479109 ENSG00000222099 uc064moy.1 NG_042938 +HGNC:45757 RN7SKP33 RNA, 7SK small nuclear pseudogene 33 pseudogene pseudogene Approved 20q13.12 20q13.12 2013-03-19 2013-03-19 106480843 ENSG00000222874 uc061xni.1 NG_044513 +HGNC:45758 RN7SKP34 RNA, 7SK small nuclear pseudogene 34 pseudogene pseudogene Approved 5q14.3 05q14.3 2013-03-19 2013-03-19 106479110 ENSG00000251951 uc063fdn.1 NG_042946 +HGNC:45759 RN7SKP35 RNA, 7SK small nuclear pseudogene 35 pseudogene pseudogene Approved 4q31.3 04q31.3 2013-03-19 2013-03-19 106479111 ENSG00000253019 uc021xsw.1 NG_045261 +HGNC:45760 RN7SKP36 RNA, 7SK small nuclear pseudogene 36 pseudogene pseudogene Approved 4p16.1 04p16.1 2013-03-19 2013-03-19 106480458 ENSG00000200867 uc062uzl.1 NG_043516 +HGNC:45761 RN7SKP37 RNA, 7SK small nuclear pseudogene 37 pseudogene pseudogene Approved 10p12.31 10p12.31 2013-03-19 2013-03-19 106480844 ENSG00000201364 uc057sel.1 NG_044521 +HGNC:45762 RN7SKP38 RNA, 7SK small nuclear pseudogene 38 pseudogene pseudogene Approved 2q35 02q35 2013-03-19 2013-03-19 106479112 ENSG00000222714 uc061slw.1 NG_045007 +HGNC:45763 RN7SKP39 RNA, 7SK small nuclear pseudogene 39 pseudogene pseudogene Approved 10p12.1 10p12.1 2013-03-19 2013-03-19 106480845 ENSG00000222705 uc057sle.1 NG_044530 +HGNC:45764 RN7SKP40 RNA, 7SK small nuclear pseudogene 40 pseudogene pseudogene Approved 3q26.31 03q26.31 2013-03-19 2013-03-19 106479113 ENSG00000253020 uc062qbe.1 NG_042970 +HGNC:45765 RN7SKP41 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45766 RN7SKP42 RNA, 7SK small nuclear pseudogene 42 pseudogene pseudogene Approved 2q32.1 02q32.1 2013-03-19 2013-03-19 106480846 ENSG00000222845 uc061qmj.1 NG_044536 +HGNC:45767 RN7SKP43 RNA, 7SK small nuclear pseudogene 43 pseudogene pseudogene Approved 2q35 02q35 2013-03-19 2013-03-19 106481806 ENSG00000251982 uc061sgs.1 NG_044027 +HGNC:45768 RN7SKP44 RNA, 7SK small nuclear pseudogene 44 pseudogene pseudogene Approved 18q12.1 18q12.1 2013-03-19 2013-03-19 106479114 ENSG00000200472 uc060ogc.1 NG_042980 +HGNC:45769 RN7SKP45 RNA, 7SK small nuclear pseudogene 45 pseudogene pseudogene Approved 3p14.3 03p14.3 2013-03-19 2013-03-19 106479115 ENSG00000200379 uc062kuo.1 NG_042987 +HGNC:45770 RN7SKP46 RNA, 7SK small nuclear pseudogene 46 pseudogene pseudogene Approved 3q25.32 03q25.32 2013-03-19 2013-03-19 106480847 ENSG00000251751 uc021xgl.1 NG_044544 +HGNC:45771 RN7SKP47 RNA, 7SK small nuclear pseudogene 47 pseudogene pseudogene Approved 9q21.13 09q21.13 2013-03-19 2013-03-19 106481974 ENSG00000202217 uc022bic.1 NG_043366 +HGNC:45772 RN7SKP48 RNA, 7SK small nuclear pseudogene 48 pseudogene pseudogene Approved 4q21.23 04q21.23 2013-03-19 2013-03-19 106479116 ENSG00000201901 uc062xxt.1 NG_042996 +HGNC:45773 RN7SKP49 RNA, 7SK small nuclear pseudogene 49 pseudogene pseudogene Approved 1q42.11 01q42.11 2013-03-19 2013-03-19 106480848 ENSG00000252484 uc021pjn.1 NG_044551 +HGNC:45774 RN7SKP50 RNA, 7SK small nuclear pseudogene 50 pseudogene pseudogene Approved 11p15.4 11p15.4 2013-03-19 2013-03-19 106480459 ENSG00000201564 uc057yyl.1 NG_045481 +HGNC:45775 RN7SKP51 RNA, 7SK small nuclear pseudogene 51 pseudogene pseudogene Approved 6q22.1 06q22.1 2013-03-19 2013-03-19 106479117 ENSG00000222713 uc021zee.1 NG_043006 +HGNC:45776 RN7SKP52 RNA, 7SK small nuclear pseudogene 52 pseudogene pseudogene Approved 3q26.32 03q26.32 2013-03-19 2013-03-19 106479118 ENSG00000252028 uc062qcr.1 NG_043013 +HGNC:45777 RN7SKP53 RNA, 7SK small nuclear pseudogene 53 pseudogene pseudogene Approved 11q22.1 11q22.1 2013-03-19 2013-03-19 106480849 ENSG00000223269 uc058gtd.1 NG_045895 +HGNC:45778 RN7SKP54 RNA, 7SK small nuclear pseudogene 54 pseudogene pseudogene Approved 7q22.1 07q22.1 2013-03-19 2013-03-19 107080626 ENSG00000222636 uc064gka.1 NG_046390 +HGNC:45779 RN7SKP55 RNA, 7SK small nuclear pseudogene 55 pseudogene pseudogene Approved 1q44 01q44 2013-03-19 2013-03-19 106479119 ENSG00000201758 uc057qxe.1 NG_043023 +HGNC:45780 RN7SKP56 RNA, 7SK small nuclear pseudogene 56 pseudogene pseudogene Approved 6q22.32 06q22.32 2013-03-19 2013-03-19 106481807 ENSG00000222445 uc063rdr.1 NG_045688 +HGNC:45781 RN7SKP57 RNA, 7SK small nuclear pseudogene 57 pseudogene pseudogene Approved 5q22.1 05q22.1 2013-03-19 2013-03-19 106479120 ENSG00000253057 uc021yci.1 NG_043030 +HGNC:45782 RN7SKP58 RNA, 7SK small nuclear pseudogene 58 pseudogene pseudogene Approved 3p22.1 03p22.1 2013-03-19 2013-03-19 106480850 ENSG00000222942 uc062imu.1 NG_045898 +HGNC:45783 RN7SKP59 RNA, 7SK small nuclear pseudogene 59 pseudogene pseudogene Approved 9q21.2 09q21.2 2013-03-19 2013-03-19 106479121 ENSG00000222452 uc064tvq.1 NG_043041 +HGNC:45784 RN7SKP60 RNA, 7SK small nuclear pseudogene 60 pseudogene pseudogene Approved 5q34 05q34 2013-03-19 2013-03-19 106480851 ENSG00000252794 uc021yhh.1 NG_044575 +HGNC:45785 RN7SKP61 RNA, 7SK small nuclear pseudogene 61 pseudogene pseudogene Approved 3p12.3 03p12.3 2013-03-19 2013-03-19 106479122 ENSG00000222574 uc062lqd.1 NG_043051 +HGNC:45786 RN7SKP62 RNA, 7SK small nuclear pseudogene 62 pseudogene pseudogene Approved 5q21.1 05q21.1 2013-03-19 2013-03-19 106480460 ENSG00000207269 uc063fsq.1 NG_043533 +HGNC:45787 RN7SKP63 RNA, 7SK small nuclear pseudogene 63 pseudogene pseudogene Approved 22q11.21 22q11.21 2013-03-19 2013-03-19 106479123 ENSG00000200057 uc021wmf.1 NG_045295 +HGNC:45788 RN7SKP64 RNA, 7SK small nuclear pseudogene 64 pseudogene pseudogene Approved 5q31.2 05q31.2 2013-03-19 2013-03-19 106480852 ENSG00000253015 uc063hqk.1 NG_044585 +HGNC:45789 RN7SKP65 RNA, 7SK small nuclear pseudogene 65 pseudogene pseudogene Approved 12q14.1 12q14.1 2013-03-19 2013-03-19 106479124 ENSG00000222210 uc058qej.1 NG_043068 +HGNC:45790 RN7SKP66 RNA, 7SK small nuclear pseudogene 66 pseudogene pseudogene Approved 2p21 02p21 2013-03-19 2013-03-19 106480853 ENSG00000252490 uc021vgp.1 NG_045182 +HGNC:45791 RN7SKP67 RNA, 7SK small nuclear pseudogene 67 pseudogene pseudogene Approved 4q35.1 04q35.1 2013-03-19 2013-03-19 106479125 ENSG00000251714 uc063bez.1 NG_043074 +HGNC:45792 RN7SKP68 RNA, 7SK small nuclear pseudogene 68 pseudogene pseudogene Approved 5q21.1 05q21.1 2013-03-19 2013-03-19 106480854 ENSG00000222987 uc063fsx.1 NG_044602 +HGNC:45793 RN7SKP69 RNA, 7SK small nuclear pseudogene 69 pseudogene pseudogene Approved 20p12.1 20p12.1 2013-03-19 2013-03-19 106480461 ENSG00000202260 uc021wav.1 NG_043540 +HGNC:45794 RN7SKP70 RNA, 7SK small nuclear pseudogene 70 pseudogene pseudogene Approved 5q35.3 05q35.3 2013-03-19 2013-03-19 107057644 ENSG00000252464 uc021yja.2 NG_046350 +HGNC:45795 RN7SKP71 RNA, 7SK small nuclear pseudogene 71 pseudogene pseudogene Approved 12q24.13 12q24.13 2013-03-19 2013-03-19 106479126 ENSG00000201428 uc058tlg.1 NG_043082 +HGNC:45796 RN7SKP72 RNA, 7SK small nuclear pseudogene 72 pseudogene pseudogene Approved 18p11.32 18p11.32 2013-03-19 2013-03-19 106481748 ENSG00000199197 uc060mvc.1 NG_045505 +HGNC:45797 RN7SKP73 RNA, 7SK small nuclear pseudogene 73 pseudogene pseudogene Approved 5p15.32 05p15.32 2013-03-19 2013-03-19 106480855 ENSG00000223007 uc063cby.1 NG_044612 +HGNC:45798 RN7SKP74 RNA, 7SK small nuclear pseudogene 74 pseudogene pseudogene Approved 20p11.23 20p11.23 2013-03-19 2013-03-19 106479127 ENSG00000199719 uc061vpt.1 NG_043092 +HGNC:45799 RN7SKP75 RNA, 7SK small nuclear pseudogene 75 pseudogene pseudogene Approved 7q11.22 07q11.22 2013-03-19 2013-03-19 106480856 ENSG00000199940 uc064edd.1 NG_044620 +HGNC:45800 RN7SKP76 RNA, 7SK small nuclear pseudogene 76 pseudogene pseudogene Approved 16q21 16q21 2013-03-19 2013-03-19 106481808 ENSG00000201289 uc059vfk.1 NG_045692 +HGNC:45801 RN7SKP77 RNA, 7SK small nuclear pseudogene 77 pseudogene pseudogene Approved 9q31.2 09q31.2 2013-03-19 2013-03-19 106479128 ENSG00000200131 uc064uxs.1 NG_043100 +HGNC:45802 RN7SKP78 RNA, 7SK small nuclear pseudogene 78 pseudogene pseudogene Approved 10p15.1 10p15.1 2013-03-19 2013-03-19 106479129 ENSG00000201581 uc057rmr.1 NG_045317 +HGNC:45803 RN7SKP79 RNA, 7SK small nuclear pseudogene 79 pseudogene pseudogene Approved 5p15.31 05p15.31 2013-03-19 2013-03-19 106480857 ENSG00000200243 uc063cdg.1 NG_044628 +HGNC:45804 RN7SKP80 RNA, 7SK small nuclear pseudogene 80 pseudogene pseudogene Approved 22q13.2 22q13.2 2013-03-19 2013-03-19 106479130 ENSG00000202058 uc062evx.1 NG_045320 +HGNC:45805 RN7SKP81 RNA, 7SK small nuclear pseudogene 81 pseudogene pseudogene Approved Xq27.3 Xq27.3 2013-03-19 2013-03-19 106480858 ENSG00000202473 uc022cfk.1 NG_044636 +HGNC:45806 RN7SKP82 RNA, 7SK small nuclear pseudogene 82 pseudogene pseudogene Approved 4p13 04p13 2013-03-19 2013-03-19 106480462 ENSG00000252595 uc021xnw.1 NG_043550 +HGNC:45807 RN7SKP83 RNA, 7SK small nuclear pseudogene 83 pseudogene pseudogene Approved 2p11.2 02p11.2 2013-03-19 2013-03-19 106479131 ENSG00000252321 uc061ljw.1 NG_045019 +HGNC:45808 RN7SKP84 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45809 RN7SKP85 RNA, 7SK small nuclear pseudogene 85 pseudogene pseudogene Approved 8q22.2 08q22.2 2013-03-19 2013-03-19 106479132 ENSG00000223281 uc022azc.1 NG_043134 +HGNC:45810 RN7SKP86 RNA, 7SK small nuclear pseudogene 86 pseudogene pseudogene Approved 7q22.1 07q22.1 2013-03-19 2013-03-19 106480859 ENSG00000222386 uc022ajs.1 NG_045926 +HGNC:45811 RN7SKP87 RNA, 7SK small nuclear pseudogene 87 pseudogene pseudogene Approved 9q31.1 09q31.1 2013-03-19 2013-03-19 106479133 ENSG00000200966 uc064uvc.1 NG_043142 +HGNC:45812 RN7SKP88 RNA, 7SK small nuclear pseudogene 88 pseudogene pseudogene Approved 1q21.1 01q21.1 2013-03-19 2013-03-19 106480860 ENSG00000252656 uc057kig.1 NG_044649 +HGNC:45813 RN7SKP89 RNA, 7SK small nuclear pseudogene 89 pseudogene pseudogene Approved 5q22.3 05q22.3 2013-03-19 2013-03-19 106479134 ENSG00000222706 uc021yco.1 NG_043151 +HGNC:45814 RN7SKP90 RNA, 7SK small nuclear pseudogene 90 pseudogene pseudogene Approved 11p15.1 11p15.1 2013-03-19 2013-03-19 106481809 ENSG00000199883 uc057zlb.1 NG_044051 +HGNC:45815 RN7SKP91 RNA, 7SK small nuclear pseudogene 91 pseudogene pseudogene Approved 1p35.2 01p35.2 2013-03-19 2013-03-19 106480861 ENSG00000222784 uc057ecl.1 NG_044656 +HGNC:45816 RN7SKP92 RNA, 7SK small nuclear pseudogene 92 pseudogene pseudogene Approved 14q32.2 14q32.2 2013-03-19 2013-03-19 106479135 ENSG00000253075 uc021sbr.1 NG_045341 +HGNC:45817 RN7SKP93 RNA, 7SK small nuclear pseudogene 93 pseudogene pseudogene Approved 2q21.2 02q21.2 2013-03-19 2013-03-19 106479136 ENSG00000200708 uc061nye.1 NG_043166 +HGNC:45818 RN7SKP94 RNA, 7SK small nuclear pseudogene 94 pseudogene pseudogene Approved 17q22 17q22 2013-03-19 2013-03-19 106480365 ENSG00000222976 uc021ual.1 NG_044788 +HGNC:45819 RN7SKP95 RNA, 7SK small nuclear pseudogene 95 pseudogene pseudogene Approved 15q21.3 15q21.3 2013-03-19 2013-03-19 106480862 ENSG00000199730 uc059jsd.1 NG_045937 +HGNC:45820 RN7SKP96 RNA, 7SK small nuclear pseudogene 96 pseudogene pseudogene Approved 4q21.3 04q21.3 2013-03-19 2013-03-19 106479137 ENSG00000252757 uc021xpt.1 NG_045350 +HGNC:45821 RN7SKP97 RNA, 7SK small nuclear pseudogene 97 pseudogene pseudogene Approved 8q12.3 08q12.3 2013-03-19 2013-03-19 106480463 ENSG00000222898 uc022auz.1 NG_045491 +HGNC:45822 RN7SKP98 RNA, 7SK small nuclear pseudogene 98 pseudogene pseudogene Approved 1q32.3 01q32.3 2013-03-19 2013-03-19 106480863 ENSG00000252879 uc057pfc.1 NG_044669 +HGNC:45823 RN7SKP99 RNA, 7SK small nuclear pseudogene 99 pseudogene pseudogene Approved 14q23.1 14q23.1 2013-03-19 2013-03-19 106479138 ENSG00000252837 uc059bxl.1 NG_045353 +HGNC:45824 RN7SKP100 RNA, 7SK small nuclear pseudogene 100 pseudogene pseudogene Approved 20q12 20q12 2013-03-19 2013-03-19 106479139 ENSG00000223190 uc021wdw.1 NG_043191 +HGNC:45825 RN7SKP101 RNA, 7SK small nuclear pseudogene 101 pseudogene pseudogene Approved 15q21.1 15q21.1 2013-03-19 2013-03-19 106480864 ENSG00000223308 uc059ivw.1 NG_044675 +HGNC:45826 RN7SKP102 RNA, 7SK small nuclear pseudogene 102 pseudogene pseudogene Approved 2q14.3 02q14.3 2013-03-19 2013-03-19 106481810 ENSG00000223118 uc061nmu.1 NG_044060 +HGNC:45827 RN7SKP103 RNA, 7SK small nuclear pseudogene 103 pseudogene pseudogene Approved 2q21.2 02q21.2 2013-03-19 2013-03-19 106479140 ENSG00000200718 uc061nxn.1 NG_045359 +HGNC:45828 RN7SKP104 RNA, 7SK small nuclear pseudogene 104 pseudogene pseudogene Approved 7q21.3 07q21.3 2013-03-19 2013-03-19 106480865 ENSG00000199475 uc064fpu.1 NG_044685 +HGNC:45829 RN7SKP105 RNA, 7SK small nuclear pseudogene 105 pseudogene pseudogene Approved 4q32.3 04q32.3 2013-03-19 2013-03-19 106479141 ENSG00000253001 uc021xtx.1 NG_045363 +HGNC:45830 RN7SKP106 RNA, 7SK small nuclear pseudogene 106 pseudogene pseudogene Approved 6q24.1 06q24.1 2013-03-19 2013-03-19 106479142 ENSG00000222764 uc021zgf.1 NG_043216 +HGNC:45831 RN7SKP107 RNA, 7SK small nuclear pseudogene 107 pseudogene pseudogene Approved 14q32.11 14q32.11 2013-03-19 2013-03-19 106480464 ENSG00000201027 uc021ryi.1 NG_043568 +HGNC:45832 RN7SKP108 RNA, 7SK small nuclear pseudogene 108 pseudogene pseudogene Approved 14q32.2 14q32.2 2013-03-19 2013-03-19 106480866 ENSG00000223299 uc059exw.1 NG_044693 +HGNC:45833 RN7SKP109 RNA, 7SK small nuclear pseudogene 109 pseudogene pseudogene Approved 19q13.42 19q13.42 2013-03-19 2013-03-19 106479143 ENSG00000222524 uc061dcy.1 NG_043227 +HGNC:45834 RN7SKP110 RNA, 7SK small nuclear pseudogene 110 pseudogene pseudogene Approved 6q15 06q15 2013-03-19 2013-03-19 106480867 ENSG00000222078 uc021zcs.1 NG_045955 +HGNC:45835 RN7SKP111 RNA, 7SK small nuclear pseudogene 111 pseudogene pseudogene Approved 20p12.2 20p12.2 2013-03-19 2013-03-19 106479144 ENSG00000222281 uc061vkl.1 NG_045370 +HGNC:45836 RN7SKP112 RNA, 7SK small nuclear pseudogene 112 pseudogene pseudogene Approved 2p25.1 02p25.1 2013-03-19 2013-03-19 106479145 ENSG00000223145 uc061gkq.1 NG_043247 +HGNC:45837 RN7SKP113 RNA, 7SK small nuclear pseudogene 113 pseudogene pseudogene Approved 4p16.2 04p16.2 2013-03-19 2013-03-19 106480465 ENSG00000200761 uc021xkx.1 NG_043576 +HGNC:45838 RN7SKP114 RNA, 7SK small nuclear pseudogene 114 pseudogene pseudogene Approved 9p13.3 09p13.3 2013-03-19 2013-03-19 106480868 ENSG00000222259 uc064srh.1 NG_045956 +HGNC:45839 RN7SKP115 RNA, 7SK small nuclear pseudogene 115 pseudogene pseudogene Approved 11q22.1 11q22.1 2013-03-19 2013-03-19 106479146 ENSG00000200047 uc058gts.1 NG_045375 +HGNC:45840 RN7SKP116 RNA, 7SK small nuclear pseudogene 116 pseudogene pseudogene Approved 6p12.3 06p12.3 2013-03-19 2013-03-19 106480869 ENSG00000252711 uc021zaf.1 NG_045960 +HGNC:45841 RN7SKP117 RNA, 7SK small nuclear pseudogene 117 pseudogene pseudogene Approved 5q23.2 05q23.2 2013-03-19 2013-03-19 106479147 ENSG00000222107 uc063gmy.1 NG_043267 +HGNC:45842 RN7SKP118 RNA, 7SK small nuclear pseudogene 118 pseudogene pseudogene Approved 16q22.1 16q22.1 2013-03-19 2013-03-19 106633802 ENSG00000201201 uc059vtf.1 NG_042878 +HGNC:45843 RN7SKP119 RNA, 7SK small nuclear pseudogene 119 pseudogene pseudogene Approved 2p21 02p21 2013-03-19 2013-03-19 106481749 ENSG00000222685 uc061iyd.1 NG_045074 +HGNC:45844 RN7SKP120 RNA, 7SK small nuclear pseudogene 120 pseudogene pseudogene Approved 9p21.3 09p21.3 2013-03-19 2013-03-19 106480870 ENSG00000222693 uc064slg.1 NG_044731 +HGNC:45845 RN7SKP121 RNA, 7SK small nuclear pseudogene 121 pseudogene pseudogene Approved 11q24.2 11q24.2 2013-03-19 2013-03-19 106481811 ENSG00000222774 uc021qsa.1 NG_044069 +HGNC:45846 RN7SKP122 RNA, 7SK small nuclear pseudogene 122 pseudogene pseudogene Approved 5q21.3 05q21.3 2013-03-19 2013-03-19 106479148 ENSG00000251732 uc021ycc.1 NG_043276 +HGNC:45847 RN7SKP123 RNA, 7SK small nuclear pseudogene 123 pseudogene pseudogene Approved 1p22.1 01p22.1 2013-03-19 2013-03-19 106479149 ENSG00000222664 uc057iii.1 NG_043286 +HGNC:45848 RN7SKP124 RNA, 7SK small nuclear pseudogene 124 pseudogene pseudogene Approved 3q23 03q23 2013-03-19 2013-03-19 106480871 ENSG00000201600 uc062ojp.1 NG_045964 +HGNC:45849 RN7SKP125 RNA, 7SK small nuclear pseudogene 125 pseudogene pseudogene Approved 9q33.1 09q33.1 2013-03-19 2013-03-19 106479150 ENSG00000222413 uc022bmq.1 NG_043294 +HGNC:45850 RN7SKP126 RNA, 7SK small nuclear pseudogene 126 pseudogene pseudogene Approved 1q31.2 01q31.2 2013-03-19 2013-03-19 106480872 ENSG00000223075 uc021pgn.1 NG_044747 +HGNC:45851 RN7SKP127 RNA, 7SK small nuclear pseudogene 127 pseudogene pseudogene Approved 16p11.2 16p11.2 2013-03-19 2013-03-19 106480466 ENSG00000222375 uc059stv.1 NG_043584 +HGNC:45852 RN7SKP128 RNA, 7SK small nuclear pseudogene 128 pseudogene pseudogene Approved 9q33.1 09q33.1 2013-03-19 2013-03-19 106479151 ENSG00000201140 uc064vhr.1 NG_043300 +HGNC:45853 RN7SKP129 RNA, 7SK small nuclear pseudogene 129 pseudogene pseudogene Approved 7q21.3 07q21.3 2013-03-19 2013-03-19 106479152 ENSG00000222220 uc064fmd.1 NG_043309 +HGNC:45854 RN7SKP130 RNA, 7SK small nuclear pseudogene 130 pseudogene pseudogene Approved 7p22.2 07p22.2 2013-03-19 2013-03-19 106480873 ENSG00000201794 uc064bbs.1 NG_044756 +HGNC:45855 RN7SKP131 RNA, 7SK small nuclear pseudogene 131 pseudogene pseudogene Approved 22q11.21 22q11.21 2013-03-19 2015-02-12 106479153 ENSG00000222630 uc021wlw.1 NG_043317 +HGNC:45856 RN7SKP132 RNA, 7SK small nuclear pseudogene 132 pseudogene pseudogene Approved 10p12.1 10p12.1 2013-03-19 2013-03-19 106480874 ENSG00000251810 uc057sko.1 NG_044763 +HGNC:45857 RN7SKP133 RNA, 7SK small nuclear pseudogene 133 pseudogene pseudogene Approved 5p15.1 05p15.1 2013-03-19 2013-03-19 106481812 ENSG00000201715 uc063cni.1 NG_044078 +HGNC:45858 RN7SKP134 RNA, 7SK small nuclear pseudogene 134 pseudogene pseudogene Approved 12p13.1 12p13.1 2013-03-19 2013-03-19 106479154 ENSG00000200830 uc058lmj.1 NG_045402 +HGNC:45859 RN7SKP135 RNA, 7SK small nuclear pseudogene 135 pseudogene pseudogene Approved 8q12.3 08q12.3 2013-03-19 2013-03-19 106480875 ENSG00000252358 uc022avb.1 NG_044772 +HGNC:45860 RN7SKP136 RNA, 7SK small nuclear pseudogene 136 pseudogene pseudogene Approved 4q34.3 04q34.3 2013-03-19 2013-03-19 106479155 ENSG00000222859 uc021xus.1 NG_043335 +HGNC:45861 RN7SKP137 RNA, 7SK small nuclear pseudogene 137 pseudogene pseudogene Approved 4q27 04q27 2013-03-19 2013-03-19 106479156 ENSG00000223006 uc021xri.1 NG_045407 +HGNC:45863 RN7SKP139 RNA, 7SK small nuclear pseudogene 139 pseudogene pseudogene Approved 15q21.1 15q21.1 2013-03-19 2013-03-19 106480876 ENSG00000222343 uc059iwa.1 NG_045979 +HGNC:45864 RN7SKP140 RNA, 7SK small nuclear pseudogene 140 pseudogene pseudogene Approved 20p11.22 20p11.22 2013-03-19 2013-03-19 106480366 ENSG00000223128 uc061vue.1 NG_045984 +HGNC:45865 RN7SKP141 RNA, 7SK small nuclear pseudogene 141 pseudogene pseudogene Approved 2q22.1 02q22.1 2013-03-19 2013-03-19 106479157 ENSG00000251976 uc021vqa.1 NG_043351 +HGNC:45866 RN7SKP142 RNA, 7SK small nuclear pseudogene 142 pseudogene pseudogene Approved 16q12.1 16q12.1 2013-03-19 2013-03-19 106480877 ENSG00000223168 uc021tig.1 NG_044789 +HGNC:45867 RN7SKP143 RNA, 7SK small nuclear pseudogene 143 pseudogene pseudogene Approved 10q23.31 10q23.31 2013-03-19 2013-03-19 106479158 ENSG00000222451 uc057uuv.1 NG_043358 +HGNC:45868 RN7SKP144 RNA, 7SK small nuclear pseudogene 144 pseudogene pseudogene Approved 3p26.3 03p26.3 2013-03-19 2013-03-19 106479159 ENSG00000223040 uc062gbk.1 NG_043367 +HGNC:45869 RN7SKP145 RNA, 7SK small nuclear pseudogene 145 pseudogene pseudogene Approved 5q32 05q32 2013-03-19 2013-03-19 106480878 ENSG00000200161 uc063imz.1 NG_044797 +HGNC:45870 RN7SKP146 RNA, 7SK small nuclear pseudogene 146 pseudogene pseudogene Approved 18p11.32 18p11.32 2013-03-19 2013-03-19 106479160 ENSG00000222174 uc060mss.1 NG_043372 +HGNC:45871 RN7SKP147 RNA, 7SK small nuclear pseudogene 147 pseudogene pseudogene Approved 21q21.1 21q21.1 2013-03-19 2013-03-19 106480879 ENSG00000252963 uc061zfh.1 NG_044805 +HGNC:45872 RN7SKP148 RNA, 7SK small nuclear pseudogene 148 pseudogene pseudogene Approved 5q35.2 05q35.2 2013-03-19 2013-03-19 106480467 ENSG00000222111 uc063jvn.1 NG_043594 +HGNC:45873 RN7SKP149 RNA, 7SK small nuclear pseudogene 149 pseudogene pseudogene Approved Xq27.3 Xq27.3 2013-03-19 2013-03-19 106479161 ENSG00000199878 uc065bkr.1 NG_043379 +HGNC:45874 RN7SKP150 RNA, 7SK small nuclear pseudogene 150 pseudogene pseudogene Approved 5q35.3 05q35.3 2013-03-19 2013-03-19 106480880 ENSG00000222448 uc063krw.1 NG_044814 +HGNC:45875 RN7SKP151 RNA, 7SK small nuclear pseudogene 151 pseudogene pseudogene Approved 11p15.2 11p15.2 2013-03-19 2013-03-19 106479162 ENSG00000222162 uc021qea.1 NG_045430 +HGNC:45876 RN7SKP152 RNA, 7SK small nuclear pseudogene 152 pseudogene pseudogene Approved 2q24.3 02q24.3 2013-03-19 2013-03-19 106479163 ENSG00000222376 uc061pfk.1 NG_043397 +HGNC:45877 RN7SKP153 RNA, 7SK small nuclear pseudogene 153 pseudogene pseudogene Approved 8q24.12 08q24.12 2013-03-19 2013-03-19 106481813 ENSG00000201896 uc064ptw.1 NG_044084 +HGNC:45878 RN7SKP154 RNA, 7SK small nuclear pseudogene 154 pseudogene pseudogene Approved 2q21.2 02q21.2 2013-03-19 2013-03-19 106480881 ENSG00000222068 uc061nyb.1 NG_045995 +HGNC:45879 RN7SKP155 RNA, 7SK small nuclear pseudogene 155 pseudogene pseudogene Approved 8q24.13 08q24.13 2013-03-19 2013-03-19 106479164 ENSG00000251840 uc022bap.1 NG_043403 +HGNC:45880 RN7SKP156 RNA, 7SK small nuclear pseudogene 156 pseudogene pseudogene Approved 1q31.1 01q31.1 2013-03-19 2013-03-19 106480882 ENSG00000222240 uc057nzx.1 NG_044830 +HGNC:45881 RN7SKP157 RNA, 7SK small nuclear pseudogene 157 pseudogene pseudogene Approved 5q12.1 05q12.1 2013-03-19 2013-03-19 106479165 ENSG00000251983 uc063dxj.1 NG_043412 +HGNC:45882 RN7SKP158 RNA, 7SK small nuclear pseudogene 158 pseudogene pseudogene Approved 11p14.1 11p14.1 2013-03-19 2013-03-19 106480883 ENSG00000222385 uc057zyz.1 NG_044839 +HGNC:45883 RN7SKP159 RNA, 7SK small nuclear pseudogene 159 pseudogene pseudogene Approved 8p23.2 08p23.2 2013-03-19 2013-03-19 106480468 ENSG00000222589 uc022aqs.1 NG_043601 +HGNC:45884 RN7SKP160 RNA, 7SK small nuclear pseudogene 160 pseudogene pseudogene Approved 1q25.1 01q25.1 2013-03-19 2013-03-19 106479166 ENSG00000200674 uc057njm.1 NG_043421 +HGNC:45885 RN7SKP161 RNA, 7SK small nuclear pseudogene 161 pseudogene pseudogene Approved 12p13.2 12p13.2 2013-03-19 2013-03-19 106479167 ENSG00000223042 uc058lbu.1 NG_045446 +HGNC:45886 RN7SKP162 RNA, 7SK small nuclear pseudogene 162 pseudogene pseudogene Approved 12p13.1 12p13.1 2013-03-19 2013-03-19 106480884 ENSG00000200475 uc021qvo.1 NG_044848 +HGNC:45887 RN7SKP163 RNA, 7SK small nuclear pseudogene 163 pseudogene pseudogene Approved 6q14.1 06q14.1 2013-03-19 2013-03-19 106479168 ENSG00000200091 uc063pqz.1 NG_043437 +HGNC:45888 RN7SKP164 RNA, 7SK small nuclear pseudogene 164 pseudogene pseudogene Approved 2p12 02p12 2013-03-19 2013-03-19 106480885 ENSG00000251947 uc061lbn.1 NG_044856 +HGNC:45889 RN7SKP165 RNA, 7SK small nuclear pseudogene 165 pseudogene pseudogene Approved 1q42.12 01q42.12 2013-03-19 2013-03-19 106480367 ENSG00000223282 uc057pys.1 NG_044804 +HGNC:45890 RN7SKP166 RNA, 7SK small nuclear pseudogene 166 pseudogene pseudogene Approved 12q14.3 12q14.3 2013-03-19 2013-03-19 106481814 ENSG00000222744 uc058qmz.1 NG_044095 +HGNC:45891 RN7SKP167 RNA, 7SK small nuclear pseudogene 167 pseudogene pseudogene Approved 10q26.13 10q26.13 2013-03-19 2013-03-19 106479169 ENSG00000222979 uc057wks.1 NG_043444 +HGNC:45892 RN7SKP168 RNA, 7SK small nuclear pseudogene 168 pseudogene pseudogene Approved 2p24.2 02p24.2 2013-03-19 2013-03-19 106479170 ENSG00000222842 uc021veg.1 NG_043455 +HGNC:45893 RN7SKP169 RNA, 7SK small nuclear pseudogene 169 pseudogene pseudogene Approved 22q12.1 22q12.1 2013-03-19 2013-03-19 106480886 ENSG00000223056 uc062col.1 NG_044867 +HGNC:45894 RN7SKP170 RNA, 7SK small nuclear pseudogene 170 pseudogene pseudogene Approved 4p15.33 04p15.33 2013-03-19 2013-03-19 106479171 ENSG00000199420 uc062vgr.1 NG_045457 +HGNC:45895 RN7SKP171 RNA, 7SK small nuclear pseudogene 171 pseudogene pseudogene Approved 9p13.2 09p13.2 2013-03-19 2013-03-19 106480887 ENSG00000201287 uc064tda.1 NG_046019 +HGNC:45896 RN7SKP172 RNA, 7SK small nuclear pseudogene 172 pseudogene pseudogene Approved 12q21.2 12q21.2 2013-03-19 2013-03-19 106480469 ENSG00000223273 uc058rdt.1 NG_043608 +HGNC:45897 RN7SKP173 RNA, 7SK small nuclear pseudogene 173 pseudogene pseudogene Approved 20q11.23 20q11.23 2013-03-19 2013-03-19 106635535 ENSG00000199691 uc061wzd.1 NG_042887 +HGNC:45898 RN7SKP174 RNA, 7SK small nuclear pseudogene 174 pseudogene pseudogene Approved 7q35 07q35 2013-03-19 2013-03-19 106479172 ENSG00000200673 uc064iyk.1 NG_043467 +HGNC:45899 RN7SKP175 RNA, 7SK small nuclear pseudogene 175 pseudogene pseudogene Approved 8q24.3 08q24.3 2013-03-19 2015-01-29 106479173 ENSG00000275558 uc064qyx.1 NG_043474 +HGNC:45900 RN7SKP176 RNA, 7SK small nuclear pseudogene 176 pseudogene pseudogene Approved 16q23.3 16q23.3 2013-03-19 2015-01-29 106635536 ENSG00000260682 uc021tlu.1 NG_042888 +HGNC:45901 RN7SKP177 RNA, 7SK small nuclear pseudogene 177 pseudogene pseudogene Approved 3q25.31 03q25.31 2013-03-19 2013-03-19 106479174 ENSG00000222499 uc062phh.1 NG_045467 +HGNC:45902 RN7SKP178 RNA, 7SK small nuclear pseudogene 178 pseudogene pseudogene Approved 2q33.3 02q33.3 2013-03-19 2013-03-19 106479175 ENSG00000201875 uc061rso.1 NG_045063 +HGNC:45903 RN7SKP179 RNA, 7SK small nuclear pseudogene 179 pseudogene pseudogene Approved 2q32.2 02q32.2 2013-03-19 2013-03-19 106481815 ENSG00000251935 uc021vuc.1 NG_044105 +HGNC:45904 RN7SKP180 RNA, 7SK small nuclear pseudogene 180 pseudogene pseudogene Approved 17q24.3 17q24.3 2013-03-19 2013-03-19 106480888 ENSG00000200783 uc060jku.1 NG_046022 +HGNC:45905 RN7SKP181 RNA, 7SK small nuclear pseudogene 181 pseudogene pseudogene Approved 15q26.2 15q26.2 2013-03-19 2013-03-19 106479176 ENSG00000223120 uc059nqw.1 NG_043495 +HGNC:45906 RN7SKP182 RNA, 7SK small nuclear pseudogene 182 pseudogene pseudogene Approved 18q12.2 18q12.2 2013-03-19 2013-03-19 106479177 ENSG00000222704 uc060oqm.1 NG_043502 +HGNC:45907 RN7SKP183 RNA, 7SK small nuclear pseudogene 183 pseudogene pseudogene Approved Xp22.12 Xp22.12 2013-03-19 2013-03-19 106480889 ENSG00000252978 uc022bts.1 NG_044888 +HGNC:45908 RN7SKP184 RNA, 7SK small nuclear pseudogene 184 pseudogene pseudogene Approved 20q13.2 20q13.2 2013-03-19 2013-03-19 106480470 ENSG00000199218 uc021wew.1 NG_045509 +HGNC:45909 RN7SKP185 RNA, 7SK small nuclear pseudogene 185 pseudogene pseudogene Approved 20q11.23 20q11.23 2013-03-19 2013-03-19 106479178 ENSG00000199683 uc061wwo.1 NG_045478 +HGNC:45910 RN7SKP186 RNA, 7SK small nuclear pseudogene 186 pseudogene pseudogene Approved 6p21.33 06p21.33 RN7SKP138 RNA, 7SK small nuclear pseudogene 138 2013-03-19 2016-01-13 106480692 ENSG00000202241 uc063mvc.1 NG_043345 +HGNC:45911 RN7SKP187 RNA, 7SK small nuclear pseudogene 187 pseudogene pseudogene Approved 7q31.1 07q31.1 2013-03-19 2013-03-19 106480890 ENSG00000202406 uc064hdj.1 NG_046028 +HGNC:45912 RN7SKP188 RNA, 7SK small nuclear pseudogene 188 pseudogene pseudogene Approved 4q32.3 04q32.3 2013-03-19 2013-03-19 106479179 ENSG00000222721 uc063ave.1 NG_043521 +HGNC:45913 RN7SKP189 RNA, 7SK small nuclear pseudogene 189 pseudogene pseudogene Approved Xq27.3 Xq27.3 2013-03-19 2013-03-19 106479180 ENSG00000201912 uc065bkv.1 NG_043528 +HGNC:45914 RN7SKP190 RNA, 7SK small nuclear pseudogene 190 pseudogene pseudogene Approved 16q23.3 16q23.3 2013-03-19 2013-03-19 106480891 ENSG00000251888 uc021tlv.1 NG_044903 +HGNC:45915 RN7SKP191 RNA, 7SK small nuclear pseudogene 191 pseudogene pseudogene Approved 9q31.1 09q31.1 2013-03-19 2013-03-19 106480471 ENSG00000201583 uc022blg.1 NG_043622 +HGNC:45916 RN7SKP192 RNA, 7SK small nuclear pseudogene 192 pseudogene pseudogene Approved 11q12.1 11q12.1 2013-03-19 2013-03-19 106480892 ENSG00000223223 uc058brt.1 NG_044912 +HGNC:45917 RN7SKP193 RNA, 7SK small nuclear pseudogene 193 pseudogene pseudogene Approved 14q21.3 14q21.3 2013-03-19 2013-03-19 106479181 ENSG00000201358 uc059bic.1 NG_043537 +HGNC:45918 RN7SKP194 RNA, 7SK small nuclear pseudogene 194 pseudogene pseudogene Approved Xq21.33 Xq21.33 2013-03-19 2013-03-19 106480893 ENSG00000223260 uc065aez.1 NG_044918 +HGNC:45919 RN7SKP195 RNA, 7SK small nuclear pseudogene 195 pseudogene pseudogene Approved 1q43 01q43 2013-03-19 2013-03-19 106481816 ENSG00000252396 uc021pkw.1 NG_045711 +HGNC:45920 RN7SKP196 RNA, 7SK small nuclear pseudogene 196 pseudogene pseudogene Approved 10q21.1 10q21.1 2013-03-19 2013-03-19 106479182 ENSG00000252076 uc057tjw.1 NG_043546 +HGNC:45921 RN7SKP197 RNA, 7SK small nuclear pseudogene 197 pseudogene pseudogene Approved 12q24.23 12q24.23 2013-03-19 2013-03-19 106480894 ENSG00000252886 uc021req.1 NG_045209 +HGNC:45922 RN7SKP198 RNA, 7SK small nuclear pseudogene 198 pseudogene pseudogene Approved 7q22.1 07q22.1 2013-03-19 2013-03-19 106479183 ENSG00000238324 uc064gpx.1 NG_045067 +HGNC:45923 RN7SKP199 RNA, 7SK small nuclear pseudogene 199 pseudogene pseudogene Approved 4p12 04p12 2013-03-19 2013-03-19 106479184 ENSG00000222257 uc062wih.1 NG_043563 +HGNC:45924 RN7SKP200 RNA, 7SK small nuclear pseudogene 200 pseudogene pseudogene Approved 2q33.3 02q33.3 2013-03-19 2013-03-19 106480895 ENSG00000222496 uc061rtq.1 NG_045210 +HGNC:45925 RN7SKP201 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45926 RN7SKP202 RNA, 7SK small nuclear pseudogene 202 pseudogene pseudogene Approved 10q21.3 10q21.3 2013-03-19 2013-03-19 106480472 ENSG00000222371 uc021prs.1 NG_045515 +HGNC:45927 RN7SKP203 RNA, 7SK small nuclear pseudogene 203 pseudogene pseudogene Approved 2p12 02p12 2013-03-19 2013-03-19 106479185 ENSG00000200488 uc061lbm.1 NG_043572 +HGNC:45928 RN7SKP204 RNA, 7SK small nuclear pseudogene 204 pseudogene pseudogene Approved 6p23 06p23 2013-03-19 2013-03-19 106480896 ENSG00000202351 uc063lyn.1 NG_045005 +HGNC:45929 RN7SKP205 RNA, 7SK small nuclear pseudogene 205 pseudogene pseudogene Approved 14q11.2 14q11.2 2013-03-19 2013-03-19 106479186 ENSG00000222931 uc058zts.1 NG_043581 +HGNC:45930 RN7SKP206 RNA, 7SK small nuclear pseudogene 206 pseudogene pseudogene Approved 8q24.21 08q24.21 2013-03-19 2013-03-19 106479187 ENSG00000222755 uc022bbl.1 NG_043591 +HGNC:45931 RN7SKP207 RNA, 7SK small nuclear pseudogene 207 pseudogene pseudogene Approved 5p13.3 05p13.3 2013-03-19 2013-03-19 106480897 ENSG00000223136 uc063cqs.1 NG_042912 +HGNC:45932 RN7SKP208 RNA, 7SK small nuclear pseudogene 208 pseudogene pseudogene Approved 2p16.1 02p16.1 2013-03-19 2013-03-19 106481817 ENSG00000202344 uc021vhv.1 NG_044120 +HGNC:45933 RN7SKP209 RNA, 7SK small nuclear pseudogene 209 pseudogene pseudogene Approved 6q14.3 06q14.3 2013-03-19 2013-03-19 106479188 ENSG00000252697 uc063pyh.1 NG_043599 +HGNC:45934 RN7SKP210 RNA, 7SK small nuclear pseudogene 210 pseudogene pseudogene Approved 22q13.1 22q13.1 2013-03-19 2013-03-19 106480898 ENSG00000238875 uc062emd.1 NG_045246 +HGNC:45935 RN7SKP211 RNA, 7SK small nuclear pseudogene 211 pseudogene pseudogene Approved 6q21 06q21 2013-03-19 2013-03-19 106479189 ENSG00000200198 uc063qil.1 NG_043605 +HGNC:45936 RN7SKP212 RNA, 7SK small nuclear pseudogene 212 pseudogene pseudogene Approved 3q22.1 03q22.1 2013-03-19 2013-03-19 106481750 ENSG00000222783 uc062nuj.1 NG_043618 +HGNC:45937 RN7SKP213 RNA, 7SK small nuclear pseudogene 213 pseudogene pseudogene Approved 2q35 02q35 2013-03-19 2013-03-19 106480899 ENSG00000222678 uc061szk.1 NG_042926 +HGNC:45938 RN7SKP214 RNA, 7SK small nuclear pseudogene 214 pseudogene pseudogene Approved 22q12.3 22q12.3 2013-03-19 2013-03-19 106480473 ENSG00000201078 uc062dwa.1 NG_043638 +HGNC:45939 RN7SKP215 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45940 RN7SKP216 RNA, 7SK small nuclear pseudogene 216 pseudogene pseudogene Approved 12q24.21 12q24.21 2013-03-19 2013-03-19 106479190 ENSG00000222982 uc021ree.1 NG_043612 +HGNC:45941 RN7SKP217 RNA, 7SK small nuclear pseudogene 217 pseudogene pseudogene Approved 15q24.3 15q24.3 2013-03-19 2013-03-19 106479191 ENSG00000201510 uc059lxh.1 NG_043620 +HGNC:45942 RN7SKP218 RNA, 7SK small nuclear pseudogene 218 pseudogene pseudogene Approved 7p12.1 07p12.1 2013-03-19 2013-03-19 106480900 ENSG00000222154 uc064drr.1 NG_042934 +HGNC:45943 RN7SKP219 RNA, 7SK small nuclear pseudogene 219 pseudogene pseudogene Approved 10p12.31 10p12.31 2013-03-19 2013-03-19 106479192 ENSG00000252634 uc057seg.1 NG_043626 +HGNC:45944 RN7SKP220 RNA, 7SK small nuclear pseudogene 220 pseudogene pseudogene Approved 10p12.1 10p12.1 2013-03-19 2013-03-19 106480901 ENSG00000222543 uc057sib.1 NG_042942 +HGNC:45945 RN7SKP221 RNA, 7SK small nuclear pseudogene 221 pseudogene pseudogene Approved 22q11.21 22q11.21 2013-03-19 2013-03-19 106480474 ENSG00000222352 uc021wmi.1 NG_045524 +HGNC:45946 RN7SKP222 RNA, 7SK small nuclear pseudogene 222 pseudogene pseudogene Approved 3q28 03q28 2013-03-19 2013-03-19 106479193 ENSG00000222583 uc062rle.1 NG_043633 +HGNC:45947 RN7SKP223 RNA, 7SK small nuclear pseudogene 223 pseudogene pseudogene Approved 7q33 07q33 2013-03-19 2013-03-19 106479194 ENSG00000222514 uc064ijw.1 NG_045522 +HGNC:45948 RN7SKP224 RNA, 7SK small nuclear pseudogene 224 pseudogene pseudogene Approved 2p16.3 02p16.3 2013-03-19 2013-03-19 106480902 ENSG00000201010 uc061izt.1 NG_042950 +HGNC:45949 RN7SKP225 RNA, 7SK small nuclear pseudogene 225 pseudogene pseudogene Approved 9q22.33 09q22.33 2013-03-19 2013-03-19 106479195 ENSG00000222337 uc064utx.1 NG_043648 +HGNC:45950 RN7SKP226 RNA, 7SK small nuclear pseudogene 226 pseudogene pseudogene Approved 8q24.21 08q24.21 2013-03-19 2013-03-19 106480903 ENSG00000201782 uc064qep.1 NG_042958 +HGNC:45951 RN7SKP227 RNA, 7SK small nuclear pseudogene 227 pseudogene pseudogene Approved 3p22.2 03p22.2 2013-03-19 2013-03-19 106481818 ENSG00000201315 uc062iau.1 NG_044126 +HGNC:45952 RN7SKP228 RNA, 7SK small nuclear pseudogene 228 pseudogene pseudogene Approved 7p21.3 07p21.3 2013-03-19 2013-03-19 106479196 ENSG00000222974 uc064bpt.1 NG_043656 +HGNC:45953 RN7SKP229 RNA, 7SK small nuclear pseudogene 229 pseudogene pseudogene Approved 1q25.3 01q25.3 2013-03-19 2013-03-19 106480904 ENSG00000222397 uc057nsy.1 NG_042967 +HGNC:45954 RN7SKP230 RNA, 7SK small nuclear pseudogene 230 pseudogene pseudogene Approved 5q21.3 05q21.3 2013-03-19 2013-03-19 106479197 ENSG00000202512 uc021yce.1 NG_043663 +HGNC:45955 RN7SKP231 RNA, 7SK small nuclear pseudogene 231 pseudogene pseudogene Approved 8q21.3 08q21.3 2013-03-19 2013-03-19 106479198 ENSG00000200151 uc064okr.1 NG_043670 +HGNC:45956 RN7SKP232 RNA, 7SK small nuclear pseudogene 232 pseudogene pseudogene Approved 5q33.1 05q33.1 2013-03-19 2013-03-19 106480905 ENSG00000222102 uc063ivz.1 NG_042977 +HGNC:45957 RN7SKP233 RNA, 7SK small nuclear pseudogene 233 pseudogene pseudogene Approved 16q23.1 16q23.1 2013-03-19 2013-03-19 106480475 ENSG00000252814 uc021tlm.1 NG_043652 +HGNC:45958 RN7SKP234 RNA, 7SK small nuclear pseudogene 234 pseudogene pseudogene Approved 3q26.31 03q26.31 2013-03-19 2013-03-19 106480368 ENSG00000252982 uc021xhn.1 NG_045991 +HGNC:45959 RN7SKP235 RNA, 7SK small nuclear pseudogene 235 pseudogene pseudogene Approved 4q31.21 04q31.21 2013-03-19 2013-03-19 106479199 ENSG00000222594 uc062zyk.1 NG_043676 +HGNC:45960 RN7SKP236 RNA, 7SK small nuclear pseudogene 236 pseudogene pseudogene Approved 21q21.2 21q21.2 2013-03-19 2015-01-29 106480906 ENSG00000274662 uc061zgr.1 NG_042983 +HGNC:45961 RN7SKP237 RNA, 7SK small nuclear pseudogene 237 pseudogene pseudogene Approved 4q31.1 04q31.1 2013-03-19 2013-03-19 106479200 ENSG00000201533 uc062ztd.1 NG_043684 +HGNC:45962 RN7SKP238 RNA, 7SK small nuclear pseudogene 238 pseudogene pseudogene Approved 10q23.1 10q23.1 2013-03-19 2013-03-19 106479201 ENSG00000252292 uc021pvp.1 NG_045543 +HGNC:45963 RN7SKP239 RNA, 7SK small nuclear pseudogene 239 pseudogene pseudogene Approved 11q13.2 11q13.2 2013-03-19 2013-03-19 106480907 ENSG00000201684 uc021qmf.1 NG_045275 +HGNC:45964 RN7SKP240 RNA, 7SK small nuclear pseudogene 240 pseudogene pseudogene Approved 6p22.3 06p22.3 2013-03-19 2013-03-19 106479202 ENSG00000222515 uc063mcx.1 NG_045546 +HGNC:45965 RN7SKP241 RNA, 7SK small nuclear pseudogene 241 pseudogene pseudogene Approved 10p12.1 10p12.1 2013-03-19 2013-03-19 107063536 ENSG00000240294 uc021pok.1 NG_046354 +HGNC:45966 RN7SKP242 RNA, 7SK small nuclear pseudogene 242 pseudogene pseudogene Approved 9q21.32 09q21.32 2013-03-19 2013-03-19 106480908 ENSG00000251776 uc064tyr.1 NG_043001 +HGNC:45967 RN7SKP243 RNA, 7SK small nuclear pseudogene 243 pseudogene pseudogene Approved 11q13.4 11q13.4 2013-03-19 2013-03-19 106481819 ENSG00000199975 uc058fgy.1 NG_044135 +HGNC:45968 RN7SKP244 RNA, 7SK small nuclear pseudogene 244 pseudogene pseudogene Approved 4q22.1 04q22.1 2013-03-19 2013-03-19 106479203 ENSG00000252322 uc062ydk.1 NG_045088 +HGNC:45969 RN7SKP245 RNA, 7SK small nuclear pseudogene 245 pseudogene pseudogene Approved 6q23.2 06q23.2 2013-03-19 2013-03-19 106480909 ENSG00000200895 uc021zfi.1 NG_045282 +HGNC:45970 RN7SKP246 RNA, 7SK small nuclear pseudogene 246 pseudogene pseudogene Approved 5q31.3 05q31.3 2013-03-19 2013-03-19 106479204 ENSG00000201423 uc063igs.1 NG_043713 +HGNC:45971 RN7SKP247 RNA, 7SK small nuclear pseudogene 247 pseudogene pseudogene Approved 1p31.1 01p31.1 2013-03-19 2013-03-19 106479205 ENSG00000223026 uc057hwv.1 NG_043721 +HGNC:45972 RN7SKP248 RNA, 7SK small nuclear pseudogene 248 pseudogene pseudogene Approved 4q22.1 04q22.1 2013-03-19 2013-03-19 106480476 ENSG00000252087 uc021xqe.1 NG_045528 +HGNC:45973 RN7SKP249 RNA, 7SK small nuclear pseudogene 249 pseudogene pseudogene Approved 8q22.3 08q22.3 2013-03-19 2013-03-19 106480910 ENSG00000202360 uc022azk.1 NG_043018 +HGNC:45974 RN7SKP250 RNA, 7SK small nuclear pseudogene 250 pseudogene pseudogene Approved 12q24.11 12q24.11 2013-03-19 2013-03-19 106479206 ENSG00000200794 uc058tad.1 NG_043730 +HGNC:45975 RN7SKP251 RNA, 7SK small nuclear pseudogene 251 pseudogene pseudogene Approved 5q13.1 05q13.1 2013-03-19 2015-01-29 106633807 ENSG00000276309 uc063eej.1 NG_042879 +HGNC:45976 RN7SKP252 RNA, 7SK small nuclear pseudogene 252 pseudogene pseudogene Approved 22q13.33 22q13.33 2013-03-19 2013-03-19 106479207 ENSG00000223142 uc062fhx.1 NG_043738 +HGNC:45977 RN7SKP253 RNA, 7SK small nuclear pseudogene 253 pseudogene pseudogene Approved 4q31.1 04q31.1 2013-03-19 2013-03-19 106479208 ENSG00000252233 uc021xsh.1 NG_045560 +HGNC:45978 RN7SKP254 RNA, 7SK small nuclear pseudogene 254 pseudogene pseudogene Approved 15q26.2 15q26.2 2013-03-19 2013-03-19 106481820 ENSG00000222617 uc059nqq.1 NG_044141 +HGNC:45979 RN7SKP255 RNA, 7SK small nuclear pseudogene 255 pseudogene pseudogene Approved 14q32.11 14q32.11 2013-03-19 2013-03-19 106479209 ENSG00000200312 uc059eez.1 NG_043752 +HGNC:45980 RN7SKP256 RNA, 7SK small nuclear pseudogene 256 pseudogene pseudogene Approved 6p12.1 06p12.1 2013-03-19 2013-03-19 106480911 ENSG00000253010 uc063pbv.1 NG_043027 +HGNC:45981 RN7SKP257 RNA, 7SK small nuclear pseudogene 257 pseudogene pseudogene Approved 14q13.3 14q13.3 2013-03-19 2013-03-19 106479210 ENSG00000201395 uc059axi.1 NG_045567 +HGNC:45982 RN7SKP258 RNA, 7SK small nuclear pseudogene 258 pseudogene pseudogene Approved 9p22.1 09p22.1 2013-03-19 2013-03-19 106480912 ENSG00000252960 uc022bdt.1 NG_045290 +HGNC:45983 RN7SKP259 RNA, 7SK small nuclear pseudogene 259 pseudogene pseudogene Approved 11q12.1 11q12.1 2013-03-19 2013-03-19 106481751 ENSG00000222998 uc058bma.1 NG_043624 +HGNC:45984 RN7SKP260 RNA, 7SK small nuclear pseudogene 260 pseudogene pseudogene Approved 2q33.3 02q33.3 2013-03-19 2013-03-19 106479211 ENSG00000252716 uc061rts.1 NG_045094 +HGNC:45985 RN7SKP261 RNA, 7SK small nuclear pseudogene 261 pseudogene pseudogene Approved 12q21.31 12q21.31 2013-03-19 2013-03-19 106480477 ENSG00000222880 uc058rij.1 NG_043666 +HGNC:45986 RN7SKP262 RNA, 7SK small nuclear pseudogene 262 pseudogene pseudogene Approved 12p12.1 12p12.1 2013-03-19 2013-03-19 106479212 ENSG00000222950 uc058mbk.1 NG_043774 +HGNC:45987 RN7SKP263 RNA, 7SK small nuclear pseudogene 263 pseudogene pseudogene Approved 12q22 12q22 2013-03-19 2013-03-19 106480913 ENSG00000223126 uc021rby.1 NG_043047 +HGNC:45988 RN7SKP264 RNA, 7SK small nuclear pseudogene 264 pseudogene pseudogene Approved 9q21.33 09q21.33 2013-03-19 2013-03-19 106479213 ENSG00000223012 uc064ubt.1 NG_045575 +HGNC:45989 RN7SKP265 RNA, 7SK small nuclear pseudogene 265 pseudogene pseudogene Approved 3q26.33 03q26.33 2013-03-19 2013-03-19 106480914 ENSG00000252257 uc021xia.1 NG_045294 +HGNC:45990 RN7SKP266 RNA, 7SK small nuclear pseudogene 266 pseudogene pseudogene Approved 7p21.1 07p21.1 2013-03-19 2013-03-19 106479214 ENSG00000222164 uc064buq.1 NG_045096 +HGNC:45991 RN7SKP267 RNA, 7SK small nuclear pseudogene 267 pseudogene pseudogene Approved Xq28 Xq28 2013-03-19 2013-03-19 106480478 ENSG00000222313 uc065bme.1 NG_043672 +HGNC:45992 RN7SKP268 RNA, 7SK small nuclear pseudogene 268 pseudogene pseudogene Approved 6q25.1 06q25.1 2013-03-19 2013-03-19 106479215 ENSG00000223039 uc063sgz.1 NG_045581 +HGNC:45993 RN7SKP269 RNA, 7SK small nuclear pseudogene 269 pseudogene pseudogene Approved 1p36.22 01p36.22 2013-03-19 2013-03-19 106480915 ENSG00000202415 uc057cbr.1 NG_045300 +HGNC:45994 RN7SKP270 RNA, 7SK small nuclear pseudogene 270 pseudogene pseudogene Approved 1p21.3 01p21.3 2013-03-19 2013-03-19 106479216 ENSG00000223229 uc021oqh.1 NG_043806 +HGNC:45995 RN7SKP271 RNA, 7SK small nuclear pseudogene 271 pseudogene pseudogene Approved 20q11.22 20q11.22 2013-03-19 2013-03-19 106480916 ENSG00000222460 uc021wcp.1 NG_045016 +HGNC:45996 RN7SKP272 RNA, 7SK small nuclear pseudogene 272 pseudogene pseudogene Approved 1p22.2 01p22.2 2013-03-19 2013-03-19 106479217 ENSG00000252797 uc021opr.1 NG_043816 +HGNC:45997 RN7SKP273 RNA, 7SK small nuclear pseudogene 273 pseudogene pseudogene Approved 11q23.1 11q23.1 2013-03-19 2013-03-19 106481821 ENSG00000223324 uc058heu.1 NG_045730 +HGNC:45998 RN7SKP274 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45999 RN7SKP275 RNA, 7SK small nuclear pseudogene 275 pseudogene pseudogene Approved 4p16.2 04p16.2 2013-03-19 2013-03-19 106480917 ENSG00000201496 uc062uxi.1 NG_043078 +HGNC:46000 RN7SKP276 RNA, 7SK small nuclear pseudogene 276 pseudogene pseudogene Approved 1q42.13 01q42.13 2013-03-19 2013-03-19 106479218 ENSG00000252051 uc057qfy.1 NG_043823 +HGNC:46001 RN7SKP277 RNA, 7SK small nuclear pseudogene 277 pseudogene pseudogene Approved 7q31.32 07q31.32 2013-03-19 2013-03-19 106479219 ENSG00000252704 uc022akn.1 NG_043832 +HGNC:46002 RN7SKP278 RNA, 7SK small nuclear pseudogene 278 pseudogene pseudogene Approved 10q25.1 10q25.1 2013-03-19 2013-03-19 106480918 ENSG00000222436 uc021pxy.1 NG_043088 +HGNC:46003 RN7SKP279 RNA, 7SK small nuclear pseudogene 279 pseudogene pseudogene Approved 11q24.2 11q24.2 2013-03-19 2013-03-19 106480479 ENSG00000223315 uc058jai.1 NG_043679 +HGNC:46004 RN7SKP280 RNA, 7SK small nuclear pseudogene 280 pseudogene pseudogene Approved 7q36.2 07q36.2 2013-03-19 2013-03-19 106479220 ENSG00000201066 uc064joi.1 NG_043839 +HGNC:46005 RN7SKP281 RNA, 7SK small nuclear pseudogene 281 pseudogene pseudogene Approved 2q24.1 02q24.1 2013-03-19 2013-03-19 106480369 ENSG00000222404 uc061otb.1 NG_045200 +HGNC:46006 RN7SKP282 RNA, 7SK small nuclear pseudogene 282 pseudogene pseudogene Approved Yp11.2 Yp11.2 2013-03-19 2013-03-19 106480919 ENSG00000252633 uc065cqe.1 NG_043096 +HGNC:46007 RN7SKP283 RNA, 7SK small nuclear pseudogene 283 pseudogene pseudogene Approved 2q36.3 02q36.3 2013-03-19 2013-03-19 106479221 ENSG00000253006 uc061tgy.1 NG_045098 +HGNC:46008 RN7SKP284 RNA, 7SK small nuclear pseudogene 284 pseudogene pseudogene Approved 3p12.1 03p12.1 2013-03-19 2013-03-19 106479222 ENSG00000222934 uc062lru.1 NG_043852 +HGNC:46009 RN7SKP285 RNA, 7SK small nuclear pseudogene 285 pseudogene pseudogene Approved 1p21.1 01p21.1 2013-03-19 2013-03-19 106480920 ENSG00000222069 uc057iss.1 NG_043105 +HGNC:46010 RN7SKP286 RNA, 7SK small nuclear pseudogene 286 pseudogene pseudogene Approved 2q22.1 02q22.1 2013-03-19 2013-03-19 106481822 ENSG00000222826 uc061odg.1 NG_044153 +HGNC:46011 RN7SKP287 RNA, 7SK small nuclear pseudogene 287 pseudogene pseudogene Approved 11p12 11p12 2013-03-19 2013-03-19 106480921 ENSG00000252355 uc021qgj.1 NG_043116 +HGNC:46012 RN7SKP288 RNA, 7SK small nuclear pseudogene 288 pseudogene pseudogene Approved 10q25.2 10q25.2 2013-03-19 2013-03-19 106479223 ENSG00000252036 uc021pyd.1 NG_045608 +HGNC:46013 RN7SKP289 RNA, 7SK small nuclear pseudogene 289 pseudogene pseudogene Approved 12q13.13 12q13.13 2013-03-19 2013-03-19 106479224 ENSG00000253053 uc058otj.1 NG_043862 +HGNC:46014 RN7SKP290 RNA, 7SK small nuclear pseudogene 290 pseudogene pseudogene Approved Xp22.2 Xp22.2 2013-03-19 2015-01-29 106480480 ENSG00000271814 uc064xzs.1 NG_043689 +HGNC:46015 RN7SKP291 RNA, 7SK small nuclear pseudogene 291 pseudogene pseudogene Approved 1p32.3 01p32.3 2013-03-19 2013-03-19 106480922 ENSG00000199831 uc021onz.1 NG_043123 +HGNC:46016 RN7SKP292 RNA, 7SK small nuclear pseudogene 292 pseudogene pseudogene Approved 4p16.1 04p16.1 2013-03-19 2013-03-19 106479225 ENSG00000202392 uc062uzb.1 NG_045614 +HGNC:46017 RN7SKP293 RNA, 7SK small nuclear pseudogene 293 pseudogene pseudogene Approved 6p24.1 06p24.1 2013-03-19 2013-03-19 106480923 ENSG00000223321 uc063lxg.1 NG_043131 +HGNC:46018 RN7SKP294 RNA, 7SK small nuclear pseudogene 294 pseudogene pseudogene Approved 8q11.21 08q11.21 2013-03-19 2013-03-19 106479226 ENSG00000199640 uc064msa.1 NG_043877 +HGNC:46019 RN7SKP295 RNA, 7SK small nuclear pseudogene 295 pseudogene pseudogene Approved 5q14.3 05q14.3 2013-03-19 2013-03-19 106480924 ENSG00000253073 uc063fch.1 NG_043139 +HGNC:46020 RN7SKP296 RNA, 7SK small nuclear pseudogene 296 pseudogene pseudogene Approved 3q28 03q28 2013-03-19 2013-03-19 106481823 ENSG00000223117 uc021xit.1 NG_045739 +HGNC:46021 RN7SKP297 RNA, 7SK small nuclear pseudogene 297 pseudogene pseudogene Approved 11q13.4 11q13.4 2013-03-19 2013-03-19 106479227 ENSG00000223202 uc058fkh.1 NG_043884 +HGNC:46022 RN7SKP298 RNA, 7SK small nuclear pseudogene 298 pseudogene pseudogene Approved 3q26.1 03q26.1 2013-03-19 2013-03-19 106479228 ENSG00000251759 uc021xgz.1 NG_043894 +HGNC:46023 RN7SKP299 RNA, 7SK small nuclear pseudogene 299 pseudogene pseudogene Approved 6q23.3 06q23.3 2013-03-19 2015-01-29 106480925 ENSG00000271765 uc021zfs.1 NG_043147 +HGNC:10038 RN7SL1 RNA, 7SL, cytoplasmic 1 non-coding RNA RNA, small cytoplasmic Approved 14q21.3 14q21.3 "7SL|7L1a|RNSRP1" RN7SL RNA, 7SL, cytoplasmic RNAs, 7SL, cytoplasmic 850 1994-07-11 2003-09-26 2003-09-24 2016-07-20 6029 ENSG00000276168 OTTHUMG00000171559 uc021rsp.2 X04248 NR_002715 "6084597|15667936" RGD:8157638 612177 7SL +HGNC:23134 RN7SL2 RNA, 7SL, cytoplasmic 2 non-coding RNA RNA, small cytoplasmic Approved 14q21.3 14q21.3 "7SL1c|7L30.1|RNSRP2" RNAs, 7SL, cytoplasmic 850 2003-09-24 2016-10-10 378706 ENSG00000274012 OTTHUMG00000189346 uc021rst.3 X04249 NR_027260 612179 +HGNC:23135 RN7SL3 RNA, 7SL, cytoplasmic 3 non-coding RNA RNA, small cytoplasmic Approved 14q21.3 14q21.3 "7L30.2|RNSRP3" RN7SL631P RNA, 7SL, cytoplasmic 631, pseudogene RNAs, 7SL, cytoplasmic 850 2003-09-24 2015-02-11 378707 ENSG00000279868 OTTHUMG00000189345 uc059bhk.1 X04251 NG_011406 15667936 612180 +HGNC:10039 RN7SL4P RNA, 7SL, cytoplasmic 4, pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 7L28 "RN7SLP1|RN7SL427P" "RNA, 7SL, cytoplasmic, pseudogene 1|RNA, 7SL, cytoplasmic 427, pseudogene" RNAs, 7SL, cytoplasmic 850 1994-07-14 2010-02-04 2010-02-04 2014-11-18 6030 ENSG00000263740 uc062hei.1 X04250 NG_002425 6084597 +HGNC:10040 RN7SL5P RNA, 7SL, cytoplasmic 5, pseudogene pseudogene pseudogene Approved 9p23 09p23 7LEM1 "RN7SLP2|RN7SL249P" "RNA, 7SL, cytoplasmic, pseudogene 2|RNA, 7SL, cytoplasmic 249, pseudogene" RNAs, 7SL, cytoplasmic 850 1994-07-14 2010-02-04 2010-02-04 2014-11-19 6031 ENSG00000265735 uc022bdl.2 X04252 NG_002426 6084597 +HGNC:10041 RN7SL6P RNA, 7SL, cytoplasmic 6, pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 7L7 "RN7SLP3|RN7SL848P" "RNA, 7SL, cytoplasmic, pseudogene 3|RNA, 7SL, cytoplasmic 848, pseudogene" RNAs, 7SL, cytoplasmic 850 1994-07-14 2010-02-04 2010-02-04 2015-02-12 6032 ENSG00000272019 X04253 NG_002427 6084597 +HGNC:10042 RN7SL7P RNA, 7SL, cytoplasmic 7, pseudogene pseudogene pseudogene Approved 7q21.2 07q21.2 7L23 "RN7SLP4|RN7SL27P" "RNA, 7SL, cytoplasmic, pseudogene 4|RNA, 7SL, cytoplasmic 27, pseudogene" RNAs, 7SL, cytoplasmic 850 1994-07-14 2010-02-04 2010-02-04 2014-11-19 6033 ENSG00000266794 uc064fiz.1 X04254 NG_002428 6084597 +HGNC:10043 RN7SL8P RNA, 7SL, cytoplasmic 8, pseudogene pseudogene pseudogene Approved 7q22.3 07q22.3 7L63 "RN7SLP5|RN7SL433P" "RNA, 7SL, cytoplasmic, pseudogene 5|RNA, 7SL, cytoplasmic 433, pseudogene" RNAs, 7SL, cytoplasmic 850 1994-07-14 2010-02-04 2010-02-04 2014-11-19 6034 ENSG00000243352 uc064gss.1 X04255 NG_002429 6084597 +HGNC:46025 RN7SL9P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46026 RN7SL10P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46027 RN7SL11P RNA, 7SL, cytoplasmic 11, pseudogene pseudogene pseudogene Approved 6q15 06q15 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479229 ENSG00000239316 uc063qbe.1 NG_045621 +HGNC:46028 RN7SL12P RNA, 7SL, cytoplasmic 12, pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480926 ENSG00000239553 uc058eat.1 NG_045340 +HGNC:46029 RN7SL13P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46030 RN7SL14P RNA, 7SL, cytoplasmic 14, pseudogene pseudogene pseudogene Approved 20p11.23 20p11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480481 ENSG00000266720 uc061vpn.1 NG_043696 +HGNC:46031 RN7SL15P RNA, 7SL, cytoplasmic 15, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479230 ENSG00000264573 uc064yql.1 NG_043908 +HGNC:46032 RN7SL16P RNA, 7SL, cytoplasmic 16, pseudogene pseudogene pseudogene Approved 4p15.2 04p15.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479231 ENSG00000243005 uc062vqf.1 NG_045629 +HGNC:46033 RN7SL17P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46034 RN7SL18P RNA, 7SL, cytoplasmic 18, pseudogene pseudogene pseudogene Approved 2p15 02p15 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480927 ENSG00000241625 uc061jps.1 NG_045024 +HGNC:46035 RN7SL19P RNA, 7SL, cytoplasmic 19, pseudogene pseudogene pseudogene Approved 8q13.3 08q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480370 ENSG00000243532 uc064npi.1 NG_045999 +HGNC:46036 RN7SL20P RNA, 7SL, cytoplasmic 20, pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479232 ENSG00000242251 uc062dlm.1 NG_045634 +HGNC:46037 RN7SL21P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46038 RN7SL22P RNA, 7SL, cytoplasmic 22, pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480928 ENSG00000243136 uc064sxy.1 NG_045348 +HGNC:46039 RN7SL23P RNA, 7SL, cytoplasmic 23, pseudogene pseudogene pseudogene Approved 11q12.2 11q12.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480482 ENSG00000240823 uc058cdd.1 NG_045547 +HGNC:46040 RN7SL24P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46041 RN7SL25P RNA, 7SL, cytoplasmic 25, pseudogene pseudogene pseudogene Approved 9p24.1 09p24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479233 ENSG00000264530 uc064sbe.1 NG_043925 +HGNC:46042 RN7SL26P RNA, 7SL, cytoplasmic 26, pseudogene pseudogene pseudogene Approved 6p21.31 06p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479234 ENSG00000242014 uc063nyc.1 NG_043931 +HGNC:46044 RN7SL28P RNA, 7SL, cytoplasmic 28, pseudogene pseudogene pseudogene Approved 4q35.1 04q35.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480929 ENSG00000244512 uc063bhj.1 NG_045026 +HGNC:46045 RN7SL29P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46046 RN7SL30P RNA, 7SL, cytoplasmic 30, pseudogene pseudogene pseudogene Approved 9q33.3 09q33.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479235 ENSG00000243845 uc064vsd.1 NG_045645 +HGNC:46047 RN7SL31P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46048 RN7SL32P RNA, 7SL, cytoplasmic 32, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480930 ENSG00000263941 uc061ttf.1 NG_045355 +HGNC:46049 RN7SL33P RNA, 7SL, cytoplasmic 33, pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479236 ENSG00000243049 uc059znq.1 NG_043947 +HGNC:46050 RN7SL34P RNA, 7SL, cytoplasmic 34, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481824 ENSG00000239868 uc060yzs.1 NG_044170 +HGNC:46051 RN7SL35P RNA, 7SL, cytoplasmic 35, pseudogene pseudogene pseudogene Approved 7q21.11 07q21.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480931 ENSG00000240347 uc064euj.1 NG_043197 +HGNC:46052 RN7SL36P RNA, 7SL, cytoplasmic 36, pseudogene pseudogene pseudogene Approved 3q29 03q29 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479237 ENSG00000244314 uc062rqk.1 NG_045651 +HGNC:46053 RN7SL37P RNA, 7SL, cytoplasmic 37, pseudogene pseudogene pseudogene Approved 5p13.2 05p13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479238 ENSG00000242493 uc032ura.2 NG_045656 +HGNC:46054 RN7SL38P RNA, 7SL, cytoplasmic 38, pseudogene pseudogene pseudogene Approved 12p12.1 12p12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480932 ENSG00000240481 uc058lzb.1 NG_043204 +HGNC:46055 RN7SL39P RNA, 7SL, cytoplasmic 39, pseudogene pseudogene pseudogene Approved 18p11.31 18p11.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479239 ENSG00000241223 uc060myp.1 NG_045660 +HGNC:46056 RN7SL40P RNA, 7SL, cytoplasmic 40, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480483 ENSG00000242696 uc061rni.1 NG_045089 +HGNC:46057 RN7SL41P RNA, 7SL, cytoplasmic 41, pseudogene pseudogene pseudogene Approved 8q21.13 08q21.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480933 ENSG00000241550 uc064nyc.1 NG_043212 +HGNC:46058 RN7SL42P RNA, 7SL, cytoplasmic 42, pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479240 ENSG00000263999 uc058bri.1 NG_045664 +HGNC:46059 RN7SL43P RNA, 7SL, cytoplasmic 43, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479241 ENSG00000275878 uc064ebb.1 NG_043983 +HGNC:46060 RN7SL44P RNA, 7SL, cytoplasmic 44, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480934 ENSG00000263841 uc057lbe.1 NG_043221 +HGNC:46061 RN7SL45P RNA, 7SL, cytoplasmic 45, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481975 ENSG00000264862 uc060drl.1 NG_045424 +HGNC:46062 RN7SL46P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46063 RN7SL47P RNA, 7SL, cytoplasmic 47, pseudogene pseudogene pseudogene Approved 6q21 06q21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479242 ENSG00000244710 uc063qix.1 NG_045672 +HGNC:46064 RN7SL48P RNA, 7SL, cytoplasmic 48, pseudogene pseudogene pseudogene Approved Xp22.13 Xp22.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481825 ENSG00000266710 uc064ygb.1 NG_045746 +HGNC:46065 RN7SL49P RNA, 7SL, cytoplasmic 49, pseudogene pseudogene pseudogene Approved 13q14.12 13q14.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480935 ENSG00000265802 uc058wtp.1 NG_045369 +HGNC:46066 RN7SL50P RNA, 7SL, cytoplasmic 50, pseudogene pseudogene pseudogene Approved 18p11.23 18p11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479243 ENSG00000242985 uc021ugu.2 NG_043993 +HGNC:46067 RN7SL51P RNA, 7SL, cytoplasmic 51, pseudogene pseudogene pseudogene Approved 2p15 02p15 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480936 ENSG00000239958 uc021vij.1 NG_045032 +HGNC:46068 RN7SL52P RNA, 7SL, cytoplasmic 52, pseudogene pseudogene pseudogene Approved 21p11.2 21p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480937 ENSG00000264002 uc061zag.1 NG_043253 +HGNC:46069 RN7SL53P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46070 RN7SL54P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46071 RN7SL55P RNA, 7SL, cytoplasmic 55, pseudogene pseudogene pseudogene Approved 4q25 04q25 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479244 ENSG00000243227 uc062yyn.1 NG_044002 +HGNC:46072 RN7SL56P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46073 RN7SL57P RNA, 7SL, cytoplasmic 57, pseudogene pseudogene pseudogene Approved 9q32 09q32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480484 ENSG00000242256 uc064vcb.1 NG_045550 +HGNC:46074 RN7SL58P RNA, 7SL, cytoplasmic 58, pseudogene pseudogene pseudogene Approved 5p14.3 05p14.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479245 ENSG00000241552 uc063cnu.1 NG_044011 +HGNC:46075 RN7SL59P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46076 RN7SL60P RNA, 7SL, cytoplasmic 60, pseudogene pseudogene pseudogene Approved 13q32.3 13q32.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480938 ENSG00000243366 uc058xyf.1 NG_043262 +HGNC:46077 RN7SL61P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46078 RN7SL62P RNA, 7SL, cytoplasmic 62, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479246 ENSG00000239640 uc057gpd.1 NG_044018 +HGNC:46079 RN7SL63P RNA, 7SL, cytoplasmic 63, pseudogene pseudogene pseudogene Approved 10p11.23 10p11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480939 ENSG00000239744 uc057snq.1 NG_043272 +HGNC:46080 RN7SL64P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46081 RN7SL65P RNA, 7SL, cytoplasmic 65, pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479247 ENSG00000243770 uc061pue.1 NG_045686 +HGNC:46082 RN7SL66P RNA, 7SL, cytoplasmic 66, pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480485 ENSG00000264030 uc061gqh.1 NG_043726 +HGNC:46083 RN7SL67P RNA, 7SL, cytoplasmic 67, pseudogene pseudogene pseudogene Approved 12p12.3 12p12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479248 ENSG00000243854 uc058lsq.1 NG_045689 +HGNC:46084 RN7SL68P RNA, 7SL, cytoplasmic 68, pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 107080632 ENSG00000242020 uc063iau.1 NG_000012 +HGNC:46085 RN7SL69P RNA, 7SL, cytoplasmic 69, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480940 ENSG00000240533 uc021qtu.2 NG_045383 +HGNC:46086 RN7SL70P RNA, 7SL, cytoplasmic 70, pseudogene pseudogene pseudogene Approved 19p13.11 19p13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479249 ENSG00000241172 uc060vvt.1 NG_044043 +HGNC:46087 RN7SL71P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46088 RN7SL72P RNA, 7SL, cytoplasmic 72, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480941 ENSG00000243374 uc064iza.1 NG_045034 +HGNC:46089 RN7SL73P RNA, 7SL, cytoplasmic 73, pseudogene pseudogene pseudogene Approved 21q22.12 21q22.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479250 ENSG00000265882 uc062rrp.1 NG_044054 +HGNC:46090 RN7SL74P RNA, 7SL, cytoplasmic 74, pseudogene pseudogene pseudogene Approved Xq21.33 Xq21.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480942 ENSG00000265260 uc065aff.1 NG_045388 +HGNC:46091 RN7SL75P RNA, 7SL, cytoplasmic 75, pseudogene pseudogene pseudogene Approved 9q31.1 09q31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 107063539 ENSG00000239908 uc064uuu.1 NG_046357 +HGNC:46092 RN7SL76P RNA, 7SL, cytoplasmic 76, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479251 ENSG00000241959 uc064jkq.1 NG_045126 +HGNC:46093 RN7SL77P RNA, 7SL, cytoplasmic 77, pseudogene pseudogene pseudogene Approved 14q24.2 14q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479252 ENSG00000240837 uc059cxg.1 NG_044071 +HGNC:46094 RN7SL78P RNA, 7SL, cytoplasmic 78, pseudogene pseudogene pseudogene Approved 10q23.31 10q23.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481752 ENSG00000243782 uc057usg.1 NG_043631 +HGNC:46095 RN7SL79P RNA, 7SL, cytoplasmic 79, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480943 ENSG00000239595 uc060drh.1 NG_045393 +HGNC:46096 RN7SL80P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46097 RN7SL81P RNA, 7SL, cytoplasmic 81, pseudogene pseudogene pseudogene Approved 7q32.1 07q32.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479253 ENSG00000244218 uc064hvh.1 NG_045701 +HGNC:46098 RN7SL82P RNA, 7SL, cytoplasmic 82, pseudogene pseudogene pseudogene Approved 15q13.2 15q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106480944 ENSG00000278696 uc059hby.1 NG_045396 +HGNC:46099 RN7SL83P RNA, 7SL, cytoplasmic 83, pseudogene pseudogene pseudogene Approved 7p14.1 07p14.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479254 ENSG00000241756 uc064cyl.1 NG_045704 +HGNC:46100 RN7SL84P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46101 RN7SL85P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46102 RN7SL86P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46103 RN7SL87P RNA, 7SL, cytoplasmic 87, pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479255 ENSG00000239390 uc021yfc.2 NG_044096 +HGNC:46104 RN7SL88P RNA, 7SL, cytoplasmic 88, pseudogene pseudogene pseudogene Approved 12q23.1 12q23.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106480945 ENSG00000277062 uc058sac.1 NG_043322 +HGNC:46105 RN7SL89P RNA, 7SL, cytoplasmic 89, pseudogene pseudogene pseudogene Approved 4q24 04q24 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479256 ENSG00000243383 uc062ysh.1 NG_044107 +HGNC:46106 RN7SL90P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46107 RN7SL91P RNA, 7SL, cytoplasmic 91, pseudogene pseudogene pseudogene Approved Xp21.3 Xp21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480946 ENSG00000240439 uc064yke.1 NG_043329 +HGNC:46108 RN7SL92P RNA, 7SL, cytoplasmic 92, pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479257 ENSG00000265592 uc062lpe.1 NG_045712 +HGNC:46109 RN7SL93P RNA, 7SL, cytoplasmic 93, pseudogene pseudogene pseudogene Approved Xq23 Xq23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480947 ENSG00000240327 uc065auc.1 NG_043339 +HGNC:46110 RN7SL94P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46111 RN7SL95P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46112 RN7SL96P RNA, 7SL, cytoplasmic 96, pseudogene pseudogene pseudogene Approved 2p22.1 02p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480486 ENSG00000265905 uc061ikf.1 NG_045092 +HGNC:46113 RN7SL97P RNA, 7SL, cytoplasmic 97, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479258 ENSG00000242216 uc021uii.2 NG_044121 +HGNC:46114 RN7SL98P RNA, 7SL, cytoplasmic 98, pseudogene pseudogene pseudogene Approved 9p22.3 09p22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479259 ENSG00000240613 uc064sfn.1 NG_045721 +HGNC:46115 RN7SL99P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46116 RN7SL100P RNA, 7SL, cytoplasmic 100, pseudogene pseudogene pseudogene Approved 9p21.2 09p21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480948 ENSG00000240306 uc064slr.1 NG_043346 +HGNC:46117 RN7SL101P RNA, 7SL, cytoplasmic 101, pseudogene pseudogene pseudogene Approved 4p15.1 04p15.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479260 ENSG00000243548 uc021xna.1 NG_044136 +HGNC:46118 RN7SL102P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46119 RN7SL103P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46120 RN7SL104P RNA, 7SL, cytoplasmic 104, pseudogene pseudogene pseudogene Approved 2p24.3 02p24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480949 ENSG00000243541 uc061gvo.1 NG_045042 +HGNC:46121 RN7SL105P RNA, 7SL, cytoplasmic 105, pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480487 ENSG00000243704 uc059zgx.1 NG_045557 +HGNC:46122 RN7SL106P RNA, 7SL, cytoplasmic 106, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-01-29 106479261 ENSG00000273981 uc059gsk.1 NG_045728 +HGNC:46123 RN7SL107P RNA, 7SL, cytoplasmic 107, pseudogene pseudogene pseudogene Approved 8q21.13 08q21.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479262 ENSG00000243424 uc064nyn.1 NG_044149 +HGNC:46124 RN7SL108P RNA, 7SL, cytoplasmic 108, pseudogene pseudogene pseudogene Approved 14q24.1 14q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480950 ENSG00000243546 uc021rvd.2 NG_043363 +HGNC:46125 RN7SL109P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46126 RN7SL110P RNA, 7SL, cytoplasmic 110, pseudogene pseudogene pseudogene Approved 3p25.1 03p25.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480371 ENSG00000241064 uc062hde.1 NG_046003 +HGNC:46127 RN7SL111P RNA, 7SL, cytoplasmic 111, pseudogene pseudogene pseudogene Approved 2q14.1 02q14.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479263 ENSG00000243510 uc061nhf.1 NG_045139 +HGNC:46128 RN7SL112P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46129 RN7SL113P RNA, 7SL, cytoplasmic 113, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-01-29 106480951 ENSG00000278590 uc061lgc.1 NG_045422 +HGNC:46130 RN7SL114P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46131 RN7SL115P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46132 RN7SL116P RNA, 7SL, cytoplasmic 116, pseudogene pseudogene pseudogene Approved 20q11.23 20q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480488 ENSG00000240474 uc021wdo.2 NG_045561 +HGNC:46133 RN7SL117P RNA, 7SL, cytoplasmic 117, pseudogene pseudogene pseudogene Approved 2p24.1 02p24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479264 ENSG00000264192 uc061hac.1 NG_044163 +HGNC:46134 RN7SL118P RNA, 7SL, cytoplasmic 118, pseudogene pseudogene pseudogene Approved Xq24 Xq24 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480952 ENSG00000266420 uc065awa.1 NG_045426 +HGNC:46135 RN7SL119P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46136 RN7SL120P RNA, 7SL, cytoplasmic 120, pseudogene pseudogene pseudogene Approved 3p26.3 03p26.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480953 ENSG00000244169 uc062gbe.1 NG_043384 +HGNC:46137 RN7SL121P RNA, 7SL, cytoplasmic 121, pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479265 ENSG00000263974 uc060rli.1 NG_045744 +HGNC:46138 RN7SL122P RNA, 7SL, cytoplasmic 122, pseudogene pseudogene pseudogene Approved 1p35.1 01p35.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480954 ENSG00000263529 uc057ekz.1 NG_045432 +HGNC:46139 RN7SL123P RNA, 7SL, cytoplasmic 123, pseudogene pseudogene pseudogene Approved 9p24.1 09p24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479266 ENSG00000266863 uc064sbj.1 NG_044180 +HGNC:46140 RN7SL124P RNA, 7SL, cytoplasmic 124, pseudogene pseudogene pseudogene Approved 2q23.3 02q23.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480955 ENSG00000242113 uc061opc.1 NG_045437 +HGNC:46141 RN7SL125P RNA, 7SL, cytoplasmic 125, pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479267 ENSG00000244514 uc060gxe.1 NG_045749 +HGNC:46142 RN7SL126P RNA, 7SL, cytoplasmic 126, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-01-29 106479268 ENSG00000276281 uc061lhp.1 NG_045143 +HGNC:46143 RN7SL127P RNA, 7SL, cytoplasmic 127, pseudogene pseudogene pseudogene Approved 4q21.21 04q21.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480956 ENSG00000242175 uc062xpo.1 NG_045047 +HGNC:46144 RN7SL128P RNA, 7SL, cytoplasmic 128, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481826 ENSG00000240869 uc063mcl.1 NG_044187 +HGNC:46145 RN7SL129P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46146 RN7SL130P RNA, 7SL, cytoplasmic 130, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479269 ENSG00000244256 uc057hfp.1 NG_045759 +HGNC:46147 RN7SL131P RNA, 7SL, cytoplasmic 131, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480957 ENSG00000264592 uc057euc.1 NG_043418 +HGNC:46148 RN7SL132P RNA, 7SL, cytoplasmic 132, pseudogene pseudogene pseudogene Approved 7p14.3 07p14.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479270 ENSG00000242653 uc064csz.1 NG_045763 +HGNC:46149 RN7SL133P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46150 RN7SL134P RNA, 7SL, cytoplasmic 134, pseudogene pseudogene pseudogene Approved 16q23.3 16q23.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479271 ENSG00000263360 uc059xrt.1 NG_045765 +HGNC:46151 RN7SL135P RNA, 7SL, cytoplasmic 135, pseudogene pseudogene pseudogene Approved 8q12.3 08q12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480958 ENSG00000241964 uc064ngq.1 NG_043427 +HGNC:46152 RN7SL136P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46153 RN7SL137P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46154 RN7SL138P RNA, 7SL, cytoplasmic 138, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480489 ENSG00000266274 uc060dpu.1 NG_043756 +HGNC:46155 RN7SL139P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46156 RN7SL140P RNA, 7SL, cytoplasmic 140, pseudogene pseudogene pseudogene Approved 2p24.1 02p24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479272 ENSG00000266059 uc061gyi.1 NG_044222 +HGNC:46157 RN7SL141P RNA, 7SL, cytoplasmic 141, pseudogene pseudogene pseudogene Approved 3q26.31 03q26.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480959 ENSG00000243398 uc062pzk.1 NG_045448 +HGNC:46158 RN7SL142P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46159 RN7SL143P RNA, 7SL, cytoplasmic 143, pseudogene pseudogene pseudogene Approved 16q21 16q21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479273 ENSG00000244003 uc059ver.1 NG_044229 +HGNC:46160 RN7SL144P RNA, 7SL, cytoplasmic 144, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480960 ENSG00000242559 uc064yqz.1 NG_045451 +HGNC:46161 RN7SL145P RNA, 7SL, cytoplasmic 145, pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481753 ENSG00000244357 uc062iyg.1 NG_045521 +HGNC:46162 RN7SL146P RNA, 7SL, cytoplasmic 146, pseudogene pseudogene pseudogene Approved 19p13.11 19p13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481827 ENSG00000240106 uc060uzo.1 NG_045754 +HGNC:46163 RN7SL147P RNA, 7SL, cytoplasmic 147, pseudogene pseudogene pseudogene Approved 3p25.2 03p25.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479274 ENSG00000263988 uc062gur.1 NG_044236 +HGNC:46164 RN7SL148P RNA, 7SL, cytoplasmic 148, pseudogene pseudogene pseudogene Approved 1q44 01q44 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479275 ENSG00000244066 uc057qwd.1 NG_044244 +HGNC:46165 RN7SL149P RNA, 7SL, cytoplasmic 149, pseudogene pseudogene pseudogene Approved 8p11.21 08p11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480961 ENSG00000241834 uc064mit.1 NG_043450 +HGNC:46166 RN7SL150P RNA, 7SL, cytoplasmic 150, pseudogene pseudogene pseudogene Approved 19q13.11 19q13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479276 ENSG00000240626 uc060wut.1 NG_044254 +HGNC:46167 RN7SL151P RNA, 7SL, cytoplasmic 151, pseudogene pseudogene pseudogene Approved 9p21.3 09p21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 107075319 ENSG00000244230 uc064sjn.1 +HGNC:46168 RN7SL152P RNA, 7SL, cytoplasmic 152, pseudogene pseudogene pseudogene Approved 4q31.1 04q31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480962 ENSG00000242102 uc062zuh.1 NG_045053 +HGNC:46169 RN7SL153P RNA, 7SL, cytoplasmic 153, pseudogene pseudogene pseudogene Approved 5q13.2 05q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480490 ENSG00000244748 uc063eks.1 NG_045569 +HGNC:46170 RN7SL154P RNA, 7SL, cytoplasmic 154, pseudogene pseudogene pseudogene Approved 19q13.11 19q13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479277 ENSG00000264317 uc060wwb.1 NG_044262 +HGNC:46171 RN7SL155P RNA, 7SL, cytoplasmic 155, pseudogene pseudogene pseudogene Approved 19p13.11 19p13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479278 ENSG00000263490 uc060vtq.1 NG_044271 +HGNC:46172 RN7SL156P RNA, 7SL, cytoplasmic 156, pseudogene pseudogene pseudogene Approved 20q11.23 20q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480963 ENSG00000242509 uc061wum.1 NG_045458 +HGNC:46173 RN7SL157P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46174 RN7SL158P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-06 +HGNC:46175 RN7SL159P RNA, 7SL, cytoplasmic 159, pseudogene pseudogene pseudogene Approved 9q34.11 09q34.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479279 ENSG00000242281 uc064wkt.1 NG_044280 +HGNC:46176 RN7SL160P RNA, 7SL, cytoplasmic 160, pseudogene pseudogene pseudogene Approved 2p13.3 02p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480964 ENSG00000241159 uc061kkk.1 NG_043472 +HGNC:46177 RN7SL161P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-06 +HGNC:46178 RN7SL162P RNA, 7SL, cytoplasmic 162, pseudogene pseudogene pseudogene Approved 22q12.1 22q12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481828 ENSG00000266503 uc062cuc.1 NG_045757 +HGNC:46179 RN7SL163P RNA, 7SL, cytoplasmic 163, pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479280 ENSG00000266195 uc061zdz.1 NG_044289 +HGNC:46180 RN7SL164P RNA, 7SL, cytoplasmic 164, pseudogene pseudogene pseudogene Approved 13q32.1 13q32.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480965 ENSG00000242614 uc021rlo.2 NG_045466 +HGNC:46181 RN7SL165P RNA, 7SL, cytoplasmic 165, pseudogene pseudogene pseudogene Approved 1p36.11 01p36.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479281 ENSG00000241188 uc057dtn.1 NG_044298 +HGNC:46182 RN7SL166P RNA, 7SL, cytoplasmic 166, pseudogene pseudogene pseudogene Approved 13q12.11 13q12.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-06 106479282 ENSG00000275014 uc058vtd.1 NG_045797 +HGNC:46183 RN7SL167P RNA, 7SL, cytoplasmic 167, pseudogene pseudogene pseudogene Approved 11q25 11q25 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480966 ENSG00000242673 uc058jej.1 NG_043485 +HGNC:46184 RN7SL168P RNA, 7SL, cytoplasmic 168, pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480491 ENSG00000244296 uc062blm.1 NG_043768 +HGNC:46185 RN7SL169P RNA, 7SL, cytoplasmic 169, pseudogene pseudogene pseudogene Approved 5q12.3 05q12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480372 ENSG00000242547 uc063dyl.1 NG_046006 +HGNC:46186 RN7SL170P RNA, 7SL, cytoplasmic 170, pseudogene pseudogene pseudogene Approved 20q13.31 20q13.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479283 ENSG00000241821 uc061xxg.1 NG_044314 +HGNC:46187 RN7SL171P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-06 +HGNC:46188 RN7SL172P RNA, 7SL, cytoplasmic 172, pseudogene pseudogene pseudogene Approved 3q13.33 03q13.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480967 ENSG00000243544 uc062myk.1 NG_045471 +HGNC:46189 RN7SL173P RNA, 7SL, cytoplasmic 173, pseudogene pseudogene pseudogene Approved 6q25.3 06q25.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479284 ENSG00000243373 uc063sns.1 NG_045802 +HGNC:46190 RN7SL174P RNA, 7SL, cytoplasmic 174, pseudogene pseudogene pseudogene Approved 5q23.1 05q23.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479285 ENSG00000243333 uc063ghd.1 NG_044332 +HGNC:46191 RN7SL175P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-06 +HGNC:46192 RN7SL176P RNA, 7SL, cytoplasmic 176, pseudogene pseudogene pseudogene Approved 12q23.1 12q23.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480968 ENSG00000266610 uc058seo.1 NG_045474 +HGNC:46193 RN7SL177P RNA, 7SL, cytoplasmic 177, pseudogene pseudogene pseudogene Approved 5q33.2 05q33.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480969 ENSG00000242976 uc063ixl.1 NG_045476 +HGNC:46194 RN7SL178P RNA, 7SL, cytoplasmic 178, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479286 ENSG00000263616 uc064kce.1 NG_044340 +HGNC:46195 RN7SL179P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-06 +HGNC:46196 RN7SL180P RNA, 7SL, cytoplasmic 180, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480970 ENSG00000242860 uc057hcu.1 NG_045479 +HGNC:46197 RN7SL181P RNA, 7SL, cytoplasmic 181, pseudogene pseudogene pseudogene Approved 9q33.2 09q33.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480492 ENSG00000243738 uc064vkt.1 NG_043777 +HGNC:46198 RN7SL182P RNA, 7SL, cytoplasmic 182, pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479287 ENSG00000241461 uc062jpy.1 NG_044350 +HGNC:46199 RN7SL183P RNA, 7SL, cytoplasmic 183, pseudogene pseudogene pseudogene Approved 6q15 06q15 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480971 ENSG00000240997 uc063pzz.1 NG_043525 +HGNC:46200 RN7SL184P RNA, 7SL, cytoplasmic 184, pseudogene pseudogene pseudogene Approved 4q26 04q26 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479288 ENSG00000239279 uc062zdw.1 NG_044360 +HGNC:46201 RN7SL185P RNA, 7SL, cytoplasmic 185, pseudogene pseudogene pseudogene Approved 15q13.3 15q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-06 106479289 ENSG00000275776 uc021sie.2 NG_045816 +HGNC:46202 RN7SL186P RNA, 7SL, cytoplasmic 186, pseudogene pseudogene pseudogene Approved 1p36.12 01p36.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-06 106480972 ENSG00000278124 uc057ddh.1 NG_045483 +HGNC:46203 RN7SL187P RNA, 7SL, cytoplasmic 187, pseudogene pseudogene pseudogene Approved 9q33.2 09q33.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481829 ENSG00000240299 uc022bmt.2 NG_044203 +HGNC:46204 RN7SL188P RNA, 7SL, cytoplasmic 188, pseudogene pseudogene pseudogene Approved 11p15.1 11p15.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479290 ENSG00000241943 uc021qeg.2 NG_044372 +HGNC:46205 RN7SL189P RNA, 7SL, cytoplasmic 189, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480973 ENSG00000243817 uc058yvh.1 NG_043542 +HGNC:46206 RN7SL190P RNA, 7SL, cytoplasmic 190, pseudogene pseudogene pseudogene Approved Xq28 Xq28 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479291 ENSG00000264933 uc065azk.1 NG_044382 +HGNC:46207 RN7SL191P RNA, 7SL, cytoplasmic 191, pseudogene pseudogene pseudogene Approved Xq26.1 Xq26.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479292 ENSG00000241198 uc065bcx.1 NG_044392 +HGNC:46208 RN7SL192P RNA, 7SL, cytoplasmic 192, pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-06 106480974 ENSG00000276757 uc060tny.1 NG_045489 +HGNC:46209 RN7SL193P RNA, 7SL, cytoplasmic 193, pseudogene pseudogene pseudogene Approved 4p13 04p13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480493 ENSG00000239679 uc062whm.1 NG_043786 +HGNC:46210 RN7SL194P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46211 RN7SL195P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46212 RN7SL196P RNA, 7SL, cytoplasmic 196, pseudogene pseudogene pseudogene Approved 15q13.2 15q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479293 ENSG00000274424 uc021shk.2 NG_045829 +HGNC:46213 RN7SL197P RNA, 7SL, cytoplasmic 197, pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106480975 ENSG00000276031 uc061xqm.1 NG_043559 +HGNC:46214 RN7SL198P RNA, 7SL, cytoplasmic 198, pseudogene pseudogene pseudogene Approved 10p13 10p13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479294 ENSG00000264036 uc057rta.1 NG_044408 +HGNC:46215 RN7SL199P RNA, 7SL, cytoplasmic 199, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480693 ENSG00000265315 uc060gkx.1 NG_045415 +HGNC:46216 RN7SL200P RNA, 7SL, cytoplasmic 200, pseudogene pseudogene pseudogene Approved 6p21.31 06p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480976 ENSG00000265123 uc063oac.1 NG_045494 +HGNC:46217 RN7SL201P RNA, 7SL, cytoplasmic 201, pseudogene pseudogene pseudogene Approved 2p12 02p12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481830 ENSG00000242118 uc061lds.1 NG_044213 +HGNC:46218 RN7SL202P RNA, 7SL, cytoplasmic 202, pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479295 ENSG00000266627 uc060rtd.1 NG_044416 +HGNC:46219 RN7SL203P RNA, 7SL, cytoplasmic 203, pseudogene pseudogene pseudogene Approved 8q13.3 08q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479296 ENSG00000275128 uc064nox.1 NG_044425 +HGNC:46220 RN7SL204P RNA, 7SL, cytoplasmic 204, pseudogene pseudogene pseudogene Approved 2q37.2 02q37.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480977 ENSG00000264676 uc061tyg.1 NG_045497 +HGNC:46221 RN7SL205P RNA, 7SL, cytoplasmic 205, pseudogene pseudogene pseudogene Approved 4q28.3 04q28.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479297 ENSG00000241392 uc062zoj.1 NG_044433 +HGNC:46222 RN7SL206P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46223 RN7SL207P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46224 RN7SL208P RNA, 7SL, cytoplasmic 208, pseudogene pseudogene pseudogene Approved 5q13.3 05q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480978 ENSG00000264391 uc063ese.1 NG_043586 +HGNC:46225 RN7SL209P RNA, 7SL, cytoplasmic 209, pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480494 ENSG00000240927 uc059oam.1 NG_043794 +HGNC:46226 RN7SL210P RNA, 7SL, cytoplasmic 210, pseudogene pseudogene pseudogene Approved 2q11.1 02q11.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479298 ENSG00000275961 uc061luh.1 NG_044441 +HGNC:46227 RN7SL211P RNA, 7SL, cytoplasmic 211, pseudogene pseudogene pseudogene Approved 2p14 02p14 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479299 ENSG00000244534 uc061juf.1 NG_045848 +HGNC:46228 RN7SL212P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46229 RN7SL213P RNA, 7SL, cytoplasmic 213, pseudogene pseudogene pseudogene Approved 14q24.1 14q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480979 ENSG00000239820 uc059crt.1 NG_045501 +HGNC:46230 RN7SL214P RNA, 7SL, cytoplasmic 214, pseudogene pseudogene pseudogene Approved 15q24.3 15q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479300 ENSG00000242066 uc059man.1 NG_045850 +HGNC:46231 RN7SL215P RNA, 7SL, cytoplasmic 215, pseudogene pseudogene pseudogene Approved 3q29 03q29 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480980 ENSG00000242201 uc062rol.1 NG_043602 +HGNC:46232 RN7SL216P RNA, 7SL, cytoplasmic 216, pseudogene pseudogene pseudogene Approved 3p24.2 03p24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480495 ENSG00000244404 uc062hol.1 NG_043801 +HGNC:46233 RN7SL217P RNA, 7SL, cytoplasmic 217, pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479301 ENSG00000264706 uc062jyr.1 NG_045858 +HGNC:46234 RN7SL218P RNA, 7SL, cytoplasmic 218, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480981 ENSG00000244194 uc062xgu.1 NG_045072 +HGNC:46235 RN7SL219P RNA, 7SL, cytoplasmic 219, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479302 ENSG00000265386 uc059pey.1 NG_044468 +HGNC:46236 RN7SL220P RNA, 7SL, cytoplasmic 220, pseudogene pseudogene pseudogene Approved 10q21.3 10q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479303 ENSG00000266467 uc057tpt.1 NG_045864 +HGNC:46237 RN7SL221P RNA, 7SL, cytoplasmic 221, pseudogene pseudogene pseudogene Approved 6p25.1 06p25.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480982 ENSG00000239472 uc063lpt.1 NG_043616 +HGNC:46238 RN7SL222P RNA, 7SL, cytoplasmic 222, pseudogene pseudogene pseudogene Approved 11q22.1 11q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481831 ENSG00000242165 uc058gtl.1 NG_044220 +HGNC:46239 RN7SL223P RNA, 7SL, cytoplasmic 223, pseudogene pseudogene pseudogene Approved 11q21 11q21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481754 ENSG00000240202 uc058gmm.1 NG_043646 +HGNC:46240 RN7SL224P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46241 RN7SL225P RNA, 7SL, cytoplasmic 225, pseudogene pseudogene pseudogene Approved 11q14.2 11q14.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479304 ENSG00000239856 uc058gge.1 NG_044483 +HGNC:46242 RN7SL226P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46243 RN7SL227P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46244 RN7SL228P RNA, 7SL, cytoplasmic 228, pseudogene pseudogene pseudogene Approved 8q24.11 08q24.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480983 ENSG00000244033 uc064pse.1 NG_043623 +HGNC:46245 RN7SL229P RNA, 7SL, cytoplasmic 229, pseudogene pseudogene pseudogene Approved 3q26.33 03q26.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479305 ENSG00000242811 uc062qhm.1 NG_045869 +HGNC:46246 RN7SL230P RNA, 7SL, cytoplasmic 230, pseudogene pseudogene pseudogene Approved 1q25.2 01q25.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479306 ENSG00000264916 uc057nqw.1 NG_045872 +HGNC:46247 RN7SL231P RNA, 7SL, cytoplasmic 231, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480984 ENSG00000240803 uc060ump.1 NG_043630 +HGNC:46248 RN7SL232P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46249 RN7SL233P RNA, 7SL, cytoplasmic 233, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480985 ENSG00000242971 uc060nux.1 NG_045518 +HGNC:46250 RN7SL234P RNA, 7SL, cytoplasmic 234, pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479307 ENSG00000241391 uc063sdv.1 NG_044508 +HGNC:46251 RN7SL235P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46252 RN7SL236P RNA, 7SL, cytoplasmic 236, pseudogene pseudogene pseudogene Approved 17q25.3 17q25.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480986 ENSG00000243870 uc060kug.1 NG_043643 +HGNC:46253 RN7SL237P RNA, 7SL, cytoplasmic 237, pseudogene pseudogene pseudogene Approved 20q11.23 20q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479308 ENSG00000264767 uc021wdk.2 NG_045877 +HGNC:46254 RN7SL238P RNA, 7SL, cytoplasmic 238, pseudogene pseudogene pseudogene Approved 15q13.1 15q13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106480987 ENSG00000276891 uc059gzc.1 NG_045526 +HGNC:46255 RN7SL239P RNA, 7SL, cytoplasmic 239, pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479309 ENSG00000242999 uc058fkt.1 NG_044526 +HGNC:46256 RN7SL240P RNA, 7SL, cytoplasmic 240, pseudogene pseudogene pseudogene Approved 11p14.1 11p14.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479310 ENSG00000243505 uc057zzp.1 NG_044534 +HGNC:46257 RN7SL241P RNA, 7SL, cytoplasmic 241, pseudogene pseudogene pseudogene Approved 10p11.23 10p11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480988 ENSG00000239625 uc057snk.1 NG_045529 +HGNC:46258 RN7SL242P RNA, 7SL, cytoplasmic 242, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480496 ENSG00000244389 uc057hlj.1 NG_045585 +HGNC:46259 RN7SL243P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46260 RN7SL244P RNA, 7SL, cytoplasmic 244, pseudogene pseudogene pseudogene Approved 6p12.1 06p12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479311 ENSG00000242865 uc063pbl.1 NG_045886 +HGNC:46261 RN7SL245P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46262 RN7SL246P RNA, 7SL, cytoplasmic 246, pseudogene pseudogene pseudogene Approved 12q12 12q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480989 ENSG00000265093 uc058myc.1 NG_045533 +HGNC:46263 RN7SL247P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46264 RN7SL248P RNA, 7SL, cytoplasmic 248, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 RN7SL527P RNA, 7SL, cytoplasmic 527, pseudogene RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479312 ENSG00000274186 uc057tba.1 NG_044548 +HGNC:46266 RN7SL250P RNA, 7SL, cytoplasmic 250, pseudogene pseudogene pseudogene Approved 8q11.23 08q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479313 ENSG00000244107 uc064mwu.1 NG_044555 +HGNC:46267 RN7SL251P RNA, 7SL, cytoplasmic 251, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480990 ENSG00000244399 uc061lgz.1 NG_045083 +HGNC:46268 RN7SL252P RNA, 7SL, cytoplasmic 252, pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481832 ENSG00000244318 uc064fpg.1 NG_045147 +HGNC:46269 RN7SL253P RNA, 7SL, cytoplasmic 253, pseudogene pseudogene pseudogene Approved 4q34.1 04q34.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479314 ENSG00000241652 uc063ayv.1 NG_045180 +HGNC:46270 RN7SL254P RNA, 7SL, cytoplasmic 254, pseudogene pseudogene pseudogene Approved 4q31.23 04q31.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480991 ENSG00000240014 uc021xsp.2 NG_045541 +HGNC:46271 RN7SL255P RNA, 7SL, cytoplasmic 255, pseudogene pseudogene pseudogene Approved 5q21.2 05q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479315 ENSG00000239808 uc063fvc.1 NG_044571 +HGNC:46272 RN7SL256P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46274 RN7SL258P RNA, 7SL, cytoplasmic 258, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480373 ENSG00000240589 uc021tyd.2 NG_046010 +HGNC:46275 RN7SL259P RNA, 7SL, cytoplasmic 259, pseudogene pseudogene pseudogene Approved 11q12.3 11q12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480992 ENSG00000241082 uc058cqi.1 NG_043690 +HGNC:46276 RN7SL260P RNA, 7SL, cytoplasmic 260, pseudogene pseudogene pseudogene Approved 8q24.3 08q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106480497 ENSG00000253602 uc064qui.1 NG_045587 +HGNC:46277 RN7SL261P RNA, 7SL, cytoplasmic 261, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479316 ENSG00000277762 uc057kfe.1 NG_044580 +HGNC:46278 RN7SL262P RNA, 7SL, cytoplasmic 262, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479317 ENSG00000265033 uc064zen.1 NG_044589 +HGNC:46279 RN7SL263P RNA, 7SL, cytoplasmic 263, pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480993 ENSG00000240160 uc062cex.1 NG_045086 +HGNC:46280 RN7SL264P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46281 RN7SL265P RNA, 7SL, cytoplasmic 265, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479318 ENSG00000241709 uc064egw.1 NG_045183 +HGNC:46282 RN7SL266P RNA, 7SL, cytoplasmic 266, pseudogene pseudogene pseudogene Approved Xq23 Xq23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480994 ENSG00000243011 uc065atx.1 NG_043703 +HGNC:46283 RN7SL267P RNA, 7SL, cytoplasmic 267, pseudogene pseudogene pseudogene Approved 2q32.1 02q32.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481833 ENSG00000242121 uc061qjv.1 NG_045148 +HGNC:46284 RN7SL268P RNA, 7SL, cytoplasmic 268, pseudogene pseudogene pseudogene Approved 22q11.23 22q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479319 ENSG00000244425 uc062chy.1 NG_044607 +HGNC:46285 RN7SL269P RNA, 7SL, cytoplasmic 269, pseudogene pseudogene pseudogene Approved 1q24.2 01q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479320 ENSG00000243051 uc057nfb.1 NG_045910 +HGNC:46286 RN7SL270P RNA, 7SL, cytoplasmic 270, pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106480995 ENSG00000277198 uc060gme.1 NG_046319 +HGNC:46287 RN7SL271P RNA, 7SL, cytoplasmic 271, pseudogene pseudogene pseudogene Approved 3p13 03p13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479321 ENSG00000239250 uc062lmk.1 NG_044624 +HGNC:46288 RN7SL272P RNA, 7SL, cytoplasmic 272, pseudogene pseudogene pseudogene Approved 13q12.2 13q12.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480996 ENSG00000242360 uc058wbz.1 NG_043717 +HGNC:46289 RN7SL273P RNA, 7SL, cytoplasmic 273, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481834 ENSG00000239953 uc063oga.1 NG_045780 +HGNC:46290 RN7SL274P RNA, 7SL, cytoplasmic 274, pseudogene pseudogene pseudogene Approved 16p13.12 16p13.12 RN7SL694P RNA, 7SL, cytoplasmic 694, pseudogene RNAs, 7SL, cytoplasmic 850 2013-04-02 2016-02-10 106479322 ENSG00000242430 uc059yyf.1 NG_045918 +HGNC:46291 RN7SL275P RNA, 7SL, cytoplasmic 275, pseudogene pseudogene pseudogene Approved 4q25 04q25 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480997 ENSG00000263940 uc062yzw.1 NG_045091 +HGNC:46292 RN7SL276P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46293 RN7SL277P RNA, 7SL, cytoplasmic 277, pseudogene pseudogene pseudogene Approved 1p36.13 01p36.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479323 ENSG00000240490 uc021ohs.2 NG_044639 +HGNC:46294 RN7SL278P RNA, 7SL, cytoplasmic 278, pseudogene pseudogene pseudogene Approved 15q24.3 15q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479324 ENSG00000243365 uc059lxu.1 NG_044645 +HGNC:46295 RN7SL279P RNA, 7SL, cytoplasmic 279, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480998 ENSG00000265648 uc059woo.1 NG_043734 +HGNC:46296 RN7SL280P RNA, 7SL, cytoplasmic 280, pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480498 ENSG00000244671 uc062bzz.1 NG_045590 +HGNC:46297 RN7SL281P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46298 RN7SL282P RNA, 7SL, cytoplasmic 282, pseudogene pseudogene pseudogene Approved 18p11.31 18p11.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480374 ENSG00000243591 uc060ncf.1 NG_044866 +HGNC:46299 RN7SL283P RNA, 7SL, cytoplasmic 283, pseudogene pseudogene pseudogene Approved 2q22.1 02q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479325 ENSG00000240977 uc061odm.1 NG_044652 +HGNC:46300 RN7SL284P RNA, 7SL, cytoplasmic 284, pseudogene pseudogene pseudogene Approved 10q22.3 10q22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480999 ENSG00000243446 uc057ujt.1 NG_045558 +HGNC:46301 RN7SL285P RNA, 7SL, cytoplasmic 285, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479326 ENSG00000243313 uc063ogw.1 NG_044659 +HGNC:46302 RN7SL286P RNA, 7SL, cytoplasmic 286, pseudogene pseudogene pseudogene Approved 15q13.3 15q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479327 ENSG00000277464 uc059heh.1 NG_045938 +HGNC:46303 RN7SL287P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46304 RN7SL288P RNA, 7SL, cytoplasmic 288, pseudogene pseudogene pseudogene Approved 13q14.13 13q14.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481000 ENSG00000240767 uc058wwk.1 NG_045562 +HGNC:46305 RN7SL289P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46306 RN7SL290P RNA, 7SL, cytoplasmic 290, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481001 ENSG00000264613 uc057gne.1 NG_043758 +HGNC:46307 RN7SL291P RNA, 7SL, cytoplasmic 291, pseudogene pseudogene pseudogene Approved Xp11.3 Xp11.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479328 ENSG00000242065 uc064yrt.1 NG_044671 +HGNC:46308 RN7SL292P RNA, 7SL, cytoplasmic 292, pseudogene pseudogene pseudogene Approved 7p12.1 07p12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481002 ENSG00000242650 uc064drm.1 NG_043763 +HGNC:46309 RN7SL293P RNA, 7SL, cytoplasmic 293, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481835 ENSG00000242483 uc064kft.1 NG_044253 +HGNC:46310 RN7SL294P RNA, 7SL, cytoplasmic 294, pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479329 ENSG00000242638 uc062lov.1 NG_044680 +HGNC:46311 RN7SL295P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46312 RN7SL296P RNA, 7SL, cytoplasmic 296, pseudogene pseudogene pseudogene Approved 3p22.3 03p22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481003 ENSG00000275090 uc062hwp.1 NG_043770 +HGNC:46313 RN7SL297P RNA, 7SL, cytoplasmic 297, pseudogene pseudogene pseudogene Approved 2q13 02q13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479330 ENSG00000240183 uc021vmv.2 NG_045951 +HGNC:46314 RN7SL298P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46315 RN7SL299P RNA, 7SL, cytoplasmic 299, pseudogene pseudogene pseudogene Approved 1q42.2 01q42.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479331 ENSG00000242794 uc057qjx.1 NG_044699 +HGNC:46316 RN7SL300P RNA, 7SL, cytoplasmic 300, pseudogene pseudogene pseudogene Approved 3q25.2 03q25.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481004 ENSG00000265813 uc062pde.1 NG_043779 +HGNC:46317 RN7SL301P RNA, 7SL, cytoplasmic 301, pseudogene pseudogene pseudogene Approved 17q12 17q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106480499 ENSG00000276014 uc060mpr.1 NG_043835 +HGNC:46318 RN7SL302P RNA, 7SL, cytoplasmic 302, pseudogene pseudogene pseudogene Approved 9q33.3 09q33.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479332 ENSG00000241246 uc064vqg.1 NG_044709 +HGNC:46319 RN7SL303P RNA, 7SL, cytoplasmic 303, pseudogene pseudogene pseudogene Approved 8p21.3 08p21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481005 ENSG00000240116 uc064lcv.1 NG_043788 +HGNC:46320 RN7SL304P RNA, 7SL, cytoplasmic 304, pseudogene pseudogene pseudogene Approved 1p36.13 01p36.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479333 ENSG00000242688 uc057cxy.1 NG_044717 +HGNC:46321 RN7SL305P RNA, 7SL, cytoplasmic 305, pseudogene pseudogene pseudogene Approved 22q12.3 22q12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479334 ENSG00000240647 uc062dmi.1 NG_044726 +HGNC:46322 RN7SL306P RNA, 7SL, cytoplasmic 306, pseudogene pseudogene pseudogene Approved 7q32.1 07q32.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481006 ENSG00000242241 uc064hwp.1 NG_043795 +HGNC:46323 RN7SL307P RNA, 7SL, cytoplasmic 307, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480500 ENSG00000243338 uc059jar.1 NG_043844 +HGNC:46324 RN7SL308P RNA, 7SL, cytoplasmic 308, pseudogene pseudogene pseudogene Approved 8q21.13 08q21.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479335 ENSG00000243951 uc064nyu.1 NG_045963 +HGNC:46325 RN7SL309P RNA, 7SL, cytoplasmic 309, pseudogene pseudogene pseudogene Approved 11q13.1 11q13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481007 ENSG00000239356 uc058dof.1 NG_043803 +HGNC:46326 RN7SL310P RNA, 7SL, cytoplasmic 310, pseudogene pseudogene pseudogene Approved 18q21.1 18q21.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479336 ENSG00000240663 uc060pcz.1 NG_044743 +HGNC:46327 RN7SL311P RNA, 7SL, cytoplasmic 311, pseudogene pseudogene pseudogene Approved 4q31.1 04q31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481755 ENSG00000265892 uc021xry.1 NG_043654 +HGNC:46328 RN7SL312P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46329 RN7SL313P RNA, 7SL, cytoplasmic 313, pseudogene pseudogene pseudogene Approved 2q11.2 02q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481008 ENSG00000275655 uc061lyj.1 NG_045097 +HGNC:46330 RN7SL314P RNA, 7SL, cytoplasmic 314, pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481836 ENSG00000244402 uc057sug.1 NG_044260 +HGNC:46331 RN7SL315P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46332 RN7SL316P RNA, 7SL, cytoplasmic 316, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479337 ENSG00000241631 uc060don.1 NG_044751 +HGNC:46333 RN7SL317P RNA, 7SL, cytoplasmic 317, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479338 ENSG00000242668 uc061cks.1 NG_044761 +HGNC:46334 RN7SL318P RNA, 7SL, cytoplasmic 318, pseudogene pseudogene pseudogene Approved 8p23.2 08p23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481009 ENSG00000242079 uc064kaf.1 NG_043820 +HGNC:46335 RN7SL319P RNA, 7SL, cytoplasmic 319, pseudogene pseudogene pseudogene Approved 15q24.2 15q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479339 ENSG00000241807 uc059lus.1 NG_045974 +HGNC:46336 RN7SL320P RNA, 7SL, cytoplasmic 320, pseudogene pseudogene pseudogene Approved 13q14.3 13q14.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481010 ENSG00000243900 uc058xfc.1 NG_043829 +HGNC:46337 RN7SL321P RNA, 7SL, cytoplasmic 321, pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106480501 ENSG00000277483 uc021wxm.2 NG_045601 +HGNC:46338 RN7SL322P RNA, 7SL, cytoplasmic 322, pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479340 ENSG00000276588 uc061anb.1 NG_044777 +HGNC:46339 RN7SL323P RNA, 7SL, cytoplasmic 323, pseudogene pseudogene pseudogene Approved 8q12.1 08q12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479341 ENSG00000241997 uc064myc.1 NG_044784 +HGNC:46340 RN7SL324P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46341 RN7SL325P RNA, 7SL, cytoplasmic 325, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481011 ENSG00000239579 uc065biw.1 NG_043837 +HGNC:46342 RN7SL326P RNA, 7SL, cytoplasmic 326, pseudogene pseudogene pseudogene Approved 1p34.2 01p34.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479342 ENSG00000264582 uc057fgv.1 NG_045982 +HGNC:46343 RN7SL327P RNA, 7SL, cytoplasmic 327, pseudogene pseudogene pseudogene Approved 15q24.2 15q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481012 ENSG00000275992 uc059lpv.1 NG_045597 +HGNC:46344 RN7SL328P RNA, 7SL, cytoplasmic 328, pseudogene pseudogene pseudogene Approved 9q34.13 09q34.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481837 ENSG00000240853 uc064wrr.1 NG_045787 +HGNC:46345 RN7SL329P RNA, 7SL, cytoplasmic 329, pseudogene pseudogene pseudogene Approved 8q24.13 08q24.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479343 ENSG00000242170 uc022bax.2 NG_045987 +HGNC:46346 RN7SL330P RNA, 7SL, cytoplasmic 330, pseudogene pseudogene pseudogene Approved 12q22 12q22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481013 ENSG00000244391 uc058ruw.1 NG_043850 +HGNC:46347 RN7SL331P RNA, 7SL, cytoplasmic 331, pseudogene pseudogene pseudogene Approved 15q25.2 15q25.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479344 ENSG00000278422 uc059mre.1 NG_045990 +HGNC:46348 RN7SL332P RNA, 7SL, cytoplasmic 332, pseudogene pseudogene pseudogene Approved 6p23 06p23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479345 ENSG00000242989 uc063lzl.1 NG_044819 +HGNC:46349 RN7SL333P RNA, 7SL, cytoplasmic 333, pseudogene pseudogene pseudogene Approved 1q24.2 01q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481014 ENSG00000239494 uc021peo.1 NG_043855 +HGNC:46350 RN7SL334P RNA, 7SL, cytoplasmic 334, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480502 ENSG00000244618 uc063mey.1 NG_051606 +HGNC:46351 RN7SL335P RNA, 7SL, cytoplasmic 335, pseudogene pseudogene pseudogene Approved 4q27 04q27 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480375 ENSG00000241037 uc021xrl.2 NG_044870 +HGNC:46352 RN7SL336P RNA, 7SL, cytoplasmic 336, pseudogene pseudogene pseudogene Approved 6q15 06q15 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479346 ENSG00000264017 uc063qap.1 NG_044827 +HGNC:46353 RN7SL337P RNA, 7SL, cytoplasmic 337, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481015 ENSG00000243488 uc060uqf.1 NG_045612 +HGNC:46354 RN7SL338P RNA, 7SL, cytoplasmic 338, pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479347 ENSG00000241568 uc022bgi.2 NG_044835 +HGNC:46355 RN7SL339P RNA, 7SL, cytoplasmic 339, pseudogene pseudogene pseudogene Approved 5q35.1 05q35.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479348 ENSG00000265740 uc063jpz.1 NG_044843 +HGNC:46356 RN7SL340P RNA, 7SL, cytoplasmic 340, pseudogene pseudogene pseudogene Approved 19q12 19q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481016 ENSG00000241604 uc060wny.1 NG_045102 +HGNC:46357 RN7SL341P RNA, 7SL, cytoplasmic 341, pseudogene pseudogene pseudogene Approved 2p14 02p14 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481017 ENSG00000275588 uc061juc.1 NG_043875 +HGNC:46358 RN7SL342P RNA, 7SL, cytoplasmic 342, pseudogene pseudogene pseudogene Approved 18q21.32 18q21.32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479349 ENSG00000239398 uc060prv.1 NG_044852 +HGNC:46359 RN7SL343P RNA, 7SL, cytoplasmic 343, pseudogene pseudogene pseudogene Approved 9p11.2 09p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481018 ENSG00000273717 uc064thy.1 NG_045105 +HGNC:46360 RN7SL344P RNA, 7SL, cytoplasmic 344, pseudogene pseudogene pseudogene Approved 1q32.3 01q32.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480503 ENSG00000241395 uc057pek.1 NG_045610 +HGNC:46361 RN7SL345P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46362 RN7SL346P RNA, 7SL, cytoplasmic 346, pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479350 ENSG00000240470 uc059ndm.1 NG_044862 +HGNC:46363 RN7SL347P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46364 RN7SL348P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46365 RN7SL349P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46366 RN7SL350P RNA, 7SL, cytoplasmic 350, pseudogene pseudogene pseudogene Approved 8q22.2 08q22.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481019 ENSG00000243254 uc064oyq.1 NG_043890 +HGNC:46367 RN7SL351P RNA, 7SL, cytoplasmic 351, pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479351 ENSG00000240098 uc058ixy.1 NG_046016 +HGNC:46368 RN7SL352P RNA, 7SL, cytoplasmic 352, pseudogene pseudogene pseudogene Approved 6p25.3 06p25.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479352 ENSG00000243439 uc063ljs.1 NG_044875 +HGNC:46369 RN7SL353P RNA, 7SL, cytoplasmic 353, pseudogene pseudogene pseudogene Approved 6p21.33 06p21.33 RN7SL579P RNA, 7SL, cytoplasmic 579, pseudogene RNAs, 7SL, cytoplasmic 850 2013-04-02 2016-04-01 106481020 ENSG00000263608 uc063mux.1 NG_043899 +HGNC:46370 RN7SL354P RNA, 7SL, cytoplasmic 354, pseudogene pseudogene pseudogene Approved 15q21.2 15q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481838 ENSG00000243027 uc059jel.1 NG_044278 +HGNC:46371 RN7SL355P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46372 RN7SL356P RNA, 7SL, cytoplasmic 356, pseudogene pseudogene pseudogene Approved 14q24.3 14q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479353 ENSG00000266553 uc059drn.1 NG_044883 +HGNC:46373 RN7SL357P RNA, 7SL, cytoplasmic 357, pseudogene pseudogene pseudogene Approved 4q12 04q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481021 ENSG00000265894 uc062wvn.1 NG_043906 +HGNC:46374 RN7SL358P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46375 RN7SL359P RNA, 7SL, cytoplasmic 359, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479354 ENSG00000244384 uc021vyj.2 NG_045204 +HGNC:46376 RN7SL360P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46377 RN7SL361P RNA, 7SL, cytoplasmic 361, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479355 ENSG00000242158 uc061jlc.1 NG_045205 +HGNC:46378 RN7SL362P RNA, 7SL, cytoplasmic 362, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481022 ENSG00000242707 uc060nrh.1 NG_045628 +HGNC:46379 RN7SL363P RNA, 7SL, cytoplasmic 363, pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480504 ENSG00000241869 uc059ngm.1 NG_043866 +HGNC:46380 RN7SL364P RNA, 7SL, cytoplasmic 364, pseudogene pseudogene pseudogene Approved 19q13.32 19q13.32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479356 ENSG00000243560 uc061ahf.1 NG_046031 +HGNC:46381 RN7SL365P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46382 RN7SL366P RNA, 7SL, cytoplasmic 366, pseudogene pseudogene pseudogene Approved 6q26 06q26 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481023 ENSG00000266128 uc063stw.1 NG_043916 +HGNC:46383 RN7SL367P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46384 RN7SL368P RNA, 7SL, cytoplasmic 368, pseudogene pseudogene pseudogene Approved 19q13.31 19q13.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479357 ENSG00000239948 uc060znc.1 NG_046035 +HGNC:46385 RN7SL369P RNA, 7SL, cytoplasmic 369, pseudogene pseudogene pseudogene Approved 14q24.1 14q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480694 ENSG00000241542 uc059crm.1 NG_043362 +HGNC:46386 RN7SL370P RNA, 7SL, cytoplasmic 370, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481024 ENSG00000243437 uc057htx.1 NG_043921 +HGNC:46387 RN7SL371P RNA, 7SL, cytoplasmic 371, pseudogene pseudogene pseudogene Approved 7q11.22 07q11.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481839 ENSG00000266210 uc057ecp.1 NG_044287 +HGNC:46388 RN7SL372P RNA, 7SL, cytoplasmic 372, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479358 ENSG00000242565 uc057lcz.1 NG_044920 +HGNC:46389 RN7SL373P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46390 RN7SL374P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46391 RN7SL375P RNA, 7SL, cytoplasmic 375, pseudogene pseudogene pseudogene Approved 13q21.2 13q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479359 ENSG00000265745 uc058xil.1 NG_046043 +HGNC:46392 RN7SL376P RNA, 7SL, cytoplasmic 376, pseudogene pseudogene pseudogene Approved 15q15.1 15q15.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481025 ENSG00000265814 uc059htp.1 NG_043928 +HGNC:46393 RN7SL377P RNA, 7SL, cytoplasmic 377, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479360 ENSG00000266569 uc064edk.1 NG_042901 +HGNC:46394 RN7SL378P RNA, 7SL, cytoplasmic 378, pseudogene pseudogene pseudogene Approved 5q14.1 05q14.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481026 ENSG00000265684 uc063far.1 NG_045644 +HGNC:46395 RN7SL379P RNA, 7SL, cytoplasmic 379, pseudogene pseudogene pseudogene Approved Xq21.33 Xq21.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480505 ENSG00000242998 uc065aey.1 NG_043874 +HGNC:46396 RN7SL380P RNA, 7SL, cytoplasmic 380, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479361 ENSG00000244532 uc058kku.1 NG_042908 +HGNC:46397 RN7SL381P RNA, 7SL, cytoplasmic 381, pseudogene pseudogene pseudogene Approved 16q24.1 16q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479362 ENSG00000263968 uc059xze.1 NG_045242 +HGNC:46398 RN7SL382P RNA, 7SL, cytoplasmic 382, pseudogene pseudogene pseudogene Approved 4q31.1 04q31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481027 ENSG00000240723 uc062zrr.1 NG_043943 +HGNC:46399 RN7SL383P RNA, 7SL, cytoplasmic 383, pseudogene pseudogene pseudogene Approved 5p12 05p12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479363 ENSG00000263556 uc063dkq.1 NG_042921 +HGNC:46400 RN7SL384P RNA, 7SL, cytoplasmic 384, pseudogene pseudogene pseudogene Approved 10q25.3 10q25.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481028 ENSG00000242912 uc057wcp.1 NG_043952 +HGNC:46401 RN7SL385P RNA, 7SL, cytoplasmic 385, pseudogene pseudogene pseudogene Approved 22q13.1 22q13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481840 ENSG00000241333 uc062dzn.1 NG_045794 +HGNC:46402 RN7SL386P RNA, 7SL, cytoplasmic 386, pseudogene pseudogene pseudogene Approved 1p36.12 01p36.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479364 ENSG00000273610 uc057ddd.1 NG_045250 +HGNC:46403 RN7SL387P RNA, 7SL, cytoplasmic 387, pseudogene pseudogene pseudogene Approved 12q24.11 12q24.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481029 ENSG00000263537 uc058tfc.1 NG_043957 +HGNC:46404 RN7SL388P RNA, 7SL, cytoplasmic 388, pseudogene pseudogene pseudogene Approved Xq13.1 Xq13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479365 ENSG00000239577 uc064zwr.1 NG_045253 +HGNC:46405 RN7SL389P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46406 RN7SL390P RNA, 7SL, cytoplasmic 390, pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479366 ENSG00000241785 uc058ovj.1 NG_045257 +HGNC:46407 RN7SL391P RNA, 7SL, cytoplasmic 391, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481030 ENSG00000265388 uc058kdh.1 NG_043965 +HGNC:46408 RN7SL392P RNA, 7SL, cytoplasmic 392, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480506 ENSG00000242482 uc057hjz.1 NG_043882 +HGNC:46409 RN7SL393P RNA, 7SL, cytoplasmic 393, pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481756 ENSG00000243723 uc061oul.1 NG_045080 +HGNC:46410 RN7SL394P RNA, 7SL, cytoplasmic 394, pseudogene pseudogene pseudogene Approved 10q21.3 10q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479367 ENSG00000239942 uc057tpi.1 NG_045262 +HGNC:46411 RN7SL395P RNA, 7SL, cytoplasmic 395, pseudogene pseudogene pseudogene Approved 8q24.3 08q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481031 ENSG00000244307 uc064rps.1 NG_043972 +HGNC:46412 RN7SL396P RNA, 7SL, cytoplasmic 396, pseudogene pseudogene pseudogene Approved 8q24.12 08q24.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479368 ENSG00000244642 uc064puh.1 NG_042962 +HGNC:46413 RN7SL397P RNA, 7SL, cytoplasmic 397, pseudogene pseudogene pseudogene Approved 3q13.33 03q13.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479369 ENSG00000244139 uc062mwi.1 NG_042971 +HGNC:46414 RN7SL398P RNA, 7SL, cytoplasmic 398, pseudogene pseudogene pseudogene Approved 10p11.22 10p11.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481032 ENSG00000244356 uc021poy.2 NG_045666 +HGNC:46415 RN7SL399P RNA, 7SL, cytoplasmic 399, pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479370 ENSG00000239542 uc060fct.1 NG_045270 +HGNC:46416 RN7SL400P RNA, 7SL, cytoplasmic 400, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481033 ENSG00000243059 uc059gpv.1 NG_043987 +HGNC:46417 RN7SL401P RNA, 7SL, cytoplasmic 401, pseudogene pseudogene pseudogene Approved 18q22.3 18q22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480507 ENSG00000241866 uc060qbc.1 NG_043889 +HGNC:46418 RN7SL402P RNA, 7SL, cytoplasmic 402, pseudogene pseudogene pseudogene Approved 19q13.12 19q13.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479371 ENSG00000243968 uc060xki.1 NG_045009 +HGNC:46419 RN7SL403P RNA, 7SL, cytoplasmic 403, pseudogene pseudogene pseudogene Approved 6p21.1 06p21.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481034 ENSG00000240625 uc063oou.1 NG_045676 +HGNC:46420 RN7SL404P RNA, 7SL, cytoplasmic 404, pseudogene pseudogene pseudogene Approved 17q24.1 17q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479372 ENSG00000264840 uc060iyf.1 NG_045277 +HGNC:46421 RN7SL405P RNA, 7SL, cytoplasmic 405, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479373 ENSG00000264540 uc060gcz.1 NG_043007 +HGNC:46422 RN7SL406P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46423 RN7SL407P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46424 RN7SL408P RNA, 7SL, cytoplasmic 408, pseudogene pseudogene pseudogene Approved 6q23.2 06q23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481841 ENSG00000266875 uc063rnh.1 NG_045796 +HGNC:46425 RN7SL409P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46426 RN7SL410P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46427 RN7SL411P RNA, 7SL, cytoplasmic 411, pseudogene pseudogene pseudogene Approved 3p22.1 03p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481035 ENSG00000265327 uc062iku.1 NG_045679 +HGNC:46428 RN7SL412P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46429 RN7SL413P RNA, 7SL, cytoplasmic 413, pseudogene pseudogene pseudogene Approved 13q14.3 13q14.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479374 ENSG00000242893 uc058xfj.1 NG_043014 +HGNC:46430 RN7SL414P RNA, 7SL, cytoplasmic 414, pseudogene pseudogene pseudogene Approved 2p21 02p21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481036 ENSG00000239396 uc061iue.1 NG_045681 +HGNC:46431 RN7SL415P RNA, 7SL, cytoplasmic 415, pseudogene pseudogene pseudogene Approved 6q15 06q15 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479375 ENSG00000240961 uc063qdf.1 NG_043024 +HGNC:46432 RN7SL416P RNA, 7SL, cytoplasmic 416, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481037 ENSG00000242101 uc064gev.1 NG_045120 +HGNC:46433 RN7SL417P RNA, 7SL, cytoplasmic 417, pseudogene pseudogene pseudogene Approved 15q25.2 15q25.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 107080636 ENSG00000244056 uc059mrk.1 NG_046397 +HGNC:46434 RN7SL418P RNA, 7SL, cytoplasmic 418, pseudogene pseudogene pseudogene Approved 3p13 03p13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480508 ENSG00000241665 uc021xak.2 NG_043897 +HGNC:46435 RN7SL419P RNA, 7SL, cytoplasmic 419, pseudogene pseudogene pseudogene Approved 4q31.3 04q31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479376 ENSG00000243883 uc063ahy.1 NG_043031 +HGNC:46436 RN7SL420P RNA, 7SL, cytoplasmic 420, pseudogene pseudogene pseudogene Approved 1p13.1 01p13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479377 ENSG00000239984 uc057jrg.1 NG_043042 +HGNC:46437 RN7SL421P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46438 RN7SL422P RNA, 7SL, cytoplasmic 422, pseudogene pseudogene pseudogene Approved 9p13.1 09p13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481038 ENSG00000274852 uc022bhb.2 NG_044024 +HGNC:46439 RN7SL423P RNA, 7SL, cytoplasmic 423, pseudogene pseudogene pseudogene Approved 2q24.2 02q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479378 ENSG00000244372 uc061oxn.1 NG_043052 +HGNC:46440 RN7SL424P RNA, 7SL, cytoplasmic 424, pseudogene pseudogene pseudogene Approved 4q12 04q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480376 ENSG00000244034 uc062wrm.1 NG_044878 +HGNC:46441 RN7SL425P RNA, 7SL, cytoplasmic 425, pseudogene pseudogene pseudogene Approved 1q24.3 01q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481039 ENSG00000239373 uc057nhi.1 NG_045687 +HGNC:46442 RN7SL426P RNA, 7SL, cytoplasmic 426, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481842 ENSG00000263815 uc060csd.1 NG_044312 +HGNC:46444 RN7SL428P RNA, 7SL, cytoplasmic 428, pseudogene pseudogene pseudogene Approved 15q25.3 15q25.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479379 ENSG00000277582 uc059mub.1 NG_045296 +HGNC:46445 RN7SL429P RNA, 7SL, cytoplasmic 429, pseudogene pseudogene pseudogene Approved 15q24.1 15q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479380 ENSG00000278604 uc059lgj.1 NG_045301 +HGNC:46446 RN7SL430P RNA, 7SL, cytoplasmic 430, pseudogene pseudogene pseudogene Approved 9q32 09q32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481040 ENSG00000243911 uc064vcf.1 NG_045691 +HGNC:46447 RN7SL431P RNA, 7SL, cytoplasmic 431, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106866913 ENSG00000264384 uc057lgf.1 NG_046324 +HGNC:46448 RN7SL432P RNA, 7SL, cytoplasmic 432, pseudogene pseudogene pseudogene Approved 1p13.2 01p13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481041 ENSG00000242769 uc057jpy.1 NG_044049 +HGNC:46450 RN7SL434P RNA, 7SL, cytoplasmic 434, pseudogene pseudogene pseudogene Approved 3q29 03q29 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480509 ENSG00000241868 uc062sbl.1 NG_045624 +HGNC:46451 RN7SL435P RNA, 7SL, cytoplasmic 435, pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479381 ENSG00000263944 uc058brk.1 NG_045306 +HGNC:46452 RN7SL436P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46453 RN7SL437P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46454 RN7SL438P RNA, 7SL, cytoplasmic 438, pseudogene pseudogene pseudogene Approved 15q23 15q23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479382 ENSG00000241774 uc059ksw.1 NG_043083 +HGNC:46455 RN7SL439P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46456 RN7SL440P RNA, 7SL, cytoplasmic 440, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481042 ENSG00000264963 uc057ili.1 NG_044057 +HGNC:46457 RN7SL441P RNA, 7SL, cytoplasmic 441, pseudogene pseudogene pseudogene Approved 12q24.11 12q24.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479383 ENSG00000241413 uc058tao.1 NG_045312 +HGNC:46458 RN7SL442P RNA, 7SL, cytoplasmic 442, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481043 ENSG00000239221 uc060brc.1 NG_044067 +HGNC:46459 RN7SL443P RNA, 7SL, cytoplasmic 443, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480510 ENSG00000241229 uc061xee.1 NG_045627 +HGNC:46460 RN7SL444P RNA, 7SL, cytoplasmic 444, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479384 ENSG00000265753 uc057kun.1 NG_045315 +HGNC:46461 RN7SL445P RNA, 7SL, cytoplasmic 445, pseudogene pseudogene pseudogene Approved 10p15.1 10p15.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481044 ENSG00000240577 uc057rjt.1 NG_044077 +HGNC:46462 RN7SL446P RNA, 7SL, cytoplasmic 446, pseudogene pseudogene pseudogene Approved 4q31.3 04q31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479385 ENSG00000244544 uc063agl.1 NG_043111 +HGNC:46463 RN7SL447P RNA, 7SL, cytoplasmic 447, pseudogene pseudogene pseudogene Approved 3q29 03q29 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479386 ENSG00000243991 uc062rmy.1 NG_045321 +HGNC:46464 RN7SL448P RNA, 7SL, cytoplasmic 448, pseudogene pseudogene pseudogene Approved 17q23.2 17q23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481843 ENSG00000264322 uc060iir.1 NG_045801 +HGNC:46465 RN7SL449P RNA, 7SL, cytoplasmic 449, pseudogene pseudogene pseudogene Approved 17q22 17q22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481045 ENSG00000242889 uc060hvd.1 NG_045703 +HGNC:46466 RN7SL450P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46467 RN7SL451P RNA, 7SL, cytoplasmic 451, pseudogene pseudogene pseudogene Approved 1p36.23 01p36.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480377 ENSG00000265141 uc057cab.1 NG_044886 +HGNC:46468 RN7SL452P RNA, 7SL, cytoplasmic 452, pseudogene pseudogene pseudogene Approved 14q22.1 14q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479387 ENSG00000243103 uc059bkb.1 NG_045326 +HGNC:46469 RN7SL453P RNA, 7SL, cytoplasmic 453, pseudogene pseudogene pseudogene Approved 10q11.22 10q11.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481046 ENSG00000276544 uc057tbz.1 NG_044092 +HGNC:46470 RN7SL454P RNA, 7SL, cytoplasmic 454, pseudogene pseudogene pseudogene Approved 17q25.3 17q25.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479388 ENSG00000243426 uc021uef.2 NG_045329 +HGNC:46471 RN7SL455P RNA, 7SL, cytoplasmic 455, pseudogene pseudogene pseudogene Approved 2q24.3 02q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479389 ENSG00000264047 uc061iry.1 NG_045022 +HGNC:46472 RN7SL456P RNA, 7SL, cytoplasmic 456, pseudogene pseudogene pseudogene Approved 7q35 07q35 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480511 ENSG00000242266 uc022aos.2 NG_045109 +HGNC:46473 RN7SL457P RNA, 7SL, cytoplasmic 457, pseudogene pseudogene pseudogene Approved 8p12 08p12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481047 ENSG00000263794 uc022atv.2 NG_044103 +HGNC:46474 RN7SL458P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46475 RN7SL459P RNA, 7SL, cytoplasmic 459, pseudogene pseudogene pseudogene Approved 12p12.3 12p12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479390 ENSG00000240993 uc058lsk.1 NG_043152 +HGNC:46476 RN7SL460P RNA, 7SL, cytoplasmic 460, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481048 ENSG00000263410 uc065abu.1 NG_044111 +HGNC:46477 RN7SL461P RNA, 7SL, cytoplasmic 461, pseudogene pseudogene pseudogene Approved 14q22.3 14q22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481844 ENSG00000243801 uc059bvw.1 NG_045804 +HGNC:46478 RN7SL462P RNA, 7SL, cytoplasmic 462, pseudogene pseudogene pseudogene Approved 9p13.1 09p13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479391 ENSG00000276522 uc064tja.1 NG_043159 +HGNC:46479 RN7SL463P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46480 RN7SL464P RNA, 7SL, cytoplasmic 464, pseudogene pseudogene pseudogene Approved 1q41 01q41 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481049 ENSG00000243872 uc057pof.1 NG_044118 +HGNC:46481 RN7SL465P RNA, 7SL, cytoplasmic 465, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479392 ENSG00000244297 uc063oho.1 NG_045345 +HGNC:46482 RN7SL466P RNA, 7SL, cytoplasmic 466, pseudogene pseudogene pseudogene Approved 1q23.3 01q23.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479393 ENSG00000241347 uc057mtw.1 NG_045351 +HGNC:46483 RN7SL467P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46484 RN7SL468P RNA, 7SL, cytoplasmic 468, pseudogene pseudogene pseudogene Approved 2q14.2 02q14.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481050 ENSG00000264833 uc061nhx.1 NG_045133 +HGNC:46485 RN7SL469P RNA, 7SL, cytoplasmic 469, pseudogene pseudogene pseudogene Approved 15q13.2 15q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106480512 ENSG00000277637 uc021shd.2 NG_045637 +HGNC:46486 RN7SL470P RNA, 7SL, cytoplasmic 470, pseudogene pseudogene pseudogene Approved 2p13.3 02p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479394 ENSG00000263669 uc061khc.1 NG_045028 +HGNC:46487 RN7SL471P RNA, 7SL, cytoplasmic 471, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 RN7SL257P RNA, 7SL, cytoplasmic 257, pseudogene RNAs, 7SL, cytoplasmic 850 2013-04-02 2016-04-01 106481051 ENSG00000263426 uc063mmi.1 NG_044132 +HGNC:46488 RN7SL472P RNA, 7SL, cytoplasmic 472, pseudogene pseudogene pseudogene Approved 14q32.31 14q32.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479395 ENSG00000240457 uc059fkg.1 NG_043192 +HGNC:46489 RN7SL473P RNA, 7SL, cytoplasmic 473, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479396 ENSG00000277452 uc057kpc.1 NG_045360 +HGNC:46490 RN7SL474P RNA, 7SL, cytoplasmic 474, pseudogene pseudogene pseudogene Approved 8p22 08p22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481052 ENSG00000264092 uc064kmg.1 NG_044139 +HGNC:46491 RN7SL475P RNA, 7SL, cytoplasmic 475, pseudogene pseudogene pseudogene Approved 1p32.1 01p32.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481845 ENSG00000265535 uc057hba.1 NG_044338 +HGNC:46492 RN7SL476P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46493 RN7SL477P RNA, 7SL, cytoplasmic 477, pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479397 ENSG00000239367 uc060rdl.1 NG_045364 +HGNC:46494 RN7SL478P RNA, 7SL, cytoplasmic 478, pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481053 ENSG00000277946 uc064fqk.1 NG_045137 +HGNC:46495 RN7SL479P RNA, 7SL, cytoplasmic 479, pseudogene pseudogene pseudogene Approved 1p34.1 01p34.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479398 ENSG00000239560 uc057fte.1 NG_043217 +HGNC:46496 RN7SL480P RNA, 7SL, cytoplasmic 480, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481757 ENSG00000266187 uc057kna.1 NG_043669 +HGNC:46497 RN7SL481P RNA, 7SL, cytoplasmic 481, pseudogene pseudogene pseudogene Approved 7q34 07q34 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481054 ENSG00000240322 uc064ivj.1 NG_045734 +HGNC:46498 RN7SL482P RNA, 7SL, cytoplasmic 482, pseudogene pseudogene pseudogene Approved 3p14.1 03p14.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480513 ENSG00000241587 uc062lhw.1 NG_045640 +HGNC:46499 RN7SL483P RNA, 7SL, cytoplasmic 483, pseudogene pseudogene pseudogene Approved 12q22 12q22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479399 ENSG00000244091 uc058rve.1 NG_043228 +HGNC:46500 RN7SL484P RNA, 7SL, cytoplasmic 484, pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479400 ENSG00000241588 uc059nvb.1 NG_045371 +HGNC:46501 RN7SL485P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46502 RN7SL486P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46503 RN7SL487P RNA, 7SL, cytoplasmic 487, pseudogene pseudogene pseudogene Approved 15q15.3 15q15.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481055 ENSG00000243871 uc059ijg.1 NG_044159 +HGNC:46504 RN7SL488P RNA, 7SL, cytoplasmic 488, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479401 ENSG00000264271 uc057hfb.1 NG_043248 +HGNC:46505 RN7SL489P RNA, 7SL, cytoplasmic 489, pseudogene pseudogene pseudogene Approved 15q24.2 15q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481056 ENSG00000277295 uc059lpu.1 NG_045742 +HGNC:46506 RN7SL490P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46507 RN7SL491P RNA, 7SL, cytoplasmic 491, pseudogene pseudogene pseudogene Approved 19q13.12 19q13.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480514 ENSG00000264400 uc060xct.1 NG_045111 +HGNC:46508 RN7SL492P RNA, 7SL, cytoplasmic 492, pseudogene pseudogene pseudogene Approved 4q12 04q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479402 ENSG00000240545 uc062wvl.1 NG_043258 +HGNC:46509 RN7SL493P RNA, 7SL, cytoplasmic 493, pseudogene pseudogene pseudogene Approved 16p13.2 16p13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479403 ENSG00000266439 uc059qru.1 NG_043268 +HGNC:46510 RN7SL494P RNA, 7SL, cytoplasmic 494, pseudogene pseudogene pseudogene Approved 15q21.2 15q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481057 ENSG00000241175 uc021skv.2 NG_045745 +HGNC:46511 RN7SL495P RNA, 7SL, cytoplasmic 495, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479404 ENSG00000277515 uc059grf.1 NG_043277 +HGNC:46512 RN7SL496P RNA, 7SL, cytoplasmic 496, pseudogene pseudogene pseudogene Approved 7p14.1 07p14.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481058 ENSG00000242855 uc064czz.1 NG_045140 +HGNC:46513 RN7SL497P RNA, 7SL, cytoplasmic 497, pseudogene pseudogene pseudogene Approved 15q15.1 15q15.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481846 ENSG00000240847 uc059hxc.1 NG_045808 +HGNC:46514 RN7SL498P RNA, 7SL, cytoplasmic 498, pseudogene pseudogene pseudogene Approved 20p12.3 20p12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479405 ENSG00000263755 uc061vgz.1 NG_043287 +HGNC:46515 RN7SL499P RNA, 7SL, cytoplasmic 499, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481059 ENSG00000239202 uc061tmz.1 NG_045141 +HGNC:46516 RN7SL500P RNA, 7SL, cytoplasmic 500, pseudogene pseudogene pseudogene Approved 22q13.33 22q13.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479406 ENSG00000242463 uc062flt.1 NG_045387 +HGNC:46517 RN7SL501P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46518 RN7SL502P RNA, 7SL, cytoplasmic 502, pseudogene pseudogene pseudogene Approved 6p21.31 06p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479407 ENSG00000240733 uc063oeg.1 NG_043301 +HGNC:46519 RN7SL503P RNA, 7SL, cytoplasmic 503, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481060 ENSG00000240374 uc057ers.1 NG_044197 +HGNC:46520 RN7SL504P RNA, 7SL, cytoplasmic 504, pseudogene pseudogene pseudogene Approved 3p21.2 03p21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480515 ENSG00000241789 uc062khz.1 NG_043942 +HGNC:46521 RN7SL505P RNA, 7SL, cytoplasmic 505, pseudogene pseudogene pseudogene Approved 7p14.3 07p14.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481758 ENSG00000241420 uc064crs.1 NG_045537 +HGNC:46522 RN7SL506P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46523 RN7SL507P RNA, 7SL, cytoplasmic 507, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479408 ENSG00000239702 uc060fym.1 NG_043310 +HGNC:46524 RN7SL508P RNA, 7SL, cytoplasmic 508, pseudogene pseudogene pseudogene Approved 12q24.23 12q24.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481061 ENSG00000244112 uc058twr.1 NG_045761 +HGNC:46525 RN7SL509P RNA, 7SL, cytoplasmic 509, pseudogene pseudogene pseudogene Approved 6q16.1 06q16.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479409 ENSG00000263479 uc063qec.1 NG_045211 +HGNC:46526 RN7SL510P RNA, 7SL, cytoplasmic 510, pseudogene pseudogene pseudogene Approved 15q24.2 15q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479410 ENSG00000266308 uc059luy.1 NG_045403 +HGNC:46527 RN7SL511P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46528 RN7SL512P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46529 RN7SL513P RNA, 7SL, cytoplasmic 513, pseudogene pseudogene pseudogene Approved 19p13.11 19p13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481062 ENSG00000239821 uc060vpx.1 NG_044210 +HGNC:46530 RN7SL514P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46531 RN7SL515P RNA, 7SL, cytoplasmic 515, pseudogene pseudogene pseudogene Approved 13q14.11 13q14.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481063 ENSG00000241406 uc058wqk.1 NG_044218 +HGNC:46532 RN7SL516P RNA, 7SL, cytoplasmic 516, pseudogene pseudogene pseudogene Approved 2p23.2 02p23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479411 ENSG00000242699 uc061hun.1 NG_045039 +HGNC:46533 RN7SL517P RNA, 7SL, cytoplasmic 517, pseudogene pseudogene pseudogene Approved 3p22.1 03p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481064 ENSG00000241939 uc062itf.1 NG_045773 +HGNC:46534 RN7SL518P RNA, 7SL, cytoplasmic 518, pseudogene pseudogene pseudogene Approved 10q22.3 10q22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481847 ENSG00000265486 uc057uhi.1 NG_044358 +HGNC:46535 RN7SL519P RNA, 7SL, cytoplasmic 519, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479412 ENSG00000243075 uc058nyr.1 NG_043343 +HGNC:46536 RN7SL520P RNA, 7SL, cytoplasmic 520, pseudogene pseudogene pseudogene Approved 16q23.1 16q23.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481065 ENSG00000240199 uc059xhv.1 NG_045775 +HGNC:46537 RN7SL521P RNA, 7SL, cytoplasmic 521, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479413 ENSG00000240877 uc064izu.1 NG_045412 +HGNC:46538 RN7SL522P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46539 RN7SL523P RNA, 7SL, cytoplasmic 523, pseudogene pseudogene pseudogene Approved 14q32.2 14q32.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479414 ENSG00000243976 uc059fdd.1 NG_043359 +HGNC:46540 RN7SL524P RNA, 7SL, cytoplasmic 524, pseudogene pseudogene pseudogene Approved 10q24.33 10q24.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481066 ENSG00000266754 uc057vts.1 NG_044240 +HGNC:46541 RN7SL525P RNA, 7SL, cytoplasmic 525, pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480516 ENSG00000264910 uc061dtw.1 NG_043950 +HGNC:46542 RN7SL526P RNA, 7SL, cytoplasmic 526, pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479415 ENSG00000243642 uc061dpi.1 NG_043368 +HGNC:46544 RN7SL528P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46545 RN7SL529P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46546 RN7SL530P RNA, 7SL, cytoplasmic 530, pseudogene pseudogene pseudogene Approved 14q24.3 14q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481067 ENSG00000239910 uc059dhd.1 NG_045781 +HGNC:46547 RN7SL531P RNA, 7SL, cytoplasmic 531, pseudogene pseudogene pseudogene Approved 2p25.3 02p25.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479416 ENSG00000264071 uc061ira.1 NG_045045 +HGNC:46548 RN7SL532P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46549 RN7SL533P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46550 RN7SL534P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46551 RN7SL535P RNA, 7SL, cytoplasmic 535, pseudogene pseudogene pseudogene Approved 7q34 07q34 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479417 ENSG00000239419 uc064ivg.1 NG_045428 +HGNC:46552 RN7SL536P RNA, 7SL, cytoplasmic 536, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481068 ENSG00000278222 uc059gso.1 NG_045783 +HGNC:46553 RN7SL537P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46554 RN7SL538P RNA, 7SL, cytoplasmic 538, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480517 ENSG00000240692 uc057hky.1 NG_045654 +HGNC:46555 RN7SL539P RNA, 7SL, cytoplasmic 539, pseudogene pseudogene pseudogene Approved 15q13.3 15q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479418 ENSG00000274076 uc021sih.2 NG_045431 +HGNC:46556 RN7SL540P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46557 RN7SL541P RNA, 7SL, cytoplasmic 541, pseudogene pseudogene pseudogene Approved 5q31.1 05q31.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481069 ENSG00000240250 uc021ydq.2 NG_044267 +HGNC:46558 RN7SL542P RNA, 7SL, cytoplasmic 542, pseudogene pseudogene pseudogene Approved 7p15.3 07p15.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479419 ENSG00000243633 uc064bwc.1 NG_045433 +HGNC:46559 RN7SL543P RNA, 7SL, cytoplasmic 543, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480378 ENSG00000265918 uc059vnk.1 NG_044894 +HGNC:46560 RN7SL544P RNA, 7SL, cytoplasmic 544, pseudogene pseudogene pseudogene Approved 9p11.2 09p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481070 ENSG00000275230 uc064tju.1 NG_044275 +HGNC:46561 RN7SL545P RNA, 7SL, cytoplasmic 545, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481848 ENSG00000274568 uc059grd.1 NG_045815 +HGNC:46562 RN7SL546P RNA, 7SL, cytoplasmic 546, pseudogene pseudogene pseudogene Approved 14q32.31 14q32.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479420 ENSG00000239224 uc059fnp.1 NG_043404 +HGNC:46563 RN7SL547P RNA, 7SL, cytoplasmic 547, pseudogene pseudogene pseudogene Approved 20p12.3 20p12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479421 ENSG00000240584 uc061vhn.1 NG_043413 +HGNC:46564 RN7SL548P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46565 RN7SL549P RNA, 7SL, cytoplasmic 549, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481071 ENSG00000239825 uc064gjn.1 NG_045151 +HGNC:46566 RN7SL550P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46567 RN7SL551P RNA, 7SL, cytoplasmic 551, pseudogene pseudogene pseudogene Approved 18q22.3 18q22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479422 ENSG00000243856 uc060qbw.1 NG_043422 +HGNC:46568 RN7SL552P RNA, 7SL, cytoplasmic 552, pseudogene pseudogene pseudogene Approved 4q21.23 04q21.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481072 ENSG00000239466 uc062xxf.1 NG_045793 +HGNC:46569 RN7SL553P RNA, 7SL, cytoplasmic 553, pseudogene pseudogene pseudogene Approved 3p26.1 03p26.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480518 ENSG00000241227 uc021wsn.2 NG_043964 +HGNC:46570 RN7SL554P RNA, 7SL, cytoplasmic 554, pseudogene pseudogene pseudogene Approved 6p25.1 06p25.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479423 ENSG00000240936 uc063lqk.1 NG_043430 +HGNC:46571 RN7SL555P RNA, 7SL, cytoplasmic 555, pseudogene pseudogene pseudogene Approved 20p13 20p13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479424 ENSG00000263905 uc061vcx.1 NG_045450 +HGNC:46572 RN7SL556P RNA, 7SL, cytoplasmic 556, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481073 ENSG00000277265 uc064bfe.1 NG_045153 +HGNC:46573 RN7SL557P RNA, 7SL, cytoplasmic 557, pseudogene pseudogene pseudogene Approved 16p12.1 16p12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479425 ENSG00000266166 uc059sho.1 NG_043445 +HGNC:46574 RN7SL558P RNA, 7SL, cytoplasmic 558, pseudogene pseudogene pseudogene Approved 4p14 04p14 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481074 ENSG00000243260 uc062wbx.1 NG_045799 +HGNC:46575 RN7SL559P RNA, 7SL, cytoplasmic 559, pseudogene pseudogene pseudogene Approved 1p35.3 01p35.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481849 ENSG00000240750 uc057dxq.1 NG_045820 +HGNC:46576 RN7SL560P RNA, 7SL, cytoplasmic 560, pseudogene pseudogene pseudogene Approved 9q34.11 09q34.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479426 ENSG00000264438 uc064wgl.1 NG_045454 +HGNC:46577 RN7SL561P RNA, 7SL, cytoplasmic 561, pseudogene pseudogene pseudogene Approved 20p13 20p13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481075 ENSG00000242348 uc061uzu.1 NG_044320 +HGNC:46578 RN7SL562P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46579 RN7SL563P RNA, 7SL, cytoplasmic 563, pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479427 ENSG00000239211 uc064pdz.1 NG_043460 +HGNC:46580 RN7SL564P RNA, 7SL, cytoplasmic 564, pseudogene pseudogene pseudogene Approved 6q22.31 06q22.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479428 ENSG00000240606 uc063rbe.1 NG_043468 +HGNC:46581 RN7SL565P RNA, 7SL, cytoplasmic 565, pseudogene pseudogene pseudogene Approved 9p11.2 09p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481076 ENSG00000276562 uc064thd.1 NG_044329 +HGNC:46582 RN7SL566P RNA, 7SL, cytoplasmic 566, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481850 ENSG00000241983 uc060yjv.1 NG_045822 +HGNC:46583 RN7SL567P RNA, 7SL, cytoplasmic 567, pseudogene pseudogene pseudogene Approved 3p22.1 03p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481976 ENSG00000240203 uc062iqy.1 NG_043378 +HGNC:46584 RN7SL568P RNA, 7SL, cytoplasmic 568, pseudogene pseudogene pseudogene Approved 15q21.3 15q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479429 ENSG00000239703 uc059jnf.1 NG_045463 +HGNC:46585 RN7SL569P RNA, 7SL, cytoplasmic 569, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481077 ENSG00000239468 uc064izl.1 NG_045156 +HGNC:46586 RN7SL570P RNA, 7SL, cytoplasmic 570, pseudogene pseudogene pseudogene Approved 9q21.12 09q21.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479430 ENSG00000241174 uc064tpz.1 NG_043480 +HGNC:46587 RN7SL571P RNA, 7SL, cytoplasmic 571, pseudogene pseudogene pseudogene Approved 13q22.2 13q22.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479431 ENSG00000243274 uc058xny.1 NG_043488 +HGNC:46588 RN7SL572P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46589 RN7SL573P RNA, 7SL, cytoplasmic 573, pseudogene pseudogene pseudogene Approved 17q25.1 17q25.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481078 ENSG00000239607 uc021ucv.2 NG_044347 +HGNC:46590 RN7SL574P RNA, 7SL, cytoplasmic 574, pseudogene pseudogene pseudogene Approved 1p36.32 01p36.32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481079 ENSG00000266075 uc057bqu.1 NG_044355 +HGNC:46591 RN7SL575P RNA, 7SL, cytoplasmic 575, pseudogene pseudogene pseudogene Approved 2q11.1 02q11.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479432 ENSG00000277591 uc061lsm.1 NG_045064 +HGNC:46592 RN7SL576P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46593 RN7SL577P RNA, 7SL, cytoplasmic 577, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481080 ENSG00000265942 uc021skr.2 NG_045813 +HGNC:46594 RN7SL578P RNA, 7SL, cytoplasmic 578, pseudogene pseudogene pseudogene Approved Xp22.33 Xp22.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479433 ENSG00000239228 uc064xvt.1 NG_043503 +HGNC:46596 RN7SL580P RNA, 7SL, cytoplasmic 580, pseudogene pseudogene pseudogene Approved 6p12.2 06p12.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481081 ENSG00000240641 uc063ozx.1 NG_044369 +HGNC:46597 RN7SL581P RNA, 7SL, cytoplasmic 581, pseudogene pseudogene pseudogene Approved Xq13.1 Xq13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479434 ENSG00000242657 uc064zse.1 NG_043512 +HGNC:46598 RN7SL582P RNA, 7SL, cytoplasmic 582, pseudogene pseudogene pseudogene Approved 3q13.31 03q13.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479435 ENSG00000241156 uc021xcu.1 NG_043522 +HGNC:46599 RN7SL583P RNA, 7SL, cytoplasmic 583, pseudogene pseudogene pseudogene Approved 1p22.2 01p22.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481082 ENSG00000239504 uc021opm.2 NG_044378 +HGNC:46600 RN7SL584P RNA, 7SL, cytoplasmic 584, pseudogene pseudogene pseudogene Approved 15q11.1 15q11.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480519 ENSG00000239471 uc059gou.1 NG_043970 +HGNC:46601 RN7SL585P RNA, 7SL, cytoplasmic 585, pseudogene pseudogene pseudogene Approved 13q32.1 13q32.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479436 ENSG00000274168 uc058xtr.1 NG_043529 +HGNC:46602 RN7SL586P RNA, 7SL, cytoplasmic 586, pseudogene pseudogene pseudogene Approved 14q24.2 14q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481083 ENSG00000241487 uc059dao.1 NG_044388 +HGNC:46603 RN7SL587P RNA, 7SL, cytoplasmic 587, pseudogene pseudogene pseudogene Approved 14q24.3 14q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479437 ENSG00000240233 uc059dve.1 NG_045486 +HGNC:46604 RN7SL588P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46605 RN7SL589P RNA, 7SL, cytoplasmic 589, pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479438 ENSG00000239247 uc062upf.1 NG_045488 +HGNC:46606 RN7SL590P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46607 RN7SL591P RNA, 7SL, cytoplasmic 591, pseudogene pseudogene pseudogene Approved 10q21.2 10q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481084 ENSG00000240940 uc057tne.1 NG_044397 +HGNC:46608 RN7SL592P RNA, 7SL, cytoplasmic 592, pseudogene pseudogene pseudogene Approved 9p24.2 09p24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481851 ENSG00000264615 uc064rwo.1 NG_044390 +HGNC:46609 RN7SL593P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46610 RN7SL594P RNA, 7SL, cytoplasmic 594, pseudogene pseudogene pseudogene Approved 20p11.1 20p11.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479439 ENSG00000242236 uc061vyl.1 NG_043554 +HGNC:46611 RN7SL595P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46612 RN7SL596P RNA, 7SL, cytoplasmic 596, pseudogene pseudogene pseudogene Approved 11q13.1 11q13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481085 ENSG00000264519 uc058cru.1 NG_044405 +HGNC:46613 RN7SL597P RNA, 7SL, cytoplasmic 597, pseudogene pseudogene pseudogene Approved 13q14.11 13q14.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479440 ENSG00000244264 uc058wpj.1 NG_043564 +HGNC:46614 RN7SL598P RNA, 7SL, cytoplasmic 598, pseudogene pseudogene pseudogene Approved 14q23.1 14q23.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481759 ENSG00000243700 uc059bxs.1 NG_043682 +HGNC:46615 RN7SL599P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46616 RN7SL600P RNA, 7SL, cytoplasmic 600, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481086 ENSG00000274963 uc057kpd.1 NG_045835 +HGNC:46617 RN7SL601P RNA, 7SL, cytoplasmic 601, pseudogene pseudogene pseudogene Approved 17p12 17p12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480520 ENSG00000243346 uc060bhj.1 NG_043977 +HGNC:46618 RN7SL602P RNA, 7SL, cytoplasmic 602, pseudogene pseudogene pseudogene Approved 2p22.3 02p22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479441 ENSG00000264352 uc061ibd.1 NG_043573 +HGNC:46619 RN7SL603P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46620 RN7SL604P RNA, 7SL, cytoplasmic 604, pseudogene pseudogene pseudogene Approved 2p13.3 02p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479442 ENSG00000244236 uc061jzv.1 NG_045068 +HGNC:46621 RN7SL605P RNA, 7SL, cytoplasmic 605, pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481087 ENSG00000265566 uc058bmn.1 NG_044421 +HGNC:46622 RN7SL606P RNA, 7SL, cytoplasmic 606, pseudogene pseudogene pseudogene Approved 17q23.2 17q23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479443 ENSG00000239932 uc060iih.1 NG_045499 +HGNC:46623 RN7SL607P RNA, 7SL, cytoplasmic 607, pseudogene pseudogene pseudogene Approved 20p11.23 20p11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106481088 ENSG00000278525 uc061vth.1 NG_044430 +HGNC:46624 RN7SL608P RNA, 7SL, cytoplasmic 608, pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480521 ENSG00000239884 uc059zod.1 NG_045668 +HGNC:46625 RN7SL609P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46626 RN7SL610P RNA, 7SL, cytoplasmic 610, pseudogene pseudogene pseudogene Approved 2p23.3 02p23.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479444 ENSG00000243847 uc061hbf.1 NG_045069 +HGNC:46627 RN7SL611P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46628 RN7SL612P RNA, 7SL, cytoplasmic 612, pseudogene pseudogene pseudogene Approved 1q23.1 01q23.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479445 ENSG00000266160 uc057mec.1 NG_045506 +HGNC:46629 RN7SL613P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-11 +HGNC:46630 RN7SL614P RNA, 7SL, cytoplasmic 614, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481089 ENSG00000243267 uc057cdf.1 NG_045842 +HGNC:46631 RN7SL615P RNA, 7SL, cytoplasmic 615, pseudogene pseudogene pseudogene Approved 20q12 20q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479446 ENSG00000263989 uc061xbk.1 NG_045508 +HGNC:46632 RN7SL616P RNA, 7SL, cytoplasmic 616, pseudogene pseudogene pseudogene Approved 5q13.2 05q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481090 ENSG00000266477 uc063egz.1 NG_044443 +HGNC:46633 RN7SL617P RNA, 7SL, cytoplasmic 617, pseudogene pseudogene pseudogene Approved 6q21 06q21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481852 ENSG00000241162 uc063qpj.1 NG_045828 +HGNC:46634 RN7SL618P RNA, 7SL, cytoplasmic 618, pseudogene pseudogene pseudogene Approved 13q14.3 13q14.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479447 ENSG00000241613 uc021rka.2 NG_045511 +HGNC:46635 RN7SL619P RNA, 7SL, cytoplasmic 619, pseudogene pseudogene pseudogene Approved 19p13.13 19p13.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481091 ENSG00000266770 uc060ujs.1 NG_044453 +HGNC:46636 RN7SL620P RNA, 7SL, cytoplasmic 620, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479448 ENSG00000276088 uc060bud.1 NG_045514 +HGNC:46637 RN7SL621P RNA, 7SL, cytoplasmic 621, pseudogene pseudogene pseudogene Approved 8p12 08p12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479449 ENSG00000240189 uc064lvw.1 NG_043634 +HGNC:46638 RN7SL622P RNA, 7SL, cytoplasmic 622, pseudogene pseudogene pseudogene Approved 17q24.2 17q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481092 ENSG00000265052 uc060jct.1 NG_045854 +HGNC:46639 RN7SL623P RNA, 7SL, cytoplasmic 623, pseudogene pseudogene pseudogene Approved 5q35.1 05q35.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480522 ENSG00000244501 uc063jpl.1 NG_045674 +HGNC:46640 RN7SL624P RNA, 7SL, cytoplasmic 624, pseudogene pseudogene pseudogene Approved 17p13.3 17p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480379 ENSG00000265777 uc059zlu.1 NG_044901 +HGNC:46641 RN7SL625P RNA, 7SL, cytoplasmic 625, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-11 106479450 ENSG00000274656 uc064edl.1 NG_043640 +HGNC:46642 RN7SL626P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46643 RN7SL627P RNA, 7SL, cytoplasmic 627, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481093 ENSG00000274747 uc060cgt.1 NG_044464 +HGNC:46644 RN7SL628P RNA, 7SL, cytoplasmic 628, pseudogene pseudogene pseudogene Approved 15q13.2 15q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479451 ENSG00000277467 uc059hbp.1 NG_045525 +HGNC:46645 RN7SL629P RNA, 7SL, cytoplasmic 629, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479452 ENSG00000241243 uc063fdr.1 NG_043657 +HGNC:46646 RN7SL630P RNA, 7SL, cytoplasmic 630, pseudogene pseudogene pseudogene Approved 12q22 12q22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481094 ENSG00000264978 uc058rtz.1 NG_045861 +HGNC:46648 RN7SL632P RNA, 7SL, cytoplasmic 632, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481095 ENSG00000241524 uc061jll.1 NG_045169 +HGNC:46649 RN7SL633P RNA, 7SL, cytoplasmic 633, pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479453 ENSG00000240186 uc062dgs.1 NG_045531 +HGNC:46650 RN7SL634P RNA, 7SL, cytoplasmic 634, pseudogene pseudogene pseudogene Approved 14q32.33 14q32.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481096 ENSG00000242894 uc059fvk.1 NG_045868 +HGNC:46651 RN7SL635P RNA, 7SL, cytoplasmic 635, pseudogene pseudogene pseudogene Approved 2p14 02p14 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479454 ENSG00000243029 uc061jvm.1 NG_043671 +HGNC:46652 RN7SL636P RNA, 7SL, cytoplasmic 636, pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481097 ENSG00000244376 uc061xsc.1 NG_044494 +HGNC:46653 RN7SL637P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46654 RN7SL638P RNA, 7SL, cytoplasmic 638, pseudogene pseudogene pseudogene Approved 20p11.23 20p11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479455 ENSG00000243702 uc061vqy.1 NG_045539 +HGNC:46655 RN7SL639P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46656 RN7SL640P RNA, 7SL, cytoplasmic 640, pseudogene pseudogene pseudogene Approved 9p13.1 09p13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479456 ENSG00000278825 uc064ter.1 NG_043685 +HGNC:46657 RN7SL641P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46658 RN7SL642P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46659 RN7SL643P RNA, 7SL, cytoplasmic 643, pseudogene pseudogene pseudogene Approved 6q14.3 06q14.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481098 ENSG00000243124 uc063pyg.1 NG_044504 +HGNC:46660 RN7SL644P RNA, 7SL, cytoplasmic 644, pseudogene pseudogene pseudogene Approved 10q23.33 10q23.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481853 ENSG00000264313 uc057uwh.1 NG_044406 +HGNC:46661 RN7SL645P RNA, 7SL, cytoplasmic 645, pseudogene pseudogene pseudogene Approved 16q21 16q21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479457 ENSG00000240863 uc021tjg.2 NG_043694 +HGNC:46662 RN7SL646P RNA, 7SL, cytoplasmic 646, pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481099 ENSG00000242341 uc063kks.1 NG_044514 +HGNC:46663 RN7SL647P RNA, 7SL, cytoplasmic 647, pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479458 ENSG00000243957 uc062lqc.1 NG_043699 +HGNC:46664 RN7SL648P RNA, 7SL, cytoplasmic 648, pseudogene pseudogene pseudogene Approved Xq13.2 Xq13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479459 ENSG00000265727 uc064zzk.1 NG_045548 +HGNC:46665 RN7SL649P RNA, 7SL, cytoplasmic 649, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481100 ENSG00000243539 uc057cjd.1 NG_044522 +HGNC:46666 RN7SL650P RNA, 7SL, cytoplasmic 650, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106480523 ENSG00000274475 uc058zcb.1 NG_045678 +HGNC:46667 RN7SL651P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46668 RN7SL652P RNA, 7SL, cytoplasmic 652, pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479460 ENSG00000265559 uc058bfx.1 NG_043714 +HGNC:46669 RN7SL653P RNA, 7SL, cytoplasmic 653, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481101 ENSG00000239794 uc021ops.2 NG_045880 +HGNC:46670 RN7SL654P RNA, 7SL, cytoplasmic 654, pseudogene pseudogene pseudogene Approved 1q25.3 01q25.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479461 ENSG00000244568 uc057nwu.1 NG_043722 +HGNC:46671 RN7SL655P RNA, 7SL, cytoplasmic 655, pseudogene pseudogene pseudogene Approved 5q33.2 05q33.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481102 ENSG00000241963 uc063iyu.1 NG_045884 +HGNC:46672 RN7SL656P RNA, 7SL, cytoplasmic 656, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481760 ENSG00000265411 uc060gks.1 NG_045542 +HGNC:46673 RN7SL657P RNA, 7SL, cytoplasmic 657, pseudogene pseudogene pseudogene Approved 1p36.33 01p36.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 107074708 ENSG00000264293 uc057bfb.1 NG_046366 +HGNC:46674 RN7SL658P RNA, 7SL, cytoplasmic 658, pseudogene pseudogene pseudogene Approved Xp22.2 Xp22.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480524 ENSG00000239333 uc064ydu.1 NG_044006 +HGNC:46675 RN7SL659P RNA, 7SL, cytoplasmic 659, pseudogene pseudogene pseudogene Approved 9q31.2 09q31.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479462 ENSG00000244104 uc064uyw.1 NG_043731 +HGNC:46676 RN7SL660P RNA, 7SL, cytoplasmic 660, pseudogene pseudogene pseudogene Approved 14q12 14q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479463 ENSG00000278746 uc059aqd.1 NG_045555 +HGNC:46677 RN7SL661P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46678 RN7SL662P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46679 RN7SL663P RNA, 7SL, cytoplasmic 663, pseudogene pseudogene pseudogene Approved 19q13.13 19q13.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481103 ENSG00000275132 uc060xyr.1 NG_045887 +HGNC:46680 RN7SL664P RNA, 7SL, cytoplasmic 664, pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479464 ENSG00000265078 uc062jft.1 NG_043744 +HGNC:46681 RN7SL665P RNA, 7SL, cytoplasmic 665, pseudogene pseudogene pseudogene Approved 9q34.11 09q34.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481104 ENSG00000264169 uc064wne.1 NG_045892 +HGNC:46682 RN7SL666P RNA, 7SL, cytoplasmic 666, pseudogene pseudogene pseudogene Approved 20q13.11 20q13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481854 ENSG00000240639 uc061xco.1 NG_044414 +HGNC:46683 RN7SL667P RNA, 7SL, cytoplasmic 667, pseudogene pseudogene pseudogene Approved Xq28 Xq28 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479465 ENSG00000265170 uc065bst.1 NG_043753 +HGNC:46684 RN7SL668P RNA, 7SL, cytoplasmic 668, pseudogene pseudogene pseudogene Approved 1q42.3 01q42.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479466 ENSG00000239690 uc057qmo.1 NG_043760 +HGNC:46685 RN7SL669P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46686 RN7SL670P RNA, 7SL, cytoplasmic 670, pseudogene pseudogene pseudogene Approved 2q33.2 02q33.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481105 ENSG00000264041 uc061rpr.1 NG_045896 +HGNC:46687 RN7SL671P RNA, 7SL, cytoplasmic 671, pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479467 ENSG00000240455 uc062unb.1 NG_043765 +HGNC:46688 RN7SL672P RNA, 7SL, cytoplasmic 672, pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481106 ENSG00000239742 uc061xsd.1 NG_044566 +HGNC:46689 RN7SL673P RNA, 7SL, cytoplasmic 673, pseudogene pseudogene pseudogene Approved 15q13.2 15q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106480525 ENSG00000273818 uc021sgv.2 NG_045684 +HGNC:46690 RN7SL674P RNA, 7SL, cytoplasmic 674, pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479468 ENSG00000239899 uc021vdz.2 NG_045573 +HGNC:46691 RN7SL675P RNA, 7SL, cytoplasmic 675, pseudogene pseudogene pseudogene Approved 8q13.3 08q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481107 ENSG00000239580 uc064noi.1 NG_044576 +HGNC:46692 RN7SL676P RNA, 7SL, cytoplasmic 676, pseudogene pseudogene pseudogene Approved 12p13.1 12p13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479469 ENSG00000265119 uc058pch.1 NG_043783 +HGNC:46693 RN7SL677P RNA, 7SL, cytoplasmic 677, pseudogene pseudogene pseudogene Approved 15q26.2 15q26.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479470 ENSG00000242863 uc021sxg.2 NG_043791 +HGNC:46694 RN7SL678P RNA, 7SL, cytoplasmic 678, pseudogene pseudogene pseudogene Approved 21q22.13 21q22.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481108 ENSG00000263969 uc062aai.1 NG_045902 +HGNC:46695 RN7SL679P RNA, 7SL, cytoplasmic 679, pseudogene pseudogene pseudogene Approved 1p36.11 01p36.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481855 ENSG00000243905 uc057dsy.1 NG_044422 +HGNC:46696 RN7SL680P RNA, 7SL, cytoplasmic 680, pseudogene pseudogene pseudogene Approved 20q12 20q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106480380 ENSG00000275337 uc061wzq.1 NG_044911 +HGNC:46697 RN7SL681P RNA, 7SL, cytoplasmic 681, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479471 ENSG00000240966 uc062yar.1 NG_045582 +HGNC:46698 RN7SL682P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46699 RN7SL683P RNA, 7SL, cytoplasmic 683, pseudogene pseudogene pseudogene Approved 14q24.2 14q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481109 ENSG00000242330 uc021rvt.2 NG_044595 +HGNC:46700 RN7SL684P RNA, 7SL, cytoplasmic 684, pseudogene pseudogene pseudogene Approved 5q35.2 05q35.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479472 ENSG00000243959 uc063jzj.1 NG_043807 +HGNC:46701 RN7SL685P RNA, 7SL, cytoplasmic 685, pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479473 ENSG00000242315 uc064pdd.1 NG_043817 +HGNC:46702 RN7SL686P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46703 RN7SL687P RNA, 7SL, cytoplasmic 687, pseudogene pseudogene pseudogene Approved Xq28 Xq28 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481110 ENSG00000244335 uc065buf.1 NG_045907 +HGNC:46704 RN7SL688P RNA, 7SL, cytoplasmic 688, pseudogene pseudogene pseudogene Approved 11q23.3 11q23.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479474 ENSG00000239726 uc058ibu.1 NG_043824 +HGNC:46705 RN7SL689P RNA, 7SL, cytoplasmic 689, pseudogene pseudogene pseudogene Approved 5q23.2 05q23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481111 ENSG00000263432 uc063gle.1 NG_044613 +HGNC:46706 RN7SL690P RNA, 7SL, cytoplasmic 690, pseudogene pseudogene pseudogene Approved 20p11.23 20p11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479475 ENSG00000264879 uc061vtb.1 NG_045592 +HGNC:46707 RN7SL691P RNA, 7SL, cytoplasmic 691, pseudogene pseudogene pseudogene Approved 4p13 04p13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481112 ENSG00000239464 uc062whl.1 NG_044621 +HGNC:46708 RN7SL692P RNA, 7SL, cytoplasmic 692, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479476 ENSG00000239710 uc057iig.1 NG_043840 +HGNC:46709 RN7SL693P RNA, 7SL, cytoplasmic 693, pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479477 ENSG00000265272 uc061dtl.1 NG_043847 +HGNC:46711 RN7SL695P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46712 RN7SL696P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46713 RN7SL697P RNA, 7SL, cytoplasmic 697, pseudogene pseudogene pseudogene Approved Xq28 Xq28 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480526 ENSG00000264484 uc065cgg.1 NG_044023 +HGNC:46714 RN7SL698P RNA, 7SL, cytoplasmic 698, pseudogene pseudogene pseudogene Approved 3q21.3 03q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481113 ENSG00000244232 uc062noo.1 NG_045916 +HGNC:46715 RN7SL699P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46716 RN7SL700P RNA, 7SL, cytoplasmic 700, pseudogene pseudogene pseudogene Approved 13q14.2 13q14.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479478 ENSG00000244521 uc021rjk.2 NG_043853 +HGNC:46717 RN7SL701P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46718 RN7SL702P RNA, 7SL, cytoplasmic 702, pseudogene pseudogene pseudogene Approved Yq11.21 Yq11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481114 ENSG00000243980 uc065crm.1 NG_044637 +HGNC:46719 RN7SL703P RNA, 7SL, cytoplasmic 703, pseudogene pseudogene pseudogene Approved 3q26.33 03q26.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479479 ENSG00000266317 uc062qku.1 NG_043857 +HGNC:46720 RN7SL704P RNA, 7SL, cytoplasmic 704, pseudogene pseudogene pseudogene Approved 22q13.1 22q13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481115 ENSG00000241693 uc062eev.1 NG_044641 +HGNC:46721 RN7SL705P RNA, 7SL, cytoplasmic 705, pseudogene pseudogene pseudogene Approved 18q21.33 18q21.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481856 ENSG00000243549 uc060puj.1 NG_044432 +HGNC:46722 RN7SL706P RNA, 7SL, cytoplasmic 706, pseudogene pseudogene pseudogene Approved 14q24.1 14q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479480 ENSG00000244677 uc059csq.1 NG_043863 +HGNC:46723 RN7SL707P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46724 RN7SL708P RNA, 7SL, cytoplasmic 708, pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479481 ENSG00000265675 uc061azd.1 NG_043870 +HGNC:46725 RN7SL709P RNA, 7SL, cytoplasmic 709, pseudogene pseudogene pseudogene Approved 8p11.23 08p11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481116 ENSG00000241032 uc064lyn.1 NG_044650 +HGNC:46726 RN7SL710P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46727 RN7SL711P RNA, 7SL, cytoplasmic 711, pseudogene pseudogene pseudogene Approved 5q23.2 05q23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479482 ENSG00000276047 uc063glh.1 NG_043878 +HGNC:46728 RN7SL712P RNA, 7SL, cytoplasmic 712, pseudogene pseudogene pseudogene Approved Xq23 Xq23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481117 ENSG00000266828 uc065aux.1 NG_045933 +HGNC:46729 RN7SL713P RNA, 7SL, cytoplasmic 713, pseudogene pseudogene pseudogene Approved 1p32.1 01p32.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480381 ENSG00000264128 uc057gyy.1 NG_044917 +HGNC:46730 RN7SL714P RNA, 7SL, cytoplasmic 714, pseudogene pseudogene pseudogene Approved 14q32.2 14q32.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480527 ENSG00000241757 uc059eyx.1 NG_044032 +HGNC:46731 RN7SL715P RNA, 7SL, cytoplasmic 715, pseudogene pseudogene pseudogene Approved 3q25.31 03q25.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479483 ENSG00000272096 uc062pfg.1 NG_043885 +HGNC:46732 RN7SL716P RNA, 7SL, cytoplasmic 716, pseudogene pseudogene pseudogene Approved 17q22 17q22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479484 ENSG00000263558 uc060iav.1 NG_043895 +HGNC:46733 RN7SL717P RNA, 7SL, cytoplasmic 717, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481118 ENSG00000240302 uc061rdi.1 NG_045188 +HGNC:46734 RN7SL718P RNA, 7SL, cytoplasmic 718, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479485 ENSG00000264423 uc060yyu.1 NG_043903 +HGNC:46735 RN7SL719P RNA, 7SL, cytoplasmic 719, pseudogene pseudogene pseudogene Approved 15q13.1 15q13.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481119 ENSG00000274632 uc059gzn.1 NG_045942 +HGNC:46736 RN7SL720P RNA, 7SL, cytoplasmic 720, pseudogene pseudogene pseudogene Approved 9p22.2 09p22.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480528 ENSG00000241152 uc064sgq.1 NG_044039 +HGNC:46737 RN7SL721P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46738 RN7SL722P RNA, 7SL, cytoplasmic 722, pseudogene pseudogene pseudogene Approved 9p11.2 09p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479486 ENSG00000273940 uc064tje.1 NG_043909 +HGNC:46739 RN7SL723P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46740 RN7SL724P RNA, 7SL, cytoplasmic 724, pseudogene pseudogene pseudogene Approved 3q23 03q23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479487 ENSG00000244692 uc021xer.2 NG_045630 +HGNC:46741 RN7SL725P RNA, 7SL, cytoplasmic 725, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481120 ENSG00000278242 uc065cwi.1 NG_045948 +HGNC:46742 RN7SL726P RNA, 7SL, cytoplasmic 726, pseudogene pseudogene pseudogene Approved 9q21.12 09q21.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479488 ENSG00000272232 uc064trj.1 NG_045635 +HGNC:46743 RN7SL727P RNA, 7SL, cytoplasmic 727, pseudogene pseudogene pseudogene Approved Xq27.1 Xq27.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481121 ENSG00000241248 uc065bjw.1 NG_044686 +HGNC:46744 RN7SL728P RNA, 7SL, cytoplasmic 728, pseudogene pseudogene pseudogene Approved 4q24 04q24 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481857 ENSG00000241144 uc062yod.1 NG_044440 +HGNC:46745 RN7SL729P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46746 RN7SL730P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46747 RN7SL731P RNA, 7SL, cytoplasmic 731, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 107048981 ENSG00000264501 uc057cch.1 NG_046345 +HGNC:46748 RN7SL732P RNA, 7SL, cytoplasmic 732, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481122 ENSG00000264618 uc064yoo.1 NG_044694 +HGNC:46749 RN7SL733P RNA, 7SL, cytoplasmic 733, pseudogene pseudogene pseudogene Approved 10q23.2 10q23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479489 ENSG00000273946 uc057urm.1 NG_043926 +HGNC:46750 RN7SL734P RNA, 7SL, cytoplasmic 734, pseudogene pseudogene pseudogene Approved 12q21.2 12q21.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479490 ENSG00000243420 uc058rco.1 NG_043932 +HGNC:46751 RN7SL735P RNA, 7SL, cytoplasmic 735, pseudogene pseudogene pseudogene Approved 17q24.2 17q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480529 ENSG00000244044 uc060jac.1 NG_045693 +HGNC:46752 RN7SL736P RNA, 7SL, cytoplasmic 736, pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 107080652 ENSG00000275803 uc059nem.1 NG_046565 +HGNC:46753 RN7SL737P RNA, 7SL, cytoplasmic 737, pseudogene pseudogene pseudogene Approved 12q22 12q22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481123 ENSG00000243015 uc058rth.1 NG_044704 +HGNC:46754 RN7SL738P RNA, 7SL, cytoplasmic 738, pseudogene pseudogene pseudogene Approved 3q29 03q29 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480695 ENSG00000243339 uc062sbm.1 NG_043370 +HGNC:46755 RN7SL739P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46756 RN7SL740P RNA, 7SL, cytoplasmic 740, pseudogene pseudogene pseudogene Approved 21q22.11 21q22.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479491 ENSG00000244294 uc061zuk.1 NG_043939 +HGNC:46757 RN7SL741P RNA, 7SL, cytoplasmic 741, pseudogene pseudogene pseudogene Approved 13q12.13 13q12.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481124 ENSG00000242381 uc058vzd.1 NG_045957 +HGNC:46758 RN7SL742P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46759 RN7SL743P RNA, 7SL, cytoplasmic 743, pseudogene pseudogene pseudogene Approved 16p13.2 16p13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479492 ENSG00000243954 uc059qon.1 NG_045648 +HGNC:46760 RN7SL744P RNA, 7SL, cytoplasmic 744, pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479493 ENSG00000264028 uc058owo.1 NG_045652 +HGNC:46761 RN7SL745P RNA, 7SL, cytoplasmic 745, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481858 ENSG00000242182 uc060nwm.1 NG_045847 +HGNC:46762 RN7SL746P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46763 RN7SL747P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46764 RN7SL748P RNA, 7SL, cytoplasmic 748, pseudogene pseudogene pseudogene Approved 6p21.31 06p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481125 ENSG00000239964 uc063oeh.1 NG_044721 +HGNC:46765 RN7SL749P RNA, 7SL, cytoplasmic 749, pseudogene pseudogene pseudogene Approved 10q26.11 10q26.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479494 ENSG00000242853 uc057wif.1 NG_045657 +HGNC:46766 RN7SL750P RNA, 7SL, cytoplasmic 750, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481126 ENSG00000263672 uc064ghu.1 NG_045962 +HGNC:46767 RN7SL751P RNA, 7SL, cytoplasmic 751, pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479495 ENSG00000240964 uc062lqp.1 NG_045661 +HGNC:46768 RN7SL752P RNA, 7SL, cytoplasmic 752, pseudogene pseudogene pseudogene Approved 3q22.1 03q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481127 ENSG00000239437 uc062nsv.1 NG_044740 +HGNC:46769 RN7SL753P RNA, 7SL, cytoplasmic 753, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479496 ENSG00000264275 uc061rnf.1 NG_045114 +HGNC:46770 RN7SL754P RNA, 7SL, cytoplasmic 754, pseudogene pseudogene pseudogene Approved 10p15.3 10p15.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479497 ENSG00000239822 uc057rdw.1 NG_045667 +HGNC:46771 RN7SL755P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46772 RN7SL756P RNA, 7SL, cytoplasmic 756, pseudogene pseudogene pseudogene Approved 17q24.2 17q24.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481128 ENSG00000244610 uc060jbh.1 NG_044748 +HGNC:46773 RN7SL757P RNA, 7SL, cytoplasmic 757, pseudogene pseudogene pseudogene Approved 22q12.1 22q12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480530 ENSG00000239249 uc062ctw.1 NG_045696 +HGNC:46774 RN7SL758P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46775 RN7SL759P RNA, 7SL, cytoplasmic 759, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479498 ENSG00000278497 uc059gpc.1 NG_045673 +HGNC:46776 RN7SL760P RNA, 7SL, cytoplasmic 760, pseudogene pseudogene pseudogene Approved 8q21.11 08q21.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481129 ENSG00000272469 uc064ntd.1 NG_045969 +HGNC:46777 RN7SL761P RNA, 7SL, cytoplasmic 761, pseudogene pseudogene pseudogene Approved 13q21.33 13q21.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479499 ENSG00000243671 uc058xjy.1 NG_043994 +HGNC:46778 RN7SL762P RNA, 7SL, cytoplasmic 762, pseudogene pseudogene pseudogene Approved 3q13.33 03q13.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479500 ENSG00000244308 uc062mwh.1 NG_044003 +HGNC:46779 RN7SL763P RNA, 7SL, cytoplasmic 763, pseudogene pseudogene pseudogene Approved 9p12 09p12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481130 ENSG00000277774 uc064tex.1 NG_044764 +HGNC:46780 RN7SL764P RNA, 7SL, cytoplasmic 764, pseudogene pseudogene pseudogene Approved 2q35 02q35 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480531 ENSG00000240317 uc061sqs.1 NG_044065 +HGNC:46781 RN7SL765P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46782 RN7SL766P RNA, 7SL, cytoplasmic 766, pseudogene pseudogene pseudogene Approved 13q12.11 13q12.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479501 ENSG00000244197 uc058vwg.1 NG_044012 +HGNC:46783 RN7SL767P RNA, 7SL, cytoplasmic 767, pseudogene pseudogene pseudogene Approved 3q13.2 03q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481131 ENSG00000241529 uc021xcr.2 NG_044773 +HGNC:46784 RN7SL768P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46785 RN7SL769P RNA, 7SL, cytoplasmic 769, pseudogene pseudogene pseudogene Approved 12q24.11 12q24.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479502 ENSG00000276956 uc058tcu.1 NG_044019 +HGNC:46786 RN7SL770P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46787 RN7SL771P RNA, 7SL, cytoplasmic 771, pseudogene pseudogene pseudogene Approved 7q34 07q34 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481132 ENSG00000240173 uc064ioy.1 NG_044780 +HGNC:46788 RN7SL772P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46789 RN7SL773P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46790 RN7SL774P RNA, 7SL, cytoplasmic 774, pseudogene pseudogene pseudogene Approved 17p13.2 17p13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481761 ENSG00000263882 uc059ztc.1 NG_045545 +HGNC:46791 RN7SL775P RNA, 7SL, cytoplasmic 775, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481859 ENSG00000243370 uc060bvk.1 NG_045849 +HGNC:46792 RN7SL776P RNA, 7SL, cytoplasmic 776, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479503 ENSG00000240772 uc063avd.1 NG_044028 +HGNC:46793 RN7SL777P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46794 RN7SL778P RNA, 7SL, cytoplasmic 778, pseudogene pseudogene pseudogene Approved 11q24.3 11q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479504 ENSG00000272412 uc058jdq.1 NG_044036 +HGNC:46795 RN7SL779P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46796 RN7SL780P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46797 RN7SL781P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46798 RN7SL782P RNA, 7SL, cytoplasmic 782, pseudogene pseudogene pseudogene Approved 5q21.3 05q21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481133 ENSG00000239708 uc021ycb.2 NG_044790 +HGNC:46799 RN7SL783P RNA, 7SL, cytoplasmic 783, pseudogene pseudogene pseudogene Approved 13q34 13q34 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479505 ENSG00000265885 uc058yfm.1 NG_044044 +HGNC:46800 RN7SL784P RNA, 7SL, cytoplasmic 784, pseudogene pseudogene pseudogene Approved 17p13.2 17p13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481134 ENSG00000264113 uc059zww.1 NG_045986 +HGNC:46801 RN7SL785P RNA, 7SL, cytoplasmic 785, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480532 ENSG00000266158 uc064yvi.1 NG_044075 +HGNC:46802 RN7SL786P RNA, 7SL, cytoplasmic 786, pseudogene pseudogene pseudogene Approved 11q13.5 11q13.5 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479506 ENSG00000263993 uc058fpa.1 NG_044055 +HGNC:46803 RN7SL787P RNA, 7SL, cytoplasmic 787, pseudogene pseudogene pseudogene Approved 9q13 09q13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479507 ENSG00000274098 uc064tmv.1 NG_045127 +HGNC:46804 RN7SL788P RNA, 7SL, cytoplasmic 788, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481135 ENSG00000241745 uc057gnr.1 NG_045989 +HGNC:46805 RN7SL789P RNA, 7SL, cytoplasmic 789, pseudogene pseudogene pseudogene Approved 19q13.11 19q13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479508 ENSG00000242436 uc060wsc.1 NG_045698 +HGNC:46806 RN7SL790P RNA, 7SL, cytoplasmic 790, pseudogene pseudogene pseudogene Approved Xq13.2 Xq13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481136 ENSG00000239745 uc064zzw.1 NG_044815 +HGNC:46807 RN7SL791P RNA, 7SL, cytoplasmic 791, pseudogene pseudogene pseudogene Approved 5q32 05q32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481860 ENSG00000241291 uc063ijb.1 NG_045857 +HGNC:46808 RN7SL792P RNA, 7SL, cytoplasmic 792, pseudogene pseudogene pseudogene Approved 17p12 17p12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479509 ENSG00000239888 uc060blu.1 NG_044080 +HGNC:46809 RN7SL793P RNA, 7SL, cytoplasmic 793, pseudogene pseudogene pseudogene Approved 12q23.2 12q23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481137 ENSG00000264554 uc031zld.2 NG_044823 +HGNC:46810 RN7SL794P RNA, 7SL, cytoplasmic 794, pseudogene pseudogene pseudogene Approved 9q22.33 09q22.33 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479510 ENSG00000240235 uc064uts.1 NG_044086 +HGNC:46811 RN7SL795P RNA, 7SL, cytoplasmic 795, pseudogene pseudogene pseudogene Approved 18q22.2 18q22.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479511 ENSG00000239748 uc021ulk.1 NG_044097 +HGNC:46812 RN7SL796P RNA, 7SL, cytoplasmic 796, pseudogene pseudogene pseudogene Approved 15q13.2 15q13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 107080653 ENSG00000277031 uc021sho.2 NG_046566 +HGNC:46813 RN7SL797P RNA, 7SL, cytoplasmic 797, pseudogene pseudogene pseudogene Approved 6q16.1 06q16.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481138 ENSG00000242560 uc063qdv.1 NG_044831 +HGNC:46814 RN7SL798P RNA, 7SL, cytoplasmic 798, pseudogene pseudogene pseudogene Approved 8q12.1 08q12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480533 ENSG00000240905 uc064myb.1 NG_044082 +HGNC:46815 RN7SL799P RNA, 7SL, cytoplasmic 799, pseudogene pseudogene pseudogene Approved Xq11.2 Xq11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480382 ENSG00000244006 uc064zpv.1 NG_044922 +HGNC:46816 RN7SL800P RNA, 7SL, cytoplasmic 800, pseudogene pseudogene pseudogene Approved 17q23.2 17q23.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479512 ENSG00000242398 uc060ikl.1 NG_045707 +HGNC:46817 RN7SL801P RNA, 7SL, cytoplasmic 801, pseudogene pseudogene pseudogene Approved 5q11.2 05q11.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481139 ENSG00000241230 uc063doh.1 NG_046004 +HGNC:46818 RN7SL802P RNA, 7SL, cytoplasmic 802, pseudogene pseudogene pseudogene Approved 5q21.1 05q21.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479513 ENSG00000277506 uc063fsu.1 NG_044114 +HGNC:46819 RN7SL803P RNA, 7SL, cytoplasmic 803, pseudogene pseudogene pseudogene Approved 5q33.2 05q33.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479514 ENSG00000272197 uc063izj.1 NG_044122 +HGNC:46820 RN7SL804P RNA, 7SL, cytoplasmic 804, pseudogene pseudogene pseudogene Approved 12q15 12q15 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481140 ENSG00000266185 uc058qtp.1 NG_046007 +HGNC:46821 RN7SL805P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46822 RN7SL806P RNA, 7SL, cytoplasmic 806, pseudogene pseudogene pseudogene Approved 8p11.21 08p11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479515 ENSG00000242719 uc064mng.1 NG_044128 +HGNC:46823 RN7SL807P RNA, 7SL, cytoplasmic 807, pseudogene pseudogene pseudogene Approved 2q36.1 02q36.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481141 ENSG00000243125 uc061tby.1 NG_044857 +HGNC:46824 RN7SL808P RNA, 7SL, cytoplasmic 808, pseudogene pseudogene pseudogene Approved 4q26 04q26 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481861 ENSG00000240637 uc021xqx.2 NG_044466 +HGNC:46825 RN7SL809P RNA, 7SL, cytoplasmic 809, pseudogene pseudogene pseudogene Approved 12q13.3 12q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479516 ENSG00000241217 uc058pqa.1 NG_045724 +HGNC:46826 RN7SL810P RNA, 7SL, cytoplasmic 810, pseudogene pseudogene pseudogene Approved 13q22.3 13q22.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481142 ENSG00000243035 uc058xpz.1 NG_046012 +HGNC:46827 RN7SL811P RNA, 7SL, cytoplasmic 811, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479517 ENSG00000265439 uc063ovo.1 NG_044143 +HGNC:46828 RN7SL812P RNA, 7SL, cytoplasmic 812, pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479518 ENSG00000242876 uc062btf.1 NG_045732 +HGNC:46829 RN7SL813P RNA, 7SL, cytoplasmic 813, pseudogene pseudogene pseudogene Approved 2q24.3 02q24.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480534 ENSG00000241074 uc021vsd.2 NG_044090 +HGNC:46830 RN7SL814P RNA, 7SL, cytoplasmic 814, pseudogene pseudogene pseudogene Approved 5q13.3 05q13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481143 ENSG00000244326 uc063enx.1 NG_044872 +HGNC:46831 RN7SL815P RNA, 7SL, cytoplasmic 815, pseudogene pseudogene pseudogene Approved 3q13.31 03q13.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479519 ENSG00000243359 uc031saz.2 NG_044155 +HGNC:46832 RN7SL816P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46833 RN7SL817P RNA, 7SL, cytoplasmic 817, pseudogene pseudogene pseudogene Approved 2p21 02p21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481144 ENSG00000241791 uc061ivk.1 NG_045202 +HGNC:46834 RN7SL818P RNA, 7SL, cytoplasmic 818, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479520 ENSG00000274234 uc065cvo.1 NG_045740 +HGNC:46835 RN7SL819P RNA, 7SL, cytoplasmic 819, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481145 ENSG00000264251 uc060gbq.1 NG_044889 +HGNC:46836 RN7SL820P RNA, 7SL, cytoplasmic 820, pseudogene pseudogene pseudogene Approved 2q32.3 02q32.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106480535 ENSG00000276200 uc061qwt.1 NG_044101 +HGNC:46837 RN7SL821P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46838 RN7SL822P RNA, 7SL, cytoplasmic 822, pseudogene pseudogene pseudogene Approved 4q12 04q12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479521 ENSG00000239545 uc062wrp.1 NG_044171 +HGNC:46839 RN7SL823P RNA, 7SL, cytoplasmic 823, pseudogene pseudogene pseudogene Approved 19p13.11 19p13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479522 ENSG00000263595 uc060vda.1 NG_045747 +HGNC:46840 RN7SL824P RNA, 7SL, cytoplasmic 824, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481146 ENSG00000242764 uc057ihr.1 NG_044895 +HGNC:46841 RN7SL825P RNA, 7SL, cytoplasmic 825, pseudogene pseudogene pseudogene Approved 10p11.22 10p11.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 107080654 ENSG00000239731 uc057spg.1 NG_046567 +HGNC:46842 RN7SL826P RNA, 7SL, cytoplasmic 826, pseudogene pseudogene pseudogene Approved 8q24.11 08q24.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479523 ENSG00000240151 uc022bac.1 NG_045750 +HGNC:46843 RN7SL827P RNA, 7SL, cytoplasmic 827, pseudogene pseudogene pseudogene Approved 6q13 06q13 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481762 ENSG00000271986 uc063por.1 NG_043706 +HGNC:46844 RN7SL828P RNA, 7SL, cytoplasmic 828, pseudogene pseudogene pseudogene Approved 11q23.3 11q23.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481147 ENSG00000272075 uc058hvr.1 NG_044904 +HGNC:46845 RN7SL829P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46846 RN7SL830P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46847 RN7SL831P RNA, 7SL, cytoplasmic 831, pseudogene pseudogene pseudogene Approved 1p21.3 01p21.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481862 ENSG00000241992 uc057ioi.1 NG_044475 +HGNC:46848 RN7SL832P RNA, 7SL, cytoplasmic 832, pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479524 ENSG00000243819 uc061gqu.1 NG_045144 +HGNC:46849 RN7SL833P RNA, 7SL, cytoplasmic 833, pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479525 ENSG00000244080 uc060tuc.1 NG_045760 +HGNC:46850 RN7SL834P RNA, 7SL, cytoplasmic 834, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481148 ENSG00000243650 uc061tjx.1 NG_046033 +HGNC:46851 RN7SL835P RNA, 7SL, cytoplasmic 835, pseudogene pseudogene pseudogene Approved 19p13.11 19p13.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479526 ENSG00000264250 uc060vcz.1 NG_044205 +HGNC:46852 RN7SL836P RNA, 7SL, cytoplasmic 836, pseudogene pseudogene pseudogene Approved 19q13.32 19q13.32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481149 ENSG00000241226 uc061abd.1 NG_046038 +HGNC:46853 RN7SL837P RNA, 7SL, cytoplasmic 837, pseudogene pseudogene pseudogene Approved 1q42.2 01q42.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480536 ENSG00000240502 uc057qhq.1 NG_044110 +HGNC:46854 RN7SL838P RNA, 7SL, cytoplasmic 838, pseudogene pseudogene pseudogene Approved 11p15.5 11p15.5 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479527 ENSG00000243562 uc021qbl.2 NG_045766 +HGNC:46855 RN7SL839P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46856 RN7SL840P RNA, 7SL, cytoplasmic 840, pseudogene pseudogene pseudogene Approved 10q22.1 10q22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479528 ENSG00000272536 uc057tyr.1 NG_044223 +HGNC:46857 RN7SL841P RNA, 7SL, cytoplasmic 841, pseudogene pseudogene pseudogene Approved 16q12.2 16q12.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481150 ENSG00000239555 uc059uhr.1 NG_044924 +HGNC:46858 RN7SL842P RNA, 7SL, cytoplasmic 842, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479529 ENSG00000243066 uc060uqg.1 NG_045774 +HGNC:46859 RN7SL843P RNA, 7SL, cytoplasmic 843, pseudogene pseudogene pseudogene Approved 22q11.1 22q11.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481151 ENSG00000239547 uc062bgh.1 NG_044934 +HGNC:46860 RN7SL844P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-03-04 +HGNC:46861 RN7SL845P RNA, 7SL, cytoplasmic 845, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481863 ENSG00000244328 uc064jnb.1 NG_045170 +HGNC:46862 RN7SL846P RNA, 7SL, cytoplasmic 846, pseudogene pseudogene pseudogene Approved 10q26.11 10q26.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479530 ENSG00000242818 uc057wiy.1 NG_045778 +HGNC:46863 RN7SL847P RNA, 7SL, cytoplasmic 847, pseudogene pseudogene pseudogene Approved 10p11.22 10p11.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481152 ENSG00000265319 uc057sqy.1 NG_045235 +HGNC:46865 RN7SL849P RNA, 7SL, cytoplasmic 849, pseudogene pseudogene pseudogene Approved 9p23 09p23 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479531 ENSG00000243115 uc064sdh.1 NG_044245 +HGNC:46866 RN7SL850P RNA, 7SL, cytoplasmic 850, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479532 ENSG00000263955 uc059qgz.1 NG_044255 +HGNC:46867 RN7SL851P RNA, 7SL, cytoplasmic 851, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480537 ENSG00000240718 uc064bgl.1 NG_045714 +HGNC:46868 RN7SL852P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46869 RN7SL853P RNA, 7SL, cytoplasmic 853, pseudogene pseudogene pseudogene Approved 15q24.1 15q24.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106481153 ENSG00000274350 uc059lcj.1 NG_045239 +HGNC:46870 RN7SL854P RNA, 7SL, cytoplasmic 854, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480383 ENSG00000239319 uc057hhi.1 NG_044932 +HGNC:46871 RN7SL855P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46872 RN7SL856P RNA, 7SL, cytoplasmic 856, pseudogene pseudogene pseudogene Approved 2p23.3 02p23.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2015-02-12 106479533 ENSG00000276653 uc061her.1 NG_045785 +HGNC:46873 RN7SL857P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46874 RN7SL858P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46875 RN7SL859P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46876 RN7SL860P RNA, 7SL, cytoplasmic 860, pseudogene pseudogene pseudogene Approved 19p12 19p12 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106635537 ENSG00000240713 uc060wjb.1 NG_042889 +HGNC:46877 RN7SL861P RNA, 7SL, cytoplasmic 861, pseudogene pseudogene pseudogene Approved 1q23.3 01q23.3 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479534 ENSG00000243173 uc021pds.2 NG_045788 +HGNC:46878 RN7SL862P RNA, 7SL, cytoplasmic 862, pseudogene pseudogene pseudogene Approved 18p11.22 18p11.22 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479535 ENSG00000242651 uc021ugw.2 NG_044281 +HGNC:46879 RN7SL863P RNA, 7SL, cytoplasmic 863, pseudogene pseudogene pseudogene Approved 3p14.2 03p14.2 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106480538 ENSG00000244632 uc021wzw.2 NG_045719 +HGNC:46880 RN7SL864P RNA, 7SL, cytoplasmic 864, pseudogene pseudogene pseudogene Approved 20p12.1 20p12.1 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479536 ENSG00000239923 uc021waq.2 NG_045792 +HGNC:46881 RN7SL865P RNA, 7SL, cytoplasmic 865, pseudogene pseudogene pseudogene Approved 12q24.21 12q24.21 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481154 ENSG00000240205 uc021reg.2 NG_042917 +HGNC:46882 RN7SL866P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46883 RN7SL867P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46884 RN7SL868P RNA, 7SL, cytoplasmic 868, pseudogene pseudogene pseudogene Approved 5q32 05q32 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106479537 ENSG00000242928 uc063ipb.1 NG_044299 +HGNC:46885 RN7SL869P RNA, 7SL, cytoplasmic 869, pseudogene pseudogene pseudogene Approved 7q21.11 07q21.11 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481864 ENSG00000244392 uc064eug.1 NG_044489 +HGNC:46886 RN7SL870P RNA, 7SL, cytoplasmic 870, pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 RNAs, 7SL, cytoplasmic 850 2013-04-02 2013-04-02 106481155 ENSG00000244732 uc062jeh.1 NG_042927 +HGNC:46887 RN7SL871P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:46888 RN7SL872P entry withdrawn withdrawn withdrawn Entry Withdrawn RNAs, 7SL, cytoplasmic 850 2015-02-12 +HGNC:44282 RNA5-8S1 RNA, 5.8S ribosomal 1 non-coding RNA RNA, ribosomal Approved 13p12 13p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632263 +HGNC:44283 RNA5-8S2 RNA, 5.8S ribosomal 2 non-coding RNA RNA, ribosomal Approved 14p12 14p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632262 +HGNC:44284 RNA5-8S3 RNA, 5.8S ribosomal 3 non-coding RNA RNA, ribosomal Approved 15p12 15p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632261 +HGNC:44285 RNA5-8S4 RNA, 5.8S ribosomal 4 non-coding RNA RNA, ribosomal Approved 21p12 21p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632260 +HGNC:37660 RNA5-8S5 RNA, 5.8S ribosomal 5 non-coding RNA RNA, ribosomal Approved 22p12 22p12 RN5-8S1 Ribosomal RNAs 848 2009-12-16 2012-08-07 2012-08-07 2012-08-13 100008587 uc033dnj.2 NR_003285 +HGNC:41956 RNA5-8SP2 RNA, 5.8S ribosomal pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 RN5-8S2 RNA, 5.8S ribosomal 2 2011-05-23 2012-08-07 2012-08-07 2012-08-07 100873571 ENSG00000200434 uc021thn.2 NG_033434 +HGNC:41957 RNA5-8SP3 RNA, 5.8S ribosomal pseudogene 3 pseudogene pseudogene Approved 9q31.3 09q31.3 RN5-8S3 RNA, 5.8S ribosomal 3 2011-05-23 2012-08-07 2012-08-07 2012-08-07 100873334 ENSG00000201227 uc022blm.1 NG_033470 +HGNC:41958 RNA5-8SP4 RNA, 5.8S ribosomal pseudogene 4 pseudogene pseudogene Approved 19p12 19p12 RN5-8S4 RNA, 5.8S ribosomal 4 2011-05-23 2012-08-07 2012-08-07 2012-08-07 100873572 ENSG00000201966 uc060wln.1 NG_033436 +HGNC:41959 RNA5-8SP5 RNA, 5.8S ribosomal pseudogene 5 pseudogene pseudogene Approved 2q21.2 02q21.2 RN5-8S5 RNA, 5.8S ribosomal 5 2011-05-23 2012-08-07 2012-08-07 2012-08-07 100873335 ENSG00000202174 uc061nxi.1 NG_033472 +HGNC:41960 RNA5-8SP6 RNA, 5.8S ribosomal pseudogene 6 pseudogene pseudogene Approved Yp11.2 Yp11.2 RN5-8S6 RNA, 5.8S ribosomal 6 2011-05-23 2012-08-07 2012-08-07 2012-08-07 100873336 ENSG00000251705 uc022cjg.2 NG_033474 +HGNC:41962 RNA5-8SP7 RNA, 5.8S ribosomal pseudogene 7 pseudogene pseudogene Approved 20p12.3 20p12.3 RN5-8S7 RNA, 5.8S ribosomal 7 2011-05-23 2012-08-07 2012-08-07 2012-08-07 100873573 ENSG00000200313 uc061vfw.1 NG_033438 +HGNC:34362 RNA5S1 RNA, 5S ribosomal 1 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S1 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169751 ENSG00000199352 uc031vqk.2 NR_023363 +HGNC:34363 RNA5S2 RNA, 5S ribosomal 2 non-coding RNA RNA, ribosomal Approved 1q42.13 01q42.13 RN5S2 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169753 ENSG00000201588 uc031vql.2 NR_023364 +HGNC:34364 RNA5S3 RNA, 5S ribosomal 3 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S3 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169754 ENSG00000199337 uc031vqm.2 NR_023365 +HGNC:34365 RNA5S4 RNA, 5S ribosomal 4 non-coding RNA RNA, ribosomal Approved 1q42.13 01q42.13 RN5S4 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169755 ENSG00000200381 uc031vqn.2 NR_023366 +HGNC:34366 RNA5S5 RNA, 5S ribosomal 5 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S5 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-18 100169756 ENSG00000199396 uc031vqo.2 NR_023367 +HGNC:34367 RNA5S6 RNA, 5S ribosomal 6 non-coding RNA RNA, ribosomal Approved 1q42.13 01q42.13 RN5S6 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169757 ENSG00000200624 uc031vqp.2 NR_023368 +HGNC:34368 RNA5S7 RNA, 5S ribosomal 7 non-coding RNA RNA, ribosomal Approved 1q42.13 01q42.13 RN5S7 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-18 100169758 ENSG00000202521 uc031vqq.2 NR_023369 +HGNC:34369 RNA5S8 RNA, 5S ribosomal 8 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S8 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169759 ENSG00000200343 uc031vqr.2 NR_023370 +HGNC:34370 RNA5S9 RNA, 5S ribosomal 9 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S9 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169760 ENSG00000201321 uc031vqs.2 NR_023371 +HGNC:34371 RNA5S10 RNA, 5S ribosomal 10 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S10 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169761 ENSG00000199910 uc031vqt.2 NR_023372 +HGNC:34372 RNA5S11 RNA, 5S ribosomal 11 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S11 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169762 ENSG00000199334 uc057qfe.1 NR_023373 +HGNC:34373 RNA5S12 RNA, 5S ribosomal 12 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S12 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169763 ENSG00000199270 uc057qff.1 NR_023374 +HGNC:34374 RNA5S13 RNA, 5S ribosomal 13 non-coding RNA RNA, ribosomal Approved 1q42.13 01q42.13 RN5S13 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169764 ENSG00000202526 uc057qfg.1 NR_023375 +HGNC:34375 RNA5S14 RNA, 5S ribosomal 14 non-coding RNA RNA, ribosomal Approved 1q42.13 01q42.13 RN5S14 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169765 ENSG00000201355 uc057qfh.1 NR_023376 +HGNC:34376 RNA5S15 RNA, 5S ribosomal 15 non-coding RNA RNA, ribosomal Approved 1q42.13 01q42.13 RN5S15 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169766 ENSG00000201925 uc057qfi.1 NR_023377 +HGNC:34377 RNA5S16 RNA, 5S ribosomal 16 non-coding RNA RNA, ribosomal Approved 1q42.13 01q42.13 RN5S16 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169767 ENSG00000202257 uc057qfj.1 NR_023378 +HGNC:34378 RNA5S17 RNA, 5S ribosomal 17 non-coding RNA RNA, ribosomal Approved 1q42 01q42 RN5S17 Ribosomal RNAs 848 2008-07-03 2012-08-07 2014-11-19 100169768 ENSG00000200370 uc031vqu.2 NR_023379 +HGNC:42586 RNA5SP18 RNA, 5S ribosomal pseudogene 18 pseudogene pseudogene Approved 1q42.13 01q42.13 RN5S18 RNA, 5S ribosomal 18 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873273 ENSG00000212237 uc057qfk.1 NG_033349 +HGNC:42587 RNA5SP19 RNA, 5S ribosomal pseudogene 19 pseudogene pseudogene Approved 1q42.13 01q42.13 RN5S19 RNA, 5S ribosomal 19 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873274 ENSG00000202056 uc057qfc.1 NG_033351 +HGNC:42588 RNA5SP20 RNA, 5S ribosomal pseudogene 20 pseudogene pseudogene Approved 1p31.1 01p31.1 RN5S20 RNA, 5S ribosomal 20 2011-08-08 2012-08-09 2012-08-09 2014-11-19 100873275 ENSG00000251785 uc057hts.1 NG_033353 +HGNC:42589 RNA5SP21 RNA, 5S ribosomal pseudogene 21 pseudogene pseudogene Approved 1p31.1 01p31.1 RN5S21 RNA, 5S ribosomal 21 2011-08-08 2012-08-09 2012-08-09 2014-11-19 100873276 ENSG00000222849 uc057huo.1 NG_033355 +HGNC:42590 RNA5SP22 RNA, 5S ribosomal pseudogene 22 pseudogene pseudogene Approved 1p31.1 01p31.1 RN5S22 RNA, 5S ribosomal 22 2011-08-08 2012-08-09 2012-08-09 2014-11-19 100873277 ENSG00000202263 uc021oov.1 NG_033357 +HGNC:42591 RNA5SP23 RNA, 5S ribosomal pseudogene 23 pseudogene pseudogene Approved 1p31.1 01p31.1 RN5S23 RNA, 5S ribosomal 23 2011-08-08 2012-08-09 2012-08-09 2014-11-19 100873278 ENSG00000212308 uc057hvs.1 NG_033359 +HGNC:42600 RNA5SP24 RNA, 5S ribosomal pseudogene 24 pseudogene pseudogene Approved 13q12.11 13q12.11 RN5S24 RNA, 5S ribosomal 24 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873356 ENSG00000252287 uc058vsj.1 NG_033495 +HGNC:42601 RNA5SP25 RNA, 5S ribosomal pseudogene 25 pseudogene pseudogene Approved 13q12.11 13q12.11 RN5S25 RNA, 5S ribosomal 25 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873357 ENSG00000222747 uc058vvn.1 NG_033497 +HGNC:42602 RNA5SP26 RNA, 5S ribosomal pseudogene 26 pseudogene pseudogene Approved 13q13.3 13q13.3 RN5S26 RNA, 5S ribosomal 26 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873358 ENSG00000199276 uc058wna.1 NG_047019 +HGNC:42603 RNA5SP27 RNA, 5S ribosomal pseudogene 27 pseudogene pseudogene Approved 13q14.13 13q14.13 RN5S27 RNA, 5S ribosomal 27 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873359 ENSG00000200709 uc058wvr.1 NG_033500 +HGNC:42604 RNA5SP28 RNA, 5S ribosomal pseudogene 28 pseudogene pseudogene Approved 13q14.3 13q14.3 RN5S28 RNA, 5S ribosomal 28 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873360 ENSG00000200711 uc058xco.1 NG_033502 +HGNC:42605 RNA5SP29 RNA, 5S ribosomal pseudogene 29 pseudogene pseudogene Approved 13q14.3 13q14.3 RN5S29 RNA, 5S ribosomal 29 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873361 ENSG00000222920 uc021rjt.1 NG_033504 +HGNC:42606 RNA5SP30 RNA, 5S ribosomal pseudogene 30 pseudogene pseudogene Approved 13q21.1 13q21.1 RN5S30 RNA, 5S ribosomal 30 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873362 ENSG00000202422 uc058xid.1 NG_033506 +HGNC:42607 RNA5SP31 RNA, 5S ribosomal pseudogene 31 pseudogene pseudogene Approved 13q21.2 13q21.2 RN5S31 RNA, 5S ribosomal 31 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873363 ENSG00000223076 uc058xiu.1 NG_033508 +HGNC:42608 RNA5SP32 RNA, 5S ribosomal pseudogene 32 pseudogene pseudogene Approved 13q21.33 13q21.33 RN5S32 RNA, 5S ribosomal 32 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873364 ENSG00000200037 uc058xkl.1 NG_033510 +HGNC:42609 RNA5SP33 RNA, 5S ribosomal pseudogene 33 pseudogene pseudogene Approved 13q31.1 13q31.1 RN5S33 RNA, 5S ribosomal 33 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873365 ENSG00000252496 uc058xqx.1 NG_033512 +HGNC:42610 RNA5SP34 RNA, 5S ribosomal pseudogene 34 pseudogene pseudogene Approved 13q31.3 13q31.3 RN5S34 RNA, 5S ribosomal 34 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873366 ENSG00000252696 uc058xsp.1 NG_033514 +HGNC:42611 RNA5SP35 RNA, 5S ribosomal pseudogene 35 pseudogene pseudogene Approved 13q31.3 13q31.3 RN5S35 RNA, 5S ribosomal 35 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873367 ENSG00000212559 uc021rli.1 NG_033516 +HGNC:42612 RNA5SP36 RNA, 5S ribosomal pseudogene 36 pseudogene pseudogene Approved 13q32.1 13q32.1 RN5S36 RNA, 5S ribosomal 36 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873368 ENSG00000222129 uc058xtq.1 NG_033518 +HGNC:42613 RNA5SP37 RNA, 5S ribosomal pseudogene 37 pseudogene pseudogene Approved 13q32.1 13q32.1 RN5S37 RNA, 5S ribosomal 37 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873369 ENSG00000202290 uc058xvd.1 NG_033520 +HGNC:42614 RNA5SP38 RNA, 5S ribosomal pseudogene 38 pseudogene pseudogene Approved 13q33.2 13q33.2 RN5S38 RNA, 5S ribosomal 38 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873370 ENSG00000222682 uc021rmi.1 NG_033522 +HGNC:42615 RNA5SP39 RNA, 5S ribosomal pseudogene 39 pseudogene pseudogene Approved 13q33.3 13q33.3 RN5S39 RNA, 5S ribosomal 39 2011-08-08 2012-08-09 2012-08-09 2012-08-07 100873371 ENSG00000223177 uc058yet.1 NG_033524 +HGNC:42816 RNA5SP40 RNA, 5S ribosomal pseudogene 40 pseudogene pseudogene Approved 1p36.22 01p36.22 RN5S40 RNA, 5S ribosomal 40 2011-08-24 2012-08-09 2012-08-09 2014-11-19 100873279 ENSG00000252956 uc021ofx.1 NG_033361 +HGNC:42817 RNA5SP41 RNA, 5S ribosomal pseudogene 41 pseudogene pseudogene Approved 1p36.21 01p36.21 RN5S41 RNA, 5S ribosomal 41 2011-08-24 2012-08-09 2012-08-09 2014-11-19 100873280 ENSG00000222952 uc057clm.1 NG_033363 +HGNC:42818 RNA5SP42 RNA, 5S ribosomal pseudogene 42 pseudogene pseudogene Approved 1p35.1 01p35.1 RN5S42 RNA, 5S ribosomal 42 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873281 ENSG00000201148 uc057eqn.1 NG_033365 +HGNC:42819 RNA5SP43 RNA, 5S ribosomal pseudogene 43 pseudogene pseudogene Approved 1p34.3 01p34.3 RN5S43 RNA, 5S ribosomal 43 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873282 ENSG00000252368 uc057ewb.1 NG_033367 +HGNC:42820 RNA5SP44 RNA, 5S ribosomal pseudogene 44 pseudogene pseudogene Approved 1p34.3 01p34.3 RN5S44 RNA, 5S ribosomal 44 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873283 ENSG00000222378 uc021olu.1 NG_033369 +HGNC:42821 RNA5SP45 RNA, 5S ribosomal pseudogene 45 pseudogene pseudogene Approved 1p34.2 01p34.2 RN5S45 RNA, 5S ribosomal 45 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873284 ENSG00000252563 uc021ome.1 NG_033371 +HGNC:42822 RNA5SP46 RNA, 5S ribosomal pseudogene 46 pseudogene pseudogene Approved 1p34.2 01p34.2 RN5S46 RNA, 5S ribosomal 46 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873285 ENSG00000199240 uc057fme.1 NG_033373 +HGNC:42823 RNA5SP47 RNA, 5S ribosomal pseudogene 47 pseudogene pseudogene Approved 1p34.1 01p34.1 RN5S47 RNA, 5S ribosomal 47 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873286 ENSG00000253039 uc057fxd.1 NG_033375 +HGNC:42824 RNA5SP48 RNA, 5S ribosomal pseudogene 48 pseudogene pseudogene Approved 1p32.3 01p32.3 RN5S48 RNA, 5S ribosomal 48 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873287 ENSG00000200839 uc057gnd.1 NG_033377 +HGNC:42825 RNA5SP49 RNA, 5S ribosomal pseudogene 49 pseudogene pseudogene Approved 1p31.3 01p31.3 RN5S49 RNA, 5S ribosomal 49 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873288 ENSG00000252259 uc057hdx.1 NG_033379 +HGNC:42827 RNA5SP50 RNA, 5S ribosomal pseudogene 50 pseudogene pseudogene Approved 1p31.1 01p31.1 RN5S50 RNA, 5S ribosomal 50 2011-08-25 2012-08-09 2012-08-09 2014-11-19 106478992 ENSG00000200601 uc057hpd.1 NG_044035 +HGNC:42828 RNA5SP51 RNA, 5S ribosomal pseudogene 51 pseudogene pseudogene Approved 1p22.3 01p22.3 RN5S51 RNA, 5S ribosomal 51 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873289 ENSG00000201620 uc057iav.1 NG_033381 +HGNC:42829 RNA5SP52 RNA, 5S ribosomal pseudogene 52 pseudogene pseudogene Approved 1p22.3 01p22.3 RN5S52 RNA, 5S ribosomal 52 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873290 ENSG00000199318 uc021opl.1 NG_033383 +HGNC:42830 RNA5SP53 RNA, 5S ribosomal pseudogene 53 pseudogene pseudogene Approved 1p22.1 01p22.1 RN5S53 RNA, 5S ribosomal 53 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873291 ENSG00000212601 uc057ikg.1 NG_033385 +HGNC:42831 RNA5SP54 RNA, 5S ribosomal pseudogene 54 pseudogene pseudogene Approved 1p13.3 01p13.3 RN5S54 RNA, 5S ribosomal 54 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873292 ENSG00000252760 uc057jgm.1 NG_033387 +HGNC:42832 RNA5SP55 RNA, 5S ribosomal pseudogene 55 pseudogene pseudogene Approved 1p13.1 01p13.1 RN5S55 RNA, 5S ribosomal 55 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873293 ENSG00000252510 uc021osl.1 NG_033389 +HGNC:42833 RNA5SP56 RNA, 5S ribosomal pseudogene 56 pseudogene pseudogene Approved 1p12 01p12 RN5S56 RNA, 5S ribosomal 56 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873294 ENSG00000222209 uc057jur.1 NG_033391 +HGNC:42834 RNA5SP57 RNA, 5S ribosomal pseudogene 57 pseudogene pseudogene Approved 1q21.1 01q21.1 "RN5S57|RNA5SP58|RN5S58" "RNA, 5S ribosomal 57|RNA, 5S ribosomal pseudogene 58|RNA, 5S ribosomal 58" 2011-08-25 2012-08-09 2012-08-09 2015-03-05 106480754 ENSG00000238765 uc021ovd.1 NG_043828 +HGNC:42836 RNA5SP59 RNA, 5S ribosomal pseudogene 59 pseudogene pseudogene Approved 1q21.2 01q21.2 RN5S59 RNA, 5S ribosomal 59 2011-08-25 2012-08-09 2012-08-09 2014-11-19 106480357 ENSG00000222854 uc057jzi.1 NG_044719 +HGNC:42837 RNA5SP60 RNA, 5S ribosomal pseudogene 60 pseudogene pseudogene Approved 1q23.2 01q23.2 RN5S60 RNA, 5S ribosomal 60 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873295 ENSG00000222552 uc057mgu.1 NG_033393 +HGNC:42838 RNA5SP61 RNA, 5S ribosomal pseudogene 61 pseudogene pseudogene Approved 1q23.3 01q23.3 RN5S61 RNA, 5S ribosomal 61 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873296 ENSG00000252262 uc021pdq.1 NG_033395 +HGNC:42839 RNA5SP62 RNA, 5S ribosomal pseudogene 62 pseudogene pseudogene Approved 1q23.3 01q23.3 RN5S62 RNA, 5S ribosomal 62 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873297 ENSG00000200327 uc021pdv.1 NG_033397 +HGNC:42840 RNA5SP63 RNA, 5S ribosomal pseudogene 63 pseudogene pseudogene Approved 1q23.3 01q23.3 RN5S63 RNA, 5S ribosomal 63 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873298 ENSG00000212527 uc021pdw.1 NG_033399 +HGNC:42841 RNA5SP64 RNA, 5S ribosomal pseudogene 64 pseudogene pseudogene Approved 1q24.1 01q24.1 RN5S64 RNA, 5S ribosomal 64 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873299 ENSG00000207341 uc057mzt.1 NG_033401 +HGNC:42842 RNA5SP65 RNA, 5S ribosomal pseudogene 65 pseudogene pseudogene Approved 1q24.1 01q24.1 RN5S65 RNA, 5S ribosomal 65 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873300 ENSG00000200036 uc057nap.1 NG_033403 +HGNC:42843 RNA5SP66 RNA, 5S ribosomal pseudogene 66 pseudogene pseudogene Approved 1q24.2 01q24.2 RN5S66 RNA, 5S ribosomal 66 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873301 ENSG00000252987 uc057ndf.1 NG_033405 +HGNC:42844 RNA5SP67 RNA, 5S ribosomal pseudogene 67 pseudogene pseudogene Approved 1q25.1 01q25.1 RN5S67 RNA, 5S ribosomal 67 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873302 ENSG00000252231 uc057nkv.1 NG_033407 +HGNC:42845 RNA5SP68 RNA, 5S ribosomal pseudogene 68 pseudogene pseudogene Approved 1q25.1 01q25.1 RN5S68 RNA, 5S ribosomal 68 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873303 ENSG00000200755 uc057nkz.1 NG_033409 +HGNC:42846 RNA5SP69 RNA, 5S ribosomal pseudogene 69 pseudogene pseudogene Approved 1q25.2 01q25.2 RN5S69 RNA, 5S ribosomal 69 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873304 ENSG00000201347 uc057nop.1 NG_033411 +HGNC:42847 RNA5SP70 RNA, 5S ribosomal pseudogene 70 pseudogene pseudogene Approved 1q25.3 01q25.3 RN5S70 RNA, 5S ribosomal 70 2011-08-25 2012-08-09 2012-08-09 2014-11-19 106480436 ENSG00000252977 uc021pft.1 NG_045410 +HGNC:42848 RNA5SP71 RNA, 5S ribosomal pseudogene 71 pseudogene pseudogene Approved 1q25.3 01q25.3 RN5S71 RNA, 5S ribosomal 71 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873305 ENSG00000199837 uc057nuz.1 NG_033413 +HGNC:42849 RNA5SP72 RNA, 5S ribosomal pseudogene 72 pseudogene pseudogene Approved 1q25.3 01q25.3 RN5S72 RNA, 5S ribosomal 72 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873306 ENSG00000201312 uc057nxl.1 NG_033415 +HGNC:42850 RNA5SP73 RNA, 5S ribosomal pseudogene 73 pseudogene pseudogene Approved 1q31.1 01q31.1 RN5S73 RNA, 5S ribosomal 73 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873307 ENSG00000252553 uc057oad.1 NG_033417 +HGNC:42851 RNA5SP74 RNA, 5S ribosomal pseudogene 74 pseudogene pseudogene Approved 1q32.1 01q32.1 RN5S74 RNA, 5S ribosomal 74 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873308 ENSG00000200408 uc057orf.1 NG_033419 +HGNC:42852 RNA5SP75 RNA, 5S ribosomal pseudogene 75 pseudogene pseudogene Approved 1q32.1 01q32.1 RN5S75 RNA, 5S ribosomal 75 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873309 ENSG00000252650 uc021phz.1 NG_033421 +HGNC:42853 RNA5SP76 RNA, 5S ribosomal pseudogene 76 pseudogene pseudogene Approved 1q41 01q41 RN5S76 RNA, 5S ribosomal 76 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873310 ENSG00000252086 uc057pmz.1 NG_033423 +HGNC:42854 RNA5SP77 RNA, 5S ribosomal pseudogene 77 pseudogene pseudogene Approved 1q42.13 01q42.13 RN5S77 RNA, 5S ribosomal 77 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873311 ENSG00000202264 uc057qaa.1 NG_033425 +HGNC:42855 RNA5SP78 RNA, 5S ribosomal pseudogene 78 pseudogene pseudogene Approved 1q42.13 01q42.13 RN5S78 RNA, 5S ribosomal 78 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873312 ENSG00000201492 uc057qgi.1 NG_033427 +HGNC:42856 RNA5SP79 RNA, 5S ribosomal pseudogene 79 pseudogene pseudogene Approved 1q42.2 01q42.2 RN5S79 RNA, 5S ribosomal 79 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873313 ENSG00000202063 uc057qhl.1 NG_033429 +HGNC:42857 RNA5SP80 RNA, 5S ribosomal pseudogene 80 pseudogene pseudogene Approved 1q42.2 01q42.2 RN5S80 RNA, 5S ribosomal 80 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873314 ENSG00000222407 uc057qir.1 NG_033431 +HGNC:42858 RNA5SP81 RNA, 5S ribosomal pseudogene 81 pseudogene pseudogene Approved 1q43 01q43 RN5S81 RNA, 5S ribosomal 81 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873315 ENSG00000222120 uc057qtu.1 NG_033433 +HGNC:42859 RNA5SP82 RNA, 5S ribosomal pseudogene 82 pseudogene pseudogene Approved 1q44 01q44 RN5S82 RNA, 5S ribosomal 82 2011-08-25 2012-08-09 2012-08-09 2014-11-19 100873316 ENSG00000252516 uc057qzy.1 NG_033435 +HGNC:42882 RNA5SP84 RNA, 5S ribosomal pseudogene 84 pseudogene pseudogene Approved 2p25.1 02p25.1 RN5S84 RNA, 5S ribosomal 84 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873317 ENSG00000201610 uc061gsp.1 NG_033437 +HGNC:42883 RNA5SP85 RNA, 5S ribosomal pseudogene 85 pseudogene pseudogene Approved 2p25.1 02p25.1 RN5S85 RNA, 5S ribosomal 85 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873318 ENSG00000202248 uc061gst.1 NG_033439 +HGNC:42884 RNA5SP86 RNA, 5S ribosomal pseudogene 86 pseudogene pseudogene Approved 2p24.1 02p24.1 RN5S86 RNA, 5S ribosomal 86 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873319 ENSG00000212171 uc061gyu.1 NG_033441 +HGNC:42885 RNA5SP87 RNA, 5S ribosomal pseudogene 87 pseudogene pseudogene Approved 2p24.1 02p24.1 RN5S87 RNA, 5S ribosomal 87 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873320 ENSG00000206882 uc061haf.1 NG_033443 +HGNC:42886 RNA5SP88 RNA, 5S ribosomal pseudogene 88 pseudogene pseudogene Approved 2p23.3 02p23.3 RN5S88 RNA, 5S ribosomal 88 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873321 ENSG00000202430 uc061hda.1 NG_033446 +HGNC:42887 RNA5SP89 RNA, 5S ribosomal pseudogene 89 pseudogene pseudogene Approved 2p23.2 02p23.2 RN5S89 RNA, 5S ribosomal 89 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873322 ENSG00000222232 uc021vfh.1 NG_033448 +HGNC:42888 RNA5SP90 RNA, 5S ribosomal pseudogene 90 pseudogene pseudogene Approved 2p23.1 02p23.1 RN5S90 RNA, 5S ribosomal 90 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873323 ENSG00000201671 uc021vfo.1 NG_033450 +HGNC:42889 RNA5SP91 RNA, 5S ribosomal pseudogene 91 pseudogene pseudogene Approved 2p22.3 02p22.3 RN5S91 RNA, 5S ribosomal 91 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873324 ENSG00000212204 uc021vfu.1 NG_033452 +HGNC:42890 RNA5SP92 RNA, 5S ribosomal pseudogene 92 pseudogene pseudogene Approved 2p22.3 02p22.3 RN5S92 RNA, 5S ribosomal 92 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873325 ENSG00000252246 uc061hzg.1 NG_033454 +HGNC:42891 RNA5SP93 RNA, 5S ribosomal pseudogene 93 pseudogene pseudogene Approved 2p16.1 02p16.1 RN5S93 RNA, 5S ribosomal 93 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873326 ENSG00000199395 uc021vhy.1 NG_033456 +HGNC:42892 RNA5SP94 RNA, 5S ribosomal pseudogene 94 pseudogene pseudogene Approved 2p16.1 02p16.1 RN5S94 RNA, 5S ribosomal 94 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873327 ENSG00000252726 uc021vib.1 NG_033458 +HGNC:42893 RNA5SP95 RNA, 5S ribosomal pseudogene 95 pseudogene pseudogene Approved 2p16.1 02p16.1 RN5S95 RNA, 5S ribosomal 95 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873328 ENSG00000222251 uc061jlp.1 NG_033460 +HGNC:42894 RNA5SP96 RNA, 5S ribosomal pseudogene 96 pseudogene pseudogene Approved 2p13.3 02p13.3 RN5S96 RNA, 5S ribosomal 96 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873329 ENSG00000251850 uc061jzg.1 NG_033462 +HGNC:42895 RNA5SP97 RNA, 5S ribosomal pseudogene 97 pseudogene pseudogene Approved 2p13.1 02p13.1 RN5S97 RNA, 5S ribosomal 97 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873330 ENSG00000201876 uc021vjl.1 NG_033464 +HGNC:42896 RNA5SP98 RNA, 5S ribosomal pseudogene 98 pseudogene pseudogene Approved 2p12 02p12 RN5S98 RNA, 5S ribosomal 98 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873331 ENSG00000200028 uc021vjp.1 NG_033466 +HGNC:42897 RNA5SP99 RNA, 5S ribosomal pseudogene 99 pseudogene pseudogene Approved 2p12 02p12 RN5S99 RNA, 5S ribosomal 99 2011-09-05 2012-08-09 2012-08-09 2014-11-19 106478993 ENSG00000200890 uc021vju.1 NG_044042 +HGNC:42898 RNA5SP100 RNA, 5S ribosomal pseudogene 100 pseudogene pseudogene Approved 2p11.1 02p11.1 RN5S100 RNA, 5S ribosomal 100 2011-09-05 2012-08-09 2012-08-09 2014-11-19 106480755 ENSG00000222835 uc061lsi.1 NG_043836 +HGNC:42899 RNA5SP101 RNA, 5S ribosomal pseudogene 101 pseudogene pseudogene Approved 2q11.2 02q11.2 RN5S101 RNA, 5S ribosomal 101 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873372 ENSG00000252845 uc061lyc.1 NG_033526 +HGNC:42900 RNA5SP102 RNA, 5S ribosomal pseudogene 102 pseudogene pseudogene Approved 2q14.3 02q14.3 RN5S102 RNA, 5S ribosomal 102 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873373 ENSG00000252674 uc061nmy.1 NG_033528 +HGNC:42901 RNA5SP103 RNA, 5S ribosomal pseudogene 103 pseudogene pseudogene Approved 2q14.3 02q14.3 RN5S103 RNA, 5S ribosomal 103 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873374 ENSG00000238379 uc061nrv.1 NG_033530 +HGNC:42902 RNA5SP104 RNA, 5S ribosomal pseudogene 104 pseudogene pseudogene Approved 2q21.2 02q21.2 RN5S104 RNA, 5S ribosomal 104 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873375 ENSG00000222921 uc061nyi.1 NG_033532 +HGNC:42903 RNA5SP105 RNA, 5S ribosomal pseudogene 105 pseudogene pseudogene Approved 2q22.1 02q22.1 RN5S105 RNA, 5S ribosomal 105 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873376 ENSG00000212425 uc021vqb.1 NG_033534 +HGNC:42904 RNA5SP106 RNA, 5S ribosomal pseudogene 106 pseudogene pseudogene Approved 2q22.3 02q22.3 RN5S106 RNA, 5S ribosomal 106 2011-09-05 2012-08-09 2012-08-09 2014-11-19 106478994 ENSG00000253083 uc021vqp.1 NG_044053 +HGNC:42905 RNA5SP107 RNA, 5S ribosomal pseudogene 107 pseudogene pseudogene Approved 2q24.1 02q24.1 RN5S107 RNA, 5S ribosomal 107 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873377 ENSG00000223290 uc061osa.1 NG_033536 +HGNC:42906 RNA5SP108 RNA, 5S ribosomal pseudogene 108 pseudogene pseudogene Approved 2q24.2 02q24.2 RN5S108 RNA, 5S ribosomal 108 2011-09-05 2012-08-09 2012-08-09 2015-01-30 100873378 ENSG00000271924 uc061oyy.1 NG_033538 +HGNC:42907 RNA5SP109 RNA, 5S ribosomal pseudogene 109 pseudogene pseudogene Approved 2q24.2 02q24.2 RN5S109 RNA, 5S ribosomal 109 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873379 ENSG00000212312 uc021vrv.1 NG_033540 +HGNC:42908 RNA5SP110 RNA, 5S ribosomal pseudogene 110 pseudogene pseudogene Approved 2q24.3 02q24.3 RN5S110 RNA, 5S ribosomal 110 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873380 ENSG00000199508 uc061pcr.1 NG_033542 +HGNC:42909 RNA5SP111 RNA, 5S ribosomal pseudogene 111 pseudogene pseudogene Approved 2q24.3 02q24.3 RN5S111 RNA, 5S ribosomal 111 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873381 ENSG00000223318 uc021vrx.1 NG_033544 +HGNC:42910 RNA5SP112 RNA, 5S ribosomal pseudogene 112 pseudogene pseudogene Approved 2q31.2 02q31.2 RN5S112 RNA, 5S ribosomal 112 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873382 ENSG00000251746 uc061pzs.1 NG_033546 +HGNC:42911 RNA5SP113 RNA, 5S ribosomal pseudogene 113 pseudogene pseudogene Approved 2q31.3 02q31.3 RN5S113 RNA, 5S ribosomal 113 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873383 ENSG00000222418 uc021vtp.1 NG_033548 +HGNC:42912 RNA5SP114 RNA, 5S ribosomal pseudogene 114 pseudogene pseudogene Approved 2q32.1 02q32.1 RN5S114 RNA, 5S ribosomal 114 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873384 ENSG00000200650 uc061qnf.1 NG_033550 +HGNC:42913 RNA5SP115 RNA, 5S ribosomal pseudogene 115 pseudogene pseudogene Approved 2q33.1 02q33.1 RN5S115 RNA, 5S ribosomal 115 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873385 ENSG00000223092 uc061rft.1 NG_033552 +HGNC:42914 RNA5SP116 RNA, 5S ribosomal pseudogene 116 pseudogene pseudogene Approved 2q33.3 02q33.3 RN5S116 RNA, 5S ribosomal 116 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873386 ENSG00000251941 uc061rwl.1 NG_033554 +HGNC:42915 RNA5SP117 RNA, 5S ribosomal pseudogene 117 pseudogene pseudogene Approved 2q34 02q34 RN5S117 RNA, 5S ribosomal 117 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873387 ENSG00000202164 uc061rxi.1 NG_033556 +HGNC:42916 RNA5SP118 RNA, 5S ribosomal pseudogene 118 pseudogene pseudogene Approved 2q34 02q34 RN5S118 RNA, 5S ribosomal 118 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873388 ENSG00000222317 uc021vvw.1 NG_033558 +HGNC:42917 RNA5SP119 RNA, 5S ribosomal pseudogene 119 pseudogene pseudogene Approved 2q34 02q34 RN5S119 RNA, 5S ribosomal 119 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873389 ENSG00000199585 uc061rzs.1 NG_033560 +HGNC:42918 RNA5SP120 RNA, 5S ribosomal pseudogene 120 pseudogene pseudogene Approved 2q35 02q35 RN5S120 RNA, 5S ribosomal 120 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873390 ENSG00000222832 uc061sgj.1 NG_033562 +HGNC:42919 RNA5SP121 RNA, 5S ribosomal pseudogene 121 pseudogene pseudogene Approved 2q36.3 02q36.3 RN5S121 RNA, 5S ribosomal 121 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873391 ENSG00000252346 uc061tgl.1 NG_033564 +HGNC:42920 RNA5SP122 RNA, 5S ribosomal pseudogene 122 pseudogene pseudogene Approved 2q37.3 02q37.3 RN5S122 RNA, 5S ribosomal 122 2011-09-05 2012-08-09 2012-08-09 2014-11-19 100873392 ENSG00000207186 uc061urx.1 NG_033566 +HGNC:43023 RNA5SP123 RNA, 5S ribosomal pseudogene 123 pseudogene pseudogene Approved 3p25.2 03p25.2 RN5S123 RNA, 5S ribosomal 123 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873393 ENSG00000200114 uc062gvj.1 NG_033568 +HGNC:43024 RNA5SP124 RNA, 5S ribosomal pseudogene 124 pseudogene pseudogene Approved 3p25.1 03p25.1 RN5S124 RNA, 5S ribosomal 124 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873394 ENSG00000199609 uc062gzp.1 NG_033570 +HGNC:43025 RNA5SP125 RNA, 5S ribosomal pseudogene 125 pseudogene pseudogene Approved 3p24.2 03p24.2 RN5S125 RNA, 5S ribosomal 125 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873395 ENSG00000201713 uc021wuf.1 NG_033572 +HGNC:43026 RNA5SP126 RNA, 5S ribosomal pseudogene 126 pseudogene pseudogene Approved 3p24.2 03p24.2 RN5S126 RNA, 5S ribosomal 126 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873396 ENSG00000201962 uc062hoo.1 NG_033574 +HGNC:43027 RNA5SP127 RNA, 5S ribosomal pseudogene 127 pseudogene pseudogene Approved 3p23 03p23 RN5S127 RNA, 5S ribosomal 127 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873397 ENSG00000222983 uc062hth.1 NG_033576 +HGNC:43028 RNA5SP128 RNA, 5S ribosomal pseudogene 128 pseudogene pseudogene Approved 3p22.3 03p22.3 RN5S128 RNA, 5S ribosomal 128 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873398 ENSG00000202175 uc021wuz.1 NG_033578 +HGNC:43029 RNA5SP129 RNA, 5S ribosomal pseudogene 129 pseudogene pseudogene Approved 3p22.2 03p22.2 RN5S129 RNA, 5S ribosomal 129 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873399 ENSG00000222208 uc062icy.1 NG_033580 +HGNC:43030 RNA5SP130 RNA, 5S ribosomal pseudogene 130 pseudogene pseudogene Approved 3p21.31 03p21.31 RN5S130 RNA, 5S ribosomal 130 2011-10-07 2012-08-09 2012-08-09 2014-11-19 106478995 ENSG00000201301 uc062juj.1 NG_044061 +HGNC:43031 RNA5SP131 RNA, 5S ribosomal pseudogene 131 pseudogene pseudogene Approved 3p21.31 03p21.31 RN5S131 RNA, 5S ribosomal 131 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873400 ENSG00000202322 uc021wyq.1 NG_033582 +HGNC:43032 RNA5SP132 RNA, 5S ribosomal pseudogene 132 pseudogene pseudogene Approved 3p21.2 03p21.2 RN5S132 RNA, 5S ribosomal 132 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873401 ENSG00000201595 uc032rnr.2 NG_033584 +HGNC:43033 RNA5SP133 RNA, 5S ribosomal pseudogene 133 pseudogene pseudogene Approved 3p14.3 03p14.3 RN5S133 RNA, 5S ribosomal 133 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873402 ENSG00000200238 uc021wzq.1 NG_033586 +HGNC:43034 RNA5SP134 RNA, 5S ribosomal pseudogene 134 pseudogene pseudogene Approved 3p14.2 03p14.2 RN5S134 RNA, 5S ribosomal 134 2011-10-07 2012-08-09 2012-08-09 2014-11-19 106480756 ENSG00000252301 uc021wzx.1 NG_045596 +HGNC:43035 RNA5SP135 RNA, 5S ribosomal pseudogene 135 pseudogene pseudogene Approved 3p14.1 03p14.1 RN5S135 RNA, 5S ribosomal 135 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873403 ENSG00000252828 uc021xai.1 NG_033588 +HGNC:43036 RNA5SP136 RNA, 5S ribosomal pseudogene 136 pseudogene pseudogene Approved 3p13 03p13 RN5S136 RNA, 5S ribosomal 136 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873404 ENSG00000222838 uc062lng.1 NG_033590 +HGNC:43037 RNA5SP137 RNA, 5S ribosomal pseudogene 137 pseudogene pseudogene Approved 3q21.2 03q21.2 RN5S137 RNA, 5S ribosomal 137 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873405 ENSG00000252642 uc021xde.1 NG_033593 +HGNC:43038 RNA5SP138 RNA, 5S ribosomal pseudogene 138 pseudogene pseudogene Approved 3q21.3 03q21.3 RN5S138 RNA, 5S ribosomal 138 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873406 ENSG00000201968 uc062nkz.1 NG_033595 +HGNC:43039 RNA5SP139 RNA, 5S ribosomal pseudogene 139 pseudogene pseudogene Approved 3q21.3 03q21.3 RN5S139 RNA, 5S ribosomal 139 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873407 ENSG00000201210 uc021xdi.1 NG_033597 +HGNC:43040 RNA5SP140 RNA, 5S ribosomal pseudogene 140 pseudogene pseudogene Approved 3q22.1 03q22.1 RN5S140 RNA, 5S ribosomal 140 2011-10-07 2012-08-09 2012-08-09 2014-11-19 106478996 ENSG00000201394 uc021xeg.1 NG_044070 +HGNC:43041 RNA5SP141 RNA, 5S ribosomal pseudogene 141 pseudogene pseudogene Approved 3q22.2 03q22.2 RN5S141 RNA, 5S ribosomal 141 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873408 ENSG00000201413 uc062ocg.1 NG_033599 +HGNC:43042 RNA5SP142 RNA, 5S ribosomal pseudogene 142 pseudogene pseudogene Approved 3q22.3 03q22.3 RN5S142 RNA, 5S ribosomal 142 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873409 ENSG00000201325 uc021xeo.1 NG_033601 +HGNC:43043 RNA5SP143 RNA, 5S ribosomal pseudogene 143 pseudogene pseudogene Approved 3q23 03q23 RN5S143 RNA, 5S ribosomal 143 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873410 ENSG00000252745 uc021xev.1 NG_033603 +HGNC:43044 RNA5SP144 RNA, 5S ribosomal pseudogene 144 pseudogene pseudogene Approved 3q24 03q24 RN5S144 RNA, 5S ribosomal 144 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873411 ENSG00000222778 uc062ort.1 NG_033605 +HGNC:43045 RNA5SP145 RNA, 5S ribosomal pseudogene 145 pseudogene pseudogene Approved 3q25.1 03q25.1 RN5S145 RNA, 5S ribosomal 145 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873412 ENSG00000199994 uc021xfx.1 NG_033607 +HGNC:43046 RNA5SP146 RNA, 5S ribosomal pseudogene 146 pseudogene pseudogene Approved 3q25.31 03q25.31 RN5S146 RNA, 5S ribosomal 146 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873413 ENSG00000222675 uc062pii.1 NG_033609 +HGNC:43047 RNA5SP147 RNA, 5S ribosomal pseudogene 147 pseudogene pseudogene Approved 3q26.32 03q26.32 RN5S147 RNA, 5S ribosomal 147 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873414 ENSG00000252302 uc062qbp.1 NG_033611 +HGNC:43048 RNA5SP148 RNA, 5S ribosomal pseudogene 148 pseudogene pseudogene Approved 3q26.32 03q26.32 RN5S148 RNA, 5S ribosomal 148 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873415 ENSG00000252336 uc062qdi.1 NG_033613 +HGNC:43049 RNA5SP149 RNA, 5S ribosomal pseudogene 149 pseudogene pseudogene Approved 3q26.33 03q26.33 RN5S149 RNA, 5S ribosomal 149 2011-10-07 2012-08-09 2012-08-09 2014-11-19 106480437 ENSG00000201822 uc062qgt.1 NG_043353 +HGNC:43050 RNA5SP150 RNA, 5S ribosomal pseudogene 150 pseudogene pseudogene Approved 3q26.33 03q26.33 RN5S150 RNA, 5S ribosomal 150 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873416 ENSG00000199839 uc062qkv.1 NG_033615 +HGNC:43051 RNA5SP151 RNA, 5S ribosomal pseudogene 151 pseudogene pseudogene Approved 3q27.1 03q27.1 RN5S151 RNA, 5S ribosomal 151 2011-10-07 2012-08-09 2012-08-09 2014-11-19 100873417 ENSG00000202502 uc062qod.1 NG_033617 +HGNC:43052 RNA5SP152 RNA, 5S ribosomal pseudogene 152 pseudogene pseudogene Approved 4p16.1 04p16.1 RN5S152 RNA, 5S ribosomal 152 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873418 ENSG00000202054 uc062vbm.1 NG_033619 +HGNC:43053 RNA5SP153 RNA, 5S ribosomal pseudogene 153 pseudogene pseudogene Approved 4p16.1 04p16.1 RN5S153 RNA, 5S ribosomal 153 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873419 ENSG00000252307 uc062vde.1 NG_033621 +HGNC:43054 RNA5SP154 RNA, 5S ribosomal pseudogene 154 pseudogene pseudogene Approved 4p16.1 04p16.1 RN5S154 RNA, 5S ribosomal 154 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873420 ENSG00000252002 uc062vdj.1 NG_033623 +HGNC:43055 RNA5SP155 RNA, 5S ribosomal pseudogene 155 pseudogene pseudogene Approved 4p16.1 04p16.1 RN5S155 RNA, 5S ribosomal 155 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873421 ENSG00000223086 uc021xlz.1 NG_033625 +HGNC:43056 RNA5SP156 RNA, 5S ribosomal pseudogene 156 pseudogene pseudogene Approved 4p15.33 04p15.33 RN5S156 RNA, 5S ribosomal 156 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873422 ENSG00000222182 uc062veu.1 NG_033627 +HGNC:43057 RNA5SP157 RNA, 5S ribosomal pseudogene 157 pseudogene pseudogene Approved 4p15.31 04p15.31 RN5S157 RNA, 5S ribosomal 157 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873423 ENSG00000251816 uc062vmg.1 NG_033629 +HGNC:43058 RNA5SP158 RNA, 5S ribosomal pseudogene 158 pseudogene pseudogene Approved 4p14 04p14 RN5S158 RNA, 5S ribosomal 158 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873424 ENSG00000222230 uc062vyd.1 NG_033631 +HGNC:43059 RNA5SP159 RNA, 5S ribosomal pseudogene 159 pseudogene pseudogene Approved 4p14 04p14 RN5S159 RNA, 5S ribosomal 159 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873425 ENSG00000252970 uc062wcf.1 NG_033633 +HGNC:43060 RNA5SP160 RNA, 5S ribosomal pseudogene 160 pseudogene pseudogene Approved 4p14 04p14 RN5S160 RNA, 5S ribosomal 160 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873426 ENSG00000201736 uc062weq.1 NG_033635 +HGNC:43061 RNA5SP161 RNA, 5S ribosomal pseudogene 161 pseudogene pseudogene Approved 4q12 04q12 RN5S161 RNA, 5S ribosomal 161 2011-10-10 2012-08-09 2012-08-09 2014-11-19 106480757 ENSG00000200741 uc032tjy.2 NG_043849 +HGNC:43062 RNA5SP162 RNA, 5S ribosomal pseudogene 162 pseudogene pseudogene Approved 4q12 04q12 RN5S162 RNA, 5S ribosomal 162 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873427 ENSG00000251823 uc031vqj.2 NG_033637 +HGNC:43063 RNA5SP163 RNA, 5S ribosomal pseudogene 163 pseudogene pseudogene Approved 4q13.3 04q13.3 RN5S163 RNA, 5S ribosomal 163 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873428 ENSG00000222236 uc062xep.1 NG_033639 +HGNC:43064 RNA5SP164 RNA, 5S ribosomal pseudogene 164 pseudogene pseudogene Approved 4q22.2 04q22.2 RN5S164 RNA, 5S ribosomal 164 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873429 ENSG00000252342 uc062ygh.1 NG_033641 +HGNC:43065 RNA5SP165 RNA, 5S ribosomal pseudogene 165 pseudogene pseudogene Approved 4q31.23 04q31.23 RN5S165 RNA, 5S ribosomal 165 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873430 ENSG00000252951 uc063acn.1 NG_033643 +HGNC:43066 RNA5SP166 RNA, 5S ribosomal pseudogene 166 pseudogene pseudogene Approved 4q31.23 04q31.23 RN5S166 RNA, 5S ribosomal 166 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873431 ENSG00000201846 uc021xsq.1 NG_033645 +HGNC:43067 RNA5SP167 RNA, 5S ribosomal pseudogene 167 pseudogene pseudogene Approved 4q31.23 04q31.23 RN5S167 RNA, 5S ribosomal 167 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873432 ENSG00000202331 uc063ado.1 NG_033647 +HGNC:43068 RNA5SP168 RNA, 5S ribosomal pseudogene 168 pseudogene pseudogene Approved 4q31.3 04q31.3 RN5S168 RNA, 5S ribosomal 168 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873433 ENSG00000252451 uc063aec.1 NG_033649 +HGNC:43069 RNA5SP169 RNA, 5S ribosomal pseudogene 169 pseudogene pseudogene Approved 4q31.3 04q31.3 RN5S169 RNA, 5S ribosomal 169 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873434 ENSG00000253077 uc063age.1 NG_033651 +HGNC:43070 RNA5SP170 RNA, 5S ribosomal pseudogene 170 pseudogene pseudogene Approved 4q32.3 04q32.3 RN5S170 RNA, 5S ribosomal 170 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873435 ENSG00000252959 uc063aue.1 NG_033653 +HGNC:43071 RNA5SP171 RNA, 5S ribosomal pseudogene 171 pseudogene pseudogene Approved 4q32.3 04q32.3 RN5S171 RNA, 5S ribosomal 171 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873436 ENSG00000212373 uc021xug.1 NG_033655 +HGNC:43072 RNA5SP172 RNA, 5S ribosomal pseudogene 172 pseudogene pseudogene Approved 4q34.3 04q34.3 RN5S172 RNA, 5S ribosomal 172 2011-10-10 2012-08-09 2012-08-09 2014-11-19 106478997 ENSG00000201931 uc063bee.1 NG_045128 +HGNC:43073 RNA5SP173 RNA, 5S ribosomal pseudogene 173 pseudogene pseudogene Approved 4q34.3 04q34.3 RN5S173 RNA, 5S ribosomal 173 2011-10-10 2012-08-09 2012-08-09 2014-11-19 100873437 ENSG00000201727 uc063bej.1 NG_033657 +HGNC:43074 RNA5SP174 RNA, 5S ribosomal pseudogene 174 pseudogene pseudogene Approved 4q35.2 04q35.2 RN5S174 RNA, 5S ribosomal 174 2011-10-10 2012-08-09 2012-08-09 2014-11-19 106478998 ENSG00000199572 uc063brh.1 NG_045132 +HGNC:43075 RNA5SP175 RNA, 5S ribosomal pseudogene 175 pseudogene pseudogene Approved 4q35.2 04q35.2 RN5S175 RNA, 5S ribosomal 175 2011-10-10 2012-08-09 2012-08-09 2014-11-19 106480758 ENSG00000201145 uc063bri.1 NG_045100 +HGNC:43076 RNA5SP176 RNA, 5S ribosomal pseudogene 176 pseudogene pseudogene Approved 5p15.31 05p15.31 RN5S176 RNA, 5S ribosomal 176 2011-10-13 2012-08-09 2012-08-09 2014-11-19 100873438 ENSG00000212258 uc063cdj.1 NG_033659 +HGNC:43077 RNA5SP177 RNA, 5S ribosomal pseudogene 177 pseudogene pseudogene Approved 5p15.31 05p15.31 RN5S177 RNA, 5S ribosomal 177 2011-10-13 2012-08-09 2012-08-09 2014-11-19 100873439 ENSG00000222054 uc021xwn.1 NG_033661 +HGNC:43078 RNA5SP178 RNA, 5S ribosomal pseudogene 178 pseudogene pseudogene Approved 5p15.1 05p15.1 RN5S178 RNA, 5S ribosomal 178 2011-10-13 2012-08-09 2012-08-09 2014-11-19 100873440 ENSG00000222312 uc063cmf.1 NG_033663 +HGNC:43079 RNA5SP179 RNA, 5S ribosomal pseudogene 179 pseudogene pseudogene Approved 5p15.1 05p15.1 RN5S179 RNA, 5S ribosomal 179 2011-10-13 2012-08-09 2012-08-09 2014-11-19 100873441 ENSG00000253093 uc063cnb.1 NG_033665 +HGNC:43080 RNA5SP180 RNA, 5S ribosomal pseudogene 180 pseudogene pseudogene Approved 5p15.1 05p15.1 RN5S180 RNA, 5S ribosomal 180 2011-10-13 2012-08-09 2012-08-09 2014-11-19 100873442 ENSG00000251990 uc063cng.1 NG_033667 +HGNC:43081 RNA5SP181 RNA, 5S ribosomal pseudogene 181 pseudogene pseudogene Approved 5p13.2 05p13.2 RN5S181 RNA, 5S ribosomal 181 2011-10-13 2012-08-09 2012-08-09 2014-11-19 100873443 ENSG00000222178 uc063czw.1 NG_033669 +HGNC:43082 RNA5SP182 RNA, 5S ribosomal pseudogene 182 pseudogene pseudogene Approved 5q11.2 05q11.2 RN5S182 RNA, 5S ribosomal 182 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873444 ENSG00000251873 uc063dmo.1 NG_033671 +HGNC:43083 RNA5SP183 RNA, 5S ribosomal pseudogene 183 pseudogene pseudogene Approved 5q11.2 05q11.2 RN5S183 RNA, 5S ribosomal 183 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873445 ENSG00000199322 uc063drs.1 NG_033673 +HGNC:43084 RNA5SP184 RNA, 5S ribosomal pseudogene 184 pseudogene pseudogene Approved 5q11.2 05q11.2 RN5S184 RNA, 5S ribosomal 184 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873446 ENSG00000223003 uc063dsq.1 NG_033675 +HGNC:43085 RNA5SP185 RNA, 5S ribosomal pseudogene 185 pseudogene pseudogene Approved 5q11.2 05q11.2 RN5S185 RNA, 5S ribosomal 185 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873447 ENSG00000212265 uc063dss.1 NG_033677 +HGNC:43086 RNA5SP186 RNA, 5S ribosomal pseudogene 186 pseudogene pseudogene Approved 5q13.3 05q13.3 RN5S186 RNA, 5S ribosomal 186 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873448 ENSG00000252833 uc063erh.1 NG_033679 +HGNC:43087 RNA5SP187 RNA, 5S ribosomal pseudogene 187 pseudogene pseudogene Approved 5q14.3 05q14.3 RN5S187 RNA, 5S ribosomal 187 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873449 ENSG00000207129 uc063fey.1 NG_033681 +HGNC:43088 RNA5SP188 RNA, 5S ribosomal pseudogene 188 pseudogene pseudogene Approved 5q21.1 05q21.1 RN5S188 RNA, 5S ribosomal 188 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873450 ENSG00000199786 uc063fsv.1 NG_033683 +HGNC:43089 RNA5SP189 RNA, 5S ribosomal pseudogene 189 pseudogene pseudogene Approved 5q21.3 05q21.3 RN5S189 RNA, 5S ribosomal 189 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873451 ENSG00000201790 uc063fvr.1 NG_033685 +HGNC:43090 RNA5SP190 RNA, 5S ribosomal pseudogene 190 pseudogene pseudogene Approved 5q23.1 05q23.1 RN5S190 RNA, 5S ribosomal 190 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873452 ENSG00000202092 uc063ghh.1 NG_033687 +HGNC:43091 RNA5SP191 RNA, 5S ribosomal pseudogene 191 pseudogene pseudogene Approved 5q23.3 05q23.3 RN5S191 RNA, 5S ribosomal 191 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873453 ENSG00000199455 uc063grc.1 NG_033689 +HGNC:43092 RNA5SP192 RNA, 5S ribosomal pseudogene 192 pseudogene pseudogene Approved 5q31.1 05q31.1 RN5S192 RNA, 5S ribosomal 192 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873454 ENSG00000201274 uc063gxf.1 NG_033691 +HGNC:43093 RNA5SP193 RNA, 5S ribosomal pseudogene 193 pseudogene pseudogene Approved 5q31.2 05q31.2 RN5S193 RNA, 5S ribosomal 193 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873455 ENSG00000222285 uc063hhb.1 NG_033693 +HGNC:43094 RNA5SP194 RNA, 5S ribosomal pseudogene 194 pseudogene pseudogene Approved 5q31.2 05q31.2 RN5S194 RNA, 5S ribosomal 194 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873456 ENSG00000201532 uc063hoe.1 NG_033695 +HGNC:43095 RNA5SP195 RNA, 5S ribosomal pseudogene 195 pseudogene pseudogene Approved 5q31.2 05q31.2 RN5S195 RNA, 5S ribosomal 195 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873457 ENSG00000199545 uc063hqb.1 NG_033697 +HGNC:43096 RNA5SP196 RNA, 5S ribosomal pseudogene 196 pseudogene pseudogene Approved 5q32 05q32 RN5S196 RNA, 5S ribosomal 196 2011-10-24 2012-08-09 2012-08-09 2015-01-30 100873458 ENSG00000252793 NG_033699 +HGNC:43097 RNA5SP197 RNA, 5S ribosomal pseudogene 197 pseudogene pseudogene Approved 5q33.1 05q33.1 RN5S197 RNA, 5S ribosomal 197 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873459 ENSG00000200227 uc063ivn.1 NG_033701 +HGNC:43098 RNA5SP198 RNA, 5S ribosomal pseudogene 198 pseudogene pseudogene Approved 5q33.1 05q33.1 RN5S198 RNA, 5S ribosomal 198 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873460 ENSG00000222308 uc063iwx.1 NG_033703 +HGNC:43099 RNA5SP199 RNA, 5S ribosomal pseudogene 199 pseudogene pseudogene Approved 5q33.2 05q33.2 RN5S199 RNA, 5S ribosomal 199 2011-10-24 2012-08-09 2012-08-09 2014-11-19 106480438 ENSG00000200275 uc063jbk.1 NG_043361 +HGNC:43100 RNA5SP200 RNA, 5S ribosomal pseudogene 200 pseudogene pseudogene Approved 5q35.1 05q35.1 RN5S200 RNA, 5S ribosomal 200 2011-10-24 2012-08-09 2012-08-09 2014-11-19 100873461 ENSG00000252169 uc063jtb.1 NG_033705 +HGNC:43101 RNA5SP201 RNA, 5S ribosomal pseudogene 201 pseudogene pseudogene Approved 6p25.2 06p25.2 RN5S201 RNA, 5S ribosomal 201 2011-11-01 2012-08-09 2012-08-09 2014-11-19 100873462 ENSG00000222248 uc063llw.1 NG_033707 +HGNC:43102 RNA5SP202 RNA, 5S ribosomal pseudogene 202 pseudogene pseudogene Approved 6p25.1 06p25.1 RN5S202 RNA, 5S ribosomal 202 2011-11-01 2012-08-09 2012-08-09 2014-11-19 100873463 ENSG00000201185 uc032wjm.2 NG_033709 +HGNC:43103 RNA5SP203 RNA, 5S ribosomal pseudogene 203 pseudogene pseudogene Approved 6p24.2 06p24.2 RN5S203 RNA, 5S ribosomal 203 2011-11-01 2012-08-09 2012-08-09 2014-11-19 100873464 ENSG00000222383 uc063lvi.1 NG_033711 +HGNC:43104 RNA5SP204 RNA, 5S ribosomal pseudogene 204 pseudogene pseudogene Approved 6p22.3 06p22.3 RN5S204 RNA, 5S ribosomal 204 2011-11-01 2012-08-09 2012-08-09 2014-11-19 100873465 ENSG00000201415 uc063mbf.1 NG_033713 +HGNC:43105 RNA5SP205 RNA, 5S ribosomal pseudogene 205 pseudogene pseudogene Approved 6p22.3 06p22.3 RN5S205 RNA, 5S ribosomal 205 2011-11-01 2012-08-09 2012-08-09 2014-11-19 100873466 ENSG00000201523 uc021ymh.1 NG_033715 +HGNC:43106 RNA5SP206 RNA, 5S ribosomal pseudogene 206 pseudogene pseudogene Approved 6p21.33 06p21.33 RN5S206 RNA, 5S ribosomal 206 2011-11-04 2012-08-09 2012-08-09 2014-11-19 106478999 ENSG00000252512 uc063noa.1 NG_045705 +HGNC:43107 RNA5SP207 RNA, 5S ribosomal pseudogene 207 pseudogene pseudogene Approved 6p21.1 06p21.1 RN5S207 RNA, 5S ribosomal 207 2011-11-04 2012-08-09 2012-08-09 2014-11-19 100873467 ENSG00000212176 uc063ojx.1 NG_033717 +HGNC:43108 RNA5SP208 RNA, 5S ribosomal pseudogene 208 pseudogene pseudogene Approved 6q12 06q12 RN5S208 RNA, 5S ribosomal 208 2011-11-04 2012-08-09 2012-08-09 2014-11-19 100873468 ENSG00000251965 uc063pjh.1 NG_033719 +HGNC:43109 RNA5SP209 RNA, 5S ribosomal pseudogene 209 pseudogene pseudogene Approved 6q14.1 06q14.1 RN5S209 RNA, 5S ribosomal 209 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873469 ENSG00000223169 uc063pri.1 NG_033720 +HGNC:43110 RNA5SP210 RNA, 5S ribosomal pseudogene 210 pseudogene pseudogene Approved 6q14.1 06q14.1 RN5S210 RNA, 5S ribosomal 210 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873470 ENSG00000212336 uc063ptf.1 NG_033722 +HGNC:43111 RNA5SP211 RNA, 5S ribosomal pseudogene 211 pseudogene pseudogene Approved 6q21 06q21 RN5S211 RNA, 5S ribosomal 211 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873471 ENSG00000202386 uc021zdo.1 NG_033724 +HGNC:43112 RNA5SP212 RNA, 5S ribosomal pseudogene 212 pseudogene pseudogene Approved 6q21 06q21 RN5S212 RNA, 5S ribosomal 212 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873472 ENSG00000212525 uc063qlp.1 NG_033280 +HGNC:43113 RNA5SP213 RNA, 5S ribosomal pseudogene 213 pseudogene pseudogene Approved 6q21 06q21 RN5S213 RNA, 5S ribosomal 213 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873473 ENSG00000212333 uc021zea.1 NG_033282 +HGNC:43114 RNA5SP214 RNA, 5S ribosomal pseudogene 214 pseudogene pseudogene Approved 6q22.1 06q22.1 RN5S214 RNA, 5S ribosomal 214 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873474 ENSG00000200248 uc063qyl.1 NG_033284 +HGNC:43115 RNA5SP215 RNA, 5S ribosomal pseudogene 215 pseudogene pseudogene Approved 6q22.31 06q22.31 RN5S215 RNA, 5S ribosomal 215 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873475 ENSG00000200310 uc063rah.1 NG_033286 +HGNC:43116 RNA5SP216 RNA, 5S ribosomal pseudogene 216 pseudogene pseudogene Approved 6q22.32 06q22.32 RN5S216 RNA, 5S ribosomal 216 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873476 ENSG00000251920 uc063rdv.1 NG_033288 +HGNC:43117 RNA5SP217 RNA, 5S ribosomal pseudogene 217 pseudogene pseudogene Approved 6q22.33 06q22.33 RN5S217 RNA, 5S ribosomal 217 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873477 ENSG00000251768 uc021zez.1 NG_033290 +HGNC:43118 RNA5SP218 RNA, 5S ribosomal pseudogene 218 pseudogene pseudogene Approved 6q23.2 06q23.2 RN5S218 RNA, 5S ribosomal 218 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873478 ENSG00000200058 uc063roe.1 NG_033292 +HGNC:43119 RNA5SP219 RNA, 5S ribosomal pseudogene 219 pseudogene pseudogene Approved 6q23.3 06q23.3 RN5S219 RNA, 5S ribosomal 219 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873479 ENSG00000212242 uc063rtj.1 NG_033294 +HGNC:43120 RNA5SP220 RNA, 5S ribosomal pseudogene 220 pseudogene pseudogene Approved 6q24.1 06q24.1 RN5S220 RNA, 5S ribosomal 220 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873480 ENSG00000252107 uc021zgc.1 NG_033296 +HGNC:43121 RNA5SP221 RNA, 5S ribosomal pseudogene 221 pseudogene pseudogene Approved 6q24.2 06q24.2 RN5S221 RNA, 5S ribosomal 221 2011-11-16 2012-08-09 2012-08-09 2014-11-19 106480759 ENSG00000223203 uc063rzb.1 NG_045611 +HGNC:43122 RNA5SP222 RNA, 5S ribosomal pseudogene 222 pseudogene pseudogene Approved 6q24.3 06q24.3 RN5S222 RNA, 5S ribosomal 222 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873481 ENSG00000222971 uc063sby.1 NG_033298 +HGNC:43123 RNA5SP223 RNA, 5S ribosomal pseudogene 223 pseudogene pseudogene Approved 6q25.2 06q25.2 RN5S223 RNA, 5S ribosomal 223 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873482 ENSG00000202044 uc063siq.1 NG_033300 +HGNC:43124 RNA5SP224 RNA, 5S ribosomal pseudogene 224 pseudogene pseudogene Approved 6q25.2 06q25.2 RN5S224 RNA, 5S ribosomal 224 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873483 ENSG00000201939 uc063sjr.1 NG_033302 +HGNC:43125 RNA5SP225 RNA, 5S ribosomal pseudogene 225 pseudogene pseudogene Approved 6q25.2 06q25.2 RN5S225 RNA, 5S ribosomal 225 2011-11-16 2012-08-09 2012-08-09 2014-11-19 100873484 ENSG00000222806 uc032xpp.2 NG_033304 +HGNC:43126 RNA5SP226 RNA, 5S ribosomal pseudogene 226 pseudogene pseudogene Approved 6q27 06q27 RN5S226 RNA, 5S ribosomal 226 2011-11-16 2012-08-09 2012-08-09 2014-11-19 106479000 ENSG00000199523 uc032xsm.2 NG_044106 +HGNC:43127 RNA5SP227 RNA, 5S ribosomal pseudogene 227 pseudogene pseudogene Approved 7p15.3 07p15.3 RN5S227 RNA, 5S ribosomal 227 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873485 ENSG00000251993 uc064bxi.1 NG_033305 +HGNC:43128 RNA5SP228 RNA, 5S ribosomal pseudogene 228 pseudogene pseudogene Approved 7p15.3 07p15.3 RN5S228 RNA, 5S ribosomal 228 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873486 ENSG00000252041 uc064cbw.1 NG_033306 +HGNC:43129 RNA5SP229 RNA, 5S ribosomal pseudogene 229 pseudogene pseudogene Approved 7p14.3 07p14.3 RN5S229 RNA, 5S ribosomal 229 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873487 ENSG00000222741 uc064csc.1 NG_033307 +HGNC:43130 RNA5SP230 RNA, 5S ribosomal pseudogene 230 pseudogene pseudogene Approved 7p13 07p13 RN5S230 RNA, 5S ribosomal 230 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873488 ENSG00000252848 uc064dgl.1 NG_033308 +HGNC:43131 RNA5SP231 RNA, 5S ribosomal pseudogene 231 pseudogene pseudogene Approved 7q11.22 07q11.22 RN5S231 RNA, 5S ribosomal 231 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873489 ENSG00000222428 uc064ebw.1 NG_033309 +HGNC:43132 RNA5SP232 RNA, 5S ribosomal pseudogene 232 pseudogene pseudogene Approved 7q11.22 07q11.22 RN5S232 RNA, 5S ribosomal 232 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873490 ENSG00000201014 uc064edg.1 NG_033310 +HGNC:43133 RNA5SP233 RNA, 5S ribosomal pseudogene 233 pseudogene pseudogene Approved 7q11.23 07q11.23 RN5S233 RNA, 5S ribosomal 233 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873491 ENSG00000238391 uc064ejs.1 NG_033311 +HGNC:43134 RNA5SP234 RNA, 5S ribosomal pseudogene 234 pseudogene pseudogene Approved 7q21.11 07q21.11 RN5S234 RNA, 5S ribosomal 234 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873492 ENSG00000200786 uc064eua.1 NG_033312 +HGNC:43135 RNA5SP235 RNA, 5S ribosomal pseudogene 235 pseudogene pseudogene Approved 7q21.11 07q21.11 RN5S235 RNA, 5S ribosomal 235 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873493 ENSG00000202281 uc064exh.1 NG_033313 +HGNC:43136 RNA5SP236 RNA, 5S ribosomal pseudogene 236 pseudogene pseudogene Approved 7q22.3 07q22.3 RN5S236 RNA, 5S ribosomal 236 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873494 ENSG00000251978 uc064gwk.1 NG_033314 +HGNC:43137 RNA5SP237 RNA, 5S ribosomal pseudogene 237 pseudogene pseudogene Approved 7q31.1 07q31.1 RN5S237 RNA, 5S ribosomal 237 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873495 ENSG00000222346 uc064hde.1 NG_033315 +HGNC:43138 RNA5SP238 RNA, 5S ribosomal pseudogene 238 pseudogene pseudogene Approved 7q31.1 07q31.1 RN5S238 RNA, 5S ribosomal 238 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873496 ENSG00000202334 uc064hfj.1 NG_033316 +HGNC:43139 RNA5SP239 RNA, 5S ribosomal pseudogene 239 pseudogene pseudogene Approved 7q31.2 07q31.2 RN5S239 RNA, 5S ribosomal 239 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873497 ENSG00000222150 uc022akm.1 NG_033317 +HGNC:43140 RNA5SP240 RNA, 5S ribosomal pseudogene 240 pseudogene pseudogene Approved 7q31.31 07q31.31 RN5S240 RNA, 5S ribosomal 240 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873498 ENSG00000202225 uc064hmd.1 NG_033318 +HGNC:43141 RNA5SP241 RNA, 5S ribosomal pseudogene 241 pseudogene pseudogene Approved 7q31.31 07q31.31 RN5S241 RNA, 5S ribosomal 241 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873499 ENSG00000212628 uc064hmk.1 NG_033319 +HGNC:43142 RNA5SP242 RNA, 5S ribosomal pseudogene 242 pseudogene pseudogene Approved 7q32.1 07q32.1 RN5S242 RNA, 5S ribosomal 242 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873500 ENSG00000201041 uc064hux.1 NG_033320 +HGNC:43143 RNA5SP243 RNA, 5S ribosomal pseudogene 243 pseudogene pseudogene Approved 7q32.1 07q32.1 RN5S243 RNA, 5S ribosomal 243 2011-11-30 2012-08-09 2012-08-09 2014-11-19 106479001 ENSG00000252866 uc064huy.1 NG_044113 +HGNC:43144 RNA5SP244 RNA, 5S ribosomal pseudogene 244 pseudogene pseudogene Approved 7q32.2 07q32.2 RN5S244 RNA, 5S ribosomal 244 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100885864 ENSG00000212238 uc064hxo.1 NR_048572 +HGNC:43145 RNA5SP245 RNA, 5S ribosomal pseudogene 245 pseudogene pseudogene Approved 7q32.2 07q32.2 RN5S245 RNA, 5S ribosomal 245 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873501 ENSG00000201109 uc064hye.1 NG_033321 +HGNC:43146 RNA5SP246 RNA, 5S ribosomal pseudogene 246 pseudogene pseudogene Approved 7q32.2 07q32.2 RN5S246 RNA, 5S ribosomal 246 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873502 ENSG00000239021 uc064ibd.1 NG_033322 +HGNC:43147 RNA5SP247 RNA, 5S ribosomal pseudogene 247 pseudogene pseudogene Approved 7q34 07q34 RN5S247 RNA, 5S ribosomal 247 2011-11-30 2012-08-09 2012-08-09 2014-11-18 100873503 ENSG00000223113 uc022amt.1 NG_033323 +HGNC:43148 RNA5SP248 RNA, 5S ribosomal pseudogene 248 pseudogene pseudogene Approved 7q34 07q34 RN5S248 RNA, 5S ribosomal 248 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873504 ENSG00000202472 uc033ajf.2 NG_033324 +HGNC:43149 RNA5SP249 RNA, 5S ribosomal pseudogene 249 pseudogene pseudogene Approved 7q35 07q35 RN5S249 RNA, 5S ribosomal 249 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873505 ENSG00000251936 uc022aor.1 NG_033325 +HGNC:43150 RNA5SP250 RNA, 5S ribosomal pseudogene 250 pseudogene pseudogene Approved 7q36.1 07q36.1 RN5S250 RNA, 5S ribosomal 250 2011-11-30 2012-08-09 2012-08-09 2014-11-19 100873506 ENSG00000199404 uc064jmy.1 NG_033326 +HGNC:43151 RNA5SP251 RNA, 5S ribosomal pseudogene 251 pseudogene pseudogene Approved 8p23.2 08p23.2 RN5S251 RNA, 5S ribosomal 251 2011-12-06 2012-08-09 2012-08-09 2014-11-19 100873507 ENSG00000222546 uc064kac.1 NG_033327 +HGNC:43152 RNA5SP252 RNA, 5S ribosomal pseudogene 252 pseudogene pseudogene Approved 8p23.1 08p23.1 RN5S252 RNA, 5S ribosomal 252 2011-12-06 2012-08-09 2012-08-09 2014-11-19 100873508 ENSG00000212433 uc064key.1 NG_033328 +HGNC:43153 RNA5SP253 RNA, 5S ribosomal pseudogene 253 pseudogene pseudogene Approved 8p23.1 08p23.1 RN5S253 RNA, 5S ribosomal 253 2011-12-06 2012-08-09 2012-08-09 2014-11-19 106480760 ENSG00000252029 uc064kip.1 NG_043867 +HGNC:43154 RNA5SP254 RNA, 5S ribosomal pseudogene 254 pseudogene pseudogene Approved 8p23.1 08p23.1 RN5S254 RNA, 5S ribosomal 254 2011-12-06 2012-08-09 2012-08-09 2014-11-19 106481793 ENSG00000252535 uc064kjm.1 NG_043930 +HGNC:43155 RNA5SP255 RNA, 5S ribosomal pseudogene 255 pseudogene pseudogene Approved 8p22 08p22 RN5S255 RNA, 5S ribosomal 255 2011-12-06 2012-08-09 2012-08-09 2014-11-19 100873509 ENSG00000252179 uc064kkx.1 NG_033329 +HGNC:43156 RNA5SP256 RNA, 5S ribosomal pseudogene 256 pseudogene pseudogene Approved 8p22 08p22 RN5S256 RNA, 5S ribosomal 256 2011-12-06 2012-08-09 2012-08-09 2014-11-19 100873510 ENSG00000212280 uc064kov.1 NG_033330 +HGNC:43157 RNA5SP257 RNA, 5S ribosomal pseudogene 257 pseudogene pseudogene Approved 8p21.3 08p21.3 RN5S257 RNA, 5S ribosomal 257 2011-12-06 2012-08-09 2012-08-09 2015-01-30 100873511 ENSG00000274467 uc064kuh.1 NG_033331 +HGNC:43158 RNA5SP258 RNA, 5S ribosomal pseudogene 258 pseudogene pseudogene Approved 8p21.2 08p21.2 RN5S258 RNA, 5S ribosomal 258 2011-12-06 2012-08-09 2012-08-09 2014-11-19 100873512 ENSG00000199620 uc064lik.1 NG_033332 +HGNC:43159 RNA5SP259 RNA, 5S ribosomal pseudogene 259 pseudogene pseudogene Approved 8p21.1 08p21.1 RN5S259 RNA, 5S ribosomal 259 2011-12-06 2012-08-09 2012-08-09 2014-11-18 100873513 ENSG00000202411 uc033bfx.2 NG_033333 +HGNC:43160 RNA5SP260 RNA, 5S ribosomal pseudogene 260 pseudogene pseudogene Approved 8p12 08p12 RN5S260 RNA, 5S ribosomal 260 2011-12-06 2012-08-09 2012-08-09 2014-11-19 100873514 ENSG00000200719 uc022atj.1 NG_033334 +HGNC:43161 RNA5SP261 RNA, 5S ribosomal pseudogene 261 pseudogene pseudogene Approved 8p12 08p12 RN5S261 RNA, 5S ribosomal 261 2011-12-06 2012-08-09 2012-08-09 2014-11-19 100873515 ENSG00000222468 uc064lui.1 NG_033335 +HGNC:43162 RNA5SP262 RNA, 5S ribosomal pseudogene 262 pseudogene pseudogene Approved 8p12 08p12 RN5S262 RNA, 5S ribosomal 262 2011-12-06 2012-08-09 2012-08-09 2014-11-19 100873516 ENSG00000252261 uc022att.1 NG_033336 +HGNC:43163 RNA5SP263 RNA, 5S ribosomal pseudogene 263 pseudogene pseudogene Approved 8p12 08p12 RN5S263 RNA, 5S ribosomal 263 2011-12-12 2012-08-09 2012-08-09 2014-11-19 106479002 ENSG00000200246 uc064lut.1 NG_045716 +HGNC:43164 RNA5SP264 RNA, 5S ribosomal pseudogene 264 pseudogene pseudogene Approved 8p11.23 08p11.23 RN5S264 RNA, 5S ribosomal 264 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873517 ENSG00000199985 uc064lwu.1 NG_033337 +HGNC:43165 RNA5SP265 RNA, 5S ribosomal pseudogene 265 pseudogene pseudogene Approved 8q12.1 08q12.1 RN5S265 RNA, 5S ribosomal 265 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873518 ENSG00000222955 uc064mxo.1 NG_033338 +HGNC:43166 RNA5SP266 RNA, 5S ribosomal pseudogene 266 pseudogene pseudogene Approved 8q12.1 08q12.1 RN5S266 RNA, 5S ribosomal 266 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873519 ENSG00000222205 uc064mzy.1 NG_033339 +HGNC:43167 RNA5SP267 RNA, 5S ribosomal pseudogene 267 pseudogene pseudogene Approved 8q12.1 08q12.1 RN5S267 RNA, 5S ribosomal 267 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873520 ENSG00000201763 uc064ncg.1 NG_033340 +HGNC:43168 RNA5SP268 RNA, 5S ribosomal pseudogene 268 pseudogene pseudogene Approved 8q13.2 08q13.2 RN5S268 RNA, 5S ribosomal 268 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873521 ENSG00000252637 uc064nlz.1 NG_033341 +HGNC:43169 RNA5SP269 RNA, 5S ribosomal pseudogene 269 pseudogene pseudogene Approved 8q13.2 08q13.2 RN5S269 RNA, 5S ribosomal 269 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873522 ENSG00000239184 uc022avo.1 NG_033342 +HGNC:43170 RNA5SP270 RNA, 5S ribosomal pseudogene 270 pseudogene pseudogene Approved 8q13.3 08q13.3 RN5S270 RNA, 5S ribosomal 270 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873523 ENSG00000223293 uc064noj.1 NG_033343 +HGNC:43171 RNA5SP271 RNA, 5S ribosomal pseudogene 271 pseudogene pseudogene Approved 8q13.3 08q13.3 RN5S271 RNA, 5S ribosomal 271 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873524 ENSG00000252509 uc064nqv.1 NG_033344 +HGNC:43172 RNA5SP272 RNA, 5S ribosomal pseudogene 272 pseudogene pseudogene Approved 8q21.3 08q21.3 RN5S272 RNA, 5S ribosomal 272 2011-12-12 2012-08-09 2012-08-09 2014-11-19 100873525 ENSG00000251904 uc064ogy.1 NG_033345 +HGNC:43173 RNA5SP273 RNA, 5S ribosomal pseudogene 273 pseudogene pseudogene Approved 8q21.3 08q21.3 RN5S273 RNA, 5S ribosomal 273 2011-12-13 2012-08-09 2012-08-09 2014-11-19 100873526 ENSG00000199354 uc064oje.1 NG_033346 +HGNC:43174 RNA5SP274 RNA, 5S ribosomal pseudogene 274 pseudogene pseudogene Approved 8q22.1 08q22.1 RN5S274 RNA, 5S ribosomal 274 2011-12-13 2012-08-09 2012-08-09 2014-11-19 100873527 ENSG00000222416 uc064ono.1 NG_033347 +HGNC:43175 RNA5SP275 RNA, 5S ribosomal pseudogene 275 pseudogene pseudogene Approved 8q23.1 08q23.1 RN5S275 RNA, 5S ribosomal 275 2011-12-13 2012-08-09 2012-08-09 2014-11-19 100873528 ENSG00000200806 uc064pmd.1 NG_033348 +HGNC:43176 RNA5SP276 RNA, 5S ribosomal pseudogene 276 pseudogene pseudogene Approved 8q23.3 08q23.3 RN5S276 RNA, 5S ribosomal 276 2011-12-13 2012-08-09 2012-08-09 2014-11-19 100873529 ENSG00000199450 uc064pqx.1 NG_033350 +HGNC:43177 RNA5SP277 RNA, 5S ribosomal pseudogene 277 pseudogene pseudogene Approved 8q24.12 08q24.12 RN5S277 RNA, 5S ribosomal 277 2011-12-13 2012-08-09 2012-08-09 2014-11-19 100873530 ENSG00000202356 uc064puk.1 NG_033352 +HGNC:43178 RNA5SP278 RNA, 5S ribosomal pseudogene 278 pseudogene pseudogene Approved 8q24.3 08q24.3 RN5S278 RNA, 5S ribosomal 278 2011-12-13 2012-08-09 2012-08-09 2014-11-19 100873531 ENSG00000252864 uc064qsq.1 NG_033354 +HGNC:43179 RNA5SP279 RNA, 5S ribosomal pseudogene 279 pseudogene pseudogene Approved 9p24.3 09p24.3 RN5S279 RNA, 5S ribosomal 279 2011-12-13 2012-08-09 2012-08-09 2014-11-19 100873532 ENSG00000202383 uc064rvz.1 NG_033356 +HGNC:43180 RNA5SP280 RNA, 5S ribosomal pseudogene 280 pseudogene pseudogene Approved 9p21.2 09p21.2 RN5S280 RNA, 5S ribosomal 280 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873533 ENSG00000223162 uc022bex.1 NG_033358 +HGNC:43181 RNA5SP281 RNA, 5S ribosomal pseudogene 281 pseudogene pseudogene Approved 9p21.1 09p21.1 RN5S281 RNA, 5S ribosomal 281 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873534 ENSG00000252313 uc064smy.1 NG_033360 +HGNC:43182 RNA5SP282 RNA, 5S ribosomal pseudogene 282 pseudogene pseudogene Approved 9p13.3 09p13.3 RN5S282 RNA, 5S ribosomal 282 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873535 ENSG00000252164 uc064srp.1 NG_033362 +HGNC:43183 RNA5SP283 RNA, 5S ribosomal pseudogene 283 pseudogene pseudogene Approved 9q13 09q13 RN5S283 RNA, 5S ribosomal 283 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873536 ENSG00000202474 uc064tkd.1 NG_033364 +HGNC:43184 RNA5SP284 RNA, 5S ribosomal pseudogene 284 pseudogene pseudogene Approved 9q13 09q13 RN5S284 RNA, 5S ribosomal 284 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873537 ENSG00000207277 uc064tku.1 NG_033366 +HGNC:43185 RNA5SP285 RNA, 5S ribosomal pseudogene 285 pseudogene pseudogene Approved 9q21.13 09q21.13 RN5S285 RNA, 5S ribosomal 285 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873538 ENSG00000252428 uc022bia.1 NG_033368 +HGNC:43186 RNA5SP286 RNA, 5S ribosomal pseudogene 286 pseudogene pseudogene Approved 9q21.13 09q21.13 RN5S286 RNA, 5S ribosomal 286 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873539 ENSG00000212454 uc064ttm.1 NG_033370 +HGNC:43187 RNA5SP287 RNA, 5S ribosomal pseudogene 287 pseudogene pseudogene Approved 9q21.32 09q21.32 RN5S287 RNA, 5S ribosomal 287 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873540 ENSG00000252167 uc064txq.1 NG_033372 +HGNC:43188 RNA5SP288 RNA, 5S ribosomal pseudogene 288 pseudogene pseudogene Approved 9q22.32 09q22.32 RN5S288 RNA, 5S ribosomal 288 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873541 ENSG00000251884 uc064umf.1 NG_033374 +HGNC:43189 RNA5SP289 RNA, 5S ribosomal pseudogene 289 pseudogene pseudogene Approved 9q22.32 09q22.32 RN5S289 RNA, 5S ribosomal 289 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873542 ENSG00000199202 uc064unp.1 NG_033376 +HGNC:43190 RNA5SP290 RNA, 5S ribosomal pseudogene 290 pseudogene pseudogene Approved 9q22.33 09q22.33 RN5S290 RNA, 5S ribosomal 290 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873543 ENSG00000252942 uc022bkv.1 NG_033378 +HGNC:43191 RNA5SP291 RNA, 5S ribosomal pseudogene 291 pseudogene pseudogene Approved 9q31.1 09q31.1 RN5S291 RNA, 5S ribosomal 291 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873544 ENSG00000253031 uc064uwg.1 NG_033380 +HGNC:43192 RNA5SP292 RNA, 5S ribosomal pseudogene 292 pseudogene pseudogene Approved 9q31.2 09q31.2 RN5S292 RNA, 5S ribosomal 292 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873545 ENSG00000212276 uc064uxt.1 NG_033382 +HGNC:43193 RNA5SP293 RNA, 5S ribosomal pseudogene 293 pseudogene pseudogene Approved 9q31.2 09q31.2 RN5S293 RNA, 5S ribosomal 293 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873546 ENSG00000222459 uc022bll.1 NG_033384 +HGNC:43194 RNA5SP294 RNA, 5S ribosomal pseudogene 294 pseudogene pseudogene Approved 9q31.3 09q31.3 RN5S294 RNA, 5S ribosomal 294 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873547 ENSG00000223238 uc022blx.1 NG_033386 +HGNC:43195 RNA5SP295 RNA, 5S ribosomal pseudogene 295 pseudogene pseudogene Approved 9q32 09q32 RN5S295 RNA, 5S ribosomal 295 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873548 ENSG00000199525 uc064vcc.1 NG_033388 +HGNC:43196 RNA5SP296 RNA, 5S ribosomal pseudogene 296 pseudogene pseudogene Approved 9q34.11 09q34.11 RN5S296 RNA, 5S ribosomal 296 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873549 ENSG00000222455 uc022bnt.1 NG_033390 +HGNC:43197 RNA5SP297 RNA, 5S ribosomal pseudogene 297 pseudogene pseudogene Approved 10p15.3 10p15.3 RN5S297 RNA, 5S ribosomal 297 2012-01-16 2012-08-09 2012-08-09 2014-11-19 106479003 ENSG00000212331 uc057rdl.1 NG_044127 +HGNC:43198 RNA5SP298 RNA, 5S ribosomal pseudogene 298 pseudogene pseudogene Approved 10p15.3 10p15.3 RN5S298 RNA, 5S ribosomal 298 2012-01-16 2012-08-09 2012-08-09 2014-11-18 106480761 ENSG00000201861 uc021pmi.3 NG_045615 +HGNC:43199 RNA5SP299 RNA, 5S ribosomal pseudogene 299 pseudogene pseudogene Approved 10p14 10p14 RN5S299 RNA, 5S ribosomal 299 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873574 ENSG00000212505 uc057rpp.1 NG_033440 +HGNC:43200 RNA5SP300 RNA, 5S ribosomal pseudogene 300 pseudogene pseudogene Approved 10p13 10p13 RN5S300 RNA, 5S ribosomal 300 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873575 ENSG00000212499 uc021pnb.1 NG_033442 +HGNC:43201 RNA5SP301 RNA, 5S ribosomal pseudogene 301 pseudogene pseudogene Approved 10p13 10p13 RN5S301 RNA, 5S ribosomal 301 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873576 ENSG00000199407 uc057rxd.1 NG_033444 +HGNC:43202 RNA5SP302 RNA, 5S ribosomal pseudogene 302 pseudogene pseudogene Approved 10p13 10p13 RN5S302 RNA, 5S ribosomal 302 2012-01-16 2012-08-09 2012-08-09 2014-11-19 106479004 ENSG00000201766 uc057ryf.1 NG_045723 +HGNC:43203 RNA5SP303 RNA, 5S ribosomal pseudogene 303 pseudogene pseudogene Approved 10p12.31 10p12.31 RN5S303 RNA, 5S ribosomal 303 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873577 ENSG00000252001 uc057scy.1 NG_033447 +HGNC:43204 RNA5SP304 RNA, 5S ribosomal pseudogene 304 pseudogene pseudogene Approved 10p12.2 10p12.2 RN5S304 RNA, 5S ribosomal 304 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873578 ENSG00000223131 uc057sgo.1 NG_033449 +HGNC:43205 RNA5SP305 RNA, 5S ribosomal pseudogene 305 pseudogene pseudogene Approved 10p12.1 10p12.1 RN5S305 RNA, 5S ribosomal 305 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873579 ENSG00000199535 uc057shr.1 NG_033451 +HGNC:43206 RNA5SP306 RNA, 5S ribosomal pseudogene 306 pseudogene pseudogene Approved 10p12.1 10p12.1 RN5S306 RNA, 5S ribosomal 306 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873580 ENSG00000223019 uc057sif.1 NG_033453 +HGNC:43207 RNA5SP307 RNA, 5S ribosomal pseudogene 307 pseudogene pseudogene Approved 10p12.1 10p12.1 RN5S307 RNA, 5S ribosomal 307 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873581 ENSG00000199733 uc057sin.1 NG_033455 +HGNC:43208 RNA5SP308 RNA, 5S ribosomal pseudogene 308 pseudogene pseudogene Approved 10p12.1 10p12.1 RN5S308 RNA, 5S ribosomal 308 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873582 ENSG00000199402 uc057smi.1 NG_033457 +HGNC:43209 RNA5SP309 RNA, 5S ribosomal pseudogene 309 pseudogene pseudogene Approved 10p11.22 10p11.22 RN5S309 RNA, 5S ribosomal 309 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873583 ENSG00000252479 uc021pou.1 NG_033459 +HGNC:43210 RNA5SP310 RNA, 5S ribosomal pseudogene 310 pseudogene pseudogene Approved 10q11.22 10q11.22 "RN5S310|RNA5SP316|RN5S316" "RNA, 5S ribosomal 310|RNA, 5S ribosomal pseudogene 316|RNA, 5S ribosomal 316" 2012-01-16 2012-08-09 2012-08-09 2015-02-04 106480762 ENSG00000239152 uc057szt.1 NG_045617 +HGNC:43211 RNA5SP311 RNA, 5S ribosomal pseudogene 311 pseudogene pseudogene Approved 10q11.22 10q11.22 "RN5S311|RNA5SP314|RN5S314" "RNA, 5S ribosomal 311|RNA, 5S ribosomal pseudogene 314|RNA, 5S ribosomal 314" 2012-01-16 2012-08-09 2012-08-09 2015-02-04 106480358 ENSG00000238405 uc057tbb.1 NG_044729 +HGNC:43212 RNA5SP312 RNA, 5S ribosomal pseudogene 312 pseudogene pseudogene Approved 10q11.22 10q11.22 "RN5S312|RNA5SP313|RN5S313" "RNA, 5S ribosomal 312|RNA, 5S ribosomal pseudogene 313|RNA, 5S ribosomal 313" 2012-01-16 2012-08-09 2012-08-09 2015-02-04 106480439 ENSG00000252877 uc057tbw.1 NG_045421 +HGNC:43215 RNA5SP315 RNA, 5S ribosomal pseudogene 315 pseudogene pseudogene Approved 10q11.22 10q11.22 RN5S315 RNA, 5S ribosomal 315 2012-01-16 2012-08-09 2012-08-09 2014-11-19 106479005 ENSG00000252149 uc057tch.1 NG_044142 +HGNC:43217 RNA5SP317 RNA, 5S ribosomal pseudogene 317 pseudogene pseudogene Approved 10q11.23 10q11.23 RN5S317 RNA, 5S ribosomal 317 2012-01-16 2012-08-09 2012-08-09 2014-11-19 106479006 ENSG00000222108 uc057tfp.1 NG_045731 +HGNC:43218 RNA5SP318 RNA, 5S ribosomal pseudogene 318 pseudogene pseudogene Approved 10q21.1 10q21.1 RN5S318 RNA, 5S ribosomal 318 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873584 ENSG00000252161 uc057tht.1 NG_033461 +HGNC:43219 RNA5SP319 RNA, 5S ribosomal pseudogene 319 pseudogene pseudogene Approved 10q21.3 10q21.3 RN5S319 RNA, 5S ribosomal 319 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873585 ENSG00000199638 uc057trd.1 NG_033463 +HGNC:43220 RNA5SP320 RNA, 5S ribosomal pseudogene 320 pseudogene pseudogene Approved 10q22.2 10q22.2 RN5S320 RNA, 5S ribosomal 320 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873586 ENSG00000252072 uc057ucs.1 NG_033465 +HGNC:43221 RNA5SP321 RNA, 5S ribosomal pseudogene 321 pseudogene pseudogene Approved 10q22.3 10q22.3 RN5S321 RNA, 5S ribosomal 321 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873587 ENSG00000199592 uc021ptv.1 NG_033467 +HGNC:43222 RNA5SP322 RNA, 5S ribosomal pseudogene 322 pseudogene pseudogene Approved 10q23.1 10q23.1 RN5S322 RNA, 5S ribosomal 322 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873588 ENSG00000200487 uc057upv.1 NG_033468 +HGNC:43223 RNA5SP323 RNA, 5S ribosomal pseudogene 323 pseudogene pseudogene Approved 10q23.33 10q23.33 RN5S323 RNA, 5S ribosomal 323 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873589 ENSG00000212396 uc057uxc.1 NG_033469 +HGNC:43224 RNA5SP324 RNA, 5S ribosomal pseudogene 324 pseudogene pseudogene Approved 10q24.1 10q24.1 RN5S324 RNA, 5S ribosomal 324 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873590 ENSG00000202047 uc021pwo.1 NG_033471 +HGNC:43225 RNA5SP325 RNA, 5S ribosomal pseudogene 325 pseudogene pseudogene Approved 10q25.1 10q25.1 RN5S325 RNA, 5S ribosomal 325 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873591 ENSG00000200626 uc021pxx.1 NG_033473 +HGNC:43226 RNA5SP326 RNA, 5S ribosomal pseudogene 326 pseudogene pseudogene Approved 10q25.1 10q25.1 RN5S326 RNA, 5S ribosomal 326 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873592 ENSG00000200079 uc057vvl.1 NG_033475 +HGNC:43227 RNA5SP327 RNA, 5S ribosomal pseudogene 327 pseudogene pseudogene Approved 10q25.2 10q25.2 RN5S327 RNA, 5S ribosomal 327 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873593 ENSG00000199364 uc057vyw.1 NG_033476 +HGNC:43228 RNA5SP328 RNA, 5S ribosomal pseudogene 328 pseudogene pseudogene Approved 10q26.2 10q26.2 RN5S328 RNA, 5S ribosomal 328 2012-01-16 2012-08-09 2012-08-09 2014-11-19 100873594 ENSG00000222740 uc057wto.1 NG_033477 +HGNC:43229 RNA5SP329 RNA, 5S ribosomal pseudogene 329 pseudogene pseudogene Approved 11p15.4 11p15.4 RN5S329 RNA, 5S ribosomal 329 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873595 ENSG00000202147 uc057yix.1 NG_033478 +HGNC:43230 RNA5SP330 RNA, 5S ribosomal pseudogene 330 pseudogene pseudogene Approved 11p15.4 11p15.4 RN5S330 RNA, 5S ribosomal 330 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873596 ENSG00000252905 uc021qdg.1 NG_033479 +HGNC:43231 RNA5SP331 RNA, 5S ribosomal pseudogene 331 pseudogene pseudogene Approved 11p15.2 11p15.2 RN5S331 RNA, 5S ribosomal 331 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873597 ENSG00000201856 uc057zhl.1 NG_033480 +HGNC:43232 RNA5SP332 RNA, 5S ribosomal pseudogene 332 pseudogene pseudogene Approved 11p15.2 11p15.2 RN5S332 RNA, 5S ribosomal 332 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873598 ENSG00000212365 uc021qeb.1 NG_033481 +HGNC:43233 RNA5SP333 RNA, 5S ribosomal pseudogene 333 pseudogene pseudogene Approved 11p15.1 11p15.1 RN5S333 RNA, 5S ribosomal 333 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480763 ENSG00000200336 uc057zpt.1 NG_045620 +HGNC:43234 RNA5SP334 RNA, 5S ribosomal pseudogene 334 pseudogene pseudogene Approved 11p15.1 11p15.1 RN5S334 RNA, 5S ribosomal 334 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106865375 ENSG00000201695 uc057zpx.1 NG_046323 +HGNC:43235 RNA5SP335 RNA, 5S ribosomal pseudogene 335 pseudogene pseudogene Approved 11p15.1 11p15.1 RN5S335 RNA, 5S ribosomal 335 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479007 ENSG00000200687 uc057ztu.1 NG_044154 +HGNC:43236 RNA5SP336 RNA, 5S ribosomal pseudogene 336 pseudogene pseudogene Approved 11p15.1 11p15.1 RN5S336 RNA, 5S ribosomal 336 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873599 ENSG00000201059 uc031xhq.2 NG_033482 +HGNC:43237 RNA5SP337 RNA, 5S ribosomal pseudogene 337 pseudogene pseudogene Approved 11p15.1 11p15.1 RN5S337 RNA, 5S ribosomal 337 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873600 ENSG00000252816 uc057zvk.1 NG_033483 +HGNC:43238 RNA5SP338 RNA, 5S ribosomal pseudogene 338 pseudogene pseudogene Approved 11p14.3 11p14.3 RN5S338 RNA, 5S ribosomal 338 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873601 ENSG00000222427 uc057zwc.1 NG_033484 +HGNC:43239 RNA5SP339 RNA, 5S ribosomal pseudogene 339 pseudogene pseudogene Approved 11p14.1 11p14.1 RN5S339 RNA, 5S ribosomal 339 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873602 ENSG00000212289 uc021qfe.1 NG_033485 +HGNC:43240 RNA5SP340 RNA, 5S ribosomal pseudogene 340 pseudogene pseudogene Approved 11p11.2 11p11.2 RN5S340 RNA, 5S ribosomal 340 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873603 ENSG00000252941 uc058bih.1 NG_033486 +HGNC:43241 RNA5SP341 RNA, 5S ribosomal pseudogene 341 pseudogene pseudogene Approved 11q12.1 11q12.1 RN5S341 RNA, 5S ribosomal 341 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873604 ENSG00000252070 uc058blz.1 NG_033487 +HGNC:43242 RNA5SP342 RNA, 5S ribosomal pseudogene 342 pseudogene pseudogene Approved 11q13.4 11q13.4 RN5S342 RNA, 5S ribosomal 342 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479008 ENSG00000252902 uc058ewd.1 NG_044162 +HGNC:43243 RNA5SP343 RNA, 5S ribosomal pseudogene 343 pseudogene pseudogene Approved 11q13.4 11q13.4 RN5S343 RNA, 5S ribosomal 343 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873605 ENSG00000200649 uc058fjc.1 NG_033488 +HGNC:43244 RNA5SP344 RNA, 5S ribosomal pseudogene 344 pseudogene pseudogene Approved 11q13.5 11q13.5 RN5S344 RNA, 5S ribosomal 344 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873606 ENSG00000223013 uc058fpw.1 NG_033489 +HGNC:43245 RNA5SP345 RNA, 5S ribosomal pseudogene 345 pseudogene pseudogene Approved 11q21 11q21 RN5S345 RNA, 5S ribosomal 345 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873607 ENSG00000222578 uc058grx.1 NG_033490 +HGNC:43246 RNA5SP346 RNA, 5S ribosomal pseudogene 346 pseudogene pseudogene Approved 11q21 11q21 RN5S346 RNA, 5S ribosomal 346 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873608 ENSG00000200411 uc058gst.1 NG_033491 +HGNC:43247 RNA5SP347 RNA, 5S ribosomal pseudogene 347 pseudogene pseudogene Approved 11q22.1 11q22.1 RN5S347 RNA, 5S ribosomal 347 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873609 ENSG00000199315 uc058gsx.1 NG_033492 +HGNC:43248 RNA5SP348 RNA, 5S ribosomal pseudogene 348 pseudogene pseudogene Approved 11q22.3 11q22.3 RN5S348 RNA, 5S ribosomal 348 2012-01-30 2012-08-09 2012-08-09 2015-01-30 100873610 NG_033493 +HGNC:43249 RNA5SP349 RNA, 5S ribosomal pseudogene 349 pseudogene pseudogene Approved 11q22.3 11q22.3 RN5S349 RNA, 5S ribosomal 349 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873611 ENSG00000200613 uc021qqc.1 NG_033494 +HGNC:43250 RNA5SP350 RNA, 5S ribosomal pseudogene 350 pseudogene pseudogene Approved 11q23.1 11q23.1 RN5S350 RNA, 5S ribosomal 350 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106481794 ENSG00000200168 uc021qqh.1 NG_043938 +HGNC:43251 RNA5SP351 RNA, 5S ribosomal pseudogene 351 pseudogene pseudogene Approved 11q23.1 11q23.1 RN5S351 RNA, 5S ribosomal 351 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480764 ENSG00000238965 uc058hgr.1 NG_043898 +HGNC:43252 RNA5SP352 RNA, 5S ribosomal pseudogene 352 pseudogene pseudogene Approved 11q24.2 11q24.2 RN5S352 RNA, 5S ribosomal 352 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873612 ENSG00000200278 uc031yir.2 NG_033496 +HGNC:43253 RNA5SP353 RNA, 5S ribosomal pseudogene 353 pseudogene pseudogene Approved 12p13.1 12p13.1 RN5S353 RNA, 5S ribosomal 353 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873613 ENSG00000201476 uc058llb.1 NG_033498 +HGNC:43254 RNA5SP354 RNA, 5S ribosomal pseudogene 354 pseudogene pseudogene Approved 12p11.23 12p11.23 RN5S354 RNA, 5S ribosomal 354 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873614 ENSG00000212549 uc058mcw.1 NG_033499 +HGNC:43255 RNA5SP355 RNA, 5S ribosomal pseudogene 355 pseudogene pseudogene Approved 12p11.22 12p11.22 RN5S355 RNA, 5S ribosomal 355 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479009 ENSG00000202187 uc058mhq.1 NG_045743 +HGNC:43256 RNA5SP356 RNA, 5S ribosomal pseudogene 356 pseudogene pseudogene Approved 12p11.22 12p11.22 RN5S356 RNA, 5S ribosomal 356 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873615 ENSG00000251781 uc058mjm.1 NG_033501 +HGNC:43257 RNA5SP357 RNA, 5S ribosomal pseudogene 357 pseudogene pseudogene Approved 12p11.1 12p11.1 RN5S357 RNA, 5S ribosomal 357 2012-01-30 2012-08-09 2012-08-09 2015-01-30 100873616 ENSG00000272435 uc031yyv.2 NG_033503 +HGNC:43258 RNA5SP358 RNA, 5S ribosomal pseudogene 358 pseudogene pseudogene Approved 12q12 12q12 RN5S358 RNA, 5S ribosomal 358 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873617 ENSG00000199843 uc031yzb.2 NG_033505 +HGNC:43259 RNA5SP359 RNA, 5S ribosomal pseudogene 359 pseudogene pseudogene Approved 12q12 12q12 RN5S359 RNA, 5S ribosomal 359 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873618 ENSG00000201708 uc058mqu.1 NG_033507 +HGNC:43260 RNA5SP360 RNA, 5S ribosomal pseudogene 360 pseudogene pseudogene Approved 12q12 12q12 RN5S360 RNA, 5S ribosomal 360 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873619 ENSG00000252364 uc058mtj.1 NG_033509 +HGNC:43261 RNA5SP361 RNA, 5S ribosomal pseudogene 361 pseudogene pseudogene Approved 12q12 12q12 RN5S361 RNA, 5S ribosomal 361 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873620 ENSG00000199556 uc058mxn.1 NG_033511 +HGNC:43262 RNA5SP362 RNA, 5S ribosomal pseudogene 362 pseudogene pseudogene Approved 12q14.3 12q14.3 RN5S362 RNA, 5S ribosomal 362 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873621 ENSG00000251857 uc021qzz.1 NG_033513 +HGNC:43263 RNA5SP363 RNA, 5S ribosomal pseudogene 363 pseudogene pseudogene Approved 12q21.2 12q21.2 RN5S363 RNA, 5S ribosomal 363 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873622 ENSG00000201942 uc058rif.1 NG_033515 +HGNC:43264 RNA5SP364 RNA, 5S ribosomal pseudogene 364 pseudogene pseudogene Approved 12q21.32 12q21.32 RN5S364 RNA, 5S ribosomal 364 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873623 ENSG00000252747 uc058rnx.1 NG_033517 +HGNC:43265 RNA5SP365 RNA, 5S ribosomal pseudogene 365 pseudogene pseudogene Approved 12q21.33 12q21.33 RN5S365 RNA, 5S ribosomal 365 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873624 ENSG00000252207 uc058rps.1 NG_033519 +HGNC:43266 RNA5SP366 RNA, 5S ribosomal pseudogene 366 pseudogene pseudogene Approved 12q23.1 12q23.1 RN5S366 RNA, 5S ribosomal 366 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873625 ENSG00000202324 uc021rcl.1 NG_033521 +HGNC:43267 RNA5SP367 RNA, 5S ribosomal pseudogene 367 pseudogene pseudogene Approved 12q23.2 12q23.2 RN5S367 RNA, 5S ribosomal 367 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873626 ENSG00000252366 uc058shb.1 NG_033523 +HGNC:43268 RNA5SP368 RNA, 5S ribosomal pseudogene 368 pseudogene pseudogene Approved 12q23.2 12q23.2 RN5S368 RNA, 5S ribosomal 368 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873627 ENSG00000201168 uc058sik.1 NG_033525 +HGNC:43269 RNA5SP369 RNA, 5S ribosomal pseudogene 369 pseudogene pseudogene Approved 12q23.2 12q23.2 RN5S369 RNA, 5S ribosomal 369 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873628 ENSG00000223046 uc058sip.1 NG_033527 +HGNC:43270 RNA5SP370 RNA, 5S ribosomal pseudogene 370 pseudogene pseudogene Approved 12q23.3 12q23.3 RN5S370 RNA, 5S ribosomal 370 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480765 ENSG00000199415 uc031zlm.2 NG_043905 +HGNC:43271 RNA5SP371 RNA, 5S ribosomal pseudogene 371 pseudogene pseudogene Approved 12q23.3 12q23.3 RN5S371 RNA, 5S ribosomal 371 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873629 ENSG00000222302 uc058ssy.1 NG_033529 +HGNC:43272 RNA5SP372 RNA, 5S ribosomal pseudogene 372 pseudogene pseudogene Approved 12q24.11 12q24.11 RN5S372 RNA, 5S ribosomal 372 2012-01-30 2012-08-09 2012-08-09 2014-11-18 100873630 ENSG00000212138 uc058sxc.1 NG_033531 +HGNC:43273 RNA5SP373 RNA, 5S ribosomal pseudogene 373 pseudogene pseudogene Approved 12q24.12 12q24.12 RN5S373 RNA, 5S ribosomal 373 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873631 ENSG00000253080 uc058tgr.1 NG_033533 +HGNC:43274 RNA5SP374 RNA, 5S ribosomal pseudogene 374 pseudogene pseudogene Approved 12q24.23 12q24.23 RN5S374 RNA, 5S ribosomal 374 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873632 ENSG00000199809 uc058two.1 NG_033535 +HGNC:43275 RNA5SP375 RNA, 5S ribosomal pseudogene 375 pseudogene pseudogene Approved 12q24.31 12q24.31 RN5S375 RNA, 5S ribosomal 375 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873633 ENSG00000199845 uc058uss.1 NG_033537 +HGNC:43276 RNA5SP376 RNA, 5S ribosomal pseudogene 376 pseudogene pseudogene Approved 12q24.33 12q24.33 RN5S376 RNA, 5S ribosomal 376 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479010 ENSG00000212251 uc058vft.1 NG_044179 +HGNC:43277 RNA5SP377 RNA, 5S ribosomal pseudogene 377 pseudogene pseudogene Approved 12q24.33 12q24.33 RN5S377 RNA, 5S ribosomal 377 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479011 ENSG00000212154 uc058vgf.1 NG_044188 +HGNC:43278 RNA5SP378 RNA, 5S ribosomal pseudogene 378 pseudogene pseudogene Approved 12q24.33 12q24.33 RN5S378 RNA, 5S ribosomal 378 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873634 ENSG00000200516 uc058vgr.1 NG_033539 +HGNC:43279 RNA5SP379 RNA, 5S ribosomal pseudogene 379 pseudogene pseudogene Approved 12q24.33 12q24.33 RN5S379 RNA, 5S ribosomal 379 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873635 ENSG00000201469 uc058vll.1 NG_033541 +HGNC:43280 RNA5SP380 RNA, 5S ribosomal pseudogene 380 pseudogene pseudogene Approved 14q11.2 14q11.2 RN5S380 RNA, 5S ribosomal 380 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873636 ENSG00000252999 uc058yqy.1 NG_033543 +HGNC:43281 RNA5SP381 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-05 +HGNC:43282 RNA5SP382 RNA, 5S ribosomal pseudogene 382 pseudogene pseudogene Approved 14q11.2 14q11.2 RN5S382 RNA, 5S ribosomal 382 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873637 ENSG00000200225 uc058yso.1 NG_033545 +HGNC:43283 RNA5SP383 RNA, 5S ribosomal pseudogene 383 pseudogene pseudogene Approved 14q12 14q12 RN5S383 RNA, 5S ribosomal 383 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873638 ENSG00000199804 uc058zyy.1 NG_033547 +HGNC:43284 RNA5SP384 RNA, 5S ribosomal pseudogene 384 pseudogene pseudogene Approved 14q21.3 14q21.3 RN5S384 RNA, 5S ribosomal 384 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873639 ENSG00000252424 uc059bfd.1 NG_033549 +HGNC:43285 RNA5SP385 RNA, 5S ribosomal pseudogene 385 pseudogene pseudogene Approved 14q22.1 14q22.1 RN5S385 RNA, 5S ribosomal 385 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873640 ENSG00000251756 uc059bmd.1 NG_033551 +HGNC:43286 RNA5SP386 RNA, 5S ribosomal pseudogene 386 pseudogene pseudogene Approved 14q24.1 14q24.1 RN5S386 RNA, 5S ribosomal 386 2012-01-30 2012-08-09 2012-08-09 2015-01-30 100873641 ENSG00000272253 uc059cqz.1 NG_033553 +HGNC:43287 RNA5SP387 RNA, 5S ribosomal pseudogene 387 pseudogene pseudogene Approved 14q24.3 14q24.3 RN5S387 RNA, 5S ribosomal 387 2012-01-30 2012-08-09 2012-08-09 2014-11-19 107133508 ENSG00000201096 uc032bgi.2 NG_046664 +HGNC:43288 RNA5SP388 RNA, 5S ribosomal pseudogene 388 pseudogene pseudogene Approved 14q24.3 14q24.3 RN5S388 RNA, 5S ribosomal 388 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873642 ENSG00000199454 uc021rwx.1 NG_033555 +HGNC:43289 RNA5SP389 RNA, 5S ribosomal pseudogene 389 pseudogene pseudogene Approved 14q32.33 14q32.33 RN5S389 RNA, 5S ribosomal 389 2012-01-30 2012-08-09 2012-08-09 2014-11-18 106480766 ENSG00000199480 uc032bnn.2 NG_043912 +HGNC:43290 RNA5SP390 RNA, 5S ribosomal pseudogene 390 pseudogene pseudogene Approved 15q12 15q12 RN5S390 RNA, 5S ribosomal 390 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873643 ENSG00000222123 uc059gwn.1 NG_033557 +HGNC:43291 RNA5SP391 RNA, 5S ribosomal pseudogene 391 pseudogene pseudogene Approved 15q12 15q12 RN5S391 RNA, 5S ribosomal 391 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873644 ENSG00000200326 uc059gxy.1 NG_033559 +HGNC:43292 RNA5SP392 RNA, 5S ribosomal pseudogene 392 pseudogene pseudogene Approved 15q15.1 15q15.1 RN5S392 RNA, 5S ribosomal 392 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873645 ENSG00000252714 uc059hrg.1 NG_033561 +HGNC:43293 RNA5SP393 RNA, 5S ribosomal pseudogene 393 pseudogene pseudogene Approved 15q15.1 15q15.1 RN5S393 RNA, 5S ribosomal 393 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873646 ENSG00000200293 uc021sjn.1 NG_033563 +HGNC:43294 RNA5SP394 RNA, 5S ribosomal pseudogene 394 pseudogene pseudogene Approved 15q21.2 15q21.2 RN5S394 RNA, 5S ribosomal 394 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873647 ENSG00000201086 uc059jcn.1 NG_033565 +HGNC:43295 RNA5SP395 RNA, 5S ribosomal pseudogene 395 pseudogene pseudogene Approved 15q21.2 15q21.2 RN5S395 RNA, 5S ribosomal 395 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873648 ENSG00000252376 uc059jdt.1 NG_033567 +HGNC:43296 RNA5SP396 RNA, 5S ribosomal pseudogene 396 pseudogene pseudogene Approved 15q22.2 15q22.2 RN5S396 RNA, 5S ribosomal 396 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873649 ENSG00000201704 uc059jva.1 NG_033569 +HGNC:43297 RNA5SP397 RNA, 5S ribosomal pseudogene 397 pseudogene pseudogene Approved 15q22.2 15q22.2 RN5S397 RNA, 5S ribosomal 397 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873650 ENSG00000212625 uc059jyw.1 NG_033571 +HGNC:43298 RNA5SP398 RNA, 5S ribosomal pseudogene 398 pseudogene pseudogene Approved 15q23 15q23 RN5S398 RNA, 5S ribosomal 398 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873651 ENSG00000252972 uc059ktk.1 NG_033573 +HGNC:43299 RNA5SP399 RNA, 5S ribosomal pseudogene 399 pseudogene pseudogene Approved 15q23 15q23 RN5S399 RNA, 5S ribosomal 399 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873652 ENSG00000200873 uc059kyh.1 NG_033575 +HGNC:43300 RNA5SP400 RNA, 5S ribosomal pseudogene 400 pseudogene pseudogene Approved 15q25.3 15q25.3 RN5S400 RNA, 5S ribosomal 400 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873653 ENSG00000252964 uc021stz.1 NG_033577 +HGNC:43301 RNA5SP401 RNA, 5S ribosomal pseudogene 401 pseudogene pseudogene Approved 15q26.2 15q26.2 RN5S401 RNA, 5S ribosomal 401 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873654 ENSG00000251729 uc059nrc.1 NG_033579 +HGNC:43302 RNA5SP402 RNA, 5S ribosomal pseudogene 402 pseudogene pseudogene Approved 15q26.3 15q26.3 RN5S402 RNA, 5S ribosomal 402 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873655 ENSG00000252957 uc059nvk.1 NG_033581 +HGNC:43303 RNA5SP403 RNA, 5S ribosomal pseudogene 403 pseudogene pseudogene Approved 16p13.2 16p13.2 RN5S403 RNA, 5S ribosomal 403 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479012 ENSG00000200468 uc021tcu.1 NG_044192 +HGNC:43304 RNA5SP404 RNA, 5S ribosomal pseudogene 404 pseudogene pseudogene Approved 16p13.2 16p13.2 RN5S404 RNA, 5S ribosomal 404 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873656 ENSG00000252927 uc021tcv.1 NG_033583 +HGNC:43305 RNA5SP405 RNA, 5S ribosomal pseudogene 405 pseudogene pseudogene Approved 16p12.1 16p12.1 RN5S405 RNA, 5S ribosomal 405 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873657 ENSG00000199929 uc021tfq.1 NG_033585 +HGNC:43306 RNA5SP406 RNA, 5S ribosomal pseudogene 406 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S406 RNA, 5S ribosomal 406 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873658 ENSG00000251915 uc059tsq.1 NG_033587 +HGNC:43307 RNA5SP407 RNA, 5S ribosomal pseudogene 407 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S407 RNA, 5S ribosomal 407 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873659 ENSG00000222207 uc059tsr.1 NG_033589 +HGNC:43308 RNA5SP408 RNA, 5S ribosomal pseudogene 408 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S408 RNA, 5S ribosomal 408 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873660 ENSG00000251924 uc059tss.1 NG_033591 +HGNC:43309 RNA5SP409 RNA, 5S ribosomal pseudogene 409 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S409 RNA, 5S ribosomal 409 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873661 ENSG00000252624 uc059tst.1 NG_033594 +HGNC:43310 RNA5SP410 RNA, 5S ribosomal pseudogene 410 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S410 RNA, 5S ribosomal 410 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873662 ENSG00000252094 uc059tsv.1 NG_033596 +HGNC:43311 RNA5SP411 RNA, 5S ribosomal pseudogene 411 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S411 RNA, 5S ribosomal 411 2012-01-30 2012-08-09 2012-08-09 2015-01-30 100887740 ENSG00000276599 uc059tsw.1 NR_049740 +HGNC:43312 RNA5SP412 RNA, 5S ribosomal pseudogene 412 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S412 RNA, 5S ribosomal 412 2012-01-30 2012-08-09 2012-08-09 2015-01-30 100873663 ENSG00000277004 uc059tsx.1 NG_033598 +HGNC:43313 RNA5SP413 RNA, 5S ribosomal pseudogene 413 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S413 RNA, 5S ribosomal 413 2012-01-30 2012-08-09 2012-08-09 2014-11-18 100873664 ENSG00000252182 uc059tsy.1 NG_033600 +HGNC:43314 RNA5SP414 RNA, 5S ribosomal pseudogene 414 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S414 RNA, 5S ribosomal 414 2012-01-30 2012-08-09 2012-08-09 2015-01-30 100873665 ENSG00000274228 uc059tta.1 NG_033602 +HGNC:43315 RNA5SP415 RNA, 5S ribosomal pseudogene 415 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S415 RNA, 5S ribosomal 415 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873666 ENSG00000253055 uc059ttb.1 NG_033604 +HGNC:43316 RNA5SP416 RNA, 5S ribosomal pseudogene 416 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S416 RNA, 5S ribosomal 416 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873667 ENSG00000252647 uc059ttc.1 NG_033606 +HGNC:43317 RNA5SP417 RNA, 5S ribosomal pseudogene 417 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S417 RNA, 5S ribosomal 417 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873668 ENSG00000252268 uc059ttd.1 NG_033608 +HGNC:43318 RNA5SP418 RNA, 5S ribosomal pseudogene 418 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S418 RNA, 5S ribosomal 418 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873669 ENSG00000251760 uc059tte.1 NG_033610 +HGNC:43319 RNA5SP419 RNA, 5S ribosomal pseudogene 419 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S419 RNA, 5S ribosomal 419 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873670 ENSG00000251717 uc059ttf.1 NG_033612 +HGNC:43320 RNA5SP420 RNA, 5S ribosomal pseudogene 420 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S420 RNA, 5S ribosomal 420 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873671 ENSG00000252806 uc059ttg.1 NG_033614 +HGNC:43321 RNA5SP421 RNA, 5S ribosomal pseudogene 421 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S421 RNA, 5S ribosomal 421 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873672 ENSG00000252673 uc059tth.1 NG_033616 +HGNC:43322 RNA5SP422 RNA, 5S ribosomal pseudogene 422 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S422 RNA, 5S ribosomal 422 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873673 ENSG00000252587 uc059tti.1 NG_033618 +HGNC:43323 RNA5SP423 RNA, 5S ribosomal pseudogene 423 pseudogene pseudogene Approved 16p11.1 16p11.1 RN5S423 RNA, 5S ribosomal 423 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873674 ENSG00000252936 uc059ttj.1 NG_033620 +HGNC:43324 RNA5SP424 RNA, 5S ribosomal pseudogene 424 pseudogene pseudogene Approved 16q12.1 16q12.1 RN5S424 RNA, 5S ribosomal 424 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873675 ENSG00000212290 uc059tvv.1 NG_033622 +HGNC:43325 RNA5SP425 RNA, 5S ribosomal pseudogene 425 pseudogene pseudogene Approved 16q12.1 16q12.1 RN5S425 RNA, 5S ribosomal 425 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873676 ENSG00000222268 uc059twg.1 NG_033624 +HGNC:43326 RNA5SP426 RNA, 5S ribosomal pseudogene 426 pseudogene pseudogene Approved 16q12.1 16q12.1 RN5S426 RNA, 5S ribosomal 426 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873677 ENSG00000199771 uc032dzo.2 NG_033626 +HGNC:43327 RNA5SP427 RNA, 5S ribosomal pseudogene 427 pseudogene pseudogene Approved 16q12.2 16q12.2 RN5S427 RNA, 5S ribosomal 427 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873678 ENSG00000202193 uc059ufa.1 NG_033628 +HGNC:43328 RNA5SP428 RNA, 5S ribosomal pseudogene 428 pseudogene pseudogene Approved 16q21 16q21 RN5S428 RNA, 5S ribosomal 428 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873679 ENSG00000201999 uc021tjk.1 NG_033630 +HGNC:43329 RNA5SP429 RNA, 5S ribosomal pseudogene 429 pseudogene pseudogene Approved 16q22.1 16q22.1 RN5S429 RNA, 5S ribosomal 429 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480767 ENSG00000200558 uc032edn.2 NG_043915 +HGNC:43330 RNA5SP430 RNA, 5S ribosomal pseudogene 430 pseudogene pseudogene Approved 16q23.1 16q23.1 RN5S430 RNA, 5S ribosomal 430 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873680 ENSG00000199299 uc059xhz.1 NG_033632 +HGNC:43331 RNA5SP431 RNA, 5S ribosomal pseudogene 431 pseudogene pseudogene Approved 16q23.2 16q23.2 RN5S431 RNA, 5S ribosomal 431 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873681 ENSG00000222244 uc059xla.1 NG_033634 +HGNC:43332 RNA5SP432 RNA, 5S ribosomal pseudogene 432 pseudogene pseudogene Approved 16q23.3 16q23.3 RN5S432 RNA, 5S ribosomal 432 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873682 ENSG00000199350 uc059xth.1 NG_033636 +HGNC:43333 RNA5SP433 RNA, 5S ribosomal pseudogene 433 pseudogene pseudogene Approved 16q24.1 16q24.1 RN5S433 RNA, 5S ribosomal 433 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873683 ENSG00000201361 uc021tly.1 NG_033638 +HGNC:43334 RNA5SP434 RNA, 5S ribosomal pseudogene 434 pseudogene pseudogene Approved 17p13.2 17p13.2 RN5S434 RNA, 5S ribosomal 434 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873684 ENSG00000252456 uc021tnx.1 NG_033640 +HGNC:43335 RNA5SP435 RNA, 5S ribosomal pseudogene 435 pseudogene pseudogene Approved 17p13.1 17p13.1 RN5S435 RNA, 5S ribosomal 435 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479013 ENSG00000200914 uc060aeg.1 NG_045758 +HGNC:43336 RNA5SP436 RNA, 5S ribosomal pseudogene 436 pseudogene pseudogene Approved 17p12 17p12 RN5S436 RNA, 5S ribosomal 436 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873685 ENSG00000251829 uc060boz.1 NG_033642 +HGNC:43337 RNA5SP437 RNA, 5S ribosomal pseudogene 437 pseudogene pseudogene Approved 17q11.2 17q11.2 RN5S437 RNA, 5S ribosomal 437 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873686 ENSG00000253058 uc060dsk.1 NG_033644 +HGNC:43338 RNA5SP438 RNA, 5S ribosomal pseudogene 438 pseudogene pseudogene Approved 17q12 17q12 RN5S438 RNA, 5S ribosomal 438 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873687 ENSG00000252370 uc060dxw.1 NG_033646 +HGNC:43339 RNA5SP439 RNA, 5S ribosomal pseudogene 439 pseudogene pseudogene Approved 17q12 17q12 RN5S439 RNA, 5S ribosomal 439 2012-01-30 2012-08-09 2012-08-09 2015-01-30 106479014 ENSG00000274164 uc060egr.1 NG_044204 +HGNC:43340 RNA5SP440 RNA, 5S ribosomal pseudogene 440 pseudogene pseudogene Approved 17q12 17q12 RN5S440 RNA, 5S ribosomal 440 2012-01-30 2012-08-09 2012-08-09 2015-01-30 100873688 ENSG00000276036 uc060enf.1 NG_033648 +HGNC:43341 RNA5SP441 RNA, 5S ribosomal pseudogene 441 pseudogene pseudogene Approved 17q21.2 17q21.2 RN5S441 RNA, 5S ribosomal 441 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873689 ENSG00000252618 uc060eyo.1 NG_033650 +HGNC:43342 RNA5SP442 RNA, 5S ribosomal pseudogene 442 pseudogene pseudogene Approved 17q21.2 17q21.2 RN5S442 RNA, 5S ribosomal 442 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480768 ENSG00000201920 uc060fcs.1 NG_043920 +HGNC:43343 RNA5SP443 RNA, 5S ribosomal pseudogene 443 pseudogene pseudogene Approved 17q21.31 17q21.31 RN5S443 RNA, 5S ribosomal 443 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106481745 ENSG00000199953 uc060ghb.1 NG_043579 +HGNC:43344 RNA5SP444 RNA, 5S ribosomal pseudogene 444 pseudogene pseudogene Approved 17q24.2 17q24.2 RN5S444 RNA, 5S ribosomal 444 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873690 ENSG00000252653 uc060izx.1 NG_033652 +HGNC:43345 RNA5SP445 RNA, 5S ribosomal pseudogene 445 pseudogene pseudogene Approved 17q24.2 17q24.2 RN5S445 RNA, 5S ribosomal 445 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873691 ENSG00000251698 uc060jag.1 NG_033654 +HGNC:43346 RNA5SP446 RNA, 5S ribosomal pseudogene 446 pseudogene pseudogene Approved 17q24.2 17q24.2 RN5S446 RNA, 5S ribosomal 446 2012-01-30 2012-08-09 2012-08-09 2014-11-18 100873692 ENSG00000251764 uc021ubz.1 NG_033656 +HGNC:43347 RNA5SP447 RNA, 5S ribosomal pseudogene 447 pseudogene pseudogene Approved 17q24.2 17q24.2 RN5S447 RNA, 5S ribosomal 447 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873693 ENSG00000200619 uc060jaw.1 NG_033658 +HGNC:43348 RNA5SP448 RNA, 5S ribosomal pseudogene 448 pseudogene pseudogene Approved 17q25.1 17q25.1 RN5S448 RNA, 5S ribosomal 448 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479015 ENSG00000200021 uc060joe.1 NG_044214 +HGNC:43349 RNA5SP449 RNA, 5S ribosomal pseudogene 449 pseudogene pseudogene Approved 18p11.22 18p11.22 RN5S449 RNA, 5S ribosomal 449 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873694 ENSG00000252680 uc060nhv.1 NG_033660 +HGNC:43350 RNA5SP450 RNA, 5S ribosomal pseudogene 450 pseudogene pseudogene Approved 18p11.22 18p11.22 RN5S450 RNA, 5S ribosomal 450 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873695 ENSG00000223138 uc060nih.1 NG_033662 +HGNC:43351 RNA5SP451 RNA, 5S ribosomal pseudogene 451 pseudogene pseudogene Approved 18q11.2 18q11.2 RN5S451 RNA, 5S ribosomal 451 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873696 ENSG00000222520 uc060nve.1 NG_033664 +HGNC:43352 RNA5SP452 RNA, 5S ribosomal pseudogene 452 pseudogene pseudogene Approved 18q11.2 18q11.2 RN5S452 RNA, 5S ribosomal 452 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873697 ENSG00000199874 uc060oan.1 NG_033666 +HGNC:43353 RNA5SP453 RNA, 5S ribosomal pseudogene 453 pseudogene pseudogene Approved 18q12.1 18q12.1 RN5S453 RNA, 5S ribosomal 453 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873698 ENSG00000199373 uc060ohj.1 NG_033668 +HGNC:43354 RNA5SP454 RNA, 5S ribosomal pseudogene 454 pseudogene pseudogene Approved 18q12.3 18q12.3 RN5S454 RNA, 5S ribosomal 454 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873699 ENSG00000253040 uc060orr.1 NG_033670 +HGNC:43355 RNA5SP455 RNA, 5S ribosomal pseudogene 455 pseudogene pseudogene Approved 18q12.3 18q12.3 RN5S455 RNA, 5S ribosomal 455 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873700 ENSG00000202060 uc060osb.1 NG_033672 +HGNC:43356 RNA5SP456 RNA, 5S ribosomal pseudogene 456 pseudogene pseudogene Approved 18q21.1 18q21.1 RN5S456 RNA, 5S ribosomal 456 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873701 ENSG00000200872 uc021ujp.1 NG_033674 +HGNC:43357 RNA5SP457 RNA, 5S ribosomal pseudogene 457 pseudogene pseudogene Approved 18q21.1 18q21.1 RN5S457 RNA, 5S ribosomal 457 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873702 ENSG00000200527 uc060pcw.1 NG_033676 +HGNC:43358 RNA5SP458 RNA, 5S ribosomal pseudogene 458 pseudogene pseudogene Approved 18q21.1 18q21.1 RN5S458 RNA, 5S ribosomal 458 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479016 ENSG00000251997 uc060peg.1 NG_044221 +HGNC:43359 RNA5SP459 RNA, 5S ribosomal pseudogene 459 pseudogene pseudogene Approved 18q21.2 18q21.2 RN5S459 RNA, 5S ribosomal 459 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873703 ENSG00000252437 uc060pie.1 NG_033678 +HGNC:43360 RNA5SP460 RNA, 5S ribosomal pseudogene 460 pseudogene pseudogene Approved 18q22.3 18q22.3 RN5S460 RNA, 5S ribosomal 460 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873704 ENSG00000252598 uc060qap.1 NG_033680 +HGNC:43361 RNA5SP461 RNA, 5S ribosomal pseudogene 461 pseudogene pseudogene Approved 18q23 18q23 RN5S461 RNA, 5S ribosomal 461 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873705 ENSG00000252260 uc060qhy.1 NG_033682 +HGNC:43362 RNA5SP462 RNA, 5S ribosomal pseudogene 462 pseudogene pseudogene Approved 19p13.3 19p13.3 RN5S462 RNA, 5S ribosomal 462 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873706 ENSG00000252539 uc060qod.1 NG_033684 +HGNC:43363 RNA5SP463 RNA, 5S ribosomal pseudogene 463 pseudogene pseudogene Approved 19p13.2 19p13.2 RN5S463 RNA, 5S ribosomal 463 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873707 ENSG00000199900 uc032hlr.2 NG_033686 +HGNC:43364 RNA5SP464 RNA, 5S ribosomal pseudogene 464 pseudogene pseudogene Approved 19p13.2 19p13.2 RN5S464 RNA, 5S ribosomal 464 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873708 ENSG00000252060 uc060two.1 NG_033688 +HGNC:43365 RNA5SP465 RNA, 5S ribosomal pseudogene 465 pseudogene pseudogene Approved 19p13.2 19p13.2 RN5S465 RNA, 5S ribosomal 465 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873709 ENSG00000212497 uc060twz.1 NG_033690 +HGNC:43366 RNA5SP466 RNA, 5S ribosomal pseudogene 466 pseudogene pseudogene Approved 19p13.2 19p13.2 RN5S466 RNA, 5S ribosomal 466 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873710 ENSG00000252546 uc060txe.1 NG_033692 +HGNC:43367 RNA5SP467 RNA, 5S ribosomal pseudogene 467 pseudogene pseudogene Approved 19p13.2 19p13.2 RN5S467 RNA, 5S ribosomal 467 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873711 ENSG00000212576 uc060txl.1 NG_033694 +HGNC:43368 RNA5SP468 RNA, 5S ribosomal pseudogene 468 pseudogene pseudogene Approved 19p13.11 19p13.11 RN5S468 RNA, 5S ribosomal 468 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480769 ENSG00000252591 uc060vnt.1 NG_045641 +HGNC:43369 RNA5SP469 RNA, 5S ribosomal pseudogene 469 pseudogene pseudogene Approved 19p12 19p12 RN5S469 RNA, 5S ribosomal 469 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873712 ENSG00000201035 uc032hqr.2 NG_033696 +HGNC:43370 RNA5SP470 RNA, 5S ribosomal pseudogene 470 pseudogene pseudogene Approved 19q12 19q12 RN5S470 RNA, 5S ribosomal 470 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873713 ENSG00000252272 uc021urx.1 NG_033698 +HGNC:43371 RNA5SP471 RNA, 5S ribosomal pseudogene 471 pseudogene pseudogene Approved 19q12 19q12 RN5S471 RNA, 5S ribosomal 471 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873714 ENSG00000252780 uc060wqh.1 NG_033700 +HGNC:43372 RNA5SP472 RNA, 5S ribosomal pseudogene 472 pseudogene pseudogene Approved 19q13.11 19q13.11 RN5S472 RNA, 5S ribosomal 472 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873715 ENSG00000200738 uc060wqy.1 NG_033702 +HGNC:43373 RNA5SP473 RNA, 5S ribosomal pseudogene 473 pseudogene pseudogene Approved 19q13.43 19q13.43 RN5S473 RNA, 5S ribosomal 473 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479017 ENSG00000252211 uc061dry.1 NG_044228 +HGNC:43374 RNA5SP474 RNA, 5S ribosomal pseudogene 474 pseudogene pseudogene Approved 20p13 20p13 RN5S474 RNA, 5S ribosomal 474 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873716 ENSG00000212536 uc021wah.1 NG_033704 +HGNC:43375 RNA5SP475 RNA, 5S ribosomal pseudogene 475 pseudogene pseudogene Approved 20p12.1 20p12.1 RN5S475 RNA, 5S ribosomal 475 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873717 ENSG00000222500 uc061vna.1 NG_033706 +HGNC:43376 RNA5SP476 RNA, 5S ribosomal pseudogene 476 pseudogene pseudogene Approved 20p11.23 20p11.23 RN5S476 RNA, 5S ribosomal 476 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873718 ENSG00000252422 uc061vqg.1 NG_033708 +HGNC:43377 RNA5SP477 RNA, 5S ribosomal pseudogene 477 pseudogene pseudogene Approved 20p11.23 20p11.23 RN5S477 RNA, 5S ribosomal 477 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873719 ENSG00000199509 uc061vtq.1 NG_033710 +HGNC:43378 RNA5SP478 RNA, 5S ribosomal pseudogene 478 pseudogene pseudogene Approved 20p11.21 20p11.21 RN5S478 RNA, 5S ribosomal 478 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873720 ENSG00000201527 uc061vuz.1 NG_033712 +HGNC:43379 RNA5SP479 RNA, 5S ribosomal pseudogene 479 pseudogene pseudogene Approved 20p11.21 20p11.21 RN5S479 RNA, 5S ribosomal 479 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873721 ENSG00000201728 uc061vvl.1 NG_033714 +HGNC:43380 RNA5SP480 RNA, 5S ribosomal pseudogene 480 pseudogene pseudogene Approved 20q11.21 20q11.21 RN5S480 RNA, 5S ribosomal 480 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873722 ENSG00000252649 uc061wbg.1 NG_033716 +HGNC:43381 RNA5SP481 RNA, 5S ribosomal pseudogene 481 pseudogene pseudogene Approved 20q11.21 20q11.21 RN5S481 RNA, 5S ribosomal 481 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873723 ENSG00000252623 uc032pfx.2 NG_033718 +HGNC:43382 RNA5SP482 RNA, 5S ribosomal pseudogene 482 pseudogene pseudogene Approved 20q11.21 20q11.21 RN5S482 RNA, 5S ribosomal 482 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873724 ENSG00000212571 uc061wdm.1 NG_046981 +HGNC:43383 RNA5SP483 RNA, 5S ribosomal pseudogene 483 pseudogene pseudogene Approved 20q11.22 20q11.22 RN5S483 RNA, 5S ribosomal 483 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873725 ENSG00000200301 uc061wla.1 NG_033721 +HGNC:43384 RNA5SP484 RNA, 5S ribosomal pseudogene 484 pseudogene pseudogene Approved 20q12 20q12 RN5S484 RNA, 5S ribosomal 484 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873726 ENSG00000238908 uc021wds.1 NG_033723 +HGNC:43385 RNA5SP485 RNA, 5S ribosomal pseudogene 485 pseudogene pseudogene Approved 20q13.12 20q13.12 RN5S485 RNA, 5S ribosomal 485 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873727 ENSG00000201923 uc021wek.1 NG_033725 +HGNC:43386 RNA5SP486 RNA, 5S ribosomal pseudogene 486 pseudogene pseudogene Approved 20q13.13 20q13.13 RN5S486 RNA, 5S ribosomal 486 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873728 ENSG00000251770 uc061xoq.1 NG_033281 +HGNC:43387 RNA5SP487 RNA, 5S ribosomal pseudogene 487 pseudogene pseudogene Approved 20q13.2 20q13.2 RN5S487 RNA, 5S ribosomal 487 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873729 ENSG00000222118 uc061xvz.1 NG_033283 +HGNC:43388 RNA5SP488 RNA, 5S ribosomal pseudogene 488 pseudogene pseudogene Approved 21q11.2 21q11.2 RN5S488 RNA, 5S ribosomal 488 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873730 ENSG00000201812 uc061zbc.1 NG_033285 +HGNC:43389 RNA5SP489 RNA, 5S ribosomal pseudogene 489 pseudogene pseudogene Approved 21q21.2 21q21.2 RN5S489 RNA, 5S ribosomal 489 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873731 ENSG00000238627 uc021whx.1 NG_033287 +HGNC:43390 RNA5SP490 RNA, 5S ribosomal pseudogene 490 pseudogene pseudogene Approved 21q22.11 21q22.11 RN5S490 RNA, 5S ribosomal 490 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873732 ENSG00000252950 uc061znr.1 NG_033289 +HGNC:43391 RNA5SP491 RNA, 5S ribosomal pseudogene 491 pseudogene pseudogene Approved 21q22.13 21q22.13 RN5S491 RNA, 5S ribosomal 491 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873733 ENSG00000199806 uc061zyz.1 NG_033291 +HGNC:43392 RNA5SP492 RNA, 5S ribosomal pseudogene 492 pseudogene pseudogene Approved 21q22.3 21q22.3 RN5S492 RNA, 5S ribosomal 492 2012-01-30 2012-08-09 2012-08-09 2014-11-18 100873734 ENSG00000223262 uc021wjp.1 NG_033293 +HGNC:43393 RNA5SP493 RNA, 5S ribosomal pseudogene 493 pseudogene pseudogene Approved 22q11.21 22q11.21 RN5S493 RNA, 5S ribosomal 493 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873735 ENSG00000200985 uc062cab.1 NG_033295 +HGNC:43394 RNA5SP494 RNA, 5S ribosomal pseudogene 494 pseudogene pseudogene Approved 22q12.1 22q12.1 RN5S494 RNA, 5S ribosomal 494 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873736 ENSG00000222585 uc062cmz.1 NG_033297 +HGNC:43395 RNA5SP495 RNA, 5S ribosomal pseudogene 495 pseudogene pseudogene Approved 22q12.1 22q12.1 RN5S495 RNA, 5S ribosomal 495 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873737 ENSG00000252267 uc062cot.1 NG_033299 +HGNC:43396 RNA5SP496 RNA, 5S ribosomal pseudogene 496 pseudogene pseudogene Approved 22q12.2 22q12.2 RN5S496 RNA, 5S ribosomal 496 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873738 ENSG00000212542 uc062dip.1 NG_033301 +HGNC:43397 RNA5SP497 RNA, 5S ribosomal pseudogene 497 pseudogene pseudogene Approved 22q12.3 22q12.3 RN5S497 RNA, 5S ribosomal 497 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873739 ENSG00000251890 uc021wog.1 NG_033303 +HGNC:43398 RNA5SP498 RNA, 5S ribosomal pseudogene 498 pseudogene pseudogene Approved Xp22.33 Xp22.33 RN5S498 RNA, 5S ribosomal 498 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480770 ENSG00000223274 uc065cnn.1 NG_043935 +HGNC:43399 RNA5SP499 RNA, 5S ribosomal pseudogene 499 pseudogene pseudogene Approved Xp22.31 Xp22.31 RN5S499 RNA, 5S ribosomal 499 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873550 ENSG00000200852 uc064xxr.1 NG_033392 +HGNC:43400 RNA5SP500 RNA, 5S ribosomal pseudogene 500 pseudogene pseudogene Approved Xp21.3 Xp21.3 RN5S500 RNA, 5S ribosomal 500 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873551 ENSG00000201356 uc033dto.2 NG_033394 +HGNC:43401 RNA5SP501 RNA, 5S ribosomal pseudogene 501 pseudogene pseudogene Approved Xp21.1 Xp21.1 RN5S501 RNA, 5S ribosomal 501 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873552 ENSG00000222922 uc064ymd.1 NG_033396 +HGNC:43402 RNA5SP502 RNA, 5S ribosomal pseudogene 502 pseudogene pseudogene Approved Xp11.4 Xp11.4 RN5S502 RNA, 5S ribosomal 502 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873553 ENSG00000199564 uc022bvb.3 NG_033398 +HGNC:43403 RNA5SP503 RNA, 5S ribosomal pseudogene 503 pseudogene pseudogene Approved Xp11.23 Xp11.23 RN5S503 RNA, 5S ribosomal 503 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873554 ENSG00000252856 uc064yww.1 NG_033400 +HGNC:43404 RNA5SP504 RNA, 5S ribosomal pseudogene 504 pseudogene pseudogene Approved Xp11.22 Xp11.22 RN5S504 RNA, 5S ribosomal 504 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873555 ENSG00000222608 uc064zij.1 NG_033402 +HGNC:43405 RNA5SP505 RNA, 5S ribosomal pseudogene 505 pseudogene pseudogene Approved Xp11.22 Xp11.22 RN5S505 RNA, 5S ribosomal 505 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873556 ENSG00000201618 uc064zlp.1 NG_033404 +HGNC:43406 RNA5SP506 RNA, 5S ribosomal pseudogene 506 pseudogene pseudogene Approved Xq13.1 Xq13.1 RN5S506 RNA, 5S ribosomal 506 2012-01-30 2012-08-09 2012-08-09 2015-01-30 100873557 ENSG00000272351 uc033ehg.2 NG_033406 +HGNC:43407 RNA5SP507 RNA, 5S ribosomal pseudogene 507 pseudogene pseudogene Approved Xq13.1 Xq13.1 RN5S507 RNA, 5S ribosomal 507 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873558 ENSG00000200473 uc022byo.1 NG_033408 +HGNC:43408 RNA5SP508 RNA, 5S ribosomal pseudogene 508 pseudogene pseudogene Approved Xq13.3 Xq13.3 RN5S508 RNA, 5S ribosomal 508 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873559 ENSG00000223259 uc065aas.1 NG_033410 +HGNC:43409 RNA5SP509 RNA, 5S ribosomal pseudogene 509 pseudogene pseudogene Approved Xq21.1 Xq21.1 RN5S509 RNA, 5S ribosomal 509 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873560 ENSG00000201447 uc065aax.1 NG_033412 +HGNC:43410 RNA5SP510 RNA, 5S ribosomal pseudogene 510 pseudogene pseudogene Approved Xq21.33 Xq21.33 RN5S510 RNA, 5S ribosomal 510 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873561 ENSG00000201567 uc065aex.1 NG_033414 +HGNC:43411 RNA5SP511 RNA, 5S ribosomal pseudogene 511 pseudogene pseudogene Approved Xq22.2 Xq22.2 RN5S511 RNA, 5S ribosomal 511 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873562 ENSG00000222419 uc065amz.1 NG_033416 +HGNC:43412 RNA5SP512 RNA, 5S ribosomal pseudogene 512 pseudogene pseudogene Approved Xq23 Xq23 RN5S512 RNA, 5S ribosomal 512 2012-01-30 2012-08-09 2012-08-09 2014-11-18 100873563 ENSG00000201420 uc065asm.1 NG_033418 +HGNC:43413 RNA5SP513 RNA, 5S ribosomal pseudogene 513 pseudogene pseudogene Approved Xq25 Xq25 RN5S513 RNA, 5S ribosomal 513 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873564 ENSG00000201518 uc065baz.1 NG_033420 +HGNC:43414 RNA5SP514 RNA, 5S ribosomal pseudogene 514 pseudogene pseudogene Approved Xq26.2 Xq26.2 RN5S514 RNA, 5S ribosomal 514 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873565 ENSG00000200587 uc065bdc.1 NG_033422 +HGNC:43415 RNA5SP515 RNA, 5S ribosomal pseudogene 515 pseudogene pseudogene Approved Xq26.3 Xq26.3 RN5S515 RNA, 5S ribosomal 515 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873566 ENSG00000201440 uc065bft.1 NG_033424 +HGNC:43416 RNA5SP516 RNA, 5S ribosomal pseudogene 516 pseudogene pseudogene Approved Xq27.2 Xq27.2 RN5S516 RNA, 5S ribosomal 516 2012-01-30 2012-08-09 2012-08-09 2014-11-18 100873567 ENSG00000201000 uc065bkn.1 NG_033426 +HGNC:43417 RNA5SP517 RNA, 5S ribosomal pseudogene 517 pseudogene pseudogene Approved Xq27.3 Xq27.3 RN5S517 RNA, 5S ribosomal 517 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873568 ENSG00000201594 uc065bla.1 NG_033428 +HGNC:43418 RNA5SP518 RNA, 5S ribosomal pseudogene 518 pseudogene pseudogene Approved Yp11.2 Yp11.2 RN5S518 RNA, 5S ribosomal 518 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873569 ENSG00000251766 uc065cre.1 NG_033430 +HGNC:43419 RNA5SP519 RNA, 5S ribosomal pseudogene 519 pseudogene pseudogene Approved Yp11.2 Yp11.2 RN5S519 RNA, 5S ribosomal 519 2012-01-30 2012-08-09 2012-08-09 2014-11-19 100873570 ENSG00000252289 uc065crf.1 NG_033432 +HGNC:43420 RNA5SP520 RNA, 5S ribosomal pseudogene 520 pseudogene pseudogene Approved Yq11.221 Yq11.221 RN5S520 RNA, 5S ribosomal 520 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480771 ENSG00000252315 uc065css.1 NG_045647 +HGNC:43421 RNA5SP521 RNA, 5S ribosomal pseudogene 521 pseudogene pseudogene Approved Yq11.221 Yq11.221 RN5S521 RNA, 5S ribosomal 521 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479018 ENSG00000252012 uc065cst.1 NG_045777 +HGNC:43422 RNA5SP522 RNA, 5S ribosomal pseudogene 522 pseudogene pseudogene Approved Yq11.222 Yq11.222 RN5S522 RNA, 5S ribosomal 522 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106479019 ENSG00000251953 uc065ctd.1 NG_044243 +HGNC:43423 RNA5SP523 RNA, 5S ribosomal pseudogene 523 pseudogene pseudogene Approved Yq11.222 Yq11.222 RN5S523 RNA, 5S ribosomal 523 2012-01-30 2012-08-09 2012-08-09 2014-11-19 106480772 ENSG00000252667 uc065cte.1 NG_043951 +HGNC:44278 RNA18S1 RNA, 18S ribosomal 1 non-coding RNA RNA, ribosomal Approved 13p12 13p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632259 +HGNC:44279 RNA18S2 RNA, 18S ribosomal 2 non-coding RNA RNA, ribosomal Approved 14p12 14p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632258 +HGNC:44280 RNA18S3 RNA, 18S ribosomal 3 non-coding RNA RNA, ribosomal Approved 15p12 15p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106631782 +HGNC:44281 RNA18S4 RNA, 18S ribosomal 4 non-coding RNA RNA, ribosomal Approved 21p12 21p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106631781 +HGNC:37657 RNA18S5 RNA, 18S ribosomal 5 non-coding RNA RNA, ribosomal Approved 22p12 22p12 RN18S1 Ribosomal RNAs 848 2009-12-16 2012-08-07 2012-08-07 2012-08-13 100008588 NR_003286 8972871 +HGNC:37658 RNA18SP2 RNA, 18S ribosomal pseudogene 2 pseudogene pseudogene Approved Yp11.2 Yp11.2 RN18S2P RNA, 18S ribosomal 2, pseudogene 2009-12-16 2012-08-07 2012-08-07 2013-05-20 359724 NG_002801 +HGNC:44286 RNA28S1 RNA, 28S ribosomal 1 non-coding RNA RNA, ribosomal Approved 13p12 13p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632267 +HGNC:44287 RNA28S2 RNA, 28S ribosomal 2 non-coding RNA RNA, ribosomal Approved 14p12 14p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632266 +HGNC:44288 RNA28S3 RNA, 28S ribosomal 3 non-coding RNA RNA, ribosomal Approved 15p12 15p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632265 +HGNC:44289 RNA28S4 RNA, 28S ribosomal 4 non-coding RNA RNA, ribosomal Approved 21p12 21p12 Ribosomal RNAs 848 2012-08-07 2012-08-13 106632264 +HGNC:37659 RNA28S5 RNA, 28S ribosomal 5 non-coding RNA RNA, ribosomal Approved 22p12 22p12 RN28S1 Ribosomal RNAs 848 2009-12-16 2012-08-07 2012-08-07 2015-02-19 100008589 NR_003287 +HGNC:44274 RNA45S1 RNA, 45S pre-ribosomal 1 non-coding RNA RNA, ribosomal Approved 13p12 13p12 2012-08-07 2015-02-19 106631780 +HGNC:44275 RNA45S2 RNA, 45S pre-ribosomal 2 non-coding RNA RNA, ribosomal Approved 14p12 14p12 2012-08-07 2015-02-19 106631779 +HGNC:44276 RNA45S3 RNA, 45S pre-ribosomal 3 non-coding RNA RNA, ribosomal Approved 15p12 15p12 2012-08-07 2015-02-19 106631778 +HGNC:44277 RNA45S4 RNA, 45S pre-ribosomal 4 non-coding RNA RNA, ribosomal Approved 21p12 21p12 2012-08-07 2015-02-19 106631777 +HGNC:44273 RNA45S5 RNA, 45S pre-ribosomal 5 non-coding RNA RNA, ribosomal Approved 22p12 22p12 2012-08-07 2012-08-07 2015-02-19 100861532 NR_046235 +HGNC:10044 RNASE1 ribonuclease A family member 1, pancreatic protein-coding gene gene with protein product Approved 14q11.2 14q11.2 RAC1 RNS1 ribonuclease, RNase A family, 1 (pancreatic) Ribonuclease A family 723 1990-02-24 2016-01-20 2016-01-20 6035 ENSG00000129538 OTTHUMG00000029603 uc001vyi.4 BC005324 NM_002933 CCDS9559 P07998 8588814 MGI:97919 RGD:1310106 RNASE1 180440 3.1.27.5 +HGNC:10045 RNASE2 ribonuclease A family member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "EDN|RAF3" eosinophil-derived neurotoxin RNS2 ribonuclease, RNase A family, 2 (liver, eosinophil-derived neurotoxin) Ribonuclease A family 723 1990-02-24 2016-01-20 2016-01-20 6036 ENSG00000169385 OTTHUMG00000029607 uc001vyl.2 X55988 NM_002934 CCDS9561 P10153 "1577491|2734298" "MGI:1858598|MGI:1890465" RGD:1359432 RNASE2 131410 +HGNC:10046 RNASE3 ribonuclease A family member 3 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "ECP|RAF1" eosinophil cationic protein RNS3 ribonuclease, RNase A family, 3 Ribonuclease A family 723 1990-02-24 2016-01-20 2016-01-20 6037 ENSG00000169397 OTTHUMG00000029604 uc001vyj.4 X55990 NM_002935 CCDS9560 P12724 1577491 RGD:621580 RNASE3 131398 3.1.27.- +HGNC:10047 RNASE4 ribonuclease A family member 4 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 RAB1 ribonuclease, RNase A family, 4 Ribonuclease A family 723 1997-07-22 2016-01-20 2016-10-05 6038 ENSG00000258818 OTTHUMG00000029575 uc001vxy.6 U36775 NM_002937 CCDS9555 P34096 7501448 MGI:1926217 RGD:61823 RNASE4 601030 +HGNC:10048 RNASE6 ribonuclease A family member k6 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "RAD1|RNaseK6" RNase k6 RNS6 ribonuclease, RNase A family, k6 Ribonuclease A family 723 1997-01-08 2016-01-20 2016-10-05 6039 ENSG00000169413 OTTHUMG00000029585 uc001vye.4 U64998 XM_017021566 CCDS9558 Q93091 "8836175|9647635" MGI:1925666 RGD:1303020 RNASE6 601981 +HGNC:19278 RNASE7 ribonuclease A family member 7 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 RAE1 ribonuclease, RNase A family, 7 Ribonuclease A family 723 2003-02-14 2016-01-20 2016-10-05 84659 ENSG00000165799 OTTHUMG00000171358 uc001vzk.4 AJ131212 NM_032572 CCDS41914 Q9H1E1 "12244054|12527768" RNASE7 612484 +HGNC:19277 RNASE8 ribonuclease A family member 8 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 RAE2 ribonuclease, RNase A family, 8 Ribonuclease A family 723 2003-02-14 2016-01-20 2016-10-05 122665 ENSG00000173431 OTTHUMG00000029645 uc010tlm.3 AF473854 NM_138331 CCDS9567 Q8TDE3 11861908 RNASE8 612485 +HGNC:20673 RNASE9 ribonuclease A family member 9 (inactive) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "h461|RAK1" ribonuclease, RNase A family, 9 (non-active) Ribonuclease A family 723 2004-11-15 2016-01-20 2016-01-20 390443 ENSG00000188655 OTTHUMG00000170989 uc058yuf.1 AY665804 NM_001001673 "CCDS32036|CCDS53883|CCDS55904" P60153 "15676279|12920233" MGI:3057273 RGD:1359501 RNASE9 614014 +HGNC:19275 RNASE10 ribonuclease A family member 10 (inactive) protein-coding gene gene with protein product Approved 14q11.1 14q11.1 "RNASE9|RAH1" ribonuclease, RNase A family, 10 (non-active) Ribonuclease A family 723 2004-11-15 2016-01-20 2016-01-20 338879 ENSG00000182545 OTTHUMG00000170986 uc010tlj.3 XM_292225 CCDS32035 Q5GAN6 "12920233|15676279" MGI:1922269 RGD:1310415 RNASE10 +HGNC:19269 RNASE11 ribonuclease A family member 11 (inactive) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 RAJ1 C14orf6 "chromosome 14 open reading frame 6|ribonuclease, RNase A family, 11 (non-active)" Ribonuclease A family 723 2002-11-27 2004-11-18 2016-01-20 2016-10-05 122651 ENSG00000173464 OTTHUMG00000170990 uc058yui.1 BC025410 NM_145250 CCDS9553 Q8TAA1 15676279 MGI:3528583 RGD:1359723 RNASE11 +HGNC:24211 RNASE12 ribonuclease A family member 12 (inactive) protein-coding gene gene with protein product Approved 14q11.2 14q11.2 RAI1 ribonuclease, RNase A family, 12 (non-active) Ribonuclease A family 723 2004-12-03 2016-01-20 2016-10-05 493901 ENSG00000258436 OTTHUMG00000170991 uc001vxt.4 NM_001024822 CCDS32037 Q5GAN4 15676279 MGI:3528588 RGD:1307829 RNASE12 +HGNC:25285 RNASE13 ribonuclease A family member 13 (inactive) protein-coding gene gene with protein product Approved 14q11.1 14q11.1 RAL1 ribonuclease, RNase A family, 13 (non-active) Ribonuclease A family 723 2004-12-03 2016-01-20 2016-01-20 440163 ENSG00000206150 OTTHUMG00000171110 uc001vzj.3 AY665808 NM_001012264 CCDS32039 Q5GAN3 15676279 MGI:3528592 RGD:1359386 RNASE13 +HGNC:18466 RNASEH1 ribonuclease H1 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 RNase H1 2002-06-05 2016-10-12 246243 ENSG00000171865 OTTHUMG00000090279 uc002qxt.5 AF039652 XR_001738689 CCDS1647 O60930 "12036296|17964265" MGI:1335073 RGD:1309012 LRG_1090|http://www.lrg-sequence.org/LRG/LRG_1090 RNASEH1 604123 435761 3.1.26.- +HGNC:49289 RNASEH1-AS1 RNASEH1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p25.3 02p25.3 2013-10-15 2013-10-15 100506054 ENSG00000234171 OTTHUMG00000151419 NR_038429 +HGNC:10049 RNASEH1P1 ribonuclease H1 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 RNH1 RNASEH1 ribonuclease H1 1998-07-15 2002-06-07 2002-06-05 2012-02-29 284203 ENSG00000265790 OTTHUMG00000178915 AF048994 NG_004111 "9799596|12036296" PGOHUM00000236976 +HGNC:18715 RNASEH1P2 ribonuclease H1 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2004-06-08 2014-11-19 390766 ENSG00000231458 OTTHUMG00000059176 NG_004110 12036296 +HGNC:18716 RNASEH1P3 ribonuclease H1 pseudogene 3 pseudogene pseudogene Approved 1q32.2 01q32.2 2004-06-08 2004-06-08 199827 NG_001567 12036296 +HGNC:18518 RNASEH2A ribonuclease H2 subunit A protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "RNASEHI|RNHIA|RNHL|AGS4" "ribonuclease H2, large subunit|Aicardi-Goutieres syndrome 4|ribonuclease H2, subunit A" 2002-06-05 2015-12-01 2016-10-12 10535 ENSG00000104889 OTTHUMG00000180481 uc002mvg.2 Z97029 NM_006397 CCDS12282 O75792 "9789007|16845400" MGI:1916974 RGD:1307248 LRG_278|http://www.lrg-sequence.org/LRG/LRG_278 RNASEH2A 606034 118329 3.1.26.- +HGNC:25671 RNASEH2B ribonuclease H2 subunit B protein-coding gene gene with protein product Approved 13q14.3 13q14.3 FLJ11712 "DLEU8|AGS2" "deleted in lymphocytic leukemia 8|Aicardi-Goutieres syndrome 2|ribonuclease H2, subunit B" 2006-04-10 2006-08-17 2015-12-01 2016-10-12 79621 ENSG00000136104 OTTHUMG00000016937 uc001vfa.4 AK021774 NM_024570 "CCDS9425|CCDS45047" Q5TBB1 16845400 MGI:1914403 RGD:1359710 LRG_279|http://www.lrg-sequence.org/LRG/LRG_279 RNASEH2B 610326 118335 +HGNC:39967 RNASEH2B-AS1 RNASEH2B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.3 13q14.3 RNASEH2B antisense RNA 1 (non-protein coding) 2011-04-18 2012-08-15 2014-11-19 100874255 ENSG00000233672 OTTHUMG00000016938 uc058xct.1 NR_046552 +HGNC:24116 RNASEH2C ribonuclease H2 subunit C protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "AYP1|AGS3" Aicardi-Goutieres syndrome 3 ribonuclease H2, subunit C 2006-08-17 2015-12-01 2016-10-12 84153 ENSG00000172922 OTTHUMG00000166601 uc001ofn.4 AF312034 NM_032193 CCDS8111 Q8TDP1 "8244390|16845400" MGI:1915459 RGD:2319141 LRG_280|http://www.lrg-sequence.org/LRG/LRG_280 RNASEH2C 610330 118340 +HGNC:24117 RNASEH2CP1 ribonuclease H2 subunit C pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 AYP1p1 ribonuclease H2, subunit C pseudogene 1 2009-12-17 2015-12-01 2016-10-05 386608 ENSG00000237659 OTTHUMG00000036081 Z48511 NG_011584 "7633446|8244390" PGOHUM00000233889 +HGNC:33911 RNASEK ribonuclease K protein-coding gene gene with protein product Approved 17p13.1 17p13.1 MGC71993 ribonuclease, RNase K 2007-12-06 2016-01-20 2016-04-25 440400 ENSG00000219200 OTTHUMG00000170145 uc060agq.1 AK289930 NM_001004333 CCDS45594 Q6P5S7 "17881363|26212330" MGI:106369 RGD:1305687 RNASEK 617098 +HGNC:44419 RNASEK-C17orf49 RNASEK-C17orf49 readthrough other readthrough Approved 17p13.1 17p13.1 RNASEK-C17orf49 readthrough (non-protein coding) 2012-10-08 2013-05-09 2013-06-20 100529209 ENSG00000161939 OTTHUMG00000170146 uc060agz.1 NR_037717 +HGNC:10050 RNASEL ribonuclease L protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "RNS4|PRCA1" "prostate cancer 1|ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)" Ankyrin repeat domain containing 403 1993-06-09 2016-01-25 2016-10-05 6041 ENSG00000135828 OTTHUMG00000035213 uc009wxz.3 L10381 NM_021133 CCDS1347 Q05823 7514564 MGI:1098272 RGD:727933 RNASEL 180435 118344 3.1.26.- +HGNC:21686 RNASET2 ribonuclease T2 protein-coding gene gene with protein product Approved 6q27 06q27 "RNASE6PL|FLJ10907|bA514O12.3" 2003-11-26 2014-11-19 8635 ENSG00000026297 OTTHUMG00000016009 uc063svw.1 AJ419866 NM_003730 CCDS5295 O00584 9192857 "MGI:1915445|MGI:3702087" RGD:1309918 RNASET2 612944 201560 +HGNC:18314 RND1 Rho family GTPase 1 protein-coding gene gene with protein product Approved 12q12 12q12 "Rho6|ARHS|RHOS" ras homolog gene family, member S Rho family GTPases 390 2004-01-29 2014-11-18 27289 ENSG00000172602 OTTHUMG00000170400 uc001rsn.4 Y07923 NM_014470 CCDS8771 Q92730 9531558 MGI:2444878 RGD:1306338 RND1 609038 +HGNC:18315 RND2 Rho family GTPase 2 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "Rho7|RhoN" ARHN ras homolog gene family, member N Rho family GTPases 390 2002-09-13 2005-01-24 2005-01-24 2014-11-18 8153 ENSG00000108830 OTTHUMG00000180817 uc002icn.4 X95456 NM_005440 CCDS11452 P52198 MGI:1338755 RGD:1306172 RND2 601555 +HGNC:671 RND3 Rho family GTPase 3 protein-coding gene gene with protein product Approved 2q23.3 02q23.3 "RhoE|Rho8" ARHE ras homolog gene family, member E Rho family GTPases 390 1997-04-16 2005-01-27 2005-01-24 2015-08-25 390 ENSG00000115963 OTTHUMG00000131859 uc002txg.4 NM_005168 CCDS2190 P61587 8649376 MGI:1921444 RGD:1359690 RND3 602924 +HGNC:10061 RNF2 ring finger protein 2 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "BAP-1|BAP1|DING|HIPI3|RING1B|RING2" Ring finger proteins 58 1997-06-09 2014-11-19 6045 ENSG00000121481 OTTHUMG00000035391 uc001grc.2 "BC012583|Y10571" NM_007212 CCDS1365 Q99496 11513855 MGI:1101759 RGD:1305491 RNF2 608985 +HGNC:33987 RNF2P1 ring finger protein 2 pseudogene 1 pseudogene pseudogene Approved 9p24.1 09p24.1 RNF2P ring finger protein 2 pseudogene 2008-02-01 2010-03-05 2010-03-05 2014-11-19 100132467 ENSG00000231381 OTTHUMG00000019528 NG_008708 PGOHUM00000235958 +HGNC:10067 RNF4 ring finger protein 4 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "RES4-26|SNURF|SLX5" Ring finger proteins 58 1997-07-01 2014-11-19 6047 ENSG00000063978 OTTHUMG00000160516 uc003gfb.4 U95140 NM_002938 "CCDS47001|CCDS54713" P78317 9479498 MGI:1201691 RGD:3583 RNF4 602850 +HGNC:10068 RNF5 ring finger protein 5 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "NG2|G16|RING5|RMA1" ring finger protein 5, E3 ubiquitin protein ligase Ring finger proteins 58 1997-10-16 2016-04-05 2016-04-05 6048 ENSG00000204308 OTTHUMG00000031093 uc011ivg.3 U89336 NM_006913 CCDS4745 Q99942 9533025 MGI:1860076 RGD:1588458 RNF5 602677 +HGNC:31053 RNF5P1 ring finger protein 5 pseudogene 1 pseudogene pseudogene Approved 8p11.23 08p11.23 ring finger protein 5, E3 ubiquitin protein ligase pseudogene 1 Ring finger proteins 58 2005-03-31 2016-04-05 2016-04-05 286140 ENSG00000253570 OTTHUMG00000163988 NR_003129 +HGNC:10069 RNF6 ring finger protein 6 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 DKFZp686P0776 RING-H2 protein RNF-6 ring finger protein (C3H2C3 type) 6 Ring finger proteins 58 1998-08-26 2016-04-05 2016-10-05 6049 ENSG00000127870 OTTHUMG00000016614 uc001uqq.4 AJ010346 NM_005977 CCDS9316 Q9Y252 10331950 MGI:1921382 RGD:1306092 RNF6 604242 +HGNC:39922 RNF6P1 ring finger protein 6 pseudogene 1 pseudogene pseudogene Approved 21q22.2 21q22.2 ring finger protein (C3H2C3 type) 6 pseudogene 1 2011-04-12 2016-04-05 2016-04-05 100420924 ENSG00000227406 OTTHUMG00000102163 NG_025045 PGOHUM00000239086 +HGNC:10070 RNF7 ring finger protein 7 protein-coding gene gene with protein product Approved 3q23 03q23 "SAG|ROC2|CKBBP1" sensitive to apoptosis, zinc RING finger protein SAG, regulator of cullins 2 Ring finger proteins 58 1999-05-28 2016-10-05 9616 ENSG00000114125 OTTHUMG00000141305 uc003eud.4 AF092878 NM_014245 "CCDS3118|CCDS43158|CCDS56283" Q9UBF6 "10082581|10230407" MGI:1337096 RGD:1311048 RNF7 603863 +HGNC:43425 RNF7P1 ring finger protein 7 pseudogene 1 pseudogene pseudogene Approved 3p14.3 03p14.3 2011-10-10 2011-10-10 100506872 ENSG00000239831 OTTHUMG00000158603 NG_030103 PGOHUM00000237633 +HGNC:10071 RNF8 ring finger protein 8 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 KIAA0646 "ring finger protein (C3HC4 type) 8|ring finger protein 8|ring finger protein 8, E3 ubiquitin protein ligase" Ring finger proteins 58 1999-09-29 2016-03-11 2016-10-05 9025 ENSG00000112130 OTTHUMG00000014620 uc003onq.4 AB012770 XM_017011462 "CCDS4833|CCDS4834" O76064 "9734811|9852682" MGI:1929069 RGD:1308035 RNF8 611685 +HGNC:10055 RNF10 ring finger protein 10 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "KIAA0262|RIE2" Ring finger proteins 58 2000-01-07 2016-10-05 9921 ENSG00000022840 OTTHUMG00000168999 uc001typ.5 AB027196 XM_006719717 "CCDS9201|CCDS81746" Q8N5U6 MGI:1859162 RGD:1309282 RNF10 615998 +HGNC:44472 RNF10P1 ring finger protein 10 pseudogene 1 pseudogene pseudogene Approved 3p26.1 03p26.1 2012-11-01 2012-11-01 100419599 ENSG00000230182 OTTHUMG00000155237 NG_025552 PGOHUM00000237524 +HGNC:10056 RNF11 ring finger protein 11 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "CGI-123|Sid1669p|MGC51169" Ring finger proteins 58 2000-01-07 2016-10-05 26994 ENSG00000123091 OTTHUMG00000008190 uc001csi.5 AB024703 NM_014372 CCDS556 Q9Y3C5 "10673045|10810093" MGI:1352759 RGD:1591050 RNF11 612598 +HGNC:33988 RNF11P1 ring finger protein 11 pseudogene 1 pseudogene pseudogene Approved 2q32.2 02q32.2 2008-02-01 2008-02-01 100131695 NG_008707 +HGNC:16535 RNF11P2 ring finger protein 11 pseudogene 2 pseudogene pseudogene Approved 20p12.1 20p12.1 bA280O9.1 RNF11B ring finger protein 11B, pseudogene Ring finger proteins 58 2001-09-17 2008-02-01 2008-02-01 2016-07-22 170543 ENSG00000227563 OTTHUMG00000031916 AL121582 NG_001052 PGOHUM00000296903 +HGNC:10057 RNF13 ring finger protein 13 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 RZF Ring finger proteins 58 1999-10-19 2015-08-25 11342 ENSG00000082996 OTTHUMG00000150338 uc003exp.5 AF037204 NM_183384 CCDS3146 O43567 MGI:1346341 RGD:1594062 RNF13 609247 +HGNC:10058 RNF14 ring finger protein 14 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "ARA54|HFB30|TRIAD2" Ring finger proteins 58 1999-12-14 2016-10-05 9604 ENSG00000013561 OTTHUMG00000129660 uc003llz.4 AF060544 NM_004290 "CCDS4270|CCDS4271" Q9UBS8 "10085091|10320776" MGI:1929668 RGD:1589576 RNF14 605675 +HGNC:10060 RNF17 ring finger protein 17 protein-coding gene gene with protein product Approved 13q12.12 13q12.12 "Mmip-2|SPATA23|FLJ11045" spermatogenesis associated 23 TDRD4 tudor domain containing 4 "Ring finger proteins|Tudor domain containing" "58|780" 2000-06-16 2016-10-05 56163 ENSG00000132972 OTTHUMG00000016589 uc001upr.4 "AF285602|AK001907" NM_031994 CCDS9308 Q9BXT8 11279525 MGI:1353419 RGD:1310486 RNF17 605793 +HGNC:13432 RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved 8q22 08q22 "dorfin|DKFZp566B1346" RNF19 "ring finger protein 19|ring finger protein 19A|ring finger protein 19A, E3 ubiquitin protein ligase" Ring finger proteins 58 2003-02-28 2007-08-20 2013-10-03 2014-11-19 25897 ENSG00000034677 OTTHUMG00000164707 uc064pac.1 AB029316 NM_015435 CCDS6286 Q9NV58 "11237715|10976766" MGI:1353623 RGD:1307807 RNF19A 607119 +HGNC:26886 RNF19B ring finger protein 19B protein-coding gene gene with protein product Approved 1p35.1 01p35.1 FLJ90005 IBRDC3 IBR domain containing 3 Ring finger proteins 58 2004-03-02 2007-08-20 2007-08-20 2014-11-19 127544 ENSG00000116514 OTTHUMG00000004013 uc010oho.3 AK074486 NM_153341 "CCDS372|CCDS44107|CCDS72754" Q6ZMZ0 12477932 MGI:1922484 RGD:1305470 RNF19B 610872 +HGNC:38484 RNF19BPX ring finger protein 19B pseudogene, X-linked pseudogene pseudogene Approved Xq21.31 Xq21.31 RNF19BX 2010-05-11 2014-11-18 100419788 ENSG00000227434 OTTHUMG00000040023 NG_022619 PGOHUM00000241439 +HGNC:38398 RNF19BPY ring finger protein 19B pseudogene, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-05-11 2014-11-19 100419722 ENSG00000225653 OTTHUMG00000036180 NG_021906 PGOHUM00000233666 +HGNC:10062 RNF20 ring finger protein 20 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "FLJ20382|FLJ11189|KAIA2779|BRE1A|hBRE1|BRE1" BRE1 E3 ubiquitin ligase homolog (S. cerevisiae) "ring finger protein 20|ring finger protein 20, E3 ubiquitin protein ligase" Ring finger proteins 58 2000-05-23 2008-12-12 2015-11-27 2016-10-05 56254 ENSG00000155827 OTTHUMG00000020385 uc004bbn.5 AF265230 NM_019592 CCDS35084 Q5VTR2 "16337599|12876294|18832071|19037095" MGI:1925927 RGD:1311936 RNF20 607699 +HGNC:13779 RNF24 ring finger protein 24 protein-coding gene gene with protein product Approved 20p13 20p13 G1L Ring finger proteins 58 2000-10-25 2015-08-25 11237 ENSG00000101236 OTTHUMG00000031770 uc002wkh.4 AF151081 NM_007219 "CCDS13074|CCDS46577" Q9Y225 MGI:1261771 RGD:1309384 RNF24 612489 +HGNC:14662 RNF25 ring finger protein 25 protein-coding gene gene with protein product Approved 2q35 02q35 "AO7|FLJ13906" Ring finger proteins 58 2001-02-21 2014-11-19 64320 ENSG00000163481 OTTHUMG00000133077 uc002vit.4 NM_022453 CCDS2420 Q96BH1 12748188 MGI:1890215 RGD:1311557 RNF25 616014 +HGNC:14646 RNF26 ring finger protein 26 protein-coding gene gene with protein product Approved 11q23 11q23 MGC2642 ring finger protein with leucine zipper Ring finger proteins 58 2001-02-21 2014-11-19 79102 ENSG00000173456 OTTHUMG00000166171 uc001pwh.4 AB055622 NM_032015 CCDS8419 Q9BY78 11352657 MGI:2388131 RGD:1305953 RNF26 606130 +HGNC:16031 RNF31 ring finger protein 31 protein-coding gene gene with protein product Approved 14q12 14q12 "ZIBRA|FLJ10111|FLJ23501|HOIP" HOIL-1-interacting protein "Ring finger proteins|Zinc fingers RANBP2-type " "58|89" 2003-09-29 2016-10-05 55072 ENSG00000092098 OTTHUMG00000028798 uc001wmn.2 AK000973 NM_017999 "CCDS41931|CCDS81792" Q96EP0 10422847 MGI:1934704 RGD:1305513 RNF31 612487 432144 +HGNC:17118 RNF32 ring finger protein 32 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "FKSG33|HSD15|LMBR2" Ring finger proteins 58 2001-12-10 2016-10-05 140545 ENSG00000105982 OTTHUMG00000151440 uc010lqm.4 NM_030936 "CCDS5944|CCDS78292|CCDS78293" Q9H0A6 11890671 MGI:1861747 RGD:1308287 RNF32 610241 +HGNC:17297 RNF34 ring finger protein 34 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "RIFF|FLJ21786|RIF" ring finger protein 34, E3 ubiquitin protein ligase Ring finger proteins 58 2001-12-03 2016-03-11 2016-03-11 80196 ENSG00000170633 OTTHUMG00000171524 uc001uak.3 "AF306709|AB084914" NM_194271 "CCDS9221|CCDS31915|CCDS73538" Q969K3 12118383 MGI:2153340 RGD:628636 RNF34 608299 +HGNC:18052 RNF38 ring finger protein 38 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 Ring finger proteins 58 2002-01-23 2016-10-05 152006 ENSG00000137075 OTTHUMG00000019905 uc003zzm.5 NM_022781 "CCDS6603|CCDS6604" Q9H0F5 MGI:1920719 RGD:621856 RNF38 612488 +HGNC:18064 RNF39 ring finger protein 39 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "HZFw1|LIRF" Ring finger proteins 58 2003-04-25 2016-10-05 80352 ENSG00000204618 OTTHUMG00000031288 uc003npe.4 AF238315 NM_170769 "CCDS4673|CCDS4674" Q9H2S5 "11130983|11716498" MGI:2156378 RGD:628854 RNF39 607524 +HGNC:16867 RNF40 ring finger protein 40 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "KIAA0661|RBP95|BRE1B|STARING" BRE1 E3 ubiquitin ligase homolog B (S. cerevisiae) "ring finger protein 40|ring finger protein 40, E3 ubiquitin protein ligase" Ring finger proteins 58 2002-02-15 2016-03-22 2016-10-05 9810 ENSG00000103549 OTTHUMG00000132394 uc002dzq.4 AB014561 NM_014771 "CCDS10691|CCDS55994" O75150 "9734811|10944455|12121982" MGI:2142048 RGD:628638 RNF40 607700 +HGNC:18401 RNF41 ring finger protein 41 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "SBBI03|NRDP1" ring finger protein 41, E3 ubiquitin protein ligase Ring finger proteins 58 2003-05-21 2016-03-11 2016-10-05 10193 ENSG00000181852 OTTHUMG00000170328 uc001skf.3 AF077599 NM_005785 "CCDS8909|CCDS8910" Q9H4P4 MGI:1914838 RGD:1309557 RNF41 +HGNC:18505 RNF43 ring finger protein 43 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 "FLJ20315|DKFZp781H0392|URCC" Ring finger proteins 58 2002-04-18 2016-10-12 54894 ENSG00000108375 OTTHUMG00000179077 uc002iwh.6 NM_017763 "CCDS11607|CCDS82172" Q68DV7 MGI:2442609 RGD:1305204 LRG_1026|http://www.lrg-sequence.org/LRG/LRG_1026 RNF43 612482 456689 +HGNC:19180 RNF44 ring finger protein 44 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 KIAA1100 Ring finger proteins 58 2002-09-02 2016-10-05 22838 ENSG00000146083 OTTHUMG00000130664 uc003mek.2 AB029023 XM_005265840 CCDS4404 Q7L0R7 10470851 MGI:2145310 RGD:1307212 RNF44 +HGNC:12859 RNF103 ring finger protein 103 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "hkf-1|KF1" ZFP103 zinc finger protein 103 homolog (mouse) Ring finger proteins 58 1998-10-30 2003-05-16 2003-05-14 2014-11-19 7844 ENSG00000239305 OTTHUMG00000153197 uc002srn.4 D76444 NM_005667 CCDS33237 O00237 9070305 MGI:109483 RGD:620586 RNF103 602507 +HGNC:38847 RNF103-CHMP3 RNF103-CHMP3 readthrough other readthrough Approved 2p11.2 02p11.2 RNF103-VPS24 RNF103-VPS24 readthrough 2011-02-21 2011-10-20 2011-10-20 2014-11-19 100526767 ENSG00000249884 OTTHUMG00000160822 uc010ytl.3 NM_001198954.1 CCDS56128 +HGNC:17384 RNF111 ring finger protein 111 protein-coding gene gene with protein product Approved 15q22.1-q22.2 15q22.1-q22.2 "ARK|Arkadia|FLJ38008|DKFZP761D081" Ring finger proteins 58 2003-05-14 2016-10-11 54778 ENSG00000157450 OTTHUMG00000132716 uc002afs.5 AL157474 NM_017610 "CCDS10169|CCDS58365|CCDS58366|CCDS81888" Q6ZNA4 11298452 MGI:1934919 RGD:1310097 RNF111 605840 +HGNC:12968 RNF112 ring finger protein 112 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 BFP neurolastin ZNF179 zinc finger protein 179 Ring finger proteins 58 1995-10-17 2008-06-13 2008-06-13 2015-11-27 7732 ENSG00000128482 OTTHUMG00000059601 uc010vyw.3 AF054587 NM_007148 CCDS58529 Q9ULX5 "8660987|9806830|26212327" MGI:106611 RGD:3986 RNF112 601237 +HGNC:12974 RNF113A ring finger protein 113A protein-coding gene gene with protein product Approved Xq24 Xq24 "RNF113|Cwc24" ZNF183 zinc finger protein 183 (RING finger, C3HC4 type) Ring finger proteins 58 1996-10-18 2005-03-22 2005-03-22 2014-11-19 7737 ENSG00000125352 OTTHUMG00000022283 uc004esb.4 X98253 NM_006978 CCDS14589 O15541 9224902 MGI:1917192 RGD:1359693 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RNF113A RNF113A 300951 430986 +HGNC:17267 RNF113B ring finger protein 113B protein-coding gene gene with protein product Approved 13q32.2 13q32.2 RNF161 ZNF183L1 zinc finger protein 183-like 1 Ring finger proteins 58 2001-12-07 2005-03-22 2005-03-22 2015-09-09 140432 ENSG00000139797 OTTHUMG00000017245 uc001vnk.4 AF539427 NM_178861 CCDS9486 Q8IZP6 RNF113B +HGNC:13094 RNF114 ring finger protein 114 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 PSORS12 ZNF313 zinc finger protein 313 Ring finger proteins 58 2000-07-31 2008-06-16 2008-06-16 2016-10-05 55905 ENSG00000124226 OTTHUMG00000032709 uc002xux.4 AF265215 NM_018683 CCDS33482 Q9Y508 18364390 MGI:1933159 RGD:1303139 RNF114 612451 +HGNC:18154 RNF115 ring finger protein 115 protein-coding gene gene with protein product Approved 1q21.1 01q21.1 CL469780 ZNF364 zinc finger protein 364 Ring finger proteins 58 2002-02-15 2008-06-16 2008-06-16 2016-10-05 27246 ENSG00000265491 OTTHUMG00000013758 uc031utf.2 AF419857 NM_014455 CCDS72863 Q9Y4L5 MGI:1915095 RGD:1305315 RNF115 +HGNC:21070 RNF121 ring finger protein 121 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 FLJ11099 Ring finger proteins 58 2003-05-14 2016-10-05 55298 ENSG00000137522 OTTHUMG00000157023 uc001ora.4 AK001961 NM_018320 "CCDS8203|CCDS73343" Q9H920 MGI:1922462 RGD:1307857 RNF121 +HGNC:21147 RNF122 ring finger protein 122 protein-coding gene gene with protein product Approved 8p12 08p12 FLJ12526 Ring finger proteins 58 2003-05-21 2014-11-19 79845 ENSG00000133874 OTTHUMG00000163960 uc003xjo.3 AK022588 NM_024787 CCDS6091 Q9H9V4 MGI:1916117 RGD:1561238 RNF122 +HGNC:21148 RNF123 ring finger protein 123 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "FLJ12565|KPC1" Kip1 ubiquitination-promoting complex subunit 1 Ring finger proteins 58 2003-05-21 2016-10-05 63891 ENSG00000164068 OTTHUMG00000156891 uc003cxh.5 AK022627 NM_022064 CCDS33758 Q5XPI4 15531880 MGI:2148796 RGD:2301394 RNF123 614472 +HGNC:21150 RNF125 ring finger protein 125 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 FLJ20456 ring finger protein 125, E3 ubiquitin protein ligase Ring finger proteins 58 2003-05-21 2016-06-07 2016-06-07 54941 ENSG00000101695 OTTHUMG00000132266 uc002kxf.2 AK000463 NM_017831 CCDS11902 Q96EQ8 MGI:1914914 RGD:1306757 RNF125 610432 +HGNC:21151 RNF126 ring finger protein 126 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ20552 Ring finger proteins 58 2003-05-21 2014-11-19 55658 ENSG00000070423 OTTHUMG00000180592 uc010drs.5 BC025374 NM_017876 CCDS12039 Q9BV68 MGI:1917544 RGD:1306011 RNF126 615177 +HGNC:30340 RNF126P1 ring finger protein 126 pseudogene 1 pseudogene pseudogene Approved 17q23.2 17q23.2 Ring finger proteins 58 2004-04-22 2004-04-22 376412 ENSG00000261192 OTTHUMG00000176069 BC033555 NR_002818 12477932 +HGNC:21153 RNF128 ring finger protein 128, E3 ubiquitin protein ligase protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "FLJ23516|GRAIL" ring finger protein 128 Ring finger proteins 58 2003-05-21 2012-02-23 2015-08-25 79589 ENSG00000133135 OTTHUMG00000022151 uc004eml.4 AK027169 NM_024539 "CCDS14520|CCDS14521" Q8TEB7 MGI:1914139 RGD:1566282 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RNF128 RNF128 300439 +HGNC:18280 RNF130 ring finger protein 130 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "GP|G1RZFP|GOLIATH" Ring finger proteins 58 2003-05-21 2015-08-25 55819 ENSG00000113269 OTTHUMG00000130909 uc003mll.2 AF155650 NM_018434 "CCDS4451|CCDS64340" Q86XS8 10806348 MGI:1891717 RGD:1562041 RNF130 +HGNC:21154 RNF133 ring finger protein 133 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 Ring finger proteins 58 2003-05-21 2016-10-05 168433 ENSG00000188050 OTTHUMG00000157092 uc003vkj.2 AF447589 NM_139175 CCDS5784 Q8WVZ7 MGI:2677436 RGD:1596695 RNF133 +HGNC:21158 RNF135 ring finger protein 135 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 MGC13061 riplet Ring finger proteins 58 2003-05-21 2015-08-25 84282 ENSG00000181481 OTTHUMG00000132867 uc002hfz.4 AJ496729 NM_032322 "CCDS11262|CCDS11263|CCDS54104" Q8IUD6 "11468690|19017631" MGI:1919206 RGD:1305252 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=RNF135 RNF135 611358 140074 +HGNC:17765 RNF138 ring finger protein 138 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 "STRIN|NARF" nemo-like kinase associated ring finger protein ring finger protein 138, E3 ubiquitin protein ligase Ring finger proteins 58 2003-05-21 2016-04-05 2016-04-05 51444 ENSG00000134758 OTTHUMG00000132265 uc002kxg.3 AF162680 NM_016271 "CCDS11903|CCDS11904" Q8WVD3 "22155992|16714285" MGI:1929211 RGD:621485 RNF138 616319 +HGNC:30342 RNF138P1 ring finger protein 138 pseudogene 1 pseudogene pseudogene Approved 5q11.2 05q11.2 ring finger protein 138, E3 ubiquitin protein ligase pseudogene 1 Ring finger proteins 58 2004-04-22 2016-04-05 2016-04-05 379013 ENSG00000250853 OTTHUMG00000162239 AC025777 NR_001575 12477932 PGOHUM00000235223 +HGNC:50775 RNF138P2 ring finger protein 138 pseudogene 2 pseudogene pseudogene Approved 7p12.1 07p12.1 ring finger protein 138, E3 ubiquitin protein ligase pseudogene 2 2014-06-18 2016-04-05 2016-04-05 100419777 ENSG00000271194 OTTHUMG00000184469 NG_026566 PGOHUM00000263179 +HGNC:17023 RNF139 ring finger protein 139 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "TRC8|RCA1|HRCA1" Ring finger proteins 58 2003-05-21 2016-10-05 11236 ENSG00000170881 OTTHUMG00000165072 uc003yrc.4 AF064801 NM_007218 CCDS6350 Q8WU17 9689122 MGI:1923091 RGD:1306670 RNF139 603046 118347 +HGNC:48940 RNF139-AS1 RNF139 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 8q24.13 08q24.13 2013-07-17 2013-07-17 2014-11-18 101927612 ENSG00000245149 OTTHUMG00000165073 AA905116 NR_108047 +HGNC:21159 RNF141 ring finger protein 141 protein-coding gene gene with protein product Approved 11p15.3 11p15.3 "ZFP26|ZNF230" Ring finger proteins 58 2003-05-21 2015-08-25 50862 ENSG00000110315 OTTHUMG00000165712 uc001mis.2 AF214680 NM_016422 CCDS7803 Q8WVD5 11672448 MGI:1914400 RGD:1303154 RNF141 616641 +HGNC:20457 RNF144A ring finger protein 144A protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "UBCE7IP4|KIAA0161" RNF144 ring finger protein 144 Ring finger proteins 58 2003-02-18 2007-08-20 2007-08-20 2016-10-05 9781 ENSG00000151692 OTTHUMG00000090353 uc002qys.4 D79983 NM_014746 CCDS1657 P50876 "8724849|10431818" MGI:1344401 RGD:1561737 RNF144A +HGNC:30963 RNF144A-AS1 RNF144A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p25.1 02p25.1 RNF144A antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2016-10-05 386597 ENSG00000228203 OTTHUMG00000151701 uc002qyq.3 NR_033997 +HGNC:21578 RNF144B ring finger protein 144B protein-coding gene gene with protein product Approved 6p22.3 06p22.3 bA528A10.3 IBRDC2 IBR domain containing 2 Ring finger proteins 58 2003-06-25 2007-08-20 2009-01-05 2014-11-19 255488 ENSG00000137393 OTTHUMG00000014322 uc003ncs.3 AK096832 XM_172581 CCDS34345 Q7Z419 MGI:2384986 RGD:1308856 RNF144B +HGNC:20853 RNF145 ring finger protein 145 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 FLJ31951 Ring finger proteins 58 2003-05-08 2014-11-18 153830 ENSG00000145860 OTTHUMG00000130306 uc010jiq.3 BC042684 NM_144726 "CCDS4344|CCDS56390|CCDS56391|CCDS56392|CCDS56393" Q96MT1 MGI:1921565 RGD:1309561 RNF145 +HGNC:21336 RNF146 ring finger protein 146 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 "DKFZp434O1427|dactylidin|dJ351K20.1" Ring finger proteins 58 2003-11-26 2016-10-05 81847 ENSG00000118518 OTTHUMG00000015522 uc003qav.4 AK027558 NM_030963 "CCDS5136|CCDS56449" Q9NTX7 MGI:1915281 RGD:1306482 RNF146 612137 +HGNC:22411 RNF148 ring finger protein 148 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 MGC35222 Ring finger proteins 58 2003-10-24 2016-10-05 378925 ENSG00000235631 OTTHUMG00000157099 uc003vkk.2 BC029264 NM_198085 CCDS47692 Q8N7C7 8744354 MGI:1918550 RGD:1595417 RNF148 +HGNC:23137 RNF149 ring finger protein 149 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 FLJ90504 Ring finger proteins 58 2003-10-24 2016-10-05 284996 ENSG00000163162 OTTHUMG00000130685 uc002taz.3 AK074985 NM_173647 CCDS2051 Q8NC42 MGI:2677438 RGD:1308460 RNF149 +HGNC:23138 RNF150 ring finger protein 150 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 KIAA1214 Ring finger proteins 58 2003-10-24 2016-10-05 57484 ENSG00000170153 OTTHUMG00000161380 uc062zuo.1 AB033040 XM_291090 CCDS34065 Q9ULK6 10574462 MGI:2443860 RGD:1304572 RNF150 +HGNC:23235 RNF151 ring finger protein 151 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Ring finger proteins 58 2003-10-24 2015-08-25 146310 ENSG00000179580 OTTHUMG00000176852 uc002cnt.1 BC029501 NM_174903 CCDS58405 Q2KHN1 12477932 MGI:1914754 RGD:1309302 RNF151 +HGNC:26811 RNF152 ring finger protein 152 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 FLJ39176 Ring finger proteins 58 2003-12-15 2015-08-25 220441 ENSG00000176641 OTTHUMG00000132774 uc002lih.2 AK096495 NM_173557 CCDS11978 Q8N8N0 MGI:2443787 RGD:1305251 RNF152 616512 +HGNC:49743 RNF152P1 ring finger protein 152 pseudogene 1 pseudogene pseudogene Approved 9p24.1 09p24.1 2014-02-13 2014-02-13 100419687 ENSG00000214190 OTTHUMG00000019499 NG_023780 PGOHUM00000235955 +HGNC:29402 RNF157 ring finger protein 157 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 KIAA1917 Ring finger proteins 58 2004-02-27 2016-10-05 114804 ENSG00000141576 OTTHUMG00000132627 uc002jqz.4 AK091467 XM_290732 "CCDS32740|CCDS82208" Q96PX1 11572484 MGI:2442484 RGD:1591154 RNF157 +HGNC:44127 RNF157-AS1 RNF157 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q25.1 17q25.1 RNF157 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100507218 AK093500 NR_040017 +HGNC:31696 RNF165 ring finger protein 165 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "ARKL2|RNF111L2" Ring finger proteins 58 2005-01-07 2015-03-03 494470 ENSG00000141622 OTTHUMG00000179230 uc002lcb.2 BC012190 NM_152470 "CCDS32823|CCDS58621" Q6ZSG1 MGI:2444521 RGD:1560744 RNF165 +HGNC:26612 RNF165-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-12 +HGNC:28856 RNF166 ring finger protein 166 protein-coding gene gene with protein product Approved 16q24.2-q24.3 16q24.2-q24.3 "MGC2647|MGC14381" Ring finger proteins 58 2004-06-04 2016-10-11 115992 ENSG00000158717 OTTHUMG00000137863 uc002flk.3 AK057106 NM_178841 "CCDS10969|CCDS54056|CCDS54057" Q96A37 12477932 MGI:1915968 RGD:1302950 RNF166 +HGNC:24544 RNF167 ring finger protein 167 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 DKFZP566H073 Ring finger proteins 58 2004-07-29 2016-10-05 26001 ENSG00000108523 OTTHUMG00000099397 uc059zxj.1 AL050060 NM_015528 "CCDS11060|CCDS82040" Q9H6Y7 "23129617|23353890" MGI:1917760 RGD:1305972 RNF167 610431 +HGNC:26661 RNF168 ring finger protein 168 protein-coding gene gene with protein product Approved 3q29 03q29 FLJ35794 ring finger protein 168, E3 ubiquitin protein ligase Ring finger proteins 58 2005-01-25 2016-04-04 2016-10-12 165918 ENSG00000163961 OTTHUMG00000155582 uc003fwq.4 AK054732 NM_152617 CCDS3317 Q8IYW5 12477932 MGI:1917488 RGD:1585168 LRG_185|http://www.lrg-sequence.org/LRG/LRG_185 RNF168 612688 432037 +HGNC:26961 RNF169 ring finger protein 169 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 KIAA1991 Ring finger proteins 58 2005-09-13 2014-11-19 254225 ENSG00000166439 OTTHUMG00000165516 uc001ovl.4 AB082522 XM_495886 CCDS41691 Q8NCN4 12056414 MGI:1920257 RGD:1583288 RNF169 +HGNC:25358 RNF170 ring finger protein 170 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "DKFZP564A022|ADSA" SNAX1 sensory ataxia 1 (autosomal dominant) Ring finger proteins 58 2005-01-26 2015-08-25 81790 ENSG00000120925 OTTHUMG00000165277 uc003xpo.4 AL136620 NM_030954 "CCDS6138|CCDS55229|CCDS55230" Q96K19 "11230166|21115467" MGI:1924983 RGD:1590842 RNF170 614649 +HGNC:27735 RNF175 ring finger protein 175 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 FLJ34190 Ring finger proteins 58 2005-01-26 2015-09-07 285533 ENSG00000145428 OTTHUMG00000161557 uc003int.4 BC034385 NM_173662 CCDS47149 Q8N4F7 RGD:7713747 RNF175 +HGNC:27752 RNF180 ring finger protein 180 protein-coding gene gene with protein product Approved 5q12.3 05q12.3 Ring finger proteins 58 2005-01-26 2014-11-19 285671 ENSG00000164197 OTTHUMG00000162278 uc003jti.4 AK090756 NM_178532 "CCDS34169|CCDS47219" Q86T96 MGI:1919066 RGD:1595064 RNF180 616015 +HGNC:28037 RNF181 ring finger protein 181 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 HSPC238 Ring finger proteins 58 2007-06-19 2014-11-19 51255 ENSG00000168894 OTTHUMG00000130182 uc002spv.2 AF151072 NM_016494 CCDS1981 Q9P0P0 11042152 MGI:1913760 RGD:1359698 RNF181 612490 +HGNC:28522 RNF182 ring finger protein 182 protein-coding gene gene with protein product Approved 6p23 06p23 MGC33993 Ring finger proteins 58 2005-01-26 2013-01-09 221687 ENSG00000180537 OTTHUMG00000014280 uc021ylw.2 AK090576 NM_152737 CCDS4531 Q8N6D2 12477932 MGI:3045355 RGD:1560399 RNF182 +HGNC:28721 RNF183 ring finger protein 183 protein-coding gene gene with protein product Approved 9q32 09q32 MGC4734 Ring finger proteins 58 2005-03-28 2015-08-25 138065 ENSG00000165188 OTTHUMG00000020520 uc004bha.4 NM_145051 CCDS43866 Q96D59 12477932 MGI:1923322 RGD:1564412 RNF183 +HGNC:26783 RNF185 ring finger protein 185 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 FLJ38628 hypothetical protein FLJ38628 Ring finger proteins 58 2005-03-31 2015-08-25 91445 ENSG00000138942 OTTHUMG00000151253 uc003akb.4 NM_152267 "CCDS13890|CCDS46689" Q96GF1 12477932 MGI:1922078 RGD:1564777 RNF185 +HGNC:41161 RNF185-AS1 RNF185 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q12.2 22q12.2 RNF185 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100852405 ENSG00000254835 OTTHUMG00000166845 uc003akf.2 BC069286 +HGNC:25978 RNF186 ring finger protein 186 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 FLJ20225 hypothetical protein FLJ20225 Ring finger proteins 58 2005-03-31 2014-11-19 54546 ENSG00000178828 OTTHUMG00000002709 uc001bcr.3 NM_019062 CCDS199 Q9NXI6 12477932 MGI:1914075 RGD:1596075 RNF186 +HGNC:27146 RNF187 ring finger protein 187 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 Ring finger proteins 58 2005-06-03 2005-08-09 2015-08-25 149603 ENSG00000168159 OTTHUMG00000040043 uc057qfa.1 BC008022 NM_001010858 CCDS76271 Q5TA31 12477932 MGI:1914224 RGD:1308636 RNF187 613754 +HGNC:32947 RNF207 ring finger protein 207 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "FLJ46380|FLJ32096" OTTHUMG00000001089 C1orf188 chromosome 1 open reading frame 188 Ring finger proteins 58 2006-07-04 2015-08-25 388591 ENSG00000158286 OTTHUMG00000001089 uc001amg.4 AK128246 NM_207396 CCDS59 Q6ZRF8 MGI:2684989 RGD:1586262 RNF207 616923 +HGNC:25420 RNF208 ring finger protein 208 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 DKFZP761H1710 Ring finger proteins 58 2007-01-19 2014-11-19 727800 ENSG00000212864 OTTHUMG00000131782 uc064xks.1 AF416715 NM_031297 CCDS7037 Q9H0X6 11230166 MGI:1916096 RGD:1565957 RNF208 +HGNC:27729 RNF212 ring finger protein 212 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 FLJ38841 LOC285498 hypothetical protein LOC285498 Ring finger proteins 58 2007-01-19 2007-01-19 2007-01-19 2014-11-18 285498 ENSG00000178222 OTTHUMG00000118997 uc003gci.4 AK096160 NM_194439 "CCDS3345|CCDS46996|CCDS54704" Q495C1 23396135 MGI:3645767 RGD:1588767 RNF212 612041 +HGNC:20438 RNF212B ring finger protein 212B protein-coding gene gene with protein product Approved 14q11.2 14q11.2 C14orf164 chromosome 14 open reading frame 164 Ring finger proteins 58 2003-09-25 2014-06-05 2014-06-05 2015-09-09 100507650 ENSG00000215277 OTTHUMG00000149918 XM_011536313 CCDS61401 A8MTL3 MGI:5589964 RGD:7500178 +HGNC:14539 RNF213 ring finger protein 213 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "KIAA1554|NET57" "C17orf27|KIAA1618|MYMY2" "chromosome 17 open reading frame 27|KIAA1618|moyamoya disease 2|Moyamoya disease 2" Ring finger proteins 58 2001-03-05 2007-02-08 2007-02-08 2015-09-07 57674 ENSG00000173821 OTTHUMG00000161415 uc021uen.3 AK074030 NM_020914 CCDS58606 Q63HN8 "10997877|21048783|21799892" MGI:1289196 RGD:1308168 RNF213 613768 260602 +HGNC:25335 RNF214 ring finger protein 214 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 DKFZp547C195 Ring finger proteins 58 2007-02-16 2007-02-16 2014-11-18 257160 ENSG00000167257 OTTHUMG00000167069 uc001pqt.5 AL834448 NM_001077239 "CCDS41720|CCDS60976" Q8ND24 MGI:2444451 RGD:1307500 RNF214 +HGNC:33434 RNF215 ring finger protein 215 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 Ring finger proteins 58 2007-04-12 2014-11-19 200312 ENSG00000099999 OTTHUMG00000151016 uc003ahp.4 NM_001017981 CCDS33633 Q9Y6U7 MGI:1918923 RGD:1310738 RNF215 +HGNC:21698 RNF216 ring finger protein 216 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "TRIAD3|UBCE7IP1|ZIN" Ring finger proteins 58 2007-08-20 2007-08-20 2014-11-19 54476 ENSG00000011275 OTTHUMG00000155500 uc003sox.3 AY062174 NM_207111 "CCDS34594|CCDS34595" Q9NWF9 MGI:1344349 RGD:1565135 RNF216 609948 357214 +HGNC:41463 RNF216-IT1 RNF216 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 7p22.1 07p22.1 RNF216 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874342 ENSG00000237738 OTTHUMG00000155498 uc031swm.1 NR_046834 +HGNC:33610 RNF216P1 ring finger protein 216 pseudogene 1 pseudogene pseudogene Approved 7p22.1 07p22.1 RNF216L ring finger protein 216-like 2007-08-20 2011-09-15 2011-09-15 2014-11-18 441191 ENSG00000196204 OTTHUMG00000151797 AK124529 XM_001126561 Q6NUR6 PGOHUM00000260295 +HGNC:21487 RNF217 ring finger protein 217 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "MGC26996|dJ84N20.1" "C6orf172|IBRDC1" "chromosome 6 open reading frame 172|IBR domain containing 1" Ring finger proteins 58 2003-06-17 2007-08-20 2007-08-20 2016-10-05 154214 ENSG00000146373 OTTHUMG00000015504 uc003pzr.5 BC026087 NM_152553 "CCDS5129|CCDS69191" Q8TC41 MGI:3610311 RGD:1306836 RNF217 +HGNC:50866 RNF217-AS1 RNF217 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 6q22.31 06q22.31 STL six-twelve leukemia 2014-07-10 2014-07-15 7955 ENSG00000236548 OTTHUMG00000015501 NR_026876 9087565 602532 +HGNC:20308 RNF219 ring finger protein 219 protein-coding gene gene with protein product Approved 13q31.1 13q31.1 FLJ13449 C13orf7 chromosome 13 open reading frame 7 Ring finger proteins 58 2003-01-24 2008-03-26 2008-03-26 2014-11-19 79596 ENSG00000152193 OTTHUMG00000017122 uc001vkw.2 BC028586 NM_024546 CCDS31997 Q5W0B1 MGI:1919736 RGD:1564706 RNF219 615906 +HGNC:42700 RNF219-AS1 RNF219 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q22.3-q31.1 13q22.3-q31.1 POU4F1-AS1 POU4F1 antisense RNA 1 2011-08-16 2013-02-22 2013-02-22 2016-10-11 100874222 ENSG00000234377 OTTHUMG00000185746 uc001vks.3 NR_047001 +HGNC:25552 RNF220 ring finger protein 220 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 FLJ10597 C1orf164 chromosome 1 open reading frame 164 Ring finger proteins 58 2005-07-18 2008-06-13 2008-06-13 2014-11-18 55182 ENSG00000187147 OTTHUMG00000007697 uc001clw.2 AK056424 NM_018150 CCDS510 Q5VTB9 11042152 MGI:1913993 RGD:1598210 RNF220 616136 +HGNC:34517 RNF222 ring finger protein 222 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 Ring finger proteins 58 2008-08-14 2015-08-25 643904 ENSG00000189051 OTTHUMG00000132049 uc010vuy.2 NM_001146684.2 CCDS45608 A6NCQ9 MGI:2443227 RGD:1310573 RNF222 +HGNC:40020 RNF223 ring finger protein 223 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 Ring finger proteins 58 2011-05-05 2015-09-09 401934 ENSG00000237330 OTTHUMG00000185582 uc021oen.2 NM_001205252 CCDS53257 E7ERA6 MGI:3588193 RGD:1587009 RNF223 +HGNC:41912 RNF224 ring finger protein 224 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 Ring finger proteins 58 2011-05-23 2015-09-07 643596 ENSG00000233198 OTTHUMG00000187399 uc022bqe.2 BX255925 NM_001190228 CCDS55356 P0DH78 MGI:2685603 RGD:1564535 RNF224 +HGNC:51249 RNF225 ring finger protein 225 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 2014-10-08 2015-09-07 646862 ENSG00000269855 OTTHUMG00000189258 XM_006723328 CCDS74477 M0QZC1 MGI:1924198 RGD:1561909 +HGNC:30206 RNFT1 ring finger protein, transmembrane 1 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 PTD016 Ring finger proteins 58 2008-02-26 2016-10-05 51136 ENSG00000189050 OTTHUMG00000148658 uc002iya.4 BC006971 NM_016125 CCDS11622 Q5M7Z0 12477932 MGI:1924142 RGD:1562411 RNFT1 615172 +HGNC:44387 RNFT1P1 ring finger protein, transmembrane 1 pseudogene 1 pseudogene pseudogene Approved 2p24.1 02p24.1 2012-09-17 2012-09-17 100420886 NG_023550 PGOHUM00000239983 +HGNC:44388 RNFT1P2 ring finger protein, transmembrane 1 pseudogene 2 pseudogene pseudogene Approved 1p31.1 01p31.1 2012-09-17 2012-09-17 100132264 ENSG00000233333 OTTHUMG00000041117 NG_022725 PGOHUM00000244076 +HGNC:44389 RNFT1P3 ring finger protein, transmembrane 1 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2012-09-17 2012-09-17 101929203 ENSG00000187870 OTTHUMG00000059553 NG_046381 PGOHUM00000259168 +HGNC:25905 RNFT2 ring finger protein, transmembrane 2 protein-coding gene gene with protein product Approved 12q24.22 12q24.22 FLJ14627 TMEM118 transmembrane protein 118 Ring finger proteins 58 2006-01-23 2008-02-26 2008-02-26 2014-11-19 84900 ENSG00000135119 OTTHUMG00000150882 uc009zwn.4 AK027533 NM_032814 "CCDS9180|CCDS44987" Q96EX2 12477932 MGI:2442859 RGD:1560195 RNFT2 +HGNC:10073 RNGTT RNA guanylyltransferase and 5'-phosphatase protein-coding gene gene with protein product Approved 6q15 06q15 "HCE|HCE1|hCAP" Atypical dual specificity phosphatases 896 1998-09-22 2016-10-05 8732 ENSG00000111880 OTTHUMG00000015190 uc003pmr.4 AF025654 NM_003800 "CCDS5017|CCDS69153" O60942 "9828141|9512541" MGI:1329041 RGD:1311410 RNGTT 603512 "2.7.7.50|3.1.3.33" +HGNC:39652 RNGTTP1 RNA guanylyltransferase and 5'-phosphatase pseudogene 1 pseudogene pseudogene Approved 21q21.3 21q21.3 2011-03-18 2011-03-18 100421428 ENSG00000237731 OTTHUMG00000155486 NG_025063 PGOHUM00000239158 +HGNC:10074 RNH1 ribonuclease/angiogenin inhibitor 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 RAI RNH ribonuclease/angiogenin inhibitor 1990-02-24 2005-06-01 2005-06-01 2015-08-25 6050 ENSG00000023191 OTTHUMG00000119086 uc001lpq.3 NM_203389 CCDS7697 P13489 MGI:1195456 RGD:621398 RNH1 173320 +HGNC:25641 RNLS renalase, FAD dependent amine oxidase protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "FLJ11218|renalase" C10orf59 chromosome 10 open reading frame 59 2004-05-27 2009-04-22 2016-06-08 2016-06-08 55328 ENSG00000184719 OTTHUMG00000018692 uc001kfe.4 BC005364 NM_018363 "CCDS7388|CCDS31239" Q5VYX0 "15841207|17565281" MGI:1915045 RGD:1309804 RNLS 609360 +HGNC:10075 RNMT RNA guanine-7 methyltransferase protein-coding gene gene with protein product Approved 18p11.21 18p11.21 RG7MT1 mRNA cap guanine-N7 methyltransferase RNA (guanine-7-) methyltransferase 1998-09-22 2016-04-06 2016-04-06 8731 ENSG00000101654 OTTHUMG00000131718 uc002ksl.2 AF067791 NM_003799 "CCDS11867|CCDS77156" O43148 "9828141|9705270" MGI:1915147 RGD:1309242 RNMT 603514 2.1.1.56 +HGNC:44905 RNMTL1P1 RNA methyltransferase like 1 pseudogene 1 pseudogene pseudogene Approved 10p12.31 10p12.31 2012-12-18 2012-12-18 100420295 ENSG00000231553 OTTHUMG00000017793 NG_025475 PGOHUM00000238693 +HGNC:44906 RNMTL1P2 RNA methyltransferase like 1 pseudogene 2 pseudogene pseudogene Approved 7p21.1 07p21.1 2012-12-18 2012-12-18 100420223 ENSG00000236195 OTTHUMG00000152741 NG_026539 PGOHUM00000233140 +HGNC:10077 RNNL entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-09-03 +HGNC:18666 RNPC3 RNA binding region (RNP1, RRM) containing 3 protein-coding gene gene with protein product Approved 1p21.1 01p21.1 "KIAA1839|FLJ20008|RBM40|SNRNP65" U11/U12 snRNP 65K RNA binding motif containing 725 2002-09-17 2015-11-05 2015-11-05 55599 ENSG00000185946 OTTHUMG00000166613 uc057isu.1 "AB058742|AY099329" NM_017619 CCDS781 Q96LT9 "14974681|15146077" MGI:1914475 RGD:1582776 RNPC3 402549 +HGNC:47036 RNPC3P1 RNA binding region (RNP1, RRM) containing 3 pseudogene 1 pseudogene pseudogene Approved 3p13 03p13 2013-04-04 2015-11-05 2015-11-05 654340 NG_022206 PGOHUM00000237647 +HGNC:10078 RNPEP arginyl aminopeptidase protein-coding gene gene with protein product Approved 1q32.1 01q32.1 aminopeptidase B arginyl aminopeptidase (aminopeptidase B) Aminopeptidases 104 1993-04-15 2016-01-25 2016-10-05 6051 ENSG00000176393 OTTHUMG00000035866 uc001gxd.4 BC001064 NM_020216 CCDS1418 Q9H4A4 "9533033|10467730" MGI:2384902 RGD:621137 RNPEP 602675 M01.014 objectId:1564 3.4.11.6 +HGNC:10079 RNPEPL1 arginyl aminopeptidase like 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 aminopeptidase B-like 1 arginyl aminopeptidase (aminopeptidase B)-like 1 2000-09-01 2016-06-27 2016-07-29 57140 ENSG00000142327 OTTHUMG00000133357 uc061uih.1 NM_018226 Q9HAU8 19508204 MGI:1914170 RGD:1595210 RNPEPL1 605287 M01.022 objectId:1565 3.4.11.- +HGNC:10080 RNPS1 RNA binding protein with serine rich domain 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 RNA-binding protein S1, serine-rich domain "RNA binding motif containing|ASAP complex" "725|1236" 1999-09-28 2016-04-14 2016-04-14 10921 ENSG00000205937 OTTHUMG00000128828 uc002cpw.4 AF015608 NM_080594 "CCDS10465|CCDS66907|CCDS73811" Q15287 "9580558|8543184" MGI:97960 RGD:1307522 RNPS1 606447 +HGNC:39525 RNPS1P1 RNA binding protein with serine rich domain 1 pseudogene 1 pseudogene pseudogene Approved 4p15.33 04p15.33 RNA binding protein S1, serine-rich domain pseudogene 1 2011-02-14 2016-04-14 2016-04-14 643446 ENSG00000250896 OTTHUMG00000160043 NG_023467 +HGNC:10082 RNR1 RNA, ribosomal cluster 1 non-coding RNA RNA, cluster Approved 13p12 13p12 RNA, ribosomal 1 2001-06-22 2013-02-25 2013-02-25 6052 180450 +HGNC:10083 RNR2 RNA, ribosomal cluster 2 non-coding RNA RNA, cluster Approved 14p12 14p12 RNA, ribosomal 2 2001-06-22 2013-02-25 2013-02-25 6053 AF305858 NR_024197 11350117 180451 +HGNC:10084 RNR3 RNA, ribosomal cluster 3 non-coding RNA RNA, cluster Approved 15p12 15p12 RNA, ribosomal 3 2001-06-22 2013-02-25 2013-02-25 6054 "11350117|6954460" 180452 +HGNC:10085 RNR4 RNA, ribosomal cluster 4 non-coding RNA RNA, cluster Approved 21p12 21p12 RNA, ribosomal 4 2001-06-22 2013-02-25 2013-02-25 6055 180453 +HGNC:10086 RNR5 RNA, ribosomal cluster 5 non-coding RNA RNA, cluster Approved 22p12 22p12 RNA, ribosomal 5 2001-06-22 2013-02-25 2013-02-25 6056 U13369 180454 +HGNC:10087 RNRP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-12-17 +HGNC:10088 RNRP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-12-17 +HGNC:10120 RNU1-1 RNA, U1 small nuclear 1 non-coding RNA RNA, small nuclear Approved 1p36.13 01p36.13 "Rnu1a1|U1|HU1-1|U1A1|HSD1" "RNU1|RNU1G4|RNU1A3|RNU1A" "RNA, U1G4 small nuclear|RNA, U1A3 small nuclear|RNA, U1A small nuclear" Small nuclear RNAs 849 1986-01-01 2009-11-05 2009-11-05 2014-11-19 26871 ENSG00000206652 uc031tqt.1 NR_004430 12082087 +HGNC:10123 RNU1-2 RNA, U1 small nuclear 2 non-coding RNA RNA, small nuclear Approved 1p36.13 01p36.13 "U1C1|U1C21" "RNU1C1|RNU1C2" "RNA, U1C1 small nuclear|RNA, U1C2 small nuclear" Small nuclear RNAs 849 1999-12-14 2009-11-05 2009-11-05 2014-11-18 26870 ENSG00000207005 uc031trd.1 M28012 NR_004427 3837185 +HGNC:10130 RNU1-3 RNA, U1 small nuclear 3 non-coding RNA RNA, small nuclear Approved 1p36.1 01p36.1 HSD4 RNU1G3 RNA, U1G3 small nuclear Small nuclear RNAs 849 1999-12-14 2009-11-05 2009-11-05 2014-11-19 26869 ENSG00000207513 uc031tqw.1 M20032 NR_004408 6179629 +HGNC:10128 RNU1-4 RNA, U1 small nuclear 4 non-coding RNA RNA, small nuclear Approved 1p36.1 01p36.1 "HSD6|U1E2|HSD2|U1D2|HSD5|U1B2|U1F|HSD7" "RNU1E2|RNU1G2|RNU1D2|RNU1F1|RNU1G1" "RNA, U1E2 small nuclear|RNA, U1G2 small nuclear|RNA, U1D2 small nuclear|RNA, U1F1 small nuclear|RNA, U1G1 small nuclear" Small nuclear RNAs 849 1999-12-14 2009-11-05 2009-11-05 2014-11-18 6060 ENSG00000207389 uc031tra.1 M20034 NR_004421 6179629 180680 +HGNC:48304 RNU1-5P RNA, U1 small nuclear 5, pseudogene pseudogene pseudogene Approved 1p36.13 01p36.13 RNU1-5 RNA, U1 small nuclear 5 2013-04-25 2013-05-10 2013-05-10 2015-01-30 107105261 ENSG00000277234 NG_046579 +HGNC:48305 RNU1-6P RNA, U1 small nuclear 6, pseudogene pseudogene pseudogene Approved 1p36.13 01p36.13 RNU1-6 RNA, U1 small nuclear 6 2013-04-25 2013-05-10 2013-05-10 2015-01-30 106480152 ENSG00000277344 NG_045316 +HGNC:48306 RNU1-7P RNA, U1 small nuclear 7, pseudogene pseudogene pseudogene Approved 1p36.23 01p36.23 RNU1-7 RNA, U1 small nuclear 7 2013-04-25 2013-05-10 2013-05-10 2013-05-10 106481952 ENSG00000200975 NG_043172 +HGNC:48307 RNU1-8P RNA, U1 small nuclear 8, pseudogene pseudogene pseudogene Approved 1p36.23 01p36.23 RNU1-8 RNA, U1 small nuclear 8 2013-04-25 2013-05-10 2013-05-10 2013-05-10 106481604 ENSG00000207056 NG_045856 +HGNC:10137 RNU1-11P RNA, U1 small nuclear 11, pseudogene pseudogene pseudogene Approved 6p24.1 06p24.1 "U1P1A|RNU1P1" RNU1P5 "RNA, U1 small nuclear pseudogene 5|RNA, U1 small nuclear 11 (pseudogene)" 1999-12-14 2009-11-06 2011-04-15 2014-11-19 26861 ENSG00000206702 uc063lxn.1 J00319 NG_001264 6180116 +HGNC:10138 RNU1-13P RNA, U1 small nuclear 13, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 "U1P1|U1.1" RNU1P6 RNA, U1 small nuclear pseudogene 6 1999-12-14 2009-11-06 2011-04-15 2014-11-19 26860 ENSG00000238825 uc031uuz.1 M25189 NG_001263 6085956 +HGNC:10139 RNU1-14P RNA, U1 small nuclear 14, pseudogene pseudogene pseudogene Approved 7p12.1 07p12.1 U1P17 RNU1P7 RNA, U1 small nuclear pseudogene 7 1999-12-14 2009-11-06 2011-04-15 2014-11-19 26859 ENSG00000199629 uc064drq.1 M25192 NG_001262 6173130 +HGNC:10140 RNU1-15P RNA, U1 small nuclear 15, pseudogene pseudogene pseudogene Approved 7p15.3 07p15.3 U1P11 RNU1P8 RNA, U1 small nuclear pseudogene 8 1999-12-14 2009-11-06 2011-04-15 2014-11-19 26858 ENSG00000195024 uc064bwd.1 M25191 NG_001261 6085956 +HGNC:39890 RNU1-16P RNA, U1 small nuclear 16, pseudogene pseudogene pseudogene Approved 13q34 13q34 U1.64 2011-04-08 2011-08-03 2011-08-03 2013-05-01 100873860 ENSG00000202347 uc058ynj.1 NG_032634 +HGNC:41943 RNU1-17P RNA, U1 small nuclear 17, pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 2011-05-19 2011-08-03 2011-08-03 2013-05-01 100873814 ENSG00000199892 uc063kum.1 NG_032596 +HGNC:41944 RNU1-18P RNA, U1 small nuclear 18, pseudogene pseudogene pseudogene Approved 6q22.31 06q22.31 2011-05-19 2011-08-03 2011-08-03 2013-05-01 100873815 ENSG00000199932 uc063rat.1 NG_032597 +HGNC:41945 RNU1-19P RNA, U1 small nuclear 19, pseudogene pseudogene pseudogene Approved 10q23.2 10q23.2 2011-05-19 2011-08-03 2011-08-03 2013-05-01 100873861 ENSG00000200176 uc057uqm.1 NG_032635 +HGNC:41946 RNU1-20P RNA, U1 small nuclear 20, pseudogene pseudogene pseudogene Approved 3q29 03q29 2011-05-19 2011-08-03 2011-08-03 2013-05-01 100873816 ENSG00000200184 uc062rlr.1 NG_032598 +HGNC:41947 RNU1-21P RNA, U1 small nuclear 21, pseudogene pseudogene pseudogene Approved 11q24.1 11q24.1 2011-05-19 2011-08-03 2011-08-03 2013-05-01 100873862 ENSG00000200197 uc058iqh.1 NG_032636 +HGNC:41963 RNU1-22P RNA, U1 small nuclear 22, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 2011-05-24 2011-08-03 2011-08-03 2013-05-01 100873863 ENSG00000200204 uc059pva.1 NG_032637 +HGNC:41964 RNU1-23P RNA, U1 small nuclear 23, pseudogene pseudogene pseudogene Approved 20p11.21 20p11.21 2011-05-24 2011-08-03 2011-08-03 2013-05-01 106478980 ENSG00000200231 uc061vwd.1 NG_043946 +HGNC:42504 RNU1-24P RNA, U1 small nuclear 24, pseudogene pseudogene pseudogene Approved 13q33.1 13q33.1 U1.41 2011-08-02 2011-08-03 2011-08-03 2014-11-19 100873865 ENSG00000201155 uc058ybp.1 NG_032638 +HGNC:37497 RNU1-27P RNA, U1 small nuclear 27, pseudogene pseudogene pseudogene Approved 14q13.1 14q13.1 RNU1-7P RNA, U1 small nuclear 7, pseudogene 2009-11-05 2013-05-01 2013-05-01 2014-11-18 26865 ENSG00000206596 NR_004424 +HGNC:37498 RNU1-28P RNA, U1 small nuclear 28, pseudogene pseudogene pseudogene Approved 14q13.1 14q13.1 "RNU1-8|RNU1-8P" "RNA, U1 small nuclear 8|RNA, U1 small nuclear 8, pseudogene" 2009-11-05 2013-05-01 2013-05-01 2014-11-19 26866 ENSG00000206588 NR_004402 +HGNC:48371 RNU1-29P RNA, U1 small nuclear 29, pseudogene pseudogene pseudogene Approved 7q31.31 07q31.31 2013-05-15 2015-01-30 106480154 ENSG00000271739 NG_043121 +HGNC:48372 RNU1-30P RNA, U1 small nuclear 30, pseudogene pseudogene pseudogene Approved 3q21.3 03q21.3 2013-05-15 2015-01-30 106480662 ENSG00000272020 NG_045310 +HGNC:48373 RNU1-31P RNA, U1 small nuclear 31, pseudogene pseudogene pseudogene Approved 2q37.2 02q37.2 2013-05-15 2013-05-15 106481606 ENSG00000200745 NG_045863 +HGNC:48374 RNU1-32P RNA, U1 small nuclear 32, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 2013-05-15 2013-05-15 106480155 ENSG00000200807 NG_045020 +HGNC:48375 RNU1-33P RNA, U1 small nuclear 33, pseudogene pseudogene pseudogene Approved 6q24.3 06q24.3 2013-05-15 2013-05-15 106480156 ENSG00000201119 NG_043136 +HGNC:48376 RNU1-34P RNA, U1 small nuclear 34, pseudogene pseudogene pseudogene Approved 6q14.1 06q14.1 2013-05-15 2013-05-15 106481607 ENSG00000201291 NG_045866 +HGNC:48377 RNU1-35P RNA, U1 small nuclear 35, pseudogene pseudogene pseudogene Approved 8q24.23 08q24.23 2013-05-15 2013-05-15 106480157 ENSG00000199652 NG_043144 +HGNC:48378 RNU1-36P RNA, U1 small nuclear 36, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 2013-05-15 2013-05-15 106481783 ENSG00000202000 NG_043861 +HGNC:48380 RNU1-38P RNA, U1 small nuclear 38, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 2013-05-15 2013-05-15 106481608 ENSG00000199687 NG_044488 +HGNC:48381 RNU1-39P RNA, U1 small nuclear 39, pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 2013-05-15 2013-05-15 106481953 ENSG00000206624 NG_043180 +HGNC:48382 RNU1-40P RNA, U1 small nuclear 40, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2013-05-15 2013-05-15 106480158 ENSG00000252625 NG_045338 +HGNC:48383 RNU1-41P RNA, U1 small nuclear 41, pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2013-05-15 2013-05-15 107105262 ENSG00000251970 +HGNC:48384 RNU1-42P RNA, U1 small nuclear 42, pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 2013-05-15 2013-05-15 106481609 ENSG00000200903 NG_044496 +HGNC:48385 RNU1-43P RNA, U1 small nuclear 43, pseudogene pseudogene pseudogene Approved 3q13.11 03q13.11 2013-05-15 2013-05-15 106480159 ENSG00000201922 NG_045344 +HGNC:48386 RNU1-44P RNA, U1 small nuclear 44, pseudogene pseudogene pseudogene Approved 4q31.22 04q31.22 2013-05-15 2013-05-15 106480160 ENSG00000207182 NG_043168 +HGNC:48387 RNU1-45P RNA, U1 small nuclear 45, pseudogene pseudogene pseudogene Approved 4q34.3 04q34.3 2013-05-15 2013-05-15 106481610 ENSG00000253000 NG_044505 +HGNC:48388 RNU1-46P RNA, U1 small nuclear 46, pseudogene pseudogene pseudogene Approved 18q21.2 18q21.2 2013-05-15 2013-05-15 106480663 ENSG00000207154 NG_043095 +HGNC:48389 RNU1-47P RNA, U1 small nuclear 47, pseudogene pseudogene pseudogene Approved 14q32.2 14q32.2 2013-05-15 2013-05-15 106480161 ENSG00000199836 NG_043175 +HGNC:48390 RNU1-48P RNA, U1 small nuclear 48, pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2013-05-15 2013-05-15 107080628 ENSG00000252209 NG_004636 +HGNC:48391 RNU1-49P RNA, U1 small nuclear 49, pseudogene pseudogene pseudogene Approved 4p13 04p13 2013-05-15 2013-05-15 106480162 ENSG00000200338 NG_043183 +HGNC:48393 RNU1-51P RNA, U1 small nuclear 51, pseudogene pseudogene pseudogene Approved 4q35.2 04q35.2 2013-05-15 2013-05-15 106480163 ENSG00000202215 NG_043194 +HGNC:48394 RNU1-52P RNA, U1 small nuclear 52, pseudogene pseudogene pseudogene Approved 17q22 17q22 2013-05-15 2013-05-15 106480164 ENSG00000206917 NG_045361 +HGNC:48396 RNU1-54P RNA, U1 small nuclear 54, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 2013-05-15 2013-05-15 106481611 ENSG00000252990 NG_045876 +HGNC:48397 RNU1-55P RNA, U1 small nuclear 55, pseudogene pseudogene pseudogene Approved 20p12.3 20p12.3 2013-05-15 2013-05-15 106481954 ENSG00000202380 NG_043189 +HGNC:48398 RNU1-56P RNA, U1 small nuclear 56, pseudogene pseudogene pseudogene Approved Xq13.1 Xq13.1 2013-05-15 2013-05-15 106480165 ENSG00000212605 NG_043209 +HGNC:48399 RNU1-57P RNA, U1 small nuclear 57, pseudogene pseudogene pseudogene Approved Xq23 Xq23 2013-05-15 2013-05-15 106480166 ENSG00000207220 NG_043220 +HGNC:48400 RNU1-58P RNA, U1 small nuclear 58, pseudogene pseudogene pseudogene Approved 7q34 07q34 2013-05-15 2013-05-15 106481612 ENSG00000199283 NG_045879 +HGNC:48401 RNU1-59P RNA, U1 small nuclear 59, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 2013-05-15 2013-05-15 106480167 ENSG00000201699 NG_043231 +HGNC:48402 RNU1-60P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:48403 RNU1-61P RNA, U1 small nuclear 61, pseudogene pseudogene pseudogene Approved 6p21.32 06p21.32 2013-05-15 2013-05-15 106481980 ENSG00000251916 NG_045441 +HGNC:48404 RNU1-62P RNA, U1 small nuclear 62, pseudogene pseudogene pseudogene Approved 3p13 03p13 2013-05-15 2013-05-15 106481613 ENSG00000199469 NG_044532 +HGNC:48405 RNU1-63P RNA, U1 small nuclear 63, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 2013-05-15 2013-05-15 106480664 ENSG00000206629 NG_043104 +HGNC:48406 RNU1-64P RNA, U1 small nuclear 64, pseudogene pseudogene pseudogene Approved 6p24.2 06p24.2 2013-05-15 2013-05-15 106480168 ENSG00000202313 NG_043240 +HGNC:48407 RNU1-65P RNA, U1 small nuclear 65, pseudogene pseudogene pseudogene Approved 10q23.1 10q23.1 2013-05-15 2013-05-15 106481614 ENSG00000200789 NG_044537 +HGNC:48409 RNU1-67P RNA, U1 small nuclear 67, pseudogene pseudogene pseudogene Approved Xq24 Xq24 2013-05-15 2013-05-15 106480169 ENSG00000207175 NG_045374 +HGNC:48410 RNU1-68P RNA, U1 small nuclear 68, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 2013-05-15 2015-01-30 106481615 ENSG00000275229 NG_044546 +HGNC:48411 RNU1-69P RNA, U1 small nuclear 69, pseudogene pseudogene pseudogene Approved 12q13.2 12q13.2 2013-05-15 2013-05-15 106480170 ENSG00000207339 NG_043260 +HGNC:48412 RNU1-70P RNA, U1 small nuclear 70, pseudogene pseudogene pseudogene Approved 3q26.2 03q26.2 2013-05-15 2013-05-15 107105264 ENSG00000199488 NG_046581 +HGNC:48414 RNU1-72P RNA, U1 small nuclear 72, pseudogene pseudogene pseudogene Approved 7q32.1 07q32.1 2013-05-15 2013-05-15 106481955 ENSG00000199846 NG_045358 +HGNC:48415 RNU1-73P RNA, U1 small nuclear 73, pseudogene pseudogene pseudogene Approved 5q15 05q15 2013-05-15 2013-05-15 106481616 ENSG00000206698 NG_045893 +HGNC:48416 RNU1-74P RNA, U1 small nuclear 74, pseudogene pseudogene pseudogene Approved 1q42.2 01q42.2 2013-05-15 2013-05-15 106480171 ENSG00000206835 NG_043270 +HGNC:48417 RNU1-75P RNA, U1 small nuclear 75, pseudogene pseudogene pseudogene Approved 1p12 01p12 2013-05-15 2013-05-15 106480172 ENSG00000194297 NG_043279 +HGNC:48418 RNU1-76P RNA, U1 small nuclear 76, pseudogene pseudogene pseudogene Approved 5p15.31 05p15.31 2013-05-15 2013-05-15 106481617 ENSG00000199773 NG_044560 +HGNC:48419 RNU1-77P RNA, U1 small nuclear 77, pseudogene pseudogene pseudogene Approved 15q25.2 15q25.2 2013-05-15 2013-05-15 106480173 ENSG00000212170 NG_045385 +HGNC:48420 RNU1-78P RNA, U1 small nuclear 78, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 2013-05-15 2013-05-15 106480665 ENSG00000212550 NG_043115 +HGNC:48421 RNU1-79P RNA, U1 small nuclear 79, pseudogene pseudogene pseudogene Approved HSCHR6_MHC_COXp21.32 HSCHR6_MHC_COXp21.32 2013-05-15 2013-05-15 107521942 ENSG00000265223 NG_046842 +HGNC:48422 RNU1-80P RNA, U1 small nuclear 80, pseudogene pseudogene pseudogene Approved 17q25.3 17q25.3 2013-05-15 2013-05-15 106480174 ENSG00000238898 NG_043297 +HGNC:48424 RNU1-82P RNA, U1 small nuclear 82, pseudogene pseudogene pseudogene Approved 7q34 07q34 2013-05-15 2013-05-15 106480175 ENSG00000212153 NG_045392 +HGNC:48425 RNU1-83P RNA, U1 small nuclear 83, pseudogene pseudogene pseudogene Approved 12q14.2 12q14.2 2013-05-15 2013-05-15 106480176 ENSG00000200296 NG_045395 +HGNC:48426 RNU1-84P RNA, U1 small nuclear 84, pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 2013-05-15 2013-05-15 106481618 ENSG00000202317 NG_044568 +HGNC:48427 RNU1-85P RNA, U1 small nuclear 85, pseudogene pseudogene pseudogene Approved 17q22 17q22 2013-05-15 2013-05-15 106480177 ENSG00000200997 NG_045398 +HGNC:48428 RNU1-86P RNA, U1 small nuclear 86, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2013-05-15 2013-05-15 106480666 ENSG00000251917 NG_043122 +HGNC:48429 RNU1-87P RNA, U1 small nuclear 87, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 2013-05-15 2013-05-15 106480178 ENSG00000200597 NG_045404 +HGNC:48430 RNU1-88P RNA, U1 small nuclear 88, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 2013-05-15 2013-05-15 106481619 ENSG00000238554 NG_044578 +HGNC:48431 RNU1-89P RNA, U1 small nuclear 89, pseudogene pseudogene pseudogene Approved 4q28.3 04q28.3 2013-05-15 2013-05-15 106480412 ENSG00000207322 NG_043137 +HGNC:48433 RNU1-91P RNA, U1 small nuclear 91, pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 2013-05-15 2013-05-15 106480179 ENSG00000201616 NG_045406 +HGNC:48434 RNU1-92P RNA, U1 small nuclear 92, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 2013-05-15 2013-05-15 106481620 ENSG00000252826 NG_044587 +HGNC:48435 RNU1-93P RNA, U1 small nuclear 93, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 2013-05-15 2013-05-15 106480180 ENSG00000201574 NG_045409 +HGNC:48436 RNU1-94P RNA, U1 small nuclear 94, pseudogene pseudogene pseudogene Approved 20q11.21 20q11.21 2013-05-15 2013-05-15 106481956 ENSG00000199497 NG_045362 +HGNC:48437 RNU1-95P RNA, U1 small nuclear 95, pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2013-05-15 2013-05-15 106481621 ENSG00000252166 NG_045904 +HGNC:48438 RNU1-96P RNA, U1 small nuclear 96, pseudogene pseudogene pseudogene Approved 3p24.1 03p24.1 2013-05-15 2013-05-15 106480181 ENSG00000201033 NG_043352 +HGNC:48439 RNU1-97P RNA, U1 small nuclear 97, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2013-05-15 2013-05-15 106480182 ENSG00000252681 NG_045417 +HGNC:48440 RNU1-98P RNA, U1 small nuclear 98, pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 2013-05-15 2013-05-15 106481622 ENSG00000239023 NG_044604 +HGNC:48442 RNU1-100P RNA, U1 small nuclear 100, pseudogene pseudogene pseudogene Approved 3q23 03q23 2013-05-15 2013-05-15 106480183 ENSG00000202125 NG_045420 +HGNC:48443 RNU1-101P RNA, U1 small nuclear 101, pseudogene pseudogene pseudogene Approved 8q13.3 08q13.3 2013-05-15 2013-05-15 106480667 ENSG00000212473 NG_043130 +HGNC:48445 RNU1-103P RNA, U1 small nuclear 103, pseudogene pseudogene pseudogene Approved 16q24.1 16q24.1 2013-05-15 2013-05-15 106481623 ENSG00000252311 NG_045909 +HGNC:48446 RNU1-104P RNA, U1 small nuclear 104, pseudogene pseudogene pseudogene Approved 12q24.32 12q24.32 2013-05-15 2013-05-15 106480184 ENSG00000253089 NG_043375 +HGNC:48447 RNU1-105P RNA, U1 small nuclear 105, pseudogene pseudogene pseudogene Approved 6p12.3 06p12.3 2013-05-15 2013-05-15 106480185 ENSG00000200340 NG_045429 +HGNC:48448 RNU1-106P RNA, U1 small nuclear 106, pseudogene pseudogene pseudogene Approved 8q24.21 08q24.21 2013-05-15 2013-05-15 106481624 ENSG00000207110 NG_045914 +HGNC:48449 RNU1-107P RNA, U1 small nuclear 107, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2013-05-15 2013-05-15 106480186 ENSG00000252426 NG_043391 +HGNC:48450 RNU1-108P RNA, U1 small nuclear 108, pseudogene pseudogene pseudogene Approved 17q22 17q22 2013-05-15 2013-05-15 106481957 ENSG00000199426 NG_045367 +HGNC:48451 RNU1-109P RNA, U1 small nuclear 109, pseudogene pseudogene pseudogene Approved 18p11.32 18p11.32 2013-05-15 2013-05-15 106481625 ENSG00000206687 NG_045917 +HGNC:48454 RNU1-112P RNA, U1 small nuclear 112, pseudogene pseudogene pseudogene Approved Xq13.2 Xq13.2 2013-05-15 2013-05-15 106480187 ENSG00000201271 NG_043398 +HGNC:48456 RNU1-114P RNA, U1 small nuclear 114, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 2013-05-15 2013-05-15 106481626 ENSG00000202167 NG_045920 +HGNC:48457 RNU1-115P RNA, U1 small nuclear 115, pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 2013-05-15 2013-05-15 106480188 ENSG00000202199 NG_043406 +HGNC:48458 RNU1-116P RNA, U1 small nuclear 116, pseudogene pseudogene pseudogene Approved HSCHR6_MHC_COXp21.32 HSCHR6_MHC_COXp21.32 2013-05-15 2013-05-15 107521946 ENSG00000264259 NG_046843 +HGNC:48459 RNU1-117P RNA, U1 small nuclear 117, pseudogene pseudogene pseudogene Approved 12q21.32 12q21.32 2013-05-15 2013-05-15 106480189 ENSG00000252850 NG_043415 +HGNC:48461 RNU1-119P RNA, U1 small nuclear 119, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 2013-05-15 2013-05-15 106480668 ENSG00000212424 NG_043138 +HGNC:48462 RNU1-120P RNA, U1 small nuclear 120, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 2013-05-15 2013-05-15 106481627 ENSG00000199879 NG_044643 +HGNC:48464 RNU1-122P RNA, U1 small nuclear 122, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 2013-05-15 2013-05-15 106480190 ENSG00000202408 NG_043425 +HGNC:48465 RNU1-123P RNA, U1 small nuclear 123, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 2013-05-15 2013-05-15 106481628 ENSG00000239194 NG_045929 +HGNC:48466 RNU1-124P RNA, U1 small nuclear 124, pseudogene pseudogene pseudogene Approved 8p11.21 08p11.21 2013-05-15 2013-05-15 106481629 ENSG00000200731 NG_045934 +HGNC:48467 RNU1-125P RNA, U1 small nuclear 125, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 2013-05-15 2013-05-15 106866915 ENSG00000252561 NG_046326 +HGNC:48470 RNU1-128P RNA, U1 small nuclear 128, pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2013-05-15 2013-05-15 106480191 ENSG00000252513 NG_045447 +HGNC:48471 RNU1-129P RNA, U1 small nuclear 129, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 RNU1-137P RNA, U1 small nuclear 137, pseudogene 2013-05-15 2015-02-04 106481630 ENSG00000206791 NG_044664 +HGNC:48472 RNU1-130P RNA, U1 small nuclear 130, pseudogene pseudogene pseudogene Approved 1p21.3 01p21.3 2013-05-15 2013-05-15 106480192 ENSG00000200800 NG_043440 +HGNC:48473 RNU1-131P RNA, U1 small nuclear 131, pseudogene pseudogene pseudogene Approved 20p12.1 20p12.1 2013-05-15 2013-05-15 106480193 ENSG00000238833 NG_043447 +HGNC:48474 RNU1-132P RNA, U1 small nuclear 132, pseudogene pseudogene pseudogene Approved 1q44 01q44 2013-05-15 2013-05-15 106481958 ENSG00000201170 NG_043225 +HGNC:48475 RNU1-133P RNA, U1 small nuclear 133, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 2013-05-15 2013-05-15 106481631 ENSG00000201737 NG_045944 +HGNC:48476 RNU1-134P RNA, U1 small nuclear 134, pseudogene pseudogene pseudogene Approved 20q13.33 20q13.33 2013-05-15 2013-05-15 106480194 ENSG00000199805 NG_045455 +HGNC:48477 RNU1-135P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-02-04 +HGNC:48478 RNU1-136P RNA, U1 small nuclear 136, pseudogene pseudogene pseudogene Approved 6p12.1 06p12.1 2013-05-15 2013-05-15 106481632 ENSG00000206908 NG_044677 +HGNC:48480 RNU1-138P RNA, U1 small nuclear 138, pseudogene pseudogene pseudogene Approved 4q26 04q26 2013-05-15 2013-05-15 106480195 ENSG00000206820 NG_043463 +HGNC:48481 RNU1-139P RNA, U1 small nuclear 139, pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 2013-05-15 2013-05-15 106480196 ENSG00000212609 NG_043470 +HGNC:48482 RNU1-140P RNA, U1 small nuclear 140, pseudogene pseudogene pseudogene Approved 5q21.2 05q21.2 2013-05-15 2013-05-15 106480669 ENSG00000201910 NG_043146 +HGNC:48483 RNU1-141P RNA, U1 small nuclear 141, pseudogene pseudogene pseudogene Approved 1q41 01q41 2013-05-15 2013-05-15 106481633 ENSG00000201493 NG_044688 +HGNC:48484 RNU1-142P RNA, U1 small nuclear 142, pseudogene pseudogene pseudogene Approved Xp21.3 Xp21.3 2013-05-15 2013-05-15 106480197 ENSG00000252491 NG_043475 +HGNC:48485 RNU1-143P RNA, U1 small nuclear 143, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 2013-05-15 2013-05-15 106481634 ENSG00000252105 NG_044696 +HGNC:48488 RNU1-146P RNA, U1 small nuclear 146, pseudogene pseudogene pseudogene Approved 12p12.3 12p12.3 2013-05-15 2013-05-15 106480198 ENSG00000200885 NG_043482 +HGNC:48490 RNU1-148P RNA, U1 small nuclear 148, pseudogene pseudogene pseudogene Approved 8p21.2 08p21.2 2013-05-15 2013-05-15 106481635 ENSG00000207201 NG_044706 +HGNC:48491 RNU1-149P RNA, U1 small nuclear 149, pseudogene pseudogene pseudogene Approved 12p12.1 12p12.1 2013-05-15 2013-05-15 107048983 ENSG00000212172 NG_046347 +HGNC:48492 RNU1-150P RNA, U1 small nuclear 150, pseudogene pseudogene pseudogene Approved 5p13.1 05p13.1 2013-05-15 2013-05-15 106480413 ENSG00000199361 NG_043145 +HGNC:10135 RNU1P3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:10136 RNU1P4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:10142 RNU2-1 RNA, U2 small nuclear 1 non-coding RNA RNA, small nuclear Approved 17q12 17q12 U2 Small nuclear RNAs 849 2001-06-22 2013-05-16 2013-05-16 2013-07-02 6066 ENSG00000274585 uc060fta.1 U57614 NR_002716 2411549 180690 +HGNC:10152 RNU2-2P RNA, U2 small nuclear 2, pseudogene pseudogene pseudogene Approved 11q12.3 11q12.3 U2 "RNU2B|RNU2-2" "RNA, U2B small nuclear|RNA, U2 small nuclear 2" 1999-12-14 2013-05-16 2013-05-16 2014-11-19 26855 ENSG00000222328 K02847 NR_002761 6238232 +HGNC:10153 RNU2-3P RNA, U2 small nuclear 3, pseudogene pseudogene pseudogene Approved 15q26.2 15q26.2 U2 RNU2P1 RNA, U2 small nuclear pseudogene 1 1999-12-14 2009-11-06 2011-04-15 2014-11-19 26854 ENSG00000222076 uc059npg.1 K03024 NG_001258 6209403 +HGNC:10154 RNU2-4P RNA, U2 small nuclear 4, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 "U2|U2/7" RNU2P2 RNA, U2 small nuclear pseudogene 2 1999-12-14 2009-11-06 2011-04-15 2015-01-30 26853 ENSG00000277084 uc060ftp.1 K02228 NG_001257 6201719 +HGNC:10155 RNU2-5P RNA, U2 small nuclear 5, pseudogene pseudogene pseudogene Approved 9q21.11 09q21.11 "U2|u2.7" RNU2P3 RNA, U2 small nuclear pseudogene 3 1999-12-14 2009-11-06 2011-04-15 2014-11-19 26852 ENSG00000222465 uc064tqx.1 K00779 NG_001256 6165010 +HGNC:42506 RNU2-6P RNA, U2 small nuclear 6, pseudogene pseudogene pseudogene Approved 13q14.13 13q14.13 2011-08-02 2014-11-19 100873825 ENSG00000223336 uc032aej.2 NG_032605 +HGNC:42505 RNU2-7P RNA, U2 small nuclear 7, pseudogene pseudogene pseudogene Approved 13q12.11 13q12.11 2011-08-02 2014-11-19 100873824 ENSG00000222726 uc031zyb.2 NG_032604 +HGNC:48501 RNU2-8P RNA, U2 small nuclear 8, pseudogene pseudogene pseudogene Approved 6q22.31 06q22.31 2013-05-16 2013-05-16 106480200 ENSG00000222659 NG_043497 +HGNC:48502 RNU2-9P RNA, U2 small nuclear 9, pseudogene pseudogene pseudogene Approved 2q23.1 02q23.1 2013-05-16 2013-05-16 106481636 ENSG00000222126 NG_045190 +HGNC:48503 RNU2-10P RNA, U2 small nuclear 10, pseudogene pseudogene pseudogene Approved 3p14.2 03p14.2 2013-05-16 2013-05-16 106480201 ENSG00000252184 NG_043506 +HGNC:48504 RNU2-11P RNA, U2 small nuclear 11, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-16 2013-05-16 106481637 ENSG00000239122 NG_044723 +HGNC:48505 RNU2-12P RNA, U2 small nuclear 12, pseudogene pseudogene pseudogene Approved 1q25.2 01q25.2 2013-05-16 2013-05-16 106480202 ENSG00000253025 NG_043515 +HGNC:48506 RNU2-13P RNA, U2 small nuclear 13, pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 2013-05-16 2013-05-16 106480203 ENSG00000251718 NG_045480 +HGNC:48507 RNU2-14P RNA, U2 small nuclear 14, pseudogene pseudogene pseudogene Approved 14q23.3 14q23.3 2013-05-16 2013-05-16 106481638 ENSG00000222985 NG_044733 +HGNC:48508 RNU2-15P RNA, U2 small nuclear 15, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-16 2013-05-16 106866980 ENSG00000222624 NG_046327 +HGNC:48509 RNU2-16P RNA, U2 small nuclear 16, pseudogene pseudogene pseudogene Approved 4q21.1 04q21.1 2013-05-16 2013-05-16 106481639 ENSG00000222644 NG_044741 +HGNC:48510 RNU2-17P RNA, U2 small nuclear 17, pseudogene pseudogene pseudogene Approved 1q21.2 01q21.2 2013-05-16 2013-05-16 106480204 ENSG00000222222 NG_043532 +HGNC:48511 RNU2-18P RNA, U2 small nuclear 18, pseudogene pseudogene pseudogene Approved 10p13 10p13 2013-05-16 2013-05-16 106480205 ENSG00000223156 NG_045487 +HGNC:48512 RNU2-19P RNA, U2 small nuclear 19, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-16 2013-05-16 106481959 ENSG00000253097 NG_043237 +HGNC:48513 RNU2-20P RNA, U2 small nuclear 20, pseudogene pseudogene pseudogene Approved 3q26.2 03q26.2 2013-05-16 2013-05-16 106481640 ENSG00000222357 NG_045968 +HGNC:48514 RNU2-21P RNA, U2 small nuclear 21, pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 2013-05-16 2013-05-16 106480206 ENSG00000222300 NG_043549 +HGNC:48515 RNU2-22P RNA, U2 small nuclear 22, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 2013-05-16 2013-05-16 106660611 ENSG00000223198 NG_042900 +HGNC:48516 RNU2-23P RNA, U2 small nuclear 23, pseudogene pseudogene pseudogene Approved 11q13.1 11q13.1 2013-05-16 2013-05-16 106481641 ENSG00000222477 NG_044758 +HGNC:48517 RNU2-24P RNA, U2 small nuclear 24, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-05-16 2013-05-16 106480207 ENSG00000252639 NG_043557 +HGNC:48518 RNU2-25P RNA, U2 small nuclear 25, pseudogene pseudogene pseudogene Approved 9p24.3 09p24.3 2013-05-16 2013-05-16 106480208 ENSG00000222973 NG_043567 +HGNC:48519 RNU2-26P RNA, U2 small nuclear 26, pseudogene pseudogene pseudogene Approved Xq21.31 Xq21.31 2013-05-16 2013-05-16 106480414 ENSG00000222440 NG_045339 +HGNC:48520 RNU2-27P RNA, U2 small nuclear 27, pseudogene pseudogene pseudogene Approved 18p11.22 18p11.22 2013-05-16 2013-05-16 106481642 ENSG00000251994 NG_044766 +HGNC:48521 RNU2-28P RNA, U2 small nuclear 28, pseudogene pseudogene pseudogene Approved 3p12.2 03p12.2 2013-05-16 2013-05-16 106480670 ENSG00000222389 NG_043153 +HGNC:48522 RNU2-29P RNA, U2 small nuclear 29, pseudogene pseudogene pseudogene Approved 7p12.1 07p12.1 2013-05-16 2013-05-16 106480209 ENSG00000222355 NG_043575 +HGNC:48523 RNU2-30P RNA, U2 small nuclear 30, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 2013-05-16 2013-05-16 106481643 ENSG00000252018 NG_045976 +HGNC:48524 RNU2-31P RNA, U2 small nuclear 31, pseudogene pseudogene pseudogene Approved 3q25.33 03q25.33 2013-05-16 2013-05-16 106480210 ENSG00000252763 NG_043583 +HGNC:48525 RNU2-32P RNA, U2 small nuclear 32, pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 2013-05-16 2013-05-16 106481644 ENSG00000223125 NG_044781 +HGNC:48526 RNU2-33P RNA, U2 small nuclear 33, pseudogene pseudogene pseudogene Approved 14q32.2 14q32.2 2013-05-16 2013-05-16 106480211 ENSG00000222276 NG_045500 +HGNC:48527 RNU2-34P RNA, U2 small nuclear 34, pseudogene pseudogene pseudogene Approved 4q35.1 04q35.1 2013-05-16 2013-05-16 106481960 ENSG00000252343 NG_045373 +HGNC:48528 RNU2-35P RNA, U2 small nuclear 35, pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 2013-05-16 2013-05-16 106480212 ENSG00000252255 NG_045504 +HGNC:48529 RNU2-36P RNA, U2 small nuclear 36, pseudogene pseudogene pseudogene Approved 9q21.33 09q21.33 2013-05-16 2013-05-16 106481645 ENSG00000222293 NG_044792 +HGNC:48530 RNU2-37P RNA, U2 small nuclear 37, pseudogene pseudogene pseudogene Approved 3q21.3 03q21.3 2013-05-16 2013-05-16 106480213 ENSG00000222627 NG_043607 +HGNC:48531 RNU2-38P RNA, U2 small nuclear 38, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 2013-05-16 2013-05-16 106481646 ENSG00000222788 NG_044799 +HGNC:48532 RNU2-39P RNA, U2 small nuclear 39, pseudogene pseudogene pseudogene Approved 2p13.2 02p13.2 2013-05-16 2013-05-16 106480214 ENSG00000222536 NG_045075 +HGNC:48533 RNU2-40P RNA, U2 small nuclear 40, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 2013-05-16 2013-05-16 106480671 ENSG00000222765 NG_043161 +HGNC:48534 RNU2-41P RNA, U2 small nuclear 41, pseudogene pseudogene pseudogene Approved 2q14.1 02q14.1 2013-05-16 2013-05-16 106480215 ENSG00000222923 NG_045076 +HGNC:48535 RNU2-42P RNA, U2 small nuclear 42, pseudogene pseudogene pseudogene Approved 10q26.2 10q26.2 2013-05-16 2013-05-16 106481647 ENSG00000222629 NG_044807 +HGNC:48536 RNU2-43P RNA, U2 small nuclear 43, pseudogene pseudogene pseudogene Approved 10q24.32 10q24.32 2013-05-16 2013-05-16 106480216 ENSG00000222238 NG_043628 +HGNC:48537 RNU2-44P RNA, U2 small nuclear 44, pseudogene pseudogene pseudogene Approved 4q32.1 04q32.1 2013-05-16 2013-05-16 106481648 ENSG00000252604 NG_045993 +HGNC:48538 RNU2-45P RNA, U2 small nuclear 45, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 2013-05-16 2013-05-16 106480217 ENSG00000251877 NG_043637 +HGNC:48539 RNU2-46P RNA, U2 small nuclear 46, pseudogene pseudogene pseudogene Approved 9q22.32 09q22.32 2013-05-16 2013-05-16 106480218 ENSG00000252847 NG_043642 +HGNC:48540 RNU2-47P RNA, U2 small nuclear 47, pseudogene pseudogene pseudogene Approved 9p23 09p23 2013-05-16 2013-05-16 106480672 ENSG00000222581 NG_043169 +HGNC:48541 RNU2-48P RNA, U2 small nuclear 48, pseudogene pseudogene pseudogene Approved 5q33.3 05q33.3 2013-05-16 2013-05-16 106481649 ENSG00000222626 NG_044824 +HGNC:48542 RNU2-49P RNA, U2 small nuclear 49, pseudogene pseudogene pseudogene Approved 5q22.3 05q22.3 2013-05-16 2013-05-16 106480219 ENSG00000222598 NG_043651 +HGNC:48543 RNU2-50P RNA, U2 small nuclear 50, pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 2013-05-16 2013-05-16 106481650 ENSG00000222426 NG_046001 +HGNC:48544 RNU2-51P RNA, U2 small nuclear 51, pseudogene pseudogene pseudogene Approved 14q24.2 14q24.2 2013-05-16 2013-05-16 106480415 ENSG00000222640 NG_043160 +HGNC:48545 RNU2-52P RNA, U2 small nuclear 52, pseudogene pseudogene pseudogene Approved 20q12 20q12 2013-05-16 2013-05-16 107080629 ENSG00000222612 NG_046391 +HGNC:48546 RNU2-53P RNA, U2 small nuclear 53, pseudogene pseudogene pseudogene Approved 15q21.3 15q21.3 2013-05-16 2013-05-16 106480220 ENSG00000252066 NG_043660 +HGNC:48547 RNU2-54P RNA, U2 small nuclear 54, pseudogene pseudogene pseudogene Approved 8q21.11 08q21.11 2013-05-16 2013-05-16 106481651 ENSG00000222231 NG_044841 +HGNC:48548 RNU2-55P RNA, U2 small nuclear 55, pseudogene pseudogene pseudogene Approved 21q21.2 21q21.2 2013-05-16 2013-05-16 106481961 ENSG00000223078 NG_043256 +HGNC:48549 RNU2-56P RNA, U2 small nuclear 56, pseudogene pseudogene pseudogene Approved 20p11.23 20p11.23 2013-05-16 2013-05-16 106480221 ENSG00000252635 NG_043665 +HGNC:48550 RNU2-57P RNA, U2 small nuclear 57, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2013-05-16 2013-05-16 106480222 ENSG00000252468 NG_045536 +HGNC:48551 RNU2-58P RNA, U2 small nuclear 58, pseudogene pseudogene pseudogene Approved 17q22 17q22 2013-05-16 2013-05-16 106481652 ENSG00000252212 NG_046008 +HGNC:48552 RNU2-59P RNA, U2 small nuclear 59, pseudogene pseudogene pseudogene Approved 10q24.32 10q24.32 2013-05-16 2013-05-16 106480223 ENSG00000222414 NG_043678 +HGNC:48553 RNU2-60P RNA, U2 small nuclear 60, pseudogene pseudogene pseudogene Approved 11q23.1 11q23.1 2013-05-16 2013-05-16 106481653 ENSG00000253099 NG_044859 +HGNC:48554 RNU2-61P RNA, U2 small nuclear 61, pseudogene pseudogene pseudogene Approved 6q15 06q15 2013-05-16 2013-05-16 106480673 ENSG00000223001 NG_043177 +HGNC:48555 RNU2-62P RNA, U2 small nuclear 62, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 2013-05-16 2013-05-16 106480224 ENSG00000222800 NG_043688 +HGNC:48556 RNU2-63P RNA, U2 small nuclear 63, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 2013-05-16 2013-05-16 106480225 ENSG00000222724 NG_045085 +HGNC:48557 RNU2-64P RNA, U2 small nuclear 64, pseudogene pseudogene pseudogene Approved 3p13 03p13 2013-05-16 2013-05-16 106481654 ENSG00000223247 NG_044868 +HGNC:48558 RNU2-65P RNA, U2 small nuclear 65, pseudogene pseudogene pseudogene Approved 15q23 15q23 2013-05-16 2013-05-16 106480226 ENSG00000222094 NG_043702 +HGNC:48559 RNU2-66P RNA, U2 small nuclear 66, pseudogene pseudogene pseudogene Approved 4q32.1 04q32.1 2013-05-16 2013-05-16 106481655 ENSG00000222582 NG_046020 +HGNC:48560 RNU2-67P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-08 +HGNC:48561 RNU2-68P RNA, U2 small nuclear 68, pseudogene pseudogene pseudogene Approved Xq13.1 Xq13.1 2013-05-16 2013-05-16 106481962 ENSG00000222810 NG_045378 +HGNC:48562 RNU2-69P RNA, U2 small nuclear 69, pseudogene pseudogene pseudogene Approved 18q21.32 18q21.32 2013-05-16 2013-05-16 106481656 ENSG00000251870 NG_044881 +HGNC:48563 RNU2-70P RNA, U2 small nuclear 70, pseudogene pseudogene pseudogene Approved 1q42.3 01q42.3 2013-05-16 2013-05-16 106480227 ENSG00000222650 NG_045549 +HGNC:48564 RNU2-71P RNA, U2 small nuclear 71, pseudogene pseudogene pseudogene Approved 8q21.13 08q21.13 2013-05-16 2013-05-16 106480228 ENSG00000223327 NG_043716 +HGNC:48565 RNU2-72P RNA, U2 small nuclear 72, pseudogene pseudogene pseudogene Approved 10q21.2 10q21.2 2013-05-16 2013-05-16 106480702 ENSG00000223107 NG_045444 +HGNC:10169 RNU3A2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-09-05 +HGNC:10170 RNU3A3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-09-05 +HGNC:10171 RNU3B1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-09-05 +HGNC:10172 RNU3B2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-09-05 +HGNC:10173 RNU3B3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-09-05 +HGNC:10174 RNU3B4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-09-05 +HGNC:10175 RNU3P1 RNA, U3 small nucleolar pseudogene 1 pseudogene pseudogene Approved 15q22.1 15q22.1 U3 1993-06-08 2011-08-22 6068 X14946 NG_001185 2719960 +HGNC:10176 RNU3P2 RNA, U3 small nucleolar pseudogene 2 pseudogene pseudogene Approved 8p21.3 08p21.3 "U3|U3.2" 1999-12-14 2011-08-22 26844 K00773 NG_001255 6186397 +HGNC:10177 RNU3P3 RNA, U3 small nucleolar pseudogene 3 pseudogene pseudogene Approved 14q31.3 14q31.3 "U3|U3.5|u3.7" 1999-12-14 2015-01-29 26843 K00774 NG_001254 "6186397|6173130" +HGNC:10178 RNU3P4 RNA, U3 small nucleolar pseudogene 4 pseudogene pseudogene Approved 3q27.3 03q27.3 "U3|U3.6" 1999-12-14 2011-08-22 26842 K00775 NG_001253 6186397 +HGNC:10156 RNU3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-03-12 +HGNC:10192 RNU4-1 RNA, U4 small nuclear 1 non-coding RNA RNA, small nuclear Approved 12q24.31 12q24.31 "U4BL|U4" "RNU4B2|RNU4A" "RNA, U4B2 small nuclear|RNA, U4A small nuclear" Small nuclear RNAs 849 1999-12-14 2008-05-01 2008-05-01 2014-11-19 26835 ENSG00000200795 uc031zpc.2 M15956 NR_003925 3582982 +HGNC:10193 RNU4-2 RNA, U4 small nuclear 2 non-coding RNA RNA, small nuclear Approved 12q24.31 12q24.31 "U4c|U4b|U4A" "RNU4C|RNU4-1B|RNU4B1" "RNA, U4C small nuclear|RNA, U4 small nuclear 1B|RNA, U4B1 small nuclear" Small nuclear RNAs 849 1999-12-14 2008-05-01 2008-05-01 2014-11-18 26834 ENSG00000202538 uc031zpb.1 M15957 NR_003137 3582982 +HGNC:10196 RNU4-3P RNA, U4 small nuclear 3, pseudogene pseudogene pseudogene Approved 18q12.2 18q12.2 "U4|U4/4" RNU4P3 RNA, U4 small nuclear pseudogene 3 1999-12-14 2009-11-06 2011-04-15 2014-11-18 26841 X02651 NG_001252 2582241 +HGNC:10197 RNU4-4P RNA, U4 small nuclear 4, pseudogene pseudogene pseudogene Approved 3q26.31 03q26.31 "U4|U4/5" RNU4P4 RNA, U4 small nuclear pseudogene 4 1999-12-14 2009-11-06 2011-04-15 2014-11-18 26840 ENSG00000201458 uc062qaj.1 X02652 NG_001251 2582241 +HGNC:10198 RNU4-5P RNA, U4 small nuclear 5, pseudogene pseudogene pseudogene Approved 10q25.1 10q25.1 "U4|U4/6" RNU4P5 RNA, U4 small nuclear pseudogene 5 1999-12-14 2009-11-06 2011-04-15 2015-02-04 26839 ENSG00000272160 uc057vwo.1 X02653 NG_001250 2582241 +HGNC:10199 RNU4-6P RNA, U4 small nuclear 6, pseudogene pseudogene pseudogene Approved Xp22.22 Xp22.22 "U4|U4/8" RNU4P6 RNA, U4 small nuclear pseudogene 6 1999-12-14 2009-11-06 2011-04-15 2014-11-19 26838 ENSG00000222736 uc022btj.1 X02654 NG_001249 2582241 +HGNC:10194 RNU4-7P RNA, U4 small nuclear 7, pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 "U4|U4/7" RNU4P1 RNA, U4 small nuclear pseudogene 1 (U4/7) 1990-06-11 2009-11-06 2011-04-15 2014-11-19 6069 ENSG00000201628 uc063sfz.1 M24746 NG_001186 2583518 +HGNC:10195 RNU4-8P RNA, U4 small nuclear 8, pseudogene pseudogene pseudogene Approved 2q11.2 02q11.2 "U4|U4/14" RNU4P2 RNA, U4 small nuclear pseudogene 2 (U4/14) 1990-06-11 2009-11-06 2011-04-15 2014-11-19 6070 ENSG00000201806 uc061maj.1 M24745 NG_001187 2583518 +HGNC:42507 RNU4-9P RNA, U4 small nuclear 9, pseudogene pseudogene pseudogene Approved 13q12.11 13q12.11 2011-08-02 2014-11-19 100862675 ENSG00000201821 uc058vut.1 NG_032105 +HGNC:42508 RNU4-10P RNA, U4 small nuclear 10, pseudogene pseudogene pseudogene Approved 13q22.1 13q22.1 2011-08-02 2014-11-19 100862676 ENSG00000201253 uc058xlg.1 NG_032106 +HGNC:46947 RNU4-11P RNA, U4 small nuclear 11, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 2013-04-03 2013-04-03 106481175 ENSG00000202157 uc063fcj.1 NG_043097 +HGNC:46948 RNU4-12P RNA, U4 small nuclear 12, pseudogene pseudogene pseudogene Approved 6q14.3 06q14.3 2013-04-03 2013-04-03 106479564 ENSG00000202103 uc063pyf.1 NG_044518 +HGNC:46949 RNU4-13P RNA, U4 small nuclear 13, pseudogene pseudogene pseudogene Approved 17q23.1 17q23.1 2013-04-03 2013-04-03 106481763 ENSG00000200889 uc060icp.1 NG_043711 +HGNC:46950 RNU4-14P RNA, U4 small nuclear 14, pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 2013-04-03 2013-04-03 106481176 ENSG00000222790 uc063hun.1 NG_043106 +HGNC:46951 RNU4-15P RNA, U4 small nuclear 15, pseudogene pseudogene pseudogene Approved 9q21.32 09q21.32 2013-04-03 2013-04-03 106479565 ENSG00000199483 uc064tyx.1 NG_044527 +HGNC:46952 RNU4-16P RNA, U4 small nuclear 16, pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 2013-04-03 2013-04-03 106479566 ENSG00000201607 uc064fmi.1 NG_045881 +HGNC:46953 RNU4-17P RNA, U4 small nuclear 17, pseudogene pseudogene pseudogene Approved 18q21.32 18q21.32 2013-04-03 2013-04-03 106481177 ENSG00000202468 uc060pry.1 NG_045319 +HGNC:46954 RNU4-18P RNA, U4 small nuclear 18, pseudogene pseudogene pseudogene Approved 6q23.2 06q23.2 2013-04-03 2013-04-03 106480545 ENSG00000252560 uc063rkc.1 NG_044175 +HGNC:46955 RNU4-19P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:46956 RNU4-20P RNA, U4 small nuclear 20, pseudogene pseudogene pseudogene Approved 12q14.1 12q14.1 2013-04-03 2013-04-03 106479567 ENSG00000202471 uc058qff.1 NG_044540 +HGNC:46957 RNU4-21P RNA, U4 small nuclear 21, pseudogene pseudogene pseudogene Approved 1q42.13 01q42.13 2013-04-03 2013-04-03 106481178 ENSG00000199672 uc057qgh.1 NG_045324 +HGNC:46958 RNU4-22P RNA, U4 small nuclear 22, pseudogene pseudogene pseudogene Approved 14q31.3 14q31.3 2013-04-03 2013-04-03 107057646 ENSG00000222990 uc059ecg.1 NG_046352 +HGNC:46959 RNU4-23P RNA, U4 small nuclear 23, pseudogene pseudogene pseudogene Approved 11q24.1 11q24.1 2013-04-03 2013-04-03 106479568 ENSG00000199709 uc058ioo.1 NG_045889 +HGNC:46960 RNU4-24P RNA, U4 small nuclear 24, pseudogene pseudogene pseudogene Approved 12q23.1 12q23.1 2013-04-03 2013-04-03 106481179 ENSG00000201435 uc021rca.1 NG_045327 +HGNC:46961 RNU4-25P RNA, U4 small nuclear 25, pseudogene pseudogene pseudogene Approved 8q24.21 08q24.21 2013-04-03 2014-06-20 106481870 ENSG00000222501 uc022bbi.1 NG_044538 +HGNC:46962 RNU4-26P RNA, U4 small nuclear 26, pseudogene pseudogene pseudogene Approved 9p21.3 09p21.3 2013-04-03 2013-04-03 106479569 ENSG00000222202 uc022bdz.1 NG_044556 +HGNC:46963 RNU4-27P RNA, U4 small nuclear 27, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 2013-04-03 2013-04-03 106481180 ENSG00000222821 uc057eut.1 NG_043140 +HGNC:46964 RNU4-28P RNA, U4 small nuclear 28, pseudogene pseudogene pseudogene Approved 1p36.13 01p36.13 2013-04-03 2013-04-03 106479570 ENSG00000201609 uc057cwy.1 NG_044562 +HGNC:46965 RNU4-29P RNA, U4 small nuclear 29, pseudogene pseudogene pseudogene Approved 9q21.32 09q21.32 2013-04-03 2013-04-03 106481181 ENSG00000251752 uc064tyu.1 NG_043148 +HGNC:46966 RNU4-30P RNA, U4 small nuclear 30, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 2013-04-03 2013-04-03 106479571 ENSG00000222177 uc021tke.1 NG_044572 +HGNC:46967 RNU4-31P RNA, U4 small nuclear 31, pseudogene pseudogene pseudogene Approved 7q36.3 07q36.3 2013-04-03 2013-04-03 106480546 ENSG00000206938 uc064jqz.1 NG_044184 +HGNC:46968 RNU4-32P RNA, U4 small nuclear 32, pseudogene pseudogene pseudogene Approved 12q24.11 12q24.11 2013-04-03 2013-04-03 106479572 ENSG00000200274 uc058szq.1 NG_044581 +HGNC:46969 RNU4-33P RNA, U4 small nuclear 33, pseudogene pseudogene pseudogene Approved 4q26 04q26 2013-04-03 2013-04-03 107080655 ENSG00000201186 uc062zgl.1 NG_046568 +HGNC:46970 RNU4-34P RNA, U4 small nuclear 34, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-04-03 2013-04-03 106480385 ENSG00000222363 uc060div.1 NG_042911 +HGNC:46971 RNU4-35P RNA, U4 small nuclear 35, pseudogene pseudogene pseudogene Approved 6q22.31 06q22.31 2013-04-03 2013-04-03 106481182 ENSG00000199458 uc063raq.1 NG_043154 +HGNC:46972 RNU4-36P RNA, U4 small nuclear 36, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 2013-04-03 2013-04-03 106479573 ENSG00000201164 uc059wgw.1 NG_044590 +HGNC:46973 RNU4-37P RNA, U4 small nuclear 37, pseudogene pseudogene pseudogene Approved 8q23.3 08q23.3 2013-04-03 2013-04-03 106481183 ENSG00000222146 uc064ppv.1 NG_043162 +HGNC:46974 RNU4-38P RNA, U4 small nuclear 38, pseudogene pseudogene pseudogene Approved 3q26.2 03q26.2 2013-04-03 2013-04-03 106479574 ENSG00000201342 uc062pvy.1 NG_045906 +HGNC:46975 RNU4-39P RNA, U4 small nuclear 39, pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 2013-04-03 2013-04-03 106479575 ENSG00000199325 uc058dzn.1 NG_044608 +HGNC:46976 RNU4-40P RNA, U4 small nuclear 40, pseudogene pseudogene pseudogene Approved 20q11.23 20q11.23 2013-04-03 2013-04-03 106479576 ENSG00000201221 uc061wrv.1 NG_045911 +HGNC:46977 RNU4-41P RNA, U4 small nuclear 41, pseudogene pseudogene pseudogene Approved 12q23.1 12q23.1 2013-04-03 2013-04-03 106481184 ENSG00000201296 uc058sbz.1 NG_043170 +HGNC:46978 RNU4-42P RNA, U4 small nuclear 42, pseudogene pseudogene pseudogene Approved 1q23.2 01q23.2 2013-04-03 2013-04-03 106479577 ENSG00000201608 uc057mku.1 NG_044625 +HGNC:46979 RNU4-43P RNA, U4 small nuclear 43, pseudogene pseudogene pseudogene Approved 5p14.1 05p14.1 2013-04-03 2013-04-03 106481185 ENSG00000222560 uc063cpy.1 NG_043178 +HGNC:46980 RNU4-44P RNA, U4 small nuclear 44, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2013-04-03 2013-04-03 106479578 ENSG00000199920 uc065ben.1 NG_044632 +HGNC:46981 RNU4-45P RNA, U4 small nuclear 45, pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 2013-04-03 2013-04-03 106481186 ENSG00000202339 uc061zfv.1 NG_043186 +HGNC:46982 RNU4-46P RNA, U4 small nuclear 46, pseudogene pseudogene pseudogene Approved 16p12.3 16p12.3 2013-04-03 2013-04-03 107048985 ENSG00000222750 uc059rmt.1 NG_046349 +HGNC:46983 RNU4-47P RNA, U4 small nuclear 47, pseudogene pseudogene pseudogene Approved 17q25.2 17q25.2 2013-04-03 2013-04-03 106479579 ENSG00000222808 uc060kou.1 NG_044640 +HGNC:46984 RNU4-48P RNA, U4 small nuclear 48, pseudogene pseudogene pseudogene Approved 2q14.3 02q14.3 2013-04-03 2013-04-03 106479580 ENSG00000202429 uc061npu.1 NG_044646 +HGNC:46985 RNU4-49P RNA, U4 small nuclear 49, pseudogene pseudogene pseudogene Approved 2p16.3 02p16.3 2013-04-03 2013-04-03 106481187 ENSG00000251889 uc061izv.1 NG_045029 +HGNC:46986 RNU4-50P RNA, U4 small nuclear 50, pseudogene pseudogene pseudogene Approved 8q12.1 08q12.1 2013-04-03 2013-04-03 106481871 ENSG00000201231 uc064ncb.1 NG_045888 +HGNC:46987 RNU4-51P RNA, U4 small nuclear 51, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 2013-04-03 2013-04-03 106479581 ENSG00000201076 uc061jlm.1 NG_045932 +HGNC:46988 RNU4-52P RNA, U4 small nuclear 52, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 2013-04-03 2013-04-03 106481188 ENSG00000206936 uc064zem.1 NG_043205 +HGNC:46989 RNU4-53P RNA, U4 small nuclear 53, pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 2013-04-03 2013-04-03 106479582 ENSG00000222760 uc064taq.1 NG_044660 +HGNC:46990 RNU4-54P RNA, U4 small nuclear 54, pseudogene pseudogene pseudogene Approved 12p11.22 12p11.22 2013-04-03 2013-04-03 106479583 ENSG00000252237 uc058mhn.1 NG_044667 +HGNC:46991 RNU4-55P RNA, U4 small nuclear 55, pseudogene pseudogene pseudogene Approved 11q22.3 11q22.3 2013-04-03 2013-04-03 106481189 ENSG00000222663 uc058gyw.1 NG_045366 +HGNC:46992 RNU4-56P RNA, U4 small nuclear 56, pseudogene pseudogene pseudogene Approved 3p22.1 03p22.1 2013-04-03 2013-04-03 106480547 ENSG00000201570 uc062ikr.1 NG_045752 +HGNC:46993 RNU4-57P RNA, U4 small nuclear 57, pseudogene pseudogene pseudogene Approved 1q41 01q41 2013-04-03 2013-04-03 106479584 ENSG00000251789 uc057psb.1 NG_044672 +HGNC:46994 RNU4-58P RNA, U4 small nuclear 58, pseudogene pseudogene pseudogene Approved 16q21 16q21 2013-04-03 2013-04-03 106481190 ENSG00000200062 uc059vev.1 NG_043222 +HGNC:46995 RNU4-59P RNA, U4 small nuclear 59, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 2013-04-03 2013-04-03 106481764 ENSG00000201317 uc057ihx.1 NG_045551 +HGNC:46996 RNU4-60P RNA, U4 small nuclear 60, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 2013-04-03 2013-04-03 106479585 ENSG00000253048 uc060zhu.1 NG_044681 +HGNC:46997 RNU4-61P RNA, U4 small nuclear 61, pseudogene pseudogene pseudogene Approved 1p33 01p33 2013-04-03 2013-04-03 106481191 ENSG00000223175 uc057gje.1 NG_043234 +HGNC:46998 RNU4-62P RNA, U4 small nuclear 62, pseudogene pseudogene pseudogene Approved 3q13.33 03q13.33 2013-04-03 2013-04-03 106479586 ENSG00000222057 uc062myl.1 NG_045952 +HGNC:46999 RNU4-63P RNA, U4 small nuclear 63, pseudogene pseudogene pseudogene Approved 2p21 02p21 2013-04-03 2013-04-03 106479587 ENSG00000223245 uc021vgj.1 NG_044700 +HGNC:47000 RNU4-64P RNA, U4 small nuclear 64, pseudogene pseudogene pseudogene Approved 4q35.1 04q35.1 2013-04-03 2013-04-03 106481872 ENSG00000222727 uc063bnk.1 NG_044553 +HGNC:47001 RNU4-65P RNA, U4 small nuclear 65, pseudogene pseudogene pseudogene Approved 12q15 12q15 2013-04-03 2013-04-03 106481192 ENSG00000222405 uc058qxh.1 NG_043243 +HGNC:47002 RNU4-66P RNA, U4 small nuclear 66, pseudogene pseudogene pseudogene Approved 6q13 06q13 2013-04-03 2013-04-03 106479588 ENSG00000202069 uc063pmr.1 NG_044710 +HGNC:47003 RNU4-67P RNA, U4 small nuclear 67, pseudogene pseudogene pseudogene Approved 12p12.1 12p12.1 2013-04-03 2013-04-03 106481193 ENSG00000201439 uc058mba.1 NG_043254 +HGNC:47004 RNU4-68P RNA, U4 small nuclear 68, pseudogene pseudogene pseudogene Approved 14q32.33 14q32.33 2013-04-03 2013-04-03 106479589 ENSG00000201184 uc059fsd.1 NG_045958 +HGNC:47005 RNU4-69P RNA, U4 small nuclear 69, pseudogene pseudogene pseudogene Approved 5q23.1 05q23.1 2013-04-03 2013-04-03 106479590 ENSG00000222609 uc063gio.1 NG_044727 +HGNC:47006 RNU4-70P RNA, U4 small nuclear 70, pseudogene pseudogene pseudogene Approved 6q16.1 06q16.1 2013-04-03 2013-04-03 106480548 ENSG00000207309 uc063qdz.1 NG_044196 +HGNC:47007 RNU4-71P RNA, U4 small nuclear 71, pseudogene pseudogene pseudogene Approved 8p21.2 08p21.2 2013-04-03 2013-04-03 106481194 ENSG00000252067 uc064lfv.1 NG_043263 +HGNC:47008 RNU4-72P RNA, U4 small nuclear 72, pseudogene pseudogene pseudogene Approved 6q14.3 06q14.3 2013-04-03 2013-04-03 106479591 ENSG00000222686 uc063pyd.1 NG_045191 +HGNC:47009 RNU4-73P RNA, U4 small nuclear 73, pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 2013-04-03 2013-04-03 106481195 ENSG00000200034 uc061goq.1 NG_045033 +HGNC:47010 RNU4-74P RNA, U4 small nuclear 74, pseudogene pseudogene pseudogene Approved 7q34 07q34 2013-04-03 2013-04-03 106479592 ENSG00000223212 uc064iqd.1 NG_045966 +HGNC:47011 RNU4-75P RNA, U4 small nuclear 75, pseudogene pseudogene pseudogene Approved 1p21.2 01p21.2 2013-04-03 2013-04-03 106479593 ENSG00000201491 uc057ipq.1 NG_044752 +HGNC:47012 RNU4-76P RNA, U4 small nuclear 76, pseudogene pseudogene pseudogene Approved 6q22.31 06q22.31 2013-04-03 2013-04-03 106480549 ENSG00000201379 uc063rar.1 NG_044201 +HGNC:47013 RNU4-77P RNA, U4 small nuclear 77, pseudogene pseudogene pseudogene Approved 1q42.2 01q42.2 2013-04-03 2013-04-03 106481196 ENSG00000252501 uc021pko.1 NG_043282 +HGNC:47014 RNU4-78P RNA, U4 small nuclear 78, pseudogene pseudogene pseudogene Approved 3p22.1 03p22.1 2013-04-03 2013-04-03 106479594 ENSG00000222872 uc021wwj.1 NG_045970 +HGNC:47015 RNU4-79P RNA, U4 small nuclear 79, pseudogene pseudogene pseudogene Approved 4q32.1 04q32.1 2013-04-03 2013-04-03 106481197 ENSG00000199634 uc063apr.1 NG_043291 +HGNC:47016 RNU4-80P RNA, U4 small nuclear 80, pseudogene pseudogene pseudogene Approved 15q22.2 15q22.2 2013-04-03 2013-04-03 106480386 ENSG00000200070 uc059jue.1 NG_045245 +HGNC:47017 RNU4-81P RNA, U4 small nuclear 81, pseudogene pseudogene pseudogene Approved Xq13.1 Xq13.1 2013-04-03 2013-04-03 106479595 ENSG00000200431 uc022byp.1 NG_045975 +HGNC:47018 RNU4-82P RNA, U4 small nuclear 82, pseudogene pseudogene pseudogene Approved 9q33.3 09q33.3 2013-04-03 2013-04-03 106481198 ENSG00000199313 uc064vqr.1 NG_045389 +HGNC:47019 RNU4-83P RNA, U4 small nuclear 83, pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 2013-04-03 2013-04-03 106479596 ENSG00000222795 uc064pck.1 NG_044778 +HGNC:47020 RNU4-84P RNA, U4 small nuclear 84, pseudogene pseudogene pseudogene Approved 2q11.2 02q11.2 2013-04-03 2013-04-03 106481873 ENSG00000201070 uc061mes.1 NG_045179 +HGNC:47021 RNU4-85P RNA, U4 small nuclear 85, pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 2013-04-03 2013-04-03 106479597 ENSG00000201545 uc062hkw.1 NG_044785 +HGNC:47022 RNU4-86P RNA, U4 small nuclear 86, pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 2013-04-03 2013-04-03 106481199 ENSG00000222067 uc021qrx.1 NG_043305 +HGNC:47023 RNU4-87P RNA, U4 small nuclear 87, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 2013-04-03 2013-04-03 106479598 ENSG00000200974 uc063ats.1 NG_045983 +HGNC:47024 RNU4-88P RNA, U4 small nuclear 88, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-04-03 2013-04-03 106479599 ENSG00000223152 uc021oom.1 NG_044802 +HGNC:47025 RNU4-89P RNA, U4 small nuclear 89, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-04-03 2015-02-04 106481200 ENSG00000272359 uc062sci.1 NG_043314 +HGNC:47026 RNU4-90P RNA, U4 small nuclear 90, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 2013-04-03 2013-04-03 106479600 ENSG00000199643 uc063fip.1 NG_044810 +HGNC:47027 RNU4-91P RNA, U4 small nuclear 91, pseudogene pseudogene pseudogene Approved 3q26.31 03q26.31 2013-04-03 2013-04-03 106481201 ENSG00000201648 uc021xhr.2 NG_045399 +HGNC:47028 RNU4-92P RNA, U4 small nuclear 92, pseudogene pseudogene pseudogene Approved 14q31.3 14q31.3 2013-04-03 2013-04-03 106479601 ENSG00000200653 uc059edl.1 NG_044820 +HGNC:34016 RNU4ATAC RNA, U4atac small nuclear (U12-dependent splicing) non-coding RNA RNA, small nuclear Approved 2q14.2 02q14.2 RNU4ATAC1 Small nuclear RNAs 849 2008-03-12 2015-02-04 100151683 ENSG00000264229 uc010yzd.2 NR_023343 601428 265258 +HGNC:39003 RNU4ATAC2P RNA, U4atac small nuclear 2, pseudogene pseudogene pseudogene Approved 5q33.3 05q33.3 2010-09-17 2014-11-19 100873889 ENSG00000221601 uc063jfp.1 NG_032648 +HGNC:42575 RNU4ATAC3P RNA, U4atac small nuclear 3, pseudogene pseudogene pseudogene Approved 13q31.3 13q31.3 2011-08-08 2011-08-08 106480753 ENSG00000252508 uc058xtc.1 NG_045588 +HGNC:46890 RNU4ATAC4P RNA, U4atac small nuclear 4, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-04-03 2013-04-03 106479539 ENSG00000252116 uc057hjo.1 NG_044315 +HGNC:46891 RNU4ATAC5P RNA, U4atac small nuclear 5, pseudogene pseudogene pseudogene Approved 11q24.1 11q24.1 2013-04-03 2013-04-03 106481156 ENSG00000253035 uc058ioc.1 NG_042935 +HGNC:46892 RNU4ATAC6P RNA, U4atac small nuclear 6, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-04-03 2013-04-03 106479540 ENSG00000252401 uc057slx.1 NG_044323 +HGNC:46893 RNU4ATAC7P RNA, U4atac small nuclear 7, pseudogene pseudogene pseudogene Approved 20q13.2 20q13.2 2013-04-03 2013-04-03 106480539 ENSG00000252089 uc021wez.1 NG_044131 +HGNC:46894 RNU4ATAC8P RNA, U4atac small nuclear 8, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 2013-04-03 2013-04-03 106481157 ENSG00000252005 uc057hpe.1 NG_042943 +HGNC:46895 RNU4ATAC9P RNA, U4atac small nuclear 9, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 2013-04-03 2013-04-03 106479541 ENSG00000252955 uc062xez.1 NG_044333 +HGNC:46896 RNU4ATAC10P RNA, U4atac small nuclear 10, pseudogene pseudogene pseudogene Approved 11q24.1 11q24.1 2013-04-03 2013-04-03 106479542 ENSG00000252776 uc021qrp.1 NG_044341 +HGNC:46897 RNU4ATAC11P RNA, U4atac small nuclear 11, pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 2013-04-03 2013-04-03 106481158 ENSG00000251748 uc064sqw.1 NG_045260 +HGNC:46898 RNU4ATAC12P RNA, U4atac small nuclear 12, pseudogene pseudogene pseudogene Approved 12q24.33 12q24.33 2013-04-03 2013-04-03 106481865 ENSG00000252269 uc058vni.1 NG_044497 +HGNC:46899 RNU4ATAC13P RNA, U4atac small nuclear 13, pseudogene pseudogene pseudogene Approved 5q22.2 05q22.2 2013-04-03 2013-04-03 106479543 ENSG00000251741 uc063gca.1 NG_044351 +HGNC:46900 RNU4ATAC14P RNA, U4atac small nuclear 14, pseudogene pseudogene pseudogene Approved 14q24.3 14q24.3 2013-04-03 2013-04-03 106481159 ENSG00000252013 uc059dnl.1 NG_042959 +HGNC:46901 RNU4ATAC15P RNA, U4atac small nuclear 15, pseudogene pseudogene pseudogene Approved 9p21.1 09p21.1 2013-04-03 2013-04-03 106479544 ENSG00000252224 uc064sol.1 NG_044361 +HGNC:46902 RNU4ATAC16P RNA, U4atac small nuclear 16, pseudogene pseudogene pseudogene Approved 12p13.33 12p13.33 2013-04-03 2013-04-03 106481160 ENSG00000221439 uc021qsu.1 NG_045266 +HGNC:46903 RNU4ATAC17P RNA, U4atac small nuclear 17, pseudogene pseudogene pseudogene Approved 3p26.1 03p26.1 2013-04-03 2013-04-03 106480696 ENSG00000253081 uc021wsp.1 NG_045425 +HGNC:46904 RNU4ATAC18P RNA, U4atac small nuclear 18, pseudogene pseudogene pseudogene Approved 6q25.3 06q25.3 2013-04-03 2013-04-03 106481866 ENSG00000251988 uc063spg.1 NG_044506 +HGNC:10211 RNU5A-1 RNA, U5A small nuclear 1 non-coding RNA RNA, small nuclear Approved 15q22.31 15q22.31 "U5A|U5B1" "RNU5C|RNU5A" "RNA, U5C small nuclear|RNA, U5A small nuclear" Small nuclear RNAs 849 1999-12-14 2011-08-03 2011-08-03 2014-11-18 26831 ENSG00000199568 uc032chj.2 NR_002756 1310151 180691 +HGNC:42515 RNU5A-2P RNA, U5A small nuclear 2, pseudogene pseudogene pseudogene Approved 4q21.21 04q21.21 2011-08-03 2014-02-12 100873830 ENSG00000207065 uc062xrr.1 NG_032610 +HGNC:42519 RNU5A-3P RNA, U5A small nuclear 3, pseudogene pseudogene pseudogene Approved 8p12 08p12 2011-08-03 2015-02-04 100873831 ENSG00000254172 uc064ltf.1 NG_032611 +HGNC:42521 RNU5A-4P RNA, U5A small nuclear 4, pseudogene pseudogene pseudogene Approved 13q13.2 13q13.2 2011-08-03 2011-08-03 100873870 ENSG00000252397 uc058wjp.1 NG_032643 +HGNC:42525 RNU5A-5P RNA, U5A small nuclear 5, pseudogene pseudogene pseudogene Approved 1q42.2 01q42.2 2011-08-03 2011-08-03 100873835 ENSG00000222986 uc057qjq.1 NG_032615 +HGNC:42527 RNU5A-6P RNA, U5A small nuclear 6, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 2011-08-03 2011-08-03 100873871 ENSG00000206863 uc060nzx.1 NG_032644 +HGNC:42529 RNU5A-7P RNA, U5A small nuclear 7, pseudogene pseudogene pseudogene Approved 12q14.2 12q14.2 2011-08-03 2011-08-03 100873872 ENSG00000251788 uc058qjg.1 NG_032645 +HGNC:42530 RNU5A-8P RNA, U5A small nuclear 8, pseudogene pseudogene pseudogene Approved 1q32.2 01q32.2 2011-08-03 2011-08-03 100873838 ENSG00000200972 uc057pdb.1 NG_032618 +HGNC:10212 RNU5B-1 RNA, U5B small nuclear 1 non-coding RNA RNA, small nuclear Approved 15q22 15q22 U5B1 RNU5B RNA, U5B small nuclear Small nuclear RNAs 849 1999-12-14 2008-05-12 2008-05-12 2014-11-19 26832 ENSG00000200156 uc032chk.2 X04293 NR_002757 1310151 +HGNC:34182 RNU5B-2P RNA, U5B small nuclear 2, pseudogene pseudogene pseudogene Approved 3p22.1 03p22.1 2008-05-12 2011-08-03 2014-11-18 100147750 ENSG00000199906 uc062ilw.1 NG_007589 +HGNC:34183 RNU5B-3P RNA, U5B small nuclear 3, pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 2008-05-12 2011-08-03 2014-11-19 100147751 ENSG00000252410 uc062ixe.1 NG_007590 +HGNC:34184 RNU5B-4P RNA, U5B small nuclear 4, pseudogene pseudogene pseudogene Approved 5q31.2 05q31.2 2008-05-12 2011-08-03 2014-11-18 100147752 ENSG00000200378 uc063hrs.1 NG_007591 +HGNC:34185 RNU5B-5P RNA, U5B small nuclear 5, pseudogene pseudogene pseudogene Approved 9q33.3 09q33.3 2008-05-12 2011-08-03 2011-10-11 100147753 NG_007592 +HGNC:34186 RNU5B-6P RNA, U5B small nuclear 6, pseudogene pseudogene pseudogene Approved 10q25.1 10q25.1 2008-05-12 2011-08-03 2014-11-18 100147754 ENSG00000252574 uc057vwk.1 NG_007593 +HGNC:10214 RNU5D-1 RNA, U5D small nuclear 1 non-coding RNA RNA, small nuclear Approved 1p34.1 01p34.1 "U5DS|U5DL" RNU5D RNA, U5D small nuclear Small nuclear RNAs 849 1999-12-14 2011-08-03 2011-08-03 2011-08-03 26830 ENSG00000200169 uc031tzh.2 M77838 NR_002755 1310151 +HGNC:42534 RNU5D-2P RNA, U5D small nuclear 2, pseudogene pseudogene pseudogene Approved 9q34.13 09q34.13 2011-08-03 2011-08-03 100873841 ENSG00000252521 uc064wsf.1 NG_032621 +HGNC:10215 RNU5E-1 RNA, U5E small nuclear 1 non-coding RNA RNA, small nuclear Approved 1p36.22 01p36.22 U5E RNU5E RNA, U5E small nuclear Small nuclear RNAs 849 1999-12-14 2011-08-03 2011-08-03 2014-11-19 26829 ENSG00000199347 uc031ton.2 M77839 NR_002754 1310151 +HGNC:42511 RNU5E-2P RNA, U5E small nuclear 2, pseudogene pseudogene pseudogene Approved 1q42.3 01q42.3 2011-08-03 2015-02-04 100873827 NG_032607 +HGNC:42512 RNU5E-3P RNA, U5E small nuclear 3, pseudogene pseudogene pseudogene Approved 4p11 04p11 2011-08-03 2011-08-03 100873828 ENSG00000251722 uc062wlk.1 NG_032608 +HGNC:42513 RNU5E-4P RNA, U5E small nuclear 4, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 2011-08-03 2011-08-03 100873829 ENSG00000201801 uc057cii.1 NG_032609 +HGNC:42520 RNU5E-5P RNA, U5E small nuclear 5, pseudogene pseudogene pseudogene Approved 12q23.2 12q23.2 2011-08-03 2011-08-03 100873869 ENSG00000202249 uc058sha.1 NG_032642 +HGNC:42522 RNU5E-6P RNA, U5E small nuclear 6, pseudogene pseudogene pseudogene Approved 1p34.1 01p34.1 2011-08-03 2011-08-03 100873832 ENSG00000202444 uc057fwx.1 NG_032612 +HGNC:42526 RNU5E-7P RNA, U5E small nuclear 7, pseudogene pseudogene pseudogene Approved 2p24.3 02p24.3 2011-08-03 2011-08-03 100873836 ENSG00000202160 uc061gvi.1 NG_032616 +HGNC:42528 RNU5E-8P RNA, U5E small nuclear 8, pseudogene pseudogene pseudogene Approved 3q13.31 03q13.31 2011-08-03 2011-08-03 100873837 ENSG00000200372 uc062msf.1 NG_032617 +HGNC:42532 RNU5E-9P RNA, U5E small nuclear 9, pseudogene pseudogene pseudogene Approved 2q31.2 02q31.2 2011-08-03 2011-08-03 100873840 ENSG00000223096 uc061qbn.1 NG_032620 +HGNC:42533 RNU5E-10P RNA, U5E small nuclear 10, pseudogene pseudogene pseudogene Approved 11p11.2 11p11.2 2011-08-03 2011-08-03 100873888 ENSG00000200376 uc058bgd.1 NG_032647 +HGNC:10216 RNU5F-1 RNA, U5F small nuclear 1 non-coding RNA RNA, small nuclear Approved 1p34.1 01p34.1 RNU5F RNA, U5F small nuclear Small nuclear RNAs 849 1999-12-14 2011-08-03 2011-08-03 2014-11-19 26828 ENSG00000199377 uc031tzg.2 M77840 NR_002753 1310151 +HGNC:42510 RNU5F-2P RNA, U5F small nuclear 2, pseudogene pseudogene pseudogene Approved 1q25.2 01q25.2 2011-08-03 2011-08-03 100873826 ENSG00000251875 uc057nqa.1 NG_032606 +HGNC:42514 RNU5F-3P RNA, U5F small nuclear 3, pseudogene pseudogene pseudogene Approved 18p11.31 18p11.31 2011-08-03 2011-08-03 100873866 ENSG00000200637 uc021ugq.1 NG_032639 +HGNC:42516 RNU5F-4P RNA, U5F small nuclear 4, pseudogene pseudogene pseudogene Approved 12p11.21 12p11.21 2011-08-03 2011-08-03 100873867 ENSG00000252390 uc058mmq.1 NG_032640 +HGNC:42518 RNU5F-5P RNA, U5F small nuclear 5, pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 2011-08-03 2012-10-03 100873868 NG_032641 +HGNC:42523 RNU5F-6P RNA, U5F small nuclear 6, pseudogene pseudogene pseudogene Approved 1q23.3 01q23.3 2011-08-03 2011-08-03 100873833 ENSG00000199849 uc057mwx.1 NG_032613 +HGNC:42524 RNU5F-7P RNA, U5F small nuclear 7, pseudogene pseudogene pseudogene Approved Xp22.2 Xp22.2 2011-08-03 2011-08-03 100873834 ENSG00000200566 uc064ydo.1 NG_032614 +HGNC:42531 RNU5F-8P RNA, U5F small nuclear 8, pseudogene pseudogene pseudogene Approved 1q43 01q43 2011-08-03 2011-08-03 100873839 ENSG00000251750 uc057qsb.1 NG_032619 +HGNC:10227 RNU6-1 RNA, U6 small nuclear 1 non-coding RNA RNA, small nuclear Approved 15q23 15q23 "U6|U6-1" RNU6A RNA, U6A small nuclear Small nuclear RNAs 849 1999-12-14 2008-05-27 2008-05-27 2014-11-19 26827 ENSG00000206625 uc032chq.1 M14486 NR_004394 "3360322|12711679" 180692 +HGNC:34270 RNU6-2 RNA, U6 small nuclear 2 non-coding RNA RNA, small nuclear Approved 19p13.3 19p13.3 U6-2 Small nuclear RNAs 849 2008-06-10 2013-05-01 2013-05-01 2013-09-13 103625684 ENSG00000207357 NR_125730 12711679 +HGNC:34275 RNU6-3P RNA, U6 small nuclear 3, pseudogene pseudogene pseudogene Approved Xq27.1 Xq27.1 U6-3 RNU6-3 RNA, U6 small nuclear 3 2008-06-10 2013-05-01 2013-05-01 2013-05-15 106478919 ENSG00000207041 NG_043487 12711679 +HGNC:34253 RNU6-4P RNA, U6 small nuclear 4, pseudogene pseudogene pseudogene Approved 3q26.33 03q26.33 U6-4 RNU6-4 RNA, U6 small nuclear 4 2008-06-10 2013-05-01 2013-05-01 2013-09-13 106478914 ENSG00000206932 uc021umd.1 NG_043454 12711679 +HGNC:34249 RNU6-5P RNA, U6 small nuclear 5, pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 U6-5 RNU6-5 RNA, U6 small nuclear 5 2008-06-10 2013-05-01 2013-05-01 2013-05-15 106478913 ENSG00000206965 NG_045051 12711679 +HGNC:10228 RNU6-6P RNA, U6 small nuclear 6, pseudogene pseudogene pseudogene Approved 10p13 10p13 U6-6 "RNU6B|RNU6-6" "RNA, U6B small nuclear|RNA, U6 small nuclear 6" 1999-12-14 2013-05-01 2013-05-01 2015-02-04 26826 ENSG00000272055 uc032hjb.1 K03099 NR_002752 12711679 +HGNC:34284 RNU6-7 RNA, U6 small nuclear 7 non-coding RNA RNA, small nuclear Approved 14q12 14q12 U6-7 Small nuclear RNAs 849 2008-06-10 2013-05-01 2013-05-01 2013-09-13 101954275 ENSG00000201654 NR_104084 12711679 +HGNC:34285 RNU6-8 RNA, U6 small nuclear 8 non-coding RNA RNA, small nuclear Approved 14q12 14q12 U6-8 Small nuclear RNAs 849 2008-06-10 2013-05-01 2013-05-01 2013-09-13 101954278 ENSG00000202337 NR_104088 12711679 +HGNC:34269 RNU6-9 RNA, U6 small nuclear 9 non-coding RNA RNA, small nuclear Approved 19p13.3 19p13.3 U6-9 Small nuclear RNAs 849 2008-06-10 2013-05-01 2013-05-01 2013-09-13 101954271 ENSG00000207507 NR_104080 12711679 +HGNC:34254 RNU6-10P RNA, U6 small nuclear 10, pseudogene pseudogene pseudogene Approved 7q21.2 07q21.2 RNU6-10 RNA, U6 small nuclear 10 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873745 ENSG00000206763 NR_046484 +HGNC:34255 RNU6-11P RNA, U6 small nuclear 11, pseudogene pseudogene pseudogene Approved 7q31.32 07q31.32 RNU6-11 RNA, U6 small nuclear 11 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478915 ENSG00000201104 NG_045055 +HGNC:34256 RNU6-12P RNA, U6 small nuclear 12, pseudogene pseudogene pseudogene Approved 8q24.12 08q24.12 RNU6-12 RNA, U6 small nuclear 12 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106481973 ENSG00000207334 NG_043356 +HGNC:34257 RNU6-13P RNA, U6 small nuclear 13, pseudogene pseudogene pseudogene Approved 8q12.1 08q12.1 RNU6-13 RNA, U6 small nuclear 13 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106480423 ENSG00000206975 NG_043232 +HGNC:34258 RNU6-14P RNA, U6 small nuclear 14, pseudogene pseudogene pseudogene Approved 9p22.3 09p22.3 RNU6-14 RNA, U6 small nuclear 14 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873746 ENSG00000207360 NR_046485 +HGNC:34259 RNU6-15P RNA, U6 small nuclear 15, pseudogene pseudogene pseudogene Approved 10p12.31 10p12.31 RNU6-15 RNA, U6 small nuclear 15 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100302741 ENSG00000207264 NR_028372 +HGNC:34260 RNU6-16P RNA, U6 small nuclear 16, pseudogene pseudogene pseudogene Approved 11q14.3 11q14.3 RNU6-16 RNA, U6 small nuclear 16 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873753 ENSG00000207113 NR_046486 +HGNC:34261 RNU6-17P RNA, U6 small nuclear 17, pseudogene pseudogene pseudogene Approved 15q13.2 15q13.2 RNU6-17 RNA, U6 small nuclear 17 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106480705 ENSG00000206972 NG_043449 +HGNC:34262 RNU6-18P RNA, U6 small nuclear 18, pseudogene pseudogene pseudogene Approved 15q13.3 15q13.3 RNU6-18 RNA, U6 small nuclear 18 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478916 ENSG00000207257 NG_043466 +HGNC:34263 RNU6-19P RNA, U6 small nuclear 19, pseudogene pseudogene pseudogene Approved 15q22.31 15q22.31 RNU6-19 RNA, U6 small nuclear 19 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873754 ENSG00000207449 NR_046487 +HGNC:34264 RNU6-20P RNA, U6 small nuclear 20, pseudogene pseudogene pseudogene Approved 16q21 16q21 RNU6-20 RNA, U6 small nuclear 20 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106480706 ENSG00000206833 NG_043458 +HGNC:34265 RNU6-21P RNA, U6 small nuclear 21, pseudogene pseudogene pseudogene Approved 16q21 16q21 RNU6-21 RNA, U6 small nuclear 21 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100302738 ENSG00000207441 NR_028369 +HGNC:34266 RNU6-22P RNA, U6 small nuclear 22, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 RNU6-22 RNA, U6 small nuclear 22 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478917 ENSG00000207083 NG_044992 +HGNC:34267 RNU6-23P RNA, U6 small nuclear 23, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 RNU6-23 RNA, U6 small nuclear 23 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873755 ENSG00000200153 NR_046488 +HGNC:34268 RNU6-24P RNA, U6 small nuclear 24, pseudogene pseudogene pseudogene Approved 17q25.1 17q25.1 RNU6-24 RNA, U6 small nuclear 24 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106480707 ENSG00000207169 NG_043465 +HGNC:34251 RNU6-25P RNA, U6 small nuclear 25, pseudogene pseudogene pseudogene Approved 3q29 03q29 RNU6-25 RNA, U6 small nuclear 25 2008-06-10 2013-05-01 2013-05-01 2013-09-13 106480704 ENSG00000206600 uc032axs.1 NG_043441 +HGNC:34252 RNU6-26P RNA, U6 small nuclear 26, pseudogene pseudogene pseudogene Approved 3q12.1 03q12.1 RNU6-26 RNA, U6 small nuclear 26 2008-06-10 2013-05-01 2013-05-01 2013-09-13 100873741 ENSG00000206712 uc032axt.1 NR_046483 +HGNC:34271 RNU6-27P RNA, U6 small nuclear 27, pseudogene pseudogene pseudogene Approved 20p12.1 20p12.1 RNU6-27 RNA, U6 small nuclear 27 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478918 ENSG00000251955 NG_043479 +HGNC:34272 RNU6-28P RNA, U6 small nuclear 28, pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 RNU6-28 RNA, U6 small nuclear 28 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873756 ENSG00000199248 NR_046489 +HGNC:34273 RNU6-29P RNA, U6 small nuclear 29, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 RNU6-29 RNA, U6 small nuclear 29 2008-06-10 2013-05-01 2013-05-01 2013-05-01 107131122 ENSG00000207367 NG_046640 +HGNC:34274 RNU6-30P RNA, U6 small nuclear 30, pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 RNU6-30 RNA, U6 small nuclear 30 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873747 ENSG00000207291 NR_046490 +HGNC:34250 RNU6-31P RNA, U6 small nuclear 31, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 RNU6-31 RNA, U6 small nuclear 31 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873740 ENSG00000207116 NR_046482 +HGNC:34276 RNU6-32P RNA, U6 small nuclear 32, pseudogene pseudogene pseudogene Approved 4p14 04p14 RNU6-32 RNA, U6 small nuclear 32 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106480708 ENSG00000206675 NG_045462 +HGNC:34277 RNU6-33P RNA, U6 small nuclear 33, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 RNU6-33 RNA, U6 small nuclear 33 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873748 ENSG00000207524 NR_046491 +HGNC:34278 RNU6-34P RNA, U6 small nuclear 34, pseudogene pseudogene pseudogene Approved 4q22.3 04q22.3 RNU6-34 RNA, U6 small nuclear 34 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873749 ENSG00000201744 NR_046492 +HGNC:34279 RNU6-35P RNA, U6 small nuclear 35, pseudogene pseudogene pseudogene Approved 4q25 04q25 RNU6-35 RNA, U6 small nuclear 35 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873750 ENSG00000207260 NR_046493 +HGNC:34280 RNU6-36P RNA, U6 small nuclear 36, pseudogene pseudogene pseudogene Approved 12q23.1 12q23.1 RNU6-36 RNA, U6 small nuclear 36 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873757 ENSG00000206899 NR_046494 +HGNC:34281 RNU6-37P RNA, U6 small nuclear 37, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 RNU6-37 RNA, U6 small nuclear 37 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478920 ENSG00000199562 NG_045472 +HGNC:34282 RNU6-38P RNA, U6 small nuclear 38, pseudogene pseudogene pseudogene Approved 13q22.2 13q22.2 RNU6-38 RNA, U6 small nuclear 38 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106480709 ENSG00000206812 NG_043476 +HGNC:34283 RNU6-39P RNA, U6 small nuclear 39, pseudogene pseudogene pseudogene Approved 18q22.1 18q22.1 RNU6-39 RNA, U6 small nuclear 39 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873758 ENSG00000207072 NR_046495 +HGNC:34248 RNU6-40P RNA, U6 small nuclear 40, pseudogene pseudogene pseudogene Approved 1p35.2 01p35.2 RNU6-40 RNA, U6 small nuclear 40 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106480703 ENSG00000206981 NG_043434 +HGNC:34247 RNU6-41P RNA, U6 small nuclear 41, pseudogene pseudogene pseudogene Approved 1q25.3 01q25.3 RNU6-41 RNA, U6 small nuclear 41 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478912 ENSG00000207472 NG_043436 +HGNC:34286 RNU6-42P RNA, U6 small nuclear 42, pseudogene pseudogene pseudogene Approved 3q29 03q29 RNU6-42 RNA, U6 small nuclear 42 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100302742 ENSG00000206892 NR_028373 +HGNC:34287 RNU6-43P RNA, U6 small nuclear 43, pseudogene pseudogene pseudogene Approved 10q24.32 10q24.32 RNU6-43 RNA, U6 small nuclear 43 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478921 ENSG00000207029 NG_044991 +HGNC:34288 RNU6-44P RNA, U6 small nuclear 44, pseudogene pseudogene pseudogene Approved 11q23.1 11q23.1 RNU6-44 RNA, U6 small nuclear 44 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478922 ENSG00000206772 NG_043511 +HGNC:34289 RNU6-45P RNA, U6 small nuclear 45, pseudogene pseudogene pseudogene Approved 11q13.1 11q13.1 RNU6-45 RNA, U6 small nuclear 45 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873759 ENSG00000207200 NR_046496 +HGNC:34290 RNU6-46P RNA, U6 small nuclear 46, pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 RNU6-46 RNA, U6 small nuclear 46 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100873760 ENSG00000206587 NR_046497 +HGNC:34291 RNU6-47P RNA, U6 small nuclear 47, pseudogene pseudogene pseudogene Approved 5q21.3 05q21.3 RNU6-47 RNA, U6 small nuclear 47 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106480710 ENSG00000206593 NG_043484 +HGNC:34292 RNU6-48P RNA, U6 small nuclear 48, pseudogene pseudogene pseudogene Approved 1p36.11 01p36.11 RNU6-48 RNA, U6 small nuclear 48 2008-06-10 2013-05-01 2013-05-01 2013-05-01 100887744 ENSG00000206888 NR_049779 +HGNC:34293 RNU6-49P RNA, U6 small nuclear 49, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 RNU6-49 RNA, U6 small nuclear 49 2008-06-10 2013-05-01 2013-05-01 2013-05-01 106478923 ENSG00000206983 NG_043520 +HGNC:10229 RNU6-50P RNA, U6 small nuclear 50, pseudogene pseudogene pseudogene Approved Xp11.3 Xp11.3 U6 "RNU6P1|RNU6-50" "RNA, U6 small nuclear pseudogene 1|RNA, U6 small nuclear 50" 1999-12-14 2013-05-01 2013-05-01 2014-11-19 26825 ENSG00000199226 K03026 NG_001248 2998934 +HGNC:42541 RNU6-51P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:42542 RNU6-52P RNA, U6 small nuclear 52, pseudogene pseudogene pseudogene Approved 13q12.11 13q12.11 RNU6-52 RNA, U6 small nuclear 52 2011-08-08 2013-05-01 2013-05-01 2015-02-04 100873761 NR_046927 +HGNC:42543 RNU6-53P RNA, U6 small nuclear 53, pseudogene pseudogene pseudogene Approved 13q12.3 13q12.3 RNU6-53 RNA, U6 small nuclear 53 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873762 ENSG00000202237 NR_046928 +HGNC:42544 RNU6-54P RNA, U6 small nuclear 54, pseudogene pseudogene pseudogene Approved 13q21.33 13q21.33 RNU6-54 RNA, U6 small nuclear 54 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106478986 ENSG00000202433 NG_043989 +HGNC:42545 RNU6-55P RNA, U6 small nuclear 55, pseudogene pseudogene pseudogene Approved 13q11 13q11 RNU6-55 RNA, U6 small nuclear 55 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873763 ENSG00000223024 NR_046929 +HGNC:42546 RNU6-56P RNA, U6 small nuclear 56, pseudogene pseudogene pseudogene Approved 13q13.3 13q13.3 RNU6-56 RNA, U6 small nuclear 56 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873764 ENSG00000252795 NR_046930 +HGNC:42547 RNU6-57P RNA, U6 small nuclear 57, pseudogene pseudogene pseudogene Approved 13q14.11 13q14.11 RNU6-57 RNA, U6 small nuclear 57 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873765 ENSG00000223280 NR_046931 +HGNC:42548 RNU6-58P RNA, U6 small nuclear 58, pseudogene pseudogene pseudogene Approved 13q12.12 13q12.12 RNU6-58 RNA, U6 small nuclear 58 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873766 ENSG00000252952 NR_046932 +HGNC:42549 RNU6-59P RNA, U6 small nuclear 59, pseudogene pseudogene pseudogene Approved 13q12.11 13q12.11 RNU6-59 RNA, U6 small nuclear 59 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873767 ENSG00000207518 NR_046933 +HGNC:42550 RNU6-60P RNA, U6 small nuclear 60, pseudogene pseudogene pseudogene Approved 13q14.2 13q14.2 RNU6-60 RNA, U6 small nuclear 60 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106480750 ENSG00000201662 NG_045579 +HGNC:42551 RNU6-61P RNA, U6 small nuclear 61, pseudogene pseudogene pseudogene Approved 13q31.1 13q31.1 RNU6-61 RNA, U6 small nuclear 61 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106480435 ENSG00000202398 NG_043337 +HGNC:42552 RNU6-62P RNA, U6 small nuclear 62, pseudogene pseudogene pseudogene Approved 13q32.1 13q32.1 RNU6-62 RNA, U6 small nuclear 62 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106478987 ENSG00000252335 NG_043992 +HGNC:42553 RNU6-63P RNA, U6 small nuclear 63, pseudogene pseudogene pseudogene Approved 13q12.2 13q12.2 RNU6-63 RNA, U6 small nuclear 63 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873768 ENSG00000252499 NR_046934 +HGNC:42554 RNU6-64P RNA, U6 small nuclear 64, pseudogene pseudogene pseudogene Approved 13q12.3 13q12.3 RNU6-64 RNA, U6 small nuclear 64 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873769 ENSG00000252928 NR_046935 +HGNC:42555 RNU6-65P RNA, U6 small nuclear 65, pseudogene pseudogene pseudogene Approved 13q14.3 13q14.3 RNU6-65 RNA, U6 small nuclear 65 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106480751 ENSG00000252141 NG_043802 +HGNC:42556 RNU6-66P RNA, U6 small nuclear 66, pseudogene pseudogene pseudogene Approved 13q22.1 13q22.1 RNU6-66 RNA, U6 small nuclear 66 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873770 ENSG00000200267 NR_046936 +HGNC:42557 RNU6-67P RNA, U6 small nuclear 67, pseudogene pseudogene pseudogene Approved 13q31.1 13q31.1 RNU6-67 RNA, U6 small nuclear 67 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873771 ENSG00000222791 NR_046937 +HGNC:42558 RNU6-68P RNA, U6 small nuclear 68, pseudogene pseudogene pseudogene Approved 13q14.13 13q14.13 RNU6-68 RNA, U6 small nuclear 68 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873772 ENSG00000252385 NR_046938 +HGNC:42559 RNU6-69P RNA, U6 small nuclear 69, pseudogene pseudogene pseudogene Approved 13q14.12 13q14.12 RNU6-69 RNA, U6 small nuclear 69 2011-08-08 2013-05-01 2013-05-01 2015-02-04 100873773 NR_046939 +HGNC:42560 RNU6-70P RNA, U6 small nuclear 70, pseudogene pseudogene pseudogene Approved 13q12.2 13q12.2 RNU6-70 RNA, U6 small nuclear 70 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106478988 ENSG00000252247 NG_044001 +HGNC:42561 RNU6-71P RNA, U6 small nuclear 71, pseudogene pseudogene pseudogene Approved 13q13.3 13q13.3 RNU6-71 RNA, U6 small nuclear 71 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873774 ENSG00000207203 NR_046940 +HGNC:42562 RNU6-72P RNA, U6 small nuclear 72, pseudogene pseudogene pseudogene Approved 13q31.1 13q31.1 RNU6-72 RNA, U6 small nuclear 72 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873775 ENSG00000207012 NR_046941 +HGNC:42563 RNU6-73P RNA, U6 small nuclear 73, pseudogene pseudogene pseudogene Approved 13q12.2 13q12.2 RNU6-73 RNA, U6 small nuclear 73 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106478989 ENSG00000207330 NG_044010 +HGNC:42564 RNU6-74P RNA, U6 small nuclear 74, pseudogene pseudogene pseudogene Approved 13q14.11 13q14.11 RNU6-74 RNA, U6 small nuclear 74 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106480752 ENSG00000206962 NG_043811 +HGNC:42565 RNU6-75P RNA, U6 small nuclear 75, pseudogene pseudogene pseudogene Approved 13q31.3 13q31.3 RNU6-75 RNA, U6 small nuclear 75 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873776 ENSG00000251753 NR_046942 +HGNC:42566 RNU6-76P RNA, U6 small nuclear 76, pseudogene pseudogene pseudogene Approved 13q11 13q11 "RNU6-76|RNU6-1002P" "RNA, U6 small nuclear 76|RNA, U6 small nuclear 1002, pseudogene" 2011-08-08 2013-05-01 2013-05-01 2016-02-10 100873777 ENSG00000206787 NR_046943 +HGNC:42567 RNU6-77P RNA, U6 small nuclear 77, pseudogene pseudogene pseudogene Approved 13q31.1 13q31.1 RNU6-77 RNA, U6 small nuclear 77 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106481792 ENSG00000222486 NG_043924 +HGNC:42568 RNU6-78P RNA, U6 small nuclear 78, pseudogene pseudogene pseudogene Approved 13q12.13 13q12.13 RNU6-78 RNA, U6 small nuclear 78 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873778 ENSG00000199767 NR_046944 +HGNC:42569 RNU6-79P RNA, U6 small nuclear 79, pseudogene pseudogene pseudogene Approved 13q22.1 13q22.1 RNU6-79 RNA, U6 small nuclear 79 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873779 ENSG00000199381 NR_046945 +HGNC:42570 RNU6-80P RNA, U6 small nuclear 80, pseudogene pseudogene pseudogene Approved 13q21.33 13q21.33 RNU6-80 RNA, U6 small nuclear 80 2011-08-08 2013-05-01 2013-05-01 2013-05-01 106478990 ENSG00000206922 NG_044017 +HGNC:42571 RNU6-81P RNA, U6 small nuclear 81, pseudogene pseudogene pseudogene Approved 13q21.31 13q21.31 RNU6-81 RNA, U6 small nuclear 81 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873780 ENSG00000202478 NR_046946 +HGNC:42572 RNU6-82P RNA, U6 small nuclear 82, pseudogene pseudogene pseudogene Approved 13q12.2 13q12.2 RNU6-82 RNA, U6 small nuclear 82 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873781 ENSG00000200840 NR_046947 +HGNC:42573 RNU6-83P RNA, U6 small nuclear 83, pseudogene pseudogene pseudogene Approved 13q32.3 13q32.3 RNU6-83 RNA, U6 small nuclear 83 2011-08-08 2013-05-01 2013-05-01 2013-05-01 100873782 ENSG00000207298 NR_046948 +HGNC:47047 RNU6-84P RNA, U6 small nuclear 84, pseudogene pseudogene pseudogene Approved 6q14.1 06q14.1 2013-05-01 2015-02-04 106479603 ENSG00000272445 NG_044836 +HGNC:47048 RNU6-85P RNA, U6 small nuclear 85, pseudogene pseudogene pseudogene Approved 7q34 07q34 2013-05-01 2015-02-05 106481203 ENSG00000271932 NG_045040 +HGNC:47049 RNU6-86P RNA, U6 small nuclear 86, pseudogene pseudogene pseudogene Approved 9q22.1 09q22.1 2013-05-01 2015-02-05 106479604 ENSG00000271923 NG_044844 +HGNC:47050 RNU6-87P RNA, U6 small nuclear 87, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 2013-05-01 2015-02-05 106481204 ENSG00000272028 NG_045411 +HGNC:47051 RNU6-88P RNA, U6 small nuclear 88, pseudogene pseudogene pseudogene Approved 10p14 10p14 2013-05-01 2015-02-05 106479605 ENSG00000272507 NG_044853 +HGNC:47052 RNU6-89P RNA, U6 small nuclear 89, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2015-02-05 106480550 ENSG00000272262 NG_044208 +HGNC:47053 RNU6-90P RNA, U6 small nuclear 90, pseudogene pseudogene pseudogene Approved 15q21.2 15q21.2 2013-05-01 2015-02-05 106481205 ENSG00000272337 NG_045416 +HGNC:47054 RNU6-91P RNA, U6 small nuclear 91, pseudogene pseudogene pseudogene Approved 14q32.2 14q32.2 2013-05-01 2015-02-05 106479606 ENSG00000272439 NG_044863 +HGNC:47055 RNU6-92P RNA, U6 small nuclear 92, pseudogene pseudogene pseudogene Approved 7q33 07q33 2013-05-01 2015-02-05 106479607 ENSG00000272393 NG_044869 +HGNC:47056 RNU6-93P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47057 RNU6-94P RNA, U6 small nuclear 94, pseudogene pseudogene pseudogene Approved 15q21.2 15q21.2 2013-05-01 2015-02-05 106481206 ENSG00000271819 NG_045418 +HGNC:47058 RNU6-95P RNA, U6 small nuclear 95, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 2013-05-01 2013-05-01 106479608 ENSG00000207428 NG_044876 +HGNC:47059 RNU6-96P RNA, U6 small nuclear 96, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 2013-05-01 2013-05-01 106481207 ENSG00000222364 NG_045044 +HGNC:47060 RNU6-97P RNA, U6 small nuclear 97, pseudogene pseudogene pseudogene Approved 17q25.1 17q25.1 2013-05-01 2013-05-01 106480551 ENSG00000200257 NG_045768 +HGNC:47061 RNU6-98P RNA, U6 small nuclear 98, pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 2013-05-01 2013-05-01 106479609 ENSG00000206900 NG_044884 +HGNC:47062 RNU6-99P RNA, U6 small nuclear 99, pseudogene pseudogene pseudogene Approved 11p12 11p12 2013-05-01 2013-05-01 106479610 ENSG00000201591 NG_044892 +HGNC:47063 RNU6-100P RNA, U6 small nuclear 100, pseudogene pseudogene pseudogene Approved 2p14 02p14 2013-05-01 2013-05-01 106481208 ENSG00000252414 NG_045427 +HGNC:47064 RNU6-101P RNA, U6 small nuclear 101, pseudogene pseudogene pseudogene Approved 12q23.2 12q23.2 2013-05-01 2013-05-01 106479611 ENSG00000222255 NG_046030 +HGNC:47065 RNU6-102P RNA, U6 small nuclear 102, pseudogene pseudogene pseudogene Approved 7q31.33 07q31.33 2013-05-01 2013-05-01 106481209 ENSG00000207214 NG_043385 +HGNC:47066 RNU6-103P RNA, U6 small nuclear 103, pseudogene pseudogene pseudogene Approved 16q21 16q21 2013-05-01 2013-05-01 106480552 ENSG00000200556 NG_045771 +HGNC:47067 RNU6-104P RNA, U6 small nuclear 104, pseudogene pseudogene pseudogene Approved 8p11.1 08p11.1 2013-05-01 2013-05-01 106479612 ENSG00000238509 NG_046032 +HGNC:47068 RNU6-105P RNA, U6 small nuclear 105, pseudogene pseudogene pseudogene Approved 2p13.2 02p13.2 2013-05-01 2013-05-01 106481210 ENSG00000200779 NG_045046 +HGNC:47069 RNU6-106P RNA, U6 small nuclear 106, pseudogene pseudogene pseudogene Approved 1q22 01q22 2013-05-01 2013-05-01 106479613 ENSG00000207134 NG_046036 +HGNC:47070 RNU6-107P RNA, U6 small nuclear 107, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 2013-05-01 2013-05-01 106479614 ENSG00000252452 NG_046041 +HGNC:47071 RNU6-108P RNA, U6 small nuclear 108, pseudogene pseudogene pseudogene Approved 3p14.3 03p14.3 2013-05-01 2013-05-01 106481875 ENSG00000202428 NG_045900 +HGNC:47072 RNU6-109P RNA, U6 small nuclear 109, pseudogene pseudogene pseudogene Approved Yq11.221 Yq11.221 2013-05-01 2013-05-01 106481211 ENSG00000252173 NG_043400 +HGNC:47073 RNU6-110P RNA, U6 small nuclear 110, pseudogene pseudogene pseudogene Approved 1p36.11 01p36.11 2013-05-01 2013-05-01 106479615 ENSG00000207237 NG_044929 +HGNC:47074 RNU6-111P RNA, U6 small nuclear 111, pseudogene pseudogene pseudogene Approved 2p13.1 02p13.1 2013-05-01 2013-05-01 106481212 ENSG00000252988 NG_043408 +HGNC:47075 RNU6-112P RNA, U6 small nuclear 112, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 2013-05-01 2013-05-01 107057647 ENSG00000200469 NG_046353 +HGNC:47076 RNU6-113P RNA, U6 small nuclear 113, pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 2013-05-01 2013-05-01 106479616 ENSG00000252462 NG_042902 +HGNC:47077 RNU6-114P RNA, U6 small nuclear 114, pseudogene pseudogene pseudogene Approved Xp22.33 Xp22.33 2013-05-01 2013-05-01 106481765 ENSG00000207435 NG_043728 +HGNC:47078 RNU6-115P RNA, U6 small nuclear 115, pseudogene pseudogene pseudogene Approved 20p12.1 20p12.1 2013-05-01 2013-05-01 106479617 ENSG00000201180 NG_045237 +HGNC:47079 RNU6-116P RNA, U6 small nuclear 116, pseudogene pseudogene pseudogene Approved 18q21.33 18q21.33 2013-05-01 2013-05-01 106480553 ENSG00000206769 NG_044233 +HGNC:47080 RNU6-117P RNA, U6 small nuclear 117, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106481213 ENSG00000202285 NG_045443 +HGNC:47081 RNU6-118P RNA, U6 small nuclear 118, pseudogene pseudogene pseudogene Approved 11q12.3 11q12.3 2013-05-01 2013-05-01 106479618 ENSG00000252361 NG_045243 +HGNC:47082 RNU6-119P RNA, U6 small nuclear 119, pseudogene pseudogene pseudogene Approved 4q26 04q26 2013-05-01 2013-05-01 106481214 ENSG00000201752 NG_043428 +HGNC:47083 RNU6-120P RNA, U6 small nuclear 120, pseudogene pseudogene pseudogene Approved 18q11.1 18q11.1 2013-05-01 2013-05-01 106479619 ENSG00000251886 NG_042922 +HGNC:47084 RNU6-121P RNA, U6 small nuclear 121, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106481215 ENSG00000222457 NG_043435 +HGNC:47085 RNU6-122P RNA, U6 small nuclear 122, pseudogene pseudogene pseudogene Approved Xq25 Xq25 2013-05-01 2013-05-01 106481876 ENSG00000252627 NG_045903 +HGNC:47086 RNU6-123P RNA, U6 small nuclear 123, pseudogene pseudogene pseudogene Approved 21q21.3 21q21.3 2013-05-01 2013-05-01 106479620 ENSG00000251972 NG_045251 +HGNC:47087 RNU6-124P RNA, U6 small nuclear 124, pseudogene pseudogene pseudogene Approved 9q31.3 09q31.3 2013-05-01 2013-05-01 106481216 ENSG00000212254 NG_045452 +HGNC:47088 RNU6-125P RNA, U6 small nuclear 125, pseudogene pseudogene pseudogene Approved 1p22.2 01p22.2 2013-05-01 2013-05-01 106479621 ENSG00000207234 NG_045254 +HGNC:47089 RNU6-126P RNA, U6 small nuclear 126, pseudogene pseudogene pseudogene Approved 11q14.1 11q14.1 2013-05-01 2013-05-01 106479622 ENSG00000252494 NG_045258 +HGNC:47090 RNU6-127P RNA, U6 small nuclear 127, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 2013-05-01 2013-05-01 106480554 ENSG00000212199 NG_045779 +HGNC:47091 RNU6-128P RNA, U6 small nuclear 128, pseudogene pseudogene pseudogene Approved 4q32.1 04q32.1 2013-05-01 2013-05-01 106481217 ENSG00000206703 NG_043451 +HGNC:47092 RNU6-129P RNA, U6 small nuclear 129, pseudogene pseudogene pseudogene Approved 10q23.1 10q23.1 2013-05-01 2013-05-01 106479623 ENSG00000212324 NG_042954 +HGNC:47093 RNU6-130P RNA, U6 small nuclear 130, pseudogene pseudogene pseudogene Approved 6q14.1 06q14.1 2013-05-01 2013-05-01 106481218 ENSG00000223044 NG_045456 +HGNC:47094 RNU6-131P RNA, U6 small nuclear 131, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 2013-05-01 2013-05-01 106479624 ENSG00000212446 NG_042963 +HGNC:47095 RNU6-132P RNA, U6 small nuclear 132, pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 2013-05-01 2013-05-01 106481219 ENSG00000206590 NG_045459 +HGNC:47096 RNU6-133P RNA, U6 small nuclear 133, pseudogene pseudogene pseudogene Approved Xp22.12 Xp22.12 2013-05-01 2013-05-01 106481877 ENSG00000206716 NG_044597 +HGNC:47097 RNU6-134P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47098 RNU6-135P RNA, U6 small nuclear 135, pseudogene pseudogene pseudogene Approved 1p36.12 01p36.12 2013-05-01 2013-05-01 106479625 ENSG00000252578 NG_042972 +HGNC:47099 RNU6-136P RNA, U6 small nuclear 136, pseudogene pseudogene pseudogene Approved 2q35 02q35 2013-05-01 2013-05-01 106479626 ENSG00000207393 NG_045271 +HGNC:47100 RNU6-137P RNA, U6 small nuclear 137, pseudogene pseudogene pseudogene Approved 2p21 02p21 2013-05-01 2013-05-01 106481220 ENSG00000200550 NG_045057 +HGNC:47101 RNU6-138P RNA, U6 small nuclear 138, pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 2013-05-01 2013-05-01 106479627 ENSG00000251761 NG_042988 +HGNC:47102 RNU6-139P RNA, U6 small nuclear 139, pseudogene pseudogene pseudogene Approved 3p14.2 03p14.2 2013-05-01 2013-05-01 106481977 ENSG00000252449 NG_043388 +HGNC:47103 RNU6-140P RNA, U6 small nuclear 140, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 2013-05-01 2013-05-01 106481221 ENSG00000207296 NG_043477 +HGNC:47104 RNU6-141P RNA, U6 small nuclear 141, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106480555 ENSG00000222431 NG_044249 +HGNC:47105 RNU6-142P RNA, U6 small nuclear 142, pseudogene pseudogene pseudogene Approved 18q21.33 18q21.33 2013-05-01 2013-05-01 106479628 ENSG00000206746 NG_042997 +HGNC:47106 RNU6-143P RNA, U6 small nuclear 143, pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 2013-05-01 2013-05-01 106479629 ENSG00000252751 NG_045280 +HGNC:47107 RNU6-144P RNA, U6 small nuclear 144, pseudogene pseudogene pseudogene Approved 8q24.23 08q24.23 2013-05-01 2013-05-01 106481222 ENSG00000206678 NG_043486 +HGNC:47108 RNU6-145P RNA, U6 small nuclear 145, pseudogene pseudogene pseudogene Approved 4q21.1 04q21.1 2013-05-01 2013-05-01 106479630 ENSG00000207307 NG_043015 +HGNC:47109 RNU6-146P RNA, U6 small nuclear 146, pseudogene pseudogene pseudogene Approved Xp22.33 Xp22.33 2013-05-01 2013-05-01 106865372 ENSG00000207332 NG_046318 +HGNC:47110 RNU6-147P RNA, U6 small nuclear 147, pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 2013-05-01 2013-05-01 106480556 ENSG00000206710 NG_044257 +HGNC:47111 RNU6-148P RNA, U6 small nuclear 148, pseudogene pseudogene pseudogene Approved 12q21.33 12q21.33 2013-05-01 2013-05-01 106479631 ENSG00000252823 NG_043025 +HGNC:47112 RNU6-149P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47113 RNU6-150P RNA, U6 small nuclear 150, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106479632 ENSG00000252046 NG_043032 +HGNC:47114 RNU6-151P RNA, U6 small nuclear 151, pseudogene pseudogene pseudogene Approved 1p13.2 01p13.2 2013-05-01 2013-05-01 106479633 ENSG00000201028 NG_043043 +HGNC:47115 RNU6-152P RNA, U6 small nuclear 152, pseudogene pseudogene pseudogene Approved 1q25.3 01q25.3 2013-05-01 2013-05-01 106481223 ENSG00000206764 NG_043492 +HGNC:47116 RNU6-153P RNA, U6 small nuclear 153, pseudogene pseudogene pseudogene Approved 6q27 06q27 2013-05-01 2013-05-01 106479634 ENSG00000201292 NG_043053 +HGNC:47117 RNU6-154P RNA, U6 small nuclear 154, pseudogene pseudogene pseudogene Approved Xq23 Xq23 2013-05-01 2013-05-01 106481878 ENSG00000207033 NG_044605 +HGNC:47118 RNU6-155P RNA, U6 small nuclear 155, pseudogene pseudogene pseudogene Approved 6q14.1 06q14.1 2013-05-01 2013-05-01 106481224 ENSG00000252156 NG_043500 +HGNC:47119 RNU6-156P RNA, U6 small nuclear 156, pseudogene pseudogene pseudogene Approved 9q13 09q13 2013-05-01 2015-02-04 106479635 ENSG00000278331 NG_043061 +HGNC:47120 RNU6-157P RNA, U6 small nuclear 157, pseudogene pseudogene pseudogene Approved 1q24.3 01q24.3 2013-05-01 2013-05-01 106479636 ENSG00000206684 NG_045302 +HGNC:47121 RNU6-158P RNA, U6 small nuclear 158, pseudogene pseudogene pseudogene Approved 4p11 04p11 2013-05-01 2013-05-01 106481225 ENSG00000252913 NG_043509 +HGNC:47122 RNU6-159P RNA, U6 small nuclear 159, pseudogene pseudogene pseudogene Approved 16p12.1 16p12.1 2013-05-01 2013-05-01 106480557 ENSG00000212382 NG_044265 +HGNC:47123 RNU6-160P RNA, U6 small nuclear 160, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106479637 ENSG00000207321 NG_043075 +HGNC:47124 RNU6-161P RNA, U6 small nuclear 161, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 2013-05-01 2013-05-01 106480387 ENSG00000199921 NG_042924 +HGNC:47125 RNU6-162P RNA, U6 small nuclear 162, pseudogene pseudogene pseudogene Approved 7q35 07q35 2013-05-01 2013-05-01 106481226 ENSG00000252037 NG_043518 +HGNC:47126 RNU6-163P RNA, U6 small nuclear 163, pseudogene pseudogene pseudogene Approved 10p15.1 10p15.1 2013-05-01 2013-05-01 106479638 ENSG00000207124 NG_043084 +HGNC:47127 RNU6-164P RNA, U6 small nuclear 164, pseudogene pseudogene pseudogene Approved 5q34 05q34 2013-05-01 2013-05-01 106479639 ENSG00000201474 NG_043093 +HGNC:47128 RNU6-165P RNA, U6 small nuclear 165, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106481227 ENSG00000252979 NG_045482 +HGNC:47129 RNU6-166P RNA, U6 small nuclear 166, pseudogene pseudogene pseudogene Approved 12q14.3 12q14.3 2013-05-01 2013-05-01 106481879 ENSG00000207099 NG_044615 +HGNC:47130 RNU6-167P RNA, U6 small nuclear 167, pseudogene pseudogene pseudogene Approved 18q12.1 18q12.1 2013-05-01 2013-05-01 106481228 ENSG00000207019 NG_045484 +HGNC:47131 RNU6-168P RNA, U6 small nuclear 168, pseudogene pseudogene pseudogene Approved 5q34 05q34 2013-05-01 2013-05-01 106479640 ENSG00000251998 NG_043101 +HGNC:47132 RNU6-169P RNA, U6 small nuclear 169, pseudogene pseudogene pseudogene Approved 2q32.3 02q32.3 2013-05-01 2013-05-01 106481229 ENSG00000202206 NG_043543 +HGNC:47133 RNU6-170P RNA, U6 small nuclear 170, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 2013-05-01 2013-05-01 106479641 ENSG00000199702 NG_043112 +HGNC:47134 RNU6-171P RNA, U6 small nuclear 171, pseudogene pseudogene pseudogene Approved 1q23.3 01q23.3 2013-05-01 2013-05-01 106481230 ENSG00000207082 NG_045490 +HGNC:47135 RNU6-172P RNA, U6 small nuclear 172, pseudogene pseudogene pseudogene Approved 12q23.2 12q23.2 2013-05-01 2013-05-01 106479642 ENSG00000222932 NG_045322 +HGNC:47136 RNU6-173P RNA, U6 small nuclear 173, pseudogene pseudogene pseudogene Approved 4q35.2 04q35.2 2013-05-01 2013-05-01 106479643 ENSG00000201085 NG_043127 +HGNC:47137 RNU6-174P RNA, U6 small nuclear 174, pseudogene pseudogene pseudogene Approved 12p13.32 12p13.32 2013-05-01 2013-05-01 106481231 ENSG00000222338 NG_045492 +HGNC:47138 RNU6-175P RNA, U6 small nuclear 175, pseudogene pseudogene pseudogene Approved 2q21.2 02q21.2 2013-05-01 2013-05-01 106480558 ENSG00000252705 NG_045150 +HGNC:47139 RNU6-176P RNA, U6 small nuclear 176, pseudogene pseudogene pseudogene Approved 1p35.3 01p35.3 2013-05-01 2013-05-01 106479644 ENSG00000253005 NG_043135 +HGNC:47140 RNU6-177P RNA, U6 small nuclear 177, pseudogene pseudogene pseudogene Approved 7q32.1 07q32.1 2013-05-01 2013-05-01 106481232 ENSG00000223189 NG_043569 +HGNC:47141 RNU6-178P RNA, U6 small nuclear 178, pseudogene pseudogene pseudogene Approved 8p21.1 08p21.1 2013-05-01 2013-05-01 106479645 ENSG00000207361 NG_043143 +HGNC:47142 RNU6-179P RNA, U6 small nuclear 179, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106479646 ENSG00000200220 NG_045337 +HGNC:47143 RNU6-180P RNA, U6 small nuclear 180, pseudogene pseudogene pseudogene Approved 1q42.13 01q42.13 2013-05-01 2013-05-01 106481233 ENSG00000252506 NG_043577 +HGNC:47144 RNU6-181P RNA, U6 small nuclear 181, pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 2013-05-01 2013-05-01 106480559 ENSG00000200095 NG_044284 +HGNC:47145 RNU6-182P RNA, U6 small nuclear 182, pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 2013-05-01 2013-05-01 106479647 ENSG00000252779 NG_045342 +HGNC:47146 RNU6-183P RNA, U6 small nuclear 183, pseudogene pseudogene pseudogene Approved 5q14.1 05q14.1 2013-05-01 2013-05-01 106481234 ENSG00000200331 NG_043587 +HGNC:47147 RNU6-184P RNA, U6 small nuclear 184, pseudogene pseudogene pseudogene Approved Yq11.221 Yq11.221 2013-05-01 2013-05-01 106479648 ENSG00000252323 NG_043167 +HGNC:47148 RNU6-185P RNA, U6 small nuclear 185, pseudogene pseudogene pseudogene Approved 15q25.3 15q25.3 2013-05-01 2013-05-01 106481235 ENSG00000207150 NG_043596 +HGNC:47150 RNU6-187P RNA, U6 small nuclear 187, pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 2013-05-01 2013-05-01 106481880 ENSG00000206866 NG_044622 +HGNC:47151 RNU6-188P RNA, U6 small nuclear 188, pseudogene pseudogene pseudogene Approved 15q15.1 15q15.1 2013-05-01 2013-05-01 106479649 ENSG00000201077 NG_045352 +HGNC:47152 RNU6-189P RNA, U6 small nuclear 189, pseudogene pseudogene pseudogene Approved 14q21.3 14q21.3 2013-05-01 2013-05-01 106479650 ENSG00000251929 NG_043182 +HGNC:47153 RNU6-190P RNA, U6 small nuclear 190, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106481236 ENSG00000206881 NG_043603 +HGNC:47154 RNU6-191P RNA, U6 small nuclear 191, pseudogene pseudogene pseudogene Approved 4q13.1 04q13.1 2013-05-01 2013-05-01 106479651 ENSG00000252104 NG_045356 +HGNC:47155 RNU6-192P RNA, U6 small nuclear 192, pseudogene pseudogene pseudogene Approved 20p12.1 20p12.1 2013-05-01 2013-05-01 106481237 ENSG00000212555 NG_043610 +HGNC:47156 RNU6-193P RNA, U6 small nuclear 193, pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 2013-05-01 2013-05-01 106480560 ENSG00000222909 NG_044293 +HGNC:47157 RNU6-194P RNA, U6 small nuclear 194, pseudogene pseudogene pseudogene Approved 6q22.31 06q22.31 2013-05-01 2013-05-01 106479652 ENSG00000200732 NG_043200 +HGNC:47158 RNU6-195P RNA, U6 small nuclear 195, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 2013-05-01 2013-05-01 106479653 ENSG00000223284 NG_045365 +HGNC:47159 RNU6-196P RNA, U6 small nuclear 196, pseudogene pseudogene pseudogene Approved 16p12.2 16p12.2 2013-05-01 2013-05-01 106481238 ENSG00000207042 NG_045510 +HGNC:47160 RNU6-197P RNA, U6 small nuclear 197, pseudogene pseudogene pseudogene Approved 4q12 04q12 2013-05-01 2013-05-01 106479654 ENSG00000252489 NG_043218 +HGNC:47161 RNU6-198P RNA, U6 small nuclear 198, pseudogene pseudogene pseudogene Approved 2p22.1 02p22.1 2013-05-01 2013-05-01 106481239 ENSG00000206985 NG_045078 +HGNC:47162 RNU6-199P RNA, U6 small nuclear 199, pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 2013-05-01 2013-05-01 106481881 ENSG00000199824 NG_044630 +HGNC:47163 RNU6-200P RNA, U6 small nuclear 200, pseudogene pseudogene pseudogene Approved 6q22.32 06q22.32 2013-05-01 2013-05-01 106479655 ENSG00000201613 NG_043229 +HGNC:47164 RNU6-201P RNA, U6 small nuclear 201, pseudogene pseudogene pseudogene Approved 22q12.3 22q12.3 2013-05-01 2013-05-01 106481240 ENSG00000252909 NG_045516 +HGNC:47165 RNU6-202P RNA, U6 small nuclear 202, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 2013-05-01 2013-05-01 106479656 ENSG00000251807 NG_045372 +HGNC:47166 RNU6-203P RNA, U6 small nuclear 203, pseudogene pseudogene pseudogene Approved Xq26.2 Xq26.2 2013-05-01 2013-05-01 106479657 ENSG00000206765 NG_043249 +HGNC:47167 RNU6-204P RNA, U6 small nuclear 204, pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 2013-05-01 2013-05-01 106481241 ENSG00000199335 NG_045519 +HGNC:47168 RNU6-205P RNA, U6 small nuclear 205, pseudogene pseudogene pseudogene Approved 4q25 04q25 2013-05-01 2013-05-01 106633815 ENSG00000212160 NG_042885 +HGNC:47169 RNU6-206P RNA, U6 small nuclear 206, pseudogene pseudogene pseudogene Approved 7q34 07q34 2013-05-01 2013-05-01 106481882 ENSG00000206843 NG_044638 +HGNC:47170 RNU6-207P RNA, U6 small nuclear 207, pseudogene pseudogene pseudogene Approved Xq22.3 Xq22.3 2013-05-01 2013-05-01 106481766 ENSG00000206864 NG_045554 +HGNC:47171 RNU6-208P RNA, U6 small nuclear 208, pseudogene pseudogene pseudogene Approved 16q22.2 16q22.2 2013-05-01 2013-05-01 106479658 ENSG00000199301 NG_045376 +HGNC:47172 RNU6-209P RNA, U6 small nuclear 209, pseudogene pseudogene pseudogene Approved 5q34 05q34 2013-05-01 2013-05-01 106481242 ENSG00000206845 NG_043644 +HGNC:47173 RNU6-210P RNA, U6 small nuclear 210, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 2013-05-01 2013-05-01 106479659 ENSG00000252752 NG_043269 +HGNC:47174 RNU6-211P RNA, U6 small nuclear 211, pseudogene pseudogene pseudogene Approved 5q14.1 05q14.1 2013-05-01 2013-05-01 106479660 ENSG00000206774 NG_043278 +HGNC:47175 RNU6-212P RNA, U6 small nuclear 212, pseudogene pseudogene pseudogene Approved 15q22.2 15q22.2 2013-05-01 2013-05-01 106481243 ENSG00000199512 NG_045527 +HGNC:47176 RNU6-213P RNA, U6 small nuclear 213, pseudogene pseudogene pseudogene Approved 16p13.11 16p13.11 RNU6-1033P RNA, U6 small nuclear 1033, pseudogene 2013-05-01 2016-02-10 106481244 ENSG00000206778 NG_045530 +HGNC:47177 RNU6-214P RNA, U6 small nuclear 214, pseudogene pseudogene pseudogene Approved 6q22.31 06q22.31 2013-05-01 2013-05-01 106479661 ENSG00000206857 NG_043288 +HGNC:47178 RNU6-215P RNA, U6 small nuclear 215, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 2013-05-01 2013-05-01 106481245 ENSG00000202039 NG_045081 +HGNC:47179 RNU6-216P RNA, U6 small nuclear 216, pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 2013-05-01 2013-05-01 106479662 ENSG00000200152 NG_043295 +HGNC:47180 RNU6-217P RNA, U6 small nuclear 217, pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 2013-05-01 2013-05-01 106481246 ENSG00000206891 NG_043674 +HGNC:47181 RNU6-218P RNA, U6 small nuclear 218, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 2013-05-01 2013-05-01 106479663 ENSG00000252929 NG_043302 +HGNC:47182 RNU6-219P RNA, U6 small nuclear 219, pseudogene pseudogene pseudogene Approved 18q21.32 18q21.32 2013-05-01 2013-05-01 106479664 ENSG00000201598 NG_043311 +HGNC:47183 RNU6-220P RNA, U6 small nuclear 220, pseudogene pseudogene pseudogene Approved 8q24.3 08q24.3 2013-05-01 2013-05-01 106481247 ENSG00000212221 NG_043680 +HGNC:47184 RNU6-221P RNA, U6 small nuclear 221, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 2013-05-01 2013-05-01 106480561 ENSG00000238493 NG_045152 +HGNC:47185 RNU6-222P RNA, U6 small nuclear 222, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106479665 ENSG00000199308 NG_043318 +HGNC:47186 RNU6-223P RNA, U6 small nuclear 223, pseudogene pseudogene pseudogene Approved 7q33 07q33 2013-05-01 2013-05-01 106481248 ENSG00000199700 NG_043691 +HGNC:47187 RNU6-224P RNA, U6 small nuclear 224, pseudogene pseudogene pseudogene Approved 4q28.3 04q28.3 2013-05-01 2013-05-01 106479666 ENSG00000206782 NG_043325 +HGNC:47188 RNU6-225P RNA, U6 small nuclear 225, pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 2013-05-01 2013-05-01 106479667 ENSG00000207343 NG_043336 +HGNC:47189 RNU6-226P RNA, U6 small nuclear 226, pseudogene pseudogene pseudogene Approved 5q35.2 05q35.2 2013-05-01 2013-05-01 106481249 ENSG00000200648 NG_043697 +HGNC:47190 RNU6-227P RNA, U6 small nuclear 227, pseudogene pseudogene pseudogene Approved 17q25.1 17q25.1 2013-05-01 2013-05-01 106481883 ENSG00000199735 NG_044644 +HGNC:47191 RNU6-228P RNA, U6 small nuclear 228, pseudogene pseudogene pseudogene Approved 20p12.1 20p12.1 2013-05-01 2013-05-01 106479668 ENSG00000199570 NG_045408 +HGNC:47192 RNU6-229P RNA, U6 small nuclear 229, pseudogene pseudogene pseudogene Approved 7q11.22 07q11.22 2013-05-01 2013-05-01 106481250 ENSG00000252423 NG_043704 +HGNC:47193 RNU6-230P RNA, U6 small nuclear 230, pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 2013-05-01 2013-05-01 106479669 ENSG00000199327 NG_045413 +HGNC:47194 RNU6-231P RNA, U6 small nuclear 231, pseudogene pseudogene pseudogene Approved 15q25.3 15q25.3 2013-05-01 2013-05-01 106481251 ENSG00000252931 NG_043709 +HGNC:47195 RNU6-232P RNA, U6 small nuclear 232, pseudogene pseudogene pseudogene Approved 3q21.2 03q21.2 2013-05-01 2013-05-01 106480388 ENSG00000252953 NG_042932 +HGNC:47196 RNU6-233P RNA, U6 small nuclear 233, pseudogene pseudogene pseudogene Approved 17q12 17q12 2013-05-01 2013-05-01 106480562 ENSG00000222777 NG_044309 +HGNC:47197 RNU6-234P RNA, U6 small nuclear 234, pseudogene pseudogene pseudogene Approved 2q37.3 02q37.3 2013-05-01 2013-05-01 106479670 ENSG00000202099 NG_045043 +HGNC:47198 RNU6-235P RNA, U6 small nuclear 235, pseudogene pseudogene pseudogene Approved 3p22.2 03p22.2 2013-05-01 2013-05-01 106479671 ENSG00000199514 NG_043369 +HGNC:47199 RNU6-236P RNA, U6 small nuclear 236, pseudogene pseudogene pseudogene Approved 5q31.2 05q31.2 2013-05-01 2013-05-01 106481252 ENSG00000200756 NG_043718 +HGNC:47200 RNU6-237P RNA, U6 small nuclear 237, pseudogene pseudogene pseudogene Approved 16q23.1 16q23.1 2013-05-01 2013-05-01 106479672 ENSG00000251794 NG_043373 +HGNC:47201 RNU6-238P RNA, U6 small nuclear 238, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 2013-05-01 2013-05-01 106481253 ENSG00000200183 NG_045552 +HGNC:47202 RNU6-239P RNA, U6 small nuclear 239, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106480563 ENSG00000212292 NG_044318 +HGNC:47203 RNU6-240P RNA, U6 small nuclear 240, pseudogene pseudogene pseudogene Approved 14q24.3 14q24.3 2013-05-01 2013-05-01 106479673 ENSG00000251907 NG_043380 +HGNC:47204 RNU6-241P RNA, U6 small nuclear 241, pseudogene pseudogene pseudogene Approved 7p12.3 07p12.3 2013-05-01 2013-05-01 106479674 ENSG00000212450 NG_043389 +HGNC:47205 RNU6-242P RNA, U6 small nuclear 242, pseudogene pseudogene pseudogene Approved 2p21 02p21 2013-05-01 2013-05-01 106481254 ENSG00000207087 NG_043735 +HGNC:47206 RNU6-243P RNA, U6 small nuclear 243, pseudogene pseudogene pseudogene Approved 3p22.3 03p22.3 2013-05-01 2013-05-01 106479675 ENSG00000212442 NG_045434 +HGNC:47207 RNU6-244P RNA, U6 small nuclear 244, pseudogene pseudogene pseudogene Approved 14q32.31 14q32.31 2013-05-01 2013-05-01 106866981 ENSG00000212330 NG_046328 +HGNC:47208 RNU6-245P RNA, U6 small nuclear 245, pseudogene pseudogene pseudogene Approved Xq12 Xq12 2013-05-01 2013-05-01 106481255 ENSG00000206747 NG_043741 +HGNC:47209 RNU6-246P RNA, U6 small nuclear 246, pseudogene pseudogene pseudogene Approved 9p22.3 09p22.3 2013-05-01 2013-05-01 106481884 ENSG00000207433 NG_045930 +HGNC:47210 RNU6-247P RNA, U6 small nuclear 247, pseudogene pseudogene pseudogene Approved 12q22 12q22 2013-05-01 2013-05-01 106479676 ENSG00000199506 NG_043405 +HGNC:47211 RNU6-248P RNA, U6 small nuclear 248, pseudogene pseudogene pseudogene Approved 6q14.1 06q14.1 2013-05-01 2013-05-01 106481256 ENSG00000222652 NG_043749 +HGNC:47212 RNU6-249P RNA, U6 small nuclear 249, pseudogene pseudogene pseudogene Approved 12q12 12q12 2013-05-01 2013-05-01 106479677 ENSG00000199886 NG_045442 +HGNC:47213 RNU6-250P RNA, U6 small nuclear 250, pseudogene pseudogene pseudogene Approved 6p21.2 06p21.2 2013-05-01 2013-05-01 106479678 ENSG00000252767 NG_043423 +HGNC:47214 RNU6-251P RNA, U6 small nuclear 251, pseudogene pseudogene pseudogene Approved 12p12.3 12p12.3 2013-05-01 2013-05-01 106481257 ENSG00000200105 NG_045565 +HGNC:47215 RNU6-252P RNA, U6 small nuclear 252, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 2013-05-01 2013-05-01 106480564 ENSG00000200102 NG_044327 +HGNC:47216 RNU6-253P RNA, U6 small nuclear 253, pseudogene pseudogene pseudogene Approved 6q22.1 06q22.1 2013-05-01 2013-05-01 106480697 ENSG00000207461 NG_043383 +HGNC:47217 RNU6-254P RNA, U6 small nuclear 254, pseudogene pseudogene pseudogene Approved 12p12.3 12p12.3 2013-05-01 2013-05-01 106479679 ENSG00000200247 NG_043431 +HGNC:47218 RNU6-255P RNA, U6 small nuclear 255, pseudogene pseudogene pseudogene Approved Yq11.222 Yq11.222 2013-05-01 2013-05-01 106481258 ENSG00000252766 NG_045570 +HGNC:47219 RNU6-256P RNA, U6 small nuclear 256, pseudogene pseudogene pseudogene Approved 11q24.1 11q24.1 2013-05-01 2013-05-01 106479680 ENSG00000252556 NG_043438 +HGNC:47220 RNU6-257P RNA, U6 small nuclear 257, pseudogene pseudogene pseudogene Approved 16q12.1 16q12.1 2013-05-01 2013-05-01 106479681 ENSG00000222170 NG_043446 +HGNC:47221 RNU6-258P RNA, U6 small nuclear 258, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2013-05-01 106481259 ENSG00000212186 NG_043771 +HGNC:47222 RNU6-259P RNA, U6 small nuclear 259, pseudogene pseudogene pseudogene Approved 2q14.3 02q14.3 2013-05-01 2013-05-01 106481260 ENSG00000206726 NG_043780 +HGNC:47223 RNU6-260P RNA, U6 small nuclear 260, pseudogene pseudogene pseudogene Approved 5q33.3 05q33.3 2013-05-01 2013-05-01 106479682 ENSG00000206819 NG_043456 +HGNC:47224 RNU6-261P RNA, U6 small nuclear 261, pseudogene pseudogene pseudogene Approved 6q14.1 06q14.1 2013-05-01 2013-05-01 106481885 ENSG00000238697 NG_044658 +HGNC:47225 RNU6-262P RNA, U6 small nuclear 262, pseudogene pseudogene pseudogene Approved 11q23.3 11q23.3 2013-05-01 2013-05-01 106481261 ENSG00000222249 NG_043789 +HGNC:47226 RNU6-263P RNA, U6 small nuclear 263, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106479683 ENSG00000200681 NG_043461 +HGNC:47227 RNU6-264P RNA, U6 small nuclear 264, pseudogene pseudogene pseudogene Approved 9p22.1 09p22.1 2013-05-01 2013-05-01 106481262 ENSG00000252943 NG_043796 +HGNC:47228 RNU6-265P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47229 RNU6-266P RNA, U6 small nuclear 266, pseudogene pseudogene pseudogene Approved Xp22.11 Xp22.11 2013-05-01 2013-05-01 106479684 ENSG00000201095 NG_043469 +HGNC:47230 RNU6-267P RNA, U6 small nuclear 267, pseudogene pseudogene pseudogene Approved 7q35 07q35 2013-05-01 2013-05-01 106480565 ENSG00000252523 NG_044335 +HGNC:47231 RNU6-268P RNA, U6 small nuclear 268, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 2013-05-01 2013-05-01 106479685 ENSG00000201044 NG_045059 +HGNC:47232 RNU6-269P RNA, U6 small nuclear 269, pseudogene pseudogene pseudogene Approved 16q21 16q21 2013-05-01 2013-05-01 106481263 ENSG00000212379 NG_043804 +HGNC:47233 RNU6-270P RNA, U6 small nuclear 270, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-05-01 2013-05-01 106479686 ENSG00000201001 NG_043481 +HGNC:47234 RNU6-271P RNA, U6 small nuclear 271, pseudogene pseudogene pseudogene Approved 10q24.1 10q24.1 2013-05-01 2013-05-01 106481264 ENSG00000200728 NG_043812 +HGNC:47235 RNU6-272P RNA, U6 small nuclear 272, pseudogene pseudogene pseudogene Approved 5q11.2 05q11.2 2013-05-01 2013-05-01 106479687 ENSG00000222960 NG_045469 +HGNC:47236 RNU6-273P RNA, U6 small nuclear 273, pseudogene pseudogene pseudogene Approved 14q13.3 14q13.3 2013-05-01 2013-05-01 106480566 ENSG00000252746 NG_044345 +HGNC:47237 RNU6-274P RNA, U6 small nuclear 274, pseudogene pseudogene pseudogene Approved 7q21.13 07q21.13 2013-05-01 2013-05-01 106479688 ENSG00000239075 NG_045473 +HGNC:47238 RNU6-275P RNA, U6 small nuclear 275, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 2013-05-01 2013-05-01 106481265 ENSG00000201780 NG_043821 +HGNC:47239 RNU6-276P RNA, U6 small nuclear 276, pseudogene pseudogene pseudogene Approved 4q12 04q12 2013-05-01 2013-05-01 106479689 ENSG00000251923 NG_043504 +HGNC:47240 RNU6-277P RNA, U6 small nuclear 277, pseudogene pseudogene pseudogene Approved 11q22.3 11q22.3 2013-05-01 2013-05-01 106481266 ENSG00000252081 NG_043830 +HGNC:47241 RNU6-278P RNA, U6 small nuclear 278, pseudogene pseudogene pseudogene Approved 20p12.1 20p12.1 2013-05-01 2013-05-01 106481767 ENSG00000212247 NG_045559 +HGNC:47242 RNU6-279P RNA, U6 small nuclear 279, pseudogene pseudogene pseudogene Approved 12q14.1 12q14.1 2013-05-01 2013-05-01 106479690 ENSG00000212599 NG_043513 +HGNC:47243 RNU6-280P RNA, U6 small nuclear 280, pseudogene pseudogene pseudogene Approved 6q12 06q12 RNU6-1221P RNA, U6 small nuclear 1221, pseudogene 2013-05-01 2015-10-14 106481886 ENSG00000201015 NG_044665 +HGNC:47244 RNU6-281P RNA, U6 small nuclear 281, pseudogene pseudogene pseudogene Approved 3p13 03p13 2013-05-01 2013-05-01 106481267 ENSG00000206939 NG_043838 +HGNC:47245 RNU6-282P RNA, U6 small nuclear 282, pseudogene pseudogene pseudogene Approved 2p16.3 02p16.3 2013-05-01 2013-05-01 106479691 ENSG00000202227 NG_045066 +HGNC:47246 RNU6-283P RNA, U6 small nuclear 283, pseudogene pseudogene pseudogene Approved 6p21.33 06p21.33 RNU6-683P RNA, U6 small nuclear 683, pseudogene 2013-05-01 2016-02-10 106479692 ENSG00000201658 NG_043530 +HGNC:47247 RNU6-284P RNA, U6 small nuclear 284, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 2013-05-01 2013-05-01 106481268 ENSG00000223037 NG_043845 +HGNC:47248 RNU6-285P RNA, U6 small nuclear 285, pseudogene pseudogene pseudogene Approved 8q21.11 08q21.11 2013-05-01 2013-05-01 106479693 ENSG00000222488 NG_043538 +HGNC:47249 RNU6-286P RNA, U6 small nuclear 286, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 2013-05-01 2013-05-01 106480567 ENSG00000207476 NG_045810 +HGNC:47250 RNU6-287P RNA, U6 small nuclear 287, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 2013-05-01 2013-05-01 106481269 ENSG00000252039 NG_045602 +HGNC:47251 RNU6-288P RNA, U6 small nuclear 288, pseudogene pseudogene pseudogene Approved 17q23.3 17q23.3 2013-05-01 2013-05-01 106479694 ENSG00000200560 NG_043547 +HGNC:47252 RNU6-289P RNA, U6 small nuclear 289, pseudogene pseudogene pseudogene Approved 4q25 04q25 2013-05-01 2013-05-01 106479695 ENSG00000200963 NG_043555 +HGNC:47253 RNU6-290P RNA, U6 small nuclear 290, pseudogene pseudogene pseudogene Approved 1q24.3 01q24.3 2013-05-01 2013-05-01 106481270 ENSG00000202082 NG_043856 +HGNC:47254 RNU6-291P RNA, U6 small nuclear 291, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 2013-05-01 2013-05-01 106479696 ENSG00000207451 NG_043565 +HGNC:47256 RNU6-293P RNA, U6 small nuclear 293, pseudogene pseudogene pseudogene Approved 6q25.3 06q25.3 2013-05-01 2013-05-01 106481271 ENSG00000223191 NG_045613 +HGNC:47257 RNU6-294P RNA, U6 small nuclear 294, pseudogene pseudogene pseudogene Approved 5q12.3 05q12.3 2013-05-01 2013-05-01 106479697 ENSG00000201869 NG_045495 +HGNC:47258 RNU6-295P RNA, U6 small nuclear 295, pseudogene pseudogene pseudogene Approved 8q11.21 08q11.21 2013-05-01 2013-05-01 106481272 ENSG00000252710 NG_043868 +HGNC:47259 RNU6-296P RNA, U6 small nuclear 296, pseudogene pseudogene pseudogene Approved 7q31.32 07q31.32 2013-05-01 2013-05-01 106479698 ENSG00000207338 NG_045498 +HGNC:47260 RNU6-297P RNA, U6 small nuclear 297, pseudogene pseudogene pseudogene Approved 14q21.3 14q21.3 2013-05-01 2013-05-01 106479699 ENSG00000207366 NG_043592 +HGNC:47261 RNU6-298P RNA, U6 small nuclear 298, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-05-01 2013-05-01 106481273 ENSG00000212190 NG_045616 +HGNC:47262 RNU6-299P RNA, U6 small nuclear 299, pseudogene pseudogene pseudogene Approved 5q11.2 05q11.2 2013-05-01 2013-05-01 106480389 ENSG00000253032 NG_042941 +HGNC:47263 RNU6-300P RNA, U6 small nuclear 300, pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 2013-05-01 2013-05-01 106479700 ENSG00000238616 NG_043600 +HGNC:47264 RNU6-301P RNA, U6 small nuclear 301, pseudogene pseudogene pseudogene Approved 14q22.1 14q22.1 2013-05-01 2013-05-01 106481274 ENSG00000207004 NG_045618 +HGNC:47265 RNU6-302P RNA, U6 small nuclear 302, pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 2013-05-01 2013-05-01 106479701 ENSG00000202119 NG_045507 +HGNC:47266 RNU6-303P RNA, U6 small nuclear 303, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2013-05-01 2013-05-01 106479702 ENSG00000252900 NG_043613 +HGNC:47267 RNU6-304P RNA, U6 small nuclear 304, pseudogene pseudogene pseudogene Approved 1p36.23 01p36.23 2013-05-01 2013-05-01 106481275 ENSG00000201725 NG_043891 +HGNC:47268 RNU6-305P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47269 RNU6-306P RNA, U6 small nuclear 306, pseudogene pseudogene pseudogene Approved 10p12.31 10p12.31 2013-05-01 2013-05-01 106479703 ENSG00000207347 NG_043621 +HGNC:47270 RNU6-307P RNA, U6 small nuclear 307, pseudogene pseudogene pseudogene Approved 1q25.1 01q25.1 2013-05-01 2013-05-01 106481276 ENSG00000252552 NG_043900 +HGNC:47271 RNU6-308P RNA, U6 small nuclear 308, pseudogene pseudogene pseudogene Approved 5q15 05q15 2013-05-01 2013-05-01 106480568 ENSG00000212259 NG_044364 +HGNC:47272 RNU6-309P RNA, U6 small nuclear 309, pseudogene pseudogene pseudogene Approved Xq22.3 Xq22.3 2013-05-01 2013-05-01 106479704 ENSG00000201443 NG_043627 +HGNC:47273 RNU6-310P RNA, U6 small nuclear 310, pseudogene pseudogene pseudogene Approved 4q12 04q12 2013-05-01 2013-05-01 106481277 ENSG00000207385 NG_045625 +HGNC:47274 RNU6-311P RNA, U6 small nuclear 311, pseudogene pseudogene pseudogene Approved 11q14.1 11q14.1 2013-05-01 2013-05-01 106479705 ENSG00000252033 NG_043635 +HGNC:47275 RNU6-312P RNA, U6 small nuclear 312, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 2013-05-01 2013-05-01 106479706 ENSG00000201499 NG_045523 +HGNC:47276 RNU6-313P RNA, U6 small nuclear 313, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 2013-05-01 2013-05-01 106480569 ENSG00000252126 NG_045819 +HGNC:47277 RNU6-314P RNA, U6 small nuclear 314, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2013-05-01 106481278 ENSG00000252383 NG_043913 +HGNC:47278 RNU6-315P RNA, U6 small nuclear 315, pseudogene pseudogene pseudogene Approved 3q26.2 03q26.2 2013-05-01 2013-05-01 106479707 ENSG00000199536 NG_043649 +HGNC:47279 RNU6-316P RNA, U6 small nuclear 316, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 2013-05-01 2013-05-01 106481279 ENSG00000212329 NG_045633 +HGNC:47280 RNU6-317P RNA, U6 small nuclear 317, pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 2013-05-01 2013-05-01 106479708 ENSG00000206758 NG_043658 +HGNC:47281 RNU6-318P RNA, U6 small nuclear 318, pseudogene pseudogene pseudogene Approved 12p11.21 12p11.21 RNU6-1295P RNA, U6 small nuclear 1295, pseudogene 2013-05-01 2015-10-14 106481589 ENSG00000207477 NG_044337 +HGNC:47282 RNU6-319P RNA, U6 small nuclear 319, pseudogene pseudogene pseudogene Approved 9p22.3 09p22.3 2013-05-01 2013-05-01 106481280 ENSG00000251834 NG_043922 +HGNC:47283 RNU6-320P RNA, U6 small nuclear 320, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2013-05-01 2013-05-01 106480570 ENSG00000252320 NG_044376 +HGNC:47284 RNU6-321P RNA, U6 small nuclear 321, pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 2013-05-01 2013-05-01 106479709 ENSG00000222844 NG_045532 +HGNC:47285 RNU6-322P RNA, U6 small nuclear 322, pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 2013-05-01 2013-05-01 107105253 ENSG00000251819 NG_046571 +HGNC:47286 RNU6-323P RNA, U6 small nuclear 323, pseudogene pseudogene pseudogene Approved 8p11.23 08p11.23 2013-05-01 2015-02-04 106481281 ENSG00000253739 NG_045642 +HGNC:47287 RNU6-324P RNA, U6 small nuclear 324, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 2013-05-01 2013-05-01 106479710 ENSG00000200827 NG_045535 +HGNC:47288 RNU6-325P RNA, U6 small nuclear 325, pseudogene pseudogene pseudogene Approved 10q23.1 10q23.1 2013-05-01 2013-05-01 106480390 ENSG00000223064 NG_042949 +HGNC:47289 RNU6-326P RNA, U6 small nuclear 326, pseudogene pseudogene pseudogene Approved 7p12.3 07p12.3 2013-05-01 2013-05-01 106481282 ENSG00000202350 NG_043936 +HGNC:47290 RNU6-327P RNA, U6 small nuclear 327, pseudogene pseudogene pseudogene Approved 12q24.33 12q24.33 2013-05-01 2013-05-01 106481887 ENSG00000252079 NG_044670 +HGNC:47291 RNU6-328P RNA, U6 small nuclear 328, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 2013-05-01 2013-05-01 106479711 ENSG00000212189 NG_043677 +HGNC:47292 RNU6-329P RNA, U6 small nuclear 329, pseudogene pseudogene pseudogene Approved 9q31.1 09q31.1 2013-05-01 2013-05-01 106479712 ENSG00000238882 NG_043686 +HGNC:47293 RNU6-330P RNA, U6 small nuclear 330, pseudogene pseudogene pseudogene Approved Xq13.2 Xq13.2 2013-05-01 2013-05-01 106481283 ENSG00000199885 NG_043944 +HGNC:47294 RNU6-331P RNA, U6 small nuclear 331, pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 2013-05-01 2013-05-01 106479713 ENSG00000207455 NG_043695 +HGNC:47295 RNU6-332P RNA, U6 small nuclear 332, pseudogene pseudogene pseudogene Approved Xq21.32 Xq21.32 2013-05-01 2013-05-01 106481284 ENSG00000212495 NG_043953 +HGNC:47296 RNU6-333P RNA, U6 small nuclear 333, pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 2013-05-01 2013-05-01 106480571 ENSG00000238669 NG_044386 +HGNC:47297 RNU6-334P RNA, U6 small nuclear 334, pseudogene pseudogene pseudogene Approved 5q21.2 05q21.2 2013-05-01 2013-05-01 106479714 ENSG00000252881 NG_043700 +HGNC:47298 RNU6-335P RNA, U6 small nuclear 335, pseudogene pseudogene pseudogene Approved 4q35.1 04q35.1 2013-05-01 2013-05-01 106479715 ENSG00000201433 NG_043707 +HGNC:47299 RNU6-336P RNA, U6 small nuclear 336, pseudogene pseudogene pseudogene Approved 8p21.3 08p21.3 2013-05-01 2013-05-01 106481285 ENSG00000201761 NG_043958 +HGNC:47300 RNU6-337P RNA, U6 small nuclear 337, pseudogene pseudogene pseudogene Approved 7q21.11 07q21.11 2013-05-01 2013-05-01 106479716 ENSG00000212545 NG_045090 +HGNC:47301 RNU6-338P RNA, U6 small nuclear 338, pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 2013-05-01 2013-05-01 106481286 ENSG00000206615 NG_043966 +HGNC:47302 RNU6-339P RNA, U6 small nuclear 339, pseudogene pseudogene pseudogene Approved 15q25.3 15q25.3 2013-05-01 2013-05-01 106481888 ENSG00000207037 NG_044678 +HGNC:47303 RNU6-340P RNA, U6 small nuclear 340, pseudogene pseudogene pseudogene Approved 18p11.32 18p11.32 2013-05-01 2013-05-01 106479717 ENSG00000200875 NG_043723 +HGNC:47304 RNU6-341P RNA, U6 small nuclear 341, pseudogene pseudogene pseudogene Approved 14q23.1 14q23.1 2013-05-01 2013-05-01 106481287 ENSG00000252782 NG_045663 +HGNC:47305 RNU6-342P RNA, U6 small nuclear 342, pseudogene pseudogene pseudogene Approved 3p24.1 03p24.1 2013-05-01 2013-05-01 106479718 ENSG00000207251 NG_045553 +HGNC:47306 RNU6-343P RNA, U6 small nuclear 343, pseudogene pseudogene pseudogene Approved 12q13.3 12q13.3 2013-05-01 2013-05-01 106479719 ENSG00000201579 NG_045556 +HGNC:47307 RNU6-344P RNA, U6 small nuclear 344, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106480572 ENSG00000252444 NG_044395 +HGNC:47308 RNU6-345P RNA, U6 small nuclear 345, pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 2013-05-01 2013-05-01 106481288 ENSG00000252810 NG_043979 +HGNC:47309 RNU6-346P RNA, U6 small nuclear 346, pseudogene pseudogene pseudogene Approved 18q23 18q23 2013-05-01 2013-05-01 106481768 ENSG00000252097 NG_045563 +HGNC:47310 RNU6-347P RNA, U6 small nuclear 347, pseudogene pseudogene pseudogene Approved 20q13.2 20q13.2 2013-05-01 2013-05-01 106479720 ENSG00000252467 NG_043745 +HGNC:47311 RNU6-348P RNA, U6 small nuclear 348, pseudogene pseudogene pseudogene Approved 3q26.31 03q26.31 2013-05-01 2013-05-01 106481289 ENSG00000207114 NG_043988 +HGNC:47312 RNU6-349P RNA, U6 small nuclear 349, pseudogene pseudogene pseudogene Approved 18p11.31 18p11.31 2013-05-01 2013-05-01 106479721 ENSG00000199272 NG_043754 +HGNC:47313 RNU6-350P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47314 RNU6-351P RNA, U6 small nuclear 351, pseudogene pseudogene pseudogene Approved 4q24 04q24 2013-05-01 2013-05-01 106479722 ENSG00000251906 NG_045568 +HGNC:47315 RNU6-352P RNA, U6 small nuclear 352, pseudogene pseudogene pseudogene Approved 1p21.1 01p21.1 2013-05-01 2013-05-01 106480573 ENSG00000252717 NG_044403 +HGNC:47316 RNU6-353P RNA, U6 small nuclear 353, pseudogene pseudogene pseudogene Approved 15q15.3 15q15.3 2013-05-01 2013-05-01 106479723 ENSG00000201136 NG_045572 +HGNC:47317 RNU6-354P RNA, U6 small nuclear 354, pseudogene pseudogene pseudogene Approved 15q15.3 15q15.3 2013-05-01 2013-05-01 106481290 ENSG00000206589 NG_043991 +HGNC:47318 RNU6-355P RNA, U6 small nuclear 355, pseudogene pseudogene pseudogene Approved 16q24.3 16q24.3 2013-05-01 2013-05-01 106481889 ENSG00000222359 NG_045950 +HGNC:47319 RNU6-356P RNA, U6 small nuclear 356, pseudogene pseudogene pseudogene Approved 8p11.21 08p11.21 2013-05-01 2013-05-01 106479724 ENSG00000206867 NG_043775 +HGNC:47320 RNU6-357P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47321 RNU6-358P RNA, U6 small nuclear 358, pseudogene pseudogene pseudogene Approved 5p13.3 05p13.3 2013-05-01 2013-05-01 106481291 ENSG00000252373 NG_043999 +HGNC:47322 RNU6-359P RNA, U6 small nuclear 359, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 2013-05-01 2013-05-01 106479725 ENSG00000202336 NG_043784 +HGNC:47323 RNU6-360P RNA, U6 small nuclear 360, pseudogene pseudogene pseudogene Approved 2q33.3 02q33.3 2013-05-01 2013-05-01 106479726 ENSG00000212246 NG_045578 +HGNC:47324 RNU6-361P RNA, U6 small nuclear 361, pseudogene pseudogene pseudogene Approved 12q24.11 12q24.11 2013-05-01 2013-05-01 106480574 ENSG00000201324 NG_045834 +HGNC:47325 RNU6-362P RNA, U6 small nuclear 362, pseudogene pseudogene pseudogene Approved 17q25.1 17q25.1 2013-05-01 2013-05-01 106481292 ENSG00000252545 NG_044008 +HGNC:47326 RNU6-363P RNA, U6 small nuclear 363, pseudogene pseudogene pseudogene Approved 5p13.3 05p13.3 2013-05-01 2013-05-01 106479727 ENSG00000199765 NG_043799 +HGNC:47327 RNU6-364P RNA, U6 small nuclear 364, pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 2013-05-01 2013-05-01 106481293 ENSG00000207115 NG_045121 +HGNC:47328 RNU6-365P RNA, U6 small nuclear 365, pseudogene pseudogene pseudogene Approved 11p12 11p12 2013-05-01 2013-05-01 106479728 ENSG00000252922 NG_043808 +HGNC:47329 RNU6-366P RNA, U6 small nuclear 366, pseudogene pseudogene pseudogene Approved 14q32.12 14q32.12 2013-05-01 2013-05-01 106481294 ENSG00000201097 NG_044025 +HGNC:47330 RNU6-367P RNA, U6 small nuclear 367, pseudogene pseudogene pseudogene Approved 3p21.32 03p21.32 2013-05-01 2013-05-01 106481890 ENSG00000252980 NG_044697 +HGNC:47331 RNU6-368P RNA, U6 small nuclear 368, pseudogene pseudogene pseudogene Approved 9q13 09q13 2013-05-01 2015-02-04 106479729 ENSG00000278551 NG_045586 +HGNC:47332 RNU6-369P RNA, U6 small nuclear 369, pseudogene pseudogene pseudogene Approved 1p34.1 01p34.1 2013-05-01 2013-05-01 106479730 ENSG00000199385 NG_043825 +HGNC:47333 RNU6-370P RNA, U6 small nuclear 370, pseudogene pseudogene pseudogene Approved 2p23.3 02p23.3 2013-05-01 2013-05-01 106481295 ENSG00000222940 NG_045123 +HGNC:47334 RNU6-371P RNA, U6 small nuclear 371, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-01 2013-05-01 106479731 ENSG00000201153 NG_045593 +HGNC:47335 RNU6-372P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47336 RNU6-373P RNA, U6 small nuclear 373, pseudogene pseudogene pseudogene Approved 5q23.1 05q23.1 2013-05-01 2013-05-01 106480391 ENSG00000223179 NG_045263 +HGNC:47337 RNU6-374P RNA, U6 small nuclear 374, pseudogene pseudogene pseudogene Approved 5p14.1 05p14.1 2013-05-01 2013-05-01 106481296 ENSG00000201016 NG_044041 +HGNC:47338 RNU6-375P RNA, U6 small nuclear 375, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 2013-05-01 2013-05-01 106480575 ENSG00000252859 NG_045836 +HGNC:47339 RNU6-376P RNA, U6 small nuclear 376, pseudogene pseudogene pseudogene Approved 11q23.3 11q23.3 2013-05-01 2013-05-01 106479732 ENSG00000207462 NG_043841 +HGNC:47340 RNU6-377P RNA, U6 small nuclear 377, pseudogene pseudogene pseudogene Approved 3p25.2 03p25.2 2013-05-01 2013-05-01 106479733 ENSG00000251774 NG_045599 +HGNC:47341 RNU6-378P RNA, U6 small nuclear 378, pseudogene pseudogene pseudogene Approved 5p13.3 05p13.3 2013-05-01 2013-05-01 106481297 ENSG00000207052 NG_044050 +HGNC:47342 RNU6-379P RNA, U6 small nuclear 379, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 2013-05-01 2013-05-01 106479734 ENSG00000200683 NG_045604 +HGNC:47343 RNU6-380P RNA, U6 small nuclear 380, pseudogene pseudogene pseudogene Approved 15q25.1 15q25.1 2013-05-01 2013-05-01 106481298 ENSG00000222139 NG_044058 +HGNC:47344 RNU6-381P RNA, U6 small nuclear 381, pseudogene pseudogene pseudogene Approved 5p12 05p12 2013-05-01 2013-05-01 106480576 ENSG00000212561 NG_044429 +HGNC:47345 RNU6-382P RNA, U6 small nuclear 382, pseudogene pseudogene pseudogene Approved Xq27.3 Xq27.3 2013-05-01 2013-05-01 106479735 ENSG00000202051 NG_043858 +HGNC:47346 RNU6-383P RNA, U6 small nuclear 383, pseudogene pseudogene pseudogene Approved Xq28 Xq28 2013-05-01 2013-05-01 106479736 ENSG00000222796 NG_043864 +HGNC:47347 RNU6-384P RNA, U6 small nuclear 384, pseudogene pseudogene pseudogene Approved 20q11.21 20q11.21 2013-05-01 2013-05-01 106481299 ENSG00000201770 NG_044068 +HGNC:47348 RNU6-385P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47349 RNU6-386P RNA, U6 small nuclear 386, pseudogene pseudogene pseudogene Approved 3p12.3 03p12.3 2013-05-01 2013-05-01 106481300 ENSG00000199520 NG_045699 +HGNC:47350 RNU6-387P RNA, U6 small nuclear 387, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-01 2013-05-01 106481891 ENSG00000223263 NG_044707 +HGNC:47351 RNU6-388P RNA, U6 small nuclear 388, pseudogene pseudogene pseudogene Approved 7p14.3 07p14.3 2013-05-01 2013-05-01 106479737 ENSG00000252821 NG_043871 +HGNC:47352 RNU6-389P RNA, U6 small nuclear 389, pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 2013-05-01 2013-05-01 106481301 ENSG00000252857 NG_045131 +HGNC:47353 RNU6-390P RNA, U6 small nuclear 390, pseudogene pseudogene pseudogene Approved 5q33.3 05q33.3 2013-05-01 2013-05-01 106479738 ENSG00000252068 NG_043879 +HGNC:47354 RNU6-391P RNA, U6 small nuclear 391, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106479739 ENSG00000202050 NG_043886 +HGNC:47355 RNU6-392P RNA, U6 small nuclear 392, pseudogene pseudogene pseudogene Approved 7q22.3 07q22.3 2013-05-01 2013-05-01 106480577 ENSG00000201796 NG_045162 +HGNC:47356 RNU6-393P RNA, U6 small nuclear 393, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 2013-05-01 2013-05-01 106481302 ENSG00000207204 NG_044093 +HGNC:47357 RNU6-394P RNA, U6 small nuclear 394, pseudogene pseudogene pseudogene Approved Xq12 Xq12 2013-05-01 2013-05-01 106480698 ENSG00000222667 NG_043393 +HGNC:47358 RNU6-395P RNA, U6 small nuclear 395, pseudogene pseudogene pseudogene Approved 2q14.3 02q14.3 2013-05-01 2013-05-01 106479740 ENSG00000202532 NG_045106 +HGNC:47359 RNU6-396P RNA, U6 small nuclear 396, pseudogene pseudogene pseudogene Approved 21q22.3 21q22.3 2013-05-01 2013-05-01 106481303 ENSG00000202239 NG_045706 +HGNC:47360 RNU6-397P RNA, U6 small nuclear 397, pseudogene pseudogene pseudogene Approved 8p22 08p22 2013-05-01 2013-05-01 106479741 ENSG00000252035 NG_045622 +HGNC:47361 RNU6-398P RNA, U6 small nuclear 398, pseudogene pseudogene pseudogene Approved 14q23.1 14q23.1 2013-05-01 2013-05-01 106479742 ENSG00000206870 NG_043910 +HGNC:47362 RNU6-399P RNA, U6 small nuclear 399, pseudogene pseudogene pseudogene Approved 12q14.1 12q14.1 2013-05-01 2013-05-01 106481892 ENSG00000202034 NG_044715 +HGNC:47363 RNU6-400P RNA, U6 small nuclear 400, pseudogene pseudogene pseudogene Approved 12p11.1 12p11.1 2013-05-01 2013-05-01 106481304 ENSG00000212475 NG_044112 +HGNC:47364 RNU6-401P RNA, U6 small nuclear 401, pseudogene pseudogene pseudogene Approved 15q25.2 15q25.2 2013-05-01 2013-05-01 106479743 ENSG00000212374 NG_045631 +HGNC:47365 RNU6-402P RNA, U6 small nuclear 402, pseudogene pseudogene pseudogene Approved 5q21.1 05q21.1 2013-05-01 2013-05-01 106481305 ENSG00000222610 NG_044119 +HGNC:47366 RNU6-403P RNA, U6 small nuclear 403, pseudogene pseudogene pseudogene Approved 1q41 01q41 2013-05-01 2013-05-01 106480578 ENSG00000200033 NG_045845 +HGNC:47367 RNU6-404P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47368 RNU6-405P RNA, U6 small nuclear 405, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2013-05-01 106479744 ENSG00000252446 NG_045636 +HGNC:47369 RNU6-406P RNA, U6 small nuclear 406, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 2013-05-01 2013-05-01 106481306 ENSG00000252279 NG_044125 +HGNC:47370 RNU6-407P RNA, U6 small nuclear 407, pseudogene pseudogene pseudogene Approved 20q11.22 20q11.22 2013-05-01 2013-05-01 106479745 ENSG00000202150 NG_045638 +HGNC:47371 RNU6-408P RNA, U6 small nuclear 408, pseudogene pseudogene pseudogene Approved 18q12.1 18q12.1 2013-05-01 2013-05-01 106479746 ENSG00000251719 NG_043933 +HGNC:47372 RNU6-409P RNA, U6 small nuclear 409, pseudogene pseudogene pseudogene Approved 22q13.33 22q13.33 2013-05-01 2013-05-01 106481307 ENSG00000206841 NG_044133 +HGNC:47373 RNU6-410P RNA, U6 small nuclear 410, pseudogene pseudogene pseudogene Approved 4q12 04q12 2013-05-01 2013-05-01 106481893 ENSG00000252815 NG_044724 +HGNC:47374 RNU6-411P RNA, U6 small nuclear 411, pseudogene pseudogene pseudogene Approved 6q13 06q13 2013-05-01 2013-05-01 106479747 ENSG00000207180 NG_043940 +HGNC:47375 RNU6-412P RNA, U6 small nuclear 412, pseudogene pseudogene pseudogene Approved 4p12 04p12 2013-05-01 2013-05-01 106481308 ENSG00000252243 NG_044140 +HGNC:47376 RNU6-413P RNA, U6 small nuclear 413, pseudogene pseudogene pseudogene Approved 10p12.2 10p12.2 2013-05-01 2013-05-01 106479748 ENSG00000206842 NG_043948 +HGNC:47377 RNU6-414P RNA, U6 small nuclear 414, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-01 2013-05-01 106479749 ENSG00000200575 NG_045653 +HGNC:47378 RNU6-415P RNA, U6 small nuclear 415, pseudogene pseudogene pseudogene Approved 15q25.1 15q25.1 2013-05-01 2013-05-01 106481309 ENSG00000252061 NG_044147 +HGNC:47379 RNU6-416P RNA, U6 small nuclear 416, pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 2013-05-01 2013-05-01 106480579 ENSG00000252074 NG_044451 +HGNC:47380 RNU6-417P RNA, U6 small nuclear 417, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 2013-05-01 2013-05-01 106479750 ENSG00000207443 NG_043961 +HGNC:47381 RNU6-418P RNA, U6 small nuclear 418, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2013-05-01 106481310 ENSG00000206762 NG_045735 +HGNC:47382 RNU6-419P RNA, U6 small nuclear 419, pseudogene pseudogene pseudogene Approved 14q24.2 14q24.2 2013-05-01 2013-05-01 106479751 ENSG00000252839 NG_043968 +HGNC:47383 RNU6-420P RNA, U6 small nuclear 420, pseudogene pseudogene pseudogene Approved 4p15.2 04p15.2 2013-05-01 2013-05-01 106481769 ENSG00000239001 NG_043759 +HGNC:47384 RNU6-421P RNA, U6 small nuclear 421, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 2013-05-01 2013-05-01 106481311 ENSG00000201341 NG_044160 +HGNC:47385 RNU6-422P RNA, U6 small nuclear 422, pseudogene pseudogene pseudogene Approved 10q24.31 10q24.31 2013-05-01 2013-05-01 106480580 ENSG00000207362 NG_044458 +HGNC:47386 RNU6-423P RNA, U6 small nuclear 423, pseudogene pseudogene pseudogene Approved 1q32.3 01q32.3 2013-05-01 2013-05-01 106479752 ENSG00000207491 NG_043976 +HGNC:47387 RNU6-424P RNA, U6 small nuclear 424, pseudogene pseudogene pseudogene Approved 1p35.3 01p35.3 2013-05-01 2013-05-01 106479753 ENSG00000207095 NG_043984 +HGNC:47388 RNU6-425P RNA, U6 small nuclear 425, pseudogene pseudogene pseudogene Approved 3q23 03q23 2013-05-01 2013-05-01 106481312 ENSG00000206604 NG_044168 +HGNC:47389 RNU6-426P RNA, U6 small nuclear 426, pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 2013-05-01 2013-05-01 106479754 ENSG00000252273 NG_043990 +HGNC:47390 RNU6-427P RNA, U6 small nuclear 427, pseudogene pseudogene pseudogene Approved 6q24.1 06q24.1 2013-05-01 2013-05-01 106481313 ENSG00000206856 NG_044177 +HGNC:47391 RNU6-428P RNA, U6 small nuclear 428, pseudogene pseudogene pseudogene Approved 3q24 03q24 2013-05-01 2013-05-01 106481894 ENSG00000199812 NG_044734 +HGNC:47392 RNU6-429P RNA, U6 small nuclear 429, pseudogene pseudogene pseudogene Approved 5p15.2 05p15.2 2013-05-01 2013-05-01 106479755 ENSG00000207312 NG_043995 +HGNC:47393 RNU6-430P RNA, U6 small nuclear 430, pseudogene pseudogene pseudogene Approved 16q24.3 16q24.3 2013-05-01 2013-05-01 106479756 ENSG00000252887 NG_044004 +HGNC:47394 RNU6-431P RNA, U6 small nuclear 431, pseudogene pseudogene pseudogene Approved 4q25 04q25 2013-05-01 2013-05-01 106481314 ENSG00000206601 NG_045748 +HGNC:47395 RNU6-432P RNA, U6 small nuclear 432, pseudogene pseudogene pseudogene Approved 9q31.3 09q31.3 2013-05-01 2013-05-01 106479757 ENSG00000206923 NG_044013 +HGNC:47396 RNU6-433P RNA, U6 small nuclear 433, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 2013-05-01 2013-05-01 106481315 ENSG00000200086 NG_045142 +HGNC:47397 RNU6-434P RNA, U6 small nuclear 434, pseudogene pseudogene pseudogene Approved Xp11.22 Xp11.22 2013-05-01 2013-05-01 106480581 ENSG00000207104 NG_044463 +HGNC:47398 RNU6-435P RNA, U6 small nuclear 435, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 2013-05-01 2013-05-01 106479758 ENSG00000206766 NG_044020 +HGNC:47399 RNU6-436P RNA, U6 small nuclear 436, pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 2013-05-01 2013-05-01 106481316 ENSG00000251980 NG_045145 +HGNC:47400 RNU6-437P RNA, U6 small nuclear 437, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106479759 ENSG00000238420 NG_044029 +HGNC:47401 RNU6-438P RNA, U6 small nuclear 438, pseudogene pseudogene pseudogene Approved 7p14.3 07p14.3 2013-05-01 2013-05-01 106479760 ENSG00000202431 NG_044037 +HGNC:47402 RNU6-439P RNA, U6 small nuclear 439, pseudogene pseudogene pseudogene Approved 2p16.3 02p16.3 2013-05-01 2013-05-01 106481317 ENSG00000206915 NG_044202 +HGNC:47403 RNU6-440P RNA, U6 small nuclear 440, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 2013-05-01 2013-05-01 106481895 ENSG00000212184 NG_045193 +HGNC:47404 RNU6-441P RNA, U6 small nuclear 441, pseudogene pseudogene pseudogene Approved 10q23.1 10q23.1 2013-05-01 2013-05-01 106480392 ENSG00000207275 NG_045265 +HGNC:47405 RNU6-442P RNA, U6 small nuclear 442, pseudogene pseudogene pseudogene Approved 8q24.13 08q24.13 2013-05-01 2013-05-01 106479761 ENSG00000206695 NG_044045 +HGNC:47406 RNU6-443P RNA, U6 small nuclear 443, pseudogene pseudogene pseudogene Approved 18q12.3 18q12.3 2013-05-01 2013-05-01 106481318 ENSG00000202250 NG_044211 +HGNC:47407 RNU6-444P RNA, U6 small nuclear 444, pseudogene pseudogene pseudogene Approved 6q15 06q15 2013-05-01 2013-05-01 106479762 ENSG00000206715 NG_045694 +HGNC:47408 RNU6-445P RNA, U6 small nuclear 445, pseudogene pseudogene pseudogene Approved 9q21.13 09q21.13 2013-05-01 2013-05-01 106479763 ENSG00000252758 NG_044062 +HGNC:47409 RNU6-446P RNA, U6 small nuclear 446, pseudogene pseudogene pseudogene Approved 17q23.2 17q23.2 2013-05-01 2013-05-01 106481319 ENSG00000199697 NG_045769 +HGNC:47410 RNU6-447P RNA, U6 small nuclear 447, pseudogene pseudogene pseudogene Approved 11p15.5 11p15.5 2013-05-01 2013-05-01 106481320 ENSG00000222225 NG_044226 +HGNC:47411 RNU6-448P RNA, U6 small nuclear 448, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 2013-05-01 2013-05-01 106479764 ENSG00000252861 NG_044072 +HGNC:47412 RNU6-449P RNA, U6 small nuclear 449, pseudogene pseudogene pseudogene Approved 15q21.3 15q21.3 2013-05-01 2013-05-01 106481896 ENSG00000206641 NG_044749 +HGNC:47413 RNU6-450P RNA, U6 small nuclear 450, pseudogene pseudogene pseudogene Approved 17q23.1 17q23.1 2013-05-01 2013-05-01 106481321 ENSG00000201524 NG_044235 +HGNC:47414 RNU6-451P RNA, U6 small nuclear 451, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 2013-05-01 2013-05-01 106479765 ENSG00000199791 NG_045129 +HGNC:47415 RNU6-452P RNA, U6 small nuclear 452, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-05-01 2013-05-01 106481322 ENSG00000207135 NG_044241 +HGNC:47416 RNU6-453P RNA, U6 small nuclear 453, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 2013-05-01 2013-05-01 106479766 ENSG00000252628 NG_044087 +HGNC:47417 RNU6-454P RNA, U6 small nuclear 454, pseudogene pseudogene pseudogene Approved 3p25.1 03p25.1 2013-05-01 2013-05-01 106480582 ENSG00000201162 NG_044473 +HGNC:47418 RNU6-455P RNA, U6 small nuclear 455, pseudogene pseudogene pseudogene Approved 14q12 14q12 2013-05-01 2013-05-01 106479767 ENSG00000207412 NG_044098 +HGNC:47419 RNU6-456P RNA, U6 small nuclear 456, pseudogene pseudogene pseudogene Approved 5q31.1 05q31.1 2013-05-01 2013-05-01 106481323 ENSG00000207222 NG_044251 +HGNC:47420 RNU6-457P RNA, U6 small nuclear 457, pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 2013-05-01 2013-05-01 106479768 ENSG00000200869 NG_045708 +HGNC:47421 RNU6-458P RNA, U6 small nuclear 458, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 2013-05-01 2013-05-01 106481324 ENSG00000206906 NG_044259 +HGNC:47422 RNU6-459P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-08 +HGNC:47423 RNU6-460P RNA, U6 small nuclear 460, pseudogene pseudogene pseudogene Approved 5q31.2 05q31.2 2013-05-01 2013-05-01 106479769 ENSG00000212460 NG_044115 +HGNC:47424 RNU6-461P RNA, U6 small nuclear 461, pseudogene pseudogene pseudogene Approved 3q12.3 03q12.3 2013-05-01 2013-05-01 106481897 ENSG00000201065 NG_044759 +HGNC:47425 RNU6-462P RNA, U6 small nuclear 462, pseudogene pseudogene pseudogene Approved 4q24 04q24 2013-05-01 2013-05-01 106479770 ENSG00000199529 NG_045717 +HGNC:47426 RNU6-463P RNA, U6 small nuclear 463, pseudogene pseudogene pseudogene Approved 10q25.1 10q25.1 2013-05-01 2013-05-01 106481325 ENSG00000207068 NG_044268 +HGNC:47427 RNU6-464P RNA, U6 small nuclear 464, pseudogene pseudogene pseudogene Approved 6p12.1 06p12.1 2013-05-01 2013-05-01 106479771 ENSG00000253026 NG_044129 +HGNC:47428 RNU6-465P RNA, U6 small nuclear 465, pseudogene pseudogene pseudogene Approved 1p11.2 01p11.2 2013-05-01 2013-05-01 106481326 ENSG00000207149 NG_044276 +HGNC:47429 RNU6-466P RNA, U6 small nuclear 466, pseudogene pseudogene pseudogene Approved 15q13.3 15q13.3 2013-05-01 2013-05-01 106481770 ENSG00000212526 NG_045571 +HGNC:47430 RNU6-467P RNA, U6 small nuclear 467, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2015-02-04 106479772 ENSG00000276577 NG_045725 +HGNC:47431 RNU6-468P RNA, U6 small nuclear 468, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2013-05-01 106865374 ENSG00000206730 NG_046322 +HGNC:47432 RNU6-469P RNA, U6 small nuclear 469, pseudogene pseudogene pseudogene Approved 4q21.23 04q21.23 2013-05-01 2013-05-01 106481327 ENSG00000252062 NG_045791 +HGNC:47433 RNU6-470P RNA, U6 small nuclear 470, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 2013-05-01 2013-05-01 106479773 ENSG00000251763 NG_044144 +HGNC:47434 RNU6-471P RNA, U6 small nuclear 471, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 2013-05-01 2013-05-01 106479774 ENSG00000206671 NG_044150 +HGNC:47435 RNU6-472P RNA, U6 small nuclear 472, pseudogene pseudogene pseudogene Approved 12p11.1 12p11.1 2013-05-01 2013-05-01 106481328 ENSG00000207026 NG_044295 +HGNC:47436 RNU6-473P RNA, U6 small nuclear 473, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 2013-05-01 2013-05-01 106479775 ENSG00000251973 NG_045737 +HGNC:47437 RNU6-474P RNA, U6 small nuclear 474, pseudogene pseudogene pseudogene Approved 2q33.2 02q33.2 2013-05-01 2013-05-01 106481329 ENSG00000206970 NG_045154 +HGNC:47438 RNU6-475P RNA, U6 small nuclear 475, pseudogene pseudogene pseudogene Approved 6q22.1 06q22.1 2013-05-01 2013-05-01 106479776 ENSG00000251882 NG_044164 +HGNC:47439 RNU6-476P RNA, U6 small nuclear 476, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 2013-05-01 2013-05-01 106479777 ENSG00000207457 NG_044172 +HGNC:47440 RNU6-477P RNA, U6 small nuclear 477, pseudogene pseudogene pseudogene Approved 5q35.1 05q35.1 2013-05-01 2013-05-01 106481330 ENSG00000206614 NG_044310 +HGNC:47441 RNU6-478P RNA, U6 small nuclear 478, pseudogene pseudogene pseudogene Approved 10q23.1 10q23.1 2013-05-01 2013-05-01 106479778 ENSG00000200774 NG_044181 +HGNC:47442 RNU6-479P RNA, U6 small nuclear 479, pseudogene pseudogene pseudogene Approved 4q35.1 04q35.1 2013-05-01 2013-05-01 106481331 ENSG00000252157 NG_045800 +HGNC:47443 RNU6-480P RNA, U6 small nuclear 480, pseudogene pseudogene pseudogene Approved 5q11.1 05q11.1 2013-05-01 2013-05-01 106480583 ENSG00000207060 NG_044479 +HGNC:47444 RNU6-481P RNA, U6 small nuclear 481, pseudogene pseudogene pseudogene Approved 1q23.3 01q23.3 2013-05-01 2013-05-01 106479779 ENSG00000206921 NG_044189 +HGNC:47445 RNU6-482P RNA, U6 small nuclear 482, pseudogene pseudogene pseudogene Approved 5q22.2 05q22.2 2013-05-01 2013-05-01 106481332 ENSG00000212370 NG_045803 +HGNC:47446 RNU6-483P RNA, U6 small nuclear 483, pseudogene pseudogene pseudogene Approved 3p14.3 03p14.3 2013-05-01 2013-05-01 106479780 ENSG00000206815 NG_044193 +HGNC:47447 RNU6-484P RNA, U6 small nuclear 484, pseudogene pseudogene pseudogene Approved 5p13.2 05p13.2 2013-05-01 2013-05-01 106479781 ENSG00000206743 NG_044198 +HGNC:47448 RNU6-485P RNA, U6 small nuclear 485, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 2013-05-01 2013-05-01 106481333 ENSG00000200345 NG_045807 +HGNC:47449 RNU6-486P RNA, U6 small nuclear 486, pseudogene pseudogene pseudogene Approved 3q26.33 03q26.33 2013-05-01 2013-05-01 106481898 ENSG00000199986 NG_044767 +HGNC:47450 RNU6-487P RNA, U6 small nuclear 487, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2013-05-01 106480393 ENSG00000202300 NG_042975 +HGNC:47451 RNU6-488P RNA, U6 small nuclear 488, pseudogene pseudogene pseudogene Approved 3q11.1 03q11.1 2013-05-01 2013-05-01 106479782 ENSG00000251727 NG_044206 +HGNC:47452 RNU6-489P RNA, U6 small nuclear 489, pseudogene pseudogene pseudogene Approved 17q12 17q12 2013-05-01 2015-02-04 106481334 ENSG00000277341 NG_044348 +HGNC:47453 RNU6-490P RNA, U6 small nuclear 490, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-05-01 2013-05-01 106479783 ENSG00000199855 NG_045767 +HGNC:47454 RNU6-491P RNA, U6 small nuclear 491, pseudogene pseudogene pseudogene Approved 12p13.1 12p13.1 2013-05-01 2013-05-01 106479784 ENSG00000251908 NG_044224 +HGNC:47455 RNU6-492P RNA, U6 small nuclear 492, pseudogene pseudogene pseudogene Approved 9q31.2 09q31.2 2013-05-01 2013-05-01 106481335 ENSG00000199905 NG_044356 +HGNC:47456 RNU6-493P RNA, U6 small nuclear 493, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 2013-05-01 2013-05-01 106481336 ENSG00000212623 NG_044365 +HGNC:47457 RNU6-494P RNA, U6 small nuclear 494, pseudogene pseudogene pseudogene Approved 12p11.21 12p11.21 2013-05-01 2013-05-01 106479785 ENSG00000253063 NG_044230 +HGNC:47458 RNU6-495P RNA, U6 small nuclear 495, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 2013-05-01 2013-05-01 106481337 ENSG00000199865 NG_044370 +HGNC:47459 RNU6-496P RNA, U6 small nuclear 496, pseudogene pseudogene pseudogene Approved Xq23 Xq23 2013-05-01 2013-05-01 106480584 ENSG00000251954 NG_044486 +HGNC:47460 RNU6-497P RNA, U6 small nuclear 497, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 2013-05-01 2013-05-01 106479786 ENSG00000202186 NG_044237 +HGNC:47461 RNU6-498P RNA, U6 small nuclear 498, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 2013-05-01 2013-05-01 106481338 ENSG00000238478 NG_044379 +HGNC:47462 RNU6-499P RNA, U6 small nuclear 499, pseudogene pseudogene pseudogene Approved 4q21.22 04q21.22 2013-05-01 2013-05-01 106479787 ENSG00000202485 NG_044246 +HGNC:47463 RNU6-500P RNA, U6 small nuclear 500, pseudogene pseudogene pseudogene Approved 5q35.1 05q35.1 2013-05-01 2013-05-01 106479788 ENSG00000199219 NG_045782 +HGNC:47464 RNU6-501P RNA, U6 small nuclear 501, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2013-05-01 106481339 ENSG00000200942 NG_045824 +HGNC:47465 RNU6-502P RNA, U6 small nuclear 502, pseudogene pseudogene pseudogene Approved 6p22.2 06p22.2 2013-05-01 2013-05-01 106481899 ENSG00000199289 NG_044774 +HGNC:47466 RNU6-503P RNA, U6 small nuclear 503, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 2013-05-01 2013-05-01 106479789 ENSG00000252338 NG_045786 +HGNC:47467 RNU6-504P RNA, U6 small nuclear 504, pseudogene pseudogene pseudogene Approved Xp11.22 Xp11.22 2013-05-01 2013-05-01 106481340 ENSG00000252377 NG_044398 +HGNC:47468 RNU6-505P RNA, U6 small nuclear 505, pseudogene pseudogene pseudogene Approved 3q24 03q24 2013-05-01 2013-05-01 106479790 ENSG00000207156 NG_044272 +HGNC:47469 RNU6-506P RNA, U6 small nuclear 506, pseudogene pseudogene pseudogene Approved 4q31.1 04q31.1 2013-05-01 2013-05-01 106479791 ENSG00000252362 NG_044282 +HGNC:47470 RNU6-507P RNA, U6 small nuclear 507, pseudogene pseudogene pseudogene Approved 3q25.1 03q25.1 2013-05-01 2013-05-01 106481341 ENSG00000251854 NG_045831 +HGNC:47471 RNU6-508P RNA, U6 small nuclear 508, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 2013-05-01 2013-05-01 106480585 ENSG00000200101 NG_044492 +HGNC:47472 RNU6-509P RNA, U6 small nuclear 509, pseudogene pseudogene pseudogene Approved 3q23 03q23 2013-05-01 2013-05-01 106479792 ENSG00000200389 NG_044290 +HGNC:47473 RNU6-510P RNA, U6 small nuclear 510, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 2013-05-01 2013-05-01 106481342 ENSG00000212541 NG_044412 +HGNC:47474 RNU6-511P RNA, U6 small nuclear 511, pseudogene pseudogene pseudogene Approved 3q11.1 03q11.1 2013-05-01 2013-05-01 106479793 ENSG00000200366 NG_044300 +HGNC:47475 RNU6-512P RNA, U6 small nuclear 512, pseudogene pseudogene pseudogene Approved 2q21.3 02q21.3 2013-05-01 2013-05-01 106480394 ENSG00000201308 NG_045008 +HGNC:47476 RNU6-513P RNA, U6 small nuclear 513, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 2013-05-01 2013-05-01 106481343 ENSG00000251913 NG_045837 +HGNC:47477 RNU6-514P RNA, U6 small nuclear 514, pseudogene pseudogene pseudogene Approved 1p36.12 01p36.12 2013-05-01 2013-05-01 106480586 ENSG00000206935 NG_044502 +HGNC:47478 RNU6-515P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47479 RNU6-516P RNA, U6 small nuclear 516, pseudogene pseudogene pseudogene Approved 15q15.1 15q15.1 2013-05-01 2013-05-01 106479794 ENSG00000223313 NG_044306 +HGNC:47480 RNU6-517P RNA, U6 small nuclear 517, pseudogene pseudogene pseudogene Approved 7q31.31 07q31.31 2013-05-01 2013-05-01 106479795 ENSG00000207090 NG_044316 +HGNC:47481 RNU6-518P RNA, U6 small nuclear 518, pseudogene pseudogene pseudogene Approved 17q22 17q22 2013-05-01 2013-05-01 106481344 ENSG00000251865 NG_045840 +HGNC:47482 RNU6-519P RNA, U6 small nuclear 519, pseudogene pseudogene pseudogene Approved 8q11.21 08q11.21 2013-05-01 2013-05-01 106479796 ENSG00000222522 NG_044324 +HGNC:47483 RNU6-520P RNA, U6 small nuclear 520, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 2013-05-01 2013-05-01 106481345 ENSG00000207448 NG_044439 +HGNC:47484 RNU6-521P RNA, U6 small nuclear 521, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2013-05-01 2013-05-01 106481900 ENSG00000252472 NG_044782 +HGNC:47485 RNU6-522P RNA, U6 small nuclear 522, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106479797 ENSG00000201367 NG_045805 +HGNC:47486 RNU6-523P RNA, U6 small nuclear 523, pseudogene pseudogene pseudogene Approved Xp11.3 Xp11.3 2013-05-01 2013-05-01 106479798 ENSG00000252113 NG_044342 +HGNC:47487 RNU6-524P RNA, U6 small nuclear 524, pseudogene pseudogene pseudogene Approved 5q15 05q15 2013-05-01 2013-05-01 106481346 ENSG00000206997 NG_044444 +HGNC:47488 RNU6-525P RNA, U6 small nuclear 525, pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 2013-05-01 2013-05-01 106479799 ENSG00000200555 NG_044352 +HGNC:47489 RNU6-526P RNA, U6 small nuclear 526, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2013-05-01 2013-05-01 106481347 ENSG00000201815 NG_044454 +HGNC:47490 RNU6-527P RNA, U6 small nuclear 527, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106480587 ENSG00000200295 NG_044512 +HGNC:47491 RNU6-528P RNA, U6 small nuclear 528, pseudogene pseudogene pseudogene Approved 8p12 08p12 2013-05-01 2013-05-01 106479800 ENSG00000252735 NG_044362 +HGNC:47492 RNU6-529P RNA, U6 small nuclear 529, pseudogene pseudogene pseudogene Approved 10q23.2 10q23.2 2013-05-01 2013-05-01 106481348 ENSG00000200253 NG_045855 +HGNC:47493 RNU6-530P RNA, U6 small nuclear 530, pseudogene pseudogene pseudogene Approved 7q21.11 07q21.11 2013-05-01 2013-05-01 106479801 ENSG00000212482 NG_045817 +HGNC:47494 RNU6-531P RNA, U6 small nuclear 531, pseudogene pseudogene pseudogene Approved 4q31.1 04q31.1 2013-05-01 2013-05-01 106479802 ENSG00000252503 NG_044374 +HGNC:47495 RNU6-532P RNA, U6 small nuclear 532, pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 2013-05-01 2013-05-01 106481349 ENSG00000207045 NG_045167 +HGNC:47496 RNU6-533P RNA, U6 small nuclear 533, pseudogene pseudogene pseudogene Approved 8p12 08p12 2013-05-01 2013-05-01 106481901 ENSG00000206871 NG_044793 +HGNC:47497 RNU6-534P RNA, U6 small nuclear 534, pseudogene pseudogene pseudogene Approved 7p21.3 07p21.3 2013-05-01 2013-05-01 106481978 ENSG00000201747 NG_043396 +HGNC:47498 RNU6-535P RNA, U6 small nuclear 535, pseudogene pseudogene pseudogene Approved 10p14 10p14 2013-05-01 2013-05-01 106479803 ENSG00000207453 NG_044384 +HGNC:47499 RNU6-536P RNA, U6 small nuclear 536, pseudogene pseudogene pseudogene Approved 1p34.2 01p34.2 2013-05-01 2013-05-01 106481350 ENSG00000200254 NG_045862 +HGNC:47500 RNU6-537P RNA, U6 small nuclear 537, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 2013-05-01 2013-05-01 106479804 ENSG00000253086 NG_044393 +HGNC:47501 RNU6-538P RNA, U6 small nuclear 538, pseudogene pseudogene pseudogene Approved 9p12 09p12 2013-05-01 2015-02-04 106479805 ENSG00000275030 NG_045830 +HGNC:47502 RNU6-539P RNA, U6 small nuclear 539, pseudogene pseudogene pseudogene Approved 14q21.3 14q21.3 2013-05-01 2013-05-01 106481351 ENSG00000252474 NG_051075 +HGNC:47503 RNU6-540P RNA, U6 small nuclear 540, pseudogene pseudogene pseudogene Approved 5q12.3 05q12.3 2013-05-01 2013-05-01 106479806 ENSG00000207352 NG_045833 +HGNC:47504 RNU6-541P RNA, U6 small nuclear 541, pseudogene pseudogene pseudogene Approved 14q12 14q12 2013-05-01 2013-05-01 106481352 ENSG00000207440 NG_044487 +HGNC:47505 RNU6-542P RNA, U6 small nuclear 542, pseudogene pseudogene pseudogene Approved 2p13.1 02p13.1 2013-05-01 2013-05-01 106480588 ENSG00000252214 NG_045174 +HGNC:47506 RNU6-543P RNA, U6 small nuclear 543, pseudogene pseudogene pseudogene Approved 10q21.3 10q21.3 2013-05-01 2013-05-01 106479807 ENSG00000199446 NG_044418 +HGNC:47507 RNU6-544P RNA, U6 small nuclear 544, pseudogene pseudogene pseudogene Approved 11q14.1 11q14.1 2013-05-01 2013-05-01 106481353 ENSG00000200146 NG_044495 +HGNC:47508 RNU6-545P RNA, U6 small nuclear 545, pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 RNU6-292P RNA, U6 small nuclear 292, pseudogene 2013-05-01 2015-10-14 106479808 ENSG00000199551 NG_044427 +HGNC:47509 RNU6-546P RNA, U6 small nuclear 546, pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 2013-05-01 2013-05-01 106479809 ENSG00000206718 NG_044435 +HGNC:47510 RNU6-547P RNA, U6 small nuclear 547, pseudogene pseudogene pseudogene Approved 3q26.31 03q26.31 2013-05-01 2013-05-01 106481902 ENSG00000252082 NG_044800 +HGNC:47511 RNU6-548P RNA, U6 small nuclear 548, pseudogene pseudogene pseudogene Approved 2p14 02p14 2013-05-01 2013-05-01 106481354 ENSG00000252892 NG_045874 +HGNC:47512 RNU6-549P RNA, U6 small nuclear 549, pseudogene pseudogene pseudogene Approved 15q22.31 15q22.31 2013-05-01 2013-05-01 106479810 ENSG00000207162 NG_045844 +HGNC:47513 RNU6-550P RNA, U6 small nuclear 550, pseudogene pseudogene pseudogene Approved 4q27 04q27 2013-05-01 2013-05-01 106481355 ENSG00000212359 NG_044515 +HGNC:47514 RNU6-551P RNA, U6 small nuclear 551, pseudogene pseudogene pseudogene Approved 4q25 04q25 2013-05-01 2013-05-01 106479811 ENSG00000252470 NG_044448 +HGNC:47515 RNU6-552P RNA, U6 small nuclear 552, pseudogene pseudogene pseudogene Approved 14q21.2 14q21.2 2013-05-01 2013-05-01 106481356 ENSG00000199739 NG_044523 +HGNC:47516 RNU6-553P RNA, U6 small nuclear 553, pseudogene pseudogene pseudogene Approved 4q24 04q24 2013-05-01 2013-05-01 106480589 ENSG00000200917 NG_045176 +HGNC:47517 RNU6-554P RNA, U6 small nuclear 554, pseudogene pseudogene pseudogene Approved 15q15.3 15q15.3 2013-05-01 2013-05-01 106479812 ENSG00000222398 NG_045851 +HGNC:47518 RNU6-555P RNA, U6 small nuclear 555, pseudogene pseudogene pseudogene Approved Xq21.31 Xq21.31 2013-05-01 2013-05-01 106479813 ENSG00000207515 NG_044461 +HGNC:47519 RNU6-556P RNA, U6 small nuclear 556, pseudogene pseudogene pseudogene Approved 5q33.3 05q33.3 2013-05-01 2013-05-01 106481357 ENSG00000199468 NG_044531 +HGNC:47520 RNU6-557P RNA, U6 small nuclear 557, pseudogene pseudogene pseudogene Approved 3p13 03p13 2013-05-01 2013-05-01 106479814 ENSG00000252651 NG_044470 +HGNC:47521 RNU6-558P RNA, U6 small nuclear 558, pseudogene pseudogene pseudogene Approved 12q24.22 12q24.22 2013-05-01 2013-05-01 106481358 ENSG00000201382 NG_045885 +HGNC:47522 RNU6-559P RNA, U6 small nuclear 559, pseudogene pseudogene pseudogene Approved 9p22.3 09p22.3 2013-05-01 2013-05-01 106481771 ENSG00000251960 NG_043773 +HGNC:47523 RNU6-560P RNA, U6 small nuclear 560, pseudogene pseudogene pseudogene Approved 11q14.2 11q14.2 2013-05-01 2013-05-01 106480590 ENSG00000200877 NG_044535 +HGNC:47524 RNU6-561P RNA, U6 small nuclear 561, pseudogene pseudogene pseudogene Approved 2p12 02p12 2013-05-01 2013-05-01 106479815 ENSG00000252031 NG_044478 +HGNC:47525 RNU6-562P RNA, U6 small nuclear 562, pseudogene pseudogene pseudogene Approved Xq13.3 Xq13.3 2013-05-01 2013-05-01 106479816 ENSG00000199601 NG_044484 +HGNC:47526 RNU6-563P RNA, U6 small nuclear 563, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 2013-05-01 2013-05-01 106481359 ENSG00000201742 NG_044545 +HGNC:47527 RNU6-564P RNA, U6 small nuclear 564, pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 2013-05-01 2013-05-01 106479817 ENSG00000222915 NG_045870 +HGNC:47528 RNU6-565P RNA, U6 small nuclear 565, pseudogene pseudogene pseudogene Approved 7p14.1 07p14.1 2013-05-01 2013-05-01 106481360 ENSG00000222869 NG_044552 +HGNC:47529 RNU6-566P RNA, U6 small nuclear 566, pseudogene pseudogene pseudogene Approved 2p21 02p21 2013-05-01 2013-05-01 106481903 ENSG00000252599 NG_044808 +HGNC:47530 RNU6-567P RNA, U6 small nuclear 567, pseudogene pseudogene pseudogene Approved 18q21.32 18q21.32 2013-05-01 2013-05-01 106479818 ENSG00000252555 NG_044499 +HGNC:47531 RNU6-568P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47532 RNU6-569P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47533 RNU6-570P RNA, U6 small nuclear 570, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2013-05-01 106481361 ENSG00000252860 NG_045897 +HGNC:47534 RNU6-571P RNA, U6 small nuclear 571, pseudogene pseudogene pseudogene Approved 10q22.1 10q22.1 2013-05-01 2013-05-01 106479819 ENSG00000206855 NG_044510 +HGNC:47535 RNU6-572P RNA, U6 small nuclear 572, pseudogene pseudogene pseudogene Approved 5q31.2 05q31.2 2013-05-01 2013-05-01 106481362 ENSG00000252533 NG_044567 +HGNC:47536 RNU6-573P RNA, U6 small nuclear 573, pseudogene pseudogene pseudogene Approved 4p15.1 04p15.1 2013-05-01 2013-05-01 106480591 ENSG00000206665 NG_044543 +HGNC:47537 RNU6-574P RNA, U6 small nuclear 574, pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 2013-05-01 2013-05-01 106479820 ENSG00000206992 NG_045878 +HGNC:47538 RNU6-575P RNA, U6 small nuclear 575, pseudogene pseudogene pseudogene Approved 7p14.1 07p14.1 2013-05-01 2013-05-01 106481363 ENSG00000223258 NG_044577 +HGNC:47539 RNU6-576P RNA, U6 small nuclear 576, pseudogene pseudogene pseudogene Approved 10p15.3 10p15.3 2013-05-01 2013-05-01 106479821 ENSG00000212156 NG_044528 +HGNC:47540 RNU6-577P RNA, U6 small nuclear 577, pseudogene pseudogene pseudogene Approved 2p22.2 02p22.2 2013-05-01 2013-05-01 106479822 ENSG00000252756 NG_045882 +HGNC:47541 RNU6-578P RNA, U6 small nuclear 578, pseudogene pseudogene pseudogene Approved 4p15.33 04p15.33 2013-05-01 2013-05-01 106481904 ENSG00000212282 NG_044816 +HGNC:47542 RNU6-579P RNA, U6 small nuclear 579, pseudogene pseudogene pseudogene Approved 2q21.2 02q21.2 2013-05-01 2013-05-01 106481364 ENSG00000252688 NG_044586 +HGNC:47543 RNU6-580P RNA, U6 small nuclear 580, pseudogene pseudogene pseudogene Approved 2q24.2 02q24.2 2013-05-01 2013-05-01 106480395 ENSG00000202029 NG_042991 +HGNC:47544 RNU6-581P RNA, U6 small nuclear 581, pseudogene pseudogene pseudogene Approved 7q31.31 07q31.31 2013-05-01 2013-05-01 106479823 ENSG00000252023 NG_045178 +HGNC:47545 RNU6-582P RNA, U6 small nuclear 582, pseudogene pseudogene pseudogene Approved 4q32.1 04q32.1 2013-05-01 2013-05-01 106481365 ENSG00000199859 NG_044596 +HGNC:47546 RNU6-583P RNA, U6 small nuclear 583, pseudogene pseudogene pseudogene Approved 4q28.2 04q28.2 2013-05-01 2013-05-01 106479824 ENSG00000251821 NG_045890 +HGNC:47547 RNU6-584P RNA, U6 small nuclear 584, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 2013-05-01 2013-05-01 106479825 ENSG00000222282 NG_044557 +HGNC:47548 RNU6-585P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47549 RNU6-586P RNA, U6 small nuclear 586, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-01 2013-05-01 106480592 ENSG00000253074 NG_045891 +HGNC:47550 RNU6-587P RNA, U6 small nuclear 587, pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 2013-05-01 2013-05-01 106481366 ENSG00000212584 NG_044603 +HGNC:47551 RNU6-588P RNA, U6 small nuclear 588, pseudogene pseudogene pseudogene Approved 5q32 05q32 2013-05-01 2013-05-01 106479826 ENSG00000222213 NG_044563 +HGNC:47552 RNU6-589P RNA, U6 small nuclear 589, pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 2013-05-01 2013-05-01 106481367 ENSG00000252294 NG_044614 +HGNC:47553 RNU6-590P RNA, U6 small nuclear 590, pseudogene pseudogene pseudogene Approved 12p13.1 12p13.1 2013-05-01 2013-05-01 106480593 ENSG00000201909 NG_044559 +HGNC:47554 RNU6-591P RNA, U6 small nuclear 591, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 2013-05-01 2013-05-01 106479827 ENSG00000207122 NG_044573 +HGNC:47555 RNU6-592P RNA, U6 small nuclear 592, pseudogene pseudogene pseudogene Approved 11q24.1 11q24.1 2013-05-01 2013-05-01 106481368 ENSG00000223265 NG_045913 +HGNC:47556 RNU6-593P RNA, U6 small nuclear 593, pseudogene pseudogene pseudogene Approved 11p15.1 11p15.1 2013-05-01 2013-05-01 106479828 ENSG00000201586 NG_045901 +HGNC:47557 RNU6-594P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47558 RNU6-595P RNA, U6 small nuclear 595, pseudogene pseudogene pseudogene Approved 12q14.1 12q14.1 2013-05-01 2013-05-01 106479829 ENSG00000200814 NG_044591 +HGNC:47559 RNU6-596P RNA, U6 small nuclear 596, pseudogene pseudogene pseudogene Approved 8q12.1 08q12.1 2013-05-01 2013-05-01 106481369 ENSG00000202265 NG_044629 +HGNC:47560 RNU6-597P RNA, U6 small nuclear 597, pseudogene pseudogene pseudogene Approved 14q23.2 14q23.2 2013-05-01 2013-05-01 106481905 ENSG00000202490 NG_045997 +HGNC:47561 RNU6-598P RNA, U6 small nuclear 598, pseudogene pseudogene pseudogene Approved 10p11.23 10p11.23 2013-05-01 2013-05-01 106479830 ENSG00000200887 NG_044598 +HGNC:47562 RNU6-599P RNA, U6 small nuclear 599, pseudogene pseudogene pseudogene Approved 9p11.2 09p11.2 2013-05-01 2013-05-01 106481370 ENSG00000238529 NG_045919 +HGNC:47563 RNU6-600P RNA, U6 small nuclear 600, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 2013-05-01 2013-05-01 106479831 ENSG00000199394 NG_044609 +HGNC:47564 RNU6-601P RNA, U6 small nuclear 601, pseudogene pseudogene pseudogene Approved 2q23.2 02q23.2 2013-05-01 2013-05-01 106479832 ENSG00000207270 NG_044617 +HGNC:47565 RNU6-602P RNA, U6 small nuclear 602, pseudogene pseudogene pseudogene Approved 14q12 14q12 2013-05-01 2013-05-01 106481371 ENSG00000223087 NG_044642 +HGNC:47566 RNU6-603P RNA, U6 small nuclear 603, pseudogene pseudogene pseudogene Approved 6p21.32 06p21.32 RNU6-825P RNA, U6 small nuclear 825, pseudogene 2013-05-01 2016-02-10 106480594 ENSG00000223335 NG_044565 +HGNC:47567 RNU6-604P RNA, U6 small nuclear 604, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 2013-05-01 2013-05-01 106479833 ENSG00000212219 NG_045184 +HGNC:47568 RNU6-605P RNA, U6 small nuclear 605, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 2013-05-01 2013-05-01 106481372 ENSG00000199963 NG_044651 +HGNC:47569 RNU6-606P RNA, U6 small nuclear 606, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 2013-05-01 2013-05-01 106479834 ENSG00000207452 NG_044633 +HGNC:47570 RNU6-607P RNA, U6 small nuclear 607, pseudogene pseudogene pseudogene Approved 8p11.23 08p11.23 2013-05-01 2013-05-01 106481772 ENSG00000223215 NG_043782 +HGNC:47571 RNU6-608P RNA, U6 small nuclear 608, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 2013-05-01 2013-05-01 106481373 ENSG00000206654 NG_044657 +HGNC:47572 RNU6-609P RNA, U6 small nuclear 609, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2013-05-01 106481906 ENSG00000202329 NG_044833 +HGNC:47573 RNU6-610P RNA, U6 small nuclear 610, pseudogene pseudogene pseudogene Approved 15q15.3 15q15.3 2013-05-01 2013-05-01 106479835 ENSG00000206991 NG_045922 +HGNC:47574 RNU6-611P RNA, U6 small nuclear 611, pseudogene pseudogene pseudogene Approved 19q13.32 19q13.32 2013-05-01 2013-05-01 106479836 ENSG00000207003 NG_045927 +HGNC:47575 RNU6-612P RNA, U6 small nuclear 612, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 2013-05-01 2013-05-01 106481374 ENSG00000252718 NG_045189 +HGNC:47576 RNU6-613P RNA, U6 small nuclear 613, pseudogene pseudogene pseudogene Approved 2q36.3 02q36.3 2013-05-01 2013-05-01 106479837 ENSG00000222344 NG_045187 +HGNC:47577 RNU6-614P RNA, U6 small nuclear 614, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 2013-05-01 2013-05-01 106481375 ENSG00000207097 NG_045943 +HGNC:47578 RNU6-615P RNA, U6 small nuclear 615, pseudogene pseudogene pseudogene Approved 4q21.22 04q21.22 2013-05-01 2013-05-01 106480595 ENSG00000251874 NG_044574 +HGNC:47579 RNU6-616P RNA, U6 small nuclear 616, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2013-05-01 2013-05-01 106479838 ENSG00000207081 NG_044661 +HGNC:47580 RNU6-617P RNA, U6 small nuclear 617, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 2013-05-01 2013-05-01 106479839 ENSG00000251956 NG_045939 +HGNC:47581 RNU6-618P RNA, U6 small nuclear 618, pseudogene pseudogene pseudogene Approved 12p11.21 12p11.21 2013-05-01 2013-05-01 106481376 ENSG00000200388 NG_044676 +HGNC:47582 RNU6-619P RNA, U6 small nuclear 619, pseudogene pseudogene pseudogene Approved 2q36.1 02q36.1 2013-05-01 2013-05-01 106479840 ENSG00000202016 NG_045946 +HGNC:47583 RNU6-620P RNA, U6 small nuclear 620, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 2013-05-01 2013-05-01 106481377 ENSG00000206744 NG_044687 +HGNC:47584 RNU6-621P RNA, U6 small nuclear 621, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-01 2013-05-01 106481907 ENSG00000201622 NG_046005 +HGNC:47585 RNU6-622P RNA, U6 small nuclear 622, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 2013-05-01 2013-05-01 106479841 ENSG00000206999 NG_044682 +HGNC:47586 RNU6-623P RNA, U6 small nuclear 623, pseudogene pseudogene pseudogene Approved 17q23.2 17q23.2 2013-05-01 2013-05-01 106481378 ENSG00000200013 NG_044695 +HGNC:47587 RNU6-624P RNA, U6 small nuclear 624, pseudogene pseudogene pseudogene Approved 2q36.3 02q36.3 2013-05-01 2013-05-01 106479842 ENSG00000200281 NG_044690 +HGNC:47588 RNU6-625P RNA, U6 small nuclear 625, pseudogene pseudogene pseudogene Approved 17q25.3 17q25.3 2013-05-01 2013-05-01 106479843 ENSG00000238658 NG_045954 +HGNC:47589 RNU6-626P RNA, U6 small nuclear 626, pseudogene pseudogene pseudogene Approved 6p12.1 06p12.1 2013-05-01 2013-05-01 106481379 ENSG00000200224 NG_044705 +HGNC:47590 RNU6-627P RNA, U6 small nuclear 627, pseudogene pseudogene pseudogene Approved 2q24.3 02q24.3 2013-05-01 2013-05-01 106480596 ENSG00000200902 NG_044584 +HGNC:47591 RNU6-628P RNA, U6 small nuclear 628, pseudogene pseudogene pseudogene Approved 8q24.13 08q24.13 2013-05-01 2013-05-01 106480396 ENSG00000222607 NG_042999 +HGNC:47592 RNU6-629P RNA, U6 small nuclear 629, pseudogene pseudogene pseudogene Approved 2q31.2 02q31.2 2013-05-01 2013-05-01 106479844 ENSG00000206788 NG_044711 +HGNC:47593 RNU6-630P RNA, U6 small nuclear 630, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 2013-05-01 2013-05-01 106481380 ENSG00000212560 NG_044714 +HGNC:47594 RNU6-631P RNA, U6 small nuclear 631, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 2013-05-01 2013-05-01 106479845 ENSG00000200790 NG_045959 +HGNC:47595 RNU6-632P RNA, U6 small nuclear 632, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-05-01 2013-05-01 106479846 ENSG00000251711 NG_044728 +HGNC:47596 RNU6-633P RNA, U6 small nuclear 633, pseudogene pseudogene pseudogene Approved 16p13.13 16p13.13 2013-05-01 2013-05-01 106481381 ENSG00000199482 NG_044722 +HGNC:47597 RNU6-634P RNA, U6 small nuclear 634, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 2013-05-01 2013-05-01 106479847 ENSG00000239189 NG_045192 +HGNC:47598 RNU6-635P RNA, U6 small nuclear 635, pseudogene pseudogene pseudogene Approved 4q24 04q24 2013-05-01 2013-05-01 106481382 ENSG00000252460 NG_044732 +HGNC:47599 RNU6-636P RNA, U6 small nuclear 636, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 2013-05-01 2013-05-01 106480597 ENSG00000207328 NG_044594 +HGNC:47600 RNU6-637P RNA, U6 small nuclear 637, pseudogene pseudogene pseudogene Approved 3q26.2 03q26.2 2013-05-01 2013-05-01 106479848 ENSG00000206777 NG_044744 +HGNC:47601 RNU6-638P RNA, U6 small nuclear 638, pseudogene pseudogene pseudogene Approved 17q25.3 17q25.3 2013-05-01 2013-05-01 106481383 ENSG00000252391 NG_045965 +HGNC:47602 RNU6-639P RNA, U6 small nuclear 639, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 2013-05-01 2013-05-01 106479849 ENSG00000206801 NG_044753 +HGNC:47603 RNU6-640P RNA, U6 small nuclear 640, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 2013-05-01 2013-05-01 106479850 ENSG00000200563 NG_045971 +HGNC:47604 RNU6-641P RNA, U6 small nuclear 641, pseudogene pseudogene pseudogene Approved Xp21.1 Xp21.1 2013-05-01 2013-05-01 106481908 ENSG00000206733 NG_044850 +HGNC:47605 RNU6-642P RNA, U6 small nuclear 642, pseudogene pseudogene pseudogene Approved 2q35 02q35 2013-05-01 2013-05-01 106481384 ENSG00000200029 NG_045194 +HGNC:47606 RNU6-643P RNA, U6 small nuclear 643, pseudogene pseudogene pseudogene Approved 6p21.1 06p21.1 2013-05-01 2013-05-01 106479851 ENSG00000206745 NG_044769 +HGNC:47607 RNU6-644P RNA, U6 small nuclear 644, pseudogene pseudogene pseudogene Approved 5q23.1 05q23.1 2013-05-01 2013-05-01 106481385 ENSG00000212457 NG_044757 +HGNC:47608 RNU6-645P RNA, U6 small nuclear 645, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106479852 ENSG00000201519 NG_044779 +HGNC:47609 RNU6-646P RNA, U6 small nuclear 646, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-01 2013-05-01 106481386 ENSG00000201441 NG_044765 +HGNC:47610 RNU6-647P RNA, U6 small nuclear 647, pseudogene pseudogene pseudogene Approved 2p22.3 02p22.3 2013-05-01 2013-05-01 106480598 ENSG00000201113 NG_044601 +HGNC:47611 RNU6-648P RNA, U6 small nuclear 648, pseudogene pseudogene pseudogene Approved Xq23 Xq23 2013-05-01 2013-05-01 106479853 ENSG00000222122 NG_044786 +HGNC:47612 RNU6-649P RNA, U6 small nuclear 649, pseudogene pseudogene pseudogene Approved 2p25.2 02p25.2 2013-05-01 2013-05-01 106479854 ENSG00000207192 NG_044795 +HGNC:47613 RNU6-650P RNA, U6 small nuclear 650, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 2013-05-01 2013-05-01 106481387 ENSG00000202528 NG_045197 +HGNC:47614 RNU6-651P RNA, U6 small nuclear 651, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 2013-05-01 2013-05-01 106479855 ENSG00000222972 NG_045199 +HGNC:47615 RNU6-652P RNA, U6 small nuclear 652, pseudogene pseudogene pseudogene Approved 4q12 04q12 2013-05-01 2013-05-01 106481388 ENSG00000202358 NG_045980 +HGNC:47616 RNU6-653P RNA, U6 small nuclear 653, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106480397 ENSG00000199944 NG_045281 +HGNC:47617 RNU6-654P RNA, U6 small nuclear 654, pseudogene pseudogene pseudogene Approved 11q22.3 11q22.3 2013-05-01 2013-05-01 106481909 ENSG00000201243 NG_044860 +HGNC:47618 RNU6-655P RNA, U6 small nuclear 655, pseudogene pseudogene pseudogene Approved 18q23 18q23 2013-05-01 2013-05-01 106479856 ENSG00000199728 NG_044811 +HGNC:47619 RNU6-656P RNA, U6 small nuclear 656, pseudogene pseudogene pseudogene Approved 8q11.1 08q11.1 2013-05-01 2013-05-01 106479857 ENSG00000252594 NG_044821 +HGNC:47620 RNU6-657P RNA, U6 small nuclear 657, pseudogene pseudogene pseudogene Approved 10q23.33 10q23.33 2013-05-01 2013-05-01 106481389 ENSG00000206631 NG_044791 +HGNC:47621 RNU6-658P RNA, U6 small nuclear 658, pseudogene pseudogene pseudogene Approved 5q13.3 05q13.3 2013-05-01 2013-05-01 106479858 ENSG00000207336 NG_045998 +HGNC:47622 RNU6-659P RNA, U6 small nuclear 659, pseudogene pseudogene pseudogene Approved 14q24.2 14q24.2 2013-05-01 2013-05-01 106481390 ENSG00000252263 NG_044798 +HGNC:47623 RNU6-660P RNA, U6 small nuclear 660, pseudogene pseudogene pseudogene Approved 5p15.1 05p15.1 2013-05-01 2013-05-01 106480599 ENSG00000201436 NG_044611 +HGNC:47624 RNU6-661P RNA, U6 small nuclear 661, pseudogene pseudogene pseudogene Approved 5q12.1 05q12.1 2013-05-01 2013-05-01 106479859 ENSG00000199279 NG_046002 +HGNC:47625 RNU6-662P RNA, U6 small nuclear 662, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106479860 ENSG00000206980 NG_044845 +HGNC:47626 RNU6-663P RNA, U6 small nuclear 663, pseudogene pseudogene pseudogene Approved 8p12 08p12 2013-05-01 2013-05-01 106481391 ENSG00000212407 NG_044806 +HGNC:47627 RNU6-664P RNA, U6 small nuclear 664, pseudogene pseudogene pseudogene Approved 2q33.3 02q33.3 2013-05-01 2013-05-01 106479861 ENSG00000199251 NG_046009 +HGNC:47628 RNU6-665P RNA, U6 small nuclear 665, pseudogene pseudogene pseudogene Approved 8q11.21 08q11.21 2013-05-01 2013-05-01 106481392 ENSG00000207369 NG_045992 +HGNC:47629 RNU6-666P RNA, U6 small nuclear 666, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-05-01 2013-05-01 106480600 ENSG00000200369 NG_044619 +HGNC:47630 RNU6-667P RNA, U6 small nuclear 667, pseudogene pseudogene pseudogene Approved 15q25.1 15q25.1 2013-05-01 2013-05-01 106479862 ENSG00000252995 NG_044864 +HGNC:47631 RNU6-668P RNA, U6 small nuclear 668, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 2013-05-01 2013-05-01 106481393 ENSG00000201050 NG_045996 +HGNC:47632 RNU6-669P RNA, U6 small nuclear 669, pseudogene pseudogene pseudogene Approved 9q22.32 09q22.32 2013-05-01 2013-05-01 107063537 ENSG00000202445 NG_046355 +HGNC:47633 RNU6-670P RNA, U6 small nuclear 670, pseudogene pseudogene pseudogene Approved 3p25.3 03p25.3 2013-05-01 2013-05-01 106479863 ENSG00000201182 NG_046017 +HGNC:47634 RNU6-671P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47635 RNU6-672P RNA, U6 small nuclear 672, pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 2013-05-01 2013-05-01 106481910 ENSG00000206638 NG_046014 +HGNC:47636 RNU6-673P RNA, U6 small nuclear 673, pseudogene pseudogene pseudogene Approved 10q22.3 10q22.3 2013-05-01 2013-05-01 106481394 ENSG00000201954 NG_044832 +HGNC:47637 RNU6-674P RNA, U6 small nuclear 674, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 2013-05-01 2013-05-01 106481773 ENSG00000200701 NG_045095 +HGNC:47638 RNU6-675P RNA, U6 small nuclear 675, pseudogene pseudogene pseudogene Approved 2q14.3 02q14.3 2013-05-01 2013-05-01 106479864 ENSG00000206963 NG_045201 +HGNC:47639 RNU6-676P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47640 RNU6-677P RNA, U6 small nuclear 677, pseudogene pseudogene pseudogene Approved 9q22.32 09q22.32 2013-05-01 2013-05-01 106481395 ENSG00000252723 NG_044840 +HGNC:47641 RNU6-678P RNA, U6 small nuclear 678, pseudogene pseudogene pseudogene Approved 3q22.1 03q22.1 2013-05-01 2013-05-01 106479865 ENSG00000252641 NG_044885 +HGNC:47642 RNU6-679P RNA, U6 small nuclear 679, pseudogene pseudogene pseudogene Approved 5p15.2 05p15.2 2013-05-01 2013-05-01 106479866 ENSG00000212305 NG_044893 +HGNC:47643 RNU6-680P RNA, U6 small nuclear 680, pseudogene pseudogene pseudogene Approved 5q13.3 05q13.3 2013-05-01 2013-05-01 106480601 ENSG00000207333 NG_045915 +HGNC:47644 RNU6-681P RNA, U6 small nuclear 681, pseudogene pseudogene pseudogene Approved 3q26.32 03q26.32 2013-05-01 2013-05-01 106481911 ENSG00000200882 NG_046021 +HGNC:47645 RNU6-682P RNA, U6 small nuclear 682, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2013-05-01 2013-05-01 106479867 ENSG00000200713 NG_044899 +HGNC:47647 RNU6-684P RNA, U6 small nuclear 684, pseudogene pseudogene pseudogene Approved 14q32.33 14q32.33 2013-05-01 2013-05-01 106481396 ENSG00000222761 NG_044849 +HGNC:47648 RNU6-685P RNA, U6 small nuclear 685, pseudogene pseudogene pseudogene Approved 2p12 02p12 2013-05-01 2013-05-01 106479868 ENSG00000252897 NG_044909 +HGNC:47649 RNU6-686P RNA, U6 small nuclear 686, pseudogene pseudogene pseudogene Approved 15q22.31 15q22.31 2013-05-01 2013-05-01 106481397 ENSG00000201709 NG_044858 +HGNC:47650 RNU6-687P RNA, U6 small nuclear 687, pseudogene pseudogene pseudogene Approved 10q21.1 10q21.1 2013-05-01 2013-05-01 106479869 ENSG00000252252 NG_046037 +HGNC:47651 RNU6-688P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-08 +HGNC:47652 RNU6-689P RNA, U6 small nuclear 689, pseudogene pseudogene pseudogene Approved 14q24.3 14q24.3 2013-05-01 2013-05-01 106479870 ENSG00000206924 NG_044921 +HGNC:47653 RNU6-690P RNA, U6 small nuclear 690, pseudogene pseudogene pseudogene Approved 8q22.1 08q22.1 2013-05-01 2013-05-01 106481398 ENSG00000202112 NG_046013 +HGNC:47654 RNU6-691P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-08 +HGNC:47655 RNU6-692P RNA, U6 small nuclear 692, pseudogene pseudogene pseudogene Approved 2q22.3 02q22.3 2013-05-01 2013-05-01 106479871 ENSG00000207225 NG_044930 +HGNC:47656 RNU6-693P RNA, U6 small nuclear 693, pseudogene pseudogene pseudogene Approved 1q24.3 01q24.3 2013-05-01 2013-05-01 106481399 ENSG00000251943 NG_044873 +HGNC:47657 RNU6-694P RNA, U6 small nuclear 694, pseudogene pseudogene pseudogene Approved 9p24.2 09p24.2 2013-05-01 2013-05-01 106479872 ENSG00000200941 NG_042903 +HGNC:47658 RNU6-695P RNA, U6 small nuclear 695, pseudogene pseudogene pseudogene Approved 1p22.2 01p22.2 2013-05-01 2013-05-01 106481400 ENSG00000212459 NG_044880 +HGNC:47659 RNU6-696P RNA, U6 small nuclear 696, pseudogene pseudogene pseudogene Approved 21q22.13 21q22.13 2013-05-01 2013-05-01 106479873 ENSG00000212136 NG_042909 +HGNC:47660 RNU6-697P RNA, U6 small nuclear 697, pseudogene pseudogene pseudogene Approved 10q22.1 10q22.1 2013-05-01 2013-05-01 106479874 ENSG00000200218 NG_045244 +HGNC:47661 RNU6-698P RNA, U6 small nuclear 698, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106481401 ENSG00000200393 NG_044890 +HGNC:47662 RNU6-699P RNA, U6 small nuclear 699, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 2013-05-01 2013-05-01 106479875 ENSG00000252890 NG_042923 +HGNC:47663 RNU6-700P RNA, U6 small nuclear 700, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 2013-05-01 2013-05-01 106480398 ENSG00000212345 NG_043017 +HGNC:47664 RNU6-701P RNA, U6 small nuclear 701, pseudogene pseudogene pseudogene Approved 5q23.1 05q23.1 2013-05-01 2013-05-01 106481402 ENSG00000206786 NG_046029 +HGNC:47665 RNU6-702P RNA, U6 small nuclear 702, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 2013-05-01 2013-05-01 106481912 ENSG00000201852 NG_044882 +HGNC:47666 RNU6-703P RNA, U6 small nuclear 703, pseudogene pseudogene pseudogene Approved 8q22.2 08q22.2 2013-05-01 2013-05-01 106479876 ENSG00000252755 NG_042930 +HGNC:47667 RNU6-704P RNA, U6 small nuclear 704, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2013-05-01 106479877 ENSG00000201032 NG_042939 +HGNC:47668 RNU6-705P RNA, U6 small nuclear 705, pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 2013-05-01 2013-05-01 106481403 ENSG00000222533 NG_044905 +HGNC:47669 RNU6-706P RNA, U6 small nuclear 706, pseudogene pseudogene pseudogene Approved 18q12.2 18q12.2 2013-05-01 2013-05-01 106479878 ENSG00000253038 NG_042947 +HGNC:47670 RNU6-707P RNA, U6 small nuclear 707, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 2013-05-01 2013-05-01 107075318 ENSG00000201517 NG_046374 +HGNC:47671 RNU6-708P RNA, U6 small nuclear 708, pseudogene pseudogene pseudogene Approved 18q21.1 18q21.1 2013-05-01 2013-05-01 106480602 ENSG00000206944 NG_044635 +HGNC:47672 RNU6-709P RNA, U6 small nuclear 709, pseudogene pseudogene pseudogene Approved 10q25.3 10q25.3 2013-05-01 2013-05-01 106479879 ENSG00000253066 NG_042955 +HGNC:47673 RNU6-710P RNA, U6 small nuclear 710, pseudogene pseudogene pseudogene Approved 9q31.3 09q31.3 2013-05-01 2013-05-01 106479880 ENSG00000222356 NG_042964 +HGNC:47674 RNU6-711P RNA, U6 small nuclear 711, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-05-01 2013-05-01 106479881 ENSG00000253064 NG_042973 +HGNC:47675 RNU6-712P RNA, U6 small nuclear 712, pseudogene pseudogene pseudogene Approved 3p11.1 03p11.1 2013-05-01 2013-05-01 106481404 ENSG00000222490 NG_044913 +HGNC:47676 RNU6-713P RNA, U6 small nuclear 713, pseudogene pseudogene pseudogene Approved 12q12 12q12 2013-05-01 2013-05-01 106479882 ENSG00000207492 NG_042981 +HGNC:47677 RNU6-714P RNA, U6 small nuclear 714, pseudogene pseudogene pseudogene Approved 9q22.31 09q22.31 2013-05-01 2013-05-01 106480603 ENSG00000252772 NG_045925 +HGNC:47678 RNU6-715P RNA, U6 small nuclear 715, pseudogene pseudogene pseudogene Approved 2q22.3 02q22.3 2013-05-01 2013-05-01 106481405 ENSG00000202074 NG_044919 +HGNC:47679 RNU6-716P RNA, U6 small nuclear 716, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2013-05-01 106479883 ENSG00000202491 NG_042989 +HGNC:47680 RNU6-717P RNA, U6 small nuclear 717, pseudogene pseudogene pseudogene Approved 12q24.33 12q24.33 2013-05-01 2013-05-01 106479884 ENSG00000239190 NG_042998 +HGNC:47681 RNU6-718P RNA, U6 small nuclear 718, pseudogene pseudogene pseudogene Approved 5q23.1 05q23.1 2013-05-01 2013-05-01 106481406 ENSG00000251975 NG_044925 +HGNC:47682 RNU6-719P RNA, U6 small nuclear 719, pseudogene pseudogene pseudogene Approved 7p14.1 07p14.1 2013-05-01 2013-05-01 106481913 ENSG00000252480 NG_046025 +HGNC:47683 RNU6-720P RNA, U6 small nuclear 720, pseudogene pseudogene pseudogene Approved 3q25.1 03q25.1 2013-05-01 2013-05-01 106479885 ENSG00000252172 NG_043008 +HGNC:47684 RNU6-721P RNA, U6 small nuclear 721, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 2013-05-01 2013-05-01 106481774 ENSG00000222087 NG_045580 +HGNC:47685 RNU6-722P RNA, U6 small nuclear 722, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 2013-05-01 2013-05-01 106481407 ENSG00000223309 NG_044935 +HGNC:47686 RNU6-723P RNA, U6 small nuclear 723, pseudogene pseudogene pseudogene Approved 1p33 01p33 2013-05-01 2013-05-01 106479886 ENSG00000206700 NG_043016 +HGNC:47687 RNU6-724P RNA, U6 small nuclear 724, pseudogene pseudogene pseudogene Approved 5q13.2 05q13.2 2013-05-01 2013-05-01 106479887 ENSG00000212260 NG_043026 +HGNC:47688 RNU6-725P RNA, U6 small nuclear 725, pseudogene pseudogene pseudogene Approved 1q43 01q43 2013-05-01 2013-05-01 106481408 ENSG00000252371 NG_045213 +HGNC:47689 RNU6-726P RNA, U6 small nuclear 726, pseudogene pseudogene pseudogene Approved 3q22.1 03q22.1 2013-05-01 2013-05-01 106480604 ENSG00000201550 NG_044648 +HGNC:47690 RNU6-727P RNA, U6 small nuclear 727, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 2013-05-01 2013-05-01 106481409 ENSG00000200462 NG_042913 +HGNC:47691 RNU6-728P RNA, U6 small nuclear 728, pseudogene pseudogene pseudogene Approved 10q26.13 10q26.13 2013-05-01 2013-05-01 106479888 ENSG00000202245 NG_043033 +HGNC:47692 RNU6-729P RNA, U6 small nuclear 729, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2013-05-01 2013-05-01 106481410 ENSG00000207128 NG_042918 +HGNC:47693 RNU6-730P RNA, U6 small nuclear 730, pseudogene pseudogene pseudogene Approved 6q27 06q27 2013-05-01 2013-05-01 106479889 ENSG00000206681 NG_043044 +HGNC:47694 RNU6-731P RNA, U6 small nuclear 731, pseudogene pseudogene pseudogene Approved 1p36.31 01p36.31 2013-05-01 2013-05-01 106481411 ENSG00000253022 NG_042928 +HGNC:47695 RNU6-732P RNA, U6 small nuclear 732, pseudogene pseudogene pseudogene Approved 5q32 05q32 2013-05-01 2013-05-01 106479890 ENSG00000251842 NG_045293 +HGNC:47696 RNU6-733P RNA, U6 small nuclear 733, pseudogene pseudogene pseudogene Approved 4q25 04q25 2013-05-01 2013-05-01 106479891 ENSG00000222691 NG_045297 +HGNC:47697 RNU6-734P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47698 RNU6-735P RNA, U6 small nuclear 735, pseudogene pseudogene pseudogene Approved 12q22 12q22 2013-05-01 2013-05-01 106481412 ENSG00000222544 NG_042936 +HGNC:47699 RNU6-736P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47700 RNU6-737P RNA, U6 small nuclear 737, pseudogene pseudogene pseudogene Approved 18q21.31 18q21.31 2013-05-01 2013-05-01 106481914 ENSG00000202240 NG_044897 +HGNC:47701 RNU6-738P RNA, U6 small nuclear 738, pseudogene pseudogene pseudogene Approved 5p14.1 05p14.1 2013-05-01 2013-05-01 106479892 ENSG00000207261 NG_043069 +HGNC:47702 RNU6-739P RNA, U6 small nuclear 739, pseudogene pseudogene pseudogene Approved 3p14.1 03p14.1 2013-05-01 2013-05-01 106481413 ENSG00000212340 NG_042944 +HGNC:47703 RNU6-740P RNA, U6 small nuclear 740, pseudogene pseudogene pseudogene Approved 10q23.31 10q23.31 2013-05-01 2013-05-01 106479893 ENSG00000201604 NG_045307 +HGNC:47704 RNU6-741P RNA, U6 small nuclear 741, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 2013-05-01 2013-05-01 106479894 ENSG00000206616 NG_043085 +HGNC:47705 RNU6-742P RNA, U6 small nuclear 742, pseudogene pseudogene pseudogene Approved 18q21.31 18q21.31 2013-05-01 2013-05-01 106481414 ENSG00000202159 NG_042951 +HGNC:47706 RNU6-743P RNA, U6 small nuclear 743, pseudogene pseudogene pseudogene Approved 20q13.11 20q13.11 2013-05-01 2013-05-01 106480605 ENSG00000201021 NG_044655 +HGNC:47707 RNU6-744P RNA, U6 small nuclear 744, pseudogene pseudogene pseudogene Approved 2q14.1 02q14.1 2013-05-01 2013-05-01 106479895 ENSG00000202427 NG_045018 +HGNC:47708 RNU6-745P RNA, U6 small nuclear 745, pseudogene pseudogene pseudogene Approved 15q23 15q23 2013-05-01 2013-05-01 106481415 ENSG00000200216 NG_042960 +HGNC:47709 RNU6-746P RNA, U6 small nuclear 746, pseudogene pseudogene pseudogene Approved 4q12 04q12 2013-05-01 2013-05-01 106479896 ENSG00000206839 NG_043102 +HGNC:47710 RNU6-747P RNA, U6 small nuclear 747, pseudogene pseudogene pseudogene Approved 1q43 01q43 2013-05-01 2013-05-01 106480399 ENSG00000212230 NG_045286 +HGNC:47711 RNU6-748P RNA, U6 small nuclear 748, pseudogene pseudogene pseudogene Approved 8q22.2 08q22.2 2013-05-01 2013-05-01 106481416 ENSG00000207378 NG_045267 +HGNC:47712 RNU6-749P RNA, U6 small nuclear 749, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 2013-05-01 2013-05-01 106480606 ENSG00000238489 NG_045936 +HGNC:47713 RNU6-750P RNA, U6 small nuclear 750, pseudogene pseudogene pseudogene Approved 1p21.2 01p21.2 2013-05-01 2013-05-01 106479897 ENSG00000212248 NG_045318 +HGNC:47714 RNU6-751P RNA, U6 small nuclear 751, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106479898 ENSG00000252191 NG_043120 +HGNC:47715 RNU6-752P RNA, U6 small nuclear 752, pseudogene pseudogene pseudogene Approved 5q23.2 05q23.2 2013-05-01 2013-05-01 106481417 ENSG00000252185 NG_042979 +HGNC:47716 RNU6-753P RNA, U6 small nuclear 753, pseudogene pseudogene pseudogene Approved 1p34.3 01p34.3 2013-05-01 2013-05-01 106479899 ENSG00000200796 NG_043128 +HGNC:47717 RNU6-754P RNA, U6 small nuclear 754, pseudogene pseudogene pseudogene Approved 6p21.1 06p21.1 2013-05-01 2013-05-01 106481418 ENSG00000212468 NG_042985 +HGNC:47718 RNU6-755P RNA, U6 small nuclear 755, pseudogene pseudogene pseudogene Approved 1q23.3 01q23.3 2013-05-01 2013-05-01 106481915 ENSG00000201270 NG_044907 +HGNC:47719 RNU6-756P RNA, U6 small nuclear 756, pseudogene pseudogene pseudogene Approved 8q24.13 08q24.13 2013-05-01 2013-05-01 106479900 ENSG00000206724 NG_045330 +HGNC:47720 RNU6-757P RNA, U6 small nuclear 757, pseudogene pseudogene pseudogene Approved 5q31.1 05q31.1 2013-05-01 2013-05-01 106479901 ENSG00000222266 NG_045334 +HGNC:47721 RNU6-758P RNA, U6 small nuclear 758, pseudogene pseudogene pseudogene Approved 16q23.1 16q23.1 2013-05-01 2013-05-01 106481419 ENSG00000252101 NG_042993 +HGNC:47722 RNU6-759P RNA, U6 small nuclear 759, pseudogene pseudogene pseudogene Approved 20q11.22 20q11.22 2013-05-01 2013-05-01 106479902 ENSG00000252549 NG_045023 +HGNC:47723 RNU6-760P RNA, U6 small nuclear 760, pseudogene pseudogene pseudogene Approved 5p13.3 05p13.3 2013-05-01 2013-05-01 106481420 ENSG00000251887 NG_045279 +HGNC:47724 RNU6-761P RNA, U6 small nuclear 761, pseudogene pseudogene pseudogene Approved 6p21.1 06p21.1 2013-05-01 2013-05-01 106480607 ENSG00000206875 NG_045941 +HGNC:47725 RNU6-762P RNA, U6 small nuclear 762, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 2013-05-01 2013-05-01 106479903 ENSG00000252916 NG_045343 +HGNC:47726 RNU6-763P RNA, U6 small nuclear 763, pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 2013-05-01 2013-05-01 106481421 ENSG00000212167 NG_043011 +HGNC:47727 RNU6-764P RNA, U6 small nuclear 764, pseudogene pseudogene pseudogene Approved Xq28 Xq28 2013-05-01 2013-05-01 106479904 ENSG00000252205 NG_045346 +HGNC:47728 RNU6-765P RNA, U6 small nuclear 765, pseudogene pseudogene pseudogene Approved 9p13.1 09p13.1 2013-05-01 2013-05-01 106479905 ENSG00000252725 NG_043174 +HGNC:47729 RNU6-766P RNA, U6 small nuclear 766, pseudogene pseudogene pseudogene Approved 2q24.3 02q24.3 2013-05-01 2013-05-01 106481422 ENSG00000199348 NG_043020 +HGNC:47730 RNU6-767P RNA, U6 small nuclear 767, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2013-05-01 106481916 ENSG00000206859 NG_046034 +HGNC:47731 RNU6-768P RNA, U6 small nuclear 768, pseudogene pseudogene pseudogene Approved 12q23.1 12q23.1 2013-05-01 2013-05-01 106481775 ENSG00000207414 NG_045584 +HGNC:47732 RNU6-769P RNA, U6 small nuclear 769, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 2013-05-01 2013-05-01 106479906 ENSG00000207136 NG_045354 +HGNC:47733 RNU6-770P RNA, U6 small nuclear 770, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106481423 ENSG00000200799 NG_045289 +HGNC:47734 RNU6-771P RNA, U6 small nuclear 771, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 RNU6-1185P RNA, U6 small nuclear 1185, pseudogene 2013-05-01 2016-02-10 106479907 ENSG00000207511 NG_043193 +HGNC:47735 RNU6-772P RNA, U6 small nuclear 772, pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 2013-05-01 2013-05-01 106479908 ENSG00000251851 NG_043201 +HGNC:47736 RNU6-773P RNA, U6 small nuclear 773, pseudogene pseudogene pseudogene Approved 1q24.3 01q24.3 2013-05-01 2013-05-01 106481424 ENSG00000201126 NG_043038 +HGNC:47737 RNU6-774P RNA, U6 small nuclear 774, pseudogene pseudogene pseudogene Approved 4q21.23 04q21.23 2013-05-01 2013-05-01 106481425 ENSG00000200108 NG_043048 +HGNC:47738 RNU6-775P RNA, U6 small nuclear 775, pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 2013-05-01 2013-05-01 106479909 ENSG00000238619 NG_045030 +HGNC:47739 RNU6-776P RNA, U6 small nuclear 776, pseudogene pseudogene pseudogene Approved 1p36.12 01p36.12 2013-05-01 2013-05-01 106480608 ENSG00000201273 NG_045947 +HGNC:47740 RNU6-777P RNA, U6 small nuclear 777, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 2013-05-01 2013-05-01 106481426 ENSG00000201135 NG_043057 +HGNC:47741 RNU6-778P RNA, U6 small nuclear 778, pseudogene pseudogene pseudogene Approved 1q32.1 01q32.1 2013-05-01 2013-05-01 106479910 ENSG00000200139 NG_043219 +HGNC:47742 RNU6-779P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47743 RNU6-780P RNA, U6 small nuclear 780, pseudogene pseudogene pseudogene Approved 10q23.2 10q23.2 2013-05-01 2013-05-01 106481427 ENSG00000212332 NG_043064 +HGNC:47744 RNU6-781P RNA, U6 small nuclear 781, pseudogene pseudogene pseudogene Approved 12p13.31 12p13.31 2013-05-01 2013-05-01 106479911 ENSG00000252186 NG_043230 +HGNC:47745 RNU6-782P RNA, U6 small nuclear 782, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 2013-05-01 2013-05-01 106481917 ENSG00000252661 NG_046040 +HGNC:47746 RNU6-783P RNA, U6 small nuclear 783, pseudogene pseudogene pseudogene Approved 11p14.3 11p14.3 2013-05-01 2013-05-01 106479912 ENSG00000252519 NG_043239 +HGNC:47747 RNU6-784P RNA, U6 small nuclear 784, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 2013-05-01 2013-05-01 106481428 ENSG00000207058 NG_043071 +HGNC:47748 RNU6-785P RNA, U6 small nuclear 785, pseudogene pseudogene pseudogene Approved 9q34.3 09q34.3 2013-05-01 2013-05-01 106479913 ENSG00000223256 NG_043250 +HGNC:47749 RNU6-786P RNA, U6 small nuclear 786, pseudogene pseudogene pseudogene Approved 6q25.3 06q25.3 2013-05-01 2013-05-01 106481429 ENSG00000252658 NG_045309 +HGNC:47750 RNU6-787P RNA, U6 small nuclear 787, pseudogene pseudogene pseudogene Approved 3p14.1 03p14.1 2013-05-01 2013-05-01 106479914 ENSG00000206759 NG_043259 +HGNC:47751 RNU6-788P RNA, U6 small nuclear 788, pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 2013-05-01 2013-05-01 106480609 ENSG00000212269 NG_044684 +HGNC:47752 RNU6-789P RNA, U6 small nuclear 789, pseudogene pseudogene pseudogene Approved 3q22.3 03q22.3 2013-05-01 2013-05-01 106479915 ENSG00000252914 NG_045379 +HGNC:47753 RNU6-790P RNA, U6 small nuclear 790, pseudogene pseudogene pseudogene Approved 14q32.31 14q32.31 2013-05-01 2013-05-01 106481430 ENSG00000207208 NG_043090 +HGNC:47754 RNU6-791P RNA, U6 small nuclear 791, pseudogene pseudogene pseudogene Approved 1q41 01q41 2013-05-01 2013-05-01 106479916 ENSG00000222399 NG_045382 +HGNC:47755 RNU6-792P RNA, U6 small nuclear 792, pseudogene pseudogene pseudogene Approved 1p13.2 01p13.2 2013-05-01 2013-05-01 106481431 ENSG00000200360 NG_043098 +HGNC:47756 RNU6-793P RNA, U6 small nuclear 793, pseudogene pseudogene pseudogene Approved 6p23 06p23 2013-05-01 2013-05-01 106479917 ENSG00000206960 NG_043289 +HGNC:47757 RNU6-794P RNA, U6 small nuclear 794, pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 2013-05-01 2013-05-01 106480400 ENSG00000253070 NG_043035 +HGNC:47758 RNU6-795P RNA, U6 small nuclear 795, pseudogene pseudogene pseudogene Approved 10p11.1 10p11.1 2013-05-01 2013-05-01 106480610 ENSG00000252132 NG_044692 +HGNC:47759 RNU6-796P RNA, U6 small nuclear 796, pseudogene pseudogene pseudogene Approved 15q25.3 15q25.3 2013-05-01 2013-05-01 106481432 ENSG00000212388 NG_043107 +HGNC:47760 RNU6-797P RNA, U6 small nuclear 797, pseudogene pseudogene pseudogene Approved 7q34 07q34 2013-05-01 2013-05-01 106479918 ENSG00000199971 NG_043296 +HGNC:47761 RNU6-798P RNA, U6 small nuclear 798, pseudogene pseudogene pseudogene Approved 9q22.33 09q22.33 2013-05-01 2013-05-01 106479919 ENSG00000252721 NG_043303 +HGNC:47762 RNU6-799P RNA, U6 small nuclear 799, pseudogene pseudogene pseudogene Approved 17p12 17p12 2013-05-01 2013-05-01 107105254 ENSG00000200437 NG_046572 +HGNC:47763 RNU6-800P RNA, U6 small nuclear 800, pseudogene pseudogene pseudogene Approved Xp22.2 Xp22.2 2013-05-01 2013-05-01 106481433 ENSG00000207202 NG_043117 +HGNC:47764 RNU6-801P RNA, U6 small nuclear 801, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106479920 ENSG00000200957 NG_043312 +HGNC:47765 RNU6-802P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47766 RNU6-803P RNA, U6 small nuclear 803, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106481434 ENSG00000251843 NG_043124 +HGNC:47767 RNU6-804P RNA, U6 small nuclear 804, pseudogene pseudogene pseudogene Approved 5q14.3 05q14.3 2013-05-01 2013-05-01 106479921 ENSG00000207013 NG_043319 +HGNC:47768 RNU6-805P RNA, U6 small nuclear 805, pseudogene pseudogene pseudogene Approved 10q22.1 10q22.1 2013-05-01 2013-05-01 106479922 ENSG00000202513 NG_043326 +HGNC:47769 RNU6-806P RNA, U6 small nuclear 806, pseudogene pseudogene pseudogene Approved 5q12.1 05q12.1 2013-05-01 2013-05-01 106481435 ENSG00000202017 NG_045328 +HGNC:47770 RNU6-807P RNA, U6 small nuclear 807, pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 2013-05-01 2013-05-01 106479923 ENSG00000252614 NG_045405 +HGNC:47771 RNU6-808P RNA, U6 small nuclear 808, pseudogene pseudogene pseudogene Approved 12q22 12q22 2013-05-01 2013-05-01 106481436 ENSG00000212535 NG_045331 +HGNC:47772 RNU6-809P RNA, U6 small nuclear 809, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-01 2013-05-01 106479924 ENSG00000207190 NG_043344 +HGNC:47773 RNU6-810P RNA, U6 small nuclear 810, pseudogene pseudogene pseudogene Approved 22q12.1 22q12.1 2013-05-01 2013-05-01 106481437 ENSG00000200871 NG_045335 +HGNC:47774 RNU6-811P RNA, U6 small nuclear 811, pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 2013-05-01 2013-05-01 106479925 ENSG00000206796 NG_045414 +HGNC:47775 RNU6-812P RNA, U6 small nuclear 812, pseudogene pseudogene pseudogene Approved 2p12 02p12 2013-05-01 2013-05-01 106479926 ENSG00000200048 NG_043360 +HGNC:47776 RNU6-813P RNA, U6 small nuclear 813, pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 2013-05-01 2013-05-01 106481438 ENSG00000207422 NG_043155 +HGNC:47777 RNU6-814P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47778 RNU6-815P RNA, U6 small nuclear 815, pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 2013-05-01 2013-05-01 106480611 ENSG00000206807 NG_044703 +HGNC:47779 RNU6-816P RNA, U6 small nuclear 816, pseudogene pseudogene pseudogene Approved 22q11.1 22q11.1 2013-05-01 2013-05-01 106480401 ENSG00000212216 NG_045291 +HGNC:47780 RNU6-817P RNA, U6 small nuclear 817, pseudogene pseudogene pseudogene Approved 1p13.1 01p13.1 2013-05-01 2013-05-01 106479927 ENSG00000212385 NG_045419 +HGNC:47781 RNU6-818P RNA, U6 small nuclear 818, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 2013-05-01 2013-05-01 106481439 ENSG00000201707 NG_045025 +HGNC:47782 RNU6-819P RNA, U6 small nuclear 819, pseudogene pseudogene pseudogene Approved 8q11.1 08q11.1 2013-05-01 2013-05-01 106479928 ENSG00000200986 NG_043374 +HGNC:47783 RNU6-820P RNA, U6 small nuclear 820, pseudogene pseudogene pseudogene Approved 9q21.11 09q21.11 2013-05-01 2013-05-01 106479929 ENSG00000207000 NG_043381 +HGNC:47784 RNU6-821P RNA, U6 small nuclear 821, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-01 2013-05-01 106481440 ENSG00000212297 NG_045349 +HGNC:47785 RNU6-822P RNA, U6 small nuclear 822, pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 2013-05-01 2013-05-01 106479930 ENSG00000199577 NG_043390 +HGNC:47786 RNU6-823P RNA, U6 small nuclear 823, pseudogene pseudogene pseudogene Approved 3q21.3 03q21.3 2013-05-01 2013-05-01 106481441 ENSG00000212344 NG_043179 +HGNC:47787 RNU6-824P RNA, U6 small nuclear 824, pseudogene pseudogene pseudogene Approved 6q25.2 06q25.2 2013-05-01 2013-05-01 106480612 ENSG00000200594 NG_044713 +HGNC:47789 RNU6-826P RNA, U6 small nuclear 826, pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 2013-05-01 2013-05-01 106479931 ENSG00000252636 NG_045435 +HGNC:47790 RNU6-827P RNA, U6 small nuclear 827, pseudogene pseudogene pseudogene Approved 2p12 02p12 2013-05-01 2013-05-01 106481442 ENSG00000202423 NG_043187 +HGNC:47791 RNU6-828P RNA, U6 small nuclear 828, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 2013-05-01 2013-05-01 106479932 ENSG00000201746 NG_045439 +HGNC:47792 RNU6-829P RNA, U6 small nuclear 829, pseudogene pseudogene pseudogene Approved 9q22.31 09q22.31 2013-05-01 2013-05-01 106479933 ENSG00000200570 NG_043414 +HGNC:47793 RNU6-830P RNA, U6 small nuclear 830, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 2013-05-01 2013-05-01 106480613 ENSG00000252162 NG_044720 +HGNC:47794 RNU6-831P RNA, U6 small nuclear 831, pseudogene pseudogene pseudogene Approved 18p11.31 18p11.31 2013-05-01 2013-05-01 106481443 ENSG00000207278 NG_045357 +HGNC:47795 RNU6-832P RNA, U6 small nuclear 832, pseudogene pseudogene pseudogene Approved 7q11.22 07q11.22 2013-05-01 2013-05-01 106479934 ENSG00000200189 NG_043424 +HGNC:47796 RNU6-833P RNA, U6 small nuclear 833, pseudogene pseudogene pseudogene Approved 10q22.2 10q22.2 2013-05-01 2013-05-01 106481444 ENSG00000200356 NG_043206 +HGNC:47797 RNU6-834P RNA, U6 small nuclear 834, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 2013-05-01 2013-05-01 106479935 ENSG00000199237 NG_043432 +HGNC:47798 RNU6-835P RNA, U6 small nuclear 835, pseudogene pseudogene pseudogene Approved 14q31.3 14q31.3 2013-05-01 2013-05-01 106481445 ENSG00000252783 NG_043213 +HGNC:47799 RNU6-836P RNA, U6 small nuclear 836, pseudogene pseudogene pseudogene Approved 4p14 04p14 2013-05-01 2013-05-01 106481918 ENSG00000199790 NG_044927 +HGNC:47800 RNU6-837P RNA, U6 small nuclear 837, pseudogene pseudogene pseudogene Approved 12p12.3 12p12.3 2013-05-01 2013-05-01 106479936 ENSG00000212358 NG_043439 +HGNC:47801 RNU6-838P RNA, U6 small nuclear 838, pseudogene pseudogene pseudogene Approved 4p12 04p12 2013-05-01 2013-05-01 106479937 ENSG00000200269 NG_045453 +HGNC:47802 RNU6-839P RNA, U6 small nuclear 839, pseudogene pseudogene pseudogene Approved 10q25.1 10q25.1 2013-05-01 2013-05-01 106481446 ENSG00000200217 NG_043223 +HGNC:47803 RNU6-840P RNA, U6 small nuclear 840, pseudogene pseudogene pseudogene Approved 17q12 17q12 2013-05-01 2013-05-01 106479938 ENSG00000253084 NG_045052 +HGNC:47804 RNU6-841P RNA, U6 small nuclear 841, pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 2013-05-01 2013-05-01 106480699 ENSG00000206599 NG_045436 +HGNC:47805 RNU6-842P RNA, U6 small nuclear 842, pseudogene pseudogene pseudogene Approved 8p22 08p22 2013-05-01 2013-05-01 106481447 ENSG00000206996 NG_043235 +HGNC:47806 RNU6-843P RNA, U6 small nuclear 843, pseudogene pseudogene pseudogene Approved 2p24.3 02p24.3 2013-05-01 2013-05-01 106480614 ENSG00000207183 NG_044730 +HGNC:47807 RNU6-844P RNA, U6 small nuclear 844, pseudogene pseudogene pseudogene Approved 15q21.3 15q21.3 2013-05-01 2013-05-01 106479939 ENSG00000252984 NG_043462 +HGNC:47808 RNU6-845P RNA, U6 small nuclear 845, pseudogene pseudogene pseudogene Approved 16q11.2 16q11.2 2013-05-01 2013-05-01 106479940 ENSG00000199448 NG_045461 +HGNC:47809 RNU6-846P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47810 RNU6-847P RNA, U6 small nuclear 847, pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 2013-05-01 2013-05-01 106481448 ENSG00000223047 NG_043244 +HGNC:47811 RNU6-848P RNA, U6 small nuclear 848, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 2013-05-01 2013-05-01 106479941 ENSG00000251757 NG_045464 +HGNC:47812 RNU6-849P RNA, U6 small nuclear 849, pseudogene pseudogene pseudogene Approved 7q21.11 07q21.11 2013-05-01 2013-05-01 106481449 ENSG00000206818 NG_043255 +HGNC:47813 RNU6-850P RNA, U6 small nuclear 850, pseudogene pseudogene pseudogene Approved 6p21.33 06p21.33 RNU6-1030P RNA, U6 small nuclear 1030, pseudogene 2013-05-01 2016-02-10 106481919 ENSG00000252743 NG_044937 +HGNC:47814 RNU6-851P RNA, U6 small nuclear 851, pseudogene pseudogene pseudogene Approved 2p22.1 02p22.1 2013-05-01 2013-05-01 106479942 ENSG00000207295 NG_045061 +HGNC:47815 RNU6-852P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47816 RNU6-853P RNA, U6 small nuclear 853, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 2013-05-01 2013-05-01 106479943 ENSG00000201176 NG_045470 +HGNC:47817 RNU6-854P RNA, U6 small nuclear 854, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 2013-05-01 2013-05-01 106481450 ENSG00000200906 NG_043264 +HGNC:47818 RNU6-855P RNA, U6 small nuclear 855, pseudogene pseudogene pseudogene Approved 9q32 09q32 2013-05-01 2013-05-01 106479944 ENSG00000222327 NG_043496 +HGNC:47819 RNU6-856P RNA, U6 small nuclear 856, pseudogene pseudogene pseudogene Approved 3p21.1 03p21.1 2013-05-01 2013-05-01 106481451 ENSG00000252768 NG_045381 +HGNC:47820 RNU6-857P RNA, U6 small nuclear 857, pseudogene pseudogene pseudogene Approved 18q12.1 18q12.1 2013-05-01 2013-05-01 106480615 ENSG00000251702 NG_044739 +HGNC:47821 RNU6-858P RNA, U6 small nuclear 858, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-01 2013-05-01 106479945 ENSG00000199306 NG_043505 +HGNC:47822 RNU6-859P RNA, U6 small nuclear 859, pseudogene pseudogene pseudogene Approved 21q22.3 21q22.3 2013-05-01 2013-05-01 106481452 ENSG00000199598 NG_043283 +HGNC:47823 RNU6-860P RNA, U6 small nuclear 860, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-01 2013-05-01 106479946 ENSG00000222792 NG_043514 +HGNC:47824 RNU6-861P RNA, U6 small nuclear 861, pseudogene pseudogene pseudogene Approved 6q22.33 06q22.33 2013-05-01 2013-05-01 106479947 ENSG00000252554 NG_043523 +HGNC:47825 RNU6-862P RNA, U6 small nuclear 862, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2013-05-01 106481920 ENSG00000199674 NG_045236 +HGNC:47826 RNU6-863P RNA, U6 small nuclear 863, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 2013-05-01 2013-05-01 106481453 ENSG00000251798 NG_045035 +HGNC:47827 RNU6-864P RNA, U6 small nuclear 864, pseudogene pseudogene pseudogene Approved 14q12 14q12 2013-05-01 2013-05-01 106481776 ENSG00000252065 NG_043814 +HGNC:47828 RNU6-865P RNA, U6 small nuclear 865, pseudogene pseudogene pseudogene Approved 3q12.2 03q12.2 2013-05-01 2013-05-01 106479948 ENSG00000201642 NG_043531 +HGNC:47829 RNU6-866P RNA, U6 small nuclear 866, pseudogene pseudogene pseudogene Approved 17q12 17q12 2013-05-01 2015-02-05 106481454 ENSG00000274607 NG_045390 +HGNC:47830 RNU6-867P RNA, U6 small nuclear 867, pseudogene pseudogene pseudogene Approved Xq13.3 Xq13.3 2013-05-01 2013-05-01 106479949 ENSG00000201826 NG_043539 +HGNC:47831 RNU6-868P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-08 +HGNC:47832 RNU6-869P RNA, U6 small nuclear 869, pseudogene pseudogene pseudogene Approved 8q24.21 08q24.21 2013-05-01 2013-05-01 106480616 ENSG00000207138 NG_044746 +HGNC:47833 RNU6-870P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47834 RNU6-871P RNA, U6 small nuclear 871, pseudogene pseudogene pseudogene Approved 12q14.1 12q14.1 2013-05-01 2013-05-01 106479950 ENSG00000251931 NG_043548 +HGNC:47835 RNU6-872P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-08 +HGNC:47836 RNU6-873P RNA, U6 small nuclear 873, pseudogene pseudogene pseudogene Approved 3p11.2 03p11.2 2013-05-01 2013-05-01 106479951 ENSG00000200703 NG_043556 +HGNC:47837 RNU6-874P RNA, U6 small nuclear 874, pseudogene pseudogene pseudogene Approved 11q24.3 11q24.3 2013-05-01 2013-05-01 106479952 ENSG00000199260 NG_043566 +HGNC:47838 RNU6-875P RNA, U6 small nuclear 875, pseudogene pseudogene pseudogene Approved 8q24.13 08q24.13 2013-05-01 2013-05-01 106479953 ENSG00000252297 NG_043574 +HGNC:47839 RNU6-876P RNA, U6 small nuclear 876, pseudogene pseudogene pseudogene Approved 11q24.3 11q24.3 2013-05-01 2013-05-01 106481455 ENSG00000212597 NG_045394 +HGNC:47840 RNU6-877P RNA, U6 small nuclear 877, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 2013-05-01 2013-05-01 106480617 ENSG00000206595 NG_044755 +HGNC:47841 RNU6-878P RNA, U6 small nuclear 878, pseudogene pseudogene pseudogene Approved 11p15.5 11p15.5 2013-05-01 2013-05-01 106479954 ENSG00000207308 NG_043582 +HGNC:47842 RNU6-879P RNA, U6 small nuclear 879, pseudogene pseudogene pseudogene Approved 12q13.3 12q13.3 2013-05-01 2013-05-01 106481456 ENSG00000201198 NG_043315 +HGNC:47843 RNU6-880P RNA, U6 small nuclear 880, pseudogene pseudogene pseudogene Approved 1p34.2 01p34.2 2013-05-01 2013-05-01 106479955 ENSG00000207256 NG_043593 +HGNC:47844 RNU6-881P RNA, U6 small nuclear 881, pseudogene pseudogene pseudogene Approved 9q34.13 09q34.13 2013-05-01 2013-05-01 106479956 ENSG00000252622 NG_045503 +HGNC:47845 RNU6-882P RNA, U6 small nuclear 882, pseudogene pseudogene pseudogene Approved 3p25.3 03p25.3 2013-05-01 2013-05-01 106481457 ENSG00000212327 NG_045400 +HGNC:47846 RNU6-883P RNA, U6 small nuclear 883, pseudogene pseudogene pseudogene Approved 10q22.2 10q22.2 2013-05-01 2013-05-01 106481921 ENSG00000207327 NG_045240 +HGNC:47847 RNU6-884P RNA, U6 small nuclear 884, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106479957 ENSG00000200759 NG_043606 +HGNC:47848 RNU6-885P RNA, U6 small nuclear 885, pseudogene pseudogene pseudogene Approved 10q11.21 10q11.21 2013-05-01 2013-05-01 106481458 ENSG00000252416 NG_043331 +HGNC:47849 RNU6-886P RNA, U6 small nuclear 886, pseudogene pseudogene pseudogene Approved 14q21.1 14q21.1 2013-05-01 2013-05-01 106479958 ENSG00000207046 NG_043614 +HGNC:47850 RNU6-887P RNA, U6 small nuclear 887, pseudogene pseudogene pseudogene Approved 4p14 04p14 2013-05-01 2013-05-01 106481459 ENSG00000222592 NG_043340 +HGNC:47851 RNU6-888P RNA, U6 small nuclear 888, pseudogene pseudogene pseudogene Approved 5q31.2 05q31.2 2013-05-01 2013-05-01 106479959 ENSG00000199880 NG_045512 +HGNC:47852 RNU6-889P RNA, U6 small nuclear 889, pseudogene pseudogene pseudogene Approved 10p15.3 10p15.3 2013-05-01 2013-05-01 106480402 ENSG00000252998 NG_043054 +HGNC:47853 RNU6-890P RNA, U6 small nuclear 890, pseudogene pseudogene pseudogene Approved 6p21.1 06p21.1 2013-05-01 2013-05-01 106480618 ENSG00000206848 NG_045973 +HGNC:47854 RNU6-891P RNA, U6 small nuclear 891, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 2013-05-01 2013-05-01 106479960 ENSG00000207007 NG_045079 +HGNC:47855 RNU6-892P RNA, U6 small nuclear 892, pseudogene pseudogene pseudogene Approved 8p21.3 08p21.3 2013-05-01 2013-05-01 106481460 ENSG00000222267 NG_043347 +HGNC:47856 RNU6-893P RNA, U6 small nuclear 893, pseudogene pseudogene pseudogene Approved 11q23.1 11q23.1 2013-05-01 2013-05-01 106479961 ENSG00000238444 NG_043636 +HGNC:47857 RNU6-894P RNA, U6 small nuclear 894, pseudogene pseudogene pseudogene Approved Xp21.2 Xp21.2 2013-05-01 2013-05-01 106481461 ENSG00000252903 NG_043354 +HGNC:47858 RNU6-895P RNA, U6 small nuclear 895, pseudogene pseudogene pseudogene Approved 8p11.21 08p11.21 2013-05-01 2013-05-01 106479962 ENSG00000206852 NG_043641 +HGNC:47859 RNU6-896P RNA, U6 small nuclear 896, pseudogene pseudogene pseudogene Approved 6q25.2 06q25.2 2013-05-01 2013-05-01 106481922 ENSG00000199246 NG_042919 +HGNC:47860 RNU6-897P RNA, U6 small nuclear 897, pseudogene pseudogene pseudogene Approved 6q16.3 06q16.3 2013-05-01 2013-05-01 106479963 ENSG00000252944 NG_043650 +HGNC:47861 RNU6-898P RNA, U6 small nuclear 898, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 2013-05-01 2013-05-01 106481462 ENSG00000202497 NG_043364 +HGNC:47862 RNU6-899P RNA, U6 small nuclear 899, pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 2013-05-01 2013-05-01 106479964 ENSG00000200817 NG_043659 +HGNC:47863 RNU6-900P RNA, U6 small nuclear 900, pseudogene pseudogene pseudogene Approved 22q13.1 22q13.1 2013-05-01 2013-05-01 106481463 ENSG00000207227 NG_045423 +HGNC:47864 RNU6-901P RNA, U6 small nuclear 901, pseudogene pseudogene pseudogene Approved 3q25.2 03q25.2 2013-05-01 2013-05-01 106479965 ENSG00000207323 NG_043664 +HGNC:47865 RNU6-902P RNA, U6 small nuclear 902, pseudogene pseudogene pseudogene Approved 19q13.31 19q13.31 2013-05-01 2013-05-01 106480619 ENSG00000253021 NG_045196 +HGNC:47866 RNU6-903P RNA, U6 small nuclear 903, pseudogene pseudogene pseudogene Approved 18p11.22 18p11.22 2013-05-01 2013-05-01 106481464 ENSG00000212572 NG_043376 +HGNC:47867 RNU6-904P RNA, U6 small nuclear 904, pseudogene pseudogene pseudogene Approved 2q22.1 02q22.1 2013-05-01 2013-05-01 106479966 ENSG00000252015 NG_045082 +HGNC:47868 RNU6-905P RNA, U6 small nuclear 905, pseudogene pseudogene pseudogene Approved 3p25.1 03p25.1 2013-05-01 2013-05-01 106479967 ENSG00000207163 NG_045540 +HGNC:47869 RNU6-906P RNA, U6 small nuclear 906, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106481465 ENSG00000207431 NG_043386 +HGNC:47870 RNU6-907P RNA, U6 small nuclear 907, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 2013-05-01 2013-05-01 106480620 ENSG00000212226 NG_045198 +HGNC:47871 RNU6-908P RNA, U6 small nuclear 908, pseudogene pseudogene pseudogene Approved 10p11.23 10p11.23 2013-05-01 2013-05-01 106479968 ENSG00000222092 NG_043687 +HGNC:47872 RNU6-909P RNA, U6 small nuclear 909, pseudogene pseudogene pseudogene Approved 5p14.1 05p14.1 2013-05-01 2013-05-01 106481466 ENSG00000252867 NG_043394 +HGNC:47873 RNU6-910P RNA, U6 small nuclear 910, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-01 2013-05-01 106481777 ENSG00000212146 NG_043822 +HGNC:47874 RNU6-911P RNA, U6 small nuclear 911, pseudogene pseudogene pseudogene Approved 7q34 07q34 2013-05-01 2013-05-01 106479969 ENSG00000252332 NG_045084 +HGNC:47875 RNU6-912P RNA, U6 small nuclear 912, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 2013-05-01 2013-05-01 106479970 ENSG00000200670 NG_043701 +HGNC:47876 RNU6-913P RNA, U6 small nuclear 913, pseudogene pseudogene pseudogene Approved 5q12.1 05q12.1 2013-05-01 2013-05-01 106481467 ENSG00000212215 NG_045438 +HGNC:47877 RNU6-914P RNA, U6 small nuclear 914, pseudogene pseudogene pseudogene Approved 8q22.2 08q22.2 2013-05-01 2013-05-01 107063540 ENSG00000252558 NG_046358 +HGNC:47878 RNU6-915P RNA, U6 small nuclear 915, pseudogene pseudogene pseudogene Approved 2q32.3 02q32.3 2013-05-01 2013-05-01 106481923 ENSG00000201813 NG_045006 +HGNC:47879 RNU6-916P RNA, U6 small nuclear 916, pseudogene pseudogene pseudogene Approved 18p11.31 18p11.31 2013-05-01 2013-05-01 106481468 ENSG00000251897 NG_043409 +HGNC:47880 RNU6-917P RNA, U6 small nuclear 917, pseudogene pseudogene pseudogene Approved 20p13 20p13 2013-05-01 2013-05-01 106479971 ENSG00000252103 NG_043708 +HGNC:47881 RNU6-918P RNA, U6 small nuclear 918, pseudogene pseudogene pseudogene Approved 9q22.33 09q22.33 2013-05-01 2013-05-01 106481469 ENSG00000212521 NG_043419 +HGNC:47882 RNU6-919P RNA, U6 small nuclear 919, pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 2013-05-01 2013-05-01 106479972 ENSG00000252540 NG_043715 +HGNC:47883 RNU6-920P RNA, U6 small nuclear 920, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-05-01 2013-05-01 106481470 ENSG00000222858 NG_045445 +HGNC:47884 RNU6-921P RNA, U6 small nuclear 921, pseudogene pseudogene pseudogene Approved 14q24.1 14q24.1 2013-05-01 2013-05-01 106479973 ENSG00000207089 NG_043724 +HGNC:47885 RNU6-922P RNA, U6 small nuclear 922, pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 2013-05-01 2013-05-01 106479974 ENSG00000252562 NG_043732 +HGNC:47886 RNU6-923P RNA, U6 small nuclear 923, pseudogene pseudogene pseudogene Approved 5p13.2 05p13.2 2013-05-01 2013-05-01 106481471 ENSG00000201623 NG_045449 +HGNC:47887 RNU6-924P RNA, U6 small nuclear 924, pseudogene pseudogene pseudogene Approved 19q13.32 19q13.32 2013-05-01 2013-05-01 106480621 ENSG00000199796 NG_045981 +HGNC:47888 RNU6-925P RNA, U6 small nuclear 925, pseudogene pseudogene pseudogene Approved 8q21.3 08q21.3 2013-05-01 2013-05-01 106479975 ENSG00000207359 NG_043739 +HGNC:47889 RNU6-926P RNA, U6 small nuclear 926, pseudogene pseudogene pseudogene Approved 21q21.3 21q21.3 2013-05-01 2013-05-01 106481472 ENSG00000206802 NG_043442 +HGNC:47890 RNU6-927P RNA, U6 small nuclear 927, pseudogene pseudogene pseudogene Approved 12q24.31 12q24.31 2013-05-01 2013-05-01 106479976 ENSG00000252008 NG_043746 +HGNC:47891 RNU6-928P RNA, U6 small nuclear 928, pseudogene pseudogene pseudogene Approved 17q24.2 17q24.2 2013-05-01 2013-05-01 106479977 ENSG00000252685 NG_045564 +HGNC:47892 RNU6-929P RNA, U6 small nuclear 929, pseudogene pseudogene pseudogene Approved 20q13.31 20q13.31 2013-05-01 2013-05-01 106481473 ENSG00000207158 NG_043452 +HGNC:47893 RNU6-930P RNA, U6 small nuclear 930, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 RNU6-1173P RNA, U6 small nuclear 1173, pseudogene 2013-05-01 2016-02-10 106480622 ENSG00000212240 NG_045985 +HGNC:47894 RNU6-931P RNA, U6 small nuclear 931, pseudogene pseudogene pseudogene Approved 4p12 04p12 2013-05-01 2013-05-01 106479978 ENSG00000200720 NG_043761 +HGNC:47895 RNU6-932P RNA, U6 small nuclear 932, pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 2013-05-01 2013-05-01 106481474 ENSG00000212410 NG_045054 +HGNC:47896 RNU6-933P RNA, U6 small nuclear 933, pseudogene pseudogene pseudogene Approved 11q12.2 11q12.2 2013-05-01 2013-05-01 106479979 ENSG00000207153 NG_043766 +HGNC:47897 RNU6-934P RNA, U6 small nuclear 934, pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 2013-05-01 2013-05-01 106481475 ENSG00000202024 NG_045460 +HGNC:47898 RNU6-935P RNA, U6 small nuclear 935, pseudogene pseudogene pseudogene Approved Xp11.22 Xp11.22 2013-05-01 2013-05-01 106480403 ENSG00000222303 NG_043062 +HGNC:47899 RNU6-936P RNA, U6 small nuclear 936, pseudogene pseudogene pseudogene Approved 2p23.3 02p23.3 2013-05-01 2013-05-01 106481924 ENSG00000206732 NG_045252 +HGNC:47900 RNU6-937P RNA, U6 small nuclear 937, pseudogene pseudogene pseudogene Approved 20q11.23 20q11.23 2013-05-01 2013-05-01 106479980 ENSG00000207053 NG_043776 +HGNC:47901 RNU6-938P RNA, U6 small nuclear 938, pseudogene pseudogene pseudogene Approved 17q25.1 17q25.1 2013-05-01 2013-05-01 106479981 ENSG00000223217 NG_045576 +HGNC:47902 RNU6-939P RNA, U6 small nuclear 939, pseudogene pseudogene pseudogene Approved 2p22.2 02p22.2 2013-05-01 2013-05-01 106481476 ENSG00000207364 NG_045058 +HGNC:47903 RNU6-940P RNA, U6 small nuclear 940, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 2013-05-01 2013-05-01 106479982 ENSG00000200303 NG_043792 +HGNC:47904 RNU6-941P RNA, U6 small nuclear 941, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2013-05-01 2013-05-01 107063612 ENSG00000252155 NG_046365 +HGNC:47905 RNU6-942P RNA, U6 small nuclear 942, pseudogene pseudogene pseudogene Approved 2p23.3 02p23.3 2013-05-01 2013-05-01 106481477 ENSG00000199872 NG_045060 +HGNC:47906 RNU6-943P RNA, U6 small nuclear 943, pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 2013-05-01 2013-05-01 106480623 ENSG00000252769 NG_045988 +HGNC:47907 RNU6-944P RNA, U6 small nuclear 944, pseudogene pseudogene pseudogene Approved 16p12.3 16p12.3 2013-05-01 2013-05-01 106479983 ENSG00000200893 NG_045583 +HGNC:47908 RNU6-945P RNA, U6 small nuclear 945, pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 2013-05-01 2013-05-01 106479984 ENSG00000206674 NG_043809 +HGNC:47909 RNU6-946P RNA, U6 small nuclear 946, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-05-01 2013-05-01 106481478 ENSG00000206605 NG_045468 +HGNC:47910 RNU6-947P RNA, U6 small nuclear 947, pseudogene pseudogene pseudogene Approved 1q44 01q44 2013-05-01 2013-05-01 106479985 ENSG00000252073 NG_043818 +HGNC:47911 RNU6-948P RNA, U6 small nuclear 948, pseudogene pseudogene pseudogene Approved 4q27 04q27 2013-05-01 2013-05-01 106481479 ENSG00000252183 NG_043493 +HGNC:47912 RNU6-949P RNA, U6 small nuclear 949, pseudogene pseudogene pseudogene Approved 1p35.3 01p35.3 2013-05-01 2013-05-01 106481925 ENSG00000206767 NG_042945 +HGNC:47913 RNU6-950P RNA, U6 small nuclear 950, pseudogene pseudogene pseudogene Approved 12q13.13 12q13.13 2013-05-01 2013-05-01 106479986 ENSG00000207381 NG_043826 +HGNC:47914 RNU6-951P RNA, U6 small nuclear 951, pseudogene pseudogene pseudogene Approved 2p22.2 02p22.2 2013-05-01 2013-05-01 106481480 ENSG00000199603 NG_043501 +HGNC:47915 RNU6-952P RNA, U6 small nuclear 952, pseudogene pseudogene pseudogene Approved 11q22.2 11q22.2 2013-05-01 2013-05-01 106479987 ENSG00000212466 NG_043833 +HGNC:47916 RNU6-953P RNA, U6 small nuclear 953, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 2013-05-01 2013-05-01 106479988 ENSG00000238941 NG_043842 +HGNC:47917 RNU6-954P RNA, U6 small nuclear 954, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 2013-05-01 2013-05-01 106481481 ENSG00000223287 NG_045477 +HGNC:47918 RNU6-955P RNA, U6 small nuclear 955, pseudogene pseudogene pseudogene Approved 17p13.2 17p13.2 2013-05-01 2013-05-01 106480624 ENSG00000222429 NG_044813 +HGNC:47919 RNU6-956P RNA, U6 small nuclear 956, pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 2013-05-01 2013-05-01 106480404 ENSG00000239030 NG_045015 +HGNC:47920 RNU6-957P RNA, U6 small nuclear 957, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106479989 ENSG00000200522 NG_045600 +HGNC:47921 RNU6-958P RNA, U6 small nuclear 958, pseudogene pseudogene pseudogene Approved 2p21 02p21 2013-05-01 2013-05-01 106481482 ENSG00000252804 NG_045065 +HGNC:47922 RNU6-959P RNA, U6 small nuclear 959, pseudogene pseudogene pseudogene Approved 2q32.3 02q32.3 2013-05-01 2013-05-01 106479990 ENSG00000207402 NG_045099 +HGNC:47923 RNU6-960P RNA, U6 small nuclear 960, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106479991 ENSG00000200926 NG_043859 +HGNC:47924 RNU6-961P RNA, U6 small nuclear 961, pseudogene pseudogene pseudogene Approved 2p24.1 02p24.1 2013-05-01 2013-05-01 106481483 ENSG00000200763 NG_043526 +HGNC:47925 RNU6-962P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:47926 RNU6-963P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:47927 RNU6-964P RNA, U6 small nuclear 964, pseudogene pseudogene pseudogene Approved 2q36.3 02q36.3 2013-05-01 2013-05-01 106479992 ENSG00000252333 NG_045101 +HGNC:47928 RNU6-965P RNA, U6 small nuclear 965, pseudogene pseudogene pseudogene Approved 1p21.2 01p21.2 2013-05-01 2013-05-01 106481484 ENSG00000252530 NG_043535 +HGNC:47929 RNU6-966P RNA, U6 small nuclear 966, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 2013-05-01 2013-05-01 106480625 ENSG00000252288 NG_045994 +HGNC:47930 RNU6-967P RNA, U6 small nuclear 967, pseudogene pseudogene pseudogene Approved 19q12 19q12 2013-05-01 2013-05-01 106479993 ENSG00000201894 NG_043872 +HGNC:47931 RNU6-968P RNA, U6 small nuclear 968, pseudogene pseudogene pseudogene Approved 1q42.3 01q42.3 2013-05-01 2013-05-01 106481485 ENSG00000206803 NG_043544 +HGNC:47932 RNU6-969P RNA, U6 small nuclear 969, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 2013-05-01 2013-05-01 106479994 ENSG00000206627 NG_043880 +HGNC:47933 RNU6-970P RNA, U6 small nuclear 970, pseudogene pseudogene pseudogene Approved 1p22.1 01p22.1 2013-05-01 2013-05-01 106481486 ENSG00000252121 NG_043552 +HGNC:47934 RNU6-971P RNA, U6 small nuclear 971, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 2013-05-01 2013-05-01 106481926 ENSG00000252729 NG_042953 +HGNC:47935 RNU6-972P RNA, U6 small nuclear 972, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2013-05-01 2013-05-01 106479995 ENSG00000212510 NG_043887 +HGNC:47936 RNU6-973P RNA, U6 small nuclear 973, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 2013-05-01 2013-05-01 106479996 ENSG00000201560 NG_045107 +HGNC:47937 RNU6-974P RNA, U6 small nuclear 974, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 2013-05-01 2013-05-01 106481487 ENSG00000206826 NG_043560 +HGNC:47938 RNU6-975P RNA, U6 small nuclear 975, pseudogene pseudogene pseudogene Approved 6q13 06q13 2013-05-01 2013-05-01 106479997 ENSG00000207023 NG_045623 +HGNC:47939 RNU6-976P RNA, U6 small nuclear 976, pseudogene pseudogene pseudogene Approved 14q31.3 14q31.3 2013-05-01 2013-05-01 106481488 ENSG00000251895 NG_043570 +HGNC:47940 RNU6-977P RNA, U6 small nuclear 977, pseudogene pseudogene pseudogene Approved 12q21.31 12q21.31 2013-05-01 2013-05-01 106480626 ENSG00000252220 NG_046000 +HGNC:47941 RNU6-978P RNA, U6 small nuclear 978, pseudogene pseudogene pseudogene Approved 15q11.1 15q11.1 2013-05-01 2013-05-01 106479998 ENSG00000201241 NG_045626 +HGNC:47942 RNU6-979P RNA, U6 small nuclear 979, pseudogene pseudogene pseudogene Approved 7p15.1 07p15.1 2013-05-01 2013-05-01 106479999 ENSG00000206623 NG_045632 +HGNC:47943 RNU6-980P RNA, U6 small nuclear 980, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106481489 ENSG00000252734 NG_043578 +HGNC:47944 RNU6-981P RNA, U6 small nuclear 981, pseudogene pseudogene pseudogene Approved 17q12 17q12 2013-05-01 2013-05-01 106480000 ENSG00000223091 NG_043919 +HGNC:47945 RNU6-982P RNA, U6 small nuclear 982, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106481979 ENSG00000252025 NG_043402 +HGNC:47946 RNU6-983P RNA, U6 small nuclear 983, pseudogene pseudogene pseudogene Approved 1q31.3 01q31.3 2013-05-01 2013-05-01 106481490 ENSG00000251813 NG_043588 +HGNC:47947 RNU6-984P RNA, U6 small nuclear 984, pseudogene pseudogene pseudogene Approved 9q31.3 09q31.3 2013-05-01 2013-05-01 106481927 ENSG00000200106 NG_045264 +HGNC:47948 RNU6-985P RNA, U6 small nuclear 985, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2013-05-01 2013-05-01 106480001 ENSG00000222114 NG_043927 +HGNC:47949 RNU6-986P RNA, U6 small nuclear 986, pseudogene pseudogene pseudogene Approved 2p23.3 02p23.3 2013-05-01 2013-05-01 106481491 ENSG00000200003 NG_045502 +HGNC:47950 RNU6-987P RNA, U6 small nuclear 987, pseudogene pseudogene pseudogene Approved 6p22.2 06p22.2 2013-05-01 2013-05-01 106480002 ENSG00000207490 NG_045643 +HGNC:47951 RNU6-988P RNA, U6 small nuclear 988, pseudogene pseudogene pseudogene Approved 8p11.23 08p11.23 2013-05-01 2015-02-05 106480003 ENSG00000253437 NG_045646 +HGNC:47952 RNU6-989P RNA, U6 small nuclear 989, pseudogene pseudogene pseudogene Approved 2q32.1 02q32.1 2013-05-01 2013-05-01 106481492 ENSG00000199626 NG_045071 +HGNC:47953 RNU6-990P RNA, U6 small nuclear 990, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-05-01 2013-05-01 106480627 ENSG00000201255 NG_044838 +HGNC:47954 RNU6-991P RNA, U6 small nuclear 991, pseudogene pseudogene pseudogene Approved 1p36.23 01p36.23 2013-05-01 2013-05-01 106480004 ENSG00000251977 NG_043949 +HGNC:47955 RNU6-992P RNA, U6 small nuclear 992, pseudogene pseudogene pseudogene Approved 21q22.12 21q22.12 2013-05-01 2013-05-01 106481493 ENSG00000200213 NG_045073 +HGNC:47956 RNU6-993P RNA, U6 small nuclear 993, pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 2013-05-01 2013-05-01 106480005 ENSG00000252962 NG_045112 +HGNC:47957 RNU6-994P RNA, U6 small nuclear 994, pseudogene pseudogene pseudogene Approved 20q13.33 20q13.33 2013-05-01 2013-05-01 106480006 ENSG00000222439 NG_043962 +HGNC:47958 RNU6-995P RNA, U6 small nuclear 995, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 2013-05-01 2013-05-01 106481494 ENSG00000212546 NG_043617 +HGNC:47959 RNU6-996P RNA, U6 small nuclear 996, pseudogene pseudogene pseudogene Approved 9q31.2 09q31.2 2013-05-01 2013-05-01 106481928 ENSG00000202308 NG_042969 +HGNC:47960 RNU6-997P RNA, U6 small nuclear 997, pseudogene pseudogene pseudogene Approved 2p16.2 02p16.2 2013-05-01 2013-05-01 106480007 ENSG00000207456 NG_045662 +HGNC:47961 RNU6-998P RNA, U6 small nuclear 998, pseudogene pseudogene pseudogene Approved 4q12 04q12 2013-05-01 2013-05-01 106481495 ENSG00000251703 NG_045513 +HGNC:47962 RNU6-999P RNA, U6 small nuclear 999, pseudogene pseudogene pseudogene Approved 1q44 01q44 2013-05-01 2013-05-01 106480008 ENSG00000251754 NG_045665 +HGNC:47963 RNU6-1000P RNA, U6 small nuclear 1000, pseudogene pseudogene pseudogene Approved 4q21.1 04q21.1 2013-05-01 2013-05-01 106481496 ENSG00000212368 NG_045517 +HGNC:47964 RNU6-1001P RNA, U6 small nuclear 1001, pseudogene pseudogene pseudogene Approved 2q24.1 02q24.1 2013-05-01 2013-05-01 106480628 ENSG00000223197 NG_044847 +HGNC:47966 RNU6-1003P RNA, U6 small nuclear 1003, pseudogene pseudogene pseudogene Approved 5p15.1 05p15.1 2013-05-01 2013-05-01 106481778 ENSG00000252908 NG_045591 +HGNC:47967 RNU6-1004P RNA, U6 small nuclear 1004, pseudogene pseudogene pseudogene Approved 12q24.31 12q24.31 2013-05-01 2013-05-01 106480009 ENSG00000252393 NG_043985 +HGNC:47968 RNU6-1005P RNA, U6 small nuclear 1005, pseudogene pseudogene pseudogene Approved 16p12.2 16p12.2 2013-05-01 2013-05-01 106481497 ENSG00000207248 NG_045520 +HGNC:47969 RNU6-1006P RNA, U6 small nuclear 1006, pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 2013-05-01 2013-05-01 106480010 ENSG00000252807 NG_045116 +HGNC:47970 RNU6-1007P RNA, U6 small nuclear 1007, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 2013-05-01 2013-05-01 106480629 ENSG00000252395 NG_044855 +HGNC:47971 RNU6-1008P RNA, U6 small nuclear 1008, pseudogene pseudogene pseudogene Approved 1q42.11 01q42.11 2013-05-01 2013-05-01 106481498 ENSG00000206887 NG_043645 +HGNC:47972 RNU6-1009P RNA, U6 small nuclear 1009, pseudogene pseudogene pseudogene Approved 12q14.2 12q14.2 2013-05-01 2013-05-01 106481499 ENSG00000212298 NG_043653 +HGNC:47973 RNU6-1010P RNA, U6 small nuclear 1010, pseudogene pseudogene pseudogene Approved 7q32.3 07q32.3 2013-05-01 2013-05-01 106481929 ENSG00000199627 NG_045269 +HGNC:47974 RNU6-1011P RNA, U6 small nuclear 1011, pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 2013-05-01 2013-05-01 106480011 ENSG00000207399 NG_043996 +HGNC:47975 RNU6-1012P RNA, U6 small nuclear 1012, pseudogene pseudogene pseudogene Approved 12q21.1 12q21.1 2013-05-01 2013-05-01 106481500 ENSG00000252415 NG_043661 +HGNC:47976 RNU6-1013P RNA, U6 small nuclear 1013, pseudogene pseudogene pseudogene Approved 9q31.3 09q31.3 2013-05-01 2013-05-01 106480012 ENSG00000206907 NG_044005 +HGNC:47977 RNU6-1014P RNA, U6 small nuclear 1014, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 2013-05-01 2013-05-01 106480013 ENSG00000238456 NG_044014 +HGNC:47978 RNU6-1015P RNA, U6 small nuclear 1015, pseudogene pseudogene pseudogene Approved Xq23 Xq23 2013-05-01 2013-05-01 106481501 ENSG00000252930 NG_043668 +HGNC:47979 RNU6-1016P RNA, U6 small nuclear 1016, pseudogene pseudogene pseudogene Approved 6q14.1 06q14.1 2013-05-01 2013-05-01 106480630 ENSG00000252498 NG_046011 +HGNC:47980 RNU6-1017P RNA, U6 small nuclear 1017, pseudogene pseudogene pseudogene Approved 12q24.33 12q24.33 2013-05-01 2013-05-01 106480014 ENSG00000200483 NG_044021 +HGNC:47981 RNU6-1018P RNA, U6 small nuclear 1018, pseudogene pseudogene pseudogene Approved 20q12 20q12 2013-05-01 2013-05-01 106481502 ENSG00000252386 NG_043675 +HGNC:47982 RNU6-1019P RNA, U6 small nuclear 1019, pseudogene pseudogene pseudogene Approved 20p13 20p13 2013-05-01 2013-05-01 106480015 ENSG00000201294 NG_044030 +HGNC:47983 RNU6-1020P RNA, U6 small nuclear 1020, pseudogene pseudogene pseudogene Approved 9q33.3 09q33.3 2013-05-01 2013-05-01 106481503 ENSG00000200554 NG_043681 +HGNC:47984 RNU6-1021P RNA, U6 small nuclear 1021, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 2013-05-01 2013-05-01 106481930 ENSG00000200132 NG_045273 +HGNC:47985 RNU6-1022P RNA, U6 small nuclear 1022, pseudogene pseudogene pseudogene Approved 1p36.12 01p36.12 2013-05-01 2013-05-01 106480016 ENSG00000201919 NG_045690 +HGNC:47986 RNU6-1023P RNA, U6 small nuclear 1023, pseudogene pseudogene pseudogene Approved 6p12.1 06p12.1 2013-05-01 2013-05-01 106480017 ENSG00000251946 NG_044046 +HGNC:47987 RNU6-1024P RNA, U6 small nuclear 1024, pseudogene pseudogene pseudogene Approved 3p25.1 03p25.1 2013-05-01 2013-05-01 106481504 ENSG00000206926 NG_043692 +HGNC:47988 RNU6-1025P RNA, U6 small nuclear 1025, pseudogene pseudogene pseudogene Approved 11p15.5 11p15.5 2013-05-01 2013-05-01 106480018 ENSG00000222561 NG_045695 +HGNC:47989 RNU6-1026P RNA, U6 small nuclear 1026, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 2013-05-01 2013-05-01 106480631 ENSG00000207194 NG_044871 +HGNC:47990 RNU6-1027P RNA, U6 small nuclear 1027, pseudogene pseudogene pseudogene Approved 2q36.3 02q36.3 2013-05-01 2013-05-01 106481505 ENSG00000206725 NG_045544 +HGNC:47991 RNU6-1028P RNA, U6 small nuclear 1028, pseudogene pseudogene pseudogene Approved 19p13.11 19p13.11 2013-05-01 2013-05-01 106480405 ENSG00000252973 NG_045017 +HGNC:47992 RNU6-1029P RNA, U6 small nuclear 1029, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 2013-05-01 2013-05-01 106480019 ENSG00000206836 NG_044063 +HGNC:47994 RNU6-1031P RNA, U6 small nuclear 1031, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-01 2013-05-01 106480020 ENSG00000207504 NG_044073 +HGNC:47995 RNU6-1032P RNA, U6 small nuclear 1032, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 2013-05-01 2013-05-01 106481506 ENSG00000206827 NG_043705 +HGNC:47997 RNU6-1034P RNA, U6 small nuclear 1034, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-05-01 2013-05-01 106480632 ENSG00000202205 NG_044879 +HGNC:47998 RNU6-1035P RNA, U6 small nuclear 1035, pseudogene pseudogene pseudogene Approved 9q21.32 09q21.32 2013-05-01 2013-05-01 106481507 ENSG00000207206 NG_043710 +HGNC:47999 RNU6-1036P RNA, U6 small nuclear 1036, pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 2013-05-01 2013-05-01 106480021 ENSG00000206686 NG_044081 +HGNC:48000 RNU6-1037P RNA, U6 small nuclear 1037, pseudogene pseudogene pseudogene Approved 18q22.1 18q22.1 2013-05-01 2013-05-01 106481508 ENSG00000238680 NG_043719 +HGNC:48001 RNU6-1038P RNA, U6 small nuclear 1038, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 2013-05-01 2013-05-01 106480022 ENSG00000252325 NG_044088 +HGNC:48002 RNU6-1039P RNA, U6 small nuclear 1039, pseudogene pseudogene pseudogene Approved 9q31.3 09q31.3 2013-05-01 2013-05-01 106481931 ENSG00000206658 NG_045276 +HGNC:48003 RNU6-1040P RNA, U6 small nuclear 1040, pseudogene pseudogene pseudogene Approved 8q21.2 08q21.2 2013-05-01 2013-05-01 106480023 ENSG00000206701 NG_044099 +HGNC:48004 RNU6-1041P RNA, U6 small nuclear 1041, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106481509 ENSG00000252063 NG_043727 +HGNC:48005 RNU6-1042P RNA, U6 small nuclear 1042, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106480024 ENSG00000206931 NG_044108 +HGNC:48006 RNU6-1043P RNA, U6 small nuclear 1043, pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 2013-05-01 2013-05-01 106481510 ENSG00000222287 NG_043736 +HGNC:48007 RNU6-1044P RNA, U6 small nuclear 1044, pseudogene pseudogene pseudogene Approved Xq13.2 Xq13.2 2013-05-01 2013-05-01 106480633 ENSG00000207486 NG_044887 +HGNC:48008 RNU6-1045P RNA, U6 small nuclear 1045, pseudogene pseudogene pseudogene Approved 2q32.3 02q32.3 2013-05-01 2013-05-01 106480025 ENSG00000252130 NG_045713 +HGNC:48009 RNU6-1046P RNA, U6 small nuclear 1046, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 2013-05-01 2013-05-01 106480026 ENSG00000252347 NG_045718 +HGNC:48010 RNU6-1047P RNA, U6 small nuclear 1047, pseudogene pseudogene pseudogene Approved 3q21.3 03q21.3 2013-05-01 2013-05-01 106481511 ENSG00000201288 NG_043742 +HGNC:48011 RNU6-1048P RNA, U6 small nuclear 1048, pseudogene pseudogene pseudogene Approved 2p21 02p21 2013-05-01 2013-05-01 106480027 ENSG00000200924 NG_045134 +HGNC:48012 RNU6-1049P RNA, U6 small nuclear 1049, pseudogene pseudogene pseudogene Approved 2q21.1 02q21.1 2013-05-01 2013-05-01 106481779 ENSG00000252223 NG_045595 +HGNC:48013 RNU6-1050P RNA, U6 small nuclear 1050, pseudogene pseudogene pseudogene Approved 18q12.1 18q12.1 2013-05-01 2013-05-01 106481512 ENSG00000222320 NG_043750 +HGNC:48014 RNU6-1051P RNA, U6 small nuclear 1051, pseudogene pseudogene pseudogene Approved 2q37.3 02q37.3 2013-05-01 2013-05-01 106481932 ENSG00000202341 NG_043004 +HGNC:48015 RNU6-1052P RNA, U6 small nuclear 1052, pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 2013-05-01 2013-05-01 106480028 ENSG00000223330 NG_044137 +HGNC:48016 RNU6-1053P RNA, U6 small nuclear 1053, pseudogene pseudogene pseudogene Approved 4q35.1 04q35.1 2013-05-01 2013-05-01 106481513 ENSG00000251739 NG_045566 +HGNC:48017 RNU6-1054P RNA, U6 small nuclear 1054, pseudogene pseudogene pseudogene Approved 4q26 04q26 2013-05-01 2013-05-01 106480029 ENSG00000223225 NG_045729 +HGNC:48018 RNU6-1055P RNA, U6 small nuclear 1055, pseudogene pseudogene pseudogene Approved 4q35.2 04q35.2 2013-05-01 2013-05-01 107105256 ENSG00000212387 NG_046575 +HGNC:48019 RNU6-1056P RNA, U6 small nuclear 1056, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 2013-05-01 2013-05-01 106481514 ENSG00000206723 NG_043764 +HGNC:48020 RNU6-1057P RNA, U6 small nuclear 1057, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2013-05-01 106480030 ENSG00000252971 NG_045733 +HGNC:48021 RNU6-1058P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-08 +HGNC:48022 RNU6-1059P RNA, U6 small nuclear 1059, pseudogene pseudogene pseudogene Approved 4q22.3 04q22.3 2013-05-01 2013-05-01 106480031 ENSG00000200622 NG_044156 +HGNC:48023 RNU6-1060P RNA, U6 small nuclear 1060, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106480032 ENSG00000207394 NG_044165 +HGNC:48024 RNU6-1061P RNA, U6 small nuclear 1061, pseudogene pseudogene pseudogene Approved 16q22.2 16q22.2 2013-05-01 2013-05-01 106480033 ENSG00000252339 NG_044173 +HGNC:48025 RNU6-1062P RNA, U6 small nuclear 1062, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106480634 ENSG00000206635 NG_046027 +HGNC:48026 RNU6-1063P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:48027 RNU6-1064P RNA, U6 small nuclear 1064, pseudogene pseudogene pseudogene Approved 9q31.2 09q31.2 2013-05-01 2013-05-01 106481515 ENSG00000222558 NG_043772 +HGNC:48028 RNU6-1065P RNA, U6 small nuclear 1065, pseudogene pseudogene pseudogene Approved 17p12 17p12 2013-05-01 2013-05-01 106480034 ENSG00000207242 NG_044182 +HGNC:48029 RNU6-1066P RNA, U6 small nuclear 1066, pseudogene pseudogene pseudogene Approved 22q12.1 22q12.1 2013-05-01 2013-05-01 106480035 ENSG00000200443 NG_044190 +HGNC:48030 RNU6-1067P RNA, U6 small nuclear 1067, pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 2013-05-01 2013-05-01 106481516 ENSG00000207483 NG_043781 +HGNC:48031 RNU6-1068P RNA, U6 small nuclear 1068, pseudogene pseudogene pseudogene Approved 12q23.2 12q23.2 2013-05-01 2013-05-01 106481933 ENSG00000222890 NG_043012 +HGNC:48032 RNU6-1069P RNA, U6 small nuclear 1069, pseudogene pseudogene pseudogene Approved 12p11.21 12p11.21 2013-05-01 2013-05-01 106480036 ENSG00000252421 NG_044194 +HGNC:48033 RNU6-1070P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:48034 RNU6-1071P RNA, U6 small nuclear 1071, pseudogene pseudogene pseudogene Approved 1q21.1 01q21.1 2013-05-01 2013-05-01 106481517 ENSG00000201789 NG_043790 +HGNC:48035 RNU6-1072P RNA, U6 small nuclear 1072, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2013-05-01 2013-05-01 106480037 ENSG00000207434 NG_044199 +HGNC:48036 RNU6-1073P RNA, U6 small nuclear 1073, pseudogene pseudogene pseudogene Approved 9p24.3 09p24.3 2013-05-01 2013-05-01 106481518 ENSG00000252991 NG_043797 +HGNC:48037 RNU6-1074P RNA, U6 small nuclear 1074, pseudogene pseudogene pseudogene Approved 4q31.1 04q31.1 2013-05-01 2013-05-01 106480635 ENSG00000206722 NG_044902 +HGNC:48038 RNU6-1075P RNA, U6 small nuclear 1075, pseudogene pseudogene pseudogene Approved 10p13 10p13 2013-05-01 2013-05-01 106480406 ENSG00000201260 NG_043087 +HGNC:48039 RNU6-1076P RNA, U6 small nuclear 1076, pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 2013-05-01 2013-05-01 106480038 ENSG00000222329 NG_044207 +HGNC:48040 RNU6-1077P RNA, U6 small nuclear 1077, pseudogene pseudogene pseudogene Approved 12q24.33 12q24.33 2013-05-01 2013-05-01 106480039 ENSG00000222438 NG_044215 +HGNC:48041 RNU6-1078P RNA, U6 small nuclear 1078, pseudogene pseudogene pseudogene Approved Xq13.1 Xq13.1 2013-05-01 2013-05-01 106481519 ENSG00000201392 NG_043805 +HGNC:48042 RNU6-1079P RNA, U6 small nuclear 1079, pseudogene pseudogene pseudogene Approved 5p13.3 05p13.3 2013-05-01 2013-05-01 106480040 ENSG00000199731 NG_045770 +HGNC:48043 RNU6-1080P RNA, U6 small nuclear 1080, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 2013-05-01 2013-05-01 106481520 ENSG00000206709 NG_043813 +HGNC:48044 RNU6-1081P RNA, U6 small nuclear 1081, pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 2013-05-01 2013-05-01 106480636 ENSG00000207267 NG_045206 +HGNC:48045 RNU6-1082P RNA, U6 small nuclear 1082, pseudogene pseudogene pseudogene Approved 9q33.1 09q33.1 2013-05-01 2013-05-01 106480041 ENSG00000201444 NG_044231 +HGNC:48046 RNU6-1083P RNA, U6 small nuclear 1083, pseudogene pseudogene pseudogene Approved 12q14.1 12q14.1 2013-05-01 2013-05-01 106481521 ENSG00000206749 NG_045589 +HGNC:48047 RNU6-1084P RNA, U6 small nuclear 1084, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2013-05-01 2013-05-01 106480042 ENSG00000199368 NG_044238 +HGNC:48048 RNU6-1085P RNA, U6 small nuclear 1085, pseudogene pseudogene pseudogene Approved 7p14.2 07p14.2 2013-05-01 2013-05-01 106480043 ENSG00000200446 NG_044247 +HGNC:48049 RNU6-1086P RNA, U6 small nuclear 1086, pseudogene pseudogene pseudogene Approved 8p21.1 08p21.1 2013-05-01 2013-05-01 106481934 ENSG00000222862 NG_043022 +HGNC:48050 RNU6-1087P RNA, U6 small nuclear 1087, pseudogene pseudogene pseudogene Approved Xp21.1 Xp21.1 2013-05-01 2013-05-01 106481522 ENSG00000252411 NG_043831 +HGNC:48051 RNU6-1088P RNA, U6 small nuclear 1088, pseudogene pseudogene pseudogene Approved 12q24.31 12q24.31 2013-05-01 2013-05-01 106480044 ENSG00000252659 NG_045149 +HGNC:48052 RNU6-1089P RNA, U6 small nuclear 1089, pseudogene pseudogene pseudogene Approved 1q44 01q44 2013-05-01 2013-05-01 106481523 ENSG00000252282 NG_045594 +HGNC:48053 RNU6-1090P RNA, U6 small nuclear 1090, pseudogene pseudogene pseudogene Approved 10q25.3 10q25.3 2013-05-01 2013-05-01 106480045 ENSG00000200935 NG_044263 +HGNC:48054 RNU6-1091P RNA, U6 small nuclear 1091, pseudogene pseudogene pseudogene Approved 7p12.1 07p12.1 2013-05-01 2013-05-01 106480637 ENSG00000200815 NG_045207 +HGNC:48055 RNU6-1092P RNA, U6 small nuclear 1092, pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 2013-05-01 2013-05-01 106480046 ENSG00000252764 NG_044273 +HGNC:48056 RNU6-1093P RNA, U6 small nuclear 1093, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 2013-05-01 2013-05-01 106481524 ENSG00000212496 NG_045598 +HGNC:48057 RNU6-1094P RNA, U6 small nuclear 1094, pseudogene pseudogene pseudogene Approved 3q11.2 03q11.2 2013-05-01 2013-05-01 106480047 ENSG00000199286 NG_044283 +HGNC:48058 RNU6-1095P RNA, U6 small nuclear 1095, pseudogene pseudogene pseudogene Approved 10p14 10p14 2013-05-01 2013-05-01 106481525 ENSG00000251957 NG_043851 +HGNC:48059 RNU6-1096P RNA, U6 small nuclear 1096, pseudogene pseudogene pseudogene Approved 4q34.1 04q34.1 2013-05-01 2013-05-01 106480700 ENSG00000252898 NG_043407 +HGNC:48060 RNU6-1097P RNA, U6 small nuclear 1097, pseudogene pseudogene pseudogene Approved 7p13 07p13 2013-05-01 2013-05-01 106480048 ENSG00000200456 NG_044291 +HGNC:48061 RNU6-1098P RNA, U6 small nuclear 1098, pseudogene pseudogene pseudogene Approved 3q25.1 03q25.1 2013-05-01 2013-05-01 106481935 ENSG00000252581 NG_043029 +HGNC:48062 RNU6-1099P RNA, U6 small nuclear 1099, pseudogene pseudogene pseudogene Approved 1p36.13 01p36.13 2013-05-01 2013-05-01 106481526 ENSG00000200403 NG_045606 +HGNC:48063 RNU6-1100P RNA, U6 small nuclear 1100, pseudogene pseudogene pseudogene Approved 1p36.33 01p36.33 2013-05-01 2013-05-01 106480049 ENSG00000222623 NG_045795 +HGNC:48064 RNU6-1101P RNA, U6 small nuclear 1101, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-01 2013-05-01 106480050 ENSG00000252053 NG_044307 +HGNC:48065 RNU6-1102P RNA, U6 small nuclear 1102, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 2013-05-01 2013-05-01 106481527 ENSG00000251958 NG_043860 +HGNC:48066 RNU6-1103P RNA, U6 small nuclear 1103, pseudogene pseudogene pseudogene Approved 7p15.3 07p15.3 2013-05-01 2013-05-01 106480051 ENSG00000206877 NG_045155 +HGNC:48067 RNU6-1104P RNA, U6 small nuclear 1104, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 2013-05-01 2013-05-01 106481528 ENSG00000207454 NG_045103 +HGNC:48068 RNU6-1105P RNA, U6 small nuclear 1105, pseudogene pseudogene pseudogene Approved 3q27.3 03q27.3 2013-05-01 2013-05-01 106480052 ENSG00000207505 NG_044325 +HGNC:48069 RNU6-1106P RNA, U6 small nuclear 1106, pseudogene pseudogene pseudogene Approved 6q16.3 06q16.3 2013-05-01 2013-05-01 106480053 ENSG00000212147 NG_044334 +HGNC:48070 RNU6-1107P RNA, U6 small nuclear 1107, pseudogene pseudogene pseudogene Approved 11q23.2 11q23.2 2013-05-01 2013-05-01 106481529 ENSG00000201687 NG_043876 +HGNC:48071 RNU6-1108P RNA, U6 small nuclear 1108, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 2013-05-01 2013-05-01 107105259 ENSG00000252117 NG_046577 +HGNC:48072 RNU6-1109P RNA, U6 small nuclear 1109, pseudogene pseudogene pseudogene Approved 3q28 03q28 2013-05-01 2013-05-01 106480054 ENSG00000212489 NG_044343 +HGNC:48073 RNU6-1110P RNA, U6 small nuclear 1110, pseudogene pseudogene pseudogene Approved 16q21 16q21 2013-05-01 2013-05-01 106480638 ENSG00000252271 NG_044923 +HGNC:48074 RNU6-1111P RNA, U6 small nuclear 1111, pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 2013-05-01 2013-05-01 106481530 ENSG00000212420 NG_045619 +HGNC:48075 RNU6-1112P RNA, U6 small nuclear 1112, pseudogene pseudogene pseudogene Approved 4p14 04p14 2013-05-01 2013-05-01 106480055 ENSG00000200455 NG_044353 +HGNC:48076 RNU6-1113P RNA, U6 small nuclear 1113, pseudogene pseudogene pseudogene Approved 6p21.1 06p21.1 2013-05-01 2013-05-01 106480056 ENSG00000207076 NG_044363 +HGNC:48077 RNU6-1114P RNA, U6 small nuclear 1114, pseudogene pseudogene pseudogene Approved 6p22.3 06p22.3 2013-05-01 2013-05-01 106481531 ENSG00000251831 NG_043892 +HGNC:48078 RNU6-1115P RNA, U6 small nuclear 1115, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106480639 ENSG00000199360 NG_044933 +HGNC:48079 RNU6-1116P RNA, U6 small nuclear 1116, pseudogene pseudogene pseudogene Approved 2p22.2 02p22.2 2013-05-01 2013-05-01 106480057 ENSG00000253078 NG_045158 +HGNC:48080 RNU6-1117P RNA, U6 small nuclear 1117, pseudogene pseudogene pseudogene Approved 2p22.3 02p22.3 2013-05-01 2013-05-01 106481532 ENSG00000207255 NG_043901 +HGNC:48081 RNU6-1118P RNA, U6 small nuclear 1118, pseudogene pseudogene pseudogene Approved 10p11.1 10p11.1 2013-05-01 2013-05-01 106480058 ENSG00000222314 NG_045821 +HGNC:48082 RNU6-1119P RNA, U6 small nuclear 1119, pseudogene pseudogene pseudogene Approved 5q21.1 05q21.1 2013-05-01 2013-05-01 106481533 ENSG00000207077 NG_043907 +HGNC:48083 RNU6-1120P RNA, U6 small nuclear 1120, pseudogene pseudogene pseudogene Approved 3q26.32 03q26.32 2013-05-01 2013-05-01 106480059 ENSG00000199858 NG_044385 +HGNC:48084 RNU6-1121P RNA, U6 small nuclear 1121, pseudogene pseudogene pseudogene Approved 10q25.3 10q25.3 2013-05-01 2013-05-01 106481780 ENSG00000252611 NG_043846 +HGNC:48085 RNU6-1122P RNA, U6 small nuclear 1122, pseudogene pseudogene pseudogene Approved 2q32.1 02q32.1 2013-05-01 2013-05-01 106481936 ENSG00000207178 NG_045012 +HGNC:48086 RNU6-1123P RNA, U6 small nuclear 1123, pseudogene pseudogene pseudogene Approved 11q23.3 11q23.3 2013-05-01 2013-05-01 106480060 ENSG00000199217 NG_045826 +HGNC:48087 RNU6-1124P RNA, U6 small nuclear 1124, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 2013-05-01 2013-05-01 106481534 ENSG00000206896 NG_043914 +HGNC:48088 RNU6-1125P RNA, U6 small nuclear 1125, pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 2013-05-01 2013-05-01 106480061 ENSG00000200471 NG_044401 +HGNC:48089 RNU6-1126P RNA, U6 small nuclear 1126, pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 2013-05-01 2013-05-01 106481535 ENSG00000206729 NG_043917 +HGNC:48090 RNU6-1127P RNA, U6 small nuclear 1127, pseudogene pseudogene pseudogene Approved 3q13.33 03q13.33 2013-05-01 2013-05-01 106480640 ENSG00000207310 NG_042905 +HGNC:48091 RNU6-1128P RNA, U6 small nuclear 1128, pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 2013-05-01 2013-05-01 106480062 ENSG00000199695 NG_045159 +HGNC:48092 RNU6-1129P RNA, U6 small nuclear 1129, pseudogene pseudogene pseudogene Approved 3p12.1 03p12.1 2013-05-01 2013-05-01 106481536 ENSG00000251773 NG_043923 +HGNC:48093 RNU6-1130P RNA, U6 small nuclear 1130, pseudogene pseudogene pseudogene Approved Xq26.1 Xq26.1 2013-05-01 2013-05-01 106480063 ENSG00000202304 NG_044419 +HGNC:48094 RNU6-1131P RNA, U6 small nuclear 1131, pseudogene pseudogene pseudogene Approved 18q21.1 18q21.1 2013-05-01 2013-05-01 106480064 ENSG00000201825 NG_045839 +HGNC:48095 RNU6-1132P RNA, U6 small nuclear 1132, pseudogene pseudogene pseudogene Approved 2q21.2 02q21.2 2013-05-01 2013-05-01 106481937 ENSG00000239108 NG_045292 +HGNC:48096 RNU6-1133P RNA, U6 small nuclear 1133, pseudogene pseudogene pseudogene Approved 6p21.33 06p21.33 RNU6-186P RNA, U6 small nuclear 186, pseudogene 2013-05-01 2016-02-10 106481537 ENSG00000222895 NG_043929 +HGNC:48097 RNU6-1134P RNA, U6 small nuclear 1134, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-05-01 2013-05-01 106480065 ENSG00000202026 NG_044436 +HGNC:48098 RNU6-1135P RNA, U6 small nuclear 1135, pseudogene pseudogene pseudogene Approved 11q14.2 11q14.2 2013-05-01 2013-05-01 106481538 ENSG00000223015 NG_043937 +HGNC:48099 RNU6-1136P RNA, U6 small nuclear 1136, pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 2013-05-01 2013-05-01 106480066 ENSG00000252643 NG_045165 +HGNC:48100 RNU6-1137P RNA, U6 small nuclear 1137, pseudogene pseudogene pseudogene Approved 17q21.31 17q21.31 2013-05-01 2013-05-01 106480067 ENSG00000252882 NG_044449 +HGNC:48101 RNU6-1138P RNA, U6 small nuclear 1138, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 2013-05-01 2013-05-01 106480641 ENSG00000202229 NG_045238 +HGNC:48102 RNU6-1139P RNA, U6 small nuclear 1139, pseudogene pseudogene pseudogene Approved 1q43 01q43 2013-05-01 2013-05-01 106481539 ENSG00000223119 NG_043945 +HGNC:48103 RNU6-1140P RNA, U6 small nuclear 1140, pseudogene pseudogene pseudogene Approved 2q37.3 02q37.3 2013-05-01 2013-05-01 106480068 ENSG00000222449 NG_045166 +HGNC:48104 RNU6-1141P RNA, U6 small nuclear 1141, pseudogene pseudogene pseudogene Approved 10p12.31 10p12.31 2013-05-01 2013-05-01 106481540 ENSG00000201390 NG_043954 +HGNC:48105 RNU6-1142P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:48106 RNU6-1143P RNA, U6 small nuclear 1143, pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 2013-05-01 2013-05-01 106480069 ENSG00000251934 NG_045859 +HGNC:48107 RNU6-1144P RNA, U6 small nuclear 1144, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106481938 ENSG00000206974 NG_043059 +HGNC:48108 RNU6-1145P RNA, U6 small nuclear 1145, pseudogene pseudogene pseudogene Approved 2p15 02p15 2013-05-01 2013-05-01 106481541 ENSG00000206973 NG_043959 +HGNC:48109 RNU6-1146P RNA, U6 small nuclear 1146, pseudogene pseudogene pseudogene Approved 20q13.31 20q13.31 2013-05-01 2013-05-01 106480070 ENSG00000252091 NG_044471 +HGNC:48110 RNU6-1147P RNA, U6 small nuclear 1147, pseudogene pseudogene pseudogene Approved 2q14.3 02q14.3 2013-05-01 2013-05-01 106480071 ENSG00000200250 NG_045168 +HGNC:48111 RNU6-1148P RNA, U6 small nuclear 1148, pseudogene pseudogene pseudogene Approved 5q31.2 05q31.2 2013-05-01 2013-05-01 106480642 ENSG00000222924 NG_042916 +HGNC:48112 RNU6-1149P RNA, U6 small nuclear 1149, pseudogene pseudogene pseudogene Approved 21q22.3 21q22.3 2013-05-01 2013-05-01 106481542 ENSG00000252619 NG_045659 +HGNC:48113 RNU6-1150P RNA, U6 small nuclear 1150, pseudogene pseudogene pseudogene Approved 21q22.3 21q22.3 2013-05-01 2013-05-01 106480072 ENSG00000252606 NG_045172 +HGNC:48114 RNU6-1151P RNA, U6 small nuclear 1151, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 2013-05-01 2013-05-01 106481543 ENSG00000207415 NG_043973 +HGNC:48115 RNU6-1152P RNA, U6 small nuclear 1152, pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 2013-05-01 2013-05-01 106480073 ENSG00000207306 NG_045871 +HGNC:48116 RNU6-1153P RNA, U6 small nuclear 1153, pseudogene pseudogene pseudogene Approved 16q12.2 16q12.2 2013-05-01 2013-05-01 106480643 ENSG00000252569 NG_042925 +HGNC:48117 RNU6-1154P RNA, U6 small nuclear 1154, pseudogene pseudogene pseudogene Approved 7q33 07q33 2013-05-01 2013-05-01 106480074 ENSG00000212303 NG_044500 +HGNC:48118 RNU6-1155P RNA, U6 small nuclear 1155, pseudogene pseudogene pseudogene Approved 16q21 16q21 2013-05-01 2013-05-01 106481544 ENSG00000200424 NG_043980 +HGNC:48119 RNU6-1156P RNA, U6 small nuclear 1156, pseudogene pseudogene pseudogene Approved 11q24.2 11q24.2 2013-05-01 2013-05-01 106480075 ENSG00000222297 NG_045875 +HGNC:48120 RNU6-1157P RNA, U6 small nuclear 1157, pseudogene pseudogene pseudogene Approved 11q23.3 11q23.3 2013-05-01 2013-05-01 106481545 ENSG00000207185 NG_045670 +HGNC:48121 RNU6-1158P RNA, U6 small nuclear 1158, pseudogene pseudogene pseudogene Approved 17q22 17q22 2013-05-01 2013-05-01 106480076 ENSG00000212469 NG_044519 +HGNC:48122 RNU6-1159P RNA, U6 small nuclear 1159, pseudogene pseudogene pseudogene Approved 20p12.1 20p12.1 2013-05-01 2013-05-01 106481939 ENSG00000199803 NG_043066 +HGNC:48123 RNU6-1160P RNA, U6 small nuclear 1160, pseudogene pseudogene pseudogene Approved 9q22.32 09q22.32 2013-05-01 2013-05-01 106481546 ENSG00000207276 NG_045677 +HGNC:48124 RNU6-1161P RNA, U6 small nuclear 1161, pseudogene pseudogene pseudogene Approved 22q13.31 22q13.31 2013-05-01 2013-05-01 106480077 ENSG00000251985 NG_044529 +HGNC:48125 RNU6-1162P RNA, U6 small nuclear 1162, pseudogene pseudogene pseudogene Approved 14q23.2 14q23.2 2013-05-01 2013-05-01 106480078 ENSG00000207172 NG_045883 +HGNC:48126 RNU6-1163P RNA, U6 small nuclear 1163, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106481547 ENSG00000201386 NG_044000 +HGNC:48127 RNU6-1164P RNA, U6 small nuclear 1164, pseudogene pseudogene pseudogene Approved 5q31.1 05q31.1 2013-05-01 2013-05-01 106480644 ENSG00000201298 NG_042933 +HGNC:48128 RNU6-1165P RNA, U6 small nuclear 1165, pseudogene pseudogene pseudogene Approved 10q24.32 10q24.32 2013-05-01 2013-05-01 106480079 ENSG00000222051 NG_044541 +HGNC:48129 RNU6-1166P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-10-08 +HGNC:48130 RNU6-1167P RNA, U6 small nuclear 1167, pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 2013-05-01 2013-05-01 106480407 ENSG00000200097 NG_043094 +HGNC:48131 RNU6-1168P RNA, U6 small nuclear 1168, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 2013-05-01 2013-05-01 106481548 ENSG00000212133 NG_044009 +HGNC:48132 RNU6-1169P RNA, U6 small nuclear 1169, pseudogene pseudogene pseudogene Approved 15q15.1 15q15.1 2013-05-01 2013-05-01 106480080 ENSG00000200407 NG_044549 +HGNC:48133 RNU6-1170P RNA, U6 small nuclear 1170, pseudogene pseudogene pseudogene Approved 10q11.21 10q11.21 2013-05-01 2013-05-01 106480081 ENSG00000251783 NG_045894 +HGNC:48134 RNU6-1171P RNA, U6 small nuclear 1171, pseudogene pseudogene pseudogene Approved 1p36.11 01p36.11 2013-05-01 2013-05-01 106481940 ENSG00000252515 NG_043072 +HGNC:48135 RNU6-1172P RNA, U6 small nuclear 1172, pseudogene pseudogene pseudogene Approved 8q22.1 08q22.1 2013-05-01 2013-05-01 106481549 ENSG00000202095 NG_044016 +HGNC:48137 RNU6-1174P RNA, U6 small nuclear 1174, pseudogene pseudogene pseudogene Approved 3q22.2 03q22.2 2013-05-01 2013-05-01 106481550 ENSG00000253087 NG_044026 +HGNC:48138 RNU6-1175P RNA, U6 small nuclear 1175, pseudogene pseudogene pseudogene Approved 11q13.3 11q13.3 2013-05-01 2013-05-01 106480082 ENSG00000202070 NG_044564 +HGNC:48139 RNU6-1176P RNA, U6 small nuclear 1176, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-01 2013-05-01 106481551 ENSG00000212257 NG_044034 +HGNC:48140 RNU6-1177P RNA, U6 small nuclear 1177, pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-05-01 2013-05-01 106480645 ENSG00000212360 NG_045255 +HGNC:48141 RNU6-1178P RNA, U6 small nuclear 1178, pseudogene pseudogene pseudogene Approved 17p11.2 17p11.2 2013-05-01 2013-05-01 106480083 ENSG00000252483 NG_045899 +HGNC:48142 RNU6-1179P RNA, U6 small nuclear 1179, pseudogene pseudogene pseudogene Approved 19p12 19p12 2013-05-01 2013-05-01 106480084 ENSG00000207397 NG_044582 +HGNC:48143 RNU6-1180P RNA, U6 small nuclear 1180, pseudogene pseudogene pseudogene Approved 2q13 02q13 2013-05-01 2013-05-01 106481552 ENSG00000201805 NG_045124 +HGNC:48144 RNU6-1181P RNA, U6 small nuclear 1181, pseudogene pseudogene pseudogene Approved 3p14.3 03p14.3 2013-05-01 2013-05-01 106480085 ENSG00000206918 NG_044592 +HGNC:48145 RNU6-1182P entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-01-13 +HGNC:48146 RNU6-1183P RNA, U6 small nuclear 1183, pseudogene pseudogene pseudogene Approved 12q23.2 12q23.2 2013-05-01 2013-05-01 106481941 ENSG00000252863 NG_043080 +HGNC:48147 RNU6-1184P RNA, U6 small nuclear 1184, pseudogene pseudogene pseudogene Approved 7q35 07q35 2013-05-01 2013-05-01 106481553 ENSG00000207318 NG_045125 +HGNC:48149 RNU6-1186P RNA, U6 small nuclear 1186, pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 2013-05-01 2013-05-01 106480086 ENSG00000222361 NG_044599 +HGNC:48150 RNU6-1187P RNA, U6 small nuclear 1187, pseudogene pseudogene pseudogene Approved 4q21.1 04q21.1 2013-05-01 2013-05-01 106481554 ENSG00000201641 NG_044059 +HGNC:48151 RNU6-1188P RNA, U6 small nuclear 1188, pseudogene pseudogene pseudogene Approved 12q24.21 12q24.21 2013-05-01 2013-05-01 106480408 ENSG00000200665 NG_043103 +HGNC:48152 RNU6-1189P RNA, U6 small nuclear 1189, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 2013-05-01 2013-05-01 106480646 ENSG00000206685 NG_045259 +HGNC:48153 RNU6-1190P RNA, U6 small nuclear 1190, pseudogene pseudogene pseudogene Approved 5p13.2 05p13.2 2013-05-01 2013-05-01 106480087 ENSG00000222743 NG_044610 +HGNC:48154 RNU6-1191P RNA, U6 small nuclear 1191, pseudogene pseudogene pseudogene Approved 16q23.2 16q23.2 2013-05-01 2013-05-01 106481555 ENSG00000252608 NG_045697 +HGNC:48155 RNU6-1192P RNA, U6 small nuclear 1192, pseudogene pseudogene pseudogene Approved 17q12 17q12 2013-05-01 2015-02-04 106480088 ENSG00000277029 NG_044618 +HGNC:48156 RNU6-1193P RNA, U6 small nuclear 1193, pseudogene pseudogene pseudogene Approved 9q21.11 09q21.11 2013-05-01 2013-05-01 106481556 ENSG00000238551 NG_045700 +HGNC:48157 RNU6-1194P RNA, U6 small nuclear 1194, pseudogene pseudogene pseudogene Approved 3p26.3 03p26.3 2013-05-01 2013-05-01 106481557 ENSG00000252017 NG_044083 +HGNC:48158 RNU6-1195P RNA, U6 small nuclear 1195, pseudogene pseudogene pseudogene Approved 4p14 04p14 2013-05-01 2013-05-01 106480647 ENSG00000207198 NG_042957 +HGNC:48159 RNU6-1196P RNA, U6 small nuclear 1196, pseudogene pseudogene pseudogene Approved 4q31.3 04q31.3 2013-05-01 2013-05-01 106480089 ENSG00000252030 NG_044626 +HGNC:48160 RNU6-1197P RNA, U6 small nuclear 1197, pseudogene pseudogene pseudogene Approved 8q21.11 08q21.11 2013-05-01 2013-05-01 106481558 ENSG00000212485 NG_044094 +HGNC:48161 RNU6-1198P RNA, U6 small nuclear 1198, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 2013-05-01 2013-05-01 106480090 ENSG00000252713 NG_045185 +HGNC:48162 RNU6-1199P RNA, U6 small nuclear 1199, pseudogene pseudogene pseudogene Approved 1p36.33 01p36.33 2013-05-01 2013-05-01 106480091 ENSG00000223181 NG_045923 +HGNC:48163 RNU6-1200P RNA, U6 small nuclear 1200, pseudogene pseudogene pseudogene Approved 3q13.31 03q13.31 2013-05-01 2013-05-01 106481559 ENSG00000206889 NG_044104 +HGNC:48164 RNU6-1201P RNA, U6 small nuclear 1201, pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 2013-05-01 2013-05-01 106481942 ENSG00000206954 NG_045311 +HGNC:48165 RNU6-1202P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:48166 RNU6-1203P RNA, U6 small nuclear 1203, pseudogene pseudogene pseudogene Approved 12q13.11 12q13.11 2013-05-01 2013-05-01 106480092 ENSG00000222635 NG_044647 +HGNC:48167 RNU6-1204P RNA, U6 small nuclear 1204, pseudogene pseudogene pseudogene Approved 14q22.3 14q22.3 2013-05-01 2013-05-01 106481560 ENSG00000200818 NG_045710 +HGNC:48168 RNU6-1205P RNA, U6 small nuclear 1205, pseudogene pseudogene pseudogene Approved 1q44 01q44 2013-05-01 2013-05-01 106480093 ENSG00000200495 NG_044653 +HGNC:48169 RNU6-1206P RNA, U6 small nuclear 1206, pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 2013-05-01 2013-05-01 106481561 ENSG00000252148 NG_045715 +HGNC:48170 RNU6-1207P RNA, U6 small nuclear 1207, pseudogene pseudogene pseudogene Approved 10q11.21 10q11.21 2013-05-01 2013-05-01 106480648 ENSG00000207071 NG_042966 +HGNC:48171 RNU6-1208P RNA, U6 small nuclear 1208, pseudogene pseudogene pseudogene Approved 1p36.11 01p36.11 2013-05-01 2013-05-01 106480094 ENSG00000238482 NG_044662 +HGNC:48172 RNU6-1209P RNA, U6 small nuclear 1209, pseudogene pseudogene pseudogene Approved 8q22.1 08q22.1 2013-05-01 2013-05-01 106480095 ENSG00000200525 NG_045940 +HGNC:48173 RNU6-1210P RNA, U6 small nuclear 1210, pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 2013-05-01 2013-05-01 106481562 ENSG00000200645 NG_045720 +HGNC:48174 RNU6-1211P RNA, U6 small nuclear 1211, pseudogene pseudogene pseudogene Approved 1q42.2 01q42.2 2013-05-01 2013-05-01 106480096 ENSG00000238382 NG_044673 +HGNC:48175 RNU6-1212P RNA, U6 small nuclear 1212, pseudogene pseudogene pseudogene Approved 10p12.31 10p12.31 2013-05-01 2013-05-01 106481943 ENSG00000252832 NG_043099 +HGNC:48176 RNU6-1213P RNA, U6 small nuclear 1213, pseudogene pseudogene pseudogene Approved 8q21.13 08q21.13 2013-05-01 2013-05-01 106481563 ENSG00000252884 NG_044134 +HGNC:48177 RNU6-1214P RNA, U6 small nuclear 1214, pseudogene pseudogene pseudogene Approved 4q31.1 04q31.1 2013-05-01 2013-05-01 106481781 ENSG00000200520 NG_045603 +HGNC:48178 RNU6-1215P RNA, U6 small nuclear 1215, pseudogene pseudogene pseudogene Approved 2p24.2 02p24.2 2013-05-01 2013-05-01 106480097 ENSG00000207170 NG_045949 +HGNC:48179 RNU6-1216P RNA, U6 small nuclear 1216, pseudogene pseudogene pseudogene Approved 2p13.3 02p13.3 2013-05-01 2013-05-01 106480098 ENSG00000199460 NG_045953 +HGNC:48180 RNU6-1217P RNA, U6 small nuclear 1217, pseudogene pseudogene pseudogene Approved 4q26 04q26 2013-05-01 2013-05-01 106481564 ENSG00000223208 NG_045135 +HGNC:48181 RNU6-1218P RNA, U6 small nuclear 1218, pseudogene pseudogene pseudogene Approved 8p12 08p12 2013-05-01 2013-05-01 106480099 ENSG00000239175 NG_044701 +HGNC:48182 RNU6-1219P RNA, U6 small nuclear 1219, pseudogene pseudogene pseudogene Approved 22q12.1 22q12.1 2013-05-01 2013-05-01 106480649 ENSG00000251952 NG_042976 +HGNC:48183 RNU6-1220P RNA, U6 small nuclear 1220, pseudogene pseudogene pseudogene Approved 8q21.12 08q21.12 2013-05-01 2013-05-01 106481565 ENSG00000252935 NG_044148 +HGNC:48185 RNU6-1222P RNA, U6 small nuclear 1222, pseudogene pseudogene pseudogene Approved 6q24.3 06q24.3 2013-05-01 2013-05-01 106480100 ENSG00000207345 NG_044712 +HGNC:48186 RNU6-1223P RNA, U6 small nuclear 1223, pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 2013-05-01 2013-05-01 106481566 ENSG00000252933 NG_045736 +HGNC:48187 RNU6-1224P RNA, U6 small nuclear 1224, pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 2013-05-01 2013-05-01 106480101 ENSG00000252593 NG_044718 +HGNC:48188 RNU6-1225P RNA, U6 small nuclear 1225, pseudogene pseudogene pseudogene Approved Xq12 Xq12 2013-05-01 2013-05-01 106480650 ENSG00000252145 NG_045272 +HGNC:48189 RNU6-1226P RNA, U6 small nuclear 1226, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106480102 ENSG00000207044 NG_045961 +HGNC:48190 RNU6-1227P RNA, U6 small nuclear 1227, pseudogene pseudogene pseudogene Approved 3p22.2 03p22.2 2013-05-01 2013-05-01 106481567 ENSG00000206708 NG_044161 +HGNC:48191 RNU6-1228P RNA, U6 small nuclear 1228, pseudogene pseudogene pseudogene Approved 9q21.13 09q21.13 2013-05-01 2013-05-01 106480103 ENSG00000212316 NG_044737 +HGNC:48192 RNU6-1229P RNA, U6 small nuclear 1229, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 2013-05-01 2013-05-01 106481568 ENSG00000201165 NG_044169 +HGNC:48193 RNU6-1230P RNA, U6 small nuclear 1230, pseudogene pseudogene pseudogene Approved 4q31.23 04q31.23 2013-05-01 2013-05-01 106481944 ENSG00000207121 NG_043109 +HGNC:48194 RNU6-1231P RNA, U6 small nuclear 1231, pseudogene pseudogene pseudogene Approved 10q24.32 10q24.32 2013-05-01 2013-05-01 106480104 ENSG00000252994 NG_045967 +HGNC:48195 RNU6-1232P RNA, U6 small nuclear 1232, pseudogene pseudogene pseudogene Approved 5q13.1 05q13.1 2013-05-01 2013-05-01 106480105 ENSG00000252108 NG_044754 +HGNC:48196 RNU6-1233P RNA, U6 small nuclear 1233, pseudogene pseudogene pseudogene Approved 3q26.31 03q26.31 2013-05-01 2013-05-01 106481569 ENSG00000199792 NG_044178 +HGNC:48197 RNU6-1234P RNA, U6 small nuclear 1234, pseudogene pseudogene pseudogene Approved 14q12 14q12 2013-05-01 2013-05-01 106480106 ENSG00000252686 NG_044762 +HGNC:48198 RNU6-1235P RNA, U6 small nuclear 1235, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 2013-05-01 2013-05-01 106480701 ENSG00000207289 NG_043417 +HGNC:48199 RNU6-1236P RNA, U6 small nuclear 1236, pseudogene pseudogene pseudogene Approved 3q13.13 03q13.13 2013-05-01 2013-05-01 106481570 ENSG00000252889 NG_044186 +HGNC:48200 RNU6-1237P RNA, U6 small nuclear 1237, pseudogene pseudogene pseudogene Approved 1p34.2 01p34.2 2013-05-01 2013-05-01 106480651 ENSG00000207508 NG_045274 +HGNC:48201 RNU6-1238P RNA, U6 small nuclear 1238, pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 2013-05-01 2013-05-01 106480107 ENSG00000253024 NG_044770 +HGNC:48202 RNU6-1239P RNA, U6 small nuclear 1239, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 2013-05-01 2013-05-01 106481571 ENSG00000212612 NG_045753 +HGNC:48203 RNU6-1240P RNA, U6 small nuclear 1240, pseudogene pseudogene pseudogene Approved 1q31.1 01q31.1 2013-05-01 2013-05-01 106866914 ENSG00000202025 NG_046325 +HGNC:48204 RNU6-1241P RNA, U6 small nuclear 1241, pseudogene pseudogene pseudogene Approved 16p12.1 16p12.1 2013-05-01 2013-05-01 106481572 ENSG00000207266 NG_045756 +HGNC:48205 RNU6-1242P RNA, U6 small nuclear 1242, pseudogene pseudogene pseudogene Approved 18q12.3 18q12.3 2013-05-01 2013-05-01 106480108 ENSG00000212354 NG_045977 +HGNC:48206 RNU6-1243P RNA, U6 small nuclear 1243, pseudogene pseudogene pseudogene Approved 11q12.3 11q12.3 2013-05-01 2013-05-01 106481573 ENSG00000200898 NG_045762 +HGNC:48207 RNU6-1244P RNA, U6 small nuclear 1244, pseudogene pseudogene pseudogene Approved 10p11.22 10p11.22 2013-05-01 2013-05-01 106481945 ENSG00000200484 NG_043118 +HGNC:48208 RNU6-1245P RNA, U6 small nuclear 1245, pseudogene pseudogene pseudogene Approved 1p35.3 01p35.3 2013-05-01 2013-05-01 106480109 ENSG00000223062 NG_044787 +HGNC:48209 RNU6-1246P RNA, U6 small nuclear 1246, pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 2013-05-01 2013-05-01 106480110 ENSG00000212366 NG_044796 +HGNC:48210 RNU6-1247P RNA, U6 small nuclear 1247, pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 2013-05-01 2013-05-01 106481574 ENSG00000252431 NG_044212 +HGNC:48211 RNU6-1248P RNA, U6 small nuclear 1248, pseudogene pseudogene pseudogene Approved 1q41 01q41 2013-05-01 2013-05-01 106480111 ENSG00000212398 NG_044803 +HGNC:48212 RNU6-1249P RNA, U6 small nuclear 1249, pseudogene pseudogene pseudogene Approved 17q22 17q22 2013-05-01 2013-05-01 106480652 ENSG00000200107 NG_043000 +HGNC:48213 RNU6-1250P RNA, U6 small nuclear 1250, pseudogene pseudogene pseudogene Approved 10q21.3 10q21.3 2013-05-01 2013-05-01 106481575 ENSG00000212520 NG_044219 +HGNC:48214 RNU6-1251P RNA, U6 small nuclear 1251, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 2013-05-01 2013-05-01 106480112 ENSG00000201372 NG_044812 +HGNC:48215 RNU6-1252P RNA, U6 small nuclear 1252, pseudogene pseudogene pseudogene Approved 4q12 04q12 2013-05-01 2013-05-01 106480113 ENSG00000199924 NG_044822 +HGNC:48216 RNU6-1253P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:48217 RNU6-1254P RNA, U6 small nuclear 1254, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 2013-05-01 2013-05-01 106481576 ENSG00000212568 NG_044227 +HGNC:48218 RNU6-1255P RNA, U6 small nuclear 1255, pseudogene pseudogene pseudogene Approved 8q24.21 08q24.21 2013-05-01 2013-05-01 106481946 ENSG00000200304 NG_045325 +HGNC:48219 RNU6-1256P RNA, U6 small nuclear 1256, pseudogene pseudogene pseudogene Approved 3q12.3 03q12.3 2013-05-01 2013-05-01 106480114 ENSG00000252348 NG_044829 +HGNC:48220 RNU6-1257P RNA, U6 small nuclear 1257, pseudogene pseudogene pseudogene Approved 20p11.21 20p11.21 2013-05-01 2013-05-01 106481577 ENSG00000207355 NG_045776 +HGNC:48221 RNU6-1258P RNA, U6 small nuclear 1258, pseudogene pseudogene pseudogene Approved 14q32.12 14q32.12 2013-05-01 2013-05-01 106480115 ENSG00000252720 NG_044837 +HGNC:48222 RNU6-1259P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:48223 RNU6-1260P RNA, U6 small nuclear 1260, pseudogene pseudogene pseudogene Approved 9p22.3 09p22.3 2013-05-01 2013-05-01 106481578 ENSG00000199814 NG_044242 +HGNC:48224 RNU6-1261P RNA, U6 small nuclear 1261, pseudogene pseudogene pseudogene Approved 14q13.1 14q13.1 2013-05-01 2013-05-01 106480116 ENSG00000253003 NG_044846 +HGNC:48225 RNU6-1262P RNA, U6 small nuclear 1262, pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 2013-05-01 2013-05-01 106480409 ENSG00000252026 NG_043114 +HGNC:48226 RNU6-1263P RNA, U6 small nuclear 1263, pseudogene pseudogene pseudogene Approved 3q12.1 03q12.1 2013-05-01 2013-05-01 106480653 ENSG00000207331 NG_043010 +HGNC:48227 RNU6-1264P RNA, U6 small nuclear 1264, pseudogene pseudogene pseudogene Approved 17p13.2 17p13.2 2013-05-01 2013-05-01 106480117 ENSG00000206618 NG_044854 +HGNC:48228 RNU6-1265P RNA, U6 small nuclear 1265, pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2013-05-01 2013-05-01 106481579 ENSG00000252151 NG_044252 +HGNC:48229 RNU6-1266P RNA, U6 small nuclear 1266, pseudogene pseudogene pseudogene Approved 10q22.3 10q22.3 2013-05-01 2013-05-01 106480118 ENSG00000199664 NG_044865 +HGNC:48230 RNU6-1267P RNA, U6 small nuclear 1267, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-05-01 2013-05-01 106481580 ENSG00000222679 NG_045784 +HGNC:48231 RNU6-1268P RNA, U6 small nuclear 1268, pseudogene pseudogene pseudogene Approved 14q11.2 14q11.2 2013-05-01 2013-05-01 106480654 ENSG00000212516 NG_045285 +HGNC:48232 RNU6-1269P RNA, U6 small nuclear 1269, pseudogene pseudogene pseudogene Approved 9p12 09p12 2013-05-01 2013-05-01 106480119 ENSG00000212441 NG_046018 +HGNC:48233 RNU6-1270P RNA, U6 small nuclear 1270, pseudogene pseudogene pseudogene Approved 3p13 03p13 2013-05-01 2013-05-01 106481581 ENSG00000252937 NG_044269 +HGNC:48234 RNU6-1271P RNA, U6 small nuclear 1271, pseudogene pseudogene pseudogene Approved 12q21.2 12q21.2 2013-05-01 2013-05-01 106480120 ENSG00000252858 NG_044877 +HGNC:48235 RNU6-1272P RNA, U6 small nuclear 1272, pseudogene pseudogene pseudogene Approved 7q34 07q34 2013-05-01 2013-05-01 106480121 ENSG00000199646 NG_046024 +HGNC:48236 RNU6-1273P RNA, U6 small nuclear 1273, pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 2013-05-01 2013-05-01 106481947 ENSG00000199903 NG_043132 +HGNC:48237 RNU6-1274P RNA, U6 small nuclear 1274, pseudogene pseudogene pseudogene Approved 10q24.1 10q24.1 2013-05-01 2013-05-01 106481582 ENSG00000207287 NG_044277 +HGNC:48238 RNU6-1275P RNA, U6 small nuclear 1275, pseudogene pseudogene pseudogene Approved 2q22.3 02q22.3 2013-05-01 2013-05-01 106480122 ENSG00000212389 NG_046026 +HGNC:48239 RNU6-1276P RNA, U6 small nuclear 1276, pseudogene pseudogene pseudogene Approved 8p21.1 08p21.1 2013-05-01 2013-05-01 106481583 ENSG00000202242 NG_044286 +HGNC:48240 RNU6-1277P RNA, U6 small nuclear 1277, pseudogene pseudogene pseudogene Approved 14q21.1 14q21.1 2013-05-01 2013-05-01 106480123 ENSG00000201431 NG_044900 +HGNC:48241 RNU6-1278P RNA, U6 small nuclear 1278, pseudogene pseudogene pseudogene Approved 18q21.1 18q21.1 2013-05-01 2013-05-01 106480124 ENSG00000251939 NG_044910 +HGNC:48242 RNU6-1279P RNA, U6 small nuclear 1279, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-05-01 2013-05-01 106480655 ENSG00000206644 NG_045287 +HGNC:48243 RNU6-1280P RNA, U6 small nuclear 1280, pseudogene pseudogene pseudogene Approved 15q25.3 15q25.3 2013-05-01 2013-05-01 106481584 ENSG00000202081 NG_044296 +HGNC:48244 RNU6-1281P RNA, U6 small nuclear 1281, pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 2013-05-01 2013-05-01 106480125 ENSG00000252032 NG_044916 +HGNC:48245 RNU6-1282P RNA, U6 small nuclear 1282, pseudogene pseudogene pseudogene Approved 4q31.3 04q31.3 2013-05-01 2013-05-01 106481585 ENSG00000252544 NG_044303 +HGNC:48246 RNU6-1283P RNA, U6 small nuclear 1283, pseudogene pseudogene pseudogene Approved 1q44 01q44 2013-05-01 2013-05-01 106481782 ENSG00000202184 NG_045607 +HGNC:48247 RNU6-1284P RNA, U6 small nuclear 1284, pseudogene pseudogene pseudogene Approved 3q22.3 03q22.3 2013-05-01 2013-05-01 106480126 ENSG00000200571 NG_046042 +HGNC:48248 RNU6-1285P RNA, U6 small nuclear 1285, pseudogene pseudogene pseudogene Approved 4q31.3 04q31.3 2013-05-01 2013-05-01 106481948 ENSG00000200350 NG_045333 +HGNC:48249 RNU6-1286P RNA, U6 small nuclear 1286, pseudogene pseudogene pseudogene Approved 6q22.31 06q22.31 2013-05-01 2013-05-01 106481586 ENSG00000206598 NG_044311 +HGNC:48250 RNU6-1287P RNA, U6 small nuclear 1287, pseudogene pseudogene pseudogene Approved 15q21.3 15q21.3 2013-05-01 2013-05-01 106480127 ENSG00000199784 NG_044931 +HGNC:48251 RNU6-1288P RNA, U6 small nuclear 1288, pseudogene pseudogene pseudogene Approved 2p24.3 02p24.3 2013-05-01 2013-05-01 106480128 ENSG00000251859 NG_045234 +HGNC:48252 RNU6-1289P RNA, U6 small nuclear 1289, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 2013-05-01 2013-05-01 106481587 ENSG00000207160 NG_044321 +HGNC:48253 RNU6-1290P RNA, U6 small nuclear 1290, pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 2013-05-01 2013-05-01 106480129 ENSG00000199827 NG_042910 +HGNC:48254 RNU6-1291P RNA, U6 small nuclear 1291, pseudogene pseudogene pseudogene Approved 14q22.1 14q22.1 2013-05-01 2013-05-01 106481588 ENSG00000252400 NG_044330 +HGNC:48255 RNU6-1292P RNA, U6 small nuclear 1292, pseudogene pseudogene pseudogene Approved 11q14.1 11q14.1 2013-05-01 2013-05-01 106480656 ENSG00000206583 NG_043036 +HGNC:48256 RNU6-1293P RNA, U6 small nuclear 1293, pseudogene pseudogene pseudogene Approved 9q21.11 09q21.11 2013-05-01 2013-05-01 106480130 ENSG00000206804 NG_042915 +HGNC:48257 RNU6-1294P RNA, U6 small nuclear 1294, pseudogene pseudogene pseudogene Approved 3q23 03q23 2013-05-01 2013-05-01 106480131 ENSG00000251804 NG_045248 +HGNC:48259 RNU6-1296P RNA, U6 small nuclear 1296, pseudogene pseudogene pseudogene Approved 5q11.1 05q11.1 2013-05-01 2013-05-01 106480132 ENSG00000206606 NG_042931 +HGNC:48260 RNU6-1297P RNA, U6 small nuclear 1297, pseudogene pseudogene pseudogene Approved 1q22 01q22 2013-05-01 2013-05-01 106480657 ENSG00000207144 NG_043046 +HGNC:48261 RNU6-1298P RNA, U6 small nuclear 1298, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 2013-05-01 2013-05-01 106481590 ENSG00000199326 NG_045157 +HGNC:48262 RNU6-1299P RNA, U6 small nuclear 1299, pseudogene pseudogene pseudogene Approved 6q21 06q21 2013-05-01 2013-05-01 106480133 ENSG00000252125 NG_042940 +HGNC:48263 RNU6-1300P RNA, U6 small nuclear 1300, pseudogene pseudogene pseudogene Approved 8q21.11 08q21.11 2013-05-01 2013-05-01 106480134 ENSG00000212348 NG_042948 +HGNC:48264 RNU6-1301P RNA, U6 small nuclear 1301, pseudogene pseudogene pseudogene Approved 3p22.2 03p22.2 2013-05-01 2013-05-01 106481591 ENSG00000199594 NG_044357 +HGNC:48265 RNU6-1302P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:48266 RNU6-1303P RNA, U6 small nuclear 1303, pseudogene pseudogene pseudogene Approved 9q21.2 09q21.2 2013-05-01 2013-05-01 106481949 ENSG00000201711 NG_045336 +HGNC:48267 RNU6-1304P RNA, U6 small nuclear 1304, pseudogene pseudogene pseudogene Approved 1q42.12 01q42.12 2013-05-01 2013-05-01 106480135 ENSG00000223306 NG_042956 +HGNC:48268 RNU6-1305P RNA, U6 small nuclear 1305, pseudogene pseudogene pseudogene Approved 5p13.2 05p13.2 2013-05-01 2013-05-01 106481592 ENSG00000201223 NG_045814 +HGNC:48269 RNU6-1306P RNA, U6 small nuclear 1306, pseudogene pseudogene pseudogene Approved 11q13.1 11q13.1 2013-05-01 2013-05-01 106480136 ENSG00000202089 NG_042965 +HGNC:48270 RNU6-1307P RNA, U6 small nuclear 1307, pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 2013-05-01 2013-05-01 106481593 ENSG00000212314 NG_044371 +HGNC:48271 RNU6-1308P RNA, U6 small nuclear 1308, pseudogene pseudogene pseudogene Approved 3q13.12 03q13.12 2013-05-01 2013-05-01 106480137 ENSG00000252626 NG_042974 +HGNC:48272 RNU6-1309P RNA, U6 small nuclear 1309, pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 2013-05-01 2013-05-01 106480410 ENSG00000200175 NG_045323 +HGNC:48273 RNU6-1310P RNA, U6 small nuclear 1310, pseudogene pseudogene pseudogene Approved 1q24.2 01q24.2 2013-05-01 2013-05-01 106480658 ENSG00000206880 NG_043055 +HGNC:48274 RNU6-1311P RNA, U6 small nuclear 1311, pseudogene pseudogene pseudogene Approved 5q31.1 05q31.1 2013-05-01 2013-05-01 106480138 ENSG00000207459 NG_042982 +HGNC:48275 RNU6-1312P RNA, U6 small nuclear 1312, pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 2013-05-01 2013-05-01 106481594 ENSG00000199295 NG_044380 +HGNC:48276 RNU6-1313P RNA, U6 small nuclear 1313, pseudogene pseudogene pseudogene Approved 17q21.33 17q21.33 2013-05-01 2013-05-01 106480139 ENSG00000199492 NG_042990 +HGNC:48277 RNU6-1314P RNA, U6 small nuclear 1314, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2013-05-01 2013-05-01 106481595 ENSG00000252948 NG_044389 +HGNC:48278 RNU6-1315P RNA, U6 small nuclear 1315, pseudogene pseudogene pseudogene Approved 12p13.33 12p13.33 2013-05-01 2013-05-01 106481950 ENSG00000252996 NG_043157 +HGNC:48279 RNU6-1316P RNA, U6 small nuclear 1316, pseudogene pseudogene pseudogene Approved 14q32.32 14q32.32 2013-05-01 2013-05-01 106480140 ENSG00000206969 NG_045278 +HGNC:48280 RNU6-1317P RNA, U6 small nuclear 1317, pseudogene pseudogene pseudogene Approved 3q26.31 03q26.31 2013-05-01 2013-05-01 106481596 ENSG00000201452 NG_045827 +HGNC:48281 RNU6-1318P RNA, U6 small nuclear 1318, pseudogene pseudogene pseudogene Approved 1p21.2 01p21.2 2013-05-01 2013-05-01 106480141 ENSG00000202259 NG_043009 +HGNC:48282 RNU6-1319P RNA, U6 small nuclear 1319, pseudogene pseudogene pseudogene Approved 1q42.11 01q42.11 2013-05-01 2013-05-01 106480142 ENSG00000212157 NG_045284 +HGNC:48283 RNU6-1320P RNA, U6 small nuclear 1320, pseudogene pseudogene pseudogene Approved 2q11.1 02q11.1 2013-05-01 2013-05-01 106480659 ENSG00000212140 NG_045299 +HGNC:48284 RNU6-1321P RNA, U6 small nuclear 1321, pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 2013-05-01 2013-05-01 106481597 ENSG00000212207 NG_045832 +HGNC:48285 RNU6-1322P RNA, U6 small nuclear 1322, pseudogene pseudogene pseudogene Approved 7q22.3 07q22.3 2013-05-01 2013-05-01 106480143 ENSG00000201179 NG_045011 +HGNC:48286 RNU6-1323P RNA, U6 small nuclear 1323, pseudogene pseudogene pseudogene Approved Xq23 Xq23 2013-05-01 2013-05-01 106481598 ENSG00000206752 NG_044413 +HGNC:48287 RNU6-1324P RNA, U6 small nuclear 1324, pseudogene pseudogene pseudogene Approved 8q13.1 08q13.1 2013-05-01 2013-05-01 106480144 ENSG00000206949 NG_043034 +HGNC:48288 RNU6-1325P RNA, U6 small nuclear 1325, pseudogene pseudogene pseudogene Approved 4q13.1 04q13.1 2013-05-01 2013-05-01 106480145 ENSG00000201775 NG_043045 +HGNC:48289 RNU6-1326P RNA, U6 small nuclear 1326, pseudogene pseudogene pseudogene Approved 21q21.1 21q21.1 2013-05-01 2013-05-01 106481951 ENSG00000212564 NG_043164 +HGNC:48290 RNU6-1327P RNA, U6 small nuclear 1327, pseudogene pseudogene pseudogene Approved 9p24.3 09p24.3 2013-05-01 2013-05-01 106481599 ENSG00000202172 NG_045838 +HGNC:48291 RNU6-1328P RNA, U6 small nuclear 1328, pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 2013-05-01 2013-05-01 106480146 ENSG00000222870 NG_045014 +HGNC:48292 RNU6-1329P RNA, U6 small nuclear 1329, pseudogene pseudogene pseudogene Approved 12q22 12q22 2013-05-01 2013-05-01 106481600 ENSG00000202534 NG_044431 +HGNC:48293 RNU6-1330P RNA, U6 small nuclear 1330, pseudogene pseudogene pseudogene Approved 5q13.3 05q13.3 2013-05-01 2013-05-01 106480411 ENSG00000199645 NG_043129 +HGNC:48294 RNU6-1331P RNA, U6 small nuclear 1331, pseudogene pseudogene pseudogene Approved 8q11.23 08q11.23 2013-05-01 2013-05-01 106480147 ENSG00000200528 NG_045298 +HGNC:48295 RNU6-1332P RNA, U6 small nuclear 1332, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 2013-05-01 2013-05-01 106480660 ENSG00000252475 NG_045303 +HGNC:48296 RNU6-1333P RNA, U6 small nuclear 1333, pseudogene pseudogene pseudogene Approved 2q37.3 02q37.3 2013-05-01 2013-05-01 106481601 ENSG00000251971 NG_045163 +HGNC:48297 RNU6-1334P RNA, U6 small nuclear 1334, pseudogene pseudogene pseudogene Approved Yp11.31 Yp11.31 2013-05-01 2013-05-01 106480148 ENSG00000251841 NG_043070 +HGNC:48298 RNU6-1335P RNA, U6 small nuclear 1335, pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 2013-05-01 2013-05-01 106480149 ENSG00000202296 NG_043076 +HGNC:48299 RNU6-1336P RNA, U6 small nuclear 1336, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 2013-05-01 2013-05-01 106480661 ENSG00000206613 NG_043077 +HGNC:48300 RNU6-1337P RNA, U6 small nuclear 1337, pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 2013-05-01 2013-05-01 106481602 ENSG00000252334 NG_044445 +HGNC:48301 RNU6-1338P RNA, U6 small nuclear 1338, pseudogene pseudogene pseudogene Approved 6q14.1 06q14.1 2013-05-01 2013-05-01 106480150 ENSG00000252137 NG_043086 +HGNC:48302 RNU6-1339P RNA, U6 small nuclear 1339, pseudogene pseudogene pseudogene Approved 15q25.2 15q25.2 2013-05-01 2013-05-01 106481603 ENSG00000200444 NG_044455 +HGNC:48303 RNU6-1340P RNA, U6 small nuclear 1340, pseudogene pseudogene pseudogene Approved 16p12.3 16p12.3 2013-05-01 2013-05-01 106480151 ENSG00000207167 NG_045313 +HGNC:34017 RNU6ATAC RNA, U6atac small nuclear (U12-dependent splicing) non-coding RNA RNA, small nuclear Approved 9q34.2 09q34.2 RNU6ATAC1 RNA, U6atac small nuclear 1 Small nuclear RNAs 849 2008-03-12 2014-11-19 100151684 ENSG00000221676 uc010nap.2 BX649601 NR_023344 601429 +HGNC:34092 RNU6ATAC2P RNA, U6atac small nuclear 2, pseudogene pseudogene pseudogene Approved 5q11.2 05q11.2 RNA, U6atac small nuclear 2 pseudogene 2008-05-01 2009-11-06 2010-09-17 2014-11-18 100151685 ENSG00000210678 uc063dst.1 NG_007720 +HGNC:34093 RNU6ATAC3P RNA, U6atac small nuclear 3, pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 RNA, U6atac small nuclear 3 pseudogene 2008-05-01 2010-09-17 2014-11-19 100151686 ENSG00000210709 uc060glr.1 NG_007721 +HGNC:34094 RNU6ATAC4P RNA, U6atac small nuclear 4, pseudogene pseudogene pseudogene Approved 3p22.2 03p22.2 RNA, U6atac small nuclear 4 pseudogene 2008-05-01 2010-09-17 2014-11-19 100151687 ENSG00000210181 uc062ibb.1 NG_007722 +HGNC:34095 RNU6ATAC5P RNA, U6atac small nuclear 5, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 RNA, U6atac small nuclear 5 pseudogene 2008-05-01 2010-09-17 2014-11-19 100151688 ENSG00000210839 uc062xfa.1 NG_007723 +HGNC:46905 RNU6ATAC6P RNA, U6atac small nuclear 6, pseudogene pseudogene pseudogene Approved 3p11.1 03p11.1 2013-04-03 2013-04-03 106479545 ENSG00000221059 uc021xbc.1 NG_044367 +HGNC:46906 RNU6ATAC7P RNA, U6atac small nuclear 7, pseudogene pseudogene pseudogene Approved 17q11.2 17q11.2 2013-04-03 2013-04-03 106479546 ENSG00000221038 uc060drr.1 NG_044373 +HGNC:46907 RNU6ATAC8P RNA, U6atac small nuclear 8, pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 2013-04-03 2013-04-03 106481161 ENSG00000221387 uc064pge.1 NG_042978 +HGNC:46908 RNU6ATAC9P RNA, U6atac small nuclear 9, pseudogene pseudogene pseudogene Approved 14q22.2 14q22.2 2013-04-03 2013-04-03 106479547 ENSG00000252019 uc021rtg.1 NG_044383 +HGNC:46909 RNU6ATAC10P RNA, U6atac small nuclear 10, pseudogene pseudogene pseudogene Approved 5q23.3 05q23.3 2013-04-03 2013-04-03 106480540 ENSG00000221562 uc063grb.1 NG_045726 +HGNC:46910 RNU6ATAC11P RNA, U6atac small nuclear 11, pseudogene pseudogene pseudogene Approved 10q11.21 10q11.21 2013-04-03 2013-04-03 106481162 ENSG00000221468 uc057swe.1 NG_042984 +HGNC:46911 RNU6ATAC12P RNA, U6atac small nuclear 12, pseudogene pseudogene pseudogene Approved 11q25 11q25 2013-04-03 2013-04-03 106479548 ENSG00000252351 uc021qsi.1 NG_045825 +HGNC:46912 RNU6ATAC13P RNA, U6atac small nuclear 13, pseudogene pseudogene pseudogene Approved 4q33 04q33 2013-04-03 2013-04-03 106479549 ENSG00000251961 uc063ayk.1 NG_044400 +HGNC:46913 RNU6ATAC14P RNA, U6atac small nuclear 14, pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 2013-04-03 2013-04-03 106481163 ENSG00000252027 uc021vst.1 NG_042992 +HGNC:46914 RNU6ATAC15P RNA, U6atac small nuclear 15, pseudogene pseudogene pseudogene Approved 3q13.13 03q13.13 2013-04-03 2013-04-03 106481867 ENSG00000221206 uc021xce.1 NG_044516 +HGNC:46915 RNU6ATAC16P RNA, U6atac small nuclear 16, pseudogene pseudogene pseudogene Approved 3p21.1 03p21.1 2013-04-03 2013-04-03 106479550 ENSG00000221518 uc021wze.1 NG_044409 +HGNC:46916 RNU6ATAC17P RNA, U6atac small nuclear 17, pseudogene pseudogene pseudogene Approved 20p11.21 20p11.21 2013-04-03 2013-04-03 106481164 ENSG00000251883 uc061vyf.1 NG_043002 +HGNC:46917 RNU6ATAC18P RNA, U6atac small nuclear 18, pseudogene pseudogene pseudogene Approved 1p36.22 01p36.22 2013-04-03 2013-04-03 106479551 ENSG00000221340 uc057cjz.1 NG_044417 +HGNC:46918 RNU6ATAC19P RNA, U6atac small nuclear 19, pseudogene pseudogene pseudogene Approved 2q31.3 02q31.3 2013-04-03 2013-04-03 106481165 ENSG00000221023 uc061qir.1 NG_045010 +HGNC:46919 RNU6ATAC20P RNA, U6atac small nuclear 20, pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 2013-04-03 2013-04-03 106480541 ENSG00000221363 uc060nvk.1 NG_044146 +HGNC:46920 RNU6ATAC21P RNA, U6atac small nuclear 21, pseudogene pseudogene pseudogene Approved 6p24.3 06p24.3 2013-04-03 2013-04-03 106479552 ENSG00000221583 uc063lsy.1 NG_044426 +HGNC:46921 RNU6ATAC22P RNA, U6atac small nuclear 22, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 2013-04-03 2013-04-03 106479553 ENSG00000252603 uc062erz.1 NG_044434 +HGNC:46922 RNU6ATAC23P RNA, U6atac small nuclear 23, pseudogene pseudogene pseudogene Approved Xq27.1 Xq27.1 2013-04-03 2013-04-03 106481166 ENSG00000221375 uc065bjt.1 NG_043019 +HGNC:46923 RNU6ATAC24P RNA, U6atac small nuclear 24, pseudogene pseudogene pseudogene Approved 3q29 03q29 2013-04-03 2013-04-03 106479554 ENSG00000252620 uc021xje.1 NG_045843 +HGNC:46924 RNU6ATAC25P RNA, U6atac small nuclear 25, pseudogene pseudogene pseudogene Approved 16q22.2 16q22.2 2013-04-03 2013-04-03 106480384 ENSG00000221725 uc059wsd.1 NG_042904 +HGNC:46925 RNU6ATAC26P RNA, U6atac small nuclear 26, pseudogene pseudogene pseudogene Approved 3p14.3 03p14.3 2013-04-03 2013-04-03 106480542 ENSG00000210841 uc062kxr.1 NG_044151 +HGNC:46926 RNU6ATAC27P RNA, U6atac small nuclear 27, pseudogene pseudogene pseudogene Approved 1p35.3 01p35.3 2013-04-03 2013-04-03 106481167 ENSG00000221216 uc057dyg.1 NG_045288 +HGNC:46927 RNU6ATAC28P RNA, U6atac small nuclear 28, pseudogene pseudogene pseudogene Approved 14q31.2 14q31.2 2013-04-03 2013-04-03 106479555 ENSG00000238561 uc059dzg.1 NG_044447 +HGNC:46928 RNU6ATAC29P RNA, U6atac small nuclear 29, pseudogene pseudogene pseudogene Approved 3p21.2 03p21.2 2013-04-03 2013-04-03 106481168 ENSG00000221015 uc062kgw.1 NG_043037 +HGNC:46929 RNU6ATAC30P RNA, U6atac small nuclear 30, pseudogene pseudogene pseudogene Approved 14q21.3 14q21.3 2013-04-03 2013-04-03 106481868 ENSG00000221114 uc059bgc.1 NG_044524 +HGNC:46930 RNU6ATAC31P RNA, U6atac small nuclear 31, pseudogene pseudogene pseudogene Approved 4q22.1 04q22.1 2013-04-03 2013-04-03 106481169 ENSG00000221440 uc062yck.1 NG_045013 +HGNC:46931 RNU6ATAC32P RNA, U6atac small nuclear 32, pseudogene pseudogene pseudogene Approved 8q11.23 08q11.23 2013-04-03 2013-04-03 106479556 ENSG00000251835 uc064mwt.1 NG_044457 +HGNC:46932 RNU6ATAC33P RNA, U6atac small nuclear 33, pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 2013-04-03 2013-04-03 106481170 ENSG00000221574 uc057yzv.1 NG_043056 +HGNC:46933 RNU6ATAC34P RNA, U6atac small nuclear 34, pseudogene pseudogene pseudogene Approved 20p11.23 20p11.23 2013-04-03 2013-04-03 106479557 ENSG00000221806 uc061vqz.1 NG_044460 +HGNC:46934 RNU6ATAC35P RNA, U6atac small nuclear 35, pseudogene pseudogene pseudogene Approved 1q41 01q41 2013-04-03 2013-04-03 106481171 ENSG00000221571 uc057por.1 NG_043063 +HGNC:46935 RNU6ATAC36P RNA, U6atac small nuclear 36, pseudogene pseudogene pseudogene Approved 5q13.3 05q13.3 2013-04-03 2013-04-03 106480543 ENSG00000252684 uc063esg.1 NG_044158 +HGNC:46936 RNU6ATAC37P RNA, U6atac small nuclear 37, pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 2013-04-03 2013-04-03 106479558 ENSG00000221255 uc061gkx.1 NG_044469 +HGNC:46937 RNU6ATAC38P RNA, U6atac small nuclear 38, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 2013-04-03 2013-04-03 106479559 ENSG00000221046 uc021wel.1 NG_044477 +HGNC:46938 RNU6ATAC39P RNA, U6atac small nuclear 39, pseudogene pseudogene pseudogene Approved 10p13 10p13 2013-04-03 2013-04-03 106481172 ENSG00000252118 uc057rtd.1 NG_045304 +HGNC:46939 RNU6ATAC40P RNA, U6atac small nuclear 40, pseudogene pseudogene pseudogene Approved 7q35 07q35 2013-04-03 2013-04-03 106479560 ENSG00000221507 uc022aok.1 NG_045171 +HGNC:46940 RNU6ATAC41P RNA, U6atac small nuclear 41, pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 2013-04-03 2013-04-03 106481869 ENSG00000221527 uc064pci.1 NG_044533 +HGNC:46941 RNU6ATAC42P RNA, U6atac small nuclear 42, pseudogene pseudogene pseudogene Approved 12q14.3 12q14.3 2013-04-03 2013-04-03 106481173 ENSG00000221564 uc021qzx.1 NG_045308 +HGNC:10230 RNU6V RNA, U6 small nuclear variant sequence with SNRPE pseudogene sequence pseudogene pseudogene Approved 1p13 01p13 "87U6|LH87" 1995-12-18 2010-03-12 6071 ENSG00000206832 uc031ukx.2 X54048 NG_009877 1829158 +HGNC:34033 RNU7-1 RNA, U7 small nuclear 1 non-coding RNA RNA, small nuclear Approved 12p13.31 12p13.31 U7.1 RNA, small nuclear U7.1 RNU7 "RNA, small nuclear U7|RNA, U7 small nuclear" Small nuclear RNAs 849 2008-03-21 2010-09-14 2010-09-14 2014-11-19 100147744 ENSG00000238923 uc031yrw.1 NR_023317 18267300 +HGNC:34098 RNU7-2P RNA, U7 small nuclear 2 pseudogene pseudogene pseudogene Approved 2q22.3 02q22.3 U7.2 2008-05-08 2008-05-08 2015-03-04 100147745 ENSG00000251905 uc061olq.1 NG_007583 18267300 +HGNC:34099 RNU7-3P RNA, U7 small nuclear 3 pseudogene pseudogene pseudogene Approved 6q25.1 06q25.1 U7.3 2008-05-08 2008-05-08 2014-11-18 100147746 ENSG00000252244 uc063seh.1 NG_007584 18267300 +HGNC:34100 RNU7-4P RNA, U7 small nuclear 4 pseudogene pseudogene pseudogene Approved 12q15 12q15 U7.4 RNU7-132P RNA, U7 small nuclear 132 pseudogene 2008-05-08 2008-05-08 2014-11-19 100147747 ENSG00000252770 uc058qsy.1 NG_007585 18267300 +HGNC:34101 RNU7-5P RNA, U7 small nuclear 5 pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 U7.5 2008-05-08 2008-05-08 2015-01-29 100147748 NG_007586 18267300 +HGNC:34102 RNU7-6P RNA, U7 small nuclear 6 pseudogene pseudogene pseudogene Approved 20q13.2 20q13.2 U7.6 2008-05-08 2008-05-08 2014-11-18 100147749 ENSG00000252654 uc061xto.1 NG_007587 18267300 +HGNC:34103 RNU7-7P RNA, U7 small nuclear 7 pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 U7.7 2008-05-08 2014-11-18 100147755 ENSG00000238606 uc064yoe.1 NG_007594 18267300 +HGNC:34104 RNU7-8P RNA, U7 small nuclear 8 pseudogene pseudogene pseudogene Approved 1p31.1 01p31.1 U7.8 RNU7-139P RNA, U7 small nuclear 139 pseudogene 2008-05-08 2014-11-19 100147756 ENSG00000251767 uc057htk.1 NG_007595 18267300 +HGNC:34105 RNU7-9P RNA, U7 small nuclear 9 pseudogene pseudogene pseudogene Approved 2q36.3 02q36.3 U7.9 2008-05-08 2014-11-19 100147757 ENSG00000238782 uc021vxv.1 NG_007596 18267300 +HGNC:34106 RNU7-10P RNA, U7 small nuclear 10 pseudogene pseudogene pseudogene Approved 3p24.3 03p24.3 U7.10 2008-05-08 2015-02-05 100147758 ENSG00000271841 uc062hgt.1 NG_007597 18267300 +HGNC:34107 RNU7-11P RNA, U7 small nuclear 11 pseudogene pseudogene pseudogene Approved 4p14 04p14 U7.11 2008-05-08 2014-11-18 100147759 ENSG00000252796 uc062wbo.1 NG_007598 18267300 +HGNC:34108 RNU7-12P RNA, U7 small nuclear 12 pseudogene pseudogene pseudogene Approved 10p12.1 10p12.1 U7.12 RNU7-100P RNA, U7 small nuclear 100 pseudogene 2008-05-08 2014-11-19 100147760 ENSG00000251839 uc057sjy.1 NG_007599 18267300 +HGNC:34109 RNU7-13P RNA, U7 small nuclear 13 pseudogene pseudogene pseudogene Approved 1q25.3 01q25.3 U7.13 2008-05-08 2014-11-18 100147761 ENSG00000252222 uc057nxh.1 NG_007600 18267300 +HGNC:34110 RNU7-14P RNA, U7 small nuclear 14 pseudogene pseudogene pseudogene Approved 20q13.2 20q13.2 U7.14 2008-05-08 2014-11-18 100147762 ENSG00000238468 uc061xux.1 NG_007601 18267300 +HGNC:34111 RNU7-15P RNA, U7 small nuclear 15 pseudogene pseudogene pseudogene Approved 5q31.1 05q31.1 U7.15 2008-05-08 2014-11-18 100147763 NG_007602 18267300 +HGNC:34112 RNU7-16P RNA, U7 small nuclear 16 pseudogene pseudogene pseudogene Approved 7q32.1 07q32.1 U7.16 2008-05-08 2015-01-29 100147764 NG_007603 18267300 +HGNC:34113 RNU7-17P RNA, U7 small nuclear 17 pseudogene pseudogene pseudogene Approved 18q11.2 18q11.2 U7.17 2008-05-08 2014-11-19 100147765 NG_007604 18267300 +HGNC:34114 RNU7-18P RNA, U7 small nuclear 18 pseudogene pseudogene pseudogene Approved 3q29 03q29 U7.18 RNU7-142P RNA, U7 small nuclear 142 pseudogene 2008-05-08 2014-11-18 100147766 ENSG00000252174 uc062rzp.1 NG_007605 18267300 +HGNC:34115 RNU7-19P RNA, U7 small nuclear 19 pseudogene pseudogene pseudogene Approved 3p13 03p13 U7.19 2008-05-08 2014-11-18 100147767 ENSG00000238959 uc062lnw.1 NG_007606 18267300 +HGNC:34116 RNU7-20P RNA, U7 small nuclear 20 pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 U7.20 2008-05-08 2014-11-18 100147768 ENSG00000251712 uc064hbg.1 NG_007607 18267300 +HGNC:34117 RNU7-21P RNA, U7 small nuclear 21 pseudogene pseudogene pseudogene Approved 9q34.13 09q34.13 U7.21 2008-05-08 2014-11-19 100147769 ENSG00000238558 uc064wta.1 NG_007608 18267300 +HGNC:34118 RNU7-22P RNA, U7 small nuclear 22 pseudogene pseudogene pseudogene Approved 10p11.22 10p11.22 U7.22 2008-05-08 2014-11-19 100147770 ENSG00000252482 uc057spi.1 NG_007609 18267300 +HGNC:34119 RNU7-23P RNA, U7 small nuclear 23 pseudogene pseudogene pseudogene Approved 11q13.2 11q13.2 U7.23 2008-05-08 2014-11-18 100147771 ENSG00000239099 uc058ece.1 NG_007610 18267300 +HGNC:34120 RNU7-24P RNA, U7 small nuclear 24 pseudogene pseudogene pseudogene Approved 16p12.1 16p12.1 "U7.24|HSU7.25" RNU7P3 RNA, small nuclear U7 pseudogene 3 2008-05-08 2014-11-19 6074 ENSG00000239081 uc059sev.1 M35539 NG_007611 "18267300|2249787" +HGNC:34121 RNU7-25P RNA, U7 small nuclear 25 pseudogene pseudogene pseudogene Approved 18p11.31 18p11.31 U7.25 2008-05-08 2014-11-18 100147812 ENSG00000252353 uc060mxc.1 NG_007619 18267300 +HGNC:34122 RNU7-26P RNA, U7 small nuclear 26 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 U7.26 2008-05-08 2014-11-19 100147813 ENSG00000238610 uc063mkj.1 NG_007620 18267300 +HGNC:34123 RNU7-27P RNA, U7 small nuclear 27 pseudogene pseudogene pseudogene Approved 7q32.1 07q32.1 U7.27 2008-05-08 2014-11-18 100147814 ENSG00000238750 uc064htk.1 NG_007621 18267300 +HGNC:34124 RNU7-28P RNA, U7 small nuclear 28 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 U7.28 2008-05-08 2014-11-18 100147815 ENSG00000252568 uc057yze.1 NG_007622 18267300 +HGNC:34125 RNU7-29P RNA, U7 small nuclear 29 pseudogene pseudogene pseudogene Approved 1p35.3 01p35.3 U7.29 2008-05-08 2014-11-19 100147816 ENSG00000252429 uc057dta.1 NG_007623 18267300 +HGNC:34126 RNU7-30P RNA, U7 small nuclear 30 pseudogene pseudogene pseudogene Approved 14q32.11 14q32.11 U7.30 2008-05-08 2014-11-19 100147817 ENSG00000252644 uc059eie.1 NG_007624 18267300 +HGNC:34127 RNU7-31P RNA, U7 small nuclear 31 pseudogene pseudogene pseudogene Approved 17p13.2 17p13.2 U7.31 2008-05-08 2015-01-29 100147818 NG_007625 18267300 +HGNC:34128 RNU7-32P RNA, U7 small nuclear 32 pseudogene pseudogene pseudogene Approved 3q26.2 03q26.2 U7.32 2008-05-08 2014-11-19 100147819 NG_007626 18267300 +HGNC:34129 RNU7-33P RNA, U7 small nuclear 33 pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 U7.33 2008-05-08 2014-11-18 100147820 NG_007627 18267300 +HGNC:34130 RNU7-34P RNA, U7 small nuclear 34 pseudogene pseudogene pseudogene Approved 5q23.1 05q23.1 U7.34 2008-05-08 2014-11-19 100147821 ENSG00000238904 uc063ggf.1 NG_007628 18267300 +HGNC:34131 RNU7-35P RNA, U7 small nuclear 35 pseudogene pseudogene pseudogene Approved 7p14.1 07p14.1 U7.35 2008-05-08 2014-11-19 100147822 ENSG00000252983 uc064dcd.1 NG_007629 18267300 +HGNC:34132 RNU7-36P RNA, U7 small nuclear 36 pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 U7.36 RNU7-112P RNA, U7 small nuclear 112 pseudogene 2008-05-08 2015-01-29 100147823 NG_007630 18267300 +HGNC:34133 RNU7-37P RNA, U7 small nuclear 37 pseudogene pseudogene pseudogene Approved Xp11.22 Xp11.22 U7.37 2008-05-08 2014-11-19 100147824 ENSG00000251707 uc065axr.1 NG_007631 18267300 +HGNC:34134 RNU7-38P RNA, U7 small nuclear 38 pseudogene pseudogene pseudogene Approved 10q22.1 10q22.1 U7.38 2008-05-08 2014-11-18 100147825 ENSG00000238446 uc057twx.1 NG_007632 18267300 +HGNC:34135 RNU7-39P RNA, U7 small nuclear 39 pseudogene pseudogene pseudogene Approved 12q13.12 12q13.12 U7.39 2008-05-08 2014-11-18 100147826 NG_007633 18267300 +HGNC:34136 RNU7-40P RNA, U7 small nuclear 40 pseudogene pseudogene pseudogene Approved 12q13.3 12q13.3 U7.40 2008-05-08 2014-11-18 100147827 ENSG00000252206 uc058pnx.1 NG_007634 18267300 +HGNC:34137 RNU7-41P RNA, U7 small nuclear 41 pseudogene pseudogene pseudogene Approved 14q13.2 14q13.2 U7.41 2008-05-08 2014-11-18 100147828 ENSG00000251726 uc059asp.1 NG_007635 18267300 +HGNC:34138 RNU7-42P RNA, U7 small nuclear 42 pseudogene pseudogene pseudogene Approved 16q22.1 16q22.1 U7.42 2008-05-08 2014-11-19 100147829 NG_007636 18267300 +HGNC:34139 RNU7-43P RNA, U7 small nuclear 43 pseudogene pseudogene pseudogene Approved 17p13.1 17p13.1 U7.43 RNU7-118P RNA, U7 small nuclear 118 pseudogene 2008-05-08 2014-11-18 100147830 ENSG00000252363 uc060bcl.1 NG_007637 18267300 +HGNC:34140 RNU7-44P RNA, U7 small nuclear 44 pseudogene pseudogene pseudogene Approved 2q31.1 02q31.1 U7.44 2008-05-08 2014-11-19 100147831 NG_007638 18267300 +HGNC:34141 RNU7-45P RNA, U7 small nuclear 45 pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 U7.45 2008-05-08 2014-11-18 100147832 ENSG00000238829 uc061rjc.1 NG_007639 18267300 +HGNC:34142 RNU7-46P RNA, U7 small nuclear 46 pseudogene pseudogene pseudogene Approved 2q11.2 02q11.2 U7.46 2008-05-08 2014-11-19 100147833 ENSG00000238830 uc061mez.1 NG_007640 18267300 +HGNC:34143 RNU7-47P RNA, U7 small nuclear 47 pseudogene pseudogene pseudogene Approved 3q23 03q23 U7.47 2008-05-08 2014-11-19 100147834 ENSG00000251787 uc062opo.1 NG_007641 18267300 +HGNC:34144 RNU7-48P RNA, U7 small nuclear 48 pseudogene pseudogene pseudogene Approved 6q13 06q13 U7.48 2008-05-08 2014-11-18 100147835 ENSG00000238386 uc063pkx.1 NG_007642 18267300 +HGNC:34145 RNU7-49P RNA, U7 small nuclear 49 pseudogene pseudogene pseudogene Approved 11p15.2 11p15.2 U7.49 2008-05-08 2014-11-19 100147836 ENSG00000251991 uc021qee.1 NG_007643 18267300 +HGNC:34146 RNU7-50P RNA, U7 small nuclear 50 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 U7.50 2008-05-08 2014-11-19 100147837 ENSG00000238304 uc057ydg.1 NG_007644 18267300 +HGNC:34147 RNU7-51P RNA, U7 small nuclear 51 pseudogene pseudogene pseudogene Approved 14q31.1 14q31.1 U7.51 2008-05-08 2014-11-19 100151647 ENSG00000252369 uc059dzf.1 NG_007669 18267300 +HGNC:34148 RNU7-52P RNA, U7 small nuclear 52 pseudogene pseudogene pseudogene Approved 17q23.2 17q23.2 U7.52 2008-05-08 2014-11-18 100151648 ENSG00000251981 uc060ikv.1 NG_007670 18267300 +HGNC:34149 RNU7-53P RNA, U7 small nuclear 53 pseudogene pseudogene pseudogene Approved 5q23.3 05q23.3 U7.53 2008-05-08 2014-11-18 100151649 ENSG00000252514 uc063gre.1 NG_007671 18267300 +HGNC:34150 RNU7-54P RNA, U7 small nuclear 54 pseudogene pseudogene pseudogene Approved 7q32.1 07q32.1 U7.54 2008-05-08 2014-11-19 100151650 ENSG00000238590 uc064huc.1 NG_007672 18267300 +HGNC:10239 RNU7-55P RNA, U7 small nuclear 55 pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 "HSU7.36|U7.55" RNU7P4 RNA, small nuclear U7 pseudogene 4 1991-11-29 2008-05-13 2008-05-13 2014-11-18 6075 ENSG00000239078 uc064kcu.1 M35540 NG_001191 "2249787|18267300" +HGNC:34152 RNU7-56P RNA, U7 small nuclear 56 pseudogene pseudogene pseudogene Approved Xp22.2 Xp22.2 U7.56 2008-05-08 2014-11-18 100151651 ENSG00000238709 uc064ydy.1 NG_007673 18267300 +HGNC:34153 RNU7-57P RNA, U7 small nuclear 57 pseudogene pseudogene pseudogene Approved 1q21.3 01q21.3 U7.57 2008-05-08 2014-11-19 100151652 ENSG00000238365 uc057nld.1 NG_007674 18267300 +HGNC:34154 RNU7-58P RNA, U7 small nuclear 58 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 U7.58 2008-05-08 2015-01-29 100151653 NG_007675 18267300 +HGNC:34155 RNU7-59P RNA, U7 small nuclear 59 pseudogene pseudogene pseudogene Approved 11q14.1 11q14.1 U7.59 2008-05-08 2014-11-19 100151654 ENSG00000238880 uc058fts.1 NG_007676 18267300 +HGNC:34156 RNU7-60P RNA, U7 small nuclear 60 pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 U7.60 2008-05-08 2014-11-18 100151655 ENSG00000251747 uc058lhi.1 NG_007677 18267300 +HGNC:34157 RNU7-61P RNA, U7 small nuclear 61 pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 U7.61 2008-05-08 2014-11-18 100151656 ENSG00000251706 uc059tex.1 NG_007678 18267300 +HGNC:34158 RNU7-62P RNA, U7 small nuclear 62 pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 U7.62 2008-05-08 2014-11-18 100151657 ENSG00000238653 uc057hfz.1 NG_007679 18267300 +HGNC:34159 RNU7-63P RNA, U7 small nuclear 63 pseudogene pseudogene pseudogene Approved 16p13.2 16p13.2 U7.63 2008-05-08 2014-11-19 100151658 ENSG00000238417 uc059qop.1 NG_007680 18267300 +HGNC:34160 RNU7-64P RNA, U7 small nuclear 64 pseudogene pseudogene pseudogene Approved 2p11.2 02p11.2 U7.64 2008-05-08 2015-01-29 100151662 NG_007681 18267300 +HGNC:34161 RNU7-65P RNA, U7 small nuclear 65 pseudogene pseudogene pseudogene Approved 6p12.3 06p12.3 U7.65 2008-05-08 2014-11-18 100151663 ENSG00000252457 uc021zah.1 NG_007682 18267300 +HGNC:34162 RNU7-66P RNA, U7 small nuclear 66 pseudogene pseudogene pseudogene Approved 6q12 06q12 U7.66 2008-05-08 2014-11-18 100151664 ENSG00000238949 uc063pje.1 NG_007683 18267300 +HGNC:34163 RNU7-67P RNA, U7 small nuclear 67 pseudogene pseudogene pseudogene Approved 8q22.3 08q22.3 U7.67 2008-05-08 2014-11-18 100151665 ENSG00000239115 uc064pdx.1 NG_007684 18267300 +HGNC:10236 RNU7-68P RNA, U7 small nuclear 68 pseudogene pseudogene pseudogene Approved Xq24 Xq24 "HSU7.732A|U7.68" RNU7P1 RNA, small nuclear U7 pseudogene 1 1991-11-29 2008-05-13 2008-05-13 2014-11-19 6072 M35537 NG_001188 "2249787|18267300" +HGNC:34165 RNU7-69P RNA, U7 small nuclear 69 pseudogene pseudogene pseudogene Approved Xq25 Xq25 U7.69 2008-05-08 2014-11-19 100151666 ENSG00000252178 uc065azj.1 NG_007685 18267300 +HGNC:34166 RNU7-70P RNA, U7 small nuclear 70 pseudogene pseudogene pseudogene Approved 1p13.2 01p13.2 U7.70 2008-05-08 2014-11-18 100151667 ENSG00000252750 uc057jle.1 NG_007686 18267300 +HGNC:34167 RNU7-71P RNA, U7 small nuclear 71 pseudogene pseudogene pseudogene Approved 16q22.2 16q22.2 U7.71 2008-05-08 2014-11-19 100151668 ENSG00000251868 uc021tle.1 NG_007687 18267300 +HGNC:34168 RNU7-72P RNA, U7 small nuclear 72 pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 U7.72 2008-05-08 2015-01-29 100151669 NG_007688 18267300 +HGNC:34169 RNU7-73P RNA, U7 small nuclear 73 pseudogene pseudogene pseudogene Approved 3p22.2 03p22.2 U7.73 2008-05-08 2014-11-19 100151670 ENSG00000239105 uc062idg.1 NG_007689 18267300 +HGNC:34170 RNU7-74P RNA, U7 small nuclear 74 pseudogene pseudogene pseudogene Approved 4p14 04p14 U7.74 2008-05-08 2014-11-19 100151671 ENSG00000239010 uc062wdf.1 NG_007690 18267300 +HGNC:34171 RNU7-75P RNA, U7 small nuclear 75 pseudogene pseudogene pseudogene Approved 5p13.2 05p13.2 U7.75 2008-05-08 2014-11-19 100151672 ENSG00000251880 uc063dbp.1 NG_007691 18267300 +HGNC:34172 RNU7-76P RNA, U7 small nuclear 76 pseudogene pseudogene pseudogene Approved 7p12.3 07p12.3 U7.76 2008-05-08 2015-01-29 100151673 NG_007692 18267300 +HGNC:34173 RNU7-77P RNA, U7 small nuclear 77 pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 U7.77 2008-05-08 2014-11-19 100151674 ENSG00000253054 uc057sss.1 NG_007693 18267300 +HGNC:34174 RNU7-78P RNA, U7 small nuclear 78 pseudogene pseudogene pseudogene Approved 1q25.1 01q25.1 U7.78 2008-05-08 2014-11-19 100151675 NG_007694 18267300 +HGNC:34175 RNU7-79P RNA, U7 small nuclear 79 pseudogene pseudogene pseudogene Approved 15q25.3 15q25.3 U7.79 2008-05-08 2014-11-19 100151676 ENSG00000251891 uc059muf.1 NG_007695 18267300 +HGNC:34176 RNU7-80P RNA, U7 small nuclear 80 pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 U7.80 2008-05-08 2014-11-19 100151677 ENSG00000238778 uc021oop.1 NG_007696 18267300 +HGNC:34177 RNU7-81P RNA, U7 small nuclear 81 pseudogene pseudogene pseudogene Approved 2p16.1 02p16.1 U7.81 2008-05-08 2014-11-19 100151678 ENSG00000252507 uc021vhq.1 NG_007697 18267300 +HGNC:34178 RNU7-82P RNA, U7 small nuclear 82 pseudogene pseudogene pseudogene Approved 3q26.1 03q26.1 U7.82 RNU7-163P RNA, U7 small nuclear 163 pseudogene 2008-05-08 2016-02-03 100151679 ENSG00000238924 NG_007698 18267300 +HGNC:34179 RNU7-83P RNA, U7 small nuclear 83 pseudogene pseudogene pseudogene Approved 7q31.1 07q31.1 U7.83 2008-05-08 2014-11-19 100151680 NG_007699 18267300 +HGNC:34180 RNU7-84P RNA, U7 small nuclear 84 pseudogene pseudogene pseudogene Approved 8q23.1 08q23.1 U7.84 2008-05-08 2014-11-18 100151681 ENSG00000251892 uc064plw.1 NG_007700 18267300 +HGNC:34181 RNU7-85P RNA, U7 small nuclear 85 pseudogene pseudogene pseudogene Approved 8q21.13 08q21.13 U7.85 2008-05-08 2014-11-18 100151682 ENSG00000238884 uc064nwq.1 NG_007701 18267300 +HGNC:10237 RNU7-86P RNA, U7 small nuclear 86 pseudogene pseudogene pseudogene Approved Xq24 Xq24 HSU7.7/32B RNU7P2 RNA, small nuclear U7 pseudogene 2 1991-11-29 2008-08-11 2008-08-11 2013-03-15 6073 M35538 NG_001189 2249787 +HGNC:42616 RNU7-87P RNA, U7 small nuclear 87 pseudogene pseudogene pseudogene Approved 13q21.32 13q21.32 2011-08-08 2011-08-08 100873842 ENSG00000238500 uc021rkh.1 NG_032622 +HGNC:42617 RNU7-88P RNA, U7 small nuclear 88 pseudogene pseudogene pseudogene Approved 13q21.2 13q21.2 2011-08-08 2011-08-08 100873843 ENSG00000239003 uc058xii.1 NG_032623 +HGNC:42618 RNU7-89P RNA, U7 small nuclear 89 pseudogene pseudogene pseudogene Approved 13q22.1 13q22.1 2011-08-08 2012-10-03 100873844 NG_032624 +HGNC:45624 RNU7-90P RNA, U7 small nuclear 90 pseudogene pseudogene pseudogene Approved 16q22.2 16q22.2 2013-03-19 2013-03-19 106479060 ENSG00000238731 uc059wzz.1 NG_044579 +HGNC:45625 RNU7-91P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45626 RNU7-92P RNA, U7 small nuclear 92 pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 2013-03-19 2013-03-19 106479061 ENSG00000238785 uc061xor.1 NG_044588 +HGNC:45627 RNU7-93P RNA, U7 small nuclear 93 pseudogene pseudogene pseudogene Approved 14q13.3 14q13.3 2013-03-19 2013-03-19 106480813 ENSG00000238540 uc059awx.1 NG_044266 +HGNC:45628 RNU7-94P RNA, U7 small nuclear 94 pseudogene pseudogene pseudogene Approved 12q23.3 12q23.3 2013-03-19 2013-03-19 106481799 ENSG00000238609 uc058srb.1 NG_043974 +HGNC:45629 RNU7-95P RNA, U7 small nuclear 95 pseudogene pseudogene pseudogene Approved 1p32.3 01p32.3 2013-03-19 2013-03-19 106479062 ENSG00000239007 uc057gry.1 NG_045905 +HGNC:45630 RNU7-96P RNA, U7 small nuclear 96 pseudogene pseudogene pseudogene Approved 2q11.2 02q11.2 2013-03-19 2013-03-19 106480361 ENSG00000238719 uc061mcv.1 NG_045195 +HGNC:45631 RNU7-97P RNA, U7 small nuclear 97 pseudogene pseudogene pseudogene Approved 17q21.2 17q21.2 2013-03-19 2013-03-19 106479063 ENSG00000238704 uc060fis.1 NG_044606 +HGNC:45632 RNU7-98P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45633 RNU7-99P RNA, U7 small nuclear 99 pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 2013-03-19 2013-03-19 106480814 ENSG00000252080 uc059qmw.1 NG_045789 +HGNC:45635 RNU7-101P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45636 RNU7-102P RNA, U7 small nuclear 102 pseudogene pseudogene pseudogene Approved 8q13.2 08q13.2 2013-03-19 2013-03-19 106479064 ENSG00000238808 uc064nnb.1 NG_044616 +HGNC:45637 RNU7-103P RNA, U7 small nuclear 103 pseudogene pseudogene pseudogene Approved 12p13.33 12p13.33 2013-03-19 2013-03-19 107063544 ENSG00000238370 uc058jpp.1 NG_046362 +HGNC:45638 RNU7-104P RNA, U7 small nuclear 104 pseudogene pseudogene pseudogene Approved 2q31.2 02q31.2 2013-03-19 2013-03-19 106480448 ENSG00000238542 uc061qfz.1 NG_045050 +HGNC:45639 RNU7-105P RNA, U7 small nuclear 105 pseudogene pseudogene pseudogene Approved 11q13.4 11q13.4 2013-03-19 2013-03-19 106479065 ENSG00000251919 uc021qmy.1 NG_044623 +HGNC:45640 RNU7-106P RNA, U7 small nuclear 106 pseudogene pseudogene pseudogene Approved 12q21.31 12q21.31 2013-03-19 2013-03-19 106479066 ENSG00000238842 uc021raz.1 NG_044631 +HGNC:45641 RNU7-107P RNA, U7 small nuclear 107 pseudogene pseudogene pseudogene Approved 10q11.23 10q11.23 2013-03-19 2013-03-19 106479067 ENSG00000238523 uc057tgq.1 NG_045921 +HGNC:45642 RNU7-108P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45643 RNU7-109P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45644 RNU7-110P RNA, U7 small nuclear 110 pseudogene pseudogene pseudogene Approved 3p22.3 03p22.3 2013-03-19 2013-03-19 106480815 ENSG00000252700 uc062hxw.1 NG_044285 +HGNC:45645 RNU7-111P RNA, U7 small nuclear 111 pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 2013-03-19 2013-03-19 106481800 ENSG00000252645 uc059ncy.1 NG_043981 +HGNC:45647 RNU7-113P RNA, U7 small nuclear 113 pseudogene pseudogene pseudogene Approved 2p24.1 02p24.1 2013-03-19 2013-03-19 106479068 ENSG00000238735 uc061gym.1 NG_045186 +HGNC:45648 RNU7-114P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45649 RNU7-115P RNA, U7 small nuclear 115 pseudogene pseudogene pseudogene Approved 17q24.1 17q24.1 2013-03-19 2013-03-19 106479069 ENSG00000252242 uc060ixy.1 NG_045931 +HGNC:45650 RNU7-116P RNA, U7 small nuclear 116 pseudogene pseudogene pseudogene Approved 14q23.2 14q23.2 2013-03-19 2013-03-19 106480816 ENSG00000252749 uc059cib.1 NG_044294 +HGNC:45651 RNU7-117P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45653 RNU7-119P RNA, U7 small nuclear 119 pseudogene pseudogene pseudogene Approved 3p13 03p13 2013-03-19 2013-03-19 106479070 ENSG00000239119 uc062lok.1 NG_045935 +HGNC:45654 RNU7-120P RNA, U7 small nuclear 120 pseudogene pseudogene pseudogene Approved 12q21.33 12q21.33 2013-03-19 2013-03-19 106480817 ENSG00000238302 uc058ron.1 NG_044302 +HGNC:45655 RNU7-121P RNA, U7 small nuclear 121 pseudogene pseudogene pseudogene Approved 1p34.2 01p34.2 2013-03-19 2013-03-19 106480449 ENSG00000252413 uc057fcg.1 NG_043448 +HGNC:45656 RNU7-122P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45657 RNU7-123P RNA, U7 small nuclear 123 pseudogene pseudogene pseudogene Approved 1p31.3 01p31.3 2013-03-19 2013-03-19 106479071 ENSG00000251720 uc057hfe.1 NG_044666 +HGNC:45658 RNU7-124P RNA, U7 small nuclear 124 pseudogene pseudogene pseudogene Approved 9p13.2 09p13.2 2013-03-19 2013-03-19 106479072 ENSG00000251745 uc064tds.1 NG_045945 +HGNC:45659 RNU7-125P RNA, U7 small nuclear 125 pseudogene pseudogene pseudogene Approved 16p13.12 16p13.12 RNU7-135P RNA, U7 small nuclear 135 pseudogene 2013-03-19 2016-02-10 106480818 ENSG00000238964 uc059rbh.1 NG_045798 +HGNC:45660 RNU7-126P RNA, U7 small nuclear 126 pseudogene pseudogene pseudogene Approved 4p15.2 04p15.2 2013-03-19 2013-03-19 106479073 ENSG00000238632 uc062vrn.1 NG_044679 +HGNC:45661 RNU7-127P RNA, U7 small nuclear 127 pseudogene pseudogene pseudogene Approved 2q37.2 02q37.2 2013-03-19 2013-03-19 106480362 ENSG00000238812 uc021vyr.1 NG_045972 +HGNC:45662 RNU7-128P RNA, U7 small nuclear 128 pseudogene pseudogene pseudogene Approved 3p21.31 03p21.31 2013-03-19 2013-03-19 106480819 ENSG00000253056 uc062jfx.1 NG_044319 +HGNC:45663 RNU7-129P RNA, U7 small nuclear 129 pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 2013-03-19 2013-03-19 106480450 ENSG00000251937 uc060nng.1 NG_043457 +HGNC:45664 RNU7-130P RNA, U7 small nuclear 130 pseudogene pseudogene pseudogene Approved 5p13.2 05p13.2 2013-03-19 2013-03-19 106479074 ENSG00000238441 uc063cyf.1 NG_044689 +HGNC:45665 RNU7-131P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45667 RNU7-133P RNA, U7 small nuclear 133 pseudogene pseudogene pseudogene Approved 6p23 06p23 2013-03-19 2013-03-19 106479075 ENSG00000238987 uc063lzd.1 NG_044698 +HGNC:45668 RNU7-134P RNA, U7 small nuclear 134 pseudogene pseudogene pseudogene Approved 17q22 17q22 2013-03-19 2013-03-19 106480820 ENSG00000238447 uc060hvh.1 NG_044328 +HGNC:45670 RNU7-136P RNA, U7 small nuclear 136 pseudogene pseudogene pseudogene Approved 3q25.33 03q25.33 2013-03-19 2013-03-19 106479076 ENSG00000238427 uc062ppd.1 NG_044708 +HGNC:45671 RNU7-137P RNA, U7 small nuclear 137 pseudogene pseudogene pseudogene Approved 20p11.23 20p11.23 2013-03-19 2013-03-19 106480821 ENSG00000252597 uc061vpg.1 NG_044336 +HGNC:45672 RNU7-138P RNA, U7 small nuclear 138 pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 2013-03-19 2013-03-19 106481801 ENSG00000239053 uc061gqx.1 NG_045671 +HGNC:45674 RNU7-140P RNA, U7 small nuclear 140 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 2013-03-19 2013-03-19 106479077 ENSG00000238364 uc060tji.1 NG_044716 +HGNC:45675 RNU7-141P RNA, U7 small nuclear 141 pseudogene pseudogene pseudogene Approved 20q13.33 20q13.33 2013-03-19 2013-03-19 106480822 ENSG00000238777 uc061yeq.1 NG_044346 +HGNC:45677 RNU7-143P RNA, U7 small nuclear 143 pseudogene pseudogene pseudogene Approved 7p15.3 07p15.3 2013-03-19 2013-03-19 106479078 ENSG00000252590 uc064caq.1 NG_044725 +HGNC:45678 RNU7-144P RNA, U7 small nuclear 144 pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 2013-03-19 2013-03-19 106479079 ENSG00000238452 uc061xpc.1 NG_044736 +HGNC:45679 RNU7-145P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45680 RNU7-146P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45681 RNU7-147P RNA, U7 small nuclear 147 pseudogene pseudogene pseudogene Approved 2q33.1 02q33.1 2013-03-19 2013-03-19 106480451 ENSG00000238698 uc061rav.1 NG_043464 +HGNC:45682 RNU7-148P RNA, U7 small nuclear 148 pseudogene pseudogene pseudogene Approved 2q24.3 02q24.3 2013-03-19 2013-03-19 106480823 ENSG00000238357 uc061pfy.1 NG_044354 +HGNC:45683 RNU7-149P RNA, U7 small nuclear 149 pseudogene pseudogene pseudogene Approved 4q23 04q23 2013-03-19 2013-03-19 106479080 ENSG00000252548 uc062yjf.1 NG_044742 +HGNC:45684 RNU7-150P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45685 RNU7-151P RNA, U7 small nuclear 151 pseudogene pseudogene pseudogene Approved 4q24 04q24 2013-03-19 2013-03-19 106480824 ENSG00000252739 uc062ypw.1 NG_045812 +HGNC:45686 RNU7-152P RNA, U7 small nuclear 152 pseudogene pseudogene pseudogene Approved 6q25.3 06q25.3 2013-03-19 2013-03-19 106479081 ENSG00000238789 uc063slx.1 NG_044750 +HGNC:45687 RNU7-153P RNA, U7 small nuclear 153 pseudogene pseudogene pseudogene Approved 8p22 08p22 2013-03-19 2013-03-19 106479082 ENSG00000252264 uc022asf.1 NG_044760 +HGNC:45688 RNU7-154P RNA, U7 small nuclear 154 pseudogene pseudogene pseudogene Approved 7q31.32 07q31.32 2013-03-19 2013-03-19 106481802 ENSG00000252003 uc022ako.1 NG_045118 +HGNC:45689 RNU7-155P RNA, U7 small nuclear 155 pseudogene pseudogene pseudogene Approved 17q24.3 17q24.3 2013-03-19 2013-03-19 106480825 ENSG00000238759 uc060jjb.1 NG_044368 +HGNC:45690 RNU7-156P RNA, U7 small nuclear 156 pseudogene pseudogene pseudogene Approved 5q31.3 05q31.3 2013-03-19 2013-03-19 106479083 ENSG00000253023 uc063igl.1 NG_044768 +HGNC:45691 RNU7-157P RNA, U7 small nuclear 157 pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 2013-03-19 2013-03-19 106480826 ENSG00000238431 uc064dwc.1 NG_044377 +HGNC:45692 RNU7-158P RNA, U7 small nuclear 158 pseudogene pseudogene pseudogene Approved 4q35.1 04q35.1 2013-03-19 2013-03-19 106479084 ENSG00000252702 uc063bga.1 NG_044776 +HGNC:45693 RNU7-159P RNA, U7 small nuclear 159 pseudogene pseudogene pseudogene Approved 11q22.2 11q22.2 2013-03-19 2013-03-19 106481747 ENSG00000238562 uc058gwg.1 NG_043597 +HGNC:45694 RNU7-160P RNA, U7 small nuclear 160 pseudogene pseudogene pseudogene Approved 14q32.33 14q32.33 2013-03-19 2013-03-19 106479085 ENSG00000252469 uc059frn.1 NG_044783 +HGNC:45695 RNU7-161P RNA, U7 small nuclear 161 pseudogene pseudogene pseudogene Approved 5p13.1 05p13.1 2013-03-19 2013-03-19 106480452 ENSG00000253098 uc021xxs.1 NG_043471 +HGNC:45696 RNU7-162P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45698 RNU7-164P RNA, U7 small nuclear 164 pseudogene pseudogene pseudogene Approved Xp11.4 Xp11.4 2013-03-19 2013-03-19 106479086 ENSG00000238730 uc064ypa.1 NG_044794 +HGNC:45699 RNU7-165P RNA, U7 small nuclear 165 pseudogene pseudogene pseudogene Approved 10q25.3 10q25.3 2013-03-19 2013-03-19 106479087 ENSG00000238380 uc057wbo.1 NG_044801 +HGNC:45700 RNU7-166P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45701 RNU7-167P RNA, U7 small nuclear 167 pseudogene pseudogene pseudogene Approved 22q12.3 22q12.3 2013-03-19 2013-03-19 106479088 ENSG00000238584 uc062dpv.1 NG_044809 +HGNC:45702 RNU7-168P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45703 RNU7-169P RNA, U7 small nuclear 169 pseudogene pseudogene pseudogene Approved 12q24.11 12q24.11 2013-03-19 2013-03-19 106480827 ENSG00000238457 uc058swb.1 NG_044387 +HGNC:45704 RNU7-170P RNA, U7 small nuclear 170 pseudogene pseudogene pseudogene Approved 12q24.31 12q24.31 2013-03-19 2013-03-19 106480453 ENSG00000239082 uc058ujz.1 NG_045465 +HGNC:45705 RNU7-171P RNA, U7 small nuclear 171 pseudogene pseudogene pseudogene Approved 9q34.11 09q34.11 2013-03-19 2013-03-19 106479089 ENSG00000238406 uc022bok.1 NG_044818 +HGNC:45706 RNU7-172P RNA, U7 small nuclear 172 pseudogene pseudogene pseudogene Approved 2p16.2 02p16.2 2013-03-19 2013-03-19 106480828 ENSG00000252934 uc061jeb.1 NG_044396 +HGNC:45707 RNU7-173P RNA, U7 small nuclear 173 pseudogene pseudogene pseudogene Approved 20q13.13 20q13.13 2013-03-19 2013-03-19 106479090 ENSG00000238950 uc061xop.1 NG_044826 +HGNC:45708 RNU7-174P RNA, U7 small nuclear 174 pseudogene pseudogene pseudogene Approved 8q12.1 08q12.1 2013-03-19 2013-03-19 106480829 ENSG00000252057 uc064nyl.1 NG_044404 +HGNC:45709 RNU7-175P RNA, U7 small nuclear 175 pseudogene pseudogene pseudogene Approved 5q13.3 05q13.3 2013-03-19 2013-03-19 106479091 ENSG00000251724 uc063eqi.1 NG_044834 +HGNC:45710 RNU7-176P RNA, U7 small nuclear 176 pseudogene pseudogene pseudogene Approved 2p25.1 02p25.1 2013-03-19 2013-03-19 106481803 ENSG00000238962 uc061grc.1 NG_045119 +HGNC:45711 RNU7-177P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45712 RNU7-178P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45713 RNU7-179P RNA, U7 small nuclear 179 pseudogene pseudogene pseudogene Approved 1p36.21 01p36.21 2013-03-19 2013-03-19 106479092 ENSG00000252417 uc057coe.1 NG_044842 +HGNC:45714 RNU7-180P RNA, U7 small nuclear 180 pseudogene pseudogene pseudogene Approved 5q32 05q32 2013-03-19 2013-03-19 106480830 ENSG00000238374 uc063ihz.1 NG_044411 +HGNC:45715 RNU7-181P RNA, U7 small nuclear 181 pseudogene pseudogene pseudogene Approved 8q24.21 08q24.21 2013-03-19 2013-03-19 106479093 ENSG00000253043 uc064qgg.1 NG_044851 +HGNC:45716 RNU7-182P RNA, U7 small nuclear 182 pseudogene pseudogene pseudogene Approved 2q14.3 02q14.3 2013-03-19 2013-03-19 106480831 ENSG00000238788 uc061nnq.1 NG_045160 +HGNC:45717 RNU7-183P RNA, U7 small nuclear 183 pseudogene pseudogene pseudogene Approved 1q25.3 01q25.3 2013-03-19 2013-03-19 106480454 ENSG00000252407 uc057nyf.1 NG_043483 +HGNC:45718 RNU7-184P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45719 RNU7-185P RNA, U7 small nuclear 185 pseudogene pseudogene pseudogene Approved 9p24.1 09p24.1 2013-03-19 2013-03-19 106479094 ENSG00000239102 uc064sco.1 NG_044861 +HGNC:45720 RNU7-186P RNA, U7 small nuclear 186 pseudogene pseudogene pseudogene Approved 17q21.32 17q21.32 2013-03-19 2013-03-19 106480363 ENSG00000238419 uc060gno.1 NG_044771 +HGNC:45721 RNU7-187P RNA, U7 small nuclear 187 pseudogene pseudogene pseudogene Approved 11q23.2 11q23.2 2013-03-19 2013-03-19 106479095 ENSG00000238998 uc021qqq.1 NG_046015 +HGNC:45722 RNU7-188P RNA, U7 small nuclear 188 pseudogene pseudogene pseudogene Approved 7q21.3 07q21.3 2013-03-19 2013-03-19 106480832 ENSG00000252872 uc064fok.1 NG_045161 +HGNC:45723 RNU7-189P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45724 RNU7-190P RNA, U7 small nuclear 190 pseudogene pseudogene pseudogene Approved 2q14.1 02q14.1 2013-03-19 2013-03-19 106479096 ENSG00000239185 uc021vng.1 NG_044874 +HGNC:45725 RNU7-191P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45726 RNU7-192P RNA, U7 small nuclear 192 pseudogene pseudogene pseudogene Approved 4q35.2 04q35.2 2013-03-19 2013-03-19 106480833 ENSG00000252275 uc063bql.1 NG_044438 +HGNC:45727 RNU7-193P RNA, U7 small nuclear 193 pseudogene pseudogene pseudogene Approved 10q11.21 10q11.21 2013-03-19 2013-03-19 106481804 ENSG00000252532 uc057swr.1 NG_045682 +HGNC:45728 RNU7-194P RNA, U7 small nuclear 194 pseudogene pseudogene pseudogene Approved 4q31.3 04q31.3 2013-03-19 2013-03-19 106480834 ENSG00000238721 uc063adt.1 NG_045846 +HGNC:45729 RNU7-195P RNA, U7 small nuclear 195 pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 2013-03-19 2013-03-19 106479097 ENSG00000239151 uc059mzj.1 NG_046023 +HGNC:45730 RNU7-196P RNA, U7 small nuclear 196 pseudogene pseudogene pseudogene Approved 5q13.2 05q13.2 2013-03-19 2013-03-19 106479098 ENSG00000238913 uc063enp.1 NG_044891 +HGNC:45731 RNU7-197P RNA, U7 small nuclear 197 pseudogene pseudogene pseudogene Approved 4q31.23 04q31.23 2013-03-19 2013-03-19 106480455 ENSG00000239168 uc063ade.1 NG_043490 +HGNC:45732 RNU7-198P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45733 RNU7-199P entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:45734 RNU7-200P RNA, U7 small nuclear 200 pseudogene pseudogene pseudogene Approved 1p36.12 01p36.12 2013-03-19 2013-03-19 106480835 ENSG00000251914 uc057dal.1 NG_044452 +HGNC:10108 RNU11 RNA, U11 small nuclear non-coding RNA RNA, small nuclear Approved 1p35.3 01p35.3 "U11|RNU11-1" Small nuclear RNAs 849 1999-12-14 2015-01-27 26824 ENSG00000274978 OTTHUMG00000183994 uc009vtj.2 X58716 NR_004407 2973606 MGI:2148804 +HGNC:46942 RNU11-2P RNA, U11 small nuclear 2, pseudogene pseudogene pseudogene Approved 17p12 17p12 2013-04-03 2013-04-03 106479561 ENSG00000252707 uc021tqf.1 NG_044491 +HGNC:46943 RNU11-3P RNA, U11 small nuclear 3, pseudogene pseudogene pseudogene Approved 10q24.33 10q24.33 2013-04-03 2013-04-03 106479562 ENSG00000212413 uc057vsn.1 NG_045873 +HGNC:46944 RNU11-4P RNA, U11 small nuclear 4, pseudogene pseudogene pseudogene Approved 8q24.21 08q24.21 2013-04-03 2013-04-03 106481174 ENSG00000212451 uc064qda.1 NG_043089 +HGNC:46945 RNU11-5P RNA, U11 small nuclear 5, pseudogene pseudogene pseudogene Approved 14q12 14q12 2013-04-03 2013-04-03 106479563 ENSG00000212518 uc059akp.1 NG_044509 +HGNC:46946 RNU11-6P RNA, U11 small nuclear 6, pseudogene pseudogene pseudogene Approved 8q21.13 08q21.13 2013-04-03 2013-04-03 106480544 ENSG00000212429 uc064nyt.1 NG_045741 +HGNC:19380 RNU12 RNA, U12 small nuclear non-coding RNA RNA, small nuclear Approved 22q13.2 22q13.2 RNU12-1 RNA, U12 small nuclear 1 RNU12P RNA, U12 small nuclear pseudogene Small nuclear RNAs 849 2002-10-30 2009-11-04 2009-11-04 2015-01-30 267010 ENSG00000276027 OTTHUMG00000183993 uc062ewf.1 L43846 NR_029422 7489523 +HGNC:10109 RNU12-2P RNA, U12 small nuclear 2, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 U12 "RNU12|RNU12P" "RNA, U12 small nuclear|RNA, U12 small nuclear pseudogene" 1999-12-14 2009-11-06 2011-04-15 2014-11-19 26823 ENSG00000201659 uc064ytu.1 L43845 NG_013273 7489523 +HGNC:17130 RNU86 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-09-05 +HGNC:10103 RNU105B RNA, U105B small nucleolar non-coding RNA RNA, small nucleolar Approved 20p12.3 20p12.3 E1-2 1999-12-14 2014-11-19 26767 ENSG00000201348 uc032pac.2 U12207 NR_004386 +HGNC:10104 RNU105C RNA, U105C small nucleolar non-coding RNA RNA, small nucleolar Approved 8q11.23 08q11.23 "E1-5|E1-6|U105C" 1999-12-14 2014-11-18 26766 ENSG00000199212 uc033blq.2 U12208 NR_004385 +HGNC:10133 RNVU1-1 RNA, variant U1 small nuclear 1 non-coding RNA RNA, small nuclear Approved 1q21.1 01q21.1 "vU1.1|U1P14|U1.4|vU1.10|RNU1-53" "RNU1P10|RNU1-10P|RNVU1-10" "RNA, U1 small nuclear pseudogene 10|RNA, U1 small nuclear 10, pseudogene|RNA, variant U1 small nuclear 10" Small nuclear RNAs 849 1999-12-14 2013-05-02 2013-05-02 2015-02-05 101954273 ENSG00000207340 M25188 NR_104082 "6085956|23070852" +HGNC:48308 RNVU1-2 RNA, variant U1 small nuclear 2 non-coding RNA RNA, small nuclear Approved 1q21.1 01q21.1 "vU1.2|RNU1-71" Small nuclear RNAs 849 2013-04-25 2013-05-15 ENSG00000252135 JQ988795 23070852 +HGNC:48311 RNVU1-3 RNA, variant U1 small nuclear 3 non-coding RNA RNA, small nuclear Approved 1q21.1 01q21.1 "vU1.3|RNU1-113|vU1.12|RNU1-151" RNVU1-12 RNA, variant U1 small nuclear 12 Small nuclear RNAs 849 2013-04-25 2015-01-29 101954272 ENSG00000201183 NR_104081 23070852 +HGNC:48312 RNVU1-4 RNA, variant U1 small nuclear 4 non-coding RNA RNA, small nuclear Approved 1q21.1 01q21.1 "vU1.4|RNU1-102|vU1.5|RNU1-50" RNVU1-5 RNA, variant U1 small nuclear 5 Small nuclear RNAs 849 2013-04-25 2015-02-06 101954264 ENSG00000277610 NR_104073 23070852 +HGNC:48314 RNVU1-6 RNA, variant U1 small nuclear 6 non-coding RNA RNA, small nuclear Approved 1q21.1 01q21.1 "vU1.6|RNU1-99" Small nuclear RNAs 849 2013-04-25 2013-05-15 101954276 ENSG00000201558 NR_104085 23070852 +HGNC:37500 RNVU1-7 RNA, variant U1 small nuclear 7 non-coding RNA RNA, small nuclear Approved 1q21.1 01q21.1 "vU1.7|vU1.9" "RNU1-9|RNU1-9P|RNVU1-9|RNU1-6P|RNU1-26P" "RNA, U1 small nuclear 9|RNA, U1 small nuclear 9, pseudogene|RNA, variant U1 small nuclear 9|RNA, U1 small nuclear 6, pseudogene|RNA, U1 small nuclear 26, pseudogene" Small nuclear RNAs 849 2009-04-25 2013-05-02 2013-05-02 2015-02-06 26864 ENSG00000206585 JQ988801 NR_004426 23070852 +HGNC:48315 RNVU1-8 RNA, variant U1 small nuclear 8 non-coding RNA RNA, small nuclear Approved 1q21.1 01q21.1 "vU1.8|RNU1-145" Small nuclear RNAs 849 2013-04-25 2013-05-15 101447996 ENSG00000201142 JQ988802 NR_121645 23070852 +HGNC:10134 RNVU1-11 RNA, variant U1 small nuclear 11 non-coding RNA RNA, small nuclear Approved 1q21.2 01q21.2 "vU1.11|U1P2A" "RNU1P2|RNU1-12P" "RNA, U1 small nuclear pseudogene 2|RNA, U1 small nuclear 12, pseudogene" Small nuclear RNAs 849 2001-06-22 2013-05-02 2013-05-02 2015-02-05 6063 JQ988805 NG_001184 "3837185|23070852" +HGNC:48319 RNVU1-14 RNA, variant U1 small nuclear 14 non-coding RNA RNA, small nuclear Approved 1q21.2 01q21.2 "vU1.14|RNU1-37" Small nuclear RNAs 849 2013-04-25 2013-05-15 101954266 ENSG00000207501 NR_104075 23070852 +HGNC:48320 RNVU1-15 RNA, variant U1 small nuclear 15 non-coding RNA RNA, small nuclear Approved 1q21.2 01q21.2 "vU1.15|RNU1-66|vU1.16|RNU1-121" RNVU1-16 RNA, variant U1 small nuclear 16 Small nuclear RNAs 849 2013-04-25 2014-11-19 101954267 ENSG00000207205 NR_104076 23070852 +HGNC:48322 RNVU1-17 RNA, variant U1 small nuclear 17 non-coding RNA RNA, small nuclear Approved 1q21.2 01q21.2 "vU1.17|RNU1-127" Small nuclear RNAs 849 2013-04-25 2013-05-15 101954269 ENSG00000207349 NR_104078 23070852 +HGNC:37496 RNVU1-18 RNA, variant U1 small nuclear 18 non-coding RNA RNA, small nuclear Approved 1q21.2 01q21.2 "vU1.18|U1P101|U1P15|U1.15" "RNU1P1|RNU1-5|RNU1-25|RNU1-25P" "RNA, U1 small nuclear pseudogene 1|RNA, U1 small nuclear 5|RNA, U1 small nuclear 25|RNA, U1 small nuclear 25, pseudogene" Small nuclear RNAs 849 2009-11-05 2013-05-02 2013-05-02 2014-11-18 26863 ENSG00000206737 JQ988812 NR_004400 23070852 +HGNC:48324 RNVU1-19 RNA, variant U1 small nuclear 19 non-coding RNA RNA, small nuclear Approved 1q21.2 01q21.2 "vU1.19|RNU1-126|vU1.13|RNU1-147" RNVU1-13 RNA, variant U1 small nuclear 13 Small nuclear RNAs 849 2013-04-25 2015-02-06 101954277 ENSG00000275538 NR_104086 23070852 +HGNC:48325 RNVU1-20 RNA, variant U1 small nuclear 20 non-coding RNA RNA, small nuclear Approved 1q21.2 not on reference assembly 01q21.2 not on reference assembly "vU1.20|RNU1-110" Small nuclear RNAs 849 2013-04-25 2015-01-29 101954268 NR_125392 23070852 +HGNC:10242 RNY1 RNA, Ro-associated Y1 non-coding RNA RNA, Y Approved 7q36 07q36 hY1 RNA, Y1 small cytoplasmic (associated with Ro protein) RNAs, Ro-associated Y 853 1993-08-25 2008-03-26 2013-05-03 6084 ENSG00000201098 uc033apb.1 V00584 NR_004391 6187471 MGI:97995 601821 +HGNC:42478 RNY1P1 RNA, Ro-associated Y1 pseudogene 1 pseudogene pseudogene Approved 13q12.2 13q12.2 2011-08-02 2014-11-19 100873802 ENSG00000201242 uc058wat.1 NG_032587 +HGNC:42479 RNY1P2 RNA, Ro-associated Y1 pseudogene 2 pseudogene pseudogene Approved 13q33.1 13q33.1 2011-08-02 2014-11-19 100862666 ENSG00000201690 uc058ybr.1 NG_008317 +HGNC:42480 RNY1P3 RNA, Ro-associated Y1 pseudogene 3 pseudogene pseudogene Approved 13q12.13 13q12.13 2011-08-02 2014-11-19 100873803 ENSG00000223158 uc058vzf.1 NG_032588 +HGNC:42481 RNY1P4 RNA, Ro-associated Y1 pseudogene 4 pseudogene pseudogene Approved 13q13.1 13q13.1 2011-08-02 2014-11-19 100873804 ENSG00000207325 uc058wgx.1 NG_032589 +HGNC:42482 RNY1P5 RNA, Ro-associated Y1 pseudogene 5 pseudogene pseudogene Approved 13q22.1 13q22.1 2011-08-02 2014-11-19 100862667 ENSG00000206617 uc058xlr.1 NG_032098 +HGNC:42483 RNY1P6 RNA, Ro-associated Y1 pseudogene 6 pseudogene pseudogene Approved 13q14.3 13q14.3 2011-08-02 2014-11-19 100873805 ENSG00000206920 uc058xfi.1 NG_032590 +HGNC:42484 RNY1P7 RNA, Ro-associated Y1 pseudogene 7 pseudogene pseudogene Approved 13q12.12 13q12.12 2011-08-02 2014-11-19 100873806 ENSG00000207474 uc058vya.1 NG_032591 +HGNC:42485 RNY1P8 RNA, Ro-associated Y1 pseudogene 8 pseudogene pseudogene Approved 13q22.1 13q22.1 2011-08-02 2014-11-19 100873807 ENSG00000206697 uc058xlh.1 NG_032592 +HGNC:41481 RNY1P9 RNA, Ro-associated Y1 pseudogene 9 pseudogene pseudogene Approved 22q11.21 22q11.21 "KLHL22-IT1|RNYP1" "KLHL22 intronic transcript 1 (non-protein coding)|RNA, Ro-associated Y, pseudogene 1" 2011-08-03 2014-07-18 2014-07-18 2014-11-18 100874358 ENSG00000255156 OTTHUMG00000165837 NG_033992 +HGNC:50873 RNY1P10 RNA, Ro-associated Y1 pseudogene 10 pseudogene pseudogene Approved 16p12.1 16p12.1 2014-07-18 2014-07-18 106480308 ENSG00000200138 NG_044326 +HGNC:50874 RNY1P11 RNA, Ro-associated Y1 pseudogene 11 pseudogene pseudogene Approved 7q32.1 07q32.1 2014-07-18 2014-07-18 106481710 ENSG00000200629 NG_045391 +HGNC:50875 RNY1P12 RNA, Ro-associated Y1 pseudogene 12 pseudogene pseudogene Approved 3q12.3 03q12.3 2014-07-18 2014-07-18 106480309 ENSG00000201121 NG_045806 +HGNC:50876 RNY1P13 RNA, Ro-associated Y1 pseudogene 13 pseudogene pseudogene Approved 1p13.2 01p13.2 2014-07-18 2014-07-18 106480310 ENSG00000201900 NG_044344 +HGNC:50877 RNY1P14 RNA, Ro-associated Y1 pseudogene 14 pseudogene pseudogene Approved 4q31.21 04q31.21 2014-07-18 2014-07-18 106480311 ENSG00000207155 NG_045809 +HGNC:50878 RNY1P15 RNA, Ro-associated Y1 pseudogene 15 pseudogene pseudogene Approved 9q33.2 09q33.2 2014-07-18 2014-07-18 106481711 ENSG00000222351 NG_043306 +HGNC:50879 RNY1P16 RNA, Ro-associated Y1 pseudogene 16 pseudogene pseudogene Approved 12q23.2 12q23.2 2014-07-18 2014-07-18 106480312 ENSG00000199933 NG_045811 +HGNC:10243 RNY3 RNA, Ro-associated Y3 non-coding RNA RNA, Y Approved 7q36 07q36 hY3 RNA, Y3 small cytoplasmic (associated with Ro protein) RNAs, Ro-associated Y 853 1993-08-25 2008-03-26 2013-05-03 6085 ENSG00000202354 uc033aoz.1 V00585 NR_004392 6187471 601822 +HGNC:42477 RNY3P1 RNA, Ro-associated Y3 pseudogene 1 pseudogene pseudogene Approved 5q14.1 05q14.1 2011-08-01 2011-08-01 2014-11-19 106478984 ENSG00000201955 uc032vaj.2 NG_043975 +HGNC:42486 RNY3P2 RNA, Ro-associated Y3 pseudogene 2 pseudogene pseudogene Approved 13q14.2 13q14.2 2011-08-02 2014-11-19 100862668 ENSG00000199788 uc032aff.2 NG_032099 +HGNC:42487 RNY3P3 RNA, Ro-associated Y3 pseudogene 3 pseudogene pseudogene Approved 13q22.3 13q22.3 2011-08-02 2014-11-19 100862669 ENSG00000200686 uc058xqp.1 NG_032100 +HGNC:42488 RNY3P4 RNA, Ro-associated Y3 pseudogene 4 pseudogene pseudogene Approved 13q12.12 13q12.12 2011-08-02 2014-11-19 100873808 ENSG00000207157 uc058vwr.1 NG_032593 +HGNC:42489 RNY3P5 RNA, Ro-associated Y3 pseudogene 5 pseudogene pseudogene Approved 13q21.2 13q21.2 2011-08-02 2014-11-19 100873809 ENSG00000206854 uc021rkf.3 NG_032594 +HGNC:42490 RNY3P6 RNA, Ro-associated Y3 pseudogene 6 pseudogene pseudogene Approved 13q32.3 13q32.3 2011-08-02 2015-01-29 100873810 NG_032595 +HGNC:42491 RNY3P7 RNA, Ro-associated Y3 pseudogene 7 pseudogene pseudogene Approved 13q22.3 13q22.3 2011-08-02 2014-11-19 100862670 ENSG00000206800 uc058xpj.1 NG_032101 +HGNC:42492 RNY3P8 RNA, Ro-associated Y3 pseudogene 8 pseudogene pseudogene Approved 13q32.1 13q32.1 2011-08-02 2014-11-19 106478985 ENSG00000223298 uc032amk.2 NG_043982 +HGNC:42493 RNY3P9 RNA, Ro-associated Y3 pseudogene 9 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-08-02 2014-11-19 100862672 ENSG00000207458 uc058wos.1 NG_032102 +HGNC:42494 RNY3P10 RNA, Ro-associated Y3 pseudogene 10 pseudogene pseudogene Approved 13q21.33 13q21.33 2011-08-02 2014-11-19 100873820 ENSG00000207495 uc058xkd.1 NG_032600 +HGNC:50887 RNY3P11 RNA, Ro-associated Y3 pseudogene 11 pseudogene pseudogene Approved 6q21 06q21 2014-07-18 2014-07-18 106481713 ENSG00000201023 NG_045401 +HGNC:50888 RNY3P12 RNA, Ro-associated Y3 pseudogene 12 pseudogene pseudogene Approved 10q23.33 10q23.33 2014-07-18 2014-07-18 106480315 ENSG00000202297 NG_045823 +HGNC:50889 RNY3P13 RNA, Ro-associated Y3 pseudogene 13 pseudogene pseudogene Approved 3q22.1 03q22.1 2014-07-18 2014-07-18 106481714 ENSG00000202412 NG_043332 +HGNC:50893 RNY3P14 RNA, Ro-associated Y3 pseudogene 14 pseudogene pseudogene Approved 8q13.3 08q13.3 2014-07-18 2014-07-18 106480316 ENSG00000207036 NG_044394 +HGNC:50890 RNY3P15 RNA, Ro-associated Y3 pseudogene 15 pseudogene pseudogene Approved 6p21.31 06p21.31 2014-07-18 2014-07-18 107178919 ENSG00000252106 NG_046709 +HGNC:50891 RNY3P16 RNA, Ro-associated Y3 pseudogene 16 pseudogene pseudogene Approved Xq24 Xq24 2014-07-18 2014-07-18 106480686 ENSG00000252147 NG_045036 +HGNC:10244 RNY4 RNA, Ro-associated Y4 non-coding RNA RNA, Y Approved 7q36.1 07q36.1 HY4 RNA, Y4 small cytoplasmic (associated with Ro protein) RNAs, Ro-associated Y 853 1993-08-25 2008-03-26 2013-05-03 6086 ENSG00000252316 uc033aoy.1 L32608 NR_004393 7520568 601823 +HGNC:10245 RNY4P1 RNA, Ro-associated Y4 pseudogene 1 pseudogene pseudogene Approved 9q21.13 09q21.13 hY4.B8 RNA, Y4 small cytoplasmic (associated with Ro protein) pseudogene 1 1993-08-25 2008-03-26 2015-01-29 6087 M77131 NG_005036 1378808 +HGNC:10246 RNY4P2 RNA, Ro-associated Y4 pseudogene 2 pseudogene pseudogene Approved 17q21.31 17q21.31 hY4.B7 RNA, Y4 small cytoplasmic (associated with Ro protein) pseudogene 2 1993-08-25 2008-03-26 2015-01-29 6088 M77130 NG_005037 +HGNC:10247 RNY4P3 RNA, Ro-associated Y4 pseudogene 3 pseudogene pseudogene Approved 16q12.1 16q12.1 hY4.F2 RNA, Y4 small cytoplasmic (associated with Ro protein) pseudogene 3 1993-08-25 2008-03-26 2011-06-13 6089 ENSG00000202124 uc059tzx.1 M77132 NG_005038 +HGNC:34050 RNY4P4 RNA, Ro-associated Y4 pseudogene 4 pseudogene pseudogene Approved 3q22.3 03q22.3 2008-04-03 2015-01-29 100379297 NG_016629 +HGNC:34052 RNY4P5 RNA, Ro-associated Y4 pseudogene 5 pseudogene pseudogene Approved 8q24.13 08q24.13 2008-04-03 2015-01-29 100379299 NG_016631 +HGNC:34055 RNY4P6 RNA, Ro-associated Y4 pseudogene 6 pseudogene pseudogene Approved 11q23.3 11q23.3 2008-04-03 2011-08-01 100379287 ENSG00000200537 uc058hrp.1 NG_016611 +HGNC:34056 RNY4P7 RNA, Ro-associated Y4 pseudogene 7 pseudogene pseudogene Approved 2q14.3 02q14.3 2008-04-03 2010-03-18 100169850 ENSG00000201470 uc032obl.2 NG_008007 +HGNC:34057 RNY4P8 RNA, Ro-associated Y4 pseudogene 8 pseudogene pseudogene Approved 17q21.2 17q21.2 2008-04-03 2015-01-29 100379295 NR_033356 +HGNC:34058 RNY4P9 RNA, Ro-associated Y4 pseudogene 9 pseudogene pseudogene Approved 13q14.3 13q14.3 2008-04-03 2014-07-18 100379300 ENSG00000200064 uc058xat.1 NG_016632 +HGNC:34060 RNY4P10 RNA, Ro-associated Y4 pseudogene 10 pseudogene pseudogene Approved 6p21.3 06p21.3 2008-04-04 2011-08-01 100379592 ENSG00000202441 uc021ywi.2 NG_016642 +HGNC:34061 RNY4P11 RNA, Ro-associated Y4 pseudogene 11 pseudogene pseudogene Approved 20p11.23 20p11.23 2008-04-04 2015-01-29 100379288 NG_016612 +HGNC:34062 RNY4P12 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-04-03 +HGNC:34063 RNY4P13 RNA, Ro-associated Y4 pseudogene 13 pseudogene pseudogene Approved 17q11.2 17q11.2 2008-04-04 2011-08-01 100379296 ENSG00000207011 OTTHUMG00000179920 uc060dls.1 NG_016628 +HGNC:34064 RNY4P14 RNA, Ro-associated Y4 pseudogene 14 pseudogene pseudogene Approved 13q13.3 13q13.3 2008-04-04 2011-03-28 100379584 ENSG00000200526 uc058woo.1 NG_016641 +HGNC:34065 RNY4P15 RNA, Ro-associated Y4 pseudogene 15 pseudogene pseudogene Approved 2p11.2 02p11.2 2008-04-04 2015-01-29 100379291 NG_016613 +HGNC:34066 RNY4P16 RNA, Ro-associated Y4 pseudogene 16 pseudogene pseudogene Approved 1q42.11 01q42.11 2008-04-04 2011-08-01 100431173 ENSG00000201638 uc057qmn.1 NG_021236 +HGNC:34067 RNY4P17 RNA, Ro-associated Y4 pseudogene 17 pseudogene pseudogene Approved 4q32.3 04q32.3 2008-04-04 2011-08-01 100379564 ENSG00000201818 uc021xui.1 NG_016640 +HGNC:34068 RNY4P18 RNA, Ro-associated Y4 pseudogene 18 pseudogene pseudogene Approved 9q31.3 09q31.3 2008-04-04 2011-08-01 100379298 ENSG00000212409 uc064var.1 NG_016630 +HGNC:34069 RNY4P19 RNA, Ro-associated Y4 pseudogene 19 pseudogene pseudogene Approved 2q36.3 02q36.3 2008-04-04 2010-03-18 100169834 ENSG00000199400 uc061thw.1 NG_007997 +HGNC:34070 RNY4P20 RNA, Ro-associated Y4 pseudogene 20 pseudogene pseudogene Approved 6q25.1 06q25.1 2008-04-04 2011-08-01 100379378 ENSG00000252487 uc032xoy.2 NG_016636 +HGNC:42471 RNY4P21 RNA, Ro-associated Y4 pseudogene 21 pseudogene pseudogene Approved 14q24.3 14q24.3 2011-08-01 2011-08-01 2014-11-19 100862663 NG_032094 +HGNC:42472 RNY4P22 RNA, Ro-associated Y4 pseudogene 22 pseudogene pseudogene Approved 3p24.3 03p24.3 2011-08-01 2015-02-06 100873800 NG_032585 +HGNC:42473 RNY4P23 RNA, Ro-associated Y4 pseudogene 23 pseudogene pseudogene Approved Xq13.1 Xq13.1 2011-08-01 2014-11-19 100873801 ENSG00000201377 uc064zsp.1 NG_032586 +HGNC:42474 RNY4P24 RNA, Ro-associated Y4 pseudogene 24 pseudogene pseudogene Approved 13q14.3 13q14.3 2011-08-01 2014-11-19 100862664 ENSG00000199605 uc058xgp.1 NG_032095 +HGNC:42475 RNY4P25 RNA, Ro-associated Y4 pseudogene 25 pseudogene pseudogene Approved 1q21.3 01q21.3 2011-08-01 2014-11-19 100862665 ENSG00000238711 uc057kwx.1 NG_032096 +HGNC:42476 RNY4P26 RNA, Ro-associated Y4 pseudogene 26 pseudogene pseudogene Approved 10q23.33 10q23.33 2011-08-01 2011-08-01 2015-02-06 100873819 NG_032599 +HGNC:42495 RNY4P27 RNA, Ro-associated Y4 pseudogene 27 pseudogene pseudogene Approved 13q32.1 13q32.1 2011-08-02 2014-11-19 100873821 ENSG00000200211 uc032aml.2 NG_032601 +HGNC:42496 RNY4P28 RNA, Ro-associated Y4 pseudogene 28 pseudogene pseudogene Approved 13q21.2 13q21.2 2011-08-02 2014-11-19 100873822 ENSG00000202151 uc058xim.1 NG_032602 +HGNC:42497 RNY4P29 RNA, Ro-associated Y4 pseudogene 29 pseudogene pseudogene Approved 13q21.1 13q21.1 2011-08-02 2014-11-19 100873823 ENSG00000222733 uc058xig.1 NG_032603 +HGNC:42498 RNY4P30 RNA, Ro-associated Y4 pseudogene 30 pseudogene pseudogene Approved 13q14.2 13q14.2 2011-08-02 2014-11-19 100862673 ENSG00000222148 uc058xas.1 NG_032103 +HGNC:42499 RNY4P31 RNA, Ro-associated Y4 pseudogene 31 pseudogene pseudogene Approved 13q21.2 13q21.2 2011-08-02 2015-02-06 100862674 NG_032104 +HGNC:50880 RNY4P32 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:50881 RNY4P33 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:50882 RNY4P34 RNA, Ro-associated Y4 pseudogene 34 pseudogene pseudogene Approved 2q33.1 02q33.1 2014-07-18 2014-07-18 106481712 ENSG00000201649 NG_045038 +HGNC:50883 RNY4P35 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-04 +HGNC:50884 RNY4P36 RNA, Ro-associated Y4 pseudogene 36 pseudogene pseudogene Approved 17q25.1 17q25.1 2014-07-18 2014-07-18 106480313 ENSG00000212418 NG_045818 +HGNC:50885 RNY4P37 RNA, Ro-associated Y4 pseudogene 37 pseudogene pseudogene Approved 18q21.1 18q21.1 2014-07-18 2014-07-18 106480314 ENSG00000252034 NG_044375 +HGNC:10248 RNY5 RNA, Ro-associated Y5 non-coding RNA RNA, Y Approved 7q36 07q36 RNA, Y5 small cytoplasmic (associated with Ro protein) RNAs, Ro-associated Y 853 1994-12-12 2008-03-26 2015-01-29 6090 U64824 NR_001571 7520568 601824 +HGNC:34082 RNY5P1 RNA, Ro-associated Y5 pseudogene 1 pseudogene pseudogene Approved 1p34.3 01p34.3 2008-05-01 2015-01-29 100379666 NG_016725 +HGNC:34083 RNY5P2 RNA, Ro-associated Y5 pseudogene 2 pseudogene pseudogene Approved 2q33.1 02q33.1 2008-05-01 2012-10-03 100381208 NG_016767 +HGNC:34084 RNY5P3 RNA, Ro-associated Y5 pseudogene 3 pseudogene pseudogene Approved 3q26.2 03q26.2 2008-05-01 2015-01-29 100379664 NG_016720 +HGNC:34085 RNY5P4 RNA, Ro-associated Y5 pseudogene 4 pseudogene pseudogene Approved 4q28.2 04q28.2 2008-05-01 2015-01-29 100380271 NG_016727 +HGNC:34086 RNY5P5 RNA, Ro-associated Y5 pseudogene 5 pseudogene pseudogene Approved 6p22.3 06p22.3 2008-05-01 2015-01-29 100379658 NG_016705 +HGNC:34087 RNY5P6 RNA, Ro-associated Y5 pseudogene 6 pseudogene pseudogene Approved 8p11.21 08p11.21 2008-05-01 2012-10-03 100379663 NG_016719 +HGNC:34088 RNY5P7 RNA, Ro-associated Y5 pseudogene 7 pseudogene pseudogene Approved 10q24.31 10q24.31 2008-05-01 2012-10-03 100169835 NG_007998 +HGNC:34089 RNY5P8 RNA, Ro-associated Y5 pseudogene 8 pseudogene pseudogene Approved 13q33.1 13q33.1 2008-05-01 2015-01-29 100380878 NG_016734 +HGNC:34090 RNY5P9 RNA, Ro-associated Y5 pseudogene 9 pseudogene pseudogene Approved 16q21 16q21 2008-05-01 2012-10-26 100169836 NG_007999 +HGNC:34091 RNY5P10 RNA, Ro-associated Y5 pseudogene 10 pseudogene pseudogene Approved 19q13.12 19q13.12 2008-05-01 2010-06-25 100169837 NG_008006 +HGNC:10249 ROBO1 roundabout guidance receptor 1 protein-coding gene gene with protein product Approved 3p12.3 03p12.3 "DUTT1|FLJ21882|SAX3" "roundabout (axon guidance receptor, Drosophila) homolog 1|roundabout, axon guidance receptor, homolog 1 (Drosophila)" "Fibronectin type III domain containing|I-set domain containing" "555|593" 1998-03-26 2015-06-26 2016-04-25 6091 ENSG00000169855 OTTHUMG00000158843 uc003dqd.3 AF040990 NM_002941 "CCDS46872|CCDS54610|CCDS54611" Q9Y6N7 "9458045|9608531" MGI:1274781 RGD:61941 ROBO1 602430 +HGNC:10250 ROBO2 roundabout guidance receptor 2 protein-coding gene gene with protein product Approved 3p12.3 03p12.3 KIAA1568 "roundabout (axon guidance receptor, Drosophila) homolog 2|roundabout, axon guidance receptor, homolog 2 (Drosophila)" "Fibronectin type III domain containing|I-set domain containing" "555|593" 1998-03-26 2015-06-26 2015-09-07 6092 ENSG00000185008 OTTHUMG00000158935 uc003dpy.5 AF040991 XM_031246 "CCDS43109|CCDS54609" Q9HCK4 9458045 MGI:1890110 RGD:620167 ROBO2 602431 289371 +HGNC:44386 ROBO2P1 roundabout guidance receptor 2 pseudogene 1 pseudogene pseudogene Approved 7p12.1 07p12.1 ROBO2 pseudogene 1 2012-09-17 2015-06-26 2015-06-26 106480790 ENSG00000229478 OTTHUMG00000156001 NG_044091 PGOHUM00000232694 +HGNC:13433 ROBO3 roundabout guidance receptor 3 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "RBIG1|FLJ21044|HGPS" HGPPS "roundabout (axon guidance receptor, Drosophila) homolog 3|horizontal gaze palsy with progressive scoliosis|roundabout, axon guidance receptor, homolog 3 (Drosophila)" "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2004-05-10 2015-06-26 2016-10-05 64221 ENSG00000154134 OTTHUMG00000165934 uc001qbc.4 AK024697 XM_370663 CCDS44755 Q96MS0 15105459 MGI:1343102 RGD:1311018 ROBO3 608630 118352 +HGNC:17985 ROBO4 roundabout guidance receptor 4 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "FLJ20798|MRB|ECSM4" magic roundabout "roundabout homolog 4 (Drosophila)|roundabout, axon guidance receptor, homolog 4 (Drosophila)" "Fibronectin type III domain containing|I-set domain containing" "555|593" 2002-01-22 2015-06-26 2015-06-26 54538 ENSG00000154133 OTTHUMG00000165936 uc001qbg.4 AF361473 NM_019055 "CCDS8455|CCDS73409" Q8WZ75 11076864 MGI:1921394 RGD:6494870 ROBO4 607528 +HGNC:10251 ROCK1 Rho associated coiled-coil containing protein kinase 1 protein-coding gene gene with protein product Approved 18q11.1 18q11.1 p160ROCK Pleckstrin homology domain containing 682 1997-10-10 2016-01-18 2016-10-05 6093 ENSG00000067900 OTTHUMG00000131723 uc002kte.4 NM_005406 CCDS11870 Q13464 8617235 MGI:107927 RGD:620424 ROCK1 601702 objectId:1503 2.7.11.1 +HGNC:37832 ROCK1P1 Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudogene pseudogene Approved 18p11.32 18p11.32 2010-03-12 2016-01-18 2016-01-18 727758 ENSG00000263006 OTTHUMG00000177913 NR_033770 PGOHUM00000259265 +HGNC:10252 ROCK2 Rho associated coiled-coil containing protein kinase 2 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 Pleckstrin homology domain containing 682 1999-04-23 2016-01-18 2016-10-05 9475 ENSG00000134318 OTTHUMG00000149916 uc002rbd.2 D87931 NM_004850 CCDS42654 O75116 9933571 MGI:107926 RGD:3590 ROCK2 604002 objectId:1504 2.7.11.1 +HGNC:29478 ROGDI rogdi homolog protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ22386 rogdi homolog (Drosophila) 2006-03-08 2015-06-26 2016-10-12 79641 ENSG00000067836 OTTHUMG00000129479 uc002cxv.5 AK026039 NM_024589 CCDS10523 Q9GZN7 11230166 MGI:1913299 RGD:1560021 LRG_455|http://www.lrg-sequence.org/LRG/LRG_455 ROGDI 614574 299622 +HGNC:10254 ROM1 retinal outer segment membrane protein 1 protein-coding gene gene with protein product Approved 11q13 11q13 "TSPAN23|ROM" Tetraspanins 768 1990-01-15 2015-08-25 6094 ENSG00000149489 OTTHUMG00000167528 uc058cjh.1 L07894 NM_000327 CCDS8024 Q03395 8504299 MGI:97998 RGD:1306070 Mutations of the Rod Outer Membrane Proteine 1 (ROM1) Gene|http://www.retina-international.org/files/sci-news/rommut.htm ROM1 180721 118358 +HGNC:16185 ROMO1 reactive oxygen species modulator 1 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "bA353C18.2|MTGMP" mitochondrial targeting GXXXG protein C20orf52 chromosome 20 open reading frame 52 2001-07-17 2008-09-30 2008-09-30 2008-09-30 140823 ENSG00000125995 OTTHUMG00000032360 uc010gfm.4 AK000548 NM_080748 CCDS13264 P60602 "18313394|17537404|16842742" MGI:1914317 RGD:1587111 ROMO1 +HGNC:17692 ROPN1 rhophilin associated tail protein 1 protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "ODF6|ropporin|ROPN1A|CT91" cancer/testis antigen 91 ropporin, rhophilin associated protein 1 2003-01-21 2011-01-20 2011-01-20 54763 ENSG00000065371 OTTHUMG00000159556 uc062ned.1 AF231410 NM_017578 CCDS3026 Q9HAT0 10591629 MGI:1923628 RGD:1310675 ROPN1 611757 +HGNC:31927 ROPN1B rhophilin associated tail protein 1B protein-coding gene gene with protein product Approved 3q21.2 03q21.2 ropporin, rhophilin associated protein 1B 2005-03-02 2011-01-20 2015-09-07 152015 ENSG00000114547 OTTHUMG00000162651 uc010hsb.4 AF231410 NM_001012337 CCDS33841 Q9BZX4 ROPN1B +HGNC:24060 ROPN1L rhophilin associated tail protein 1 like protein-coding gene gene with protein product Approved 5p15.2 05p15.2 "ASP|FLJ25776|RSPH11" radial spoke head 11 homolog (Chlamydomonas) "ropporin 1-like|rhophilin associated tail protein 1-like" 2004-07-05 2016-01-28 2016-10-05 83853 ENSG00000145491 OTTHUMG00000090507 uc021xwo.2 AF239723 NM_031916 CCDS3879 Q96C74 11278869 MGI:2182357 RGD:1591367 ROPN1L 611756 +HGNC:39984 ROPN1L-AS1 ROPN1L antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5p15.2 05p15.2 ROPN1L antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100505845 ENSG00000250600 OTTHUMG00000162052 uc031siw.2 NR_102746 +HGNC:10256 ROR1 receptor tyrosine kinase like orphan receptor 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 NTRKR1 "Receptor Tyrosine Kinases|I-set domain containing" "321|593" 2000-02-29 2016-06-28 2016-06-28 4919 ENSG00000185483 OTTHUMG00000009022 uc001dbj.4 M97675 NM_005012 "CCDS626|CCDS41344" Q01973 "1334494|8875995" MGI:1347520 RGD:1559469 ROR1 602336 objectId:1845 +HGNC:40508 ROR1-AS1 ROR1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p31.3 01p31.3 2014-05-21 2014-11-19 101927034 ENSG00000223949 OTTHUMG00000009024 NR_110666 +HGNC:10257 ROR2 receptor tyrosine kinase like orphan receptor 2 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "NTRKR2|BDB|BDB1" receptor tyrosine kinase-like orphan receptor 2 "Receptor Tyrosine Kinases|I-set domain containing" "321|593" 2000-02-29 2016-03-29 2016-10-05 4920 ENSG00000169071 OTTHUMG00000020211 uc004arj.3 M97639 XM_017014762 CCDS6691 Q01974 "1334494|10700182" MGI:1347521 RGD:1305275 LOVD 2.0 - ROR2|http://grenada.lumc.nl/LOVD2/test/home.php?select_db=ROR2 ROR2 602337 118362 objectId:1846 +HGNC:10258 RORA RAR related orphan receptor A protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "RZRA|ROR1|ROR2|ROR3|NR1F1" RAR-related orphan receptor A Nuclear hormone receptors 71 1995-04-13 2016-01-25 2016-10-05 6095 ENSG00000069667 OTTHUMG00000132769 uc002agx.4 U04897 NM_134261 "CCDS10177|CCDS10178|CCDS10179|CCDS45271" P35398 7926749 MGI:104661 RGD:1308419 RORA 600825 objectId:598 +HGNC:51410 RORA-AS1 RORA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q22.2 15q22.2 2014-11-21 2014-11-21 101928784 ENSG00000245534 OTTHUMG00000172103 BC035094 NR_120339 +HGNC:51411 RORA-AS2 RORA antisense RNA 2 non-coding RNA RNA, long non-coding Approved 15q22.2 15q22.2 2014-11-21 2014-11-21 100996876 ENSG00000259482 OTTHUMG00000172106 "DB058680|DB033761" NR_120318 +HGNC:10259 RORB RAR related orphan receptor B protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "RZRB|NR1F2|ROR-BETA" RAR-related orphan receptor B Nuclear hormone receptors 71 1995-04-13 2016-01-25 2016-10-05 6096 ENSG00000198963 OTTHUMG00000020026 uc004ajh.4 Y08639 NM_006914 CCDS6646 Q92753 7926749 MGI:1343464 RGD:1306778 RORB 601972 objectId:599 +HGNC:49803 RORB-AS1 RORB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q21.13 09q21.13 2014-02-24 2014-02-24 103752585 ENSG00000224825 OTTHUMG00000020025 BI520565 NR_125791 +HGNC:10260 RORC RAR related orphan receptor C protein-coding gene gene with protein product Approved 1q21 01q21 "RZRG|RORG|NR1F3|TOR" RAR-related orphan receptor C Nuclear hormone receptors 71 1995-04-13 2016-01-25 2016-01-25 6097 ENSG00000143365 OTTHUMG00000013053 uc001ezh.4 U16997 XM_006711484 "CCDS1004|CCDS30856" P51449 7811290 MGI:104856 RGD:1595785 RORC 602943 objectId:600 +HGNC:10261 ROS1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "MCF3|ROS|c-ros-1" "v-ros avian UR2 sarcoma virus oncogene homolog 1|v-ros UR2 sarcoma virus oncogene homolog 1 (avian)|c-ros oncogene 1 , receptor tyrosine kinase" "Receptor Tyrosine Kinases|Fibronectin type III domain containing" "321|555" 1986-01-01 2016-04-06 2016-10-12 6098 ENSG00000047936 OTTHUMG00000016188 uc003pxp.2 M13599 XM_011536049 CCDS5116 P08922 1611909 MGI:97999 RGD:3591 LRG_997|http://www.lrg-sequence.org/LRG/LRG_997 ROS1 165020 objectId:1840 +HGNC:10263 RP1 retinitis pigmentosa 1 (autosomal dominant) protein-coding gene gene with protein product Approved 8q12.1 08q12.1 DCDC4A 1986-01-01 2014-11-19 6101 ENSG00000104237 OTTHUMG00000164379 uc003xsd.1 AF146592 NM_006269 CCDS6160 P56715 1783394 MGI:1341105 RGD:1596713 Mutations of the RP1 Gene|http://www.retina-international.org/files/sci-news/rp1mut.htm RP1 603937 118367 +HGNC:15946 RP1L1 retinitis pigmentosa 1 like 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 DCDC4B retinitis pigmentosa 1-like 1 2001-07-26 2016-10-10 2016-10-10 94137 ENSG00000183638 OTTHUMG00000163806 uc003wtc.4 AY168346 NM_178857 CCDS43708 Q8IWN7 12634863 MGI:2384303 RGD:1586886 RP1L1 608581 251688 +HGNC:10274 RP2 retinitis pigmentosa 2 (X-linked recessive) protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "TBCCD2|NME10|NM23-H10" 2001-06-22 2015-08-25 6102 ENSG00000102218 OTTHUMG00000021430 uc004dgw.5 AJ007590 NM_006915 CCDS14270 O75695 "6325945|9697692|19852809" MGI:1277953 RGD:1565124 "Mutations of the RP2 Gene|http://www.retina-international.org/files/sci-news/rp2mut.htm|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RP2" RP2 300757 118370 +HGNC:10285 RP5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10286 RP6 retinitis pigmentosa 6 (X-linked recessive) phenotype phenotype only Approved Xp21.3-p21.2 Xp21.3-p21.2 1990-09-10 2009-09-02 6104 312612 +HGNC:10288 RP9 retinitis pigmentosa 9 (autosomal dominant) protein-coding gene gene with protein product Approved 7p14.3 07p14.3 PAP-1 Pim-1 kinase associated protein 1994-04-27 2015-08-25 6100 ENSG00000164610 OTTHUMG00000152988 uc003tdm.4 AX016710 NM_203288 CCDS5440 Q8TA86 8513323 MGI:2157166 RGD:1559759 RP9 607331 118373 +HGNC:33969 RP9P retinitis pigmentosa 9 pseudogene pseudogene pseudogene Approved 7p14.3 07p14.3 2008-01-31 2014-11-19 441212 ENSG00000205763 OTTHUMG00000097855 NR_003500 +HGNC:10270 RP16 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13434 RP21 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-09-02 +HGNC:10276 RP22 retinitis pigmentosa 22 (autosomal recessive) phenotype phenotype only Approved 16p12.3-p12.1 16p12.3-p12.1 1997-11-05 2008-05-14 6114 9545639 602594 +HGNC:10278 RP24 retinitis pigmentosa 24 (X-linked recessive) phenotype phenotype only Approved Xq26-q27 Xq26-q27 1998-07-15 1999-06-02 6116 9792872 300155 +HGNC:10282 RP29 retinitis pigmentosa 29 (autosomal recessive) phenotype phenotype only Approved 4q32-q34 04q32-q34 2000-06-05 2011-02-10 54110 612165 +HGNC:21902 RP32 retinitis pigmentosa 32 (autosomal recessive) phenotype phenotype only Approved 1p21.2-p13.3 01p21.2-p13.3 2005-11-09 2011-02-10 641433 16189710 609913 +HGNC:33161 RP34 retinitis pigmentosa 34 (X-linked recessive) phenotype phenotype only Approved Xq28 Xq28 2006-10-31 2011-02-10 777642 16740911 300605 +HGNC:37092 RP35 retinitis pigmentosa 35 (autosomal dominant) phenotype phenotype only Approved reserved reserved 2009-06-02 2009-09-02 +HGNC:38112 RP52 retinitis pigmentosa 52 (autosomal dominant) phenotype phenotype only Approved 2q24.1-q31.1 02q24.1-q31.1 2010-05-07 2010-05-07 +HGNC:49652 RP63 retinitis pigmentosa 63 (autosomal dominant) phenotype phenotype only Approved 6q23 06q23 2014-01-28 2014-01-28 100862681 22083234 614494 +HGNC:10289 RPA1 replication protein A1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "REPA1|RPA70|HSSB|RF-A|RP-A" "replication protein A1 (70kD)|replication protein A1, 70kDa" Nucleotide excision repair 1269 1993-12-14 2015-11-09 2015-11-09 6117 ENSG00000132383 OTTHUMG00000090579 uc002fto.3 M63488 NM_002945 CCDS11014 P27694 8454588 MGI:1915525 RGD:1307376 RPA1 179835 +HGNC:10290 RPA2 replication protein A2 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "replication protein A2 (32kD)|replication protein A2, 32kDa" Nucleotide excision repair 1269 1993-12-14 2015-11-09 2016-10-05 6118 ENSG00000117748 OTTHUMG00000003915 uc001bpe.3 BC021257 NM_002946 "CCDS314|CCDS72740" P15927 8454588 MGI:1339939 RGD:619714 RPA2 179836 +HGNC:19676 RPA2P1 replication protein A2 pseudogene 1 pseudogene pseudogene Approved 14q21.3 14q21.3 RPA2P replication protein A2 pseudogene 2003-01-13 2013-02-15 2013-02-15 2014-11-19 326628 ENSG00000258392 OTTHUMG00000170872 NG_002610 PGOHUM00000248155 +HGNC:45117 RPA2P2 replication protein A2 pseudogene 2 pseudogene pseudogene Approved 10q23.1 10q23.1 2013-02-15 2013-02-15 389990 ENSG00000226466 OTTHUMG00000018623 NG_022150 PGOHUM00000238566 +HGNC:45118 RPA2P3 replication protein A2 pseudogene 3 pseudogene pseudogene Approved 11q22.1 11q22.1 2013-02-15 2013-02-15 100420359 ENSG00000255547 OTTHUMG00000167592 NG_024553 PGOHUM00000242874 +HGNC:10291 RPA3 replication protein A3 protein-coding gene gene with protein product Approved 7p21.3 07p21.3 REPA3 "replication protein A3 (14kD)|replication protein A3, 14kDa" Nucleotide excision repair 1269 1993-12-14 2015-11-09 2015-11-09 6119 ENSG00000106399 OTTHUMG00000023748 uc003sri.4 NM_002947 CCDS5356 P35244 8454588 MGI:1915490 RGD:1306810 RPA3 179837 +HGNC:30305 RPA4 replication protein A4 protein-coding gene gene with protein product Approved Xq21.33 Xq21.33 HSU24186 "replication protein A4, 34kDa|replication protein A4, 30kDa" Nucleotide excision repair 1269 2004-08-09 2015-11-09 2016-10-05 29935 ENSG00000204086 OTTHUMG00000021987 uc004efv.5 U24186 NM_013347 CCDS35345 Q13156 7760808 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPA4 RPA4 300767 +HGNC:28641 RPAIN RPA interacting protein protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "MGC4189|RIP|hRIP" 2006-05-08 2006-05-08 2014-11-19 84268 ENSG00000129197 OTTHUMG00000177872 uc002gbq.3 AY775314 NM_001033002 "CCDS32536|CCDS54075|CCDS54076|CCDS54077|CCDS54079" Q86UA6 "16135809|16008515" MGI:1916973 RGD:1308492 RPAIN +HGNC:24567 RPAP1 RNA polymerase II associated protein 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "DKFZP727M111|KIAA1403|MGC858|FLJ12732" 2004-03-16 2016-10-05 26015 ENSG00000103932 OTTHUMG00000130342 uc001zod.5 BC000246 NM_015540 CCDS10079 Q9BWH6 10718198 MGI:1916175 RGD:1590891 RPAP1 611475 +HGNC:25791 RPAP2 RNA polymerase II associated protein 2 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "FLJ13150|Rtr1" C1orf82 chromosome 1 open reading frame 82 2005-05-24 2007-07-26 2007-07-26 2015-08-14 79871 ENSG00000122484 OTTHUMG00000010288 uc001dot.3 AK023212 NM_024813 CCDS740 Q8IXW5 "17643375|22781759" MGI:2141142 RGD:1309034 RPAP2 611476 +HGNC:45125 RPAP2P1 RNA polymerase II associated protein 2 pseudogene 1 pseudogene pseudogene Approved 10q23.2 10q23.2 2013-02-15 2016-08-16 100272220 ENSG00000270874 OTTHUMG00000184745 NG_011757 PGOHUM00000289938 +HGNC:26151 RPAP3 RNA polymerase II associated protein 3 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "FLJ21908|spag" Tetratricopeptide repeat domain containing 769 2007-07-26 2014-11-19 79657 ENSG00000005175 OTTHUMG00000169668 uc001rpr.4 AK025561 NM_024604 "CCDS8753|CCDS53782|CCDS53783" Q9H6T3 17643375 MGI:1277218 RGD:1303036 RPAP3 611477 +HGNC:45238 RPARP-AS1 RPARP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q24.32 10q24.32 2014-02-19 2014-02-19 100505761 ENSG00000269609 OTTHUMG00000182529 NR_038937 +HGNC:10293 RPE ribulose-5-phosphate-3-epimerase protein-coding gene gene with protein product Approved 2q34 02q34 2001-06-22 2016-10-05 6120 ENSG00000197713 OTTHUMG00000154690 uc002vdn.5 NM_006916 "CCDS2388|CCDS42810|CCDS63107|CCDS63108|CCDS82567|CCDS82568" Q96AT9 MGI:1913896 RGD:1564890 RPE 180480 5.1.3.1 +HGNC:10294 RPE65 RPE65, retinoid isomerohydrolase protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "LCA2|rd12|BCO3" "BCO family, member 3|retinol isomerase|all-trans-retinyl-palmitate hydrolase" RP20 retinal pigment epithelium-specific protein 65kDa 1993-10-04 2016-07-04 2016-10-05 6121 ENSG00000116745 OTTHUMG00000009208 uc001dei.2 U18991 NM_000329 CCDS643 Q16518 "8340400|16116091" MGI:98001 RGD:621396 Mutations of the RPE65 Gene|http://www.retina-international.org/files/sci-news/rpe65mut.htm RPE65 180069 118376 3.1.1.64 +HGNC:45241 RPEL1 ribulose-5-phosphate-3-epimerase like 1 protein-coding gene gene with protein product Approved 10q24.33 10q24.33 2013-12-20 2016-06-30 2016-06-30 729020 ENSG00000235376 OTTHUMG00000018980 NM_001143909 CCDS65929 Q2QD12 16201836 +HGNC:44520 RPEP1 ribulose-5-phosphate-3-epimerase pseudogene 1 pseudogene pseudogene Approved 5q12.3 05q12.3 2012-11-14 2012-11-14 100420512 ENSG00000250732 OTTHUMG00000162552 NG_024597 PGOHUM00000235243 +HGNC:44521 RPEP2 ribulose-5-phosphate-3-epimerase pseudogene 2 pseudogene pseudogene Approved 3p24.2 03p24.2 2012-11-14 2012-11-14 645065 ENSG00000234158 OTTHUMG00000155599 NG_022243 PGOHUM00000237967 +HGNC:44522 RPEP3 ribulose-5-phosphate-3-epimerase pseudogene 3 pseudogene pseudogene Approved 1p35.3 01p35.3 2012-11-14 2012-11-14 100420555 ENSG00000230833 OTTHUMG00000003733 NG_027074 PGOHUM00000244652 +HGNC:44523 RPEP4 ribulose-5-phosphate-3-epimerase pseudogene 4 pseudogene pseudogene Approved 22q12.2 22q12.2 2012-11-14 2012-11-14 100420665 ENSG00000233010 OTTHUMG00000155625 NG_027475 PGOHUM00000246560 +HGNC:44524 RPEP5 ribulose-5-phosphate-3-epimerase pseudogene 5 pseudogene pseudogene Approved 2q24.2 02q24.2 2012-11-14 2012-11-14 106481798 ENSG00000234732 OTTHUMG00000153862 NG_043967 PGOHUM00000240410 +HGNC:44525 RPEP6 ribulose-5-phosphate-3-epimerase pseudogene 6 pseudogene pseudogene Approved 11q13.4 11q13.4 2012-11-14 2012-11-14 100420590 ENSG00000257075 OTTHUMG00000167872 NG_024529 PGOHUM00000242788 +HGNC:30350 RPF1 ribosome production factor 1 homolog protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "RNA processing factor 1|ribosome production factor 1" BXDC5 "brix domain containing 5|ribosome production factor 1 homolog (S. cerevisiae)" 2005-05-20 2009-09-25 2015-07-22 2015-07-22 80135 ENSG00000117133 OTTHUMG00000009857 uc001djv.5 AF322053 NM_025065 CCDS695 Q9H9Y2 11864606 MGI:1917535 RGD:1559755 RPF1 +HGNC:20870 RPF2 ribosome production factor 2 homolog protein-coding gene gene with protein product Approved 6q21 06q21 "FLJ21087|bA397G5.4" ribosomal processing factor 2 homolog (S. cerevisiae) BXDC1 "brix domain containing 1|ribosome production factor 2 homolog (S. cerevisiae)" 2003-04-16 2009-09-25 2015-07-22 2015-08-25 84154 ENSG00000197498 OTTHUMG00000015368 uc003pun.5 AK024740 NM_032194 CCDS5088 Q9H7B2 12048200 MGI:1914489 RGD:1306906 RPF2 +HGNC:16186 RPF2P1 ribosome production factor 2 homolog pseudogene 1 pseudogene pseudogene Approved 20q11.22 20q11.22 bA353C18.4 "C20orf53|BXDC1P|RPF2P" "chromosome 20 open reading frame 53|brix domain containing 1 pseudogene|ribosome production factor 2 pseudogene|ribosome production factor 2 homolog (S. cerevisiae) pseudogene 1" 2001-07-17 2012-05-28 2015-07-22 2015-07-22 729608 ENSG00000225357 OTTHUMG00000032362 AL357374 NG_009525 PGOHUM00000247649 +HGNC:44015 RPF2P2 ribosome production factor 2 homolog pseudogene 2 pseudogene pseudogene Approved 4q26 04q26 ribosome production factor 2 homolog (S. cerevisiae) pseudogene 2 2012-05-28 2015-07-22 2015-07-22 100128462 ENSG00000250693 OTTHUMG00000161072 NG_022073 PGOHUM00000246042 +HGNC:10295 RPGR retinitis pigmentosa GTPase regulator protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 CORDX1 "CRD|RP3|RP15|COD1" "retinitis pigmentosa 15|cone dystrophy 1 (X-linked)" 1999-04-29 2004-02-13 2015-08-25 6103 ENSG00000156313 OTTHUMG00000021361 uc004deb.4 U57629 NM_000328 "CCDS14246|CCDS35229" Q92834 "8673101|8817343" MGI:1344037 RGD:1560136 "Mutations of the Retinitis Pigmentosa GTPase Regulator (RPGR) Gene|http://www.retina-international.org/files/sci-news/rpgrmut.htm|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPGR|LOVD|http://lsdb.hgu.mrc.ac.uk/home.php?select_db=RPGR" RPGR 312610 118381 +HGNC:13436 RPGRIP1 retinitis pigmentosa GTPase regulator interacting protein 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "RGI1|LCA6|CORD13" RPGRIP C2 domain containing 823 2000-12-20 2016-05-06 57096 ENSG00000092200 OTTHUMG00000170758 uc001wag.4 AF227257 NM_020366 CCDS45080 Q96KN7 "10958647|10958648" MGI:1932134 RGD:1310807 Mutations of the Retinitis Pigmentosa GTPase Regulator Interacting Protein Gene|http://www.retina-international.org/sci-news/databases/mutation-database/rpgrip1-mutation/ RPGRIP1 605446 118388 +HGNC:29168 RPGRIP1L RPGRIP1 like protein-coding gene gene with protein product Approved 16q12.2 16q12.2 "KIAA1005|CORS3|JBTS7|MKS5|NPHP8|FTM|PPP1R134" "fantom homolog|Meckel syndrome, type 5|protein phosphatase 1, regulatory subunit 134" RPGRIP1-like "Protein phosphatase 1 regulatory subunits|C2 domain containing" "694|823" 2007-05-14 2016-05-10 2016-10-12 23322 ENSG00000103494 OTTHUMG00000173125 uc002eho.5 NM_015272 "CCDS32447|CCDS45486|CCDS76868|CCDS81980" Q68CZ1 10231032 MGI:1920563 RGD:1311099 LRG_696|http://www.lrg-sequence.org/LRG/LRG_696 RPGRIP1L 610937 140541 +HGNC:17056 RPH3A rabphilin 3A protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "KIAA0985|rabphilin|exophilin-1" rabphilin 3A homolog (mouse) Synaptotagmin like tandem C2 proteins 822 2003-12-10 2014-07-02 2015-09-07 22895 ENSG00000089169 OTTHUMG00000169713 uc058tlu.1 AB023202 NM_014954 "CCDS31904|CCDS44979" Q9Y2J0 "10231032|7822236" MGI:102788 RGD:620073 RPH3A 612159 +HGNC:10296 RPH3AL rabphilin 3A-like (without C2 domains) protein-coding gene gene with protein product Approved 17p13.3 17p13.3 Noc2 1999-04-14 2014-11-19 9501 ENSG00000181031 OTTHUMG00000090273 uc021tmx.1 NM_006987 "CCDS10994|CCDS54059" Q9UNE2 10395805 MGI:1923492 RGD:620342 RPH3AL 604881 +HGNC:10297 RPIA ribose 5-phosphate isomerase A protein-coding gene gene with protein product Approved 2p11.2 02p11.2 ribose 5-phosphate epimerase 1999-09-30 2008-07-31 2015-08-25 22934 ENSG00000153574 OTTHUMG00000130333 uc002ste.4 L35035 NM_144563 CCDS2004 P49247 7758956 MGI:103254 RGD:1311377 RPIA 180430 444921 5.3.1.6 +HGNC:27250 RPIAP1 ribose 5-phosphate isomerase A pseudogene 1 pseudogene pseudogene Approved 18q21.33 18q21.33 2005-10-06 2014-11-19 619449 ENSG00000267597 OTTHUMG00000180097 NG_023037 PGOHUM00000234947 +HGNC:10332 RPL3 ribosomal protein L3 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 L3 L ribosomal proteins 729 1990-07-03 2016-10-05 6122 ENSG00000100316 OTTHUMG00000151079 uc003axi.4 AB007166 NM_000967 CCDS13988 P39023 "2891103|9582194" MGI:1351605 RGD:735105 RPL3 604163 +HGNC:10351 RPL3L ribosomal protein L3 like protein-coding gene gene with protein product Approved 16p13.3 16p13.3 ribosomal protein L3-like L ribosomal proteins 729 1996-10-18 2015-11-17 2015-11-17 6123 ENSG00000140986 OTTHUMG00000128685 uc002cnh.4 U65581 NM_005061 CCDS10450 Q92901 8921388 MGI:1913461 RGD:1306315 RPL3L +HGNC:10352 RPL3P1 ribosomal protein L3 pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 RPL3P ribosomal protein L3 pseudogene 2009-03-01 2001-12-14 2001-12-07 2016-10-05 8488 ENSG00000228149 OTTHUMG00000086610 NG_000877 "9740676|19123937" PGOHUM00000239076 +HGNC:17834 RPL3P2 ribosomal protein L3 pseudogene 2 pseudogene pseudogene Approved 6p21.33 06p21.33 RPL3-Hom 2009-03-01 2014-11-18 116935 ENSG00000227939 OTTHUMG00000031035 D83770 NG_002397 "9177776|19123937" PGOHUM00000243581 +HGNC:23550 RPL3P3 ribosomal protein L3 pseudogene 3 pseudogene pseudogene Approved 14q22.3 14q22.3 2009-03-01 2014-11-18 645798 ENSG00000243388 OTTHUMG00000157922 AL137100 NG_009544 19123937 PGOHUM00000248181 +HGNC:19805 RPL3P4 ribosomal protein L3 pseudogene 4 pseudogene pseudogene Approved 14q32.2 14q32.2 2003-01-13 2011-03-17 326307 ENSG00000232573 OTTHUMG00000028964 NG_002559 PGOHUM00000247890 +HGNC:36934 RPL3P5 ribosomal protein L3 pseudogene 5 pseudogene pseudogene Approved 2q37.3 02q37.3 2009-03-06 2011-03-17 100130450 ENSG00000231546 OTTHUMG00000153071 NG_010767 19123937 PGOHUM00000240567 +HGNC:36395 RPL3P6 ribosomal protein L3 pseudogene 6 pseudogene pseudogene Approved 5q12.1 05q12.1 2009-03-06 2011-03-17 643220 ENSG00000213891 OTTHUMG00000157703 NG_010781 19123937 PGOHUM00000235237 +HGNC:36797 RPL3P7 ribosomal protein L3 pseudogene 7 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2012-11-05 642741 ENSG00000225093 OTTHUMG00000015318 NG_010941 19123937 PGOHUM00000243316 +HGNC:35498 RPL3P8 ribosomal protein L3 pseudogene 8 pseudogene pseudogene Approved 7q31.1 07q31.1 2009-03-06 2012-11-05 646620 ENSG00000232199 OTTHUMG00000155017 NG_009422 19123937 PGOHUM00000232961 +HGNC:36839 RPL3P9 ribosomal protein L3 pseudogene 9 pseudogene pseudogene Approved 8q21.13 08q21.13 2009-03-06 2012-11-05 100128963 ENSG00000240540 OTTHUMG00000158635 NG_011010 19123937 PGOHUM00000249399 +HGNC:36819 RPL3P10 ribosomal protein L3 pseudogene 10 pseudogene pseudogene Approved 8p11.22 08p11.22 2009-03-06 2016-10-05 100129004 ENSG00000243095 OTTHUMG00000158606 NG_011223 19123937 PGOHUM00000249302 +HGNC:35521 RPL3P11 ribosomal protein L3 pseudogene 11 pseudogene pseudogene Approved 9p23 09p23 2009-03-06 2012-11-05 100131893 ENSG00000223568 OTTHUMG00000019567 NG_010281 19123937 PGOHUM00000235967 +HGNC:36298 RPL3P12 ribosomal protein L3 pseudogene 12 pseudogene pseudogene Approved Xq25 Xq25 2009-03-06 2011-01-17 100131358 ENSG00000232496 OTTHUMG00000022325 NG_010160 19123937 PGOHUM00000241987 +HGNC:48494 RPL3P13 ribosomal protein L3 pseudogene 13 pseudogene pseudogene Approved 4q21.23 04q21.23 2013-05-15 2013-05-15 106480199 ENSG00000258013 OTTHUMG00000170561 NG_043489 PGOHUM00000259907 +HGNC:10353 RPL4 ribosomal protein L4 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 L4 60S ribosomal protein L4 L ribosomal proteins 729 1994-05-16 2016-10-05 6124 ENSG00000174444 OTTHUMG00000133193 uc002apv.4 AB007167 NM_000968 CCDS10218 P36578 "9582194|8268230" MGI:1915141 RGD:619824 RPL4 180479 +HGNC:23551 RPL4P1 ribosomal protein L4 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 2009-03-01 2014-11-19 650808 ENSG00000240954 OTTHUMG00000157660 AE000659 NG_001332 19123937 PGOHUM00000248054 +HGNC:36836 RPL4P2 ribosomal protein L4 pseudogene 2 pseudogene pseudogene Approved 1q24.1 01q24.1 2009-03-06 2012-11-05 646688 ENSG00000232341 OTTHUMG00000034324 NG_010174 19123937 PGOHUM00000245066 +HGNC:35773 RPL4P3 ribosomal protein L4 pseudogene 3 pseudogene pseudogene Approved 1q24.3 01q24.3 2009-03-06 2012-11-05 391135 ENSG00000230364 OTTHUMG00000034790 NG_011155 19123937 PGOHUM00000244334 +HGNC:36179 RPL4P4 ribosomal protein L4 pseudogene 4 pseudogene pseudogene Approved 3q27.2 03q27.2 2009-03-06 2012-11-05 647276 ENSG00000229638 OTTHUMG00000156700 NG_010560 19123937 PGOHUM00000237897 +HGNC:35699 RPL4P5 ribosomal protein L4 pseudogene 5 pseudogene pseudogene Approved 9p24.1 09p24.1 2009-03-06 2012-11-05 158345 ENSG00000230207 OTTHUMG00000019537 NG_010714 19123937 PGOHUM00000235960 +HGNC:35611 RPL4P6 ribosomal protein L4 pseudogene 6 pseudogene pseudogene Approved 22q13.1 22q13.1 2009-03-06 2016-10-05 100271033 ENSG00000230071 OTTHUMG00000151142 NG_010955 19123937 PGOHUM00000263073 +HGNC:10360 RPL5 ribosomal protein L5 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "L5|PPP1R135" protein phosphatase 1, regulatory subunit 135 "Protein phosphatase 1 regulatory subunits|L ribosomal proteins" "694|729" 1995-09-08 2015-08-25 6125 ENSG00000122406 OTTHUMG00000010899 uc001doz.4 U14966 NM_000969 CCDS741 P46777 "7937132|7772601" MGI:102854 RGD:619825 Diamond-Blackfan Anemia|http://www.dbagenes.unito.it/home.php?select_db=RPL5 RPL5 603634 171052 +HGNC:10361 RPL5P1 ribosomal protein L5 pseudogene 1 pseudogene pseudogene Approved 15q11.2 15q11.2 2009-03-01 2014-11-19 647436 ENSG00000241061 OTTHUMG00000157866 NG_009523 19123937 PGOHUM00000246676 +HGNC:16568 RPL5P2 ribosomal protein L5 pseudogene 2 pseudogene pseudogene Approved 20q13.12 20q13.12 dJ461P17.5 2009-03-01 2014-11-19 140749 ENSG00000237068 OTTHUMG00000032583 NG_000992 19123937 PGOHUM00000247544 +HGNC:31034 RPL5P3 ribosomal protein L5 pseudogene 3 pseudogene pseudogene Approved 15q23 15q23 HsT18216 2009-03-01 2014-11-18 400385 ENSG00000242276 OTTHUMG00000157991 AC013752 NG_009504 19123937 PGOHUM00000246835 +HGNC:36095 RPL5P4 ribosomal protein L5 pseudogene 4 pseudogene pseudogene Approved 1p34.3 01p34.3 2009-03-06 2013-05-20 643343 ENSG00000229994 OTTHUMG00000004240 NG_009571 19123937 PGOHUM00000244669 +HGNC:35564 RPL5P5 ribosomal protein L5 pseudogene 5 pseudogene pseudogene Approved 1q25.3 01q25.3 2009-03-06 2013-05-20 730213 ENSG00000213051 OTTHUMG00000035382 NG_009600 19123937 PGOHUM00000244368 +HGNC:35890 RPL5P6 ribosomal protein L5 pseudogene 6 pseudogene pseudogene Approved 1p22.2 01p22.2 2009-03-06 2013-05-20 646784 ENSG00000232393 OTTHUMG00000010077 NG_010665 19123937 PGOHUM00000244790 +HGNC:36583 RPL5P7 ribosomal protein L5 pseudogene 7 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2014-11-19 344178 ENSG00000234415 OTTHUMG00000154133 NG_010588 19123937 PGOHUM00000240433 +HGNC:36290 RPL5P8 ribosomal protein L5 pseudogene 8 pseudogene pseudogene Approved 2q34 02q34 2009-03-06 2013-05-20 100130523 ENSG00000213917 OTTHUMG00000154848 NG_011133 19123937 PGOHUM00000240515 +HGNC:36557 RPL5P9 ribosomal protein L5 pseudogene 9 pseudogene pseudogene Approved 2q13 02q13 2009-03-06 2013-05-20 100270832 ENSG00000236330 OTTHUMG00000153639 NG_011239 19123937 PGOHUM00000240859 +HGNC:36846 RPL5P10 ribosomal protein L5 pseudogene 10 pseudogene pseudogene Approved 3p22.1 03p22.1 2009-03-06 2013-05-20 645807 ENSG00000234067 OTTHUMG00000156008 NG_009583 19123937 PGOHUM00000237595 +HGNC:35483 RPL5P11 ribosomal protein L5 pseudogene 11 pseudogene pseudogene Approved 4q34.1 04q34.1 2009-03-06 2013-05-20 402193 ENSG00000242882 OTTHUMG00000157603 NG_010069 19123937 PGOHUM00000245772 +HGNC:36221 RPL5P12 ribosomal protein L5 pseudogene 12 pseudogene pseudogene Approved 4q23 04q23 2009-03-06 2013-05-20 100270833 ENSG00000242697 OTTHUMG00000157528 NG_011243 19123937 PGOHUM00000246006 +HGNC:37023 RPL5P13 ribosomal protein L5 pseudogene 13 pseudogene pseudogene Approved 4q31.21 04q31.21 2009-03-06 2014-11-18 100270834 ENSG00000242134 OTTHUMG00000157573 NG_011247 19123937 +HGNC:35924 RPL5P14 ribosomal protein L5 pseudogene 14 pseudogene pseudogene Approved 5p13.3 05p13.3 2009-03-06 2013-05-20 100270835 ENSG00000243914 OTTHUMG00000157661 NG_011256 19123937 PGOHUM00000235545 +HGNC:36769 RPL5P15 ribosomal protein L5 pseudogene 15 pseudogene pseudogene Approved 5q11.2 05q11.2 2009-03-06 2013-05-20 100270836 ENSG00000240412 OTTHUMG00000157698 NG_011262 19123937 PGOHUM00000235600 +HGNC:36009 RPL5P16 ribosomal protein L5 pseudogene 16 pseudogene pseudogene Approved 5q14.2 05q14.2 2009-03-06 2013-05-20 100270837 ENSG00000240411 OTTHUMG00000157791 NG_011269 19123937 PGOHUM00000235678 +HGNC:36605 RPL5P17 ribosomal protein L5 pseudogene 17 pseudogene pseudogene Approved 5q14.3 05q14.3 2009-03-06 2013-05-20 100270839 ENSG00000243859 OTTHUMG00000157794 NG_011278 19123937 PGOHUM00000235683 +HGNC:36640 RPL5P18 ribosomal protein L5 pseudogene 18 pseudogene pseudogene Approved 6q22.33 06q22.33 2009-03-06 2013-05-20 389428 ENSG00000220744 OTTHUMG00000015525 NG_010276 19123937 PGOHUM00000243769 +HGNC:36604 RPL5P19 ribosomal protein L5 pseudogene 19 pseudogene pseudogene Approved 6q15 06q15 2009-03-06 2013-05-20 100270906 ENSG00000220553 OTTHUMG00000015223 NG_010305 19123937 PGOHUM00000243713 +HGNC:36660 RPL5P20 ribosomal protein L5 pseudogene 20 pseudogene pseudogene Approved 6p22.3 06p22.3 2009-03-06 2013-05-20 100131913 ENSG00000218643 OTTHUMG00000014326 NG_010394 19123937 PGOHUM00000243499 +HGNC:37029 RPL5P21 ribosomal protein L5 pseudogene 21 pseudogene pseudogene Approved 6q22.33 06q22.33 2009-03-06 2013-05-20 100270838 ENSG00000218689 OTTHUMG00000015549 NG_011273 19123937 PGOHUM00000243361 +HGNC:35695 RPL5P22 ribosomal protein L5 pseudogene 22 pseudogene pseudogene Approved 8p21.1 08p21.1 2009-03-06 2013-05-20 389644 ENSG00000239198 OTTHUMG00000158585 NG_011351 19123937 PGOHUM00000249602 +HGNC:36553 RPL5P23 ribosomal protein L5 pseudogene 23 pseudogene pseudogene Approved 8p11.21 08p11.21 2009-03-06 2013-05-20 100270840 ENSG00000240395 OTTHUMG00000158609 NG_011285 19123937 PGOHUM00000249307 +HGNC:35828 RPL5P24 ribosomal protein L5 pseudogene 24 pseudogene pseudogene Approved 8q22.3 08q22.3 2009-03-06 2013-05-20 100270841 ENSG00000244052 OTTHUMG00000158676 NG_011288 19123937 PGOHUM00000249467 +HGNC:35493 RPL5P25 ribosomal protein L5 pseudogene 25 pseudogene pseudogene Approved 10p13 10p13 2009-03-06 2013-05-20 100271204 ENSG00000225251 OTTHUMG00000017691 NG_010517 19123937 PGOHUM00000238350 +HGNC:36247 RPL5P26 ribosomal protein L5 pseudogene 26 pseudogene pseudogene Approved 10q22.1 10q22.1 2009-03-06 2013-05-20 100271206 ENSG00000230469 OTTHUMG00000018392 NG_010525 19123937 PGOHUM00000238831 +HGNC:36172 RPL5P27 ribosomal protein L5 pseudogene 27 pseudogene pseudogene Approved 10q25.3 10q25.3 2009-03-06 2013-05-20 100129998 ENSG00000228195 OTTHUMG00000019108 NG_011070 19123937 PGOHUM00000238934 +HGNC:36827 RPL5P28 ribosomal protein L5 pseudogene 28 pseudogene pseudogene Approved 10q26.3 10q26.3 2009-03-06 2013-05-20 100131535 ENSG00000235264 OTTHUMG00000019305 NG_011076 19123937 PGOHUM00000238654 +HGNC:36335 RPL5P29 ribosomal protein L5 pseudogene 29 pseudogene pseudogene Approved 11q12.1 11q12.1 2009-03-06 2013-05-20 390158 ENSG00000242208 OTTHUMG00000158391 NG_010050 19123937 PGOHUM00000242725 +HGNC:35837 RPL5P30 ribosomal protein L5 pseudogene 30 pseudogene pseudogene Approved 11q23.3 11q23.3 2009-03-06 2013-05-20 645160 ENSG00000243431 OTTHUMG00000158472 NG_011357 19123937 PGOHUM00000242906 +HGNC:42036 RPL5P31 ribosomal protein L5 pseudogene 31 pseudogene pseudogene Approved 13q14.3 13q14.3 2011-06-01 2011-06-01 341674 ENSG00000214878 OTTHUMG00000016941 NG_009871 PGOHUM00000248400 +HGNC:36973 RPL5P32 ribosomal protein L5 pseudogene 32 pseudogene pseudogene Approved 15q13.1 15q13.1 2009-03-06 2012-03-07 100271207 ENSG00000228992 OTTHUMG00000128936 NG_010532 19123937 PGOHUM00000247017 +HGNC:36703 RPL5P33 ribosomal protein L5 pseudogene 33 pseudogene pseudogene Approved 17q21.33 17q21.33 2009-03-06 2013-05-20 100130929 ENSG00000243521 OTTHUMG00000157880 NG_010584 19123937 PGOHUM00000237433 +HGNC:36463 RPL5P34 ribosomal protein L5 pseudogene 34 pseudogene pseudogene Approved 22q13.2 22q13.2 2009-03-06 2013-05-20 388907 ENSG00000234009 OTTHUMG00000150746 NG_010237 19123937 PGOHUM00000246346 +HGNC:36967 RPL5P35 ribosomal protein L5 pseudogene 35 pseudogene pseudogene Approved 22q13.33 22q13.33 2009-03-06 2013-05-20 100129647 ENSG00000214727 OTTHUMG00000150295 NG_010574 19123937 PGOHUM00000246355 +HGNC:10362 RPL6 ribosomal protein L6 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "TAXREB107|L6" TXREB1 L ribosomal proteins 729 1993-06-15 2014-11-19 6128 ENSG00000089009 OTTHUMG00000169685 uc001ttv.4 X69391 XM_017019781 CCDS9162 Q02878 "8479925|8457378" MGI:108057 RGD:619826 RPL6 603703 +HGNC:35972 RPL6P1 ribosomal protein L6 pseudogene 1 pseudogene pseudogene Approved 1p34.1 01p34.1 2009-03-06 2009-03-11 440587 NG_010027 19123937 +HGNC:35964 RPL6P2 ribosomal protein L6 pseudogene 2 pseudogene pseudogene Approved 1p12 01p12 2009-03-06 2013-12-10 343495 ENSG00000227056 OTTHUMG00000012344 NG_011031 19123937 PGOHUM00000244164 +HGNC:35925 RPL6P3 ribosomal protein L6 pseudogene 3 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2009-03-11 391181 NG_010044 19123937 +HGNC:36344 RPL6P4 ribosomal protein L6 pseudogene 4 pseudogene pseudogene Approved 2p25.1 02p25.1 2009-03-06 2009-03-11 645054 NG_010981 19123937 +HGNC:36199 RPL6P5 ribosomal protein L6 pseudogene 5 pseudogene pseudogene Approved 2q22.3 02q22.3 2009-03-06 2013-09-24 100270844 ENSG00000214064 OTTHUMG00000153705 NG_011303 19123937 PGOHUM00000240972 +HGNC:36673 RPL6P6 ribosomal protein L6 pseudogene 6 pseudogene pseudogene Approved 2q34 02q34 2009-03-06 2009-03-11 100270845 NG_011311 19123937 +HGNC:35801 RPL6P7 ribosomal protein L6 pseudogene 7 pseudogene pseudogene Approved 3q25.31 03q25.31 2009-03-06 2011-07-27 100270848 ENSG00000239212 OTTHUMG00000157419 NG_009953 19123937 PGOHUM00000238238 +HGNC:37044 RPL6P8 ribosomal protein L6 pseudogene 8 pseudogene pseudogene Approved 3q25.33 03q25.33 2009-03-06 2011-07-07 100133100 ENSG00000242285 OTTHUMG00000157340 NG_011224 19123937 PGOHUM00000238249 +HGNC:36484 RPL6P9 ribosomal protein L6 pseudogene 9 pseudogene pseudogene Approved 3q23 03q23 2009-03-06 2013-07-31 100270847 ENSG00000242390 OTTHUMG00000157389 NG_011322 19123937 PGOHUM00000238219 +HGNC:36575 RPL6P10 ribosomal protein L6 pseudogene 10 pseudogene pseudogene Approved 4q13.1 04q13.1 2009-03-06 2009-03-11 642828 NG_010033 19123937 +HGNC:35681 RPL6P12 ribosomal protein L6 pseudogene 12 pseudogene pseudogene Approved 4q32.3-q33 04q32.3-q33 2009-03-06 2009-03-11 100270907 ENSG00000214671 OTTHUMG00000157602 NG_010311 19123937 +HGNC:36399 RPL6P13 ribosomal protein L6 pseudogene 13 pseudogene pseudogene Approved 4q21.3 04q21.3 2009-03-06 2009-03-11 643974 NG_010698 19123937 +HGNC:35661 RPL6P14 ribosomal protein L6 pseudogene 14 pseudogene pseudogene Approved 4q24 04q24 2009-03-06 2009-03-11 391679 NG_011328 19123937 +HGNC:36903 RPL6P15 ribosomal protein L6 pseudogene 15 pseudogene pseudogene Approved 5q31.1 05q31.1 2009-03-06 2009-03-11 100270843 NG_011297 19123937 +HGNC:35674 RPL6P16 ribosomal protein L6 pseudogene 16 pseudogene pseudogene Approved 4q35.1 04q35.1 2009-03-06 2009-03-11 728365 NG_011360 19123937 +HGNC:36914 RPL6P17 ribosomal protein L6 pseudogene 17 pseudogene pseudogene Approved 6p23 06p23 2009-03-06 2009-03-11 100131229 NG_010828 19123937 +HGNC:36911 RPL6P18 ribosomal protein L6 pseudogene 18 pseudogene pseudogene Approved 6p22.3 06p22.3 2009-03-06 2009-03-11 100131805 NG_011144 19123937 +HGNC:36754 RPL6P19 ribosomal protein L6 pseudogene 19 pseudogene pseudogene Approved 7q33 07q33 2009-03-06 2009-03-11 646483 NG_010443 19123937 +HGNC:36543 RPL6P20 ribosomal protein L6 pseudogene 20 pseudogene pseudogene Approved 7q11.21 07q11.21 2009-03-06 2009-03-11 285900 NG_006618 19123937 +HGNC:35994 RPL6P21 ribosomal protein L6 pseudogene 21 pseudogene pseudogene Approved 7p21.2 07p21.2 2009-03-06 2013-09-24 100270846 ENSG00000223445 OTTHUMG00000152410 NG_011317 19123937 PGOHUM00000232596 +HGNC:36220 RPL6P22 ribosomal protein L6 pseudogene 22 pseudogene pseudogene Approved 8p12 08p12 2009-03-06 2009-03-11 388460 NG_010561 19123937 +HGNC:36343 RPL6P24 ribosomal protein L6 pseudogene 24 pseudogene pseudogene Approved 10p13 10p13 2009-03-06 2016-08-16 100271034 ENSG00000227474 OTTHUMG00000017700 NG_010958 19123937 PGOHUM00000289748 +HGNC:36840 RPL6P25 ribosomal protein L6 pseudogene 25 pseudogene pseudogene Approved 12q21.31 12q21.31 2009-03-06 2009-03-11 401725 ENSG00000213270 OTTHUMG00000157640 NG_010323 19123937 +HGNC:36152 RPL6P26 ribosomal protein L6 pseudogene 26 pseudogene pseudogene Approved 17q21.31 17q21.31 2009-03-06 2009-03-11 100271035 NG_010962 19123937 +HGNC:36133 RPL6P27 ribosomal protein L6 pseudogene 27 pseudogene pseudogene Approved 18p11.31 18p11.31 2009-03-06 2009-03-11 645387 ENSG00000235552 OTTHUMG00000158161 NG_009652 19123937 +HGNC:36065 RPL6P28 ribosomal protein L6 pseudogene 28 pseudogene pseudogene Approved 22q13.31 22q13.31 2009-03-06 2009-03-11 100271208 NG_010536 19123937 +HGNC:36382 RPL6P29 ribosomal protein L6 pseudogene 29 pseudogene pseudogene Approved Xq21.33 Xq21.33 2009-03-06 2011-01-17 392505 ENSG00000236243 OTTHUMG00000021993 NG_010304 19123937 PGOHUM00000241902 +HGNC:36171 RPL6P30 ribosomal protein L6 pseudogene 30 pseudogene pseudogene Approved Xp22.2 Xp22.2 2009-03-06 2011-01-17 139452 ENSG00000215313 OTTHUMG00000021190 NG_010970 19123937 PGOHUM00000241198 +HGNC:10363 RPL7 ribosomal protein L7 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 "humL7-1|L7" L ribosomal proteins 729 1998-08-14 2016-10-05 6129 ENSG00000147604 OTTHUMG00000134312 uc064nrp.1 L16557 NM_000971 CCDS6212 P18124 "8360149|8441630" MGI:98073 RGD:735169 RPL7 604166 +HGNC:10364 RPL7A ribosomal protein L7a protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "SURF3|TRUP|L7A" "surfeit 3|PLA-X polypeptide|surfeit locus protein 3|60S ribosomal protein L7a|;|thyroid hormone receptor uncoupling protein" L ribosomal proteins 729 1989-11-29 2016-10-05 6130 ENSG00000148303 OTTHUMG00000020864 uc004cde.2 BC005128 NM_000972 CCDS6965 P62424 "2403926|2966065" MGI:1353472 RGD:1307586 RPL7A 185640 +HGNC:10365 RPL7AL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:10366 RPL7AP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:23552 RPL7AP2 ribosomal protein L7a pseudogene 2 pseudogene pseudogene Approved 14q21.1 14q21.1 2009-03-01 2014-11-19 652978 ENSG00000241984 OTTHUMG00000158046 AL109628 NG_009399 19123937 PGOHUM00000248144 +HGNC:23553 RPL7AP3 ribosomal protein L7a pseudogene 3 pseudogene pseudogene Approved 14q13.2 14q13.2 2005-12-22 2009-01-23 654370 ENSG00000256243 OTTHUMG00000171027 AL121594 NG_009375 +HGNC:23554 RPL7AP4 ribosomal protein L7a pseudogene 4 pseudogene pseudogene Approved 14q22.3 14q22.3 2009-03-01 2014-11-19 652985 ENSG00000213641 OTTHUMG00000157913 AL138499 NG_009400 19123937 PGOHUM00000248178 +HGNC:19781 RPL7AP5 ribosomal protein L7a pseudogene 5 pseudogene pseudogene Approved 14q24.1 14q24.1 2009-03-01 2014-11-18 326309 NG_002561 19123937 +HGNC:19785 RPL7AP6 ribosomal protein L7a pseudogene 6 pseudogene pseudogene Approved 14q24.2 14q24.2 2009-03-01 2014-11-19 326310 ENSG00000242071 OTTHUMG00000157981 NG_002562 19123937 +HGNC:21395 RPL7AP7 ribosomal protein L7a pseudogene 7 pseudogene pseudogene Approved 6p21.3 06p21.3 "RPL7B|dJ377H14.2" 2009-03-01 2014-11-18 353013 ENSG00000213880 OTTHUMG00000031297 NG_002738 "10557312|19123937" +HGNC:23738 RPL7AP8 ribosomal protein L7a pseudogene 8 pseudogene pseudogene Approved 10q23.2 10q23.2 bA141D8.1 2009-03-01 2016-08-17 340749 ENSG00000230507 OTTHUMG00000018653 NG_005665 19123937 PGOHUM00000289937 +HGNC:32398 RPL7AP9 ribosomal protein L7a pseudogene 9 pseudogene pseudogene Approved 12q15-q21 12q15-q21 RPL7AP59 ribosomal protein L7a pseudogene 59 2005-12-09 2014-11-19 441642 AJ224081 NG_010228 8482538 +HGNC:32433 RPL7AP10 ribosomal protein L7a pseudogene 10 pseudogene pseudogene Approved 19p12 19p12 RPL7AP68 ribosomal protein L7a pseudogene 68 2005-12-22 2016-07-25 161406 ENSG00000240522 OTTHUMG00000158087 AJ224082 NG_001317 8482538 PGOHUM00000294932 +HGNC:35242 RPL7AP11 ribosomal protein L7a pseudogene 11 pseudogene pseudogene Approved 3q13.33 03q13.33 2009-03-01 2014-11-18 728992 ENSG00000242445 OTTHUMG00000157358 NG_009397 19123937 PGOHUM00000238152 +HGNC:16562 RPL7AP12 ribosomal protein L7a pseudogene 12 pseudogene pseudogene Approved 20p13 20p13 dJ189G13.1 RPL7AL2 ribosomal protein L7a-like 2 2001-09-17 2009-01-23 2009-01-23 2009-09-22 128668 AL121916 NG_000969.3 +HGNC:16565 RPL7AP13 ribosomal protein L7a pseudogene 13 pseudogene pseudogene Approved 20p12.1 20p12.1 dJ348M17.1 RPL7AL3 ribosomal protein L7a-like 3 2001-09-17 2009-01-23 2009-01-23 2009-09-22 128748 AL135938 NG_000974 +HGNC:16590 RPL7AP14 ribosomal protein L7a pseudogene 14 pseudogene pseudogene Approved 20q11.23 20q11.23 dJ823N20.2 RPL7AL4 ribosomal protein L7a-like 4 2009-03-01 2009-01-23 2009-01-23 2016-07-25 140756 ENSG00000213979 OTTHUMG00000032418 AL133293 NG_000999 19123937 PGOHUM00000296990 +HGNC:36873 RPL7AP15 ribosomal protein L7a pseudogene 15 pseudogene pseudogene Approved 1q12 01q12 2009-03-06 2009-03-11 100270895 ENSG00000236806 OTTHUMG00000041477 NG_010250 19123937 +HGNC:35898 RPL7AP16 ribosomal protein L7a pseudogene 16 pseudogene pseudogene Approved 1p34.1 01p34.1 2009-03-06 2009-03-11 100270896 NG_010253 19123937 +HGNC:36501 RPL7AP17 ribosomal protein L7a pseudogene 17 pseudogene pseudogene Approved 1p21.2 01p21.2 2009-03-06 2009-03-11 100270897 NG_010257 19123937 +HGNC:35613 RPL7AP18 ribosomal protein L7a pseudogene 18 pseudogene pseudogene Approved 1p36.23 01p36.23 2009-03-06 2009-03-11 390993 NG_009561 19123937 +HGNC:36820 RPL7AP19 ribosomal protein L7a pseudogene 19 pseudogene pseudogene Approved 1q23 01q23 2009-03-06 2009-03-11 100271036 NG_010967 19123937 +HGNC:36358 RPL7AP20 ribosomal protein L7a pseudogene 20 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 100271037 NG_010971 19123937 +HGNC:37020 RPL7AP21 ribosomal protein L7a pseudogene 21 pseudogene pseudogene Approved 1q23 01q23 2009-03-06 2009-03-11 100271038 NG_010978 19123937 +HGNC:36592 RPL7AP22 ribosomal protein L7a pseudogene 22 pseudogene pseudogene Approved 2q24.1 02q24.1 2009-03-06 2009-03-11 100271039 NG_010986 19123937 +HGNC:36884 RPL7AP23 ribosomal protein L7a pseudogene 23 pseudogene pseudogene Approved 3p12.2 03p12.2 2009-03-06 2013-07-31 100271040 ENSG00000241367 OTTHUMG00000157328 NG_010992 19123937 PGOHUM00000237669 +HGNC:36588 RPL7AP24 ribosomal protein L7a pseudogene 24 pseudogene pseudogene Approved 3q24 03q24 2009-03-06 2009-03-11 100271041 NG_010997 19123937 +HGNC:36714 RPL7AP25 ribosomal protein L7a pseudogene 25 pseudogene pseudogene Approved 3q26.33 03q26.33 2009-03-06 2013-09-24 100271042 ENSG00000235294 OTTHUMG00000157270 NG_011001 19123937 PGOHUM00000237884 +HGNC:36815 RPL7AP26 ribosomal protein L7a pseudogene 26 pseudogene pseudogene Approved 4q21.22 04q21.22 2009-03-06 2014-11-19 728128 ENSG00000214988 OTTHUMG00000157511 NG_010339 19123937 PGOHUM00000245613 +HGNC:36806 RPL7AP27 ribosomal protein L7a pseudogene 27 pseudogene pseudogene Approved 4q35.2 04q35.2 2009-03-06 2009-03-11 152663 NG_010457 19123937 +HGNC:35656 RPL7AP28 ribosomal protein L7a pseudogene 28 pseudogene pseudogene Approved 4q28.3 04q28.3 2009-03-06 2013-09-24 100271209 ENSG00000184139 OTTHUMG00000157555 NG_010540 19123937 PGOHUM00000245697 +HGNC:36394 RPL7AP29 ribosomal protein L7a pseudogene 29 pseudogene pseudogene Approved 4p16.2 04p16.2 2009-03-06 2009-03-11 100271043 NG_011005 19123937 +HGNC:35757 RPL7AP30 ribosomal protein L7a pseudogene 30 pseudogene pseudogene Approved 4q25 04q25 2009-03-06 2015-08-24 441034 ENSG00000241741 OTTHUMG00000157546 NG_011047 19123937 PGOHUM00000299959 +HGNC:36857 RPL7AP31 ribosomal protein L7a pseudogene 31 pseudogene pseudogene Approved 4q12 04q12 2009-03-06 2009-03-11 728315 ENSG00000242083 OTTHUMG00000157477 NG_011300 19123937 +HGNC:36415 RPL7AP32 ribosomal protein L7a pseudogene 32 pseudogene pseudogene Approved 5q14.1 05q14.1 2009-03-06 2009-03-11 133748 NG_010602 19123937 +HGNC:36679 RPL7AP33 ribosomal protein L7a pseudogene 33 pseudogene pseudogene Approved 5q35.2 05q35.2 2009-03-06 2009-03-11 391850 ENSG00000254200 OTTHUMG00000157942 NG_011377 19123937 +HGNC:36778 RPL7AP34 ribosomal protein L7a pseudogene 34 pseudogene pseudogene Approved 6q12 06q12 2009-03-06 2009-03-11 441154 ENSG00000213312 OTTHUMG00000014948 NG_010352 19123937 +HGNC:36113 RPL7AP35 ribosomal protein L7a pseudogene 35 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2009-03-11 100271210 NG_010549 19123937 +HGNC:36356 RPL7AP36 ribosomal protein L7a pseudogene 36 pseudogene pseudogene Approved 6p24.3 06p24.3 2009-03-06 2009-03-11 728179 NG_010595 19123937 +HGNC:36507 RPL7AP37 ribosomal protein L7a pseudogene 37 pseudogene pseudogene Approved 6q23.3 06q23.3 2009-03-06 2009-03-11 645257 NG_010716 19123937 +HGNC:36161 RPL7AP38 ribosomal protein L7a pseudogene 38 pseudogene pseudogene Approved 7p15.2 07p15.2 2009-03-06 2009-03-11 442660 ENSG00000213787 OTTHUMG00000033538 NG_009419 19123937 +HGNC:35881 RPL7AP39 ribosomal protein L7a pseudogene 39 pseudogene pseudogene Approved 7q22.1 07q22.1 2009-03-06 2009-03-11 646476 NG_010410 19123937 +HGNC:35883 RPL7AP40 ribosomal protein L7a pseudogene 40 pseudogene pseudogene Approved 7q21.3 07q21.3 2009-03-06 2009-03-11 442712 NG_009431 19123937 +HGNC:36403 RPL7AP41 ribosomal protein L7a pseudogene 41 pseudogene pseudogene Approved 7p15.2 07p15.2 2009-03-06 2009-03-11 100271213 NG_010563 19123937 +HGNC:36716 RPL7AP42 ribosomal protein L7a pseudogene 42 pseudogene pseudogene Approved 7q31.1 07q31.1 2009-03-06 2009-03-11 100271215 NG_010571 19123937 +HGNC:35775 RPL7AP43 ribosomal protein L7a pseudogene 43 pseudogene pseudogene Approved 7q11.23 07q11.23 2009-03-06 2010-06-16 644236 NG_010732 19123937 +HGNC:36645 RPL7AP44 ribosomal protein L7a pseudogene 44 pseudogene pseudogene Approved 9q31.2 09q31.2 2009-03-06 2009-03-11 100271398 NG_011356 19123937 +HGNC:35935 RPL7AP45 ribosomal protein L7a pseudogene 45 pseudogene pseudogene Approved 9p11.2 09p11.2 2009-03-06 2009-03-11 100132678 NG_010378 19123937 +HGNC:35698 RPL7AP46 ribosomal protein L7a pseudogene 46 pseudogene pseudogene Approved 9q12 09q12 2009-03-06 2009-03-11 441440 NG_010499 19123937 +HGNC:36833 RPL7AP47 ribosomal protein L7a pseudogene 47 pseudogene pseudogene Approved 9p23 09p23 2009-03-06 2009-03-11 100271211 NG_010554 19123937 +HGNC:35953 RPL7AP48 ribosomal protein L7a pseudogene 48 pseudogene pseudogene Approved 9p22 09p22 2009-03-06 2009-03-11 100271212 NG_010558 19123937 +HGNC:35507 RPL7AP49 ribosomal protein L7a pseudogene 49 pseudogene pseudogene Approved 9p12 09p12 2009-03-06 2009-03-11 100271214 NG_011370 19123937 +HGNC:36117 RPL7AP50 ribosomal protein L7a pseudogene 50 pseudogene pseudogene Approved 10q21.3 10q21.3 2009-03-06 2016-08-16 87688 ENSG00000213609 OTTHUMG00000018321 NG_003062 19123937 PGOHUM00000289875 +HGNC:36826 RPL7AP51 ribosomal protein L7a pseudogene 51 pseudogene pseudogene Approved 10q21.3 10q21.3 2009-03-06 2016-08-17 100271533 ENSG00000226448 OTTHUMG00000018333 NG_010899 19123937 PGOHUM00000290185 +HGNC:36233 RPL7AP52 ribosomal protein L7a pseudogene 52 pseudogene pseudogene Approved 10q23.33 10q23.33 2009-03-06 2016-08-16 100271534 ENSG00000225354 OTTHUMG00000018798 NG_010903 19123937 PGOHUM00000290255 +HGNC:36392 RPL7AP53 ribosomal protein L7a pseudogene 53 pseudogene pseudogene Approved 10p11.22 10p11.22 2009-03-06 2016-08-17 401640 ENSG00000235962 OTTHUMG00000017935 NG_011194 19123937 PGOHUM00000289789 +HGNC:36264 RPL7AP54 ribosomal protein L7a pseudogene 54 pseudogene pseudogene Approved 11q14.1 11q14.1 2009-03-06 2009-03-11 390228 NG_010447 19123937 +HGNC:36314 RPL7AP55 ribosomal protein L7a pseudogene 55 pseudogene pseudogene Approved 11p15.4 11p15.4 2009-03-06 2009-03-11 100271535 NG_010910 19123937 +HGNC:35585 RPL7AP56 ribosomal protein L7a pseudogene 56 pseudogene pseudogene Approved 11p12 11p12 2009-03-06 2013-09-24 100271536 ENSG00000242834 OTTHUMG00000158348 NG_010915 19123937 PGOHUM00000242641 +HGNC:36551 RPL7AP57 ribosomal protein L7a pseudogene 57 pseudogene pseudogene Approved 11q14.3 11q14.3 2009-03-06 2013-09-24 100271537 ENSG00000242248 OTTHUMG00000158435 NG_010920 19123937 PGOHUM00000242856 +HGNC:36586 RPL7AP58 ribosomal protein L7a pseudogene 58 pseudogene pseudogene Approved 11p14.1 11p14.1 2009-03-06 2009-03-11 645846 ENSG00000240554 OTTHUMG00000158337 NG_011385 19123937 +HGNC:35859 RPL7AP60 ribosomal protein L7a pseudogene 60 pseudogene pseudogene Approved 12q24.13 12q24.13 2009-03-06 2009-03-11 100271538 ENSG00000213152 OTTHUMG00000157739 NG_010924 19123937 +HGNC:35482 RPL7AP61 ribosomal protein L7a pseudogene 61 pseudogene pseudogene Approved 13q32.2 13q32.2 2009-03-06 2010-12-02 100271539 ENSG00000233291 OTTHUMG00000017243 NG_010928 19123937 PGOHUM00000248669 +HGNC:36890 RPL7AP62 ribosomal protein L7a pseudogene 62 pseudogene pseudogene Approved 15q21.1 15q21.1 2009-03-06 2009-03-11 644029 NG_010977 19123937 +HGNC:35504 RPL7AP63 ribosomal protein L7a pseudogene 63 pseudogene pseudogene Approved 16q24.1 16q24.1 2009-03-06 2009-03-11 401865 NG_011041 19123937 +HGNC:35821 RPL7AP64 ribosomal protein L7a pseudogene 64 pseudogene pseudogene Approved 17p13.1 17p13.1 2009-03-06 2009-03-11 728486 ENSG00000213876 OTTHUMG00000157687 NG_011376 19123937 +HGNC:37031 RPL7AP65 ribosomal protein L7a pseudogene 65 pseudogene pseudogene Approved 17p11.2 17p11.2 2009-03-06 2009-03-11 100271543 ENSG00000228000 OTTHUMG00000059393 NG_010952 19123937 +HGNC:35682 RPL7AP66 ribosomal protein L7a pseudogene 66 pseudogene pseudogene Approved 18q12.2 18q12.2 2009-03-06 2012-08-13 388474 ENSG00000175886 NG_010633 19123937 +HGNC:35537 RPL7AP67 ribosomal protein L7a pseudogene 67 pseudogene pseudogene Approved 18q12 18q12 2009-03-06 2009-03-11 100271542 NG_010944 19123937 +HGNC:36697 RPL7AP69 ribosomal protein L7a pseudogene 69 pseudogene pseudogene Approved 19q13.43 19q13.43 2009-03-06 2013-09-24 100271545 ENSG00000268483 OTTHUMG00000158331 NG_010957 19123937 PGOHUM00000234808 +HGNC:36752 RPL7AP70 ribosomal protein L7a pseudogene 70 pseudogene pseudogene Approved 22q11.21 22q11.21 2009-03-06 2009-03-11 728139 NG_010403 19123937 +HGNC:35754 RPL7AP71 ribosomal protein L7a pseudogene 71 pseudogene pseudogene Approved Xp11.22 Xp11.22 2009-03-06 2011-09-20 100271399 ENSG00000234566 OTTHUMG00000021624 NG_010209 19123937 PGOHUM00000241789 +HGNC:36442 RPL7AP72 ribosomal protein L7a pseudogene 72 pseudogene pseudogene Approved Xq25 Xq25 2009-03-06 2011-01-17 100270754 ENSG00000235735 OTTHUMG00000022363 NG_009639 19123937 PGOHUM00000242003 +HGNC:41968 RPL7AP73 ribosomal protein L7a pseudogene 73 pseudogene pseudogene Approved 13q12.12 13q12.12 2011-05-24 2011-05-24 100873817 ENSG00000237952 OTTHUMG00000016552 NG_032383 PGOHUM00000248524 +HGNC:21370 RPL7L1 ribosomal protein L7 like 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 dJ475N16.4 ribosomal protein L7-like 1 L ribosomal proteins 729 2003-11-27 2015-11-17 2015-11-17 285855 ENSG00000146223 OTTHUMG00000014710 uc003osv.5 XM_209769 CCDS4873 Q6DKI1 MGI:1913479 RGD:1308469 RPL7L1 +HGNC:39455 RPL7L1P1 ribosomal protein L7 like 1 pseudogene 1 pseudogene pseudogene Approved 13q31.3 13q31.3 ribosomal protein L7-like 1 pseudogene 1 2011-01-14 2015-11-17 2015-11-17 100129260 ENSG00000234227 OTTHUMG00000017180 NG_009895 PGOHUM00000248460 +HGNC:39484 RPL7L1P2 ribosomal protein L7 like 1 pseudogene 2 pseudogene pseudogene Approved 7p12.1 07p12.1 ribosomal protein L7-like 1 pseudogene 2 2011-01-18 2015-11-17 2015-11-17 100420155 ENSG00000231490 OTTHUMG00000156002 NG_026460 PGOHUM00000232688 +HGNC:39485 RPL7L1P3 ribosomal protein L7 like 1 pseudogene 3 pseudogene pseudogene Approved 7q11.23 07q11.23 ribosomal protein L7-like 1 pseudogene 3 2011-01-18 2015-11-17 2015-11-17 100131964 ENSG00000235090 OTTHUMG00000156434 NG_008930 PGOHUM00000233435 +HGNC:39486 RPL7L1P4 ribosomal protein L7 like 1 pseudogene 4 pseudogene pseudogene Approved 5q23.1 05q23.1 ribosomal protein L7-like 1 pseudogene 4 2011-01-18 2015-11-17 2015-11-17 100130968 ENSG00000249582 OTTHUMG00000162891 NG_009915 PGOHUM00000235367 +HGNC:39487 RPL7L1P5 ribosomal protein L7 like 1 pseudogene 5 pseudogene pseudogene Approved 17q21.31 17q21.31 ribosomal protein L7-like 1 pseudogene 5 2011-01-18 2015-11-17 2015-11-17 390800 ENSG00000267634 OTTHUMG00000181817 NG_022451 PGOHUM00000264258 +HGNC:39488 RPL7L1P6 ribosomal protein L7 like 1 pseudogene 6 pseudogene pseudogene Approved 13q32.3 13q32.3 ribosomal protein L7-like 1 pseudogene 6 2011-01-18 2015-11-17 2015-11-17 100420201 NG_024947 PGOHUM00000248675 +HGNC:39489 RPL7L1P7 ribosomal protein L7 like 1 pseudogene 7 pseudogene pseudogene Approved 3q23 03q23 ribosomal protein L7-like 1 pseudogene 7 2011-01-18 2015-11-17 2015-11-17 646641 ENSG00000251137 OTTHUMG00000159953 NG_022221 PGOHUM00000237789 +HGNC:39490 RPL7L1P8 ribosomal protein L7 like 1 pseudogene 8 pseudogene pseudogene Approved 3q26.33 03q26.33 ribosomal protein L7-like 1 pseudogene 8 2011-01-18 2015-11-17 2015-11-17 402152 ENSG00000228766 OTTHUMG00000158298 NG_009922 PGOHUM00000238282 +HGNC:39491 RPL7L1P9 ribosomal protein L7 like 1 pseudogene 9 pseudogene pseudogene Approved 2q35 02q35 ribosomal protein L7-like 1 pseudogene 9 2011-01-18 2015-11-17 2015-11-17 100128899 ENSG00000231035 OTTHUMG00000155261 NG_009911 PGOHUM00000240522 +HGNC:39492 RPL7L1P10 ribosomal protein L7 like 1 pseudogene 10 pseudogene pseudogene Approved 2q36.3 02q36.3 ribosomal protein L7-like 1 pseudogene 10 2011-01-18 2015-11-17 2015-11-17 106480729 ENSG00000237322 OTTHUMG00000153591 NG_043639 +HGNC:39493 RPL7L1P11 ribosomal protein L7 like 1 pseudogene 11 pseudogene pseudogene Approved Xq28 Xq28 ribosomal protein L7-like 1 pseudogene 11 2011-01-18 2015-11-17 2015-11-17 347509 ENSG00000176970 OTTHUMG00000022610 NG_009927 PGOHUM00000242068 +HGNC:39811 RPL7L1P12 ribosomal protein L7 like 1 pseudogene 12 pseudogene pseudogene Approved 13q32.3 13q32.3 ribosomal protein L7-like 1 pseudogene 12 2011-03-29 2015-11-17 2015-11-17 100420200 ENSG00000231981 OTTHUMG00000017257 NG_024880 PGOHUM00000248476 +HGNC:44212 RPL7L1P13 ribosomal protein L7 like 1 pseudogene 13 pseudogene pseudogene Approved 4q25 04q25 ribosomal protein L7-like 1 pseudogene 13 2012-07-09 2015-11-17 2015-11-17 100133103 ENSG00000251464 OTTHUMG00000161110 NG_009923 PGOHUM00000299954 +HGNC:10367 RPL7P1 ribosomal protein L7 pseudogene 1 pseudogene pseudogene Approved 5q32 05q32 "RPL17P|RPL7P" ribosomal protein L7 pseudogene 2009-03-01 2013-10-09 2013-10-09 2014-11-18 6174 ENSG00000214485 OTTHUMG00000157906 X72686 NG_001193 "8001978|19123937" +HGNC:16336 RPL7P2 ribosomal protein L7 pseudogene 2 pseudogene pseudogene Approved 20p13 20p13 bA550O8.1 2001-09-17 2013-10-09 140695 ENSG00000227663 OTTHUMG00000031686 AL359916 NG_000981 PGOHUM00000247579 +HGNC:16566 RPL7P3 ribosomal protein L7 pseudogene 3 pseudogene pseudogene Approved 20q13.33 20q13.33 dJ353C17.2 2001-09-17 2013-10-09 140857 ENSG00000226094 OTTHUMG00000048001 AL449263 NG_001005 PGOHUM00000259648 +HGNC:21634 RPL7P4 ribosomal protein L7 pseudogene 4 pseudogene pseudogene Approved 6p21.33 06p21.33 Em:AB023049.2 2009-03-01 2014-11-18 100133037 ENSG00000230449 OTTHUMG00000031255 AB088099 NG_009564 19123937 PGOHUM00000243137 +HGNC:28886 RPL7P5 ribosomal protein L7 pseudogene 5 pseudogene pseudogene Approved 15q26.3 15q26.3 2009-03-01 2014-11-19 654381 ENSG00000241562 OTTHUMG00000158070 AC103967 NG_009530 19123937 PGOHUM00000246938 +HGNC:32430 RPL7P6 ribosomal protein L7 pseudogene 6 pseudogene pseudogene Approved 12p12.3 12p12.3 2009-03-01 2014-11-18 90193 ENSG00000227525 OTTHUMG00000157497 AC092828 NG_005389 19123937 PGOHUM00000258664 +HGNC:36895 RPL7P7 ribosomal protein L7 pseudogene 7 pseudogene pseudogene Approved 1p36.23 01p36.23 2009-03-06 2013-10-09 644896 ENSG00000224315 OTTHUMG00000001775 NG_005688 19123937 PGOHUM00000259449 +HGNC:35914 RPL7P8 ribosomal protein L7 pseudogene 8 pseudogene pseudogene Approved 1p13.3 01p13.3 2009-03-06 2013-10-09 441896 ENSG00000235045 OTTHUMG00000011636 NG_010218 19123937 PGOHUM00000244839 +HGNC:37028 RPL7P9 ribosomal protein L7 pseudogene 9 pseudogene pseudogene Approved 1p21.3 01p21.3 2009-03-06 2013-10-09 653702 ENSG00000137970 OTTHUMG00000010686 NG_007184 19123937 +HGNC:36599 RPL7P10 ribosomal protein L7 pseudogene 10 pseudogene pseudogene Approved 1p31.1 01p31.1 2009-03-06 2013-10-09 646538 ENSG00000229752 OTTHUMG00000009727 NG_010722 19123937 PGOHUM00000244082 +HGNC:35667 RPL7P11 ribosomal protein L7 pseudogene 11 pseudogene pseudogene Approved 1p36.23 01p36.23 2009-03-06 2013-10-09 100270823 ENSG00000234619 OTTHUMG00000001774 NG_011186 19123937 PGOHUM00000259551 +HGNC:36611 RPL7P12 ribosomal protein L7 pseudogene 12 pseudogene pseudogene Approved 2p22.2 02p22.2 2009-03-06 2013-10-09 100131085 ENSG00000227770 OTTHUMG00000152270 NG_010041 19123937 PGOHUM00000240623 +HGNC:36861 RPL7P13 ribosomal protein L7 pseudogene 13 pseudogene pseudogene Approved 2p16.3 02p16.3 2009-03-06 2013-10-09 130728 ENSG00000234253 OTTHUMG00000151779 NG_010878 19123937 PGOHUM00000240639 +HGNC:35984 RPL7P14 ribosomal protein L7 pseudogene 14 pseudogene pseudogene Approved 2q33.2 02q33.2 2009-03-06 2011-01-18 100129743 ENSG00000232994 OTTHUMG00000154574 NG_011075 19123937 PGOHUM00000241083 +HGNC:36740 RPL7P15 ribosomal protein L7 pseudogene 15 pseudogene pseudogene Approved 3q21.2 03q21.2 2009-03-06 2013-10-09 100270850 ENSG00000240622 OTTHUMG00000157359 NG_009964 19123937 PGOHUM00000237742 +HGNC:36591 RPL7P16 ribosomal protein L7 pseudogene 16 pseudogene pseudogene Approved 3q22.1 03q22.1 2009-03-06 2013-10-09 729677 ENSG00000242899 OTTHUMG00000157375 NG_010415 19123937 PGOHUM00000259834 +HGNC:36116 RPL7P17 ribosomal protein L7 pseudogene 17 pseudogene pseudogene Approved 4q21.1 04q21.1 2009-03-06 2013-10-09 100270851 ENSG00000214062 OTTHUMG00000157502 NG_009971 19123937 PGOHUM00000245598 +HGNC:36949 RPL7P18 ribosomal protein L7 pseudogene 18 pseudogene pseudogene Approved 5q15 05q15 2009-03-06 2013-10-09 100270852 ENSG00000243806 OTTHUMG00000157803 NG_009976 19123937 PGOHUM00000235316 +HGNC:36268 RPL7P19 ribosomal protein L7 pseudogene 19 pseudogene pseudogene Approved 5q31.2 05q31.2 2009-03-06 2013-10-09 100270853 ENSG00000241458 OTTHUMG00000157864 NG_009983 19123937 PGOHUM00000235770 +HGNC:36013 RPL7P20 ribosomal protein L7 pseudogene 20 pseudogene pseudogene Approved 5q34 05q34 2009-03-06 2013-10-09 728843 ENSG00000254252 OTTHUMG00000157934 NG_010025 19123937 PGOHUM00000235449 +HGNC:36762 RPL7P21 ribosomal protein L7 pseudogene 21 pseudogene pseudogene Approved 5q31.3 05q31.3 2009-03-06 2013-10-09 729123 ENSG00000231579 OTTHUMG00000157888 NG_010188 19123937 PGOHUM00000235800 +HGNC:35802 RPL7P22 ribosomal protein L7 pseudogene 22 pseudogene pseudogene Approved 5q13.2 05q13.2 2009-03-06 2011-01-18 728620 ENSG00000226544 OTTHUMG00000157744 NG_009670 19123937 PGOHUM00000235649 +HGNC:35658 RPL7P23 ribosomal protein L7 pseudogene 23 pseudogene pseudogene Approved 5q13.3 05q13.3 2009-03-06 2013-10-09 648000 ENSG00000244363 OTTHUMG00000157760 NG_010343 19123937 +HGNC:36715 RPL7P24 ribosomal protein L7 pseudogene 24 pseudogene pseudogene Approved 5q14.1 05q14.1 2009-03-06 2013-10-09 100127893 ENSG00000240003 OTTHUMG00000157787 NG_010787 19123937 PGOHUM00000260084 +HGNC:36455 RPL7P25 ribosomal protein L7 pseudogene 25 pseudogene pseudogene Approved 6p21.31 06p21.31 2009-03-06 2013-10-09 100129061 ENSG00000216636 OTTHUMG00000014550 NG_009529 19123937 PGOHUM00000243599 +HGNC:36630 RPL7P26 ribosomal protein L7 pseudogene 26 pseudogene pseudogene Approved 6p22.3 06p22.3 2009-03-06 2013-10-09 728380 ENSG00000184612 OTTHUMG00000014308 NG_009536 19123937 PGOHUM00000260108 +HGNC:36649 RPL7P27 ribosomal protein L7 pseudogene 27 pseudogene pseudogene Approved 6q14.3 06q14.3 2009-03-06 2013-10-09 643906 ENSG00000220069 OTTHUMG00000015148 NG_010353 19123937 PGOHUM00000260137 +HGNC:35899 RPL7P28 ribosomal protein L7 pseudogene 28 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2013-10-09 442242 ENSG00000218632 OTTHUMG00000015343 NG_011375 19123937 PGOHUM00000243324 +HGNC:35700 RPL7P29 ribosomal protein L7 pseudogene 29 pseudogene pseudogene Approved 6q14.3 06q14.3 2009-03-06 2013-06-19 643971 ENSG00000214457 OTTHUMG00000015157 NG_010680 19123937 PGOHUM00000243698 +HGNC:36151 RPL7P30 ribosomal protein L7 pseudogene 30 pseudogene pseudogene Approved 7q21.11 07q21.11 2009-03-06 2013-09-24 100270908 ENSG00000227982 OTTHUMG00000154720 NG_010316 19123937 PGOHUM00000260274 +HGNC:36988 RPL7P31 ribosomal protein L7 pseudogene 31 pseudogene pseudogene Approved 7p14.3 07p14.3 2009-03-06 2012-03-23 100270909 ENSG00000235379 OTTHUMG00000153021 NG_010320 19123937 PGOHUM00000233176 +HGNC:35692 RPL7P32 ribosomal protein L7 pseudogene 32 pseudogene pseudogene Approved 7q31.1 07q31.1 2009-03-06 2013-10-09 100130892 ENSG00000231006 OTTHUMG00000157146 NG_010411 19123937 +HGNC:35937 RPL7P33 ribosomal protein L7 pseudogene 33 pseudogene pseudogene Approved 9p22.3 09p22.3 2009-03-06 2013-10-09 286348 ENSG00000215236 OTTHUMG00000019582 NG_010731 19123937 PGOHUM00000260496 +HGNC:36181 RPL7P34 ribosomal protein L7 pseudogene 34 pseudogene pseudogene Approved 10q23.31 10q23.31 2009-03-06 2013-10-09 389992 ENSG00000237205 OTTHUMG00000018690 NG_010538 19123937 PGOHUM00000238576 +HGNC:36153 RPL7P35 ribosomal protein L7 pseudogene 35 pseudogene pseudogene Approved 10q25.2 10q25.2 2009-03-06 2013-10-09 100271216 ENSG00000233518 OTTHUMG00000019041 NG_010577 19123937 PGOHUM00000238623 +HGNC:37045 RPL7P36 ribosomal protein L7 pseudogene 36 pseudogene pseudogene Approved 10q24.2 10q24.2 2009-03-06 2012-05-10 100271218 ENSG00000234109 OTTHUMG00000018879 NG_010586 19123937 PGOHUM00000238904 +HGNC:36656 RPL7P37 ribosomal protein L7 pseudogene 37 pseudogene pseudogene Approved 10p11.21 10p11.21 2009-03-06 2013-10-09 439954 ENSG00000226646 OTTHUMG00000017958 NG_010766 19123937 PGOHUM00000238723 +HGNC:36731 RPL7P38 ribosomal protein L7 pseudogene 38 pseudogene pseudogene Approved 12q21.31 12q21.31 2009-03-06 2013-10-09 120872 ENSG00000239473 OTTHUMG00000157627 NG_010219 19123937 PGOHUM00000258683 +HGNC:36214 RPL7P39 ribosomal protein L7 pseudogene 39 pseudogene pseudogene Approved 12q14.3 12q14.3 2009-03-06 2013-10-09 100271217 ENSG00000243020 OTTHUMG00000157607 NG_010581 19123937 PGOHUM00000239497 +HGNC:36031 RPL7P40 ribosomal protein L7 pseudogene 40 pseudogene pseudogene Approved 12p12.3 12p12.3 2009-03-06 2013-09-24 100271220 ENSG00000242991 OTTHUMG00000157496 NG_010600 19123937 PGOHUM00000239692 +HGNC:36297 RPL7P41 ribosomal protein L7 pseudogene 41 pseudogene pseudogene Approved 12q13.13 12q13.13 2009-03-06 2013-10-09 100271222 ENSG00000241146 OTTHUMG00000157570 NG_010611 19123937 PGOHUM00000239790 +HGNC:35543 RPL7P42 ribosomal protein L7 pseudogene 42 pseudogene pseudogene Approved 12q15 12q15 2009-03-06 2013-10-09 100271223 ENSG00000241825 OTTHUMG00000157614 NG_010616 19123937 PGOHUM00000239842 +HGNC:36441 RPL7P43 ribosomal protein L7 pseudogene 43 pseudogene pseudogene Approved 12q21.2 12q21.2 2009-03-06 2013-10-09 100271224 ENSG00000241045 OTTHUMG00000157625 NG_010619 19123937 PGOHUM00000239867 +HGNC:36143 RPL7P44 ribosomal protein L7 pseudogene 44 pseudogene pseudogene Approved 13q22.3 13q22.3 2009-03-06 2014-11-19 390413 ENSG00000233873 OTTHUMG00000017102 NG_010043 19123937 PGOHUM00000248443 +HGNC:35522 RPL7P45 ribosomal protein L7 pseudogene 45 pseudogene pseudogene Approved 13q33.2 13q33.2 2009-03-06 2013-07-31 100271225 ENSG00000225823 OTTHUMG00000017316 NG_010625 19123937 PGOHUM00000258730 +HGNC:36706 RPL7P46 ribosomal protein L7 pseudogene 46 pseudogene pseudogene Approved 16p13.13 16p13.13 2009-03-06 2013-10-09 642451 ENSG00000229917 OTTHUMG00000152920 NG_010773 19123937 PGOHUM00000248982 +HGNC:35913 RPL7P47 ribosomal protein L7 pseudogene 47 pseudogene pseudogene Approved 16p12.3 16p12.3 2009-03-06 2013-10-09 146110 ENSG00000228071 OTTHUMG00000158115 NG_004804 19123937 PGOHUM00000250676 +HGNC:35540 RPL7P48 ribosomal protein L7 pseudogene 48 pseudogene pseudogene Approved 17q21.33 17q21.33 2009-03-06 2013-10-09 388401 ENSG00000187504 OTTHUMG00000157881 NG_010260 19123937 PGOHUM00000259189 +HGNC:36912 RPL7P49 ribosomal protein L7 pseudogene 49 pseudogene pseudogene Approved 17q25.1 17q25.1 2009-03-06 2013-10-09 100271221 ENSG00000242931 OTTHUMG00000157946 NG_010606 19123937 PGOHUM00000259198 +HGNC:35816 RPL7P50 ribosomal protein L7 pseudogene 50 pseudogene pseudogene Approved 19p13.3 19p13.3 2009-03-06 2013-10-09 729449 ENSG00000268785 OTTHUMG00000157978 NG_010543 19123937 PGOHUM00000259373 +HGNC:36432 RPL7P51 ribosomal protein L7 pseudogene 51 pseudogene pseudogene Approved 19q13.41 19q13.41 2009-03-06 2013-10-09 100271226 ENSG00000243469 OTTHUMG00000158219 NG_010631 19123937 PGOHUM00000259417 +HGNC:35676 RPL7P52 ribosomal protein L7 pseudogene 52 pseudogene pseudogene Approved 22q13.1 22q13.1 2009-03-06 2013-10-09 646912 ENSG00000228599 OTTHUMG00000151113 NG_009750 19123937 PGOHUM00000246334 +HGNC:36831 RPL7P53 ribosomal protein L7 pseudogene 53 pseudogene pseudogene Approved Xq13.2 Xq13.2 2009-03-06 2011-09-20 100271145 ENSG00000237475 OTTHUMG00000021834 NG_010222 19123937 PGOHUM00000241846 +HGNC:36817 RPL7P54 ribosomal protein L7 pseudogene 54 pseudogene pseudogene Approved Xq21.1 Xq21.1 2009-03-06 2011-09-20 100271146 ENSG00000227645 OTTHUMG00000021894 NG_010226 19123937 PGOHUM00000241866 +HGNC:36105 RPL7P55 ribosomal protein L7 pseudogene 55 pseudogene pseudogene Approved Xq21.32 Xq21.32 2009-03-06 2011-01-17 100271147 ENSG00000228301 OTTHUMG00000021973 NG_010232 19123937 PGOHUM00000241891 +HGNC:35588 RPL7P56 ribosomal protein L7 pseudogene 56 pseudogene pseudogene Approved Xq26.3 Xq26.3 2009-03-06 2011-09-20 728962 ENSG00000231164 OTTHUMG00000022513 NG_010676 19123937 PGOHUM00000260989 +HGNC:35901 RPL7P57 ribosomal protein L7 pseudogene 57 pseudogene pseudogene Approved Xp11.23 Xp11.23 2009-03-06 2011-01-18 643507 ENSG00000224401 OTTHUMG00000021457 NG_010930 19123937 PGOHUM00000241276 +HGNC:49214 RPL7P58 ribosomal protein L7 pseudogene 58 pseudogene pseudogene Approved Xp21.3 Xp21.3 2013-10-09 2013-10-09 646346 ENSG00000216938 OTTHUMG00000021293 NG_009918 PGOHUM00000241679 +HGNC:49215 RPL7P59 ribosomal protein L7 pseudogene 59 pseudogene pseudogene Approved 7q35 07q35 2013-10-09 2013-10-09 643308 ENSG00000225918 OTTHUMG00000152721 NG_011222 PGOHUM00000233065 +HGNC:49216 RPL7P60 ribosomal protein L7 pseudogene 60 pseudogene pseudogene Approved 7q22.1 07q22.1 2013-10-09 2013-10-09 100289264 ENSG00000214142 OTTHUMG00000154844 NG_030267 PGOHUM00000250894 +HGNC:49217 RPL7P61 ribosomal protein L7 pseudogene 61 pseudogene pseudogene Approved 2q24.3 02q24.3 2013-10-09 2013-10-09 101929589 ENSG00000230282 OTTHUMG00000153910 PGOHUM00000240412 +HGNC:10368 RPL8 ribosomal protein L8 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 L8 L ribosomal proteins 729 1994-05-16 2011-04-06 6132 ENSG00000161016 OTTHUMG00000165249 uc003zec.4 Z28407 NM_000973 CCDS6433 P62917 "7506540|9582194" MGI:1350927 RGD:619827 RPL8 604177 +HGNC:13980 RPL8P1 ribosomal protein L8 pseudogene 1 pseudogene pseudogene Approved 6p21 06p21 "RPL2p|dJ15D7.1" RPL8P 2003-11-27 2009-01-22 387046 NG_009559 +HGNC:17220 RPL8P2 ribosomal protein L8 pseudogene 2 pseudogene pseudogene Approved 21q22.11 21q22.11 2003-10-02 2013-09-24 100128766 ENSG00000225267 OTTHUMG00000081870 NG_009886 PGOHUM00000239062 +HGNC:36407 RPL8P3 ribosomal protein L8 pseudogene 3 pseudogene pseudogene Approved 3q23 03q23 2009-03-06 2009-03-11 100270854 NG_009991 19123937 +HGNC:35555 RPL8P4 ribosomal protein L8 pseudogene 4 pseudogene pseudogene Approved 3q26.31 03q26.31 2009-03-06 2009-03-11 402150 NG_011184 19123937 +HGNC:35758 RPL8P5 ribosomal protein L8 pseudogene 5 pseudogene pseudogene Approved 22q11.21 22q11.21 2009-03-06 2009-03-11 100271044 NG_011013 19123937 +HGNC:10369 RPL9 ribosomal protein L9 protein-coding gene gene with protein product Approved 4p14 04p14 L9 L ribosomal proteins 729 1993-12-07 2016-10-05 6133 ENSG00000163682 OTTHUMG00000099367 uc003guc.4 D14531 NM_000661 CCDS3452 P32969 "8597601|8415001" MGI:1298373 RGD:62049 RPL9 603686 +HGNC:17049 RPL9P2 ribosomal protein L9 pseudogene 2 pseudogene pseudogene Approved 17p12 17p12 2009-03-01 2014-11-19 729004 ENSG00000234324 OTTHUMG00000059068 NG_009558 "9027492|19123937" +HGNC:23555 RPL9P3 ribosomal protein L9 pseudogene 3 pseudogene pseudogene Approved 14q13.2 14q13.2 2009-03-01 2014-11-19 641616 ENSG00000240392 OTTHUMG00000157758 AL121594 NG_009539 19123937 +HGNC:23556 RPL9P4 ribosomal protein L9 pseudogene 4 pseudogene pseudogene Approved 14q12 14q12 2009-03-01 2014-11-19 644223 AL163973 NG_009540 19123937 +HGNC:23557 RPL9P5 ribosomal protein L9 pseudogene 5 pseudogene pseudogene Approved 14q23.1 14q23.1 2009-03-01 2014-11-19 100129179 ENSG00000239510 OTTHUMG00000157933 AL135752 NG_008795 19123937 +HGNC:19798 RPL9P6 ribosomal protein L9 pseudogene 6 pseudogene pseudogene Approved 14q31.1 14q31.1 2009-03-01 2014-11-18 326311 NG_002563 19123937 +HGNC:30335 RPL9P7 ribosomal protein L9 pseudogene 7 pseudogene pseudogene Approved Xp22.11 Xp22.11 "RPL9P1|RPL9L1" "ribosomal protein L9 pseudogene 1|ribosomal protein L9-like 1" 2009-03-01 2010-11-12 2016-10-05 6126 ENSG00000238103 OTTHUMG00000021254 U09955 NG_002471 "8597601|19123937" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPL9P7 RPL9P7 +HGNC:30334 RPL9P8 ribosomal protein L9 pseudogene 8 pseudogene pseudogene Approved 15q25.2 15q25.2 2009-03-01 2014-11-19 254948 NG_002468 "8597601|19123937" +HGNC:17251 RPL9P9 ribosomal protein L9 pseudogene 9 pseudogene pseudogene Approved 15q25.2 15q25.2 2009-03-01 2015-08-25 388147 ENSG00000237550 OTTHUMG00000158044 NG_003190 19123937 +HGNC:35686 RPL9P10 ribosomal protein L9 pseudogene 10 pseudogene pseudogene Approved 1q42.2 01q42.2 2009-03-06 2009-03-11 100270855 NG_009998 19123937 +HGNC:35621 RPL9P11 ribosomal protein L9 pseudogene 11 pseudogene pseudogene Approved 1p36.22 01p36.22 2009-03-06 2009-03-11 642740 NG_006150 19123937 +HGNC:36728 RPL9P12 ribosomal protein L9 pseudogene 12 pseudogene pseudogene Approved 1p32.3 01p32.3 2009-03-06 2009-03-11 100270825 NG_011199 19123937 +HGNC:36558 RPL9P13 ribosomal protein L9 pseudogene 13 pseudogene pseudogene Approved 2q22.1 02q22.1 2009-03-06 2009-03-11 100270856 NG_010007 19123937 +HGNC:36816 RPL9P14 ribosomal protein L9 pseudogene 14 pseudogene pseudogene Approved 2q33.3 02q33.3 2009-03-06 2009-03-11 100132061 NG_011145 19123937 +HGNC:35539 RPL9P15 ribosomal protein L9 pseudogene 15 pseudogene pseudogene Approved 3q25.2 03q25.2 2009-03-06 2013-09-24 100270857 ENSG00000240601 OTTHUMG00000157417 NG_010012 19123937 PGOHUM00000237827 +HGNC:36851 RPL9P16 ribosomal protein L9 pseudogene 16 pseudogene pseudogene Approved 4q32.3 04q32.3 2009-03-06 2009-03-11 727835 ENSG00000214676 OTTHUMG00000157599 NG_010139 19123937 +HGNC:36337 RPL9P17 ribosomal protein L9 pseudogene 17 pseudogene pseudogene Approved 5p13.3 05p13.3 2009-03-06 2009-03-11 728523 NG_011050 19123937 +HGNC:36954 RPL9P18 ribosomal protein L9 pseudogene 18 pseudogene pseudogene Approved 6q12 06q12 2009-03-06 2009-03-11 389404 ENSG00000213309 OTTHUMG00000014950 NG_010148 19123937 +HGNC:36688 RPL9P19 ribosomal protein L9 pseudogene 19 pseudogene pseudogene Approved 7p21.3 07p21.3 2009-03-06 2009-03-11 100129634 NG_010510 19123937 +HGNC:36996 RPL9P20 ribosomal protein L9 pseudogene 20 pseudogene pseudogene Approved 8p22 08p22 2009-03-06 2009-03-11 100130392 NG_010461 19123937 +HGNC:35886 RPL9P21 ribosomal protein L9 pseudogene 21 pseudogene pseudogene Approved 10q11.21 10q11.21 2009-03-06 2016-08-16 728374 ENSG00000214089 OTTHUMG00000018057 NG_010286 19123937 PGOHUM00000289826 +HGNC:36994 RPL9P22 ribosomal protein L9 pseudogene 22 pseudogene pseudogene Approved 11q14.1 11q14.1 2009-03-06 2009-03-11 100130066 NG_010079 19123937 +HGNC:36807 RPL9P23 ribosomal protein L9 pseudogene 23 pseudogene pseudogene Approved 11p12 11p12 2009-03-06 2009-03-11 100131020 NG_011057 19123937 +HGNC:36347 RPL9P24 ribosomal protein L9 pseudogene 24 pseudogene pseudogene Approved 12q23.2 12q23.2 2009-03-06 2009-03-11 100271045 NG_011017 19123937 +HGNC:36112 RPL9P25 ribosomal protein L9 pseudogene 25 pseudogene pseudogene Approved 15q22.31 15q22.31 2009-03-06 2009-03-11 654350 ENSG00000240821 OTTHUMG00000157975 NG_010052 19123937 +HGNC:35633 RPL9P26 ribosomal protein L9 pseudogene 26 pseudogene pseudogene Approved 15q11.2-q12 15q11.2-q12 2009-03-06 2009-03-11 100271227 NG_010635 19123937 +HGNC:37012 RPL9P27 ribosomal protein L9 pseudogene 27 pseudogene pseudogene Approved 15q15.1 15q15.1 2009-03-06 2009-03-11 100131246 NG_010904 19123937 +HGNC:36445 RPL9P28 ribosomal protein L9 pseudogene 28 pseudogene pseudogene Approved 17q21.32 17q21.32 2009-03-06 2009-03-11 729146 ENSG00000242067 OTTHUMG00000157876 NG_009675 19123937 +HGNC:35533 RPL9P29 ribosomal protein L9 pseudogene 29 pseudogene pseudogene Approved 17q25.3 17q25.3 2009-03-06 2009-03-11 100129357 ENSG00000267355 OTTHUMG00000157951 NG_010416 19123937 +HGNC:36316 RPL9P30 ribosomal protein L9 pseudogene 30 pseudogene pseudogene Approved 17q11.2 17q11.2 2009-03-06 2009-03-11 100128710 ENSG00000240074 OTTHUMG00000157781 NG_011028 19123937 +HGNC:36617 RPL9P31 ribosomal protein L9 pseudogene 31 pseudogene pseudogene Approved 18q21 18q21 2009-03-06 2009-03-11 100271228 ENSG00000239659 OTTHUMG00000158254 NG_010640 19123937 +HGNC:36418 RPL9P32 ribosomal protein L9 pseudogene 32 pseudogene pseudogene Approved 19q12 19q12 2009-03-06 2016-07-25 727865 ENSG00000242100 OTTHUMG00000158141 NG_010302 19123937 PGOHUM00000294973 +HGNC:36273 RPL9P33 ribosomal protein L9 pseudogene 33 pseudogene pseudogene Approved 19q13.41 19q13.41 2009-03-06 2016-10-05 100271229 ENSG00000244071 OTTHUMG00000158218 NG_010645 19123937 PGOHUM00000234746 +HGNC:10298 RPL10 ribosomal protein L10 protein-coding gene gene with protein product Approved Xq28 Xq28 "NOV|QM|DXS648E|DXS648|FLJ23544|L10" L ribosomal proteins 729 1998-07-23 2015-09-07 6134 ENSG00000147403 OTTHUMG00000033189 uc033fbd.1 AB007170 NM_006013 "CCDS14746|CCDS76059" P27635 9582194 MGI:105943 RGD:621178 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPL10 RPL10 312173 118393 +HGNC:10299 RPL10A ribosomal protein L10a protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "Csa-19|L10A" NEDD6 L ribosomal proteins 729 1994-01-21 2015-09-07 4736 ENSG00000198755 OTTHUMG00000014566 uc003okp.2 U12404 NM_007104 CCDS4806 P62906 "7609734|9647638" MGI:1343877 RGD:620497 RPL10A 615660 +HGNC:19813 RPL10AP1 ribosomal protein L10a pseudogene 1 pseudogene pseudogene Approved 14q32.32 14q32.32 2009-03-01 2014-11-18 319135 ENSG00000244691 OTTHUMG00000158148 NG_002513 19123937 PGOHUM00000247900 +HGNC:31081 RPL10AP2 ribosomal protein L10a pseudogene 2 pseudogene pseudogene Approved 8q11.21 08q11.21 2009-03-01 2014-11-19 253986 ENSG00000188873 OTTHUMG00000158610 NG_005655 19123937 +HGNC:29803 RPL10AP3 ribosomal protein L10a pseudogene 3 pseudogene pseudogene Approved 8p12 08p12 HsT23218 2009-03-01 2014-11-18 137107 ENSG00000215264 OTTHUMG00000158593 NG_009498 19123937 RPL10AP3 PGOHUM00000250005 +HGNC:35873 RPL10AP4 ribosomal protein L10a pseudogene 4 pseudogene pseudogene Approved 1p31.1 01p31.1 2009-03-06 2009-03-11 343301 NG_009989 19123937 +HGNC:36770 RPL10AP5 ribosomal protein L10a pseudogene 5 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2014-03-18 645998 ENSG00000235467 OTTHUMG00000039858 NG_009789 19123937 PGOHUM00000245281 +HGNC:36504 RPL10AP6 ribosomal protein L10a pseudogene 6 pseudogene pseudogene Approved 3p14.2 03p14.2 2009-03-06 2009-03-11 100128936 ENSG00000226360 OTTHUMG00000157304 NG_010877 19123937 +HGNC:35601 RPL10AP7 ribosomal protein L10a pseudogene 7 pseudogene pseudogene Approved 4p15.32 04p15.32 2009-03-06 2009-03-11 100128646 NG_010699 19123937 +HGNC:36709 RPL10AP8 ribosomal protein L10a pseudogene 8 pseudogene pseudogene Approved 5q13.2 05q13.2 2009-03-06 2009-03-11 644154 NG_010309 19123937 +HGNC:35947 RPL10AP9 ribosomal protein L10a pseudogene 9 pseudogene pseudogene Approved 5q14.3 05q14.3 2009-03-06 2009-03-11 728979 NG_010772 19123937 +HGNC:35971 RPL10AP10 ribosomal protein L10a pseudogene 10 pseudogene pseudogene Approved 5q31.2 05q31.2 2009-03-06 2009-03-11 391836 NG_010824 19123937 +HGNC:35875 RPL10AP11 ribosomal protein L10a pseudogene 11 pseudogene pseudogene Approved 8p22 08p22 2009-03-06 2009-03-11 392206 NG_010051 19123937 +HGNC:36108 RPL10AP12 ribosomal protein L10a pseudogene 12 pseudogene pseudogene Approved 16q24.1 16q24.1 2009-03-06 2009-03-11 401863 NG_009471 19123937 +HGNC:36155 RPL10AP13 ribosomal protein L10a pseudogene 13 pseudogene pseudogene Approved 18q12 18q12 2009-03-06 2009-03-11 100271602 NG_011250 19123937 +HGNC:17976 RPL10L ribosomal protein L10 like protein-coding gene gene with protein product Approved 14q21.2 14q21.2 ribosomal protein L10-like L ribosomal proteins 729 2009-03-01 2015-11-17 2015-11-17 140801 ENSG00000165496 OTTHUMG00000157869 uc001wwg.5 AB063608 NM_080746 CCDS32071 Q96L21 19123937 MGI:3647985 RGD:1305913 RPL10L +HGNC:10300 RPL10P1 ribosomal protein L10 pseudogene 1 pseudogene pseudogene Approved 21q21.3 21q21.3 RPL10P ribosomal protein L10 pseudogene 2009-03-01 2001-12-14 2001-12-07 2016-07-25 100288252 ENSG00000217026 OTTHUMG00000078695 NG_000911 19123937 PGOHUM00000297240 +HGNC:13975 RPL10P2 ribosomal protein L10 pseudogene 2 pseudogene pseudogene Approved 6p22.1 06p22.1 "RPL10p|bA209A2.1" 2009-03-01 2016-07-25 442171 ENSG00000174572 OTTHUMG00000014474 NG_009499 19123937 PGOHUM00000301698 +HGNC:23300 RPL10P3 ribosomal protein L10 pseudogene 3 pseudogene pseudogene Approved 9q33.1 09q33.1 bA567J2.2 2005-10-06 2016-07-25 619445 ENSG00000230734 OTTHUMG00000020559 NG_009502 PGOHUM00000304042 +HGNC:52342 RPL10P4 ribosomal protein L10 pseudogene 4 pseudogene pseudogene Approved 1q32.1 01q32.1 2016-07-25 2016-10-05 391151 ENSG00000238003 OTTHUMG00000035803 NG_005105 PGOHUM00000296723 +HGNC:35724 RPL10P5 ribosomal protein L10 pseudogene 5 pseudogene pseudogene Approved 2q13 02q13 2009-03-06 2016-07-25 644911 ENSG00000235644 OTTHUMG00000153421 NG_010252 19123937 PGOHUM00000298060 +HGNC:52343 RPL10P6 ribosomal protein L10 pseudogene 6 pseudogene pseudogene Approved 2q35 02q35 2016-07-25 2016-07-25 285176 ENSG00000230076 OTTHUMG00000154802 NG_009924 PGOHUM00000298876 +HGNC:35974 RPL10P7 ribosomal protein L10 pseudogene 7 pseudogene pseudogene Approved 3q13.33 03q13.33 2009-03-06 2016-07-25 442086 ENSG00000242052 OTTHUMG00000157355 NG_011185 19123937 PGOHUM00000299145 +HGNC:52344 RPL10P8 ribosomal protein L10 pseudogene 8 pseudogene pseudogene Approved 5q35.1 05q35.1 2016-07-25 2016-07-25 644937 ENSG00000254012 OTTHUMG00000163205 NG_009908 PGOHUM00000301181 +HGNC:35579 RPL10P9 ribosomal protein L10 pseudogene 9 pseudogene pseudogene Approved 5q34 05q34 2009-03-06 2016-07-25 389342 ENSG00000233913 OTTHUMG00000157935 NG_011151 19123937 +HGNC:35486 RPL10P10 ribosomal protein L10 pseudogene 10 pseudogene pseudogene Approved 6p12.1 06p12.1 2009-03-06 2016-07-25 100129930 ENSG00000216347 OTTHUMG00000014896 NG_010721 19123937 PGOHUM00000301392 +HGNC:36565 RPL10P11 ribosomal protein L10 pseudogene 11 pseudogene pseudogene Approved 7q21.11 07q21.11 2009-03-06 2016-07-25 100128030 ENSG00000230853 OTTHUMG00000156444 NG_010158 19123937 PGOHUM00000302329 +HGNC:52345 RPL10P12 ribosomal protein L10 pseudogene 12 pseudogene pseudogene Approved 12q15 12q15 2016-07-25 2016-07-25 645422 ENSG00000234040 OTTHUMG00000169262 NG_009853 PGOHUM00000291396 +HGNC:52346 RPL10P13 ribosomal protein L10 pseudogene 13 pseudogene pseudogene Approved 12q21.2 12q21.2 2016-07-25 2016-07-25 390345 ENSG00000258245 OTTHUMG00000169778 NG_009872 PGOHUM00000291407 +HGNC:43897 RPL10P14 ribosomal protein L10 pseudogene 14 pseudogene pseudogene Approved 16q12.1 16q12.1 2012-04-27 2016-07-25 390729 ENSG00000260031 OTTHUMG00000158143 NG_009909 PGOHUM00000293609 +HGNC:52347 RPL10P15 ribosomal protein L10 pseudogene 15 pseudogene pseudogene Approved 19p13.2 19p13.2 2016-07-25 2016-07-25 100129975 ENSG00000267119 OTTHUMG00000180213 NG_009916 PGOHUM00000295190 +HGNC:36882 RPL10P16 ribosomal protein L10 pseudogene 16 pseudogene pseudogene Approved 19p13.13 19p13.13 2009-03-06 2016-07-25 284393 ENSG00000178464 OTTHUMG00000156400 NG_011204 19123937 +HGNC:52348 RPL10P17 ribosomal protein L10 pseudogene 17 pseudogene pseudogene Approved 1p36.22 01p36.22 2016-07-26 2016-07-26 390998 ENSG00000225196 OTTHUMG00000004233 NG_023275 PGOHUM00000295547 +HGNC:52349 RPL10P18 ribosomal protein L10 pseudogene 18 pseudogene pseudogene Approved 8p12 08p12 2016-07-28 2016-07-28 100630920 ENSG00000253995 OTTHUMG00000163959 NG_029179 PGOHUM00000303503 +HGNC:52350 RPL10P19 ribosomal protein L10 pseudogene 19 pseudogene pseudogene Approved 8p23.1 08p23.1 2016-07-26 2016-07-26 645960 ENSG00000233609 OTTHUMG00000163695 NG_029128 PGOHUM00000303445 +HGNC:10301 RPL11 ribosomal protein L11 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 L11 L ribosomal proteins 729 1998-07-23 2016-10-05 6135 ENSG00000142676 OTTHUMG00000002926 uc001bhk.5 L05092 NM_000975 CCDS238 P62913 "9582194|10343117" MGI:1914275 RGD:1308681 Diamond-Blackfan Anemia|http://www.dbagenes.unito.it/home.php?select_db=RPL11 RPL11 604175 171055 +HGNC:37021 RPL11P1 ribosomal protein L11 pseudogene 1 pseudogene pseudogene Approved 2p14 02p14 2009-03-06 2009-03-11 100133170 NG_010269 19123937 +HGNC:36983 RPL11P2 ribosomal protein L11 pseudogene 2 pseudogene pseudogene Approved 5q23.3 05q23.3 2009-03-06 2009-03-11 133629 NG_009748 19123937 +HGNC:36342 RPL11P3 ribosomal protein L11 pseudogene 3 pseudogene pseudogene Approved 10q23.31 10q23.31 2009-03-06 2016-08-16 100271271 ENSG00000213613 OTTHUMG00000018687 NG_010870 19123937 PGOHUM00000290238 +HGNC:36137 RPL11P4 ribosomal protein L11 pseudogene 4 pseudogene pseudogene Approved 10q23.33 10q23.33 2009-03-06 2016-08-16 100271272 ENSG00000184111 OTTHUMG00000018760 NG_010874 19123937 PGOHUM00000289952 +HGNC:36849 RPL11P5 ribosomal protein L11 pseudogene 5 pseudogene pseudogene Approved 12q24.31 12q24.31 2009-03-06 2009-03-11 643499 ENSG00000242137 OTTHUMG00000157800 NG_009723 19123937 +HGNC:10302 RPL12 ribosomal protein L12 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 L12 L ribosomal proteins 729 1993-05-14 2016-10-05 6136 ENSG00000197958 OTTHUMG00000020704 uc004bqy.3 NM_000976 CCDS6872 P30050 8441690 MGI:98002 RGD:1565106 RPL12 180475 +HGNC:13976 RPL12P1 ribosomal protein L12 pseudogene 1 pseudogene pseudogene Approved 6p21.32 06p21.32 "RPL12-L|dJ570F3.5|CICK0721Q.1" 2009-03-01 2014-11-19 729727 ENSG00000204194 OTTHUMG00000031256 NG_006554 19123937 +HGNC:16070 RPL12P2 ribosomal protein L12 pseudogene 2 pseudogene pseudogene Approved 6p21.2 06p21.2 dJ441G21.1 2009-03-01 2015-10-07 646875 ENSG00000216412 OTTHUMG00000014617 NG_009503 19123937 PGOHUM00000301781 +HGNC:16335 RPL12P3 ribosomal protein L12 pseudogene 3 pseudogene pseudogene Approved 20q11.21 20q11.21 bA49G10.7 2009-03-01 2015-10-07 128862 ENSG00000233106 OTTHUMG00000032250 AL121901 NG_000978 19123937 PGOHUM00000296975 +HGNC:16587 RPL12P4 ribosomal protein L12 pseudogene 4 pseudogene pseudogene Approved 20q13.2 20q13.2 dJ800C24.1 2009-03-01 2015-10-07 116149 ENSG00000185834 OTTHUMG00000032779 AL121593 NG_000962 19123937 PGOHUM00000297145 +HGNC:19669 RPL12P5 ribosomal protein L12 pseudogene 5 pseudogene pseudogene Approved 14q12 14q12 2009-03-01 2015-10-07 319142 ENSG00000243855 OTTHUMG00000157709 NG_002518 19123937 PGOHUM00000292611 +HGNC:23538 RPL12P6 ribosomal protein L12 pseudogene 6 pseudogene pseudogene Approved 14q13.1 14q13.1 2009-03-01 2015-10-07 440176 ENSG00000243824 OTTHUMG00000158031 NG_009696 19123937 PGOHUM00000292319 +HGNC:19782 RPL12P7 ribosomal protein L12 pseudogene 7 pseudogene pseudogene Approved 14q24.1 14q24.1 2009-03-01 2015-10-07 326275 ENSG00000242941 OTTHUMG00000157970 NG_002535 19123937 PGOHUM00000292711 +HGNC:23735 RPL12P8 ribosomal protein L12 pseudogene 8 pseudogene pseudogene Approved 10q21.3 10q21.3 bA57G10.3 2009-03-01 2015-10-07 645161 ENSG00000219932 OTTHUMG00000018337 NG_006101 19123937 PGOHUM00000290189 +HGNC:23766 RPL12P9 ribosomal protein L12 pseudogene 9 pseudogene pseudogene Approved 21q21.3 21q21.3 2009-03-01 2015-10-07 654376 ENSG00000232687 OTTHUMG00000155485 AF129075 NG_009547 19123937 PGOHUM00000297244 +HGNC:22583 RPL12P10 ribosomal protein L12 pseudogene 10 pseudogene pseudogene Approved 7p15.3 07p15.3 TCAG_1783340 2009-03-01 2015-10-07 392872 ENSG00000226279 OTTHUMG00000152581 AC005682 NG_005576 19123937 PGOHUM00000302549 +HGNC:15835 RPL12P11 ribosomal protein L12 pseudogene 11 pseudogene pseudogene Approved 20q12 20q12 dJ661I20.1 RPL12L2 ribosomal protein L12-like 2 2009-03-01 2009-01-23 2009-03-02 2015-10-07 128467 ENSG00000232493 OTTHUMG00000032488 AL031669 NG_000964 19123937 PGOHUM00000297122 +HGNC:15951 RPL12P12 ribosomal protein L12 pseudogene 12 pseudogene pseudogene Approved 20p11.23 20p11.23 dJ999L4.1 RPL12L3 ribosomal protein L12-like 3 2009-03-01 2009-01-23 2009-03-02 2015-10-07 85824 ENSG00000236992 OTTHUMG00000031995 NG_000945 19123937 +HGNC:51936 RPL12P13 ribosomal protein L12 pseudogene 13 pseudogene pseudogene Approved 1p36.11 01p36.11 2015-10-07 2015-10-07 100129926 ENSG00000172746 OTTHUMG00000004274 NG_009912 PGOHUM00000296255 +HGNC:36495 RPL12P14 ribosomal protein L12 pseudogene 14 pseudogene pseudogene Approved 1p36.21 01p36.21 2009-03-06 2015-10-07 729500 ENSG00000224321 OTTHUMG00000003108 NG_010822 19123937 PGOHUM00000296225 +HGNC:36619 RPL12P15 ribosomal protein L12 pseudogene 15 pseudogene pseudogene Approved 2q14.3 02q14.3 2009-03-06 2015-10-07 100270920 ENSG00000230993 OTTHUMG00000155143 NG_010384 19123937 PGOHUM00000298089 +HGNC:36926 RPL12P16 ribosomal protein L12 pseudogene 16 pseudogene pseudogene Approved 2q33.2 02q33.2 2009-03-06 2015-10-07 100130447 ENSG00000204196 OTTHUMG00000155492 NG_010751 19123937 +HGNC:36263 RPL12P17 ribosomal protein L12 pseudogene 17 pseudogene pseudogene Approved 2q33.3 02q33.3 2009-03-06 2015-10-07 344471 ENSG00000224839 OTTHUMG00000154788 NG_010797 19123937 PGOHUM00000298303 +HGNC:36750 RPL12P18 ribosomal protein L12 pseudogene 18 pseudogene pseudogene Approved 2p11.2 02p11.2 2009-03-06 2015-10-07 729760 ENSG00000213400 OTTHUMG00000152921 NG_010841 19123937 PGOHUM00000298494 +HGNC:36248 RPL12P19 ribosomal protein L12 pseudogene 19 pseudogene pseudogene Approved 2p21 02p21 2009-03-06 2015-10-07 100129982 ENSG00000226972 OTTHUMG00000152783 NG_009586 19123937 PGOHUM00000298425 +HGNC:36968 RPL12P20 ribosomal protein L12 pseudogene 20 pseudogene pseudogene Approved 4p13 04p13 2009-03-06 2015-10-07 100270923 ENSG00000239627 OTTHUMG00000157453 NG_010400 19123937 PGOHUM00000300186 +HGNC:36845 RPL12P21 ribosomal protein L12 pseudogene 21 pseudogene pseudogene Approved 5q31.2 05q31.2 2009-03-06 2016-10-05 100270921 ENSG00000242683 OTTHUMG00000157868 NG_010390 19123937 PGOHUM00000300771 +HGNC:35762 RPL12P22 ribosomal protein L12 pseudogene 22 pseudogene pseudogene Approved 5q35.2 05q35.2 2009-03-06 2015-10-07 100270922 ENSG00000253109 OTTHUMG00000157945 NG_010396 19123937 PGOHUM00000300825 +HGNC:36408 RPL12P23 ribosomal protein L12 pseudogene 23 pseudogene pseudogene Approved 6q27 06q27 2009-03-06 2015-10-07 100270925 ENSG00000218716 OTTHUMG00000016074 NG_010412 19123937 PGOHUM00000302019 +HGNC:35952 RPL12P24 ribosomal protein L12 pseudogene 24 pseudogene pseudogene Approved 8q23.1 08q23.1 2009-03-06 2015-10-07 100270924 ENSG00000243601 OTTHUMG00000158681 NG_010406 19123937 PGOHUM00000303346 +HGNC:37008 RPL12P25 ribosomal protein L12 pseudogene 25 pseudogene pseudogene Approved 9p24.3 09p24.3 2009-03-06 2015-10-07 100270926 ENSG00000235330 OTTHUMG00000019430 NG_010417 19123937 PGOHUM00000304072 +HGNC:36811 RPL12P26 ribosomal protein L12 pseudogene 26 pseudogene pseudogene Approved 10q25.3 10q25.3 2009-03-06 2015-10-07 100271404 ENSG00000236171 OTTHUMG00000019118 NG_010240 19123937 PGOHUM00000289999 +HGNC:36916 RPL12P27 ribosomal protein L12 pseudogene 27 pseudogene pseudogene Approved 10q24.1 10q24.1 2009-03-06 2015-10-07 644202 ENSG00000237169 OTTHUMG00000018849 NG_010551 19123937 PGOHUM00000289969 +HGNC:36818 RPL12P28 ribosomal protein L12 pseudogene 28 pseudogene pseudogene Approved 10p15.1 10p15.1 2009-03-06 2015-10-07 100271273 ENSG00000240180 OTTHUMG00000017606 NG_010880 19123937 +HGNC:35791 RPL12P29 ribosomal protein L12 pseudogene 29 pseudogene pseudogene Approved 10q23.1 10q23.1 2009-03-06 2015-10-07 100271274 ENSG00000233189 OTTHUMG00000018639 NG_010886 19123937 PGOHUM00000289935 +HGNC:35970 RPL12P30 ribosomal protein L12 pseudogene 30 pseudogene pseudogene Approved 11p14.1 11p14.1 2009-03-06 2015-10-07 100271405 ENSG00000242353 OTTHUMG00000158338 NG_010243 19123937 PGOHUM00000290861 +HGNC:37025 RPL12P31 ribosomal protein L12 pseudogene 31 pseudogene pseudogene Approved 11p13 11p13 2009-03-06 2015-10-07 100271406 ENSG00000241228 OTTHUMG00000158347 NG_010248 19123937 PGOHUM00000290437 +HGNC:36597 RPL12P32 ribosomal protein L12 pseudogene 32 pseudogene pseudogene Approved 12p11.21 12p11.21 2009-03-06 2015-10-07 100132795 ENSG00000242314 OTTHUMG00000157529 NG_010966 19123937 PGOHUM00000291611 +HGNC:35696 RPL12P33 ribosomal protein L12 pseudogene 33 pseudogene pseudogene Approved 12q24.31 12q24.31 2009-03-06 2015-10-07 643550 ENSG00000244585 OTTHUMG00000169146 NG_011149 19123937 PGOHUM00000291823 +HGNC:36168 RPL12P34 ribosomal protein L12 pseudogene 34 pseudogene pseudogene Approved 13q21.33 13q21.33 2009-03-06 2015-10-07 100271407 ENSG00000229824 OTTHUMG00000017049 NG_010251 19123937 PGOHUM00000292183 +HGNC:35969 RPL12P35 ribosomal protein L12 pseudogene 35 pseudogene pseudogene Approved 15q23 15q23 2009-03-06 2015-10-07 400389 ENSG00000243007 OTTHUMG00000158018 NG_009987 19123937 PGOHUM00000293003 +HGNC:36598 RPL12P36 ribosomal protein L12 pseudogene 36 pseudogene pseudogene Approved 16q21 16q21 2009-03-06 2015-10-07 100271408 ENSG00000242423 OTTHUMG00000158154 NG_010255 19123937 PGOHUM00000293883 +HGNC:35565 RPL12P37 ribosomal protein L12 pseudogene 37 pseudogene pseudogene Approved 17q25.3 17q25.3 2009-03-06 2015-10-07 100129801 ENSG00000240270 OTTHUMG00000157963 NG_010016 19123937 PGOHUM00000294556 +HGNC:36838 RPL12P38 ribosomal protein L12 pseudogene 38 pseudogene pseudogene Approved 17q23.2 17q23.2 2009-03-06 2015-10-07 645688 ENSG00000213228 OTTHUMG00000157897 NG_010298 19123937 PGOHUM00000294172 +HGNC:35976 RPL12P39 ribosomal protein L12 pseudogene 39 pseudogene pseudogene Approved 18q22.1 18q22.1 2009-03-06 2015-10-07 100271410 ENSG00000237314 OTTHUMG00000060595 NG_010266 19123937 PGOHUM00000294813 +HGNC:36439 RPL12P40 ribosomal protein L12 pseudogene 40 pseudogene pseudogene Approved 18q12.2 18q12.2 2009-03-06 2015-10-07 646898 ENSG00000243516 OTTHUMG00000158235 NG_009756 19123937 PGOHUM00000294769 +HGNC:35999 RPL12P41 ribosomal protein L12 pseudogene 41 pseudogene pseudogene Approved 19q13.32 19q13.32 2009-03-06 2015-10-07 100133139 ENSG00000269637 OTTHUMG00000182499 NG_010084 19123937 PGOHUM00000295393 +HGNC:36165 RPL12P42 ribosomal protein L12 pseudogene 42 pseudogene pseudogene Approved 19p13.13 19p13.13 2009-03-06 2015-10-07 100129394 ENSG00000213253 OTTHUMG00000158033 NG_010590 19123937 PGOHUM00000294883 +HGNC:35840 RPL12P43 ribosomal protein L12 pseudogene 43 pseudogene pseudogene Approved Xq24 Xq24 2009-03-06 2015-10-07 100271387 ENSG00000234524 OTTHUMG00000040069 NG_010137 19123937 PGOHUM00000305272 +HGNC:44603 RPL12P44 ribosomal protein L12 pseudogene 44 pseudogene pseudogene Approved 3p21.31 03p21.31 2012-11-19 2015-10-07 100419392 ENSG00000227123 OTTHUMG00000156997 NG_025693 PGOHUM00000299423 +HGNC:51937 RPL12P45 ribosomal protein L12 pseudogene 45 pseudogene pseudogene Approved 1p34.3 01p34.3 2015-10-07 2015-10-07 100419477 ENSG00000233940 OTTHUMG00000004160 NG_027077 PGOHUM00000296277 +HGNC:51938 RPL12P46 ribosomal protein L12 pseudogene 46 pseudogene pseudogene Approved 11q23.3 11q23.3 2015-10-07 2015-10-07 107075251 ENSG00000255903 OTTHUMG00000168239 NG_046546 PGOHUM00000291144 +HGNC:51939 RPL12P47 ribosomal protein L12 pseudogene 47 pseudogene pseudogene Approved 6p21.1 06p21.1 2015-10-07 2015-10-07 107075115 ENSG00000219222 OTTHUMG00000014728 NG_046547 PGOHUM00000301797 +HGNC:51940 RPL12P48 ribosomal protein L12 pseudogene 48 pseudogene pseudogene Approved 8p11.23 08p11.23 2015-10-07 2015-10-07 101926938 ENSG00000270865 OTTHUMG00000184791 PGOHUM00000303510 +HGNC:51941 RPL12P49 ribosomal protein L12 pseudogene 49 pseudogene pseudogene Approved Xp22.2 Xp22.2 2015-10-07 2015-10-07 107075252 ENSG00000230180 OTTHUMG00000021195 PGOHUM00000304955 +HGNC:51942 RPL12P50 ribosomal protein L12 pseudogene 50 pseudogene pseudogene Approved Xq28 Xq28 2015-10-07 2015-10-07 107075212 ENSG00000270916 OTTHUMG00000185066 PGOHUM00000304901 +HGNC:10303 RPL13 ribosomal protein L13 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "D16S444E|BBC1|L13" 1998-07-23 2014-11-18 6137 ENSG00000167526 OTTHUMG00000133770 uc002fnm.3 AB007172 NM_000977 "CCDS10979|CCDS58492" P26373 9582194 MGI:105922 RGD:621179 RPL13 113703 +HGNC:10304 RPL13A ribosomal protein L13a protein-coding gene gene with protein product Approved 19q13.33 19q13.33 L13A TSTA1 tissue specific transplantation antigen 1 L ribosomal proteins 729 1999-10-12 2016-10-05 23521 ENSG00000142541 OTTHUMG00000134289 uc002pny.5 X56932 NM_012423 "CCDS12768|CCDS74421" P40429 MGI:1351455 RGD:628697 RPL13A +HGNC:13977 RPL13AP ribosomal protein L13a pseudogene pseudogene pseudogene Approved 6p21.3 06p21.3 "RPL13Ap|dJ271M21.3" 2009-03-01 2014-11-19 387043 ENSG00000231301 OTTHUMG00000031039 NG_011172 19123937 +HGNC:19675 RPL13AP2 ribosomal protein L13a pseudogene 2 pseudogene pseudogene Approved 14q21.3 14q21.3 2009-03-01 2014-11-19 326278 ENSG00000244053 OTTHUMG00000157872 NG_002538 19123937 +HGNC:23539 RPL13AP3 ribosomal protein L13a pseudogene 3 pseudogene pseudogene Approved 14q22.3 14q22.3 2009-03-01 2014-11-18 645683 ENSG00000177350 OTTHUMG00000158048 AL355773 NG_009565 Q6NVV1 19123937 +HGNC:23736 RPL13AP5 ribosomal protein L13a pseudogene 5 pseudogene pseudogene Approved 10q24.1 10q24.1 bA196N24.2 2009-03-01 2016-08-17 728658 ENSG00000236552 OTTHUMG00000018837 NR_026712 19123937 +HGNC:23737 RPL13AP6 ribosomal protein L13a pseudogene 6 pseudogene pseudogene Approved 10q25.2 10q25.2 bA348N5.5 2009-03-01 2016-08-17 644511 ENSG00000234118 OTTHUMG00000019049 NR_026715 19123937 PGOHUM00000289990 +HGNC:23755 RPL13AP7 ribosomal protein L13a pseudogene 7 pseudogene pseudogene Approved 21q21.2 21q21.2 2009-03-01 2014-11-18 284821 ENSG00000213885 OTTHUMG00000078369 NG_009777 19123937 PGOHUM00000239157 +HGNC:36966 RPL13AP8 ribosomal protein L13a pseudogene 8 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 727831 NG_009083 19123937 +HGNC:36341 RPL13AP9 ribosomal protein L13a pseudogene 9 pseudogene pseudogene Approved 1p31.3 01p31.3 2009-03-06 2009-03-11 100271137 NG_010176 19123937 +HGNC:36864 RPL13AP10 ribosomal protein L13a pseudogene 10 pseudogene pseudogene Approved 1p13.2 01p13.2 2009-03-06 2009-03-11 100132906 NG_010229 19123937 +HGNC:36566 RPL13AP11 ribosomal protein L13a pseudogene 11 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 100271276 NG_010895 19123937 +HGNC:35673 RPL13AP12 ribosomal protein L13a pseudogene 12 pseudogene pseudogene Approved 2q33-q34 02q33-q34 2009-03-06 2009-03-11 100271277 NG_010898 19123937 +HGNC:36541 RPL13AP13 ribosomal protein L13a pseudogene 13 pseudogene pseudogene Approved 5q11.2 05q11.2 2009-03-06 2009-03-11 402214 NG_010205 19123937 +HGNC:36360 RPL13AP14 ribosomal protein L13a pseudogene 14 pseudogene pseudogene Approved 5q14.3 05q14.3 2009-03-06 2009-03-11 100271278 NG_010902 19123937 +HGNC:36883 RPL13AP15 ribosomal protein L13a pseudogene 15 pseudogene pseudogene Approved 6q22 06q22 2009-03-06 2009-03-11 100271279 NG_010909 19123937 +HGNC:35722 RPL13AP16 ribosomal protein L13a pseudogene 16 pseudogene pseudogene Approved 7q22.2 07q22.2 2009-03-06 2009-03-11 100129553 NG_010071 19123937 +HGNC:36167 RPL13AP17 ribosomal protein L13a pseudogene 17 pseudogene pseudogene Approved 7q21.11 07q21.11 2009-03-06 2014-11-18 399670 ENSG00000231322 OTTHUMG00000155514 NR_003680 19123937 +HGNC:36593 RPL13AP18 ribosomal protein L13a pseudogene 18 pseudogene pseudogene Approved 8q21.13 08q21.13 2009-03-06 2009-03-11 402342 NG_010866 19123937 +HGNC:35855 RPL13AP19 ribosomal protein L13a pseudogene 19 pseudogene pseudogene Approved 10q11.23 10q11.23 2009-03-06 2016-08-17 100132924 ENSG00000228754 OTTHUMG00000018177 NG_010319 19123937 PGOHUM00000289858 +HGNC:35709 RPL13AP20 ribosomal protein L13a pseudogene 20 pseudogene pseudogene Approved 12p13.1 12p13.1 2009-03-06 2010-06-16 387841 ENSG00000234498 NR_003932 19123937 +HGNC:35654 RPL13AP21 ribosomal protein L13a pseudogene 21 pseudogene pseudogene Approved 12q13.11 12q13.11 2009-03-06 2009-03-11 100129799 NG_010004 19123937 +HGNC:35825 RPL13AP22 ribosomal protein L13a pseudogene 22 pseudogene pseudogene Approved 12p11.21 12p11.21 2009-03-06 2009-03-11 441632 NG_010172 19123937 +HGNC:36498 RPL13AP23 ribosomal protein L13a pseudogene 23 pseudogene pseudogene Approved 12q13.3 12q13.3 2009-03-06 2016-10-05 441641 ENSG00000242990 OTTHUMG00000157582 NG_010224 19123937 PGOHUM00000291692 +HGNC:36209 RPL13AP24 ribosomal protein L13a pseudogene 24 pseudogene pseudogene Approved 12p13.3-p13.2 12p13.3-p13.2 2009-03-06 2009-03-11 100271603 NG_011259 19123937 +HGNC:36981 RPL13AP25 ribosomal protein L13a pseudogene 25 pseudogene pseudogene Approved 13q14.3 13q14.3 2009-03-06 2014-11-18 100287887 ENSG00000136149 OTTHUMG00000016985 NG_012730 19123937 RPL13AP25 +HGNC:35492 RPL13AP26 ribosomal protein L13a pseudogene 26 pseudogene pseudogene Approved 22q12.2 22q12.2 2009-03-06 2009-03-11 729212 NG_010641 19123937 +HGNC:13978 RPL13P ribosomal protein L13 pseudogene pseudogene pseudogene Approved 6p21 06p21 "BBC1p|dJ111M5.1" 2009-03-01 2014-11-19 387044 ENSG00000213916 OTTHUMG00000031243 NG_009510 19123937 +HGNC:16342 RPL13P2 ribosomal protein L13 pseudogene 2 pseudogene pseudogene Approved 20q13.12 20q13.12 dJ599F21.2 RPL13P3 ribosomal protein L13 pseudogene 3 2009-03-01 2002-01-15 2016-07-25 128500 ENSG00000213820 OTTHUMG00000032642 NG_000966 19123937 PGOHUM00000297128 +HGNC:31027 RPL13P4 ribosomal protein L13 pseudogene 4 pseudogene pseudogene Approved 15q24.2 15q24.2 HsT16723 2009-03-01 2014-11-19 654383 ENSG00000241890 OTTHUMG00000158030 AC105137 NG_009554 19123937 +HGNC:30363 RPL13P5 ribosomal protein L13 pseudogene 5 pseudogene pseudogene Approved 12p13.31 12p13.31 RPL13-2 RPL13L ribosomal protein L13-like 2009-03-01 2009-01-23 2009-01-23 2014-11-19 283345 U72513 NR_002803 19123937 +HGNC:19809 RPL13P6 ribosomal protein L13 pseudogene 6 pseudogene pseudogene Approved 14q32.32 14q32.32 RPL13AP4 ribosomal protein L13a pseudogene 4 2009-03-01 2009-02-20 2009-02-20 2014-11-18 100129176 ENSG00000213176 OTTHUMG00000158135 NG_010805 19123937 PGOHUM00000248271 +HGNC:35510 RPL13P7 ribosomal protein L13 pseudogene 7 pseudogene pseudogene Approved 1q25.2 01q25.2 2009-03-06 2009-03-11 391140 NG_011178 19123937 +HGNC:35513 RPL13P8 ribosomal protein L13 pseudogene 8 pseudogene pseudogene Approved 3q13.13 03q13.13 2009-03-06 2009-03-11 100270928 NG_010428 19123937 +HGNC:36587 RPL13P9 ribosomal protein L13 pseudogene 9 pseudogene pseudogene Approved 5q13-q14 05q13-q14 2009-03-06 2009-03-11 100270927 NG_010421 19123937 +HGNC:35943 RPL13P10 ribosomal protein L13 pseudogene 10 pseudogene pseudogene Approved 5q35.3 05q35.3 2009-03-06 2009-03-11 100133108 NG_011268 19123937 +HGNC:35805 RPL13P11 ribosomal protein L13 pseudogene 11 pseudogene pseudogene Approved 8q13.3 08q13.3 2009-03-06 2009-03-11 100130225 NG_010921 19123937 +HGNC:35701 RPL13P12 ribosomal protein L13 pseudogene 12 pseudogene pseudogene Approved 17p11.2 17p11.2 2009-03-06 2009-03-11 388344 ENSG00000215030 OTTHUMG00000059294 NG_007541 19123937 +HGNC:36832 RPL13P13 ribosomal protein L13 pseudogene 13 pseudogene pseudogene Approved 19q13.43 19q13.43 2009-03-06 2009-03-11 100129796 NG_009982 19123937 +HGNC:36387 RPL13P14 ribosomal protein L13 pseudogene 14 pseudogene pseudogene Approved 20q13.12 20q13.12 2009-03-06 2009-03-11 100130374 NG_010376 19123937 +HGNC:10305 RPL14 ribosomal protein L14 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "L14|hRL14|RL14|CTG-B33" "CAG-ISL 7|60S ribosomal protein L14" L ribosomal proteins 729 1999-01-26 2016-10-05 9045 ENSG00000188846 OTTHUMG00000156046 uc003ckg.5 D87735 NM_003973 "CCDS33739|CCDS43070" P50914 9480843 MGI:1914365 RGD:621180 RPL14 +HGNC:31384 RPL14P1 ribosomal protein L14 pseudogene 1 pseudogene pseudogene Approved 12q14.2 12q14.2 bcm1298 60S ribosomal protein L14 RPL14L ribosomal protein L14-like 2009-03-01 2009-01-23 2009-01-23 2014-11-19 144581 ENSG00000139239 OTTHUMG00000157598 NG_009597 19123937 +HGNC:35962 RPL14P2 ribosomal protein L14 pseudogene 2 pseudogene pseudogene Approved 3p14.2 03p14.2 2009-03-06 2009-03-11 100270930 NG_010436 19123937 +HGNC:36638 RPL14P3 ribosomal protein L14 pseudogene 3 pseudogene pseudogene Approved 4q31.1 04q31.1 2009-03-06 2014-05-22 730747 ENSG00000241923 OTTHUMG00000157571 NG_010438 19123937 PGOHUM00000245711 +HGNC:35663 RPL14P4 ribosomal protein L14 pseudogene 4 pseudogene pseudogene Approved 12q22 12q22 2009-03-06 2009-03-11 100271282 NG_010923 19123937 +HGNC:37720 RPL14P5 ribosomal protein L14 pseudogene 5 pseudogene pseudogene Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 2010-02-04 2014-11-19 442442 ENSG00000225661 OTTHUMG00000021055 NG_009084 RPL14P5 PGOHUM00000241165 +HGNC:10306 RPL15 ribosomal protein L15 protein-coding gene gene with protein product Approved 3p24.2 03p24.2 "RPL10|RPLY10|RPYL10|EC45|L15" L ribosomal proteins 729 1998-07-23 2016-10-05 6138 ENSG00000174748 OTTHUMG00000130485 uc003ccn.4 AB007173 NM_002948 "CCDS2640|CCDS58818" P61313 9582194 MGI:1913730 RGD:621181 RPL15 604174 376603 +HGNC:16583 RPL15P1 ribosomal protein L15 pseudogene 1 pseudogene pseudogene Approved 20p11.23 20p11.23 dJ726N1.3 2009-03-01 2016-07-25 128756 ENSG00000227343 OTTHUMG00000031959 AL160411 NG_000975 19123937 PGOHUM00000296910 +HGNC:19803 RPL15P2 ribosomal protein L15 pseudogene 2 pseudogene pseudogene Approved 14q32.13 14q32.13 2009-03-01 2014-11-18 326279 ENSG00000240914 OTTHUMG00000158125 NG_002539 19123937 +HGNC:21538 RPL15P3 ribosomal protein L15 pseudogene 3 pseudogene pseudogene Approved 6p24.1 06p24.1 bA511S14.1 2009-03-01 2014-11-18 653232 ENSG00000212802 OTTHUMG00000014268 NG_008796 19123937 +HGNC:21663 RPL15P4 ribosomal protein L15 pseudogene 4 pseudogene pseudogene Approved 6p21.33 06p21.33 Em:AC006046.2 2009-03-01 2014-11-18 100129921 ENSG00000225499 OTTHUMG00000031122 NG_009512 19123937 +HGNC:35746 RPL15P5 ribosomal protein L15 pseudogene 5 pseudogene pseudogene Approved 2q22.1 02q22.1 2009-03-06 2009-03-11 100127993 NG_011291 19123937 +HGNC:36185 RPL15P6 ribosomal protein L15 pseudogene 6 pseudogene pseudogene Approved 3q25.32 03q25.32 2009-03-06 2009-03-11 100270933 NG_010448 19123937 +HGNC:36808 RPL15P7 ribosomal protein L15 pseudogene 7 pseudogene pseudogene Approved 4p12 04p12 2009-03-06 2009-03-11 728576 NG_009957 19123937 +HGNC:36390 RPL15P8 ribosomal protein L15 pseudogene 8 pseudogene pseudogene Approved 4q28.2 04q28.2 2009-03-06 2009-03-11 100270934 NG_010451 19123937 +HGNC:36466 RPL15P9 ribosomal protein L15 pseudogene 9 pseudogene pseudogene Approved 6q22 06q22 2009-03-06 2009-03-11 100270935 NG_010454 19123937 +HGNC:36093 RPL15P11 ribosomal protein L15 pseudogene 11 pseudogene pseudogene Approved 7q33 07q33 2009-03-06 2009-03-11 402694 NG_009995 19123937 +HGNC:35529 RPL15P12 ribosomal protein L15 pseudogene 12 pseudogene pseudogene Approved 8q24.21 08q24.21 2009-03-06 2009-03-11 100131958 NG_010613 19123937 +HGNC:35915 RPL15P13 ribosomal protein L15 pseudogene 13 pseudogene pseudogene Approved 10q25.3 10q25.3 2009-03-06 2016-08-16 100131338 ENSG00000226428 OTTHUMG00000019093 NG_010020 19123937 PGOHUM00000290290 +HGNC:36487 RPL15P14 ribosomal protein L15 pseudogene 14 pseudogene pseudogene Approved 10q22.1 10q22.1 2009-03-06 2016-08-17 100271283 ENSG00000226701 OTTHUMG00000018432 NG_010927 19123937 PGOHUM00000290199 +HGNC:36780 RPL15P15 ribosomal protein L15 pseudogene 15 pseudogene pseudogene Approved 11q23.2 11q23.2 2009-03-06 2009-03-11 100128347 NG_010477 19123937 +HGNC:36067 RPL15P16 ribosomal protein L15 pseudogene 16 pseudogene pseudogene Approved 11q13.4 11q13.4 2009-03-06 2009-03-11 100127949 NG_011061 19123937 +HGNC:36852 RPL15P17 ribosomal protein L15 pseudogene 17 pseudogene pseudogene Approved 12p13.31 12p13.31 2009-03-06 2009-03-11 728002 NG_011003 19123937 +HGNC:36515 RPL15P18 ribosomal protein L15 pseudogene 18 pseudogene pseudogene Approved 13q32.3 13q32.3 2009-03-06 2011-01-14 728088 ENSG00000228501 OTTHUMG00000017283 NG_010118 19123937 PGOHUM00000248483 +HGNC:36130 RPL15P20 ribosomal protein L15 pseudogene 20 pseudogene pseudogene Approved 16p13.11 16p13.11 2009-03-06 2009-03-11 646672 ENSG00000215003 OTTHUMG00000158104 NG_010064 19123937 +HGNC:36190 RPL15P21 ribosomal protein L15 pseudogene 21 pseudogene pseudogene Approved 17p13.1 17p13.1 2009-03-06 2009-03-11 100132722 ENSG00000244753 OTTHUMG00000157731 NG_010592 19123937 +HGNC:36933 RPL15P22 ribosomal protein L15 pseudogene 22 pseudogene pseudogene Approved 22q12.1 22q12.1 2009-03-06 2009-03-11 100130624 NG_010342 19123937 +HGNC:10307 RPL17 ribosomal protein L17 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "rpL23|L17" L ribosomal proteins 729 1991-12-17 2016-10-05 6139 ENSG00000265681 OTTHUMG00000179680 uc002ldq.4 AB007174 NM_000985 "CCDS45865|CCDS56070" P18621 "2402465|9582194" MGI:2448270 RGD:1303019 RPL17 603661 +HGNC:44661 RPL17-C18orf32 RPL17-C18orf32 readthrough other readthrough Approved 18q21.1 18q21.1 2012-12-12 2012-12-12 100526842 ENSG00000215472 OTTHUMG00000179689 uc002ldm.3 NM_001199355 "CCDS58622|CCDS62443" MGI:3642619 +HGNC:10308 RPL17L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:16559 RPL17P1 ribosomal protein L17 pseudogene 1 pseudogene pseudogene Approved 20p11.23 20p11.23 dJ1178H5.1 2009-03-01 2016-07-25 140748 ENSG00000229500 OTTHUMG00000032003 NG_000991 19123937 PGOHUM00000296914 +HGNC:23540 RPL17P2 ribosomal protein L17 pseudogene 2 pseudogene pseudogene Approved 14q23.1 14q23.1 2009-03-01 2014-11-19 652974 ENSG00000242135 OTTHUMG00000157939 AL157756 NG_009524 19123937 PGOHUM00000247815 +HGNC:19796 RPL17P3 ribosomal protein L17 pseudogene 3 pseudogene pseudogene Approved 14q31.1 14q31.1 2003-01-13 2013-09-24 326286 ENSG00000271705 OTTHUMG00000184421 NG_002540 PGOHUM00000247871 +HGNC:19811 RPL17P4 ribosomal protein L17 pseudogene 4 pseudogene pseudogene Approved 14q32.32 14q32.32 2009-03-01 2014-11-19 326288 NG_002541 19123937 +HGNC:35491 RPL17P5 ribosomal protein L17 pseudogene 5 pseudogene pseudogene Approved 1p22.3 01p22.3 2009-03-06 2009-03-11 388132 NG_011404 19123937 +HGNC:36520 RPL17P6 ribosomal protein L17 pseudogene 6 pseudogene pseudogene Approved 1p31.1 01p31.1 2009-03-06 2009-03-11 645441 NG_010347 19123937 +HGNC:36005 RPL17P7 ribosomal protein L17 pseudogene 7 pseudogene pseudogene Approved 1p13.3 01p13.3 2009-03-06 2009-03-11 100132742 NG_010702 19123937 +HGNC:35651 RPL17P8 ribosomal protein L17 pseudogene 8 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 730255 NG_010750 19123937 +HGNC:36230 RPL17P9 ribosomal protein L17 pseudogene 9 pseudogene pseudogene Approved 1p36.11 01p36.11 2009-03-06 2009-03-11 729301 NG_011099 19123937 +HGNC:35838 RPL17P10 ribosomal protein L17 pseudogene 10 pseudogene pseudogene Approved 2q31.3 02q31.3 2009-03-06 2009-03-11 100270936 NG_010458 19123937 +HGNC:36509 RPL17P11 ribosomal protein L17 pseudogene 11 pseudogene pseudogene Approved 2q37.1 02q37.1 2009-03-06 2016-08-01 100270937 ENSG00000233445 OTTHUMG00000059030 NG_002601 19123937 PGOHUM00000298354 +HGNC:36779 RPL17P12 ribosomal protein L17 pseudogene 12 pseudogene pseudogene Approved 2q22.3 02q22.3 2009-03-06 2013-09-24 100270938 ENSG00000230559 OTTHUMG00000153720 NG_010467 19123937 PGOHUM00000263105 +HGNC:36378 RPL17P13 ribosomal protein L17 pseudogene 13 pseudogene pseudogene Approved 2q23.2 02q23.2 2009-03-06 2009-03-11 100270939 NG_010475 19123937 +HGNC:35806 RPL17P14 ribosomal protein L17 pseudogene 14 pseudogene pseudogene Approved 2q36.3 02q36.3 2009-03-06 2009-03-11 100270941 NG_010484 19123937 +HGNC:36889 RPL17P15 ribosomal protein L17 pseudogene 15 pseudogene pseudogene Approved 2q14.2 02q14.2 2009-03-06 2009-03-11 100128117 NG_010608 19123937 +HGNC:35939 RPL17P16 ribosomal protein L17 pseudogene 16 pseudogene pseudogene Approved 3p21.31 03p21.31 2009-03-06 2009-03-11 729349 NG_009988 19123937 +HGNC:35515 RPL17P17 ribosomal protein L17 pseudogene 17 pseudogene pseudogene Approved 3p14.1 03p14.1 2009-03-06 2012-10-16 100270943 ENSG00000223409 OTTHUMG00000157309 NG_010492 19123937 PGOHUM00000263122 +HGNC:36538 RPL17P18 ribosomal protein L17 pseudogene 18 pseudogene pseudogene Approved 3q29 03q29 2009-03-06 2009-03-11 100129657 NG_010629 19123937 +HGNC:36919 RPL17P19 ribosomal protein L17 pseudogene 19 pseudogene pseudogene Approved 4q13.1 04q13.1 2009-03-06 2013-09-24 100271150 ENSG00000241261 OTTHUMG00000157483 NG_010247 19123937 PGOHUM00000263135 +HGNC:36015 RPL17P20 ribosomal protein L17 pseudogene 20 pseudogene pseudogene Approved 4q12 04q12 2009-03-06 2009-03-11 391655 ENSG00000241250 OTTHUMG00000157478 NG_011190 19123937 +HGNC:36037 RPL17P21 ribosomal protein L17 pseudogene 21 pseudogene pseudogene Approved 5q11.2 05q11.2 2009-03-06 2009-03-11 100271151 NG_002793 19123937 +HGNC:35761 RPL17P22 ribosomal protein L17 pseudogene 22 pseudogene pseudogene Approved 5q11.2 05q11.2 2009-03-06 2009-03-11 727984 ENSG00000243592 OTTHUMG00000157693 NG_010916 19123937 +HGNC:35832 RPL17P23 ribosomal protein L17 pseudogene 23 pseudogene pseudogene Approved 6q22.33 06q22.33 2009-03-06 2009-03-11 100271152 NG_010254 19123937 +HGNC:36506 RPL17P24 ribosomal protein L17 pseudogene 24 pseudogene pseudogene Approved 6q25.2 06q25.2 2009-03-06 2009-03-11 100271153 NG_010258 19123937 +HGNC:36844 RPL17P25 ribosomal protein L17 pseudogene 25 pseudogene pseudogene Approved 6q14.1 06q14.1 2009-03-06 2009-03-11 442232 ENSG00000219547 OTTHUMG00000015091 NG_010621 19123937 +HGNC:35597 RPL17P26 ribosomal protein L17 pseudogene 26 pseudogene pseudogene Approved 6p12.1 06p12.1 2009-03-06 2009-03-11 100129784 ENSG00000216854 OTTHUMG00000014910 NG_011287 19123937 +HGNC:36038 RPL17P27 ribosomal protein L17 pseudogene 27 pseudogene pseudogene Approved 7q34 07q34 2009-03-06 2009-03-11 202789 NG_009649 19123937 +HGNC:36055 RPL17P28 ribosomal protein L17 pseudogene 28 pseudogene pseudogene Approved 7q34 07q34 2009-03-06 2009-03-11 100270940 NG_010479 19123937 +HGNC:36510 RPL17P29 ribosomal protein L17 pseudogene 29 pseudogene pseudogene Approved 8p23.1 08p23.1 2009-03-06 2009-03-11 100271154 NG_010265 19123937 +HGNC:35604 RPL17P30 ribosomal protein L17 pseudogene 30 pseudogene pseudogene Approved 8p12 08p12 2009-03-06 2009-03-11 100271155 NG_010271 19123937 +HGNC:37036 RPL17P31 ribosomal protein L17 pseudogene 31 pseudogene pseudogene Approved 8q13.2 08q13.2 2009-03-06 2009-03-11 100271156 NG_010274 19123937 +HGNC:36492 RPL17P32 ribosomal protein L17 pseudogene 32 pseudogene pseudogene Approved 8q23 08q23 2009-03-06 2009-03-11 100270942 NG_010489 19123937 +HGNC:36654 RPL17P33 ribosomal protein L17 pseudogene 33 pseudogene pseudogene Approved 8p21.1 08p21.1 2009-03-06 2009-03-11 646909 ENSG00000243844 OTTHUMG00000158589 NG_011315 19123937 +HGNC:36756 RPL17P34 ribosomal protein L17 pseudogene 34 pseudogene pseudogene Approved 10q23.33 10q23.33 2009-03-06 2016-08-17 643863 ENSG00000213432 OTTHUMG00000018771 NG_010111 19123937 PGOHUM00000289956 +HGNC:35819 RPL17P35 ribosomal protein L17 pseudogene 35 pseudogene pseudogene Approved 10q21.3 10q21.3 2009-03-06 2013-09-24 100271284 ENSG00000233900 OTTHUMG00000018324 NG_010932 19123937 PGOHUM00000262848 +HGNC:36051 RPL17P36 ribosomal protein L17 pseudogene 36 pseudogene pseudogene Approved 10q26.11 10q26.11 2009-03-06 2016-08-16 729340 ENSG00000236058 OTTHUMG00000019137 NG_011307 19123937 PGOHUM00000290000 +HGNC:36854 RPL17P37 ribosomal protein L17 pseudogene 37 pseudogene pseudogene Approved 12q24.23 12q24.23 2009-03-06 2013-09-24 100271411 ENSG00000241590 OTTHUMG00000157755 NG_010272 19123937 PGOHUM00000262874 +HGNC:36219 RPL17P38 ribosomal protein L17 pseudogene 38 pseudogene pseudogene Approved 12q23.3 12q23.3 2009-03-06 2009-03-11 100271417 NG_010301 19123937 +HGNC:36427 RPL17P39 ribosomal protein L17 pseudogene 39 pseudogene pseudogene Approved 15q23 15q23 2009-03-06 2014-11-19 645296 NG_010917 19123937 RPL17P39 +HGNC:36672 RPL17P40 ribosomal protein L17 pseudogene 40 pseudogene pseudogene Approved 16p13 16p13 2009-03-06 2009-03-11 100271413 ENSG00000241067 OTTHUMG00000158110 NG_010279 19123937 +HGNC:36292 RPL17P41 ribosomal protein L17 pseudogene 41 pseudogene pseudogene Approved 17q24.2 17q24.2 2009-03-06 2009-03-11 100132645 ENSG00000213179 OTTHUMG00000157927 NG_010200 19123937 +HGNC:36749 RPL17P42 ribosomal protein L17 pseudogene 42 pseudogene pseudogene Approved 17q12 17q12 2009-03-06 2015-02-04 100271418 NG_010307 19123937 PGOHUM00000294401 +HGNC:35996 RPL17P43 ribosomal protein L17 pseudogene 43 pseudogene pseudogene Approved 17p11.2 17p11.2 2009-03-06 2009-03-11 729259 ENSG00000228331 OTTHUMG00000059604 NG_010892 19123937 +HGNC:36396 RPL17P44 ribosomal protein L17 pseudogene 44 pseudogene pseudogene Approved 18q21.33 18q21.33 2009-03-06 2009-03-11 100129584 ENSG00000241088 OTTHUMG00000158260 NG_010256 19123937 +HGNC:35618 RPL17P45 ribosomal protein L17 pseudogene 45 pseudogene pseudogene Approved 18q12.3 18q12.3 2009-03-06 2013-09-24 100271414 ENSG00000267664 OTTHUMG00000182379 NG_010285 19123937 PGOHUM00000262996 +HGNC:36202 RPL17P46 ribosomal protein L17 pseudogene 46 pseudogene pseudogene Approved 18q21 18q21 2009-03-06 2009-03-11 100271419 ENSG00000239689 OTTHUMG00000158248 NG_010313 19123937 +HGNC:36089 RPL17P47 ribosomal protein L17 pseudogene 47 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2009-03-11 100271415 NG_010292 19123937 +HGNC:36997 RPL17P48 ribosomal protein L17 pseudogene 48 pseudogene pseudogene Approved 20q13.33 20q13.33 2009-03-06 2009-03-11 100271416 NG_010297 19123937 +HGNC:37009 RPL17P49 ribosomal protein L17 pseudogene 49 pseudogene pseudogene Approved Xp22.2 Xp22.2 2009-03-06 2012-10-16 100271388 ENSG00000231211 OTTHUMG00000021136 NG_010144 19123937 PGOHUM00000263335 +HGNC:45098 RPL17P50 ribosomal protein L17 pseudogene 50 pseudogene pseudogene Approved 10q22.1 10q22.1 2013-02-15 2013-02-15 729046 ENSG00000213700 OTTHUMG00000018448 NG_022148 +HGNC:49100 RPL17P51 ribosomal protein L17 pseudogene 51 pseudogene pseudogene Approved 13q14.11 13q14.11 2013-09-02 2013-09-02 106480245 ENSG00000271429 OTTHUMG00000184721 NG_043848 PGOHUM00000262882 +HGNC:10310 RPL18 ribosomal protein L18 protein-coding gene gene with protein product Approved 19q13 19q13 L18 60S ribosomal protein L18 1994-01-04 2014-11-19 6141 ENSG00000063177 OTTHUMG00000169760 uc002pjq.3 L11566 NM_000979 "CCDS12726|CCDS58669" Q07020 8218404 MGI:98003 RGD:621182 RPL18 604179 +HGNC:10311 RPL18A ribosomal protein L18a protein-coding gene gene with protein product Approved 19p13.11 19p13.11 L18A "60S ribosomal protein L18a|ribosomal protein L18a-like protein" L ribosomal proteins 729 1998-08-18 2014-11-19 6142 ENSG00000105640 OTTHUMG00000183445 uc002nhp.4 AB007175 NM_000980 CCDS12367 Q02543 9582194 MGI:1924058 RGD:1302976 RPL18A 604178 +HGNC:19778 RPL18AP1 ribosomal protein L18a pseudogene 1 pseudogene pseudogene Approved 14q32.12 14q32.12 2009-03-01 2014-11-19 326289 NG_002542 19123937 +HGNC:23774 RPL18AP2 ribosomal protein L18a pseudogene 2 pseudogene pseudogene Approved 21q22.3 21q22.3 2003-12-15 2013-02-15 387494 ENSG00000225043 OTTHUMG00000154992 NG_009884 PGOHUM00000263773 +HGNC:31387 RPL18AP3 ribosomal protein L18a pseudogene 3 pseudogene pseudogene Approved 12q23.3 12q23.3 bcm182 2009-03-01 2014-11-18 390354 ENSG00000213442 OTTHUMG00000157701 AC089983 NG_009537 19123937 +HGNC:36556 RPL18AP4 ribosomal protein L18a pseudogene 4 pseudogene pseudogene Approved 1p35.1 01p35.1 2009-03-06 2009-03-11 127545 NG_010303 19123937 +HGNC:36777 RPL18AP5 ribosomal protein L18a pseudogene 5 pseudogene pseudogene Approved 1p36.11 01p36.11 2009-03-06 2009-03-11 729955 NG_009594 19123937 +HGNC:36266 RPL18AP6 ribosomal protein L18a pseudogene 6 pseudogene pseudogene Approved 2p16.3 02p16.3 2009-03-06 2009-03-11 285053 NG_010647 19123937 +HGNC:35607 RPL18AP7 ribosomal protein L18a pseudogene 7 pseudogene pseudogene Approved 3p22.2 03p22.2 2009-03-06 2013-02-15 100133038 ENSG00000232439 OTTHUMG00000156165 NG_010905 19123937 PGOHUM00000263799 +HGNC:36984 RPL18AP8 ribosomal protein L18a pseudogene 8 pseudogene pseudogene Approved 3q11.2 03q11.2 2009-03-06 2011-04-21 644082 ENSG00000218754 OTTHUMG00000157331 NG_011252 19123937 +HGNC:35885 RPL18AP10 ribosomal protein L18a pseudogene 10 pseudogene pseudogene Approved 7p14.1-p13 07p14.1-p13 2009-03-06 2009-03-11 100271285 NG_010938 19123937 +HGNC:36661 RPL18AP11 ribosomal protein L18a pseudogene 11 pseudogene pseudogene Approved 9p24.1 09p24.1 2009-03-06 2009-03-11 100127999 NG_011326 19123937 +HGNC:36991 RPL18AP12 ribosomal protein L18a pseudogene 12 pseudogene pseudogene Approved 17q21 17q21 2009-03-06 2009-03-11 100271604 NG_011264 19123937 +HGNC:36739 RPL18AP13 ribosomal protein L18a pseudogene 13 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2009-03-11 646189 NG_010245 19123937 +HGNC:36624 RPL18AP14 ribosomal protein L18a pseudogene 14 pseudogene pseudogene Approved Xq22.3 Xq22.3 2009-03-06 2011-01-17 100271420 ENSG00000223733 OTTHUMG00000022128 NG_010318 19123937 +HGNC:36010 RPL18AP15 ribosomal protein L18a pseudogene 15 pseudogene pseudogene Approved Xq23 Xq23 2009-03-06 2011-09-20 392522 ENSG00000236189 OTTHUMG00000022208 NG_010399 19123937 PGOHUM00000241498 +HGNC:36288 RPL18AP16 ribosomal protein L18a pseudogene 16 pseudogene pseudogene Approved Xq28 Xq28 2009-03-06 2011-09-20 347544 ENSG00000237793 OTTHUMG00000024214 NG_006952 19123937 PGOHUM00000242092 +HGNC:39850 RPL18AP17 ribosomal protein L18a pseudogene 17 pseudogene pseudogene Approved 13q21.33 13q21.33 2011-04-01 2011-04-01 100873859 ENSG00000227952 OTTHUMG00000017066 NG_032359 PGOHUM00000248436 +HGNC:19673 RPL18P1 ribosomal protein L18 pseudogene 1 pseudogene pseudogene Approved 14q21.3 14q21.3 2009-03-01 2014-11-18 326291 NG_002543 19123937 +HGNC:35759 RPL18P2 ribosomal protein L18 pseudogene 2 pseudogene pseudogene Approved 1q25.3 01q25.3 2009-03-06 2009-03-11 100129421 NG_010738 19123937 +HGNC:35783 RPL18P3 ribosomal protein L18 pseudogene 3 pseudogene pseudogene Approved 5q23.1 05q23.1 2009-03-06 2009-03-11 100129374 NG_010491 19123937 +HGNC:36144 RPL18P4 ribosomal protein L18 pseudogene 4 pseudogene pseudogene Approved 7q31.31 07q31.31 2009-03-06 2009-03-11 392979 NG_009449 19123937 +HGNC:36425 RPL18P5 ribosomal protein L18 pseudogene 5 pseudogene pseudogene Approved 7q33 07q33 2009-03-06 2009-03-11 100270944 NG_010496 19123937 +HGNC:35528 RPL18P6 ribosomal protein L18 pseudogene 6 pseudogene pseudogene Approved 8q23.2 08q23.2 2009-03-06 2009-03-11 100131333 NG_009990 19123937 +HGNC:35936 RPL18P7 ribosomal protein L18 pseudogene 7 pseudogene pseudogene Approved 8q23.3 08q23.3 2009-03-06 2009-03-11 100270945 NG_010500 19123937 +HGNC:36878 RPL18P8 ribosomal protein L18 pseudogene 8 pseudogene pseudogene Approved 11p12 11p12 2009-03-06 2009-03-11 100129670 NG_010700 19123937 +HGNC:36766 RPL18P9 ribosomal protein L18 pseudogene 9 pseudogene pseudogene Approved 12p13.32 12p13.32 2009-03-06 2009-03-11 100129645 NG_010566 19123937 +HGNC:35957 RPL18P10 ribosomal protein L18 pseudogene 10 pseudogene pseudogene Approved 13q14.2 13q14.2 2009-03-06 2011-01-14 100271286 ENSG00000214359 OTTHUMG00000016928 NG_010943 19123937 PGOHUM00000248592 +HGNC:35742 RPL18P11 ribosomal protein L18 pseudogene 11 pseudogene pseudogene Approved 15q25.1 15q25.1 2009-03-06 2009-03-11 390612 ENSG00000213307 OTTHUMG00000158032 NG_011096 19123937 +HGNC:36115 RPL18P12 ribosomal protein L18 pseudogene 12 pseudogene pseudogene Approved 16p13.3 16p13.3 2009-03-06 2009-03-11 390671 NG_010057 19123937 +HGNC:35599 RPL18P13 ribosomal protein L18 pseudogene 13 pseudogene pseudogene Approved 16q23.1 16q23.1 2009-03-06 2009-03-11 441775 ENSG00000244485 OTTHUMG00000158262 NG_010911 19123937 +HGNC:10312 RPL19 ribosomal protein L19 protein-coding gene gene with protein product Approved 17q12 17q12 "FLJ27452|MGC71997|DKFZp779D216|L19" "60S ribosomal protein L19|ribosomal protein L19, cytosolic, N-terminus truncated" L ribosomal proteins 729 1991-11-29 2015-08-25 6143 ENSG00000108298 OTTHUMG00000178979 uc002hrq.1 NM_000981 "CCDS42312|CCDS82113" P84098 1577483 MGI:98020 RGD:621183 RPL19 180466 +HGNC:16595 RPL19P1 ribosomal protein L19 pseudogene 1 pseudogene pseudogene Approved 20p13 20p13 dJ860F19.2 2009-03-01 2016-07-25 140759 ENSG00000226217 OTTHUMG00000031708 NG_001002 19123937 PGOHUM00000297040 +HGNC:29946 RPL19P2 ribosomal protein L19 pseudogene 2 pseudogene pseudogene Approved 3p14.3 03p14.3 2009-03-01 2014-11-19 654382 AC097358 NG_009531 19123937 +HGNC:36671 RPL19P3 ribosomal protein L19 pseudogene 3 pseudogene pseudogene Approved 1p31.3 01p31.3 2009-03-06 2009-03-11 100131759 NG_010913 19123937 +HGNC:36539 RPL19P4 ribosomal protein L19 pseudogene 4 pseudogene pseudogene Approved 2q21.1 02q21.1 2009-03-06 2009-03-11 646710 NG_010288 19123937 +HGNC:36325 RPL19P5 ribosomal protein L19 pseudogene 5 pseudogene pseudogene Approved 2q35 02q35 2009-03-06 2009-03-11 646532 NG_010688 19123937 +HGNC:36795 RPL19P6 ribosomal protein L19 pseudogene 6 pseudogene pseudogene Approved 3q23 03q23 2009-03-06 2009-03-11 100270946 NG_010507 19123937 +HGNC:36088 RPL19P7 ribosomal protein L19 pseudogene 7 pseudogene pseudogene Approved 3q12 03q12 2009-03-06 2009-03-11 100131527 NG_011033 19123937 +HGNC:36696 RPL19P8 ribosomal protein L19 pseudogene 8 pseudogene pseudogene Approved 4q34.3 04q34.3 2009-03-06 2009-03-11 391719 NG_010214 19123937 +HGNC:35918 RPL19P9 ribosomal protein L19 pseudogene 9 pseudogene pseudogene Approved 5q35.3 05q35.3 2009-03-06 2009-03-11 653314 NG_009970 19123937 +HGNC:36534 RPL19P10 ribosomal protein L19 pseudogene 10 pseudogene pseudogene Approved 5q34 05q34 2009-03-06 2009-03-11 100270948 NG_010516 19123937 +HGNC:36953 RPL19P11 ribosomal protein L19 pseudogene 11 pseudogene pseudogene Approved 5p13.3 05p13.3 2009-03-06 2013-09-24 100270950 ENSG00000241668 OTTHUMG00000157639 NG_010524 19123937 PGOHUM00000235543 +HGNC:36047 RPL19P12 ribosomal protein L19 pseudogene 12 pseudogene pseudogene Approved 7q22.1 07q22.1 2009-03-06 2010-06-16 100129424 NR_026660 19123937 +HGNC:36879 RPL19P13 ribosomal protein L19 pseudogene 13 pseudogene pseudogene Approved 8p23.1 08p23.1 2009-03-06 2011-12-07 392193 ENSG00000239315 OTTHUMG00000158120 NG_009963 19123937 PGOHUM00000250020 +HGNC:35684 RPL19P14 ribosomal protein L19 pseudogene 14 pseudogene pseudogene Approved 8q22.2 08q22.2 2009-03-06 2009-03-11 100270951 ENSG00000240870 OTTHUMG00000158670 NG_010531 19123937 +HGNC:35920 RPL19P15 ribosomal protein L19 pseudogene 15 pseudogene pseudogene Approved 9q34.12 09q34.12 2009-03-06 2009-03-11 642306 NG_009968 19123937 +HGNC:36596 RPL19P16 ribosomal protein L19 pseudogene 16 pseudogene pseudogene Approved 10q26.12 10q26.12 2009-03-06 2016-08-16 646255 ENSG00000236762 OTTHUMG00000019172 NG_010575 19123937 PGOHUM00000290008 +HGNC:36829 RPL19P17 ribosomal protein L19 pseudogene 17 pseudogene pseudogene Approved 12p13 12p13 2009-03-06 2009-03-11 100271287 NG_010951 19123937 +HGNC:36121 RPL19P18 ribosomal protein L19 pseudogene 18 pseudogene pseudogene Approved 17p12 17p12 2009-03-06 2009-03-11 100271288 ENSG00000241654 OTTHUMG00000157702 NG_010954 19123937 +HGNC:36194 RPL19P19 ribosomal protein L19 pseudogene 19 pseudogene pseudogene Approved 19q13.43 19q13.43 2009-03-06 2009-03-11 646820 NG_010859 19123937 +HGNC:35713 RPL19P20 ribosomal protein L19 pseudogene 20 pseudogene pseudogene Approved Xp11.3 Xp11.3 2009-03-06 2011-09-20 392451 ENSG00000229168 OTTHUMG00000021398 NG_009975 19123937 PGOHUM00000241730 +HGNC:35868 RPL19P21 ribosomal protein L19 pseudogene 21 pseudogene pseudogene Approved Xq28 Xq28 2009-03-06 2011-09-20 392557 ENSG00000230508 OTTHUMG00000024163 NG_010567 19123937 PGOHUM00000242079 +HGNC:10313 RPL21 ribosomal protein L21 protein-coding gene gene with protein product Approved 13q12.2 13q12.2 "L21|FLJ27458|MGC71252|MGC104274|MGC104275|DKFZp686C06101" 60S ribosomal protein L21 L ribosomal proteins 729 1986-01-01 2014-11-18 6144 ENSG00000122026 OTTHUMG00000016630 uc001ura.4 AB007176 NM_000982 CCDS9320 P46778 "3459254|7772601" MGI:1278340 RGD:68390 RPL21 603636 285488 +HGNC:10314 RPL21P1 ribosomal protein L21 pseudogene 1 pseudogene pseudogene Approved 12q24.31 12q24.31 RPL21P ribosomal protein L21 pseudogene 1994-12-13 2001-12-14 2001-12-10 2014-11-19 6145 ENSG00000214760 OTTHUMG00000168926 X63773 NG_000868 7940018 603416 PGOHUM00000239949 +HGNC:16539 RPL21P2 ribosomal protein L21 pseudogene 2 pseudogene pseudogene Approved 20p13 20p13 bA352D3.1 2009-03-01 2016-07-25 140715 ENSG00000215063 OTTHUMG00000031773 NG_000986 19123937 PGOHUM00000296886 +HGNC:16533 RPL21P3 ribosomal protein L21 pseudogene 3 pseudogene pseudogene Approved 20p11.23 20p11.23 bA189K21.4 2001-09-17 2016-07-25 128760 ENSG00000225419 OTTHUMG00000031969 NG_000976 PGOHUM00000297061 +HGNC:17959 RPL21P4 ribosomal protein L21 pseudogene 4 pseudogene pseudogene Approved 17q21 17q21 2009-03-01 2014-11-19 140660 ENSG00000240828 OTTHUMG00000157434 NG_005905 "8938427|19123937" +HGNC:23541 RPL21P5 ribosomal protein L21 pseudogene 5 pseudogene pseudogene Approved 14q12 14q12 2005-11-24 2013-02-18 641613 ENSG00000258640 OTTHUMG00000170671 AL121808 NG_009393 PGOHUM00000263581 +HGNC:23542 RPL21P6 ribosomal protein L21 pseudogene 6 pseudogene pseudogene Approved 14q22.3 14q22.3 2009-03-01 2014-11-19 652975 ENSG00000239199 OTTHUMG00000157908 AL356801 NG_009398 19123937 +HGNC:19772 RPL21P7 ribosomal protein L21 pseudogene 7 pseudogene pseudogene Approved 14q23.3 14q23.3 2003-01-13 2013-09-24 145370 ENSG00000258613 OTTHUMG00000171169 NG_002487 PGOHUM00000258744 +HGNC:19779 RPL21P8 ribosomal protein L21 pseudogene 8 pseudogene pseudogene Approved 14q23.3 14q23.3 2009-03-01 2014-11-19 319145 ENSG00000180662 OTTHUMG00000157964 NG_002521 19123937 PGOHUM00000258745 +HGNC:19780 RPL21P9 ribosomal protein L21 pseudogene 9 pseudogene pseudogene Approved 14q24.1 14q24.1 2003-01-13 2013-09-24 283562 ENSG00000258618 OTTHUMG00000171273 NG_002491 +HGNC:19795 RPL21P10 ribosomal protein L21 pseudogene 10 pseudogene pseudogene Approved 14q24.3 14q24.3 2009-03-01 2014-11-19 319143 ENSG00000239272 OTTHUMG00000158069 NG_002519 19123937 PGOHUM00000247867 +HGNC:19800 RPL21P11 ribosomal protein L21 pseudogene 11 pseudogene pseudogene Approved 14q32.11 14q32.11 2009-03-01 2014-11-18 157206 ENSG00000242571 OTTHUMG00000158081 NG_002488 19123937 +HGNC:19810 RPL21P12 ribosomal protein L21 pseudogene 12 pseudogene pseudogene Approved 14q32.32 14q32.32 2003-01-13 2013-09-24 122409 ENSG00000259535 OTTHUMG00000171892 NG_002482 PGOHUM00000258800 +HGNC:19812 RPL21P13 ribosomal protein L21 pseudogene 13 pseudogene pseudogene Approved 14q32.32 14q32.32 2009-03-01 2014-11-19 319144 ENSG00000242837 OTTHUMG00000158137 NG_002520 19123937 PGOHUM00000248276 +HGNC:31029 RPL21P14 ribosomal protein L21 pseudogene 14 pseudogene pseudogene Approved 15q22.1 15q22.1 HsT16795 2009-03-01 2014-11-19 729208 AC090515 NG_009507 19123937 +HGNC:31030 RPL21P15 ribosomal protein L21 pseudogene 15 pseudogene pseudogene Approved 15q22.31 15q22.31 HsT18206 2009-03-01 2014-11-19 654385 AC090543 NG_009532 19123937 +HGNC:31396 RPL21P16 ribosomal protein L21 pseudogene 16 pseudogene pseudogene Approved 10q26.12 10q26.12 Em:AC073587.1 2009-03-01 2016-08-17 729402 ENSG00000220842 OTTHUMG00000019165 NG_009450 19123937 +HGNC:19416 RPL21P17 ribosomal protein L21 pseudogene 17 pseudogene pseudogene Approved 3p26.3 03p26.3 2009-03-01 2014-11-19 727810 ENSG00000214073 OTTHUMG00000154858 AC018814 NG_009372 19123937 PGOHUM00000237923 +HGNC:28362 RPL21P18 ribosomal protein L21 pseudogene 18 pseudogene pseudogene Approved 12q14.3 12q14.3 ENSG00000184796 2009-03-01 2014-11-19 729484 ENSG00000213343 OTTHUMG00000157609 NG_009709 19123937 PGOHUM00000239835 +HGNC:35748 RPL21P19 ribosomal protein L21 pseudogene 19 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 641293 NG_005331 19123937 +HGNC:36582 RPL21P20 ribosomal protein L21 pseudogene 20 pseudogene pseudogene Approved 1p34.2 01p34.2 2009-03-06 2009-03-11 388621 NG_010042 19123937 RPL21P20 +HGNC:35728 RPL21P21 ribosomal protein L21 pseudogene 21 pseudogene pseudogene Approved 1p36.3 01p36.3 2009-03-06 2009-03-11 100270877 NG_010149 19123937 +HGNC:36550 RPL21P22 ribosomal protein L21 pseudogene 22 pseudogene pseudogene Approved 1p35.2 01p35.2 2009-03-06 2009-03-11 100270878 NG_010153 19123937 +HGNC:36205 RPL21P23 ribosomal protein L21 pseudogene 23 pseudogene pseudogene Approved 1p32.2 01p32.2 2009-03-06 2013-09-19 100270879 ENSG00000236776 OTTHUMG00000039625 NG_010163 19123937 PGOHUM00000244733 +HGNC:35702 RPL21P24 ribosomal protein L21 pseudogene 24 pseudogene pseudogene Approved 1p33 01p33 2009-03-06 2014-11-19 100270880 ENSG00000229554 OTTHUMG00000007964 NG_010168 19123937 +HGNC:36785 RPL21P25 ribosomal protein L21 pseudogene 25 pseudogene pseudogene Approved 1p33 01p33 2009-03-06 2009-03-11 100270881 NG_010175 19123937 +HGNC:35910 RPL21P26 ribosomal protein L21 pseudogene 26 pseudogene pseudogene Approved 1p22-p21 01p22-p21 2009-03-06 2009-03-11 100270882 NG_010180 19123937 +HGNC:36371 RPL21P27 ribosomal protein L21 pseudogene 27 pseudogene pseudogene Approved 1q23 01q23 2009-03-06 2009-03-11 100270952 NG_010535 19123937 +HGNC:36258 RPL21P28 ribosomal protein L21 pseudogene 28 pseudogene pseudogene Approved 1q32.3 01q32.3 2009-03-06 2013-01-23 100131205 ENSG00000220749 OTTHUMG00000037130 NR_026911 19123937 +HGNC:35793 RPL21P29 ribosomal protein L21 pseudogene 29 pseudogene pseudogene Approved 1p36.12 01p36.12 2009-03-06 2009-03-11 440575 NG_011325 19123937 +HGNC:36091 RPL21P30 ribosomal protein L21 pseudogene 30 pseudogene pseudogene Approved 2p16.2 02p16.2 2009-03-06 2009-03-11 100271157 NG_010278 19123937 +HGNC:36306 RPL21P31 ribosomal protein L21 pseudogene 31 pseudogene pseudogene Approved 2q32 02q32 2009-03-06 2009-03-11 100271160 NG_010296 19123937 +HGNC:36978 RPL21P32 ribosomal protein L21 pseudogene 32 pseudogene pseudogene Approved 2q32.1 02q32.1 2009-03-06 2013-09-24 100271161 ENSG00000224019 OTTHUMG00000154236 NG_010300 19123937 PGOHUM00000240452 +HGNC:36686 RPL21P33 ribosomal protein L21 pseudogene 33 pseudogene pseudogene Approved 2p16.1 02p16.1 2009-03-06 2014-01-17 100270953 ENSG00000237024 OTTHUMG00000152167 NG_010539 19123937 PGOHUM00000240655 +HGNC:36529 RPL21P34 ribosomal protein L21 pseudogene 34 pseudogene pseudogene Approved 2q21 02q21 2009-03-06 2009-03-11 100270954 NG_010548 19123937 +HGNC:36900 RPL21P35 ribosomal protein L21 pseudogene 35 pseudogene pseudogene Approved 2q37.1 02q37.1 2009-03-06 2009-03-11 100270955 NG_010553 19123937 +HGNC:36128 RPL21P36 ribosomal protein L21 pseudogene 36 pseudogene pseudogene Approved 2p21 02p21 2009-03-06 2009-03-11 100270956 NG_010557 19123937 +HGNC:35704 RPL21P37 ribosomal protein L21 pseudogene 37 pseudogene pseudogene Approved 2p15 02p15 2009-03-06 2009-03-11 100129141 NG_009700 19123937 +HGNC:36349 RPL21P38 ribosomal protein L21 pseudogene 38 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2012-11-23 100131481 ENSG00000233934 OTTHUMG00000154060 NG_010810 19123937 PGOHUM00000241017 +HGNC:36127 RPL21P39 ribosomal protein L21 pseudogene 39 pseudogene pseudogene Approved 3q24 03q24 2009-03-06 2012-11-15 389156 ENSG00000239797 OTTHUMG00000157392 NG_009665 19123937 PGOHUM00000237803 +HGNC:36189 RPL21P40 ribosomal protein L21 pseudogene 40 pseudogene pseudogene Approved 3p22.3 03p22.3 2009-03-06 2011-07-27 100271158 ENSG00000235670 OTTHUMG00000155839 NG_010284 19123937 PGOHUM00000237980 +HGNC:36765 RPL21P41 ribosomal protein L21 pseudogene 41 pseudogene pseudogene Approved 3p14.1 03p14.1 2009-03-06 2012-11-15 100271159 ENSG00000214560 OTTHUMG00000157313 NG_010291 19123937 PGOHUM00000238052 +HGNC:37017 RPL21P42 ribosomal protein L21 pseudogene 42 pseudogene pseudogene Approved 3q25.2 03q25.2 2009-03-06 2013-02-15 100271162 ENSG00000240068 OTTHUMG00000157416 NG_010306 19123937 PGOHUM00000263810 +HGNC:36008 RPL21P43 ribosomal protein L21 pseudogene 43 pseudogene pseudogene Approved 3q26.2 03q26.2 2009-03-06 2012-11-15 100271163 ENSG00000231688 OTTHUMG00000157291 NG_010312 19123937 PGOHUM00000237855 +HGNC:33820 RPL21P44 ribosomal protein L21 pseudogene 44 pseudogene pseudogene Approved 4q12 04q12 2009-03-12 2014-11-19 402176 ENSG00000229585 OTTHUMG00000157449 NR_027153 19123937 RPL21P44 +HGNC:35983 RPL21P45 ribosomal protein L21 pseudogene 45 pseudogene pseudogene Approved 4p14 04p14 2009-03-06 2009-03-11 727821 NG_009653 19123937 +HGNC:35687 RPL21P46 ribosomal protein L21 pseudogene 46 pseudogene pseudogene Approved 4p15.31 04p15.31 2009-03-06 2009-03-11 645174 NG_009673 19123937 +HGNC:36711 RPL21P47 ribosomal protein L21 pseudogene 47 pseudogene pseudogene Approved 4q13.1 04q13.1 2009-03-06 2013-09-23 100271164 ENSG00000241344 OTTHUMG00000157487 NG_010317 19123937 PGOHUM00000263819 +HGNC:35891 RPL21P48 ribosomal protein L21 pseudogene 48 pseudogene pseudogene Approved 4q23 04q23 2009-03-06 2009-03-11 100271165 NG_010321 19123937 +HGNC:35769 RPL21P49 ribosomal protein L21 pseudogene 49 pseudogene pseudogene Approved 4q24 04q24 2009-03-06 2009-03-11 100271166 NG_011346 19123937 +HGNC:36433 RPL21P50 ribosomal protein L21 pseudogene 50 pseudogene pseudogene Approved 4q28.1 04q28.1 2009-03-06 2013-09-23 100271167 ENSG00000228489 OTTHUMG00000155266 NG_010331 19123937 PGOHUM00000245688 +HGNC:36081 RPL21P51 ribosomal protein L21 pseudogene 51 pseudogene pseudogene Approved 4q32.3 04q32.3 2009-03-06 2009-03-11 100271169 NG_010345 19123937 +HGNC:36621 RPL21P52 ribosomal protein L21 pseudogene 52 pseudogene pseudogene Approved 4p12 04p12 2009-03-06 2009-03-11 100128351 NG_009687 19123937 +HGNC:36574 RPL21P53 ribosomal protein L21 pseudogene 53 pseudogene pseudogene Approved 4q28.1 04q28.1 2009-03-06 2009-03-11 653156 NG_010520 19123937 +HGNC:35552 RPL21P54 ribosomal protein L21 pseudogene 54 pseudogene pseudogene Approved 5p13.2 05p13.2 2009-03-06 2009-03-11 100271168 ENSG00000241829 OTTHUMG00000162023 NG_010337 19123937 +HGNC:36434 RPL21P55 ribosomal protein L21 pseudogene 55 pseudogene pseudogene Approved 5q12.3 05q12.3 2009-03-06 2009-03-11 100271170 NG_010351 19123937 +HGNC:35525 RPL21P56 ribosomal protein L21 pseudogene 56 pseudogene pseudogene Approved 5p13.3 05p13.3 2009-03-06 2009-03-11 100271171 NG_010357 19123937 +HGNC:36644 RPL21P57 ribosomal protein L21 pseudogene 57 pseudogene pseudogene Approved 5q33.2 05q33.2 2009-03-06 2009-03-11 100271172 NG_010361 19123937 +HGNC:35755 RPL21P58 ribosomal protein L21 pseudogene 58 pseudogene pseudogene Approved 5q23.1 05q23.1 2009-03-06 2009-03-11 100271173 NG_010365 19123937 +HGNC:36922 RPL21P59 ribosomal protein L21 pseudogene 59 pseudogene pseudogene Approved 5q34 05q34 2009-03-06 2009-03-11 100271174 NG_010369 19123937 +HGNC:36044 RPL21P60 ribosomal protein L21 pseudogene 60 pseudogene pseudogene Approved 5q35.3 05q35.3 2009-03-06 2009-03-11 100271175 NG_010381 19123937 +HGNC:36712 RPL21P61 ribosomal protein L21 pseudogene 61 pseudogene pseudogene Approved 6p22.3 06p22.3 2009-03-06 2009-03-11 645157 NG_009666 19123937 +HGNC:36843 RPL21P62 ribosomal protein L21 pseudogene 62 pseudogene pseudogene Approved 6p24.3 06p24.3 2009-03-06 2009-03-11 442160 NG_009672 19123937 +HGNC:35526 RPL21P63 ribosomal protein L21 pseudogene 63 pseudogene pseudogene Approved 6p24.2 06p24.2 2009-03-06 2009-03-11 100271176 NG_010385 19123937 +HGNC:36259 RPL21P64 ribosomal protein L21 pseudogene 64 pseudogene pseudogene Approved 6q22.33 06q22.33 2009-03-06 2009-03-11 100271177 NG_010391 19123937 +HGNC:36017 RPL21P65 ribosomal protein L21 pseudogene 65 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2012-01-26 100271178 ENSG00000216977 OTTHUMG00000015303 NG_010397 19123937 PGOHUM00000243728 +HGNC:36476 RPL21P66 ribosomal protein L21 pseudogene 66 pseudogene pseudogene Approved 6q23.2 06q23.2 2009-03-06 2011-05-19 100271179 ENSG00000225343 OTTHUMG00000015580 NG_010401 19123937 PGOHUM00000243372 +HGNC:36139 RPL21P67 ribosomal protein L21 pseudogene 67 pseudogene pseudogene Approved 6q23.2 06q23.2 2009-03-06 2013-09-23 100271180 ENSG00000219776 OTTHUMG00000015564 NG_010407 19123937 PGOHUM00000243774 +HGNC:35720 RPL21P68 ribosomal protein L21 pseudogene 68 pseudogene pseudogene Approved 6p22.2 06p22.2 2009-03-06 2009-03-11 645452 NG_010409 19123937 +HGNC:36753 RPL21P69 ribosomal protein L21 pseudogene 69 pseudogene pseudogene Approved 6q25.3 06q25.3 2009-03-06 2009-03-11 642738 NG_009725 19123937 +HGNC:37024 RPL21P70 ribosomal protein L21 pseudogene 70 pseudogene pseudogene Approved 2p23.1 02p23.1 2009-03-06 2009-03-11 646489 NG_011366 19123937 +HGNC:36049 RPL21P71 ribosomal protein L21 pseudogene 71 pseudogene pseudogene Approved 3q24 03q24 2009-03-06 2012-11-15 729962 ENSG00000239412 OTTHUMG00000157393 NG_011368 19123937 PGOHUM00000259876 +HGNC:37043 RPL21P72 ribosomal protein L21 pseudogene 72 pseudogene pseudogene Approved 7p22.2 07p22.2 2009-03-06 2009-03-11 100271181 NG_010413 19123937 +HGNC:36794 RPL21P73 ribosomal protein L21 pseudogene 73 pseudogene pseudogene Approved 7q34 07q34 2009-03-06 2009-03-11 100271182 NG_010418 19123937 +HGNC:35854 RPL21P74 ribosomal protein L21 pseudogene 74 pseudogene pseudogene Approved 7q21.3 07q21.3 2009-03-06 2009-03-11 100271184 NG_010429 19123937 +HGNC:36460 RPL21P75 ribosomal protein L21 pseudogene 75 pseudogene pseudogene Approved 7p21.1 07p21.1 2009-03-06 2013-01-23 728501 ENSG00000213860 OTTHUMG00000152536 NG_006559 19123937 +HGNC:37042 RPL21P76 ribosomal protein L21 pseudogene 76 pseudogene pseudogene Approved 7q36.3 07q36.3 2009-03-06 2009-03-11 645373 NG_005567 19123937 +HGNC:36186 RPL21P77 ribosomal protein L21 pseudogene 77 pseudogene pseudogene Approved 8p21.3 08p21.3 2009-03-06 2009-03-11 100271183 NG_010422 19123937 +HGNC:35917 RPL21P78 ribosomal protein L21 pseudogene 78 pseudogene pseudogene Approved 8q24 08q24 2009-03-06 2009-03-11 100271185 NG_010433 19123937 +HGNC:36931 RPL21P79 ribosomal protein L21 pseudogene 79 pseudogene pseudogene Approved 8q11.23 08q11.23 2009-03-06 2009-03-11 100271188 NG_010445 19123937 +HGNC:35697 RPL21P80 ribosomal protein L21 pseudogene 80 pseudogene pseudogene Approved 8p12 08p12 2009-03-06 2009-03-11 100133273 NG_009717 19123937 +HGNC:35530 RPL21P81 ribosomal protein L21 pseudogene 81 pseudogene pseudogene Approved 9q34 09q34 2009-03-06 2009-03-11 100271389 NG_000837 19123937 +HGNC:36307 RPL21P82 ribosomal protein L21 pseudogene 82 pseudogene pseudogene Approved 9q22.31 09q22.31 2009-03-06 2009-03-11 650059 NG_009681 19123937 +HGNC:35864 RPL21P83 ribosomal protein L21 pseudogene 83 pseudogene pseudogene Approved 9p13.2 09p13.2 2009-03-06 2009-03-11 100271186 NG_010437 19123937 +HGNC:36612 RPL21P84 ribosomal protein L21 pseudogene 84 pseudogene pseudogene Approved 9q21.2 09q21.2 2009-03-06 2009-03-11 100271187 NG_010439 19123937 +HGNC:35694 RPL21P85 ribosomal protein L21 pseudogene 85 pseudogene pseudogene Approved 9q22.1-q22.3 09q22.1-q22.3 2009-03-06 2009-03-11 100271189 NG_010449 19123937 +HGNC:37032 RPL21P86 ribosomal protein L21 pseudogene 86 pseudogene pseudogene Approved 9q22.31 09q22.31 2009-03-06 2009-03-11 100271190 NG_010452 19123937 +HGNC:36411 RPL21P87 ribosomal protein L21 pseudogene 87 pseudogene pseudogene Approved 9q31.3 09q31.3 2009-03-06 2009-03-11 100131672 NG_010463 19123937 +HGNC:35714 RPL21P88 ribosomal protein L21 pseudogene 88 pseudogene pseudogene Approved 10q11.21 10q11.21 2009-03-06 2016-08-16 100271421 ENSG00000238263 OTTHUMG00000018042 NG_010322 19123937 PGOHUM00000290130 +HGNC:36474 RPL21P89 ribosomal protein L21 pseudogene 89 pseudogene pseudogene Approved 10q11.23 10q11.23 2009-03-06 2016-08-17 100271422 ENSG00000229870 OTTHUMG00000157152 NG_010325 19123937 PGOHUM00000290155 +HGNC:35548 RPL21P90 ribosomal protein L21 pseudogene 90 pseudogene pseudogene Approved 10q24.1 10q24.1 2009-03-06 2016-08-16 100271423 ENSG00000227805 OTTHUMG00000018821 NG_010332 19123937 +HGNC:36450 RPL21P91 ribosomal protein L21 pseudogene 91 pseudogene pseudogene Approved 10q25.1 10q25.1 2009-03-06 2016-08-17 100271424 ENSG00000224907 OTTHUMG00000019027 NG_010338 19123937 PGOHUM00000290279 +HGNC:35606 RPL21P92 ribosomal protein L21 pseudogene 92 pseudogene pseudogene Approved 10q21.3 10q21.3 2009-03-06 2016-08-17 100130400 ENSG00000225922 OTTHUMG00000018338 NG_009689 19123937 PGOHUM00000290187 +HGNC:35646 RPL21P93 ribosomal protein L21 pseudogene 93 pseudogene pseudogene Approved 10p12.1 10p12.1 2009-03-06 2016-08-17 653665 ENSG00000229605 OTTHUMG00000017879 NG_010505 19123937 +HGNC:35568 RPL21P94 ribosomal protein L21 pseudogene 94 pseudogene pseudogene Approved 11p15 11p15 2009-03-06 2009-03-11 100271425 NG_010346 19123937 +HGNC:36097 RPL21P95 ribosomal protein L21 pseudogene 95 pseudogene pseudogene Approved 11q14.1 11q14.1 2009-03-06 2009-03-11 100271427 NG_010358 19123937 +HGNC:36790 RPL21P96 ribosomal protein L21 pseudogene 96 pseudogene pseudogene Approved 11q22.3 11q22.3 2009-03-06 2009-03-11 100271428 NG_010362 19123937 +HGNC:36223 RPL21P97 ribosomal protein L21 pseudogene 97 pseudogene pseudogene Approved 11p15.4 11p15.4 2009-03-06 2009-03-11 387753 NG_010883 19123937 +HGNC:36397 RPL21P98 ribosomal protein L21 pseudogene 98 pseudogene pseudogene Approved 12q21.2 12q21.2 2009-03-06 2009-03-11 653079 NG_009659 19123937 +HGNC:36628 RPL21P99 ribosomal protein L21 pseudogene 99 pseudogene pseudogene Approved 12p11.22 12p11.22 2009-03-06 2009-03-11 100271429 NG_010366 19123937 +HGNC:36048 RPL21P100 ribosomal protein L21 pseudogene 100 pseudogene pseudogene Approved 12p13.2 12p13.2 2009-03-06 2009-03-11 100271430 NG_010370 19123937 +HGNC:35733 RPL21P101 ribosomal protein L21 pseudogene 101 pseudogene pseudogene Approved 12q12 12q12 2009-03-06 2009-03-11 100271431 NG_010382 19123937 +HGNC:36295 RPL21P102 ribosomal protein L21 pseudogene 102 pseudogene pseudogene Approved 12p12.1 12p12.1 2009-03-06 2009-03-11 100271432 NG_010386 19123937 +HGNC:36732 RPL21P103 ribosomal protein L21 pseudogene 103 pseudogene pseudogene Approved 12q14.1 12q14.1 2009-03-06 2013-09-23 100271433 ENSG00000241423 OTTHUMG00000157583 NG_010392 19123937 PGOHUM00000239814 +HGNC:36918 RPL21P104 ribosomal protein L21 pseudogene 104 pseudogene pseudogene Approved 12q14.1 12q14.1 2009-03-06 2013-02-15 100271435 ENSG00000242922 OTTHUMG00000157593 NG_010402 19123937 PGOHUM00000263569 +HGNC:36304 RPL21P105 ribosomal protein L21 pseudogene 105 pseudogene pseudogene Approved 12q24.22 12q24.22 2009-03-06 2009-03-11 728693 NG_009699 19123937 +HGNC:36188 RPL21P106 ribosomal protein L21 pseudogene 106 pseudogene pseudogene Approved 12q21.33 12q21.33 2009-03-06 2009-03-11 643264 ENSG00000239201 OTTHUMG00000157668 NG_009728 19123937 +HGNC:36313 RPL21P107 ribosomal protein L21 pseudogene 107 pseudogene pseudogene Approved 13q34 13q34 2009-03-06 2012-11-15 644627 ENSG00000225239 OTTHUMG00000017348 NG_009801 19123937 PGOHUM00000258717 +HGNC:35496 RPL21P108 ribosomal protein L21 pseudogene 108 pseudogene pseudogene Approved 13q22.1 13q22.1 2009-03-06 2010-11-29 100271434 ENSG00000232701 OTTHUMG00000017080 NG_010398 19123937 PGOHUM00000248438 +HGNC:36388 RPL21P109 ribosomal protein L21 pseudogene 109 pseudogene pseudogene Approved 13q21.33 13q21.33 2009-03-06 2011-01-14 100271437 ENSG00000237816 OTTHUMG00000017062 NG_010414 19123937 PGOHUM00000248628 +HGNC:35627 RPL21P110 ribosomal protein L21 pseudogene 110 pseudogene pseudogene Approved 13q21.33 13q21.33 2009-03-06 2016-10-05 100271438 ENSG00000226617 OTTHUMG00000017067 NG_010419 19123937 PGOHUM00000248630 +HGNC:36564 RPL21P111 ribosomal protein L21 pseudogene 111 pseudogene pseudogene Approved 13q31.1 13q31.1 2009-03-06 2013-09-23 100271439 ENSG00000237109 OTTHUMG00000017125 NG_010423 19123937 PGOHUM00000248641 +HGNC:36526 RPL21P112 ribosomal protein L21 pseudogene 112 pseudogene pseudogene Approved 13q32.1 13q32.1 2009-03-06 2011-01-14 100270753 ENSG00000237924 OTTHUMG00000017210 NG_009638 19123937 PGOHUM00000248465 +HGNC:36563 RPL21P113 ribosomal protein L21 pseudogene 113 pseudogene pseudogene Approved 15q21 15q21 2009-03-06 2009-03-11 100271440 NG_010430 19123937 +HGNC:36776 RPL21P114 ribosomal protein L21 pseudogene 114 pseudogene pseudogene Approved 15q22.2 15q22.2 2009-03-06 2009-03-11 100271441 NG_010434 19123937 +HGNC:35878 RPL21P115 ribosomal protein L21 pseudogene 115 pseudogene pseudogene Approved 15q22 15q22 2009-03-06 2009-03-11 100271443 NG_010440 19123937 +HGNC:36101 RPL21P116 ribosomal protein L21 pseudogene 116 pseudogene pseudogene Approved 15q24 15q24 2009-03-06 2009-03-11 100271444 ENSG00000243711 OTTHUMG00000158036 NG_010446 19123937 +HGNC:35987 RPL21P117 ribosomal protein L21 pseudogene 117 pseudogene pseudogene Approved 15q22.2 15q22.2 2009-03-06 2009-03-11 729241 NG_009622 19123937 +HGNC:35954 RPL21P118 ribosomal protein L21 pseudogene 118 pseudogene pseudogene Approved 16q22.3 16q22.3 2009-03-06 2009-03-11 100271446 NG_010453 19123937 +HGNC:35614 RPL21P119 ribosomal protein L21 pseudogene 119 pseudogene pseudogene Approved 16p13.2 16p13.2 2009-03-06 2009-03-11 653737 ENSG00000220793 OTTHUMG00000158086 NG_010884 19123937 +HGNC:35743 RPL21P120 ribosomal protein L21 pseudogene 120 pseudogene pseudogene Approved 17p11.2 17p11.2 2009-03-06 2009-03-11 731688 ENSG00000244582 OTTHUMG00000157750 NG_009668 19123937 +HGNC:36429 RPL21P121 ribosomal protein L21 pseudogene 121 pseudogene pseudogene Approved 17p11.2 17p11.2 2009-03-06 2009-03-11 100271445 ENSG00000237382 OTTHUMG00000059395 NG_010450 19123937 +HGNC:36990 RPL21P122 ribosomal protein L21 pseudogene 122 pseudogene pseudogene Approved 17p12 17p12 2009-03-06 2009-03-11 100271447 ENSG00000241185 OTTHUMG00000157743 NG_010456 19123937 +HGNC:35691 RPL21P123 ribosomal protein L21 pseudogene 123 pseudogene pseudogene Approved 17p11.2 17p11.2 2009-03-06 2009-03-11 100271448 ENSG00000240531 OTTHUMG00000157780 NG_010460 19123937 +HGNC:36060 RPL21P124 ribosomal protein L21 pseudogene 124 pseudogene pseudogene Approved 17q21 17q21 2009-03-06 2009-03-11 100271450 NG_010469 19123937 +HGNC:36039 RPL21P125 ribosomal protein L21 pseudogene 125 pseudogene pseudogene Approved 17p13.3 17p13.3 2009-03-06 2009-03-11 100129685 NG_010788 19123937 +HGNC:35959 RPL21P126 ribosomal protein L21 pseudogene 126 pseudogene pseudogene Approved 18q21.2 18q21.2 2009-03-06 2013-09-23 100271449 ENSG00000242320 OTTHUMG00000158252 NG_010465 19123937 PGOHUM00000263628 +HGNC:36099 RPL21P127 ribosomal protein L21 pseudogene 127 pseudogene pseudogene Approved 18p11.3 18p11.3 2009-03-06 2009-03-11 100271452 ENSG00000243720 OTTHUMG00000158160 NG_010481 19123937 +HGNC:36311 RPL21P128 ribosomal protein L21 pseudogene 128 pseudogene pseudogene Approved 18q11.1 18q11.1 2009-03-06 2009-03-11 440487 NG_010871 19123937 RPL21P128 +HGNC:36747 RPL21P129 ribosomal protein L21 pseudogene 129 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2016-07-25 100271451 ENSG00000242636 OTTHUMG00000157980 NG_010476 19123937 PGOHUM00000295176 +HGNC:36453 RPL21P130 ribosomal protein L21 pseudogene 130 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2009-03-11 100271453 NG_010486 19123937 +HGNC:36428 RPL21P131 ribosomal protein L21 pseudogene 131 pseudogene pseudogene Approved 19q13.11 19q13.11 2009-03-06 2016-07-25 388532 ENSG00000232429 OTTHUMG00000158155 NG_010937 19123937 PGOHUM00000294976 +HGNC:35865 RPL21P132 ribosomal protein L21 pseudogene 132 pseudogene pseudogene Approved Xq22.1 Xq22.1 2009-03-06 2011-09-20 100271390 ENSG00000183911 OTTHUMG00000022023 NG_010154 19123937 PGOHUM00000241909 +HGNC:36003 RPL21P133 ribosomal protein L21 pseudogene 133 pseudogene pseudogene Approved Xq26.3 Xq26.3 2009-03-06 2012-11-15 100271391 ENSG00000236509 OTTHUMG00000022459 NG_010165 19123937 PGOHUM00000258443 +HGNC:36006 RPL21P134 ribosomal protein L21 pseudogene 134 pseudogene pseudogene Approved Xq13.3 Xq13.3 2009-03-06 2012-11-15 728782 ENSG00000233254 OTTHUMG00000021865 NG_011068 19123937 PGOHUM00000241859 +HGNC:44539 RPL21P135 ribosomal protein L21 pseudogene 135 pseudogene pseudogene Approved 3p22.2 03p22.2 2012-11-15 2013-02-15 100419391 ENSG00000235482 OTTHUMG00000155925 NG_025687 +HGNC:49854 RPL21P136 ribosomal protein L21 pseudogene 136 pseudogene pseudogene Approved 12p13.1 12p13.1 2014-03-18 2016-10-05 100419521 ENSG00000271215 OTTHUMG00000184724 NG_023985 PGOHUM00000257937 +HGNC:10315 RPL22 ribosomal protein L22 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "EAP|L22" L ribosomal proteins 729 1993-12-09 2014-11-18 6146 ENSG00000116251 OTTHUMG00000000953 uc001amd.4 BC058887 NM_000983 CCDS58 P35268 8395054 MGI:99262 RGD:621189 RPL22 180474 +HGNC:27610 RPL22L1 ribosomal protein L22 like 1 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 ribosomal protein L22-like 1 2005-05-10 2015-11-17 2015-11-17 200916 ENSG00000163584 OTTHUMG00000158957 uc003fhc.5 BC062731 XM_114317 "CCDS46955|CCDS82875" Q6P5R6 MGI:1915278 RGD:1309517 RPL22L1 +HGNC:17998 RPL22P1 ribosomal protein L22 pseudogene 1 pseudogene pseudogene Approved 3q26.2 03q26.2 2009-03-01 2014-11-19 125371 NG_009515 "8395054|7533526|19123937" +HGNC:19794 RPL22P2 ribosomal protein L22 pseudogene 2 pseudogene pseudogene Approved 14q24.3 14q24.3 2009-03-01 2014-11-19 326292 NG_002544 19123937 +HGNC:36804 RPL22P3 ribosomal protein L22 pseudogene 3 pseudogene pseudogene Approved 1p36.13 01p36.13 2009-03-06 2009-03-11 729662 NG_006651 19123937 +HGNC:36299 RPL22P4 ribosomal protein L22 pseudogene 4 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 100129102 NG_010420 19123937 +HGNC:37022 RPL22P5 ribosomal protein L22 pseudogene 5 pseudogene pseudogene Approved 1q21.1 01q21.1 2009-03-06 2009-03-11 100132479 ENSG00000268074 OTTHUMG00000041028 NG_010661 19123937 +HGNC:36473 RPL22P6 ribosomal protein L22 pseudogene 6 pseudogene pseudogene Approved 1p12 01p12 2009-03-06 2009-03-11 100132047 NG_011077 19123937 +HGNC:35602 RPL22P7 ribosomal protein L22 pseudogene 7 pseudogene pseudogene Approved 2q21.1 02q21.1 2009-03-06 2009-03-11 100129819 NG_010140 19123937 +HGNC:36782 RPL22P8 ribosomal protein L22 pseudogene 8 pseudogene pseudogene Approved 2q12 02q12 2009-03-06 2009-03-11 100270957 NG_010562 19123937 +HGNC:36559 RPL22P10 ribosomal protein L22 pseudogene 10 pseudogene pseudogene Approved 2q12.2 02q12.2 2009-03-06 2009-03-11 100128408 NG_010803 19123937 +HGNC:35603 RPL22P11 ribosomal protein L22 pseudogene 11 pseudogene pseudogene Approved 2q13 02q13 RPL22P15 ribosomal protein L22 pseudogene 15 2009-03-06 2014-11-19 402100 ENSG00000233707 OTTHUMG00000154956 NG_010934 19123937 PGOHUM00000240245 +HGNC:36345 RPL22P12 ribosomal protein L22 pseudogene 12 pseudogene pseudogene Approved 2q13 02q13 2009-03-06 2009-03-11 727747 NG_011008 19123937 +HGNC:36352 RPL22P13 ribosomal protein L22 pseudogene 13 pseudogene pseudogene Approved 4q12 04q12 2009-03-06 2009-03-11 442108 NG_011308 19123937 +HGNC:35990 RPL22P14 ribosomal protein L22 pseudogene 14 pseudogene pseudogene Approved 6q15 06q15 2009-03-06 2009-03-11 100270960 NG_010576 19123937 +HGNC:36536 RPL22P16 ribosomal protein L22 pseudogene 16 pseudogene pseudogene Approved 7p22.1 07p22.1 2009-03-06 2009-03-11 100270959 NG_010570 19123937 +HGNC:36985 RPL22P17 ribosomal protein L22 pseudogene 17 pseudogene pseudogene Approved 10q24.32 10q24.32 2009-03-06 2016-08-17 100271289 ENSG00000235266 OTTHUMG00000018974 NG_010956 19123937 PGOHUM00000289984 +HGNC:36232 RPL22P18 ribosomal protein L22 pseudogene 18 pseudogene pseudogene Approved 10q22.3 10q22.3 2009-03-06 2016-08-17 100271290 ENSG00000230171 OTTHUMG00000018603 NG_010959 19123937 PGOHUM00000290219 +HGNC:36567 RPL22P19 ribosomal protein L22 pseudogene 19 pseudogene pseudogene Approved 12q24.31 12q24.31 2009-03-06 2009-03-11 644022 ENSG00000241129 OTTHUMG00000157813 NG_010946 19123937 +HGNC:36281 RPL22P20 ribosomal protein L22 pseudogene 20 pseudogene pseudogene Approved 14q11.1 14q11.1 2009-03-06 2009-03-11 100128664 NG_010804 19123937 +HGNC:35547 RPL22P21 ribosomal protein L22 pseudogene 21 pseudogene pseudogene Approved 17p12 17p12 2009-03-06 2009-03-11 100271455 NG_010494 19123937 +HGNC:36109 RPL22P22 ribosomal protein L22 pseudogene 22 pseudogene pseudogene Approved Xq21.1 Xq21.1 2009-03-06 2011-09-20 100130922 ENSG00000213653 OTTHUMG00000021916 NG_010552 19123937 PGOHUM00000241415 +HGNC:10316 RPL23 ribosomal protein L23 protein-coding gene gene with protein product Approved 17q12 17q12 "rpL17|L23" L ribosomal proteins 729 1998-11-30 2015-08-25 9349 ENSG00000125691 OTTHUMG00000133118 uc002hqx.2 X52839 NM_000978 CCDS11330 P62829 1861993 MGI:1929455 RGD:62067 RPL23 603662 +HGNC:10317 RPL23A ribosomal protein L23a protein-coding gene gene with protein product Approved 17q11.2 17q11.2 L23A L ribosomal proteins 729 1997-12-23 2014-11-18 6147 ENSG00000198242 OTTHUMG00000132684 uc002hci.4 U43701 NM_000984 CCDS11241 P62750 9417910 MGI:3040672 RGD:1304897 RPL23A 602326 +HGNC:10318 RPL23AP1 ribosomal protein L23a pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 2009-03-01 2015-03-10 6148 ENSG00000239257 OTTHUMG00000031098 NG_001027 "8662070|19123937" PGOHUM00000301310 +HGNC:10319 RPL23AP2 ribosomal protein L23a pseudogene 2 pseudogene pseudogene Approved 19p13.12 19p13.12 2009-03-01 2015-03-10 401904 ENSG00000225067 OTTHUMG00000158039 NG_008068 19123937 PGOHUM00000295222 +HGNC:10320 RPL23AP3 ribosomal protein L23a pseudogene 3 pseudogene pseudogene Approved 21q22.12 21q22.12 2009-03-01 2015-03-10 8489 ENSG00000214914 OTTHUMG00000086467 NG_000878 "9740676|19123937" PGOHUM00000297257 +HGNC:10321 RPL23AP4 ribosomal protein L23a pseudogene 4 pseudogene pseudogene Approved 21q22.3 21q22.3 2009-03-01 2015-03-10 54029 ENSG00000212932 OTTHUMG00000090714 NG_000910 19123937 PGOHUM00000297392 +HGNC:14194 RPL23AP5 ribosomal protein L23a pseudogene 5 pseudogene pseudogene Approved 16p13.3 16p13.3 2009-03-01 2015-03-10 729480 Z97634 NG_006537 19123937 PGOHUM00000293683 +HGNC:16555 RPL23AP6 ribosomal protein L23a pseudogene 6 pseudogene pseudogene Approved 20p12.2 20p12.2 dJ1068F16.1 2009-03-01 2015-03-10 128709 ENSG00000214835 OTTHUMG00000031864 NG_000971 19123937 PGOHUM00000296896 +HGNC:17336 RPL23AP7 ribosomal protein L23a pseudogene 7 pseudogene pseudogene Approved 2q14.1 02q14.1 "RPL23AL1|bA395L14.9" 2009-03-01 2015-03-10 118433 ENSG00000240356 OTTHUMG00000047825 BC000596 NR_000029 19123937 PGOHUM00000298080 +HGNC:23543 RPL23AP8 ribosomal protein L23a pseudogene 8 pseudogene pseudogene Approved 14q13.1 14q13.1 RPL23AP9 ribosomal protein L23a pseudogene 9 2009-03-01 2015-03-10 641614 ENSG00000241582 OTTHUMG00000158037 AL355885 NG_006076 19123937 PGOHUM00000292619 +HGNC:19804 RPL23AP10 ribosomal protein L23a pseudogene 10 pseudogene pseudogene Approved 14q32.2 14q32.2 2009-03-01 2015-03-10 326293 ENSG00000240051 OTTHUMG00000158127 NG_002545 19123937 PGOHUM00000292443 +HGNC:19808 RPL23AP11 ribosomal protein L23a pseudogene 11 pseudogene pseudogene Approved 14q32.31 14q32.31 2009-03-01 2015-03-10 326294 ENSG00000230988 OTTHUMG00000158134 NG_002546 19123937 PGOHUM00000292450 +HGNC:23840 RPL23AP12 ribosomal protein L23a pseudogene 12 pseudogene pseudogene Approved 21q22.2 21q22.2 2009-03-01 2015-03-10 391282 ENSG00000228861 OTTHUMG00000066031 NG_009514 19123937 PGOHUM00000297382 +HGNC:21007 RPL23AP14 ribosomal protein L23a pseudogene 14 pseudogene pseudogene Approved 12p13.33 12p13.33 2009-03-01 2015-03-10 341511 ENSG00000224438 OTTHUMG00000157381 AC005841 NG_006950 19123937 PGOHUM00000291508 +HGNC:36486 RPL23AP15 ribosomal protein L23a pseudogene 15 pseudogene pseudogene Approved 1q42.13 01q42.13 2009-03-06 2015-03-10 391175 ENSG00000230841 OTTHUMG00000040047 NG_006072 19123937 PGOHUM00000296090 +HGNC:36652 RPL23AP16 ribosomal protein L23a pseudogene 16 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2015-03-10 647201 ENSG00000228190 OTTHUMG00000035886 NG_009787 19123937 PGOHUM00000296714 +HGNC:35904 RPL23AP17 ribosomal protein L23a pseudogene 17 pseudogene pseudogene Approved 1p34.2 01p34.2 2009-03-06 2015-03-10 100271138 ENSG00000215893 OTTHUMG00000005717 NG_010181 19123937 PGOHUM00000296296 +HGNC:36726 RPL23AP18 ribosomal protein L23a pseudogene 18 pseudogene pseudogene Approved 1q32.3 01q32.3 2009-03-06 2015-03-10 728134 ENSG00000225338 OTTHUMG00000036748 NG_006077 19123937 PGOHUM00000296035 +HGNC:36708 RPL23AP19 ribosomal protein L23a pseudogene 19 pseudogene pseudogene Approved 1p36.23 01p36.23 2009-03-06 2015-03-10 100131143 ENSG00000229716 OTTHUMG00000001780 NG_009753 19123937 PGOHUM00000296203 +HGNC:36622 RPL23AP20 ribosomal protein L23a pseudogene 20 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2015-03-10 645962 ENSG00000235990 OTTHUMG00000040031 NG_009606 19123937 PGOHUM00000296837 +HGNC:35827 RPL23AP21 ribosomal protein L23a pseudogene 21 pseudogene pseudogene Approved 1p36.33 01p36.33 2009-03-06 2015-03-10 728481 ENSG00000241670 OTTHUMG00000002552 NG_009563 19123937 PGOHUM00000295510 +HGNC:35505 RPL23AP22 ribosomal protein L23a pseudogene 22 pseudogene pseudogene Approved 1q31.2 01q31.2 2009-03-06 2015-03-10 100271291 ENSG00000237213 OTTHUMG00000035691 NG_010963 19123937 PGOHUM00000296003 +HGNC:36272 RPL23AP23 ribosomal protein L23a pseudogene 23 pseudogene pseudogene Approved 1q42.3 01q42.3 2009-03-06 2015-03-10 100271292 ENSG00000236863 OTTHUMG00000039622 NG_010968 19123937 PGOHUM00000296816 +HGNC:36176 RPL23AP24 ribosomal protein L23a pseudogene 24 pseudogene pseudogene Approved 1p36.33 01p36.33 2009-03-06 2015-03-10 728517 ENSG00000236679 OTTHUMG00000002854 NG_011020 19123937 PGOHUM00000295512 +HGNC:35672 RPL23AP25 ribosomal protein L23a pseudogene 25 pseudogene pseudogene Approved 1q44 01q44 2009-03-06 2015-03-10 653789 ENSG00000233084 OTTHUMG00000040422 NG_011146 19123937 PGOHUM00000296872 +HGNC:35592 RPL23AP26 ribosomal protein L23a pseudogene 26 pseudogene pseudogene Approved 2q37.1 02q37.1 2009-03-06 2015-03-10 391490 ENSG00000228884 OTTHUMG00000153865 NG_010355 19123937 PGOHUM00000298905 +HGNC:36497 RPL23AP27 ribosomal protein L23a pseudogene 27 pseudogene pseudogene Approved 2q12.1 02q12.1 2009-03-06 2015-03-10 100271456 ENSG00000225669 OTTHUMG00000153053 NG_010498 19123937 PGOHUM00000298599 +HGNC:36727 RPL23AP28 ribosomal protein L23a pseudogene 28 pseudogene pseudogene Approved 2q36.1 02q36.1 2009-03-06 2015-03-10 100271457 ENSG00000226331 OTTHUMG00000153405 NG_010502 19123937 PGOHUM00000298326 +HGNC:36355 RPL23AP29 ribosomal protein L23a pseudogene 29 pseudogene pseudogene Approved 2q23.3 02q23.3 2009-03-06 2015-03-10 100271458 ENSG00000214024 OTTHUMG00000153823 NG_010509 19123937 PGOHUM00000298761 +HGNC:35617 RPL23AP30 ribosomal protein L23a pseudogene 30 pseudogene pseudogene Approved 2q33.1 02q33.1 2009-03-06 2015-03-10 100271459 ENSG00000226658 OTTHUMG00000154712 NG_010512 19123937 PGOHUM00000298831 +HGNC:35777 RPL23AP31 ribosomal protein L23a pseudogene 31 pseudogene pseudogene Approved 2q35 02q35 2009-03-06 2015-03-10 100271460 ENSG00000232625 OTTHUMG00000154686 NG_010518 19123937 PGOHUM00000298881 +HGNC:25345 RPL23AP32 ribosomal protein L23a pseudogene 32 pseudogene pseudogene Approved 2p16.2 02p16.2 DKFZp547I014 2009-03-12 2015-03-10 56969 ENSG00000237887 OTTHUMG00000152036 NM_020217 19123937 PGOHUM00000298439 +HGNC:36946 RPL23AP33 ribosomal protein L23a pseudogene 33 pseudogene pseudogene Approved 2q32.1 02q32.1 2009-03-06 2015-03-10 100271293 ENSG00000237824 OTTHUMG00000153924 NG_010972 19123937 PGOHUM00000298252 +HGNC:36035 RPL23AP34 ribosomal protein L23a pseudogene 34 pseudogene pseudogene Approved 2p23.2 02p23.2 2009-03-06 2015-03-10 100271294 ENSG00000225991 OTTHUMG00000157055 NG_010979 19123937 PGOHUM00000298405 +HGNC:36580 RPL23AP35 ribosomal protein L23a pseudogene 35 pseudogene pseudogene Approved 2q32.1 02q32.1 2009-03-06 2015-03-10 100271295 ENSG00000232568 OTTHUMG00000154255 NG_010987 19123937 PGOHUM00000298256 +HGNC:35685 RPL23AP36 ribosomal protein L23a pseudogene 36 pseudogene pseudogene Approved 2q33.2 02q33.2 2009-03-06 2015-03-10 100271296 ENSG00000225124 OTTHUMG00000154573 NG_010993 19123937 PGOHUM00000298289 +HGNC:35664 RPL23AP37 ribosomal protein L23a pseudogene 37 pseudogene pseudogene Approved 2p14 02p14 2009-03-06 2015-03-10 130773 ENSG00000236148 OTTHUMG00000152669 NG_011103 19123937 PGOHUM00000297893 +HGNC:36351 RPL23AP38 ribosomal protein L23a pseudogene 38 pseudogene pseudogene Approved 3p26.3 03p26.3 2009-03-06 2015-03-10 391504 ENSG00000184423 OTTHUMG00000154860 NG_010432 19123937 PGOHUM00000298932 +HGNC:36470 RPL23AP39 ribosomal protein L23a pseudogene 39 pseudogene pseudogene Approved 3p26.3 03p26.3 2009-03-06 2015-03-10 100271461 ENSG00000214074 OTTHUMG00000154859 NG_010521 19123937 PGOHUM00000299329 +HGNC:35587 RPL23AP40 ribosomal protein L23a pseudogene 40 pseudogene pseudogene Approved 3q22.3 03q22.3 2009-03-06 2015-03-10 100271462 ENSG00000242321 OTTHUMG00000157382 NG_010526 19123937 PGOHUM00000299611 +HGNC:35634 RPL23AP41 ribosomal protein L23a pseudogene 41 pseudogene pseudogene Approved 3q23 03q23 2009-03-06 2015-03-10 646685 ENSG00000224085 OTTHUMG00000157383 NG_010152 19123937 PGOHUM00000299614 +HGNC:35942 RPL23AP42 ribosomal protein L23a pseudogene 42 pseudogene pseudogene Approved 3q26.1 03q26.1 2009-03-06 2015-03-10 647099 ENSG00000234851 OTTHUMG00000159072 NG_010965 19123937 PGOHUM00000299255 +HGNC:35751 RPL23AP43 ribosomal protein L23a pseudogene 43 pseudogene pseudogene Approved 3p22.3 03p22.3 2009-03-06 2015-03-10 389101 ENSG00000227337 OTTHUMG00000155776 NG_011232 19123937 PGOHUM00000299392 +HGNC:35955 RPL23AP44 ribosomal protein L23a pseudogene 44 pseudogene pseudogene Approved 5q23.1 05q23.1 2009-03-06 2015-03-10 391825 ENSG00000244088 OTTHUMG00000157833 NG_010762 19123937 PGOHUM00000300733 +HGNC:36896 RPL23AP45 ribosomal protein L23a pseudogene 45 pseudogene pseudogene Approved 5q35.3 05q35.3 2009-03-06 2015-03-10 729764 ENSG00000213285 OTTHUMG00000157971 NG_010858 19123937 PGOHUM00000301226 +HGNC:35894 RPL23AP46 ribosomal protein L23a pseudogene 46 pseudogene pseudogene Approved 6q23.2 06q23.2 2009-03-06 2015-03-10 442260 ENSG00000213122 OTTHUMG00000015596 NG_010780 19123937 PGOHUM00000301555 +HGNC:36576 RPL23AP47 ribosomal protein L23a pseudogene 47 pseudogene pseudogene Approved 6q27 06q27 2009-03-06 2015-03-10 729277 ENSG00000219814 OTTHUMG00000016091 NG_010975 19123937 PGOHUM00000302022 +HGNC:36110 RPL23AP48 ribosomal protein L23a pseudogene 48 pseudogene pseudogene Approved 6q22.31 06q22.31 2009-03-06 2015-03-10 728567 ENSG00000219135 OTTHUMG00000015483 NG_011281 19123937 PGOHUM00000301527 +HGNC:35689 RPL23AP49 ribosomal protein L23a pseudogene 49 pseudogene pseudogene Approved 3p12.3 03p12.3 2009-03-06 2015-03-10 653236 ENSG00000243422 OTTHUMG00000157322 NG_011379 19123937 PGOHUM00000299073 +HGNC:35958 RPL23AP50 ribosomal protein L23a pseudogene 50 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2015-03-10 728106 ENSG00000232778 OTTHUMG00000015314 NG_011358 19123937 PGOHUM00000301907 +HGNC:36040 RPL23AP51 ribosomal protein L23a pseudogene 51 pseudogene pseudogene Approved 7p21.3 07p21.3 2009-03-06 2015-03-10 100271464 ENSG00000269721 OTTHUMG00000182603 NG_010537 19123937 PGOHUM00000302042 +HGNC:36723 RPL23AP52 ribosomal protein L23a pseudogene 52 pseudogene pseudogene Approved 7p21.3 07p21.3 2009-03-06 2015-03-10 100271465 ENSG00000230370 OTTHUMG00000152347 NG_010541 19123937 PGOHUM00000302045 +HGNC:35921 RPL23AP53 ribosomal protein L23a pseudogene 53 pseudogene pseudogene Approved 8p23.3 08p23.3 2009-03-06 2015-03-10 644128 ENSG00000223508 OTTHUMG00000163943 NR_003572 19123937 PGOHUM00000303042 +HGNC:36689 RPL23AP54 ribosomal protein L23a pseudogene 54 pseudogene pseudogene Approved 8p23.2 08p23.2 2009-03-06 2015-03-10 100271466 ENSG00000240486 OTTHUMG00000158103 NG_010550 19123937 PGOHUM00000303405 +HGNC:35997 RPL23AP55 ribosomal protein L23a pseudogene 55 pseudogene pseudogene Approved 8p21.3 08p21.3 2009-03-06 2015-03-10 100271467 ENSG00000243265 OTTHUMG00000158583 NG_010555 19123937 PGOHUM00000303481 +HGNC:35516 RPL23AP56 ribosomal protein L23a pseudogene 56 pseudogene pseudogene Approved 8q24.22 08q24.22 2009-03-06 2015-03-10 645809 ENSG00000244413 OTTHUMG00000158697 NG_011378 19123937 PGOHUM00000303381 +HGNC:36971 RPL23AP57 ribosomal protein L23a pseudogene 57 pseudogene pseudogene Approved 9p24.1 09p24.1 2009-03-06 2015-03-10 648294 ENSG00000206147 OTTHUMG00000019525 NG_010529 19123937 PGOHUM00000304099 +HGNC:36138 RPL23AP58 ribosomal protein L23a pseudogene 58 pseudogene pseudogene Approved 10q24.32 10q24.32 2009-03-06 2015-03-10 100271616 ENSG00000228657 OTTHUMG00000018963 NG_009956 19123937 PGOHUM00000289982 +HGNC:36920 RPL23AP59 ribosomal protein L23a pseudogene 59 pseudogene pseudogene Approved 10q25.1 10q25.1 2009-03-06 2015-03-10 100271618 ENSG00000215002 OTTHUMG00000019017 NG_009967 19123937 PGOHUM00000290272 +HGNC:35966 RPL23AP60 ribosomal protein L23a pseudogene 60 pseudogene pseudogene Approved 10q26.3 10q26.3 2009-03-06 2015-03-10 728933 ENSG00000213147 OTTHUMG00000019340 NG_010522 19123937 PGOHUM00000290327 +HGNC:36016 RPL23AP61 ribosomal protein L23a pseudogene 61 pseudogene pseudogene Approved 10q11.22 10q11.22 2009-03-06 2016-08-16 728484 ENSG00000280012 OTTHUMG00000191379 NG_010857 19123937 PGOHUM00000290140 +HGNC:36276 RPL23AP62 ribosomal protein L23a pseudogene 62 pseudogene pseudogene Approved 11q23.1 11q23.1 2009-03-06 2015-03-10 100271617 ENSG00000213233 OTTHUMG00000158461 NG_009961 19123937 PGOHUM00000290709 +HGNC:35502 RPL23AP63 ribosomal protein L23a pseudogene 63 pseudogene pseudogene Approved 11p11.2 11p11.2 2009-03-06 2015-03-10 729798 ENSG00000243721 OTTHUMG00000158373 NG_011026 19123937 PGOHUM00000290885 +HGNC:36552 RPL23AP64 ribosomal protein L23a pseudogene 64 pseudogene pseudogene Approved 11q23.3 11q23.3 2009-03-06 2015-03-10 649946 ENSG00000240970 OTTHUMG00000158473 NR_003040 19123937 PGOHUM00000290722 +HGNC:36289 RPL23AP65 ribosomal protein L23a pseudogene 65 pseudogene pseudogene Approved 11p15.4 11p15.4 2009-03-06 2015-03-10 440027 ENSG00000243964 OTTHUMG00000158304 NG_011129 19123937 PGOHUM00000290818 +HGNC:35940 RPL23AP66 ribosomal protein L23a pseudogene 66 pseudogene pseudogene Approved 12p13.2 12p13.2 2009-03-06 2015-03-10 100271620 ENSG00000243141 OTTHUMG00000157461 NG_009979 19123937 PGOHUM00000291557 +HGNC:36658 RPL23AP67 ribosomal protein L23a pseudogene 67 pseudogene pseudogene Approved 12q24.33 12q24.33 2009-03-06 2015-03-10 100271622 ENSG00000240991 OTTHUMG00000157851 NG_009994 19123937 PGOHUM00000291841 +HGNC:35489 RPL23AP68 ribosomal protein L23a pseudogene 68 pseudogene pseudogene Approved 12q21.32 12q21.32 2009-03-06 2015-03-10 100130555 ENSG00000242850 OTTHUMG00000157656 NG_011302 19123937 PGOHUM00000291422 +HGNC:36625 RPL23AP69 ribosomal protein L23a pseudogene 69 pseudogene pseudogene Approved 13q12.13 13q12.13 2009-03-06 2015-03-26 100271623 ENSG00000235315 OTTHUMG00000016600 NG_010001 19123937 PGOHUM00000292108 +HGNC:36030 RPL23AP70 ribosomal protein L23a pseudogene 70 pseudogene pseudogene Approved 14q13.2 14q13.2 2009-03-06 2015-03-27 100271619 ENSG00000241052 OTTHUMG00000157752 NG_009974 19123937 PGOHUM00000292320 +HGNC:36908 RPL23AP71 ribosomal protein L23a pseudogene 71 pseudogene pseudogene Approved 14q13.1 14q13.1 2009-03-06 2015-03-27 644384 ENSG00000237450 OTTHUMG00000157728 NG_010173 19123937 PGOHUM00000292617 +HGNC:35736 RPL23AP72 ribosomal protein L23a pseudogene 72 pseudogene pseudogene Approved 16q12.1 16q12.1 2009-03-06 2015-03-10 100271621 ENSG00000239840 OTTHUMG00000158136 NG_009986 19123937 PGOHUM00000293596 +HGNC:36443 RPL23AP73 ribosomal protein L23a pseudogene 73 pseudogene pseudogene Approved 17p13.1 17p13.1 2009-03-06 2015-03-10 100271625 ENSG00000244283 OTTHUMG00000157675 NG_010014 19123937 PGOHUM00000294259 +HGNC:36148 RPL23AP74 ribosomal protein L23a pseudogene 74 pseudogene pseudogene Approved 17q23.2 17q23.2 2009-03-06 2015-03-10 729617 ENSG00000227694 OTTHUMG00000132323 NG_010068 19123937 PGOHUM00000294503 +HGNC:35975 RPL23AP75 ribosomal protein L23a pseudogene 75 pseudogene pseudogene Approved 17q21.2 17q21.2 2009-03-06 2015-03-10 728207 ENSG00000240125 OTTHUMG00000157840 NG_010749 19123937 PGOHUM00000294111 +HGNC:36555 RPL23AP76 ribosomal protein L23a pseudogene 76 pseudogene pseudogene Approved 17p12 17p12 2009-03-06 2015-03-10 441781 ENSG00000226156 OTTHUMG00000058805 NG_010940 19123937 PGOHUM00000293961 +HGNC:36354 RPL23AP77 ribosomal protein L23a pseudogene 77 pseudogene pseudogene Approved 18q11.2 18q11.2 2009-03-06 2015-03-10 728538 ENSG00000267301 OTTHUMG00000158183 NG_011124 19123937 PGOHUM00000294626 +HGNC:35518 RPL23AP78 ribosomal protein L23a pseudogene 78 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2015-03-10 100271624 ENSG00000269244 OTTHUMG00000157985 NG_010009 19123937 PGOHUM00000294856 +HGNC:36226 RPL23AP79 ribosomal protein L23a pseudogene 79 pseudogene pseudogene Approved 19q13.43 19q13.43 2009-03-06 2015-03-10 100271626 OTTHUMG00000158344 NG_010019 19123937 PGOHUM00000295500 +HGNC:36956 RPL23AP80 ribosomal protein L23a pseudogene 80 pseudogene pseudogene Approved 19q13.33 19q13.33 2009-03-06 2015-03-10 390949 ENSG00000213035 OTTHUMG00000158216 NG_010201 19123937 PGOHUM00000295056 +HGNC:36246 RPL23AP81 ribosomal protein L23a pseudogene 81 pseudogene pseudogene Approved 20q12 20q12 2009-03-06 2015-03-10 100271627 ENSG00000242748 OTTHUMG00000032477 NG_010024 19123937 PGOHUM00000297119 +HGNC:33730 RPL23AP82 ribosomal protein L23a pseudogene 82 pseudogene pseudogene Approved 22q13.33 22q13.33 MGC70863 2009-03-12 2015-03-10 284942 ENSG00000184319 OTTHUMG00000150154 NR_026981 19123937 RPL23AP82 PGOHUM00000297785 +HGNC:35846 RPL23AP83 ribosomal protein L23a pseudogene 83 pseudogene pseudogene Approved Xp11.21 Xp11.21 2009-03-06 2015-03-10 100131846 ENSG00000234135 OTTHUMG00000021665 NG_009997 19123937 PGOHUM00000304653 +HGNC:51575 RPL23AP84 ribosomal protein L23a pseudogene 84 pseudogene pseudogene Approved 4q35.2 04q35.2 2015-03-10 2015-03-10 102723981 ENSG00000261914 OTTHUMG00000179679 NG_044938 PGOHUM00000300471 +HGNC:51576 RPL23AP85 ribosomal protein L23a pseudogene 85 pseudogene pseudogene Approved 1p32.2 01p32.2 2015-03-10 2015-03-10 100419650 ENSG00000224980 OTTHUMG00000008328 NG_026942 PGOHUM00000295692 +HGNC:51577 RPL23AP86 ribosomal protein L23a pseudogene 86 pseudogene pseudogene Approved 16p13.3 16p13.3 2015-03-10 2015-03-10 100507357 ENSG00000262959 OTTHUMG00000177365 PGOHUM00000293399 +HGNC:51578 RPL23AP87 ribosomal protein L23a pseudogene 87 pseudogene pseudogene Approved 17q25.3 17q25.3 2015-03-10 2015-03-10 388574 ENSG00000232938 OTTHUMG00000177777 NR_029406 PGOHUM00000294559 +HGNC:51579 RPL23AP88 ribosomal protein L23a pseudogene 88 pseudogene pseudogene Approved 2q37.3 02q37.3 2015-03-10 2015-03-10 100289034 ENSG00000271153 OTTHUMG00000184343 NG_030145 PGOHUM00000298928 +HGNC:51623 RPL23AP89 ribosomal protein L23a pseudogene 89 pseudogene pseudogene Approved 1p36.22 01p36.22 2015-03-26 2015-03-26 106480336 ENSG00000227875 OTTHUMG00000001828 NG_044550 PGOHUM00000295546 +HGNC:51624 RPL23AP90 ribosomal protein L23a pseudogene 90 pseudogene pseudogene Approved 1p21.2 01p21.2 2015-03-26 2015-03-26 106480690 ENSG00000271415 OTTHUMG00000184296 NG_043328 PGOHUM00000296421 +HGNC:51625 RPL23AP91 ribosomal protein L23a pseudogene 91 pseudogene pseudogene Approved 16q21 16q21 2015-03-27 2015-03-27 106480337 ENSG00000260965 OTTHUMG00000175519 NG_044558 PGOHUM00000293878 +HGNC:51627 RPL23AP92 ribosomal protein L23a pseudogene 92 pseudogene pseudogene Approved 2p13.3 02p13.3 2015-03-27 2015-03-27 106481731 ENSG00000270723 OTTHUMG00000184498 NG_045056 PGOHUM00000297907 +HGNC:51628 RPL23AP93 ribosomal protein L23a pseudogene 93 pseudogene pseudogene Approved 3q29 03q29 2015-03-27 2015-03-27 100288802 ENSG00000232873 OTTHUMG00000156036 NG_029145 PGOHUM00000299313 +HGNC:51629 RPL23AP94 ribosomal protein L23a pseudogene 94 pseudogene pseudogene Approved 4q25 04q25 2015-03-27 2015-03-27 106481971 ENSG00000248439 OTTHUMG00000161131 NG_043341 PGOHUM00000299957 +HGNC:51630 RPL23AP95 ribosomal protein L23a pseudogene 95 pseudogene pseudogene Approved 7q22.1 07q22.1 2015-03-27 2015-03-27 106480338 ENSG00000236848 OTTHUMG00000157203 NG_045181 PGOHUM00000302382 +HGNC:51631 RPL23AP96 ribosomal protein L23a pseudogene 96 pseudogene pseudogene Approved 8p23.1 08p23.1 2015-03-27 2015-03-27 392181 ENSG00000250752 OTTHUMG00000160431 NG_022379 PGOHUM00000303049 +HGNC:51632 RPL23AP97 ribosomal protein L23a pseudogene 97 pseudogene pseudogene Approved 13q34 13q34 2015-03-27 2015-03-27 102723647 ENSG00000260615 OTTHUMG00000175625 PGOHUM00000292248 +HGNC:10323 RPL23P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10324 RPL23P2 ribosomal protein L23 pseudogene 2 pseudogene pseudogene Approved 21q21.3 21q21.3 2009-03-01 2016-10-05 54028 ENSG00000176054 OTTHUMG00000078804 NG_000909 19123937 PGOHUM00000239060 +HGNC:35988 RPL23P3 ribosomal protein L23 pseudogene 3 pseudogene pseudogene Approved 1p31.1 01p31.1 2009-03-06 2009-03-11 100130630 NG_010377 19123937 +HGNC:36678 RPL23P4 ribosomal protein L23 pseudogene 4 pseudogene pseudogene Approved 2q35 02q35 2009-03-06 2013-09-23 100270961 ENSG00000223903 OTTHUMG00000059375 NG_010580 19123937 PGOHUM00000241114 +HGNC:35747 RPL23P5 ribosomal protein L23 pseudogene 5 pseudogene pseudogene Approved 2q36.1 02q36.1 2009-03-06 2009-03-11 402120 NG_011036 19123937 RPL23P5 +HGNC:35554 RPL23P6 ribosomal protein L23 pseudogene 6 pseudogene pseudogene Approved 6p21.2 06p21.2 2009-03-06 2009-03-11 646949 NG_010199 19123937 +HGNC:36215 RPL23P7 ribosomal protein L23 pseudogene 7 pseudogene pseudogene Approved 7p15.2 07p15.2 2009-03-06 2009-03-11 442659 NG_009403 19123937 +HGNC:36225 RPL23P8 ribosomal protein L23 pseudogene 8 pseudogene pseudogene Approved 7p15.3 07p15.3 2009-03-06 2010-06-16 222901 NR_026673 19123937 +HGNC:36853 RPL23P9 ribosomal protein L23 pseudogene 9 pseudogene pseudogene Approved 8q22.3 08q22.3 2009-03-06 2009-03-11 100129377 NG_010503 19123937 +HGNC:36177 RPL23P10 ribosomal protein L23 pseudogene 10 pseudogene pseudogene Approved 8p12 08p12 2009-03-06 2013-09-23 100270962 ENSG00000244708 OTTHUMG00000158595 NG_010585 19123937 PGOHUM00000249296 +HGNC:36457 RPL23P11 ribosomal protein L23 pseudogene 11 pseudogene pseudogene Approved 10p11.22 10p11.22 2009-03-06 2013-09-23 100271297 ENSG00000226407 OTTHUMG00000017941 NG_010998 19123937 PGOHUM00000238719 +HGNC:10325 RPL24 ribosomal protein L24 protein-coding gene gene with protein product Approved 3q12.3 03q12.3 L24 L ribosomal proteins 729 1998-07-24 2016-10-05 6152 ENSG00000114391 OTTHUMG00000159146 uc003dvh.2 AB007177 NM_000986 CCDS33809 P83731 9582194 MGI:1915443 RGD:621191 RPL24 604180 +HGNC:16597 RPL24P2 ribosomal protein L24 pseudogene 2 pseudogene pseudogene Approved 20p11.23 20p11.23 dJ872K7.2 2009-03-01 2016-07-25 140760 ENSG00000235065 OTTHUMG00000032015 NG_001003 19123937 PGOHUM00000297067 +HGNC:19784 RPL24P3 ribosomal protein L24 pseudogene 3 pseudogene pseudogene Approved 14q24.1 14q24.1 2009-03-01 2014-11-19 145235 NG_002525 19123937 +HGNC:21371 RPL24P4 ribosomal protein L24 pseudogene 4 pseudogene pseudogene Approved 6p21.1 06p21.1 dJ125M3.1 2009-03-01 2014-11-18 377381 ENSG00000181524 OTTHUMG00000014711 AL158815 NG_008396 19123937 +HGNC:36102 RPL24P5 ribosomal protein L24 pseudogene 5 pseudogene pseudogene Approved 1q31.3 01q31.3 2009-03-06 2009-03-11 100129017 NG_011292 19123937 +HGNC:36637 RPL24P6 ribosomal protein L24 pseudogene 6 pseudogene pseudogene Approved 3q29 03q29 2009-03-06 2009-03-11 100129808 NG_009582 19123937 +HGNC:36862 RPL24P7 ribosomal protein L24 pseudogene 7 pseudogene pseudogene Approved 3p24.3 03p24.3 2009-03-06 2013-09-23 100270963 ENSG00000215016 OTTHUMG00000155609 NG_010593 19123937 PGOHUM00000237960 +HGNC:36409 RPL24P8 ribosomal protein L24 pseudogene 8 pseudogene pseudogene Approved 9q21.12 09q21.12 2009-03-06 2016-10-05 100270964 ENSG00000236801 OTTHUMG00000019989 NG_010599 19123937 PGOHUM00000236635 +HGNC:10326 RPL25P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:10327 RPL26 ribosomal protein L26 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 L26 L ribosomal proteins 729 1993-06-15 2016-10-05 6154 ENSG00000161970 OTTHUMG00000108191 uc002glh.2 NM_000987 CCDS11142 P61254 8479925 MGI:106022 RGD:1310607 RPL26 603704 317572 +HGNC:17050 RPL26L1 ribosomal protein L26 like 1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 RPL26P1 "ribosomal protein L26 pseudogene 1|ribosomal protein L26-like 1" L ribosomal proteins 729 2001-10-19 2001-12-14 2015-11-17 2016-10-05 51121 ENSG00000037241 OTTHUMG00000130517 uc063jsl.1 AF083248 NM_016093 CCDS4382 Q9UNX3 11042152 RPL26L1 +HGNC:19773 RPL26P2 ribosomal protein L26 pseudogene 2 pseudogene pseudogene Approved 14q11.2 14q11.2 2009-03-01 2014-11-19 326297 NG_002549 19123937 +HGNC:19776 RPL26P3 ribosomal protein L26 pseudogene 3 pseudogene pseudogene Approved 14q12 14q12 2009-03-01 2014-11-18 326298 ENSG00000240179 OTTHUMG00000157685 NG_002550 19123937 +HGNC:19807 RPL26P4 ribosomal protein L26 pseudogene 4 pseudogene pseudogene Approved 14q32.31 14q32.31 2009-03-01 2014-11-19 283603 NG_002527 19123937 +HGNC:31031 RPL26P5 ribosomal protein L26 pseudogene 5 pseudogene pseudogene Approved 15q26.2 15q26.2 HsT41398 2005-12-22 2009-01-23 654386 NG_009883 +HGNC:34023 RPL26P6 ribosomal protein L26 pseudogene 6 pseudogene pseudogene Approved 10q22.2 10q22.2 2009-03-01 2016-08-16 100131526 ENSG00000229659 OTTHUMG00000018465 NG_009730 19123937 PGOHUM00000289902 +HGNC:37030 RPL26P7 ribosomal protein L26 pseudogene 7 pseudogene pseudogene Approved 1p36.2 01p36.2 2009-03-06 2009-03-11 100270883 NG_010184 19123937 +HGNC:36192 RPL26P8 ribosomal protein L26 pseudogene 8 pseudogene pseudogene Approved 1p36.11 01p36.11 2009-03-06 2009-03-11 100270884 NG_010189 19123937 +HGNC:36180 RPL26P9 ribosomal protein L26 pseudogene 9 pseudogene pseudogene Approved 1p21.3 01p21.3 2009-03-06 2016-10-05 100270885 ENSG00000226128 OTTHUMG00000039677 NG_010196 19123937 PGOHUM00000263042 +HGNC:36323 RPL26P10 ribosomal protein L26 pseudogene 10 pseudogene pseudogene Approved 1p13.1 01p13.1 2009-03-06 2009-03-11 100270886 NG_010202 19123937 +HGNC:35768 RPL26P11 ribosomal protein L26 pseudogene 11 pseudogene pseudogene Approved 1q25.1 01q25.1 2009-03-06 2009-03-11 730070 NG_011107 19123937 +HGNC:36025 RPL26P12 ribosomal protein L26 pseudogene 12 pseudogene pseudogene Approved 1q24.1 01q24.1 2009-03-06 2009-03-11 391126 NG_011110 19123937 +HGNC:36639 RPL26P13 ribosomal protein L26 pseudogene 13 pseudogene pseudogene Approved 2p16.1 02p16.1 2009-03-06 2009-03-11 130865 NG_010263 19123937 +HGNC:36184 RPL26P14 ribosomal protein L26 pseudogene 14 pseudogene pseudogene Approved 2q22.3 02q22.3 2009-03-06 2009-03-11 100133235 NG_010597 19123937 +HGNC:35512 RPL26P15 ribosomal protein L26 pseudogene 15 pseudogene pseudogene Approved 2p21 02p21 2009-03-06 2009-03-11 100270965 NG_010605 19123937 +HGNC:36098 RPL26P16 ribosomal protein L26 pseudogene 16 pseudogene pseudogene Approved 4q32.3 04q32.3 2009-03-06 2009-03-11 646966 NG_010289 19123937 +HGNC:35662 RPL26P17 ribosomal protein L26 pseudogene 17 pseudogene pseudogene Approved 4q21.1 04q21.1 2009-03-06 2009-03-11 100128318 NG_010328 19123937 +HGNC:36579 RPL26P18 ribosomal protein L26 pseudogene 18 pseudogene pseudogene Approved 5q33.3 05q33.3 2009-03-06 2009-03-11 100270968 NG_010618 19123937 +HGNC:36393 RPL26P19 ribosomal protein L26 pseudogene 19 pseudogene pseudogene Approved 5q11.2 05q11.2 2009-03-06 2009-03-11 441073 ENSG00000226221 OTTHUMG00000059487 NG_008064 19123937 +HGNC:35933 RPL26P20 ribosomal protein L26 pseudogene 20 pseudogene pseudogene Approved 6q14.1 06q14.1 2009-03-06 2009-03-11 100271191 ENSG00000219722 OTTHUMG00000015057 NG_010455 19123937 +HGNC:35497 RPL26P21 ribosomal protein L26 pseudogene 21 pseudogene pseudogene Approved 7p21.2 07p21.2 2009-03-06 2009-03-11 646161 NG_010072 19123937 +HGNC:36244 RPL26P22 ribosomal protein L26 pseudogene 22 pseudogene pseudogene Approved 7q35 07q35 2009-03-06 2009-03-11 643101 NG_011354 19123937 +HGNC:36634 RPL26P23 ribosomal protein L26 pseudogene 23 pseudogene pseudogene Approved 7q36.3 07q36.3 2009-03-06 2009-03-11 100129517 NG_011231 19123937 +HGNC:35774 RPL26P24 ribosomal protein L26 pseudogene 24 pseudogene pseudogene Approved 7q35 07q35 2009-03-06 2009-03-11 728311 NG_011390 19123937 +HGNC:36383 RPL26P25 ribosomal protein L26 pseudogene 25 pseudogene pseudogene Approved 8p12 08p12 2009-03-06 2009-03-11 100270966 NG_010610 19123937 +HGNC:35693 RPL26P26 ribosomal protein L26 pseudogene 26 pseudogene pseudogene Approved 8q12.1 08q12.1 2009-03-06 2009-03-11 100270967 NG_010615 19123937 +HGNC:36735 RPL26P27 ribosomal protein L26 pseudogene 27 pseudogene pseudogene Approved 10q21.3 10q21.3 2009-03-06 2016-08-17 100271471 ENSG00000226493 OTTHUMG00000018355 NG_010572 19123937 PGOHUM00000290192 +HGNC:35776 RPL26P28 ribosomal protein L26 pseudogene 28 pseudogene pseudogene Approved 10p15.1 10p15.1 2009-03-06 2016-08-16 100130983 ENSG00000223987 OTTHUMG00000017593 NG_010872 19123937 PGOHUM00000289731 +HGNC:36135 RPL26P29 ribosomal protein L26 pseudogene 29 pseudogene pseudogene Approved 10q21.3 10q21.3 2009-03-06 2016-08-17 100131788 ENSG00000234806 OTTHUMG00000018351 NG_008066 19123937 PGOHUM00000290191 +HGNC:36733 RPL26P30 ribosomal protein L26 pseudogene 30 pseudogene pseudogene Approved 11p15.5 11p15.5 2009-03-06 2013-10-22 653147 ENSG00000236264 OTTHUMG00000009761 NG_010478 19123937 +HGNC:36907 RPL26P31 ribosomal protein L26 pseudogene 31 pseudogene pseudogene Approved 11q21-q22 11q21-q22 2009-03-06 2009-03-11 100271469 ENSG00000242807 OTTHUMG00000158440 NG_010564 19123937 +HGNC:36448 RPL26P32 ribosomal protein L26 pseudogene 32 pseudogene pseudogene Approved 12q21.31 12q21.31 2009-03-06 2009-03-11 400055 NG_006965 19123937 +HGNC:36755 RPL26P33 ribosomal protein L26 pseudogene 33 pseudogene pseudogene Approved 12q13.13 12q13.13 2009-03-06 2009-03-11 100132547 NG_011012 19123937 +HGNC:36249 RPL26P34 ribosomal protein L26 pseudogene 34 pseudogene pseudogene Approved 13q12.12 13q12.12 2009-03-06 2011-01-14 100271470 ENSG00000225404 OTTHUMG00000016587 NG_010568 19123937 PGOHUM00000248333 +HGNC:36278 RPL26P35 ribosomal protein L26 pseudogene 35 pseudogene pseudogene Approved 18q23 18q23 2009-03-06 2009-03-11 100128115 ENSG00000244229 OTTHUMG00000158266 NG_010596 19123937 +HGNC:36685 RPL26P36 ribosomal protein L26 pseudogene 36 pseudogene pseudogene Approved Xq21.31 Xq21.31 2009-03-06 2009-03-11 392501 NG_010282 19123937 +HGNC:36004 RPL26P37 ribosomal protein L26 pseudogene 37 pseudogene pseudogene Approved Yp11.2 Yp11.2 2009-03-06 2014-11-19 441533 ENSG00000235175 OTTHUMG00000035194 NG_002815 19123937 PGOHUM00000233674 +HGNC:10328 RPL27 ribosomal protein L27 protein-coding gene gene with protein product Approved 17q21 17q21 L27 60S ribosomal protein L27 L ribosomal proteins 729 1994-05-16 2015-09-07 6155 ENSG00000131469 OTTHUMG00000180660 uc060fqn.1 NM_000988 CCDS11449 P61353 1302024 MGI:98036 RGD:621192 RPL27 607526 +HGNC:10329 RPL27A ribosomal protein L27a protein-coding gene gene with protein product Approved 11p15 11p15 L27A L ribosomal proteins 729 1997-07-07 2014-11-18 6157 ENSG00000166441 OTTHUMG00000165834 uc001mgs.5 U14968 NM_000990 CCDS7790 P46776 "7772601|9582194" MGI:1347076 RGD:1309771 RPL27A 603637 +HGNC:16250 RPL27AP ribosomal protein L27a pseudogene pseudogene pseudogene Approved 20q13.11 20q13.11 dJ1028D15.2 2001-07-17 2009-01-23 128481 ENSG00000215467 OTTHUMG00000032508 NG_000965 +HGNC:36238 RPL27AP2 ribosomal protein L27a pseudogene 2 pseudogene pseudogene Approved 1q23.2 01q23.2 2009-03-06 2009-03-11 391124 NG_006951 19123937 +HGNC:35553 RPL27AP3 ribosomal protein L27a pseudogene 3 pseudogene pseudogene Approved 2q32.1 02q32.1 2009-03-06 2009-03-11 100271298 NG_011002 19123937 +HGNC:36262 RPL27AP4 ribosomal protein L27a pseudogene 4 pseudogene pseudogene Approved 2q13 02q13 2009-03-06 2009-03-11 100271299 NG_011006 19123937 +HGNC:36420 RPL27AP5 ribosomal protein L27a pseudogene 5 pseudogene pseudogene Approved 5q13.3 05q13.3 2009-03-06 2013-09-23 100271300 ENSG00000182383 OTTHUMG00000157749 NG_011014 19123937 PGOHUM00000235276 +HGNC:35977 RPL27AP6 ribosomal protein L27a pseudogene 6 pseudogene pseudogene Approved 6q25.2 06q25.2 2009-03-06 2009-03-11 389435 NG_010315 19123937 RPL27AP6 +HGNC:36064 RPL27AP7 ribosomal protein L27a pseudogene 7 pseudogene pseudogene Approved 6p12 06p12 2009-03-06 2009-03-11 100271301 NG_011018 19123937 +HGNC:36544 RPL27AP8 ribosomal protein L27a pseudogene 8 pseudogene pseudogene Approved 13q14.2 13q14.2 2009-03-06 2011-01-14 100271605 ENSG00000229423 OTTHUMG00000016884 NG_011272 19123937 PGOHUM00000248393 +HGNC:19668 RPL27P1 ribosomal protein L27 pseudogene 1 pseudogene pseudogene Approved 14q12 14q12 2009-03-01 2014-11-18 326299 NG_002551 19123937 +HGNC:36948 RPL27P2 ribosomal protein L27 pseudogene 2 pseudogene pseudogene Approved 1q23.2 01q23.2 2009-03-06 2009-03-11 646446 NG_010249 19123937 +HGNC:35503 RPL27P4 ribosomal protein L27 pseudogene 4 pseudogene pseudogene Approved 1p35.3 01p35.3 2009-03-06 2009-03-11 646624 NG_009593 19123937 +HGNC:36120 RPL27P5 ribosomal protein L27 pseudogene 5 pseudogene pseudogene Approved 2p13 02p13 2009-03-06 2009-03-11 100270969 NG_010624 19123937 +HGNC:36330 RPL27P6 ribosomal protein L27 pseudogene 6 pseudogene pseudogene Approved 2p15 02p15 2009-03-06 2009-03-11 647112 NG_011037 19123937 +HGNC:36107 RPL27P7 ribosomal protein L27 pseudogene 7 pseudogene pseudogene Approved 2q14.2 02q14.2 2009-03-06 2009-03-11 100129234 NG_011089 19123937 +HGNC:36012 RPL27P8 ribosomal protein L27 pseudogene 8 pseudogene pseudogene Approved 2q33.3 02q33.3 2009-03-06 2009-03-11 729332 NG_011266 19123937 +HGNC:36874 RPL27P9 ribosomal protein L27 pseudogene 9 pseudogene pseudogene Approved 3p14.3 03p14.3 2009-03-06 2009-03-11 100270970 NG_010630 19123937 +HGNC:35494 RPL27P10 ribosomal protein L27 pseudogene 10 pseudogene pseudogene Approved 5p13.3 05p13.3 2009-03-06 2009-03-11 202122 NG_010719 19123937 +HGNC:36533 RPL27P11 ribosomal protein L27 pseudogene 11 pseudogene pseudogene Approved 7q32.3 07q32.3 2009-03-06 2009-03-11 442723 NG_010513 19123937 +HGNC:36736 RPL27P12 ribosomal protein L27 pseudogene 12 pseudogene pseudogene Approved 12q24.31 12q24.31 2009-03-06 2009-03-11 100271302 ENSG00000239215 OTTHUMG00000157804 NG_011023 19123937 +HGNC:10330 RPL28 ribosomal protein L28 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "FLJ43307|L28" 60S ribosomal protein L28 L ribosomal proteins 729 1997-07-07 2014-11-19 6158 ENSG00000108107 OTTHUMG00000171991 uc002qkv.4 U14969 NM_000991 "CCDS12924|CCDS46189|CCDS46190|CCDS46191|CCDS46192" P46779 "7772601|9582194" MGI:101839 RGD:621193 RPL28 603638 +HGNC:31359 RPL28P1 ribosomal protein L28 pseudogene 1 pseudogene pseudogene Approved 3q26.2 03q26.2 bcm2489 2009-03-01 2014-11-19 402149 NG_009516 19123937 +HGNC:36234 RPL28P2 ribosomal protein L28 pseudogene 2 pseudogene pseudogene Approved 2q37.1 02q37.1 2009-03-06 2009-03-11 100270971 NG_010634 19123937 +HGNC:35973 RPL28P3 ribosomal protein L28 pseudogene 3 pseudogene pseudogene Approved 5q23.2 05q23.2 2009-03-06 2009-03-11 391828 NG_010782 19123937 +HGNC:36618 RPL28P4 ribosomal protein L28 pseudogene 4 pseudogene pseudogene Approved 15q22.1 15q22.1 2009-03-06 2009-03-11 441726 NG_010654 19123937 +HGNC:35766 RPL28P5 ribosomal protein L28 pseudogene 5 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2009-03-11 729279 NG_010989 19123937 +HGNC:10331 RPL29 ribosomal protein L29 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "HIP|HUMRPL29|L29" "60S ribosomal protein L29|heparin/heparan sulfate-interacting protein|HP/HS-interacting protein|heparin/heparan sulfate-binding protein|cell surface heparin-binding protein HIP" RPL29P10 ribosomal protein L29 pseudogene 10 L ribosomal proteins 729 1997-02-03 2016-10-05 6159 ENSG00000162244 OTTHUMG00000155262 uc003dcs.4 U10248 NM_000992 CCDS2845 P47914 8597591 MGI:99687 RGD:62069 RPL29 601832 +HGNC:21593 RPL29P1 ribosomal protein L29 pseudogene 1 pseudogene pseudogene Approved 6p24.3 06p24.3 dJ336K20B.2 2009-03-01 2014-11-18 134756 NG_003155 19123937 +HGNC:17334 RPL29P2 ribosomal protein L29 pseudogene 2 pseudogene pseudogene Approved 17p13 17p13 2009-03-01 2014-11-19 118432 ENSG00000240480 AF085886 NR_002778 19123937 +HGNC:23565 RPL29P3 ribosomal protein L29 pseudogene 3 pseudogene pseudogene Approved 14q13.3 14q13.3 2009-03-01 2014-11-19 729042 ENSG00000243730 OTTHUMG00000157774 AL079303 NG_009496 19123937 +HGNC:21482 RPL29P4 ribosomal protein L29 pseudogene 4 pseudogene pseudogene Approved 6q22.2 06q22.2 bA632C17A.1 RPL29P3 2009-03-01 2014-11-18 387101 NG_006976 19123937 +HGNC:36786 RPL29P5 ribosomal protein L29 pseudogene 5 pseudogene pseudogene Approved 1p31.1 01p31.1 2009-03-06 2009-03-11 646417 NG_010073 19123937 +HGNC:36627 RPL29P6 ribosomal protein L29 pseudogene 6 pseudogene pseudogene Approved 1p36.12 01p36.12 2009-03-06 2009-03-11 391019 NG_010556 19123937 +HGNC:36859 RPL29P7 ribosomal protein L29 pseudogene 7 pseudogene pseudogene Approved 1q24.2 01q24.2 2009-03-06 2013-06-07 100270972 ENSG00000213063 OTTHUMG00000034589 NG_010639 19123937 PGOHUM00000245078 +HGNC:37026 RPL29P8 ribosomal protein L29 pseudogene 8 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2009-03-11 100131991 NG_010798 19123937 +HGNC:35729 RPL29P9 ribosomal protein L29 pseudogene 9 pseudogene pseudogene Approved 3q27.3 03q27.3 2009-03-06 2009-03-11 647285 NG_010609 19123937 +HGNC:36905 RPL29P11 ribosomal protein L29 pseudogene 11 pseudogene pseudogene Approved 3p22.2 03p22.2 2009-03-06 2012-07-18 100131713 ENSG00000224858 OTTHUMG00000155865 NG_010671 19123937 PGOHUM00000237586 +HGNC:36608 RPL29P12 ribosomal protein L29 pseudogene 12 pseudogene pseudogene Approved 5p12 05p12 2009-03-06 2013-07-30 283412 ENSG00000224993 OTTHUMG00000157679 NG_010090 19123937 RPL29P12 PGOHUM00000235216 +HGNC:36461 RPL29P13 ribosomal protein L29 pseudogene 13 pseudogene pseudogene Approved 5p15.2 05p15.2 2009-03-06 2009-03-11 391738 NG_010310 19123937 RPL29P13 +HGNC:36687 RPL29P14 ribosomal protein L29 pseudogene 14 pseudogene pseudogene Approved 5q32 05q32 2009-03-06 2012-01-23 100270974 ENSG00000241112 OTTHUMG00000157900 NG_010651 19123937 PGOHUM00000235420 +HGNC:36159 RPL29P15 ribosomal protein L29 pseudogene 15 pseudogene pseudogene Approved 5q14.1 05q14.1 2009-03-06 2009-03-11 728820 NG_011265 19123937 +HGNC:36898 RPL29P16 ribosomal protein L29 pseudogene 16 pseudogene pseudogene Approved 6p21.1 06p21.1 2009-03-06 2009-03-11 100131206 NG_010701 19123937 +HGNC:36910 RPL29P17 ribosomal protein L29 pseudogene 17 pseudogene pseudogene Approved 6p22.3 06p22.3 2009-03-06 2009-03-11 645224 NG_011367 19123937 +HGNC:36327 RPL29P18 ribosomal protein L29 pseudogene 18 pseudogene pseudogene Approved 8q22.3 08q22.3 2009-03-06 2009-03-11 644103 NG_010002 19123937 +HGNC:35508 RPL29P19 ribosomal protein L29 pseudogene 19 pseudogene pseudogene Approved 8q11.21 08q11.21 2009-03-06 2009-03-11 389655 ENSG00000224594 OTTHUMG00000155292 NG_010114 19123937 +HGNC:36682 RPL29P20 ribosomal protein L29 pseudogene 20 pseudogene pseudogene Approved 9q32 09q32 2009-03-06 2009-03-11 100129332 NG_010275 19123937 +HGNC:36322 RPL29P21 ribosomal protein L29 pseudogene 21 pseudogene pseudogene Approved 11p15.1 11p15.1 2009-03-06 2009-03-11 732199 NG_010211 19123937 +HGNC:35675 RPL29P22 ribosomal protein L29 pseudogene 22 pseudogene pseudogene Approved 11q12.3 11q12.3 2009-03-06 2015-08-24 100271472 ENSG00000239924 OTTHUMG00000158399 NG_010578 19123937 PGOHUM00000290551 +HGNC:35946 RPL29P23 ribosomal protein L29 pseudogene 23 pseudogene pseudogene Approved 11p13 11p13 2009-03-06 2015-08-24 646077 ENSG00000241950 OTTHUMG00000158340 NG_011381 19123937 PGOHUM00000290431 +HGNC:35616 RPL29P24 ribosomal protein L29 pseudogene 24 pseudogene pseudogene Approved 12q24.31 12q24.31 2009-03-06 2009-03-11 100129591 ENSG00000241030 OTTHUMG00000157799 NG_010294 19123937 +HGNC:37039 RPL29P25 ribosomal protein L29 pseudogene 25 pseudogene pseudogene Approved 12q24.11 12q24.11 2009-03-06 2009-03-11 642493 ENSG00000241286 OTTHUMG00000157733 NG_011380 19123937 +HGNC:35717 RPL29P26 ribosomal protein L29 pseudogene 26 pseudogene pseudogene Approved 12q22 12q22 2009-03-06 2009-03-11 643531 NG_011051 19123937 +HGNC:35551 RPL29P27 ribosomal protein L29 pseudogene 27 pseudogene pseudogene Approved 12p11.22 12p11.22 2009-03-06 2009-03-11 100130792 NG_011196 19123937 +HGNC:36842 RPL29P28 ribosomal protein L29 pseudogene 28 pseudogene pseudogene Approved 13q13.3 13q13.3 2009-03-06 2011-01-14 646884 ENSG00000232378 OTTHUMG00000016746 NG_011177 19123937 PGOHUM00000248364 +HGNC:36577 RPL29P29 ribosomal protein L29 pseudogene 29 pseudogene pseudogene Approved 13q31.2 13q31.2 2009-03-06 2011-01-14 100271474 ENSG00000225289 OTTHUMG00000017170 NG_010587 19123937 PGOHUM00000248455 +HGNC:36601 RPL29P30 ribosomal protein L29 pseudogene 30 pseudogene pseudogene Approved 15q23 15q23 2009-03-06 2009-03-11 729611 ENSG00000235420 OTTHUMG00000157984 NG_010026 19123937 +HGNC:35944 RPL29P31 ribosomal protein L29 pseudogene 31 pseudogene pseudogene Approved 17q21.31 17q21.31 2009-03-06 2009-03-11 284064 NG_010842 19123937 +HGNC:35834 RPL29P32 ribosomal protein L29 pseudogene 32 pseudogene pseudogene Approved 18q21.2 18q21.2 2009-03-06 2009-03-11 390856 ENSG00000242945 OTTHUMG00000158250 NG_009579 19123937 +HGNC:36923 RPL29P33 ribosomal protein L29 pseudogene 33 pseudogene pseudogene Approved 19q13.11 19q13.11 2009-03-06 2013-01-23 401911 ENSG00000257074 OTTHUMG00000158175 NG_011283 19123937 PGOHUM00000234284 +HGNC:10333 RPL30 ribosomal protein L30 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 L30 L ribosomal proteins 729 1991-11-29 2016-10-05 6156 ENSG00000156482 OTTHUMG00000164796 uc003yif.4 NM_000989 CCDS34928 P62888 1577483 MGI:98037 RGD:621201 RPL30 180467 +HGNC:36642 RPL30P1 ribosomal protein L30 pseudogene 1 pseudogene pseudogene Approved 1q25.1 01q25.1 2009-03-06 2013-05-09 100270975 ENSG00000225713 OTTHUMG00000034821 NG_010656 19123937 PGOHUM00000244341 +HGNC:35642 RPL30P2 ribosomal protein L30 pseudogene 2 pseudogene pseudogene Approved 2q23.3 02q23.3 2009-03-06 2013-05-09 100270976 ENSG00000234272 OTTHUMG00000155110 NG_010662 19123937 PGOHUM00000240985 +HGNC:36380 RPL30P3 ribosomal protein L30 pseudogene 3 pseudogene pseudogene Approved 2p25.1 02p25.1 2009-03-06 2013-05-09 100270977 ENSG00000223640 OTTHUMG00000157021 NG_010666 19123937 PGOHUM00000239974 +HGNC:35871 RPL30P4 ribosomal protein L30 pseudogene 4 pseudogene pseudogene Approved 3p22.3 03p22.3 2009-03-06 2013-05-09 100131230 ENSG00000237676 OTTHUMG00000155900 NG_009720 19123937 PGOHUM00000237575 +HGNC:36302 RPL30P5 ribosomal protein L30 pseudogene 5 pseudogene pseudogene Approved 4q21.23 04q21.23 2009-03-06 2013-01-23 100270978 ENSG00000239525 OTTHUMG00000157514 NG_010673 19123937 PGOHUM00000245988 +HGNC:37015 RPL30P6 ribosomal protein L30 pseudogene 6 pseudogene pseudogene Approved 4q22.3 04q22.3 2009-03-06 2013-05-09 100270980 ENSG00000242936 OTTHUMG00000157526 NG_010684 19123937 PGOHUM00000245626 +HGNC:36402 RPL30P7 ribosomal protein L30 pseudogene 7 pseudogene pseudogene Approved 5p15.2 05p15.2 2009-03-06 2013-05-09 100270979 ENSG00000244361 OTTHUMG00000157613 NG_010677 19123937 PGOHUM00000235504 +HGNC:36058 RPL30P8 ribosomal protein L30 pseudogene 8 pseudogene pseudogene Approved 6q22.1 06q22.1 2009-03-06 2009-03-11 100132053 NG_011102 19123937 +HGNC:35763 RPL30P9 ribosomal protein L30 pseudogene 9 pseudogene pseudogene Approved 8p21.3 08p21.3 2009-03-06 2013-05-09 100270981 ENSG00000242709 OTTHUMG00000158581 NG_010689 19123937 PGOHUM00000249264 +HGNC:36822 RPL30P10 ribosomal protein L30 pseudogene 10 pseudogene pseudogene Approved 8q12.1 08q12.1 2009-03-06 2013-05-09 100270982 ENSG00000243050 OTTHUMG00000158615 NG_010695 19123937 PGOHUM00000249682 +HGNC:36260 RPL30P11 ribosomal protein L30 pseudogene 11 pseudogene pseudogene Approved 12p13.1 12p13.1 2009-03-06 2013-05-09 100271303 ENSG00000244573 OTTHUMG00000157491 NG_011030 19123937 PGOHUM00000239357 +HGNC:36909 RPL30P12 ribosomal protein L30 pseudogene 12 pseudogene pseudogene Approved 12q23.3 12q23.3 2009-03-06 2013-05-09 100271304 ENSG00000240631 OTTHUMG00000157716 NG_011034 19123937 PGOHUM00000256711 +HGNC:36280 RPL30P13 ribosomal protein L30 pseudogene 13 pseudogene pseudogene Approved 12q12 12q12 2009-03-06 2013-05-09 100271305 ENSG00000229014 OTTHUMG00000059744 NG_011039 19123937 PGOHUM00000239417 +HGNC:36257 RPL30P14 ribosomal protein L30 pseudogene 14 pseudogene pseudogene Approved 18q21.33 18q21.33 2009-03-06 2013-05-09 100129867 ENSG00000243256 OTTHUMG00000158258 NG_010405 19123937 PGOHUM00000234945 +HGNC:36542 RPL30P15 ribosomal protein L30 pseudogene 15 pseudogene pseudogene Approved Xp22.2 Xp22.2 2009-03-06 2011-09-20 100271192 ENSG00000233357 OTTHUMG00000021153 NG_010459 19123937 PGOHUM00000241647 +HGNC:48340 RPL30P16 ribosomal protein L30 pseudogene 16 pseudogene pseudogene Approved 8q23.3 08q23.3 2013-05-09 2013-05-09 100289099 ENSG00000230169 OTTHUMG00000157026 NG_030257 PGOHUM00000249782 +HGNC:10334 RPL31 ribosomal protein L31 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 L31 L ribosomal proteins 729 1990-06-11 2014-11-18 6160 ENSG00000071082 OTTHUMG00000130687 uc002taq.5 X15940 NM_001098577 "CCDS2049|CCDS46373|CCDS46374" P62899 "2780320|11875025" MGI:2149632 RGD:621202 RPL31 +HGNC:10335 RPL31P1 ribosomal protein L31 pseudogene 1 pseudogene pseudogene Approved 21q22.3 21q22.3 RPL31P ribosomal protein L31 pseudogene 2009-03-01 2001-12-14 2001-12-07 2014-11-19 54027 ENSG00000214326 OTTHUMG00000086873 NG_000908 19123937 PGOHUM00000239181 +HGNC:16575 RPL31P2 ribosomal protein L31 pseudogene 2 pseudogene pseudogene Approved 20q11.22 20q11.22 dJ553F4.5 2009-03-01 2014-11-19 140753 ENSG00000230837 OTTHUMG00000032276 AL050349 NG_000996 19123937 +HGNC:16549 RPL31P3 ribosomal protein L31 pseudogene 3 pseudogene pseudogene Approved 20q11.21 20q11.21 dJ1018D12.4 2009-03-01 2014-11-18 140718 ENSG00000237929 OTTHUMG00000032160 AL031650 NG_000989 19123937 PGOHUM00000247505 +HGNC:23546 RPL31P4 ribosomal protein L31 pseudogene 4 pseudogene pseudogene Approved 14q23.1 14q23.1 2009-03-01 2014-11-19 729646 NG_009376 19123937 +HGNC:23547 RPL31P5 ribosomal protein L31 pseudogene 5 pseudogene pseudogene Approved 14q23.2 14q23.2 2009-03-01 2014-11-19 100129928 AL136038 NG_009395 19123937 +HGNC:31032 RPL31P6 ribosomal protein L31 pseudogene 6 pseudogene pseudogene Approved 15q26.1 15q26.1 HsT19508 2009-03-01 2014-11-19 654387 AC091544 NG_009390 19123937 +HGNC:31325 RPL31P7 ribosomal protein L31 pseudogene 7 pseudogene pseudogene Approved 17q25.3 17q25.3 2009-03-01 2014-11-19 654391 ENSG00000232083 OTTHUMG00000132151 AC133012 NG_009391 19123937 +HGNC:31324 RPL31P8 ribosomal protein L31 pseudogene 8 pseudogene pseudogene Approved 5q12.1 05q12.1 2009-03-01 2014-11-19 253013 NG_005654 19123937 +HGNC:31893 RPL31P9 ribosomal protein L31 pseudogene 9 pseudogene pseudogene Approved 18q22.1 18q22.1 ribosomal protein L31 pseudogene 8 2005-10-06 2006-11-16 2009-01-23 619464 ENSG00000264054 OTTHUMG00000178515 NG_009519 +HGNC:33180 RPL31P10 ribosomal protein L31 pseudogene 10 pseudogene pseudogene Approved 12p13.31 12p13.31 2009-03-01 2014-11-19 390283 NG_009396 19123937 +HGNC:35849 RPL31P11 ribosomal protein L31 pseudogene 11 pseudogene pseudogene Approved 1q23.3 01q23.3 2009-03-06 2014-11-19 641311 ENSG00000213075 OTTHUMG00000034536 NR_002595 19123937 +HGNC:35546 RPL31P12 ribosomal protein L31 pseudogene 12 pseudogene pseudogene Approved 1p31.1 01p31.1 2009-03-06 2013-09-23 100270887 ENSG00000227207 OTTHUMG00000009455 NG_010207 19123937 PGOHUM00000244756 +HGNC:35598 RPL31P13 ribosomal protein L31 pseudogene 13 pseudogene pseudogene Approved 1q32.3 01q32.3 2009-03-06 2013-09-23 100270983 ENSG00000228646 OTTHUMG00000037067 NG_010703 19123937 PGOHUM00000251096 +HGNC:35477 RPL31P14 ribosomal protein L31 pseudogene 14 pseudogene pseudogene Approved 2q35 02q35 2009-03-06 2009-03-11 100129310 NG_010159 19123937 +HGNC:36339 RPL31P15 ribosomal protein L31 pseudogene 15 pseudogene pseudogene Approved 2q32.1 02q32.1 2009-03-06 2013-09-19 100270984 ENSG00000232430 OTTHUMG00000154210 NG_010707 19123937 PGOHUM00000241037 +HGNC:36001 RPL31P16 ribosomal protein L31 pseudogene 16 pseudogene pseudogene Approved 2p22.2 02p22.2 2009-03-06 2009-03-11 100129418 NG_010720 19123937 +HGNC:36995 RPL31P17 ribosomal protein L31 pseudogene 17 pseudogene pseudogene Approved 2q36.1 02q36.1 2009-03-06 2009-03-11 653773 NG_011063 19123937 +HGNC:35833 RPL31P18 ribosomal protein L31 pseudogene 18 pseudogene pseudogene Approved 3p22.3 03p22.3 2009-03-06 2009-03-11 285260 NG_010408 19123937 +HGNC:35589 RPL31P19 ribosomal protein L31 pseudogene 19 pseudogene pseudogene Approved 3p24.3 03p24.3 2009-03-06 2009-03-11 100270985 NG_010711 19123937 +HGNC:36303 RPL31P20 ribosomal protein L31 pseudogene 20 pseudogene pseudogene Approved 3p24.2 03p24.2 2009-03-06 2011-05-19 100270986 ENSG00000229756 OTTHUMG00000155681 NG_010717 19123937 PGOHUM00000237961 +HGNC:36245 RPL31P21 ribosomal protein L31 pseudogene 21 pseudogene pseudogene Approved 3q23 03q23 2009-03-06 2009-03-11 100270988 NG_010728 19123937 +HGNC:36430 RPL31P22 ribosomal protein L31 pseudogene 22 pseudogene pseudogene Approved 3q29 03q29 2009-03-06 2009-03-11 100270989 NG_010734 19123937 +HGNC:36096 RPL31P23 ribosomal protein L31 pseudogene 23 pseudogene pseudogene Approved 3q22.3 03q22.3 2009-03-06 2009-03-11 391581 NG_009581 19123937 +HGNC:36353 RPL31P24 ribosomal protein L31 pseudogene 24 pseudogene pseudogene Approved 4q22 04q22 2009-03-06 2009-03-11 100271194 NG_010468 19123937 +HGNC:36698 RPL31P25 ribosomal protein L31 pseudogene 25 pseudogene pseudogene Approved 4p15.31 04p15.31 2009-03-06 2009-03-11 100270987 NG_010723 19123937 +HGNC:36063 RPL31P26 ribosomal protein L31 pseudogene 26 pseudogene pseudogene Approved 4q31.23 04q31.23 2009-03-06 2009-03-11 100130537 NG_011206 19123937 +HGNC:36275 RPL31P27 ribosomal protein L31 pseudogene 27 pseudogene pseudogene Approved 6q24.2 06q24.2 2009-03-06 2009-03-11 100271198 NG_010490 19123937 +HGNC:36253 RPL31P28 ribosomal protein L31 pseudogene 28 pseudogene pseudogene Approved 6p12.1 06p12.1 2009-03-06 2009-03-11 442217 ENSG00000219863 OTTHUMG00000016250 NG_010544 19123937 +HGNC:36647 RPL31P29 ribosomal protein L31 pseudogene 29 pseudogene pseudogene Approved 6q25.2 06q25.2 2009-03-06 2009-03-11 100270990 NG_010740 19123937 +HGNC:35679 RPL31P30 ribosomal protein L31 pseudogene 30 pseudogene pseudogene Approved 2p15 02p15 2009-03-06 2009-03-11 729203 NG_011371 19123937 +HGNC:35678 RPL31P31 ribosomal protein L31 pseudogene 31 pseudogene pseudogene Approved 4p15.1 04p15.1 2009-03-06 2009-03-11 727792 NG_011387 19123937 +HGNC:35719 RPL31P32 ribosomal protein L31 pseudogene 32 pseudogene pseudogene Approved 6q14.3 06q14.3 2009-03-06 2009-03-11 643851 NG_011350 19123937 +HGNC:36886 RPL31P33 ribosomal protein L31 pseudogene 33 pseudogene pseudogene Approved 6p12.1 06p12.1 2009-03-06 2009-03-11 442218 ENSG00000218049 OTTHUMG00000014877 NG_011369 19123937 +HGNC:35853 RPL31P34 ribosomal protein L31 pseudogene 34 pseudogene pseudogene Approved 7p22.1 07p22.1 2009-03-06 2009-03-11 100271193 NG_010464 19123937 +HGNC:36932 RPL31P35 ribosomal protein L31 pseudogene 35 pseudogene pseudogene Approved 7p11.2 07p11.2 2009-03-06 2013-09-23 100271199 ENSG00000232612 OTTHUMG00000156068 NG_010493 19123937 PGOHUM00000233236 +HGNC:36676 RPL31P36 ribosomal protein L31 pseudogene 36 pseudogene pseudogene Approved 7q32 07q32 2009-03-06 2009-03-11 100271200 NG_010497 19123937 +HGNC:36197 RPL31P37 ribosomal protein L31 pseudogene 37 pseudogene pseudogene Approved 7q31.32 07q31.32 2009-03-06 2009-03-11 646787 NG_009411 19123937 +HGNC:36834 RPL31P38 ribosomal protein L31 pseudogene 38 pseudogene pseudogene Approved 7q11.21 07q11.21 2009-03-06 2009-03-11 442326 NG_011108 19123937 +HGNC:35995 RPL31P39 ribosomal protein L31 pseudogene 39 pseudogene pseudogene Approved 7q31.33 07q31.33 2009-03-06 2009-03-11 641790 NG_009415 19123937 +HGNC:36134 RPL31P40 ribosomal protein L31 pseudogene 40 pseudogene pseudogene Approved 8q13.2 08q13.2 2009-03-06 2009-03-11 100271196 ENSG00000253964 OTTHUMG00000164404 NG_010480 19123937 +HGNC:36720 RPL31P41 ribosomal protein L31 pseudogene 41 pseudogene pseudogene Approved 8q13.1 08q13.1 2009-03-06 2013-09-23 100271201 ENSG00000239261 OTTHUMG00000158619 NG_010501 19123937 PGOHUM00000250032 +HGNC:36930 RPL31P42 ribosomal protein L31 pseudogene 42 pseudogene pseudogene Approved 9p22.2 09p22.2 2009-03-06 2009-03-11 100271197 NG_010485 19123937 +HGNC:36512 RPL31P43 ribosomal protein L31 pseudogene 43 pseudogene pseudogene Approved 9q31.2 09q31.2 2009-03-06 2009-03-11 392382 NG_010985 19123937 +HGNC:35523 RPL31P44 ribosomal protein L31 pseudogene 44 pseudogene pseudogene Approved 10q21.1 10q21.1 2009-03-06 2016-08-16 644522 ENSG00000213657 OTTHUMG00000018249 NG_010889 19123937 PGOHUM00000289867 +HGNC:36796 RPL31P45 ribosomal protein L31 pseudogene 45 pseudogene pseudogene Approved 10p12.31 10p12.31 2009-03-06 2016-08-17 729308 ENSG00000233318 OTTHUMG00000017805 NG_011137 19123937 PGOHUM00000290069 +HGNC:35559 RPL31P46 ribosomal protein L31 pseudogene 46 pseudogene pseudogene Approved 11q13.4 11q13.4 2009-03-06 2009-03-11 100271479 NG_010617 19123937 +HGNC:36124 RPL31P47 ribosomal protein L31 pseudogene 47 pseudogene pseudogene Approved 11q24.1 11q24.1 2009-03-06 2009-03-11 100271481 ENSG00000233541 OTTHUMG00000158479 NG_010626 19123937 +HGNC:36129 RPL31P48 ribosomal protein L31 pseudogene 48 pseudogene pseudogene Approved 12q21.1 12q21.1 2009-03-06 2009-03-11 645654 NG_011352 19123937 +HGNC:35909 RPL31P49 ribosomal protein L31 pseudogene 49 pseudogene pseudogene Approved 12q24.11 12q24.11 2009-03-06 2009-03-11 100129882 ENSG00000241680 OTTHUMG00000157730 NG_010470 19123937 +HGNC:36799 RPL31P50 ribosomal protein L31 pseudogene 50 pseudogene pseudogene Approved 12p11.21 12p11.21 2009-03-06 2014-11-19 341356 ENSG00000231788 OTTHUMG00000157525 NG_006023 19123937 +HGNC:35600 RPL31P51 ribosomal protein L31 pseudogene 51 pseudogene pseudogene Approved 12q13 12q13 2009-03-06 2009-03-11 100271475 NG_010594 19123937 +HGNC:36607 RPL31P52 ribosomal protein L31 pseudogene 52 pseudogene pseudogene Approved 12q24.31 12q24.31 2009-03-06 2016-10-05 100271476 ENSG00000219355 OTTHUMG00000047789 NG_010601 19123937 PGOHUM00000239590 +HGNC:35749 RPL31P53 ribosomal protein L31 pseudogene 53 pseudogene pseudogene Approved 13q21.1 13q21.1 2009-03-06 2010-11-24 100271477 ENSG00000225352 OTTHUMG00000157160 NG_010607 19123937 PGOHUM00000248411 +HGNC:36077 RPL31P54 ribosomal protein L31 pseudogene 54 pseudogene pseudogene Approved 13q22.3 13q22.3 2009-03-06 2011-01-14 100271483 ENSG00000229865 OTTHUMG00000017118 NG_010636 19123937 PGOHUM00000248639 +HGNC:36982 RPL31P55 ribosomal protein L31 pseudogene 55 pseudogene pseudogene Approved 15q26.2 15q26.2 2009-03-06 2009-03-11 100128250 NG_011296 19123937 +HGNC:36336 RPL31P56 ribosomal protein L31 pseudogene 56 pseudogene pseudogene Approved 16q11.2-q13 16q11.2-q13 2009-03-06 2009-03-11 100271478 ENSG00000240760 OTTHUMG00000158145 NG_010612 19123937 +HGNC:35703 RPL31P57 ribosomal protein L31 pseudogene 57 pseudogene pseudogene Approved 17q23.3 17q23.3 2009-03-06 2009-03-11 645993 ENSG00000256358 OTTHUMG00000132313 NG_010546 19123937 +HGNC:35862 RPL31P58 ribosomal protein L31 pseudogene 58 pseudogene pseudogene Approved 17q11.2 17q11.2 2009-03-06 2012-04-27 100271485 ENSG00000243053 OTTHUMG00000157764 NG_010646 19123937 PGOHUM00000250834 +HGNC:36975 RPL31P59 ribosomal protein L31 pseudogene 59 pseudogene pseudogene Approved 18p11.3 18p11.3 2009-03-06 2009-03-11 100271480 ENSG00000240364 OTTHUMG00000158159 NG_010620 19123937 +HGNC:36123 RPL31P60 ribosomal protein L31 pseudogene 60 pseudogene pseudogene Approved 19q13.11 19q13.11 2009-03-06 2016-07-25 100271486 ENSG00000239988 OTTHUMG00000182178 NG_010653 19123937 PGOHUM00000295332 +HGNC:35635 RPL31P61 ribosomal protein L31 pseudogene 61 pseudogene pseudogene Approved 19q13.12 19q13.12 2009-03-06 2012-08-16 100271487 ENSG00000243297 OTTHUMG00000158179 NG_010658 19123937 PGOHUM00000234675 +HGNC:36569 RPL31P62 ribosomal protein L31 pseudogene 62 pseudogene pseudogene Approved 22q11.1 22q11.1 2009-03-06 2009-03-11 100271482 NG_010632 19123937 +HGNC:35666 RPL31P63 ribosomal protein L31 pseudogene 63 pseudogene pseudogene Approved Xq13.1 Xq13.1 2009-03-06 2011-09-20 100271392 ENSG00000236735 OTTHUMG00000021746 NG_010170 19123937 PGOHUM00000241827 +HGNC:10336 RPL32 ribosomal protein L32 protein-coding gene gene with protein product Approved 3p25.2 03p25.2 L32 L ribosomal proteins 729 1997-06-09 2016-10-05 6161 ENSG00000144713 OTTHUMG00000129804 uc003bxm.4 "CA436299|CF124158|CR608027" NM_000994 CCDS2614 P62910 9284913 MGI:98038 RGD:621203 RPL32 +HGNC:10339 RPL32P1 ribosomal protein L32 pseudogene 1 pseudogene pseudogene Approved 6p21.3 06p21.3 RPL32-L RPL32P ribosomal protein L32 pseudogene 2009-03-01 2001-12-14 2001-12-10 2014-11-19 6163 ENSG00000224796 OTTHUMG00000031191 X02228 NG_000869 "3866218|19123937" +HGNC:31033 RPL32P2 ribosomal protein L32 pseudogene 2 pseudogene pseudogene Approved 15q14 15q14 HsT20607 2009-03-01 2014-11-19 654388 AC079203 NG_009533 19123937 +HGNC:27024 RPL32P3 ribosomal protein L32 pseudogene 3 pseudogene pseudogene Approved 3q21.3 03q21.3 2006-08-07 2014-03-20 132241 ENSG00000251474 OTTHUMG00000159465 "AK096589|AL117606" NR_003111 12477932 RPL32P3 +HGNC:10337 RPL32P4 ribosomal protein L32 pseudogene 4 pseudogene pseudogene Approved 8q21.2 08q21.2 RPL32L ribosomal protein L32-like 2009-03-01 2009-01-23 2009-01-23 2014-11-18 100131339 NG_009522 19123937 +HGNC:10338 RPL32P5 ribosomal protein L32 pseudogene 5 pseudogene pseudogene Approved 22q11.1 22q11.1 RPL32L2 ribosomal protein L32-like 2 2009-03-01 2009-01-23 2009-01-23 2014-11-19 23754 NG_002456 "10591208|19123937" +HGNC:36655 RPL32P6 ribosomal protein L32 pseudogene 6 pseudogene pseudogene Approved 1p36.1 01p36.1 2009-03-06 2009-03-11 100270888 NG_010215 19123937 +HGNC:35804 RPL32P7 ribosomal protein L32 pseudogene 7 pseudogene pseudogene Approved 3q12.3 03q12.3 2009-03-06 2009-03-11 391560 NG_010710 19123937 +HGNC:36414 RPL32P8 ribosomal protein L32 pseudogene 8 pseudogene pseudogene Approved 3q25 03q25 2009-03-06 2009-03-11 100270991 NG_010745 19123937 +HGNC:35481 RPL32P9 ribosomal protein L32 pseudogene 9 pseudogene pseudogene Approved 3q25.1 03q25.1 2009-03-06 2013-09-23 100270992 ENSG00000241143 OTTHUMG00000157414 NG_010752 19123937 PGOHUM00000238230 +HGNC:35641 RPL32P10 ribosomal protein L32 pseudogene 10 pseudogene pseudogene Approved 3q26.33 03q26.33 2009-03-06 2009-03-11 391595 NG_010893 19123937 +HGNC:35723 RPL32P11 ribosomal protein L32 pseudogene 11 pseudogene pseudogene Approved 3p24.2 03p24.2 2009-03-06 2009-03-11 728572 NG_011306 19123937 +HGNC:36600 RPL32P12 ribosomal protein L32 pseudogene 12 pseudogene pseudogene Approved 4p15.33 04p15.33 2009-03-06 2009-03-11 731741 NG_010487 19123937 +HGNC:35950 RPL32P13 ribosomal protein L32 pseudogene 13 pseudogene pseudogene Approved 4q25 04q25 2009-03-06 2009-03-11 100270993 NG_010759 19123937 +HGNC:37038 RPL32P14 ribosomal protein L32 pseudogene 14 pseudogene pseudogene Approved 5p14.3 05p14.3 2009-03-06 2013-09-23 100270994 ENSG00000242654 OTTHUMG00000157630 NG_010763 19123937 PGOHUM00000235524 +HGNC:36119 RPL32P15 ribosomal protein L32 pseudogene 15 pseudogene pseudogene Approved 6p21.1 06p21.1 2009-03-06 2009-03-11 100132265 NG_010882 19123937 +HGNC:36086 RPL32P16 ribosomal protein L32 pseudogene 16 pseudogene pseudogene Approved 6q25.1 06q25.1 2009-03-06 2009-03-11 646104 NG_006650 19123937 +HGNC:36251 RPL32P17 ribosomal protein L32 pseudogene 17 pseudogene pseudogene Approved 7q36.1 07q36.1 2009-03-06 2009-03-11 402716 NG_010146 19123937 +HGNC:36301 RPL32P18 ribosomal protein L32 pseudogene 18 pseudogene pseudogene Approved 7p13 07p13 2009-03-06 2009-03-11 644907 NG_010235 19123937 +HGNC:36743 RPL32P19 ribosomal protein L32 pseudogene 19 pseudogene pseudogene Approved 8p22 08p22 2009-03-06 2009-03-11 646433 NG_006954 19123937 +HGNC:35934 RPL32P20 ribosomal protein L32 pseudogene 20 pseudogene pseudogene Approved 8q24.22 08q24.22 2009-03-06 2009-03-11 392271 NG_010427 19123937 +HGNC:36363 RPL32P21 ribosomal protein L32 pseudogene 21 pseudogene pseudogene Approved 9p13.2 09p13.2 2009-03-06 2009-03-11 100128004 NG_009980 19123937 +HGNC:36694 RPL32P22 ribosomal protein L32 pseudogene 22 pseudogene pseudogene Approved 9q32 09q32 2009-03-06 2009-03-11 644996 NG_010687 19123937 +HGNC:36007 RPL32P23 ribosomal protein L32 pseudogene 23 pseudogene pseudogene Approved 10p15.1 10p15.1 2009-03-06 2016-08-16 644020 ENSG00000214015 OTTHUMG00000017619 NG_010936 19123937 PGOHUM00000289732 +HGNC:36722 RPL32P24 ribosomal protein L32 pseudogene 24 pseudogene pseudogene Approved 11q13 11q13 2009-03-06 2009-03-11 100271489 NG_010668 19123937 +HGNC:35721 RPL32P25 ribosomal protein L32 pseudogene 25 pseudogene pseudogene Approved 11q21 11q21 2009-03-06 2009-03-11 100271490 NG_010675 19123937 +HGNC:36027 RPL32P26 ribosomal protein L32 pseudogene 26 pseudogene pseudogene Approved 12q14.1 12q14.1 2009-03-06 2009-03-11 100271491 ENSG00000241941 OTTHUMG00000157597 NG_010679 19123937 +HGNC:36924 RPL32P27 ribosomal protein L32 pseudogene 27 pseudogene pseudogene Approved 12q13 12q13 2009-03-06 2009-03-11 100271306 NG_011044 19123937 +HGNC:36328 RPL32P28 ribosomal protein L32 pseudogene 28 pseudogene pseudogene Approved 13q21.31 13q21.31 2009-03-06 2011-01-14 100133193 ENSG00000232105 OTTHUMG00000017018 NG_010395 19123937 PGOHUM00000248616 +HGNC:35771 RPL32P29 ribosomal protein L32 pseudogene 29 pseudogene pseudogene Approved 14q22.1 14q22.1 2009-03-06 2009-03-11 729215 ENSG00000244270 OTTHUMG00000158047 NG_010659 19123937 +HGNC:36729 RPL32P30 ribosomal protein L32 pseudogene 30 pseudogene pseudogene Approved 15q21.2 15q21.2 2009-03-06 2009-03-11 100271492 NG_010686 19123937 +HGNC:37035 RPL32P31 ribosomal protein L32 pseudogene 31 pseudogene pseudogene Approved 17q25.3 17q25.3 2009-03-06 2009-03-11 201259 ENSG00000213128 OTTHUMG00000157959 NG_010233 19123937 +HGNC:36024 RPL32P32 ribosomal protein L32 pseudogene 32 pseudogene pseudogene Approved 17q23.2 17q23.2 2009-03-06 2009-03-11 100271488 NG_010664 19123937 +HGNC:36231 RPL32P33 ribosomal protein L32 pseudogene 33 pseudogene pseudogene Approved 17q24.3 17q24.3 2009-03-06 2011-11-07 100271493 ENSG00000243514 OTTHUMG00000157932 NG_010691 19123937 PGOHUM00000237503 +HGNC:35903 RPL32P34 ribosomal protein L32 pseudogene 34 pseudogene pseudogene Approved 19p13.3 19p13.3 2009-03-06 2016-07-25 100133162 ENSG00000239524 OTTHUMG00000157976 NG_010230 19123937 PGOHUM00000295168 +HGNC:36547 RPL32P35 ribosomal protein L32 pseudogene 35 pseudogene pseudogene Approved Xq25 Xq25 2009-03-06 2011-01-17 100271393 ENSG00000223995 OTTHUMG00000022367 NG_010177 19123937 PGOHUM00000241538 +HGNC:36613 RPL32P36 ribosomal protein L32 pseudogene 36 pseudogene pseudogene Approved Xp11.4 Xp11.4 2009-03-06 2009-03-11 392447 NG_011329 19123937 RPL32P36 +HGNC:10340 RPL34 ribosomal protein L34 protein-coding gene gene with protein product Approved 4q25 04q25 L34 L ribosomal proteins 729 1998-07-24 2015-09-09 6164 ENSG00000109475 OTTHUMG00000131839 uc003hza.4 AB007181 "NM_033625|NM_000995" CCDS3680 P49207 "9582194|7490091" MGI:1915686 RGD:1309402 RPL34 616862 +HGNC:26749 RPL34-AS1 RPL34 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4q25 04q25 "FLJ37673|RP11-462C24.1" "RPL34 antisense RNA 1 (non-protein coding)|RPL34 antisense RNA 1" 2012-05-28 2012-10-15 2014-06-09 285456 ENSG00000234492 OTTHUMG00000161030 uc003hyy.3 NR_026968 24908062 +HGNC:10341 RPL34P1 ribosomal protein L34 pseudogene 1 pseudogene pseudogene Approved 1q24.2 01q24.2 2009-03-01 2015-08-24 26514 ENSG00000237049 OTTHUMG00000034647 AL021397 NG_000895 19123937 PGOHUM00000296646 +HGNC:10342 RPL34P2 ribosomal protein L34 pseudogene 2 pseudogene pseudogene Approved 11p13 11p13 2009-03-01 2014-11-18 26513 NG_000894 19123937 +HGNC:10343 RPL34P3 ribosomal protein L34 pseudogene 3 pseudogene pseudogene Approved 21q22.12 21q22.12 2000-05-23 2011-02-24 54026 ENSG00000223671 OTTHUMG00000086465 NG_000907 PGOHUM00000239071 +HGNC:36665 RPL34P4 ribosomal protein L34 pseudogene 4 pseudogene pseudogene Approved 1p36 01p36 2009-03-06 2009-03-11 100270889 NG_010221 19123937 +HGNC:36527 RPL34P5 ribosomal protein L34 pseudogene 5 pseudogene pseudogene Approved 1q21 01q21 2009-03-06 2009-03-11 100270995 NG_010769 19123937 +HGNC:35810 RPL34P6 ribosomal protein L34 pseudogene 6 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2015-08-24 100270998 ENSG00000231333 OTTHUMG00000035783 NG_010790 19123937 PGOHUM00000296721 +HGNC:35575 RPL34P7 ribosomal protein L34 pseudogene 7 pseudogene pseudogene Approved 1q42.12 01q42.12 2009-03-06 2009-03-11 100127995 NG_011301 19123937 +HGNC:36963 RPL34P8 ribosomal protein L34 pseudogene 8 pseudogene pseudogene Approved 2q12.1 02q12.1 2009-03-06 2009-03-11 100270999 NG_010794 19123937 +HGNC:36771 RPL34P9 ribosomal protein L34 pseudogene 9 pseudogene pseudogene Approved 3q13.33 03q13.33 2009-03-06 2009-03-11 100271002 NG_010812 19123937 +HGNC:36962 RPL34P10 ribosomal protein L34 pseudogene 10 pseudogene pseudogene Approved 3q27.2 03q27.2 2009-03-06 2009-03-11 100271004 NG_010819 19123937 +HGNC:36412 RPL34P11 ribosomal protein L34 pseudogene 11 pseudogene pseudogene Approved 3p24.1 03p24.1 2009-03-06 2009-03-11 100130286 NG_011235 19123937 +HGNC:35845 RPL34P12 ribosomal protein L34 pseudogene 12 pseudogene pseudogene Approved 4q26 04q26 2009-03-06 2009-03-11 100270996 NG_010777 19123937 +HGNC:36398 RPL34P13 ribosomal protein L34 pseudogene 13 pseudogene pseudogene Approved 5q23 05q23 2009-03-06 2009-03-11 100270997 NG_010783 19123937 +HGNC:35927 RPL34P14 ribosomal protein L34 pseudogene 14 pseudogene pseudogene Approved 6p21.1 06p21.1 2009-03-06 2009-03-11 100129934 NG_010743 19123937 +HGNC:35965 RPL34P15 ribosomal protein L34 pseudogene 15 pseudogene pseudogene Approved 6q26 06q26 2009-03-06 2009-03-11 100271000 NG_010799 19123937 +HGNC:37033 RPL34P16 ribosomal protein L34 pseudogene 16 pseudogene pseudogene Approved 6p25.1 06p25.1 2009-03-06 2009-03-11 100133294 NG_009837 19123937 +HGNC:36636 RPL34P17 ribosomal protein L34 pseudogene 17 pseudogene pseudogene Approved 8q11.23 08q11.23 2009-03-06 2012-10-05 100271001 ENSG00000240534 OTTHUMG00000158611 NG_010806 19123937 PGOHUM00000249339 +HGNC:35968 RPL34P18 ribosomal protein L34 pseudogene 18 pseudogene pseudogene Approved 8q22.1 08q22.1 2009-03-06 2013-09-23 100271003 ENSG00000240509 OTTHUMG00000158665 NG_010815 19123937 PGOHUM00000249432 +HGNC:36925 RPL34P19 ribosomal protein L34 pseudogene 19 pseudogene pseudogene Approved 10p11.22 10p11.22 2009-03-06 2016-08-16 100271494 ENSG00000230240 OTTHUMG00000017914 NG_010697 19123937 PGOHUM00000290089 +HGNC:35535 RPL34P20 ribosomal protein L34 pseudogene 20 pseudogene pseudogene Approved 10q24.1 10q24.1 2009-03-06 2016-08-17 100271308 ENSG00000231508 OTTHUMG00000018852 NG_011055 19123937 PGOHUM00000289970 +HGNC:35677 RPL34P21 ribosomal protein L34 pseudogene 21 pseudogene pseudogene Approved 11q24 11q24 2009-03-06 2009-03-11 100271495 ENSG00000244451 OTTHUMG00000158483 NG_010705 19123937 +HGNC:36454 RPL34P22 ribosomal protein L34 pseudogene 22 pseudogene pseudogene Approved 11p11.2 11p11.2 2009-03-06 2013-09-23 100271498 ENSG00000244267 OTTHUMG00000158375 NG_010718 19123937 PGOHUM00000250399 +HGNC:35820 RPL34P23 ribosomal protein L34 pseudogene 23 pseudogene pseudogene Approved 11q24.1 11q24.1 2009-03-06 2009-03-11 100271499 ENSG00000243669 OTTHUMG00000158475 NG_010725 19123937 +HGNC:36823 RPL34P24 ribosomal protein L34 pseudogene 24 pseudogene pseudogene Approved 11p15.5-p14 11p15.5-p14 2009-03-06 2009-03-11 100271309 NG_011059 19123937 +HGNC:35895 RPL34P25 ribosomal protein L34 pseudogene 25 pseudogene pseudogene Approved 12p12 12p12 2009-03-06 2009-03-11 100271501 NG_010736 19123937 +HGNC:36100 RPL34P26 ribosomal protein L34 pseudogene 26 pseudogene pseudogene Approved 13q14.3 13q14.3 2009-03-06 2010-11-29 100130718 ENSG00000223676 OTTHUMG00000016931 NG_010834 19123937 PGOHUM00000248399 +HGNC:36369 RPL34P27 ribosomal protein L34 pseudogene 27 pseudogene pseudogene Approved 13q12.13 13q12.13 2009-03-06 2016-10-05 651249 ENSG00000232858 OTTHUMG00000016594 NG_011246 19123937 PGOHUM00000248337 +HGNC:36781 RPL34P28 ribosomal protein L34 pseudogene 28 pseudogene pseudogene Approved 14q22 14q22 2009-03-06 2009-03-11 100271500 NG_010730 19123937 +HGNC:35631 RPL34P29 ribosomal protein L34 pseudogene 29 pseudogene pseudogene Approved 16q12.1 16q12.1 2009-03-06 2013-09-23 100271503 ENSG00000244551 OTTHUMG00000173493 NG_010747 19123937 PGOHUM00000249128 +HGNC:36477 RPL34P30 ribosomal protein L34 pseudogene 30 pseudogene pseudogene Approved 17q21 17q21 2009-03-06 2009-03-11 100271505 NG_010760 19123937 +HGNC:36899 RPL34P31 ribosomal protein L34 pseudogene 31 pseudogene pseudogene Approved 17q11.1 17q11.1 2009-03-06 2009-03-11 729536 ENSG00000239223 OTTHUMG00000157754 NG_010995 19123937 +HGNC:36902 RPL34P32 ribosomal protein L34 pseudogene 32 pseudogene pseudogene Approved 18q11.2 18q11.2 2009-03-06 2009-03-11 100271502 NG_010742 19123937 +HGNC:36666 RPL34P33 ribosomal protein L34 pseudogene 33 pseudogene pseudogene Approved 19p12 19p12 2009-03-06 2016-07-25 730061 ENSG00000241282 OTTHUMG00000158099 NG_011383 19123937 PGOHUM00000295303 +HGNC:35848 RPL34P34 ribosomal protein L34 pseudogene 34 pseudogene pseudogene Approved 19p12 19p12 2009-03-06 2016-07-25 342994 ENSG00000236312 OTTHUMG00000158097 NG_011088 19123937 PGOHUM00000294949 +HGNC:35798 RPL34P35 ribosomal protein L34 pseudogene 35 pseudogene pseudogene Approved 22q11.21 22q11.21 2009-03-06 2009-03-11 100271504 NG_010754 19123937 +HGNC:10344 RPL35 ribosomal protein L35 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 L35 60S ribosomal protein L35 L ribosomal proteins 729 1999-09-16 2016-10-05 11224 ENSG00000136942 OTTHUMG00000020659 uc004boy.2 U12465 NM_007209 CCDS6858 P42766 11401437 MGI:1913739 RGD:1303007 RPL35 +HGNC:10345 RPL35A ribosomal protein L35a protein-coding gene gene with protein product Approved 3q29 03q29 L35A L ribosomal proteins 729 1991-11-29 2015-08-25 6165 ENSG00000182899 OTTHUMG00000155386 uc003fyr.4 X52966 NM_000996 CCDS33930 P18077 "1577483|8786106" MGI:1928894 RGD:2323795 Diamond-Blackfan Anemia|http://www.dbagenes.unito.it/home.php?select_db=RPL35A RPL35A 180468 171057 +HGNC:16546 RPL35AP ribosomal protein L35a pseudogene pseudogene pseudogene Approved 20q12-q13.1 20q12-q13.1 bA456N23.1 2009-03-01 2014-11-19 140716 ENSG00000234075 OTTHUMG00000032670 NG_000987 19123937 +HGNC:19914 RPL35AP2 ribosomal protein L35a pseudogene 2 pseudogene pseudogene Approved 9p 09p bA571F15.2 2009-03-01 2014-11-18 652983 AL353662 NG_005490 19123937 +HGNC:21117 RPL35AP3 ribosomal protein L35a pseudogene 3 pseudogene pseudogene Approved 6q23.3 06q23.3 bA55K22.4 2009-03-01 2014-11-19 387074 ENSG00000230350 OTTHUMG00000015649 NG_009761 19123937 PGOHUM00000243391 +HGNC:33460 RPL35AP4 ribosomal protein L35a pseudogene 4 pseudogene pseudogene Approved 6p21 06p21 "BPG294E21.7|OTTHUMG00000140156" 2007-05-02 2014-11-19 100048922 ENSG00000225644 OTTHUMG00000140156 NG_009762 +HGNC:35570 RPL35AP5 ribosomal protein L35a pseudogene 5 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 100132122 NG_010132 19123937 +HGNC:36793 RPL35AP6 ribosomal protein L35a pseudogene 6 pseudogene pseudogene Approved 1q44 01q44 2009-03-06 2009-03-11 100271312 NG_011079 19123937 +HGNC:36212 RPL35AP7 ribosomal protein L35a pseudogene 7 pseudogene pseudogene Approved 1q23.3 01q23.3 2009-03-06 2009-03-11 100128984 NG_011118 19123937 +HGNC:36976 RPL35AP8 ribosomal protein L35a pseudogene 8 pseudogene pseudogene Approved 3p21 03p21 2009-03-06 2009-03-11 100271310 NG_011066 19123937 +HGNC:35643 RPL35AP9 ribosomal protein L35a pseudogene 9 pseudogene pseudogene Approved 3q25.32 03q25.32 2009-03-06 2009-03-11 100271311 NG_011072 19123937 +HGNC:35905 RPL35AP10 ribosomal protein L35a pseudogene 10 pseudogene pseudogene Approved 3q26.1 03q26.1 2009-03-06 2009-03-11 100271313 NG_011082 19123937 +HGNC:35708 RPL35AP11 ribosomal protein L35a pseudogene 11 pseudogene pseudogene Approved 4q22 04q22 2009-03-06 2009-03-11 100271314 NG_011086 19123937 +HGNC:36068 RPL35AP12 ribosomal protein L35a pseudogene 12 pseudogene pseudogene Approved 4q32.2 04q32.2 2009-03-06 2013-09-23 100271316 ENSG00000227283 OTTHUMG00000155271 NG_011094 19123937 PGOHUM00000246125 +HGNC:35916 RPL35AP13 ribosomal protein L35a pseudogene 13 pseudogene pseudogene Approved 5q13.2 05q13.2 2009-03-06 2009-03-11 100131945 NG_010547 19123937 +HGNC:36783 RPL35AP14 ribosomal protein L35a pseudogene 14 pseudogene pseudogene Approved 5q12.1 05q12.1 2009-03-06 2009-03-11 100271315 NG_011091 19123937 +HGNC:36974 RPL35AP15 ribosomal protein L35a pseudogene 15 pseudogene pseudogene Approved 5q23.1 05q23.1 2009-03-06 2013-09-23 100271317 ENSG00000243758 OTTHUMG00000157829 NG_011098 19123937 PGOHUM00000235365 +HGNC:35485 RPL35AP16 ribosomal protein L35a pseudogene 16 pseudogene pseudogene Approved 5q32 05q32 2009-03-06 2009-03-11 100271318 NG_011105 19123937 +HGNC:36384 RPL35AP17 ribosomal protein L35a pseudogene 17 pseudogene pseudogene Approved 5q32 05q32 2009-03-06 2009-03-11 100271319 NG_011112 19123937 +HGNC:36812 RPL35AP18 ribosomal protein L35a pseudogene 18 pseudogene pseudogene Approved 6q14 06q14 2009-03-06 2009-03-11 100271321 ENSG00000220311 OTTHUMG00000015086 NG_011120 19123937 +HGNC:36631 RPL35AP19 ribosomal protein L35a pseudogene 19 pseudogene pseudogene Approved 8q24.12 08q24.12 2009-03-06 2013-09-23 100271322 ENSG00000239872 OTTHUMG00000158692 NG_011123 19123937 PGOHUM00000249498 +HGNC:36053 RPL35AP20 ribosomal protein L35a pseudogene 20 pseudogene pseudogene Approved 9p24.1 09p24.1 2009-03-06 2009-03-11 100128277 NG_010099 19123937 +HGNC:36814 RPL35AP21 ribosomal protein L35a pseudogene 21 pseudogene pseudogene Approved 9q21.13 09q21.13 2009-03-06 2013-09-23 100271506 ENSG00000229814 OTTHUMG00000019999 NG_010765 19123937 PGOHUM00000236636 +HGNC:35932 RPL35AP22 ribosomal protein L35a pseudogene 22 pseudogene pseudogene Approved 9q33.1 09q33.1 2009-03-06 2013-09-23 100271507 ENSG00000235133 OTTHUMG00000020562 NG_010771 19123937 PGOHUM00000236320 +HGNC:36045 RPL35AP23 ribosomal protein L35a pseudogene 23 pseudogene pseudogene Approved 10q11.2 10q11.2 2009-03-06 2009-03-11 100271629 NG_010037 19123937 +HGNC:35544 RPL35AP24 ribosomal protein L35a pseudogene 24 pseudogene pseudogene Approved 10q11.23 10q11.23 2009-03-06 2016-08-17 100271631 ENSG00000230166 OTTHUMG00000018202 NG_010055 19123937 PGOHUM00000290156 +HGNC:36294 RPL35AP25 ribosomal protein L35a pseudogene 25 pseudogene pseudogene Approved 10q11.22 10q11.22 2009-03-06 2016-08-17 100271633 ENSG00000264217 OTTHUMG00000188288 NG_010067 19123937 PGOHUM00000290139 +HGNC:36465 RPL35AP26 ribosomal protein L35a pseudogene 26 pseudogene pseudogene Approved 11q24.2 11q24.2 2009-03-06 2009-03-11 100271630 ENSG00000243607 OTTHUMG00000158480 NG_010048 19123937 +HGNC:35979 RPL35AP27 ribosomal protein L35a pseudogene 27 pseudogene pseudogene Approved 12p11 12p11 2009-03-06 2009-03-11 100271635 NG_010083 19123937 +HGNC:36480 RPL35AP28 ribosomal protein L35a pseudogene 28 pseudogene pseudogene Approved 12q13 12q13 2009-03-06 2009-03-11 100271637 NG_010097 19123937 +HGNC:35569 RPL35AP29 ribosomal protein L35a pseudogene 29 pseudogene pseudogene Approved 12q13 12q13 2009-03-06 2009-03-11 100271638 NG_010103 19123937 +HGNC:36751 RPL35AP30 ribosomal protein L35a pseudogene 30 pseudogene pseudogene Approved 12q24.23 12q24.23 2009-03-06 2009-03-11 100271639 ENSG00000226729 OTTHUMG00000157759 NG_010110 19123937 +HGNC:36284 RPL35AP31 ribosomal protein L35a pseudogene 31 pseudogene pseudogene Approved 13q21.33 13q21.33 2009-03-06 2016-10-05 100271640 ENSG00000233460 OTTHUMG00000017064 NG_010117 19123937 PGOHUM00000248629 +HGNC:36269 RPL35AP32 ribosomal protein L35a pseudogene 32 pseudogene pseudogene Approved 15q22 15q22 2009-03-06 2009-03-11 100271632 ENSG00000243404 OTTHUMG00000157977 NG_010061 19123937 +HGNC:36950 RPL35AP33 ribosomal protein L35a pseudogene 33 pseudogene pseudogene Approved 16q22.1 16q22.1 2009-03-06 2009-03-11 100271634 ENSG00000241334 OTTHUMG00000158185 NG_010077 19123937 +HGNC:36324 RPL35AP34 ribosomal protein L35a pseudogene 34 pseudogene pseudogene Approved 16p13.12 16p13.12 2009-03-06 2009-03-11 100271641 NG_010123 19123937 +HGNC:36677 RPL35AP35 ribosomal protein L35a pseudogene 35 pseudogene pseudogene Approved 17q11.2 17q11.2 2009-03-06 2009-03-11 100271636 ENSG00000239256 OTTHUMG00000157776 NG_010088 19123937 +HGNC:36103 RPL35AP36 ribosomal protein L35a pseudogene 36 pseudogene pseudogene Approved 22q13.31 22q13.31 2009-03-06 2009-03-11 100128393 NG_010715 19123937 +HGNC:36426 RPL35AP37 ribosomal protein L35a pseudogene 37 pseudogene pseudogene Approved Xp22.2 Xp22.2 2009-03-06 2009-03-11 100128807 NG_010212 19123937 +HGNC:36695 RPL35P1 ribosomal protein L35 pseudogene 1 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2010-12-03 440737 ENSG00000237991 OTTHUMG00000040064 NG_010846 19123937 RPL35P1 PGOHUM00000245265 +HGNC:35789 RPL35P2 ribosomal protein L35 pseudogene 2 pseudogene pseudogene Approved 6p21.31 06p21.31 2009-03-06 2010-12-03 646766 ENSG00000220583 OTTHUMG00000014541 NG_009694 19123937 PGOHUM00000243158 +HGNC:35488 RPL35P3 ribosomal protein L35 pseudogene 3 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2010-12-03 728010 ENSG00000219902 OTTHUMG00000015294 NG_011046 19123937 PGOHUM00000243313 +HGNC:36285 RPL35P4 ribosomal protein L35 pseudogene 4 pseudogene pseudogene Approved 7p15.2 07p15.2 2009-03-06 2010-12-03 100271006 ENSG00000213783 OTTHUMG00000033372 NG_010829 19123937 PGOHUM00000232626 +HGNC:36955 RPL35P5 ribosomal protein L35 pseudogene 5 pseudogene pseudogene Approved 7q11.21 07q11.21 2009-03-06 2010-12-03 441246 ENSG00000225573 OTTHUMG00000156759 NG_009598 19123937 PGOHUM00000232852 +HGNC:35520 RPL35P6 ribosomal protein L35 pseudogene 6 pseudogene pseudogene Approved 8p22 08p22 2009-03-06 2010-12-03 100271007 ENSG00000244018 OTTHUMG00000158575 NG_010835 19123937 PGOHUM00000249263 +HGNC:35740 RPL35P7 ribosomal protein L35 pseudogene 7 pseudogene pseudogene Approved 13q33.3 13q33.3 2009-03-06 2009-03-11 341604 NG_010519 19123937 +HGNC:36158 RPL35P8 ribosomal protein L35 pseudogene 8 pseudogene pseudogene Approved 22q13.33 22q13.33 2009-03-06 2016-10-05 643653 ENSG00000226142 OTTHUMG00000150301 NG_010367 19123937 PGOHUM00000246354 +HGNC:39402 RPL35P9 ribosomal protein L35 pseudogene 9 pseudogene pseudogene Approved 13q33.3 13q33.3 2010-12-03 2010-12-03 100873796 ENSG00000174418 OTTHUMG00000017320 NG_032288 PGOHUM00000248681 +HGNC:13631 RPL36 ribosomal protein L36 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "DKFZp566B023|L36" L ribosomal proteins 729 2000-09-27 2014-11-18 25873 ENSG00000130255 OTTHUMG00000178585 uc060sbs.1 NM_015414 CCDS12147 Q9Y3U8 MGI:1860603 RGD:62085 RPL36 +HGNC:10359 RPL36A ribosomal protein L36a protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 L36A RPL44 ribosomal protein L44 L ribosomal proteins 729 1993-01-19 2002-01-18 2002-01-15 2016-04-25 6173 ENSG00000241343 OTTHUMG00000022027 uc065agx.1 BC001781 NM_021029 CCDS14483 P83881 3461443 MGI:1201789 RGD:1306640 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPL36A RPL36A 300902 +HGNC:48349 RPL36A-HNRNPH2 RPL36A-HNRNPH2 readthrough other readthrough Approved Xq22.1 Xq22.1 2013-05-10 2013-05-10 100529097 ENSG00000257529 OTTHUMG00000170052 NM_001199973 +HGNC:10346 RPL36AL ribosomal protein L36a like protein-coding gene gene with protein product Approved 14q21.3 14q21.3 RPL36A "ribosomal protein L36a|ribosomal protein L36a-like" L ribosomal proteins 729 1991-11-29 2002-01-18 2015-11-17 2016-10-05 6166 ENSG00000165502 OTTHUMG00000152330 uc001wwq.4 BC000741 NM_001001 CCDS9689 Q969Q0 1577483 MGI:1913733 RGD:621156 RPL36AL 180469 +HGNC:23548 RPL36AP1 ribosomal protein L36a pseudogene 1 pseudogene pseudogene Approved 14q23.1 14q23.1 2009-03-01 2014-11-19 100131379 AL161757 NG_009389 19123937 +HGNC:19777 RPL36AP2 ribosomal protein L36a pseudogene 2 pseudogene pseudogene Approved 14q23.3 14q23.3 2009-03-01 2014-11-19 326301 NG_002553 19123937 +HGNC:19802 RPL36AP4 ribosomal protein L36a pseudogene 4 pseudogene pseudogene Approved 14q32.12 14q32.12 2009-03-01 2014-11-19 326304 NG_002556 19123937 +HGNC:21258 RPL36AP5 ribosomal protein L36a pseudogene 5 pseudogene pseudogene Approved 6p21.1 06p21.1 bA256G5.1 2009-03-01 2014-11-19 387090 NG_009373 19123937 +HGNC:23365 RPL36AP6 ribosomal protein L36a pseudogene 6 pseudogene pseudogene Approved 9q31.2 09q31.2 bA380I20.1 2009-03-01 2014-11-19 641556 ENSG00000231293 OTTHUMG00000020453 AL162389 NG_009374 19123937 PGOHUM00000261532 +HGNC:31328 RPL36AP7 ribosomal protein L36a pseudogene 7 pseudogene pseudogene Approved 17q25.1 17q25.1 2009-03-01 2014-11-18 728202 AC011933 NG_006535 19123937 +HGNC:30973 RPL36AP8 ribosomal protein L36a pseudogene 8 pseudogene pseudogene Approved 15q14 15q14 2009-03-01 2014-11-19 643007 NG_009452 19123937 +HGNC:35872 RPL36AP9 ribosomal protein L36a pseudogene 9 pseudogene pseudogene Approved 1p34.1 01p34.1 2009-03-06 2009-03-11 100271139 NG_010185 19123937 +HGNC:36175 RPL36AP10 ribosomal protein L36a pseudogene 10 pseudogene pseudogene Approved 1p22.2 01p22.2 2009-03-06 2013-09-23 100271140 ENSG00000237959 OTTHUMG00000010023 NG_010190 19123937 PGOHUM00000261309 +HGNC:36385 RPL36AP11 ribosomal protein L36a pseudogene 11 pseudogene pseudogene Approved 1p22.1 01p22.1 2009-03-06 2009-03-11 100129180 NG_010823 19123937 +HGNC:35897 RPL36AP12 ribosomal protein L36a pseudogene 12 pseudogene pseudogene Approved 1p21.2 01p21.2 2009-03-06 2009-03-11 100130034 NG_011254 19123937 +HGNC:35877 RPL36AP13 ribosomal protein L36a pseudogene 13 pseudogene pseudogene Approved 2p23.3 02p23.3 2009-03-06 2013-09-19 100271323 ENSG00000233747 OTTHUMG00000157046 NG_011127 19123937 PGOHUM00000261351 +HGNC:36788 RPL36AP14 ribosomal protein L36a pseudogene 14 pseudogene pseudogene Approved 2p21-p16 02p21-p16 2009-03-06 2009-03-11 100271324 NG_011136 19123937 +HGNC:36648 RPL36AP15 ribosomal protein L36a pseudogene 15 pseudogene pseudogene Approved 2p16.3 02p16.3 2009-03-06 2016-10-05 100271325 ENSG00000235369 OTTHUMG00000151838 NG_011142 19123937 PGOHUM00000250427 +HGNC:36416 RPL36AP16 ribosomal protein L36a pseudogene 16 pseudogene pseudogene Approved 2p14 02p14 2009-03-06 2009-03-11 100271327 NG_011153 19123937 +HGNC:35750 RPL36AP17 ribosomal protein L36a pseudogene 17 pseudogene pseudogene Approved 3p22.3 03p22.3 2009-03-06 2009-03-11 100271326 NG_011148 19123937 +HGNC:35484 RPL36AP18 ribosomal protein L36a pseudogene 18 pseudogene pseudogene Approved 4q21.1 04q21.1 2009-03-06 2009-03-11 100271328 NG_011157 19123937 +HGNC:36436 RPL36AP19 ribosomal protein L36a pseudogene 19 pseudogene pseudogene Approved 4q25 04q25 2009-03-06 2009-03-11 100271330 NG_011165 19123937 +HGNC:36250 RPL36AP20 ribosomal protein L36a pseudogene 20 pseudogene pseudogene Approved 5q33.1 05q33.1 2009-03-06 2009-03-11 100271329 NG_011160 19123937 +HGNC:37041 RPL36AP21 ribosomal protein L36a pseudogene 21 pseudogene pseudogene Approved 5p15.1 05p15.1 2009-03-06 2013-09-23 100271332 ENSG00000240785 OTTHUMG00000157629 NG_011174 19123937 PGOHUM00000261404 +HGNC:36002 RPL36AP23 ribosomal protein L36a pseudogene 23 pseudogene pseudogene Approved 4q25 04q25 2009-03-06 2009-03-11 729075 NG_011389 19123937 +HGNC:36252 RPL36AP24 ribosomal protein L36a pseudogene 24 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2009-03-11 100271508 NG_010779 19123937 +HGNC:35926 RPL36AP25 ribosomal protein L36a pseudogene 25 pseudogene pseudogene Approved 6p22.3 06p22.3 2009-03-06 2009-03-11 100271331 NG_011170 19123937 +HGNC:36758 RPL36AP26 ribosomal protein L36a pseudogene 26 pseudogene pseudogene Approved 7p21.1 07p21.1 2009-03-06 2009-03-11 729909 ENSG00000235828 OTTHUMG00000152393 NG_011362 19123937 +HGNC:35650 RPL36AP27 ribosomal protein L36a pseudogene 27 pseudogene pseudogene Approved 7p13 07p13 2009-03-06 2009-03-11 100128072 NG_010387 19123937 +HGNC:36702 RPL36AP28 ribosomal protein L36a pseudogene 28 pseudogene pseudogene Approved 7q36.1 07q36.1 2009-03-06 2009-03-11 100271509 NG_010785 19123937 +HGNC:36897 RPL36AP29 ribosomal protein L36a pseudogene 29 pseudogene pseudogene Approved 7p21.2 07p21.2 2009-03-06 2013-07-23 100271510 ENSG00000224683 OTTHUMG00000152449 NG_010792 19123937 PGOHUM00000261479 +HGNC:36216 RPL36AP30 ribosomal protein L36a pseudogene 30 pseudogene pseudogene Approved 7q36.3 07q36.3 2009-03-06 2009-03-11 100271511 NG_010796 19123937 +HGNC:36066 RPL36AP31 ribosomal protein L36a pseudogene 31 pseudogene pseudogene Approved 8q21.2 08q21.2 2009-03-06 2009-03-11 642320 NG_010062 19123937 +HGNC:36540 RPL36AP32 ribosomal protein L36a pseudogene 32 pseudogene pseudogene Approved 8p21.1 08p21.1 2009-03-06 2009-03-11 100271512 NG_010801 19123937 +HGNC:36475 RPL36AP33 ribosomal protein L36a pseudogene 33 pseudogene pseudogene Approved 9p13.3 09p13.3 2009-03-06 2013-09-23 100191039 ENSG00000235619 OTTHUMG00000019860 NG_008765 19123937 PGOHUM00000261537 +HGNC:35882 RPL36AP34 ribosomal protein L36a pseudogene 34 pseudogene pseudogene Approved 9p21 09p21 2009-03-06 2009-03-11 100271513 NG_010808 19123937 +HGNC:35639 RPL36AP35 ribosomal protein L36a pseudogene 35 pseudogene pseudogene Approved 9q31.3 09q31.3 2009-03-06 2013-09-23 100271610 ENSG00000231810 OTTHUMG00000020460 NG_011295 19123937 +HGNC:36326 RPL36AP36 ribosomal protein L36a pseudogene 36 pseudogene pseudogene Approved 10p13 10p13 2009-03-06 2016-08-17 644834 ENSG00000237540 OTTHUMG00000017687 NG_011167 19123937 PGOHUM00000289746 +HGNC:36969 RPL36AP37 ribosomal protein L36a pseudogene 37 pseudogene pseudogene Approved 11p15.1 11p15.1 2009-03-06 2009-03-11 729362 NG_010078 19123937 +HGNC:35594 RPL36AP38 ribosomal protein L36a pseudogene 38 pseudogene pseudogene Approved 11q14 11q14 2009-03-06 2009-03-11 100271642 NG_010129 19123937 +HGNC:36074 RPL36AP39 ribosomal protein L36a pseudogene 39 pseudogene pseudogene Approved 11p15.5 11p15.5 2009-03-06 2013-09-23 100271643 ENSG00000230980 OTTHUMG00000045386 NG_010138 19123937 PGOHUM00000261119 +HGNC:36300 RPL36AP40 ribosomal protein L36a pseudogene 40 pseudogene pseudogene Approved 11p14.3 11p14.3 2009-03-06 2009-03-11 554234 ENSG00000240298 OTTHUMG00000158318 NG_005141 19123937 +HGNC:35813 RPL36AP41 ribosomal protein L36a pseudogene 41 pseudogene pseudogene Approved 12q14.2 12q14.2 2009-03-06 2012-03-22 100271644 ENSG00000242087 OTTHUMG00000157601 NG_010145 19123937 PGOHUM00000261136 +HGNC:36277 RPL36AP42 ribosomal protein L36a pseudogene 42 pseudogene pseudogene Approved 14q 14q 2009-03-06 2009-03-11 100271645 NG_010151 19123937 +HGNC:36791 RPL36AP43 ribosomal protein L36a pseudogene 43 pseudogene pseudogene Approved 15q26 15q26 2009-03-06 2009-03-11 100271646 ENSG00000241362 OTTHUMG00000158054 NG_010155 19123937 +HGNC:36986 RPL36AP44 ribosomal protein L36a pseudogene 44 pseudogene pseudogene Approved 15q22.2 15q22.2 2009-03-06 2009-03-11 100132199 NG_010534 19123937 +HGNC:36032 RPL36AP45 ribosomal protein L36a pseudogene 45 pseudogene pseudogene Approved 15q24.2 15q24.2 2009-03-06 2009-03-11 441727 ENSG00000240366 OTTHUMG00000158029 NG_011373 19123937 +HGNC:35812 RPL36AP46 ribosomal protein L36a pseudogene 46 pseudogene pseudogene Approved 17q23.2 17q23.2 2009-03-06 2009-03-11 729621 NG_010098 19123937 +HGNC:35624 RPL36AP47 ribosomal protein L36a pseudogene 47 pseudogene pseudogene Approved 17q23.2 17q23.2 2009-03-06 2009-03-11 100271647 NG_011347 19123937 +HGNC:36721 RPL36AP48 ribosomal protein L36a pseudogene 48 pseudogene pseudogene Approved 17q24.2 17q24.2 2009-03-06 2012-10-05 646175 ENSG00000213180 OTTHUMG00000157925 NG_010166 19123937 PGOHUM00000261245 +HGNC:36274 RPL36AP49 ribosomal protein L36a pseudogene 49 pseudogene pseudogene Approved 18p11.21 18p11.21 2009-03-06 2009-03-11 284230 NG_010372 19123937 +HGNC:36372 RPL36AP50 ribosomal protein L36a pseudogene 50 pseudogene pseudogene Approved 19q13.4 19q13.4 2009-03-06 2009-03-11 100271648 NG_010171 19123937 +HGNC:36632 RPL36AP51 ribosomal protein L36a pseudogene 51 pseudogene pseudogene Approved 19p12 19p12 2009-03-06 2016-07-25 649299 ENSG00000242291 OTTHUMG00000158088 NG_010444 19123937 PGOHUM00000295275 +HGNC:36517 RPL36AP53 ribosomal protein L36a pseudogene 53 pseudogene pseudogene Approved Xq23 Xq23 2009-03-06 2012-10-16 100271611 ENSG00000224664 OTTHUMG00000022222 NG_011299 19123937 PGOHUM00000261816 +HGNC:35831 RPL36AP54 ribosomal protein L36a pseudogene 54 pseudogene pseudogene Approved Xq26 Xq26 2009-03-06 2009-03-11 100271612 NG_011305 19123937 +HGNC:44939 RPL36AP55 ribosomal protein L36a pseudogene 55 pseudogene pseudogene Approved 10p12.1 10p12.1 2012-12-19 2012-12-19 100420206 ENSG00000226016 OTTHUMG00000017864 NG_025480 PGOHUM00000261090 +HGNC:16338 RPL36P1 ribosomal protein L36 pseudogene 1 pseudogene pseudogene Approved 20q13.2 20q13.2 bA80K6.3 2009-03-01 2016-10-05 140697 ENSG00000230636 OTTHUMG00000032761 NG_000983 19123937 PGOHUM00000297143 +HGNC:16570 RPL36P2 ribosomal protein L36 pseudogene 2 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ530I15.5 2009-03-01 2016-07-25 140751 ENSG00000231302 OTTHUMG00000032728 AL133230 NG_000994 19123937 PGOHUM00000297139 +HGNC:19786 RPL36P3 ribosomal protein L36 pseudogene 3 pseudogene pseudogene Approved 14q24.2 14q24.2 RPL36AP3 ribosomal protein L36a pseudogene 3 2009-03-01 2009-03-02 2009-03-02 2014-11-19 326303 NG_002555 19123937 +HGNC:16569 RPL36P4 ribosomal protein L36 pseudogene 4 pseudogene pseudogene Approved 20q11.22 20q11.22 dJ477O4.3 2009-03-01 2014-11-19 140750 ENSG00000224497 OTTHUMG00000032338 NG_000993 19123937 PGOHUM00000247522 +HGNC:35567 RPL36P5 ribosomal protein L36 pseudogene 5 pseudogene pseudogene Approved 1p36.11 01p36.11 2009-03-06 2009-03-11 127295 NG_010335 19123937 +HGNC:36046 RPL36P6 ribosomal protein L36 pseudogene 6 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2009-03-11 100271008 NG_010839 19123937 +HGNC:35830 RPL36P7 ribosomal protein L36 pseudogene 7 pseudogene pseudogene Approved 3q29 03q29 2009-03-06 2009-03-11 100271010 NG_010847 19123937 +HGNC:36493 RPL36P8 ribosomal protein L36 pseudogene 8 pseudogene pseudogene Approved 4q21.1 04q21.1 2009-03-06 2009-03-11 643205 NG_010694 19123937 +HGNC:36746 RPL36P9 ribosomal protein L36 pseudogene 9 pseudogene pseudogene Approved 6p21.2 06p21.2 2009-03-06 2009-03-11 100271009 NG_010844 19123937 +HGNC:36318 RPL36P10 ribosomal protein L36 pseudogene 10 pseudogene pseudogene Approved 6p12.3 06p12.3 2009-03-06 2009-03-11 100271011 NG_010851 19123937 +HGNC:36271 RPL36P11 ribosomal protein L36 pseudogene 11 pseudogene pseudogene Approved 5q31.3 05q31.3 2009-03-06 2009-03-11 642531 NG_011386 19123937 +HGNC:35590 RPL36P12 ribosomal protein L36 pseudogene 12 pseudogene pseudogene Approved 7q22-q31.1 07q22-q31.1 2009-03-06 2009-03-11 100271012 NG_010855 19123937 +HGNC:36941 RPL36P13 ribosomal protein L36 pseudogene 13 pseudogene pseudogene Approved 7q31 07q31 2009-03-06 2009-03-11 100271013 NG_010861 19123937 +HGNC:35734 RPL36P14 ribosomal protein L36 pseudogene 14 pseudogene pseudogene Approved 9q31.3 09q31.3 2009-03-06 2009-03-11 347292 NG_009517 19123937 RPL36P14 +HGNC:36787 RPL36P15 ribosomal protein L36 pseudogene 15 pseudogene pseudogene Approved 12q24.22 12q24.22 2009-03-06 2009-03-11 100271334 NG_011182 19123937 +HGNC:37010 RPL36P16 ribosomal protein L36 pseudogene 16 pseudogene pseudogene Approved 19q13.2 19q13.2 2009-03-06 2016-07-25 651600 ENSG00000224476 OTTHUMG00000158200 NG_000008 19123937 PGOHUM00000295373 +HGNC:35884 RPL36P17 ribosomal protein L36 pseudogene 17 pseudogene pseudogene Approved 22q12.2 22q12.2 2009-03-06 2009-03-11 100271336 NG_011192 19123937 +HGNC:36856 RPL36P18 ribosomal protein L36 pseudogene 18 pseudogene pseudogene Approved Xq23 Xq23 2009-03-06 2011-09-20 100271394 ENSG00000235656 OTTHUMG00000022231 NG_010182 19123937 PGOHUM00000241959 +HGNC:42648 RPL36P19 ribosomal protein L36 pseudogene 19 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-08-10 2011-08-10 100873855 ENSG00000232540 OTTHUMG00000016816 NG_032527 PGOHUM00000248577 +HGNC:44564 RPL36P20 ribosomal protein L36 pseudogene 20 pseudogene pseudogene Approved 3p22.1 03p22.1 2012-11-15 2012-11-15 729032 ENSG00000234270 OTTHUMG00000156199 NG_030110 PGOHUM00000238006 +HGNC:10347 RPL37 ribosomal protein L37 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 L37 60S ribosomal protein L37a L ribosomal proteins 729 1995-02-08 2014-11-19 6167 ENSG00000145592 OTTHUMG00000094774 uc021xxr.2 L11567 NM_000997 CCDS3934 P61927 "7545944|9582194" MGI:1914531 RPL37 604181 +HGNC:10348 RPL37A ribosomal protein L37a protein-coding gene gene with protein product Approved 2q35 02q35 L37A L ribosomal proteins 729 1993-05-14 2015-08-25 6168 ENSG00000197756 OTTHUMG00000133052 uc002vgf.4 NM_000998 CCDS2404 P61513 1437567 MGI:98068 RGD:2319947 RPL37A 613314 +HGNC:16548 RPL37AP1 ribosomal protein L37a pseudogene 1 pseudogene pseudogene Approved 20q13.12 20q13.12 dJ1013A22.4 2009-03-01 2016-07-25 140717 ENSG00000226243 OTTHUMG00000032532 AL132772 NG_000988 19123937 PGOHUM00000297002 +HGNC:36880 RPL37AP2 ribosomal protein L37a pseudogene 2 pseudogene pseudogene Approved 4q12 04q12 2009-03-06 2009-03-11 100271337 NG_011201 19123937 +HGNC:36222 RPL37AP3 ribosomal protein L37a pseudogene 3 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2009-03-11 100132988 NG_010643 19123937 +HGNC:35586 RPL37AP4 ribosomal protein L37a pseudogene 4 pseudogene pseudogene Approved 6q26 06q26 2009-03-06 2009-03-11 100271338 NG_011210 19123937 +HGNC:36977 RPL37AP5 ribosomal protein L37a pseudogene 5 pseudogene pseudogene Approved 7q34 07q34 2009-03-06 2009-03-11 100129856 NG_010341 19123937 +HGNC:36824 RPL37AP6 ribosomal protein L37a pseudogene 6 pseudogene pseudogene Approved 7q22-q31 07q22-q31 2009-03-06 2009-03-11 100271339 NG_011215 19123937 +HGNC:35888 RPL37AP7 ribosomal protein L37a pseudogene 7 pseudogene pseudogene Approved 11p14.1 11p14.1 2009-03-06 2009-03-11 100131730 NG_010768 19123937 +HGNC:35645 RPL37AP8 ribosomal protein L37a pseudogene 8 pseudogene pseudogene Approved 11q23.1 11q23.1 2009-03-06 2014-11-19 644338 ENSG00000176343 OTTHUMG00000158458 NG_011253 A6NKH3 19123937 +HGNC:36835 RPL37AP9 ribosomal protein L37a pseudogene 9 pseudogene pseudogene Approved 12p13.1 12p13.1 2009-03-06 2009-03-11 100271606 NG_011276 19123937 +HGNC:16337 RPL37P1 ribosomal protein L37 pseudogene 1 pseudogene pseudogene Approved 20q11.22 20q11.22 bA563A22B.2 2009-03-01 2016-07-25 140696 ENSG00000227401 OTTHUMG00000032347 AL389875 NG_000982 19123937 PGOHUM00000297112 +HGNC:17092 RPL37P2 ribosomal protein L37 pseudogene 2 pseudogene pseudogene Approved 11q13 11q13 PSANK1 2009-03-01 2014-11-19 116730 ENSG00000239559 OTTHUMG00000158400 U56856 NG_001301 19123937 +HGNC:17238 RPL37P3 ribosomal protein L37 pseudogene 3 pseudogene pseudogene Approved 21q21.1 21q21.1 RL37P 2009-03-01 2014-11-18 378818 ENSG00000215369 OTTHUMG00000074505 NG_005972 19123937 PGOHUM00000239043 +HGNC:17239 RPL37P4 ribosomal protein L37 pseudogene 4 pseudogene pseudogene Approved 21q21.1 21q21.1 RL37P2 2009-03-01 2014-11-18 378819 ENSG00000230198 OTTHUMG00000074608 NG_005973 19123937 PGOHUM00000239150 +HGNC:23549 RPL37P5 ribosomal protein L37 pseudogene 5 pseudogene pseudogene Approved 14q23.1 14q23.1 2009-03-01 2014-11-19 654369 AL049874 NG_005974 19123937 +HGNC:31080 RPL37P6 ribosomal protein L37 pseudogene 6 pseudogene pseudogene Approved 8q12.1 08q12.1 2009-03-01 2014-11-18 346950 ENSG00000241431 OTTHUMG00000158614 NG_005971 19123937 PGOHUM00000249671 +HGNC:36499 RPL37P7 ribosomal protein L37 pseudogene 7 pseudogene pseudogene Approved 1p32.3 01p32.3 2009-03-06 2009-03-11 100270890 NG_010225 19123937 +HGNC:36279 RPL37P8 ribosomal protein L37 pseudogene 8 pseudogene pseudogene Approved 1q44 01q44 2009-03-06 2009-03-11 100271014 NG_010864 19123937 +HGNC:35688 RPL37P9 ribosomal protein L37 pseudogene 9 pseudogene pseudogene Approved 1p36.31-p36.23 01p36.31-p36.23 2009-03-06 2009-03-11 100270828 NG_011217 19123937 +HGNC:36951 RPL37P10 ribosomal protein L37 pseudogene 10 pseudogene pseudogene Approved 2p11.2 02p11.2 2009-03-06 2013-09-23 100271015 ENSG00000224627 OTTHUMG00000152971 NG_010869 19123937 PGOHUM00000240700 +HGNC:36459 RPL37P11 ribosomal protein L37 pseudogene 11 pseudogene pseudogene Approved 2p23 02p23 2009-03-06 2009-03-11 100271016 NG_010873 19123937 +HGNC:36989 RPL37P12 ribosomal protein L37 pseudogene 12 pseudogene pseudogene Approved 2q13 02q13 2009-03-06 2009-03-11 100271017 NG_010879 19123937 +HGNC:36255 RPL37P13 ribosomal protein L37 pseudogene 13 pseudogene pseudogene Approved 2p15 02p15 2009-03-06 2009-03-11 100271018 NG_010885 19123937 +HGNC:36871 RPL37P14 ribosomal protein L37 pseudogene 14 pseudogene pseudogene Approved 4p13-p12 04p13-p12 2009-03-06 2009-03-11 100271019 NG_010890 19123937 +HGNC:36659 RPL37P15 ribosomal protein L37 pseudogene 15 pseudogene pseudogene Approved 6q12-q13 06q12-q13 2009-03-06 2009-03-11 100271020 ENSG00000216365 OTTHUMG00000014986 NG_010894 19123937 +HGNC:35949 RPL37P16 ribosomal protein L37 pseudogene 16 pseudogene pseudogene Approved 7q32.1 07q32.1 2009-03-06 2009-03-11 100271021 NG_010897 19123937 +HGNC:36023 RPL37P17 ribosomal protein L37 pseudogene 17 pseudogene pseudogene Approved 9q34 09q34 2009-03-06 2009-03-11 100271202 NG_010508 19123937 +HGNC:35919 RPL37P18 ribosomal protein L37 pseudogene 18 pseudogene pseudogene Approved 10p11.21 10p11.21 2009-03-06 2016-08-17 100271342 ENSG00000229235 OTTHUMG00000017945 NG_011234 19123937 PGOHUM00000289791 +HGNC:35576 RPL37P19 ribosomal protein L37 pseudogene 19 pseudogene pseudogene Approved 12q13.1 12q13.1 2009-03-06 2009-03-11 100271515 NG_010817 19123937 +HGNC:36562 RPL37P20 ribosomal protein L37 pseudogene 20 pseudogene pseudogene Approved 12p13 12p13 2009-03-06 2009-03-11 100271340 NG_011219 19123937 +HGNC:36256 RPL37P21 ribosomal protein L37 pseudogene 21 pseudogene pseudogene Approved 13q21.33 13q21.33 2009-03-06 2010-11-29 100271516 ENSG00000236433 OTTHUMG00000017047 NG_010821 19123937 PGOHUM00000248427 +HGNC:37019 RPL37P22 ribosomal protein L37 pseudogene 22 pseudogene pseudogene Approved 17q12 17q12 2009-03-06 2009-03-11 100271341 NG_011228 19123937 +HGNC:37003 RPL37P23 ribosomal protein L37 pseudogene 23 pseudogene pseudogene Approved 19q13.41 19q13.41 2009-03-06 2016-07-25 648217 ENSG00000243680 OTTHUMG00000158220 NG_010124 19123937 PGOHUM00000295420 +HGNC:36201 RPL37P24 ribosomal protein L37 pseudogene 24 pseudogene pseudogene Approved Xp11.22 Xp11.22 2009-03-06 2009-03-11 100271395 NG_010186 19123937 +HGNC:49020 RPL37P25 ribosomal protein L37 pseudogene 25 pseudogene pseudogene Approved 5q11.2 05q11.2 2013-08-08 2013-08-08 106481666 ENSG00000251597 OTTHUMG00000162288 NG_045247 PGOHUM00000235589 +HGNC:10349 RPL38 ribosomal protein L38 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 L38 L ribosomal proteins 729 1998-07-28 2015-08-25 6169 ENSG00000172809 OTTHUMG00000166016 uc002jjz.4 AB007185 NM_000999 CCDS11696 P63173 9582194 MGI:1914921 RGD:1305573 RPL38 604182 +HGNC:17093 RPL38P1 ribosomal protein L38 pseudogene 1 pseudogene pseudogene Approved 3q24 03q24 2009-03-01 2014-11-19 116809 ENSG00000241993 OTTHUMG00000157394 S70431 NG_000963 "9375793|19123937" PGOHUM00000237808 +HGNC:36620 RPL38P2 ribosomal protein L38 pseudogene 2 pseudogene pseudogene Approved 2p12 02p12 2009-03-06 2013-06-19 100129991 NG_011032 19123937 PGOHUM00000240693 +HGNC:35980 RPL38P3 ribosomal protein L38 pseudogene 3 pseudogene pseudogene Approved 4q12 04q12 2009-03-06 2013-06-19 100132311 ENSG00000244422 OTTHUMG00000157473 NG_011115 19123937 PGOHUM00000245535 +HGNC:48867 RPL38P4 ribosomal protein L38 pseudogene 4 pseudogene pseudogene Approved 3q11.2 03q11.2 2013-06-19 2013-06-19 100130963 ENSG00000250562 OTTHUMG00000160020 NG_010776 PGOHUM00000237691 +HGNC:10350 RPL39 ribosomal protein L39 protein-coding gene gene with protein product Approved Xq24 Xq24 L39 RPL39P42 ribosomal protein L39 pseudogene 42 L ribosomal proteins 729 1997-10-08 2014-11-19 6170 ENSG00000198918 OTTHUMG00000022278 uc004erx.3 NM_001000 CCDS14586 P62891 8764829 MGI:1914498 RGD:3593 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPL39 RPL39 300899 +HGNC:17094 RPL39L ribosomal protein L39 like protein-coding gene gene with protein product Approved 3q27.3 03q27.3 RPL39L1 "ribosomal protein L39-like 1|ribosomal protein L39-like" L ribosomal proteins 729 2001-10-24 2002-01-18 2015-11-17 2015-11-17 116832 ENSG00000163923 OTTHUMG00000156465 uc062rgo.1 BC012328 NM_052969 CCDS3286 Q96EH5 RGD:1561345 RPL39L 607547 +HGNC:16558 RPL39P ribosomal protein L39 pseudogene pseudogene pseudogene Approved 20q13.2 20q13.2 dJ1167H4.5 2009-03-01 2014-11-19 140719 ENSG00000228601 OTTHUMG00000032789 NG_000990 19123937 +HGNC:19774 RPL39P2 ribosomal protein L39 pseudogene 2 pseudogene pseudogene Approved 14q11.2 14q11.2 2009-03-01 2014-11-18 326306 NG_002558 19123937 +HGNC:21383 RPL39P3 ribosomal protein L39 pseudogene 3 pseudogene pseudogene Approved 6q13 06q13 Em:AC019205.3 2009-03-01 2014-11-18 285785 ENSG00000235174 OTTHUMG00000015023 NG_003156 19123937 +HGNC:31327 RPL39P4 ribosomal protein L39 pseudogene 4 pseudogene pseudogene Approved 17q21.1 17q21.1 2009-03-01 2014-11-19 654392 AC090844 NG_009535 19123937 +HGNC:26015 RPL39P5 ribosomal protein L39 pseudogene 5 pseudogene pseudogene Approved 3q22.2 03q22.2 2009-03-01 2016-10-05 553117 ENSG00000214289 OTTHUMG00000157377 AC010207 NG_010827 Q59GN2 19123937 +HGNC:35803 RPL39P6 ribosomal protein L39 pseudogene 6 pseudogene pseudogene Approved 1p36.22 01p36.22 2009-03-06 2012-10-16 100270891 ENSG00000238173 OTTHUMG00000002000 NG_010231 19123937 PGOHUM00000261305 +HGNC:36651 RPL39P7 ribosomal protein L39 pseudogene 7 pseudogene pseudogene Approved 1p36.11 01p36.11 2009-03-06 2009-03-11 100270892 NG_010238 19123937 +HGNC:36329 RPL39P8 ribosomal protein L39 pseudogene 8 pseudogene pseudogene Approved 1p13.2 01p13.2 2009-03-06 2009-03-11 100270893 NG_010241 19123937 +HGNC:35580 RPL39P9 ribosomal protein L39 pseudogene 9 pseudogene pseudogene Approved 1p21 01p21 2009-03-06 2009-03-11 100270894 NG_010246 19123937 +HGNC:35745 RPL39P10 ribosomal protein L39 pseudogene 10 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2009-03-11 100129952 NG_010843 19123937 +HGNC:36798 RPL39P11 ribosomal protein L39 pseudogene 11 pseudogene pseudogene Approved 1q25 01q25 2009-03-06 2009-03-11 100271022 NG_010901 19123937 +HGNC:36166 RPL39P12 ribosomal protein L39 pseudogene 12 pseudogene pseudogene Approved 1p36.33 01p36.33 2009-03-06 2009-03-11 100270829 NG_011226 19123937 +HGNC:36705 RPL39P13 ribosomal protein L39 pseudogene 13 pseudogene pseudogene Approved 1p22.2 01p22.2 2009-03-06 2009-03-11 100130802 NG_011255 19123937 +HGNC:36609 RPL39P14 ribosomal protein L39 pseudogene 14 pseudogene pseudogene Approved 2q33.1 02q33.1 2009-03-06 2009-03-11 100132127 NG_010167 19123937 +HGNC:35856 RPL39P15 ribosomal protein L39 pseudogene 15 pseudogene pseudogene Approved 2p14 02p14 2009-03-06 2009-03-11 647236 NG_009585 19123937 +HGNC:35912 RPL39P16 ribosomal protein L39 pseudogene 16 pseudogene pseudogene Approved 2q13 02q13 2009-03-06 2009-03-11 100271023 NG_010908 19123937 +HGNC:35545 RPL39P17 ribosomal protein L39 pseudogene 17 pseudogene pseudogene Approved 3p25.1 03p25.1 2009-03-06 2009-03-11 100271024 NG_010914 19123937 +HGNC:36111 RPL39P18 ribosomal protein L39 pseudogene 18 pseudogene pseudogene Approved 3p24.3 03p24.3 2009-03-06 2009-03-11 100271025 ENSG00000229468 OTTHUMG00000155391 NG_010919 19123937 +HGNC:36346 RPL39P19 ribosomal protein L39 pseudogene 19 pseudogene pseudogene Approved 3q27 03q27 2009-03-06 2009-03-11 100271027 NG_010926 19123937 +HGNC:36366 RPL39P20 ribosomal protein L39 pseudogene 20 pseudogene pseudogene Approved 5q14.1 05q14.1 2009-03-06 2009-03-11 100131160 NG_010462 19123937 +HGNC:36218 RPL39P21 ribosomal protein L39 pseudogene 21 pseudogene pseudogene Approved 5q13.3 05q13.3 2009-03-06 2009-03-11 644499 NG_010774 19123937 +HGNC:36072 RPL39P22 ribosomal protein L39 pseudogene 22 pseudogene pseudogene Approved 5p13 05p13 2009-03-06 2009-03-11 100271028 NG_010931 19123937 +HGNC:36581 RPL39P23 ribosomal protein L39 pseudogene 23 pseudogene pseudogene Approved 7p12-p11.2 07p12-p11.2 2009-03-06 2009-03-11 100271203 NG_010511 19123937 +HGNC:36431 RPL39P24 ribosomal protein L39 pseudogene 24 pseudogene pseudogene Approved 9q34.13 09q34.13 2009-03-06 2009-03-11 100271396 NG_010191 19123937 +HGNC:37002 RPL39P25 ribosomal protein L39 pseudogene 25 pseudogene pseudogene Approved 10q22.2 10q22.2 2009-03-06 2016-08-17 100271517 ENSG00000227271 OTTHUMG00000018520 NG_010826 19123937 PGOHUM00000289910 +HGNC:35900 RPL39P26 ribosomal protein L39 pseudogene 26 pseudogene pseudogene Approved 11p15.2 11p15.2 2009-03-06 2009-03-11 100271518 ENSG00000240454 OTTHUMG00000158307 NG_010831 19123937 +HGNC:36114 RPL39P27 ribosomal protein L39 pseudogene 27 pseudogene pseudogene Approved 12p12.1 12p12.1 2009-03-06 2009-03-11 100133222 NG_010530 19123937 +HGNC:35619 RPL39P28 ribosomal protein L39 pseudogene 28 pseudogene pseudogene Approved 12q15 12q15 2009-03-06 2012-05-02 100271520 ENSG00000244432 OTTHUMG00000157610 NG_010840 19123937 PGOHUM00000239510 +HGNC:35808 RPL39P29 ribosomal protein L39 pseudogene 29 pseudogene pseudogene Approved 13q33.1 13q33.1 2009-03-06 2016-10-05 100271522 ENSG00000236860 OTTHUMG00000017300 NG_010848 19123937 PGOHUM00000248489 +HGNC:36979 RPL39P30 ribosomal protein L39 pseudogene 30 pseudogene pseudogene Approved 16q24.2 16q24.2 2009-03-06 2009-03-11 100271519 NG_010837 19123937 +HGNC:36488 RPL39P31 ribosomal protein L39 pseudogene 31 pseudogene pseudogene Approved 16q22 16q22 2009-03-06 2009-03-11 100271525 ENSG00000242176 OTTHUMG00000158246 NG_010862 19123937 +HGNC:36959 RPL39P32 ribosomal protein L39 pseudogene 32 pseudogene pseudogene Approved 17q12 17q12 2009-03-06 2009-03-11 100131387 NG_010314 19123937 +HGNC:36315 RPL39P33 ribosomal protein L39 pseudogene 33 pseudogene pseudogene Approved 17q22 17q22 2009-03-06 2009-03-11 100271521 ENSG00000243058 OTTHUMG00000157882 NG_010845 19123937 +HGNC:36528 RPL39P34 ribosomal protein L39 pseudogene 34 pseudogene pseudogene Approved 19q13.41 19q13.41 2009-03-06 2014-03-20 100271523 ENSG00000242255 OTTHUMG00000158225 NG_010853 19123937 +HGNC:35815 RPL39P35 ribosomal protein L39 pseudogene 35 pseudogene pseudogene Approved 19q13.41 19q13.41 2009-03-06 2009-03-11 100271524 NG_010856 19123937 +HGNC:36076 RPL39P36 ribosomal protein L39 pseudogene 36 pseudogene pseudogene Approved 19q13.42 19q13.42 2009-03-06 2016-07-25 100271526 ENSG00000239912 OTTHUMG00000158291 NG_010865 19123937 +HGNC:36282 RPL39P37 ribosomal protein L39 pseudogene 37 pseudogene pseudogene Approved 19q13.41 19q13.41 2009-03-06 2009-03-11 100271528 NG_010875 19123937 +HGNC:36935 RPL39P38 ribosomal protein L39 pseudogene 38 pseudogene pseudogene Approved 19p13.11 19p13.11 2009-03-06 2016-07-25 100271529 ENSG00000241464 OTTHUMG00000158045 NG_010881 19123937 PGOHUM00000294907 +HGNC:36514 RPL39P39 ribosomal protein L39 pseudogene 39 pseudogene pseudogene Approved 20q13.31 20q13.31 2009-03-06 2016-07-25 100271530 ENSG00000231005 OTTHUMG00000032815 NG_010887 19123937 PGOHUM00000297148 +HGNC:35823 RPL39P40 ribosomal protein L39 pseudogene 40 pseudogene pseudogene Approved 21q21.1 21q21.1 2009-03-06 2012-10-16 100271531 ENSG00000226580 OTTHUMG00000074503 NG_010891 19123937 PGOHUM00000261328 +HGNC:35941 RPL39P41 ribosomal protein L39 pseudogene 41 pseudogene pseudogene Approved 22q13.1 22q13.1 2009-03-06 2009-03-11 100271532 NG_010896 19123937 +HGNC:10354 RPL41 ribosomal protein L41 protein-coding gene gene with protein product Approved 12q13 12q13 L41 L ribosomal proteins 729 1993-01-19 2011-04-06 6171 ENSG00000229117 OTTHUMG00000170183 uc001sjo.4 AB007186 NM_021104 CCDS44919 P62945 "1326959|9582194" RGD:621210 RPL41 613315 +HGNC:10356 RPL41P1 ribosomal protein L41 pseudogene 1 pseudogene pseudogene Approved 20p11.22 20p11.22 RPL41L2 ribosomal protein L41-like 2 1999-09-29 2009-03-02 2016-10-05 22971 ENSG00000227063 OTTHUMG00000032033 AL035562 NG_000891 +HGNC:10357 RPL41P2 ribosomal protein L41 pseudogene 2 pseudogene pseudogene Approved 15q11-q13 15q11-q13 1999-09-29 2009-03-02 2012-11-05 22970 ENSG00000256338 OTTHUMG00000186844 NG_000890 +HGNC:10358 RPL41P3 ribosomal protein L41 pseudogene 3 pseudogene pseudogene Approved 22q13.1 22q13.1 1999-09-29 2009-03-02 2009-03-02 22969 NG_000889 +HGNC:19788 RPL41P4 ribosomal protein L41 pseudogene 4 pseudogene pseudogene Approved 14q24.3 14q24.3 2003-01-13 2013-09-23 326308 NG_002560 +HGNC:10355 RPL41P5 ribosomal protein L41 pseudogene 5 pseudogene pseudogene Approved 12q22 12q22 RPL41L ribosomal protein L41-like 1994-02-23 2008-07-22 2008-07-22 2008-07-25 6172 ENSG00000256393 OTTHUMG00000186889 S64030 NG_008264 8332507 +HGNC:37655 RPL41P6 ribosomal protein L41 pseudogene 6 pseudogene pseudogene Approved Yq11.23 Yq11.23 2009-12-16 2011-01-17 286568 NG_004755 +HGNC:37656 RPL41P7 ribosomal protein L41 pseudogene 7 pseudogene pseudogene Approved Yq11.23 Yq11.23 2009-12-16 2010-10-07 286570 NG_004755 +HGNC:10371 RPLP0 ribosomal protein lateral stalk subunit P0 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "PRLP0|P0|L10E|RPP0|LP0" neutral ribosomal phosphoprotein P0 ribosomal protein, large, P0 L ribosomal proteins 729 1993-12-16 2016-03-03 2016-10-05 6175 ENSG00000089157 OTTHUMG00000169317 uc001txq.4 AB007187 NM_053275 CCDS9193 P05388 9582194 MGI:1927636 RGD:621247 RPLP0 180510 +HGNC:10372 RPLP1 ribosomal protein lateral stalk subunit P1 protein-coding gene gene with protein product Approved 15q23 15q23 LP1 ribosomal protein, large, P1 L ribosomal proteins 729 1993-12-16 2016-03-03 2016-03-03 6176 ENSG00000137818 OTTHUMG00000172087 uc002asd.2 NM_001003 "CCDS10233|CCDS10234" P05386 MGI:1927099 RGD:621774 RPLP1 180520 +HGNC:10373 RPLP1L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10374 RPLP1L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10375 RPLP1L3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10376 RPLP1L4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:19793 RPLP1P1 ribosomal protein lateral stalk subunit P1 pseudogene 1 pseudogene pseudogene Approved 14q24.3 14q24.3 ribosomal protein, large, P1 pseudogene 1 2009-03-01 2016-03-03 2016-03-03 145499 NG_002526 19123937 +HGNC:36210 RPLP1P2 ribosomal protein lateral stalk subunit P1 pseudogene 2 pseudogene pseudogene Approved 1q43 01q43 ribosomal protein, large, P1 pseudogene 2 2009-03-06 2016-03-03 2016-03-03 729138 NG_006638 19123937 +HGNC:36870 RPLP1P3 ribosomal protein lateral stalk subunit P1 pseudogene 3 pseudogene pseudogene Approved 1q24.3 01q24.3 ribosomal protein, large, P1 pseudogene 3 2009-03-06 2016-03-03 2016-03-03 127099 NG_010637 19123937 RPLP1P3 +HGNC:36939 RPLP1P4 ribosomal protein lateral stalk subunit P1 pseudogene 4 pseudogene pseudogene Approved 2q31.1 02q31.1 ribosomal protein, large, P1 pseudogene 4 2009-03-06 2016-03-03 2016-03-03 100129028 NG_009587 19123937 +HGNC:35842 RPLP1P5 ribosomal protein lateral stalk subunit P1 pseudogene 5 pseudogene pseudogene Approved 2p24.3 02p24.3 ribosomal protein, large, P1 pseudogene 5 2009-03-06 2016-03-03 2016-03-03 130678 NG_010614 19123937 +HGNC:35809 RPLP1P6 ribosomal protein lateral stalk subunit P1 pseudogene 6 pseudogene pseudogene Approved 5q33.1 05q33.1 ribosomal protein, large, P1 pseudogene 6 2009-03-06 2016-03-03 2016-03-03 729416 ENSG00000213433 OTTHUMG00000157909 NG_005982 19123937 +HGNC:36156 RPLP1P7 ribosomal protein lateral stalk subunit P1 pseudogene 7 pseudogene pseudogene Approved 5q23.2 05q23.2 ribosomal protein, large, P1 pseudogene 7 2009-03-06 2016-03-03 2016-03-03 133609 NG_006940 19123937 +HGNC:36104 RPLP1P8 ribosomal protein lateral stalk subunit P1 pseudogene 8 pseudogene pseudogene Approved 6q23.3 06q23.3 ribosomal protein, large, P1 pseudogene 8 2009-03-06 2016-03-03 2016-03-03 100128745 NG_011205 19123937 +HGNC:36069 RPLP1P9 ribosomal protein lateral stalk subunit P1 pseudogene 9 pseudogene pseudogene Approved 8p21-p11.2 08p21-p11.2 ribosomal protein, large, P1 pseudogene 9 2009-03-06 2016-03-03 2016-03-03 100271049 NG_011038 19123937 +HGNC:35509 RPLP1P10 ribosomal protein lateral stalk subunit P1 pseudogene 10 pseudogene pseudogene Approved 10q21.1 10q21.1 ribosomal protein, large, P1 pseudogene 10 2009-03-06 2016-03-03 2016-08-17 100271346 ENSG00000226888 OTTHUMG00000018275 NG_011249 19123937 PGOHUM00000289870 +HGNC:36196 RPLP1P11 ribosomal protein lateral stalk subunit P1 pseudogene 11 pseudogene pseudogene Approved 17p12 17p12 ribosomal protein, large, P1 pseudogene 11 2009-03-06 2016-03-03 2016-03-03 100131087 ENSG00000243686 OTTHUMG00000059307 NG_010056 19123937 +HGNC:36858 RPLP1P12 ribosomal protein lateral stalk subunit P1 pseudogene 12 pseudogene pseudogene Approved 19q13.41 19q13.41 ribosomal protein, large, P1 pseudogene 12 2009-03-06 2016-03-03 2016-03-03 646566 NG_010867 19123937 +HGNC:41973 RPLP1P13 ribosomal protein lateral stalk subunit P1 pseudogene 13 pseudogene pseudogene Approved 13q12.12 13q12.12 ribosomal protein, large, P1 pseudogene 13 2011-05-24 2016-03-03 2016-03-03 100874124 ENSG00000232163 OTTHUMG00000016564 NG_032385 +HGNC:10377 RPLP2 ribosomal protein lateral stalk subunit P2 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "P2|RPP2|MGC71408|LP2" "60S acidic ribosomal protein P2|acidic ribosomal phosphoprotein P2" D11S2243E ribosomal protein, large, P2 L ribosomal proteins 729 1993-12-16 2016-03-03 2016-03-03 6181 ENSG00000177600 OTTHUMG00000133317 uc001lrq.2 M17887 NM_001004 CCDS7717 P05387 3323886 MGI:1914436 RGD:621775 RPLP2 180530 +HGNC:18724 RPLP2P1 ribosomal protein lateral stalk subunit P2 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 dJ408B20.3 ribosomal protein, large P2, pseudogene 1 2009-03-01 2016-03-03 2016-03-03 442175 ENSG00000214374 OTTHUMG00000014498 NG_010333 19123937 +HGNC:36590 RPLP2P2 ribosomal protein lateral stalk subunit P2 pseudogene 2 pseudogene pseudogene Approved 5q33.3 05q33.3 ribosomal protein, large, P2 pseudogene 2 2009-03-06 2016-03-03 2016-03-03 644198 NG_010527 19123937 +HGNC:36494 RPLP2P3 ribosomal protein lateral stalk subunit P2 pseudogene 3 pseudogene pseudogene Approved 11q22.3 11q22.3 ribosomal protein, large, P2 pseudogene 3 2009-03-06 2016-03-03 2016-03-03 643949 NG_010565 19123937 +HGNC:36837 RPLP2P4 ribosomal protein lateral stalk subunit P2 pseudogene 4 pseudogene pseudogene Approved 12p11.21 12p11.21 ribosomal protein, large, P2 pseudogene 4 2009-03-06 2016-03-03 2016-03-03 100271347 NG_011258 19123937 +HGNC:35706 RPLP2P5 ribosomal protein lateral stalk subunit P2 pseudogene 5 pseudogene pseudogene Approved 17q23.2 17q23.2 ribosomal protein, large, P2 pseudogene 5 2009-03-06 2016-03-03 2016-03-03 100271348 NG_011348 19123937 +HGNC:16585 RPLP0P1 ribosomal protein lateral stalk subunit P0 pseudogene 1 pseudogene pseudogene Approved 20p12.1 20p12.1 dJ777L9.2 ribosomal protein, large, P0 pseudogene 1 2001-09-17 2016-03-03 2016-07-25 128745 ENSG00000226229 OTTHUMG00000031929 AL049794 NG_000973 PGOHUM00000296906 +HGNC:17960 RPLP0P2 ribosomal protein lateral stalk subunit P0 pseudogene 2 pseudogene pseudogene Approved 11q12.2 11q12.2 ribosomal protein, large, P0 pseudogene 2 2009-03-01 2016-03-03 2016-03-03 113157 ENSG00000243742 OTTHUMG00000158396 BC010523 NR_002775 "19123937|25089627" +HGNC:23558 RPLP0P3 ribosomal protein lateral stalk subunit P0 pseudogene 3 pseudogene pseudogene Approved 14q13.2 14q13.2 ribosomal protein, large, P0 pseudogene 3 2009-03-01 2016-03-03 2016-03-03 122589 AL133163 NG_009485 19123937 +HGNC:36489 RPLP0P4 ribosomal protein lateral stalk subunit P0 pseudogene 4 pseudogene pseudogene Approved 1q21.3 01q21.3 ribosomal protein, large, P0 pseudogene 4 2009-03-06 2016-03-03 2016-03-03 391102 NG_010984 19123937 +HGNC:35620 RPLP0P5 ribosomal protein lateral stalk subunit P0 pseudogene 5 pseudogene pseudogene Approved 1q41 01q41 ribosomal protein, large, P0 pseudogene 5 2009-03-06 2016-03-03 2016-03-03 643779 NG_011009 19123937 +HGNC:36404 RPLP0P6 ribosomal protein lateral stalk subunit P0 pseudogene 6 pseudogene pseudogene Approved 2p22.1 02p22.1 ribosomal protein, large, P0 pseudogene 6 2009-03-06 2016-03-03 2016-03-03 220717 ENSG00000213553 OTTHUMG00000153430 NG_009952 Q8NHW5 19123937 RGD:1564469 +HGNC:36578 RPLP0P7 ribosomal protein lateral stalk subunit P0 pseudogene 7 pseudogene pseudogene Approved 2q24.1 02q24.1 ribosomal protein, large, P0 pseudogene 7 2009-03-06 2016-03-03 2016-03-03 100271047 ENSG00000238069 OTTHUMG00000153844 NG_011029 19123937 PGOHUM00000240397 +HGNC:35867 RPLP0P8 ribosomal protein lateral stalk subunit P0 pseudogene 8 pseudogene pseudogene Approved 3p14.1 03p14.1 ribosomal protein, large, P0 pseudogene 8 2009-03-06 2016-03-03 2016-03-03 100131151 NG_010425 19123937 +HGNC:35991 RPLP0P10 ribosomal protein lateral stalk subunit P0 pseudogene 10 pseudogene pseudogene Approved 15q15.1 15q15.1 ribosomal protein, large, P0 pseudogene 10 2009-03-06 2016-03-03 2016-03-03 390578 NG_010925 19123937 +HGNC:36572 RPLP0P11 ribosomal protein lateral stalk subunit P0 pseudogene 11 pseudogene pseudogene Approved 18q21.1 18q21.1 ribosomal protein, large, P0 pseudogene 11 2009-03-06 2016-03-03 2016-03-03 647094 ENSG00000239780 OTTHUMG00000158245 NG_010949 19123937 +HGNC:10381 RPN1 ribophorin I protein-coding gene gene with protein product Approved 3q21.3 03q21.3 OST1 "oligosaccharyltransferase 1 homolog (S. cerevisiae)|oligosaccharyltransferase complex subunit (non-catalytic)" Oligosaccharyltransferase complex subunits 445 2001-06-22 2013-03-06 6184 ENSG00000163902 OTTHUMG00000159691 uc003ekr.2 NM_002950 CCDS3051 P04843 MGI:98084 RGD:3594 RPN1 180470 409866 +HGNC:10382 RPN2 ribophorin II protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "SWP1|RPNII|RIBIIR|RPN-II" oligosaccharyltransferase complex subunit (non-catalytic) Oligosaccharyltransferase complex subunits 445 2001-06-22 2016-10-05 6185 ENSG00000118705 OTTHUMG00000032409 uc002xgp.4 Y00282 NM_002951 "CCDS13291|CCDS46599" P04844 MGI:98085 RGD:62075 RPN2 180490 +HGNC:30327 RPP14 ribonuclease P/MRP subunit p14 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 P14 "ribonuclease P 14kDa subunit|ribonuclease P/MRP 14kDa subunit" 2004-03-17 2016-04-05 2016-10-05 11102 ENSG00000163684 OTTHUMG00000159152 uc010hnh.4 AF001175 NM_007042 CCDS2888 "O95059|P86397" "10024167|11929972" MGI:1914303 RGD:1305436 RPP14 606112 +HGNC:21300 RPP21 ribonuclease P/MRP subunit p21 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "FLJ22638|Em:AB014085.3" C6orf135 "chromosome 6 open reading frame 135|ribonuclease P 21kDa subunit|ribonuclease P/MRP 21kDa subunit" 2003-06-02 2004-03-19 2016-04-05 2016-10-05 79897 ENSG00000241370 OTTHUMG00000031220 uc021zot.2 AK026291 NM_024839 "CCDS4679|CCDS56409|CCDS56410" Q9H633 MGI:1914926 RGD:1303090 RPP21 612524 +HGNC:30361 RPP25 ribonuclease P/MRP subunit p25 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 FLJ20374 RNase P protein subunit p25 "ribonuclease P 25kDa subunit|ribonuclease P/MRP 25kDa subunit" 2004-03-17 2016-04-05 2016-04-05 54913 ENSG00000178718 OTTHUMG00000142822 uc002azj.2 AY034074 NM_017793 CCDS10274 Q9BUL9 12003489 MGI:2143151 RGD:1305290 RPP25 +HGNC:19909 RPP25L ribonuclease P/MRP subunit p25 like protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "bA296L22.5|MGC29635" C9orf23 "chromosome 9 open reading frame 23|ribonuclease P/MRP 25kDa subunit-like" 2002-12-03 2012-03-06 2016-04-05 2016-10-05 138716 ENSG00000164967 OTTHUMG00000000443 uc003zuv.4 BC032136 NM_148179 CCDS6559 Q8N5L8 16998185 MGI:1917211 RGD:1306576 +HGNC:17688 RPP30 ribonuclease P/MRP subunit p30 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 TSG15 ribonuclease P protein subunit p30 ribonuclease P/MRP 30kDa subunit 2004-03-17 2016-04-05 2016-10-05 10556 ENSG00000148688 OTTHUMG00000018733 uc009xtx.4 BC006991 NM_006413 "CCDS7411|CCDS44458" P78346 "9037013|9308968" MGI:1859683 RGD:1595116 RPP30 606115 +HGNC:30329 RPP38 ribonuclease P/MRP subunit p38 protein-coding gene gene with protein product Approved 10p13 10p13 ribonuclease P/MRP 38kDa subunit 2004-03-17 2016-04-05 2016-04-05 10557 ENSG00000152464 OTTHUMG00000017728 uc031pth.2 U77664 NM_006414 CCDS7108 P78345 "9037013|9630247" MGI:2443607 RGD:1307474 RPP38 606116 +HGNC:20992 RPP40 ribonuclease P/MRP subunit p40 protein-coding gene gene with protein product Approved 6p25.1 06p25.1 bA428J1.3 RNASEP1 "ribonuclease P1|ribonuclease P 40kDa subunit|ribonuclease P/MRP 40kDa subunit" 2003-04-30 2004-03-19 2016-04-05 2016-04-05 10799 ENSG00000124787 OTTHUMG00000014168 uc003mwl.5 U94317 NM_006638 "CCDS34333|CCDS69040|CCDS75391" O75818 9630247 MGI:1346084 RGD:1310228 RPP40 606117 +HGNC:39769 RPP40P1 ribonuclease P/MRP subunit p40 pseudogene 1 pseudogene pseudogene Approved Xp21.3 Xp21.3 ribonuclease P/MRP 40kDa subunit pseudogene 1 2011-03-29 2016-04-05 2016-04-05 100874225 ENSG00000229310 OTTHUMG00000021279 NG_032356 PGOHUM00000241214 +HGNC:39770 RPP40P2 ribonuclease P/MRP subunit p40 pseudogene 2 pseudogene pseudogene Approved 13q21.2 13q21.2 ribonuclease P/MRP 40kDa subunit pseudogene 2 2011-03-29 2016-04-05 2016-04-05 100420608 ENSG00000271190 OTTHUMG00000184864 NG_024931 PGOHUM00000258725 +HGNC:19273 RPPH1 ribonuclease P RNA component H1 non-coding RNA RNA, misc Approved 14q11.2 14q11.2 "H1RNA|RPPH1-1" 2004-03-17 2015-01-30 85495 ENSG00000277209 OTTHUMG00000170789 uc001vxa.2 X15624 NR_002312 "7916700|2470644" MGI:1934664 608513 +HGNC:47029 RPPH1-2P ribonuclease P RNA component H1, 2 pseudogene pseudogene pseudogene Approved 14q23.3 14q23.3 2013-04-03 2013-04-03 106481202 ENSG00000252497 uc021ruo.1 NG_043330 +HGNC:47030 RPPH1-3P ribonuclease P RNA component H1, 3 pseudogene pseudogene pseudogene Approved 4q32.1 04q32.1 2013-04-03 2013-04-03 106479602 ENSG00000252350 uc063ant.1 NG_044828 +HGNC:25560 RPRD1A regulation of nuclear pre-mRNA domain containing 1A protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "P15RS|FLJ10656|HsT3101" "cyclin-dependent kinase 2B-inhibitor-related protein|Cyclin-dependent kinase inhibitor 2B-related protein (p15INK4B-related protein)" 2008-07-28 2008-08-15 2014-11-19 55197 ENSG00000141425 OTTHUMG00000132591 uc002kzg.4 AF419845 NM_018170 "CCDS11917|CCDS77178" Q96P16 "12470661|22231121" MGI:2385066 RGD:1307374 RPRD1A 610347 +HGNC:16209 RPRD1B regulation of nuclear pre-mRNA domain containing 1B protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "dJ1057B20.2|DKFZp434P0735|CREPT|FLJ44520|NET60" cell-cycle related and expression-elevated protein in tumor C20orf77 chromosome 20 open reading frame 77 2001-07-17 2008-07-28 2008-08-15 2015-01-27 58490 ENSG00000101413 OTTHUMG00000032434 uc002xho.5 AL109823 NM_021215 CCDS13301 Q9NQG5 22231121 MGI:1917720 RGD:1304782 RPRD1B 614694 +HGNC:29039 RPRD2 regulation of nuclear pre-mRNA domain containing 2 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "FLJ32145|HSPC099" KIAA0460 KIAA0460 2005-05-17 2008-07-28 2008-08-15 2014-11-19 23248 ENSG00000163125 OTTHUMG00000012808 uc009wlr.4 BX641025 NM_015203 "CCDS44216|CCDS72907" Q5VT52 22231121 MGI:1922387 RGD:2320792 RPRD2 614695 +HGNC:24201 RPRM reprimo, TP53 dependent G2 arrest mediator candidate protein-coding gene gene with protein product Approved 2q23.3 02q23.3 "FLJ90327|REPRIMO" "candidate mediator of the p53 dependent G2 arrest|REPRIMO" reprimo, TP53 dependant G2 arrest mediator candidate 2004-08-05 2005-12-01 2016-10-05 56475 ENSG00000177519 OTTHUMG00000131905 uc002tyq.1 AK074808 NM_019845 CCDS2198 Q9NS64 10930422 MGI:1915124 RGD:1595512 RPRM 612171 +HGNC:32422 RPRML reprimo like protein-coding gene gene with protein product Approved 17q21.32 17q21.32 MGC43894 reprimo-like 2005-12-15 2016-04-01 2016-04-01 388394 ENSG00000179673 OTTHUMG00000178187 uc002ilb.3 BC033942 NM_203400 CCDS11508 Q8N4K4 MGI:2144486 RGD:1589060 RPRML +HGNC:10403 RPS1L entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10404 RPS2 ribosomal protein S2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "LLREP3|S2" S ribosomal proteins 728 1998-07-29 2015-09-09 6187 ENSG00000140988 OTTHUMG00000128708 uc002cno.3 AB007147 NM_002952 CCDS10452 P15880 9582194 MGI:105110 RGD:619887 RPS2 603624 +HGNC:16580 RPS2P1 ribosomal protein S2 pseudogene 1 pseudogene pseudogene Approved 20q11.22 20q11.22 dJ64K7.1 2009-03-01 2016-07-22 140755 ENSG00000225246 OTTHUMG00000032286 NG_000998 19123937 PGOHUM00000297109 +HGNC:19790 RPS2P2 ribosomal protein S2 pseudogene 2 pseudogene pseudogene Approved 14q24.3 14q24.3 2009-03-01 2014-11-19 326325 ENSG00000177776 OTTHUMG00000157990 NG_002575 19123937 +HGNC:19806 RPS2P3 ribosomal protein S2 pseudogene 3 pseudogene pseudogene Approved 14q32.2 14q32.2 2009-03-01 2014-11-19 326326 NG_002576 19123937 +HGNC:19814 RPS2P4 ribosomal protein S2 pseudogene 4 pseudogene pseudogene Approved 14q32.33 14q32.33 2009-03-01 2014-11-19 92427 ENSG00000196183 OTTHUMG00000158156 NG_002522 19123937 +HGNC:31386 RPS2P5 ribosomal protein S2 pseudogene 5 pseudogene pseudogene Approved 12q24.23 12q24.23 bcm384 2009-03-01 2014-11-18 100130562 ENSG00000240342 OTTHUMG00000157753 AC026366 NG_009505 19123937 +HGNC:25485 RPS2P6 ribosomal protein S2 pseudogene 6 pseudogene pseudogene Approved 18q22.2 18q22.2 2009-03-01 2014-11-19 342808 ENSG00000214255 OTTHUMG00000158263 NG_005666 19123937 +HGNC:15838 RPS2P7 ribosomal protein S2 pseudogene 7 pseudogene pseudogene Approved 20q13.12 20q13.12 dJ688G8.1 RPS2L1 ribosomal protein S2-like 1 2009-03-01 2009-01-23 2009-01-23 2014-11-19 86781 ENSG00000235508 OTTHUMG00000032603 NG_000946 19123937 +HGNC:36207 RPS2P8 ribosomal protein S2 pseudogene 8 pseudogene pseudogene Approved 1p32.3 01p32.3 2009-03-06 2009-03-11 440589 NG_010039 19123937 +HGNC:36704 RPS2P9 ribosomal protein S2 pseudogene 9 pseudogene pseudogene Approved 1q31.3 01q31.3 2009-03-06 2009-03-11 100131866 NG_010131 19123937 +HGNC:36892 RPS2P10 ribosomal protein S2 pseudogene 10 pseudogene pseudogene Approved 1q24.1 01q24.1 2009-03-06 2009-03-11 401974 NG_010287 19123937 +HGNC:36350 RPS2P11 ribosomal protein S2 pseudogene 11 pseudogene pseudogene Approved 1p33 01p33 2009-03-06 2009-03-11 343184 NG_010755 19123937 +HGNC:36546 RPS2P12 ribosomal protein S2 pseudogene 12 pseudogene pseudogene Approved 1p34.2 01p34.2 2009-03-06 2009-03-11 650901 NG_010789 19123937 +HGNC:36021 RPS2P13 ribosomal protein S2 pseudogene 13 pseudogene pseudogene Approved 1p33 01p33 2009-03-06 2009-03-11 100270826 NG_011208 19123937 +HGNC:36389 RPS2P14 ribosomal protein S2 pseudogene 14 pseudogene pseudogene Approved 1p13 01p13 2009-03-06 2009-03-11 100270827 NG_011213 19123937 +HGNC:36468 RPS2P15 ribosomal protein S2 pseudogene 15 pseudogene pseudogene Approved 2p23 02p23 2009-03-06 2009-03-11 100270858 NG_010017 19123937 +HGNC:36865 RPS2P16 ribosomal protein S2 pseudogene 16 pseudogene pseudogene Approved 2q33.1 02q33.1 2009-03-06 2009-03-11 100270860 NG_010029 19123937 +HGNC:35764 RPS2P17 ribosomal protein S2 pseudogene 17 pseudogene pseudogene Approved 2p11.2 02p11.2 2009-03-06 2009-03-11 400963 NG_010359 19123937 +HGNC:36449 RPS2P18 ribosomal protein S2 pseudogene 18 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2009-03-11 643960 NG_010622 19123937 +HGNC:35786 RPS2P19 ribosomal protein S2 pseudogene 19 pseudogene pseudogene Approved 3q25.33 03q25.33 2009-03-06 2009-03-11 100270859 NG_010021 19123937 +HGNC:35992 RPS2P20 ribosomal protein S2 pseudogene 20 pseudogene pseudogene Approved 4q31.21 04q31.21 2009-03-06 2009-03-11 645018 NG_010814 19123937 +HGNC:35591 RPS2P21 ribosomal protein S2 pseudogene 21 pseudogene pseudogene Approved 4p13 04p13 2009-03-06 2009-03-11 441013 NG_010939 19123937 +HGNC:35506 RPS2P22 ribosomal protein S2 pseudogene 22 pseudogene pseudogene Approved 5p12 05p12 2009-03-06 2009-03-11 100270861 NG_010034 19123937 +HGNC:35760 RPS2P23 ribosomal protein S2 pseudogene 23 pseudogene pseudogene Approved 5q12 05q12 2009-03-06 2009-03-11 100270910 NG_010324 19123937 +HGNC:35887 RPS2P24 ribosomal protein S2 pseudogene 24 pseudogene pseudogene Approved 5q14.1 05q14.1 2009-03-06 2009-03-11 100270912 ENSG00000244019 OTTHUMG00000157756 NG_010336 19123937 +HGNC:36410 RPS2P25 ribosomal protein S2 pseudogene 25 pseudogene pseudogene Approved 5q14.3 05q14.3 2009-03-06 2013-09-23 100270913 ENSG00000241965 OTTHUMG00000157796 NG_010344 19123937 PGOHUM00000251383 +HGNC:36157 RPS2P26 ribosomal protein S2 pseudogene 26 pseudogene pseudogene Approved 5q22.3 05q22.3 2009-03-06 2009-03-11 643992 NG_010802 19123937 +HGNC:36876 RPS2P27 ribosomal protein S2 pseudogene 27 pseudogene pseudogene Approved 4q28.3 04q28.3 2009-03-06 2009-03-11 440447 NG_011372 19123937 +HGNC:35780 RPS2P28 ribosomal protein S2 pseudogene 28 pseudogene pseudogene Approved 6p21.1 06p21.1 2009-03-06 2013-09-19 100132673 ENSG00000179157 OTTHUMG00000014730 NG_010349 19123937 PGOHUM00000243627 +HGNC:36011 RPS2P29 ribosomal protein S2 pseudogene 29 pseudogene pseudogene Approved 6p21.1 06p21.1 2009-03-06 2009-03-11 646294 NG_010793 19123937 +HGNC:36987 RPS2P30 ribosomal protein S2 pseudogene 30 pseudogene pseudogene Approved 7p15.1 07p15.1 2009-03-06 2009-03-11 100270911 NG_010330 19123937 +HGNC:36965 RPS2P31 ribosomal protein S2 pseudogene 31 pseudogene pseudogene Approved 7q31.33 07q31.33 2009-03-06 2009-03-11 392781 NG_006979 19123937 +HGNC:30518 RPS2P32 ribosomal protein S2 pseudogene 32 pseudogene pseudogene Approved 7p15.3 07p15.3 MGC27348 2009-03-12 2014-11-19 256355 ENSG00000232818 OTTHUMG00000152681 NG_005656 19123937 PGOHUM00000233150 +HGNC:35549 RPS2P33 ribosomal protein S2 pseudogene 33 pseudogene pseudogene Approved 8q22.1 08q22.1 2009-03-06 2009-03-11 286150 NG_011027 19123937 +HGNC:36370 RPS2P34 ribosomal protein S2 pseudogene 34 pseudogene pseudogene Approved 9q21.32 09q21.32 2009-03-06 2009-03-11 442426 NG_010308 19123937 +HGNC:36757 RPS2P35 ribosomal protein S2 pseudogene 35 pseudogene pseudogene Approved 9q31.1 09q31.1 2009-03-06 2009-03-11 100130980 ENSG00000238172 OTTHUMG00000020361 NG_010860 19123937 +HGNC:36784 RPS2P36 ribosomal protein S2 pseudogene 36 pseudogene pseudogene Approved 10q24.1 10q24.1 2009-03-06 2016-08-16 100271243 ENSG00000227032 OTTHUMG00000018836 NG_010724 19123937 PGOHUM00000289968 +HGNC:36482 RPS2P37 ribosomal protein S2 pseudogene 37 pseudogene pseudogene Approved 11q12.3 11q12.3 2009-03-06 2009-03-11 390206 NG_010329 19123937 +HGNC:36584 RPS2P38 ribosomal protein S2 pseudogene 38 pseudogene pseudogene Approved 11p14.3 11p14.3 2009-03-06 2009-03-11 196188 NG_010483 19123937 +HGNC:36131 RPS2P39 ribosomal protein S2 pseudogene 39 pseudogene pseudogene Approved 11q22.3 11q22.3 2009-03-06 2009-03-11 100271244 ENSG00000240698 OTTHUMG00000158452 NG_010729 19123937 +HGNC:35541 RPS2P40 ribosomal protein S2 pseudogene 40 pseudogene pseudogene Approved 11p15.1 11p15.1 2009-03-06 2009-03-11 91561 NG_005977 19123937 +HGNC:36357 RPS2P41 ribosomal protein S2 pseudogene 41 pseudogene pseudogene Approved 12q24.2 12q24.2 2009-03-06 2009-03-11 100271245 ENSG00000244060 OTTHUMG00000157736 NG_010735 19123937 +HGNC:36481 RPS2P42 ribosomal protein S2 pseudogene 42 pseudogene pseudogene Approved 12p13.3-p13.2 12p13.3-p13.2 2009-03-06 2009-03-11 100271247 NG_010746 19123937 +HGNC:35652 RPS2P43 ribosomal protein S2 pseudogene 43 pseudogene pseudogene Approved 14q24 14q24 2009-03-06 2009-03-11 100271246 NG_010741 19123937 +HGNC:35811 RPS2P44 ribosomal protein S2 pseudogene 44 pseudogene pseudogene Approved 16q12.1 16q12.1 2009-03-06 2009-03-11 100271248 ENSG00000243609 OTTHUMG00000175442 NG_010753 19123937 +HGNC:25709 RPS2P45 ribosomal protein S2 pseudogene 45 pseudogene pseudogene Approved 16q22.1 16q22.1 FLJ12331 2009-03-12 2014-11-18 80052 ENSG00000244378 OTTHUMG00000158195 NG_006666 19123937 +HGNC:35839 RPS2P46 ribosomal protein S2 pseudogene 46 pseudogene pseudogene Approved 17p11 17p11 2009-03-06 2009-03-11 125208 ENSG00000189343 OTTHUMG00000178199 NG_002360 19123937 +HGNC:35785 RPS2P47 ribosomal protein S2 pseudogene 47 pseudogene pseudogene Approved 17q21.32 17q21.32 2009-03-06 2009-03-11 644388 NG_011344 19123937 +HGNC:35985 RPS2P48 ribosomal protein S2 pseudogene 48 pseudogene pseudogene Approved 17q22 17q22 2009-03-06 2009-03-11 645173 ENSG00000233380 OTTHUMG00000132351 NG_010280 19123937 +HGNC:36521 RPS2P49 ribosomal protein S2 pseudogene 49 pseudogene pseudogene Approved 17q21 17q21 2009-03-06 2009-03-11 100271251 NG_010770 19123937 +HGNC:36034 RPS2P50 ribosomal protein S2 pseudogene 50 pseudogene pseudogene Approved 17q12 17q12 2009-03-06 2009-03-11 729842 NG_011388 19123937 +HGNC:36422 RPS2P51 ribosomal protein S2 pseudogene 51 pseudogene pseudogene Approved 19p13.11 19p13.11 2009-03-06 2009-03-11 729679 NG_010424 19123937 +HGNC:36059 RPS2P52 ribosomal protein S2 pseudogene 52 pseudogene pseudogene Approved 19p13.3 19p13.3 2009-03-06 2016-10-05 100271250 ENSG00000213726 OTTHUMG00000157965 NG_010764 19123937 PGOHUM00000295162 +HGNC:36690 RPS2P53 ribosomal protein S2 pseudogene 53 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2009-03-11 729274 NG_010961 19123937 +HGNC:35835 RPS2P54 ribosomal protein S2 pseudogene 54 pseudogene pseudogene Approved 20q13.1 20q13.1 2009-03-06 2009-03-11 100271252 NG_010778 19123937 +HGNC:36140 RPS2P55 ribosomal protein S2 pseudogene 55 pseudogene pseudogene Approved Xp11.4 Xp11.4 2009-03-06 2011-09-20 286444 ENSG00000216866 OTTHUMG00000024112 NG_011221 19123937 RPS2P55 PGOHUM00000241246 +HGNC:10420 RPS3 ribosomal protein S3 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 "FLJ26283|FLJ27450|MGC87870|S3" "IMR-90 ribosomal protein S3|40S ribosomal protein S3" S ribosomal proteins 728 1994-12-02 2016-01-15 6188 ENSG00000149273 OTTHUMG00000165448 uc031qcu.2 NM_001005 "CCDS8236|CCDS58161" P23396 "1712897|7789996" MGI:1350917 RGD:619888 RPS3 600454 +HGNC:10421 RPS3A ribosomal protein S3A protein-coding gene gene with protein product Approved 4q31.3 04q31.3 S3A MFTL S ribosomal proteins 728 1992-09-17 2016-10-05 6189 ENSG00000145425 OTTHUMG00000161445 uc003ilz.4 X87373 NM_001006 CCDS3775 P61247 "8647443|1398113" MGI:1202063 RGD:62078 RPS3A 180478 +HGNC:10422 RPS3AP1 ribosomal protein S3A pseudogene 1 pseudogene pseudogene Approved 21q21.1 21q21.1 RPS3AP ribosomal protein S3A pseudogene 2000-05-23 2001-12-14 2001-12-07 2013-02-11 101241875 ENSG00000233206 OTTHUMG00000078061 NG_000904 PGOHUM00000239046 +HGNC:14196 RPS3AP2 ribosomal protein S3A pseudogene 2 pseudogene pseudogene Approved 16p13.3 16p13.3 2009-03-01 2014-11-19 64725 ENSG00000219027 OTTHUMG00000044469 AL031705 NG_009483 19123937 +HGNC:16537 RPS3AP3 ribosomal protein S3A pseudogene 3 pseudogene pseudogene Approved 20q11.23 20q11.23 bA332A4.2 2001-09-17 2016-07-22 140713 ENSG00000231241 OTTHUMG00000032403 NG_000984 PGOHUM00000296988 +HGNC:23562 RPS3AP4 ribosomal protein S3A pseudogene 4 pseudogene pseudogene Approved 14q13.2 14q13.2 2005-12-22 2012-11-12 100132142 ENSG00000259105 OTTHUMG00000171065 AL160231 NG_009833 PGOHUM00000248134 +HGNC:23744 RPS3AP5 ribosomal protein S3A pseudogene 5 pseudogene pseudogene Approved 10q23.1 10q23.1 bA486O22.3 2009-03-01 2016-08-17 439992 ENSG00000178429 OTTHUMG00000018642 NG_009792 19123937 PGOHUM00000290226 +HGNC:18630 RPS3AP6 ribosomal protein S3A pseudogene 6 pseudogene pseudogene Approved 15q22.2 15q22.2 2009-03-01 2016-10-05 145767 ENSG00000234797 OTTHUMG00000157954 NG_004861 19123937 RPS3AP6 +HGNC:36376 RPS3AP7 ribosomal protein S3a pseudogene 7 pseudogene pseudogene Approved 1q42.12 01q42.12 2009-03-06 2009-03-11 391168 NG_009958 19123937 +HGNC:35638 RPS3AP8 ribosomal protein S3a pseudogene 8 pseudogene pseudogene Approved 1q25 01q25 2009-03-06 2009-03-11 100271127 NG_010108 19123937 +HGNC:36150 RPS3AP9 ribosomal protein S3a pseudogene 9 pseudogene pseudogene Approved 1q31.1 01q31.1 2009-03-06 2013-09-23 100271129 ENSG00000231022 OTTHUMG00000035541 NG_010121 19123937 PGOHUM00000245129 +HGNC:36036 RPS3AP10 ribosomal protein S3a pseudogene 10 pseudogene pseudogene Approved 1q24.1 01q24.1 2009-03-06 2009-03-11 401975 NG_010293 19123937 +HGNC:36825 RPS3AP11 ribosomal protein S3a pseudogene 11 pseudogene pseudogene Approved 1p34.2 01p34.2 2009-03-06 2009-03-11 100270904 NG_010295 19123937 +HGNC:35527 RPS3AP12 ribosomal protein S3a pseudogene 12 pseudogene pseudogene Approved 1p12 01p12 2009-03-06 2016-10-05 100270905 ENSG00000236804 OTTHUMG00000012339 NG_010299 19123937 PGOHUM00000244163 +HGNC:35715 RPS3AP14 ribosomal protein S3a pseudogene 14 pseudogene pseudogene Approved 3q21.2 03q21.2 2009-03-06 2012-11-12 729150 ENSG00000242229 OTTHUMG00000157370 NG_010327 19123937 PGOHUM00000238166 +HGNC:35781 RPS3AP15 ribosomal protein S3a pseudogene 15 pseudogene pseudogene Approved 3p12.3 03p12.3 2009-03-06 2012-11-12 652670 ENSG00000244674 OTTHUMG00000157316 NG_010655 19123937 PGOHUM00000237660 +HGNC:36052 RPS3AP16 ribosomal protein S3a pseudogene 16 pseudogene pseudogene Approved 4p16.3 04p16.3 2009-03-06 2009-03-11 727951 NG_010748 19123937 +HGNC:36083 RPS3AP17 ribosomal protein S3a pseudogene 17 pseudogene pseudogene Approved 4p15.1 04p15.1 2009-03-06 2013-09-23 100271130 ENSG00000244031 OTTHUMG00000157446 NG_010127 19123937 PGOHUM00000250703 +HGNC:35893 RPS3AP18 ribosomal protein S3a pseudogene 18 pseudogene pseudogene Approved 4q31.3 04q31.3 2009-03-06 2009-03-11 391706 NG_010134 19123937 +HGNC:36467 RPS3AP19 ribosomal protein S3a pseudogene 19 pseudogene pseudogene Approved 4p16.1 04p16.1 2009-03-06 2009-03-11 728700 NG_009562 19123937 +HGNC:36141 RPS3AP20 ribosomal protein S3a pseudogene 20 pseudogene pseudogene Approved 5q14.1 05q14.1 2009-03-06 2009-03-11 643932 NG_010482 19123937 +HGNC:36841 RPS3AP21 ribosomal protein S3a pseudogene 21 pseudogene pseudogene Approved 5q22.1 05q22.1 2009-03-06 2009-03-11 402287 "NG_006521|NG_005352" 19123937 +HGNC:36573 RPS3AP22 ribosomal protein S3a pseudogene 22 pseudogene pseudogene Approved 5q14.3 05q14.3 2009-03-06 2012-03-26 100130786 ENSG00000240083 OTTHUMG00000157798 NG_011168 19123937 PGOHUM00000251385 +HGNC:36767 RPS3AP23 ribosomal protein S3a pseudogene 23 pseudogene pseudogene Approved 6q24.1 06q24.1 2009-03-06 2013-09-23 100271131 ENSG00000218351 OTTHUMG00000015703 NG_010136 19123937 PGOHUM00000243401 +HGNC:36267 RPS3AP24 ribosomal protein S3a pseudogene 24 pseudogene pseudogene Approved 6q24.1 06q24.1 2009-03-06 2013-09-23 100271253 ENSG00000217684 OTTHUMG00000015701 NG_010784 19123937 PGOHUM00000260190 +HGNC:36801 RPS3AP25 ribosomal protein S3a pseudogene 25 pseudogene pseudogene Approved 7q21.3 07q21.3 2009-03-06 2012-11-12 645968 ENSG00000232385 OTTHUMG00000155577 NG_005352 19123937 PGOHUM00000232918 +HGNC:36513 RPS3AP26 ribosomal protein S3a pseudogene 26 pseudogene pseudogene Approved 7q21.3 07q21.3 2009-03-06 2012-10-04 644972 ENSG00000214389 OTTHUMG00000154287 NG_006069 19123937 PGOHUM00000232927 +HGNC:35978 RPS3AP27 ribosomal protein S3a pseudogene 27 pseudogene pseudogene Approved 7q31 07q31 2009-03-06 2009-03-11 100271255 NG_010795 19123937 +HGNC:35738 RPS3AP28 ribosomal protein S3a pseudogene 28 pseudogene pseudogene Approved 7q34 07q34 2009-03-06 2009-03-11 100271257 NG_010807 19123937 +HGNC:35531 RPS3AP29 ribosomal protein S3a pseudogene 29 pseudogene pseudogene Approved 7q21.3 07q21.3 2009-03-06 2012-11-12 730861 ENSG00000237818 OTTHUMG00000154184 NG_011230 19123937 PGOHUM00000232922 +HGNC:35538 RPS3AP30 ribosomal protein S3a pseudogene 30 pseudogene pseudogene Approved 8p23 08p23 2009-03-06 2009-03-11 100271254 ENSG00000228744 OTTHUMG00000150575 NG_010791 19123937 +HGNC:36860 RPS3AP31 ribosomal protein S3a pseudogene 31 pseudogene pseudogene Approved 8p23.1 08p23.1 2009-03-06 2009-03-11 100271256 NG_010800 19123937 +HGNC:36717 RPS3AP32 ribosomal protein S3a pseudogene 32 pseudogene pseudogene Approved 8q21.11 08q21.11 2009-03-06 2009-03-11 100271258 ENSG00000240047 OTTHUMG00000158628 NG_010813 19123937 +HGNC:35476 RPS3AP33 ribosomal protein S3a pseudogene 33 pseudogene pseudogene Approved 8p23 08p23 2009-03-06 2009-03-11 100271259 ENSG00000214268 OTTHUMG00000149981 NG_010816 19123937 +HGNC:36293 RPS3AP34 ribosomal protein S3a pseudogene 34 pseudogene pseudogene Approved 8p23.1 08p23.1 2009-03-06 2009-03-11 100271260 ENSG00000242607 OTTHUMG00000158124 NG_010820 19123937 +HGNC:35902 RPS3AP35 ribosomal protein S3a pseudogene 35 pseudogene pseudogene Approved 8p23.1 08p23.1 2009-03-06 2009-03-11 100271261 ENSG00000244289 OTTHUMG00000158126 NG_010825 19123937 +HGNC:35596 RPS3AP36 ribosomal protein S3a pseudogene 36 pseudogene pseudogene Approved 10q24.1 10q24.1 2009-03-06 2016-08-17 643981 ENSG00000214362 OTTHUMG00000018816 NG_010737 19123937 PGOHUM00000290259 +HGNC:36691 RPS3AP37 ribosomal protein S3a pseudogene 37 pseudogene pseudogene Approved 10q21.3 10q21.3 2009-03-06 2016-08-16 100271593 ENSG00000227583 OTTHUMG00000018357 NG_011202 19123937 PGOHUM00000290193 +HGNC:36145 RPS3AP38 ribosomal protein S3a pseudogene 38 pseudogene pseudogene Approved 10q21.3 10q21.3 2009-03-06 2016-08-17 100271594 ENSG00000226318 OTTHUMG00000018341 NG_011211 19123937 PGOHUM00000289883 +HGNC:35490 RPS3AP39 ribosomal protein S3a pseudogene 39 pseudogene pseudogene Approved 11p15.4 11p15.4 2009-03-06 2009-03-11 730993 ENSG00000237226 OTTHUMG00000011698 NG_010582 19123937 +HGNC:35869 RPS3AP40 ribosomal protein S3a pseudogene 40 pseudogene pseudogene Approved 11q13.2 11q13.2 2009-03-06 2009-03-11 100129199 ENSG00000243672 OTTHUMG00000158401 NG_010912 19123937 +HGNC:37000 RPS3AP41 ribosomal protein S3a pseudogene 41 pseudogene pseudogene Approved 11q13.4 11q13.4 2009-03-06 2013-09-23 100271595 ENSG00000239481 OTTHUMG00000158403 NG_011216 19123937 PGOHUM00000242782 +HGNC:35605 RPS3AP42 ribosomal protein S3a pseudogene 42 pseudogene pseudogene Approved 11q14.3 11q14.3 2009-03-06 2009-03-11 100271597 ENSG00000244244 OTTHUMG00000158439 NG_011229 19123937 +HGNC:36684 RPS3AP43 ribosomal protein S3a pseudogene 43 pseudogene pseudogene Approved 12p13.31 12p13.31 2009-03-06 2013-05-30 727970 ENSG00000242661 OTTHUMG00000157447 NG_010849 19123937 PGOHUM00000250983 +HGNC:36761 RPS3AP44 ribosomal protein S3a pseudogene 44 pseudogene pseudogene Approved 13q12.13 13q12.13 2009-03-06 2010-11-24 646527 ENSG00000234031 OTTHUMG00000016618 NG_010660 19123937 PGOHUM00000248547 +HGNC:36338 RPS3AP46 ribosomal protein S3a pseudogene 46 pseudogene pseudogene Approved 14q22.2 14q22.2 2009-03-06 2016-10-05 100271596 ENSG00000226132 OTTHUMG00000060736 NG_011220 19123937 PGOHUM00000248175 +HGNC:36744 RPS3AP47 ribosomal protein S3a pseudogene 47 pseudogene pseudogene Approved 15q15.2 15q15.2 2009-03-06 2009-03-11 146053 ENSG00000205871 OTTHUMG00000157905 NG_010693 19123937 +HGNC:36792 RPS3AP48 ribosomal protein S3a pseudogene 48 pseudogene pseudogene Approved 16p13.3 16p13.3 2009-03-06 2009-03-11 100127963 NG_011131 19123937 +HGNC:36810 RPS3AP49 ribosomal protein S3a pseudogene 49 pseudogene pseudogene Approved 18q21.32 18q21.32 2009-03-06 2009-03-11 400652 ENSG00000242060 OTTHUMG00000158256 NG_010032 19123937 +HGNC:37018 RPS3AP50 ribosomal protein S3a pseudogene 50 pseudogene pseudogene Approved 19q13.11 19q13.11 2009-03-06 2012-11-12 100271601 ENSG00000243864 OTTHUMG00000158153 NG_011245 19123937 PGOHUM00000234660 +HGNC:35480 RPS3AP51 ribosomal protein S3a pseudogene 51 pseudogene pseudogene Approved 22q12.2 22q12.2 2009-03-06 2009-03-11 100271600 NG_011242 19123937 +HGNC:42004 RPS3AP52 ribosomal protein S3a pseudogene 52 pseudogene pseudogene Approved 13q21.33 13q21.33 2011-05-31 2011-05-31 100873818 ENSG00000230405 OTTHUMG00000017048 NG_032387 PGOHUM00000249956 +HGNC:44500 RPS3AP53 ribosomal protein S3a pseudogene 53 pseudogene pseudogene Approved 3p25.1 03p25.1 2012-11-12 2012-11-12 100287512 ENSG00000227578 OTTHUMG00000155576 NG_022239 PGOHUM00000237950 +HGNC:49750 RPS3AP54 ribosomal protein S3a pseudogene 54 pseudogene pseudogene Approved 9p24.1 09p24.1 2014-02-13 2014-02-13 101927101 ENSG00000229057 OTTHUMG00000019526 PGOHUM00000250518 +HGNC:10423 RPS3L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:16579 RPS3P1 ribosomal protein S3 pseudogene 1 pseudogene pseudogene Approved 20p12.1 20p12.1 dJ631M13.3 2001-09-17 2016-07-22 140754 ENSG00000230935 OTTHUMG00000031912 NG_000997 PGOHUM00000297055 +HGNC:16603 RPS3P2 ribosomal protein S3 pseudogene 2 pseudogene pseudogene Approved 20q11.23 20q11.23 dJ927M24.3 2009-03-01 2016-07-22 140761 ENSG00000231307 OTTHUMG00000032448 NG_001004 19123937 PGOHUM00000297117 +HGNC:36700 RPS3P3 ribosomal protein S3 pseudogene 3 pseudogene pseudogene Approved 3q27.1 03q27.1 2009-03-06 2009-03-11 440991 NG_010838 19123937 +HGNC:36616 RPS3P4 ribosomal protein S3 pseudogene 4 pseudogene pseudogene Approved 6p25 06p25 2009-03-06 2009-03-11 100270862 NG_010045 19123937 +HGNC:36869 RPS3P5 ribosomal protein S3 pseudogene 5 pseudogene pseudogene Approved 6q16.3 06q16.3 2009-03-06 2009-03-11 100131956 NG_010604 19123937 +HGNC:36061 RPS3P6 ribosomal protein S3 pseudogene 6 pseudogene pseudogene Approved 12q14.1 12q14.1 2009-03-06 2012-10-03 645000 ENSG00000213363 OTTHUMG00000157595 NG_010709 19123937 PGOHUM00000257942 +HGNC:36056 RPS3P7 ribosomal protein S3 pseudogene 7 pseudogene pseudogene Approved 16q23.1 16q23.1 2009-03-06 2012-08-15 645957 ENSG00000243101 OTTHUMG00000158264 NG_011363 19123937 PGOHUM00000249177 +HGNC:10424 RPS4X ribosomal protein S4, X-linked protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "DXS306|CCG2|SCAR|SCR10|FLJ40595|RPS4|S4" "40S ribosomal protein S4, X isoform|ribosomal protein S4X isoform|single-copy abundant mRNA|cell cycle gene 2" S ribosomal proteins 728 1991-08-17 2014-11-19 6191 ENSG00000198034 OTTHUMG00000021813 uc004ear.4 NM_001007 CCDS14418 P62701 "1795030|8139551" MGI:98158 RGD:2324318 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPS4X RPS4X 312760 +HGNC:32444 RPS4XP1 ribosomal protein S4X pseudogene 1 pseudogene pseudogene Approved 12q23.1 12q23.1 RPS4P1 ribosomal protein S4 pseudogene 1 2009-03-01 2010-02-04 2010-02-04 2014-11-19 400064 ENSG00000214203 OTTHUMG00000157676 AC126474 NG_009506 19123937 PGOHUM00000239559 +HGNC:16563 RPS4XP2 ribosomal protein S4X pseudogene 2 pseudogene pseudogene Approved 20p13 20p13 dJ189G13.2 "RPS4L2|RPS4P2" "ribosomal protein S4-like 2|ribosomal protein S4 pseudogene 2" 2009-03-01 2010-02-04 2010-02-04 2014-11-19 92507 ENSG00000226948 OTTHUMG00000031784 AL121916 NG_000950.3 19123937 PGOHUM00000247432 +HGNC:16251 RPS4XP3 ribosomal protein S4X pseudogene 3 pseudogene pseudogene Approved 20q13.31 20q13.31 dJ843L14.2 "RPS4L|RPS4P3" "ribosomal protein S4-like|ribosomal protein S4 pseudogene 3" 2001-07-17 2010-02-04 2010-02-04 2012-09-20 128580 ENSG00000214541 OTTHUMG00000032802 NG_000967 PGOHUM00000247680 +HGNC:36545 RPS4XP4 ribosomal protein S4X pseudogene 4 pseudogene pseudogene Approved 1p36.12 01p36.12 RPS4P4 2009-03-06 2010-02-04 2013-05-14 441878 ENSG00000215520 OTTHUMG00000002839 NG_010104 19123937 PGOHUM00000244629 +HGNC:36670 RPS4XP5 ribosomal protein S4X pseudogene 5 pseudogene pseudogene Approved 2p15 02p15 RPS4P5 2009-03-06 2010-02-04 2013-09-05 100271132 ENSG00000229920 OTTHUMG00000152611 NG_010143 19123937 PGOHUM00000264483 +HGNC:36057 RPS4XP6 ribosomal protein S4X pseudogene 6 pseudogene pseudogene Approved 5p13.2 05p13.2 RPS4P6 2009-03-06 2010-02-04 2013-05-14 391777 ENSG00000244073 OTTHUMG00000157671 NG_010506 19123937 PGOHUM00000235562 +HGNC:36885 RPS4XP7 ribosomal protein S4X pseudogene 7 pseudogene pseudogene Approved 6p23 06p23 RPS4P7 2009-03-06 2010-02-04 2013-05-14 442162 ENSG00000218265 OTTHUMG00000014275 NG_010267 19123937 PGOHUM00000243489 +HGNC:36683 RPS4XP8 ribosomal protein S4X pseudogene 8 pseudogene pseudogene Approved 6q25.2 06q25.2 RPS4P8 2009-03-06 2010-02-04 2013-05-14 646269 ENSG00000219146 OTTHUMG00000015875 NG_010649 19123937 PGOHUM00000243834 +HGNC:35792 RPS4XP9 ribosomal protein S4X pseudogene 9 pseudogene pseudogene Approved 6q22.32 06q22.32 RPS4P9 2009-03-06 2010-02-04 2013-05-14 442257 ENSG00000217404 OTTHUMG00000016146 NG_010761 19123937 PGOHUM00000243767 +HGNC:35741 RPS4XP10 ribosomal protein S4X pseudogene 10 pseudogene pseudogene Approved 8q22.1 08q22.1 RPS4P10 2009-03-06 2010-02-04 2013-05-14 100271133 ENSG00000244217 OTTHUMG00000158666 NG_010150 19123937 PGOHUM00000249748 +HGNC:37013 RPS4XP11 ribosomal protein S4X pseudogene 11 pseudogene pseudogene Approved 10p11.22 10p11.22 RPS4P11 2009-03-06 2010-02-04 2013-05-14 441550 ENSG00000234335 OTTHUMG00000017915 NG_011069 19123937 PGOHUM00000238394 +HGNC:35951 RPS4XP12 ribosomal protein S4X pseudogene 12 pseudogene pseudogene Approved 11q23.3 11q23.3 RPS4P12 2009-03-06 2010-02-04 2013-05-14 100271385 ENSG00000244400 OTTHUMG00000158474 NG_010122 19123937 PGOHUM00000242510 +HGNC:36522 RPS4XP13 ribosomal protein S4X pseudogene 13 pseudogene pseudogene Approved 11q12.1 11q12.1 RPS4P13 2009-03-06 2010-02-04 2013-05-14 390183 ENSG00000240371 OTTHUMG00000158394 NG_010213 19123937 PGOHUM00000242288 +HGNC:36737 RPS4XP14 ribosomal protein S4X pseudogene 14 pseudogene pseudogene Approved 12p13.33 12p13.33 RPS4P14 2009-03-06 2010-02-04 2013-05-14 729097 ENSG00000243663 OTTHUMG00000157376 NG_010015 19123937 PGOHUM00000239291 +HGNC:36308 RPS4XP15 ribosomal protein S4X pseudogene 15 pseudogene pseudogene Approved 12q21.32 12q21.32 RPS4P15 2009-03-06 2010-02-04 2013-05-14 100131055 ENSG00000240721 OTTHUMG00000157662 NG_011238 19123937 +HGNC:36365 RPS4XP16 ribosomal protein S4X pseudogene 16 pseudogene pseudogene Approved 13q14.3 13q14.3 RPS4P16 2009-03-06 2010-02-04 2014-11-19 220433 ENSG00000224892 OTTHUMG00000016946 NG_010070 19123937 PGOHUM00000248595 +HGNC:36789 RPS4XP17 ribosomal protein S4X pseudogene 17 pseudogene pseudogene Approved 17p13.3 17p13.3 RPS4P17 2009-03-06 2010-02-04 2013-05-14 100128140 ENSG00000244097 OTTHUMG00000157647 NG_010733 19123937 PGOHUM00000236898 +HGNC:36170 RPS4XP18 ribosomal protein S4X pseudogene 18 pseudogene pseudogene Approved 18q11.2 18q11.2 RPS4P18 2009-03-06 2010-02-04 2013-05-14 646583 ENSG00000239490 OTTHUMG00000158176 NG_010953 19123937 PGOHUM00000235027 +HGNC:36872 RPS4XP19 ribosomal protein S4X pseudogene 19 pseudogene pseudogene Approved 18p11.22 18p11.22 RPS4P19 2009-03-06 2010-02-04 2013-05-14 645573 ENSG00000242058 OTTHUMG00000158162 NG_011021 19123937 PGOHUM00000234984 +HGNC:36437 RPS4XP20 ribosomal protein S4X pseudogene 20 pseudogene pseudogene Approved 19q13.11 19q13.11 RPS4P20 2009-03-06 2010-02-04 2013-06-03 100271386 ENSG00000249987 OTTHUMG00000184237 NG_010128 19123937 PGOHUM00000259324 +HGNC:36228 RPS4XP21 ribosomal protein S4X pseudogene 21 pseudogene pseudogene Approved 19q13.11 19q13.11 RPS4P21 2009-03-06 2010-02-04 2014-11-19 126235 ENSG00000186008 OTTHUMG00000158165 NG_009255 19123937 RPS4XP21 +HGNC:36125 RPS4XP22 ribosomal protein S4X pseudogene 22 pseudogene pseudogene Approved 19p13.2 19p13.2 RPS4P22 2009-03-06 2010-02-04 2013-05-14 100131614 ENSG00000239830 OTTHUMG00000157988 NG_010161 19123937 PGOHUM00000234150 +HGNC:48367 RPS4XP23 ribosomal protein S4X pseudogene 23 pseudogene pseudogene Approved 19q13.11 19q13.11 2013-05-14 2013-05-14 2013-05-14 106480153 ENSG00000239253 OTTHUMG00000158173 NG_043113 PGOHUM00000234661 +HGNC:10425 RPS4Y1 ribosomal protein S4, Y-linked 1 protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 "MGC5070|MGC119100|S4" "ribosomal protein S4Y|40S ribosomal protein S4, Y" RPS4Y ribosomal protein S4, Y-linked "S ribosomal proteins|Minor histocompatibility antigens" "728|870" 1991-08-08 2004-05-26 2004-05-21 2016-10-05 6192 ENSG00000129824 OTTHUMG00000036152 uc004fqi.4 NM_001008 CCDS14773 P22090 MGI:98158 RPS4Y1 470000 +HGNC:36893 RPS4Y1P1 ribosomal protein S4Y pseudogene 1 pseudogene pseudogene Approved 16q23.1 16q23.1 2009-03-06 2009-03-11 441774 NG_009472 19123937 +HGNC:18501 RPS4Y2 ribosomal protein S4, Y-linked 2 protein-coding gene gene with protein product Approved Yq11.223 Yq11.223 RPS4Y2P ribosomal protein S4, Y-linked 2 pseudogene S ribosomal proteins 728 2002-05-22 2006-02-22 2006-02-22 2015-08-03 140032 ENSG00000280969 OTTHUMG00000036540 uc011nbb.3 AF497481 NM_001039567 CCDS44028 Q8TD47 12815422 RGD:1590988 RPS4Y2 400030 +HGNC:10426 RPS5 ribosomal protein S5 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 S5 40S ribosomal protein S5 S ribosomal proteins 728 1997-07-07 2014-11-19 6193 ENSG00000083845 OTTHUMG00000183530 uc002qsn.4 U14970 NM_001009 CCDS12978 P46782 "7772601|9582194" MGI:1097682 RGD:3601 RPS5 603630 +HGNC:10428 RPS5P1 ribosomal protein S5 pseudogene 1 pseudogene pseudogene Approved 6q22.1 06q22.1 2009-03-01 2014-11-19 26516 NG_000896 19123937 +HGNC:17222 RPS5P2 ribosomal protein S5 pseudogene 2 pseudogene pseudogene Approved 21q22.11 21q22.11 2009-03-01 2014-11-18 100130240 ENSG00000224598 OTTHUMG00000065822 NG_009782 19123937 PGOHUM00000239070 +HGNC:10427 RPS5P3 ribosomal protein S5 pseudogene 3 pseudogene pseudogene Approved 21q22.11 21q22.11 RPS5L ribosomal protein S5-like 2009-03-01 2009-01-23 2009-01-23 2014-11-18 54022 ENSG00000215088 OTTHUMG00000065532 NG_000903 19123937 PGOHUM00000239068 +HGNC:36122 RPS5P4 ribosomal protein S5 pseudogene 4 pseudogene pseudogene Approved 1q32.3 01q32.3 2009-03-06 2009-03-11 100129090 NG_010354 19123937 +HGNC:35626 RPS5P5 ribosomal protein S5 pseudogene 5 pseudogene pseudogene Approved 8q21.13 08q21.13 2009-03-06 2009-03-11 340443 NG_011128 19123937 +HGNC:35960 RPS5P6 ribosomal protein S5 pseudogene 6 pseudogene pseudogene Approved 9p24.1 09p24.1 2009-03-06 2009-03-11 392282 NG_010474 19123937 +HGNC:36881 RPS5P7 ribosomal protein S5 pseudogene 7 pseudogene pseudogene Approved Xq23 Xq23 2009-03-06 2016-10-05 392520 ENSG00000225381 OTTHUMG00000022191 NG_010389 19123937 PGOHUM00000241946 +HGNC:36531 RPS5P8 ribosomal protein S5 pseudogene 8 pseudogene pseudogene Approved Xp22.31 Xp22.31 2009-03-06 2009-03-11 392424 NG_011198 19123937 +HGNC:10429 RPS6 ribosomal protein S6 protein-coding gene gene with protein product Approved 9p22.1 09p22.1 S6 "40S ribosomal protein S6|phosphoprotein NP33" S ribosomal proteins 728 1990-07-06 2016-10-05 6194 ENSG00000137154 OTTHUMG00000019642 uc003znv.2 NM_001010 CCDS6492 P62753 1577483 MGI:98159 RGD:3602 RPS6 180460 +HGNC:10430 RPS6KA1 ribosomal protein S6 kinase A1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "RSK|RSK1|HU-1|p90Rsk" ribosomal protein S6 kinase, 90kD, polypeptide 1 Mitogen-activated protein kinase-activated protein kinases 1156 1994-07-11 2016-03-01 2016-03-01 6195 ENSG00000117676 OTTHUMG00000004003 uc001bmr.2 BC014966 NM_002953 "CCDS284|CCDS30649|CCDS81286" Q15418 8141249 MGI:104558 RGD:620675 RPS6KA1 601684 objectId:1527 +HGNC:10431 RPS6KA2 ribosomal protein S6 kinase A2 protein-coding gene gene with protein product Approved 6q27 06q27 "RSK|RSK3|HU-2" ribosomal protein S6 kinase, 90kD, polypeptide 2 Mitogen-activated protein kinase-activated protein kinases 1156 1994-07-11 2016-03-01 2016-03-01 6196 ENSG00000071242 OTTHUMG00000016007 uc003qvb.2 L07598 NM_021135 "CCDS5294|CCDS34570|CCDS83147|CCDS83148" Q15349 8141249 MGI:1342290 RGD:620676 RPS6KA2 601685 objectId:1529 +HGNC:40511 RPS6KA2-AS1 RPS6KA2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q27 06q27 RPS6KA2 antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2012-01-25 2012-08-15 2014-11-18 100861523 ENSG00000231654 OTTHUMG00000016006 uc032xsy.2 "AA707471|AW290888" NR_046644 19287968 rps6ka2-antisense-transcript +HGNC:41378 RPS6KA2-IT1 RPS6KA2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6q27 06q27 RPS6KA2 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874353 ENSG00000232082 OTTHUMG00000046164 uc031src.1 NR_046793 +HGNC:10432 RPS6KA3 ribosomal protein S6 kinase A3 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 "RSK|RSK2|HU-3" "MRX19|CLS" ribosomal protein S6 kinase, 90kD, polypeptide 3 "X-linked mental retardation|Mitogen-activated protein kinase-activated protein kinases" "103|1156" 1994-07-11 2016-03-01 2016-10-05 6197 ENSG00000177189 OTTHUMG00000021231 uc004czu.4 U08316 NM_004586 CCDS14197 P51812 "8141249|11896450|16879200" MGI:104557 RGD:1563860 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPS6KA3 RPS6KA3 300075 118405 objectId:1528 +HGNC:10433 RPS6KA4 ribosomal protein S6 kinase A4 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "RSK-B|MSK2" ribosomal protein S6 kinase, 90kD, polypeptide 4 Mitogen-activated protein kinase-activated protein kinases 1156 1999-03-10 2016-03-01 2016-10-05 8986 ENSG00000162302 OTTHUMG00000046094 uc001oae.4 AJ010119 NM_003942 "CCDS8073|CCDS73313" O75676 "9792677|9687510" MGI:1930076 RGD:1307277 RPS6KA4 603606 objectId:1524 +HGNC:10434 RPS6KA5 ribosomal protein S6 kinase A5 protein-coding gene gene with protein product Approved 14q32.11 14q32.11 "MSK1|RLPK" ribosomal protein S6 kinase, 90kD, polypeptide 5 Mitogen-activated protein kinase-activated protein kinases 1156 1999-03-10 2016-03-01 2016-03-01 9252 ENSG00000100784 OTTHUMG00000171055 uc001xys.4 AF074393 NM_004755 "CCDS9893|CCDS45149|CCDS81839" O75582 "9687510|10702687" MGI:1920336 RGD:1308336 RPS6KA5 603607 objectId:1523 +HGNC:10435 RPS6KA6 ribosomal protein S6 kinase A6 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 RSK4 ribosomal protein S6 kinase, 90kD, polypeptide 6 Mitogen-activated protein kinase-activated protein kinases 1156 2000-02-17 2016-03-01 2016-03-01 27330 ENSG00000072133 OTTHUMG00000021923 uc004eej.3 AF184965 NM_014496 "CCDS14451|CCDS83480" Q9UK32 10644430 MGI:1914321 RGD:1560817 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RPS6KA6 RPS6KA6 300303 objectId:1530 +HGNC:10436 RPS6KB1 ribosomal protein S6 kinase B1 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "S6K1|p70(S6K)-alpha|PS6K" STK14A ribosomal protein S6 kinase, 70kD, polypeptide 1 1994-07-11 2016-03-01 2016-03-01 6198 ENSG00000108443 OTTHUMG00000150642 uc002ixy.5 M60724 NM_003161 "CCDS11621|CCDS62271|CCDS62272|CCDS62273" P23443 1922062 MGI:1270849 RGD:620683 RPS6KB1 608938 objectId:1525 +HGNC:10437 RPS6KB2 ribosomal protein S6 kinase B2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "p70S6Kb|P70-BETA|STK14B|KLS" ribosomal protein S6 kinase, 70kD, polypeptide 2 1994-07-13 2016-03-01 2016-10-05 6199 ENSG00000175634 OTTHUMG00000167673 uc001old.4 AB019245 NM_003952 CCDS41677 Q9UBS0 "9878560|9804755" MGI:1927343 RGD:1305144 RPS6KB2 608939 objectId:1526 +HGNC:10438 RPS6KB3 ribosomal protein S6 kinase B3 other unknown Approved reserved reserved ribosomal protein S6 kinase, 70kD, polypeptide 3 1994-07-13 2016-03-01 2016-03-01 6200 +HGNC:10439 RPS6KC1 ribosomal protein S6 kinase C1 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 humS6PKh1 ribosomal protein S6 kinase, 52kD, polypeptide 1 1999-12-14 2016-03-01 2016-10-05 26750 ENSG00000136643 OTTHUMG00000036926 uc010ptr.4 AF037447 NM_012424 "CCDS1513|CCDS44317|CCDS73028|CCDS73029|CCDS73030" Q96S38 10552933 MGI:2443419 RGD:1306578 RPS6KC1 objectId:1532 +HGNC:20222 RPS6KL1 ribosomal protein S6 kinase like 1 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 MGC11287 ribosomal protein S6 kinase-like 1 2003-01-15 2015-11-17 2016-04-25 83694 ENSG00000198208 OTTHUMG00000171484 uc010tux.3 BC004540 XM_017021680 CCDS9834 Q9Y6S9 MGI:2443413 RGD:1309493 RPS6KL1 objectId:1533 +HGNC:32478 RPS6P1 ribosomal protein S6 pseudogene 1 pseudogene pseudogene Approved 12p13.1 12p13.1 2009-03-01 2014-11-18 440086 NG_009657 19123937 RPS6P1 +HGNC:36446 RPS6P2 ribosomal protein S6 pseudogene 2 pseudogene pseudogene Approved 2q31.2 02q31.2 2009-03-06 2013-09-23 100270864 ENSG00000231541 OTTHUMG00000154556 NG_010058 19123937 PGOHUM00000241034 +HGNC:36943 RPS6P3 ribosomal protein S6 pseudogene 3 pseudogene pseudogene Approved 2q11.2 02q11.2 2009-03-06 2009-03-11 644013 NG_010900 19123937 +HGNC:36548 RPS6P4 ribosomal protein S6 pseudogene 4 pseudogene pseudogene Approved 3q26.1 03q26.1 2009-03-06 2009-03-11 100131548 NG_011139 19123937 +HGNC:36242 RPS6P5 ribosomal protein S6 pseudogene 5 pseudogene pseudogene Approved 4q13.1 04q13.1 2009-03-06 2009-03-11 100130347 NG_010236 19123937 +HGNC:36092 RPS6P7 ribosomal protein S6 pseudogene 7 pseudogene pseudogene Approved 6q14.1 06q14.1 2009-03-06 2009-03-11 100128162 ENSG00000219253 OTTHUMG00000015067 NG_010850 19123937 +HGNC:36999 RPS6P8 ribosomal protein S6 pseudogene 8 pseudogene pseudogene Approved 6q13 06q13 2009-03-06 2009-03-11 100128450 ENSG00000224221 OTTHUMG00000015021 NG_011004 19123937 +HGNC:35938 RPS6P9 ribosomal protein S6 pseudogene 9 pseudogene pseudogene Approved 8q22.3 08q22.3 2009-03-06 2009-03-11 100131467 NG_010727 19123937 +HGNC:36730 RPS6P10 ribosomal protein S6 pseudogene 10 pseudogene pseudogene Approved 9p22.1 09p22.1 2009-03-06 2009-03-11 100270865 NG_010065 19123937 +HGNC:36270 RPS6P11 ribosomal protein S6 pseudogene 11 pseudogene pseudogene Approved 9p24 09p24 2009-03-06 2009-03-11 100270866 NG_010074 19123937 +HGNC:36375 RPS6P12 ribosomal protein S6 pseudogene 12 pseudogene pseudogene Approved 9q21.32 09q21.32 2009-03-06 2013-09-23 100270867 ENSG00000233309 OTTHUMG00000020099 NG_010080 19123937 PGOHUM00000236233 +HGNC:35772 RPS6P13 ribosomal protein S6 pseudogene 13 pseudogene pseudogene Approved 9q21.33 09q21.33 2009-03-06 2009-03-11 392358 NG_010868 19123937 +HGNC:36738 RPS6P14 ribosomal protein S6 pseudogene 14 pseudogene pseudogene Approved 10q11.22 10q11.22 2009-03-06 2016-08-17 100131396 ENSG00000225482 OTTHUMG00000018170 NG_010363 19123937 PGOHUM00000290152 +HGNC:36942 RPS6P15 ribosomal protein S6 pseudogene 15 pseudogene pseudogene Approved 10q25.2 10q25.2 2009-03-06 2016-08-16 100129732 ENSG00000230809 OTTHUMG00000019054 NG_011016 19123937 PGOHUM00000289991 +HGNC:35668 RPS6P16 ribosomal protein S6 pseudogene 16 pseudogene pseudogene Approved 11q23.1 11q23.1 2009-03-06 2009-03-11 100128923 ENSG00000243250 OTTHUMG00000158460 NG_010818 19123937 +HGNC:36669 RPS6P17 ribosomal protein S6 pseudogene 17 pseudogene pseudogene Approved 11q22.2 11q22.2 2009-03-06 2009-03-11 120318 NG_011320 19123937 +HGNC:36496 RPS6P18 ribosomal protein S6 pseudogene 18 pseudogene pseudogene Approved 12p13.3 12p13.3 2009-03-06 2009-03-11 100271135 NG_010164 19123937 +HGNC:36136 RPS6P19 ribosomal protein S6 pseudogene 19 pseudogene pseudogene Approved 12q23.2 12q23.2 2009-03-06 2009-03-11 100271136 NG_010169 19123937 +HGNC:36940 RPS6P20 ribosomal protein S6 pseudogene 20 pseudogene pseudogene Approved 12q24.33 12q24.33 2009-03-06 2009-03-11 100271262 ENSG00000226356 OTTHUMG00000157842 NG_010830 19123937 +HGNC:36478 RPS6P21 ribosomal protein S6 pseudogene 21 pseudogene pseudogene Approved 12q24.33 12q24.33 2009-03-06 2009-03-11 100271263 ENSG00000243499 OTTHUMG00000168312 NG_010836 19123937 +HGNC:35655 RPS6P22 ribosomal protein S6 pseudogene 22 pseudogene pseudogene Approved 12q14.1 12q14.1 2009-03-06 2009-03-11 100129227 ENSG00000244390 OTTHUMG00000157585 NG_011052 19123937 +HGNC:39581 RPS6P23 ribosomal protein S6 pseudogene 23 pseudogene pseudogene Approved 13q32.3 13q32.3 2011-03-15 2011-03-15 100130313 ENSG00000230871 OTTHUMG00000017259 NG_009870 PGOHUM00000248672 +HGNC:36070 RPS6P24 ribosomal protein S6 pseudogene 24 pseudogene pseudogene Approved 14q12 14q12 2009-03-06 2009-03-11 100128358 NG_010528 19123937 +HGNC:35948 RPS6P25 ribosomal protein S6 pseudogene 25 pseudogene pseudogene Approved 19p13.13 19p13.13 2009-03-06 2015-07-22 729389 ENSG00000240616 OTTHUMG00000158022 NG_010244 19123937 PGOHUM00000295212 +HGNC:36713 RPS6P26 ribosomal protein S6 pseudogene 26 pseudogene pseudogene Approved Xq13.2 Xq13.2 2009-03-06 2009-03-11 392497 NG_010262 19123937 +HGNC:10440 RPS7 ribosomal protein S7 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 S7 S ribosomal proteins 728 1997-07-07 2016-10-05 6201 ENSG00000171863 OTTHUMG00000090305 uc002qxw.4 NM_001011 CCDS1648 P62081 "8522193|10625621" MGI:1333818 RGD:61907 Diamond-Blackfan Anemia|http://www.dbagenes.unito.it/home.php?select_db=RPS7 RPS7 603658 171050 +HGNC:17081 RPS7P1 ribosomal protein S7 pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 2009-03-01 2015-01-30 388363 ENSG00000263266 OTTHUMG00000132828 NG_005669 19123937 +HGNC:36079 RPS7P2 ribosomal protein S7 pseudogene 2 pseudogene pseudogene Approved 1q21.3 01q21.3 2009-03-06 2016-10-05 100270868 ENSG00000231837 OTTHUMG00000036513 NG_010085 19123937 PGOHUM00000245009 +HGNC:36518 RPS7P3 ribosomal protein S7 pseudogene 3 pseudogene pseudogene Approved 1q42.2 01q42.2 2009-03-06 2011-04-08 440732 ENSG00000231940 OTTHUMG00000037888 NG_009603 19123937 PGOHUM00000244480 +HGNC:36000 RPS7P4 ribosomal protein S7 pseudogene 4 pseudogene pseudogene Approved 1p31.3 01p31.3 2009-03-06 2011-04-08 149224 ENSG00000229133 OTTHUMG00000009206 NG_011195 19123937 RPS7P4 PGOHUM00000244064 +HGNC:37037 RPS7P5 ribosomal protein S7 pseudogene 5 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2011-04-08 645884 ENSG00000217327 OTTHUMG00000039882 NG_011309 19123937 PGOHUM00000245271 +HGNC:36334 RPS7P6 ribosomal protein S7 pseudogene 6 pseudogene pseudogene Approved 4p15.32 04p15.32 2009-03-06 2016-10-05 100270869 ENSG00000215278 OTTHUMG00000157441 NG_010094 19123937 PGOHUM00000245475 +HGNC:35690 RPS7P7 ribosomal protein S7 pseudogene 7 pseudogene pseudogene Approved 4p13 04p13 2009-03-06 2011-04-08 100270870 ENSG00000240167 OTTHUMG00000157459 NG_010101 19123937 PGOHUM00000245891 +HGNC:35710 RPS7P8 ribosomal protein S7 pseudogene 8 pseudogene pseudogene Approved 6q16.1 06q16.1 2009-03-06 2011-04-08 442237 ENSG00000213183 OTTHUMG00000015240 NG_010648 19123937 PGOHUM00000243302 +HGNC:36998 RPS7P9 ribosomal protein S7 pseudogene 9 pseudogene pseudogene Approved 10q23.1 10q23.1 2009-03-06 2011-04-08 100128756 ENSG00000233353 OTTHUMG00000018619 NG_011267 19123937 PGOHUM00000238563 +HGNC:39903 RPS7P10 ribosomal protein S7 pseudogene 10 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-04-08 2014-11-19 100128060 ENSG00000226525 OTTHUMG00000016546 NG_009676 +HGNC:35841 RPS7P11 ribosomal protein S7 pseudogene 11 pseudogene pseudogene Approved 17q21.31 17q21.31 2009-03-06 2016-10-05 644315 ENSG00000213326 OTTHUMG00000157855 NG_011130 19123937 PGOHUM00000237095 +HGNC:36147 RPS7P12 ribosomal protein S7 pseudogene 12 pseudogene pseudogene Approved Xq26.3 Xq26.3 2009-03-06 2016-10-05 100270914 ENSG00000237432 OTTHUMG00000022460 NG_010350 19123937 PGOHUM00000242026 +HGNC:35756 RPS7P13 ribosomal protein S7 pseudogene 13 pseudogene pseudogene Approved Xq21.33 Xq21.33 2009-03-06 2011-04-08 100130435 ENSG00000235425 OTTHUMG00000021980 NG_010681 19123937 PGOHUM00000241453 +HGNC:36602 RPS7P14 ribosomal protein S7 pseudogene 14 pseudogene pseudogene Approved Xq13.2 Xq13.2 2009-03-06 2011-04-08 646108 ENSG00000213695 OTTHUMG00000021855 NG_011138 19123937 PGOHUM00000241855 +HGNC:48878 RPS7P15 ribosomal protein S7 pseudogene 15 pseudogene pseudogene Approved 4p16.2 04p16.2 2013-06-15 2013-06-21 728015 ENSG00000237170 OTTHUMG00000159924 NG_030264 PGOHUM00000250748 +HGNC:10441 RPS8 ribosomal protein S8 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 S8 S ribosomal proteins 728 1992-07-20 2016-10-05 6202 ENSG00000142937 OTTHUMG00000008494 uc001cmi.4 BC070875 NM_001012 CCDS513 P62241 8432552 MGI:98166 RGD:61910 RPS8 600357 +HGNC:19789 RPS8P1 ribosomal protein S8 pseudogene 1 pseudogene pseudogene Approved 14q32.33 14q32.33 2009-03-01 2014-11-19 192133 NG_002574 19123937 +HGNC:31000 RPS8P3 ribosomal protein S8 pseudogene 3 pseudogene pseudogene Approved 18q21.2 18q21.2 HsT2707 2009-03-01 2014-11-19 100132995 ENSG00000215457 OTTHUMG00000158249 NG_010683 19123937 +HGNC:17478 RPS8P4 ribosomal protein S8 pseudogene 4 pseudogene pseudogene Approved 10q26.11 10q26.11 Em:AC012468.5 2009-03-01 2016-08-16 646119 ENSG00000227437 OTTHUMG00000019153 NG_009795 19123937 PGOHUM00000290298 +HGNC:36417 RPS8P5 ribosomal protein S8 pseudogene 5 pseudogene pseudogene Approved 3p14.3 03p14.3 2009-03-06 2009-03-11 100131083 NG_010028 19123937 +HGNC:36947 RPS8P6 ribosomal protein S8 pseudogene 6 pseudogene pseudogene Approved 3p26.3 03p26.3 2009-03-06 2011-07-27 100270871 ENSG00000231660 OTTHUMG00000157085 NG_010107 19123937 PGOHUM00000237517 +HGNC:35795 RPS8P7 ribosomal protein S8 pseudogene 7 pseudogene pseudogene Approved 5q35.3 05q35.3 2009-03-06 2009-03-11 646093 NG_011062 19123937 +HGNC:36213 RPS8P8 ribosomal protein S8 pseudogene 8 pseudogene pseudogene Approved 5p13.3 05p13.3 2009-03-06 2009-03-11 728553 NG_011203 19123937 +HGNC:35524 RPS8P9 ribosomal protein S8 pseudogene 9 pseudogene pseudogene Approved 9p13.3 09p13.3 2009-03-06 2009-03-11 100130750 NG_010982 19123937 +HGNC:35628 RPS8P10 ribosomal protein S8 pseudogene 10 pseudogene pseudogene Approved 15q11.2 15q11.2 2009-03-06 2015-08-20 388076 ENSG00000223877 OTTHUMG00000172789 NG_011225 19123937 PGOHUM00000292828 +HGNC:10442 RPS9 ribosomal protein S9 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 S9 40S ribosomal protein S9 S ribosomal proteins 728 1997-07-07 2016-10-05 6203 ENSG00000170889 OTTHUMG00000066618 uc002qdx.4 U14971 NM_001013 "CCDS12884|CCDS82397" P46781 "7772601|9582194" MGI:1924096 RGD:619889 RPS9 603631 +HGNC:10443 RPS9P1 ribosomal protein S9 pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 RPS9P ribosomal protein S9 pseudogene 2009-03-01 2001-12-14 2001-12-07 2016-10-05 8410 ENSG00000214889 OTTHUMG00000086609 NG_003259 "9740676|19123937" PGOHUM00000239171 +HGNC:19428 RPS9P2 ribosomal protein S9 pseudogene 2 pseudogene pseudogene Approved 22q13.2 22q13.2 bA12M9.1 2009-03-01 2014-11-19 267009 NG_002404 19123937 +HGNC:36635 RPS9P3 ribosomal protein S9 pseudogene 3 pseudogene pseudogene Approved 5q21.1 05q21.1 2009-03-06 2009-03-11 100133054 NG_010983 19123937 +HGNC:36710 RPS9P4 ribosomal protein S9 pseudogene 4 pseudogene pseudogene Approved 19q13.33 19q13.33 2009-03-06 2009-03-11 388556 NG_009020 19123937 +HGNC:10383 RPS10 ribosomal protein S10 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "MGC88819|S10" S ribosomal proteins 728 1997-07-07 2015-09-07 6204 ENSG00000124614 OTTHUMG00000014546 uc003ojn.3 U14972 NM_001014 CCDS4792 P46783 "7772601|9582194" MGI:1914347 RGD:621024 RPS10 603632 225334 +HGNC:49181 RPS10-NUDT3 RPS10-NUDT3 readthrough other readthrough Approved 6p21.31 06p21.31 2013-09-25 2013-09-25 100529239 ENSG00000270800 OTTHUMG00000185089 NM_001202470 RGD:2320523 +HGNC:13981 RPS10P1 ribosomal protein S10 pseudogene 1 pseudogene pseudogene Approved 6p21 06p21 "RPS10p|dJ34B20.13" 2009-03-01 2014-11-19 394255 NG_009560 19123937 +HGNC:16594 RPS10P2 ribosomal protein S10 pseudogene 2 pseudogene pseudogene Approved 20p12.1 20p12.1 dJ858M22.1 2009-03-01 2016-07-25 140758 ENSG00000213950 OTTHUMG00000031918 NG_001001 19123937 PGOHUM00000297057 +HGNC:23684 RPS10P3 ribosomal protein S10 pseudogene 3 pseudogene pseudogene Approved 9q22.1 09q22.1 2009-03-01 2014-11-18 158104 ENSG00000217716 OTTHUMG00000020159 NG_009716 19123937 +HGNC:31364 RPS10P4 ribosomal protein S10 pseudogene 4 pseudogene pseudogene Approved 3q13.31 03q13.31 bcm1851 2009-03-01 2014-11-19 728791 AC079944 NG_009545 19123937 +HGNC:15795 RPS10P5 ribosomal protein S10 pseudogene 5 pseudogene pseudogene Approved 20p13 20p13 bA371L19.2 RPS10L ribosomal protein S10-like 2009-03-01 2009-01-23 2009-01-23 2016-07-22 93144 ENSG00000101278 OTTHUMG00000031646 AL118502 NG_000952 Q9NQ39 19123937 PGOHUM00000296873 +HGNC:35765 RPS10P6 ribosomal protein S10 pseudogene 6 pseudogene pseudogene Approved 1q21.3 01q21.3 2009-03-06 2009-03-11 729374 NG_010156 19123937 +HGNC:36423 RPS10P7 ribosomal protein S10 pseudogene 7 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2010-06-16 376693 NR_026667 19123937 +HGNC:36606 RPS10P8 ribosomal protein S10 pseudogene 8 pseudogene pseudogene Approved 1q23.1 01q23.1 2009-03-06 2009-03-11 729780 NG_010935 19123937 +HGNC:36451 RPS10P9 ribosomal protein S10 pseudogene 9 pseudogene pseudogene Approved 2p14 02p14 2009-03-06 2009-03-11 730187 NG_010404 19123937 +HGNC:37034 RPS10P10 ribosomal protein S10 pseudogene 10 pseudogene pseudogene Approved 3p14.2 03p14.2 2009-03-06 2009-03-11 389127 NG_010006 19123937 +HGNC:36775 RPS10P11 ribosomal protein S10 pseudogene 11 pseudogene pseudogene Approved 5q31.1 05q31.1 2009-03-06 2009-03-11 391833 NG_010811 19123937 +HGNC:36662 RPS10P12 ribosomal protein S10 pseudogene 12 pseudogene pseudogene Approved 5q11.2 05q11.2 2009-03-06 2009-03-11 133569 NG_011000 19123937 +HGNC:36374 RPS10P13 ribosomal protein S10 pseudogene 13 pseudogene pseudogene Approved 6p21.31 06p21.31 2009-03-06 2009-03-11 646785 NG_010670 19123937 +HGNC:35880 RPS10P14 ribosomal protein S10 pseudogene 14 pseudogene pseudogene Approved 7p14.1 07p14.1 2009-03-06 2011-12-12 646942 ENSG00000213744 OTTHUMG00000154987 NG_009425 19123937 PGOHUM00000233187 +HGNC:35860 RPS10P15 ribosomal protein S10 pseudogene 15 pseudogene pseudogene Approved 7q32.1 07q32.1 2009-03-06 2009-03-11 654029 NG_011064 19123937 +HGNC:36200 RPS10P16 ribosomal protein S10 pseudogene 16 pseudogene pseudogene Approved 8q24.11 08q24.11 2009-03-06 2016-08-17 100271050 ENSG00000239917 OTTHUMG00000158690 NG_011043 19123937 PGOHUM00000303363 +HGNC:35562 RPS10P17 ribosomal protein S10 pseudogene 17 pseudogene pseudogene Approved 9q33.3 09q33.3 2009-03-06 2009-03-11 645857 NG_011162 19123937 +HGNC:36239 RPS10P18 ribosomal protein S10 pseudogene 18 pseudogene pseudogene Approved 10q26.13 10q26.13 2009-03-06 2016-08-17 100271349 ENSG00000229455 OTTHUMG00000019212 NG_011271 19123937 PGOHUM00000290011 +HGNC:35907 RPS10P19 ribosomal protein S10 pseudogene 19 pseudogene pseudogene Approved 11p11.2 11p11.2 2009-03-06 2009-03-11 100271350 NG_011275 19123937 +HGNC:35829 RPS10P20 ribosomal protein S10 pseudogene 20 pseudogene pseudogene Approved 12q13.11 12q13.11 2009-03-06 2016-10-05 100271547 ENSG00000240443 OTTHUMG00000157558 NG_010964 19123937 PGOHUM00000239764 +HGNC:35906 RPS10P21 ribosomal protein S10 pseudogene 21 pseudogene pseudogene Approved 13q21.33 13q21.33 2009-03-06 2011-01-11 100271351 ENSG00000232881 OTTHUMG00000017065 NG_011279 19123937 PGOHUM00000249948 +HGNC:35814 RPS10P22 ribosomal protein S10 pseudogene 22 pseudogene pseudogene Approved 15q22.2 15q22.2 2009-03-06 2009-03-11 401817 NG_010809 19123937 +HGNC:36657 RPS10P23 ribosomal protein S10 pseudogene 23 pseudogene pseudogene Approved 16q22.3 16q22.3 2009-03-06 2009-03-11 645713 NG_011365 19123937 +HGNC:35989 RPS10P24 ribosomal protein S10 pseudogene 24 pseudogene pseudogene Approved 16q22.1 16q22.1 2009-03-06 2009-03-11 645299 NG_009469 19123937 +HGNC:36532 RPS10P25 ribosomal protein S10 pseudogene 25 pseudogene pseudogene Approved 17q21 17q21 2009-03-06 2009-03-11 100271546 NG_010960 19123937 +HGNC:36321 RPS10P26 ribosomal protein S10 pseudogene 26 pseudogene pseudogene Approved 17q23 17q23 2009-03-06 2009-03-11 100271548 NG_010969 19123937 +HGNC:36850 RPS10P27 ribosomal protein S10 pseudogene 27 pseudogene pseudogene Approved 18q11.2 18q11.2 2009-03-06 2009-03-11 100129556 ENSG00000267752 OTTHUMG00000158182 NG_010092 19123937 +HGNC:35511 RPS10P28 ribosomal protein S10 pseudogene 28 pseudogene pseudogene Approved 19q13.2 19q13.2 2009-03-06 2016-07-25 100132372 ENSG00000243167 OTTHUMG00000158201 NG_010093 19123937 PGOHUM00000295383 +HGNC:37120 RPS10P29 ribosomal protein S10 pseudogene 29 pseudogene pseudogene Approved 22q11.23 22q11.23 2009-07-09 2009-07-09 388885 NG_009906 +HGNC:35593 RPS10P30 ribosomal protein S10 pseudogene 30 pseudogene pseudogene Approved 22q11.23 22q11.23 2009-03-06 2009-03-11 343851 NG_010234 19123937 +HGNC:35998 RPS10P31 ribosomal protein S10 pseudogene 31 pseudogene pseudogene Approved 22q13.31 22q13.31 2009-03-06 2009-03-11 100129939 NG_010775 19123937 +HGNC:10384 RPS11 ribosomal protein S11 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 S11 40S ribosomal protein S11 S ribosomal proteins 728 1990-07-03 2014-11-18 6205 ENSG00000142534 OTTHUMG00000183156 uc002pob.3 AB007152 NM_001015 CCDS12769 P62280 "1577483|9582194" MGI:1351329 RGD:621026 RPS11 180471 +HGNC:16553 RPS11P1 ribosomal protein S11 pseudogene 1 pseudogene pseudogene Approved 20p12.2 20p12.2 dJ1060K6.1 2009-03-01 2016-07-25 128718 ENSG00000235544 OTTHUMG00000031884 NG_000972 19123937 PGOHUM00000296899 +HGNC:37007 RPS11P2 ribosomal protein S11 pseudogene 2 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2009-03-11 645916 NG_010147 19123937 +HGNC:35870 RPS11P3 ribosomal protein S11 pseudogene 3 pseudogene pseudogene Approved 1q21 01q21 2009-03-06 2009-03-11 100270898 NG_010264 19123937 +HGNC:35644 RPS11P4 ribosomal protein S11 pseudogene 4 pseudogene pseudogene Approved 9p21.1 09p21.1 2009-03-06 2009-03-11 100271052 NG_011054 19123937 +HGNC:36312 RPS11P5 ribosomal protein S11 pseudogene 5 pseudogene pseudogene Approved 12q24.33 12q24.33 2009-03-06 2009-03-11 727826 ENSG00000232888 OTTHUMG00000168024 NG_009555 19123937 +HGNC:36693 RPS11P6 ribosomal protein S11 pseudogene 6 pseudogene pseudogene Approved 12q14.2 12q14.2 2009-03-06 2009-03-11 729258 ENSG00000243024 OTTHUMG00000157605 NG_010888 19123937 +HGNC:36724 RPS11P7 ribosomal protein S11 pseudogene 7 pseudogene pseudogene Approved Xp11.4 Xp11.4 2009-03-06 2011-09-20 642687 ENSG00000214047 OTTHUMG00000021364 NG_011374 19123937 PGOHUM00000241715 +HGNC:10385 RPS12 ribosomal protein S12 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 S12 S ribosomal proteins 728 1991-12-02 2016-10-05 6206 ENSG00000112306 OTTHUMG00000015593 uc003qdx.4 X53505 NM_001016 CCDS5164 P25398 "1861993|9582194" MGI:98105 RGD:62024 RPS12 603660 +HGNC:19787 RPS12P1 ribosomal protein S12 pseudogene 1 pseudogene pseudogene Approved 14q24.2 14q24.2 2009-03-01 2014-11-19 326312 NG_002564 19123937 +HGNC:24221 RPS12P2 ribosomal protein S12 pseudogene 2 pseudogene pseudogene Approved 10q22.3 10q22.3 bA40F6.3 2009-03-01 2014-11-19 619448 ENSG00000234319 OTTHUMG00000018606 NG_009566 19123937 PGOHUM00000238561 +HGNC:35500 RPS12P3 ribosomal protein S12 pseudogene 3 pseudogene pseudogene Approved 2p16.1 02p16.1 2009-03-06 2009-03-11 344423 NG_010533 19123937 +HGNC:35670 RPS12P4 ribosomal protein S12 pseudogene 4 pseudogene pseudogene Approved 2p21 02p21 2009-03-06 2009-03-11 391370 NG_011048 19123937 RPS12P4 +HGNC:36525 RPS12P5 ribosomal protein S12 pseudogene 5 pseudogene pseudogene Approved 3p24.1 03p24.1 2009-03-06 2011-04-20 100271053 ENSG00000226216 OTTHUMG00000155733 NG_011058 19123937 PGOHUM00000237975 +HGNC:35790 RPS12P6 ribosomal protein S12 pseudogene 6 pseudogene pseudogene Approved 3p12 03p12 2009-03-06 2009-03-11 100271054 NG_011065 19123937 +HGNC:36699 RPS12P7 ribosomal protein S12 pseudogene 7 pseudogene pseudogene Approved 3q25.1 03q25.1 2009-03-06 2009-03-11 100271055 NG_011071 19123937 +HGNC:35945 RPS12P8 ribosomal protein S12 pseudogene 8 pseudogene pseudogene Approved 4q25 04q25 2009-03-06 2009-03-11 402184 NG_010010 19123937 +HGNC:36719 RPS12P9 ribosomal protein S12 pseudogene 9 pseudogene pseudogene Approved 4q13.1 04q13.1 2009-03-06 2009-03-11 727997 NG_007430 19123937 +HGNC:35824 RPS12P10 ribosomal protein S12 pseudogene 10 pseudogene pseudogene Approved 5q31.3 05q31.3 2009-03-06 2013-09-23 100271056 ENSG00000225147 OTTHUMG00000102185 NG_011078 19123937 PGOHUM00000235799 +HGNC:36042 RPS12P11 ribosomal protein S12 pseudogene 11 pseudogene pseudogene Approved 6q25.1 06q25.1 2009-03-06 2009-03-11 442270 NG_010833 19123937 +HGNC:36235 RPS12P12 ribosomal protein S12 pseudogene 12 pseudogene pseudogene Approved 6p22.3 06p22.3 2009-03-06 2009-03-11 100131761 NG_010922 19123937 +HGNC:36549 RPS12P13 ribosomal protein S12 pseudogene 13 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2009-03-11 100271057 NG_011081 19123937 +HGNC:35632 RPS12P14 ribosomal protein S12 pseudogene 14 pseudogene pseudogene Approved 6p12 06p12 2009-03-06 2009-03-11 100271058 NG_011085 19123937 +HGNC:35610 RPS12P15 ribosomal protein S12 pseudogene 15 pseudogene pseudogene Approved 8q22.3 08q22.3 2009-03-06 2009-03-11 100271059 ENSG00000240724 OTTHUMG00000158675 NG_011090 19123937 +HGNC:36595 RPS12P16 ribosomal protein S12 pseudogene 16 pseudogene pseudogene Approved 10p11.21 10p11.21 2009-03-06 2016-08-17 100271352 ENSG00000215184 OTTHUMG00000017944 NG_011286 19123937 PGOHUM00000289792 +HGNC:35705 RPS12P17 ribosomal protein S12 pseudogene 17 pseudogene pseudogene Approved 10q22.1 10q22.1 2009-03-06 2016-08-16 100271353 ENSG00000233163 OTTHUMG00000018368 NG_011290 19123937 PGOHUM00000289887 +HGNC:36421 RPS12P18 ribosomal protein S12 pseudogene 18 pseudogene pseudogene Approved 10q22.3 10q22.3 2009-03-06 2016-08-17 100271354 ENSG00000232965 OTTHUMG00000018567 NG_011294 19123937 PGOHUM00000290214 +HGNC:36187 RPS12P20 ribosomal protein S12 pseudogene 20 pseudogene pseudogene Approved 11q13.4 11q13.4 2009-03-06 2011-04-20 100271549 ENSG00000244134 OTTHUMG00000158404 NG_010973 19123937 PGOHUM00000242794 +HGNC:36464 RPS12P21 ribosomal protein S12 pseudogene 21 pseudogene pseudogene Approved 11q22 11q22 2009-03-06 2009-03-11 100271550 ENSG00000243930 OTTHUMG00000167158 NG_010980 19123937 +HGNC:35671 RPS12P22 ribosomal protein S12 pseudogene 22 pseudogene pseudogene Approved 11q13.4 11q13.4 2009-03-06 2009-03-11 440055 NG_011284 19123937 RPS12P22 +HGNC:35573 RPS12P23 ribosomal protein S12 pseudogene 23 pseudogene pseudogene Approved 13q12.11 13q12.11 2009-03-06 2010-11-24 338870 ENSG00000180172 OTTHUMG00000016529 NG_010945 19123937 PGOHUM00000248320 +HGNC:35561 RPS12P24 ribosomal protein S12 pseudogene 24 pseudogene pseudogene Approved 13q13.3 13q13.3 2009-03-06 2014-11-19 100271551 ENSG00000230283 OTTHUMG00000016749 NG_010988 19123937 +HGNC:36019 RPS12P25 ribosomal protein S12 pseudogene 25 pseudogene pseudogene Approved 15q25.1 15q25.1 2009-03-06 2009-03-11 646985 NG_010393 19123937 +HGNC:36320 RPS12P26 ribosomal protein S12 pseudogene 26 pseudogene pseudogene Approved 15q26.1 15q26.1 2009-03-06 2009-03-11 100130495 ENSG00000225193 OTTHUMG00000158056 NG_010991 19123937 +HGNC:35892 RPS12P27 ribosomal protein S12 pseudogene 27 pseudogene pseudogene Approved 16q22.1 16q22.1 2009-03-06 2009-03-11 100271552 ENSG00000240435 OTTHUMG00000158181 NG_010994 19123937 +HGNC:36972 RPS12P28 ribosomal protein S12 pseudogene 28 pseudogene pseudogene Approved 17p13.2 17p13.2 2009-03-06 2009-03-11 100271553 ENSG00000240494 OTTHUMG00000157763 NG_010999 19123937 +HGNC:36206 RPS12P29 ribosomal protein S12 pseudogene 29 pseudogene pseudogene Approved 17p13.2 17p13.2 2009-03-06 2009-03-11 728244 NG_010933 19123937 +HGNC:36813 RPS12P30 ribosomal protein S12 pseudogene 30 pseudogene pseudogene Approved 17q22 17q22 2009-03-06 2009-03-11 100271555 NG_011007 19123937 +HGNC:35578 RPS12P31 ribosomal protein S12 pseudogene 31 pseudogene pseudogene Approved 19q13.11 19q13.11 2009-03-06 2016-07-25 100130192 ENSG00000242325 OTTHUMG00000158146 NG_010757 19123937 PGOHUM00000295330 +HGNC:35571 RPS12P32 ribosomal protein S12 pseudogene 32 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2009-03-11 100271556 NG_011015 19123937 +HGNC:10386 RPS13 ribosomal protein S13 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 S13 40S ribosomal protein S13 S ribosomal proteins 728 1993-11-05 2016-10-05 6207 ENSG00000110700 OTTHUMG00000165988 uc001mmp.4 X79239 NM_001017 CCDS7823 P62277 "8332508|9582194" MGI:1915302 RGD:621027 RPS13 180476 +HGNC:36309 RPS13P1 ribosomal protein S13 pseudogene 1 pseudogene pseudogene Approved 1q24.1 01q24.1 2009-03-06 2009-03-11 100128305 NG_010259 19123937 +HGNC:36364 RPS13P2 ribosomal protein S13 pseudogene 2 pseudogene pseudogene Approved 1p32.3 01p32.3 2009-03-06 2014-04-24 729236 ENSG00000228929 OTTHUMG00000008921 NG_009715 19123937 PGOHUM00000244031 +HGNC:36866 RPS13P3 ribosomal protein S13 pseudogene 3 pseudogene pseudogene Approved 2p21 02p21 2009-03-06 2009-03-11 100129718 NG_010948 19123937 +HGNC:35731 RPS13P4 ribosomal protein S13 pseudogene 4 pseudogene pseudogene Approved 2p23.3 02p23.3 2009-03-06 2009-03-11 100271060 NG_011093 19123937 +HGNC:36610 RPS13P5 ribosomal protein S13 pseudogene 5 pseudogene pseudogene Approved 2p23.3 02p23.3 2009-03-06 2009-03-11 100271061 NG_011097 19123937 +HGNC:35653 RPS13P6 ribosomal protein S13 pseudogene 6 pseudogene pseudogene Approved 5q31 05q31 2009-03-06 2009-03-11 100271062 NG_011104 19123937 +HGNC:36310 RPS13P7 ribosomal protein S13 pseudogene 7 pseudogene pseudogene Approved 15q21.3 15q21.3 2009-03-06 2009-03-11 645918 NG_011355 19123937 +HGNC:36400 RPS13P8 ribosomal protein S13 pseudogene 8 pseudogene pseudogene Approved 15q21.2 15q21.2 2009-03-06 2009-03-11 645630 NG_011321 19123937 +HGNC:10387 RPS14 ribosomal protein S14 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "EMTB|S14" "emetine resistance|40S ribosomal protein S14" S ribosomal proteins 728 2001-06-22 2016-10-05 6208 ENSG00000164587 OTTHUMG00000130080 uc003lsi.4 NM_001025071 CCDS4307 P62263 "3785212|1549121" MGI:98107 RGD:62025 RPS14 130620 168342 +HGNC:35572 RPS14P1 ribosomal protein S14 pseudogene 1 pseudogene pseudogene Approved 1q32 01q32 2009-03-06 2009-03-11 100271063 NG_011111 19123937 +HGNC:36080 RPS14P2 ribosomal protein S14 pseudogene 2 pseudogene pseudogene Approved 1q24 01q24 2009-03-06 2009-03-11 100271064 NG_011116 19123937 +HGNC:35797 RPS14P3 ribosomal protein S14 pseudogene 3 pseudogene pseudogene Approved 1p36.13 01p36.13 2009-03-06 2009-03-11 644068 NG_011176 19123937 +HGNC:36419 RPS14P4 ribosomal protein S14 pseudogene 4 pseudogene pseudogene Approved 2q13 02q13 2009-03-06 2013-07-02 100132382 ENSG00000226928 OTTHUMG00000153699 NG_010162 19123937 PGOHUM00000240255 +HGNC:36087 RPS14P5 ribosomal protein S14 pseudogene 5 pseudogene pseudogene Approved 2p11.2 02p11.2 2009-03-06 2009-03-11 100133255 NG_010706 19123937 +HGNC:36241 RPS14P6 ribosomal protein S14 pseudogene 6 pseudogene pseudogene Approved 4q31.3 04q31.3 2009-03-06 2009-03-11 646737 NG_010435 19123937 +HGNC:36961 RPS14P7 ribosomal protein S14 pseudogene 7 pseudogene pseudogene Approved 4q32.2 04q32.2 2009-03-06 2016-10-05 100271065 ENSG00000242635 OTTHUMG00000157592 NG_011119 19123937 PGOHUM00000246121 +HGNC:37027 RPS14P8 ribosomal protein S14 pseudogene 8 pseudogene pseudogene Approved 5q23.1 05q23.1 2009-03-06 2014-07-29 644146 ENSG00000239528 OTTHUMG00000157827 NG_010268 19123937 PGOHUM00000301097 +HGNC:36286 RPS14P9 ribosomal protein S14 pseudogene 9 pseudogene pseudogene Approved 6q15 06q15 2009-03-06 2009-03-11 644119 NG_009572 19123937 +HGNC:35517 RPS14P10 ribosomal protein S14 pseudogene 10 pseudogene pseudogene Approved 7q32.3 07q32.3 2009-03-06 2009-03-11 647034 NG_006544 19123937 +HGNC:10388 RPS15 ribosomal protein S15 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "RIG|MGC111130|S15" "40S ribosomal protein S15|homolog of rat insulinoma|insulinoma protein" S ribosomal proteins 728 1992-04-16 2014-11-19 6209 ENSG00000115268 OTTHUMG00000140099 uc060rbb.1 NM_001018 "CCDS12067|CCDS77210" P62841 2159154 MGI:98117 RGD:62026 RPS15 180535 451578 +HGNC:10389 RPS15A ribosomal protein S15a protein-coding gene gene with protein product Approved 16p12.3 16p12.3 S15A S ribosomal proteins 728 1998-08-18 2014-11-18 6210 ENSG00000134419 OTTHUMG00000131365 uc002dfh.2 AB007154 NM_001019 CCDS10571 P62244 9582194 MGI:2389091 RGD:619939 RPS15A 603674 +HGNC:16598 RPS15AP1 ribosomal protein S15a pseudogene 1 pseudogene pseudogene Approved 20p11.23 20p11.23 dJ872K7.6 2009-03-01 2014-11-19 92682 ENSG00000214535 OTTHUMG00000032016 NG_000951 19123937 PGOHUM00000247461 +HGNC:19671 RPS15AP2 ribosomal protein S15a pseudogene 2 pseudogene pseudogene Approved 14q22.1 14q22.1 2009-03-01 2014-11-19 326316 NG_002566 19123937 +HGNC:19674 RPS15AP3 ribosomal protein S15a pseudogene 3 pseudogene pseudogene Approved 14q21.3 14q21.3 2009-03-01 2014-11-18 326317 ENSG00000214903 OTTHUMG00000157887 NG_002567 19123937 +HGNC:23559 RPS15AP4 ribosomal protein S15a pseudogene 4 pseudogene pseudogene Approved 14q23.1 14q23.1 2009-03-01 2014-11-19 654371 AL049874 NG_009527 19123937 +HGNC:23743 RPS15AP5 ribosomal protein S15a pseudogene 5 pseudogene pseudogene Approved 10q26.13 10q26.13 Em:AC025947.3 2009-03-01 2014-11-19 414230 ENSG00000223540 OTTHUMG00000019176 NG_009526 19123937 PGOHUM00000238942 +HGNC:35657 RPS15AP6 ribosomal protein S15a pseudogene 6 pseudogene pseudogene Approved 1p36.12 01p36.12 2009-03-06 2013-07-31 100271141 ENSG00000233072 OTTHUMG00000002778 NG_010197 19123937 PGOHUM00000243925 +HGNC:35648 RPS15AP7 ribosomal protein S15a pseudogene 7 pseudogene pseudogene Approved 1p31.3 01p31.3 2009-03-06 2013-07-31 100271142 ENSG00000234088 OTTHUMG00000008912 NG_010203 19123937 PGOHUM00000244741 +HGNC:36887 RPS15AP8 ribosomal protein S15a pseudogene 8 pseudogene pseudogene Approved 1p34.2 01p34.2 2009-03-06 2009-03-11 100271143 NG_010208 19123937 +HGNC:36164 RPS15AP9 ribosomal protein S15a pseudogene 9 pseudogene pseudogene Approved 1p13.1 01p13.1 2009-03-06 2013-07-31 441898 ENSG00000228453 OTTHUMG00000012117 NG_006958 19123937 PGOHUM00000244867 +HGNC:37001 RPS15AP10 ribosomal protein S15a pseudogene 10 pseudogene pseudogene Approved 1p34.1 01p34.1 2009-03-06 2011-09-30 728963 ENSG00000225447 OTTHUMG00000040992 NR_026768 19123937 PGOHUM00000244002 +HGNC:36707 RPS15AP11 ribosomal protein S15a pseudogene 11 pseudogene pseudogene Approved 1p34.1 01p34.1 2009-03-06 2013-07-31 644790 ENSG00000234093 OTTHUMG00000008492 NG_010947 19123937 PGOHUM00000243997 +HGNC:36759 RPS15AP12 ribosomal protein S15a pseudogene 12 pseudogene pseudogene Approved 1q41 01q41 2009-03-06 2013-07-31 100129243 ENSG00000232134 OTTHUMG00000037437 NG_011132 19123937 PGOHUM00000244425 +HGNC:36774 RPS15AP13 ribosomal protein S15a pseudogene 13 pseudogene pseudogene Approved 2p13.3 02p13.3 2009-03-06 2009-03-11 100128605 NG_010488 19123937 +HGNC:36629 RPS15AP14 ribosomal protein S15a pseudogene 14 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2009-03-11 100127924 NG_009584 19123937 +HGNC:35640 RPS15AP15 ribosomal protein S15a pseudogene 15 pseudogene pseudogene Approved 2p14 02p14 2009-03-06 2009-03-11 100130782 NG_011150 19123937 +HGNC:36764 RPS15AP16 ribosomal protein S15a pseudogene 16 pseudogene pseudogene Approved 3q21.3 03q21.3 2009-03-06 2009-03-11 100271358 ENSG00000239483 OTTHUMG00000157372 NG_011319 19123937 +HGNC:36888 RPS15AP17 ribosomal protein S15a pseudogene 17 pseudogene pseudogene Approved 4q13.1 04q13.1 2009-03-06 2014-05-22 391656 ENSG00000225405 OTTHUMG00000157485 NG_011197 19123937 PGOHUM00000250713 +HGNC:36524 RPS15AP18 ribosomal protein S15a pseudogene 18 pseudogene pseudogene Approved 5q35.3 05q35.3 2009-03-06 2009-03-11 100271360 ENSG00000242979 OTTHUMG00000157956 NG_009955 19123937 +HGNC:36603 RPS15AP19 ribosomal protein S15a pseudogene 19 pseudogene pseudogene Approved 6p21.31 06p21.31 2009-03-06 2009-03-11 646819 NG_010854 19123937 +HGNC:36391 RPS15AP20 ribosomal protein S15a pseudogene 20 pseudogene pseudogene Approved 6p12.2 06p12.2 2009-03-06 2009-03-11 647155 NG_011260 19123937 +HGNC:36142 RPS15AP21 ribosomal protein S15a pseudogene 21 pseudogene pseudogene Approved 6q22.31 06q22.31 2009-03-06 2009-03-11 100271357 NG_011313 19123937 +HGNC:36305 RPS15AP22 ribosomal protein S15a pseudogene 22 pseudogene pseudogene Approved 7q32.3 07q32.3 2009-03-06 2009-03-11 100271557 NG_011019 19123937 +HGNC:36718 RPS15AP23 ribosomal protein S15a pseudogene 23 pseudogene pseudogene Approved 7q31 07q31 2009-03-06 2009-03-11 100271558 NG_011024 19123937 +HGNC:36174 RPS15AP24 ribosomal protein S15a pseudogene 24 pseudogene pseudogene Approved 8p12 08p12 2009-03-06 2009-03-11 648729 ENSG00000241511 OTTHUMG00000158590 NG_010125 19123937 +HGNC:36848 RPS15AP25 ribosomal protein S15a pseudogene 25 pseudogene pseudogene Approved 8q13.2 08q13.2 2009-03-06 2009-03-11 728774 ENSG00000236191 OTTHUMG00000158623 NG_011025 19123937 +HGNC:36773 RPS15AP26 ribosomal protein S15a pseudogene 26 pseudogene pseudogene Approved 8q22.1 08q22.1 2009-03-06 2009-03-11 100271359 NG_011324 19123937 +HGNC:37011 RPS15AP27 ribosomal protein S15a pseudogene 27 pseudogene pseudogene Approved 9q31.2 09q31.2 2009-03-06 2013-09-23 100271613 ENSG00000236783 OTTHUMG00000020456 NG_011314 19123937 PGOHUM00000236304 +HGNC:36381 RPS15AP28 ribosomal protein S15a pseudogene 28 pseudogene pseudogene Approved 10q22.1 10q22.1 2009-03-06 2016-08-16 100132400 ENSG00000229197 OTTHUMG00000018374 NG_011361 19123937 PGOHUM00000289888 +HGNC:35981 RPS15AP29 ribosomal protein S15a pseudogene 29 pseudogene pseudogene Approved 10q24.33 10q24.33 2009-03-06 2016-08-16 100128863 ENSG00000237827 OTTHUMG00000018977 NG_010495 19123937 PGOHUM00000289985 +HGNC:35495 RPS15AP30 ribosomal protein S15a pseudogene 30 pseudogene pseudogene Approved 10q25.2 10q25.2 2009-03-06 2016-08-16 100271607 ENSG00000227560 OTTHUMG00000019068 NG_011280 19123937 PGOHUM00000290285 +HGNC:36960 RPS15AP31 ribosomal protein S15a pseudogene 31 pseudogene pseudogene Approved 11p14.1 11p14.1 2009-03-06 2009-03-11 100271652 NG_010192 19123937 +HGNC:35879 RPS15AP32 ribosomal protein S15a pseudogene 32 pseudogene pseudogene Approved 12q24.13 12q24.13 2009-03-06 2009-03-11 100271649 ENSG00000242461 OTTHUMG00000157740 NG_010178 19123937 +HGNC:36178 RPS15AP33 ribosomal protein S15a pseudogene 33 pseudogene pseudogene Approved 16p11 16p11 2009-03-06 2009-03-11 100271654 NG_010204 19123937 +HGNC:35609 RPS15AP34 ribosomal protein S15a pseudogene 34 pseudogene pseudogene Approved 16q21 16q21 2009-03-06 2009-03-11 390735 ENSG00000241808 OTTHUMG00000158177 NG_010426 19123937 +HGNC:36768 RPS15AP35 ribosomal protein S15a pseudogene 35 pseudogene pseudogene Approved 18q12.1 18q12.1 2009-03-06 2009-03-11 390848 NG_010996 19123937 +HGNC:36803 RPS15AP36 ribosomal protein S15a pseudogene 36 pseudogene pseudogene Approved 19q13.43 19q13.43 2009-03-06 2013-09-19 100271650 ENSG00000213013 OTTHUMG00000158336 NG_010183 19123937 PGOHUM00000234821 +HGNC:36173 RPS15AP37 ribosomal protein S15a pseudogene 37 pseudogene pseudogene Approved 22q12.2 22q12.2 2009-03-06 2009-03-11 100271651 NG_010187 19123937 +HGNC:36523 RPS15AP38 ribosomal protein S15a pseudogene 38 pseudogene pseudogene Approved 22q12.3 22q12.3 2009-03-06 2013-09-23 100271655 ENSG00000237668 OTTHUMG00000150595 NG_010210 19123937 PGOHUM00000246327 +HGNC:35800 RPS15AP39 ribosomal protein S15a pseudogene 39 pseudogene pseudogene Approved Xp11.4 Xp11.4 2009-03-06 2009-03-11 100129284 NG_009981 19123937 +HGNC:36041 RPS15AP40 ribosomal protein S15a pseudogene 40 pseudogene pseudogene Approved Xp21.1 Xp21.1 2009-03-06 2014-11-19 100128083 ENSG00000233921 OTTHUMG00000021355 NG_010442 19123937 PGOHUM00000241231 +HGNC:35725 RPS15P1 ribosomal protein S15 pseudogene 1 pseudogene pseudogene Approved 1p13.2 01p13.2 2009-03-06 2009-03-11 728428 NG_010559 19123937 +HGNC:10390 RPS15P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:36033 RPS15P2 ribosomal protein S15 pseudogene 2 pseudogene pseudogene Approved 1q42.2 01q42.2 2009-03-06 2009-03-11 100271066 NG_011122 19123937 +HGNC:10391 RPS15P2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:35563 RPS15P3 ribosomal protein S15 pseudogene 3 pseudogene pseudogene Approved 1q24.3 01q24.3 2009-03-06 2009-03-11 391137 NG_011163 19123937 +HGNC:10392 RPS15P3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:35712 RPS15P4 ribosomal protein S15 pseudogene 4 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2009-03-11 401019 NG_005983 19123937 RPS15P4 +HGNC:10393 RPS15P4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:35536 RPS15P5 ribosomal protein S15 pseudogene 5 pseudogene pseudogene Approved 3p14.3 03p14.3 2009-03-06 2011-07-28 729789 ENSG00000229806 OTTHUMG00000157295 NG_010976 19123937 PGOHUM00000238042 +HGNC:10394 RPS15P5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:36653 RPS15P6 ribosomal protein S15 pseudogene 6 pseudogene pseudogene Approved 5q34 05q34 2009-03-06 2009-03-11 391845 NG_010863 19123937 +HGNC:10395 RPS15P6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:36623 RPS15P7 ribosomal protein S15 pseudogene 7 pseudogene pseudogene Approved 12p13 12p13 2009-03-06 2009-03-11 100271361 NG_009960 19123937 +HGNC:35847 RPS15P8 ribosomal protein S15 pseudogene 8 pseudogene pseudogene Approved 15q14 15q14 2009-03-06 2009-03-11 390576 NG_010918 19123937 +HGNC:36440 RPS15P9 ribosomal protein S15 pseudogene 9 pseudogene pseudogene Approved 19p13.3 19p13.3 2009-03-06 2016-07-25 401895 ENSG00000240846 OTTHUMG00000157966 NG_011189 19123937 PGOHUM00000294837 +HGNC:10396 RPS16 ribosomal protein S16 protein-coding gene gene with protein product Approved 19q13.1 19q13.1 S16 40S ribosomal protein S16 S ribosomal proteins 728 1991-08-07 2014-11-19 6217 ENSG00000105193 OTTHUMG00000182972 uc002olk.4 M60854 NM_001020 "CCDS12535|CCDS82349" P62249 "2016298|9582194" MGI:98118 RGD:621031 RPS16 603675 +HGNC:36462 RPS16P1 ribosomal protein S16 pseudogene 1 pseudogene pseudogene Approved 1p36.21 01p36.21 2009-03-06 2009-03-11 441876 NG_010091 19123937 +HGNC:35928 RPS16P2 ribosomal protein S16 pseudogene 2 pseudogene pseudogene Approved 2p24.1 02p24.1 2009-03-06 2009-03-11 402069 NG_010786 19123937 +HGNC:35986 RPS16P3 ribosomal protein S16 pseudogene 3 pseudogene pseudogene Approved 2q21.2 02q21.2 2009-03-06 2009-03-11 100271067 NG_011126 19123937 +HGNC:36502 RPS16P4 ribosomal protein S16 pseudogene 4 pseudogene pseudogene Approved 3p22 03p22 2009-03-06 2009-03-11 100271068 NG_011135 19123937 +HGNC:36183 RPS16P5 ribosomal protein S16 pseudogene 5 pseudogene pseudogene Approved 6p12.1 06p12.1 2009-03-06 2015-02-02 647190 ENSG00000217527 OTTHUMG00000014875 NG_010106 19123937 PGOHUM00000301388 +HGNC:36741 RPS16P6 ribosomal protein S16 pseudogene 6 pseudogene pseudogene Approved 11q13 11q13 2009-03-06 2009-03-11 100271362 NG_009966 19123937 +HGNC:36505 RPS16P7 ribosomal protein S16 pseudogene 7 pseudogene pseudogene Approved 16p13.3 16p13.3 2009-03-06 2009-03-11 441744 NG_010756 19123937 +HGNC:35608 RPS16P8 ribosomal protein S16 pseudogene 8 pseudogene pseudogene Approved 17q11.1 17q11.1 2009-03-06 2009-03-11 654170 ENSG00000213664 OTTHUMG00000157757 NG_010473 19123937 +HGNC:35659 RPS16P9 ribosomal protein S16 pseudogene 9 pseudogene pseudogene Approved 19q13.32 19q13.32 2009-03-06 2016-07-25 645412 ENSG00000242675 OTTHUMG00000158202 NG_010193 19123937 PGOHUM00000295048 +HGNC:35739 RPS16P10 ribosomal protein S16 pseudogene 10 pseudogene pseudogene Approved 19p12 19p12 2009-03-06 2009-03-11 729903 NG_009607 19123937 +HGNC:10397 RPS17 ribosomal protein S17 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "RPS17L1|RPS17L2|MGC72007|S17" RPS17L ribosomal protein S17-like S ribosomal proteins 728 1991-11-29 2014-11-19 6218 ENSG00000182774 OTTHUMG00000147355 uc002bhr.2 M18000 NM_001021 CCDS10320 P08708 "1577483|7661859" MGI:1309526 RGD:62027 Diamond-Blackfan Anemia|http://www.dbagenes.unito.it/home.php?select_db=RPS17 RPS17 180472 158382 +HGNC:10400 RPS17L3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:13982 RPS17P1 ribosomal protein S17 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "RPS17p|dJ994E9.1" 2009-03-01 2014-11-18 442195 ENSG00000213900 OTTHUMG00000031086 NG_008917 19123937 +HGNC:10398 RPS17P2 ribosomal protein S17 pseudogene 2 pseudogene pseudogene Approved 5q23.1 05q23.1 "RPS17L1|RPS17A" ribosomal protein S17a-like 1 (pseudogene) 2009-03-01 2001-12-14 2001-12-05 2014-11-19 6219 ENSG00000197575 OTTHUMG00000157828 NG_003033 "3459254|3240863|19123937" +HGNC:10399 RPS17P3 ribosomal protein S17 pseudogene 3 pseudogene pseudogene Approved 17q11.2 17q11.2 "RPS17L2|RPS17B" ribosomal protein S17b-like 2 (pseudogene) 2009-03-01 2001-12-14 2001-12-17 2014-11-18 646013 NG_009636 19123937 +HGNC:19430 RPS17P4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-01-23 +HGNC:21352 RPS17P5 ribosomal protein S17 pseudogene 5 pseudogene pseudogene Approved 6p12.3 06p12.3 dJ753D5.2 RPS17L4 ribosomal protein S17-like 4 2009-03-01 2009-01-23 2009-01-23 2014-11-18 442216 ENSG00000060303 OTTHUMG00000014833 NG_005089 19123937 +HGNC:36945 RPS17P6 ribosomal protein S17 pseudogene 6 pseudogene pseudogene Approved 1q24.1 01q24.1 2009-03-06 2009-03-11 391130 NG_011125 19123937 +HGNC:35796 RPS17P7 ribosomal protein S17 pseudogene 7 pseudogene pseudogene Approved 2q14 02q14 2009-03-06 2009-03-11 100271069 NG_011141 19123937 +HGNC:36772 RPS17P8 ribosomal protein S17 pseudogene 8 pseudogene pseudogene Approved 2q32.3 02q32.3 2009-03-06 2012-10-12 100271070 ENSG00000226242 NG_011147 19123937 PGOHUM00000241048 +HGNC:36160 RPS17P9 ribosomal protein S17 pseudogene 9 pseudogene pseudogene Approved 3q21.3 03q21.3 2009-03-06 2009-03-11 100130823 NG_010005 19123937 +HGNC:36438 RPS17P10 ribosomal protein S17 pseudogene 10 pseudogene pseudogene Approved 3q24 03q24 2009-03-06 2009-03-11 100271071 NG_011152 19123937 +HGNC:36132 RPS17P11 ribosomal protein S17 pseudogene 11 pseudogene pseudogene Approved 5q11.2 05q11.2 2009-03-06 2013-09-23 100271072 ENSG00000244621 OTTHUMG00000157683 NG_011156 19123937 PGOHUM00000235583 +HGNC:35930 RPS17P12 ribosomal protein S17 pseudogene 12 pseudogene pseudogene Approved 7q34 07q34 2009-03-06 2009-03-11 442726 NG_009855 19123937 +HGNC:36664 RPS17P13 ribosomal protein S17 pseudogene 13 pseudogene pseudogene Approved 7p14.1 07p14.1 2009-03-06 2016-10-05 100271073 ENSG00000224706 OTTHUMG00000154989 NG_011159 19123937 PGOHUM00000250929 +HGNC:35534 RPS17P14 ribosomal protein S17 pseudogene 14 pseudogene pseudogene Approved 8q23.1 08q23.1 2009-03-06 2009-03-11 100271074 ENSG00000243287 OTTHUMG00000158682 NG_011164 19123937 +HGNC:35931 RPS17P15 ribosomal protein S17 pseudogene 15 pseudogene pseudogene Approved 11q23.1 11q23.1 2009-03-06 2013-09-23 100271363 ENSG00000239354 OTTHUMG00000158454 NG_009973 19123937 PGOHUM00000242480 +HGNC:36821 RPS17P16 ribosomal protein S17 pseudogene 16 pseudogene pseudogene Approved 22q12.3 22q12.3 2009-03-06 2009-03-11 402057 NG_010713 19123937 +HGNC:35647 RPS17P17 ribosomal protein S17 pseudogene 17 pseudogene pseudogene Approved Xq27.1 Xq27.1 2009-03-06 2011-09-20 100271230 ENSG00000225758 OTTHUMG00000022546 NG_010652 19123937 PGOHUM00000241576 +HGNC:10401 RPS18 ribosomal protein S18 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "KE3|KE-3|HKE3|S18" D6S218E S ribosomal proteins 728 1993-06-23 2016-10-05 6222 ENSG00000231500 OTTHUMG00000031053 uc063zkv.1 X69150 NM_022551 CCDS4771 P62269 "8441687|9582194" MGI:98146 RGD:3595 RPS18 180473 +HGNC:16550 RPS18P1 ribosomal protein S18 pseudogene 1 pseudogene pseudogene Approved 20p12.3 20p12.3 dJ1022P6.1 2009-03-01 2016-07-22 128676 ENSG00000225831 OTTHUMG00000031811 AL109935 NG_000970 19123937 PGOHUM00000297041 +HGNC:19801 RPS18P2 ribosomal protein S18 pseudogene 2 pseudogene pseudogene Approved 14q32.11 14q32.11 2009-03-01 2014-11-19 326320 NG_002570 19123937 +HGNC:36198 RPS18P3 ribosomal protein S18 pseudogene 3 pseudogene pseudogene Approved 1q42.13 01q42.13 2009-03-06 2009-03-11 100128258 NG_009969 19123937 +HGNC:36952 RPS18P4 ribosomal protein S18 pseudogene 4 pseudogene pseudogene Approved 1q24 01q24 2009-03-06 2009-03-11 100271075 NG_011169 19123937 +HGNC:36287 RPS18P5 ribosomal protein S18 pseudogene 5 pseudogene pseudogene Approved 3q12.3 03q12.3 2009-03-06 2009-03-11 100131863 NG_010113 19123937 +HGNC:36028 RPS18P6 ribosomal protein S18 pseudogene 6 pseudogene pseudogene Approved 3q11.2 03q11.2 2009-03-06 2013-09-23 100271076 ENSG00000244048 OTTHUMG00000157329 NG_011173 19123937 PGOHUM00000238097 +HGNC:35874 RPS18P7 ribosomal protein S18 pseudogene 7 pseudogene pseudogene Approved 5q14.3 05q14.3 2009-03-06 2009-03-11 133790 NG_010832 19123937 +HGNC:35956 RPS18P8 ribosomal protein S18 pseudogene 8 pseudogene pseudogene Approved 6p25.1 06p25.1 2009-03-06 2009-03-11 643627 NG_011359 19123937 +HGNC:36483 RPS18P9 ribosomal protein S18 pseudogene 9 pseudogene pseudogene Approved 6q25.1 06q25.1 2009-03-06 2011-02-09 645958 ENSG00000220848 OTTHUMG00000015790 NG_010375 19123937 PGOHUM00000243812 +HGNC:35566 RPS18P10 ribosomal protein S18 pseudogene 10 pseudogene pseudogene Approved 6q24.1 06q24.1 2009-03-06 2009-03-11 729293 NG_011382 19123937 +HGNC:36319 RPS18P11 ribosomal protein S18 pseudogene 11 pseudogene pseudogene Approved 8q13.3 08q13.3 2009-03-06 2009-03-11 100271077 NG_011179 19123937 +HGNC:35967 RPS18P12 ribosomal protein S18 pseudogene 12 pseudogene pseudogene Approved 17p12 17p12 2009-03-06 2009-03-11 388339 ENSG00000230897 OTTHUMG00000058815 NG_011261 19123937 +HGNC:36901 RPS18P13 ribosomal protein S18 pseudogene 13 pseudogene pseudogene Approved 19p13.11 19p13.11 2009-03-06 2016-07-25 100271364 ENSG00000243455 OTTHUMG00000158043 NG_009978 19123937 PGOHUM00000295229 +HGNC:36386 RPS18P14 ribosomal protein S18 pseudogene 14 pseudogene pseudogene Approved 22q12.2 22q12.2 2009-03-06 2009-03-11 100128535 NG_010112 19123937 +HGNC:10402 RPS19 ribosomal protein S19 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "DBA|S19" Diamond-Blackfan anemia S ribosomal proteins 728 1998-07-22 2014-11-18 6223 ENSG00000105372 OTTHUMG00000182676 uc002ort.4 BC000023 NM_001022 CCDS12588 P39019 9582194 MGI:1333780 RGD:68440 Diamond-Blackfan Anemia|http://www.dbagenes.unito.it/home.php?select_db=RPS19 RPS19 603474 118400 +HGNC:28749 RPS19BP1 ribosomal protein S19 binding protein 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "MGC52010|FLJ21770" 2006-02-14 2014-11-19 91582 ENSG00000187051 OTTHUMG00000151101 uc003ayb.3 BC037573 NM_194326 CCDS13997 Q86WX3 16289379 MGI:1913788 RGD:1562823 RPS19BP1 610225 +HGNC:16534 RPS19P1 ribosomal protein S19 pseudogene 1 pseudogene pseudogene Approved 20p11.23 20p11.23 bA189K21.7 ribosomal protein S19 psuedogene 1 2009-03-01 2002-10-22 2016-07-22 85486 ENSG00000214612 OTTHUMG00000031973 AF242191 NG_001295 "10753603|19123937" PGOHUM00000297062 +HGNC:17047 RPS19P2 ribosomal protein S19 pseudogene 2 pseudogene pseudogene Approved 1p13.2 01p13.2 2009-03-01 2014-11-18 85487 AF242192 NG_001296 "10753603|19123937" +HGNC:23560 RPS19P3 ribosomal protein S19 pseudogene 3 pseudogene pseudogene Approved 14q13.1 14q13.1 2009-03-01 2014-11-18 728953 ENSG00000240463 OTTHUMG00000157732 AL445363 NG_009541 19123937 PGOHUM00000247764 +HGNC:35778 RPS19P4 ribosomal protein S19 pseudogene 4 pseudogene pseudogene Approved 5q11.2 05q11.2 2009-03-06 2009-03-11 100132049 NG_011084 19123937 +HGNC:35850 RPS19P5 ribosomal protein S19 pseudogene 5 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2009-03-11 100131286 NG_011109 19123937 +HGNC:36217 RPS19P6 ribosomal protein S19 pseudogene 6 pseudogene pseudogene Approved 9q21.31 09q21.31 2009-03-06 2013-09-23 100271078 ENSG00000234637 OTTHUMG00000020079 NG_011181 19123937 PGOHUM00000236227 +HGNC:35550 RPS19P7 ribosomal protein S19 pseudogene 7 pseudogene pseudogene Approved 10q11.21 10q11.21 2009-03-06 2016-08-16 728509 ENSG00000228462 OTTHUMG00000018070 NG_010974 19123937 PGOHUM00000289829 +HGNC:10405 RPS20 ribosomal protein S20 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 S20 S ribosomal proteins 728 1998-08-18 2015-08-25 6224 ENSG00000008988 OTTHUMG00000164297 uc003xsn.3 L06498 NM_001023 "CCDS6163|CCDS55231" P60866 "9582194|8479924" MGI:1914677 RGD:621037 RPS20 603682 414935 +HGNC:10408 RPS20P1 ribosomal protein S20 pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 RPS20P ribosomal protein S20, pseudogene 2009-03-01 2001-12-14 2001-12-07 2014-11-18 54025 ENSG00000229761 OTTHUMG00000086461 NG_000906 19123937 PGOHUM00000239073 +HGNC:14195 RPS20P2 ribosomal protein S20 pseudogene 2 pseudogene pseudogene Approved 16p13.3 16p13.3 2000-12-21 2009-01-23 64726 ENSG00000219274 OTTHUMG00000047844 NG_009635 +HGNC:10406 RPS20P3 ribosomal protein S20 pseudogene 3 pseudogene pseudogene Approved 5q21.3 05q21.3 RPS20A ribosomal protein S20A (gene or pseudogene) 2009-03-01 2001-12-14 2001-12-10 2014-11-18 6225 NG_003034 "3459254|19123937" 180463 +HGNC:10407 RPS20P4 ribosomal protein S20 pseudogene 4 pseudogene pseudogene Approved 5q32 05q32 RPS20B ribosomal protein S20B (gene or pseudogene) 2009-03-01 2001-12-14 2001-12-10 2014-11-19 6226 ENSG00000241907 OTTHUMG00000157903 NG_003035 19123937 180464 PGOHUM00000235423 +HGNC:36367 RPS20P5 ribosomal protein S20 pseudogene 5 pseudogene pseudogene Approved 1p32.2 01p32.2 2009-03-06 2013-12-03 100270899 ENSG00000236888 OTTHUMG00000010066 NG_010270 19123937 PGOHUM00000244043 +HGNC:35629 RPS20P6 ribosomal protein S20 pseudogene 6 pseudogene pseudogene Approved 1p21 01p21 2009-03-06 2009-03-11 100270900 NG_010273 19123937 +HGNC:35911 RPS20P7 ribosomal protein S20 pseudogene 7 pseudogene pseudogene Approved 1p31.1 01p31.1 2009-03-06 2009-03-11 100270901 NG_010277 19123937 +HGNC:35770 RPS20P8 ribosomal protein S20 pseudogene 8 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 100271079 NG_011187 19123937 +HGNC:36472 RPS20P9 ribosomal protein S20 pseudogene 9 pseudogene pseudogene Approved 2p15 02p15 2009-03-06 2009-03-11 100271080 NG_011191 19123937 +HGNC:36800 RPS20P10 ribosomal protein S20 pseudogene 10 pseudogene pseudogene Approved 2p13.2 02p13.2 2009-03-06 2013-09-23 100271081 ENSG00000233971 OTTHUMG00000152716 NG_011200 19123937 PGOHUM00000240091 +HGNC:36084 RPS20P11 ribosomal protein S20 pseudogene 11 pseudogene pseudogene Approved 2q13 02q13 2009-03-06 2009-03-11 100271082 NG_011209 19123937 +HGNC:36519 RPS20P12 ribosomal protein S20 pseudogene 12 pseudogene pseudogene Approved 2q37.1 02q37.1 2009-03-06 2009-03-11 100271083 NG_011214 19123937 +HGNC:36071 RPS20P13 ribosomal protein S20 pseudogene 13 pseudogene pseudogene Approved 2q22.3 02q22.3 2009-03-06 2009-03-11 100271084 NG_011218 19123937 +HGNC:36692 RPS20P14 ribosomal protein S20 pseudogene 14 pseudogene pseudogene Approved 3q27.3 03q27.3 2009-03-06 2012-08-09 440992 ENSG00000223803 OTTHUMG00000156517 NG_005532 19123937 RPS20P14 PGOHUM00000238297 +HGNC:36340 RPS20P15 ribosomal protein S20 pseudogene 15 pseudogene pseudogene Approved 3p24.1 03p24.1 2009-03-06 2016-10-05 100271085 ENSG00000227523 OTTHUMG00000155689 NG_011227 19123937 PGOHUM00000237969 +HGNC:35851 RPS20P16 ribosomal protein S20 pseudogene 16 pseudogene pseudogene Approved 5q15 05q15 2009-03-06 2009-03-11 100271086 NG_011233 19123937 +HGNC:35822 RPS20P17 ribosomal protein S20 pseudogene 17 pseudogene pseudogene Approved 5q35.3 05q35.3 2009-03-06 2009-03-11 100271088 NG_011240 19123937 +HGNC:36937 RPS20P18 ribosomal protein S20 pseudogene 18 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2009-03-11 100271231 NG_010657 19123937 +HGNC:36503 RPS20P19 ribosomal protein S20 pseudogene 19 pseudogene pseudogene Approved 7q36.1 07q36.1 2009-03-06 2009-03-11 644309 NG_011101 19123937 +HGNC:36674 RPS20P20 ribosomal protein S20 pseudogene 20 pseudogene pseudogene Approved 8q13.3 08q13.3 2009-03-06 2013-06-07 100271233 ENSG00000241942 OTTHUMG00000158627 NG_010667 19123937 PGOHUM00000249709 +HGNC:35993 RPS20P21 ribosomal protein S20 pseudogene 21 pseudogene pseudogene Approved 8q21.11 08q21.11 2009-03-06 2009-03-11 100271234 ENSG00000244295 OTTHUMG00000158629 NG_010674 19123937 +HGNC:36379 RPS20P22 ribosomal protein S20 pseudogene 22 pseudogene pseudogene Approved 8p11.23 08p11.23 2009-03-06 2011-07-29 100271087 ENSG00000239218 OTTHUMG00000158605 NG_011236 19123937 PGOHUM00000249300 +HGNC:36146 RPS20P23 ribosomal protein S20 pseudogene 23 pseudogene pseudogene Approved 8q22.3 08q22.3 2009-03-06 2013-09-23 100271089 ENSG00000242399 OTTHUMG00000158672 NG_011244 19123937 PGOHUM00000249458 +HGNC:36283 RPS20P24 ribosomal protein S20 pseudogene 24 pseudogene pseudogene Approved 9q21.13 09q21.13 2009-03-06 2014-11-19 100271232 ENSG00000236862 OTTHUMG00000020012 NG_010663 19123937 PGOHUM00000236209 +HGNC:35866 RPS20P25 ribosomal protein S20 pseudogene 25 pseudogene pseudogene Approved 9q21.31 09q21.31 2009-03-06 2013-09-23 100271235 ENSG00000228375 OTTHUMG00000020081 NG_010678 19123937 PGOHUM00000236657 +HGNC:36980 RPS20P26 ribosomal protein S20 pseudogene 26 pseudogene pseudogene Approved 11p11.2 11p11.2 2009-03-06 2009-03-11 646660 NG_011349 19123937 +HGNC:36154 RPS20P27 ribosomal protein S20 pseudogene 27 pseudogene pseudogene Approved 11q14.1 11q14.1 2009-03-06 2009-03-11 729927 NG_010383 19123937 +HGNC:36452 RPS20P28 ribosomal protein S20 pseudogene 28 pseudogene pseudogene Approved 12p13 12p13 2009-03-06 2009-03-11 100271560 NG_011035 19123937 +HGNC:36237 RPS20P29 ribosomal protein S20 pseudogene 29 pseudogene pseudogene Approved 12p13.31 12p13.31 2009-03-06 2009-03-11 100271561 NG_011040 19123937 +HGNC:36626 RPS20P30 ribosomal protein S20 pseudogene 30 pseudogene pseudogene Approved 12q24.33 12q24.33 2009-03-06 2009-03-11 100271562 NG_011045 19123937 +HGNC:35767 RPS20P31 ribosomal protein S20 pseudogene 31 pseudogene pseudogene Approved 12q24.2 12q24.2 2009-03-06 2009-03-11 100271563 ENSG00000240925 OTTHUMG00000157789 NG_011049 19123937 +HGNC:36444 RPS20P32 ribosomal protein S20 pseudogene 32 pseudogene pseudogene Approved 13q12.13 13q12.13 2009-03-06 2011-03-23 100129306 ENSG00000218198 OTTHUMG00000016624 NG_010130 19123937 PGOHUM00000248342 +HGNC:36725 RPS20P33 ribosomal protein S20 pseudogene 33 pseudogene pseudogene Approved 14q32.3 14q32.3 2009-03-06 2009-03-11 100271564 ENSG00000242085 OTTHUMG00000158158 NG_011056 19123937 +HGNC:36668 RPS20P34 ribosomal protein S20 pseudogene 34 pseudogene pseudogene Approved 15q21.1 15q21.1 2009-03-06 2009-03-11 100271565 NG_011060 19123937 +HGNC:36929 RPS20P35 ribosomal protein S20 pseudogene 35 pseudogene pseudogene Approved 17q 17q 2009-03-06 2009-03-11 100271566 ENSG00000244086 OTTHUMG00000157838 NG_011067 19123937 +HGNC:10409 RPS21 ribosomal protein S21 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 S21 8.2 kDa differentiation factor S ribosomal proteins 728 1993-09-29 2016-10-05 6227 ENSG00000171858 OTTHUMG00000032915 uc002ycr.4 L04483 NM_001024 CCDS13497 P63220 "8332502|9582194" MGI:1913731 RGD:2323583 RPS21 180477 +HGNC:36401 RPS21P1 ribosomal protein S21 pseudogene 1 pseudogene pseudogene Approved 1q42.3 01q42.3 2009-03-06 2013-10-24 100271090 ENSG00000229795 OTTHUMG00000157020 NG_011248 19123937 +HGNC:36191 RPS21P2 ribosomal protein S21 pseudogene 2 pseudogene pseudogene Approved 2q12.2 02q12.2 2009-03-06 2009-03-11 100132961 NG_010504 19123937 +HGNC:36847 RPS21P3 ribosomal protein S21 pseudogene 3 pseudogene pseudogene Approved 4q21.21 04q21.21 2009-03-06 2009-03-11 100132993 NG_010672 19123937 +HGNC:35922 RPS21P4 ribosomal protein S21 pseudogene 4 pseudogene pseudogene Approved 4p15.32 04p15.32 2009-03-06 2012-11-06 100128912 ENSG00000242358 OTTHUMG00000157438 NG_009712 19123937 PGOHUM00000245473 +HGNC:36359 RPS21P5 ribosomal protein S21 pseudogene 5 pseudogene pseudogene Approved 9q31.3-q32 09q31.3-q32 2009-03-06 2009-03-11 100271236 NG_010685 19123937 +HGNC:36317 RPS21P6 ribosomal protein S21 pseudogene 6 pseudogene pseudogene Approved 18q21.1 18q21.1 2009-03-06 2009-03-11 100271365 NG_009985 19123937 +HGNC:35577 RPS21P7 ribosomal protein S21 pseudogene 7 pseudogene pseudogene Approved 20p13 20p13 2009-03-06 2009-03-11 100271366 NG_009993 19123937 +HGNC:39705 RPS21P8 ribosomal protein S21 pseudogene 8 pseudogene pseudogene Approved 13q12.13 13q12.13 2011-03-23 2012-10-16 100873798 ENSG00000223782 OTTHUMG00000016623 NG_032349 PGOHUM00000262887 +HGNC:10410 RPS23 ribosomal protein S23 protein-coding gene gene with protein product Approved 5q14.2 05q14.2 S23 S ribosomal proteins 728 1998-07-22 2015-08-25 6228 ENSG00000186468 OTTHUMG00000162557 uc003khu.4 AB007158 NM_001025 CCDS47241 P62266 9582194 MGI:1913725 RGD:621039 RPS23 603683 +HGNC:16043 RPS23P1 ribosomal protein S23 pseudogene 1 pseudogene pseudogene Approved 8q22.1 08q22.1 2009-03-01 2015-08-24 93948 ENSG00000243504 OTTHUMG00000158669 NG_000953 19123937 PGOHUM00000303633 +HGNC:36568 RPS23P2 ribosomal protein S23 pseudogene 2 pseudogene pseudogene Approved 4q28.3 04q28.3 2009-03-06 2015-08-24 391701 ENSG00000213448 OTTHUMG00000157567 NG_009493 19123937 PGOHUM00000300383 +HGNC:35499 RPS23P3 ribosomal protein S23 pseudogene 3 pseudogene pseudogene Approved 4q13.2 04q13.2 2009-03-06 2015-08-24 100271091 ENSG00000244099 OTTHUMG00000157494 NG_011257 19123937 PGOHUM00000300232 +HGNC:36633 RPS23P4 ribosomal protein S23 pseudogene 4 pseudogene pseudogene Approved 4q31.21 04q31.21 2009-03-06 2015-08-24 100271092 ENSG00000240992 OTTHUMG00000157579 NG_011263 19123937 PGOHUM00000300024 +HGNC:35726 RPS23P5 ribosomal protein S23 pseudogene 5 pseudogene pseudogene Approved 5p15.2 05p15.2 2009-03-06 2015-08-24 100271093 ENSG00000242608 OTTHUMG00000157616 NG_011270 19123937 PGOHUM00000300492 +HGNC:36511 RPS23P6 ribosomal protein S23 pseudogene 6 pseudogene pseudogene Approved 16p13.13 16p13.13 2009-03-06 2015-08-24 100271367 ENSG00000241641 OTTHUMG00000158098 NG_010000 19123937 PGOHUM00000293706 +HGNC:43899 RPS23P7 ribosomal protein S23 pseudogene 7 pseudogene pseudogene Approved 17q23.2 17q23.2 2012-04-27 2012-04-27 2015-08-24 100130106 ENSG00000239527 OTTHUMG00000157912 NG_009489 PGOHUM00000294509 +HGNC:35982 RPS23P8 ribosomal protein S23 pseudogene 8 pseudogene pseudogene Approved Xq13.1 Xq13.1 2009-03-06 2015-08-24 653658 ENSG00000230629 OTTHUMG00000021781 NG_009491 19123937 PGOHUM00000305131 +HGNC:48341 RPS23P9 ribosomal protein S23 pseudogene 9 pseudogene pseudogene Approved 1q23.3 01q23.3 2013-05-09 2015-08-24 100419472 ENSG00000231586 OTTHUMG00000074097 NG_027007 PGOHUM00000295934 +HGNC:48342 RPS23P10 ribosomal protein S23 pseudogene 10 pseudogene pseudogene Approved 1q23.3 01q23.3 2013-05-09 2015-08-24 100419471 ENSG00000224203 OTTHUMG00000034471 NG_027006 PGOHUM00000295933 +HGNC:10411 RPS24 ribosomal protein S24 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 S24 S ribosomal proteins 728 1990-08-22 2016-10-05 6229 ENSG00000138326 OTTHUMG00000018549 uc001jzq.4 AB007159 NM_001026 "CCDS7355|CCDS7356|CCDS44443" P62847 "9027498|9582194" MGI:98147 RGD:621040 Diamond-Blackfan Anemia|http://www.dbagenes.unito.it/home.php?select_db=RPS24 RPS24 602412 118403 +HGNC:10412 RPS24P1 ribosomal protein S24 pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 RPS24P ribosomal protein S24 pseudogene 1999-10-28 2001-12-14 2001-12-10 2014-11-18 23756 ENSG00000236477 OTTHUMG00000036383 NG_000893 PGOHUM00000233952 +HGNC:19791 RPS24P2 ribosomal protein S24 pseudogene 2 pseudogene pseudogene Approved 14q24.3 14q24.3 2009-03-01 2014-11-18 326321 NG_002571 19123937 +HGNC:19797 RPS24P3 ribosomal protein S24 pseudogene 3 pseudogene pseudogene Approved 14q31.1 14q31.1 2009-03-01 2014-11-19 326322 NG_002572 19123937 +HGNC:35852 RPS24P4 ribosomal protein S24 pseudogene 4 pseudogene pseudogene Approved 1q42.2 01q42.2 2009-03-06 2009-03-11 729257 NG_009044 19123937 +HGNC:36026 RPS24P5 ribosomal protein S24 pseudogene 5 pseudogene pseudogene Approved 1p36.13-q41 01p36.13-q41 2009-03-06 2009-03-11 100271094 NG_011274 19123937 +HGNC:36240 RPS24P6 ribosomal protein S24 pseudogene 6 pseudogene pseudogene Approved 2q11.1 02q11.1 2009-03-06 2013-09-23 100216339 ENSG00000233158 OTTHUMG00000155141 NG_009040 19123937 PGOHUM00000240783 +HGNC:35737 RPS24P7 ribosomal protein S24 pseudogene 7 pseudogene pseudogene Approved 2p15 02p15 2009-03-06 2013-09-23 100216342 ENSG00000227361 OTTHUMG00000153265 NG_009043 19123937 PGOHUM00000240658 +HGNC:37016 RPS24P8 ribosomal protein S24 pseudogene 8 pseudogene pseudogene Approved 3p21.31 03p21.31 2009-03-06 2013-09-23 100216336 ENSG00000224094 OTTHUMG00000156988 NG_009034 19123937 PGOHUM00000237609 +HGNC:35711 RPS24P9 ribosomal protein S24 pseudogene 9 pseudogene pseudogene Approved 3q21.2 03q21.2 2009-03-06 2009-03-11 100132496 NG_010758 19123937 +HGNC:36554 RPS24P10 ribosomal protein S24 pseudogene 10 pseudogene pseudogene Approved 3p25 03p25 2009-03-06 2009-03-11 100271097 NG_011289 19123937 +HGNC:36050 RPS24P11 ribosomal protein S24 pseudogene 11 pseudogene pseudogene Approved 4p16.1 04p16.1 2009-03-06 2009-03-11 100128519 NG_010003 19123937 +HGNC:35623 RPS24P12 ribosomal protein S24 pseudogene 12 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2012-01-26 100271098 ENSG00000220237 OTTHUMG00000015309 NG_011293 19123937 PGOHUM00000243730 +HGNC:36805 RPS24P13 ribosomal protein S24 pseudogene 13 pseudogene pseudogene Approved 10p11.22 10p11.22 2009-03-06 2013-09-23 100216338 ENSG00000233190 OTTHUMG00000017920 NG_009039 19123937 PGOHUM00000256551 +HGNC:35744 RPS24P14 ribosomal protein S24 pseudogene 14 pseudogene pseudogene Approved 11p15.4 11p15.4 2009-03-06 2009-03-11 100128423 ENSG00000223688 OTTHUMG00000011699 NG_009035 19123937 +HGNC:35665 RPS24P15 ribosomal protein S24 pseudogene 15 pseudogene pseudogene Approved 11p13 11p13 2009-03-06 2009-03-11 390107 NG_009036 19123937 +HGNC:35542 RPS24P16 ribosomal protein S24 pseudogene 16 pseudogene pseudogene Approved 15q23 15q23 2009-03-06 2013-09-23 100216340 ENSG00000242634 OTTHUMG00000157982 NG_009041 19123937 PGOHUM00000262919 +HGNC:36348 RPS24P17 ribosomal protein S24 pseudogene 17 pseudogene pseudogene Approved 16q13 16q13 2009-03-06 2009-03-11 100216341 ENSG00000243988 OTTHUMG00000158147 NG_009042 19123937 +HGNC:36745 RPS24P18 ribosomal protein S24 pseudogene 18 pseudogene pseudogene Approved 18q11.2 18q11.2 2009-03-06 2009-03-11 100271371 ENSG00000243925 OTTHUMG00000158184 NG_010023 19123937 +HGNC:35683 RPS24P19 ribosomal protein S24 pseudogene 19 pseudogene pseudogene Approved Xq26.2 Xq26.2 2009-03-06 2009-03-11 100130183 NG_009037 19123937 +HGNC:10413 RPS25 ribosomal protein S25 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 S25 S ribosomal proteins 728 1992-02-14 2015-08-25 6230 ENSG00000118181 OTTHUMG00000166350 uc001pun.4 M64716 NM_001028 CCDS8406 P62851 1748303 MGI:1922867 RGD:621043 RPS25 180465 +HGNC:34027 RPS25P1 ribosomal protein S25 pseudogene 1 pseudogene pseudogene Approved 11p14.1 11p14.1 2009-03-01 2014-11-19 283114 NG_003216 19123937 +HGNC:36701 RPS25P2 ribosomal protein S25 pseudogene 2 pseudogene pseudogene Approved 1q32.2 01q32.2 2009-03-06 2009-03-11 100271100 NG_011304 19123937 +HGNC:36073 RPS25P3 ribosomal protein S25 pseudogene 3 pseudogene pseudogene Approved 2p24.1 02p24.1 2009-03-06 2009-03-11 100271101 NG_011312 19123937 +HGNC:35669 RPS25P4 ribosomal protein S25 pseudogene 4 pseudogene pseudogene Approved 3p21.1 03p21.1 2009-03-06 2009-03-11 391539 NG_010598 19123937 +HGNC:35788 RPS25P5 ribosomal protein S25 pseudogene 5 pseudogene pseudogene Approved 3q21-q25 03q21-q25 2009-03-06 2009-03-11 100271102 NG_011318 19123937 +HGNC:35532 RPS25P6 ribosomal protein S25 pseudogene 6 pseudogene pseudogene Approved 5q23.1 05q23.1 2009-03-06 2009-03-11 401206 NG_006648 19123937 +HGNC:36585 RPS25P7 ribosomal protein S25 pseudogene 7 pseudogene pseudogene Approved 6p25 06p25 2009-03-06 2009-03-11 100271103 NG_011323 19123937 +HGNC:36075 RPS25P8 ribosomal protein S25 pseudogene 8 pseudogene pseudogene Approved 9q33.2 09q33.2 2009-03-06 2009-03-11 100131196 NG_010642 19123937 +HGNC:36936 RPS25P9 ribosomal protein S25 pseudogene 9 pseudogene pseudogene Approved 10q22.1 10q22.1 2009-03-06 2016-08-16 100271373 ENSG00000232142 OTTHUMG00000018403 NG_010036 19123937 PGOHUM00000289896 +HGNC:36078 RPS25P10 ribosomal protein S25 pseudogene 10 pseudogene pseudogene Approved 22q13.1 22q13.1 2009-03-06 2009-03-11 100271372 NG_010031 19123937 +HGNC:10414 RPS26 ribosomal protein S26 protein-coding gene gene with protein product Approved 12q13 12q13 S26 40S ribosomal protein S26 S ribosomal proteins 728 1993-01-19 2011-04-06 6231 ENSG00000197728 OTTHUMG00000170139 uc001sjf.4 AB007160 NM_001029 CCDS31832 P62854 "9582194|8670309" MGI:1351628 RGD:621044 RPS26 603701 225337 +HGNC:10415 RPS26P1 ribosomal protein S26 pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 RPS26P ribosomal protein S26 pseudogene 2000-05-23 2001-12-14 2001-12-07 2009-01-23 54024 NG_000905 +HGNC:23662 RPS26P2 ribosomal protein S26 pseudogene 2 pseudogene pseudogene Approved 9p21.1 09p21.1 bA98O11.1 2009-03-01 2014-11-19 646753 ENSG00000233278 OTTHUMG00000019731 NG_009772 19123937 +HGNC:23411 RPS26P3 ribosomal protein S26 pseudogene 3 pseudogene pseudogene Approved 9p23 09p23 bA338L20.1 2009-03-01 2014-11-19 441386 ENSG00000212829 OTTHUMG00000019545 NG_004800 "10557312|19123937" RPS26P3 +HGNC:23775 RPS26P4 ribosomal protein S26 pseudogene 4 pseudogene pseudogene Approved 21q22.2 21q22.2 2009-03-01 2014-11-18 692146 ENSG00000228349 OTTHUMG00000086713 AF121781 NG_005578 19123937 PGOHUM00000239087 +HGNC:23776 RPS26P5 ribosomal protein S26 pseudogene 5 pseudogene pseudogene Approved 21q21.1 21q21.1 2009-03-01 2014-11-18 387495 ENSG00000224602 OTTHUMG00000074375 NG_009769 19123937 PGOHUM00000239039 +HGNC:31090 RPS26P6 ribosomal protein S26 pseudogene 6 pseudogene pseudogene Approved 8q22.3 08q22.3 2009-03-01 2014-11-18 392256 ENSG00000212994 OTTHUMG00000158673 NG_003189 19123937 +HGNC:20077 RPS26P7 ribosomal protein S26 pseudogene 7 pseudogene pseudogene Approved 8q12.1 08q12.1 HsT24280 2009-03-01 2014-11-19 619443 NG_009773 19123937 +HGNC:31329 RPS26P8 ribosomal protein S26 pseudogene 8 pseudogene pseudogene Approved 17q21.31 17q21.31 2009-03-01 2014-11-19 644191 ENSG00000204652 OTTHUMG00000132555 AC126544 NG_009394 19123937 +HGNC:31821 RPS26P9 ribosomal protein S26 pseudogene 9 pseudogene pseudogene Approved 14q11.1 14q11.1 2009-03-01 2014-11-19 446209 NG_009962 19123937 +HGNC:32201 RPS26P10 ribosomal protein S26 pseudogene 10 pseudogene pseudogene Approved 8q21.3 08q21.3 2009-03-01 2014-11-19 401470 NG_005790 19123937 +HGNC:31817 RPS26P11 ribosomal protein S26 pseudogene 11 pseudogene pseudogene Approved Xq13.1 Xq13.1 bA366E13.1 RPS26L1 ribosomal protein S26-like 1 2009-03-01 2009-01-23 2009-01-23 2014-11-19 441502 ENSG00000196933 OTTHUMG00000021806 NR_002309 Q5JNZ5 19123937 RGD:2319323 RPS26P11 +HGNC:35487 RPS26P12 ribosomal protein S26 pseudogene 12 pseudogene pseudogene Approved 1q24 01q24 2009-03-06 2009-03-11 100271104 NG_009954 19123937 +HGNC:35784 RPS26P13 ribosomal protein S26 pseudogene 13 pseudogene pseudogene Approved 1q32.2 01q32.2 2009-03-06 2013-09-23 100271106 ENSG00000227887 OTTHUMG00000036135 NG_009965 19123937 PGOHUM00000244406 +HGNC:36992 RPS26P14 ribosomal protein S26 pseudogene 14 pseudogene pseudogene Approved 1p32.3 01p32.3 2009-03-06 2009-03-11 100270902 NG_010283 19123937 +HGNC:35680 RPS26P15 ribosomal protein S26 pseudogene 15 pseudogene pseudogene Approved 1p32.2 01p32.2 2009-03-06 2013-12-03 644928 ENSG00000223416 OTTHUMG00000010072 NG_010340 19123937 +HGNC:35557 RPS26P16 ribosomal protein S26 pseudogene 16 pseudogene pseudogene Approved 1q25.2 01q25.2 2009-03-06 2009-03-11 730177 NG_009599 19123937 +HGNC:36681 RPS26P17 ribosomal protein S26 pseudogene 17 pseudogene pseudogene Approved 1q41 01q41 2009-03-06 2009-03-11 391165 NG_011316 19123937 +HGNC:35782 RPS26P18 ribosomal protein S26 pseudogene 18 pseudogene pseudogene Approved 2p24 02p24 2009-03-06 2009-03-11 100271108 NG_009977 19123937 +HGNC:36377 RPS26P19 ribosomal protein S26 pseudogene 19 pseudogene pseudogene Approved 2q21 02q21 2009-03-06 2009-03-11 100271110 NG_009992 19123937 +HGNC:36485 RPS26P20 ribosomal protein S26 pseudogene 20 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2009-03-11 644166 NG_010373 19123937 +HGNC:36469 RPS26P21 ribosomal protein S26 pseudogene 21 pseudogene pseudogene Approved 3q13.32 03q13.32 2009-03-06 2016-10-05 100271105 ENSG00000242829 OTTHUMG00000157351 NG_009959 19123937 PGOHUM00000238140 +HGNC:36261 RPS26P22 ribosomal protein S26 pseudogene 22 pseudogene pseudogene Approved 3q13 03q13 2009-03-06 2009-03-11 100271112 NG_010008 19123937 +HGNC:36332 RPS26P23 ribosomal protein S26 pseudogene 23 pseudogene pseudogene Approved 4q26 04q26 2009-03-06 2009-03-11 100271107 NG_009972 19123937 +HGNC:36917 RPS26P24 ribosomal protein S26 pseudogene 24 pseudogene pseudogene Approved 4q12 04q12 2009-03-06 2013-09-23 100271113 ENSG00000243920 OTTHUMG00000157479 NG_010013 19123937 PGOHUM00000245541 +HGNC:35730 RPS26P25 ribosomal protein S26 pseudogene 25 pseudogene pseudogene Approved 4q26 04q26 2009-03-06 2009-03-11 728937 NG_010542 19123937 +HGNC:36029 RPS26P26 ribosomal protein S26 pseudogene 26 pseudogene pseudogene Approved 5q13.3 05q13.3 2009-03-06 2009-03-11 100271109 NG_009984 19123937 +HGNC:35636 RPS26P27 ribosomal protein S26 pseudogene 27 pseudogene pseudogene Approved 5q11-q12 05q11-q12 2009-03-06 2009-03-11 100271237 NG_010690 19123937 +HGNC:36149 RPS26P28 ribosomal protein S26 pseudogene 28 pseudogene pseudogene Approved 5p15.1 05p15.1 2009-03-06 2015-07-22 643003 ENSG00000243538 OTTHUMG00000157620 NG_006027 19123937 PGOHUM00000300500 +HGNC:36456 RPS26P29 ribosomal protein S26 pseudogene 29 pseudogene pseudogene Approved 6p24.3 06p24.3 2009-03-06 2009-03-11 442158 NG_009788 19123937 +HGNC:35574 RPS26P30 ribosomal protein S26 pseudogene 30 pseudogene pseudogene Approved 7p21.1 07p21.1 2009-03-06 2014-01-07 100271111 ENSG00000234839 OTTHUMG00000152586 NG_009999 19123937 PGOHUM00000233145 +HGNC:36614 RPS26P31 ribosomal protein S26 pseudogene 31 pseudogene pseudogene Approved 7q31.32 07q31.32 2009-03-06 2009-03-11 645979 ENSG00000235459 OTTHUMG00000157100 NG_009433 19123937 +HGNC:35753 RPS26P32 ribosomal protein S26 pseudogene 32 pseudogene pseudogene Approved 7p15.3 07p15.3 2009-03-06 2009-03-11 389472 NG_004809 19123937 +HGNC:36227 RPS26P33 ribosomal protein S26 pseudogene 33 pseudogene pseudogene Approved 7q21.3-q22.1 07q21.3-q22.1 2009-03-06 2009-03-11 100271239 NG_010704 19123937 +HGNC:36894 RPS26P34 ribosomal protein S26 pseudogene 34 pseudogene pseudogene Approved 8q21.13 08q21.13 2009-03-06 2009-03-11 100271114 ENSG00000240427 OTTHUMG00000158661 NG_010018 19123937 +HGNC:36229 RPS26P35 ribosomal protein S26 pseudogene 35 pseudogene pseudogene Approved 8q24.12 08q24.12 2009-03-06 2009-03-11 441377 ENSG00000242206 OTTHUMG00000158691 NG_010179 19123937 +HGNC:36561 RPS26P36 ribosomal protein S26 pseudogene 36 pseudogene pseudogene Approved 8q24.3 08q24.3 2009-03-06 2009-03-11 100271240 NG_010708 19123937 +HGNC:36875 RPS26P37 ribosomal protein S26 pseudogene 37 pseudogene pseudogene Approved 9q22.3 09q22.3 2009-03-06 2009-03-11 100271238 NG_010696 19123937 +HGNC:36406 RPS26P38 ribosomal protein S26 pseudogene 38 pseudogene pseudogene Approved 10q23.2 10q23.2 2009-03-06 2016-08-17 100129552 ENSG00000234192 OTTHUMG00000018681 NG_010063 19123937 PGOHUM00000290235 +HGNC:36958 RPS26P39 ribosomal protein S26 pseudogene 39 pseudogene pseudogene Approved 10q26.13 10q26.13 2009-03-06 2016-08-16 100128168 ENSG00000227586 OTTHUMG00000019196 NG_010876 19123937 PGOHUM00000290009 +HGNC:36906 RPS26P40 ribosomal protein S26 pseudogene 40 pseudogene pseudogene Approved 10q22.1 10q22.1 2009-03-06 2016-08-16 338611 ENSG00000231366 OTTHUMG00000018415 NG_010929 19123937 PGOHUM00000289898 +HGNC:36062 RPS26P41 ribosomal protein S26 pseudogene 41 pseudogene pseudogene Approved 10q22.2 10q22.2 2009-03-06 2016-08-16 100271567 ENSG00000237139 OTTHUMG00000018468 NG_011073 19123937 PGOHUM00000290204 +HGNC:36243 RPS26P42 ribosomal protein S26 pseudogene 42 pseudogene pseudogene Approved 10q22.2 10q22.2 2009-03-06 2016-08-17 100271568 ENSG00000232437 OTTHUMG00000018514 NG_011080 19123937 PGOHUM00000290209 +HGNC:36675 RPS26P43 ribosomal protein S26 pseudogene 43 pseudogene pseudogene Approved 11q24.1 11q24.1 2009-03-06 2009-03-11 100271571 ENSG00000244641 OTTHUMG00000158478 NG_011092 19123937 +HGNC:36927 RPS26P44 ribosomal protein S26 pseudogene 44 pseudogene pseudogene Approved 12p13.3 12p13.3 2009-03-06 2009-03-11 100271569 NG_011083 19123937 +HGNC:36944 RPS26P45 ribosomal protein S26 pseudogene 45 pseudogene pseudogene Approved 12q15 12q15 2009-03-06 2015-07-22 100271570 ENSG00000241765 OTTHUMG00000157615 NG_011087 19123937 PGOHUM00000291723 +HGNC:35807 RPS26P46 ribosomal protein S26 pseudogene 46 pseudogene pseudogene Approved 12p13.1 12p13.1 2009-03-06 2009-03-11 100271572 NG_011095 19123937 +HGNC:36368 RPS26P47 ribosomal protein S26 pseudogene 47 pseudogene pseudogene Approved 13q32.3 13q32.3 2009-03-06 2014-11-18 400156 ENSG00000234354 OTTHUMG00000017285 NG_011410 19123937 +HGNC:35519 RPS26P48 ribosomal protein S26 pseudogene 48 pseudogene pseudogene Approved 14q31 14q31 2009-03-06 2009-03-11 100271574 NG_011106 19123937 +HGNC:35514 RPS26P49 ribosomal protein S26 pseudogene 49 pseudogene pseudogene Approved 14q32.33 14q32.33 2009-03-06 2009-03-11 100271575 ENSG00000239365 OTTHUMG00000158157 NG_011113 19123937 +HGNC:35615 RPS26P50 ribosomal protein S26 pseudogene 50 pseudogene pseudogene Approved 15q22.31 15q22.31 2009-03-06 2009-03-11 644934 NG_010374 19123937 +HGNC:36254 RPS26P51 ribosomal protein S26 pseudogene 51 pseudogene pseudogene Approved 16p13.3 16p13.3 2009-03-06 2009-03-11 100271576 NG_011117 19123937 +HGNC:36863 RPS26P52 ribosomal protein S26 pseudogene 52 pseudogene pseudogene Approved 16p13.3 16p13.3 2009-03-06 2009-03-11 100271577 ENSG00000242307 OTTHUMG00000158102 NG_011121 19123937 +HGNC:35582 RPS26P53 ribosomal protein S26 pseudogene 53 pseudogene pseudogene Approved 17p13.1 17p13.1 2009-03-06 2009-03-11 728823 NG_011282 19123937 +HGNC:36868 RPS26P54 ribosomal protein S26 pseudogene 54 pseudogene pseudogene Approved 18q21.32 18q21.32 2009-03-06 2009-03-11 100131971 ENSG00000224161 OTTHUMG00000158255 NG_010682 19123937 +HGNC:36500 RPS26P55 ribosomal protein S26 pseudogene 55 pseudogene pseudogene Approved 19q13.11 19q13.11 2009-03-06 2014-08-13 100129650 ENSG00000239210 OTTHUMG00000185799 NG_010591 19123937 PGOHUM00000234285 +HGNC:35858 RPS26P56 ribosomal protein S26 pseudogene 56 pseudogene pseudogene Approved Xq25 Xq25 2009-03-06 2011-09-20 100271400 ENSG00000226339 OTTHUMG00000022369 NG_010217 19123937 PGOHUM00000242006 +HGNC:36537 RPS26P57 ribosomal protein S26 pseudogene 57 pseudogene pseudogene Approved Xq25 Xq25 2009-03-06 2009-03-11 100271401 NG_010223 19123937 +HGNC:36571 RPS26P58 ribosomal protein S26 pseudogene 58 pseudogene pseudogene Approved Xp22.11 Xp22.11 2009-03-06 2009-03-11 729188 NG_005780 19123937 +HGNC:10416 RPS27 ribosomal protein S27 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "MPS-1|MPS1|S27" metallopanstimulin 1 ribosomal protein S27 (metallopanstimulin 1) S ribosomal proteins 728 1998-06-05 2008-08-29 2016-10-05 6232 ENSG00000177954 OTTHUMG00000036591 uc001fdv.4 U57847 NM_001030 CCDS1059 P42677 "8908372|8407955" MGI:1888676 RGD:621045 RPS27 603702 +HGNC:10417 RPS27A ribosomal protein S27a protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "UBCEP80|Uba80|S27A" ubiquitin carboxyl extension protein 80 S ribosomal proteins 728 1998-07-29 2016-10-05 6233 ENSG00000143947 OTTHUMG00000151919 uc010yow.3 AB007163 NM_001135592 CCDS33202 P62979 9582194 MGI:1925544 RGD:6489478 RPS27A 191343 +HGNC:17121 RPS27AP1 ribosomal protein S27a pseudogene 1 pseudogene pseudogene Approved 17p13.1 17p13.1 RPS27AP 2009-03-01 2016-06-30 103911 ENSG00000242692 OTTHUMG00000157706 NG_000960 "10772958|19123937" PGOHUM00000294270 +HGNC:16572 RPS27AP2 ribosomal protein S27a pseudogene 2 pseudogene pseudogene Approved 20p12.1 20p12.1 dJ531H16.4 2009-03-01 2016-06-30 140752 ENSG00000232333 OTTHUMG00000031943 AC010083 NG_000995 19123937 PGOHUM00000297059 +HGNC:16538 RPS27AP3 ribosomal protein S27a pseudogene 3 pseudogene pseudogene Approved 20q11.23 20q11.23 bA332A4.3 RPS27AP 2009-03-01 2016-06-30 140714 ENSG00000226144 OTTHUMG00000032404 NG_000985 19123937 PGOHUM00000297115 +HGNC:19775 RPS27AP4 ribosomal protein S27a pseudogene 4 pseudogene pseudogene Approved 14q12 14q12 2009-03-01 2016-06-30 326323 NG_002573 19123937 PGOHUM00000292305 +HGNC:36867 RPS27AP5 ribosomal protein S27a pseudogene 5 pseudogene pseudogene Approved 1q31.2 01q31.2 2009-03-06 2009-03-11 100271374 NG_010047 19123937 +HGNC:36236 RPS27AP6 ribosomal protein S27a pseudogene 6 pseudogene pseudogene Approved 1q21.3 01q21.3 2009-03-06 2016-06-30 100271144 ENSG00000224800 OTTHUMG00000035012 NG_010216 19123937 PGOHUM00000295893 +HGNC:35735 RPS27AP7 ribosomal protein S27a pseudogene 7 pseudogene pseudogene Approved 2p16.3 02p16.3 2009-03-06 2016-06-30 728971 ENSG00000236549 OTTHUMG00000151835 NG_010726 19123937 PGOHUM00000298428 +HGNC:36361 RPS27AP8 ribosomal protein S27a pseudogene 8 pseudogene pseudogene Approved 3q26.31 03q26.31 2009-03-06 2016-06-30 100271375 ENSG00000237483 OTTHUMG00000156948 NG_010054 19123937 PGOHUM00000299269 +HGNC:35630 RPS27AP9 ribosomal protein S27a pseudogene 9 pseudogene pseudogene Approved 5q14.1 05q14.1 2009-03-06 2016-06-30 100271376 ENSG00000242706 OTTHUMG00000157788 NG_010060 19123937 PGOHUM00000300652 +HGNC:36570 RPS27AP10 ribosomal protein S27a pseudogene 10 pseudogene pseudogene Approved 5q31.3 05q31.3 2009-03-06 2016-06-30 100271377 ENSG00000240974 OTTHUMG00000157873 NG_009844 19123937 PGOHUM00000301147 +HGNC:36126 RPS27AP11 ribosomal protein S27a pseudogene 11 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2016-06-30 728590 ENSG00000218208 OTTHUMG00000015402 NG_010049 19123937 PGOHUM00000301922 +HGNC:35732 RPS27AP12 ribosomal protein S27a pseudogene 12 pseudogene pseudogene Approved 7q36.3 07q36.3 2009-03-06 2016-06-30 100130446 ENSG00000225224 OTTHUMG00000157241 NG_010744 19123937 PGOHUM00000303038 +HGNC:36667 RPS27AP13 ribosomal protein S27a pseudogene 13 pseudogene pseudogene Approved 8q11.23 08q11.23 2009-03-06 2016-06-30 100130300 ENSG00000244159 OTTHUMG00000158613 NG_011310 19123937 PGOHUM00000303207 +HGNC:36530 RPS27AP14 ribosomal protein S27a pseudogene 14 pseudogene pseudogene Approved 9p24.3 09p24.3 2009-03-06 2016-06-30 100271378 ENSG00000236594 OTTHUMG00000019440 NG_010076 19123937 PGOHUM00000303707 +HGNC:35817 RPS27AP15 ribosomal protein S27a pseudogene 15 pseudogene pseudogene Approved 9q21.13 09q21.13 2009-03-06 2016-06-30 100271379 ENSG00000229753 OTTHUMG00000020013 NG_010082 19123937 PGOHUM00000303934 +HGNC:36855 RPS27AP16 ribosomal protein S27a pseudogene 16 pseudogene pseudogene Approved 16q21 16q21 2009-03-06 2016-06-30 643358 ENSG00000224631 OTTHUMG00000158168 NG_010157 19123937 PGOHUM00000293625 +HGNC:36877 RPS27AP17 ribosomal protein S27a pseudogene 17 pseudogene pseudogene Approved Xp22.31 Xp22.31 2009-03-06 2016-06-30 392425 ENSG00000237490 OTTHUMG00000021099 NG_011207 19123937 RPS27AP17 PGOHUM00000304934 +HGNC:52299 RPS27AP18 ribosomal protein S27a pseudogene 18 pseudogene pseudogene Approved 5q31.2 05q31.2 2016-06-30 2016-06-30 100419548 ENSG00000249851 OTTHUMG00000163470 NG_024631 PGOHUM00000300769 +HGNC:52298 RPS27AP19 ribosomal protein S27a pseudogene 19 pseudogene pseudogene Approved 19p13.2 19p13.2 2016-06-30 2016-06-30 107985274 ENSG00000269228 OTTHUMG00000182516 PGOHUM00000295175 +HGNC:18476 RPS27L ribosomal protein S27 like protein-coding gene gene with protein product Approved 15q22.2 15q22.2 ribosomal protein S27-like S ribosomal proteins 728 2002-05-03 2015-11-17 2016-10-05 51065 ENSG00000185088 OTTHUMG00000155301 uc002aly.4 BC003667 NM_015920 CCDS42048 Q71UM5 11042152 MGI:1915191 RGD:1595396 RPS27L 612055 +HGNC:23740 RPS27P1 ribosomal protein S27 pseudogene 1 pseudogene pseudogene Approved 10q23.32 10q23.32 bA108M11.3 2009-03-01 2016-08-17 414228 ENSG00000223876 OTTHUMG00000018741 NG_010089 19123937 PGOHUM00000290248 +HGNC:31035 RPS27P2 ribosomal protein S27 pseudogene 2 pseudogene pseudogene Approved 15q11.2 15q11.2 HsT16324 2009-03-01 2014-11-19 654390 AC090602 NG_009534 19123937 +HGNC:17445 RPS27P3 ribosomal protein S27 pseudogene 3 pseudogene pseudogene Approved 12p13.32 12p13.32 2009-03-01 2014-11-19 654365 DQ052670 NG_005391 19123937 +HGNC:16694 RPS27P4 ribosomal protein S27 pseudogene 4 pseudogene pseudogene Approved 3p22.1 03p22.1 2009-03-01 2014-11-18 389112 NG_005671 19123937 +HGNC:36734 RPS27P5 ribosomal protein S27 pseudogene 5 pseudogene pseudogene Approved 1q42.12 01q42.12 2009-03-06 2014-11-19 100271116 ENSG00000238183 OTTHUMG00000037586 NG_010030 19123937 PGOHUM00000245226 +HGNC:36163 RPS27P6 ribosomal protein S27 pseudogene 6 pseudogene pseudogene Approved 1p13.3 01p13.3 2009-03-06 2009-03-11 100132488 NG_009590 19123937 +HGNC:35622 RPS27P7 ribosomal protein S27 pseudogene 7 pseudogene pseudogene Approved 1q25.1 01q25.1 2009-03-06 2009-03-11 100131787 NG_011053 19123937 +HGNC:36022 RPS27P8 ribosomal protein S27 pseudogene 8 pseudogene pseudogene Approved 1q32.1 01q32.1 2009-03-06 2009-03-11 653805 NG_009601 19123937 +HGNC:36964 RPS27P9 ribosomal protein S27 pseudogene 9 pseudogene pseudogene Approved 1p34.3 01p34.3 2009-03-06 2009-03-11 100131572 NG_009591 19123937 +HGNC:35961 RPS27P10 ribosomal protein S27 pseudogene 10 pseudogene pseudogene Approved 2q34 02q34 2009-03-06 2009-03-11 646233 NG_009589 19123937 +HGNC:36014 RPS27P11 ribosomal protein S27 pseudogene 11 pseudogene pseudogene Approved 3p21.3-p21.2 03p21.3-p21.2 2009-03-06 2009-03-11 100271115 NG_010022 19123937 +HGNC:35843 RPS27P12 ribosomal protein S27 pseudogene 12 pseudogene pseudogene Approved 3q21.3 03q21.3 2009-03-06 2016-10-05 100271117 ENSG00000241673 OTTHUMG00000157373 NG_010035 19123937 PGOHUM00000237764 +HGNC:36203 RPS27P13 ribosomal protein S27 pseudogene 13 pseudogene pseudogene Approved 4p15.31 04p15.31 2009-03-06 2009-03-11 100130070 NG_010105 19123937 +HGNC:35923 RPS27P14 ribosomal protein S27 pseudogene 14 pseudogene pseudogene Approved 5q13.2 05q13.2 2009-03-06 2009-03-11 100129279 ENSG00000244717 OTTHUMG00000157737 NG_011327 19123937 +HGNC:35863 RPS27P15 ribosomal protein S27 pseudogene 15 pseudogene pseudogene Approved 6q14-q15 06q14-q15 2009-03-06 2009-03-11 100271118 ENSG00000218459 OTTHUMG00000015037 NG_010046 19123937 +HGNC:36560 RPS27P16 ribosomal protein S27 pseudogene 16 pseudogene pseudogene Approved 7p14.3 07p14.3 2009-03-06 2016-10-05 100271119 ENSG00000225907 OTTHUMG00000157133 NG_010053 19123937 PGOHUM00000233164 +HGNC:36291 RPS27P17 ribosomal protein S27 pseudogene 17 pseudogene pseudogene Approved 7q21.3 07q21.3 2009-03-06 2009-03-11 392748 NG_005350 19123937 +HGNC:36296 RPS27P18 ribosomal protein S27 pseudogene 18 pseudogene pseudogene Approved 10q26.13 10q26.13 2009-03-06 2014-11-19 100271380 ENSG00000233135 OTTHUMG00000019226 NG_010087 19123937 PGOHUM00000238647 +HGNC:36094 RPS27P19 ribosomal protein S27 pseudogene 19 pseudogene pseudogene Approved 11q23.3 11q23.3 2009-03-06 2009-03-11 100129905 NG_010583 19123937 +HGNC:36333 RPS27P20 ribosomal protein S27 pseudogene 20 pseudogene pseudogene Approved 11q24.3 11q24.3 2009-03-06 2013-09-23 100271581 ENSG00000240121 OTTHUMG00000158482 NG_011143 19123937 PGOHUM00000242928 +HGNC:35826 RPS27P21 ribosomal protein S27 pseudogene 21 pseudogene pseudogene Approved 12q12 12q12 2009-03-06 2009-03-11 100131905 NG_010348 19123937 +HGNC:36090 RPS27P22 ribosomal protein S27 pseudogene 22 pseudogene pseudogene Approved 12p12.1 12p12.1 2009-03-06 2014-11-18 100131418 ENSG00000241451 OTTHUMG00000157506 NG_010471 19123937 PGOHUM00000239706 +HGNC:35716 RPS27P23 ribosomal protein S27 pseudogene 23 pseudogene pseudogene Approved 12q23.2 12q23.2 2009-03-06 2014-11-19 100130775 ENSG00000239413 OTTHUMG00000157689 NG_011114 19123937 PGOHUM00000239906 +HGNC:37005 RPS27P24 ribosomal protein S27 pseudogene 24 pseudogene pseudogene Approved 12q14.2 12q14.2 2009-03-06 2009-03-11 100133668 NG_010194 19123937 +HGNC:36020 RPS27P25 ribosomal protein S27 pseudogene 25 pseudogene pseudogene Approved 12q 12q 2009-03-06 2014-11-19 100271584 ENSG00000239881 OTTHUMG00000157795 NG_011158 19123937 PGOHUM00000239943 +HGNC:36904 RPS27P26 ribosomal protein S27 pseudogene 26 pseudogene pseudogene Approved 16q22.1 16q22.1 2009-03-06 2016-10-05 100271583 ENSG00000240043 OTTHUMG00000158243 NG_011154 19123937 PGOHUM00000248924 +HGNC:36043 RPS27P27 ribosomal protein S27 pseudogene 27 pseudogene pseudogene Approved 16q21 16q21 2009-03-06 2014-11-19 100271585 ENSG00000244043 OTTHUMG00000158166 NG_011161 19123937 PGOHUM00000249151 +HGNC:36748 RPS27P28 ribosomal protein S27 pseudogene 28 pseudogene pseudogene Approved 18q12.1 18q12.1 2009-03-06 2009-03-11 100271586 NG_011166 19123937 +HGNC:36516 RPS27P29 ribosomal protein S27 pseudogene 29 pseudogene pseudogene Approved 19p12 19p12 2009-03-06 2016-07-25 100132291 ENSG00000240231 OTTHUMG00000158101 NG_011011 19123937 +HGNC:10418 RPS28 ribosomal protein S28 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 S28 40S ribosomal protein S28 S ribosomal proteins 728 1993-12-07 2015-09-09 6234 ENSG00000233927 OTTHUMG00000182460 uc002mjn.4 D14530 NM_001031 CCDS45953 P62857 "8415000|9582194" MGI:1859516 RGD:621046 RPS28 603685 412866 +HGNC:23561 RPS28P1 ribosomal protein S28 pseudogene 1 pseudogene pseudogene Approved 14q23.2 14q23.2 2005-12-09 2013-09-23 652980 ENSG00000270912 OTTHUMG00000184599 AL162832 NG_005981 PGOHUM00000248202 +HGNC:36211 RPS28P2 ribosomal protein S28 pseudogene 2 pseudogene pseudogene Approved 1q41 01q41 2009-03-06 2009-03-11 100271120 NG_010059 19123937 +HGNC:36589 RPS28P3 ribosomal protein S28 pseudogene 3 pseudogene pseudogene Approved 1q42.13 01q42.13 2009-03-06 2009-03-11 644862 NG_005978 19123937 +HGNC:36208 RPS28P4 ribosomal protein S28 pseudogene 4 pseudogene pseudogene Approved 2q37.1 02q37.1 2009-03-06 2009-03-11 645899 NG_005979 19123937 +HGNC:36802 RPS28P5 ribosomal protein S28 pseudogene 5 pseudogene pseudogene Approved 2p13.1 02p13.1 2009-03-06 2009-03-11 100271121 NG_010066 19123937 +HGNC:36085 RPS28P6 ribosomal protein S28 pseudogene 6 pseudogene pseudogene Approved 7q11.22 07q11.22 2009-03-06 2009-03-11 728453 NG_010692 19123937 +HGNC:35787 RPS28P7 ribosomal protein S28 pseudogene 7 pseudogene pseudogene Approved 11q14.1 11q14.1 2009-03-06 2014-06-17 646195 ENSG00000227097 OTTHUMG00000158427 NG_005980 19123937 +HGNC:36938 RPS28P8 ribosomal protein S28 pseudogene 8 pseudogene pseudogene Approved 13q14.11 13q14.11 2009-03-06 2011-03-15 100271381 ENSG00000226093 OTTHUMG00000016798 NG_010096 19123937 PGOHUM00000248574 +HGNC:36193 RPS28P9 ribosomal protein S28 pseudogene 9 pseudogene pseudogene Approved 17p11.1 17p11.1 2009-03-06 2009-03-11 650788 NG_010195 19123937 +HGNC:10419 RPS29 ribosomal protein S29 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 S29 S ribosomal proteins 728 1997-07-04 2015-09-09 6235 ENSG00000213741 OTTHUMG00000140272 uc001wwm.5 L31610 NM_001030001 "CCDS9685|CCDS32072" P62273 "8781548|7772601" MGI:107681 RGD:3596 RPS29 603633 406759 +HGNC:19783 RPS29P1 ribosomal protein S29 pseudogene 1 pseudogene pseudogene Approved 14q24.1 14q24.1 2009-03-01 2016-07-28 122449 ENSG00000242293 OTTHUMG00000157974 NG_002523 19123937 PGOHUM00000292393 +HGNC:31083 RPS29P2 ribosomal protein S29 pseudogene 2 pseudogene pseudogene Approved 8p11.21 08p11.21 HsT23291 2009-03-01 2016-07-28 619452 ENSG00000239281 OTTHUMG00000158607 NG_009781 19123937 PGOHUM00000303515 +HGNC:31363 RPS29P3 ribosomal protein S29 pseudogene 3 pseudogene pseudogene Approved 3q29 03q29 bcm2758 2009-03-01 2016-07-28 642892 ENSG00000225770 OTTHUMG00000155584 AC092933 NG_009392 19123937 PGOHUM00000299712 +HGNC:35908 RPS29P4 ribosomal protein S29 pseudogene 4 pseudogene pseudogene Approved 1q25.1 01q25.1 2009-03-06 2016-07-28 100271123 ENSG00000233946 OTTHUMG00000034881 NG_010081 19123937 PGOHUM00000296664 +HGNC:35584 RPS29P5 ribosomal protein S29 pseudogene 5 pseudogene pseudogene Approved 1q25.1 01q25.1 2009-03-06 2016-07-28 100271124 ENSG00000230777 OTTHUMG00000034948 NG_010086 19123937 PGOHUM00000296665 +HGNC:35718 RPS29P6 ribosomal protein S29 pseudogene 6 pseudogene pseudogene Approved 1p34.3 01p34.3 2009-03-06 2016-07-28 100270903 ENSG00000230451 OTTHUMG00000156996 NG_010290 19123937 PGOHUM00000296283 +HGNC:36594 RPS29P7 ribosomal protein S29 pseudogene 7 pseudogene pseudogene Approved 1p31.3 01p31.3 2009-03-06 2016-07-28 100128377 ENSG00000231622 OTTHUMG00000009034 NG_010628 19123937 PGOHUM00000296353 +HGNC:36915 RPS29P8 ribosomal protein S29 pseudogene 8 pseudogene pseudogene Approved 2q23.1 02q23.1 2009-03-06 2016-07-28 100132376 ENSG00000232238 OTTHUMG00000153740 NG_010119 19123937 PGOHUM00000298753 +HGNC:36913 RPS29P9 ribosomal protein S29 pseudogene 9 pseudogene pseudogene Approved 2q33.3 02q33.3 2009-03-06 2016-07-28 648343 ENSG00000223433 OTTHUMG00000154789 NG_009588 19123937 PGOHUM00000298859 +HGNC:37006 RPS29P10 ribosomal protein S29 pseudogene 10 pseudogene pseudogene Approved 2p15 02p15 2009-03-06 2016-07-28 100132037 ENSG00000226884 OTTHUMG00000152362 NG_011022 19123937 PGOHUM00000297879 +HGNC:36413 RPS29P11 ribosomal protein S29 pseudogene 11 pseudogene pseudogene Approved 4p15.2 04p15.2 2009-03-06 2016-07-28 100129902 ENSG00000242640 OTTHUMG00000157445 NG_010569 19123937 PGOHUM00000300170 +HGNC:36458 RPS29P12 ribosomal protein S29 pseudogene 12 pseudogene pseudogene Approved 5q35.3 05q35.3 2009-03-06 2016-07-28 100131173 ENSG00000243664 OTTHUMG00000157973 NG_010523 19123937 PGOHUM00000301215 +HGNC:35818 RPS29P13 ribosomal protein S29 pseudogene 13 pseudogene pseudogene Approved 6q22.1 06q22.1 2009-03-06 2016-07-28 100271122 ENSG00000217089 OTTHUMG00000015450 NG_010075 19123937 PGOHUM00000301522 +HGNC:36471 RPS29P14 ribosomal protein S29 pseudogene 14 pseudogene pseudogene Approved 7p14.3 07p14.3 2009-03-06 2016-07-28 100129599 ENSG00000229054 OTTHUMG00000152987 NG_010334 19123937 PGOHUM00000302094 +HGNC:35876 RPS29P15 ribosomal protein S29 pseudogene 15 pseudogene pseudogene Approved 7q22.1 07q22.1 2009-03-06 2016-07-28 100271241 ENSG00000235926 OTTHUMG00000157035 NG_010712 19123937 PGOHUM00000302872 +HGNC:35560 RPS29P16 ribosomal protein S29 pseudogene 16 pseudogene pseudogene Approved 7q22.1 07q22.1 2009-03-06 2016-07-28 100132499 ENSG00000235354 OTTHUMG00000157199 NG_009436 19123937 PGOHUM00000302878 +HGNC:35479 RPS29P17 ribosomal protein S29 pseudogene 17 pseudogene pseudogene Approved 9p13.3 09p13.3 2009-03-06 2016-07-28 100129379 ENSG00000227852 OTTHUMG00000019864 NG_010514 19123937 PGOHUM00000304169 +HGNC:37004 RPS29P18 ribosomal protein S29 pseudogene 18 pseudogene pseudogene Approved 9q21.33 09q21.33 2009-03-06 2009-03-11 643284 NG_011384 19123937 +HGNC:36118 RPS29P19 ribosomal protein S29 pseudogene 19 pseudogene pseudogene Approved 11q23.2 11q23.2 2009-03-06 2016-07-28 100271383 ENSG00000243353 OTTHUMG00000158462 NG_010109 19123937 PGOHUM00000290710 +HGNC:36491 RPS29P20 ribosomal protein S29 pseudogene 20 pseudogene pseudogene Approved 11p15.4 11p15.4 2009-03-06 2016-07-28 100271587 ENSG00000240385 OTTHUMG00000158282 NG_011171 19123937 PGOHUM00000290786 +HGNC:36479 RPS29P21 ribosomal protein S29 pseudogene 21 pseudogene pseudogene Approved 17q23.1 17q23.1 2009-03-06 2016-07-28 100129542 ENSG00000241913 OTTHUMG00000157891 NG_009996 19123937 PGOHUM00000294491 +HGNC:35799 RPS29P22 ribosomal protein S29 pseudogene 22 pseudogene pseudogene Approved 17q11.2 17q11.2 2009-03-06 2016-07-28 100271384 ENSG00000240873 OTTHUMG00000157761 NG_010116 19123937 PGOHUM00000294034 +HGNC:35779 RPS29P23 ribosomal protein S29 pseudogene 23 pseudogene pseudogene Approved 19p13.2 19p13.2 2009-03-06 2016-07-28 100271588 ENSG00000231361 OTTHUMG00000156401 NG_011175 19123937 PGOHUM00000295206 +HGNC:35794 RPS29P24 ribosomal protein S29 pseudogene 24 pseudogene pseudogene Approved 19q13.2 19q13.2 2009-03-06 2016-07-25 100271589 ENSG00000244253 OTTHUMG00000158191 NG_011180 19123937 PGOHUM00000295361 +HGNC:35649 RPS29P25 ribosomal protein S29 pseudogene 25 pseudogene pseudogene Approved 19q13.2 19q13.2 2009-03-06 2016-07-25 100271590 ENSG00000243581 OTTHUMG00000158190 NG_011183 19123937 PGOHUM00000295362 +HGNC:36490 RPS29P26 ribosomal protein S29 pseudogene 26 pseudogene pseudogene Approved 19q13.2 19q13.2 2009-03-06 2016-07-25 100271591 ENSG00000239320 OTTHUMG00000158189 NG_011188 19123937 PGOHUM00000295363 +HGNC:35836 RPS29P27 ribosomal protein S29 pseudogene 27 pseudogene pseudogene Approved 19q13.2 19q13.2 2009-03-06 2016-07-28 100271592 ENSG00000240320 OTTHUMG00000158194 NG_011193 19123937 PGOHUM00000295368 +HGNC:36830 RPS29P28 ribosomal protein S29 pseudogene 28 pseudogene pseudogene Approved Xq21.33 Xq21.33 2009-03-06 2016-07-28 100271402 ENSG00000232069 OTTHUMG00000021985 NG_010227 19123937 PGOHUM00000305201 +HGNC:52362 RPS29P29 ribosomal protein S29 pseudogene 29 pseudogene pseudogene Approved 1q21.3 01q21.3 2016-07-29 2016-07-29 ENSG00000233717 OTTHUMG00000012215 PGOHUM00000295894 +HGNC:52363 RPS29P30 ribosomal protein S29 pseudogene 30 pseudogene pseudogene Approved 19q13.2 19q13.2 2016-07-29 2016-07-29 107987273 ENSG00000268243 OTTHUMG00000183082 PGOHUM00000295365 +HGNC:52364 RPS29P31 ribosomal protein S29 pseudogene 31 pseudogene pseudogene Approved 22q13.1 22q13.1 2016-07-29 2016-07-29 ENSG00000224279 OTTHUMG00000155623 PGOHUM00000297537 +HGNC:52365 RPS29P32 ribosomal protein S29 pseudogene 32 pseudogene pseudogene Approved 6q23.2 06q23.2 2016-07-29 2016-07-29 ENSG00000276703 OTTHUMG00000187663 PGOHUM00000301955 +HGNC:52366 RPS29P33 ribosomal protein S29 pseudogene 33 pseudogene pseudogene Approved 9p22.2 09p22.2 2016-07-29 2016-07-29 107987018 ENSG00000226470 OTTHUMG00000019595 PGOHUM00000303740 +HGNC:6502 RPSA ribosomal protein SA protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "LRP|37LRP|p40|SA" LAMR1 laminin receptor 1 (67kD, ribosomal protein SA) 1992-06-03 2005-02-11 2002-08-29 2016-10-12 3921 ENSG00000168028 OTTHUMG00000131296 uc003cjp.4 S37431 NM_002295 "CCDS2686|CCDS77723" P08865 "1534510|8760291" MGI:105381 RGD:71026 LRG_735|http://www.lrg-sequence.org/LRG/LRG_735 RPSA 150370 357229 +HGNC:16560 RPSAP1 ribosomal protein SA pseudogene 1 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ1193N1.1 "LAMR1P|LAMR1P1" laminin receptor 1 pseudogene 1 2009-03-01 2006-01-16 2006-01-16 2015-08-24 170529 ENSG00000228820 OTTHUMG00000032746 AL121915 NG_001045 19123937 PGOHUM00000297020 +HGNC:18771 RPSAP2 ribosomal protein SA pseudogene 2 pseudogene pseudogene Approved 6p22.1 06p22.1 bA60E24.1 LAMR1P2 laminin receptor 1 pseudogene 2 2009-03-01 2006-01-16 2006-01-16 2015-08-24 442181 ENSG00000237425 OTTHUMG00000147353 NG_009790 19123937 PGOHUM00000301718 +HGNC:19792 RPSAP3 ribosomal protein SA pseudogene 3 pseudogene pseudogene Approved 14q24.3 14q24.3 LAMR1P3 laminin receptor 1 pseudogene 3 2009-03-01 2006-01-16 2006-01-16 2015-08-24 158674 ENSG00000242952 OTTHUMG00000158059 NG_002489 19123937 PGOHUM00000292413 +HGNC:20018 RPSAP4 ribosomal protein SA pseudogene 4 pseudogene pseudogene Approved 14q32.13 14q32.13 LAMR1P4 laminin receptor 1 pseudogene 4 2009-03-01 2006-01-16 2006-01-16 2015-08-24 145259 ENSG00000239269 OTTHUMG00000158121 NG_002486 19123937 PGOHUM00000292756 +HGNC:20139 RPSAP5 ribosomal protein SA pseudogene 5 pseudogene pseudogene Approved 14q32.32 14q32.32 LAMR1P5 laminin receptor 1 pseudogene 5 2009-03-01 2006-01-16 2006-01-16 2015-08-24 319129 ENSG00000243904 OTTHUMG00000158144 NG_002507 19123937 PGOHUM00000292453 +HGNC:31458 RPSAP6 ribosomal protein SA pseudogene 6 pseudogene pseudogene Approved 10q22.2 10q22.2 AC022026.3 LAMR1P6 laminin receptor 1 pseudogene 6 2009-03-01 2006-01-16 2006-01-16 2015-08-24 414254 ENSG00000214629 OTTHUMG00000018500 NG_009794 19123937 PGOHUM00000290206 +HGNC:31461 RPSAP7 ribosomal protein SA pseudogene 7 pseudogene pseudogene Approved 10p13 10p13 LAMR1P7 laminin receptor 1 pseudogene 7 2009-03-01 2015-08-24 654506 ENSG00000237032 OTTHUMG00000017711 AC069544.9 NG_007324 19123937 PGOHUM00000289749 +HGNC:31462 RPSAP8 ribosomal protein SA pseudogene 8 pseudogene pseudogene Approved Xq22.1 Xq22.1 LAMR1P8 laminin receptor 1 pseudogene 8 2009-03-01 2006-01-16 2006-01-16 2015-08-24 643617 ENSG00000230592 OTTHUMG00000021999 NG_007295 19123937 PGOHUM00000304773 +HGNC:31463 RPSAP9 ribosomal protein SA pseudogene 9 pseudogene pseudogene Approved 9q21.13 09q21.13 LAMR1P9 laminin receptor 1 pseudogene 9 2009-03-01 2006-01-16 2006-01-16 2015-08-24 653162 ENSG00000234618 OTTHUMG00000020041 NR_026890 19123937 PGOHUM00000304329 +HGNC:31460 RPSAP10 ribosomal protein SA pseudogene 10 pseudogene pseudogene Approved 10p12.1 10p12.1 LAMR1P10 2009-03-01 2016-10-05 401638 ENSG00000224439 OTTHUMG00000017870 NG_009741 19123937 PGOHUM00000290079 +HGNC:6503 RPSAP11 ribosomal protein SA pseudogene 11 pseudogene pseudogene Approved 3p22.3 03p22.3 "LAMR|LAMRP1" "LAMRL1|LAMR1P11" "laminin receptor-like 1|laminin receptor 1 pseudogene 11" 2009-03-01 2006-01-16 2006-01-16 2015-08-24 645326 ENSG00000237433 OTTHUMG00000155857 NG_006441 "1649122|19123937" PGOHUM00000299388 +HGNC:6504 RPSAP12 ribosomal protein SA pseudogene 12 pseudogene pseudogene Approved 12q15 12q15 LAMRP2 "LAMRL2|LAMR1P12" "laminin receptor-like 2|laminin receptor 1 pseudogene 12" 2009-03-01 2006-01-16 2006-01-16 2015-08-24 387867 ENSG00000240087 OTTHUMG00000157612 NG_010141 "1649122|19123937" RPSAP12 +HGNC:6505 RPSAP13 ribosomal protein SA pseudogene 13 pseudogene pseudogene Approved 14q22.3 14q22.3 LAMRP3 "LAMRL3|LAMR1P13" "laminin receptor-like 3|laminin receptor 1 pseudogene 13" 2009-03-01 2006-01-16 2006-01-16 2015-08-24 3923 ENSG00000233924 OTTHUMG00000150485 NG_010441 "1649122|19123937" PGOHUM00000292358 +HGNC:6506 RPSAP14 ribosomal protein SA pseudogene 14 pseudogene pseudogene Approved Xq13.2 Xq13.2 LAMRP4 "LAMRL4|LAMR1P14" "laminin receptor-like 4|laminin receptor 1 pseudogene 14" 1990-11-09 2006-01-16 2006-01-16 2015-08-24 3924 ENSG00000233984 OTTHUMG00000021841 L15458 NG_004075 1649122 PGOHUM00000305148 +HGNC:31464 RPSAP15 ribosomal protein SA pseudogene 15 pseudogene pseudogene Approved Xq21.31 Xq21.31 LAMRL5 LAMR1P15 laminin receptor 1 pseudogene 15 2009-03-01 2006-01-16 2006-01-16 2014-11-19 220885 ENSG00000237506 OTTHUMG00000021947 AF284768 NG_011100 "9461426|19123937" +HGNC:35478 RPSAP16 ribosomal protein SA pseudogene 16 pseudogene pseudogene Approved 1q25.2 01q25.2 2009-03-06 2016-10-05 100270872 ENSG00000235145 OTTHUMG00000035260 NG_010115 19123937 PGOHUM00000296676 +HGNC:35707 RPSAP17 ribosomal protein SA pseudogene 17 pseudogene pseudogene Approved 1q21.3 01q21.3 2009-03-06 2016-10-05 100270873 ENSG00000226855 OTTHUMG00000036074 NG_010120 19123937 PGOHUM00000295903 +HGNC:36106 RPSAP18 ribosomal protein SA pseudogene 18 pseudogene pseudogene Approved 1q23.2 01q23.2 2009-03-06 2015-08-24 388707 ENSG00000224261 OTTHUMG00000031608 NG_010515 19123937 PGOHUM00000295928 +HGNC:36508 RPSAP19 ribosomal protein SA pseudogene 19 pseudogene pseudogene Approved 1p21.2 01p21.2 2009-03-06 2016-10-05 730029 ENSG00000183298 OTTHUMG00000010943 NG_007325 19123937 +HGNC:35595 RPSAP20 ribosomal protein SA pseudogene 20 pseudogene pseudogene Approved 1p32.2 01p32.2 2009-03-06 2015-08-24 127406 ENSG00000229871 OTTHUMG00000008127 NG_010906 19123937 PGOHUM00000295691 +HGNC:36928 RPSAP21 ribosomal protein SA pseudogene 21 pseudogene pseudogene Approved 1q43 01q43 2009-03-06 2015-08-24 729079 ENSG00000226498 OTTHUMG00000040062 NG_009605 19123937 PGOHUM00000296825 +HGNC:36435 RPSAP22 ribosomal protein SA pseudogene 22 pseudogene pseudogene Approved 2p11.2 02p11.2 2009-03-06 2015-08-24 100270874 ENSG00000229648 OTTHUMG00000153083 NG_010126 19123937 PGOHUM00000297944 +HGNC:36742 RPSAP23 ribosomal protein SA pseudogene 23 pseudogene pseudogene Approved 2q14.1 02q14.1 2009-03-06 2015-08-24 100270875 ENSG00000230391 OTTHUMG00000153316 NG_010135 19123937 PGOHUM00000298652 +HGNC:36362 RPSAP24 ribosomal protein SA pseudogene 24 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2015-08-24 391462 ENSG00000235414 OTTHUMG00000154134 NG_010206 19123937 PGOHUM00000298792 +HGNC:36405 RPSAP25 ribosomal protein SA pseudogene 25 pseudogene pseudogene Approved 2q31.1 02q31.1 2009-03-06 2015-08-24 129841 ENSG00000230384 OTTHUMG00000154406 NG_010261 19123937 PGOHUM00000298797 +HGNC:36195 RPSAP26 ribosomal protein SA pseudogene 26 pseudogene pseudogene Approved 2p15 02p15 2009-03-06 2015-08-24 729209 ENSG00000242735 OTTHUMG00000152513 NG_010627 19123937 +HGNC:36650 RPSAP27 ribosomal protein SA pseudogene 27 pseudogene pseudogene Approved 2q34 02q34 2009-03-06 2015-08-24 130429 ENSG00000233869 OTTHUMG00000154639 NG_010650 19123937 PGOHUM00000298862 +HGNC:35612 RPSAP28 ribosomal protein SA pseudogene 28 pseudogene pseudogene Approved 2p13.1 02p13.1 2009-03-06 2015-08-24 391387 ENSG00000214484 OTTHUMG00000152772 NG_011134 19123937 PGOHUM00000298472 +HGNC:36680 RPSAP29 ribosomal protein SA pseudogene 29 pseudogene pseudogene Approved 3q13.13 03q13.13 2009-03-06 2015-08-24 389141 ENSG00000244722 OTTHUMG00000157345 NG_010100 19123937 PGOHUM00000299128 +HGNC:35861 RPSAP30 ribosomal protein SA pseudogene 30 pseudogene pseudogene Approved 3q29 03q29 2009-03-06 2009-03-11 728126 NG_010326 19123937 +HGNC:35558 RPSAP31 ribosomal protein SA pseudogene 31 pseudogene pseudogene Approved 3q27.1 03q27.1 2009-03-06 2015-08-24 391598 ENSG00000234371 OTTHUMG00000156888 NG_010907 19123937 PGOHUM00000299682 +HGNC:50310 RPSAP32 ribosomal protein SA pseudogene 32 pseudogene pseudogene Approved 3p26.3 03p26.3 2014-04-07 2015-08-24 402123 ENSG00000238075 OTTHUMG00000154877 NG_006138 PGOHUM00000298930 +HGNC:35556 RPSAP33 ribosomal protein SA pseudogene 33 pseudogene pseudogene Approved 3q26.2 03q26.2 2009-03-06 2015-08-24 647158 ENSG00000226765 OTTHUMG00000157292 NG_011277 19123937 PGOHUM00000307594 +HGNC:36643 RPSAP34 ribosomal protein SA pseudogene 34 pseudogene pseudogene Approved 4q25 04q25 2009-03-06 2015-08-24 100270876 ENSG00000239939 OTTHUMG00000157535 NG_010142 19123937 PGOHUM00000299946 +HGNC:36447 RPSAP35 ribosomal protein SA pseudogene 35 pseudogene pseudogene Approved 4q26 04q26 2009-03-06 2015-08-24 100270916 ENSG00000237684 OTTHUMG00000059446 NG_010360 19123937 PGOHUM00000300342 +HGNC:35727 RPSAP36 ribosomal protein SA pseudogene 36 pseudogene pseudogene Approved 4q31.21 04q31.21 2009-03-06 2015-08-24 100128888 ENSG00000243175 OTTHUMG00000157578 NG_010623 19123937 PGOHUM00000300389 +HGNC:35844 RPSAP37 ribosomal protein SA pseudogene 37 pseudogene pseudogene Approved 5q23.2 05q23.2 2009-03-06 2015-08-24 100270915 ENSG00000241888 OTTHUMG00000157839 NG_010356 19123937 PGOHUM00000300742 +HGNC:35963 RPSAP38 ribosomal protein SA pseudogene 38 pseudogene pseudogene Approved 5p13.1 05p13.1 2009-03-06 2015-08-24 100130676 ENSG00000239694 OTTHUMG00000157678 NG_010603 19123937 PGOHUM00000300565 +HGNC:37040 RPSAP39 ribosomal protein SA pseudogene 39 pseudogene pseudogene Approved 4q21.21 04q21.21 2009-03-06 2015-08-24 100131161 ENSG00000244002 OTTHUMG00000157504 NG_010466 19123937 PGOHUM00000300272 +HGNC:36828 RPSAP40 ribosomal protein SA pseudogene 40 pseudogene pseudogene Approved 6q25.1 06q25.1 2009-03-06 2015-08-24 100270917 ENSG00000231368 OTTHUMG00000015776 NG_010364 19123937 PGOHUM00000301590 +HGNC:36663 RPSAP41 ribosomal protein SA pseudogene 41 pseudogene pseudogene Approved 6q13 06q13 2009-03-06 2015-08-24 100270918 ENSG00000239626 OTTHUMG00000086817 NG_010368 19123937 PGOHUM00000301849 +HGNC:36265 RPSAP42 ribosomal protein SA pseudogene 42 pseudogene pseudogene Approved 6q23.3 06q23.3 2009-03-06 2015-08-24 100270919 ENSG00000219463 OTTHUMG00000015666 NG_010380 19123937 PGOHUM00000307604 +HGNC:35501 RPSAP43 ribosomal protein SA pseudogene 43 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2015-08-24 643954 ENSG00000216471 OTTHUMG00000015413 NG_010589 19123937 PGOHUM00000301515 +HGNC:36891 RPSAP44 ribosomal protein SA pseudogene 44 pseudogene pseudogene Approved 6p12.1 06p12.1 2009-03-06 2015-08-24 652411 ENSG00000220773 OTTHUMG00000014895 NG_010638 19123937 PGOHUM00000301818 +HGNC:35857 RPSAP45 ribosomal protein SA pseudogene 45 pseudogene pseudogene Approved 6q21 06q21 2009-03-06 2015-08-24 728562 ENSG00000219773 OTTHUMG00000015389 NG_011251 19123937 PGOHUM00000301510 +HGNC:36082 RPSAP46 ribosomal protein SA pseudogene 46 pseudogene pseudogene Approved 7q22.1 07q22.1 2009-03-06 2015-08-24 652624 ENSG00000213394 OTTHUMG00000157104 NG_010431 19123937 PGOHUM00000302368 +HGNC:36162 RPSAP47 ribosomal protein SA pseudogene 47 pseudogene pseudogene Approved 8q21.13 08q21.13 2009-03-06 2015-08-24 389672 ENSG00000188856 OTTHUMG00000158642 NG_010220 19123937 +HGNC:36646 RPSAP48 ribosomal protein SA pseudogene 48 pseudogene pseudogene Approved 8q23.2 08q23.2 2009-03-06 2015-08-24 392262 ENSG00000240590 OTTHUMG00000158689 NG_010379 19123937 PGOHUM00000303354 +HGNC:35660 RPSAP49 ribosomal protein SA pseudogene 49 pseudogene pseudogene Approved 9q22.1 09q22.1 2009-03-06 2015-08-24 401537 ENSG00000226327 OTTHUMG00000020167 NG_010669 19123937 PGOHUM00000304371 +HGNC:35896 RPSAP50 ribosomal protein SA pseudogene 50 pseudogene pseudogene Approved 11q22.3 11q22.3 2009-03-06 2015-08-24 644109 ENSG00000224776 OTTHUMG00000158453 NG_010040 19123937 PGOHUM00000291129 +HGNC:36224 RPSAP51 ribosomal protein SA pseudogene 51 pseudogene pseudogene Approved 12p13.31 12p13.31 2009-03-06 2015-08-24 100271267 ENSG00000244131 OTTHUMG00000157454 NG_010852 19123937 PGOHUM00000291533 +HGNC:35752 RPSAP52 ribosomal protein SA pseudogene 52 pseudogene pseudogene Approved 12q14.3 12q14.3 2009-03-06 2015-08-24 204010 ENSG00000241749 OTTHUMG00000157608 NG_006174 19123937 PGOHUM00000291386 +HGNC:36641 RPSAP53 ribosomal protein SA pseudogene 53 pseudogene pseudogene Approved 13q21.32 13q21.32 2009-03-06 2015-08-24 400141 ENSG00000214263 OTTHUMG00000017039 NG_010038 19123937 PGOHUM00000291983 +HGNC:36373 RPSAP54 ribosomal protein SA pseudogene 54 pseudogene pseudogene Approved 13q12.11 13q12.11 2009-03-06 2015-08-24 642641 ENSG00000213621 OTTHUMG00000016525 NG_011364 19123937 PGOHUM00000292079 +HGNC:36921 RPSAP55 ribosomal protein SA pseudogene 55 pseudogene pseudogene Approved 15q21.3 15q21.3 2009-03-06 2015-08-24 388122 ENSG00000214896 OTTHUMG00000157924 NG_010133 19123937 PGOHUM00000293244 +HGNC:36018 RPSAP56 ribosomal protein SA pseudogene 56 pseudogene pseudogene Approved 16q22.3 16q22.3 2009-03-06 2015-08-24 645656 NG_011353 19123937 PGOHUM00000293655 +HGNC:35889 RPSAP57 ribosomal protein SA pseudogene 57 pseudogene pseudogene Approved 18q21.2 18q21.2 2009-03-06 2015-08-24 390857 ENSG00000267524 OTTHUMG00000158251 NG_011042 19123937 PGOHUM00000294792 +HGNC:36809 RPSAP58 ribosomal protein SA pseudogene 58 other unknown Approved 19p12 19p12 2009-03-06 2015-08-24 388524 ENSG00000225178 OTTHUMG00000158122 NR_003662 19123937 RGD:1560987 RPSAP58 +HGNC:36957 RPSAP59 ribosomal protein SA pseudogene 59 pseudogene pseudogene Approved Xq22.1 Xq22.1 2009-03-06 2015-08-24 100271148 ENSG00000233071 OTTHUMG00000022090 NG_010239 19123937 PGOHUM00000304789 +HGNC:36331 RPSAP60 ribosomal protein SA pseudogene 60 pseudogene pseudogene Approved Xq28 Xq28 2009-03-06 2015-08-24 100271149 ENSG00000228965 OTTHUMG00000024177 NG_010242 19123937 PGOHUM00000304903 +HGNC:36760 RPSAP61 ribosomal protein SA pseudogene 61 pseudogene pseudogene Approved Xp11.3 Xp11.3 2009-03-06 2015-08-24 644464 ENSG00000214016 OTTHUMG00000021400 NG_010579 19123937 PGOHUM00000305031 +HGNC:35583 RPSAP62 ribosomal protein SA pseudogene 62 pseudogene pseudogene Approved Xp11.22 Xp11.22 2009-03-06 2015-08-24 100131469 ENSG00000226299 OTTHUMG00000021611 NG_010739 19123937 PGOHUM00000305084 +HGNC:35581 RPSAP63 ribosomal protein SA pseudogene 63 pseudogene pseudogene Approved Xq26.2 Xq26.2 2009-03-06 2015-08-24 100270755 ENSG00000233260 OTTHUMG00000022445 NG_009640 19123937 PGOHUM00000305328 +HGNC:39642 RPSAP64 ribosomal protein SA pseudogene 64 pseudogene pseudogene Approved 21q22.2 21q22.2 2011-03-17 2015-08-24 100873797 ENSG00000227721 OTTHUMG00000086703 NG_032334 PGOHUM00000306002 +HGNC:51914 RPSAP65 ribosomal protein SA pseudogene 65 pseudogene pseudogene Approved 1p31.3 01p31.3 2015-10-06 2015-10-06 107075109 ENSG00000223683 OTTHUMG00000013352 NG_046548 PGOHUM00000296350 +HGNC:51916 RPSAP66 ribosomal protein SA pseudogene 66 pseudogene pseudogene Approved 17q23.2 17q23.2 2015-10-06 2015-10-06 107075110 ENSG00000266943 OTTHUMG00000180051 NG_046549 PGOHUM00000307545 +HGNC:51918 RPSAP67 ribosomal protein SA pseudogene 67 pseudogene pseudogene Approved 17q24.2 17q24.2 2015-10-06 2015-10-06 107075111 ENSG00000266858 OTTHUMG00000179778 NG_046550 PGOHUM00000307546 +HGNC:51920 RPSAP68 ribosomal protein SA pseudogene 68 pseudogene pseudogene Approved 21p11.2 21p11.2 2015-10-06 2015-10-06 100996520 ENSG00000279990 OTTHUMG00000189475 PGOHUM00000297307 +HGNC:51922 RPSAP69 ribosomal protein SA pseudogene 69 pseudogene pseudogene Approved 3q29 03q29 2015-10-06 2015-10-06 101927158 ENSG00000233487 OTTHUMG00000155521 PGOHUM00000299319 +HGNC:51923 RPSAP70 ribosomal protein SA pseudogene 70 pseudogene pseudogene Approved 4q35.1 04q35.1 2015-10-06 2015-10-06 105377595 ENSG00000250327 OTTHUMG00000160361 PGOHUM00000307597 +HGNC:51924 RPSAP71 ribosomal protein SA pseudogene 71 pseudogene pseudogene Approved 5q35.1 05q35.1 2015-10-06 2015-10-06 107075249 ENSG00000254256 OTTHUMG00000163206 NG_046551 PGOHUM00000301182 +HGNC:51925 RPSAP72 ribosomal protein SA pseudogene 72 pseudogene pseudogene Approved 6q14.1 06q14.1 2015-10-06 2015-10-06 107075112 ENSG00000219361 OTTHUMG00000015093 NG_046552 PGOHUM00000301446 +HGNC:51926 RPSAP73 ribosomal protein SA pseudogene 73 pseudogene pseudogene Approved 7p22.1 07p22.1 2015-10-06 2015-10-06 107075250 ENSG00000274319 OTTHUMG00000187658 NG_046553 PGOHUM00000302513 +HGNC:51928 RPSAP74 ribosomal protein SA pseudogene 74 pseudogene pseudogene Approved 8q21.3 08q21.3 2015-10-06 2015-10-06 107075113 ENSG00000253621 OTTHUMG00000163773 PGOHUM00000303299 +HGNC:51929 RPSAP75 ribosomal protein SA pseudogene 75 pseudogene pseudogene Approved 9q21.13 09q21.13 2015-10-06 2015-10-06 107075114 ENSG00000270954 OTTHUMG00000184697 NG_046554 PGOHUM00000304327 +HGNC:51930 RPSAP76 ribosomal protein SA pseudogene 76 pseudogene pseudogene Approved 9q33.3 09q33.3 2015-10-06 2015-10-06 101927006 ENSG00000235332 OTTHUMG00000020670 PGOHUM00000304053 +HGNC:26809 RPTN repetin protein-coding gene gene with protein product Approved 1q21.3 01q21.3 FLJ39117 EF-hand domain containing 863 2005-06-13 2014-11-19 126638 ENSG00000215853 OTTHUMG00000154095 uc001ezs.1 AK096436 XM_371312 CCDS41397 Q6XPR3 15854042 MGI:1099055 RGD:1311687 RPTN 613259 +HGNC:30287 RPTOR regulatory associated protein of MTOR complex 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "KOG1|Mip1|KIAA1303|raptor" regulatory associated protein of mTOR regulatory associated protein of MTOR, complex 1 "WD repeat domain containing|MTOR complex 1" "362|1332" 2009-05-29 2016-04-01 2016-04-01 57521 ENSG00000141564 OTTHUMG00000177622 uc002jyt.2 NM_020761 "CCDS11773|CCDS54175" Q8N122 "10718198|12150926" MGI:1921620 RGD:1311784 RPTOR 607130 +HGNC:14173 RPUSD1 RNA pseudouridylate synthase domain containing 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "RLUCL|MGC19600" C16orf40 chromosome 16 open reading frame 40 RNA pseudouridylate synthase domain containing 727 2000-12-21 2005-01-31 2005-01-31 2015-08-25 113000 ENSG00000007376 OTTHUMG00000047840 uc002ckb.3 AE006465 NM_058192 "CCDS10426|CCDS81923|CCDS81924" Q9UJJ7 MGI:1919186 RGD:1304934 RPUSD1 +HGNC:24180 RPUSD2 RNA pseudouridylate synthase domain containing 2 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "C18B11|FLJ31409" C15orf19 chromosome 15 open reading frame 19 RNA pseudouridylate synthase domain containing 727 2004-07-02 2005-02-07 2005-01-31 2016-10-05 27079 ENSG00000166133 OTTHUMG00000130031 uc001zmd.3 AK055971 NM_152260 "CCDS10061|CCDS66737" Q8IZ73 12477932 MGI:1918066 RGD:1306147 RPUSD2 +HGNC:28437 RPUSD3 RNA pseudouridylate synthase domain containing 3 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 MGC29784 RNA pseudouridylate synthase domain containing 727 2005-01-31 2014-11-19 285367 ENSG00000156990 OTTHUMG00000128441 uc011atk.3 BC032135 NM_173659 "CCDS2586|CCDS46744" Q6P087 12477932 MGI:2141440 RGD:1307582 RPUSD3 +HGNC:25898 RPUSD4 RNA pseudouridylate synthase domain containing 4 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 FLJ14494 RNA pseudouridylate synthase domain containing 727 2005-01-31 2014-11-19 84881 ENSG00000165526 OTTHUMG00000165815 uc001qde.3 BC014131 NM_032795 "CCDS8469|CCDS53721" Q96CM3 MGI:1919239 RGD:1311268 RPUSD4 +HGNC:10446 RRAD RRAD, Ras related glycolysis inhibitor and calcium channel regulator protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "REM3|RAD" "Ras-related associated with diabetes|RRAD, Ras related glycolysis inihibitor and calcium channel regulator" RGK type GTPase family 1260 1995-12-11 2016-05-16 2016-10-05 6236 ENSG00000166592 OTTHUMG00000137511 uc002eqo.3 L24564 NM_004165 CCDS10824 P55042 "7859947|24992013|25114038|26546438" MGI:1930943 RGD:69357 RRAD 179503 +HGNC:16963 RRAGA Ras related GTP binding A protein-coding gene gene with protein product Approved 9p22.1 09p22.1 "RAGA|FIP-1" Ras-related GTP binding A 2003-07-07 2016-02-23 2016-10-05 10670 ENSG00000155876 OTTHUMG00000019621 uc003znj.4 BC006433 NM_006570 CCDS6488 Q7L523 "7499430|8995684" MGI:1915691 RGD:619804 RRAGA 612194 +HGNC:20242 RRAGAP1 Ras related GTP binding A pseudogene 1 pseudogene pseudogene Approved 14q21.2 14q21.2 RRAGAP "Ras-related GTP binding A pseudogene|Ras-related GTP binding A pseudogene 1" 2003-12-10 2010-03-05 2016-02-23 2016-02-23 100462776 NG_027270 12508121 PGOHUM00000247790 +HGNC:19901 RRAGB Ras related GTP binding B protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 Ras-related GTP binding B 2003-07-07 2016-02-23 2016-02-23 10325 ENSG00000083750 OTTHUMG00000021662 uc004dup.4 X90530 NM_016656 "CCDS14371|CCDS14372" Q5VZM2 "7499430|9394008" MGI:3038613 RGD:619805 RRAGB 300725 +HGNC:19902 RRAGC Ras related GTP binding C protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "GTR2|FLJ13311" Ras-related GTP binding C 2003-07-07 2016-02-23 2016-10-05 64121 ENSG00000116954 OTTHUMG00000000490 uc001ccq.4 AF323609 NM_022157 CCDS430 Q9HB90 11073942 MGI:1858751 RGD:1311760 RRAGC 608267 +HGNC:19903 RRAGD Ras related GTP binding D protein-coding gene gene with protein product Approved 6q15 06q15 "DKFZP761H171|bA11D8.2.1" Ras-related GTP binding D 2003-07-07 2016-02-23 2016-02-23 58528 ENSG00000025039 OTTHUMG00000015200 uc003pnd.5 AF272036 NM_021244 CCDS5022 Q9NQL2 11073942 MGI:1098604 RGD:1310007 RRAGD 608268 +HGNC:10447 RRAS related RAS viral (r-ras) oncogene homolog protein-coding gene gene with protein product Approved 19q13.33 19q13.33 Oncogene RRAS RAS type GTPase family 389 2001-06-22 2014-11-19 6237 ENSG00000126458 OTTHUMG00000183247 uc002pop.2 NM_006270 CCDS12774 P10301 3098437 MGI:98179 RGD:1311443 RRAS 165090 +HGNC:17271 RRAS2 related RAS viral (r-ras) oncogene homolog 2 protein-coding gene gene with protein product Approved 11p15.2 11p15.2 TC21 RAS type GTPase family 389 2001-11-30 2014-11-19 22800 ENSG00000133818 OTTHUMG00000165756 uc001mlf.5 M31468 NM_012250 "CCDS7814|CCDS44544|CCDS53603" P62070 "2108320|8052619" MGI:1914172 RGD:1310793 RRAS2 600098 +HGNC:10448 RRBP1 ribosome binding protein 1 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "ES/130|hES" "ribosome binding protein 1 (dog 180kD homolog)|ribosome binding protein 1 homolog 180kDa (dog)" 1998-03-20 2012-12-07 2016-10-05 6238 ENSG00000125844 OTTHUMG00000031945 uc002wpw.2 AB037819 NM_001042576 CCDS13128 Q9P2E9 8812507 MGI:1932395 RGD:1306536 RRBP1 601418 +HGNC:10449 RREB1 ras responsive element binding protein 1 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 HNT hindsight homolog (drosophila) Zinc fingers C2H2-type 28 1997-08-18 2016-10-05 6239 ENSG00000124782 OTTHUMG00000014201 uc003mxb.4 U26914 XM_006715157 "CCDS34335|CCDS34336|CCDS54963" Q92766 "9367691|18394891" MGI:2443664 RGD:1310904 RREB1 602209 458274 +HGNC:10450 RRH retinal pigment epithelium-derived rhodopsin homolog protein-coding gene gene with protein product Approved 4q25 04q25 peropsin peropsin Opsin receptors 215 1999-06-10 2015-08-25 10692 ENSG00000180245 OTTHUMG00000132045 uc003hzv.4 AF012270 NM_006583 CCDS3687 O14718 9275222 MGI:1097709 RGD:1308948 RRH 605224 +HGNC:10451 RRM1 ribonucleotide reductase catalytic subunit M1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 ribonucleotide reductase M1 polypeptide 1986-01-01 2016-01-14 2016-10-05 6240 ENSG00000167325 OTTHUMG00000133361 uc001lyw.5 X59543 NM_001033 "CCDS7750|CCDS81547" P23921 7557993 MGI:98180 RGD:1592569 RRM1 180410 objectId:2630 1.17.14.1 +HGNC:40512 RRM1-AS1 RRM1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 RRM1 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 106478966 ENSG00000255276 OTTHUMG00000165304 uc057yfu.1 +HGNC:10452 RRM2 ribonucleotide reductase regulatory subunit M2 protein-coding gene gene with protein product Approved 2p25.1 02p25.1 ribonucleotide reductase M2 polypeptide 2001-06-22 2016-01-14 2016-10-05 6241 ENSG00000171848 OTTHUMG00000090449 uc061gpx.1 NM_001034 "CCDS1669|CCDS54334" P31350 MGI:98181 RGD:1598310 RRM2 180390 objectId:2631 1.17.4.1 +HGNC:17296 RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding gene gene with protein product Approved 8q22.3 08q22.3 p53R2 ribonucleotide reductase M2 B (TP53 inducible) 2002-01-14 2016-01-14 2016-10-12 50484 ENSG00000048392 OTTHUMG00000164776 uc003ykn.4 AB036532 NM_015713 "CCDS34932|CCDS55267" Q7LG56 "10716435|10980602|17486094" MGI:2155865 RGD:1306045 LRG_788|http://www.lrg-sequence.org/LRG/LRG_788 RRM2B 604712 168101 objectId:2754 +HGNC:10453 RRM2P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:10454 RRM2P2 ribonucleotide reductase M2 polypeptide pseudogene 2 pseudogene pseudogene Approved 1q23.3 01q23.3 2001-06-22 2014-11-18 6244 ENSG00000236484 OTTHUMG00000034464 NG_012978 PGOHUM00000244310 +HGNC:10455 RRM2P3 ribonucleotide reductase M2 polypeptide pseudogene 3 pseudogene pseudogene Approved Xp11.3 Xp11.3 2001-06-22 2016-10-05 100420159 ENSG00000214018 OTTHUMG00000021394 NG_000870 3311968 PGOHUM00000241254 +HGNC:10456 RRM2P4 ribonucleotide reductase M2 polypeptide pseudogene 4 pseudogene pseudogene Approved Xq27.3 Xq27.3 1986-01-01 2016-10-05 6246 ENSG00000235598 OTTHUMG00000022588 NG_000871 3311968 PGOHUM00000241587 +HGNC:30346 RRN3 RRN3 homolog, RNA polymerase I transcription factor protein-coding gene gene with protein product Approved 16p13.11 16p13.11 "DKFZp566E104|TIF-IA" transcription initiation factor IA "RRN3 RNA polymerase I transcription factor homolog (yeast)|RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)" 2004-08-19 2015-07-22 2015-07-22 54700 ENSG00000085721 OTTHUMG00000129847 uc002dde.4 AF227156 NM_018427 "CCDS10559|CCDS73833" Q9NYV6 "10758157|11250903" MGI:1925255 RGD:1305001 RRN3 605121 +HGNC:30548 RRN3P1 RRN3 homolog, RNA polymerase I transcription factor pseudogene 1 pseudogene pseudogene Approved 16p12.2 16p12.2 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 1 2009-11-11 2015-07-22 2015-07-22 730092 ENSG00000248124 OTTHUMG00000170417 NR_003370 Q2M238 12477932 RGD:6500155 PGOHUM00000261200 +HGNC:37619 RRN3P2 RRN3 homolog, RNA polymerase I transcription factor pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 2 2009-11-11 2015-07-22 2015-07-22 653390 ENSG00000103472 NR_003369 A6NIE6 +HGNC:37620 RRN3P3 RRN3 homolog, RNA polymerase I transcription factor pseudogene 3 pseudogene pseudogene Approved 16p12.2 16p12.2 RNA polymerase I transcription factor homolog (S. cerevisiae) pseudogene 3 2009-11-11 2015-07-22 2015-07-22 100131998 ENSG00000257122 OTTHUMG00000170419 NR_027460 +HGNC:24273 RRNAD1 ribosomal RNA adenine dimethylase domain containing 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "CGI-41|METTL25B" C1orf66 chromosome 1 open reading frame 66 Methyltransferase like 963 2005-05-17 2011-01-28 2011-01-28 2016-06-15 51093 ENSG00000143303 OTTHUMG00000041302 uc001fpu.4 BC011382 NM_015997 "CCDS1154|CCDS44246" Q96FB5 "10810093|310876" MGI:2387197 RGD:1311265 RRNAD1 +HGNC:18785 RRP1 ribosomal RNA processing 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "NNP-1|Nop52|NOP52|RRP1A|D21S2056E" "DNA segment on chromosome 21 (unique) 2056 expressed sequence|Nnp1 homolog, nucleolar protein (Drosophila)" ribosomal RNA processing 1 homolog (S. cerevisiae) 2007-03-26 2013-07-02 2014-11-19 8568 ENSG00000160214 OTTHUMG00000086884 uc002zds.3 U79775 NM_003683 CCDS42951 P56182 "10830953|10341208" MGI:1203500 RGD:1307286 RRP1 610653 +HGNC:23818 RRP1B ribosomal RNA processing 1B protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "Nnp1|RRP1|PPP1R136" protein phosphatase 1, regulatory subunit 136 KIAA0179 "KIAA0179|ribosomal RNA processing 1 homolog B (S. cerevisiae)" Protein phosphatase 1 regulatory subunits 694 2003-12-15 2007-03-26 2013-07-02 2014-11-19 23076 ENSG00000160208 OTTHUMG00000086872 uc002zdk.4 AK124620 NM_015056 CCDS33577 Q14684 MGI:1919712 RGD:1305633 RRP1B 610654 +HGNC:24286 RRP7A ribosomal RNA processing 7 homolog A protein-coding gene gene with protein product Approved 22q13.2 22q13.2 CGI-96 ribosomal RNA processing 7 homolog A (S. cerevisiae) 2008-07-25 2015-07-22 2015-07-22 27341 ENSG00000189306 OTTHUMG00000150891 uc003bcq.4 BC035992 NM_015703 CCDS14036 Q9Y3A4 "10810093|12087473" MGI:1922028 RGD:1311547 RRP7A +HGNC:30454 RRP7BP ribosomal RNA processing 7 homolog B, pseudogene pseudogene pseudogene Approved 22q13.2 22q13.2 dJ222E13.2 RRP7B "ribosomal RNA processing 7 homolog B (S. cerevisiae)|ribosomal RNA processing 7 homolog B (S. cerevisiae), pseudogene" 2008-07-25 2015-02-27 2015-07-22 2015-07-22 91695 ENSG00000182841 OTTHUMG00000150889 NR_002184 Q9NSQ0 PGOHUM00000297549 +HGNC:29030 RRP8 ribosomal RNA processing 8, methyltransferase, homolog (yeast) protein-coding gene gene with protein product Approved 11p15.4 11p15.4 NML "RRP8 methyltransferase homolog (S. cerevisiae)|nucleomethylin" KIAA0409 KIAA0409 2005-10-27 2009-02-23 2009-02-23 2016-10-04 23378 ENSG00000132275 OTTHUMG00000165503 uc001med.4 AB007869 NM_015324 CCDS31411 O43159 9455477 MGI:1914251 RGD:1308302 RRP8 615818 +HGNC:16829 RRP9 ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast) protein-coding gene gene with protein product Approved 3p21.2 03p21.2 U3-55K RNU3IP2 RNA, U3 small nucleolar interacting protein 2 WD repeat domain containing 362 2003-04-14 2006-10-24 2008-02-26 2016-10-05 9136 ENSG00000114767 OTTHUMG00000156930 uc003dbw.3 AJ001340 NM_004704 CCDS2837 O43818 "9418896|12032086" MGI:2384313 RGD:1307881 RRP9 +HGNC:29100 RRP12 ribosomal RNA processing 12 homolog protein-coding gene gene with protein product Approved 10q24.1 10q24.1 KIAA0690 "KIAA0690|ribosomal RNA processing 12 homolog (S. cerevisiae)" 2004-01-22 2006-11-06 2015-07-22 2016-10-05 23223 ENSG00000052749 OTTHUMG00000018855 uc057vea.1 NM_015179 "CCDS7457|CCDS44467|CCDS60605" Q5JTH9 9734811 MGI:2147437 RGD:1591867 RRP12 +HGNC:24255 RRP15 ribosomal RNA processing 15 homolog protein-coding gene gene with protein product Approved 1q41 01q41 CGI-115 KIAA0507 "KIAA0507|ribosomal RNA processing 15 homolog (S. cerevisiae)" 2007-01-24 2015-07-22 2015-08-25 51018 ENSG00000067533 OTTHUMG00000039494 uc001hlj.3 NM_016052 CCDS1520 Q9Y3B9 15769876 MGI:1914473 RGD:1306106 RRP15 611193 +HGNC:21374 RRP36 ribosomal RNA processing 36 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 dJ20C7.4 C6orf153 "chromosome 6 open reading frame 153|ribosomal RNA processing 36 homolog (S. cerevisiae)" 2003-06-11 2010-07-06 2015-07-22 2015-09-09 88745 ENSG00000124541 OTTHUMG00000014715 uc003otp.2 BC011933 NM_033112 CCDS34453 Q96EU6 20038530 MGI:2385053 RGD:2321693 RRP36 613475 +HGNC:17083 RRS1 ribosome biogenesis regulator homolog protein-coding gene gene with protein product Approved 8q13.1 08q13.1 KIAA0112 RRS1 ribosome biogenesis regulator homolog (S. cerevisiae) 2003-03-06 2015-07-22 2015-07-22 23212 ENSG00000179041 OTTHUMG00000164765 uc003xwa.3 BC001811 NM_015169 CCDS6189 Q15050 "10688653|19465021" MGI:1929721 RGD:1311403 RRS1 +HGNC:50465 RRS1-AS1 RRS1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 8q13.1 08q13.1 2014-04-30 2014-04-30 100505676 ENSG00000246145 OTTHUMG00000164956 NR_040434 +HGNC:10457 RS1 retinoschisin 1 protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 XLRS1 RS retinoschisis (X-linked, juvenile) 1 2001-06-22 2008-07-29 2016-10-12 6247 ENSG00000102104 OTTHUMG00000021216 uc004cyo.4 AF014459 NM_000330 CCDS14187 O15537 "9326935|17804407" MGI:1336189 RGD:1642515 "X-Linked Juvenile Retinoschisis|http://www.LOVD.nl/RS1|Mutations of the X-linked Retinoschisis Gene|http://www.retina-international.org/files/sci-news/xlrsmut.htm|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=RS1|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/eye/home.php?select_db=RS1|LRG_702|http://www.lrg-sequence.org/LRG/LRG_702" RS1 300839 118411 +HGNC:25634 RSAD1 radical S-adenosyl methionine domain containing 1 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 FLJ11164 2004-11-08 2015-08-25 55316 ENSG00000136444 OTTHUMG00000162126 uc002iqw.2 AK002026 NM_018346 CCDS11569 Q9HA92 12477932 MGI:3039628 RGD:1592414 RSAD1 +HGNC:30908 RSAD2 radical S-adenosyl methionine domain containing 2 protein-coding gene gene with protein product Approved 2p25.2 02p25.2 "cig5|viperin|vig1" 2004-11-08 2014-11-19 91543 ENSG00000134321 OTTHUMG00000090352 uc002qyp.2 AF442151 NM_080657 CCDS1656 Q8WXG1 11752458 MGI:1929628 RGD:620495 RSAD2 607810 +HGNC:25642 RSBN1 round spermatid basic protein 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "FLJ11220|ROSBIN" 2004-08-11 2016-10-05 54665 ENSG00000081019 OTTHUMG00000011938 uc001edq.4 AK002082 NM_018364 CCDS862 Q5VWQ0 12477932 MGI:2444993 RGD:1307231 RSBN1 615858 +HGNC:24765 RSBN1L round spermatid basic protein 1 like protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "FLJ42526|FLJ45813|MGC71764" round spermatid basic protein 1-like 2004-08-11 2016-03-15 2016-10-05 222194 ENSG00000187257 OTTHUMG00000155517 uc010ldt.2 AK124517 NM_198467 CCDS43607 Q6PCB5 12477932 MGI:3036237 RGD:1308748 RSBN1L +HGNC:10458 RSC1A1 regulator of solute carriers 1 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 RS1 regulatory solute carrier protein, family 1, member 1 1996-04-24 2016-09-29 2016-10-05 6248 ENSG00000215695 OTTHUMG00000067830 uc010obn.2 "BN000122|X82877" NM_006511 CCDS161 Q92681 MGI:3526447 RSC1A1 601966 +HGNC:18118 RSF1 remodeling and spacing factor 1 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "XAP8|RSF-1|p325" HBXAP hepatitis B virus x associated protein PHD finger proteins 88 2002-02-12 2006-05-25 2006-05-25 2014-11-19 51773 ENSG00000048649 OTTHUMG00000150433 uc001oyn.4 "AF380176|AF227948" NM_016578 CCDS8253 Q96T23 "11788598|12972596" MGI:2682305 RGD:1311245 RSF1 608522 +HGNC:41439 RSF1-IT1 RSF1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 11q14.1 11q14.1 RSF1 intronic transcript 1 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874308 ENSG00000255409 OTTHUMG00000166670 uc058fun.1 +HGNC:41438 RSF1-IT2 RSF1 intronic transcript 2 non-coding RNA RNA, long non-coding Approved 11q14.1 11q14.1 RSF1 intronic transcript 2 (non-protein coding) 2011-05-24 2015-02-25 2015-02-25 100874307 ENSG00000254985 OTTHUMG00000166669 uc058ful.1 +HGNC:28127 RSG1 REM2 and RAB like small GTPase 1 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 MGC10731 Rem/Rab-Similar GTPase 1 C1orf89 "chromosome 1 open reading frame 89|REM2 and RAB-like small GTPase 1" 2005-05-27 2011-02-22 2016-01-25 2016-01-25 79363 ENSG00000132881 OTTHUMG00000002214 uc001ayd.4 BC008702 NM_030907 CCDS171 Q9BU20 19767740 MGI:1923416 RGD:1561421 RSG1 +HGNC:24534 RSL1D1 ribosomal L1 domain containing 1 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "PBK1|L12|DKFZP564M182|CSIG|UTP30" 2005-02-09 2015-08-25 26156 ENSG00000171490 OTTHUMG00000129824 uc002dbp.3 AY154473 NM_015659 CCDS10551 O76021 "15334068|9859858" MGI:1913659 RGD:1359295 RSL1D1 615874 +HGNC:18479 RSL24D1 ribosomal L24 domain containing 1 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "HRP-L30-iso|L30|RPL24L|RPL24" C15orf15 chromosome 15 open reading frame 15 2002-05-23 2009-02-27 2009-02-27 2016-10-05 51187 ENSG00000137876 OTTHUMG00000131957 uc002acn.4 AF201949 NM_016304 CCDS10152 Q9UHA3 "12808088|11707418" MGI:2681840 RGD:1309784 RSL24D1 613262 +HGNC:13979 RSL24D1P1 ribosomal L24 domain containing 1 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "RPL24p|dJ97D16.2" "RPL30BP|RSL24D1P" "ribosomal protein L30B pseudogene|ribosomal L24 domain containing 1 pseudogene" 2003-11-27 2010-03-05 2010-03-05 2016-10-05 100129755 ENSG00000218069 OTTHUMG00000014482 NG_009885 PGOHUM00000243097 +HGNC:37867 RSL24D1P2 ribosomal L24 domain containing 1 pseudogene 2 pseudogene pseudogene Approved 2p15 02p15 2010-03-05 2014-11-19 100129162 ENSG00000230595 OTTHUMG00000152521 NG_023155 PGOHUM00000240064 +HGNC:37883 RSL24D1P3 ribosomal L24 domain containing 1 pseudogene 3 pseudogene pseudogene Approved 7q11.21 07q11.21 2010-03-05 2010-03-05 2014-11-19 100130721 ENSG00000231556 OTTHUMG00000156562 NG_023002 PGOHUM00000232836 +HGNC:37884 RSL24D1P4 ribosomal L24 domain containing 1 pseudogene 4 pseudogene pseudogene Approved 1q43 01q43 RSL24D1P19 ribosomal L24 domain containing 1 pseudogene 19 2010-03-05 2010-03-05 2010-03-05 2014-11-19 391183 ENSG00000215800 OTTHUMG00000039856 NG_028107 PGOHUM00000245283 +HGNC:37870 RSL24D1P5 ribosomal L24 domain containing 1 pseudogene 5 pseudogene pseudogene Approved 12q14.2 12q14.2 2010-03-05 2014-11-19 100129941 ENSG00000257664 OTTHUMG00000169979 NG_022995 PGOHUM00000239490 +HGNC:37876 RSL24D1P6 ribosomal L24 domain containing 1 pseudogene 6 pseudogene pseudogene Approved 20q11.21 20q11.21 dJ836N17.3 RPL24P1 ribosomal protein L24 pseudogene 1 2010-03-05 2010-03-05 2010-03-05 2016-10-05 140757 ENSG00000224452 OTTHUMG00000032207 NG_001000 PGOHUM00000247510 +HGNC:37877 RSL24D1P7 ribosomal L24 domain containing 1 pseudogene 7 pseudogene pseudogene Approved 8p23.2 08p23.2 2010-03-05 2010-03-05 2014-11-19 100129861 NG_028195 PGOHUM00000249201 +HGNC:37873 RSL24D1P8 ribosomal L24 domain containing 1 pseudogene 8 pseudogene pseudogene Approved 19p13.2 19p13.2 2010-03-05 2014-11-19 100462809 ENSG00000237273 OTTHUMG00000156414 NG_021758 PGOHUM00000234508 +HGNC:37880 RSL24D1P9 ribosomal L24 domain containing 1 pseudogene 9 pseudogene pseudogene Approved 18q21.2 18q21.2 2010-03-05 2010-03-05 2014-11-19 100128991 ENSG00000265402 OTTHUMG00000179695 NG_023017 PGOHUM00000234932 +HGNC:37875 RSL24D1P10 ribosomal L24 domain containing 1 pseudogene 10 pseudogene pseudogene Approved 5q23.1 05q23.1 2010-03-05 2014-11-19 100130699 NG_022991 PGOHUM00000235376 +HGNC:37881 RSL24D1P11 ribosomal L24 domain containing 1 pseudogene 11 pseudogene pseudogene Approved 18q21.31 18q21.31 2010-03-05 2010-03-05 2014-11-19 284288 ENSG00000231544 OTTHUMG00000180257 NG_028175 RSL24D1P11 PGOHUM00000235071 +HGNC:12371 RSPH1 radial spoke head 1 homolog protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "FLJ32753|RSP44|RSPH10A|CILD24" meichroacidin TSGA2 "testis specific A2 homolog (mouse)|radial spoke head 1 homolog (Chlamydomonas)" 2000-05-17 2007-06-25 2016-04-04 2016-04-04 89765 ENSG00000160188 OTTHUMG00000086804 uc002zbg.4 AB006536 XM_005261208 "CCDS13688|CCDS68210" Q8WYR4 "9403069|9578619|17451891" MGI:1194909 RGD:1307712 RSPH1 609314 360491 +HGNC:21054 RSPH3 radial spoke 3 homolog protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "dJ111C20.1|RSP3" RSHL2 "radial spokehead-like 2|radial spoke 3 homolog (Chlamydomonas)" 2003-05-12 2007-06-26 2016-04-04 2016-04-04 83861 ENSG00000130363 OTTHUMG00000015924 uc063soj.1 AF353618 NM_031924 CCDS5260 Q86UC2 12477932 MGI:1914082 RGD:1311306 RSPH3 615876 435581 +HGNC:21558 RSPH4A radial spoke head 4 homolog A protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "dJ412I7.1|FLJ37974|RSPH6B|CILD11" RSHL3 "radial spokehead-like 3|radial spoke head 4 homolog A (Chlamydomonas)" 2003-06-24 2009-02-17 2016-04-04 2016-04-04 345895 ENSG00000111834 OTTHUMG00000015444 uc003pxe.3 NM_001010892 "CCDS34521|CCDS55051" Q5TD94 19200523 MGI:3027894 RGD:1307229 RSPH4A 612647 178082 +HGNC:14241 RSPH6A radial spoke head 6 homolog A protein-coding gene gene with protein product Approved 19q13.3 19q13.3 "RSP4|RSP6|RSPH4B" RSHL1 "radial spokehead-like 1|radial spoke head 6 homolog A (Chlamydomonas)" 2001-04-05 2009-11-18 2016-04-04 2016-04-04 81492 ENSG00000104941 OTTHUMG00000182482 uc002pdm.4 AL136761 NM_030785 CCDS12675 Q9H0K4 11237735 MGI:1927643 RGD:1306786 RSPH6A 607548 +HGNC:21057 RSPH9 radial spoke head 9 homolog protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "FLJ30845|CILD12" "MRPS18AL1|C6orf206" "mitochondrial ribosomal protein S18A-like 1|chromosome 6 open reading frame 206|radial spoke head 9 homolog (Chlamydomonas)" 2003-05-12 2009-02-17 2016-04-04 2016-04-04 221421 ENSG00000172426 OTTHUMG00000014746 uc003ovw.3 AK055407 NM_152732 "CCDS4905|CCDS55005" Q9H1X1 19200523 MGI:1922814 RGD:1310693 RSPH9 612648 178077 +HGNC:27362 RSPH10B radial spoke head 10 homolog B protein-coding gene gene with protein product Approved 7p22.1 07p22.1 radial spoke head 10 homolog B (Chlamydomonas) 2007-06-26 2016-04-04 2016-10-05 222967 ENSG00000155026 OTTHUMG00000152378 uc010ktd.1 NM_173565 CCDS34598 P0C881 16507594 MGI:1922386 RGD:1311893 RSPH10B +HGNC:34385 RSPH10B2 radial spoke head 10 homolog B2 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 radial spoke head 10 homolog B2 (Chlamydomonas) 2008-07-04 2016-04-04 2016-04-04 728194 ENSG00000169402 OTTHUMG00000151856 uc003sqw.1 NM_001099697 CCDS43552 B2RC85 MGI:1922386 RSPH10B2 +HGNC:13437 RSPH14 radial spoke head 14 homolog protein-coding gene gene with protein product Approved 22q11.22-q11.23 22q11.22-q11.23 RTDR1 "rhabdoid tumor deletion region gene 1|radial spoke head 14 homolog (Chlamydomonas)" 2001-09-27 2014-09-05 2016-01-18 2016-10-11 27156 ENSG00000100218 OTTHUMG00000150602 AF133587 NM_014433 CCDS13803 Q9UHP6 12477932 MGI:1918486 RGD:1305601 605663 +HGNC:21679 RSPO1 R-spondin 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "FLJ40906|RSPONDIN" R-spondin homolog (Xenopus laevis) Endogenous ligands 542 2005-08-08 2011-06-29 2016-10-05 284654 ENSG00000169218 OTTHUMG00000004321 uc031txn.2 AK098225 NM_173640 "CCDS41304|CCDS55590|CCDS55591" Q2MKA7 MGI:2183426 RGD:1565558 RSPO1 609595 118415 +HGNC:28583 RSPO2 R-spondin 2 protein-coding gene gene with protein product Approved 8q23.1 08q23.1 MGC35555 R-spondin 2 homolog (Xenopus laevis) Endogenous ligands 542 2005-08-08 2011-06-29 2015-08-25 340419 ENSG00000147655 OTTHUMG00000164893 uc003yms.4 AK123023 NM_178565 "CCDS6307|CCDS64953|CCDS83314" Q6UXX9 15469841 MGI:1922667 RGD:1562331 RSPO2 610575 +HGNC:20866 RSPO3 R-spondin 3 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 FLJ14440 THSD2 "thrombospondin, type I, domain containing 2|R-spondin 3 homolog (Xenopus laevis)" Endogenous ligands 542 2003-04-29 2005-08-08 2011-06-29 2015-08-25 84870 ENSG00000146374 OTTHUMG00000015521 uc003qar.5 BC022367 NM_032784 CCDS5135 Q9BXY4 "10842357|15469841" MGI:1920030 RGD:1563246 RSPO3 610574 +HGNC:16175 RSPO4 R-spondin 4 protein-coding gene gene with protein product Approved 20p13 20p13 dJ824F16.3 C20orf182 "chromosome 20 open reading frame 182|R-spondin family, member 4" Endogenous ligands 542 2001-07-17 2005-08-08 2011-06-29 2014-11-19 343637 ENSG00000101282 OTTHUMG00000031651 uc002wej.4 AK122609 XM_297816 "CCDS42845|CCDS42846" Q2I0M5 15469841 MGI:1924467 RGD:1563415 RSPO4 610573 118419 +HGNC:29420 RSPRY1 ring finger and SPRY domain containing 1 protein-coding gene gene with protein product Approved 16q13 16q13 KIAA1972 Ring finger proteins 58 2006-02-17 2014-11-19 89970 ENSG00000159579 OTTHUMG00000133462 uc002elb.4 AB075852 NM_133368 CCDS10775 Q96DX4 11853319 MGI:1914860 RGD:1308847 RSPRY1 616585 460740 +HGNC:24152 RSRC1 arginine and serine rich coiled-coil 1 protein-coding gene gene with protein product Approved 3q25.32 03q25.32 "MGC12197|BM-011|SRrp53|SFRS21" splicing factor, arginine/serine-rich 21 arginine/serine-rich coiled-coil 1 2005-02-25 2016-06-06 2016-06-06 51319 ENSG00000174891 OTTHUMG00000158758 uc062pjk.1 AF208853 NM_016625 "CCDS3181|CCDS63822" Q96IZ7 "15798186|19065146" MGI:1914130 RGD:1304968 RSRC1 613352 +HGNC:30559 RSRC2 arginine and serine rich coiled-coil 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 FLJ11021 arginine/serine-rich coiled-coil 2 2007-02-13 2016-06-06 2016-06-06 65117 ENSG00000111011 OTTHUMG00000167572 uc001ucr.4 AF161432 NM_023012 CCDS31920 Q7L4I2 17203224 MGI:1913489 RGD:1564882 RSRC2 +HGNC:25234 RSRP1 arginine and serine rich protein 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 DJ465N24.2.1 C1orf63 "chromosome 1 open reading frame 63|arginine/serine-rich protein 1" 2005-05-16 2014-02-19 2016-06-06 2016-10-05 57035 ENSG00000117616 OTTHUMG00000043611 NM_020317 CCDS260 Q9BUV0 12477932 MGI:106498 RGD:1359529 +HGNC:10462 RSS Russell Silver syndrome phenotype phenotype only Approved 17q25 17q25 SRS Silver-Russell syndrome 1995-01-26 2011-02-24 140821 "1633648|8403458|9733042|11161811" +HGNC:10464 RSU1 Ras suppressor protein 1 protein-coding gene gene with protein product Approved 10p13 10p13 "RSP-1|FLJ31034" 1993-07-27 2014-11-19 6251 ENSG00000148484 OTTHUMG00000017740 uc001iol.4 AK055596 "NM_012425|NM_152724" "CCDS7112|CCDS31157" Q15404 8288261 MGI:103040 RGD:1591781 RSU1 179555 +HGNC:31114 RSU1P1 Ras suppressor protein 1 pseudogene 1 pseudogene pseudogene Approved 10q11.21 10q11.21 Y214H10.6 2004-05-27 2014-11-18 100129622 ENSG00000230425 OTTHUMG00000018019 NG_008398 PGOHUM00000261964 +HGNC:44391 RSU1P2 Ras suppressor protein 1 pseudogene 2 pseudogene pseudogene Approved 10q11.21 10q11.21 2012-09-20 2015-01-30 100133308 ENSG00000232554 OTTHUMG00000185442 NR_024472 PGOHUM00000238444 +HGNC:44392 RSU1P3 Ras suppressor protein 1 pseudogene 3 pseudogene pseudogene Approved 10q21.1 10q21.1 2012-09-20 2012-09-20 100419964 ENSG00000213659 OTTHUMG00000018244 NG_025504 PGOHUM00000238799 +HGNC:30310 RTBDN retbindin protein-coding gene gene with protein product Approved 19p13 19p13 FLJ36353 2006-03-22 2014-11-19 83546 ENSG00000132026 OTTHUMG00000180482 uc002mvj.5 AY028917 NM_031429 "CCDS12283|CCDS45994|CCDS59355|CCDS59356" Q9BSG5 12107411 MGI:2443686 RGD:1308534 RTBDN 609553 +HGNC:17981 RTCA RNA 3'-terminal phosphate cyclase protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "RPC|RTC1" RTCD1 "RTC domain containing 1|RNA terminal phosphate cyclase domain 1" 2002-01-10 2012-03-30 2012-03-30 2016-10-05 8634 ENSG00000137996 OTTHUMG00000010920 uc001dtc.4 Y11651 XM_005271298 "CCDS768|CCDS44178" O00442 9184239 MGI:1913618 RGD:1303111 RTCA 611286 6.5.1.4 +HGNC:50573 RTCA-AS1 RTCA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p21.2 01p21.2 2014-05-21 2014-05-21 100506007 ENSG00000224616 OTTHUMG00000040490 NR_110434 +HGNC:26935 RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "HSPC117|FAAP" "focal adhesion-associated protein|tRNA-splicing ligase RtcB homolog" C22orf28 chromosome 22 open reading frame 28 2006-07-04 2013-05-22 2013-05-22 2016-04-19 51493 ENSG00000100220 OTTHUMG00000030300 BC016707 NM_014306 CCDS13905 Q9Y3I0 "11042152|21209330|21311021" MGI:106379 RGD:1303261 613901 6.5.1.3 +HGNC:15888 RTEL1 regulator of telomere elongation helicase 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "bK3184A7.3|NHL|DKFZP434C013|KIAA1088|RTEL" C20orf41 chromosome 20 open reading frame 41 DNA helicases 1167 2001-06-21 2004-10-29 2004-10-29 2016-10-05 51750 ENSG00000258366 OTTHUMG00000032992 uc002yfu.3 AB029011 NM_032957 "CCDS13530|CCDS13531|CCDS63331|CCDS74751" Q9NZ71 "10655513|15210109" MGI:2139369 RGD:1306721 RTEL1 608833 330673 +HGNC:44095 RTEL1-TNFRSF6B RTEL1-TNFRSF6B readthrough (NMD candidate) other readthrough Approved 20q13.33 20q13.33 2012-06-27 2013-05-09 2013-05-09 100533107 ENSG00000026036 OTTHUMG00000170363 uc061ynz.1 NR_037882 +HGNC:44213 RTEL1P1 regulator of telomere elongation helicase 1 pseudogene 1 pseudogene pseudogene Approved 4q25 04q25 2012-07-09 2012-07-09 100421429 ENSG00000251441 OTTHUMG00000161065 NG_025241 PGOHUM00000246032 +HGNC:28996 RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component protein-coding gene gene with protein product Approved 15q15.1 15q15.1 KIAA0252 "KIAA0252|Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" Paf1/RNA polymerase II complex 1029 2004-03-03 2005-07-20 2015-07-08 2016-10-05 23168 ENSG00000137815 OTTHUMG00000133744 uc001zny.3 D87440 NM_015138 CCDS32200 Q92541 "15632063|17576814" MGI:1309480 RGD:1310654 RTF1 611633 +HGNC:15890 RTFDC1 replication termination factor 2 domain containing 1 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 "HSPC164|CDAO5" C20orf43 chromosome 20 open reading frame 43 2001-06-21 2012-10-29 2012-10-29 2016-10-05 51507 ENSG00000022277 OTTHUMG00000032801 uc002xxt.4 AF161513 NM_016407 "CCDS13453|CCDS63316|CCDS63317" Q9BY42 MGI:1913654 RGD:1311072 RTFDC1 +HGNC:10466 RTKN rhotekin protein-coding gene gene with protein product Approved 2p13.1 02p13.1 B5 Pleckstrin homology domain containing 682 1996-11-15 2014-11-19 6242 ENSG00000114993 OTTHUMG00000129955 uc002slc.4 AF049227 NM_001015055 "CCDS1941|CCDS33226|CCDS42699" Q9BST9 "9073523|10940294" MGI:107371 RGD:727874 RTKN 602288 +HGNC:19364 RTKN2 rhotekin 2 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "Em:AC024597.2|bA531F24.1|FLJ39352" PLEKHK1 pleckstrin homology domain containing, family K member 1 Pleckstrin homology domain containing 682 2004-02-05 2007-12-14 2007-12-14 2016-10-05 219790 ENSG00000182010 OTTHUMG00000018299 uc001jlw.5 BC025765 NM_145307 "CCDS7263|CCDS73140" Q8IZC4 15504364 MGI:2158417 RGD:1304834 RTKN2 +HGNC:14665 RTL1 retrotransposon-like 1 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 "PEG11|MART1|Mar1" 2006-02-27 2016-10-12 388015 ENSG00000254656 OTTHUMG00000167573 uc010txj.1 NM_001134888 CCDS53910 A6NKG5 "16155747|15854907|12796779" MGI:2656842 RGD:11378340 LRG_1059|http://www.lrg-sequence.org/LRG/LRG_1059 RTL1 611896 159161 +HGNC:10467 RTN1 reticulon 1 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 NSP neuroendocrine-specific protein 1993-08-24 2016-10-05 6252 ENSG00000139970 OTTHUMG00000028947 uc001xek.3 L10333 XM_011537063 "CCDS9740|CCDS9741" Q16799 8275708 MGI:1933947 RGD:620986 RTN1 600865 +HGNC:10468 RTN2 reticulon 2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "NSP2|NSPL1" "NSP-like protein 1|Neuroendocrine-specific protein-like 1" SPG12 spastic paraplegia 12 (autosomal dominant) 1997-07-01 2016-01-15 6253 ENSG00000125744 OTTHUMG00000182123 uc002pcc.5 AF038540 NM_005619 "CCDS12665|CCDS12666|CCDS46114" O75298 "8812484|9530622|22232211" MGI:107612 RGD:1303245 RTN2 603183 180211 +HGNC:10469 RTN3 reticulon 3 protein-coding gene gene with protein product Approved 11q13 11q13 "NSPL2|NSPLII|ASYIP|HAP|RTN3-A1" "neuroendocrine-specific protein-like 2|NSP-like protein II|isoforme III|ASY interacting protein|homolog of ASY protein" 1998-12-11 2014-11-19 10313 ENSG00000133318 OTTHUMG00000168056 uc001nxo.4 AF059524 NM_006054 "CCDS8048|CCDS8049|CCDS8050|CCDS41664|CCDS58141|CCDS58142|CCDS58143" O95197 10331947 MGI:1339970 RGD:620988 RTN3 604249 +HGNC:19212 RTN3P1 reticulon 3 pseudogene 1 pseudogene pseudogene Approved 4q31.21 04q31.21 RTN3PS reticulon 3 pseudogene 2003-07-14 2011-01-14 2011-01-14 2014-11-19 152905 ENSG00000251333 OTTHUMG00000161594 NG_005175 12832288 RTN3P1 PGOHUM00000246096 +HGNC:14085 RTN4 reticulon 4 protein-coding gene gene with protein product Approved 2p16.1 02p16.1 "NSP-CL|KIAA0886|NOGO|ASY" 2000-11-28 2015-08-25 57142 ENSG00000115310 OTTHUMG00000129337 uc002ryg.4 AF087901 NM_001321904 "CCDS1851|CCDS1852|CCDS42683|CCDS42684|CCDS42685" Q9NQC3 "10667797|10773680" MGI:1915835 RGD:620989 RTN4 604475 objectId:2838 +HGNC:18647 RTN4IP1 reticulon 4 interacting protein 1 protein-coding gene gene with protein product Approved 6q21 06q21 NIMP 2002-05-23 2014-11-18 84816 ENSG00000130347 OTTHUMG00000015304 uc003prj.4 AF336861 XM_017011375 CCDS5056 Q8WWV3 MGI:2178759 RGD:1563384 RTN4IP1 610502 +HGNC:18601 RTN4R reticulon 4 receptor protein-coding gene gene with protein product Approved 22q11.21 22q11.21 NOGOR 2002-04-30 2016-10-05 65078 ENSG00000040608 OTTHUMG00000150572 uc002zrv.4 AF283463 NM_023004 CCDS13777 Q9BZR6 11201742 MGI:2136886 RGD:620810 RTN4R 605566 +HGNC:21329 RTN4RL1 reticulon 4 receptor like 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "NGRH2|NgR3|DKFZp547J144" nogo-66 receptor homolog 2 reticulon 4 receptor-like 1 2004-01-30 2016-04-01 2016-04-01 146760 ENSG00000185924 OTTHUMG00000180184 uc002ftp.4 AF532859 NM_178568 CCDS45569 Q86UN2 MGI:2661375 RGD:727812 RTN4RL1 610461 +HGNC:23053 RTN4RL2 reticulon 4 receptor-like 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "NgR2|NGRH1" 2004-01-30 2014-11-19 349667 ENSG00000186907 OTTHUMG00000167028 uc010rjt.4 BK001302 NM_178570 CCDS7957 Q86UN3 MGI:2669796 RGD:727797 RTN4RL2 610462 +HGNC:28580 RTP1 receptor transporter protein 1 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "MGC35450|Z3CXXC1" "receptor transporting protein 1|zinc finger, 3CxxC-type 1" "receptor transporter protein 1|receptor (chemosensory) transporter protein 1" "Zinc fingers 3CxxC-type|Receptor transporter proteins" "137|719" 2006-02-07 2016-05-05 2016-05-05 132112 ENSG00000175077 OTTHUMG00000149886 uc003frg.3 BC034744 NM_153708 CCDS3287 P59025 "16271481|15550249|16720576" MGI:2685450 RGD:1560980 RTP1 609137 +HGNC:32486 RTP2 receptor transporter protein 2 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "MGC78665|Z3CXXC2" "receptor transporting protein 2|zinc finger, 3CxxC-type 2" "receptor transporter protein 2|receptor (chemosensory) transporter protein 2" "Zinc fingers 3CxxC-type|Receptor transporter proteins" "137|719" 2006-02-07 2016-05-05 2016-05-05 344892 ENSG00000198471 OTTHUMG00000156458 uc003fro.1 AY562236 NM_001004312 CCDS33911 Q5QGT7 "16271481|15550249|16720576" MGI:2685451 RGD:1565722 RTP2 609138 +HGNC:15572 RTP3 receptor transporter protein 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "LTM1|Z3CXXC3" zinc finger, 3CxxC-type 3 TMEM7 "transmembrane protein 7|receptor transporter protein 3|receptor (chemosensory) transporter protein 3" "Zinc fingers 3CxxC-type|Receptor transporter proteins" "137|719" 2001-04-24 2006-02-07 2016-05-05 2016-10-05 83597 ENSG00000163825 OTTHUMG00000133483 uc003cps.2 AJ312776 NM_031440 CCDS2740 Q9BQQ7 "16271481|15550249|16720576" MGI:2446841 RGD:1310546 RTP3 607181 +HGNC:23992 RTP4 receptor transporter protein 4 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 "IFRG28|Z3CXXC4" zinc finger, 3CxxC-type 4 "receptor transporter protein 4|receptor (chemosensory) transporter protein 4" "Zinc fingers 3CxxC-type|Receptor transporter proteins" "137|719" 2006-02-07 2016-05-05 2016-05-05 64108 ENSG00000136514 OTTHUMG00000156459 uc003frm.4 BC013161 NM_022147 CCDS33910 Q96DX8 "16271481|15550249|16720576" MGI:1915025 RGD:1306974 RTP4 609350 +HGNC:26585 RTP5 receptor transporter protein 5 (putative) protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "FLJ33590|Z3CXXC5" zinc finger, 3CxxC-type 5 "C2orf85|CXXC11" "chromosome 2 open reading frame 85|CXXC finger protein 11|receptor (chemosensory) transporter protein 5 (putative)" "Zinc fingers 3CxxC-type|Receptor transporter proteins" "137|719" 2009-01-27 2014-02-20 2016-05-05 2016-05-05 285093 ENSG00000188011 OTTHUMG00000151341 AK090909 NM_173821 CCDS42843 Q14D33 +HGNC:18654 RTTN rotatin protein-coding gene gene with protein product Approved 18q22.1 18q22.1 DKFZP434G145 2002-07-11 2008-08-01 25914 ENSG00000176225 OTTHUMG00000178694 uc002lkp.4 AL117635 NM_173630 CCDS42443 Q86VV8 11900971 MGI:2179288 RGD:1306706 RTTN 610436 319033 +HGNC:28991 RUBCN RUN and cysteine rich domain containing beclin 1 interacting protein protein-coding gene gene with protein product Approved 3q29 03q29 "rubicon|rundataxin" KIAA0226 "KIAA0226|RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein" 2005-01-21 2015-10-16 2016-01-28 2016-10-12 9711 ENSG00000145016 OTTHUMG00000155452 D86979 XM_032901 "CCDS43195|CCDS46987" Q92622 "9039502|19270693|20826435" MGI:1915160 RGD:1305422 LRG_1093|http://www.lrg-sequence.org/LRG/LRG_1093 613516 406905 +HGNC:20420 RUBCNL RUN and cysteine rich domain containing beclin 1 interacting protein like protein-coding gene gene with protein product Approved 13q14.13 13q14.13 FLJ21562 "C13orf18|KIAA0226L" "chromosome 13 open reading frame 18|KIAA0226 like" 2003-02-20 2016-07-26 2016-07-26 2016-10-05 80183 ENSG00000102445 OTTHUMG00000016868 uc001vbi.6 AK025215 NM_025113 "CCDS31970|CCDS66543|CCDS66544|CCDS66545|CCDS73569|CCDS66542" Q9H714 23522960 MGI:2685590 RGD:1304929 +HGNC:19760 RUFY1 RUN and FYVE domain containing 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "FLJ22251|ZFYVE12|RABIP4" Zinc fingers FYVE-type 81 2002-11-26 2015-08-25 80230 ENSG00000176783 OTTHUMG00000130913 uc003mka.3 AF361055 NM_001040451 "CCDS4445|CCDS34312" Q96T51 11877430 MGI:2429762 RGD:1305099 RUFY1 610327 +HGNC:19761 RUFY2 RUN and FYVE domain containing 2 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "RABIP4R|FLJ10063|KIAA1537|ZFYVE13" Zinc fingers FYVE-type 81 2002-11-26 2016-10-05 55680 ENSG00000204130 OTTHUMG00000018353 uc001job.4 AF461266 NM_017987 "CCDS41534|CCDS44414|CCDS60544|CCDS81470" Q8WXA3 11877430 MGI:1917682 RGD:1592188 RUFY2 610328 +HGNC:30285 RUFY3 RUN and FYVE domain containing 3 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "RIPx|KIAA0871|Singar1|ZFYVE30" single axon-related 1 Zinc fingers FYVE-type 81 2005-11-28 2015-01-14 22902 ENSG00000018189 OTTHUMG00000129910 uc003hfr.4 AF112221 NM_014961 "CCDS3547|CCDS34001|CCDS47068|CCDS75138" Q7L099 17439943 MGI:106484 RGD:1565242 RUFY3 611194 +HGNC:24804 RUFY4 RUN and FYVE domain containing 4 protein-coding gene gene with protein product Approved 2q35 02q35 "FLJ46536|ZFYVE31" Zinc fingers FYVE-type 81 2006-07-14 2015-01-14 285180 ENSG00000188282 OTTHUMG00000155235 uc061shw.1 AK128393 NM_198483 Q6ZNE9 MGI:3588214 RGD:1560678 RUFY4 +HGNC:25418 RUNDC1 RUN domain containing 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 DKFZp761H0421 2004-02-27 2015-08-25 146923 ENSG00000198863 OTTHUMG00000180659 uc002ici.1 AL831813 NM_173079 CCDS11448 Q96C34 12477932 MGI:2144506 RGD:1307490 RUNDC1 +HGNC:16984 RUNDC3A RUN domain containing 3A protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "RPIP8|RAP2IP" 2007-08-20 2014-11-19 10900 ENSG00000108309 OTTHUMG00000169259 uc002igl.5 AF055026 NM_006695 "CCDS45698|CCDS45699|CCDS59294" Q59EK9 9523700 MGI:1858752 RGD:735057 RUNDC3A 605448 +HGNC:51344 RUNDC3A-AS1 RUNDC3A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.31 17q21.31 2014-10-10 2014-10-10 101926996 ENSG00000267750 OTTHUMG00000132629 "AK055254|BC051705" NR_110802 +HGNC:30286 RUNDC3B RUN domain containing 3B protein-coding gene gene with protein product Approved 7q21.12 07q21.12 "RPIP9|RPIB9" 2007-08-20 2014-11-18 154661 ENSG00000105784 OTTHUMG00000131035 uc011khe.3 NM_138290 "CCDS5609|CCDS47635|CCDS47636" Q96NL0 12645870 MGI:2685286 RGD:1587590 RUNDC3B +HGNC:10471 RUNX1 runt related transcription factor 1 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 "PEBP2A2|AMLCR1" aml1 oncogene "AML1|CBFA2" "acute myeloid leukemia 1|runt-related transcription factor 1" 1991-08-20 2016-01-25 2016-10-12 861 ENSG00000159216 OTTHUMG00000086299 uc002yuk.6 X79549 XM_011529766 "CCDS13639|CCDS42922|CCDS46646" Q01196 "1427868|7835892" MGI:99852 RGD:2283 LRG_482|http://www.lrg-sequence.org/LRG/LRG_482 RUNX1 151385 118423 +HGNC:16623 RUNX1-IT1 RUNX1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 21q22.12 21q22.12 FLJ20856 C21orf96 "chromosome 21 open reading frame 96|RUNX1 intronic transcript 1 (non-protein coding)" 2003-10-01 2011-11-23 2015-02-25 2015-02-25 80215 AK024509 NR_026812 +HGNC:1535 RUNX1T1 RUNX1 translocation partner 1 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "CDR|ETO|MTG8|ZMYND2" "AML1T1|CBFA2T1" "core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related|runt related transcription factor 1; translocated to, 1 (cyclin D related)" Zinc fingers MYND-type 87 1993-12-16 2005-01-22 2016-03-21 2016-10-05 862 ENSG00000079102 OTTHUMG00000164066 uc022axv.2 D43638 "NM_004349|NM_175635" "CCDS6256|CCDS6257|CCDS47891|CCDS56544|CCDS75766|CCDS75767" Q06455 "1391946|9790752" MGI:104793 RGD:1305490 RUNX1T1 133435 171663 +HGNC:10472 RUNX2 runt related transcription factor 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "AML3|PEBP2A1|PEBP2aA1" "CCD|CBFA1|CCD1" runt-related transcription factor 2 1994-11-02 2016-01-25 2016-10-05 860 ENSG00000124813 OTTHUMG00000014774 uc011dvy.2 AF001450 NM_004348 "CCDS43467|CCDS43468|CCDS64443" Q13950 7835892 MGI:99829 RGD:2282 RUNX2 600211 118429 +HGNC:10473 RUNX3 runt related transcription factor 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "AML2|PEBP2A3" CBFA3 runt-related transcription factor 3 1994-11-02 2016-01-25 2016-10-05 864 ENSG00000020633 OTTHUMG00000003316 uc001bjq.4 BC013362 NM_004350 "CCDS257|CCDS30633" Q13761 7835892 MGI:102672 RGD:620082 RUNX3 600210 +HGNC:17153 RUSC1 RUN and SH3 domain containing 1 protein-coding gene gene with protein product Approved 1q22 01q22 NESCA 2003-02-24 2016-10-05 23623 ENSG00000160753 OTTHUMG00000013910 uc001fkp.4 AB026894 XM_017000891 "CCDS1112|CCDS41410|CCDS41411|CCDS41412" Q9BVN2 10760598 MGI:1919546 RGD:2322139 RUSC1 +HGNC:26680 RUSC1-AS1 RUSC1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q22 01q22 FLJ35976 C1orf104 "chromosome 1 open reading frame 104|RUSC1 antisense RNA 1 (non-protein coding)" 2005-06-03 2011-04-28 2012-08-15 2014-11-19 284618 ENSG00000225855 OTTHUMG00000013912 uc057lpu.1 AK093295 NM_001039517 Q66K80 14702039 +HGNC:23625 RUSC2 RUN and SH3 domain containing 2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 KIAA0375 2003-12-02 2016-10-05 9853 ENSG00000198853 OTTHUMG00000019861 uc003zww.4 AB002373 XM_048462 CCDS35008 Q8N2Y8 9205841 MGI:2140371 RGD:1592688 RUSC2 611053 +HGNC:10474 RUVBL1 RuvB like AAA ATPase 1 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "TIP49|NMP238|RVB1|TIP49a|Pontin52|ECP54|TIH1|Rvb1|INO80H" "pontin|INO80 complex subunit H" "RuvB (E coli homolog)-like 1|RuvB-like 1 (E. coli)|RuvB-like AAA ATPase|RuvB-like AAA ATPase 1" "AAA ATPases|INO80 complex |DNA helicases| SRCAP complex" "413|595|1167|1329" 1998-11-19 2016-01-27 2016-10-05 8607 ENSG00000175792 OTTHUMG00000159658 uc003ekh.4 AF070735 XM_017007356 "CCDS3047|CCDS82833" Q9Y265 "9774387|9588198" MGI:1928760 RGD:68373 RUVBL1 603449 +HGNC:40514 RUVBL1-AS1 RUVBL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q21.3 03q21.3 RUVBL1 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874089 ENSG00000239608 OTTHUMG00000159660 uc062nnn.1 NR_046645 +HGNC:10475 RUVBL2 RuvB like AAA ATPase 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "RVB2|TIP48|TIP49b|Reptin52|ECP51|TIH2|INO80J|Rvb2" "reptin|INO80 complex subunit J" "RuvB (E coli homolog)-like 2|RuvB-like 2 (E. coli)" "AAA ATPases|INO80 complex |DNA helicases| SRCAP complex" "413|595|1167|1329" 1999-09-07 2016-03-07 2016-03-07 10856 ENSG00000183207 OTTHUMG00000183333 uc002plr.2 AF155138 NM_006666 CCDS42588 Q9Y230 "10428817|10998447" MGI:1342299 RGD:1306509 RUVBL2 604788 +HGNC:10476 RVNP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-04 +HGNC:20993 RWDD1 RWD domain containing 1 protein-coding gene gene with protein product Approved 6q22.1 06q22.1 PTD013 2003-04-30 2016-10-05 51389 ENSG00000111832 OTTHUMG00000015441 uc003pxd.5 AF092134 NM_015952 "CCDS34520|CCDS43496" Q9H446 10810093 MGI:1913771 RGD:631337 RWDD1 +HGNC:31055 RWDD1P1 RWD domain containing 1 pseudogene 1 pseudogene pseudogene Approved 15q25.1 15q25.1 2004-03-31 2014-11-19 404551 NG_028864 PGOHUM00000247192 +HGNC:31794 RWDD1P3 RWD domain containing 1 pseudogene 3 pseudogene pseudogene Approved 12q21.2 12q21.2 RWDD1L1 RWD domain containing 1-like 1 2004-08-02 2010-10-15 2010-10-15 2010-10-15 727789 XR_015128 PGOHUM00000239868 +HGNC:21385 RWDD2A RWD domain containing 2A protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "MGC13523|dJ747H23.2" RWDD2 RWD domain containing 2 2003-06-11 2007-07-17 2007-07-17 2016-10-05 112611 ENSG00000013392 OTTHUMG00000015109 uc003pjx.5 BC010930 NM_033411 CCDS4998 Q9UIY3 MGI:1916769 RGD:1306231 RWDD2A +HGNC:1302 RWDD2B RWD domain containing 2B protein-coding gene gene with protein product Approved 21q21.3 21q21.3 GL011 C21orf6 chromosome 21 open reading frame 6 1999-05-14 2007-07-17 2007-07-17 2016-10-05 10069 ENSG00000156253 OTTHUMG00000078805 uc002yms.4 AF212232 NM_001320724 CCDS13582 P57060 10729227 MGI:1858215 RGD:1305062 RWDD2B +HGNC:21393 RWDD3 RWD domain containing 3 protein-coding gene gene with protein product Approved 1p21.3 01p21.3 DKFZP566K023 2003-06-11 2016-10-05 25950 ENSG00000122481 OTTHUMG00000010910 uc009wdu.3 BC010936 NM_015485 "CCDS41357|CCDS44177" Q9Y3V2 11230166 MGI:1920420 RGD:620472 RWDD3 615875 +HGNC:23750 RWDD4 RWD domain containing 4 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 MGC10198 "FAM28A|RWDD4A" "family with sequence similarity 28, member A|RWD domain containing 4A" 2005-10-04 2010-09-30 2010-09-30 2015-09-09 201965 ENSG00000182552 OTTHUMG00000160632 uc063bgm.1 BC017472 NM_152682 "CCDS34111|CCDS77986" Q6NW29 MGI:2681000 RGD:1564132 RWDD4 +HGNC:23753 RWDD4P1 RWD domain containing 4 pseudogene 1 pseudogene pseudogene Approved 7q22.3 07q22.3 FAM28BP family with sequence similarity 28, member B pseudogene 2010-09-30 2004-07-12 2014-11-19 100419903 ENSG00000244490 OTTHUMG00000157404 NG_026613 PGOHUM00000233515 +HGNC:23754 RWDD4P2 RWD domain containing 4 pseudogene 2 pseudogene pseudogene Approved 7p14.1 07p14.1 FAM28CP family with sequence similarity 28, member C pseudogene 2010-09-30 2004-07-12 2014-11-19 647009 ENSG00000175741 OTTHUMG00000155282 NG_005562 PGOHUM00000232667 +HGNC:19718 RXFP1 relaxin/insulin like family peptide receptor 1 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 RXFPR1 LGR7 leucine-rich repeat-containing G protein-coupled receptor 7 Relaxin family peptide receptors 217 2003-12-04 2006-05-09 2016-03-31 2016-10-05 59350 ENSG00000171509 OTTHUMG00000149973 uc003ipz.4 AF190500 NM_021634 "CCDS43276|CCDS58929|CCDS58930|CCDS75204|CCDS75205|CCDS75206" Q9HBX9 "15956688|16507880" MGI:2682211 RGD:1302973 RXFP1 606654 objectId:351 +HGNC:17318 RXFP2 relaxin/insulin like family peptide receptor 2 protein-coding gene gene with protein product Approved 13q13.1 13q13.1 "GREAT|GPR106|INSL3R|RXFPR2" LGR8 leucine-rich repeat-containing G protein-coupled receptor 8 Relaxin family peptide receptors 217 2004-02-10 2006-05-09 2016-03-31 2016-10-05 122042 ENSG00000133105 OTTHUMG00000016690 uc001utt.4 AF403384 NM_130806 "CCDS9342|CCDS53862" Q8WXD0 "12217959|12970298|15956688|16507880" MGI:2153463 RGD:1309449 RXFP2 606655 objectId:352 +HGNC:24883 RXFP3 relaxin/insulin like family peptide receptor 3 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "SALPR|GPCR135|RXFPR3" RLN3R1 "relaxin 3 receptor 1|relaxin family peptide receptor 3" Relaxin family peptide receptors 217 2004-11-15 2006-03-15 2016-03-31 2016-10-05 51289 ENSG00000182631 OTTHUMG00000090685 uc003jic.3 D88437 NM_016568 CCDS3900 Q9NSD7 "15956688|16507880" MGI:2441827 RGD:1311550 RXFP3 609445 objectId:353 +HGNC:14666 RXFP4 relaxin/insulin like family peptide receptor 4 protein-coding gene gene with protein product Approved 1q22 01q22 "GPCR142|RXFPR4" "GPR100|RLN3R2" "G protein-coupled receptor 100|relaxin 3 receptor 2|relaxin family peptide receptor 4" Relaxin family peptide receptors 217 2001-02-28 2006-03-15 2016-03-31 2016-03-31 339403 ENSG00000173080 OTTHUMG00000017463 uc010pgs.3 AB065617 NM_181885 CCDS1124 Q8TDU9 "15956688|16507880" MGI:2182926 RGD:2322332 RXFP4 609043 objectId:354 +HGNC:10477 RXRA retinoid X receptor alpha protein-coding gene gene with protein product Approved 9q34.2 09q34.2 NR2B1 nuclear receptor subfamily 2 group B member 1 retinoid X receptor, alpha Nuclear hormone receptors 71 1991-11-14 2015-11-11 2016-10-05 6256 ENSG00000186350 OTTHUMG00000020887 uc004cfb.3 X52773 NM_002957 CCDS35172 P19793 2159111 MGI:98214 RGD:3610 RXRA 180245 objectId:610 +HGNC:10478 RXRB retinoid X receptor beta protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "NR2B2|H-2RIIBP|RCoR-1" nuclear receptor subfamily 2 group B member 2 retinoid X receptor, beta Nuclear hormone receptors 71 1991-11-14 2015-11-11 2016-10-05 6257 ENSG00000204231 OTTHUMG00000031298 uc003odb.5 M84820 NM_021976 "CCDS4768|CCDS59007" P28702 8257090 MGI:98215 RGD:3611 RXRB 180246 objectId:611 +HGNC:10479 RXRG retinoid X receptor gamma protein-coding gene gene with protein product Approved 1q23.3 01q23.3 NR2B3 nuclear receptor subfamily 2 group B member 3 retinoid X receptor, gamma Nuclear hormone receptors 71 1991-11-14 2015-11-11 2016-10-05 6258 ENSG00000143171 OTTHUMG00000034626 uc001gda.4 U38480 NM_006917 "CCDS1248|CCDS72970" P48443 8034312 MGI:98216 RGD:620046 RXRG 180247 objectId:612 +HGNC:10480 RYBP RING1 and YY1 binding protein protein-coding gene gene with protein product Approved 3p13 03p13 "YEAF1|AAP1|DEDAF" "YY1 and E4TF1 associated factor 1|ring1 interactor RYBP|apoptin-associating protein 1|death effector domain-associated factor" Zinc fingers RANBP2-type 89 2000-01-28 2016-10-05 23429 ENSG00000163602 OTTHUMG00000159190 uc003dpe.4 AF179286 NM_012234 Q8N488 10369680 MGI:1929059 RGD:1307077 RYBP 607535 +HGNC:10481 RYK receptor-like tyrosine kinase protein-coding gene gene with protein product Approved 3q22.2 03q22.2 "D3S3195|RYK1|JTK5" JTK5A "JTK5A protein tyrosine kinase|RYK receptor-like tyrosine kinase" Receptor Tyrosine Kinases 321 1993-09-28 2012-02-28 2016-10-05 6259 ENSG00000163785 OTTHUMG00000159750 uc032sdh.1 S59184 NM_001005861 "CCDS75016|CCDS77820" P34925 8386829 MGI:101766 RGD:620549 RYK 600524 objectId:1849 2.7.10.1 +HGNC:10482 RYKP1 receptor-like tyrosine kinase pseudogene 1 pseudogene pseudogene Approved 17p13.2 17p13.2 JTK5 "RYKL1|JTK5B|RYKP" "RYK receptor-like tyrosine kinase-like 1|JTK5B protein tyrosine kinase|RYK receptor-like tyrosine kinase pseudogene|RYK receptor-like tyrosine kinase pseudogene 1" 1993-09-28 2010-03-05 2012-02-28 2014-11-19 6260 ENSG00000263219 OTTHUMG00000177729 AC087742 NG_005810 "8386829|10066802" +HGNC:10483 RYR1 ryanodine receptor 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "RYR|PPP1R137" protein phosphatase 1, regulatory subunit 137 "MHS|MHS1|CCO" "central core disease of muscle|ryanodine receptor 1 (skeletal)" "Ryanodine receptors|Protein phosphatase 1 regulatory subunits" "287|694" 1989-12-01 2016-01-25 2016-10-12 6261 ENSG00000196218 OTTHUMG00000182403 uc002oit.4 J05200 XM_006723317 "CCDS33011|CCDS42563" P21817 "1862346|16621918" MGI:99659 RGD:1586637 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=RYR1|LRG_766|http://www.lrg-sequence.org/LRG/LRG_766" RYR1 180901 118437 objectId:747 +HGNC:10484 RYR2 ryanodine receptor 2 protein-coding gene gene with protein product Approved 1q43 01q43 "ARVC2|VTSIP" ARVD2 "arrhythmogenic right ventricular dysplasia 2|ryanodine receptor 2 (cardiac)" "Ryanodine receptors|EF-hand domain containing" "287|863" 1989-12-07 2016-01-25 2016-10-12 6262 ENSG00000198626 OTTHUMG00000039543 uc001hyl.2 X91869 NM_001035 CCDS55691 Q92736 "2380170|8406504|11159936" MGI:99685 RGD:620314 "Gene Connection for the Heart - Catecholaminergic Polymorphic Ventricular Tachy cardia database|http://www.fsm.it/cardmoc/|LRG_402|http://www.lrg-sequence.org/LRG/LRG_402" RYR2 180902 118443 objectId:748 +HGNC:10485 RYR3 ryanodine receptor 3 protein-coding gene gene with protein product Approved 15q13.3-q14 15q13.3-q14 "Ryanodine receptors|EF-hand domain containing" "287|863" 1993-05-12 2016-10-11 6263 ENSG00000198838 OTTHUMG00000172253 uc284npy.1 XM_017022468 "CCDS45210|CCDS58351" Q15413 8276408 MGI:99684 RGD:68952 RYR3 180903 objectId:749 +HGNC:3165 S1PR1 sphingosine-1-phosphate receptor 1 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "edg-1|D1S3362|CD363" EDG1 endothelial differentiation, sphingolipid G-protein-coupled receptor, 1 "Sphingosine 1-phosphate receptors|CD molecules" "206|471" 1998-05-15 2008-04-30 2008-04-30 2016-10-05 1901 ENSG00000170989 OTTHUMG00000010835 uc001dud.3 M31210 NM_001400 CCDS777 P21453 "2160972|9488656" MGI:1096355 RGD:61958 S1PR1 601974 objectId:275 +HGNC:3169 S1PR2 sphingosine-1-phosphate receptor 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "Gpcr13|H218|AGR16" EDG5 endothelial differentiation, sphingolipid G-protein-coupled receptor, 5 Sphingosine 1-phosphate receptors 206 1999-03-09 2008-04-30 2008-04-30 2016-10-05 9294 ENSG00000267534 OTTHUMG00000180399 uc002mnl.3 AF034780 NM_004230 CCDS12229 O95136 "8087418|8878560" MGI:99569 RGD:68334 S1PR2 605111 454902 objectId:276 +HGNC:3167 S1PR3 sphingosine-1-phosphate receptor 3 protein-coding gene gene with protein product Approved 9q22.1 09q22.1 EDG-3 sphingosine-1-phosphate receptor 3 EDG3 endothelial differentiation, sphingolipid G-protein-coupled receptor, 3 Sphingosine 1-phosphate receptors 206 1998-05-15 2008-04-30 2008-04-30 2016-10-05 1903 ENSG00000213694 OTTHUMG00000020173 uc004aqe.5 AF022139 NM_005226 CCDS6680 Q99500 "8878560|9409733" MGI:1339365 RGD:1583843 S1PR3 601965 objectId:277 +HGNC:3170 S1PR4 sphingosine-1-phosphate receptor 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 EDG6 "endothelial differentiation, G-protein-coupled receptor 6|endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 6" Sphingosine 1-phosphate receptors 206 1998-12-09 2008-04-30 2008-04-30 2014-11-19 8698 ENSG00000125910 OTTHUMG00000180672 uc002lxg.4 AJ000479 NM_003775 CCDS12105 O95977 9790765 MGI:1333809 RGD:1304801 S1PR4 603751 objectId:278 +HGNC:14299 S1PR5 sphingosine-1-phosphate receptor 5 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Edg-8 EDG8 endothelial differentiation, sphingolipid G-protein-coupled receptor, 8 Sphingosine 1-phosphate receptors 206 2001-01-02 2008-04-30 2008-04-30 2014-11-19 53637 ENSG00000180739 OTTHUMG00000180581 uc002mou.3 AK074661 NM_030760 CCDS12240 Q9H228 10799507 MGI:2150641 RGD:620566 S1PR5 605146 objectId:279 +HGNC:10509 S7 surface antigen (chromosome 7) 2 other unknown Approved 7 07 SA7-2 2001-06-22 2013-04-02 6264 +HGNC:10510 S8 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:10511 S9 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:10505 S11 surface antigen (X-linked) 2 other unknown Approved Xq26-q28 Xq26-q28 2001-06-22 2013-04-02 6267 +HGNC:10506 S12 surface antigen (X-linked) 3 other unknown Approved X X 2001-06-22 2013-04-02 6268 +HGNC:10507 S13 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:10508 S14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:10486 S100A1 S100 calcium binding protein A1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 S100-alpha S100A S100 calcium-binding protein A1 "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1991-07-10 2001-11-28 2016-10-05 6271 ENSG00000160678 OTTHUMG00000037041 uc001fck.1 BC014392 NM_006271 CCDS1047 P23297 1998503 MGI:1338917 RGD:3614 S100A1 176940 +HGNC:10492 S100A2 S100 calcium binding protein A2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 CAN19 S100L S100 calcium-binding protein A2 "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1993-10-04 2001-11-28 2016-10-05 6273 ENSG00000196754 OTTHUMG00000035031 uc057lbs.1 BC002829 NM_005978 CCDS1044 P29034 8341667 S100A2 176993 +HGNC:10493 S100A3 S100 calcium binding protein A3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 S100E S100 calcium-binding protein A3 S100 calcium binding proteins 459 1993-10-04 2001-11-28 2016-10-05 6274 ENSG00000188015 OTTHUMG00000013550 uc001fca.2 BC012893 NM_002960 CCDS1043 P33764 8341667 MGI:1338849 RGD:620260 S100A3 176992 +HGNC:10494 S100A4 S100 calcium binding protein A4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "P9KA|18A2|PEL98|42A|FSP1" fibroblast-specific protein-1 "MTS1|CAPL" "S100 calcium-binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog)|S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog)" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1989-06-30 2006-09-11 2016-10-05 6275 ENSG00000196154 OTTHUMG00000013546 uc057lbo.1 BC016300 NM_002961 CCDS1042 P26447 3155863 MGI:1330282 RGD:3245 S100A4 114210 +HGNC:10495 S100A5 S100 calcium binding protein A5 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 S100D S100 calcium-binding protein A5 "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1993-10-04 2001-11-28 2016-10-05 6276 ENSG00000196420 OTTHUMG00000013547 uc001fbx.3 Z18954 NM_002962 CCDS1041 P33763 8341667 MGI:1338915 RGD:1308996 S100A5 176991 +HGNC:10496 S100A6 S100 calcium binding protein A6 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "2A9|PRA|CABP" CACY "S100 calcium-binding protein A6 (calcyclin)|S100 calcium binding protein A6 (calcyclin)" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1986-01-01 2006-09-11 2016-10-05 6277 ENSG00000197956 OTTHUMG00000013549 uc057lbh.1 BC001431 NM_014624 CCDS1040 P06703 MGI:1339467 RGD:620264 S100A6 114110 +HGNC:10497 S100A7 S100 calcium binding protein A7 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 S100A7c PSOR1 "S100 calcium-binding protein A7 (psoriasin 1)|S100 calcium binding protein A7 (psoriasin 1)" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1992-10-08 2006-09-11 2016-10-05 6278 ENSG00000143556 OTTHUMG00000013123 uc001fbv.2 BC034687 NM_002963 CCDS1039 P31151 1940442 RGD:7740121 S100A7 600353 +HGNC:21657 S100A7A S100 calcium binding protein A7A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 S100A7f "S100A15|S100A7L1" "S100 calcium binding protein A15|S100 calcium binding protein A7-like 1" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 2003-08-06 2006-09-11 2006-09-11 2016-10-05 338324 ENSG00000184330 OTTHUMG00000013122 uc001fbt.1 AY189118 NM_176823 CCDS30872 Q86SG5 11230159 RGD:1593779 S100A7A +HGNC:21655 S100A7L2 S100 calcium binding protein A7 like 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 s100a7b S100 calcium binding protein A7-like 2 EF-hand domain containing 863 2003-10-15 2015-11-11 2015-11-11 645922 ENSG00000197364 OTTHUMG00000013129 uc010pdx.3 NM_001045479 Q5SY68 S100A7L2 +HGNC:21654 S100A7P1 S100 calcium binding protein A7 pseudogene 1 pseudogene pseudogene Approved 1q22 01q22 s100a7d S100A7L3 S100 calcium binding protein A7-like 3 2003-10-15 2006-09-11 2006-09-11 2011-10-11 127481 NG_009595 +HGNC:21656 S100A7P2 S100 calcium binding protein A7 pseudogene 2 pseudogene pseudogene Approved 1q21.1 01q21.1 s100a7e S100A7L4 S100 calcium binding protein A7-like 4 (pseudogene) 2003-10-15 2006-09-11 2006-09-11 2014-11-19 375027 NG_009592 +HGNC:10498 S100A8 S100 calcium binding protein A8 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "P8|MRP8|60B8AG|CGLA" "CAGA|CFAG" "S100 calcium-binding protein A8 (calgranulin A)|S100 calcium binding protein A8 (calgranulin A)" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1989-05-19 2006-09-11 2016-10-05 6279 ENSG00000143546 OTTHUMG00000013124 uc001fbs.3 BC005928 NM_002964 CCDS1038 P05109 MGI:88244 RGD:620265 S100A8 123885 +HGNC:10499 S100A9 S100 calcium binding protein A9 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "P14|MIF|NIF|LIAG|MRP14|MAC387|60B8AG|CGLB" "CAGB|CFAG" "S100 calcium-binding protein A9 (calgranulin B)|S100 calcium binding protein A9 (calgranulin B)" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1989-05-19 2006-09-11 2016-10-05 6280 ENSG00000163220 OTTHUMG00000013125 uc001fbq.3 BC047681 NM_002965 CCDS1036 P06702 MGI:1338947 RGD:620267 S100A9 123886 +HGNC:10487 S100A10 S100 calcium binding protein A10 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "P11|42C|CLP11" annexin II tetramer (AIIt) p11 subunit "ANX2LG|CAL1L" "S100 calcium-binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))|S100 calcium binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))" S100 calcium binding proteins 459 1992-09-10 2006-09-11 2016-10-05 6281 ENSG00000197747 OTTHUMG00000013068 uc001ezl.4 BC015973 NM_002966 CCDS1008 P60903 8276421 MGI:1339468 RGD:628655 S100A10 114085 +HGNC:10488 S100A11 S100 calcium binding protein A11 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 S100C "S100 calcium-binding protein A11 (calgizzarin)|S100 calcium binding protein A11 (calgizzarin)" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1997-10-30 2006-09-11 2016-10-05 6282 ENSG00000163191 OTTHUMG00000013069 uc001ezn.3 D38583 NM_005620 CCDS1009 P31949 8985590 MGI:1338798 RGD:1303295 S100A11 603114 +HGNC:10491 S100A11P1 S100 calcium binding protein A11 pseudogene 1 pseudogene pseudogene Approved 7q22.1 07q22.1 "S100A14|S100A11P" "S100 calcium-binding protein A14 (calgizzarin)|S100 calcium binding protein A11 pseudogene" 2000-03-03 2010-03-05 2010-03-05 2016-10-05 729659 ENSG00000237632 OTTHUMG00000157211 AC004668 NG_008400 PGOHUM00000233507 +HGNC:37840 S100A11P2 S100 calcium binding protein A11 pseudogene 2 pseudogene pseudogene Approved 7p14.2 07p14.2 2010-03-05 2014-11-19 347701 ENSG00000236592 OTTHUMG00000155025 NG_002702 PGOHUM00000233177 +HGNC:37842 S100A11P3 S100 calcium binding protein A11 pseudogene 3 pseudogene pseudogene Approved 11q13.4 11q13.4 2010-03-05 2014-11-19 645474 NG_022983 PGOHUM00000242351 +HGNC:37841 S100A11P4 S100 calcium binding protein A11 pseudogene 4 pseudogene pseudogene Approved 12q14.2 12q14.2 2010-09-30 2014-11-19 100506938 NG_027989 PGOHUM00000239828 +HGNC:10489 S100A12 S100 calcium binding protein A12 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "p6|MRP6|CGRP|CAAF1|CAGC|ENRAGE" "S100 calcium-binding protein A12 (calgranulin C)|S100 calcium binding protein A12 (calgranulin C)" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1997-10-30 2006-09-11 2016-10-05 6283 ENSG00000163221 OTTHUMG00000013127 uc001fbr.2 BC070294 NM_005621 CCDS1037 P80511 8985590 S100A12 603112 +HGNC:10490 S100A13 S100 calcium binding protein A13 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 S100 calcium-binding protein A13 S100 calcium binding proteins 459 1997-10-30 2001-11-28 2016-10-05 6284 ENSG00000189171 OTTHUMG00000036641 uc057lce.1 AK097132 NM_005979 CCDS30874 Q99584 8985590 MGI:109581 RGD:1304919 S100A13 601989 +HGNC:18901 S100A14 S100 calcium binding protein A14 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "S100A15|BCMP84" S100 calcium binding proteins 459 2002-10-30 2016-10-05 57402 ENSG00000189334 OTTHUMG00000035030 uc001fce.4 AY007220 NM_020672 CCDS1046 Q9HCY8 11944983 MGI:1913416 RGD:1595063 S100A14 607986 +HGNC:20441 S100A16 S100 calcium binding protein A16 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "S100F|DT1P1A7|MGC17528" "S100 calcium binding proteins|EF-hand domain containing" "459|863" 2003-10-28 2016-10-05 140576 ENSG00000188643 OTTHUMG00000013545 uc001fcd.2 BC010541 NM_080388 CCDS1045 Q96FQ6 9417904 MGI:1915110 RGD:1306770 S100A16 +HGNC:10500 S100B S100 calcium binding protein B protein-coding gene gene with protein product Approved 21q22.3 21q22.3 S100beta S100 calcium binding protein, beta (neural) "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1988-06-27 2006-09-11 2014-11-18 6285 ENSG00000160307 OTTHUMG00000090715 uc002zju.2 M59488 NM_006272 CCDS13736 P04271 "2394738|1998503" MGI:98217 RGD:3615 S100B 176990 +HGNC:1436 S100G S100 calcium binding protein G protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "CABP9K|CABP1" calbindin-D9K CALB3 calbindin 3, (vitamin D-dependent calcium-binding protein) "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1992-11-20 2004-10-07 2001-11-28 2014-11-19 795 ENSG00000169906 OTTHUMG00000021194 uc004cxn.2 NM_004057 CCDS14176 P29377 "1610358|1379540" MGI:104528 RGD:2253 S100G 302020 +HGNC:10504 S100P S100 calcium binding protein P protein-coding gene gene with protein product Approved 4p16.1 04p16.1 S100 calcium-binding protein P "S100 calcium binding proteins|EF-hand domain containing" "459|863" 1993-10-04 2001-11-28 2016-10-05 6286 ENSG00000163993 OTTHUMG00000090491 uc003gjl.4 X65614 NM_005980 CCDS3391 P25815 "8341667|7759097" S100P 600614 +HGNC:25768 S100PBP S100P binding protein protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "FLJ12903|S100PBPR" S100P binding protein 1 2005-12-01 2014-11-18 64766 ENSG00000116497 OTTHUMG00000003955 uc001bwc.5 BX647916 NM_022753 CCDS30666 Q96BU1 12477932 MGI:1921898 RGD:1564943 S100PBP 611889 +HGNC:30367 S100Z S100 calcium binding protein Z protein-coding gene gene with protein product Approved 5q13.3 05q13.3 "Gm625|S100-zeta" S100 calcium binding protein, zeta "S100 calcium binding proteins|EF-hand domain containing" "459|863" 2004-09-22 2006-09-11 2014-11-19 170591 ENSG00000171643 OTTHUMG00000162441 uc003keq.5 AF437876 NM_130772 CCDS43333 Q8WXG8 11747429 MGI:2685471 RGD:1562902 S100Z 610103 +HGNC:10513 SAA1 serum amyloid A1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "PIG4|TP53I4" SAA Endogenous ligands 542 1988-01-18 2015-09-09 6288 ENSG00000173432 OTTHUMG00000166147 uc057zpu.1 M10906 NM_199161 CCDS7835 P0DJI8 "2595451|9305847" "MGI:98221|MGI:98222" SAA1 104750 330340 +HGNC:10514 SAA2 serum amyloid A2 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 1992-06-12 2016-10-05 6289 ENSG00000134339 OTTHUMG00000166484 uc001mnz.5 M26152 NM_030754 "CCDS7833|CCDS44548" P0DJI9 7686132 "MGI:98221|MGI:98222" SAA2 104751 +HGNC:39550 SAA2-SAA4 SAA2-SAA4 readthrough other readthrough Approved 11p15.1 11p15.1 2011-02-21 2014-11-19 100528017 ENSG00000255071 OTTHUMG00000166482 uc021qel.2 NM_001199744.1 CCDS76391 MGI:98224 RGD:1307371 +HGNC:10515 SAA3P serum amyloid A3 pseudogene pseudogene pseudogene Approved 11p15.1 11p15.1 SAA3 1992-06-12 2014-06-05 6290 ENSG00000166787 OTTHUMG00000166433 S73444 NR_026576 "8325654|2558975" MGI:98223 SAA3P PGOHUM00000257805 +HGNC:10516 SAA4 serum amyloid A4, constitutive protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "C-SAA|CSAA" 1992-06-12 2016-10-05 6291 ENSG00000148965 OTTHUMG00000166483 uc001mny.4 M81349 NM_006512 CCDS7832 P35542 8325654 MGI:98224 SAA4 104752 +HGNC:10517 SAA5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10512 SAA@ serum amyloid A1 cluster other region Approved 11p 11p SAA 1992-10-22 2006-04-27 6287 1550545 +HGNC:25158 SAAL1 serum amyloid A like 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 FLJ41463 2005-10-28 2015-11-20 2015-11-20 113174 ENSG00000166788 OTTHUMG00000166428 uc001mnq.4 AK123457 NM_138421 CCDS31439 Q96ER3 MGI:1926185 RGD:1587443 SAAL1 +HGNC:30179 SAC3D1 SAC3 domain containing 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "HSU79266|SHD1" 2005-03-02 2014-11-19 29901 ENSG00000168061 OTTHUMG00000165594 uc001ocm.4 U79266 NM_013299 CCDS41668 A6NKF1 "8619474|9110174" MGI:1913656 RGD:1308049 SAC3D1 +HGNC:17059 SACM1L SAC1 suppressor of actin mutations 1-like (yeast) protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "SAC1|KIAA0851" Phosphoinositide phosphatases 1079 2002-01-10 2016-10-05 22908 ENSG00000211456 OTTHUMG00000156653 uc003cos.3 AB020658 NM_014016 "CCDS33745|CCDS82762" Q9NTJ5 "10048485|11352561" MGI:1933169 RGD:69223 SACM1L 606569 +HGNC:10519 SACS sacsin molecular chaperone protein-coding gene gene with protein product Approved 13q12.12 13q12.12 "ARSACS|KIAA0730|DKFZp686B15167|DNAJC29|SPAX6|PPP1R138" protein phosphatase 1, regulatory subunit 138 spastic ataxia of Charlevoix-Saguenay (sacsin) "DNAJ (HSP40) heat shock proteins|Protein phosphatase 1 regulatory subunits" "584|694" 1999-11-19 2014-01-30 2016-10-05 26278 ENSG00000151835 OTTHUMG00000016562 uc001uon.3 AF193556 NM_014363 CCDS9300 Q9NZJ4 "10610707|15057823|21726565" MGI:1354724 RGD:1307281 SACS 604490 118445 +HGNC:39835 SACS-AS1 SACS antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 SACS antisense RNA 1 (non-protein coding) 2011-03-30 2012-08-15 2014-11-19 100506680 ENSG00000229558 OTTHUMG00000016565 uc001uor.2 NR_103450 +HGNC:30660 SAE1 SUMO1 activating enzyme subunit 1 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "AOS1|FLJ3091|Sua1" activator Of sumo 1 Ubiquitin like modifier activating enzymes 100 2006-10-31 2014-11-18 10055 ENSG00000142230 OTTHUMG00000183464 uc002pgc.4 BC018271 NM_005500 "CCDS12696|CCDS54284|CCDS54285" Q9UBE0 "10187858|9920803|10217437" MGI:1929264 RGD:1306098 SAE1 613294 +HGNC:10520 SAFB scaffold attachment factor B protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "HET|SAFB1" Hsp27 ERE-TATA binding protein RNA binding motif containing 725 1998-01-27 2016-01-15 6294 ENSG00000160633 OTTHUMG00000180502 uc002mcf.4 L43631 NM_001320571 "CCDS12142|CCDS56077|CCDS59339|CCDS59340" Q15424 "9605873|8600450" MGI:2146974 RGD:620613 SAFB 602895 +HGNC:21605 SAFB2 scaffold attachment factor B2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 KIAA0138 RNA binding motif containing 725 2003-06-27 2015-09-02 9667 ENSG00000130254 OTTHUMG00000180374 uc002mcd.4 D50928 NM_014649 CCDS32879 Q14151 12660241 MGI:2146808 RGD:1588577 SAFB2 608066 +HGNC:10521 SAG S-antigen visual arrestin protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "ARRESTIN|RP47" "arrestin 1|rod arrestin" S-antigen; retina and pineal gland (arrestin) Classical arrestins 1312 1989-09-19 2016-07-08 2016-07-08 6295 ENSG00000130561 OTTHUMG00000153213 uc002vuh.3 NM_000541 CCDS46545 P10523 2249983 MGI:98227 RGD:3619 Mutations of the Arrestin Gene|http://www.retina-international.org/files/sci-news/sagmut.htm SAG 181031 118449 +HGNC:30369 SAGE1 sarcoma antigen 1 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "SAGE|CT14" cancer/testis antigen 14 2004-05-24 2016-10-05 55511 ENSG00000181433 OTTHUMG00000022496 uc065bgl.1 AJ278111 NM_018666 CCDS14652 Q9NXZ1 10919659 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SAGE1 SAGE1 300359 +HGNC:51337 SAGE2P sarcoma antigen 2, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2014-10-10 2014-10-10 644717 ENSG00000198022 OTTHUMG00000022487 A6NJ88 PGOHUM00000304870 +HGNC:51338 SAGE3P sarcoma antigen 3, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2014-10-10 2014-10-10 100419054 ENSG00000277486 OTTHUMG00000188050 NG_026767 PGOHUM00000304869 +HGNC:51339 SAGE4P sarcoma antigen 4, pseudogene pseudogene pseudogene Approved Xq26.3 Xq26.3 2014-10-10 2014-10-10 442465 ENSG00000224539 OTTHUMG00000022486 PGOHUM00000305342 +HGNC:10523 SAI1 suppression of anchorage independence 1 phenotype phenotype only Approved 1p 01p 1992-02-14 2006-04-04 6298 "3155863|2777918" 154280 +HGNC:10524 SALL1 spalt like transcription factor 1 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "Hsal1|ZNF794" TBS "sal (Drosophila)-like 1|sal-like 1 (Drosophila)" Zinc fingers C2H2-type 28 1996-10-11 2016-05-23 2016-10-12 6299 ENSG00000103449 OTTHUMG00000133176 uc059ucs.1 X98833 NM_002968 "CCDS10747|CCDS45483" Q9NSC2 9425907 MGI:1889585 RGD:1309916 LRG_674|http://www.lrg-sequence.org/LRG/LRG_674 SALL1 602218 118451 121 +HGNC:10525 SALL1P1 spalt like transcription factor 1 pseudogene 1 pseudogene pseudogene Approved Xp11.23 Xp11.23 SALL1P "sal (Drosophila)-like 1 pseudogene|sal-like 1 (Drosophila) pseudogene|sal-like 1 (Drosophila) pseudogene 1" 1999-07-19 2010-03-05 2016-05-23 2016-05-23 139163 ENSG00000227391 OTTHUMG00000024152 AJ010104 NG_009881 10343095 +HGNC:10526 SALL2 spalt like transcription factor 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "KIAA0360|Hsal2|ZNF795" "sal (Drosophila)-like 2|sal-like 2 (Drosophila)" Zinc fingers C2H2-type 28 1996-10-11 2016-05-23 2016-10-05 6297 ENSG00000165821 OTTHUMG00000168826 uc032atc.2 AB002358 NM_005407 "CCDS32045|CCDS76656" Q9Y467 8975705 MGI:1354373 RGD:1309272 SALL2 602219 402736 543 +HGNC:10527 SALL3 spalt like transcription factor 3 protein-coding gene gene with protein product Approved 18q23 18q23 ZNF796 "sal (Drosophila)-like 3|sal-like 3 (Drosophila)" Zinc fingers C2H2-type 28 2000-01-20 2016-05-23 2016-05-23 27164 ENSG00000256463 OTTHUMG00000132896 uc002lmt.4 AJ007421 NM_171999 CCDS12013 Q9BXA9 10610715 MGI:109295 RGD:1310232 SALL3 605079 160 +HGNC:15924 SALL4 spalt like transcription factor 4 protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "dJ1112F19.1|ZNF797" "sal (Drosophila)-like 4|sal-like 4 (Drosophila)" Zinc fingers C2H2-type 28 2001-06-21 2016-05-23 2016-10-12 57167 ENSG00000101115 OTTHUMG00000032752 uc002xwh.6 AK001666 XM_005260467 "CCDS13438|CCDS82629" Q9UJQ4 MGI:2139360 RGD:1597672 LRG_675|http://www.lrg-sequence.org/LRG/LRG_675 SALL4 607343 118456 +HGNC:39818 SALL4P1 spalt like transcription factor 4 pseudogene 1 pseudogene pseudogene Approved 5q11.2 05q11.2 sal-like 4 (Drosophila) pseudogene 1 2011-03-30 2016-05-23 2016-05-23 100419717 ENSG00000250308 OTTHUMG00000162322 NG_024673 PGOHUM00000235597 +HGNC:39819 SALL4P2 spalt like transcription factor 4 pseudogene 2 pseudogene pseudogene Approved Xq26.1 Xq26.1 sal-like 4 (Drosophila) pseudogene 2 2011-03-30 2016-05-23 2016-05-23 100130259 ENSG00000238040 OTTHUMG00000022376 NG_022702 PGOHUM00000242007 +HGNC:39820 SALL4P3 spalt like transcription factor 4 pseudogene 3 pseudogene pseudogene Approved 16p12.3 16p12.3 sal-like 4 (Drosophila) pseudogene 3 2011-03-30 2016-05-23 2016-05-23 100131046 NG_022510 PGOHUM00000249005 +HGNC:39821 SALL4P4 spalt like transcription factor 4 pseudogene 4 pseudogene pseudogene Approved 13q34 13q34 sal-like 4 (Drosophila) pseudogene 4 2011-03-30 2016-05-23 2016-05-24 100419855 NG_024884 PGOHUM00000248494 +HGNC:39822 SALL4P5 spalt like transcription factor 4 pseudogene 5 pseudogene pseudogene Approved 3p24.3 03p24.3 sal-like 4 (Drosophila) pseudogene 5 2011-03-30 2016-05-24 2016-05-24 100130785 ENSG00000231915 OTTHUMG00000155607 NG_022241 PGOHUM00000237959 +HGNC:39823 SALL4P6 spalt like transcription factor 4 pseudogene 6 pseudogene pseudogene Approved 3p22.1 03p22.1 sal-like 4 (Drosophila) pseudogene 6 2011-03-30 2016-05-24 2016-05-24 391530 ENSG00000231280 OTTHUMG00000156186 NG_022248 PGOHUM00000238008 +HGNC:43900 SALL4P7 spalt like transcription factor 4 pseudogene 7 pseudogene pseudogene Approved 14q23.1 14q23.1 sal-like 4 (Drosophila) pseudogene 7 2012-04-27 2016-05-24 2016-05-24 390483 ENSG00000258692 OTTHUMG00000171186 NG_022841 PGOHUM00000247817 +HGNC:49001 SALRNA1 senescence associated long non-coding RNA 1 non-coding RNA RNA, long non-coding Approved 14q23.1 14q23.1 "SAL-RNA1|XLOC_023166" 2013-07-27 2013-07-30 104548971 ENSG00000258952 OTTHUMG00000171189 NR_126480 23758631 +HGNC:49003 SALRNA2 senescence associated long non-coding RNA 2 non-coding RNA RNA, long non-coding Approved 15q23 15q23 "SAL-RNA2|XLOC_025931" 2013-07-27 2013-07-30 104548973 ENSG00000280515 OTTHUMG00000189722 NR_126482 23758631 +HGNC:49002 SALRNA3 senescence associated long non-coding RNA 3 non-coding RNA RNA, long non-coding Approved 15q23 15q23 "SAL-RNA3|XLOC_025918" 2013-07-27 2013-07-30 104548972 ENSG00000281264 OTTHUMG00000189721 NR_126481 23758631 +HGNC:17958 SAMD1 sterile alpha motif domain containing 1 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 Sterile alpha motif domain containing 760 2002-01-10 2016-10-05 90378 ENSG00000141858 OTTHUMG00000166628 uc060ulq.1 BC007384 NM_138352 Q6SPF0 MGI:2142433 RGD:7529921 SAMD1 +HGNC:21574 SAMD3 sterile alpha motif domain containing 3 protein-coding gene gene with protein product Approved 6q23.1 06q23.1 "bA73O6.2|FLJ34032" Sterile alpha motif domain containing 760 2003-11-26 2015-08-25 154075 ENSG00000164483 OTTHUMG00000015556 uc003qbx.5 AK091351 NM_152552 "CCDS34539|CCDS64525" Q8N6K7 MGI:2685469 RGD:1587834 SAMD3 +HGNC:23023 SAMD4A sterile alpha motif domain containing 4A protein-coding gene gene with protein product Approved 14q22.2 14q22.2 "KIAA1053|DKFZP434H0350|Smaug|SMG|SMGA|hSmaug1" smaug homolog (Drosophila) SAMD4 sterile alpha motif domain containing 4 Sterile alpha motif domain containing 760 2003-09-01 2006-01-27 2006-01-27 2016-04-25 23034 ENSG00000020577 OTTHUMG00000170999 uc001xbb.4 AB028976 NM_015589 "CCDS32084|CCDS55917|CCDS55918" Q9UPU9 16221671 MGI:1921730 RGD:1310361 SAMD4A 610747 +HGNC:25492 SAMD4B sterile alpha motif domain containing 4B protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ10211|MGC99832|SMGB|hSmaug2" smaug homolog B (Drosophila) Sterile alpha motif domain containing 760 2006-01-27 2014-11-19 55095 ENSG00000179134 OTTHUMG00000182967 uc002olb.4 NM_018028 "CCDS33020|CCDS77295" Q5PRF9 16221671 MGI:2448542 RGD:1305597 SAMD4B +HGNC:21180 SAMD5 sterile alpha motif domain containing 5 protein-coding gene gene with protein product Approved 6q24.3 06q24.3 dJ875H10.1 Sterile alpha motif domain containing 760 2003-11-27 2014-11-19 389432 ENSG00000203727 OTTHUMG00000015767 uc003qmc.3 AL354880 NM_001030060 CCDS34548 Q5TGI4 MGI:2444815 RGD:1311012 SAMD5 +HGNC:25394 SAMD7 sterile alpha motif domain containing 7 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 DKFZp686E1583 Sterile alpha motif domain containing 760 2003-12-19 2016-10-05 344658 ENSG00000187033 OTTHUMG00000158730 uc003fgd.4 BX537903 NM_182610 CCDS3209 Q7Z3H4 MGI:1923203 RGD:1308931 SAMD7 +HGNC:26320 SAMD8 sterile alpha motif domain containing 8 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "FLJ25082|SMSr" "sphingomyelin synthase related|ceramide phosphoethanolamine synthase" Sterile alpha motif domain containing 760 2003-12-19 2016-10-05 142891 ENSG00000156671 OTTHUMG00000018515 uc001jwx.2 AK057811 NM_144660 "CCDS7347|CCDS53543" Q96LT4 24259670 MGI:1914880 RGD:1306447 SAMD8 611575 objectId:2525 2.7.8.n3 +HGNC:1348 SAMD9 sterile alpha motif domain containing 9 protein-coding gene gene with protein product Approved 7q21.2 07q21.2 "KIAA2004|FLJ20073" C7orf5 chromosome 7 open reading frame 5 Sterile alpha motif domain containing 760 2001-06-22 2004-07-16 2004-07-15 2016-06-28 54809 ENSG00000205413 OTTHUMG00000155809 uc003umg.3 AB095925 NM_017654 CCDS34680 Q5K651 27182967 RGD:1563091 SAMD9 610456 118460 +HGNC:1349 SAMD9L sterile alpha motif domain containing 9 like protein-coding gene gene with protein product Approved 7q21.2 07q21.2 "KIAA2005|FLJ39885" C7orf6 "chromosome 7 open reading frame 6|sterile alpha motif domain containing 9-like" Sterile alpha motif domain containing 760 1999-03-10 2005-04-26 2016-03-15 2016-03-15 219285 ENSG00000177409 OTTHUMG00000155807 uc003umh.2 AB095926 NM_152703 CCDS34681 Q8IVG5 MGI:1343184 SAMD9L 611170 461215 +HGNC:16129 SAMD10 sterile alpha motif domain containing 10 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 C20orf136 chromosome 20 open reading frame 136 Sterile alpha motif domain containing 760 2001-07-17 2004-07-16 2004-07-15 2014-11-19 140700 ENSG00000130590 OTTHUMG00000033011 uc002yhm.2 NM_080621 CCDS13549 Q9BYL1 MGI:2443872 RGD:1563203 SAMD10 +HGNC:28706 SAMD11 sterile alpha motif domain containing 11 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 MGC45873 Sterile alpha motif domain containing 760 2004-07-15 2014-11-19 148398 ENSG00000187634 OTTHUMG00000040719 uc001abw.2 BC024295 NM_152486 CCDS2 Q96NU1 12477932 MGI:2446220 RGD:1310271 SAMD11 616765 +HGNC:44473 SAMD11P1 sterile alpha motif domain containing 11 pseudogene 1 pseudogene pseudogene Approved 17p13.3 17p13.3 2012-11-02 2012-11-02 100421331 ENSG00000262480 OTTHUMG00000177803 NG_026140 PGOHUM00000236902 +HGNC:31750 SAMD12 sterile alpha motif domain containing 12 protein-coding gene gene with protein product Approved 8q24.11-q24.12 08q24.11-q24.12 FLJ39458 Sterile alpha motif domain containing 760 2004-07-15 2016-10-11 401474 ENSG00000177570 OTTHUMG00000059817 uc010mda.2 AK096777 NM_207506 "CCDS6325|CCDS47913" Q8N8I0 MGI:2444518 RGD:1561402 SAMD12 +HGNC:30937 SAMD12-AS1 SAMD12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.12 08q24.12 "C8orf26|NCRNA00252" "chromosome 8 open reading frame 26|non-protein coding RNA 252|SAMD12 antisense RNA 1 (non-protein coding)" 2005-04-27 2011-08-11 2012-08-15 2012-10-12 552860 ENSG00000281641 OTTHUMG00000189550 uc022bae.2 BE069098 NR_038210 +HGNC:24582 SAMD13 sterile alpha motif domain containing 13 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 Sterile alpha motif domain containing 760 2005-08-01 2015-09-02 148418 ENSG00000203943 OTTHUMG00000009859 uc001djr.3 NM_001010971 "CCDS30760|CCDS44166" Q5VXD3 MGI:2686498 RGD:708544 SAMD13 +HGNC:27312 SAMD14 sterile alpha motif domain containing 14 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 FLJ36890 Sterile alpha motif domain containing 760 2005-12-13 2014-11-19 201191 ENSG00000167100 OTTHUMG00000161992 uc002iqf.5 NM_174920 "CCDS11560|CCDS58562" Q8IZD0 8619474 MGI:2384945 RGD:1306138 SAMD14 +HGNC:18631 SAMD15 sterile alpha motif domain containing 15 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FLJ35963 "FAM15A|C14orf174" "family with sequence similarity 15, member A|chromosome 14 open reading frame 174" Sterile alpha motif domain containing 760 2003-01-10 2010-10-20 2010-10-20 2015-09-02 161394 ENSG00000100583 OTTHUMG00000167428 uc001xtq.2 AK093282 NM_001010860 CCDS32126 Q9P1V8 MGI:2685109 RGD:1589368 SAMD15 +HGNC:15925 SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "SBBI88|Mg11|HDDC1|MOP-5|AGS5" "HD domain containing 1|monocyte protein 5|Aicardi-Goutieres syndrome 5" SAM domain and HD domain 1 Sterile alpha motif domain containing 760 2001-07-31 2016-05-03 2016-10-12 25939 ENSG00000101347 OTTHUMG00000032402 uc002xgh.3 AF228421 NM_015474 CCDS13288 Q9Y3Z3 "11064105|11230166|22056990" MGI:1927468 RGD:1308369 LRG_281|http://www.lrg-sequence.org/LRG/LRG_281 SAMHD1 606754 201570 3.1.5.- +HGNC:24276 SAMM50 SAMM50 sorting and assembly machinery component protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "CGI-51|TRG-3|YNL026W|OMP85|TOB55|SAM50" sorting and assembly machinery component 50 homolog (S. cerevisiae) 2005-05-31 2005-11-20 2013-08-21 2016-07-04 25813 ENSG00000100347 OTTHUMG00000150557 uc003bej.4 AK001087 NM_015380 CCDS14055 Q9Y512 15644312 MGI:1915903 RGD:1303219 SAMM50 612058 +HGNC:49778 SAMM50P1 SAMM50 sorting and assembly machinery component pseudogene 1 pseudogene pseudogene Approved 9p22.2 09p22.2 2014-02-14 2014-02-14 100271893 ENSG00000224488 OTTHUMG00000019598 NG_011613 PGOHUM00000235976 +HGNC:49644 SAMMSON survival associated mitochondrial melanoma specific oncogenic non-coding RNA non-coding RNA RNA, long non-coding Approved 3p13 03p13 LINC01212 long intergenic non-protein coding RNA 1212 Long non-coding RNAs 788 2014-01-28 2016-03-29 2016-04-08 2016-04-08 101927152 ENSG00000240405 OTTHUMG00000159017 NR_110000 27008969 616895 +HGNC:10528 SAMSN1 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding gene gene with protein product Approved 21q11.2 21q11.2 "NASH1|SASH2|SH3D6B|HACS1|SLy2" "nuclear localization signals, SAM and SH3 domain containing 1|SAM and SH3 domain containing 2|hematopoietic adapter-containing SH3 and sterile α-motif (SAM) domains 1|Src homology domain 3 (SH3)-containing adapter protein SH3 lymphocyte protein 2" "SAM and SH3 domain containing|Sterile alpha motif domain containing" "731|760" 2000-02-22 2006-12-13 2016-10-05 64092 ENSG00000155307 OTTHUMG00000074317 uc002yju.3 AF222927 XM_011529684 "CCDS42906|CCDS58786|CCDS74774" Q9NSI8 "11536050|11594764" MGI:1914992 RGD:620926 SAMSN1 607978 +HGNC:39599 SAMSN1-AS1 SAMSN1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q11.2 21q11.2 SAMSN1 antisense RNA 1 (non-protein coding) 2011-03-17 2012-08-15 2012-10-12 100874190 ENSG00000223662 OTTHUMG00000074321 uc031ruw.1 NR_046512 +HGNC:10531 SAP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10530 SAP18 Sin3A associated protein 18 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "SAP18p|2HOR0202|MGC27131" sin3A-associated protein, 18kDa ASAP complex 1236 1998-09-21 2016-06-01 2016-06-01 10284 ENSG00000150459 OTTHUMG00000016535 uc058vuw.1 U96915 NM_005870 CCDS9295 O00422 9150135 MGI:1277978 RGD:1310388 SAP18 602949 +HGNC:51567 SAP18P1 SAP18 pseudogene 1 pseudogene pseudogene Approved 5q13.3 05q13.3 2015-03-10 2015-03-10 106480689 ENSG00000249777 OTTHUMG00000162385 NG_043321 PGOHUM00000301017 +HGNC:51568 SAP18P2 SAP18 pseudogene 2 pseudogene pseudogene Approved 2q31.3 02q31.3 2015-03-10 2015-03-10 442060 ENSG00000223873 OTTHUMG00000154313 NG_005501 PGOHUM00000298807 +HGNC:51569 SAP18P3 SAP18 pseudogene 3 pseudogene pseudogene Approved 3p24.3 03p24.3 2015-03-10 2015-03-10 106660616 ENSG00000230697 OTTHUMG00000155392 NG_044939 PGOHUM00000298967 +HGNC:41908 SAP25 Sin3A associated protein 25 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FLJ00248 Sin3A-associated protein, 25kDa 2011-05-19 2016-06-01 2016-06-01 100316904 ENSG00000205307 OTTHUMG00000187472 uc022aip.2 XM_005250096 CCDS55137 Q8TEE9 16449650 MGI:3802945 RGD:1562406 SAP25 +HGNC:10532 SAP30 Sin3A associated protein 30 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 sin3A-associated protein, 30kDa 1999-06-07 2016-06-01 2016-06-01 8819 ENSG00000164105 OTTHUMG00000160798 uc003itd.4 AF055993 NM_003864 CCDS3817 O75446 9651585 MGI:1929129 RGD:1595501 SAP30 603378 +HGNC:30785 SAP30BP SAP30 binding protein protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "HCNGP|HTRG|HTRP" 2006-01-05 2014-11-19 29115 ENSG00000161526 OTTHUMG00000179798 uc002jpe.4 AY082382 NM_013260 "CCDS11726|CCDS77115" Q9UHR5 15496587 MGI:1927479 RGD:1565537 SAP30BP 610218 +HGNC:25663 SAP30L SAP30 like protein-coding gene gene with protein product Approved 5q33.2 05q33.2 "FLJ11526|NS4ATP2" 2006-03-24 2016-07-12 2016-07-12 79685 ENSG00000164576 OTTHUMG00000130146 uc003lvk.4 AY341060 NM_024632 "CCDS4326|CCDS47321|CCDS47322" Q9HAJ7 "14680513|16820529" MGI:1354709 RGD:1309585 SAP30L 610398 +HGNC:26760 SAP30L-AS1 SAP30L antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 5q33.2 05q33.2 "FLJ38109|GALNT10-AS1" GALNT10 antisense RNA 1 2013-06-04 2013-06-04 2014-02-12 386627 ENSG00000245275 OTTHUMG00000163570 NR_037897 12477932 +HGNC:29813 SAP130 Sin3A associated protein 130 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 FLJ12761 sin3A-associated protein, 130kDa 2006-02-02 2016-06-01 2016-06-01 79595 ENSG00000136715 OTTHUMG00000131571 uc002tpp.3 BC017453 NM_024545 "CCDS2153|CCDS54397|CCDS82510" Q9H0E3 "11230166|12724404" MGI:1919782 RGD:1311657 SAP130 609697 +HGNC:13938 SAPCD1 suppressor APC domain containing 1 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 NG23 C6orf26 chromosome 6 open reading frame 26 2002-04-05 2011-12-13 2011-12-13 2016-10-05 401251 ENSG00000228727 OTTHUMG00000031131 uc063vnx.1 NM_001039651 CCDS34411 Q5SSQ6 MGI:2388100 RGD:1359359 +HGNC:39824 SAPCD1-AS1 SAPCD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p21.33 06p21.33 C6orf26-AS1 "C6orf26 antisense RNA 1 (non-protein coding)|SAPCD1 antisense RNA 1 (non-protein coding)" 2011-04-21 2011-12-13 2012-08-15 2012-10-12 104413891 ENSG00000235663 OTTHUMG00000137389 uc063vob.1 NR_126423 +HGNC:28055 SAPCD2 suppressor APC domain containing 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 p42.3 C9orf140 chromosome 9 open reading frame 140 2004-04-16 2012-02-08 2012-02-08 2014-11-19 89958 ENSG00000186193 OTTHUMG00000020961 uc011men.3 BC024299 NM_178448 CCDS7027 Q86UD0 12477932 MGI:1919330 RGD:1590629 612057 +HGNC:51277 SAPCD2P1 suppressor APC domain containing 2 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 2014-08-27 2014-08-27 442320 ENSG00000213644 OTTHUMG00000156472 NG_022563 PGOHUM00000302731 +HGNC:51278 SAPCD2P2 suppressor APC domain containing 2 pseudogene 2 pseudogene pseudogene Approved 7p11.2 07p11.2 2014-08-27 2014-08-27 442317 ENSG00000235368 OTTHUMG00000156686 NG_022559 PGOHUM00000302681 +HGNC:51279 SAPCD2P3 suppressor APC domain containing 2 pseudogene 3 pseudogene pseudogene Approved 7q11.21 07q11.21 2014-08-27 2014-08-27 643353 ENSG00000232491 OTTHUMG00000156755 NG_009402 PGOHUM00000302776 +HGNC:51280 SAPCD2P4 suppressor APC domain containing 2 pseudogene 4 pseudogene pseudogene Approved 7q11.21 07q11.21 2014-08-27 2014-08-27 442318 ENSG00000234312 OTTHUMG00000156271 NG_022538 +HGNC:10534 SAR1A secretion associated Ras related GTPase 1A protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "SAR1|Sara" SARA1 "SAR1a gene homolog (S. cerevisiae) 1|SAR1a gene homolog 1 (S. cerevisiae)|SAR1 homolog A (S. cerevisiae)|secretion associated, Ras related GTPase 1A" ARF GTPase family 357 2000-06-28 2005-10-21 2016-01-28 2016-01-28 56681 ENSG00000079332 OTTHUMG00000018400 uc010qjh.3 NM_020150 CCDS7298 Q9NR31 10871277 MGI:98230 SAR1A 607691 +HGNC:13983 SAR1AP1 secretion associated Ras related GTPase 1A pseudogene 1 pseudogene pseudogene Approved 6p21 06p21 "hsSARA-p|SARAP1|dJ88J8.3" "SARAP|SAR1P1" "SAR1a gene homolog (S. cerevisiae) pseudogene|SAR1 homolog (S. cerevisiae) pseudogene 1|SAR1 homolog A (S. cerevisiae) pseudogene 1" 2003-11-27 2009-12-02 2016-01-28 2016-01-28 646260 AL035402 NG_009576 +HGNC:20770 SAR1AP2 secretion associated Ras related GTPase 1A pseudogene 2 pseudogene pseudogene Approved 10q26.2 10q26.2 "Em:AC026226.2|SARA1P" SAR1P2 "SAR1 homolog (S. cerevisiae) pseudogene 2|SAR1 homolog A (S. cerevisiae) pseudogene 2" 2005-10-21 2009-12-02 2016-01-28 2016-08-17 641312 ENSG00000213170 OTTHUMG00000019242 AC026226 NG_009478 PGOHUM00000290314 +HGNC:32317 SAR1AP3 secretion associated Ras related GTPase 1A pseudogene 3 pseudogene pseudogene Approved 4q27 04q27 SAR1P3 "SAR1 homolog (S. cerevisiae) pseudogene 3|SAR1 homolog A (S. cerevisiae) pseudogene 3" 2005-11-08 2009-12-02 2016-01-28 2016-01-28 344988 XM_293671 +HGNC:37638 SAR1AP4 secretion associated Ras related GTPase 1A pseudogene 4 pseudogene pseudogene Approved Xq13.3 Xq13.3 SAR1 homolog A (S. cerevisiae) pseudogene 4 2009-12-02 2016-01-28 2016-01-28 100132322 ENSG00000233063 OTTHUMG00000021873 NG_016180 +HGNC:10535 SAR1B secretion associated Ras related GTPase 1B protein-coding gene gene with protein product Approved 5q31.1 05q31.1 SARA2 "SAR1a gene homolog (S. cerevisiae) 2|SAR1a gene homolog 2 (S. cerevisiae)|SAR1 homolog B (S. cerevisiae)|secretion associated, Ras related GTPase 1B" ARF GTPase family 357 2000-06-28 2005-10-21 2016-01-28 2016-01-28 51128 ENSG00000152700 OTTHUMG00000129114 uc003kzr.4 AF092130 NM_016103 CCDS4177 Q9Y6B6 MGI:1913647 RGD:1305590 SAR1B 607690 118465 +HGNC:28789 SARAF store-operated calcium entry associated regulatory factor protein-coding gene gene with protein product Approved 8p12 08p12 MGC8721 SOCE-associated regulatory factor TMEM66 transmembrane protein 66 2005-07-29 2014-06-25 2016-05-04 2016-05-04 51669 ENSG00000133872 OTTHUMG00000133397 AY359104 NM_016127 "CCDS6074|CCDS64866" Q96BY9 "11042152|22464749|23816623" MGI:1915137 RGD:1303011 614768 +HGNC:10536 SARDH sarcosine dehydrogenase protein-coding gene gene with protein product Approved 9q34.2 09q34.2 SDH DMGDHL1 1998-03-02 2016-10-05 1757 ENSG00000123453 OTTHUMG00000020879 uc004ceo.4 XR_001746213 CCDS6978 Q9UL12 10444331 MGI:2183102 RGD:621125 SARDH 604455 118468 1.5.8.3 +HGNC:17074 SARM1 sterile alpha and TIR motif containing 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "SARM|SAMD2|KIAA0524" "Sterile alpha motif domain containing|TIR domain containing" "760|1296" 2003-05-14 2016-10-05 23098 ENSG00000004139 OTTHUMG00000132499 uc032ezg.2 AB011096 NM_015077 CCDS11230 Q6SZW1 9628581 MGI:2136419 RGD:1310078 SARM1 607732 +HGNC:24432 SARNP SAP domain containing ribonucleoprotein protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "THO1|Hcc-1|CIP29" "hepatocellular carcinoma 1|cytokine induced protein 29 kDa" 2009-04-22 2009-07-09 84324 ENSG00000205323 OTTHUMG00000170441 uc001sht.4 AJ409089 NM_033082 CCDS8892 P82979 "11356193|11922608" MGI:1913368 RGD:1305692 SARNP 610049 +HGNC:10537 SARS seryl-tRNA synthetase protein-coding gene gene with protein product Approved 1p13.3 01p13.3 SERS serine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class II 132 1995-06-09 2014-11-18 6301 ENSG00000031698 OTTHUMG00000011726 uc001dwu.3 BC009390 NM_006513 "CCDS795|CCDS81356" P49591 9431993 MGI:102809 RGD:628813 SARS 607529 6.1.1.11 +HGNC:17697 SARS2 seryl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ20450|mtSerRS|SerRSmt|SARS|SERS|SYS" serine tRNA ligase 2, mitochondrial SARSM "serine-tRNA ligase, mitochondrial|seryl-tRNA synthetase 2" Aminoacyl tRNA synthetases, Class II 132 2002-10-09 2007-02-23 2014-11-19 54938 ENSG00000104835 OTTHUMG00000182691 uc002oka.3 AB029948 NM_017827 "CCDS33017|CCDS54265" Q9NP81 10764807 MGI:1919234 RGD:1309456 SARS2 612804 365159 6.1.1.11 +HGNC:10538 SART1 squamous cell carcinoma antigen recognized by T-cells 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "Ara1|Snu66|SNRNP110" small nuclear ribonucleoprotein 110kDa (U4/U6.U5) "squamous cell carcinoma antigen recognised by T cells|squamous cell carcinoma antigen recognized by T cells 1" 1999-01-29 2015-11-13 2015-11-13 9092 ENSG00000175467 OTTHUMG00000166771 uc001ogl.4 AB006198 XM_011545345 CCDS31611 O43290 9449708 MGI:1309453 RGD:61930 SART1 605941 +HGNC:16860 SART3 squamous cell carcinoma antigen recognized by T-cells 3 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "KIAA0156|RP11-13G14|TIP110|p110" HIV-1 Tat-interacting protein of 110kDa RNA binding motif containing 725 2001-12-17 2015-11-13 2016-06-16 9733 ENSG00000075856 OTTHUMG00000169449 uc001tmz.2 AB020880 XM_005269241 CCDS9117 Q15020 "12032085|15840095|20595234" MGI:1858230 RGD:1311646 SART3 611684 +HGNC:19182 SASH1 SAM and SH3 domain containing 1 protein-coding gene gene with protein product Approved 6q24.3-q25.1 06q24.3-q25.1 "KIAA0790|dJ323M4.1|SH3D6A" "SAM and SH3 domain containing|Sterile alpha motif domain containing" "731|760" 2003-11-27 2016-10-11 23328 ENSG00000111961 OTTHUMG00000015773 uc003qme.2 AB018333 NM_015278 CCDS5212 O94885 "9872452|12771949" MGI:1917347 RGD:1566017 SASH1 607955 448465 +HGNC:15975 SASH3 SAM and SH3 domain containing 3 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "SLY|753P9|SH3D6C|HACS2" CXorf9 chromosome X open reading frame 9 "SAM and SH3 domain containing|Sterile alpha motif domain containing" "731|760" 2001-07-18 2008-02-18 2008-02-18 2016-10-05 54440 ENSG00000122122 OTTHUMG00000022372 uc004euu.4 BC051881 NM_018990 CCDS14614 O75995 11470164 MGI:1921381 RGD:1560293 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SASH3 SASH3 300441 +HGNC:25403 SASS6 SAS-6 centriolar assembly protein protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "DKFZp761A078|SAS-6|FLJ22097|SAS6" spindle assembly 6 homolog (C. elegans) 2005-10-13 2015-06-19 2016-10-05 163786 ENSG00000156876 OTTHUMG00000010754 uc001dsu.4 AL834265 NM_194292 CCDS764 Q6UVJ0 "15665853|14654843" MGI:1920026 RGD:1306255 SASS6 609321 419331 +HGNC:10540 SAT1 spermidine/spermine N1-acetyltransferase 1 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 SSAT diamine N-acetyltransferase 1 SAT spermidine/spermine N1-acetyltransferase GCN5 related N-acetyltransferases 1134 1991-09-18 2006-08-24 2006-08-24 2016-10-05 6303 ENSG00000130066 OTTHUMG00000021256 uc004dau.5 M55580 NM_002970 CCDS14207 P21673 "1985966|1417826" MGI:98233 RGD:1586174 SAT1 313020 412573 2.3.1.57 +HGNC:23160 SAT2 spermidine/spermine N1-acetyltransferase family member 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 SSAT2 diamine N-acetyltransferase 2 spermidine/spermine N1-acetyltransferase 2 GCN5 related N-acetyltransferases 1134 2003-09-26 2008-01-07 2016-10-05 112483 ENSG00000141504 OTTHUMG00000108152 uc002gic.3 AF348524 NM_133491 "CCDS11116|CCDS82055" Q96F10 "15283699|17558023" MGI:1916465 RGD:1307869 SAT2 611463 2.3.1.57 +HGNC:10541 SATB1 SATB homeobox 1 protein-coding gene gene with protein product Approved 3p24.3 03p24.3 special AT-rich sequence binding protein 1 (binds to nuclear matrix/scaffold-associating DNA) CUT class homeoboxes and pseudogenes 527 1994-05-03 2007-02-15 2015-10-08 6304 ENSG00000182568 OTTHUMG00000129890 uc003cbj.4 NM_001131010 "CCDS2631|CCDS56242" Q01826 1505028 MGI:105084 RGD:1305561 SATB1 602075 8507 +HGNC:50687 SATB1-AS1 SATB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p24.3 03p24.3 2014-06-05 2014-06-05 101927777 ENSG00000228956 OTTHUMG00000155346 DR006704 NR_125803 +HGNC:33344 SATB1P1 entry withdrawn withdrawn withdrawn Entry Withdrawn CUT class homeoboxes and pseudogenes 527 2015-10-08 8627 +HGNC:21637 SATB2 SATB homeobox 2 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "KIAA1034|FLJ21474" SATB family member 2 CUT class homeoboxes and pseudogenes 527 2003-07-08 2007-02-15 2015-08-25 23314 ENSG00000119042 OTTHUMG00000132767 uc002uuz.3 AB028957 NM_015265 CCDS2327 Q9UPW6 MGI:2679336 RGD:1562369 SATB2 608148 8508 138514 +HGNC:26490 SATB2-AS1 SATB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q33.1 02q33.1 SATB2 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 150538 ENSG00000225953 OTTHUMG00000154470 uc061rbe.1 NR_026830 +HGNC:27992 SATL1 spermidine/spermine N1-acetyl transferase-like 1 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 GCN5 related N-acetyltransferases 1134 2004-06-08 2016-10-05 340562 ENSG00000184788 OTTHUMG00000021931 uc065adu.1 BC043215 XM_291339 CCDS35343 Q86VE3 12477932 MGI:1921059 RGD:1565932 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SATL1 SATL1 +HGNC:17795 SAV1 salvador family WW domain containing protein 1 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "WW45|WWP4|salvador" WW domain-containing adaptor 45 salvador homolog 1 (Drosophila) 2003-01-15 2014-04-14 2016-10-05 60485 ENSG00000151748 OTTHUMG00000140293 uc001wyh.3 AK023071 XM_011537057 CCDS9701 Q9H4B6 "12202036|11027580" MGI:1927144 RGD:1307253 SAV1 607203 +HGNC:16474 SAX1 spastic ataxia 1 (autosomal dominant) phenotype phenotype only Approved 12p13 12p13 SPAX1 2001-09-13 2006-10-18 2011-02-10 114610 +HGNC:28566 SAXO1 stabilizer of axonemal microtubules 1 protein-coding gene gene with protein product Approved 9p22.1 09p22.1 MGC35182 "C9orf138|FAM154A" "chromosome 9 open reading frame 138|family with sequence similarity 154, member A" 2004-04-16 2015-03-03 2015-03-03 2015-03-03 158297 ENSG00000155875 OTTHUMG00000019609 BC033489 NM_153707 "CCDS6487|CCDS75819|CCDS75820" Q8IYX7 25673876 MGI:1923061 RGD:1549779 616292 +HGNC:33727 SAXO2 stabilizer of axonemal microtubules 2 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 DKFZp666G057 FAM154B family with sequence similarity 154, member B 2008-02-21 2015-03-03 2015-03-03 2015-03-03 283726 ENSG00000188659 AL833762 NM_001008226 CCDS32310 Q658L1 25673876 MGI:1914618 RGD:1562653 +HGNC:21025 SAYSD1 SAYSVFN motif domain containing 1 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 FLJ11101 C6orf64 chromosome 6 open reading frame 64 2003-05-06 2011-12-13 2011-12-13 2016-10-05 55776 ENSG00000112167 OTTHUMG00000014641 uc003ook.2 BC022007 NM_018322 "CCDS4840|CCDS78135" Q9NPB0 MGI:1914759 RGD:1310877 +HGNC:19440 SBDS SBDS ribosome assembly guanine nucleotide exchange factor protein-coding gene gene with protein product Approved 7q11.21 07q11.21 "CGI-97|FLJ10917|SDS|SWDS" Shwachman-Bodian-Diamond syndrome 2003-07-02 2016-02-17 2016-10-12 51119 ENSG00000126524 OTTHUMG00000023165 uc003tvm.2 AF151855 NM_016038 CCDS5537 Q9Y3A5 12496757 MGI:1913961 RGD:1311043 "SBDSbase: Mutation registry for Shwachman-Diamond syndrome|http://structure.bmc.lu.se/idbase/SBDSbase/|LRG_104|http://www.lrg-sequence.org/LRG/LRG_104" SBDS 607444 118476 +HGNC:21646 SBDSP1 Shwachman-Bodian-Diamond syndrome pseudogene 1 pseudogene pseudogene Approved 7q11.23 07q11.23 SBDSP Shwachman-Bodian-Diamond syndrome pseudogene 2003-07-02 2010-03-05 2010-03-05 2014-11-19 155370 ENSG00000225648 OTTHUMG00000157063 BC010183 NR_001588 12496757 PGOHUM00000233413 +HGNC:10542 SBF1 SET binding factor 1 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "MTMR5|DENND7A" "myotubularin related 5|DENN/MADD domain containing 7A" "DENN/MADD domain containing|Pleckstrin homology domain containing|Myotubularins" "504|682|903" 1998-07-28 2016-04-25 6305 ENSG00000100241 OTTHUMG00000150204 uc003blh.5 U93181 XM_011530709 CCDS14091 O95248 "9537414|9736772" MGI:1925230 RGD:1307090 SBF1 603560 364562 +HGNC:31098 SBF1P1 SET binding factor 1 pseudogene 1 pseudogene pseudogene Approved 8q12.1 08q12.1 2005-10-06 2014-11-19 100133234 ENSG00000248522 NR_027765 +HGNC:2135 SBF2 SET binding factor 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "KIAA1766|MTMR13|DENND7B" myotubularin related 13 CMT4B2 "Charcot-Marie-Tooth neuropathy 4B2 (autosomal recessive, with myelin outfolding)|DENN/MADD domain containing 7B" "DENN/MADD domain containing|Pleckstrin homology domain containing|Myotubularins" "504|682|903" 1999-10-29 2004-11-12 2004-11-12 2016-10-12 81846 ENSG00000133812 OTTHUMG00000165890 uc001mib.2 AB051553 NM_030962 CCDS31427 Q86WG5 10644431 MGI:1921831 RGD:1588657 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_267|http://www.lrg-sequence.org/LRG/LRG_267" SBF2 607697 118482 +HGNC:27438 SBF2-AS1 SBF2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 SBF2 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 283104 ENSG00000246273 OTTHUMG00000165875 uc001mhz.2 NR_036485 +HGNC:17699 SBK1 SH3 domain binding kinase 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 Sbk SH3-binding domain kinase 1 2005-01-21 2013-09-27 2014-11-19 388228 ENSG00000188322 OTTHUMG00000166066 uc002dpd.3 XM_370948 CCDS32416 Q52WX2 MGI:2135937 RGD:628713 SBK1 objectId:2193 +HGNC:34416 SBK2 SH3 domain binding kinase family member 2 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 SGK069 "SH3-binding domain kinase family, member 2|SH3 domain binding kinase family, member 2" 2009-01-09 2015-11-18 2015-11-18 646643 ENSG00000187550 OTTHUMG00000155830 uc061dbl.1 NM_001101401 CCDS42631 P0C263 MGI:2685925 RGD:1563279 SBK2 objectId:2194 +HGNC:44121 SBK3 SH3 domain binding kinase family member 3 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 SgK110 SH3 domain binding kinase family, member 3 2013-09-27 2015-11-18 2015-11-18 100130827 ENSG00000231274 OTTHUMG00000155831 XM_011526298 CCDS74457 P0C264 MGI:2685924 RGD:1583965 +HGNC:22973 SBNO1 strawberry notch homolog 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "MOP3|FLJ10701|FLJ10833|Sno" sno, strawberry notch homolog 1 (Drosophila) 2003-08-11 2016-07-08 2016-07-08 55206 ENSG00000139697 OTTHUMG00000183988 uc010tao.3 AK001563 NM_018183 "CCDS9246|CCDS53844" A3KN83 MGI:2384298 RGD:1310005 SBNO1 614274 +HGNC:29158 SBNO2 strawberry notch homolog 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "FLJ00173|Stno|Sno" KIAA0963 "KIAA0963|strawberry notch homolog 2 (Drosophila)" 2004-02-10 2006-10-06 2016-07-08 2016-07-08 22904 ENSG00000064932 OTTHUMG00000181875 uc002lrk.5 AK074102 NM_014963 "CCDS45894|CCDS45895" Q9Y2G9 10231032 MGI:2448490 RGD:1307194 SBNO2 615729 +HGNC:24950 SBSN suprabasin protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "UNQ698|HLAR698" 2006-03-20 2014-11-19 374897 ENSG00000189001 OTTHUMG00000048102 uc002oae.2 AY358701 NM_198538 "CCDS12464|CCDS54253" Q6UWP8 12228223 MGI:2446326 RGD:1562305 SBSN 609969 +HGNC:30362 SBSPON somatomedin B and thrombospondin type 1 domain containing protein-coding gene gene with protein product Approved 8q21.11 08q21.11 RPESP "RPE spondin|rpe-spondin" C8orf84 chromosome 8 open reading frame 84 2009-01-09 2012-05-15 2015-11-09 2015-11-09 157869 ENSG00000164764 OTTHUMG00000157144 uc003xzf.4 NM_153225 CCDS43747 Q8IVN8 12107410 MGI:2684952 RGD:1559717 +HGNC:10546 SC4MOP sterol-C4-methyl oxidase pseudogene pseudogene pseudogene Approved Xp21.1 Xp21.1 DESP4P1 1997-11-10 2003-03-26 6308 U93261 NG_001194 +HGNC:10547 SC5D sterol-C5-desaturase protein-coding gene gene with protein product Approved 11q23.3-q24.1 11q23.3-q24.1 lathosterol oxidase SC5DL "sterol-C5-desaturase (fungal ERG3, delta-5-desaturase)-like|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, fungal)-like|sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like" Fatty acid hydroxylase domain containing 552 1996-08-12 2013-03-04 2013-03-04 2016-10-11 6309 ENSG00000109929 OTTHUMG00000166068 uc001pxu.4 NM_001024956 CCDS8435 O75845 8976377 MGI:1353611 RGD:620775 602286 118487 1.14.21.6 +HGNC:13440 SCA9 spinocerebellar ataxia 9 phenotype phenotype only Approved reserved reserved 2001-12-04 2011-02-10 140451 9159738 612876 +HGNC:15744 SCA18 spinocerebellar ataxia 18 (sensory with neurogenic muscular atrophy) phenotype phenotype only Approved 7q22-q32 07q22-q32 SMNA 2001-05-30 2011-02-10 94008 11992570 607458 +HGNC:17204 SCA20 spinocerebellar ataxia 20 phenotype phenotype only Approved 11q12 11q12 2004-05-04 2015-04-29 407973 "14998916|17159129|18801880" 212610 +HGNC:20684 SCA25 spinocerebellar ataxia 25 phenotype phenotype only Approved 2p21-p15 02p21-p15 2003-03-18 2011-02-10 338435 14705117 608703 212612 +HGNC:31097 SCA26 spinocerebellar ataxia 26 phenotype phenotype only Approved 19p13.3 19p13.3 2004-05-18 2014-01-30 408221 "15732118|23001565" +HGNC:33445 SCA30 spinocerebellar ataxia 30 phenotype phenotype only Approved 4q34.3-q35.1 04q34.3-q35.1 2008-12-16 2011-02-10 100359393 18996908 613371 212618 +HGNC:37475 SCA32 spinocerebellar ataxia 32 phenotype phenotype only Approved 7q32-q33 07q32-q33 2012-02-10 2012-02-10 100653368 613909 403187 +HGNC:43726 SCA37 spinocerebellar ataxia 37 phenotype phenotype only Approved 1p32 01p32 2012-02-10 2013-05-24 103753527 23700170 615945 365642 +HGNC:43718 SCAANT1 SCA7/ATXN7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 ATXN7-AS1 "ATXN7 antisense RNA 1 (non-protein coding)|spinocerebellar ataxia-7 antisense noncoding transcript 1" SCA7/ATXN7 antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2012-02-03 2012-08-15 2012-10-19 100861563 ENSG00000280620 OTTHUMG00000189735 uc062let.1 BU569004 21689595 614481 +HGNC:10562 SCAF# entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:30403 SCAF1 SR-related CTD associated factor 1 protein-coding gene gene with protein product Approved 19q13.3-q13.4 19q13.3-q13.4 "SR-A1|FLJ00034" 2007-08-09 2016-03-14 2016-03-14 58506 ENSG00000126461 OTTHUMG00000183238 uc002poq.4 AK024444 NM_021228 CCDS33074 Q9H7N4 11461075 MGI:2141980 RGD:708405 SCAF1 +HGNC:19304 SCAF4 SR-related CTD associated factor 4 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "KIAA1172|DKFZp434E098|SRA4" SFRS15 splicing factor, arginine/serine-rich 15 RNA binding motif containing 725 2003-12-15 2011-01-10 2016-03-14 2016-10-05 57466 ENSG00000156304 OTTHUMG00000084903 uc002ypd.3 AB032998 XM_047889 "CCDS33537|CCDS46644|CCDS54482" O95104 10574461 MGI:2146350 RGD:727896 SCAF4 616023 +HGNC:20959 SCAF8 SR-related CTD associated factor 8 protein-coding gene gene with protein product Approved 6q25.2 06q25.2 KIAA1116 RBM16 RNA binding motif protein 16 RNA binding motif containing 725 2003-04-24 2011-01-10 2016-03-14 2016-10-05 22828 ENSG00000213079 OTTHUMG00000015877 uc003qpz.5 AB029039 NM_014892 "CCDS5247|CCDS69226|CCDS75541" Q9UPN6 10470851 MGI:1925212 RGD:708362 SCAF8 616024 +HGNC:10784 SCAF11 SR-related CTD associated factor 11 protein-coding gene gene with protein product Approved 12q12 12q12 "SIP1|SRRP129|CASP11" "SFRS2IP|SRSF2IP" "splicing factor, arginine/serine-rich 2, interacting protein|serine/arginine-rich splicing factor 2, interacting protein" Ring finger proteins 58 2000-05-05 2011-01-10 2016-03-14 2016-10-05 9169 ENSG00000139218 OTTHUMG00000149930 uc001rox.4 Y11251 NM_004719 CCDS8748 Q99590 "9224939|9447963" MGI:1919443 RGD:1598325 SCAF11 603668 +HGNC:26709 SCAI suppressor of cancer cell invasion protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "FLJ36664|NET40" C9orf126 chromosome 9 open reading frame 126 2004-04-15 2009-07-09 2009-07-09 2016-10-05 286205 ENSG00000173611 OTTHUMG00000020667 uc004bpe.4 AK093983 NM_173690 "CCDS43877|CCDS48017" Q8N9R8 MGI:2443716 RGD:1594720 SCAI +HGNC:10563 SCAMP1 secretory carrier membrane protein 1 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 SCAMP37 Secretory carrier membrane proteins 735 1999-05-21 2014-11-19 9522 ENSG00000085365 OTTHUMG00000162479 uc032uzx.2 AF038966 NM_004866 "CCDS75264|CCDS78025" O15126 9378760 MGI:1349480 RGD:3625 606911 +HGNC:50544 SCAMP1-AS1 SCAMP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q14.1 05q14.1 2014-05-14 2014-05-20 728769 ENSG00000245556 OTTHUMG00000162481 NR_105014 +HGNC:10564 SCAMP2 secretory carrier membrane protein 2 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 Secretory carrier membrane proteins 735 1999-05-21 2016-10-05 10066 ENSG00000140497 OTTHUMG00000142817 uc002azb.2 AF005038 NM_005697 CCDS10271 O15127 9378760 MGI:1346518 RGD:68348 SCAMP2 606912 +HGNC:10565 SCAMP3 secretory carrier membrane protein 3 protein-coding gene gene with protein product Approved 1q22 01q22 Propin 1 C1orf3 Secretory carrier membrane proteins 735 1999-05-21 2016-10-05 10067 ENSG00000116521 OTTHUMG00000035874 uc001fjs.4 AF005039 NM_005698 "CCDS1105|CCDS1106" O14828 "9331372|9658162" MGI:1346346 RGD:68351 SCAMP3 606913 +HGNC:30385 SCAMP4 secretory carrier membrane protein 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ33847 Secretory carrier membrane proteins 735 2004-02-13 2014-11-18 113178 ENSG00000227500 OTTHUMG00000154590 uc002luj.5 AK091166 NM_079834 CCDS45903 Q969E2 MGI:1928947 RGD:68354 SCAMP4 613764 +HGNC:30386 SCAMP5 secretory carrier membrane protein 5 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 MGC24969 Secretory carrier membrane proteins 735 2004-02-13 2014-05-20 192683 ENSG00000198794 OTTHUMG00000172704 uc002azk.3 AL833230 NM_138967 CCDS45306 Q8TAC9 12477932 MGI:1928948 RGD:68356 SCAMP5 613766 +HGNC:10566 SCAND1 SCAN domain containing 1 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "SDP1|RAZ1" SCAN domain-containing 1 2000-06-16 2002-01-14 2016-10-05 51282 ENSG00000171222 OTTHUMG00000032370 uc002xep.3 AF204271 NM_016558 CCDS13269 P57086 "10777584|10747874|12444922" MGI:1343132 RGD:1308530 SCAND1 610416 1137 +HGNC:10567 SCAND2P SCAN domain containing 2 pseudogene pseudogene pseudogene Approved 15q25.2 15q25.2 SCAND2 "SCAN domain-containing 2|SCAN domain containing 2" 2000-06-16 2013-01-09 2008-07-09 2016-02-04 54581 ENSG00000176700 OTTHUMG00000166569 AF229246 NR_003654 Q9GZW5 "11056053|12036577" 610417 774 +HGNC:42037 SCAND3P1 SCAN domain containing 3 pseudogene 1 pseudogene pseudogene Approved 13q13.3 13q13.3 2011-06-01 2011-06-01 100873886 ENSG00000232795 OTTHUMG00000016721 NG_032394 +HGNC:30634 SCAP SREBF chaperone protein-coding gene gene with protein product Approved 3p21.31 03p21.31 KIAA0199 SREBP cleavage activating protein WD repeat domain containing 362 2007-01-02 2014-11-19 22937 ENSG00000114650 OTTHUMG00000125539 uc003crh.2 BC020987 NM_012235 CCDS2755 Q12770 "8898195|8724849|10570913" MGI:2135958 RGD:1309378 SCAP 601510 +HGNC:13081 SCAPER S-phase cyclin A associated protein in the ER protein-coding gene gene with protein product Approved 15q24.3 15q24.3 Zfp291 ZNF291 zinc finger protein 291 Zinc fingers C2H2-type 28 2000-03-15 2007-08-20 2016-05-16 2016-05-16 49855 ENSG00000140386 OTTHUMG00000172655 uc002bby.4 "AB040887|AF242528" NM_020843 "CCDS53961|CCDS53962" Q9BY12 17698606 MGI:1925976 RGD:621585 SCAPER 611611 +HGNC:2002 SCAR2 spinocerebellar ataxia, autosomal recessive 2 phenotype phenotype only Approved 9q34.3 09q34.3 CLA1 cerebellar ataxia 1 (autosomal recessive) 1986-01-01 2006-07-18 2006-07-18 2006-07-18 1165 "4838888|10528257" +HGNC:32976 SCAR3 spinocerebellar ataxia, autosomal recessive 3 phenotype phenotype only Approved 6p23-p21 06p23-p21 2006-07-18 2011-02-10 85502 11175288 271250 +HGNC:19065 SCAR6 spinocerebellar ataxia, autosomal recessive 6 phenotype phenotype only Approved 20q11-q13 20q11-q13 "CLA4|CLA3" 2008-12-08 2014-01-30 12811539 +HGNC:19000 SCARA3 scavenger receptor class A member 3 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "CSR1|CSR|MSLR1|APC7|MSRL1" macrophage scavenger receptor-like 1 scavenger receptor class A, member 3 Scavenger receptors 1253 2002-09-06 2015-12-16 2016-10-05 51435 ENSG00000168077 OTTHUMG00000163898 uc003xga.2 AB007829 NM_016240 "CCDS34870|CCDS34871" Q6AZY7 "9747040|9580669" MGI:2444418 RGD:1309269 SCARA3 602728 +HGNC:28701 SCARA5 scavenger receptor class A member 5 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "FLJ23907|MGC45780|NET33" "scavenger receptor class A, member 5 (putative)|scavenger receptor class A, member 5" Scavenger receptors 1253 2005-10-04 2015-12-16 2015-12-16 286133 ENSG00000168079 OTTHUMG00000132172 uc003xgj.4 AK172746 NM_173833 CCDS6064 Q6ZMJ2 19154717 MGI:1918395 RGD:1306539 SCARA5 611306 +HGNC:1664 SCARB1 scavenger receptor class B member 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "SRB1|CLA-1|CLA1|SR-BI" CD36L1 "CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 1|scavenger receptor class B, member 1" Scavenger receptors 1253 1994-09-06 2002-09-06 2015-12-16 2016-10-05 949 ENSG00000073060 OTTHUMG00000168544 uc001ugm.5 Z22555 NM_005505 "CCDS9259|CCDS45008" Q8WTV0 7689561 MGI:893578 RGD:2302 SCARB1 601040 +HGNC:1665 SCARB2 scavenger receptor class B member 2 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "HLGP85|LIMPII|SR-BII|LIMP-2" CD36L2 "CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2 (lysosomal integral membrane protein II)|scavenger receptor class B, member 2" Scavenger receptors 1253 1994-09-07 2002-09-06 2015-12-16 2015-12-16 950 ENSG00000138760 OTTHUMG00000130099 uc003hju.3 D12676 NM_005506 "CCDS3577|CCDS56335" Q14108 1374238 MGI:1196458 RGD:621882 SCARB2 602257 165923 +HGNC:16820 SCARF1 scavenger receptor class F member 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "SREC|KIAA0149" "scavenger receptor expressed by endothelial cells|acetyl LDL receptor" scavenger receptor class F, member 1 Scavenger receptors 1253 2002-09-06 2015-12-16 2015-12-16 8578 ENSG00000074660 OTTHUMG00000090555 uc002fsz.3 D63483 NM_003693 "CCDS11007|CCDS45564" Q14162 "9395444|8590280" MGI:2449455 RGD:1309330 SCARF1 607873 +HGNC:19869 SCARF2 scavenger receptor class F member 2 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "SREC-II|SREC2|HUMZD58C02" scavenger receptor class F, member 2 Scavenger receptors 1253 2003-02-13 2015-12-16 2016-04-25 91179 ENSG00000244486 OTTHUMG00000150779 uc062bss.1 AF522196 XM_017029065 "CCDS13779|CCDS46666" Q96GP6 12154095 MGI:1858430 RGD:1306013 SCARF2 613619 244390 +HGNC:32555 SCARNA1 small Cajal body-specific RNA 1 non-coding RNA RNA, small nucleolar Approved 1p35.3 01p35.3 ACA35 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677774 ENSG00000252947 uc001boy.1 AJ609484 NR_002997 SR0000002 +HGNC:32558 SCARNA2 small Cajal body-specific RNA 2 non-coding RNA RNA, small nucleolar Approved 1q13.1 01q13.1 "mgU2-25/61|HBII-382" Small Cajal body-specific RNAs 847 2006-03-31 2015-01-30 677766 ENSG00000278249 OTTHUMG00000184013 uc057ixi.1 BK005568 NR_003023 15556860 SR0000023 +HGNC:32577 SCARNA3 small Cajal body-specific RNA 3 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 HBI-100 Small Cajal body-specific RNAs 847 2006-03-31 2014-11-19 677679 ENSG00000252906 uc057nmy.1 NR_002998 11387227 RGD:7489043 SR0000036 +HGNC:32560 SCARNA4 small Cajal body-specific RNA 4 non-coding RNA RNA, small nucleolar Approved 1q22 01q22 ACA26 Small Cajal body-specific RNAs 847 2006-03-31 2015-08-04 677771 ENSG00000280466 uc057lts.1 AJ609483 NR_003005 SR0000025 +HGNC:32561 SCARNA5 small Cajal body-specific RNA 5 non-coding RNA RNA, small nucleolar Approved 2q37.1 02q37.1 U87 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677775 ENSG00000252010 uc002vue.2 AY077737 NR_003008 12032087 615640 SR0000283 +HGNC:32562 SCARNA6 small Cajal body-specific RNA 6 non-coding RNA RNA, small nucleolar Approved 2q37.1 02q37.1 U88 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677772 ENSG00000251791 uc002vuf.2 AY077738 NR_003006 12032087 615641 SR0000284 +HGNC:32563 SCARNA7 small Cajal body-specific RNA 7 non-coding RNA RNA, small nucleolar Approved 3q25.22 03q25.22 U90 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677767 ENSG00000238741 uc003fdo.3 AY077740 NR_003001 12032087 615644 SR0000310 +HGNC:32564 SCARNA8 small Cajal body-specific RNA 8 non-coding RNA RNA, small nucleolar Approved 9p22.1 09p22.1 U92 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677776 ENSG00000251733 uc003znn.1 AY077742 NR_003009 12032087 615646 SR0000356 +HGNC:32566 SCARNA9 small Cajal body-specific RNA 9 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 "mgU2-19/30|Z32" Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 619383 ENSG00000254911 OTTHUMG00000167450 uc001pdv.4 BK005567 NR_002569 15556860 SR0000064 +HGNC:33559 SCARNA9L small Cajal body-specific RNA 9-like pseudogene pseudogene Approved Xp22.12 Xp22.12 small Cajal body-specific RNA 9-like (retrotransposed) Small Cajal body-specific RNAs 847 2008-05-29 2012-06-21 2015-02-27 100158262 NR_023358 +HGNC:32567 SCARNA10 small Cajal body-specific RNA 10 non-coding RNA RNA, small nucleolar Approved 12p13.31 12p13.31 U85 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 692148 ENSG00000239002 OTTHUMG00000169160 uc009zeo.1 AF308283 NR_004387 11157760 615639 SR0000073 +HGNC:32568 SCARNA11 small Cajal body-specific RNA 11 non-coding RNA RNA, small nucleolar Approved 12p13.31 12p13.31 ACA57 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677780 ENSG00000251898 uc001qpr.2 AJ609487 NR_003012 SR0000074 +HGNC:32569 SCARNA12 small Cajal body-specific RNA 12 non-coding RNA RNA, small nucleolar Approved 12p13.31 12p13.31 U89 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677777 ENSG00000238795 uc001qsg.3 AY077739 NR_003010 615642 SR0000075 +HGNC:32570 SCARNA13 small Cajal body-specific RNA 13 non-coding RNA RNA, small nucleolar Approved 14q32.12 14q32.12 U93 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677768 ENSG00000252481 uc001yel.4 AF492209 NR_003002 12409454 SR0000089 +HGNC:32571 SCARNA14 small Cajal body-specific RNA 14 non-coding RNA RNA, small nucleolar Approved 15q22.31 15q22.31 U100 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 692149 ENSG00000252712 uc010bhp.2 AY349601 NR_004388 14602913 SR0000210 +HGNC:32572 SCARNA15 small Cajal body-specific RNA 15 non-coding RNA RNA, small nucleolar Approved 15q25.2 15q25.2 ACA45 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677778 ENSG00000252690 uc061xcp.1 AJ609485 NR_003011 RGD:7489047 612675 SR0000215 +HGNC:32573 SCARNA16 small Cajal body-specific RNA 16 non-coding RNA RNA, small nucleolar Approved 17q25.2 17q25.2 ACA47 Small Cajal body-specific RNAs 847 2006-03-31 2015-01-30 677781 ENSG00000275143 uc061jcu.1 AJ609486 NR_003013 SR0000253 +HGNC:32574 SCARNA17 small Cajal body-specific RNA 17 non-coding RNA RNA, small nucleolar Approved 18q21.1 18q21.1 "mgU12-22/U4-8|U91" Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677769 ENSG00000251992 OTTHUMG00000179829 uc060pco.1 "BK005569|AY077741" NR_003003 15556860 615645 SR0000256 +HGNC:32559 SCARNA18 small Cajal body-specific RNA 18 non-coding RNA RNA, small nucleolar Approved 5q14.2 05q14.2 "U109|SCARNA18A" Small Cajal body-specific RNAs 847 2006-03-31 2015-10-29 677765 ENSG00000238835 uc003khz.3 AM055742 NR_003139 16361266 611329 SR0000324 +HGNC:52236 SCARNA18B small Cajal body-specific RNA 18B non-coding RNA RNA, small nucleolar Approved 1q31.2 01q31.2 2015-10-29 2015-10-29 107397392 ENSG00000238754 NR_135615 +HGNC:32578 SCARNA20 small Cajal body-specific RNA 20 non-coding RNA RNA, small nucleolar Approved 17q23.2 17q23.2 ACA66 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677681 ENSG00000252577 uc060cwb.1 NR_002999 16373490 SR0000247 +HGNC:32579 SCARNA21 small Cajal body-specific RNA 21 non-coding RNA RNA, small nucleolar Approved 17p13.1 17p13.1 "ACA68|SCARNA21A" Small Cajal body-specific RNAs 847 2006-03-31 2015-10-29 677763 ENSG00000252835 uc061hct.1 NR_003000 16373490 SR0000231 +HGNC:52237 SCARNA21B small Cajal body-specific RNA 21B non-coding RNA RNA, small nucleolar Approved 1p36.21 01p36.21 2015-10-29 2015-10-29 107397391 +HGNC:32580 SCARNA22 small Cajal body-specific RNA 22 non-coding RNA RNA, small nucleolar Approved 4p16.3 04p16.3 ACA11 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677770 ENSG00000249784 OTTHUMG00000161833 uc003gej.3 AJ609470 NR_003004 SR0000317 +HGNC:32581 SCARNA23 small Cajal body-specific RNA 23 non-coding RNA RNA, small nucleolar Approved Xp22.11 Xp22.11 ACA12 Small Cajal body-specific RNAs 847 2006-03-31 2013-09-05 677773 ENSG00000251869 uc004dbo.1 AJ609482 NR_003007 SR0000367 +HGNC:50385 SCARNA26A small Cajal body-specific RNA 26A non-coding RNA RNA, small nucleolar Approved 1q22 01q22 Small Cajal body-specific RNAs 847 2014-11-20 2015-09-30 106633810 NR_132762 25514182 +HGNC:51394 SCARNA26B small Cajal body-specific RNA 26B non-coding RNA RNA, small nucleolar Approved 1q22 01q22 Small Cajal body-specific RNAs 847 2014-11-20 2016-02-08 106633816 NR_132763 25514182 +HGNC:33614 SCARNA27 small Cajal body-specific RNA 27 non-coding RNA RNA, small nucleolar Approved 6p24.3 06p24.3 Small Cajal body-specific RNAs 847 2007-08-24 2011-04-13 100124533 AM413021 NR_003703 +HGNC:50388 SCARNA28 small Cajal body-specific RNA 28 non-coding RNA RNA, small nucleolar Approved 7q22.1 07q22.1 ZL1 Small Cajal body-specific RNAs 847 2014-11-20 2015-09-30 106633801 NR_132754 25514182 +HGNC:19186 SCASI spinocerebellar ataxia with saccadic intrusions phenotype phenotype only Approved 1p36 01p36 SCAR4 spinocerebellar ataxia, autosomal recessive 4 SCA24 spinocerebellar ataxia 24 (with saccadic intrusions) 2002-09-06 2002-10-14 2011-02-09 260415 "11960835|14681893" 607317 +HGNC:32973 SCAX2 spinocerebellar ataxia, X-linked 2 phenotype phenotype only Approved X X 2006-07-18 2006-07-18 727714 13541590 302600 +HGNC:32974 SCAX3 spinocerebellar ataxia, X-linked 3 phenotype phenotype only Approved X X 2006-07-18 2006-07-18 727715 3614654 301790 +HGNC:32975 SCAX4 spinocerebellar ataxia, X-linked 4 phenotype phenotype only Approved X X 2006-07-18 2006-07-18 727716 3470628 301840 +HGNC:24275 SCCPDH saccharopine dehydrogenase (putative) protein-coding gene gene with protein product Approved 1q44 01q44 "CGI-49|NET11" 2005-06-22 2015-07-16 51097 ENSG00000143653 OTTHUMG00000040221 uc001ibr.4 NM_016002 CCDS31084 Q8NBX0 10810093 MGI:1924486 RGD:1311440 SCCPDH +HGNC:10571 SCD stearoyl-CoA desaturase protein-coding gene gene with protein product Approved 10q24.31 10q24.31 FADS5 "acyl-CoA desaturase|fatty acid desaturase|delta-9-desaturase" SCDOS "stearoyl-CoA desaturase opposite strand|stearoyl-CoA desaturase (delta-9-desaturase)" Fatty acid desaturases 553 1995-01-03 2016-05-20 2016-10-05 6319 ENSG00000099194 OTTHUMG00000018906 uc001kqy.4 AF097514 NM_005063 CCDS7493 O00767 "7909540|10229681" "MGI:1353437|MGI:2670997|MGI:98239|MGI:98240" RGD:621176 SCD 604031 1.14.19.1 +HGNC:21088 SCD5 stearoyl-CoA desaturase 5 protein-coding gene gene with protein product Approved 4q21.22 04q21.22 "ACOD4|FLJ21032|FADS4|HSCD5" SCD4 stearoyl-CoA desaturase 4 Fatty acid desaturases 553 2003-05-16 2005-06-09 2005-06-09 2016-10-05 79966 ENSG00000145284 OTTHUMG00000130293 uc003hna.3 AF389338 NM_024906 "CCDS3595|CCDS34024" Q86SK9 12477932 SCD5 608370 +HGNC:10572 SCDP1 stearoyl-CoA desaturase pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 SCDP "stearoyl-CoA desaturase (delta-9-desaturase) pseudogene|stearoyl-CoA desaturase (delta-9-desaturase) pseudogene 1" 1999-07-30 2010-03-05 2016-06-27 2016-06-27 645313 ENSG00000226549 OTTHUMG00000059556 NG_016706 10229681 PGOHUM00000237298 +HGNC:10573 SCEL sciellin protein-coding gene gene with protein product Approved 13q22.3 13q22.3 "FLJ21667|MGC22531" LIM domain containing 1218 1998-11-26 2016-10-05 8796 ENSG00000136155 OTTHUMG00000017107 uc001vki.4 AF045941 NM_144777 "CCDS9458|CCDS9459|CCDS53877" O95171 9813070 MGI:1891228 RGD:1305102 SCEL 604112 +HGNC:39895 SCEL-AS1 SCEL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q22.3 13q22.3 SCEL antisense RNA 1 (non-protein coding) 2011-04-08 2012-08-15 2012-10-12 104355296 ENSG00000224347 OTTHUMG00000017106 uc058xpi.1 NR_126413 +HGNC:20726 SCFD1 sec1 family domain containing 1 protein-coding gene gene with protein product Approved 14q12 14q12 "RA410|KIAA0917|STXBP1L2|SLY1" C14orf163 chromosome 14 open reading frame 163 2003-03-25 2004-01-16 2004-01-15 2015-08-25 23256 ENSG00000092108 OTTHUMG00000029420 uc001wqm.3 AF110646 NM_182835 "CCDS9639|CCDS45092|CCDS58308" Q8WVM8 MGI:1924233 RGD:619828 SCFD1 +HGNC:30676 SCFD2 sec1 family domain containing 2 protein-coding gene gene with protein product Approved 4q12 04q12 "STXBP1L1|FLJ39514" 2004-01-15 2015-08-25 152579 ENSG00000184178 OTTHUMG00000160588 uc003gzu.4 AY299407 NM_152540 CCDS33984 Q8WU76 12477932 MGI:2443446 RGD:1562708 SCFD2 +HGNC:10575 SCG2 secretogranin II protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "CHGC|SgII|SN" "secretoneurin|chromogranin C" Granins 925 1999-01-26 2010-04-27 2016-10-05 7857 ENSG00000171951 OTTHUMG00000133166 uc002vnm.4 M25756 NM_003469 CCDS2457 P13521 "8617499|16101435" MGI:103033 RGD:3626 SCG2 118930 +HGNC:13707 SCG3 secretogranin III protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "SgIII|FLJ90833" Granins 925 2000-10-18 2015-03-16 29106 ENSG00000104112 OTTHUMG00000131748 uc002abh.4 AF078851 NM_013243 "CCDS10142|CCDS53947" Q8WXD2 "2053134|8825061" MGI:103032 RGD:621209 SCG3 611796 +HGNC:10816 SCG5 secretogranin V protein-coding gene gene with protein product Approved 15q13.3 15q13.3 "7B2|SgV" prohormone convertase chaperone SGNE1 secretory granule, neuroendocrine protein 1 (7B2 protein) Granins 925 1989-09-22 2006-03-20 2015-03-16 2016-10-05 6447 ENSG00000166922 OTTHUMG00000159447 uc001zha.3 Y00757 NM_003020 "CCDS45207|CCDS45208" P05408 "8162254|12646671" MGI:98289 RGD:3669 SCG5 173120 I21.001 +HGNC:12523 SCGB1A1 secretoglobin family 1A member 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "CC10|CCSP|CC16" Uteroglobin (Clara-cell specific 10-kD protein) UGB uteroglobin Secretoglobins 734 1992-11-03 2002-03-22 2016-01-05 2016-01-05 7356 ENSG00000149021 OTTHUMG00000167526 uc001ntj.4 NM_003357 CCDS8020 P11684 "1284526|22155607" MGI:98919 RGD:3934 SCGB1A1 192020 +HGNC:18392 SCGB1B1P secretoglobin family 1B member 1, pseudogene pseudogene pseudogene Approved 19q13.1 19q13.1 Abpa1p Secretoglobins 734 2013-10-23 2016-01-05 2016-02-08 22155607 +HGNC:20741 SCGB1B2P secretoglobin family 1B member 2, pseudogene pseudogene pseudogene Approved 19q13.11 19q13.11 SCGB4A1P Secretoglobins 734 2011-12-14 2016-01-05 2016-07-21 643719 ENSG00000268751 OTTHUMG00000182921 uc010xry.3 NR_027620 22155607 +HGNC:20943 SCGB1B3P secretoglobin family 1B member 3, pseudogene pseudogene pseudogene Approved 19q13.11 19q13.11 SCGB4A4 SCGB1B3 secretoglobin, family 1B, member 3 Secretoglobins 734 2011-12-14 2012-07-05 2016-01-05 2016-01-05 22155607 +HGNC:18394 SCGB1C1 secretoglobin family 1C member 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 RYD5 Secretoglobins 734 2005-01-11 2016-01-05 2016-01-05 147199 ENSG00000188076 OTTHUMG00000165539 uc001loa.1 AY026938 NM_145651 CCDS41581 Q8TD33 22155607 MGI:2655401 RGD:1561432 SCGB1C1 610176 +HGNC:51242 SCGB1C2 secretoglobin family 1C member 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 Secretoglobins 734 2014-10-08 2016-01-05 2016-01-05 653486 ENSG00000268320 OTTHUMG00000189257 XM_011535362 CCDS73933 P0DMR2 +HGNC:18395 SCGB1D1 secretoglobin family 1D member 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "LPHA|LIPA|MGC71958" "prostatein-like lipophilin A|lipophilin A (uteroglobin family member)" Secretoglobins 734 2002-03-22 2016-01-05 2016-10-05 10648 ENSG00000168515 OTTHUMG00000167505 uc001nsz.2 AJ224171 NM_006552 CCDS8015 O95968 "9720917|10066439|22155607" RGD:2324357 SCGB1D1 615060 +HGNC:18396 SCGB1D2 secretoglobin family 1D member 2 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "LPHB|LIPB" "prostatein-like lipophilin B|lipophilin B (uteroglobin family member), prostatein-like" Secretoglobins 734 2002-03-22 2016-06-17 2016-10-05 10647 ENSG00000124935 OTTHUMG00000167508 uc001ntb.4 AJ224172 NM_006551 CCDS8017 O95969 "10066439|9720917|22155607" RGD:708459 SCGB1D2 615061 +HGNC:31748 SCGB1D4 secretoglobin family 1D member 4 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 IIS Secretoglobins 734 2005-09-13 2016-01-05 2016-01-05 404552 ENSG00000197745 OTTHUMG00000167510 uc001ntd.2 AY236538 NM_206998 CCDS31583 Q6XE38 "15034037|15340161|22155607" RGD:1302961 SCGB1D4 615062 +HGNC:42735 SCGB1D5P secretoglobin family 1D member 5, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 SCGB1D1P1 secretoglobin, family 1D, member 1 pseudogene 1 Secretoglobins 734 2011-08-17 2011-12-14 2016-01-05 2016-07-21 100874258 ENSG00000248287 OTTHUMG00000161129 NG_032727 22155607 PGOHUM00000300065 +HGNC:7051 SCGB2A1 secretoglobin family 2A member 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "UGB3|LPHC|MGC71973" "lipophilin C|mammaglobin B|lacryglobin" MGB2 mammaglobin 2 Secretoglobins 734 1998-07-22 2002-03-22 2016-01-05 2016-10-05 4246 ENSG00000124939 OTTHUMG00000167506 uc001nta.2 AF071219 NM_002407 CCDS8016 O75556 "9806831|22155607" MGI:3780828 RGD:735031 SCGB2A1 604398 +HGNC:7050 SCGB2A2 secretoglobin family 2A member 2 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "UGB2|MGC71974" mammaglobin A MGB1 mammaglobin 1 Secretoglobins 734 1998-07-22 2002-03-22 2016-01-05 2016-10-05 4250 ENSG00000110484 OTTHUMG00000167509 uc001ntc.5 AF015224 NM_002411 CCDS8018 Q13296 "9488047|8631025|22155607" MGI:3780828 RGD:3424 SCGB2A2 605562 +HGNC:31898 SCGB2B1P secretoglobin family 2B member 1, pseudogene pseudogene pseudogene Approved 19q13.11 19q13.11 Abpbg1p Secretoglobins 734 2013-10-23 2016-01-05 2016-02-08 22155607 +HGNC:27616 SCGB2B2 secretoglobin family 2B member 2 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 SCGB4A2 SCGBL secretoglobin-like Secretoglobins 734 2009-01-14 2011-12-14 2016-01-05 2016-01-05 284402 ENSG00000205209 OTTHUMG00000182463 uc002nvo.2 AK093495 NM_001025591 CCDS32989 Q4G0G5 22155607 615063 +HGNC:31895 SCGB2B3P secretoglobin family 2B member 3, pseudogene pseudogene pseudogene Approved 19q13.11 19q13.11 "C2B|SCGB4A3P" Secretoglobins 734 2011-12-14 2016-01-05 2016-01-05 100130342 ENSG00000269811 OTTHUMG00000184882 NR_045208 22155607 PGOHUM00000234663 +HGNC:18384 SCGB3A1 secretoglobin family 3A member 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "UGRP2|HIN-1|HIN1|LU105|PnSP-2" "cytokine high in normal-1|pneumo secretory protein 2" Secretoglobins 734 2002-03-22 2016-01-05 2016-01-05 92304 ENSG00000161055 OTTHUMG00000130936 uc003mly.4 AF313458 NM_052863 CCDS4456 Q96QR1 "11682631|11481438|22155607" MGI:1915912 RGD:727901 SCGB3A1 606500 +HGNC:18391 SCGB3A2 secretoglobin family 3A member 2 protein-coding gene gene with protein product Approved 5q32 05q32 "UGRP1|LU103|PNSP1" "uteroglobin-related protein 1|pneumo secretory protein 1|uteroglobin related protein 1" Secretoglobins 734 2002-03-22 2016-01-05 2016-01-05 117156 ENSG00000164265 OTTHUMG00000129729 uc003lot.3 AF313455 NM_054023 CCDS4287 Q96PL1 "11682631|22155607" MGI:2153470 RGD:1564790 SCGB3A2 606531 +HGNC:16941 SCGN secretagogin, EF-hand calcium binding protein protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "SECRET|DJ501N12.8|SEGN|CALBL" calbindin-like EF-hand domain containing 863 2002-05-23 2016-10-05 10590 ENSG00000079689 OTTHUMG00000014409 uc003nfb.4 BC000336 XM_017010181 CCDS4561 O76038 10811645 MGI:2384873 RGD:1303281 SCGN 609202 +HGNC:15678 SCHIP1 schwannomin interacting protein 1 protein-coding gene gene with protein product Approved 3q25.32-q25.33 03q25.32-q25.33 SCHIP-1 "schwannomin interacting protein 1 variant 2|schwannomin interacting protein 1 variant 1" schwannomin-interacting protein 1 2001-05-09 2001-11-29 2013-09-23 29970 ENSG00000151967 OTTHUMG00000158934 uc003fcu.3 AF070614 NM_014575 "CCDS3186|CCDS56292|CCDS56293|CCDS56294" Q9P0W5 "10669747|8619474|17045569" MGI:1353557 SCHIP1 +HGNC:48603 SCHLAP1 SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 2q31.3 02q31.3 "SChLAP1|PCAT11" "Second Chromosome Locus Associated with Prostate 1|prostate cancer associated transcript 11" LINC00913 long intergenic non-protein coding RNA 913 Long non-coding RNAs 788 2013-05-21 2013-12-06 2013-12-06 2014-05-20 101669767 ENSG00000281131 OTTHUMG00000189571 JX117418 NR_104323 "24076601|24165726" 615568 +HGNC:33504 SCIMP SLP adaptor and CSK interacting membrane protein protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "DTFT5783|UNQ5783|FLJ32580|MGC163426|MGC163428" SLP65/SLP76, Csk-interacting membrane protein C17orf87 chromosome 17 open reading frame 87 2007-06-25 2011-11-23 2011-11-23 2014-11-19 388325 ENSG00000161929 OTTHUMG00000132914 uc002gbh.4 AY358809 NM_207103 "CCDS42242|CCDS62044|CCDS82046" Q6UWF3 21930792 MGI:3610314 RGD:1593299 614406 +HGNC:21695 SCIN scinderin protein-coding gene gene with protein product Approved 7p21.3 07p21.3 KIAA1905 adseverin Gelsolin/villins 950 2003-07-10 2015-06-02 85477 ENSG00000006747 OTTHUMG00000152385 uc003ssn.5 AF276507 NM_033128 "CCDS47545|CCDS47546" Q9Y6U3 MGI:1306794 RGD:735034 SCIN 613416 +HGNC:20806 SCKL3 Seckel syndrome 3 phenotype phenotype only Approved 14q23 14q23 2003-10-24 2011-02-10 386616 14571270 +HGNC:26406 SCLT1 sodium channel and clathrin linker 1 protein-coding gene gene with protein product Approved 4q28.2 04q28.2 "hCAP-1A|FLJ30655" 2006-07-18 2014-11-19 132320 ENSG00000151466 OTTHUMG00000133346 uc003igp.3 AK055217 NM_144643 "CCDS3740|CCDS77957|CCDS77958" Q96NL6 15797711 MGI:1914411 RGD:628721 SCLT1 611399 +HGNC:18161 SCLY selenocysteine lyase protein-coding gene gene with protein product Approved 2q37.3 02q37.3 SCL putative selenocysteine lyase 2004-02-03 2016-07-29 51540 ENSG00000132330 OTTHUMG00000133336 uc010fyv.5 AF175767 NM_016510 CCDS2524 Q96I15 10692412 MGI:1355310 RGD:1359514 SCLY 611056 4.4.1.16 +HGNC:19003 SCMH1 sex comb on midleg homolog 1 (Drosophila) protein-coding gene gene with protein product Approved 1p34.2 01p34.2 Scml3 "Sterile alpha motif domain containing|MBT domain containing" "760|1263" 2003-01-15 2016-10-05 22955 ENSG00000010803 OTTHUMG00000005720 uc057fhs.1 AF149045 XM_011541032 "CCDS461|CCDS30688|CCDS53301|CCDS53302|CCDS53303|CCDS53304" Q96GD3 10524249 MGI:1352762 RGD:1305788 SCMH1 616396 +HGNC:10580 SCML1 sex comb on midleg-like 1 (Drosophila) protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 sex comb on midleg (Drosophila)-like 1 Sterile alpha motif domain containing 760 1997-09-05 2001-11-28 2016-10-05 6322 ENSG00000047634 OTTHUMG00000021206 uc004cyc.5 NM_006746 "CCDS14182|CCDS35210|CCDS35211" Q9UN30 9570953 RGD:7723901 SCML1 300227 +HGNC:10581 SCML2 sex comb on midleg-like 2 (Drosophila) protein-coding gene gene with protein product Approved Xp22.13 Xp22.13 sex comb on midleg (Drosophila)-like 2 "Sterile alpha motif domain containing|MBT domain containing" "760|1263" 1999-06-17 2001-11-28 2016-10-05 10389 ENSG00000102098 OTTHUMG00000021212 uc004cyl.3 Y18004 NM_006089 CCDS14185 Q9UQR0 10331946 MGI:1340042 RGD:1564289 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SCML2 SCML2 300208 +HGNC:44329 SCML2P1 SCML2 pseudogene 1 pseudogene pseudogene Approved 18p11.31 18p11.31 2012-08-13 2014-12-17 2014-12-17 100421167 ENSG00000264127 OTTHUMG00000178891 NG_026306 PGOHUM00000234978 +HGNC:44330 SCML2P2 SCML2 pseudogene 2 pseudogene pseudogene Approved 16p12.1 16p12.1 2012-08-13 2014-12-17 2014-12-17 100421172 ENSG00000271105 OTTHUMG00000184811 NG_026403 PGOHUM00000249025 +HGNC:21397 SCML4 sex comb on midleg-like 4 (Drosophila) protein-coding gene gene with protein product Approved 6q21 06q21 dJ47M23.1 Sterile alpha motif domain containing 760 2003-06-11 2015-08-25 256380 ENSG00000146285 OTTHUMG00000015313 uc010kdf.5 XM_171128 "CCDS5060|CCDS69163|CCDS75500" Q8N228 MGI:2446140 RGD:1310898 SCML4 +HGNC:10585 SCN1A sodium voltage-gated channel alpha subunit 1 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "Nav1.1|GEFSP2|HBSCI|NAC1|SMEI" "SCN1|FEB3" "febrile convulsions 3|sodium channel, voltage-gated, type I, alpha subunit|sodium channel, voltage gated, type I alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1988-11-28 2016-02-05 2016-10-12 6323 ENSG00000144285 OTTHUMG00000044173 uc061peu.1 AB093548 NM_006920 "CCDS33316|CCDS54413|CCDS54414" P35498 "8062593|16382098|11823106" MGI:98246 RGD:69364 "Familial Hemiplegic Migraine (FHM) Variation Database|http://grenada.lumc.nl/LOVD2/FHM/home.php?select_db=SCN1A|LRG_8|http://www.lrg-sequence.org/LRG/LRG_8" SCN1A 182389 118489 objectId:578 +HGNC:10586 SCN1B sodium voltage-gated channel beta subunit 1 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "sodium channel, voltage-gated, type I, beta polypeptide|sodium channel, voltage-gated, type I, beta|sodium channel, voltage-gated, type I, beta subunit|sodium channel, voltage gated, type I beta subunit" "V-set domain containing|Immunoglobulin like domain containing|Sodium voltage-gated channel beta subunits" "590|594|1204" 1990-05-14 2016-02-05 2016-10-12 6324 ENSG00000105711 OTTHUMG00000182472 uc002nxp.4 NM_199037 "CCDS12441|CCDS46047" Q07699 8394762 MGI:98247 RGD:3631 LRG_420|http://www.lrg-sequence.org/LRG/LRG_420 SCN1B 600235 118498 +HGNC:10588 SCN2A sodium voltage-gated channel alpha subunit 2 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "Nav1.2|HBSCII|HBSCI" "SCN2A1|SCN2A2" "sodium channel, voltage-gated, type II, alpha 2 polypeptide|sodium channel, voltage-gated, type II, alpha 1 polypeptide|sodium channel, voltage-gated, type II, alpha subunit|sodium channel, voltage gated, type II alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1992-08-07 2007-01-23 2016-02-05 2016-02-05 6326 ENSG00000136531 OTTHUMG00000044172 uc061pdo.1 AB208888 NM_021007 "CCDS33313|CCDS33314" Q99250 "1317301|16382098" MGI:98248 RGD:3632 SCN2A 182390 118500 objectId:579 +HGNC:10589 SCN2B sodium voltage-gated channel beta subunit 2 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "sodium channel, voltage-gated, type II, beta polypeptide|sodium channel, voltage-gated, type II, beta|sodium channel, voltage-gated, type II, beta subunit|sodium channel, voltage gated, type II beta subunit" "V-set domain containing|Sodium voltage-gated channel beta subunits" "590|1204" 1988-11-28 2016-02-05 2016-02-05 6327 ENSG00000149575 OTTHUMG00000048248 uc001psf.3 AY358945 NM_004588 CCDS8390 O60939 10198179 MGI:106921 RGD:3633 SCN2B 601327 361157 +HGNC:10590 SCN3A sodium voltage-gated channel alpha subunit 3 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 Nav1.3 "sodium channel, voltage-gated, type III, alpha polypeptide|sodium channel, voltage-gated, type III, alpha subunit|sodium channel, voltage gated, type III alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1992-04-10 2016-02-05 2016-10-05 6328 ENSG00000153253 OTTHUMG00000044171 uc002ucx.4 AF035685 NM_006922 "CCDS33312|CCDS46440" Q9NY46 "9589372|16382098" MGI:98249 RGD:3635 SCN3A 182391 objectId:580 +HGNC:20665 SCN3B sodium voltage-gated channel beta subunit 3 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 HSA243396 "sodium channel, voltage-gated, type III, beta|sodium channel, voltage-gated, type III, beta subunit|sodium channel, voltage gated, type III beta subunit" "V-set domain containing|Sodium voltage-gated channel beta subunits" "590|1204" 2003-03-14 2016-02-05 2016-10-12 55800 ENSG00000166257 OTTHUMG00000166006 uc001pza.2 AJ243396 NM_018400 CCDS8442 Q9NY72 10688874 MGI:1918882 RGD:621657 LRG_421|http://www.lrg-sequence.org/LRG/LRG_421 SCN3B 608214 218675 +HGNC:10591 SCN4A sodium voltage-gated channel alpha subunit 4 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "Nav1.4|HYPP|SkM1" HYKPP "sodium channel, voltage-gated, type IV, alpha subunit|sodium channel, voltage gated, type IV alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1990-09-30 2016-02-05 2016-02-05 6329 ENSG00000007314 OTTHUMG00000179046 uc060iti.1 U24693 NM_000334 CCDS45761 P35499 "1654742|1659948|16382098" MGI:98250 RGD:3636 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=SCN4A SCN4A 603967 118507 objectId:581 +HGNC:10592 SCN4B sodium voltage-gated channel beta subunit 4 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 LQT10 "sodium channel, voltage-gated, type IV, beta|sodium channel, voltage-gated, type IV, beta subunit|sodium channel, voltage gated, type IV beta subunit" "V-set domain containing|Sodium voltage-gated channel beta subunits" "590|1204" 1990-09-30 2016-02-05 2016-10-12 6330 ENSG00000177098 OTTHUMG00000166994 uc001pse.4 AY149967 NM_174934 "CCDS8389|CCDS44744" Q8IWT1 MGI:2687406 RGD:631404 "SCN4B database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=SCN4B|LRG_330|http://www.lrg-sequence.org/LRG/LRG_330" SCN4B 608256 160018 +HGNC:10593 SCN5A sodium voltage-gated channel alpha subunit 5 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "Nav1.5|LQT3|HB1|HBBD|PFHB1|IVF|HB2|HH1|SSS1|CDCD2|CMPD2|ICCD" long QT syndrome 3 CMD1E "sodium channel, voltage-gated, type V, alpha (long QT syndrome 3)|sodium channel, voltage-gated, type V, alpha subunit|sodium channel, voltage gated, type V alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1992-04-10 2016-02-05 2016-10-12 6331 ENSG00000183873 OTTHUMG00000156166 uc062ihi.1 AJ310893 NM_198056 "CCDS46796|CCDS46797|CCDS46798|CCDS46799|CCDS54569|CCDS54570" Q14524 "7842012|15466643|16382098" MGI:98251 RGD:3637 "Gene Connection for the Heart|http://www.fsm.it/cardmoc/|SCN5A database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=SCN5A|LRG_289|http://www.lrg-sequence.org/LRG/LRG_289" SCN5A 600163 118513 objectId:582 +HGNC:10594 SCN7A sodium voltage-gated channel alpha subunit 7 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "Nav2.1|Nav2.2|NaG" SCN6A "sodium channel, voltage-gated, type VI, alpha|sodium channel, voltage-gated, type VII, alpha|sodium channel, voltage-gated, type VII, alpha subunit|sodium channel, voltage gated, type VII alpha subunit" 1992-04-10 2002-06-14 2016-02-05 2016-10-05 6332 ENSG00000136546 OTTHUMG00000154078 uc061pfq.1 M91556 XM_006712680 CCDS46442 Q01118 10198179 MGI:102965 RGD:61922 SCN7A 182392 +HGNC:10596 SCN8A sodium voltage-gated channel alpha subunit 8 protein-coding gene gene with protein product Approved 12q13.1 12q13.1 "Nav1.6|NaCh6|PN4|CerIII" MED "sodium channel, voltage gated, type VIII, alpha polypeptide|sodium channel, voltage gated, type VIII, alpha subunit|sodium channel, voltage gated, type VIII alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1995-08-23 2016-02-05 2016-02-05 6334 ENSG00000196876 OTTHUMG00000169490 uc001ryw.4 AB027567 NM_014191 "CCDS44891|CCDS53794|CCDS81692" Q9UQD0 "7670495|9828131|16382098" MGI:103169 RGD:3638 SCN8A 600702 293928 objectId:583 +HGNC:10597 SCN9A sodium voltage-gated channel alpha subunit 9 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "Nav1.7|PN1|NE-NA|NENA|ETHA" "sodium channel, voltage-gated, type IX, alpha polypeptide|sodium channel, voltage-gated, type IX, alpha subunit|sodium channel, voltage gated, type IX alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1996-04-12 2016-02-05 2016-10-12 6335 ENSG00000169432 OTTHUMG00000154044 uc002udr.2 X82835 NM_002977 CCDS46441 Q15858 "7720699|10198179|16382098" MGI:107636 RGD:69368 LRG_369|http://www.lrg-sequence.org/LRG/LRG_369 SCN9A 603415 118525 objectId:584 +HGNC:10582 SCN10A sodium voltage-gated channel alpha subunit 10 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "Nav1.8|hPN3|SNS|PN3" "sodium channel, voltage-gated, type X, alpha polypeptide|sodium channel, voltage-gated, type X, alpha subunit|sodium channel, voltage gated, type X alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1996-04-12 2016-02-05 2016-02-05 6336 ENSG00000185313 OTTHUMG00000048245 uc003ciq.4 AF117907 NM_006514 CCDS33736 Q9Y5Y9 "9839820|10198179|16382098" MGI:108029 RGD:3629 SCN10A 604427 325976 objectId:585 +HGNC:10583 SCN11A sodium voltage-gated channel alpha subunit 11 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "Nav1.9|NaN|SNS-2" SCN12A "sodium channel, voltage-gated, type XI, alpha polypeptide|sodium channel, voltage-gated, type XII, alpha|sodium channel, voltage-gated, type XI, alpha subunit|sodium channel, voltage gated, type XI alpha subunit" Sodium voltage-gated channel alpha subunits 1203 1998-11-06 2016-02-05 2016-02-05 11280 ENSG00000168356 OTTHUMG00000048246 uc062ihs.1 AF126739 NM_014139 CCDS33737 Q9UI33 "10444332|16382098" MGI:1345149 RGD:3630 SCN11A 604385 328924 objectId:586 +HGNC:23136 SCNM1 sodium channel modifier 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 MGC3180 2003-09-16 2015-09-02 79005 ENSG00000163156 OTTHUMG00000012258 uc001ewz.4 BC000264 NM_024041 "CCDS987|CCDS55636" Q9BWG6 12920299 MGI:1341284 RGD:1308968 SCNM1 608095 +HGNC:10599 SCNN1A sodium channel epithelial 1 alpha subunit protein-coding gene gene with protein product Approved 12p13 12p13 ENaCalpha SCNN1 "sodium channel, nonvoltage-gated 1 alpha|sodium channel, non-voltage-gated 1 alpha|sodium channel, non-voltage-gated 1 alpha subunit|sodium channel, non voltage gated 1 alpha subunit" Sodium channels epithelial 185 1994-07-12 2016-02-05 2016-02-05 6337 ENSG00000111319 OTTHUMG00000168268 uc001qnx.4 Z92978 NM_001038 "CCDS8543|CCDS53738|CCDS53739" P37088 "7896277|26772908" MGI:101782 RGD:3639 LOVD - Leiden Open Variation Database|https://grenada.lumc.nl/LOVD2/shared1/home.php?select_db=SCNN1A SCNN1A 600228 118532 objectId:738 +HGNC:10600 SCNN1B sodium channel epithelial 1 beta subunit protein-coding gene gene with protein product Approved 16p12.2-p12.1 16p12.2-p12.1 ENaCbeta Liddle syndrome "sodium channel, nonvoltage-gated 1, beta|sodium channel, non-voltage-gated 1, beta|sodium channel, non-voltage-gated 1, beta subunit|sodium channel, non voltage gated 1 beta subunit" Sodium channels epithelial 185 1994-12-20 2016-02-05 2016-02-05 6338 ENSG00000168447 OTTHUMG00000131608 uc002dln.3 X87159 XM_017023525 CCDS10609 P51168 26772908 MGI:104696 RGD:3640 LOVD - Leiden Open Variation Database|https://grenada.lumc.nl/LOVD2/shared1/home.php?select_db=SCNN1B SCNN1B 600760 118536 objectId:739 +HGNC:10601 SCNN1D sodium channel epithelial 1 delta subunit protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "ENaCdelta|dNaCh" "sodium channel, nonvoltage-gated 1, delta|sodium channel, non-voltage-gated 1, delta|sodium channel, non-voltage-gated 1, delta subunit|sodium channel, non voltage gated 1 delta subunit" Sodium channels epithelial 185 1997-04-16 2016-02-05 2016-10-05 6339 ENSG00000162572 OTTHUMG00000002081 uc001adt.2 U38254 NM_002978 CCDS44037 P51172 "8661065|26772908" SCNN1D 601328 objectId:740 +HGNC:10602 SCNN1G sodium channel epithelial 1 gamma subunit protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "ENaCgamma|SCNEG" "sodium channel, nonvoltage-gated 1, gamma|sodium channel, non-voltage-gated 1, gamma|sodium channel, non-voltage-gated 1, gamma subunit|sodium channel, non voltage gated 1 gamma subunit|sodium channe epithelial 1 gamma subunit" Sodium channels epithelial 185 1995-05-10 2016-02-05 2016-10-05 6340 ENSG00000166828 OTTHUMG00000131609 uc002dlm.2 U48937 NM_001039 CCDS10608 P51170 "7490094|26772908" MGI:104695 RGD:3641 LOVD - Leiden Open Variation Database|https://grenada.lumc.nl/LOVD2/shared1/home.php?select_db=SCNN1G SCNN1G 600761 118539 objectId:741 +HGNC:10603 SCO1 SCO1, cytochrome c oxidase assembly protein protein-coding gene gene with protein product Approved 17p13.1 17p13.1 SCOD1 "SCO (cytochrome oxidase deficient, yeast) homolog 1|SCO cytochrome oxidase deficient homolog 1 (yeast)" Mitochondrial respiratory chain complex assembly factors 645 1998-07-03 2016-08-11 2016-08-11 6341 ENSG00000133028 OTTHUMG00000130364 uc002gmr.5 AF026852 NM_004589 CCDS11158 O75880 9878253 MGI:106362 RGD:1559538 SCO1 603644 118543 +HGNC:10604 SCO2 SCO2, cytochrome c oxidase assembly protein protein-coding gene gene with protein product Approved 22q13.33 22q13.33 SCO1L MYP6 "SCO (cytochrome oxidase deficient, yeast) homolog 2|SCO cytochrome oxidase deficient homolog 2 (yeast)|myopia 6" Mitochondrial respiratory chain complex assembly factors 645 1999-10-12 2016-08-11 2016-08-11 9997 ENSG00000130489 OTTHUMG00000150251 uc021wsa.2 AL021683 NM_005138 CCDS14095 O43819 "10218584|16091356|23643385" MGI:3818630 SCO2 604272 118546 +HGNC:20335 SCOC short coiled-coil protein protein-coding gene gene with protein product Approved 4q31.1 04q31.1 "HRIHFB2072|SCOCO|UNC-69" short coiled coil protein 2003-01-24 2003-03-19 2016-10-05 60592 ENSG00000153130 OTTHUMG00000133416 uc003iib.2 AK027797 NM_032547 "CCDS3750|CCDS54806|CCDS54807" Q9UIL1 11303027 MGI:1927654 RGD:1311860 SCOC +HGNC:50601 SCOC-AS1 SCOC antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q31.1 04q31.1 2014-05-22 2014-05-22 100129858 ENSG00000196951 OTTHUMG00000161377 NR_033939 +HGNC:20339 SCOCP1 short coiled-coil protein pseudogene 1 pseudogene pseudogene Approved 14q23.1 14q23.1 short coiled coil protein pseudogene 1 2003-01-24 2003-03-19 2014-11-19 317767 ENSG00000258896 OTTHUMG00000171125 NG_011824 PGOHUM00000248193 +HGNC:10606 SCP2 sterol carrier protein 2 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 1991-07-24 2016-10-05 6342 ENSG00000116171 OTTHUMG00000008936 uc001cur.3 M75884 NM_002979 "CCDS572|CCDS30719|CCDS41338|CCDS44149|CCDS44150|CCDS53317|CCDS53318|CCDS53319|CCDS81325" P22307 "1703300|1718316" MGI:98254 RGD:3642 SCP2 184755 165921 +HGNC:16211 SCP2D1 SCP2 sterol binding domain containing 1 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "dJ1068E13.2|HSD22" sterol carrier protein 2-like protein C20orf79 "chromosome 20 open reading frame 79|SCP2 sterol-binding domain containing 1" 2001-07-17 2012-10-29 2016-04-06 2016-04-06 140856 ENSG00000132631 OTTHUMG00000031983 uc002wrk.4 AL035563 NM_178483 CCDS13139 Q9UJQ7 16501878 MGI:1913578 RGD:1308385 +HGNC:29507 SCPEP1 serine carboxypeptidase 1 protein-coding gene gene with protein product Approved 17q22 17q22 RISC retinoid inducible serine carboxypeptidase Carboxypeptidases 1321 2004-04-02 2012-09-20 59342 ENSG00000121064 OTTHUMG00000178129 uc002iuv.5 AF282618 NM_021626 CCDS11593 Q9HB40 "11447226|12975309" MGI:1921867 RGD:620067 SCPEP1 S10.013 objectId:1585 +HGNC:17036 SCRG1 stimulator of chondrogenesis 1 protein-coding gene gene with protein product Approved 4q34.1 04q34.1 SCRG-1 scrapie responsive gene 1 2009-06-04 2014-11-19 11341 ENSG00000164106 OTTHUMG00000161249 uc003ite.4 AJ224677 NM_007281 CCDS3818 O75711 "9660755|9516475" MGI:1328308 RGD:68377 SCRG1 603163 +HGNC:30377 SCRIB scribbled planar cell polarity protein protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "KIAA0147|SCRB1|Vartul" scribbled homolog (Drosophila) "PDZ domain containing|Scribble complex" "1220|1224" 2004-05-21 2013-03-05 2013-03-05 23513 ENSG00000180900 OTTHUMG00000165154 uc003yzo.1 AY062238 NM_015356 "CCDS6411|CCDS6412" Q14160 "11027293|14681682" MGI:2145950 RGD:1565055 SCRIB 607733 +HGNC:22192 SCRN1 secernin 1 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 KIAA0193 2004-02-16 2015-09-02 9805 ENSG00000136193 OTTHUMG00000097093 uc011jzz.3 D83777 NM_014766 "CCDS5422|CCDS47567|CCDS47568" Q12765 12221138 MGI:1917188 RGD:1560999 SCRN1 614965 C69.003 +HGNC:30381 SCRN2 secernin 2 protein-coding gene gene with protein product Approved 17q21 17q21 2004-02-16 2015-08-25 90507 ENSG00000141295 OTTHUMG00000178290 uc002imd.4 BC002980 NM_138355 "CCDS11519|CCDS45723" Q96FV2 12221138 MGI:1343092 RGD:1307741 SCRN2 614966 C69.004 +HGNC:30382 SCRN3 secernin 3 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 FLJ23142 2004-02-16 2016-10-05 79634 ENSG00000144306 OTTHUMG00000132332 uc002uiq.4 AF279776 NM_024583 "CCDS2258|CCDS54420" Q0VDG4 12221138 MGI:1921866 RGD:1305064 SCRN3 614967 C69.005 +HGNC:15950 SCRT1 scratch family transcriptional repressor 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "DKFZp547F072|ZNF898" "scratch (drosophila homolog) 1, zinc finger protein|scratch homolog 1, zinc finger protein (Drosophila)" "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 2001-06-21 2016-05-04 2016-05-04 83482 ENSG00000261678 OTTHUMG00000165229 uc033ccm.1 BC014675 NM_031309 CCDS6421 Q9BWW7 11274425 MGI:2176606 RGD:1306236 SCRT1 605858 489 +HGNC:15952 SCRT2 scratch family transcriptional repressor 2 protein-coding gene gene with protein product Approved 20p13 20p13 ZNF898B "scratch (drosophila homolog) 2, zinc finger protein|scratch homolog 2, zinc finger protein (Drosophila)" "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 2001-06-21 2016-05-04 2016-05-04 85508 ENSG00000215397 OTTHUMG00000130829 uc002wec.3 NM_033129 CCDS13006 Q9NQ03 11274425 MGI:2139287 RGD:1564796 SCRT2 356 +HGNC:10607 SCT secretin protein-coding gene gene with protein product Approved 11p15.5 11p15.5 prepro-secretin Endogenous ligands 542 1994-01-27 2014-11-19 6343 ENSG00000070031 OTTHUMG00000133313 uc001lqo.2 AF244355 NM_021920 CCDS7709 P09683 2315322 MGI:99466 RGD:3643 SCT 182099 +HGNC:10608 SCTR secretin receptor protein-coding gene gene with protein product Approved 2q14.2 02q14.2 Glucagon receptor family 269 1994-01-27 2016-10-05 6344 ENSG00000080293 OTTHUMG00000131407 uc002tma.4 XM_011511621 CCDS2127 P47872 1646711 MGI:2441720 RGD:621342 SCTR 182098 objectId:252 +HGNC:13441 SCUBE1 signal peptide, CUB domain and EGF like domain containing 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 signal peptide, CUB domain, EGF-like 1 2002-02-13 2016-01-21 2016-10-05 80274 ENSG00000159307 OTTHUMG00000150679 uc003bdt.3 NM_173050 CCDS14048 Q8IWY4 11087664 MGI:1890616 RGD:1309015 SCUBE1 611746 +HGNC:30425 SCUBE2 signal peptide, CUB domain and EGF like domain containing 2 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "Cegf1|Cegb1|FLJ16792" signal peptide, CUB domain, EGF-like 2 2004-05-19 2016-01-21 2016-04-25 57758 ENSG00000175356 OTTHUMG00000163880 uc001mhi.3 AK131552 NM_020974 "CCDS53599|CCDS7797|CCDS81553" Q9NQ36 "12270931|11528127" MGI:1928765 RGD:1563998 SCUBE2 611747 +HGNC:13655 SCUBE3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding gene gene with protein product Approved 6p21.3 06p21.3 FLJ34743 CEGF3 "CUB domain and EGF-like repeat containing 3|signal peptide, CUB domain, EGF-like 3" 2003-05-28 2004-05-21 2016-01-21 2016-01-21 222663 ENSG00000146197 uc003okf.2 AF452494.1 NM_152753 CCDS4800 Q8IX30 12270931 MGI:3045253 RGD:1304880 SCUBE3 614708 +HGNC:32322 SCX scleraxis bHLH transcription factor protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "bHLHa48|bHLHa41" "SCXA|SCXB" "scleraxis homolog A (mouse)|scleraxis homolog B (mouse)|scleraxis homolog (mouse)|scleraxis basic helix-loop-helix transcription factor" Basic helix-loop-helix proteins 420 2005-10-05 2014-06-19 2015-06-16 2015-08-25 642658 ENSG00000260428 OTTHUMG00000175582 XM_926116 CCDS43779 Q7RTU7 19362560 MGI:102934 RGD:1588254 609067 +HGNC:14372 SCYL1 SCY1 like pseudokinase 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "HT019|P105|GKLP|NKTL|TAPK|TRAP|TEIF|MGC78454" "teratoma-associated tyrosine kinase|telomerase transcriptional elements-interacting factor|telomerase regulation-associated protein" NTKL "N-terminal kinase-like|SCY1-like 1 (S. cerevisiae)|SCY1-like, kinase-like 1" SCY1 like pseudokinases 1033 2001-01-16 2002-11-29 2016-02-26 2016-10-05 57410 ENSG00000142186 OTTHUMG00000166325 uc001oea.2 AF225424 NM_020680 "CCDS41672|CCDS44646" Q96KG9 11118629 MGI:1931787 RGD:1307330 SCYL1 607982 objectId:2195 +HGNC:19286 SCYL2 SCY1 like pseudokinase 2 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "KIAA1360|CVAK104" coated vesicle-associated kinase of 104 kDa "SCY1-like 2 (S. cerevisiae)|SCY1-like, kinase-like 2" SCY1 like pseudokinases 1033 2005-01-20 2016-02-26 2016-02-26 55681 ENSG00000136021 OTTHUMG00000170319 uc001thn.4 AB037781 NM_017988 "CCDS9076|CCDS81726" Q6P3W7 "10718198|15809293|17587408" MGI:1289172 RGD:1305665 SCYL2 616365 objectId:2196 +HGNC:19285 SCYL3 SCY1 like pseudokinase 3 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "PACE-1|PACE1" ezrin-binding partner PACE-1 "SCY1-like 3 (S. cerevisiae)|SCY1-like, kinase-like 3" SCY1 like pseudokinases 1033 2005-03-01 2016-02-26 2016-02-26 57147 ENSG00000000457 OTTHUMG00000035941 uc001ggs.5 BC014662 NM_181093 "CCDS1286|CCDS1287" Q8IZE3 12651155 MGI:1921385 RGD:1308992 SCYL3 608192 +HGNC:10649 SCZD1 schizophrenia disorder 1 phenotype phenotype only Approved 5q11.2-q13.3 05q11.2-q13.3 1989-04-12 1997-09-05 6377 2903449 181510 +HGNC:10650 SCZD2 schizophrenia disorder 2 phenotype phenotype only Approved 11q14-q21 11q14-q21 1989-06-02 2011-02-10 6378 603342 +HGNC:10651 SCZD3 schizophrenia disorder 3 phenotype phenotype only Approved 6pter-p22 06pter-p22 1995-10-18 6365 7647789 600511 +HGNC:10652 SCZD4 schizophrenia disorder 4 phenotype phenotype only Approved 22q11-q13 22q11-q13 1997-05-15 2011-02-10 8178837 +HGNC:10653 SCZD5 schizophrenia disorder 5 phenotype phenotype only Approved 6q13-q26 06q13-q26 1997-09-05 1997-09-05 9226366 +HGNC:10654 SCZD6 schizophrenia disorder 6 phenotype phenotype only Approved 8p21 08p21 1998-09-17 1998-11-12 8400 603013 +HGNC:10655 SCZD7 schizophrenia disorder 7 phenotype phenotype only Approved 13q32 13q32 1998-09-17 1998-09-17 8401 603176 +HGNC:10656 SCZD8 schizophrenia disorder 8 phenotype phenotype only Approved 18p 18p 1998-12-17 1998-12-17 8806 9758604 603206 +HGNC:17339 SCZD10 schizophrenia disorder 10 (periodic catatonia) phenotype phenotype only Approved 15q15 15q15 2001-12-10 2014-01-29 63944 "11001582|22162401" 605419 +HGNC:25537 SDAD1 SDA1 domain containing 1 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 FLJ10498 2004-04-05 2016-10-05 55153 ENSG00000198301 OTTHUMG00000130111 uc003hje.6 AF132198 NM_018115 "CCDS3573|CCDS75147" Q9NVU7 11483580 MGI:2140779 RGD:1359112 SDAD1 +HGNC:31403 SDAD1P1 SDA1 domain containing 1 pseudogene 1 pseudogene pseudogene Approved 8p21.2 08p21.2 2004-04-05 2010-11-24 157489 ENSG00000228451 OTTHUMG00000163945 NG_006994 PGOHUM00000250004 +HGNC:31404 SDAD1P2 SDA1 domain containing 1 pseudogene 2 pseudogene pseudogene Approved 20p12.2 20p12.2 2004-04-05 2014-11-19 400836 ENSG00000230750 OTTHUMG00000031870 NG_021986 PGOHUM00000247591 +HGNC:39260 SDAD1P3 SDA1 domain containing 1 pseudogene 3 pseudogene pseudogene Approved 3p22.3 03p22.3 2010-11-24 2010-11-24 100873858 ENSG00000227707 OTTHUMG00000155868 NG_032239 PGOHUM00000237990 +HGNC:39261 SDAD1P4 SDA1 domain containing 1 pseudogene 4 pseudogene pseudogene Approved 13q12.12 13q12.12 2010-11-24 2010-11-24 100419955 ENSG00000236803 OTTHUMG00000016561 NG_024899 PGOHUM00000248530 +HGNC:10658 SDC1 syndecan 1 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 "CD138|syndecan|SYND1" syndecan proteoglycan 1 SDC "CD molecules|Syndecans" "471|571" 1991-03-18 2014-11-19 6382 ENSG00000115884 OTTHUMG00000090751 uc002rdp.2 AJ551176 NM_001006946 CCDS1697 P18827 MGI:1349162 RGD:3648 SDC1 186355 CD138 +HGNC:10659 SDC2 syndecan 2 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "fibroglycan|SYND2|CD362" syndecan proteoglycan 2 "HSPG|HSPG1" heparan sulfate proteoglycan 1, cell surface-associated "CD molecules|Syndecans" "471|571" 1989-06-30 2007-02-15 2016-10-05 6383 ENSG00000169439 OTTHUMG00000164689 uc003yhv.2 BC030133 NM_002998 CCDS6272 P34741 8187643 MGI:1349165 RGD:3649 SDC2 142460 +HGNC:10660 SDC3 syndecan 3 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "N-syndecan|SYND3" syndecan proteoglycan 3 syndecan 3 (N-syndecan) Syndecans 571 1994-05-16 2007-02-15 2014-11-19 9672 ENSG00000162512 OTTHUMG00000043646 uc001bse.3 AF248634 NM_014654 CCDS30661 O75056 "1556152|11527150" MGI:1349163 RGD:621486 SDC3 186357 +HGNC:10661 SDC4 syndecan 4 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "SYND4|amphiglycan|ryudocan" syndecan proteoglycan 4 syndecan 4 (amphiglycan, ryudocan) Syndecans 571 1994-05-17 2007-02-15 2016-10-05 6385 ENSG00000124145 OTTHUMG00000033083 uc002xnu.4 "X67016|D13292" NM_002999 CCDS13350 P31431 "7916598|1500433" MGI:1349164 RGD:3650 SDC4 600017 +HGNC:18903 SDC4P syndecan 4 pseudogene pseudogene pseudogene Approved 22q12.2 22q12.2 2002-07-22 2014-11-19 376844 ENSG00000214161 OTTHUMG00000151266 AF520746 NR_001580 12652906 +HGNC:10662 SDCBP syndecan binding protein protein-coding gene gene with protein product Approved 8q12.1 08q12.1 "SYCL|MDA-9" "syntenin|syntenin-1" PDZ domain containing 1220 1998-02-11 2015-11-09 2015-12-16 6386 ENSG00000137575 OTTHUMG00000164303 uc003xtn.3 AF000652 NM_005625 "CCDS6172|CCDS47862|CCDS47863|CCDS83298" O00560 9391086 MGI:1337026 RGD:621497 SDCBP 602217 +HGNC:15756 SDCBP2 syndecan binding protein 2 protein-coding gene gene with protein product Approved 20p13 20p13 "ST-2|SITAC18" syntenin-2 syndecan binding protein (syntenin) 2 PDZ domain containing 1220 2001-09-17 2015-12-16 2015-12-16 27111 ENSG00000125775 OTTHUMG00000031661 uc002wev.5 AF131809 NM_080489 "CCDS13013|CCDS42848" Q9H190 11152476 MGI:2385156 RGD:1307709 SDCBP2 +HGNC:44314 SDCBP2-AS1 SDCBP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p13 20p13 SDCBP2 antisense RNA 1 (non-protein coding) 2012-08-09 2012-08-15 2012-10-12 100507495 ENSG00000234684 OTTHUMG00000031671 uc002wex.4 "BC034773|DA094549|DA274215|DB454162" NR_040047 +HGNC:44685 SDCBP2P1 syndecan binding protein 2 pseudogene 1 pseudogene pseudogene Approved 6q13 06q13 syndecan binding protein (syntenin) 2 pseudogene 1 2012-12-04 2016-06-27 2016-06-27 106480801 ENSG00000223389 OTTHUMG00000015027 NG_044176 PGOHUM00000301851 +HGNC:44684 SDCBPP1 syndecan binding protein pseudogene 1 pseudogene pseudogene Approved 10p15.1 10p15.1 syndecan binding protein (syntenin) pseudogene 1 2012-12-04 2016-06-27 2016-06-27 100128930 ENSG00000226705 OTTHUMG00000017620 NG_011666 PGOHUM00000289733 +HGNC:44686 SDCBPP2 syndecan binding protein pseudogene 2 pseudogene pseudogene Approved 8q13.3 08q13.3 syndecan binding protein (syntenin) pseudogene 2 2012-12-04 2016-06-27 2016-06-27 100129960 ENSG00000247570 OTTHUMG00000160524 NG_030275 PGOHUM00000303587 +HGNC:44687 SDCBPP3 syndecan binding protein pseudogene 3 pseudogene pseudogene Approved Xp11.4 Xp11.4 syndecan binding protein (syntenin) pseudogene 3 2012-12-04 2016-06-27 2016-06-27 100131656 ENSG00000232801 OTTHUMG00000024113 NG_022592 PGOHUM00000304563 +HGNC:10667 SDCCAG3 serologically defined colon cancer antigen 3 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 NY-CO-3 1999-08-25 2016-05-19 10807 ENSG00000165689 OTTHUMG00000020928 uc004chj.4 AF039688 NM_006643 "CCDS6999|CCDS43903|CCDS43904" Q96C92 9610721 MGI:1915362 RGD:1305930 SDCCAG3 +HGNC:29375 SDCCAG3P1 serologically defined colon cancer antigen 3 pseudogene 1 pseudogene pseudogene Approved 18q21.32 18q21.32 SDCCAG3L serologically defined colon cancer antigen 3-like 2005-01-18 2010-10-27 2010-10-27 2014-11-19 388478 ENSG00000256704 OTTHUMG00000179952 NG_005510 SDCCAG3P1 PGOHUM00000234940 +HGNC:39164 SDCCAG3P2 serologically defined colon cancer antigen 3 pseudogene 2 pseudogene pseudogene Approved 1q25.1 01q25.1 2010-10-27 2010-10-27 646891 ENSG00000181101 OTTHUMG00000034951 NG_022743 PGOHUM00000244346 +HGNC:10671 SDCCAG8 serologically defined colon cancer antigen 8 protein-coding gene gene with protein product Approved 1q43-q44 01q43-q44 "NY-CO-8|CCCAP|SLSN7|NPHP10|BBS16" "centrosomal colon cancer autoantigen protein|Bardet-Biedl syndrome 16|nephrocystin 10|Senior-Loken syndrome 7" Bardet-Biedl syndrome associated 980 1999-08-25 2016-10-11 10806 ENSG00000054282 OTTHUMG00000039996 uc001hzw.4 AF039690 NM_006642 CCDS31075 Q86SQ7 "9610721|20835237" MGI:1924066 RGD:727781 SDCCAG8 613524 244364 +HGNC:26643 SDE2 SDE2 telomere maintenance homolog protein-coding gene gene with protein product Approved 1q42.12 01q42.12 FLJ35382 C1orf55 "chromosome 1 open reading frame 55|SDE2 telomere maintenance homolog (S. pombe)" 2005-04-22 2012-06-26 2016-04-05 2016-04-05 163859 ENSG00000143751 OTTHUMG00000037504 uc001hpu.5 BC071563 NM_152608 CCDS41473 Q6IQ49 21333630 MGI:2384788 RGD:1305572 +HGNC:10675 SDF2 stromal cell derived factor 2 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 stromal cell-derived factor 2 1997-09-12 2016-01-18 2016-01-18 6388 ENSG00000132581 OTTHUMG00000132681 uc002hbw.4 BC001406 NM_006923 CCDS11238 Q99470 8918255 MGI:108019 RGD:1307274 SDF2 602934 +HGNC:10676 SDF2L1 stromal cell derived factor 2 like 1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "AP000553.C22.4|OTTHUMT00000075032" "dihydropyrimidinase-like 2|PWP1-interacting protein 8" stromal cell-derived factor 2-like 1 1999-10-29 2016-01-18 2016-01-18 23753 ENSG00000128228 OTTHUMG00000150820 uc002zvf.4 NM_022044 CCDS13792 Q9HCN8 "10591208|11162531" MGI:2149842 RGD:1585844 SDF2L1 607551 +HGNC:24188 SDF4 stromal cell derived factor 4 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 Cab45 calcium binding protein EF-hand domain containing 863 2005-05-24 2014-11-19 51150 ENSG00000078808 OTTHUMG00000001812 uc001adi.5 NM_016176 "CCDS12|CCDS30553" Q9BRK5 "9254016|8609160" MGI:108079 RGD:621521 SDF4 614282 +HGNC:10680 SDHA succinate dehydrogenase complex flavoprotein subunit A protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "FP|SDHF" "succinate dehydrogenase [ubiquinone] flavoprotein subunit|flavoprotein subunit of complex II" SDH2 "succinate dehydrogenase complex, subunit A, flavoprotein (Fp)|succinate dehydrogenase complex subunit A, flavoprotein (Fp)" Mitochondrial complex II: succinate dehydrogenase subunits 641 1995-10-24 2016-01-28 2016-10-12 6389 ENSG00000073578 OTTHUMG00000090275 uc003jao.5 BC001380 NM_004168 "CCDS3853|CCDS77992|CCDS82985" P31040 7798181 MGI:1914195 RGD:621557 "SDHA @ LOVD|http://www.LOVD.nl/SDHA|TCA Cycle Gene Mutation Database|http://chromium.liacs.nl/LOVD2/SDH/home.php?select_db=SDHA|LRG_315|http://www.lrg-sequence.org/LRG/LRG_315" SDHA 600857 118549 +HGNC:33867 SDHAF1 succinate dehydrogenase complex assembly factor 1 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 LYRM8 LYR motif containing 8 "LYR motif containing|Mitochondrial respiratory chain complex assembly factors" "635|645" 2009-05-27 2015-09-02 644096 ENSG00000205138 OTTHUMG00000181745 uc002ocp.4 NM_001042631 CCDS32999 A6NFY7 19465911 MGI:1915582 RGD:1562079 SDHAF1 612848 201507 +HGNC:26034 SDHAF2 succinate dehydrogenase complex assembly factor 2 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "FLJ20487|SDH5" "PGL2|C11orf79" "paraganglioma or familial glomus tumors 2|chromosome 11 open reading frame 79" Mitochondrial respiratory chain complex assembly factors 645 2007-02-02 2009-08-10 2009-08-10 2016-10-12 54949 ENSG00000167985 OTTHUMG00000168279 uc001nrt.4 AK000494 NM_017841 CCDS8007 Q9NX18 19628817 MGI:1913322 RGD:1309216 LRG_519|http://www.lrg-sequence.org/LRG/LRG_519 SDHAF2 613019 209279 +HGNC:21752 SDHAF3 succinate dehydrogenase complex assembly factor 3 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "DC11|Sdh7|LYRM10" ACN9 ACN9 homolog (S. cerevisiae) "LYR motif containing|Mitochondrial respiratory chain complex assembly factors" "635|645" 2003-07-23 2015-02-27 2015-02-27 2016-10-05 57001 ENSG00000196636 OTTHUMG00000154064 BC028409 NM_020186 CCDS5648 Q9NRP4 24954417 MGI:1913288 RGD:1305143 615773 +HGNC:20957 SDHAF4 succinate dehydrogenase complex assembly factor 4 protein-coding gene gene with protein product Approved 6q13 06q13 Sdh8 C6orf57 chromosome 6 open reading frame 57 Mitochondrial respiratory chain complex assembly factors 645 2003-04-24 2015-02-27 2015-02-27 2016-10-05 135154 ENSG00000154079 OTTHUMG00000014992 BC018085 NM_145267 CCDS4972 Q5VUM1 24954416 MGI:1915252 RGD:1588998 +HGNC:32455 SDHAP1 succinate dehydrogenase complex flavoprotein subunit A pseudogene 1 pseudogene pseudogene Approved 3q29 03q29 "SDHAL1|SDHALP1" "succinate dehydrogenase complex, subunit A, flavoprotein-like 1|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 1|succinate dehydrogenase complex subunit A, flavoprotein pseudogene 1" 2006-01-16 2009-12-02 2016-01-28 2016-01-28 255812 ENSG00000185485 OTTHUMG00000155716 BC071730 NR_003264 +HGNC:27408 SDHAP2 succinate dehydrogenase complex flavoprotein subunit A pseudogene 2 pseudogene pseudogene Approved 3q29 03q29 "SDHAL2|SDHALP2" "succinate dehydrogenase complex, subunit A, flavoprotein-like 2|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 2|succinate dehydrogenase complex subunit A, flavoprotein pseudogene 2" 2004-07-29 2009-12-02 2016-01-28 2016-01-28 727956 ENSG00000215837 OTTHUMG00000155835 AK074764 NR_003265 14702039 +HGNC:18781 SDHAP3 succinate dehydrogenase complex flavoprotein subunit A pseudogene 3 pseudogene pseudogene Approved 5p15.33 05p15.33 similar to succinate dehydrogenase flavoprotein subunit "SDHAL|SDHACL" "succinate dehydrogenase complex, subunit A, flavoprotein-like|SDHA C-terminal like|succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3|succinate dehydrogenase complex subunit A, flavoprotein pseudogene 3" 2004-03-26 2006-11-21 2016-01-28 2016-01-28 728609 ENSG00000185986 OTTHUMG00000161733 NR_003263 PGOHUM00000251283 +HGNC:10681 SDHB succinate dehydrogenase complex iron sulfur subunit B protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "iron-sulfur subunit of complex II|succinate dehydrogenase [ubiquinone] iron-sulfur subunit" "SDH1|SDH" "succinate dehydrogenase complex, subunit B, iron sulfur (Ip)|succinate dehydrogenase complex subunit B, iron sulfur (Ip)" Mitochondrial complex II: succinate dehydrogenase subunits 641 2001-06-22 2016-01-28 2016-10-12 6390 ENSG00000117118 OTTHUMG00000002289 uc001bae.5 U17248 NM_003000 CCDS176 P21912 MGI:1914930 RGD:1308598 "SDHB @ LOVD|http://www.LOVD.nl/SDHB|TCA Cycle Gene Mutation Database|http://chromium.liacs.nl/LOVD2/SDH/home.php?select_db=SDHB|LRG_316|http://www.lrg-sequence.org/LRG/LRG_316" SDHB 185470 118554 1.3.99.1 +HGNC:10682 SDHC succinate dehydrogenase complex subunit C protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "CYB560|cybL" "succinate dehydrogenase cytochrome b560 subunit|succinate dehydrgenase cytochrome b|large subunit of cytochrome b" PGL3 "succinate dehydrogenase complex, subunit C, integral membrane protein, 15kD|succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa" Mitochondrial complex II: succinate dehydrogenase subunits 641 1997-10-21 2015-11-09 2016-10-12 6391 ENSG00000143252 OTTHUMG00000034468 uc001gag.4 D49737 NM_003001 "CCDS1230|CCDS41431|CCDS41432|CCDS44263|CCDS60330" Q99643 "9533030|12658451" MGI:1913302 RGD:1359454 "SDHC @ LOVD|http://www.LOVD.nl/SDHC|TCA Cycle Gene Mutation Database|http://chromium.liacs.nl/LOVD2/SDH/home.php?select_db=SDHC|LRG_317|http://www.lrg-sequence.org/LRG/LRG_317" SDHC 602413 118558 +HGNC:31734 SDHCP1 succinate dehydrogenase complex subunit C pseudogene 1 pseudogene pseudogene Approved 18q22.1 18q22.1 succinate dehydrogenase complex, subunit C pseudogene 1 2010-06-17 2015-11-12 2015-11-12 100422600 ENSG00000264444 OTTHUMG00000178552 NG_026341 PGOHUM00000235094 +HGNC:45177 SDHCP2 succinate dehydrogenase complex subunit C pseudogene 2 pseudogene pseudogene Approved 10q23.32 10q23.32 succinate dehydrogenase complex, subunit C pseudogene 2 2013-03-04 2015-11-12 2015-11-12 100128302 ENSG00000214549 OTTHUMG00000018753 NG_029201 PGOHUM00000238889 +HGNC:45178 SDHCP3 succinate dehydrogenase complex subunit C pseudogene 3 pseudogene pseudogene Approved 2p23.3 02p23.3 succinate dehydrogenase complex, subunit C pseudogene 3 2013-03-04 2015-11-12 2015-11-12 100422591 ENSG00000234946 OTTHUMG00000151897 NG_023680 PGOHUM00000240597 +HGNC:45179 SDHCP4 succinate dehydrogenase complex subunit C pseudogene 4 pseudogene pseudogene Approved 11p15.1 11p15.1 succinate dehydrogenase complex, subunit C pseudogene 4 2013-03-04 2015-11-12 2015-11-12 100422598 ENSG00000255035 OTTHUMG00000166317 NG_024319 PGOHUM00000242179 +HGNC:10683 SDHD succinate dehydrogenase complex subunit D protein-coding gene gene with protein product Approved 11q23 11q23 cybS small subunit of cytochrome b "PGL|PGL1" succinate dehydrogenase complex, subunit D, integral membrane protein Mitochondrial complex II: succinate dehydrogenase subunits 641 1997-10-21 2016-01-28 2016-10-12 6392 ENSG00000204370 OTTHUMG00000166997 uc001pmz.5 AB006202 NM_003002 "CCDS31678|CCDS60958|CCDS60959|CCDS60960" O14521 "9533030|1301144" MGI:1914175 RGD:735231 "SDHD @ LOVD|http://www.LOVD.nl/SDHD|TCA Cycle Gene Mutation Database|http://chromium.liacs.nl/LOVD2/SDH/home.php?select_db=SDHD|LRG_9|http://www.lrg-sequence.org/LRG/LRG_9" SDHD 602690 118561 +HGNC:10684 SDHDP1 succinate dehydrogenase complex subunit D pseudogene 1 pseudogene pseudogene Approved 18p11.21 18p11.21 "succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 1|succinate dehydrogenase complex subunit D, integral membrane protein pseudogene 1" 2000-02-09 2016-01-28 2016-01-28 100289186 ENSG00000267162 OTTHUMG00000180685 NG_030063 10482792 PGOHUM00000234863 +HGNC:10685 SDHDP2 succinate dehydrogenase complex subunit D pseudogene 2 pseudogene pseudogene Approved 7q33 07q33 "succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 2|succinate dehydrogenase complex subunit D, integral membrane protein pseudogene 2" 2000-02-09 2016-01-28 2016-10-05 647081 ENSG00000227073 OTTHUMG00000155494 NG_009407 10482792 PGOHUM00000233578 +HGNC:10686 SDHDP3 succinate dehydrogenase complex subunit D pseudogene 3 pseudogene pseudogene Approved 3q26.3 03q26.3 "succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 3|succinate dehydrogenase complex subunit D, integral membrane protein pseudogene 3" 2000-02-09 2016-01-28 2016-01-28 29771 NG_005647 10482792 +HGNC:10687 SDHDP4 succinate dehydrogenase complex subunit D pseudogene 4 pseudogene pseudogene Approved 3p21.3 03p21.3 "succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 4|succinate dehydrogenase complex subunit D, integral membrane protein pseudogene 4" 2000-02-09 2016-01-28 2016-01-28 29770 NG_005646 10482792 +HGNC:10688 SDHDP5 succinate dehydrogenase complex subunit D pseudogene 5 pseudogene pseudogene Approved 2q32.1 02q32.1 "succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 5|succinate dehydrogenase complex subunit D, integral membrane protein pseudogene 5" 2000-02-09 2016-01-28 2016-01-28 29769 NG_031938 10482792 +HGNC:10689 SDHDP6 succinate dehydrogenase complex subunit D pseudogene 6 pseudogene pseudogene Approved 1p36.11 01p36.11 "succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 6|succinate dehydrogenase complex subunit D, integral membrane protein pseudogene 6" 2000-02-09 2016-01-28 2016-10-05 29768 ENSG00000224183 OTTHUMG00000003481 NG_007494 10482792 +HGNC:31410 SDHDP7 succinate dehydrogenase complex subunit D pseudogene 7 pseudogene pseudogene Approved 1p36.1 01p36.1 "succinate dehydrogenase complex, subunit D, integral membrane protein pseudogene 7|succinate dehydrogenase complex subunit D, integral membrane protein pseudogene 7" 2004-04-14 2016-01-28 2016-01-28 388606 XM_371232 +HGNC:38749 SDIM1 stress responsive DNAJB4 interacting membrane protein 1 protein-coding gene gene with protein product Approved 6q27 06q27 2011-01-31 2011-01-31 100505705 AK129633 XM_003118900 Q6ZPB5 21255413 SDIM1 +HGNC:19307 SDK1 sidekick cell adhesion molecule 1 protein-coding gene gene with protein product Approved 7p22.2 07p22.2 FLJ31425 "sidekick homolog 1 (chicken)|sidekick homolog 1, cell adhesion molecule (chicken)" "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2002-11-08 2011-12-09 2016-10-05 221935 ENSG00000146555 OTTHUMG00000151733 uc003smx.4 AK074077 NM_152744 CCDS34590 Q7Z5N4 "12230981|17307840|15213259" MGI:2444413 RGD:1560686 SDK1 607216 +HGNC:19308 SDK2 sidekick cell adhesion molecule 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "FLJ10832|KIAA1514" sidekick homolog 2 (chicken) "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 2002-11-08 2011-12-09 2016-10-05 54549 ENSG00000069188 OTTHUMG00000152726 uc010dfm.4 AB040947 NM_019064 CCDS45769 Q58EX2 "12230981|15213259" MGI:2443847 RGD:1310397 SDK2 607217 +HGNC:10690 SDPR serum deprivation response protein-coding gene gene with protein product Approved 2q32.3 02q32.3 "SDR|PS-p68|cavin-2|CAVIN2" phosphatidylserine binding protein "serum deprivation response (phosphatidylserine-binding protein)|serum deprivation response (phosphatidylserine binding protein)" Cavins 1326 1998-10-30 2009-09-18 2016-03-16 8436 ENSG00000168497 OTTHUMG00000154309 uc002utb.4 AF085481 NM_004657 CCDS2313 O95810 "10191091|8241023" MGI:99513 RGD:1359345 SDPR 606728 +HGNC:29958 SDR9C7 short chain dehydrogenase/reductase family 9C, member 7 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "SDR-O|RDHS" Short chain dehydrogenase/reductase superfamily 743 2008-12-22 2014-11-18 121214 ENSG00000170426 OTTHUMG00000171004 uc010sqw.2 AY044434 NM_148897 CCDS8926 Q8NEX9 "12234675|19027726" MGI:1917311 RGD:628716 SDR9C7 609769 1.1.1.- +HGNC:30311 SDR16C5 short chain dehydrogenase/reductase family 16C, member 5 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 "RDHE2|RDH-E2" Short chain dehydrogenase/reductase superfamily 743 2008-12-23 2015-09-02 195814 ENSG00000170786 OTTHUMG00000164311 uc003xsy.2 NM_138969 "CCDS6167|CCDS83295|CCDS83296" Q8N3Y7 12372410 MGI:2668443 RGD:1565999 SDR16C5 608989 1.1.1.- +HGNC:35413 SDR16C6P short chain dehydrogenase/reductase family 16C, member 6, pseudogene pseudogene pseudogene Approved 8q12.1 08q12.1 SDR16C6 short chain dehydrogenase/reductase family 16C, member 6 Short chain dehydrogenase/reductase superfamily 743 2008-12-08 2010-12-20 2010-12-20 2014-11-19 442388 ENSG00000253542 OTTHUMG00000164408 NR_103832 19027726 MGI:2685269 +HGNC:20275 SDR39U1 short chain dehydrogenase/reductase family 39U member 1 protein-coding gene gene with protein product Approved 14q12 14q12 HCDI C14orf124 chromosome 14 open reading frame 124 Short chain dehydrogenase/reductase superfamily 743 2003-01-17 2008-12-08 2016-01-20 2016-01-20 56948 ENSG00000100445 OTTHUMG00000171316 uc001wpm.4 AF226050 NM_020195 "CCDS45091|CCDS73626|CCDS76665" Q9NRG7 19027726 MGI:1916876 RGD:1309307 SDR39U1 616162 +HGNC:29834 SDR42E1 short chain dehydrogenase/reductase family 42E, member 1 protein-coding gene gene with protein product Approved 16q23.3 16q23.3 HSPC105 Short chain dehydrogenase/reductase superfamily 743 2008-12-08 2015-08-25 93517 ENSG00000184860 OTTHUMG00000166148 uc002fgu.4 AF161368 NM_145168 CCDS42205 Q8WUS8 19027726 MGI:1921282 RGD:1308481 SDR42E1 616164 1.1.1.- +HGNC:50378 SDR42E1P1 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1 pseudogene pseudogene Approved 9p12 09p12 2014-04-24 2016-10-05 100422340 ENSG00000273994 OTTHUMG00000067164 NG_023810 PGOHUM00000303805 +HGNC:51833 SDR42E1P2 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 2 pseudogene pseudogene Approved 9p11.1 09p11.1 2015-07-30 2015-07-31 100422346 ENSG00000277213 OTTHUMG00000189110 NG_023911 PGOHUM00000303834 +HGNC:51834 SDR42E1P3 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 3 pseudogene pseudogene Approved 9q13 09q13 2015-07-30 2015-07-31 100422347 ENSG00000234276 OTTHUMG00000013193 NG_023914 PGOHUM00000304249 +HGNC:51835 SDR42E1P4 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 4 pseudogene pseudogene Approved 9q21.11 09q21.11 2015-07-30 2015-07-31 100422348 ENSG00000273849 OTTHUMG00000188567 NG_023917 PGOHUM00000304301 +HGNC:51832 SDR42E1P5 short chain dehydrogenase/reductase family 42E, member 1 pseudogene 5 pseudogene pseudogene Approved 2q12.1 02q12.1 2015-07-30 2015-07-31 100422339 ENSG00000236785 OTTHUMG00000153095 NG_023715 PGOHUM00000298595 +HGNC:35414 SDR42E2 short chain dehydrogenase/reductase family 42E, member 2 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 Short chain dehydrogenase/reductase superfamily 743 2008-12-08 2012-04-20 100288072 ENSG00000183921 OTTHUMG00000183976 uc059ryf.1 XM_017023977 A6NKP2 19027726 RGD:6504299 SDR42E2 1.1.1.- +HGNC:10691 SDS serine dehydratase protein-coding gene gene with protein product Approved 12q24.13 12q24.13 SDH L-serine ammonia-lyase 1999-08-20 2015-08-25 10993 ENSG00000135094 OTTHUMG00000169554 uc001tvg.4 J05037 NM_006843 CCDS9169 P20132 2674117 MGI:98270 RGD:67376 SDS 182128 4.3.1.17 +HGNC:30404 SDSL serine dehydratase like protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "SDS-RS1|cSDH" serine dehydratase-like 2004-02-16 2016-03-11 2016-03-11 113675 ENSG00000139410 OTTHUMG00000169551 uc009zwh.4 AF134473 NM_138432 CCDS9170 Q96GA7 16580895 MGI:2182607 RGD:1309192 SDSL +HGNC:10692 SDU entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-02-17 +HGNC:10695 SEA S13 erythroblastosis (avian) oncogene homolog other unknown Approved 11q13 11q13 S13 avian erythroblastosis oncogene homolog 2001-06-22 2013-07-09 2013-07-09 6395 165110 +HGNC:32942 SEBOX SEBOX homeobox protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "OG9|OG9X" PRD class homeoboxes and pseudogenes 521 2007-07-26 2016-04-25 645832 ENSG00000274529 OTTHUMG00000171160 uc060cxq.1 NM_001080837 CCDS45634 Q9HB31 10922053 MGI:108012 RGD:62077 SEBOX 610975 8509 +HGNC:44149 SEC1P secretory blood group 1, pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 2012-06-30 2012-07-04 653677 ENSG00000232871 OTTHUMG00000154617 NR_004401 MGI:1928893 +HGNC:17718 SEC11A SEC11 homolog A, signal peptidase complex subunit protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "SPC18|sid2895|SPCS4A" signal peptidase complex 18 SEC11L1 "SEC11-like 1 (S. cerevisiae)|SEC11 homolog A (S. cerevisiae)" 2005-01-05 2006-11-07 2015-07-23 2015-07-23 23478 ENSG00000140612 OTTHUMG00000172489 uc002blb.3 AF061737 NM_014300 "CCDS45340|CCDS61742|CCDS61743|CCDS61744|CCDS73776" P67812 "2188978|23995782" MGI:1929464 RGD:69360 SEC11A S26.009 +HGNC:31884 SEC11B SEC11 homolog B, signal peptidase complex subunit (pseudogene) pseudogene pseudogene Approved 8q11.23 08q11.23 SPCS4B SEC11L2 "SEC11-like 2 (S. cerevisiae)|SEC11 homolog B (S. cerevisiae)|SEC11 homolog B, pseudogene (S. cerevisiae)" 2005-01-05 2006-11-07 2016-01-06 2016-01-06 157708 ENSG00000226098 OTTHUMG00000164378 NG_008902 P0C7V7 SEC11B PGOHUM00000262016 +HGNC:23400 SEC11C SEC11 homolog C, signal peptidase complex subunit protein-coding gene gene with protein product Approved 18q21.32 18q21.32 "SPC21|SPCS4C" signal peptidase complex 21 SEC11L3 "SEC11-like 3 (S. cerevisiae)|SEC11 homolog C (S. cerevisiae)" 2005-01-05 2006-11-07 2015-07-23 2015-07-23 90701 ENSG00000166562 OTTHUMG00000132762 uc002lht.4 AF212233 NM_033280 "CCDS11970|CCDS77193" Q9BY50 "2188978|23995782" MGI:1913536 RGD:628665 SEC11C S26.022 +HGNC:10697 SEC13 SEC13 homolog, nuclear pore and COPII coat complex component protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "SEC13R|npp-20" "D3S1231E|SEC13L1" "SEC13 (S. cerevisiae)-like 1|SEC13-like 1 (S. cerevisiae)|SEC13 homolog (S. cerevisiae)" "WD repeat domain containing|Nucleoporins" "362|1051" 1994-12-15 2006-11-07 2015-08-05 2016-10-05 6396 ENSG00000157020 OTTHUMG00000128671 uc003bvn.5 NM_001136026 "CCDS2599|CCDS46751|CCDS63540" P55735 "7987303|15146057|18692470" MGI:99832 RGD:1359555 SEC13 600152 +HGNC:44529 SEC13P1 SEC13 homolog, nuclear pore and COPII coat complex component pseudogene 1 pseudogene pseudogene Approved 3p22.3 03p22.3 SEC13 homolog (S. cerevisiae) pseudogene 1 2012-11-14 2015-08-05 2015-08-05 100131671 ENSG00000223899 OTTHUMG00000155780 NG_009005 PGOHUM00000237987 +HGNC:10698 SEC14L1 SEC14 like lipid binding 1 protein-coding gene gene with protein product Approved 17q25.2-q25.3 17q25.2-q25.3 PRELID4A SEC14L "SEC14 (S. cerevisiae)-like 1|SEC14-like 1 (S. cerevisiae)|SEC14-like lipid binding 1" "SEC14 family|PRELI domain containing" "1063|1295" 1996-03-12 2016-01-18 2016-10-11 6397 ENSG00000129657 OTTHUMG00000177311 uc021udx.2 D67029 NM_003003 "CCDS11752|CCDS42385|CCDS45789" Q92503 "8697811|17092608|17428729|23843640" MGI:1921386 RGD:1563123 SEC14L1 601504 +HGNC:44189 SEC14L1P1 SEC14 like 1 pseudogene 1 pseudogene pseudogene Approved 11p11.2 11p11.2 SEC14-like 1 pseudogene 1 2012-06-30 2016-01-18 2016-01-18 729799 ENSG00000213693 OTTHUMG00000166418 NR_026952 PGOHUM00000263379 +HGNC:10699 SEC14L2 SEC14 like lipid binding 2 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "TAP|SPF|KIAA1186|KIAA1658|TAP1" "supernatant protein factor|tocopherol-associated protein 1" C22orf6 "SEC14 (S. cerevisiae)-like 2|SEC14-like 2 (S. cerevisiae)|SEC14-like lipid binding 2" SEC14 family 1063 1999-10-12 2016-01-18 2016-01-18 23541 ENSG00000100003 OTTHUMG00000151024 uc032qlk.2 AL096881 NM_012429 "CCDS13876|CCDS46685|CCDS56228" O76054 "10829015|17428729|12757856" MGI:1915065 RGD:621779 SEC14L2 607558 +HGNC:18655 SEC14L3 SEC14 like lipid binding 3 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 TAP2 tocopherol-associated protein 2 "SEC14-like 3 (S. cerevisiae)|SEC14-like lipid binding 3" SEC14 family 1063 2002-09-18 2016-01-18 2016-01-18 266629 ENSG00000100012 OTTHUMG00000151259 uc003ahy.4 AY158086 NM_174975 "CCDS13877|CCDS58800|CCDS58801" Q9UDX4 "12757856|15040456|17428729" MGI:3617848 RGD:620812 SEC14L3 612824 +HGNC:20627 SEC14L4 SEC14 like lipid binding 4 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "TAP3|dJ130H16.5" tocopherol-associated protein 3 "SEC14-like 4 (S. cerevisiae)|SEC14-like lipid binding 4" SEC14 family 1063 2003-03-10 2016-01-18 2016-10-05 284904 ENSG00000133488 OTTHUMG00000151258 uc003aid.4 AY158085 NM_174977 "CCDS13878|CCDS54517" Q9UDX3 "12757856|20012369" MGI:2144095 SEC14L4 612825 +HGNC:29032 SEC14L5 SEC14 like lipid binding 5 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "KIAA0420|PRELID4B" "SEC14-like 5 (S. cerevisiae)|SEC14-like lipid binding 5" "SEC14 family|PRELI domain containing" "1063|1295" 2005-09-02 2016-01-18 2016-01-18 9717 ENSG00000103184 OTTHUMG00000176942 uc002cye.3 AB007880 NM_014692 CCDS45403 O43304 "9455477|17428729" MGI:3616084 RGD:1564638 SEC14L5 +HGNC:40047 SEC14L6 SEC14 like lipid binding 6 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "SEC14-like 6 (S. cerevisiae)|SEC14-like 6|SEC14-like lipid binding 6" SEC14 family 1063 2011-05-06 2016-01-18 2016-01-18 730005 ENSG00000214491 OTTHUMG00000151267 uc021wnu.2 NM_001193336 CCDS54518 B5MCN3 17428729 SEC14L6 +HGNC:29006 SEC16A SEC16 homolog A, endoplasmic reticulum export factor protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "p250|Sec16L" KIAA0310 "KIAA0310|SEC16 homolog A (S. cerevisiae)" 2004-02-06 2007-06-20 2015-07-23 2015-07-23 9919 ENSG00000148396 OTTHUMG00000020932 uc064xcg.1 AK074565 NM_014866 "CCDS55351|CCDS75936" O15027 "17192411|21045114" MGI:2139207 RGD:2322350 SEC16A 612854 +HGNC:30301 SEC16B SEC16 homolog B, endoplasmic reticulum export factor protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "RGPR|PGPR-p117|Sec16S" regucalcin gene promotor region related protein LZTR2 "leucine zipper transcription regulator 2|SEC16 homolog B (S. cerevisiae)" 2005-07-06 2007-06-20 2015-07-23 2015-07-23 89866 ENSG00000120341 OTTHUMG00000167206 uc001gli.2 AK090411 NM_033127 CCDS44281 Q96JE7 "11605020|17192411|21768384" MGI:2148802 RGD:621658 SEC16B 612855 +HGNC:20260 SEC22A SEC22 homolog A, vesicle trafficking protein protein-coding gene gene with protein product Approved 3q21.1 03q21.1 SEC22L2 "SEC22 vesicle trafficking protein-like 2 (S. cerevisiae)|SEC22 vesicle trafficking protein homolog A (S. cerevisiae)" SNAREs 1124 2003-02-04 2006-04-25 2015-08-05 2015-08-05 26984 ENSG00000121542 OTTHUMG00000159495 uc003ege.4 AF100749 NM_012430 CCDS3021 Q96IW7 "9094723|9501016" MGI:2447876 RGD:621659 SEC22A 612442 +HGNC:10700 SEC22B SEC22 homolog B, vesicle trafficking protein (gene/pseudogene) protein-coding gene gene with protein product Approved 1p12 01p12 "sec22b|ERS-24" SEC22L1 "SEC22, vesicle trafficking protein (S. cerevisiae)-like 1|SEC22 vesicle trafficking protein-like 1 (S. cerevisiae)|SEC22 vesicle trafficking protein homolog B (S. cerevisiae)|SEC22 vesicle trafficking protein homolog B (S. cerevisiae) (gene/pseudogene)" SNAREs 1124 1999-05-28 2006-04-25 2015-08-05 2016-10-05 9554 ENSG00000265808 OTTHUMG00000185008 uc031unv.2 AF047442 NM_004892 CCDS83523 O75396 "9094723|16354670|9950687" MGI:1338759 RGD:1309988 604029 +HGNC:16828 SEC22C SEC22 homolog C, vesicle trafficking protein protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "MGC13261|MGC5373" SEC22L3 "SEC22 vesicle trafficking protein-like 3 (S. cerevisiae)|SEC22 vesicle trafficking protein homolog C (S. cerevisiae)" SNAREs 1124 2003-02-04 2006-04-25 2015-08-05 2016-10-05 9117 ENSG00000093183 OTTHUMG00000131797 uc003clj.4 AF039568 NM_004206 "CCDS2699|CCDS2700|CCDS56246" Q9BRL7 "9501016|11001058" MGI:2447871 RGD:1590146 SEC22C 604028 +HGNC:10701 SEC23A Sec23 homolog A, coat complex II component protein-coding gene gene with protein product Approved 14q21.1 14q21.1 "Sec23 (S. cerevisiae) homolog A|Sec23 homolog A (S. cerevisiae)|Sec23 homolog A, COPII coat complex component" 2000-01-07 2016-04-06 2016-04-06 10484 ENSG00000100934 OTTHUMG00000028812 uc001wup.2 X97064 NM_006364 CCDS9668 Q15436 "8898360|10329445" MGI:1349635 RGD:1309103 SEC23A 610511 118565 +HGNC:10702 SEC23B Sec23 homolog B, coat complex II component protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "CDA-II|CDAII|HEMPAS" CDAN2 "Sec23 (S. cerevisiae) homolog B|congenital dyserythropoietic anemia, type II|Sec23 homolog B (S. cerevisiae)|Sec23 homolog B, COPII coat complex component" 2000-01-07 2016-04-06 2016-04-06 10483 ENSG00000101310 OTTHUMG00000031976 uc002wqz.3 X97065 XM_017027593 CCDS13137 Q15437 "8898360|10329445|19621418" MGI:1350925 RGD:1310699 SEC23B 610512 205932 +HGNC:17018 SEC23IP SEC23 interacting protein protein-coding gene gene with protein product Approved 10q26.11-q26.12 10q26.11-q26.12 p125 Sterile alpha motif domain containing 760 2003-04-03 2016-10-11 11196 ENSG00000107651 OTTHUMG00000019161 uc001leu.3 AB019435 XM_017015610 CCDS7618 Q9Y6Y8 10400679 MGI:2450915 RGD:1309328 SEC23IP +HGNC:10703 SEC24A SEC24 homolog A, COPII coat complex component protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "SEC24 (S. cerevisiae) related gene family, member A|SEC24 family, member A (S. cerevisiae)|SEC24 family member A" 2000-01-07 2015-08-05 2015-09-02 10802 ENSG00000113615 OTTHUMG00000163064 uc003kzs.4 AJ131244 NM_021982 "CCDS43363|CCDS58967" O95486 "10075675|10329445" MGI:1924621 RGD:1309451 SEC24A 607183 +HGNC:10704 SEC24B SEC24 homolog B, COPII coat complex component protein-coding gene gene with protein product Approved 4q25 04q25 "SEC24 (S. cerevisiae) related gene family, member B|SEC24 family, member B (S. cerevisiae)|SEC24 family member B" 2000-01-07 2015-08-05 2015-08-05 10427 ENSG00000138802 OTTHUMG00000161372 uc003hzl.4 AJ131245 XM_011531535 "CCDS43260|CCDS47124|CCDS75179" O95487 "10075675|10329445" MGI:2139764 RGD:1309358 SEC24B 607184 +HGNC:44003 SEC24B-AS1 SEC24B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q25 04q25 1/2-SBSRNA4 SEC24B antisense RNA 1 (non-protein coding) 2012-05-28 2012-08-15 2012-10-12 100533182 ENSG00000247950 OTTHUMG00000161048 uc062yym.1 BC009800 NR_039978 21307942 +HGNC:10705 SEC24C SEC24 homolog C, COPII coat complex component protein-coding gene gene with protein product Approved 10q22.2 10q22.2 KIAA0079 "SEC24 (S. cerevisiae) related gene family, member C|SEC24 family, member C (S. cerevisiae)|SEC24 family member C" 2000-01-07 2015-08-05 2016-10-05 9632 ENSG00000176986 OTTHUMG00000018476 uc001jux.4 D38555 XM_011540380 CCDS7332 P53992 "10214955|7584044" MGI:1919746 RGD:1597739 SEC24C 607185 458278 +HGNC:10706 SEC24D SEC24 homolog D, COPII coat complex component protein-coding gene gene with protein product Approved 4q26 04q26 KIAA0755 "SEC24 (S. cerevisiae) related gene family, member D|SEC24 family, member D (S. cerevisiae)|SEC24 family member D" 2000-01-07 2015-08-05 2015-08-05 9871 ENSG00000150961 OTTHUMG00000132957 uc003ici.5 AB018298 XM_005263379 CCDS3710 O94855 "9872452|10075675" MGI:1916858 RGD:1311720 SEC24D 607186 426017 +HGNC:17052 SEC31A SEC31 homolog A, COPII coat complex component protein-coding gene gene with protein product Approved 4q21.22 04q21.22 "KIAA0905|ABP125|ABP130" SEC31L1 "SEC31-like 1 (S. cerevisiae)|Sec31 homolog A (S. cerevisiae)|SEC31 homolog A (S. cerevisiae)" WD repeat domain containing 362 2004-01-12 2006-09-07 2015-08-05 2016-10-05 22872 ENSG00000138674 OTTHUMG00000130297 uc003hnm.4 AB018358 NM_016211 "CCDS3596|CCDS3597|CCDS43244|CCDS47088|CCDS54773|CCDS75155|CCDS75156" O94979 "10788476|18692470" MGI:1916412 RGD:620233 SEC31A 610257 +HGNC:23197 SEC31B SEC31 homolog B, COPII coat complex component protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "SEC31B-1|DKFZP434M183" SEC31L2 "SEC31-like 2 (S. cerevisiae)|SEC31 homolog B (S. cerevisiae)" WD repeat domain containing 362 2003-10-06 2006-09-07 2015-08-05 2016-10-05 25956 ENSG00000075826 OTTHUMG00000019342 uc001krc.2 AF274863 NM_015490 CCDS7495 Q9NQW1 16495487 MGI:2685187 RGD:1598329 SEC31B 610258 +HGNC:18276 SEC61A1 Sec61 translocon alpha 1 subunit protein-coding gene gene with protein product Approved 3q21.3 03q21.3 Sec61 alpha 1 subunit (S. cerevisiae) 2003-10-13 2015-07-29 2015-07-29 29927 ENSG00000058262 OTTHUMG00000159624 uc003ekb.4 AF077032 NM_013336 CCDS3046 P61619 "10212142|18480044" MGI:1858417 RGD:68321 SEC61A1 609213 +HGNC:17702 SEC61A2 Sec61 translocon alpha 2 subunit protein-coding gene gene with protein product Approved 10p14 10p14 FLJ10578 Sec61 alpha 2 subunit (S. cerevisiae) 2003-10-13 2015-07-29 2015-07-29 55176 ENSG00000065665 OTTHUMG00000017679 uc001ile.3 AF346603 NM_018144 "CCDS7088|CCDS44358|CCDS44359" Q9H9S3 "10212142|18480044" MGI:1931071 RGD:1305948 SEC61A2 +HGNC:16993 SEC61B Sec61 translocon beta subunit protein-coding gene gene with protein product Approved 9q22.33 09q22.33 Sec61 beta subunit 2003-10-13 2015-07-29 2015-07-29 10952 ENSG00000106803 OTTHUMG00000020354 uc004azh.4 L25085 NM_006808 CCDS6741 P60468 "8107851|10212142" MGI:1913462 RGD:1304997 SEC61B 609214 +HGNC:18277 SEC61G Sec61 translocon gamma subunit protein-coding gene gene with protein product Approved 7p11.2 07p11.2 SSS1 Sec61 gamma subunit 2003-11-14 2015-07-29 2015-07-29 23480 ENSG00000132432 OTTHUMG00000023430 uc064dsf.1 AF086539 NM_014302 CCDS5513 P60059 "8107851|10212142" MGI:1202066 RGD:1596170 SEC61G 609215 +HGNC:11846 SEC62 SEC62 homolog, preprotein translocation factor protein-coding gene gene with protein product Approved 3q26.2 03q26.2 "Dtrp1|HTP1" TLOC1 "translocation protein 1|SEC62 homolog (S. cerevisiae)" 1998-05-05 2008-04-22 2015-07-31 2015-08-25 7095 ENSG00000008952 OTTHUMG00000158753 uc003fgh.4 D87127 XM_011513114 CCDS3210 Q99442 "9020021|10799540|22375059" MGI:1916526 RGD:1308862 SEC62 602173 +HGNC:40586 SEC62-AS1 SEC62 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q26.2 03q26.2 SEC62 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-18 106478967 ENSG00000240373 OTTHUMG00000158754 uc062pvq.1 +HGNC:21082 SEC63 SEC63 homolog, protein translocation regulator protein-coding gene gene with protein product Approved 6q21 06q21 "SEC63L|PRO2507|ERdj2|DNAJC23" "SEC63-like (S. cerevisiae)|SEC63 homolog (S. cerevisiae)" DNAJ (HSP40) heat shock proteins 584 2003-05-15 2015-07-31 2015-07-31 11231 ENSG00000025796 OTTHUMG00000015316 uc003psc.5 BC048287 NM_007214 CCDS5061 Q9UGP8 "10219736|10543453|23166619" MGI:2155302 RGD:1304984 SEC63 608648 118567 +HGNC:41953 SEC63P1 SEC63 homolog, protein translocation regulator pseudogene 1 pseudogene pseudogene Approved 1p21.3 01p21.3 SEC63 homolog (S. cerevisiae) pseudogene 1 2011-05-20 2015-07-31 2015-07-31 100420341 ENSG00000228057 OTTHUMG00000039678 NG_008807 PGOHUM00000244805 +HGNC:41954 SEC63P2 SEC63 homolog, protein translocation regulator pseudogene 2 pseudogene pseudogene Approved 4p15.1 04p15.1 SEC63 homolog (S. cerevisiae) pseudogene 2 2011-05-20 2015-07-31 2015-07-31 100420287 ENSG00000250416 OTTHUMG00000160374 NG_025200 PGOHUM00000245877 +HGNC:30972 SECISBP2 SECIS binding protein 2 protein-coding gene gene with protein product Approved 9q22.2 09q22.2 2004-05-10 2016-10-05 79048 ENSG00000187742 OTTHUMG00000020182 uc004aqj.3 AF380995 NM_024077 "CCDS6683|CCDS65076|CCDS65077" Q96T21 11230166 MGI:1922670 RGD:620991 SECISBP2 607693 181119 +HGNC:28997 SECISBP2L SECIS binding protein 2 like protein-coding gene gene with protein product Approved 15q21.1 15q21.1 KIAA0256 2009-02-11 2016-03-02 2016-03-02 9728 ENSG00000138593 OTTHUMG00000172194 uc001zxd.4 BC033001 NM_014701 "CCDS32234|CCDS53942" Q93073 MGI:1917604 RGD:1559930 SECISBP2L 615756 +HGNC:10707 SECTM1 secreted and transmembrane 1 protein-coding gene gene with protein product Approved 17q25 17q25 K12 "K12 protein|type 1a transmembrane protein" 1997-10-27 2008-07-18 6398 ENSG00000141574 OTTHUMG00000178668 uc002keo.4 U77643 NM_003004 CCDS11808 Q8WVN6 9480746 MGI:2384805 RGD:735132 SECTM1 602602 +HGNC:30379 SEH1L SEH1 like nucleoporin protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "SEH1A|SEH1B|Seh1|SEC13L" "sec13 like protein|nucleoporin Seh1" "SEH1-like (S. cerevisiae)|SEH1-like nucleoporin" "WD repeat domain containing|Nucleoporins" "362|1051" 2004-07-08 2015-12-01 2015-12-01 81929 ENSG00000085415 OTTHUMG00000181909 uc002krr.5 BC012430 NM_031216 "CCDS32791|CCDS45832" Q96EE3 "12196509|14517296|15146057" MGI:1919374 RGD:6490353 SEH1L 609263 +HGNC:10717 SEL1L SEL1L ERAD E3 ligase adaptor subunit protein-coding gene gene with protein product Approved 14q31 14q31 "IBD2|SEL1L1" sel-1 suppressor of lin-12-like 1 (C. elegans) sel-1 suppressor of lin-12-like (C. elegans) 1997-04-25 2016-01-20 2016-01-20 6400 ENSG00000071537 OTTHUMG00000171419 uc010tvv.3 NM_005065 "CCDS9876|CCDS58333" Q9UBV2 "9417916|10051412|16331677" MGI:1329016 RGD:620147 SEL1L 602329 +HGNC:15897 SEL1L2 SEL1L2 ERAD E3 ligase adaptor subunit protein-coding gene gene with protein product Approved 20p12.1 20p12.1 DKFZp434C1826 C20orf50 "chromosome 20 open reading frame 50|sel-1 suppressor of lin-12-like 2 (C. elegans)" 2001-06-21 2006-11-24 2016-01-20 2016-01-20 80343 ENSG00000101251 OTTHUMG00000031910 uc061vme.1 AL137678 NM_025229 CCDS59443 Q5TEA6 MGI:2684964 RGD:1311278 SEL1L2 614289 +HGNC:29108 SEL1L3 SEL1L family member 3 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 KIAA0746 KIAA0746 protein sel-1 suppressor of lin-12-like 3 (C. elegans) 2009-09-24 2016-01-20 2016-01-20 23231 ENSG00000091490 OTTHUMG00000160331 uc003gru.5 BC009945 NM_015187 "CCDS47037|CCDS75113|CCDS77907" Q68CR1 9872452 MGI:1916941 RGD:1562860 SEL1L3 +HGNC:10718 SELE selectin E protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "ESEL|CD62E" "ELAM1|ELAM" endothelial adhesion molecule 1 "CD molecules|Selectins|Sushi domain containing|C-type lectin domain containing" "471|945|1179|1298" 1989-06-30 2008-07-31 2015-08-25 6401 ENSG00000007908 OTTHUMG00000034851 uc001ggm.5 M30640 NM_000450 CCDS1283 P16581 1375831 MGI:98278 RGD:3654 SELE 131210 118572 CD62E +HGNC:10719 SELENBP1 selenium binding protein 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "hSP56|hSBP|LPSB" 1999-01-15 2014-11-19 8991 ENSG00000143416 OTTHUMG00000012498 uc001exx.5 U29091 XR_921993 "CCDS995|CCDS58027|CCDS60266" Q13228 9027582 MGI:96825 RGD:620571 SELENBP1 604188 +HGNC:17705 SELENOF selenoprotein F protein-coding gene gene with protein product Approved 1p22.3 01p22.3 SEP15 selenoprotein F (15kDa) Selenoproteins 890 2016-09-18 2016-09-21 9403 ENSG00000183291 OTTHUMG00000008520 NM_004261 "CCDS76177|CCDS76178" "9535873|10945981" MGI:1927947 RGD:621291 606254 +HGNC:18251 SELENOH selenoprotein H protein-coding gene gene with protein product Approved 11q12.1 11q12.1 SELH C11orf31 chromosome 11 open reading frame 31 Selenoproteins 890 2002-02-19 2016-09-21 2016-09-21 2016-09-21 280636 ENSG00000211450 OTTHUMG00000167202 uc021qjj.2 AJ276249 NM_170746 CCDS44602 Q8IZQ5 12775843 MGI:1919907 RGD:1563348 607914 +HGNC:29361 SELENOI selenoprotein I protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "KIAA1724|SELI|SEPI" EPT1 "ethanolaminephosphotransferase 1 (CDP-ethanolamine-specific)|ethanolaminephosphotransferase 1" Selenoproteins 890 2010-03-01 2016-09-21 2016-09-21 2016-09-21 85465 ENSG00000138018 OTTHUMG00000151931 uc021veu.2 NM_033505.2 CCDS46240 Q9C0D9 "11214970|17132865" MGI:107898 RGD:1560938 607915 2.7.8.1 +HGNC:30394 SELENOK selenoprotein K protein-coding gene gene with protein product Approved 3p21.1 03p21.1 SELK Selenoproteins 890 2016-09-18 2016-09-21 58515 ENSG00000113811 OTTHUMG00000158656 NM_021237 CCDS54597 11042152 MGI:1931466 RGD:1303129 607916 +HGNC:30397 SELENOM selenoprotein M protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "SELM|SEPM" Selenoproteins 890 2016-09-18 2016-09-21 140606 ENSG00000198832 OTTHUMG00000151207 NM_080430 CCDS43003 11839807 MGI:2149786 RGD:1565037 610918 +HGNC:15999 SELENON selenoprotein N protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "SELN|RSS" "RSMD1|MDRS1|SEPN1" "rigid spine muscular dystrophy 1|selenoprotein N, 1" "EF-hand domain containing|Selenoproteins" "863|890" 2001-07-11 2016-09-21 2016-09-21 2016-10-12 57190 ENSG00000162430 OTTHUMG00000007375 uc021ojk.2 AF166125 NM_020451 "CCDS41282|CCDS41283" Q9NZV5 10608886 MGI:2151208 RGD:1304574 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SEPN1|LRG_857|http://www.lrg-sequence.org/LRG/LRG_857" 606210 118596 +HGNC:30395 SELENOO selenoprotein O protein-coding gene gene with protein product Approved 22q13.33 22q13.33 SELO Selenoproteins 890 2016-09-18 2016-09-21 83642 ENSG00000073169 OTTHUMG00000044645 NM_031454 CCDS43034 "12775843|22359664" MGI:1919007 RGD:1311907 607917 +HGNC:10751 SELENOP selenoprotein P protein-coding gene gene with protein product Approved 5q31 05q31 "SeP|SELP|SEPP" SEPP1 selenoprotein P, plasma, 1 Selenoproteins 890 1996-10-26 2016-09-21 2016-09-21 2016-09-21 6414 ENSG00000250722 OTTHUMG00000162140 uc063dhe.1 BC040075 NM_005410 CCDS43311 P49908 8421687 MGI:894288 RGD:3660 601484 +HGNC:30396 SELENOS selenoprotein S protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "SELS|MGC2553|SBBI8|AD-015|SEPS1" valosin-containing protein-interacting membrane protein VIMP "VCP-interacting membrane protein|VCP interacting membrane selenoprotein" Selenoproteins 890 2012-05-23 2016-09-21 2016-09-21 2016-09-21 55829 ENSG00000131871 OTTHUMG00000166441 uc059nyd.1 AF328864 NM_018445 CCDS53979 Q9BQE4 "16227999|16186510|15215856" MGI:95994 RGD:628897 607918 +HGNC:18136 SELENOT selenoprotein T protein-coding gene gene with protein product Approved 3q25.1 03q25.1 SELT Selenoproteins 890 2016-09-18 2016-09-21 51714 ENSG00000198843 OTTHUMG00000159825 NM_016275 CCDS46936 10567350 MGI:1916477 RGD:1359128 607912 +HGNC:30399 SELENOV selenoprotein V protein-coding gene gene with protein product Approved 19q13.2 19q13.2 SELV Selenoproteins 890 2016-09-18 2016-09-21 348303 ENSG00000186838 OTTHUMG00000166446 NM_182704 CCDS54266 12775843 MGI:3608324 RGD:1562943 607919 +HGNC:10752 SELENOW selenoprotein W protein-coding gene gene with protein product Approved 19q13.33 19q13.33 SELW SEPW1 selenoprotein W, 1 Selenoproteins 890 1997-12-16 2016-09-21 2016-09-21 2016-09-21 6415 ENSG00000178980 OTTHUMG00000183061 uc021uwp.2 U67171 NM_003009 CCDS59402 P63302 9256076 MGI:1100878 RGD:3661 603235 +HGNC:10753 SELENOWP1 selenoprotein W pseudogene 1 pseudogene pseudogene Approved 1p35.2 01p35.2 SEPW1P selenoprotein W, 1 pseudogene 1998-10-12 2016-09-21 2016-09-21 2016-09-21 23679 ENSG00000215900 OTTHUMG00000008500 AF083062 NG_002791 12818432 PGOHUM00000243954 +HGNC:10720 SELL selectin L protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "LSEL|LAM1|LAM-1|hLHRc|Leu-8|Lyam-1|PLNHR|CD62L" "LYAM1|LNHR" lymphocyte adhesion molecule 1 "CD molecules|Selectins|Sushi domain containing|C-type lectin domain containing" "471|945|1179|1298" 1989-06-07 2008-07-31 2015-08-25 6402 ENSG00000188404 OTTHUMG00000034809 uc001ggk.4 M25280 NM_000655 CCDS53427 P14151 "2664786|1375831" MGI:98279 RGD:3655 SELL 153240 118578 CD62L +HGNC:10721 SELP selectin P protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "CD62|PSEL|PADGEM|GMP140|CD62P" "antigen CD62|granule membrane protein 140kDa" GRMP "selectin P (granule membrane protein 140kD, antigen CD62)|selectin P (granule membrane protein 140kDa, antigen CD62)" "CD molecules|Selectins|Sushi domain containing|C-type lectin domain containing" "471|945|1179|1298" 1989-06-30 2015-11-16 2015-11-16 6403 ENSG00000174175 OTTHUMG00000034685 uc001ggi.5 BC068533 NM_003005 CCDS1282 P16109 1375831 MGI:98280 RGD:3656 SELP 173610 CD62P +HGNC:10722 SELPLG selectin P ligand protein-coding gene gene with protein product Approved 12q24 12q24 "PSGL-1|CD162" "CD molecules|Endogenous ligands" "471|542" 1995-01-31 2016-04-25 6404 ENSG00000110876 OTTHUMG00000169411 uc001tni.4 NM_003006 "CCDS31895|CCDS55881" Q14242 7505206 MGI:106689 RGD:1307971 SELPLG 600738 CD162 +HGNC:10723 SEMA3A semaphorin 3A protein-coding gene gene with protein product Approved 7q21.11 07q21.11 "SEMA1|SemD|coll-1|Hsema-I" sema III SEMAD sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A "Immunoglobulin like domain containing|Semaphorins" "594|736" 1999-06-25 2016-01-14 2016-10-05 10371 ENSG00000075213 OTTHUMG00000023443 uc003uhz.4 L26081 NM_006080 CCDS5599 Q14563 "8269517|7748561" MGI:107558 RGD:3657 SEMA3A 603961 294689 +HGNC:10724 SEMA3B semaphorin 3B protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "SemA|semaV|LUCA-1|sema5" SEMAA sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B "Immunoglobulin like domain containing|Semaphorins" "594|736" 1999-06-25 2016-01-14 2016-10-05 7869 ENSG00000012171 OTTHUMG00000156970 uc032rmz.2 U28369 NM_001005914 "CCDS74941|CCDS77743|CCDS77744|CCDS77745" Q13214 "7748561|8633026" MGI:107561 RGD:1310079 SEMA3B 601281 +HGNC:49096 SEMA3B-AS1 SEMA3B antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 2013-09-02 2013-09-02 101928931 ENSG00000232352 OTTHUMG00000156955 NR_110702 +HGNC:10725 SEMA3C semaphorin 3C protein-coding gene gene with protein product Approved 7q21.11 07q21.11 SemE SEMAE sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C "I-set domain containing|Semaphorins" "593|736" 1999-06-25 2016-01-14 2016-10-05 10512 ENSG00000075223 OTTHUMG00000023447 uc064evu.1 AB000220 NM_006379 CCDS5596 Q99985 "7748561|9168980" MGI:107557 RGD:1309343 SEMA3C 602645 431136 +HGNC:10726 SEMA3D semaphorin 3D protein-coding gene gene with protein product Approved 7q21.11 07q21.11 "coll-2|Sema-Z2" sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D "V-set domain containing|Semaphorins" "590|736" 1999-06-25 2016-01-14 2016-01-14 223117 ENSG00000153993 OTTHUMG00000154569 uc003uic.4 BC029590 NM_152754 CCDS34676 O95025 MGI:1860118 RGD:727939 SEMA3D 609907 431145 +HGNC:10727 SEMA3E semaphorin 3E protein-coding gene gene with protein product Approved 7q21.11 07q21.11 "M-SemaK|KIAA0331|coll-5" M-sema H SEMAH sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E "Immunoglobulin like domain containing|Semaphorins" "594|736" 1999-06-25 2016-01-14 2016-01-14 9723 ENSG00000170381 OTTHUMG00000154693 uc003uhy.3 AB002329 NM_012431 "CCDS34674|CCDS55121" O15041 "9205841|9515811" MGI:1340034 RGD:1310973 SEMA3E 608166 118590 +HGNC:10728 SEMA3F semaphorin 3F protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "SEMAK|Sema4" sema IV sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F "Immunoglobulin like domain containing|Semaphorins" "594|736" 1995-12-18 2016-01-14 2016-10-05 6405 ENSG00000001617 OTTHUMG00000156806 uc003cyj.4 U33920 NM_004186 "CCDS2811|CCDS82779|CCDS82780" Q13275 "8786119|8649831" MGI:1096347 RGD:1308514 SEMA3F 601124 +HGNC:40518 SEMA3F-AS1 SEMA3F antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 RBM5-AS1 2014-06-12 2014-11-19 100129060 ENSG00000235016 OTTHUMG00000156795 AK125500 NR_135301 +HGNC:30400 SEMA3G semaphorin 3G protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "FLJ00014|sem2" sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G "Immunoglobulin like domain containing|Semaphorins" "594|736" 2005-07-12 2016-01-14 2016-01-14 56920 ENSG00000010319 OTTHUMG00000158570 uc003dea.2 NM_020163 CCDS2856 Q9NS98 11214971 MGI:3041242 RGD:1306079 SEMA3G +HGNC:10729 SEMA4A semaphorin 4A protein-coding gene gene with protein product Approved 1q22 01q22 "SemB|FLJ12287|CORD10" SEMAB sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A Semaphorins 736 2004-04-22 2016-01-14 2016-01-14 64218 ENSG00000196189 OTTHUMG00000014042 uc001fnl.4 AK022416 NM_022367 "CCDS1132|CCDS53378" Q9H3S1 7748561 MGI:107560 RGD:1304636 SEMA4A 607292 158388 +HGNC:10730 SEMA4B semaphorin 4B protein-coding gene gene with protein product Approved 15q25 15q25 "SemC|KIAA1745|MGC131831" SEMAC sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B Semaphorins 736 1999-06-25 2016-01-14 2016-01-14 10509 ENSG00000185033 OTTHUMG00000172096 uc002boy.4 AB051532 NM_198925 CCDS45347 Q9NPR2 7748561 MGI:107559 RGD:1307872 SEMA4B 617029 +HGNC:10731 SEMA4C semaphorin 4C protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "Semacl1|Semaf" M-Sema F SEMAI sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C "Immunoglobulin like domain containing|Semaphorins" "594|736" 2004-02-04 2016-01-14 2016-01-14 54910 ENSG00000168758 OTTHUMG00000130535 uc002sxh.5 AB051526 NM_017789 CCDS2029 Q9C0C4 7656991 MGI:109252 RGD:1562837 SEMA4C 604462 +HGNC:10732 SEMA4D semaphorin 4D protein-coding gene gene with protein product Approved 9q22.2 09q22.2 "CD100|coll-4|FLJ39737" M-sema G "SEMAJ|C9orf164" "chromosome 9 open reading frame 164|sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D" "CD molecules|Immunoglobulin like domain containing|Semaphorins" "471|594|736" 1999-06-25 2016-01-14 2016-10-05 10507 ENSG00000187764 OTTHUMG00000020185 uc064ueq.1 U60800 NM_006378 "CCDS6685|CCDS47991" Q92854 "8876214|8969198" MGI:109244 RGD:1310554 SEMA4D 601866 objectId:2883 CD100 +HGNC:10734 SEMA4F ssemaphorin 4F protein-coding gene gene with protein product Approved 2p13.1 02p13.1 SEMAW m-Sema M SEMAM sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4F Semaphorins 736 1999-06-25 2016-01-14 2016-01-14 10505 ENSG00000135622 OTTHUMG00000129952 uc002sna.3 AF038652 NM_004263 "CCDS1955|CCDS62942|CCDS74529" O95754 10051670 MGI:1340055 RGD:3658 SEMA4F 603706 +HGNC:10735 SEMA4G semaphorin 4G protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "FLJ20590|KIAA1619" sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G "Immunoglobulin like domain containing|Semaphorins" "594|736" 1999-06-25 2016-01-14 2016-01-14 57715 ENSG00000095539 OTTHUMG00000018922 uc001krw.3 AB046839 XM_005270008 "CCDS7501|CCDS55724" Q9NTN9 MGI:1347047 RGD:1310436 SEMA4G +HGNC:10736 SEMA5A semaphorin 5A protein-coding gene gene with protein product Approved 5p15.31 05p15.31 semF SEMAF sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A Semaphorins 736 1999-06-25 2016-01-14 2016-10-05 9037 ENSG00000112902 OTTHUMG00000090501 uc003jek.3 U52840 XM_011514155 CCDS3875 Q13591 "8817451|9464278" MGI:107556 RGD:1308650 SEMA5A 609297 158394 +HGNC:10737 SEMA5B semaphorin 5B protein-coding gene gene with protein product Approved 3q21.1 03q21.1 "SemG|KIAA1445|FLJ10372" SEMAG sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B Semaphorins 736 1999-06-25 2016-01-14 2016-01-14 54437 ENSG00000082684 OTTHUMG00000140392 uc003efz.3 AB040878 NM_001031702 "CCDS35491|CCDS58848|CCDS74995" Q9P283 8817451 MGI:107555 RGD:1308914 SEMA5B 609298 +HGNC:10738 SEMA6A semaphorin 6A protein-coding gene gene with protein product Approved 5q23.1 05q23.1 "KIAA1368|SEMA6A1|SEMA|HT018" sema VIa SEMAQ sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A Semaphorins 736 1999-06-25 2016-01-14 2016-01-14 57556 ENSG00000092421 OTTHUMG00000162987 uc010jck.4 AB037789 NM_020796 "CCDS47256|CCDS75288" Q9H2E6 "9204478|10993894" MGI:1203727 RGD:1305493 SEMA6A 605885 +HGNC:51110 SEMA6A-AS1 SEMA6A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q23.1 05q23.1 2014-07-29 2014-07-29 101927233 ENSG00000248445 OTTHUMG00000162986 NR_109879 +HGNC:10739 SEMA6B semaphorin 6B protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "semaZ|SEMA-VIB|SEM-SEMA-Y" "Sema VIb|semaphorin Z|semaphorin VIB" SEMAN sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B Semaphorins 736 1999-06-25 2016-01-14 2016-01-14 10501 ENSG00000167680 OTTHUMG00000182011 uc010dud.3 AB022433 NM_032108 CCDS12131 Q9H3T3 9361278 MGI:1202889 RGD:69278 SEMA6B 608873 +HGNC:10740 SEMA6C semaphorin 6C protein-coding gene gene with protein product Approved 1q21.3 01q21.3 KIAA1869 m-Sema Y2 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C Semaphorins 736 1999-06-25 2016-01-14 2016-10-05 10500 ENSG00000143434 OTTHUMG00000012261 uc001ewv.4 AF339154 NM_030913 "CCDS984|CCDS53363|CCDS53364" Q9H3T2 12110693 MGI:1338032 RGD:3659 SEMA6C 609294 +HGNC:16770 SEMA6D semaphorin 6D protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "KIAA1479|FLJ11598" sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D Semaphorins 736 2004-09-17 2016-01-14 2016-01-14 80031 ENSG00000137872 OTTHUMG00000172110 uc001zvy.3 AF389430 NM_024966 "CCDS32224|CCDS32225|CCDS32226|CCDS32227|CCDS32228|CCDS32229" Q8NFY4 "12110693|14977921" MGI:2387661 RGD:1310910 SEMA6D 609295 +HGNC:10741 SEMA7A semaphorin 7A (John Milton Hagen blood group) protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "H-Sema-L|CD108" "John Milton Hagen blood group|H-Sema K1" SEMAL "sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A|sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A (JMH blood group)|semaphorin 7A, GPI membrane anchor (John Milton Hagen blood group)" "Blood group antigens|CD molecules|Immunoglobulin like domain containing|Semaphorins" "454|471|594|736" 1999-06-25 2016-01-14 2016-10-12 8482 ENSG00000138623 OTTHUMG00000139000 uc002axv.4 AF069493 NM_003612 "CCDS10262|CCDS53958|CCDS53959" O75326 9721204 MGI:1306826 RGD:1305192 LRG_818|http://www.lrg-sequence.org/LRG/LRG_818 SEMA7A 607961 CD108 +HGNC:10742 SEMG1 semenogelin I protein-coding gene gene with protein product Approved 20q13.12 20q13.12 CT103 "semen coagulating protein|cancer/testis antigen 103" SEMG 1991-09-13 2016-10-05 6406 ENSG00000124233 OTTHUMG00000032565 uc002xni.3 NM_003007 CCDS13345 P04279 "2912989|15563730" RGD:3790 SEMG1 182140 +HGNC:10743 SEMG2 semenogelin II protein-coding gene gene with protein product Approved 20q13.12 20q13.12 SGII Semenogelin 2 1992-12-02 2016-10-05 6407 ENSG00000124157 OTTHUMG00000032566 uc002xnk.4 NM_003008 CCDS13346 Q02383 "1517240|9523691" SEMG2 182141 +HGNC:10745 SEN2 senescence (cellular)-related 2 phenotype phenotype only Approved 1 01 1997-07-07 2003-10-13 6409 2300822 +HGNC:10746 SEN3 senescence (cellular)-related 3 phenotype phenotype only Approved X X 1997-07-07 2007-07-10 6410 1576706 +HGNC:10747 SEN6 senescence (cellular)-related 6 phenotype phenotype only Approved 6q26-q27 06q26-q27 1997-07-07 2014-01-29 6411 "8706800|20068294" +HGNC:10748 SEN6A senescence (cellular)-related 6A phenotype phenotype only Approved 6q14-q21 06q14-q21 1997-07-07 2011-02-10 6412 8570202 +HGNC:10749 SEN6B senescence (cellular)-related 6B phenotype phenotype only Approved 6q21-q22 06q21-q22 1997-07-07 2011-02-10 6413 7520270 +HGNC:44177 SENCR smooth muscle and endothelial cell enriched migration/differentiation-associated long non-coding RNA non-coding RNA RNA, long non-coding Approved 11q24.3 11q24.3 FLI1-AS1 "FLI1 antisense RNA 1 (non-protein coding)|FLI1 antisense RNA 1" Long non-coding RNAs 788 2012-06-30 2013-11-25 2013-11-25 2014-03-03 100507392 ENSG00000254703 OTTHUMG00000165793 BC039676 NR_038908 24578380 615815 +HGNC:17927 SENP1 SUMO1/sentrin specific peptidase 1 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 SUMO1/sentrin specific protease 1 SUMO specific peptidases 984 2004-02-20 2005-08-17 2016-08-08 29843 ENSG00000079387 OTTHUMG00000169896 uc001rqx.5 AF149770 NM_014554 CCDS44868 Q9P0U3 "10652325|14563852" MGI:2445054 RGD:1310275 SENP1 612157 C48.002 objectId:2414 3.4.22.68 +HGNC:23116 SENP2 SUMO1/sentrin/SMT3 specific peptidase 2 protein-coding gene gene with protein product Approved 3q27.2 03q27.2 "SMT3IP2|KIAA1331|DKFZp762A2316|AXAM2" SUMO1/sentrin/SMT3 specific protease 2 SUMO specific peptidases 984 2004-03-11 2005-08-17 2016-10-05 59343 ENSG00000163904 OTTHUMG00000156658 uc003fpn.4 AF151697 NM_021627 CCDS33902 Q9HC62 "11896061|11489887" MGI:1923076 RGD:708378 SENP2 608261 C48.007 3.4.22.68 +HGNC:17862 SENP3 SUMO1/sentrin/SMT3 specific peptidase 3 protein-coding gene gene with protein product Approved 17p13 17p13 "DKFZP586K0919|SSP3|DKFZp762A152|SMT3IP1|Ulp1" SUMO1/sentrin/SMT3 specific protease 3 "SUMO specific peptidases|5FMC ribosome biogenesis complex" "984|1301" 2004-03-11 2005-08-17 2016-07-01 26168 ENSG00000161956 OTTHUMG00000178333 uc032esp.2 AK000923 NM_015670 CCDS73958 Q9H4L4 "10806345|11230166" MGI:2158736 RGD:1312040 SENP3 612844 C48.003 3.4.22.68 +HGNC:49182 SENP3-EIF4A1 SENP3-EIF4A1 readthrough (NMD candidate) other readthrough Approved 17p13.1 17p13.1 2013-09-25 2013-09-25 2015-01-30 100533955 ENSG00000277957 OTTHUMG00000178334 NR_037926 +HGNC:28407 SENP5 SUMO1/sentrin specific peptidase 5 protein-coding gene gene with protein product Approved 3q29 03q29 MGC27076 SUMO1/sentrin specific protease 5 SUMO specific peptidases 984 2004-02-20 2005-08-17 2016-08-08 205564 ENSG00000119231 OTTHUMG00000155527 uc003fwz.5 BC030705 NM_152699 "CCDS3322|CCDS77876" Q96HI0 16738315 MGI:2443596 RGD:1304604 SENP5 612845 C48.008 3.4.22.68 +HGNC:20944 SENP6 SUMO1/sentrin specific peptidase 6 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "SUSP1|KIAA0797" SUMO1/sentrin specific protease 6 SUMO specific peptidases 984 2004-03-11 2005-08-17 2016-08-08 26054 ENSG00000112701 OTTHUMG00000015060 uc003pie.5 NM_015571 "CCDS43483|CCDS47454|CCDS78158" Q9GZR1 MGI:1922075 RGD:1304565 SENP6 605003 C48.004 objectId:2415 3.4.22.68 +HGNC:30402 SENP7 SUMO1/sentrin specific peptidase 7 protein-coding gene gene with protein product Approved 3q12.3 03q12.3 SUMO1/sentrin specific protease 7 SUMO specific peptidases 984 2004-02-20 2005-08-17 2016-10-05 57337 ENSG00000138468 OTTHUMG00000149927 uc003dut.5 NM_020654 "CCDS2941|CCDS43121|CCDS63704|CCDS63705|CCDS63706" Q9BQF6 "11214970|11230166" MGI:1913565 RGD:1305510 SENP7 612846 C48.009 objectId:2416 +HGNC:22992 SENP8 SUMO/sentrin peptidase family member, NEDD8 specific protein-coding gene gene with protein product Approved 15q23 15q23 "NEDP1|DEN1|HsT17512" "NEDD8-specific protease 1|sentrin/SUMO-specific protease SENP8|deneddylase 1" PRSC2 "protease, cysteine, 2 (NEDD8 specific)|SUMO/sentrin specific protease family member 8|SUMO/sentrin specific peptidase family member 8" SUMO specific peptidases 984 2003-09-02 2004-01-30 2015-06-12 2016-10-05 123228 ENSG00000166192 OTTHUMG00000133441 uc021spq.2 BC031411 NM_145204 CCDS10240 Q96LD8 "12730221|12759362" MGI:1918849 RGD:1309955 SENP8 608659 objectId:2417 +HGNC:19685 SEPHS1 selenophosphate synthetase 1 protein-coding gene gene with protein product Approved 10p13 10p13 "SPS|SPS1" selenide, water dikinase 2003-11-06 2016-10-05 22929 ENSG00000086475 OTTHUMG00000017696 uc001imk.4 BC000941 NM_012247 "CCDS7098|CCDS55702|CCDS55703" P49903 7665581 MGI:1923580 RGD:1311182 SEPHS1 600902 +HGNC:42161 SEPHS1P1 selenophosphate synthetase 1 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 2011-06-06 2014-11-18 168474 ENSG00000182722 OTTHUMG00000156602 NG_029998 PGOHUM00000232829 +HGNC:42162 SEPHS1P2 selenophosphate synthetase 1 pseudogene 2 pseudogene pseudogene Approved 15q26.1 15q26.1 2011-06-06 2014-11-18 100420292 NG_025354 PGOHUM00000246933 +HGNC:42163 SEPHS1P3 selenophosphate synthetase 1 pseudogene 3 pseudogene pseudogene Approved 5q35.2 05q35.2 2011-06-06 2014-11-18 100420189 NG_024643 +HGNC:42169 SEPHS1P4 selenophosphate synthetase 1 pseudogene 4 pseudogene pseudogene Approved Xq13.2 Xq13.2 2011-06-06 2014-11-18 389873 ENSG00000230146 OTTHUMG00000021836 NG_022673 SEPHS1P4 PGOHUM00000241847 +HGNC:42168 SEPHS1P6 selenophosphate synthetase 1 pseudogene 6 pseudogene pseudogene Approved 2q33.1 02q33.1 2011-06-06 2014-11-18 729399 ENSG00000213938 OTTHUMG00000154492 NG_021597 PGOHUM00000241057 +HGNC:42167 SEPHS1P7 selenophosphate synthetase 1 pseudogene 7 pseudogene pseudogene Approved 2q14.1 02q14.1 2011-06-06 2014-11-19 391428 ENSG00000231926 OTTHUMG00000153272 NG_021519 PGOHUM00000240268 +HGNC:19686 SEPHS2 selenophosphate synthetase 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "SPS2|SPS2b" Selenoproteins 890 2003-12-19 2014-11-19 22928 ENSG00000179918 OTTHUMG00000176988 uc284nvr.1 BC002381 NM_012248 CCDS42150 Q99611 10608886 MGI:108388 RGD:1308827 SEPHS2 606218 +HGNC:42165 SEPHS2P1 selenophosphate synthetase 2 pseudogene 1 pseudogene pseudogene Approved 5p15.2 05p15.2 SEPHS1P5 selenophosphate synthetase 1 pseudogene 5 2011-06-06 2013-08-19 2013-08-19 2014-11-18 100420190 ENSG00000250247 OTTHUMG00000161763 NG_024654 PGOHUM00000235507 +HGNC:30605 SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "SLA/LP|SLA" soluble liver antigen/liver pancreas antigen 2007-05-01 2016-04-25 51091 ENSG00000109618 OTTHUMG00000128563 uc003grg.4 AJ238617 NM_016955 CCDS3432 Q9HD40 "16230358|10931155|17142313|17194211" MGI:1098791 RGD:1589491 SEPSECS 613009 251270 +HGNC:27737 SEPSECS-AS1 SEPSECS antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4p15.2 04p15.2 2013-10-09 2013-10-09 285540 ENSG00000281501 OTTHUMG00000189520 AK095450 NR_037934 +HGNC:2879 SEPT1 septin 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 PNUTL3 DIFF6 Septins 732 1996-04-17 2001-09-10 2016-04-25 1731 ENSG00000180096 OTTHUMG00000176984 uc002dxy.5 AF308288 NM_052838 CCDS10678 Q8WYJ6 8697812 MGI:1858916 RGD:1307216 SEPT1 612897 3.1.5.1 +HGNC:7729 SEPT2 septin 2 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "KIAA0158|hNedd5|Pnutl3" "DIFF6|NEDD5" neural precursor cell expressed, developmentally down-regulated 5 Septins 732 1994-01-21 2005-01-12 2005-01-11 2014-11-18 4735 ENSG00000168385 OTTHUMG00000133394 uc002wbd.5 D28540 NM_006155 "CCDS2548|CCDS63195|CCDS74682" Q15019 8697812 MGI:97298 RGD:620056 SEPT2 601506 +HGNC:40017 SEPT2P1 septin 2 pseudogene 1 pseudogene pseudogene Approved 1p21.1 01p21.1 2011-05-03 2011-05-03 100873333 ENSG00000227850 OTTHUMG00000011007 NG_032370 PGOHUM00000244828 +HGNC:10750 SEPT3 septin 3 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 SEP3 Septins 732 2000-07-31 2014-11-19 55964 ENSG00000100167 OTTHUMG00000030494 uc003bbr.5 AF285107 NM_145734 "CCDS14026|CCDS14027" Q9UH03 MGI:1345148 RGD:621745 SEPT3 608314 +HGNC:9165 SEPT4 septin 4 protein-coding gene gene with protein product Approved 17q22 17q22 "H5|CE5B3|hucep-7|ARTS|hCDCREL-2|MART" "bradeoin|septin-M" PNUTL2 peanut-like 2 (Drosophila) Septins 732 1998-07-15 2005-01-12 2005-01-11 2014-11-19 5414 ENSG00000108387 OTTHUMG00000179243 uc010wnx.3 AF073312 NM_080417 "CCDS11609|CCDS11610|CCDS45743|CCDS56041|CCDS58581|CCDS58582" O43236 9889007 MGI:1270156 RGD:1308781 SEPT4 603696 +HGNC:51345 SEPT4-AS1 SEPT4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q22 17q22 2014-10-10 2014-10-10 101927688 ENSG00000264672 OTTHUMG00000179242 "CK429595|BX092197|BQ072540" NR_110810 +HGNC:9164 SEPT5 septin 5 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "HCDCREL-1|H5" PNUTL1 peanut-like 1 (Drosophila) Septins 732 1998-07-15 2005-01-12 2005-01-11 2016-10-05 5413 ENSG00000184702 OTTHUMG00000150399 uc002zpv.3 Y11593 NM_002688 "CCDS13764|CCDS56224" Q99719 "9385360|9611266" MGI:1195461 RGD:621763 SEPT5 602724 +HGNC:15848 SEPT6 septin 6 protein-coding gene gene with protein product Approved Xq24 Xq24 "KIAA0128|SEP2|SEPT2|MGC16619|MGC20339" Septins 732 2004-01-29 2014-11-19 23157 ENSG00000125354 OTTHUMG00000022280 uc004ert.4 D50918 NM_145802 "CCDS14583|CCDS14584|CCDS14585" Q14141 "8590280|10744683" MGI:1888939 RGD:1585082 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SEPT6 SEPT6 300683 +HGNC:1717 SEPT7 septin 7 protein-coding gene gene with protein product Approved 7p14.2 07p14.2 "CDC3|SEPT7A" CDC10 CDC10 cell division cycle 10 homolog (S. cerevisiae) Septins 732 1995-02-08 2005-01-12 2005-01-11 2015-08-25 989 ENSG00000122545 OTTHUMG00000155063 uc064ctx.2 S72008 NM_001788 CCDS75582 Q16181 8037772 MGI:1335094 RGD:620469 SEPT7 603151 +HGNC:51153 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 7p14.2 07p14.2 2014-07-30 2014-07-30 101928545 ENSG00000228878 OTTHUMG00000155061 NR_120511 +HGNC:19926 SEPT7P1 septin 7 pseudogene 1 pseudogene pseudogene Approved 14q13.2 14q13.2 CDC10P CDC10 cell division cycle 10 homolog (S. cerevisiae) pseudogene 2003-01-13 2010-03-24 2010-03-24 2014-11-18 317774 ENSG00000259090 OTTHUMG00000171026 NG_002472 +HGNC:32339 SEPT7P2 septin 7 pseudogene 2 pseudogene pseudogene Approved 7p12.3 07p12.3 DKFZp313J1114 "SEPT7B|SEPT13" "septin 7B|septin 13" 2005-10-13 2010-03-24 2010-03-24 2014-11-19 641977 ENSG00000214765 OTTHUMG00000155423 AL133216 NR_024271 15915442 611563 +HGNC:38038 SEPT7P3 septin 7 pseudogene 3 pseudogene pseudogene Approved 7p14.2 07p14.2 2010-03-24 2014-11-19 646913 ENSG00000226102 OTTHUMG00000155062 NG_008036 +HGNC:38039 SEPT7P4 septin 7 pseudogene 4 pseudogene pseudogene Approved 7q11.21 07q11.21 2010-03-24 2014-11-19 100418715 ENSG00000240651 OTTHUMG00000156262 NG_022539 PGOHUM00000232781 +HGNC:38041 SEPT7P5 septin 7 pseudogene 5 pseudogene pseudogene Approved 7q11.21 07q11.21 2010-03-25 2014-11-19 100418718 ENSG00000164740 OTTHUMG00000156390 NG_022560 PGOHUM00000233322 +HGNC:38042 SEPT7P6 septin 7 pseudogene 6 pseudogene pseudogene Approved 7q36.1 07q36.1 2010-03-25 2014-11-19 100418720 ENSG00000241007 OTTHUMG00000157523 NG_022577 PGOHUM00000233652 +HGNC:38043 SEPT7P7 septin 7 pseudogene 7 pseudogene pseudogene Approved 9q22.33 09q22.33 2010-03-25 2014-11-19 100130564 ENSG00000229897 OTTHUMG00000020344 NG_016426 PGOHUM00000236732 +HGNC:38044 SEPT7P8 septin 7 pseudogene 8 pseudogene pseudogene Approved 19q13.42 19q13.42 2010-03-25 2014-11-19 100418735 ENSG00000229000 OTTHUMG00000060777 NG_021752 PGOHUM00000234421 +HGNC:30810 SEPT7P9 septin 7 pseudogene 9 pseudogene pseudogene Approved 10p11.1 10p11.1 bA291L22.2 "CDC10L|SEPT7L" "CDC10 cell division cycle 10 homolog (S. cerevisiae) like|CDC10 cell division cycle 10 homolog (S. cerevisiae)-like|septin 7-like" 2004-04-29 2013-04-02 2013-04-02 2016-10-05 285961 ENSG00000120555 OTTHUMG00000017994 NR_027269 +HGNC:16511 SEPT8 septin 8 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "KIAA0202|SEP2" Septins 732 2004-01-29 2016-10-05 23176 ENSG00000164402 OTTHUMG00000059735 uc003kxs.2 AF179995 XM_034872 "CCDS43358|CCDS43359|CCDS43360|CCDS47262|CCDS75298" Q92599 "9039502|9149945" MGI:894310 RGD:1308449 SEPT8 608418 +HGNC:7323 SEPT9 septin 9 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "MSF1|KIAA0991|PNUTL4|AF17q25|SeptD1" Ov/Br septin MSF MLL septin-like fusion Septins 732 2000-02-28 2005-01-12 2005-01-11 2016-10-12 10801 ENSG00000184640 OTTHUMG00000177327 uc002jts.5 AB023208 NM_006640 "CCDS45790|CCDS45791|CCDS45792|CCDS45793|CCDS45794|CCDS45795|CCDS74166|CCDS77122" Q9UHD8 "10339604|10485469" MGI:1858222 RGD:708523 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_370|http://www.lrg-sequence.org/LRG/LRG_370" SEPT9 604061 117605 +HGNC:14349 SEPT10 septin 10 protein-coding gene gene with protein product Approved 2q13 02q13 FLJ11619 sept1-like Septins 732 2003-05-12 2015-09-02 151011 ENSG00000186522 OTTHUMG00000154957 uc002tex.5 AF146760 NM_144710 "CCDS42726|CCDS46383|CCDS82496|CCDS82497" Q9P0V9 12711328 MGI:1918110 RGD:1359307 SEPT10 611737 +HGNC:40018 SEPT10P1 septin 10 pseudogene 1 pseudogene pseudogene Approved 8q12.1 08q12.1 2011-05-03 2011-05-03 389662 ENSG00000253541 OTTHUMG00000164411 NG_022390 PGOHUM00000249350 +HGNC:25589 SEPT11 septin 11 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 FLJ10849 Septins 732 2004-06-22 2014-11-19 55752 ENSG00000138758 OTTHUMG00000160854 uc003hkj.4 AK001711 NM_018243 "CCDS34018|CCDS77931" Q9NVA2 "14999297|15140406" MGI:1277214 RGD:1307405 SEPT11 612887 +HGNC:26348 SEPT12 septin 12 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ25410 Septins 732 2006-11-13 2015-08-25 124404 ENSG00000140623 OTTHUMG00000129481 uc002cxq.4 AK058139 NM_144605 "CCDS10522|CCDS53987" Q8IYM1 "14611653|15915442" MGI:1918339 RGD:1565511 SEPT12 611562 408642 +HGNC:33280 SEPT14 septin 14 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 FLJ44060 Septins 732 2007-05-01 2014-11-19 346288 ENSG00000154997 OTTHUMG00000129341 uc003tqz.2 AK126048 NM_207366 CCDS5519 Q6ZU15 MGI:1921472 RGD:1596186 SEPT14 612140 369815 +HGNC:51685 SEPT14P1 septin 14 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 2015-05-08 2015-05-08 106480340 ENSG00000231523 OTTHUMG00000156275 NG_044583 PGOHUM00000302217 +HGNC:51686 SEPT14P2 septin 14 pseudogene 2 pseudogene pseudogene Approved 2q37.3 02q37.3 2015-05-08 2015-05-08 107105263 ENSG00000244528 OTTHUMG00000152146 NG_046580 PGOHUM00000306038 +HGNC:51687 SEPT14P3 septin 14 pseudogene 3 pseudogene pseudogene Approved 3q29 03q29 2015-05-08 2015-05-08 107105265 ENSG00000226008 OTTHUMG00000155430 NG_046583 PGOHUM00000299721 +HGNC:51688 SEPT14P4 septin 14 pseudogene 4 pseudogene pseudogene Approved 4q26 04q26 2015-05-08 2015-05-08 107105266 ENSG00000251155 OTTHUMG00000161210 NG_046584 PGOHUM00000300350 +HGNC:51689 SEPT14P5 septin 14 pseudogene 5 pseudogene pseudogene Approved 5q35.3 05q35.3 2015-05-08 2015-05-08 107105276 NG_046594 PGOHUM00000306068 +HGNC:51690 SEPT14P6 septin 14 pseudogene 6 pseudogene pseudogene Approved 6p25.3 06p25.3 2015-05-08 2015-05-08 107105278 NG_046597 PGOHUM00000306069 +HGNC:51691 SEPT14P7 septin 14 pseudogene 7 pseudogene pseudogene Approved 7p12.3 07p12.3 2015-05-08 2015-05-08 107105280 NG_046605 PGOHUM00000302616 +HGNC:51692 SEPT14P8 septin 14 pseudogene 8 pseudogene pseudogene Approved 8p23.3 08p23.3 2015-05-08 2015-05-08 106480341 ENSG00000255464 OTTHUMG00000160541 NG_044593 PGOHUM00000306138 +HGNC:51697 SEPT14P10 septin 14 pseudogene 10 pseudogene pseudogene Approved 10p11.1 10p11.1 2015-05-08 2015-05-08 107105352 NG_046611 PGOHUM00000305860 +HGNC:51698 SEPT14P11 septin 14 pseudogene 11 pseudogene pseudogene Approved 11p15.5 11p15.5 2015-05-08 2015-05-08 107105353 NG_046612 PGOHUM00000305863 +HGNC:51699 SEPT14P12 septin 14 pseudogene 12 pseudogene pseudogene Approved 1q31.3 01q31.3 2015-05-08 2015-05-08 106480343 ENSG00000235748 OTTHUMG00000057657 NG_045908 PGOHUM00000296004 +HGNC:51700 SEPT14P13 septin 14 pseudogene 13 pseudogene pseudogene Approved 1p36.33 01p36.33 2015-05-08 2015-05-08 106481733 ENSG00000224813 OTTHUMG00000002857 NG_043478 PGOHUM00000305952 +HGNC:51701 SEPT14P14 septin 14 pseudogene 14 pseudogene pseudogene Approved 1p36.33 01p36.33 2015-05-08 2015-05-08 107105354 NG_046613 PGOHUM00000305955 +HGNC:51702 SEPT14P15 septin 14 pseudogene 15 pseudogene pseudogene Approved 1q42.11 01q42.11 2015-05-08 2015-05-08 107126282 NG_046617 PGOHUM00000305965 +HGNC:51704 SEPT14P16 septin 14 pseudogene 16 pseudogene pseudogene Approved 16q24.3 16q24.3 2015-05-08 2015-05-08 107126283 NG_046618 PGOHUM00000305929 +HGNC:51703 SEPT14P17 septin 14 pseudogene 17 pseudogene pseudogene Approved 1q42.13 01q42.13 2015-05-08 2015-05-08 106480344 ENSG00000274886 OTTHUMG00000187550 NG_045912 PGOHUM00000296803 +HGNC:51705 SEPT14P18 septin 14 pseudogene 18 pseudogene pseudogene Approved 1p36.33 01p36.33 2015-05-08 2015-05-08 107126284 NG_046619 PGOHUM00000305948 +HGNC:51707 SEPT14P19 septin 14 pseudogene 19 pseudogene pseudogene Approved 19p13.3 19p13.3 2015-05-08 2015-05-08 107105271 ENSG00000281379 OTTHUMG00000180460 NG_046590 +HGNC:51706 SEPT14P20 septin 14 pseudogene 20 pseudogene pseudogene Approved 20q13.33 20q13.33 2015-05-08 2015-05-08 107126285 NG_046620 PGOHUM00000297154 +HGNC:51712 SEPT14P21 septin 14 pseudogene 21 pseudogene pseudogene Approved 1q43 01q43 2015-05-18 2015-05-18 107075107 ENSG00000282831 OTTHUMG00000191545 NG_046555 +HGNC:51708 SEPT14P22 septin 14 pseudogene 22 pseudogene pseudogene Approved Yq11.23 Yq11.23 2015-05-08 2015-05-08 107126286 NG_046629 PGOHUM00000306237 +HGNC:51709 SEPT14P23 septin 14 pseudogene 23 pseudogene pseudogene Approved Yq11.23 Yq11.23 2015-05-08 2015-05-08 107126290 NG_046625 PGOHUM00000306206 +HGNC:51710 SEPT14P24 septin 14 pseudogene 24 pseudogene pseudogene Approved 7p11.2 07p11.2 2015-05-08 2015-05-08 106480345 ENSG00000231299 OTTHUMG00000156225 NG_044627 PGOHUM00000302158 +HGNC:21061 SERAC1 serine active site containing 1 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 FLJ14917 2003-05-12 2015-08-25 84947 ENSG00000122335 OTTHUMG00000015905 uc003qrc.3 BC001705 NM_032861 CCDS5255 Q96JX3 MGI:2447813 RGD:1565064 SERAC1 614725 356228 +HGNC:17860 SERBP1 SERPINE1 mRNA binding protein 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "PAI-RBP1|DKFZP564M2423|CGI-55|HABP4L|PAIRBP1|CHD3IP" 2005-09-15 2016-10-05 26135 ENSG00000142864 OTTHUMG00000009372 uc001ddy.4 AF151813 NM_001018067 "CCDS639|CCDS30746|CCDS30747|CCDS30748" Q8NC51 "11001948|10810093|18440126|17698176" MGI:1914120 RGD:619907 SERBP1 607378 +HGNC:32247 SERBP1P1 SERPINE1 mRNA binding protein 1 pseudogene 1 pseudogene pseudogene Approved Xq13.1 Xq13.1 SERBP1P SERPINE1 mRNA binding protein 1 pseudogene 2005-09-15 2009-12-17 2009-12-17 2012-11-21 389866 ENSG00000213740 OTTHUMG00000021750 NG_005103 PGOHUM00000241829 +HGNC:23967 SERBP1P2 SERPINE1 mRNA binding protein 1 pseudogene 2 pseudogene pseudogene Approved Yp11.2 Yp11.2 PAI 1 mRNA binding protein pseudogene 2009-12-17 2014-11-19 359996 ENSG00000225878 OTTHUMG00000036215 NG_002917 12815422 PGOHUM00000233670 +HGNC:44630 SERBP1P3 SERPINE1 mRNA binding protein 1 pseudogene 3 pseudogene pseudogene Approved 3p21.1 03p21.1 2012-11-23 2012-11-23 553148 ENSG00000242142 OTTHUMG00000159077 NG_005109 PGOHUM00000237630 +HGNC:44631 SERBP1P4 SERPINE1 mRNA binding protein 1 pseudogene 4 pseudogene pseudogene Approved Xq21.31 Xq21.31 2012-11-23 2012-11-23 100132591 ENSG00000230275 OTTHUMG00000021962 NG_022620 PGOHUM00000241442 +HGNC:44632 SERBP1P5 SERPINE1 mRNA binding protein 1 pseudogene 5 pseudogene pseudogene Approved 4q21.21 04q21.21 2012-11-23 2012-11-23 442112 ENSG00000249565 OTTHUMG00000160901 NG_005107 PGOHUM00000245605 +HGNC:44635 SERBP1P6 SERPINE1 mRNA binding protein 1 pseudogene 6 pseudogene pseudogene Approved 5p13.1 05p13.1 2012-11-23 2012-11-23 2014-02-12 100420450 ENSG00000248873 OTTHUMG00000162137 NG_024590 PGOHUM00000235205 +HGNC:10755 SERF1A small EDRK-rich factor 1A protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "H4F5|4F5|FAM2A|SMAM1" "SMA modifier 1|spinal muscular atrophy-related gene H4F5" SERF1 small EDRK-rich factor 1A (telomeric) 1999-06-01 2016-06-06 2016-10-05 8293 ENSG00000172058 OTTHUMG00000162419 uc003mqa.4 AF073518 NM_021967 "CCDS47228|CCDS47229" O75920 9731538 MGI:1337114 SERF1A 603011 +HGNC:44061 SERF1AP1 small EDRK-rich factor 1A pseudogene 1 pseudogene pseudogene Approved 4q28.3 04q28.3 small EDRK-rich factor 1A (telomeric) pseudogene 1 2012-05-30 2016-06-06 2016-06-06 100131921 ENSG00000250813 OTTHUMG00000161250 NG_030215 PGOHUM00000245705 +HGNC:10756 SERF1B small EDRK-rich factor 1B protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "FAM2B|H4F5C" small EDRK-rich factor 1B (centromeric) 2000-09-01 2016-06-06 2016-10-05 728492 ENSG00000205572 OTTHUMG00000162391 uc003jxz.4 NM_022978 "CCDS43326|CCDS54866" O75920 MGI:1337114 RGD:1565105 SERF1B +HGNC:10757 SERF2 small EDRK-rich factor 2 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "H4F5rel|4F5REL|FAM2C|HsT17089" 1999-06-01 2016-10-05 10169 ENSG00000140264 OTTHUMG00000059935 uc001zsz.5 AF073298 NM_005770 "CCDS32218|CCDS55963|CCDS55964|CCDS55965" P84101 9731538 MGI:1337041 RGD:1588368 SERF2 605054 +HGNC:17499 SERGEF secretion regulating guanine nucleotide exchange factor protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "DelGEF|Gnefr" 2006-02-22 2016-10-05 26297 ENSG00000129158 OTTHUMG00000166420 uc001mnm.5 AJ243950 NM_012139 CCDS7828 Q9UGK8 "10571079|12459492" MGI:1351630 RGD:1563497 SERGEF 606051 +HGNC:14408 SERHL serine hydrolase-like (pseudogene) pseudogene pseudogene Approved 22q13.2 22q13.2 "HS126B42|BK126B4.1|dJ222E13.1" kraken-like serine hydrolase-like 2001-02-08 2014-10-07 2014-11-19 94009 ENSG00000172250 OTTHUMG00000150888 uc011apl.3 AL365513 NM_170694 Q9NQF3 11352564 MGI:1890404 SERHL 607979 S33.012 +HGNC:29446 SERHL2 serine hydrolase-like 2 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 2005-04-05 2016-10-05 253190 ENSG00000183569 OTTHUMG00000150892 uc003bcr.5 NM_014509 "CCDS14037|CCDS63498" Q9H4I8 MGI:1890404 RGD:1563386 SERHL2 +HGNC:13464 SERINC1 serine incorporator 1 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "TMS-2|TDE1L|KIAA1253" TDE2 tumor differentially expressed 2 2003-08-21 2005-10-14 2005-10-14 2016-10-05 57515 ENSG00000111897 OTTHUMG00000015487 uc003pyy.2 AF087902 NM_020755 CCDS5125 Q9NRX5 10637174 MGI:1926228 RGD:727843 SERINC1 614548 +HGNC:23231 SERINC2 serine incorporator 2 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "FKSG84|PRO0899|TDE2" TDE2L tumor differentially expressed 2-like 2003-10-23 2005-11-01 2005-11-01 2016-10-05 347735 ENSG00000168528 OTTHUMG00000003796 uc001bst.4 AY094595 NM_018565 "CCDS30662|CCDS55583|CCDS55584|CCDS55585" Q96SA4 12949800 MGI:1919132 RGD:1311396 SERINC2 614549 +HGNC:11699 SERINC3 serine incorporator 3 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "DIFF33|TDE|SBBI99|TMS-1|AIGP1" TDE1 tumor differentially expressed 1 1999-12-07 2005-11-15 2005-11-15 2014-11-19 10955 ENSG00000132824 OTTHUMG00000033087 uc002xme.4 U49188 NM_006811 CCDS13333 Q13530 10559794 MGI:1349457 RGD:1308390 SERINC3 607165 +HGNC:32237 SERINC4 serine incorporator 4 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 FLJ40363 2005-09-06 2015-08-25 619189 ENSG00000184716 OTTHUMG00000060144 uc031qrp.2 DQ103711 NM_001258031 CCDS58360 A6NH21 MGI:2441842 RGD:1566077 SERINC4 614550 +HGNC:18825 SERINC5 serine incorporator 5 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 TPO1 C5orf12 chromosome 5 open reading frame 12 2002-07-22 2005-10-14 2005-10-14 2014-11-19 256987 ENSG00000164300 OTTHUMG00000162563 uc011ctj.2 AF498273 NM_178276 "CCDS54874|CCDS83009" Q86VE9 12688535 MGI:2444223 RGD:621571 SERINC5 614551 +HGNC:10759 SERP1 stress associated endoplasmic reticulum protein 1 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "RAMP4|FLJ43424" ribosome associated membrane protein 4 1988-01-18 2016-08-09 2016-08-09 27230 ENSG00000120742 OTTHUMG00000159769 uc062ozv.1 AK125413 NM_014445 CCDS3150 Q9Y6X1 "10601334|11230166" MGI:92638 RGD:620790 SERP1 +HGNC:20607 SERP2 stress associated endoplasmic reticulum protein family member 2 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 bA269C23.1 C13orf21 chromosome 13 open reading frame 21 2004-04-16 2007-12-07 2016-08-09 2016-08-09 387923 ENSG00000151778 OTTHUMG00000016833 uc001uzj.3 BC029067 NM_001010897 CCDS31965 Q8N6R1 MGI:1919911 RGD:1566076 SERP2 +HGNC:8941 SERPINA1 serpin family A member 1 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "AAT|A1A|PI1|alpha-1-antitrypsin|A1AT|alpha1AT" protease inhibitor 1 (anti-elastase), alpha-1-antitrypsin PI "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1" Serpin peptidase inhibitors 739 1986-01-01 2016-04-06 2016-10-05 5265 ENSG00000197249 OTTHUMG00000150355 uc010auy.3 X01683 NM_001002235 CCDS9925 P01009 24172014 "MGI:891967|MGI:891968|MGI:891969|MGI:891970|MGI:891971" RGD:3326 SERPINA1 107400 118602 I04.001 +HGNC:8985 SERPINA2 serpin family A member 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "ATR|ARGS" protease inhibitor 1 (alpha-1-antitrypsin)-like "PIL|SERPINA2P" "serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2, pseudogene|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 2 (gene/pseudogene)" Serpin peptidase inhibitors 739 2001-06-22 2014-02-18 2016-04-06 2016-04-06 390502 ENSG00000258597 OTTHUMG00000171347 JX680599 NM_006220 P20848 "15014966|23826168|24172014" SERPINA2 107410 PGOHUM00000258748 I04.952 +HGNC:16 SERPINA3 serpin family A member 3 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 ACT AACT "alpha-1-antichymotrypsin|serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3" Serpin peptidase inhibitors 739 2001-06-22 2016-04-06 2016-10-04 12 ENSG00000196136 OTTHUMG00000029851 uc001yds.4 K01500 NM_001085 CCDS32150 P01011 "3260956|24172014" "MGI:102848|MGI:105045|MGI:105046|MGI:1921319|MGI:2182835|MGI:2182838|MGI:2182841|MGI:2182843|MGI:98377|MGI:98378" RGD:6502633 SERPINA3 107280 200946 I04.002 +HGNC:8948 SERPINA4 serpin family A member 4 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "KST|KAL|KLST|kallistatin" PI4 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 4|sserpin family A member 4" Serpin peptidase inhibitors 739 1994-05-11 2016-04-12 2016-04-12 5267 ENSG00000100665 OTTHUMG00000170859 uc001ydk.5 L19684 NM_006215 CCDS9927 P29622 "8227002|24172014" RGD:708581 SERPINA4 147935 I04.003 +HGNC:8723 SERPINA5 serpin family A member 5 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "PAI3|PROCI" "PLANH3|PCI" "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 5" Serpin peptidase inhibitors 739 1992-10-02 2016-04-06 2016-10-05 5104 ENSG00000188488 OTTHUMG00000170860 uc059eta.1 M68516 NM_000624 CCDS9928 P05154 "1714450|8381582|24172014" MGI:107817 RGD:619817 SERPINA5 601841 I04.004 +HGNC:1540 SERPINA6 serpin family A member 6 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "corticosteroid binding globulin|transcortin" CBG "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6" Serpin peptidase inhibitors 739 1991-08-08 2016-04-06 2016-04-06 866 ENSG00000170099 OTTHUMG00000171346 uc001ycv.4 J02943 NM_001756 CCDS9924 P08185 "3299377|7912884|24172014" MGI:88278 RGD:1595901 SERPINA6 122500 201291 I04.954 +HGNC:11583 SERPINA7 serpin family A member 7 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "thyroxin-binding globulin|thyroxine-binding globulin|alpha-1 antiproteinase, antitrypsin" TBG "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7" Serpin peptidase inhibitors 739 1986-01-01 2016-04-06 2016-10-05 6906 ENSG00000123561 OTTHUMG00000022144 uc004eme.3 M14091 NM_000354 CCDS14518 P05543 24172014 MGI:3041197 RGD:619833 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SERPINA7 SERPINA7 314200 212874 I04.955 +HGNC:44398 SERPINA7P1 serpin family A member 7 pseudogene 1 pseudogene pseudogene Approved Xq22.3 Xq22.3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7 pseudogene 1 2014-02-14 2016-04-06 2016-04-06 100422644 ENSG00000227657 OTTHUMG00000022149 NG_026747 24172014 PGOHUM00000241493 +HGNC:15995 SERPINA9 serpin family A member 9 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "CENTERIN|SERPINA11b|GCET1" "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9" Serpin peptidase inhibitors 739 2001-06-27 2016-04-06 2016-10-05 327657 ENSG00000170054 OTTHUMG00000167710 uc001ydf.4 AY185497 NM_175739 "CCDS41982|CCDS41983|CCDS61542" Q86WD7 24172014 MGI:1919157 RGD:1304789 SERPINA9 615677 I04.082 +HGNC:15996 SERPINA10 serpin family A member 10 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "PZI|ZPI" "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10" Serpin peptidase inhibitors 739 2001-06-27 2016-04-06 2016-04-06 51156 ENSG00000140093 OTTHUMG00000171345 uc001ycu.6 AF181467 NM_016186 CCDS9923 Q9UK55 "10460162|9689066|24172014" MGI:2667725 RGD:621220 SERPINA10 605271 462050 I04.005 +HGNC:19193 SERPINA11 serpin family A member 11 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11" Serpin peptidase inhibitors 739 2004-05-21 2016-04-06 2016-04-06 256394 ENSG00000186910 OTTHUMG00000171348 uc001ydd.2 BX248259 NM_001080451 CCDS32149 Q86U17 "15014966|24172014" MGI:2685741 RGD:1359239 SERPINA11 +HGNC:18359 SERPINA12 serpin family A member 12 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "OL-64|Vaspin" "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12" Serpin peptidase inhibitors 739 2004-05-21 2016-04-06 2016-04-06 145264 ENSG00000165953 OTTHUMG00000171349 uc001ydj.3 AY177692 NM_173850 CCDS9926 Q8IW75 24172014 MGI:1915304 RGD:708485 SERPINA12 I04.091 +HGNC:30909 SERPINA13P serpin family A member 13, pseudogene pseudogene pseudogene Approved 14q32.13 14q32.13 UNQ6121 SERPINA13 "serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 13, pseudogene" Serpin peptidase inhibitors 739 2004-06-15 2012-10-03 2016-04-06 2016-04-06 388007 ENSG00000187483 OTTHUMG00000150191 AY358238 NR_015340 Q6UXR4 "15014966|16395595|24172014" PGOHUM00000250153 I04.966 +HGNC:44397 SERPINA15P serpin family A member 15, pseudogene pseudogene pseudogene Approved 8q23.3 08q23.3 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 15, pseudogene 2014-02-14 2014-02-18 2016-04-06 2016-04-06 101930744 ENSG00000255033 OTTHUMG00000165105 NG_033926 24172014 PGOHUM00000249781 +HGNC:3311 SERPINB1 serpin family B member 1 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "EI|PI2|anti-elastase" ELANH2 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 1|serpin peptidase inhibitor, clade B (ovalbumin), member 1" Serpin peptidase inhibitors 739 1993-07-27 2016-04-06 2016-04-06 1992 ENSG00000021355 OTTHUMG00000014124 uc003mub.5 M93056 XM_011514334 CCDS4477 P30740 "1376927|24172014" "MGI:1913472|MGI:2445361|MGI:2445363" RGD:1306203 SERPINB1 130135 I04.006 +HGNC:8584 SERPINB2 serpin family B member 2 protein-coding gene gene with protein product Approved 18q21.33-q22.1 18q21.33-q22.1 HsT1201 "PLANH2|PAI2" "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 2|serpin peptidase inhibitor, clade B (ovalbumin), member 2" Serpin peptidase inhibitors 739 1989-02-07 2016-04-06 2016-10-11 5055 ENSG00000197632 OTTHUMG00000060592 uc002ljo.4 Y00630 NM_002575 CCDS11989 P05120 24172014 MGI:97609 RGD:621823 SERPINB2 173390 I04.007 +HGNC:8585 SERPINB2L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-02-18 +HGNC:8586 SERPINB2L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-02-18 +HGNC:10569 SERPINB3 serpin family B member 3 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "T4-A|HsT1196" "SCC|SCCA1" "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 3|serpin peptidase inhibitor, clade B (ovalbumin), member 3" Serpin peptidase inhibitors 739 1995-08-15 2016-04-06 2016-10-05 6317 ENSG00000057149 OTTHUMG00000060403 uc002lji.3 U19568 NM_006919 CCDS11987 P29508 "7724531|24172014" "MGI:1277952|MGI:2683293|MGI:2683295|MGI:3573933" RGD:1549766 SERPINB3 600517 I04.008 +HGNC:10570 SERPINB4 serpin family B member 4 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "PI11|LEUPIN|SCCA-2|SCCA1" squamous cell carcinoma antigen 2 SCCA2 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 4|serpin peptidase inhibitor, clade B (ovalbumin), member 4" Serpin peptidase inhibitors 739 1995-09-15 2016-04-06 2016-04-06 6318 ENSG00000206073 OTTHUMG00000060405 uc002ljf.4 X89015 NM_175041 CCDS11986 P48594 "7724531|14630915|24172014" "MGI:1277952|MGI:2683293|MGI:2683295|MGI:3573933" RGD:1562868 SERPINB4 600518 I04.009 +HGNC:8949 SERPINB5 serpin family B member 5 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 maspin protease inhibitor 5 (maspin) PI5 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 5|serpin peptidase inhibitor, clade B (ovalbumin), member 5" Serpin peptidase inhibitors 739 1994-06-20 2016-04-06 2016-04-06 5268 ENSG00000206075 OTTHUMG00000141307 uc002liz.5 U04313 NM_002639 CCDS32839 P36952 "8290962|7724531|16720730|24172014" MGI:109579 RGD:69342 SERPINB5 154790 I04.980 +HGNC:8950 SERPINB6 serpin family B member 6 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "PTI|CAP" cytoplasmic antiproteinase "PI6|DFNB91" "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 6|deafness, autosomal recessive 91|serpin peptidase inhibitor, clade B (ovalbumin), member 6" Serpin peptidase inhibitors 739 1994-07-20 2016-04-06 2016-04-06 5269 ENSG00000124570 OTTHUMG00000016170 uc003muo.4 Z22658 XM_011514674 "CCDS4479|CCDS75386|CCDS75387" P35237 "8415716|9858835|20451170|24172014" "MGI:103123|MGI:2145481|MGI:2667778|MGI:2667783|MGI:894688" RGD:735108 SERPINB6 173321 233019 I04.011 +HGNC:13902 SERPINB7 serpin family B member 7 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 MEGSIN "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 7|serpin peptidase inhibitor, clade B (ovalbumin), member 7" Serpin peptidase inhibitors 739 2000-11-21 2016-04-06 2016-04-06 8710 ENSG00000166396 OTTHUMG00000060591 uc002ljl.4 AF027866 NM_003784 "CCDS11988|CCDS58633" O75635 24172014 MGI:2151053 RGD:71063 SERPINB7 603357 371936 I04.012 +HGNC:8952 SERPINB8 serpin family B member 8 protein-coding gene gene with protein product Approved 18q22.1 18q22.1 CAP2 cytoplasmic antiproteinase 2 PI8 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 8|serpin peptidase inhibitor, clade B (ovalbumin), member 8" Serpin peptidase inhibitors 739 1995-07-21 2016-04-06 2016-04-06 5271 ENSG00000166401 OTTHUMG00000060596 uc002lju.4 L40377 NM_001031848 "CCDS11991|CCDS42442|CCDS62460" P50452 "8530382|9268635|24172014" MGI:894657 RGD:1309833 SERPINB8 601697 I04.013 +HGNC:8953 SERPINB8P1 serpin family B member 8 pseudogene 1 pseudogene pseudogene Approved 6p25.2 06p25.2 "PI8L1|SERPINB11|SERPINBP1" "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin) pseudogene 1|serpin peptidase inhibitor, clade B (ovalbumin) pseudogene 1|serpin peptidase inhibitor, clade B8 (ovalbumin) pseudogene 1" 1999-08-20 2010-02-02 2016-04-06 2016-04-06 11029 ENSG00000217707 OTTHUMG00000014133 NG_002645 "10644448|24172014" PGOHUM00000243470 +HGNC:8955 SERPINB9 serpin family B member 9 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 CAP3 PI9 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 9|serpin peptidase inhibitor, clade B (ovalbumin), member 9" Serpin peptidase inhibitors 739 1995-07-21 2016-04-06 2016-04-06 5272 ENSG00000170542 OTTHUMG00000014131 uc003mug.5 L40378 XM_005249184 CCDS4478 P50453 "8530382|9858835|24172014" "MGI:106603|MGI:1919260|MGI:3709608|MGI:894667|MGI:894668|MGI:894669|MGI:894671|MGI:894672" RGD:1549730 SERPINB9 601799 I04.014 +HGNC:28590 SERPINB9P1 serpin family B member 9 pseudogene 1 pseudogene pseudogene Approved 6p25.2 06p25.2 MGC39372 serpin peptidase inhibitor, clade B (ovalbumin), member 9, pseudogene 1 2014-02-14 2016-04-06 2016-04-06 221756 ENSG00000230438 OTTHUMG00000014127 BC025340 NR_033851 24172014 PGOHUM00000243041 +HGNC:8942 SERPINB10 serpin family B member 10 protein-coding gene gene with protein product Approved 18q21.3 18q21.3 bomapin protease inhibitor 10 (ovalbumin type, bomapin) PI10 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 10|serpin peptidase inhibitor, clade B (ovalbumin), member 10" Serpin peptidase inhibitors 739 1995-09-13 2016-04-06 2016-04-06 5273 ENSG00000242550 OTTHUMG00000060594 uc010xev.3 U35459 NM_005024 CCDS11990 P48595 "9268635|10871600|24172014" MGI:2138648 RGD:628853 SERPINB10 602058 I04.015 +HGNC:14221 SERPINB11 serpin family B member 11 (gene/pseudogene) protein-coding gene gene with protein product Approved 18q21.33 18q21.33 EPIPIN "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 11|serpin peptidase inhibitor, clade B (ovalbumin), member 11|serpin peptidase inhibitor, clade B (ovalbumin), member 11 (gene/pseudogene)" Serpin peptidase inhibitors 739 2001-06-27 2016-04-06 2016-04-06 89778 ENSG00000206072 OTTHUMG00000060404 uc032hfq.2 NM_080475 CCDS77196 Q96P15 "17562709|24172014" MGI:1914207 RGD:1306497 SERPINB11 615682 I04.956 +HGNC:14220 SERPINB12 serpin family B member 12 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 YUKOPIN "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 12|serpin peptidase inhibitor, clade B (ovalbumin), member 12" Serpin peptidase inhibitors 739 2001-06-27 2016-04-06 2016-04-06 89777 ENSG00000166634 OTTHUMG00000132789 uc010xen.2 AF411191 NM_080474 "CCDS11984|CCDS77194" Q96P63 24172014 MGI:1919119 RGD:1566382 SERPINB12 615662 I04.016 +HGNC:8944 SERPINB13 serpin family B member 13 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "HUR7|hurpin|headpin" PI13 "serine (or cysteine) proteinase inhibitor, clade B (ovalbumin), member 13|serpin peptidase inhibitor, clade B (ovalbumin), member 13" Serpin peptidase inhibitors 739 1995-12-20 2016-04-06 2016-04-06 5275 ENSG00000197641 OTTHUMG00000060406 uc002ljc.4 "AF169949|BC101821" NM_012397 "CCDS11985|CCDS77195" Q9UIV8 "9297979|10512713|24172014" MGI:3042250 RGD:1304661 SERPINB13 604445 I04.017 +HGNC:775 SERPINC1 serpin family C member 1 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "ATIII|MGC22579" "antithrombin III|signal peptide antithrombin part 1|coding sequence signal peptide antithrombin part 1|antithrombin (aa 375-432)" AT3 "serine (or cysteine) proteinase inhibitor, clade C (antithrombin), member 1|serpin peptidase inhibitor, clade C (antithrombin), member 1" Serpin peptidase inhibitors 739 1986-01-01 2016-04-06 2016-10-12 462 ENSG00000117601 OTTHUMG00000037276 uc001gjt.4 X68793 NM_000488 CCDS1313 P01008 "3979120|24172014" MGI:88095 RGD:1307404 "Antithrombin III mutation database|http://www1.imperial.ac.uk/departmentofmedicine/divisions/experimentalmedicine/haematology/coag/antithrombin/|LRG_577|http://www.lrg-sequence.org/LRG/LRG_577" SERPINC1 107300 118609 I04.018 objectId:2632 +HGNC:4838 SERPIND1 serpin family D member 1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "HC-II|HLS2|HC2|D22S673" "heparin cofactor II|heparin cofactor 2" HCF2 "serine (or cysteine) proteinase inhibitor, clade D (heparin cofactor), member 1|serpin peptidase inhibitor, clade D (heparin cofactor), member 1" Serpin peptidase inhibitors 739 1988-05-31 2016-04-06 2016-10-12 3053 ENSG00000099937 OTTHUMG00000150755 uc002ztb.2 M12849 NM_000185 CCDS13783 P05546 "1671335|24172014" MGI:96051 RGD:619854 LRG_594|http://www.lrg-sequence.org/LRG/LRG_594 SERPIND1 142360 I04.019 +HGNC:8583 SERPINE1 serpin family E member 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 PAI plasminogen activator inhibitor, type I "PLANH1|PAI1" "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1" Serpin peptidase inhibitors 739 1986-01-01 2016-04-06 2016-10-12 5054 ENSG00000106366 OTTHUMG00000157107 uc003uxt.4 M16006 NM_000602 CCDS5711 P05121 "3097076|2891140|24172014" MGI:97608 RGD:3249 LRG_597|http://www.lrg-sequence.org/LRG/LRG_597 SERPINE1 173360 118613 I04.020 +HGNC:8951 SERPINE2 serpin family E member 2 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "PN1|GDN|PNI|nexin" glial-derived nexin 1 PI7 "serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2|serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2" Serpin peptidase inhibitors 739 1994-09-01 2016-04-06 2016-04-06 5270 ENSG00000135919 OTTHUMG00000133163 uc002vnu.3 M17783 NM_006216 "CCDS2460|CCDS46525|CCDS46526" P07093 "7665170|24172014" MGI:101780 RGD:3748 SERPINE2 177010 I04.021 +HGNC:24774 SERPINE3 serpin family E member 3 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3 Serpin peptidase inhibitors 739 2008-09-05 2016-04-06 2016-04-06 647174 ENSG00000253309 OTTHUMG00000016943 uc058xdi.1 AX772926 NM_001101320 CCDS53870 A8MV23 24172014 MGI:2442020 RGD:1585042 SERPINE3 I04.972 +HGNC:44400 SERPINE4P serpin family E member 4, pseudogene pseudogene pseudogene Approved 15q12 15q12 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 4 pseudogene 2014-02-14 2016-04-06 2016-04-06 101930745 ENSG00000258624 OTTHUMG00000171826 NG_033925 24172014 PGOHUM00000247016 +HGNC:8824 SERPINF1 serpin family F member 1 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "EPC-1|PIG35" "pigment epithelium-derived factor|proliferation-inducing protein 35" PEDF "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1|sserpin family F member 1" Serpin peptidase inhibitors 739 1993-05-18 2016-04-12 2016-04-12 5176 ENSG00000132386 OTTHUMG00000090571 uc002ftl.4 M76979 NM_002615 CCDS11012 P36955 "8434014|24172014" MGI:108080 RGD:631369 SERPINF1 variant database|https://oi.gene.le.ac.uk/home.php?select_db=SERPINF1 SERPINF1 172860 265490 I04.979 +HGNC:9075 SERPINF2 serpin family F member 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "API|ALPHA-2-PI|A2AP|AAP" "alpha-2-plasmin inhibitor|alpha-2-antiplasmin" PLI "serine (or cysteine) proteinase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 2" Serpin peptidase inhibitors 739 1989-04-14 2016-04-06 2016-10-12 5345 ENSG00000167711 OTTHUMG00000090552 uc002ftk.1 D00174 NM_000934 "CCDS11011|CCDS54064" P08697 "3416655|24172014" MGI:107173 RGD:1306692 LRG_885|http://www.lrg-sequence.org/LRG/LRG_885 SERPINF2 613168 201277 I04.023 +HGNC:1228 SERPING1 serpin family G member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "C1IN|C1-INH|HAE1|HAE2" "plasma protease C1 inhibitor|angioedema, hereditary" C1NH "serine (or cysteine) proteinase inhibitor, clade G (C1 inhibitor), member 1, (angioedema, hereditary)|serpin peptidase inhibitor, clade G (C1 inhibitor), member 1" Serpin peptidase inhibitors 739 2001-06-22 2016-04-06 2016-10-12 710 ENSG00000149131 OTTHUMG00000150304 uc001nkp.2 X54486 NM_000062 CCDS7962 P05155 "2026152|24172014" MGI:894696 RGD:735225 "SERPING1base: Mutation registry for Hereditary angioedema|http://structure.bmc.lu.se/idbase/SERPING1base/|LRG_105|http://www.lrg-sequence.org/LRG/LRG_105" SERPING1 606860 118618 I04.024 +HGNC:1546 SERPINH1 serpin family H member 1 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "HSP47|colligen" collagen binding protein 1 "CBP1|CBP2|SERPINH2" "serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 2|serine (or cysteine) proteinase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)|serpin peptidase inhibitor, clade H (heat shock protein 47), member 1, (collagen binding protein 1)" Serpin peptidase inhibitors 739 1994-01-10 2016-04-06 2016-04-06 871 ENSG00000149257 OTTHUMG00000165362 uc009yug.4 X61598 NM_004353 CCDS8239 P50454 "7656593|9533029|24172014" MGI:88283 RGD:69302 Osteogenesis Imperfecta Variant Database|https://oi.gene.le.ac.uk/home.php?select_db=SERPINH1 SERPINH1 600943 227095 +HGNC:19917 SERPINH1P1 serpin family H member 1 pseudogene 1 pseudogene pseudogene Approved 9p13.3 09p13.3 "bA571F15.6|pshsp47" SERPINHP1 "serine (or cysteine) proteinase inhibitor, clade H, pseudogene 1|serpin peptidase inhibitor, clade H, pseudogene 1|serpin peptidase inhibitor, clade H1, pseudogene 1" 2002-12-09 2010-02-02 2016-04-06 2016-04-06 158172 ENSG00000229207 OTTHUMG00000000429 AB010273 NG_006020 "10023073|24172014" PGOHUM00000236445 +HGNC:8943 SERPINI1 serpin family I member 1 protein-coding gene gene with protein product Approved 3q26.1 03q26.1 neuroserpin PI12 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 1|serpin peptidase inhibitor, clade I (neuroserpin), member 1" Serpin peptidase inhibitors 739 1995-12-20 2016-04-06 2016-04-06 5274 ENSG00000163536 OTTHUMG00000158450 uc003ffa.5 Z81326 XM_017006618 CCDS3203 Q99574 24172014 MGI:1194506 RGD:619896 SERPINI1 602445 118623 I04.025 +HGNC:8945 SERPINI2 serpin family I member 2 protein-coding gene gene with protein product Approved 3q26.1 03q26.1 "PANCPIN|TSA2004|MEPI|pancpin" PI14 "serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 2|serine (or cysteine) proteinase inhibitor, clade I (pancpin), member 2|serpin peptidase inhibitor, clade I (pancpin), member 2" Serpin peptidase inhibitors 739 1995-12-20 2016-04-06 2016-04-06 5276 ENSG00000114204 OTTHUMG00000158231 uc062psb.1 AB006423 NM_006217 "CCDS3200|CCDS75047" O75830 "9624529|24172014" MGI:1915181 RGD:619897 SERPINI2 605587 I04.026 +HGNC:17932 SERTAD1 SERTA domain containing 1 protein-coding gene gene with protein product Approved 19q13.1-q13.2 19q13.1-q13.2 "SEI1|TRIP-Br1" "CDK4-binding protein p34SEI|transcriptional regulator interacting with the PHD-bromodomain 1" 2004-02-16 2014-11-19 29950 ENSG00000197019 OTTHUMG00000182594 uc002ont.6 AF117959 NM_013376 CCDS12557 Q9UHV2 "6434876|10580009" MGI:1913438 RGD:1549778 SERTAD1 +HGNC:30784 SERTAD2 SERTA domain containing 2 protein-coding gene gene with protein product Approved 2p14 02p14 "TRIP-Br2|KIAA0127|Sei-2" transcriptional regulator interacting with the PHS-bromodomain 2 2004-02-16 2016-10-05 9792 ENSG00000179833 OTTHUMG00000152678 uc002sde.3 D50917 NM_014755 CCDS33210 Q14140 "8590280|11331592" MGI:1931026 RGD:1564049 SERTAD2 +HGNC:17931 SERTAD3 SERTA domain containing 3 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 RBT1 RPA-binding trans-activator 2004-02-16 2014-11-19 29946 ENSG00000167565 OTTHUMG00000182595 uc002onv.5 AF192529 NM_013368 CCDS12558 Q9UJW9 "10982866|11331592" MGI:2180697 RGD:1564271 SERTAD3 612125 +HGNC:25236 SERTAD4 SERTA domain containing 4 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 DJ667H12.2 2004-02-17 2016-10-05 56256 ENSG00000082497 OTTHUMG00000036391 uc001hhy.4 BC012083 NM_019605 CCDS1494 Q9NUC0 12477932 MGI:2443496 RGD:1565408 SERTAD4 +HGNC:32019 SERTAD4-AS1 SERTAD4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q32.2 01q32.2 C1orf133 "chromosome 1 open reading frame 133|SERTAD4 antisense RNA 1 (non-protein coding)" 2005-06-30 2012-07-12 2012-08-15 2014-11-19 574036 ENSG00000203706 OTTHUMG00000036392 uc001hhx.6 BC066352 NR_024337 Q5TG53 +HGNC:33792 SERTM1 serine rich and transmembrane domain containing 1 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 C13orf36 "chromosome 13 open reading frame 36|serine-rich and transmembrane domain containing 1" 2008-06-11 2011-08-09 2016-02-01 2016-02-01 400120 ENSG00000180440 OTTHUMG00000016735 uc001uvt.5 NM_203451 CCDS9358 A2A2V5 MGI:3607715 RGD:1597355 +HGNC:21595 SESN1 sestrin 1 protein-coding gene gene with protein product Approved 6q21 06q21 "SEST1|PA26" 2003-09-03 2014-11-19 27244 ENSG00000080546 OTTHUMG00000015338 uc003psu.4 AF033120 NM_014454 "CCDS5070|CCDS56444|CCDS56445" Q9Y6P5 "9926927|7938006" MGI:2155278 RGD:1307517 SESN1 606103 +HGNC:20746 SESN2 sestrin 2 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "SES2|DKFZp761M0212|HI95|SEST2" 2003-09-03 2016-10-05 83667 ENSG00000130766 OTTHUMG00000003532 uc001bps.4 AY123223 NM_031459 CCDS321 P58004 "12607115|12203114" MGI:2651874 RGD:1566319 SESN2 607767 +HGNC:23060 SESN3 sestrin 3 protein-coding gene gene with protein product Approved 11q21 11q21 "SEST3|MGC29667" 2003-09-03 2014-11-18 143686 ENSG00000149212 OTTHUMG00000167829 uc001pfj.6 AK096300 NM_144665 "CCDS8303|CCDS60938" P58005 12607115 MGI:1922997 RGD:1309470 SESN3 607768 +HGNC:18379 SESTD1 SEC14 and spectrin domain containing 1 protein-coding gene gene with protein product Approved 2q31.2 02q31.2 "DKFZp434O0515|Solo" SEC14 and spectrin domains 1 2002-07-04 2015-11-18 2016-10-05 91404 ENSG00000187231 OTTHUMG00000154554 uc002uni.5 AK096232 NM_178123 CCDS33338 Q86VW0 12837271 MGI:1916262 RGD:1562244 SESTD1 +HGNC:10760 SET SET nuclear proto-oncogene protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "PHAPII|2PP2A|IPP2A2" "protein phosphatase type 2A inhibitor|Template-Activating Factor-I, chromatin remodelling factor" SET translocation (myeloid leukemia-associated) 1998-04-20 2014-06-25 2016-10-05 6418 ENSG00000119335 OTTHUMG00000020755 uc004bvu.5 M93651 NM_001122821 "CCDS6907|CCDS48037|CCDS59149|CCDS59150" Q01105 "1630450|8626647" MGI:1860267 RGD:1307467 SET 600960 +HGNC:15573 SETBP1 SET binding protein 1 protein-coding gene gene with protein product Approved 18q12.3 18q12.3 "SEB|KIAA0437" 2001-06-05 2016-10-05 26040 ENSG00000152217 OTTHUMG00000132613 uc010dni.3 AB022660 NM_001130110 "CCDS11923|CCDS45859" Q9Y6X0 11231286 MGI:1933199 RGD:1306229 SETBP1 611060 231397 +HGNC:29010 SETD1A SET domain containing 1A protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "KIAA0339|Set1|KMT2F" "Lysine methyltransferases|RNA binding motif containing" "487|725" 2006-02-15 2014-11-18 9739 ENSG00000099381 OTTHUMG00000150474 uc002ead.2 AB002337 NM_014712 CCDS32435 O15047 "9205841|12670868" MGI:2446244 RGD:1311624 SETD1A 611052 objectId:2700 +HGNC:29187 SETD1B SET domain containing 1B protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "KIAA1076|Set1B|KMT2G" "Lysine methyltransferases|RNA binding motif containing" "487|725" 2006-02-15 2013-02-12 23067 ENSG00000139718 OTTHUMG00000169080 uc058ujh.1 AB028999 XM_037523 CCDS53838 Q9UPS6 "10470851|17355966" MGI:2652820 RGD:2323325 SETD1B 611055 objectId:2701 +HGNC:18420 SETD2 SET domain containing 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "HYPB|HIF-1|KIAA1732|FLJ23184|KMT3A" Lysine methyltransferases 487 2006-02-15 2016-10-12 29072 ENSG00000181555 OTTHUMG00000133514 uc003cqs.4 AJ238403 NM_014159 CCDS2749 Q9BYW2 "16118227|11461154" MGI:1918177 RGD:1305576 LRG_775|http://www.lrg-sequence.org/LRG/LRG_775 SETD2 612778 412839 objectId:2702 +HGNC:20493 SETD3 SET domain containing 3 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 FLJ23027 C14orf154 chromosome 14 open reading frame 154 2004-06-11 2006-02-15 2006-02-15 2015-08-25 84193 ENSG00000183576 OTTHUMG00000028970 uc001ygc.4 AK026680 NM_032233 "CCDS9951|CCDS9952" Q86TU7 MGI:1289184 RGD:1309550 SETD3 615671 +HGNC:1258 SETD4 SET domain containing 4 protein-coding gene gene with protein product Approved 21q22.12 21q22.12 "C21orf27|C21orf18" "chromosome 21 open reading frame 27|chromosome 21 open reading frame 18" 2000-05-23 2006-02-15 2006-02-15 2016-10-05 54093 ENSG00000185917 OTTHUMG00000086483 uc021wiy.3 AK001660 NM_017438 "CCDS13640|CCDS42923|CCDS74791|CCDS74792" Q9NVD3 MGI:2136890 RGD:619899 SETD4 +HGNC:25566 SETD5 SET domain containing 5 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 FLJ10707 2006-02-15 2015-09-02 55209 ENSG00000168137 OTTHUMG00000150491 uc003brt.3 BC020956 XM_371614 "CCDS46741|CCDS74892" Q9C0A6 11214970 MGI:1920145 RGD:1310433 SETD5 615743 406882 +HGNC:26116 SETD6 SET domain containing 6 protein-coding gene gene with protein product Approved 16q21 16q21 FLJ21148 2006-02-15 2015-08-25 79918 ENSG00000103037 OTTHUMG00000150276 uc002enr.4 AK024801 NM_024860 "CCDS10798|CCDS54013" Q8TBK2 12477932 MGI:1913333 RGD:1560538 SETD6 616424 +HGNC:51596 SETD6P1 SET domain containing 6 pseudogene 1 pseudogene pseudogene Approved 2q12.3 02q12.3 2015-03-12 2015-03-17 106481727 ENSG00000236877 OTTHUMG00000184506 NG_045049 PGOHUM00000298058 +HGNC:30412 SETD7 SET domain containing lysine methyltransferase 7 protein-coding gene gene with protein product Approved 4q31.1 04q31.1 "KIAA1717|SET7|SET7/9|Set9|KMT7" Lysine methyltransferases 487 2006-02-15 2016-03-01 2016-03-01 80854 ENSG00000145391 OTTHUMG00000133385 uc003ihw.4 AB051504 NM_030648 "CCDS3748|CCDS77961|CCDS82956" Q8WTS6 "11850410|11779497" MGI:1920501 RGD:1586346 SETD7 606594 objectId:2703 +HGNC:30088 SETD8P1 SET domain containing 8 pseudogene 1 pseudogene pseudogene Approved 13q11 13q11 SET07p 2007-08-17 2015-08-11 57108 ENSG00000279730 OTTHUMG00000191380 NG_003193 PGOHUM00000292060 +HGNC:28508 SETD9 SET domain containing 9 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 MGC33648 C5orf35 chromosome 5 open reading frame 35 2006-10-31 2012-02-23 2012-02-23 2014-11-19 133383 ENSG00000155542 OTTHUMG00000059485 uc003jqx.4 BC036528 NM_153706 CCDS3972 Q8NE22 20930037 RGD:2318781 +HGNC:10761 SETDB1 SET domain bifurcated 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "KG1T|KIAA0067|ESET|KMT1E|TDRD21" tudor domain containing 21 SET domain, bifurcated 1 "Lysine methyltransferases|Tudor domain containing|Methyl-CpG binding domain containing" "487|780|1025" 1999-07-19 2016-02-01 2016-10-05 9869 ENSG00000143379 OTTHUMG00000035003 uc001evv.3 D31891 NM_001145415 "CCDS972|CCDS44217|CCDS58026" Q15047 10343109 MGI:1934229 RGD:1308370 SETDB1 604396 objectId:2705 +HGNC:20263 SETDB2 SET domain bifurcated 2 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "CLLD8|CLLL8|KMT1F" C13orf4 "chromosome 13 open reading frame 4|SET domain, bifurcated 2" "Lysine methyltransferases|Methyl-CpG binding domain containing" "487|1025" 2003-01-16 2003-05-09 2016-02-01 2016-10-05 83852 ENSG00000136169 OTTHUMG00000016918 uc001vcz.4 AF334407 NM_031915 "CCDS9417|CCDS53868" Q96T68 11306461 MGI:2685139 RGD:2319564 SETDB2 607865 objectId:2706 +HGNC:10762 SETMAR SET domain and mariner transposase fusion gene protein-coding gene gene with protein product Approved 3p26.1 03p26.1 metnase 1997-11-20 2016-10-05 6419 ENSG00000170364 OTTHUMG00000090265 uc011asp.3 U80776 NM_006515 "CCDS2563|CCDS58814|CCDS63528" Q53H47 9461395 MGI:1921979 RGD:1565882 SETMAR 609834 +HGNC:19279 SETP1 SET pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 SETP SETP19 SET pseudogene 19 2005-09-23 2014-11-19 100133314 ENSG00000258863 OTTHUMG00000170988 NG_030238 PGOHUM00000247729 +HGNC:20032 SETP2 SET pseudogene 2 pseudogene pseudogene Approved 14q22.1 14q22.1 2003-01-13 2014-11-19 326277 ENSG00000258893 OTTHUMG00000171075 NG_002537 PGOHUM00000248167 +HGNC:31115 SETP3 SET pseudogene 3 pseudogene pseudogene Approved 17q22 17q22 SETP13 "SET translocation, pseudogene 3|SET pseudogene 13" 2005-09-23 2005-09-23 2014-11-18 619349 ENSG00000266648 OTTHUMG00000179241 NG_032022 +HGNC:42923 SETP4 SET pseudogene 4 pseudogene pseudogene Approved Xq21.1 Xq21.1 2011-09-06 2011-09-06 642869 ENSG00000237211 OTTHUMG00000021927 NG_017144 PGOHUM00000241878 +HGNC:42924 SETP5 SET pseudogene 5 pseudogene pseudogene Approved 9q34.3 09q34.3 2011-09-06 2011-09-06 100130014 ENSG00000233998 OTTHUMG00000020994 NG_021638 PGOHUM00000236347 +HGNC:42925 SETP6 SET pseudogene 6 pseudogene pseudogene Approved 3p12.2 03p12.2 2011-09-06 2011-09-06 100419178 ENSG00000241319 OTTHUMG00000159004 NG_025596 PGOHUM00000237668 +HGNC:42926 SETP7 SET pseudogene 7 pseudogene pseudogene Approved 12q23.3 12q23.3 2011-09-06 2011-09-06 100873166 ENSG00000257444 OTTHUMG00000169999 NG_032537 PGOHUM00000239917 +HGNC:42927 SETP8 SET pseudogene 8 pseudogene pseudogene Approved Xq23 Xq23 2011-09-06 2011-09-06 100128536 ENSG00000213526 OTTHUMG00000022249 NG_022693 PGOHUM00000241965 +HGNC:42928 SETP9 SET pseudogene 9 pseudogene pseudogene Approved 1q23.3 01q23.3 2011-09-06 2011-09-06 100129738 ENSG00000235101 OTTHUMG00000024004 NG_022811 PGOHUM00000245040 +HGNC:42929 SETP10 SET pseudogene 10 pseudogene pseudogene Approved 1q25.2 01q25.2 2011-09-06 2011-09-06 100287822 ENSG00000231905 OTTHUMG00000041096 NG_022819 PGOHUM00000245099 +HGNC:42930 SETP11 SET pseudogene 11 pseudogene pseudogene Approved 3q25.1 03q25.1 2011-09-06 2011-09-06 100419187 ENSG00000239570 OTTHUMG00000159860 NG_025756 PGOHUM00000238231 +HGNC:42931 SETP12 SET pseudogene 12 pseudogene pseudogene Approved 4q27 04q27 2011-09-06 2011-09-06 100419158 ENSG00000251609 OTTHUMG00000161142 NG_025157 PGOHUM00000245681 +HGNC:42933 SETP14 SET pseudogene 14 pseudogene pseudogene Approved 3q25.31 03q25.31 2011-09-06 2011-09-06 389168 ENSG00000240489 OTTHUMG00000158545 NG_017152 PGOHUM00000238240 +HGNC:42934 SETP15 SET pseudogene 15 pseudogene pseudogene Approved Xp22.2 Xp22.2 2011-09-06 2011-09-06 100856877 ENSG00000226536 OTTHUMG00000021185 NG_031903 PGOHUM00000241653 +HGNC:42935 SETP16 SET pseudogene 16 pseudogene pseudogene Approved 11q23.3 11q23.3 2011-09-06 2011-09-06 649925 ENSG00000254621 OTTHUMG00000166412 NG_021806 PGOHUM00000242502 +HGNC:42936 SETP17 SET pseudogene 17 pseudogene pseudogene Approved 11q14.2 11q14.2 2011-09-06 2011-09-06 100130043 ENSG00000255222 OTTHUMG00000167211 NG_021827 PGOHUM00000242834 +HGNC:42939 SETP20 SET pseudogene 20 pseudogene pseudogene Approved 4q25 04q25 2011-09-06 2012-10-08 389217 ENSG00000225094 OTTHUMG00000161100 NG_029996 PGOHUM00000250727 +HGNC:42940 SETP21 SET pseudogene 21 pseudogene pseudogene Approved 5q12.1 05q12.1 2011-09-06 2011-09-06 100856878 ENSG00000214244 OTTHUMG00000162435 NG_031904 PGOHUM00000251306 +HGNC:42941 SETP22 SET pseudogene 22 pseudogene pseudogene Approved 5q15 05q15 2011-09-06 2011-09-06 642737 ENSG00000213701 OTTHUMG00000162868 NG_017145 PGOHUM00000251323 +HGNC:42937 SETSIP SET-like protein protein-coding gene gene with protein product Approved 1p22.1 01p22.1 SET similar protein SETP18 SET pseudogene 18 2011-09-06 2013-12-17 2013-12-17 2015-09-08 646817 ENSG00000230667 OTTHUMG00000010287 NM_001287737 CCDS72821 P0DME0 22869753 RGD:727855 +HGNC:445 SETX senataxin protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "KIAA0625|AOA2" "ALS4|SCAR1" "amyotrophic lateral sclerosis 4|spinocerebellar ataxia, recessive, non-Friedreich type 1" UPF1 like RNA helicases 1169 1996-10-26 2005-11-29 2005-11-29 2016-10-12 23064 ENSG00000107290 OTTHUMG00000020834 uc004cbk.4 AB014525 NM_015046 CCDS6947 Q7Z333 "9497266|11022012" MGI:2443480 RGD:1565575 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LOVD - Leiden Open Variation Database|http://www.geschwind.med.ucla.edu/LOVD/home.php?select_db=SETX|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_268|http://www.lrg-sequence.org/LRG/LRG_268" SETX 608465 118627 +HGNC:15955 SEZ6 seizure related 6 homolog protein-coding gene gene with protein product Approved 17q11.2 17q11.2 seizure related 6 homolog (mouse) Sushi domain containing 1179 2001-06-25 2016-04-19 2016-04-19 124925 ENSG00000063015 OTTHUMG00000168010 uc002hdp.3 AY038048 XM_011524317 "CCDS45638|CCDS45639" Q53EL9 17086543 MGI:104745 RGD:619780 SEZ6 616666 +HGNC:10763 SEZ6L seizure related 6 homolog like protein-coding gene gene with protein product Approved 22q12.1 22q12.1 seizure related gene 6 (mouse)-like Sushi domain containing 1179 1999-10-12 2016-04-19 2016-04-19 23544 ENSG00000100095 OTTHUMG00000150870 uc003acb.4 AL050253 XM_006724195 "CCDS13833|CCDS54508|CCDS54510|CCDS54511|CCDS74837|CCDS54509" Q9BYH1 MGI:1935121 RGD:1563628 SEZ6L 607021 +HGNC:30844 SEZ6L2 seizure related 6 homolog like 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "PSK-1|FLJ90517" type I transmembrane receptor (seizure related protein) seizure related 6 homolog (mouse)-like 2 Sushi domain containing 1179 2004-07-12 2016-04-19 2016-10-05 26470 ENSG00000174938 OTTHUMG00000132112 uc002dup.5 AY358404 NM_012410 "CCDS10658|CCDS10659|CCDS45458|CCDS58447|CCDS73865" Q6UXD5 "12975309|26698217" MGI:2385295 RGD:1565281 SEZ6L2 616667 +HGNC:12950 SF1 splicing factor 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "ZFM1|ZCCHC25" ZNF162 zinc finger protein 162 Zinc fingers CCHC-type 74 1994-09-27 2002-01-11 2001-12-19 2016-10-12 7536 ENSG00000168066 OTTHUMG00000066833 uc001obc.3 D26120 NM_004630 "CCDS31599|CCDS44642|CCDS53660|CCDS53661|CCDS8080|CCDS8081" Q15637 "7912130|9573336" MGI:1095403 RGD:620645 LRG_617|http://www.lrg-sequence.org/LRG/LRG_617 SF1 601516 +HGNC:10765 SF3A1 splicing factor 3a subunit 1 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "SF3a120|SAP114|PRPF21|Prp21" "splicing factor 3a, subunit 1, 120kD|splicing factor 3a, subunit 1, 120kDa" 2000-02-29 2015-11-09 2016-10-12 10291 ENSG00000099995 OTTHUMG00000151005 uc003ahl.4 X85237 NM_005877 CCDS13875 Q15459 7489498 MGI:1914715 RGD:1311477 LRG_622|http://www.lrg-sequence.org/LRG/LRG_622 SF3A1 605595 +HGNC:10766 SF3A2 splicing factor 3a subunit 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "SF3a66|SAP62|PRPF11|Prp11" "splicing factor 3a, subunit 2, 66kD|splicing factor 3a, subunit 2, 66kDa" 2000-02-29 2015-11-09 2015-11-09 8175 ENSG00000104897 OTTHUMG00000180414 uc002lvg.4 L21990 NM_007165 CCDS12084 Q15428 "8211113|8541848" MGI:104912 RGD:1308627 SF3A2 600796 +HGNC:10767 SF3A3 splicing factor 3a subunit 3 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "SF3a60|SAP61|PRP9|PRPF9" "splicing factor 3a, subunit 3, 60kD|splicing factor 3a, subunit 3, 60kDa" 2000-02-29 2015-11-09 2015-11-09 10946 ENSG00000183431 OTTHUMG00000004438 uc001cci.4 U08815 NM_006802 CCDS428 Q12874 "7816610|8022796" MGI:1922312 RGD:1308726 SF3A3 605596 +HGNC:16576 SF3A3P1 splicing factor 3a, subunit 3 pseudogene 1 pseudogene pseudogene Approved 20p13 20p13 dJ581P3.1 SF3A3P splicing factor 3a, subunit 3 pseudogene 2001-09-17 2006-09-25 2006-09-25 2016-07-22 170548 ENSG00000230568 OTTHUMG00000031745 AL109805 NG_001054 PGOHUM00000296885 +HGNC:23277 SF3A3P2 splicing factor 3a, subunit 3 pseudogene 2 pseudogene pseudogene Approved 11q24.1 11q24.1 2006-09-25 2006-09-25 449645 ENSG00000254449 OTTHUMG00000166005 NG_004710 +HGNC:10768 SF3B1 splicing factor 3b subunit 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "SAP155|SF3b155|PRPF10|Prp10|Hsh155" "splicing factor 3b, subunit 1, 155kD|splicing factor 3b, subunit 1, 155kDa" 2000-02-29 2015-11-09 2016-10-12 23451 ENSG00000115524 OTTHUMG00000154447 uc002uue.4 AF054284 XR_001738680 "CCDS33356|CCDS46479|CCDS82550" O75533 9585501 MGI:1932339 RGD:620148 LRG_624|http://www.lrg-sequence.org/LRG/LRG_624 SF3B1 605590 412551 +HGNC:10769 SF3B2 splicing factor 3b subunit 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "SAP145|SF3b1|Cus1|SF3b145" "splicing factor 3b, subunit 2, 145kD|splicing factor 3b, subunit 2, 145kDa" 2000-02-29 2015-11-09 2016-10-05 10992 ENSG00000087365 OTTHUMG00000166751 uc001ogy.2 U41371 XM_005273726 CCDS31612 Q13435 8566756 MGI:2441856 RGD:1307159 SF3B2 605591 +HGNC:10770 SF3B3 splicing factor 3b subunit 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "SAP130|SF3b130|RSE1|KIAA0017" "splicing factor 3b, subunit 3, 130kD|splicing factor 3b, subunit 3, 130kDa" 2000-02-29 2015-11-09 2016-10-05 23450 ENSG00000189091 OTTHUMG00000137582 uc002ezf.3 AJ001443 NM_012426 CCDS10894 Q15393 10490618 MGI:1289341 RGD:1311636 SF3B3 605592 +HGNC:10771 SF3B4 splicing factor 3b subunit 4 protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "SAP49|SF3b49|Hsh49" "splicing factor 3b, subunit 4, 49kD|splicing factor 3b, subunit 4, 49kDa" RNA binding motif containing 725 2000-02-29 2015-11-09 2015-11-09 10262 ENSG00000143368 OTTHUMG00000012208 uc001etk.3 L35013 NM_005850 CCDS72900 Q15427 7958871 MGI:109580 RGD:1309667 SF3B4 605593 302925 +HGNC:19821 SF3B4P1 splicing factor 3b, subunit 4 pseudogene 1 pseudogene pseudogene Approved 14q23 14q23 SF3B4P splicing factor 3b, subunit 4, pseudogene 2003-01-13 2010-04-20 2010-04-20 2014-11-19 326276 NG_002536 +HGNC:21083 SF3B5 splicing factor 3b subunit 5 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 "SF3b10|MGC3133|Ysf3" splicing factor 3b, subunit 5, 10kDa 2003-05-28 2015-11-09 2016-10-05 83443 ENSG00000169976 OTTHUMG00000015737 uc003qkr.2 BC000198 NM_031287 CCDS5204 Q9BWJ5 12234937 MGI:1913375 RGD:1586993 SF3B5 +HGNC:30096 SF3B6 splicing factor 3b subunit 6 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "P14|SF3B14a|Ht006|CGI-110|SAP14a" pre mRNA branch site protein p14 splicing factor 3b, subunit 6, 14kDa 2014-02-14 2015-11-09 2016-10-05 51639 ENSG00000115128 OTTHUMG00000125499 NM_016047 CCDS1707 Q9Y3B4 "11500380|12738865" MGI:1913305 RGD:2318878 607835 +HGNC:29064 SFI1 SFI1 centrin binding protein protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "KIAA0542|PISD|PPP1R139" protein phosphatase 1, regulatory subunit 139 Sfi1 homolog, spindle assembly associated (yeast) Protein phosphatase 1 regulatory subunits 694 2005-02-08 2015-06-29 2015-06-29 9814 ENSG00000198089 OTTHUMG00000030249 uc003ale.5 AB011114 NM_014775 "CCDS43004|CCDS43005|CCDS58803|CCDS58804" A8K8P3 "14504268|19857500" MGI:1926137 RGD:1560636 SFI1 612765 +HGNC:20255 SFMBT1 Scm-like with four mbt domains 1 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "RU1|DKFZp434L243|SFMBT" "Sterile alpha motif domain containing|MBT domain containing" "760|1263" 2003-11-14 2016-10-05 51460 ENSG00000163935 OTTHUMG00000159052 uc003dgh.4 AF168132 NM_016329 CCDS2867 Q9UHJ3 10661410 MGI:1859609 RGD:61999 SFMBT1 607319 +HGNC:20256 SFMBT2 Scm-like with four mbt domains 2 protein-coding gene gene with protein product Approved 10p14 10p14 KIAA1617 Scm-related gene containing four mbt domains 2 "Sterile alpha motif domain containing|MBT domain containing" "760|1263" 2003-06-16 2003-11-14 2016-10-05 57713 ENSG00000198879 OTTHUMG00000017630 uc001ijn.2 AB046837 NM_001029880 CCDS31138 Q5VUG0 10997877 MGI:2447794 RGD:1305027 SFMBT2 615392 +HGNC:10773 SFN stratifin protein-coding gene gene with protein product Approved 1p36.11 01p36.11 YWHAS 14-3-3 sigma 14-3-3 phospho-serine/phospho-threonine binding proteins 1053 1994-09-15 2014-11-19 2810 ENSG00000175793 OTTHUMG00000004093 uc001bnc.2 BC023552 NM_006142 CCDS288 P31947 8515476 MGI:1891831 RGD:1304729 SFN 601290 +HGNC:10774 SFPQ splicing factor proline and glutamine rich protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "PSF|PPP1R140" "polypyrimidine tract binding protein associated|protein phosphatase 1, regulatory subunit 140" "splicing factor proline/glutamine rich (polypyrimidine tract-binding protein-associated)|splicing factor proline/glutamine-rich" "Protein phosphatase 1 regulatory subunits|RNA binding motif containing" "694|725" 1995-02-22 2016-06-06 2016-06-06 6421 ENSG00000116560 OTTHUMG00000004157 uc001bys.4 X70944 NM_005066 CCDS388 P23246 8449401 MGI:1918764 RGD:727923 SFPQ 605199 326747 +HGNC:10775 SFPQP1 splicing factor proline and glutamine rich pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 SFPQP "splicing factor proline/glutamine rich (polypyrimidine tract-binding protein-associated) pseudogene|splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated) pseudogene" 1999-10-28 2010-04-16 2016-06-06 2016-06-06 23758 ENSG00000224035 OTTHUMG00000036320 NG_002816 PGOHUM00000233958 +HGNC:29574 SFR1 SWI5 dependent homologous recombination repair protein 1 protein-coding gene gene with protein product Approved 10q25.1 10q25.1 "MEI5|bA373N18.1|FLJ41960" "C10orf78|MEIR5" "chromosome 10 open reading frame 78|MEI5 recombination repair protein homolog (S. cerevisiae)|SWI5-dependent recombination repair 1|SWI5-dependent homologous recombination repair protein 1" 2004-02-17 2011-08-01 2016-02-01 2016-02-01 119392 ENSG00000156384 OTTHUMG00000019000 uc001kxu.4 BC020892 NM_145247 "CCDS31279|CCDS31280" Q86XK3 "21252223|21779174|20976249" MGI:1915038 RGD:1305481 SFR1 616527 +HGNC:51531 SFR1P1 SFR1 pseudogene 1 pseudogene pseudogene Approved Xq24 Xq24 2015-02-20 2015-02-20 100130090 ENSG00000227541 OTTHUMG00000022293 NG_022633 PGOHUM00000304822 +HGNC:51532 SFR1P2 SFR1 pseudogene 2 pseudogene pseudogene Approved Xq21.2 Xq21.2 2015-02-20 2015-02-20 730792 ENSG00000223707 OTTHUMG00000021935 NG_022614 PGOHUM00000304730 +HGNC:10776 SFRP1 secreted frizzled related protein 1 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "SARP2|FRP|FRP-1" Secreted frizzled-related proteins 733 1998-07-15 2016-05-04 2016-05-04 6422 ENSG00000104332 OTTHUMG00000164074 uc003xnt.4 AF017987 NM_003012 CCDS34886 Q8N474 "9391078|9192640" MGI:892014 RGD:621074 SFRP1 604156 +HGNC:10777 SFRP2 secreted frizzled related protein 2 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "SARP1|SDF-5|FRP-2" Secreted frizzled-related proteins 733 1998-07-15 2016-05-04 2016-05-04 6423 ENSG00000145423 OTTHUMG00000161559 uc003inv.2 AF017986 NM_003013 CCDS34082 Q96HF1 9391078 MGI:108078 RGD:735163 SFRP2 604157 +HGNC:10778 SFRP4 secreted frizzled related protein 4 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "frpHE|FRP-4|FRPHE" secreted frizzled-related protein 4 Secreted frizzled-related proteins 733 1998-07-15 2016-03-18 2016-03-18 6424 ENSG00000106483 OTTHUMG00000023026 uc003tfo.5 AF026692 NM_003014 CCDS5453 Q6FHJ7 10211996 MGI:892010 RGD:621075 SFRP4 606570 461302 +HGNC:10779 SFRP5 secreted frizzled related protein 5 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 SARP3 secreted apoptosis related protein 3 Secreted frizzled-related proteins 733 1998-07-15 2016-05-04 2016-10-05 6425 ENSG00000120057 OTTHUMG00000018866 uc001kor.5 AF017988 NM_003015 CCDS7472 Q5T4F7 9391078 MGI:1860298 RGD:1310369 SFRP5 604158 +HGNC:10790 SFSWAP splicing factor SWAP homolog protein-coding gene gene with protein product Approved 12q24.33 12q24.33 SWAP SFRS8 "splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot, Drosophila homolog)|splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila)|splicing factor, suppressor of white-apricot homolog (Drosophila)|splicing factor, suppressor of white-apricot homolog" 1995-09-11 2010-09-15 2016-05-04 2016-05-04 6433 ENSG00000061936 OTTHUMG00000168319 uc001uja.3 U08377 NM_004592 "CCDS9273|CCDS58290" Q12872 8940107 MGI:101760 RGD:1305004 SFSWAP 601945 +HGNC:21102 SFT2D1 SFT2 domain containing 1 protein-coding gene gene with protein product Approved 6q27 06q27 "MGC19825|pRGR1" C6orf83 chromosome 6 open reading frame 83 2003-05-19 2005-07-25 2005-07-25 2015-09-08 113402 ENSG00000198818 OTTHUMG00000016001 uc003qux.4 AF041429 NM_145169 CCDS5292 Q8WV19 MGI:1918689 RGD:1359119 SFT2D1 +HGNC:25140 SFT2D2 SFT2 domain containing 2 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "UNQ512|dJ747L4.C1.2" 2005-07-25 2015-09-02 375035 ENSG00000213064 OTTHUMG00000034650 uc001gfk.3 AL035297 NM_199344 CCDS1271 O95562 MGI:1917362 RGD:1310623 SFT2D2 +HGNC:28767 SFT2D3 SFT2 domain containing 3 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 MGC5391 2005-07-25 2015-08-25 84826 ENSG00000173349 OTTHUMG00000131532 uc002tpf.4 NM_032740 CCDS2149 Q587I9 12477932 MGI:1914408 RGD:1561764 SFT2D3 +HGNC:18383 SFTA1P surfactant associated 1, pseudogene pseudogene pseudogene Approved 10p14 10p14 SFTPF surfactant associated protein F 2002-05-01 2008-08-27 2011-04-15 2014-11-19 207107 ENSG00000225383 OTTHUMG00000017660 uc001ikf.1 AY102069 NR_027082 +HGNC:18386 SFTA2 surfactant associated 2 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 SFTPG surfactant associated protein G 2002-05-01 2008-08-26 2008-08-26 2016-10-05 389376 ENSG00000196260 OTTHUMG00000031183 uc003nsf.4 AY102070 NM_205854 CCDS4691 Q6UW10 MGI:3643293 RGD:1303180 SFTA2 +HGNC:18387 SFTA3 surfactant associated 3 protein-coding gene gene with protein product Approved 14q13.3 14q13.3 NANCI SFTPH surfactant associated protein H 2002-05-01 2008-08-26 2008-08-26 2014-06-19 253970 ENSG00000229415 OTTHUMG00000170540 uc001wtr.4 AY102071 NM_001101341 CCDS45097 P0C7M3 SFTA3 +HGNC:10798 SFTPA1 surfactant protein A1 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "SP-A|SP-A1|COLEC4" surfactant, pulmonary-associated protein A1A SFTP1 surfactant, pulmonary-associated protein A1 "Collectins|C-type lectin domain containing" "491|1298" 2001-06-22 2008-08-26 2016-04-25 653509 ENSG00000122852 OTTHUMG00000018565 uc001kar.4 BC026229 NM_005411 "CCDS44444|CCDS44445" Q8IWL2 MGI:109518 RGD:3665 SFTPA1 178630 118633 +HGNC:10799 SFTPA2 surfactant protein A2 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "SP-A2|COLEC5" surfactant, pulmonary-associated protein A2A surfactant, pulmonary-associated protein A2 "Collectins|C-type lectin domain containing" "491|1298" 1997-04-16 2008-08-26 2016-01-15 729238 ENSG00000185303 OTTHUMG00000018566 uc001kal.5 NM_001098668 CCDS41540 Q8IWL1 MGI:109518 SFTPA2 178642 269879 +HGNC:10800 SFTPA3P surfactant protein A3, pseudogene pseudogene pseudogene Approved 10q22.3 10q22.3 COLEC6 "SFTPP1|SFTPAP1" "surfactant, pulmonary-associated protein A pseudogene 1|surfactant protein A pseudogene 1" Collectins 491 1992-09-28 2009-12-02 2009-12-02 2014-11-19 100288405 ENSG00000225827 OTTHUMG00000018568 NG_016155 1827027 +HGNC:10801 SFTPB surfactant protein B protein-coding gene gene with protein product Approved 2p11.2 02p11.2 SP-B SFTP3 surfactant, pulmonary-associated protein B 1988-07-06 2008-08-26 2016-10-05 6439 ENSG00000168878 OTTHUMG00000130181 uc002sqh.4 J02761 NM_198843 CCDS1983 P07988 "2924687|1346779" MGI:109516 RGD:621700 SFTPB 178640 118639 +HGNC:10802 SFTPC surfactant protein C protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "SP-C|PSP-C|SMDP2|BRICD6" BRICHOS domain containing 6 SFTP2 surfactant, pulmonary-associated protein C BRICHOS domain containing 457 1988-05-11 2008-08-26 2016-10-05 6440 ENSG00000168484 OTTHUMG00000163775 uc003xaz.4 NM_003018 "CCDS43722|CCDS55209|CCDS83259" P11686 "1859376|16709565" MGI:109517 RGD:3666 SFTPC 178620 118643 +HGNC:10803 SFTPD surfactant protein D protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "SP-D|COLEC7" SFTP4 surfactant, pulmonary-associated protein D "Collectins|C-type lectin domain containing" "491|1298" 1992-06-26 2008-08-26 2016-10-05 6441 ENSG00000133661 OTTHUMG00000018590 uc001kbh.4 L05485 XM_011540088 CCDS7362 P35247 "1898081|1339284" MGI:109515 RGD:3667 SFTPD 178635 +HGNC:51589 SFTPD-AS1 SFTPD antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2015-03-11 2015-03-11 105419997 ENSG00000273372 OTTHUMG00000186448 AK124605 +HGNC:18388 SFTPI entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-27 +HGNC:16085 SFXN1 sideroflexin 1 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 FLJ12876 Sideroflexins 746 2003-04-25 2016-10-05 94081 ENSG00000164466 OTTHUMG00000130555 uc003mda.3 AF327346 NM_022754 CCDS4394 Q9H9B4 MGI:2137677 RGD:1308482 SFXN1 615569 +HGNC:16086 SFXN2 sideroflexin 2 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 Sideroflexins 746 2001-07-17 2014-11-18 118980 ENSG00000156398 OTTHUMG00000018967 uc001kwb.3 AF462052 XM_058359 CCDS7539 Q96NB2 MGI:2137678 RGD:1306131 SFXN2 615570 +HGNC:16087 SFXN3 sideroflexin 3 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 SFX3 Sideroflexins 746 2004-11-24 2016-10-05 81855 ENSG00000107819 OTTHUMG00000018921 uc001ksp.4 AK074707 NM_030971 CCDS7508 Q9BWM7 MGI:2137679 RGD:620716 SFXN3 615571 +HGNC:16088 SFXN4 sideroflexin 4 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 Sideroflexins 746 2003-04-25 2014-11-18 119559 ENSG00000183605 OTTHUMG00000019147 uc001leb.4 XM_058406 CCDS7610 Q6P4A7 14756423 MGI:2137680 RGD:1306088 SFXN4 615564 392296 +HGNC:16073 SFXN5 sideroflexin 5 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 BBG-TCC Sideroflexins 746 2001-07-27 2016-10-05 94097 ENSG00000144040 OTTHUMG00000129775 uc002siq.3 AY044437 NM_144579 "CCDS1922|CCDS82469" Q8TD22 "12039050|12150972" MGI:2137681 RGD:628706 SFXN5 615572 +HGNC:10764 SF entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-06-07 +HGNC:10805 SGCA sarcoglycan alpha protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "SCARMD1|LGMD2D|adhalin|DMDA2|A2" "50kD DAG|adhalin|limb girdle muscular dystrophy 2D" ADL sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) 1994-12-14 2015-11-13 2016-10-12 6442 ENSG00000108823 OTTHUMG00000162024 uc002iqi.4 L34355 NM_000023 "CCDS32679|CCDS45729" Q16586 7937874 MGI:894698 RGD:1308062 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/SGCA|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SGCA|LRG_203|http://www.lrg-sequence.org/LRG/LRG_203" SGCA 600119 118647 +HGNC:10806 SGCB sarcoglycan beta protein-coding gene gene with protein product Approved 4q12 04q12 "SGC|A3b" LGMD2E sarcoglycan, beta (43kDa dystrophin-associated glycoprotein) 1995-01-24 2015-11-13 2016-10-12 6443 ENSG00000163069 OTTHUMG00000128697 uc003gzj.3 U29586 NM_000232 CCDS3488 Q16585 8968749 MGI:1346523 RGD:1594202 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/SGCB|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SGCB|LRG_204|http://www.lrg-sequence.org/LRG/LRG_204" SGCB 600900 118653 +HGNC:10807 SGCD sarcoglycan delta protein-coding gene gene with protein product Approved 5q33.2-q33.3 05q33.2-q33.3 "DAGD|LGMD2F|CMD1L" sarcoglycan, delta (35kDa dystrophin-associated glycoprotein) 1997-07-22 2015-11-13 2016-10-12 6444 ENSG00000170624 OTTHUMG00000163445 uc003lwc.5 BX537948 XM_017009723 "CCDS47325|CCDS47326|CCDS47327" Q92629 "8776597|8841194|10974018" MGI:1346525 RGD:1306638 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/SGCD|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SGCD|LRG_205|http://www.lrg-sequence.org/LRG/LRG_205" SGCD 601411 118658 +HGNC:10808 SGCE sarcoglycan epsilon protein-coding gene gene with protein product Approved 7q21.3 07q21.3 DYT11 1999-01-11 2015-11-13 2016-10-12 8910 ENSG00000127990 OTTHUMG00000022828 uc003unl.3 AF036364 XM_011516663 "CCDS5637|CCDS47642|CCDS47643|CCDS75634" O43556 "9475163|9405466" MGI:1329042 RGD:1303201 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/SGCE|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SGCE|LRG_206|http://www.lrg-sequence.org/LRG/LRG_206" SGCE 604149 118663 +HGNC:10809 SGCG sarcoglycan gamma protein-coding gene gene with protein product Approved 13q12.12 13q12.12 "SCARMD2|DAGA4|SCG3|DMDA|TYPE|A4|MGC130048" "Maghrebian myopathy (autosomal recessive)|35kD dystrophin-associated glycoprotein|limb girdle muscular dystrophy 2C (Duchenne-like muscular dystrophy, autosomal recessive)|gamma sarcoglycan" "DMDA1|MAM|LGMD2C" sarcoglycan, gamma (35kDa dystrophin-associated glycoprotein) 1997-07-22 2015-11-13 2016-10-12 6445 ENSG00000102683 OTTHUMG00000016563 uc001uom.3 U34976 NM_000231 CCDS9299 Q13326 8968757 MGI:1346524 RGD:1359577 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/SGCG|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SGCG|LRG_207|http://www.lrg-sequence.org/LRG/LRG_207" SGCG 608896 118666 +HGNC:14075 SGCZ sarcoglycan zeta protein-coding gene gene with protein product Approved 8p22 08p22 ZSG1 2002-09-09 2015-11-13 2016-10-12 137868 ENSG00000185053 OTTHUMG00000090827 uc003wwq.4 AY028700 NM_139167 CCDS5992 Q96LD1 12189167 MGI:2388820 RGD:1307788 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SGCZ|LRG_208|http://www.lrg-sequence.org/LRG/LRG_208" SGCZ 608113 +HGNC:25156 SGF29 SAGA complex associated factor 29 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "FLJ32446|TDRD29" SAGA-associated factor 29 homolog (yeast) CCDC101 coiled-coil domain containing 101 "Tudor domain containing|ATAC complex|SAGA complex" "780|1058|1059" 2006-04-03 2015-08-11 2015-08-11 2015-08-11 112869 ENSG00000176476 OTTHUMG00000131763 AK057008 NM_138414 CCDS10635 Q96ES7 "17334388|21685874" MGI:1922815 RGD:1310609 613374 +HGNC:25412 SGIP1 SH3 domain GRB2 like endophilin interacting protein 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 DKFZp761D221 2004-06-01 2016-05-18 2016-05-18 84251 ENSG00000118473 OTTHUMG00000009161 uc001dcr.4 AL136561 NM_032291 "CCDS30744|CCDS76171" Q9BQI5 11230166 MGI:1920344 RGD:1564957 SGIP1 611540 +HGNC:10810 SGK1 serum/glucocorticoid regulated kinase 1 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 SGK serum/glucocorticoid regulated kinase 1997-06-12 2007-12-05 2007-12-05 2016-10-05 6446 ENSG00000118515 OTTHUMG00000015613 uc003qen.5 AJ000512 NM_005627 "CCDS5170|CCDS47476|CCDS47477|CCDS47478|CCDS78184" O00141 "9114008|9722955" MGI:1340062 RGD:3668 SGK1 602958 objectId:1534 +HGNC:13900 SGK2 SGK2, serine/threonine kinase 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 serum/glucocorticoid regulated kinase 2 2000-11-21 2016-04-29 2016-10-12 10110 ENSG00000101049 OTTHUMG00000033054 uc002xku.4 AF169034 NM_016276 "CCDS13320|CCDS13321" Q9HBY8 "10548550|26740304|26392083|15134818" MGI:1351318 RGD:620232 LRG_1050|http://www.lrg-sequence.org/LRG/LRG_1050 SGK2 607589 objectId:1535 2.7.11.1 +HGNC:10812 SGK3 serum/glucocorticoid regulated kinase family member 3 protein-coding gene gene with protein product Approved 8q12 08q12 "SGK2|SGKL" "serum/glucocorticoid regulated kinase-like|serum/glucocorticoid regulated kinase family, member 3" 1999-08-12 2005-09-13 2015-11-18 2015-11-18 23678 ENSG00000104205 OTTHUMG00000164561 uc003xwr.4 NM_013257 "CCDS6195|CCDS6196" Q96BR1 "10585774|10548550" MGI:2182368 RGD:620242 SGK3 607591 objectId:1536 +HGNC:29799 SGMS1 sphingomyelin synthase 1 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 "MOB|MGC17342|SMS1" phosphatidylcholine:ceramide cholinephosphotransferase 1 TMEM23 transmembrane protein 23 Sterile alpha motif domain containing 760 2004-03-23 2007-03-16 2007-03-16 2016-10-05 259230 ENSG00000198964 OTTHUMG00000018231 uc001jje.4 AY280959 NM_147156 CCDS7240 Q86VZ5 "11841947|14976195" MGI:2444110 RGD:727912 SGMS1 611573 objectId:2520 2.7.8.27 +HGNC:49683 SGMS1-AS1 SGMS1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q11.23 10q11.23 2014-02-01 2016-08-17 104355295 ENSG00000226200 OTTHUMG00000018230 NR_126411 24495672 MGI:1914438 +HGNC:28395 SGMS2 sphingomyelin synthase 2 protein-coding gene gene with protein product Approved 4q25 04q25 "MGC26963|SMS2" 2007-03-15 2014-11-19 166929 ENSG00000164023 OTTHUMG00000131811 uc003hyl.6 BC041369 NM_152621 CCDS3677 Q8NHU3 14685263 MGI:1921692 RGD:1305778 SGMS2 611574 objectId:2521 2.7.8.27 +HGNC:25088 SGO1 shugoshin 1 protein-coding gene gene with protein product Approved 3p24.3 03p24.3 NY-BR-85 SGOL1 shugoshin-like 1 (S. pombe) 2004-04-05 2016-03-18 2016-03-18 2016-03-18 151648 ENSG00000129810 OTTHUMG00000130479 uc003cbw.4 BC001339 NM_138484 "CCDS2635|CCDS33716|CCDS46771|CCDS46772|CCDS46773|CCDS46774|CCDS56243" Q5FBB7 12747765 MGI:1919665 RGD:1593238 609168 444785 +HGNC:41081 SGO1-AS1 SGO1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p24.3 03p24.3 SGOL1-AS1 "SGOL1 antisense RNA 1 (non-protein coding)|SGOL1 antisense RNA 1" 2011-07-28 2016-03-18 2016-03-18 2016-10-10 100874028 ENSG00000231304 OTTHUMG00000155532 uc284pts.1 NR_132785 +HGNC:50776 SGO1P1 shugoshin 1 pseudogene 1 pseudogene pseudogene Approved 1p31.1 01p31.1 SGOL1P1 shugoshin-like 1 (S. pombe) pseudogene 1 2014-06-18 2016-03-18 2016-03-18 2016-03-18 100533666 ENSG00000270615 OTTHUMG00000184292 NG_028827 PGOHUM00000244068 +HGNC:50777 SGO1P2 shugoshin 1 pseudogene 2 pseudogene pseudogene Approved 7p12.1 07p12.1 SGOL1P2 shugoshin-like 1 (S. pombe) pseudogene 2 2014-06-18 2016-03-18 2016-03-18 2016-03-18 100533661 ENSG00000234304 OTTHUMG00000155992 NG_028667 PGOHUM00000232695 +HGNC:30812 SGO2 shugoshin 2 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "TRIPIN|FLJ25211" SGOL2 shugoshin-like 2 (S. pombe) 2004-04-05 2016-03-18 2016-03-18 2016-10-05 151246 ENSG00000163535 OTTHUMG00000154535 uc002uvw.3 AY094614 NM_152524 CCDS42796 Q562F6 MGI:1098767 RGD:1308450 612425 +HGNC:10817 SGPL1 sphingosine-1-phosphate lyase 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 SPL 1999-02-03 2016-10-05 8879 ENSG00000166224 OTTHUMG00000018421 uc001jrm.4 AI128825 NM_003901 CCDS31216 O95470 "9464245|17090686" MGI:1261415 RGD:628599 SGPL1 603729 objectId:2522 +HGNC:17720 SGPP1 sphingosine-1-phosphate phosphatase 1 protein-coding gene gene with protein product Approved 14q23.2 14q23.2 Sphingosine-1-phosphate phosphatases 1070 2003-01-24 2016-10-05 81537 ENSG00000126821 OTTHUMG00000029080 uc001xgj.5 AJ293294 NM_030791 CCDS9760 Q9BX95 10859351 MGI:2135760 RGD:727829 SGPP1 612826 objectId:2523 +HGNC:19953 SGPP2 sphingosine-1-phosphate phosphatase 2 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "SPP2|FLJ39004" Sphingosine-1-phosphate phosphatases 1070 2003-02-12 2010-05-26 2016-10-05 130367 ENSG00000163082 OTTHUMG00000133156 uc010zlo.3 AF542512 NM_152386 CCDS2453 Q8IWX5 12411432 MGI:3589109 RGD:1565739 SGPP2 612827 objectId:2524 +HGNC:10818 SGSH N-sulfoglucosamine sulfohydrolase protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "HSS|MPS3A|SFMD" "sulfamidase|mucopolysaccharidosis type IIIA" Sulfatases 410 1997-06-24 2008-07-31 2015-09-02 6448 ENSG00000181523 OTTHUMG00000177569 uc002jxz.5 BC047318 NM_000199 CCDS11770 P51688 7493035 MGI:1350341 RGD:1591134 SGSH 605270 118674 3.10.1.1 +HGNC:29410 SGSM1 small G protein signaling modulator 1 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 KIAA1941 RUTBC2 RUN and TBC1 domain containing 2 Small G protein signaling modulators 751 2004-02-27 2007-08-14 2007-08-14 2013-07-09 129049 ENSG00000167037 OTTHUMG00000150837 uc003abg.3 AB075821 XM_059318 "CCDS46674|CCDS46675|CCDS74834" Q2NKQ1 "11853319|17509819|22637480" MGI:107320 RGD:1308178 SGSM1 611417 +HGNC:29026 SGSM2 small G protein signaling modulator 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 KIAA0397 RUTBC1 RUN and TBC1 domain containing 1 Small G protein signaling modulators 751 2004-02-27 2007-08-14 2007-08-14 2014-11-19 9905 ENSG00000141258 OTTHUMG00000177637 uc002fum.5 BC039204 NM_014853 "CCDS32526|CCDS45570" O43147 "9455477|17509819|21808068" MGI:2144695 RGD:1306957 SGSM2 611418 +HGNC:25228 SGSM3 small G protein signaling modulator 3 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "DJ1042K10.2|RUSC3|RabGAP-5|RABGAP5" RUN and SH3 containing 3 RUTBC3 RUN and TBC1 domain containing 3 Small G protein signaling modulators 751 2004-02-27 2007-08-14 2007-08-14 2016-10-05 27352 ENSG00000100359 OTTHUMG00000151141 uc003ayu.2 AL022238 NM_015705 CCDS14002 Q96HU1 "11214971|17509819" MGI:1916329 RGD:735113 SGSM3 610440 +HGNC:10819 SGTA small glutamine rich tetratricopeptide repeat containing alpha protein-coding gene gene with protein product Approved 19p13 19p13 SGT "small glutamine-rich tetratricopeptide repeat (TPR)-containing|small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha" Tetratricopeptide repeat domain containing 769 1998-03-24 2003-11-26 2016-01-28 2016-01-28 6449 ENSG00000104969 OTTHUMG00000180474 uc002lwi.2 AJ223828 NM_003021 CCDS12094 O43765 "9740675|12735788" MGI:1098703 RGD:620815 SGTA 603419 +HGNC:23567 SGTB small glutamine rich tetratricopeptide repeat containing beta protein-coding gene gene with protein product Approved 5q12.3 05q12.3 "Sgt2|FLJ39002" small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta Tetratricopeptide repeat domain containing 769 2003-11-24 2016-01-28 2016-01-28 54557 ENSG00000197860 OTTHUMG00000097801 uc003jud.4 AK096321 NM_019072 CCDS3988 Q96EQ0 12477932 MGI:2444615 RGD:727976 SGTB +HGNC:30417 SH2B1 SH2B adaptor protein 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "FLJ30542|SH2B" SH2-B homolog "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 2006-07-04 2014-11-19 25970 ENSG00000178188 OTTHUMG00000176590 uc002drm.4 AK055104 NM_015503 "CCDS32424|CCDS53996|CCDS53997|CCDS76851" Q9NRF2 "11827956|10594240" MGI:1201407 RGD:620132 SH2B1 608937 293315 +HGNC:17381 SH2B2 SH2B adaptor protein 2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 APS adaptor protein with pleckstrin homology and src "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 2006-07-04 2013-02-14 10603 ENSG00000160999 OTTHUMG00000150652 uc033aba.2 AB000520 NM_020979 CCDS78264 O14492 9233773 MGI:1345171 RGD:69284 SH2B2 605300 +HGNC:29605 SH2B3 SH2B adaptor protein 3 protein-coding gene gene with protein product Approved 12q24.12 12q24.12 "LNK|IDDM20" lymphocyte adaptor protein "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 2006-07-04 2016-10-12 10019 ENSG00000111252 OTTHUMG00000169550 uc001tse.3 AF055581 NM_005475 "CCDS9153|CCDS76602" Q9UQQ2 10799879 MGI:893598 RGD:68411 LRG_621|http://www.lrg-sequence.org/LRG/LRG_621 SH2B3 605093 394580 +HGNC:10820 SH2D1A SH2 domain containing 1A protein-coding gene gene with protein product Approved Xq25 Xq25 "XLP|MTCP1|DSHP|XLPD|EBVS|SAP" Duncan's disease "IMD5|LYP" "lymphoproliferative syndrome|SH2 domain protein 1A" SH2 domain containing 741 1989-06-30 2010-04-21 2016-10-12 4068 ENSG00000183918 OTTHUMG00000022344 uc004euf.6 AL023657 NM_002351 "CCDS14608|CCDS48162" O60880 "9771704|9774102" MGI:1328352 RGD:1562408 "SH2D1Abase: Mutation registry for X-linked lymphoproliferative syndrome (XLP)|http://structure.bmc.lu.se/idbase/SH2D1Abase/|LRG_106|http://www.lrg-sequence.org/LRG/LRG_106" SH2D1A 300490 118679 +HGNC:30416 SH2D1B SH2 domain containing 1B protein-coding gene gene with protein product Approved 1q23.3 01q23.3 EAT2 SH2 domain containing 741 2005-05-09 2015-09-02 117157 ENSG00000198574 OTTHUMG00000031377 uc001gbz.2 AF484964 NM_053282 CCDS30928 O14796 "9000139|11689425" "MGI:1349420|MGI:3622649" RGD:1563935 SH2D1B 608510 +HGNC:10821 SH2D2A SH2 domain containing 2A protein-coding gene gene with protein product Approved 1q23.1 01q23.1 "TSAd|F2771" "T lymphocyte specific adaptor protein|T cell specific adapter protein TSAd|T cell specific adpater protein TSAd" SH2 domain protein 2A SH2 domain containing 741 1998-11-19 2010-04-21 2016-10-05 9047 ENSG00000027869 OTTHUMG00000041305 uc001fqd.3 AJ000553 NM_003975 "CCDS1159|CCDS53380|CCDS53381" Q9NP31 9468509 MGI:1351596 RGD:1303076 SH2D2A 604514 +HGNC:16885 SH2D3A SH2 domain containing 3A protein-coding gene gene with protein product Approved 19p13.3 19p13.3 NSP1 SH2 domain-containing 3A SH2 domain containing 741 2001-11-19 2002-01-14 2014-11-19 10045 ENSG00000125731 OTTHUMG00000181868 uc002mft.4 AF124249 NM_005490 CCDS12173 Q9BRG2 10187783 RGD:2322080 SH2D3A 604721 +HGNC:16884 SH2D3C SH2 domain containing 3C protein-coding gene gene with protein product Approved 9q34.11 09q34.11 NSP3 SH2 domain-containing 3C SH2 domain containing 741 2001-11-19 2002-01-14 2016-10-05 10044 ENSG00000095370 OTTHUMG00000020717 uc004bsc.4 AF124251 NM_005489 "CCDS6877|CCDS6878|CCDS48026|CCDS48028|CCDS59145|CCDS48027" Q8N5H7 10187783 MGI:1351631 RGD:1307287 SH2D3C 604722 +HGNC:26102 SH2D4A SH2 domain containing 4A protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "FLJ20967|SH2A|PPP1R38" protein phosphatase 1, regulatory subunit 38 "Protein phosphatase 1 regulatory subunits|SH2 domain containing" "694|741" 2004-04-16 2016-10-05 63898 ENSG00000104611 OTTHUMG00000097005 uc003wzb.4 AY190323 NM_022071 "CCDS6009|CCDS55206" Q9H788 MGI:1919531 RGD:1307991 SH2D4A 614968 +HGNC:31440 SH2D4B SH2 domain containing 4B protein-coding gene gene with protein product Approved 10q23.1 10q23.1 SH2 domain containing 741 2004-04-16 2014-11-19 387694 ENSG00000178217 OTTHUMG00000018617 uc001kck.1 XM_351984 "CCDS7370|CCDS44449" Q5SQS7 MGI:1925182 RGD:1311591 SH2D4B +HGNC:28819 SH2D5 SH2 domain containing 5 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 2005-08-08 2014-11-19 400745 ENSG00000189410 OTTHUMG00000002620 uc009vpy.2 "AK124869|AK123236" XM_375698 "CCDS41280|CCDS44080" Q6ZV89 MGI:2446215 RGD:1305952 SH2D5 +HGNC:30439 SH2D6 SH2 domain containing 6 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 FLJ35993 SH2 domain containing 741 2006-08-24 2014-11-19 284948 ENSG00000152292 OTTHUMG00000130176 uc002spq.3 AF450483 NM_198482 Q7Z4S9 12477932 MGI:1918380 RGD:1587427 SH2D6 +HGNC:34549 SH2D7 SH2 domain containing 7 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 LOC646892 SH2 domain containing 741 2008-10-15 2014-11-19 646892 ENSG00000183476 OTTHUMG00000154271 uc010blb.2 NM_001101404 CCDS45315 A6NKC9 MGI:2441692 RGD:1309791 SH2D7 +HGNC:10822 SH3BGR SH3 domain binding glutamate rich protein protein-coding gene gene with protein product Approved 21q22.2 21q22.2 21-GARP 21-glutamic acid-rich protein "SH3 domain binding glutamic acid-rich protein|SH3 domain binding glutamate-rich protein" 1996-10-11 2016-01-29 2016-10-05 6450 ENSG00000185437 OTTHUMG00000074113 uc002yya.4 NM_007341 "CCDS13666|CCDS33560|CCDS82675" P55822 9050928 MGI:1354740 RGD:1563599 SH3BGR 602230 +HGNC:10823 SH3BGRL SH3 domain binding glutamate rich protein like protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 MGC117402 SH3 domain binding glutamic acid-rich protein like 1998-01-21 2016-01-29 2016-10-05 6451 ENSG00000131171 OTTHUMG00000021910 uc004eef.4 AF042081 NM_003022 CCDS14449 O75368 9642120 MGI:1930849 RGD:1560520 SH3BGRL 300190 +HGNC:15567 SH3BGRL2 SH3 domain binding glutamate rich protein like 2 protein-coding gene gene with protein product Approved 6q14.1 06q14.1 SH3 domain binding glutamic acid-rich protein like 2 2001-04-26 2016-01-29 2016-01-29 83699 ENSG00000198478 OTTHUMG00000015081 uc003piz.2 AJ297972 XM_011536282 CCDS4991 Q9UJC5 12095696 MGI:1915350 RGD:1591931 SH3BGRL2 615678 +HGNC:15568 SH3BGRL3 SH3 domain binding glutamate rich protein like 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 SH3 domain binding glutamic acid-rich protein like 3 2001-04-26 2016-01-29 2016-01-29 83442 ENSG00000142669 OTTHUMG00000003381 uc001blu.4 AJ297915 NM_031286 CCDS278 Q9H299 MGI:1920973 RGD:1308118 SH3BGRL3 615679 +HGNC:10824 SH3BP1 SH3 domain binding protein 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 ARHGAP43 "Rho GTPase activating proteins|N-BAR domain containing" "721|1289" 1999-10-19 2016-04-28 2016-04-28 23616 ENSG00000100092 OTTHUMG00000030996 uc003ati.4 NM_018957 CCDS13952 Q9Y3L3 "10591208|12029088" MGI:104603 RGD:1306275 SH3BP1 +HGNC:10825 SH3BP2 SH3 domain binding protein 2 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "RES4-23|CRBM" Cherubism "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 1996-08-01 2016-04-28 2016-04-28 6452 ENSG00000087266 OTTHUMG00000160801 uc003gfi.5 BC022996 NM_003023 "CCDS33944|CCDS54715|CCDS54716" P78314 "9299232|11381256" MGI:1346349 RGD:1310588 SH3BP2 602104 118689 +HGNC:10826 SH3BP4 SH3 domain binding protein 4 protein-coding gene gene with protein product Approved 2q37.2 02q37.2 1999-08-26 2016-04-28 2016-10-05 23677 ENSG00000130147 OTTHUMG00000133292 uc002vvp.4 AF147747 XM_011510891 CCDS2513 Q9P0V3 10644451 MGI:2138297 RGD:620219 SH3BP4 605611 +HGNC:10827 SH3BP5 SH3 domain binding protein 5 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 Sab SH3 binding protein SH3-domain binding protein 5 (BTK-associated) 1999-09-07 2016-04-28 2016-10-05 9467 ENSG00000131370 OTTHUMG00000129859 uc003bzp.3 AB005047 NM_004844 "CCDS2625|CCDS43055" O60239 "9571151|10339589" MGI:1344391 RGD:620220 SH3BP5 605612 +HGNC:44501 SH3BP5-AS1 SH3BP5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.1 03p25.1 2012-11-12 2012-11-12 100505696 ENSG00000224660 OTTHUMG00000155575 uc003bzo.3 NR_046084 +HGNC:29360 SH3BP5L SH3 binding domain protein 5 like protein-coding gene gene with protein product Approved 1q44 01q44 KIAA1720 2005-07-29 2016-04-28 2016-04-28 80851 ENSG00000175137 OTTHUMG00000040389 uc001iew.2 AB051507 NM_030645 CCDS31126 Q7L8J4 MGI:1933124 RGD:1590939 SH3BP5L +HGNC:30418 SH3D19 SH3 domain containing 19 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "DKFZp434D0215|EVE1|EBP|Kryn|SH3P19" EEN binding protein 2008-02-18 2009-03-05 2009-03-05 2014-11-19 152503 ENSG00000109686 OTTHUMG00000154051 uc010ipl.1 BX647422 NM_001009555 "CCDS34077|CCDS47143|CCDS47144" Q5HYK7 12477932 MGI:1350923 RGD:1304885 SH3D19 608674 +HGNC:26236 SH3D21 SH3 domain containing 21 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ22938 C1orf113 chromosome 1 open reading frame 113 2005-06-08 2011-02-21 2011-02-21 2016-04-25 79729 ENSG00000214193 OTTHUMG00000007868 uc010oia.2 AK056459 NM_024676 CCDS30674 A4FU49 12477932 MGI:1914188 RGD:1305090 SH3D21 +HGNC:10830 SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "SH3P8|SH3D2B|CNSA1|EEN|MGC111371" "extra 11-19 leukemia fusion|fusion partner of MLL|SH3-containing Grb-2-like 1 protein|SH3-containing protein EEN|SH3 domain GRB2-like 1|endophilin A2" "SH3-domain GRB2-like 1|SH3 domain containing GRB2 like 1" N-BAR domain containing 1289 1996-10-26 2016-05-18 2016-05-18 6455 ENSG00000141985 OTTHUMG00000181918 uc002maj.4 NM_003025 "CCDS32874|CCDS56076|CCDS59335" Q99961 9169142 MGI:700010 RGD:708456 SH3GL1 601768 +HGNC:10835 SH3GL1P1 SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 CNSA-P1 SH3GLP1 "SH3-domain GRB2-like pseudogene 1|SH3 domain containing GRB2 like 1 pseudogene 1" 1996-10-26 2009-12-03 2016-05-18 2016-05-18 6458 ENSG00000266777 OTTHUMG00000179459 X99658 NG_006135.2 9169142 +HGNC:10836 SH3GL1P2 SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 2 pseudogene pseudogene Approved 17q11.2 17q11.2 CNSA-P2 SH3GLP2 "SH3-domain GRB2-like pseudogene 2|SH3 domain containing GRB2 like 1 pseudogene 2" 1996-10-26 2009-12-03 2016-05-18 2016-05-18 6459 ENSG00000264943 OTTHUMG00000178988 X99661 NR_033420 9169142 PGOHUM00000237347 +HGNC:10837 SH3GL1P3 SH3 domain containing GRB2 like 1, endophilin A2 pseudogene 3 pseudogene pseudogene Approved 17q24.2 17q24.2 CNSA-P3 SH3GLP3 "SH3-domain GRB2-like pseudogene 3|SH3 domain containing GRB2 like 1 pseudogene 3" 1996-10-26 2009-12-03 2016-05-18 2016-05-18 727736 ENSG00000267352 OTTHUMG00000180161 X99662 NG_011727 9169142 PGOHUM00000237166 +HGNC:10831 SH3GL2 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding gene gene with protein product Approved 9p22.2 09p22.2 "SH3P4|SH3D2A|CNSA2|EEN-B1" endophilin-A1 SH3 domain containing GRB2 like 2 N-BAR domain containing 1289 1996-10-26 2016-06-13 2016-10-05 6456 ENSG00000107295 OTTHUMG00000019601 uc003zna.4 X99657 NM_003026 CCDS6483 Q99962 9169142 MGI:700009 RGD:620276 SH3GL2 604465 +HGNC:10832 SH3GL3 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "SH3D2C|SH3P13|CNSA3|EEN-B2|HsT19371" endophilin A3 SH3 domain containing GRB2 like 3 N-BAR domain containing 1289 1996-10-26 2016-06-13 2016-10-05 6457 ENSG00000140600 OTTHUMG00000147361 uc002bjw.4 AF036271 NM_003027 "CCDS10325|CCDS73772" Q99963 9169142 MGI:700011 RGD:620578 SH3GL3 603362 +HGNC:10833 SH3GLB1 SH3 domain containing GRB2 like endophilin B1 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "CGI-61|KIAA0491|Bif-1|PPP1R70" protein phosphatase 1, regulatory subunit 70 SH3-domain, GRB2-like, endophilin B1 "Protein phosphatase 1 regulatory subunits|N-BAR domain containing" "694|1289" 2000-07-31 2016-04-28 2016-04-28 51100 ENSG00000097033 OTTHUMG00000010257 uc001dlw.4 AF263293 NM_016009 "CCDS710|CCDS55612|CCDS55613|CCDS72819" Q9Y371 "11161816|11259440" MGI:1859730 RGD:1304859 SH3GLB1 609287 +HGNC:10834 SH3GLB2 SH3 domain containing GRB2 like endophilin B2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 KIAA1848 SH3-domain, GRB2-like, endophilin B2 N-BAR domain containing 1289 2000-07-31 2016-04-28 2016-10-05 56904 ENSG00000148341 OTTHUMG00000020769 uc004bwv.5 AF257319 NM_020145 "CCDS6916|CCDS69680" Q9NR46 11161816 MGI:2385131 RGD:1305886 SH3GLB2 609288 +HGNC:13867 SH3KBP1 SH3 domain containing kinase binding protein 1 protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 CIN85 2000-12-14 2016-04-28 2016-10-05 30011 ENSG00000147010 OTTHUMG00000021227 uc004czm.4 AF230904 NM_031892 "CCDS14193|CCDS35213|CCDS55383" Q96B97 "8889549|7566098" MGI:1889583 RGD:620904 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SH3KBP1 SH3KBP1 300374 +HGNC:23664 SH3PXD2A SH3 and PX domains 2A protein-coding gene gene with protein product Approved 10q24.33 10q24.33 "FISH|KIAA0418" five SH3 domains SH3MD1 SH3 multiple domains 1 2003-12-01 2006-02-13 2006-02-13 2016-10-05 9644 ENSG00000107957 OTTHUMG00000018997 uc001kxj.2 AB007878 NM_014631 CCDS31278 Q5TCZ1 9687503 MGI:1298393 RGD:1311185 SH3PXD2A +HGNC:45242 SH3PXD2A-AS1 SH3PXD2A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q24.33 10q24.33 2013-03-11 2013-03-11 100505839 ENSG00000280693 OTTHUMG00000189516 uc057vto.1 AK056784 NR_038940 +HGNC:29242 SH3PXD2B SH3 and PX domains 2B protein-coding gene gene with protein product Approved 5q35.1 05q35.1 FLJ20831 KIAA1295 KIAA1295 2004-04-16 2006-02-13 2006-02-13 2016-10-05 285590 ENSG00000174705 OTTHUMG00000163280 uc003mbr.3 AK095834 NM_017963 "CCDS34291|CCDS78084" A1X283 10718198 MGI:2442062 RGD:1309926 SH3PXD2B 613293 225343 +HGNC:17650 SH3RF1 SH3 domain containing ring finger 1 protein-coding gene gene with protein product Approved 4q32.3-q33 04q32.3-q33 "POSH|RNF142|KIAA1494" plenty of SH3 domains SH3MD2 SH3 multiple domains 2 Ring finger proteins 58 2003-12-01 2006-02-13 2006-02-13 2016-10-11 57630 ENSG00000154447 OTTHUMG00000161010 uc003isa.2 BC033203 NM_020870 CCDS34099 Q7Z6J0 9482736 MGI:1913066 RGD:735154 SH3RF1 +HGNC:26299 SH3RF2 SH3 domain containing ring finger 2 protein-coding gene gene with protein product Approved 5q32 05q32 "FLJ23654|RNF158|Hepp1|POSHER" "heart protein phosphatase 1-binding protein|POSH-eliminating RING protein" PPP1R39 protein phosphatase 1, regulatory subunit 39 "Ring finger proteins|Protein phosphatase 1 regulatory subunits" "58|694" 2004-03-05 2011-11-04 2011-11-04 2014-11-19 153769 ENSG00000156463 OTTHUMG00000129685 uc011dbl.2 AL833297 NM_152550 CCDS4280 Q8TEC5 22128169 MGI:2444628 RGD:1308415 SH3RF2 613377 +HGNC:24699 SH3RF3 SH3 domain containing ring finger 3 protein-coding gene gene with protein product Approved 2q13 02q13 "FLJ00204|POSH2" SH3MD4 SH3 multiple domains 4 Ring finger proteins 58 2004-03-05 2008-05-14 2008-05-14 2015-09-02 344558 ENSG00000172985 OTTHUMG00000153439 uc010ywt.2 AK074131 NM_001099289 CCDS74557 Q8TEJ3 16374509 MGI:2444637 RGD:1589772 SH3RF3 +HGNC:44168 SH3RF3-AS1 SH3RF3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q13 02q13 SH3RF3 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2016-10-05 100287216 ENSG00000259863 OTTHUMG00000153437 uc061mta.1 NR_029193 +HGNC:26009 SH3TC1 SH3 domain and tetratricopeptide repeats 1 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 FLJ20356 Tetratricopeptide repeat domain containing 769 2004-01-08 2015-09-02 54436 ENSG00000125089 OTTHUMG00000160934 uc003gkv.5 AK074093 NM_018986 CCDS3399 Q8TE82 MGI:2678949 RGD:1305610 SH3TC1 +HGNC:29427 SH3TC2 SH3 domain and tetratricopeptide repeats 2 protein-coding gene gene with protein product Approved 5q32 05q32 "KIAA1985|CMT4C" Tetratricopeptide repeat domain containing 769 2004-12-15 2016-10-12 79628 ENSG00000169247 OTTHUMG00000129930 uc003lpu.4 AK127248 NM_024577 CCDS4293 Q8TF17 14574644 MGI:2444417 RGD:1309038 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_269|http://www.lrg-sequence.org/LRG/LRG_269" SH3TC2 608206 118693 +HGNC:29546 SH3YL1 SH3 and SYLF domain containing 1 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 "Ray|DKFZP586F1318" SH3 domain containing, Ysc84-like 1 (S. cerevisiae) 2004-01-05 2013-10-18 2016-04-25 26751 ENSG00000035115 OTTHUMG00000151359 uc061fxl.1 NM_015677 "CCDS42646|CCDS54332|CCDS62841|CCDS62842" Q96HL8 21624956 MGI:1346118 RGD:1306440 SH3YL1 +HGNC:15474 SHANK1 SH3 and multiple ankyrin repeat domains 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "SSTRIP|SPANK-1|synamon" somatostatin receptor-interacting protein "Ankyrin repeat domain containing|Sterile alpha motif domain containing|PDZ domain containing" "403|760|1220" 2002-02-22 2016-10-05 50944 ENSG00000161681 OTTHUMG00000137380 uc002psx.1 AF163302 NM_016148 CCDS12799 Q9Y566 10551867 MGI:3613677 RGD:621011 SHANK1 604999 +HGNC:14295 SHANK2 SH3 and multiple ankyrin repeat domains 2 protein-coding gene gene with protein product Approved 11q13.3-q13.4 11q13.3-q13.4 "CTTNBP1|ProSAP1|SHANK|SPANK-3" CORTBP1 cortactin binding protein 1 "Ankyrin repeat domain containing|Sterile alpha motif domain containing|PDZ domain containing" "403|760|1220" 2002-02-22 2016-10-11 22941 ENSG00000162105 OTTHUMG00000154615 uc058etp.1 AF141901 NM_012309 CCDS76448 Q9UPX8 10506216 MGI:2671987 RGD:628772 SHANK2 603290 391835 +HGNC:40014 SHANK2-AS1 SHANK2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q13.4 11q13.4 SHANK2 antisense RNA 1 (non-protein coding) 2011-04-28 2012-08-15 2014-11-19 100874198 ENSG00000226627 OTTHUMG00000154610 uc001oqe.1 NR_046567 +HGNC:40015 SHANK2-AS2 SHANK2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 11q13.4 11q13.4 SHANK2 antisense RNA 2 (non-protein coding) 2011-04-28 2012-08-15 2014-11-18 100874199 ENSG00000236262 OTTHUMG00000152738 uc058etw.1 +HGNC:25098 SHANK2-AS3 SHANK2 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 11q13.4 11q13.4 C11orf76 "chromosome 11 open reading frame 76|SHANK2 antisense RNA 3 (non-protein coding)" 2006-03-17 2011-04-28 2012-08-15 2014-11-19 220070 ENSG00000171671 OTTHUMG00000150217 uc009yso.5 BC004224 NR_073536 Q9BTD1 12477932 SHANK2-AS3 +HGNC:14294 SHANK3 SH3 and multiple ankyrin repeat domains 3 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "SPANK-2|prosap2|KIAA1650|PSAP2" "proline rich synapse associated protein 2|shank postsynaptic density protein" "Ankyrin repeat domain containing|Sterile alpha motif domain containing|PDZ domain containing" "403|760|1220" 2002-02-22 2016-10-05 85358 ENSG00000251322 OTTHUMG00000150169 uc062fon.2 AB051437 NM_001080420 Q9BYB0 "11258795|11431708|10806096|17173049" MGI:1930016 RGD:69264 SHANK3 606230 118697 +HGNC:25321 SHARPIN SHANK associated RH domain interactor protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "DKFZP434N1923|SIPL1" Zinc fingers RANBP2-type 89 2005-08-09 2015-11-20 2015-11-20 81858 ENSG00000179526 OTTHUMG00000165243 uc003zba.4 AL136816 NM_030974 CCDS43777 Q9H0F6 "11178875|12753155" MGI:1913331 RGD:631353 SHARPIN 611885 +HGNC:10838 SHB SH2 domain containing adaptor protein B protein-coding gene gene with protein product Approved 9p13.1 09p13.1 "SHB adaptor protein (a Src homology 2 protein)|SHB (Src homology 2 domain containing) adaptor protein B|Src homology 2 domain containing adaptor protein B" SH2 domain containing 741 1994-09-15 2016-04-11 2016-10-05 6461 ENSG00000107338 OTTHUMG00000019936 uc004aax.4 NM_003028 CCDS43806 Q15464 7713524 MGI:98294 RGD:1565350 SHB 600314 +HGNC:10839 SHBG sex hormone binding globulin protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "ABP|TEBG|MGC126834|MGC138391" androgen binding protein sex hormone-binding globulin 1990-03-14 2016-04-04 2016-04-04 6462 ENSG00000129214 OTTHUMG00000108153 uc002gie.4 NM_001040 "CCDS11117|CCDS54082|CCDS54083|CCDS58513|CCDS73961|CCDS73962" P04278 2587256 MGI:98295 RGD:3671 SHBG 182205 +HGNC:10840 SHC1 SHC adaptor protein 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "p66|ShcA" SHC SHC (Src homology 2 domain-containing) transforming protein 1 SH2 domain containing 741 1993-02-17 2016-05-16 2016-10-05 6464 ENSG00000160691 OTTHUMG00000037295 uc001ffx.4 U73377 NM_183001 "CCDS1076|CCDS30881|CCDS44233|CCDS44234" P29353 1623525 MGI:98296 RGD:620446 SHC1 600560 +HGNC:10841 SHC1P1 SHC adaptor protein 1 pseudogene 1 pseudogene pseudogene Approved Xq11.2 Xq11.2 SHC (Src homology 2 domain-containing) transforming protein 1 pseudogene 1 1997-05-09 2016-05-16 2016-10-05 6465 ENSG00000230889 OTTHUMG00000021706 Y09846 NG_001195 9192859 PGOHUM00000241811 +HGNC:10842 SHC1P2 SHC adaptor protein 1 pseudogene 2 pseudogene pseudogene Approved 17q21-q22 17q21-q22 SHCL1 SHC (Src homology 2 domain-containing) transforming protein-like 1 1994-09-15 2010-10-27 2016-05-16 2016-05-16 6466 ENSG00000267691 OTTHUMG00000181814 NG_004765 7635484 600739 PGOHUM00000237082 +HGNC:29869 SHC2 SHC adaptor protein 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "SLI|SCK|SHCB" neuronal Shc adaptor homolog SHC (Src homology 2 domain containing) transforming protein 2 SH2 domain containing 741 2004-03-18 2016-05-16 2016-05-16 25759 ENSG00000129946 OTTHUMG00000180545 uc002loq.4 AB001451 XM_011527893 CCDS45891 P98077 "7527937|9507002" MGI:106180 RGD:1307137 SHC2 605217 +HGNC:18181 SHC3 SHC adaptor protein 3 protein-coding gene gene with protein product Approved 9q22.1 09q22.1 "N-Shc|NSHC|SHCC" "src homology 2 domain containing transforming protein C3|SHC (Src homology 2 domain containing) transforming protein 3" SH2 domain containing 741 2003-11-12 2016-05-16 2016-05-16 53358 ENSG00000148082 OTTHUMG00000020179 uc004aqf.2 D84361 NM_016848 CCDS6681 Q92529 8808684 MGI:106179 RGD:69348 SHC3 605263 +HGNC:16743 SHC4 SHC adaptor protein 4 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "RaLP|SHCD" rai-like protein SHC (Src homology 2 domain containing) family, member 4 SH2 domain containing 741 2005-11-07 2016-05-16 2016-10-05 399694 ENSG00000185634 OTTHUMG00000131513 uc001zxb.2 AY358250 NM_203349 CCDS10130 Q6S5L8 MGI:2655364 RGD:1583644 SHC4 +HGNC:29547 SHCBP1 SHC binding and spindle associated 1 protein-coding gene gene with protein product Approved 16q11.2 16q11.2 "FLJ22009|PAL" Protein expressed in Activated Lymphocytes SHC SH2-domain binding protein 1 2004-06-22 2016-04-22 2016-10-05 79801 ENSG00000171241 OTTHUMG00000132540 uc002eec.5 AK055931 NM_024745 CCDS10720 Q8NEM2 "10086341|25486361" MGI:1338802 RGD:1590844 SHCBP1 611027 +HGNC:16788 SHCBP1L SHC binding and spindle associated 1 like protein-coding gene gene with protein product Approved 1q25.3 01q25.3 C1orf14 "chromosome 1 open reading frame 14|SHC SH2-domain binding protein 1-like" 2001-10-08 2011-01-24 2016-04-22 2016-10-05 81626 ENSG00000157060 OTTHUMG00000035419 uc001gpu.4 AF288397 NM_030933 CCDS30955 Q9BZQ2 "11318611|24557841" MGI:1919086 RGD:1305609 SHCBP1L +HGNC:30633 SHD Src homology 2 domain containing transforming protein D protein-coding gene gene with protein product Approved 19p13.3 19p13.3 SH2 domain containing 741 2005-05-24 2015-08-25 56961 ENSG00000105251 OTTHUMG00000181879 uc002lzw.3 BC007206 NM_020209 CCDS12125 Q96IW2 9315092 MGI:1099461 RGD:1590885 SHD 610481 +HGNC:27004 SHE Src homology 2 domain containing E protein-coding gene gene with protein product Approved 1q21.3 01q21.3 SH2 domain containing 741 2005-05-24 2015-08-25 126669 ENSG00000169291 OTTHUMG00000036072 uc001ffb.4 AK074067 NM_001010846 CCDS30877 Q5VZ18 9315092 MGI:1099462 RGD:1583215 SHE 610482 +HGNC:25116 SHF Src homology 2 domain containing F protein-coding gene gene with protein product Approved 15q21.1 15q21.1 SH2 domain containing 741 2005-05-24 2015-08-25 90525 ENSG00000138606 OTTHUMG00000131353 uc001zuy.3 BC007586 NM_138356 "CCDS10120|CCDS73721|CCDS76749|CCDS76750" Q7M4L6 11095946 MGI:3613669 RGD:1562705 SHF +HGNC:10845 SHFM1 split hand/foot malformation (ectrodactyly) type 1 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "DSS1|Shfdg1|ECD|SEM1|SHSF1" deleted in split-hand/foot 1 SHFD1 Transcription and export complex 2 1276 1991-08-20 2014-11-18 7979 ENSG00000127922 OTTHUMG00000150680 uc003uoi.4 U41515 NM_006304 CCDS5646 P60896 "1895319|8733122" MGI:109238 RGD:1590628 SHFM1 601285 138681 +HGNC:24454 SHFM1P1 split hand/foot malformation (ectrodactyly) type 1 pseudogene 1 pseudogene pseudogene Approved 5q14.1 05q14.1 DSS1P1 deleted in split hand/split foot 1 pseudogene SHFM1P split hand/foot malformation (ectrodactyly) type 1 pseudogene 2007-07-26 2010-04-22 2010-04-22 2010-04-22 153842 ENSG00000214857 OTTHUMG00000162556 U61847 NG_001311 9060422 +HGNC:10846 SHFM2 split hand/foot malformation (ectrodactyly) type 2 phenotype phenotype only Approved Xq26 Xq26 SHSF2 SHFD2 1993-12-13 2008-07-28 6463 8454282 313350 +HGNC:35421 SHFM5 split hand/foot malformation (ectrodactyly) type 5 phenotype phenotype only Approved 2q31 02q31 2008-11-27 2011-02-10 171157 11778160 606708 +HGNC:10848 SHH sonic hedgehog protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "HHG1|SMMCI|TPT|TPTPS|MCOPCB5" "HPE3|HLP3" "sonic hedgehog (Drosophila) homolog|sonic hedgehog homolog (Drosophila)" 1995-03-10 2010-06-25 2016-10-05 6469 ENSG00000164690 OTTHUMG00000151349 uc003wmk.2 NM_000193 CCDS5942 Q15465 7590746 MGI:98297 RGD:3673 SHH 600725 118703 C46.002 +HGNC:20366 SHISA2 shisa family member 2 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 "bA398O19.2|PRO28631|WGAR9166|hShisa" "C13orf13|TMEM46" "chromosome 13 open reading frame 13|transmembrane protein 46|shisa homolog 2 (Xenopus laevis)" Shisa family members 742 2004-04-16 2008-04-01 2013-07-31 2014-11-18 387914 ENSG00000180730 OTTHUMG00000016612 uc001uqm.2 NM_001007538 CCDS31951 Q6UWI4 MGI:2444716 RGD:1561256 SHISA2 +HGNC:25159 SHISA3 shisa family member 3 protein-coding gene gene with protein product Approved 4p13 04p13 hShisa3 shisa homolog 3 (Xenopus laevis) Shisa family members 742 2008-04-01 2013-07-31 2014-11-18 152573 ENSG00000178343 OTTHUMG00000161043 uc003gwp.3 BC012029 NM_001080505 CCDS33979 A0PJX4 MGI:3041225 RGD:1565710 SHISA3 +HGNC:27139 SHISA4 shisa family member 4 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 hShisa4 "C1orf40|TMEM58" "chromosome 1 open reading frame 40|transmembrane protein 58|shisa homolog 4 (Xenopus laevis)" Shisa family members 742 2004-01-09 2008-04-01 2013-07-31 2014-11-18 149345 ENSG00000198892 OTTHUMG00000035807 uc001gxa.4 AY358589 NM_198149 CCDS1416 Q96DD7 12975309 MGI:1924802 RGD:1312041 SHISA4 +HGNC:30376 SHISA5 shisa family member 5 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "SCOTIN|hShisa5" shisa homolog 5 (Xenopus laevis) Shisa family members 742 2008-04-01 2013-07-31 2014-11-19 51246 ENSG00000164054 OTTHUMG00000133529 uc031rzr.2 AF520698 NM_016479 "CCDS2770|CCDS63621|CCDS63622|CCDS63623" Q8N114 "11042152|12135983" MGI:1915044 RGD:1359661 SHISA5 607290 +HGNC:34491 SHISA6 shisa family member 6 protein-coding gene gene with protein product Approved 17p12 17p12 FLJ45455 shisa homolog 6 (Xenopus laevis) Shisa family members 742 2009-08-12 2013-07-31 2016-10-05 388336 ENSG00000188803 OTTHUMG00000154121 uc002gnc.3 "AK127379|AK128003" NM_207386 "CCDS45615|CCDS54089|CCDS54090" Q6ZSJ9 MGI:2685725 RGD:1564618 SHISA6 +HGNC:35409 SHISA7 shisa family member 7 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 shisa homolog 7 (Xenopus laevis) Shisa family members 742 2009-09-30 2013-07-31 2013-07-31 729956 ENSG00000187902 OTTHUMG00000154240 uc002qkz.4 NM_001145176 CCDS46193 A6NL88 MGI:3605641 RGD:1583944 SHISA7 +HGNC:18351 SHISA8 shisa family member 8 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 Orf26 C22orf17 "chromosome 22 open reading frame 17|shisa homolog 8 (Xenopus laevis)" Shisa family members 742 2002-04-03 2009-09-30 2013-07-31 2014-03-31 440829 ENSG00000234965 OTTHUMG00000151273 uc021wqh.1 AI763350 NM_001207020 CCDS74872 B8ZZ34 MGI:2146080 RGD:1563996 +HGNC:37231 SHISA9 shisa family member 9 protein-coding gene gene with protein product Approved 16p13.12 16p13.12 shisa homolog 9 (Xenopus laevis) Shisa family members 742 2009-10-02 2013-07-31 2016-04-25 729993 ENSG00000237515 OTTHUMG00000154258 uc010uyy.3 NM_001145204 "CCDS45417|CCDS45418" B4DS77 MGI:1919805 RGD:2320726 SHISA9 613346 +HGNC:19214 SHKBP1 SH3KBP1 binding protein 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "PP203|Sb1" WD repeat domain containing 362 2005-01-12 2013-01-10 92799 ENSG00000160410 OTTHUMG00000182602 uc002oob.4 AF258553 NM_138392 CCDS12560 Q8TBC3 11152963 MGI:2385803 RGD:1309281 SHKBP1 +HGNC:10850 SHMT1 serine hydroxymethyltransferase 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "CSHMT|SHMT|MGC15229|MGC24556" "cytoplasmic serine hydroxymethyltransferase|14 kDa protein" serine hydroxymethyltransferase 1 (soluble) 1993-07-12 2016-04-04 2016-04-04 6470 ENSG00000176974 OTTHUMG00000059094 uc002gta.5 NM_004169 "CCDS11196|CCDS11197|CCDS62112" P34896 8505317 MGI:98299 RGD:1312011 SHMT1 182144 2.1.2.1 +HGNC:10851 SHMT1P1 serine hydroxymethyltransferase 1 (soluble) pseudogene 1 pseudogene pseudogene Approved 1p34.1 01p34.1 SHMT1P serine hydroxymethyltransferase 1 (soluble) pseudogene 1997-07-01 2010-04-22 2010-04-22 2016-10-05 6471 ENSG00000224751 OTTHUMG00000007558 X85980 NG_002289 8786078 PGOHUM00000243989 +HGNC:10852 SHMT2 serine hydroxymethyltransferase 2 protein-coding gene gene with protein product Approved 12q12-q14 12q12-q14 SHMT serine hydroxymethyltransferase 2 (mitochondrial) 1986-01-01 2016-03-11 2016-03-11 6472 ENSG00000182199 OTTHUMG00000171246 uc001snf.3 AK223555 NM_005412 "CCDS8934|CCDS53805|CCDS55837" P34897 8999870 MGI:1277989 RGD:1308582 SHMT2 138450 2.1.2.1 +HGNC:15454 SHOC2 SHOC2, leucine rich repeat scaffold protein protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "KIAA0862|SOC2|SUR-8|SOC-2|SUR8" "soc-2 (suppressor of clear, C.elegans) homolog|soc-2 suppressor of clear homolog (C. elegans)|SHOC2 leucine-rich repeat scaffold protein" 2001-03-30 2016-06-06 2016-10-12 8036 ENSG00000108061 OTTHUMG00000019047 uc001kzl.5 AB020669 NM_007373 "CCDS7568|CCDS58095" Q9UQ13 "9618511|9674433|10783161" MGI:1927197 RGD:1308146 LRG_753|http://www.lrg-sequence.org/LRG/LRG_753 SHOC2 602775 220877 +HGNC:10853 SHOX short stature homeobox protein-coding gene gene with protein product Approved Xp22.33 and Yp11.32 Xp22.33 and Yp11.32 "PHOG|GCFX|SS|SHOXY" "PRD class homeoboxes and pseudogenes|Pseudoautosomal region 1" "521|715" 1998-06-05 2016-10-12 6473 ENSG00000185960 OTTHUMG00000021053 uc004fou.1 U82668 NM_000451 "CCDS14106|CCDS14107" O15266 "9259282|9140395" "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SHOX|University of Heidelberg|http://hyg-serv-01.hyg.uni-heidelberg.de/lovd/home.php?select_db=SHOX|LRG_710|http://www.lrg-sequence.org/LRG/LRG_710" SHOX "312865|400020" 8626 118707 +HGNC:10854 SHOX2 short stature homeobox 2 protein-coding gene gene with protein product Approved 3q25.32 03q25.32 "SHOT|OG12X|OG12" PRD class homeoboxes and pseudogenes 521 1998-06-05 2016-04-25 6474 ENSG00000168779 OTTHUMG00000158755 uc003fbs.4 AJ002368 XM_006713727 "CCDS33884|CCDS43164|CCDS54664" O60902 "9482898|9466998" MGI:1201673 RGD:3674 SHOX2 602504 8510 +HGNC:1492 SHPK sedoheptulokinase protein-coding gene gene with protein product Approved 17p13.2 17p13.2 SHK CARKL carbohydrate kinase-like 1999-06-22 2008-02-08 2008-02-08 2016-10-05 23729 ENSG00000197417 OTTHUMG00000090694 uc002fvz.1 AF163573 NM_013276 CCDS11030 Q9UHJ6 "10673275|18186520" MGI:1921887 RGD:1308004 SHPK 605060 444924 2.7.1.14 +HGNC:19336 SHPRH SNF2 histone linker PHD RING helicase protein-coding gene gene with protein product Approved 6q24.3 06q24.3 "FLJ90837|KIAA2023|bA545I5.2" SNF2 histone linker PHD RING helicase, E3 ubiquitin protein ligase "Ring finger proteins|PHD finger proteins" "58|88" 2002-11-26 2016-03-11 2016-10-05 257218 ENSG00000146414 OTTHUMG00000015750 uc063sbq.1 AB095943 NM_173082 "CCDS43513|CCDS47496" Q149N8 12837266 MGI:1917581 RGD:1310342 SHPRH 608048 +HGNC:25543 SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding gene gene with protein product Approved 3p13 03p13 "FLJ10539|Shq1p" SHQ1 homolog (S. cerevisiae) 2005-02-08 2013-01-08 2014-11-19 55164 ENSG00000144736 OTTHUMG00000158814 uc003dpf.4 BC025270 NM_018130 CCDS33788 Q6PI26 12477932 MGI:1919421 RGD:1310610 SHQ1 613663 +HGNC:45013 SHQ1P1 SHQ1, H/ACA ribonucleoprotein assembly factor pseudogene 1 pseudogene pseudogene Approved 10q11.23 10q11.23 2013-01-08 2016-08-17 644451 ENSG00000231588 OTTHUMG00000018229 NG_022146 PGOHUM00000289863 +HGNC:24084 SHROOM1 shroom family member 1 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "APXL2|KIAA1960" 2006-07-20 2014-11-18 134549 ENSG00000164403 OTTHUMG00000059835 uc003kxy.3 AF314142 NM_133456 "CCDS4161|CCDS54902" Q2M3G4 "11853319|16615870" MGI:1919024 RGD:1308066 SHROOM1 611179 +HGNC:630 SHROOM2 shroom family member 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 APXL "apical protein, Xenopus laevis-like|apical protein-like (Xenopus laevis)" PDZ domain containing 1220 1995-06-13 2006-07-20 2006-07-20 2016-10-05 357 ENSG00000146950 OTTHUMG00000021121 uc004csu.2 X83543 NM_001649 "CCDS14135|CCDS83453" Q13796 "7795590|16615870" MGI:107194 RGD:1565163 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SHROOM2 SHROOM2 300103 +HGNC:631 SHROOM2P1 shroom family member 2 pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 APXLP "apical protein, Xenopus laevis-like, pseudogene|apical protein-like (Xenopus laevis) pseudogene" 1999-05-17 2010-05-05 2010-05-05 2016-10-05 10031 ENSG00000226863 OTTHUMG00000036466 AC004617 NG_002803 PGOHUM00000233957 +HGNC:30422 SHROOM3 shroom family member 3 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "ShrmL|SHRM|KIAA1481|APXL3" PDZ domain containing 1220 2006-07-20 2014-11-19 57619 ENSG00000138771 OTTHUMG00000157075 uc011cbx.3 AB055660 NM_020859 CCDS3579 Q8TF72 "10589677|16615870" MGI:1351655 RGD:1310470 SHROOM3 604570 +HGNC:29215 SHROOM4 shroom family member 4 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 KIAA1202 PDZ domain containing 1220 2006-07-20 2014-11-19 57477 ENSG00000158352 OTTHUMG00000021521 uc064zgo.1 AB033028 NM_020717 CCDS35277 Q9ULL8 "10574462|16615870" MGI:2685570 RGD:1563434 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SHROOM4 SHROOM4 300579 118713 +HGNC:29319 SHTN1 shootin 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "shootin1|shootin-1" KIAA1598 KIAA1598 2004-03-16 2015-05-22 2015-05-22 2016-10-05 57698 ENSG00000187164 OTTHUMG00000019114 BC022348 NM_018330 "CCDS31293|CCDS44482|CCDS58097|CCDS73207|CCDS73208" A0MZ66 "10997877|17030985" MGI:1918903 RGD:1311558 611171 +HGNC:10856 SI sucrase-isomaltase protein-coding gene gene with protein product Approved 3q26.1 03q26.1 "Oligosaccharide alpha-1,6-glucosidase|alpha-glucosidase" sucrase-isomaltase (alpha-glucosidase) 1986-01-01 2016-04-05 2016-10-05 6476 ENSG00000090402 OTTHUMG00000158065 uc003fei.3 X63597 NM_001041 CCDS3196 P14410 "2962903|1353958" MGI:1917233 RGD:3675 SI 609845 118716 3.2.1.10 +HGNC:18187 SIAE sialic acid acetylesterase protein-coding gene gene with protein product Approved 11q24 11q24 "CSE-C|MGC87009|LSE" sialic acid-specific acetylesterase II YSG2 Ysg2 homolog (mouse) 2005-09-13 2005-12-15 2005-12-15 2014-11-19 54414 ENSG00000110013 OTTHUMG00000165926 uc001qan.4 AF300796 NM_170601 "CCDS8449|CCDS55795" Q9HAT2 10464298 MGI:104803 RGD:1310431 SIAE 610079 +HGNC:10857 SIAH1 siah E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 hSIAH1 seven in absentia homolog 1 (Drosophila) 1997-09-12 2012-02-23 2015-09-08 6477 ENSG00000196470 OTTHUMG00000175417 uc002efo.3 U76247 NM_001006610 "CCDS10735|CCDS32444" Q8IUQ4 "9403064|9334332" MGI:108064 RGD:620449 SIAH1 602212 +HGNC:30966 SIAH1P1 siah E3 ubiquitin protein ligase 1 pseudogene 1 pseudogene pseudogene Approved Xp21.1 Xp21.1 SIAH1L "seven in absentia homolog 1-like (Drosophila)|seven in absentia homolog 1 (Drosophila)-like|seven in absentia homolog 1 (Drosophila) pseudogene 1" 2008-10-31 2010-12-20 2012-02-23 2014-11-19 340571 ENSG00000230227 OTTHUMG00000021347 NG_011405 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SIAH1L SIAH1P1 PGOHUM00000241698 +HGNC:10858 SIAH2 siah E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "seven in absentia (Drosophila) homolog 2|seven in absentia homolog 2 (Drosophila)" 1997-09-12 2012-02-23 2016-10-05 6478 ENSG00000181788 OTTHUMG00000159847 uc003eyi.4 U76248 NM_005067 CCDS3152 O43255 9334332 MGI:108062 RGD:620778 SIAH2 602213 6.3.2.1 +HGNC:40526 SIAH2-AS1 SIAH2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 SIAH2 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874005 ENSG00000244265 OTTHUMG00000159851 uc062pbb.1 +HGNC:30553 SIAH3 siah E3 ubiquitin protein ligase family member 3 protein-coding gene gene with protein product Approved 13q14.13 13q14.13 FLJ39203 seven in absentia homolog 3 (Drosophila) 2008-12-05 2012-02-23 2016-10-05 283514 ENSG00000215475 OTTHUMG00000016862 uc001vap.4 NM_198849 CCDS41883 Q8IW03 12477932 MGI:2685758 RGD:1592168 SIAH3 615609 +HGNC:10865 SIAT5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:25967 SIDT1 SID1 transmembrane family member 1 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "FLJ20174|SID-1" SID1 transmembrane family, member 1 2004-08-20 2015-11-18 2016-10-05 54847 ENSG00000072858 OTTHUMG00000159299 uc003eak.4 AK000181 NM_017699 "CCDS2974|CCDS77790" Q9NXL6 MGI:2443155 RGD:1559616 SIDT1 606816 +HGNC:41126 SIDT1-AS1 SIDT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.2 03q13.2 SIDT1 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874030 ENSG00000239453 OTTHUMG00000150326 uc062mob.1 +HGNC:24272 SIDT2 SID1 transmembrane family member 2 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 CGI-40 SID1 transmembrane family, member 2 2004-08-20 2015-11-18 2015-11-18 51092 ENSG00000149577 OTTHUMG00000167065 uc001pqh.2 AF151799 NM_015996 CCDS31682 Q8NBJ9 "10810093|12975309" MGI:2446134 RGD:1308311 SIDT2 +HGNC:30575 SIGIRR single Ig and TIR domain containing protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "TIR8|IL-1R8" single immunoglobulin domain IL1R1 related single immunoglobulin and toll-interleukin 1 receptor (TIR) domain "Immunoglobulin like domain containing|TIR domain containing" "594|1296" 2005-10-10 2016-06-17 2016-06-17 59307 ENSG00000185187 OTTHUMG00000165412 uc001lpe.1 NM_021805 CCDS31325 Q6IA17 10346978 MGI:1344402 RGD:1306732 SIGIRR 605478 +HGNC:11127 SIGLEC1 sialic acid binding Ig like lectin 1 protein-coding gene gene with protein product Approved 20p13 20p13 "SIGLEC-1|CD169|FLJ00051|FLJ00055|FLJ00073|FLJ32150|dJ1009E24.1|sialoadhesin" SN "sialoadhesin|sialic acid binding Ig-like lectin 1, sialoadhesin" "CD molecules|V-set domain containing|C2-set domain containing|I-set domain containing|Sialic acid binding Ig like lectins" "471|590|592|593|745" 1995-03-15 2006-01-19 2016-01-20 2016-01-20 6614 ENSG00000088827 OTTHUMG00000031757 uc002wja.3 AF230073 NM_023068 CCDS13060 Q9BZZ2 8530048 MGI:99668 RGD:1311953 SIGLEC1 600751 CD169 +HGNC:10874 SIGLEC5 sialic acid binding Ig like lectin 5 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "OB-BP2|SIGLEC-5|CD170" CD33L2 sialic acid binding Ig-like lectin 5 "CD molecules|V-set domain containing|Sialic acid binding Ig like lectins" "471|590|745" 1998-12-16 2016-01-20 2016-01-20 8778 ENSG00000105501 OTTHUMG00000165510 uc061byd.1 U71383 NM_003830 CCDS33088 O15389 10343116 MGI:2681107 SIGLEC5 604200 CD170 +HGNC:10875 SIGLEC6 sialic acid binding Ig like lectin 6 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "OB-BP1|SIGLEC-6|CD327" "CD33L|CD33L1" sialic acid binding Ig-like lectin 6 "CD molecules|V-set domain containing|I-set domain containing|Sialic acid binding Ig like lectins" "471|590|593|745" 1996-12-17 2016-01-20 2016-10-05 946 ENSG00000105492 OTTHUMG00000133571 uc002pwy.4 D86358 NM_001245 "CCDS12834|CCDS12835|CCDS12836|CCDS54307|CCDS54308|CCDS59417" O43699 9465907 SIGLEC6 604405 CDw327 +HGNC:10876 SIGLEC7 sialic acid binding Ig like lectin 7 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "SIGLEC-7|p75/AIRM1|QA79|CD328" "SIGLEC19P|SIGLECP2" "sialic acid binding Ig-like lectin 19, pseudogene|sialic acid binding Ig-like lectin, pseudogene 2|sialic acid binding Ig-like lectin 7" "CD molecules|V-set domain containing|Sialic acid binding Ig like lectins" "471|590|745" 2000-01-26 2016-01-20 2016-01-20 27036 ENSG00000168995 OTTHUMG00000182895 uc002pvv.1 AF170485 NM_016543 "CCDS12826|CCDS42601|CCDS62771" Q9Y286 10567377 SIGLEC7 604410 CDw328 +HGNC:10877 SIGLEC8 sialic acid binding Ig like lectin 8 protein-coding gene gene with protein product Approved 19q13.33-q13.41 19q13.33-q13.41 "SIGLEC-8|SAF2|SIGLEC8L|MGC59785" sialic acid binding Ig-like lectin 8 "V-set domain containing|Sialic acid binding Ig like lectins" "590|745" 2000-01-26 2016-01-20 2016-01-20 27181 ENSG00000105366 OTTHUMG00000182776 uc002pwt.3 AF195092 NM_014442 CCDS33086 Q9NYZ4 10625619 MGI:2681107 RGD:1563073 SIGLEC8 605639 +HGNC:10878 SIGLEC9 sialic acid binding Ig like lectin 9 protein-coding gene gene with protein product Approved 19q13.3-q13.4 19q13.3-q13.4 CD329 sialic acid binding Ig-like lectin 9 "CD molecules|V-set domain containing|Sialic acid binding Ig like lectins" "471|590|745" 2000-03-29 2016-01-20 2016-01-20 27180 ENSG00000129450 OTTHUMG00000182894 uc002pvu.4 AF135027 NM_014441 "CCDS12825|CCDS56100" Q9Y336 10903842 MGI:1932475 SIGLEC9 605640 CDw329 +HGNC:15620 SIGLEC10 sialic acid binding Ig like lectin 10 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "SIGLEC-10|SLG2|PRO940|MGC126774" "sialic acid binding Ig-like lectin 10 Ig-like lectin 7|siglec-like gene 2" sialic acid binding Ig-like lectin 10 "V-set domain containing|C2-set domain containing|Sialic acid binding Ig like lectins" "590|592|745" 2001-06-29 2016-01-20 2016-10-05 89790 ENSG00000142512 OTTHUMG00000165521 uc002pwo.4 AF310233 NM_033130 "CCDS12832|CCDS54301|CCDS54302|CCDS54303|CCDS54304|CCDS54305|CCDS82384" Q96LC7 11284738 MGI:2443630 RGD:1307441 SIGLEC10 606091 +HGNC:15622 SIGLEC11 sialic acid binding Ig like lectin 11 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 sialic acid binding Ig-like lectin 11 "V-set domain containing|C2-set domain containing|I-set domain containing|Sialic acid binding Ig like lectins" "590|592|593|745" 2001-08-28 2016-01-20 2016-10-05 114132 ENSG00000161640 OTTHUMG00000157077 uc010ybh.3 AF337818 NM_052884 "CCDS12790|CCDS46150" Q96RL6 11986327 SIGLEC11 607157 +HGNC:15482 SIGLEC12 sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "SLG|S2V|Siglec-XII|Siglec-12|Siglec-L1" SIGLECL1 "SIGLEC-like 1|sialic acid binding Ig-like lectin 12|sialic acid binding Ig-like lectin 12 (gene/pseudogene)" "V-set domain containing|C2-set domain containing|I-set domain containing|Sialic acid binding Ig like lectins" "590|592|593|745" 2001-08-28 2004-10-20 2016-01-20 2016-01-20 89858 ENSG00000254521 OTTHUMG00000165524 uc002pwx.3 AF282256 NM_053003 "CCDS12833|CCDS59416" Q96PQ1 "11409877|11328818|21555517" MGI:1932475 SIGLEC12 606094 +HGNC:32926 SIGLEC14 sialic acid binding Ig like lectin 14 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 sialic acid binding Ig-like lectin 14 "V-set domain containing|Sialic acid binding Ig like lectins" "590|745" 2007-05-31 2016-01-20 2016-01-20 100049587 ENSG00000254415 OTTHUMG00000165511 uc002pxf.5 AY854038 NM_001098612 CCDS42604 Q08ET2 17012248 RGD:1305432 SIGLEC14 +HGNC:27596 SIGLEC15 sialic acid binding Ig like lectin 15 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 HsT1361 CD33L3 "CD33 antigen-like 3|CD33 molecule-like 3|sialic acid binding Ig-like lectin 15" "V-set domain containing|Sialic acid binding Ig like lectins" "590|745" 2004-01-16 2007-05-31 2016-01-20 2016-01-20 284266 ENSG00000197046 OTTHUMG00000170870 uc002lbl.2 AK095432 NM_213602 CCDS32819 Q6ZMC9 17483134 MGI:3646642 RGD:1565948 SIGLEC15 +HGNC:24851 SIGLEC16 sialic acid binding Ig like lectin 16 (gene/pseudogene) protein-coding gene gene with protein product Approved 19q13.33 19q13.33 Siglec-P16 SIGLECP16 "sialic acid binding Ig-like lectin, pseudogene 16|sialic acid binding Ig-like lectin 16 (gene/pseudogene)" "V-set domain containing|C2-set domain containing|I-set domain containing|Sialic acid binding Ig like lectins" "590|592|593|745" 2004-10-20 2008-08-04 2016-01-20 2016-01-20 400709 ENSG00000161643 OTTHUMG00000183074 BC030222 NR_002825 A6NMB1 "11986327|18629938" SIGLEC16 PGOHUM00000263714 +HGNC:15604 SIGLEC17P sialic acid binding Ig like lectin 17, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP3 "sialic acid binding Ig-like lectin, pseudogene 3|sialic acid binding Ig-like lectin 17, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2012-04-30 2016-01-20 2016-01-20 284367 ENSG00000171101 OTTHUMG00000182974 AF161341 NR_002804 PGOHUM00000263717 +HGNC:15491 SIGLEC18P sialic acid binding Ig like lectin 18, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP1 "sialic acid binding Ig-like lectin, pseudogene 1|SIGLEC18P, sialic acid binding Ig-like lectin 18, pseudogene|sialic acid binding Ig-like lectin 18, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-07-26 114184 ENSG00000268581 OTTHUMG00000183140 AC011473 NG_004728 11546777 +HGNC:15609 SIGLEC20P sialic acid binding Ig like lectin 20, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP4 "sialic acid binding Ig-like lectin, pseudogene 4|sialic acid binding Ig-like lectin 20, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-07-26 114192 ENSG00000268336 OTTHUMG00000183130 AY040544 NG_004735 11546777 PGOHUM00000295409 +HGNC:15610 SIGLEC21P sialic acid binding Ig like lectin 21, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP5 "sialic acid binding Ig-like lectin, pseudogene 5|sialic acid binding Ig-like lectin 21, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-07-26 114194 ENSG00000269253 OTTHUMG00000183131 NG_004736 11546777 PGOHUM00000295410 +HGNC:15611 SIGLEC22P sialic acid binding Ig like lectin 22, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP6 "sialic acid binding Ig-like lectin, pseudogene 6|sialic acid binding Ig-like lectin 22, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-01-20 114195 ENSG00000268849 OTTHUMG00000183132 NG_004737 11546777 PGOHUM00000234742 +HGNC:15613 SIGLEC24P sialic acid binding Ig like lectin 24, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP8 "sialic acid binding Ig-like lectin, pseudogene 8|sialic acid binding Ig-like lectin 24, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-01-20 114196 NG_004738 11546777 +HGNC:15614 SIGLEC25P sialic acid binding Ig like lectin 25, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP9 "sialic acid binding Ig-like lectin, pseudogene 9|sialic acid binding Ig-like lectin 25, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-01-20 114198 NG_004740 11546777 +HGNC:15615 SIGLEC26P sialic acid binding Ig like lectin 26, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP10 "sialic acid binding Ig-like lectin, pseudogene 10|sialic acid binding Ig-like lectin 26, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-01-20 114185 ENSG00000268957 OTTHUMG00000185923 AC008750 NG_004729 11546777 +HGNC:15617 SIGLEC27P sialic acid binding Ig like lectin 27, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP11 "sialic acid binding Ig-like lectin, pseudogene 11|sialic acid binding Ig-like lectin 27, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-01-20 114186 ENSG00000269580 OTTHUMG00000183494 NG_004730 11546777 +HGNC:15618 SIGLEC28P sialic acid binding Ig like lectin 28, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP12 "sialic acid binding Ig-like lectin, pseudogene 12|sialic acid binding Ig-like lectin 28, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-01-20 114187 ENSG00000269130 OTTHUMG00000183513 NG_004731 11546777 +HGNC:15619 SIGLEC29P sialic acid binding Ig like lectin 29, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 SIGLECP13 "sialic acid binding Ig-like lectin, pseudogene 13|sialic acid binding Ig-like lectin 29, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-07-26 114188 ENSG00000268267 OTTHUMG00000183514 NG_004732 11546777 PGOHUM00000295078 +HGNC:15623 SIGLEC30P sialic acid binding Ig like lectin 30, pseudogene pseudogene pseudogene Approved 1q24.2 01q24.2 SIGLECP14 "sialic acid binding Ig-like lectin, pseudogene 14|sialic acid binding Ig-like lectin 30, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-01-20 114190 ENSG00000224896 OTTHUMG00000035957 AL162428 NG_004734 11546777 +HGNC:16072 SIGLEC31P sialic acid binding Ig like lectin 31, pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 SIGLECP15 "sialic acid binding Ig-like lectin, pseudogene 15|sialic acid binding Ig-like lectin 31, pseudogene" Sialic acid binding Ig like lectins 745 2001-08-28 2010-02-04 2016-01-20 2016-07-26 114189 ENSG00000268847 OTTHUMG00000182191 NG_004733 11546777 +HGNC:26856 SIGLECL1 SIGLEC family like 1 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ40235 "C19orf75|SIGLEC23P|SIGLECP7" "chromosome 19 open reading frame 75|sialic acid binding Ig-like lectin 23, pseudogene|sialic acid binding Ig-like lectin, pseudogene 7" 2009-07-20 2012-07-20 2012-07-20 2016-10-05 284369 ENSG00000179213 OTTHUMG00000182881 uc002pwb.2 AK097554 NM_173635 "CCDS12827|CCDS77341" Q8N7X8 MGI:1921304 RGD:2324488 +HGNC:8157 SIGMAR1 sigma non-opioid intracellular receptor 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 SR-BP1 OPRS1 opioid receptor, sigma 1 1993-03-11 2008-12-18 2008-12-18 2014-11-19 10280 ENSG00000147955 OTTHUMG00000019829 uc003zvb.5 BC004899 NM_005866 "CCDS6562|CCDS6563" Q99720 "8954936|9453537" MGI:1195268 RGD:68364 SIGMAR1 601978 291509 objectId:2552 +HGNC:11142 SIK1 salt inducible kinase 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 msk myocardial SNF1-like kinase SNF1LK SNF1-like kinase 2000-05-23 2008-12-23 2015-11-23 2015-11-23 150094 ENSG00000142178 OTTHUMG00000086874 uc002zdf.4 BC038504 NM_173354 CCDS33575 P57059 7893599 MGI:104754 RGD:69407 SIK1 605705 426073 objectId:2197 +HGNC:21680 SIK2 salt inducible kinase 2 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "KIAA0781|QIK|DKFZp434K1115|LOH11CR1I" SNF1LK2 SNF1-like kinase 2 2005-01-21 2008-12-23 2015-11-23 2015-11-23 23235 ENSG00000170145 OTTHUMG00000150644 uc001plt.4 AB018324 NM_015191 CCDS8347 Q9H0K1 15067358 MGI:2445031 RGD:1559698 SIK2 608973 objectId:2198 +HGNC:29165 SIK3 SIK family kinase 3 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "FLJ12240|L19|KIAA0999|QSK" 2009-09-04 2016-04-25 23387 ENSG00000160584 OTTHUMG00000066628 uc001ppy.5 AB023216 NM_025164 "CCDS60974|CCDS8379" Q9Y2K2 "10231032|8889548" MGI:2446296 RGD:1593938 SIK3 614776 objectId:2199 +HGNC:41495 SIK3-IT1 SIK3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 11q23.3 11q23.3 SIK3 intronic transcript 1 (non-protein coding) 2012-01-20 2015-02-25 2015-02-25 100874315 ENSG00000231865 OTTHUMG00000066638 +HGNC:26119 SIKE1 suppressor of IKBKE 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "FLJ21168|SIKE" suppressor of IKK epsilon 2009-08-06 2016-10-05 80143 ENSG00000052723 OTTHUMG00000012061 uc001efo.5 AK024821 NM_025073 "CCDS878|CCDS41371" Q9BRV8 16281057 MGI:1913891 RGD:1311316 SIKE1 611656 +HGNC:24624 SIL1 SIL1 nucleotide exchange factor protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "BAP|ULG5" MSS "Marinesco-Sjogren syndrome|SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)" 2005-09-01 2013-08-21 2016-10-05 64374 ENSG00000120725 OTTHUMG00000129226 uc003ldp.4 AK075177 NM_022464 CCDS4209 Q9H173 "11101517|12356756|16282977" MGI:1932040 RGD:735103 SIL1 608005 118718 +HGNC:10882 SIM1 single-minded family bHLH transcription factor 1 protein-coding gene gene with protein product Approved 6q16.3 06q16.3 bHLHe14 "single-minded (Drosophila) homolog 1|single-minded homolog 1 (Drosophila)" Basic helix-loop-helix proteins 420 1997-07-22 2013-10-17 2014-11-19 6492 ENSG00000112246 OTTHUMG00000015275 uc063qgu.1 U70212 NM_005068 CCDS5045 P81133 "9199934|11448938" MGI:98306 RGD:1309949 SIM1 603128 158398 +HGNC:10883 SIM2 single-minded family bHLH transcription factor 2 protein-coding gene gene with protein product Approved 21q22.13 21q22.13 "MGC119447|bHLHe15" transcription factor SIM2 SIM "single-minded (Drosophila) homolog 2|single-minded homolog 2 (Drosophila)" Basic helix-loop-helix proteins 420 1995-10-02 2013-10-17 2016-10-05 6493 ENSG00000159263 OTTHUMG00000086637 uc002yvr.3 NM_009586 CCDS13646 Q14190 7485157 MGI:98307 RGD:1308016 SIM2 600892 +HGNC:24779 SIMC1 SUMO interacting motifs containing 1 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "FLJ44216|OOMA1|PLEIAD" "oocyte maturation associated 1|platform element for inhibition of autolytic degradation" C5orf25 "chromosome 5 open reading frame 25|SUMO-interacting motifs containing 1" 2006-04-10 2012-11-14 2016-01-28 2016-01-28 375484 ENSG00000170085 OTTHUMG00000130663 uc003mdr.4 BC037298 NM_198567 "CCDS4398|CCDS78088|CCDS78089|CCDS78090" Q8NDZ2 "23086935|23707407" MGI:2442599 RGD:2319689 SIMC1 +HGNC:19353 SIN3A SIN3 transcription regulator family member A protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "KIAA0700|DKFZP434K2235" "SIN3 homolog A, transcription regulator (yeast)|SIN3 transcription regulator homolog A (yeast)" EMSY complex 1243 2002-10-09 2013-08-21 2016-10-05 25942 ENSG00000169375 OTTHUMG00000142834 uc010uml.3 AK027559 NM_015477 CCDS10279 Q96ST3 "10773092|7601471" MGI:107157 RGD:1311598 SIN3A 607776 +HGNC:19354 SIN3B SIN3 transcription regulator family member B protein-coding gene gene with protein product Approved 19p13.12 19p13.12 KIAA0700 "SIN3 homolog B, transcription regulator (yeast)|SIN3 transcription regulator homolog B (yeast)" EMSY complex 1243 2002-10-09 2013-08-21 2014-11-18 23309 ENSG00000127511 OTTHUMG00000182642 uc002nez.3 AB014600 NM_015260 "CCDS32946|CCDS74308|CCDS77254" O75182 9734811 MGI:107158 RGD:1587989 SIN3B 607777 +HGNC:10885 SIPA1 signal-induced proliferation-associated 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 SPA1 PDZ domain containing 1220 1997-12-23 2008-09-12 2016-10-05 6494 ENSG00000213445 OTTHUMG00000166541 uc058dmg.1 "AH006363|BC010492|BM677738" NM_006747 CCDS8108 Q96FS4 9027487 MGI:107576 RGD:1303184 SIPA1 602180 +HGNC:20284 SIPA1L1 signal induced proliferation associated 1 like 1 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 "KIAA0440|E6TP1" signal-induced proliferation-associated 1 like 1 PDZ domain containing 1220 2003-12-11 2016-04-05 2016-04-05 26037 ENSG00000197555 OTTHUMG00000171282 uc001xms.5 AB007900 NM_015556 "CCDS9807|CCDS61490|CCDS61491" O43166 9858596 MGI:2443679 RGD:708497 SIPA1L1 +HGNC:23800 SIPA1L2 signal induced proliferation associated 1 like 2 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 KIAA1389 signal-induced proliferation-associated 1 like 2 PDZ domain containing 1220 2003-12-11 2016-04-05 2016-04-05 57568 ENSG00000116991 OTTHUMG00000037820 uc001hvg.4 AB037810 XM_045839 CCDS41474 Q9P2F8 MGI:2676970 RGD:1306269 SIPA1L2 611609 +HGNC:23801 SIPA1L3 signal induced proliferation associated 1 like 3 protein-coding gene gene with protein product Approved 19q13.13-q13.2 19q13.13-q13.2 KIAA0545 signal-induced proliferation-associated 1 like 3 PDZ domain containing 1220 2003-12-11 2016-04-05 2016-10-11 23094 ENSG00000105738 OTTHUMG00000073727 uc002ohk.4 AB011117 XM_032278 CCDS33007 O60292 MGI:1921456 RGD:1311432 SIPA1L3 616655 458270 +HGNC:9662 SIRPA signal regulatory protein alpha protein-coding gene gene with protein product Approved 20p13 20p13 "SHPS1|SIRP|MYD-1|BIT|P84|SHPS-1|SIRPalpha|CD172a|SIRPalpha2|MFR|SIRP-ALPHA-1" PTPNS1 "protein tyrosine phosphatase, non-receptor type substrate 1|signal-regulatory protein alpha" "CD molecules|V-set domain containing|C1-set domain containing|Signal regulatory proteins" "471|590|591|747" 1999-03-19 2006-03-29 2016-01-20 2016-01-20 140885 ENSG00000198053 OTTHUMG00000031682 uc002wfq.3 D86043 NM_080792 "CCDS13022|CCDS82593" P78324 "9070220|9062191|16339511" MGI:108563 RGD:3449 SIRPA 602461 CD172a +HGNC:9663 SIRPAP1 signal regulatory protein alpha pseudogene 1 pseudogene pseudogene Approved 22q12.2 22q12.2 SIRPA2P PTPNS1L "protein tyrosine phosphatase, non-receptor type substrate 1-like|signal-regulatory protein alpha pseudogene 1" 1999-10-29 2010-10-25 2016-01-20 2016-01-20 23755 ENSG00000225774 OTTHUMG00000151257 NG_002457 "10591208|16339510" PGOHUM00000246563 +HGNC:15928 SIRPB1 signal regulatory protein beta 1 protein-coding gene gene with protein product Approved 20p13 20p13 "SIRP-BETA-1|CD172b" signal-regulatory protein beta 1 "CD molecules|V-set domain containing|C1-set domain containing|Signal regulatory proteins" "471|590|591|747" 2001-06-21 2016-01-20 2016-01-20 10326 ENSG00000101307 OTTHUMG00000031676 uc010gai.4 Y10376 NM_006065 "CCDS13019|CCDS42850|CCDS46571|CCDS82591" "O00241|Q5TFQ8" "9062191|16339511" "MGI:2444824|MGI:3779828|MGI:3807521" SIRPB1 603889 CD172b +HGNC:16247 SIRPB2 signal regulatory protein beta 2 protein-coding gene gene with protein product Approved 20p13 20p13 dJ776F14.2 "PTPN1L|PTPNS1L3" "protein tyrosine phosphatase, non-receptor type 1-like|protein tyrosine phosphatase, non-receptor type substrate 1-like 3|signal-regulatory protein beta 2" "V-set domain containing|Signal regulatory proteins" "590|747" 2001-07-17 2006-02-03 2016-01-20 2016-04-06 284759 ENSG00000196209 OTTHUMG00000031670 uc002wfg.3 AL109658 NM_178459 "CCDS42849|CCDS46570" Q5JXA9 "16339511|16691243" RGD:6501293 SIRPB2 +HGNC:49209 SIRPB3P signal regulatory protein beta 3, pseudogene pseudogene pseudogene Approved 20p13 20p13 signal-regulatory protein beta 3, pseudogene Signal regulatory proteins 747 2013-10-08 2016-01-20 2016-01-20 100652885 ENSG00000223750 OTTHUMG00000031678 "16339510|16339511" MGI:3045317 +HGNC:16248 SIRPD signal regulatory protein delta protein-coding gene gene with protein product Approved 20p13 20p13 dJ576H24.4 PTPNS1L2 "protein tyrosine phosphatase, non-receptor type substrate 1-like 2|signal-regulatory protein delta" "V-set domain containing|Signal regulatory proteins" "590|747" 2001-07-17 2006-02-03 2016-01-20 2016-01-20 128646 ENSG00000125900 OTTHUMG00000031674 uc002wfi.4 AL049634 NM_178460 CCDS13018 Q9H106 16339511 SIRPD +HGNC:15757 SIRPG signal regulatory protein gamma protein-coding gene gene with protein product Approved 20p13 20p13 "bA77C3.1|SIRP-B2|SIRPgamma|CD172g" SIRPB2 "signal-regulatory protein beta 2|signal-regulatory protein gamma" "CD molecules|V-set domain containing|C1-set domain containing|Signal regulatory proteins" "471|590|591|747" 2001-09-17 2006-02-03 2016-01-20 2016-01-20 55423 ENSG00000089012 OTTHUMG00000031680 uc002wfm.1 AB042624 NM_018556 "CCDS13020|CCDS13021|CCDS33434" Q9P1W8 "11185750|16339511" SIRPG 605466 CD172g +HGNC:51229 SIRPG-AS1 SIRPG antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p13 20p13 2014-08-08 2014-08-08 101929010 ENSG00000237914 OTTHUMG00000031675 AK093519 NR_110090 +HGNC:14929 SIRT1 sirtuin 1 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 SIR2L1 "sirtuin (silent mating type information regulation 2, S. cerevisiae, homolog) 1|sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae)" Sirtuins 938 2001-03-20 2010-06-25 2016-10-05 23411 ENSG00000096717 OTTHUMG00000018340 uc001jnd.3 AF083106 NM_012238 "CCDS7273|CCDS44412|CCDS81469" Q96EB6 10381378 MGI:2135607 RGD:1308542 SIRT1 604479 objectId:2707 +HGNC:51912 SIRT1-AS SIRT1 antisense RNA non-coding RNA RNA, long non-coding Approved 10q21.3 10q21.3 2015-09-23 2015-09-23 106633813 26324025 +HGNC:10886 SIRT2 sirtuin 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 SIR2L "sirtuin (silent mating type information regulation 2, S.cerevisiae, homolog) 2|sirtuin (silent mating type information regulation 2 homolog) 2 (S. cerevisiae)" Sirtuins 938 1998-10-14 2010-06-25 2016-10-05 22933 ENSG00000068903 OTTHUMG00000150480 uc002ojt.3 AF083107 XR_001753638 "CCDS12523|CCDS46069|CCDS74361" Q8IXJ6 "10393250|10381378" MGI:1927664 RGD:621481 SIRT2 604480 objectId:2708 +HGNC:14931 SIRT3 sirtuin 3 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 SIR2L3 "sirtuin (silent mating type information regulation 2, S.cerevisiae, homolog) 3|sirtuin (silent mating type information regulation 2 homolog) 3 (S. cerevisiae)" Sirtuins 938 2001-03-20 2010-06-25 2014-11-18 23410 ENSG00000142082 OTTHUMG00000119074 uc001lok.5 AF083108 XR_001747817 "CCDS7691|CCDS53590" Q9NTG7 "10381378|18215119" MGI:1927665 RGD:1308374 SIRT3 604481 objectId:2709 +HGNC:14932 SIRT4 sirtuin 4 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 SIR2L4 "sirtuin (silent mating type information regulation 2, S. cerevisiae, homolog) 4|sirtuin (silent mating type information regulation 2 homolog) 4 (S. cerevisiae)" Sirtuins 938 2001-03-20 2010-06-25 2014-11-19 23409 ENSG00000089163 OTTHUMG00000169028 uc001tyc.4 AF083109 NM_012240 CCDS9194 Q9Y6E7 10381378 MGI:1922637 RGD:1310413 SIRT4 604482 objectId:2710 +HGNC:14933 SIRT5 sirtuin 5 protein-coding gene gene with protein product Approved 6p23 06p23 "sirtuin (silent mating type information regulation 2, S.cerevisiae, homolog) 5|sirtuin (silent mating type information regulation 2 homolog) 5 (S. cerevisiae)" Sirtuins 938 2001-03-20 2010-06-25 2014-11-19 23408 ENSG00000124523 OTTHUMG00000014278 uc003nay.4 AF083110 XM_005248968 "CCDS4526|CCDS4527|CCDS54966|CCDS56398" Q9NXA8 10381378 MGI:1915596 RGD:1303285 SIRT5 604483 objectId:2711 +HGNC:14934 SIRT6 sirtuin 6 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "sirtuin (silent mating type information regulation 2, S. cerevisiae, homolog) 6|sirtuin (silent mating type information regulation 2 homolog) 6 (S. cerevisiae)" Sirtuins 938 2001-03-20 2010-06-25 2015-09-02 51548 ENSG00000077463 OTTHUMG00000181847 uc002lzo.4 AF233396 NM_016539 "CCDS12122|CCDS54199|CCDS82275|CCDS82276" Q8N6T7 10873683 MGI:1354161 RGD:1305216 SIRT6 606211 objectId:2712 +HGNC:14935 SIRT7 sirtuin 7 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "sirtuin (silent mating type information regulation 2, S.cerevisiae, homolog) 7|sirtuin (silent mating type information regulation 2 homolog) 7 (S. cerevisiae)" Sirtuins 938 2001-03-20 2010-06-25 2014-11-19 51547 ENSG00000187531 OTTHUMG00000177957 uc002kcj.3 AF233395 NM_016538 CCDS11792 Q9NRC8 "10873683|16618798" MGI:2385849 RGD:1305876 SIRT7 606212 objectId:2713 +HGNC:17710 SIT1 signaling threshold regulating transmembrane adaptor 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 SIT SHP2 interacting transmembrane adaptor suppression inducing transmembrane adaptor 1 2005-04-25 2005-04-26 2016-10-05 27240 ENSG00000137078 OTTHUMG00000019867 uc003zxe.3 NM_014450 CCDS6582 Q9Y3P8 "11491537|10209036" MGI:1889342 RGD:1559919 SIT1 604964 +HGNC:17712 SIVA1 SIVA1 apoptosis inducing factor protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "SIVA|Siva-1|Siva-2|CD27BP" 2006-12-05 2016-02-09 2016-02-09 10572 ENSG00000184990 OTTHUMG00000170819 uc001yph.4 U82938 NM_006427 "CCDS9992|CCDS9993" O15304 9177220 MGI:1353606 RGD:1561872 SIVA1 605567 +HGNC:10887 SIX1 SIX homeobox 1 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 DFNA23 "sine oculis homeobox (Drosophila) homolog 1|sine oculis homeobox homolog 1 (Drosophila)|deafness, autosomal dominant 23" SINE class homeoboxes 525 1995-09-29 2007-07-13 2015-09-02 6495 ENSG00000126778 OTTHUMG00000140334 uc001xfb.5 X91868 XM_017021602 CCDS9748 Q15475 "8617500|15141091" MGI:102780 RGD:620906 SIX1 601205 8511 118723 +HGNC:10888 SIX2 SIX homeobox 2 protein-coding gene gene with protein product Approved 2p21 02p21 "sine oculis homeobox (Drosophila) homolog 2|sine oculis homeobox homolog 2 (Drosophila)" SINE class homeoboxes 525 1999-04-15 2007-07-13 2014-11-18 10736 ENSG00000170577 OTTHUMG00000152421 uc002ruo.4 AF136939 XM_005264100 CCDS1822 Q9NPC8 MGI:102778 RGD:1310792 SIX2 604994 8512 +HGNC:10889 SIX3 SIX homeobox 3 protein-coding gene gene with protein product Approved 2p21 02p21 HPE2 "holoprosencephaly 2, alobar or semilobar|sine oculis homeobox homolog 3 (Drosophila)" SINE class homeoboxes 525 1998-04-21 2007-07-13 2015-09-02 6496 ENSG00000138083 OTTHUMG00000152424 uc002run.2 AF092047 NM_005413 CCDS1821 O95343 "9889003|10369266" MGI:102764 RGD:620909 SIX3 603714 8513 118725 +HGNC:40532 SIX3-AS1 SIX3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p21 02p21 SIX3 antisense RNA 1 (non-protein coding) 2012-05-01 2012-08-15 2014-11-19 100506108 ENSG00000236502 OTTHUMG00000152423 uc032nlu.2 "BM690547|BM663835" NR_103785 +HGNC:10890 SIX4 SIX homeobox 4 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 AREC3 "sine oculis homeobox (Drosophila) homolog 4|sine oculis homeobox homolog 4 (Drosophila)" SINE class homeoboxes 525 2001-06-22 2007-07-13 2014-11-18 51804 ENSG00000100625 OTTHUMG00000028996 uc001xfc.4 AB024687 XM_005267759 CCDS9749 Q9UIU6 "10512683|10640827" MGI:106034 RGD:1306726 SIX4 606342 8514 +HGNC:10891 SIX5 SIX homeobox 5 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 DMAHP "sine oculis homeobox (Drosophila) homolog 5|sine oculis homeobox homolog 5 (Drosophila)" SINE class homeoboxes 525 1997-05-29 2007-07-13 2015-08-25 147912 ENSG00000177045 OTTHUMG00000172208 uc002pdb.4 L08835 NM_175875 CCDS12673 Q8N196 8595416 MGI:106220 RGD:1305040 SIX5 600963 8515 138472 +HGNC:10892 SIX6 SIX homeobox 6 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 Six9 OPTX2 "sine oculis homeobox (Drosophila) homolog 6|sine oculis homeobox homolog 6 (Drosophila)" SINE class homeoboxes 525 1998-04-21 2007-07-13 2014-11-19 4990 ENSG00000184302 OTTHUMG00000152339 uc001xfa.5 AF141651 NM_007374 CCDS9747 O95475 10512683 MGI:1341840 RGD:1310497 SIX6 606326 8516 118728 +HGNC:28109 SKA1 spindle and kinetochore associated complex subunit 1 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 MGC10200 C18orf24 chromosome 18 open reading frame 24 2004-05-19 2009-08-19 2009-08-19 2014-11-19 220134 ENSG00000154839 OTTHUMG00000132685 uc002let.4 BC015706 NM_145060 CCDS11946 Q96BD8 17093495 MGI:1913718 RGD:1310784 SKA1 616673 +HGNC:28006 SKA2 spindle and kinetochore associated complex subunit 2 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 FLJ12758 FAM33A family with sequence similarity 33, member A 2004-02-24 2009-08-19 2009-08-19 2014-11-19 348235 ENSG00000182628 OTTHUMG00000179361 uc002ixd.3 BC017873 NM_182620 "CCDS45747|CCDS45748|CCDS82175" Q8WVK7 "17093495|19289083|18583474" MGI:1913390 RGD:1307084 SKA2 616674 +HGNC:23122 SKA2P1 spindle and kinetochore associated complex subunit 2 pseudogene 1 pseudogene pseudogene Approved 9q33.2 09q33.2 Em:AC006313.1 "FAM33B|SKA2L" "family with sequence similarity 33, member B|spindle and kinetochore associated complex subunit 2-like" 2004-06-02 2013-01-16 2013-01-16 2013-01-16 729012 ENSG00000232387 OTTHUMG00000020617 NG_027505 +HGNC:20262 SKA3 spindle and kinetochore associated complex subunit 3 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "MGC4832|RAMA1" C13orf3 chromosome 13 open reading frame 3 2003-01-16 2009-08-19 2009-08-19 2016-10-05 221150 ENSG00000165480 OTTHUMG00000016539 uc001unt.3 AF361358 NM_145061 "CCDS31946|CCDS53856" Q8IX90 "19387489|19289083|19646878|19360002" MGI:3041235 RGD:1307201 SKA3 +HGNC:15605 SKAP1 src kinase associated phosphoprotein 1 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 SKAP55 SCAP1 src family associated phosphoprotein 1 Pleckstrin homology domain containing 682 2001-06-21 2006-09-28 2006-09-28 2014-11-19 8631 ENSG00000141293 OTTHUMG00000178823 uc002ini.2 Y11215 NM_003726 CCDS32674 Q86WV1 9195899 MGI:1925723 RGD:708436 SKAP1 604969 +HGNC:15687 SKAP2 src kinase associated phosphoprotein 2 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "RA70|SKAP-HOM|SKAP55R|SAPS" SCAP2 src family associated phosphoprotein 2 Pleckstrin homology domain containing 682 2001-07-19 2006-09-28 2006-09-28 2014-11-19 8935 ENSG00000005020 OTTHUMG00000023495 uc003syc.4 XM_017012771 CCDS5400 O75563 "9837776|9755858" MGI:1889206 RGD:620159 SKAP2 605215 +HGNC:10896 SKI SKI proto-oncogene protein-coding gene gene with protein product Approved 1p36.33-p36.32 01p36.33-p36.32 v-ski avian sarcoma viral oncogene homolog SKI transcriptional corepressors 748 2001-06-22 2014-06-25 2016-10-11 6497 ENSG00000157933 OTTHUMG00000001407 uc001aja.5 X15218 NM_003036 CCDS39 P12755 2762147 MGI:98310 RGD:1565591 SKI 164780 311140 +HGNC:32697 SKIDA1 SKI/DACH domain containing 1 protein-coding gene gene with protein product Approved 10p12.31 10p12.31 FLJ45187 C10orf140 chromosome 10 open reading frame 140 2007-08-14 2012-06-13 2012-06-13 2014-11-19 387640 ENSG00000180592 OTTHUMG00000017797 uc009xkd.4 AK131456 NM_207371 CCDS44363 Q1XH10 MGI:1919918 RGD:1588196 +HGNC:10897 SKIL SKI like proto-oncogene protein-coding gene gene with protein product Approved 3q26.2 03q26.2 "SNO|SnoN|SnoA" SKI-like oncogene SKI transcriptional corepressors 748 1997-11-28 2016-08-09 2016-10-05 6498 ENSG00000136603 OTTHUMG00000158831 uc003fgw.4 X15217 NM_005414 "CCDS33890|CCDS46953|CCDS46954" P12757 2762147 MGI:106203 RGD:621399 SKIL 165340 +HGNC:33993 SKINT1L Skint1 like (pseudogene) pseudogene pseudogene Approved 1p33 01p33 BTN12 "SKINTP|SKINTL" Butyrophilins 458 2009-04-30 2016-01-06 2016-01-06 2016-01-06 391037 ENSG00000242267 OTTHUMG00000007955 NR_026749 "18408721|25830554" RGD:6490949 616392 +HGNC:10898 SKIV2L Ski2 like RNA helicase protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "HLP|DDX13|SKI2W|170A|SKIV2L1" SKIV2 "superkiller viralicidic activity 2 (S. cerevisiae homolog)-like|superkiller viralicidic activity 2-like (S. cerevisiae)|SKI2 homolog, superkiller viralicidic activity 2-like" RNA helicases 1168 1995-07-06 2016-01-08 2016-10-05 6499 ENSG00000204351 OTTHUMG00000031146 uc003nyn.2 NM_006929 CCDS4731 Q15477 "7759100|9799600" MGI:1099835 RGD:1303059 SKIV2L 600478 299641 +HGNC:18734 SKIV2L2 Ski2 like RNA helicase 2 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "Mtr4|Dob1|fSAP118" functional spliceosome-associated protein 118 KIAA0052 "KIAA0052|superkiller viralicidic activity 2-like 2 (S. cerevisiae)" "RNA helicases|Nuclear exosome targeting complex" "1168|1316" 2004-07-02 2005-02-18 2016-01-08 2016-07-12 23517 ENSG00000039123 OTTHUMG00000097019 uc003jpy.5 D29641 NM_015360 CCDS3967 P42285 "16782053|21855801" MGI:1919448 RGD:1305984 SKIV2L2 3.6.4.13 +HGNC:21326 SKOR1 SKI family transcriptional corepressor 1 protein-coding gene gene with protein product Approved 15q23 15q23 "CORL1|FUSSEL15" "transcriptional corepressor CORL1|functional smad suppressing element 15|corepressor for LBX1" LBXCOR1 Lbxcor1 homolog (mouse) SKI transcriptional corepressors 748 2005-05-08 2010-06-23 2010-06-23 2014-11-19 390598 ENSG00000188779 OTTHUMG00000170878 uc031qsn.2 NM_001031807 CCDS58374 P84550 15528197 MGI:2443473 RGD:1307687 SKOR1 611273 +HGNC:32695 SKOR2 SKI family transcriptional corepressor 2 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "CORL2|FUSSEL18|Fussel-18" functional smad suppressing element 18 SKI transcriptional corepressors 748 2010-06-23 2011-08-04 652991 ENSG00000215474 OTTHUMG00000180309 uc010dnt.2 AY669508 NM_001037802 "CCDS62441|CCDS74222" Q2VWA4 "16200078|18522874" MGI:3645984 RGD:1598071 SKOR2 617138 +HGNC:10899 SKP1 S-phase kinase associated protein 1 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "EMC19|OCP2|TCEB1L|MGC34403|OCP-II|p19A" SKP1A S-phase kinase-associated protein 1A (p19A) SCF complex 1171 1995-12-18 2007-11-13 2016-09-09 2016-10-05 6500 ENSG00000113558 OTTHUMG00000129117 uc003kzc.5 U33760 NM_170679 "CCDS4171|CCDS4172" P63208 "7553852|8646875" MGI:103575 RGD:1359648 SKP1 601434 +HGNC:33696 SKP1P1 S-phase kinase associated protein 1 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 EMC19 "OCP2|TCEB1L|TCEB1P" "transcription elongation factor B (SIII), polypeptide 1-like|transcription elongation factor B (SIII), polypeptide 1 pseudogene" 2007-11-13 2016-09-09 2016-09-09 6922 ENSG00000231234 OTTHUMG00000156598 NG_002399.3 PGOHUM00000232843 +HGNC:10900 SKP1P2 S-phase kinase associated protein 1 pseudogene 2 pseudogene pseudogene Approved 12p12.3 12p12.3 p19B SKP1B S-phase kinase-associated protein 1B (p19B) 1995-12-18 2007-11-13 2016-09-09 2016-09-09 728622 NR_036619 8646875 601435 +HGNC:50370 SKP1P3 S-phase kinase associated protein 1 pseudogene 3 pseudogene pseudogene Approved 9p12 09p12 2014-04-24 2016-09-09 2016-09-09 100101119 ENSG00000229707 OTTHUMG00000013209 NG_006153 PGOHUM00000257226 +HGNC:10901 SKP2 S-phase kinase associated protein 2 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "FBXL1|FBL1|p45" "S-phase kinase-associated protein 2 (p45)|S-phase kinase-associated protein 2, E3 ubiquitin protein ligase" F-box and leucine rich repeat proteins 558 1995-12-18 2016-09-09 2016-10-05 6502 ENSG00000145604 OTTHUMG00000131106 uc003jkc.3 U33761 NM_005983 "CCDS3915|CCDS3916|CCDS58944" Q13309 8646875 MGI:1351663 RGD:1562456 SKP2 601436 +HGNC:10902 SLA Src-like-adaptor protein-coding gene gene with protein product Approved 8q24.22 08q24.22 SLA1 Src-like-adapter SH2 domain containing 741 1995-08-11 2001-11-28 2015-08-25 6503 ENSG00000155926 OTTHUMG00000164439 uc003ytz.4 XM_017013739 "CCDS6370|CCDS47922|CCDS47923|CCDS64977|CCDS64978" Q13239 "8825655|11179692" MGI:104295 RGD:631373 SLA 601099 +HGNC:17329 SLA2 Src like adaptor 2 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "FLJ21992|SLAP-2" C20orf156 Src-like-adaptor 2 SH2 domain containing 741 2001-12-19 2016-06-17 2016-06-17 84174 ENSG00000101082 OTTHUMG00000032393 uc002xfv.4 AF326353 NM_175077 "CCDS13282|CCDS13283" Q9H6Q3 11696592 MGI:1925049 RGD:1562071 SLA2 606577 +HGNC:26387 SLAIN1 SLAIN motif family member 1 protein-coding gene gene with protein product Approved 13q22.3 13q22.3 FLJ30046 C13orf32 chromosome 13 open reading frame 32 2006-08-08 2006-09-12 2015-11-13 2016-04-25 122060 ENSG00000139737 OTTHUMG00000017110 uc001vkm.3 AK054608 NM_144595 "CCDS31995|CCDS55901|CCDS73588|CCDS73589|CCDS9460" Q8ND83 16546155 MGI:2145578 RGD:1308626 SLAIN1 610491 +HGNC:29282 SLAIN2 SLAIN motif family member 2 protein-coding gene gene with protein product Approved 4p11 04p11 FLJ21611 KIAA1458 KIAA1458 2006-08-08 2006-09-12 2015-11-13 2016-10-05 57606 ENSG00000109171 OTTHUMG00000161701 uc003gya.5 BC006139 NM_020846 CCDS47051 Q9P270 16546155 MGI:1923241 RGD:1311593 SLAIN2 610492 +HGNC:10903 SLAMF1 signaling lymphocytic activation molecule family member 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 CD150 SLAM signaling lymphocytic activation molecule "CD molecules|Immunoglobulin like domain containing" "471|594" 1998-08-06 2003-10-31 2003-10-29 2014-11-18 6504 ENSG00000117090 OTTHUMG00000024006 uc001fwl.6 U33017 XM_017002129 "CCDS1207|CCDS81389" Q13291 7617038 MGI:1351314 RGD:1560634 SLAMF1 603492 CD150 +HGNC:21392 SLAMF6 SLAM family member 6 protein-coding gene gene with protein product Approved 1q23.2-q23.3 01q23.2-q23.3 "KALI|NTBA|KALIb|Ly108|SF2000|NTB-A|CD352" "CD molecules|V-set domain containing|Immunoglobulin like domain containing" "471|590|594" 2003-10-29 2016-10-11 114836 ENSG00000162739 OTTHUMG00000022729 uc001fwd.2 AL832854 NM_052931 "CCDS1205|CCDS53393|CCDS53394" Q96DU3 11489943 MGI:1353620 RGD:1561848 SLAMF6 606446 +HGNC:32012 SLAMF6P1 SLAM family member 6 pseudogene 1 pseudogene pseudogene Approved 1q23.3 01q23.3 2011-08-11 2011-08-11 100862852 ENSG00000227243 OTTHUMG00000031372 NG_032142 PGOHUM00000245049 +HGNC:21394 SLAMF7 SLAM family member 7 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "CRACC|19A|CS1|CD319" "CD molecules|V-set domain containing" "471|590" 2003-10-29 2016-10-05 57823 ENSG00000026751 OTTHUMG00000024008 uc001fwq.5 AB027233 NM_021181 "CCDS1209|CCDS60321|CCDS60322|CCDS60323|CCDS60324|CCDS60325|CCDS72956|CCDS72957" Q9NQ25 "11802771|11220635" MGI:1922595 RGD:1560190 SLAMF7 606625 objectId:2850 CD319 +HGNC:21391 SLAMF8 SLAM family member 8 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "BLAME|SBBI42|CD353" "CD molecules|Immunoglobulin like domain containing" "471|594" 2003-10-29 2016-10-05 56833 ENSG00000158714 OTTHUMG00000035433 uc001fue.5 AF146761 NM_020125 "CCDS1188|CCDS81387" Q9P0V8 11313408 MGI:1921998 RGD:1306263 SLAMF8 606620 +HGNC:18430 SLAMF9 SLAM family member 9 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "CD2F-10|CD84-H1|SF2001" V-set domain containing 590 2003-10-29 2016-10-05 89886 ENSG00000162723 OTTHUMG00000024074 uc001fus.3 AY034613 NM_033438 "CCDS1191|CCDS53392" Q96A28 11685473 MGI:1923692 RGD:1305945 SLAMF9 608589 +HGNC:10904 SLBP stem-loop binding protein protein-coding gene gene with protein product Approved 4p16.3 04p16.3 HBP histone binding protein stem-loop (histone) binding protein 2000-06-15 2008-02-11 2014-11-19 7884 ENSG00000163950 OTTHUMG00000089349 uc003gdi.2 Z71188 NM_006527 "CCDS3350|CCDS77889|CCDS82903" Q14493 "9049306|1338771" MGI:108402 RGD:1584682 SLBP 602422 +HGNC:10939 SLC1A1 solute carrier family 1 member 1 protein-coding gene gene with protein product Approved 9p24.2 09p24.2 "EAAC1|EAAT3" solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 Solute carriers 752 1994-02-15 2016-02-17 2016-10-05 6505 ENSG00000106688 OTTHUMG00000019468 uc003zij.3 XM_011518008 CCDS6452 P43005 8020993 MGI:105083 RGD:3696 SLC1A1 133550 SLC1A1 353548 objectId:870 +HGNC:10940 SLC1A2 solute carrier family 1 member 2 protein-coding gene gene with protein product Approved 11p13 11p13 "GLT-1|EAAT2" solute carrier family 1 (glial high affinity glutamate transporter), member 2 Solute carriers 752 1994-02-15 2016-02-17 2016-02-17 6506 ENSG00000110436 OTTHUMG00000044391 uc001mwd.4 AB209444 NM_004171 "CCDS31459|CCDS55756" P43004 1448170 MGI:101931 RGD:3697 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ SLC1A2 600300 SLC1A2 objectId:869 +HGNC:10941 SLC1A3 solute carrier family 1 member 3 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "EAAT1|GLAST|EA6" glutamate transporter variant EAAT1ex9skip solute carrier family 1 (glial high affinity glutamate transporter), member 3 Solute carriers 752 1994-02-15 2016-02-17 2016-10-05 6507 ENSG00000079215 OTTHUMG00000090793 uc003jkj.4 NM_004172 "CCDS3919|CCDS54844|CCDS78003|CCDS78004" P43003 "7521911|7698014" MGI:99917 RGD:3698 SLC1A3 600111 SLC1A3 212892 objectId:868 +HGNC:10942 SLC1A4 solute carrier family 1 member 4 protein-coding gene gene with protein product Approved 2p14 02p14 "SATT|ASCT1" alanine/serine/cysteine/threonine transporter solute carrier family 1 (glutamate/neutral amino acid transporter), member 4 Solute carriers 752 1993-12-16 2016-02-17 2016-02-17 6509 ENSG00000115902 OTTHUMG00000129537 uc010yqa.3 NM_003038 "CCDS1879|CCDS54362" P43007 "7896285|8910405" MGI:2135601 RGD:735146 SLC1A4 600229 SLC1A4 457197 objectId:873 +HGNC:10943 SLC1A5 solute carrier family 1 member 5 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "AAAT|ASCT2" "RDRC|M7V1" solute carrier family 1 (neutral amino acid transporter), member 5 "Solute carriers|Minor histocompatibility antigens" "752|870" 1994-09-27 2016-02-17 2016-02-17 6510 ENSG00000105281 OTTHUMG00000183434 uc002pfs.4 U53347 XM_005259167 "CCDS12692|CCDS46125|CCDS46126" Q15758 "8702519|10051606" MGI:105305 RGD:708512 SLC1A5 109190 SLC1A5 objectId:874 +HGNC:10944 SLC1A6 solute carrier family 1 member 6 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 EAAT4 solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6 Solute carriers 752 1997-02-05 2016-02-17 2016-02-17 6511 ENSG00000105143 OTTHUMG00000183351 uc002naa.3 NM_005071 "CCDS12321|CCDS62578" P48664 7791878 MGI:1096331 RGD:620340 SLC1A6 600637 SLC1A6 objectId:871 +HGNC:10945 SLC1A7 solute carrier family 1 member 7 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 EAAT5 solute carrier family 1 (glutamate transporter), member 7 Solute carriers 752 1996-11-15 2016-02-17 2016-02-17 6512 ENSG00000162383 OTTHUMG00000008937 uc001cuy.5 U76362 NM_006671 "CCDS574|CCDS72796|CCDS72797|CCDS72798" O00341 9108121 MGI:2444087 RGD:1311928 SLC1A7 604471 SLC1A7 objectId:872 +HGNC:11005 SLC2A1 solute carrier family 2 member 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "DYT18|DYT9" "GLUT1|GLUT|HTLVR|CSE" "human T-cell leukemia virus (I and II) receptor|choreoathetosis/spasticity, episodic (paroxysmal choreoathetosis/spasticity)|solute carrier family 2 (facilitated glucose transporter), member 1" Solute carriers 752 1994-11-18 2016-02-17 2016-02-17 6513 ENSG00000117394 OTTHUMG00000007657 uc001cik.3 K03195 NM_006516 CCDS477 P11166 "8839927|14622599|18451999|21832227" MGI:95755 RGD:3704 SLC2A1 "138140|143090" SLC2A1 158410 objectId:875 +HGNC:44187 SLC2A1-AS1 SLC2A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p34.2 01p34.2 SLC2A1 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 440584 ENSG00000227533 OTTHUMG00000007699 uc001cil.3 AK056786 NR_033967 +HGNC:11006 SLC2A2 solute carrier family 2 member 2 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 GLUT2 solute carrier family 2 (facilitated glucose transporter), member 2 Solute carriers 752 1989-01-13 2016-02-17 2016-02-17 6514 ENSG00000163581 OTTHUMG00000158997 uc003fhe.2 J03810 NM_000340 CCDS3215 P11168 1852621 MGI:1095438 RGD:3705 SLC2A2 138160 SLC2A2 118828 objectId:876 +HGNC:11007 SLC2A3 solute carrier family 2 member 3 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 GLUT3 solute carrier family 2 (facilitated glucose transporter), member 3 Solute carriers 752 1989-03-09 2016-02-17 2016-10-05 6515 ENSG00000059804 OTTHUMG00000133685 uc001qtr.4 M20681 NM_006931 CCDS8586 P11169 MGI:95757 RGD:3706 SLC2A3 138170 SLC2A3 406394 objectId:877 +HGNC:11008 SLC2A3P1 solute carrier family 2 member 3 pseudogene 1 pseudogene pseudogene Approved 5q34 05q34 "GLUT6|GLUT3P1|SLC2A3P" "solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene|solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 1" 1994-05-25 2004-01-28 2016-02-17 2016-02-17 100128062 ENSG00000253861 OTTHUMG00000163047 M55536 NG_008263 11882521 SLC2A3P1 +HGNC:31074 SLC2A3P2 solute carrier family 2 member 3 pseudogene 2 pseudogene pseudogene Approved 1p31.3 01p31.3 solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 2 2004-01-26 2016-02-17 2016-02-17 391045 ENSG00000185031 OTTHUMG00000009309 AC025866 NG_005841 11882521 SLC2A3P2 PGOHUM00000244056 +HGNC:31076 SLC2A3P4 solute carrier family 2 member 3 pseudogene 4 pseudogene pseudogene Approved 8q21.3 08q21.3 solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 4 2004-01-26 2016-02-17 2016-02-17 399495 ENSG00000254088 OTTHUMG00000163721 AC103817 NG_009577 SLC2A3P4 PGOHUM00000249736 +HGNC:11009 SLC2A4 solute carrier family 2 member 4 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 GLUT4 solute carrier family 2 (facilitated glucose transporter), member 4 Solute carriers 752 1989-03-06 2016-02-17 2016-10-05 6517 ENSG00000181856 OTTHUMG00000102181 uc002gfp.4 M20747 NM_001042 CCDS11097 P14672 MGI:95758 RGD:2711 SLC2A4 138190 SLC2A4 objectId:878 +HGNC:15930 SLC2A4RG SLC2A4 regulator protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "GEF|HDBP1|Si-1-2|Si-1-2-19" "GLUT4 enhancer factor|Huntington's disease gene regulatory region-binding protein 1" 2001-06-21 2014-11-18 56731 ENSG00000125520 OTTHUMG00000032997 uc002ygq.4 AF249267 NM_020062 CCDS13537 Q9NR83 10825161 SLC2A4RG 609493 +HGNC:11010 SLC2A5 solute carrier family 2 member 5 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 GLUT5 solute carrier family 2 (facilitated glucose/fructose transporter), member 5 Solute carriers 752 1994-05-25 2016-02-17 2016-10-05 6518 ENSG00000142583 OTTHUMG00000001771 uc001apo.4 BC001820 NM_003039 "CCDS99|CCDS44054" P22732 9691177 MGI:1928369 RGD:68328 SLC2A5 138230 SLC2A5 objectId:880 +HGNC:11011 SLC2A6 solute carrier family 2 member 6 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "GLUT9|GLUT6|HSA011372" solute carrier family 2 (facilitated glucose transporter), member 6 Solute carriers 752 1999-09-07 2016-02-17 2016-10-05 11182 ENSG00000160326 OTTHUMG00000020874 uc004cee.4 AJ011372 NM_017585 "CCDS6975|CCDS48052" Q9UGQ3 10970791 MGI:2443286 RGD:1309317 SLC2A6 606813 SLC2A6 objectId:884 +HGNC:13445 SLC2A7 solute carrier family 2 member 7 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 GLUT7 intestinal facilitative glucose transporter 7 solute carrier family 2 (facilitated glucose transporter), member 7 Solute carriers 752 2001-11-02 2016-02-17 2016-10-05 155184 ENSG00000197241 OTTHUMG00000057499 uc009vmo.1 AL356306 NM_207420 CCDS98 Q6PXP3 11780753 MGI:3650865 RGD:1583902 SLC2A7 610371 SLC2A7 objectId:881 +HGNC:13812 SLC2A8 solute carrier family 2 member 8 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "GLUTX1|GLUT8" "solute carrier family 2 (facilitated glucose transporter) member 8|solute carrier family 2 (facilitated glucose transporter), member 8" Solute carriers 752 2000-11-09 2016-02-17 2016-02-17 29988 ENSG00000136856 OTTHUMG00000020702 uc004bqu.5 AJ245937 NM_014580 "CCDS6870|CCDS65138|CCDS75903" Q9NY64 "10671487|10821868" MGI:1860103 RGD:620611 SLC2A8 605245 SLC2A8 objectId:885 +HGNC:13446 SLC2A9 solute carrier family 2 member 9 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "Glut9|GLUTX|URATv1" urate voltage-driven efflux transporter 1 solute carrier family 2 (facilitated glucose transporter), member 9 Solute carriers 752 2000-09-28 2016-02-17 2016-02-17 56606 ENSG00000109667 OTTHUMG00000044263 uc003gmc.4 AF210317 XM_011513856 "CCDS3406|CCDS3407" Q9NRM0 "10860667|17710649" MGI:2152844 RGD:1597012 SLC2A9 606142 SLC2A9 171045 objectId:882 +HGNC:13444 SLC2A10 solute carrier family 2 member 10 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 GLUT10 solute carrier family 2 (facilitated glucose transporter), member 10 Solute carriers 752 2001-04-02 2016-02-17 2016-02-17 81031 ENSG00000197496 OTTHUMG00000032657 uc002xsl.4 AL137188 XM_011529060 CCDS13402 O95528 11247674 MGI:2156687 RGD:1306552 SLC2A10 606145 SLC2A10 118825 objectId:886 +HGNC:14239 SLC2A11 solute carrier family 2 member 11 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "GLUT11|GLUT10" solute carrier family 2 (facilitated glucose transporter), member 11 Solute carriers 752 2001-02-14 2016-02-17 2016-02-17 66035 ENSG00000133460 OTTHUMG00000166469 uc002zyn.6 AJ271290 NM_030807 "CCDS13818|CCDS33616|CCDS46673|CCDS74828" Q9BYW1 SLC2A11 610367 SLC2A11 objectId:883 +HGNC:18067 SLC2A12 solute carrier family 2 member 12 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "GLUT12|GLUT8" solute carrier family 2 (facilitated glucose transporter), member 12 Solute carriers 752 2002-01-24 2016-02-17 2016-02-17 154091 ENSG00000146411 OTTHUMG00000015611 uc003qem.2 AL035699 XM_006715349 CCDS5169 Q8TD20 "11780753|11832379" MGI:3052471 RGD:1310175 SLC2A12 610372 SLC2A12 objectId:887 +HGNC:15956 SLC2A13 solute carrier family 2 member 13 protein-coding gene gene with protein product Approved 12q12 12q12 HMIT H(+)-myo-inositol symporter solute carrier family 2 (facilitated glucose transporter), member 13 Solute carriers 752 2001-11-02 2016-02-17 2016-02-17 114134 ENSG00000151229 OTTHUMG00000059743 uc010skm.2 AJ315644 XM_011537847 CCDS8736 Q96QE2 11500374 MGI:2146030 RGD:621814 SLC2A13 611036 SLC2A13 objectId:888 +HGNC:48929 SLC2A13P1 SLC2A13 pseudogene 1 pseudogene pseudogene Approved 8q12.1 08q12.1 2013-07-15 2013-07-15 106480239 ENSG00000254954 OTTHUMG00000165324 NG_043800 PGOHUM00000249685 +HGNC:18301 SLC2A14 solute carrier family 2 member 14 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 GLUT14 SLC2A3P3 "solute carrier family 2 (facilitated glucose transporter), member 3 pseudogene 3|solute carrier family 2 (facilitated glucose transporter), member 14" Solute carriers 752 2003-03-05 2016-02-17 2016-02-17 144195 ENSG00000173262 OTTHUMG00000168463 uc001qtk.5 AF481878 NM_153449 "CCDS8585|CCDS66300|CCDS66301|CCDS66302" Q8TDB8 12504846 SLC2A14 611039 SLC2A14 objectId:879 +HGNC:31077 SLC2AXP1 solute carrier family 2 pseudogene 1 pseudogene pseudogene Approved 2q11.1 02q11.1 solute carrier family 2 (facilitated glucose transporter), pseudogene 1 2004-01-26 2016-02-17 2016-02-17 399496 ENSG00000275768 OTTHUMG00000187613 AC026626 NG_011411.1 11882521 SLC2AXP1 PGOHUM00000298016 +HGNC:11025 SLC3A1 solute carrier family 3 member 1 protein-coding gene gene with protein product Approved 2p21 02p21 "CSNU1|D2H|RBAT|ATR1|NBAT" "solute carrier family 3 (cystine, dibasic and neutral amino acid transporters, activator of cystine, dibasic and neutral amino acid transport), member 1|solute carrier family 3 (amino acid transporter heavy chain), member 1" Solute carriers 752 1993-12-16 2016-02-17 2016-10-05 6519 ENSG00000138079 OTTHUMG00000128759 uc002ruc.5 NM_000341 CCDS1819 Q07837 "8486766|9186880" MGI:1195264 RGD:3709 SLC3A1 104614 SLC3A1 123426 objectId:889 +HGNC:11026 SLC3A2 solute carrier family 3 member 2 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "4T2HC|4F2|NACAE|CD98|CD98HC|4F2HC" "antigen identified by monoclonal antibodies 4F2, TRA1.10, TROP4, and T43|antigen defined by monoclonal antibody 4F2|heavy chain|4F2 heavy chain|CD98 heavy chain|monoclonal antibody 44D7|4F2 cell-surface antigen heavy chain|lymphocyte activation antigen 4F2 large subunit" MDU1 "solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2|solute carrier family 3 (amino acid transporter heavy chain), member 2" Solute carriers 752 1994-02-15 2016-02-17 2016-02-17 6520 ENSG00000168003 OTTHUMG00000074091 uc001nwf.4 NM_001012661 "CCDS8039|CCDS31588|CCDS31589|CCDS31590" P08195 3036867 MGI:96955 RGD:3073 SLC3A2 158070 SLC3A2 objectId:890 +HGNC:11027 SLC4A1 solute carrier family 4 member 1 (Diego blood group) protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "RTA1A|CD233|FR|SW|WR" "Froese blood group|Swann blood group|Wright blood group" "EPB3|AE1|DI|WD" "Waldner blood group|erythrocyte membrane protein band 3|Diego blood group|solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)|solute carrier family 4 (anion exchanger), member 1|solute carrier family 4 (anion exchanger), member 1 (Diego blood group)" "Blood group antigens|CD molecules|Solute carriers" "454|471|752" 1988-04-20 2016-02-17 2016-10-12 6521 ENSG00000004939 OTTHUMG00000156843 uc002igf.5 NM_000342 CCDS11481 P02730 8434259 MGI:109393 RGD:3710 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_803|http://www.lrg-sequence.org/LRG/LRG_803" SLC4A1 109270 SLC4A1 119669 objectId:904 CD233 +HGNC:13813 SLC4A1AP solute carrier family 4 member 1 adaptor protein protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "kanadaptin|HLC3" lung cancer oncogene 3 "solute carrier family 4 (anion exchanger), member 1, adapter protein|solute carrier family 4 (anion exchanger), member 1, adaptor protein" 2000-11-09 2016-02-17 2016-02-17 22950 ENSG00000163798 OTTHUMG00000151944 uc061hrh.1 NM_018158 CCDS33166 Q9BWU0 9422766 MGI:1196608 RGD:1307080 SLC4A1AP 602655 +HGNC:49811 SLC4A1APP1 solute carrier family 4 member 1 adaptor protein pseudogene 1 pseudogene pseudogene Approved 9p21.1 09p21.1 solute carrier family 4 (anion exchanger), member 1, adaptor protein pseudogene 1 2014-03-06 2016-02-17 2016-02-17 100288436 ENSG00000232060 OTTHUMG00000019728 NG_021610 PGOHUM00000236000 +HGNC:49812 SLC4A1APP2 solute carrier family 4 member 1 adaptor protein pseudogene 2 pseudogene pseudogene Approved 1q31.1 01q31.1 solute carrier family 4 (anion exchanger), member 1, adaptor protein pseudogene 2 2014-03-06 2016-02-17 2016-02-17 100422527 ENSG00000236401 OTTHUMG00000035625 NG_027181 PGOHUM00000245127 +HGNC:11028 SLC4A2 solute carrier family 4 member 2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "HKB3|BND3L|NBND3" "anion exchanger 2 type a|anion exchanger 2 type b1|anion exchanger 2 type b2" "EPB3L1|AE2" "erythrocyte membrane protein band 3-like 1|solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1)|solute carrier family 4 (anion exchanger), member 2" Solute carriers 752 1986-01-01 2016-02-17 2016-02-17 6522 ENSG00000164889 OTTHUMG00000158443 uc022apz.2 NM_003040 "CCDS5917|CCDS56520|CCDS56521" P04920 8434259 MGI:109351 RGD:3711 SLC4A2 109280 SLC4A2 objectId:905 +HGNC:11029 SLC4A3 solute carrier family 4 member 3 protein-coding gene gene with protein product Approved 2q35 02q35 "AE3|SLC2C" Anion exchanger 3, neuronal "solute carrier family 4, anion exchanger, member 3|solute carrier family 4 (anion exchanger), member 3" Solute carriers 752 1994-08-10 2016-02-17 2016-02-17 6508 ENSG00000114923 OTTHUMG00000059238 uc002vmo.5 NM_005070 "CCDS2445|CCDS2446" P48751 8001971 MGI:109350 RGD:3712 SLC4A3 106195 SLC4A3 objectId:906 +HGNC:11030 SLC4A4 solute carrier family 4 member 4 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "NBC1|HNBC1|NBC2|pNBC|hhNMC" SLC4A5 "solute carrier family 4, sodium bicarbonate cotransporter, member 4|solute carrier family 4 (sodium bicarbonate cotransporter), member 4" Solute carriers 752 1998-12-11 2016-02-17 2016-02-17 8671 ENSG00000080493 OTTHUMG00000129907 uc003hfy.4 AF007216 NM_003759 "CCDS3549|CCDS43236|CCDS47071" Q9Y6R1 "9235899|9651366" MGI:1927555 RGD:68936 SLC4A4 603345 SLC4A4 119685 objectId:908 +HGNC:18168 SLC4A5 solute carrier family 4 member 5 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 NBC4 "solute carrier family 4, sodium bicarbonate cotransporter, member 5|solute carrier family 4 (sodium bicarbonate cotransporter), member 5" Solute carriers 752 2002-03-06 2016-02-17 2016-02-17 57835 ENSG00000188687 OTTHUMG00000090263 uc061ktd.1 AF243499 NM_133478 "CCDS1936|CCDS1937" Q9BY07 "10978526|11087115" MGI:2443220 RGD:1303009 SLC4A5 606757 SLC4A5 objectId:909 +HGNC:11033 SLC4A7 solute carrier family 4 member 7 protein-coding gene gene with protein product Approved 3p24.1 03p24.1 "NBC3|SBC2" SLC4A6 solute carrier family 4, sodium bicarbonate cotransporter, member 7 Solute carriers 752 1999-04-16 2016-02-17 2016-02-17 9497 ENSG00000033867 OTTHUMG00000155679 uc011axa.4 AB012130 NM_003615 "CCDS33721|CCDS58819|CCDS58820|CCDS82747|CCDS82748|CCDS82749|CCDS82750|CCDS82751" Q9Y6M7 "10198178|9610397" MGI:2443878 RGD:621208 SLC4A7 603353 SLC4A7 objectId:910 +HGNC:21433 SLC4A7OS entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-02 +HGNC:11034 SLC4A8 solute carrier family 4 member 8 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 NBC3 solute carrier family 4, sodium bicarbonate cotransporter, member 8 Solute carriers 752 1999-04-16 2016-02-17 2016-02-17 9498 ENSG00000050438 OTTHUMG00000169489 uc001rys.3 AB018282 NM_004858 "CCDS44890|CCDS58232|CCDS58233|CCDS73470" Q2Y0W8 11133997 MGI:1928745 RGD:735164 SLC4A8 605024 SLC4A8 objectId:912 +HGNC:11035 SLC4A9 solute carrier family 4 member 9 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 AE4 solute carrier family 4, sodium bicarbonate cotransporter, member 9 Solute carriers 752 1999-12-16 2016-02-17 2016-02-17 83697 ENSG00000113073 OTTHUMG00000163352 uc003lfl.3 AF313465 NM_031467 "CCDS47278|CCDS58973|CCDS58974|CCDS58975" Q96Q91 11305939 MGI:2443384 RGD:628811 SLC4A9 610207 SLC4A9 objectId:907 +HGNC:13811 SLC4A10 solute carrier family 4 member 10 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "NBCn2|NCBE" "solute carrier family 4, sodium bicarbonate transporter-like, member 10|solute carrier family 4, sodium bicarbonate transporter, member 10" Solute carriers 752 2000-11-09 2016-02-17 2016-02-17 57282 ENSG00000144290 OTTHUMG00000153938 uc002uby.5 NM_022058 "CCDS46438|CCDS54411|CCDS54412" Q6U841 "10964153|18319254" MGI:2150150 RGD:631407 SLC4A10 605556 SLC4A10 objectId:911 +HGNC:16438 SLC4A11 solute carrier family 4 member 11 protein-coding gene gene with protein product Approved 20p13 20p13 "dJ794I6.2|BTR1|NaBC1|FECD4" "CHED2|CDPD1" "corneal endothelial dystrophy 2 (autosomal recessive)|solute carrier family 4, sodium bicarbonate transporter-like, member 11|corneal dystrophy and perceptive deafness 1|solute carrier family 4, sodium borate transporter, member 11" Solute carriers 752 2001-11-02 2016-02-17 2016-02-17 83959 ENSG00000088836 OTTHUMG00000031740 uc002wig.3 AF336127 XM_005260856 "CCDS13052|CCDS54445|CCDS54446" Q8NBS3 "10843999|11302728|16767101" MGI:2138987 RGD:1310188 SLC4A11 610206 SLC4A11 119680 objectId:913 +HGNC:11036 SLC5A1 solute carrier family 5 member 1 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "D22S675|NAGT" sodium/glucose cotransporter 1 SGLT1 solute carrier family 5 (sodium/glucose cotransporter), member 1 Solute carriers 752 1988-08-05 2016-02-17 2016-02-17 6523 ENSG00000100170 OTTHUMG00000030768 uc003amc.4 NM_000343 "CCDS13902|CCDS58805" P13866 8195156 MGI:107678 RGD:3713 SLC5A1 182380 SLC5A1 119693 objectId:915 +HGNC:11037 SLC5A2 solute carrier family 5 member 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 SGLT2 solute carrier family 5 (sodium/glucose cotransporter), member 2 Solute carriers 752 1993-08-24 2016-02-17 2016-02-17 6524 ENSG00000140675 OTTHUMG00000176620 uc002ecf.5 XM_006721072 CCDS10714 P31639 8244402 MGI:2181411 RGD:620217 SLC5A2 182381 SLC5A2 119697 objectId:916 +HGNC:11038 SLC5A3 solute carrier family 5 member 3 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "SMIT|SMIT1" "solute carrier family 5 (inositol transporter), member 3|solute carrier family 5 (sodium/myo-inositol cotransporter), member 3" Solute carriers 752 1994-02-15 2016-02-17 2016-02-17 6526 ENSG00000198743 OTTHUMG00000065821 uc002yto.4 NM_006933 CCDS33549 P53794 7789985 MGI:1858226 RGD:621530 SLC5A3 600444 SLC5A3 objectId:924 +HGNC:11039 SLC5A4 solute carrier family 5 member 4 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "SAAT1|SGLT3|DJ90G24.4" "solute carrier family 5 (low affinity glucose cotransporter), member 4|solute carrier family 5 (glucose activated ion channel), member 4" Solute carriers 752 1994-02-15 2016-02-17 2016-02-17 6527 ENSG00000100191 OTTHUMG00000150007 uc003ami.4 U41897 NM_014227 CCDS13903 Q9NY91 "9501190|12354616" MGI:1927848 RGD:1306923 SLC5A4 SLC5A4 objectId:917 +HGNC:45041 SLC5A4P1 solute carrier family 5 member 4 pseudogene 1 pseudogene pseudogene Approved 11q24.2 11q24.2 "solute carrier family 5 (low affinity glucose cotransporter), member 4 pseudogene 1|solute carrier family 5 (glucose activated ion channel), member 4 pseudogene 1" 2013-01-25 2016-02-17 2016-02-17 100422550 ENSG00000255116 OTTHUMG00000165976 NG_024564 PGOHUM00000242921 +HGNC:11040 SLC5A5 solute carrier family 5 member 5 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 NIS "solute carrier family 5 (sodium iodide symporter), member 5|solute carrier family 5 (sodium/iodide cotransporter), member 5" Solute carriers 752 1997-04-16 2016-02-17 2016-02-17 6528 ENSG00000105641 OTTHUMG00000183447 uc002nhr.4 XM_011528192 CCDS12368 Q92911 9231811 MGI:2149330 RGD:69267 SLC5A5 601843 SLC5A5 119700 objectId:920 +HGNC:11041 SLC5A6 solute carrier family 5 member 6 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 SMVT "solute carrier family 5 (sodium-dependent vitamin transporter), member 6|solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6" Solute carriers 752 1999-01-19 2016-02-17 2016-10-05 8884 ENSG00000138074 OTTHUMG00000097075 uc002rjd.4 AF069307 NM_021095 CCDS1740 Q9Y289 "9516450|10329687" MGI:2660847 RGD:69648 SLC5A6 604024 SLC5A6 objectId:921 +HGNC:14025 SLC5A7 solute carrier family 5 member 7 protein-coding gene gene with protein product Approved 2q12.3 02q12.3 "hCHT|CHT1" "solute carrier family 5 (choline transporter), member 7|solute carrier family 5 (sodium/choline cotransporter), member 7" Solute carriers 752 2000-11-27 2016-02-17 2016-10-05 60482 ENSG00000115665 OTTHUMG00000130959 uc002tdv.4 AF276871 XM_017004628 CCDS2074 Q9GZV3 11027560 MGI:1927126 RGD:69270 SLC5A7 608761 SLC5A7 320785 objectId:914 +HGNC:19119 SLC5A8 solute carrier family 5 member 8 protein-coding gene gene with protein product Approved 12q23.1-q23.2 12q23.1-q23.2 AIT "solute carrier family 5 (iodide transporter), member 8|solute carrier family 5 (sodium/monocarboxylate cotransporter), member 8" Solute carriers 752 2003-05-12 2016-02-17 2016-10-11 160728 ENSG00000256870 OTTHUMG00000170499 uc001thz.5 AY081220 NM_145913 CCDS9080 Q8N695 "12107270|12829793" MGI:2384916 RGD:1564146 SLC5A8 608044 SLC5A8 objectId:922 +HGNC:22146 SLC5A9 solute carrier family 5 member 9 protein-coding gene gene with protein product Approved 1p33 01p33 SGLT4 "solute carrier family 5 (sodium/glucose cotransporter), member 9|solute carrier family 5 (sodium/sugar cotransporter), member 9" Solute carriers 752 2004-03-11 2016-02-17 2016-02-17 200010 ENSG00000117834 OTTHUMG00000007959 uc001crn.3 BX648549 XM_117174 "CCDS30709|CCDS44136" Q2M3M2 MGI:2140201 RGD:1311383 SLC5A9 SLC5A9 objectId:918 +HGNC:23155 SLC5A10 solute carrier family 5 member 10 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 SGLT5 "solute carrier family 5 (sodium/glucose cotransporter), member 10|solute carrier family 5 (sodium/sugar cotransporter), member 10" Solute carriers 752 2004-01-28 2016-02-17 2016-02-17 125206 ENSG00000154025 OTTHUMG00000178143 uc002guu.3 NM_152351 "CCDS11201|CCDS42275|CCDS59277|CCDS59278|CCDS74008" A0PJK1 MGI:1926089 RGD:1305232 SLC5A10 SLC5A10 objectId:919 +HGNC:23091 SLC5A11 solute carrier family 5 member 11 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "KST1|SMIT2|SGLT6" "solute carrier family 5 (sodium/glucose cotransporter), member 11|solute carrier family 5 (sodium/inositol cotransporter), member 11" Solute carriers 752 2004-03-23 2016-02-17 2016-02-17 115584 ENSG00000158865 OTTHUMG00000097003 uc002dmu.5 AF292385 NM_052944 "CCDS10625|CCDS58437|CCDS58438|CCDS58439|CCDS58440" Q8WWX8 "12039040|12133831" MGI:1919316 RGD:621410 SLC5A11 610238 SLC5A11 objectId:925 +HGNC:28750 SLC5A12 solute carrier family 5 member 12 protein-coding gene gene with protein product Approved 11p14.2 11p14.2 "MGC52019|SMCT2" "solute carrier family 5 (sodium/glucose cotransporter), member 12|solute carrier family 5 (sodium/monocarboxylate cotransporter), member 12" Solute carriers 752 2004-09-01 2016-02-17 2016-02-17 159963 ENSG00000148942 OTTHUMG00000150706 uc001mra.3 BC049207 NM_178498 CCDS7860 Q1EHB4 12477932 MGI:2138890 RGD:1311652 SLC5A12 612455 SLC5A12 objectId:923 +HGNC:11042 SLC6A1 solute carrier family 6 member 1 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "GAT1|GABATR|GABATHG" GABA transporter 1 "solute carrier family 6 (neurotransmitter transporter, GABA), member 1|solute carrier family 6 (neurotransmitter transporter), member 1" Solute carriers 752 1994-02-16 2016-02-17 2016-02-17 6529 ENSG00000157103 OTTHUMG00000044208 uc010hdq.4 NM_003042 CCDS2603 P30531 8530094 MGI:95627 RGD:620533 SLC6A1 137165 SLC6A1 431886 objectId:929 +HGNC:40546 SLC6A1-AS1 SLC6A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 SLC6A1 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874090 ENSG00000232287 OTTHUMG00000155456 uc031ryk.1 NR_046647 +HGNC:11048 SLC6A2 solute carrier family 6 member 2 protein-coding gene gene with protein product Approved 16q12.2 16q12.2 NET norepinephrine transporter "NET1|NAT1|SLC6A5" "solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2|solute carrier family 6 (neurotransmitter transporter), member 2" Solute carriers 752 1994-03-16 2016-02-17 2016-02-17 6530 ENSG00000103546 OTTHUMG00000133208 uc002eig.3 XM_011523297 "CCDS10754|CCDS54011|CCDS58463" P23975 2008212 MGI:1270850 RGD:621822 SLC6A2 163970 SLC6A2 449814 objectId:926 +HGNC:11049 SLC6A3 solute carrier family 6 member 3 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 DAT dopamine transporter DAT1 "solute carrier family 6 (neurotransmitter transporter, dopamine), member 3|dopamine transporter 1|solute carrier family 6 (neurotransmitter transporter), member 3" Solute carriers 752 1994-03-16 2016-02-17 2016-10-05 6531 ENSG00000142319 OTTHUMG00000131016 uc003jck.4 NM_001044 CCDS3863 Q01959 1406597 MGI:94862 RGD:3715 LOVD - Leiden Open Variation Database|https://grenada.lumc.nl/LOVD2/shared1/home.php?select_db=SLC6A3 SLC6A3 126455 SLC6A3 244693 objectId:927 +HGNC:11050 SLC6A4 solute carrier family 6 member 4 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "5-HTT|SERT1" serotonin transporter 1 "HTT|OCD1" "solute carrier family 6 (neurotransmitter transporter, serotonin), member 4|5-hydroxytryptamine (serotonin) transporter|obsessive-compulsive disorder 1|solute carrier family 6 (neurotransmitter transporter), member 4" Solute carriers 752 1994-03-16 2016-02-17 2016-02-17 6532 ENSG00000108576 OTTHUMG00000132751 uc060dmn.1 L05568 NM_001045 CCDS11256 P31645 "7681602|19806148" MGI:96285 RGD:3714 SLC6A4 182138 SLC6A4 objectId:928 +HGNC:11051 SLC6A5 solute carrier family 6 member 5 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 GLYT2 glycine transporter 2 NET1 "solute carrier family 6 (neurotransmitter transporter, glycine), member 5|solute carrier family 6 (neurotransmitter transporter), member 5" Solute carriers 752 1997-12-05 2016-02-17 2016-02-17 9152 ENSG00000165970 OTTHUMG00000166024 uc001mqd.4 AF085412 NM_004211 CCDS7854 Q9Y345 9845349 MGI:105090 RGD:621824 LOVD - Leiden Open Variation Database|https://grenada.lumc.nl/LOVD2/shared1/home.php?select_db=SLC6A5 SLC6A5 604159 SLC6A5 158412 objectId:936 +HGNC:11052 SLC6A6 solute carrier family 6 member 6 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 TAUT taurine transporter "solute carrier family 6 (neurotransmitter transporter, taurine), member 6|solute carrier family 6 (neurotransmitter transporter), member 6" Solute carriers 752 1994-05-25 2016-02-17 2016-02-17 6533 ENSG00000131389 OTTHUMG00000155525 uc032rfg.2 NM_003043 "CCDS33705|CCDS46765|CCDS77704" P31641 "8010975|8382624" MGI:98488 RGD:61912 SLC6A6 186854 SLC6A6 objectId:933 +HGNC:11053 SLC6A6P1 solute carrier family 6 member 6 pseudogene 1 pseudogene pseudogene Approved 21q21.1 21q21.1 SLC6A6P "solute carrier family 6, member 6 pseudogene|solute carrier family 6, member 6 pseudogene 1" 2000-05-23 2010-02-24 2015-12-04 2015-12-04 54019 ENSG00000226818 OTTHUMG00000074547 NG_000901 SLC6A6P1 PGOHUM00000239149 +HGNC:11054 SLC6A7 solute carrier family 6 member 7 protein-coding gene gene with protein product Approved 5q32 05q32 PROT "brain-specific L-proline transporter|sodium-dependent proline transporter" "solute carrier family 6 (neurotransmitter transporter, L-proline), member 7|solute carrier family 6 (neurotransmitter transporter), member 7" Solute carriers 752 1994-03-16 2016-02-17 2016-02-17 6534 ENSG00000011083 OTTHUMG00000130046 uc003lrr.3 S80071 NM_014228 CCDS4305 Q99884 7651355 MGI:2147363 RGD:620928 SLC6A7 606205 SLC6A7 objectId:938 +HGNC:11055 SLC6A8 solute carrier family 6 member 8 protein-coding gene gene with protein product Approved Xq28 Xq28 "CRTR|CT1" creatine transporter "solute carrier family 6 (neurotransmitter transporter, creatine), member 8|solute carrier family 6 (neurotransmitter transporter), member 8" Solute carriers 752 1994-12-19 2016-02-17 2016-02-17 6535 ENSG00000130821 OTTHUMG00000024208 uc004fib.4 NM_001142805 "CCDS14726|CCDS48190" P48029 7774949 MGI:2147834 RGD:619711 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC6A8|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/vumc/home.php?select_db=SLC6A8" SLC6A8 300036 SLC6A8 119705 objectId:934 +HGNC:11056 SLC6A9 solute carrier family 6 member 9 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 GLYT1 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 Solute carriers 752 1995-10-02 2016-02-17 2016-10-05 6536 ENSG00000196517 OTTHUMG00000008294 uc001cln.5 S70609 NM_201649 "CCDS30695|CCDS41316|CCDS41317" P48067 "8183239|7587377" MGI:95760 RGD:621243 SLC6A9 601019 SLC6A9 objectId:935 +HGNC:11043 SLC6A10P solute carrier family 6 member 10, pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 CT-2 creatine transporter-2 SLC6A10 "solute carrier family 6 (neurotransmitter transporter, creatine), member 10|solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene" Solute carriers 752 1996-03-14 2013-07-19 2016-02-17 2016-02-17 386757 ENSG00000214617 OTTHUMG00000132481 U41163 NR_003083 9154116 SLC6A10P PGOHUM00000262930 +HGNC:11044 SLC6A11 solute carrier family 6 member 11 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 GAT3 GABA transporter 3 "solute carrier family 6 (neurotransmitter transporter, GABA), member 11|solute carrier family 6 (neurotransmitter transporter), member 11" Solute carriers 752 1997-12-05 2016-02-17 2016-02-17 6538 ENSG00000132164 OTTHUMG00000129718 uc003bvz.4 S75989 NM_014229 "CCDS2602|CCDS82734" P48066 7874447 MGI:95630 RGD:628737 SLC6A11 607952 SLC6A11 objectId:931 +HGNC:11045 SLC6A12 solute carrier family 6 member 12 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 BGT-1 betaine/GABA transporter-1 "solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12|solute carrier family 6 (neurotransmitter transporter), member 12" Solute carriers 752 1997-12-09 2016-02-17 2016-10-05 6539 ENSG00000111181 OTTHUMG00000090309 uc001qia.3 L42300 NM_003044 CCDS8501 P48065 7589472 MGI:95628 RGD:620255 SLC6A12 603080 SLC6A12 objectId:932 +HGNC:11046 SLC6A13 solute carrier family 6 member 13 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 GAT2 GABA transporter 2 "solute carrier family 6 (neurotransmitter transporter, GABA), member 13|solute carrier family 6 (neurotransmitter transporter), member 13" Solute carriers 752 1997-12-09 2016-02-17 2016-02-17 6540 ENSG00000010379 OTTHUMG00000168053 uc001qic.3 U76343 NM_016615 "CCDS8502|CCDS53729|CCDS58198" Q9NSD5 MGI:95629 RGD:620788 SLC6A13 615097 SLC6A13 objectId:930 +HGNC:11047 SLC6A14 solute carrier family 6 member 14 protein-coding gene gene with protein product Approved Xq23 Xq23 "solute carrier family 6 (neurotransmitter transporter), member 14|solute carrier family 6 (amino acid transporter), member 14" Solute carriers 752 2000-07-31 2016-02-17 2016-02-17 11254 ENSG00000268104 OTTHUMG00000022245 uc033eru.2 AF151978 NM_007231 CCDS14570 Q9UN76 10446133 MGI:1890216 RGD:1561810 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC6A14 SLC6A14 300444 SLC6A14 objectId:937 +HGNC:13621 SLC6A15 solute carrier family 6 member 15 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 "hv7-3|NTT73|FLJ10316|V7-3|SBAT1" "homolog of rat orphan transporter v7-3|sodium/chloride dependent neurotransmitter transporter Homo sapiens orphan neurotransmitter transporter NTT7" "solute carrier family 6 (neurotransmitter transporter), member 15|solute carrier family 6 (neutral amino acid transporter), member 15" Solute carriers 752 2000-09-27 2016-02-17 2016-02-17 55117 ENSG00000072041 OTTHUMG00000169742 uc001szv.5 AF265577 "NM_018057|NM_182767" "CCDS9026|CCDS9027|CCDS53816" Q9H2J7 "10471414|11112352|16185194" MGI:2143484 RGD:628664 SLC6A15 607971 SLC6A15 objectId:940 +HGNC:13622 SLC6A16 solute carrier family 6 member 16 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 NTT5 NTT5 protein "solute carrier family 6 (neurotransmitter transporter), member 16|solute carrier family 6, member 16" Solute carriers 752 2000-09-27 2015-12-04 2015-12-04 28968 ENSG00000063127 OTTHUMG00000183179 uc002pmz.4 AF265578 NM_014037 CCDS42590 Q9GZN6 "10471414|11112352" MGI:2685930 RGD:1561338 SLC6A16 607972 SLC6A16 objectId:942 +HGNC:31399 SLC6A17 solute carrier family 6 member 17 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "solute carrier family 6 (neurotransmitter transporter), member 17|solute carrier family 6, member 17|solute carrier family 6 (neutral amino acid transporter), member 17" Solute carriers 752 2004-04-02 2016-02-17 2016-10-05 388662 ENSG00000197106 OTTHUMG00000011761 uc009wfq.4 XM_371280 CCDS30799 Q9H1V8 MGI:2442535 RGD:1587185 SLC6A17 610299 SLC6A17 423450 objectId:943 +HGNC:26441 SLC6A18 solute carrier family 6 member 18 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "FLJ31236|Xtrp2" "solute carrier family 6 (neurotransmitter transporter), member 18|solute carrier family 6, member 18|solute carrier family 6 (neutral amino acid transporter), member 18" Solute carriers 752 2004-04-02 2016-02-17 2016-10-05 348932 ENSG00000164363 OTTHUMG00000090356 uc003jby.2 AK055798 NM_182632 CCDS3860 Q96N87 19478081 MGI:1336892 RGD:69352 SLC6A18 610300 SLC6A18 173509 objectId:941 +HGNC:27960 SLC6A19 solute carrier family 6 member 19 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 Hartnup disease solute carrier family 6 (neutral amino acid transporter), member 19 Solute carriers 752 2004-04-02 2016-02-17 2016-10-05 340024 ENSG00000174358 OTTHUMG00000161636 uc003jbw.5 AK096054 XM_291120 CCDS34130 Q695T7 MGI:1921588 RGD:1594328 SLC6A19 608893 SLC6A19 119703 objectId:939 +HGNC:30927 SLC6A20 solute carrier family 6 member 20 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "XT3|Xtrp3" solute carrier family 6 (proline IMINO transporter), member 20 Solute carriers 752 2004-04-02 2016-02-17 2016-10-05 54716 ENSG00000163817 OTTHUMG00000133446 uc011bai.3 AF075260 NM_020208 "CCDS2730|CCDS43077" Q9NP91 "9932288|11352561" "MGI:1336891|MGI:2143217" RGD:621651 SLC6A20 605616 SLC6A20 173505 objectId:944 +HGNC:31400 SLC6A21P solute carrier family 6 member 21, pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 SLC6A21 "solute carrier family 6 (neurotransmitter transporter), member 21|solute carrier family 6 (neurotransmitter transporter), member 21, pseudogene|solute carrier family 6, member 21, pseudogene" Solute carriers 752 2005-12-07 2006-05-10 2015-12-04 2016-07-25 652969 ENSG00000269009 OTTHUMG00000183204 AC008891.7 NG_009578 16125675 MGI:1923963 SLC6A21P PGOHUM00000295061 +HGNC:11057 SLC7A1 solute carrier family 7 member 1 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "CAT-1|HCAT1|REC1L" "ecotropic retroviral receptor|amino acid transporter, cationic 1" "ERR|ATRC1" solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 Solute carriers 752 1994-02-16 2016-02-17 2016-02-17 6541 ENSG00000139514 OTTHUMG00000016658 uc001uso.4 AF078107 NM_003045 CCDS9333 P30825 1348489 MGI:88117 RGD:3716 SLC7A1 104615 SLC7A1 objectId:891 +HGNC:11060 SLC7A2 solute carrier family 7 member 2 protein-coding gene gene with protein product Approved 8p22 08p22 "CAT-2|HCAT2" ATRC2 solute carrier family 7 (cationic amino acid transporter, y+ system), member 2 Solute carriers 752 1996-11-15 2016-02-17 2016-02-17 6542 ENSG00000003989 OTTHUMG00000130819 uc064kns.1 D29990 NM_003046 "CCDS6002|CCDS34852|CCDS55203" P52569 8954799 MGI:99828 RGD:68387 SLC7A2 601872 SLC7A2 objectId:892 +HGNC:11061 SLC7A3 solute carrier family 7 member 3 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "CAT-3|ATRC3|FLJ14541" solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 Solute carriers 752 1997-12-10 2016-02-17 2016-10-05 84889 ENSG00000165349 OTTHUMG00000021780 uc004dyo.4 AF320612 NM_032803 CCDS14404 Q8WY07 11591158 MGI:1100521 RGD:68342 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC7A3 SLC7A3 300443 SLC7A3 objectId:893 +HGNC:11062 SLC7A4 solute carrier family 7 member 4 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "HCAT3|CAT-4|VH" "solute carrier family 7 (cationic amino acid transporter, y+ system), member 4|solute carrier family 7 (orphan transporter), member 4|solute carrier family 7, member 4" Solute carriers 752 1997-12-09 2015-12-08 2015-12-08 6545 ENSG00000099960 OTTHUMG00000150896 uc002zud.3 AJ000730 NM_004173 CCDS33608 O43246 "9598310|11665818" MGI:2146512 RGD:1305905 SLC7A4 603752 SLC7A4 objectId:894 +HGNC:11063 SLC7A5 solute carrier family 7 member 5 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 "LAT1|E16|D16S469E|MPE16|CD98" solute carrier family 7 (amino acid transporter light chain, L system), member 5 "CD molecules|Solute carriers" "471|752" 1999-01-28 2016-02-17 2016-10-05 8140 ENSG00000103257 OTTHUMG00000137658 uc002fkm.4 AF077866 NM_003486 CCDS10964 Q01650 "9751058|7829099" MGI:1298205 RGD:620639 SLC7A5 600182 SLC7A5 objectId:896 CD98 +HGNC:29458 SLC7A5P1 solute carrier family 7 member 5 pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 "LAT1-3TM|MLAS" solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 1 2007-01-12 2016-02-17 2016-02-17 81893 ENSG00000260727 OTTHUMG00000176771 NM_031211 Q8MH63 12009310 SLC7A5P1 SLC7A5P1 PGOHUM00000259042 +HGNC:24951 SLC7A5P2 solute carrier family 7 member 5 pseudogene 2 pseudogene pseudogene Approved 16p12.2 16p12.2 "IMAA|hLAT1-3TM" solute carrier family 7 (amino acid transporter light chain, L system), member 5 pseudogene 2 2010-01-07 2016-02-17 2016-02-17 387254 ENSG00000258186 OTTHUMG00000170388 BC071656 NR_002594.1 Q9GIP4 12009310 SLC7A5P2 PGOHUM00000259021 +HGNC:11064 SLC7A6 solute carrier family 7 member 6 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "y+LAT-2|KIAA0245|LAT3|LAT-2" solute carrier family 7 (amino acid transporter light chain, y+L system), member 6 Solute carriers 752 1999-01-28 2016-02-17 2016-02-17 9057 ENSG00000103064 OTTHUMG00000176544 uc002evu.3 D87432 NM_003983 CCDS32470 Q92536 9878049 MGI:2142598 RGD:1309193 SLC7A6 605641 SLC7A6 objectId:899 +HGNC:25807 SLC7A6OS solute carrier family 7 member 6 opposite strand protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ13291 solute carrier family 7, member 6 opposite strand 2005-09-01 2015-12-08 2015-12-08 84138 ENSG00000103061 OTTHUMG00000137558 uc002evw.3 NM_032178 CCDS10865 Q96CW6 MGI:1916951 RGD:708394 SLC7A6OS +HGNC:11065 SLC7A7 solute carrier family 7 member 7 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 y+LAT-1 LPI solute carrier family 7 (amino acid transporter light chain, y+L system), member 7 Solute carriers 752 1999-01-28 2016-02-17 2016-10-12 9056 ENSG00000155465 OTTHUMG00000028692 uc001wgu.5 AF092032 XM_011537298 CCDS9574 Q9UM01 9829974 MGI:1337120 RGD:619902 LRG_695|http://www.lrg-sequence.org/LRG/LRG_695 SLC7A7 603593 SLC7A7 119709 objectId:898 +HGNC:11066 SLC7A8 solute carrier family 7 member 8 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "LPI-PC1|LAT2" solute carrier family 7 (amino acid transporter light chain, L system), member 8 Solute carriers 752 1999-10-05 2016-02-17 2016-02-17 23428 ENSG00000092068 OTTHUMG00000028720 uc001wiz.5 Y18483 NM_001267036 "CCDS9590|CCDS41924|CCDS58304|CCDS58305" Q9UHI5 "10080183|10391915" MGI:1355323 RGD:619904 SLC7A8 604235 SLC7A8 objectId:897 +HGNC:11067 SLC7A9 solute carrier family 7 member 9 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 CSNU3 solute carrier family 7 (amino acid transporter light chain, bo,+ system), member 9 Solute carriers 752 1999-09-16 2016-02-17 2016-02-17 11136 ENSG00000021488 OTTHUMG00000180287 uc002ntu.6 AF141289 XM_011526402 CCDS12425 P82251 10471498 MGI:1353656 RGD:619905 SLC7A9 604144 SLC7A9 119713 objectId:900 +HGNC:11058 SLC7A10 solute carrier family 7 member 10 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 asc-1 solute carrier family 7 (neutral amino acid transporter light chain, asc system), member 10 Solute carriers 752 2000-06-02 2016-02-17 2016-02-17 56301 ENSG00000130876 OTTHUMG00000180344 uc002num.2 AB037670 NM_019849 CCDS12431 Q9NS82 "10734121|10863037" MGI:1858261 RGD:621672 SLC7A10 607959 SLC7A10 objectId:901 +HGNC:11059 SLC7A11 solute carrier family 7 member 11 protein-coding gene gene with protein product Approved 4q28.3 04q28.3 xCT solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 Solute carriers 752 2000-06-02 2016-02-17 2016-02-17 23657 ENSG00000151012 OTTHUMG00000133396 uc062zqn.1 AB026891 XM_011531802 CCDS3742 Q9UPY5 "10206947|12763038" MGI:1347355 RGD:1309275 SLC7A11 607933 SLC7A11 objectId:902 +HGNC:44064 SLC7A11-AS1 SLC7A11 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q28.3 04q28.3 SLC7A11 antisense RNA 1 (non-protein coding) 2012-05-30 2012-08-15 2012-10-12 641364 ENSG00000250033 OTTHUMG00000161284 uc003ihi.2 NR_038380 +HGNC:23092 SLC7A13 solute carrier family 7 member 13 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "AGT-1|XAT2" solute carrier family 7 (anionic amino acid transporter), member 13 Solute carriers 752 2003-09-25 2016-02-17 2016-02-17 157724 ENSG00000164893 OTTHUMG00000163663 uc003ydq.2 AJ417661 NM_138817 CCDS34917 Q8TCU3 "11907033|11943479" MGI:1921337 RGD:1311633 SLC7A13 SLC7A13 objectId:903 +HGNC:29326 SLC7A14 solute carrier family 7 member 14 protein-coding gene gene with protein product Approved 3q26.2 03q26.2 "KIAA1613|PPP1R142" protein phosphatase 1, regulatory subunit 142 solute carrier family 7, member 14 "Protein phosphatase 1 regulatory subunits|Solute carriers" "694|752" 2005-06-06 2015-12-08 2015-12-08 57709 ENSG00000013293 OTTHUMG00000158941 uc003fgz.3 BC022968 NM_020949 CCDS33892 Q8TBB6 MGI:3040688 RGD:1594375 SLC7A14 615720 SLC7A14 401123 objectId:895 +HGNC:32724 SLC7A15P solute carrier family 7 member 15, pseudogene pseudogene pseudogene Approved 2p24.1 02p24.1 solute carrier family 7, member 15, pseudogene Solute carriers 752 2010-03-12 2015-12-08 2015-12-08 100289450 ENSG00000232800 OTTHUMG00000154621 NG_012112 20210993 MGI:3045351 SLC7A15P +HGNC:11068 SLC8A1 solute carrier family 8 member A1 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 Na+/Ca++ exchanger NCX1 solute carrier family 8 (sodium/calcium exchanger), member 1 Solute carriers 752 1991-10-04 2016-02-25 2016-02-25 6546 ENSG00000183023 OTTHUMG00000102183 uc061inr.1 NM_021097 "CCDS1806|CCDS46264|CCDS46265|CCDS59430" P32418 1559714 MGI:107956 RGD:3717 SLC8A1 182305 SLC8A1 objectId:945 +HGNC:44102 SLC8A1-AS1 SLC8A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p22.1 02p22.1 SLC8A1 antisense RNA 1 (non-protein coding) 2012-06-22 2012-08-15 2012-10-12 100128590 ENSG00000227028 OTTHUMG00000152308 uc061inb.1 NR_038441 +HGNC:11069 SLC8A2 solute carrier family 8 member A2 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "NCX2|KIAA1087" solute carrier family 8 (sodium/calcium exchanger), member 2 Solute carriers 752 1994-12-09 2016-02-25 2016-02-25 6543 ENSG00000118160 OTTHUMG00000183529 uc002pgx.4 AB029010 XM_017027159 CCDS33065 Q9UPR5 8021246 MGI:107996 RGD:620194 SLC8A2 601901 SLC8A2 objectId:946 +HGNC:11070 SLC8A3 solute carrier family 8 member A3 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 NCX3 solute carrier family 8 (sodium/calcium exchanger), member 3 Solute carriers 752 1997-12-09 2016-02-25 2016-10-05 6547 ENSG00000100678 OTTHUMG00000152342 uc001xlz.3 AJ304852 XM_017021606 "CCDS9799|CCDS9800|CCDS35498|CCDS41967|CCDS45131|CCDS53904" P57103 8798769 MGI:107976 RGD:620197 SLC8A3 607991 SLC8A3 objectId:947 +HGNC:26175 SLC8B1 solute carrier family 8 member B1 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "FLJ22233|NCKX6|NCLX" SLC24A6 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 6|solute carrier family 24 (sodium/lithium/calcium exchanger), member 6|solute carrier family 8 (sodium/lithium/calcium exchanger), member B1" Solute carriers 752 2004-05-05 2013-07-19 2016-02-17 2016-02-17 80024 ENSG00000089060 OTTHUMG00000169566 AK025886 NM_024959 "CCDS31909|CCDS81744" Q6J4K2 "14625281|23506867" MGI:2180781 RGD:1565818 609841 SLC24A6 objectId:1050 +HGNC:11071 SLC9A1 solute carrier family 9 member A1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 PPP1R143 protein phosphatase 1, regulatory subunit 143 "APNH|NHE1" "solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive)|solute carrier family 9 (sodium/hydrogen exchanger), member 1|solute carrier family 9, subfamily A (NHE1, cation proton antiporter 1), member 1" "Protein phosphatase 1 regulatory subunits|Solute carriers" "694|752" 1986-01-01 2016-02-25 2016-10-05 6548 ENSG00000090020 OTTHUMG00000004271 uc001bnm.5 M81768 NM_003047 CCDS295 P19634 8283968 MGI:102462 RGD:3718 SLC9A1 107310 SLC9A1 457065 objectId:948 +HGNC:11072 SLC9A2 solute carrier family 9 member A2 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 NHE2 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 2|solute carrier family 9 (sodium/hydrogen exchanger), member 2|solute carrier family 9, subfamily A (NHE2, cation proton antiporter 2), member 2" Solute carriers 752 1992-06-12 2016-02-25 2016-10-05 6549 ENSG00000115616 OTTHUMG00000130778 uc002tca.4 NM_003048 CCDS2062 Q9UBY0 MGI:105075 RGD:3719 SLC9A2 600530 SLC9A2 objectId:949 +HGNC:11073 SLC9A3 solute carrier family 9 member A3 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 NHE3 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 3|solute carrier family 9 (sodium/hydrogen exchanger), member 3|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3" Solute carriers 752 1992-06-12 2016-02-25 2016-10-05 6550 ENSG00000066230 OTTHUMG00000090315 uc003jbe.3 NM_004174 "CCDS3855|CCDS64116" P48764 8096830 MGI:105064 RGD:3720 SLC9A3 182307 SLC9A3 456093 objectId:950 +HGNC:11074 SLC9A3P1 solute carrier family 9 member 3 pseudogene 1 pseudogene pseudogene Approved 10q11.23 10q11.23 "NHE3P|SLC9A3P|SLC9A3P4" "solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 pseudogene|solute carrier family 9 (sodium/hydrogen exchanger), member 3 pseudogene|solute carrier family 9 (sodium/hydrogen exchanger), member 3 pseudogene 1|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 4|solute carrier family 9 (sodium/hydrogen exchanger), member 3 pseudogene 4|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 1" 1996-03-13 2010-02-24 2016-02-17 2016-02-17 6551 ENSG00000233011 OTTHUMG00000018226 NG_006095 "8833252|8199403" SLC9A3P1 PGOHUM00000290157 +HGNC:19325 SLC9A3P2 solute carrier family 9 member 3 pseudogene 2 pseudogene pseudogene Approved 22q11.21 22q11.21 "solute carrier family 9 (sodium/hydrogen exchanger), member 3 pseudogene 2|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 2" 2002-10-03 2016-02-17 2016-02-17 128997 ENSG00000238125 OTTHUMG00000150753 NG_005203 SLC9A3P2 PGOHUM00000246416 +HGNC:33492 SLC9A3P3 solute carrier family 9 member 3 pseudogene 3 pseudogene pseudogene Approved 10q11.23 10q11.23 "solute carrier family 9 (sodium/hydrogen exchanger), member 3 pseudogene 3|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 pseudogene 3" 2007-06-18 2016-02-17 2016-02-17 728990 ENSG00000226631 OTTHUMG00000018219 XR_015422 SLC9A3P3 PGOHUM00000238486 +HGNC:11075 SLC9A3R1 SLC9A3 regulator 1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "NHERF|EBP50" "solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulatory factor 1|solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulator 1|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 1" PDZ domain containing 1220 1999-02-26 2016-02-18 2016-02-18 9368 ENSG00000109062 OTTHUMG00000178863 uc002jlo.5 AF015926 NM_004252 CCDS11705 O14745 "9314537|9430655" MGI:1349482 RGD:708538 SLC9A3R1 604990 244322 +HGNC:11076 SLC9A3R2 SLC9A3 regulator 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "SIP-1|TKA-1|NHERF-2|E3KARP" "solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulatory factor 2|solute carrier family 9 (sodium/hydrogen exchanger), isoform 3 regulator 2|solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2|solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2" PDZ domain containing 1220 1999-02-26 2016-02-18 2016-02-18 9351 ENSG00000065054 OTTHUMG00000176956 uc002coi.3 AF004900 XM_017023894 "CCDS45382|CCDS45383|CCDS58407" Q15599 "9054412|9671706" MGI:1890662 RGD:620380 SLC9A3R2 606553 +HGNC:11077 SLC9A4 solute carrier family 9 member A4 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 NHE4 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 4|solute carrier family 9 (sodium/hydrogen exchanger), member 4|solute carrier family 9, subfamily A (NHE4, cation proton antiporter 4), member 4" Solute carriers 752 1994-05-25 2016-02-25 2016-02-25 389015 ENSG00000180251 OTTHUMG00000153093 uc002tbz.4 NM_001011552.3 CCDS33264 Q6AI14 8199403 MGI:105074 RGD:3721 SLC9A4 600531 SLC9A4 objectId:951 +HGNC:11078 SLC9A5 solute carrier family 9 member A5 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 NHE5 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 5|solute carrier family 9 (sodium/hydrogen exchanger), member 5|solute carrier family 9, subfamily A (NHE5, cation proton antiporter 5), member 5" Solute carriers 752 1994-07-21 2016-02-25 2016-02-25 6553 ENSG00000135740 OTTHUMG00000172935 uc002esm.4 NM_001323973 CCDS42178 Q14940 "7759094|9933642" MGI:2685542 RGD:620473 SLC9A5 600477 SLC9A5 objectId:952 +HGNC:11079 SLC9A6 solute carrier family 9 member A6 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "NHE6|KIAA0267" "solute carrier family 9 (sodium/hydrogen exchanger), isoform 6|solute carrier family 9 (sodium/hydrogen exchanger), member 6|solute carrier family 9, subfamily A (NHE6, cation proton antiporter 6), member 6" Solute carriers 752 1999-07-30 2016-02-25 2016-02-25 10479 ENSG00000198689 OTTHUMG00000022498 uc004ezk.4 AF030409 NM_006359 "CCDS14654|CCDS44003|CCDS55504|CCDS83492" Q92581 9507001 MGI:2443511 RGD:1563582 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC9A6 SLC9A6 300231 SLC9A6 158415 objectId:953 +HGNC:17123 SLC9A7 solute carrier family 9 member A7 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 NHE7 "solute carrier family 9 (sodium/hydrogen exchanger), isoform 7|solute carrier family 9 (sodium/hydrogen exchanger), member 7|solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7" Solute carriers 752 2001-11-02 2016-02-25 2016-02-25 84679 ENSG00000065923 OTTHUMG00000021428 uc004dgu.3 AF298591 NM_032591 "CCDS14269|CCDS75967" Q96T83 11279194 MGI:2444530 RGD:1561385 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC9A7 SLC9A7 300368 SLC9A7 objectId:954 +HGNC:32679 SLC9A7P1 solute carrier family 9 member 7 pseudogene 1 pseudogene pseudogene Approved 12q23.1 12q23.1 "solute carrier family 9 (sodium/hydrogen exchanger), member 7 pseudogene 1|solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 pseudogene 1" 2011-07-15 2016-02-17 2016-02-17 121456 ENSG00000227825 OTTHUMG00000170629 NR_033801 SLC9A7P1 PGOHUM00000261838 +HGNC:20728 SLC9A8 solute carrier family 9 member A8 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "KIAA0939|NHE8" "solute carrier family 9 (sodium/hydrogen exchanger), isoform 8|solute carrier family 9 (sodium/hydrogen exchanger), member 8|solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8" Solute carriers 752 2003-03-28 2016-02-25 2016-02-25 23315 ENSG00000197818 OTTHUMG00000032710 uc002xuv.3 AB023156 XM_030524 "CCDS13421|CCDS58774" Q9Y2E8 12409279 MGI:1924281 RGD:1308193 SLC9A8 612730 SLC9A8 objectId:955 +HGNC:20653 SLC9A9 solute carrier family 9 member A9 protein-coding gene gene with protein product Approved 3q24 03q24 "FLJ35613|NHE9" "solute carrier family 9 (sodium/hydrogen exchanger), isoform 9|solute carrier family 9 (sodium/hydrogen exchanger), member 9|solute carrier family 9, subfamily A (NHE9, cation proton antiporter 9), member 9" Solute carriers 752 2003-03-28 2016-02-25 2016-02-25 285195 ENSG00000181804 OTTHUMG00000159373 uc003evn.3 AY254100 NM_173653 CCDS33872 Q8IVB4 14569117 MGI:2679732 RGD:1560736 SLC9A9 608396 SLC9A9 318779 objectId:956 +HGNC:40928 SLC9A9-AS1 SLC9A9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q24 03q24 SLC9A9 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100885796 ENSG00000240012 OTTHUMG00000159374 uc031sbu.1 NR_048544 +HGNC:40929 SLC9A9-AS2 SLC9A9 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q24 03q24 SLC9A9 antisense RNA 2 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 106480356 ENSG00000244493 OTTHUMG00000159375 uc062orj.1 +HGNC:24244 SLC9B1 solute carrier family 9 member B1 protein-coding gene gene with protein product Approved 4q24 04q24 NHA1 NHEDC1 "Na+/H+ exchanger domain containing 1|solute carrier family 9, subfamily B (cation proton antiporter 2), member 1|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1" Solute carriers 752 2007-05-15 2011-07-26 2016-02-17 2016-02-17 150159 ENSG00000164037 OTTHUMG00000161114 uc003hww.3 AF447585 NM_139173 "CCDS34041|CCDS47119" Q4ZJI4 16850186 MGI:1921696 RGD:1305087 611527 SLC9B1 objectId:2574 +HGNC:37492 SLC9B1P1 solute carrier family 9 member B1 pseudogene 1 pseudogene pseudogene Approved Yq11.21 Yq11.21 NHEDC1P1 "Na+/H+ exchanger domain containing 1 pseudogene 1|solute carrier family 9, subfamily B (cation proton antiporter 2), member 1 pseudogene 1|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 1" 2009-10-28 2011-07-26 2016-02-17 2016-02-17 100128190 ENSG00000183704 NG_023008 A6NJY1 SLC9B1P1 PGOHUM00000263345 +HGNC:37493 SLC9B1P2 solute carrier family 9 member B1 pseudogene 2 pseudogene pseudogene Approved 2p11.1 02p11.1 NHEDC1P2 "Na+/H+ exchanger domain containing 1 pseudogene 2|solute carrier family 9, subfamily B (cation proton antiporter 2), member 1 pseudogene 2|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 2" 2009-10-28 2011-07-26 2016-02-17 2016-02-17 389000 ENSG00000214329 OTTHUMG00000155082 NG_009550 SLC9B1P2 PGOHUM00000259742 +HGNC:43582 SLC9B1P3 solute carrier family 9 member B1 pseudogene 3 pseudogene pseudogene Approved 10p11.1 10p11.1 "solute carrier family 9, subfamily B (cation proton antiporter 2), member 1 pseudogene 3|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 3" 2011-11-15 2016-02-17 2016-02-17 100421008 ENSG00000233867 OTTHUMG00000018001 NG_025429 SLC9B1P3 PGOHUM00000238423 +HGNC:43583 SLC9B1P4 solute carrier family 9 member B1 pseudogene 4 pseudogene pseudogene Approved 22q11.1 22q11.1 "solute carrier family 9, subfamily B (cation proton antiporter 2), member 1 pseudogene 4|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 4" 2011-11-15 2016-02-17 2016-02-17 644768 ENSG00000227367 OTTHUMG00000140399 NG_022866 SLC9B1P4 PGOHUM00000246197 +HGNC:43584 SLC9B1P5 solute carrier family 9 member B1 pseudogene 5 pseudogene pseudogene Approved 16p11.2 16p11.2 "solute carrier family 9, subfamily B (cation proton antiporter 2), member 1 pseudogene 5|solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1 pseudogene 5" 2011-11-15 2016-02-17 2016-02-17 100533705 NG_028878 SLC9B1P5 PGOHUM00000249074 +HGNC:25143 SLC9B2 solute carrier family 9 member B2 protein-coding gene gene with protein product Approved 4q24 04q24 "FLJ23984|NHA2" NHEDC2 "Na+/H+ exchanger domain containing 2|solute carrier family 9, subfamily B (cation proton antiporter 2), member 2|solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2" Solute carriers 752 2007-05-15 2011-08-03 2016-02-17 2016-02-17 133308 ENSG00000164038 OTTHUMG00000131125 uc003hwx.5 AK172823 NM_178833 "CCDS3662|CCDS75173|CCDS75174" Q86UD5 18600791 MGI:2140077 RGD:1598112 SLC9B2 611789 SLC9B2 objectId:2575 +HGNC:31401 SLC9C1 solute carrier family 9 member C1 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 NHE sperm-NHE SLC9A10 "solute carrier family 9, isoform 10|solute carrier family 9, member 10|solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" Solute carriers 752 2004-12-23 2012-03-22 2016-02-17 2016-10-05 285335 ENSG00000172139 OTTHUMG00000159245 uc003dyu.4 AK128084 NM_183061 "CCDS33817|CCDS82818" Q4G0N8 12783626 MGI:2685456 RGD:1309075 612738 SLC9C1 objectId:957 +HGNC:28664 SLC9C2 solute carrier family 9 member C2 (putative) protein-coding gene gene with protein product Approved 1q25.1 01q25.1 MGC43026 SLC9A11 "solute carrier family 9, isoform 11|solute carrier family 9, member 11|solute carrier family 9, member C2" Solute carriers 752 2004-12-23 2012-03-22 2016-02-17 2016-02-17 284525 ENSG00000162753 OTTHUMG00000034800 uc001giz.3 AK128104 NM_178527 CCDS1308 Q5TAH2 RGD:1565820 SLC9C2 objectId:958 +HGNC:10905 SLC10A1 solute carrier family 10 member 1 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 NTCP Na+/taurocholate cotransporting polypeptide solute carrier family 10 (sodium/bile acid cotransporter), member 1 Solute carriers 752 1994-02-16 2016-02-17 2016-10-05 6554 ENSG00000100652 OTTHUMG00000171236 uc001xlr.3 L21893 NM_003049 CCDS9797 Q14973 8132774 MGI:97379 RGD:3681 SLC10A1 182396 SLC10A1 objectId:959 +HGNC:10906 SLC10A2 solute carrier family 10 member 2 protein-coding gene gene with protein product Approved 13q33.1 13q33.1 "ASBT|ISBT" solute carrier family 10 (sodium/bile acid cotransporter), member 2 Solute carriers 752 1995-10-24 2016-02-17 2016-10-05 6555 ENSG00000125255 OTTHUMG00000017313 uc001vpy.4 U10417 NM_000452 CCDS9506 Q12908 8661017 MGI:1201406 RGD:3682 SLC10A2 601295 SLC10A2 457478 objectId:960 +HGNC:22979 SLC10A3 solute carrier family 10 member 3 protein-coding gene gene with protein product Approved Xq28 Xq28 "P3|DXS253E" solute carrier family 10, member 3 Solute carriers 752 2003-08-08 2015-12-04 2015-12-04 8273 ENSG00000126903 OTTHUMG00000013369 uc004flp.4 X12458 NM_019848 "CCDS14755|CCDS48195" P09131 8733135 MGI:95048 RGD:1563513 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC10A3 SLC10A3 312090 SLC10A3 objectId:962 +HGNC:22980 SLC10A4 solute carrier family 10 member 4 protein-coding gene gene with protein product Approved 4p11 04p11 MGC29802 solute carrier family 10, member 4 Solute carriers 752 2003-08-08 2015-12-04 2016-10-05 201780 ENSG00000145248 OTTHUMG00000102092 uc003gyc.3 BC012048 NM_152679 CCDS3482 Q96EP9 MGI:3606480 RGD:1309536 SLC10A4 SLC10A4 objectId:963 +HGNC:22981 SLC10A5 solute carrier family 10 member 5 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 solute carrier family 10, member 5 Solute carriers 752 2003-08-08 2015-12-04 2015-12-04 347051 ENSG00000253598 OTTHUMG00000164683 uc011lfs.3 XM_294493 CCDS34915 Q5PT55 MGI:2685251 RGD:1306036 SLC10A5 SLC10A5 objectId:964 +HGNC:48930 SLC10A5P1 SLC10A5 pseudogene 1 pseudogene pseudogene Approved 8q21.13 08q21.13 2013-07-15 2013-07-15 100631269 ENSG00000205184 OTTHUMG00000164681 NG_029285 PGOHUM00000249408 +HGNC:30603 SLC10A6 solute carrier family 10 member 6 protein-coding gene gene with protein product Approved 4q21.3 04q21.3 SOAT solute carrier family 10 (sodium/bile acid cotransporter), member 6 Solute carriers 752 2005-06-14 2016-02-17 2016-10-05 345274 ENSG00000145283 OTTHUMG00000130596 uc003hqd.2 AJ583502 NM_197965 CCDS3614 Q3KNW5 "15020217|17491011" MGI:1923000 RGD:727800 SLC10A6 613366 SLC10A6 objectId:961 +HGNC:23088 SLC10A7 solute carrier family 10 member 7 protein-coding gene gene with protein product Approved 4q31.22 04q31.22 "MGC25043|DKFZp566M114|DKFZp313H0531|DKFZp779O2438" C4orf13 "chromosome 4 open reading frame 13|solute carrier family 10, member 7" Solute carriers 752 2003-09-25 2006-12-19 2015-12-04 2016-10-05 84068 ENSG00000120519 OTTHUMG00000161437 uc003ikr.3 AY346324 NM_032128 "CCDS3768|CCDS34073|CCDS75198|CCDS82962|CCDS82963|CCDS82964" Q0GE19 15932064 MGI:1924025 RGD:1564388 SLC10A7 611459 SLC10A7 objectId:965 +HGNC:10907 SLC11A1 solute carrier family 11 member 1 protein-coding gene gene with protein product Approved 2q35 02q35 natural resistance-associated macrophage protein 1 "LSH|NRAMP|NRAMP1" solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1 Solute carriers 752 1994-07-21 2016-02-17 2016-02-17 6556 ENSG00000018280 OTTHUMG00000086747 uc002vhv.3 D38171 NM_000578 CCDS2415 P49279 "7964458|7980580" MGI:1345275 RGD:1601463 SLC11A1 600266 SLC11A1 158401 objectId:966 +HGNC:10908 SLC11A2 solute carrier family 11 member 2 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "DCT1|DMT1" NRAMP2 solute carrier family 11 (proton-coupled divalent metal ion transporter), member 2 Solute carriers 752 1995-12-19 2016-02-17 2016-10-05 4891 ENSG00000110911 OTTHUMG00000169493 uc001rxi.4 AB015355 XM_005268911 "CCDS8805|CCDS53791|CCDS53792|CCDS53793" P49281 7613023 MGI:1345279 RGD:3684 SLC11A2 600523 SLC11A2 118732 objectId:967 +HGNC:10910 SLC12A1 solute carrier family 12 member 1 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 NKCC2 solute carrier family 12 (sodium/potassium/chloride transporter), member 1 Solute carriers 752 1994-02-16 2016-02-17 2016-02-17 6557 ENSG00000074803 OTTHUMG00000131495 uc001zwn.5 NM_000338 "CCDS10129|CCDS53940" Q13621 8640224 MGI:103150 RGD:3685 SLC12A1 600839 SLC12A1 118737 objectId:968 +HGNC:10911 SLC12A2 solute carrier family 12 member 2 protein-coding gene gene with protein product Approved 5q23.3 05q23.3 "NKCC1|BSC|BSC2|PPP1R141" "bumetanide-sensitive sodium-(potassium)-chloride cotransporter 1|basolateral Na-K-Cl symporter|protein phosphatase 1, regulatory subunit 141" solute carrier family 12 (sodium/potassium/chloride transporter), member 2 "Protein phosphatase 1 regulatory subunits|Solute carriers" "694|752" 1994-02-16 2016-02-17 2016-02-17 6558 ENSG00000064651 OTTHUMG00000128983 uc003kus.4 NM_001046 "CCDS4144|CCDS58965" P55011 7629105 MGI:101924 RGD:620809 SLC12A2 600840 SLC12A2 objectId:969 +HGNC:10912 SLC12A3 solute carrier family 12 member 3 protein-coding gene gene with protein product Approved 16q13 16q13 NCCT solute carrier family 12 (sodium/chloride transporter), member 3 Solute carriers 752 1995-10-02 2016-02-17 2016-02-17 6559 ENSG00000070915 OTTHUMG00000133284 uc002ekd.4 XM_005256119 "CCDS10770|CCDS45491|CCDS58464" P55017 8812482 MGI:108114 RGD:3686 SLC12A3 600968 SLC12A3 118740 objectId:970 +HGNC:10913 SLC12A4 solute carrier family 12 member 4 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 KCC1 solute carrier family 12 (potassium/chloride transporter), member 4 Solute carriers 752 1996-11-15 2016-02-17 2016-02-17 6560 ENSG00000124067 OTTHUMG00000137535 uc002euz.2 NM_005072 "CCDS10855|CCDS54030|CCDS54031|CCDS54032" Q9UP95 8663127 MGI:1309465 RGD:3687 SLC12A4 604119 SLC12A4 objectId:971 +HGNC:13818 SLC12A5 solute carrier family 12 member 5 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "KIAA1176|KCC2" solute carrier family 12 (potassium/chloride transporter), member 5 Solute carriers 752 2000-11-09 2016-02-17 2016-02-17 57468 ENSG00000124140 OTTHUMG00000032638 uc002xrb.3 AB033002 XM_017027981 "CCDS13391|CCDS46610" Q9H2X9 MGI:1862037 RGD:620811 SLC12A5 606726 SLC12A5 444948 objectId:972 +HGNC:10914 SLC12A6 solute carrier family 12 member 6 protein-coding gene gene with protein product Approved 15q14 15q14 "KCC3|ACCPN" "agenesis of corpus callosum and peripheral neuropathy (Andermann syndrome)|solute carrier family 12 (potassium/chloride transporter), member 6" Solute carriers 752 1999-05-25 2016-02-17 2016-10-12 9990 ENSG00000140199 OTTHUMG00000129441 uc001zhv.4 AF108831 NM_005135 "CCDS10036|CCDS42010|CCDS42011|CCDS42012|CCDS58352" Q9UHW9 "10187864|10347194" MGI:2135960 RGD:1311335 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_270|http://www.lrg-sequence.org/LRG/LRG_270" SLC12A6 604878 SLC12A6 118742 objectId:973 +HGNC:10915 SLC12A7 solute carrier family 12 member 7 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "KCC4|DKFZP434F076" solute carrier family 12 (potassium/chloride transporter), member 7 Solute carriers 752 1999-07-30 2016-02-17 2016-10-05 10723 ENSG00000113504 OTTHUMG00000161931 uc003jbu.4 AF105365 NM_006598 CCDS34129 Q9Y666 10347194 MGI:1342283 RGD:1359672 SLC12A7 604879 SLC12A7 objectId:974 +HGNC:15595 SLC12A8 solute carrier family 12 member 8 protein-coding gene gene with protein product Approved 3q21.2 03q21.2 CCC9 "solute carrier family 12 (sodium/potassium/chloride transporters), member 8|cation-chloride cotransporter 9" Solute carriers 752 2001-05-24 2016-02-17 2016-02-17 84561 ENSG00000221955 OTTHUMG00000159483 uc003ehv.5 NM_024628 CCDS43143 A0AV02 11863360 MGI:2443672 RGD:628730 SLC12A8 611316 SLC12A8 objectId:975 +HGNC:17435 SLC12A9 solute carrier family 12 member 9 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 CIP1 cation-chloride cotransporter-interacting protein Solute carriers 752 2003-07-25 2016-02-17 2016-10-05 56996 ENSG00000146828 OTTHUMG00000156045 uc003uwp.5 AF284422 NM_020246 "CCDS5707|CCDS59068|CCDS59069" Q9BXP2 "10871601|11239002" MGI:1933532 RGD:620747 SLC12A9 616861 SLC12A9 objectId:976 +HGNC:10916 SLC13A1 solute carrier family 13 member 1 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 "NaSi-1|NAS1" "solute carrier family 13 (sodium/sulphate symporters), member 1|solute carrier family 13 (sodium/sulfate symporter), member 1" Solute carriers 752 1994-02-16 2016-02-17 2016-02-17 6561 ENSG00000081800 OTTHUMG00000157087 uc003vkm.4 NM_022444 CCDS5786 Q9BZW2 11161786 MGI:1859937 RGD:61919 SLC13A1 606193 SLC13A1 objectId:977 +HGNC:10917 SLC13A2 solute carrier family 13 member 2 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 NaDC-1 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 Solute carriers 752 1999-01-26 2016-02-17 2016-10-05 9058 ENSG00000007216 OTTHUMG00000132523 uc002hbh.4 U26209 NM_003984 "CCDS11231|CCDS54098" Q13183 "8967342|10343111" MGI:1276558 RGD:61920 SLC13A2 604148 SLC13A2 objectId:978 +HGNC:14430 SLC13A3 solute carrier family 13 member 3 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "NADC3|SDCT2" solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3 Solute carriers 752 2001-06-13 2016-02-17 2016-02-17 64849 ENSG00000158296 OTTHUMG00000033042 uc002xsf.3 AF154121 NM_001011554 "CCDS13400|CCDS42886|CCDS54469|CCDS54470" Q8WWT9 "10794676|10992006" MGI:2149635 RGD:628786 SLC13A3 606411 SLC13A3 objectId:979 +HGNC:15827 SLC13A4 solute carrier family 13 member 4 protein-coding gene gene with protein product Approved 7q33 07q33 "SUT-1|SUT1" sulphate transporter 1 "solute carrier family 13 (sodium/sulphate symporters), member 4|solute carrier family 13 (sodium/sulfate symporter), member 4" Solute carriers 752 2001-06-13 2016-02-17 2016-02-17 26266 ENSG00000164707 OTTHUMG00000155539 uc003vta.4 AF169301 NM_012450 CCDS5840 Q9UKG4 10535998 MGI:2442367 RGD:1359715 SLC13A4 604309 SLC13A4 objectId:980 +HGNC:23089 SLC13A5 solute carrier family 13 member 5 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 NACT solute carrier family 13 (sodium-dependent citrate transporter), member 5 Solute carriers 752 2003-09-09 2016-02-17 2016-10-12 284111 ENSG00000141485 OTTHUMG00000102052 uc002gdj.5 AJ489980 NM_177550 "CCDS11079|CCDS45593|CCDS67136|CCDS67137" Q86YT5 12445824 MGI:3037150 RGD:631374 LRG_1020|http://www.lrg-sequence.org/LRG/LRG_1020 SLC13A5 608305 SLC13A5 413976 objectId:981 +HGNC:10918 SLC14A1 solute carrier family 14 member 1 (Kidd blood group) protein-coding gene gene with protein product Approved 18q12.3 18q12.3 "HsT1341|RACH1|RACH2" JK "Kidd blood group|solute carrier family 14 (urea transporter), member 1|solute carrier family 14 (urea transporter), member 1 (Kidd blood group)" "Blood group antigens|Solute carriers" "454|752" 1994-02-15 2016-02-17 2016-10-12 6563 ENSG00000141469 OTTHUMG00000132617 uc002lbf.4 BC040128 NM_015865 "CCDS11925|CCDS45860|CCDS77181|CCDS82252" Q13336 7797558 MGI:1351654 RGD:3688 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|LRG_802|http://www.lrg-sequence.org/LRG/LRG_802" SLC14A1 613868 SLC14A1 objectId:982 +HGNC:10919 SLC14A2 solute carrier family 14 member 2 protein-coding gene gene with protein product Approved 18q12.3 18q12.3 "HUT2|UT2" solute carrier family 14 (urea transporter), member 2 Solute carriers 752 1998-09-22 2016-02-17 2016-02-17 8170 ENSG00000132874 OTTHUMG00000132616 uc010dnj.4 X96969 XM_017026015 CCDS11924 Q15849 8647271 MGI:1351653 RGD:3689 SLC14A2 601611 SLC14A2 objectId:983 +HGNC:51125 SLC14A2-AS1 SLC14A2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18q12.3 18q12.3 2014-07-30 2014-07-30 101927980 ENSG00000267097 OTTHUMG00000179057 NR_110899 +HGNC:10920 SLC15A1 solute carrier family 15 member 1 protein-coding gene gene with protein product Approved 13q32.2-q32.3 13q32.2-q32.3 "PEPT1|HPECT1|HPEPT1" "peptide transporter HPEPT1|bA551M18.1.1 (solute carrier family 15 (oligopeptide transporter) member 1)|solute carrier family 15 oligopeptide transporter member 1" solute carrier family 15 (oligopeptide transporter), member 1 Solute carriers 752 1994-02-15 2016-02-17 2016-10-11 6564 ENSG00000088386 OTTHUMG00000017255 uc001vno.4 U13173 NM_005073 CCDS9489 P46059 7896779 MGI:1861376 RGD:621736 SLC15A1 600544 SLC15A1 objectId:984 +HGNC:10921 SLC15A2 solute carrier family 15 member 2 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 PEPT2 "solute carrier family 15 (H+/peptide transporter), member 2|solute carrier family 15 (oligopeptide transporter), member 2" Solute carriers 752 1996-11-15 2016-02-17 2016-10-05 6565 ENSG00000163406 OTTHUMG00000159423 uc003eep.3 BC044572 NM_021082 "CCDS3007|CCDS54631" Q16348 7756356 MGI:1890457 RGD:61972 SLC15A2 602339 SLC15A2 objectId:985 +HGNC:18068 SLC15A3 solute carrier family 15 member 3 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "PHT2|hPTR3" "solute carrier family 15, member 3|solute carrier family 15 (oligopeptide transporter), member 3" Solute carriers 752 2003-09-09 2016-02-17 2016-02-17 51296 ENSG00000110446 OTTHUMG00000167804 uc001nqn.3 AB020598 NM_016582 CCDS7998 Q8IY34 "11336635|11741232" MGI:1929691 RGD:628663 SLC15A3 610408 SLC15A3 objectId:986 +HGNC:23090 SLC15A4 solute carrier family 15 member 4 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "PHT1|PTR4" "solute carrier family 15, member 4|solute carrier family 15 (oligopeptide transporter), member 4" Solute carriers 752 2003-09-09 2016-02-17 2016-10-05 121260 ENSG00000139370 OTTHUMG00000168415 uc001uhu.3 AY038999 NM_145648 CCDS9264 Q8N697 11741232 MGI:2140796 RGD:708469 SLC15A4 615806 SLC15A4 objectId:987 +HGNC:33455 SLC15A5 solute carrier family 15 member 5 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 solute carrier family 15, member 5 Solute carriers 752 2008-12-10 2016-02-17 2016-02-17 729025 ENSG00000188991 OTTHUMG00000168793 uc021qvs.1 XM_001129090 A6NIM6 21044875 MGI:3607714 RGD:1564925 SLC15A5 SLC15A5 +HGNC:10922 SLC16A1 solute carrier family 16 member 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "MCT|MCT1" "solute carrier family 16 (monocarboxylic acid transporters), member 1|solute carrier family 16, member 1 (monocarboxylic acid transporter 1)|solute carrier family 16 (monocarboxylate transporter), member 1" Solute carriers 752 1994-02-16 2016-02-17 2016-10-05 6566 ENSG00000155380 OTTHUMG00000012129 uc001ecy.4 BC026317 NM_003051 CCDS858 P53985 "8124722|7835905" MGI:106013 RGD:3690 SLC16A1 600682 SLC16A1 168122 objectId:988 +HGNC:49445 SLC16A1-AS1 SLC16A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p13.2 01p13.2 2013-12-03 2013-12-03 100506392 ENSG00000226419 OTTHUMG00000012128 NR_103743 +HGNC:48931 SLC16A1P1 SLC16A1 pseudogene 1 pseudogene pseudogene Approved 7q35 07q35 2013-07-15 2013-07-15 100422547 ENSG00000242280 OTTHUMG00000157772 NG_026644 PGOHUM00000260386 +HGNC:10923 SLC16A2 solute carrier family 16 member 2 protein-coding gene gene with protein product Approved Xq13.2 Xq13.2 "XPCT|MCT8|MCT7" "DXS128|AHDS|MRX22" "solute carrier family 16 (monocarboxylic acid transporters), member 2 (putative transporter)|Allan-Herndon-Dudley syndrome|solute carrier family 16 (monocarboxylic acid transporters), member 2|mental retardation, X-linked 22|solute carrier family 16, member 2 (monocarboxylic acid transporter 8)|solute carrier family 16, member 2 (thyroid hormone transporter)" Solute carriers 752 1994-04-22 2016-02-17 2016-04-25 6567 ENSG00000147100 OTTHUMG00000021857 uc031tjy.2 NM_006517 CCDS14426 P36021 "7981683|12871948|15889350" MGI:1203732 RGD:628608 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC16A2 SLC16A2 300095 SLC16A2 118746 objectId:992 +HGNC:10924 SLC16A3 solute carrier family 16 member 3 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "MCT3|MCT4" "solute carrier family 16 (monocarboxylic acid transporters), member 3|solute carrier family 16, member 3 (monocarboxylic acid transporter 4)|solute carrier family 16 (monocarboxylate transporter), member 3" Solute carriers 752 1999-02-10 2016-02-17 2016-02-17 9123 ENSG00000141526 OTTHUMG00000178832 uc021ufm.2 U81800 NM_004207 CCDS11804 O15427 9425115 MGI:1933438 RGD:620603 SLC16A3 603877 SLC16A3 objectId:989 +HGNC:10925 SLC16A4 solute carrier family 16 member 4 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "MCT4|MCT5" "solute carrier family 16 (monocarboxylic acid transporters), member 4|solute carrier family 16, member 4 (monocarboxylic acid transporter 5)|solute carrier family 16, member 4" Solute carriers 752 1999-02-10 2015-12-04 2015-12-04 9122 ENSG00000168679 OTTHUMG00000011285 uc001dzo.3 U59185 NM_004696 "CCDS823|CCDS55621|CCDS55622|CCDS55623|CCDS55624" O15374 9425115 MGI:2385183 RGD:1359655 SLC16A4 603878 SLC16A4 objectId:994 +HGNC:10926 SLC16A5 solute carrier family 16 member 5 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "MCT5|MCT6" "solute carrier family 16 (monocarboxylic acid transporters), member 5|solute carrier family 16, member 5 (monocarboxylic acid transporter 6)|solute carrier family 16 (monocarboxylate transporter), member 5" Solute carriers 752 1999-02-10 2016-02-17 2016-02-17 9121 ENSG00000170190 OTTHUMG00000179277 uc002jmr.5 U59299 NM_004695 CCDS11713 O15375 9425115 MGI:2443515 RGD:1582896 SLC16A5 603879 SLC16A5 objectId:995 +HGNC:10927 SLC16A6 solute carrier family 16 member 6 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 "MCT6|MCT7" "solute carrier family 16 (monocarboxylic acid transporters), member 6|solute carrier family 16, member 6 (monocarboxylic acid transporter 7)|solute carrier family 16, member 6" Solute carriers 752 1999-02-10 2015-12-04 2015-12-04 9120 ENSG00000108932 OTTHUMG00000179812 uc002jha.3 U79745 NM_004694 CCDS11675 O15403 9425115 MGI:2144585 RGD:735117 SLC16A6 603880 SLC16A6 objectId:996 +HGNC:48932 SLC16A6P1 SLC16A6 pseudogene 1 pseudogene pseudogene Approved 17q24.1 17q24.1 2013-07-15 2013-07-15 440459 ENSG00000232457 OTTHUMG00000179314 NG_012727 PGOHUM00000262991 +HGNC:10928 SLC16A7 solute carrier family 16 member 7 protein-coding gene gene with protein product Approved 12q14.1 12q14.1 MCT2 "solute carrier family 16 (monocarboxylic acid transporters), member 7|solute carrier family 16 (monocarboxylate transporter), member 7" Solute carriers 752 1999-03-02 2016-02-17 2016-02-17 9194 ENSG00000118596 OTTHUMG00000169923 uc001sqt.5 AF049608 NM_004731 CCDS8961 O60669 9786900 MGI:1330284 RGD:3691 SLC16A7 603654 SLC16A7 objectId:990 +HGNC:16270 SLC16A8 solute carrier family 16 member 8 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "MCT3|REMP" monocarboxylate transporter 3 "solute carrier 16 (monocarboxylic acid transporters), member 8|solute carrier family 16 (monocarboxylate transporter), member 8" Solute carriers 752 2001-07-19 2016-02-17 2016-02-17 23539 ENSG00000100156 OTTHUMG00000151196 uc003auu.4 AF132610 NM_013356 CCDS13966 O95907 10493836 MGI:1929519 RGD:69282 SLC16A8 610409 SLC16A8 objectId:991 +HGNC:23520 SLC16A9 solute carrier family 16 member 9 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "FLJ43803|MCT9" monocarboxylic acid transporter 9 C10orf36 "chromosome 10 open reading frame 36|solute carrier family 16 (monocarboxylic acid transporters), member 9|solute carrier family 16, member 9 (monocarboxylic acid transporter 9)|solute carrier family 16, member 9" Solute carriers 752 2003-11-21 2004-01-21 2015-12-04 2016-10-05 220963 ENSG00000165449 OTTHUMG00000018283 uc057tkq.1 AK125791 NM_194298 CCDS7256 Q7RTY1 MGI:1914109 RGD:1596295 SLC16A9 614242 SLC16A9 objectId:997 +HGNC:17027 SLC16A10 solute carrier family 16 member 10 protein-coding gene gene with protein product Approved 6q21 06q21 "TAT1|MCT10" "solute carrier family 16 (monocarboxylic acid transporters), member 10|solute carrier family 16 (aromatic amino acid transporter), member 10" Solute carriers 752 2001-11-09 2016-02-17 2016-02-17 117247 ENSG00000112394 OTTHUMG00000015371 uc003pus.4 AF116652 XR_001743158 CCDS5089 Q8TF71 "11278508|11827462" MGI:1919722 RGD:69197 SLC16A10 607550 SLC16A10 objectId:993 +HGNC:23093 SLC16A11 solute carrier family 16 member 11 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "FLJ90193|MCT11" monocarboxylic acid transporter 11 "solute carrier family 16 (monocarboxylic acid transporters), member 11|solute carrier family 16, member 11" Solute carriers 752 2003-09-24 2015-12-04 2016-10-05 162515 ENSG00000174326 OTTHUMG00000102087 uc002gei.1 AK074674 NM_153357 CCDS11086 Q8NCK7 MGI:2663709 RGD:1311125 SLC16A11 615765 SLC16A11 objectId:998 +HGNC:23094 SLC16A12 solute carrier family 16 member 12 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 MCT12 monocarboxylic acid transporter 12 "solute carrier family 16 (monocarboxylic acid transporters), member 12|solute carrier family 16, member 12 (monocarboxylic acid transporter 12)|solute carrier family 16, member 12" Solute carriers 752 2003-09-24 2015-12-04 2016-10-05 387700 ENSG00000152779 OTTHUMG00000018714 uc001kgm.4 NM_213606 CCDS7404 Q6ZSM3 MGI:2147716 RGD:1311468 SLC16A12 611910 SLC16A12 140058 objectId:999 +HGNC:51205 SLC16A12-AS1 SLC16A12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q23.31 10q23.31 2014-08-07 2015-12-04 101926906 ENSG00000234452 OTTHUMG00000018715 NR_120614 +HGNC:31037 SLC16A13 solute carrier family 16 member 13 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 MCT13 monocarboxylic acid transporter 13 "solute carrier family 16 (monocarboxylic acid transporters), member 13|solute carrier family 16, member 13" Solute carriers 752 2004-03-11 2015-12-04 2015-12-04 201232 ENSG00000174327 OTTHUMG00000102089 uc002geh.3 BN000145 NM_201566 CCDS11085 Q7RTY0 MGI:1916559 RGD:1359138 SLC16A13 SLC16A13 objectId:1000 +HGNC:26417 SLC16A14 solute carrier family 16 member 14 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 "FLJ30794|MCT14" monocarboxylic acid transporter 14 "solute carrier family 16 (monocarboxylic acid transporters), member 14|solute carrier family 16, member 14" Solute carriers 752 2004-03-11 2015-12-04 2016-10-05 151473 ENSG00000163053 OTTHUMG00000133205 uc002vqd.2 BN000146 NM_152527 CCDS2473 Q7RTX9 MGI:1919031 RGD:1309675 SLC16A14 SLC16A14 objectId:1001 +HGNC:43809 SLC16A14P1 solute carrier family 16 member 14 pseudogene 1 pseudogene pseudogene Approved 8q23.1 08q23.1 "solute carrier family 16, member 14 (monocarboxylic acid transporter 14) pseudogene 1|solute carrier family 16, member 14 pseudogene 1" 2012-03-12 2015-12-04 2015-12-04 100128685 ENSG00000213708 OTTHUMG00000160423 NG_022428 SLC16A14P1 PGOHUM00000249771 +HGNC:10929 SLC17A1 solute carrier family 17 member 1 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 NAPI-1 NPT1 "solute carrier family 17 (sodium phosphate), member 1|solute carrier family 17 (organic anion transporter), member 1" Solute carriers 752 1994-05-25 2016-02-17 2016-02-17 6568 ENSG00000124568 OTTHUMG00000016297 uc003nfh.5 XM_017011199 CCDS4565 Q14916 8288239 MGI:103209 RGD:620099 SLC17A1 182308 SLC17A1 objectId:1002 +HGNC:10930 SLC17A2 solute carrier family 17 member 2 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 NPT3 "solute carrier family 17 (sodium phosphate), member 2|solute carrier family 17, member 2" Solute carriers 752 1999-07-19 2016-02-17 2016-02-17 10246 ENSG00000112337 OTTHUMG00000014413 uc003nfl.5 U90544 XM_006714949 "CCDS4567|CCDS69060" O00624 9149941 MGI:2443098 RGD:1308821 SLC17A2 611049 SLC17A2 objectId:1003 +HGNC:10931 SLC17A3 solute carrier family 17 member 3 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 NPT4 "solute carrier family 17 (sodium phosphate), member 3|solute carrier family 17 (organic anion transporter), member 3" Solute carriers 752 1999-07-19 2016-02-17 2016-02-17 10786 ENSG00000124564 OTTHUMG00000014412 uc063mfq.1 U90545 NM_006632 "CCDS4566|CCDS47385" O00476 9149941 MGI:2389216 RGD:628815 SLC17A3 611034 SLC17A3 objectId:1004 +HGNC:10932 SLC17A4 solute carrier family 17 member 4 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 KIAA2138 "solute carrier family 17 (sodium phosphate), member 4|solute carrier family 17, member 4" Solute carriers 752 1999-07-19 2016-02-17 2016-02-17 10050 ENSG00000146039 OTTHUMG00000014410 uc003nfe.4 AB020527 XM_011514213 "CCDS4564|CCDS75411" Q9Y2C5 10319585 MGI:2442850 RGD:1584758 SLC17A4 604216 SLC17A4 objectId:1005 +HGNC:10933 SLC17A5 solute carrier family 17 member 5 protein-coding gene gene with protein product Approved 6q13 06q13 "AST|SD|ISSD|NSD|SIALIN|SLD" SIASD "sialic acid storage disease|solute carrier family 17 (anion/sugar transporter), member 5|solute carrier family 17 (acidic sugar transporter), member 5" Solute carriers 752 2000-01-06 2016-02-17 2016-02-17 26503 ENSG00000119899 OTTHUMG00000015039 uc003phn.5 AJ387747 XM_005248710 CCDS4981 Q9NRA2 "10581036|8198127" MGI:1924105 RGD:1311388 SLC17A5 604322 SLC17A5 118753 objectId:1006 +HGNC:16703 SLC17A6 solute carrier family 17 member 6 protein-coding gene gene with protein product Approved 11p14.3 11p14.3 "DNPI|VGLUT2" "vesicular glutamate transporter 2|differentiation-associated Na-dependent inorganic phosphate cotransporter" "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6|solute carrier family 17 (vesicular glutamate transporter), member 6" Solute carriers 752 2001-09-27 2016-02-17 2016-02-17 57084 ENSG00000091664 OTTHUMG00000166063 uc001mqk.4 AB032435 NM_020346 CCDS7856 Q9P2U8 11306821 MGI:2156052 RGD:620531 SLC17A6 607563 SLC17A6 objectId:1008 +HGNC:16704 SLC17A7 solute carrier family 17 member 7 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "BNPI|VGLUT1" vesicular glutamate transporter 1 "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7|solute carrier family 17 (vesicular glutamate transporter), member 7" Solute carriers 752 2001-09-27 2016-02-17 2016-02-17 57030 ENSG00000104888 OTTHUMG00000183166 uc002pnp.4 AB032436 NM_020309 CCDS12764 Q9P2U7 "8632143|10820226" MGI:1920211 RGD:620101 SLC17A7 605208 SLC17A7 objectId:1007 +HGNC:20151 SLC17A8 solute carrier family 17 member 8 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 VGLUT3 vesicular glutamate transporter 3 DFNA25 "deafness, autosomal dominant 25|solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8|solute carrier family 17 (vesicular glutamate transporter), member 8" Solute carriers 752 2003-06-10 2016-02-17 2016-02-17 246213 ENSG00000179520 OTTHUMG00000170358 uc010svi.2 AJ459241 NM_139319 "CCDS9077|CCDS44957" Q8NDX2 12151341 MGI:3039629 RGD:628870 SLC17A8 607557 SLC17A8 169896 objectId:1009 +HGNC:16192 SLC17A9 solute carrier family 17 member 9 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FLJ23412|VNUT" C20orf59 "chromosome 20 open reading frame 59|solute carrier family 17, member 9|solute carrier family 17 (vesicular nucleotide transporter), member 9" Solute carriers 752 2001-07-17 2009-01-22 2016-02-17 2016-02-17 63910 ENSG00000101194 OTTHUMG00000032951 uc002yea.5 AK027065 NM_022082 "CCDS42901|CCDS77600" Q9BYT1 18375752 MGI:1919107 RGD:1311940 SLC17A9 612107 SLC17A9 413026 objectId:1010 +HGNC:10934 SLC18A1 solute carrier family 18 member A1 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 CGAT "VMAT1|VAT1" solute carrier family 18 (vesicular monoamine transporter), member 1 Solute carriers 752 1994-05-25 2016-02-25 2016-02-25 6570 ENSG00000036565 OTTHUMG00000097017 uc003wzm.3 NM_003053 "CCDS6013|CCDS47814|CCDS47815" P54219 MGI:106684 RGD:3693 SLC18A1 193002 SLC18A1 objectId:1011 +HGNC:10935 SLC18A2 solute carrier family 18 member A2 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "SVMT|SVAT" VMAT2 solute carrier family 18 (vesicular monoamine transporter), member 2 Solute carriers 752 1994-05-25 2016-02-25 2016-10-05 6571 ENSG00000165646 OTTHUMG00000019121 uc001ldd.3 L14269 NM_003054 CCDS7599 Q05940 MGI:106677 RGD:3694 SLC18A2 193001 SLC18A2 356164 objectId:1012 +HGNC:10936 SLC18A3 solute carrier family 18 member A3 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 VACHT solute carrier family 18 (vesicular acetylcholine transporter), member 3 Solute carriers 752 1995-06-01 2016-02-25 2016-10-05 6572 ENSG00000187714 OTTHUMG00000018196 uc001jhw.3 BC007765 NM_003055 CCDS7231 Q16572 8071310 MGI:1101061 RGD:62072 SLC18A3 600336 SLC18A3 objectId:1013 +HGNC:21573 SLC18B1 solute carrier family 18 member B1 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 dJ55C23.6 C6orf192 "chromosome 6 open reading frame 192|solute carrier family 18, subfamily B, member 1" Solute carriers 752 2003-11-26 2012-03-09 2016-02-17 2016-10-05 116843 ENSG00000146409 OTTHUMG00000015595 uc003qdw.2 AK124442 NM_052831 CCDS5163 Q6NT16 19697161 MGI:1923556 RGD:1306962 613361 SLC18B1 objectId:2556 +HGNC:10937 SLC19A1 solute carrier family 19 member 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 FOLT solute carrier family 19 (folate transporter), member 1 "Solute carriers|Minor histocompatibility antigens" "752|870" 1995-05-01 2016-02-17 2016-02-17 6573 ENSG00000173638 OTTHUMG00000090397 uc010gpy.1 U15939 XM_011529696 "CCDS13725|CCDS56217|CCDS56218" P41440 9570943 MGI:103182 RGD:3695 SLC19A1 600424 SLC19A1 311352 objectId:1014 +HGNC:10938 SLC19A2 solute carrier family 19 member 2 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 THTR1 TRMA solute carrier family 19 (thiamine transporter), member 2 Solute carriers 752 1999-04-09 2016-02-17 2016-10-05 10560 ENSG00000117479 OTTHUMG00000035452 uc001gge.5 AF135488 NM_006996 "CCDS1280|CCDS81398" O60779 "9399900|10391221" MGI:1928761 RGD:1308611 SLC19A2 603941 SLC19A2 118762 objectId:1015 +HGNC:16266 SLC19A3 solute carrier family 19 member 3 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 THTR2 thiamine transporter 2 "solute carrier family 19, member 3|solute carrier family 19 (thiamine transporter), member 3" Solute carriers 752 2001-07-19 2016-02-17 2016-10-05 80704 ENSG00000135917 OTTHUMG00000133185 uc002vpi.4 AF271633 XM_017005030 CCDS2468 Q9BZV2 "11136550|15871139" MGI:1931307 RGD:1311413 SLC19A3 606152 SLC19A3 118766 objectId:1016 +HGNC:10946 SLC20A1 solute carrier family 20 member 1 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "PiT-1|Glvr-1" gibbon ape leukemia virus receptor 1 GLVR1 solute carrier family 20 (phosphate transporter), member 1 Solute carriers 752 1989-10-18 2016-02-17 2016-10-05 6574 ENSG00000144136 OTTHUMG00000131317 uc002tib.4 NM_005415 CCDS2099 Q8WUM9 "8041748|16790504" MGI:108392 RGD:621079 SLC20A1 137570 SLC20A1 objectId:1017 +HGNC:20051 SLC20A1P1 solute carrier family 20 member 1 pseudogene 1 pseudogene pseudogene Approved 14q32.33 14q32.33 solute carrier family 20 (phosphate transporter), member 1 pseudogene 1 2003-01-13 2016-02-17 2016-02-17 192127 ENSG00000223506 OTTHUMG00000151877 NG_001019 SLC20A1P1 PGOHUM00000247980 +HGNC:42539 SLC20A1P2 solute carrier family 20 member 1 pseudogene 2 pseudogene pseudogene Approved 14q32.33 14q32.33 solute carrier family 20 (phosphate transporter), member 1 pseudogene 2 2011-08-05 2016-02-17 2016-02-17 192128 ENSG00000273894 OTTHUMG00000188306 NG_001019 SLC20A1P2 PGOHUM00000292482 +HGNC:42538 SLC20A1P3 solute carrier family 20 member 1 pseudogene 3 pseudogene pseudogene Approved 15q11.1 15q11.1 solute carrier family 20 (phosphate transporter), member 1 pseudogene 3 2011-08-05 2016-02-17 2016-02-17 646052 ENSG00000258706 OTTHUMG00000171653 NG_021113 SLC20A1P3 PGOHUM00000246612 +HGNC:10947 SLC20A2 solute carrier family 20 member 2 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "PiT-2|Glvr-2|Ram-1" "MLVAR|GLVR2" "solute carrier family 20 (phosphate transporter), member 2|murine leukemia virus, amphotropic; receptor" Solute carriers 752 1993-06-18 2016-02-17 2016-03-16 6575 ENSG00000168575 OTTHUMG00000164169 uc003xpe.5 XM_005273613 CCDS6132 Q08357 "7745689|8041748|16790504" MGI:97851 RGD:3699 SLC20A2 158378 SLC20A2 293028 objectId:1018 +HGNC:10950 SLC21A1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10957 SLC21A4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10958 SLC21A5 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10960 SLC21A7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10951 SLC21A10 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10954 SLC21A13 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:10963 SLC22A1 solute carrier family 22 member 1 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 OCT1 organic cation transporter 1 solute carrier family 22 (organic cation transporter), member 1 Solute carriers 752 1998-01-20 2016-02-17 2016-09-28 6580 ENSG00000175003 OTTHUMG00000015947 uc003qtc.4 U77086 XM_005267102 "CCDS5274|CCDS5275" O15245 9605850 MGI:108111 RGD:3224 SLC22A1 602607 SLC22A1 objectId:1019 +HGNC:10966 SLC22A2 solute carrier family 22 member 2 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 OCT2 organic cation transporter 2 solute carrier family 22 (organic cation transporter), member 2 Solute carriers 752 1998-01-20 2016-02-17 2016-09-28 6582 ENSG00000112499 OTTHUMG00000015950 uc003qtf.4 X98333 NM_003058 CCDS5276 O15244 9605850 MGI:1335072 RGD:61936 SLC22A2 602608 SLC22A2 objectId:1020 +HGNC:10967 SLC22A3 solute carrier family 22 member 3 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "OCT3|EMT" "organic cation transporter 3|extraneuronal monoamine transporter" "solute carrier family 22 (extraneuronal monoamine transporter), member 3|solute carrier family 22 (organic cation transporter), member 3" Solute carriers 752 1998-07-16 2016-02-17 2016-09-28 6581 ENSG00000146477 OTTHUMG00000015953 uc003qti.5 AF078749 NM_021977 CCDS5277 O75751 "9632645|9933568" MGI:1333817 RGD:3701 SLC22A3 604842 SLC22A3 objectId:1021 +HGNC:10968 SLC22A4 solute carrier family 22 member 4 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "OCTN1|MGC34546" "solute carrier family 22 (organic cation/ergothioneine transporter), member 4|solute carrier family 22 (organic cation/zwitterion transporter), member 4" Solute carriers 752 1998-07-16 2016-02-17 2016-10-05 6583 ENSG00000197208 OTTHUMG00000059648 uc003kwq.4 AB007448 NM_003059 CCDS4153 Q9H015 "9426230|15795384" MGI:1353479 RGD:621149 SLC22A4 604190 SLC22A4 objectId:1022 +HGNC:10969 SLC22A5 solute carrier family 22 member 5 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "OCTN2|SCD" CDSP solute carrier family 22 (organic cation/carnitine transporter), member 5 Solute carriers 752 1998-07-16 2016-02-17 2016-10-05 6584 ENSG00000197375 OTTHUMG00000059634 uc003kww.5 AF057164 NM_003060 "CCDS4154|CCDS78058" O76082 "9618255|9916797|9685390" MGI:1329012 RGD:3702 SLC22A5 603377 SLC22A5 118781 objectId:1023 +HGNC:10970 SLC22A6 solute carrier family 22 member 6 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "ROAT1|PAHT|OAT1" solute carrier family 22 (organic anion transporter), member 6 Solute carriers 752 1999-07-30 2016-02-17 2016-02-17 9356 ENSG00000197901 OTTHUMG00000167767 uc001nwj.4 AF057039 NM_004790 "CCDS8041|CCDS31591|CCDS44631|CCDS44632" Q4U2R8 "9762842|9950961" MGI:892001 RGD:69338 SLC22A6 607582 SLC22A6 objectId:1025 +HGNC:10971 SLC22A7 solute carrier family 22 member 7 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "NLT|OAT2" solute carrier family 22 (organic anion transporter), member 7 Solute carriers 752 1999-07-30 2016-02-17 2016-02-17 10864 ENSG00000137204 OTTHUMG00000014726 uc063oqz.1 AF097518 XM_011514256 "CCDS4892|CCDS4893" Q9Y694 "9650585|10773670" MGI:1859559 RGD:621699 SLC22A7 604995 SLC22A7 objectId:1026 +HGNC:10972 SLC22A8 solute carrier family 22 member 8 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 OAT3 solute carrier family 22 (organic anion transporter), member 8 Solute carriers 752 1999-07-30 2016-02-17 2016-02-17 9376 ENSG00000149452 OTTHUMG00000167768 uc001nwo.4 "AF097491|BC022387" NM_004254 "CCDS8042|CCDS53643|CCDS53644" Q8TCC7 10049739 MGI:1336187 RGD:632286 SLC22A8 607581 SLC22A8 objectId:1027 +HGNC:16261 SLC22A9 solute carrier family 22 member 9 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "OAT4|FLJ23666|UST3|OAT7" solute carrier family 22 (organic anion transporter), member 9 Solute carriers 752 2002-01-31 2016-02-17 2016-02-17 114571 ENSG00000149742 OTTHUMG00000167805 uc001nww.4 AP001880 NM_080866 CCDS8043 Q8IVM8 "11327718|17393504" "MGI:2442751|MGI:2385316|MGI:3042283|MGI:3645714|MGI:3605624|MGI:2442750" SLC22A9 607579 SLC22A9 objectId:1028 +HGNC:18057 SLC22A10 solute carrier family 22 member 10 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "OAT5|hOAT5" "solute carrier family 22 (organic anion/cation transporter), member 10|solute carrier family 22, member 10" Solute carriers 752 2002-01-30 2015-12-08 2015-12-08 387775 ENSG00000184999 OTTHUMG00000165197 uc009yor.4 AP003420 NM_001039752 CCDS41661 Q63ZE4 11327718 SLC22A10 607580 SLC22A10 objectId:1029 +HGNC:18120 SLC22A11 solute carrier family 22 member 11 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 OAT4 solute carrier family 22 (organic anion/urate transporter), member 11 Solute carriers 752 2002-01-31 2016-02-17 2016-10-05 55867 ENSG00000168065 OTTHUMG00000045142 uc001oai.4 AB026116 NM_018484 "CCDS8074|CCDS76425" Q9NSA0 "10660625|15576633|17229912" SLC22A11 607097 SLC22A11 objectId:1030 +HGNC:17989 SLC22A12 solute carrier family 22 member 12 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "OAT4L|RST|URAT1" "solute carrier family 22 (organic anion/cation transporter), member 12|solute carrier family 22 (organic anion/urate transporter), member 12" Solute carriers 752 2002-07-31 2016-02-18 2016-02-18 116085 ENSG00000197891 OTTHUMG00000045213 uc001oam.3 AB071863 NM_144585 "CCDS8075|CCDS60835|CCDS60836" Q96S37 12024214 MGI:1195269 RGD:621628 SLC22A12 607096 SLC22A12 166795 objectId:1031 +HGNC:8494 SLC22A13 solute carrier family 22 member 13 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "OCTL1|OCTL3|OAT10" ORCTL3 "organic cationic transporter-like 3|solute carrier family 22 (organic anion transporter), member 13|solute carrier family 22 (organic anion/urate transporter), member 13" Solute carriers 752 1999-03-31 2003-10-15 2016-02-18 2016-02-18 9390 ENSG00000172940 OTTHUMG00000131086 uc003chz.4 AB010438 NM_004256 CCDS2676 Q9Y226 "10072596|18411268" MGI:2143107 RGD:1583222 SLC22A13 604047 SLC22A13 objectId:1032 +HGNC:8495 SLC22A14 solute carrier family 22 member 14 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 OCTL2 ORCTL4 "organic cationic transporter-like 4|solute carrier family 22 (organic cation transporter), member 14|solute carrier family 22, member 14" Solute carriers 752 1999-03-31 2003-10-15 2015-12-08 2016-10-05 9389 ENSG00000144671 OTTHUMG00000131082 uc010hhc.2 AB011082 NM_004803 CCDS2677 Q9Y267 10072596 MGI:2685974 RGD:1306470 SLC22A14 604048 SLC22A14 objectId:1033 +HGNC:20301 SLC22A15 solute carrier family 22 member 15 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 FLIPT1 "solute carrier family 22 (organic cation transporter), member 15|solute carrier family 22, member 15" Solute carriers 752 2003-10-08 2015-12-08 2016-10-05 55356 ENSG00000163393 OTTHUMG00000012008 uc001egb.4 AY145501 NM_018420 CCDS44198 Q8IZD6 12372408 MGI:3607704 RGD:1311184 SLC22A15 608275 SLC22A15 objectId:1034 +HGNC:20302 SLC22A16 solute carrier family 22 member 16 protein-coding gene gene with protein product Approved 6q21 06q21 "FLIPT2|CT2|OKB1|OAT6" "solute carrier family 22 (organic cation transporter), member 16|solute carrier family 22 (organic cation/carnitine transporter), member 16" Solute carriers 752 2003-10-08 2016-02-18 2016-02-18 85413 ENSG00000004809 OTTHUMG00000016171 uc003puf.5 NM_033125 CCDS5084 Q86VW1 "12372408|12089149|17473959" MGI:1918090 RGD:1592810 SLC22A16 608276 SLC22A16 objectId:1024 +HGNC:23095 SLC22A17 solute carrier family 22 member 17 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "BOCT|BOIT|NGALR" neutrophil gelatinase-associated lipocalin receptor solute carrier family 22, member 17 Solute carriers 752 2003-09-24 2015-12-08 2015-12-08 51310 ENSG00000092096 OTTHUMG00000028740 uc058zqw.1 AJ243653 NM_020372 "CCDS9593|CCDS9594" Q8WUG5 16377569 MGI:1926225 RGD:631405 SLC22A17 611461 SLC22A17 objectId:1035 +HGNC:10964 SLC22A18 solute carrier family 22 member 18 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "BWR1A|TSSC5|ITM" "ORCTL2|BWSCR1A|IMPT1|SLC22A1L" "solute carrier family 22 (organic cation transporter), member 1-like|solute carrier family 22, member 18" Solute carriers 752 1998-06-05 2004-01-21 2015-12-08 2016-10-12 5002 ENSG00000110628 OTTHUMG00000010037 uc001lwx.3 AF028738 NM_183233 "CCDS7740|CCDS81542" Q96BI1 "9499412|9520460" MGI:1336884 RGD:1303323 LRG_1054|http://www.lrg-sequence.org/LRG/LRG_1054 SLC22A18 602631 SLC22A18 437689 objectId:1036 +HGNC:10965 SLC22A18AS solute carrier family 22 member 18 antisense protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "BWR1B|p27-BWR1B" "BWSCR1B|ORCTL2S|SLC22A1LS" "solute carrier family 22 (organic cation transporter), member 1-like antisense|solute carrier family 22 (organic cation transporter), member 18 antisense" 1998-05-27 2005-08-23 2016-02-18 2016-10-05 5003 ENSG00000254827 OTTHUMG00000010038 uc057xyv.2 AF035407 NM_007105 CCDS81541 Q8N1D0 "9570947|9520460|15175115" SLC22A18AS 603240 +HGNC:29867 SLC22A20 solute carrier family 22 member 20 other unknown Approved 11q13.1 11q13.1 "Oat6|FLJ16331" solute carrier family 22, member 20 Solute carriers 752 2007-01-19 2015-12-08 2015-12-08 440044 ENSG00000197847 OTTHUMG00000165615 DQ053017 NM_001004326 A6NK97 "15369770|16478971" MGI:2685809 RGD:1311460 SLC22A20 611696 SLC22A20 PGOHUM00000257893 objectId:1037 +HGNC:21106 SLC22A23 solute carrier family 22 member 23 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 FLJ22174 C6orf85 "chromosome 6 open reading frame 85|solute carrier family 22, member 23" Solute carriers 752 2003-05-20 2008-01-11 2015-12-08 2015-12-08 63027 ENSG00000137266 OTTHUMG00000014144 uc003mvm.5 AJ420525 NM_021945 "CCDS34331|CCDS47363|CCDS75389" A1A5C7 17714910 MGI:1920352 RGD:620302 SLC22A23 611697 SLC22A23 objectId:1038 +HGNC:28542 SLC22A24 solute carrier family 22 member 24 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "MGC34821|NET46" solute carrier family 22, member 24 Solute carriers 752 2008-01-11 2015-12-08 2015-12-08 283238 ENSG00000197658 OTTHUMG00000165372 uc021qkp.1 NM_173586 "CCDS73308|CCDS76422" Q8N4F4 17714910 "MGI:2385316|MGI:2442750|MGI:2442751|MGI:3042283|MGI:3605624|MGI:3645714" SLC22A24 611698 SLC22A24 objectId:1039 +HGNC:32935 SLC22A25 solute carrier family 22 member 25 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "UST6|HIMTP|MGC120420" "MGI:2442751, MGI:2385316, MGI:3042283, MGI:3645714, MGI:3605624, MGI:2442750|solute carrier family 22, member 25" Solute carriers 752 2008-01-11 2015-12-08 2015-12-08 387601 ENSG00000196600 OTTHUMG00000165340 uc001nwr.2 AY437532 NM_199352 CCDS31592 Q6T423 17714910 "MGI:2442751|MGI:2385316|MGI:3042283|MGI:3645714|MGI:3605624|MGI:2442750" RGD:621104 SLC22A25 610792 SLC22A25 objectId:1040 +HGNC:27091 SLC22A31 solute carrier family 22 member 31 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 solute carrier family 22, member 31 Solute carriers 752 2011-07-12 2015-12-08 2015-12-08 146429 ENSG00000259803 OTTHUMG00000175615 uc021tmr.1 NM_001242757 CCDS73927 A6NKX4 SLC22A31 objectId:2557 +HGNC:10974 SLC23A1 solute carrier family 23 member 1 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "YSPL3|SVCT1" SLC23A2 "solute carrier family 23 (nucleobase transporters), member 2|solute carrier family 23 (ascorbic acid transporter), member 1" Solute carriers 752 1998-10-23 2003-03-21 2016-02-17 2016-02-17 9963 ENSG00000170482 OTTHUMG00000129228 uc003leg.4 AF058317 NM_152685 "CCDS4212|CCDS4213" Q9UHI7 "9804989|10331392" MGI:1341903 RGD:619875 SLC23A1 603790 SLC23A1 objectId:1041 +HGNC:10973 SLC23A2 solute carrier family 23 member 2 protein-coding gene gene with protein product Approved 20p13 20p13 "SVCT2|KIAA0238|YSPL2" SLC23A1 "solute carrier family 23 (nucleobase transporters), member 1|solute carrier family 23 (ascorbic acid transporter), member 2" Solute carriers 752 1999-08-13 2003-03-21 2016-02-17 2016-02-17 9962 ENSG00000089057 OTTHUMG00000031793 uc002wlh.1 AF058319 XM_017028171 CCDS13085 Q9UGH3 "9804989|10331392" MGI:1859682 RGD:619876 SLC23A2 603791 SLC23A2 objectId:1042 +HGNC:20601 SLC23A3 solute carrier family 23 member 3 protein-coding gene gene with protein product Approved 2q35 02q35 "SVCT3|FLJ31168|Yspl1" solute carrier family 23, member 3 Solute carriers 752 2003-03-17 2015-12-08 2015-12-08 151295 ENSG00000213901 OTTHUMG00000154616 uc010zkr.3 BC030243 NM_144712 "CCDS42819|CCDS46517|CCDS46518" Q6PIS1 MGI:104516 RGD:1307402 SLC23A3 SLC23A3 objectId:1043 +HGNC:20602 SLC23A4P solute carrier family 23 member 4, pseudogene pseudogene pseudogene Approved 7q33 07q33 SLC23A4 "solute carrier family 23 (nucleobase transporters), member 4|solute carrier family 23 (nucleobase transporters), member 4, pseudogene" Solute carriers 752 2003-03-24 2011-07-15 2016-02-17 2016-02-17 641842 NG_006548 20042597 MGI:1917272 SLC23A4P PGOHUM00000263173 objectId:1044 +HGNC:10975 SLC24A1 solute carrier family 24 member 1 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "NCKX1|NCKX|RODX|KIAA0702|HsT17412|CSNB1D" solute carrier family 24 (sodium/potassium/calcium exchanger), member 1 Solute carriers 752 1999-02-18 2016-02-17 2016-02-17 9187 ENSG00000074621 OTTHUMG00000167960 uc010ujf.2 AF062922 NM_004727 "CCDS45284|CCDS73742|CCDS73743|CCDS73744" O60721 9856482 MGI:2384871 RGD:620080 SLC24A1 603617 SLC24A1 244378 objectId:1045 +HGNC:10976 SLC24A2 solute carrier family 24 member 2 protein-coding gene gene with protein product Approved 9p22.1 09p22.1 NCKX2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 Solute carriers 752 1999-02-18 2016-02-17 2016-02-17 25769 ENSG00000155886 OTTHUMG00000019646 uc003zoa.3 AF097366 NM_020344 "CCDS6493|CCDS55297" Q9UI40 10662833 MGI:1923626 RGD:628650 SLC24A2 609838 SLC24A2 objectId:1046 +HGNC:10977 SLC24A3 solute carrier family 24 member 3 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 Solute carriers 752 2000-07-31 2016-02-17 2016-10-05 57419 ENSG00000185052 OTTHUMG00000031993 uc002wrl.4 AF169257 NM_020689 CCDS13140 Q9HC58 MGI:2137513 RGD:69256 SLC24A3 609839 SLC24A3 objectId:1047 +HGNC:10978 SLC24A4 solute carrier family 24 member 4 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 NCKX4 solute carrier family 24 (sodium/potassium/calcium exchanger), member 4 Solute carriers 752 2000-09-01 2016-02-17 2016-04-25 123041 ENSG00000140090 OTTHUMG00000167589 uc001yak.4 AF520704 NM_153646 "CCDS45155|CCDS45156|CCDS9903" Q8NFF2 MGI:2447362 RGD:1305926 SLC24A4 609840 SLC24A4 328699 objectId:1048 +HGNC:20611 SLC24A5 solute carrier family 24 member 5 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "JSX|OCA6" oculocutaneous albinism 6 (autosomal recessive) "solute carrier family 24, member 5|solute carrier family 24 (sodium/potassium/calcium exchanger), member 5" Solute carriers 752 2003-03-12 2016-02-17 2016-02-17 283652 ENSG00000188467 OTTHUMG00000131494 uc001zwe.4 AF348468 NM_205850 CCDS10128 Q71RS6 23364476 MGI:2677271 RGD:1310565 SLC24A5 609802 SLC24A5 371844 objectId:1049 +HGNC:10979 SLC25A1 solute carrier family 25 member 1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 CTP SLC20A3 "solute carrier family 20 (mitochondrial citrate transporter), member 3|solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1" Solute carriers 752 1996-08-01 2016-02-18 2016-10-05 6576 ENSG00000100075 OTTHUMG00000150123 uc002zoz.6 U25147 NM_005984 "CCDS13758|CCDS74817" P53007 "8666394|9254007" MGI:1345283 RGD:3703 SLC25A1 190315 SLC25A1 358443 objectId:1051 +HGNC:43845 SLC25A1P1 solute carrier family 25 member 1 pseudogene 1 pseudogene pseudogene Approved 11q14.2 11q14.2 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 1 2012-03-29 2016-02-18 2016-02-18 100131457 ENSG00000254479 OTTHUMG00000166980 NG_021826 SLC25A1P1 PGOHUM00000242831 +HGNC:43847 SLC25A1P2 solute carrier family 25 member 1 pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 2 2012-03-29 2016-02-18 2016-02-18 100133079 ENSG00000234467 OTTHUMG00000156383 NG_009439 SLC25A1P2 PGOHUM00000233319 +HGNC:43846 SLC25A1P3 solute carrier family 25 member 1 pseudogene 3 pseudogene pseudogene Approved 7q11.21 07q11.21 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 3 2012-03-29 2016-02-18 2016-02-18 644159 ENSG00000213645 OTTHUMG00000156555 NG_009405 SLC25A1P3 PGOHUM00000233347 +HGNC:43848 SLC25A1P4 solute carrier family 25 member 1 pseudogene 4 pseudogene pseudogene Approved 16p11.2 16p11.2 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 4 2012-03-29 2016-02-18 2016-02-18 100132355 ENSG00000261608 OTTHUMG00000176236 NG_022513 SLC25A1P4 PGOHUM00000249101 +HGNC:43849 SLC25A1P5 solute carrier family 25 member 1 pseudogene 5 pseudogene pseudogene Approved 19q11 19q11 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1 pseudogene 5 2012-03-29 2016-02-18 2016-07-25 642290 ENSG00000267323 OTTHUMG00000180740 NG_021745 SLC25A1P5 PGOHUM00000294967 +HGNC:22921 SLC25A2 solute carrier family 25 member 2 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 ORNT2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 2 Solute carriers 752 2003-07-23 2016-02-18 2016-02-18 83884 ENSG00000120329 OTTHUMG00000129604 uc003ljf.3 AF332005 NM_031947 CCDS4258 Q9BXI2 11004451 MGI:2137907 RGD:1310667 SLC25A2 608157 SLC25A2 objectId:1059 +HGNC:10989 SLC25A3 solute carrier family 25 member 3 protein-coding gene gene with protein product Approved 12q23.1 12q23.1 PHC solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 Solute carriers 752 1993-05-14 2016-02-18 2016-02-18 5250 ENSG00000075415 OTTHUMG00000170212 uc001tfo.4 NM_005888 "CCDS9065|CCDS9066" Q00325 8168843 MGI:1353498 RGD:70986 SLC25A3 600370 SLC25A3 158407 objectId:1061 +HGNC:26869 SLC25A3P1 solute carrier family 25 member 3 pseudogene 1 pseudogene pseudogene Approved 1p32.3 01p32.3 FLJ40434 "solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 pseudogene 1|solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 1" 2012-03-02 2016-02-18 2016-02-18 163742 ENSG00000236253 OTTHUMG00000008078 NM_178501 SLC25A3P1 PGOHUM00000244036 +HGNC:43784 SLC25A3P2 solute carrier family 25 member 3 pseudogene 2 pseudogene pseudogene Approved 12q24.13 12q24.13 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 2 2012-03-02 2016-02-18 2016-02-18 100128618 ENSG00000258373 OTTHUMG00000169607 NG_021734 SLC25A3P2 PGOHUM00000239928 +HGNC:43785 SLC25A3P3 solute carrier family 25 member 3 pseudogene 3 pseudogene pseudogene Approved 18p11.32 18p11.32 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3 pseudogene 2012-03-02 2016-02-18 2016-02-18 100422606 NG_026266 SLC25A3P3 PGOHUM00000261247 +HGNC:10990 SLC25A4 solute carrier family 25 member 4 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 T1 "PEO3|PEO2|ANT1" solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 Solute carriers 752 1989-05-19 2016-02-18 2016-10-12 291 ENSG00000151729 OTTHUMG00000134299 uc003ixd.4 BC008664 NM_001151 CCDS34114 P12235 1582253 MGI:1353495 RGD:620352 LRG_441|http://www.lrg-sequence.org/LRG/LRG_441 SLC25A4 103220 SLC25A4 118807 objectId:1062 +HGNC:10991 SLC25A5 solute carrier family 25 member 5 protein-coding gene gene with protein product Approved Xq24 Xq24 "T2|2F1|T3" ANT2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 Solute carriers 752 1990-08-03 2016-02-18 2016-02-18 292 ENSG00000005022 OTTHUMG00000022715 uc004erh.5 BC068199 NM_001152 CCDS14578 P05141 "2168878|2829183" MGI:1353496 RGD:620353 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC25A5 SLC25A5 300150 SLC25A5 objectId:1063 +HGNC:43438 SLC25A5-AS1 SLC25A5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq24 Xq24 SLC25A5 antisense RNA 1 (non-protein coding) 2011-10-28 2012-08-15 2012-10-12 100303728 ENSG00000224281 OTTHUMG00000022273 uc004erg.2 NR_028443 +HGNC:19250 SLC25A5P1 solute carrier family 25 member 5 pseudogene 1 pseudogene pseudogene Approved 22q13.2 22q13.2 bK250D10.4 ANTP3 "adenine nucleotide translocator pseudogene 3 (clone 13)|solute carrier family 25, member 5 pseudogene 1|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 1" 2002-09-18 2016-02-18 2016-02-18 266623 ENSG00000215347 OTTHUMG00000151288 NG_009276 SLC25A5P1 PGOHUM00000246341 +HGNC:35470 SLC25A5P2 solute carrier family 25 member 5 pseudogene 2 pseudogene pseudogene Approved 2p22.3 02p22.3 LOC344371 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 2 2009-02-25 2016-02-18 2016-02-18 344371 ENSG00000235064 OTTHUMG00000152137 NG_009264 SLC25A5P2 PGOHUM00000240010 +HGNC:507 SLC25A5P3 solute carrier family 25 member 5 pseudogene 3 pseudogene pseudogene Approved 7p11.2 07p11.2 ANTP1 "adenine nucleotide translocator pseudogene 1 (clone 29)|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 3" 1991-11-21 2009-02-25 2016-02-18 2016-02-18 222005 ENSG00000213673 OTTHUMG00000156066 NG_009279 2157297 SLC25A5P3 PGOHUM00000233235 +HGNC:35471 SLC25A5P4 solute carrier family 25 member 5 pseudogene 4 pseudogene pseudogene Approved 13q21.1 13q21.1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 4 2009-02-25 2016-02-18 2016-02-18 100131027 ENSG00000234421 OTTHUMG00000016989 NG_009271 SLC25A5P4 PGOHUM00000256731 +HGNC:511 SLC25A5P5 solute carrier family 25 member 5 pseudogene 5 pseudogene pseudogene Approved 7p14.3 07p14.3 TCAG_29001 ANTP5 "adenine nucleotide translocator pseudogene 5 (clone 19)|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 5" 1991-11-21 2009-02-25 2016-02-18 2016-02-18 442525 ENSG00000226421 OTTHUMG00000152896 NG_009277 2157297 SLC25A5P5 PGOHUM00000233169 +HGNC:512 SLC25A5P6 solute carrier family 25 member 5 pseudogene 6 pseudogene pseudogene Approved 4q35.2 04q35.2 ANTP6 "adenine nucleotide translocator pseudogene 6 (clone 3)|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 6" 1991-11-21 2009-02-25 2016-02-18 2016-02-18 644042 ENSG00000213332 OTTHUMG00000160314 NG_007588 2157297 SLC25A5P6 PGOHUM00000245790 +HGNC:513 SLC25A5P7 solute carrier family 25 member 5 pseudogene 7 pseudogene pseudogene Approved 6q22.31 06q22.31 ANTP7 "adenine nucleotide translocator pseudogene 7 (clone 2)|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 7" 1991-11-21 2009-02-25 2016-02-18 2016-02-18 442255 ENSG00000218180 OTTHUMG00000015482 NG_009280 2157297 SLC25A5P7 PGOHUM00000243762 +HGNC:35469 SLC25A5P8 solute carrier family 25 member 5 pseudogene 8 pseudogene pseudogene Approved 9p21.1 09p21.1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 8 2009-02-25 2016-02-18 2016-02-18 392301 ENSG00000225347 OTTHUMG00000019739 NG_009270 SLC25A5P8 PGOHUM00000236006 +HGNC:35468 SLC25A5P9 solute carrier family 25 member 5 pseudogene 9 pseudogene pseudogene Approved 5q13.3 05q13.3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 pseudogene 9 2009-02-25 2016-02-18 2016-02-18 100133074 ENSG00000251078 OTTHUMG00000162489 "AC025170|AC108120" NG_009302 SLC25A5P9 PGOHUM00000235278 +HGNC:10992 SLC25A6 solute carrier family 25 member 6 protein-coding gene gene with protein product Approved Xp22.32 and Yp11.3 Xp22.32 and Yp11.3 "ANT3Y|MGC17525" ANT3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 "Pseudoautosomal region 1|Solute carriers" "715|752" 1990-08-03 2016-02-18 2016-02-18 293 ENSG00000169100 OTTHUMG00000021058 uc004fpg.4 AY007135 NM_001636 CCDS14114 P12236 RGD:1560896 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC25A6 SLC25A6 "300151|403000" SLC25A6 objectId:1064 +HGNC:16554 SLC25A6P1 solute carrier family 25 member 6 pseudogene 1 pseudogene pseudogene Approved 20p11.22 20p11.22 dJ1065O2.2 SLC25A5L "solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5-like|solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6, pseudogene 1" 2001-09-17 2003-10-24 2016-02-18 2016-02-18 128790 ENSG00000233015 OTTHUMG00000032031 NG_003107 SLC25A6P1 PGOHUM00000247463 +HGNC:43850 SLC25A6P2 solute carrier family 25 member 6 pseudogene 2 pseudogene pseudogene Approved 9p21.1 09p21.1 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 2 2012-03-29 2016-02-18 2016-02-18 138412 ENSG00000232203 OTTHUMG00000019735 NG_005651 SLC25A6P2 PGOHUM00000236428 +HGNC:43852 SLC25A6P3 solute carrier family 25 member 6 pseudogene 3 pseudogene pseudogene Approved 1p32.3 01p32.3 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 3 2012-03-29 2016-02-18 2016-02-18 100422686 ENSG00000232846 OTTHUMG00000008962 NG_027091 SLC25A6P3 PGOHUM00000244716 +HGNC:43853 SLC25A6P4 solute carrier family 25 member 6 pseudogene 4 pseudogene pseudogene Approved 18q23 18q23 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 4 2012-03-29 2016-02-18 2016-02-18 100422690 ENSG00000266909 OTTHUMG00000180378 NG_026343 SLC25A6P4 PGOHUM00000235103 +HGNC:43854 SLC25A6P5 solute carrier family 25 member 6 pseudogene 5 pseudogene pseudogene Approved 9q31.2 09q31.2 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 5 2012-03-29 2016-02-18 2016-02-18 100129319 ENSG00000228948 OTTHUMG00000020431 NG_021673 SLC25A6P5 PGOHUM00000236747 +HGNC:43855 SLC25A6P6 solute carrier family 25 member 6 pseudogene 6 pseudogene pseudogene Approved 6q13 06q13 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 pseudogene 6 2012-03-29 2016-02-18 2016-02-18 100128312 ENSG00000218870 OTTHUMG00000014994 NG_022309 SLC25A6P6 PGOHUM00000243242 +HGNC:10980 SLC25A10 solute carrier family 25 member 10 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 DIC solute carrier family 25 (mitochondrial carrier; dicarboxylate transporter), member 10 Solute carriers 752 1998-07-08 2016-02-18 2016-02-18 1468 ENSG00000183048 OTTHUMG00000178173 uc002kbi.5 XM_017024220 "CCDS11786|CCDS59301|CCDS74176" Q9UBX3 "9733776|10072589" MGI:1353497 RGD:621430 SLC25A10 606794 SLC25A10 objectId:1052 +HGNC:10981 SLC25A11 solute carrier family 25 member 11 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 OGC SLC20A4 solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11 Solute carriers 752 1998-09-18 2016-02-18 2016-10-05 8402 ENSG00000108528 OTTHUMG00000099395 uc002fzo.3 X66114 NM_003562 "CCDS11059|CCDS54069" Q02978 "10072597|1457818" MGI:1915113 RGD:708476 SLC25A11 604165 SLC25A11 objectId:1053 +HGNC:10982 SLC25A12 solute carrier family 25 member 12 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 Aralar "solute carrier family 25 (mitochondrial carrier, Aralar), member 12|solute carrier family 25 (aspartate/glutamate carrier), member 12" "Solute carriers|EF-hand domain containing" "752|863" 1999-01-28 2016-02-18 2016-10-05 8604 ENSG00000115840 OTTHUMG00000134290 uc002uhh.4 Y14494 NM_003705 CCDS33327 O75746 "9722566|10702666|11566871" MGI:1926080 RGD:1305181 SLC25A12 603667 SLC25A12 356212 objectId:1054 +HGNC:10983 SLC25A13 solute carrier family 25 member 13 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "CITRIN|ARALAR2" mitochondrial aspartate glutamate carrier 2 CTLN2 "solute carrier family 25, member 13 (citrin)|solute carrier family 25 (aspartate/glutamate carrier), member 13" "Solute carriers|EF-hand domain containing" "752|863" 1999-07-13 2016-02-18 2016-02-18 10165 ENSG00000004864 OTTHUMG00000023074 uc003uof.5 AF118838 NM_014251 "CCDS5645|CCDS55130" Q9UJS0 10369257 MGI:1354721 RGD:1565889 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=SLC25A13 SLC25A13 603859 SLC25A13 118786 objectId:1055 +HGNC:10984 SLC25A14 solute carrier family 25 member 14 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "BMCP1|UCP5" solute carrier family 25 (mitochondrial carrier, brain), member 14 Solute carriers 752 1999-02-09 2016-02-18 2016-10-05 9016 ENSG00000102078 OTTHUMG00000022394 uc033eva.1 AF078544 "NM_022810|NM_003951" "CCDS14623|CCDS14624|CCDS76020|CCDS76021" O95258 9852133 MGI:1330823 RGD:621433 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC25A14 SLC25A14 300242 SLC25A14 objectId:1070 +HGNC:43856 SLC25A14P1 solute carrier family 25 member 14 pseudogene 1 pseudogene pseudogene Approved 4q21.23 04q21.23 solute carrier family 25 (mitochondrial carrier, brain), member 14 pseudogene 1 2012-03-29 2016-02-18 2016-02-18 100288343 ENSG00000213608 OTTHUMG00000161154 NG_030222 SLC25A14P1 PGOHUM00000245987 +HGNC:10985 SLC25A15 solute carrier family 25 member 15 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "ORC1|D13S327" ornithine transporter 1 "ORNT1|HHH" solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 Solute carriers 752 1999-06-28 2016-02-18 2016-10-05 10166 ENSG00000102743 OTTHUMG00000016776 uc001uxn.4 AF112968 NM_014252 CCDS9373 Q9Y619 10369256 MGI:1342274 RGD:1311488 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=SLC25A15 SLC25A15 603861 SLC25A15 118789 objectId:1060 +HGNC:18497 SLC25A15P1 solute carrier family 25 member 15 pseudogene 1 pseudogene pseudogene Approved Yq11.23 Yq11.23 SLC25A15PY1 solute carrier family 25 member 15 pseudogene, Y-linked 1 SLC25A15P "solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 Y-linked pseudogene|solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 1" 2002-05-22 2010-02-24 2016-02-18 2016-10-05 100422624 ENSG00000227629 OTTHUMG00000036811 NG_024787 SLC25A15P1 PGOHUM00000233886 +HGNC:39843 SLC25A15P2 solute carrier family 25 member 15 pseudogene 2 pseudogene pseudogene Approved 13q12.11 13q12.11 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 2 2011-04-01 2016-02-18 2016-02-18 100874522 ENSG00000237164 OTTHUMG00000016490 NG_032358 SLC25A15P2 PGOHUM00000248511 +HGNC:39844 SLC25A15P3 solute carrier family 25 member 15 pseudogene 3 pseudogene pseudogene Approved 13q12.13 13q12.13 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 3 2011-04-01 2016-02-18 2016-02-18 100422635 ENSG00000251299 OTTHUMG00000016593 NG_024903 SLC25A15P3 PGOHUM00000248543 +HGNC:39845 SLC25A15P4 solute carrier family 25 member 15 pseudogene 4 pseudogene pseudogene Approved 21p11.2 21p11.2 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 4 2011-04-01 2016-02-18 2016-02-18 100422636 ENSG00000273872 OTTHUMG00000188293 NG_025052 SLC25A15P4 PGOHUM00000297200 +HGNC:39846 SLC25A15P5 solute carrier family 25 member 15 pseudogene 5 pseudogene pseudogene Approved 22q11.1 22q11.1 solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 pseudogene 5 2011-04-01 2016-02-18 2016-02-18 100422642 ENSG00000249288 OTTHUMG00000142830 NG_027407 SLC25A15P5 PGOHUM00000246199 +HGNC:10986 SLC25A16 solute carrier family 25 member 16 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "GDA|D10S105E|HGT.1|ML7" Graves disease autoantigen solute carrier family 25 (mitochondrial carrier), member 16 Solute carriers 752 1999-07-30 2016-02-18 2016-10-05 8034 ENSG00000122912 OTTHUMG00000018354 uc001joi.4 M31659 NM_001324314 CCDS7280 P16260 "8444471|2575220" MGI:1920382 RGD:1311311 SLC25A16 139080 SLC25A16 objectId:1071 +HGNC:10987 SLC25A17 solute carrier family 25 member 17 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 PMP34 peroxisomal membrane protein (34kD) "solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kD), member 17|solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17" Solute carriers 752 1999-07-30 2016-02-18 2016-02-18 10478 ENSG00000100372 OTTHUMG00000151139 uc003azc.5 Y12860 NM_006358 "CCDS14005|CCDS74868" O43808 9874197 MGI:1342248 RGD:1311498 SLC25A17 606795 SLC25A17 objectId:1072 +HGNC:10988 SLC25A18 solute carrier family 25 member 18 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "solute carrier family 25 (mitochondrial carrier), member 18|solute carrier family 25 (glutamate carrier), member 18" Solute carriers 752 2000-01-31 2016-02-18 2016-10-05 83733 ENSG00000182902 OTTHUMG00000150089 uc002zmp.2 AY008285 NM_031481 CCDS13744 Q9H1K4 "11381032|11897791" MGI:1919053 RGD:1590470 SLC25A18 609303 SLC25A18 objectId:1056 +HGNC:43857 SLC25A18P1 solute carrier family 25 member 18 pseudogene 1 pseudogene pseudogene Approved 10q26.11 10q26.11 "solute carrier family 25 (mitochondrial carrier), member 18 pseudogene 1|solute carrier family 25 (glutamate carrier), member 18 pseudogene 1" 2012-03-29 2016-02-18 2016-02-18 106480776 ENSG00000234309 OTTHUMG00000019134 NG_043978 SLC25A18P1 PGOHUM00000238935 +HGNC:14409 SLC25A19 solute carrier family 25 member 19 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "DNC|MUP1|TPC" MCPHA "solute carrier family 25 (mitochondrial deoxynucleotide carrier), member 19|microcephaly, Amish|solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19" Solute carriers 752 2001-09-27 2016-02-18 2016-02-18 60386 ENSG00000125454 OTTHUMG00000179607 uc002jnt.5 NM_021734 CCDS11720 Q9HC21 "11474176|11226231|19798730" MGI:1914533 RGD:1359554 SLC25A19 606521 SLC25A19 118794 objectId:1073 +HGNC:1421 SLC25A20 solute carrier family 25 member 20 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 CAC "carnitine-acylcarnitine carrier|carnitine/acylcarnitine translocase" CACT solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 Solute carriers 752 1997-08-18 2016-02-18 2016-02-18 788 ENSG00000178537 OTTHUMG00000133538 uc003cva.5 Y10319 NM_000387 CCDS2779 O43772 "9399886|9533014" MGI:1928738 RGD:621443 SLC25A20 613698 SLC25A20 118799 objectId:1076 +HGNC:1422 SLC25A20P1 solute carrier family 25 member 20 pseudogene 1 pseudogene pseudogene Approved 6p12.2 06p12.2 "CACTP|SLC25A20P" "solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 pseudogene|solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 pseudogene 1" 1997-10-27 2010-02-24 2016-02-18 2016-10-05 789 ENSG00000218363 OTTHUMG00000014843 AJ000401 XM_167131 SLC25A20P1 PGOHUM00000243639 +HGNC:14411 SLC25A21 solute carrier family 25 member 21 protein-coding gene gene with protein product Approved 14q13.3 14q13.3 "ODC1|ODC" "solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21|solute carrier family 25 (mitochondrial oxoadipate carrier), member 21" Solute carriers 752 2001-01-18 2016-02-18 2016-02-18 89874 ENSG00000183032 OTTHUMG00000140250 uc001wtz.3 AJ278148 NM_030631 "CCDS9663|CCDS55913" Q9BQT8 11083877 MGI:2445059 RGD:621444 SLC25A21 607571 SLC25A21 objectId:1057 +HGNC:44298 SLC25A21-AS1 SLC25A21 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 14q13.3 14q13.3 2013-05-29 2016-09-26 100129794 ENSG00000258708 OTTHUMG00000170737 NR_033240 +HGNC:19954 SLC25A22 solute carrier family 25 member 22 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "GC1|FLJ13044|NET44|EIEE3" solute carrier family 25 (mitochondrial carrier: glutamate), member 22 Solute carriers 752 2002-12-10 2016-02-18 2016-02-18 79751 ENSG00000177542 OTTHUMG00000133310 uc001lrj.4 AJ428202 NM_024698 CCDS7715 Q9H936 11897791 MGI:1915517 RGD:1307826 SLC25A22 609302 SLC25A22 118803 objectId:1058 +HGNC:19375 SLC25A23 solute carrier family 25 member 23 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "FLJ30339|MGC2615|APC2" solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 "Solute carriers|EF-hand domain containing" "752|863" 2004-05-05 2016-02-18 2016-10-05 79085 ENSG00000125648 OTTHUMG00000180852 uc002mex.2 AJ619962 NM_024103 CCDS32882 Q9BV35 15123600 MGI:1914222 RGD:1588586 SLC25A23 608746 SLC25A23 objectId:1078 +HGNC:20662 SLC25A24 solute carrier family 25 member 24 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "DKFZp586G0123|APC1" solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 "Solute carriers|EF-hand domain containing" "752|863" 2004-05-05 2016-02-18 2016-10-05 29957 ENSG00000085491 OTTHUMG00000011013 uc001dvn.6 AJ619961 NM_013386 "CCDS786|CCDS41361" Q6NUK1 15123600 MGI:1917160 RGD:1311982 SLC25A24 608744 SLC25A24 objectId:1077 +HGNC:48933 SLC25A24P1 SLC25A24 pseudogene 1 pseudogene pseudogene Approved 1p13.3 01p13.3 2013-07-15 2013-07-15 727941 ENSG00000241361 OTTHUMG00000011320 NG_027806 PGOHUM00000244833 +HGNC:48934 SLC25A24P2 SLC25A24 pseudogene 2 pseudogene pseudogene Approved 1p13.3 01p13.3 2013-07-15 2013-07-15 100422608 ENSG00000238118 OTTHUMG00000039831 NG_026966 PGOHUM00000244135 +HGNC:20663 SLC25A25 solute carrier family 25 member 25 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "KIAA1896|PCSCL|MCSC" solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25 "Solute carriers|EF-hand domain containing" "752|863" 2004-05-05 2016-02-18 2016-10-05 114789 ENSG00000148339 OTTHUMG00000020736 uc004bte.5 AJ619963 NM_052901 "CCDS6890|CCDS35151|CCDS48031|CCDS59146|CCDS83420" Q6KCM7 15123600 MGI:1915913 RGD:628666 SLC25A25 608745 SLC25A25 objectId:1079 +HGNC:27844 SLC25A25-AS1 SLC25A25 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.11 09q34.11 2014-08-01 2016-10-03 100289019 ENSG00000234771 OTTHUMG00000020737 "AL833509|BU623777|CA447407" NR_033374 27553025 +HGNC:20661 SLC25A26 solute carrier family 25 member 26 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 26|solute carrier family 25 (S-adenosylmethionine carrier), member 26" Solute carriers 752 2003-12-22 2016-02-18 2016-10-05 115286 ENSG00000144741 OTTHUMG00000149917 uc011bfq.2 AJ580932 NM_173471 "CCDS54604|CCDS2905" Q70HW3 14674884 MGI:1914832 RGD:1308811 SLC25A26 611037 SLC25A26 objectId:1074 +HGNC:21065 SLC25A27 solute carrier family 25 member 27 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "UCP4|FLJ33552" solute carrier family 25, member 27 Solute carriers 752 2003-10-08 2015-12-08 2015-12-08 9481 ENSG00000153291 OTTHUMG00000014786 uc003oyh.4 AK090871 NM_004277 "CCDS43470|CCDS56431" O95847 "10025957|10772343" MGI:1921261 RGD:620787 SLC25A27 613725 SLC25A27 objectId:1069 +HGNC:23472 SLC25A28 solute carrier family 25 member 28 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "MRS3/4|MRS4L" mitoferrin 2 "solute carrier family 25, member 28|solute carrier family 25 (mitochondrial iron transporter), member 28" Solute carriers 752 2003-11-19 2016-02-18 2016-02-18 81894 ENSG00000155287 OTTHUMG00000018886 uc001kpx.3 AF327402 NM_031212 CCDS41559 Q96A46 11297739 MGI:2180509 RGD:1584155 SLC25A28 609767 SLC25A28 objectId:1080 +HGNC:20116 SLC25A29 solute carrier family 25 member 29 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 FLJ38975 C14orf69 "chromosome 14 open reading frame 69|solute carrier family 25, member 29|solute carrier family 25 (mitochondrial carnitine/acylcarnitine carrier), member 29" Solute carriers 752 2002-12-18 2004-01-21 2016-02-18 2016-02-18 123096 ENSG00000197119 OTTHUMG00000171569 uc001yha.4 AK095532 XM_017020979 CCDS32156 Q8N8R3 MGI:2444911 RGD:1308104 SLC25A29 615064 SLC25A29 objectId:1081 +HGNC:27371 SLC25A30 solute carrier family 25 member 30 protein-coding gene gene with protein product Approved 13q14.13 13q14.13 solute carrier family 25, member 30 Solute carriers 752 2004-05-06 2015-12-08 2016-10-05 253512 ENSG00000174032 OTTHUMG00000016853 uc001vag.5 AK074457 XM_170736 "CCDS31967|CCDS66539" Q5SVS4 MGI:1914804 RGD:1359702 SLC25A30 610793 SLC25A30 objectId:1082 +HGNC:42795 SLC25A30-AS1 SLC25A30 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.13 13q14.13 SLC25A30 antisense RNA 1 (non-protein coding) 2011-09-16 2012-08-15 2014-11-19 100874259 ENSG00000251015 OTTHUMG00000163473 uc058wvj.1 NR_047031 +HGNC:25319 SLC25A31 solute carrier family 25 member 31 protein-coding gene gene with protein product Approved 4q28.1 04q28.1 "DKFZP434N1235|ANT4" solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 Solute carriers 752 2005-02-15 2016-02-18 2016-10-05 83447 ENSG00000151475 OTTHUMG00000133300 uc003ifl.4 AL136857 NM_031291 CCDS3733 Q9H0C2 15670820 MGI:1920583 RGD:1596195 SLC25A31 610796 SLC25A31 objectId:1065 +HGNC:29683 SLC25A32 solute carrier family 25 member 32 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 MFTC "solute carrier family 25, member 32|solute carrier family 25 (mitochondrial folate carrier), member 32" Solute carriers 752 2005-10-03 2016-02-18 2016-02-18 81034 ENSG00000164933 OTTHUMG00000164790 uc003yll.5 AF283645 NM_030780 CCDS6300 Q9H2D1 10978331 MGI:1917156 RGD:1565789 SLC25A32 610815 SLC25A32 objectId:1083 +HGNC:29681 SLC25A33 solute carrier family 25 member 33 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "MGC4399|BMSC-MCP|PNC1" "solute carrier family 25, member 33|solute carrier family 25 (pyrimidine nucleotide carrier), member 33" Solute carriers 752 2006-09-21 2016-02-18 2016-02-18 84275 ENSG00000171612 OTTHUMG00000001322 uc001apw.4 AF495714 NM_032315 CCDS103 Q9BSK2 "14715278|16949250" MGI:1917806 RGD:1583942 SLC25A33 610816 SLC25A33 objectId:1084 +HGNC:27653 SLC25A34 solute carrier family 25 member 34 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 DKFZp781A10161 solute carrier family 25, member 34 Solute carriers 752 2005-06-03 2015-12-08 2016-10-05 284723 ENSG00000162461 OTTHUMG00000003063 uc001axb.2 BC027998 NM_207348 CCDS162 Q6PIV7 MGI:2686215 RGD:1359157 SLC25A34 610817 SLC25A34 objectId:1085 +HGNC:31921 SLC25A35 solute carrier family 25 member 35 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 FLJ40217 solute carrier family 25, member 35 Solute carriers 752 2005-06-03 2015-12-08 2015-12-08 399512 ENSG00000125434 OTTHUMG00000178480 uc002gla.5 AY498866 NM_201520 "CCDS11138|CCDS82067" Q3KQZ1 MGI:1919248 RGD:1598229 SLC25A35 610818 SLC25A35 objectId:1086 +HGNC:25554 SLC25A36 solute carrier family 25 member 36 protein-coding gene gene with protein product Approved 3q23 03q23 "FLJ10618|PNC2" "solute carrier family 25, member 36|solute carrier family 25 (pyrimidine nucleotide carrier), member 36" Solute carriers 752 2005-06-03 2016-02-18 2016-02-18 55186 ENSG00000114120 OTTHUMG00000160260 uc003ets.3 AK001480 NM_018155 "CCDS3114|CCDS46927" Q96CQ1 MGI:1924909 RGD:1591928 SLC25A36 616149 SLC25A36 objectId:1087 +HGNC:48935 SLC25A36P1 SLC25A36 pseudogene 1 pseudogene pseudogene Approved 19q13.43 19q13.43 2013-07-15 2013-07-15 106480240 ENSG00000267781 OTTHUMG00000182175 NG_043810 PGOHUM00000234803 +HGNC:29786 SLC25A37 solute carrier family 25 member 37 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "MSCP|MFRN|MFRN1" mitoferrin "solute carrier family 25, member 37|solute carrier family 25 (mitochondrial iron transporter), member 37" Solute carriers 752 2005-06-03 2016-02-18 2016-02-18 51312 ENSG00000147454 OTTHUMG00000163865 uc003xds.4 AF495725 NM_016612 CCDS47828 Q9NYZ2 16511496 MGI:1914962 RGD:1359361 SLC25A37 610387 SLC25A37 objectId:1088 +HGNC:26054 SLC25A38 solute carrier family 25 member 38 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 FLJ20551 solute carrier family 25, member 38 Solute carriers 752 2006-09-21 2015-12-08 2015-12-08 54977 ENSG00000144659 OTTHUMG00000131289 uc003cjo.3 BC013194 NM_017875 CCDS2685 Q96DW6 16949250 MGI:2384782 RGD:1311914 SLC25A38 610819 SLC25A38 200717 objectId:1089 +HGNC:43858 SLC25A38P1 solute carrier family 25 member 38 pseudogene 1 pseudogene pseudogene Approved 1q24.3 01q24.3 2012-03-29 2016-02-18 2016-02-18 441915 ENSG00000229785 OTTHUMG00000034836 NG_006910 SLC25A38P1 PGOHUM00000245087 +HGNC:24279 SLC25A39 solute carrier family 25 member 39 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "FLJ22407|CGI-69" solute carrier family 25, member 39 Solute carriers 752 2006-09-21 2015-12-08 2016-10-05 51629 ENSG00000013306 OTTHUMG00000132628 uc002igm.3 BC096819 NM_016016 "CCDS11482|CCDS45700|CCDS82138" Q9BZJ4 16949250 MGI:1196386 RGD:1306193 SLC25A39 610820 SLC25A39 objectId:1090 +HGNC:43859 SLC25A39P1 solute carrier family 25 member 39 pseudogene 1 pseudogene pseudogene Approved 1q32.1 01q32.1 2012-03-29 2016-02-18 2016-02-18 100420877 ENSG00000226148 OTTHUMG00000041390 NG_027188 SLC25A39P1 PGOHUM00000245161 +HGNC:48936 SLC25A39P2 SLC25A39 pseudogene 2 pseudogene pseudogene Approved 12p13.2 12p13.2 2013-07-15 2013-07-15 107126289 ENSG00000257016 OTTHUMG00000168534 NG_046624 PGOHUM00000239333 +HGNC:29680 SLC25A40 solute carrier family 25 member 40 protein-coding gene gene with protein product Approved 7q21.12 07q21.12 MCFP solute carrier family 25, member 40 Solute carriers 752 2006-09-21 2015-12-08 2015-12-08 55972 ENSG00000075303 OTTHUMG00000131033 uc003uje.4 AF125531 NM_018843 CCDS5610 Q8TBP6 16949250 MGI:2442486 RGD:1308774 SLC25A40 610821 SLC25A40 objectId:1091 +HGNC:28533 SLC25A41 solute carrier family 25 member 41 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "FLJ40442|MGC34725|APC4" solute carrier family 25, member 41 Solute carriers 752 2006-09-21 2015-12-08 2015-12-08 284427 ENSG00000181240 OTTHUMG00000180851 uc010dus.4 AK097761 NM_173637 CCDS45937 Q8N5S1 16949250 MGI:2144215 RGD:1588585 SLC25A41 610822 SLC25A41 objectId:1092 +HGNC:28380 SLC25A42 solute carrier family 25 member 42 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 MGC26694 solute carrier family 25, member 42 Solute carriers 752 2006-09-21 2015-12-08 2015-12-08 284439 ENSG00000181035 OTTHUMG00000183280 uc002nlf.5 NM_178526 CCDS32966 Q86VD7 "16949250|19429682" MGI:1920345 RGD:1592346 SLC25A42 610823 SLC25A42 objectId:1075 +HGNC:30557 SLC25A43 solute carrier family 25 member 43 protein-coding gene gene with protein product Approved Xq24 Xq24 solute carrier family 25, member 43 Solute carriers 752 2006-09-21 2015-12-08 2015-12-08 203427 ENSG00000077713 OTTHUMG00000022272 uc004erd.4 BC019584 NM_145305 CCDS14577 Q8WUT9 16949250 MGI:2684854 RGD:1559928 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC25A43 SLC25A43 300641 SLC25A43 objectId:1093 +HGNC:29036 SLC25A44 solute carrier family 25 member 44 protein-coding gene gene with protein product Approved 1q22 01q22 "FLJ90431|KIAA0446" solute carrier family 25, member 44 Solute carriers 752 2006-09-21 2015-12-08 2015-12-08 9673 ENSG00000160785 OTTHUMG00000014816 uc001fnp.5 AB007915 NM_014655 "CCDS1133|CCDS72943" Q96H78 16949250 MGI:2444391 RGD:1307244 SLC25A44 610824 SLC25A44 objectId:1094 +HGNC:27442 SLC25A45 solute carrier family 25 member 45 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 solute carrier family 25, member 45 Solute carriers 752 2006-09-21 2015-12-08 2015-12-08 283130 ENSG00000162241 OTTHUMG00000166255 uc001odr.1 BC041100 NM_182556 "CCDS41670|CCDS41671|CCDS60850|CCDS76431" Q8N413 16949250 MGI:2147731 RGD:1589953 SLC25A45 610825 SLC25A45 objectId:1095 +HGNC:25198 SLC25A46 solute carrier family 25 member 46 protein-coding gene gene with protein product Approved 5q22.1 05q22.1 solute carrier family 25, member 46 Solute carriers 752 2006-09-21 2015-12-08 2016-10-12 91137 ENSG00000164209 OTTHUMG00000128794 uc003koz.5 BC017169 NM_138773 "CCDS4100|CCDS78045" Q96AG3 "1651562|1651563|16949250" MGI:1914703 RGD:1305072 LRG_1091|http://www.lrg-sequence.org/LRG/LRG_1091 SLC25A46 610826 SLC25A46 436878 objectId:1096 +HGNC:20115 SLC25A47 solute carrier family 25 member 47 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 C14orf68 "chromosome 14 open reading frame 68|solute carrier family 25, member 47" Solute carriers 752 2003-01-13 2010-07-19 2015-12-08 2015-12-08 283600 ENSG00000140107 OTTHUMG00000171571 uc001yhc.4 NM_207117 CCDS9959 Q6Q0C1 MGI:2144766 RGD:1303247 SLC25A47 609911 SLC25A47 objectId:2558 +HGNC:43860 SLC25A47P1 solute carrier family 25 member 47 pseudogene 1 pseudogene pseudogene Approved 11q12.1 11q12.1 2012-03-29 2016-02-18 2016-02-18 105369316 ENSG00000254799 OTTHUMG00000167415 NG_046696 SLC25A47P1 PGOHUM00000261833 +HGNC:30451 SLC25A48 solute carrier family 25 member 48 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "FLJ44862|HDMCP" HCC-down-regulated mitochondrial carrier protein solute carrier family 25, member 48 Solute carriers 752 2010-07-19 2015-12-08 2015-12-08 153328 ENSG00000145832 OTTHUMG00000157007 uc063hex.1 NM_145282 CCDS43366 Q6ZT89 "15322095|19303656" MGI:2145373 RGD:1563703 SLC25A48 616150 SLC25A48 objectId:2559 +HGNC:23323 SLC25A51 solute carrier family 25 member 51 protein-coding gene gene with protein product Approved 9p13.2-p13.1 09p13.2-p13.1 "MGC14836|CG7943" MCART1 "mitochondrial carrier triple repeat 1|solute carrier family 25, member 51" Solute carriers 752 2003-11-07 2012-03-29 2015-12-08 2016-10-11 92014 ENSG00000122696 OTTHUMG00000019935 uc064tdr.1 BC008500 NM_033412 CCDS6614 Q9H1U9 12477932 MGI:2684984 RGD:6502452 SLC25A51 objectId:2560 +HGNC:23325 SLC25A51P1 solute carrier family 25 member 51 pseudogene 1 pseudogene pseudogene Approved 6q12 06q12 bA707M13.1 MCART3P mitochondrial carrier triple repeat 3 pseudogene 2003-11-07 2012-03-29 2016-02-18 2016-02-18 442229 ENSG00000220483 OTTHUMG00000014975 NR_026540 SLC25A51P1 PGOHUM00000243661 +HGNC:23327 SLC25A51P2 solute carrier family 25 member 51 pseudogene 2 pseudogene pseudogene Approved 18p11.31 18p11.31 MCART4P mitochondrial carrier triple repeat 4 pseudogene 2003-11-07 2012-03-29 2016-02-18 2016-10-05 645423 ENSG00000263716 OTTHUMG00000178877 NG_009212 SLC25A51P2 PGOHUM00000234980 +HGNC:31051 SLC25A51P3 solute carrier family 25 member 51 pseudogene 3 pseudogene pseudogene Approved 8q21.13 08q21.13 MCART5P mitochondrial carrier triple repeat 5 pseudogene 2004-03-02 2012-03-29 2016-02-18 2016-02-18 100128119 ENSG00000254181 OTTHUMG00000164578 NG_009213 SLC25A51P3 PGOHUM00000249402 +HGNC:23324 SLC25A52 solute carrier family 25 member 52 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 MCART2 "mitochondrial carrier triple repeat 2|solute carrier family 25, member 52" Solute carriers 752 2003-11-07 2012-03-29 2015-12-08 2016-04-25 147407 ENSG00000141437 OTTHUMG00000179617 uc002kxa.4 XM_084000 CCDS32812 Q3SY17 616153 SLC25A52 objectId:2561 +HGNC:31894 SLC25A53 solute carrier family 25 member 53 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 MCART6 "mitochondrial carrier triple repeat 6|solute carrier family 25, member 53" Solute carriers 752 2005-03-22 2012-03-29 2015-12-08 2015-12-08 401612 ENSG00000269743 OTTHUMG00000022124 uc022cbz.2 NM_001012755 CCDS35363 Q5H9E4 MGI:1914312 RGD:1591860 300941 SLC25A53 objectId:2562 +HGNC:10993 SLC26A1 solute carrier family 26 member 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "SAT-1|EDM4" "solute carrier family 26 (sulfate transporter), member 1|solute carrier family 26 (anion exchanger), member 1" Solute carriers 752 1999-07-30 2016-02-17 2016-02-17 10861 ENSG00000145217 OTTHUMG00000160003 uc003gcb.5 AF297659 "NM_022042|NM_134425" "CCDS33933|CCDS33934" Q9H2B4 MGI:2385894 RGD:620136 SLC26A1 610130 SLC26A1 objectId:1097 +HGNC:10994 SLC26A2 solute carrier family 26 member 2 protein-coding gene gene with protein product Approved 5q32 05q32 DTDST DTD "solute carrier family 26 (sulfate transporter), member 2|solute carrier family 26 (anion exchanger), member 2" Solute carriers 752 1990-09-10 2016-02-17 2016-10-12 1836 ENSG00000155850 OTTHUMG00000130054 uc003lrh.4 U14528 NM_000112 CCDS4300 P50443 7923357 MGI:892977 RGD:620622 LRG_684|http://www.lrg-sequence.org/LRG/LRG_684 SLC26A2 606718 SLC26A2 118813 objectId:1098 +HGNC:3018 SLC26A3 solute carrier family 26 member 3 protein-coding gene gene with protein product Approved 7q22.3-q31.1 07q22.3-q31.1 "DRA|CLD" "congenital chloride diarrhea|solute carrier family 26, member 3|solute carrier family 26 (anion exchanger), member 3" Solute carriers 752 1993-04-01 2016-02-17 2016-10-12 1811 ENSG00000091138 OTTHUMG00000154812 uc003ver.3 L02785 NM_000111 CCDS5748 P40879 "8020951|11087667" MGI:107181 RGD:620623 LRG_683|http://www.lrg-sequence.org/LRG/LRG_683 SLC26A3 126650 SLC26A3 118817 objectId:1099 +HGNC:8818 SLC26A4 solute carrier family 26 member 4 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 PDS pendrin DFNB4 "solute carrier family 26, member 4|solute carrier family 26 (anion exchanger), member 4" Solute carriers 752 1997-10-27 2016-02-17 2016-10-05 5172 ENSG00000091137 OTTHUMG00000154807 uc003vep.4 AF030880 NM_000441 CCDS5746 O43511 "9500541|11087667" MGI:1346029 RGD:3293 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=SLC26A4" SLC26A4 605646 SLC26A4 118821 objectId:1100 +HGNC:22385 SLC26A4-AS1 SLC26A4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q22.3 07q22.3 SLC26A4 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 286002 ENSG00000233705 OTTHUMG00000154777 uc064gyw.1 BC037315 NR_028137 +HGNC:9359 SLC26A5 solute carrier family 26 member 5 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 DFNB61 deafness, neurosensory, autosomal recessive, 61 PRES "prestin (motor protein)|solute carrier family 26 (anion exchanger), member 5" Solute carriers 752 2000-06-08 2005-09-13 2016-02-17 2016-10-05 375611 ENSG00000170615 OTTHUMG00000149911 uc003vbz.4 AC005064 NM_198999 "CCDS5733|CCDS43630|CCDS55150|CCDS5732|CCDS43629" P58743 10821263 MGI:1933154 RGD:69334 SLC26A5 604943 SLC26A5 160337 objectId:1104 +HGNC:14472 SLC26A6 solute carrier family 26 member 6 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 DKFZp586E1422 "pendrin-like protein 1|pendrin L1|sulfate anion transporter|anion transporter 1" "solute carrier family 26, member 6|solute carrier family 26 (anion exchanger), member 6" Solute carriers 752 2001-01-25 2016-02-17 2016-02-17 65010 ENSG00000225697 OTTHUMG00000186381 uc003cuh.4 AF279265 NM_022911 "CCDS43087|CCDS46824|CCDS46825|CCDS46826|CCDS63627|CCDS63628" Q9BXS9 "11087667|11247665" MGI:2159728 RGD:1310197 SLC26A6 610068 SLC26A6 objectId:1101 +HGNC:14467 SLC26A7 solute carrier family 26 member 7 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 SUT2 "solute carrier family 26, member 7|solute carrier family 26 (anion exchanger), member 7" Solute carriers 752 2001-01-25 2016-02-17 2016-10-05 115111 ENSG00000147606 OTTHUMG00000164062 uc003yex.5 AF331521 NM_134266 "CCDS6254|CCDS6255|CCDS75765" Q8TE54 "11834742|11829495|16524946" MGI:2384791 RGD:1310846 SLC26A7 608479 SLC26A7 objectId:1102 +HGNC:14468 SLC26A8 solute carrier family 26 member 8 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "solute carrier family 26, member 8|solute carrier family 26 (anion exchanger), member 8" Solute carriers 752 2001-01-25 2016-02-17 2016-10-05 116369 ENSG00000112053 OTTHUMG00000014586 uc003oln.4 AF331522 XM_017010235 "CCDS4813|CCDS4814" Q96RN1 "11834742|11829495" MGI:2385046 RGD:1308898 SLC26A8 608480 SLC26A8 408636 objectId:1105 +HGNC:14469 SLC26A9 solute carrier family 26 member 9 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 anion transporter/exchanger-9 "solute carrier family 26, member 9|solute carrier family 26 (anion exchanger), member 9" Solute carriers 752 2001-01-25 2016-02-17 2016-02-17 115019 ENSG00000174502 OTTHUMG00000036001 uc001hdq.4 AF331525 NM_052934 "CCDS30989|CCDS30990" Q7LBE3 11834742 MGI:2444594 RGD:1310441 SLC26A9 608481 SLC26A9 objectId:1103 +HGNC:14470 SLC26A10 solute carrier family 26 member 10 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 solute carrier family 26, member 10 Solute carriers 752 2001-01-25 2015-12-08 2016-10-05 65012 ENSG00000135502 OTTHUMG00000128505 uc001spe.4 NM_133489 CCDS8949 Q8NG04 MGI:2143920 RGD:1564851 SLC26A10 SLC26A10 objectId:1106 +HGNC:14471 SLC26A11 solute carrier family 26 member 11 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "solute carrier family 26, member 11|solute carrier family 26 (anion exchanger), member 11" Solute carriers 752 2001-01-25 2016-02-17 2016-10-05 284129 ENSG00000181045 OTTHUMG00000133419 uc002jyc.3 XM_017024505 CCDS11771 Q86WA9 MGI:2444589 RGD:1306178 SLC26A11 610117 SLC26A11 objectId:1107 +HGNC:10995 SLC27A1 solute carrier family 27 member 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FATP1|FATP|MGC71751|FLJ00336|ACSVL5" solute carrier family 27 (fatty acid transporter), member 1 "Acyl-CoA synthetase family|Solute carriers" "40|752" 1999-08-20 2016-02-17 2016-02-17 376497 ENSG00000130304 OTTHUMG00000182878 uc002ngu.2 BC059399 NM_198580 CCDS32953 Q6PCB7 10873384 MGI:1347098 RGD:620927 SLC27A1 600691 SLC27A1 objectId:1108 +HGNC:10996 SLC27A2 solute carrier family 27 member 2 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "FATP2|hFACVL1|VLACS|VLCS|HsT17226|ACSVL1" FACVL1 solute carrier family 27 (fatty acid transporter), member 2 "Acyl-CoA synthetase family|Solute carriers" "40|752" 1999-08-20 2016-02-17 2016-02-17 11001 ENSG00000140284 OTTHUMG00000131643 uc001zxw.4 D88308 NM_003645 "CCDS10133|CCDS53943" O14975 9730624 MGI:1347099 RGD:71103 SLC27A2 603247 SLC27A2 objectId:1109 +HGNC:10997 SLC27A3 solute carrier family 27 member 3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "FATP3|MGC4365|ACSVL3" solute carrier family 27 (fatty acid transporter), member 3 "Acyl-CoA synthetase family|Solute carriers" "40|752" 1999-08-20 2016-02-17 2016-10-05 11000 ENSG00000143554 OTTHUMG00000037155 uc001fcz.3 BC009916 NM_024330 CCDS1053 Q5K4L6 9671728 MGI:1347358 RGD:1310605 SLC27A3 604193 SLC27A3 objectId:1110 +HGNC:10998 SLC27A4 solute carrier family 27 member 4 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "FATP4|ACSVL4" solute carrier family 27 (fatty acid transporter), member 4 "Acyl-CoA synthetase family|Solute carriers" "40|752" 1999-08-20 2016-02-17 2016-10-05 10999 ENSG00000167114 OTTHUMG00000020746 uc004but.4 AF055899 XM_017014222 CCDS6899 Q6P1M0 9878842 MGI:1347347 RGD:1307383 SLC27A4 604194 SLC27A4 208329 objectId:1111 +HGNC:10999 SLC27A5 solute carrier family 27 member 5 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "FATP5|VLACSR|VLCS-H2|VLCSH2|FACVL3|FLJ22987|ACSVL6|ACSB" fatty-acid-Coenzyme A ligase, very long-chain 3 solute carrier family 27 (fatty acid transporter), member 5 "Acyl-CoA synthetase family|Solute carriers" "40|752" 1999-08-20 2016-02-17 2016-02-17 10998 ENSG00000083807 OTTHUMG00000183543 uc002qtc.3 AF064255 NM_012254 "CCDS12983|CCDS82415" Q9Y2P5 "10479480|10749848" MGI:1347100 RGD:708535 SLC27A5 603314 SLC27A5 objectId:1112 +HGNC:11000 SLC27A6 solute carrier family 27 member 6 protein-coding gene gene with protein product Approved 5q23.3 05q23.3 "FATP6|VLCS-H1|FACVL2|ACSVL2" fatty-acid-Coenzyme A ligase, very long-chain 2 solute carrier family 27 (fatty acid transporter), member 6 "Acyl-CoA synthetase family|Solute carriers" "40|752" 1999-08-20 2016-02-17 2016-02-17 28965 ENSG00000113396 OTTHUMG00000128991 uc003kuz.4 AF064254 NM_014031 CCDS4145 Q9Y2P4 "12556534|10479480" MGI:3036230 RGD:1311977 SLC27A6 604196 SLC27A6 objectId:1113 +HGNC:11001 SLC28A1 solute carrier family 28 member 1 protein-coding gene gene with protein product Approved 15q25.3 15q25.3 CNT1 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 1|solute carrier family 28 (concentrative nucleoside transporter), member 1" Solute carriers 752 1999-02-09 2016-02-17 2016-02-17 9154 ENSG00000156222 OTTHUMG00000148668 uc002blg.4 U62967 NM_001321721 "CCDS10334|CCDS10335|CCDS73777" O00337 9124315 MGI:3605073 RGD:621223 SLC28A1 606207 SLC28A1 objectId:1114 +HGNC:11002 SLC28A2 solute carrier family 28 member 2 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "CNT2|SPNT1|HCNT2|HsT17153" "solute carrier family 28 (sodium-coupled nucleoside transporter), member 2|solute carrier family 28 (concentrative nucleoside transporter), member 2" Solute carriers 752 1999-02-09 2016-02-17 2016-10-05 9153 ENSG00000137860 OTTHUMG00000131426 uc001zva.3 U84392 NM_004212 CCDS10121 O43868 9435697 "MGI:1913105|MGI:3702173" RGD:61840 SLC28A2 606208 SLC28A2 objectId:1115 +HGNC:16484 SLC28A3 solute carrier family 28 member 3 protein-coding gene gene with protein product Approved 9q21.32-q21.33 09q21.32-q21.33 CNT3 "solute carrier family 28 (sodium-coupled nucleoside transporter), member 3|solute carrier family 28 (concentrative nucleoside transporter), member 3" Solute carriers 752 2001-08-31 2016-02-17 2016-10-11 64078 ENSG00000197506 OTTHUMG00000020117 uc010mpz.4 AF305210 NM_022127 CCDS6670 Q9HAS3 11032837 MGI:2137361 RGD:621224 SLC28A3 608269 SLC28A3 objectId:1116 +HGNC:11003 SLC29A1 solute carrier family 29 member 1 (Augustine blood group) protein-coding gene gene with protein product Approved 6p21.1 06p21.1 ENT1 solute carrier family 29 (equilibrative nucleoside transporter), member 1 "Blood group antigens|Solute carriers" "454|752" 1997-05-29 2016-03-17 2016-10-12 2030 ENSG00000112759 OTTHUMG00000014759 uc003owv.1 U81375 XM_011514341 CCDS4908 Q99808 "8986748|9344680|25896650" MGI:1927073 RGD:61899 LRG_1027|http://www.lrg-sequence.org/LRG/LRG_1027 SLC29A1 602193 SLC29A1 objectId:1117 +HGNC:11004 SLC29A2 solute carrier family 29 member 2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 DER12 "ENT2|HNP36" solute carrier family 29 (equilibrative nucleoside transporter), member 2 Solute carriers 752 1997-03-19 2016-03-17 2016-10-05 3177 ENSG00000174669 OTTHUMG00000169056 uc058dwm.1 X86681 NM_001532 "CCDS8137|CCDS73326" Q14542 "9192854|9478986" MGI:1345278 RGD:69296 SLC29A2 602110 SLC29A2 objectId:1118 +HGNC:23096 SLC29A3 solute carrier family 29 member 3 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "ENT3|FLJ11160" "solute carrier family 29 (nucleoside transporters), member 3|solute carrier family 29 (equilibrative nucleoside transporter), member 3" Solute carriers 752 2003-10-08 2016-02-17 2016-10-05 55315 ENSG00000198246 OTTHUMG00000018424 uc001jrr.5 AF326987 NM_018344 CCDS7310 Q9BZD2 11396612 MGI:1918529 RGD:727811 LOVD - Leiden Open Variation Database|https://grenada.lumc.nl/LOVD2/shared1/home.php?select_db=SLC29A3 SLC29A3 612373 SLC29A3 173057 objectId:1119 +HGNC:23097 SLC29A4 solute carrier family 29 member 4 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "FLJ34923|ENT4" "solute carrier family 29 (nucleoside transporters), member 4|solute carrier family 29 (equilibrative nucleoside transporter), member 4" Solute carriers 752 2003-10-08 2016-02-17 2016-10-05 222962 ENSG00000164638 OTTHUMG00000023797 uc003sod.4 AK075422 NM_153247 "CCDS5340|CCDS75561" Q7RTT9 12838422 MGI:2385330 RGD:1310545 SLC29A4 609149 SLC29A4 objectId:1120 +HGNC:43783 SLC29A4P1 solute carrier family 29 member 4 pseudogene 1 pseudogene pseudogene Approved 7p11.2 07p11.2 solute carrier family 29 (nucleoside transporters), member 4 pseudogene 1 2012-03-02 2016-02-17 2016-02-17 402509 ENSG00000214668 OTTHUMG00000156099 NG_022537 SLC29A4P1 PGOHUM00000232753 +HGNC:43782 SLC29A4P2 solute carrier family 29 member 4 pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 solute carrier family 29 (nucleoside transporters), member 4 pseudogene 2 2012-03-02 2016-02-17 2016-02-17 100132308 ENSG00000214660 OTTHUMG00000156502 NG_022561 SLC29A4P2 PGOHUM00000233324 +HGNC:11012 SLC30A1 solute carrier family 30 member 1 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 ZRC1 ZNT1 solute carrier family 30 (zinc transporter), member 1 Solute carriers 752 1997-12-12 2016-02-17 2016-02-17 7779 ENSG00000170385 OTTHUMG00000036995 uc001hio.2 AF323590 NM_021194 CCDS1499 Q9Y6M5 MGI:1345281 RGD:61918 SLC30A1 609521 SLC30A1 objectId:1121 +HGNC:11013 SLC30A2 solute carrier family 30 member 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 ZNT2 solute carrier family 30 (zinc transporter), member 2 Solute carriers 752 1997-12-12 2016-02-17 2016-10-05 7780 ENSG00000158014 OTTHUMG00000007508 uc001blg.2 AK023491 NM_032513 "CCDS272|CCDS30644" Q9BRI3 MGI:106637 RGD:3707 SLC30A2 609617 SLC30A2 objectId:1122 +HGNC:11014 SLC30A3 solute carrier family 30 member 3 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 ZNT3 solute carrier family 30 (zinc transporter), member 3 Solute carriers 752 1997-12-12 2016-02-17 2016-02-17 7781 ENSG00000115194 OTTHUMG00000128409 uc002rjk.4 U76010 XM_017004873 CCDS1743 Q99726 8962159 MGI:1345280 RGD:1359689 SLC30A3 602878 SLC30A3 objectId:1123 +HGNC:11015 SLC30A4 solute carrier family 30 member 4 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 ZNT4 solute carrier family 30 (zinc transporter), member 4 Solute carriers 752 1997-12-12 2016-02-17 2016-02-17 7782 ENSG00000104154 OTTHUMG00000131439 uc001zvj.5 NM_013309 CCDS10125 O14863 MGI:1345282 RGD:619750 SLC30A4 602095 SLC30A4 objectId:1124 +HGNC:19089 SLC30A5 solute carrier family 30 member 5 protein-coding gene gene with protein product Approved 5q13.1-q13.2 05q13.1-q13.2 "ZTL1|ZnT-5|FLJ12496|FLJ12756|ZNT5|MGC5499|ZNTL1" solute carrier family 30 (zinc transporter), member 5 Solute carriers 752 2003-02-12 2016-02-17 2016-10-11 64924 ENSG00000145740 OTTHUMG00000131253 uc003jvh.4 AF212235 XM_005248569 "CCDS3996|CCDS34173|CCDS58955" Q8TAD4 "11937503|11904301" MGI:1916298 RGD:1306931 SLC30A5 607819 SLC30A5 objectId:1125 +HGNC:19305 SLC30A6 solute carrier family 30 member 6 protein-coding gene gene with protein product Approved 2p22.3 02p22.3 "FLJ31101|ZNT6" solute carrier family 30 (zinc transporter), member 6 Solute carriers 752 2003-02-12 2016-02-17 2016-02-17 55676 ENSG00000152683 OTTHUMG00000128456 uc002roe.3 AK055663 XM_011532959 "CCDS1780|CCDS54341|CCDS54342|CCDS54343|CCDS82434" Q6NXT4 MGI:2386741 RGD:1309250 SLC30A6 611148 SLC30A6 objectId:1126 +HGNC:19306 SLC30A7 solute carrier family 30 member 7 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "ZnTL2|ZNT7" solute carrier family 30 (zinc transporter), member 7 Solute carriers 752 2003-03-14 2016-02-17 2016-10-05 148867 ENSG00000162695 OTTHUMG00000011815 uc001dtn.3 AF233345 NM_133496 CCDS776 Q8NEW0 12446736 MGI:1913750 RGD:1307873 SLC30A7 611149 SLC30A7 objectId:1127 +HGNC:20303 SLC30A8 solute carrier family 30 member 8 protein-coding gene gene with protein product Approved 8q24.11 08q24.11 solute carrier family 30 (zinc transporter), member 8 Solute carriers 752 2003-03-14 2016-02-17 2016-02-17 169026 ENSG00000164756 OTTHUMG00000164962 uc064psc.1 NM_173851 "CCDS6322|CCDS55272" Q8IWU4 MGI:2442682 RGD:1308282 SLC30A8 611145 SLC30A8 objectId:1128 +HGNC:1329 SLC30A9 solute carrier family 30 member 9 protein-coding gene gene with protein product Approved 4p13 04p13 "HUEL|ZNT9|GAC63" GRIP1-dependent nuclear receptor coactivator C4orf1 "chromosome 4 open reading frame 1|solute carrier family 30 (zinc transporter), member 9" Solute carriers 752 1998-12-03 2003-09-10 2016-02-17 2016-02-17 10463 ENSG00000014824 OTTHUMG00000099387 uc003gwl.4 AF006621 XM_017007654 CCDS3465 Q6PML9 "10409434|11906820" MGI:1923690 RGD:1593180 SLC30A9 604604 SLC30A9 objectId:1129 +HGNC:25355 SLC30A10 solute carrier family 30 member 10 protein-coding gene gene with protein product Approved 1q41 01q41 "DKFZp547M236|ZnT-10|ZRC1|ZNT8" zinc transporter 8 solute carrier family 30, member 10 Solute carriers 752 2005-09-06 2015-12-08 2015-12-08 55532 ENSG00000196660 OTTHUMG00000037434 uc001hlw.4 AY212919 NM_018713 CCDS31026 Q6XR72 15154973 MGI:2685058 RGD:1305098 SLC30A10 611146 SLC30A10 311032 objectId:1130 +HGNC:11016 SLC31A1 solute carrier family 31 member 1 protein-coding gene gene with protein product Approved 9q32 09q32 "hCTR1|CTR1" COPT1 solute carrier family 31 (copper transporter), member 1 Solute carriers 752 1997-10-16 2016-02-17 2016-02-17 1317 ENSG00000136868 OTTHUMG00000020519 uc004bgu.4 U83460 NM_001859 CCDS6789 O15431 9207117 MGI:1333843 RGD:620059 SLC31A1 603085 SLC31A1 objectId:1131 +HGNC:17124 SLC31A1P1 solute carrier family 31 member 1 pseudogene 1 pseudogene pseudogene Approved 3q26.31 03q26.31 CTR1psi SLC31A1P "solute carrier family 31 (copper transporters), member 1 pseudogene|solute carrier family 31 (copper transporter), member 1 pseudogene 1" 2001-11-02 2010-02-24 2016-02-17 2016-02-17 117151 ENSG00000224426 OTTHUMG00000156918 AF238997 NG_009573 11054564 SLC31A1P1 PGOHUM00000237863 +HGNC:11017 SLC31A2 solute carrier family 31 member 2 protein-coding gene gene with protein product Approved 9q32 09q32 "hCTR2|CTR2" copper transporter 2 COPT2 solute carrier family 31 (copper transporter), member 2 Solute carriers 752 1997-10-16 2016-02-17 2016-02-17 1318 ENSG00000136867 OTTHUMG00000021037 uc004bgq.4 NM_001860 CCDS6788 O15432 9207117 MGI:1333844 RGD:1307963 SLC31A2 603088 SLC31A2 objectId:1132 +HGNC:11018 SLC32A1 solute carrier family 32 member 1 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "VGAT|bA122O1.1" VIAAT "vesicular inhibitory amino acid transporter|solute carrier family 32 (GABA vesicular transporter), member 1" Solute carriers 752 1999-08-20 2016-02-17 2016-10-05 140679 ENSG00000101438 OTTHUMG00000032457 uc002xjc.3 AL133519 NM_080552 CCDS13307 Q9H598 19843525 MGI:1194488 RGD:621402 SLC32A1 616440 SLC32A1 objectId:1133 +HGNC:95 SLC33A1 solute carrier family 33 member 1 protein-coding gene gene with protein product Approved 3q25.31 03q25.31 "AT-1|AT1" "ACATN|SPG42" "acetyl-Coenzyme A transporter|spastic paraplegia 42 (autosomal dominant)|solute carrier family 33 (acetyl-CoA transporter), member 1" Solute carriers 752 1999-02-12 2002-12-06 2016-02-17 2016-02-17 9197 ENSG00000169359 OTTHUMG00000158481 uc003fao.4 D88152 NM_004733 CCDS3173 O00400 "9096318|19061983" MGI:1332247 RGD:620653 SLC33A1 603690 SLC33A1 180215 objectId:1134 +HGNC:11019 SLC34A1 solute carrier family 34 member 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "NAPI-3|NPTIIa|SLC11" "sodium/phosphate co-transporter|solute carrier family 17 (sodium phosphate), member 2|Na+-phosphate cotransporter type II" "NPT2|SLC17A2" "solute carrier family 34 (sodium phosphate), member 1|solute carrier family 34 (type II sodium/phosphate cotransporter), member 1" Solute carriers 752 1994-05-25 2016-02-17 2016-02-17 6569 ENSG00000131183 OTTHUMG00000130857 uc003mgk.5 L13258 NM_003052 "CCDS4418|CCDS54953" Q06495 "8327470|8693007" MGI:1345284 RGD:3708 SLC34A1 182309 SLC34A1 227390 objectId:1135 +HGNC:11020 SLC34A2 solute carrier family 34 member 2 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 NAPI-3B "solute carrier family 34 (sodium phosphate), member 2|solute carrier family 34 (type II sodium/phosphate cotransporter), member 2" Solute carriers 752 1999-07-19 2016-02-17 2016-02-17 10568 ENSG00000157765 OTTHUMG00000097757 uc003grr.4 AF111856 NM_006424 "CCDS3435|CCDS54750" O95436 "10329428|10610722" MGI:1342284 RGD:620889 SLC34A2 604217 SLC34A2 118831 objectId:1136 +HGNC:20305 SLC34A3 solute carrier family 34 member 3 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "NPTIIc|FLJ38680" "solute carrier family 34 (sodium phosphate), member 3|solute carrier family 34 (type II sodium/phosphate cotransporter), member 3" Solute carriers 752 2003-08-08 2016-02-17 2016-02-17 142680 ENSG00000198569 OTTHUMG00000131780 uc011met.2 AB055000 NM_080877 CCDS7038 Q8N130 "11880379|16358215|16358214" MGI:2159410 RGD:708551 SLC34A3 609826 SLC34A3 118834 objectId:1137 +HGNC:11021 SLC35A1 solute carrier family 35 member A1 protein-coding gene gene with protein product Approved 6q15 06q15 "CMPST|hCST" "solute carrier family 35 (UDP-galactose transporter), member 1|solute carrier family 35 (CMP-sialic acid transporter), member A1" Solute carriers 752 1999-10-05 2016-02-17 2016-02-17 10559 ENSG00000164414 OTTHUMG00000015177 uc011dzj.3 D87969 NM_006416 "CCDS5010|CCDS55043" P78382 "9010752|9644260" MGI:1345622 RGD:1311359 SLC35A1 605634 SLC35A1 139197 objectId:1138 +HGNC:11022 SLC35A2 solute carrier family 35 member A2 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "UGAT|UGT|UGT1|UGT2|UGTL" UGALT "solute carrier family 35 (UDP-galactose transporter), member 2|solute carrier family 35 (UDP-galactose transporter), member A2" Solute carriers 752 1995-02-24 2016-02-17 2016-02-17 7355 ENSG00000102100 OTTHUMG00000024129 uc004dlo.4 D88146 NM_005660 "CCDS14311|CCDS35247|CCDS43937|CCDS65253|CCDS65254|CCDS75973|CCDS75974|CCDS75975" P78381 8128316 MGI:1345297 RGD:2293497 SLC35A2 314375 SLC35A2 358431 objectId:1139 +HGNC:11023 SLC35A3 solute carrier family 35 member A3 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3|solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3" Solute carriers 752 1999-10-05 2016-02-17 2016-10-05 23443 ENSG00000117620 OTTHUMG00000010805 uc001dsp.3 AB021981 NM_012243 "CCDS762|CCDS60204|CCDS60205" Q9Y2D2 10393322 MGI:1917648 RGD:1308615 SLC35A3 605632 SLC35A3 371162 objectId:1140 +HGNC:20753 SLC35A4 solute carrier family 35 member A4 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 solute carrier family 35, member A4 Solute carriers 752 2003-03-31 2015-12-04 2015-12-04 113829 ENSG00000176087 OTTHUMG00000129495 uc063hwh.1 AJ420598 NM_080670 CCDS4231 Q96G79 MGI:1915093 RGD:628792 SLC35A4 SLC35A4 objectId:1141 +HGNC:20792 SLC35A5 solute carrier family 35 member A5 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 FLJ20730 solute carrier family 35, member A5 Solute carriers 752 2003-04-04 2015-12-04 2016-10-05 55032 ENSG00000138459 OTTHUMG00000159263 uc003dze.5 AK000737 NM_017945 CCDS2967 Q9BS91 MGI:1921352 RGD:1564361 SLC35A5 SLC35A5 objectId:1142 +HGNC:20798 SLC35B1 solute carrier family 35 member B1 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 UGTREL1 solute carrier family 35, member B1 Solute carriers 752 2003-04-07 2015-12-04 2016-10-05 10237 ENSG00000121073 OTTHUMG00000161638 uc002iph.3 D16978 NM_005827 CCDS11552 P78383 9010752 MGI:1343133 RGD:727783 SLC35B1 610790 SLC35B1 objectId:1143 +HGNC:16872 SLC35B2 solute carrier family 35 member B2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 UGTrel4 "solute carrier family 35, member B2|solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2" Solute carriers 752 2003-04-10 2016-02-17 2016-02-17 347734 ENSG00000157593 OTTHUMG00000014760 uc011dvu.4 AK075456 NM_001286517 "CCDS34462|CCDS69127|CCDS75462|CCDS75463" Q8TB61 MGI:1921086 RGD:1565318 SLC35B2 610788 SLC35B2 objectId:1144 +HGNC:21601 SLC35B3 solute carrier family 35 member B3 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 "CGI-19|dJ453H5.1|PAPST2" 3' phosphoadenosine 5' phosphosulfate transporter 2 C6orf196 "chromosome 6 open reading frame 196|solute carrier family 35, member B3|solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B3" Solute carriers 752 2003-06-25 2003-09-10 2016-02-17 2016-02-17 51000 ENSG00000124786 OTTHUMG00000014224 uc003myb.5 AF132953 NM_015948 CCDS4508 Q9H1N7 10810093 MGI:1913978 RGD:1307183 SLC35B3 610845 SLC35B3 objectId:1145 +HGNC:20584 SLC35B4 solute carrier family 35 member B4 protein-coding gene gene with protein product Approved 7q33 07q33 "FLJ14697|YEA4" "solute carrier family 35, member B4|solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4" Solute carriers 752 2003-09-09 2016-02-17 2016-02-17 84912 ENSG00000205060 OTTHUMG00000155321 uc003vrn.4 AB052892 NM_032826 CCDS34756 Q969S0 MGI:1931249 RGD:1308985 SLC35B4 610923 SLC35B4 objectId:1146 +HGNC:20197 SLC35C1 solute carrier family 35 member C1 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "FUCT1|FLJ11320" "solute carrier family 35, member C1|solute carrier family 35 (GDP-fucose transporter), member C1" Solute carriers 752 2003-10-08 2016-02-17 2016-10-12 55343 ENSG00000181830 OTTHUMG00000166519 uc001nbp.4 NM_018389 "CCDS7914|CCDS44575" Q96A29 "11326279|11326280" MGI:2443301 RGD:1309463 "Congenital Disorder of Glycosylation pages|http://www.euroglycanet.org/|SLC35C1base: Mutation registry for Leucocyte adhesion deficiency I I (LAD-II) (previously known as FUCT1base)|http://structure.bmc.lu.se/idbase/SLC35C1base/|LRG_107|http://www.lrg-sequence.org/LRG/LRG_107" SLC35C1 605881 SLC35C1 118838 objectId:1147 +HGNC:17117 SLC35C2 solute carrier family 35 member C2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "CGI-15|bA394O2.1" "C20orf5|OVCOV1" "ovarian cancer overexpressed 1|solute carrier family 35, member C2|solute carrier family 35 (GDP-fucose transporter), member C2" Solute carriers 752 2001-11-23 2003-10-10 2016-02-17 2016-02-17 51006 ENSG00000080189 OTTHUMG00000033050 uc002xrr.5 NM_015945 "CCDS13396|CCDS13397|CCDS63292" Q9NQQ7 "10810093|11549316" MGI:2385166 RGD:1311250 SLC35C2 SLC35C2 objectId:1148 +HGNC:20800 SLC35D1 solute carrier family 35 member D1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "UGTREL7|KIAA0260" "solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1|solute carrier family 35 (UDP-GlcA/UDP-GalNAc transporter), member D1" Solute carriers 752 2003-04-09 2016-02-17 2016-02-17 23169 ENSG00000116704 OTTHUMG00000009360 uc001ddk.3 AB044343 NM_015139 CCDS636 Q9NTN3 11322953 MGI:2140361 RGD:1309843 SLC35D1 610804 SLC35D1 168079 objectId:1149 +HGNC:20799 SLC35D2 solute carrier family 35 member D2 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 "UGTrel8|SQV7L" "solute carrier family 35, member D2|solute carrier family 35 (UDP-GlcNAc/UDP-glucose transporter), member D2" Solute carriers 752 2003-10-07 2016-02-17 2016-10-05 11046 ENSG00000130958 OTTHUMG00000020293 uc004awc.4 AB122077 XR_001746170 "CCDS6717|CCDS69625" Q76EJ3 15607426 MGI:1917734 RGD:1309518 SLC35D2 609182 SLC35D2 objectId:1150 +HGNC:15621 SLC35D3 solute carrier family 35 member D3 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 FRCL1 solute carrier family 35, member D3 Solute carriers 752 2003-10-07 2015-12-04 2016-10-05 340146 ENSG00000182747 OTTHUMG00000015651 uc003qhe.4 XM_294017 CCDS34544 Q5M8T2 MGI:1923407 RGD:1309428 SLC35D3 612519 SLC35D3 objectId:1151 +HGNC:20803 SLC35E1 solute carrier family 35 member E1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 FLJ14251 solute carrier family 35, member E1 Solute carriers 752 2003-04-09 2015-12-04 2015-12-04 79939 ENSG00000127526 OTTHUMG00000152575 uc010xph.3 AK024313 NM_024881 CCDS12346 Q96K37 MGI:2142403 RGD:1561342 SLC35E1 SLC35E1 objectId:1152 +HGNC:42046 SLC35E1P1 solute carrier family 35 member E1 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 solute carrier family 35, member E1 pseudogene 1 2011-06-01 2015-12-04 2015-12-04 727991 ENSG00000238286 OTTHUMG00000016518 NG_007300 SLC35E1P1 PGOHUM00000248512 +HGNC:20863 SLC35E2 solute carrier family 35 member E2 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 KIAA0447 solute carrier family 35, member E2 Solute carriers 752 2003-04-14 2015-12-04 2015-12-04 9906 ENSG00000215790 OTTHUMG00000000823 uc001aia.3 AB007916 XM_049733 "CCDS33|CCDS55560" P0CK97 MGI:2444240 SLC35E2 SLC35E2 objectId:1153 +HGNC:33941 SLC35E2B solute carrier family 35 member E2B protein-coding gene gene with protein product Approved 1p36.33 01p36.33 solute carrier family 35, member E2B Solute carriers 752 2010-07-19 2015-12-04 2015-12-04 728661 ENSG00000189339 OTTHUMG00000078639 uc057bht.1 XR_001737391 CCDS44041 P0CK96 MGI:2444240 RGD:1309076 SLC35E2B SLC35E2B objectId:2563 +HGNC:20864 SLC35E3 solute carrier family 35 member E3 protein-coding gene gene with protein product Approved 12q15 12q15 BLOV1 solute carrier family 35, member E3 Solute carriers 752 2003-04-14 2015-12-04 2015-12-04 55508 ENSG00000175782 OTTHUMG00000169282 uc001suh.4 "AF148713|AY358943" NM_018656 CCDS41808 Q7Z769 12975309 MGI:2448489 RGD:1564876 SLC35E3 SLC35E3 objectId:1154 +HGNC:17058 SLC35E4 solute carrier family 35 member E4 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 solute carrier family 35, member E4 Solute carriers 752 2003-11-25 2015-12-04 2015-12-04 339665 ENSG00000100036 OTTHUMG00000151110 uc003ais.2 XM_290973 "CCDS13882|CCDS82708" Q6ICL7 MGI:2144150 RGD:708484 SLC35E4 SLC35E4 objectId:1155 +HGNC:21483 SLC35F1 solute carrier family 35 member F1 protein-coding gene gene with protein product Approved 6q22.2-q22.31 06q22.2-q22.31 dJ230I3.1 C6orf169 "chromosome 6 open reading frame 169|solute carrier family 35, member F1" Solute carriers 752 2003-11-26 2015-12-04 2016-10-11 222553 ENSG00000196376 OTTHUMG00000015460 uc003pxx.4 BC028615 XM_167044 CCDS34524 Q5T1Q4 MGI:2139810 RGD:1559576 SLC35F1 SLC35F1 objectId:1156 +HGNC:23615 SLC35F2 solute carrier family 35 member F2 protein-coding gene gene with protein product Approved 11q22.3 11q22.3 FLJ13018 solute carrier family 35, member F2 Solute carriers 752 2003-11-25 2015-12-04 2015-12-04 54733 ENSG00000110660 OTTHUMG00000166366 uc001pjq.3 NM_017515 CCDS41709 Q8IXU6 9119394 MGI:1919272 RGD:1311242 SLC35F2 SLC35F2 objectId:1157 +HGNC:23616 SLC35F3 solute carrier family 35 member F3 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 FLJ37712 solute carrier family 35, member F3 Solute carriers 752 2003-11-25 2015-12-04 2016-10-05 148641 ENSG00000183780 OTTHUMG00000037929 uc001hvy.1 NM_173508 "CCDS1600|CCDS73050" Q8IY50 MGI:2444426 RGD:1589548 SLC35F3 SLC35F3 objectId:1158 +HGNC:19845 SLC35F4 solute carrier family 35 member F4 protein-coding gene gene with protein product Approved 14q22.3-q23.1 14q22.3-q23.1 FLJ37712 C14orf36 "chromosome 14 open reading frame 36|solute carrier family 35, member F4" Solute carriers 752 2002-11-27 2003-11-28 2015-12-04 2016-10-11 341880 ENSG00000151812 OTTHUMG00000171317 uc059bxf.1 XM_292260 CCDS76684 A4IF30 MGI:1922538 RGD:1561109 SLC35F4 SLC35F4 objectId:1159 +HGNC:23617 SLC35F5 solute carrier family 35 member F5 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 FLJ22004 solute carrier family 35, member F5 Solute carriers 752 2003-11-25 2015-12-04 2015-12-04 80255 ENSG00000115084 OTTHUMG00000131361 uc002tku.2 AF529364 NM_025181 "CCDS2119|CCDS82503" Q8WV83 MGI:1921400 RGD:1308125 SLC35F5 SLC35F5 objectId:1160 +HGNC:26055 SLC35F6 solute carrier family 35 member F6 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "FLJ20555|ANT2BP|TANGO9" "ANT2-binding protein|transport and golgi organization 9 homolog (Drosophila)" C2orf18 "chromosome 2 open reading frame 18|solute carrier family 35, member F6" 2004-01-14 2012-12-07 2015-12-04 2016-10-05 54978 ENSG00000213699 OTTHUMG00000128407 uc002rhp.2 AK075164 NM_017877 CCDS1728 Q8N357 "15911612|19154410" MGI:1922169 RGD:1309228 objectId:2564 +HGNC:26607 SLC35G1 solute carrier family 35 member G1 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 "FLJ33990|C10orf60" TMEM20 "transmembrane protein 20|solute carrier family 35, member G1" Solute carriers 752 2004-03-04 2011-08-03 2015-12-04 2015-12-04 159371 ENSG00000176273 OTTHUMG00000018779 uc001kjf.3 AK091309 NM_153226 "CCDS7432|CCDS44459" Q2M3R5 21569384 MGI:2444789 RGD:1595908 SLC35G1 objectId:2565 +HGNC:28480 SLC35G2 solute carrier family 35 member G2 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "MGC3295|DKFZp564K2464" TMEM22 "transmembrane protein 22|solute carrier family 35, member G2" Solute carriers 752 2004-03-04 2012-03-09 2015-12-04 2015-12-04 80723 ENSG00000168917 OTTHUMG00000159787 uc003erg.4 BC022557 NM_025246 CCDS3091 Q8TBE7 11230166 MGI:2685365 RGD:1306109 SLC35G2 objectId:2566 +HGNC:26848 SLC35G3 solute carrier family 35 member G3 protein-coding gene gene with protein product Approved 17q12 17q12 FLJ40154 "TMEM21A|AMAC1" "transmembrane protein 21A|acyl-malonyl condensing enzyme 1|solute carrier family 35, member G3" Solute carriers 752 2004-03-04 2011-08-03 2015-12-04 2016-10-05 146861 ENSG00000164729 OTTHUMG00000132929 uc002hjd.3 AK097473 NM_152462 CCDS11293 Q8N808 MGI:1927128 SLC35G3 objectId:2567 +HGNC:31043 SLC35G4 solute carrier family 35 member G4 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "AMAC1L1|SLC35G4P" "acyl-malonyl condensing enzyme 1-like 1|solute carrier family 35, member G4, pseudogene|solute carrier family 35, member G4" Solute carriers 752 2004-11-12 2014-10-01 2015-12-04 2015-12-04 646000 ENSG00000236396 OTTHUMG00000180598 XM_928960 CCDS82241 P0C7Q5 17101974 SLC35G4 PGOHUM00000263439 objectId:2568 +HGNC:15546 SLC35G5 solute carrier family 35 member G5 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "AMAC|AMAC1L2" "acyl-malonyl condensing enzyme 1-like 2|solute carrier family 35, member G5" Solute carriers 752 2001-04-25 2011-08-03 2015-12-04 2015-12-04 83650 ENSG00000177710 OTTHUMG00000090653 uc003wtp.2 AJ291677 NM_054028 CCDS5980 Q96KT7 615199 SLC35G5 objectId:2569 +HGNC:31351 SLC35G6 solute carrier family 35 member G6 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "TMEM21B|AMAC1L3" "transmembrane protein 21B|acyl-malonyl condensing enzyme 1-like 3|solute carrier family 35, member G6" Solute carriers 752 2004-03-04 2011-08-03 2015-12-04 2015-12-04 643664 ENSG00000259224 OTTHUMG00000187017 uc010cmj.2 NM_001102614 CCDS45603 P0C7Q6 MGI:1927128 RGD:1308025 SLC35G6 objectId:2570 +HGNC:18761 SLC36A1 solute carrier family 36 member 1 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "LYAAT-1|PAT1|TRAMD3" solute carrier family 36 (proton/amino acid symporter), member 1 Solute carriers 752 2002-10-11 2016-02-17 2016-02-17 206358 ENSG00000123643 OTTHUMG00000130125 uc063ivf.1 AK057340 NM_078483 "CCDS4316|CCDS78073|CCDS83035" Q7Z2H8 "11959859|11390972" MGI:2445299 RGD:619801 SLC36A1 606561 SLC36A1 objectId:1161 +HGNC:18762 SLC36A2 solute carrier family 36 member 2 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "PAT2|tramdorin|TRAMD1" solute carrier family 36 (proton/amino acid symporter), member 2 Solute carriers 752 2003-01-13 2016-02-17 2016-02-17 153201 ENSG00000186335 OTTHUMG00000130129 uc003lty.3 AY162214 XM_006714756 CCDS4315 Q495M3 11959859 MGI:1891430 RGD:620492 SLC36A2 608331 SLC36A2 173500 objectId:1162 +HGNC:19659 SLC36A3 solute carrier family 36 member 3 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "PAT3|TRAMD2|tramdorin2" solute carrier family 36, member 3 Solute carriers 752 2003-08-01 2015-12-08 2015-12-08 285641 ENSG00000186334 OTTHUMG00000130128 uc003ltw.3 AY162215 NM_181774 "CCDS4314|CCDS47316" Q495N2 12809675 MGI:2665001 RGD:1309092 SLC36A3 608332 SLC36A3 objectId:1163 +HGNC:19660 SLC36A4 solute carrier family 36 member 4 protein-coding gene gene with protein product Approved 11q21 11q21 "PAT4|FLJ38932" solute carrier family 36 (proton/amino acid symporter), member 4 Solute carriers 752 2003-08-08 2016-02-17 2016-02-17 120103 ENSG00000180773 OTTHUMG00000167368 uc001pdn.5 AY162216 XM_017017174 "CCDS8291|CCDS66202" Q6YBV0 MGI:2442595 RGD:1311528 SLC36A4 613760 SLC36A4 objectId:1164 +HGNC:11024 SLC37A1 solute carrier family 37 member 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "solute carrier family 37 (glycerol-3-phosphate transporter), member 1|solute carrier family 37 (glucose-6-phosphate transporter), member 1" Solute carriers 752 2000-05-23 2016-02-17 2016-02-17 54020 ENSG00000160190 OTTHUMG00000086803 uc002zbi.3 AJ269529 NM_001320537 CCDS13689 P57057 11112347 MGI:2446181 RGD:1308587 SLC37A1 608094 SLC37A1 objectId:1165 +HGNC:20644 SLC37A2 solute carrier family 37 member 2 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 FLJ00171 "solute carrier family 37 (glycerol-3-phosphate transporter), member 2|solute carrier family 37 (glucose-6-phosphate transporter), member 2" Solute carriers 752 2003-03-14 2016-02-17 2016-02-17 219855 ENSG00000134955 OTTHUMG00000165879 uc010sau.3 AK074100 XM_166184 "CCDS31714|CCDS44757" Q8TED4 MGI:1929693 RGD:1564160 SLC37A2 SLC37A2 objectId:1166 +HGNC:20651 SLC37A3 solute carrier family 37 member 3 protein-coding gene gene with protein product Approved 7q34 07q34 DKFZp761N0624 solute carrier family 37, member 3 Solute carriers 752 2003-03-14 2015-12-08 2015-12-08 84255 ENSG00000157800 OTTHUMG00000157343 uc003vvo.5 AK074823 NM_032295 "CCDS5858|CCDS5859|CCDS75669" Q8NCC5 MGI:1919394 RGD:1310346 SLC37A3 SLC37A3 objectId:1167 +HGNC:4061 SLC37A4 solute carrier family 37 member 4 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "GSD1b|GSD1c|GSD1d" "G6PT1|G6PT2|G6PT3" "glucose-6-phosphatase, transport (glucose-6-phosphate) protein 1|solute carrier family 37 (glucose-6-phosphate transporter), member 4" Solute carriers 752 1998-07-15 2003-09-10 2016-02-17 2016-10-12 2542 ENSG00000137700 OTTHUMG00000166352 uc058idd.1 Y15409 NM_001467 O43826 "9428641|9463334" MGI:1316650 RGD:62066 LRG_187|http://www.lrg-sequence.org/LRG/LRG_187 SLC37A4 602671 SLC37A4 119474 objectId:1168 +HGNC:13447 SLC38A1 solute carrier family 38 member 1 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "ATA1|NAT2|SAT1" solute carrier family 38, member 1 Solute carriers 752 2002-01-22 2015-12-08 2015-12-08 81539 ENSG00000111371 OTTHUMG00000169470 uc001rpb.5 AF271070 XM_011538784 "CCDS41774|CCDS61106" Q9H2H9 10891391 MGI:2145895 RGD:69645 SLC38A1 608490 SLC38A1 objectId:1169 +HGNC:13448 SLC38A2 solute carrier family 38 member 2 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "SAT2|ATA2|KIAA1382|SNAT2" solute carrier family 38, member 2 Solute carriers 752 2002-01-25 2015-12-08 2015-12-08 54407 ENSG00000134294 OTTHUMG00000169471 uc001rpg.4 AB037803 XR_944589 "CCDS8749|CCDS76551" Q96QD8 "10747860|17237199" MGI:1915010 RGD:69420 SLC38A2 605180 SLC38A2 objectId:1170 +HGNC:18044 SLC38A3 solute carrier family 38 member 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "G17|SN1" solute carrier family 38, member 3 Solute carriers 752 2002-01-22 2015-12-08 2016-10-05 10991 ENSG00000188338 OTTHUMG00000156764 uc032rmu.2 U49082 NM_006841 CCDS74940 Q99624 "10619430|10823827" MGI:1923507 RGD:628620 SLC38A3 604437 SLC38A3 objectId:1172 +HGNC:14679 SLC38A4 solute carrier family 38 member 4 protein-coding gene gene with protein product Approved 12q13 12q13 "PAAT|NAT3|ATA3" solute carrier family 38, member 4 Solute carriers 752 2002-01-25 2015-12-08 2015-12-08 55089 ENSG00000139209 OTTHUMG00000169518 uc001rpj.2 AF193836 NM_018018 CCDS8750 Q969I6 11414754 MGI:1916604 RGD:621836 SLC38A4 608065 SLC38A4 objectId:1171 +HGNC:18070 SLC38A5 solute carrier family 38 member 5 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "SN2|JM24" solute carrier family 38, member 5 Solute carriers 752 2002-01-25 2015-12-08 2015-12-08 92745 ENSG00000017483 OTTHUMG00000024117 uc033ecm.1 AF276889 NM_033518 CCDS14293 Q8WUX1 11243884 MGI:2148066 RGD:620702 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLC38A5 SLC38A5 300649 SLC38A5 objectId:1173 +HGNC:19863 SLC38A6 solute carrier family 38 member 6 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 NAT-1 solute carrier family 38, member 6 Solute carriers 752 2002-12-10 2015-12-08 2015-12-08 145389 ENSG00000139974 OTTHUMG00000140335 uc001xfg.3 AF070578 XM_017021020 "CCDS9751|CCDS53900" Q8IZM9 MGI:3648156 RGD:1310330 SLC38A6 616518 SLC38A6 objectId:1174 +HGNC:25582 SLC38A7 solute carrier family 38 member 7 protein-coding gene gene with protein product Approved 16q21 16q21 FLJ10815 solute carrier family 38, member 7 Solute carriers 752 2008-01-22 2015-12-08 2015-12-08 55238 ENSG00000103042 OTTHUMG00000133491 uc002eod.2 BC001961 NM_018231 "CCDS10800|CCDS76883" Q9NVC3 MGI:2679005 RGD:1303268 SLC38A7 614236 SLC38A7 objectId:1175 +HGNC:32434 SLC38A8 solute carrier family 38 member 8 protein-coding gene gene with protein product Approved 16q23.3 16q23.3 solute carrier family 38, member 8 Solute carriers 752 2008-02-18 2015-12-08 2015-12-08 146167 ENSG00000166558 OTTHUMG00000176588 uc002fhg.1 NM_001080442 CCDS32495 A6NNN8 MGI:2685433 RGD:1560237 SLC38A8 615585 SLC38A8 400638 objectId:1176 +HGNC:26907 SLC38A9 solute carrier family 38 member 9 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 FLJ90709 solute carrier family 38, member 9 Solute carriers 752 2008-02-18 2015-12-08 2015-12-08 153129 ENSG00000177058 OTTHUMG00000131189 uc003jqf.3 NM_173514 "CCDS3968|CCDS58947|CCDS58948|CCDS75243" Q8NBW4 "25561175|25567906" MGI:1918839 RGD:1311881 SLC38A9 616203 SLC38A9 objectId:1177 +HGNC:28237 SLC38A10 solute carrier family 38 member 10 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "MGC15523|PP1744" solute carrier family 38, member 10 Solute carriers 752 2008-02-18 2015-12-08 2015-12-08 124565 ENSG00000157637 OTTHUMG00000168049 uc002kab.5 BC014642 NM_138570 "CCDS11780|CCDS42397" Q9HBR0 MGI:1919305 RGD:1306356 SLC38A10 616525 SLC38A10 objectId:1178 +HGNC:26836 SLC38A11 solute carrier family 38 member 11 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "FLJ39822|AVT2" solute carrier family 38, member 11 Solute carriers 752 2008-02-18 2015-12-08 2015-12-08 151258 ENSG00000169507 OTTHUMG00000132144 uc002ucu.3 NM_173512 "CCDS2224|CCDS56142" Q08AI6 MGI:2443383 RGD:1306005 SLC38A11 616526 SLC38A11 objectId:1179 +HGNC:12876 SLC39A1 solute carrier family 39 member 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 ZIP1 ZIRTL "zinc/iron regulated transporter-like|solute carrier family 39 (zinc transporter), member 1" Solute carriers 752 2000-02-07 2002-02-15 2016-02-17 2016-10-05 27173 ENSG00000143570 OTTHUMG00000037158 uc031ppi.1 BC007886 NM_014437 "CCDS1055|CCDS72920" Q9NY26 "10610721|10681536" MGI:1353474 RGD:1305241 SLC39A1 604740 SLC39A1 objectId:1180 +HGNC:17127 SLC39A2 solute carrier family 39 member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 ZIP2 solute carrier family 39 (zinc transporter), member 2 Solute carriers 752 2002-02-12 2016-02-17 2016-10-05 29986 ENSG00000165794 OTTHUMG00000029616 uc001vyr.4 AF186081 NM_014579 "CCDS9563|CCDS58303" Q9NP94 "10681536|7751801" MGI:2684326 RGD:1306291 SLC39A2 612166 SLC39A2 objectId:1181 +HGNC:17128 SLC39A3 solute carrier family 39 member 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ZIP3 solute carrier family 39 (zinc transporter), member 3 Solute carriers 752 2002-02-12 2016-02-17 2016-02-17 29985 ENSG00000141873 OTTHUMG00000180440 uc002lwg.4 AF052125 NM_144564 "CCDS12093|CCDS45909" Q9BRY0 10681536 MGI:2147269 RGD:1310863 SLC39A3 612168 SLC39A3 objectId:1182 +HGNC:17129 SLC39A4 solute carrier family 39 member 4 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "ZIP4|AWMS2" AEZ "acrodermatitis enteropathica, zinc-deficiency type|solute carrier family 39 (zinc transporter), member 4" Solute carriers 752 2002-02-13 2016-02-17 2016-02-17 55630 ENSG00000147804 OTTHUMG00000165208 uc003zcq.4 AK025537 NM_017767 "CCDS6424|CCDS43782" Q6P5W5 "12801924|12659941|14709598" MGI:1919277 RGD:1306701 SLC39A4 607059 SLC39A4 119482 objectId:1183 +HGNC:20502 SLC39A5 solute carrier family 39 member 5 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "solute carrier family 39 (metal ion transporter), member 5|solute carrier family 39 (zinc transporter), member 5" Solute carriers 752 2003-10-08 2016-02-17 2016-02-17 283375 ENSG00000139540 OTTHUMG00000156962 uc010sqj.3 NM_173596 CCDS8912 Q6ZMH5 MGI:1919336 RGD:1310322 SLC39A5 608730 SLC39A5 objectId:1184 +HGNC:18607 SLC39A6 solute carrier family 39 member 6 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 LIV-1 "solute carrier family 39 (metal ion transporter), member 6|solute carrier family 39 (zinc transporter), member 6" Solute carriers 752 2003-10-08 2016-02-17 2016-02-17 25800 ENSG00000141424 OTTHUMG00000178965 uc010dmy.4 U41060 NM_012319 "CCDS42428|CCDS45854" Q13433 "12659941|12839489" MGI:2147279 RGD:1304664 SLC39A6 608731 SLC39A6 objectId:1185 +HGNC:4927 SLC39A7 solute carrier family 39 member 7 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "H2-KE4|D6S2244E|KE4|RING5|ZIP7" HKE4 "HLA class II region expressed gene KE4|solute carrier family 39 (zinc transporter), member 7" Solute carriers 752 2000-07-25 2003-10-27 2016-02-17 2016-10-05 7922 ENSG00000112473 OTTHUMG00000031238 uc003odf.4 AF117221 NM_006979 CCDS43453 Q92504 "8812499|1855816|19246244|15705588" MGI:95909 RGD:1593280 SLC39A7 601416 SLC39A7 objectId:1186 +HGNC:20862 SLC39A8 solute carrier family 39 member 8 protein-coding gene gene with protein product Approved 4q24 04q24 BIGM103 "solute carrier family 39 (metal ion transporter), member 8|solute carrier family 39 (zinc transporter), member 8" Solute carriers 752 2003-10-08 2016-02-17 2016-02-17 64116 ENSG00000138821 OTTHUMG00000131120 uc011ceo.2 NM_022154 "CCDS3656|CCDS47117" Q9C0K1 "12504855|12659941" MGI:1914797 RGD:1308236 SLC39A8 608732 SLC39A8 objectId:1187 +HGNC:20182 SLC39A9 solute carrier family 39 member 9 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 FLJ11274 solute carrier family 39, member 9 Solute carriers 752 2003-10-08 2015-12-08 2015-12-08 55334 ENSG00000029364 OTTHUMG00000171232 uc001xle.5 NM_018375 "CCDS9795|CCDS58327|CCDS58328|CCDS81816" Q9NUM3 MGI:1914820 RGD:1311236 SLC39A9 SLC39A9 objectId:1188 +HGNC:20861 SLC39A10 solute carrier family 39 member 10 protein-coding gene gene with protein product Approved 2q32.3 02q32.3 "KIAA1265|FLJ90515|DKFZp564L2123" "solute carrier family 39 (metal ion transporter), member 10|solute carrier family 39 (zinc transporter), member 10" Solute carriers 752 2003-10-08 2016-02-17 2016-10-05 57181 ENSG00000196950 OTTHUMG00000154380 uc002utg.5 XM_047707 CCDS33353 Q9ULF5 12659941 MGI:1914515 RGD:1307321 SLC39A10 608733 SLC39A10 objectId:1189 +HGNC:14463 SLC39A11 solute carrier family 39 member 11 protein-coding gene gene with protein product Approved 17q24.3-q25.1 17q24.3-q25.1 C17orf26 "chromosome 17 open reading frame 26|solute carrier family 39, member 11" Solute carriers 752 2001-03-05 2003-10-24 2015-12-08 2016-10-11 201266 ENSG00000133195 OTTHUMG00000178306 uc002jja.4 AF331643 XM_006721754 "CCDS11690|CCDS54160" Q8N1S5 11707075 MGI:1917056 RGD:1311981 SLC39A11 616508 SLC39A11 objectId:1190 +HGNC:20860 SLC39A12 solute carrier family 39 member 12 protein-coding gene gene with protein product Approved 10p12.33 10p12.33 FLJ30499 "solute carrier family 39 (metal ion transporter), member 12|solute carrier family 39 (zinc transporter), member 12" Solute carriers 752 2003-10-08 2016-02-17 2016-02-17 221074 ENSG00000148482 OTTHUMG00000017759 uc001ipo.2 NM_152725 "CCDS7124|CCDS44362|CCDS60493|CCDS60494" Q504Y0 12659941 MGI:2139274 RGD:1309305 SLC39A12 608734 SLC39A12 objectId:1191 +HGNC:44881 SLC39A12-AS1 SLC39A12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p12.33 10p12.33 2012-12-11 2012-12-11 100129213 ENSG00000226083 OTTHUMG00000017758 uc001ipq.1 NM_001145195 +HGNC:20859 SLC39A13 solute carrier family 39 member 13 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 FLJ25785 "solute carrier family 39 (metal ion transporter), member 13|solute carrier family 39 (zinc transporter), member 13" Solute carriers 752 2003-10-08 2016-02-17 2016-02-17 91252 ENSG00000165915 OTTHUMG00000166890 uc001nff.5 NM_152264 "CCDS7934|CCDS44592|CCDS81564" Q96H72 12659941 MGI:1915677 RGD:1304695 SLC39A13 608735 SLC39A13 159403 objectId:1192 +HGNC:20858 SLC39A14 solute carrier family 39 member 14 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "KIAA0062|NET34|ZIP14" "solute carrier family 39 (metal ion transporter), member 14|solute carrier family 39 (zinc transporter), member 14" Solute carriers 752 2003-10-23 2016-02-17 2016-10-05 23516 ENSG00000104635 OTTHUMG00000097791 uc003xbp.5 D31887 XM_046677 "CCDS6030|CCDS47822|CCDS47823" Q15043 12659941 MGI:2384851 RGD:1307026 SLC39A14 608736 SLC39A14 objectId:1193 +HGNC:10909 SLC40A1 solute carrier family 40 member 1 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 "MTP1|IREG1|FPN1|HFE4" ferroportin 1 SLC11A3 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 3|solute carrier family 40 (iron-regulated transporter), member 1" Solute carriers 752 2000-01-04 2003-06-05 2016-02-17 2016-10-12 30061 ENSG00000138449 OTTHUMG00000132662 uc002uqp.5 AF215636 XM_017003938 CCDS2299 Q9NP59 10828623 MGI:1315204 RGD:620180 LRG_837|http://www.lrg-sequence.org/LRG/LRG_837 SLC40A1 604653 SLC40A1 119486 objectId:1194 +HGNC:19429 SLC41A1 solute carrier family 41 member 1 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 MgtE solute carrier family 41 (magnesium transporter), member 1 Solute carriers 752 2003-02-26 2016-02-17 2016-02-17 254428 ENSG00000133065 OTTHUMG00000036000 uc001hdh.2 AJ514402 XM_005245069 CCDS30988 Q8IVJ1 "12810078|18367447" MGI:2444823 RGD:1311397 SLC41A1 610801 SLC41A1 objectId:1195 +HGNC:31045 SLC41A2 solute carrier family 41 member 2 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 DKFZP434K0427 "solute carrier family 41, member 2|solute carrier family 41 (magnesium transporter), member 2" Solute carriers 752 2004-03-11 2016-02-17 2016-10-05 84102 ENSG00000136052 OTTHUMG00000156965 uc001tla.4 BC036734 NM_032148 CCDS9100 Q96JW4 MGI:2442940 RGD:1307292 SLC41A2 610802 SLC41A2 objectId:1196 +HGNC:31046 SLC41A3 solute carrier family 41 member 3 protein-coding gene gene with protein product Approved 3q21.2-q21.3 03q21.2-q21.3 FLJ20473 solute carrier family 41, member 3 Solute carriers 752 2004-01-26 2015-12-08 2016-10-11 54946 ENSG00000114544 OTTHUMG00000162678 uc062njm.1 NM_017836 "CCDS33842|CCDS33843|CCDS33844|CCDS43144|CCDS54635" Q96GZ6 MGI:1918949 RGD:1589573 SLC41A3 610803 SLC41A3 objectId:1197 +HGNC:9225 SLC43A1 solute carrier family 43 member 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "R00504|PB39" POV1 "prostate cancer overexpressed gene 1|solute carrier family 43 (amino acid system L transporter), member 1" Solute carriers 752 1998-10-02 2003-09-12 2016-02-17 2016-02-17 8501 ENSG00000149150 OTTHUMG00000167030 uc001nkl.4 AF045584 NM_003627 CCDS7958 O75387 "9255310|9722952" MGI:1931352 RGD:1308229 SLC43A1 603733 SLC43A1 objectId:1201 +HGNC:23087 SLC43A2 solute carrier family 43 member 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 MGC34680 solute carrier family 43 (amino acid system L transporter), member 2 Solute carriers 752 2004-11-17 2016-02-17 2016-02-17 124935 ENSG00000167703 OTTHUMG00000090345 uc002fsv.5 BC027923 NM_152346 "CCDS11006|CCDS67107|CCDS67108" Q8N370 23268354 MGI:2442746 RGD:1305819 SLC43A2 610791 SLC43A2 objectId:1202 +HGNC:17466 SLC43A3 solute carrier family 43 member 3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "SEEEG-1|Eeg1|DKFZp762A227|FOAP-13|PRO1659" likely ortholog of mouse embryonic epithelial gene 1 solute carrier family 43, member 3 Solute carriers 752 2004-02-16 2015-12-08 2016-10-05 29015 ENSG00000134802 OTTHUMG00000167113 uc001nki.4 AL157431 NM_017611 "CCDS7956|CCDS60784" Q8NBI5 "7531438|11704567" MGI:1931054 RGD:1312016 SLC43A3 SLC43A3 objectId:1203 +HGNC:18798 SLC44A1 solute carrier family 44 member 1 protein-coding gene gene with protein product Approved 9q31.1-q31.2 09q31.1-q31.2 "CDw92|CTL1|CHTL1|CD92" CDW92 "CDW92 antigen|solute carrier family 44 (choline transporter), member 1" "CD molecules|Solute carriers" "471|752" 2004-02-06 2005-09-06 2016-02-17 2016-10-11 23446 ENSG00000070214 OTTHUMG00000020421 uc004bcn.5 AJ420812 NM_080546 "CCDS6763|CCDS75868|CCDS83390" Q8WWI5 "11698453|10677542" MGI:2140592 RGD:621426 SLC44A1 606105 SLC44A1 objectId:1204 CDW92 +HGNC:17292 SLC44A2 solute carrier family 44 member 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 CTL2 solute carrier family 44 (choline transporter), member 2 Solute carriers 752 2005-09-06 2016-02-17 2016-02-17 57153 ENSG00000129353 OTTHUMG00000180585 uc002mpf.4 AF070636 NM_001145056 "CCDS12245|CCDS54216" Q8IWA5 "10677542|15715662" MGI:1915932 RGD:1309680 SLC44A2 606106 SLC44A2 objectId:1205 +HGNC:28689 SLC44A3 solute carrier family 44 member 3 protein-coding gene gene with protein product Approved 1p21.3 01p21.3 "MGC45474|CTL3" "solute carrier family, member 3|solute carrier family 44, member 3" Solute carriers 752 2005-09-06 2015-12-08 2016-10-05 126969 ENSG00000143036 OTTHUMG00000010700 uc001dqv.6 BC033858 NM_152369 "CCDS751|CCDS44176|CCDS58011|CCDS58012|CCDS58013|CCDS72827" Q8N4M1 "15715662|12975309" MGI:2384860 RGD:1305808 SLC44A3 SLC44A3 objectId:1206 +HGNC:13941 SLC44A4 solute carrier family 44 member 4 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "NG22|CTL4|FLJ14491|TPPT" C6orf29 "chromosome 6 open reading frame 29|solute carrier family 44, member 4" Solute carriers 752 2002-04-05 2005-09-06 2015-12-08 2016-10-05 80736 ENSG00000204385 OTTHUMG00000031133 uc063wub.1 AF134726 NM_025257 "CCDS4724|CCDS54989|CCDS54990" Q53GD3 "10677542|15715662|24379411" MGI:1917379 RGD:1303167 SLC44A4 606107 SLC44A4 objectId:1207 +HGNC:28524 SLC44A5 solute carrier family 44 member 5 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "MGC34032|CTL5" solute carrier family 44, member 5 Solute carriers 752 2005-09-06 2015-12-08 2015-12-08 204962 ENSG00000137968 OTTHUMG00000009721 uc001dgu.4 BC034580 NM_152697 "CCDS667|CCDS44164" Q8NCS7 15715662 MGI:3035141 RGD:1564620 SLC44A5 SLC44A5 objectId:1208 +HGNC:17939 SLC45A1 solute carrier family 45 member 1 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 H+/sugar symporter DNB5 "deleted in neuroblastoma 5|solute carrier family 45, member 1" Solute carriers 752 2003-03-06 2005-10-04 2015-12-08 2016-04-25 50651 ENSG00000162426 OTTHUMG00000000503 uc001apb.3 AF118274 NM_001080397 CCDS30577 Q9Y2W3 10729226 MGI:2653235 RGD:708502 SLC45A1 605763 SLC45A1 objectId:1209 +HGNC:16472 SLC45A2 solute carrier family 45 member 2 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "AIM-1|OCA4" MATP "membrane associated transporter|solute carrier family 45, member 2" Solute carriers 752 2003-08-12 2005-10-06 2015-12-08 2016-10-05 51151 ENSG00000164175 OTTHUMG00000090719 uc003jid.4 AF172849 NM_016180 "CCDS3901|CCDS43308|CCDS75232" Q9UMX9 "11916009|11574907" MGI:2153040 RGD:1306690 "Albinism Database|http://albinismdb.med.umn.edu/|Mutations of the Membrane-associated Transport Protein Gene (MATP)|http://www.retina-international.org/files/sci-news/matpmut.htm" SLC45A2 606202 SLC45A2 119665 objectId:1210 +HGNC:8642 SLC45A3 solute carrier family 45 member 3 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "IPCA-6|prostein|IPCA-2|IPCA-8" "PCANAP6|PCANAP2|PCANAP8" "prostate cancer associated protein 6|prostate cancer associated protein 2|prostate cancer associated protein 8|solute carrier family 45, member 3" Solute carriers 752 2000-04-13 2005-10-04 2015-12-08 2015-12-08 85414 ENSG00000158715 OTTHUMG00000037223 uc001hda.2 AF109301 NM_033102 CCDS1458 Q96JT2 "10613842|11245466" MGI:1922082 RGD:1309764 SLC45A3 605097 SLC45A3 objectId:1211 +HGNC:29196 SLC45A4 solute carrier family 45 member 4 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 KIAA1126 solute carrier family 45, member 4 Solute carriers 752 2005-10-04 2015-12-08 2015-12-08 57210 ENSG00000022567 OTTHUMG00000164393 uc003ywd.3 AB032952 XM_050325 "CCDS34948|CCDS69550|CCDS75795" Q5BKX6 MGI:2146236 RGD:1309971 SLC45A4 SLC45A4 objectId:1212 +HGNC:30521 SLC46A1 solute carrier family 46 member 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "HCP1|MGC9564|PCFT" "heme carrier protein 1|proton-coupled folate transporter" "solute carrier family 46, member 1|solute carrier family 46 (folate transporter), member 1" Solute carriers 752 2007-03-29 2016-02-17 2016-10-12 113235 ENSG00000076351 OTTHUMG00000179415 uc032ezi.2 AK054669 NM_080669 "CCDS74019|CCDS74020" Q96NT5 "16143108|17129779" MGI:1098733 RGD:1309472 LRG_183|http://www.lrg-sequence.org/LRG/LRG_183 SLC46A1 611672 SLC46A1 139193 objectId:1213 +HGNC:16055 SLC46A2 solute carrier family 46 member 2 protein-coding gene gene with protein product Approved 9q32 09q32 Ly110 TSCOT "thymic stromal co-transporter|solute carrier family 46, member 2" Solute carriers 752 2001-07-10 2007-03-29 2015-12-08 2015-12-08 57864 ENSG00000119457 OTTHUMG00000020513 uc004bgk.3 AF242557 NM_033051 CCDS6786 Q9BY10 "10978518|12826694" MGI:1353616 RGD:1310485 SLC46A2 608956 SLC46A2 objectId:1214 +HGNC:27501 SLC46A3 solute carrier family 46 member 3 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "DKFZp686A1775|FLJ42613" solute carrier family 46, member 3 Solute carriers 752 2007-03-29 2015-12-08 2015-12-08 283537 ENSG00000139508 OTTHUMG00000016650 uc001ush.4 NM_181785 "CCDS9332|CCDS45021" Q7Z3Q1 MGI:1918956 RGD:1307594 SLC46A3 616764 SLC46A3 objectId:1215 +HGNC:25588 SLC47A1 solute carrier family 47 member 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "FLJ10847|MATE1" multidrug and toxin extrusion 1 solute carrier family 47 (multidrug and toxin extrusion), member 1 Solute carriers 752 2007-05-03 2016-02-17 2016-02-17 55244 ENSG00000142494 OTTHUMG00000059466 uc002gvy.2 NM_018242 CCDS11209 Q96FL8 "16330770|16996621|16928787" "MGI:1914723|MGI:3588190" RGD:1311123 SLC47A1 609832 SLC47A1 objectId:1216 +HGNC:51849 SLC47A1P1 solute carrier family 47 member 1 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 solute carrier family 47 (multidrug and toxin extrusion), member 1 pseudogene 1 2015-09-10 2016-02-17 2016-02-17 107075108 ENSG00000228983 OTTHUMG00000130722 NG_046556 PGOHUM00000294309 +HGNC:26439 SLC47A2 solute carrier family 47 member 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "FLJ31196|MATE2|MATE2-K" multidrug and toxin extrusion 2 solute carrier family 47 (multidrug and toxin extrusion), member 2 Solute carriers 752 2007-05-18 2016-02-17 2016-02-17 146802 ENSG00000180638 OTTHUMG00000059464 uc002gwe.5 AB250364 NM_152908 "CCDS11211|CCDS58530" Q86VL8 "16996621|16807400" "MGI:1914723|MGI:3588190" RGD:1562382 SLC47A2 609833 SLC47A2 objectId:1217 +HGNC:26035 SLC48A1 solute carrier family 48 member 1 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "FLJ20489|hHRG-1|HRG1" solute carrier family 48 (heme transporter), member 1 Solute carriers 752 2008-10-17 2016-02-17 2016-02-17 55652 ENSG00000211584 OTTHUMG00000156983 uc001rqd.4 NM_017842 CCDS8755 Q6P1K1 18418376 MGI:1914989 RGD:1562880 SLC48A1 612187 SLC48A1 objectId:1218 +HGNC:30657 SLC50A1 solute carrier family 50 member 1 protein-coding gene gene with protein product Approved 1q22 01q22 "SCP|RP11-540D14.5|slv|RZPDo834D038D|HsSWEET1|SWEET1" stromal cell protein RAG1AP1 "recombination activating gene 1 activating protein 1|solute carrier family 50 (sugar efflux transporter), member 1" Solute carriers 752 2005-10-11 2010-11-30 2016-02-17 2016-02-17 55974 ENSG00000169241 OTTHUMG00000035333 uc001fhj.5 "AF126023|AF126024" NM_018845 "CCDS1093|CCDS44238|CCDS44239|CCDS72929|CCDS72930" Q9BRV3 21107422 MGI:107417 RGD:1308478 SLC50A1 613683 SLC50A1 objectId:1914 +HGNC:29955 SLC51A solute carrier family 51 alpha subunit protein-coding gene gene with protein product Approved 3q29 03q29 OSTalpha organic solute transporter, alpha subunit solute carrier family 51, alpha subunit Solute carriers 752 2012-08-03 2015-12-08 2015-12-08 200931 ENSG00000163959 OTTHUMG00000155684 uc003fwd.4 NM_152672 CCDS3314 Q86UW1 "12719432|20538072" MGI:2146634 RGD:1311100 612084 SLC51A objectId:1915 +HGNC:29956 SLC51B solute carrier family 51 beta subunit protein-coding gene gene with protein product Approved 15q22.31 15q22.31 OSTbeta organic solute transporter beta subunit solute carrier family 51, beta subunit Solute carriers 752 2012-08-03 2015-12-08 2015-12-08 123264 ENSG00000186198 OTTHUMG00000133116 uc002aog.3 NM_178859 CCDS10199 Q86UW2 "12719432|20538072" MGI:3582052 RGD:1565748 612085 SLC51B objectId:1916 +HGNC:30225 SLC52A1 solute carrier family 52 member 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "FLJ10060|GPCR42|PAR2|hRFT1|RFVT1" riboflavin transporter 1 GPR172B "G protein-coupled receptor 172B|solute carrier family 52 (riboflavin transporter), member 1" Solute carriers 752 2004-07-19 2012-02-29 2016-02-17 2016-10-05 55065 ENSG00000132517 OTTHUMG00000099448 uc002gap.5 AY070775 NM_017986 CCDS11066 Q9NWF4 "12740431|18632736" 607883 SLC52A1 321640 objectId:2571 +HGNC:30224 SLC52A2 solute carrier family 52 member 2 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "FLJ11856|PAR1|GPCR41|D15Ertd747e|RFVT2|hRFT3" GPR172A "G protein-coupled receptor 172A|solute carrier family 52 (riboflavin transporter), member 2" Solute carriers 752 2004-07-19 2012-02-29 2016-02-17 2016-02-17 79581 ENSG00000185803 uc003zcc.4 AY070774 NM_024531 CCDS6423 Q9HAB3 12740431 MGI:1289288 RGD:1560410 607882 SLC52A2 304678 objectId:2572 +HGNC:16187 SLC52A3 solute carrier family 52 member 3 protein-coding gene gene with protein product Approved 20p13 20p13 "bA371L19.1|hRFT2|RFVT3" hypothetical protein LOC113278 C20orf54 "chromosome 20 open reading frame 54|solute carrier family 52 (riboflavin transporter), member 3" Solute carriers 752 2001-07-17 2012-02-29 2016-02-17 2016-02-17 113278 ENSG00000101276 OTTHUMG00000031647 uc284pqm.1 AL118502 NM_033409 CCDS13007 Q9NQ40 "11780052|19122205" MGI:1916948 RGD:1304644 SLC52A3 613350 SLC52A3 227053 objectId:2573 +HGNC:10956 SLCO1A2 solute carrier organic anion transporter family member 1A2 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "OATP|OATP1A2|OATP-A" SLC21A3 "solute carrier family 21 (organic anion transporter), member 3|solute carrier organic anion transporter family, member 1A2" Solute carriers 752 1997-12-05 2003-11-26 2015-11-18 2016-10-05 6579 ENSG00000084453 OTTHUMG00000156259 uc001res.3 NM_021094 CCDS8686 P46721 9007731 "MGI:3647159|MGI:1351896|MGI:1351906|MGI:1351891|MGI:1351865|MGI:3643685" SLCO1A2 602883 SLCO1A2 objectId:1219 +HGNC:10959 SLCO1B1 solute carrier organic anion transporter family member 1B1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "OATP-C|LST-1|OATP1B1" SLC21A6 "solute carrier family 21 (organic anion transporter), member 6|solute carrier organic anion transporter family, member 1B1" Solute carriers 752 1999-11-26 2003-11-26 2015-11-18 2016-10-12 10599 ENSG00000134538 OTTHUMG00000169047 uc001req.5 NM_006446 CCDS8685 Q9Y6L6 10358072 MGI:1351899 LRG_1022|http://www.lrg-sequence.org/LRG/LRG_1022 SLCO1B1 604843 SLCO1B1 241999 objectId:1220 +HGNC:10961 SLCO1B3 solute carrier organic anion transporter family member 1B3 protein-coding gene gene with protein product Approved 12p12 12p12 "OATP8|OATP1B3" SLC21A8 "solute carrier family 21 (organic anion transporter), member 8|solute carrier organic anion transporter family, member 1B3" Solute carriers 752 2000-02-02 2003-11-26 2015-11-18 2015-11-18 28234 ENSG00000111700 OTTHUMG00000169011 uc001rel.5 NM_019844 CCDS8684 Q9NPD5 MGI:1351899 RGD:69300 SLCO1B3 605495 SLCO1B3 292437 objectId:1221 +HGNC:32934 SLCO1B7 solute carrier organic anion transporter family member 1B7 (putative) protein-coding gene gene with protein product Approved 12p12.2 12p12.2 "LST3|SLC21A21" "solute carrier organic anion transporter family, member 1B7 (non-functional)|solute carrier organic anion transporter family member 1B7 (non-functional)" Solute carriers 752 2011-07-12 2016-01-29 2016-10-05 338821 ENSG00000205754 OTTHUMG00000169045 uc010sin.2 AF401642 NM_001009562 CCDS44843 G3V0H7 MGI:1351899 SLCO1B7 SLCO1B7 +HGNC:13819 SLCO1C1 solute carrier organic anion transporter family member 1C1 protein-coding gene gene with protein product Approved 12p12.2 12p12.2 "OATP-F|OATP1C1|OATP1" SLC21A14 "solute carrier family 21 (organic anion transporter), member 14|solute carrier organic anion transporter family, member 1C1" Solute carriers 752 2000-11-09 2003-11-26 2015-11-18 2015-11-18 53919 ENSG00000139155 OTTHUMG00000168966 uc001rei.3 AF260704 NM_017435 "CCDS8683|CCDS53757|CCDS53758|CCDS53759" Q9NYB5 MGI:1889679 RGD:628660 SLCO1C1 613389 SLCO1C1 objectId:1222 +HGNC:10955 SLCO2A1 solute carrier organic anion transporter family member 2A1 protein-coding gene gene with protein product Approved 3q22.1-q22.2 03q22.1-q22.2 "PGT|OATP2A1" "SLC21A2|MATR1" "solute carrier family 21 (prostaglandin transporter), member 2|matrin F/G 1|solute carrier organic anion transporter family, member 2A1" Solute carriers 752 1996-11-15 2003-11-26 2015-11-18 2016-10-12 6578 ENSG00000174640 OTTHUMG00000159745 uc003eqa.4 NM_005630 CCDS3084 Q92959 "8787677|9618293" MGI:1346021 RGD:3051 LRG_841|http://www.lrg-sequence.org/LRG/LRG_841 SLCO2A1 601460 SLCO2A1 291830 objectId:1223 +HGNC:10962 SLCO2B1 solute carrier organic anion transporter family member 2B1 protein-coding gene gene with protein product Approved 11q13 11q13 "OATP-B|OATP2B1" SLC21A9 "solute carrier family 21 (organic anion transporter), member 9|solute carrier organic anion transporter family, member 2B1" Solute carriers 752 2000-02-01 2003-11-26 2015-11-18 2015-11-18 11309 ENSG00000137491 OTTHUMG00000165420 uc001owb.4 AB026256 NM_007256 "CCDS8235|CCDS44683|CCDS53679" O94956 MGI:1351872 RGD:621391 SLCO2B1 604988 SLCO2B1 objectId:1224 +HGNC:10952 SLCO3A1 solute carrier organic anion transporter family member 3A1 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "OATP-D|OATP3A1" SLC21A11 "solute carrier family 21 (organic anion transporter), member 11|solute carrier organic anion transporter family, member 3A1" Solute carriers 752 2000-02-01 2003-11-26 2015-11-18 2016-10-05 28232 ENSG00000176463 OTTHUMG00000149846 uc002bqx.3 AB031050 NM_013272 "CCDS10371|CCDS45354" Q9UIG8 MGI:1351867 RGD:620227 SLCO3A1 612435 SLCO3A1 objectId:1225 +HGNC:10953 SLCO4A1 solute carrier organic anion transporter family member 4A1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "OATP-E|OATP4A1" SLC21A12 "solute carrier family 21 (organic anion transporter), member 12|solute carrier organic anion transporter family, member 4A1" Solute carriers 752 2000-02-01 2003-11-26 2015-11-18 2016-10-05 28231 ENSG00000101187 OTTHUMG00000032923 uc002ydb.1 AB031051 NM_016354 CCDS13501 Q96BD0 10873595 MGI:1351866 RGD:620228 SLCO4A1 612436 SLCO4A1 I01.972 objectId:1226 +HGNC:40537 SLCO4A1-AS1 SLCO4A1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 2014-06-13 2014-11-19 100127888 ENSG00000232803 OTTHUMG00000032925 NR_024470 +HGNC:23612 SLCO4C1 solute carrier organic anion transporter family member 4C1 protein-coding gene gene with protein product Approved 5q21.1 05q21.1 "SLC21A20|OATP4C1|OATPX|OATP-H" solute carrier organic anion transporter family, member 4C1 Solute carriers 752 2003-11-25 2015-11-18 2016-10-05 353189 ENSG00000173930 OTTHUMG00000162757 uc003knm.4 AY273896 NM_180991 CCDS34205 Q6ZQN7 MGI:2442784 RGD:1303048 SLCO4C1 609013 SLCO4C1 objectId:1227 +HGNC:19046 SLCO5A1 solute carrier organic anion transporter family member 5A1 protein-coding gene gene with protein product Approved 8q13.3 08q13.3 "OATPRP4|OATP-J|OATP5A1" SLC21A15 "solute carrier family 21 (organic anion transporter), member 15|solute carrier organic anion transporter family, member 5A1" Solute carriers 752 2003-03-31 2003-11-26 2015-11-18 2016-10-05 81796 ENSG00000137571 OTTHUMG00000165121 uc003xyl.4 AF205075 NM_030958 "CCDS6205|CCDS55242|CCDS55243" Q9H2Y9 12507753 MGI:2443431 RGD:1307132 SLCO5A1 613543 SLCO5A1 I01.972 objectId:1228 +HGNC:23613 SLCO6A1 solute carrier organic anion transporter family member 6A1 protein-coding gene gene with protein product Approved 5q21.1 05q21.1 "OATP6A1|OATPY|MGC26949|CT48" cancer/testis antigen 48 solute carrier organic anion transporter family, member 6A1 Solute carriers 752 2003-11-25 2015-11-18 2016-10-05 133482 ENSG00000205359 OTTHUMG00000162759 uc003knp.4 AF505657 NM_173488 "CCDS34206|CCDS75282|CCDS78042" Q86UG4 "MGI:1921691|MGI:1918116" RGD:620278 SLCO6A1 613365 SLCO6A1 objectId:1229 +HGNC:14535 SLEB3 systemic lupus erythematosus susceptibility 3 phenotype phenotype only Approved 4p16-p15.2 04p16-p15.2 2001-02-22 2006-01-24 64695 11078476 605480 +HGNC:17420 SLEH1 systemic lupus erythematosus with hemolytic anemia 1 phenotype phenotype only Approved 11q14 11q14 2002-02-13 2011-02-10 170682 607279 +HGNC:18542 SLEN1 systemic lupus erythematosus with nephritis 1 phenotype phenotype only Approved 10q22.3 10q22.3 2002-04-26 2002-12-13 192677 12215904 607965 +HGNC:18543 SLEN2 systemic lupus erythematosus with nephritis 2 phenotype phenotype only Approved 2q34-q35 02q34-q35 2002-04-26 2011-02-10 192679 12215904 607966 +HGNC:18544 SLEN3 systemic lupus erythematosus with nephritis 3 phenotype phenotype only Approved 11p15.6 11p15.6 2002-04-26 2011-02-10 282849 12215904 607967 +HGNC:25408 SLF1 SMC5-SMC6 complex localization factor 1 protein-coding gene gene with protein product Approved 5q15 05q15 "DKFZp761C121|DKFZp564C0469|BRCTx" "BRCTD1|ANKRD32" "BRCT domain containing 1|ankyrin repeat domain 32" Ankyrin repeat domain containing 403 2004-06-04 2015-07-10 2015-07-10 2015-07-10 84250 ENSG00000133302 OTTHUMG00000121133 AL136560 NM_032290 CCDS4071 Q9BQI6 "15632077|25931565" MGI:2145448 RGD:1304857 +HGNC:17814 SLF2 SMC5-SMC6 complex localization factor 2 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "FLJ10512|FLJ25012" "C10orf6|FAM178A" "chromosome 10 open reading frame 6|family with sequence similarity 178, member A" 2003-02-04 2015-07-10 2015-07-10 2015-09-02 55719 ENSG00000119906 OTTHUMG00000018919 AF460991 XM_005269965 "CCDS7500|CCDS44470|CCDS65918" Q8IX21 "12459258|25931565" MGI:1924968 RGD:1560300 610348 +HGNC:28286 SLFN5 schlafen family member 5 protein-coding gene gene with protein product Approved 17q12 17q12 MGC19764 Schlafen family 1110 2006-04-05 2014-11-19 162394 ENSG00000166750 OTTHUMG00000179858 uc002hjf.5 BX647942 NM_144975 "CCDS32619|CCDS82106" Q08AF3 9846487 MGI:1329004 RGD:1312025 SLFN5 614952 +HGNC:26633 SLFN11 schlafen family member 11 protein-coding gene gene with protein product Approved 17q12 17q12 FLJ34922 Schlafen family 1110 2006-04-05 2016-04-04 91607 ENSG00000172716 OTTHUMG00000132948 uc002hjh.5 AK074184 NM_152270 CCDS11294 Q7Z7L1 "12477932|23570387" RGD:1359139 SLFN11 614953 +HGNC:25500 SLFN12 schlafen family member 12 protein-coding gene gene with protein product Approved 17q12 17q12 FLJ10260 Schlafen family 1110 2006-04-05 2015-09-11 55106 ENSG00000172123 OTTHUMG00000132952 uc010cts.5 AK001122 NM_018042 CCDS11295 Q8IYM2 12477932 SLFN12 614955 +HGNC:33920 SLFN12L schlafen family member 12 like protein-coding gene gene with protein product Approved 17q12 17q12 schlafen family member 12-like Schlafen family 1110 2007-12-18 2016-04-04 2016-04-04 100506736 ENSG00000205045 OTTHUMG00000167707 uc021tuy.2 AK172761 XM_496206 CCDS56026 Q6IEE8 9846487 "MGI:1329005|MGI:1329010" RGD:1308645 SLFN12L 614956 +HGNC:26481 SLFN13 schlafen family member 13 protein-coding gene gene with protein product Approved 17q12 17q12 FLJ31952 Schlafen family 1110 2006-04-05 2015-09-11 146857 ENSG00000154760 OTTHUMG00000165108 uc002hjl.2 AL832726 NM_144682 CCDS32620 Q68D06 9846487 "MGI:2445121|MGI:2672859" SLFN13 614957 +HGNC:32689 SLFN14 schlafen family member 14 protein-coding gene gene with protein product Approved 17q12 17q12 Schlafen family 1110 2006-04-05 2015-09-08 342618 ENSG00000236320 OTTHUMG00000179912 uc010ctu.2 NM_001129820 CCDS45650 P0C7P3 9846487 MGI:2684866 RGD:1561538 SLFN14 614958 +HGNC:26313 SLFNL1 schlafen like 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 FLJ23878 schlafen-like 1 Schlafen family 1110 2006-04-05 2015-11-11 2015-11-11 200172 ENSG00000171790 OTTHUMG00000005719 uc057fhm.1 BC022037 NM_144990 "CCDS460|CCDS72766" Q499Z3 MGI:3045330 RGD:1564075 SLFNL1 +HGNC:44126 SLFNL1-AS1 SLFNL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p34.2 01p34.2 SLFNL1 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100507178 ENSG00000281207 OTTHUMG00000189531 uc021omd.1 AL157461 NR_037868 +HGNC:20495 SLIRP SRA stem-loop interacting RNA binding protein protein-coding gene gene with protein product Approved 14q24.3 14q24.3 DC50 C14orf156 chromosome 14 open reading frame 156 RNA binding motif containing 725 2004-06-11 2011-06-17 2011-06-17 2015-09-02 81892 ENSG00000119705 uc001xue.7 AF253980 NM_031210 "CCDS9866|CCDS58331|CCDS73668" Q9GZT3 16762838 MGI:1916394 RGD:1585290 SLIRP 610211 +HGNC:11085 SLIT1 slit guidance ligand 1 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "slit1|MEGF4|Slit-1|SLIT3" SLIL1 "slit (Drosophila) homolog 1|slit homolog 1 (Drosophila)" 1998-03-25 2015-06-26 2016-07-12 6585 ENSG00000187122 OTTHUMG00000018843 uc001kmw.3 AB011537 NM_003061 CCDS7453 O75093 "9693030|9813312" MGI:1315203 RGD:69307 SLIT1 603742 +HGNC:51198 SLIT1-AS1 SLIT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q24.1 10q24.1 2014-08-01 2014-08-01 100505540 ENSG00000234855 OTTHUMG00000018842 NR_038330 +HGNC:11086 SLIT2 slit guidance ligand 2 protein-coding gene gene with protein product Approved 4p15.31 04p15.31 Slit-2 SLIL3 "slit (Drosophila) homolog 2|slit homolog 2 (Drosophila)" 1999-06-11 2015-06-26 2016-10-05 9353 ENSG00000145147 OTTHUMG00000128551 uc003gpr.3 AF055585 XM_005248211 "CCDS3426|CCDS75110|CCDS75111" O94813 "9813312|18269211" MGI:1315205 RGD:69310 SLIT2 603746 +HGNC:41383 SLIT2-IT1 SLIT2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 4p15.31 04p15.31 SLIT2 intronic transcript 1 (non-protein coding) 2011-08-23 2015-02-25 2015-02-25 100505893 ENSG00000248228 OTTHUMG00000160239 uc003gpt.3 NR_037876 +HGNC:11087 SLIT3 slit guidance ligand 3 protein-coding gene gene with protein product Approved 5q34-q35.1 05q34-q35.1 "slit2|MEGF5|SLIT1|Slit-3" SLIL2 "slit (Drosophila) homolog 3|slit homolog 3 (Drosophila)" 1998-03-25 2015-06-26 2016-10-11 6586 ENSG00000184347 OTTHUMG00000130409 uc003mab.5 AB011538 NM_003062 "CCDS4369|CCDS64311" O75094 "9693030|9813312" MGI:1315202 RGD:69311 SLIT3 603745 +HGNC:20297 SLITRK1 SLIT and NTRK like family member 1 protein-coding gene gene with protein product Approved 13q31.1 13q31.1 KIAA1910 LRRC12 "leucine rich repeat containing 12|SLIT and NTRK-like family, member 1" 2004-01-08 2015-11-18 2015-11-18 114798 ENSG00000178235 OTTHUMG00000017149 uc001vlk.4 AB067497 NM_052910 CCDS9464 Q96PX8 "14557068|12975309" MGI:2679446 RGD:1308858 SLITRK1 609678 119716 +HGNC:13449 SLITRK2 SLIT and NTRK like family member 2 protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 "KIAA1854|CXorf2" SLITL1 "slit-like 1 (Drosophila)|SLIT and NTRK-like family, member 2" 2004-03-11 2015-11-18 2015-11-18 84631 ENSG00000185985 OTTHUMG00000022595 uc033eyj.2 Y19205 NM_032539 CCDS14680 Q9H156 "11347906|14557068" MGI:2679449 RGD:1561361 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLITRK2 SLITRK2 300561 +HGNC:23501 SLITRK3 SLIT and NTRK like family member 3 protein-coding gene gene with protein product Approved 3q26.1 03q26.1 KIAA0848 SLIT and NTRK-like family, member 3 2004-01-08 2015-11-18 2015-11-18 22865 ENSG00000121871 OTTHUMG00000158072 uc003fek.4 AB020655 NM_014926 CCDS3197 O94933 "10048485|14557068" MGI:2679447 RGD:1310506 SLITRK3 609679 +HGNC:23502 SLITRK4 SLIT and NTRK like family member 4 protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 DKFZp547M2010 SLIT and NTRK-like family, member 4 2004-01-08 2015-11-18 2015-11-18 139065 ENSG00000179542 OTTHUMG00000022580 uc022cfm.2 BC040986 NM_173078 CCDS14679 Q8IW52 14557068 MGI:2442509 RGD:1588563 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SLITRK4 SLITRK4 300562 +HGNC:20295 SLITRK5 SLIT and NTRK like family member 5 protein-coding gene gene with protein product Approved 13q31.2 13q31.2 "bA364G4.2|KIAA0918" LRRC11 "leucine rich repeat containing 11|SLIT and NTRK-like family, member 5" 2004-04-16 2015-11-18 2016-10-05 26050 ENSG00000165300 OTTHUMG00000017167 uc001vln.4 AB020725 XM_005254038 CCDS9465 O94991 "10048485|14557068" MGI:2679448 RGD:1310957 SLITRK5 609680 +HGNC:23503 SLITRK6 SLIT and NTRK like family member 6 protein-coding gene gene with protein product Approved 13q31.1 13q31.1 FLJ22774 SLIT and NTRK-like family, member 6 2004-01-08 2015-11-18 2015-11-18 84189 ENSG00000184564 OTTHUMG00000017157 uc001vll.2 AK026427 NM_032229 CCDS41903 Q9H5Y7 14557068 MGI:2443198 RGD:1306550 SLITRK6 609681 353699 +HGNC:11088 SLK STE20 like kinase protein-coding gene gene with protein product Approved 10q24.33-q25.1 10q24.33-q25.1 "STK2|se20-9|KIAA0204" "SNF1 (sucrose nonfermenting, yeast, homolog)-like kinase, SNF1 sucrose nonfermenting like kinase (yeast)|STE20-like kinase (yeast)|STE20-like kinase" 1992-04-16 2015-12-04 2016-10-11 9748 ENSG00000065613 OTTHUMG00000018999 uc001kxo.2 NM_014720 "CCDS7553|CCDS76334" Q9H2G2 3526554 MGI:103241 RGD:3780 SLK 616563 objectId:2200 +HGNC:16643 SLMAP sarcolemma associated protein protein-coding gene gene with protein product Approved 3p14.3 03p14.3 "SLAP|KIAA1601" Sarcolemmal-associated protein 2001-12-03 2016-10-05 7871 ENSG00000163681 OTTHUMG00000133764 uc062kya.1 AF100750 NM_007159 "CCDS33774|CCDS77757|CCDS77758|CCDS77759" Q14BN4 "9405447|11042152" MGI:1933549 RGD:1307674 SLMAP 602701 408692 +HGNC:11089 SLN sarcolipin protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "MGC12301|MGC125854|MGC125855" 1997-07-22 2014-11-18 6588 ENSG00000170290 OTTHUMG00000166364 uc058hag.1 U96094 NM_003063 CCDS31667 O00631 9367679 MGI:1913652 RGD:1305224 SLN 602203 +HGNC:11092 SLPI secretory leukocyte peptidase inhibitor protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "HUSI-I|ALK1|ALP|BLPI|HUSI|WAP4|WFDC4" antileukoproteinase secretory leukocyte protease inhibitor (antileukoproteinase) WAP four-disulfide core domain containing 361 1998-04-24 2005-08-17 2014-11-19 6590 ENSG00000124107 OTTHUMG00000033075 uc002xnm.2 X04502 NM_003064 CCDS13347 P03973 "3640338|12206714" MGI:109297 RGD:621768 SLPI 107285 LI17-001 +HGNC:20709 SLTM SAFB like transcription modulator protein-coding gene gene with protein product Approved 15q22.1 15q22.1 "Met|FLJ13213" RNA binding motif containing 725 2005-11-08 2016-01-13 2016-10-05 79811 ENSG00000137776 OTTHUMG00000074033 uc002afp.3 BC046119 NM_024755 CCDS10168 Q9NWH9 MGI:1913910 RGD:1307526 SLTM +HGNC:16939 SLU7 SLU7 homolog, splicing factor protein-coding gene gene with protein product Approved 5q33.3 05q33.3 9G8 SLU7 splicing factor homolog (S. cerevisiae) 2006-11-27 2015-07-30 2015-07-30 10569 ENSG00000164609 OTTHUMG00000130324 uc003lyg.4 AF101074 NM_006425 CCDS4352 O95391 "10197984|15728250" MGI:2385598 RGD:631432 SLU7 605974 +HGNC:18746 SLURP1 secreted LY6/PLAUR domain containing 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "ARS|ANUP|MDM|ArsB|LY6LS" "lymphocyte antigen 6-like secreted|ARS component B" LY6/PLAUR domain containing 1226 2004-11-16 2014-11-19 57152 ENSG00000126233 OTTHUMG00000164685 uc003ywy.3 AY579080 NM_020427 CCDS6387 P55000 "11285253|10211827" MGI:1930923 RGD:1308768 SLURP1 606119 119720 +HGNC:25549 SLURP2 secreted LY6/PLAUR domain containing 2 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 LY6/PLAUR domain containing 1226 2016-03-29 2016-03-29 AB081838 "12573258|26033490" +HGNC:20922 SLX1A SLX1 homolog A, structure-specific endonuclease subunit protein-coding gene gene with protein product Approved 16p11.2 16p11.2 GIYD1 "GIY-YIG domain containing 1|SLX1 structure-specific endonuclease subunit homolog A (S. cerevisiae)" 2005-05-05 2010-09-13 2015-07-31 2015-09-08 548593 ENSG00000132207 OTTHUMG00000176859 uc002dxg.4 NM_001014999 "CCDS32431|CCDS32432" Q9BQ83 "15358107|19595721" MGI:1915220 RGD:1311568 SLX1A 615822 +HGNC:44437 SLX1A-SULT1A3 SLX1A-SULT1A3 readthrough (NMD candidate) other readthrough Approved 16p11.2 16p11.2 SLX1A-SULT1A3 readthrough (non-protein coding) 2012-10-08 2013-05-09 2013-05-09 100526830 ENSG00000213599 OTTHUMG00000048084 uc059tcc.1 NR_037608 +HGNC:28748 SLX1B SLX1 homolog B, structure-specific endonuclease subunit protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC5178 GIYD2 "GIY-YIG domain containing 2|SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)" 2005-05-05 2010-09-13 2015-07-31 2015-08-26 79008 ENSG00000181625 OTTHUMG00000132110 uc002dsx.4 BC015990 NM_024044 "CCDS10648|CCDS10649" Q9BQ83 "15358107|19595721" MGI:1915220 SLX1B 615823 +HGNC:48353 SLX1B-SULT1A4 SLX1B-SULT1A4 readthrough (NMD candidate) other readthrough Approved 16p11.2 16p11.2 2013-05-10 2013-05-10 100526831 ENSG00000260280 OTTHUMG00000176758 NR_037609 +HGNC:23845 SLX4 SLX4 structure-specific endonuclease subunit protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "KIAA1784|KIAA1987|FANCP" Fanconi anemia, complementation group P BTBD12 "BTB (POZ) domain containing 12|SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)" "Fanconi anemia complementation groups|BTB domain containing" "548|861" 2003-12-15 2010-09-13 2013-06-05 2016-10-12 84464 ENSG00000188827 OTTHUMG00000074089 uc002cvp.3 AB058687 NM_032444 CCDS10506 Q8IY92 "11347906|19595721" MGI:106299 RGD:1566009 LRG_503|http://www.lrg-sequence.org/LRG/LRG_503 SLX4 613278 259354 +HGNC:16225 SLX4IP SLX4 interacting protein protein-coding gene gene with protein product Approved 20p12.2 20p12.2 dJ1099D15.3 C20orf94 chromosome 20 open reading frame 94 2001-07-17 2012-10-30 2012-10-30 2016-10-05 128710 ENSG00000149346 OTTHUMG00000031873 uc010zre.3 AL035456 NM_001009608 CCDS33439 Q5VYV7 19596235 MGI:1921493 RGD:1563120 615958 +HGNC:11095 SMA# entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:6767 SMAD1 SMAD family member 1 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "MADR1|JV4-1" MADH1 "MAD, mothers against decapentaplegic homolog 1 (Drosophila)|SMAD, mothers against DPP homolog 1 (Drosophila)" SMAD family 750 1996-11-15 2004-05-26 2006-11-06 2015-09-02 4086 ENSG00000170365 OTTHUMG00000161592 uc003ikc.4 U59423 NM_005900 CCDS3765 Q15797 "8653785|8673135" MGI:109452 RGD:3030 SMAD1 601595 +HGNC:49379 SMAD1-AS1 SMAD1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q31.21 04q31.21 ENST00000513542 2013-10-22 2013-10-23 104326058 ENSG00000250902 OTTHUMG00000162186 AW087665 NR_126371 24147006 +HGNC:49381 SMAD1-AS2 SMAD1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 4q31.21 04q31.21 2013-10-22 2013-10-22 101927659 ENSG00000250582 OTTHUMG00000162185 BC042377 NR_108077 +HGNC:6768 SMAD2 SMAD family member 2 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "MADR2|JV18-1" MADH2 "MAD, mothers against decapentaplegic homolog 2 (Drosophila)|SMAD, mothers against DPP homolog 2 (Drosophila)" SMAD family 750 1996-11-15 2004-05-26 2006-11-06 2016-10-05 4087 ENSG00000175387 OTTHUMG00000132652 uc002lcy.5 U65019 NM_005901 CCDS11934 Q15796 "8752209|8673135" MGI:108051 RGD:3031 SMAD2 601366 +HGNC:6769 SMAD3 SMAD family member 3 protein-coding gene gene with protein product Approved 15q22.33 15q22.33 "JV15-2|HsT17436" MADH3 "MAD, mothers against decapentaplegic homolog 3 (Drosophila)|SMAD, mothers against DPP homolog 3 (Drosophila)" SMAD family 750 1996-11-15 2004-05-26 2006-11-06 2016-10-05 4088 ENSG00000166949 OTTHUMG00000133230 uc002aqj.4 BC050743 NM_005902 "CCDS10222|CCDS45288|CCDS53950|CCDS53951" P84022 "8774881|8673135" MGI:1201674 RGD:3032 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=SMAD3 SMAD3 603109 260331 +HGNC:6770 SMAD4 SMAD family member 4 protein-coding gene gene with protein product Approved 18q21.2 18q21.2 DPC4 MADH4 "MAD, mothers against decapentaplegic homolog 4 (Drosophila)|SMAD, mothers against DPP homolog 4 (Drosophila)" SMAD family 750 1996-11-15 2004-05-26 2006-11-06 2016-10-12 4089 ENSG00000141646 OTTHUMG00000132696 uc060pfa.1 U44378 NM_005359 CCDS11950 Q13485 "8553070|8774881" MGI:894293 RGD:3033 LRG_318|http://www.lrg-sequence.org/LRG/LRG_318 SMAD4 600993 119727 +HGNC:6771 SMAD5 SMAD family member 5 protein-coding gene gene with protein product Approved 5q31 05q31 "Dwfc|JV5-1" MADH5 "MAD, mothers against decapentaplegic homolog 5 (Drosophila)|SMAD, mothers against DPP homolog 5 (Drosophila)" SMAD family 750 1997-07-01 2004-05-26 2006-11-06 2015-09-02 4090 ENSG00000113658 OTTHUMG00000163212 uc032vlx.1 U59913 NM_005903 CCDS75308 Q99717 8673135 MGI:1328787 RGD:620158 SMAD5 603110 +HGNC:30586 SMAD5-AS1 SMAD5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q31.1 05q31.1 DAMS SMAD5OS "SMAD family member 5 opposite strand|SMAD5 antisense RNA 1 (non-protein coding)" 2007-07-02 2011-04-13 2012-08-15 2014-11-18 9597 ENSG00000164621 OTTHUMG00000163216 uc003lbi.5 AF086556 NR_026763 Q9Y6J3 10049768 SMAD5-AS1 +HGNC:6772 SMAD6 SMAD family member 6 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 HsT17432 "MADH7|MADH6" "MAD, mothers against decapentaplegic homolog 6 (Drosophila)|SMAD, mothers against DPP homolog 6 (Drosophila)" SMAD family 750 1997-08-22 2004-05-26 2006-11-06 2015-08-26 4091 ENSG00000137834 OTTHUMG00000133218 uc002aqf.4 BC012986 NM_005585 CCDS10221 O43541 9256479 MGI:1336883 RGD:1305069 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=SMAD6 SMAD6 602931 310221 +HGNC:6773 SMAD7 SMAD family member 7 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "MADH8|MADH7" "MAD, mothers against decapentaplegic homolog 7 (Drosophila)|SMAD, mothers against DPP homolog 7 (Drosophila)" SMAD family 750 1997-08-22 2004-05-26 2006-11-06 2015-08-26 4092 ENSG00000101665 OTTHUMG00000132655 uc002ldg.3 AF010193 NM_005904 "CCDS11936|CCDS54186|CCDS59317" O15105 "9256479|9730599" MGI:1100518 RGD:69314 SMAD7 602932 +HGNC:6774 SMAD9 SMAD family member 9 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "SMAD8|SMAD8/9" "MADH6|MADH9" "MAD, mothers against decapentaplegic homolog 9 (Drosophila)|SMAD, mothers against DPP homolog 9 (Drosophila)" SMAD family 750 1997-07-25 2004-05-26 2006-11-06 2016-10-12 4093 ENSG00000120693 OTTHUMG00000016740 uc001uvw.3 NM_005905 "CCDS9360|CCDS45032" O15198 9205116 MGI:1859993 RGD:9309512 LRG_703|http://www.lrg-sequence.org/LRG/LRG_703 SMAD9 603295 189338 +HGNC:39963 SMAD9-IT1 SMAD9 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 SMAD9-AS1 "SMAD9 antisense RNA 1 (non-protein coding)|SMAD9 antisense RNA 1" 2011-04-18 2014-05-12 2014-05-12 2014-11-19 100874072 ENSG00000236711 OTTHUMG00000016743 +HGNC:26918 SMAGP small cell adhesion glycoprotein protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "MGC149453|MGC149454|hSMAGP" small trans-membrane and glycosylated protein 2009-09-21 2010-02-17 57228 ENSG00000170545 OTTHUMG00000185196 uc001rye.2 NM_020467 CCDS44889 Q0VAQ4 15021913 MGI:2448476 RGD:727777 SMAGP +HGNC:20975 SMAN1 survival of motor and autonomic neurons 1 phenotype phenotype only Approved 20q13.2-q13.3 20q13.2-q13.3 2005-06-30 2008-05-14 574013 15517093 +HGNC:19651 SMAP1 small ArfGAP 1 protein-coding gene gene with protein product Approved 6q13 06q13 "FLJ13159|SMAP-1" "stromal membrane-associated protein 1|stromal membrane-associated GTPase-activating protein 1" ArfGAPs 395 2003-05-22 2008-09-05 2016-10-05 60682 ENSG00000112305 OTTHUMG00000014996 uc003pfs.5 AK023221 NM_001044305 "CCDS4973|CCDS43478|CCDS64459|CCDS75478" Q8IYB5 "9644265|12119110" MGI:2138261 RGD:1585595 SMAP1 611372 +HGNC:25082 SMAP2 small ArfGAP2 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 SMAP1L "stromal membrane-associated protein 1-like|stromal membrane-associated GTPase-activating protein 2" ArfGAPs 395 2005-06-10 2008-01-09 2008-09-05 2016-10-05 64744 ENSG00000084070 OTTHUMG00000007301 uc001cfj.4 AL137764 NM_022733 "CCDS451|CCDS55592|CCDS55593|CCDS72763" Q8WU79 16571680 MGI:1917030 RGD:1308418 SMAP2 616916 +HGNC:11097 SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding gene gene with protein product Approved Xq25-q26.1 Xq25-q26.1 "SNF2LB|NURF140|ISWI|SWI|hSNF2L" "SNF2L1|SNF2L" Myb/SANT domain containing 532 1992-11-30 2016-10-11 6594 ENSG00000102038 OTTHUMG00000022370 uc011mul.3 M88163 NM_003069 "CCDS14612|CCDS76018|CCDS76019" P28370 "1408766|14609955" MGI:1935127 RGD:1561046 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SMARCA1 SMARCA1 300012 +HGNC:11098 SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 "BAF190|hSNF2a|hBRM|Sth1p|SNF2LA|BRM|SNF2|SWI2" SNF2L2 1994-07-22 2006-11-09 2016-10-12 6595 ENSG00000080503 OTTHUMG00000019445 uc064rwa.2 D26155 NM_003070 "CCDS34977|CCDS34978|CCDS75807|CCDS75808|CCDS83338|CCDS83339" P51531 8012116 MGI:99603 RGD:1302988 LRG_882|http://www.lrg-sequence.org/LRG/LRG_882 SMARCA2 600014 292297 objectId:2739 +HGNC:11100 SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "hSNF2b|BRG1|BAF190|SNF2|SWI2|SNF2-BETA|SNF2LB|FLJ39786" "SNF2-like 4|global transcription activator homologous sequence|sucrose nonfermenting-like 4|mitotic growth and transcription activator|BRM/SWI2-related gene 1|homeotic gene regulator|nuclear protein GRB1|brahma protein-like 1|ATP-dependent helicase SMARCA4" SNF2L4 1995-07-17 2006-11-09 2016-10-12 6597 ENSG00000127616 OTTHUMG00000169272 uc060tnr.1 D26156 NM_003072 "CCDS12253|CCDS45972|CCDS45973|CCDS54217|CCDS54218" P51532 8208605 MGI:88192 RGD:621728 LRG_878|http://www.lrg-sequence.org/LRG/LRG_878 SMARCA4 603254 225351 objectId:2740 +HGNC:11101 SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "hSNF2H|hISWI|ISWI" Myb/SANT domain containing 532 1998-10-01 2016-10-05 8467 ENSG00000153147 OTTHUMG00000161474 uc003ijg.4 AB010882 XR_001741338 CCDS3761 O60264 9730600 MGI:1935129 RGD:1308832 SMARCA5 603375 376910 +HGNC:39982 SMARCA5-AS1 SMARCA5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q31.21 04q31.21 SMARCA5 antisense RNA 1 (non-protein coding) 2011-04-20 2012-08-15 2014-11-19 100128055 ENSG00000245112 OTTHUMG00000161539 uc010iom.3 NR_104027 +HGNC:18398 SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding gene gene with protein product Approved 4q22.3 04q22.3 "ETL1|DKFZP762K2015|KIAA1122|DKFZp762K2015" 2003-05-29 2015-01-28 56916 ENSG00000163104 OTTHUMG00000130971 uc003htc.5 AB032948 NM_020159 "CCDS3639|CCDS47101|CCDS58914" Q9H4L7 11031099 MGI:95453 RGD:1309640 SMARCAD1 612761 289472 +HGNC:11102 SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding gene gene with protein product Approved 2q35 02q35 "HHARP|HARP" "HepA-related protein|ATP-driven annealing helicase" 2000-02-18 2016-05-10 2016-10-12 50485 ENSG00000138375 OTTHUMG00000133055 uc002vgc.5 AF210833 XM_017004228 CCDS2403 Q9NZC9 "10713074|10857751|18974355" MGI:1859183 RGD:1306134 "SMARCAL1base: Mutation registry for Schimke immuno-osseous dysplasia|http://structure.bmc.lu.se/idbase/SMARCAL1base/|LRG_108|http://www.lrg-sequence.org/LRG/LRG_108" SMARCAL1 606622 119731 +HGNC:11103 SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "BAF47|Ini1|Snr1|hSNFS|Sfh1p|RDT|PPP1R144" "sucrose nonfermenting, yeast, homolog-like 1|integrase interactor 1|malignant rhabdoid tumor suppressor|protein phosphatase 1, regulatory subunit 144" SNF5L1 Protein phosphatase 1 regulatory subunits 694 1995-08-21 2016-10-12 6598 ENSG00000099956 OTTHUMG00000150737 uc002zyb.4 U04847 NM_003073 "CCDS13817|CCDS46671|CCDS82699" Q12824 "7801128|10319872|10365963" MGI:1328366 RGD:1308761 LRG_520|http://www.lrg-sequence.org/LRG/LRG_520 SMARCB1 601607 119735 +HGNC:11104 SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "BAF155|SRG3|Rsc8|CRACC1" SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 Myb/SANT domain containing 532 1998-05-15 2016-04-04 2016-04-04 6599 ENSG00000173473 OTTHUMG00000133519 uc003crq.3 U66615 XR_001740239 CCDS2758 Q92922 8804307 MGI:1203524 RGD:1304850 SMARCC1 601732 +HGNC:11105 SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 "BAF170|Rsc8|CRACC2" SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 Myb/SANT domain containing 532 1998-05-15 2016-04-04 2016-04-04 6601 ENSG00000139613 OTTHUMG00000170288 uc001skb.4 U66616 XM_017019884 "CCDS8907|CCDS8908|CCDS55835|CCDS81698" Q8TAQ2 "8804307|9693044" MGI:1915344 RGD:1597704 SMARCC2 601734 +HGNC:11106 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "BAF60A|Rsc6p|CRACD1" 1998-05-15 2016-10-05 6602 ENSG00000066117 OTTHUMG00000150194 uc001rvx.5 U66617 NM_003076 "CCDS8797|CCDS8798" Q96GM5 "8804307|9693044|12917342" MGI:1933623 RGD:1305406 SMARCD1 601735 +HGNC:11107 SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "BAF60B|Rsc6p|CRACD2|PRO2451" "mammalian chromatin remodeling complex BRG1-associated factor 60B|Swp73-like protein|chromatin remodeling complex BAF60B subunit|SWI/SNF complex 60 kDa subunit B" 1998-05-15 2014-07-16 6603 ENSG00000108604 OTTHUMG00000179045 uc010deb.2 U66618 NM_001098426 "CCDS45756|CCDS82187|CCDS82188" Q92925 "8804307|9693044" MGI:1933621 RGD:69289 SMARCD2 601736 +HGNC:11108 SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "BAF60C|Rsc6p|CRACD3" "mammalian chromatin remodeling complex BRG1-associated factor 60C|Swp73-like protein|SWI/SNF complex 60 kDa subunit C|60kDa BRG-1/Brm associated factor subunit c" 1998-05-15 2016-10-05 6604 ENSG00000082014 OTTHUMG00000157431 uc003wjs.4 U66619 NM_001003801 "CCDS5924|CCDS34780" Q6STE5 "8804307|9693044" MGI:1914243 RGD:1311869 SMARCD3 601737 +HGNC:11109 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 BAF57 1998-05-15 2014-11-19 6605 ENSG00000073584 OTTHUMG00000133367 uc002hux.4 AF035262 NM_003079 CCDS11370 Q969G3 9435219 MGI:1927347 RGD:1304726 SMARCE1 603111 332111 +HGNC:39731 SMARCE1P1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 1 pseudogene pseudogene Approved 11q22.3 11q22.3 2011-03-24 2014-02-12 100271884 ENSG00000225215 OTTHUMG00000152976 NG_011597 +HGNC:39732 SMARCE1P2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 2 pseudogene pseudogene Approved 6q14.3 06q14.3 2011-03-24 2014-02-12 442233 ENSG00000226309 OTTHUMG00000015124 NG_011600 +HGNC:39733 SMARCE1P3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 3 pseudogene pseudogene Approved 14q11.2 14q11.2 2011-03-24 2014-08-07 401744 ENSG00000259102 OTTHUMG00000170754 NG_011599 PGOHUM00000292578 +HGNC:39735 SMARCE1P4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 4 pseudogene pseudogene Approved 8p11.23 08p11.23 2011-03-24 2014-02-12 642879 ENSG00000253650 OTTHUMG00000163983 NG_011598 +HGNC:39734 SMARCE1P5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 5 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-03-24 2014-02-12 400129 ENSG00000230793 OTTHUMG00000016836 NG_011330 +HGNC:39737 SMARCE1P6 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 6 pseudogene pseudogene Approved 2p23.3 02p23.3 2011-03-24 2011-03-24 2014-02-12 646196 ENSG00000214465 OTTHUMG00000151936 NG_028933 PGOHUM00000240603 +HGNC:51208 SMARCE1P7 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 7 pseudogene pseudogene Approved 10q24.31 10q24.31 2014-08-07 2014-08-07 106481716 ENSG00000270973 OTTHUMG00000184685 NG_043348 +HGNC:11111 SMC1A structural maintenance of chromosomes 1A protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "DXS423E|KIAA0178|SB1.8|Smcb" SMC1L1 "SMC1 (structural maintenance of chromosomes 1, yeast)-like 1|SMC1 structural maintenance of chromosomes 1-like 1 (yeast)" "Structural maintenance of chromosomes proteins|Cohesin complex" "761|1060" 2000-08-11 2006-07-06 2006-07-06 2016-10-12 8243 ENSG00000072501 OTTHUMG00000021614 uc004dsg.4 S78271 NM_006306 "CCDS14352|CCDS75985" Q14683 "7757074|17273969" MGI:1344345 RGD:61991 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SMC1A|LOVD|http://lsdb.hgu.mrc.ac.uk/home.php?select_db=SMC1A|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/CDLS/home.php?select_db=SMC1A|LRG_773|http://www.lrg-sequence.org/LRG/LRG_773" SMC1A 300040 119743 +HGNC:11112 SMC1B structural maintenance of chromosomes 1B protein-coding gene gene with protein product Approved 22q13.31 22q13.31 bK268H5 SMC1L2 "SMC1 (structural maintenance of chromosomes 1, yeast)-like 1|SMC1 structural maintenance of chromosomes 1-like 2 (yeast)" "Structural maintenance of chromosomes proteins|Cohesin complex" "761|1060" 2000-01-12 2006-07-06 2006-07-06 2016-10-05 27127 ENSG00000077935 OTTHUMG00000151334 uc003bgc.4 AJ504806 NM_148674 "CCDS43027|CCDS74876" Q8NDV3 "10591208|11564881" MGI:2154049 RGD:1308791 SMC1B 608685 +HGNC:14011 SMC2 structural maintenance of chromosomes 2 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "hCAP-E|CAP-E" SMC2L1 "SMC2 (structural maintenance of chromosomes 2, yeast)-like 1|SMC2 structural maintenance of chromosomes 2-like 1 (yeast)" Structural maintenance of chromosomes proteins 761 2001-02-22 2006-07-06 2006-07-06 2014-11-18 10592 ENSG00000136824 OTTHUMG00000020401 uc011lvl.3 AF092563 XM_006716933 CCDS35086 O95347 9789013 MGI:106067 RGD:1305227 SMC2 605576 +HGNC:50827 SMC2-AS1 SMC2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9q31.1 09q31.1 2014-06-25 2014-06-25 101928550 ENSG00000270332 OTTHUMG00000185235 NR_121580 +HGNC:2468 SMC3 structural maintenance of chromosomes 3 protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "HCAP|BAM|SMC3L1|bamacan" bamacan proteoglycan CSPG6 chondroitin sulfate proteoglycan 6 (bamacan) "Proteoglycans|Structural maintenance of chromosomes proteins|Cohesin complex" "570|761|1060" 1999-08-20 2006-07-06 2006-07-06 2016-10-12 9126 ENSG00000108055 OTTHUMG00000019042 uc001kze.4 AF020043 NM_005445 CCDS31285 Q9UQE7 "9506951|10358101|17273969" MGI:1339795 RGD:62006 "LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/CDLS/home.php?select_db=SMC3|LRG_774|http://www.lrg-sequence.org/LRG/LRG_774" SMC3 606062 138480 +HGNC:14013 SMC4 structural maintenance of chromosomes 4 protein-coding gene gene with protein product Approved 3q25.33 03q25.33 "hCAP-C|CAP-C" SMC4L1 "SMC4 (structural maintenance of chromosomes 4, yeast)-like 1|SMC4 structural maintenance of chromosomes 4-like 1 (yeast)" Structural maintenance of chromosomes proteins 761 2001-02-22 2006-07-06 2006-07-06 2016-10-05 10051 ENSG00000113810 OTTHUMG00000159006 uc003fdh.5 AF092564 XM_011512311 "CCDS3189|CCDS75046" Q9NTJ3 "9789013|10319587" MGI:1917349 RGD:1306680 SMC4 605575 +HGNC:51919 SMC4P1 structural maintenance of chromosomes 4 pseudogene 1 pseudogene pseudogene Approved 2q22.1 02q22.1 2015-10-06 2015-10-06 100421125 ENSG00000229568 OTTHUMG00000153586 NG_023732 PGOHUM00000298738 +HGNC:20465 SMC5 structural maintenance of chromosomes 5 protein-coding gene gene with protein product Approved 9q21.12 09q21.12 KIAA0594 SMC5L1 SMC5 structural maintenance of chromosomes 5-like 1 (yeast) "Structural maintenance of chromosomes proteins|SMC5-6 protein complex" "761|1034" 2003-02-17 2006-07-06 2006-07-06 2016-10-05 23137 ENSG00000198887 OTTHUMG00000019992 uc004ahr.3 AB011166 NM_015110 CCDS6632 Q8IY18 9628581 MGI:2385088 RGD:1307492 SMC5 609386 +HGNC:48718 SMC5-AS1 SMC5 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 9q21.12 09q21.12 MAMDC2-AS2 2013-06-07 2013-06-07 100507299 ENSG00000268364 OTTHUMG00000182521 NR_039990 +HGNC:20466 SMC6 structural maintenance of chromosomes 6 protein-coding gene gene with protein product Approved 2p24.2 02p24.2 FLJ22116 SMC6L1 SMC6 structural maintenance of chromosomes 6-like 1 (yeast) "Structural maintenance of chromosomes proteins|SMC5-6 protein complex" "761|1034" 2003-02-17 2006-07-06 2006-07-06 2016-10-05 79677 ENSG00000163029 OTTHUMG00000090675 uc010exo.4 AJ310551 NM_024624 CCDS1690 Q96SB8 11230166 MGI:1914491 RGD:1311214 SMC6 609387 +HGNC:29090 SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 KIAA0650 2005-03-22 2014-11-19 23347 ENSG00000101596 OTTHUMG00000178235 uc002klm.5 AB014550 XR_001753172 CCDS45822 A6NHR9 9734811 MGI:1921605 RGD:1307234 SMCHD1 614982 320176 +HGNC:27407 SMCO1 single-pass membrane protein with coiled-coil domains 1 protein-coding gene gene with protein product Approved 3q29 03q29 "FLJ41923|DKFZp313B0440" C3orf43 chromosome 3 open reading frame 43 2006-01-12 2013-03-08 2016-02-05 2016-02-05 255798 ENSG00000214097 OTTHUMG00000155581 uc003fws.4 AK123917 NM_001006109 CCDS43192 Q147U7 MGI:1916826 RGD:1562500 +HGNC:34448 SMCO2 single-pass membrane protein with coiled-coil domains 2 protein-coding gene gene with protein product Approved 12p11.23 12p11.23 LOC341346 C12orf70 chromosome 12 open reading frame 70 2008-07-25 2013-03-11 2016-02-05 2016-02-05 341346 ENSG00000165935 OTTHUMG00000169205 uc010sjq.2 NM_001145010 CCDS44852 A6NFE2 MGI:1916621 RGD:2320294 +HGNC:34401 SMCO3 single-pass membrane protein with coiled-coil domains 3 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 LOC440087 C12orf69 chromosome 12 open reading frame 69 2008-07-25 2013-03-11 2016-02-05 2016-02-05 440087 ENSG00000179256 OTTHUMG00000167474 uc001rck.1 NM_001013698 CCDS41759 A2RU48 MGI:2443451 +HGNC:24810 SMCO4 single-pass membrane protein with coiled-coil domains 4 protein-coding gene gene with protein product Approved 11q21 11q21 FN5 C11orf75 chromosome 11 open reading frame 75 2006-03-16 2013-03-11 2016-02-05 2016-02-05 56935 ENSG00000166002 OTTHUMG00000167442 uc001pds.5 BC031564 NM_020179 CCDS8292 Q9NRQ5 10863097 MGI:3039636 RGD:1309410 609477 +HGNC:49559 SMCO4P1 single-pass membrane protein with coiled-coil domains 4 pseudogene 1 pseudogene pseudogene Approved 17q21.31 17q21.31 2014-01-14 2016-02-05 2016-02-05 728675 ENSG00000267384 OTTHUMG00000181820 NG_029317 +HGNC:6962 SMCP sperm mitochondria associated cysteine rich protein protein-coding gene gene with protein product Approved 1q21.3 01q21.3 MCSP "mitochondrial capsule selenoprotein|sperm mitochondria-associated cysteine-rich protein" 1995-11-21 2005-10-06 2016-01-25 2016-01-25 4184 ENSG00000163206 OTTHUMG00000012452 uc001fat.4 BC014593 NM_030663 CCDS1029 P49901 8833144 MGI:96945 RGD:3069 SMCP 601148 +HGNC:17914 SMCR2 Smith-Magenis syndrome chromosome region, candidate 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 Smith-Magenis syndrome chromosome region, candidate 2 2002-01-09 2011-06-10 2015-04-08 105371564 ENSG00000223979 OTTHUMG00000059291 uc060bxl.1 AI821758 NR_131243 11997338 +HGNC:17915 SMCR3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-12 +HGNC:17917 SMCR4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:17918 SMCR5 Smith-Magenis syndrome chromosome region, candidate 5 (non-protein coding) non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 NCRNA00034 non-protein coding RNA 34 Smith-Magenis syndrome chromosome region, candidate 5 2002-01-09 2008-07-18 2012-10-16 140771 ENSG00000226746 OTTHUMG00000178769 uc010cpo.2 NR_024007 Q8TEV8 11997338 +HGNC:17919 SMCR6 Smith-Magenis syndrome chromosome region, candidate 6 (non-protein coding) non-coding RNA RNA, long non-coding Approved 17p11.2 17p11.2 Smith-Magenis syndrome chromosome region, candidate 6 2002-01-09 2014-06-12 2014-06-12 140772 "AJ230805|BF511382|W94594" 11997338 +HGNC:17921 SMCR8 Smith-Magenis syndrome chromosome region, candidate 8 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 FLJ34716 DENN/MADD domain containing 504 2002-01-09 2016-04-28 140775 ENSG00000176994 OTTHUMG00000059394 uc002gsy.5 AF467440 NM_144775 CCDS11195 Q8TEV9 "11997338|23248642|27103069" MGI:2444720 RGD:1564621 SMCR8 617074 +HGNC:17913 SMCR9 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-12 +HGNC:25055 SMDT1 single-pass membrane protein with aspartate rich tail 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "dJ186O1.1|DDDD|EMRE" essential MCU regulator C22orf32 chromosome 22 open reading frame 32 2006-07-06 2013-03-08 2016-06-06 2016-06-06 91689 ENSG00000183172 OTTHUMG00000151286 uc003bca.4 BC024237 NM_033318 CCDS14031 Q9H4I9 24231807 MGI:1916279 RGD:1311310 615588 +HGNC:30045 SMG1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "LIP|KIAA0421|ATX" phosphatidylinositol 3-kinase-related kinase "smg-1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)|SMG1 phosphatidylinositol 3-kinase-related kinase" 2008-12-18 2016-05-05 2016-05-05 23049 ENSG00000157106 OTTHUMG00000166900 uc002dfm.4 AB061371 NM_015092 CCDS45430 Q96Q15 "9455477|11331269|17229728" MGI:1919742 RGD:1563508 SMG1 607032 objectId:2201 2.7.11.1 +HGNC:44186 SMG1P1 SMG1P1, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 1 pseudogene pseudogene Approved 16p12.2 16p12.2 "smg-1 homolog, phosphatidylinositol 3-kinase-related kinase pseudogene 1|SMG1 pseudogene 1" 2012-06-30 2016-05-05 2016-05-05 641298 ENSG00000237296 OTTHUMG00000156797 NR_027154 PGOHUM00000267717 +HGNC:49859 SMG1P2 SMG1P2, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 SMG1 pseudogene 2 2014-03-18 2016-05-05 2016-05-05 440354 ENSG00000205534 OTTHUMG00000176759 NR_135305 PGOHUM00000267713 +HGNC:49860 SMG1P3 SMG1P3, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 3 pseudogene pseudogene Approved 16p12.2 16p12.2 SMG1 pseudogene 3 2014-03-18 2016-05-05 2016-05-05 100271836 ENSG00000180747 OTTHUMG00000164329 NR_027155 PGOHUM00000262279 +HGNC:49861 SMG1P4 SMG1P4, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 4 pseudogene pseudogene Approved 16p12.2 16p12.2 SMG1 pseudogene 4 2014-03-18 2016-05-05 2016-05-05 100507526 ENSG00000185710 OTTHUMG00000164330 NG_027945 PGOHUM00000267712 +HGNC:49862 SMG1P5 SMG1P5, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 5 pseudogene pseudogene Approved 16p11.2 16p11.2 SMG1 pseudogene 5 2014-03-18 2016-05-05 2016-05-05 595101 ENSG00000183604 OTTHUMG00000166915 NR_002453 PGOHUM00000267714 +HGNC:49863 SMG1P6 SMG1P6, nonsense mediated mRNA decay associated PI3K related kinasepseudogene 6 pseudogene pseudogene Approved 16p11.2 16p11.2 SMG1 pseudogene 6 2014-03-18 2016-05-05 2016-08-22 100422558 ENSG00000254634 OTTHUMG00000166914 NR_135312 PGOHUM00000262284 +HGNC:49864 SMG1P7 SMG1P7, nonsense mediated mRNA decay associated PI3K related kinase pseudogene 7 pseudogene pseudogene Approved 16q22.1 16q22.1 SMG1 pseudogene 7 2014-03-18 2016-05-05 2016-05-05 100506060 ENSG00000261556 OTTHUMG00000177041 NR_033959 PGOHUM00000262300 +HGNC:24644 SMG5 SMG5, nonsense mediated mRNA decay factor protein-coding gene gene with protein product Approved 1q22 01q22 "KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5|EST1B" EST1 telomerase component homolog B (S. cerevisiae) smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans) 2006-02-16 2016-05-05 2016-10-05 23381 ENSG00000198952 OTTHUMG00000017491 uc001foc.5 AB029012 NM_015327 CCDS1137 Q9UPR3 "12676087|12699629" MGI:2447364 RGD:1584731 SMG5 610962 +HGNC:17809 SMG6 SMG6, nonsense mediated mRNA decay factor protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "KIAA0732|SMG-6|EST1A" EST1 telomerase component homolog A (S. cerevisiae) C17orf31 "chromosome 17 open reading frame 31|smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)|SMG6 nonsense mediated mRNA decay factor" 2001-12-19 2006-02-16 2016-05-05 2016-05-05 23293 ENSG00000070366 OTTHUMG00000177578 uc002fub.2 AB018275 XM_005256569 "CCDS11016|CCDS58498" Q86US8 "12676087|12699629" MGI:2144117 RGD:1595918 SMG6 610963 +HGNC:1220 SMG6-IT1 SMG6 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 17p13.3 17p13.3 C17orf6 "chromosome 17 open reading frame 6|SMG6 intronic transcript 1 (non-protein coding)" 2000-05-05 2012-08-15 2015-02-25 2015-02-25 53400 ENSG00000278941 OTTHUMG00000177860 uc002fuc.1 AJ276246 +HGNC:16792 SMG7 SMG7, nonsense mediated mRNA decay factor protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "KIAA0250|EST1C|SGA56M|SMG-7" EST1 telomerase component homolog C (S. cerevisiae) C1orf16 "chromosome 1 open reading frame 16|smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)" 2001-10-08 2006-02-16 2016-05-05 2016-10-05 9887 ENSG00000116698 OTTHUMG00000035221 uc001gqg.4 D87437 NM_014837 "CCDS1355|CCDS41445|CCDS53444|CCDS53445|CCDS81410" Q92540 "14636577|15721257" MGI:2682334 RGD:1310761 SMG7 610964 +HGNC:24518 SMG7-AS1 SMG7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q25.3 01q25.3 DKFZP564C196 SMG7 antisense RNA 1 (non-protein coding) 2012-08-01 2012-08-15 2014-11-19 284649 ENSG00000232860 OTTHUMG00000035521 uc001gqe.4 BC032873 NR_040063 12477932 +HGNC:25551 SMG8 SMG8, nonsense mediated mRNA decay factor protein-coding gene gene with protein product Approved 17q23.2 17q23.2 "FLJ10587|FLJ23205" C17orf71 "chromosome 17 open reading frame 71|smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)" 2005-12-19 2011-06-21 2016-05-05 2016-05-05 55181 ENSG00000167447 OTTHUMG00000179365 uc060ibx.1 AL834490 NM_018149 CCDS11615 Q8ND04 19417104 MGI:1921383 RGD:1306862 SMG8 613175 +HGNC:25763 SMG9 SMG9, nonsense mediated mRNA decay factor protein-coding gene gene with protein product Approved 19q13.31 19q13.31 FLJ12886 C19orf61 "chromosome 19 open reading frame 61|smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)" 2007-04-12 2011-06-21 2016-05-05 2016-05-05 56006 ENSG00000105771 OTTHUMG00000150337 uc002oxj.3 BC008869 NM_019108 CCDS33043 Q9H0W8 "11230166|19417104" MGI:1919247 RGD:1309888 SMG9 613176 +HGNC:44204 SMIM1 small integral membrane protein 1 (Vel blood group) protein-coding gene gene with protein product Approved 1p36.32 01p36.32 Vel small integral membrane protein 1 Blood group antigens 454 2012-07-05 2014-01-02 2016-10-12 388588 ENSG00000235169 OTTHUMG00000003505 uc001akw.6 NM_001163724 CCDS57966 B2RUZ4 "23505126|23563606|23563608" MGI:1916109 RGD:1564257 LRG_827|http://www.lrg-sequence.org/LRG/LRG_827 615242 +HGNC:28776 SMIM2 small integral membrane protein 2 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 MGC5590 C13orf44 chromosome 13 open reading frame 44 2011-08-15 2012-07-11 2012-07-11 2014-11-18 79024 ENSG00000139656 OTTHUMG00000016831 uc001uzh.3 BC000868 NM_024058 CCDS61320 Q9BVW6 12477932 RGD:9251176 SMIM2 +HGNC:42674 SMIM2-AS1 SMIM2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 C13orf44-AS1 "C13orf44 antisense RNA 1 (non-protein coding)|SMIM2 antisense RNA 1 (non-protein coding)" 2011-08-15 2012-07-11 2012-08-15 2014-11-18 101929212 ENSG00000227258 OTTHUMG00000016829 uc058wsl.1 NR_104064 +HGNC:41492 SMIM2-IT1 SMIM2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 C13orf44-IT1 "C13orf44 intronic transcript 1 (non-protein coding)|SMIM2 intronic transcript 1 (non-protein coding)" 2011-08-15 2012-07-11 2015-02-25 2015-02-25 100874377 ENSG00000235285 OTTHUMG00000016830 uc031qlj.1 AI476676 NR_046843 +HGNC:30248 SMIM3 small integral membrane protein 3 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "MSTP150|NID67" C5orf62 chromosome 5 open reading frame 62 2009-10-02 2012-10-01 2012-10-01 2016-04-25 85027 ENSG00000256235 OTTHUMG00000163646 uc003lsw.4 AF313413 NM_032947 CCDS47312 Q9BZL3 11288140 MGI:1917088 RGD:628864 SMIM3 608324 +HGNC:37257 SMIM4 small integral membrane protein 4 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 C3orf78 chromosome 3 open reading frame 78 2010-06-04 2012-10-08 2012-10-08 2015-08-26 440957 ENSG00000168273 OTTHUMG00000158726 uc003dep.3 AK095910 NM_001124767 CCDS46844 Q8WVI0 MGI:1913737 RGD:1307583 +HGNC:40030 SMIM5 small integral membrane protein 5 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 C17orf109 chromosome 17 open reading frame 109 2011-05-13 2012-10-23 2012-10-23 2014-01-02 643008 ENSG00000204323 OTTHUMG00000167882 uc002jow.3 NM_001162995 CCDS54165 Q71RC9 24318988 MGI:1913778 RGD:1586374 +HGNC:40032 SMIM6 small integral membrane protein 6 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 C17orf110 chromosome 17 open reading frame 110 2011-06-21 2012-10-23 2012-10-23 2012-10-23 100130933 ENSG00000259120 OTTHUMG00000179796 uc060kah.1 NM_001162997 CCDS54166 P0DI80 MGI:1915778 RGD:7720946 SMIM6 +HGNC:28419 SMIM7 small integral membrane protein 7 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 MGC2747 C19orf42 chromosome 19 open reading frame 42 2006-04-04 2012-10-26 2012-10-26 2015-08-26 79086 ENSG00000214046 OTTHUMG00000149895 uc002ner.4 AK025602 NM_024104 "CCDS12348|CCDS74307" Q9BQ49 12477932 MGI:1914068 RGD:1588793 +HGNC:21401 SMIM8 small integral membrane protein 8 protein-coding gene gene with protein product Approved 6q15 06q15 "DKFZP586E1923|dJ102H19.2" C6orf162 chromosome 6 open reading frame 162 2003-06-12 2012-11-20 2012-11-20 2014-11-19 57150 ENSG00000111850 OTTHUMG00000015168 uc003plp.2 AL050201 NM_020425 "CCDS34496|CCDS75493" Q96KF7 MGI:1913541 +HGNC:41915 SMIM9 small integral membrane protein 9 protein-coding gene gene with protein product Approved Xq28 Xq28 CXorf68 chromosome X open reading frame 68 2011-08-04 2012-11-29 2012-11-29 2012-11-29 100132963 ENSG00000203870 OTTHUMG00000024243 uc065cja.1 NM_001162936 CCDS55546 A6NGZ8 MGI:3588243 +HGNC:41913 SMIM10 small integral membrane protein 10 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 CXorf69 chromosome X open reading frame 69 2011-08-15 2012-11-29 2012-11-29 2015-09-08 644538 ENSG00000184785 OTTHUMG00000187484 uc011mvs.2 NM_001163438 CCDS55502 Q96HG1 RGD:1585506 +HGNC:49847 SMIM10L1 small integral membrane protein 10 like 1 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 2015-03-06 2015-03-06 2015-03-06 100129361 ENSG00000256537 OTTHUMG00000168565 NM_001271592 CCDS81667 P0DMW3 MGI:1914379 RGD:2322729 PGOHUM00000262876 +HGNC:34499 SMIM10L2A small integral membrane protein 10 like 2A protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "MGC39606|LED" lncRNA activator of enhancer domains "NCRNA00086|LINC00086" "non-protein coding RNA 86|long intergenic non-protein coding RNA 86" 2008-09-02 2015-03-06 2015-03-06 2015-04-10 399668 ENSG00000178947 OTTHUMG00000022479 "BC030620|BC051704" NR_024359 P0DMW4 25813522 MGI:2443645 +HGNC:34500 SMIM10L2B small integral membrane protein 10 like 2B protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 RP11-85L21.2 "NCRNA00087|LINC00087" "non-protein coding RNA 87|long intergenic non-protein coding RNA 87" 2008-09-03 2015-03-06 2015-03-06 2015-09-08 644596 ENSG00000196972 OTTHUMG00000022468 NR_024493 P0DMW5 +HGNC:1293 SMIM11A small integral membrane protein 11A protein-coding gene gene with protein product Approved 21q22.11-q22.12 21q22.11-q22.12 "C21orf51|FAM165B|SMIM11" "chromosome 21 open reading frame 51|family with sequence similarity 165, member B|small integral membrane protein 11" 2000-05-23 2015-08-21 2015-08-21 2016-10-11 54065 ENSG00000205670 OTTHUMG00000086193 BC015596 NM_058182 CCDS33550 P58511 MGI:1916186 RGD:2299853 +HGNC:51846 SMIM11B small integral membrane protein 11B protein-coding gene gene with protein product Approved 21p11.2 21p11.2 2015-08-21 2015-08-21 102723553 ENSG00000273590 OTTHUMG00000189412 XM_017028203 CCDS82653 Q8TCY0 +HGNC:21400 SMIM11P1 small integral membrane protein 11 pseudogene 1 pseudogene pseudogene Approved 6q14.3 06q14.3 bA33E24.4 "C6orf161|FAM165A" "chromosome 6 open reading frame 161|family with sequence similarity 165, member A" 2003-11-26 2012-12-03 2012-12-03 2012-12-03 100127905 ENSG00000198738 OTTHUMG00000015146 NG_012759 +HGNC:25154 SMIM12 small integral membrane protein 12 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 FLJ90372 C1orf212 chromosome 1 open reading frame 212 2006-08-17 2012-12-03 2012-12-03 2015-08-26 113444 ENSG00000163866 OTTHUMG00000004375 uc001byb.4 NM_138428 CCDS53295 Q96EX1 12477932 MGI:1933141 RGD:1591379 +HGNC:41084 SMIM12-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:51598 SMIM12P1 small integral membrane protein 12 pseudogene 1 pseudogene pseudogene Approved 2q12.3 02q12.3 2015-03-12 2015-03-17 100288503 ENSG00000271284 OTTHUMG00000184263 NG_012910 PGOHUM00000298618 +HGNC:27356 SMIM13 small integral membrane protein 13 protein-coding gene gene with protein product Approved 6p24.2 06p24.2 C6orf228 chromosome 6 open reading frame 228 2011-09-27 2012-12-03 2012-12-03 2012-12-03 221710 ENSG00000224531 OTTHUMG00000014253 uc011dio.3 NM_001135575 CCDS56396 P0DJ93 MGI:2652854 RGD:1591023 +HGNC:27321 SMIM14 small integral membrane protein 14 protein-coding gene gene with protein product Approved 4p14 04p14 FLJ13289 C4orf34 chromosome 4 open reading frame 34 2006-08-21 2012-12-03 2012-12-03 2014-11-18 201895 ENSG00000163683 OTTHUMG00000128581 uc003guo.4 BC008502 NM_174921 CCDS3456 Q96QK8 "15231747|24499674|23759569" MGI:1915802 RGD:1311122 +HGNC:33861 SMIM15 small integral membrane protein 15 protein-coding gene gene with protein product Approved 5q12.1 05q12.1 DKFZP686E2158 C5orf43 chromosome 5 open reading frame 43 2008-06-13 2012-12-03 2012-12-03 2016-10-05 643155 ENSG00000188725 OTTHUMG00000162241 uc010iwm.2 NM_001048249 CCDS34165 Q7Z3B0 MGI:1922866 RGD:2324600 +HGNC:27114 SMIM17 small integral membrane protein 17 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 2012-12-11 2015-09-02 147670 ENSG00000268182 OTTHUMG00000177861 uc021vch.2 AK095199 NM_001193628 CCDS58683 P0DL12 MGI:4365374 RGD:1559613 SMIM17 +HGNC:42973 SMIM18 small integral membrane protein 18 protein-coding gene gene with protein product Approved 8p12 08p12 2012-12-12 2015-08-26 100507341 ENSG00000253457 OTTHUMG00000163839 uc022atn.2 NM_001206847 CCDS56529 P0DKX4 MGI:1919882 RGD:6501537 +HGNC:25166 SMIM19 small integral membrane protein 19 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 C8orf40 chromosome 8 open reading frame 40 2005-07-27 2013-03-08 2013-03-08 2014-11-19 114926 ENSG00000176209 OTTHUMG00000157060 uc011lcv.3 BC013035 NM_138436 CCDS6133 Q96E16 12477932 MGI:2142501 RGD:2318364 +HGNC:37260 SMIM20 small integral membrane protein 20 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 C4orf52 chromosome 4 open reading frame 52 2009-09-15 2013-03-08 2013-03-08 2013-03-08 389203 ENSG00000250317 OTTHUMG00000160330 uc003grw.5 NM_001145432 CCDS47038 Q8N5G0 MGI:1913528 RGD:1565192 +HGNC:27598 SMIM21 small integral membrane protein 21 protein-coding gene gene with protein product Approved 18q23 18q23 C18orf62 chromosome 18 open reading frame 62 2007-11-19 2013-03-11 2013-03-11 2014-11-19 284274 ENSG00000206026 OTTHUMG00000179126 uc002lma.2 NM_001037331 "CCDS32845|CCDS77200" Q3B7S5 +HGNC:48329 SMIM22 small integral membrane protein 22 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 2013-06-21 2013-06-21 2014-02-12 440335 ENSG00000267795 OTTHUMG00000177849 XM_011522499 "CCDS59258|CCDS59259" K7EJ46 MGI:3643379 RGD:1563547 +HGNC:34440 SMIM23 small integral membrane protein 23 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 LOC644994 C5orf50 chromosome 5 open reading frame 50 2008-07-14 2013-12-13 2013-12-13 2013-12-13 644994 ENSG00000185662 OTTHUMG00000163266 XM_011534623 A6NLE4 23028347 MGI:1916601 RGD:1306625 +HGNC:37244 SMIM24 small integral membrane protein 24 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 HSPC323 C19orf77 chromosome 19 open reading frame 77 2009-09-30 2014-02-21 2014-02-21 2014-02-21 284422 ENSG00000095932 OTTHUMG00000180761 AF161441 NM_001136503 CCDS45915 O75264 MGI:1919523 RGD:2324237 +HGNC:43561 SMKR1 small lysine rich protein 1 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 2012-12-11 2016-06-06 2016-06-06 100287482 ENSG00000240204 OTTHUMG00000157696 uc003voy.3 "BC035417|BC050400" NM_001195243 CCDS59077 H3BMG3 RGD:9298384 +HGNC:44670 SMLR1 small leucine rich protein 1 protein-coding gene gene with protein product Approved 6q23.1 06q23.1 2012-12-12 2016-06-06 2016-06-06 100507203 ENSG00000256162 OTTHUMG00000176259 uc011ebx.3 AK091900 NM_001195597 CCDS59036 H3BR10 MGI:1922856 RGD:1586664 +HGNC:11117 SMN1 survival of motor neuron 1, telomeric protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "BCD541|SMNT|SMA1|SMA2|SMA3|GEMIN1|TDRD16A" "gemin-1|tudor domain containing 16A" "SMA@|SMA" spinal muscular atrophy (Werdnig-Hoffmann disease, Kugelberg-Welander disease) Tudor domain containing 780 1996-12-12 2016-10-12 6606 ENSG00000172062 OTTHUMG00000099361 uc003kak.4 U18423 NM_000344 "CCDS34181|CCDS34182|CCDS75256" Q16637 7813012 MGI:109257 RGD:620755 "SMN1 - Spinal Muscular Atrophy (SMA)|http://www.LOVD.nl/SMN1|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SMN1|ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_676|http://www.lrg-sequence.org/LRG/LRG_676" SMN1 600354 133452 +HGNC:11118 SMN2 survival of motor neuron 2, centromeric protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "BCD541|SMNC|GEMIN1|TDRD16B" tudor domain containing 16B Tudor domain containing 780 1996-12-12 2016-10-12 6607 ENSG00000205571 OTTHUMG00000099389 uc003jyd.4 NM_017411 "CCDS4007|CCDS4008|CCDS54867" Q16637 7813012 MGI:109257 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_677|http://www.lrg-sequence.org/LRG/LRG_677" SMN2 601627 119750 +HGNC:16900 SMNDC1 survival motor neuron domain containing 1 protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "SPF30|SMNR|TDRD16C" "splicing factor 30, survival of motor neuron-related|tudor domain containing 16C" Tudor domain containing 780 2003-11-06 2016-10-05 10285 ENSG00000119953 OTTHUMG00000019036 uc001kzc.5 AF083385 NM_005871 CCDS7565 O75940 "9731529|9817934" MGI:1923729 RGD:1309151 SMNDC1 603519 +HGNC:11119 SMO smoothened, frizzled class receptor protein-coding gene gene with protein product Approved 7q32.1 07q32.1 FZD11 frizzled family member 11 SMOH "smoothened (Drosophila) homolog|smoothened homolog (Drosophila)|smoothened, seven transmembrane spanning receptor|smoothened, frizzled family receptor" G protein-coupled receptors, Class F frizzled 286 1996-12-18 2003-01-17 2014-01-29 2014-11-18 6608 ENSG00000128602 OTTHUMG00000158421 uc003vor.4 U84401 NM_005631 CCDS5811 Q99835 9628830 MGI:108075 RGD:3726 SMO 601500 461367 objectId:239 +HGNC:20318 SMOC1 SPARC related modular calcium binding 1 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 SPARC family 1278 2003-01-24 2010-08-05 64093 ENSG00000198732 OTTHUMG00000171237 uc001xls.3 AJ249900 NM_001034852 "CCDS9798|CCDS32110" Q9H4F8 12130637 MGI:1929878 RGD:1303126 SMOC1 608488 258631 +HGNC:20323 SMOC2 SPARC related modular calcium binding 2 protein-coding gene gene with protein product Approved 6q27 06q27 SMAP2 SPARC family 1278 2003-01-24 2015-09-02 64094 ENSG00000112562 OTTHUMG00000016050 uc003qwr.2 AB014730 NM_022138 "CCDS5307|CCDS55076" Q9H3U7 12031507 MGI:1929881 RGD:1306681 SMOC2 607223 303024 +HGNC:15862 SMOX spermine oxidase protein-coding gene gene with protein product Approved 20p13 20p13 "FLJ20746|dJ779E11.1|PAO|PAOh1|MGC1010|SMO" C20orf16 chromosome 20 open reading frame 16 2001-06-21 2003-10-15 2003-10-15 2015-12-17 54498 ENSG00000088826 OTTHUMG00000031777 uc002wkm.2 AK000753 NM_175842 "CCDS13075|CCDS13076|CCDS13077|CCDS13078|CCDS74702" Q9NWM0 "11454677|12398765" MGI:2445356 RGD:1306049 SMOX 615854 1.5.3.16 +HGNC:11120 SMPD1 sphingomyelin phosphodiesterase 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 ASM acid sphingomyelinase sphingomyelin phosphodiesterase 1, acid lysosomal 1986-01-01 2015-12-10 2016-10-05 6609 ENSG00000166311 OTTHUMG00000165453 uc009yew.4 AB209775 NM_000543 "CCDS31409|CCDS44531" P17405 1711683 MGI:98325 RGD:1549719 SMPD1 607608 119754 objectId:2514 3.1.4.12 +HGNC:11121 SMPD2 sphingomyelin phosphodiesterase 2 protein-coding gene gene with protein product Approved 6q21 06q21 "nSMase|ISC1" neutral sphingomyelinase sphingomyelin phosphodiesterase 2, neutral membrane (neutral sphingomyelinase) 1998-06-22 2015-12-10 2015-12-10 6610 ENSG00000135587 OTTHUMG00000015348 uc003pti.4 AJ222801 XM_005267109 CCDS5075 O60906 9520418 MGI:1278330 RGD:619753 SMPD2 603498 objectId:2515 3.1.4.12 +HGNC:14240 SMPD3 sphingomyelin phosphodiesterase 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 NSMASE2 neutral sphingomyelinase II sphingomyelin phosphodiesterase 3, neutral membrane (neutral sphingomyelinase II) 2000-12-12 2015-12-10 2015-12-10 55512 ENSG00000103056 OTTHUMG00000137559 uc002ewa.4 AJ250460 NM_018667 CCDS10867 Q9NY59 10823942 MGI:1927578 RGD:619754 SMPD3 605777 objectId:2516 +HGNC:32949 SMPD4 sphingomyelin phosphodiesterase 4 protein-coding gene gene with protein product Approved 2q21.1 02q21.1 "FLJ20297|FLJ20756|nSMase-3|KIAA1418|NSMASE3|NET13" neutral sphingomyelinase-3 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) 2006-07-12 2015-12-10 2015-12-10 55627 ENSG00000136699 OTTHUMG00000131624 uc002tqq.3 AF052134 NM_017751 "CCDS2156|CCDS42751|CCDS54398" Q9NXE4 16517606 MGI:1924876 RGD:1310674 SMPD4 610457 objectId:2517 +HGNC:39673 SMPD4P1 sphingomyelin phosphodiesterase 4 pseudogene 1 pseudogene pseudogene Approved 22q11.21 22q11.21 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 1 2011-03-22 2015-12-10 2015-12-10 645280 ENSG00000223553 OTTHUMG00000030245 NG_028286 PGOHUM00000246243 +HGNC:39674 SMPD4P2 sphingomyelin phosphodiesterase 4 pseudogene 2 pseudogene pseudogene Approved 13q12.11 13q12.11 sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene 2 2011-03-22 2015-12-10 2015-12-10 441654 ENSG00000229147 OTTHUMG00000016483 NG_011395 PGOHUM00000248303 +HGNC:52275 SMPD5 sphingomyelin phosphodiesterase 5 other unknown Approved 8q24.3 08q24.3 MA-nSMase mitochondria-associated nSMase 2015-12-10 2015-12-10 392275 ENSG00000204791 OTTHUMG00000165434 XM_017014128 23579449 MGI:3709877 RGD:2323312 PGOHUM00000303698 +HGNC:17389 SMPDL3A sphingomyelin phosphodiesterase acid like 3A protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "FLJ20177|ASM3A|ASML3a|yR36GH4.1" acid sphingomyelinase-like phosphodiesterase 3a sphingomyelin phosphodiesterase acid-like 3A 2003-11-26 2016-01-25 2016-10-05 10924 ENSG00000172594 OTTHUMG00000015490 uc003pzg.5 AK000184 NM_006714 "CCDS5128|CCDS69190" Q92484 "12442002|25288789" MGI:1931437 RGD:1359277 SMPDL3A 610728 objectId:2518 +HGNC:21416 SMPDL3B sphingomyelin phosphodiesterase acid like 3B protein-coding gene gene with protein product Approved 1p35.3 01p35.3 ASML3B "sphingomyelin phosphodiesterase, acid-like 3B|sphingomyelin phosphodiesterase acid-like 3B" 2004-04-20 2016-01-25 2016-01-25 27293 ENSG00000130768 OTTHUMG00000003910 uc001bpg.4 Y08134 NM_014474 "CCDS30655|CCDS30656" Q92485 26095358 MGI:1916022 RGD:1307458 SMPDL3B objectId:2519 +HGNC:11122 SMPX small muscle protein, X-linked protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 DFNX4 DFN6 deafness, X-linked 6, sensorineural 1999-03-18 2016-10-05 23676 ENSG00000091482 OTTHUMG00000021235 uc004daa.4 NM_014332 CCDS14200 Q9UHP9 21893181 MGI:1913356 RGD:69233 SMPX 300226 268803 +HGNC:19216 SMR3A submaxillary gland androgen regulated protein 3A protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "PBI|PRL5" PROL5 "proline rich 5 (salivary)|submaxillary gland androgen regulated protein 3 homolog A (mouse)" 2002-09-12 2005-02-07 2008-02-27 2014-11-18 26952 ENSG00000109208 OTTHUMG00000160839 uc003hfg.2 D89501 NM_012390 CCDS34000 Q99954 "9354371|17512016" MGI:102763 RGD:1563299 SMR3A +HGNC:17326 SMR3B submaxillary gland androgen regulated protein 3B protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "P-B|PRL3" PROL3 "proline rich 3|submaxillary gland androgen regulated protein 3 homolog B (mouse)" 2002-01-03 2005-02-07 2008-02-27 2014-11-19 10879 ENSG00000171201 OTTHUMG00000129396 uc062xco.1 D29833 NM_006685 CCDS3540 P02814 "7982889|479131" RGD:3953 SMR3B 611593 +HGNC:11123 SMS spermine synthase protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "SPMSY|SpS|MRSR" SRS Snyder-Robinson X-linked mental retardation syndrome 1997-11-07 2016-10-05 6611 ENSG00000102172 OTTHUMG00000021239 uc004dag.5 AD001528 NM_004595 "CCDS14203|CCDS59161" P52788 "7546290|9299240|14508504" MGI:109490 RGD:1564826 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SMS SMS 300105 138543 +HGNC:11126 SMTN smoothelin protein-coding gene gene with protein product Approved 22q12.2 22q12.2 1997-02-03 2016-10-05 6525 ENSG00000183963 OTTHUMG00000151203 uc011ale.3 AY061972 NM_134270 "CCDS13886|CCDS13887|CCDS13888|CCDS74845|CCDS74846" P53814 "9244445|8707825" MGI:1354727 RGD:1310216 SMTN 602127 +HGNC:32394 SMTNL1 smoothelin like 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 CHASM calponin homology-associated smooth muscle protein 2006-02-02 2016-06-03 2016-06-03 219537 ENSG00000214872 OTTHUMG00000167046 uc021qjh.1 BX116227 XM_166203 CCDS44599 A8MU46 15327999 MGI:1915928 RGD:1311701 SMTNL1 613664 +HGNC:24764 SMTNL2 smoothelin like 2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 FLJ42461 smoothelin-like 2 2006-04-26 2016-04-04 2016-04-04 342527 ENSG00000188176 OTTHUMG00000132938 uc002fye.3 AK124452 NM_198501 "CCDS11048|CCDS45583" Q2TAL5 MGI:2442764 RGD:1585960 SMTNL2 +HGNC:18247 SMU1 DNA replication regulator and spliceosomal factor protein-coding gene gene with protein product Approved 9p21.1 09p21.1 "SMU-1|FLJ10805|BWD|fSAP57" functional spliceosome-associated protein 57 smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) WD repeat domain containing 362 2004-05-17 2016-05-19 2016-10-05 55234 ENSG00000122692 OTTHUMG00000019757 uc003zsf.2 AK001667 NM_018225 CCDS6534 Q2TAY7 "11438655|11410362" MGI:1915546 RGD:620694 SMU1 +HGNC:17148 SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "UNG3|FDG|HMUDG" DNA glycosylases 1024 2006-01-06 2014-11-19 23583 ENSG00000123415 OTTHUMG00000160068 uc009znf.3 AF125182 NM_014311 "CCDS8874|CCDS58239" Q53HV7 "10074426|11526119" MGI:1918976 RGD:631403 SMUG1 607753 +HGNC:49401 SMUG1P1 single-strand-selective monofunctional uracil-DNA glycosylase 1 pseudogene 1 pseudogene pseudogene Approved 18q21.1 18q21.1 Transcribed pseudogenes with published function 859 2013-10-28 2014-09-11 100129143 ENSG00000267444 OTTHUMG00000179820 NG_022491 PGOHUM00000235055 +HGNC:16807 SMURF1 SMAD specific E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 KIAA1625 2004-07-29 2016-10-05 57154 ENSG00000198742 OTTHUMG00000150272 uc003upv.3 AB046845 NM_020429 "CCDS34689|CCDS34690" Q9HCE7 10458166 MGI:1923038 RGD:1594738 SMURF1 605568 +HGNC:16809 SMURF2 SMAD specific E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 17q23.3-q24.1 17q23.3-q24.1 C2 domain containing 823 2004-07-29 2016-10-11 64750 ENSG00000108854 OTTHUMG00000179189 uc002jep.2 AF301463 NM_022739 CCDS32707 Q9HAU4 11016919 MGI:1913563 RGD:1310067 SMURF2 605532 +HGNC:44402 SMURF2P1 SMAD specific E3 ubiquitin protein ligase 2 pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 2012-10-05 2014-10-06 107133516 ENSG00000248121 OTTHUMG00000132798 NG_046673 PGOHUM00000294381 +HGNC:20986 SMYD1 SET and MYND domain containing 1 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "BOP|ZMYND22|KMT3D" "Zinc fingers MYND-type|Lysine methyltransferases" "87|487" 2003-04-29 2016-10-05 150572 ENSG00000115593 OTTHUMG00000155045 uc002ssr.4 AF086123 XM_097915 "CCDS33240|CCDS82480" Q8NB12 11923873 MGI:104790 RGD:1305105 SMYD1 606846 +HGNC:20982 SMYD2 SET and MYND domain containing 2 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 "HSKM-B|ZMYND14|KMT3C" "Zinc fingers MYND-type|Lysine methyltransferases" "87|487" 2003-04-28 2014-11-19 56950 ENSG00000143499 OTTHUMG00000037066 uc057pjy.1 AF226053 NM_020197 CCDS31022 Q9NRG4 MGI:1915889 RGD:727785 SMYD2 610663 objectId:2714 +HGNC:15513 SMYD3 SET and MYND domain containing 3 protein-coding gene gene with protein product Approved 1q44 01q44 KMT3E "ZNFN3A1|ZMYND1" zinc finger, MYND domain containing 1 "Zinc fingers MYND-type|Lysine methyltransferases" "87|487" 2001-04-06 2003-05-16 2003-05-14 2014-11-19 64754 ENSG00000185420 OTTHUMG00000040508 uc001ibl.4 AK023594 NM_022743 "CCDS31083|CCDS53486" Q9H7B4 MGI:1916976 RGD:1562635 SMYD3 608783 +HGNC:41406 SMYD3-IT1 SMYD3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q44 01q44 SMYD3 intronic transcript 1 (non-protein coding) 2011-08-23 2015-02-25 2015-02-25 106478975 ENSG00000230184 OTTHUMG00000040509 uc057qys.1 +HGNC:21067 SMYD4 SET and MYND domain containing 4 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "KIAA1936|ZMYND21" Zinc fingers MYND-type 87 2004-03-05 2014-11-18 114826 ENSG00000186532 OTTHUMG00000090570 uc002ftm.5 AB067523 XM_056082 CCDS11013 Q8IYR2 11572484 MGI:2442796 RGD:1307369 SMYD4 +HGNC:16258 SMYD5 SMYD family member 5 protein-coding gene gene with protein product Approved 2p13.2 02p13.2 "RRG1|NN8-4AG|ZMYND23" RAI15 retinoic acid induced 15 Zinc fingers MYND-type 87 2001-07-17 2003-05-16 2003-05-14 2015-04-21 10322 ENSG00000135632 OTTHUMG00000150482 uc002siw.3 U50383 NM_006062 CCDS33221 Q6GMV2 8754834 MGI:108048 RGD:1309153 SMYD5 +HGNC:11128 SNAI1 snail family transcriptional repressor 1 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "SNA|SLUGH2|SNAH|SNAIL1|SNAIL" "snail 1 (drosophila homolog), zinc finger protein|snail homolog 1 (Drosophila)|snail family zinc finger 1" "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 1998-07-03 2016-05-04 2016-10-05 6615 ENSG00000124216 OTTHUMG00000033048 uc002xuz.4 AF125377 NM_005985 CCDS13423 O95863 10585766 MGI:98330 RGD:620758 SNAI1 604238 +HGNC:11129 SNAI1P1 snail family zinc finger 1 pseudogene 1 pseudogene pseudogene Approved 2q34 02q34 SNAI1L "SNAI1P|SNAI1L1" "snail 1 homolog, zinc finger protein (Drosophila) pseudogene|snail homolog 1 (Drosophila)-like 1|snail homolog 1 (Drosophila) pseudogene 1" 1999-06-18 2010-10-15 2013-05-23 2016-10-05 10415 ENSG00000237194 OTTHUMG00000154657 AF153502 NG_000884 10585766 PGOHUM00000241098 +HGNC:11094 SNAI2 snail family transcriptional repressor 2 protein-coding gene gene with protein product Approved 8q11.21 08q11.21 "SLUGH1|SNAIL2" SLUG "slug homolog, zinc finger protein (chicken)|snail homolog 2 (Drosophila)|snail family zinc finger 2" "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 1998-07-03 2002-02-28 2016-05-04 2016-05-04 6591 ENSG00000019549 OTTHUMG00000149912 uc064mrw.1 U97060 NM_003068 CCDS6146 O43623 "9337409|9721220" MGI:1096393 RGD:3722 SNAI2 602150 119757 +HGNC:18411 SNAI3 snail family transcriptional repressor 3 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "SMUC|Zfp293" ZNF293 "zinc finger protein 293|snail homolog 3 (Drosophila)|snail family zinc finger 3" "Zinc fingers C2H2-type|SNAG transcriptional repressors" "28|1259" 2003-02-28 2016-05-04 2016-05-04 333929 ENSG00000185669 OTTHUMG00000173243 uc002flj.4 BC041461 NM_178310 CCDS32505 Q3KNW1 12579345 MGI:1353563 RGD:1309658 SNAI3 612741 +HGNC:28327 SNAI3-AS1 SNAI3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16q24.2 16q24.2 MGC23284 2012-11-06 2016-10-05 197187 ENSG00000260630 OTTHUMG00000173242 uc002fli.6 NR_024399 12477932 +HGNC:11131 SNAP23 synaptosome associated protein 23 protein-coding gene gene with protein product Approved 15q15.1-q15.2 15q15.1-q15.2 "SNAP23A|SNAP23B|HsT17016" synaptosomal-associated protein, 23kDa SNAREs 1124 1998-12-17 2016-06-01 2016-10-11 8773 ENSG00000092531 OTTHUMG00000130625 uc001zpz.3 Y09567 NM_003825 "CCDS10087|CCDS10088" O00161 "9070898|8663154" MGI:109356 RGD:620221 SNAP23 602534 +HGNC:16561 SNAP23P1 synaptosome associated protein 23 pseudogene 1 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ155G6.3 SNAP23P synaptosomal-associated protein, 23kDa pseudogene 2001-09-17 2016-06-01 2016-06-01 2016-06-01 101290500 ENSG00000230758 OTTHUMG00000032689 AL121903 NG_033168 PGOHUM00000247557 +HGNC:11132 SNAP25 synaptosome associated protein 25 protein-coding gene gene with protein product Approved 20p12.2 20p12.2 "SNAP-25|RIC-4|RIC4|SEC9|bA416N4.2|dJ1068F16.2" resistance to inhibitors of cholinesterase 4 homolog SNAP synaptosomal-associated protein, 25kDa SNAREs 1124 1995-01-24 2016-06-01 2016-10-05 6616 ENSG00000132639 OTTHUMG00000031863 uc002wnr.3 NM_130811 "CCDS13109|CCDS13110" P60880 "8661740|10692432" MGI:98331 RGD:3728 SNAP25 600322 426049 +HGNC:44312 SNAP25-AS1 SNAP25 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p12.2 20p12.2 SNAP25 antisense RNA 1 (non-protein coding) 2012-08-09 2012-08-15 2012-10-12 100131208 ENSG00000227906 OTTHUMG00000031867 uc061vjg.1 "AK124961|BF244758|DA318406" NR_040710 +HGNC:11133 SNAP29 synaptosome associated protein 29 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "SNAP-29|CEDNIK" soluble 29 kDa NSF attachment protein synaptosomal-associated protein, 29kDa SNAREs 1124 1998-12-17 2016-06-01 2016-06-01 9342 ENSG00000099940 OTTHUMG00000150765 uc011ahw.3 AF115436 NM_004782 CCDS13784 O95721 "9852078|10591208" MGI:1914724 RGD:620225 SNAP29 604202 119761 +HGNC:30669 SNAP47 synaptosome associated protein 47 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "SVAP1|SNAP-47" C1orf142 "chromosome 1 open reading frame 142|synaptosomal-associated protein, 47kDa" 2005-07-08 2008-10-27 2016-06-01 2016-06-01 116841 ENSG00000143740 OTTHUMG00000037697 uc001hrf.2 AY090635 NM_053052 "CCDS1562|CCDS81429" Q5SQN1 16621800 MGI:1915076 RGD:735194 SNAP47 +HGNC:41501 SNAP47-AS1 SNAP47 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q42.13 01q42.13 SNAP47-IT1 "SNAP47 intronic transcript 1 (non-protein coding)|SNAP47 antisense RNA 1 (non-protein coding)" 2011-08-10 2012-05-25 2012-08-15 2014-11-19 100885800 ENSG00000230005 OTTHUMG00000041233 uc057qas.1 AK057311 +HGNC:14986 SNAP91 synaptosome associated protein 91 protein-coding gene gene with protein product Approved 6q14.2 06q14.2 "KIAA0656|AP180|CALM" synaptosomal-associated protein, 91 kDa (mouse) homolog 2001-03-27 2016-06-01 2016-10-05 9892 ENSG00000065609 OTTHUMG00000015114 uc063puv.1 AB014556 XM_005248770 "CCDS47455|CCDS56437|CCDS56438" O60641 "9734811|12493563|10436022" MGI:109132 RGD:69276 SNAP91 607923 +HGNC:11134 SNAPC1 small nuclear RNA activating complex polypeptide 1 protein-coding gene gene with protein product Approved 14q23.2 14q23.2 "SNAP43|PTFgamma" "small nuclear RNA activating complex, polypeptide 1, 43kD|small nuclear RNA activating complex, polypeptide 1, 43kDa" SNAP complex 952 1996-04-12 2015-11-09 2016-10-05 6617 ENSG00000023608 OTTHUMG00000140343 uc001xft.3 Z47542 NM_003082 CCDS9755 Q16533 9644240 MGI:1922877 RGD:1304671 SNAPC1 600591 +HGNC:11135 SNAPC2 small nuclear RNA activating complex polypeptide 2 protein-coding gene gene with protein product Approved 19p13 19p13 "SNAP45|PTFdelta" "small nuclear RNA activating complex, polypeptide 2, 45kD|small nuclear RNA activating complex, polypeptide 2, 45kDa" SNAP complex 952 1996-04-12 2015-11-09 2015-11-09 6618 ENSG00000104976 OTTHUMG00000182456 uc002miw.3 U44898 NM_003083 CCDS12190 Q13487 8633057 MGI:1914861 RGD:1304589 SNAPC2 605076 +HGNC:11136 SNAPC3 small nuclear RNA activating complex polypeptide 3 protein-coding gene gene with protein product Approved 9p22.3 09p22.3 "SNAP50|PTFbeta|MGC33124|MGC132011" "small nuclear RNA activating complex, polypeptide 3, 50kD|small nuclear RNA activating complex, polypeptide 3, 50kDa" SNAP complex 952 1996-04-12 2015-11-09 2015-11-09 6619 ENSG00000164975 OTTHUMG00000019583 uc064sfa.1 U71300 NM_001039697 CCDS6478 Q92966 9003788 MGI:1916338 RGD:1305172 SNAPC3 602348 +HGNC:11137 SNAPC4 small nuclear RNA activating complex polypeptide 4 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "SNAP190|PTFalpha|FLJ13451" "small nuclear RNA activating complex, polypeptide 4, 190kD|small nuclear RNA activating complex, polypeptide 4, 190kDa" "Myb/SANT domain containing|SNAP complex " "532|952" 1998-02-17 2015-11-09 2015-11-09 6621 ENSG00000165684 OTTHUMG00000020929 uc004chh.4 AF032387 NM_003086 CCDS6998 Q5SXM2 9418884 MGI:2443935 RGD:1309048 SNAPC4 602777 +HGNC:15484 SNAPC5 small nuclear RNA activating complex polypeptide 5 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 SNAP19 "small nuclear RNA activating complex, polypeptide 5, 19kD|small nuclear RNA activating complex, polypeptide 5, 19kDa" SNAP complex 952 2001-04-04 2015-11-09 2016-10-05 10302 ENSG00000174446 OTTHUMG00000133195 uc002apu.2 AF093593 NM_001329615 CCDS10217 O75971 9732265 MGI:1914282 RGD:1582813 SNAPC5 605979 +HGNC:38667 SNAPC5P1 small nuclear RNA activating complex polypeptide 5 pseudogene 1 pseudogene pseudogene Approved 6p25.1 06p25.1 small nuclear RNA activating complex, polypeptide 5, 19kDa pseudogene 1 2010-07-08 2015-11-09 2015-11-09 100750245 ENSG00000241216 OTTHUMG00000014187 NG_030348 PGOHUM00000243051 +HGNC:17145 SNAPIN SNAP associated protein protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "BLOC1S7|BORCS3" "snapin|SNAP-25-binding protein|biogenesis of lysosomal organelles complex-1, subunit 7" SNAPAP SNAP-associated protein "Biogenesis of lysosomal organelles complex 1 |BLOC-1 related complex" "452|1048" 2004-01-16 2007-11-14 2016-01-25 2016-10-05 23557 ENSG00000143553 OTTHUMG00000037086 uc001fcq.5 AF086837 NM_012437 CCDS1049 O95295 "10195194|12659861" MGI:1333745 RGD:1560377 SNAPIN 607007 +HGNC:34304 SNAR-A1 small ILF3/NF90-associated RNA A1 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 SNAR-A53113498 small nuclear ILF3/NF90-associated RNA A1 Small nuclear RNAs 849 2008-06-20 2008-07-03 2008-07-03 100126798 EU071051 NR_004435 +HGNC:34305 SNAR-A2 small ILF3/NF90-associated RNA A2 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 SNAR-A53129250 small nuclear ILF3/NF90-associated RNA A2 Small nuclear RNAs 849 2008-06-20 2008-07-03 2008-07-03 100126799 EU071052 NR_004436 +HGNC:34306 SNAR-A3 small ILF3/NF90-associated RNA A3 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A53118848 small nuclear ILF3/NF90-associated RNA A3 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169951 EU071053 NR_024214 +HGNC:34307 SNAR-A4 small ILF3/NF90-associated RNA A4 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A55287678 small nuclear ILF3/NF90-associated RNA A4 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169956 EU071054 NR_024215 +HGNC:34308 SNAR-A5 small ILF3/NF90-associated RNA A5 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A55296080 small nuclear ILF3/NF90-associated RNA A5 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169952 EU071055 NR_024223 +HGNC:34309 SNAR-A6 small ILF3/NF90-associated RNA A6 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A55299144 small nuclear ILF3/NF90-associated RNA A6 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169957 EU071056 NR_024227 +HGNC:34310 SNAR-A7 small ILF3/NF90-associated RNA A7 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A55302203 small nuclear ILF3/NF90-associated RNA A7 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169953 EU071057 NR_024224 +HGNC:34311 SNAR-A8 small ILF3/NF90-associated RNA A8 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A55307557 small nuclear ILF3/NF90-associated RNA A8 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169958 EU071058 NR_024228 +HGNC:34312 SNAR-A9 small ILF3/NF90-associated RNA A9 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A55312909 small nuclear ILF3/NF90-associated RNA A9 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169955 EU071059 NR_024226 +HGNC:34313 SNAR-A10 small ILF3/NF90-associated RNA A10 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A55318263 Small nuclear RNAs 849 2008-07-03 2012-09-27 100170216 EU071060 NR_024229 +HGNC:34314 SNAR-A11 small ILF3/NF90-associated RNA A11 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A55323591 small nuclear ILF3/NF90-associated RNA A11 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169954 EU071061 NR_024225 +HGNC:34315 SNAR-A12 small ILF3/NF90-associated RNA A12 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 small nuclear ILF3/NF90-associated RNA A12 Small nuclear RNAs 849 2008-06-20 2008-07-03 2008-07-03 100126800 EU071062 NR_004437 +HGNC:34316 SNAR-A13 small ILF3/NF90-associated RNA A13 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 snaR-A53139991 small nuclear ILF3/NF90-associated RNA A13 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100169959 EU071063 NR_024216 +HGNC:34338 SNAR-A14 small ILF3/NF90-associated RNA A14 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 SNAR-A55293015 small nuclear ILF3/NF90-associated RNA A14 Small nuclear RNAs 849 2008-06-20 2008-07-03 2012-09-27 100191063 NR_024242 +HGNC:34317 SNAR-B1 small ILF3/NF90-associated RNA B1 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170224 EU071064 NR_024231 +HGNC:34318 SNAR-B2 small ILF3/NF90-associated RNA B2 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170217 EU071065 NR_024230 +HGNC:34319 SNAR-C1 small ILF3/NF90-associated RNA C1 non-coding RNA RNA, small nuclear Approved 19q13.32 19q13.32 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170225 EU071066 NR_024220 +HGNC:34320 SNAR-C2 small ILF3/NF90-associated RNA C2 non-coding RNA RNA, small nuclear Approved 19q13.32 19q13.32 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170218 EU071067 NR_024217 +HGNC:34321 SNAR-C3 small ILF3/NF90-associated RNA C3 non-coding RNA RNA, small nuclear Approved 19q13.32 19q13.32 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170226 EU071068 NR_024221 +HGNC:34322 SNAR-C4 small ILF3/NF90-associated RNA C4 non-coding RNA RNA, small nuclear Approved 19q13.32 19q13.32 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170219 EU071069 NR_024218 +HGNC:34323 SNAR-C5 small ILF3/NF90-associated RNA C5 non-coding RNA RNA, small nuclear Approved 19q13.32 19q13.32 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170223 EU071070 NR_024219 +HGNC:34324 SNAR-D small ILF3/NF90-associated RNA D non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170227 EU071071 NR_024243 +HGNC:34325 SNAR-E small ILF3/NF90-associated RNA E non-coding RNA RNA, small nuclear Approved 19q13.32 19q13.32 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170220 EU071072 NR_024258 +HGNC:34326 SNAR-F small ILF3/NF90-associated RNA F non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 small nuclear ILF3/NF90-associated RNA F Small nuclear RNAs 849 2008-06-20 2008-07-03 2008-07-03 100126781 EU071073 NR_004384 +HGNC:34327 SNAR-G1 small ILF3/NF90-associated RNA G1 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 small nuclear ILF3/NF90-associated RNA G1 Small nuclear RNAs 849 2008-06-20 2008-07-03 2008-07-03 100126780 EU071074 NR_004383 +HGNC:34328 SNAR-G2 small ILF3/NF90-associated RNA G2 non-coding RNA RNA, small nuclear Approved 19q13.33 19q13.33 Small nuclear RNAs 849 2008-07-03 2008-07-08 100170228 EU071075 NR_024244 +HGNC:34329 SNAR-H small ILF3/NF90-associated RNA H non-coding RNA RNA, small nuclear Approved 2p12 02p12 snaR-2 small ILF3/NF90-associated RNA 2 Small nuclear RNAs 849 2008-07-03 2012-09-27 100170221 EU071076 NR_024342 +HGNC:34330 SNAR-I small ILF3/NF90-associated RNA I non-coding RNA RNA, small nuclear Approved 3q28 03q28 snaR-3 small ILF3/NF90-associated RNA 3 Small nuclear RNAs 849 2008-07-03 2012-09-27 100170222 EU071077 NR_024343 +HGNC:11138 SNCA synuclein alpha protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "NACP|PD1|alpha-synuclein" non A4 component of amyloid precursor "PARK1|PARK4" "Parkinson disease (autosomal dominant, Lewy body) 4|synuclein, alpha (non A4 component of amyloid precursor)" Parkinson disease associated genes 672 1995-01-24 2015-11-13 2016-10-05 6622 ENSG00000145335 OTTHUMG00000130948 uc003hsr.4 L08850 XM_011532204 "CCDS3634|CCDS43252" P37840 "8248242|14593171" MGI:1277151 RGD:3729 Parkinson's disease Mutation Database|http://grenada.lumc.nl/LOVD2/TPI/home.php?select_db=SNCA SNCA 163890 119763 +HGNC:50600 SNCA-AS1 SNCA antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q22.1 04q22.1 2014-05-22 2014-05-22 644248 ENSG00000247775 OTTHUMG00000161186 NR_045481 +HGNC:11139 SNCAIP synuclein alpha interacting protein protein-coding gene gene with protein product Approved 5q23.2 05q23.2 SYPH1 synphilin Ankyrin repeat domain containing 403 1999-05-21 2015-11-13 2016-02-15 9627 ENSG00000064692 OTTHUMG00000128915 uc003ksw.2 AF167306 XM_011543737 "CCDS4131|CCDS58964|CCDS78054" Q9Y6H5 10319874 MGI:1915097 RGD:1309283 SNCAIP 603779 +HGNC:11140 SNCB synuclein beta protein-coding gene gene with protein product Approved 5q35.2 05q35.2 1995-03-03 2015-11-13 2016-10-05 6620 ENSG00000074317 OTTHUMG00000130661 uc003meq.4 AF053134 NM_001001502 "CCDS4406|CCDS83048" Q16143 "7558013|9806846" MGI:1889011 RGD:70992 SNCB 602569 158439 +HGNC:11141 SNCG synuclein gamma protein-coding gene gene with protein product Approved 10q23.2 10q23.2 "BCSG1|SR|persyn" "synoretin|breast cancer-specific gene 1" 1998-04-07 2015-11-13 2016-10-05 6623 ENSG00000173267 OTTHUMG00000018656 uc001keb.3 AF044311 XM_011540105 "CCDS7380|CCDS81483" O76070 "9044857|9700196" MGI:1298397 RGD:70996 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ SNCG 602998 +HGNC:30646 SND1 staphylococcal nuclease and tudor domain containing 1 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "TDRD11|p100" "p100 EBNA2 co-activator|Tudor-SN" Tudor domain containing 780 2006-12-19 2016-10-05 27044 ENSG00000197157 OTTHUMG00000157560 uc003vmi.4 NM_014390 CCDS34747 Q7KZF4 "7651391|9003410|12819296" MGI:1929266 RGD:631340 SND1 602181 +HGNC:24158 SND1-IT1 SND1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 7q32.1 07q32.1 "NAG8|NSG-X" nasopharyngeal carcinoma associated gene protein-8 C7orf54 "chromosome 7 open reading frame 54|SND1 intronic transcript 1 (non-protein coding)" 2007-07-13 2011-11-25 2015-02-25 2015-02-25 27099 ENSG00000279078 OTTHUMG00000189460 uc003vmj.4 AF191492 NR_027330 Q9HBX3 +HGNC:24696 SNED1 sushi, nidogen and EGF like domains 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "FLJ00133|SST3|Snep" sushi, nidogen and EGF-like domains 1 "Fibronectin type III domain containing|Sushi domain containing" "555|1179" 2004-10-18 2016-01-21 2016-08-25 25992 ENSG00000162804 OTTHUMG00000151803 uc002wah.2 AK074062 XM_059482 CCDS46562 Q8TER0 "12477932|15162516" MGI:3045960 RGD:1566079 SNED1 616634 +HGNC:17028 SNF8 SNF8, ESCRT-II complex subunit protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "EAP30|VPS22|Dot3" SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae) ESCRT-II 1117 2005-08-02 2013-06-05 2014-11-19 11267 ENSG00000159210 OTTHUMG00000160569 uc002ioj.5 AF156102 NM_007241 "CCDS11541|CCDS82156" Q96H20 "10419521|15329733" MGI:1343161 RGD:1310144 SNF8 610904 +HGNC:32688 SNHG1 small nucleolar RNA host gene 1 non-coding RNA RNA, long non-coding Approved 11q12.3 11q12.3 "UHG|NCRNA00057|LINC00057" "U22 snoRNA host gene|non-protein coding RNA 57|long intergenic non-protein coding RNA 57" small nucleolar RNA host gene 1 (non-protein coding) Long non-coding RNAs 788 2006-07-31 2015-02-20 2015-08-21 23642 ENSG00000255717 OTTHUMG00000167743 uc058cou.1 L36588 NR_003098 "8559254|23801869|26252651" 603222 snhg1 +HGNC:10118 SNHG3 small nucleolar RNA host gene 3 non-coding RNA RNA, long non-coding Approved 1p35.3 01p35.3 "U17HG|U17HG-A|NCRNA00014" non-protein coding RNA 14 "RNU17D|RNU17C" "RNA, U17D small nucleolar|RNA, U17C small nucleolar|small nucleolar RNA host gene 3 (non-protein coding)" Long non-coding RNAs 788 1999-12-14 2006-07-31 2015-02-20 2015-02-20 8420 ENSG00000242125 OTTHUMG00000003657 uc031tvj.2 AJ006834 NR_002909.1 9671460 603238 snhg3 +HGNC:32964 SNHG4 small nucleolar RNA host gene 4 non-coding RNA RNA, long non-coding Approved 5q31.2 05q31.2 "U19H|NCRNA00059" non-protein coding RNA 59 small nucleolar RNA host gene 4 (non-protein coding) Long non-coding RNAs 788 2006-07-31 2015-02-20 2015-02-20 724102 ENSG00000281398 OTTHUMG00000189582 uc063hpd.1 NR_003141 9630250 snhg4 +HGNC:21026 SNHG5 small nucleolar RNA host gene 5 non-coding RNA RNA, long non-coding Approved 6q14.3 06q14.3 "MGC16362|bA33E24.2|U50HG|NCRNA00044|LINC00044" "non-protein coding RNA 44|long intergenic non-protein coding RNA 44" C6orf160 "chromosome 6 open reading frame 160|small nucleolar RNA host gene 5 (non-protein coding)" Long non-coding RNAs 788 2003-11-26 2006-07-31 2015-02-20 2015-02-20 387066 ENSG00000203875 OTTHUMG00000015144 uc063pxm.1 BC009220 NR_003038 10792466 613263 snhg5 +HGNC:32965 SNHG6 small nucleolar RNA host gene 6 non-coding RNA RNA, long non-coding Approved 8q13.1 08q13.1 "U87HG|HBII-276HG|NCRNA00058" non-protein coding RNA 58 small nucleolar RNA host gene 6 (non-protein coding) Long non-coding RNAs 788 2006-07-31 2015-02-20 2016-10-05 641638 ENSG00000245910 OTTHUMG00000164743 uc064nkv.1 AY264285 NR_002599 16226852 MGI:1921074 612215 snhg6 +HGNC:28254 SNHG7 small nucleolar RNA host gene 7 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 "MGC16037|NCRNA00061" non-protein coding RNA 61 small nucleolar RNA host gene 7 (non-protein coding) 2006-08-03 2015-02-20 2015-02-20 84973 ENSG00000233016 OTTHUMG00000020949 uc004cim.4 "CR599965|BC042369" NR_003672 12477932 MGI:1919341 +HGNC:33098 SNHG8 small nucleolar RNA host gene 8 non-coding RNA RNA, long non-coding Approved 4q26 04q26 "NCRNA00060|LINC00060" "non-protein coding RNA 60|long intergenic non-protein coding RNA 60" small nucleolar RNA host gene 8 (non-protein coding) 2006-08-03 2015-02-20 2015-02-20 100093630 ENSG00000269893 OTTHUMG00000183991 uc003iby.4 "BC017993|CR625561|BC039555" NR_003584 15199136 +HGNC:33102 SNHG9 small nucleolar RNA host gene 9 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 "DKFZp686N06141|NCRNA00062" non-protein coding RNA 62 small nucleolar RNA host gene 9 (non-protein coding) 2006-08-07 2015-02-20 2015-02-20 735301 ENSG00000255198 OTTHUMG00000166082 uc002cnr.4 "CR749453|BC028232" NR_003142 MGI:1920724 +HGNC:27510 SNHG10 small nucleolar RNA host gene 10 non-coding RNA RNA, long non-coding Approved 14q32.13 14q32.13 "FLJ40557|NCRNA00063|LINC00063" "non-protein coding RNA 63|long intergenic non-protein coding RNA 63" C14orf62 "chromosome 14 open reading frame 62|small nucleolar RNA host gene 10 (non-protein coding)" 2006-08-16 2015-02-20 2015-02-20 283596 ENSG00000247092 OTTHUMG00000171635 uc059eus.1 NR_001459 12477932 MGI:1916684 +HGNC:25046 SNHG11 small nucleolar RNA host gene 11 non-coding RNA RNA, long non-coding Approved 20q11.23 20q11.23 LINC00101 long intergenic non-protein coding RNA 101 C20orf198 "chromosome 20 open reading frame 198|small nucleolar RNA host gene 11 (non-protein coding)" 2006-08-03 2008-04-16 2015-02-20 2015-02-20 128439 ENSG00000174365 OTTHUMG00000032449 uc061wye.1 AF497716 NR_003239 12477932 MGI:2441845 RGD:1563912 +HGNC:30062 SNHG12 small nucleolar RNA host gene 12 non-coding RNA RNA, long non-coding Approved 1p35.3 01p35.3 "PNAS-123|LINC00100|ASLNC04080" long intergenic non-protein coding RNA 100 C1orf79 "chromosome 1 open reading frame 79|small nucleolar RNA host gene 12 (non-protein coding)" 2005-05-24 2008-09-05 2015-02-20 2015-02-26 85028 ENSG00000197989 OTTHUMG00000003654 uc057dzf.1 "AF277181|KJ782215" NR_024127 Q9BXW3 25695231 +HGNC:37462 SNHG14 small nucleolar RNA host gene 14 non-coding RNA RNA, long non-coding Approved 15q11.2 15q11.2 "NCRNA00214|UBE3A-AS" non-protein coding RNA 214 UBE3A-AS1 "UBE3A antisense RNA 1 (non-protein coding)|small nucleolar RNA host gene 14 (non-protein coding)" 2009-10-16 2011-08-22 2015-02-20 2015-02-20 104472715 ENSG00000224078 OTTHUMG00000056661 uc001yzw.2 23771028 616259 +HGNC:27797 SNHG15 small nucleolar RNA host gene 15 non-coding RNA RNA, long non-coding Approved 7p13 07p13 "FLJ38860|MYO1GUT|Linc-Myo1g" MYO1G upstream transcript C7orf40 "chromosome 7 open reading frame 40|small nucleolar RNA host gene 15 (non-protein coding)" 2006-08-04 2011-11-24 2015-02-20 2015-02-20 285958 ENSG00000232956 OTTHUMG00000179544 uc003tml.5 "BC092459|AK096179" NR_003697 "14702039|24036268" MGI:3650059 +HGNC:44352 SNHG16 small nucleolar RNA host gene 16 non-coding RNA RNA, long non-coding Approved 17q25.1 17q25.1 ncRAN non-coding RNA expressed in aggressive neuroblastoma small nucleolar RNA host gene 16 (non-protein coding) Long non-coding RNAs 788 2012-08-17 2015-02-20 2015-02-20 100507246 ENSG00000163597 OTTHUMG00000132201 uc002jsd.2 "BC042949|BC100293|AB447886" NR_038108 "19287950|21147498|24519959" +HGNC:48600 SNHG17 small nucleolar RNA host gene 17 non-coding RNA RNA, long non-coding Approved 20q11.23 20q11.23 small nucleolar RNA host gene 17 (non-protein coding) 2013-05-23 2015-02-20 2015-02-20 388796 ENSG00000196756 OTTHUMG00000032442 "BC032119|BC052370" NR_015366 +HGNC:49007 SNHG18 small nucleolar RNA host gene 18 non-coding RNA RNA, long non-coding Approved 5p15.31 05p15.31 small nucleolar RNA host gene 18 (non-protein coding) 2013-07-30 2015-02-20 2015-02-20 100505806 ENSG00000250786 OTTHUMG00000161753 NR_045196 +HGNC:49574 SNHG19 small nucleolar RNA host gene 19 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 SNORD60HG small nucleolar RNA host gene 19 (non-protein coding) 2014-01-17 2015-02-20 2015-02-20 100507303 ENSG00000260260 OTTHUMG00000177010 NR_132114 +HGNC:33099 SNHG20 small nucleolar RNA host gene 20 non-coding RNA RNA, long non-coding Approved 17q25.2 17q25.2 "PRO0872|FLJ25582|DKFZp686L05235|SCARNA16HG" "C17orf86|NCRNA00338|LINC00338" "chromosome 17 open reading frame 86|non-protein coding RNA 338|long intergenic non-protein coding RNA 338|small nucleolar RNA host gene 20 (non-protein coding)" 2006-08-03 2014-03-31 2015-02-20 2015-02-20 654434 ENSG00000234912 OTTHUMG00000132169 AF130050 NR_027058 16373490 MGI:1924222 +HGNC:50284 SNHG21 small nucleolar RNA host gene 21 non-coding RNA RNA, long non-coding Approved 15q25.2 15q25.2 "SCARNA15HG|FSD2-AS1|RP11-752G15.6" FSD2 antisense RNA 1 small nucleolar RNA host gene 21 (non-protein coding) 2014-03-27 2015-02-20 2015-02-20 100505616 ENSG00000250988 OTTHUMG00000172404 "AA284521|BX112407" NR_110096 +HGNC:50285 SNHG22 small nucleolar RNA host gene 22 non-coding RNA RNA, long non-coding Approved 18q21.1 18q21.1 SCARNA17HG small nucleolar RNA host gene 22 (non-protein coding) 2014-03-27 2015-02-20 2015-02-20 103091864 ENSG00000267322 OTTHUMG00000179829 AK123464 NR_117096 +HGNC:50622 SNHG23 small nucleolar RNA host gene 23 non-coding RNA RNA, long non-coding Approved 14q32.31 14q32.31 small nucleolar RNA host gene 23 (non-protein coding) 2014-05-29 2015-02-20 2015-02-20 100507242 ENSG00000225746 OTTHUMG00000029060 BX508291 +HGNC:50825 SNHG24 small nucleolar RNA host gene 24 non-coding RNA RNA, long non-coding Approved 14q32.31 14q32.31 small nucleolar RNA host gene 24 (non-protein coding) 2014-06-21 2015-02-20 2015-02-20 101929369 ENSG00000271417 OTTHUMG00000184365 NR_110178 +HGNC:51534 SNHG25 small nucleolar RNA host gene 25 non-coding RNA RNA, long non-coding Approved 17q23.3 17q23.3 2015-02-20 2015-02-20 105376843 ENSG00000266402 OTTHUMG00000178880 NR_132278 +HGNC:30587 SNIP1 Smad nuclear interacting protein 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 2005-06-06 2014-11-19 79753 ENSG00000163877 OTTHUMG00000004225 uc001cbi.5 NM_024700 CCDS419 Q8TAD8 "10887155|15378006" MGI:2156003 RGD:1359268 SNIP1 608241 +HGNC:11149 SNN stannin protein-coding gene gene with protein product Approved 16p13.13 16p13.13 1998-09-15 2016-10-05 8303 ENSG00000184602 OTTHUMG00000090535 uc002dbf.5 AF030196 NM_003498 CCDS10549 O75324 9657854 MGI:1276549 RGD:3730 SNN 603032 +HGNC:32557 SNORA1 small nucleolar RNA, H/ACA box 1 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 ACA1 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2014-11-19 677792 ENSG00000206834 uc064mxy.1 AJ609425 NR_003026 "15199136|16381836" SR0000068 +HGNC:32584 SNORA2A small nucleolar RNA, H/ACA box 2A non-coding RNA RNA, small nucleolar Approved 12q13.11 12q13.11 ACA2A Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677793 ENSG00000206612 uc001rsb.1 AJ609426 NR_002950 "15199136|16381836" SR0000077 +HGNC:32585 SNORA2B small nucleolar RNA, H/ACA box 2B non-coding RNA RNA, small nucleolar Approved 12q13.11 12q13.11 ACA2b Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677794 ENSG00000207313 uc001rsc.1 AJ609427 NR_002951 "15199136|16381836" SR0000078 +HGNC:32624 SNORA2C small nucleolar RNA, H/ACA box 2C non-coding RNA RNA, small nucleolar Approved 12q13.11 12q13.11 ACA34 SNORA34 small nucleolar RNA, H/ACA box 34 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-11-11 2015-11-11 2015-11-11 677815 ENSG00000221491 uc001rsa.3 AJ609443 NR_002968 "15199136|16381836" 615487 SR0000076 +HGNC:32586 SNORA3A small nucleolar RNA, H/ACA box 3A non-coding RNA RNA, small nucleolar Approved 11p15.4 11p15.4 ACA3 "SNORA3|SNORA45A" "small nucleolar RNA, H/ACA box 3|small nucleolar RNA, H/ACA box 45A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-11-11 2015-11-11 2015-11-11 619562 ENSG00000200983 uc064myo.1 AJ609428 NR_002580 "15199136|16381836" SR0000046 +HGNC:32638 SNORA3B small nucleolar RNA, H/ACA box 3B non-coding RNA RNA, small nucleolar Approved 11p15.4 11p15.4 ACA3-2 "SNORA45|SNORA45B" "small nucleolar RNA, H/ACA box 45|small nucleolar RNA, H/ACA box 45B" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-11-11 2015-11-11 2015-11-11 677826 ENSG00000212607 AM055744 NR_002977 "16361266|16381836" 611333 SR0000047 +HGNC:32587 SNORA4 small nucleolar RNA, H/ACA box 4 non-coding RNA RNA, small nucleolar Approved 3q27.3 03q27.3 ACA4 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 619568 ENSG00000263776 uc064drd.1 AJ609452 NR_002588 "15199136|16381836" SR0000316 +HGNC:32588 SNORA5A small nucleolar RNA, H/ACA box 5A non-coding RNA RNA, small nucleolar Approved 7p13 07p13 ACA5 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 654319 ENSG00000206838 uc003tmz.3 AJ609453 NR_002919 "15199136|16381836" SR0000346 +HGNC:32589 SNORA5B small nucleolar RNA, H/ACA box 5B non-coding RNA RNA, small nucleolar Approved 7p13 07p13 ACA5b Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677795 ENSG00000200656 uc003tna.4 NR_002990 "15199136|16381836" SR0000348 +HGNC:32590 SNORA5C small nucleolar RNA, H/ACA box 5C non-coding RNA RNA, small nucleolar Approved 7p13 07p13 ACA5c Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677796 ENSG00000201772 uc064dls.1 NR_002991 "15199136|16381836" 611335 SR0000347 +HGNC:32591 SNORA6 small nucleolar RNA, H/ACA box 6 non-coding RNA RNA, small nucleolar Approved 3p22.2 03p22.2 ACA6 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 574040 ENSG00000206760 uc062ikb.1 "AJ609429|AF375472" NR_002325 "15199136|16381836" SR0000304 +HGNC:32592 SNORA7A small nucleolar RNA, H/ACA box 7A non-coding RNA RNA, small nucleolar Approved 3p25.2 03p25.2 ACA7 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 619563 ENSG00000207496 uc062gwu.1 AJ609430 NR_002582 "15199136|16381836" SR0000303 +HGNC:32593 SNORA7B small nucleolar RNA, H/ACA box 7B non-coding RNA RNA, small nucleolar Approved 3q21.3 03q21.3 ACA7B Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677797 ENSG00000207088 uc003emf.2 NR_002992 "15199136|16381836" SR0000308 +HGNC:32596 SNORA8 small nucleolar RNA, H/ACA box 8 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 ACA8 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 654320 ENSG00000207304 uc063omb.1 AJ609454 NR_002920 "15199136|16381836" SR0000069 +HGNC:32597 SNORA9 small nucleolar RNA, H/ACA box 9 non-coding RNA RNA, small nucleolar Approved 7p13 07p13 "ACA9|SNORA9A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677798 ENSG00000277184 uc058xko.1 AJ609431 NR_002952 "15199136|16381836" SR0000345 +HGNC:32598 SNORA10 small nucleolar RNA, H/ACA box 10 non-coding RNA RNA, small nucleolar Approved 16p13.3 16p13.3 "ACA10|SNORA10A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 574042 ENSG00000206811 uc002cnp.1 AJ609432 NR_002327 "15199136|16381836" SR0000216 +HGNC:32599 SNORA11 small nucleolar RNA, H/ACA box 11 non-coding RNA RNA, small nucleolar Approved Xp11.21 Xp11.21 "U107|SNORA11A" small nucleolar RNA, H/ACA box 11A Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677799 ENSG00000221716 uc059cwa.1 AM055729 NR_002953 "16361266|16381836" 300662 SR0000368 +HGNC:33620 SNORA11B small nucleolar RNA, H/ACA box 11B non-coding RNA RNA, small nucleolar Approved 14q32.12 14q32.12 small nucleolar RNA, H/ACA box 11B (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2007-08-24 2012-06-21 2012-06-21 100124539 ENSG00000221102 uc010atw.4 AM413016 NR_003709 SR0000461 +HGNC:33621 SNORA11C small nucleolar RNA, H/ACA box 11C non-coding RNA RNA, small nucleolar Approved Xp11.3 Xp11.3 small nucleolar RNA, H/ACA box 11C (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2007-08-24 2012-06-21 2012-06-21 100124540 ENSG00000221459 uc010nhr.2 AM413017 NR_003710 SR0000462 +HGNC:33622 SNORA11D small nucleolar RNA, H/ACA box 11D non-coding RNA RNA, small nucleolar Approved Xp11.22 Xp11.22 Small nucleolar RNAs, H/ACA box 846 2007-08-24 2008-09-09 100124541 ENSG00000221475 uc064zhz.1 AM413018 NR_003711 SR0000463 +HGNC:33623 SNORA11E small nucleolar RNA, H/ACA box 11E non-coding RNA RNA, small nucleolar Approved Xp11.22 Xp11.22 Small nucleolar RNAs, H/ACA box 846 2007-08-24 2014-01-30 101340250 ENSG00000221705 uc064zho.1 AM413019 NR_102368 SR0000464 +HGNC:32600 SNORA12 small nucleolar RNA, H/ACA box 12 non-coding RNA RNA, small nucleolar Approved 10q24.31 10q24.31 U108 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677800 ENSG00000212464 uc061jii.1 AM055730 NR_002954 "16361266|16381836" 611330 SR0000042 +HGNC:32601 SNORA13 small nucleolar RNA, H/ACA box 13 non-coding RNA RNA, small nucleolar Approved 5q22.2 05q22.2 ACA13 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 654322 ENSG00000238363 uc003kpt.1 AJ609455 NR_002922 "3342024|15199136|16381836" SR0000325 +HGNC:32602 SNORA14A small nucleolar RNA, H/ACA box 14A non-coding RNA RNA, small nucleolar Approved 7q11.23 07q11.23 ACA14a Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677801 ENSG00000201643 uc003udz.2 AJ609456 NR_002955 "15199136|16381836" SR0000351 +HGNC:32603 SNORA14B small nucleolar RNA, H/ACA box 14B non-coding RNA RNA, small nucleolar Approved 1q42.3 01q42.3 ACA14b Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677802 ENSG00000207181 uc001hwm.1 AJ609457 NR_002956 "15199136|16381836" SR0000040 +HGNC:32604 SNORA15 small nucleolar RNA, H/ACA box 15 non-coding RNA RNA, small nucleolar Approved 7p11.2 07p11.2 "ACA15|SNORA15A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-11-11 677803 ENSG00000207168 uc064dyr.1 AJ609458 NR_002957 "15199136|16381836" SR0000349 +HGNC:32605 SNORA16A small nucleolar RNA, H/ACA box 16A non-coding RNA RNA, small nucleolar Approved 1p35.3 01p35.3 ACA16 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-02-02 692073 ENSG00000274582 uc057dzj.1 AJ609433 NR_003035 "15199136|16381836" SR0000008 +HGNC:32606 SNORA16B small nucleolar RNA, H/ACA box 16B non-coding RNA RNA, small nucleolar Approved 1q32.3 01q32.3 U98b Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 692157 ENSG00000201544 uc009xdf.2 AY349599 NR_004389 "14602913|16381836" SR0000038 +HGNC:32607 SNORA17A small nucleolar RNA, H/ACA box 17A non-coding RNA RNA, small nucleolar Approved 9q34.3 09q34.3 ACA17 SNORA17 small nucleolar RNA, H/ACA box 17 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-11-11 2015-11-11 2015-11-11 677804 ENSG00000274998 uc062ghw.1 AJ609434 NR_002958 "15199136|16381836" SR0000366 +HGNC:32636 SNORA17B small nucleolar RNA, H/ACA box 17B non-coding RNA RNA, small nucleolar Approved 9q34.3 09q34.3 ACA43 SNORA43 small nucleolar RNA, H/ACA box 43 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-11-11 2015-11-11 2015-11-11 677824 ENSG00000276161 uc058dwu.1 AJ609446 NR_002975 "15199136|16381836" SR0000365 +HGNC:32608 SNORA18 small nucleolar RNA, H/ACA box 18 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 ACA18 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677805 ENSG00000207145 uc062qcu.1 AJ609471 NR_002959 "15199136|16381836" SR0000071 +HGNC:32609 SNORA19 small nucleolar RNA, H/ACA box 19 non-coding RNA RNA, small nucleolar Approved 10q26.11 10q26.11 ACA19 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 641451 ENSG00000207468 uc001ldv.4 AJ609435 NR_002917 "15199136|16381836" RGD:9685075 SR0000043 +HGNC:32610 SNORA20 small nucleolar RNA, H/ACA box 20 non-coding RNA RNA, small nucleolar Approved 6q25.3 06q25.3 ACA20 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677806 ENSG00000207392 uc064xwp.1 AJ609459 NR_002960 "15199136|16381836" SR0000342 +HGNC:32611 SNORA21 small nucleolar RNA, H/ACA box 21 non-coding RNA RNA, small nucleolar Approved 17q12 17q12 ACA21 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 619505 ENSG00000199293 uc060eok.1 AJ609436 NR_002576 "15199136|9047361|16381836" SR0000246 +HGNC:32612 SNORA22 small nucleolar RNA, H/ACA box 22 non-coding RNA RNA, small nucleolar Approved 7q11.21 07q11.21 "ACA22|SNORA22A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677807 ENSG00000206634 uc058msa.1 AJ609437 NR_002961 "15199136|16381836" SR0000350 +HGNC:32613 SNORA23 small nucleolar RNA, H/ACA box 23 non-coding RNA RNA, small nucleolar Approved 11p15.4 11p15.4 ACA23 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677808 ENSG00000201998 uc001mhp.2 AJ609438 NR_002962 "15199136|16381836" SR0000048 +HGNC:32614 SNORA24 small nucleolar RNA, H/ACA box 24 non-coding RNA RNA, small nucleolar Approved 4q26 04q26 "ACA24|SNORA24A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677809 ENSG00000275994 uc059kiy.1 AJ609460 NR_002963 "15199136|16381836" SR0000319 +HGNC:32615 SNORA25 small nucleolar RNA, H/ACA box 25 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 "ACA25|SNORA25A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 684959 ENSG00000207112 uc058wju.1 AJ609461 NR_003028 "15199136|16381836" SR0000065 +HGNC:32616 SNORA26 small nucleolar RNA, H/ACA box 26 non-coding RNA RNA, small nucleolar Approved 4q12 04q12 HBI-6 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677810 ENSG00000212588 uc057pey.1 NR_003016 "11387227|16381836" 614626 SR0000318 +HGNC:32617 SNORA27 small nucleolar RNA, H/ACA box 27 non-coding RNA RNA, small nucleolar Approved 13q12.2 13q12.2 ACA27 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 619499 ENSG00000207051 uc021tdc.1 AJ609439 NR_002575 "15199136|16381836" SR0000084 +HGNC:32618 SNORA28 small nucleolar RNA, H/ACA box 28 non-coding RNA RNA, small nucleolar Approved 14q32.32 14q32.32 ACA28 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-02-03 677811 ENSG00000272533 uc001ymv.1 AJ609462 NR_002964 "15199136|16381836" SR0000131 +HGNC:32619 SNORA29 small nucleolar RNA, H/ACA box 29 non-coding RNA RNA, small nucleolar Approved 6q25.3 06q25.3 ACA29 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677812 ENSG00000206910 uc003qsv.1 AJ609472 NR_002965 "15199136|16381836" SR0000343 +HGNC:32620 SNORA30 small nucleolar RNA, H/ACA box 30 non-coding RNA RNA, small nucleolar Approved 16p11.2 16p11.2 "ACA30|SNORA30A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677813 ENSG00000206755 uc060kur.1 AJ609440 NR_002966 "15199136|16381836" SR0000220 +HGNC:32621 SNORA31 small nucleolar RNA, H/ACA box 31 non-coding RNA RNA, small nucleolar Approved 13q14.13 13q14.13 "ACA31|SNORA31A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-30 677814 ENSG00000199477 uc001vaa.1 AJ609441 NR_002967 "15199136|16381836" SR0000085 +HGNC:32622 SNORA32 small nucleolar RNA, H/ACA box 32 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 ACA32 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 692063 ENSG00000206799 uc059dsj.1 AJ609442 NR_003032 "15199136|16381836" SR0000066 +HGNC:32623 SNORA33 small nucleolar RNA, H/ACA box 33 non-coding RNA RNA, small nucleolar Approved 6q23.2 06q23.2 ACA33 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 594839 ENSG00000200534 uc063rmd.1 AJ609473 NR_002436 "15199136|16381836" SR0000341 +HGNC:32625 SNORA35 small nucleolar RNA, H/ACA box 35 non-coding RNA RNA, small nucleolar Approved Xq23 Xq23 "HBI-36|SNORA35A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677816 ENSG00000208839 uc004epw.1 NR_002993 "15199136|16381836" SR0000370 +HGNC:32628 SNORA36A small nucleolar RNA, H/ACA box 36A non-coding RNA RNA, small nucleolar Approved Xq28 Xq28 ACA36 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677817 ENSG00000206948 uc004fmn.4 AJ609463 NR_002969 "15199136|16381836" SR0000374 +HGNC:32629 SNORA36B small nucleolar RNA, H/ACA box 36B non-coding RNA RNA, small nucleolar Approved 1q41 01q41 ACA36b Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677818 ENSG00000222370 uc057pnx.1 NR_002994 "15199136|16381836" SR0000039 +HGNC:33616 SNORA36C small nucleolar RNA, H/ACA box 36C non-coding RNA RNA, small nucleolar Approved 2p14 02p14 small nucleolar RNA, H/ACA box 36C (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2007-08-24 2012-06-21 2012-06-21 100124535 ENSG00000207016 uc061jzw.1 AM413012 NR_003705 RGD:2325445 SR0000465 +HGNC:32630 SNORA37 small nucleolar RNA, H/ACA box 37 non-coding RNA RNA, small nucleolar Approved 18q21.2 18q21.2 ACA37 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677819 ENSG00000207233 uc002lfi.1 AJ609444 NR_002970 "15199136|16381836" SR0000258 +HGNC:32631 SNORA38 small nucleolar RNA, H/ACA box 38 non-coding RNA RNA, small nucleolar Approved 6p21.33 06p21.33 ACA38 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677820 ENSG00000200816 uc003nvd.3 AJ609474 NR_002971 "15199136|16381836" SR0000334 +HGNC:33617 SNORA38B small nucleolar RNA, H/ACA box 38B non-coding RNA RNA, small nucleolar Approved 17q24.2 17q24.2 small nucleolar RNA, H/ACA box 38B (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2007-08-24 2012-06-21 2012-06-21 100124536 ENSG00000200394 uc010dev.4 AM413013 NR_003706 SR0000466 +HGNC:32633 SNORA40 small nucleolar RNA, H/ACA box 40 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 "ACA40|SNORA40A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677822 ENSG00000210825 uc061nzg.1 AJ609445 NR_002973 "15199136|16381836" SR0000072 +HGNC:32634 SNORA41 small nucleolar RNA, H/ACA box 41 non-coding RNA RNA, small nucleolar Approved 2q33.3 02q33.3 "ACA41|SNORA41A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 619569 ENSG00000207406 uc002vbj.3 AJ609464 NR_002590 "15199136|16381836" SR0000279 +HGNC:32637 SNORA44 small nucleolar RNA, H/ACA box 44 non-coding RNA RNA, small nucleolar Approved 1p35.3 01p35.3 ACA44 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-02-03 677825 ENSG00000273544 uc057kxf.1 AJ609466 NR_002976 "15199136|16381836" SR0000007 +HGNC:32639 SNORA46 small nucleolar RNA, H/ACA box 46 non-coding RNA RNA, small nucleolar Approved 16q21 16q21 ACA46 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677827 ENSG00000207493 uc002eny.1 AJ609467 NR_002978 "15199136|16381836" SR0000221 +HGNC:32640 SNORA47 small nucleolar RNA, H/ACA box 47 non-coding RNA RNA, small nucleolar Approved 5q13.3 05q13.3 HBI-115 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677828 ENSG00000238961 uc003kew.1 NR_003014 "11387227|16381836" SR0000323 +HGNC:32641 SNORA48 small nucleolar RNA, H/ACA box 48 non-coding RNA RNA, small nucleolar Approved 17p13.1 17p13.1 "ACA48|SNORA48A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 652965 ENSG00000209582 uc002ghs.1 AJ609447 NR_002918 "15199136|16381836" SR0000228 +HGNC:32642 SNORA49 small nucleolar RNA, H/ACA box 49 non-coding RNA RNA, small nucleolar Approved 12q24.33 12q24.33 ACA49 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677829 ENSG00000208892 uc001ujo.4 AJ609476 NR_002979 "15199136|16381836" SR0000082 +HGNC:32643 SNORA50A small nucleolar RNA, H/ACA box 50A non-coding RNA RNA, small nucleolar Approved 16q21 16q21 ACA50 "SNORA50|SNORA76A" "small nucleolar RNA, H/ACA box 50|small nucleolar RNA, H/ACA box 76A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-11-11 2015-11-11 2015-11-11 677830 ENSG00000206952 uc063eet.1 AJ609468 NR_002980 "15199136|16381836" SR0000222 +HGNC:32662 SNORA50C small nucleolar RNA, H/ACA box 50C non-coding RNA RNA, small nucleolar Approved 17q23.3 17q23.3 ACA62 "SNORA76|SNORA76C" "small nucleolar RNA, H/ACA box 76|small nucleolar RNA, H/ACA box 76C" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-11-11 2015-11-11 2015-11-11 677842 ENSG00000277887 uc059xfx.1 NR_002995 "15199136|16381836" SR0000249 +HGNC:32644 SNORA51 small nucleolar RNA, H/ACA box 51 non-coding RNA RNA, small nucleolar Approved 20p13 20p13 ACA51 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-02-03 677831 ENSG00000271798 uc064cwo.1 AJ609477 NR_002981 "15199136|16381836" SR0000286 +HGNC:32645 SNORA52 small nucleolar RNA, H/ACA box 52 non-coding RNA RNA, small nucleolar Approved 11p15.5 11p15.5 ACA52 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 619565 ENSG00000199785 uc001lrs.1 AJ609448 NR_002585 "15199136|16381836" SR0000044 +HGNC:32646 SNORA53 small nucleolar RNA, H/ACA box 53 non-coding RNA RNA, small nucleolar Approved 12q23.1 12q23.1 ACA53 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677832 ENSG00000212443 uc001tfu.2 NR_003015 "15199136|16381836" SR0000081 +HGNC:32647 SNORA54 small nucleolar RNA, H/ACA box 54 non-coding RNA RNA, small nucleolar Approved 11p15.4 11p15.4 ACA54 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677833 ENSG00000207008 uc001lxd.1 AJ609479 NR_002982 "15199136|16381836" SR0000045 +HGNC:32649 SNORA55 small nucleolar RNA, H/ACA box 55 non-coding RNA RNA, small nucleolar Approved 1p34.3 01p34.3 ACA55 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677834 ENSG00000201457 uc001cdo.2 AJ609480 NR_002983 "15199136|16381836" SR0000012 +HGNC:32650 SNORA56 small nucleolar RNA, H/ACA box 56 non-coding RNA RNA, small nucleolar Approved Xq28 Xq28 ACA56 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677835 ENSG00000206693 uc004fmo.3 AJ609449 NR_002984 "15199136|16381836" SR0000375 +HGNC:32651 SNORA57 small nucleolar RNA, H/ACA box 57 non-coding RNA RNA, small nucleolar Approved 11q12.2 11q12.2 U99 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 692158 ENSG00000206597 uc009yoa.1 AY349600 NR_004390 "15199136|16381836" SR0000053 +HGNC:32652 SNORA58 small nucleolar RNA, H/ACA box 58 non-coding RNA RNA, small nucleolar Approved 3q22.1 03q22.1 "ACA58|SNORA58B" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677836 ENSG00000249020 uc057grz.1 AJ609450 NR_002985 "15199136|16381836" RGD:7489013 SR0000309 +HGNC:32653 SNORA59A small nucleolar RNA, H/ACA box 59A non-coding RNA RNA, small nucleolar Approved 1p36.21 01p36.21 ACA59 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677885 ENSG00000239149 uc001atz.1 AJ609481 NR_003025 "15199136|16381836" SR0000241 +HGNC:32658 SNORA59B small nucleolar RNA, H/ACA box 59B non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 ACA59 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2016-10-10 677882 ENSG00000266079 OTTHUMG00000178478 uc060cmc.1 NR_003022 "15199136|16381836" SR0000001 +HGNC:32654 SNORA60 small nucleolar RNA, H/ACA box 60 non-coding RNA RNA, small nucleolar Approved 20q11.23 20q11.23 ACA60 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677837 ENSG00000199266 uc061wyo.1 AJ609469 NR_002986 "15199136|16381836" SR0000296 +HGNC:32655 SNORA61 small nucleolar RNA, H/ACA box 61 non-coding RNA RNA, small nucleolar Approved 1p35.3 01p35.3 ACA61 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-02-03 677838 ENSG00000278274 uc001bqr.2 AJ609451 NR_002987 "15199136|16381836" SR0000006 +HGNC:10107 SNORA62 small nucleolar RNA, H/ACA box 62 non-coding RNA RNA, small nucleolar Approved 3p22.1 03p22.1 "E2|E2-1" "RNE2|RNU108" RNA, U108 small nucleolar Small nucleolar RNAs, H/ACA box 846 1993-06-18 2006-04-05 2006-04-05 2013-06-27 6044 ENSG00000202363 uc064krt.1 "L07383|L22739" NR_002324 "8421699|8415643|16381836" MGI:2148179 180646 SR0000305 +HGNC:10106 SNORA63 small nucleolar RNA, H/ACA box 63 non-coding RNA RNA, small nucleolar Approved 3q27.3 03q27.3 "E3|E3-2|SNORA63A" "RNE3|RNU107" RNA, U107 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2015-10-28 6043 ENSG00000200320 uc062qoq.1 L07384 NR_002586 8421699 180647 SR0000315 +HGNC:10221 SNORA64 small nucleolar RNA, H/ACA box 64 non-coding RNA RNA, small nucleolar Approved 16p13.3 16p13.3 U64 RNU64 RNA, U64 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2013-09-05 26784 ENSG00000207405 uc064bps.1 Y11158 NR_002326 "15199136|16381836" MGI:2148175 SR0000217 +HGNC:10222 SNORA65 small nucleolar RNA, H/ACA box 65 non-coding RNA RNA, small nucleolar Approved 9q33.3 09q33.3 U65 RNU65 RNA, U65 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2013-09-05 26783 ENSG00000201302 uc004bra.2 Y11159 NR_002449 "9106664|15199136|16381836" SR0000358 +HGNC:10223 SNORA66 small nucleolar RNA, H/ACA box 66 non-coding RNA RNA, small nucleolar Approved 1p22.1 01p22.1 U66 RNU66 RNA, U66 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2013-09-05 26782 ENSG00000207523 uc009wdi.1 Y11160 NR_002444 "15199136|16381836" SR0000021 +HGNC:10224 SNORA67 small nucleolar RNA, H/ACA box 67 non-coding RNA RNA, small nucleolar Approved 17p13.1 17p13.1 U67 RNU67 RNA, U67 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2015-02-03 26781 ENSG00000277985 uc057npm.1 Y11161 NR_002912 "15199136|16381836" SR0000230 +HGNC:10225 SNORA68 small nucleolar RNA, H/ACA box 68 non-coding RNA RNA, small nucleolar Approved 19p13.11 19p13.11 "U68|SNORA68A" RNU68 RNA, U68 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2015-10-28 26780 ENSG00000207166 uc060wru.1 Y11162 NR_000012 "9106664|9182768" SR0000262 +HGNC:10226 SNORA69 small nucleolar RNA, H/ACA box 69 non-coding RNA RNA, small nucleolar Approved Xq24 Xq24 U69 RNU69 RNA, U69 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2013-09-05 26779 ENSG00000206622 uc004ery.1 Y11163 NR_002584 "9106664|15199136|16381836" SR0000371 +HGNC:10231 SNORA70 small nucleolar RNA, H/ACA box 70 non-coding RNA RNA, small nucleolar Approved Xq28 Xq28 "U70|DXS648E" RNU70 RNA, U70 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2013-09-05 26778 ENSG00000207165 uc060tcj.1 Y11164 NR_000011 "9106664|15199136" SR0000373 +HGNC:33618 SNORA70B small nucleolar RNA, H/ACA box 70B non-coding RNA RNA, small nucleolar Approved 2p15 02p15 small nucleolar RNA, H/ACA box 70B (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2007-08-24 2012-06-21 2012-06-21 100124537 ENSG00000206937 uc010fck.2 AM413014 NR_003707 SR0000468 +HGNC:33619 SNORA70C small nucleolar RNA, H/ACA box 70C non-coding RNA RNA, small nucleolar Approved 9q33.1 09q33.1 small nucleolar RNA, H/ACA box 70C (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2007-08-24 2012-06-21 2012-06-21 100124538 ENSG00000207268 uc022bmp.2 AM413015 NR_003708 SR0000469 +HGNC:34356 SNORA70D small nucleolar RNA, H/ACA box 70D non-coding RNA RNA, small nucleolar Approved 16q22.3 16q22.3 U70D small nucleolar RNA, H/ACA box 70D (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2008-07-02 2012-06-21 2015-02-03 100379141 ENSG00000263666 uc021tkx.1 NR_033337 SR0000470 +HGNC:34357 SNORA70E small nucleolar RNA, H/ACA box 70E non-coding RNA RNA, small nucleolar Approved 11q 11q U70E small nucleolar RNA, H/ACA box 70E (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2008-07-02 2012-06-21 2012-06-21 100379250 ENSG00000207221 uc021qoe.1 NR_033347 SR0000471 +HGNC:34358 SNORA70F small nucleolar RNA, H/ACA box 70F non-coding RNA RNA, small nucleolar Approved 2q24.3 02q24.3 U70F small nucleolar RNA, H/ACA box 70F (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2008-07-02 2012-06-21 2012-06-21 100337591 ENSG00000206869 uc021vrw.1 NR_033309 SR0000472 +HGNC:34359 SNORA70G small nucleolar RNA, H/ACA box 70G non-coding RNA RNA, small nucleolar Approved 12q14 12q14 U70G small nucleolar RNA, H/ACA box 70G (retrotransposed) Small nucleolar RNAs, H/ACA box 846 2008-07-02 2012-06-21 2012-06-21 100379132 ENSG00000206650 uc021rab.1 NR_033335 SR0000474 +HGNC:10232 SNORA71A small nucleolar RNA, H/ACA box 71A non-coding RNA RNA, small nucleolar Approved 20q11.23 20q11.23 U71a RNU71A RNA, U71A small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2015-02-03 26777 ENSG00000225091 uc002xim.2 Y11165 NR_002911 9106664 SR0000292 +HGNC:10233 SNORA71B small nucleolar RNA, H/ACA box 71B non-coding RNA RNA, small nucleolar Approved 20q11.23 20q11.23 U71b RNU71B RNA, U71B small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2015-02-03 26776 ENSG00000235408 OTTHUMG00000032446 uc002xik.3 Y11166 NR_002910 9106664 SR0000291 +HGNC:32656 SNORA71C small nucleolar RNA, H/ACA box 71C non-coding RNA RNA, small nucleolar Approved 20q11.23 20q11.23 U71c Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677839 ENSG00000201512 uc002xin.2 NR_003017 "15199136|16381836" SR0000293 +HGNC:32657 SNORA71D small nucleolar RNA, H/ACA box 71D non-coding RNA RNA, small nucleolar Approved 20q11.23 20q11.23 U71d Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677840 ENSG00000200354 uc002xio.2 NR_003018 "15199136|16381836" SR0000294 +HGNC:32632 SNORA71E small nucleolar RNA, H/ACA box 71E non-coding RNA RNA, small nucleolar Approved 20q11.23 20q11.23 ACA39 SNORA39 small nucleolar RNA, H/ACA box 39 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2014-04-25 2014-04-25 2015-02-03 677821 ENSG00000274309 AJ609475 NR_002972 "15199136|16381836" SR0000295 +HGNC:10234 SNORA72 small nucleolar RNA, H/ACA box 72 non-coding RNA RNA, small nucleolar Approved 8q22.2 08q22.2 U72 RNU72 RNA, U72 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2013-09-05 26775 ENSG00000207067 uc062qai.1 Y11167 NR_002581 9106664 SR0000355 +HGNC:10115 SNORA73A small nucleolar RNA, H/ACA box 73A non-coding RNA RNA, small nucleolar Approved 1p36.1 01p36.1 "U17A|E1-7|E1b|E1" "RNE1|RNU17A" RNA, U17a small nucleolar Small nucleolar RNAs, H/ACA box 846 1993-08-24 2006-04-05 2006-04-05 2015-02-03 6080 ENSG00000274266 uc057dyl.1 "S63405|L16791|L07382" NR_002907 "8335005|8421699" 180645 SR0000003 +HGNC:10116 SNORA73B small nucleolar RNA, H/ACA box 73B non-coding RNA RNA, small nucleolar Approved 1p35.3 01p35.3 "U17B|E1c" "RNU17B|RNU105A" "RNA, U17b small nucleolar|RNA, U105A small nucleolar" Small nucleolar RNAs, H/ACA box 846 1993-08-24 2006-04-05 2006-04-05 2015-07-09 26768 ENSG00000200087 uc031tvk.2 L16792 NR_004406 8335005 603239 SR0000004 +HGNC:10119 SNORA74A small nucleolar RNA, H/ACA box 74A non-coding RNA RNA, small nucleolar Approved 5q31.2 05q31.2 U19 RNU19 RNA, U19 small nucleolar Small nucleolar RNAs, H/ACA box 846 1999-12-14 2006-04-05 2006-04-05 2013-09-05 26821 ENSG00000200959 uc003ldv.2 X94290 NR_002915 "8657112|9630250" SR0000327 +HGNC:32660 SNORA74B small nucleolar RNA, H/ACA box 74B non-coding RNA RNA, small nucleolar Approved 5q35.1 05q35.1 U19-2 Small nucleolar RNAs, H/ACA box 846 2016-01-13 2016-01-13 677841 ENSG00000212402 uc003mce.2 AM055743 NR_002988 "15199136|16381836|16361266" 611331 SR0000328 +HGNC:32661 SNORA75 small nucleolar RNA, H/ACA box 75 non-coding RNA RNA, small nucleolar Approved 2q37.1 02q37.1 "U23|SNORA75A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 654321 ENSG00000206885 uc062vkw.1 AJ007015 NR_002921 "15199136|16381836" SR0000280 +HGNC:32663 SNORA77 small nucleolar RNA, H/ACA box 77 non-coding RNA RNA, small nucleolar Approved 1q32.1 01q32.1 "ACA63|SNORA77A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677843 ENSG00000221643 uc057bzj.1 NR_003019 "15199136|16381836" SR0000037 +HGNC:32664 SNORA78 small nucleolar RNA, H/ACA box 78 non-coding RNA RNA, small nucleolar Approved 16p13.3 16p13.3 ACA64 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-02-03 677844 ENSG00000273587 uc002cns.1 NR_003020 "15199136|16381836" SR0000218 +HGNC:32665 SNORA79 small nucleolar RNA, H/ACA box 79 non-coding RNA RNA, small nucleolar Approved 14q31.1 14q31.1 "ACA65|SNORA79A" Small nucleolar RNAs, H/ACA box 846 2006-04-04 2015-10-28 677845 ENSG00000221303 uc001xvi.1 NR_003021 "15199136|16381836" SR0000088 +HGNC:32666 SNORA80A small nucleolar RNA, H/ACA box 80A non-coding RNA RNA, small nucleolar Approved 21q22.11 21q22.11 ACA67 SNORA80 small nucleolar RNA, H/ACA box 80 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2014-04-25 2014-04-25 2014-04-25 677846 ENSG00000200792 NR_002996 "15199136|16381836" SR0000299 +HGNC:34355 SNORA80B small nucleolar RNA, H/ACA box 80B non-coding RNA RNA, small nucleolar Approved 2p25.1 02p25.1 ACA67B Small nucleolar RNAs, H/ACA box 846 2008-07-02 2008-07-02 100302743 ENSG00000206633 uc021vdu.1 NR_028374 SR0000467 +HGNC:32635 SNORA80E small nucleolar RNA, H/ACA box 80E non-coding RNA RNA, small nucleolar Approved 1q22 01q22 ACA42 SNORA42 small nucleolar RNA, H/ACA box 42 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2014-04-25 2014-04-25 2014-04-25 677823 ENSG00000207475 uc059tef.1 AJ609465 NR_002974 "15199136|16381836" SR0000024 +HGNC:32667 SNORA81 small nucleolar RNA, H/ACA box 81 non-coding RNA RNA, small nucleolar Approved 3q27.3 03q27.3 HBI-61 Small nucleolar RNAs, H/ACA box 846 2006-04-04 2013-09-05 677847 ENSG00000221420 uc062rfb.1 AM055745 NR_002989 "15199136|16381836|16361266" 611334 SR0000314 +HGNC:33615 SNORA84 small nucleolar RNA, H/ACA box 84 non-coding RNA RNA, small nucleolar Approved 9q22.31 09q22.31 Small nucleolar RNAs, H/ACA box 846 2007-08-24 2008-07-02 100124534 ENSG00000239183 uc064uhk.1 AM413009 NR_003704 SR0000475 +HGNC:50390 SNORA86 small nucleolar RNA, H/ACA box 86 non-coding RNA RNA, small nucleolar Approved 10p11.22 10p11.22 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106633814 NR_132768 25514182 +HGNC:50391 SNORA87 small nucleolar RNA, H/ACA box 87 non-coding RNA RNA, small nucleolar Approved 10q25.2 10q25.2 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635520 NR_132769 25514182 +HGNC:50392 SNORA88 small nucleolar RNA, H/ACA box 88 non-coding RNA RNA, small nucleolar Approved 11p13 11p13 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635521 NR_132770 25514182 +HGNC:50393 SNORA89 small nucleolar RNA, H/ACA box 89 non-coding RNA RNA, small nucleolar Approved 14q13.1 14q13.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635522 NR_132771 25514182 +HGNC:50394 SNORA90 small nucleolar RNA, H/ACA box 90 non-coding RNA RNA, small nucleolar Approved 17q12 17q12 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635523 NR_132772 25514182 +HGNC:50395 SNORA91 small nucleolar RNA, H/ACA box 91 non-coding RNA RNA, small nucleolar Approved 21q22.3 21q22.3 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635524 NR_132773 25514182 +HGNC:50396 SNORA92 small nucleolar RNA, H/ACA box 92 non-coding RNA RNA, small nucleolar Approved 22q13.1 22q13.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635525 NR_132774 25514182 +HGNC:50397 SNORA93 small nucleolar RNA, H/ACA box 93 non-coding RNA RNA, small nucleolar Approved 3p25.1 03p25.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635526 NR_132775 25514182 +HGNC:50398 SNORA94 small nucleolar RNA, H/ACA box 94 non-coding RNA RNA, small nucleolar Approved 3p21.31 03p21.31 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635528 NR_132776 25514182 +HGNC:50399 SNORA95 small nucleolar RNA, H/ACA box 95 non-coding RNA RNA, small nucleolar Approved 3p12.1 03p12.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635529 NR_132777 25514182 +HGNC:50402 SNORA98 small nucleolar RNA, H/ACA box 98 non-coding RNA RNA, small nucleolar Approved 6q24.2 06q24.2 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635530 NR_132778 25514182 +HGNC:50403 SNORA99 small nucleolar RNA, H/ACA box 99 non-coding RNA RNA, small nucleolar Approved 8p23.1 08p23.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635531 NR_132779 25514182 +HGNC:50404 SNORA100 small nucleolar RNA, H/ACA box 100 non-coding RNA RNA, small nucleolar Approved 1q44 01q44 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635532 NR_132782 25514182 +HGNC:50405 SNORA101A small nucleolar RNA, H/ACA box 101A non-coding RNA RNA, small nucleolar Approved 4q24 04q24 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2014-11-20 107399301 NR_135619 24174566 +HGNC:50406 SNORA101B small nucleolar RNA, H/ACA box 101B non-coding RNA RNA, small nucleolar Approved 14q13.2 14q13.2 ZL4 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 107399303 NR_135620 24174566 +HGNC:51395 SNORA103 small nucleolar RNA, H/ACA box 103 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635533 NR_132783 25514182 +HGNC:51396 SNORA104 small nucleolar RNA, H/ACA box 104 non-coding RNA RNA, small nucleolar Approved 19p13.12 19p13.12 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635534 NR_132784 25514182 +HGNC:51397 SNORA105A small nucleolar RNA, H/ACA box 105A non-coding RNA RNA, small nucleolar Approved 5p14.3 05p14.3 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635539 NR_132787 25514182 +HGNC:51398 SNORA105B small nucleolar RNA, H/ACA box 105B non-coding RNA RNA, small nucleolar Approved 2q33.1 02q33.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635540 NR_132788 25514182 +HGNC:51399 SNORA105C small nucleolar RNA, H/ACA box 105C non-coding RNA RNA, small nucleolar Approved 12q13.3 12q13.3 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635541 NR_132789 25514182 +HGNC:51400 SNORA107 small nucleolar RNA, H/ACA box 107 non-coding RNA RNA, small nucleolar Approved 13q31.1 13q31.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635542 NR_132852 25514182 +HGNC:51401 SNORA108 small nucleolar RNA, H/ACA box 108 non-coding RNA RNA, small nucleolar Approved 18q21.32 18q21.32 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635543 NR_132963 25514182 +HGNC:51402 SNORA109 small nucleolar RNA, H/ACA box 109 non-coding RNA RNA, small nucleolar Approved Xp11.21 Xp11.21 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635544 NR_132964 25514182 +HGNC:51403 SNORA110 small nucleolar RNA, H/ACA box 110 non-coding RNA RNA, small nucleolar Approved 1p34.1 01p34.1 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635545 NR_132966 25514182 +HGNC:51404 SNORA111 small nucleolar RNA, H/ACA box 111 non-coding RNA RNA, small nucleolar Approved 18q12.2 18q12.2 Small nucleolar RNAs, H/ACA box 846 2014-11-20 2015-09-30 106635546 NR_132967 25514182 +HGNC:51850 SNORA112 small nucleolar RNA, H/ACA box 112 non-coding RNA RNA, small nucleolar Approved 2q11.2 02q11.2 Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:51851 SNORA113 small nucleolar RNA, H/ACA box 113 non-coding RNA RNA, small nucleolar Approved 12q15 12q15 Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:51852 SNORA114 small nucleolar RNA, H/ACA box 114 non-coding RNA RNA, small nucleolar Approved 7p22.3 07p22.3 Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:51853 SNORA115 small nucleolar RNA, H/ACA box 115 non-coding RNA RNA, small nucleolar Approved 2q35 02q35 Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:51854 SNORA116 small nucleolar RNA, H/ACA box 116 non-coding RNA RNA, small nucleolar Approved 6q25.3 06q25.3 Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:51855 SNORA117 small nucleolar RNA, H/ACA box 117 non-coding RNA RNA, small nucleolar Approved 20q13.33 20q13.33 Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:51856 SNORA118 small nucleolar RNA, H/ACA box 118 non-coding RNA RNA, small nucleolar Approved 19p13.11 19p13.11 Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:51857 SNORA119 small nucleolar RNA, H/ACA box 119 non-coding RNA RNA, small nucleolar Approved Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:51858 SNORA120 small nucleolar RNA, H/ACA box 120 non-coding RNA RNA, small nucleolar Approved 12p13.31 12p13.31 Small nucleolar RNAs, H/ACA box 846 2015-09-18 2015-09-18 +HGNC:32556 SNORD1A small nucleolar RNA, C/D box 1A non-coding RNA RNA, small nucleolar Approved 17q25.1 17q25.1 "R38A|snR38A" Small nucleolar RNAs, C/D box 845 2006-04-05 2015-02-03 677848 ENSG00000278261 uc060kky.1 AJ543324 NR_004395 14960365 SR0000252 +HGNC:32676 SNORD1B small nucleolar RNA, C/D box 1B non-coding RNA RNA, small nucleolar Approved 17q25.1 17q25.1 "R38B|snR38B" Small nucleolar RNAs, C/D box 845 2006-04-05 2013-09-05 677849 ENSG00000199961 uc010dgy.2 AJ543325 NR_004396 14960365 SR0000251 +HGNC:32677 SNORD1C small nucleolar RNA, C/D box 1C non-coding RNA RNA, small nucleolar Approved 17q25.1 17q25.1 "R38C|snR38C" Small nucleolar RNAs, C/D box 845 2006-04-05 2015-02-03 677850 ENSG00000274091 uc060kkx.1 AJ543326 NR_004397 14960365 SR0000250 +HGNC:32678 SNORD2 small nucleolar RNA, C/D box 2 non-coding RNA RNA, small nucleolar Approved 3q27.3 03q27.3 "R39B|snR39B" Small nucleolar RNAs, C/D box 845 2006-04-05 2013-09-05 619567 ENSG00000238942 uc057tjj.1 NR_002587 14960365 SR0000313 +HGNC:32739 SNORD3@ small nucleolar RNA, C/D box 3 cluster non-coding RNA RNA, cluster Approved 17p11.2 17p11.2 "U3|U3A|U3B" 2006-05-11 2013-05-02 692232 "8440138|2719960" SR0000239 +HGNC:33189 SNORD3A small nucleolar RNA, C/D box 3A non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 U3 Small nucleolar RNAs, C/D box 845 2006-11-28 2015-08-03 780851 ENSG00000263934 OTTHUMG00000178445 uc021trx.2 NR_006880 9365252 180710 SR0000239 +HGNC:10168 SNORD3B-1 small nucleolar RNA, C/D box 3B-1 non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 "U3a|U3b1|U3b2" RNU3A1 RNA, U3A1 small nucleolar, RNA, U3A1 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-11-28 2006-11-28 2016-07-20 26851 ENSG00000265185 OTTHUMG00000178499 uc060cic.1 "AF020534|AF020533|AF020532" NR_003271 9365252 SR0000236 +HGNC:33190 SNORD3B-2 small nucleolar RNA, C/D box 3B-2 non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 "U3-2B|U3b2" Small nucleolar RNAs, C/D box 845 2006-11-28 2015-08-03 780852 ENSG00000262074 OTTHUMG00000178152 uc060cid.1 NR_003924 9365252 SR0000237 +HGNC:33191 SNORD3C small nucleolar RNA, C/D box 3C non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 U3-3 Small nucleolar RNAs, C/D box 845 2006-11-28 2016-07-20 780853 ENSG00000264940 OTTHUMG00000178446 uc021try.2 NR_006881 9365252 SR0000240 +HGNC:33192 SNORD3D small nucleolar RNA, C/D box 3D non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 U3-4 Small nucleolar RNAs, C/D box 845 2006-11-28 2015-02-05 780854 ENSG00000277947 uc060cim.1 NR_006882 9365252 SR0000238 +HGNC:10097 SNORD4A small nucleolar RNA, C/D box 4A non-coding RNA RNA, small nucleolar Approved 17q11 17q11 "Z17A|mgh18S-121" RNU101A RNA, U101A small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-04-20 2006-04-20 2013-09-05 26773 ENSG00000238578 uc002hcl.2 AJ224024 NR_000010 9417910 SR0000243 +HGNC:10098 SNORD4B small nucleolar RNA, C/D box 4B non-coding RNA RNA, small nucleolar Approved 17q11 17q11 Z17B RNU101B RNA, U101B small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-04-20 2006-04-20 2013-09-05 26772 ENSG00000238597 uc060ddt.1 AJ224025 NR_000009 9417910 SR0000376 +HGNC:32702 SNORD5 small nucleolar RNA, C/D box 5 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 mgh28S-2410 Small nucleolar RNAs, C/D box 845 2006-04-25 2013-09-05 692072 ENSG00000239195 uc064quc.1 AJ609488 NR_003033 15199136 SR0000070 +HGNC:32703 SNORD6 small nucleolar RNA, C/D box 6 non-coding RNA RNA, small nucleolar Approved 11q21 11q21 mgh28S-2412 Small nucleolar RNAs, C/D box 845 2006-04-27 2013-09-05 692075 ENSG00000202314 uc058gnj.1 AJ609489 NR_003036 15199136 SR0000067 +HGNC:32704 SNORD7 small nucleolar RNA, C/D box 7 non-coding RNA RNA, small nucleolar Approved 17q12 17q12 "Z30|mgU6-47" Small nucleolar RNAs, C/D box 845 2006-04-27 2013-09-05 692076 ENSG00000207297 uc002hjo.1 AJ007733 NR_003037 11842100 SR0000245 +HGNC:20159 SNORD8 small nucleolar RNA, C/D box 8 non-coding RNA RNA, small nucleolar Approved 14q11.2 14q11.2 mgU6-53 RNU6C RNA, U6C small nucleolar Small nucleolar RNAs, C/D box 845 2003-01-13 2006-04-27 2006-04-27 2013-09-05 319103 ENSG00000200785 uc001wau.2 AJ243222 NR_002916 10490628 SR0000087 +HGNC:32705 SNORD9 small nucleolar RNA, C/D box 9 non-coding RNA RNA, small nucleolar Approved 14q11.2 14q11.2 mgU6-53B Small nucleolar RNAs, C/D box 845 2006-04-27 2013-09-05 692053 ENSG00000199436 uc001wat.2 NR_003029.2 10490628 SR0000086 +HGNC:32706 SNORD10 small nucleolar RNA, C/D box 10 non-coding RNA RNA, small nucleolar Approved 17p13.1 17p13.1 mgU6-77 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 652966 ENSG00000238917 uc060arw.1 NR_002604.2 SR0000229 +HGNC:32707 SNORD11 small nucleolar RNA, C/D box 11 non-coding RNA RNA, small nucleolar Approved 2q33.1 02q33.1 HBII-95 Small nucleolar RNAs, C/D box 845 2006-04-27 2007-08-01 2007-08-01 2013-09-05 692058 ENSG00000238317 uc002uzd.1 NR_003031 11387227 SR0000277 +HGNC:33571 SNORD11B small nucleolar RNA, C/D box 11B non-coding RNA RNA, small nucleolar Approved 2q33.1 02q33.1 Small nucleolar RNAs, C/D box 845 2007-07-31 2015-02-03 100113392 ENSG00000271852 uc010ftq.2 AM413022 NR_003694 SR0000478 +HGNC:32708 SNORD12 small nucleolar RNA, C/D box 12 non-coding RNA RNA, small nucleolar Approved 20q13.13 20q13.13 "HBII-99|hsa-mir-1259" "MIR1259|MIRN1259" microRNA 1259 Small nucleolar RNAs, C/D box 845 2006-04-27 2014-11-19 692057 ENSG00000212304 uc002xup.1 NR_003030 11387227 SR0000298 +HGNC:33573 SNORD12B small nucleolar RNA, C/D box 12B non-coding RNA RNA, small nucleolar Approved 19p13.2 19p13.2 Small nucleolar RNAs, C/D box 845 2007-07-31 2010-07-02 100113393 ENSG00000222365 uc010gia.2 AM413026 NR_003695 SR0000480 +HGNC:10105 SNORD12C small nucleolar RNA, C/D box 12C non-coding RNA RNA, small nucleolar Approved 20q13.13 20q13.13 U106 "RNU106|SNORD106" "RNA, U106 small nucleolar|small nucleolar RNA, C/D box 106" Small nucleolar RNAs, C/D box 845 1999-12-14 2007-07-31 2007-07-31 2013-09-05 26765 ENSG00000209042 uc010ghz.4 AY349607 NR_002433 14602913 SR0000297 +HGNC:32711 SNORD13 small nucleolar RNA, C/D box 13 non-coding RNA RNA, small nucleolar Approved 8p12 08p12 "U13|RNU13|SNORD13A" Small nucleolar RNAs, C/D box 845 2006-05-02 2015-11-11 692084 ENSG00000239039 uc033bhd.1 NR_003041 2531075 616664 SR0000352 +HGNC:10110 SNORD13P1 small nucleolar RNA, C/D box 13 pseudogene 1 pseudogene pseudogene Approved 22q13.2 22q13.2 "U13|U13.32A" RNU13P1 RNA, U13 small nuclear pseudogene 1 1992-02-12 2010-02-02 2011-08-22 2015-02-09 6076 ENSG00000238498 uc062etu.1 X58061 NG_008259 1748306 +HGNC:10111 SNORD13P2 small nucleolar RNA, C/D box 13 pseudogene 2 pseudogene pseudogene Approved 7p22.1 07p22.1 "U13|U13.12A" RNU13P2 RNA, U13 small nuclear pseudogene 2 1992-02-12 2010-02-02 2010-02-02 2011-08-22 6077 X58060 NG_008260 1748306 +HGNC:10112 SNORD13P3 small nucleolar RNA, C/D box 13 pseudogene 3 pseudogene pseudogene Approved 3p21.31 03p21.31 "U13|U13.4B" RNU13P3 RNA, U13 small nuclear pseudogene 3 1992-02-12 2010-02-02 2010-02-02 2015-11-11 6078 ENSG00000239128 uc062jck.1 X58062 NG_008261 1748306 +HGNC:10113 SNORD14A small nucleolar RNA, C/D box 14A non-coding RNA RNA, small nucleolar Approved 11p15.1 11p15.1 "U14|RNU14A" RNU14 RNA, U14 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-02 2006-05-02 2015-02-03 26822 ENSG00000272034 uc021qei.3 D88010 NR_000022 8920921 SR0000051 +HGNC:31803 SNORD14B small nucleolar RNA, C/D box 14B non-coding RNA RNA, small nucleolar Approved 11p15.1 11p15.1 "U14B|U14" RNU14B RNA, U14B small nucleolar Small nucleolar RNAs, C/D box 845 2004-08-26 2006-05-02 2006-05-02 2013-09-05 85388 ENSG00000201403 uc057zln.1 D88010 NR_001452 8920921 SR0000050 +HGNC:30352 SNORD14C small nucleolar RNA, C/D box 14C non-coding RNA RNA, small nucleolar Approved 11q23.3-q25 11q23.3-q25 Small nucleolar RNAs, C/D box 845 2009-08-11 2010-03-29 85389 ENSG00000202252 uc031yig.1 Y00371 NR_001453 "2251119|3037489" +HGNC:30353 SNORD14D small nucleolar RNA, C/D box 14D non-coding RNA RNA, small nucleolar Approved 11q23.3-q25 11q23.3-q25 Small nucleolar RNAs, C/D box 845 2009-08-11 2009-08-11 85390 ENSG00000207118 uc031yif.1 Y00371 NR_001454 "2251119|3037489" +HGNC:30354 SNORD14E small nucleolar RNA, C/D box 14E non-coding RNA RNA, small nucleolar Approved 11q23.3-q25 11q23.3-q25 Small nucleolar RNAs, C/D box 845 2009-08-11 2010-03-29 85391 ENSG00000200879 uc031yie.2 Y00371 NR_001455 "2251119|3037489" +HGNC:10114 SNORD15A small nucleolar RNA, C/D box 15A non-coding RNA RNA, small nucleolar Approved 11q13.4 11q13.4 U15A RNU15A RNA, U15a small nucleolar Small nucleolar RNAs, C/D box 845 1994-07-05 2006-05-02 2006-05-02 2013-09-05 6079 ENSG00000206941 uc001owj.1 L15616 NR_000005 "7789996|8319909" 600455 SR0000062 +HGNC:16649 SNORD15B small nucleolar RNA, C/D box 15B non-coding RNA RNA, small nucleolar Approved 11q13.4 11q13.4 U15B RNU15B RNA, U15b small nucleolar Small nucleolar RNAs, C/D box 845 2001-09-21 2006-05-02 2006-05-02 2013-09-05 114599 ENSG00000207445 uc001owl.1 L15557 NR_000025 "7789996|8319909" SR0000063 +HGNC:32712 SNORD16 small nucleolar RNA, C/D box 16 non-coding RNA RNA, small nucleolar Approved 15q22.31 15q22.31 U16 Small nucleolar RNAs, C/D box 845 2006-05-02 2013-09-05 595097 ENSG00000199673 uc059knp.1 NR_002440 8335006 SR0000213 +HGNC:32713 SNORD17 small nucleolar RNA, C/D box 17 non-coding RNA RNA, small nucleolar Approved 20p11.23 20p11.23 HBI-43 Small nucleolar RNAs, C/D box 845 2006-05-02 2013-09-05 692086 ENSG00000212232 uc002wqf.1 NR_003045 11387227 SR0000290 +HGNC:32714 SNORD18A small nucleolar RNA, C/D box 18A non-coding RNA RNA, small nucleolar Approved 15q22.31 15q22.31 U18A Small nucleolar RNAs, C/D box 845 2006-05-02 2013-09-05 595098 ENSG00000200623 uc059knr.1 NR_002441 "7507233|8674114" SR0000214 +HGNC:32715 SNORD18B small nucleolar RNA, C/D box 18B non-coding RNA RNA, small nucleolar Approved 15q22.31 15q22.31 U18B Small nucleolar RNAs, C/D box 845 2006-05-02 2013-09-05 595099 ENSG00000202529 uc059knn.1 NR_002442 "7507233|8674114" SR0000212 +HGNC:32716 SNORD18C small nucleolar RNA, C/D box 18C non-coding RNA RNA, small nucleolar Approved 15q22.31 15q22.31 U18C Small nucleolar RNAs, C/D box 845 2006-05-02 2013-09-05 595100 ENSG00000199574 uc059kni.1 NR_002443 "7507233|8674114" SR0000211 +HGNC:32717 SNORD19 small nucleolar RNA, C/D box 19 non-coding RNA RNA, small nucleolar Approved 3p21.1 03p21.1 HBII-108 Small nucleolar RNAs, C/D box 845 2006-05-02 2007-08-01 2007-08-01 2013-09-05 692089 ENSG00000212493 uc003dfg.2 AC104446 NR_003047 11387227 SR0000306 +HGNC:33570 SNORD19B small nucleolar RNA, C/D box 19B non-coding RNA RNA, small nucleolar Approved 3p21.1 03p21.1 Small nucleolar RNAs, C/D box 845 2007-07-31 2008-07-02 100113381 ENSG00000238862 uc062koq.1 AM413023 NR_003687 SR0000484 +HGNC:10143 SNORD20 small nucleolar RNA, C/D box 20 non-coding RNA RNA, small nucleolar Approved 2q37.1 02q37.1 U20 RNU20 RNA, U20 small nucleolar Small nucleolar RNAs, C/D box 845 1994-12-20 2006-05-02 2006-05-02 2006-05-02 6082 ENSG00000207280 uc002vrw.1 Z34290 NR_002908 8065311 604012 SR0000281 +HGNC:10144 SNORD21 small nucleolar RNA, C/D box 21 non-coding RNA RNA, small nucleolar Approved 1p22.1 01p22.1 U21 RNU21 RNA, U21 small nucleolar Small nucleolar RNAs, C/D box 845 1995-09-07 2006-05-02 2006-05-02 2006-05-02 6083 ENSG00000206680 uc001dpe.2 Z35312 NR_000006 7937132 603635 SR0000020 +HGNC:10145 SNORD22 small nucleolar RNA, C/D box 22 non-coding RNA RNA, small nucleolar Approved 11q13 11q13 U22 RNU22 RNA, U22 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-02 2006-05-02 2015-02-03 9304 ENSG00000277194 uc001nvv.2 NR_000008 "9387929|8559254" 603223 SR0000054 +HGNC:32718 SNORD23 small nucleolar RNA, C/D box 23 non-coding RNA RNA, small nucleolar Approved 19q13.32 19q13.32 HBII-115 Small nucleolar RNAs, C/D box 845 2006-05-02 2006-05-02 2013-09-05 692091 ENSG00000221803 uc060ntz.1 AC008745 NR_003048 11387227 SR0000263 +HGNC:10146 SNORD24 small nucleolar RNA, C/D box 24 non-coding RNA RNA, small nucleolar Approved 9q34.2 09q34.2 U24 RNU24 RNA, U24 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-02 2006-05-02 2013-09-05 26820 ENSG00000206611 uc010nah.3 Z48765 NR_002447 8482538 SR0000361 +HGNC:10147 SNORD25 small nucleolar RNA, C/D box 25 non-coding RNA RNA, small nucleolar Approved 11q13 11q13 U25 RNU25 RNA, U25 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-02-03 9303 ENSG00000275043 uc058cpm.1 AF081279 NR_002565 9387929 603224 SR0000061 +HGNC:10148 SNORD26 small nucleolar RNA, C/D box 26 non-coding RNA RNA, small nucleolar Approved 11q12.3 11q12.3 U26 RNU26 RNA, U26 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-02-03 9302 ENSG00000276788 uc009yok.1 NR_002564 8559254 603225 SR0000060 +HGNC:10149 SNORD27 small nucleolar RNA, C/D box 27 non-coding RNA RNA, small nucleolar Approved 11q12.3 11q12.3 U27 RNU27 RNA, U27 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-02-03 9301 ENSG00000275996 uc058vuv.1 NR_002563 8559254 603226 SR0000059 +HGNC:10150 SNORD28 small nucleolar RNA, C/D box 28 non-coding RNA RNA, small nucleolar Approved 11q12.3 11q12.3 "U28|SNORD28A" RNU28 RNA, U28 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-10-28 9300 ENSG00000274544 uc063sly.1 U40580 NR_002562 8559254 603227 SR0000058 +HGNC:10151 SNORD29 small nucleolar RNA, C/D box 29 non-coding RNA RNA, small nucleolar Approved 11q12.3 11q12.3 U29 RNU29 RNA, U29 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-01-29 9297 uc063cpk.1 U40580 NR_002559 8559254 603228 SR0000057 +HGNC:10157 SNORD30 small nucleolar RNA, C/D box 30 non-coding RNA RNA, small nucleolar Approved 11q12.3 11q12.3 U30 RNU30 RNA, U30 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-02-03 9299 ENSG00000277846 uc065aud.1 U40580 NR_002561 8559254 603229 SR0000056 +HGNC:10158 SNORD31 small nucleolar RNA, C/D box 31 non-coding RNA RNA, small nucleolar Approved 11q12.3 11q12.3 "U31|SNORD31A" RNU31 RNA, U31 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-10-28 9298 uc021rmj.1 U40580 NR_002560 8559254 603230 SR0000055 +HGNC:10159 SNORD32A small nucleolar RNA, C/D box 32A non-coding RNA RNA, small nucleolar Approved 19q13.33 19q13.33 "U32|U32A" RNU32 RNA, U32 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26819 ENSG00000201675 uc061bed.1 X94598 NR_000021 MGI:1351324 SR0000264 +HGNC:32719 SNORD32B small nucleolar RNA, C/D box 32B non-coding RNA RNA, small nucleolar Approved 6p22.1 06p22.1 U32B Small nucleolar RNAs, C/D box 845 2006-05-03 2013-09-05 692092 ENSG00000201330 uc003nmq.4 AL645936 NR_003049 8764399 SR0000331 +HGNC:10160 SNORD33 small nucleolar RNA, C/D box 33 non-coding RNA RNA, small nucleolar Approved 19q13.33 19q13.33 U33 RNU33 RNA, U33 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26818 ENSG00000199631 uc061bef.1 X94599 NR_000020 "8764399|10580157" MGI:1351323 SR0000265 +HGNC:10161 SNORD34 small nucleolar RNA, C/D box 34 non-coding RNA RNA, small nucleolar Approved 19q13.33 19q13.33 U34 RNU34 RNA, U34 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26817 ENSG00000202503 uc061bei.1 X94600 NR_000019 MGI:1351325 SR0000266 +HGNC:10162 SNORD35A small nucleolar RNA, C/D box 35A non-coding RNA RNA, small nucleolar Approved 19q13.33 19q13.33 "U35|RNU35A" RNU35 RNA, U35 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26816 ENSG00000200259 uc010enb.1 X94601 NR_000018 8764399 SR0000267 +HGNC:17365 SNORD35B small nucleolar RNA, C/D box 35B non-coding RNA RNA, small nucleolar Approved 19q13.33 19q13.33 U35B RNU35B RNA, U35B small nucleolar Small nucleolar RNAs, C/D box 845 2003-02-27 2006-05-03 2006-05-03 2013-09-05 84546 ENSG00000200530 uc061beq.1 AB028893 NR_001285 10580157 MGI:1351321 SR0000268 +HGNC:10163 SNORD36A small nucleolar RNA, C/D box 36A non-coding RNA RNA, small nucleolar Approved 9q34.2 09q34.2 U36a RNU36A RNA, U36A small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26815 ENSG00000199744 uc064wur.1 AJ003040 NR_002448 9703018 SR0000363 +HGNC:10164 SNORD36B small nucleolar RNA, C/D box 36B non-coding RNA RNA, small nucleolar Approved 9q34.2 09q34.2 U36b RNU36B RNA, U36B small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26814 ENSG00000200831 uc064wuq.1 AJ003039 NR_000017 9703018 SR0000362 +HGNC:10165 SNORD36C small nucleolar RNA, C/D box 36C non-coding RNA RNA, small nucleolar Approved 9q34.2 09q34.2 U36c RNU36C RNA, U36C small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26813 ENSG00000252542 uc010nak.4 AJ003041 NR_000016 9703018 SR0000364 +HGNC:10166 SNORD37 small nucleolar RNA, C/D box 37 non-coding RNA RNA, small nucleolar Approved 19p13.3 19p13.3 U37 RNU37 RNA, U37 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26812 ENSG00000206775 uc002lzf.1 X94602 NR_002602 8764399 SR0000259 +HGNC:30355 SNORD38A small nucleolar RNA, C/D box 38A non-coding RNA RNA, small nucleolar Approved 1p34.1 01p34.1 U38A RNU38A RNA, U38A small nucleolar Small nucleolar RNAs, C/D box 845 2004-05-20 2006-05-03 2006-05-03 2010-03-29 94162 ENSG00000202031 uc009vxi.4 NR_001456 8764399 SR0000015 +HGNC:30356 SNORD38B small nucleolar RNA, C/D box 38B non-coding RNA RNA, small nucleolar Approved 1p34.1 01p34.1 U38B RNU38B RNA, U38B small nucleolar Small nucleolar RNAs, C/D box 845 2004-05-20 2006-05-03 2006-05-03 2010-03-29 94163 ENSG00000207421 uc057fwg.1 NR_001457 8764399 SR0000016 +HGNC:10179 SNORD41 small nucleolar RNA, C/D box 41 non-coding RNA RNA, small nucleolar Approved 19p13.13 19p13.13 U41 RNU41 RNA, U41 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26810 ENSG00000209702 uc002mut.1 X96640 NR_002751 8674114 SR0000261 +HGNC:10180 SNORD42A small nucleolar RNA, C/D box 42A non-coding RNA RNA, small nucleolar Approved 17q11.2 17q11.2 U42 RNU42A RNA, U42A small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26809 ENSG00000238649 uc060dds.1 X96641 NR_000014 8674114 SR0000244 +HGNC:10181 SNORD42B small nucleolar RNA, C/D box 42B non-coding RNA RNA, small nucleolar Approved 17q11.2 17q11.2 U42B RNU42B RNA, U42B small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26808 ENSG00000238423 uc002hcj.1 AJ224023 NR_000013 9417910 SR0000242 +HGNC:10182 SNORD43 small nucleolar RNA, C/D box 43 non-coding RNA RNA, small nucleolar Approved 22q13.1 22q13.1 U43 RNU43 RNA, U43 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-07-05 2013-09-05 26807 ENSG00000263764 uc062ekw.1 X96642 NR_002439 8674114 611068 SR0000302 +HGNC:10183 SNORD44 small nucleolar RNA, C/D box 44 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 U44 RNU44 RNA, U44 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26806 uc058yiu.1 X96643 NR_002750 8674114 SR0000031 +HGNC:10184 SNORD45A small nucleolar RNA, C/D box 45A non-coding RNA RNA, small nucleolar Approved 1p31.1 01p31.1 U45a RNU45A RNA, U45A small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26805 ENSG00000207241 uc009wbu.1 X96644 NR_002749 8674114 SR0000018 +HGNC:10185 SNORD45B small nucleolar RNA, C/D box 45B non-coding RNA RNA, small nucleolar Approved 1p31.1 01p31.1 U45b RNU45B RNA, U45B small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26804 ENSG00000201487 uc057hsh.1 X96645 NR_002748 8674114 SR0000019 +HGNC:32720 SNORD45C small nucleolar RNA, C/D box 45C non-coding RNA RNA, small nucleolar Approved 1p31.1 01p31.1 U45C Small nucleolar RNAs, C/D box 845 2006-05-03 2013-09-05 692085 ENSG00000206620 uc057hse.1 AL357314 NR_003042 8674114 SR0000017 +HGNC:10186 SNORD46 small nucleolar RNA, C/D box 46 non-coding RNA RNA, small nucleolar Approved 1p34.1 01p34.1 "U46|U40" "RNU46|RNU40" "RNA, U46 small nuclear|RNA, U40 small nuclear" Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2014-11-19 94161 ENSG00000200913 uc001cmk.2 X96646 NR_000024 "8674114|8764399" SR0000014 +HGNC:10187 SNORD47 small nucleolar RNA, C/D box 47 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 U47 RNU47 RNA, U47 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-01-29 26802 X96647 NR_002746 8674114 SR0000027 +HGNC:10188 SNORD48 small nucleolar RNA, C/D box 48 non-coding RNA RNA, small nucleolar Approved 6p21.33 06p21.33 U48 RNU48 RNA, U48 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2013-09-05 26801 ENSG00000201823 uc003nxo.1 X96648 NR_002745 8674114 SR0000335 +HGNC:10189 SNORD49A small nucleolar RNA, C/D box 49A non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 "U49|U49A" RNU49 RNA, U49 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-02-05 26800 ENSG00000277370 uc010cpg.1 X96649 NR_002744 8674114 SR0000234 +HGNC:32721 SNORD49B small nucleolar RNA, C/D box 49B non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 U49B Small nucleolar RNAs, C/D box 845 2006-05-03 2015-02-05 692087 ENSG00000277108 uc060btg.1 AC093484 NR_003043 8674114 SR0000233 +HGNC:10200 SNORD50A small nucleolar RNA, C/D box 50A non-coding RNA RNA, small nucleolar Approved 6q14.3 06q14.3 U50 RNU50 RNA, U50 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-03 2006-05-03 2015-01-29 26799 uc003ple.2 "X96662|AB017710" NR_002743 8674114 613117 SR0000337 +HGNC:32722 SNORD50B small nucleolar RNA, C/D box 50B non-coding RNA RNA, small nucleolar Approved 6q14.3 06q14.3 U50B Small nucleolar RNAs, C/D box 845 2006-05-03 2015-02-05 692088 ENSG00000275072 uc063pyc.1 AB017710 NR_003044 10792466 613264 SR0000338 +HGNC:10201 SNORD51 small nucleolar RNA, C/D box 51 non-coding RNA RNA, small nucleolar Approved 2q33.3 02q33.3 U51 RNU51 RNA, U51 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2013-09-05 26798 ENSG00000207047 uc059fut.1 X96650 NR_002589 8674114 SR0000278 +HGNC:10202 SNORD52 small nucleolar RNA, C/D box 52 non-coding RNA RNA, small nucleolar Approved 6p21.33 06p21.33 U52 RNU52 RNA, U52 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2013-09-05 26797 ENSG00000201754 uc063nij.1 X96651 NR_002742 8674114 SR0000336 +HGNC:10203 SNORD53 small nucleolar RNA, C/D box 53 non-coding RNA RNA, small nucleolar Approved 2p23.2 02p23.2 "U53|SNORD53A" RNU53 RNA, U53 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2015-10-29 26796 ENSG00000265145 uc002rmq.2 X96652 NR_002741 8674114 SR0000273 +HGNC:10204 SNORD54 small nucleolar RNA, C/D box 54 non-coding RNA RNA, small nucleolar Approved 8q12.1 08q12.1 U54 RNU54 RNA, U54 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2013-09-05 26795 ENSG00000238650 uc064mym.1 X96653 NR_002437 8674114 SR0000353 +HGNC:10205 SNORD55 small nucleolar RNA, C/D box 55 non-coding RNA RNA, small nucleolar Approved 1p34.1 01p34.1 "U55|U39" "RNU55|RNU39|SNORD39" "RNA, U55 small nuclear|RNA, U39 small nucleolar|small nucleolar RNA, C/D box 39" Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2014-11-19 26811 ENSG00000264294 uc057fwc.1 X96654 NR_000015 "8674114|8764399" SR0000013 +HGNC:10206 SNORD56 small nucleolar RNA, C/D box 56 non-coding RNA RNA, small nucleolar Approved 20p13 20p13 U56 RNU56 RNA, U56 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2014-11-19 26793 ENSG00000229686 OTTHUMG00000031704 uc062clv.1 X96655 NR_002739 8674114 SR0000288 +HGNC:19771 SNORD56B small nucleolar RNA, C/D box 56B non-coding RNA RNA, small nucleolar Approved 14q24.2 14q24.2 RNU56B RNA, U56B small nuclear 2003-01-13 2008-05-02 2008-05-02 2011-09-15 319139 ENSG00000207444 uc001xmq.3 NR_001276 +HGNC:10207 SNORD57 small nucleolar RNA, C/D box 57 non-coding RNA RNA, small nucleolar Approved 20p13 20p13 U57 RNU57 RNA, U57 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2014-11-19 26792 ENSG00000226572 OTTHUMG00000031705 uc061vbj.1 X96656 NR_002738 8674114 SR0000289 +HGNC:10208 SNORD58A small nucleolar RNA, C/D box 58A non-coding RNA RNA, small nucleolar Approved 18q21.1 18q21.1 U58a RNU58A RNA, U58A small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2013-09-05 26791 ENSG00000206602 uc002lds.1 X96657 NR_002571 8674114 SR0000254 +HGNC:10209 SNORD58B small nucleolar RNA, C/D box 58B non-coding RNA RNA, small nucleolar Approved 18q21.1 18q21.1 U58b RNU58B RNA, U58B small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2015-02-06 26790 ENSG00000271982 uc002ldt.2 X96658 NR_002572 8674114 SR0000255 +HGNC:33613 SNORD58C small nucleolar RNA, C/D box 58C non-coding RNA RNA, small nucleolar Approved 18q21.1 18q21.1 Small nucleolar RNAs, C/D box 845 2007-08-21 2008-07-02 100124516 ENSG00000202093 uc060pbm.1 AM413028 NR_003701 SR0000483 +HGNC:10210 SNORD59A small nucleolar RNA, C/D box 59A non-coding RNA RNA, small nucleolar Approved 12p13.3 12p13.3 U59 RNU59 RNA, U59 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2013-09-05 26789 ENSG00000207031 uc001slt.1 X96659 NR_002737 8674114 SR0000080 +HGNC:32723 SNORD59B small nucleolar RNA, C/D box 59B non-coding RNA RNA, small nucleolar Approved 12q13.3 12q13.3 U59B Small nucleolar RNAs, C/D box 845 2006-05-04 2013-09-05 692090 NR_003046 8674114 SR0000079 +HGNC:10217 SNORD60 small nucleolar RNA, C/D box 60 non-coding RNA RNA, small nucleolar Approved 16p13.3 16p13.3 U60 RNU60 RNA, U60 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2013-09-05 26788 ENSG00000206630 uc057wtw.1 X96660 NR_002736 8674114 SR0000219 +HGNC:10218 SNORD61 small nucleolar RNA, C/D box 61 non-coding RNA RNA, small nucleolar Approved Xq26.3 Xq26.3 "U61|HBII-342" RNU61 RNA, U61 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-04 2006-05-04 2013-09-05 26787 ENSG00000206979 uc004fah.1 X96661 NR_002735 "8674114|11387227" MGI:2148805 SR0000372 +HGNC:10219 SNORD62A small nucleolar RNA, C/D box 62A non-coding RNA RNA, small nucleolar Approved 9q34.13 09q34.13 "U62|U62A" RNU62 RNA, U62 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-05 2006-05-05 2015-02-06 26786 ENSG00000235284 uc004caq.3 U72851 NR_002914 8962077 SR0000359 +HGNC:23031 SNORD62B small nucleolar RNA, C/D box 62B non-coding RNA RNA, small nucleolar Approved 9q34.13 09q34.13 "U62|U62B" Small nucleolar RNAs, C/D box 845 2006-05-05 2015-02-06 692093 ENSG00000231587 uc004car.3 NR_003050 SR0000360 +HGNC:10220 SNORD63 small nucleolar RNA, C/D box 63 non-coding RNA RNA, small nucleolar Approved 5q31.2 05q31.2 "U63|SNORD63A" RNU63 RNA, U63 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-05 2006-05-05 2015-10-29 26785 ENSG00000206989 uc003ldg.3 U72852 NR_002913 8962077 SR0000326 +HGNC:32725 SNORD64 small nucleolar RNA, C/D box 64 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-13 Small nucleolar RNAs, C/D box 845 2006-05-08 2015-02-06 347686 ENSG00000276610 uc057mho.1 NR_001294 11106375 SR0000133 +HGNC:32726 SNORD65 small nucleolar RNA, C/D box 65 non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 "HBII-135|SNORD65A" Small nucleolar RNAs, C/D box 845 2006-05-08 2015-10-29 692106 ENSG00000277512 uc063bek.1 AC093484 NR_003054 11387227 SR0000235 +HGNC:32727 SNORD66 small nucleolar RNA, C/D box 66 non-coding RNA RNA, small nucleolar Approved 3q27.1 03q27.1 HBII-142 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692107 ENSG00000212158 uc003fnz.3 AC078797 NR_003055 11387227 SR0000312 +HGNC:32728 SNORD67 small nucleolar RNA, C/D box 67 non-coding RNA RNA, small nucleolar Approved 11p11.2 11p11.2 HBII-166 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692108 ENSG00000212135 uc001ndk.3 AC115088 NR_003056 11387227 SR0000052 +HGNC:32729 SNORD68 small nucleolar RNA, C/D box 68 non-coding RNA RNA, small nucleolar Approved 16q24.3 16q24.3 HBII-202 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 606500 ENSG00000200084 uc059ypa.1 NR_002450 "11387227|2247610" SR0000225 +HGNC:32730 SNORD69 small nucleolar RNA, C/D box 69 non-coding RNA RNA, small nucleolar Approved 3p21.1 03p21.1 HBII-210 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692109 ENSG00000212452 uc003dfh.1 AC104446 NR_003057 11387227 SR0000307 +HGNC:32731 SNORD70 small nucleolar RNA, C/D box 70 non-coding RNA RNA, small nucleolar Approved 2q33.1 02q33.1 "HBII-234|SNORD70A" Small nucleolar RNAs, C/D box 845 2006-05-08 2015-10-29 692110 ENSG00000212534 uc021vvh.1 AC064836 NR_003058 11387227 SR0000276 +HGNC:32732 SNORD71 small nucleolar RNA, C/D box 71 non-coding RNA RNA, small nucleolar Approved 16q22.2 16q22.2 "HBII-239|hsa-mir-768" MIRN768 microRNA 768 Small nucleolar RNAs, C/D box 845 2006-05-08 2014-11-19 692111 ENSG00000223224 uc002fbc.1 AC010653 NR_003059 11387227 SR0000224 +HGNC:32733 SNORD72 small nucleolar RNA, C/D box 72 non-coding RNA RNA, small nucleolar Approved 5p13.1 05p13.1 HBII-240 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 619564 ENSG00000212296 uc003jmf.1 NR_002583 11387227 SR0000322 +HGNC:10235 SNORD73A small nucleolar RNA, C/D box 73A non-coding RNA RNA, small nucleolar Approved 4q31.3 04q31.3 "U73a|RNU73A" RNU73 RNA, U73 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-05 2006-05-05 2013-09-05 8944 ENSG00000208797 uc003ima.1 Z83330 NR_000007 9573378 603568 SR0000321 +HGNC:30357 SNORD73B small nucleolar RNA, C/D box U73B (pseudogene) pseudogene pseudogene Approved 4q31.3 04q31.3 U73B RNU73B RNA, U73B small nucleolar pseudogene Small nucleolar RNAs, C/D box 845 2004-08-26 2006-05-05 2011-04-15 2015-10-29 114655 ENSG00000201264 X87373 NG_000961 "9573378|8647443" SR0000320 +HGNC:32734 SNORD74 small nucleolar RNA, C/D box 74 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 "U74|Z18|SNORD74A" Small nucleolar RNAs, C/D box 845 2006-05-08 2015-10-29 619498 uc059mvp.1 "AF141346|AJ224026" NR_002579 15556860 SR0000035 +HGNC:32735 SNORD75 small nucleolar RNA, C/D box 75 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 U75 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692195 uc021vgl.1 AF141346 NR_003941 "15556860|9819378" SR0000034 +HGNC:32736 SNORD76 small nucleolar RNA, C/D box 76 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 U76 Small nucleolar RNAs, C/D box 845 2006-05-08 2015-01-29 692196 AF141346 NR_003942 "15556860|9819378" SR0000033 +HGNC:32737 SNORD77 small nucleolar RNA, C/D box 77 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 "U77|SNORD77A" Small nucleolar RNAs, C/D box 845 2006-05-08 2015-10-29 692197 uc059liu.1 AF141346 NR_003943 "15556860|9819378" SR0000032 +HGNC:32738 SNORD78 small nucleolar RNA, C/D box 78 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 U78 Small nucleolar RNAs, C/D box 845 2006-05-08 2015-01-29 692198 uc061jji.1 AF141346 NR_003944 "15556860|9819378" SR0000030 +HGNC:10100 SNORD79 small nucleolar RNA, C/D box 79 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 "Z22|U79" RNU103 RNA, U103 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-08 2006-05-08 2015-01-29 26770 uc063bhu.1 "AJ224027|AF141346" NR_003939 "15556860|9819378" SR0000029 +HGNC:10096 SNORD80 small nucleolar RNA, C/D box 80 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 "Z15|U80" RNU100 RNA, U100 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-08 2006-05-08 2015-01-29 26774 "AJ224022|AF141346" NR_003940 "15556860|9819378" SR0000028 +HGNC:10101 SNORD81 small nucleolar RNA, C/D box 81 non-coding RNA RNA, small nucleolar Approved 1q25.1 01q25.1 "Z23|U81" RNU104 RNA, U104 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-08 2006-05-08 2015-01-29 26769 uc057iar.1 "AJ224028|AF141346" NR_003938 "15556860|9819378" SR0000026 +HGNC:10240 SNORD82 small nucleolar RNA, C/D box 82 non-coding RNA RNA, small nucleolar Approved 2q37.1 02q37.1 "Z25|U82" RNU82 RNA, U82 small nuclear Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-08 2006-05-08 2013-09-05 25826 ENSG00000202400 uc010fxw.2 AJ010666 NR_004398 "2394707|10684968" MGI:1931502 611133 SR0000282 +HGNC:17131 SNORD83A small nucleolar RNA, C/D box 83A non-coding RNA RNA, small nucleolar Approved 22q13.1 22q13.1 U83A RNU83A RNA, U83A small nucleolar Small nucleolar RNAs, C/D box 845 2001-11-07 2006-05-11 2006-05-11 2013-09-05 116937 ENSG00000209482 uc062ekn.1 AJ238852 NR_000027 10684968 611070 SR0000301 +HGNC:17132 SNORD83B small nucleolar RNA, C/D box 83B non-coding RNA RNA, small nucleolar Approved 22q13.1 22q13.1 U83B RNU83B RNA, U83B small nucleolar Small nucleolar RNAs, C/D box 845 2001-11-07 2006-05-11 2006-05-11 2013-09-05 116938 ENSG00000209480 uc062ekj.1 AJ238852 NR_000028 10684968 611071 SR0000300 +HGNC:32743 SNORD84 small nucleolar RNA, C/D box 84 non-coding RNA RNA, small nucleolar Approved 6p21.33 06p21.33 U84 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692199 ENSG00000265236 uc011jjj.1 AJ243199 NR_003065 10684929 SR0000333 +HGNC:32745 SNORD86 small nucleolar RNA, C/D box 86 non-coding RNA RNA, small nucleolar Approved 20p13 20p13 U86 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692201 ENSG00000212498 uc061vbc.1 AJ311853 NR_004399 11594746 SR0000287 +HGNC:32746 SNORD87 small nucleolar RNA, C/D box 87 non-coding RNA RNA, small nucleolar Approved 8q13.1 08q13.1 "HBII-276|U87" Small nucleolar RNAs, C/D box 845 2006-05-08 2015-02-06 641648 ENSG00000254341 uc064nkw.1 NR_002598 "12119114|11387227" 612216 SR0000354 +HGNC:32747 SNORD88A small nucleolar RNA, C/D box 88A non-coding RNA RNA, small nucleolar Approved 19q13.33 19q13.33 HBII-180A Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692202 ENSG00000221241 uc002pth.2 NR_003067 11387227 SR0000270 +HGNC:32748 SNORD88B small nucleolar RNA, C/D box 88B non-coding RNA RNA, small nucleolar Approved 19q13.33 19q13.33 HBII-180B Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692203 ENSG00000221381 uc061bss.1 NR_003068 11387227 SR0000269 +HGNC:32749 SNORD88C small nucleolar RNA, C/D box 88C non-coding RNA RNA, small nucleolar Approved 19q13.33 19q13.33 HBII-180C Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692204 ENSG00000220988 uc061bsu.1 NR_003069 11387227 SR0000271 +HGNC:32750 SNORD89 small nucleolar RNA, C/D box 89 non-coding RNA RNA, small nucleolar Approved 2q11.2 02q11.2 HBII-289 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692205 ENSG00000212283 uc002tay.1 NR_003070 11387227 SR0000275 +HGNC:32751 SNORD90 small nucleolar RNA, C/D box 90 non-coding RNA RNA, small nucleolar Approved 9q33.2 09q33.2 HBII-295 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692206 ENSG00000212447 uc004bnf.2 NR_003071 11387227 SR0000357 +HGNC:32752 SNORD91A small nucleolar RNA, C/D box 91A non-coding RNA RNA, small nucleolar Approved 17p13.3 17p13.3 HBII-296a Small nucleolar RNAs, C/D box 845 2006-05-08 2016-07-20 692207 ENSG00000212163 OTTHUMG00000185961 uc002ful.2 NR_003072 11387227 SR0000227 +HGNC:32753 SNORD91B small nucleolar RNA, C/D box 91B non-coding RNA RNA, small nucleolar Approved 17p13.3 17p13.3 HBII-296b Small nucleolar RNAs, C/D box 845 2006-05-08 2015-08-03 692208 ENSG00000275084 OTTHUMG00000185960 uc002fuk.2 NR_003073 11387227 SR0000226 +HGNC:32754 SNORD92 small nucleolar RNA, C/D box 92 non-coding RNA RNA, small nucleolar Approved 2p23.2 02p23.2 HBII-316 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692209 ENSG00000264994 uc002rmp.2 NR_003074 11387227 SR0000272 +HGNC:32755 SNORD93 small nucleolar RNA, C/D box 93 non-coding RNA RNA, small nucleolar Approved 7p15.3 07p15.3 HBII-336 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692210 ENSG00000221740 uc003svl.3 NR_003075 11387227 SR0000344 +HGNC:32756 SNORD94 small nucleolar RNA, C/D box 94 non-coding RNA RNA, small nucleolar Approved 2p11.2 02p11.2 U94 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692225 ENSG00000208772 uc010fgr.1 AY349593 NR_004378 14602913 SR0000274 +HGNC:32757 SNORD95 small nucleolar RNA, C/D box 95 non-coding RNA RNA, small nucleolar Approved 5q35.3 05q35.3 U95 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 619570 ENSG00000264549 uc064txs.1 AY349594 NR_002591 14602913 SR0000330 +HGNC:32758 SNORD96A small nucleolar RNA, C/D box 96A non-coding RNA RNA, small nucleolar Approved 5q35.3 05q35.3 U96a Small nucleolar RNAs, C/D box 845 2006-05-08 2015-02-06 619571 ENSG00000272296 uc063kya.1 AY349595 NR_002592 14602913 SR0000329 +HGNC:32759 SNORD96B small nucleolar RNA, C/D box 96B non-coding RNA RNA, small nucleolar Approved Xq23 Xq23 U96b Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692226 ENSG00000208883 uc010npr.2 AY349596 NR_004379 14602913 SR0000369 +HGNC:32760 SNORD97 small nucleolar RNA, C/D box 97 non-coding RNA RNA, small nucleolar Approved 11p15.3 11p15.3 U97 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692223 ENSG00000238622 uc009yge.3 AY349597 NR_004403 14602913 SR0000049 +HGNC:32761 SNORD98 small nucleolar RNA, C/D box 98 non-coding RNA RNA, small nucleolar Approved 10q21.3 10q21.3 HBII-419 Small nucleolar RNAs, C/D box 845 2006-05-08 2016-10-10 692211 ENSG00000283551 NR_003076 11387227 SR0000041 +HGNC:32762 SNORD99 small nucleolar RNA, C/D box 99 non-coding RNA RNA, small nucleolar Approved 1p35.3 01p35.3 HBII-420 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692212 ENSG00000221539 uc001bqq.2 NR_003077 11387227 SR0000005 +HGNC:32763 SNORD100 small nucleolar RNA, C/D box 100 non-coding RNA RNA, small nucleolar Approved 6q23.2 06q23.2 HBII-429 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 594838 ENSG00000221500 uc063rmc.1 NR_002435 11387227 SR0000340 +HGNC:32764 SNORD101 small nucleolar RNA, C/D box 101 non-coding RNA RNA, small nucleolar Approved 6q23.2 06q23.2 U101 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 594837 ENSG00000206754 uc063rmb.1 AY349602 NR_002434 14602913 SR0000339 +HGNC:10099 SNORD102 small nucleolar RNA, C/D box 102 non-coding RNA RNA, small nucleolar Approved 13q12.2 13q12.2 U102 RNU102 RNA, U102 small nucleolar Small nucleolar RNAs, C/D box 845 1999-12-14 2006-05-08 2006-05-08 2013-09-05 26771 ENSG00000207500 uc001urb.2 AY349603 NR_002574 14602913 SR0000083 +HGNC:32766 SNORD103A small nucleolar RNA, C/D box 103A non-coding RNA RNA, small nucleolar Approved 1p35.2 01p35.2 U103 Small nucleolar RNAs, C/D box 845 2006-05-11 2015-01-29 692234 AY349604 NR_004054 14602913 SR0000009 +HGNC:32767 SNORD103B small nucleolar RNA, C/D box 103B non-coding RNA RNA, small nucleolar Approved 1p35.2 01p35.2 U103B Small nucleolar RNAs, C/D box 845 2006-05-11 2015-01-29 692235 NR_033295 14602913 SR0000010 +HGNC:32744 SNORD103C small nucleolar RNA, C/D box 103C non-coding RNA RNA, small nucleolar Approved 1p35.2 01p35.2 HBII-251 SNORD85 small nucleolar RNA, C/D box 85 Small nucleolar RNAs, C/D box 845 2006-05-08 2015-11-11 2015-11-11 2015-11-11 692200 NR_003066 11387227 SR0000011 +HGNC:32768 SNORD104 small nucleolar RNA, C/D box 104 non-coding RNA RNA, small nucleolar Approved 17q23.3 17q23.3 U104 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692227 ENSG00000199753 uc010dee.2 AY349605 NR_004380 14602913 SR0000248 +HGNC:32769 SNORD105 small nucleolar RNA, C/D box 105 non-coding RNA RNA, small nucleolar Approved 19p13.2 19p13.2 U105 Small nucleolar RNAs, C/D box 845 2006-05-08 2007-08-01 2007-08-01 2013-09-05 692229 ENSG00000209645 uc010dwy.1 AY349606 NR_004381 14602913 SR0000260 +HGNC:33572 SNORD105B small nucleolar RNA, C/D box 105B non-coding RNA RNA, small nucleolar Approved 2q33.1 02q33.1 Small nucleolar RNAs, C/D box 845 2007-07-31 2008-07-02 100113382 ENSG00000238531 uc010dwz.2 AM413024 NR_003688 SR0000477 +HGNC:32771 SNORD107 small nucleolar RNA, C/D box 107 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-436 Small nucleolar RNAs, C/D box 845 2006-05-08 2015-02-03 91380 ENSG00000276314 uc001yxb.5 AY055806 NR_001293 11726556 SR0000132 +HGNC:32772 SNORD108 small nucleolar RNA, C/D box 108 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-437 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 338427 ENSG00000239014 uc059guj.1 AY055807 NR_001292 11726556 SR0000134 +HGNC:32773 SNORD109A small nucleolar RNA, C/D box 109A non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-438a Small nucleolar RNAs, C/D box 845 2006-05-08 2015-02-03 338428 ENSG00000274640 uc001yxf.1 AY055808 NR_001295 11726556 SR0000135 +HGNC:32774 SNORD109B small nucleolar RNA, C/D box 109B non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-438b Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 338429 ENSG00000239169 uc001zap.1 AC100774 NR_001289 11726556 SR0000209 +HGNC:32775 SNORD110 small nucleolar RNA, C/D box 110 non-coding RNA RNA, small nucleolar Approved 20p13 20p13 HBII-55 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692213 ENSG00000221116 uc002wgj.3 NR_003078 11387227 SR0000285 +HGNC:32776 SNORD111 small nucleolar RNA, C/D box 111 non-coding RNA RNA, small nucleolar Approved 16q22.1 16q22.1 HBII-82 Small nucleolar RNAs, C/D box 845 2006-05-08 2013-09-05 692214 ENSG00000221066 uc002ezg.1 NR_003079 11387227 SR0000223 +HGNC:33579 SNORD111B small nucleolar RNA, C/D box 111B non-coding RNA RNA, small nucleolar Approved 16q22.1 16q22.1 hsa-mir-3647 MIR3647 microRNA 3647 Small nucleolar RNAs, C/D box 845 2007-08-01 2014-11-18 100113402 ENSG00000221514 uc010cfv.3 AM413027 NR_003696 SR0000479 +HGNC:32777 SNORD112 small nucleolar RNA, C/D box 112 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(0) Small nucleolar RNAs, C/D box 845 2006-05-08 2015-02-03 692215 ENSG00000275662 uc064mix.1 NR_003080 12045206 613649 SR0000090 +HGNC:32980 SNORD113-1 small nucleolar RNA, C/D box 113-1 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-1) Small nucleolar RNAs, C/D box 845 2006-09-20 2013-09-05 767561 ENSG00000202191 uc001yii.2 NR_003229.1 12045206 613650 SR0000091 +HGNC:32981 SNORD113-2 small nucleolar RNA, C/D box 113-2 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-2) Small nucleolar RNAs, C/D box 845 2006-09-20 2013-09-05 767562 ENSG00000212384 uc001yij.4 NR_003230.1 12045206 SR0000092 +HGNC:32982 SNORD113-3 small nucleolar RNA, C/D box 113-3 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-3) Small nucleolar RNAs, C/D box 845 2006-09-20 2013-09-05 767563 ENSG00000201700 uc021sci.3 NR_003231.1 12045206 SR0000093 +HGNC:32983 SNORD113-4 small nucleolar RNA, C/D box 113-4 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-4) Small nucleolar RNAs, C/D box 845 2006-09-20 2013-09-05 767564 ENSG00000201672 uc001yil.4 NR_003232.1 12045206 SR0000094 +HGNC:32984 SNORD113-5 small nucleolar RNA, C/D box 113-5 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-5) Small nucleolar RNAs, C/D box 845 2006-09-20 2015-02-03 767565 ENSG00000272474 uc001yim.2 NR_003233.1 12045206 SR0000095 +HGNC:32985 SNORD113-6 small nucleolar RNA, C/D box 113-6 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-6) Small nucleolar RNAs, C/D box 845 2006-09-20 2013-09-05 767566 ENSG00000200215 uc001yin.4 NR_003234.1 12045206 SR0000096 +HGNC:32986 SNORD113-7 small nucleolar RNA, C/D box 113-7 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-7) Small nucleolar RNAs, C/D box 845 2006-09-20 2013-09-05 767567 ENSG00000200632 uc001yio.4 NR_003235.1 12045206 SR0000097 +HGNC:32987 SNORD113-8 small nucleolar RNA, C/D box 113-8 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-8) Small nucleolar RNAs, C/D box 845 2006-09-20 2013-09-05 767568 ENSG00000200367 uc032blu.2 NR_003236.1 12045206 SR0000098 +HGNC:32988 SNORD113-9 small nucleolar RNA, C/D box 113-9 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(I-9) Small nucleolar RNAs, C/D box 845 2006-09-20 2013-09-05 767569 ENSG00000201950 uc001yiq.4 NR_003237.1 12045206 SR0000099 +HGNC:32778 SNORD113@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-02-06 +HGNC:32989 SNORD114-1 small nucleolar RNA, C/D box 114-1 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-1) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767577 ENSG00000199575 uc001yir.4 NR_003193.1 12045206 613651 SR0000100 +HGNC:32990 SNORD114-2 small nucleolar RNA, C/D box 114-2 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-2) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767578 ENSG00000200823 uc001yis.4 NR_003194.1 12045206 SR0000101 +HGNC:32991 SNORD114-3 small nucleolar RNA, C/D box 114-3 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-3) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767579 ENSG00000201839 uc001yit.4 NR_003195.1 12045206 SR0000102 +HGNC:32992 SNORD114-4 small nucleolar RNA, C/D box 114-4 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-4) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767580 ENSG00000200832 uc001yiu.4 NR_003196.1 12045206 SR0000103 +HGNC:32993 SNORD114-5 small nucleolar RNA, C/D box 114-5 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-5) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767581 ENSG00000199798 uc001yiv.4 NR_003197.1 12045206 SR0000104 +HGNC:32994 SNORD114-6 small nucleolar RNA, C/D box 114-6 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-6) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767582 ENSG00000201263 uc001yiw.4 NR_003198.1 12045206 SR0000105 +HGNC:32995 SNORD114-7 small nucleolar RNA, C/D box 114-7 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-7) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767583 ENSG00000199390 uc001yix.2 NR_003199.1 12045206 SR0000106 +HGNC:32996 SNORD114-8 small nucleolar RNA, C/D box 114-8 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-8) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767584 NR_003200.1 12045206 SR0000107 +HGNC:32997 SNORD114-9 small nucleolar RNA, C/D box 114-9 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-9) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767585 ENSG00000201240 uc001yiz.4 NR_003201.1 12045206 SR0000108 +HGNC:32998 SNORD114-10 small nucleolar RNA, C/D box 114-10 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-10) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767588 ENSG00000200279 uc001yja.4 NR_003203.1 12045206 SR0000109 +HGNC:32999 SNORD114-11 small nucleolar RNA, C/D box 114-11 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-11) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767589 ENSG00000200608 uc001yjb.4 NR_003204.1 12045206 SR0000110 +HGNC:33000 SNORD114-12 small nucleolar RNA, C/D box 114-12 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-12) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767590 ENSG00000202270 uc001yjc.4 NR_003205.1 12045206 SR0000111 +HGNC:33001 SNORD114-13 small nucleolar RNA, C/D box 114-13 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-13) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767591 ENSG00000201247 uc001yjd.4 NR_003206.1 12045206 SR0000112 +HGNC:33002 SNORD114-14 small nucleolar RNA, C/D box 114-14 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-14) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767592 ENSG00000199593 uc001yje.4 NR_003207.1 12045206 SR0000113 +HGNC:33003 SNORD114-15 small nucleolar RNA, C/D box 114-15 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-15) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767593 ENSG00000201557 uc001yjf.2 NR_003208.1 12045206 SR0000114 +HGNC:33004 SNORD114-16 small nucleolar RNA, C/D box 114-16 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-16) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767594 ENSG00000199914 uc001yjg.4 NR_003209.1 12045206 SR0000115 +HGNC:33005 SNORD114-17 small nucleolar RNA, C/D box 114-17 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-17) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767595 ENSG00000201569 uc001yjh.4 NR_003210.1 12045206 SR0000116 +HGNC:33006 SNORD114-18 small nucleolar RNA, C/D box 114-18 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-18) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767596 ENSG00000202142 uc001yji.4 NR_003211.1 12045206 SR0000117 +HGNC:33007 SNORD114-19 small nucleolar RNA, C/D box 114-19 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-19) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767597 ENSG00000199942 uc001yjj.4 NR_003212.1 12045206 SR0000118 +HGNC:33008 SNORD114-20 small nucleolar RNA, C/D box 114-20 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-20) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767598 ENSG00000202048 uc001yjk.2 NR_003213.1 12045206 SR0000119 +HGNC:33009 SNORD114-21 small nucleolar RNA, C/D box 114-21 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-21) Small nucleolar RNAs, C/D box 845 2006-09-26 2015-02-03 767599 ENSG00000272344 uc001yjl.4 NR_003214.1 12045206 SR0000120 +HGNC:33010 SNORD114-22 small nucleolar RNA, C/D box 114-22 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-22) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767600 ENSG00000202293 uc001yjm.4 NR_003215.1 12045206 SR0000121 +HGNC:33011 SNORD114-23 small nucleolar RNA, C/D box 114-23 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-23) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767603 ENSG00000200406 uc001yjn.4 NR_003216.1 12045206 SR0000122 +HGNC:33012 SNORD114-24 small nucleolar RNA, C/D box 114-24 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-24) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767604 ENSG00000201899 uc001yjo.2 NR_003217.1 12045206 SR0000123 +HGNC:33013 SNORD114-25 small nucleolar RNA, C/D box 114-25 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-25) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767605 ENSG00000200612 uc001yjp.2 NR_003218.1 12045206 SR0000124 +HGNC:33014 SNORD114-26 small nucleolar RNA, C/D box 114-26 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-26) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767606 ENSG00000200413 uc001yjq.4 NR_003219.1 12045206 SR0000125 +HGNC:33015 SNORD114-27 small nucleolar RNA, C/D box 114-27 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-27) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767608 ENSG00000200636 uc001yjr.4 NR_003220.1 12045206 SR0000126 +HGNC:33016 SNORD114-28 small nucleolar RNA, C/D box 114-28 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-28) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767609 ENSG00000200480 uc001yjs.4 NR_003221.1 12045206 SR0000127 +HGNC:33017 SNORD114-29 small nucleolar RNA, C/D box 114-29 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-29) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767610 ENSG00000201689 uc001yjt.2 NR_003222.1 12045206 SR0000128 +HGNC:33018 SNORD114-30 small nucleolar RNA, C/D box 114-30 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-30) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767611 ENSG00000201318 uc001yju.4 NR_003223.1 12045206 SR0000129 +HGNC:33019 SNORD114-31 small nucleolar RNA, C/D box 114-31 non-coding RNA RNA, small nucleolar Approved 14q32.31 14q32.31 14q(II-31) Small nucleolar RNAs, C/D box 845 2006-09-26 2013-09-05 767612 ENSG00000200089 uc001yjv.4 NR_003224.1 12045206 SR0000130 +HGNC:32779 SNORD114@ small nucleolar RNA, C/D box 114 cluster non-coding RNA RNA, cluster Approved 14q32.31 14q32.31 14q(II) 2006-05-09 2013-05-02 692217 12045206 +HGNC:33020 SNORD115-1 small nucleolar RNA, C/D box 115-1 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-1 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 338433 ENSG00000201831 uc001yyq.1 AF250841 NR_001291 "11106375|11726556" 609837 SR0000165 +HGNC:33021 SNORD115-2 small nucleolar RNA, C/D box 115-2 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-2 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033437 ENSG00000199712 uc001yyr.1 AF250841 NR_003294.1 "11106375|11726556" SR0000166 +HGNC:33022 SNORD115-3 small nucleolar RNA, C/D box 115-3 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-3 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033440 ENSG00000199970 uc001yyt.1 AF250841 NR_003295.1 "11106375|11726556" SR0000167 +HGNC:33023 SNORD115-4 small nucleolar RNA, C/D box 115-4 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-4 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033441 ENSG00000200680 uc001yyu.1 AF250841 NR_003296.1 "11106375|11726556" SR0000168 +HGNC:33024 SNORD115-5 small nucleolar RNA, C/D box 115-5 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-5 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033442 ENSG00000200503 uc001yyv.1 AF250841 NR_003297.1 "11106375|11726556" SR0000169 +HGNC:33025 SNORD115-6 small nucleolar RNA, C/D box 115-6 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-6 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033443 ENSG00000200812 uc001yyx.1 AF250841 NR_003298.1 "11106375|11726556" SR0000170 +HGNC:33026 SNORD115-7 small nucleolar RNA, C/D box 115-7 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-7 Small nucleolar RNAs, C/D box 845 2007-02-15 2015-02-03 100033444 ENSG00000278089 uc001yyz.2 AF250841 NR_003299.1 "11106375|11726556" SR0000171 +HGNC:33027 SNORD115-8 small nucleolar RNA, C/D box 115-8 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-8 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033445 ENSG00000200726 uc001yzb.1 AF250841 NR_003300.1 "11106375|11726556" SR0000172 +HGNC:33028 SNORD115-9 small nucleolar RNA, C/D box 115-9 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-9 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033446 ENSG00000199782 uc001yzc.1 AF250841 NR_003301.1 "11106375|11726556" SR0000173 +HGNC:33029 SNORD115-10 small nucleolar RNA, C/D box 115-10 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-10 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033447 ENSG00000201943 uc001yzd.1 AF250841 NR_003302.1 "11106375|11726556" SR0000174 +HGNC:33030 SNORD115-11 small nucleolar RNA, C/D box 115-11 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-11 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033448 ENSG00000200486 uc001yze.1 AF250841 NR_003303.1 "11106375|11726556" SR0000175 +HGNC:33031 SNORD115-12 small nucleolar RNA, C/D box 115-12 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-12 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033449 ENSG00000199453 uc001yzg.1 AF250841 NR_003304.1 "11106375|11726556" SR0000176 +HGNC:33032 SNORD115-13 small nucleolar RNA, C/D box 115-13 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-13 Small nucleolar RNAs, C/D box 845 2007-02-15 2015-02-03 100033450 ENSG00000273835 uc001yzh.2 AF250841 NR_003305.1 "11106375|11726556" SR0000177 +HGNC:33033 SNORD115-14 small nucleolar RNA, C/D box 115-14 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-14 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033451 ENSG00000199960 uc001yzj.1 AF250841 NR_003306.1 "11106375|11726556" SR0000178 +HGNC:33034 SNORD115-15 small nucleolar RNA, C/D box 115-15 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-15 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033453 ENSG00000201679 uc032bwd.1 AF250841 NR_003307.1 "11106375|11726556" SR0000179 +HGNC:33035 SNORD115-16 small nucleolar RNA, C/D box 115-16 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-16 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033454 ENSG00000200757 uc001yzm.1 AF250841 NR_003308.1 "11106375|11726556" SR0000180 +HGNC:33036 SNORD115-17 small nucleolar RNA, C/D box 115-17 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-17 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033455 ENSG00000201482 uc001yzn.1 AF250841 NR_003309.1 "11106375|11726556" SR0000181 +HGNC:33037 SNORD115-18 small nucleolar RNA, C/D box 115-18 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-18 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033456 ENSG00000200163 uc001yzo.1 AF250841 NR_003310.1 "11106375|11726556" SR0000182 +HGNC:33038 SNORD115-19 small nucleolar RNA, C/D box 115-19 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-19 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033458 ENSG00000199968 uc001yzp.1 AF250841 NR_003311.1 "11106375|11726556" SR0000183 +HGNC:33039 SNORD115-20 small nucleolar RNA, C/D box 115-20 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-20 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033460 ENSG00000201969 uc059gvg.1 AF250841 NR_003312.1 "11106375|11726556" SR0000184 +HGNC:33040 SNORD115-21 small nucleolar RNA, C/D box 115-21 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-21 Small nucleolar RNAs, C/D box 845 2007-02-15 2014-11-19 100033603 ENSG00000199833 uc059gvh.1 AF250841 NR_003313.1 "11106375|11726556" SR0000185 +HGNC:33041 SNORD115-22 small nucleolar RNA, C/D box 115-22 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-22 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033799 ENSG00000201326 uc001yzr.1 AF250841 NR_003314.1 "11106375|11726556" SR0000186 +HGNC:33042 SNORD115-23 small nucleolar RNA, C/D box 115-23 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-23 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033800 ENSG00000201331 uc001yzs.3 AF250841 NR_003315.1 "11106375|11726556" SR0000187 +HGNC:33043 SNORD115-24 small nucleolar RNA, C/D box 115-24 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-24 Small nucleolar RNAs, C/D box 845 2010-10-05 2013-09-05 100036563 ENSG00000200398 uc010ayp.2 NR_003495 "11106375|11726556" +HGNC:33044 SNORD115-25 small nucleolar RNA, C/D box 115-25 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-25 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033801 ENSG00000199489 uc001yzu.1 AF250841 NR_003342.1 "11106375|11726556" SR0000188 +HGNC:33045 SNORD115-26 small nucleolar RNA, C/D box 115-26 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-26 Small nucleolar RNAs, C/D box 845 2007-02-15 2015-02-03 100033802 ENSG00000275524 uc001yzv.2 AF250841 NR_003343.1 "11106375|11726556" SR0000189 +HGNC:33046 SNORD115-27 small nucleolar RNA, C/D box 115-27 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-27 Small nucleolar RNAs, C/D box 845 2011-08-22 2013-09-05 100036564 ENSG00000201300 uc010ayq.2 NR_003496 "11106375|11726556" +HGNC:33047 SNORD115-28 small nucleolar RNA, C/D box 115-28 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-28 Small nucleolar RNAs, C/D box 845 2011-08-22 2013-09-05 100036565 ENSG00000200801 uc010ayr.2 NR_003497 "11106375|11726556" +HGNC:33048 SNORD115-29 small nucleolar RNA, C/D box 115-29 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-29 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033803 ENSG00000199704 uc001yzx.1 AF250841 NR_003344.1 "11106375|11726556" SR0000190 +HGNC:33049 SNORD115-30 small nucleolar RNA, C/D box 115-30 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-30 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033804 ENSG00000200987 uc001yzy.1 AF250841 NR_003345.1 "11106375|11726556" SR0000191 +HGNC:33050 SNORD115-31 small nucleolar RNA, C/D box 115-31 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-31 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033805 ENSG00000202188 uc001yzz.1 AF250841 NR_003346.1 "11106375|11726556" SR0000192 +HGNC:33051 SNORD115-32 small nucleolar RNA, C/D box 115-32 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-32 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033806 ENSG00000200949 uc001zaa.1 AF250841 NR_003347.1 "11106375|11726556" SR0000193 +HGNC:33052 SNORD115-33 small nucleolar RNA, C/D box 115-33 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-33 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033807 ENSG00000200593 uc001zab.1 AF250841 NR_003348.1 "11106375|11726556" SR0000194 +HGNC:33053 SNORD115-34 small nucleolar RNA, C/D box 115-34 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-34 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033808 ENSG00000199311 uc059gvi.1 AF250841 NR_003349.1 "11106375|11726556" SR0000195 +HGNC:33054 SNORD115-35 small nucleolar RNA, C/D box 115-35 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-35 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033809 ENSG00000201992 uc001zac.1 AF250841 NR_003350.1 "11106375|11726556" SR0000196 +HGNC:33055 SNORD115-36 small nucleolar RNA, C/D box 115-36 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-36 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033810 ENSG00000202499 uc001zad.1 AF250841 NR_003351.1 "11106375|11726556" SR0000197 +HGNC:33056 SNORD115-37 small nucleolar RNA, C/D box 115-37 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-37 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033811 ENSG00000200638 uc001zaf.1 AF250841 NR_003352.1 "11106375|11726556" SR0000198 +HGNC:33057 SNORD115-38 small nucleolar RNA, C/D box 115-38 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-38 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033812 ENSG00000201907 uc001zag.1 AF250841 NR_003353.1 "11106375|11726556" SR0000199 +HGNC:33058 SNORD115-39 small nucleolar RNA, C/D box 115-39 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-39 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033813 ENSG00000200564 uc001zah.1 AF250841 NR_003354.1 "11106375|11726556" SR0000200 +HGNC:33059 SNORD115-40 small nucleolar RNA, C/D box 115-40 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-40 Small nucleolar RNAs, C/D box 845 2007-02-15 2015-02-03 100033814 ENSG00000272460 uc001zai.1 AF250841 NR_003355.1 "11106375|11726556" SR0000201 +HGNC:33060 SNORD115-41 small nucleolar RNA, C/D box 115-41 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-41 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033815 ENSG00000200478 uc001zaj.1 AF250841 NR_003356.1 "11106375|11726556" SR0000202 +HGNC:33061 SNORD115-42 small nucleolar RNA, C/D box 115-42 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-42 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033816 ENSG00000201143 uc001zak.1 AF250841 NR_003357.1 "11106375|11726556" SR0000203 +HGNC:33062 SNORD115-43 small nucleolar RNA, C/D box 115-43 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-43 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033817 ENSG00000202373 uc001zal.1 AF250841 NR_003358.1 "11106375|11726556" SR0000204 +HGNC:33063 SNORD115-44 small nucleolar RNA, C/D box 115-44 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-44 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033818 ENSG00000202261 uc001zam.1 AF250841 NR_003359.1 "11106375|11726556" SR0000205 +HGNC:33064 SNORD115-45 small nucleolar RNA, C/D box 115-45 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 "HBII-52-45|SNORD115-48" Small nucleolar RNAs, C/D box 845 2011-08-22 2013-09-05 100036566 ENSG00000212380 uc010ays.4 NR_003498 "11106375|11726556" +HGNC:42798 SNORD115-46 small nucleolar RNA, C/D box 115-46 non-coding RNA RNA, small nucleolar Approved 15q11.2 not on reference assembly 15q11.2 not on reference assembly HBII-52-46 Small nucleolar RNAs, C/D box 845 2011-08-22 2015-02-04 100873857 ENSG00000276844 uc059gvk.1 NR_047033 +HGNC:33065 SNORD115-47 small nucleolar RNA, C/D box 115-47 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-47 Small nucleolar RNAs, C/D box 845 2011-08-22 2011-08-22 2014-02-12 100036567 ENSG00000212528 uc010ayt.2 NR_003499 "11106375|11726556" +HGNC:33343 SNORD115-48 small nucleolar RNA, C/D box 115-48 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-52-48 Small nucleolar RNAs, C/D box 845 2007-02-16 2013-09-05 100033822 ENSG00000201634 uc001zao.1 AF250841 NR_003362.1 "11106375|11726556" SR0000206 +HGNC:32780 SNORD115@ small nucleolar RNA, C/D box 115 cluster non-coding RNA RNA, cluster Approved 15q11.2 15q11.2 HBII-52 2006-05-09 2013-05-02 692218 AF250841 NG_002690 "11106375|11726556" 159915 +HGNC:33067 SNORD116-1 small nucleolar RNA, C/D box 116-1 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-1 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033413 ENSG00000207063 uc001yxg.4 AF250841 NR_003316 "11106375|11726556" 605436 SR0000136 +HGNC:33068 SNORD116-2 small nucleolar RNA, C/D box 116-2 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-2 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033414 ENSG00000207001 uc001yxi.4 AF250841 NR_003317 "11106375|11726556" SR0000137 +HGNC:33069 SNORD116-3 small nucleolar RNA, C/D box 116-3 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-3 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033415 ENSG00000207014 uc001yxk.4 AF250841 NR_003318 "11106375|11726556" SR0000138 +HGNC:33070 SNORD116-4 small nucleolar RNA, C/D box 116-4 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-4 Small nucleolar RNAs, C/D box 845 2007-02-15 2015-02-03 100033416 ENSG00000275529 uc001yxl.5 AF250841 NR_003319 "11106375|11726556" SR0000139 +HGNC:33071 SNORD116-5 small nucleolar RNA, C/D box 116-5 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-5 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033417 ENSG00000207191 uc001yxo.4 AF250841 NR_003320 "11106375|11726556" SR0000140 +HGNC:33072 SNORD116-6 small nucleolar RNA, C/D box 116-6 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-6 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033418 ENSG00000207442 uc001yxp.5 AF250841 NR_003321 "11106375|11726556" SR0000141 +HGNC:33073 SNORD116-7 small nucleolar RNA, C/D box 116-7 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-7 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033419 ENSG00000207133 uc059gus.1 AF250841 NR_003322 "11106375|11726556" SR0000142 +HGNC:33074 SNORD116-8 small nucleolar RNA, C/D box 116-8 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-8 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033420 ENSG00000207093 uc001yxr.4 AF250841 NR_003323 "11106375|11726556" SR0000143 +HGNC:33075 SNORD116-9 small nucleolar RNA, C/D box 116-9 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-9 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033421 ENSG00000206727 uc001yxs.4 AF250841 NR_003324 "11106375|11726556" SR0000144 +HGNC:33076 SNORD116-10 small nucleolar RNA, C/D box 116-10 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-10 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033422 ENSG00000200661 uc001yxt.4 AF250841 NR_003325 "11106375|11726556" SR0000145 +HGNC:33077 SNORD116-11 small nucleolar RNA, C/D box 116-11 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-11 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033423 ENSG00000206609 uc001yxu.4 AF250841 NR_003326 "11106375|11726556" SR0000146 +HGNC:33078 SNORD116-12 small nucleolar RNA, C/D box 116-12 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-12 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033424 ENSG00000207197 uc001yxv.2 AF250841 NR_003327 "11106375|11726556" SR0000147 +HGNC:33079 SNORD116-13 small nucleolar RNA, C/D box 116-13 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-13 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033425 ENSG00000207137 uc001yxw.5 AF250841 NR_003328 "11106375|11726556" SR0000148 +HGNC:33080 SNORD116-14 small nucleolar RNA, C/D box 116-14 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-14 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033426 ENSG00000206621 uc059gut.1 AF250841 NR_003329 "11106375|11726556" SR0000149 +HGNC:33081 SNORD116-15 small nucleolar RNA, C/D box 116-15 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-15 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033427 ENSG00000207174 uc001yxz.4 AF250841 NR_003330 "11106375|11726556" SR0000150 +HGNC:33082 SNORD116-16 small nucleolar RNA, C/D box 116-16 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-16 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033428 ENSG00000207263 uc001yya.4 AF250841 NR_003331 "11106375|11726556" SR0000151 +HGNC:33083 SNORD116-17 small nucleolar RNA, C/D box 116-17 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-17 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033429 ENSG00000206656 uc001yyc.4 AF250841 NR_003332 "11106375|11726556" SR0000152 +HGNC:33084 SNORD116-18 small nucleolar RNA, C/D box 116-18 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-18 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033430 ENSG00000206688 uc010ayk.4 AF250841 NR_003333 "11106375|11726556" SR0000153 +HGNC:33085 SNORD116-19 small nucleolar RNA, C/D box 116-19 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-19 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 727708 ENSG00000207460 uc001yye.2 AF250841 NR_001290 "11106375|11726556" SR0000154 +HGNC:33086 SNORD116-20 small nucleolar RNA, C/D box 116-20 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-20 Small nucleolar RNAs, C/D box 845 2007-02-15 2015-02-03 100033431 ENSG00000278715 uc059guu.1 AF250841 NR_003334 "11106375|11726556" SR0000155 +HGNC:33087 SNORD116-21 small nucleolar RNA, C/D box 116-21 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-21 Small nucleolar RNAs, C/D box 845 2007-02-15 2015-02-03 100033432 ENSG00000277785 uc059guv.1 AF250841 NR_003335 "11106375|11726556" SR0000156 +HGNC:33088 SNORD116-22 small nucleolar RNA, C/D box 116-22 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-22 Small nucleolar RNAs, C/D box 845 2007-02-15 2015-02-03 100033433 ENSG00000275127 uc059guw.1 AF250841 NR_003336 "11106375|11726556" SR0000157 +HGNC:33089 SNORD116-23 small nucleolar RNA, C/D box 116-23 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-23 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033434 ENSG00000207375 uc001yyh.4 AF250841 NR_003337 "11106375|11726556" SR0000158 +HGNC:33090 SNORD116-24 small nucleolar RNA, C/D box 116-24 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-24 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033435 ENSG00000207279 uc001yyj.4 AF250841 NR_003338 "11106375|11726556" SR0000159 +HGNC:33091 SNORD116-25 small nucleolar RNA, C/D box 116-25 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-25 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033436 ENSG00000252326 uc001yyk.4 AF250841 NR_003339 "11106375|11726556" SR0000160 +HGNC:33092 SNORD116-26 small nucleolar RNA, C/D box 116-26 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-26 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033438 ENSG00000251815 uc001yyl.5 AF250841 NR_003340 "11106375|11726556" SR0000161 +HGNC:33093 SNORD116-27 small nucleolar RNA, C/D box 116-27 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-27 Small nucleolar RNAs, C/D box 845 2007-02-15 2013-09-05 100033439 ENSG00000251896 uc059gux.1 AF250841 NR_003341 "11106375|11726556" SR0000162 +HGNC:33347 SNORD116-28 small nucleolar RNA, C/D box 116-28 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-28 Small nucleolar RNAs, C/D box 845 2007-02-16 2015-02-03 100033820 ENSG00000278123 uc059guy.1 AF250841 NR_003361 "11106375|11726556" SR0000377 +HGNC:33348 SNORD116-29 small nucleolar RNA, C/D box 116-29 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-29 Small nucleolar RNAs, C/D box 845 2007-02-16 2013-09-05 100033821 ENSG00000207245 uc001yyo.4 AF250841 NR_003360 "11106375|11726556" SR0000378 +HGNC:42797 SNORD116-30 small nucleolar RNA, C/D box 116-30 non-coding RNA RNA, small nucleolar Approved 15q11.2 15q11.2 HBII-85-30 Small nucleolar RNAs, C/D box 845 2011-08-22 2014-11-19 100873856 ENSG00000252277 uc059guz.1 NR_047032 +HGNC:32781 SNORD116@ small nucleolar RNA, C/D box 116 cluster non-coding RNA RNA, cluster Approved 15q11.2 15q11.2 "HBII-85|PET1" PWCR1 Prader-Willi syndrome chromosome region 1 2006-05-11 2014-11-19 692236 AF250841 NR_003106 "11007541|11106375|11726556" 159122 +HGNC:32742 SNORD117 small nucleolar RNA, C/D box 117 non-coding RNA RNA, small nucleolar Approved 6p21.33 06p21.33 U83 Small nucleolar RNAs, C/D box 845 2006-05-11 2013-09-05 692233 ENSG00000201785 uc003nty.1 AJ243200 NR_003140 10684929 SR0000332 +HGNC:32952 SNORD118 small nucleolar RNA, C/D box 118 non-coding RNA RNA, small nucleolar Approved 17p13.1 17p13.1 U8 Small nucleolar RNAs, C/D box 845 2006-07-07 2013-09-05 727676 ENSG00000200463 uc060ayv.1 NR_033294 "2411727|2531075" 616663 SR0000232 +HGNC:33558 SNORD119 small nucleolar RNA, C/D box 119 non-coding RNA RNA, small nucleolar Approved 20p13 20p13 Small nucleolar RNAs, C/D box 845 2007-07-31 2015-01-29 100113378 AM413030 NR_003684 SR0000476 +HGNC:33560 SNORD121A small nucleolar RNA, C/D box 121A non-coding RNA RNA, small nucleolar Approved 9p13.3 09p13.3 Small nucleolar RNAs, C/D box 845 2007-07-31 2008-07-02 100113379 ENSG00000238886 uc010mjz.4 AM413031 NR_003685 SR0000489 +HGNC:33569 SNORD121B small nucleolar RNA, C/D box 121B non-coding RNA RNA, small nucleolar Approved 9p13.3 09p13.3 Small nucleolar RNAs, C/D box 845 2007-07-31 2014-01-30 101340252 ENSG00000238300 uc031tdn.2 AM413032 NR_102370 SR0000490 +HGNC:33562 SNORD123 small nucleolar RNA, C/D box 123 non-coding RNA RNA, small nucleolar Approved 5p15.2 05p15.2 Small nucleolar RNAs, C/D box 845 2007-07-31 2012-07-19 100113384 ENSG00000239112 uc010itp.2 AM413035 NR_003689 MGI:5297223 SR0000488 +HGNC:33563 SNORD124 small nucleolar RNA, C/D box 124 non-coding RNA RNA, small nucleolar Approved 17q21.1 17q21.1 Small nucleolar RNAs, C/D box 845 2007-07-31 2014-01-30 101340251 ENSG00000238793 uc031rac.2 AM413036 NR_102369 SR0000487 +HGNC:33564 SNORD125 small nucleolar RNA, C/D box 125 non-coding RNA RNA, small nucleolar Approved 22q12.2 22q12.2 Small nucleolar RNAs, C/D box 845 2007-07-31 2008-07-02 100113380 ENSG00000239127 uc062cxv.1 AM413037 NR_003686 SR0000486 +HGNC:33565 SNORD126 small nucleolar RNA, C/D box 126 non-coding RNA RNA, small nucleolar Approved 14q11.2 14q11.2 hsa-mir-1201 "MIR1201|MIRN1201" microRNA 1201 Small nucleolar RNAs, C/D box 845 2007-07-31 2014-11-19 100113391 ENSG00000238344 uc010ahi.2 AM413038 NR_003693 SR0000485 +HGNC:33555 SNORD127 small nucleolar RNA, C/D box 127 non-coding RNA RNA, small nucleolar Approved 14q21.3 14q21.3 Small nucleolar RNAs, C/D box 845 2007-07-31 2007-07-31 2014-02-12 100113389 ENSG00000239043 uc010ane.4 AM413025 NR_003691 SR0000491 +HGNC:50409 SNORD128 small nucleolar RNA, C/D box 128 non-coding RNA RNA, small nucleolar Approved 1p36.23 01p36.23 ZL43 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106632271 NR_132752 25514182 +HGNC:50410 SNORD129 small nucleolar RNA, C/D box 129 non-coding RNA RNA, small nucleolar Approved 10p14 10p14 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106635547 NR_132972 25514182 +HGNC:50411 SNORD130 small nucleolar RNA, C/D box 130 non-coding RNA RNA, small nucleolar Approved 10p12.1 10p12.1 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106635548 NR_132973 25514182 +HGNC:50412 SNORD131 small nucleolar RNA, C/D box 131 non-coding RNA RNA, small nucleolar Approved 11p15.5 11p15.5 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106635549 NR_132974 25514182 +HGNC:50413 SNORD132 small nucleolar RNA, C/D box 132 non-coding RNA RNA, small nucleolar Approved 2q13 02q13 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106635550 NR_132975 25514182 +HGNC:50414 SNORD133 small nucleolar RNA, C/D box 133 non-coding RNA RNA, small nucleolar Approved 12q13.12 12q13.12 "ZL42|ggn68" Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106633800 NR_132753 25514182 +HGNC:50415 SNORD134 small nucleolar RNA, C/D box 134 non-coding RNA RNA, small nucleolar Approved 17q25.3 17q25.3 ZL12 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106633803 NR_132755 25514182 +HGNC:50416 SNORD135 small nucleolar RNA, C/D box 135 non-coding RNA RNA, small nucleolar Approved 19p13.2 19p13.2 ZL2 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106633804 NR_132756 25514182 +HGNC:50417 SNORD136 small nucleolar RNA, C/D box 136 non-coding RNA RNA, small nucleolar Approved 3p21.1 03p21.1 ZL26 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106633805 NR_132757 25514182 +HGNC:50419 SNORD137 small nucleolar RNA, C/D box 137 non-coding RNA RNA, small nucleolar Approved 9p23 09p23 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106635615 NR_132976 25514182 +HGNC:50420 SNORD138 small nucleolar RNA, C/D box 138 non-coding RNA RNA, small nucleolar Approved 5q14.3 05q14.3 hsa-mir-3607 MIR3607 microRNA 3607 Small nucleolar RNAs, C/D box 845 2014-11-21 2016-07-28 24174566 +HGNC:50421 SNORD139 small nucleolar RNA, C/D box 139 non-coding RNA RNA, small nucleolar Approved 22q13.1 22q13.1 Small nucleolar RNAs, C/D box 845 2014-11-20 2014-11-20 116936 NR_000026 24174566 611069 +HGNC:51405 SNORD140 small nucleolar RNA, C/D box 140 non-coding RNA RNA, small nucleolar Approved 22q13.2 22q13.2 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106635682 NR_132979 25514182 +HGNC:51406 SNORD141A small nucleolar RNA, C/D box 141A non-coding RNA RNA, small nucleolar Approved 9q34.13 09q34.13 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106635683 NR_132980 25514182 +HGNC:51407 SNORD141B small nucleolar RNA, C/D box 141B non-coding RNA RNA, small nucleolar Approved 5p15.2 05p15.2 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-30 106635684 NR_132981 25514182 +HGNC:50389 SNORD142 small nucleolar RNA, C/D box 142 non-coding RNA RNA, small nucleolar Approved 10p15.2 10p15.2 ZL68 "SNORA85|SNORD174" "small nucleolar RNA, H/ACA box 85|SNORD small nucleolar RNA, C/D box 174" Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-18 2015-09-18 2016-02-03 106633806 NR_132758 23706177 +HGNC:50400 SNORD143 small nucleolar RNA, C/D box 143 non-coding RNA RNA, small nucleolar Approved 4q21.22 04q21.22 ZL5 "SNORA96|SNORD171" "small nucleolar RNA, H/ACA box 96|small nucleolar RNA, C/D box 171" Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-18 2015-09-18 2015-09-23 106633808 NR_132759 23706177 +HGNC:50401 SNORD144 small nucleolar RNA, C/D box 144 non-coding RNA RNA, small nucleolar Approved 4q21.22 04q21.22 ZL6 SNORA97 small nucleolar RNA, H/ACA box 97 Small nucleolar RNAs, C/D box 845 2014-11-20 2015-09-18 2015-09-18 2016-02-03 106633809 NR_132760 23706177 +HGNC:51859 SNORD145 small nucleolar RNA, C/D box 145 non-coding RNA RNA, small nucleolar Approved 1p34.1 01p34.1 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51860 SNORD146 small nucleolar RNA, C/D box 146 non-coding RNA RNA, small nucleolar Approved 3p21.31 03p21.31 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51861 SNORD147 small nucleolar RNA, C/D box 147 non-coding RNA RNA, small nucleolar Approved 11p15.1 11p15.1 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51862 SNORD148 small nucleolar RNA, C/D box 148 non-coding RNA RNA, small nucleolar Approved 16q11.2 16q11.2 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51863 SNORD149 small nucleolar RNA, C/D box 149 non-coding RNA RNA, small nucleolar Approved 8q24.3 08q24.3 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51864 SNORD150 small nucleolar RNA, C/D box 150 non-coding RNA RNA, small nucleolar Approved 11q23.3 11q23.3 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51865 SNORD151 small nucleolar RNA, C/D box 151 non-coding RNA RNA, small nucleolar Approved 7p12.3 07p12.3 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51866 SNORD152 small nucleolar RNA, C/D box 152 non-coding RNA RNA, small nucleolar Approved 19q13.13 19q13.13 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51867 SNORD153 small nucleolar RNA, C/D box 153 non-coding RNA RNA, small nucleolar Approved 11q25 11q25 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51868 SNORD154 small nucleolar RNA, C/D box 154 non-coding RNA RNA, small nucleolar Approved 20q12 20q12 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51869 SNORD155 small nucleolar RNA, C/D box 155 non-coding RNA RNA, small nucleolar Approved 3q13.31 03q13.31 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51870 SNORD156 small nucleolar RNA, C/D box 156 non-coding RNA RNA, small nucleolar Approved 6q13 06q13 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51871 SNORD157 small nucleolar RNA, C/D box 157 non-coding RNA RNA, small nucleolar Approved 19q13.42 19q13.42 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51872 SNORD158 small nucleolar RNA, C/D box 158 non-coding RNA RNA, small nucleolar Approved 10q25.3 10q25.3 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51873 SNORD159 small nucleolar RNA, C/D box 159 non-coding RNA RNA, small nucleolar Approved 21q22.3 21q22.3 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51874 SNORD160 small nucleolar RNA, C/D box 160 non-coding RNA RNA, small nucleolar Approved 1p34.1 01p34.1 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51875 SNORD161 small nucleolar RNA, C/D box 161 non-coding RNA RNA, small nucleolar Approved 4q21.21 04q21.21 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51876 SNORD162 small nucleolar RNA, C/D box 162 non-coding RNA RNA, small nucleolar Approved 4p16.2 04p16.2 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51877 SNORD163 small nucleolar RNA, C/D box 163 non-coding RNA RNA, small nucleolar Approved 17p11.2 17p11.2 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51878 SNORD164 small nucleolar RNA, C/D box 164 non-coding RNA RNA, small nucleolar Approved 11p13 11p13 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51879 SNORD165 small nucleolar RNA, C/D box 165 non-coding RNA RNA, small nucleolar Approved 7p22.1 07p22.1 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51880 SNORD166 small nucleolar RNA, C/D box 166 non-coding RNA RNA, small nucleolar Approved 6q21 06q21 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51881 SNORD167 small nucleolar RNA, C/D box 167 non-coding RNA RNA, small nucleolar Approved 1p36.33 01p36.33 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51882 SNORD168 small nucleolar RNA, C/D box 168 non-coding RNA RNA, small nucleolar Approved 8q24.11 08q24.11 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51883 SNORD169 small nucleolar RNA, C/D box 169 non-coding RNA RNA, small nucleolar Approved 14q24.2 14q24.2 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51884 SNORD170 small nucleolar RNA, C/D box 170 non-coding RNA RNA, small nucleolar Approved 5p15.2 05p15.2 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-09-18 +HGNC:51886 SNORD172 small nucleolar RNA, C/D box 172 non-coding RNA RNA, small nucleolar Approved 10q22.2 10q22.2 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-10-14 2015-10-14 +HGNC:51887 SNORD173 small nucleolar RNA, C/D box 173 non-coding RNA RNA, small nucleolar Approved 8q22.3 08q22.3 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-10-14 2015-10-14 +HGNC:51889 SNORD175 small nucleolar RNA, C/D box 175 non-coding RNA RNA, small nucleolar Approved 19q13.2 19q13.2 SNORD small nucleolar RNA, C/D box 175 Small nucleolar RNAs, C/D box 845 2015-09-18 2015-10-14 2015-10-14 +HGNC:15931 SNPH syntaphilin protein-coding gene gene with protein product Approved 20p13 20p13 bA314N13.5 2001-06-21 2014-11-19 9751 ENSG00000101298 OTTHUMG00000031662 uc002wes.4 NM_014723 "CCDS13012|CCDS82590" O15079 10707983 MGI:2139270 RGD:1305867 SNPH 604942 +HGNC:30598 SNRK SNF related kinase protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "FLJ20224|HSNFRK|KIAA0096" 2005-03-17 2014-11-19 54861 ENSG00000163788 OTTHUMG00000156491 uc003cmt.5 D43636 NM_017719 "CCDS43075|CCDS82759" Q9NRH2 "8654423|7788527" MGI:108104 RGD:69653 SNRK 612760 objectId:2202 +HGNC:41269 SNRK-AS1 SNRK antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.1 03p22.1 SNRK antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100873954 ENSG00000234617 OTTHUMG00000156490 uc031rzb.2 NR_046757 +HGNC:14161 SNRNP25 small nuclear ribonucleoprotein U11/U12 subunit 25 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 U11/U12-25K U11/U12 snRNP 25K C16orf33 "chromosome 16 open reading frame 33|small nuclear ribonucleoprotein 25kDa (U11/U12)|small nuclear ribonucleoprotein, U11/U12 25kDa subunit" 2000-12-21 2008-10-29 2016-03-11 2016-03-11 79622 ENSG00000161981 OTTHUMG00000060720 uc059ofp.1 BC001381 NM_024571 CCDS10396 Q9BV90 15146077 MGI:1925622 RGD:1310922 SNRNP25 +HGNC:30240 SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "RY1|U4/U6.U5-27K" "nucleic acid binding protein RY 1|U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein" "small nuclear ribonucleoprotein 27kDa (U4/U6.U5)|small nuclear ribonucleoprotein, U4/U6.U5 27kDa subunit" 2008-10-29 2016-03-11 2016-10-05 11017 ENSG00000124380 OTTHUMG00000152689 uc002sfw.4 X76302 NM_006857 CCDS33219 Q8WVK2 "7931148|9085842" MGI:1913868 RGD:1310925 SNRNP27 +HGNC:30852 SNRNP35 small nuclear ribonucleoprotein U11/U12 subunit 35 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 U1SNRNPBP U1 snRNP binding protein homolog "small nuclear ribonucleoprotein 35kDa (U11/U12)|small nuclear ribonucleoprotein U11/U12 35kDa subunit" RNA binding motif containing 725 2008-10-29 2016-03-11 2016-03-11 11066 ENSG00000184209 OTTHUMG00000167584 uc001ufb.2 BC054034 NM_007020 "CCDS9249|CCDS45005" Q16560 "10520751|8889548" MGI:1923417 RGD:1310724 SNRNP35 +HGNC:30857 SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "PRP8BP|SPF38|PRPF8BP|HPRP8BP" WDR57 "WD repeat domain 57 (U5 snRNP specific)|small nuclear ribonucleoprotein 40kDa (U5)|small nuclear ribonucleoprotein, U5 40kDa subunit" WD repeat domain containing 362 2005-04-28 2008-10-29 2016-03-11 2016-03-11 9410 ENSG00000060688 OTTHUMG00000003790 uc001bso.4 AF090988 NM_004814 CCDS340 Q96DI7 "9774689|9731529|10788320" MGI:1913835 RGD:1309198 SNRNP40 607797 +HGNC:21368 SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 "FLJ32234|dJ512B11.2|dJ336K20B.1" U11/U12 snRNP 48K C6orf151 "chromosome 6 open reading frame 151|small nuclear ribonucleoprotein 48kDa (U11/U12)|small nuclear ribonucleoprotein, U11/U12 48KDa subunit" 2003-06-11 2008-10-29 2016-03-11 2016-03-11 154007 ENSG00000168566 OTTHUMG00000014213 uc003mxr.3 AK056796 NM_152551 CCDS4502 Q6IEG0 15146077 MGI:1915047 RGD:1309020 SNRNP48 +HGNC:11150 SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "U1-70K|Snp1" "RNPU1Z|RPU1|SNRP70" "small nuclear ribonucleoprotein 70kDa (RNP antigen)|small nuclear ribonucleoprotein 70kDa (U1)|small nuclear ribonucleoprotein, U1 70kDa subunit" RNA binding motif containing 725 1988-04-28 2008-10-29 2016-03-11 2016-10-05 6625 ENSG00000104852 OTTHUMG00000183344 uc002pmk.4 NM_003089 "CCDS12756|CCDS74417" P08621 MGI:98341 RGD:1307120 SNRNP70 180740 +HGNC:30859 SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "U5-200KD|HELIC2|KIAA0788|BRR2" "U5 snRNP specific protein, 200 KD|bad response to refrigeration 2 homolog (S. cerevisiae)" "ASCC3L1|RP33" "activating signal cointegrator 1 complex subunit 3-like 1|retinitis pigmentosa 33 (autosomal dominant)|small nuclear ribonucleoprotein 200kDa (U5)|small nuclear ribonucleoprotein, U5 200kDa subunit" RNA helicases 1168 2004-08-26 2008-10-29 2016-03-11 2016-06-03 23020 ENSG00000144028 OTTHUMG00000130455 uc002svu.4 AL831994 NM_014014 CCDS2020 O75643 "9872452|8670905|9774689|9539711|16612614|19878916" MGI:2444401 RGD:1561120 SNRNP200 601664 221348 +HGNC:11151 SNRPA small nuclear ribonucleoprotein polypeptide A protein-coding gene gene with protein product Approved 19q13.1 19q13.1 "U1A|U1-A|Mud1" RNA binding motif containing 725 1989-06-30 2014-11-19 6626 ENSG00000077312 OTTHUMG00000182689 uc002ooz.4 X06347 NM_004596 CCDS12565 P09012 1701111 MGI:1855690 RGD:1307416 SNRPA 182285 +HGNC:11152 SNRPA1 small nuclear ribonucleoprotein polypeptide A' protein-coding gene gene with protein product Approved 15q26.3 15q26.3 Lea1 1988-11-28 2014-11-19 6627 ENSG00000131876 OTTHUMG00000149871 uc002bww.4 AJ130971 NM_003090 CCDS10391 P09661 2928112 MGI:1916231 RGD:2320494 SNRPA1 603521 +HGNC:11153 SNRPB small nuclear ribonucleoprotein polypeptides B and B1 protein-coding gene gene with protein product Approved 20p13 20p13 "COD|SmB/SmB'|Sm-B/B'|snRNP-B" SNRPB1 1988-11-28 2015-09-02 6628 ENSG00000125835 OTTHUMG00000031694 uc002wfz.2 NM_003091 "CCDS13026|CCDS13027" P14678 1376292 MGI:98342 RGD:621301 SNRPB 182282 411411 +HGNC:11155 SNRPB2 small nuclear ribonucleoprotein polypeptide B2 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "Msl1|U2B''" "small nuclear ribonucleoprotein polypeptide B2|small nuclear ribonucleoprotein polypeptide B''|small nuclear ribonucleoprotein polypeptide B" RNA binding motif containing 725 1990-06-13 2016-04-06 2016-04-06 6629 ENSG00000125870 OTTHUMG00000031933 uc002wph.3 NM_003092 CCDS13123 P08579 2951739 MGI:104805 RGD:1310194 SNRPB2 603520 +HGNC:11156 SNRPBL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-09-29 +HGNC:38665 SNRPBP1 small nuclear ribonucleoprotein polypeptides B and B1 pseudogene 1 pseudogene pseudogene Approved 7q21.11 07q21.11 2010-07-07 2014-11-19 100499258 ENSG00000223550 OTTHUMG00000155381 NG_023439 +HGNC:11157 SNRPC small nuclear ribonucleoprotein polypeptide C protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "U1-C|Yhc1" 1989-06-30 2016-10-05 6631 ENSG00000124562 OTTHUMG00000014555 uc003ojt.3 NM_003093 CCDS34436 P09234 "2971157|8532530" MGI:109489 RGD:1306065 SNRPC 603522 +HGNC:49816 SNRPCP1 small nuclear ribonucleoprotein polypeptide C pseudogene 1 pseudogene pseudogene Approved 9p21.1 09p21.1 2014-03-06 2014-03-06 100288596 ENSG00000238001 OTTHUMG00000019748 NG_013309 PGOHUM00000236008 +HGNC:49817 SNRPCP2 small nuclear ribonucleoprotein polypeptide C pseudogene 2 pseudogene pseudogene Approved 5q13.3 05q13.3 2014-03-06 2014-03-06 100129566 ENSG00000251235 OTTHUMG00000162431 NG_013307 PGOHUM00000235661 +HGNC:49818 SNRPCP3 small nuclear ribonucleoprotein polypeptide C pseudogene 3 pseudogene pseudogene Approved 3q25.1 03q25.1 2014-03-06 2014-03-06 100128469 ENSG00000244668 OTTHUMG00000159850 NG_013315 PGOHUM00000237820 +HGNC:49819 SNRPCP4 small nuclear ribonucleoprotein polypeptide C pseudogene 4 pseudogene pseudogene Approved 18p11.31 18p11.31 2014-03-06 2014-03-06 100310848 ENSG00000264186 OTTHUMG00000178282 NG_013310 PGOHUM00000234972 +HGNC:49820 SNRPCP5 small nuclear ribonucleoprotein polypeptide C pseudogene 5 pseudogene pseudogene Approved 11p15.4 11p15.4 2014-03-06 2014-03-06 106480290 ENSG00000255522 OTTHUMG00000166988 NG_044183 +HGNC:49821 SNRPCP6 small nuclear ribonucleoprotein polypeptide C pseudogene 6 pseudogene pseudogene Approved 8p23.1 08p23.1 2014-03-06 2014-03-06 100310856 ENSG00000254683 OTTHUMG00000165381 NG_013320 +HGNC:49822 SNRPCP7 small nuclear ribonucleoprotein polypeptide C pseudogene 7 pseudogene pseudogene Approved 12p13.31 12p13.31 2014-03-06 2014-03-06 100310852 NG_013316 +HGNC:49823 SNRPCP8 small nuclear ribonucleoprotein polypeptide C pseudogene 8 pseudogene pseudogene Approved 3q22.1 03q22.1 2014-03-06 2014-03-06 100310851 ENSG00000250580 OTTHUMG00000159925 NG_013326 +HGNC:49824 SNRPCP9 small nuclear ribonucleoprotein polypeptide C pseudogene 9 pseudogene pseudogene Approved 7q21.3 07q21.3 2014-03-06 2014-03-06 100310853 ENSG00000231812 OTTHUMG00000154122 NG_013317 +HGNC:49825 SNRPCP10 small nuclear ribonucleoprotein polypeptide C pseudogene 10 pseudogene pseudogene Approved 3p12.3 03p12.3 2014-03-06 2014-03-06 106481701 ENSG00000243794 OTTHUMG00000158853 NG_043214 +HGNC:49826 SNRPCP11 small nuclear ribonucleoprotein polypeptide C pseudogene 11 pseudogene pseudogene Approved 3q21.2 03q21.2 2014-03-06 2014-03-06 100310850 ENSG00000241346 OTTHUMG00000159573 NG_013313 +HGNC:49827 SNRPCP12 small nuclear ribonucleoprotein polypeptide C pseudogene 12 pseudogene pseudogene Approved 11q13.2 11q13.2 2014-03-06 2014-03-06 100310854 NG_013318 +HGNC:49828 SNRPCP13 small nuclear ribonucleoprotein polypeptide C pseudogene 13 pseudogene pseudogene Approved 4p16.1 04p16.1 2014-03-06 2014-03-06 106481786 ENSG00000249799 OTTHUMG00000160247 NG_043883 +HGNC:49829 SNRPCP14 small nuclear ribonucleoprotein polypeptide C pseudogene 14 pseudogene pseudogene Approved 11q13.4 11q13.4 2014-03-06 2014-03-06 100310855 ENSG00000254805 OTTHUMG00000167459 NG_013319 +HGNC:49830 SNRPCP15 small nuclear ribonucleoprotein polypeptide C pseudogene 15 pseudogene pseudogene Approved 8p23.1 08p23.1 2014-03-06 2014-03-06 100310857 ENSG00000230106 OTTHUMG00000150580 NG_013321 +HGNC:49831 SNRPCP16 small nuclear ribonucleoprotein polypeptide C pseudogene 16 pseudogene pseudogene Approved 4p16.1 04p16.1 2014-03-06 2014-03-06 106480291 ENSG00000250342 OTTHUMG00000160097 NG_045751 +HGNC:49832 SNRPCP17 small nuclear ribonucleoprotein polypeptide C pseudogene 17 pseudogene pseudogene Approved 8p23.1 08p23.1 2014-03-06 2014-03-06 106481702 ENSG00000254311 OTTHUMG00000163645 NG_043224 +HGNC:49833 SNRPCP18 small nuclear ribonucleoprotein polypeptide C pseudogene 18 pseudogene pseudogene Approved 15q26.3 15q26.3 2014-03-06 2014-03-06 100289564 ENSG00000259464 OTTHUMG00000171903 NG_013311 PGOHUM00000247291 +HGNC:49834 SNRPCP19 small nuclear ribonucleoprotein polypeptide C pseudogene 19 pseudogene pseudogene Approved 7p15.3 07p15.3 2014-03-06 2014-03-06 100310849 ENSG00000234999 OTTHUMG00000152583 NG_013312 +HGNC:49835 SNRPCP20 small nuclear ribonucleoprotein polypeptide C pseudogene 20 pseudogene pseudogene Approved 16p13.3 16p13.3 2014-03-06 2014-03-06 106480292 ENSG00000267182 OTTHUMG00000177253 NG_044195 +HGNC:11158 SNRPD1 small nuclear ribonucleoprotein D1 polypeptide protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "HsT2456|Sm-D1" SNRPD "small nuclear ribonucleoprotein D1 polypeptide (16kD)|small nuclear ribonucleoprotein D1 polypeptide 16kDa" 1990-06-13 2015-11-09 2015-11-09 6632 ENSG00000167088 OTTHUMG00000178934 uc002ktj.2 L36188 NM_006938 CCDS32801 P62314 "7527560|1701240" MGI:98344 RGD:1306345 SNRPD1 601063 +HGNC:11159 SNRPD2 small nuclear ribonucleoprotein D2 polypeptide protein-coding gene gene with protein product Approved 19q13.2-q13.3 19q13.2-q13.3 Sm-D2 snRNP core protein D2 SNRPD1 "small nuclear ribonucleoprotein D2 polypeptide (16.5kD)|small nuclear ribonucleoprotein D2 polypeptide 16.5kDa" 1990-06-13 2015-11-09 2015-11-09 6633 ENSG00000125743 OTTHUMG00000182130 uc002pcw.4 NM_004597 "CCDS33053|CCDS54281" P62316 "7527560|1701240" MGI:98345 RGD:1593018 SNRPD2 601061 +HGNC:31459 SNRPD2P1 small nuclear ribonucleoprotein D2 pseudogene 1 pseudogene pseudogene Approved 10q23.31 10q23.31 bA478K7.1 SNRPD2P small nuclear ribonucleoprotein D2 pseudogene 2004-05-27 2010-06-28 2010-06-28 2014-11-19 119358 ENSG00000228938 OTTHUMG00000018727 NG_023172 SNRPD2P1 PGOHUM00000238885 +HGNC:38598 SNRPD2P2 small nuclear ribonucleoprotein D2 pseudogene 2 pseudogene pseudogene Approved 1q42.2 01q42.2 2010-06-28 2014-11-19 645339 ENSG00000223982 OTTHUMG00000039489 NR_033826 PGOHUM00000244478 +HGNC:11160 SNRPD3 small nuclear ribonucleoprotein D3 polypeptide protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "SMD3|Sm-D3" "small nuclear ribonucleoprotein D3 polypeptide (18kD)|small nuclear ribonucleoprotein D3 polypeptide 18kDa" 1995-04-26 2015-11-09 2015-11-09 6634 ENSG00000100028 OTTHUMG00000150727 uc003aam.3 U15009 NM_004175 CCDS13828 P62318 "1701240|7527560" MGI:1914582 RGD:1597573 SNRPD3 601062 +HGNC:11161 SNRPE small nuclear ribonucleoprotein polypeptide E protein-coding gene gene with protein product Approved 1q32.1 01q32.1 Sm-E 1988-11-28 2016-10-05 6635 ENSG00000182004 OTTHUMG00000035985 uc001hai.4 M37716 NM_003094 CCDS30979 P62304 "1835977|2143747" MGI:98346 RGD:2321675 SNRPE 128260 322852 +HGNC:35244 SNRPEP1 small nuclear ribonucleoprotein polypeptide E pseudogene 1 pseudogene pseudogene Approved 5q33.3 05q33.3 2008-10-30 2008-10-30 100129454 M65126 NG_008773 1839226 +HGNC:20733 SNRPEP2 small nuclear ribonucleoprotein polypeptide E pseudogene 2 pseudogene pseudogene Approved 9p24.1 09p24.1 bA390F4.4 SNRPEL1 small nuclear ribonucleoprotein polypeptide E-like 1 2004-05-27 2011-11-09 2011-11-09 2014-11-18 414153 ENSG00000256968 OTTHUMG00000019531 NG_006656 +HGNC:43445 SNRPEP3 small nuclear ribonucleoprotein polypeptide E pseudogene 3 pseudogene pseudogene Approved 16p12.3 16p12.3 2011-11-10 2012-10-05 100129329 ENSG00000227624 OTTHUMG00000177692 NG_008888 PGOHUM00000248750 +HGNC:43446 SNRPEP4 small nuclear ribonucleoprotein polypeptide E pseudogene 4 pseudogene pseudogene Approved 19p13.3 19p13.3 2011-11-10 2016-07-25 100130109 ENSG00000233270 OTTHUMG00000186872 NG_023307 +HGNC:43447 SNRPEP5 small nuclear ribonucleoprotein polypeptide E pseudogene 5 pseudogene pseudogene Approved 2p25.1 02p25.1 2011-11-10 2011-11-10 100874413 ENSG00000225642 OTTHUMG00000151628 NG_032554 PGOHUM00000240576 +HGNC:43571 SNRPEP6 small nuclear ribonucleoprotein polypeptide E pseudogene 6 pseudogene pseudogene Approved 6q24.3 06q24.3 2011-11-10 2011-11-10 100874414 ENSG00000217824 OTTHUMG00000015775 NG_032556 PGOHUM00000243411 +HGNC:43572 SNRPEP7 small nuclear ribonucleoprotein polypeptide E pseudogene 7 pseudogene pseudogene Approved 1p36.11 01p36.11 2011-11-10 2011-11-10 100874415 ENSG00000225990 OTTHUMG00000004281 NG_032557 PGOHUM00000244648 +HGNC:43573 SNRPEP8 small nuclear ribonucleoprotein polypeptide E pseudogene 8 pseudogene pseudogene Approved 10q21.1 10q21.1 2011-11-10 2011-11-10 100874423 ENSG00000231399 OTTHUMG00000018256 NG_032558 PGOHUM00000238801 +HGNC:43574 SNRPEP9 small nuclear ribonucleoprotein polypeptide E pseudogene 9 pseudogene pseudogene Approved Xp22.11 Xp22.11 2011-11-10 2011-11-10 100874416 ENSG00000214124 OTTHUMG00000021268 NG_032559 PGOHUM00000241667 +HGNC:43575 SNRPEP10 small nuclear ribonucleoprotein polypeptide E pseudogene 10 pseudogene pseudogene Approved 1q41 01q41 2011-11-10 2011-11-10 100874424 ENSG00000227002 OTTHUMG00000037377 NG_032560 PGOHUM00000244445 +HGNC:11162 SNRPF small nuclear ribonucleoprotein polypeptide F protein-coding gene gene with protein product Approved 12q23.1 12q23.1 Sm-F 1990-06-13 2011-10-11 6636 ENSG00000139343 OTTHUMG00000170351 uc001tej.5 X85372 NM_003095 CCDS9055 P62306 7744013 MGI:1917128 RGD:1588229 SNRPF 603541 +HGNC:16551 SNRPFP1 small nuclear ribonucleoprotein polypeptide F pseudogene 1 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ1041C10.2 2001-09-17 2011-03-22 170550 ENSG00000231878 OTTHUMG00000032701 AL162615 NG_001056 PGOHUM00000247558 +HGNC:39665 SNRPFP2 small nuclear ribonucleoprotein polypeptide F pseudogene 2 pseudogene pseudogene Approved 1p36.11 01p36.11 2011-03-22 2014-11-18 100874411 ENSG00000229786 OTTHUMG00000156992 NG_032338 PGOHUM00000244640 +HGNC:39666 SNRPFP3 small nuclear ribonucleoprotein polypeptide F pseudogene 3 pseudogene pseudogene Approved 13q21.33 13q21.33 2011-03-22 2014-11-18 100874422 ENSG00000225501 OTTHUMG00000017051 NG_032339 PGOHUM00000248429 +HGNC:39667 SNRPFP4 small nuclear ribonucleoprotein polypeptide F pseudogene 4 pseudogene pseudogene Approved 3p21.31 03p21.31 2011-03-22 2014-11-18 100874412 ENSG00000235627 OTTHUMG00000156827 NG_032340 PGOHUM00000238027 +HGNC:11163 SNRPG small nuclear ribonucleoprotein polypeptide G protein-coding gene gene with protein product Approved 2p13.3 02p13.3 Sm-G 1990-06-13 2015-09-02 6637 ENSG00000143977 OTTHUMG00000129670 uc002sgp.4 X85373 XM_017004774 "CCDS1903|CCDS82461|CCDS82462|CCDS82463" P62308 7744013 MGI:1915261 RGD:1584713 SNRPG 603542 +HGNC:20033 SNRPGP1 small nuclear ribonucleoprotein polypeptide G pseudogene 1 pseudogene pseudogene Approved 14q22.1 14q22.1 SNRPGP small nuclear ribonucleoprotein polypeptide G pseudogene 2003-01-13 2010-11-29 2010-11-29 2014-11-19 326272 ENSG00000258577 OTTHUMG00000170979 NG_002533 PGOHUM00000247798 +HGNC:30999 SNRPGP2 small nuclear ribonucleoprotein polypeptide G pseudogene 2 pseudogene pseudogene Approved 18q21.2 18q21.2 HsT2742 2004-01-05 2014-11-19 100130003 ENSG00000264350 OTTHUMG00000179764 NG_027990 PGOHUM00000234937 +HGNC:39322 SNRPGP3 small nuclear ribonucleoprotein polypeptide G pseudogene 3 pseudogene pseudogene Approved 7q32.1 07q32.1 2010-11-29 2010-11-29 100874407 ENSG00000239919 OTTHUMG00000157694 NG_032250 PGOHUM00000233568 +HGNC:39323 SNRPGP4 small nuclear ribonucleoprotein polypeptide G pseudogene 4 pseudogene pseudogene Approved 17q24.3 17q24.3 2010-11-29 2010-11-29 100130368 ENSG00000267203 OTTHUMG00000180310 NG_028970 PGOHUM00000237498 +HGNC:39324 SNRPGP5 small nuclear ribonucleoprotein polypeptide G pseudogene 5 pseudogene pseudogene Approved 10p13 10p13 2010-11-29 2010-11-29 100874418 ENSG00000235763 OTTHUMG00000017684 NG_032251 PGOHUM00000238351 +HGNC:39325 SNRPGP6 small nuclear ribonucleoprotein polypeptide G pseudogene 6 pseudogene pseudogene Approved 10q25.3 10q25.3 2010-11-29 2010-11-29 100861574 ENSG00000205433 OTTHUMG00000019099 NG_032066 PGOHUM00000238930 +HGNC:39326 SNRPGP7 small nuclear ribonucleoprotein polypeptide G pseudogene 7 pseudogene pseudogene Approved 2p23.2 02p23.2 2010-11-29 2010-11-29 100874408 ENSG00000242915 OTTHUMG00000159107 NG_032252 PGOHUM00000240004 +HGNC:39327 SNRPGP8 small nuclear ribonucleoprotein polypeptide G pseudogene 8 pseudogene pseudogene Approved 2q36.3 02q36.3 2010-11-29 2010-11-29 100874409 ENSG00000226718 OTTHUMG00000153554 NG_032253 PGOHUM00000240542 +HGNC:39328 SNRPGP9 small nuclear ribonucleoprotein polypeptide G pseudogene 9 pseudogene pseudogene Approved 2q13 02q13 2010-11-29 2016-10-05 100506574 ENSG00000228551 OTTHUMG00000153438 NG_028932 PGOHUM00000240843 +HGNC:39329 SNRPGP10 small nuclear ribonucleoprotein polypeptide G pseudogene 10 pseudogene pseudogene Approved 1q32.1 01q32.1 2010-11-29 2010-11-29 100130289 ENSG00000235363 OTTHUMG00000037198 NG_028930 PGOHUM00000245176 +HGNC:39330 SNRPGP11 small nuclear ribonucleoprotein polypeptide G pseudogene 11 pseudogene pseudogene Approved 13q14.3 13q14.3 2010-11-29 2010-11-29 100874426 ENSG00000229906 OTTHUMG00000016947 NG_032254 PGOHUM00000248401 +HGNC:39331 SNRPGP12 small nuclear ribonucleoprotein polypeptide G pseudogene 12 pseudogene pseudogene Approved 10q25.2 10q25.2 2010-11-29 2016-10-05 100874427 ENSG00000226734 OTTHUMG00000019031 NG_032255 PGOHUM00000258505 +HGNC:39332 SNRPGP13 small nuclear ribonucleoprotein polypeptide G pseudogene 13 pseudogene pseudogene Approved 21q22.2 21q22.2 2010-11-29 2013-10-18 100874428 ENSG00000231480 OTTHUMG00000090770 NG_032256 PGOHUM00000259676 +HGNC:42039 SNRPGP14 small nuclear ribonucleoprotein polypeptide G pseudogene 14 pseudogene pseudogene Approved 13q14.2 13q14.2 2011-06-01 2013-10-18 100874434 ENSG00000236577 OTTHUMG00000016917 NG_032395 +HGNC:49371 SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 pseudogene pseudogene Approved 19p13.12 19p13.12 2013-10-18 2013-10-18 2014-02-12 100130932 ENSG00000224543 OTTHUMG00000183288 NG_029827 A8MWD9 PGOHUM00000234525 +HGNC:49373 SNRPGP16 small nuclear ribonucleoprotein polypeptide G pseudogene 16 pseudogene pseudogene Approved 11q14.3 11q14.3 2013-10-18 2013-10-18 106480270 ENSG00000255287 OTTHUMG00000167362 NG_044022 PGOHUM00000242859 +HGNC:49372 SNRPGP17 small nuclear ribonucleoprotein polypeptide G pseudogene 17 pseudogene pseudogene Approved 17q22 17q22 2013-10-18 2013-10-18 106481685 ENSG00000271063 OTTHUMG00000184894 NG_043079 PGOHUM00000237448 +HGNC:49374 SNRPGP18 small nuclear ribonucleoprotein polypeptide G pseudogene 18 pseudogene pseudogene Approved 12q24.21 12q24.21 2013-10-18 2013-10-18 2014-02-12 106480680 ENSG00000257979 OTTHUMG00000169455 NG_043242 PGOHUM00000239938 +HGNC:49375 SNRPGP19 small nuclear ribonucleoprotein polypeptide G pseudogene 19 pseudogene pseudogene Approved 11q13.1 11q13.1 2013-10-18 2013-10-18 106481686 ENSG00000270526 OTTHUMG00000184809 NG_043091 PGOHUM00000242330 +HGNC:49376 SNRPGP20 small nuclear ribonucleoprotein polypeptide G pseudogene 20 pseudogene pseudogene Approved 12q21.31 12q21.31 2013-10-18 2013-10-18 106480271 ENSG00000271496 OTTHUMG00000184774 NG_044031 PGOHUM00000239527 +HGNC:11164 SNRPN small nuclear ribonucleoprotein polypeptide N protein-coding gene gene with protein product Approved 15q11.2 15q11.2 "SMN|SM-D|HCERN3|SNRNP-N|SNURF-SNRPN|RT-LI" "tissue-specific splicing protein|SM protein N|small nuclear ribonucleoprotein N" PWCR Prader-Willi syndrome chromosome region 1992-08-24 2014-11-18 6638 ENSG00000128739 OTTHUMG00000129180 uc001ywp.1 L80005 NM_003097 CCDS10017 P63162 1533223 MGI:98347 RGD:621306 SNRPN 182279 119771 +HGNC:11165 SNRPNL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-12-05 +HGNC:11166 SNRPNP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:11167 SNTA1 syntrophin alpha 1 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "TACIP1|LQT12" "pro-TGF-alpha cytoplasmic domain-interacting protein 1|dystrophin-associated protein A1, 59kDa, acidic component" SNT1 syntrophin, alpha 1 (dystrophin-associated protein A1, 59kD, acidic component) PDZ domain containing 1220 1994-12-14 2016-01-14 2016-10-12 6640 ENSG00000101400 OTTHUMG00000032259 uc002wzd.2 U40571 NM_003098 CCDS13220 Q13424 "8576247|8612778" MGI:101772 RGD:1307068 "SNTA1 database at LOVD-China|http://genomed.org/LOVD/LQTs/home.php?select_db=SNTA1|LRG_332|http://www.lrg-sequence.org/LRG/LRG_332" SNTA1 601017 218358 +HGNC:11168 SNTB1 syntrophin beta 1 protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "59-DAP|A1B|BSYN2|TIP-43|SNT2" tax interaction protein 43 SNT2B1 syntrophin, beta 1 (dystrophin-associated protein A1, 59kDa, basic component 1) "Pleckstrin homology domain containing|PDZ domain containing" "682|1220" 1994-12-14 2016-01-14 2016-10-05 6641 ENSG00000172164 OTTHUMG00000165041 uc010mdg.4 AF028828 NM_021021 CCDS6334 Q13884 "8183929|9482110" MGI:101781 RGD:1307728 SNTB1 600026 +HGNC:11169 SNTB2 syntrophin beta 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "EST25263|SNT3" "SNT2B2|SNTL|D16S2531E" syntrophin, beta 2 (dystrophin-associated protein A1, 59kDa, basic component 2) PDZ domain containing 1220 1994-12-14 2016-01-14 2016-01-14 6645 ENSG00000168807 OTTHUMG00000137567 uc002ewu.4 U40572 XR_001751970 CCDS10873 Q13425 "8576247|8183929" MGI:101771 RGD:1592340 SNTB2 600027 +HGNC:13740 SNTG1 syntrophin gamma 1 protein-coding gene gene with protein product Approved 8q11.21 08q11.21 "SYN4|G1SYN" PDZ domain containing 1220 2000-10-20 2016-01-14 2016-01-14 54212 ENSG00000147481 OTTHUMG00000164257 uc010lxy.3 AJ003030 NM_018967 "CCDS6147|CCDS75737" Q9NSN8 10747910 MGI:1918346 RGD:1560290 SNTG1 608714 +HGNC:13741 SNTG2 syntrophin gamma 2 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 "SYN5|G2SYN" PDZ domain containing 1220 2000-10-20 2016-01-14 2016-10-05 54221 ENSG00000172554 OTTHUMG00000151370 uc002qwq.4 AJ003029 NM_018968 CCDS46220 Q9NY99 10747910 MGI:1919541 RGD:1311276 SNTG2 608715 +HGNC:33706 SNTN sentan, cilia apical structure protein protein-coding gene gene with protein product Approved 3p14.2 03p14.2 "FLJ44379|S100AL" S100A-like protein 2009-03-10 2009-03-10 2015-08-26 132203 ENSG00000188817 OTTHUMG00000158766 uc003dlr.4 AK126350 NM_001080537 CCDS33779 A6NMZ2 18829862 MGI:3045373 RGD:1562356 SNTN +HGNC:7819 SNU13 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "FA-1|SPAG12|SNRNP15-5|15.5K" small nuclear ribonucleoprotein 15.5kDa (U4/U6.U5) "SSFA1|NHP2L1" "non-histone chromosome protein 2 (S. cerevisiae)-like 1|sperm specific antigen 1|NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)" 1995-06-14 2015-07-10 2015-07-10 2016-10-12 4809 ENSG00000100138 OTTHUMG00000151189 NM_001003796 "CCDS14022|CCDS33653" P55769 "8978773|17412961|17636026" MGI:893586 RGD:1303103 LRG_1102|http://www.lrg-sequence.org/LRG/LRG_1102 601304 +HGNC:14245 SNUPN snurportin 1 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "SNURPORTIN-1|Snurportin1" RNUT1 RNA, U transporter 1 2001-01-10 2006-07-14 2006-07-14 2014-11-19 10073 ENSG00000169371 OTTHUMG00000142833 uc002baq.4 AF039029 NM_005701 CCDS10281 O95149 9670026 MGI:1913319 RGD:1303191 SNUPN 607902 +HGNC:11171 SNURF SNRPN upstream reading frame protein-coding gene gene with protein product Approved 15q11.2 15q11.2 1999-01-07 2015-08-03 8926 ENSG00000273173 OTTHUMG00000186421 uc001ywu.4 NM_005678 CCDS10016 Q9Y675 10318933 MGI:1891236 RGD:69269 SNURF +HGNC:29543 SNURFL SNRPN upstream reading frame-like (pseudogene) pseudogene pseudogene Approved Xq27.1 Xq27.1 CXorf19 "chromosome X open reading frame 19|SNRPN upstream reading frame-like" 2006-06-30 2010-12-08 2016-01-06 2016-09-27 727686 ENSG00000173954 OTTHUMG00000022534 NG_005696 B1AK76 +HGNC:16696 SNW1 SNW domain containing 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "NCoA-62|SKIP|Prp45|PRPF45|Bx42" SKIIP SKI interacting protein 2004-05-25 2005-09-13 2005-09-13 2015-01-28 22938 ENSG00000100603 OTTHUMG00000171527 uc001xuf.4 AF045184 NM_012245 "CCDS9867|CCDS81830" Q13573 "8973337|9632709" MGI:1913604 RGD:1561926 SNW1 603055 +HGNC:11172 SNX1 sorting nexin 1 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "SNX1A|MGC8664|HsT17379|Vps5" "Sorting nexins|PX-BAR domain containing" "754|1290" 1996-07-17 2015-08-26 6642 ENSG00000028528 OTTHUMG00000172436 uc059keu.1 BC000357 NM_003099 "CCDS32266|CCDS32268|CCDS58371" Q13596 8638121 MGI:1928395 RGD:68935 SNX1 601272 +HGNC:11173 SNX2 sorting nexin 2 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 "Sorting nexins|PX-BAR domain containing" "754|1290" 1996-07-17 2015-08-26 6643 ENSG00000205302 OTTHUMG00000163020 uc003kte.5 AF043453 NM_003100 "CCDS34217|CCDS64234" O60749 9819414 MGI:1915054 RGD:1310291 SNX2 605929 +HGNC:41514 SNX2P1 sorting nexin 2 pseudogene 1 pseudogene pseudogene Approved 1q41 01q41 2011-05-03 2011-05-03 100418968 NG_027207 PGOHUM00000245208 +HGNC:41515 SNX2P2 sorting nexin 2 pseudogene 2 pseudogene pseudogene Approved 7p14.3 07p14.3 2011-05-03 2011-05-03 100873785 ENSG00000236460 OTTHUMG00000152897 NG_032371 PGOHUM00000250928 +HGNC:11174 SNX3 sorting nexin 3 protein-coding gene gene with protein product Approved 6q21 06q21 Grd19 Sorting nexins 754 1999-02-16 2015-09-02 8724 ENSG00000112335 OTTHUMG00000015323 uc003psh.4 AF034546 NM_152827 "CCDS5064|CCDS5065|CCDS75501" O60493 9819414 MGI:1860188 RGD:1595151 SNX3 605930 +HGNC:41516 SNX3P1X sorting nexin 3 pseudogene 1, X-linked pseudogene pseudogene Approved Xq21.31 Xq21.31 2011-05-03 2011-05-03 100873884 ENSG00000230543 OTTHUMG00000021967 NG_032372 PGOHUM00000241445 +HGNC:41517 SNX3P1Y sorting nexin 3 pseudogene 1, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 2011-05-03 2015-07-22 100873885 ENSG00000278585 OTTHUMG00000187995 NG_032373 PGOHUM00000305422 +HGNC:11175 SNX4 sorting nexin 4 protein-coding gene gene with protein product Approved 3q21.2 03q21.2 ATG24B "Sorting nexins|Autophagy related|PX-BAR domain containing" "754|1022|1290" 1999-02-16 2014-02-12 8723 ENSG00000114520 OTTHUMG00000159575 uc003eib.5 AF065485 NM_003794 CCDS3032 O95219 9819414 MGI:1916400 RGD:1309763 SNX4 605931 +HGNC:14969 SNX5 sorting nexin 5 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "Sorting nexins|PX-BAR domain containing" "754|1290" 2001-04-10 2016-10-05 27131 ENSG00000089006 OTTHUMG00000031953 uc002wqd.5 AF121855 NM_152227 CCDS13130 Q9Y5X3 "10600472|17148574" MGI:1916428 RGD:1310190 SNX5 605937 +HGNC:41512 SNX5P1 sorting nexin 5 pseudogene 1 pseudogene pseudogene Approved 4q21.1 04q21.1 2011-05-03 2011-05-03 100131940 ENSG00000249858 OTTHUMG00000160833 NG_009130 PGOHUM00000245967 +HGNC:41513 SNX5P2 sorting nexin 5 pseudogene 2 pseudogene pseudogene Approved 12q23.1 12q23.1 2011-05-03 2011-05-03 728467 NG_009120 PGOHUM00000239905 +HGNC:14970 SNX6 sorting nexin 6 protein-coding gene gene with protein product Approved 14q13.1 14q13.1 "Sorting nexins|PX-BAR domain containing" "754|1290" 2001-04-10 2016-10-05 58533 ENSG00000129515 OTTHUMG00000140213 uc001wsf.2 AF121856 XR_001750485 "CCDS9648|CCDS41942" Q9UNH7 11279102 MGI:1919433 RGD:1304647 SNX6 606098 +HGNC:41511 SNX6P1 sorting nexin 6 pseudogene 1 pseudogene pseudogene Approved 19p12 19p12 2011-05-03 2016-07-25 126506 ENSG00000267920 OTTHUMG00000183229 NG_002348 PGOHUM00000294958 +HGNC:14971 SNX7 sorting nexin 7 protein-coding gene gene with protein product Approved 1p21.3 01p21.3 "Sorting nexins|PX-BAR domain containing" "754|1290" 2001-04-10 2016-10-05 51375 ENSG00000162627 OTTHUMG00000010723 uc010ouc.3 AF121857 XM_006710677 "CCDS755|CCDS756" Q9UNH6 MGI:1923811 RGD:1305480 SNX7 614904 +HGNC:14972 SNX8 sorting nexin 8 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 Mvp1 "Sorting nexins|PX-BAR domain containing" "754|1290" 2001-04-10 2015-08-26 29886 ENSG00000106266 OTTHUMG00000151512 uc003slw.3 AF121858 XM_011515329 CCDS5331 Q9Y5X2 MGI:2443816 RGD:1305791 SNX8 614905 +HGNC:14973 SNX9 sorting nexin 9 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "SH3PX1|SDP1|SH3PXD3A" "Sorting nexins|PX-BAR domain containing" "754|1290" 2001-04-10 2015-02-02 51429 ENSG00000130340 OTTHUMG00000015903 uc063smv.1 AF121859 XM_005267015 CCDS5253 Q9Y5X1 "10531379|17609109" MGI:1913866 RGD:1584466 SNX9 605952 +HGNC:14974 SNX10 sorting nexin 10 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 Sorting nexins 754 2001-04-10 2014-11-18 29887 ENSG00000086300 OTTHUMG00000023650 uc010kuu.4 AF121860 XM_017012085 "CCDS5399|CCDS56470" Q9Y5X0 17012226 MGI:1919232 RGD:1305782 SNX10 614780 299652 +HGNC:14975 SNX11 sorting nexin 11 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 Sorting nexins 754 2001-04-10 2011-05-03 29916 ENSG00000002919 OTTHUMG00000178822 uc002inf.2 AF121861 XM_011524697 "CCDS11526|CCDS82152" Q9Y5W9 MGI:1921729 RGD:1307319 SNX11 614906 +HGNC:14976 SNX12 sorting nexin 12 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 Sorting nexins 754 2001-04-10 2015-09-02 29934 ENSG00000147164 OTTHUMG00000021786 uc031tjx.2 AF171229 NM_013346 "CCDS14405|CCDS59169" Q9UMY4 MGI:1919331 RGD:1565585 SNX12 300883 +HGNC:21335 SNX13 sorting nexin 13 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "RGS-PX1|KIAA0713" Sorting nexins 754 2003-09-04 2014-11-19 23161 ENSG00000071189 OTTHUMG00000152730 uc003stv.4 AF420470 NM_015132 CCDS47551 Q9Y5W8 "11485546|11729322" MGI:2661416 RGD:1309778 SNX13 606589 +HGNC:14977 SNX14 sorting nexin 14 protein-coding gene gene with protein product Approved 6q14.3 06q14.3 RGS-PX2 Sorting nexins 754 2003-09-04 2016-10-05 57231 ENSG00000135317 OTTHUMG00000015140 uc003pkr.4 AF121863 NM_153816 "CCDS5003|CCDS5004|CCDS75490|CCDS78163" Q9Y5W7 "11485546|11736640" MGI:2155664 RGD:1310921 SNX14 616105 418210 +HGNC:14978 SNX15 sorting nexin 15 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 Sorting nexins 754 2001-04-10 2016-10-05 29907 ENSG00000110025 OTTHUMG00000037387 uc058dcd.1 AF175267 NM_013306 "CCDS8089|CCDS8090" Q9NRS6 11208079 MGI:1916274 RGD:1305803 SNX15 605964 +HGNC:14980 SNX16 sorting nexin 16 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 Sorting nexins 754 2003-09-05 2015-08-26 64089 ENSG00000104497 OTTHUMG00000164727 uc011lft.3 AF305779 NM_022133 "CCDS6234|CCDS6235" P57768 "12461558|12813048" MGI:1921968 RGD:620295 SNX16 614903 +HGNC:14979 SNX17 sorting nexin 17 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 KIAA0064 Sorting nexins 754 2001-04-10 2015-02-16 9784 ENSG00000115234 OTTHUMG00000097781 uc002rkg.3 D31764 NM_014748 "CCDS1750|CCDS58704" Q15036 "12169628|15769472" MGI:2387801 RGD:1306424 SNX17 605963 +HGNC:19245 SNX18 sorting nexin 18 protein-coding gene gene with protein product Approved 5q11.2 05q11.2 "SH3PX2|SH3PXD3B" SNAG1 sorting nexin associated golgi protein 1 "Sorting nexins|PX-BAR domain containing" "754|1290" 2002-09-18 2008-03-11 2008-03-11 2014-11-18 112574 ENSG00000178996 OTTHUMG00000096994 uc003jpi.5 AF395536 XR_001741987 "CCDS3962|CCDS43317|CCDS54851" Q96RF0 "16782399|17761170" MGI:2137642 RGD:1310367 SNX18 +HGNC:38442 SNX18P1Y sorting nexin 18 pseudogene 1, Y-linked pseudogene pseudogene Approved Yq11.21 Yq11.21 2011-03-17 2015-03-05 100418999 ENSG00000274162 OTTHUMG00000188067 NG_024792 PGOHUM00000305640 +HGNC:39610 SNX18P2 sorting nexin 18 pseudogene 2 pseudogene pseudogene Approved 9q22.31 09q22.31 2011-03-17 2014-11-19 642952 ENSG00000232843 OTTHUMG00000020235 NG_005963 PGOHUM00000236266 +HGNC:39611 SNX18P3 sorting nexin 18 pseudogene 3 pseudogene pseudogene Approved 9p13.1 09p13.1 2011-03-17 2014-11-19 100418975 ENSG00000225345 OTTHUMG00000019946 NG_023808 PGOHUM00000236039 +HGNC:39612 SNX18P4 sorting nexin 18 pseudogene 4 pseudogene pseudogene Approved 9q21.11 09q21.11 2011-03-17 2016-10-05 100418976 ENSG00000229146 OTTHUMG00000188430 NG_023820 PGOHUM00000303908 +HGNC:39613 SNX18P5 sorting nexin 18 pseudogene 5 pseudogene pseudogene Approved 9p11.1 09p11.1 SNX18P6 sorting nexin 18 pseudogene 6 2011-03-17 2015-03-05 100418977 ENSG00000275144 OTTHUMG00000188574 NG_023822 PGOHUM00000304229 +HGNC:39615 SNX18P7 sorting nexin 18 pseudogene 7 pseudogene pseudogene Approved 9p13.3 09p13.3 2011-03-17 2014-11-19 100418980 ENSG00000234373 OTTHUMG00000000409 NG_023890 PGOHUM00000236435 +HGNC:39616 SNX18P8 sorting nexin 18 pseudogene 8 pseudogene pseudogene Approved 9p11.2 09p11.2 2011-03-17 2016-10-05 100418981 ENSG00000231390 OTTHUMG00000066716 NG_023901 PGOHUM00000236503 +HGNC:39617 SNX18P9 sorting nexin 18 pseudogene 9 pseudogene pseudogene Approved 9q13 09q13 2011-03-17 2016-10-05 644576 ENSG00000224185 OTTHUMG00000034632 NG_006123 PGOHUM00000236614 +HGNC:39618 SNX18P10 sorting nexin 18 pseudogene 10 pseudogene pseudogene Approved 21p11.2 21p11.2 2011-03-17 2015-03-05 100419040 ENSG00000279213 OTTHUMG00000189477 NG_025018 PGOHUM00000297188 +HGNC:39619 SNX18P11 sorting nexin 18 pseudogene 11 pseudogene pseudogene Approved 21p11.2 21p11.2 2011-03-17 2015-03-05 100419043 NG_025050 PGOHUM00000297317 +HGNC:39620 SNX18P12 sorting nexin 18 pseudogene 12 pseudogene pseudogene Approved 21p11.2 21p11.2 2011-03-17 2015-03-05 100419041 ENSG00000279718 OTTHUMG00000189482 NG_025020 PGOHUM00000297194 +HGNC:39621 SNX18P13 sorting nexin 18 pseudogene 13 pseudogene pseudogene Approved 21q11.2 21q11.2 2011-03-17 2014-11-19 100419042 ENSG00000230965 OTTHUMG00000155490 NG_025024 PGOHUM00000239138 +HGNC:39622 SNX18P14 sorting nexin 18 pseudogene 14 pseudogene pseudogene Approved 2q11.1 02q11.1 2011-03-17 2014-11-19 100418972 ENSG00000235571 OTTHUMG00000155128 NG_023589 PGOHUM00000240186 +HGNC:39623 SNX18P15 sorting nexin 18 pseudogene 15 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-03-17 2015-01-30 100419019 NG_026981 PGOHUM00000244173 +HGNC:39624 SNX18P16 sorting nexin 18 pseudogene 16 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-03-17 2015-01-30 100419020 NG_026982 PGOHUM00000244886 +HGNC:39625 SNX18P17 sorting nexin 18 pseudogene 17 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-03-17 2014-11-19 100419024 NG_027137 PGOHUM00000244181 +HGNC:39626 SNX18P18 sorting nexin 18 pseudogene 18 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-03-17 2014-11-19 100419021 NG_026983 PGOHUM00000244182 +HGNC:39627 SNX18P19 sorting nexin 18 pseudogene 19 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-03-17 2014-11-19 100419022 NG_026984 PGOHUM00000244184 +HGNC:39628 SNX18P20 sorting nexin 18 pseudogene 20 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-03-17 2014-11-18 100419026 NG_027139 PGOHUM00000244905 +HGNC:39629 SNX18P21 sorting nexin 18 pseudogene 21 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-03-17 2014-11-19 100419025 NG_027138 PGOHUM00000244898 +HGNC:39630 SNX18P22 sorting nexin 18 pseudogene 22 pseudogene pseudogene Approved 1q21.1 01q21.1 2011-03-17 2014-11-18 100419027 NG_027140 PGOHUM00000244907 +HGNC:39631 SNX18P23 sorting nexin 18 pseudogene 23 pseudogene pseudogene Approved 4p11 04p11 2011-03-17 2014-11-19 100132617 ENSG00000250016 OTTHUMG00000163198 NG_028187 PGOHUM00000245900 +HGNC:39632 SNX18P24 sorting nexin 18 pseudogene 24 pseudogene pseudogene Approved 4p11 04p11 2011-03-17 2014-11-19 100419004 ENSG00000251539 OTTHUMG00000160598 NG_025208 PGOHUM00000245529 +HGNC:39633 SNX18P25 sorting nexin 18 pseudogene 25 pseudogene pseudogene Approved 4p11 04p11 2011-03-17 2014-11-19 100419005 ENSG00000249337 OTTHUMG00000160593 NG_025209 PGOHUM00000245909 +HGNC:39634 SNX18P26 sorting nexin 18 pseudogene 26 pseudogene pseudogene Approved 13q11 13q11 2011-03-17 2014-11-19 100419038 ENSG00000227568 OTTHUMG00000016467 NG_024826 PGOHUM00000248504 +HGNC:39635 SNX18P27 sorting nexin 18 pseudogene 27 pseudogene pseudogene Approved 8p11.1 08p11.1 2011-03-17 2014-11-19 100873788 ENSG00000253418 OTTHUMG00000164115 NG_032330 PGOHUM00000249640 +HGNC:21532 SNX19 sorting nexin 19 protein-coding gene gene with protein product Approved 11q24.3-q25 11q24.3-q25 "KIAA0254|CHET8" Sorting nexins 754 2003-09-04 2016-10-11 399979 ENSG00000120451 OTTHUMG00000165663 uc001qgk.5 D87443 NM_014758 "CCDS31721|CCDS73416" Q92543 MGI:1921581 RGD:1309857 SNX19 +HGNC:16765 SNX19P1 sorting nexin 19 pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 SNX19P sorting nexin 19 pseudogene 2003-10-01 2010-04-20 2010-04-20 2014-11-19 378810 ENSG00000228184 OTTHUMG00000074199 NG_006946 PGOHUM00000258118 +HGNC:38115 SNX19P2 sorting nexin 19 pseudogene 2 pseudogene pseudogene Approved 13q11 13q11 2010-04-20 2014-11-19 400094 ENSG00000235500 OTTHUMG00000016471 NG_006945 PGOHUM00000257953 +HGNC:38116 SNX19P3 sorting nexin 19 pseudogene 3 pseudogene pseudogene Approved 18p11 18p11 2010-04-20 2014-11-18 646442 ENSG00000264570 OTTHUMG00000178704 NG_006944 PGOHUM00000234882 +HGNC:41510 SNX19P4 sorting nexin 19 pseudogene 4 pseudogene pseudogene Approved 10q22.1 10q22.1 2011-05-03 2011-05-03 100419047 NG_025518 PGOHUM00000238835 +HGNC:30390 SNX20 sorting nexin 20 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "SLIC-1|SLIC1" selectin ligand interactor cytoplasmic 1 Sorting nexins 754 2008-03-11 2008-03-25 2014-11-18 124460 ENSG00000167208 OTTHUMG00000133173 uc002egk.3 AK055837 NM_153337 "CCDS10745|CCDS10744|CCDS45481" Q7Z614 "18196517|16782399" MGI:1918857 RGD:1307787 SNX20 613281 +HGNC:16154 SNX21 sorting nexin family member 21 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ337O18.4|SNX-L" C20orf161 chromosome 20 open reading frame 161 "Sorting nexins|Tetratricopeptide repeat domain containing" "754|769" 2001-07-17 2006-07-24 2006-07-24 2015-08-26 90203 ENSG00000124104 OTTHUMG00000032624 uc002xpv.2 AK095851 NM_033421 "CCDS13376|CCDS13377|CCDS42883" Q969T3 "12461558|12459172" MGI:1917729 RGD:2323753 SNX21 +HGNC:16315 SNX22 sorting nexin 22 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 FLJ13952 Sorting nexins 754 2003-09-04 2016-10-05 79856 ENSG00000157734 OTTHUMG00000132965 uc002anc.1 AK024014 NM_024798 CCDS10190 Q96L94 "12461558|17400918" MGI:2685966 RGD:1305042 SNX22 +HGNC:21533 SNX24 sorting nexin 24 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 SBBI31 Sorting nexins 754 2003-09-04 2007-08-15 2014-11-19 28966 ENSG00000064652 OTTHUMG00000128913 uc011cwo.3 AF139461 NM_014035 CCDS4132 Q9Y343 12461558 MGI:1916476 RGD:1306864 SNX24 +HGNC:21883 SNX25 sorting nexin 25 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 SBBI31 Sorting nexins 754 2003-09-05 2014-11-19 83891 ENSG00000109762 OTTHUMG00000160475 uc063bjp.1 AF113223 NM_031953 CCDS34116 Q9H3E2 12461558 MGI:2142610 RGD:1310150 SNX25 +HGNC:41509 SNX25P1 sorting nexin 25 pseudogene 1 pseudogene pseudogene Approved 1q32.3 01q32.3 2011-05-03 2011-05-03 100419028 ENSG00000236809 OTTHUMG00000037000 NG_027204 PGOHUM00000245197 +HGNC:20073 SNX27 sorting nexin family member 27 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "MY014|KIAA0488|MGC20471" "Sorting nexins|PDZ domain containing" "754|1220" 2003-09-05 2014-11-18 81609 ENSG00000143376 OTTHUMG00000013052 uc001eyn.2 AB007957 NM_030918 "CCDS1001|CCDS81377" Q96L92 12461558 MGI:1923992 RGD:628705 SNX27 611541 +HGNC:30542 SNX29 sorting nexin 29 protein-coding gene gene with protein product Approved 16p13.13-p13.12 16p13.13-p13.12 FLJ12363 RUNDC2A RUN domain containing 2A Sorting nexins 754 2008-03-11 2016-10-11 92017 ENSG00000048471 OTTHUMG00000129827 uc002dby.6 AK074072 XM_011522738 CCDS10553 Q8TEQ0 16782399 MGI:1921728 RGD:1596162 SNX29 +HGNC:31913 SNX29P1 sorting nexin 29 pseudogene 1 pseudogene pseudogene Approved 16p12.2 16p12.2 RUNDC2B RUN domain containing 2B 2005-02-08 2011-08-16 2011-08-16 2014-11-19 100652781 ENSG00000158482 OTTHUMG00000170414 BC041583 NR_045011 PGOHUM00000264445 +HGNC:31914 SNX29P2 sorting nexin 29 pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 RUNDC2C RUN domain containing 2C 2005-02-08 2011-08-16 2011-08-16 2015-09-28 440352 ENSG00000271699 OTTHUMG00000184229 BX648280 NR_002939 Q8IUI4 SNX29P2 PGOHUM00000293767 +HGNC:23685 SNX30 sorting nexin family member 30 protein-coding gene gene with protein product Approved 9q32 09q32 ATG24A "Sorting nexins|Autophagy related|PX-BAR domain containing" "754|1022|1290" 2005-10-06 2016-10-05 401548 ENSG00000148158 OTTHUMG00000020512 uc004bgj.5 AK126644 XM_011518691 CCDS43865 Q5VWJ9 MGI:2443882 RGD:1311367 SNX30 +HGNC:28605 SNX31 sorting nexin 31 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 MGC39715 Sorting nexins 754 2008-03-11 2015-08-26 169166 ENSG00000174226 OTTHUMG00000164725 uc003yjr.4 NM_152628 CCDS6288 Q8N9S9 16782399 MGI:1913946 RGD:1309483 SNX31 +HGNC:26423 SNX32 sorting nexin 32 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 FLJ30934 SNX6B sorting nexin 6B "Sorting nexins|PX-BAR domain containing" "754|1290" 2008-02-25 2008-03-11 2008-03-11 2015-09-02 254122 ENSG00000172803 OTTHUMG00000128491 uc001ofr.4 AK055496 NM_152760 CCDS8113 Q86XE0 16782399 MGI:2444704 RGD:1560591 SNX32 +HGNC:28468 SNX33 sorting nexin 33 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 "MGC32065|SH3PXD3C|SNX30" SH3PX3 SH3 and PX domain containing 3 PX-BAR domain containing 1290 2005-07-20 2008-03-25 2008-03-25 2016-10-05 257364 ENSG00000173548 OTTHUMG00000142835 uc002bau.4 AK091291 NM_153271 CCDS10283 Q8WV41 "16374509|16782399|18353773" MGI:2443239 RGD:1307898 SNX33 +HGNC:48590 SNX33P1 sorting nexin 33 pseudogene 1 pseudogene pseudogene Approved 19p13.12 19p13.12 2013-05-21 2015-08-26 100533624 ENSG00000267609 OTTHUMG00000182271 NG_028694 PGOHUM00000294903 +HGNC:11177 SOAT1 sterol O-acyltransferase 1 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 ACAT acyl-Coenzyme A: cholesterol acyltransferase "SOAT|STAT" sterol O-acyltransferase (acyl-Coenzyme A: cholesterol acyltransferase) 1 1998-11-04 2008-08-26 2016-10-05 6646 ENSG00000057252 OTTHUMG00000035253 uc001gml.4 L21934 NM_003101 "CCDS1330|CCDS58047|CCDS58048" P35610 8407899 MGI:104665 RGD:621641 SOAT1 102642 2.3.1.26 +HGNC:11178 SOAT2 sterol O-acyltransferase 2 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 ACAT2 1998-10-29 2015-08-26 8435 ENSG00000167780 OTTHUMG00000169774 uc001sbv.4 AF059203 XR_944775 CCDS8847 O75908 9756920 MGI:1332226 RGD:628865 SOAT2 601311 2.3.1.26 +HGNC:29256 SOBP sine oculis binding protein homolog protein-coding gene gene with protein product Approved 6q21 06q21 FLJ10159 sine oculis binding protein homolog (Drosophila) 2007-03-15 2015-07-02 2015-07-02 55084 ENSG00000112320 OTTHUMG00000015312 uc003prx.4 AK001021 NM_018013 CCDS43488 A7XYQ1 MGI:1924427 RGD:1560479 SOBP 613667 +HGNC:19383 SOCS1 suppressor of cytokine signaling 1 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "SOCS-1|SSI-1|JAB|TIP3|Cish1" "SH2 domain containing|Suppressors of cytokine signaling" "741|764" 2002-11-13 2015-08-26 8651 ENSG00000185338 OTTHUMG00000129792 uc002dar.2 U88326 NM_003745 CCDS10546 O15524 "7796808|9266833" MGI:1354910 RGD:69272 SOCS1 603597 +HGNC:19382 SOCS2 suppressor of cytokine signaling 2 protein-coding gene gene with protein product Approved 12q 12q "STATI2|SSI2|SOCS-2|SSI-2|CIS2|Cish2" STAT-induced STAT inhibitor-2 "SH2 domain containing|Suppressors of cytokine signaling" "741|764" 2002-11-13 2015-09-02 8835 ENSG00000120833 OTTHUMG00000170160 uc001tcw.3 AF037989 XM_017020147 CCDS9047 O14508 "9344848|9266833" MGI:1201787 RGD:69273 SOCS2 605117 +HGNC:27054 SOCS2-AS1 SOCS2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q22 12q22 SOCS2 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2013-10-31 144481 ENSG00000246985 OTTHUMG00000170159 uc001tcu.3 NR_038263 24168098 +HGNC:16069 SOCS2P1 suppressor of cytokine signaling 2 pseudogene 1 pseudogene pseudogene Approved 20q11.21 20q11.21 2002-11-13 2016-10-05 276719 ENSG00000237662 OTTHUMG00000032246 NG_002411 +HGNC:19330 SOCS2P2 suppressor of cytokine signaling 2 pseudogene 2 pseudogene pseudogene Approved 22q11.22 22q11.22 2002-10-03 2016-10-05 266701 ENSG00000224465 OTTHUMG00000150854 NG_002377 PGOHUM00000246268 +HGNC:19391 SOCS3 suppressor of cytokine signaling 3 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "SSI-3|CIS3|SOCS-3|Cish3" "SH2 domain containing|Suppressors of cytokine signaling" "741|764" 2002-11-13 2016-10-12 9021 ENSG00000184557 OTTHUMG00000177513 uc002jvl.4 AB004904 NM_003955 CCDS11756 O14543 "9266833|9344848" MGI:1201791 RGD:621087 LRG_619|http://www.lrg-sequence.org/LRG/LRG_619 SOCS3 604176 +HGNC:19392 SOCS4 suppressor of cytokine signaling 4 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 SOCS7 suppressor of cytokine signaling 7 "SH2 domain containing|Suppressors of cytokine signaling" "741|764" 2002-11-11 2004-02-27 2004-02-25 2016-10-05 122809 ENSG00000180008 OTTHUMG00000140311 uc001xbp.4 AF424815 NM_080867 CCDS9722 Q8WXH5 "12076535|10500304" MGI:1914546 RGD:1306503 SOCS4 616337 +HGNC:16852 SOCS5 suppressor of cytokine signaling 5 protein-coding gene gene with protein product Approved 2p21 02p21 "KIAA0671|SOCS-5|CIS6|CISH6|Cish5" "SH2 domain containing|Suppressors of cytokine signaling" "741|764" 2002-11-13 2014-11-19 9655 ENSG00000171150 OTTHUMG00000128852 uc002rvf.4 AB014571 NM_014011 CCDS1830 O75159 "9734811|11230166" MGI:2385459 RGD:1564914 SOCS5 607094 +HGNC:44597 SOCS5P1 suppressor of cytokine signaling 5 pseudogene 1 pseudogene pseudogene Approved 7q21.11 07q21.11 2012-11-19 2012-11-19 100420754 ENSG00000236610 OTTHUMG00000154618 NG_026489 PGOHUM00000232908 +HGNC:44598 SOCS5P2 suppressor of cytokine signaling 5 pseudogene 2 pseudogene pseudogene Approved 9q34.3 09q34.3 2012-11-19 2012-11-19 100128299 ENSG00000224682 OTTHUMG00000020907 NG_021679 PGOHUM00000236788 +HGNC:44599 SOCS5P3 suppressor of cytokine signaling 5 pseudogene 3 pseudogene pseudogene Approved 3p21.31 03p21.31 2012-11-19 2012-11-19 100127945 ENSG00000235805 OTTHUMG00000156450 NG_022203 PGOHUM00000237608 +HGNC:44600 SOCS5P4 suppressor of cytokine signaling 5 pseudogene 4 pseudogene pseudogene Approved Xq13.1 Xq13.1 2012-11-19 2012-11-19 100132415 ENSG00000227536 OTTHUMG00000021784 NG_028788 PGOHUM00000241378 +HGNC:44601 SOCS5P5 suppressor of cytokine signaling 5 pseudogene 5 pseudogene pseudogene Approved 6q21 06q21 2012-11-19 2012-11-19 643884 ENSG00000216904 OTTHUMG00000015396 NG_022369 PGOHUM00000243746 +HGNC:16833 SOCS6 suppressor of cytokine signaling 6 protein-coding gene gene with protein product Approved 18q22.2 18q22.2 "CIS4|SSI4|HSPC060|STATI4|STAI4|Cish4" SOCS4 suppressor of cytokine signaling 4 "SH2 domain containing|Suppressors of cytokine signaling" "741|764" 2002-11-13 2004-02-27 2004-02-25 2016-10-05 9306 ENSG00000170677 OTTHUMG00000132816 uc002lkr.2 AB006968 XM_005266783 CCDS11998 O14544 "9344848|11042152" MGI:1924885 RGD:1304632 SOCS6 605118 +HGNC:29846 SOCS7 suppressor of cytokine signaling 7 protein-coding gene gene with protein product Approved 17q12 17q12 "NAP4|NCKAP4" "Nck, Ash and phospholipase C binding protein|NCK-associated protein 4" "SH2 domain containing|Suppressors of cytokine signaling" "741|764" 2004-02-25 2014-08-12 30837 ENSG00000274211 OTTHUMG00000188546 uc002hqa.4 AB005216 XM_371052 CCDS32637 O14512 "9344857|12076535" MGI:2651588 RGD:1307720 SOCS7 608788 +HGNC:11179 SOD1 superoxide dismutase 1, soluble protein-coding gene gene with protein product Approved 21q22.11 21q22.11 IPOA "ALS|ALS1" amyotrophic lateral sclerosis 1 (adult) 1986-01-01 2008-07-31 2016-10-12 6647 ENSG00000142168 OTTHUMG00000084878 uc002ypa.4 "AY049787|X02317" NM_000454 CCDS33536 P00441 8446170 MGI:98351 RGD:3731 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_652|http://www.lrg-sequence.org/LRG/LRG_652" SOD1 147450 119776 1.15.1.1 +HGNC:45134 SOD1P1 superoxide dismutase 1, soluble pseudogene 1 pseudogene pseudogene Approved 6p12.1 06p12.1 2013-02-22 2013-02-22 106479055 ENSG00000219074 OTTHUMG00000014872 NG_044539 PGOHUM00000243200 +HGNC:45135 SOD1P2 superoxide dismutase 1, soluble pseudogene 2 pseudogene pseudogene Approved 16q12.1 16q12.1 2013-02-22 2013-02-22 100652974 ENSG00000261282 OTTHUMG00000173288 NG_032733 PGOHUM00000249130 +HGNC:45136 SOD1P3 superoxide dismutase 1, soluble pseudogene 3 pseudogene pseudogene Approved 8q24.13 08q24.13 2013-02-22 2013-02-22 101060005 ENSG00000253651 OTTHUMG00000165026 PGOHUM00000249501 +HGNC:11180 SOD2 superoxide dismutase 2, mitochondrial protein-coding gene gene with protein product Approved 6q25.3 06q25.3 1986-01-01 2016-10-05 6648 ENSG00000112096 OTTHUMG00000015940 uc003qsf.6 M36693 NM_000636 "CCDS5265|CCDS34564|CCDS83141|CCDS83142|CCDS83143" P04179 MGI:98352 RGD:3732 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ SOD2 147460 1.15.1.1 +HGNC:45268 SOD2P1 superoxide dismutase 2, mitochondrial pseudogene 1 pseudogene pseudogene Approved 1p21.1 01p21.1 2013-03-15 2013-03-15 100421046 ENSG00000234257 OTTHUMG00000010923 NG_026965 PGOHUM00000244124 +HGNC:11181 SOD3 superoxide dismutase 3, extracellular protein-coding gene gene with protein product Approved 4p15.2 04p15.2 EC-SOD 1988-05-08 2016-02-26 2016-02-26 6649 ENSG00000109610 OTTHUMG00000128565 uc003gqz.4 NM_003102 CCDS3430 P08294 MGI:103181 RGD:3733 SOD3 185490 1.15.1.1 +HGNC:16111 SOGA1 suppressor of glucose, autophagy associated 1 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "dJ132F21.1|FLJ44670|SOGA" "suppressor of glucose by autophagy|suppressor of glucose from autophagy" "C20orf117|KIAA0889" "chromosome 20 open reading frame 117|KIAA0889" 2001-07-17 2012-02-27 2012-02-27 2014-11-19 140710 ENSG00000149639 OTTHUMG00000032395 uc002xgd.2 AK126630 NM_199181 "CCDS46598|CCDS54459" O94964 20813965 MGI:2444575 RGD:1563627 SOGA1 +HGNC:21494 SOGA3 SOGA family member 3 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 dJ403A15.3 C6orf174 chromosome 6 open reading frame 174 2003-11-26 2012-02-27 2012-02-27 2015-08-03 387104 ENSG00000214338 OTTHUMG00000166438 uc063rfs.1 AK096490 NM_001012279 CCDS43505 Q5TF21 MGI:1914662 +HGNC:27845 SOHLH1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "NOHLH|TEB2|bA100C15.3|bHLHe80|SPATA27" spermatogenesis associated 27 C9orf157 chromosome 9 open reading frame 157 Basic helix-loop-helix proteins 420 2004-05-27 2006-03-16 2006-03-16 2014-11-19 402381 ENSG00000165643 OTTHUMG00000020915 uc004cgl.4 BC031861 NM_001012415 "CCDS35174|CCDS48054" Q5JUK2 12477932 MGI:2684956 RGD:1564440 SOHLH1 610224 304764 +HGNC:26026 SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "FLJ20449|TEB1|bHLHe81|SPATA28" spermatogenesis associated 28 Basic helix-loop-helix proteins 420 2006-03-16 2014-11-18 54937 ENSG00000120669 OTTHUMG00000016728 uc001uvj.3 AK000456 NM_017826 "CCDS9355|CCDS61309" Q9NX45 12477932 MGI:1921684 RGD:1589577 SOHLH2 616066 +HGNC:11183 SON SON DNA binding protein protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "DBP-5|NREBP|KIAA1019|BASS1|FLJ21099|FLJ33914" "NRE-binding protein|negative regulatory element-binding protein|Bax antagonist selected in Saccharomyces 1" C21orf50 "G-patch domain containing|Minor histocompatibility antigens" "579|870" 1994-08-05 2016-10-05 6651 ENSG00000159140 OTTHUMG00000065806 uc061zrh.1 AF380181 NM_138927 "CCDS13629|CCDS13631|CCDS74784|CCDS77624" P18583 "8318737|21551269" MGI:98353 RGD:1309013 SON 182465 +HGNC:30608 SONP1 SON pseudogene 1 pseudogene pseudogene Approved 1q23.1 01q23.1 2006-09-21 2006-09-21 148300 X63754 NG_001549 8503959 +HGNC:14565 SORBS1 sorbin and SH3 domain containing 1 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "FLJ12406|CAP|sh3p12|ponsin|KIAA1296" c-Cbl-associated protein SH3D5 SH3-domain protein 5 (ponsin) 2001-03-05 2002-05-08 2016-10-05 10580 ENSG00000095637 OTTHUMG00000018812 uc001kkv.4 AF136381 XM_017015500 "CCDS7442|CCDS31252|CCDS31253|CCDS31254|CCDS31255|CCDS31256|CCDS73169|CCDS76326|CCDS76327" Q9BX66 "10085297|11001060" MGI:700014 RGD:1586598 SORBS1 605264 +HGNC:24098 SORBS2 sorbin and SH3 domain containing 2 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "ARGBP2|KIAA0777" Arg/Abl interacting protein 2005-09-28 2014-11-19 8470 ENSG00000154556 OTTHUMG00000157215 uc003iyi.5 NM_003603 "CCDS3845|CCDS43289|CCDS47173|CCDS47174|CCDS47175|CCDS47176|CCDS54825|CCDS59482" O94875 "9211900|9872452" MGI:1924574 RGD:620061 SORBS2 616349 +HGNC:30907 SORBS3 sorbin and SH3 domain containing 3 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "SCAM-1|SH3D4|vinexin" 2005-09-28 2014-11-19 10174 ENSG00000120896 OTTHUMG00000131728 uc003xbv.4 NM_005775 "CCDS6031|CCDS47824" O60504 "9885244|12510380" MGI:700013 RGD:628900 SORBS3 610795 +HGNC:16697 SORCS1 sortilin related VPS10 domain containing receptor 1 protein-coding gene gene with protein product Approved 10q25.1 10q25.1 sorCS1 sortilin-related VPS10 domain containing receptor 1 2004-04-20 2016-02-01 2016-10-05 114815 ENSG00000108018 OTTHUMG00000019018 uc001kym.4 AF284756 NM_052918 CCDS7559 Q8WY21 11499680 MGI:1929666 RGD:1305910 SORCS1 606283 +HGNC:16698 SORCS2 sortilin related VPS10 domain containing receptor 2 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 KIAA1329 sortilin-related VPS10 domain containing receptor 2 2004-04-20 2016-02-01 2016-02-01 57537 ENSG00000184985 OTTHUMG00000159981 uc003gkb.5 AB037750 NM_020777 CCDS47008 Q96PQ0 11499680 MGI:1932289 RGD:1310621 SORCS2 606284 +HGNC:16699 SORCS3 sortilin related VPS10 domain containing receptor 3 protein-coding gene gene with protein product Approved 10q25.1 10q25.1 "KIAA1059|SORCS" sortilin-related VPS10 domain containing receptor 3 2004-04-20 2016-02-01 2016-10-05 22986 ENSG00000156395 OTTHUMG00000019011 uc001kyi.1 AB028982 NM_014978 CCDS7558 Q9UPU3 11499680 MGI:1913923 RGD:1310974 SORCS3 606285 +HGNC:45244 SORCS3-AS1 SORCS3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q25.1 10q25.1 2013-03-11 2013-03-11 100505890 ENSG00000226387 OTTHUMG00000019010 uc001kyj.5 BC042079 NR_104028 +HGNC:11184 SORD sorbitol dehydrogenase protein-coding gene gene with protein product Approved 15q21.1 15q21.1 2001-06-22 2016-10-05 6652 ENSG00000140263 OTTHUMG00000131265 uc001zul.5 NM_003104 CCDS10116 Q00796 7782086 MGI:98266 RGD:3734 SORD 182500 1.1.1.14 +HGNC:49919 SORD2P sorbitol dehydrogenase 2, pseudogene pseudogene pseudogene Approved 15q21.1 15q21.1 2014-03-21 2014-03-21 653381 ENSG00000259479 OTTHUMG00000171966 NG_008173 9880675 PGOHUM00000246773 +HGNC:11185 SORL1 sortilin related receptor 1 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 "gp250|LR11|LRP9|SorLA|SorLA-1" LDLR relative with 11 ligand-binding repeats C11orf32 "chromosome 11 open reading frame 32|sortilin-related receptor, L(DLR class) A repeats-containing" Fibronectin type III domain containing 555 1996-12-27 2016-06-21 2016-10-05 6653 ENSG00000137642 OTTHUMG00000166057 uc001pxx.4 Y08110 NM_003105 CCDS8436 Q92673 "9157966|8940146" MGI:1202296 RGD:619914 SORL1 602005 306073 +HGNC:11186 SORT1 sortilin 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "Gp95|NT3" 1996-05-14 2015-08-26 6272 ENSG00000134243 OTTHUMG00000011999 uc001dxm.3 BC023542 NM_002959 "CCDS798|CCDS55618" Q99523 MGI:1338015 RGD:619999 SORT1 602458 +HGNC:11187 SOS1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 "HGF|GF1" GINGF "gingival fibromatosis, hereditary, 1|son of sevenless homolog 1 (Drosophila)" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 1993-10-27 2015-11-10 2016-10-12 6654 ENSG00000115904 OTTHUMG00000102109 uc061ikm.1 L13857 NM_005633 CCDS1802 Q07889 "8276400|10995566" MGI:98354 RGD:1310949 LRG_754|http://www.lrg-sequence.org/LRG/LRG_754 SOS1 182530 119781 +HGNC:41385 SOS1-IT1 SOS1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2p22.1 02p22.1 SOS1 intronic transcript 1 (non-protein coding) 2011-05-20 2015-02-25 2015-02-25 100505911 ENSG00000229692 OTTHUMG00000153569 uc061ikr.1 +HGNC:11188 SOS2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding gene gene with protein product Approved 14q21.3 14q21.3 "son of sevenless (Drosophilia) homolog 2|son of sevenless homolog 2 (Drosophila)" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 1993-10-27 2015-11-10 2016-10-05 6655 ENSG00000100485 OTTHUMG00000140292 uc001wxs.5 L13858 NM_006939 CCDS9697 Q07890 8276400 MGI:98355 RGD:620435 SOS2 601247 434401 +HGNC:13771 SOST sclerostin protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "VBCH|DAND6" sclerosteosis DAN family 1246 2002-02-20 2010-04-28 2016-04-27 50964 ENSG00000167941 OTTHUMG00000180888 uc002iec.1 AF326736 NM_025237 CCDS11468 Q9BQB4 "11179006|11181578" MGI:1921749 RGD:69358 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=SOST SOST 605740 123431 +HGNC:21748 SOSTDC1 sclerostin domain containing 1 protein-coding gene gene with protein product Approved 7p21.2 07p21.2 "DKFZp564D206|USAG1|DAND7" ectodin DAN family 1246 2003-07-22 2016-04-27 25928 ENSG00000171243 OTTHUMG00000090807 uc003stg.4 AB059270 NM_015464 CCDS5360 Q6X4U4 MGI:1913292 RGD:628877 SOSTDC1 609675 +HGNC:27033 SOWAHA sosondowah ankyrin repeat domain family member A protein-coding gene gene with protein product Approved 5q31.1 05q31.1 ANKRD43 ankyrin repeat domain 43 Ankyrin repeat domain containing 403 2005-05-29 2012-01-12 2012-01-12 2016-10-05 134548 ENSG00000198944 OTTHUMG00000059844 uc003kxw.4 AK090823 NM_175873 CCDS43361 Q2M3V2 22234889 MGI:2687280 RGD:1564616 +HGNC:32958 SOWAHB sosondowah ankyrin repeat domain family member B protein-coding gene gene with protein product Approved 4q21.1 04q21.1 ANKRD56 ankyrin repeat domain 56 Ankyrin repeat domain containing 403 2006-07-12 2012-01-12 2012-01-12 2014-11-19 345079 ENSG00000186212 OTTHUMG00000160876 uc003hki.4 NM_001029870 CCDS34017 A6NEL2 22234889 MGI:1925338 RGD:1311994 +HGNC:26149 SOWAHC sosondowah ankyrin repeat domain family member C protein-coding gene gene with protein product Approved 2q13 02q13 FLJ21870 "C2orf26|ANKRD57" ankyrin repeat domain 57 Ankyrin repeat domain containing 403 2004-05-10 2012-01-12 2012-01-12 2014-11-19 65124 ENSG00000198142 OTTHUMG00000153219 uc002tfb.4 AK023346 NM_023016 CCDS33270 Q53LP3 22234889 MGI:3606051 RGD:1595666 +HGNC:32960 SOWAHD sosondowah ankyrin repeat domain family member D protein-coding gene gene with protein product Approved Xq24 Xq24 ANKRD58 ankyrin repeat domain 58 Ankyrin repeat domain containing 403 2006-07-12 2012-01-12 2012-01-12 2014-11-19 347454 ENSG00000187808 OTTHUMG00000159606 uc010nql.4 NM_001105576 CCDS43984 A6NJG2 22234889 MGI:3045274 RGD:1563086 +HGNC:11189 SOX1 SRY-box 1 protein-coding gene gene with protein product Approved 13q34 13q34 SRY-related HMG-box gene 1 "SRY (sex determining region Y)-box 1|SRY box 1" SRY-boxes 757 1993-11-30 2015-11-23 2015-11-23 6656 ENSG00000182968 OTTHUMG00000017362 uc001vsb.2 NM_005986 CCDS9523 O00570 9337405 MGI:98357 RGD:6487636 SOX1 602148 +HGNC:11195 SOX2 SRY-box 2 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "SRY (sex determining region Y)-box 2|SRY box 2" SRY-boxes 757 1993-11-30 2015-11-23 2016-10-12 6657 ENSG00000181449 OTTHUMG00000158222 uc003fkx.4 BC013923 NM_003106 CCDS3239 P48431 7849401 MGI:98364 RGD:1565646 "LOVD|http://lsdb.hgu.mrc.ac.uk/home.php?select_db=SOX2|LRG_719|http://www.lrg-sequence.org/LRG/LRG_719" SOX2 184429 119790 +HGNC:20209 SOX2-OT SOX2 overlapping transcript non-coding RNA RNA, long non-coding Approved 3q26.33 03q26.33 "DKFZp761J1324|NCRNA00043" non-protein coding RNA 43 SOX2OT SOX2 overlapping transcript (non-protein coding) Long non-coding RNAs 788 2003-07-01 2011-08-19 2014-06-02 2014-10-22 347689 ENSG00000242808 OTTHUMG00000158186 uc062qin.1 "AL157425|AK022826" NR_004053 "12612584|19767420" 616338 sox2ot +HGNC:11199 SOX3 SRY-box 3 protein-coding gene gene with protein product Approved Xq27.1 Xq27.1 PHP "panhypopituitarism|SRY (sex determining region Y)-box 3|SRY box 3" SRY-boxes 757 1993-11-30 2015-11-23 2015-11-23 6658 ENSG00000134595 OTTHUMG00000022544 uc004fbd.2 NM_005634 CCDS14669 P41225 15800844 MGI:98365 RGD:1591839 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SOX3 SOX3 313430 138386 +HGNC:11200 SOX4 SRY-box 4 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 "SRY (sex determining region Y)-box 4|SRY box 4" SRY-boxes 757 1993-11-30 2015-11-23 2015-11-23 6659 ENSG00000124766 OTTHUMG00000016101 uc003ndi.4 AF070669 NM_003107 CCDS4547 Q06945 "8268656|9730625" MGI:98366 RGD:1309488 SOX4 184430 +HGNC:11201 SOX5 SRY-box 5 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "L-SOX5|MGC35153" "SRY (sex determining region Y)-box 5|SRY box 5" SRY-boxes 757 1997-07-07 2015-11-23 2015-11-23 6660 ENSG00000134532 OTTHUMG00000169026 uc058lyf.1 AB081589 NM_006940 "CCDS8699|CCDS41761|CCDS44844|CCDS58216|CCDS58217|CCDS81672" P35711 8812465 MGI:98367 RGD:620471 SOX5 604975 317704 +HGNC:11202 SOX5P1 SRY-box 5 pseudogene 1 pseudogene pseudogene Approved 8q21.3 08q21.3 SOX29 SOX5P "SRY (sex determining region Y)-box 5 pseudogene|SRY box 5 pseudogene 1" 1997-07-07 2015-11-06 2015-11-23 2015-11-23 6661 ENSG00000254376 OTTHUMG00000163766 AF032454 NG_002726 "8812465|12194848" PGOHUM00000303297 +HGNC:16421 SOX6 SRY-box 6 protein-coding gene gene with protein product Approved 11p15.3 11p15.3 "SRY (sex determining region Y)-box 6|SRY box 6" SRY-boxes 757 2002-02-15 2015-11-23 2015-11-23 55553 ENSG00000110693 OTTHUMG00000165876 uc001mmg.3 AF309034 NM_033326 "CCDS7821|CCDS53604|CCDS53605" P35712 11255018 MGI:98368 RGD:1309000 SOX6 607257 +HGNC:18196 SOX7 SRY-box 7 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "SRY (sex determining region Y)-box 7|SRY box 7" SRY-boxes 757 2002-02-15 2015-11-23 2016-10-05 83595 ENSG00000171056 OTTHUMG00000090585 uc003wtf.5 AJ409320 NM_031439 CCDS5977 Q9BT81 11691915 MGI:98369 RGD:1310038 SOX7 612202 +HGNC:11203 SOX8 SRY-box 8 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "SRY (sex determining region Y)-box 8|SRY box 8" SRY-boxes 757 2000-03-14 2015-11-23 2015-11-23 30812 ENSG00000005513 OTTHUMG00000122101 uc002ckn.3 AF164104 NM_014587 CCDS10428 P57073 "10662550|10684944" MGI:98370 RGD:1309072 SOX8 605923 +HGNC:11204 SOX9 SRY-box 9 protein-coding gene gene with protein product Approved 17q24.3 17q24.3 SRA1 "CMD1|CMPD1" "campomelic dysplasia, autosomal sex-reversal|SRY (sex determining region Y)-box 9|SRY box 9" SRY-boxes 757 1992-09-25 2015-11-23 2015-11-23 6662 ENSG00000125398 OTTHUMG00000166300 uc002jiw.4 S74506 NM_000346 CCDS11689 P48436 8348155 MGI:98371 RGD:620474 SOX9 608160 119792 +HGNC:49321 SOX9-AS1 SOX9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q24.3 17q24.3 FLJ37644 2013-10-17 2013-10-17 400618 ENSG00000234899 OTTHUMG00000132234 NR_103737 +HGNC:11190 SOX10 SRY-box 10 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "DOM|WS4|WS2E" dominant megacolon, mouse, human homolog of "SRY (sex determining region Y)-box 10|SRY box 10" SRY-boxes 757 1998-01-22 2015-11-23 2016-10-12 6663 ENSG00000100146 OTTHUMG00000149913 uc003auo.2 NM_006941 CCDS13964 P56693 "9462749|10441344|12944398" MGI:98358 RGD:3735 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LOVD - Leiden Open Variation Database|http://grenada.lumc.nl/LOVD2/WS/home.php?select_db=SOX10|LRG_271|http://www.lrg-sequence.org/LRG/LRG_271" SOX10 602229 119786 +HGNC:11191 SOX11 SRY-box 11 protein-coding gene gene with protein product Approved 2p25.2 02p25.2 SRY-related HMG-box gene 11 "SRY (sex determining region Y)-box 11|SRY box 11" SRY-boxes 757 1995-06-08 2015-11-23 2016-10-05 6664 ENSG00000176887 OTTHUMG00000090333 uc002qyj.3 NM_003108 CCDS1654 P35716 "8666406|12637543" MGI:98359 RGD:69351 SOX11 600898 406000 +HGNC:11198 SOX12 SRY-box 12 protein-coding gene gene with protein product Approved 20p13 20p13 SOX22 "SRY (sex determining region Y)-box 22|SRY (sex determining region Y)-box 12|SRY box 12" SRY-boxes 757 1997-07-07 2002-07-26 2015-11-23 2015-11-23 6666 ENSG00000177732 OTTHUMG00000031623 uc002wdh.5 U35612 NM_006943 CCDS12995 O15370 9215677 MGI:98360 RGD:1586313 SOX12 601947 +HGNC:11192 SOX13 SRY-box 13 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "Sox-13|ICA12|MGC117216" "islet cell antibody 12|SRY-related HMG-box gene 13|type 1 diabetes autoantigen|SRY-box 13" "SRY (sex determining region Y)-box 13|SRY box 13" SRY-boxes 757 1998-12-11 2015-11-23 2016-10-05 9580 ENSG00000143842 OTTHUMG00000036050 uc001ham.4 NM_005686 CCDS44299 Q9UN79 10198172 MGI:98361 RGD:1309674 SOX13 604748 +HGNC:11193 SOX14 SRY-box 14 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 SOX28 "HMG box transcription factor SOX-14|SRY-box 14" "SRY (sex determining region Y)-box 14|SRY box 14" SRY-boxes 757 1998-09-17 2015-11-23 2016-10-05 8403 ENSG00000168875 OTTHUMG00000159757 uc003erm.3 AJ006230 NM_004189 CCDS3094 O95416 9925951 MGI:98362 RGD:1309654 SOX14 604747 +HGNC:11196 SOX15 SRY-box 15 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "SOX27|SOX26" SOX20 "SRY (sex determining region Y)-box 20|SRY (sex determining region Y)-box 15|SRY box 15" SRY-boxes 757 1995-09-15 2002-07-26 2015-11-23 2015-11-23 6665 ENSG00000129194 OTTHUMG00000178146 uc002ghz.2 AJ006222 NM_006942 CCDS32549 O60248 "8978787|9730625" MGI:98363 RGD:1312022 SOX15 601297 +HGNC:18122 SOX17 SRY-box 17 protein-coding gene gene with protein product Approved 8q11.23 08q11.23 "SRY (sex determining region Y)-box 17|SRY box 17" SRY-boxes 757 2002-02-15 2015-11-23 2015-11-23 64321 ENSG00000164736 OTTHUMG00000164377 uc003xsb.5 AB073988 NM_022454 CCDS6159 Q9H6I2 11786926 MGI:107543 RGD:1305371 SOX17 610928 289375 +HGNC:11194 SOX18 SRY-box 18 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "SRY (sex determining region Y)-box 18|SRY box 18" SRY-boxes 757 2000-07-31 2015-11-23 2015-11-23 54345 ENSG00000203883 OTTHUMG00000033017 uc002yhs.4 AB033888 NM_018419 CCDS13552 P35713 10807548 MGI:103559 RGD:1311718 SOX18 601618 119788 +HGNC:11197 SOX21 SRY-box 21 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 SOX25 "SRY (sex determining region Y)-box 21|SRY box 21" SRY-boxes 757 1999-12-14 2015-11-23 2015-11-23 11166 ENSG00000125285 OTTHUMG00000017209 uc001vma.4 AF107044 NM_007084 CCDS9473 Q9Y651 10441749 MGI:2654070 RGD:1304724 SOX21 604974 +HGNC:39807 SOX21-AS1 SOX21 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 13q32.1 13q32.1 "SOX21 antisense RNA 1 (non-protein coding)|SOX21 antisense RNA 1" 2011-03-29 2012-10-15 2015-05-22 100507533 ENSG00000227640 OTTHUMG00000017213 uc001vmb.3 NR_046514 25959816 +HGNC:30635 SOX30 SRY-box 30 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "SRY (sex determining region Y)-box 30|SRY box 30" SRY-boxes 757 2004-07-28 2015-11-23 2016-10-05 11063 ENSG00000039600 OTTHUMG00000130247 uc003lxb.1 AB022083 NM_007017 "CCDS4339|CCDS4340|CCDS78080" O94993 "15019997|11678506" MGI:1341157 RGD:1586382 SOX30 606698 +HGNC:35122 SOX30P1 SRY-box 30 pseudogene 1 pseudogene pseudogene Approved 5q33.3 05q33.3 "SRY (sex determining region Y)-box 30 pseudogene 1|SRY box 30 pseudogene 1" 2010-10-21 2015-11-23 2015-11-23 442142 NG_028192 PGOHUM00000235436 +HGNC:11205 SP1 Sp1 transcription factor protein-coding gene gene with protein product Approved 12q13.1 12q13.1 specificity protein 1 "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 1991-06-04 2014-11-19 6667 ENSG00000185591 OTTHUMG00000170047 uc001scw.4 J03133 XM_011538696 "CCDS8857|CCDS44898" P08047 1662663 MGI:98372 RGD:3738 SP1 189906 +HGNC:11207 SP2 Sp2 transcription factor protein-coding gene gene with protein product Approved 17q21.32 17q21.32 KIAA0048 "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 1993-02-10 2016-10-05 6668 ENSG00000167182 OTTHUMG00000150196 uc002imk.3 NM_003110 CCDS11521 Q02086 "1341900|9730617" MGI:1926162 RGD:1592078 SP2 601801 +HGNC:51341 SP2-AS1 SP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.32 17q21.32 2014-10-10 2014-10-10 100506325 ENSG00000234494 OTTHUMG00000132519 "BC038442|BF673352|DA457977" NR_103856 +HGNC:11208 SP3 Sp3 transcription factor protein-coding gene gene with protein product Approved 2q31.1 02q31.1 SPR-2 "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 1993-02-10 2016-10-05 6670 ENSG00000172845 OTTHUMG00000132333 uc002uig.3 M97191 NM_003111 "CCDS2254|CCDS46452" Q02447 "1341900|1454515" MGI:1277166 RGD:1583765 SP3 601804 +HGNC:35430 SP3P Sp3 transcription factor pseudogene pseudogene pseudogene Approved 13q31.2 13q31.2 2008-12-19 2016-10-05 160824 ENSG00000225530 OTTHUMG00000017176 BC036697 NG_004748 15474306 PGOHUM00000248458 +HGNC:11209 SP4 Sp4 transcription factor protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "SPR-1|HF1B|MGC130008|MGC130009" "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 1993-09-28 2016-10-05 6671 ENSG00000105866 OTTHUMG00000094801 uc003sva.4 NM_003112 CCDS5373 Q02446 1454515 MGI:107595 RGD:3741 SP4 600540 +HGNC:14529 SP5 Sp5 transcription factor protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 2004-06-09 2016-10-05 389058 ENSG00000204335 OTTHUMG00000154053 uc002uge.4 XM_371581 CCDS33322 Q6BEB4 MGI:1927715 RGD:1308499 SP5 609391 +HGNC:14530 SP6 Sp6 transcription factor protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "KLF14|Epfn" epiprofin "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 2001-02-06 2014-11-19 80320 ENSG00000189120 OTTHUMG00000132067 uc002imh.2 NM_199262 CCDS11520 Q3SY56 "11087666|14551215" MGI:1932575 RGD:1306768 SP6 608613 +HGNC:17321 SP7 Sp7 transcription factor protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "osterix|OSX" "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 2002-09-23 2015-03-03 121340 ENSG00000170374 OTTHUMG00000170031 uc001scv.4 AF477981 XM_011537900 "CCDS44897|CCDS73475" Q8TDD2 11792318 MGI:2153568 RGD:631377 SP7 variant database|https://oi.gene.le.ac.uk/home.php?select_db=SP7 SP7 606633 236638 +HGNC:19196 SP8 Sp8 transcription factor protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 2002-09-23 2016-10-05 221833 ENSG00000164651 OTTHUMG00000094788 uc022aak.3 NM_182700 "CCDS5372|CCDS43555" Q8IXZ3 MGI:2443471 RGD:1307619 SP8 608306 +HGNC:30690 SP9 Sp9 transcription factor protein-coding gene gene with protein product Approved 2q31.1 02q31.1 ZNF990 zinc finger protein 990 Sp9 transcription factor homolog (mouse) "Zinc fingers C2H2-type|Sp transcription factors" "28|755" 2008-12-09 2012-12-07 2015-08-26 100131390 ENSG00000217236 OTTHUMG00000150371 uc010zem.2 NM_001145250 CCDS46453 P0CG40 MGI:3574660 RGD:1559457 SP9 1235 +HGNC:11206 SP100 SP100 nuclear antigen protein-coding gene gene with protein product Approved 2q37.1 02q37.1 nuclear antigen Sp100 PHD finger proteins 88 1994-11-25 2005-11-30 2015-09-02 6672 ENSG00000067066 OTTHUMG00000133203 uc002vqu.2 AF056322 NM_003113 "CCDS2477|CCDS42832|CCDS56170|CCDS56171|CCDS56172|CCDS56173" P23497 "2258622|8695863" MGI:109561 RGD:1359550 SP100 604585 objectId:2777 +HGNC:5401 SP110 SP110 nuclear body protein protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "IFI41|IFI75" interferon-induced protein 41, 30kD "PHD finger proteins|Minor histocompatibility antigens" "88|870" 1996-12-19 2001-12-20 2001-12-19 2016-10-12 3431 ENSG00000135899 OTTHUMG00000133204 uc002vqg.5 L22343 NM_080424 "CCDS2474|CCDS2475|CCDS2476|CCDS54435" Q9HB58 "7693701|10388521" MGI:1923364 RGD:1310173 "SP110base: Mutation registry for Hepatic veno-occlusive disease with immunodeficiency syndrome (VODI)|http://structure.bmc.lu.se/idbase/SP110base/|LRG_109|http://www.lrg-sequence.org/LRG/LRG_109" SP110 604457 119797 objectId:2778 +HGNC:17133 SP140 SP140 nuclear body protein protein-coding gene gene with protein product Approved 2q37.1 02q37.1 "LYSP100-B|LYSP100-A" PHD finger proteins 88 2001-11-07 2015-09-02 11262 ENSG00000079263 OTTHUMG00000153670 uc002vql.4 U63420 NM_007237 "CCDS33392|CCDS42831|CCDS63149|CCDS63150|CCDS63151" Q13342 "8695863|8910577|12368356" MGI:3702467 RGD:1306355 SP140 608602 objectId:2779 +HGNC:25105 SP140L SP140 nuclear body protein like protein-coding gene gene with protein product Approved 2q37.1 02q37.1 SP140 nuclear body protein-like PHD finger proteins 88 2008-08-15 2015-11-19 2015-11-19 93349 ENSG00000185404 OTTHUMG00000153730 uc010fxm.2 BC004921 NM_138402 "CCDS46538|CCDS77536|CCDS77537" Q9H930 12477932 MGI:3702467 SP140L objectId:2780 +HGNC:11210 SPA17 sperm autoantigenic protein 17 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "SP17|CT22" cancer/testis antigen 22 2000-05-02 2015-08-26 53340 ENSG00000064199 OTTHUMG00000165927 uc058ird.1 AF334735 NM_017425 CCDS8450 Q15506 8688458 MGI:1333778 RGD:620154 SPA17 608621 +HGNC:23224 SPA17P1 sperm autoantigenic protein 17 pseudogene 1 pseudogene pseudogene Approved 10q22.2 10q22.2 Sp17-2 2003-10-20 2016-10-05 171424 ENSG00000236797 OTTHUMG00000018525 AF335424 NG_001328 12393185 PGOHUM00000238544 +HGNC:14967 SPACA1 sperm acrosome associated 1 protein-coding gene gene with protein product Approved 6q15 06q15 SAMP32 2001-04-05 2015-08-26 81833 ENSG00000118434 OTTHUMG00000015183 uc003pmn.3 AF203447 XR_241854 CCDS5014 Q9HBV2 MGI:1914902 RGD:1560284 SPACA1 612739 +HGNC:16260 SPACA3 sperm acrosome associated 3 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "ALLP17|SLLP1|LYC3|LYZL3|CT54" "cancer/testis antigen 54|sperm lyzozyme-like acrosomal protein 1" Lysozymes, c-type 1174 2001-07-20 2016-10-05 124912 ENSG00000141316 OTTHUMG00000132886 uc002hhs.2 "AF216311|AF099029" NM_173847 "CCDS11275|CCDS82105" Q8IXA5 12606493 MGI:1922872 RGD:1306684 SPACA3 612749 +HGNC:16441 SPACA4 sperm acrosome associated 4 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 SAMP14 LY6/PLAUR domain containing 1226 2001-08-28 2015-08-26 171169 ENSG00000177202 OTTHUMG00000183316 uc002pjo.3 NM_133498 CCDS12725 Q8TDM5 MGI:1916613 RGD:1587464 SPACA4 609932 +HGNC:31353 SPACA5 sperm acrosome associated 5 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "SLLP2|LYZL5|LYC5|UNQ6288|dJ54B20.3|PNPK6288" Sperm Lysozyme-Like Protein 2 Lysozymes, c-type 1174 2004-03-16 2014-11-19 389852 ENSG00000171489 OTTHUMG00000021459 uc004diu.5 AY358844 NM_205856 CCDS14286 Q96QH8 16382448 MGI:2685564 RGD:1584964 SPACA5 300593 +HGNC:19142 SPACA5B sperm acrosome associated 5B protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 LYZL5B Lysozymes, c-type 1174 2007-01-08 2016-10-05 729201 ENSG00000171478 OTTHUMG00000021465 uc064ywr.1 NM_001079900 CCDS35238 Q96QH8 16382448 MGI:2685564 SPACA5B +HGNC:27113 SPACA6 sperm acrosome associated 6 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 LET7EH "sperm acrosome associated 6|Let-7e host" "NCRNA00085|LINC00085|SPACA6P" "non-protein coding RNA 85|long intergenic non-protein coding RNA 85|sperm acrosome associated 6, pseudogene" 2008-09-02 2015-11-04 2015-11-04 2015-11-04 147650 ENSG00000182310 OTTHUMG00000177373 "AY358799|BC041134" NR_024330 CCDS82386 W5XKT8 "24275887|23044541" MGI:1922452 RGD:1588836 +HGNC:49383 SPACA6P-AS SPACA6P antisense RNA non-coding RNA RNA, long non-coding Approved 19q13.41 19q13.41 LINC01129 long intergenic non-protein coding RNA 1129 2013-10-18 2013-10-24 2013-10-24 2013-10-24 102238594 ENSG00000269959 OTTHUMG00000183887 AK125996 NR_108100 +HGNC:29575 SPACA7 sperm acrosome associated 7 protein-coding gene gene with protein product Approved 13q34 13q34 C13orf28 chromosome 13 open reading frame 28 2006-08-04 2011-03-15 2011-03-15 2014-11-18 122258 ENSG00000153498 OTTHUMG00000017365 uc001vsd.3 BC016750 NM_145248 CCDS9524 Q96KW9 22495889 MGI:1925884 RGD:1597409 SPACA7 +HGNC:1367 SPACA9 sperm acrosome associated 9 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 Mast C9orf9 chromosome 9 open reading frame 9 1999-08-23 2016-04-22 2016-04-22 2016-04-22 11092 ENSG00000165698 OTTHUMG00000020847 uc004cby.2 NM_018956 "CCDS6955|CCDS83434" Q96E40 24256100 MGI:1917237 RGD:727909 +HGNC:11212 SPAG1 sperm associated antigen 1 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 "SP75|FLJ32920|HSD-3.8|TPIS|CT140|CILD28" Tetratricopeptide repeat domain containing 769 1997-09-12 2016-10-05 6674 ENSG00000104450 OTTHUMG00000164706 uc003yjh.3 AF311312 NM_172218 CCDS34930 Q07617 "16368546|24055112" MGI:1349387 RGD:1310702 SPAG1 603395 367631 +HGNC:11214 SPAG4 sperm associated antigen 4 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "SUN4|CT127" "acrosomal protein ACR55|Sad1 and UNC84 domain containing 4|cancer/testis antigen 127" 1998-08-26 2016-10-05 6676 ENSG00000061656 OTTHUMG00000032352 uc002xdb.2 AF043344 NM_003116 CCDS13259 Q9NPE6 "9691178|10373309" MGI:2444120 RGD:620151 SPAG4 603038 +HGNC:13452 SPAG5 sperm associated antigen 5 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "DEEPEST|MAP126|hMAP126" "mitotic spindle coiled-coil related protein|astrin|mitotic spindle associated protein p126" 2002-10-08 2008-07-18 10615 ENSG00000076382 OTTHUMG00000166586 uc002hbq.4 AF063308 NM_006461 CCDS32594 Q96R06 11549262 MGI:1927470 RGD:620152 SPAG5 615562 +HGNC:41140 SPAG5-AS1 SPAG5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q11.2 17q11.2 SPAG5 antisense RNA 1 (non-protein coding) 2011-09-05 2012-08-15 2014-11-19 100506436 ENSG00000227543 OTTHUMG00000132827 uc060daj.1 NR_040012 +HGNC:11215 SPAG6 sperm associated antigen 6 protein-coding gene gene with protein product Approved 10p12.2 10p12.2 "Repro-SA-1|pf16|CT141" axoneme central apparatus protein Armadillo repeat containing 409 1999-04-23 2016-10-05 9576 ENSG00000077327 OTTHUMG00000017808 uc001iri.4 AF079363 NM_012443 "CCDS7139|CCDS7140|CCDS58071|CCDS73072" O75602 "10493827|24071998" MGI:3040687 RGD:1305616 SPAG6 605730 +HGNC:11216 SPAG7 sperm associated antigen 7 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "FSA-1|ACRP|MGC20134" 1999-05-28 2008-07-18 9552 ENSG00000091640 OTTHUMG00000177733 uc002gae.4 AF047437 NM_004890 CCDS42240 O75391 9653160 MGI:107380 RGD:1305473 SPAG7 610056 +HGNC:14105 SPAG8 sperm associated antigen 8 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "hSMP-1|HSD-1|BS-84|SPAG3|CT142" 2001-01-10 2015-04-30 26206 ENSG00000137098 OTTHUMG00000019875 uc003zye.4 U12978 NM_012436 "CCDS6592|CCDS43798" Q99932 "10500252|8788182" MGI:3056295 RGD:1307079 SPAG8 605731 +HGNC:14524 SPAG9 sperm associated antigen 9 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "HSS|SYD1|KIAA0516|MGC14967|MGC74461|MGC117291|JLP|PHET|HLC4|PIG6|FLJ13450|FLJ14006|FLJ26141|FLJ34602|CT89" "sperm surface protein|JNK/SAPK-associated protein|JNK interacting protein|sperm specific protein|c-Jun NH2-terminal kinase-associated leucine zipper protein|Max-binding protein|JNK-associated leucine-zipper protein|HLC-4 protein|lung cancer oncogene 4|proliferation-inducing gene 6|cancer/testis antigen 89" 2001-02-09 2013-09-23 9043 ENSG00000008294 OTTHUMG00000162316 uc002itb.4 AB011088 NM_003971 "CCDS11577|CCDS45740|CCDS58577|CCDS58578" O60271 "9480848|11106729" MGI:1918084 RGD:1311289 SPAG9 605430 +HGNC:33342 SPAG11A sperm associated antigen 11A protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "HE2|EDDM2A" epididymal protein 2A 2007-03-15 2007-03-15 2015-09-08 653423 ENSG00000178287 OTTHUMG00000162440 uc003wrw.4 NM_001081552 CCDS43700 Q6PDA7 RGD:2324475 SPAG11A +HGNC:14534 SPAG11B sperm associated antigen 11B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "HE2|EP2|EP2C|EP2D|EDDM2B" epididymal protein 2B 2001-02-22 2007-03-15 2007-03-15 2015-09-10 10407 ENSG00000164871 OTTHUMG00000129219 uc003wrm.4 AF168616 "NM_058202|NM_058200|NM_058201|NM_016512|NM_058203|NM_058206|NM_058207" "CCDS5964|CCDS5965|CCDS5966|CCDS5967|CCDS47774" Q08648 "8167223|1693137" MGI:3647173 RGD:1562239 SPAG11B 606560 +HGNC:23225 SPAG16 sperm associated antigen 16 protein-coding gene gene with protein product Approved 2q34 02q34 "PF20|FLJ22724|DKFZp666P1710|WDR29" WD repeat domain containing 362 2004-10-13 2014-11-19 79582 ENSG00000144451 OTTHUMG00000133015 uc002veq.5 AF310672 NM_024532 "CCDS2396|CCDS46508" Q8N0X2 "12391165|11867345" MGI:1913972 RGD:1565062 SPAG16 612173 +HGNC:26620 SPAG17 sperm associated antigen 17 protein-coding gene gene with protein product Approved 1p12 01p12 "FLJ34497|PF6|RP4-776P7.2|CT143" 2005-08-11 2014-11-19 200162 ENSG00000155761 OTTHUMG00000012198 uc001ehk.3 NM_206996 CCDS899 Q6Q759 MGI:1921612 RGD:1592218 SPAG17 616554 +HGNC:11217 SPAM1 sperm adhesion molecule 1 protein-coding gene gene with protein product Approved 7q31 07q31 "HYAL5|PH-20|SPAG15" PH-20 hyaluronidase sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding) 1995-07-18 2016-03-15 2016-03-15 6677 ENSG00000106304 OTTHUMG00000157284 uc003vle.4 L13781 NM_153189 "CCDS5790|CCDS5791" P38567 "8282124|8575780" MGI:1921718 RGD:620547 SPAM1 600930 +HGNC:11218 SPANXA1 sperm protein associated with the nucleus, X-linked, family member A1 protein-coding gene gene with protein product Approved Xq27.2 Xq27.2 "NAP-X|SPAN-Xa|SPAN-Xb|CT11.1" cancer/testis antigen family 11, member 1 SPANX sperm protein associated with the nucleus, X chromosome, family member A1 2000-03-03 2003-09-12 2014-11-19 30014 ENSG00000198021 OTTHUMG00000022564 uc065bkj.1 AF098306 NM_013453 CCDS14674 Q9NS26 10906052 SPANXA1 300305 +HGNC:14328 SPANXA2 SPANX family member A2 protein-coding gene gene with protein product Approved Xq27.2 Xq27.2 SPANX SPANX family, member A2 2001-01-03 2015-11-18 2015-11-18 728712 ENSG00000203926 OTTHUMG00000022565 uc004fbo.4 XM_016999968 CCDS44007 Q9NS26 SPANXA2 300493 +HGNC:31683 SPANXA2-OT1 SPANXA2 overlapping transcript 1 non-coding RNA RNA, long non-coding Approved Xq27.2 Xq27.2 FLJ36186 CXorf18 "chromosome X open reading frame 18|SPANXA2 overlapping transcript 1 (non-protein coding)" 2005-10-06 2011-08-31 2014-06-02 2015-01-30 619455 ENSG00000277215 OTTHUMG00000022566 uc065bki.1 AK093505 NR_037183 Q8N9U9 +HGNC:14329 SPANXB1 SPANX family member B1 protein-coding gene gene with protein product Approved Xq27.1 Xq27.1 CT11.2 cancer/testis antigen family 11, member 2 "SPANXB2|SPANXF1|SPANXF2" "SPANX family, member B2|SPANX family, member F1|SPANX family, member F2|SPANX family, member B1" 2001-01-03 2015-11-18 2015-11-18 728695 ENSG00000227234 OTTHUMG00000022554 uc004fbi.3 NM_032461 CCDS44006 Q9NS25 SPANXB1 300669 +HGNC:14331 SPANXC SPANX family member C protein-coding gene gene with protein product Approved Xq27.2 Xq27.2 "CTp11|CT11.3" cancer/testis antigen family 11, member 3 SPANX family, member C 2001-01-03 2015-11-18 2015-11-18 64663 ENSG00000198573 OTTHUMG00000022556 uc033exl.2 AJ238277 NM_022661 CCDS14673 Q9NY87 10626816 SPANXC 300330 +HGNC:14332 SPANXD SPANX family member D protein-coding gene gene with protein product Approved Xq27.2 Xq27.2 CT11.4 cancer/testis antigen family 11, member 4 SPANXE "SPANX family, member E|SPANX family, member D" 2001-01-03 2015-11-18 2015-11-18 64648 ENSG00000196406 OTTHUMG00000022563 uc004fbq.5 AJ457791 NM_032417 CCDS14675 Q9BXN6 SPANXD "300670|300671" +HGNC:33174 SPANXN1 SPANX family member N1 protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 "SPANX-N1|CT11.6" cancer/testis antigen family 11, member 6 SPANX family, member N1 2006-11-13 2015-11-18 2015-11-18 494118 ENSG00000203923 OTTHUMG00000022593 uc004fcb.3 NM_001009614 CCDS35421 Q5VSR9 "14973187|17012309" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SPANXN1 SPANXN1 300664 +HGNC:33175 SPANXN2 SPANX family member N2 protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 "SPANX-N2|CT11.7" cancer/testis antigen family 11, member 7 SPANX family, member N2 2006-11-13 2015-11-18 2015-11-18 494119 ENSG00000268988 OTTHUMG00000022583 uc033exw.1 NM_001009615 CCDS35419 Q5MJ10 "14973187|17012309" SPANXN2 300665 +HGNC:33176 SPANXN3 SPANX family member N3 protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 "SPANX-N3|CT11.8" cancer/testis antigen family 11, member 8 SPANX family, member N3 2006-11-13 2015-11-18 2015-11-18 139067 ENSG00000189252 OTTHUMG00000022582 uc004fbw.4 NM_001009609 CCDS35418 Q5MJ09 "14973187|17012309" SPANXN3 300666 +HGNC:33177 SPANXN4 SPANX family member N4 protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 "SPANX-N4|CT11.9" cancer/testis antigen family 11, member 9 SPANX family, member N4 2006-11-13 2015-11-18 2015-11-18 441525 ENSG00000189326 OTTHUMG00000022575 uc004fbv.4 DQ336126 NM_001009613 CCDS48178 Q5MJ08 "14973187|17012309" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SPANXN4 SPANXN4 300667 +HGNC:33178 SPANXN5 SPANX family member N5 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "SPANX-N5|CT11.10" cancer/testis antigen family 11, member 10 SPANX family, member N5 2006-11-13 2015-11-18 2015-11-18 494197 ENSG00000204363 OTTHUMG00000021590 uc004drc.2 NM_001009616 CCDS35295 Q5MJ07 "14973187|17012309" SPANXN5 300668 +HGNC:11219 SPARC secreted protein acidic and cysteine rich protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "cysteine-rich protein|secreted protein acidic and rich in cysteine" ON osteonectin SPARC family 1278 2001-06-22 2016-01-28 2016-10-05 6678 ENSG00000113140 OTTHUMG00000130122 uc003lui.5 NM_003118 CCDS4318 P09486 "2838412|3410046" MGI:98373 RGD:3742 SPARC 182120 434708 +HGNC:11220 SPARCL1 SPARC like 1 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 MAST9 hevin SPARC-like 1 (mast9, hevin) SPARC family 1278 1998-09-17 2015-11-13 2016-10-05 8404 ENSG00000152583 OTTHUMG00000130605 uc003hqs.5 X86693 NM_001128310 "CCDS3622|CCDS77939" Q14515 "8488563|7600298|16844696" MGI:108110 RGD:2531 SPARCL1 606041 +HGNC:16351 SPAR entry withdrawn withdrawn withdrawn Entry Withdrawn 2009-05-08 +HGNC:11233 SPAST spastin protein-coding gene gene with protein product Approved 2p22.3 02p22.3 "FSP2|ADPSP|KIAA1083" SPG4 spastic paraplegia 4 (autosomal dominant; spastin) AAA ATPases 413 1993-10-28 2005-03-17 2005-03-15 2016-10-12 6683 ENSG00000021574 OTTHUMG00000128455 uc002roc.4 AJ246001 NM_199436 "CCDS1778|CCDS1779" Q9UBP0 "10493830|10610178" MGI:1858896 RGD:1308494 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_714|http://www.lrg-sequence.org/LRG/LRG_714" SPAST 604277 119801 +HGNC:14682 SPATA1 spermatogenesis associated 1 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 SP-2 2001-03-01 2016-09-30 100505741 ENSG00000122432 OTTHUMG00000009924 AF306347 NM_022354 Q5VX52 MGI:1918201 RGD:1359500 SPATA1 +HGNC:14681 SPATA2 spermatogenesis associated 2 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "KIAA0757|PD1|tamo|PPP1R145" protein phosphatase 1, regulatory subunit 145 Protein phosphatase 1 regulatory subunits 694 2001-03-15 2014-11-19 9825 ENSG00000158480 OTTHUMG00000032704 uc002xuw.5 AB018300 NM_006038 CCDS13422 Q9UM82 MGI:2146885 RGD:620754 SPATA2 607662 +HGNC:28393 SPATA2L spermatogenesis associated 2 like protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "MGC26885|tamo" C16orf76 chromosome 16 open reading frame 76 2006-07-04 2007-01-30 2016-01-14 2016-01-14 124044 ENSG00000158792 OTTHUMG00000138047 uc002foj.4 AF070574 NM_152339 CCDS10985 Q8IUW3 8619474 MGI:1926029 RGD:1560840 SPATA2L +HGNC:39446 SPATA2P1 spermatogenesis associated 2 pseudogene 1 pseudogene pseudogene Approved 13q21.1 13q21.1 2011-01-12 2011-01-12 100873966 ENSG00000228319 OTTHUMG00000016987 NG_032304 PGOHUM00000248604 +HGNC:17884 SPATA3 spermatogenesis associated 3 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 TSARG1 2002-01-25 2015-08-26 130560 ENSG00000173699 OTTHUMG00000133221 uc061tla.1 AY032925 NM_139073 CCDS2481 Q8NHX4 MGI:1917310 RGD:1308164 SPATA3 +HGNC:28013 SPATA3-AS1 SPATA3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 2q37.1 02q37.1 2013-10-14 2014-11-19 348761 ENSG00000238062 OTTHUMG00000154076 NR_033879 12477932 +HGNC:17333 SPATA4 spermatogenesis associated 4 protein-coding gene gene with protein product Approved 4q34.2 04q34.2 "TSARG2|SPEF1B" 2002-01-25 2015-08-26 132851 ENSG00000150628 OTTHUMG00000160788 uc003iuo.2 AY040204 NM_144644 CCDS3826 Q8NEY3 MGI:1916531 RGD:1303065 SPATA4 609879 +HGNC:18119 SPATA5 spermatogenesis associated 5 protein-coding gene gene with protein product Approved 4q28.1 04q28.1 "SPAF|AFG2" ATPase family gene 2 homolog (S. cerevisiae) AAA ATPases 413 2002-02-04 2014-11-19 166378 ENSG00000145375 OTTHUMG00000133074 uc003iez.5 AF361489 NM_145207 CCDS3730 Q8NB90 16465403 MGI:1927170 RGD:1310478 SPATA5 613940 460755 +HGNC:28762 SPATA5L1 spermatogenesis associated 5 like 1 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 "MGC5347|FLJ12286" AAA ATPases 413 2004-03-16 2016-01-14 2016-10-05 79029 ENSG00000171763 OTTHUMG00000131425 uc001zve.4 AK023232 NM_024063 "CCDS10123|CCDS81877" Q9BVQ7 12477932 MGI:3036261 RGD:1595990 SPATA5L1 +HGNC:18309 SPATA6 spermatogenesis associated 6 protein-coding gene gene with protein product Approved 1p33 01p33 "SRF1|FLJ10007|SRF-1" spermatogenesis-related factor-1 2002-02-28 2016-10-05 54558 ENSG00000132122 OTTHUMG00000007794 uc001crr.4 AK000869 NM_019073 "CCDS551|CCDS65535|CCDS72787" Q9NWH7 MGI:1915196 RGD:628657 SPATA6 613947 +HGNC:25472 SPATA6L spermatogenesis associated 6 like protein-coding gene gene with protein product Approved 9p24.2-p24.1 09p24.2-p24.1 FLJ10058 C9orf68 chromosome 9 open reading frame 68 2004-01-06 2012-03-15 2016-01-14 2016-10-11 55064 ENSG00000106686 OTTHUMG00000019469 uc011llz.3 AK000920 NM_017985 CCDS43785 Q8N4H0 MGI:1918036 RGD:1310039 SPATA6L +HGNC:20423 SPATA7 spermatogenesis associated 7 protein-coding gene gene with protein product Approved 14q31.3 14q31.3 HSD3 LCA3 Leber congenital amaurosis 3 2003-03-07 2014-11-19 55812 ENSG00000042317 OTTHUMG00000170744 uc001xwq.5 AF144487 XM_017021452 "CCDS9883|CCDS32132" Q9P0W8 "9799089|19268277" MGI:2144877 RGD:621010 SPATA7 609868 178826 +HGNC:28676 SPATA8 spermatogenesis associated 8 protein-coding gene gene with protein product Approved 15q26.2 15q26.2 MGC44294 2005-01-10 2016-10-05 145946 ENSG00000185594 OTTHUMG00000149847 uc002bue.4 AY489187 NM_173499 CCDS10376 Q6RVD6 SPATA8 613948 +HGNC:48627 SPATA8-AS1 SPATA8 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 15q26.2 15q26.2 2013-05-29 2013-05-29 100652749 ENSG00000259282 OTTHUMG00000172033 NR_102753 +HGNC:22988 SPATA9 spermatogenesis associated 9 protein-coding gene gene with protein product Approved 5q15 05q15 "NYD-SP16|FLJ35906" 2003-09-01 2016-04-22 83890 ENSG00000145757 OTTHUMG00000121169 uc003klj.2 AK093225 NM_031952 CCDS4076 Q9BWV2 12493713 MGI:1922821 RGD:1308291 SPATA9 608039 +HGNC:23221 SPATA12 spermatogenesis associated 12 protein-coding gene gene with protein product Approved 3p14.3 03p14.3 2003-10-22 2016-10-05 353324 ENSG00000186451 OTTHUMG00000158862 uc003dij.1 AY221117 NM_181727 CCDS2879 Q7Z6I5 "22981541|17251597" SPATA12 609869 +HGNC:23222 SPATA13 spermatogenesis associated 13 protein-coding gene gene with protein product Approved 13q12.12 13q12.12 "FLJ31208|ARHGEF29" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors" "682|722" 2003-10-20 2016-10-05 221178 ENSG00000182957 OTTHUMG00000016578 uc001upg.4 AK055770 NM_153023 "CCDS9305|CCDS53857|CCDS66517|CCDS66518|CCDS73553" Q96N96 MGI:104838 RGD:1307364 SPATA13 613324 +HGNC:39905 SPATA13-AS1 SPATA13 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.12 13q12.12 SPATA13 antisense RNA 1 (non-protein coding) 2011-04-11 2012-08-15 2014-11-19 100874231 ENSG00000227213 OTTHUMG00000016580 uc031qkt.1 NR_046531 +HGNC:29935 SPATA16 spermatogenesis associated 16 protein-coding gene gene with protein product Approved 3q26.31 03q26.31 NYD-SP12 2005-01-25 2014-11-19 83893 ENSG00000144962 OTTHUMG00000156865 uc003fin.5 AF345909 NM_031955 CCDS3221 Q9BXB7 "12529416|17847006" MGI:1918112 RGD:1563726 SPATA16 609856 181121 +HGNC:25184 SPATA17 spermatogenesis associated 17 protein-coding gene gene with protein product Approved 1q41 01q41 IQCH IQ motif containing H 2006-03-24 2014-11-19 128153 ENSG00000162814 OTTHUMG00000037875 uc001hlh.2 AK098591 NM_138796 CCDS1519 Q96L03 16395525 MGI:1921967 RGD:1565282 SPATA17 611032 +HGNC:41086 SPATA17-AS1 SPATA17 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q41 01q41 2013-10-28 2014-11-19 103752555 ENSG00000234070 OTTHUMG00000038051 AI025201 NR_125784 +HGNC:29579 SPATA18 spermatogenesis associated 18 protein-coding gene gene with protein product Approved 4q12 04q12 FLJ32906 spermatogenesis associated 18 homolog (rat) 2005-04-15 2012-01-23 2016-10-05 132671 ENSG00000163071 OTTHUMG00000128698 uc003gzl.4 BC025396 NM_145263 "CCDS3489|CCDS75124" Q8TC71 21300779 MGI:1920722 RGD:735208 SPATA18 612814 +HGNC:30614 SPATA19 spermatogenesis associated 19 protein-coding gene gene with protein product Approved 11q25 11q25 "FLJ25851|spergen1|SPAS1|CT132" "spergen 1|cancer/testis antigen 132" 2005-05-24 2014-11-19 219938 ENSG00000166118 OTTHUMG00000167120 uc001qgv.2 AK098717 NM_174927 CCDS8493 Q7Z5L4 12477932 MGI:1922719 RGD:620628 SPATA19 609805 +HGNC:26125 SPATA20 spermatogenesis associated 20 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "FLJ21347|SSP411|Tisp78" hypothetical protein FLJ21347 2005-05-25 2011-03-17 64847 ENSG00000006282 OTTHUMG00000162162 uc002ird.4 NM_022827 "CCDS11571|CCDS58563|CCDS58564" Q8TB22 12477932 MGI:2183449 RGD:735087 SPATA20 613939 +HGNC:39636 SPATA20P1 spermatogenesis associated 20 pseudogene 1 pseudogene pseudogene Approved 21q22.13 21q22.13 2011-03-17 2011-03-17 100874060 ENSG00000231123 OTTHUMG00000090612 NG_032331 PGOHUM00000239082 +HGNC:28026 SPATA21 spermatogenesis associated 21 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "spergen-2|spergen2" EF-hand domain containing 863 2005-07-13 2015-08-26 374955 ENSG00000187144 OTTHUMG00000002312 uc001ayn.3 NM_198546 CCDS172 Q7Z572 MGI:3607787 RGD:1302954 SPATA21 +HGNC:30705 SPATA22 spermatogenesis associated 22 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 NYD-SP20 2005-12-19 2014-11-19 84690 ENSG00000141255 OTTHUMG00000177609 uc010vrg.4 AY035868 NM_032598 "CCDS11027|CCDS54066|CCDS54067|CCDS82036" Q8NHS9 12477932 MGI:2685728 RGD:1565378 SPATA22 +HGNC:27322 SPATA24 spermatogenesis associated 24 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "T6441|CCDC161" coiled-coil domain containing 161 2009-09-30 2009-09-30 2014-02-12 202051 ENSG00000170469 OTTHUMG00000163388 uc003lek.3 AK098740 NM_194296 CCDS47274 Q86W54 16146721 MGI:1918492 RGD:1311742 SPATA24 +HGNC:16158 SPATA25 spermatogenesis associated 25 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ337O18.8|TSG23" C20orf165 chromosome 20 open reading frame 165 2001-07-17 2011-11-24 2011-11-24 2015-08-26 128497 ENSG00000149634 OTTHUMG00000032628 uc002xqf.4 AL008726 NM_080608 CCDS13383 Q9BR10 19240080 MGI:1922892 RGD:1564523 +HGNC:23394 SPATA31A1 SPATA31 subfamily A member 1 protein-coding gene gene with protein product Approved 9p12 09p12 "DKFZP434B204|C9orf36A" "C9orf36|FAM75A1|SPATA31A2|FAM75A2" "chromosome 9 open reading frame 36|family with sequence similarity 75, member A1|SPATA31 subfamily A, member 2|family with sequence similarity 75, member A2" 2003-11-14 2012-10-12 2016-06-07 2016-06-07 647060 ENSG00000204849 OTTHUMG00000013156 uc064tes.1 NM_001085452 CCDS43808 Q5TZJ5 20850414 MGI:1925374 +HGNC:32003 SPATA31A3 SPATA31 subfamily A member 3 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 "OTTHUMG00000013164|DKFZp434B204" FAM75A3 family with sequence similarity 75, member A3 2007-03-20 2012-10-12 2016-06-07 2016-10-05 727830 ENSG00000275969 OTTHUMG00000188260 uc010mmj.5 NM_001083124 CCDS78400 Q5VYP0 20850414 MGI:1925374 +HGNC:32005 SPATA31A5 SPATA31 subfamily A member 5 protein-coding gene gene with protein product Approved 9q12 09q12 OTTHUMG00000013204 FAM75A5 family with sequence similarity 75, member A5 2007-03-20 2012-10-12 2016-06-07 2016-10-05 727905 ENSG00000276581 OTTHUMG00000188283 uc004abu.6 NM_001113541 CCDS47970 Q5VU36 20850414 MGI:1925374 SPATA31A5 +HGNC:32006 SPATA31A6 SPATA31 subfamily A member 6 protein-coding gene gene with protein product Approved 9p11.2 09p11.2 OTTHUMG00000013224 FAM75A6 family with sequence similarity 75, member A6 2007-03-20 2012-10-12 2016-06-07 2016-06-07 389730 ENSG00000185775 OTTHUMG00000013224 uc033csq.2 NM_001145196 CCDS75837 Q5VVP1 20850414 MGI:1925374 RGD:727950 +HGNC:32007 SPATA31A7 SPATA31 subfamily A member 7 protein-coding gene gene with protein product Approved 9q12 09q12 "FAM75A7|SPATA31A4|FAM75A4" "family with sequence similarity 75, member A7|SPATA31 subfamily A, member 4|family with sequence similarity 75, member A4" 2007-03-20 2012-10-12 2016-06-07 2016-06-07 26165 ENSG00000276040 OTTHUMG00000188536 uc033ctg.2 NM_015667 CCDS75838 Q8IWB4 20850414 MGI:1925374 616584 +HGNC:31411 SPATA31B1P SPATA31 subfamily B member 1, pseudogene pseudogene pseudogene Approved 9q21.32 09q21.32 bA388B24.2 "C9orf36B|FAM75B|SPATA31B1" "chromosome 9 open reading frame 36B|family with sequence similarity 75, member B|SPATA31 subfamily B, member 1" 2004-04-14 2014-04-01 2016-06-07 2016-09-27 404770 ENSG00000231649 OTTHUMG00000020090 NG_046749 Q5VZV4 PGOHUM00000306611 +HGNC:27846 SPATA31C1 SPATA31 subfamily C member 1 other unknown Approved 9q22.1 09q22.1 FLJ36055 FAM75C1 family with sequence similarity 75, member C1 2007-07-04 2012-10-12 2016-06-07 2016-06-07 441452 ENSG00000230246 OTTHUMG00000020160 AK093374 NM_001145124 P0DKV0 PGOHUM00000236683 +HGNC:24508 SPATA31C2 SPATA31 subfamily C member 2 other unknown Approved 9q22.1 09q22.1 DKFZP434M131 FAM75C2 family with sequence similarity 75, member C2 2007-07-04 2012-10-12 2016-06-07 2016-06-07 645961 ENSG00000177910 OTTHUMG00000020164 NM_001166137 B4DYI2 PGOHUM00000306612 +HGNC:37283 SPATA31D1 SPATA31 subfamily D member 1 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 FLJ46321 FAM75D1 family with sequence similarity 75, member D1 2010-08-18 2012-10-12 2016-06-07 2016-06-07 389763 ENSG00000214929 OTTHUMG00000169122 uc004amn.3 NM_001001670 CCDS47986 Q6ZQQ2 "MGI:1919469|MGI:1921474|MGI:3045260|MGI:3646080" RGD:1565972 +HGNC:38607 SPATA31D2P SPATA31 subfamily D member 2, pseudogene pseudogene pseudogene Approved 9q21.32 09q21.32 FAM75D2P family with sequence similarity 75, member D2, pseudogene 2010-08-18 2012-10-12 2016-06-07 2016-06-07 100130636 ENSG00000237770 OTTHUMG00000020089 NG_009643 PGOHUM00000236662 +HGNC:38603 SPATA31D3 SPATA31 subfamily D member 3 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 FLJ44082 FAM75D3 family with sequence similarity 75, member D3 2010-08-18 2012-10-12 2016-06-07 2016-07-19 389762 ENSG00000186788 OTTHUMG00000020084 uc284qyp.1 NM_207416 CCDS83380 P0C874 "MGI:1919469|MGI:1921474|MGI:3045260|MGI:3646080" RGD:1561563 +HGNC:38601 SPATA31D4 SPATA31 subfamily D member 4 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 FLJ43859 FAM75D4 family with sequence similarity 75, member D4 2010-08-18 2012-10-12 2016-06-07 2016-07-19 389761 ENSG00000189357 OTTHUMG00000020088 uc284qyo.1 NM_001145197 CCDS83379 Q6ZUB0 "MGI:1919469|MGI:1921474|MGI:3045260|MGI:3646080" +HGNC:38602 SPATA31D5P SPATA31 subfamily D member 5, pseudogene pseudogene pseudogene Approved 9q21.32 09q21.32 "FLJ43950|FAM75D5P" FAM75D5 "family with sequence similarity 75, member D5|family with sequence similarity 75, member D5, pseudogene" 2010-08-18 2012-10-12 2016-06-07 2016-06-07 347127 ENSG00000240632 OTTHUMG00000020087 NR_026851 PGOHUM00000236659 +HGNC:26672 SPATA31E1 SPATA31 subfamily E member 1 protein-coding gene gene with protein product Approved 9q22.1 09q22.1 FLJ35866 "C9orf79|FAM75E1" "chromosome 9 open reading frame 79|family with sequence similarity 75, member E1" 2004-01-27 2012-10-12 2016-06-07 2016-10-05 286234 ENSG00000177992 OTTHUMG00000020157 uc004app.5 AK093185 NM_178828 CCDS6676 Q6ZUB1 +HGNC:43827 SPATA31E2P SPATA31 subfamily E member 2, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 FAM75E2P family with sequence similarity 75, member E2, pseudogene 2012-03-16 2012-10-12 2016-06-07 2016-06-07 646177 ENSG00000258916 OTTHUMG00000171666 NG_022095 PGOHUM00000246620 +HGNC:43828 SPATA31E3P SPATA31 subfamily E member 3, pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 FAM75E3P family with sequence similarity 75, member E3, pseudogene 2012-03-16 2012-10-12 2016-06-07 2016-06-07 646507 ENSG00000274279 OTTHUMG00000188383 NG_022101 PGOHUM00000293125 +HGNC:26349 SPATA32 spermatogenesis associated 32 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "FLJ25414|AEP2|VAD1.2" acrosome expressed 2 "C17orf46|TEX34" "chromosome 17 open reading frame 46|testis expressed 34" 2005-12-13 2012-10-08 2012-10-08 2014-11-18 124783 ENSG00000184361 OTTHUMG00000180363 uc002iis.1 AK058143 NM_152343 CCDS32669 Q96LK8 18621766 MGI:3045340 RGD:1359156 +HGNC:26463 SPATA33 spermatogenesis associated 33 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 FLJ31606 C16orf55 chromosome 16 open reading frame 55 2005-04-12 2013-07-05 2013-07-05 2014-11-19 124045 ENSG00000167523 OTTHUMG00000138048 AK056168 NM_153025 "CCDS10983|CCDS62012|CCDS73929" Q96N06 23844118 MGI:2444920 RGD:1561507 615409 +HGNC:48613 SPATA41 spermatogenesis associated 41 (non-protein coding) non-coding RNA RNA, long non-coding Approved 15q26.3 15q26.3 "FLJ42289|HSD47" 2013-05-24 2013-10-31 388182 ENSG00000189419 OTTHUMG00000172281 "AK057536|AK124283|BC028144|DB060272" NR_028139 +HGNC:41198 SPATA42 spermatogenesis associated 42 (non-protein coding) non-coding RNA RNA, long non-coding Approved 1p13.3 01p13.3 "SRG7|AKNAD1-AS1" "spermatogenesis-related gene 7|AKNAD1 antisense RNA 1" 2013-06-03 2014-11-19 642864 ENSG00000203897 OTTHUMG00000011731 NR_034168 +HGNC:33709 SPATA45 spermatogenesis associated 45 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 LOC149643 C1orf227 chromosome 1 open reading frame 227 2009-03-12 2014-02-21 2014-02-21 2014-02-21 149643 ENSG00000185523 OTTHUMG00000036920 NM_001024601 CCDS31020 Q537H7 MGI:1922808 RGD:1591344 +HGNC:30510 SPATC1 spermatogenesis and centriole associated 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "MGC61633|SPATA15|SPERIOLIN" 2005-01-11 2014-11-19 375686 ENSG00000186583 OTTHUMG00000156976 uc011lkw.3 BC053547 NM_198572 "CCDS6413|CCDS47937" Q76KD6 15280373 MGI:1921531 RGD:1565316 SPATC1 610874 +HGNC:1298 SPATC1L spermatogenesis and centriole associated 1-like protein-coding gene gene with protein product Approved 21q22.3 21q22.3 speriolin-like protein C21orf56 chromosome 21 open reading frame 56 2000-05-23 2012-11-12 2012-11-12 2015-08-26 84221 ENSG00000160284 OTTHUMG00000090487 uc011afu.3 BC009497 NM_032261 "CCDS13732|CCDS46653" Q9H0A9 MGI:1923823 RGD:1562578 612412 +HGNC:22957 SPATS1 spermatogenesis associated serine rich 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "SPATA8|FLJ25442|SRSP1" spermatogenesis associated, serine-rich 1 2003-08-08 2016-03-11 2016-03-11 221409 ENSG00000249481 OTTHUMG00000014764 uc021yzz.2 AK058171 NM_145026 CCDS4911 Q496A3 MGI:1918270 RGD:631367 SPATS1 +HGNC:18650 SPATS2 spermatogenesis associated serine rich 2 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "SPATA10|SCR59|FLJ13117" spermatogenesis associated, serine-rich 2 2003-09-01 2016-03-11 2016-03-11 65244 ENSG00000123352 OTTHUMG00000169419 uc009zli.2 AK023179 NM_023071 CCDS31794 Q86XZ4 "11944913|17989879" MGI:1919822 RGD:1304780 SPATS2 611667 +HGNC:24574 SPATS2L spermatogenesis associated serine rich 2 like protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "DNAPTP6|SGNP" "DNA polymerase transactivated protein 6|stress granule and nucleolar protein" spermatogenesis associated, serine-rich 2-like 2009-06-12 2016-03-11 2016-03-11 26010 ENSG00000196141 OTTHUMG00000154589 uc002uvn.5 AF193059 NM_015535 "CCDS46483|CCDS46484|CCDS74621|CCDS74622" Q9NUQ6 "19005571|22792082" MGI:1914448 RGD:1309930 SPATS2L 613817 +HGNC:26913 SPC24 SPC24, NDC80 kinetochore complex component protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ90806 SPBC24 "spindle pole body component 24 homolog (S. cerevisiae)|SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)" 2005-02-22 2007-03-02 2013-06-05 2014-11-19 147841 ENSG00000161888 OTTHUMG00000180798 uc002mql.3 AK075287 NM_182513 CCDS45974 Q8NBT2 MGI:1914879 RGD:1307631 SPC24 609394 +HGNC:24031 SPC25 SPC25, NDC80 kinetochore complex component protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "MGC22228|AD024" SPBC25 "spindle pole body component 25 homolog (S. cerevisiae)|SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)" 2005-02-22 2007-03-02 2013-06-05 2014-11-19 57405 ENSG00000152253 OTTHUMG00000132181 uc002uel.4 AF225416 NM_020675 CCDS2229 Q9HBM1 12477932 MGI:1913692 RGD:1307811 SPC25 609395 +HGNC:23401 SPCS1 signal peptidase complex subunit 1 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "SPC12|HSPC033|YJR010C-A|SPC1" signal peptidase complex 12 kDa subunit signal peptidase complex subunit 1 homolog (S. cerevisiae) 2005-01-05 2015-07-23 2016-10-05 28972 ENSG00000114902 OTTHUMG00000154930 uc062kpj.1 AF092138 NM_014041 CCDS33769 Q9Y6A9 "8632014|24009510" MGI:1916269 RGD:1309125 SPCS1 610358 +HGNC:28962 SPCS2 signal peptidase complex subunit 2 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 KIAA0102 signal peptidase 25kDa subunit signal peptidase complex subunit 2 homolog (S. cerevisiae) 2005-01-05 2015-07-23 2015-07-23 9789 ENSG00000118363 OTTHUMG00000165517 uc001ovu.2 D14658 NM_014752 CCDS44681 Q15005 "8632014|24480542" MGI:1913874 RGD:1311253 SPCS2 +HGNC:31885 SPCS2P1 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene 1 pseudogene pseudogene Approved 15q15.2 15q15.2 SPCS2P signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene 2005-01-05 2013-03-11 2013-03-11 2014-11-19 100131250 ENSG00000260928 OTTHUMG00000176486 NG_022127 PGOHUM00000247099 +HGNC:45235 SPCS2P2 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene 2 pseudogene pseudogene Approved 10q24.31 10q24.31 2013-03-11 2016-08-16 644573 ENSG00000270623 OTTHUMG00000184686 NG_022158 PGOHUM00000289979 +HGNC:45236 SPCS2P3 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene 3 pseudogene pseudogene Approved 5p15.33 05p15.33 2013-03-11 2013-03-11 100288739 ENSG00000247872 OTTHUMG00000161652 NG_021874 PGOHUM00000235497 +HGNC:45237 SPCS2P4 signal peptidase complex subunit 2 homolog (S. cerevisiae) pseudogene 4 pseudogene pseudogene Approved 1p35.3 01p35.3 2013-03-11 2013-03-11 653566 ENSG00000228589 OTTHUMG00000003917 NG_006558 +HGNC:26212 SPCS3 signal peptidase complex subunit 3 protein-coding gene gene with protein product Approved 4q34.2 04q34.2 "FLJ22649|SPC22/23|SPC3|YLR066W|PRO3567" signal peptidase complex subunit 3 homolog (S. cerevisiae) 2005-01-05 2015-07-23 2015-09-08 60559 ENSG00000129128 OTTHUMG00000160789 uc003iur.5 AK092634 NM_021928 CCDS54823 P61009 "8632014|24480542" MGI:1923937 RGD:1588184 SPCS3 +HGNC:17257 SPDEF SAM pointed domain containing ETS transcription factor protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "PDEF|bA375E1.3" SAM pointed domain containing ets transcription factor ETS transcription factor family 534 2003-11-27 2013-08-07 2016-10-05 25803 ENSG00000124664 OTTHUMG00000014548 uc003ojq.3 AF071538 NM_012391 "CCDS4794|CCDS59013" O95238 "10625666|6857767" MGI:1353422 RGD:1594842 SPDEF 608144 +HGNC:26010 SPDL1 spindle apparatus coiled-coil protein 1 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "FLJ20364|hSpindly" spindly homolog (Drosophila) CCDC99 coiled-coil domain containing 99 2006-04-03 2012-09-27 2012-09-27 2014-11-18 54908 ENSG00000040275 OTTHUMG00000130438 uc003mae.5 BC012568 NM_017785 CCDS4370 Q96EA4 20427577 MGI:1917635 RGD:1306908 616401 +HGNC:30613 SPDYA speedy/RINGO cell cycle regulator family member A protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "SPY1|Ringo3" SPDY1 "speedy homolog 1 (Drosophila)|speedy homolog A (Xenopus laevis)" Speedy/RINGO cell cycle regulator family 756 2004-07-05 2006-03-31 2013-05-08 2016-10-05 245711 ENSG00000163806 OTTHUMG00000074041 uc002rmk.4 AA424209 NM_182756 CCDS1767 Q5MJ70 "11980914|12839962|15611625" MGI:1918141 RGD:621730 SPDYA 614029 +HGNC:32681 SPDYC speedy/RINGO cell cycle regulator family member C protein-coding gene gene with protein product Approved 11q13.1 11q13.1 Ringo2 speedy homolog C (Xenopus laevis) Speedy/RINGO cell cycle regulator family 756 2006-03-31 2013-05-08 2014-11-19 387778 ENSG00000204710 OTTHUMG00000165611 uc010rnz.3 AY820305 NM_001008778 CCDS31606 Q5MJ68 15611625 SPDYC 614030 +HGNC:16408 SPDYE1 speedy/RINGO cell cycle regulator family member E1 protein-coding gene gene with protein product Approved 7p13 07p13 "Ringo1|SPDYE" Speedy E WBSCR19 "Williams Beuren syndrome chromosome region 19|speedy homolog E1 (Xenopus laevis)" Speedy/RINGO cell cycle regulator family 756 2001-08-24 2009-02-17 2013-05-08 2016-10-05 285955 ENSG00000136206 OTTHUMG00000128985 uc003tjf.4 AF412027 NM_175064 CCDS5475 Q8NFV5 12073013 SPDYE1 +HGNC:33841 SPDYE2 speedy/RINGO cell cycle regulator family member E2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 MGC119295 speedy homolog E2 (Xenopus laevis) Speedy/RINGO cell cycle regulator family 756 2009-02-17 2013-05-08 2016-04-25 441273 ENSG00000205238 OTTHUMG00000150385 uc011kkx.3 AK302217 NM_001031618 CCDS34716 Q495Y8 SPDYE2 +HGNC:48334 SPDYE2B speedy/RINGO cell cycle regulator family member E2B protein-coding gene gene with protein product Approved 7q22.1 07q22.1 Speedy/RINGO cell cycle regulator family 756 2013-05-08 2015-09-08 100310812 ENSG00000173678 OTTHUMG00000158393 XM_011515702 CCDS59507 A6NHP3 +HGNC:35462 SPDYE3 speedy/RINGO cell cycle regulator family member E3 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 speedy homolog E3 (Xenopus laevis) Speedy/RINGO cell cycle regulator family 756 2009-02-17 2013-05-08 2016-04-25 441272 ENSG00000214300 OTTHUMG00000155462 uc022aij.1 BC056606 NM_001004351 CCDS47658 A6NKU9 SPDYE3 +HGNC:35463 SPDYE4 speedy/RINGO cell cycle regulator family member E4 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 speedy homolog E4 (Xenopus laevis) Speedy/RINGO cell cycle regulator family 756 2009-02-17 2013-05-08 2015-09-09 388333 ENSG00000183318 OTTHUMG00000178566 uc010cnz.1 BC146949 NM_001128076 CCDS45609 A6NLX3 RGD:1561076 SPDYE4 +HGNC:35464 SPDYE5 speedy/RINGO cell cycle regulator family member E5 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 speedy homolog E5 (Xenopus laevis) Speedy/RINGO cell cycle regulator family 756 2009-02-17 2013-05-08 2016-09-27 442590 ENSG00000170092 OTTHUMG00000156138 uc064emj.1 NM_001099435 CCDS78241 A6NIY4 +HGNC:35465 SPDYE6 speedy/RINGO cell cycle regulator family member E6 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 speedy homolog E6 (Xenopus laevis) Speedy/RINGO cell cycle regulator family 756 2009-02-17 2013-05-08 2015-09-08 729597 ENSG00000260097 OTTHUMG00000157126 uc033abc.2 NM_001146210 CCDS78265 P0CI01 SPDYE6 PGOHUM00000232945 +HGNC:35466 SPDYE7P speedy/RINGO cell cycle regulator family member E7, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 speedy homolog E7 (Xenopus laevis), pseudogene Speedy/RINGO cell cycle regulator family 756 2009-02-17 2013-05-08 2015-01-20 441251 ENSG00000179994 OTTHUMG00000150526 NR_003666 Q495Y7 PGOHUM00000302288 +HGNC:33771 SPDYE8P speedy/RINGO cell cycle regulator family member E8, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 speedy homolog E8 (Xenopus laevis), pseudogene Speedy/RINGO cell cycle regulator family 756 2009-02-17 2013-05-08 2015-01-20 728524 ENSG00000273520 OTTHUMG00000188238 NR_003664 PGOHUM00000302292 +HGNC:45034 SPDYE9P speedy/RINGO cell cycle regulator family member E9, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 speedy homolog E9 (Xenopus laevis), pseudogene Speedy/RINGO cell cycle regulator family 756 2013-01-17 2013-05-08 2016-09-27 643909 ENSG00000262461 OTTHUMG00000150524 NG_006532 PGOHUM00000302294 +HGNC:51506 SPDYE10P speedy/RINGO cell cycle regulator family member E10, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 2015-01-21 2015-01-21 643862 ENSG00000274570 OTTHUMG00000150525 NG_006252 PGOHUM00000302295 +HGNC:51507 SPDYE11 speedy/RINGO cell cycle regulator family member E11 other unknown Approved 7q11.23 07q11.23 2015-01-21 2015-01-21 100996746 ENSG00000275976 OTTHUMG00000188240 XM_006716210 PGOHUM00000302293 +HGNC:51508 SPDYE12P speedy/RINGO cell cycle regulator family member E12, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 2015-01-21 2015-01-21 100101268 ENSG00000184616 OTTHUMG00000156994 NG_006250 PGOHUM00000302302 +HGNC:51509 SPDYE13P speedy/RINGO cell cycle regulator family member E13, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 2015-01-22 2015-01-22 105180390 ENSG00000274959 OTTHUMG00000182946 NG_041824 PGOHUM00000302810 +HGNC:51510 SPDYE14P speedy/RINGO cell cycle regulator family member E14, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 2015-01-22 2015-01-22 641776 ENSG00000278807 OTTHUMG00000182948 NG_041823 PGOHUM00000302811 +HGNC:51511 SPDYE15P speedy/RINGO cell cycle regulator family member E15, pseudogene pseudogene pseudogene Approved 7q11.23 07q11.23 2015-01-22 2015-01-22 105180391 ENSG00000278080 OTTHUMG00000182950 NG_041825 PGOHUM00000302812 +HGNC:51512 SPDYE16 speedy/RINGO cell cycle regulator family member E16 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 2015-01-21 2015-09-08 102723555 ENSG00000185040 OTTHUMG00000155814 XM_006716211 A6NNV3 +HGNC:51513 SPDYE17 speedy/RINGO cell cycle regulator family member E17 other unknown Approved 7q11.23 07q11.23 2015-01-21 2015-01-22 102723849 ENSG00000186645 OTTHUMG00000155797 XM_006716212 PGOHUM00000302323 +HGNC:51514 SPDYE18 speedy/RINGO cell cycle regulator family member E18 other unknown Approved 7q11.23 07q11.23 2015-01-21 2015-01-21 100505767 ENSG00000205482 OTTHUMG00000155796 XM_005250742 MGI:3612701 PGOHUM00000302324 +HGNC:51515 SPDYE19P speedy/RINGO cell cycle regulator family member E19, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 2015-01-21 2015-01-21 100130307 ENSG00000275328 OTTHUMG00000187656 NG_022527 PGOHUM00000302028 +HGNC:51516 SPDYE20P speedy/RINGO cell cycle regulator family member E20, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 2015-01-21 2015-01-21 101060280 ENSG00000277327 OTTHUMG00000187660 PGOHUM00000302031 +HGNC:51517 SPDYE21P speedy/RINGO cell cycle regulator family member E21, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 2015-01-21 2015-01-21 442572 ENSG00000230358 OTTHUMG00000156921 NG_023412 PGOHUM00000302783 +HGNC:51518 SPDYE22P speedy/RINGO cell cycle regulator family member E22, pseudogene pseudogene pseudogene Approved 17q22 17q22 2015-01-21 2015-01-21 100420854 ENSG00000266537 OTTHUMG00000179363 NG_026195 PGOHUM00000294162 +HGNC:30615 SPECC1 sperm antigen with calponin homology and coiled-coil domains 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "HCMOGT-1|FLJ36955|NSP|CYTSB" "sperm antigen HCMOGT 1|cytokinesis and spindle organization B|cytospin B" 2005-05-25 2010-09-17 2010-09-17 2015-03-03 92521 ENSG00000128487 OTTHUMG00000179808 uc002gwq.4 "AY816329|AB041533" NM_152904 "CCDS32590|CCDS42280|CCDS42281|CCDS45628|CCDS58531" Q5M775 "15602574|18763323|15087372" MGI:2442356 RGD:1309718 SPECC1 608793 +HGNC:29022 SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "KIAA0376|CYTSA" "cytokinesis and spindle organization A|cytospin A" SPECC1-like 2006-10-19 2010-09-17 2016-06-07 2016-06-07 23384 ENSG00000100014 OTTHUMG00000171450 uc002zzv.6 AK025531 NM_015330 "CCDS33619|CCDS58797" Q69YQ0 9205841 MGI:1921642 RGD:1309570 SPECC1L 614140 270468 +HGNC:49185 SPECC1L-ADORA2A SPECC1L-ADORA2A readthrough (NMD candidate) other readthrough Approved 22q11.23 22q11.23 2013-09-25 2013-09-25 101730217 ENSG00000258555 OTTHUMG00000150762 NR_103546 +HGNC:15874 SPEF1 sperm flagellar 1 protein-coding gene gene with protein product Approved 20p13 20p13 "DKFZP434I114|SPEF1A|CLAMP" CaLponin-homology And Microtubule-associated Protein C20orf28 chromosome 20 open reading frame 28 2001-06-21 2007-08-20 2007-08-20 2016-07-13 25876 ENSG00000101222 OTTHUMG00000031756 uc002wjj.4 AL080154 XM_005260683 CCDS13063 Q9Y4P9 "15979255|25070955" MGI:3513546 RGD:1311267 SPEF1 610674 +HGNC:26293 SPEF2 sperm flagellar 2 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 "KPL2|FLJ23577|CT122" cancer/testis antigen 122 2007-08-20 2014-11-19 79925 ENSG00000152582 OTTHUMG00000131111 uc003jjo.4 AB051557 NM_144722 "CCDS3910|CCDS43309" Q9C093 "11214970|16549801|17610085" MGI:2443727 RGD:620450 SPEF2 610172 +HGNC:16901 SPEG SPEG complex locus protein-coding gene gene with protein product Approved 2q35 02q35 "MGC12676|KIAA1297|SPEGalpha|SPEGbeta|BPEG" APEG1 aortic preferentially expressed gene 1 I-set domain containing 593 2005-03-17 2006-04-27 2006-04-27 2014-11-19 10290 ENSG00000072195 OTTHUMG00000058925 uc010fwg.4 BC006346 NM_005876 "CCDS42824|CCDS54432" Q15772 "8663449|10973969" MGI:109282 RGD:2124 SPEG 615950 410675 objectId:2203 +HGNC:32429 SPEM1 spermatid maturation 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 FLJ40081 C17orf83 chromosome 17 open reading frame 83 2006-04-25 2008-02-04 2008-02-04 2014-11-19 374768 ENSG00000181323 OTTHUMG00000178189 uc002ggv.3 AK097400 NM_199339 CCDS42254 Q8N4L4 "17426145|20558241|21184802" MGI:1921538 RGD:1593311 SPEM1 615116 +HGNC:17575 SPEN spen family transcriptional repressor protein-coding gene gene with protein product Approved 1p36.21-p36.13 01p36.21-p36.13 "KIAA0929|MINT|SHARP|RBM15C" "SPEN homolog, transcriptional regulator (Drosophila)|spen homolog, transcriptional regulator (Drosophila)" RNA binding motif containing 725 2004-12-13 2013-10-17 2016-10-11 23013 ENSG00000065526 OTTHUMG00000009376 uc001axk.2 NM_015001 CCDS164 Q96T58 "10451362|11331609" MGI:1891706 RGD:1589867 SPEN 613484 +HGNC:30720 SPERT spermatid associated protein-coding gene gene with protein product Approved 13q14.13 13q14.13 "NURIT|CBY2" "spermatid flower-like structure protein|testis specific leucine zipper protein nurit|chibby homolog 2 (Drosophila)|chibby family member 2" 2006-03-14 2016-06-07 220082 ENSG00000174015 OTTHUMG00000016861 uc001van.3 AK093129 NM_152719 "CCDS9399|CCDS66540" Q8NA61 "12204287|20096028" MGI:1915176 RGD:1561044 SPERT +HGNC:15570 SPESP1 sperm equatorial segment protein 1 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 SP-ESP 2001-04-24 2014-11-19 246777 ENSG00000258484 OTTHUMG00000133321 uc002arn.2 AF275321 NM_145658 CCDS10230 Q6UW49 12773409 MGI:1913962 RGD:1563468 SPESP1 609399 +HGNC:11232 SPG3B spastic paraplegia 3B phenotype phenotype only Approved reserved reserved 1995-03-28 2011-02-10 6682 7825576 +HGNC:11235 SPG5B spastic paraplegia 5B (autosomal recessive) phenotype phenotype only Approved reserved reserved 1993-11-24 2011-02-10 6685 +HGNC:11237 SPG7 SPG7, paraplegin matrix AAA peptidase subunit protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "CAR|SPG5C" paraplegin CMAR "cell matrix adhesion regulator|spastic paraplegia 7 (pure and complicated autosomal recessive)" AAA ATPases 413 1998-06-25 2016-02-26 2016-02-26 6687 ENSG00000197912 OTTHUMG00000138046 uc002fnj.4 Y16610 NM_003119 "CCDS10977|CCDS10978" Q9UQ90 "9635427|9634528" MGI:2385906 RGD:727940 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ SPG7 602783 119829 M41.006 +HGNC:11239 SPG9 spastic paraplegia 9 (autosomal dominant) phenotype phenotype only Approved 10q23.2-q24.2 10q23.2-q24.2 1999-04-28 1999-09-27 9193 9973297 +HGNC:11226 SPG11 spastic paraplegia 11 (autosomal recessive) protein-coding gene gene with protein product Approved 15q21.1 15q21.1 FLJ21439 spatacsin KIAA1840 KIAA1840 1999-10-08 2015-08-26 80208 ENSG00000104133 OTTHUMG00000131199 uc001ztx.4 XM_017022634 "CCDS10112|CCDS53939" Q96JI7 "10408536|17322883" MGI:2444989 RGD:1562529 SPG11 610844 119807 +HGNC:13730 SPG14 spastic paraplegia 14 (autosomal recessive) phenotype phenotype only Approved 3q27-q28 03q27-q28 2001-06-25 2005-10-14 57309 10877981 605229 180294 +HGNC:14260 SPG16 spastic paraplegia 16 (complicated, X-linked recessive) phenotype phenotype only Approved Xq11.2 Xq11.2 2000-12-15 2011-02-10 57760 "10982473|10982474" 300266 180322 +HGNC:18009 SPG18 spastic paraplegia 18 (autosomal dominant) phenotype phenotype only Approved reserved reserved 2002-01-16 2012-11-23 140906 +HGNC:16706 SPG19 spastic paraplegia 19 (autosomal dominant) phenotype phenotype only Approved 9q33-q34 09q33-q34 2002-01-17 2011-02-10 140907 12112072 607152 180213 +HGNC:18514 SPG20 spastic paraplegia 20 (Troyer syndrome) protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "KIAA0610|TAHCCP1" spartin 2003-01-20 2007-04-23 2016-10-05 23111 ENSG00000133104 OTTHUMG00000016730 uc001uvq.4 AB011182 XM_005266315 CCDS9356 Q8N0X7 "6022528|12134148" MGI:2139806 RGD:1305900 SPG20 607111 119811 +HGNC:39933 SPG20-AS1 SPG20 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q13.3 13q13.3 "C13orf43|SPG20OS" "chromosome 13 open reading frame 43|SPG20 opposite strand" 2011-04-12 2014-10-03 2014-10-03 2014-11-19 100507135 ENSG00000120664 OTTHUMG00000016732 NR_045180 P0CW21 +HGNC:20373 SPG21 spastic paraplegia 21 (autosomal recessive, Mast syndrome) protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "ACP33|GL010|BM-019|MAST" maspardin 2004-04-30 2007-04-23 2015-02-16 51324 ENSG00000090487 OTTHUMG00000133098 uc002aoe.5 AF208861 NM_016630 "CCDS10198|CCDS45279" Q9NZD8 "11113139|14564668" MGI:106403 RGD:1359141 SPG21 608181 119815 +HGNC:21340 SPG23 spastic paraplegia 23 (autosomal recessive) phenotype phenotype only Approved 1q24-q32 01q24-q32 2003-06-10 2011-02-10 353293 14681889 270750 180301 +HGNC:22993 SPG24 spastic paraplegia 24 (autosomal recessive) phenotype phenotype only Approved 13q14 13q14 2003-08-13 2011-02-10 338090 12499481 607584 180270 +HGNC:25855 SPG25 spastic paraplegia 25 (autosomal recessive, with disc herniation) phenotype phenotype only Approved 6q23-q24.1 06q23-q24.1 2004-06-15 2011-02-10 387583 12070243 608220 180307 +HGNC:26071 SPG27 spastic paraplegia 27 (autosomal recessive) phenotype phenotype only Approved 10q22.1-q24.1 10q22.1-q24.1 2004-06-17 2008-07-04 414886 "15455396|16511635" 609041 180316 +HGNC:30161 SPG29 spastic paraplegia 29 (autosomal dominant) phenotype phenotype only Approved 1p31.1-p21.1 01p31.1-p21.1 2005-09-29 2008-07-04 619379 16130112 609727 180232 +HGNC:32314 SPG32 spastic paraplegia 32 (autosomal recessive) phenotype phenotype only Approved 14q12-q21 14q12-q21 SPG29 2006-07-03 2007-06-04 724107 17515546 611252 180318 +HGNC:32944 SPG34 spastic paraplegia 34 (autosomal dominant) phenotype phenotype only Approved reserved reserved 2006-07-04 2006-07-05 2011-02-10 724110 300750 180324 +HGNC:33240 SPG36 spastic paraplegia 36 (autosomal dominant) phenotype phenotype only Approved 12q23-q24 12q23-q24 2007-01-08 2008-05-14 791228 613096 325673 +HGNC:33472 SPG37 spastic paraplegia 37 (autosomal dominant) phenotype phenotype only Approved 8p21.2-q13.3 08p21.2-q13.3 2007-05-15 2007-10-10 100049159 17605047 611945 180240 +HGNC:33485 SPG38 spastic paraplegia 38 (autosomal dominant, Silver syndrome) phenotype phenotype only Approved 4p16-p15 04p16-p15 2007-06-07 2008-07-04 100049707 18401025 612335 180245 +HGNC:34382 SPG41 spastic paraplegia 41 (autosomal dominant) phenotype phenotype only Approved 11p14.1-p11.2 11p14.1-p11.2 2008-07-07 2011-02-10 100359402 18364116 613364 325671 +HGNC:35431 SPG45 spastic paraplegia 45 (autosomal recessive) phenotype phenotype only Approved 10q24.3-q25.1 10q24.3-q25.1 2009-01-06 2009-11-04 100322879 19415352 +HGNC:44625 SPG56 spastic paraplegia 56 (autosomal dominant) phenotype phenotype only Approved reserved reserved 2012-11-21 2012-11-21 +HGNC:16957 SPHAR S-phase response (cyclin related) protein-coding gene gene with protein product Approved 1q42.13 01q42.13 2009-03-11 2014-11-19 10638 ENSG00000213029 OTTHUMG00000058947 uc001htk.5 BC070287 NM_006542 CCDS1576 Q15513 7799938 SPHAR +HGNC:11240 SPHK1 sphingosine kinase 1 protein-coding gene gene with protein product Approved 17q25.2 17q25.2 SPHK 1999-02-01 2015-08-26 8877 ENSG00000176170 OTTHUMG00000180177 uc002jrj.3 BC030553 "NM_182965|NM_021972" "CCDS11744|CCDS45785|CCDS59297" Q9NYA1 9726979 MGI:1316649 RGD:620048 SPHK1 603730 objectId:2204 +HGNC:18859 SPHK2 sphingosine kinase 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 2002-07-05 2014-11-18 56848 ENSG00000063176 OTTHUMG00000183318 uc002pjr.4 AF245447 XM_017027008 "CCDS12727|CCDS59404|CCDS59405|CCDS74414" Q9NRA0 "10751414|17895250" MGI:1861380 RGD:1307757 SPHK2 607092 objectId:2205 +HGNC:30619 SPHKAP SPHK1 interactor, AKAP domain containing protein-coding gene gene with protein product Approved 2q36.3 02q36.3 SKIP sphingosine kinase type 1-interacting protein A-kinase anchoring proteins 396 2007-12-06 2014-11-19 80309 ENSG00000153820 OTTHUMG00000153584 uc002vpp.3 NM_030623 "CCDS33389|CCDS46537" Q2M3C7 "12080051|11214970" MGI:1924879 RGD:1311951 SPHKAP 611646 +HGNC:11241 SPI1 Spi-1 proto-oncogene protein-coding gene gene with protein product Approved 11p11.2 11p11.2 "PU.1|SPI-A|OF|SFPI1|SPI-1" "hematopoietic transcription factor PU.1|31 kDa transforming protein" spleen focus forming virus (SFFV) proviral integration oncogene ETS transcription factor family 534 1988-07-04 2014-06-25 2016-10-05 6688 ENSG00000066336 OTTHUMG00000150150 uc001nfc.2 X52056 NM_003120 "CCDS7933|CCDS44591" P17947 1693183 MGI:98282 RGD:1359607 SPI1 165170 +HGNC:11242 SPIB Spi-B transcription factor protein-coding gene gene with protein product Approved 19q13.33 19q13.33 SPI-B Spi-B transcription factor (Spi-1/PU.1 related) ETS transcription factor family 534 1994-12-15 2016-03-11 2016-03-11 6689 ENSG00000269404 OTTHUMG00000183039 uc002psd.4 NM_003121 "CCDS33080|CCDS58674|CCDS59412" Q01892 1406622 MGI:892986 RGD:1565899 SPIB 606802 239862 +HGNC:29549 SPIC Spi-C transcription factor protein-coding gene gene with protein product Approved 12q23.2 12q23.2 "MGC40611|SPI-C" Spi-C transcription factor (Spi-1/PU.1 related) ETS transcription factor family 534 2004-03-18 2016-03-11 2016-03-11 121599 ENSG00000166211 OTTHUMG00000170273 uc001tid.3 AF518404 NM_152323 CCDS9082 Q8N5J4 12459275 MGI:1341168 RGD:1306272 SPIC 612568 +HGNC:25083 SPICE1 spindle and centriole associated protein 1 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 SPICE spindle and centriole protein CCDC52 coiled-coil domain containing 52 2006-01-02 2010-09-01 2010-09-01 2014-11-19 152185 ENSG00000163611 OTTHUMG00000159261 uc003eag.5 AY099107 NM_144718 CCDS2973 Q8N0Z3 20736305 MGI:1196252 RGD:1310729 SPICE1 613447 +HGNC:28971 SPIDR scaffolding protein involved in DNA repair protein-coding gene gene with protein product Approved 8q11.21 08q11.21 KIAA0146 KIAA0146 2005-09-01 2013-07-02 2013-07-02 2014-11-19 23514 ENSG00000164808 OTTHUMG00000164176 AK055680 NM_001080394 "CCDS43737|CCDS64890|CCDS64891" Q14159 "8590280|23509288" MGI:1924834 RGD:1566036 615384 +HGNC:11243 SPIN1 spindlin 1 protein-coding gene gene with protein product Approved 9q22.1 09q22.1 TDRD24 SPIN spindlin "Tudor domain containing|Spindlin family" "780|1089" 1999-08-06 2007-01-03 2007-01-03 2015-08-11 10927 ENSG00000106723 OTTHUMG00000020168 uc004apy.4 AF317228 NM_006717 CCDS43843 Q9Y657 16098913 MGI:109242 RGD:1306210 SPIN1 609936 +HGNC:20694 SPIN2A spindlin family member 2A protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "DXF34|TDRD25" SPIN2 "spindlin family, member 2|spindlin family, member 2A" "Tudor domain containing|Spindlin family" "780|1089" 2004-01-26 2006-12-05 2015-11-18 2016-10-05 54466 ENSG00000147059 OTTHUMG00000022705 uc064zow.1 Y09858 NM_019003 CCDS35312 Q99865 9271673 "MGI:1922101|MGI:3645574|MGI:3645924|MGI:3647272|MGI:3650966|MGI:3705652|MGI:3780958|MGI:3781026|MGI:3781070|MGI:3781932|MGI:3805546|MGI:5434821|MGI:5434847|MGI:5434992" RGD:1584901 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SPIN2A SPIN2A 300621 +HGNC:33147 SPIN2B spindlin family member 2B protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "SPIN-2|TDRD26" spindlin family, member 2B "Tudor domain containing|Spindlin family" "780|1089" 2006-12-05 2015-11-18 2016-10-05 474343 ENSG00000186787 OTTHUMG00000021680 uc004duz.5 AF356353 NM_001006681 "CCDS35311|CCDS65274" Q9BPZ2 12145692 "MGI:1922101|MGI:3645574|MGI:3645924|MGI:3647272|MGI:3650966|MGI:3705652|MGI:3780958|MGI:3781026|MGI:3781070|MGI:3781932|MGI:3805546|MGI:5434821|MGI:5434847|MGI:5434992" SPIN2B 300517 +HGNC:27272 SPIN3 spindlin family member 3 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 TDRD27 spindlin family, member 3 "Tudor domain containing|Spindlin family" "780|1089" 2004-08-16 2015-11-18 2016-10-05 169981 ENSG00000204271 OTTHUMG00000021677 uc004dux.2 AL832091 XM_093024 CCDS43963 Q5JUX0 SPIN3 +HGNC:27040 SPIN4 spindlin family member 4 protein-coding gene gene with protein product Approved Xq11.1 Xq11.1 "FLJ44984|TDRD28" spindlin family, member 4 "Tudor domain containing|Spindlin family" "780|1089" 2007-07-24 2015-11-18 2015-11-18 139886 ENSG00000186767 OTTHUMG00000021696 uc004dvf.3 AK126931 NM_001012968 CCDS43964 Q56A73 12477932 MGI:2444925 RGD:1564004 SPIN4 +HGNC:41177 SPIN4-AS1 SPIN4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq11.1 Xq11.1 SPIN4 antisense RNA 1 (non-protein coding) 2011-08-10 2012-08-15 2014-11-19 100874033 ENSG00000233661 OTTHUMG00000021697 uc064zpd.1 +HGNC:11244 SPINK1 serine peptidase inhibitor, Kazal type 1 protein-coding gene gene with protein product Approved 5q32 05q32 "Spink3|PCTT|PSTI|TATI" serine protease inhibitor, Kazal type 1 Serine peptidase inhibitors, Kazal type 740 1988-06-27 2005-08-17 2015-03-02 6690 ENSG00000164266 OTTHUMG00000129730 uc003los.3 NM_003122 CCDS4286 P00995 MGI:106202 RGD:3749 SPINK1 167790 119834 I01.011 +HGNC:11245 SPINK2 serine peptidase inhibitor, Kazal type 2 protein-coding gene gene with protein product Approved 4q12 04q12 HUSI-II acrosin-trypsin inhibitor "serine protease inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)|serine peptidase inhibitor, Kazal type 2 (acrosin-trypsin inhibitor)" Serine peptidase inhibitors, Kazal type 740 1993-12-01 2016-03-01 2016-03-01 6691 ENSG00000128040 OTTHUMG00000128769 uc003hcg.3 BC022514 NM_021114 "CCDS3508|CCDS63971|CCDS63972|CCDS75128" P20155 8428671 MGI:1917232 RGD:1302956 SPINK2 605753 I01.012 +HGNC:16646 SPINK4 serine peptidase inhibitor, Kazal type 4 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "PEC-60|MGC133107" serine protease inhibitor, Kazal type 4 Serine peptidase inhibitors, Kazal type 740 2001-09-21 2005-08-17 2014-11-18 27290 ENSG00000122711 OTTHUMG00000019762 uc003zsh.4 AF048700 NM_014471 CCDS6536 O60575 "1400298|17333166" MGI:1341848 RGD:1303188 SPINK4 613929 I01.970 +HGNC:15464 SPINK5 serine peptidase inhibitor, Kazal type 5 protein-coding gene gene with protein product Approved 5q32 05q32 "VAKTI|LEKTI|LETKI|NETS|NS|FLJ21544|FLJ97536|FLJ97596|FLJ99794|DKFZp686K19184" lymphoepithelial Kazal-type-related inhibitor serine protease inhibitor, Kazal type 5 Serine peptidase inhibitors, Kazal type 740 2001-03-30 2005-08-17 2016-10-12 11005 ENSG00000133710 OTTHUMG00000134305 uc003lox.3 AJ228139 NM_001127698 "CCDS43382|CCDS47300|CCDS47301" Q9NQ38 10419450 MGI:1919682 RGD:1306540 "SPINK5base: Mutation registry for Netherton syndrome|http://structure.bmc.lu.se/idbase/SPINK5base/|LRG_110|http://www.lrg-sequence.org/LRG/LRG_110" SPINK5 605010 119840 LI01-004 +HGNC:29486 SPINK6 serine peptidase inhibitor, Kazal type 6 protein-coding gene gene with protein product Approved 5q32 05q32 "MGC21394|UNQ844|BUSI2" protease inhibitor H serine protease inhibitor, Kazal type 6 Serine peptidase inhibitors, Kazal type 740 2004-11-30 2005-08-17 2015-08-26 404203 ENSG00000178172 OTTHUMG00000163425 uc021yff.2 AY358716 NM_205841 CCDS34268 Q6UWN8 15060002 MGI:3648654 RGD:1303338 SPINK6 615868 I01.015 +HGNC:24643 SPINK7 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding gene gene with protein product Approved 5q32 05q32 "ECG2|ECRG2" esophagus cancer related gene 2 Serine peptidase inhibitors, Kazal type 740 2006-02-20 2015-08-26 84651 ENSG00000145879 OTTHUMG00000163522 uc003lpd.4 NM_032566 CCDS4289 P58062 "12646258|12970870" MGI:3644691 RGD:1303077 SPINK7 I01.057 +HGNC:33160 SPINK8 serine peptidase inhibitor, Kazal type 8 (putative) protein-coding gene gene with protein product Approved 3p21.31 03p21.31 Serine peptidase inhibitors, Kazal type 740 2006-10-27 2014-11-19 646424 ENSG00000229453 OTTHUMG00000156832 uc003csq.2 NM_001080525 CCDS46822 P0C7L1 16930550 MGI:1925959 RGD:1307150 SPINK8 +HGNC:32951 SPINK9 serine peptidase inhibitor, Kazal type 9 protein-coding gene gene with protein product Approved 5q32 05q32 Serine peptidase inhibitors, Kazal type 740 2006-11-06 2014-11-19 643394 ENSG00000204909 OTTHUMG00000163431 uc003lpe.1 AY396740 NM_001040433 CCDS34269 Q5DT21 RGD:1596746 SPINK9 613511 I01.054 +HGNC:27200 SPINK13 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding gene gene with protein product Approved 5q32 05q32 "SPINK5L3|LiESP6|HESPINTOR|MGC149260|HBVDNAPTP1" Hepatitis B Virus (HBV) DNA polymerase transactivated protein 1 Serine peptidase inhibitors, Kazal type 740 2010-03-31 2016-07-13 153218 ENSG00000214510 OTTHUMG00000163426 uc003lpc.4 NM_001040129.2 CCDS43383 Q1W4C9 23430248 MGI:3642511 RGD:1591057 SPINK13 615205 I01.060 +HGNC:33825 SPINK14 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding gene gene with protein product Approved 5q32 05q32 SPINK5L2 Serine peptidase inhibitors, Kazal type 740 2010-03-31 2015-08-26 408187 ENSG00000196800 OTTHUMG00000129732 uc031sls.2 NM_001001325 CCDS4288 Q6IE38 MGI:3646952 RGD:1303288 SPINK14 I01.975 +HGNC:11246 SPINT1 serine peptidase inhibitor, Kunitz type 1 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "HAI|MANSC2" serine protease inhibitor, Kunitz type 1 1988-07-18 2005-08-17 2016-10-05 6692 ENSG00000166145 OTTHUMG00000130068 uc001zna.4 NM_003710 "CCDS10067|CCDS45231" O43278 MGI:1338033 RGD:1303138 SPINT1 605123 +HGNC:11247 SPINT2 serine peptidase inhibitor, Kunitz type 2 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "Kop|HAI-2" placental bikunin serine protease inhibitor, Kunitz type, 2 1999-07-23 2016-06-24 2016-06-24 10653 ENSG00000167642 OTTHUMG00000181891 uc002ohr.2 U78095 NM_021102 "CCDS12510|CCDS54261" O43291 "9115294|9346890" MGI:1338031 RGD:735123 SPINT2 605124 178801 LI02-005 +HGNC:11248 SPINT3 serine peptidase inhibitor, Kunitz type 3 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 HKIB9 serine protease inhibitor, Kunitz type, 3 1999-07-23 2016-06-24 2016-06-24 10816 ENSG00000101446 OTTHUMG00000032585 uc010ghg.1 X77166 NM_006652 CCDS46608 P49223 21988899 MGI:3651470 RGD:1597746 SPINT3 613941 I02.969 +HGNC:16130 SPINT4 serine peptidase inhibitor, Kunitz type 4 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ601O1.1 C20orf137 "chromosome 20 open reading frame 137|serine peptidase inhibitor, Kunitz type 4" 2001-07-17 2005-10-25 2005-10-18 2014-11-19 391253 ENSG00000149651 OTTHUMG00000130153 uc002xpe.2 AY372174 XM_372869 CCDS33477 Q6UDR6 21988899 MGI:1925489 RGD:2319289 SPINT4 I02.975 +HGNC:16161 SPINT5P serine peptidase inhibitor, Kunitz type 5, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 dJ447F3.6 C20orf168 chromosome 20 open reading frame 168 2001-07-17 2012-08-22 2012-08-22 2014-03-12 140863 ENSG00000168630 OTTHUMG00000032611 AL050348 NG_033275 21988899 MGI:3651687 PGOHUM00000261993 +HGNC:30622 SPIRE1 spire type actin nucleation factor 1 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "spir-1|KIAA1135" "spire homolog 1 (Drosophila)|spire family actin nucleation factor 1|spire-type actin nucleation factor 1" 2004-04-28 2016-02-01 2016-02-01 56907 ENSG00000134278 OTTHUMG00000153940 uc010wzy.3 AL833817 XM_290818 "CCDS32790|CCDS45829|CCDS45830" Q08AE8 "10574461|11747823" MGI:1915416 RGD:1305892 SPIRE1 609216 +HGNC:30623 SPIRE2 spire type actin nucleation factor 2 protein-coding gene gene with protein product Approved 16q24 16q24 "spir-2|KIAA1832" "spire homolog 2 (Drosophila)|spire family actin nucleation factor 2|spire-type actin nucleation factor 2" 2004-04-28 2016-02-01 2016-02-01 84501 ENSG00000204991 OTTHUMG00000173039 uc002foz.2 AL834408 XM_047462 CCDS32516 Q8WWL2 11347906 MGI:2446256 RGD:1305837 SPIRE2 609217 +HGNC:11249 SPN sialophorin protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "LSN|CD43|GPL115" leukosialin sialophorin (gpL115, leukosialin, CD43) CD molecules 471 1988-08-31 2008-07-31 2016-07-19 6693 ENSG00000197471 OTTHUMG00000097765 uc002dtn.5 J04536 NM_001030288 CCDS10650 P16150 "2784859|2521952" MGI:98384 RGD:3750 SPN 182160 CD43 +HGNC:30621 SPNS1 sphingolipid transporter 1 (putative) protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "HSpin1|nrs|SPINL|PP2030|SPIN1|LAT" spinster homolog 1 (Drosophila) 2007-04-12 2016-05-27 2016-05-27 83985 ENSG00000169682 OTTHUMG00000131762 uc002dsa.3 BC006156 NM_032038 "CCDS10646|CCDS45452|CCDS45453|CCDS45454" Q9H2V7 "11340170|12815463" MGI:1920908 RGD:1305613 SPNS1 612583 +HGNC:26992 SPNS2 sphingolipid transporter 2 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 spinster homolog 2 (Drosophila) 2007-04-12 2016-05-27 2016-05-27 124976 ENSG00000183018 OTTHUMG00000177739 uc002fxx.3 BC041772 NM_001124758 CCDS42237 Q8IVW8 "12815463|26324848" MGI:2384936 RGD:2303312 SPNS2 612584 +HGNC:28433 SPNS3 sphingolipid transporter 3 (putative) protein-coding gene gene with protein product Approved 17p13.2 17p13.2 MGC29671 spinster homolog 3 (Drosophila) 2007-04-12 2016-05-27 2016-05-27 201305 ENSG00000182557 OTTHUMG00000177737 uc002fxt.4 NM_182538 CCDS11045 Q6ZMD2 17714910 MGI:1924827 RGD:1561884 SPNS3 611701 +HGNC:11250 SPO11 SPO11, initiator of meiotic double stranded breaks protein-coding gene gene with protein product Approved 20q13.31 20q13.31 "CT35|SPATA43|TOPVIA" "cancer/testis antigen 35|spermatogenesis associated 43" "SPO11, meiotic protein covalently bound to DSB (S. cerevisiae)-like|SPO11 meiotic protein covalently bound to DSB-like (S. cerevisiae)|SPO11 meiotic protein covalently bound to DSB homolog (S. cerevisiae)|SPO11 meiotic protein covalently bound to DSB" 1999-12-02 2016-04-29 2016-04-29 23626 ENSG00000054796 OTTHUMG00000032817 uc002xye.4 AF169385 NM_012444 "CCDS13456|CCDS13457" Q9Y5K1 "10534401|26995551" MGI:1349669 RGD:1306454 SPO11 605114 +HGNC:26338 SPOCD1 SPOC domain containing 1 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "FLJ25348|PPP1R146" protein phosphatase 1, regulatory subunit 146 Protein phosphatase 1 regulatory subunits 694 2004-08-27 2016-10-05 90853 ENSG00000134668 OTTHUMG00000003879 uc001bts.3 AK058077 NM_144569 "CCDS347|CCDS60066|CCDS72748" Q6ZMY3 12477932 MGI:3652045 RGD:1560989 SPOCD1 +HGNC:11251 SPOCK1 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 1 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 testican-1 "TIC1|SPOCK" sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) SPARC family 1278 1995-10-02 2005-11-04 2016-08-11 2016-08-11 6695 ENSG00000152377 OTTHUMG00000129157 uc003lbp.4 AF231124 NM_004598 CCDS4191 Q08629 9545645 MGI:105371 RGD:1311496 SPOCK1 602264 I31.006 +HGNC:13564 SPOCK2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "KIAA0275|testican-2" sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 2 SPARC family 1278 2003-01-24 2016-08-11 2016-08-11 9806 ENSG00000107742 OTTHUMG00000018430 uc001jsp.4 AJ001453 XM_011540404 "CCDS7313|CCDS44431" Q92563 10386950 MGI:1891351 RGD:1308568 SPOCK2 607988 I31.954 +HGNC:13565 SPOCK3 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 testican-3 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 3 SPARC family 1278 2003-01-24 2016-08-11 2016-08-11 50859 ENSG00000196104 OTTHUMG00000161190 uc063auj.1 AJ001454 XM_017008257 "CCDS34095|CCDS54817|CCDS56343|CCDS56344|CCDS56346|CCDS56347|CCDS58931|CCDS75207" Q9BQ16 11751414 MGI:1920152 RGD:1305672 SPOCK3 607989 I31.007 +HGNC:11252 SPON1 spondin 1 protein-coding gene gene with protein product Approved 11p15.2 11p15.2 "KIAA0762|f-spondin" spondin 1, (f-spondin) extracellular matrix protein 1999-06-18 2016-01-12 2016-01-12 10418 ENSG00000262655 OTTHUMG00000181576 uc031xfv.2 AB018305 NM_145584 CCDS73262 Q9HCB6 9872452 MGI:2385287 RGD:619918 SPON1 604989 +HGNC:11253 SPON2 spondin 2 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 DIL1 "Mindin|M-spondin" spondin 2, extracellular matrix protein 1999-06-18 2016-01-12 2016-01-12 10417 ENSG00000159674 OTTHUMG00000089002 uc021xkj.2 AB027466 NM_012445 CCDS3347 Q9BUD6 "10512675|15094111" MGI:1923724 RGD:708584 SPON2 605918 +HGNC:11254 SPOP speckle type BTB/POZ protein protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "TEF2|BTBD32" speckle-type POZ protein BTB domain containing 861 1998-09-07 2016-02-10 2016-02-10 8405 ENSG00000121067 OTTHUMG00000161496 uc002ipf.4 AJ000644 NM_003563 CCDS11551 O43791 9414087 MGI:1343085 RGD:1311613 SPOP 602650 +HGNC:27934 SPOPL speckle type BTB/POZ protein like protein-coding gene gene with protein product Approved 2q22.1 02q22.1 BTBD33 "HIB homolog 2|roadkill homolog 2" speckle-type POZ protein-like BTB domain containing 861 2007-10-25 2016-02-10 2016-02-10 339745 ENSG00000144228 OTTHUMG00000153635 uc002tvh.5 NM_001001664 CCDS33298 Q6IQ16 22632832 MGI:1924107 RGD:1305847 SPOPL +HGNC:26933 SPOUT1 SPOUT domain containing methyltransferase 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "HSPC109|CENP-32" centromere protein 32 C9orf114 chromosome 9 open reading frame 114 SPOUT methyltranferase domain containing 1294 2004-03-25 2016-06-30 2016-06-30 2016-06-30 51490 ENSG00000198917 OTTHUMG00000020762 uc004bwd.3 NM_016390 CCDS6913 Q5T280 "20813266|25657325" MGI:106544 RGD:1563514 2.1.1.- +HGNC:11255 SPP1 secreted phosphoprotein 1 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 "BSPI|ETA-1" early T-lymphocyte activation 1 "BNSP|OPN" "osteopontin|bone sialoprotein I" "Endogenous ligands|SIBLING family" "542|1279" 1989-03-06 2008-07-31 2015-08-26 6696 ENSG00000118785 OTTHUMG00000130599 uc003hrc.4 XM_017008564 "CCDS3626|CCDS34027|CCDS43250" P10451 1575754 MGI:98389 RGD:3752 SPP1 166490 369311 +HGNC:11256 SPP2 secreted phosphoprotein 2 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 SPP24 "secreted phosphoprotein 2, 24kD|secreted phosphoprotein 2, 24kDa" 1996-08-21 2015-11-09 2015-11-09 6694 ENSG00000072080 OTTHUMG00000059208 uc061twv.1 NM_006944 CCDS2511 Q13103 9533032 MGI:1922646 RGD:708488 SPP2 602637 +HGNC:30227 SPPL2A signal peptide peptidase like 2A protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "IMP3|PSL2" "intramembrane protease 3|presenilin-like protein 2" 2012-02-21 2014-11-19 84888 ENSG00000138600 OTTHUMG00000131647 uc001zyv.4 NM_032802 CCDS10138 Q8TCT8 "12077416|12139484" MGI:1913802 RGD:1563001 SPPL2A 608238 +HGNC:30627 SPPL2B signal peptide peptidase like 2B protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "IMP4|PSL1|KIAA1532" intramembrane protease 4 2012-02-21 2012-02-21 56928 ENSG00000005206 OTTHUMG00000180443 uc032hjo.2 NM_020172 "CCDS74252|CCDS74253" Q8TCT7 10819331 MGI:1920468 RGD:1308556 608239 +HGNC:28902 SPPL2C signal peptide peptidase like 2C protein-coding gene gene with protein product Approved 17q21.31 17q21.31 IMP5 intramembrane protease 5 2012-02-21 2014-11-19 162540 ENSG00000185294 OTTHUMG00000178247 uc010wka.3 NM_175882 CCDS32673 Q8IUH8 12139484 MGI:3045264 RGD:1560562 608284 +HGNC:30424 SPPL3 signal peptide peptidase like 3 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "IMP2|PSL4|MGC90402|MGC126674|MGC126676|DKFZP586C1324" "intramembrane protease 2|presenilin-like protein 4" 2012-02-21 2014-11-19 121665 ENSG00000157837 OTTHUMG00000169232 uc001tzd.4 NM_139015 CCDS9208 Q8TCT6 12139484 MGI:1891433 RGD:1562826 608240 +HGNC:11257 SPR sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) protein-coding gene gene with protein product Approved 2p13.2 02p13.2 SDR38C1 short chain dehydrogenase/reductase family 38C, member 1 Short chain dehydrogenase/reductase superfamily 743 1991-12-05 2016-10-05 6697 ENSG00000116096 OTTHUMG00000129777 uc002sik.3 NM_003124 CCDS1920 P35270 "1883349|19027726" MGI:103078 RGD:3753 BIOMBD|http://www.biopku.org/home/biomdb.asp SPR 182125 119844 1.1.1.153 +HGNC:20249 SPRED1 sprouty related EVH1 domain containing 1 protein-coding gene gene with protein product Approved 15q14 15q14 "FLJ33903|PPP1R147" protein phosphatase 1, regulatory subunit 147 Protein phosphatase 1 regulatory subunits 694 2003-01-24 2016-04-28 2016-04-28 161742 ENSG00000166068 OTTHUMG00000172377 uc001zka.5 AK091222 XM_005254202 CCDS32193 Q7Z699 MGI:2150016 RGD:1308735 SPRED1 609291 159367 +HGNC:17722 SPRED2 sprouty related EVH1 domain containing 2 protein-coding gene gene with protein product Approved 2p14 02p14 "Spred-2|FLJ21897|FLJ31917" 2003-06-02 2016-04-28 2016-04-28 200734 ENSG00000198369 OTTHUMG00000152737 uc010fcw.4 AF052178 XM_017003576 "CCDS33211|CCDS46308" Q7Z698 MGI:2150019 RGD:1309304 SPRED2 609292 +HGNC:31041 SPRED3 sprouty related EVH1 domain containing 3 protein-coding gene gene with protein product Approved 19q13 19q13 2004-01-22 2016-04-28 2016-04-28 399473 ENSG00000188766 OTTHUMG00000182082 uc002oim.5 XM_351191 CCDS42560 Q2MJR0 14618415 MGI:2142186 RGD:1311713 SPRED3 609293 +HGNC:16871 SPRN shadow of prion protein homolog (zebrafish) protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "Shadoo|Sprn|bA108K14.1|FLJ41197" hypothetical protein BC004409 2005-08-15 2014-11-18 503542 ENSG00000203772 OTTHUMG00000019324 uc001lnf.5 NM_001012508 CCDS53589 Q5BIV9 14527721 MGI:3582583 RGD:1561845 SPRN 610447 +HGNC:37819 SPRNP1 shadow of prion protein homolog (zebrafish) pseudogene 1 pseudogene pseudogene Approved 10q26.3 10q26.3 FLJ44653 2010-06-30 2010-06-30 399833 AK126615 NR_033789 20206252 +HGNC:11259 SPRR1A small proline rich protein 1A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 cornifin-A small proline-rich protein 1A 1993-01-20 2016-01-25 2016-10-05 6698 ENSG00000169474 OTTHUMG00000014404 uc057lan.1 L05187 NM_005987 CCDS1032 P35321 8325635 MGI:106660 SPRR1A 182265 +HGNC:11260 SPRR1B small proline rich protein 1B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 GADD33 cornifin SPRR1 small proline-rich protein 1B 1993-01-20 2016-01-25 2016-10-05 6699 ENSG00000169469 OTTHUMG00000013869 uc001fba.4 M84757 NM_003125 CCDS30863 P22528 "8325635|1438308" MGI:106659 RGD:1593163 SPRR1B 182266 +HGNC:11261 SPRR2A small proline rich protein 2A protein-coding gene gene with protein product Approved 1q21.3 01q21.3 small proline-rich protein 2A 1993-01-20 2016-01-25 2016-10-05 6700 ENSG00000241794 OTTHUMG00000014395 uc001fbd.4 X53064 NM_005988 CCDS1034 P35326 8325635 SPRR2A 182267 +HGNC:11262 SPRR2B small proline rich protein 2B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 small proline-rich protein 2B 1993-01-20 2016-01-25 2016-10-05 6701 ENSG00000196805 OTTHUMG00000013863 uc057lau.1 AF333952 XM_017002174 CCDS30865 P35325 8325635 SPRR2B 182268 +HGNC:11263 SPRR2C small proline rich protein 2C (pseudogene) pseudogene pseudogene Approved 1q21.3 01q21.3 "small proline-rich protein 2C|small proline-rich protein 2C (pseudogene)" 1993-01-20 2016-01-25 2016-10-05 6702 ENSG00000229035 OTTHUMG00000013864 M21539 NM_006518 "8325635|3133554" 182269 +HGNC:11264 SPRR2D small proline rich protein 2D protein-coding gene gene with protein product Approved 1q21.3 01q21.3 small proline-rich protein 2D 2004-10-28 2016-01-25 2016-10-05 6703 ENSG00000163216 OTTHUMG00000014396 uc057lar.1 AF333954 XM_017002175 CCDS30864 P22532 8325635 SPRR2D +HGNC:11265 SPRR2E small proline rich protein 2E protein-coding gene gene with protein product Approved 1q21.3 01q21.3 small proline-rich protein 2E 2004-10-28 2016-01-25 2016-10-05 6704 ENSG00000203785 OTTHUMG00000014397 uc057lav.1 AF333955 NM_001024209 CCDS30866 P22531 8325635 SPRR2E +HGNC:11266 SPRR2F small proline rich protein 2F protein-coding gene gene with protein product Approved 1q21-q22 01q21-q22 small proline-rich protein 2F 2004-10-22 2016-01-25 2016-01-25 6705 ENSG00000244094 OTTHUMG00000014398 uc001fbi.4 AF333956 XM_017002176 CCDS30867 Q96RM1 "8325635|11279051" RGD:7654558 SPRR2F +HGNC:11267 SPRR2G small proline rich protein 2G protein-coding gene gene with protein product Approved 1q21-q22 01q21-q22 small proline-rich protein 2G 2004-10-22 2016-01-25 2016-01-25 6706 ENSG00000159516 OTTHUMG00000014399 uc009wod.3 AF333957 XM_017002177 CCDS30868 Q9BYE4 "8325635|11279051" RGD:7690861 SPRR2G +HGNC:11268 SPRR3 small proline rich protein 3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 small proline-rich protein 3 1993-01-20 2016-01-25 2016-10-05 6707 ENSG00000163209 OTTHUMG00000013872 uc001fax.5 AY118269 NM_005416 CCDS1033 Q9UBC9 8325635 MGI:1330237 RGD:1309589 SPRR3 182271 +HGNC:23173 SPRR4 small proline rich protein 4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 small proline-rich protein 4 2003-09-26 2016-01-25 2016-01-25 163778 ENSG00000184148 OTTHUMG00000012450 uc001fav.2 AF335109 NM_173080 CCDS1031 Q96PI1 "11719550|11279051" MGI:2654508 RGD:2324572 SPRR4 616363 +HGNC:25356 SPRTN SprT-like N-terminal domain protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "DKFZP547N043|Spartan|DVC1" "SprT-like domain at the N terminus|DNA damage-targeting VCP (p97) adaptor" C1orf124 chromosome 1 open reading frame 124 2005-06-23 2012-06-18 2012-06-18 2016-10-05 83932 ENSG00000010072 OTTHUMG00000038022 uc001hur.5 AL512744 NM_032018 "CCDS1594|CCDS31054|CCDS58066" Q9H040 22681887 MGI:2685351 RGD:1559496 SPRTN 616086 444788 +HGNC:11269 SPRY1 sprouty RTK signaling antagonist 1 protein-coding gene gene with protein product Approved 4q28.1 04q28.1 hSPRY1 "sprouty (Drosophila) homolog 1 (antagonist of FGF signaling)|sprouty homolog 1, antagonist of FGF signaling (Drosophila)" 1998-11-09 2015-06-26 2016-10-05 10252 ENSG00000164056 OTTHUMG00000133071 uc031sgy.1 AF041037 XM_017007635 CCDS3731 O43609 "9458049|15962011" MGI:1345139 RGD:1309293 SPRY1 602465 +HGNC:11270 SPRY2 sprouty RTK signaling antagonist 2 protein-coding gene gene with protein product Approved 13q31.1 13q31.1 hSPRY2 "sprouty (Drosophila) homolog 2|sprouty homolog 2 (Drosophila)" 1998-11-09 2015-06-26 2015-08-26 10253 ENSG00000136158 OTTHUMG00000017140 uc001vlj.4 AF039843 NM_001318536 CCDS9463 O43597 9458049 MGI:1345138 RGD:1311472 SPRY2 602466 450294 +HGNC:11271 SPRY3 sprouty RTK signaling antagonist 3 protein-coding gene gene with protein product Approved Xq28 and Yq12 Xq28 and Yq12 HSPRY3 antagonist of FGF signaling "sprouty (Drosophila) homolog 2|sprouty homolog 3 (Drosophila)" Pseudoautosomal region 2 716 1998-11-09 2015-06-26 2015-08-26 10251 ENSG00000168939 OTTHUMG00000022675 uc004fxi.2 AF041038 NM_005840 CCDS14769 O43610 9458049 MGI:1345188 RGD:1562172 SPRY3 300531 +HGNC:15533 SPRY4 sprouty RTK signaling antagonist 4 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 sprouty homolog 4 (Drosophila) 2002-01-22 2015-06-26 2015-08-26 81848 ENSG00000187678 OTTHUMG00000129663 uc003lml.3 AF227516 XM_011537685 "CCDS4274|CCDS47296" Q9C004 16465403 MGI:1345144 RGD:1305324 SPRY4 607984 353749 +HGNC:42394 SPRY4-IT1 SPRY4 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 5q31.3 05q31.3 SPRIGHTLY SPRY4 intronic transcript 1 (non-protein coding) Long non-coding RNAs 788 2011-07-07 2015-02-25 2016-02-03 100642175 ENSG00000281881 OTTHUMG00000189512 uc063iel.1 AK024556 NR_131221 "21558391|26829028" spry4-it1 +HGNC:25920 SPRYD3 SPRY domain containing 3 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 FLJ14800 2006-01-25 2006-02-02 2015-07-22 84926 ENSG00000167778 OTTHUMG00000170101 uc001sbt.2 AK074694 NM_032840 CCDS8845 Q8NCJ5 14702039 MGI:2446175 RGD:1561500 SPRYD3 +HGNC:27468 SPRYD4 SPRY domain containing 4 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 DKFZp686N0877 2006-03-01 2015-07-22 283377 ENSG00000176422 OTTHUMG00000187405 uc001sli.5 AL832247 NM_207344 CCDS8920 Q8WW59 MGI:1913951 RGD:1306649 SPRYD4 +HGNC:14297 SPRYD7 SPRY domain containing 7 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 CLLD6 C13orf1 chromosome 13 open reading frame 1 2001-01-26 2011-05-25 2011-05-25 2016-10-05 57213 ENSG00000123178 OTTHUMG00000016924 uc001vdl.3 AF055016 NM_020456 "CCDS9422|CCDS45046" Q5W111 "11306461|11771308" MGI:1913924 RGD:1306437 SPRYD7 607866 +HGNC:52300 SPRYD7P1 SPRY domain containing 7 pseudogene 1 pseudogene pseudogene Approved Xq21.1 Xq21.1 2016-06-30 2016-06-30 100130843 ENSG00000234404 OTTHUMG00000013135 NG_022675 PGOHUM00000305164 +HGNC:30628 SPSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 SSB-1 2005-09-01 2014-11-19 80176 ENSG00000171621 OTTHUMG00000001279 uc010oae.3 NM_025106 CCDS102 Q96BD6 "15713673|12076535" MGI:1921896 RGD:1309319 SPSB1 611657 +HGNC:29522 SPSB2 splA/ryanodine receptor domain and SOCS box containing 2 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "GRCC9|SSB-2" 2005-09-01 2014-11-19 84727 ENSG00000111671 OTTHUMG00000156665 uc001qrm.4 AF403027 NM_032641 CCDS8567 Q99619 "8723724|12076535" MGI:1315199 RGD:1310854 SPSB2 611658 +HGNC:30629 SPSB3 splA/ryanodine receptor domain and SOCS box containing 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 SSB-3 C16orf31 chromosome 16 open reading frame 31 2005-09-01 2014-11-19 90864 ENSG00000162032 OTTHUMG00000176746 uc002cmu.4 NM_080861 CCDS32365 Q6PJ21 12076535 MGI:1891471 RGD:1310936 SPSB3 611659 +HGNC:30630 SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding gene gene with protein product Approved 3q23 03q23 SSB-4 2005-09-01 2014-11-19 92369 ENSG00000175093 OTTHUMG00000160223 uc003ett.4 NM_080862 CCDS3115 Q96A44 12076535 MGI:2183445 RGD:1562307 SPSB4 611660 +HGNC:11272 SPTA1 spectrin alpha, erythrocytic 1 protein-coding gene gene with protein product Approved 1q23.1 01q23.1 EL2 elliptocytosis 2 spectrin, alpha, erythrocytic 1 (elliptocytosis 2) "EF-hand domain containing|Spectrins" "863|1113" 2001-06-22 2016-01-12 2016-10-05 6708 ENSG00000163554 OTTHUMG00000019636 uc001fst.2 M61877 NM_003126 CCDS41423 P02549 MGI:98385 RGD:1305194 SPTA1 182860 119846 +HGNC:11273 SPTAN1 spectrin alpha, non-erythrocytic 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 alpha-fodrin "EF-hand domain containing|Spectrins" "863|1113" 2001-06-22 2016-01-12 2016-01-12 6709 ENSG00000197694 OTTHUMG00000020754 uc004bvl.5 M19725 NM_003127 "CCDS6905|CCDS48036|CCDS75914" Q13813 3336352 MGI:98386 RGD:621714 SPTAN1 182810 235187 +HGNC:11274 SPTB spectrin beta, erythrocytic protein-coding gene gene with protein product Approved 14q23.3 14q23.3 spherocytosis, clinical type I "Pleckstrin homology domain containing|Spectrins" "682|1113" 2001-06-22 2016-01-12 2016-02-26 6710 ENSG00000070182 OTTHUMG00000171550 uc001xhs.3 XM_005268023 "CCDS32099|CCDS32100" P11277 2209094 MGI:98387 RGD:1303243 SPTB 182870 119849 +HGNC:11275 SPTBN1 spectrin beta, non-erythrocytic 1 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 "Pleckstrin homology domain containing|Spectrins" "682|1113" 1989-01-16 2016-01-12 2016-01-12 6711 ENSG00000115306 OTTHUMG00000133746 uc002rxu.4 XM_005264517 "CCDS33198|CCDS33199" Q01082 MGI:98388 RGD:727922 SPTBN1 182790 +HGNC:11276 SPTBN2 spectrin beta, non-erythrocytic 2 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 SCA5 spinocerebellar ataxia 5 "Pleckstrin homology domain containing|Spectrins" "682|1113" 1997-10-16 2016-01-12 2016-01-12 6712 ENSG00000173898 OTTHUMG00000167262 uc001ojd.4 "AB008567|AF026487|AF026488|AF079569" NM_006946 CCDS8150 O15020 "9826670|16429157" MGI:1313261 RGD:3751 SPTBN2 604985 119851 +HGNC:14896 SPTBN4 spectrin beta, non-erythrocytic 4 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "SPTBN3|KIAA1642" "Pleckstrin homology domain containing|Spectrins" "682|1113" 2001-05-09 2016-01-12 2016-01-12 57731 ENSG00000160460 OTTHUMG00000182592 uc002ony.4 AF082075 XM_017027049 "CCDS12559|CCDS42569" Q9H254 11086001 MGI:1890574 RGD:1304682 SPTBN4 606214 +HGNC:15680 SPTBN5 spectrin beta, non-erythrocytic 5 protein-coding gene gene with protein product Approved 15q21 15q21 "HUSPECV|BSPECV|HUBSPECV" beta V spectrin Spectrins 1113 2001-05-29 2016-01-12 2016-01-12 51332 ENSG00000137877 OTTHUMG00000172720 uc001zos.5 AF233523 NM_016642 CCDS61599 Q9NRC6 10764729 MGI:2685200 RGD:1311047 SPTBN5 605916 +HGNC:11277 SPTLC1 serine palmitoyltransferase long chain base subunit 1 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "LCB1|SPTI|HSAN1|hLCB1" HSN1 hereditary sensory neuropathy, type 1 2000-07-31 2016-01-12 2016-10-12 10558 ENSG00000090054 OTTHUMG00000021047 uc004arl.3 Y08685 NM_006415 "CCDS6692|CCDS6693" O15269 9363775 MGI:1099431 RGD:1307140 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_272|http://www.lrg-sequence.org/LRG/LRG_272" SPTLC1 605712 119854 objectId:2509 2.3.1.50 +HGNC:39668 SPTLC1P1 serine palmitoyltransferase long chain base subunit 1 pseudogene 1 pseudogene pseudogene Approved 10p11.22 10p11.22 2011-03-22 2016-01-12 2016-01-12 100874511 ENSG00000230397 OTTHUMG00000017906 NG_032341 PGOHUM00000238713 +HGNC:39669 SPTLC1P2 serine palmitoyltransferase long chain base subunit 1 pseudogene 2 pseudogene pseudogene Approved 6p22.3 06p22.3 2011-03-22 2016-01-12 2016-01-12 100874498 ENSG00000218512 OTTHUMG00000014352 NG_032342 PGOHUM00000243075 +HGNC:39670 SPTLC1P3 serine palmitoyltransferase long chain base subunit 1 pseudogene 3 pseudogene pseudogene Approved 6q12 06q12 2011-03-22 2016-01-12 2016-01-12 100874499 ENSG00000219940 OTTHUMG00000014941 NG_032343 PGOHUM00000243654 +HGNC:39671 SPTLC1P4 serine palmitoyltransferase long chain base subunit 1 pseudogene 4 pseudogene pseudogene Approved 1q21.3 01q21.3 2011-03-22 2016-01-12 2016-01-12 100874500 ENSG00000232678 OTTHUMG00000013057 NG_032344 PGOHUM00000245003 +HGNC:39672 SPTLC1P5 serine palmitoyltransferase long chain base subunit 1 pseudogene 5 pseudogene pseudogene Approved 13q22.3 13q22.3 2011-03-22 2016-01-12 2016-01-12 100874512 ENSG00000227922 OTTHUMG00000017109 NG_032345 PGOHUM00000248637 +HGNC:11278 SPTLC2 serine palmitoyltransferase long chain base subunit 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "KIAA0526|LCB2|LCB2A|hLCB2a" 2000-08-01 2016-01-12 2016-10-12 9517 ENSG00000100596 OTTHUMG00000171540 uc001xub.4 AB011098 NM_004863 CCDS9865 O15270 "8921873|9363775" MGI:108074 RGD:1305447 LRG_371|http://www.lrg-sequence.org/LRG/LRG_371 SPTLC2 605713 244400 objectId:2510 2.3.1.50 +HGNC:16253 SPTLC3 serine palmitoyltransferase long chain base subunit 3 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "LCB2B|FLJ11112|hLCB2b" "C20orf38|SPTLC2L" "chromosome 20 open reading frame 38|serine palmitoyltransferase, long chain base subunit 2-like (aminotransferase 2)" 2001-07-17 2006-12-21 2016-01-12 2016-01-12 55304 ENSG00000172296 OTTHUMG00000031899 uc002wod.2 AL109983 NM_018327 CCDS13115 Q9NUV7 17023427 MGI:2444678 RGD:1310030 SPTLC3 611120 objectId:2511 2.3.1.50 +HGNC:20361 SPTSSA serine palmitoyltransferase small subunit A protein-coding gene gene with protein product Approved 14q13.1 14q13.1 ssSPTa small subunit of serine palmitoyltransferase A C14orf147 "chromosome 14 open reading frame 147|serine palmitoyltransferase, small subunit A" 2003-01-28 2011-07-26 2015-11-17 2015-11-17 171546 ENSG00000165389 OTTHUMG00000140212 uc001wsc.4 AK001993 NM_138288 CCDS9647 Q969W0 19416851 MGI:1913399 RGD:1565821 613540 objectId:2512 +HGNC:24045 SPTSSB serine palmitoyltransferase small subunit B protein-coding gene gene with protein product Approved 3q26.1 03q26.1 "ADMP|ssSPTb" "androgen down regulated in mouse prostate|small subunit of serine palmitoyltransferase B" C3orf57 "chromosome 3 open reading frame 57|serine palmitoyltransferase, small subunit B" 2006-02-06 2011-07-26 2015-11-17 2015-11-17 165679 ENSG00000196542 OTTHUMG00000159073 uc003fee.4 AF458592 NM_145035 CCDS33887 Q8NFR3 "15777716|19416851" MGI:1913433 RGD:2324614 610412 objectId:2513 +HGNC:26818 SPTY2D1 SPT2 chromatin protein domain containing 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "FLJ39441|DKFZp686I068|Spt2" SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae) 2005-10-28 2015-07-31 2015-07-31 144108 ENSG00000179119 OTTHUMG00000167733 uc001moy.4 BX647798 NM_194285 CCDS31441 Q68D10 23378026 MGI:2142062 RGD:2319415 SPTY2D1 +HGNC:44122 SPTY2D1-AS1 SPTY2D1 antisense RNA 1 other unknown Approved 11p15.1 11p15.1 SPTY2D1 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2016-07-20 100506540 ENSG00000247595 OTTHUMG00000167731 uc284myb.1 AK097654 NR_038360 +HGNC:28139 SPX spexin hormone protein-coding gene gene with protein product Approved 12p12.1 12p12.1 "MGC10946|NPQ|spexin" neuropeptide Q C12orf39 chromosome 12 open reading frame 39 2006-01-23 2014-04-16 2014-04-16 2014-11-18 80763 ENSG00000134548 OTTHUMG00000169134 AK027273 NM_030572 CCDS31757 Q9BT56 "22038051|24550067" MGI:2442262 RGD:1587448 +HGNC:30721 SPZ1 spermatogenic leucine zipper 1 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "NYD-TSP1|FLJ25709|PPP1R148" protein phosphatase 1, regulatory subunit 148 Protein phosphatase 1 regulatory subunits 694 2005-11-15 2014-11-19 84654 ENSG00000164299 OTTHUMG00000162514 uc003kgn.4 NM_032567 CCDS43336 Q9BXG8 "11165476|12778315|15226296|15829580|15899793" MGI:1930801 RGD:1562395 SPZ1 +HGNC:11279 SQLE squalene epoxidase protein-coding gene gene with protein product Approved 8q24.13 08q24.13 squalene monooxygenase 1997-05-15 2016-10-05 6713 ENSG00000104549 OTTHUMG00000164990 uc011liq.3 D78130 NM_003129 CCDS47918 Q14534 9286711 MGI:109296 RGD:3755 SQLE 602019 objectId:2433 1.14.13.132 +HGNC:20390 SQRDL sulfide quinone reductase-like (yeast) protein-coding gene gene with protein product Approved 15q21.1 15q21.1 CGI-44 2003-01-31 2015-08-26 58472 ENSG00000137767 OTTHUMG00000131476 uc059ivj.1 AF042284 NM_021199 CCDS10127 Q9Y6N5 "10810093|10224084" MGI:1929899 RGD:1564504 SQRDL +HGNC:11280 SQSTM1 sequestosome 1 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "p62|p60|p62B|A170" "PDB3|OSIL" "Paget disease of bone 3|oxidative stress induced like" Zinc fingers ZZ-type 91 2000-06-13 2004-04-15 2016-10-05 8878 ENSG00000161011 OTTHUMG00000150643 uc003mkw.5 U46751 XM_017010010 "CCDS34317|CCDS47355" Q13501 "8650207|8551575" MGI:107931 RGD:69287 SQSTM1 601530 280122 +HGNC:49099 SQSTM1P1 sequestosome 1 pseudogene 1 pseudogene pseudogene Approved 13q21.31 13q21.31 2013-09-02 2013-09-02 106480677 ENSG00000271465 OTTHUMG00000184733 NG_043211 PGOHUM00000248416 +HGNC:11281 SRA1 steroid receptor RNA activator 1 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "SRA|STRAA1" steriod receptor RNA activator 1 2000-04-13 2002-07-29 2016-10-05 10011 ENSG00000213523 OTTHUMG00000163569 uc003lga.4 AF092038 NM_001035235 CCDS34245 Q9HD15 10199399 MGI:1344414 RGD:621148 SRA1 603819 +HGNC:25521 SRBD1 S1 RNA binding domain 1 protein-coding gene gene with protein product Approved 2p21 02p21 FLJ10379 2006-03-24 2015-08-26 55133 ENSG00000068784 OTTHUMG00000128814 uc002rus.4 AK056536 NM_018079 CCDS1823 Q8N5C6 12477932 MGI:1925836 RGD:1562788 SRBD1 +HGNC:11283 SRC SRC proto-oncogene, non-receptor tyrosine kinase protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "ASV|c-src" SRC1 v-src avian sarcoma (Schmidt-Ruppin A-2) viral oncogene homolog SH2 domain containing 741 2001-06-22 2014-06-25 2016-10-12 6714 ENSG00000197122 OTTHUMG00000032417 uc002xgy.5 AF077754 NM_005417 CCDS13294 P12931 2582238 MGI:98397 RGD:620795 LRG_1018|http://www.lrg-sequence.org/LRG/LRG_1018 SRC 190090 objectId:2206 +HGNC:16974 SRCAP Snf2 related CREBBP activator protein protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "KIAA0309|EAF1|SWR1|DOMO1" "Swi2/Snf2-related ATPase homolog (S. cerevisiae)|domino homolog 1 (Drosophila)" Snf2-related CREBBP activator protein SRCAP complex 1329 2007-11-29 2016-09-14 2016-09-14 10847 ENSG00000080603 OTTHUMG00000132393 uc002dze.2 AB002307 NM_006662 CCDS10689 Q6ZRS2 "10347196|25176633" MGI:2444036 RGD:1565642 SRCAP 611421 292309 +HGNC:29506 SRCIN1 SRC kinase signaling inhibitor 1 protein-coding gene gene with protein product Approved 17q12 17q12 "SNIP|p140Cap|KIAA1684" "p130Cas-associated protein|SNAP-25-interacting protein" 2009-12-14 2015-01-30 80725 ENSG00000277363 OTTHUMG00000188493 uc032glc.2 NM_025248 CCDS45660 Q9C0H9 11214970 MGI:1933179 RGD:708439 SRCIN1 610786 +HGNC:11284 SRD5A1 steroid 5 alpha-reductase 1 protein-coding gene gene with protein product Approved 5p15.31 05p15.31 3-oxo-5-alpha-steroid 4-dehydrogenase 1 steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1) 1991-05-21 2016-01-28 2016-01-28 6715 ENSG00000145545 OTTHUMG00000090456 uc003jdw.4 M32313 NM_001047 CCDS3870 P18405 1686016 MGI:98400 RGD:3757 SRD5A1 184753 1.3.99.5 +HGNC:11286 SRD5A1P1 steroid 5 alpha-reductase 1 pseudogene 1 pseudogene pseudogene Approved Xq27.1 Xq27.1 SRD5AP1 "steroid-5-alpha-reductase, alpha polypeptide pseudogene 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha pseudogene)|steroid-5-alpha-reductase, alpha polypeptide 1 pseudogene 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha pseudogene)|steroid 5 alpha-reductase A1 pseudogene 1" 1991-05-15 2009-12-02 2016-01-28 2016-01-28 6719 ENSG00000232549 OTTHUMG00000022684 M68887 NG_001196 1686016 PGOHUM00000242046 +HGNC:11285 SRD5A2 steroid 5 alpha-reductase 2 protein-coding gene gene with protein product Approved 2p23.1 02p23.1 3-oxo-5-alpha-steroid 4-dehydrogenase 2 steroid-5-alpha-reductase, alpha polypeptide 2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 2) 1991-05-21 2016-01-28 2016-01-28 6716 ENSG00000277893 OTTHUMG00000152057 uc032nip.2 M74047 NM_000348 CCDS74503 P31213 1522235 MGI:2150380 RGD:621480 607306 119860 objectId:2633 1.3.99.5 +HGNC:25812 SRD5A3 steroid 5 alpha-reductase 3 protein-coding gene gene with protein product Approved 4q12 04q12 "FLJ13352|SRD5A2L|SRD5A2L1" 2007-11-12 2014-11-19 79644 ENSG00000128039 OTTHUMG00000128733 uc003hau.4 AK023414 NM_024592 CCDS3498 Q9H8P0 17986282 MGI:1930252 RGD:1308828 SRD5A3 611715 242919 +HGNC:44138 SRD5A3-AS1 SRD5A3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q12 04q12 SRD5A3 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100506462 ENSG00000249700 OTTHUMG00000160655 uc062wsh.1 BC034006 NR_037969 +HGNC:49243 SRD5A3P1 steroid 5 alpha-reductase 3 pseudogene 1 pseudogene pseudogene Approved 11q12.1 11q12.1 2013-10-14 2013-10-14 390203 ENSG00000270929 OTTHUMG00000184761 NG_030280 PGOHUM00000258593 +HGNC:11289 SREBF1 sterol regulatory element binding transcription factor 1 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "SREBP1|bHLHd1|SREBP-1c|SREBP1a" Basic helix-loop-helix proteins 420 1994-11-23 2016-02-03 6720 ENSG00000072310 OTTHUMG00000059313 uc002gru.3 BC057388 NM_004176 "CCDS11189|CCDS32583" P36956 "8402897|7759101" MGI:107606 RGD:69423 SREBF1 184756 +HGNC:11290 SREBF2 sterol regulatory element binding transcription factor 2 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "SREBP2|bHLHd2" Basic helix-loop-helix proteins 420 1994-11-23 2014-11-19 6721 ENSG00000198911 OTTHUMG00000151261 uc003bbi.5 U02031 NM_004599 CCDS14023 Q12772 7903453 MGI:107585 RGD:1307751 SREBF2 600481 +HGNC:17882 SREK1 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding gene gene with protein product Approved 5q12.3 05q12.3 "DKFZp564B176|SRrp86|SRrp508" serine-arginine-rich splicing regulatory protein 508 SFRS12 splicing factor, arginine/serine-rich 12 RNA binding motif containing 725 2002-01-16 2010-09-08 2016-06-06 2016-10-05 140890 ENSG00000153914 OTTHUMG00000097809 uc003jun.5 AF459094 NM_001077199 "CCDS3991|CCDS43323" Q8WXA9 12043562 MGI:2145245 RGD:621696 SREK1 609268 +HGNC:26716 SREK1IP1 SREK1 interacting protein 1 protein-coding gene gene with protein product Approved 5q12.3 05q12.3 "FLJ36754|P18SRP" p18 splicing regulatory protein SFRS12IP1 "SFRS12-interacting protein 1|SREK1-interacting protein 1" 2007-11-20 2010-09-20 2016-01-28 2016-01-28 285672 ENSG00000153006 OTTHUMG00000162291 uc003jtk.4 AK094073 NM_173829 CCDS34171 Q8N9Q2 15456940 MGI:1914538 RGD:1305356 SREK1IP1 +HGNC:11291 SRF serum response factor protein-coding gene gene with protein product Approved 6p21.1 06p21.1 MCM1 "minichromosome maintenance 1 homolog (S. cerevisiae)|c-fos serum response element-binding transcription factor" MADS box family 1086 1995-02-10 2015-08-25 2015-08-25 6722 ENSG00000112658 OTTHUMG00000014722 uc003oui.4 J03161 NM_003131 CCDS4889 P11831 "3203386|7744019" MGI:106658 RGD:1559787 SRF 600589 +HGNC:26333 SRFBP1 serum response factor binding protein 1 protein-coding gene gene with protein product Approved 5q23.1 05q23.1 "FLJ25286|p49|STRAP|BUD22|Rlb1" BUD22 homolog (S. cerevisiae) 2005-04-14 2014-11-19 153443 ENSG00000151304 OTTHUMG00000162970 uc003kst.2 AK058015 NM_152546 CCDS43354 Q8NEF9 15492011 MGI:1914472 RGD:1359398 SRFBP1 610479 +HGNC:17382 SRGAP1 SLIT-ROBO Rho GTPase activating protein 1 protein-coding gene gene with protein product Approved 12q14.2 12q14.2 "KIAA1304|ARHGAP13" "Rho GTPase activating proteins|F-BAR domain containing " "721|1288" 2002-12-09 2016-10-05 57522 ENSG00000196935 OTTHUMG00000168750 uc010ssp.2 AB037725 XM_005269042 CCDS8967 Q7Z6B7 11672528 MGI:2152936 RGD:1566260 SRGAP1 606523 +HGNC:19751 SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "KIAA0456|ARHGAP34|SRGAP2A" FNBP2 formin binding protein 2 "Rho GTPase activating proteins|F-BAR domain containing " "721|1288" 2002-11-25 2004-11-12 2004-11-12 2015-01-30 23380 ENSG00000266028 OTTHUMG00000184381 uc031vli.2 AB007925 NM_015326 "CCDS73017|CCDS76261|CCDS76262" O75044 "15046868|11672528" MGI:109605 RGD:1566016 SRGAP2 606524 +HGNC:40902 SRGAP2-AS1 SRGAP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p11.2 01p11.2 SRGAP2 antisense RNA 1 (non-protein coding) 2012-03-22 2012-08-15 2016-10-11 100873165 ENSG00000230806 OTTHUMG00000013093 uc031uqc.1 AK127439 NR_104189 +HGNC:41454 SRGAP2-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:35237 SRGAP2B SLIT-ROBO Rho GTPase activating protein 2B protein-coding gene gene with protein product Approved 1q21.1 01q21.1 SRGAP2P2 "SLIT-ROBO Rho GTPase activating protein 2 pseudogene 2|SLIT-ROBO Rho GTPase activating protein 2B (pseudogene)" F-BAR domain containing 1288 2008-10-27 2012-05-08 2013-02-13 2014-11-19 647135 ENSG00000196369 OTTHUMG00000041442 uc031urt.2 NM_001271870 "CCDS72854|CCDS81365" P0DMP2 "22559943|22559944" 614703 +HGNC:30584 SRGAP2C SLIT-ROBO Rho GTPase activating protein 2C protein-coding gene gene with protein product Approved 1p11.2 01p11.2 SRGAP2P1 SLIT-ROBO Rho GTPase activating protein 2 pseudogene 1 F-BAR domain containing 1288 2007-03-19 2012-05-08 2012-05-08 2014-11-19 653464 ENSG00000171943 OTTHUMG00000041445 uc057jxs.1 BC112927 XM_005277497 CCDS81364 P0DJJ0 "22559944|22559943" 614704 PGOHUM00000244882 +HGNC:43932 SRGAP2D SLIT-ROBO Rho GTPase activating protein 2D (pseudogene) pseudogene pseudogene Approved 1q21.1 01q21.1 SLIT-ROBO Rho GTPase activating protein 2D 2013-02-13 2014-06-18 2014-07-10 100996712 ENSG00000270872 OTTHUMG00000188642 NR_120535 22559943 614705 +HGNC:19744 SRGAP3 SLIT-ROBO Rho GTPase activating protein 3 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "KIAA0411|MEGAP|WRP|ARHGAP14" SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 "Rho GTPase activating proteins|F-BAR domain containing " "721|1288" 2002-12-09 2004-11-12 2004-11-12 2014-11-18 9901 ENSG00000196220 OTTHUMG00000090589 uc003brf.4 AB007871 XM_017007574 "CCDS2572|CCDS33689" O43295 12195014 MGI:2152938 RGD:1563152 SRGAP3 606525 363255 +HGNC:40898 SRGAP3-AS1 SRGAP3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 SRGAP3 antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874103 ENSG00000224808 OTTHUMG00000155031 uc062gih.1 "AI209215|BX111651" +HGNC:40899 SRGAP3-AS2 SRGAP3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 SRGAP3 antisense RNA 2 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100507660 ENSG00000228723 OTTHUMG00000155019 uc062gin.1 +HGNC:40900 SRGAP3-AS3 SRGAP3 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 SRGAP3 antisense RNA 3 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100288831 ENSG00000227929 OTTHUMG00000155028 uc062gip.2 NR_103443 +HGNC:42434 SRGAP3-AS4 SRGAP3 antisense RNA 4 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 SRGAP3 antisense RNA 4 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874132 ENSG00000235830 OTTHUMG00000155030 uc062gir.1 +HGNC:9361 SRGN serglycin protein-coding gene gene with protein product Approved 10q22.1 10q22.1 PPG serglycin proteoglycan "PRG|PRG1" proteoglycan 1, secretory granule Proteoglycans 570 1988-07-22 2007-02-15 2007-02-15 2014-11-18 5552 ENSG00000122862 OTTHUMG00000018369 uc001joz.4 BC015516 NM_002727 CCDS7285 P10124 MGI:97756 RGD:619969 SRGN 177040 +HGNC:49107 SRGNP1 serglycin pseudogene 1 pseudogene pseudogene Approved 13q22.3 13q22.3 2013-09-03 2013-09-03 106480246 ENSG00000271386 OTTHUMG00000184868 NG_045605 PGOHUM00000248638 +HGNC:11292 SRI sorcin protein-coding gene gene with protein product Approved 7q21.12 07q21.12 EF-hand domain containing 863 1989-03-09 2016-10-12 6717 ENSG00000075142 OTTHUMG00000157267 uc003ujq.3 M32886 NM_003130 "CCDS5612|CCDS47638|CCDS59063" P30626 2901906 MGI:98419 RGD:1584485 LRG_414|http://www.lrg-sequence.org/LRG/LRG_414 SRI 182520 +HGNC:11293 SRIP1 sorcin pseudogene 1 pseudogene pseudogene Approved 4q12 04q12 SRIL sorcin-like 1989-05-15 2010-07-29 2010-07-29 2014-11-19 6644 ENSG00000248660 OTTHUMG00000160660 NG_003017 PGOHUM00000245920 +HGNC:38734 SRIP2 sorcin pseudogene 2 pseudogene pseudogene Approved Xq21.31 Xq21.31 2010-07-29 2014-11-19 100499485 ENSG00000224065 OTTHUMG00000021952 NG_027484 PGOHUM00000241436 +HGNC:38735 SRIP3 sorcin pseudogene 3 pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-07-29 2014-11-19 100861435 ENSG00000224953 OTTHUMG00000035294 NG_032006 PGOHUM00000233679 +HGNC:11295 SRL sarcalumenin protein-coding gene gene with protein product Approved 16p13.3 16p13.3 1992-07-20 2015-09-08 6345 ENSG00000185739 OTTHUMG00000177617 uc002cvz.4 AK056588 XM_064152 "CCDS42113|CCDS81943" Q86TD4 2762314 MGI:2146620 RGD:1306564 SRL 604992 +HGNC:11296 SRM spermidine synthase protein-coding gene gene with protein product Approved 1p36.22 01p36.22 SPS1 SRML1 1991-11-29 2016-10-05 6723 ENSG00000116649 OTTHUMG00000002119 uc001arz.2 BC033106 NM_003132 CCDS125 P19623 2344393 MGI:102690 RGD:620796 SRM 182891 2.5.1.16 +HGNC:11297 SRML2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-11-08 +HGNC:16552 SRMP1 spermidine synthase pseudogene 1 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ1057D4.1 2001-09-17 2012-08-30 170552 ENSG00000215448 OTTHUMG00000032673 AL121777 NG_001057 PGOHUM00000247667 +HGNC:20034 SRMP2 spermidine synthase pseudogene 2 pseudogene pseudogene Approved 14q23.1 14q23.1 2003-01-13 2014-11-19 326269 ENSG00000258485 OTTHUMG00000171293 NG_002532 PGOHUM00000247820 +HGNC:11298 SRMS src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "SRM|dJ697K14.1|PTK70" C20orf148 chromosome 20 open reading frame 148 SH2 domain containing 741 1994-12-16 2003-08-22 2016-04-29 6725 ENSG00000125508 OTTHUMG00000032977 uc002yfi.3 NM_080823 CCDS13525 Q9H3Y6 "7935409|23822091" MGI:101865 RGD:1306602 SRMS objectId:2207 2.7.10.2 +HGNC:11304 SRP9 signal recognition particle 9 protein-coding gene gene with protein product Approved 1q42.12 01q42.12 signal recognition particle 9kDa 1991-12-05 2016-06-22 2016-06-22 6726 ENSG00000143742 OTTHUMG00000037738 uc001hpg.4 BC015094 NM_003133 "CCDS1546|CCDS44323" P49458 7730321 MGI:1350930 RGD:1597343 SRP9 600707 +HGNC:23402 SRP9P1 signal recognition particle 9 pseudogene 1 pseudogene pseudogene Approved 10q23.32 10q23.32 SRP9L1 signal recognition particle 9-like 1 2004-06-02 2010-10-26 2010-10-26 2014-11-19 653226 ENSG00000180581 OTTHUMG00000040029 NG_012272 SRP9P1 +HGNC:11299 SRP14 signal recognition particle 14 protein-coding gene gene with protein product Approved 15q22 15q22 "ALURBP|MGC14326" homologous Alu RNA binding protein signal recognition particle 14kD (homologous Alu RNA-binding protein) 1991-12-05 2016-06-07 2016-06-07 6727 ENSG00000140319 OTTHUMG00000172391 uc001zkq.3 NM_003134 CCDS42017 P37108 8196634 MGI:107169 RGD:1308506 SRP14 600708 +HGNC:48619 SRP14-AS1 SRP14 antisense RNA1 (head to head) non-coding RNA RNA, long non-coding Approved 15q15.1 15q15.1 2013-05-24 2013-05-24 100131089 ENSG00000248508 OTTHUMG00000172392 NR_040059 +HGNC:33181 SRP14P1 signal recognition particle 14 pseudogene 1 pseudogene pseudogene Approved 12p13.31 12p13.31 signal recognition particle 14kDa (homologous Alu RNA binding protein) pseudogene 1 2006-11-16 2016-06-07 2016-06-07 390284 XR_016442.1 +HGNC:11300 SRP19 signal recognition particle 19 protein-coding gene gene with protein product Approved 5q22.2 05q22.2 signal recognition particle 19kDa 1991-12-05 2016-06-22 2016-10-05 6728 ENSG00000153037 OTTHUMG00000186064 uc003kqc.4 NM_003135 "CCDS4108|CCDS56375|CCDS56376|CCDS75286" P09132 2460823 MGI:1913634 RGD:1308437 SRP19 182175 +HGNC:11301 SRP54 signal recognition particle 54 protein-coding gene gene with protein product Approved 14q13.2 14q13.2 signal recognition particle 54kDa 1991-12-05 2016-06-22 2016-06-22 6729 ENSG00000100883 OTTHUMG00000140214 uc001wso.4 X86373 NM_003136 "CCDS9652|CCDS53893" P61011 8722571 "MGI:1346087|MGI:3714357|MGI:3714359" RGD:621390 SRP54 604857 +HGNC:50643 SRP54-AS1 SRP54 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 14q13.2 14q13.2 2014-06-02 2014-06-02 100506157 ENSG00000258704 OTTHUMG00000170821 XR_001750948 +HGNC:11302 SRP68 signal recognition particle 68 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "signal recognition particle 68kD|signal recognition particle 68kDa" 1991-12-05 2016-04-04 2016-04-04 6730 ENSG00000167881 OTTHUMG00000180054 uc002jqk.3 AF195951 NM_014230 "CCDS11738|CCDS58600|CCDS58601" Q9UHB9 10618370 MGI:1917447 RGD:1305376 SRP68 604858 +HGNC:30427 SRP68P1 signal recognition particle 68 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 SRPSMCR "signal recognition particle, Smith Magenis syndrome chromosome region|signal recognition particle 68kDa pseudogene 1" 2010-04-30 2016-06-22 2016-06-22 252841 ENSG00000266129 OTTHUMG00000178995 NG_001591 11997339 PGOHUM00000293969 +HGNC:30426 SRP68P2 signal recognition particle 68 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 SRPSMCR signal recognition particle 68kDa pseudogene 2 2010-04-30 2016-06-22 2016-06-22 252840 ENSG00000227689 OTTHUMG00000059407 NG_001590 11997339 PGOHUM00000294299 +HGNC:30428 SRP68P3 signal recognition particle 68 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 SRPSMCR signal recognition particle 68kDa pseudogene 3 2010-04-30 2016-06-22 2016-06-22 347717 ENSG00000237911 OTTHUMG00000130729 NG_002720 11997339 PGOHUM00000293987 +HGNC:11303 SRP72 signal recognition particle 72 protein-coding gene gene with protein product Approved 4q12 04q12 signal recognition particle 72kDa Tetratricopeptide repeat domain containing 769 1991-12-05 2016-06-22 2016-10-05 6731 ENSG00000174780 OTTHUMG00000128843 uc003hbv.4 AF069765 XM_005265765 "CCDS3506|CCDS58898" O76094 "9224693|9857079" MGI:1333795 RGD:1564787 SRP72 602122 317739 +HGNC:31095 SRP72P1 signal recognition particle 72 pseudogene 1 pseudogene pseudogene Approved 18q21.1 18q21.1 signal recognition particle 72kDa pseudogene 1 2004-06-09 2016-06-22 2016-06-22 100420752 ENSG00000265182 OTTHUMG00000179681 NG_026292 PGOHUM00000234929 +HGNC:31096 SRP72P2 signal recognition particle 72 pseudogene 2 pseudogene pseudogene Approved 6q25.3 06q25.3 dJ274L14.2 signal recognition particle 72kDa pseudogene 2 2004-06-09 2016-06-22 2016-06-22 153932 ENSG00000188451 OTTHUMG00000015907 NG_001558 PGOHUM00000243430 +HGNC:11305 SRPK1 SRSF protein kinase 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 SFRSK1 "SR protein kinase 1|serine/arginine-rich splicing factor kinase 1" SFRS protein kinase 1 1998-03-02 2010-06-23 2014-11-19 6732 ENSG00000096063 OTTHUMG00000014583 uc003olj.4 U09564 NM_003137 CCDS47415 Q96SB4 "8208298|10198174" MGI:106908 RGD:1308272 SRPK1 601939 objectId:2208 +HGNC:11306 SRPK2 SRSF protein kinase 2 protein-coding gene gene with protein product Approved 7q22.3 07q22.3 SFRSK2 "SR protein kinase 2|serine/arginine-rich splicing factor kinase 2" SFRS protein kinase 2 1998-03-02 2010-06-23 2016-10-05 6733 ENSG00000135250 OTTHUMG00000157405 uc003vcu.5 U88666 NM_182691 "CCDS5735|CCDS34724" P78362 "8208298|9472028" MGI:1201408 RGD:1305107 SRPK2 602980 objectId:2209 +HGNC:30303 SRPK2P SRSF protein kinase 2 pseudogene pseudogene pseudogene Approved 8q12.3 08q12.3 SRPK2ps SFRS protein kinase 2 pseudogene 2005-03-17 2010-06-23 2014-11-19 100419416 ENSG00000253431 OTTHUMG00000164363 NG_026032 PGOHUM00000249362 +HGNC:11402 SRPK3 SRSF protein kinase 3 protein-coding gene gene with protein product Approved Xq28 Xq28 MSSK1 STK23 "serine/threonine kinase 23|SFRS protein kinase 3" 1999-12-01 2006-08-17 2010-06-23 2014-11-18 26576 ENSG00000184343 OTTHUMG00000024207 uc004fil.4 AF027406 NM_014370 "CCDS35441|CCDS55537|CCDS55538" Q9UPE1 16140986 MGI:1891338 RGD:727856 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SRPK3 SRPK3 objectId:2210 +HGNC:11307 SRPRA SRP receptor alpha subunit protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "SRP-alpha|Sralpha|SR-alpha" SRPR signal recognition particle receptor (docking protein) 2001-06-22 2015-11-20 2015-11-20 2015-11-20 6734 ENSG00000182934 OTTHUMG00000165826 uc001qdh.4 BC001162 NM_003139 "CCDS31717|CCDS53722" P08240 "3340536|1312991" MGI:1914648 RGD:1311504 182180 +HGNC:24085 SRPRB SRP receptor beta subunit protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "APMCF1|SR-beta" signal recognition particle receptor, B subunit 2004-01-29 2015-11-20 2015-11-20 58477 ENSG00000144867 OTTHUMG00000159753 uc003epx.2 AK075531 NM_021203 CCDS3081 Q9Y5M8 "7844142|10859309" MGI:102964 RGD:1304698 SRPRB 616883 +HGNC:11309 SRPX sushi repeat containing protein, X-linked protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 ETX1 "sushi-repeat-containing protein, X chromosome|sushi-repeat-containing protein, X-linked" Sushi domain containing 1179 1998-09-14 2016-03-03 2016-10-05 8406 ENSG00000101955 OTTHUMG00000021362 uc004ddy.3 U78093 NM_006307 "CCDS14245|CCDS55400|CCDS55401|CCDS55402" P78539 "8634708|8634709" MGI:1858306 RGD:70950 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SRPX SRPX 300187 +HGNC:30668 SRPX2 sushi repeat containing protein, X-linked 2 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 SRPUL sushi-repeat-containing protein, X-linked 2 Sushi domain containing 1179 2004-06-25 2016-03-03 2016-03-03 27286 ENSG00000102359 OTTHUMG00000022003 uc004egb.4 AF393649 NM_014467 CCDS14471 O60687 9864177 MGI:1916042 RGD:1562444 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SRPX2 SRPX2 300642 119862 +HGNC:14398 SRR serine racemase protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "ILV1|ISO1" 2001-01-16 2016-10-05 63826 ENSG00000167720 OTTHUMG00000090583 uc002fue.2 AF169974 NM_021947 CCDS11017 Q9GZT4 "17067558|15953485|15193426|11054547" MGI:1351636 RGD:735094 SRR 606477 5.1.1.18 +HGNC:33910 SRRD SRR1 domain containing protein-coding gene gene with protein product Approved 22q12.1 22q12.1 "HC/HCC|SRR1L" hepatocellular carcinoma complicating hemochromatosis 2007-12-05 2014-11-19 402055 ENSG00000100104 OTTHUMG00000150885 uc010gve.4 BC066962 NM_001013694 CCDS42995 Q9UH36 MGI:1917368 RGD:1562579 SRRD 602254 +HGNC:16638 SRRM1 serine and arginine repetitive matrix 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "SRM160|POP101|MGC39488" "Ser/Arg-related nuclear matrix protein|plenty of prolines 101-like" serine/arginine repetitive matrix 1 2001-09-24 2016-03-10 2016-10-05 10250 ENSG00000133226 OTTHUMG00000003320 uc001bjm.4 AF048977 NM_005839 CCDS255 Q8IYB3 9531537 MGI:1858303 RGD:1311258 SRRM1 605975 +HGNC:31861 SRRM1P1 serine/arginine repetitive matrix 1 pseudogene 1 pseudogene pseudogene Approved 8q24.21 08q24.21 "SRRM1L|SRRM1P" "serine/arginine repetitive matrix 1-like|serine/arginine repetitive matrix 1 pseudogene" 2004-12-01 2010-07-07 2010-07-07 2010-07-07 401475 NG_011412 +HGNC:38163 SRRM1P2 serine/arginine repetitive matrix 1 pseudogene 2 pseudogene pseudogene Approved 3p12.1 03p12.1 2010-04-22 2014-11-19 100420834 ENSG00000242195 OTTHUMG00000158955 NG_022252 PGOHUM00000238089 +HGNC:38164 SRRM1P3 serine/arginine repetitive matrix 1 pseudogene 3 pseudogene pseudogene Approved Xq26.3 Xq26.3 2010-04-22 2014-11-19 100130190 ENSG00000237307 OTTHUMG00000022520 NG_022643 PGOHUM00000241573 +HGNC:16639 SRRM2 serine/arginine repetitive matrix 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "SRm300|SRL300|KIAA0324|Cwc21" 2001-09-24 2015-08-26 23524 ENSG00000167978 OTTHUMG00000177358 uc002crk.3 AF201422 XR_932816 CCDS32373 Q9UQ35 "10668804|11004489" MGI:1923206 RGD:1310163 SRRM2 606032 +HGNC:44162 SRRM2-AS1 SRRM2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 SRRM2 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100128788 ENSG00000205913 OTTHUMG00000177357 uc010uwg.2 AK056063 NR_027274 +HGNC:26729 SRRM3 serine/arginine repetitive matrix 3 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 FLJ37078 2009-09-21 2015-09-08 222183 ENSG00000177679 OTTHUMG00000130489 uc032ztw.2 AK092590 NM_001110199 A6NNA2 MGI:1920309 RGD:1587868 SRRM3 +HGNC:29389 SRRM4 serine/arginine repetitive matrix 4 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 nSR100 neural-specific SR-related protein of 100 kDa KIAA1853 KIAA1853 2006-01-13 2009-09-21 2009-09-21 2009-09-22 84530 ENSG00000139767 OTTHUMG00000168928 uc001txa.2 AB058756 NM_194286 CCDS44994 A7MD48 19737518 MGI:1916205 RGD:1560213 SRRM4 613103 +HGNC:37248 SRRM5 serine/arginine repetitive matrix 5 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 2009-09-22 2015-09-08 100170229 ENSG00000226763 OTTHUMG00000165480 uc002oxb.5 AK297891 NM_001145641 CCDS46095 B3KS81 RGD:2323012 SRRM5 +HGNC:24101 SRRT serrate, RNA effector molecule protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "Asr2|serrate|ARS2" arsenite resistance protein serrate RNA effector molecule homolog (Arabidopsis) 2009-03-02 2014-04-14 2016-10-05 51593 ENSG00000087087 OTTHUMG00000157031 uc032zzv.2 NM_015908 "CCDS34709|CCDS47665|CCDS47666|CCDS47667" Q9BXP5 "11239002|11230166" MGI:1933527 RGD:1591241 SRRT 614469 +HGNC:10780 SRSF1 serine and arginine rich splicing factor 1 protein-coding gene gene with protein product Approved 17q22 17q22 "ASF|SF2|SRp30a|SF2p33|MGC5228" "splicing factor 2|pre-mRNA-splicing factor SF2, P33 subunit|alternate splicing factor|SR splicing factor 1" SFRS1 "splicing factor, arginine/serine-rich 1|serine/arginine-rich splicing factor 1" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 1993-09-17 2010-06-22 2016-06-06 2016-06-06 6426 ENSG00000136450 OTTHUMG00000178781 uc002ivi.4 NM_006924 "CCDS11600|CCDS58580" Q07955 "8530103|20516191" MGI:98283 RGD:1587490 SRSF1 600812 +HGNC:39417 SRSF1P1 serine and arginine rich splicing factor 1 pseudogene 1 pseudogene pseudogene Approved 13q21.33 13q21.33 serine/arginine-rich splicing factor 1 pseudogene 1 2010-12-03 2016-06-06 2016-06-06 100128625 ENSG00000224640 OTTHUMG00000017054 NG_011455 +HGNC:10783 SRSF2 serine and arginine rich splicing factor 2 protein-coding gene gene with protein product Approved 17q25.2 17q25.2 "SC-35|SC35|PR264|SFRS2A" SR splicing factor 2 SFRS2 "splicing factor, arginine/serine-rich 2|serine/arginine-rich splicing factor 2" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 1993-09-17 2010-06-22 2016-06-06 2016-10-12 6427 ENSG00000161547 OTTHUMG00000177547 uc002jsy.5 M90104 NM_003016 CCDS11749 Q01130 "8530103|20516191" MGI:98284 RGD:1359422 LRG_640|http://www.lrg-sequence.org/LRG/LRG_640 SRSF2 600813 +HGNC:10785 SRSF3 serine and arginine rich splicing factor 3 protein-coding gene gene with protein product Approved 6p21.31-p21.2 06p21.31-p21.2 SRp20 SFRS3 "splicing factor, arginine/serine-rich 3|serine/arginine-rich splicing factor 3" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 1993-09-17 2010-06-22 2016-06-06 2016-10-11 6428 ENSG00000112081 OTTHUMG00000014599 uc003omj.4 L10838 NM_003017 CCDS4823 P84103 "1577277|20516191" MGI:98285 RGD:1309233 SRSF3 603364 +HGNC:10786 SRSF4 serine and arginine rich splicing factor 4 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 SRP75 SR splicing factor 4 SFRS4 "splicing factor, arginine/serine-rich 4|serine/arginine-rich splicing factor 4" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 1993-09-17 2010-06-22 2016-06-06 2016-06-06 6429 ENSG00000116350 OTTHUMG00000003663 uc001bro.4 BC002781 NM_005626 CCDS333 Q08170 "8321209|20516191" MGI:1890577 RGD:1561347 SRSF4 601940 +HGNC:10787 SRSF5 serine and arginine rich splicing factor 5 protein-coding gene gene with protein product Approved 14q24 14q24 "SRP40|HRS" SR splicing factor 5 SFRS5 "splicing factor, arginine/serine-rich 5|serine/arginine-rich splicing factor 5" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 1993-09-17 2010-06-22 2016-06-06 2016-06-06 6430 ENSG00000100650 OTTHUMG00000171235 uc001xll.4 AF020307 NM_001039465 CCDS32109 Q13243 "7686911|20516191" MGI:98287 RGD:3664 SRSF5 600914 +HGNC:10788 SRSF6 serine and arginine rich splicing factor 6 protein-coding gene gene with protein product Approved 20q13.11 20q13.11 "SRP55|B52" "pre-mRNA splicing factor SRP55|SR splicing factor 6" SFRS6 "splicing factor, arginine/serine-rich 6|serine/arginine-rich splicing factor 6" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 1993-09-17 2010-06-22 2016-06-06 2016-10-05 6431 ENSG00000124193 OTTHUMG00000032502 uc010zwg.3 U30883 NM_006275 CCDS13318 Q13247 "7556075|20516191" MGI:1915246 RGD:1359241 SRSF6 601944 +HGNC:10789 SRSF7 serine and arginine rich splicing factor 7 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 "9G8|ZCRB2|HSSG1|AAG3|RBM37|ZCCHC20" SR splicing factor 7 SFRS7 "splicing factor, arginine/serine-rich 7 (35kD)|splicing factor, arginine/serine-rich 7, 35kDa|serine/arginine-rich splicing factor 7" "Zinc fingers CCHC-type|RNA binding motif containing|Serine and arginine rich splicing factors" "74|725|737" 1994-08-31 2010-06-22 2016-06-06 2016-06-06 6432 ENSG00000115875 OTTHUMG00000102076 uc002rqz.3 L41887 NM_001031684 "CCDS33183|CCDS56115" Q16629 "8013463|20516191" MGI:1926232 RGD:1307425 SRSF7 600572 +HGNC:16988 SRSF8 serine and arginine rich splicing factor 8 protein-coding gene gene with protein product Approved 11q21 11q21 SRP46 SR splicing factor 8 SFRS2B "splicing factor, arginine/serine-rich 2B|serine/arginine-rich splicing factor 8" Serine and arginine rich splicing factors 737 2006-08-04 2010-06-22 2016-06-06 2016-06-06 10929 ENSG00000263465 OTTHUMG00000188534 uc031ybj.2 AF031166 NM_032102 CCDS73370 Q9BRL6 "9671500|20516191" RGD:1563383 603269 +HGNC:10791 SRSF9 serine and arginine rich splicing factor 9 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 SRp30c SR splicing factor 9 SFRS9 "splicing factor, arginine/serine-rich 9|serine/arginine-rich splicing factor 9" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 1998-11-19 2010-06-22 2016-06-06 2016-06-06 8683 ENSG00000111786 OTTHUMG00000047790 uc001tyi.4 U30825 NM_003769 CCDS9199 Q13242 "7556075|20516191" MGI:104896 RGD:1309495 SRSF9 601943 +HGNC:10792 SRSF9P1 serine and arginine rich splicing factor 9 pseudogene 1 pseudogene pseudogene Approved 21q22.12 21q22.12 SFRS9P1 "splicing factor, arginine/serine-rich 9 pseudogene 1|serine/arginine-rich splicing factor 9 pseudogene 1" 2000-05-23 2010-06-23 2016-06-06 2016-06-06 54021 ENSG00000214867 OTTHUMG00000086621 NG_000902 PGOHUM00000239077 +HGNC:16713 SRSF10 serine and arginine rich splicing factor 10 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "TASR1|TASR2|SRp38|SRrp40|SFRS13|PPP1R149" "splicing factor, arginine/serine-rich 13|SR splicing factor 10|protein phosphatase 1, regulatory subunit 149" "FUSIP2|FUSIP1|SFRS13A" "FUS-interacting protein (serine-arginine rich) 2|FUS interacting protein (serine/arginine-rich) 1|splicing factor, arginine/serine-rich 13A|neural-salient SR protein|serine/arginine-rich splicing factor 10" "Protein phosphatase 1 regulatory subunits|RNA binding motif containing|Serine and arginine rich splicing factors" "694|725|737" 2001-10-19 2010-06-22 2016-06-06 2016-06-06 10772 ENSG00000188529 OTTHUMG00000013893 uc057dig.1 AF047448 NM_006625 "CCDS30629|CCDS30630|CCDS53280|CCDS53281|CCDS53282|CCDS53283|CCDS72728" O75494 "11891055|20516191" MGI:1333805 RGD:1311067 SRSF10 605221 +HGNC:31002 SRSF10P1 serine and arginine rich splicing factor 10 pseudogene 1 pseudogene pseudogene Approved 18q21.1 18q21.1 HsT2687 "FUSIP1P|SFRS13AP1" "FUS interacting protein (serine/arginine-rich) 1 pseudogene|splicing factor, arginine/serine-rich 13A 1 pseudogene|serine/arginine-rich splicing factor 10 pseudogene 1" 2004-01-05 2010-06-22 2016-06-06 2016-06-06 100130799 ENSG00000267717 OTTHUMG00000180041 NG_030046 +HGNC:24823 SRSF10P2 serine and arginine rich splicing factor 10 pseudogene 2 pseudogene pseudogene Approved 20p12.3 20p12.3 "FUSIP1P2|SFRS13AP2" "FUS interacting protein (serine/arginine-rich) 1 pseudogene 2|splicing factor, arginine/serine-rich 13A pseudogene 2|serine/arginine-rich splicing factor 10 pseudogene 2" 2007-07-31 2010-06-22 2016-06-06 2016-06-06 171472 NG_001017 +HGNC:10782 SRSF11 serine and arginine rich splicing factor 11 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "p54|NET2" SR splicing factor 11 SFRS11 "splicing factor, arginine/serine-rich 11|serine/arginine-rich splicing factor 11" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 1999-03-09 2010-06-22 2016-06-06 2016-06-06 9295 ENSG00000116754 OTTHUMG00000009342 uc001des.4 M74002 NM_004768 "CCDS647|CCDS53332" Q05519 "1896467|20516191" MGI:1916457 RGD:1559953 SRSF11 602010 +HGNC:49884 SRSF11P1 serine and arginine rich splicing factor 11 pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 serine/arginine-rich splicing factor 11 pseudogene 1 2014-03-18 2016-06-06 2016-06-06 100421296 NG_024068 PGOHUM00000239698 +HGNC:21220 SRSF12 serine and arginine rich splicing factor 12 protein-coding gene gene with protein product Approved 6q15 06q15 "SRrp35|SFRS19" "splicing factor, arginine/serine-rich 19|SR splicing factor 12" SFRS13B "splicing factor, arginine/serine-rich 13B|serine/arginine-rich splicing factor 12" "RNA binding motif containing|Serine and arginine rich splicing factors" "725|737" 2009-09-09 2010-06-22 2016-06-06 2016-10-05 135295 ENSG00000154548 OTTHUMG00000015192 uc063qaq.1 AF449428 NM_080743 CCDS47459 Q8WXF0 "11684676|20516191" MGI:2661424 RGD:1561162 SRSF12 +HGNC:16132 SRXN1 sulfiredoxin 1 protein-coding gene gene with protein product Approved 20p13 20p13 "Npn3|SRX1|YKL086W|dJ850E9.2" C20orf139 "chromosome 20 open reading frame 139|sulfiredoxin 1 homolog (S. cerevisiae)" 2001-07-17 2005-05-10 2010-06-24 2014-11-19 140809 ENSG00000271303 OTTHUMG00000031644 uc002wea.5 AF075053 NM_080725 CCDS13005 Q9BYN0 MGI:104971 RGD:1307332 SRXN1 +HGNC:11311 SRY sex determining region Y protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 TDF testis-determining factor 1990-09-10 2016-10-05 6736 ENSG00000184895 OTTHUMG00000036084 uc004fqg.3 NM_003140 CCDS14772 Q05066 18454134 MGI:98660 RGD:3759 SRY 480000 119865 +HGNC:11340 SS18 SS18, nBAF chromatin remodeling complex subunit protein-coding gene gene with protein product Approved 18q11.2 18q11.2 SYT SSXT synovial sarcoma translocation, chromosome 18 1995-03-06 2016-04-29 2016-04-29 6760 ENSG00000141380 OTTHUMG00000179425 uc002kvm.4 X79201 XM_011526147 "CCDS32807|CCDS54183|CCDS77168" Q15532 "8152806|7951320|16484776" MGI:107708 RGD:1311919 SS18 600192 119868 +HGNC:15592 SS18L1 SS18L1, nBAF chromatin remodeling complex subunit protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "KIAA0693|CREST" calcium-responsive transactivator synovial sarcoma translocation gene on chromosome 18-like 1 2001-04-26 2016-04-29 2016-10-05 26039 ENSG00000184402 OTTHUMG00000032902 uc002ycb.4 AB014593 XM_005260389 CCDS13491 O75177 MGI:2444061 RGD:621847 SS18L1 606472 +HGNC:15593 SS18L2 SS18 like 2 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 KIAA-iso SYT homolog 2 synovial sarcoma translocation gene on chromosome 18-like 2 2001-04-26 2016-04-29 2016-10-05 51188 ENSG00000008324 OTTHUMG00000131794 uc062iqb.1 AF201950 NM_016305 CCDS2701 Q9UHA2 11435705 MGI:1349474 RGD:1590139 SS18L2 606473 +HGNC:44965 SS18L2P1 SS18 like 2 pseudogene 1 pseudogene pseudogene Approved 10p11.21 10p11.21 synovial sarcoma translocation gene on chromosome 18-like 2 pseudogene 1 2012-12-20 2016-04-29 2016-04-29 646213 ENSG00000232525 OTTHUMG00000017946 NG_005608 PGOHUM00000238720 +HGNC:44966 SS18L2P2 SS18 like 2 pseudogene 2 pseudogene pseudogene Approved 18q21.2 18q21.2 synovial sarcoma translocation gene on chromosome 18-like 2 pseudogene 2 2012-12-20 2016-04-29 2016-04-29 724101 ENSG00000266201 OTTHUMG00000179693 NG_005609 PGOHUM00000234931 +HGNC:11315 SSAV1L entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:11314 SSAV1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:11316 SSB Sjogren syndrome antigen B protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "LARP3|La|La/SSB" "La ribonucleoprotein domain family, member 3|Lupus La protein|La autoantigen" Sjogren syndrome antigen B (autoantigen La) "La ribonucleoprotein domain containing|RNA binding motif containing" "625|725" 1990-09-10 2005-06-16 2015-11-19 2015-11-19 6741 ENSG00000138385 OTTHUMG00000132212 uc061piv.1 NM_003142 CCDS2237 P05455 "2468131|1692037" MGI:98423 RGD:620804 SSB 109090 +HGNC:11317 SSBP1 single stranded DNA binding protein 1 protein-coding gene gene with protein product Approved 7q34 07q34 "SSBP|mtSSB" "single-stranded DNA-binding protein|single-stranded DNA binding protein 1|single-stranded DNA binding protein 1, mitochondrial" 1994-09-29 2016-03-18 2016-03-18 6742 ENSG00000106028 OTTHUMG00000157572 uc064iri.1 M94556 NM_003143 CCDS5866 Q04837 7789991 MGI:1920040 RGD:3760 SSBP1 600439 +HGNC:15831 SSBP2 single stranded DNA binding protein 2 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 HSPC116 "single-stranded DNA-binding protein 2|single-stranded DNA binding protein 2" 2001-06-14 2016-03-18 2016-03-18 23635 ENSG00000145687 OTTHUMG00000119039 uc003kho.5 AF077048 NM_012446 "CCDS4056|CCDS58960|CCDS58961|CCDS58962|CCDS58963|CCDS75268" P81877 "11230166|11042152" MGI:1914220 RGD:1562968 SSBP2 607389 +HGNC:15674 SSBP3 single stranded DNA binding protein 3 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "CSDP|SSDP|FLJ10355|SSDP1" single-stranded DNA-binding protein 3 2002-01-29 2001-11-28 2015-09-09 23648 ENSG00000157216 OTTHUMG00000008264 uc001cxe.5 NM_018070 "CCDS590|CCDS591|CCDS30726" Q9BWW4 12079286 MGI:1919725 RGD:621502 SSBP3 607390 +HGNC:32328 SSBP3-AS1 SSBP3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p32.3 01p32.3 MSTP128 C1orf191 chromosome 1 open reading frame 191 2005-10-11 2013-08-29 2013-08-29 2014-11-18 619518 ENSG00000198711 OTTHUMG00000008365 AF176918 NR_103541 Q7Z2R9 +HGNC:15676 SSBP4 single stranded DNA binding protein 4 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 2002-01-29 2015-08-26 170463 ENSG00000130511 OTTHUMG00000183362 uc002niy.4 NM_032627 "CCDS12378|CCDS32960" Q9BWG4 12079286 MGI:1924150 RGD:1359619 SSBP4 607391 +HGNC:14461 SSC4D scavenger receptor cysteine rich family member with 4 domains protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "SRCRB-S4D|S4D-SRCRB" scavenger receptor cysteine-rich protein SRCRB-S4D SRCRB4D "scavenger receptor cysteine rich domain containing, group B (4 domains)|scavenger receptor cysteine rich family, 4 domains" Scavenger receptors 1253 2002-01-18 2014-07-09 2016-04-29 2016-04-29 136853 ENSG00000146700 OTTHUMG00000022864 NM_080744 CCDS5585 Q8WTU2 12466895 MGI:1924709 RGD:1306970 607639 +HGNC:26641 SSC5D scavenger receptor cysteine rich family member with 5 domains protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "FLJ35258|S5D-SRCRB" soluble scavenger with 5 domains scavenger receptor cysteine rich domain containing (5 domains) Scavenger receptors 1253 2011-01-28 2016-04-29 2016-04-29 284297 ENSG00000179954 OTTHUMG00000180855 uc002qlg.5 XM_001718392 "CCDS46196|CCDS59424" A1L4H1 19535143 MGI:3606211 RGD:1565772 SSC5D +HGNC:11319 SSFA2 sperm specific antigen 2 protein-coding gene gene with protein product Approved 2q31.3 02q31.3 "CS-1|SPAG13|KRAP|KIAA1927" "cleavage signal-1 protein|KRAS-induced actin-interacting protein|sperm associated antigen 13" 1997-10-16 2016-10-05 6744 ENSG00000138434 OTTHUMG00000132584 uc002uoh.5 M61199 NM_006751 "CCDS2284|CCDS46467|CCDS74611" P28290 "1555770|23541577" MGI:1917849 RGD:1310767 SSFA2 118990 +HGNC:30579 SSH1 slingshot protein phosphatase 1 protein-coding gene gene with protein product Approved 12q24.12 12q24.12 KIAA1298 slingshot homolog 1 (Drosophila) Slingshot protein phosphatases 898 2004-06-15 2013-03-05 2013-03-05 54434 ENSG00000084112 OTTHUMG00000169371 uc001tnm.4 BC062341 NM_018984 "CCDS9121|CCDS53825|CCDS55882" Q8WYL5 "10718198|11832213" MGI:2686240 RGD:1306038 SSH1 606778 +HGNC:30580 SSH2 slingshot protein phosphatase 2 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 KIAA1725 slingshot homolog 2 (Drosophila) Slingshot protein phosphatases 898 2004-06-15 2013-03-05 2014-11-18 85464 ENSG00000141298 OTTHUMG00000132752 uc002heo.3 AB072359 NM_033389 "CCDS11253|CCDS74024" Q76I76 "11832213|11214970" MGI:2679255 RGD:1309389 SSH2 606779 +HGNC:30581 SSH3 slingshot protein phosphatase 3 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "FLJ20515|FLJ10928" slingshot homolog 3 (Drosophila) Slingshot protein phosphatases 898 2004-06-15 2013-03-05 2016-10-05 54961 ENSG00000172830 OTTHUMG00000167105 uc001okj.4 AF085851 NM_018276 CCDS8157 Q8TE77 11832213 MGI:2683546 RGD:1308679 SSH3 606780 +HGNC:29580 SSMEM1 serine rich single-pass membrane protein 1 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 FLJ40316 C7orf45 chromosome 7 open reading frame 45 2006-08-21 2013-03-08 2016-06-06 2016-06-06 136263 ENSG00000165120 OTTHUMG00000157844 uc003vpp.4 AK097635 NM_145268 CCDS5816 Q8WWF3 12477932 MGI:1922897 RGD:1559502 +HGNC:11321 SSNA1 SS nuclear autoantigen 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "NA14|N14" "Sjogren's syndrome nuclear autoantigen 1|Sjogren syndrome nuclear autoantigen 1" 1999-12-08 2016-05-19 2016-05-19 8636 ENSG00000176101 OTTHUMG00000020982 uc004cls.3 Z96932 NM_003731 CCDS7034 O43805 9430706 MGI:1915725 RGD:1310259 SSNA1 610882 +HGNC:11322 SSPN sarcospan protein-coding gene gene with protein product Approved 12p11.2 12p11.2 "SPN1|SPN2" KRAG Kras oncogene-associated gene 1999-03-08 2012-03-14 2016-10-12 8082 ENSG00000123096 OTTHUMG00000169167 uc001rhe.4 AF016028 NM_005086 "CCDS8707|CCDS44850" Q14714 "9395445|8661122" MGI:1353511 RGD:1559723 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SSPN|LRG_209|http://www.lrg-sequence.org/LRG/LRG_209" SSPN 601599 +HGNC:21998 SSPO SCO-spondin protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "SCO-spondin|KIAA0543|FLJ36112" "subcommissural organ spondin|SCO protein, thrombospondin domain containing" SCO-spondin homolog (Bos taurus) 2005-11-25 2013-08-06 2014-11-18 23145 ENSG00000197558 OTTHUMG00000157884 uc064jau.1 AK093431 NM_198455 A2VEC9 "8743952|11008217" MGI:2674311 RGD:1549716 +HGNC:11323 SSR1 signal sequence receptor subunit 1 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 TRAPA translocon-associated protein alpha signal sequence receptor, alpha Minor histocompatibility antigens 870 1995-01-16 2016-05-05 2016-05-05 6745 ENSG00000124783 OTTHUMG00000014202 uc003mxf.6 NM_001292008 "CCDS4499|CCDS78109" P43307 MGI:105082 RGD:1310961 SSR1 600868 +HGNC:39273 SSR1P1 signal sequence receptor subunit 1 pseudogene 1 pseudogene pseudogene Approved 6q25.1 06q25.1 signal sequence receptor, alpha pseudogene 1 2010-11-24 2016-05-05 2016-05-05 100420476 ENSG00000220598 OTTHUMG00000015819 NG_025880 PGOHUM00000243417 +HGNC:39274 SSR1P2 signal sequence receptor subunit 1 pseudogene 2 pseudogene pseudogene Approved 13q22.2 13q22.2 signal sequence receptor, alpha pseudogene 2 2010-11-24 2016-05-05 2016-05-05 100131189 ENSG00000226665 OTTHUMG00000017084 NG_021969 PGOHUM00000248634 +HGNC:11324 SSR2 signal sequence receptor subunit 2 protein-coding gene gene with protein product Approved 1q22 01q22 "TLAP|TRAPB" translocon-associated protein beta signal sequence receptor, beta (translocon-associated protein beta) 1995-01-17 2016-05-05 2016-10-05 6746 ENSG00000163479 OTTHUMG00000017456 uc001fmx.4 BC000341 NM_003145 CCDS1126 P43308 7789174 MGI:1913506 RGD:1308365 SSR2 600867 +HGNC:11325 SSR3 signal sequence receptor subunit 3 protein-coding gene gene with protein product Approved 3q25.31 03q25.31 TRAPG translocon-associated protein gamma signal sequence receptor, gamma (translocon-associated protein gamma) 1997-11-04 2016-05-05 2016-05-05 6747 ENSG00000114850 OTTHUMG00000158632 uc003fau.3 BC017203 NM_007107 "CCDS3176|CCDS77846|CCDS82865" Q9UNL2 MGI:1914687 RGD:621630 SSR3 606213 +HGNC:11326 SSR4 signal sequence receptor subunit 4 protein-coding gene gene with protein product Approved Xq28 Xq28 TRAPD translocon-associated protein delta signal sequence receptor, delta 1997-11-04 2016-05-05 2016-05-05 6748 ENSG00000180879 OTTHUMG00000024212 uc065bwy.1 BC032351 NM_006280 CCDS14731 P51571 9286695 MGI:1099464 RGD:62034 SSR4 300090 377052 +HGNC:23131 SSR4P1 signal sequence receptor subunit 4 pseudogene 1 pseudogene pseudogene Approved 21q22.3 21q22.3 "PRED90|MGC10960|PRED57" C21orf122 "chromosome 21 open reading frame 122|signal sequence receptor, delta pseudogene 1" 2003-10-01 2011-08-31 2016-05-05 2016-05-05 728039 ENSG00000235374 OTTHUMG00000090297 BC004343 NR_027292 PGOHUM00000239095 +HGNC:11327 SSRP1 structure specific recognition protein 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 FACT80 facilitates chromatin remodeling 80 kDa subunit 1994-07-21 2016-10-05 6749 ENSG00000149136 OTTHUMG00000167024 uc001njt.3 M86737 NM_003146 CCDS7952 Q08945 1372440 MGI:107912 RGD:621143 SSRP1 604328 +HGNC:11328 SSSCA1 Sjogren syndrome/scleroderma autoantigen 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 p27 Sjogren's syndrome/scleroderma autoantigen 1 1999-12-15 2007-10-04 2016-06-17 10534 ENSG00000173465 OTTHUMG00000166388 uc001oek.4 AB001740 NM_006396 "CCDS8104|CCDS76434" O60232 9486406 MGI:1913482 RGD:1593467 SSSCA1 606044 +HGNC:27384 SSSCA1-AS1 SSSCA1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 11q13.1 11q13.1 2013-05-31 2013-05-31 2013-05-31 254100 ENSG00000260233 OTTHUMG00000166387 NR_038923 +HGNC:11329 SST somatostatin protein-coding gene gene with protein product Approved 3q27.3 03q27.3 SMST "somatostatin-14|somatostatin-28|prepro-somatostatin" Endogenous ligands 542 2001-06-22 2016-10-05 6750 ENSG00000157005 OTTHUMG00000156462 uc003frn.4 NM_001048 CCDS3288 P61278 "6126875|6142531" MGI:98326 RGD:3761 SST 182450 +HGNC:11330 SSTR1 somatostatin receptor 1 protein-coding gene gene with protein product Approved 14q13 14q13 Somatostatin receptors 257 1992-08-25 2015-08-26 6751 ENSG00000139874 OTTHUMG00000140249 uc001wul.2 NM_001049 CCDS9666 P30872 8449518 MGI:98327 RGD:3762 SSTR1 182451 objectId:355 +HGNC:11331 SSTR2 somatostatin receptor 2 protein-coding gene gene with protein product Approved 17q24 17q24 Somatostatin receptors 257 1992-08-25 2015-08-26 6752 ENSG00000180616 OTTHUMG00000178343 uc002jje.4 NM_001050 CCDS11691 P30874 8449518 MGI:98328 RGD:3763 SSTR2 182452 objectId:356 +HGNC:11332 SSTR3 somatostatin receptor 3 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 Somatostatin receptors 257 1992-08-25 2015-09-09 6753 ENSG00000278195 OTTHUMG00000150537 uc032qnp.2 XM_011530349 CCDS13944 P32745 8449518 MGI:98329 RGD:620308 SSTR3 182453 objectId:357 +HGNC:11333 SSTR4 somatostatin receptor 4 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 Somatostatin receptors 257 1993-07-22 2015-08-26 6754 ENSG00000132671 OTTHUMG00000032054 uc002wsr.3 NM_001052 CCDS42856 P31391 8483934 MGI:105372 RGD:3764 SSTR4 182454 objectId:358 +HGNC:11334 SSTR5 somatostatin receptor 5 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Somatostatin receptors 257 1993-05-12 2015-08-26 6755 ENSG00000162009 OTTHUMG00000047842 uc002ckq.4 D16827 NM_001053 CCDS10429 P35346 7607700 MGI:894282 RGD:3765 SSTR5 182455 objectId:359 +HGNC:26502 SSTR5-AS1 SSTR5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 SSTR5 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 146336 ENSG00000261713 OTTHUMG00000172831 uc059oui.1 AK056814 NR_02724 +HGNC:25016 SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase protein-coding gene gene with protein product Approved 1p36.33 01p36.33 HSPC182 "Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)|SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae)" Serine/threonine phosphatases 814 2005-05-09 2015-08-13 2016-10-05 29101 ENSG00000160075 OTTHUMG00000000576 uc001agd.4 AJ276409 NM_014188 CCDS32 Q9NP77 "15125841|15659578" MGI:1916241 RGD:1307854 SSU72 +HGNC:43620 SSU72P1 SSU72 pseudogene 1 pseudogene pseudogene Approved Xq23 Xq23 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 1 2011-12-02 2013-10-18 2013-10-18 286528 ENSG00000226547 OTTHUMG00000022221 NG_022691 PGOHUM00000241956 +HGNC:43621 SSU72P2 SSU72 pseudogene 2 pseudogene pseudogene Approved 11p15.4 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 2 2011-12-02 2013-10-18 2013-10-18 390031 ENSG00000255194 OTTHUMG00000165696 NG_008908 PGOHUM00000257797 +HGNC:43622 SSU72P3 SSU72 pseudogene 3 pseudogene pseudogene Approved 11p15.4 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 3 2011-12-02 2013-10-18 2013-10-18 143506 ENSG00000186232 OTTHUMG00000165699 NG_008900 PGOHUM00000257869 +HGNC:43623 SSU72P4 SSU72 pseudogene 4 pseudogene pseudogene Approved 11p15.4 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 4 2011-12-02 2013-10-18 2013-10-18 441584 ENSG00000186223 OTTHUMG00000165698 NG_008912 PGOHUM00000257798 +HGNC:43624 SSU72P5 SSU72 pseudogene 5 pseudogene pseudogene Approved 11p15.4 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 5 2011-12-02 2013-10-18 2013-10-18 196120 ENSG00000237565 OTTHUMG00000165695 NG_008904 PGOHUM00000257868 +HGNC:43625 SSU72P6 SSU72 pseudogene 6 pseudogene pseudogene Approved 11p15.4 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 6 2011-12-02 2013-10-18 2013-10-18 643263 ENSG00000236175 OTTHUMG00000165697 NG_008911 PGOHUM00000242562 +HGNC:43626 SSU72P7 SSU72 pseudogene 7 pseudogene pseudogene Approved 11p15.4 11p15.4 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 7 2011-12-02 2013-10-18 2013-10-18 390033 ENSG00000229542 OTTHUMG00000165700 NG_008909 PGOHUM00000257799 +HGNC:43627 SSU72P8 SSU72 pseudogene 8 pseudogene pseudogene Approved 7q31.33 07q31.33 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) pseudogene 8 2011-12-02 2013-10-18 2013-10-18 136157 ENSG00000230268 OTTHUMG00000157318 NG_012760 PGOHUM00000250964 +HGNC:24809 SSUH2 ssu-2 homolog (C. elegans) protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "fls485|ssu-2" C3orf32 chromosome 3 open reading frame 32 2005-12-30 2012-11-05 2012-11-05 2014-11-19 51066 ENSG00000125046 OTTHUMG00000122075 uc003bqy.5 AB024705 NM_015931 "CCDS2568|CCDS58815" Q9Y2M2 20205943 MGI:2443733 RGD:1562010 SSUH2 +HGNC:11335 SSX1 SSX family member 1 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 CT5.1 cancer/testis antigen family 5, member 1 synovial sarcoma, X breakpoint 1 1995-07-06 2016-05-20 2016-05-20 6756 ENSG00000126752 OTTHUMG00000021488 uc004djb.2 BC001003 NM_005635 CCDS14290 Q16384 7655467 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SSX1 SSX1 312820 119874 +HGNC:11336 SSX2 SSX family member 2 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "HOM-MEL-40|HD21|MGC3884|MGC15364|MGC119055|CT5.2a" "sarcoma, synovial, X-chromosome-related 2|synovial sarcoma, X breakpoint 2B|synovial sarcoma, X breakpoint 2, isoform b|cancer/testis antigen family 5, member 2a" SSX synovial sarcoma, X breakpoint 2 1995-03-06 2016-05-20 2016-05-20 6757 ENSG00000241476 OTTHUMG00000022697 uc004dqz.3 Z49105 NM_003147 "CCDS14344|CCDS14345" Q16385 8840996 SSX2 300192 158446 +HGNC:22263 SSX2B SSX family member 2B protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 CT5.2b cancer/testis antigen family 5, member 2b synovial sarcoma, X breakpoint 2B 2007-08-03 2016-05-20 2016-05-20 727837 ENSG00000268447 OTTHUMG00000021593 uc064zil.1 NM_001278701 "CCDS48129|CCDS65267" Q16385 SSX2B +HGNC:16509 SSX2IP SSX family member 2 interacting protein protein-coding gene gene with protein product Approved 1p22.3 01p22.3 hMsd1 synovial sarcoma, X breakpoint 2 interacting protein 2001-11-12 2016-05-20 2016-09-26 117178 ENSG00000117155 OTTHUMG00000009926 uc001dkj.4 NM_014021 "CCDS699|CCDS53337" Q9Y2D8 MGI:2139150 RGD:708490 SSX2IP 608690 +HGNC:11337 SSX3 SSX family member 3 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 CT5.3 synovial sarcoma, X breakpoint 3 1999-06-10 2016-05-20 2016-05-20 10214 ENSG00000165584 OTTHUMG00000021489 uc004djd.3 U90840 NM_021014 CCDS14291 Q99909 "8697803|9378559" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SSX3 SSX3 300325 +HGNC:11338 SSX4 SSX family member 4 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 CT5.4 synovial sarcoma, X breakpoint 4 1996-03-12 2016-05-20 2016-05-20 6759 ENSG00000268009 OTTHUMG00000022698 uc004djf.3 XM_017029759 "CCDS35240|CCDS43934" O60224 MGI:2446771 SSX4 300326 +HGNC:16880 SSX4B SSX family member 4B protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OTTHUMT00000056510 synovial sarcoma, X breakpoint 4B 2005-03-22 2016-05-20 2016-05-20 548313 ENSG00000269791 OTTHUMG00000021497 uc004djh.3 XM_017029613 "CCDS35241|CCDS43935" O60224 MGI:2446771 SSX4B +HGNC:11339 SSX5 SSX family member 5 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 synovial sarcoma, X breakpoint 5 1996-03-12 2016-05-20 2016-05-20 6758 ENSG00000165583 OTTHUMG00000021471 uc004diz.1 BC016640 NM_021015 "CCDS14288|CCDS14289" O60225 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SSX5 SSX5 300327 +HGNC:19652 SSX6 SSX family member 6, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 "psiSSX2|SSX6P" SSXP2 "SSX family pseudogene 2|synovial sarcoma, X breakpoint 6|synovial sarcoma, X breakpoint 6 (pseudogene)" 2002-11-19 2016-05-20 2016-05-20 280657 ENSG00000171483 OTTHUMG00000021464 BK000686 NR_028366 Q7RTT6 12216073 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SSX6 SSX6 300541 +HGNC:19653 SSX7 SSX family member 7 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 synovial sarcoma, X breakpoint 7 2002-11-19 2016-05-20 2016-10-05 280658 ENSG00000187754 OTTHUMG00000021572 uc004dqx.2 BK000687 NM_173358 CCDS14343 Q7RTT5 12216073 SSX7 300542 +HGNC:19654 SSX8 SSX family member 8 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 synovial sarcoma, X breakpoint 8 2002-11-19 2016-05-20 2016-05-20 280659 ENSG00000157965 OTTHUMG00000021573 BK000688 NM_174961 Q7RTT4 12216073 300543 PGOHUM00000305073 +HGNC:19655 SSX9 SSX family member 9, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 SSX9P "synovial sarcoma, X breakpoint 9|SSX family member 9" 2002-11-19 2016-07-19 2016-07-19 280660 ENSG00000204648 OTTHUMG00000021490 BK000689 NR_073393 Q7RTT3 12216073 SSX9 300544 +HGNC:30637 SSXP1 SSX family pseudogene 1 pseudogene pseudogene Approved Xp11.22 Xp11.22 psiSSX1 2008-04-17 2014-02-12 100996564 ENSG00000197185 OTTHUMG00000021582 NG_033927 12216073 +HGNC:30640 SSXP3 SSX family pseudogene 3 pseudogene pseudogene Approved Xp11.23 Xp11.23 psiSSX3 2008-04-17 2013-09-23 326341 ENSG00000225198 OTTHUMG00000021468 NG_002580 +HGNC:30641 SSXP4 SSX family pseudogene 4 pseudogene pseudogene Approved Xp11.22 Xp11.22 psiSSX4 SSX10 synovial sarcoma, X breakpoint 10 2008-04-17 2013-04-26 326337 ENSG00000185319 OTTHUMG00000021581 NG_002578 12216073 PGOHUM00000250071 +HGNC:30642 SSXP5 SSX family pseudogene 5 pseudogene pseudogene Approved Xp11.22 Xp11.22 psiSSX5 2008-04-17 2013-09-23 326339 ENSG00000225508 OTTHUMG00000021574 NG_002579 12216073 PGOHUM00000241778 +HGNC:30643 SSXP6 SSX family pseudogene 6 pseudogene pseudogene Approved Xp11.23 Xp11.23 psiSSX6 2008-04-17 2013-09-23 326587 NG_002585 +HGNC:30644 SSXP7 SSX family pseudogene 7 pseudogene pseudogene Approved Xp11.23 Xp11.23 psiSSX7 2008-04-17 2013-09-23 326590 NG_002587 12216073 +HGNC:30199 SSXP8 SSX family pseudogene 8 pseudogene pseudogene Approved Xp11.23 Xp11.23 psiSSX8 2008-04-17 2013-09-23 326585 NG_002583 12216073 +HGNC:30645 SSXP9 SSX family pseudogene 9 pseudogene pseudogene Approved Xp11.23 Xp11.23 psiSSX9 2008-04-17 2013-09-23 326586 ENSG00000227302 OTTHUMG00000021484 NG_002584 12216073 PGOHUM00000250069 +HGNC:30638 SSXP10 SSX family pseudogene 10 pseudogene pseudogene Approved 6q22.31 06q22.31 psiSSX10 2008-04-17 2014-11-19 100287603 ENSG00000217330 OTTHUMG00000016373 NG_022942 12216073 PGOHUM00000243755 +HGNC:11347 ST2 suppression of tumorigenicity 2 phenotype phenotype only Approved 11p14.3-p12 11p14.3-p12 1988-08-31 2003-07-30 6761 185440 +HGNC:11348 ST3 suppression of tumorigenicity 3 phenotype phenotype only Approved 11q13-q23 11q13-q23 1990-02-22 2003-07-30 6762 191181 +HGNC:10862 ST3GAL1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 "ST3O|SIATFL|ST3GalA.1" ST3Gal I SIAT4A sialyltransferase 4A (beta-galactosidase alpha-2,3-sialytransferase) Sialyltransferases 438 1994-09-12 2005-02-07 2003-01-14 2014-11-19 6482 ENSG00000008513 OTTHUMG00000164534 uc064qlo.1 L29555 NM_003033 CCDS6373 Q11201 "10504389|7655169" MGI:98304 RGD:1309373 ST3GAL1 607187 2.4.99.4 +HGNC:45174 ST3GAL1P1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 pseudogene 1 pseudogene pseudogene Approved 4q13.2 04q13.2 2013-03-01 2013-03-01 100421804 ENSG00000250656 OTTHUMG00000160778 NG_025114 PGOHUM00000245551 +HGNC:10863 ST3GAL2 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "ST3GALII|ST3GalA.2" SIAT4B sialyltransferase 4B (beta-galactosidase alpha-2,3-sialytransferase) Sialyltransferases 438 1994-09-12 2005-02-07 2003-01-14 2016-10-05 6483 ENSG00000157350 OTTHUMG00000137580 uc002eyx.2 U63090 NM_006927 CCDS10890 Q16842 "9266697|8920913" MGI:99427 RGD:68413 ST3GAL2 607188 2.4.99.4 +HGNC:10866 ST3GAL3 ST3 beta-galactoside alpha-2,3-sialyltransferase 3 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 ST3Gal III "SIAT6|MRT12" "sialyltransferase 6 (N-acetyllacosaminide alpha 2,3-sialyltransferase)|mental retardation, non-syndromic, autosomal recessive, 12" Sialyltransferases 438 1994-09-20 2005-02-07 2005-02-07 2014-11-18 6487 ENSG00000126091 OTTHUMG00000007561 uc001ckc.5 L23768 NM_174963 "CCDS492|CCDS493|CCDS494|CCDS495|CCDS496|CCDS497|CCDS498|CCDS499|CCDS500|CCDS53310|CCDS57988|CCDS57989|CCDS57990|CCDS57991|CCDS57992|CCDS57993|CCDS57994" Q11203 "8333853|21907012" MGI:1316659 RGD:68414 ST3GAL3 606494 285223 2.4.99.6 +HGNC:10864 ST3GAL4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "STZ|SAT3|FLJ11867" ST3Gal IV "CGS23|SIAT4|NANTA3|SIAT4C" sialyltransferase 4C (beta-galactosidase alpha-2,3-sialytransferase) Sialyltransferases 438 1988-05-11 2005-02-07 2003-01-14 2016-10-05 6484 ENSG00000110080 OTTHUMG00000165830 uc058izf.1 X74570 NM_006278 "CCDS8474|CCDS58193|CCDS58194" Q11206 "8557707|8288606" MGI:1316743 RGD:1303068 ST3GAL4 104240 2.4.99.4 +HGNC:48645 ST3GAL4-AS1 ST3GAL4 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 11q24.2 11q24.2 "DCPS-AS1|FLJ39051" 2013-05-31 2013-05-31 399972 ENSG00000280832 OTTHUMG00000189590 NR_033839 +HGNC:10872 ST3GAL5 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "ST3GalV|SIATGM3S" SIAT9 sialyltransferase 9 (CMP-NeuAc:lactosylceramide alpha-2,3-sialyltransferase; GM3 synthase) Sialyltransferases 438 1999-06-17 2005-02-07 2005-02-07 2014-11-19 8869 ENSG00000115525 OTTHUMG00000130171 uc002sqq.2 AB018356 NM_003896 "CCDS1986|CCDS42705" Q9UNP4 9822625 MGI:1339963 RGD:620875 ST3GAL5 604402 181124 2.4.99.9 +HGNC:51129 ST3GAL5-AS1 ST3GAL5 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 2p11.2 02p11.2 2014-07-30 2014-07-30 101928113 ENSG00000232504 OTTHUMG00000153169 NR_110569 +HGNC:45175 ST3GAL5P1 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 pseudogene 1 pseudogene pseudogene Approved 5p13.3 05p13.3 2013-03-01 2013-03-01 100421795 NG_024584 PGOHUM00000235182 +HGNC:18080 ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding gene gene with protein product Approved 3q12.1 03q12.1 ST3GALVI SIAT10 sialyltransferase 10 (alpha-2,3-sialyltransferase VI) Sialyltransferases 438 2003-12-05 2005-02-07 2005-02-07 2016-10-05 10402 ENSG00000064225 OTTHUMG00000159047 uc003dtc.4 AF119391 NM_006100 "CCDS2933|CCDS59452|CCDS74968" Q9Y274 10206952 MGI:1888707 RGD:1303279 ST3GAL6 607156 2.4.99.- +HGNC:40828 ST3GAL6-AS1 ST3GAL6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q12.1 03q12.1 ST3GAL6 antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874207 ENSG00000239445 OTTHUMG00000159044 uc031sas.2 NR_046683 +HGNC:11350 ST5 suppression of tumorigenicity 5 protein-coding gene gene with protein product Approved 11p15 11p15 "HTS1|DENND2B|p126" DENN/MADD domain containing 2B DENN/MADD domain containing 504 1992-07-09 2015-09-08 6764 ENSG00000166444 OTTHUMG00000165835 uc001mgv.4 U15131 NM_005418 "CCDS7791|CCDS7792" P78524 1390339 MGI:108517 RGD:1308995 ST5 140750 +HGNC:10860 ST6GAL1 ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 ST6Gal I SIAT1 "sialyltransferase 1 (beta-galactoside alpha-2,6-sialytransferase)|ST6 beta-galactosamide alpha-2,6-sialyltranferase 1|ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1" Sialyltransferases 438 1992-04-10 2005-02-07 2016-04-29 2016-04-29 6480 ENSG00000073849 OTTHUMG00000156500 uc003frb.4 X62822 NM_173216 "CCDS3285|CCDS46973" P15907 2408023 MGI:108470 RGD:3676 ST6GAL1 109675 2.4.99.1 +HGNC:10861 ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding gene gene with protein product Approved 2q12.3 02q12.3 "KIAA1877|St6gal2|St6GalII" SIAT2 "sialyltransferase 2 (monosialoganglioside sialyltransferase)|ST6 beta-galactosamide alpha-2,6-sialyltranferase 2" Sialyltransferases 438 1994-09-20 2005-02-07 2016-04-29 2016-04-29 84620 ENSG00000144057 OTTHUMG00000130923 uc002tdr.3 AB059555 NM_032528 "CCDS2073|CCDS46380" Q96JF0 MGI:2445190 RGD:1559663 ST6GAL2 608472 2.4.99.2 +HGNC:41380 ST6GAL2-IT1 ST6GAL2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q12.2 02q12.2 ST6GAL2 intronic transcript 1 (non-protein coding) 2011-08-23 2015-02-25 2015-02-25 100874354 ENSG00000238250 OTTHUMG00000153201 uc061mqq.1 +HGNC:23614 ST6GALNAC1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 ST6GalNAcI SIAT7A "sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) A|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1|ST6 GalNAc alpha-2,6-sialyltransferase 1" Sialyltransferases 438 2003-12-05 2005-02-07 2016-04-29 2016-10-05 55808 ENSG00000070526 OTTHUMG00000180369 uc002jsh.5 Y11339 NM_018414 CCDS11748 Q9NSC7 MGI:1341826 RGD:1562048 ST6GALNAC1 610138 2.4.99.3 +HGNC:10867 ST6GALNAC2 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "ST6GalNAII|STHM" "SIAT7|SIAT7B|SIATL1" "sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)|sialyltransferase-like 1|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2|ST6 GalNAc alpha-2,6-sialyltransferase 2" Sialyltransferases 438 1994-09-20 2005-02-07 2016-04-29 2016-04-29 10610 ENSG00000070731 OTTHUMG00000180301 uc002jsg.5 U14550 NM_006456 CCDS11747 Q9UJ37 11984005 MGI:107553 RGD:1560747 ST6GALNAC2 610137 2.4.99.7 +HGNC:45160 ST6GALNAC2P1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 pseudogene 1 pseudogene pseudogene Approved 2p11.2 02p11.2 "ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 pseudogene 1|ST6 GalNAc alpha-2,6-sialyltransferase 2 pseudogene 1" 2013-02-26 2016-04-29 2016-04-29 100422716 ENSG00000228902 OTTHUMG00000152973 NG_023578 PGOHUM00000240117 +HGNC:19343 ST6GALNAC3 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 ST6GALNAC III SIAT7C "sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) C|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3|ST6 GalNAc alpha-2,6-sialyltransferase 3" Sialyltransferases 438 2003-12-05 2005-02-07 2016-04-29 2016-04-29 256435 ENSG00000184005 OTTHUMG00000009615 uc001dhh.3 NM_152996 CCDS672 Q8NDV1 MGI:1341828 RGD:3677 ST6GALNAC3 610133 2.4.99.- +HGNC:17846 ST6GALNAC4 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "ST6GALNACIV|SIAT3C" SIAT7D "sialyltransferase 7D ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4|ST6 GalNAc alpha-2,6-sialyltransferase 4" Sialyltransferases 438 2001-12-19 2005-02-07 2016-04-29 2016-10-05 27090 ENSG00000136840 OTTHUMG00000020724 uc004bss.3 AB035172 NM_175040 CCDS6883 Q9H4F1 "10207017|11062056" MGI:1341894 RGD:1303005 ST6GALNAC4 606378 2.4.99.7 +HGNC:39660 ST6GALNAC4P1 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 "ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 pseudogene 1|ST6 GalNAc alpha-2,6-sialyltransferase 4 pseudogene 1" 2011-03-18 2016-04-29 2016-04-29 100874524 ENSG00000233469 OTTHUMG00000016501 NG_032337 PGOHUM00000248313 +HGNC:19342 ST6GALNAC5 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "MGC3184|ST6GalNAcV" SIAT7E "sialyltransferase 7 ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) E|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5|ST6 GalNAc alpha-2,6-sialyltransferase 5" Sialyltransferases 438 2003-12-05 2005-02-07 2016-04-29 2016-04-29 81849 ENSG00000117069 OTTHUMG00000009687 uc001dhi.4 NM_030965 CCDS673 Q9BVH7 "10521438|10601645" MGI:1349471 RGD:1564252 ST6GALNAC5 610134 2.4.99.- +HGNC:23364 ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 ST6GALNACVI SIAT7F "sialytransferase 7 ((alpha-N-acetylneuraminyl 2,3-betagalactosyl-1,3)-N-acetyl galactosaminide alpha-2,6-sialytransferase) F|ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6|ST6 GalNAc alpha-2,6-sialyltransferase 6" Sialyltransferases 438 2004-05-11 2005-02-07 2016-04-29 2016-10-05 30815 ENSG00000160408 OTTHUMG00000020718 uc004bso.3 BC006564 NM_013443 "CCDS6882|CCDS69668|CCDS69669|CCDS75908" Q969X2 12668675 MGI:1355316 RGD:1303196 ST6GALNAC6 610135 2.4.99.- +HGNC:11351 ST7 suppression of tumorigenicity 7 protein-coding gene gene with protein product Approved 7q31.2 07q31.2 "TSG7|SEN4|ETS7q|HELG|RAY1|FAM4A" FAM4A1 1999-05-07 2014-11-19 7982 ENSG00000004866 OTTHUMG00000023888 uc003vio.4 AJ277291 NM_021908 "CCDS5769|CCDS5770" Q9NRC1 "8105370|8938430" MGI:1927450 RGD:1303148 ST7 600833 +HGNC:16000 ST7-AS1 ST7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q31.2 07q31.2 ST7AS1 ST7 overlapping transcript antisense 1 ST7OT1 "ST7 overlapping transcript 1 (antisense non-coding RNA)|ST7 overlapping transcript 1 (non-protein coding)|ST7 antisense RNA 1 (non-protein coding)" 2001-07-13 2011-04-28 2012-08-15 2014-11-19 93653 ENSG00000227199 OTTHUMG00000039524 uc003vim.5 AF400039 NR_002330 12213198 +HGNC:16044 ST7-AS2 ST7 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 7q31.2 07q31.2 ST7AS2 ST7 overlapping transcript antisense 2 ST7OT2 "ST7 overlapping transcript 2 (antisense non-coding RNA)|ST7 overlapping transcript 2 (non-protein coding)|ST7 antisense RNA 2 (non-protein coding)" 2001-07-13 2011-04-28 2012-08-15 2014-11-19 93654 ENSG00000226367 OTTHUMG00000039525 uc003viw.5 AF400043 NR_002331 12213198 +HGNC:16045 ST7-OT3 ST7 overlapping transcript 3 non-coding RNA RNA, long non-coding Approved 7q31.3 07q31.3 NCRNA00026 non-protein coding RNA 26 ST7OT3 ST7 overlapping transcript 3 (non-protein coding) 2001-07-13 2011-08-19 2014-06-02 2014-11-18 93655 AF400044 NR_002332 12213198 +HGNC:18835 ST7-OT4 ST7 overlapping transcript 4 other unknown Approved 7q31.2 07q31.2 NCRNA00042 non-protein coding RNA 42 ST7OT4 ST7 overlapping transcript 4 (non-protein coding) 2003-02-25 2011-08-19 2013-03-06 2013-03-06 338069 ENSG00000214188 OTTHUMG00000063631 uc064hil.1 BM413623 NR_002329 12213198 +HGNC:18441 ST7L suppression of tumorigenicity 7 like protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "FLJ20284|STLR|ST7R|FAM4B" 2002-04-26 2016-10-05 54879 ENSG00000007341 OTTHUMG00000011753 uc001eci.4 AB081317 XM_011541627 "CCDS848|CCDS849|CCDS850|CCDS852|CCDS76189" Q8TDW4 12012006 MGI:2386964 RGD:1359336 ST7L +HGNC:11352 ST8 suppression of tumorigenicity 8 (ovarian) phenotype phenotype only Approved 6q25-q27 06q25-q27 OVCS 1997-07-11 2003-08-04 6765 1394208 +HGNC:10869 ST8SIA1 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding gene gene with protein product Approved 12p12.1 12p12.1 ST8Sia I "SIAT8|SIAT8A" "sialyltransferase 8 (alpha-N-acetylneuraminate: alpha-2,8-sialytransferase, GD3 synthase) A|ST8 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase 1" Sialyltransferases 438 1994-09-12 2005-02-07 2016-04-29 2016-10-05 6489 ENSG00000111728 OTTHUMG00000169098 uc001rfo.4 L32867 NM_003034 CCDS8697 Q92185 7901202 MGI:106011 RGD:3679 ST8SIA1 601123 2.4.99.8 +HGNC:10870 ST8SIA2 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "STX|ST8SIA-II|HsT19690" SIAT8B "sialyltransferase 8 (alpha-2, 8-sialytransferase) B|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2|ST8 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase 2" Sialyltransferases 438 1999-06-11 2005-02-07 2016-04-29 2016-10-05 8128 ENSG00000140557 OTTHUMG00000149843 uc002bra.4 U33551 NM_006011 "CCDS10372|CCDS81919" Q92186 7559389 MGI:106020 RGD:621843 ST8SIA2 602546 +HGNC:14269 ST8SIA3 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding gene gene with protein product Approved 18q21.31 18q21.31 ST8Sia III SIAT8C "sialyltransferase 8C (alpha2,3Galbeta1,4GlcNAcalpha 2,8-sialyltransferase)|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3|ST8 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase 3" Sialyltransferases 438 2000-12-19 2005-02-07 2016-04-29 2016-04-29 51046 ENSG00000177511 OTTHUMG00000180101 uc002lgn.4 AF004668 NM_015879 CCDS32834 O43173 MGI:106019 RGD:3680 ST8SIA3 609478 2.4.99.- +HGNC:10871 ST8SIA4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding gene gene with protein product Approved 5q21.1 05q21.1 "PST|PST1" ST8Sia IV SIAT8D "sialyltransferase 8 (alpha-2, 8-polysialytransferase) D|ST8 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase 4" Sialyltransferases 438 1999-06-11 2005-02-07 2016-04-29 2016-10-05 7903 ENSG00000113532 OTTHUMG00000128727 uc003knk.5 L41680 NM_005668 "CCDS4091|CCDS47252" Q92187 7624364 MGI:106018 RGD:621845 ST8SIA4 602547 2.4.99.- +HGNC:17827 ST8SIA5 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 ST8Sia V SIAT8E "sialyltransferase 8E (alpha-2, 8-polysialytransferase)|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5|ST8 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase 5" Sialyltransferases 438 2002-01-29 2005-02-07 2016-04-29 2016-10-05 29906 ENSG00000101638 OTTHUMG00000132643 uc002lcj.2 U91641 NM_013305 "CCDS11930|CCDS77183|CCDS77184" O15466 9199191 MGI:109243 RGD:1302934 ST8SIA5 607162 2.4.99.- +HGNC:23317 ST8SIA6 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding gene gene with protein product Approved 10p12.33 10p12.33 ST8Sia VI SIAT8F "sialyltransferase 8F (alpha-2, 8-sialyltransferase)|ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6|ST8 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase 6" Sialyltransferases 438 2004-03-22 2005-02-07 2016-04-29 2016-10-05 338596 ENSG00000148488 OTTHUMG00000017748 uc001ipd.4 NM_001004470 CCDS31158 P61647 11980897 MGI:2386797 RGD:1303161 ST8SIA6 610139 2.4.99.- +HGNC:44880 ST8SIA6-AS1 ST8SIA6 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p12.33 10p12.33 2012-12-11 2012-12-11 100128098 ENSG00000204832 OTTHUMG00000017746 uc001ipf.2 NR_034129 +HGNC:11341 ST11 suppression of tumorigenicity 11 (pancreas) phenotype phenotype only Approved 3p 03p PETS1 Pancreatic endocrine tumor suppressor 1998-10-14 2011-02-10 8466 9218518 602011 +HGNC:11343 ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "SNC6|HSPABP1|HIP|P48|FAM10A1" progesterone receptor-associated p48 protein suppression of tumorigenicity 13 (colon carcinoma) (Hsp70-interacting protein) Tetratricopeptide repeat domain containing 769 1998-05-05 2001-11-29 2014-11-19 6767 ENSG00000100380 OTTHUMG00000151201 uc003aze.5 NM_003932 CCDS14006 P50502 "9925927|8721986" MGI:1917606 RGD:621312 ST13 606796 +HGNC:38715 ST13P1 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 1 pseudogene pseudogene Approved 2p25.1 02p25.1 2010-08-11 2014-11-19 729992 XR_038318 PGOHUM00000240582 +HGNC:38716 ST13P2 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 2 pseudogene pseudogene Approved 2q32.1 02q32.1 2010-08-11 2014-11-19 344328 ENSG00000235616 OTTHUMG00000154284 XR_017370 PGOHUM00000241043 +HGNC:18552 ST13P3 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 3 pseudogene pseudogene Approved 12q24.11 12q24.11 FAM10A3P FAM10A3 family with sequence similarity 10, member A3 2002-05-03 2010-08-11 2010-08-11 2014-11-19 144638 ENSG00000257773 OTTHUMG00000169726 NG_004762 PGOHUM00000239914 +HGNC:18487 ST13P4 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 4 pseudogene pseudogene Approved 13q14.2 13q14.2 FAM10A4P FAM10A4 family with sequence similarity 10, member A4 pseudogene 2002-05-03 2010-08-11 2010-08-11 2016-10-05 145165 ENSG00000232150 OTTHUMG00000016930 XM_015959 NR_002183 Q8IZP2 PGOHUM00000248593 +HGNC:18556 ST13P5 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 5 pseudogene pseudogene Approved 11p15.1 11p15.1 FAM10A5 "family with sequence similarity 10, member A5|family with sequence similarity 10, member A5 pseudogene" 2002-05-03 2010-08-11 2010-08-11 2010-08-11 144106 ENSG00000212789 OTTHUMG00000165956 XM_016195 NG_005653 Q8NFI4 12079276 +HGNC:18557 ST13P6 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 6 pseudogene pseudogene Approved 8q24.22 08q24.22 FAM10A6P FAM10A6 family with sequence similarity 10, member A6 2002-05-03 2010-08-11 2010-08-11 2014-11-19 157530 ENSG00000225259 OTTHUMG00000164533 NR_002199 +HGNC:18558 ST13P7 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 7 pseudogene pseudogene Approved 7q33 07q33 FAM10A7P FAM10A7 "family with sequence similarity 10, member A7|family with sequence similarity 10, member A7 (pseudogene)" 2002-05-03 2010-08-11 2010-08-11 2014-11-19 155019 NR_002198 PGOHUM00000232999 +HGNC:38743 ST13P8 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 8 pseudogene pseudogene Approved 12q14.1 12q14.1 2010-08-11 2014-11-19 338805 NG_021690 +HGNC:38744 ST13P9 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 9 pseudogene pseudogene Approved 12p11.1 12p11.1 2010-08-11 2014-11-18 390301 NG_021711 PGOHUM00000239735 +HGNC:38745 ST13P10 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 10 pseudogene pseudogene Approved 11q23.1 11q23.1 2010-08-11 2014-11-19 399950 ENSG00000213234 NG_021804 PGOHUM00000242489 +HGNC:38746 ST13P11 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 11 pseudogene pseudogene Approved 11q21 11q21 2010-08-11 2014-11-19 728162 ENSG00000213368 OTTHUMG00000167837 NG_021831 PGOHUM00000242862 +HGNC:38787 ST13P12 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 12 pseudogene pseudogene Approved 5q14.2 05q14.2 2010-08-11 2014-11-19 100127911 ENSG00000248400 OTTHUMG00000162560 NG_021887 PGOHUM00000235680 +HGNC:38788 ST13P13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 13 pseudogene pseudogene Approved 10q24.33 10q24.33 2010-08-11 2014-11-19 401648 ENSG00000229256 OTTHUMG00000018979 NG_022189 PGOHUM00000238909 +HGNC:38849 ST13P14 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 14 pseudogene pseudogene Approved 3p21.2 03p21.2 2010-08-17 2014-11-19 100422602 ENSG00000240959 OTTHUMG00000156852 NG_025579 PGOHUM00000237628 +HGNC:38850 ST13P15 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 15 pseudogene pseudogene Approved 3q24 03q24 2010-08-17 2014-11-19 100422603 ENSG00000243759 OTTHUMG00000159381 NG_025637 PGOHUM00000237802 +HGNC:38851 ST13P16 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 16 pseudogene pseudogene Approved 6q15 06q15 2010-08-17 2014-11-19 100422605 ENSG00000218698 OTTHUMG00000015176 NG_025845 PGOHUM00000243287 +HGNC:38859 ST13P17 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 17 pseudogene pseudogene Approved 7q34 07q34 2010-08-17 2014-11-19 442730 NG_022574 +HGNC:38861 ST13P18 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 18 pseudogene pseudogene Approved Xq21.32 Xq21.32 2010-08-17 2014-11-19 643310 ENSG00000234322 OTTHUMG00000021971 NG_022623 PGOHUM00000241448 +HGNC:38862 ST13P19 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 19 pseudogene pseudogene Approved 1q32.2 01q32.2 2010-08-17 2014-11-19 100131961 ENSG00000228110 OTTHUMG00000036393 NG_022751 +HGNC:38863 ST13P20 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 20 pseudogene pseudogene Approved 1p31.1 01p31.1 2010-08-17 2014-11-19 729828 ENSG00000215875 OTTHUMG00000009846 NG_022788 PGOHUM00000244776 +HGNC:38864 ST13P21 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 21 pseudogene pseudogene Approved 1p13.3 01p13.3 2010-08-17 2014-11-19 642818 ENSG00000227832 OTTHUMG00000011458 NG_022797 PGOHUM00000244835 +HGNC:38865 ST13P22 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) pseudogene 22 pseudogene pseudogene Approved 12q23.2 12q23.2 2010-09-27 2014-11-19 100874521 NG_032222 PGOHUM00000239567 +HGNC:16591 ST13P entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-07-27 +HGNC:11344 ST14 suppression of tumorigenicity 14 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "SNC19|HAI|MT-SP1|TMPRSS14" "epithin|matriptase" PRSS14 suppression of tumorigenicity 14 (colon carcinoma) Proteases, serine 738 1998-05-05 2015-11-20 2016-10-05 6768 ENSG00000149418 OTTHUMG00000165768 uc001qfw.4 AF118224 NM_021978 CCDS8487 Q9Y5Y6 "9925927|10373424" MGI:1338881 RGD:69288 ST14 606797 179413 S01.302 objectId:2418 +HGNC:18695 ST18 ST18, C2H2C-type zinc finger protein-coding gene gene with protein product Approved 8q11.23 08q11.23 "KIAA0535|ZC2HC10|NZF3|ZC2H2C3" neural zinc finger transcription factor 3 ZNF387 "zinc finger protein 387|suppression of tumorigenicity 18 (breast carcinoma) (zinc finger protein)|suppression of tumorigenicity 18, zinc finger" Zinc fingers C2H2C-type 1261 2002-05-28 2002-12-13 2016-05-04 2016-05-04 9705 ENSG00000147488 OTTHUMG00000164233 uc003xra.3 AB011107 XM_017014047 CCDS6149 O60284 15489893 MGI:2446700 RGD:708566 ST18 +HGNC:33520 ST20 suppressor of tumorigenicity 20 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 HCCS-1 2007-07-16 2014-11-19 400410 ENSG00000180953 OTTHUMG00000172078 uc059mie.1 AF249277 NM_001100879 CCDS42067 Q9HBF5 ST20 +HGNC:27521 ST20-AS1 ST20 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q25.1 15q25.1 FLJ33788 C15orf37 chromosome 15 open reading frame 37 2005-10-24 2014-10-01 2014-10-01 2014-10-01 283687 ENSG00000259642 OTTHUMG00000172079 AK091107 NR_028330 Q8NBB2 +HGNC:44655 ST20-MTHFS ST20-MTHFS readthrough other readthrough Approved 15q25.1 15q25.1 2012-12-12 2012-12-12 100528021 ENSG00000259332 OTTHUMG00000172077 uc059mhy.1 NM_001199760 CCDS58394 +HGNC:18628 STAB1 stabilin 1 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 "KIAA0246|STAB-1|FEEL-1|CLEVER-1|FELE-1|FEX1|SCARH2" "MS-1 antigen|fasciclin egf-like, laminin-type egf-like, and link domain-containing scavenger receptor-1|common lymphatic endothelial and vascular endothelial receptor-1" Scavenger receptors 1253 2002-09-11 2016-10-05 23166 ENSG00000010327 OTTHUMG00000158574 uc003dej.4 AJ275213 NM_015136 CCDS33768 Q9NY15 "11829752|12077138" MGI:2178742 RGD:2324745 STAB1 608560 +HGNC:18629 STAB2 stabilin 2 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "DKFZP434E0321|FELL|STAB-2|HARE|FEEL-2|SCARH1" hyaluronic acid receptor for endocytosis Scavenger receptors 1253 2002-09-11 2016-04-29 55576 ENSG00000136011 OTTHUMG00000170056 uc001tjw.4 AF160476 XR_429107 CCDS31888 Q8WWQ8 "11829752|12077138" MGI:2178743 RGD:628822 STAB2 608561 +HGNC:11353 STAC SH3 and cysteine rich domain protein-coding gene gene with protein product Approved 3p22.3-p22.2 03p22.3-p22.2 STAC1 src homology three (SH3) and cysteine rich domain 1997-08-28 2016-10-11 6769 ENSG00000144681 OTTHUMG00000130798 uc003cgh.2 D86640 NM_003149 "CCDS2662|CCDS77722" Q99469 "8954993|10393425" MGI:1201400 RGD:1305745 STAC 602317 +HGNC:23990 STAC2 SH3 and cysteine rich domain 2 protein-coding gene gene with protein product Approved 17q12 17q12 24b2 2004-05-19 2016-10-05 342667 ENSG00000141750 OTTHUMG00000179039 uc002hrs.4 AJ608762 NM_198993 CCDS11335 Q6ZMT1 MGI:2144518 RGD:1305548 STAC2 +HGNC:28423 STAC3 SH3 and cysteine rich domain 3 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 MGC2793 2004-05-19 2015-02-26 246329 ENSG00000185482 OTTHUMG00000171271 uc001snp.4 AK057013 NM_145064 "CCDS8936|CCDS66405|CCDS66406" Q96MF2 23818578 MGI:3606571 RGD:1308964 STAC3 615521 354117 +HGNC:11354 STAG1 stromal antigen 1 protein-coding gene gene with protein product Approved 3q22.3 03q22.3 "SA-1|SCC3A|SA1" Cohesin complex 1060 1999-04-29 2016-10-05 10274 ENSG00000118007 OTTHUMG00000159798 uc003era.2 Z75330 NM_005862 CCDS3090 Q8WVM7 9305759 MGI:1098658 RGD:1310744 STAG1 604358 +HGNC:11355 STAG2 stromal antigen 2 protein-coding gene gene with protein product Approved Xq25 Xq25 "SA-2|SCC3B|SA2" Cohesin complex 1060 1999-04-29 2016-10-12 10735 ENSG00000101972 OTTHUMG00000022725 uc004eub.5 Z75331 NM_006603 "CCDS14607|CCDS43990" Q8N3U4 9305759 MGI:1098583 RGD:1562042 LRG_782|http://www.lrg-sequence.org/LRG/LRG_782 STAG2 300826 +HGNC:11356 STAG3 stromal antigen 3 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 Cohesin complex 1060 1999-04-29 2016-10-05 10734 ENSG00000066923 OTTHUMG00000155183 uc032zyz.2 AJ007798 NM_012447 "CCDS34703|CCDS64730|CCDS75642" Q9UJ98 10698974 MGI:1355311 RGD:621333 STAG3 608489 400662 +HGNC:33852 STAG3L1 stromal antigen 3-like 1 (pseudogene) pseudogene pseudogene Approved 7q11.23 07q11.23 "DKFZP434A0131|STAG3L1P" stromal antigen 3-like 1 2007-11-20 2013-06-26 2014-11-19 54441 ENSG00000205583 OTTHUMG00000155940 NM_001002840 P0CL83 STAG3L1 +HGNC:33886 STAG3L2 stromal antigen 3-like 2 (pseudogene) pseudogene pseudogene Approved 7q11.23 07q11.23 "MGC131759|STAG3L2P" stromal antigen 3-like 2 2007-11-20 2013-06-26 2014-11-19 442582 ENSG00000277072 OTTHUMG00000156216 NM_001025202 P0CL84 STAG3L2 +HGNC:33845 STAG3L3 stromal antigen 3-like 3 (pseudogene) pseudogene pseudogene Approved 7q11.23 07q11.23 STAG3L3P stromal antigen 3-like 3 2007-11-20 2014-09-30 2014-11-19 442578 ENSG00000174353 OTTHUMG00000157064 NM_001013739 P0CL85 STAG3L3 +HGNC:33887 STAG3L4 stromal antigen 3-like 4 (pseudogene) pseudogene pseudogene Approved 7q11.21 07q11.21 "FLJ13195|STAG3L4P" stromal antigen 3-like 4 2007-11-20 2013-06-26 2014-11-18 64940 ENSG00000106610 OTTHUMG00000156920 NM_022906 Q8TBR4 STAG3L4 +HGNC:48896 STAG3L5P stromal antigen 3-like 5 pseudogene pseudogene pseudogene Approved 7q22.1 07q22.1 2013-06-26 2013-07-26 101735302 ENSG00000242294 OTTHUMG00000156884 NR_103720 +HGNC:48898 STAG3L5P-PVRIG2P-PILRB STAG3L5P-PVRIG2P-PILRB readthrough other readthrough Approved 7q22.1 07q22.1 2013-06-26 2015-07-22 101752399 ENSG00000272752 OTTHUMG00000186252 NR_036569 +HGNC:11357 STAM signal transducing adaptor molecule protein-coding gene gene with protein product Approved 10p12.33 10p12.33 STAM1 HSE1 homolog (S. cerevisiae) signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 ESCRT-0 1115 1998-10-14 2015-11-19 2016-10-05 8027 ENSG00000136738 OTTHUMG00000017749 uc001ipj.3 U43899 NM_003473 CCDS7122 Q92783 8780729 MGI:1329014 RGD:1564499 STAM 601899 +HGNC:49568 STAM-AS1 STAM antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 10p12.33 10p12.33 locus3182 locus 3182 2014-01-11 2014-01-15 102723166 ENSG00000260589 OTTHUMG00000176135 AK123677 NR_110370 23382218 +HGNC:11358 STAM2 signal transducing adaptor molecule 2 protein-coding gene gene with protein product Approved 2q23.3 02q23.3 Hbp HSE1 homolog (S. cerevisiae) signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 ESCRT-0 1115 1998-10-14 2015-11-19 2015-11-19 10254 ENSG00000115145 OTTHUMG00000131885 uc002tyc.4 AF042274 NM_005843 CCDS2196 O75886 "10899310|10993906" MGI:1929100 RGD:1311497 STAM2 606244 +HGNC:16950 STAMBP STAM binding protein protein-coding gene gene with protein product Approved 2p13.1 02p13.1 AMSH 2004-02-04 2016-10-05 10617 ENSG00000124356 OTTHUMG00000129817 uc061krg.1 BC007682 NM_006463 CCDS1929 O95630 10383417 MGI:1917777 RGD:619963 STAMBP 606247 353369 M67.006 +HGNC:24105 STAMBPL1 STAM binding protein like 1 protein-coding gene gene with protein product Approved 10q23.31 10q23.31 "AMSH-LP|KIAA1373|AMSH-FP|FLJ31524|ALMalpha|bA399O19.2" "associated molecule with the SH3 domain of STAM (AMSH) like protein|associated molecule with the SH3 domain of STAM (AMSH) - Family Protein" STAM binding protein-like 1 2005-10-25 2015-12-04 2016-10-05 57559 ENSG00000138134 OTTHUMG00000018702 uc001kfk.5 AB037794 NM_020799 CCDS7391 Q96FJ0 "12810066|12943674" MGI:1923880 RGD:1583011 STAMBPL1 612352 M67.003 +HGNC:24133 STAP1 signal transducing adaptor family member 1 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 "STAP-1|BRDG1" BCR downstream signaling 1 SH2 domain containing 741 2007-08-09 2007-08-09 2014-11-19 26228 ENSG00000035720 OTTHUMG00000129304 uc003hdf.3 AB023483 NM_012108 CCDS3515 Q9ULZ2 "10518561|10679268" MGI:1926193 RGD:1311584 STAP1 604298 +HGNC:30430 STAP2 signal transducing adaptor family member 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "STAP-2|BKS" 2007-08-09 2007-08-09 2014-11-19 55620 ENSG00000178078 OTTHUMG00000181884 uc060rvu.1 AJ245719 NM_001013841 "CCDS12128|CCDS45926" Q9UGK3 "10980601|11441184" MGI:2147039 RGD:1566020 STAP2 607881 +HGNC:11359 STAR steroidogenic acute regulatory protein protein-coding gene gene with protein product Approved 8p11.23 08p11.23 "StAR|STARD1" StAR related lipid transfer (START) domain containing 1 steroidogenic acute regulator StAR related lipid transfer domain containing 759 1996-04-24 2007-05-15 2016-10-05 6770 ENSG00000147465 OTTHUMG00000164058 uc003xkv.2 BC010550 NM_000349 CCDS6102 P49675 7761400 MGI:102760 RGD:3770 STAR 600617 119876 +HGNC:17579 STARD3 StAR related lipid transfer domain containing 3 protein-coding gene gene with protein product Approved 17q11-q12 17q11-q12 "es64|MLN64" START domain containing 3 StAR related lipid transfer domain containing 759 2002-10-08 2015-11-20 2015-11-20 10948 ENSG00000131748 OTTHUMG00000133213 uc002hsd.4 XM_011524211 "CCDS11341|CCDS54117|CCDS54118" Q14849 MGI:1929618 RGD:1549768 STARD3 607048 +HGNC:19169 STARD3NL STARD3 N-terminal like protein-coding gene gene with protein product Approved 7p14-p13 07p14-p13 "MENTHO|MGC3251" 2003-02-06 2016-07-27 83930 ENSG00000010270 OTTHUMG00000023659 uc003tfr.4 AJ492267 XM_017012692 CCDS5455 O95772 "12393907|24105263|27068960" MGI:1923455 RGD:1308633 STARD3NL 611759 +HGNC:18058 STARD4 StAR related lipid transfer domain containing 4 protein-coding gene gene with protein product Approved 5q22.1 05q22.1 START domain containing 4, sterol regulated StAR related lipid transfer domain containing 759 2002-01-24 2015-11-20 2016-10-05 134429 ENSG00000164211 OTTHUMG00000128793 uc003kph.2 AF480299 NM_139164 "CCDS4104|CCDS78046" Q96DR4 12011452 MGI:2156764 RGD:1309475 STARD4 607049 +HGNC:44117 STARD4-AS1 STARD4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q22.1 05q22.1 STARD4 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100505678 ENSG00000246859 OTTHUMG00000162858 uc021ych.1 CR749489 NR_040093 +HGNC:18065 STARD5 StAR related lipid transfer domain containing 5 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 MGC10327 START domain containing 5 StAR related lipid transfer domain containing 759 2002-01-24 2015-11-20 2016-10-05 80765 ENSG00000172345 OTTHUMG00000147342 uc002bgm.4 AF480304 XM_017022639 CCDS10318 Q9NSY2 12011452 MGI:2156765 RGD:1561783 STARD5 607050 +HGNC:18066 STARD6 StAR related lipid transfer domain containing 6 protein-coding gene gene with protein product Approved 18q21.2 18q21.2 START domain containing 6 StAR related lipid transfer domain containing 759 2002-01-24 2015-11-20 2015-11-20 147323 ENSG00000174448 OTTHUMG00000132702 uc060phn.1 AF480305 NM_139171 CCDS11955 P59095 12011452 MGI:2156774 RGD:1359639 STARD6 607051 +HGNC:18063 STARD7 StAR related lipid transfer domain containing 7 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 GTT1 START domain containing 7 StAR related lipid transfer domain containing 759 2002-01-24 2015-11-20 2016-10-05 56910 ENSG00000084090 OTTHUMG00000130457 uc002svm.6 AF270647 NM_020151 CCDS2017 Q9NQZ5 MGI:2139090 RGD:1307613 STARD7 616712 +HGNC:40827 STARD7-AS1 STARD7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q11.2 02q11.2 2013-10-14 2014-11-19 285033 ENSG00000204685 OTTHUMG00000155209 NR_046322 +HGNC:19161 STARD8 StAR related lipid transfer domain containing 8 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "KIAA0189|ARHGAP38" START domain containing 8 "Rho GTPase activating proteins|StAR related lipid transfer domain containing" "721|759" 2002-08-28 2015-11-20 2015-11-20 9754 ENSG00000130052 OTTHUMG00000021748 uc004dxb.4 D80011 NM_014725 "CCDS14390|CCDS48134" Q92502 8724849 MGI:2448556 RGD:1560770 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=STARD8 STARD8 300689 +HGNC:19162 STARD9 StAR related lipid transfer domain containing 9 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 "KIAA1300|KIF16A" START domain containing 9 "Kinesins|StAR related lipid transfer domain containing" "622|759" 2002-08-28 2015-11-20 2015-11-20 57519 ENSG00000159433 OTTHUMG00000175799 uc010udj.3 AB037721 XM_011521831 CCDS53935 Q9P2P6 10718198 MGI:3045258 RGD:1593360 STARD9 614642 +HGNC:10666 STARD10 StAR related lipid transfer domain containing 10 protein-coding gene gene with protein product Approved 11q13 11q13 "NY-CO-28|CGI-52|PCTP2" SDCCAG28 "serologically defined colon cancer antigen 28|START domain containing 10" StAR related lipid transfer domain containing 759 1999-08-25 2003-02-07 2015-11-20 2015-11-20 10809 ENSG00000214530 OTTHUMG00000167954 uc001otb.4 AF039696 NM_006645 CCDS41688 Q9Y365 9610721 MGI:1860093 RGD:1306548 STARD10 +HGNC:39992 STARD10-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:19164 STARD13 StAR related lipid transfer domain containing 13 protein-coding gene gene with protein product Approved 13q13.1 13q13.1 "GT650|DLC2|ARHGAP37" LINC00464 "START domain containing 13|long intergenic non-protein coding RNA 464" "Rho GTPase activating proteins|StAR related lipid transfer domain containing" "721|759" 2002-08-28 2015-11-20 2015-11-20 90627 ENSG00000133121 OTTHUMG00000016708 uc001uuw.4 AL049801 NM_001243466 "CCDS9348|CCDS9349|CCDS9350" Q9Y3M8 8812419 MGI:2385331 RGD:1564816 STARD13 609866 +HGNC:40873 STARD13-AS STARD13 antisense RNA non-coding RNA RNA, long non-coding Approved 13q13.1 13q13.1 STARD13-AS2 "STARD13 antisense RNA 2 (non-protein coding)|STARD13 antisense RNA 2" 2011-05-18 2013-02-18 2013-02-18 2016-10-05 100874241 ENSG00000236581 OTTHUMG00000016710 uc058wiv.1 NR_046693 +HGNC:40872 STARD13-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:41453 STARD13-IT1 STARD13 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q13.1 13q13.1 STARD13 intronic transcript 1 (non-protein coding) 2011-05-04 2015-02-25 2015-02-25 100874373 ENSG00000230300 OTTHUMG00000016706 uc058whh.1 +HGNC:11360 STARP1 steroidogenic acute regulatory protein pseudogene 1 pseudogene pseudogene Approved 13q21.32 13q21.32 STARD1P1 steroidogenic acute regulator pseudogene 1 1996-04-24 2007-08-16 2011-01-11 6771 ENSG00000214266 OTTHUMG00000017030 U29106 NG_002464 7761400 PGOHUM00000256723 +HGNC:11362 STAT1 signal transducer and activator of transcription 1 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 "STAT91|ISGF-3" transcription factor ISGF-3 components p91/p84 "signal transducer and activator of transcription 1, 91kD|signal transducer and activator of transcription 1, 91kDa" SH2 domain containing 741 1995-11-08 2015-11-09 2016-10-12 6772 ENSG00000115415 OTTHUMG00000132699 uc002usj.3 NM_007315 "CCDS2309|CCDS42793" P42224 7885841 MGI:103063 RGD:3771 "STAT1base: Mutation registry for STAT1 deficiency|http://structure.bmc.lu.se/idbase/STAT1base/|LRG_111|http://www.lrg-sequence.org/LRG/LRG_111" STAT1 600555 119879 +HGNC:11363 STAT2 signal transducer and activator of transcription 2 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 STAT113 "signal transducer and activator of transcription 2, 113kD|signal transducer and activator of transcription 2, 113kDa" SH2 domain containing 741 1995-11-08 2015-11-09 2015-11-09 6773 ENSG00000170581 OTTHUMG00000170760 uc001slc.4 BC051284 NM_005419 "CCDS8917|CCDS55836" P52630 7885841 MGI:103039 RGD:1311649 STAT2 600556 434238 +HGNC:11364 STAT3 signal transducer and activator of transcription 3 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 APRF signal transducer and activator of transcription 3 (acute-phase response factor) SH2 domain containing 741 1995-11-08 2016-04-04 2016-10-12 6774 ENSG00000168610 OTTHUMG00000150645 uc002hzl.2 BC014482 "NM_139276|NM_003150" "CCDS32656|CCDS32657|CCDS59288" P40763 7512451 MGI:103038 RGD:3772 "STAT3base: Mutation registry for Hyper-IgE syndrome|http://structure.bmc.lu.se/idbase/STAT3base/|LRG_112|http://www.lrg-sequence.org/LRG/LRG_112" STAT3 102582 138523 +HGNC:11365 STAT4 signal transducer and activator of transcription 4 protein-coding gene gene with protein product Approved 2q32.2-q32.3 02q32.2-q32.3 SH2 domain containing 741 1995-11-08 2016-10-11 6775 ENSG00000138378 OTTHUMG00000132700 uc002usn.3 NM_003151 CCDS2310 Q14765 "8007943|8700208" MGI:103062 RGD:1305747 STAT4 600558 320815 +HGNC:11366 STAT5A signal transducer and activator of transcription 5A protein-coding gene gene with protein product Approved 17q21.2 17q21.2 MGF STAT5 SH2 domain containing 741 1995-11-09 2016-10-05 6776 ENSG00000126561 OTTHUMG00000150725 uc002hzj.3 U43185 NM_003152 "CCDS11424|CCDS74066|CCDS74067" P42229 "7719937|8631883" MGI:103036 RGD:3773 STAT5A 601511 +HGNC:11367 STAT5B signal transducer and activator of transcription 5B protein-coding gene gene with protein product Approved 17q21.2 17q21.2 SH2 domain containing 741 1997-01-28 2016-10-12 6777 ENSG00000173757 OTTHUMG00000150724 uc002hzh.4 BC065227 NM_012448 CCDS11423 P51692 8631883 MGI:103035 RGD:3774 "STAT5Bbase: Mutation registry for Growth hormone insensitivity with immunodeficiency|http://structure.bmc.lu.se/idbase/STAT5Bbase/|LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/growth/home.php?select_db=STAT5B|LRG_192|http://www.lrg-sequence.org/LRG/LRG_192" STAT5B 604260 119882 +HGNC:11368 STAT6 signal transducer and activator of transcription 6 protein-coding gene gene with protein product Approved 12q13 12q13 "D12S1644|IL-4-STAT" signal transducer and activator of transcription 6, interleukin-4 induced SH2 domain containing 741 1995-11-09 2016-03-11 2016-03-11 6778 ENSG00000166888 OTTHUMG00000171194 uc058psk.1 "BC005823|BQ028928" NM_003153 "CCDS8931|CCDS53804" P42226 "9605853|8085155" MGI:103034 RGD:1309063 STAT6 601512 326078 +HGNC:11369 STATH statherin protein-coding gene gene with protein product Approved 4q13.3 04q13.3 STR Histatins and statherin 971 2001-06-22 2014-11-19 6779 ENSG00000126549 OTTHUMG00000129394 uc062xbr.1 NM_003154 "CCDS3533|CCDS33998" P02808 3502720 STATH 184470 +HGNC:11370 STAU1 staufen double-stranded RNA binding protein 1 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 PPP1R150 protein phosphatase 1, regulatory subunit 150 STAU "staufen (Drosophila, RNA-binding protein)|staufen, RNA binding protein (Drosophila)|staufen, RNA binding protein, homolog 1 (Drosophila)" Protein phosphatase 1 regulatory subunits 694 1996-04-22 2005-11-04 2013-06-05 2016-10-05 6780 ENSG00000124214 OTTHUMG00000032691 uc002xud.3 NM_017453 "CCDS13414|CCDS13415|CCDS33481" O95793 "8884277|15680326" MGI:1338864 RGD:621778 STAU1 601716 +HGNC:11371 STAU2 staufen double-stranded RNA binding protein 2 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 39K2 "staufen (Drosophila, RNA-binding protein) homolog 2|staufen, RNA binding protein, homolog 2 (Drosophila)" 2000-01-07 2013-06-05 2013-06-05 27067 ENSG00000040341 OTTHUMG00000164499 uc003xzm.4 Y19062 NM_001164380 "CCDS6214|CCDS55244|CCDS55245|CCDS55246|CCDS55247|CCDS55248" Q9NUL3 10585778 MGI:1352508 RGD:621479 STAU2 605920 +HGNC:44101 STAU2-AS1 STAU2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q21.11 08q21.11 STAU2 antisense RNA 1 (non-protein coding) 2012-06-22 2012-08-15 2012-10-12 100128126 ENSG00000253302 OTTHUMG00000164568 uc003xzl.4 AK056720 NR_038406 +HGNC:24854 STBD1 starch binding domain 1 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "FLJ41801|GENX-3414" genethonin 1 2007-07-17 2014-11-19 8987 ENSG00000118804 OTTHUMG00000130109 uc003hka.4 AF062534 NM_003943 CCDS3578 O95210 "9794794|8828038" MGI:1261768 RGD:1311800 STBD1 607406 +HGNC:11373 STC1 stanniocalcin 1 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 STC 1999-01-07 2015-08-26 6781 ENSG00000159167 OTTHUMG00000097853 uc003xdw.2 NM_003155 CCDS6043 P52823 9480753 MGI:109131 RGD:621776 STC1 601185 +HGNC:11374 STC2 stanniocalcin 2 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 STC-2 1999-01-07 2015-08-26 8614 ENSG00000113739 OTTHUMG00000130542 uc003mco.2 AB012664 NM_003714 CCDS4388 O76061 "9723890|9753616" MGI:1316731 RGD:621777 STC2 603665 +HGNC:11378 STEAP1 STEAP family member 1 protein-coding gene gene with protein product Approved 7q21.13 07q21.13 PRSS24 STEAP "six transmembrane epithelial antigen of the prostate|six transmembrane epithelial antigen of the prostate 1|STEAP1 metalloreductase" "Proteases, serine|STEAP family" "738|1324" 1999-12-10 2005-02-24 2016-07-27 2016-10-05 26872 ENSG00000164647 OTTHUMG00000023006 uc003ujx.3 AF186249 NM_012449 CCDS5614 Q9UHE8 MGI:1917608 RGD:1311543 STEAP1 604415 1.16.1.- +HGNC:41907 STEAP1B STEAP family member 1B protein-coding gene gene with protein product Approved 7p15.3 07p15.3 STEAP family 1324 2011-05-19 2015-09-09 256227 ENSG00000105889 OTTHUMG00000152529 uc003svh.4 NM_207342 "CCDS55094|CCDS56469" Q6NZ63 STEAP1B +HGNC:17885 STEAP2 STEAP2 metalloreductase protein-coding gene gene with protein product Approved 7q21.13 07q21.13 "IPCA-1|STAMP1|STMP" PCANAP1 "prostate cancer associated protein 1|six transmembrane epithelial antigen of the prostate 2|STEAP family member 2, metalloreductase" STEAP family 1324 2002-09-12 2015-11-19 2016-07-27 261729 ENSG00000157214 OTTHUMG00000023341 uc010len.3 AF455138 NM_152999 "CCDS5615|CCDS43612|CCDS59064" Q8NFT2 "10613842|12095985" MGI:1921301 RGD:1307050 STEAP2 605094 1.16.1.- +HGNC:40820 STEAP2-AS1 STEAP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q21.13 07q21.13 STEAP2 antisense RNA 1 (non-protein coding) 2011-09-30 2012-08-15 2014-11-19 100874100 ENSG00000227646 OTTHUMG00000065036 uc064fdm.1 NR_110029 +HGNC:24592 STEAP3 STEAP3 metalloreductase protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "TSAP6|dudlin-2|STMP3" STEAP family member 3, metalloreductase STEAP family 1324 2005-06-15 2015-11-19 2016-07-27 55240 ENSG00000115107 OTTHUMG00000131402 uc002tlp.4 AY029585 NM_018234 "CCDS2125|CCDS42738|CCDS82504" Q658P3 12606722 MGI:1915678 RGD:708552 STEAP3 609671 358321 1.16.1.- +HGNC:41053 STEAP3-AS1 STEAP3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q14.2 02q14.2 STEAP3 antisense RNA 1 (non-protein coding) 2011-09-30 2012-08-15 2014-11-19 100874111 ENSG00000229867 OTTHUMG00000153297 uc061nhy.1 NR_046721 +HGNC:21923 STEAP4 STEAP4 metalloreductase protein-coding gene gene with protein product Approved 7q21.12 07q21.12 "FLJ23153|TIARP|STAMP2" TNFAIP9 "tumor necrosis factor, alpha-induced protein 9|STEAP family member 4" STEAP family 1324 2004-10-28 2005-06-15 2015-11-19 2016-10-05 79689 ENSG00000127954 OTTHUMG00000153853 uc003ujs.4 AK026806 NM_024636 "CCDS43611|CCDS56494" Q687X5 "11443137|15897894" MGI:1923560 RGD:1560331 STEAP4 611098 1.16.1.- +HGNC:18839 STH saitohin protein-coding gene gene with protein product Approved 17q21.31 17q21.31 MAPTIT microtubule-associated protein tau (MAPT) intronic transcript 2008-01-22 2014-09-29 246744 ENSG00000256762 OTTHUMG00000168633 uc002ijy.2 AA325304 NM_001007532 CCDS54136 Q8IWL8 "12032355|16186110" STH 607067 +HGNC:10879 STIL SCL/TAL1 interrupting locus protein-coding gene gene with protein product Approved 1p33 01p33 MCPH7 SIL TAL1 (SCL) interrupting locus 1997-11-05 2005-11-29 2005-11-29 2016-10-05 6491 ENSG00000123473 OTTHUMG00000007851 uc001cre.1 M74558 NM_003035 "CCDS548|CCDS41329|CCDS72785|CCDS72786" Q15468 2209547 MGI:107477 RGD:1304972 STIL 181590 171649 +HGNC:11386 STIM1 stromal interaction molecule 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "GOK|D11S4896E" Sterile alpha motif domain containing 760 1997-02-05 2016-10-12 6786 ENSG00000167323 OTTHUMG00000133360 uc001lyv.3 "BC021300|U52426" NM_003156 "CCDS7749|CCDS60706|CCDS73247" Q13586 "8921403|11463338|11983428" MGI:107476 RGD:1306831 LRG_164|http://www.lrg-sequence.org/LRG/LRG_164 STIM1 605921 201300 +HGNC:19205 STIM2 stromal interaction molecule 2 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 Sterile alpha motif domain containing 760 2002-09-24 2016-04-25 57620 ENSG00000109689 OTTHUMG00000097805 uc003gsg.6 AB040915 NM_020860 "CCDS3440|CCDS54751|CCDS54752" Q9P246 11463338 MGI:2151156 RGD:1304641 STIM2 610841 +HGNC:11387 STIP1 stress induced phosphoprotein 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "HOP|STI1" Hsp70/Hsp90-organizing protein stress-induced-phosphoprotein 1 Tetratricopeptide repeat domain containing 769 1999-08-25 2015-11-20 2016-10-05 10963 ENSG00000168439 OTTHUMG00000167789 uc001nyk.2 BC039299 NM_006819 "CCDS8058|CCDS60827|CCDS60828" P31948 1569099 MGI:109130 RGD:621599 STIP1 605063 +HGNC:49552 STIP1P1 stress induced phosphoprotein 1 pseudogene 1 pseudogene pseudogene Approved 2q22.2 02q22.2 2014-01-13 2015-11-20 2015-11-20 100420434 NG_023736 PGOHUM00000259808 +HGNC:49553 STIP1P2 stress induced phosphoprotein 1 pseudogene 2 pseudogene pseudogene Approved 2q36.3 02q36.3 2014-01-13 2015-11-20 2015-11-20 100420436 NG_023766 PGOHUM00000259812 +HGNC:49554 STIP1P3 stress induced phosphoprotein 1 pseudogene 3 pseudogene pseudogene Approved Xq21.2 Xq21.2 2014-01-13 2015-11-20 2015-11-20 441505 ENSG00000225536 OTTHUMG00000021939 NG_022615 PGOHUM00000241423 +HGNC:11406 STK3 serine/threonine kinase 3 protein-coding gene gene with protein product Approved 8q22.2 08q22.2 "MST2|KRS1" serine/threonine kinase 3 (Ste20, yeast homolog) 1997-10-09 2010-06-25 2015-08-26 6788 ENSG00000104375 OTTHUMG00000164651 uc003yip.5 BC010640 NM_006281 "CCDS47900|CCDS59108|CCDS75774" Q13188 8816758 MGI:1928487 RGD:68412 STK3 605030 objectId:2219 +HGNC:11408 STK4 serine/threonine kinase 4 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "MST1|KRS2|YSK3" "mammalian sterile 20-like 1|yeast Ste20-like|kinase responsive to stress 2" 1997-10-09 2016-10-12 6789 ENSG00000101109 OTTHUMG00000033059 uc002xnb.4 NM_006282 CCDS13341 Q13043 "8816758|9545236|11517310" MGI:1929004 RGD:1312035 LRG_535|http://www.lrg-sequence.org/LRG/LRG_535 STK4 604965 317798 objectId:2225 2.7.11.1 +HGNC:43811 STK4-AS1 STK4 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 20q13.12 20q13.12 "STK4 antisense RNA 1 (non-protein coding)|STK4 antisense RNA 1" 2012-03-09 2012-10-15 2012-10-15 100505826 ENSG00000227477 OTTHUMG00000032555 uc002xna.3 NR_038341 +HGNC:11388 STK10 serine/threonine kinase 10 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "LOK|PRO2729" lymphocyte-oriented kinase 1997-12-05 2014-12-01 6793 ENSG00000072786 OTTHUMG00000163265 uc003mbo.2 AB015718 NM_005990 CCDS34290 O94804 10199912 MGI:1099439 RGD:3779 STK10 603919 objectId:2211 +HGNC:11389 STK11 serine/threonine kinase 11 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "PJS|LKB1" polarization-related protein LKB1 serine/threonine kinase 11 (Peutz-Jeghers syndrome) 1998-01-21 2005-12-13 2016-10-12 6794 ENSG00000118046 OTTHUMG00000180118 uc002lrl.2 U63333 NM_000455 CCDS45896 Q15831 9425897 MGI:1341870 RGD:1308653 LRG_319|http://www.lrg-sequence.org/LRG/LRG_319 STK11 602216 119884 objectId:2212 +HGNC:19184 STK11IP serine/threonine kinase 11 interacting protein protein-coding gene gene with protein product Approved 2q35 02q35 "LIP1|KIAA1898|LKB1IP|STK11IP1" LKB1 interacting protein 2002-09-12 2014-11-19 114790 ENSG00000144589 OTTHUMG00000059239 uc002vml.3 AF450267 NM_052902 CCDS46521 Q8N1F8 11741830 MGI:1918978 RGD:1305046 STK11IP 607172 +HGNC:11394 STK16 serine/threonine kinase 16 protein-coding gene gene with protein product Approved 2q35 02q35 "PKL12|MPSK" 1999-05-25 2015-08-26 8576 ENSG00000115661 OTTHUMG00000154520 uc002vko.3 AF060798 XM_011512067 "CCDS42822|CCDS82573" O75716 9712705 MGI:1313271 RGD:629474 STK16 604719 objectId:2213 +HGNC:19283 STK16P1 serine/threonine kinase 16 pseudogene 1 pseudogene pseudogene Approved 14q21.3 14q21.3 STK16P serine/threonine kinase 16 pseudogene 2003-01-13 2010-04-16 2010-04-16 2014-11-19 326107 NG_002530 PGOHUM00000248162 +HGNC:11395 STK17A serine/threonine kinase 17a protein-coding gene gene with protein product Approved 7p13 07p13 DRAK1 death-associated protein kinase-related 1 serine/threonine kinase 17a (apoptosis-inducing) Death associated protein kinases 1021 1999-05-21 2007-02-12 2014-11-19 9263 ENSG00000164543 OTTHUMG00000022825 uc003tih.4 AB011420 NM_004760 CCDS5470 Q9UEE5 9786912 STK17A 604726 objectId:2214 +HGNC:11396 STK17B serine/threonine kinase 17b protein-coding gene gene with protein product Approved 2q32.3 02q32.3 DRAK2 death-associated protein kinase-related 2 serine/threonine kinase 17b (apoptosis-inducing) Death associated protein kinases 1021 1999-05-21 2007-02-12 2016-10-05 9262 ENSG00000081320 OTTHUMG00000132735 uc010fsh.4 AB011421 XM_011512168 CCDS2315 O94768 9786912 MGI:2138162 RGD:620457 STK17B 604727 objectId:2215 +HGNC:11398 STK19 serine/threonine kinase 19 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "D6S60|G11|RP1" 1999-01-22 2015-08-26 8859 ENSG00000204344 OTTHUMG00000166424 uc003nyv.4 X77474 NM_032454 "CCDS4733|CCDS34417" P49842 "8012361|9812991" MGI:1860085 RGD:1359601 STK19 604977 objectId:2216 +HGNC:21668 STK19B serine/threonine kinase 19B (pseudogene) pseudogene pseudogene Approved 6p21.33 06p21.33 "bPG116M5.10|RP2" STK19P serine/threonine kinase 19 pseudogene 2003-09-01 2014-04-23 2016-01-06 2016-01-06 373159 ENSG00000250535 OTTHUMG00000031025 L26262 NG_029245 8132574 PGOHUM00000243587 +HGNC:11403 STK24 serine/threonine kinase 24 protein-coding gene gene with protein product Approved 13q32.2 13q32.2 "MST-3|MST3|MST3B|STK3|STE20" "STE20-like kinase 3|sterile 20-like kinase 3" serine/threonine kinase 24 (Ste20, yeast homolog) 2000-02-11 2010-06-25 2016-10-05 8428 ENSG00000102572 OTTHUMG00000017250 uc001vnm.3 AF024636 NM_003576 "CCDS9488|CCDS32001|CCDS66573" Q9Y6E0 "9353338|10644707" MGI:2385007 RGD:1561742 STK24 604984 objectId:2217 +HGNC:39935 STK24-AS1 STK24 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q32.2 13q32.2 STK24 antisense RNA 1 (non-protein coding) 2011-04-13 2012-08-15 2014-11-19 100874069 ENSG00000224418 OTTHUMG00000017249 uc058xye.1 XR_931671 +HGNC:50360 STK24P1 serine/threonine kinase 24 pseudogene 1 pseudogene pseudogene Approved Xq26.3 Xq26.3 2014-04-23 2014-04-23 100421784 ENSG00000230079 OTTHUMG00000022506 NG_026770 PGOHUM00000241570 +HGNC:11404 STK25 serine/threonine kinase 25 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "SOK1|YSK1" serine/threonine kinase 25 (Ste20, yeast homolog) 2000-01-18 2010-06-25 2014-11-19 10494 ENSG00000115694 OTTHUMG00000133408 uc002wbn.5 D63780 NM_006374 "CCDS2549|CCDS63199|CCDS63200" O00506 "8887545|9160885|15037601" MGI:1891699 RGD:727809 STK25 602255 objectId:2218 +HGNC:50361 STK25P1 serine/threonine kinase 25 pseudogene 1 pseudogene pseudogene Approved 18p11.21 18p11.21 2014-04-23 2014-04-23 100533662 ENSG00000267570 OTTHUMG00000181907 NG_028709 PGOHUM00000235004 +HGNC:18174 STK26 serine/threonine protein kinase 26 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 "MST4|MASK" STE20-like kinase 4 2014-09-15 2014-11-19 51765 ENSG00000134602 OTTHUMG00000022420 AB040057 NM_016542 "CCDS14631|CCDS43995|CCDS48168" Q9P289 11306563 MGI:1917665 RGD:1563568 300547 +HGNC:11407 STK31 serine/threonine kinase 31 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "TDRD8|SgK396" Tudor domain containing 780 2000-06-16 2014-11-19 56164 ENSG00000196335 OTTHUMG00000023053 uc003sws.6 AF285599 NM_031414 "CCDS5386|CCDS43556|CCDS59049" Q9BXU1 11279525 MGI:1924735 RGD:1564384 STK31 605790 objectId:2220 +HGNC:28317 STK32A serine/threonine kinase 32A protein-coding gene gene with protein product Approved 5q32 05q32 "MGC22688|YANK1" 2004-04-20 2014-11-19 202374 ENSG00000169302 OTTHUMG00000163411 uc010jgn.2 NM_145001 "CCDS47299|CCDS75351|CCDS54931" Q8WU08 12477932 MGI:2442403 RGD:1308338 STK32A objectId:1537 +HGNC:14217 STK32B serine/threonine kinase 32B protein-coding gene gene with protein product Approved 4p16.2 04p16.2 "STKG6|YANK2|STK32|HSA250839" 2004-04-20 2016-10-05 55351 ENSG00000152953 OTTHUMG00000090423 uc003gih.2 AJ250839 NM_018401 "CCDS3380|CCDS77895" Q9NY57 10700184 MGI:1927552 RGD:1306173 STK32B objectId:1538 +HGNC:21332 STK32C serine/threonine kinase 32C protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "PKE|MGC23665|YANK3" 2004-04-20 2014-11-19 282974 ENSG00000165752 OTTHUMG00000019285 uc001lle.2 AK057849 NM_173575 "CCDS7666|CCDS81525|CCDS81526|CCDS81527" Q86UX6 MGI:2385336 RGD:1305864 STK32C objectId:1539 +HGNC:14568 STK33 serine/threonine kinase 33 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 2001-02-09 2016-10-05 65975 ENSG00000130413 OTTHUMG00000140275 uc001mgk.3 AJ303380 NM_030906 "CCDS7789|CCDS73253|CCDS73254" Q9BYT3 11738831 MGI:2152419 RGD:1590972 STK33 607670 objectId:2221 +HGNC:26871 STK33P1 serine/threonine kinase 33 pseudogene 1 pseudogene pseudogene Approved 9q21.33 09q21.33 STK33ps STK33P serine/threonine kinase 33 pseudogene 2005-05-06 2010-03-10 2010-03-10 2014-11-19 553118 ENSG00000227412 OTTHUMG00000020122 AL451132 NG_009480 PGOHUM00000236668 +HGNC:16254 STK35 serine/threonine kinase 35 protein-coding gene gene with protein product Approved 20p13 20p13 "bA550O8.2|CLIK1" CLP-36 interacting kinase 2001-07-17 2016-08-10 140901 ENSG00000125834 OTTHUMG00000031688 uc002wfw.5 AL359916 NM_080836 CCDS13024 Q8TDR2 11973348 MGI:1914583 RGD:1310247 STK35 609370 objectId:2222 2.7.11.1 +HGNC:17209 STK36 serine/threonine kinase 36 protein-coding gene gene with protein product Approved 2q35 02q35 "KIAA1278|FU" fused homolog (Drosophila) serine/threonine kinase 36 (fused homolog, Drosophila) 2001-11-22 2010-06-25 2015-08-26 27148 ENSG00000163482 OTTHUMG00000133079 uc002viu.4 AB033104 XM_017003804 "CCDS2421|CCDS58750" Q9NRP7 10806483 MGI:1920831 RGD:1307318 STK36 607652 objectId:2223 +HGNC:17847 STK38 serine/threonine kinase 38 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 NDR 2001-12-19 2016-10-05 11329 ENSG00000112079 OTTHUMG00000014598 uc003omh.3 NM_007271 CCDS4822 Q15208 7761441 MGI:2442572 RGD:1309455 STK38 606964 objectId:1517 +HGNC:17848 STK38L serine/threonine kinase 38 like protein-coding gene gene with protein product Approved 12p11.23 12p11.23 "KIAA0965|NDR2" nuclear Dbf2-related 2 2001-12-21 2014-11-19 23012 ENSG00000211455 OTTHUMG00000169284 uc001rhr.4 AB023182 NM_015000 CCDS31761 Q9Y2H1 16488889 MGI:1922250 RGD:1564793 STK38L 615836 objectId:1518 +HGNC:17717 STK39 serine/threonine kinase 39 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "DCHT|SPAK" STE20/SPS1 homolog (yeast) serine threonine kinase 39 2002-01-14 2015-11-19 2015-11-19 27347 ENSG00000198648 OTTHUMG00000133745 uc002uea.4 AF099989 NM_013233 CCDS42770 Q9UEW8 10980603 MGI:1858416 RGD:621643 STK39 607648 objectId:2224 +HGNC:21373 STK40 serine/threonine kinase 40 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "MGC4796|SgK495" 2005-05-03 2014-11-19 83931 ENSG00000196182 OTTHUMG00000008238 uc001cam.3 BC008344 NM_032017 "CCDS407|CCDS60089" Q8N2I9 MGI:1921428 RGD:727884 STK40 609437 objectId:2226 +HGNC:28669 STKLD1 serine/threonine kinase like domain containing 1 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "MGC43306|SGK071" C9orf96 chromosome 9 open reading frame 96 2004-03-11 2014-05-29 2016-06-15 2016-06-15 169436 ENSG00000198870 OTTHUMG00000020862 BC036504 NM_153710 CCDS35169 Q8NE28 12477932 MGI:2685557 RGD:1307355 objectId:1951 +HGNC:6510 STMN1 stathmin 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "SMN|OP18|PR22|PP19|PP17|Lag|FLJ32206" oncoprotein 18 "LAP18|C1orf215" "chromosome 1 open reading frame 215|stathmin 1/oncoprotein 18" Stathmins 1138 1990-12-17 2001-07-13 2009-04-28 2014-11-19 3925 ENSG00000117632 OTTHUMG00000007389 uc001blc.4 J04991 NM_005563 "CCDS269|CCDS44090" P16949 2917975 MGI:96739 RGD:2992 STMN1 151442 +HGNC:44062 STMN1P1 stathmin 1 pseudogene 1 pseudogene pseudogene Approved 12p11.21 12p11.21 2012-05-30 2015-01-30 100506685 ENSG00000276058 OTTHUMG00000186659 NG_030122 PGOHUM00000291284 +HGNC:44063 STMN1P2 stathmin 1 pseudogene 2 pseudogene pseudogene Approved 4q28.3 04q28.3 2012-05-30 2014-11-19 100289663 ENSG00000251440 OTTHUMG00000161277 NG_030216 PGOHUM00000245706 +HGNC:10577 STMN2 stathmin 2 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 SCG10 SCGN10 stathmin-like 2 Stathmins 1138 2000-03-29 2001-07-13 2014-04-01 2014-11-19 11075 ENSG00000104435 OTTHUMG00000164610 uc003ybj.3 NM_007029 "CCDS43748|CCDS56542" Q93045 "8622778|12140291" MGI:98241 RGD:68947 STMN2 600621 +HGNC:15926 STMN3 stathmin 3 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 SCLIP stathmin-like 3 Stathmins 1138 2001-08-01 2015-11-16 2016-10-05 50861 ENSG00000197457 OTTHUMG00000032985 uc002yfr.3 AF069709 NM_015894 "CCDS13529|CCDS63330" Q9NZ72 "9603203|10655513" MGI:1277137 RGD:3628 STMN3 608362 +HGNC:16078 STMN4 stathmin 4 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 RB3 stathmin-like 4 Stathmins 1138 2001-07-16 2015-11-16 2015-11-16 81551 ENSG00000015592 OTTHUMG00000099461 uc003xfk.5 NM_030795 "CCDS6055|CCDS64851|CCDS64852|CCDS64854" Q9H169 11230166 MGI:1931224 RGD:69349 STMN4 +HGNC:44668 STMND1 stathmin domain containing 1 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 FLJ23152 2012-12-11 2012-12-11 401236 ENSG00000230873 OTTHUMG00000014304 uc021ymc.1 AK026805 NM_001190766 CCDS58997 H3BQB6 MGI:2686420 RGD:7714979 +HGNC:26200 STN1 STN1, CST complex subunit protein-coding gene gene with protein product Approved 10q24.33 10q24.33 "FLJ22559|bA541N10.2" OBFC1 oligonucleotide/oligosaccharide binding fold containing 1 CST complex 1343 2004-03-16 2016-10-04 2016-10-04 2016-10-04 79991 ENSG00000107960 OTTHUMG00000018996 uc001kxm.4 BC017400 NM_024928 CCDS7552 Q9H668 19648609 MGI:1915581 RGD:1305637 613128 353238 +HGNC:3383 STOM stomatin protein-coding gene gene with protein product Approved 9q33.2 09q33.2 BND7 "EPB7|EPB72" erythrocyte membrane protein band 7.2 (stomatin) 1992-09-14 2002-11-15 2002-11-11 2016-10-05 2040 ENSG00000148175 OTTHUMG00000020590 uc004blh.5 NM_004099 "CCDS6830|CCDS6831|CCDS75892" P27105 1883838 MGI:95403 RGD:1305109 STOM 133090 +HGNC:14560 STOML1 stomatin like 1 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "hUNC-24|SLP-1|STORP|FLJ36370" "stomatin-like 1|stomatin (EBP72)-like 1|EPB72-like 1" stomatin (EPB72)-like 1 2001-02-27 2015-12-01 2015-12-01 9399 ENSG00000067221 OTTHUMG00000137608 uc002awe.5 Y16522 NM_004809 "CCDS10254|CCDS58381|CCDS58382|CCDS58383|CCDS58384|CCDS58385" Q9UBI4 9931417 MGI:1916356 RGD:1559463 STOML1 608326 +HGNC:14559 STOML2 stomatin like 2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "SLP-2|HSPC108" EPB72-like 2 stomatin (EPB72)-like 2 2001-02-05 2015-12-01 2016-10-05 30968 ENSG00000165283 OTTHUMG00000019851 uc003zwi.5 AF190167 NM_013442 "CCDS6577|CCDS69588|CCDS75830" Q9UJZ1 "10713127|17121834" MGI:1913842 RGD:1308285 STOML2 608292 +HGNC:19420 STOML3 stomatin like 3 protein-coding gene gene with protein product Approved 13q13.2 13q13.2 "SRO|Epb7.2l" EPB72-like 3 stomatin (EPB72)-like 3 2002-11-11 2015-12-01 2015-12-01 161003 ENSG00000133115 OTTHUMG00000016763 uc001uwx.4 BC025760 XM_017020400 "CCDS9367|CCDS45040" Q8TAV4 12122055 MGI:2388072 RGD:1311090 STOML3 608327 +HGNC:17003 STON1 stonin 1 protein-coding gene gene with protein product Approved 2p16.3 02p16.3 "SBLF|stoned-b1" stoned B homolog 1 (Drosophila) 2006-02-10 2015-09-08 11037 ENSG00000243244 OTTHUMG00000129169 uc010fbm.4 AF026169 NM_006873 CCDS1841 Q9Y6Q2 "14504226|10364255" MGI:1924307 RGD:727878 STON1 605357 +HGNC:30651 STON1-GTF2A1L STON1-GTF2A1L readthrough other readthrough Approved 2p16.3 02p16.3 SALF stoned B/TFIIA alpha/beta like factor 2007-07-31 2014-11-19 286749 ENSG00000068781 OTTHUMG00000152037 uc061jag.1 AF026169 NM_172311 "CCDS1840|CCDS56118|CCDS56119" "10364255|11159353" STON1-GTF2A1L +HGNC:30652 STON2 stonin 2 protein-coding gene gene with protein product Approved 14q31.1 14q31.1 "STNB2|STN2" stoned B homolog 2 (Drosophila) 2006-02-10 2015-02-24 85439 ENSG00000140022 OTTHUMG00000171416 uc059dyl.1 AB208948 NM_033104 "CCDS9875|CCDS58332" Q8WXE9 "11381094|11454741" MGI:1918272 RGD:1311502 STON2 608467 +HGNC:23508 STOX1 storkhead box 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 FLJ25162 C10orf24 chromosome 10 open reading frame 24 2003-11-21 2005-04-04 2005-04-04 2014-11-19 219736 ENSG00000165730 OTTHUMG00000018367 uc001jos.3 AK057891 NM_152709 "CCDS41535|CCDS44416|CCDS44417" Q6ZVD7 MGI:2684909 RGD:1310622 STOX1 609397 361372 +HGNC:25450 STOX2 storkhead box 2 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 DKFZp762K222 2005-04-04 2015-08-26 56977 ENSG00000173320 OTTHUMG00000160618 uc003ivz.2 AB037813 NM_020225 CCDS47167 Q9P2F5 MGI:1918319 RGD:708477 STOX2 +HGNC:28070 STPG1 sperm tail PG-rich repeat containing 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "FLJ33340|MAPO2" O6-methylguanine-induced apoptosis 2 C1orf201 chromosome 1 open reading frame 201 2006-02-15 2012-07-30 2016-02-26 2016-02-26 90529 ENSG00000001460 OTTHUMG00000003297 uc001bja.4 BC047705 NM_178122 "CCDS253|CCDS55581" Q5TH74 23028632 MGI:1926056 RGD:1560169 STPG1 615826 +HGNC:28712 STPG2 sperm tail PG-rich repeat containing 2 protein-coding gene gene with protein product Approved 4q22.3-q23 04q22.3-q23 MGC46496 C4orf37 chromosome 4 open reading frame 37 2007-06-14 2012-07-30 2016-02-26 2016-10-11 285555 ENSG00000163116 OTTHUMG00000131009 uc003htt.3 BC036870 NM_174952 CCDS3645 Q8N412 23031811 MGI:2685863 RGD:1591946 +HGNC:41209 STPG2-AS1 STPG2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q22.3 04q22.3 STPG2 antisense RNA 1 (non-protein coding) 2012-07-30 2012-08-15 2014-11-19 101410545 ENSG00000251620 OTTHUMG00000161180 uc031sgo.1 DA719663 NR_102713 +HGNC:37285 STPG3 sperm-tail PG-rich repeat containing 3 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 FLJ40246 C9orf173 chromosome 9 open reading frame 173 2009-10-02 2016-04-22 2016-04-22 2016-04-22 441476 ENSG00000197768 OTTHUMG00000187404 uc004cmj.2 NM_001004353 "CCDS48065|CCDS59156|CCDS75940|CCDS75941" Q8N7X2 MGI:1921722 RGD:1561978 +HGNC:51176 STPG3-AS1 STPG3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q34.3 09q34.3 C9orf173-AS1 C9orf173 antisense RNA 1 2014-07-31 2016-08-12 2016-08-12 2016-08-12 100129722 ENSG00000275549 OTTHUMG00000187409 AK097764 NR_038389 +HGNC:30650 STRA6 stimulated by retinoic acid 6 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 FLJ12541 retinol binding protein 4 receptor "stimulated by retinoic acid gene 6 homolog (mouse)|stimulated by retinoic acid 6 homolog (mouse)" 2004-12-20 2012-12-07 2014-11-19 64220 ENSG00000137868 OTTHUMG00000138998 uc059lgy.1 AF352728 XM_017022478 "CCDS10261|CCDS45301|CCDS45302|CCDS55973|CCDS55974|CCDS58387" Q9BX79 "17255476|17273977" MGI:107742 RGD:1307551 LOVD|http://lsdb.hgu.mrc.ac.uk/home.php?select_db=STRA6 STRA6 610745 138526 +HGNC:30653 STRA8 stimulated by retinoic acid 8 protein-coding gene gene with protein product Approved 7q33 07q33 "stimulated by retinoic acid gene 8 homolog (mouse)|stimulated by retinoic acid 8 homolog (mouse)" 2006-10-20 2012-12-07 2014-11-18 346673 ENSG00000146857 OTTHUMG00000155415 uc011kpx.2 AF513502 NM_182489 CCDS5839 Q7Z7C7 12489526 MGI:107917 RGD:1562852 STRA8 609987 +HGNC:30172 STRADA STE20-related kinase adaptor alpha protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "NY-BR-96|LYK5|Stlk|STRAD" STE20-like pseudokinase 2008-09-15 2014-11-19 92335 ENSG00000266173 OTTHUMG00000178908 uc002jbm.4 AF308302 XM_005257797 "CCDS11642|CCDS32703|CCDS42367|CCDS54156|CCDS58585" Q7RTN6 "12805220|17921699" MGI:1919399 RGD:727905 STRADA 608626 objectId:2227 +HGNC:13205 STRADB STE20-related kinase adaptor beta protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "CALS-21|PAPK|ILPIPA|ILPIP" ALS2CR2 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 2001-02-13 2008-09-15 2008-09-15 2014-11-19 55437 ENSG00000082146 OTTHUMG00000132831 uc002uyd.5 AB038950 NM_018571 "CCDS2348|CCDS56161" Q9C0K7 "11161814|14511394" MGI:2144047 RGD:1559449 STRADB 607333 objectId:2228 +HGNC:22478 STRADBP1 STE20-related kinase adaptor beta pseudogene 1 pseudogene pseudogene Approved 7q36.1 07q36.1 "STLK6ps1|ALS2CR2P1" 2010-09-30 2010-09-30 389599 ENSG00000213205 OTTHUMG00000157619 AC092025 NG_005932 +HGNC:30796 STRAP serine/threonine kinase receptor associated protein protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "UNRIP|pt-wd|MAWD" Unr-interacting protein WD repeat domain containing 362 2004-04-19 2016-10-05 11171 ENSG00000023734 OTTHUMG00000168791 uc001rdc.5 AB024327 NM_007178 CCDS8676 Q9Y3F4 MGI:1329037 RGD:1311114 STRAP 605986 +HGNC:16462 STRBP spermatid perinuclear RNA binding protein protein-coding gene gene with protein product Approved 9q33.1-q33.3 09q33.1-q33.3 "FLJ11307|SPNR" ILF3L "spermatid perinuclear RNA-binding protein|interleukin enhancer binding factor 3-like" 2001-08-30 2001-11-28 2014-11-18 55342 ENSG00000165209 OTTHUMG00000020636 uc004bns.4 AK002169 XM_017014890 "CCDS6851|CCDS55337" Q96SI9 MGI:104626 RGD:620673 STRBP 611138 +HGNC:16035 STRC stereocilin protein-coding gene gene with protein product Approved 15q15.3 15q15.3 DFNB16 2001-10-03 2014-11-19 161497 ENSG00000242866 OTTHUMG00000059899 uc001zsf.4 BK000138 NM_153700 CCDS10098 Q7RTU9 "11687802|9429146" MGI:2153816 RGD:1593345 STRC 606440 159178 +HGNC:33915 STRCP1 stereocilin pseudogene 1 pseudogene pseudogene Approved 15q15.3 15q15.3 STRCP stereocilin pseudogene 2007-12-17 2010-02-26 2010-02-26 2014-11-19 554225 ENSG00000166763 OTTHUMG00000059934 NG_029359 A6NGW2 12825070 +HGNC:25916 STRIP1 striatin interacting protein 1 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "FLJ14743|KIAA1761|FAR11A" FAR11 factor arrest 11 homolog A (yeast) FAM40A family with sequence similarity 40, member A 2004-05-20 2012-11-05 2012-11-05 2014-11-19 85369 ENSG00000143093 OTTHUMG00000170607 uc001dza.3 AK027649 NM_033088 "CCDS30798|CCDS59197" Q5VSL9 "11214970|12588993|22782902|22298706|18782753" MGI:2443884 RGD:1564249 STRIP1 +HGNC:22209 STRIP2 striatin interacting protein 2 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "KIAA1170|FAR11B" FAR11 factor arrest 11 homolog B (yeast) FAM40B family with sequence similarity 40, member B 2004-05-20 2012-11-05 2012-11-05 2016-10-05 57464 ENSG00000128578 OTTHUMG00000157695 uc011koy.3 AB032996 NM_001134336 "CCDS34752|CCDS47709" Q9ULQ0 "22782902|22298706|18782753" MGI:2444363 RGD:1588437 +HGNC:13462 STRM entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-02-27 +HGNC:11424 STRN striatin protein-coding gene gene with protein product Approved 2p22.2 02p22.2 "SG2NA|PPP2R6A" protein phosphatase 2 regulatory subunit B'''alpha striatin, calmodulin-binding protein "WD repeat domain containing|Protein phosphatase 2 regulatory subunits" "362|696" 1998-03-25 2015-11-23 2016-05-13 6801 ENSG00000115808 OTTHUMG00000100959 uc002rpn.4 AJ223814 XM_011533073 CCDS1784 O43815 "9693043|8769426" MGI:1333757 RGD:3782 STRN 614765 +HGNC:15720 STRN3 striatin 3 protein-coding gene gene with protein product Approved 14q12 14q12 "SG2NA|PPP2R6B" "cell cycle S/G2 nuclear autoantigen|protein phosphatase 2 regulatory subunit B'''beta" striatin, calmodulin binding protein 3 "WD repeat domain containing|Protein phosphatase 2 regulatory subunits" "362|696" 2002-07-22 2015-11-23 2016-05-13 29966 ENSG00000196792 OTTHUMG00000140201 uc001wqv.2 NM_014574 "CCDS9641|CCDS41938" Q13033 "7864889|10681496" MGI:2151064 RGD:621827 STRN3 614766 +HGNC:15721 STRN4 striatin 4 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "zinedin|ZIN|PPP2R6C" protein phosphatase 2 regulatory subunit B'''gamma striatin, calmodulin binding protein 4 "WD repeat domain containing|Protein phosphatase 2 regulatory subunits" "362|696" 2002-12-04 2015-11-23 2016-05-13 29888 ENSG00000090372 OTTHUMG00000183432 uc002pfl.4 AF212940 XM_017026716 "CCDS12690|CCDS42581" Q9NRL3 10748158 MGI:2142346 RGD:1307030 STRN4 614767 +HGNC:11425 STS steroid sulfatase (microsomal), isozyme S protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 ARSC arylsulfatase C ARSC1 steroid sulfatase (microsomal), arylsulfatase C, isozyme S Sulfatases 410 1986-01-01 2007-07-19 2016-10-05 412 ENSG00000101846 OTTHUMG00000021102 uc004cry.5 M16505 NM_000351 CCDS14127 P08842 RGD:3783 STS 300747 119888 3.1.6.2 +HGNC:11426 STSP1 steroid sulfatase (microsomal) pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 STS-Y STSP steroid sulfatase (microsomal) pseudogene 2001-06-22 2010-04-19 2010-04-19 2016-10-05 6803 ENSG00000227166 OTTHUMG00000036409 M23946 NG_001197 3203382 PGOHUM00000233967 +HGNC:6172 STT3A STT3A, catalytic subunit of the oligosaccharyltransferase complex protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "TMC|MGC9042|STT3-A" dolichyl-diphosphooligosaccharide protein glycotransferase ITM1 "integral membrane protein 1|STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)" "STT3 oligosaccharyltransferase catalytic subunits|Oligosaccharyltransferase complex subunits" "444|445" 1996-08-01 2006-02-07 2016-02-15 2016-10-05 3703 ENSG00000134910 OTTHUMG00000165852 uc001qcd.4 BC020965 NM_152713 "CCDS8458|CCDS60998" P46977 "8941377|8634329|10234787" MGI:105124 STT3A 601134 377662 2.4.99.18 +HGNC:44585 STT3A-AS1 STT3A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q24.2 11q24.2 2012-11-19 2012-11-19 105369550 ENSG00000254671 OTTHUMG00000165869 uc058iva.1 "DB470444|DB453285" NR_132372 +HGNC:30611 STT3B STT3B, catalytic subunit of the oligosaccharyltransferase complex protein-coding gene gene with protein product Approved 3p23 03p23 "SIMP|FLJ90106|STT3-B" "source of immunodominant MHC associated peptides|dolichyl-diphosphooligosaccharide protein glycotransferase" STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) "STT3 oligosaccharyltransferase catalytic subunits|Oligosaccharyltransferase complex subunits" "444|445" 2006-02-07 2016-02-15 2016-10-05 201595 ENSG00000163527 OTTHUMG00000130673 uc011axe.3 AK027789 NM_178862 CCDS2650 Q8TCJ2 "12887896|12439619" MGI:1915542 RGD:1311563 STT3B 608605 377672 2.4.99.18 +HGNC:11427 STUB1 STIP1 homology and U-box containing protein 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "UBOX1|CHIP|SDCCAG7|HSPABP2|NY-CO-7" "STIP1 homology and U-box containing protein 1|STIP1 homology and U-box containing protein 1, E3 ubiquitin protein ligase" "U-box domain containing|Tetratricopeptide repeat domain containing" "365|769" 1999-11-25 2016-03-23 2016-03-23 10273 ENSG00000103266 OTTHUMG00000121140 uc002cit.4 AF039689 NM_005861 "CCDS10419|CCDS76797" Q9UNE7 "10330192|9610721" MGI:1891731 RGD:1306167 STUB1 607207 395106 +HGNC:30491 STUM stum, mechanosensory transduction mediator homolog protein-coding gene gene with protein product Approved 1q42.12 01q42.12 DKFZp761P211 stumble homolog (Drosophila) C1orf95 chromosome 1 open reading frame 95 2005-05-31 2016-05-17 2016-05-17 2016-05-17 375057 ENSG00000203685 OTTHUMG00000037583 uc057pyu.1 AF035308 NM_001003665 CCDS31044 Q69YW2 24626929 MGI:2138735 RGD:1592263 +HGNC:11433 STX1A syntaxin 1A protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "HPC-1|p35-1" STX1 syntaxin 1A (brain) Syntaxins 818 1992-09-09 2015-11-26 2016-10-05 6804 ENSG00000106089 OTTHUMG00000137422 uc003tyx.4 NM_004603 "CCDS34655|CCDS55120" Q16623 1321498 MGI:109355 RGD:69430 STX1A 186590 371333 +HGNC:18539 STX1B syntaxin 1B protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "STX1B1|STX1B2" "syntaxin 1B1|syntaxin 1B2" Syntaxins 818 2002-04-26 2007-06-20 2007-06-20 2016-10-05 112755 ENSG00000099365 OTTHUMG00000132391 uc010cad.3 AY028792 XM_017022893 CCDS10699 P61266 MGI:1930705 RGD:3784 STX1B 601485 419164 +HGNC:3403 STX2 syntaxin 2 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 EPM "STX2B|STX2C|STX2A|EPIM" epimorphin Syntaxins 818 1994-07-04 2006-04-25 2006-04-25 2016-10-05 2054 ENSG00000111450 OTTHUMG00000168365 uc001uio.6 D14582 NM_194356 "CCDS9269|CCDS9270" P32856 "8938452|15943887" MGI:108059 RGD:2558 STX2 132350 +HGNC:11438 STX3 syntaxin 3 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 STX3A syntaxin 3A Syntaxins 818 1995-11-23 2006-04-25 2006-04-25 2014-11-18 6809 ENSG00000166900 OTTHUMG00000167353 uc001nog.4 AJ002076 NM_004177 "CCDS7975|CCDS53637" Q13277 "16598260|16339081" MGI:103077 RGD:621005 STX3 600876 406595 +HGNC:11439 STX4 syntaxin 4 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 p35-2 STX4A syntaxin 4A (placental) Syntaxins 818 1995-11-23 2006-04-25 2006-04-25 2014-11-18 6810 ENSG00000103496 OTTHUMG00000132404 uc002eal.5 AF026007 NM_004604 "CCDS10700|CCDS61916" Q12846 "8206394|16339081" MGI:893577 RGD:621019 STX4 186591 +HGNC:11440 STX5 syntaxin 5 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 SED5 STX5A syntaxin 5A Syntaxins 818 1995-11-23 2006-04-25 2006-04-25 2014-11-19 6811 ENSG00000162236 OTTHUMG00000143864 uc001nvh.4 U26648 NM_003164 "CCDS8038|CCDS58140|CCDS81578" Q13190 "9188044|11959998" MGI:1928483 RGD:68426 STX5 603189 +HGNC:11441 STX6 syntaxin 6 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 Syntaxins 818 1998-11-30 2014-11-18 10228 ENSG00000135823 OTTHUMG00000035179 uc021pfr.3 AJ002078 NM_005819 "CCDS1341|CCDS65738" O43752 10080545 MGI:1926235 RGD:61915 STX6 603944 +HGNC:11442 STX7 syntaxin 7 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 Syntaxins 818 1998-11-30 2016-10-05 8417 ENSG00000079950 OTTHUMG00000015577 uc003qdg.3 U77942 NM_001326580 CCDS5153 O15400 9358037 MGI:1858210 RGD:619747 STX7 603217 +HGNC:11443 STX8 syntaxin 8 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 CARB Syntaxins 818 1999-04-15 2015-08-26 9482 ENSG00000170310 OTTHUMG00000177844 uc002glx.4 AF115323 NM_004853 CCDS32565 Q9UNK0 "9852078|10198254" MGI:1890156 RGD:61917 STX8 604203 +HGNC:49855 STX8P1 syntaxin 8 pseudogene 1 pseudogene pseudogene Approved 12p13.1 12p13.1 2014-03-18 2014-03-18 100423046 ENSG00000270296 OTTHUMG00000184726 NG_021191 PGOHUM00000239354 +HGNC:11428 STX10 syntaxin 10 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "hsyn10|SYN10" Syntaxins 818 1998-11-30 2014-11-19 8677 ENSG00000104915 OTTHUMG00000180759 uc002mwo.5 AF035531 NM_003765 "CCDS32922|CCDS62569|CCDS62570|CCDS62571" O60499 9446797 STX10 603765 +HGNC:11429 STX11 syntaxin 11 protein-coding gene gene with protein product Approved 6q24.2 06q24.2 Syntaxins 818 1998-11-30 2016-10-12 8676 ENSG00000135604 OTTHUMG00000015739 uc003qks.5 AF044309 XM_011536213 CCDS5205 O75558 9553086 MGI:1921982 RGD:1304744 "STX11base: Mutation registry for Familial haemophagocytic lymphohistiocytosis 4 (FHL4)|http://structure.bmc.lu.se/idbase/STX11base/|LRG_113|http://www.lrg-sequence.org/LRG/LRG_113" STX11 605014 119892 +HGNC:11430 STX12 syntaxin 12 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "STX13|STX14" Syntaxins 818 1998-11-30 2014-12-16 23673 ENSG00000117758 OTTHUMG00000003730 uc001bou.4 BC046999 NM_177424 CCDS310 Q86Y82 9507000 MGI:1931027 RGD:620977 STX12 606892 +HGNC:11431 STX16 syntaxin 16 protein-coding gene gene with protein product Approved 20q13.32 20q13.32 "hsyn16|SYN16" Syntaxins 818 1998-11-30 2014-11-18 8675 ENSG00000124222 OTTHUMG00000033084 uc002xzi.4 AF038897 NM_001001433 "CCDS13468|CCDS13469|CCDS46619|CCDS46620|CCDS56199" O14662 "9464276|9587053|15800843" MGI:1923396 RGD:1309423 STX16 603666 167897 +HGNC:41993 STX16-NPEPL1 STX16-NPEPL1 readthrough (NMD candidate) other readthrough Approved 20q13.32 20q13.32 2011-05-31 2013-05-09 2014-11-19 100534593 ENSG00000254995 OTTHUMG00000167390 uc061yan.1 NR_037945.1 +HGNC:11432 STX17 syntaxin 17 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 FLJ20651 Syntaxins 818 1998-12-03 2015-08-26 55014 ENSG00000136874 OTTHUMG00000020359 uc004bal.5 AL834371 NM_017919 CCDS6745 P56962 9852078 MGI:1914977 RGD:708499 STX17 604204 +HGNC:51174 STX17-AS1 STX17 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q31.1 09q31.1 2014-07-31 2014-07-31 441461 ENSG00000255145 OTTHUMG00000166238 BC030123 NR_038853 +HGNC:15942 STX18 syntaxin 18 protein-coding gene gene with protein product Approved 4p16.3-p16.2 04p16.3-p16.2 Ufe1 Syntaxins 818 2001-07-18 2016-10-11 53407 ENSG00000168818 OTTHUMG00000090331 uc003gic.4 AB028741 XM_017008296 CCDS3377 Q9P2W9 10788491 MGI:1918366 RGD:1310058 STX18 606046 +HGNC:48877 STX18-AS1 STX18 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4p16.2 04p16.2 LOC100507266 2013-06-15 2013-06-21 100507266 ENSG00000247708 OTTHUMG00000159923 NR_037888 23708191 +HGNC:41415 STX18-IT1 STX18 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 4p16.3 04p16.3 STX18 intronic transcript 1 (non-protein coding) 2011-05-31 2015-02-25 2015-02-25 104472519 ENSG00000248221 OTTHUMG00000159966 uc062uwo.1 NR_126434 +HGNC:43995 STX18P1 syntaxin 18 pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 2012-05-25 2012-05-25 100418889 NG_026236 PGOHUM00000237342 +HGNC:19300 STX19 syntaxin 19 protein-coding gene gene with protein product Approved 3q11.2 03q11.2 MGC21382 Syntaxins 818 2005-12-30 2016-10-05 415117 ENSG00000178750 OTTHUMG00000159013 uc003drh.2 AF461456 NM_001001850 CCDS33793 Q8N4C7 20545907 MGI:1915409 RGD:1597703 STX19 +HGNC:11444 STXBP1 syntaxin binding protein 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "hUNC18|MUNC18-1|UNC18|rbSec1" syntaxin-binding protein 1 1996-12-27 2016-10-05 6812 ENSG00000136854 OTTHUMG00000020713 uc004brl.3 AF004563 NM_003165 "CCDS6874|CCDS35146" P61764 9545644 MGI:107363 RGD:3785 STXBP1 602926 166683 +HGNC:11445 STXBP2 syntaxin binding protein 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "UNC18B|Hunc18b" 1996-12-27 2016-10-12 6813 ENSG00000076944 OTTHUMG00000182396 uc002mha.6 U63533 NM_006949 "CCDS12181|CCDS45948|CCDS62522" Q15833 8921365 MGI:107370 RGD:619967 LRG_165|http://www.lrg-sequence.org/LRG/LRG_165 STXBP2 601717 227102 +HGNC:11446 STXBP3 syntaxin binding protein 3 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 UNC-18C 1996-12-27 2014-11-19 6814 ENSG00000116266 OTTHUMG00000011122 uc001dvy.4 D63506 NM_007269 CCDS790 O00186 10194441 MGI:107362 RGD:619968 STXBP3 608339 +HGNC:19694 STXBP4 syntaxin binding protein 4 protein-coding gene gene with protein product Approved 17q22 17q22 "Synip|MGC50337" PDZ domain containing 1220 2004-01-15 2014-11-19 252983 ENSG00000166263 OTTHUMG00000074043 uc002iuf.2 BC041485 NM_178509 CCDS11584 Q6ZWJ1 12855681 MGI:1342296 RGD:1307903 STXBP4 610415 +HGNC:19665 STXBP5 syntaxin binding protein 5 protein-coding gene gene with protein product Approved 6q24.3 06q24.3 "tomosyn|LLGL3" WD repeat domain containing 362 2002-11-12 2016-01-19 2016-01-19 134957 ENSG00000164506 OTTHUMG00000015766 uc010khz.3 AK055484 XR_001743163 "CCDS5211|CCDS47499" Q5T5C0 "9620695|14767561" MGI:1926058 RGD:708517 STXBP5 604586 +HGNC:44183 STXBP5-AS1 STXBP5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q24.3 06q24.3 STXBP5 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 729178 ENSG00000233452 OTTHUMG00000015762 uc063scl.1 BC044307 NR_034115 +HGNC:30757 STXBP5L syntaxin binding protein 5 like protein-coding gene gene with protein product Approved 3q13.33 03q13.33 "KIAA1006|LLGL4" syntaxin binding protein 5-like WD repeat domain containing 362 2004-03-05 2015-11-17 2016-10-05 9515 ENSG00000145087 OTTHUMG00000159426 uc003eec.5 AB023223 XM_006713825 "CCDS43137|CCDS77799" Q9Y2K9 "10231032|14767561" MGI:2443815 RGD:1311561 STXBP5L 609381 +HGNC:19666 STXBP6 syntaxin binding protein 6 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "amisyn|HSPC156" 2002-11-12 2016-01-19 2016-01-19 29091 ENSG00000168952 OTTHUMG00000140186 uc001wpw.5 AF161505 XM_017021231 CCDS9634 Q8NFX7 12145319 MGI:2384963 RGD:1306117 STXBP6 607958 +HGNC:18889 STYK1 serine/threonine/tyrosine kinase 1 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "SuRTK106|DKFZp761P1010|NOK" Receptor Tyrosine Kinases 321 2005-01-21 2016-07-08 55359 ENSG00000060140 OTTHUMG00000168408 uc001qys.2 AF251059 NM_018423 CCDS8629 Q6J9G0 12841579 MGI:2141396 RGD:1564211 STYK1 611433 objectId:2229 2.7.10.2 +HGNC:11447 STYX serine/threonine/tyrosine interacting protein protein-coding gene gene with protein product Approved 14q22.1 14q22.1 serine/threonine/tyrosine-interacting protein Atypical dual specificity phosphatases 896 1998-08-05 2001-11-29 2015-09-08 6815 ENSG00000198252 OTTHUMG00000140306 uc001xaa.4 NM_145251 CCDS9711 Q8WUJ0 7592916 MGI:1891150 RGD:1594806 STYX 615814 +HGNC:18165 STYXL1 serine/threonine/tyrosine interacting like 1 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 MK-STYX DUSP24 dual specificity phosphatase 24 (putative) MAP kinase phosphatases 895 2005-01-20 2005-09-22 2016-07-27 2016-07-27 51657 ENSG00000127952 OTTHUMG00000130459 uc003uel.4 AF069762 NM_016086 "CCDS5580|CCDS83193" Q9Y6J8 9757831 MGI:1923821 RGD:1305845 STYXL1 616695 +HGNC:19985 SUB1 SUB1 homolog, transcriptional regulator protein-coding gene gene with protein product Approved 5p13.3 05p13.3 "PC4|p15|p14" positive cofactor 4 SUB1 homolog (S. cerevisiae) 2005-08-19 2015-09-23 2015-09-23 10923 ENSG00000113387 OTTHUMG00000131071 uc063ctm.1 X79805 NM_006713 CCDS3897 P53999 "8062392|8062391" MGI:104811 RGD:621582 SUB1 600503 +HGNC:32300 SUB1P1 SUB1 homolog, transcriptional regulator pseudogene 1 pseudogene pseudogene Approved 8p23.1 08p23.1 "SUB1 homolog (S. cerevisiae) pseudogene 1|SUB1 pseudogene 1" 2005-10-04 2015-09-24 2015-09-24 728938 ENSG00000227203 OTTHUMG00000165367 NG_007169 PGOHUM00000249564 +HGNC:43992 SUB1P2 SUB1 homolog, transcriptional regulator pseudogene 2 pseudogene pseudogene Approved 14q24.3 14q24.3 "SUB1 homolog (S. cerevisiae) pseudogene 2|SUB1 pseudogene 2" 2012-05-25 2015-09-24 2015-09-24 100287680 ENSG00000258737 OTTHUMG00000171209 NG_022860 PGOHUM00000248229 +HGNC:43993 SUB1P3 SUB1 homolog, transcriptional regulator pseudogene 3 pseudogene pseudogene Approved 16p13.3 16p13.3 "SUB1 homolog (S. cerevisiae) pseudogene 3|SUB1 pseudogene 3" 2012-05-25 2015-09-24 2015-09-24 106480442 ENSG00000261612 OTTHUMG00000176542 NG_043392 PGOHUM00000248708 +HGNC:43994 SUB1P4 SUB1 homolog, transcriptional regulator pseudogene 4 pseudogene pseudogene Approved 16p12.2 16p12.2 "SUB1 homolog (S. cerevisiae) pseudogene 4|SUB1 pseudogene 4" 2012-05-25 2015-09-24 2015-09-24 100288661 ENSG00000260247 OTTHUMG00000177019 NG_027752 PGOHUM00000249022 +HGNC:11448 SUCLA2 succinate-CoA ligase ADP-forming beta subunit protein-coding gene gene with protein product Approved 13q14.2 13q14.2 succinate--CoA ligase (ADP-forming) succinate-CoA ligase, ADP-forming, beta subunit 1998-11-11 2016-04-29 2016-04-29 8803 ENSG00000136143 OTTHUMG00000016889 uc001vbs.4 AF058953 XM_017020806 CCDS9406 Q9P2R7 9765291 MGI:1306775 RGD:1309397 SUCLA2 603921 119894 6.2.1.5 +HGNC:39965 SUCLA2-AS1 SUCLA2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.2 13q14.2 SUCLA2 antisense RNA 1 (non-protein coding) 2011-04-18 2012-08-15 2014-11-19 101929410 ENSG00000227848 OTTHUMG00000016887 uc058wxx.1 +HGNC:21632 SUCLA2P1 succinate-CoA ligase ADP-forming beta subunit pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 Em:AB014080.4 SUCLA2P succinate-CoA ligase beta subunit pseudogene 1 2004-01-12 2010-04-16 2016-04-29 2016-04-29 646520 ENSG00000224936 OTTHUMG00000031145 NG_022351 PGOHUM00000243575 +HGNC:38102 SUCLA2P2 succinate-CoA ligase ADP-forming beta subunit pseudogene 2 pseudogene pseudogene Approved 2p12 02p12 2010-04-19 2016-04-29 2016-04-29 100129863 ENSG00000233107 OTTHUMG00000152944 NG_021507 PGOHUM00000264484 +HGNC:38103 SUCLA2P3 succinate-CoA ligase ADP-forming beta subunit pseudogene 3 pseudogene pseudogene Approved 2p23 02p23 2010-04-19 2016-04-29 2016-04-29 100421648 ENSG00000229593 OTTHUMG00000151987 NG_021497 PGOHUM00000239992 +HGNC:11449 SUCLG1 succinate-CoA ligase alpha subunit protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "succinate-CoA ligase, GDP-forming, alpha subunit|succinate-CoA ligase, alpha subunit" 1998-11-11 2016-04-29 2016-10-05 8802 ENSG00000163541 OTTHUMG00000130023 uc002son.4 Z68204 NM_003849 CCDS1967 P53597 9128182 MGI:1927234 RGD:619821 SUCLG1 611224 158461 6.2.1.4 +HGNC:11450 SUCLG2 succinate-CoA ligase GDP-forming beta subunit protein-coding gene gene with protein product Approved 3p14.1 03p14.1 1998-11-11 2016-04-29 2016-10-05 8801 ENSG00000172340 OTTHUMG00000158740 uc003dna.5 AF058954 NM_003848 "CCDS43104|CCDS54605" Q96I99 9765291 MGI:1306824 RGD:1305008 SUCLG2 603922 6.2.1.4 +HGNC:49643 SUCLG2-AS1 SUCLG2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 2014-01-28 2014-01-28 2014-02-12 101927111 ENSG00000241316 OTTHUMG00000158739 NR_109992 +HGNC:43996 SUCLG2P1 succinate-CoA ligase GDP-forming beta subunit pseudogene 1 pseudogene pseudogene Approved 3q23 03q23 2012-05-25 2016-04-29 2016-04-29 100421671 NG_025634 PGOHUM00000237799 +HGNC:43997 SUCLG2P2 succinate-CoA ligase GDP-forming beta subunit pseudogene 2 pseudogene pseudogene Approved 12q22 12q22 2012-05-25 2016-04-29 2016-04-29 283398 ENSG00000236349 OTTHUMG00000170229 NG_017133 PGOHUM00000239896 +HGNC:43998 SUCLG2P3 succinate-CoA ligase GDP-forming beta subunit pseudogene 3 pseudogene pseudogene Approved 11q22.3 11q22.3 2012-05-25 2016-04-29 2016-04-29 100421712 NG_024413 PGOHUM00000242466 +HGNC:43999 SUCLG2P4 succinate-CoA ligase GDP-forming beta subunit pseudogene 4 pseudogene pseudogene Approved 5p13.3 05p13.3 2012-05-25 2016-04-29 2016-04-29 100130528 ENSG00000249226 OTTHUMG00000160376 NG_017131 PGOHUM00000235537 +HGNC:4542 SUCNR1 succinate receptor 1 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 GPR91 G protein-coupled receptor 91 Succinate receptor 936 2000-07-31 2004-07-09 2004-07-08 2014-11-19 56670 ENSG00000198829 OTTHUMG00000159880 uc003ezf.3 AF348078 NM_033050 CCDS3162 Q9BXA5 "11273702|15141213|17192395" MGI:1934135 RGD:1303193 SUCNR1 606381 objectId:166 +HGNC:1240 SUCO SUN domain containing ossification factor protein-coding gene gene with protein product Approved 1q24.3 01q24.3 "CH1|SLP1|OPT" "SUN-like protein 1|osteopotentia" C1orf9 chromosome 1 open reading frame 9 1999-09-29 2012-07-10 2012-07-10 2016-10-05 51430 ENSG00000094975 OTTHUMG00000034839 uc001giq.6 AF097535 NM_016227 "CCDS1303|CCDS65726|CCDS65727|CCDS72984" Q9UBS9 "10673381|20440000" MGI:2138346 RGD:735185 +HGNC:29545 SUDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "SDS3|FLJ00052|SAP45" sin3A-associated protein, 45kDa "suppressor of defective silencing 3 homolog (SDS3, S. cerevisiae)|suppressor of defective silencing 3 homolog (S. cerevisiae)" 2006-01-27 2015-09-24 2015-09-24 64426 ENSG00000111707 OTTHUMG00000168884 uc001twz.4 AK023801 NM_022491 CCDS44993 Q9H7L9 11909966 MGI:1919204 RGD:1305986 SUDS3 608250 +HGNC:44000 SUDS3P1 SDS3 homolog, SIN3A corepressor complex component pseudogene 1 pseudogene pseudogene Approved 5q35.3 05q35.3 "suppressor of defective silencing 3 homolog (S. cerevisiae) pseudogene 1|SUDS3 pseudogene 1" 2012-05-25 2015-09-24 2015-09-24 285647 ENSG00000249129 OTTHUMG00000163458 NG_005309 PGOHUM00000235854 +HGNC:16466 SUFU SUFU negative regulator of hedgehog signaling protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "SUFUH|SUFUXL|PRO1280" suppressor of fused homolog (Drosophila) 2001-08-28 2016-01-15 2016-10-12 51684 ENSG00000107882 OTTHUMG00000018966 uc001kvy.3 AF175770 NM_016169 "CCDS7537|CCDS53571" Q9UMX1 15367681 MGI:1345643 RGD:1559462 LRG_521|http://www.lrg-sequence.org/LRG/LRG_521 SUFU 607035 119896 +HGNC:16001 SUGCT succinyl-CoA:glutarate-CoA transferase protein-coding gene gene with protein product Approved 7p14.1 07p14.1 "FLJ11808|ORF19|DERP13" "Russel-Silver syndrome candidate|dermal papilla derived protein 13" C7orf10 chromosome 7 open reading frame 10 2002-02-13 2013-12-12 2014-04-29 2016-10-05 79783 ENSG00000175600 OTTHUMG00000155094 AK021870 NM_024728 "CCDS55105|CCDS55106|CCDS55104" Q9HAC7 "11829489|23893049" MGI:1923221 RGD:1308114 609187 169960 2.8.3.13 +HGNC:18643 SUGP1 SURP and G-patch domain containing 1 protein-coding gene gene with protein product Approved 19p13 19p13 "F23858|DKFZp434E2216|RBP" SF4 splicing factor 4 G-patch domain containing 579 2003-04-11 2010-08-10 2015-11-13 2015-11-13 57794 ENSG00000105705 OTTHUMG00000182223 uc002nmh.4 AF521128 NM_021164 CCDS12399 Q8IWZ8 12594045 MGI:1917866 RGD:1310496 SUGP1 607992 +HGNC:18641 SUGP2 SURP and G-patch domain containing 2 protein-coding gene gene with protein product Approved 19p13 19p13 KIAA0365 SFRS14 splicing factor, arginine/serine-rich 14 G-patch domain containing 579 2003-04-09 2010-08-10 2015-11-13 2015-11-13 10147 ENSG00000064607 OTTHUMG00000182997 uc002nkx.3 AB002363 NM_001017392 "CCDS12392|CCDS82322" Q8IX01 12594045 MGI:2678085 RGD:1306042 SUGP2 607993 +HGNC:16987 SUGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding gene gene with protein product Approved 13q14.3 13q14.3 SGT1 SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae) 2002-11-13 2015-09-24 2015-09-24 10910 ENSG00000165416 OTTHUMG00000016977 uc001vhb.3 AF068289 NM_001130912 "CCDS9436|CCDS45050" Q9Y2Z0 "10445024|20404110" MGI:1915205 RGD:1307550 SUGT1 604098 +HGNC:19384 SUGT1P1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 1 pseudogene pseudogene Approved 9p13.3 09p13.3 "bA255A11.1|SGT1P|MGC15151" SUGT1P "suppressor of G2 allele of SKP1 pseudogene (S. cerevisiae)|suppressor of G2 allele of SKP1 pseudogene 1 (S. cerevisiae)|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 1|SUGT1 pseudogene 1" 2002-11-13 2010-01-12 2015-09-24 2016-08-17 441394 ENSG00000226823 OTTHUMG00000019782 AL139008 NR_003667 +HGNC:31377 SUGT1P2 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 2 pseudogene pseudogene Approved 3p22.3 03p22.3 "suppressor of G2 allele of SKP1 pseudogene 2 (S. cerevisiae)|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 2|SUGT1 pseudogene 2" 2006-03-22 2015-09-24 2016-08-17 728706 ENSG00000213842 OTTHUMG00000155904 AC138972 NG_006446 PGOHUM00000299391 +HGNC:20513 SUGT1P3 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 3 pseudogene pseudogene Approved 13q14.11 13q14.11 SUGT1L1 "SGT1, suppressor of G2 allele of SKP1 like 1 (S. cerevisiae)|suppressor of G2 allele of SKP1 (S. cerevisiae) pseudogene 3|SUGT1 pseudogene 3" 2003-02-19 2010-10-27 2015-09-24 2016-08-17 283507 ENSG00000239827 OTTHUMG00000016780 NR_003365 SUGT1P3 PGOHUM00000291935 +HGNC:20391 SULF1 sulfatase 1 protein-coding gene gene with protein product Approved 8q13.2-q13.3 08q13.2-q13.3 "KIAA1077|SULF-1" Sulfatases 410 2004-01-26 2016-10-11 23213 ENSG00000137573 OTTHUMG00000164466 uc003xyd.3 AB029000 NM_015170 CCDS6204 Q8IWU6 12368295 MGI:2138563 RGD:708554 SULF1 610012 +HGNC:20392 SULF2 sulfatase 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "KIAA1247|HSULF-2|SULF-2" Sulfatases 410 2004-01-26 2016-04-25 55959 ENSG00000196562 OTTHUMG00000032675 uc002xto.4 AY101176 NM_018837 "CCDS13408|CCDS13409" Q8IWU5 12368295 MGI:1919293 RGD:1305078 SULF2 610013 +HGNC:11453 SULT1A1 sulfotransferase family 1A member 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 P-PST "STP|STP1" sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 Sulfotransferases, cytosolic 762 1993-08-23 2015-11-06 2016-10-05 6817 ENSG00000196502 OTTHUMG00000131765 uc002dqp.4 U52852 NM_001055 "CCDS10637|CCDS32420" P50225 "8288252|8912648" MGI:102896 RGD:3767 SULT1A1 171150 2.8.2.1 +HGNC:11454 SULT1A2 sulfotransferase family 1A member 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 HAST4 STP2 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 2 Sulfotransferases, cytosolic 762 1995-08-22 2015-11-06 2016-10-05 6799 ENSG00000197165 OTTHUMG00000048082 uc002dqh.3 U34804 NM_001054 CCDS10636 P50226 "8661000|8912648" SULT1A2 601292 2.8.2.1 +HGNC:11455 SULT1A3 sulfotransferase family 1A member 3 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 TL-PST STM sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3 Sulfotransferases, cytosolic 762 1994-05-18 2015-11-06 2015-11-06 6818 ENSG00000261052 OTTHUMG00000048083 uc002dxk.4 U20499 NM_003166 CCDS10674 P0DMM9 "8117269|7829089" SULT1A3 600641 2.8.2.1 +HGNC:30004 SULT1A4 sulfotransferase family 1A member 4 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4 Sulfotransferases, cytosolic 762 2005-05-05 2015-11-06 2015-11-06 445329 ENSG00000213648 OTTHUMG00000170468 uc002dtb.4 L34160 NM_001017389 CCDS32427 P0DMN0 "15358107|15752422" SULT1A4 615819 2.8.2.1 +HGNC:17845 SULT1B1 sulfotransferase family 1B member 1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 ST1B2 sulfotransferase family, cytosolic, 1B, member 1 Sulfotransferases, cytosolic 762 2002-01-10 2015-11-06 2015-11-06 27284 ENSG00000173597 OTTHUMG00000129407 uc003hen.4 D89479 NM_014465 CCDS3530 O43704 "11688987|9443824" MGI:2136282 RGD:708534 SULT1B1 608436 +HGNC:11456 SULT1C2 sulfotransferase family 1C member 2 protein-coding gene gene with protein product Approved 2q12.3 02q12.3 ST1C1 SULT1C1 "sulfotransferase family, cytosolic, 1C, member 1|sulfotransferase family, cytosolic, 1C, member 2" Sulfotransferases, cytosolic 762 1997-01-10 2007-03-16 2015-11-06 2015-11-06 6819 ENSG00000198203 OTTHUMG00000153215 uc002tdy.3 "U66036|AF186255" NM_176825 "CCDS2075|CCDS2076" O00338 "9169148|10783263" MGI:1916333 RGD:6497849 SULT1C2 602385 +HGNC:33545 SULT1C2P1 sulfotransferase family 1C member 2 pseudogene 1 pseudogene pseudogene Approved 2q12.3 02q12.3 SULT1C1P sulfotransferase family, cytosolic, 1C, member 2 pseudogene 1 2010-09-30 2015-11-06 2015-11-06 151234 ENSG00000237223 OTTHUMG00000153216 AK056906 NR_037191 14676822 PGOHUM00000240839 +HGNC:51595 SULT1C2P2 sulfotransferase family, cytosolic, 1C, member 2 pseudogene 2 pseudogene pseudogene Approved 2q12.3 02q12.3 2015-03-12 2015-03-17 106480333 ENSG00000261209 OTTHUMG00000176329 NG_045175 PGOHUM00000298615 +HGNC:33543 SULT1C3 sulfotransferase family 1C member 3 protein-coding gene gene with protein product Approved 2q12.3 02q12.3 sulfotransferase family, cytosolic, 1C, member 3 Sulfotransferases, cytosolic 762 2007-07-26 2015-11-06 2015-11-06 442038 ENSG00000196228 OTTHUMG00000153227 uc010ywo.2 BC146362 NM_001008743 CCDS33267 Q6IMI6 "14676822|17425406" MGI:102928 RGD:3768 SULT1C3 +HGNC:11457 SULT1C4 sulfotransferase family 1C member 4 protein-coding gene gene with protein product Approved 2q12.3 02q12.3 SULT1C SULT1C2 "sulfotransferase family, cytosolic, 1C, member 2|sulfotransferase family, cytosolic, 1C, member 4" Sulfotransferases, cytosolic 762 2000-01-21 2007-03-16 2015-11-06 2015-11-06 27233 ENSG00000198075 OTTHUMG00000130958 uc002tea.2 AF055584 NM_006588 "CCDS2077|CCDS82492" O75897 "10783263|9852044" MGI:102928 RGD:6499500 SULT1C4 608357 +HGNC:30659 SULT1D1P sulfotransferase family 1D member 1, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 SULT1D1 "tyrosine-ester sulfotransferase|amine N-sulfotransferase" sulfotransferase family, cytosolic, 1D, member 1, pseudogene Sulfotransferases, cytosolic 762 2007-03-12 2015-11-06 2016-10-05 133150 ENSG00000236959 OTTHUMG00000154682 BK001433 NG_002642 "11688987|14676822" MGI:1926341 +HGNC:11377 SULT1E1 sulfotransferase family 1E member 1 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 EST STE "sulfotransferase, estrogen-preferring|sulfotransferase family 1E, estrogen-preferring, member 1" Sulfotransferases, cytosolic 762 1994-05-18 2004-02-04 2015-11-06 2016-10-05 6783 ENSG00000109193 OTTHUMG00000129403 uc003heo.3 BC027956 NM_005420 CCDS3531 P49888 7961757 MGI:98431 RGD:1597142 SULT1E1 600043 2.8.2.4 +HGNC:11458 SULT2A1 sulfotransferase family 2A member 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 DHEA-ST STD sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 Sulfotransferases, cytosolic 762 1994-03-03 2015-11-06 2016-10-05 6822 ENSG00000105398 OTTHUMG00000162469 uc002phr.2 X70222 NM_003167 CCDS12707 Q06520 "1588921|7736787" "MGI:98430|MGI:107550|MGI:3645873|MGI:3645854|MGI:3648378|MGI:3648915|MGI:3645246|MGI:1924221" RGD:621337 SULT2A1 125263 2.8.2.2 +HGNC:11459 SULT2B1 sulfotransferase family 2B member 1 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 HSST2 sulfotransferase family, cytosolic, 2B, member 1 Sulfotransferases, cytosolic 762 1998-08-18 2015-11-06 2015-11-06 6820 ENSG00000088002 OTTHUMG00000183314 uc002pjl.4 U92314 NM_004605 "CCDS12723|CCDS12724" O00204 9799594 MGI:1926342 RGD:1308882 SULT2B1 604125 +HGNC:14903 SULT4A1 sulfotransferase family 4A member 1 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "SULTX3|hBR-STL-1" sulfotransferase family 4A, member 1 Sulfotransferases, cytosolic 762 2001-03-14 2015-11-06 2016-10-05 25830 ENSG00000130540 OTTHUMG00000141314 uc003bee.2 AF188698 NM_014351 CCDS14051 Q9BR01 10698717 MGI:1888971 RGD:69292 SULT4A1 608359 +HGNC:33433 SULT6B1 sulfotransferase family 6B member 1 protein-coding gene gene with protein product Approved 2p22.2 02p22.2 sulfotransferase family, cytosolic, 6B, member 1 Sulfotransferases, cytosolic 762 2007-07-26 2015-11-06 2015-11-06 391365 ENSG00000138068 OTTHUMG00000152160 uc002rpu.4 "AY289770|AY289774" NM_001032377 CCDS33182 Q6IMI4 14676822 MGI:1920921 RGD:1598187 SULT6B1 +HGNC:11452 SULT entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-03-13 +HGNC:20376 SUMF1 sulfatase modifying factor 1 protein-coding gene gene with protein product Approved 3p26.1 03p26.1 "FGE|UNQ3037" 2004-04-30 2014-11-18 285362 ENSG00000144455 OTTHUMG00000090269 uc003bpz.3 BC017005 NM_182760 "CCDS2564|CCDS54548|CCDS54549" Q8NBK3 "12757705|12757706" MGI:1889844 RGD:1309939 SUMF1 607939 119899 +HGNC:20415 SUMF2 sulfatase modifying factor 2 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 DKFZp566I1024 2004-04-30 2016-10-05 25870 ENSG00000129103 OTTHUMG00000129373 uc011kcw.3 AK075477 NM_015411 "CCDS5524|CCDS43588|CCDS43589|CCDS47589|CCDS55111" Q8NBJ7 12757706 MGI:1915152 RGD:1563253 SUMF2 607940 +HGNC:12502 SUMO1 small ubiquitin-like modifier 1 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "PIC1|GMP1|SMT3C|SUMO-1|SMT3H3|OFC10" UBL1 "ubiquitin-like 1 (sentrin)|SMT3 suppressor of mif two 3 homolog 1 (yeast)|SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)" 1996-06-04 2004-05-19 2013-06-05 2016-10-05 7341 ENSG00000116030 OTTHUMG00000132839 uc002uyz.2 U38784 NM_003352 "CCDS2352|CCDS46493" P63165 "8812453|8906799" MGI:1197010 RGD:1306919 SUMO1 601912 138689 +HGNC:33148 SUMO1P1 SUMO1 pseudogene 1 pseudogene pseudogene Approved 20q13.2 20q13.2 PIC1L "UBL2|UBL6" "ubiquitin-like 2|ubiquitin-like 6" 2006-10-16 2014-11-19 391257 ENSG00000241721 OTTHUMG00000032770 NR_002189 "12383504|9465300" SUMO1P1 PGOHUM00000247564 +HGNC:33149 SUMO1P2 SUMO1 pseudogene 2 pseudogene pseudogene Approved 1q24.2 01q24.2 2006-10-16 2014-11-19 474337 ENSG00000229612 OTTHUMG00000034587 NG_004725 "12383504|9465300" PGOHUM00000245077 +HGNC:33150 SUMO1P3 SUMO1 pseudogene 3 pseudogene pseudogene Approved 1q23.2 01q23.2 SUMO1 pseudogene 3 (functional) Transcribed pseudogenes with published function 859 2006-10-16 2016-01-29 2016-01-29 474338 ENSG00000235082 OTTHUMG00000033120 NR_002190 "12383504|9465300|23996296" +HGNC:33151 SUMO1P4 SUMO1 pseudogene 4 pseudogene pseudogene Approved 19q13.33 19q13.33 2006-10-16 2016-10-05 101290502 ENSG00000235555 OTTHUMG00000154914 NG_033172 "12383504|9465300" PGOHUM00000234734 +HGNC:33152 SUMO1P5 SUMO1 pseudogene 5 pseudogene pseudogene Approved 5q23.2 05q23.2 2007-12-20 2007-12-20 474341 NG_021192 "12383504|9465300" +HGNC:11125 SUMO2 small ubiquitin-like modifier 2 protein-coding gene gene with protein product Approved 17q25 17q25 SMT3B SMT3H2 "SMT3 (suppressor of mif two 3, yeast) homolog 2|SMT3 suppressor of mif two 3 homolog 2 (yeast)|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae)" 1997-01-29 2004-05-19 2013-06-05 2015-09-09 6613 ENSG00000188612 OTTHUMG00000179481 uc002jne.4 NM_006937 "CCDS45773|CCDS45774" P61956 8630065 MGI:2158813 RGD:621761 SUMO2 603042 +HGNC:13985 SUMO2P1 SUMO2 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "SMT3Bp|dJ271M21" "SMT3H2P|SUMO2P" "SMT3 (suppressor of mif two 3, yeast) homolog 2 pseudogene|SMT3 suppressor of mif two 3 homolog 2 (yeast) pseudogene|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene|SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 1" 2003-05-22 2010-07-07 2013-06-05 2014-11-19 285829 ENSG00000235238 OTTHUMG00000031140 NG_002750 PGOHUM00000243124 +HGNC:39012 SUMO2P2 SUMO2 pseudogene 2 pseudogene pseudogene Approved 9p21.3 09p21.3 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 2 2010-09-21 2013-06-05 2014-11-19 100859924 ENSG00000227607 OTTHUMG00000019697 NG_031946 PGOHUM00000236414 +HGNC:39013 SUMO2P3 SUMO2 pseudogene 3 pseudogene pseudogene Approved 7p11.2 07p11.2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 3 2010-09-21 2013-06-05 2013-06-05 652489 ENSG00000224971 OTTHUMG00000156130 NG_005815 PGOHUM00000233241 +HGNC:39014 SUMO2P4 SUMO2 pseudogene 4 pseudogene pseudogene Approved 5q13.1 05q13.1 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 4 2010-09-21 2013-06-05 2014-11-19 100288757 ENSG00000249183 OTTHUMG00000162383 NG_028715 PGOHUM00000235249 +HGNC:39015 SUMO2P5 SUMO2 pseudogene 5 pseudogene pseudogene Approved 5q13.3 05q13.3 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 5 2010-09-21 2013-06-05 2014-11-19 100526738 ENSG00000251663 OTTHUMG00000162466 NG_027890 PGOHUM00000235655 +HGNC:39016 SUMO2P6 SUMO2 pseudogene 6 pseudogene pseudogene Approved 5q35.2 05q35.2 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 6 2010-09-21 2013-06-05 2014-11-19 100127922 ENSG00000249031 OTTHUMG00000163126 NG_027875 PGOHUM00000235838 +HGNC:39017 SUMO2P7 SUMO2 pseudogene 7 pseudogene pseudogene Approved 17q21.33 17q21.33 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 7 2010-09-21 2013-06-05 2016-10-05 100131823 ENSG00000249838 OTTHUMG00000162059 NG_027891 PGOHUM00000237432 +HGNC:39018 SUMO2P8 SUMO2 pseudogene 8 pseudogene pseudogene Approved 6q21 06q21 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) pseudogene 8 2010-09-21 2013-06-05 2014-11-19 100506244 ENSG00000228976 OTTHUMG00000015326 NG_029319 PGOHUM00000243319 +HGNC:49348 SUMO2P10 SUMO2 pseudogene 10 pseudogene pseudogene Approved 3p22.3 03p22.3 2013-10-18 2013-10-18 2013-10-18 106481678 ENSG00000235424 OTTHUMG00000155777 NG_043021 PGOHUM00000263121 +HGNC:49349 SUMO2P11 SUMO2 pseudogene 11 pseudogene pseudogene Approved 4q21.1 04q21.1 2013-10-18 2013-10-18 100422250 NG_025228 PGOHUM00000245969 +HGNC:49350 SUMO2P12 SUMO2 pseudogene 12 pseudogene pseudogene Approved 6p24.1 06p24.1 2013-10-18 2013-10-18 106480262 ENSG00000218893 OTTHUMG00000014267 NG_043963 PGOHUM00000243488 +HGNC:49351 SUMO2P13 SUMO2 pseudogene 13 pseudogene pseudogene Approved 6p22.3 06p22.3 2013-10-18 2014-02-12 106480263 ENSG00000218359 OTTHUMG00000014310 NG_043969 PGOHUM00000243496 +HGNC:49352 SUMO2P14 SUMO2 pseudogene 14 pseudogene pseudogene Approved 7p15.3 07p15.3 2013-10-18 2013-10-18 106480264 ENSG00000271096 OTTHUMG00000184657 NG_045115 PGOHUM00000232619 +HGNC:49353 SUMO2P15 SUMO2 pseudogene 15 pseudogene pseudogene Approved 15q15.1 15q15.1 2013-10-18 2013-10-18 106480417 ENSG00000271236 OTTHUMG00000184878 NG_043176 PGOHUM00000247095 +HGNC:49354 SUMO2P16 SUMO2 pseudogene 16 pseudogene pseudogene Approved 8p12 08p12 2013-10-18 2013-10-18 106480679 ENSG00000253579 OTTHUMG00000163895 NG_043233 PGOHUM00000249287 +HGNC:49358 SUMO2P17 SUMO2 pseudogene 17 pseudogene pseudogene Approved 17q21.32 17q21.32 2013-10-18 2013-10-18 100128010 ENSG00000248278 OTTHUMG00000160509 NG_030097 PGOHUM00000237102 +HGNC:49356 SUMO2P18 SUMO2 pseudogene 18 pseudogene pseudogene Approved 8q22.1 08q22.1 2013-10-18 2013-10-18 106481679 ENSG00000253639 OTTHUMG00000164741 NG_043028 PGOHUM00000249444 +HGNC:49357 SUMO2P19 SUMO2 pseudogene 19 pseudogene pseudogene Approved 8q22.3 08q22.3 2013-10-18 2013-10-18 100422265 ENSG00000253328 OTTHUMG00000164794 NG_026064 PGOHUM00000249464 +HGNC:49355 SUMO2P20 SUMO2 pseudogene 20 pseudogene pseudogene Approved 8q13.3 08q13.3 2013-10-18 2013-10-18 2014-02-12 101927327 ENSG00000253721 OTTHUMG00000164433 PGOHUM00000249379 +HGNC:11124 SUMO3 small ubiquitin-like modifier 3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 SMT3A SMT3H1 "SMT3 (suppressor of mif two 3, yeast) homolog 1|SMT3 suppressor of mif two 3 homolog 3 (yeast)|SMT3 suppressor of mif two 3 homolog 3 (S. cerevisiae)" 1997-01-29 2004-05-19 2013-06-05 2015-09-09 6612 ENSG00000184900 OTTHUMG00000090256 uc002zfz.1 NM_006936 "CCDS33587|CCDS68220" P55854 9119407 MGI:1336201 RGD:1561022 SUMO3 602231 +HGNC:21181 SUMO4 small ubiquitin-like modifier 4 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 dJ281H8.4 "SMT3H4|IDDM5" "SMT3 suppressor of mif two 3 homolog 4 (yeast)|SMT3 suppressor of mif two 3 homolog 4 (S. cerevisiae)|insulin-dependent diabetes mellitus 5" 2003-11-27 2004-05-19 2013-06-05 2015-09-09 387082 ENSG00000177688 OTTHUMG00000015785 uc003qml.4 NM_001002255 CCDS34549 Q6EEV6 15123604 RGD:1595256 SUMO4 608829 +HGNC:18587 SUN1 Sad1 and UNC84 domain containing 1 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "KIAA0810|FLJ12407" Sad1 unc-84 domain protein 1 UNC84A unc-84 homolog A (C. elegans) 2002-09-13 2010-01-27 2010-01-27 2014-11-18 23353 ENSG00000164828 OTTHUMG00000151426 uc003sjf.4 AF202724 NM_025154 "CCDS43533|CCDS47525|CCDS55078|CCDS55079|CCDS55080" O94901 11593002 MGI:1924303 RGD:1359142 SUN1 607723 +HGNC:14210 SUN2 Sad1 and UNC84 domain containing 2 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 UNC84B unc-84 homolog B (C. elegans) 2002-09-13 2010-01-27 2010-05-18 2015-01-28 25777 ENSG00000100242 OTTHUMG00000151031 uc010gxr.3 AF202723 XM_039332 "CCDS13978|CCDS56231" Q9UH99 "10508607|10375507" MGI:2443011 RGD:1563141 SUN2 613569 +HGNC:22429 SUN3 Sad1 and UNC84 domain containing 3 protein-coding gene gene with protein product Approved 7p12.3 07p12.3 MGC33329 SUNC1 Sad1 and UNC84 domain containing 1 2004-08-27 2010-01-27 2010-01-27 2015-08-26 256979 ENSG00000164744 OTTHUMG00000155646 uc064dof.1 AF429967 NM_152782 "CCDS34636|CCDS64647" Q8TAQ9 MGI:3041199 RGD:1591975 SUN3 +HGNC:16252 SUN5 Sad1 and UNC84 domain containing 5 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "dJ726C3.1|TSARG4" testis and spermatogenesis related gene 4 SPAG4L sperm associated antigen 4-like 2001-07-17 2010-01-27 2010-01-27 2014-11-19 140732 ENSG00000167098 OTTHUMG00000032239 uc002wyi.4 AL121756 NM_080675 CCDS13209 Q8TC36 "9691178|10373309" MGI:1923657 RGD:1306357 SUN5 613942 +HGNC:11460 SUOX sulfite oxidase protein-coding gene gene with protein product Approved 12q13.2 12q13.2 1997-03-21 2016-10-05 6821 ENSG00000139531 OTTHUMG00000128503 uc001siz.4 BC065193 NM_000456 CCDS8901 P51687 7599189 MGI:2446117 RGD:619994 SUOX 606887 119902 1.8.3.1 +HGNC:11466 SUPT3H SPT3 homolog, SAGA and STAGA complex component protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "SPT3|SPT3L" "suppressor of Ty (S.cerevisiae) 3 homolog|suppressor of Ty 3 homolog (S. cerevisiae)" SAGA complex 1059 1998-10-09 2015-09-24 2016-10-05 8464 ENSG00000196284 OTTHUMG00000014773 uc003oxp.5 AF069734 NM_181356 "CCDS34465|CCDS34466|CCDS75464" O75486 "9674425|9726987" MGI:1923723 RGD:1591316 SUPT3H 602947 +HGNC:11467 SUPT4H1 SPT4 homolog, DSIF elongation factor subunit protein-coding gene gene with protein product Approved 17q22 17q22 "SPT4H|Spt4|Supt4a" SUPT4H "suppressor of Ty (S.cerevisiae) 4 homolog 1|suppressor of Ty 4 homolog 1 (S. cerevisiae)" 1995-11-30 2015-09-25 2015-09-25 6827 ENSG00000213246 OTTHUMG00000178926 uc002iwe.3 U38817 NM_003168 CCDS11606 P63272 "8786137|10075709" MGI:107416 RGD:1306372 SUPT4H1 603555 +HGNC:33981 SUPT4H1P1 SPT4 homolog, DSIF elongation factor subunit pseudogene pseudogene pseudogene Approved 2p12 02p12 SUPT4H1P SUPT4H1 pseudogene 2008-01-31 2015-09-25 2015-09-25 2015-09-25 100190947 ENSG00000226247 OTTHUMG00000152940 NG_008701 PGOHUM00000297921 +HGNC:50823 SUPT4H1P2 SPT4 homolog, DSIF elongation factor subunit pseudogene 2 pseudogene pseudogene Approved 12p13.31 12p13.31 2015-09-25 2015-09-25 2015-09-25 100287625 ENSG00000246115 OTTHUMG00000168673 NG_030121 PGOHUM00000239323 +HGNC:11469 SUPT5H SPT5 homolog, DSIF elongation factor subunit protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "SPT5H|SPT5|FLJ34157" "suppressor of Ty (S.cerevisiae) 5 homolog|suppressor of Ty 5 homolog (S. cerevisiae)" 1995-12-04 2015-09-25 2015-09-25 6829 ENSG00000196235 OTTHUMG00000182973 uc002olo.5 U56402 NM_003169 "CCDS12536|CCDS46072" O00267 "8975720|10075709" MGI:1202400 RGD:1563807 SUPT5H 602102 +HGNC:11470 SUPT6H SPT6 homolog, histone chaperone protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "KIAA0162|SPT6H" "suppressor of Ty (S.cerevisiae) 6 homolog|suppressor of Ty 6 homolog (S. cerevisiae)" SH2 domain containing 741 1995-12-04 2015-09-25 2015-09-25 6830 ENSG00000109111 OTTHUMG00000179449 uc002hby.4 U38658 NM_003170 CCDS32596 Q7KZ85 "8786132|23503590" MGI:107726 RGD:1309290 SUPT6H 601333 +HGNC:30632 SUPT7L SPT7-like STAGA complex gamma subunit protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "STAF65gamma|KIAA0764|SPT7L|STAF65" suppressor of Ty 7 (S. cerevisiae)-like SAGA complex 1059 2005-06-24 2015-09-25 2015-09-25 9913 ENSG00000119760 OTTHUMG00000151947 uc002rli.3 AF197954 NM_014860 "CCDS42667|CCDS62885|CCDS62886" O94864 "11564863|24852358" MGI:1919445 RGD:1562206 SUPT7L 612762 +HGNC:11465 SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "FACT|FACTP140|SPT16/CDC68|FLJ14010|FLJ10857|CDC68" facilitates chromatin remodeling 140 kDa subunit "suppressor of Ty (S.cerevisiae) 16 homolog|suppressor of Ty 16 homolog (S. cerevisiae)" 1996-08-21 2015-09-25 2016-10-05 11198 ENSG00000092201 OTTHUMG00000029685 uc001wao.2 AF152961 NM_007192 CCDS9569 Q9Y5B9 "9489704|11239457" MGI:1890948 RGD:1310032 SUPT16H 605012 M24.974 +HGNC:31388 SUPT16HP1 SPT16 homolog, facilitates chromatin remodeling subunit pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 bcm670 SUPT16HP "suppressor of Ty 16 homolog (S. cerevisiae) pseudogene|suppressor of Ty 16 homolog (S. cerevisiae) pseudogene 1" 2008-01-31 2013-10-18 2015-09-25 2015-09-25 400011 ENSG00000256238 OTTHUMG00000168818 XR_016968 PGOHUM00000291253 +HGNC:20596 SUPT20H SPT20 homolog, SAGA complex component protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "SPT20|bA421P11.4|P38IP" "p38 interacting protein|transcription factor (p38 interacting protein)" "C13orf19|FAM48A" "chromosome 13 open reading frame 19|family with sequence similarity 48, member A|suppressor of Ty 20 homolog (S. cerevisiae)" SAGA complex 1059 2004-04-16 2012-11-29 2015-09-25 2016-10-05 55578 ENSG00000102710 OTTHUMG00000016747 uc001uwj.4 AF093250 NM_017569 "CCDS9362|CCDS31959|CCDS61311" Q8NEM7 "12070015|16685401|19114550" MGI:1929651 RGD:1307812 613417 +HGNC:30773 SUPT20HL1 SPT20 homolog, SAGA complex component-like 1 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 SPT20L similar to transcription factor (p38 interacting protein) FAM48B1 "family with sequence similarity 48, member B1|suppressor of Ty 20 homolog (S. cerevisiae)-like 1" 2004-08-11 2012-11-29 2015-09-25 2015-09-25 100130302 ENSG00000223731 OTTHUMG00000021267 AY736017 NM_001136234 Q3ZLR7 19114550 PGOHUM00000241666 +HGNC:31797 SUPT20HL2 SPT20 homolog, SAGA complex component-like 2 other unknown Approved Xp22.11 Xp22.11 FAM48B2 "family with sequence similarity 48, member B2|suppressor of Ty 20 homolog (S. cerevisiae)-like 2" 2004-08-11 2012-11-29 2015-09-25 2015-09-25 170067 ENSG00000223611 OTTHUMG00000021265 NM_001136233 P0C7V6 RGD:1565951 PGOHUM00000241211 +HGNC:11471 SUPV3L1 Suv3 like RNA helicase protein-coding gene gene with protein product Approved 10q22.1 10q22.1 SUV3 "suppressor of var1 (S.cerevisiae) 3-like 1|suppressor of var1, 3-like 1 (S. cerevisiae)" RNA helicases 1168 1998-02-20 2016-01-08 2016-01-08 6832 ENSG00000156502 OTTHUMG00000018375 uc001jpe.2 AF042169 NM_003171 CCDS7287 Q8IYB8 "9925937|16176273|25446650" MGI:2441711 RGD:1305565 SUPV3L1 605122 +HGNC:11474 SURF1 SURF1, cytochrome c oxidase assembly factor protein-coding gene gene with protein product Approved 9q34.2 09q34.2 surfeit locus protein 1 surfeit 1 Mitochondrial respiratory chain complex assembly factors 645 1989-11-29 2016-08-23 2016-10-05 6834 ENSG00000148290 OTTHUMG00000020866 uc004cdh.3 NM_003172 "CCDS6966|CCDS75928" Q15526 "8499913|9843204" MGI:98443 RGD:6489329 SURF1 185620 119904 +HGNC:11475 SURF2 surfeit 2 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 surfeit locus protein 2 1989-11-29 2016-10-05 6835 ENSG00000148291 OTTHUMG00000020867 uc004cdi.4 NM_017503 CCDS6967 Q15527 MGI:98444 RGD:1565817 SURF2 185630 +HGNC:11476 SURF4 surfeit 4 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "ERV29|FLJ22993|MGC102753" "surfeit locus protein 4|surface 4 integral membrane protein" 1989-11-29 2016-10-05 6836 ENSG00000148248 OTTHUMG00000020868 uc004cdj.5 NM_033161 "CCDS6968|CCDS65177|CCDS65178|CCDS75929" O15260 "8499913|7540914" MGI:98445 RGD:1561980 SURF4 185660 +HGNC:11478 SURF6 surfeit 6 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "FLJ30322|RRP14" surfeit locus protein 6 1998-03-20 2016-10-05 6838 ENSG00000148296 OTTHUMG00000020871 uc004cdb.6 AF186772 NM_006753 CCDS6962 O75683 "9740673|15629442|21063453" MGI:98447 RGD:1307382 SURF6 185642 +HGNC:37722 SURF6P1 surfeit 6 pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-02-05 2016-10-05 643470 ENSG00000228518 OTTHUMG00000036417 NG_016547 PGOHUM00000233969 +HGNC:25413 SUSD1 sushi domain containing 1 protein-coding gene gene with protein product Approved 9q31.3-q32 09q31.3-q32 DKFZP761E1824 Sushi domain containing 1179 2004-01-27 2016-10-11 64420 ENSG00000106868 OTTHUMG00000020499 uc004bfu.5 AL137432 NM_022486 "CCDS6783|CCDS65105|CCDS65106" Q6UWL2 12975309 MGI:3651543 RGD:1306966 SUSD1 +HGNC:30667 SUSD2 sushi domain containing 2 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "BK65A6.2|FLJ22778" Sushi domain containing 1179 2004-01-27 2016-10-05 56241 ENSG00000099994 OTTHUMG00000150792 uc002zzn.2 AK026431 NM_019601 CCDS13824 Q9UGT4 12477932 MGI:1918983 RGD:1308595 SUSD2 615825 +HGNC:33889 SUSD2P1 sushi domain containing 2 pseudogene 1 pseudogene pseudogene Approved 22q11.21 22q11.21 2007-11-21 2008-10-22 729568 NG_008830 +HGNC:35197 SUSD2P2 sushi domain containing 2 pseudogene 2 pseudogene pseudogene Approved 22q11.21 22q11.21 2008-10-22 2014-11-19 729450 XR_015550 +HGNC:28391 SUSD3 sushi domain containing 3 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 MGC26847 Sushi domain containing 1179 2004-01-29 2016-10-05 203328 ENSG00000157303 OTTHUMG00000020241 uc033dbq.2 AK128289 NM_145006 "CCDS6701|CCDS69620|CCDS75857" Q96L08 12975309 MGI:1913579 RGD:1310933 SUSD3 616429 +HGNC:25470 SUSD4 sushi domain containing 4 protein-coding gene gene with protein product Approved 1q41 01q41 FLJ10052 Sushi domain containing 1179 2005-04-22 2015-08-26 55061 ENSG00000143502 OTTHUMG00000037936 uc001hny.5 AK096265 NM_017982 "CCDS31034|CCDS41471" Q5VX71 12477932 MGI:2138351 RGD:1564043 SUSD4 615827 +HGNC:29061 SUSD5 sushi domain containing 5 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 KIAA0527 Sushi domain containing 1179 2006-01-13 2006-01-13 2016-10-05 26032 ENSG00000173705 OTTHUMG00000155829 uc003cfo.2 AB011099 XM_171054 CCDS46787 O60279 MGI:2685972 RGD:1561132 SUSD5 +HGNC:19956 SUSD6 sushi domain containing 6 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 KIAA0247 KIAA0247 Sushi domain containing 1179 2003-11-21 2014-12-08 2014-12-08 2014-12-08 9766 ENSG00000100647 OTTHUMG00000171234 D87434 NM_014734 CCDS9796 Q92537 9039502 MGI:2444661 RGD:1595528 616761 +HGNC:11479 SUV39H1 suppressor of variegation 3-9 homolog 1 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 KMT1A SUV39H "suppressor of variegation 3-9 (Drosophila) homolog 1|suppressor of variegation 3-9 homolog 1 (Drosophila)" Lysine methyltransferases 487 1996-04-12 2015-12-04 2015-12-04 6839 ENSG00000101945 OTTHUMG00000022701 uc004dkn.5 AF019968 NM_003173 "CCDS14304|CCDS65252" O43463 10202156 MGI:1099440 RGD:1565692 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SUV39H1 SUV39H1 300254 objectId:2715 +HGNC:17287 SUV39H2 suppressor of variegation 3-9 homolog 2 protein-coding gene gene with protein product Approved 10p13 10p13 "FLJ23414|KMT1B" suppressor of variegation 3-9 homolog 2 (Drosophila) Lysine methyltransferases 487 2003-11-11 2015-12-04 2015-12-04 79723 ENSG00000152455 OTTHUMG00000017718 uc021png.2 AK027067 NM_024670 "CCDS7104|CCDS53493|CCDS53494" Q9H5I1 11094092 MGI:1890396 RGD:1306969 SUV39H2 606503 objectId:2716 +HGNC:17101 SUZ12 SUZ12 polycomb repressive complex 2 subunit protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "JJAZ1|KIAA0160|CHET9" suppressor of zeste 12 homolog (Drosophila) Zinc fingers C2H2-type 28 2004-12-14 2013-06-05 2016-10-05 23512 ENSG00000178691 OTTHUMG00000132813 uc002hgs.3 D63881 NM_015355 "CCDS11270|CCDS82101" Q15022 "8590280|11371647|18784248" MGI:1261758 RGD:1593621 SUZ12 606245 431087 +HGNC:32421 SUZ12P1 SUZ12 polycomb repressive complex 2 subunit pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 SUZ12P "suppressor of zeste 12 homolog pseudogene|suppressor of zeste 12 homolog pseudogene 1" 2005-12-15 2012-04-04 2015-06-26 2015-06-26 440423 ENSG00000264538 OTTHUMG00000178989 BC047718 NG_005675 17999360 PGOHUM00000237350 +HGNC:43872 SUZ12P2 SUZ12 polycomb repressive complex 2 subunit pseudogene 2 pseudogene pseudogene Approved 14q11.2 14q11.2 suppressor of zeste 12 homolog pseudogene 2 2012-04-04 2015-06-26 2015-06-26 100421539 NG_027340 PGOHUM00000248111 +HGNC:20566 SV2A synaptic vesicle glycoprotein 2A protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "SV2|KIAA0736" 2003-02-24 2014-11-19 9900 ENSG00000159164 OTTHUMG00000012209 uc001etg.4 AB018279 XM_017002992 CCDS940 Q7L0J3 "7681585|10611374" MGI:1927139 RGD:619715 SV2A 185860 objectId:2634 +HGNC:16874 SV2B synaptic vesicle glycoprotein 2B protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "KIAA0735|HsT19680" 2003-02-24 2014-11-19 9899 ENSG00000185518 OTTHUMG00000149833 uc059nkh.1 AB018278 NM_014848 "CCDS10370|CCDS53972" Q7L1I2 "9872452|7681585" MGI:1927338 RGD:619716 SV2B 185861 +HGNC:30670 SV2C synaptic vesicle glycoprotein 2C protein-coding gene gene with protein product Approved 5q13.3 05q13.3 2004-04-01 2016-10-05 22987 ENSG00000122012 OTTHUMG00000162384 uc003kei.2 AB028977 XM_011543282 "CCDS43331|CCDS75261" Q496J9 "10470851|9801366" MGI:1922459 RGD:619718 SV2C 610291 +HGNC:29204 SVBP small vasohibin binding protein protein-coding gene gene with protein product Approved 1p34.2 01p34.2 MGC45441 CCDC23 coiled-coil domain containing 23 2005-07-26 2015-06-15 2015-06-15 2015-06-15 374969 ENSG00000177868 OTTHUMG00000007566 "AL512353|CAH72714" NM_199342 CCDS474 Q8N300 20736312 MGI:1916466 RGD:1311232 +HGNC:15985 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "bA427L11.3|POLYDOM|FLJ13529" C9orf13 chromosome 9 open reading frame 13 Sushi domain containing 1179 2001-07-04 2005-03-17 2005-03-15 2016-10-05 79987 ENSG00000165124 OTTHUMG00000020482 uc010mtz.4 AK027870 NM_153366 CCDS48004 Q4LDE5 MGI:1928849 RGD:1588987 SVEP1 611691 +HGNC:11480 SVIL supervillin protein-coding gene gene with protein product Approved 10p11.23 10p11.23 archvillin Gelsolin/villins 950 1998-05-07 2016-10-05 6840 ENSG00000197321 OTTHUMG00000017882 uc001iut.2 AF051851 NM_001323600 "CCDS7163|CCDS7164" O95425 9382871 MGI:2147319 RGD:1306354 SVIL 604126 +HGNC:51219 SVIL-AS1 SVIL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p11.23 10p11.23 2014-08-07 2014-08-07 102724316 ENSG00000224597 OTTHUMG00000017881 NR_110920 +HGNC:44959 SVILP1 supervillin pseudogene 1 pseudogene pseudogene Approved 10p11.23 10p11.23 2012-12-20 2012-12-20 645954 ENSG00000234814 OTTHUMG00000017900 NR_036438 PGOHUM00000261092 +HGNC:25238 SVIP small VCP interacting protein protein-coding gene gene with protein product Approved 11p14.3 11p14.3 DKFZp313A2432 small VCP/p97-interacting protein 2009-03-10 2016-06-21 2016-06-21 258010 ENSG00000198168 OTTHUMG00000166072 uc001mqp.5 AF527534 NM_148893 CCDS41627 Q8NHG7 "18793143|17872946|12529442" MGI:1922994 RGD:1565432 SVIP +HGNC:25417 SVOP SV2 related protein protein-coding gene gene with protein product Approved 12q24.11 12q24.11 DKFZp761H039 SV2 related protein homolog (rat) 2006-01-04 2015-06-23 2015-07-22 55530 ENSG00000166111 OTTHUMG00000169432 uc031zmo.2 BC033587 NM_018711 CCDS73520 Q8N4V2 "9801366|19390693|21953179" MGI:1915916 RGD:620277 SVOP 611699 +HGNC:27034 SVOPL SVOP like protein-coding gene gene with protein product Approved 7q34 07q34 MGC46715 "SV2 related protein homolog (rat)-like|SVOP-like" 2007-01-24 2016-03-15 2016-10-12 136306 ENSG00000157703 OTTHUMG00000155870 uc011kqh.3 BC036796 NM_174959 "CCDS5848|CCDS47721" Q8N434 MGI:2444335 RGD:1566053 LRG_1103|http://www.lrg-sequence.org/LRG/LRG_1103 SVOPL 611700 +HGNC:17070 SWAP70 SWAP switching B-cell complex 70kDa subunit protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "KIAA0640|SWAP-70" switch-associated protein 70 "Pleckstrin homology domain containing|EF-hand domain containing|Minor histocompatibility antigens" "682|863|870" 2009-05-20 2016-10-05 23075 ENSG00000133789 OTTHUMG00000165865 uc001mhw.4 AB014540 NM_015055 "CCDS31426|CCDS73257" Q9UH65 "9734811|10681448" MGI:1298390 RGD:1305579 SWAP70 604762 +HGNC:31412 SWI5 SWI5 homologous recombination repair protein protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "bA395P17.9|SAE3" C9orf119 "chromosome 9 open reading frame 119|SWI5 recombination repair homolog (yeast)" 2004-04-14 2011-07-29 2015-06-30 2016-10-05 375757 ENSG00000175854 OTTHUMG00000020729 uc004bup.4 BC029911 NM_001040011 "CCDS43883|CCDS83422" Q1ZZU3 "20976249|21252223" MGI:1920181 RGD:1559966 616528 +HGNC:26638 SWSAP1 SWIM-type zinc finger 7 associated protein 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "FLJ35119|ZSWIM7AP1|SWS1AP1" "zinc finger, SWIM-type containing 7 associated protein 1|SWS1-associated protein 1" C19orf39 chromosome 19 open reading frame 39 2006-03-27 2011-11-24 2011-11-24 2014-11-19 126074 ENSG00000173928 OTTHUMG00000182025 uc002mrg.2 AK092438 NM_175871 CCDS12259 Q6NVH7 21965664 MGI:1914212 RGD:1308026 614536 +HGNC:16785 SWT1 SWT1, RNA endoribonuclease homolog protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "FLJ20121|HsSwt1" C1orf26 "chromosome 1 open reading frame 26|SWT1 RNA endoribonuclease homolog (S. cerevisiae)" 2001-10-08 2011-01-24 2015-12-01 2016-10-05 54823 ENSG00000116668 OTTHUMG00000035390 uc001grh.5 AF288392 NM_017673 CCDS1367 Q5T5J6 "11318611|19127978|23768067" MGI:1914125 RGD:1308695 SWT1 +HGNC:16273 SYAP1 synapse associated protein 1 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "FLJ14495|PRO3113" SAP47 homolog (Drosophila) 2001-07-24 2010-06-25 2016-10-05 94056 ENSG00000169895 OTTHUMG00000021192 uc004cxp.4 AF338728 NM_032796 CCDS14177 Q96A49 11483580 MGI:1914293 RGD:1303113 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SYAP1 SYAP1 +HGNC:26011 SYBU syntabulin protein-coding gene gene with protein product Approved 8q23.2 08q23.2 "FLJ20366|GOLSYN|KIAA1472|OCSYN|SNPHL" syntaphilin-like syntabulin (syntaxin-interacting) 2010-04-29 2015-11-09 2015-11-09 55638 ENSG00000147642 OTTHUMG00000165634 uc010mcv.4 AB040905 NM_017786 "CCDS43763|CCDS43764|CCDS47912|CCDS55271|CCDS83315" Q9NX95 "17611281|16750881|16157705|15656992|15459722" MGI:2442392 RGD:1564335 SYBU 611568 +HGNC:28852 SYCE1 synaptonemal complex central element protein 1 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "bA108K14.6|CT76" cancer/testis antigen 76 C10orf94 chromosome 10 open reading frame 94 2004-03-16 2005-09-27 2005-09-27 2014-11-19 93426 ENSG00000171772 OTTHUMG00000019321 uc057xak.1 AY027808 NM_201564 "CCDS7687|CCDS44500|CCDS44501" Q8N0S2 11829491 MGI:1921325 RGD:1559853 SYCE1 611486 413863 +HGNC:37236 SYCE1L synaptonemal complex central element protein 1 like protein-coding gene gene with protein product Approved 16q23.1 16q23.1 MRP2 meiosis-related protein synaptonemal complex central element protein 1-like 2009-10-06 2016-03-22 2016-03-22 100130958 ENSG00000205078 OTTHUMG00000176809 uc010vnh.2 NM_001129979 CCDS45533 A8MT33 16328886 MGI:1922247 RGD:2320134 SYCE1L +HGNC:27411 SYCE2 synaptonemal complex central element protein 2 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 CESC1 central element synaptonemal complex 1 2005-09-27 2015-07-22 256126 ENSG00000161860 OTTHUMG00000180562 uc002mvr.3 AK097443 XM_497609 CCDS42509 Q6PIF2 15944401 MGI:1919096 RGD:1311867 SYCE2 611487 +HGNC:35245 SYCE3 synaptonemal complex central element protein 3 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 testis highly expressed protein 2 C22orf41 chromosome 22 open reading frame 41 2008-10-30 2011-10-05 2011-10-05 2015-08-26 644186 ENSG00000217442 OTTHUMG00000150273 uc010hbe.4 NM_001123225 CCDS46733 A1L190 21637789 MGI:1922709 RGD:1586367 SYCE3 615775 +HGNC:18442 SYCN syncollin protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "SYL|FLJ27441" INSSA1 insulin synthesis associated 1 2005-03-22 2005-05-26 2015-07-22 342898 ENSG00000179751 OTTHUMG00000182803 uc002okr.3 BC039541 NM_001080468 CCDS46070 Q0VAF6 11839820 MGI:1915666 RGD:620862 SYCN +HGNC:11487 SYCP1 synaptonemal complex protein 1 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "HOM-TES-14|SCP1|CT8" cancer/testis antigen 8 1997-01-14 2016-10-05 6847 ENSG00000198765 OTTHUMG00000012057 uc001efr.5 D67035 NM_003176 "CCDS879|CCDS72840" Q15431 9560255 MGI:105931 RGD:3794 SYCP1 602162 +HGNC:11488 SYCP1L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:11489 SYCP1L3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-29 +HGNC:11490 SYCP2 synaptonemal complex protein 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 SCP2 1999-07-21 2014-11-19 10388 ENSG00000196074 OTTHUMG00000032872 uc002yaz.4 Y08982 NM_014258 CCDS13482 Q9BX26 "10341103|9592139" MGI:1933281 RGD:69429 SYCP2 604105 +HGNC:21537 SYCP2L synaptonemal complex protein 2 like protein-coding gene gene with protein product Approved 6p24.2 06p24.2 "dJ62D2.1|NO145" C6orf177 "chromosome 6 open reading frame 177|synaptonemal complex protein 2-like" 2003-11-26 2007-07-02 2015-11-23 2015-11-23 221711 ENSG00000153157 OTTHUMG00000014250 uc003mzo.4 AK128130 NM_194299 CCDS43423 Q5T4T6 MGI:2685114 RGD:1564922 SYCP2L 616799 +HGNC:18130 SYCP3 synaptonemal complex protein 3 protein-coding gene gene with protein product Approved 12q23.2 12q23.2 2002-02-05 2014-11-19 50511 ENSG00000139351 OTTHUMG00000150132 uc001tiq.4 "AF492003|AI075991" NM_153694 CCDS9087 Q8IZU3 "12213195|10854409" MGI:109542 RGD:3795 SYCP3 604759 448829 +HGNC:25824 SYDE1 synapse defective Rho GTPase homolog 1 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "7h3|FLJ13511|SYD1" synapse defective 1, Rho GTPase, homolog 1 (C. elegans) 2005-05-31 2016-04-29 2016-04-29 85360 ENSG00000105137 OTTHUMG00000183207 uc002nah.2 BC029926 NM_033025 "CCDS12324|CCDS74299" Q6ZW31 23791195 MGI:1918959 RGD:1305857 SYDE1 +HGNC:25841 SYDE2 synapse defective Rho GTPase homolog 2 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 FLJ13815 synapse defective 1, Rho GTPase, homolog 2 (C. elegans) C2 domain containing 823 2005-05-31 2005-08-09 2016-04-29 2016-04-29 84144 ENSG00000097096 OTTHUMG00000009956 uc009wcm.4 AL834286 XM_017002483 CCDS44169 Q5VT97 MGI:3036264 RGD:1564206 SYDE2 +HGNC:19824 SYF2 SYF2 pre-mRNA splicing factor protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "p29|DKFZp564O2082|NTC31|fSAP29" functional spliceosome-associated protein 29 CBPIN "CCNDBP1 interactor|SYF2 homolog, RNA splicing factor (S. cerevisiae)" 2005-05-06 2005-09-14 2016-03-11 2016-03-11 25949 ENSG00000117614 OTTHUMG00000043610 uc001bjt.2 AF273089 NM_015484 "CCDS258|CCDS259" O95926 11118353 MGI:1915842 RGD:621592 SYF2 607090 +HGNC:19925 SYF2P1 SYF2 pre-mRNA splicing factor pseudogene 1 pseudogene pseudogene Approved 14q12 14q12 "CBPINP|SYF2P" "CCNDBP1 interactor pseudogene|SYF2 homolog, RNA splicing factor (S. cerevisiae) pseudogene|SYF2 homolog, RNA splicing factor (S. cerevisiae) pseudogene 1" 2003-01-13 2010-04-20 2016-03-11 2016-03-11 317778 ENSG00000258350 OTTHUMG00000170511 AL117355 NG_002474 PGOHUM00000292308 +HGNC:38139 SYF2P2 SYF2 pre-mRNA splicing factor pseudogene 2 pseudogene pseudogene Approved 9p13.3 09p13.3 SYF2 homolog, RNA splicing factor (S. cerevisiae) pseudogene 2 2010-04-20 2016-03-11 2016-10-05 100128275 ENSG00000233148 OTTHUMG00000019845 NG_021644 PGOHUM00000236447 +HGNC:11491 SYK spleen associated tyrosine kinase protein-coding gene gene with protein product Approved 9q22.2 09q22.2 spleen tyrosine kinase SH2 domain containing 741 1994-12-13 2016-06-15 2016-10-05 6850 ENSG00000165025 OTTHUMG00000020200 uc004aqz.4 L28824 XM_005252147 "CCDS6688|CCDS47992" P43405 "8082894|1423621" MGI:99515 RGD:3796 SYK 600085 objectId:2230 +HGNC:11493 SYM2 symphalangism 2 (distal) phenotype phenotype only Approved reserved reserved 1995-03-24 2011-02-24 6852 "3436086|2061594" +HGNC:22935 SYMPK symplekin protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "SYM|SPK" 2003-07-24 2016-10-05 8189 ENSG00000125755 OTTHUMG00000150151 uc002pdn.4 U49240 NM_004819 CCDS12676 Q92797 9330635 MGI:1915438 RGD:1306735 SYMPK 602388 +HGNC:11494 SYN1 synapsin I protein-coding gene gene with protein product Approved Xp11.3-p11.23 Xp11.3-p11.23 Synapsins 1325 2001-06-22 2016-10-11 6853 ENSG00000008056 OTTHUMG00000021454 uc004die.4 NM_006950 "CCDS14280|CCDS35233" P17600 MGI:98460 RGD:3797 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SYN1 SYN1 313440 119906 +HGNC:11495 SYN2 synapsin II protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "SYNII|SYNIIa|SYNIIb" Synapsins 1325 1990-01-15 2014-11-18 6854 ENSG00000157152 OTTHUMG00000155335 uc032rek.2 NM_133625 "CCDS74900|CCDS74901" Q92777 8530057 MGI:103020 RGD:3798 SYN2 600755 +HGNC:11496 SYN3 synapsin III protein-coding gene gene with protein product Approved 22q12.3 22q12.3 Synapsins 1325 1998-10-14 2015-09-09 8224 ENSG00000185666 OTTHUMG00000031004 uc003amx.4 AF046873 XM_011530406 CCDS13908 O14994 9539796 MGI:1351334 RGD:3799 SYN3 602705 +HGNC:28897 SYNC syncoilin, intermediate filament protein protein-coding gene gene with protein product Approved 1p35.1 01p35.1 SYNCOILIN SYNC1 syncoilin, intermediate filament 1 Intermediate filaments Type III 610 2005-02-09 2008-09-19 2008-09-19 2014-11-19 81493 ENSG00000162520 OTTHUMG00000008087 uc001bvt.3 AK024707 NM_030786 "CCDS367|CCDS53294" Q9H7C4 11053421 MGI:1916078 RGD:1307970 SYNC 611750 HGNC:28897 +HGNC:16918 SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein protein-coding gene gene with protein product Approved 6q14.3 06q14.3 "NSAP1|GRY-RBP|dJ3J17.2|HNRPQ1|hnRNP-Q|HNRNPQ" heterogeneous nuclear ribonucleoprotein Q RNA binding motif containing 725 2003-11-27 2016-04-06 2016-10-05 10492 ENSG00000135316 OTTHUMG00000015141 uc003pla.3 AF037448 NM_006372 "CCDS5005|CCDS55041|CCDS75491" O60506 "9847309|11352648" MGI:1891690 RGD:1305683 SYNCRIP 616686 +HGNC:15885 SYNDIG1 synapse differentiation inducing 1 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "FLJ14220|IFITMD5|SynDIG1" "interferon induced transmembrane protein domain containing 5|synapse differentiation induced gene 1" "C20orf39|TMEM90B" "chromosome 20 open reading frame 39|transmembrane protein 90B" 2001-06-21 2011-06-30 2011-06-30 2015-08-26 79953 ENSG00000101463 OTTHUMG00000032104 uc002wtw.3 AK024282 NM_024893 CCDS13164 Q9H7V2 20152115 MGI:3702158 RGD:1310753 SYNDIG1 614311 +HGNC:32388 SYNDIG1L synapse differentiation inducing 1 like protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "capucin|IFITMD4" "caudate-and putamen-enriched sequence|interferon induced transmembrane protein domain containing 4" TMEM90A transmembrane protein 90A 2006-03-20 2011-06-30 2016-01-19 2016-01-19 646658 ENSG00000183379 OTTHUMG00000171210 uc001xpx.2 XM_938515 CCDS41970 A6NDD5 16359841 MGI:2685107 RGD:1589004 SYNDIG1L 609999 +HGNC:17089 SYNE1 spectrin repeat containing nuclear envelope protein 1 protein-coding gene gene with protein product Approved 6q25.2 06q25.2 "SYNE-1B|KIAA0796|8B|Nesprin-1|enaptin|MYNE1|CPG2|dJ45H2.2|SCAR8|ARCA1|Nesp1" "myocyte nuclear envelope protein 1|nuclear envelope spectrin repeat-1" C6orf98 "chromosome 6 open reading frame 98|spectrin repeat containing, nuclear envelope 1" Spectrin repeat containing nuclear envelope family 1252 2003-02-19 2016-04-29 2016-10-12 23345 ENSG00000131018 OTTHUMG00000015841 uc003qou.4 AB018339 NM_182961 "CCDS5235|CCDS5236" Q8NF91 "9872452|10878022" MGI:1927152 RGD:620546 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SYNE1|LRG_427|http://www.lrg-sequence.org/LRG/LRG_427" SYNE1 608441 159219 +HGNC:40793 SYNE1-AS1 SYNE1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q25.2 06q25.2 SYNE1 antisense RNA 1 (non-protein coding) 2012-05-31 2012-08-15 2014-11-19 100505475 ENSG00000234577 OTTHUMG00000015843 uc063sin.1 "CK821189|BI962584|BX107936" NR_120501 +HGNC:17084 SYNE2 spectrin repeat containing nuclear envelope protein 2 protein-coding gene gene with protein product Approved 14q23.2 14q23.2 "SYNE-2|DKFZP434H2235|Nesprin-2|NUANCE|NUA|KIAA1011|Nesp2" "nuclear envelope spectrin repeat-2|nucleus and actin connecting element" spectrin repeat containing, nuclear envelope 2 Spectrin repeat containing nuclear envelope family 1252 2003-02-19 2016-04-29 2016-10-12 23224 ENSG00000054654 OTTHUMG00000140349 uc001xgl.5 AB023228 NM_182914 "CCDS9761|CCDS41963|CCDS45124|CCDS45125" Q8WXH0 "10231032|10878022" MGI:2449316 RGD:1305248 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=SYNE2|LRG_872|http://www.lrg-sequence.org/LRG/LRG_872" SYNE2 608442 209271 +HGNC:19861 SYNE3 spectrin repeat containing nuclear envelope family member 3 protein-coding gene gene with protein product Approved 14q32.13 14q32.13 "FLJ25605|NET53|Nesprin-3|Nesp3" C14orf49 chromosome 14 open reading frame 49 Spectrin repeat containing nuclear envelope family 1252 2002-11-27 2012-05-31 2016-04-29 2016-04-29 161176 ENSG00000176438 OTTHUMG00000171632 uc001yei.4 AK098471 NM_152592 CCDS9935 Q6ZMZ3 MGI:2442408 RGD:1304563 SYNE3 610861 +HGNC:26703 SYNE4 spectrin repeat containing nuclear envelope family member 4 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "FLJ36445|Nesprin-4|Nesp4" "C19orf46|DFNB76" "chromosome 19 open reading frame 46|deafness, autosomal recessive 76" Spectrin repeat containing nuclear envelope family 1252 2006-07-12 2012-05-31 2016-04-29 2016-04-29 163183 ENSG00000181392 OTTHUMG00000048135 uc002ocq.2 BC038360 NM_001039876 "CCDS42553|CCDS77285" Q8N205 23348741 MGI:2141950 RGD:6489870 615535 328743 +HGNC:11497 SYNGAP1 synaptic Ras GTPase activating protein 1 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "SYNGAP|RASA5|KIAA1938" synaptic Ras GTPase activating protein 1 homolog (rat) C2 and RasGAP domain containing 830 1999-12-08 2010-06-25 2016-10-05 8831 ENSG00000197283 OTTHUMG00000031096 uc011dri.3 AB067525 XM_166407 CCDS34434 Q96PV0 "9581761|18323856" MGI:3039785 RGD:621090 SYNGAP1 603384 188809 +HGNC:11498 SYNGR1 synaptogyrin 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 1999-03-19 2016-10-05 9145 ENSG00000100321 OTTHUMG00000030978 uc003axq.5 AJ002303 NM_004711 "CCDS13989|CCDS13990|CCDS13991" O43759 "9760194|10595519" MGI:1328323 RGD:3801 SYNGR1 603925 +HGNC:11499 SYNGR2 synaptogyrin 2 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 cellugyrin 1999-03-19 2015-08-26 9144 ENSG00000108639 OTTHUMG00000177457 uc002juu.2 AJ002308 NM_001320523 CCDS11753 O43760 9760194 MGI:1328324 RGD:621334 SYNGR2 603926 +HGNC:11500 SYNGR2P1 synaptogyrin 2 pseudogene 1 pseudogene pseudogene Approved 15q13.2 15q13.2 SYNGR2P synaptogyrin 2 pseudogene 1999-03-19 2008-01-23 2008-01-23 2009-11-05 283698 AJ002313 NG_003218 9760194 +HGNC:33947 SYNGR2P2 synaptogyrin 2 pseudogene 2 pseudogene pseudogene Approved 9q21.2 09q21.2 2008-01-23 2008-01-23 138916 NG_001541 +HGNC:11501 SYNGR3 synaptogyrin 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 1999-03-19 2014-11-19 9143 ENSG00000127561 OTTHUMG00000128711 uc002cod.3 AJ002309 NM_004209 CCDS10456 O43761 9760194 MGI:1341881 RGD:1311801 SYNGR3 603927 +HGNC:11502 SYNGR4 synaptogyrin 4 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 1999-11-26 2016-10-05 23546 ENSG00000105467 OTTHUMG00000183214 uc002piz.4 AJ011733 XM_017026541 CCDS12717 O95473 MGI:1928903 RGD:1307737 SYNGR4 608373 +HGNC:11503 SYNJ1 synaptojanin 1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "INPP5G|PARK20" "phosphoinositide 5-phosphatase|synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1|inositol polyphosphate-5-phosphatase G" Phosphoinositide phosphatases 1079 1999-10-14 2016-10-05 8867 ENSG00000159082 OTTHUMG00000064926 uc002yqh.3 AF009040 NM_003895 "CCDS33539|CCDS33540|CCDS54483|CCDS54484" O43426 "9428629|10773674|24609975|14704270" MGI:1354961 RGD:69434 SYNJ1 604297 394615 objectId:1461 3.1.3.36 +HGNC:11504 SYNJ2 synaptojanin 2 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 INPP5H "synaptic inositol 1,4,5-trisphosphate 5-phosphatase 2|phosphoinositide 5-phosphatase|inositol polyphosphate-5-phosphatase H" Phosphoinositide phosphatases 1079 1999-10-14 2015-09-09 8871 ENSG00000078269 OTTHUMG00000015904 uc003qqx.3 AB002346 NM_003898 CCDS5254 O15056 23076136 MGI:1201671 RGD:69436 SYNJ2 609410 objectId:1462 3.1.3.36 +HGNC:41387 SYNJ2-IT1 SYNJ2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 6q25.3 06q25.3 SYNJ2 intronic transcript 1 (non-protein coding) 2011-05-31 2015-02-25 2015-02-25 100874300 ENSG00000233496 OTTHUMG00000015901 uc031sqq.1 NR_046796 +HGNC:18955 SYNJ2BP synaptojanin 2 binding protein protein-coding gene gene with protein product Approved 14q24.2 14q24.2 Arip2 activin receptor interacting protein 5 PDZ domain containing 1220 2002-07-19 2013-05-10 55333 ENSG00000213463 OTTHUMG00000171240 uc001xmc.5 AK002133 NM_018373 CCDS9803 P57105 11882656 MGI:1344347 RGD:69400 SYNJ2BP 609411 +HGNC:48350 SYNJ2BP-COX16 SYNJ2BP-COX16 readthrough other readthrough Approved 14q24.2 14q24.2 2013-09-30 2013-09-30 100529257 ENSG00000258644 OTTHUMG00000171239 NM_001202547 CCDS73648 +HGNC:24466 SYNM synemin protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "KIAA0353|SYN" "synemin alpha|synemin beta" DMN "desmuslin|synemin, intermediate filament protein" "A-kinase anchoring proteins|Intermediate filaments Type IV" "396|611" 2004-02-24 2008-09-19 2015-11-24 2016-10-12 23336 ENSG00000182253 OTTHUMG00000171887 uc032crv.2 AK026420 NM_145728 "CCDS73786|CCDS73787" O15061 "11737198|11454237" MGI:2661187 RGD:727872 LRG_415|http://www.lrg-sequence.org/LRG/LRG_415 SYNM 606087 HGNC:24466 +HGNC:30672 SYNPO synaptopodin protein-coding gene gene with protein product Approved 5q33.1 05q33.1 KIAA1029 2004-01-12 2015-08-26 11346 ENSG00000171992 OTTHUMG00000130078 uc003lsp.4 AF499137 NM_007286 "CCDS4308|CCDS54937|CCDS54938" Q8N3V7 "9314539|10470851" MGI:1099446 RGD:620668 SYNPO 608155 +HGNC:17732 SYNPO2 synaptopodin 2 protein-coding gene gene with protein product Approved 4q26 04q26 MYOPODIN PDZ domain containing 1220 2002-03-06 2008-08-29 171024 ENSG00000172403 OTTHUMG00000161165 uc010inb.3 AJ010482 NM_133477 "CCDS34054|CCDS47128|CCDS47129|CCDS75185|CCDS75186" Q9UMS6 "11673475|17828378" MGI:2153070 RGD:1564779 SYNPO2 +HGNC:23532 SYNPO2L synaptopodin 2 like protein-coding gene gene with protein product Approved 10q22.2 10q22.2 FLJ12921 synaptopodin 2-like PDZ domain containing 1220 2003-11-21 2016-02-01 2016-10-05 79933 ENSG00000166317 OTTHUMG00000018471 uc001jut.6 AK022983 NM_024875 "CCDS7331|CCDS44438" Q9H987 MGI:1916010 RGD:1565434 SYNPO2L +HGNC:16507 SYNPR synaptoporin protein-coding gene gene with protein product Approved 3p14.2 03p14.2 "MGC26651|SPO" 2001-09-10 2016-10-05 132204 ENSG00000163630 OTTHUMG00000158699 uc003dlp.4 AF411860 XM_017005731 "CCDS46859|CCDS46860" Q8TBG9 "8034131|12974474" MGI:1919253 RGD:708366 SYNPR +HGNC:40774 SYNPR-AS1 SYNPR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.2 03p14.2 SYNPR antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 100874016 ENSG00000241359 OTTHUMG00000158700 uc031sai.1 NR_046677 +HGNC:557 SYNRG synergin gamma protein-coding gene gene with protein product Approved 17q12 17q12 "SYNG|MGC104959" "gamma-synergin|adaptor-related protein complex 1 gamma subunit-binding protein 1" AP1GBP1 AP1 gamma subunit binding protein 1 2000-03-24 2009-07-20 2016-08-09 2016-08-09 11276 ENSG00000275066 OTTHUMG00000188473 uc032gic.3 AF169548 NM_007247 "CCDS11321|CCDS11322|CCDS54113|CCDS54114|CCDS59284|CCDS59285" Q9UMZ2 10477754 MGI:1354742 RGD:620684 SYNRG 607291 +HGNC:11506 SYP synaptophysin protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 MRX96 X-linked mental retardation 103 1990-01-15 2016-10-05 6855 ENSG00000102003 OTTHUMG00000034557 uc004dmz.2 X06389 NM_003179 CCDS14321 P08247 "3120152|19377476" MGI:98467 RGD:3802 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SYP SYP 313475 226044 +HGNC:40571 SYP-AS1 SYP antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp11.23 Xp11.23 SYP antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873921 ENSG00000237341 OTTHUMG00000024133 uc033edc.2 NR_046649 +HGNC:11507 SYPL1 synaptophysin like 1 protein-coding gene gene with protein product Approved 7q22.2 07q22.2 SYPL "synaptophysin-like protein|synaptophysin-like 1" 1994-04-28 2005-05-24 2016-03-15 2016-03-15 6856 ENSG00000008282 OTTHUMG00000157587 uc003vdp.5 NM_006754 "CCDS5736|CCDS47685" Q16563 MGI:108081 RGD:1359569 SYPL1 616665 +HGNC:27638 SYPL2 synaptophysin like 2 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 Mg29 mitsugumin-29 synaptophysin-like 2 2005-06-06 2016-03-15 2016-03-15 284612 ENSG00000143028 OTTHUMG00000010969 uc001dxp.4 AK131459 NM_001006603 CCDS41365 Q5VXT5 12975309 MGI:1328311 RGD:1309907 SYPL2 +HGNC:16162 SYS1 SYS1, golgi trafficking protein protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ453C12.4 C20orf169 "chromosome 20 open reading frame 169|SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)|Sys1 golgi trafficking protein" 2001-07-17 2006-11-06 2016-08-10 2016-08-10 90196 ENSG00000204070 OTTHUMG00000032579 uc002xnv.4 AL021578 NM_033542 "CCDS13351|CCDS56192" Q8N2H4 15077113 MGI:1913710 RGD:1583224 SYS1 612979 +HGNC:33535 SYS1-DBNDD2 SYS1-DBNDD2 readthrough (NMD candidate) other readthrough Approved 20q13.12 20q13.12 SYS1-DBNDD2 readthrough (non-protein coding) 2011-05-31 2013-05-09 2014-11-19 767557 ENSG00000254806 OTTHUMG00000166214 uc061xhp.1 BC023562 NR_003189 +HGNC:11509 SYT1 synaptotagmin 1 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 P65 "SYT|SVP65" synaptotagmin I Synaptotagmins 765 1990-03-14 2015-11-20 2015-11-20 6857 ENSG00000067715 OTTHUMG00000134326 uc001syt.4 NM_005639 "CCDS9017|CCDS76582" P21579 1840599 MGI:99667 RGD:3803 SYT1 185605 +HGNC:11510 SYT2 synaptotagmin 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 synaptotagmin II Synaptotagmins 765 1995-09-27 2015-11-20 2015-11-20 127833 ENSG00000143858 OTTHUMG00000041388 uc010pqb.3 AK090672 NM_177402 CCDS1427 Q8N9I0 7749232 MGI:99666 RGD:3804 SYT2 600104 444681 +HGNC:11511 SYT3 synaptotagmin 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 synaptotagmin III Synaptotagmins 765 1995-09-27 2015-11-20 2015-11-20 84258 ENSG00000213023 OTTHUMG00000183064 uc061brv.1 AL136594 NM_032298 CCDS12798 Q9BQG1 7749232 MGI:99665 RGD:3805 SYT3 600327 +HGNC:11512 SYT4 synaptotagmin 4 protein-coding gene gene with protein product Approved 18q12.3 18q12.3 "KIAA1342|HsT1192" synaptotagmin IV Synaptotagmins 765 1995-09-27 2015-11-20 2015-11-20 6860 ENSG00000132872 OTTHUMG00000132610 uc002law.4 BC036538 NM_020783 CCDS11922 Q9H2B2 8058779 MGI:101759 RGD:68397 SYT4 600103 +HGNC:11513 SYT5 synaptotagmin 5 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 synaptotagmin V Synaptotagmins 765 1995-09-27 2015-11-20 2015-11-20 6861 ENSG00000129990 OTTHUMG00000180669 uc002qjn.2 X96783 NM_003180 "CCDS12919|CCDS74455" O00445 9177789 MGI:1926368 RGD:3806 SYT5 600782 +HGNC:18638 SYT6 synaptotagmin 6 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 synaptotagmin VI Synaptotagmins 765 2002-05-14 2015-11-20 2016-10-05 148281 ENSG00000134207 OTTHUMG00000011755 uc057jph.1 NM_205848 CCDS871 Q5T7P8 11543631 MGI:1859544 RGD:62012 SYT6 607718 +HGNC:11514 SYT7 synaptotagmin 7 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "IPCA-7|SYT-VII|MGC150517" PCANAP7 "prostate cancer associated protein 7|synaptotagmin VII" Synaptotagmins 765 1999-07-14 2015-11-20 2015-11-20 9066 ENSG00000011347 OTTHUMG00000168199 uc001nrv.4 AF038535 NM_004200 "CCDS31577|CCDS58139|CCDS73298" O43581 9615227 MGI:1859545 RGD:62013 SYT7 604146 +HGNC:19264 SYT8 synaptotagmin 8 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 DKFZp434K0322 synaptotagmin VIII Synaptotagmins 765 2002-11-12 2015-11-20 2015-11-20 90019 ENSG00000149043 OTTHUMG00000009026 uc001lue.2 AL137708 XM_017018528 CCDS7726 Q8NBV8 7791877 MGI:1859867 RGD:68399 SYT8 607719 +HGNC:19265 SYT9 synaptotagmin 9 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 synaptotagmin IX Synaptotagmins 765 2004-10-20 2015-11-20 2015-11-20 143425 ENSG00000170743 OTTHUMG00000165499 uc001mfe.4 AK055003 NM_175733 CCDS7778 Q86SS6 11543631 MGI:1926373 RGD:621169 SYT9 613528 +HGNC:19266 SYT10 synaptotagmin 10 protein-coding gene gene with protein product Approved 12p11.1 12p11.1 synaptotagmin X Synaptotagmins 765 2004-01-12 2015-11-20 2016-10-05 341359 ENSG00000110975 OTTHUMG00000169269 uc001rll.2 AY198413 NM_198992 CCDS8732 Q6XYQ8 MGI:1859546 RGD:62041 SYT10 +HGNC:19239 SYT11 synaptotagmin 11 protein-coding gene gene with protein product Approved 1q22 01q22 "KIAA0080|MGC10881|MGC17226|DKFZp781D015" synaptotagmin XI Synaptotagmins 765 2002-09-20 2015-11-20 2015-11-20 23208 ENSG00000132718 OTTHUMG00000014105 uc001fmg.4 D38522 NM_152280 CCDS1122 Q9BT88 11543631 MGI:1859547 RGD:62042 SYT11 608741 +HGNC:18381 SYT12 synaptotagmin 12 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 SRG1 synaptotagmin XII Synaptotagmins 765 2002-03-17 2015-11-20 2015-11-20 91683 ENSG00000173227 OTTHUMG00000167101 uc058ech.1 AK024280 NM_177963 CCDS8154 Q8IV01 8987811 MGI:2159601 RGD:621876 SYT12 606436 +HGNC:14962 SYT13 synaptotagmin 13 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 KIAA1427 synaptotagmin XIII Synaptotagmins 765 2001-03-26 2015-11-20 2015-11-20 57586 ENSG00000019505 OTTHUMG00000166504 uc001myq.3 AB037848 NM_020826 CCDS31470 Q7L8C5 11171101 MGI:1933945 RGD:621877 SYT13 607716 +HGNC:23143 SYT14 synaptotagmin 14 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 "sytXIV|FLJ34198" synaptotagmin XIV Synaptotagmins 765 2003-09-17 2015-11-20 2015-11-20 255928 ENSG00000143469 OTTHUMG00000036652 uc009xcv.5 AK091517 NM_153262 "CCDS31014|CCDS53470|CCDS58058|CCDS53469" Q8NB59 MGI:2444490 RGD:1592654 SYT14 610949 284278 +HGNC:33429 SYT14P1 synaptotagmin 14 pseudogene 1 pseudogene pseudogene Approved 4q13.2 04q13.2 "SYTDEP|CHR415SYT" SYT14L "synaptotagmin XIV-like|synaptotagmin XIV pseudogene 1" 2007-03-29 2014-07-02 2015-11-20 2015-11-20 401135 ENSG00000215127 OTTHUMG00000157371 AJ303368 NM_001014372 Q58G82 16376304 610892 PGOHUM00000250714 +HGNC:17167 SYT15 synaptotagmin 15 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 CHR10SYT synaptotagmin XV Synaptotagmins 765 2003-06-05 2015-11-20 2016-10-05 83849 ENSG00000204176 OTTHUMG00000018103 uc001jea.4 AJ303363 NM_031912 "CCDS73103|CCDS73104" Q9BQS2 11543631 MGI:2442166 RGD:727964 SYT15 608081 +HGNC:23142 SYT16 synaptotagmin 16 protein-coding gene gene with protein product Approved 14q23.2 14q23.2 "yt14r|CHR14SYT|Strep14" "synaptotagmin XIV-related| chr14 synaptotagmin" SYT14L "synaptotagmin XIV-like|synaptotagmin XVI" Synaptotagmins 765 2003-09-18 2005-07-15 2015-11-20 2015-11-20 83851 ENSG00000139973 OTTHUMG00000171106 uc001xfu.2 BC040924 NM_031914 CCDS45121 Q17RD7 11543631 MGI:2673872 RGD:1564654 SYT16 610950 +HGNC:24119 SYT17 synaptotagmin 17 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 B/K protein synaptotagmin XVII Synaptotagmins 765 2005-07-15 2015-11-20 2015-11-20 51760 ENSG00000103528 OTTHUMG00000131461 uc002dfw.4 NM_016524 "CCDS10575|CCDS76835|CCDS81952" Q9BSW7 10493829 MGI:104966 RGD:708576 SYT17 +HGNC:15584 SYTL1 synaptotagmin like 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "SLP1|JFC1|FLJ14996|exophilin-7" synaptotagmin-like 1 Synaptotagmin like tandem C2 proteins 822 2004-05-10 2015-11-11 2016-10-05 84958 ENSG00000142765 OTTHUMG00000005770 uc001bnv.3 AK027902 NM_032872 "CCDS298|CCDS53286" Q8IYJ3 12137562 MGI:1933365 RGD:1310715 SYTL1 608042 +HGNC:15585 SYTL2 synaptotagmin like 2 protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "FLJ20163|FLJ21219|KIAA1597|exophilin-4|CHR11SYT|SLP2|SGA72M|MGC102768|PPP1R151" "chromosome 11 synaptotagmin|breast cancer-associated antigen SGA-72M|protein phosphatase 1, regulatory subunit 151" "Protein phosphatase 1 regulatory subunits|Synaptotagmin like tandem C2 proteins" "694|822" 2001-06-25 2015-11-18 2015-11-18 54843 ENSG00000137501 OTTHUMG00000166977 uc010rti.4 AJ303364 NM_206927 "CCDS31649|CCDS31652|CCDS41698|CCDS53687|CCDS53688|CCDS53689|CCDS76461" Q9HCH5 10997877 MGI:1933366 RGD:1307647 SYTL2 612880 +HGNC:15587 SYTL3 synaptotagmin like 3 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "SLP3|exophilin-6" Synaptotagmin like tandem C2 proteins 822 2001-07-31 2015-11-18 2015-11-18 94120 ENSG00000164674 OTTHUMG00000015916 uc003qrs.3 AK055750 XM_005267215 "CCDS34563|CCDS56458" Q4VX76 11773082 MGI:1933367 RGD:1561992 SYTL3 +HGNC:15588 SYTL4 synaptotagmin like 4 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "granuphilin-a|exophilin-2" Synaptotagmin like tandem C2 proteins 822 2001-07-31 2015-11-18 2016-10-05 94121 ENSG00000102362 OTTHUMG00000022004 uc010nnc.5 NM_080737 CCDS14472 Q96C24 MGI:1351606 RGD:620204 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SYTL4 SYTL4 300723 +HGNC:15589 SYTL5 synaptotagmin like 5 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 exophilin 9 synaptotagmin-like 5 Synaptotagmin like tandem C2 proteins 822 2001-07-31 2015-11-18 2016-10-05 94122 ENSG00000147041 OTTHUMG00000033176 uc004ddx.4 NM_138780 "CCDS14244|CCDS55399" Q8TDW5 MGI:2668451 RGD:631342 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=SYTL5 SYTL5 +HGNC:20738 SYVN1 synoviolin 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "HRD1|DER3" HMG-coA reductase degradation 1 homolog (S. cerevisiae) synovial apoptosis inhibitor 1, synoviolin Ring finger proteins 58 2004-07-28 2015-11-20 2016-06-21 84447 ENSG00000162298 OTTHUMG00000165607 uc001odc.3 AB085847 NM_032431 "CCDS8097|CCDS31605" Q86TM6 12975321 MGI:1921376 RGD:1310488 SYVN1 608046 +HGNC:30232 SZRD1 SUZ RNA binding domain containing 1 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 DKFZp566C0424 C1orf144 chromosome 1 open reading frame 144 2005-07-08 2012-07-23 2012-07-23 2014-11-19 26099 ENSG00000055070 OTTHUMG00000002217 uc001aym.6 BC010631 NM_015609 "CCDS44065|CCDS60000" Q7Z422 12761501 MGI:1098672 RGD:1560286 SZRD1 +HGNC:29040 SZT2 seizure threshold 2 homolog (mouse) protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "FLJ10387|SZT2B|RP11-506B15.1|FLJ34502|SZT2A" "seizure threshold 2 homolog A (mouse)|seizure threshold 2 homolog B (mouse)" "C1orf84|KIAA0467" "chromosome 1 open reading frame 84|KIAA0467" 2005-05-17 2011-06-10 2011-06-10 2016-04-25 23334 ENSG00000198198 OTTHUMG00000007423 uc001cjk.4 AB007936 NM_015284 CCDS30694 Q5T011 9455484 MGI:3033336 RGD:1308616 SZT2 615463 376495 +HGNC:41225 SZT2-AS1 SZT2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p34.2 01p34.2 SZT2 antisense RNA 1 (non-protein coding) 2011-06-10 2012-08-15 2014-11-19 100873952 ENSG00000229372 OTTHUMG00000007428 uc057fnr.1 +HGNC:11515 T T brachyury transcription factor protein-coding gene gene with protein product Approved 6q27 06q27 T, brachyury homolog (mouse) T-boxes 766 1996-04-12 2015-06-23 2015-06-23 6862 ENSG00000164458 OTTHUMG00000015991 uc003quu.4 AJ001699 NM_003181 "CCDS5290|CCDS59045" O15178 8963900 MGI:98472 RGD:1310141 T 601397 119908 +HGNC:17734 TAAR1 trace amine associated receptor 1 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "TAR1|TA1" TRAR1 trace amine receptor 1 Trace amine receptors 188 2004-04-02 2005-02-24 2005-02-23 2016-10-05 134864 ENSG00000146399 OTTHUMG00000015583 uc003qdm.1 AY180374 NM_138327 CCDS5158 Q96RJ0 "11459929|15718104" MGI:2148258 RGD:621621 TAAR1 609333 objectId:364 +HGNC:4514 TAAR2 trace amine associated receptor 2 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 GPR58 G protein-coupled receptor 58 Trace amine receptors 188 1999-03-09 2005-02-24 2005-02-23 2016-10-05 9287 ENSG00000146378 OTTHUMG00000015585 uc010kfr.2 AF112460 NM_014626 "CCDS34541|CCDS5157" Q9P1P5 "10684976|15718104" MGI:2685071 RGD:1311240 TAAR2 604849 objectId:167 +HGNC:4513 TAAR3 trace amine associated receptor 3 (gene/pseudogene) protein-coding gene gene with protein product Approved 6q23.2 06q23.2 GPR57 "G protein-coupled receptor 57|trace amine associated receptor 3" Trace amine receptors 188 1999-03-09 2005-02-24 2008-04-16 2016-10-05 9288 ENSG00000179073 OTTHUMG00000015584 AF112461 NR_028511 Q9P1P4 "10684976|14559210|15718104|15891052|19325074" MGI:3527427 RGD:1359566 objectId:168 +HGNC:31924 TAAR4P trace amine associated receptor 4, pseudogene pseudogene pseudogene Approved 6q23.2 06q23.2 Trace amine receptors 188 2005-02-23 2009-12-08 2012-08-08 503612 ENSG00000237449 OTTHUMG00000015582 U88828 NG_004855.2 15718104 MGI:2685072 objectId:169 +HGNC:30236 TAAR5 trace amine associated receptor 5 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 PNR Trace amine receptors 188 2005-02-23 2015-08-26 9038 ENSG00000135569 OTTHUMG00000015581 uc003qdk.3 AF021818 NM_003967 CCDS5156 O14804 "9464258|15718104" MGI:2685073 RGD:1359185 TAAR5 607405 objectId:170 +HGNC:20978 TAAR6 trace amine associated receptor 6 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 TA4 TRAR4 trace amine receptor 4 Trace amine receptors 188 2004-04-02 2005-02-24 2005-02-23 2016-10-05 319100 ENSG00000146383 OTTHUMG00000015579 uc011eck.2 AF380192 NM_175067 CCDS5155 Q96RI8 "11459929|15718104" MGI:2685074 RGD:631384 TAAR6 608923 objectId:171 +HGNC:31925 TAAR7P trace amine associated receptor 7, pseudogene pseudogene pseudogene Approved 6q23.2 06q23.2 Trace amine receptors 188 2005-02-23 2009-12-08 2012-08-08 503611 ENSG00000235998 OTTHUMG00000154716 AY803193 NG_004854.1 15718104 +HGNC:14964 TAAR8 trace amine associated receptor 8 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "TA5|TAR5" "GPR102|TRAR5" trace amine receptor 5 Trace amine receptors 188 2001-04-23 2005-02-24 2005-02-23 2014-11-19 83551 ENSG00000146385 OTTHUMG00000015586 uc011ecj.2 AF380193 NM_053278 CCDS5154 Q969N4 "11574155|15718104" "MGI:2685076|MGI:2685995|MGI:3527452" RGD:631391 TAAR8 606927 objectId:172 +HGNC:20977 TAAR9 trace amine associated receptor 9 (gene/pseudogene) protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "TA3|TAR3" TRAR3 "trace amine receptor 3|trace amine associated receptor 9" Trace amine receptors 188 2004-04-02 2005-02-24 2010-03-12 2015-08-26 134860 ENSG00000237110 OTTHUMG00000015578 uc032xme.2 AF380189 NM_175057 CCDS75520 Q96RI9 15718104 MGI:3527454 RGD:631383 608282 objectId:173 +HGNC:18157 TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "TAK1-binding protein 1|mitogen-activated protein kinase kinase kinase 7 interacting protein 1" MAP3K7IP1 "mitogen-activated protein kinase kinase kinase 7 interacting protein 1|TGF-beta activated kinase 1/MAP3K7 binding protein 1" 2002-02-22 2010-02-05 2016-07-20 2016-07-20 10454 ENSG00000100324 OTTHUMG00000151102 uc003axt.4 U49928 NM_153497 "CCDS13992|CCDS13993" Q15750 "8638164|10187861" MGI:1913763 RGD:1306216 TAB1 602615 +HGNC:17075 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 KIAA0733 MAP3K7IP2 mitogen-activated protein kinase kinase kinase 7 interacting protein 2 Zinc fingers RANBP2-type 89 2002-02-22 2010-02-05 2010-02-05 2015-08-26 23118 ENSG00000055208 OTTHUMG00000015783 uc063sdy.1 AF241230 XM_011535633 CCDS5214 Q9NYJ8 "9872452|10882101" MGI:1915902 RGD:1309527 TAB2 605101 +HGNC:30681 TAB3 TGF-beta activated kinase 1/MAP3K7 binding protein 3 protein-coding gene gene with protein product Approved Xp21.2 Xp21.2 TAK1 binding protein 3 MAP3K7IP3 mitogen-activated protein kinase kinase kinase 7 interacting protein 3 Zinc fingers RANBP2-type 89 2006-06-26 2010-02-05 2010-02-05 2014-11-19 257397 ENSG00000157625 OTTHUMG00000021329 uc004dck.3 AY331591 NM_152787 CCDS14226 Q8N5C8 "14633987|14670075" MGI:1913974 RGD:1594527 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=MAP3K7IP3 TAB3 300480 +HGNC:20176 TAB3-AS1 TAB3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp21.2 Xp21.2 OTTHUMG00000021331 CXorf29 "chromosome X open reading frame 29|TAB3 antisense RNA 1 (non-protein coding)" 2006-06-30 2011-04-28 2012-08-15 2014-11-19 727682 ENSG00000231542 OTTHUMG00000021331 uc064ylp.1 TAB3-AS1 +HGNC:40013 TAB3-AS2 TAB3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved Xp21.2 Xp21.2 TAB3 antisense RNA 2 (non-protein coding) 2011-04-28 2012-08-15 2014-11-19 100873926 ENSG00000235512 OTTHUMG00000021330 uc064ylr.1 BI002962 +HGNC:37723 TAB3P1 TGF-beta activated kinase 1/MAP3K7 binding protein 3 pseudogene 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 2010-02-05 2014-11-19 643199 ENSG00000235462 OTTHUMG00000036321 NG_005581 +HGNC:11517 TAC1 tachykinin precursor 1 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 NPK "substance K|substance P|neurokinin 1|neurokinin 2|neuromedin L|neurokinin alpha|neuropeptide K|neuropeptide gamma|preprotachykinin|protachykinin" "TAC2|NKNA" tachykinin, precursor 1 (substance K, substance P, neurokinin 1, neurokinin 2, neuromedin L, neurokinin alpha, neuropeptide K, neuropeptide gamma) Endogenous ligands 542 1991-12-11 2015-11-26 2016-10-05 6863 ENSG00000006128 OTTHUMG00000154069 uc003uop.5 M68907 NM_003182 "CCDS5649|CCDS5650|CCDS5651" P20366 1708336 MGI:98474 RGD:3807 TAC1 162320 +HGNC:11521 TAC3 tachykinin 3 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "ZNEUROK1|NKB" preprotachykinin-B NKNB "neuromedin K|neurokinin beta" Endogenous ligands 542 1986-01-01 2008-07-31 2015-09-15 6866 ENSG00000166863 OTTHUMG00000156958 uc058prt.1 AF186112 NM_001006667 "CCDS8928|CCDS53803" Q9UHF0 "3479225|10866201" MGI:98476 RGD:3809 TAC3 162330 178814 +HGNC:16641 TAC4 tachykinin 4 (hemokinin) protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "HK-1|Pptc|PPT-C" Endogenous ligands 542 2004-10-20 2014-01-30 255061 ENSG00000176358 OTTHUMG00000161830 uc002ipo.1 AF521560 NM_170685 "CCDS42357|CCDS42358|CCDS42359|CCDS42360|CCDS45727" Q86UU9 "11062498|12383518" MGI:1931130 RGD:628842 TAC4 607833 +HGNC:11522 TACC1 transforming acidic coiled-coil containing protein 1 protein-coding gene gene with protein product Approved 8p11.22 08p11.22 transforming, acidic coiled-coil containing protein 1 1998-07-10 2016-02-01 2016-10-05 6867 ENSG00000147526 OTTHUMG00000164018 uc010lwp.3 AF049910 NM_006283 "CCDS6109|CCDS47845|CCDS55224|CCDS83284" O75410 MGI:2443510 RGD:1303120 TACC1 605301 311455 +HGNC:44974 TACC1P1 transforming acidic coiled-coil containing protein 1 pseudogene 1 pseudogene pseudogene Approved 10p11.21 10p11.21 transforming, acidic coiled-coil containing protein 1 pseudogene 1 2012-12-20 2016-02-01 2016-02-01 219752 ENSG00000224920 OTTHUMG00000017974 NG_022170 PGOHUM00000238728 +HGNC:11523 TACC2 transforming acidic coiled-coil containing protein 2 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 AZU-1 transforming, acidic coiled-coil containing protein 2 1998-10-12 2016-02-01 2016-10-05 10579 ENSG00000138162 OTTHUMG00000019181 uc001lfv.4 AF095791 XM_005269389 "CCDS7625|CCDS7626|CCDS7627|CCDS7628|CCDS76348|CCDS76349|CCDS76351|CCDS76352" O95359 14767476 MGI:1928899 RGD:1303004 TACC2 605302 +HGNC:11524 TACC3 transforming acidic coiled-coil containing protein 3 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 ERIC1 transforming, acidic coiled-coil containing protein 3 1998-10-12 2016-02-01 2016-02-01 10460 ENSG00000013810 OTTHUMG00000089535 uc003gdo.4 AF093543 XM_005247929 CCDS3352 Q9Y6A5 17675670 MGI:1341163 RGD:1302948 TACC3 605303 311452 +HGNC:24316 TACO1 translational activator of cytochrome c oxidase I protein-coding gene gene with protein product Approved 17q23.3 17q23.3 CCDC44 "coiled-coil domain containing 44|translational activator of mitochondrially encoded cytochrome c oxidase I" 2005-12-16 2009-06-26 2016-04-11 2016-04-11 51204 ENSG00000136463 OTTHUMG00000178904 uc002jbd.3 BC005049 NM_016360 CCDS11640 Q9BSH4 19503089 MGI:1917457 RGD:1306784 TACO1 612958 201567 +HGNC:11526 TACR1 tachykinin receptor 1 protein-coding gene gene with protein product Approved 2p12 02p12 "SPR|NK1R|NKIR" TAC1R Tachykinin receptors 258 1991-12-11 2016-10-05 6869 ENSG00000115353 OTTHUMG00000129973 uc002sng.3 M76675 NM_001058 "CCDS1958|CCDS46345" P25103 1657150 MGI:98475 RGD:3811 TACR1 162323 objectId:360 +HGNC:11527 TACR2 tachykinin receptor 2 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "SKR|NK2R" "TAC2R|NKNAR" Tachykinin receptors 258 1991-03-04 2015-08-26 6865 ENSG00000075073 OTTHUMG00000018377 uc001jpn.3 NM_001057 CCDS7293 P21452 MGI:98477 RGD:3812 TACR2 162321 objectId:361 +HGNC:11528 TACR3 tachykinin receptor 3 protein-coding gene gene with protein product Approved 4q24 04q24 NK3R neurokinin beta receptor Tachykinin receptors 258 1997-11-28 2016-10-05 6870 ENSG00000169836 OTTHUMG00000131124 uc003hxe.2 M89473 NM_001059 CCDS3664 P29371 1374246 MGI:892968 RGD:3810 TACR3 162332 178819 objectId:362 +HGNC:11530 TACSTD2 tumor-associated calcium signal transducer 2 protein-coding gene gene with protein product Approved 1p32.1 01p32.1 "TROP2|GA733-1|EGP-1" M1S1 1989-11-20 2016-10-05 4070 ENSG00000184292 OTTHUMG00000010067 uc001cyz.5 X77753 NM_002353 CCDS609 P09758 "8382772|11306819" MGI:1861606 RGD:1359498 TACSTD2 137290 119910 objectId:2837 +HGNC:30631 TADA1 transcriptional adaptor 1 protein-coding gene gene with protein product Approved 1q24.1 01q24.1 "STAF42|ADA1|hADA1|HFI1" TADA1L "transcriptional adaptor 1 (HFI1 homolog, yeast)-like|transcriptional adaptor 1 (HFI1 homolog, yeast)" SAGA complex 1059 2005-06-10 2009-10-02 2009-10-02 2014-11-19 117143 ENSG00000152382 OTTHUMG00000034321 uc001gdw.4 BC015401 NM_053053 CCDS1255 Q96BN2 11564863 MGI:1196415 RGD:1306774 TADA1 612763 +HGNC:11531 TADA2A transcriptional adaptor 2A protein-coding gene gene with protein product Approved 17q12 17q12 "ADA2|hADA2|ADA2A" TADA2L transcriptional adaptor 2 (ADA2 homolog, yeast)-like "Myb/SANT domain containing|ATAC complex" "532|1058" 1996-12-17 2009-10-02 2009-10-02 2016-10-05 6871 ENSG00000276234 OTTHUMG00000188469 uc002hnt.4 AK022767 NM_001488 "CCDS11319|CCDS45656" O75478 8552087 MGI:2144471 RGD:1309959 TADA2A 602276 +HGNC:30781 TADA2B transcriptional adaptor 2B protein-coding gene gene with protein product Approved 4p16.1 04p16.1 MGC21874 "Zinc fingers ZZ-type|Myb/SANT domain containing|SAGA complex" "91|532|1059" 2009-10-02 2015-08-26 93624 ENSG00000173011 OTTHUMG00000159983 uc003gjw.5 AK026299 NM_152293 CCDS47007 Q86TJ2 "12972612|18936164" MGI:3035274 RGD:1561605 TADA2B 608790 +HGNC:19422 TADA3 transcriptional adaptor 3 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "FLJ20221|FLJ21329|ADA3|hADA3|NGG1" alteration/deficiency in activation 3 TADA3L transcriptional adaptor 3 (NGG1 homolog, yeast)-like "ATAC complex|SAGA complex" "1058|1059" 2003-02-13 2009-10-02 2009-10-02 2016-04-18 10474 ENSG00000171148 OTTHUMG00000128440 uc003bsx.3 AF069733 NM_006354 "CCDS2583|CCDS2584" O75528 "9674425|11707411" MGI:1915724 RGD:1564009 TADA3 602945 +HGNC:11535 TAF1 TATA-box binding protein associated factor 1 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "NSCL2|TAFII250|KAT4|DYT3/TAF1" "TAF2A|BA2R|CCG1|CCGS|DYT3" "TATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 250kD|dystonia 3 (with Parkinsonism)|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa" Lysine acetyltransferases 486 1986-01-01 2001-12-07 2015-11-20 2015-11-20 6872 ENSG00000147133 OTTHUMG00000022723 uc004dzt.6 NM_004606 "CCDS14412|CCDS35325|CCDS69783" P21675 "3556424|12928496|17952504" MGI:1336878 RGD:1562050 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TAF1 TAF1 313650 139199 objectId:2231 +HGNC:11532 TAF1A TATA-box binding protein associated factor, RNA polymerase I subunit A protein-coding gene gene with protein product Approved 1q41 01q41 "TAFI48|SL1" "TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kD|TATA box binding protein (TBP)-associated factor, RNA polymerase I, A, 48kDa" 1999-01-18 2016-03-01 2016-10-05 9015 ENSG00000143498 OTTHUMG00000037544 uc009xdz.2 L39060 NM_005681 "CCDS1531|CCDS1532" Q15573 7801123 MGI:109578 RGD:1305698 TAF1A 604903 +HGNC:40573 TAF1A-AS1 TAF1A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q41 01q41 2014-05-21 2014-11-19 100506161 ENSG00000225265 OTTHUMG00000037542 NR_110613 +HGNC:11533 TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "TAFI63|SL1|RAF1B|RAFI63" "TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kD|TATA box binding protein (TBP)-associated factor, RNA polymerase I, B, 63kDa" 1999-01-18 2016-03-01 2016-10-05 9014 ENSG00000115750 OTTHUMG00000151673 uc002qzz.4 L39061 NM_005680 CCDS33143 Q53T94 7801123 MGI:109577 RGD:1596058 TAF1B 604904 +HGNC:11534 TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C protein-coding gene gene with protein product Approved 16q24 16q24 "TAFI110|TAFI95|SL1|MGC:39976" "TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kD|TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa" 1999-01-18 2016-03-01 2016-03-01 9013 ENSG00000103168 OTTHUMG00000176665 uc002fhn.4 L39059 NM_139353 "CCDS32496|CCDS45535|CCDS58488|CCDS58489" Q15572 7801123 MGI:109576 RGD:1305658 TAF1C 604905 +HGNC:28759 TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D protein-coding gene gene with protein product Approved 11q21 11q21 "MGC5306|TAF(I)41" JOSD3 "Josephin domain containing 3|TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa" 2005-11-10 2008-09-30 2016-03-01 2016-03-01 79101 ENSG00000166012 OTTHUMG00000167451 uc001ped.5 NM_024116 CCDS8293 Q9H5J8 "15520167|17318177" MGI:1922566 RGD:1309627 TAF1D 612823 +HGNC:18056 TAF1L TATA-box binding protein associated factor 1 like protein-coding gene gene with protein product Approved 9p21.1 09p21.1 "TAF1-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa|TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 210kDa-like" 2002-11-13 2015-11-20 2016-10-05 138474 ENSG00000122728 OTTHUMG00000019747 uc003zrg.1 AF390562 NM_153809 CCDS35003 Q8IZX4 12217962 TAF1L 607798 objectId:2232 +HGNC:11536 TAF2 TATA-box binding protein associated factor 2 protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "TAFII150|CIF150" TAF2B "TATA box binding protein (TBP)-associated factor, RNA polymerase II, B, 150kD|TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa" 1995-07-07 2001-12-07 2015-11-20 2016-10-05 6873 ENSG00000064313 OTTHUMG00000165009 uc003you.4 AF040701 NM_003184 CCDS34937 Q6P1X5 "9774672|9418870" MGI:2443028 RGD:621487 TAF2 604912 401879 M01.972 +HGNC:17303 TAF3 TATA-box binding protein associated factor 3 protein-coding gene gene with protein product Approved 10p14 10p14 "TAF140|TAFII140" "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140 kD|TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" PHD finger proteins 88 2001-12-03 2015-11-20 2016-10-05 83860 ENSG00000165632 OTTHUMG00000017643 uc010qbd.4 AJ292190 NM_031923 CCDS41487 Q5VWG9 "11438666|18549481" MGI:2388097 TAF3 606576 +HGNC:11537 TAF4 TATA-box binding protein associated factor 4 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "TAFII130|TAFII135" "TAF4A|TAF2C1|TAF2C" "TATA box binding protein (TBP)-associated factor, RNA polymerase II, C1, 130kD|TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa" 1995-07-07 2002-01-18 2015-11-20 2015-11-20 6874 ENSG00000130699 OTTHUMG00000032893 uc002ybs.3 Y11354 NM_003185 CCDS33500 O00268 "8942982|9192867" MGI:2152346 RGD:1588072 TAF4 601796 +HGNC:11538 TAF4B TATA-box binding protein associated factor 4b protein-coding gene gene with protein product Approved 18q11.1 18q11.1 TAFII105 TATA box binding protein (TBP)-associated factor 4B TAF2C2 "TATA box binding protein (TBP)-associated factor, RNA polymerase II, C2, 105kD|TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa" 1997-05-09 2001-12-07 2015-11-20 2015-11-20 6875 ENSG00000141384 OTTHUMG00000179429 uc002kvu.5 Y09321 NM_005640 "CCDS42421|CCDS77170" Q92750 "8858156|10849440" MGI:2152345 RGD:1562997 TAF4B 601689 401597 +HGNC:11539 TAF5 TATA-box binding protein associated factor 5 protein-coding gene gene with protein product Approved 10q24.33 10q24.33 TAFII100 TAF2D "TATA box binding protein (TBP)-associated factor, RNA polymerase II, D, 100kD|TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa" WD repeat domain containing 362 1995-07-07 2001-12-07 2015-11-20 2016-10-05 6877 ENSG00000148835 OTTHUMG00000018985 uc001kwv.5 X95525 NM_006951 CCDS7547 Q15542 "8884287|8942982" MGI:2442144 RGD:1311332 TAF5 601787 +HGNC:17304 TAF5L TATA-box binding protein associated factor 5 like protein-coding gene gene with protein product Approved 1q42.13 01q42.13 PAF65B PCAF associated factor 65 beta "TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65 kD|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa" WD repeat domain containing 362 2001-12-04 2015-11-20 2016-10-05 27097 ENSG00000135801 OTTHUMG00000039463 uc001htq.5 AF069736 NM_014409 "CCDS1581|CCDS31051" O75529 "9674425|11124703" MGI:1919039 RGD:1310215 TAF5L +HGNC:24115 TAF5LP1 TATA-box binding protein associated factor 5 like pseudogene 1 pseudogene pseudogene Approved 17q12 17q12 HsT33855 TAF5LP "TAF5-like RNA polymerase II pseudogene|TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa pseudogene 1" 2005-12-20 2010-09-21 2016-06-22 2016-06-22 645744 NG_022466 PGOHUM00000237366 +HGNC:11540 TAF6 TATA-box binding protein associated factor 6 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "TAFII70|TAFII80|MGC:8964|TAFII85" "TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80 kD|transcription initiation factor TFIID 70 kD subunit" TAF2E "TATA box binding protein (TBP)-associated factor, RNA polymerase II, E, 70/85kD|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa" 1995-07-07 2001-12-07 2015-11-20 2016-10-05 6878 ENSG00000106290 OTTHUMG00000154771 uc003utk.3 NM_005641 "CCDS5686|CCDS55135" P49848 826207 MGI:109129 RGD:1311608 TAF6 602955 +HGNC:17305 TAF6L TATA-box binding protein associated factor 6 like protein-coding gene gene with protein product Approved 11q12.3 11q12.3 PAF65A "TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65 kD|TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa" SAGA complex 1059 2001-12-03 2015-11-20 2015-11-20 10629 ENSG00000162227 OTTHUMG00000167610 uc001nvc.4 BC008785 NM_006473 CCDS8035 Q9Y6J9 9674425 MGI:2444957 RGD:1310123 TAF6L 602946 +HGNC:11541 TAF7 TATA-box binding protein associated factor 7 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 TAFII55 TAF2F "TATA box binding protein (TBP)-associated factor, RNA polymerase II, F, 55kD|TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa" 1995-07-07 2001-12-07 2015-11-20 2016-10-05 6879 ENSG00000178913 OTTHUMG00000129628 uc003ljg.4 AF349038 NM_005642 CCDS4259 Q15545 7824954 MGI:1346348 RGD:1309935 TAF7 600573 +HGNC:11548 TAF7L TATA-box binding protein associated factor 7 like protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 CT40 cancer/testis antigen 40 TAF2Q "TATA box binding protein (TBP)-associated factor, RNA polymerase II, Q|TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa" 2000-06-29 2001-12-07 2015-11-20 2015-11-20 54457 ENSG00000102387 OTTHUMG00000022021 uc004ehb.4 AF285595 NM_024885 "CCDS35347|CCDS55466" Q5H9L4 11279525 MGI:1921719 RGD:1564898 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TAF7L TAF7L 300314 +HGNC:17300 TAF8 TATA-box binding protein associated factor 8 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "FLJ32821|TAF(II)43" TBN "TATA box binding protein (TBP)-associated factor, RNA polymerase II, A, 45/50kDa|taube nuss homolog (mouse)|TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 43kDa" 2001-12-03 2007-07-30 2015-11-20 2015-11-20 129685 ENSG00000137413 OTTHUMG00000014692 uc003ors.4 AK057383 NM_138572 CCDS43462 Q7Z7C8 MGI:1926879 RGD:1308423 TAF8 609514 +HGNC:11542 TAF9 TATA-box binding protein associated factor 9 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "TAFII31|TAFII32|TAFIID32|MGC5067|CGI-137|MGC1603|MGC3647|AD-004" TAF2G "TATA box binding protein (TBP)-associated factor, RNA polymerase II, G, 32kD|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa" 1995-07-13 2001-12-07 2015-11-20 2015-11-20 6880 ENSG00000273841 OTTHUMG00000099359 uc003jwf.2 U21858 NM_001015892 "CCDS4001|CCDS4002|CCDS43324" Q16594 "10191103|15630091|16079131" MGI:1888697 RGD:727861 TAF9 600822 +HGNC:17306 TAF9B TATA-box binding protein associated factor 9b protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "TAFII31L|DN-7|DN7|TFIID-31" TAF9L "TAF9-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa|TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa" 2001-12-03 2006-01-04 2015-11-20 2016-10-05 51616 ENSG00000187325 OTTHUMG00000021887 uc004eda.4 AF220509 NM_015975 CCDS35340 Q9HBM6 15899866 MGI:3039562 RGD:621116 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TAF9B TAF9B 300754 +HGNC:30687 TAF9BP1 TATA-box binding protein associated factor 9b pseudogene 1 pseudogene pseudogene Approved 3p24.2 03p24.2 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 1 2010-08-16 2015-11-20 2015-11-20 246135 ENSG00000213871 OTTHUMG00000155604 NG_001574 PGOHUM00000237966 +HGNC:38836 TAF9BP2 TATA-box binding protein associated factor 9b pseudogene 2 pseudogene pseudogene Approved 10q25.3 10q25.3 TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 2 2010-08-16 2015-11-20 2015-11-20 100130319 ENSG00000215760 OTTHUMG00000019091 NG_028760 PGOHUM00000238928 +HGNC:31743 TAF9P1 TATA-box binding protein associated factor 9 pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 "TAF9 pseudogene 1|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 1" 2004-06-24 2015-11-20 2016-10-05 360002 ENSG00000226353 OTTHUMG00000041658 NG_002930 12815422 PGOHUM00000233971 +HGNC:31744 TAF9P2 TATA-box binding protein associated factor 9 pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 "TAF9 pseudogene 2|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 2" 2004-06-24 2015-11-20 2016-10-05 360003 ENSG00000229302 OTTHUMG00000041966 NG_002931 12815422 PGOHUM00000233771 +HGNC:30678 TAF9P3 TATA-box binding protein associated factor 9 pseudogene 3 pseudogene pseudogene Approved 19q12 19q12 TAF2GL TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa pseudogene 3 2010-07-21 2015-11-20 2015-11-20 163088 ENSG00000267692 OTTHUMG00000182104 NG_001012 10191103 PGOHUM00000234653 +HGNC:11543 TAF10 TATA-box binding protein associated factor 10 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 TAFII30 "TAF2H|TAF2A" "TATA box binding protein (TBP)-associated factor, RNA polymerase II, H, 30kD|TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa" SAGA complex 1059 1995-05-16 2001-12-07 2015-11-20 2016-10-05 6881 ENSG00000166337 OTTHUMG00000133402 uc001mej.3 "U13991|U25816" NM_006284 CCDS7769 Q12962 7923369 MGI:1346320 RGD:1305907 TAF10 600475 +HGNC:11544 TAF11 TATA-box binding protein associated factor 11 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 TAFII28 TAF2I "TATA box binding protein (TBP)-associated factor, RNA polymerase II, I, 28kD|TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa" 1995-07-13 2001-12-07 2015-11-20 2016-10-05 6882 ENSG00000064995 OTTHUMG00000014556 uc003ojw.3 X83928 NM_005643 "CCDS4797|CCDS59014" Q15544 "7729427|8820923" MGI:1916026 RGD:1305626 TAF11 600772 +HGNC:11545 TAF12 TATA-box binding protein associated factor 12 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 TAFII20 TAF2J "TATA box binding protein (TBP)-associated factor, RNA polymerase II, J, 20kD|TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa" SAGA complex 1059 1995-07-13 2001-12-07 2015-11-20 2016-10-05 6883 ENSG00000120656 OTTHUMG00000003655 uc001bqy.5 BC011986 NM_005644 CCDS326 Q16514 7729427 MGI:1913714 RGD:1592841 TAF12 600773 +HGNC:11546 TAF13 TATA-box binding protein associated factor 13 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 TAFII18 TAF2K "TATA box binding protein (TBP)-associated factor, RNA polymerase II, K, 18kD|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa" 1995-07-13 2001-12-07 2015-11-20 2015-11-20 6884 ENSG00000197780 OTTHUMG00000042363 uc001dwm.2 XM_496381 NM_005645 CCDS30788 Q15543 7729427 MGI:1913500 RGD:1305398 TAF13 600774 +HGNC:18699 TAF13P1 TATA-box binding protein associated factor 13 pseudogene 1 pseudogene pseudogene Approved 6q14.3-q15 06q14.3-q15 TAF13P "TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene|TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene 1" 2002-05-29 2010-04-22 2015-11-20 2015-11-20 246112 AL049697 NG_001573 PGOHUM00000243285 +HGNC:38161 TAF13P2 TATA-box binding protein associated factor 13 pseudogene 2 pseudogene pseudogene Approved 2p13.1 02p13.1 TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa pseudogene 2 2010-04-22 2015-11-20 2015-11-20 100462886 ENSG00000225658 OTTHUMG00000152793 NG_021566 PGOHUM00000240691 +HGNC:11547 TAF15 TATA-box binding protein associated factor 15 protein-coding gene gene with protein product Approved 17q12 17q12 "hTAFII68|RBP56|Npl3" TAF2N "TATA box binding protein (TBP)-associated factor, RNA polymerase II, N, 68kD (RNA-binding protein 56)|TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDa" "Zinc fingers RANBP2-type |RNA binding motif containing" "89|725" 1999-03-08 2001-12-07 2015-11-20 2016-01-15 8148 ENSG00000270647 OTTHUMG00000188384 uc002hkd.4 U51334 NM_139215 "CCDS32623|CCDS59279" Q92804 "8954779|9795213" MGI:1917689 RGD:1309595 TAF15 601574 361085 +HGNC:15669 TAGAP T-cell activation RhoGTPase activating protein protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "FLJ32631|IDDM21|ARHGAP47" T-cell activation GTPase activating protein Rho GTPase activating proteins 721 2001-07-20 2008-03-25 2014-11-19 117289 ENSG00000164691 OTTHUMG00000015923 uc003qrz.5 AF385429 NM_054114 "CCDS5261|CCDS5262|CCDS5263" Q8N103 "16375659|18311140|18356936" MGI:1919786 RGD:1308618 TAGAP 609667 +HGNC:11553 TAGLN transgelin protein-coding gene gene with protein product Approved 11q23.2 11q23.2 "SM22|WS3-10|TAGLN1|SMCC|DKFZp686P11128" "SM22-alpha|transgelin variant 2" 1998-01-16 2014-11-19 6876 ENSG00000149591 OTTHUMG00000167067 uc001pqn.4 M95787 NM_001001522 CCDS8381 Q01995 "8117285|1520290" MGI:106012 RGD:3723 TAGLN 600818 +HGNC:11554 TAGLN2 transgelin 2 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "KIAA0120|HA1756" SM22-alpha homolog 1998-09-03 2016-10-05 8407 ENSG00000158710 OTTHUMG00000022793 uc001fun.3 D21261 NM_003564 "CCDS1189|CCDS60314" P37802 9693045 MGI:1312985 RGD:1310840 TAGLN2 604634 +HGNC:21739 TAGLN2P1 transgelin 2 pseudogene 1 pseudogene pseudogene Approved 8q23.1 08q23.1 2004-11-16 2014-11-19 100418887 ENSG00000253676 OTTHUMG00000164808 NG_026067 PGOHUM00000249475 +HGNC:31039 TAGLN2P2 transgelin 2 pseudogene 2 pseudogene pseudogene Approved 8p12 08p12 2004-11-16 2014-11-19 642319 NG_022383 +HGNC:29868 TAGLN3 transgelin 3 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 "NP25|NP22" 2004-11-16 2014-11-19 29114 ENSG00000144834 OTTHUMG00000159281 uc003dyl.4 AF303058 NM_013259 CCDS33816 Q9UI15 "8015377|11238712" MGI:1926784 RGD:69301 TAGLN3 607953 +HGNC:11556 TAL1 TAL bHLH transcription factor 1, erythroid differentiation factor protein-coding gene gene with protein product Approved 1p33 01p33 "SCL|bHLHa17" TCL5 T-cell acute lymphocytic leukemia 1 Basic helix-loop-helix proteins 420 1989-05-31 2016-06-27 2016-10-05 6886 ENSG00000162367 OTTHUMG00000007847 uc001cqy.3 M29038 NM_003189 CCDS547 P17542 2740341 MGI:98480 RGD:1306748 TAL1 187040 119916 +HGNC:11557 TAL2 TAL bHLH transcription factor 2 protein-coding gene gene with protein product Approved 9q31.2 09q31.2 bHLHa19 T-cell acute lymphocytic leukemia 2 Basic helix-loop-helix proteins 420 1990-07-15 2016-06-27 2016-10-05 6887 ENSG00000186051 OTTHUMG00000020424 uc004bct.4 NM_005421 CCDS6767 Q16559 1763056 MGI:99540 RGD:1596467 TAL2 186855 +HGNC:11559 TALDO1 transaldolase 1 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 1997-10-17 2016-10-05 6888 ENSG00000177156 OTTHUMG00000133318 uc001lqz.4 NM_006755 CCDS7712 P37837 9339383 MGI:1274789 RGD:620674 TALDO1 602063 183893 2.2.1.2 +HGNC:11560 TALDO1P1 transaldolase 1 pseudogene 1 pseudogene pseudogene Approved 1p32.3 01p32.3 TAL-H "TALDO|TALDOP1" transaldolase pseudogene 1 1996-11-13 2010-01-06 2010-01-06 2010-01-06 6889 NG_009424 8300619 +HGNC:25187 TAMM41 TAM41 mitochondrial translocator assembly and maintenance homolog protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "MGC16471|DKFZp434E0519" C3orf31 "chromosome 3 open reading frame 31|TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae)" 2005-12-22 2011-08-09 2015-09-25 2015-09-25 132001 ENSG00000144559 OTTHUMG00000129741 uc003bwh.4 NM_138807 "CCDS2607|CCDS68345" Q96BW9 "16943180|19237595" MGI:1916221 RGD:1586150 614948 +HGNC:29364 TANC1 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "KIAA1728|ROLSB" rolling pebbles homolog B (Drosophila) "Ankyrin repeat domain containing|Tetratricopeptide repeat domain containing" "403|769" 2005-11-18 2016-07-20 85461 ENSG00000115183 OTTHUMG00000153945 uc002uag.4 AB051515 XM_017005141 CCDS42766 Q9C0D5 "15673434|22182840" MGI:1914110 RGD:1302949 TANC1 611397 +HGNC:30212 TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding gene gene with protein product Approved 17q23.2-q23.3 17q23.2-q23.3 "DKFZP564D166|FLJ10215|FLJ11824|KIAA1148|KIAA1636|rols|ROLSA" rolling pebbles homolog B (Drosophila) "Ankyrin repeat domain containing|Tetratricopeptide repeat domain containing" "403|769" 2005-11-18 2016-10-11 26115 ENSG00000170921 OTTHUMG00000179103 uc002jal.5 AB032974 XM_011524597 CCDS45754 Q9HCD6 21068316 MGI:2444121 RGD:1309285 TANC2 615047 +HGNC:25439 TANGO2 transport and golgi organization 2 homolog protein-coding gene gene with protein product Approved 22q11.21 22q11.21 DKFZp761P1121 C22orf25 "chromosome 22 open reading frame 25|transport and golgi organization 2 homolog (Drosophila)" 2006-02-17 2012-12-13 2015-07-03 2016-06-22 128989 ENSG00000183597 OTTHUMG00000150510 uc002zrc.3 NM_152906 "CCDS13772|CCDS63404|CCDS63405|CCDS63406|CCDS63407|CCDS74821|CCDS74822" Q6ICL3 "26805781|26805782" MGI:101825 RGD:1310348 TANGO2 616830 +HGNC:25749 TANGO6 transport and golgi organization 6 homolog protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "FLJ12688|KIAA1746" TMCO7 "transmembrane and coiled-coil domains 7|transport and golgi organization 6 homolog (Drosophila)" 2006-11-17 2012-12-13 2015-07-03 2015-07-03 79613 ENSG00000103047 OTTHUMG00000176743 uc002ewi.5 XM_928235.2 CCDS45516 Q9C0B7 11214970 MGI:2142786 RGD:1559841 +HGNC:11562 TANK TRAF family member associated NFKB activator protein-coding gene gene with protein product Approved 2q24.2 02q24.2 I-TRAF TRAF2 TRAF family member-associated NFKB activator 1997-06-12 2015-11-19 2015-11-19 10010 ENSG00000136560 OTTHUMG00000132037 uc002ubr.3 U59863 NM_133484 "CCDS2215|CCDS46436" Q92844 "8710854|8855313" MGI:107676 RGD:628859 TANK 603893 +HGNC:29259 TAOK1 TAO kinase 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "KIAA1361|MARKK|PSK2|MAP3K16|FLJ14314|TAO1" Mitogen-activated protein kinase kinase kinases 654 2004-10-20 2015-08-26 57551 ENSG00000160551 OTTHUMG00000179718 uc002hdz.3 AB037782 NM_020791 "CCDS32601|CCDS56024" Q7L7X3 "10718198|14517247" MGI:1914490 RGD:708455 TAOK1 610266 objectId:2233 +HGNC:16835 TAOK2 TAO kinase 2 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "TAO1|KIAA0881|PSK|PSK1|TAO2|MAP3K17" Mitogen-activated protein kinase kinase kinases 654 2004-10-20 2015-08-26 9344 ENSG00000149930 OTTHUMG00000132111 uc002dva.3 AB020688 NM_016151 "CCDS10662|CCDS10663|CCDS58448" Q9UL54 "10048485|9786855" MGI:1915919 RGD:621590 TAOK2 613199 objectId:2234 +HGNC:18133 TAOK3 TAO kinase 3 protein-coding gene gene with protein product Approved 12q 12q "JIK|DPK|MAP3K18" Mitogen-activated protein kinase kinase kinases 654 2004-10-20 2016-07-08 51347 ENSG00000135090 OTTHUMG00000168875 uc001twy.4 AF135158 NM_016281 CCDS9188 Q9H2K8 "10559204|10924369" MGI:3041177 RGD:1562861 TAOK3 616711 objectId:2235 2.7.11.1 +HGNC:43 TAP1 transporter 1, ATP binding cassette subfamily B member protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "PSF1|RING4|D6S114E" ABCB2 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) ATP binding cassette subfamily B 806 1992-06-25 2016-06-21 2016-10-12 6890 ENSG00000168394 OTTHUMG00000031067 uc003ocg.4 NM_000593 CCDS4758 Q03518 "1529427|1946428" MGI:98483 RGD:3817 "TAP1base: Mutation registry for TAP1 deficiency|http://structure.bmc.lu.se/idbase/TAP1base/|IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/|LRG_166|http://www.lrg-sequence.org/LRG/LRG_166" TAP1 170260 123369 objectId:769 +HGNC:44 TAP2 transporter 2, ATP binding cassette subfamily B member protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "PSF2|RING11|D6S217E" ABCB3 transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) ATP binding cassette subfamily B 806 1992-06-25 2016-06-21 2016-10-12 6891 ENSG00000204267 OTTHUMG00000031068 uc063nrw.1 M74447 NM_000544 "CCDS4755|CCDS78129" Q03519 "1529427|1946428|16395595" MGI:98484 RGD:3818 "TAP2base: Mutation registry for TAP2 deficiency|http://structure.bmc.lu.se/idbase/TAP2base/|IMGT/HLA Database|http://www.ebi.ac.uk/imgt/hla/|LRG_167|http://www.lrg-sequence.org/LRG/LRG_167" TAP2 170261 119922 objectId:770 +HGNC:11566 TAPBP TAP binding protein protein-coding gene gene with protein product Approved 6p21.32 06p21.32 TAPA tapasin TAP binding protein (tapasin) C1-set domain containing 591 1997-12-17 2016-08-10 2016-10-12 6892 ENSG00000231925 OTTHUMG00000031090 uc063uwb.1 Y13582 XM_017011227 "CCDS34426|CCDS34427|CCDS34428" O15533 9238042 MGI:1201689 RGD:3819 "TAPBPbase: Mutation registry for Tapasin deficiency|http://structure.bmc.lu.se/idbase/TAPBPbase/|LRG_114|http://www.lrg-sequence.org/LRG/LRG_114" TAPBP 601962 123371 +HGNC:30683 TAPBPL TAP binding protein like protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "TAPBP-R|FLJ10143|TAPBPR" TAP binding protein-like C1-set domain containing 591 2004-05-12 2016-03-11 2016-03-11 55080 ENSG00000139192 OTTHUMG00000168317 uc001qog.5 AK001005 NM_018009 CCDS8546 Q9BX59 11920573 MGI:2384853 RGD:1307893 TAPBPL 607081 +HGNC:26887 TAPT1 transmembrane anterior posterior transformation 1 protein-coding gene gene with protein product Approved 4p15.32 04p15.32 FLJ90013 2007-02-02 2015-01-12 202018 ENSG00000169762 OTTHUMG00000160177 uc010ied.2 AK074494 NM_153365 CCDS47030 Q6NXT6 17151244 MGI:2683537 RGD:1309656 TAPT1 612758 460737 +HGNC:26832 TAPT1-AS1 TAPT1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4p15.32 04p15.32 FLJ39653 2012-11-06 2012-11-06 2012-11-06 202020 ENSG00000263327 OTTHUMG00000160321 uc062vkf.1 NR_027696 +HGNC:11567 TAPVR1 total anomalous pulmonary venous return 1 phenotype phenotype only Approved 4p13-q11 04p13-q11 1994-12-14 2008-07-28 6893 106700 +HGNC:11568 TARBP1 TAR (HIV-1) RNA binding protein 1 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 "TRP-185|TRM3" tRNA methyltransferase 3 homolog (S. cerevisiae) Tar (HIV-1) RNA binding protein 1 SPOUT methyltranferase domain containing 1294 1992-12-10 2007-06-26 2015-09-08 6894 ENSG00000059588 OTTHUMG00000037947 uc001hwd.3 NM_005646 CCDS1601 Q13395 1936997 MGI:4936930 RGD:1589526 TARBP1 605052 +HGNC:11569 TARBP2 TARBP2, RISC loading complex RNA binding subunit protein-coding gene gene with protein product Approved 12q13.13 12q13.13 Trbp TAR (HIV-1) RNA binding protein 2 1994-04-12 2016-05-16 2016-05-16 6895 ENSG00000139546 OTTHUMG00000169855 uc001sdo.4 XM_017019910 "CCDS8861|CCDS41791" Q15633 "2011739|26582366" MGI:103027 RGD:1307375 TARBP2 605053 +HGNC:11570 TARBP2P1 TARBP2P1, RISC loading complex RNA binding subunit pseudogene 1 pseudogene pseudogene Approved 8q22.3 08q22.3 TRBP TARBP2P "Tar (HIV-1) RNA binding protein 2 pseudogene|TAR (HIV-1) RNA binding protein 2 pseudogene 1" 1994-04-12 2016-05-12 2016-05-16 2016-05-16 6896 AF197477 NG_001199 2011739 +HGNC:11571 TARDBP TAR DNA binding protein protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "TDP-43|ALS10" RNA binding motif containing 725 2000-01-28 2016-10-12 23435 ENSG00000120948 OTTHUMG00000002120 uc001art.4 U23731 NM_007375 CCDS122 Q13148 7745706 MGI:2387629 RGD:1310906 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_659|http://www.lrg-sequence.org/LRG/LRG_659" TARDBP 605078 158581 +HGNC:16536 TARDBPP1 TAR DNA binding protein pseudogene 1 pseudogene pseudogene Approved 20p12.3 20p12.3 bA318P23.1 TARDBPL TAR DNA binding protein-like 2001-09-17 2010-10-26 2010-10-26 2014-11-19 643503 ENSG00000233402 OTTHUMG00000031829 NG_009903 +HGNC:39848 TARDBPP2 TAR DNA binding protein pseudogene 2 pseudogene pseudogene Approved 13q21.2 13q21.2 2011-04-01 2011-04-01 440142 ENSG00000238213 OTTHUMG00000017006 NG_005965 PGOHUM00000248612 +HGNC:50506 TARID TCF21 antisense RNA inducing promoter demethylation non-coding RNA RNA, long non-coding Approved 6q23.2 06q23.2 EYA4-AS1 EYA4 antisense RNA 1 Long non-coding RNAs 788 2014-05-13 2014-08-20 2014-08-20 2014-08-21 100507308 ENSG00000227954 OTTHUMG00000015607 NR_109982 25087872 616058 +HGNC:37250 TARM1 T cell-interacting, activating receptor on myeloid cells 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 Immunoglobulin like domain containing 594 2009-12-14 2013-01-29 441864 ENSG00000248385 OTTHUMG00000064912 uc010yei.1 NM_001135686 "CCDS46173|CCDS82395" B6A8C7 MGI:2442280 RGD:1564272 TARM1 616802 +HGNC:11572 TARS threonyl-tRNA synthetase protein-coding gene gene with protein product Approved 5p13.3 05p13.3 threonine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class II 132 2001-06-22 2016-10-05 6897 ENSG00000113407 OTTHUMG00000090683 uc003jhy.5 AK095852 NM_152295 "CCDS3899|CCDS58943" P26639 MGI:106314 RGD:1359527 TARS 187790 6.1.1.3 +HGNC:30740 TARS2 threonyl-tRNA synthetase 2, mitochondrial (putative) protein-coding gene gene with protein product Approved 1q21.2 01q21.2 FLJ12528 threonine tRNA ligase 2, mitochondrial TARSL1 threonyl-tRNA synthetase-like 1 Aminoacyl tRNA synthetases, Class II 132 2004-11-10 2007-02-23 2007-02-23 2014-11-19 80222 ENSG00000143374 OTTHUMG00000012809 uc001euq.5 BC007824 NM_025150 "CCDS952|CCDS60251|CCDS60252" Q9BW92 MGI:1919057 RGD:1308283 TARS2 612805 432060 6.1.1.3 +HGNC:43712 TARS2P1 threonyl-tRNA synthetase 2, mitochondrial (putative) pseudogene 1 pseudogene pseudogene Approved 4q28.3 04q28.3 threonyl-tRNA synthetase 2, mitochondrial pseudogene 2012-02-02 2016-06-29 2016-06-29 100533844 ENSG00000248104 OTTHUMG00000161214 NG_028840 PGOHUM00000245702 +HGNC:24728 TARSL2 threonyl-tRNA synthetase like 2 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 FLJ25005 2004-11-10 2016-06-29 2016-06-29 123283 ENSG00000185418 OTTHUMG00000149869 uc002bxm.4 AL833188 NM_152334 CCDS10394 A2RTX5 MGI:2444486 RGD:1311308 TARSL2 +HGNC:14448 TAS1R1 taste 1 receptor member 1 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "T1R1|TR1" GPR70 "G protein-coupled receptor 70|taste receptor, type 1, member 1" Taste 1 receptors 1161 2001-03-21 2015-12-16 2015-12-16 80835 ENSG00000173662 OTTHUMG00000001441 uc001ant.4 NM_138697 "CCDS81|CCDS82" Q7RTX1 "12856281|11894099" MGI:1927505 RGD:61891 TAS1R1 606225 objectId:656 +HGNC:14905 TAS1R2 taste 1 receptor member 2 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "T1R2|TR2" GPR71 "G protein-coupled receptor 71|taste receptor, type 1, member 2" Taste 1 receptors 1161 2001-03-21 2015-12-16 2015-12-16 80834 ENSG00000179002 OTTHUMG00000002442 uc001bba.2 NM_152232 CCDS187 Q8TE23 MGI:1933546 RGD:61894 TAS1R2 606226 objectId:657 +HGNC:15661 TAS1R3 taste 1 receptor member 3 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 T1R3 taste receptor, type 1, member 3 Taste 1 receptors 1161 2001-05-02 2015-12-16 2016-10-05 83756 ENSG00000169962 OTTHUMG00000003071 uc010nyk.3 AC026283 XM_017002435 CCDS30556 Q7RTX0 11319557 MGI:1933547 RGD:620539 TAS1R3 605865 objectId:658 +HGNC:14909 TAS2R1 taste 2 receptor member 1 protein-coding gene gene with protein product Approved 5p15.31 05p15.31 "T2R1|TRB7" taste receptor, type 2, member 1 Taste 2 receptors 1162 2001-03-21 2015-12-16 2016-10-05 50834 ENSG00000169777 OTTHUMG00000090500 uc003jem.2 AF227129 NM_019599 CCDS3876 Q9NYW7 "10761934|10766242" MGI:2681253 RGD:620733 TAS2R1 604796 objectId:659 +HGNC:20615 TAS2R2P taste 2 receptor member 2 pseudogene pseudogene pseudogene Approved 7p21.3 07p21.3 "T2R02|T2R2" TAS2R2 "taste receptor, type 2, member 2|taste receptor, type 2, member 2 pseudogene|taste receptor, type 2, member 2, pseudogene" Taste 2 receptors 1162 2003-03-12 2012-04-27 2015-12-16 2015-12-16 338396 ENSG00000203523 OTTHUMG00000152381 AX097698 NG_005302 PGOHUM00000233131 +HGNC:14910 TAS2R3 taste 2 receptor member 3 protein-coding gene gene with protein product Approved 7q34 07q34 T2R3 taste receptor, type 2, member 3 Taste 2 receptors 1162 2001-03-16 2015-12-16 2016-10-05 50831 ENSG00000127362 OTTHUMG00000157637 uc003vwp.1 AF227130 NM_016943 CCDS5867 Q9NYW6 MGI:3606604 RGD:1560602 TAS2R3 604868 objectId:660 +HGNC:14911 TAS2R4 taste 2 receptor member 4 protein-coding gene gene with protein product Approved 7q34 07q34 T2R4 taste receptor, type 2, member 4 Taste 2 receptors 1162 2001-03-16 2015-12-16 2015-12-16 50832 ENSG00000127364 OTTHUMG00000157634 uc003vwq.2 AF227131 NM_016944 CCDS5868 Q9NYW5 "10761934|10761935" MGI:2681210 RGD:1561194 TAS2R4 604869 objectId:661 +HGNC:14912 TAS2R5 taste 2 receptor member 5 protein-coding gene gene with protein product Approved 7q34 07q34 T2R5 taste receptor, type 2, member 5 Taste 2 receptors 1162 2001-03-16 2015-12-16 2016-10-05 54429 ENSG00000127366 OTTHUMG00000157632 uc003vwr.2 AF227132 NM_018980 CCDS5869 Q9NYW4 TAS2R5 605062 objectId:662 +HGNC:20616 TAS2R6P taste 2 receptor member 6 pseudogene pseudogene pseudogene Approved 7q34 07q34 "T2R06|T2R6" TAS2R6 "taste receptor, type 2, member 6|taste receptor, type 2, member 6, pseudogene" Taste 2 receptors 1162 2003-03-12 2014-03-19 2015-12-16 2015-12-16 448990 ENSG00000270923 OTTHUMG00000184995 AX097706 NG_004700 +HGNC:14913 TAS2R7 taste 2 receptor member 7 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R7|TRB4" taste receptor, type 2, member 7 Taste 2 receptors 1162 2001-03-21 2015-12-16 2016-10-05 50837 ENSG00000121377 OTTHUMG00000168505 uc001qyv.3 AF227133 NM_023919 CCDS8631 Q9NYW3 "10761934|10766242" MGI:2681278 RGD:1597354 TAS2R7 604793 objectId:663 +HGNC:14915 TAS2R8 taste 2 receptor member 8 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R8|TRB5" taste receptor, type 2, member 8 Taste 2 receptors 1162 2001-03-21 2015-12-16 2016-10-05 50836 ENSG00000121314 OTTHUMG00000168506 uc010shh.3 AF227134 NM_023918 CCDS8632 Q9NYW2 "10761934|10766242" TAS2R8 604794 objectId:664 +HGNC:14917 TAS2R9 taste 2 receptor member 9 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R9|TRB6" taste receptor, type 2, member 9 Taste 2 receptors 1162 2001-03-21 2015-12-16 2016-10-05 50835 ENSG00000121381 OTTHUMG00000168507 uc001qyx.4 AF227135 NM_023917 CCDS8633 Q9NYW1 "10761934|10766242" TAS2R9 604795 objectId:665 +HGNC:14918 TAS2R10 taste 2 receptor member 10 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R10|TRB2" taste receptor, type 2, member 10 Taste 2 receptors 1162 2001-03-21 2015-12-16 2016-10-05 50839 ENSG00000121318 OTTHUMG00000168508 uc001qyy.2 AF227136 NM_023921 CCDS8634 Q9NYW0 "10761934|10766242" MGI:2681218 RGD:620736 TAS2R10 604791 objectId:666 +HGNC:19103 TAS2R12P taste 2 receptor member 12 pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 T2R12 TAS2R12 "taste receptor, type 2, member 12|taste receptor, type 2, member 12 pseudogene|taste receptor, type 2, member 12, pseudogene" Taste 2 receptors 1162 2002-09-26 2012-04-27 2015-12-16 2015-12-16 266656 AX097717 NG_005300 PGOHUM00000239335 +HGNC:14919 TAS2R13 taste 2 receptor member 13 protein-coding gene gene with protein product Approved 12p13 12p13 "T2R13|TRB3" taste receptor, type 2, member 13 Taste 2 receptors 1162 2001-03-21 2015-12-16 2015-12-16 50838 ENSG00000212128 OTTHUMG00000168555 uc001qzg.1 AF227137 NM_023920 CCDS8635 Q9NYV9 "10761934|10766242" MGI:2681259 RGD:620738 TAS2R13 604792 objectId:667 +HGNC:14920 TAS2R14 taste 2 receptor member 14 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R14|TRB1" taste receptor, type 2, member 14 Taste 2 receptors 1162 2001-03-21 2015-12-16 2016-10-05 50840 ENSG00000212127 OTTHUMG00000162720 uc010shi.3 AF227138 NM_023922 CCDS8637 Q9NYV8 "10761934|10766242" MGI:2681298 TAS2R14 604790 objectId:668 +HGNC:19106 TAS2R15P taste 2 receptor member 15 pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 "T2R15|PS8" TAS2R15 "taste receptor, type 2, member 15|taste receptor, type 2, member 15 pseudogene|taste receptor, type 2, member 15, pseudogene" Taste 2 receptors 1162 2002-09-26 2014-03-19 2015-12-16 2015-12-16 266657 ENSG00000212125 OTTHUMG00000169063 AX097723 NG_002788 PGOHUM00000239336 +HGNC:14921 TAS2R16 taste 2 receptor member 16 protein-coding gene gene with protein product Approved 7q31.32 07q31.32 T2R16 taste receptor, type 2, member 16 Taste 2 receptors 1162 2001-03-16 2015-12-16 2016-10-05 50833 ENSG00000128519 OTTHUMG00000157090 uc003vkl.2 AF227139 NM_016945 CCDS5785 Q9NYV7 10761934 MGI:2681247 RGD:620735 TAS2R16 604867 objectId:669 +HGNC:19107 TAS2R18P taste 2 receptor member 18 pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 "T2R18|TAS2R65" "TAS2R65P|TAS2R18" "taste receptor, type 2, member 65 pseudogene|taste receptor, type 2, member 18|taste receptor, type 2, member 18 pseudogene|taste receptor, type 2, member 18, pseudogene" Taste 2 receptors 1162 2002-09-26 2014-03-19 2015-12-16 2015-12-16 338414 "AX097728|AY114099" NG_002676 PGOHUM00000239345 +HGNC:19108 TAS2R19 taste 2 receptor member 19 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R19|T2R23" "TAS2R48|TAS2R23" "taste receptor, type 2, member 48|taste receptor, type 2, member 23|taste receptor, type 2, member 19" Taste 2 receptors 1162 2002-09-26 2015-12-16 2015-12-16 259294 ENSG00000212124 OTTHUMG00000162687 uc010shj.3 "AX097730|AF494234" NM_176888 CCDS8640 P59542 TAS2R19 613961 objectId:670 +HGNC:19109 TAS2R20 taste 2 receptor member 20 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R20|T2R56" TAS2R49 "taste receptor, type 2, member 49|taste receptor, type 2, member 20" Taste 2 receptors 1162 2002-09-26 2015-12-16 2015-12-16 259295 ENSG00000255837 OTTHUMG00000162695 uc001qzm.3 "AX097732|AF494236" NM_176889 CCDS8639 P59543 RGD:1596060 TAS2R20 613962 objectId:671 +HGNC:19110 TAS2R22 taste 2 receptor member 22 other unknown Approved 12 12 T2R22 taste receptor, type 2, member 22 Taste 2 receptors 1162 2002-09-26 2015-12-16 2015-12-16 266661 AX097735 +HGNC:19112 TAS2R30 taste 2 receptor member 30 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 T2R30 TAS2R47 "taste receptor, type 2, member 47|taste receptor, type 2, member 30" Taste 2 receptors 1162 2002-09-26 2015-12-16 2015-12-16 259293 ENSG00000256188 OTTHUMG00000168562 uc009zhs.2 "AX097746|AF494233" NM_001097643 CCDS53750 P59541 TAS2R30 613963 objectId:673 +HGNC:19113 TAS2R31 taste 2 receptor member 31 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R31|T2R53" TAS2R44 "taste receptor, type 2, member 44|taste receptor, type 2, member 31" Taste 2 receptors 1162 2002-09-26 2015-12-16 2015-12-16 259290 ENSG00000256436 OTTHUMG00000168558 uc001qzo.1 "AX097748|AF494228" NM_176885 CCDS53747 P59538 MGI:2681304 RGD:2314262 TAS2R31 612669 objectId:674 +HGNC:19114 TAS2R33 taste 2 receptor member 33 other unknown Approved 12 12 T2R33 taste receptor, type 2, member 33 Taste 2 receptors 1162 2002-09-26 2015-12-16 2015-12-16 266665 AX097751 +HGNC:19115 TAS2R36 taste 2 receptor member 36 other unknown Approved 12 12 T2R36 taste receptor, type 2, member 36 Taste 2 receptors 1162 2002-09-26 2015-12-16 2015-12-16 266666 AX097755 +HGNC:19116 TAS2R37 taste 2 receptor member 37 other unknown Approved 12 12 T2R37 taste receptor, type 2, member 37 Taste 2 receptors 1162 2002-09-26 2015-12-16 2015-12-16 266667 AX097757 +HGNC:9584 TAS2R38 taste 2 receptor member 38 protein-coding gene gene with protein product Approved 7q34 07q34 T2R61 PTC "phenylthiocarbamide tasting|taste receptor, type 2, member 38" Taste 2 receptors 1162 2001-06-22 2003-05-30 2015-12-16 2015-12-16 5726 ENSG00000257138 OTTHUMG00000158374 uc003vwx.1 AF494231 NM_176817 CCDS34765 P59533 "12624758|12584440" MGI:2681306 RGD:1560649 TAS2R38 607751 objectId:682 +HGNC:18886 TAS2R39 taste 2 receptor member 39 protein-coding gene gene with protein product Approved 7q34 07q34 taste receptor, type 2, member 39 Taste 2 receptors 1162 2002-08-16 2015-12-16 2015-12-16 259285 ENSG00000236398 OTTHUMG00000152636 uc011ksw.2 AF494230 NM_176881 CCDS47729 P59534 12379855 MGI:2681308 RGD:1595436 TAS2R39 objectId:675 +HGNC:18885 TAS2R40 taste 2 receptor member 40 protein-coding gene gene with protein product Approved 7q34 07q34 GPR60 "G protein-coupled receptor 60|taste receptor, type 2, member 40" Taste 2 receptors 1162 2002-08-16 2015-12-16 2015-12-16 259286 ENSG00000221937 OTTHUMG00000152638 uc011ksx.3 AF494229 NM_176882 CCDS43662 P59535 12379855 MGI:2681312 RGD:1562314 TAS2R40 613964 objectId:676 +HGNC:18883 TAS2R41 taste 2 receptor member 41 protein-coding gene gene with protein product Approved 7q35 07q35 T2R59 taste receptor, type 2, member 41 Taste 2 receptors 1162 2002-08-16 2015-12-16 2016-10-05 259287 ENSG00000221855 OTTHUMG00000155892 uc003wdc.1 AF494232 NM_176883 CCDS43663 P59536 12379855 MGI:2681273 RGD:727853 TAS2R41 613965 objectId:680 +HGNC:18888 TAS2R42 taste 2 receptor member 42 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "T2R24|T2R55|hT2R55|TAS2R55" taste receptor, type 2, member 42 Taste 2 receptors 1162 2002-08-16 2015-12-16 2016-10-05 353164 ENSG00000186136 OTTHUMG00000168567 uc031yun.1 "AX097739|AB199241" NM_181429 CCDS31747 Q7RTR8 12679530 MGI:2681280 RGD:2324836 TAS2R42 613966 objectId:672 +HGNC:18875 TAS2R43 taste 2 receptor member 43 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 T2R52 taste receptor, type 2, member 43 Taste 2 receptors 1162 2002-08-16 2015-12-16 2015-12-16 259289 ENSG00000255374 OTTHUMG00000165352 uc001qzq.1 AF494237 NM_176884 CCDS53749 P59537 12379855 TAS2R43 612668 objectId:678 +HGNC:18876 TAS2R45 taste 2 receptor member 45 protein-coding gene gene with protein product Approved 12 alternate reference locus 12 alternate reference locus ZG24P GPR59 "G protein-coupled receptor 59|taste receptor, type 2, member 45" Taste 2 receptors 1162 2002-08-16 2015-12-16 2015-12-16 259291 AF494226 NM_176886 P59539 12379855 613967 objectId:2828 +HGNC:18877 TAS2R46 taste 2 receptor member 46 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 T2R54 taste receptor, type 2, member 46 Taste 2 receptors 1162 2002-08-16 2015-12-16 2015-12-16 259292 ENSG00000226761 OTTHUMG00000165351 uc001qzp.1 AF494227 NM_176887 CCDS53748 P59540 12379855 MGI:2681256 TAS2R46 612774 objectId:679 +HGNC:18882 TAS2R50 taste 2 receptor member 50 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 T2R51 taste receptor, type 2, member 50 Taste 2 receptors 1162 2002-08-16 2015-12-16 2015-12-16 259296 ENSG00000212126 OTTHUMG00000162719 uc001qzl.2 AF494235 NM_176890 CCDS8638 P59544 "12379855|12584440|16175505" TAS2R50 609627 objectId:677 +HGNC:20639 TAS2R60 taste 2 receptor member 60 protein-coding gene gene with protein product Approved 7q35 07q35 T2R60 taste receptor, type 2, member 60 Taste 2 receptors 1162 2003-03-12 2015-12-16 2015-12-16 338398 ENSG00000185899 OTTHUMG00000154891 uc011ktg.2 AY114094 NM_177437 CCDS5885 P59551 12584440 MGI:2681302 RGD:1561078 TAS2R60 613968 objectId:681 +HGNC:20640 TAS2R62P taste 2 receptor member 62 pseudogene pseudogene pseudogene Approved 7q35 07q35 "T2R62|TAS2R62" taste receptor, type 2, member 62, pseudogene Taste 2 receptors 1162 2003-03-12 2015-12-16 2016-10-05 338399 ENSG00000234066 OTTHUMG00000154892 AY114096 NG_002653 12584440 PGOHUM00000233616 +HGNC:20641 TAS2R63P taste 2 receptor member 63 pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 "taste receptor, type 2, member 63 pseudogene|taste receptor, type 2, member 63, pseudogene" Taste 2 receptors 1162 2003-03-14 2015-12-16 2015-12-16 338413 ENSG00000256019 OTTHUMG00000168559 AY114097 NG_002675 12584440 PGOHUM00000239339 +HGNC:20642 TAS2R64P taste 2 receptor member 64 pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 "T2R64|T2R64P" "taste receptor, type 2, member 64 pseudogene|taste receptor, type 2, member 64, pseudogene" Taste 2 receptors 1162 2003-03-14 2015-12-16 2015-12-16 338412 ENSG00000256274 OTTHUMG00000168560 AY114098 NG_002674 12584440 PGOHUM00000239341 +HGNC:43898 TAS2R67P taste 2 receptor member 67 pseudogene pseudogene pseudogene Approved 12p13.2 12p13.2 taste receptor, type 2, member 67 pseudogene Taste 2 receptors 1162 2012-04-27 2015-12-16 2015-12-16 448991 NG_004701 PGOHUM00000291239 +HGNC:43905 TAS2R68P taste 2 receptor member 68 pseudogene pseudogene pseudogene Approved 12 alternate reference locus 12 alternate reference locus "T2R68P|PS7" taste receptor, type 2, member 68 pseudogene Taste 2 receptors 1162 2012-05-01 2015-12-16 2015-12-16 100653053 "AB199304|BK001064|AY724934" NG_004699 "15744053|15496549|12679530" +HGNC:15859 TASP1 taspase 1 protein-coding gene gene with protein product Approved 20p12.1 20p12.1 "FLJ20212|dJ585I14.2" threonine aspartase C20orf13 chromosome 20 open reading frame 13 2001-06-21 2005-10-15 2015-11-13 2016-10-05 55617 ENSG00000089123 OTTHUMG00000031904 uc002woi.4 AK000219 NM_017714 CCDS13116 Q9H6P5 "14636557|27308523" MGI:1923062 RGD:1308591 TASP1 608270 T02.004 objectId:2419 3.4.25.- +HGNC:11573 TAT tyrosine aminotransferase protein-coding gene gene with protein product Approved 16q22.2 16q22.2 2001-06-22 2016-10-05 6898 ENSG00000198650 OTTHUMG00000137590 uc002fap.3 NM_000353 CCDS10903 P17735 MGI:98487 RGD:3820 TAT 613018 119928 objectId:2527 2.6.1.5 +HGNC:51369 TAT-AS1 TAT antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16q22.2 16q22.2 2014-10-16 2014-10-16 100132529 ENSG00000260886 OTTHUMG00000176800 "HY017421|BU568247|BM853033" NR_103851 +HGNC:24220 TATDN1 TatD DNase domain containing 1 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 CDA11 2004-06-07 2004-06-07 83940 ENSG00000147687 OTTHUMG00000165068 uc003yrd.4 AF212250 NM_032026 "CCDS6351|CCDS55273|CCDS83323" Q6P1N9 12477932 MGI:1916944 RGD:1585145 TATDN1 +HGNC:45058 TATDN1P1 TatD DNase domain containing 1 pseudogene 1 pseudogene pseudogene Approved 10q21.3 10q21.3 2013-02-07 2013-02-07 728737 ENSG00000234369 OTTHUMG00000018312 NG_011726 PGOHUM00000238810 +HGNC:28988 TATDN2 TatD DNase domain containing 2 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 KIAA0218 2004-06-07 2015-08-26 9797 ENSG00000157014 OTTHUMG00000155361 uc011atr.3 D86972 XM_376203 CCDS33698 Q93075 9039502 MGI:3576210 RGD:1586017 TATDN2 +HGNC:39254 TATDN2P1 TatD DNase domain containing 2 pseudogene 1 pseudogene pseudogene Approved Xp11.3 Xp11.3 2010-11-24 2010-11-24 100131103 ENSG00000198414 OTTHUMG00000021392 NG_011742 PGOHUM00000241726 +HGNC:39255 TATDN2P2 TatD DNase domain containing 2 pseudogene 2 pseudogene pseudogene Approved 6q25.3 06q25.3 2010-11-24 2010-11-24 100272205 ENSG00000218226 OTTHUMG00000015912 NG_011739 PGOHUM00000243432 +HGNC:39256 TATDN2P3 TatD DNase domain containing 2 pseudogene 3 pseudogene pseudogene Approved 13q12.12 13q12.12 2010-11-24 2010-11-24 100420458 ENSG00000235205 OTTHUMG00000016560 NG_024898 PGOHUM00000248529 +HGNC:27010 TATDN3 TatD DNase domain containing 3 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 2005-07-14 2014-11-19 128387 ENSG00000203705 OTTHUMG00000036805 uc001hjo.3 AL832248 XM_375838 "CCDS31019|CCDS41465|CCDS53475|CCDS53476|CCDS53477" Q17R31 MGI:1916222 RGD:1589779 TATDN3 +HGNC:11575 TAX1BP1 Tax1 binding protein 1 protein-coding gene gene with protein product Approved 7p15.2 07p15.2 "TXBP151|CALCOCO3" Tax1 (human T-cell leukemia virus type I) binding protein 1 1999-06-10 2016-03-15 2016-10-05 8887 ENSG00000106052 OTTHUMG00000023377 uc003szl.4 U33821 NM_006024 "CCDS5415|CCDS43561|CCDS56471" Q86VP1 10435631 MGI:1289308 RGD:708579 TAX1BP1 605326 +HGNC:30684 TAX1BP3 Tax1 binding protein 3 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 TIP-1 Tax interaction protein 1 Tax1 (human T-cell leukemia virus type I) binding protein 3 PDZ domain containing 1220 2004-06-15 2016-02-17 2016-10-05 30851 ENSG00000213977 OTTHUMG00000090701 uc002fwc.4 AF028823 NM_014604 "CCDS11032|CCDS73940" O14907 "8619474|10673275" MGI:1923531 RGD:1308924 TAX1BP3 616484 +HGNC:11577 TAZ tafazzin protein-coding gene gene with protein product Approved Xq28 Xq28 "BTHS|XAP-2|G4.5|TAZ1" Barth syndrome "CMD3A|EFE2|EFE" "endocardial fibroelastosis 2|cardiomyopathy, dilated 3A (X-linked)" 1989-05-29 2008-07-29 2016-10-12 6901 ENSG00000102125 OTTHUMG00000033190 uc033fbp.2 X92762 XM_017029761 "CCDS14748|CCDS14749|CCDS14750|CCDS35450" Q16635 8042670 MGI:109626 RGD:1588532 "TAZbase: Mutation registry for Barth syndrome|http://structure.bmc.lu.se/idbase/TAZbase/|LRG_131|http://www.lrg-sequence.org/LRG/LRG_131" TAZ 300394 119930 +HGNC:23511 TBATA thymus, brain and testes associated protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "FLJ32820|spatial" C10orf27 chromosome 10 open reading frame 27 2003-11-21 2012-05-23 2012-05-23 2016-10-05 219793 ENSG00000166220 OTTHUMG00000018413 uc001jrj.1 AK057382 NM_152710 "CCDS7308|CCDS81471" Q96M53 20937703 MGI:1923820 RGD:1561665 TBATA 612640 +HGNC:11578 TBC1D1 TBC1 domain family member 1 protein-coding gene gene with protein product Approved 4p14 04p14 "TBC|TBC1|KIAA1108" "TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1|TBC1 domain family, member 1" 2000-03-06 2015-11-18 2015-11-18 23216 ENSG00000065882 OTTHUMG00000150302 uc003gtb.4 AB029031 NM_015173 "CCDS33972|CCDS58897" Q86TI0 "10965142|18258599" MGI:1889508 RGD:1304562 TBC1D1 609850 +HGNC:18026 TBC1D2 TBC1 domain family member 2 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "PARIS1|TBC1D2A|Armus" prostate antigen recognized and identified by SEREX TBC1 domain family, member 2 2002-02-15 2015-11-18 2016-10-05 55357 ENSG00000095383 OTTHUMG00000020343 uc011lvb.3 AY026527 NM_018421 "CCDS35080|CCDS59137|CCDS75865" Q9BYX2 MGI:2652885 RGD:1306860 TBC1D2 609871 +HGNC:29183 TBC1D2B TBC1 domain family member 2B protein-coding gene gene with protein product Approved 15q24.3-q25.1 15q24.3-q25.1 KIAA1055 TBC1 domain family, member 2B 2005-11-29 2015-11-18 2016-10-11 23102 ENSG00000167202 OTTHUMG00000152885 uc010bla.4 AB028978 NM_015079 "CCDS32301|CCDS45314" Q9UPU7 10470851 MGI:1914266 RGD:1307436 TBC1D2B +HGNC:19031 TBC1D3 TBC1 domain family member 3 protein-coding gene gene with protein product Approved 17q12 17q12 "TBC1D3A|DKFZp434P2235|PRC17" prostate cancer gene 17 TBC1 domain family, member 3 2003-05-29 2015-11-18 2015-11-18 729873 ENSG00000274611 OTTHUMG00000188487 uc032fha.2 NM_001123391 CCDS45658 Q8IZP1 "12604796|12359748|16863688" TBC1D3 607741 +HGNC:27011 TBC1D3B TBC1 domain family member 3B protein-coding gene gene with protein product Approved 17q12 17q12 PRC17 TBC1D3I "TBC1 domain family, member 3I|TBC1 domain family, member 3B" 2005-04-28 2015-11-18 2015-11-18 414059 ENSG00000274808 OTTHUMG00000188417 uc060efr.1 AF540953 NM_001001417 CCDS42300 A6NDS4 "12359748|16863688" TBC1D3B 610144 +HGNC:24889 TBC1D3C TBC1 domain family member 3C protein-coding gene gene with protein product Approved 17q12 17q12 MGC44903 TBC1 domain family, member 3C 2005-04-28 2015-11-18 2015-11-18 414060 ENSG00000278299 OTTHUMG00000188484 uc032ffp.2 BC033670 NM_001001418 CCDS74045 Q6IPX1 "12359748|16863688" TBC1D3C 610806 +HGNC:28944 TBC1D3D TBC1 domain family member 3D protein-coding gene gene with protein product Approved 17q12 17q12 TBC1 domain family, member 3D 2006-05-02 2015-11-18 2015-11-18 101060389 ENSG00000274419 OTTHUMG00000188483 NM_001291465 CCDS74044 A0A087WVF3 16863688 +HGNC:27071 TBC1D3E TBC1 domain family member 3E protein-coding gene gene with protein product Approved 17q12 17q12 TBC1 domain family, member 3E 2006-05-02 2015-11-18 2015-11-18 102723859 ENSG00000278599 OTTHUMG00000188486 NM_001291466 CCDS77009 A0A087X179 16863688 TBC1D3E 610808 +HGNC:18257 TBC1D3F TBC1 domain family member 3F protein-coding gene gene with protein product Approved 17q12 17q12 TBC1 domain family, member 3F 2006-05-03 2015-11-18 2015-11-18 84218 ENSG00000275954 OTTHUMG00000188428 uc032fdb.2 NM_032258.2 A6NER0 16863688 TBC1D3F 610809 +HGNC:29860 TBC1D3G TBC1 domain family member 3G protein-coding gene gene with protein product Approved 17q12 17q12 TBC1 domain family, member 3G 2006-05-02 2015-11-18 2015-11-18 101060321 ENSG00000260287 OTTHUMG00000188426 uc032fcb.2 NM_001291462 CCDS74040 Q6DHY5 16863688 TBC1D3G 610810 +HGNC:30708 TBC1D3H TBC1 domain family member 3H protein-coding gene gene with protein product Approved 17q12 17q12 TBC1 domain family, member 3H 2006-05-02 2015-11-18 2015-11-18 729877 ENSG00000274226 OTTHUMG00000188427 uc002hmc.5 NM_001159332 CCDS45653 P0C7X1 16863688 TBC1D3H 610811 +HGNC:32709 TBC1D3I TBC1 domain family member 3I protein-coding gene gene with protein product Approved 17q12 17q12 TBC1 domain family, member 3I 2006-05-03 2015-11-18 2015-11-18 102724862 ENSG00000274933 OTTHUMG00000188424 NM_001291463 CCDS74039 A0A087WXS9 +HGNC:51247 TBC1D3J TBC1 domain family member 3J other unknown Approved 17q12 17q12 TBC1 domain family, member 3J 2014-10-08 2015-11-18 2015-11-18 100510707 ENSG00000274658 OTTHUMG00000188429 XM_017025494 +HGNC:51245 TBC1D3K TBC1 domain family member 3K protein-coding gene gene with protein product Approved 17q12 17q12 TBC1 domain family, member 3K 2014-10-08 2015-11-18 2015-11-18 101060351 ENSG00000273513 OTTHUMG00000188481 XM_006722236 CCDS74042 A0A087X1G2 +HGNC:51246 TBC1D3L TBC1 domain family member 3L protein-coding gene gene with protein product Approved 17q12 17q12 TBC1 domain family, member 3L 2014-10-08 2015-11-18 2015-11-18 101060376 ENSG00000274512 OTTHUMG00000188482 XM_006722242 CCDS74043 B9A6J9 +HGNC:27445 TBC1D3P1 TBC1 domain family member 3 pseudogene 1 pseudogene pseudogene Approved 17q23.1 17q23.1 TBC1 domain family, member 3 pseudogene 1 2006-05-02 2015-11-18 2015-11-18 400609 ENSG00000238283 OTTHUMG00000179980 NG_005461 PGOHUM00000294166 +HGNC:42362 TBC1D3P1-DHX40P1 TBC1D3P1-DHX40P1 readthrough, transcribed pseudogene other readthrough Approved 17q23.1 17q23.1 TBC1D3P1-DHX40P1 readthrough (non-protein coding) 2011-07-06 2016-02-03 2016-02-03 653645 ENSG00000267104 OTTHUMG00000179977 uc002iyf.3 NR_002924 +HGNC:27783 TBC1D3P2 TBC1 domain family member 3 pseudogene 2 pseudogene pseudogene Approved 17q23.2 17q23.2 TBC1 domain family, member 3 pseudogene 2 2006-05-02 2015-11-18 2015-11-18 440452 ENSG00000188755 OTTHUMG00000179160 NR_027486 TBC1D3P2 PGOHUM00000294180 +HGNC:32408 TBC1D3P3 TBC1 domain family member 3 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 USP6P1 "ubiquitin specific peptidase 6 pseudogene 1|TBC1 domain family, member 3 pseudogene 3" 2005-12-15 2011-11-08 2015-11-18 2015-11-18 653017 ENSG00000235203 OTTHUMG00000130732 NG_032193 PGOHUM00000256804 +HGNC:32409 TBC1D3P4 TBC1 domain family member 3 pseudogene 4 pseudogene pseudogene Approved 17p11.2 17p11.2 USP6P2 "ubiquitin specific peptidase 6 pseudogene 2|TBC1 domain family, member 3 pseudogene 4" 2005-12-15 2011-11-08 2015-11-18 2015-11-18 100631253 ENSG00000204471 OTTHUMG00000059093 NG_029286 PGOHUM00000263426 +HGNC:43567 TBC1D3P5 TBC1 domain family member 3 pseudogene 5 pseudogene pseudogene Approved 17q11.2 17q11.2 TBC1 domain family, member 3 pseudogene 5 2011-11-08 2015-11-18 2016-10-05 440419 ENSG00000266433 OTTHUMG00000179156 NR_033892 +HGNC:43568 TBC1D3P6 TBC1 domain family member 3 pseudogene 6 pseudogene pseudogene Approved 1p36.13 01p36.13 TBC1 domain family, member 3 pseudogene 6 2011-11-08 2015-11-18 2015-11-18 101928566 ENSG00000224966 OTTHUMG00000009379 PGOHUM00000296229 +HGNC:43569 TBC1D3P7 TBC1 domain family member 3 pseudogene 7 pseudogene pseudogene Approved 17q21.2 17q21.2 TBC1 domain family, member 3 pseudogene 7 2011-11-08 2015-11-18 2015-11-18 106480773 ENSG00000233014 OTTHUMG00000133669 NG_045655 +HGNC:19165 TBC1D4 TBC1 domain family member 4 protein-coding gene gene with protein product Approved 13q22.2 13q22.2 "KIAA0603|AS160|DKFZp779C0666" Akt substrate of 160 kDa TBC1 domain family, member 4 2002-08-29 2015-11-18 2015-11-18 9882 ENSG00000136111 OTTHUMG00000017088 uc001vjl.3 AB011175 NM_014832 "CCDS41901|CCDS66563|CCDS66564" O60343 "11829485|11994271|15304337" MGI:2429660 RGD:1561609 TBC1D4 612465 +HGNC:40874 TBC1D4-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:19166 TBC1D5 TBC1 domain family member 5 protein-coding gene gene with protein product Approved 3p24.3 03p24.3 KIAA0210 TBC1 domain family, member 5 2002-08-29 2015-11-18 2015-11-18 9779 ENSG00000131374 OTTHUMG00000155488 uc003cbf.3 D86965 NM_014744 "CCDS33714|CCDS46770" Q92609 19531583 MGI:1919488 RGD:1561626 TBC1D5 615740 +HGNC:21066 TBC1D7 TBC1 domain family member 7 protein-coding gene gene with protein product Approved 6p24.1 06p24.1 "dJ257A7.3|FLJ32666" TS complex subunit 3 TBC1 domain family, member 7 2003-05-14 2015-11-18 2016-10-05 51256 ENSG00000145979 OTTHUMG00000014272 uc063lxp.1 AF151073 NM_016495 "CCDS4523|CCDS47376|CCDS58995|CCDS83062" Q9P0N9 "11042152|17646400|26893383" MGI:1914296 RGD:1307661 TBC1D7 612655 371601 +HGNC:17791 TBC1D8 TBC1 domain family member 8 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "HBLP1|VRP|AD3|GRAMD8" "BUB2-like protein 1|vascular Rab-GAP/TBC-containing protein" TBC1 domain family, member 8 (with GRAM domain) GRAM domain containing 1146 2003-05-19 2015-11-17 2016-10-05 11138 ENSG00000204634 OTTHUMG00000153040 uc010fiv.4 AB024057 NM_007063 "CCDS46375|CCDS82486" O95759 10373574 MGI:1927225 RGD:1595491 TBC1D8 +HGNC:24715 TBC1D8B TBC1 domain family member 8B protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "FLJ20298|RP11-321G1.1|GRAMD8B" TBC1 domain family, member 8B (with GRAM domain) "EF-hand domain containing|GRAM domain containing" "863|1146" 2006-07-12 2015-11-17 2015-11-17 54885 ENSG00000133138 OTTHUMG00000022152 uc004emo.4 AK123957 NM_017752 "CCDS14522|CCDS14523" Q0IIM8 8889548 MGI:1918101 RGD:1563084 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TBC1D8B TBC1D8B +HGNC:21710 TBC1D9 TBC1 domain family member 9 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "KIAA0882|MDR1|GRAMD9" TBC1 domain family, member 9 (with GRAM domain) "EF-hand domain containing|GRAM domain containing" "863|1146" 2006-01-17 2015-11-17 2016-10-05 23158 ENSG00000109436 OTTHUMG00000161405 uc010ioj.4 AB020689 NM_015130 CCDS47136 Q6ZT07 12970790 MGI:1918560 RGD:1308221 TBC1D9 +HGNC:29097 TBC1D9B TBC1 domain family member 9B protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "KIAA0676|GRAMD9B" TBC1 domain family, member 9B (with GRAM domain) "EF-hand domain containing|GRAM domain containing" "863|1146" 2006-07-12 2015-11-17 2015-11-17 23061 ENSG00000197226 OTTHUMG00000130911 uc003mli.4 AB014576 NM_015043 "CCDS4450|CCDS43408" Q66K14 9734811 MGI:1924045 RGD:1310147 TBC1D9B +HGNC:23609 TBC1D10A TBC1 domain family member 10A protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "EPI64|AC004997.C22.2" EBP50-PDZ interactor of 64 kD TBC1D10 "TBC1 domain family, member 10|TBC1 domain family, member 10A" 2004-01-05 2005-03-10 2015-11-18 2015-11-18 83874 ENSG00000099992 OTTHUMG00000150924 uc003ahk.5 AF331038 NM_031937 "CCDS13874|CCDS56227" Q9BXI6 "11285285|20404108" MGI:2144164 RGD:1311641 TBC1D10A 610020 +HGNC:24510 TBC1D10B TBC1 domain family member 10B protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "DKFZP434P1750|Rab27A-GAPbeta|FLJ13130|EPI64B" TBC1 domain family, member 10B 2005-03-10 2015-11-18 2015-11-18 26000 ENSG00000169221 OTTHUMG00000132396 uc002dxu.3 BC063112 NM_015527 CCDS10676 Q4KMP7 20404108 MGI:1915699 RGD:1309191 TBC1D10B 613620 +HGNC:24702 TBC1D10C TBC1 domain family member 10C protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "FLJ00332|Carabin|EPI64C" TBC1 domain family, member 10C 2005-03-10 2015-11-18 2016-10-05 374403 ENSG00000175463 OTTHUMG00000167139 uc058eft.1 BC035630 NM_198517 "CCDS8162|CCDS58150" Q8IV04 "17230191|20404108" MGI:1922072 RGD:1311490 TBC1D10C 610831 +HGNC:29082 TBC1D12 TBC1 domain family member 12 protein-coding gene gene with protein product Approved 10q23.33 10q23.33 KIAA0608 TBC1 domain family, member 12 2004-05-27 2015-11-18 2015-11-18 23232 ENSG00000108239 OTTHUMG00000018794 uc001kjr.3 AB011180 XM_006717732 CCDS41553 O60347 9628581 MGI:2384803 RGD:9377071 TBC1D12 +HGNC:25571 TBC1D13 TBC1 domain family member 13 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 FLJ10743 TBC1 domain family, member 13 2004-01-06 2015-11-18 2016-10-05 54662 ENSG00000107021 OTTHUMG00000020760 uc010myj.5 AK001605 NM_018201 "CCDS6911|CCDS69677" Q9NVG8 22762500 MGI:2385326 RGD:1591937 TBC1D13 616218 +HGNC:29246 TBC1D14 TBC1 domain family member 14 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 KIAA1322 TBC1 domain family, member 14 2004-01-30 2015-11-18 2016-02-22 57533 ENSG00000132405 OTTHUMG00000090493 uc011bwg.2 AL833868 NM_020773 "CCDS3394|CCDS47006|CCDS75104|CCDS82909" Q9P2M4 "10718198|26711178" MGI:1098708 RGD:1309993 TBC1D14 614855 +HGNC:25694 TBC1D15 TBC1 domain family member 15 protein-coding gene gene with protein product Approved 12q21.1 12q21.1 "FLJ12085|DKFZp761D0223" TBC1 domain family, member 15 2004-02-04 2015-11-18 2016-10-05 64786 ENSG00000121749 OTTHUMG00000158553 uc001swv.4 AL157464 NM_022771 "CCDS31858|CCDS53814|CCDS55849" Q8TC07 16055087 MGI:1913937 RGD:1307920 TBC1D15 612662 +HGNC:28356 TBC1D16 TBC1 domain family member 16 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "MGC25062|FLJ20748" TBC1 domain family, member 16 2004-02-04 2015-11-18 2015-11-18 125058 ENSG00000167291 OTTHUMG00000177489 uc002jxj.5 AL157485 NM_019020 "CCDS11766|CCDS62351|CCDS62352|CCDS62353" Q8TBP0 23019362 MGI:2652878 RGD:1588560 TBC1D16 616637 +HGNC:25699 TBC1D17 TBC1 domain family member 17 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 FLJ12168 TBC1 domain family, member 17 2004-02-04 2015-11-18 2015-11-18 79735 ENSG00000104946 OTTHUMG00000183376 uc002pqo.4 AK090606 NM_024682 "CCDS12785|CCDS54294" Q9HA65 22854040 MGI:2449973 RGD:1309686 TBC1D17 616659 +HGNC:25624 TBC1D19 TBC1 domain family member 19 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 FLJ11082 TBC1 domain family, member 19 2005-01-05 2015-11-18 2015-11-18 55296 ENSG00000109680 OTTHUMG00000097797 uc003gsf.5 AK001944 NM_018317 "CCDS3439|CCDS75115" Q8N5T2 MGI:1914499 RGD:1304958 TBC1D19 +HGNC:16133 TBC1D20 TBC1 domain family member 20 protein-coding gene gene with protein product Approved 20p13 20p13 dJ852M4.2 C20orf140 "chromosome 20 open reading frame 140|TBC1 domain family, member 20" 2001-07-17 2005-01-05 2015-11-18 2015-11-18 128637 ENSG00000125875 OTTHUMG00000031637 uc002wds.4 AK055573 NM_144628 CCDS13002 Q96BZ9 17901050 MGI:1914481 RGD:1303293 TBC1D20 611663 376959 +HGNC:28536 TBC1D21 TBC1 domain family member 21 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "MGC34741|MgcRabGAP" male germ cell-specific expressed, containing a RabGAP domain TBC1 domain family, member 21 2005-01-05 2015-11-18 2016-10-05 161514 ENSG00000167139 OTTHUMG00000137594 uc002avz.5 BC033516 NM_153356 "CCDS10252|CCDS66822" Q8IYX1 21128978 MGI:1921536 RGD:1310243 TBC1D21 +HGNC:1309 TBC1D22A TBC1 domain family member 22A protein-coding gene gene with protein product Approved 22q13.31 22q13.31 C22orf4 "chromosome 22 open reading frame 4|TBC1 domain family, member 22A" 2000-03-29 2005-01-05 2015-11-18 2016-10-05 25771 ENSG00000054611 OTTHUMG00000150332 uc003bib.5 AK125705 NM_014346 "CCDS14078|CCDS63511|CCDS63512|CCDS74877" Q8WUA7 MGI:1289265 RGD:1306588 TBC1D22A 616879 +HGNC:51221 TBC1D22A-AS1 TBC1D22A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q13.31 22q13.31 2014-08-08 2014-08-08 642757 AK057318 NR_122047 +HGNC:21602 TBC1D22B TBC1 domain family member 22B protein-coding gene gene with protein product Approved 6p21.2 06p21.2 "FLJ20337|dJ744I24.2" C6orf197 "chromosome 6 open reading frame 197|TBC1 domain family, member 22B" 2003-06-25 2005-01-05 2015-11-18 2015-11-18 55633 ENSG00000065491 OTTHUMG00000014619 uc003onn.3 AK096340 NM_017772 CCDS4832 Q9NU19 MGI:2681867 RGD:1564987 TBC1D22B 616880 +HGNC:25622 TBC1D23 TBC1 domain family member 23 protein-coding gene gene with protein product Approved 3q12.1-q12.2 03q12.1-q12.2 FLJ11046 TBC1 domain family, member 23 2006-01-06 2015-11-18 2016-10-11 55773 ENSG00000036054 OTTHUMG00000159067 uc003dts.5 AK001908 NM_018309 "CCDS2936|CCDS56265" Q9NUY8 22312129 MGI:1914831 RGD:1307925 TBC1D23 +HGNC:29203 TBC1D24 TBC1 domain family member 24 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "KIAA1171|TLDC6|DFNA65" "TBC/LysM-associated domain containing 6|skywalker homolog (Drosophila)" DFNB86 "deafness, autosomal recessive 86|TBC1 domain family, member 24" 2006-04-07 2015-11-18 2015-11-18 57465 ENSG00000162065 OTTHUMG00000177150 uc002cqk.4 AB032997 NM_020705 "CCDS42107|CCDS55980" Q9ULP9 "10574461|24387994|24729539" MGI:2443456 RGD:1306143 TBC1D24 613577 239943 +HGNC:8092 TBC1D25 TBC1 domain family member 25 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 OATL1 "ornithine aminotransferase-like 1|TBC1 domain family, member 25" 1991-06-06 2007-01-12 2015-11-18 2015-11-18 4943 ENSG00000068354 OTTHUMG00000024123 uc004dka.2 L08240 NM_002536 CCDS35242 Q3MII6 21383079 MGI:2444862 RGD:1559711 TBC1D25 311240 +HGNC:28745 TBC1D26 TBC1 domain family member 26 protein-coding gene gene with protein product Approved 17p12 17p12 MGC51025 TBC1 domain family, member 26 2008-01-22 2015-11-18 2016-10-05 353149 ENSG00000214946 OTTHUMG00000059071 uc060bom.1 NM_178571 CCDS42265 Q86UD7 11347906 TBC1D26 +HGNC:28104 TBC1D27 TBC1 domain family member 27 other unknown Approved 17p11.2 17p11.2 TBC1 domain family, member 27 2008-01-22 2015-11-18 2015-11-18 96597 ENSG00000128438 OTTHUMG00000059260 AK024458 XM_002343481 +HGNC:26858 TBC1D28 TBC1 domain family member 28 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 FLJ40244 TBC1 domain family, member 28 2008-01-22 2015-11-18 2015-11-18 254272 ENSG00000189375 OTTHUMG00000059054 uc002gud.2 NM_001039397 CCDS42273 Q2M2D7 TBC1D28 +HGNC:24509 TBC1D29 TBC1 domain family member 29 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 DKFZP434O047 TBC1 domain family, member 29 2008-01-22 2015-11-18 2015-11-18 26083 ENSG00000266733 OTTHUMG00000178857 uc002hfh.4 BC096718 NM_015594 CCDS32606 Q9UFV1 12618308 TBC1D29 +HGNC:29164 TBC1D30 TBC1 domain family member 30 protein-coding gene gene with protein product Approved 12q14.3 12q14.3 KIAA0984 TBC1 domain family, member 30 2008-01-22 2015-11-18 2015-11-18 23329 ENSG00000111490 OTTHUMG00000168824 uc010sst.3 AB023201 XM_037557 "CCDS53813|CCDS81708" Q9Y2I9 "12618308|17646400" MGI:1921944 RGD:1305255 TBC1D30 615077 +HGNC:30888 TBC1D31 TBC1 domain family member 31 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "MGC21654|Gm85" WDR67 "WD repeat domain 67|TBC1 domain family, member 31" WD repeat domain containing 362 2005-05-26 2013-07-10 2015-11-18 2015-11-18 93594 ENSG00000156787 OTTHUMG00000165081 AK094612 NM_145647 "CCDS6338|CCDS47916|CCDS83320" Q96DN5 12477932 MGI:2684931 RGD:1587370 +HGNC:21485 TBC1D32 TBC1 domain family member 32 protein-coding gene gene with protein product Approved 6q22.31 06q22.31 "FLJ30899|dJ310J6.1|FLJ34235|bA57L9.1|BROMI" broad-minded homolog "C6orf171|C6orf170" "chromosome 6 open reading frame 171|chromosome 6 open reading frame 170|TBC1 domain family, member 32" 2003-06-17 2013-07-10 2015-11-18 2015-11-18 221322 ENSG00000146350 OTTHUMG00000015474 AK055461 NM_152730 CCDS43501 Q96NH3 "20159594|24285566" MGI:2442827 RGD:2323599 615867 +HGNC:11579 TBCA tubulin folding cofactor A protein-coding gene gene with protein product Approved 5q14.1 05q14.1 tubulin-specific chaperone a 1998-07-31 2006-11-21 2015-08-26 6902 ENSG00000171530 OTTHUMG00000102173 uc003kfh.2 AF038952 NM_004607 "CCDS4040|CCDS75263|CCDS78024" O75347 "9653160|8706133" MGI:107549 RGD:1311538 TBCA 610058 +HGNC:42630 TBCAP1 tubulin folding cofactor A pseudogene 1 pseudogene pseudogene Approved Xp21.1 Xp21.1 2011-08-10 2011-08-10 494540 ENSG00000226781 OTTHUMG00000021335 NG_004790 PGOHUM00000241692 +HGNC:42631 TBCAP2 tubulin folding cofactor A pseudogene 2 pseudogene pseudogene Approved 1p36.21 01p36.21 2011-08-10 2011-08-10 494541 ENSG00000235829 OTTHUMG00000037853 NG_004791 PGOHUM00000256861 +HGNC:42632 TBCAP3 tubulin folding cofactor A pseudogene 3 pseudogene pseudogene Approved 4q23 04q23 2011-08-10 2014-11-18 101290501 ENSG00000249055 OTTHUMG00000161088 NG_033171 +HGNC:1989 TBCB tubulin folding cofactor B protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "CG22|CKAPI" CKAP1 "cytoskeleton-associated protein 1|cytoskeleton associated protein 1" 1995-09-15 2006-11-22 2006-11-22 2016-10-05 1155 ENSG00000105254 OTTHUMG00000048143 uc002odg.2 AF013488 NM_001281 "CCDS12488|CCDS74344" Q99426 8978778 MGI:1913661 RGD:1309965 TBCB 601303 +HGNC:11580 TBCC tubulin folding cofactor C protein-coding gene gene with protein product Approved 6p21.1 06p21.1 CFC tubulin-specific chaperone c 1998-07-31 2006-11-21 2015-08-26 6903 ENSG00000124659 OTTHUMG00000014704 uc003osl.4 U61234 NM_003192 CCDS4872 Q15814 "8706133|11847227" MGI:1919976 RGD:1306756 TBCC 602971 +HGNC:25546 TBCCD1 TBCC domain containing 1 protein-coding gene gene with protein product Approved 3q27.3 03q27.3 FLJ10560 2006-03-02 2014-11-18 55171 ENSG00000113838 OTTHUMG00000156613 uc011bry.3 BC025748 NM_018138 "CCDS3276|CCDS75061" Q9NVR7 12477932 MGI:1917823 RGD:1309604 TBCCD1 +HGNC:11581 TBCD tubulin folding cofactor D protein-coding gene gene with protein product Approved 17q25.3 17q25.3 tubulin-specific chaperone d 1998-07-31 2006-11-21 2015-08-26 6904 ENSG00000141556 OTTHUMG00000177878 uc002kfz.4 BC003094 NM_005993 CCDS45818 Q9BTW9 MGI:1919686 RGD:2320148 TBCD 604649 +HGNC:11582 TBCE tubulin folding cofactor E protein-coding gene gene with protein product Approved 1q42.3 01q42.3 "KCS1|pac2" "KCS|HRD" "tubulin-specific chaperone e|Kenny-Caffey syndrome|hypoparathyroidism, growth and mental retardation, and dysmorphism" 1998-07-31 2006-11-21 2014-11-19 6905 ENSG00000116957 OTTHUMG00000039987 uc001hwz.2 U61232 NM_003193 "CCDS1605|CCDS73052" Q15813 "8706133|9806825|12389028" MGI:1917680 RGD:1305533 TBCE 604934 119938 +HGNC:49387 TBCE-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2015-03-09 +HGNC:28115 TBCEL tubulin folding cofactor E like protein-coding gene gene with protein product Approved 11q23.3 11q23.3 MGC10233 LRRC35 "leucine rich repeat containing 35|tubulin-specific chaperone e-like" 2005-03-13 2006-11-21 2016-06-17 2016-06-17 219899 ENSG00000154114 OTTHUMG00000166061 uc001pxo.4 BC020501 NM_152715 CCDS31692 Q5QJ74 "15728251|24098140" MGI:1925543 RGD:1308880 TBCEL 610451 +HGNC:28261 TBCK TBC1 domain containing kinase protein-coding gene gene with protein product Approved 4q24 04q24 "MGC16169|HSPC302" 2009-08-26 2016-10-12 93627 ENSG00000145348 OTTHUMG00000131214 uc062yuq.1 NM_033115 "CCDS3673|CCDS54788|CCDS54789" Q8TEA7 12471243 MGI:2445052 RGD:1307816 LRG_836|http://www.lrg-sequence.org/LRG/LRG_836 TBCK 616899 objectId:2236 +HGNC:11584 TBK1 TANK binding kinase 1 protein-coding gene gene with protein product Approved 12q14.2 12q14.2 NAK TANK-binding kinase 1 2000-06-08 2016-03-14 2016-03-14 29110 ENSG00000183735 OTTHUMG00000168796 uc001ssc.3 AF191838 NM_013254 CCDS8968 Q9UHD2 "10581243|10783893" MGI:1929658 RGD:1588588 TBK1 604834 318865 objectId:2237 +HGNC:30140 TBKBP1 TBK1 binding protein 1 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "ProSAPiP2|KIAA0775" 2005-12-13 2014-11-19 9755 ENSG00000198933 OTTHUMG00000178286 uc002ilu.4 AB018318 NM_014726 CCDS45722 A7MCY6 "14743216|19481056" MGI:1920424 RGD:631328 TBKBP1 608476 +HGNC:11585 TBL1X transducin beta like 1X-linked protein-coding gene gene with protein product Approved Xp22.31-p22.2 Xp22.31-p22.2 EBI TBL1 "transducin (beta)-like 1|transducin (beta)-like 1X-linked" WD repeat domain containing 362 1997-06-09 2002-05-24 2016-07-27 2016-10-11 6907 ENSG00000101849 OTTHUMG00000021117 uc010ndr.3 Y12781 NM_005647 "CCDS14133|CCDS48078" O60907 10330347 MGI:1336172 RGD:1563868 TBL1X 300196 +HGNC:29529 TBL1XR1 transducin beta like 1 X-linked receptor 1 protein-coding gene gene with protein product Approved 3q26.32 03q26.32 "IRA1|FLJ12894|TBLR1|C21|DC42" transducin (beta)-like 1X-linked receptor 1 WD repeat domain containing 362 2004-08-09 2016-07-27 2016-10-05 79718 ENSG00000177565 OTTHUMG00000157140 uc003fiw.5 AK022956 NM_024665 CCDS46961 Q9BZK7 "11063877|11931768" MGI:2441730 RGD:1560053 TBL1XR1 608628 410642 +HGNC:41243 TBL1XR1-AS1 TBL1XR1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q26.32 03q26.32 TBL1XR1 antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874217 ENSG00000231310 OTTHUMG00000157220 uc062qbv.1 +HGNC:18502 TBL1Y transducin beta like 1, Y-linked protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 TBL1 transducin (beta)-like 1, Y-linked WD repeat domain containing 362 2002-05-22 2016-07-27 2016-07-27 90665 ENSG00000092377 OTTHUMG00000035299 uc004frb.3 AF332220 NM_033284 CCDS14779 Q9BQ87 TBL1Y 400033 +HGNC:23979 TBL1YP1 transducin beta like 1, Y-linked pseudogene 1 pseudogene pseudogene Approved Yq11.223 Yq11.223 transducin (beta)-like 1, Y-linked pseudogene 1 2009-12-17 2016-07-27 2016-07-27 286555 ENSG00000225624 OTTHUMG00000036543 NG_002819 12815422 PGOHUM00000234006 +HGNC:11586 TBL2 transducin beta like 2 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "WS-betaTRP|WBSCR13|DKFZP43N024" Williams-Beuren syndrome chromosome region 13 transducin (beta)-like 2 WD repeat domain containing 362 1999-12-14 2016-07-27 2016-07-27 26608 ENSG00000106638 OTTHUMG00000023427 uc003tyh.5 AF056183 NM_012453 CCDS5551 Q9Y4P3 "9860302|10575226" MGI:1351652 RGD:1595038 TBL2 605842 119944 +HGNC:11587 TBL3 transducin beta like 3 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "SAZD|UTP13" transducin (beta)-like 3 "WD repeat domain containing|UTPB complex" "362|1225" 1999-12-14 2016-03-22 2016-03-22 10607 ENSG00000183751 OTTHUMG00000128710 uc002cnu.2 U02609 NM_006453 CCDS10453 Q12788 8307582 MGI:2384863 RGD:1305142 TBL3 605915 +HGNC:11588 TBP TATA-box binding protein protein-coding gene gene with protein product Approved 6q27 06q27 TFIID "GTF2D1|SCA17" General transcription factors 565 1993-05-26 2015-11-20 2015-11-20 6908 ENSG00000112592 OTTHUMG00000016084 uc011ehf.3 M55654 NM_003194 "CCDS5315|CCDS55077" P20226 "2194289|11448935" MGI:101838 RGD:67398 TBP 600075 119948 +HGNC:11589 TBPL1 TATA-box binding protein like 1 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "TLP|STUD|TRF2|TLF" TBP-like factor TBP-like 1 1999-08-20 2015-11-23 2015-11-23 9519 ENSG00000028839 OTTHUMG00000015609 uc003qel.4 AB020881 XM_017011513 CCDS5168 P62380 "10082669|10220372|15767669" MGI:1339946 RGD:1597456 TBPL1 605521 +HGNC:19841 TBPL2 TATA-box binding protein like 2 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 "TRF3|TBP2" 2003-01-13 2015-11-20 2016-10-05 387332 ENSG00000182521 OTTHUMG00000140313 uc001xby.5 AY457923 NM_199047 CCDS9724 Q6SJ96 14634207 MGI:2684058 RGD:1596837 TBPL2 608964 +HGNC:11590 TBR1 T-box, brain 1 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 T-box, brain, 1 T-boxes 766 1999-12-14 2015-11-19 2015-11-19 10716 ENSG00000136535 OTTHUMG00000153888 uc002ubw.2 U49250 NM_006593 CCDS33310 Q16650 7619531 MGI:107404 RGD:1591773 TBR1 604616 +HGNC:29551 TBRG1 transforming growth factor beta regulator 1 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "FLJ14621|TB-5|NIAM" nuclear interactor of ARF and MDM2 2004-02-23 2014-11-19 84897 ENSG00000154144 OTTHUMG00000153024 uc001qak.5 AK074140 NM_032811 CCDS8448 Q3YBR2 "7654366|17110379" MGI:1100877 RGD:1305123 TBRG1 610614 +HGNC:17443 TBRG4 transforming growth factor beta regulator 4 protein-coding gene gene with protein product Approved 7p13 07p13 "Cpr2|KIAA0948|H_TD2522F11.8|FASTKD4" "FAST kinase domains 4|cell cycle progression 2 protein" 2004-02-23 2014-11-19 9238 ENSG00000136270 OTTHUMG00000129247 uc003tmv.5 AB023165 NM_030900 "CCDS5501|CCDS5502" Q969Z0 9383053 MGI:1100868 RGD:1309737 TBRG4 611325 +HGNC:11592 TBX1 T-box 1 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 CATCH22 VCF velocardiofacial syndrome T-boxes 766 1997-05-15 2016-10-12 6899 ENSG00000184058 OTTHUMG00000150421 uc002zqa.2 AF012131 NM_080647 "CCDS13765|CCDS13766|CCDS13767" O43435 "9268629|23000736" MGI:98493 RGD:1307734 LRG_226|http://www.lrg-sequence.org/LRG/LRG_226 TBX1 602054 119953 +HGNC:11597 TBX2 T-box 2 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 T-boxes 766 1995-05-08 2014-11-19 6909 ENSG00000121068 OTTHUMG00000156986 uc010wox.3 AB209378 NM_005994 CCDS11627 Q13207 8530034 MGI:98494 RGD:1311014 TBX2 600747 269925 +HGNC:50355 TBX2-AS1 TBX2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q23.2 17q23.2 2014-04-17 2014-04-17 103689912 ENSG00000267280 OTTHUMG00000180076 AI927936 NR_125749 +HGNC:11602 TBX3 T-box 3 protein-coding gene gene with protein product Approved 12q24.21 12q24.21 "TBX3-ISO|XHL" UMS ulnar mammary syndrome T-boxes 766 1997-06-18 2008-07-31 2013-09-05 6926 ENSG00000135111 OTTHUMG00000169586 uc001tvt.2 BC025258 "NM_016569|NM_005996" "CCDS9175|CCDS9176" O15119 8988164 MGI:98495 RGD:735203 TBX3 601621 119961 +HGNC:11603 TBX4 T-box 4 protein-coding gene gene with protein product Approved 17q23.2 17q23.2 T-boxes 766 1999-04-16 2016-01-15 9496 ENSG00000121075 OTTHUMG00000180078 uc002izi.3 AF188703 NM_018488 "CCDS11629|CCDS82180" P57082 10945475 MGI:102556 RGD:1309057 TBX4 601719 119966 +HGNC:11604 TBX5 T-box 5 protein-coding gene gene with protein product Approved 12q24.21 12q24.21 HOS T-boxes 766 1997-05-22 2016-10-12 6910 ENSG00000089225 OTTHUMG00000166191 uc001tvp.4 U89353 NM_080717 "CCDS9173|CCDS9174" Q99593 "8988165|8054982" MGI:102541 RGD:1305702 LRG_670|http://www.lrg-sequence.org/LRG/LRG_670 TBX5 601620 119968 +HGNC:27402 TBX5-AS1 TBX5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q24.21 12q24.21 TBX5 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 255480 ENSG00000255399 OTTHUMG00000166190 uc058tqv.1 NR_038440 +HGNC:11605 TBX6 T-box 6 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 T-boxes 766 1998-08-10 2014-11-19 6911 ENSG00000149922 OTTHUMG00000132115 uc010veh.3 AJ007989 "NM_004608|NM_080758" CCDS10670 O95947 "9888994|9933572" MGI:102539 RGD:1307716 TBX6 602427 332034 +HGNC:11593 TBX10 T-box 10 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 TBX13 TBX7 T-box 7 T-boxes 766 1997-10-24 2004-10-05 2005-10-11 347853 ENSG00000167800 OTTHUMG00000167291 uc001omp.3 AH006177 NM_005995 CCDS31621 O75333 9545502 MGI:1261436 RGD:1584144 TBX10 604648 +HGNC:11594 TBX15 T-box 15 protein-coding gene gene with protein product Approved 1p12 01p12 TBX14 T-box 14 T-boxes 766 1998-08-26 2004-10-05 2016-10-05 6913 ENSG00000092607 OTTHUMG00000012263 uc001ehl.2 AK127536 NM_152380 "CCDS30816|CCDS81360" Q96SF7 9693034 MGI:1277234 RGD:1308094 TBX15 604127 169905 +HGNC:11595 TBX18 T-box 18 protein-coding gene gene with protein product Approved 6q14.3 06q14.3 T-boxes 766 1999-02-01 2016-10-05 9096 ENSG00000112837 OTTHUMG00000015129 uc003pkl.4 AJ010278 NM_001080508 CCDS34495 O95935 "9888994|16688725|23242162" MGI:1923615 RGD:1309856 TBX18 604613 437168 +HGNC:52256 TBX18-AS1 TBX18 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q14.3 06q14.3 2015-10-30 2015-10-30 102724201 ENSG00000228290 OTTHUMG00000015128 NR_125875 +HGNC:11596 TBX19 T-box 19 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "dj747L4.1|TPIT" TBS 19 T-boxes 766 1999-02-01 2016-10-05 9095 ENSG00000143178 OTTHUMG00000034648 uc001gfl.5 AJ010277 NM_005149 CCDS1272 O60806 9888994 MGI:1891158 RGD:1310145 TBX19 604614 119955 +HGNC:11598 TBX20 T-box 20 protein-coding gene gene with protein product Approved 7p14.2 07p14.2 T-boxes 766 2000-08-31 2016-10-12 57057 ENSG00000164532 OTTHUMG00000099411 uc011kas.3 AJ237589 NM_020417 CCDS43568 Q9UMR3 10936053 MGI:1888496 RGD:1309396 LRG_755|http://www.lrg-sequence.org/LRG/LRG_755 TBX20 606061 237462 +HGNC:11599 TBX21 T-box 21 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "TBLYM|T-bet" T-boxes 766 2000-02-29 2015-02-24 30009 ENSG00000073861 OTTHUMG00000178287 uc002ilv.1 AF093098 NM_013351 CCDS11514 Q9UL17 MGI:1888984 RGD:1308264 TBX21 604895 +HGNC:11600 TBX22 T-box 22 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "CPX|CLPA" cleft palate and/or ankyloglossia T-boxes 766 2000-05-05 2014-11-19 50945 ENSG00000122145 OTTHUMG00000021901 uc010nmg.1 AL031000 NM_016954 CCDS14445 Q9Y458 "11559848|14729838" MGI:2389465 RGD:1589764 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TBX22 TBX22 300307 119959 +HGNC:11601 TBX23P T-box 23, pseudogene pseudogene pseudogene Approved 1q25 01q25 TBX23 T-box 23 T-boxes 766 2000-08-31 2005-10-11 2011-04-15 2011-04-15 57160 AL157899 +HGNC:11607 TBXA1R thromboxane A1 receptor other unknown Approved reserved reserved 1993-12-08 2013-04-03 6914 +HGNC:11608 TBXA2R thromboxane A2 receptor protein-coding gene gene with protein product Approved 19p13.3 19p13.3 Prostaglandin (prostanoid) receptors 207 1991-08-08 2016-10-12 6915 ENSG00000006638 OTTHUMG00000180806 uc002lyg.3 XM_011528214 "CCDS42467|CCDS54198" P21731 1825698 MGI:98496 RGD:3825 LRG_578|http://www.lrg-sequence.org/LRG/LRG_578 TBXA2R 188070 293114 objectId:346 +HGNC:11609 TBXAS1 thromboxane A synthase 1 protein-coding gene gene with protein product Approved 7q34 07q34 "CYP5|CYP5A1|THAS|TXS|TXAS|TS" cytochrome P450, family 5, subfamily A, polypeptide 1 "thromboxane A synthase 1 (platelet, cytochrome P450, subfamily V)|thromboxane A synthase 1 (platelet)" Cytochrome P450 family 5 1004 1992-10-07 2015-11-26 2016-10-12 6916 ENSG00000059377 OTTHUMG00000157302 uc003vvh.4 L36085 XM_017012569 "CCDS5855|CCDS5856|CCDS55174|CCDS55175" P24557 "1714723|8964509" MGI:98497 RGD:3826 "Human Cytochrome P450 (CYP) Allele Nomenclature Committee|http://www.cypalleles.ki.se/|LRG_579|http://www.lrg-sequence.org/LRG/LRG_579" TBXAS1 274180 137959 objectId:1353 5.3.99.5 +HGNC:19859 TC2N tandem C2 domains, nuclear protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "FLJ36557|Tac2-N|C2CD1" C2 calcium-dependent domain containing 1 "C14orf47|MTAC2D1" "chromosome 14 open reading frame 47|membrane targeting (tandem) C2 domain containing 1" Synaptotagmin like tandem C2 proteins 822 2002-11-27 2007-08-17 2007-08-17 2014-11-19 123036 ENSG00000165929 OTTHUMG00000171121 uc001xzv.6 AA243837 NM_152332 "CCDS9897|CCDS73679" Q8N9U0 11526914 MGI:1921663 RGD:1563876 TC2N +HGNC:22201 TCAF1 TRPM8 channel associated factor 1 protein-coding gene gene with protein product Approved 7q35 07q35 KIAA0738 FAM115A "family with sequence similarity 115, member A|TRPM8 channel-associated factor 1" 2007-08-16 2015-01-07 2016-03-15 2016-03-15 9747 ENSG00000198420 OTTHUMG00000157773 AB018281 NM_014719 "CCDS5886|CCDS56514" Q9Y4C2 "9872452|25559186" MGI:1914665 RGD:1565474 616251 +HGNC:33604 TCAF1P1 TRPM8 channel associated factor 1 pseudogene 1 pseudogene pseudogene Approved 7q35 07q35 FAM115B "family with sequence similarity 115, member B|family with sequence similarity 115, member B (pseudogene)|TRPM8 channel-associated factor 1 pseudogene 1" 2007-08-16 2015-01-07 2016-03-15 2016-03-15 653199 ENSG00000223459 OTTHUMG00000022870 NG_008224 PGOHUM00000233617 +HGNC:26878 TCAF2 TRPM8 channel associated factor 2 protein-coding gene gene with protein product Approved 7q35 07q35 FLJ40722 "FAM139A|FAM115C" "family with sequence similarity 139, member A|family with sequence similarity 115, member C|TRPM8 channel-associated factor 2" 2007-08-16 2015-01-07 2016-03-15 2016-04-25 285966 ENSG00000170379 OTTHUMG00000153232 AY167570 NM_173678 "CCDS34769|CCDS47735" A6NFQ2 25559186 MGI:2385258 616252 +HGNC:33603 TCAF2P1 TRPM8 channel associated factor 2 pseudogene 1 pseudogene pseudogene Approved 7q35 07q35 FLJ40722-like "FAM139B|FAM115D" "family with sequence similarity 139, member B|family with sequence similarity 115, member D (pseudogene)|TRPM8 channel-associated factor 2 pseudogene 1" 2007-08-16 2015-01-07 2016-03-15 2016-03-15 653691 ENSG00000159860 OTTHUMG00000153235 NR_110549 PGOHUM00000302994 +HGNC:25241 TCAIM T-cell activation inhibitor, mitochondrial protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "DKFZp313N0621|TOAG-1" tolerance associated gene-1 C3orf23 "chromosome 3 open reading frame 23|T cell activation inhibitor, mitochondrial" 2005-05-05 2012-08-22 2015-11-13 2016-10-05 285343 ENSG00000179152 OTTHUMG00000133049 uc003cnd.5 NM_173826 "CCDS2712|CCDS43076" Q8N3R3 12477932 MGI:1196217 RGD:1560717 +HGNC:30707 TCAM1P testicular cell adhesion molecule 1, pseudogene pseudogene pseudogene Approved 17q23.3 17q23.3 TCAM1 "testicular cell adhesion molecule 1 homolog (mouse)|testicular cell adhesion molecule 1 homolog (mouse), pseudogene" 2005-07-26 2010-03-12 2012-12-07 2015-05-06 146771 ENSG00000240280 OTTHUMG00000154404 AB026156 NR_002947 "11195349|2744760|19766163" MGI:1923120 612756 +HGNC:11610 TCAP titin-cap protein-coding gene gene with protein product Approved 17q12 17q12 "T-cap|TELE|telethonin|CMD1N" "19 kDa sarcomeric protein|teneurin C-terminal associated peptide" LGMD2G "limb girdle muscular dystrophy 2G (autosomal recessive)|titin-cap (telethonin)" 2000-02-16 2012-09-20 2016-10-12 8557 ENSG00000173991 OTTHUMG00000133215 uc002hsh.4 AJ000491 NM_003673 CCDS11342 O15273 "9350988|9817758" MGI:1330233 RGD:1592387 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/TCAP|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=TCAP|LRG_210|http://www.lrg-sequence.org/LRG/LRG_210" TCAP 604488 119971 +HGNC:11612 TCEA1 transcription elongation factor A1 protein-coding gene gene with protein product Approved 8q11.23 08q11.23 "SII|TF2S|TFIIS" transcription factor IIS "TCEA|GTF2S" transcription elongation factor A (SII), 1 General transcription factors 565 1994-08-03 2016-02-15 2016-10-05 6917 ENSG00000187735 OTTHUMG00000164262 uc003xru.5 X62585 NM_006756 "CCDS47857|CCDS47858" P23193 "8812434|8112616" MGI:1196624 RGD:1591965 TCEA1 601425 +HGNC:11613 TCEA1P1 transcription elongation factor A1 pseudogene 1 pseudogene pseudogene Approved 9q22.33 09q22.33 "GTF2SP|TCEA1P" transcription elongation factor A (SII), 1 pseudogene 1994-08-03 2010-01-12 2016-02-15 2016-02-15 6918 ENSG00000197214 OTTHUMG00000020311 X75159 NG_001200 8112616 PGOHUM00000236725 +HGNC:29891 TCEA1P2 transcription elongation factor A1 pseudogene 2 pseudogene pseudogene Approved 3p22 03p22 TCEA1 transcription elongation factor A (SII), 1 pseudogene 2 2004-02-03 2016-02-15 2016-02-15 399511 ENSG00000230409 NG_003186 +HGNC:30569 TCEA1P3 transcription elongation factor A1 pseudogene 3 pseudogene pseudogene Approved 9p13.1 09p13.1 transcription elongation factor A (SII), 1 pseudogene 3 2004-02-03 2016-02-15 2016-10-05 340501 ENSG00000215165 OTTHUMG00000019941 NG_021646 PGOHUM00000236460 +HGNC:31091 TCEA1P4 transcription elongation factor A1 pseudogene 4 pseudogene pseudogene Approved 9p21.1 09p21.1 transcription elongation factor A (SII), 1 pseudogene 4 2004-02-03 2016-02-15 2016-02-15 100421350 ENSG00000236184 OTTHUMG00000019756 NG_023798 PGOHUM00000236010 +HGNC:11614 TCEA2 transcription elongation factor A2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 TFIIS transcription elongation factor A (SII), 2 1996-12-27 2016-02-15 2016-02-15 6919 ENSG00000171703 OTTHUMG00000033026 uc061yqu.1 U86749 NM_198723 "CCDS13553|CCDS13554" Q15560 "9441762|8566795" MGI:107368 RGD:61825 TCEA2 604784 +HGNC:11615 TCEA3 transcription elongation factor A3 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 TFIIS.H transcription elongation factor A (SII), 3 1998-05-01 2016-02-15 2016-10-05 6920 ENSG00000204219 OTTHUMG00000003233 uc057dfl.1 AJ223473 NM_003196 CCDS44086 O75764 9790746 MGI:1196908 RGD:1311369 TCEA3 604128 +HGNC:11616 TCEAL1 transcription elongation factor A like 1 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "p21|pp21|SIIR|P21|WEX9" transcription elongation factor A (SII)-like 1 Transcription elongation factor A like family 1216 1998-09-21 2016-02-15 2016-10-05 9338 ENSG00000172465 OTTHUMG00000022699 uc004ekt.4 M99701 NM_004780 CCDS35358 Q15170 "8206389|7971997|16221301" MGI:2385317 RGD:1549724 TCEAL1 300237 +HGNC:29818 TCEAL2 transcription elongation factor A like 2 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "my048|MY0876G05|WEX1" transcription elongation factor A (SII)-like 2 Transcription elongation factor A like family 1216 2004-08-16 2016-02-15 2016-10-05 140597 ENSG00000184905 OTTHUMG00000022048 uc004eip.4 AF325115 NM_080390 CCDS14496 Q9H3H9 16221301 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TCEAL2 TCEAL2 +HGNC:28247 TCEAL3 transcription elongation factor A like 3 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "MGC15737|WEX8" transcription elongation factor A (SII)-like 3 Transcription elongation factor A like family 1216 2004-08-16 2016-02-15 2016-02-15 85012 ENSG00000196507 OTTHUMG00000022106 uc065aln.1 BC008703 NM_032926 CCDS14511 Q969E4 16221301 MGI:1913354 RGD:1562504 TCEAL3 +HGNC:41191 TCEAL3-AS1 TCEAL3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq22.2 Xq22.2 TCEAL3 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100874119 ENSG00000224031 OTTHUMG00000022105 uc065alp.1 AV651489 +HGNC:26121 TCEAL4 transcription elongation factor A like 4 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "FLJ21174|WEX7" transcription elongation factor A (SII)-like 4 Transcription elongation factor A like family 1216 2004-08-16 2016-02-15 2016-02-15 79921 ENSG00000133142 OTTHUMG00000022103 uc004ekm.4 AF314542 NM_024863 "CCDS14510|CCDS76004" Q96EI5 "14702039|16221301" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TCEAL4 TCEAL4 +HGNC:39582 TCEAL4P1 transcription elongation factor A like 4 pseudogene 1 pseudogene pseudogene Approved 13q13.3 13q13.3 transcription elongation factor A (SII)-like 4 pseudogene 1 2011-03-15 2016-02-15 2016-02-15 100874432 ENSG00000223543 OTTHUMG00000016737 NG_032322 PGOHUM00000248362 +HGNC:22282 TCEAL5 transcription elongation factor A like 5 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 WEX4 transcription elongation factor A (SII)-like 5 Transcription elongation factor A like family 1216 2004-08-16 2016-02-15 2016-10-05 340543 ENSG00000204065 OTTHUMG00000022092 uc004ejz.3 XM_291334 CCDS35356 Q5H9L2 16221301 MGI:3036236 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TCEAL5 TCEAL5 +HGNC:24553 TCEAL6 transcription elongation factor A like 6 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 WEX2 transcription elongation factor A (SII)-like 6 Transcription elongation factor A like family 1216 2005-10-13 2016-02-15 2016-02-15 158931 ENSG00000204071 OTTHUMG00000022050 uc065ajd.1 BC071675 NM_001006938 CCDS43978 Q6IPX3 16221301 MGI:1923939 TCEAL6 +HGNC:28336 TCEAL7 transcription elongation factor A like 7 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "MGC23947|WEX5" transcription elongation factor A (SII)-like 7 Transcription elongation factor A like family 1216 2004-08-16 2016-02-15 2016-10-05 56849 ENSG00000182916 OTTHUMG00000022096 uc004ekc.3 BC016786 NM_152278 CCDS14506 Q9BRU2 "14702039|16221301" MGI:1915746 RGD:1593009 TCEAL7 300771 +HGNC:28683 TCEAL8 transcription elongation factor A like 8 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "MGC45400|WEX3" transcription elongation factor A (SII)-like 8 Transcription elongation factor A like family 1216 2004-09-15 2016-02-15 2016-02-15 90843 ENSG00000180964 OTTHUMG00000022094 uc004ejx.4 AL833632 NM_153333 CCDS14504 Q8IYN2 16221301 MGI:1913934 RGD:1359631 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TCEAL8 TCEAL8 +HGNC:45245 TCEAL8P1 transcription elongation factor A like 8 pseudogene 1 pseudogene pseudogene Approved 3p14.1 03p14.1 transcription elongation factor A (SII)-like 8 pseudogene 1 2013-03-11 2016-02-15 2016-02-15 101059982 PGOHUM00000237643 +HGNC:30084 TCEAL9 transcription elongation factor A like 9 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "DKFZp313K1940|WEX6" pp21 homolog WBP5 WW domain binding protein 5 Transcription elongation factor A like family 1216 2004-06-03 2016-02-15 2016-02-15 2016-02-15 51186 ENSG00000185222 OTTHUMG00000022097 uc004eke.4 BC023544 NM_016303 CCDS14507 Q9UHQ7 16221301 MGI:109567 RGD:1592975 +HGNC:28277 TCEANC transcription elongation factor A N-terminal and central domain containing protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 MGC17403 transcription elongation factor A (SII) N-terminal and central domain containing 2009-01-30 2016-02-15 2016-02-15 170082 ENSG00000176896 OTTHUMG00000021154 uc064yap.1 NM_152634 "CCDS48081|CCDS75954" Q8N8B7 12477932 MGI:2685236 RGD:1584894 TCEANC +HGNC:26494 TCEANC2 transcription elongation factor A N-terminal and central domain containing 2 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 FLJ32112 C1orf83 "chromosome 1 open reading frame 83|transcription elongation factor A (SII) N-terminal and central domain containing 2" 2005-05-26 2011-01-25 2016-02-15 2016-02-15 127428 ENSG00000116205 OTTHUMG00000008434 uc001cwt.2 AK056674 NM_153035 CCDS587 Q96MN5 12477932 MGI:1913776 RGD:1359481 TCEANC2 +HGNC:11617 TCEB1 transcription elongation factor B subunit 1 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 SIII elongin C "transcription elongation factor B (SIII), polypeptide 1 (15kD, elongin C)|transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)" 1995-03-24 2016-03-11 2016-10-05 6921 ENSG00000154582 OTTHUMG00000164501 uc003yaa.3 L34587 NM_005648 "CCDS34910|CCDS56539" Q15369 "7821821|7660122" MGI:1915173 RGD:620658 TCEB1 600788 +HGNC:17762 TCEB1P2 transcription elongation factor B subunit 1 pseudogene 2 pseudogene pseudogene Approved 15q15.1 15q15.1 transcription elongation factor B (SIII), polypeptide 1 pseudogene 2 2004-04-05 2016-03-11 2016-03-11 283747 ENSG00000259838 OTTHUMG00000172717 NG_003219 +HGNC:29457 TCEB1P3 transcription elongation factor B subunit 1 pseudogene 3 pseudogene pseudogene Approved 10p14 10p14 dJ254P11.1 "transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) pseudogene 3|transcription elongation factor B (SIII), polypeptide 1 pseudogene 3" 2007-07-31 2016-03-11 2016-03-11 644540 ENSG00000229919 OTTHUMG00000017656 NG_009727 PGOHUM00000238675 +HGNC:38141 TCEB1P4 transcription elongation factor B subunit 1 pseudogene 4 pseudogene pseudogene Approved Yp11.2 Yp11.2 transcription elongation factor B (SIII), polypeptide 1 pseudogene 4 2010-04-21 2016-03-11 2016-03-11 100462873 ENSG00000232924 OTTHUMG00000041409 NG_021935 PGOHUM00000233920 +HGNC:38140 TCEB1P5 transcription elongation factor B subunit 1 pseudogene 5 pseudogene pseudogene Approved Yq11.223 Yq11.223 transcription elongation factor B (SIII), polypeptide 1 pseudogene 5 2010-04-21 2016-03-11 2016-03-11 100288493 ENSG00000271123 OTTHUMG00000185064 NG_023022 PGOHUM00000233800 +HGNC:38142 TCEB1P6 transcription elongation factor B subunit 1 pseudogene 6 pseudogene pseudogene Approved Yq11.222 Yq11.222 transcription elongation factor B (SIII), polypeptide 1 pseudogene 6 2010-04-21 2016-03-11 2016-03-11 100462867 ENSG00000225740 OTTHUMG00000041651 NG_021914 PGOHUM00000233764 +HGNC:38143 TCEB1P7 transcription elongation factor B subunit 1 pseudogene 7 pseudogene pseudogene Approved Yq11.222 Yq11.222 transcription elongation factor B (SIII), polypeptide 1 pseudogene 7 2010-04-21 2016-03-11 2016-03-11 100462868 ENSG00000230377 OTTHUMG00000041978 NG_021917 PGOHUM00000233775 +HGNC:38144 TCEB1P8 transcription elongation factor B subunit 1 pseudogene 8 pseudogene pseudogene Approved Yq11.223 Yq11.223 transcription elongation factor B (SIII), polypeptide 1 pseudogene 8 2010-04-21 2016-03-11 2016-03-11 100462869 ENSG00000234131 OTTHUMG00000043847 NG_021922 PGOHUM00000233813 +HGNC:38145 TCEB1P9 transcription elongation factor B subunit 1 pseudogene 9 pseudogene pseudogene Approved Yq11.23 Yq11.23 transcription elongation factor B (SIII), polypeptide 1 pseudogene 9 2010-04-21 2016-03-11 2016-03-11 100462870 ENSG00000231540 OTTHUMG00000044997 NG_021924 PGOHUM00000233831 +HGNC:38146 TCEB1P10 transcription elongation factor B subunit 1 pseudogene 10 pseudogene pseudogene Approved Yq11.23 Yq11.23 transcription elongation factor B (SIII), polypeptide 1 pseudogene 10 2010-04-21 2016-03-11 2016-03-11 100462871 ENSG00000234081 OTTHUMG00000045045 NG_021925 PGOHUM00000233836 +HGNC:38147 TCEB1P11 transcription elongation factor B subunit 1 pseudogene 11 pseudogene pseudogene Approved Yq12 Yq12 transcription elongation factor B (SIII), polypeptide 1 pseudogene 11 2010-04-21 2016-03-11 2016-03-11 100462872 ENSG00000227867 OTTHUMG00000045271 NG_021932 PGOHUM00000233880 +HGNC:38148 TCEB1P12 transcription elongation factor B subunit 1 pseudogene 12 pseudogene pseudogene Approved Yq11.222 Yq11.222 transcription elongation factor B (SIII), polypeptide 1 pseudogene 12 2010-04-21 2016-03-11 2016-03-11 100462874 ENSG00000230412 OTTHUMG00000041972 NG_004636 PGOHUM00000233979 +HGNC:38149 TCEB1P13 transcription elongation factor B subunit 1 pseudogene 13 pseudogene pseudogene Approved Yq11.222 Yq11.222 transcription elongation factor B (SIII), polypeptide 1 pseudogene 13 2010-04-21 2016-03-11 2016-03-11 100462875 ENSG00000225716 OTTHUMG00000041974 NG_004636 PGOHUM00000233989 +HGNC:38150 TCEB1P14 transcription elongation factor B subunit 1 pseudogene 14 pseudogene pseudogene Approved Yq11.222 Yq11.222 transcription elongation factor B (SIII), polypeptide 1 pseudogene 14 2010-04-21 2016-03-11 2016-03-11 100462876 ENSG00000228193 OTTHUMG00000041956 NG_028691 PGOHUM00000233997 +HGNC:38151 TCEB1P15 transcription elongation factor B subunit 1 pseudogene 15 pseudogene pseudogene Approved Yq11.223 Yq11.223 transcription elongation factor B (SIII), polypeptide 1 pseudogene 15 2010-04-21 2016-03-11 2016-03-11 100462877 ENSG00000232029 OTTHUMG00000043605 NG_004755 PGOHUM00000234021 +HGNC:38152 TCEB1P16 transcription elongation factor B subunit 1 pseudogene 16 pseudogene pseudogene Approved Yq11.23 Yq11.23 transcription elongation factor B (SIII), polypeptide 1 pseudogene 16 2010-04-21 2016-03-11 2016-03-11 100462878 ENSG00000227915 OTTHUMG00000044996 NG_004755 PGOHUM00000234042 +HGNC:38153 TCEB1P17 transcription elongation factor B subunit 1 pseudogene 17 pseudogene pseudogene Approved Yq12 Yq12 transcription elongation factor B (SIII), polypeptide 1 pseudogene 17 2010-04-21 2016-03-11 2016-03-11 100462879 ENSG00000232695 OTTHUMG00000045288 NG_004755 PGOHUM00000234091 +HGNC:38154 TCEB1P18 transcription elongation factor B subunit 1 pseudogene 18 pseudogene pseudogene Approved 1p31.3 01p31.3 transcription elongation factor B (SIII), polypeptide 1 pseudogene 18 2010-04-21 2016-03-11 2016-03-11 100130626 ENSG00000237622 OTTHUMG00000009210 NG_022971 PGOHUM00000244065 +HGNC:38155 TCEB1P19 transcription elongation factor B subunit 1 pseudogene 19 pseudogene pseudogene Approved 1p22.2 01p22.2 transcription elongation factor B (SIII), polypeptide 1 pseudogene 19 2010-04-21 2016-03-11 2016-03-11 100462880 ENSG00000241975 OTTHUMG00000010612 NG_022789 PGOHUM00000244785 +HGNC:38156 TCEB1P20 transcription elongation factor B subunit 1 pseudogene 20 pseudogene pseudogene Approved 1p13.1 01p13.1 transcription elongation factor B (SIII), polypeptide 1 pseudogene 20 2010-04-21 2016-03-11 2016-10-05 100287778 ENSG00000229101 OTTHUMG00000011972 NG_028102 PGOHUM00000244863 +HGNC:38157 TCEB1P21 transcription elongation factor B subunit 1 pseudogene 21 pseudogene pseudogene Approved 2p13.3 02p13.3 transcription elongation factor B (SIII), polypeptide 1 pseudogene 21 2010-04-21 2016-03-11 2016-03-11 100462866 ENSG00000226186 OTTHUMG00000153748 NG_021506 PGOHUM00000240089 +HGNC:38158 TCEB1P22 transcription elongation factor B subunit 1 pseudogene 22 pseudogene pseudogene Approved 11q23.3 11q23.3 transcription elongation factor B (SIII), polypeptide 1 pseudogene 22 2010-04-21 2016-03-11 2016-03-11 100287579 ENSG00000255006 OTTHUMG00000166091 NG_022978 PGOHUM00000290727 +HGNC:38159 TCEB1P23 transcription elongation factor B subunit 1 pseudogene 23 pseudogene pseudogene Approved 13q22.3 13q22.3 transcription elongation factor B (SIII), polypeptide 1 pseudogene 23 2010-04-21 2016-03-11 2016-10-05 100462881 ENSG00000224686 OTTHUMG00000017120 NG_021970 PGOHUM00000248640 +HGNC:38160 TCEB1P24 transcription elongation factor B subunit 1 pseudogene 24 pseudogene pseudogene Approved Xq28 and Yq12 Xq28 and Yq12 TCEB1P25 "transcription elongation factor B (SIII), polypeptide 1 pseudogene 25|transcription elongation factor B (SIII), polypeptide 1 pseudogene 24" Pseudoautosomal region 2 716 2010-04-21 2016-03-11 2016-03-11 100287692 ENSG00000228410 OTTHUMG00000040493 NG_023013 PGOHUM00000241623 +HGNC:38731 TCEB1P26 transcription elongation factor B subunit 1 pseudogene 26 pseudogene pseudogene Approved Yq11.222 Yq11.222 transcription elongation factor B (SIII), polypeptide 1 pseudogene 26 2010-07-28 2016-03-11 2016-03-11 101059905 ENSG00000236599 OTTHUMG00000041962 NG_033276 +HGNC:31692 TCEB1P27 transcription elongation factor B subunit 1 pseudogene 27 pseudogene pseudogene Approved 18p11.31 18p11.31 transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C) pseudogene 27 2012-06-27 2016-03-11 2016-03-11 107133523 NG_046681 PGOHUM00000234977 +HGNC:49169 TCEB1P28 transcription elongation factor B subunit 1 pseudogene 28 pseudogene pseudogene Approved 19p13.3 19p13.3 transcription elongation factor B (SIII), polypeptide 1 pseudogene 28 2013-09-24 2016-03-11 2016-03-11 100287483 ENSG00000105694 OTTHUMG00000180543 NG_012739 PGOHUM00000263456 +HGNC:49170 TCEB1P29 transcription elongation factor B subunit 1 pseudogene 29 pseudogene pseudogene Approved 19p13.2 19p13.2 transcription elongation factor B (SIII), polypeptide 1 pseudogene 29 2013-09-24 2016-03-11 2016-03-11 100132973 ENSG00000267418 OTTHUMG00000179933 NG_021739 PGOHUM00000234138 +HGNC:49171 TCEB1P30 transcription elongation factor B subunit 1 pseudogene 30 pseudogene pseudogene Approved 10q11.21 10q11.21 transcription elongation factor B (SIII), polypeptide 1 pseudogene 30 2013-09-24 2016-03-11 2016-03-11 106481670 ENSG00000223746 OTTHUMG00000018045 NG_042952 PGOHUM00000238438 +HGNC:49172 TCEB1P31 transcription elongation factor B subunit 1 pseudogene 31 pseudogene pseudogene Approved 12p12.1 12p12.1 transcription elongation factor B (SIII), polypeptide 1 pseudogene 31 2013-09-24 2016-03-11 2016-03-11 100422582 ENSG00000256021 OTTHUMG00000169130 NG_023990 PGOHUM00000239369 +HGNC:49173 TCEB1P32 transcription elongation factor B subunit 1 pseudogene 32 pseudogene pseudogene Approved 12q24.22 12q24.22 transcription elongation factor B (SIII), polypeptide 1 pseudogene 32 2013-09-24 2016-03-11 2016-03-11 106481964 ENSG00000257465 OTTHUMG00000169496 NG_045384 PGOHUM00000239586 +HGNC:49174 TCEB1P33 transcription elongation factor B subunit 1 pseudogene 33 pseudogene pseudogene Approved 4p14 04p14 transcription elongation factor B (SIII), polypeptide 1 pseudogene 33 2013-09-24 2016-03-11 2016-03-11 101928827 ENSG00000271278 OTTHUMG00000184983 PGOHUM00000245883 +HGNC:49175 TCEB1P34 transcription elongation factor B subunit 1 pseudogene 34 pseudogene pseudogene Approved Yq11.23 Yq11.23 transcription elongation factor B (SIII), polypeptide 1 pseudogene 34 2013-09-24 2016-03-11 2016-03-11 106481671 ENSG00000270535 OTTHUMG00000185077 NG_042961 PGOHUM00000234086 +HGNC:49176 TCEB1P35 transcription elongation factor B subunit 1 pseudogene 35 pseudogene pseudogene Approved Yq11.221 Yq11.221 transcription elongation factor B (SIII), polypeptide 1 pseudogene 35 2013-09-24 2016-03-11 2016-03-11 106480250 ENSG00000271595 OTTHUMG00000185085 NG_043881 PGOHUM00000233754 +HGNC:11619 TCEB2 transcription elongation factor B subunit 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 SIII elongin B transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) 1995-09-14 2016-03-11 2016-10-05 6923 ENSG00000103363 OTTHUMG00000154125 uc002crn.4 L42856 NM_007108 "CCDS32374|CCDS45387" Q15370 7638163 MGI:1914923 RGD:621200 TCEB2 600787 +HGNC:39719 TCEB2P1 transcription elongation factor B subunit 2 pseudogene 1 pseudogene pseudogene Approved 13q12.13 13q12.13 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 1 2011-03-24 2016-03-11 2016-03-11 246717 ENSG00000234152 OTTHUMG00000016607 NG_001581 PGOHUM00000248339 +HGNC:39720 TCEB2P2 transcription elongation factor B subunit 2 pseudogene 2 pseudogene pseudogene Approved 11q24.3 11q24.3 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 2 2011-03-24 2016-03-11 2016-03-11 253665 ENSG00000255262 OTTHUMG00000165765 NG_005176 TCEB2P2 PGOHUM00000242537 +HGNC:39721 TCEB2P3 transcription elongation factor B subunit 2 pseudogene 3 pseudogene pseudogene Approved 2p16.3 02p16.3 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 3 2011-03-24 2016-03-11 2016-03-11 100856810 ENSG00000232285 OTTHUMG00000152104 NG_031883 PGOHUM00000240638 +HGNC:39722 TCEB2P4 transcription elongation factor B subunit 2 pseudogene 4 pseudogene pseudogene Approved 10p11.21 10p11.21 transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B) pseudogene 4 2011-03-24 2016-03-11 2016-03-11 100874519 ENSG00000234167 OTTHUMG00000017943 NG_032352 PGOHUM00000238402 +HGNC:11620 TCEB3 transcription elongation factor B subunit 3 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "SIII|TCEB3A" elongin A transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A) 1995-09-14 2016-03-11 2016-10-05 6924 ENSG00000011007 OTTHUMG00000002957 uc057dgm.1 L47345 NM_003198 CCDS239 Q14241 "8586449|7660129" MGI:1351315 RGD:3827 TCEB3 600786 +HGNC:50582 TCEB3-AS1 TCEB3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.11 01p36.11 2014-05-21 2014-05-21 100506963 ENSG00000236810 OTTHUMG00000002959 NR_038280 +HGNC:30771 TCEB3B transcription elongation factor B subunit 3B protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "HsT832|TCEB3L" "transcription elongation factor (SIII) elongin A2|elongin A2" transcription elongation factor B polypeptide 3B (elongin A2) 2004-01-16 2016-03-11 2016-03-11 51224 ENSG00000206181 OTTHUMG00000132649 uc002lcr.2 BC036022 NM_016427 CCDS11932 Q8IYF1 "7660129|8244996" TCEB3B 609522 +HGNC:24617 TCEB3C transcription elongation factor B subunit 3C protein-coding gene gene with protein product Approved 18q21.1 18q21.1 "HsT829|TCEB3L2" elongin A3 transcription elongation factor B polypeptide 3C (elongin A3) 2004-01-16 2016-03-11 2016-03-11 162699 ENSG00000183791 OTTHUMG00000132651 uc010xdb.2 AB076840 NM_145653 CCDS11931 Q8NG57 "11932239|11994304" TCEB3C +HGNC:31007 TCEB3CL transcription elongation factor B subunit 3C like protein-coding gene gene with protein product Approved 18q21.1 18q21.1 HsT828 transcription elongation factor B polypeptide 3C-like 2004-01-16 2016-03-11 2016-03-11 728929 ENSG00000275553 OTTHUMG00000188256 uc060owu.1 XM_001132059 Q3SY89 TCEB3CL +HGNC:33511 TCEB3CL2 transcription elongation factor B subunit 3C like 2 protein-coding gene gene with protein product Approved 18q21.1 18q21.1 transcription elongation factor B polypeptide 3C-like 2 2007-07-18 2016-03-11 2016-03-11 100506888 ENSG00000274744 OTTHUMG00000180382 uc021ujk.2 XM_929328 CCDS59316 A6NLF2 RGD:1586821 TCEB3CL2 +HGNC:15630 TCERG1 transcription elongation regulator 1 protein-coding gene gene with protein product Approved 5q32 05q32 "CA150|Urn1" "transcription factor CA150|co-activator of 150 kDa|TATA box binding protein (TBP)-associated factor, RNA polymerase II, S, 150kD|TATA box-binding protein-associated factor 2S" TAF2S TATA box binding protein (TBP)-associated factor, RNA polymerase II, S, 150kD 2001-06-20 2002-01-25 2002-01-24 2016-10-05 10915 ENSG00000113649 OTTHUMG00000129683 uc003lob.4 AF017789 NM_001040006 "CCDS4282|CCDS43379" O14776 "9315662|11003711" MGI:1926421 RGD:1311748 TCERG1 605409 +HGNC:23533 TCERG1L transcription elongation regulator 1 like protein-coding gene gene with protein product Approved 10q26.3 10q26.3 FLJ38950 transcription elongation regulator 1-like 2003-11-21 2015-12-04 2015-12-04 256536 ENSG00000176769 OTTHUMG00000019276 uc001lkp.4 AK096269 NM_174937 CCDS7662 Q5VWI1 MGI:1917821 RGD:1562437 TCERG1L +HGNC:49532 TCERG1L-AS1 TCERG1L antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q26.3 10q26.3 2014-01-08 2014-01-08 101927489 ENSG00000230098 OTTHUMG00000019275 "BQ007413|BQ011025|BQ011765" XR_242764 +HGNC:11633 TCF3 transcription factor 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "E2A|ITF1|MGC129647|MGC129648|bHLHb21|VDIR|E47" "transcription factor E2-alpha|immunoglobulin transcription factor 1|kappa-E2-binding factor|E2A immunoglobulin enhancer-binding factor E12/E47|VDR interacting repressor" Basic helix-loop-helix proteins 420 1990-07-26 2013-02-26 2014-11-19 6929 ENSG00000071564 OTTHUMG00000180031 uc002ltr.3 M65214 NM_003200 "CCDS12074|CCDS45899" P15923 "2308859|1967983" MGI:98510 RGD:620914 TCF3 147141 171640 +HGNC:49742 TCF3P1 transcription factor 3 pseudogene 1 pseudogene pseudogene Approved 9p24.1 09p24.1 2014-02-13 2014-02-13 100129107 ENSG00000236567 OTTHUMG00000019487 NG_009760 PGOHUM00000263534 +HGNC:11634 TCF4 transcription factor 4 protein-coding gene gene with protein product Approved 18q21.2 18q21.2 "SEF2-1B|ITF2|bHLHb19|E2-2" Basic helix-loop-helix proteins 420 1990-10-16 2016-10-05 6925 ENSG00000196628 OTTHUMG00000132713 uc002lfz.3 M74719 NM_003199 "CCDS11960|CCDS42438|CCDS58623|CCDS58624|CCDS58625|CCDS58626|CCDS58627|CCDS58628|CCDS58629|CCDS58630|CCDS58631|CCDS59321|CCDS77191|CCDS77192|CCDS82255|CCDS82257" P15884 "9302263|2308860" MGI:98506 RGD:69271 LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=TCF4 TCF4 602272 158595 +HGNC:51642 TCF4-AS1 TCF4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18q21.2 18q21.2 MIR4529HG MIR4529 host gene 2015-04-09 2015-04-09 105372127 ENSG00000267028 OTTHUMG00000179868 NR_132985 +HGNC:51643 TCF4-AS2 TCF4 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 18q21.2 18q21.2 2015-04-09 2015-04-09 106480339 ENSG00000267402 OTTHUMG00000179869 +HGNC:11639 TCF7 transcription factor 7 (T-cell specific, HMG-box) protein-coding gene gene with protein product Approved 5q31.1 05q31.1 TCF-1 1991-08-18 2016-10-05 6932 ENSG00000081059 OTTHUMG00000129124 uc003kyt.4 Z47362 NM_201634 "CCDS4169|CCDS4170|CCDS43362|CCDS47263" P36402 MGI:98507 RGD:1305894 TCF7 189908 +HGNC:11640 TCF7L1 transcription factor 7 like 1 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 TCF3 transcription factor 7-like 1 (T-cell specific, HMG-box) 1998-01-20 2016-02-01 2016-02-01 83439 ENSG00000152284 OTTHUMG00000130026 uc002soy.4 X62870 NM_031283 CCDS1971 Q9HCS4 "1741298|11085512" MGI:1202876 RGD:1311671 TCF7L1 604652 +HGNC:41388 TCF7L1-IT1 TCF7L1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2p11.2 02p11.2 TCF7L1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874334 ENSG00000231134 OTTHUMG00000153211 uc061ley.1 +HGNC:11641 TCF7L2 transcription factor 7 like 2 protein-coding gene gene with protein product Approved 10q25.2-q25.3 10q25.2-q25.3 TCF-4 TCF4 transcription factor 7-like 2 (T-cell specific, HMG-box) 1998-01-20 2016-02-01 2016-10-11 6934 ENSG00000148737 OTTHUMG00000019070 uc001lac.5 X62871 NM_030756 "CCDS7576|CCDS53578|CCDS55729|CCDS73196|CCDS73197|CCDS73198|CCDS53577|CCDS81504" Q9NQB0 1741298 MGI:1202879 RGD:1583621 TCF7L2 602228 +HGNC:11623 TCF12 transcription factor 12 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "HEB|HTF4|HsT17266|bHLHb20" helix-loop-helix transcription factor 4 Basic helix-loop-helix proteins 420 1994-06-17 2008-07-31 2016-10-05 6938 ENSG00000140262 OTTHUMG00000132047 uc002aea.4 BC050556 NM_003205 "CCDS10159|CCDS10160|CCDS42042|CCDS76760|CCDS76761" Q99081 1886779 MGI:101877 RGD:3829 TCF12 600480 330703 +HGNC:11627 TCF15 transcription factor 15 (basic helix-loop-helix) protein-coding gene gene with protein product Approved 20p13 20p13 "EC2|PARAXIS|bHLHa40" Basic helix-loop-helix proteins 420 1995-02-21 2014-11-19 6939 ENSG00000125878 OTTHUMG00000031640 uc002wdz.4 NM_004609 CCDS33432 Q12870 "8825648|8041747" MGI:104664 RGD:1308464 TCF15 601010 +HGNC:11629 TCF19 transcription factor 19 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 SC1 PHD finger proteins 88 1995-08-14 2009-02-05 2016-10-05 6941 ENSG00000137310 OTTHUMG00000031274 uc063mzg.1 U25826 NM_007109 CCDS43446 Q9Y242 "1868030|8595903" MGI:103180 RGD:1302974 TCF19 600912 +HGNC:11631 TCF20 transcription factor 20 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "AR1|SPBP" stromelysin-1 platelet-derived growth factor-responsive element binding protein transcription factor 20 (AR1) 1996-04-12 2016-07-04 2016-10-12 6942 ENSG00000100207 OTTHUMG00000150920 uc003bcj.3 U19345 NM_181492 "CCDS14032|CCDS14033" Q9UGU0 "9730594|10995766" MGI:108399 RGD:1594486 LRG_1025|http://www.lrg-sequence.org/LRG/LRG_1025 TCF20 603107 +HGNC:11632 TCF21 transcription factor 21 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "POD1|bHLHa23" Basic helix-loop-helix proteins 420 1998-07-15 2016-10-12 6943 ENSG00000118526 OTTHUMG00000015608 uc003qei.5 AF047419 NM_198392 CCDS5167 O43680 9507058 MGI:1202715 RGD:620523 LRG_446|http://www.lrg-sequence.org/LRG/LRG_446 TCF21 603306 +HGNC:18602 TCF23 transcription factor 23 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "OUT|bHLHa24" Basic helix-loop-helix proteins 420 2002-05-01 2014-11-19 150921 ENSG00000163792 OTTHUMG00000152031 uc010ylg.3 AC013403 NM_175769 CCDS33163 Q7RTU1 "11701948|10652346" MGI:1934960 RGD:1586500 TCF23 609635 +HGNC:32275 TCF24 transcription factor 24 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 bHLHa25 Basic helix-loop-helix proteins 420 2005-10-04 2015-09-08 100129654 ENSG00000261787 OTTHUMG00000177282 uc022avl.1 BK000144 NM_001193502 CCDS59103 Q7RTU0 14516699 MGI:3780500 RGD:1589398 TCF24 +HGNC:29181 TCF25 transcription factor 25 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "Nulp1|KIAA1049" transcription factor 25 (basic helix-loop-helix) 2006-05-05 2016-03-22 2016-03-22 22980 ENSG00000141002 OTTHUMG00000138986 uc002fpb.3 AF322111 NM_014972 CCDS10987 Q9BQ70 "12107429|16574069" MGI:1914105 RGD:1309054 TCF25 612326 +HGNC:11646 TCFL5 transcription factor like 5 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "Figlb|E2BP-1|CHA|bHLHe82" HPV-16 E2 binding protein 1 transcription factor-like 5 (basic helix-loop-helix) Basic helix-loop-helix proteins 420 1998-11-19 2016-04-06 2016-04-06 10732 ENSG00000101190 OTTHUMG00000032939 uc002ydp.3 AB012124 NM_006602 CCDS13506 Q9UL49 9763657 MGI:2672878 RGD:1305899 TCFL5 604745 +HGNC:11791 TCHH trichohyalin protein-coding gene gene with protein product Approved 1q21.3 01q21.3 THH EF-hand domain containing 863 1993-04-27 2006-01-27 2016-10-05 7062 ENSG00000159450 OTTHUMG00000013066 uc001ezp.3 L09190 NM_007113 CCDS41396 Q07283 1431214 MGI:2177944 RGD:1309635 TCHH 190370 +HGNC:31796 TCHHL1 trichohyalin like 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "S100A17|THHL1" "S100 calcium binding protein A17|trichohyalin-like 1" S100 calcium binding proteins 459 2004-08-11 2006-01-27 2015-11-11 2015-11-11 126637 ENSG00000182898 OTTHUMG00000013058 uc001ezo.1 XM_060104 CCDS30857 Q5QJ38 MGI:1918575 RGD:1308305 TCHHL1 +HGNC:28135 TCHP trichoplein keratin filament binding protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "MGC10854|TpMs" mitostatin trichoplein, keratin filament binding 2006-01-27 2016-03-14 2016-03-14 84260 ENSG00000139437 OTTHUMG00000169281 uc001tpn.4 AK092736 NM_032300 CCDS9137 Q9BT92 "15731013|20930847" MGI:1925082 RGD:1310813 TCHP 612654 +HGNC:11647 TCIRG1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit a3 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "TIRC7|OC-116|OC116|ATP6N1C|Atp6i|a3|ATP6V0A3" T-cell immune response cDNA 7 "T-cell, immune regulator 1|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein a isoform 3|T-cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 subunit A3" V-type ATPases 415 1999-02-15 2016-02-11 2016-10-12 10312 ENSG00000110719 OTTHUMG00000167358 uc001one.4 AF025374 NM_006019 "CCDS8177|CCDS53670" Q13488 "8579597|9806637" MGI:1350931 RGD:735136 "TCIRG1base: Mutation registry for autosomal recessive osteopetrosis|http://structure.bmc.lu.se/idbase/TCIRG1base/|LRG_115|http://www.lrg-sequence.org/LRG/LRG_115" TCIRG1 604592 119990 objectId:825 +HGNC:11648 TCL1A T-cell leukemia/lymphoma 1A protein-coding gene gene with protein product Approved 14q32.1 14q32.1 TCL1 1998-12-03 2015-09-08 8115 ENSG00000100721 OTTHUMG00000171390 uc001yfc.4 X82240 XM_017021676 CCDS9941 P56279 "2783489|7809072" MGI:1097166 RGD:1594686 TCL1A 186960 330909 +HGNC:11649 TCL1B T-cell leukemia/lymphoma 1B protein-coding gene gene with protein product Approved 14q32.13 14q32.13 TML1 1998-12-03 2016-10-05 9623 ENSG00000213231 OTTHUMG00000028912 uc001yez.3 AB018563 NM_004918 CCDS32151 O95988 10077617 "MGI:1351600|MGI:1351601|MGI:1351604|MGI:1351609|MGI:1351635" TCL1B 603769 +HGNC:11650 TCL4 T-cell leukemia/lymphoma 4 other region Approved 2q34 02q34 1993-01-20 2003-09-18 6946 "3194416|2189107" 186860 +HGNC:13463 TCL6 T-cell leukemia/lymphoma 6 (non-protein coding) non-coding RNA RNA, long non-coding Approved 14q32.13 14q32.13 "TCL6e1|TNG2|TNG1" T-cell leukemia/lymphoma 6 2001-02-07 2010-06-01 2016-10-05 27004 ENSG00000187621 OTTHUMG00000149979 uc001yeu.3 AB035338 NM_012468 "10588720|10851082" TCL6 604412 +HGNC:11652 TCN1 transcobalamin 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "TCI|TC1" "haptocorin|haptocorrin" "transcobalamin I (vitamin B12 binding protein, R binder family)|transcobalamin I" 1990-06-11 2015-12-08 2016-10-05 6947 ENSG00000134827 OTTHUMG00000167400 uc001noj.3 J05068 NM_001062 CCDS7978 P20061 TCN1 189905 +HGNC:11653 TCN2 transcobalamin 2 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "D22S676|D22S750|TC2" macrocytic anemia "transcobalamin II; macrocytic anemia|transcobalamin II" 2001-06-22 2015-12-08 2016-10-12 6948 ENSG00000185339 OTTHUMG00000151095 uc003aip.3 NM_000355 "CCDS13881|CCDS54519" P20062 "1708393|7742531" MGI:98534 RGD:620681 "TCN2base: Mutation registry for Transcobalamin II deficiency|http://structure.bmc.lu.se/idbase/TCN2base/|LRG_116|http://www.lrg-sequence.org/LRG/LRG_116" TCN2 613441 119999 +HGNC:11654 TCOF1 treacle ribosome biogenesis factor 1 protein-coding gene gene with protein product Approved 5q32-q33.1 05q32-q33.1 "treacle|TCS" Treacher Collins-Franceschetti syndrome 1 1991-05-21 2016-02-17 2016-10-11 6949 ENSG00000070814 OTTHUMG00000130081 uc003lry.4 NM_001008656 "CCDS4306|CCDS47305|CCDS47306|CCDS47307|CCDS54936" Q13428 1765376 MGI:892003 RGD:1309850 LOVD TCOF1 mutation database|http://databases.lovd.nl/my_genome/genes/TCOF1 TCOF1 606847 120003 +HGNC:11655 TCP1 t-complex 1 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "D6S230E|CCT1|Ccta" Chaperonins 587 2001-06-22 2016-10-05 6950 ENSG00000120438 OTTHUMG00000015937 uc003qsr.4 X52882 NM_030752 "CCDS5269|CCDS43522" P17987 "3476253|3653076" MGI:98535 RGD:3832 TCP1 186980 +HGNC:11659 TCP1P1 t-complex 1 pseudogene 1 pseudogene pseudogene Approved 7p14.1 07p14.1 TCP1L1 t-complex 1-like 1 2001-06-22 2008-09-22 2008-09-22 2014-11-19 647047 ENSG00000229161 OTTHUMG00000155181 NG_006549 PGOHUM00000233205 +HGNC:11660 TCP1P2 t-complex 1 pseudogene 2 pseudogene pseudogene Approved 5p13.1 05p13.1 TCP1L2 t-complex 1-like 2 2001-06-22 2008-09-22 2008-09-22 2014-11-19 6952 NG_003036 +HGNC:21630 TCP1P3 t-complex 1 pseudogene 3 pseudogene pseudogene Approved 12p12.2 12p12.2 TCP1L3 t-complex 1-like 3 2003-07-01 2008-09-22 2008-09-22 2014-11-18 400013 XR_017001 +HGNC:11656 TCP10 t-complex 10 protein-coding gene gene with protein product Approved 6q27 06q27 "t-complex 10 (a murine tcp homolog)|t-complex 10 (mouse)|t-complex 10 homolog (mouse)" 1989-06-30 2012-09-20 2015-09-08 6953 ENSG00000203690 OTTHUMG00000016026 uc003qvv.2 U03399 NM_004610 CCDS43527 Q12799 8111376 TCP10 187020 +HGNC:11657 TCP10L t-complex 10-like protein-coding gene gene with protein product Approved 21q22.11 21q22.11 PRED77 "t-complex 10 (a murine tcp homolog)-like|t-complex 10 (mouse)-like" 2000-05-23 2012-09-20 2016-10-05 140290 ENSG00000242220 OTTHUMG00000064901 uc002ypw.5 AF115967 NM_144659 CCDS13616 Q8TDR4 10830953 RGD:1307454 TCP10L 608365 +HGNC:21254 TCP10L2 t-complex 10-like 2 protein-coding gene gene with protein product Approved 6q27 06q27 bA517H2.3 t-complex 10-like 2 (mouse) 2003-11-27 2012-09-20 2015-09-08 401285 ENSG00000166984 OTTHUMG00000016014 uc010kkp.3 XR_040749 CCDS47514 B9ZVM9 TCP10L2 +HGNC:11658 TCP11 t-complex 11 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "KIAA0229|FPPR" fertilization-promoting peptide receptor D6S230E "t-complex 11 (a murine tcp homolog)|t-complex 11 homolog (mouse)|t-complex 11, testis-specific" 1992-11-25 2016-03-14 2016-03-14 6954 ENSG00000124678 OTTHUMG00000014560 uc003oka.4 NM_001093728 "CCDS4799|CCDS47413|CCDS59015|CCDS59016|CCDS59017|CCDS59018" Q8WWU5 "1427894|11756566|21597245" MGI:98544 RGD:1359387 TCP11 186982 +HGNC:25655 TCP11L1 t-complex 11 like 1 protein-coding gene gene with protein product Approved 11p13 11p13 FLJ11336 "t-complex 11 (mouse) like 1|t-complex 11, testis-specific-like 1" 2005-10-04 2016-03-14 2016-03-14 55346 ENSG00000176148 OTTHUMG00000165303 uc001mud.3 BC041696 NM_018393 CCDS7882 Q9NUJ3 MGI:2444263 RGD:1562313 TCP11L1 +HGNC:28627 TCP11L2 t-complex 11 like 2 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 MGC40368 "t-complex 11 (mouse) like 2|t-complex 11 (mouse)-like 2|t-complex 11, testis-specific-like 2" 2005-10-04 2016-03-14 2016-03-14 255394 ENSG00000166046 OTTHUMG00000170087 uc001tln.5 BC033617 NM_152772 "CCDS9104|CCDS66456" Q8N4U5 MGI:2444679 RGD:1307494 TCP11L2 +HGNC:48369 TCP11X1 t-complex 11 family, X-linked 1 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 2013-05-14 2015-09-08 100996631 ENSG00000268235 OTTHUMG00000022051 XM_017030010 B4DZS4 PGOHUM00000306176 +HGNC:48335 TCP11X2 t-complex 11 family, X-linked 2 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 2013-05-14 2015-09-08 100996648 ENSG00000215029 OTTHUMG00000152591 NM_001277423 CCDS59530 Q5H9J9 MGI:1919091 RGD:1598081 +HGNC:48370 TCP11X3P t-complex 11 family, X-linked 3, pseudogene pseudogene pseudogene Approved Xq22.1 Xq22.1 2013-05-14 2015-02-10 106481605 ENSG00000251525 OTTHUMG00000189498 NG_044465 PGOHUM00000241915 +HGNC:11669 TCRBVO@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2011-01-11 +HGNC:11692 TCTA T-cell leukemia translocation altered protein-coding gene gene with protein product Approved 3p21.31 03p21.31 T-cell leukemia translocation altered gene 1995-08-11 2012-02-27 2016-10-05 6988 ENSG00000145022 OTTHUMG00000156846 uc003cwv.5 NM_022171 CCDS2796 P57738 7728759 MGI:1918829 RGD:1359333 TCTA 600690 +HGNC:11693 TCTE1 t-complex-associated-testis-expressed 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "D6S46|MGC33600|FAP155|DRC5" Dynein regulatory complex 981 1990-10-25 2016-10-05 202500 ENSG00000146221 OTTHUMG00000014763 uc003oxi.3 BC035022 NM_182539 CCDS4910 Q5JU00 "2568335|8646886" MGI:98640 RGD:1305744 TCTE1 186975 +HGNC:11695 TCTE3 t-complex-associated-testis-expressed 3 protein-coding gene gene with protein product Approved 6q27 06q27 TCTEX1D3 Tctex1 domain containing 3 1991-11-19 2014-11-19 6991 ENSG00000184786 OTTHUMG00000016068 uc003qxe.2 AF519569 NM_174910 CCDS5310 Q8IZS6 "1505969|12584439" "MGI:98642|MGI:3809205|MGI:3781595" RGD:1310947 TCTE3 186977 +HGNC:26882 TCTEX1D1 Tctex1 domain containing 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 FLJ40873 2005-12-01 2016-10-05 200132 ENSG00000152760 OTTHUMG00000009162 uc001dcv.4 AK098192 NM_152665 CCDS633 Q8N7M0 MGI:1914594 RGD:1311932 TCTEX1D1 +HGNC:28482 TCTEX1D2 Tctex1 domain containing 2 protein-coding gene gene with protein product Approved 3q29 03q29 MGC33212 2007-12-17 2015-09-28 255758 ENSG00000213123 OTTHUMG00000186382 uc003fwi.4 BC021177 NM_152773 CCDS33929 Q8WW35 25205765 MGI:1913311 RGD:1563597 TCTEX1D2 +HGNC:32315 TCTEX1D4 Tctex1 domain containing 4 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 novel Tctex-1 family domain-containing protein 2007-12-17 2014-11-19 343521 ENSG00000188396 uc057fwn.1 BC092499 NM_001013632 CCDS30699 Q5JR98 12477932 MGI:3045358 RGD:1565942 TCTEX1D4 611713 +HGNC:26113 TCTN1 tectonic family member 1 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "FLJ21127|TECT1|JBTS13" Tectonic proteins 767 2007-08-20 2014-11-19 79600 ENSG00000204852 OTTHUMG00000150051 uc001trn.6 AK055891 NM_024549 "CCDS41833|CCDS41834|CCDS41835" Q2MV58 16357211 MGI:3603820 RGD:1566266 TCTN1 609863 274226 +HGNC:25774 TCTN2 tectonic family member 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "FLJ12975|TECT2|MKS8|JBTS24" Meckel syndrome, type 8 C12orf38 chromosome 12 open reading frame 38 Tectonic proteins 767 2006-01-23 2007-08-20 2007-08-20 2016-02-18 79867 ENSG00000168778 OTTHUMG00000168700 uc001ufp.3 AK056924 NM_024809 "CCDS9253|CCDS45007" Q96GX1 21462283 MGI:1915228 RGD:1591895 TCTN2 613846 260361 +HGNC:24519 TCTN3 tectonic family member 3 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 "DKFZP564D116|TECT3|JBTS18" C10orf61 chromosome 10 open reading frame 61 Tectonic proteins 767 2004-05-27 2007-08-20 2007-08-20 2015-08-26 26123 ENSG00000119977 OTTHUMG00000018814 uc001klb.4 AK098295 NM_015631 "CCDS31258|CCDS44461" Q6NUS6 12975309 MGI:1914840 RGD:1305166 TCTN3 613847 310043 +HGNC:11700 TDG thymine DNA glycosylase protein-coding gene gene with protein product Approved 12q23.3 12q23.3 G/T mismatch-specific thymine DNA glycosylase DNA glycosylases 1024 1997-04-25 2015-06-23 2016-10-05 6996 ENSG00000139372 OTTHUMG00000168418 uc001tkg.4 U51166 NM_003211 CCDS9095 Q13569 "8662714|9299239" MGI:108247 RGD:620959 TDG 601423 3.2.2.29 +HGNC:11701 TDGF1 teratocarcinoma-derived growth factor 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "CRIPTO|CR|Cripto-1" 1990-08-02 2014-11-19 6997 ENSG00000241186 OTTHUMG00000133482 uc003cpv.4 M96955 NM_003212 "CCDS2742|CCDS54575" P13385 "1882841|10393436" MGI:98658 RGD:1594185 TDGF1 187395 138518 +HGNC:42350 TDGF1P1 teratocarcinoma-derived growth factor 1 pseudogene 1 pseudogene pseudogene Approved Xp11.4 Xp11.4 2011-06-24 2011-06-24 100421177 ENSG00000227988 OTTHUMG00000024089 NG_026672 PGOHUM00000241237 +HGNC:11702 TDGF1P2 teratocarcinoma-derived growth factor 1 pseudogene 2 pseudogene pseudogene Approved 2q36.3 02q36.3 "CR-2|CRIPTO-2" TDGF2 teratocarcinoma-derived growth factor 2, pseudogene 1999-09-28 2011-06-24 2011-06-24 2012-11-30 22816 ENSG00000183514 OTTHUMG00000153585 Y09998 NG_001244 10393436 PGOHUM00000240543 +HGNC:11703 TDGF1P3 teratocarcinoma-derived growth factor 1 pseudogene 3 pseudogene pseudogene Approved Xq23 Xq23 "TDGF2|CR-3|CRIPTO-3|CRIPTO3" TDGF3 teratocarcinoma-derived growth factor 3, pseudogene 1990-08-02 2011-06-24 2011-06-24 2014-11-18 6998 ENSG00000225366 OTTHUMG00000022195 M96956 NR_002718 P51864 1882841 +HGNC:11704 TDGF1P4 teratocarcinoma-derived growth factor 1 pseudogene 4 pseudogene pseudogene Approved 6p25.2 06p25.2 "CR-4|CRIPTO-4" TDGF4 teratocarcinoma-derived growth factor 4 (pseudogene) 1999-09-28 2011-06-24 2011-06-24 2012-11-30 22815 ENSG00000217566 OTTHUMG00000014153 Y09997 NG_001243 10393436 PGOHUM00000260147 +HGNC:11705 TDGF1P5 teratocarcinoma-derived growth factor 1 pseudogene 5 pseudogene pseudogene Approved 8q11.23 08q11.23 "CR-5|CRIPTO-5" TDGF5 teratocarcinoma-derived growth factor 5, pseudogene 1999-09-28 2011-06-24 2011-06-24 2011-06-24 22814 ENSG00000254274 OTTHUMG00000164314 Y09996 NG_001242 10393436 PGOHUM00000249665 +HGNC:11706 TDGF1P6 teratocarcinoma-derived growth factor 1 pseudogene 6 pseudogene pseudogene Approved 3q22.3 03q22.3 "CR-6|CRIPTO-6" TDGF6 teratocarcinoma-derived growth factor 6, pseudogene 1999-09-28 2011-06-24 2011-06-24 2014-11-19 22813 ENSG00000241438 OTTHUMG00000159794 NG_012350 10393436 PGOHUM00000238206 +HGNC:11707 TDGF1P7 teratocarcinoma-derived growth factor 1 pseudogene 7 pseudogene pseudogene Approved 19q13.2 19q13.2 "CR-7|CRIPTO-7" TDGF7 teratocarcinoma-derived growth factor 7, pseudogene 1999-09-28 2011-06-24 2011-06-24 2016-07-25 100129080 ENSG00000269584 OTTHUMG00000183070 NG_012349 10393436 PGOHUM00000295358 +HGNC:49891 TDGP1 thymine-DNA glycosylase pseudogene 1 pseudogene pseudogene Approved 12p12.1 12p12.1 2014-03-18 2014-03-18 645233 ENSG00000255725 OTTHUMG00000169086 NG_009608 PGOHUM00000239708 +HGNC:15547 TDH L-threonine dehydrogenase (pseudogene) pseudogene pseudogene Approved 8p23.1 08p23.1 "FLJ25033|SDR14E1P" short chain dehydrogenase/reductase family 14E, member 1 (pseudogene) L-threonine dehydrogenase Short chain dehydrogenase/reductase superfamily 743 2001-04-25 2013-09-26 2016-07-19 157739 ENSG00000154316 OTTHUMG00000165365 AJ301562 NM_152566 Q8IZJ6 "11896452|12361482|19027726" RGD:1310214 TDH 615174 +HGNC:11708 TDO2 tryptophan 2,3-dioxygenase protein-coding gene gene with protein product Approved 4q32.1 04q32.1 "TDO|TPH2" 1989-05-29 2016-01-15 6999 ENSG00000151790 OTTHUMG00000161838 uc003ipf.3 NM_005651 CCDS34086 P48775 MGI:1928486 RGD:68370 TDO2 191070 objectId:2887 1.13.11.11 +HGNC:11709 TDO2L1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-07-06 +HGNC:18884 TDP1 tyrosyl-DNA phosphodiesterase 1 protein-coding gene gene with protein product Approved 14q32.11 14q32.11 "FLJ11090|SCAN1" 2002-07-13 2008-08-11 55775 ENSG00000042088 OTTHUMG00000171016 uc001xxy.4 AF182002 NM_018319 "CCDS9888|CCDS81836" Q9NUW8 "11839309|12244316" MGI:1920036 RGD:1309618 TDP1 607198 120006 +HGNC:17768 TDP2 tyrosyl-DNA phosphodiesterase 2 protein-coding gene gene with protein product Approved 6p22.3 06p22.3 TTRAP TRAF and TNF receptor associated protein 2003-05-02 2010-05-07 2010-05-07 2016-10-05 51567 ENSG00000111802 OTTHUMG00000014360 uc003nej.4 AJ269473 NM_016614 CCDS4557 O95551 11478795 MGI:1860486 RGD:1560342 TDP2 605764 406901 3.1.4.- +HGNC:11712 TDRD1 tudor domain containing 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 CT41.1 cancer/testis antigen 41.1 Tudor domain containing 780 2000-06-16 2016-10-05 56165 ENSG00000095627 OTTHUMG00000019083 uc001lbg.1 AF285606 XM_011539959 CCDS7588 Q9BXT4 11279525 MGI:1933218 RGD:1306140 TDRD1 605796 +HGNC:20612 TDRD3 tudor domain containing 3 protein-coding gene gene with protein product Approved 13q21.2 13q21.2 FLJ21007 Tudor domain containing 780 2003-03-05 2016-10-05 81550 ENSG00000083544 OTTHUMG00000017007 uc001vhz.5 AK023578 NM_030794 "CCDS9441|CCDS53872" Q9H7E2 MGI:2444023 RGD:1310126 TDRD3 614392 +HGNC:20614 TDRD5 tudor domain containing 5 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "FLJ34823|TUDOR3" Tudor domain containing 780 2003-03-05 2016-10-05 163589 ENSG00000162782 OTTHUMG00000035259 uc021pfm.3 AK092142 NM_173533 "CCDS1332|CCDS55663" Q8NAT2 MGI:2684949 RGD:1307078 TDRD5 +HGNC:21339 TDRD6 tudor domain containing 6 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "NY-CO-45|bA446F17.4|CT41.2|SPATA36" "cancer/testis antigen 41.2|spermatogenesis associated 36" Tudor domain containing 780 2003-11-27 2014-11-19 221400 ENSG00000180113 OTTHUMG00000014788 uc010jze.3 AF039442 XM_166443 "CCDS34470|CCDS55017" O60522 9610721 MGI:2679727 RGD:1305956 TDRD6 611200 +HGNC:30831 TDRD7 tudor domain containing 7 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 PCTAIRE2BP Tudor domain containing 780 2004-04-01 2015-08-26 23424 ENSG00000196116 OTTHUMG00000020326 uc004axj.4 AB025254 NM_014290 CCDS6725 Q8NHU6 21436445 MGI:2140279 RGD:619724 TDRD7 611258 +HGNC:20122 TDRD9 tudor domain containing 9 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "DKFZp434N0820|FLJ36164|NET54" C14orf75 chromosome 14 open reading frame 75 Tudor domain containing 780 2002-12-18 2004-04-02 2004-04-01 2015-08-26 122402 ENSG00000156414 OTTHUMG00000152876 uc001yom.5 AK093483 NM_153046 CCDS9987 Q8NDG6 MGI:1921941 RGD:1306942 TDRD9 +HGNC:25316 TDRD10 tudor domain containing 10 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 DKFZp434M202 "RNA binding motif containing|Tudor domain containing" "725|780" 2005-05-31 2014-11-18 126668 ENSG00000163239 OTTHUMG00000037264 uc001ffd.3 AL713777 NM_182499 "CCDS30878|CCDS41406" Q5VZ19 12975309 TDRD10 +HGNC:25044 TDRD12 tudor domain containing 12 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "ECAT8|FLJ13072" Tudor domain containing 780 2007-11-15 2013-01-23 91646 ENSG00000173809 OTTHUMG00000177230 uc002ntq.3 AK023134 NM_001015890 CCDS46038 Q587J7 11441184 MGI:1919231 RGD:1562792 TDRD12 +HGNC:45037 TDRD15 tudor domain containing 15 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 Tudor domain containing 780 2013-01-22 2013-01-23 2013-01-23 2013-01-23 100129278 ENSG00000218819 OTTHUMG00000151795 uc061gzs.1 XR_001738578 CCDS77385 B5MCY1 RGD:7716193 +HGNC:43642 TDRG1 testis development related 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.2 06p21.2 "LINC00532|lincRNA-NR_024015" long intergenic non-protein coding RNA 532 Long non-coding RNAs 788 2011-12-13 2011-12-13 2014-09-25 732253 ENSG00000204091 OTTHUMG00000014660 uc063oiu.1 DQ168992 NR_024015 "19403381|22123530|24595048" 615676 +HGNC:11713 TDRKH tudor and KH domain containing protein-coding gene gene with protein product Approved 1q21.3 01q21.3 TDRD2 tudor and KH domain containing Tudor domain containing 780 1999-01-22 2003-11-07 2016-10-05 11022 ENSG00000182134 OTTHUMG00000013062 uc009wnb.2 AF227192 NM_006862 "CCDS41394|CCDS41395" Q9Y2W6 10767542 MGI:1919884 RGD:1311196 TDRKH 609501 +HGNC:26951 TDRP testis development related protein protein-coding gene gene with protein product Approved 8p23.3 08p23.3 "INM01|TDRP1|TDRP2" C8orf42 chromosome 8 open reading frame 42 2005-07-28 2013-06-03 2013-06-03 2015-08-26 157695 ENSG00000180190 OTTHUMG00000163593 AY194292 NM_175075 "CCDS47759|CCDS59090" Q86YL5 20170638 MGI:1919398 RGD:1559733 +HGNC:11714 TEAD1 TEA domain transcription factor 1 protein-coding gene gene with protein product Approved 11p15.3 11p15.3 TEF-1 "TCF13|AA" "atrophia areata, peripapillary chorioretinal degeneration|TEA domain family member 1 (SV40 transcriptional enhancer factor)" TEA domain transcription factors 1183 1994-09-22 2016-01-15 2016-04-25 7003 ENSG00000187079 OTTHUMG00000165878 uc021qdx.2 X84839 NM_021961 CCDS7810 P28347 "1851669|9889009|15016762" MGI:101876 RGD:1549742 TEAD1 189967 120010 +HGNC:11715 TEAD2 TEA domain transcription factor 2 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 "TEF-4|ETF|TEF4" TEA domain family member 2 TEA domain transcription factors 1183 1998-10-09 2016-01-15 2016-01-15 8463 ENSG00000074219 OTTHUMG00000183174 uc002pnj.5 X94440 NM_003598 "CCDS12761|CCDS58670|CCDS58671|CCDS59406" Q15562 "9889009|8702974" MGI:104904 RGD:1593252 TEAD2 601729 +HGNC:11716 TEAD3 TEA domain transcription factor 3 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "TEF-5|ETFR-1" TEAD5 TEA domain family member 3 TEA domain transcription factors 1183 1998-08-10 2016-01-15 2016-10-05 7005 ENSG00000007866 OTTHUMG00000014571 uc063obu.1 X94439 NM_003214 CCDS47414 Q99594 "9889009|9148898" MGI:109241 RGD:1311583 TEAD3 603170 +HGNC:11717 TEAD4 TEA domain transcription factor 4 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "TEF-3|TEFR-1|EFTR-2|RTEF-1" TCF13L1 TEA domain family member 4 TEA domain transcription factors 1183 1996-08-02 2016-01-15 2016-01-15 7004 ENSG00000197905 OTTHUMG00000168153 uc058jww.1 X94438 NM_003213 "CCDS31729|CCDS31730|CCDS41737" Q15561 "9889009|8921372" MGI:106907 RGD:1585671 TEAD4 601714 +HGNC:11719 TEC tec protein tyrosine kinase protein-coding gene gene with protein product Approved 4p12-p11 04p12-p11 PSCTK4 "Pleckstrin homology domain containing|SH2 domain containing" "682|741" 1994-12-15 2016-10-11 7006 ENSG00000135605 OTTHUMG00000128623 uc003gxz.4 D29767 XM_011513737 CCDS3481 P42680 7934162 MGI:98662 RGD:620973 TEC 600583 objectId:2238 +HGNC:22214 TECPR1 tectonin beta-propeller repeat containing 1 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "DKFZP434B0335|FLJ23419|FLJ90593|KIAA1358" 2009-01-30 2014-11-19 25851 ENSG00000205356 OTTHUMG00000154273 uc003upg.5 NM_015395 CCDS47648 Q7Z6L1 MGI:1917631 RGD:1306873 TECPR1 614781 +HGNC:19957 TECPR2 tectonin beta-propeller repeat containing 2 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 KIAA0329 KIAA0329 2003-11-21 2009-02-27 2009-02-27 2015-08-26 9895 ENSG00000196663 OTTHUMG00000171776 uc001ylw.2 AB019441 NM_014844 "CCDS32162|CCDS58337" O15040 9205841 MGI:2144865 RGD:1307503 TECPR2 615000 321589 +HGNC:4551 TECR trans-2,3-enoyl-CoA reductase protein-coding gene gene with protein product Approved 19p13.12 19p13.12 "TER|MRT14" "SC2|GPSN2" glycoprotein, synaptic 2 1999-07-22 2009-07-21 2009-07-21 2014-11-19 9524 ENSG00000099797 OTTHUMG00000183290 uc002mza.4 AK001416 NM_138501 CCDS12313 Q9NZ01 "9653160|12482854" MGI:1915408 RGD:620376 TECR 610057 265497 +HGNC:27365 TECRL trans-2,3-enoyl-CoA reductase-like protein-coding gene gene with protein product Approved 4q13.1 04q13.1 "GPSN2L|SRD5A2L2|DKFZp313D0829|DKFZp313B2333|TERL" glycoprotein, synaptic 2-like 2009-07-21 2014-11-19 253017 ENSG00000205678 OTTHUMG00000160680 uc003hcv.4 AL833108 NM_001010874 CCDS33990 Q5HYJ1 12477932 MGI:2444966 RGD:1304608 TECRL +HGNC:44050 TECRP1 trans-2,3-enoyl-CoA reductase pseudogene 1 pseudogene pseudogene Approved 4q21.3 04q21.3 2012-05-30 2014-11-19 442777 ENSG00000235043 OTTHUMG00000160969 NG_005327 +HGNC:44051 TECRP2 trans-2,3-enoyl-CoA reductase pseudogene 2 pseudogene pseudogene Approved 4q28.1 04q28.1 2012-05-30 2014-11-19 391696 ENSG00000248565 OTTHUMG00000161388 NG_005322 PGOHUM00000245691 +HGNC:11720 TECTA tectorin alpha protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "DFNA12|DFNA8|DFNB21" 1997-08-22 2016-10-05 7007 ENSG00000109927 OTTHUMG00000149908 uc058imn.1 AF055136 NM_005422 CCDS8434 O75443 "9503015|9590290" MGI:109575 RGD:1309824 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org TECTA 602574 120015 +HGNC:11721 TECTB tectorin beta protein-coding gene gene with protein product Approved 10q25.2 10q25.2 1997-08-22 2016-10-05 6975 ENSG00000119913 OTTHUMG00000019056 uc001kzr.3 AF312827 NM_058222 CCDS7571 Q96PL2 9079715 MGI:109574 RGD:1305835 TECTB 602653 +HGNC:30233 TEDDM1 transmembrane epididymal protein 1 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "HE9|Epdd1|TMEM45C|EDDM9" "putative membrane protein HE9|transmembrane protein 45C|epididymal protein 9" 2005-06-03 2005-08-09 2014-11-19 127670 ENSG00000203730 OTTHUMG00000037398 uc001gpe.3 AJ515384 NM_172000 CCDS30953 Q5T9Z0 MGI:2668439 RGD:1586783 TEDDM1 +HGNC:42447 TEDDM2P transmembrane epididymal protein 2, pseudogene pseudogene pseudogene Approved 1q25.3 01q25.3 TEDDM1P1 transmembrane epididymal protein 1 pseudogene 1 2011-07-28 2014-06-30 2014-06-30 2014-06-30 127671 ENSG00000233537 OTTHUMG00000037405 NG_030210 MGI:1923273 PGOHUM00000245115 +HGNC:11722 TEF TEF, PAR bZIP transcription factor protein-coding gene gene with protein product Approved 22q13.2 22q13.2 KIAA1655 thyrotrophic embryonic factor PAR bZIP family 1248 1994-07-04 2016-04-27 2016-04-27 7008 ENSG00000167074 OTTHUMG00000150968 uc003azy.5 NM_003216 "CCDS14014|CCDS46716" Q10587 "7835883|15665112" MGI:98663 RGD:3841 TEF 188595 +HGNC:26223 TEFM transcription elongation factor, mitochondrial protein-coding gene gene with protein product Approved 17q11.2 17q11.2 FLJ22729 C17orf42 chromosome 17 open reading frame 42 2005-05-24 2011-12-12 2011-12-12 2016-04-04 79736 ENSG00000172171 OTTHUMG00000179029 uc002hfu.3 NM_024683 CCDS42291 Q96QE5 "11468690|10843809|21278163|25690892" MGI:1915800 RGD:1306595 616422 +HGNC:11724 TEK TEK receptor tyrosine kinase protein-coding gene gene with protein product Approved 9p21.2 09p21.2 "TIE2|TIE-2|VMCM1|CD202b" VMCM "venous malformations, multiple cutaneous and mucosal|TEK tyrosine kinase, endothelial" "Receptor Tyrosine Kinases|CD molecules|Fibronectin type III domain containing|Immunoglobulin like domain containing" "321|471|555|594" 1994-05-24 2016-01-20 2016-10-05 7010 ENSG00000120156 OTTHUMG00000019712 uc003zqi.5 L06139 XM_005251561 "CCDS6519|CCDS75825|CCDS78389" Q02763 "1312667|7833915" MGI:98664 RGD:620980 TEK 600221 120020 objectId:1842 CD202b +HGNC:15534 TEKT1 tektin 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 Tektins 949 2001-04-25 2016-10-05 83659 ENSG00000167858 OTTHUMG00000102063 uc002gdt.4 NM_053285 CCDS11083 Q969V4 11606253 MGI:1333819 RGD:619913 TEKT1 609002 +HGNC:11725 TEKT2 tektin 2 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 TEKTB1 tektin 2 (testicular) Tektins 949 2000-02-16 2016-01-25 2016-01-25 27285 ENSG00000092850 OTTHUMG00000007629 uc001bzr.3 AB033823 NM_014466 CCDS401 Q9UIF3 "12029069|11751288" MGI:1346335 RGD:1311065 TEKT2 608953 +HGNC:14293 TEKT3 tektin 3 protein-coding gene gene with protein product Approved 17p12 17p12 FLJ32828 Tektins 949 2000-12-22 2014-11-19 64518 ENSG00000125409 OTTHUMG00000058965 uc002gon.4 AF334676 NM_031898 CCDS11169 Q9BXF9 "11381029|14735490" MGI:1918312 RGD:1310582 TEKT3 612683 +HGNC:31012 TEKT4 tektin 4 protein-coding gene gene with protein product Approved 2q11.1 02q11.1 MGC27019 Tektins 949 2005-12-06 2016-10-05 150483 ENSG00000163060 OTTHUMG00000130396 uc002stw.3 AK097438 NM_144705 CCDS2005 Q8WW24 MGI:1919090 RGD:1308075 TEKT4 +HGNC:37711 TEKT4P1 tektin 4 pseudogene 1 pseudogene pseudogene Approved Yq11.1 Yq11.1 2010-02-03 2014-11-19 727768 XM_002344445 PGOHUM00000233737 +HGNC:40046 TEKT4P2 tektin 4 pseudogene 2 pseudogene pseudogene Approved 21p11.2 21p11.2 MAFIPL MAFF interacting protein-like 2011-05-23 2011-06-14 2011-06-14 2014-11-19 100132288 ENSG00000188681 OTTHUMG00000172149 NM_001033515 PGOHUM00000238998 +HGNC:42330 TEKT4P3 tektin 4 pseudogene 3 pseudogene pseudogene Approved 2q21.1 02q21.1 2011-06-14 2011-06-14 100873355 NG_032509 PGOHUM00000240298 +HGNC:26554 TEKT5 tektin 5 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "FLJ32871|CT149" Tektins 949 2007-01-19 2014-11-19 146279 ENSG00000153060 OTTHUMG00000129750 uc002czz.2 NM_144674 CCDS10542 Q96M29 MGI:1917676 RGD:1307081 TEKT5 +HGNC:20680 TELAB1 telangiectasia, benign 1 phenotype phenotype only Approved 5q14 05q14 2003-03-14 2005-03-30 338411 14627680 187260 +HGNC:29099 TELO2 telomere maintenance 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "KIAA0683|hCLK2|TEL2" TEL2, telomere maintenance 2, homolog (S. cerevisiae) TTT complex 1320 2006-09-25 2013-08-06 2014-11-19 9894 ENSG00000100726 OTTHUMG00000044471 uc002cly.4 AL080126 NM_016111 CCDS32363 Q9Y4R8 "9734811|11230166|12670948" MGI:1918968 RGD:1305553 TELO2 611140 +HGNC:37242 TEN1 TEN1, CST complex subunit protein-coding gene gene with protein product Approved 17q25.1 17q25.1 FLJ39785 C17orf106 "chromosome 17 open reading frame 106|TEN1 telomerase capping complex subunit homolog (S. cerevisiae)|TEN1 CST complex subunit" CST complex 1343 2009-09-10 2011-06-14 2016-10-04 2016-10-04 100134934 ENSG00000257949 OTTHUMG00000132686 uc060kgd.1 NM_001113324 CCDS45780 Q86WV5 19854130 MGI:1916785 RGD:1311078 TEN1 613130 +HGNC:44420 TEN1-CDK3 TEN1-CDK3 readthrough (NMD candidate) other readthrough Approved 17q25.1 17q25.1 TEN1-CDK3 readthrough (non-protein coding) 2012-10-08 2013-05-09 2013-05-09 100529145 ENSG00000261408 OTTHUMG00000170136 uc010dgt.3 NR_037709 +HGNC:8117 TENM1 teneurin transmembrane protein 1 protein-coding gene gene with protein product Approved Xq25 Xq25 TEN-M1 "ODZ3|TNM|ODZ1" "tenascin M|odz, odd Oz/ten-m homolog 1 (Drosophila)" 1999-06-21 2012-10-02 2012-10-02 2015-09-08 10178 ENSG00000009694 OTTHUMG00000022721 uc004euj.4 AF100772 NM_014253 "CCDS14609|CCDS55488" Q9UKZ4 "10331952|10341219" MGI:1345185 RGD:1561678 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ODZ1 TENM1 300588 +HGNC:29943 TENM2 teneurin transmembrane protein 2 protein-coding gene gene with protein product Approved 5q34 05q34 "KIAA1127|Ten-M2" ODZ2 odz, odd Oz/ten-m homolog 2 (Drosophila) 2004-06-24 2012-10-02 2012-10-02 2016-10-05 57451 ENSG00000145934 OTTHUMG00000162928 uc031slx.2 AB032953 NM_001122679 CCDS83040 Q9NT68 10625539 MGI:1345184 RGD:727907 TENM2 610119 +HGNC:29944 TENM3 teneurin transmembrane protein 3 protein-coding gene gene with protein product Approved 4q34.3-q35.1 04q34.3-q35.1 "Ten-M3|KIAA1455" ODZ3 odz, odd Oz/ten-m homolog 3 (Drosophila) 2004-06-24 2012-10-02 2012-10-02 2016-10-11 55714 ENSG00000218336 OTTHUMG00000160682 uc003ivd.2 AF195420 XM_017008385 CCDS47165 Q9P273 "10331952|10625539" MGI:1345183 RGD:1306641 610083 308222 +HGNC:29945 TENM4 teneurin transmembrane protein 4 protein-coding gene gene with protein product Approved 11q13 11q13 "KIAA1302|Ten-M4" ODZ4 odz, odd Oz/ten-m homolog 4 (Drosophila) 2004-06-24 2012-10-02 2012-10-02 2012-10-02 26011 ENSG00000149256 uc001ozl.5 AB037723 XM_017017525 CCDS44688 Q6N022 "12000766|10625539" MGI:2447063 RGD:1304658 610084 448840 +HGNC:11726 TEP1 telomerase associated protein 1 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "TP1|TLP1|VAULT2|p240|TROVE1" TROVE domain family, member 1 WD repeat domain containing 362 1997-09-05 2016-01-19 2016-01-19 7011 ENSG00000129566 OTTHUMG00000029515 uc001vxe.4 NM_007110 "CCDS9548|CCDS81789" Q99973 9403057 MGI:109573 RGD:3869 TEP1 601686 +HGNC:33745 TEPP testis, prostate and placenta expressed protein-coding gene gene with protein product Approved 16q21 16q21 2009-04-20 2016-10-05 374739 ENSG00000159648 OTTHUMG00000133463 uc002emv.5 BC104458 NM_199456 "CCDS10790|CCDS45496" Q6URK8 14652002 MGI:1920657 RGD:735198 TEPP 610264 +HGNC:26458 TEPSIN TEPSIN, adaptor related protein complex 4 accessory protein protein-coding gene gene with protein product Approved 17q25.3 17q25.3 FLJ31528 AP-4 accessory protein "C17orf56|ENTHD2" "chromosome 17 open reading frame 56|ENTH domain containing 2" 2005-12-15 2016-06-07 2016-06-07 2016-06-07 146705 ENSG00000167302 OTTHUMG00000177866 uc002jzu.2 AK056090 NM_144679 CCDS11779 Q96N21 22472443 MGI:1926027 RGD:1307410 +HGNC:26675 TERB1 telomere repeat binding bouquet formation protein 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 FLJ35894 CCDC79 coiled-coil domain containing 79 Myb/SANT domain containing 532 2006-08-22 2016-05-17 2016-05-17 2016-05-17 283847 ENSG00000249961 OTTHUMG00000133562 uc010viv.2 AK093213 XM_011523004 Q8NA31 24413433 MGI:2443187 RGD:1310400 +HGNC:28520 TERB2 telomere repeat binding bouquet formation protein 2 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 MGC33951 C15orf43 chromosome 15 open reading frame 43 2006-01-17 2016-05-17 2016-05-17 2016-05-17 145645 ENSG00000167014 OTTHUMG00000131264 uc001zuk.5 BC029537 NM_152448 CCDS10115 Q8NHR7 26548954 MGI:1921651 RGD:1593334 617131 +HGNC:11727 TERC telomerase RNA component non-coding RNA RNA, misc Approved 3q26.2 03q26.2 "TR|hTR|TRC3|SCARNA19" small Cajal body-specific RNA 19 1997-07-25 2016-10-12 7012 ENSG00000270141 OTTHUMG00000184024 uc003ffr.2 "U86046|AF221907" NR_001566 "7544491|16319170" RGD:727802 LRG_347|http://www.lrg-sequence.org/LRG/LRG_347 602322 SR0000311 138457 +HGNC:11728 TERF1 telomeric repeat binding factor 1 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 "PIN2|TRF1|TRF" TRBF1 telomeric repeat binding factor (NIMA-interacting) 1 "Myb/SANT domain containing|Shelterin complex" "532|1334" 1997-11-20 2016-02-26 2016-02-26 7013 ENSG00000147601 OTTHUMG00000164522 uc003xzd.3 U74382 NM_017489 "CCDS6210|CCDS6211" P54274 9391075 MGI:109634 RGD:1311574 TERF1 600951 +HGNC:16733 TERF1P1 telomeric repeat binding factor 1 pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 TERF1P telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 2003-10-01 2010-05-18 2016-02-26 2016-10-05 348567 ENSG00000173231 OTTHUMG00000074234 NG_003158 PGOHUM00000239134 +HGNC:38110 TERF1P2 telomeric repeat binding factor 1 pseudogene 2 pseudogene pseudogene Approved 18p11 18p11 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 2 2010-05-18 2016-02-26 2016-02-26 646359 ENSG00000187589 OTTHUMG00000178678 NG_023014 +HGNC:38499 TERF1P3 telomeric repeat binding factor 1 pseudogene 3 pseudogene pseudogene Approved 4q28.3 04q28.3 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 3 2010-05-18 2016-02-26 2016-10-05 646316 ENSG00000249311 OTTHUMG00000161240 XR_038210 PGOHUM00000245704 +HGNC:38500 TERF1P4 telomeric repeat binding factor 1 pseudogene 4 pseudogene pseudogene Approved Xq21.1 Xq21.1 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 4 2010-05-18 2016-02-26 2016-10-05 648283 ENSG00000215102 OTTHUMG00000021921 NG_022613 PGOHUM00000241417 +HGNC:39686 TERF1P5 telomeric repeat binding factor 1 pseudogene 5 pseudogene pseudogene Approved 13q11 13q11 telomeric repeat binding factor (NIMA-interacting) 1 pseudogene 5 2011-03-23 2016-02-26 2016-02-26 283523 ENSG00000226361 OTTHUMG00000016455 NG_011338 PGOHUM00000248500 +HGNC:11729 TERF2 telomeric repeat binding factor 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 TRF2 TRBF2 "Myb/SANT domain containing|Shelterin complex" "532|1334" 1997-11-20 2016-04-25 7014 ENSG00000132604 OTTHUMG00000137566 uc002exd.5 XM_005256121 CCDS10879 Q15554 "9326950|10226653" MGI:1195972 RGD:1310881 TERF2 602027 +HGNC:19246 TERF2IP TERF2 interacting protein protein-coding gene gene with protein product Approved 16q23.1 16q23.1 RAP1 telomeric repeat binding factor 2, interacting protein Shelterin complex 1334 2002-09-18 2016-02-26 2016-10-12 54386 ENSG00000166848 OTTHUMG00000177136 uc002fet.3 AK000669 NM_018975 CCDS32491 Q9NYB0 10850490 MGI:1929871 RGD:1309684 LRG_1084|http://www.lrg-sequence.org/LRG/LRG_1084 TERF2IP 605061 451445 +HGNC:19258 TERF2IPP1 TERF2 interacting protein pseudogene 1 pseudogene pseudogene Approved 22q11.2 22q11.2 telomeric repeat binding factor 2, interacting protein pseudogene 1 2002-09-18 2016-02-26 2016-02-26 644899 NG_017137 +HGNC:11730 TERT telomerase reverse transcriptase protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "TRT|TP2|TCS1|hEST2|EST2" 1998-01-21 2016-10-12 7015 ENSG00000164362 OTTHUMG00000090357 uc003jcb.2 AF015950 XM_017009796 "CCDS3861|CCDS54831" O14746 9252327 MGI:1202709 RGD:70494 LRG_343|http://www.lrg-sequence.org/LRG/LRG_343 TERT 187270 138451 +HGNC:14620 TES testin LIM domain protein protein-coding gene gene with protein product Approved 7q31.2 07q31.2 "DKFZP586B2022|TESS-2|TESTIN" testis derived transcript (3 LIM domains) LIM domain containing 1218 2001-06-29 2015-02-13 2015-02-13 26136 ENSG00000135269 OTTHUMG00000023092 uc003vho.3 AJ250865 NM_015641 "CCDS5763|CCDS5764" Q9UGI8 10950921 MGI:105081 RGD:1566346 TES 606085 +HGNC:26065 TESC tescalcin protein-coding gene gene with protein product Approved 12q24.22 12q24.22 "TSC|FLJ20607|CHP3" calcineurin-like EF hand protein 3 EF-hand domain containing 863 2006-02-07 2016-04-25 54997 ENSG00000088992 OTTHUMG00000144168 uc001twh.4 AF443207 NM_017899 "CCDS53835|CCDS9183" Q96BS2 "11145610|11696366|12809501|14661968" MGI:1930803 RGD:1566317 TESC 611585 +HGNC:51142 TESC-AS1 TESC antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 12q24.22 12q24.22 2014-07-30 2014-07-30 2014-07-30 101928244 ENSG00000258285 OTTHUMG00000169494 NR_120464 +HGNC:11731 TESK1 testis-specific kinase 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "testis-specific kinase-1|testis specific kinase-1" 1997-08-28 2016-10-05 7016 ENSG00000107140 OTTHUMG00000019863 uc064swy.1 D50863 NM_006285 CCDS6580 Q15569 8537404 MGI:1201675 RGD:62059 TESK1 601782 objectId:2239 2.7.12.1 +HGNC:11732 TESK2 testis-specific kinase 2 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 1999-06-18 2016-10-05 10420 ENSG00000070759 OTTHUMG00000007680 uc001cns.2 AJ132545 NM_007170 CCDS41323 Q96S53 10512679 MGI:2385204 RGD:619984 TESK2 604746 objectId:2240 2.7.12.1 +HGNC:7446 TESMIN testis expressed metallothionein like protein protein-coding gene gene with protein product Approved 11q13.3 11q13.3 CXCDC2 CXC domain containing 2 MTL5 metallothionein-like 5, testis-specific (tesmin) 1999-02-08 2016-04-29 2016-04-29 2016-04-29 9633 ENSG00000132749 OTTHUMG00000167891 uc001ooc.4 U86074 NM_004923 "CCDS8184|CCDS44661" Q9Y4I5 1091092 MGI:1340029 RGD:1309788 604374 +HGNC:29109 TESPA1 thymocyte expressed, positive selection associated 1 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 KIAA0748 KIAA0748 2006-01-24 2012-03-21 2012-03-21 2012-03-21 9840 ENSG00000135426 OTTHUMG00000165407 uc010spd.3 AB018291 NM_001098815 "CCDS44913|CCDS58240" A2RU30 9872452 MGI:1914846 615664 +HGNC:29484 TET1 tet methylcytosine dioxygenase 1 protein-coding gene gene with protein product Approved 10q21.3 10q21.3 "LCX|KIAA1676|bA119F7.1" "leukemia-associated protein with a CXXC domain|ten-eleven translocation-1" CXXC6 "CXXC zinc finger 6|tet oncogene 1" Zinc fingers CXXC-type 136 2004-02-18 2008-03-12 2011-09-30 2016-10-05 80312 ENSG00000138336 OTTHUMG00000018359 uc001jok.5 AF430147 NM_030625 CCDS7281 Q8NFU7 "12124344|12646957" MGI:1098693 RGD:1310993 TET1 607790 +HGNC:33586 TET1P1 tet methylcytosine dioxygenase 1 pseudogene 1 pseudogene pseudogene Approved 13q31.2 13q31.2 CXXC6P1 "CXXC zinc finger 6 pseudogene 1|tet oncogene 1 pseudogene 1" 2007-08-08 2009-12-17 2011-09-30 2011-12-01 441662 ENSG00000232204 OTTHUMG00000017168 NG_006594 PGOHUM00000248454 +HGNC:25941 TET2 tet methylcytosine dioxygenase 2 protein-coding gene gene with protein product Approved 4q24 04q24 FLJ20032 KIAA1546 "KIAA1546|tet oncogene family member 2" 2006-06-20 2008-03-12 2011-09-30 2016-10-12 54790 ENSG00000168769 OTTHUMG00000131213 uc021xqk.1 AB046766 NM_017628 "CCDS3666|CCDS47120" Q6N021 "10997877|12646957" MGI:2443298 RGD:1311625 LRG_626|http://www.lrg-sequence.org/LRG/LRG_626 TET2 612839 268325 +HGNC:41125 TET2-AS1 TET2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q24 04q24 TET2 antisense RNA 1 (non-protein coding) 2011-09-30 2012-08-15 2014-11-19 104384744 ENSG00000251586 OTTHUMG00000160996 uc062ysg.1 NR_126420 +HGNC:28313 TET3 tet methylcytosine dioxygenase 3 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "MGC22014|hCG_40738" tet oncogene family member 3 Zinc fingers CXXC-type 136 2008-03-12 2011-09-30 2016-04-25 200424 ENSG00000187605 OTTHUMG00000152823 uc002skb.6 XM_011532682 CCDS46339 O43151 "9455477|23697932" MGI:2446229 RGD:1590584 TET3 613555 +HGNC:30884 TEX2 testis expressed 2 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "HT008|TMEM96|KIAA1738" transmembrane protein 96 testis expressed sequence 2 2005-12-15 2007-03-13 2014-11-18 55852 ENSG00000136478 OTTHUMG00000178881 uc002jed.5 AB051525 NM_018469 "CCDS11658|CCDS74131" Q8IWB9 11214970 MGI:102465 RGD:1305112 TEX2 +HGNC:29585 TEX9 testis expressed 9 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 testis expressed sequence 9 2005-07-21 2007-03-13 2014-11-19 374618 ENSG00000151575 OTTHUMG00000132035 uc002adp.5 BC028119 NM_198524 "CCDS10157|CCDS66776" Q8N6V9 MGI:1201610 RGD:1304772 TEX9 +HGNC:25988 TEX10 testis expressed 10 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "FLJ20287|bA208F1.2|Ipi1" "testis expressed gene 10|testis expressed sequence 10" 5FMC ribosome biogenesis complex 1301 2004-02-13 2007-03-13 2014-11-19 54881 ENSG00000136891 OTTHUMG00000020366 uc004bas.4 AB060968 NM_017746 "CCDS6748|CCDS55330" Q9NXF1 12477932 MGI:1344413 RGD:1312045 TEX10 616717 +HGNC:11733 TEX11 testis expressed 11 protein-coding gene gene with protein product Approved Xp11 Xp11 "TSGA3|TGC1" testis expressed sequence 11 2000-06-16 2007-03-13 2014-11-19 56159 ENSG00000120498 OTTHUMG00000021782 uc004dyl.4 AF285594 XM_017029649 "CCDS35323|CCDS43968" Q8IYF3 11279525 MGI:1933237 RGD:1560239 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TEX11 TEX11 300311 431878 +HGNC:11734 TEX12 testis expressed 12 protein-coding gene gene with protein product Approved 11q23.1 11q23.1 testis expressed sequence 12 2000-06-16 2007-03-13 2014-11-19 56158 ENSG00000150783 OTTHUMG00000167008 uc001pnc.4 AF285600 NM_031275 CCDS31679 Q9BXU0 11279525 MGI:1913904 RGD:1597300 TEX12 605791 +HGNC:11735 TEX13A testis expressed 13A protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 testis expressed sequence 13A Zinc fingers RANBP2-type 89 2000-06-16 2007-03-13 2016-10-05 56157 ENSG00000268629 OTTHUMG00000022133 uc033epz.1 AF285597 NM_031274 CCDS76005 Q9BXU3 11279525 MGI:1915194 RGD:2323888 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TEX13A TEX13A 300312 +HGNC:11736 TEX13B testis expressed 13B protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "TSGA5|TGC3B" testis expressed sequence 13B 2000-06-16 2007-03-13 2015-09-08 56156 ENSG00000170925 OTTHUMG00000022174 uc004enn.1 AF285598 NM_031273 CCDS14534 Q9BXU2 11279525 MGI:1890544 RGD:1587018 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TEX13B TEX13B 300313 +HGNC:52277 TEX13C TEX13 family member C protein-coding gene gene with protein product Approved Xq25 Xq25 2015-12-14 2015-12-14 100129520 ENSG00000282815 OTTHUMG00000191426 XM_005262352 CCDS83488 A0A0J9YWL9 MGI:2685208 RGD:1563975 +HGNC:52278 TEX13D TEX13 family member D other unknown Approved Xq25 Xq25 2015-12-14 2015-12-14 100132015 ENSG00000282419 OTTHUMG00000190648 NG_022700 MGI:3780650 +HGNC:11737 TEX14 testis expressed 14, intercellular bridge forming factor protein-coding gene gene with protein product Approved 17q22 17q22 CT113 cancer/testis antigen 113 "testis expressed sequence 14|testis expressed 14" 2000-06-16 2016-05-06 2016-05-06 56155 ENSG00000121101 OTTHUMG00000179245 uc010dcz.3 AF285601 XM_011525029 "CCDS32692|CCDS32693|CCDS56042" Q8IWB6 "11279525|12711554|26392564" MGI:1933227 RGD:1305437 TEX14 605792 objectId:2241 +HGNC:11738 TEX15 testis expressed 15 protein-coding gene gene with protein product Approved 8p22 08p22 CT42 cancer/testis antigen 42 testis expressed sequence 15 2000-06-16 2007-03-13 2014-11-19 56154 ENSG00000133863 OTTHUMG00000163881 uc003xil.4 AF285605 XM_011544588 CCDS6080 Q9BXT5 11279525 MGI:1934816 RGD:1311266 TEX15 605795 +HGNC:37957 TEX16P testis expressed 16, pseudogene pseudogene pseudogene Approved Xq21.1 Xq21.1 2010-03-12 2014-11-19 100499435 NG_023465 20210993 MGI:1890545 RGD:1559987 +HGNC:33802 TEX19 testis expressed 19 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 FLJ35767 2009-04-14 2016-04-04 400629 ENSG00000182459 OTTHUMG00000132857 uc002keq.3 BC016939 NM_207459 CCDS11809 Q8NA77 "23674551|18096721" "MGI:1918206|MGI:1920929" RGD:1588608 TEX19 615647 +HGNC:35455 TEX21P testis expressed 21, pseudogene pseudogene pseudogene Approved 14q23.3 14q23.3 2010-03-12 2016-10-05 441687 ENSG00000234911 OTTHUMG00000154262 XR_018333 20210993 MGI:1931131 +HGNC:40026 TEX22 testis expressed 22 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 2011-05-05 2011-05-05 647310 ENSG00000226174 OTTHUMG00000156137 uc001yqw.3 XM_006720234 CCDS53916 C9J3V5 MGI:1922921 RGD:1597257 +HGNC:28622 TEX26 testis expressed 26 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 MGC40178 C13orf26 chromosome 13 open reading frame 26 2006-04-03 2012-02-06 2012-02-06 2014-11-19 122046 ENSG00000175664 OTTHUMG00000016682 uc001uti.4 BC030277 NM_152325 CCDS9339 Q8N6G2 12477932 MGI:1923110 RGD:1560846 +HGNC:42784 TEX26-AS1 TEX26 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.3 13q12.3 LINC00447 "long intergenic non-protein coding RNA 447|TEX26 antisense RNA 1 (non-protein coding)" 2011-08-18 2012-02-06 2012-08-15 2014-11-19 100507064 ENSG00000224743 OTTHUMG00000016681 uc001utg.3 BC042736 NR_038288 +HGNC:2563 TEX28 testis expressed 28 protein-coding gene gene with protein product Approved Xq28 Xq28 fTEX CXorf2 chromosome X open reading frame 2 1998-08-06 2007-03-13 2007-03-13 2016-04-25 1527 ENSG00000278057 OTTHUMG00000022654 uc033fbb.1 U93720 NM_001586 CCDS14744 O15482 "9268643|15378397" MGI:2686384 RGD:1582832 TEX28 300092 +HGNC:33356 TEX28P1 testis expressed 28 pseudogene 1 pseudogene pseudogene Approved Xq28 Xq28 pTEX 2007-03-13 2015-02-02 728447 ENSG00000274962 OTTHUMG00000024230 NG_005787 O15482 15378397 TEX28P1 PGOHUM00000304912 +HGNC:33357 TEX28P2 testis expressed 28 pseudogene 2 pseudogene pseudogene Approved Xq28 Xq28 "pTEX|CXorf2B" 2007-03-13 2015-02-02 653363 ENSG00000277008 OTTHUMG00000022713 XM_927078 O15482 "15378397|16382448" TEX28P2 PGOHUM00000304911 +HGNC:20370 TEX29 testis expressed 29 protein-coding gene gene with protein product Approved 13q34 13q34 "bA474D23.1|MGC35169" C13orf16 chromosome 13 open reading frame 16 2004-04-16 2012-02-07 2012-02-07 2014-11-19 121793 ENSG00000153495 OTTHUMG00000017358 uc001vsa.3 BC029889 NM_152324 CCDS9522 Q8N6K0 MGI:1922778 RGD:1565377 +HGNC:25188 TEX30 testis expressed 30 protein-coding gene gene with protein product Approved 13q33.1 13q33.1 C13orf27 chromosome 13 open reading frame 27 2006-08-04 2012-02-09 2012-02-09 2014-11-18 93081 ENSG00000151287 OTTHUMG00000017306 uc001vpo.5 AF070559 NM_138779 "CCDS9503|CCDS66577|CCDS66578" Q5JUR7 MGI:1922873 RGD:1309095 TEX30 S09.027 +HGNC:28568 TEX33 testis expressed 33 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "MGC35206|EAN57" C22orf33 chromosome 22 open reading frame 33 2006-10-23 2012-02-16 2012-02-16 2014-11-18 339669 ENSG00000185264 OTTHUMG00000150531 uc003aqe.4 BC042635 NM_178552 "CCDS13937|CCDS54524" O43247 22332119 MGI:1920626 RGD:1592508 TEX33 +HGNC:25366 TEX35 testis expressed 35 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "DKFZP564J047|TSC24" Testis-Specific Conserved gene 24kDa C1orf49 chromosome 1 open reading frame 49 2005-01-31 2012-06-29 2012-06-29 2014-11-19 84066 ENSG00000240021 OTTHUMG00000035023 uc001glt.3 AL136694 NM_032126 "CCDS1323|CCDS53433|CCDS53434" Q5T0J7 "11230166|17077512" MGI:1920685 RGD:1595460 TEX35 +HGNC:31653 TEX36 testis expressed 36 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 bA383C5.1 C10orf122 chromosome 10 open reading frame 122 2004-05-27 2012-08-13 2012-08-13 2012-08-13 387718 ENSG00000175018 OTTHUMG00000019229 uc001lik.4 NM_001128202 "CCDS44493|CCDS81521" Q5VZQ5 MGI:1921058 RGD:1566410 +HGNC:49500 TEX36-AS1 TEX36 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q26.13 10q26.13 2013-12-20 2013-12-20 100169752 ENSG00000237675 OTTHUMG00000019227 NR_023362 +HGNC:26341 TEX37 testis expressed 37 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "FLJ25369|TSC21" Testis-Specific Conserved gene 21kDa C2orf51 chromosome 2 open reading frame 51 2006-10-26 2012-09-14 2012-09-14 2014-11-19 200523 ENSG00000172073 OTTHUMG00000130332 uc002stb.3 AK058098 NM_152670 CCDS2003 Q96LM6 17091336 MGI:1921471 RGD:1562720 +HGNC:29589 TEX38 testis expressed 38 protein-coding gene gene with protein product Approved 1p33 01p33 "LOC374973|THEG4" testis highly expressed protein 4 "C1orf223|ATPAF1-AS1" "chromosome 1 open reading frame 223|ATPAF1 antisense RNA 1 (non-protein coding)|ATPAF1 antisense RNA 1" 2008-07-18 2012-10-12 2012-10-12 2012-10-12 374973 ENSG00000186118 OTTHUMG00000007991 uc001cqj.4 NM_001145474 "CCDS57999|CCDS72780|CCDS72781" Q6PEX7 12477932 MGI:1922423 RGD:1585134 +HGNC:19231 TEX40 testis expressed 40 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 DKFZP566E164 C11orf20 chromosome 11 open reading frame 20 2008-12-09 2013-01-11 2013-01-11 2014-11-19 25858 ENSG00000219435 OTTHUMG00000167820 uc058cwu.1 NM_001039496 Q9NTU4 MGI:1914327 RGD:2318763 +HGNC:48667 TEX41 testis expressed 41 (non-protein coding) non-coding RNA RNA, long non-coding Approved 2q22.3 02q22.3 "DKFZp686O1327|LINC00953" long intergenic non-protein coding RNA 953 2013-06-04 2013-06-04 2014-02-12 401014 ENSG00000226674 OTTHUMG00000153701 BC043549 NR_033870 +HGNC:33767 TEX43 testis expressed 43 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 "MGC163367|MGC163369|FLJ27505|Tseg7" testis specific expressed gene 7 C5orf48 chromosome 5 open reading frame 48 2008-07-14 2014-02-21 2014-02-21 2014-02-21 389320 ENSG00000196900 OTTHUMG00000128944 NM_207408 CCDS4139 Q6ZNM6 MGI:1914593 RGD:1561039 +HGNC:30722 TEX101 testis expressed 101 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "MGC4766|SGRG|CT131|SPATA44" "cancer/testis antigen 131|spermatogenesis associated 44" testis expressed sequence 101 LY6/PLAUR domain containing 1226 2004-11-03 2007-03-13 2014-11-19 83639 ENSG00000131126 OTTHUMG00000182695 uc060zlc.1 AF241268 NM_031451 "CCDS12619|CCDS59393" Q9BY14 "16388701|16516155" MGI:1930791 RGD:621373 TEX101 612665 +HGNC:30712 TEX261 testis expressed 261 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "MGC32043|TEG-261" testis expressed sequence 261 2004-08-02 2007-03-13 2015-08-21 113419 ENSG00000144043 OTTHUMG00000170601 uc002shn.4 AL832385 NM_144582 CCDS1914 Q6UWH6 9464256 MGI:1096575 RGD:1305851 TEX261 +HGNC:30247 TEX264 testis expressed 264 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "ZSIG11|FLJ13935" "testis expressed gene 264|testis expressed sequence 264" 2004-07-12 2007-03-13 2016-10-05 51368 ENSG00000164081 OTTHUMG00000156901 uc031saa.2 AF072733 NM_015926 "CCDS2833|CCDS74945" Q9Y6I9 12975309 MGI:1096570 RGD:1359353 TEX264 +HGNC:11740 TF transferrin protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "PRO1557|PRO2086" Transferrins 908 2001-06-22 2016-10-05 7018 ENSG00000091513 OTTHUMG00000150356 uc003epv.2 NM_001063 CCDS3080 P02787 6585826 MGI:98821 RGD:3845 TF 190000 120027 +HGNC:11741 TFAM transcription factor A, mitochondrial protein-coding gene gene with protein product Approved 10q21.1 10q21.1 "TCF6|TCF6L2" 1991-09-13 2016-10-05 7019 ENSG00000108064 OTTHUMG00000018270 uc001jkf.5 BC018628 NM_003201 "CCDS7253|CCDS59217" Q00059 7789991 MGI:107810 RGD:620682 TFAM 600438 +HGNC:11636 TFAMP1 transcription factor A, mitochondrial pseudogene 1 pseudogene pseudogene Approved 7p22.3 07p22.3 MTTF1 TCF6L1 transcription factor 6-like 1 (mitochondrial transcription factor 1-like) 1991-09-13 2008-01-31 2008-01-31 2010-09-24 260341 ENSG00000230444 OTTHUMG00000151494 NR_001288 PGOHUM00000233097 +HGNC:11638 TFAMP2 transcription factor A, mitochondrial pseudogene 2 pseudogene pseudogene Approved 11q22.3 11q22.3 MTTF1 TCF6L3 transcription factor 6-like 3 (mitochondrial transcription factor 1-like) 1991-09-13 2008-01-31 2008-01-31 2014-11-19 260340 ENSG00000254798 OTTHUMG00000166570 NR_001287 PGOHUM00000242476 +HGNC:11742 TFAP2A transcription factor AP-2 alpha protein-coding gene gene with protein product Approved 6p24.3 06p24.3 AP-2 "TFAP2|AP2TF" "transcription factor AP-2 alpha (activating enhancer-binding protein 2 alpha)|transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha)" 1991-09-12 2016-04-06 2016-04-06 7020 ENSG00000137203 OTTHUMG00000014235 uc063ltd.1 X52611 NM_003220 "CCDS4510|CCDS34337|CCDS43422" P05549 "1916817|3063603" MGI:104671 RGD:1310267 TFAP2A 107580 159950 +HGNC:40579 TFAP2A-AS1 TFAP2A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p24.3 06p24.3 2013-07-24 2014-11-18 100130275 ENSG00000229950 OTTHUMG00000014233 NR_033910 +HGNC:11743 TFAP2B transcription factor AP-2 beta protein-coding gene gene with protein product Approved 6p12.3 06p12.3 AP2-B "transcription factor AP-2 beta (activating enhancer-binding protein 2 beta)|transcription factor AP-2 beta (activating enhancer binding protein 2 beta)" 1995-12-18 2016-04-06 2016-10-05 7021 ENSG00000008196 OTTHUMG00000014836 uc003pag.4 X95694 NM_003221 CCDS4934 Q92481 "7555706|8661133" MGI:104672 RGD:1306321 TFAP2B 601601 120029 +HGNC:11744 TFAP2C transcription factor AP-2 gamma protein-coding gene gene with protein product Approved 20q13.31 20q13.31 "AP2-GAMMA|ERF1|TFAP2G|hAP-2g" estrogen receptor factor 1 transcription factor AP-2 gamma (activating enhancer-binding protein 2 gamma) 1997-01-08 2016-04-06 2016-10-05 7022 ENSG00000087510 OTTHUMG00000032805 uc002xya.4 NM_003222 CCDS13454 Q92754 8661133 MGI:106032 RGD:1303185 TFAP2C 601602 +HGNC:15581 TFAP2D transcription factor AP-2 delta protein-coding gene gene with protein product Approved 6p12.3 06p12.3 TFAP2BL1 "transcription factor AP-2 beta (activating enhancer-binding protein 2 beta)-like 1|transcription factor AP-2 delta (activating enhancer binding protein 2 delta)" 2001-04-27 2004-10-27 2016-04-06 2016-04-06 83741 ENSG00000008197 uc003paf.4 AY028376 NM_172238 CCDS4933 Q7Z6R9 11733187 MGI:2153466 RGD:1304864 TFAP2D 610161 +HGNC:30774 TFAP2E transcription factor AP-2 epsilon protein-coding gene gene with protein product Approved 1p34.3 01p34.3 AP2E transcription factor AP-2 epsilon (activating enhancer binding protein 2 epsilon) 2004-11-05 2016-04-06 2016-04-06 339488 ENSG00000116819 OTTHUMG00000004388 uc010ohy.3 BC041175 NM_178548 CCDS393 Q6VUC0 14636996 MGI:2679630 RGD:1563297 TFAP2E 614428 +HGNC:11745 TFAP4 transcription factor AP-4 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "AP-4|bHLHc41" transcription factor AP-4 (activating enhancer-binding protein 4) Basic helix-loop-helix proteins 420 1995-03-01 2016-07-19 2016-10-05 7023 ENSG00000090447 OTTHUMG00000129435 uc010uxg.3 X57435 NM_003223 CCDS10510 Q01664 2123466 MGI:103239 RGD:1308357 TFAP4 600743 +HGNC:17037 TFB1M transcription factor B1, mitochondrial protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "mtTFB|CGI-75" dimethyladenosine transferase 1, mitochondrial 2002-04-26 2016-10-05 51106 ENSG00000029639 OTTHUMG00000015881 uc003qqj.5 AF151833 XR_001743453 CCDS5248 Q8WVM0 "10810093|11809803" MGI:2146851 RGD:727795 TFB1M 607033 120032 +HGNC:18559 TFB2M transcription factor B2, mitochondrial protein-coding gene gene with protein product Approved 1q44 01q44 "FLJ23182|FLJ22661|Hkp1" 2002-04-26 2014-11-19 64216 ENSG00000162851 OTTHUMG00000040091 uc001ibn.4 AK026835 NM_022366 CCDS1627 Q9H5Q4 MGI:107937 RGD:1307091 TFB2M 607055 +HGNC:11748 TFCP2 transcription factor CP2 protein-coding gene gene with protein product Approved 12q13 12q13 "CP2|LSF|LBP-1C|TFCP2C" 1994-12-15 2015-09-08 7024 ENSG00000135457 OTTHUMG00000169621 uc001rxw.4 U03494 NM_005653 "CCDS8808|CCDS55827" Q12800 8157699 MGI:98509 RGD:1306738 TFCP2 189889 +HGNC:17925 TFCP2L1 transcription factor CP2 like 1 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "LBP-9|CRTR1" transcription factor CP2-like 1 2004-01-05 2016-08-25 2016-10-05 29842 ENSG00000115112 OTTHUMG00000131443 uc002tmx.4 AF198488 NM_014553 CCDS2134 Q9NZI6 "10644752|11073954" MGI:2444691 RGD:1305456 TFCP2L1 609785 +HGNC:11749 TFDP1 transcription factor Dp-1 protein-coding gene gene with protein product Approved 13q34 13q34 "Dp-1|DRTF1|DP1|DILC" down-regulated in liver cancer stem cells Transcription factor Dp family 987 1995-02-02 2016-01-29 7027 ENSG00000198176 OTTHUMG00000017388 uc001vtw.4 BC011685 NM_007111 CCDS9538 Q14186 "8413592|9027491" MGI:101934 RGD:1560344 TFDP1 189902 +HGNC:11750 TFDP1P transcription factor Dp-1 pseudogene pseudogene pseudogene Approved 1q32.3 01q32.3 1996-05-15 2009-11-05 391158 U58192 NG_009284 9027491 +HGNC:11751 TFDP2 transcription factor Dp-2 protein-coding gene gene with protein product Approved 3q23 03q23 Dp-2 E2F dimerization partner 2 transcription factor Dp-2 (E2F dimerization partner 2) Transcription factor Dp family 987 1995-12-15 2016-04-04 2016-04-04 7029 ENSG00000114126 OTTHUMG00000164975 uc003eum.5 U18422 NM_006286 "CCDS43159|CCDS54647|CCDS54648|CCDS54649|CCDS54650" Q14188 "7784053|9027491" MGI:107167 RGD:1305814 TFDP2 602160 +HGNC:24603 TFDP3 transcription factor Dp family member 3 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 "HCA661|E2F-like|CT30" "E2F-like protein|cancer/testis antigen 30" transcription factor Dp family, member 3 Transcription factor Dp family 987 2004-07-15 2015-11-18 2015-11-18 51270 ENSG00000183434 OTTHUMG00000022433 uc004exb.1 AF219119 NM_016521 CCDS14636 Q5H9I0 12097419 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TFDP3 TFDP3 300772 +HGNC:11752 TFE3 transcription factor binding to IGHM enhancer 3 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "TFEA|bHLHe33" Basic helix-loop-helix proteins 420 1990-10-16 2016-10-05 7030 ENSG00000068323 OTTHUMG00000022690 uc004dmb.5 X96717 NM_006521 CCDS14315 P19532 "1672758|1685140" MGI:98511 RGD:1559642 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TFE3 TFE3 314310 120036 +HGNC:11753 TFEB transcription factor EB protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "TCFEB|bHLHe35" Basic helix-loop-helix proteins 420 1999-09-20 2016-10-05 7942 ENSG00000112561 OTTHUMG00000014684 uc003oqt.3 M33782 XM_006715212 "CCDS4858|CCDS64424|CCDS64425" P19484 2115126 MGI:103270 RGD:1309583 TFEB 600744 326706 +HGNC:11754 TFEC transcription factor EC protein-coding gene gene with protein product Approved 7q31.2 07q31.2 "TCFEC|TFECL|bHLHe34" Basic helix-loop-helix proteins 420 1999-09-20 2014-11-19 22797 ENSG00000105967 OTTHUMG00000023518 uc003vhj.3 D43945 NM_012252 "CCDS5762|CCDS34738|CCDS59076" O14948 9256061 MGI:1333760 RGD:3846 TFEC 604732 +HGNC:11755 TFF1 trefoil factor 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "D21S21|HPS2|pS2|pNR-2|HP1.A" BCEI breast cancer, estrogen-inducible sequence expressed in 2001-06-22 2007-01-29 2014-11-19 7031 ENSG00000160182 OTTHUMG00000086799 uc002zax.2 BC032811 NM_003225 CCDS13685 P04155 9043862 MGI:88135 RGD:620707 TFF1 113710 +HGNC:11756 TFF2 trefoil factor 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 SML1 spasmolytic protein 1 1991-12-13 2008-07-28 2015-08-26 7032 ENSG00000160181 OTTHUMG00000086797 uc002zaw.4 NM_005423 CCDS13684 Q03403 "1505966|9043862" MGI:1306805 RGD:620709 TFF2 182590 +HGNC:11757 TFF3 trefoil factor 3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "HITF|ITF" trefoil factor 3 (intestinal) 1995-11-22 2015-11-10 2016-04-25 7033 ENSG00000160180 OTTHUMG00000086798 uc002zav.4 AF432265 NM_003226 CCDS33565 Q07654 "7718582|9043862" MGI:104638 RGD:3847 TFF3 600633 +HGNC:11758 TFG TRK-fused gene protein-coding gene gene with protein product Approved 3q12.2 03q12.2 "TF6|FLJ36137|SPG57" 1999-06-14 2001-12-04 2016-08-04 10342 ENSG00000114354 OTTHUMG00000159085 uc003duf.4 BC009241 NM_006070 "CCDS2939|CCDS56266" Q92734 "9169129|23479643" MGI:1338041 RGD:1309751 TFG 602498 120039 +HGNC:17165 TFIP11 tuftelin interacting protein 11 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 "TIP39|DKFZP434B194|Spp382" G-patch domain containing 579 2002-06-07 2014-11-19 24144 ENSG00000100109 OTTHUMG00000150883 uc003act.4 AL050258 NM_001008697 CCDS13838 Q9UBB9 "10806191|11230166" MGI:1930075 RGD:1311449 TFIP11 612747 +HGNC:11759 TFP1 transferrin pseudogene 1 pseudogene pseudogene Approved 3q22.1 03q22.1 TFP transferrin pseudogene 2001-06-22 2010-07-20 2010-07-20 2016-10-05 100129696 ENSG00000242337 OTTHUMG00000159751 M22375 NG_008673 +HGNC:11760 TFPI tissue factor pathway inhibitor protein-coding gene gene with protein product Approved 2q32.1 02q32.1 "EPI|TFI|TFPI1" extrinsic pathway inhibitor LACI tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) 1991-06-03 2015-11-19 2016-10-05 7035 ENSG00000003436 OTTHUMG00000132634 uc002upy.4 NM_006287 "CCDS2294|CCDS33349" P10646 1993173 MGI:1095418 RGD:61914 TFPI 152310 LI02-002 +HGNC:11761 TFPI2 tissue factor pathway inhibitor 2 protein-coding gene gene with protein product Approved 7q21.3 07q21.3 "PP5|TFPI-2|REF1" 1999-07-14 2016-10-05 7980 ENSG00000105825 OTTHUMG00000022963 uc003umy.2 L27624 NM_006528 CCDS5632 P48307 "7896752|8945635" MGI:108543 RGD:628629 TFPI2 600033 LI02-003 +HGNC:13630 TFPT TCF3 fusion partner protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "FB1|amida|INO80F" "amida, partner of the E2A|INO80 complex subunit F" TCF3 (E2A) fusion partner (in childhood Leukemia) INO80 complex 595 2000-09-27 2016-06-30 2016-10-05 29844 ENSG00000105619 OTTHUMG00000065906 uc010yej.1 AF052052 NM_013342 "CCDS12878|CCDS82396" P0C1Z6 "10644725|16230350" MGI:1916964 RGD:620839 TFPT 609519 +HGNC:11762 TFR2 transferrin receptor 2 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "HFE3|TFRC2" 1998-06-03 2016-10-05 7036 ENSG00000106327 OTTHUMG00000159598 uc064ggh.1 AF053356 NM_003227 CCDS34707 Q9UP52 "9799793|12130528" MGI:1354956 RGD:1310152 TFR2 604720 120043 M28.973 +HGNC:11763 TFRC transferrin receptor protein-coding gene gene with protein product Approved 3q29 03q29 "CD71|TFR1|p90" transferrin receptor (p90, CD71) CD molecules 471 2001-06-22 2013-09-19 2014-11-19 7037 ENSG00000072274 OTTHUMG00000155714 uc003fwa.5 X01060 NM_001128148 "CCDS3312|CCDS82891" P02786 MGI:98822 RGD:70488 TFRC 190010 M28.972 CD71 +HGNC:11764 TG thyroglobulin protein-coding gene gene with protein product Approved 8q24.22 08q24.22 "TGN|AITD3" 2001-06-22 2016-10-05 7038 ENSG00000042832 OTTHUMG00000164649 uc003ytw.4 AU141420 NM_003235 CCDS34944 P01266 MGI:98733 RGD:3848 TG 188450 168347 +HGNC:13466 TGCT1 testicular germ cell tumor susceptibility 1 phenotype phenotype only Approved Xq27 Xq27 2004-04-30 2011-02-10 50830 10655070 300228 +HGNC:20324 TGDS TDP-glucose 4,6-dehydratase protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "TDPGD|SDR2E1" short chain dehydrogenase/reductase family 2E, member 1 Short chain dehydrogenase/reductase superfamily 743 2003-04-10 2016-07-06 2016-07-06 23483 ENSG00000088451 OTTHUMG00000046308 uc001vlw.4 AF048686 NM_014305 CCDS9471 O95455 19027726 MGI:1923605 RGD:1306544 TGDS 616146 419174 4.2.1.46 +HGNC:11765 TGFA transforming growth factor alpha protein-coding gene gene with protein product Approved 2p13.3 02p13.3 transforming growth factor, alpha 2001-06-22 2015-11-05 2016-10-05 7039 ENSG00000163235 OTTHUMG00000129669 uc002sgs.4 NM_003236 "CCDS1905|CCDS46316|CCDS77419|CCDS77420" P01135 "3459638|10552925" MGI:98724 RGD:3849 TGFA 190170 159040 +HGNC:41389 TGFA-IT1 TGFA intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2p13.3 02p13.3 TGFA intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874273 ENSG00000224606 OTTHUMG00000153490 uc061kjm.1 NR_046798 +HGNC:11766 TGFB1 transforming growth factor beta 1 protein-coding gene gene with protein product Approved 19q13.1 19q13.1 "CED|TGFbeta" "Camurati-Engelmann disease|prepro-transforming growth factor beta-1" "TGFB|DPD1" transforming growth factor, beta 1 Endogenous ligands 542 2001-06-22 2015-11-05 2015-11-05 7040 ENSG00000105329 OTTHUMG00000182760 uc002oqh.4 X02812 NM_000660 CCDS33031 P01137 "10631145|10843814" MGI:98725 RGD:69051 TGFB1 190180 120047 +HGNC:11767 TGFB1I1 transforming growth factor beta 1 induced transcript 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "Hic-5|TSC-5|ARA55|HIC-5" hydrogen peroxide-inducible clone-5 LIM domain containing 1218 1998-03-23 2016-10-05 7041 ENSG00000140682 OTTHUMG00000132467 uc021tgx.1 AB007836 NM_015927 "CCDS10713|CCDS42156" O43294 "9422762|10075738" MGI:102784 RGD:620173 TGFB1I1 602353 +HGNC:11768 TGFB2 transforming growth factor beta 2 protein-coding gene gene with protein product Approved 1q41 01q41 prepro-transforming growth factor beta-2 transforming growth factor, beta 2 Endogenous ligands 542 1989-05-10 2015-11-05 2015-11-05 7042 ENSG00000092969 OTTHUMG00000039521 uc001hlm.4 M19154 NM_003238 "CCDS1521|CCDS44318" P61812 MGI:98726 RGD:70491 TGFB2 190220 120052 +HGNC:50628 TGFB2-AS1 TGFB2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 1q41 01q41 2014-05-30 2014-06-02 728463 ENSG00000232480 OTTHUMG00000039520 BX099841 NR_046268 +HGNC:50629 TGFB2-OT1 TGFB2 overlapping transcript 1 non-coding RNA RNA, long non-coding Approved 1q41 01q41 FLJ11812 2014-05-30 2015-08-26 103611157 ENSG00000281453 OTTHUMG00000189749 AK021874 NR_125715 "24879147|25437332" +HGNC:11769 TGFB3 transforming growth factor beta 3 protein-coding gene gene with protein product Approved 14q24 14q24 prepro-transforming growth factor beta-3 "ARVD1|ARVD" "arrhythmogenic right ventricular dysplasia 1|transforming growth factor, beta 3" Endogenous ligands 542 1989-05-10 2015-11-05 2016-10-12 7043 ENSG00000119699 OTTHUMG00000171489 uc001xsc.3 NM_003239 CCDS9846 P10600 "16549496|15639475" MGI:98727 RGD:3851 "ARVD/C Genetic Variants Database|http://grenada.lumc.nl/LOVD2/ARVC/home.php?select_db=TGFB3|LRG_399|http://www.lrg-sequence.org/LRG/LRG_399" TGFB3 190230 120054 +HGNC:11771 TGFBI transforming growth factor beta induced protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "BIGH3|CDB1|CDGG1" "CSD3|LCD1|CSD1|CSD2" "transforming growth factor, beta-induced, 68kD|transforming growth factor, beta-induced, 68kDa" 1995-07-18 2015-11-16 2016-10-05 7045 ENSG00000120708 OTTHUMG00000163213 uc003lbf.5 M77349 NM_000358 CCDS47266 Q15582 9463327 MGI:99959 RGD:620017 TGFBI 601692 120056 +HGNC:11772 TGFBR1 transforming growth factor beta receptor 1 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "ALK-5|ACVRLK4|ALK5" activin A receptor type II-like kinase, 53kDa "MSSE|ESS1" "multiple self-healing squamous epithelioma|transforming growth factor beta receptor I" Type 1 receptor serine/threonine kinases 345 1993-09-30 2016-04-27 2016-10-05 7046 ENSG00000106799 OTTHUMG00000020353 uc004azc.4 XM_011518948 "CCDS6738|CCDS47998|CCDS78413" P36897 "1319842|8530052|21358634" MGI:98728 RGD:3852 LOVD - Center for Medical Genetics, Ghent, Belgium|http://medgen.ugent.be/LOVD2/home.php?select_db=TGFBR1 TGFBR1 190181 120065 objectId:1788 +HGNC:11773 TGFBR2 transforming growth factor beta receptor 2 protein-coding gene gene with protein product Approved 3p24.1 03p24.1 MFS2 "transforming growth factor, beta receptor II (70/80kDa)|transforming growth factor beta receptor II" Type 2 receptor serine/threonine kinases 346 1993-09-30 2016-04-27 2016-10-12 7048 ENSG00000163513 OTTHUMG00000130569 uc003ceo.4 XM_011534043 "CCDS2648|CCDS33727" P37173 "1319842|15235604" MGI:98729 RGD:69651 "LOVD - Center for Medical Genetics, Ghent, Belgium|http://medgen.ugent.be/LOVD2/home.php?select_db=TGFBR2|The TGFBR2 mutations database|http://www.umd.be/TGFBR2/|LRG_779|http://www.lrg-sequence.org/LRG/LRG_779" TGFBR2 190182 120069 objectId:1795 +HGNC:11774 TGFBR3 transforming growth factor beta receptor 3 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "betaglycan|BGCAN" betaglycan proteoglycan "transforming growth factor, beta receptor III|transforming growth factor beta receptor III" Proteoglycans 570 1993-09-30 2016-04-27 2016-10-05 7049 ENSG00000069702 OTTHUMG00000010097 uc001doh.4 L07594 NM_003243 "CCDS30770|CCDS55614" Q03167 "1333192|1319842" MGI:104637 RGD:61821 TGFBR3 600742 375701 objectId:1796 +HGNC:44152 TGFBR3L transforming growth factor beta receptor 3 like protein-coding gene gene with protein product Approved 19p13.2 19p13.2 transforming growth factor, beta receptor III-like 2012-07-02 2016-04-27 2016-04-27 100507588 ENSG00000260001 OTTHUMG00000175717 uc021uoa.2 NM_001195259 CCDS58648 H3BV60 MGI:3833469 RGD:1586419 +HGNC:16836 TGFBRAP1 transforming growth factor beta receptor associated protein 1 protein-coding gene gene with protein product Approved 2q12.1-q12.2 02q12.1-q12.2 "TRAP-1|TRAP1|VPS3" VPS3 CORVET complex subunit transforming growth factor, beta receptor associated protein 1 2003-02-11 2015-11-05 2016-10-11 9392 ENSG00000135966 OTTHUMG00000130809 uc002tcq.5 AF022795 NM_004257 CCDS2067 Q8WUH2 "9545258|11278302|26463206" MGI:2447427 RGD:1310772 TGFBRAP1 606237 +HGNC:11775 TGFBRE entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-03-23 +HGNC:11776 TGIF1 TGFB induced factor homeobox 1 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 "HPE4|TGIF" "TGFB-induced factor (TALE family homeobox)|TGFB-induced factor homeobox 1" TALE class homeoboxes and pseudogenes 526 1998-01-09 2007-01-30 2016-02-02 2016-02-02 7050 ENSG00000177426 OTTHUMG00000131511 uc060mxy.1 X89750 NM_170695 "CCDS11832|CCDS11833|CCDS11834|CCDS11835" Q15583 "8537382|10835638" MGI:1194497 RGD:1310517 TGIF1 602630 8625 120072 +HGNC:30730 TGIF1P1 TGFB induced factor homeobox 1 pseudogene 1 pseudogene pseudogene Approved 19q13.32 19q13.32 TGFB-induced factor homeobox 1 pseudogene 1 TALE class homeoboxes and pseudogenes 526 2007-02-07 2016-02-02 2016-07-25 126052 ENSG00000259339 OTTHUMG00000158208 NG_002440 8595 PGOHUM00000295050 +HGNC:15764 TGIF2 TGFB induced factor homeobox 2 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 "TGFB-induced factor 2 (TALE family homeobox)|TGFB-induced factor homeobox 2" TALE class homeoboxes and pseudogenes 526 2001-05-31 2016-02-02 2016-02-02 60436 ENSG00000118707 OTTHUMG00000172332 uc021wcv.2 AB042646 NM_021809 CCDS13278 Q9GZN2 11006116 MGI:1915299 RGD:1560115 TGIF2 607294 8517 +HGNC:44664 TGIF2-C20orf24 TGIF2-C20orf24 readthrough other readthrough Approved 20q11.23 20q11.23 2012-12-12 2012-12-12 100527943 ENSG00000259399 OTTHUMG00000032382 uc002xfo.4 NM_001199535 CCDS58772 +HGNC:18570 TGIF2LX TGFB induced factor homeobox 2 like, X-linked protein-coding gene gene with protein product Approved Xq21.31 Xq21.31 "TGFB-induced factor 2-like, X-linked|TGFB-induced factor homeobox 2-like, X-linked" TALE class homeoboxes and pseudogenes 526 2002-05-22 2016-02-02 2016-02-02 90316 ENSG00000153779 OTTHUMG00000021954 uc004efe.4 AF497480 NM_138960 CCDS14459 Q8IUE1 "MGI:2387796|MGI:3800824" RGD:1561826 TGIF2LX 300411 8518 +HGNC:18569 TGIF2LY TGFB induced factor homeobox 2 like, Y-linked protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 "TGFB-induced factor 2-like, Y-linked|TGFB-induced factor homeobox 2-like, Y-linked" TALE class homeoboxes and pseudogenes 526 2002-05-22 2016-02-02 2016-02-02 90655 ENSG00000176679 OTTHUMG00000036153 uc004fqk.4 AF332223 NM_139214 CCDS14775 Q8IUE0 TGIF2LY 400025 8519 +HGNC:33317 TGIF2P1 TGFB induced factor homeobox 2 pseudogene 1 pseudogene pseudogene Approved 1q44 01q44 TGFB-induced factor homeobox 2 pseudogene 1 TALE class homeoboxes and pseudogenes 526 2007-02-07 2016-02-02 2016-02-02 126826 ENSG00000225401 OTTHUMG00000040101 NG_009692 8568 PGOHUM00000296142 +HGNC:33320 TGIF2P2 entry withdrawn withdrawn withdrawn Entry Withdrawn TALE class homeoboxes and pseudogenes 526 2015-10-08 8569 +HGNC:33318 TGIF2P3 entry withdrawn withdrawn withdrawn Entry Withdrawn TALE class homeoboxes and pseudogenes 526 2015-10-08 8570 +HGNC:33319 TGIF2P4 entry withdrawn withdrawn withdrawn Entry Withdrawn TALE class homeoboxes and pseudogenes 526 2015-10-08 8571 +HGNC:11777 TGM1 transglutaminase 1 protein-coding gene gene with protein product Approved 14q12 14q12 "TGASE|TGK|LI|LI1" K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase ICR2 transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase) Transglutaminases 773 1990-05-25 2013-05-02 2016-10-05 7051 ENSG00000092295 OTTHUMG00000029329 uc001wod.3 D90287 NM_000359 CCDS9622 P22735 11390390 MGI:98730 RGD:61838 TGM1 190195 120076 2.3.2.13 +HGNC:11778 TGM2 transglutaminase 2 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 TGC C polypeptide, protein-glutamine-gamma-glutamyltransferase transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) Transglutaminases 773 1991-08-02 2013-05-02 2016-10-05 7052 ENSG00000198959 OTTHUMG00000032437 uc002xhr.5 M98478 NM_198951 CCDS13302 P21980 "7912692|11390390" MGI:98731 RGD:621081 TGM2 190196 2.3.2.13 +HGNC:11779 TGM3 transglutaminase 3 protein-coding gene gene with protein product Approved 20p13 20p13 TGE E polypeptide, protein-glutamine-gamma-glutamyltransferase transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase) Transglutaminases 773 1991-08-02 2013-05-02 2016-10-05 7053 ENSG00000125780 OTTHUMG00000031690 uc002wfx.5 L10386 NM_003245 CCDS33435 Q08188 "7851911|9452468" MGI:98732 RGD:1561831 TGM3 600238 2.3.2.13 +HGNC:11780 TGM4 transglutaminase 4 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 TGP transglutaminase 4 (prostate) Transglutaminases 773 1995-02-07 2013-05-02 2016-10-05 7047 ENSG00000163810 OTTHUMG00000133096 uc003coc.5 BC007003 NM_003241 CCDS2723 P49221 "7665178|7916568" MGI:3027002 RGD:620785 TGM4 600585 2.3.2.13 +HGNC:11781 TGM5 transglutaminase 5 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 TGX Transglutaminases 773 1999-03-19 2016-01-15 9333 ENSG00000104055 OTTHUMG00000176488 uc001zrd.2 AF035960 NM_004245 "CCDS32211|CCDS32212" O43548 "9452468|11390390" MGI:1921426 RGD:1593350 TGM5 603805 120083 2.3.2.13 +HGNC:16255 TGM6 transglutaminase 6 protein-coding gene gene with protein product Approved 20p13 20p13 "dJ734P14.3|TGY|SCA35" spinocerebellar ataxia 35 TGM3L transglutaminase 3-like Transglutaminases 773 2001-07-17 2004-07-07 2004-07-05 2014-11-18 343641 ENSG00000166948 OTTHUMG00000031692 uc002wfy.1 AF540970 NM_198994 "CCDS13025|CCDS58761" O95932 "11390390|21106500" MGI:3044321 RGD:1565348 TGM6 613900 279644 +HGNC:30790 TGM7 transglutaminase 7 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 TGMZ transglutaminase Z Transglutaminases 773 2004-07-01 2015-09-08 116179 ENSG00000159495 OTTHUMG00000176547 uc001zrf.2 AF363393 NM_052955 CCDS32213 Q96PF1 11390390 MGI:2151164 RGD:7615199 TGM7 606776 +HGNC:15450 TGOLN2 trans-golgi network protein 2 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "TGN51|TGN46|TGN48|TGN38|TTGN2" trans-Golgi network protein (46, 48, 51kD isoforms) 2001-08-07 2014-11-19 10618 ENSG00000152291 OTTHUMG00000153017 uc002soz.4 AF027515 NM_006464 "CCDS46351|CCDS56126|CCDS56127" O43493 "9422759|21994457" MGI:105079 RGD:620445 TGOLN2 603062 +HGNC:17843 TGS1 trimethylguanosine synthase 1 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 PIMT NCOA6IP "nuclear receptor coactivator 6 interacting protein|trimethylguanosine synthase homolog (S. cerevisiae)" 2001-12-19 2006-11-27 2010-06-25 2016-10-05 96764 ENSG00000137574 OTTHUMG00000164294 uc003xsj.5 AY028423 NM_024831 CCDS34894 Q96RS0 "11517327|11983179|19307714" MGI:2151797 RGD:1309953 TGS1 606461 2.1.1.- +HGNC:11782 TH tyrosine hydroxylase protein-coding gene gene with protein product Approved 11p15.5 11p15.5 DYT5b tyrosine 3-monooxygenase 1986-01-01 2015-08-26 7054 ENSG00000180176 OTTHUMG00000009559 uc001lvr.4 X05290 NM_000360 "CCDS7730|CCDS7731|CCDS31338" P07101 MGI:98735 RGD:3853 BIOMBD|http://www.biopku.org/home/biomdb.asp TH 191290 120086 objectId:1243 1.14.16.2 +HGNC:40495 TH2LCRR T helper type 2 locus control region associated RNA non-coding RNA RNA, long non-coding Approved 5q31.1 05q31.1 TH2-LCR Long non-coding RNAs 788 2015-05-01 2015-08-07 101927761 ENSG00000223442 OTTHUMG00000059612 NR_132124 25903499 +HGNC:18004 THA1P threonine aldolase 1, pseudogene pseudogene pseudogene Approved 17q25.3 17q25.3 GLY1 2005-06-16 2009-12-08 2014-11-19 390816 ENSG00000267676 OTTHUMG00000132125 XM_372682 15757516 MGI:1919026 +HGNC:19217 THADA THADA, armadillo repeat containing protein-coding gene gene with protein product Approved 2p21 02p21 "FLJ21877|KIAA1767|GITA|ARMC13" thyroid adenoma associated Armadillo repeat containing 409 2004-01-05 2016-04-29 2016-04-29 63892 ENSG00000115970 OTTHUMG00000152398 uc002rsx.4 AY149629 NM_022065 "CCDS46268|CCDS62901|CCDS62902" Q6YHU6 "12063398|11214970" MGI:3039623 RGD:1560519 THADA 611800 +HGNC:20856 THAP1 THAP domain containing 1 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 "FLJ10477|4833431A01Rik" DYT6 "dystonia 6, torsion (autosomal dominant)|THAP domain containing, apoptosis associated protein 1" THAP domain containing 65 2003-07-21 2016-05-23 2016-10-05 55145 ENSG00000131931 OTTHUMG00000165276 uc003xpk.4 BC021721 NM_018105 "CCDS6136|CCDS6137" Q9NVV9 "12575992|12717420|19182804" MGI:1921004 RGD:1307589 THAP1 609520 178822 +HGNC:20854 THAP2 THAP domain containing 2 protein-coding gene gene with protein product Approved 12q21.1 12q21.1 DKFZP564I0422 THAP domain containing, apoptosis associated protein 2 THAP domain containing 65 2003-07-21 2016-05-23 2016-05-23 83591 ENSG00000173451 OTTHUMG00000169556 uc001swq.4 BC008358 NM_031435 CCDS9001 Q9H0W7 12575992 MGI:1914066 RGD:1593643 THAP2 612531 +HGNC:20855 THAP3 THAP domain containing 3 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 THAP domain containing, apoptosis associated protein 3 THAP domain containing 65 2003-07-21 2016-05-16 2016-10-05 90326 ENSG00000041988 OTTHUMG00000001440 uc001aoe.3 BC022081 NM_138350 "CCDS86|CCDS55572|CCDS55573" Q8WTV1 12575992 MGI:1917126 RGD:1308109 THAP3 612532 +HGNC:23187 THAP4 THAP domain containing 4 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 CGI-36 THAP domain containing 65 2003-10-08 2015-08-26 51078 ENSG00000176946 OTTHUMG00000133410 uc002wbt.4 AF258556 NM_015963 "CCDS2551|CCDS54440" Q8WY91 "12575992|10810093" MGI:1914276 RGD:1359473 THAP4 612533 +HGNC:23188 THAP5 THAP domain containing 5 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 DKFZp313O1132 THAP domain containing 65 2003-10-08 2016-10-05 168451 ENSG00000177683 OTTHUMG00000154951 uc064hbq.1 AL833137 NM_182529 "CCDS34734|CCDS47687" Q7Z6K1 12575992 THAP5 612534 +HGNC:22340 THAP5P1 THAP domain containing 5 pseudogene 1 pseudogene pseudogene Approved 7q36.3 07q36.3 2012-11-13 2012-11-13 285872 ENSG00000224324 OTTHUMG00000153022 NG_005177 PGOHUM00000233094 +HGNC:44502 THAP5P2 THAP domain containing 5 pseudogene 2 pseudogene pseudogene Approved 3p25.1 03p25.1 2012-11-13 2012-11-13 100129618 NG_028903 PGOHUM00000257057 +HGNC:23189 THAP6 THAP domain containing 6 protein-coding gene gene with protein product Approved 4q21.1 04q21.1 MGC30052 THAP domain containing 65 2003-10-08 2016-10-05 152815 ENSG00000174796 OTTHUMG00000130108 uc003him.4 BC022989 NM_144721 "CCDS3568|CCDS82932" Q8TBB0 12575992 RGD:1310094 THAP6 612535 +HGNC:23190 THAP7 THAP domain containing 7 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 MGC10963 THAP domain containing 65 2003-10-08 2016-10-05 80764 ENSG00000184436 OTTHUMG00000150879 uc002ztr.2 BC004346 NM_030573 CCDS13787 Q9BT49 12575992 MGI:1916259 RGD:1308061 THAP7 609518 +HGNC:41013 THAP7-AS1 THAP7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q11.21 22q11.21 THAP7 antisense RNA 1 (non-protein coding) 2011-10-20 2012-08-15 2014-11-19 439931 ENSG00000230513 OTTHUMG00000150877 uc002ztv.4 NR_027051 +HGNC:23191 THAP8 THAP domain containing 8 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ32891 THAP domain containing 65 2003-10-08 2016-10-05 199745 ENSG00000161277 OTTHUMG00000048138 uc002oda.1 AK057453 NM_152658 CCDS33000 Q8NA92 12575992 RGD:9345801 THAP8 612536 +HGNC:23192 THAP9 THAP domain containing 9 protein-coding gene gene with protein product Approved 4q21.22 04q21.22 FLJ34093 THAP domain containing 65 2003-10-08 2016-10-05 79725 ENSG00000168152 OTTHUMG00000130291 uc003hnt.3 AK091412 NM_024672 CCDS3598 Q9H5L6 12575992 THAP9 612537 +HGNC:44172 THAP9-AS1 THAP9 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q21.22 04q21.22 THAP9 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100499177 ENSG00000251022 OTTHUMG00000160729 uc003hnq.4 BC063702 NR_034075 +HGNC:23193 THAP10 THAP domain containing 10 protein-coding gene gene with protein product Approved 15q23 15q23 THAP domain containing 65 2003-10-08 2016-10-05 56906 ENSG00000129028 OTTHUMG00000133388 uc002asv.4 AL360202 NM_020147 CCDS10237 Q9P2Z0 12575992 THAP10 612538 +HGNC:23194 THAP11 THAP domain containing 11 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "HRIHFB2206|CTG-B45d|CTG-B43a" THAP domain containing 65 2003-10-08 2015-08-26 57215 ENSG00000168286 OTTHUMG00000137546 uc002euo.4 AB015338 NM_020457 CCDS10847 Q96EK4 "12575992|8325628" MGI:1930964 RGD:1310268 THAP11 609119 +HGNC:9440 THAP12 THAP domain containing 12 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "P52rIPK|DAP4|THAP0" "death-associated protein 4|P58IPK-regulatory protein|52 kDa repressor of the inhibitor of the protein kinase" PRKRIR protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) THAP domain containing 65 1998-01-30 2016-02-12 2016-02-12 2016-02-12 5612 ENSG00000137492 OTTHUMG00000165280 uc001oxh.2 AF007393 NM_004705 CCDS8243 O43422 "9447982|15863623" MGI:1920231 RGD:1309679 607374 +HGNC:39563 THAP12P1 THAP domain containing 12 pseudogene 1 pseudogene pseudogene Approved Xq13.2 Xq13.2 PRKRIRP1 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 1 2011-03-09 2016-02-12 2016-02-12 2016-02-12 728748 ENSG00000230665 OTTHUMG00000021854 NG_022612 PGOHUM00000241398 +HGNC:39566 THAP12P2 THAP domain containing 12 pseudogene 2 pseudogene pseudogene Approved 3p12.1 03p12.1 PRKRIRP2 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 2 2011-03-14 2016-02-12 2016-02-12 2016-02-12 100422711 ENSG00000243915 OTTHUMG00000158989 NG_025711 PGOHUM00000238090 +HGNC:39567 THAP12P3 THAP domain containing 12 pseudogene 3 pseudogene pseudogene Approved 10q21.1 10q21.1 PRKRIRP3 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 3 2011-03-14 2016-02-12 2016-02-12 2016-02-12 399774 ENSG00000227972 OTTHUMG00000018250 NG_022179 PGOHUM00000238800 +HGNC:39568 THAP12P4 THAP domain containing 12 pseudogene 4 pseudogene pseudogene Approved 11p14.3 11p14.3 PRKRIRP4 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 4 2011-03-14 2016-02-12 2016-02-12 2016-02-12 100129382 ENSG00000254465 OTTHUMG00000166085 NG_021813 PGOHUM00000242616 +HGNC:39569 THAP12P5 THAP domain containing 12 pseudogene 5 pseudogene pseudogene Approved 6p24.2 06p24.2 PRKRIRP5 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 5 2011-03-14 2016-02-12 2016-02-12 2016-02-12 100129074 ENSG00000218020 OTTHUMG00000014258 NG_022344 PGOHUM00000243487 +HGNC:39570 THAP12P6 THAP domain containing 12 pseudogene 6 pseudogene pseudogene Approved 13q12.13 13q12.13 PRKRIRP6 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 6 2011-03-14 2016-02-12 2016-02-12 2016-02-12 100128764 ENSG00000227882 OTTHUMG00000016616 NG_011462 PGOHUM00000248546 +HGNC:39574 THAP12P7 THAP domain containing 12 pseudogene 7 pseudogene pseudogene Approved 8q21.13 08q21.13 PRKRIRP7 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 7 2011-03-14 2016-02-12 2016-02-12 2016-10-05 100422712 ENSG00000253919 OTTHUMG00000164621 NG_026040 PGOHUM00000249398 +HGNC:39572 THAP12P8 THAP domain containing 12 pseudogene 8 pseudogene pseudogene Approved 1q43 01q43 PRKRIRP8 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 8 2011-03-14 2016-02-12 2016-02-12 2016-02-12 645939 ENSG00000223963 OTTHUMG00000039933 NG_022760 PGOHUM00000244505 +HGNC:39573 THAP12P9 THAP domain containing 12 pseudogene 9 pseudogene pseudogene Approved 4p12 04p12 PRKRIRP9 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 9 2011-03-14 2016-02-12 2016-02-12 2016-02-12 100131309 ENSG00000248320 OTTHUMG00000160567 NG_022010 PGOHUM00000245510 +HGNC:39741 THAP12P10 THAP domain containing 12 pseudogene 10 pseudogene pseudogene Approved 13q14.2 13q14.2 PRKRIRP10 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) pseudogene 10 2011-03-24 2016-02-12 2016-02-12 2016-02-12 100422715 NG_024925 PGOHUM00000248590 +HGNC:11783 THAS thoracoabdominal syndrome phenotype phenotype only Approved X X 1994-12-20 2000-05-19 7055 2139758 313850 +HGNC:11784 THBD thrombomodulin protein-coding gene gene with protein product Approved 20p11.21 20p11.21 CD141 "CD molecules|C-type lectin domain containing" "471|1298" 2001-06-22 2016-10-12 7056 ENSG00000178726 OTTHUMG00000032053 uc002wss.4 NM_000361 CCDS13148 P07204 MGI:98736 RGD:621299 LRG_168|http://www.lrg-sequence.org/LRG/LRG_168 THBD 188040 120088 CD141 +HGNC:11785 THBS1 thrombospondin 1 protein-coding gene gene with protein product Approved 15q14 15q14 "TSP1|THBS|TSP|THBS-1|TSP-1" thrombospondin-1p180 1989-10-10 2016-10-05 7057 ENSG00000137801 OTTHUMG00000133665 uc001zkh.4 NM_003246 CCDS32194 P07996 "2341158|2335352" MGI:98737 RGD:1588455 THBS1 188060 +HGNC:11786 THBS2 thrombospondin 2 protein-coding gene gene with protein product Approved 6q27 06q27 TSP2 1991-11-21 2015-09-08 7058 ENSG00000186340 OTTHUMG00000045408 uc003qwt.5 NM_003247 CCDS34574 P35442 18455130 MGI:98738 RGD:1310979 THBS2 188061 +HGNC:11787 THBS3 thrombospondin 3 protein-coding gene gene with protein product Approved 1q22 01q22 1994-11-18 2016-10-05 7059 ENSG00000169231 OTTHUMG00000035710 uc001fix.4 L38969 NM_007112 "CCDS1099|CCDS58034|CCDS72937" P49746 1601886 MGI:98739 RGD:1596780 THBS3 188062 +HGNC:11788 THBS4 thrombospondin 4 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 1995-05-17 2016-10-05 7060 ENSG00000113296 OTTHUMG00000108173 uc021yaw.2 XM_017009798 "CCDS4049|CCDS78027" P35443 7852353 MGI:1101779 RGD:62046 THBS4 600715 +HGNC:13706 THEG theg spermatid protein protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "CT56|THEG1" cancer/testis antigen 56 Theg homolog (mouse) 2002-11-08 2012-02-24 2014-11-19 51298 ENSG00000105549 OTTHUMG00000165491 uc002lol.4 AF268610 XM_011528049 "CCDS12025|CCDS12026" Q9P2T0 11173852 MGI:1338756 RGD:1309240 THEG 609503 +HGNC:43771 THEGL theg spermatid protein-like protein-coding gene gene with protein product Approved 4q12 04q12 2012-02-22 2012-02-24 2012-02-24 2015-09-08 100506564 ENSG00000249693 OTTHUMG00000160770 uc031seh.2 DB450279 NM_001256475 CCDS58899 P0DJG4 MGI:1919118 RGD:1562571 THEGL +HGNC:17947 THEM4 thioesterase superfamily member 4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 CTMP C-terminal modulator protein 2005-09-12 2014-11-19 117145 ENSG00000159445 OTTHUMG00000013049 uc001ezj.3 AJ313515 NM_053055 CCDS1006 Q5T1C6 11598301 MGI:1923028 RGD:1304723 THEM4 606388 +HGNC:32692 THEM4P1 thioesterase superfamily member 4 pseudogene 1 pseudogene pseudogene Approved 12p12.1 12p12.1 2006-04-10 2006-04-10 2014-11-18 677880 NG_032023 +HGNC:26755 THEM5 thioesterase superfamily member 5 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 FLJ37964 2005-09-12 2014-11-19 284486 ENSG00000196407 OTTHUMG00000013070 uc021oyw.2 AK095283 NM_182578 CCDS1005 Q8N1Q8 MGI:1913448 RGD:1562059 THEM5 615653 +HGNC:29656 THEM6 thioesterase superfamily member 6 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 DSCD75 C8orf55 chromosome 8 open reading frame 55 2005-08-26 2012-04-13 2012-04-13 2014-11-19 51337 ENSG00000130193 OTTHUMG00000164673 uc003yww.2 BC001311 NM_016647 CCDS6386 Q8WUY1 12477932 MGI:1925301 RGD:1359378 +HGNC:50386 THEM7P thioesterase superfamily member 7, pseudogene pseudogene pseudogene Approved 11p13 11p13 RP1-65P5.1 2014-04-21 2014-04-25 106480297 ENSG00000227160 OTTHUMG00000154120 NG_044232 MGI:1921338 +HGNC:21569 THEMIS thymocyte selection associated protein-coding gene gene with protein product Approved 6q22.33 06q22.33 "bA325O24.4|FLJ40584|bA325O24.3" thymocyte expressed molecule involved in selection "C6orf207|C6orf190|TSEPA" "chromosome 6 open reading frame 207|chromosome 6 open reading frame 190|thymocyte selection pathway associated" 2003-11-25 2009-06-25 2009-06-25 2014-11-19 387357 ENSG00000172673 OTTHUMG00000015534 uc063rfx.1 AK094863 NM_001010923 "CCDS34534|CCDS55055|CCDS55056" Q8N1K5 "19597499|19597498|19597497" MGI:2443552 RGD:1560849 THEMIS 613607 +HGNC:16839 THEMIS2 thymocyte selection associated family member 2 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "ICB-1|Icb-1" induced by contact to basement membrane 1 C1orf38 chromosome 1 open reading frame 38 2003-01-16 2012-07-10 2012-07-10 2016-10-05 9473 ENSG00000130775 OTTHUMG00000003735 uc001bpc.6 AF044896 NM_004848 "CCDS30653|CCDS30654|CCDS41290|CCDS65461" Q5TEJ8 16219472 MGI:2446213 RGD:1561016 +HGNC:49196 THEMIS3P thymocyte selection associated family member 3, pseudogene pseudogene pseudogene Approved 18p11.22 18p11.22 2013-09-26 2013-09-26 100420484 ENSG00000229442 OTTHUMG00000154734 NG_026308 MGI:1921806 PGOHUM00000234982 +HGNC:26053 THG1L tRNA-histidine guanylyltransferase 1 like protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "ICF45|FLJ11601|FLJ20546|IHG-1|hTHG1" "interphase cytoplasmic foci protein 45|induced by high glucose-1" "tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)|tRNA-histidine guanylyltransferase 1-like" 2006-09-01 2016-01-28 2016-01-28 54974 ENSG00000113272 OTTHUMG00000130254 uc003lxd.4 AK223119 NM_017872 CCDS4341 Q9NWX6 11230166 MGI:1913878 RGD:1359513 THG1L +HGNC:11792 THM thymoma phenotype phenotype only Approved reserved reserved 1995-01-27 2005-10-03 7063 "15942943|10644977" 274230 +HGNC:26160 THNSL1 threonine synthase like 1 protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "FLJ22002|TSH1" "threonine synthase-like 1 (bacterial)|threonine synthase-like 1 (S. cerevisiae)|threonine synthase-like 1" 2004-05-27 2015-12-04 2016-10-05 79896 ENSG00000185875 OTTHUMG00000017828 uc057shy.1 AK025655 NM_024838 CCDS7147 Q8IYQ7 17034760 MGI:2139347 RGD:1564213 THNSL1 611260 +HGNC:25602 THNSL2 threonine synthase like 2 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "FLJ10916|TSH2|SOFAT" secreted osteoclastogenic factor of activated T cells threonine synthase-like 2 (S. cerevisiae) 2007-06-20 2016-01-18 2016-01-18 55258 ENSG00000144115 OTTHUMG00000130314 uc002ssy.5 NM_018271 "CCDS2002|CCDS58718|CCDS74539" Q86YJ6 "17034760|19877052" MGI:3041254 RGD:1309144 THNSL2 611261 +HGNC:19070 THOC1 THO complex 1 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 "P84|HPR1" THO complex 770 2002-12-09 2015-08-26 9984 ENSG00000079134 OTTHUMG00000178051 uc002kkj.5 AK055354 NM_005131 CCDS45820 Q96FV9 "11979277|15998806" MGI:1919668 RGD:1308657 THOC1 606930 +HGNC:19073 THOC2 THO complex 2 protein-coding gene gene with protein product Approved Xq25 Xq25 "THO2|dJ506G2.1" "CXorf3|MRX12|MRX35" "chromosome X open reading frame 3|mental retardation, X-linked 12|mental retardation, X-linked 35" "X-linked mental retardation|THO complex" "103|770" 2002-12-09 2004-08-09 2016-10-05 57187 ENSG00000125676 OTTHUMG00000022334 uc004etu.4 AF441770 XM_017029662 CCDS43988 Q8NI27 "11979277|15998806|26166480" MGI:2442413 RGD:1561623 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=THOC2 THOC2 300395 460700 +HGNC:19072 THOC3 THO complex 3 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "TEX1|MGC5469" "WD repeat domain containing|THO complex" "362|770" 2002-12-09 2016-10-05 84321 ENSG00000051596 OTTHUMG00000130658 uc003mdg.6 BC006849 XM_017009985 CCDS4397 Q96J01 "11979277|15998806" MGI:1920916 RGD:1311669 THOC3 606929 +HGNC:19074 THOC5 THO complex 5 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "PK1.3|KIAA0983|Fmip|fSAP79" functional spliceosome-associated protein 79 C22orf19 chromosome 22 open reading frame 19 THO complex 770 2002-12-09 2016-10-05 8563 ENSG00000100296 OTTHUMG00000151291 uc003afu.4 AB023200 NM_003678 CCDS13859 Q13769 "11979277|8242058|10231032|19015024|18373705|15998806" MGI:1351333 RGD:1304991 THOC5 612733 +HGNC:28369 THOC6 THO complex 6 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "MGC2655|fSAP35" functional spliceosome-associated protein 35 WDR58 "WD repeat domain 58|THO complex 6 homolog (Drosophila)" "WD repeat domain containing|THO complex" "362|770" 2005-04-07 2006-03-02 2015-03-30 2015-03-30 79228 ENSG00000131652 OTTHUMG00000177451 uc002ctb.3 BC050674 NM_024339 "CCDS10491|CCDS45392" Q86W42 15998806 MGI:2677480 RGD:708553 THOC6 615403 364390 +HGNC:29874 THOC7 THO complex 7 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "NIF3L1BP1|FLJ23445|fSAP24" "Ngg1 interacting factor 3 like 1 binding protein 1|functional spliceosome-associated protein 24" THO complex 7 homolog (Drosophila) THO complex 770 2006-03-16 2015-03-30 2015-03-30 80145 ENSG00000163634 OTTHUMG00000158767 uc003dlt.6 BC020599 NM_025075 "CCDS2900|CCDS74957" Q6I9Y2 "12951069|15998806" MGI:1913481 RGD:1305475 THOC7 611965 +HGNC:41249 THOC7-AS1 THOC7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.1 03p14.1 THOC7 antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874039 ENSG00000240549 OTTHUMG00000158760 uc032rpy.1 NR_104326 +HGNC:11793 THOP1 thimet oligopeptidase 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 1995-07-06 2015-09-08 7064 ENSG00000172009 OTTHUMG00000180492 uc002lwj.4 XM_011528228 CCDS12095 P52888 9790774 MGI:1354165 RGD:68330 THOP1 601117 M03.001 3.4.24.15 +HGNC:11794 THOP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:11795 THPO thrombopoietin protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "TPO|MPLLG" "prepro-thrombopoietin|megakaryocyte stimulating factor|myeloproliferative leukemia virus oncogene ligand|megakaryocyte growth and development factor|MPL ligand|megakaryocyte colony-stimulating factor|c-mpl ligand|thrombopoietin nirs variant 1" MGDF Endogenous ligands 542 1994-11-04 2008-07-31 2016-10-05 7066 ENSG00000090534 OTTHUMG00000156745 uc003fol.2 NM_000460 "CCDS3265|CCDS54693|CCDS77867" P40225 8202154 MGI:101875 RGD:621438 THPO 600044 120091 +HGNC:11796 THRA thyroid hormone receptor, alpha protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "EAR-7.1/EAR-7.2|THRA3|AR7|ERBA|NR1A1" "THRA1|THRA2|ERBA1" "thyroid hormone receptor, alpha (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog)|thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian)" Nuclear hormone receptors 71 2001-06-22 2011-05-19 2014-11-19 7067 ENSG00000126351 OTTHUMG00000133332 uc002htv.4 J03239 NM_003250 "CCDS11360|CCDS42316|CCDS58546" P10827 "6323162|6589608" MGI:98742 RGD:3857 THRA 190120 292134 objectId:588 +HGNC:22964 THRAP3 thyroid hormone receptor associated protein 3 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 TRAP150 2004-01-30 2014-11-19 9967 ENSG00000054118 OTTHUMG00000007866 uc001cae.5 AF117756 NM_005119 CCDS405 Q9Y2W1 MGI:2442637 RGD:1306129 THRAP3 603809 +HGNC:32386 THRAP3P1 thyroid hormone receptor associated protein 3 pseudogene 1 pseudogene pseudogene Approved 3p23 03p23 THRAP3L thyroid hormone receptor associated protein 3-like 2005-11-15 2010-01-14 2010-01-14 2016-10-05 391524 ENSG00000227339 OTTHUMG00000155810 NG_021114 +HGNC:11799 THRB thyroid hormone receptor beta protein-coding gene gene with protein product Approved 3p24.2 03p24.2 "THRB1|THRB2|NR1A2|THR1|ERBA-BETA|GRTH" "avian erythroblastic leukemia viral (v-erb-a) oncogene homolog 2|oncogene ERBA2|generalized resistance to thyroid hormone|thyroid hormone receptor beta 1" "ERBA2|PRTH" "thyroid hormone receptor, beta (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog 2)|pituitary resistance to thyroid hormone|thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian)|thyroid hormone receptor, beta" Nuclear hormone receptors 71 1988-08-31 2016-02-23 2016-02-23 7068 ENSG00000151090 OTTHUMG00000130478 uc003ccx.5 NM_000461 CCDS2641 P10828 "1973914|8040303" MGI:98743 RGD:3858 THRB 190160 120101 objectId:589 +HGNC:44515 THRB-AS1 THRB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p24.2 03p24.2 2012-11-14 2012-11-14 644990 ENSG00000228791 OTTHUMG00000155683 uc062hof.1 NR_046244 +HGNC:41390 THRB-IT1 THRB intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3p24.2 03p24.2 THRB intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874274 ENSG00000224822 OTTHUMG00000155680 uc062hny.1 +HGNC:49503 THRIL TNF and HNRNPL related immunoregulatory long non-coding RNA non-coding RNA RNA, long non-coding Approved 12q24.31 12q24.31 "Linc1992|TCONS_00020260|BRI3BP-AS1" "TNFalpha and hnRNPL related immunoregulatory LincRNA|BRI3BP antisense RNA 1" Long non-coding RNAs 788 2014-01-01 2014-05-20 102659353 ENSG00000280634 OTTHUMG00000189748 AK025766 NR_110375 24371310 615622 +HGNC:11800 THRSP thyroid hormone responsive protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "SPOT14|Lpgp|S14|THRP" SPOT14 homolog (rat) LPGP1 "thyroid hormone responsive SPOT14 (rat) homolog|lipogenic protein 1" 1996-12-30 2010-06-25 2014-11-19 7069 ENSG00000151365 OTTHUMG00000166632 uc001oyx.4 Y08409 NM_003251 CCDS8256 Q92748 9003802 MGI:109126 RGD:3859 THRSP 601926 +HGNC:17754 THSD1 thrombospondin type 1 domain containing 1 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 TMTSP thrombospondin, type I, domain 1 2003-01-24 2015-11-09 2016-10-05 55901 ENSG00000136114 OTTHUMG00000016963 uc001vgo.4 AK096289 NM_018676 "CCDS9432|CCDS9433" Q9NS62 MGI:1929096 RGD:1306998 THSD1 616821 +HGNC:31375 THSD1P1 thrombospondin type 1 domain containing 1 pseudogene 1 pseudogene pseudogene Approved 13q14.2 13q14.2 THSD1P thrombospondin, type I, domain containing 1 pseudogene 2004-03-17 2010-04-20 2015-11-09 2015-11-09 374500 AK027536 NG_032770 PGOHUM00000248403 +HGNC:25835 THSD4 thrombospondin type 1 domain containing 4 protein-coding gene gene with protein product Approved 15q23 15q23 "FVSY9334|PRO34005|FLJ13710|ADAMTSL6" ADAMTS like 947 2006-02-08 2015-11-09 2015-11-09 79875 ENSG00000187720 OTTHUMG00000133389 uc002atb.2 AK023772 NM_024817 "CCDS10238|CCDS66817" Q6ZMP0 19734141 MGI:2672033 RGD:1566296 THSD4 614476 +HGNC:51420 THSD4-AS1 THSD4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q23 15q23 2014-11-21 2014-11-21 101929196 ENSG00000259964 OTTHUMG00000172838 "DA243226|DA296094" NR_120348 +HGNC:51421 THSD4-AS2 THSD4 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 15q23 15q23 2014-11-21 2014-11-21 101929173 AK055527 NR_120346 +HGNC:22207 THSD7A thrombospondin type 1 domain containing 7A protein-coding gene gene with protein product Approved 7p21.3 07p21.3 KIAA0960 2006-10-16 2015-11-09 2015-11-09 221981 ENSG00000005108 OTTHUMG00000152346 uc064bok.1 XM_928187.2 CCDS47543 Q9UPZ6 MGI:2685683 RGD:1566201 THSD7A 612249 +HGNC:29348 THSD7B thrombospondin type 1 domain containing 7B protein-coding gene gene with protein product Approved 2q22.1 02q22.1 KIAA1679 2006-10-16 2015-11-09 2015-11-09 80731 ENSG00000144229 OTTHUMG00000153590 uc061ock.1 XM_046570.9 CCDS82515 Q9C0I4 11214970 MGI:2443925 RGD:1306938 THSD7B +HGNC:18987 THTPA thiamine triphosphatase protein-coding gene gene with protein product Approved 14q11.2 14q11.2 THTPASE 2002-07-25 2015-08-14 79178 ENSG00000259431 OTTHUMG00000172558 uc001wkg.7 AF432862 NM_024328 "CCDS32053|CCDS58306|CCDS58307" Q9BU02 11827967 MGI:2446078 RGD:727917 THTPA 611612 3.6.1.28 +HGNC:23807 THUMPD1 THUMP domain containing 1 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "FLJ20274|Tan1" 2004-06-04 2016-10-05 55623 ENSG00000066654 OTTHUMG00000131558 uc002dhp.5 BC000448 NM_017736 CCDS10588 Q9NXG2 25653167 MGI:2444479 RGD:1308854 THUMPD1 616662 +HGNC:23808 THUMPD1P1 THUMP domain containing 1 pseudogene 1 pseudogene pseudogene Approved 21q21.3 21q21.3 2010-06-17 2014-11-19 391276 ENSG00000215317 OTTHUMG00000078749 NG_021991 PGOHUM00000239059 +HGNC:14890 THUMPD2 THUMP domain containing 2 protein-coding gene gene with protein product Approved 2p22.1 02p22.1 MGC2454 C2orf8 chromosome 2 open reading frame 8 2003-07-04 2004-06-04 2004-06-04 2016-10-05 80745 ENSG00000138050 OTTHUMG00000102149 uc002rru.3 AF380576 NM_025264 CCDS1805 Q9BTF0 12063391 MGI:1919417 RGD:1306878 THUMPD2 611751 +HGNC:24493 THUMPD3 THUMP domain containing 3 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 DKFZP434F091 2004-06-04 2014-11-19 25917 ENSG00000134077 OTTHUMG00000097031 uc003brn.5 AL117483 NM_015453 CCDS2573 Q9BV44 12477932 MGI:1277973 RGD:1560852 THUMPD3 +HGNC:44478 THUMPD3-AS1 THUMPD3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p25.3 03p25.3 SETD5-AS1 SETD5 antisense RNA 1 2012-11-05 2014-01-14 2014-01-14 2014-01-14 440944 ENSG00000206573 OTTHUMG00000164357 BC052961 NR_027007 MGI:104735 RGD:6491660 +HGNC:50793 THUMPD3P1 THUMP domain containing 3 pseudogene 1 pseudogene pseudogene Approved 7p14.1 07p14.1 2014-06-18 2014-06-18 100419989 ENSG00000248711 OTTHUMG00000155106 NG_026557 PGOHUM00000233203 +HGNC:11801 THY1 Thy-1 cell surface antigen protein-coding gene gene with protein product Approved 11q23.3 11q23.3 CD90 "CD molecules|Immunoglobulin like domain containing" "471|594" 2001-06-22 2015-07-22 7070 ENSG00000154096 OTTHUMG00000166202 uc001pwr.4 M11749 NM_006288 CCDS8424 P04216 2864690 MGI:98747 RGD:3860 THY1 188230 CD90 +HGNC:29560 THYN1 thymocyte nuclear protein 1 protein-coding gene gene with protein product Approved 11q25 11q25 THY28 2005-11-10 2014-11-18 29087 ENSG00000151500 OTTHUMG00000167176 uc001qhf.4 BC006978 NM_014174 "CCDS8496|CCDS8497" Q9P016 "14601557|12384300" MGI:1925112 RGD:1359525 THYN1 613739 +HGNC:11802 TIA1 TIA1 cytotoxic granule associated RNA binding protein protein-coding gene gene with protein product Approved 2p13.3 02p13.3 "T-cell-restricted intracellular antigen-1|nucleolysin TIA-1 isoform p40" TIA1 cytotoxic granule-associated RNA-binding protein RNA binding motif containing 725 1995-11-01 2016-08-11 2016-10-05 7072 ENSG00000116001 OTTHUMG00000129644 uc002sgk.5 NM_022037 "CCDS1900|CCDS1901" P31483 "8176212|12486009" MGI:107914 RGD:1305742 TIA1 603518 327795 +HGNC:11803 TIAF1 TGFB1-induced anti-apoptotic factor 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 1999-05-14 2014-11-19 9220 ENSG00000221995 OTTHUMG00000163268 uc002hdv.2 AF105277 NM_004740 CCDS32599 O95411 9918798 TIAF1 609517 +HGNC:11804 TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding gene gene with protein product Approved 10q26.11 10q26.11 TIAR TIA1 cytotoxic granule-associated RNA-binding protein-like 1 RNA binding motif containing 725 1995-11-01 2016-08-11 2016-10-05 7073 ENSG00000151923 OTTHUMG00000019156 uc001lei.2 AL833106 "NM_022333|NM_003252" "CCDS7613|CCDS31295" Q01085 1326761 MGI:107913 RGD:1595845 TIAL1 603413 +HGNC:11805 TIAM1 T-cell lymphoma invasion and metastasis 1 protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|PDZ domain containing" "682|722|1220" 1994-04-22 2016-10-05 7074 ENSG00000156299 OTTHUMG00000084869 uc002yow.2 NM_003253 CCDS13609 Q13009 "8595894|15340013" MGI:103306 RGD:1307455 TIAM1 600687 +HGNC:11806 TIAM2 T-cell lymphoma invasion and metastasis 2 protein-coding gene gene with protein product Approved 6q25.2-q25.3 06q25.2-q25.3 STEF "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|PDZ domain containing" "682|722|1220" 1999-12-02 2016-10-11 26230 ENSG00000146426 OTTHUMG00000015880 uc003qqb.3 NM_012454 "CCDS34558|CCDS34559" Q8IVF5 10512681 MGI:1344338 RGD:2324148 TIAM2 604709 +HGNC:18348 TICAM1 toll like receptor adaptor molecule 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "TRIF|TICAM-1|MGC35334|PRVTIRB" toll-like receptor adaptor molecule 1 TIR domain containing 1296 2005-06-27 2016-01-21 2016-10-12 148022 ENSG00000127666 OTTHUMG00000180248 uc002mbi.5 AB086380 NM_014261 CCDS12136 Q8IUC6 "12539043|12471095" MGI:2147032 RGD:1590868 LRG_358|http://www.lrg-sequence.org/LRG/LRG_358 TICAM1 607601 292419 +HGNC:21354 TICAM2 toll like receptor adaptor molecule 2 protein-coding gene gene with protein product Approved 5q22.3 05q22.3 "TRAM|TICAM-2|TIRP" toll-like receptor adaptor molecule 2 TIR domain containing 1296 2004-07-02 2016-01-21 2016-01-21 353376 ENSG00000243414 OTTHUMG00000162905 uc003krc.4 AY232653 NM_021649 CCDS4119 Q86XR7 MGI:3040056 RGD:1308258 TICAM2 608321 +HGNC:28704 TICRR TOPBP1 interacting checkpoint and replication regulator protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "MGC45866|FLJ41618|Treslin|SLD3" "TOPBP1-interacting replication-stimulating protein|SLD3 homolog (S. cerevisiae)" C15orf42 chromosome 15 open reading frame 42 2005-10-25 2012-07-11 2016-02-22 2016-02-22 90381 ENSG00000140534 OTTHUMG00000149648 uc002boe.4 AK123612 NM_152259 "CCDS10352|CCDS76791" Q7Z2Z1 "20116089|20080954" MGI:1924261 RGD:1308541 613298 +HGNC:11809 TIE1 tyrosine kinase with immunoglobulin like and EGF like domains 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 JTK14 TIE "tyrosine kinase with immunoglobulin and epidermal growth factor homology domains 1|tyrosine kinase with immunoglobulin-like and EGF-like domains 1" "Receptor Tyrosine Kinases|Fibronectin type III domain containing|Immunoglobulin like domain containing" "321|555|594" 1993-08-24 2004-12-14 2016-01-21 2016-10-05 7075 ENSG00000066056 OTTHUMG00000007282 uc001ciu.4 BC038239 NM_005424 CCDS482 P35590 1312667 MGI:99906 RGD:621642 TIE1 600222 objectId:1841 2.7.10.1 +HGNC:19075 TIFA TRAF interacting protein with forkhead associated domain protein-coding gene gene with protein product Approved 4q25 04q25 "MGC20791|T2BP|T6BP|TIFAA" "TRAF2 binding protein|TRAF6 binding protein" TRAF-interacting protein with forkhead-associated domain 2008-03-17 2016-01-28 2016-01-28 92610 ENSG00000145365 OTTHUMG00000161066 uc003ial.4 BC008294 NM_052864 CCDS34051 Q96CG3 1179819 MGI:2182965 RGD:1359151 TIFA 609028 +HGNC:34024 TIFAB TIFA inhibitor protein-coding gene gene with protein product Approved 5q31.1 05q31.1 TRAF-interacting protein with forkhead-associated domain, family member B 2008-03-17 2016-01-28 2016-01-28 497189 ENSG00000255833 OTTHUMG00000129140 uc003law.5 AB161513 NM_001099221 CCDS43365 Q6ZNK6 15047173 MGI:2385852 RGD:1311681 TIFAB 612663 +HGNC:1185 TIGAR TP53 induced glycolysis regulatory phosphatase protein-coding gene gene with protein product Approved 12p13.32 12p13.32 TP53-induced glycolysis and apoptosis regulator C12orf5 chromosome 12 open reading frame 5 Sugar phosphatases 1073 2000-08-24 2015-04-01 2015-04-01 2015-08-13 57103 ENSG00000078237 OTTHUMG00000168124 AJ272206 NM_020375 CCDS8525 Q9NQ88 "18945750|19713938|2442317" MGI:2442752 RGD:1560038 610775 3.1.3.46 +HGNC:14523 TIGD1 tigger transposable element derived 1 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 EEYORE Helix-turn-helix CENPB type domain containing 533 2002-07-22 2014-11-19 200765 ENSG00000221944 OTTHUMG00000133260 uc002vsy.3 NM_145702 CCDS2495 Q96MW7 TIGD1 612972 +HGNC:18333 TIGD2 tigger transposable element derived 2 protein-coding gene gene with protein product Approved 4q22.1 04q22.1 Helix-turn-helix CENPB type domain containing 533 2002-07-22 2016-10-05 166815 ENSG00000180346 OTTHUMG00000130946 uc062yek.1 AK027653 NM_145715 CCDS3633 Q4W5G0 MGI:1915390 RGD:1559612 TIGD2 612973 +HGNC:18334 TIGD3 tigger transposable element derived 3 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 Helix-turn-helix CENPB type domain containing 533 2002-07-22 2015-08-26 220359 ENSG00000173825 OTTHUMG00000165986 uc001odo.5 NM_145719 CCDS8101 Q6B0B8 MGI:2681860 RGD:1305393 TIGD3 +HGNC:18335 TIGD4 tigger transposable element derived 4 protein-coding gene gene with protein product Approved 4q31.23 04q31.23 Helix-turn-helix CENPB type domain containing 533 2002-07-22 2014-11-19 201798 ENSG00000169989 OTTHUMG00000161464 uc003imy.3 AK058054 NM_145720 CCDS34079 Q8IY51 MGI:2685264 RGD:1305780 TIGD4 +HGNC:18336 TIGD5 tigger transposable element derived 5 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FLJ14926 Helix-turn-helix CENPB type domain containing 533 2002-07-22 2016-04-25 84948 ENSG00000179886 OTTHUMG00000162260 uc003yyx.3 AK027832 NM_032862 CCDS6406 Q53EQ6 MGI:2145902 RGD:1311576 TIGD5 +HGNC:18332 TIGD6 tigger transposable element derived 6 protein-coding gene gene with protein product Approved 5q32 05q32 DKFZp761E2110 Helix-turn-helix CENPB type domain containing 533 2002-07-22 2016-10-05 81789 ENSG00000164296 OTTHUMG00000130045 uc003lrj.4 AK056604 NM_030953 CCDS4301 Q17RP2 11230166 TIGD6 +HGNC:18331 TIGD7 tigger transposable element derived 7 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Sancho Helix-turn-helix CENPB type domain containing 533 2002-07-22 2016-10-05 91151 ENSG00000140993 OTTHUMG00000129325 uc002cus.4 AF251050 NM_033208 CCDS10500 Q6NT04 TIGD7 612969 +HGNC:26838 TIGIT T-cell immunoreceptor with Ig and ITIM domains protein-coding gene gene with protein product Approved 3q13.31 03q13.31 "FLJ39873|DKFZp667A205" "VSIG9|VSTM3" "V-set and immunoglobulin domain containing 9|V-set and transmembrane domain containing 3|T cell immunoreceptor with Ig and ITIM domains" V-set domain containing 590 2006-02-07 2008-10-13 2015-11-13 2015-11-13 201633 ENSG00000181847 OTTHUMG00000159331 uc062mqn.1 AK097192 NM_173799 CCDS2980 Q495A1 19011627 MGI:3642260 RGD:1563191 TIGIT 612859 +HGNC:25132 TIMD4 T-cell immunoglobulin and mucin domain containing 4 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 V-set domain containing 590 2004-07-22 2014-11-19 91937 ENSG00000145850 OTTHUMG00000130244 uc003lwh.2 BC008988 NM_138379 "CCDS4332|CCDS54943" Q96H15 12477932 MGI:2445125 RGD:1564516 TIMD4 610096 +HGNC:11813 TIMELESS timeless circadian clock protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "hTIM|TIM|TIM1" "Tof1 homolog (S. cerevisiae)|timeless circadian clock 1" "timeless (Drosophila) homolog|timeless homolog (Drosophila)" 1999-01-08 2012-12-14 2015-08-26 8914 ENSG00000111602 OTTHUMG00000170600 uc001slf.3 AF098162 NM_003920 "CCDS8918|CCDS81699" Q9UNS1 9856465 MGI:1321393 RGD:620939 TIMELESS 603887 +HGNC:11817 TIMM8A translocase of inner mitochondrial membrane 8 homolog A (yeast) protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "DDP|MTS" DFN1 translocase of inner mitochondrial membrane 8 (yeast) homolog A 1999-12-01 2001-11-28 2016-10-05 1678 ENSG00000126953 OTTHUMG00000022028 uc004ehd.3 U66035 NM_004085 CCDS14481 O60220 "10552927|8841189" MGI:1353433 RGD:621801 TIMM8A 300356 120107 +HGNC:17802 TIMM8AP1 translocase of inner mitochondrial membrane 8 homolog A (yeast) pseudogene 1 pseudogene pseudogene Approved 2q24.2 02q24.2 DDPP deafness dystonia pseudogene TIMM8AP translocase of inner mitochondrial membrane 8 homolog A (yeast) pseudogene 2007-07-26 2010-02-24 2010-02-24 2014-11-19 399520 ENSG00000231445 OTTHUMG00000154346 U66034 NG_003187.2 8841189 PGOHUM00000240411 +HGNC:11818 TIMM8B translocase of inner mitochondrial membrane 8 homolog B protein-coding gene gene with protein product Approved 11q23.1 11q23.1 "TIM8B|DDP2|FLJ21744|MGC102866|MGC117373" mitochondrial import inner membrane translocase subunit Tim8 B translocase of inner mitochondrial membrane 8 homolog B (yeast) 1999-12-01 2016-06-21 2016-10-05 26521 ENSG00000150779 OTTHUMG00000162261 uc058hho.1 AF150087 NM_012459 CCDS8357 Q9Y5J9 10552927 MGI:1353424 RGD:619840 TIMM8B 606659 +HGNC:39211 TIMM8BP1 translocase of inner mitochondrial membrane 8B pseudogene 1 pseudogene pseudogene Approved 13q12.3 13q12.3 2010-11-23 2010-11-23 100874425 ENSG00000236258 OTTHUMG00000016660 NG_032236 PGOHUM00000248350 +HGNC:39212 TIMM8BP2 translocase of inner mitochondrial membrane 8B pseudogene 2 pseudogene pseudogene Approved Xq26.2 Xq26.2 2010-11-23 2010-11-23 100874417 ENSG00000224908 OTTHUMG00000022449 NG_032237 PGOHUM00000250087 +HGNC:11819 TIMM9 translocase of inner mitochondrial membrane 9 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 TIM9A "translocase of inner mitochondrial membrane 9 (yeast) homolog|translocase of inner mitochondrial membrane 9 homolog (yeast)" TIM22 complex 1337 1999-12-01 2016-02-29 2016-02-29 26520 ENSG00000100575 OTTHUMG00000140322 uc001xds.4 AF150100 NM_012460 "CCDS9735|CCDS76685" Q9Y5J7 "10552927|14726512" MGI:1353436 RGD:621656 TIMM9 607384 +HGNC:39928 TIMM9P1 TIMM9 pseudogene 1 pseudogene pseudogene Approved 10q22.2 10q22.2 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 1 2011-04-12 2014-12-17 2014-12-17 100862726 ENSG00000236900 OTTHUMG00000018503 NG_032133 PGOHUM00000238535 +HGNC:39929 TIMM9P2 TIMM9 pseudogene 2 pseudogene pseudogene Approved 21q22.2 21q22.2 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 2 2011-04-12 2014-12-17 2014-12-17 100862727 ENSG00000232608 OTTHUMG00000066153 NG_032134 PGOHUM00000239177 +HGNC:39930 TIMM9P3 TIMM9 pseudogene 3 pseudogene pseudogene Approved 13q14.13 13q14.13 translocase of inner mitochondrial membrane 9 homolog (yeast) pseudogene 3 2011-04-12 2014-12-17 2014-12-17 100862725 ENSG00000232786 OTTHUMG00000016857 NG_032132 PGOHUM00000248390 +HGNC:11814 TIMM10 translocase of inner mitochondrial membrane 10 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "TIM10|TIM10A|TIMM10A" "translocase of inner mitochondrial membrane 10 (yeast) homolog|translocase of inner mitochondrial membrane 10 homolog (yeast)" TIM22 complex 1337 1999-12-01 2016-09-30 2016-09-30 26519 ENSG00000134809 OTTHUMG00000167039 uc001nkm.2 AF152354 NM_012456 CCDS7959 P62072 10552927 MGI:1353429 RGD:621741 TIMM10 602251 +HGNC:4022 TIMM10B translocase of inner mitochondrial membrane 10B protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "Tim9b|TIM10B" FXC1 "fracture callus 1 (rat) homolog|fracture callus 1 homolog (rat)|translocase of inner mitochondrial membrane 10 homolog B (yeast)" TIM22 complex 1337 1999-12-01 2012-12-07 2016-09-30 2016-09-30 26515 ENSG00000132286 OTTHUMG00000179826 uc001mdn.5 AF150105 NM_012192 CCDS7766 Q9Y5J6 10552927 MGI:1315196 RGD:71097 607388 +HGNC:11816 TIMM13 translocase of inner mitochondrial membrane 13 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 Tim13 TIMM13B "translocase of inner mitochondrial membrane 13 (yeast) homolog B|translocase of inner mitochondrial membrane 13 homolog (yeast)" 1999-12-01 2002-03-17 2016-02-29 2016-02-29 26517 ENSG00000099800 OTTHUMG00000180432 uc002lvx.3 AF152352 NM_012458 CCDS12089 Q9Y5L4 "10552927|17329230" MGI:1353432 RGD:628845 TIMM13 607383 +HGNC:11815 TIMM13A entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:17315 TIMM17A translocase of inner mitochondrial membrane 17 homolog A (yeast) protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "TIM17|TIM17A" 2002-01-15 2015-08-26 10440 ENSG00000134375 OTTHUMG00000035806 uc001gxc.3 AF106622 NM_006335 CCDS1417 Q99595 "8893850|10339406" MGI:1343131 RGD:3862 TIMM17A 605057 +HGNC:17310 TIMM17B translocase of inner mitochondrial membrane 17 homolog B (yeast) protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "DXS9822|JM3" 2002-01-15 2015-08-26 10245 ENSG00000126768 OTTHUMG00000034498 uc004dlc.2 AF034790 NM_005834 "CCDS14308|CCDS55411" O60830 10339406 MGI:1343176 RGD:1561744 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TIMM17B TIMM17B 300249 +HGNC:49865 TIMM17BP1 translocase of inner mitochondrial membrane 17 homolog B (yeast) pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 2014-03-18 2014-03-18 390298 ENSG00000256756 OTTHUMG00000168807 NG_030132 PGOHUM00000239693 +HGNC:25010 TIMM21 translocase of inner mitochondrial membrane 21 protein-coding gene gene with protein product Approved 18q22.3 18q22.3 "HSPC154|TIM21" C18orf55 "chromosome 18 open reading frame 55|translocase of inner mitochondrial membrane 21 homolog (yeast)" 2005-01-06 2011-11-25 2016-03-07 2016-03-07 29090 ENSG00000075336 OTTHUMG00000132844 uc010dqr.2 BC000892 NM_014177 CCDS12003 Q9BVV7 "11042152|23260140" MGI:1920595 RGD:1307279 615180 +HGNC:17317 TIMM22 translocase of inner mitochondrial membrane 22 protein-coding gene gene with protein product Approved 17p13 17p13 TIM22 TEX4 "testis-expressed sequence 4|translocase of inner mitochondrial membrane 22 homolog (yeast)" TIM22 complex 1337 2002-01-15 2016-09-30 2016-09-30 29928 ENSG00000177370 OTTHUMG00000180175 uc002fsc.4 AF155330 NM_013337 CCDS32521 Q9Y584 "10611480|14726512" MGI:1929742 RGD:68406 TIMM22 607251 +HGNC:17312 TIMM23 translocase of inner mitochondrial membrane 23 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 TIM23 translocase of inner mitochondrial membrane 23 homolog (yeast) 2002-01-15 2016-03-07 2016-03-07 100287932 ENSG00000265354 OTTHUMG00000188299 uc001jiu.5 AF030162 NM_006327.2 CCDS73091 O14925 "10339406|23260140" MGI:1858317 RGD:3863 TIMM23 605034 +HGNC:23581 TIMM23B translocase of inner mitochondrial membrane 23 homolog B protein-coding gene gene with protein product Approved 10q11.23 10q11.23 bA592B15.7 translocase of inner mitochondrial membrane 23 homolog B (yeast) 2004-05-28 2016-03-07 2016-03-07 100652748 ENSG00000204152 OTTHUMG00000018213 uc031wgt.2 XM_005278340 "CCDS73131|CCDS76301" Q5SRD1 MGI:1858317 TIMM23B +HGNC:25152 TIMM29 translocase of inner mitochondrial membrane 29 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 C19orf52 chromosome 19 open reading frame 52 TIM22 complex 1337 2006-08-08 2016-09-30 2016-09-30 2016-09-30 90580 ENSG00000142444 OTTHUMG00000180700 uc002mqd.3 BC011833 NM_138358 CCDS12252 Q9BSF4 27554484 MGI:1917023 RGD:1309188 +HGNC:17316 TIMM44 translocase of inner mitochondrial membrane 44 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 TIM44 translocase of inner mitochondrial membrane 44 homolog (yeast) 2002-01-15 2016-03-07 2016-03-07 10469 ENSG00000104980 OTTHUMG00000182478 uc002miz.4 AF026030 NM_006351 CCDS12192 O43615 "10848612|10339406" MGI:1343262 RGD:3864 TIMM44 605058 +HGNC:23656 TIMM50 translocase of inner mitochondrial membrane 50 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 TIM50L translocase of inner mitochondrial membrane 50 homolog (yeast) CTD family phosphatases 1041 2003-12-02 2016-03-07 2016-03-07 92609 ENSG00000105197 OTTHUMG00000183066 uc002olu.1 BC009072 NM_001001563 CCDS33023 Q3ZCQ8 "12437925|21930695" MGI:1913775 RGD:1587684 TIMM50 607381 +HGNC:1321 TIMMDC1 translocase of inner mitochondrial membrane domain containing 1 protein-coding gene gene with protein product Approved 3q13.33 03q13.33 FLJ22597 C3orf1 chromosome 3 open reading frame 1 Mitochondrial respiratory chain complex assembly factors 645 1999-12-07 2011-07-05 2011-07-05 2015-08-26 51300 ENSG00000113845 OTTHUMG00000159388 uc003ecn.4 AF210057 NM_016589 CCDS33831 Q9NPL8 "11092749|24344204" MGI:1922139 RGD:1359380 TIMMDC1 615534 +HGNC:11820 TIMP1 TIMP metallopeptidase inhibitor 1 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 EPO "TIMP|CLGI" tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor) Tissue inhibitor of metallopeptidases 892 1986-01-01 2005-08-08 2016-10-05 7076 ENSG00000102265 OTTHUMG00000021447 uc004dif.4 NM_003254 CCDS14281 P01033 MGI:98752 RGD:621675 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TIMP1 TIMP1 305370 I35.001 +HGNC:11821 TIMP2 TIMP metallopeptidase inhibitor 2 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 CSC-21K tissue inhibitor of metalloproteinase 2 Tissue inhibitor of metallopeptidases 892 1992-06-18 2005-08-08 2016-10-05 7077 ENSG00000035862 OTTHUMG00000154517 uc002jwf.4 NM_003255 CCDS11758 P16035 1427908 MGI:98753 RGD:61312 TIMP2 188825 I35.002 +HGNC:11822 TIMP3 TIMP metallopeptidase inhibitor 3 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 SFD tissue inhibitor of metalloproteinase 3 (Sorsby fundus dystrophy, pseudoinflammatory) Tissue inhibitor of metallopeptidases 892 1993-04-12 2008-07-31 2014-11-19 7078 ENSG00000100234 OTTHUMG00000030784 uc003anb.4 NM_000362 CCDS13911 P35625 "8188246|12652295" MGI:98754 RGD:3865 Mutations of the Tissue Inhibitor of Metalloproteases 3 Gene|http://www.retina-international.org/files/sci-news/timpmut.htm TIMP3 188826 120112 I35.003 +HGNC:11823 TIMP4 TIMP metallopeptidase inhibitor 4 protein-coding gene gene with protein product Approved 3p25.2 03p25.2 tissue inhibitor of metalloproteinase 4 Tissue inhibitor of metallopeptidases 892 1997-07-07 2005-08-08 2016-10-05 7079 ENSG00000157150 OTTHUMG00000129763 uc003bwo.4 U76456 NM_003256 CCDS2608 Q99727 "8939999|9693046" MGI:109125 RGD:69077 TIMP4 601915 I35.004 +HGNC:14599 TINAG tubulointerstitial nephritis antigen protein-coding gene gene with protein product Approved 6p12.1 06p12.1 2001-04-05 2015-09-08 27283 ENSG00000137251 OTTHUMG00000014893 uc003pcj.3 AB022277 NM_014464 CCDS4955 Q9UJW2 10652240 MGI:1349477 RGD:1359482 TINAG 606749 C01.973 +HGNC:19168 TINAGL1 tubulointerstitial nephritis antigen like 1 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "P3ECSL|LIECG3|ARG1|TINAGRP" LCN7 "lipocalin 7|TINAG-like 1" 2002-08-29 2005-08-18 2016-03-11 2016-10-05 64129 ENSG00000142910 OTTHUMG00000003884 uc001bta.4 AB050716 NM_022164 "CCDS343|CCDS55586|CCDS72745" Q9GZM7 11170462 MGI:2137617 RGD:70956 TINAGL1 616064 C01.975 +HGNC:14607 TINCR tissue differentiation-inducing non-protein coding RNA non-coding RNA RNA, long non-coding Approved 19p13.3 19p13.3 "FLJ90734|NCRNA00036|LINC00036|onco-lncRNA-16" "non-protein coding RNA 36|long intergenic non-protein coding RNA 36|terminal differentiation-induced ncRNA" PLAC2 "placenta-specific 2|placenta-specific 2 (non-protein coding)" Long non-coding RNAs 788 2002-04-03 2012-12-05 2012-12-05 2015-07-29 257000 ENSG00000223573 OTTHUMG00000150390 uc002mcc.7 BG354568 NR_027064 "23201690|24019000" RGD:9685200 615241 +HGNC:11824 TINF2 TERF1 interacting nuclear factor 2 protein-coding gene gene with protein product Approved 14q12 14q12 TIN2 TERF1 (TRF1)-interacting nuclear factor 2 Shelterin complex 1334 1999-11-19 2016-05-04 2016-05-04 26277 ENSG00000092330 OTTHUMG00000171849 uc001woa.5 AF195512 XM_005267529 "CCDS41936|CCDS41937" Q9BSI4 "10581025|18252230" MGI:107246 RGD:1359192 TINF2 604319 140050 +HGNC:23696 TIPARP TCDD inducible poly(ADP-ribose) polymerase protein-coding gene gene with protein product Approved 3q25.31 03q25.31 "DKFZP434J214|DKFZp686N0351|DDF1|PARP7|PARP-7|PARP-1|pART14|RM1" TCDD-inducible poly(ADP-ribose) polymerase Poly(ADP-ribose) polymerases 684 2003-12-02 2016-04-04 2016-04-04 25976 ENSG00000163659 OTTHUMG00000158646 uc003fav.4 BX537965 NM_015508 CCDS3177 Q7Z3E1 12851707 MGI:2159210 RGD:1306171 TIPARP 612480 +HGNC:41028 TIPARP-AS1 TIPARP antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.31 03q25.31 TIPARP antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100287227 ENSG00000243926 OTTHUMG00000158643 uc062pgr.1 NR_027954 +HGNC:30750 TIPIN TIMELESS interacting protein protein-coding gene gene with protein product Approved 15q22.31 15q22.31 FLJ20516 CSM3 homolog (S. cerevisiae) 2006-08-08 2006-08-08 2014-11-19 54962 ENSG00000075131 OTTHUMG00000133188 uc002apr.3 BK001386 NM_017858 CCDS10215 Q9BVW5 "12875843|17102137" MGI:1921571 RGD:1564084 TIPIN 610716 +HGNC:30231 TIPRL TOR signaling pathway regulator protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "MGC3794|dJ69E11.3|TIP41|TIPRL1" TIP41, TOR signaling pathway regulator-like (S. cerevisiae) Protein phosphatase 2 modulatory subunits 1265 2005-05-27 2014-03-07 2016-10-05 261726 ENSG00000143155 OTTHUMG00000034646 uc001gfg.5 AB097034 NM_152902 "CCDS1270|CCDS30935" O75663 12761501 MGI:1915087 RGD:1310442 TIPRL 611807 +HGNC:17192 TIRAP TIR domain containing adaptor protein protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "Mal|wyatt" MyD88 adapter-like Toll-interleukin 1 receptor (TIR) domain-containing adaptor protein TIR domain containing 1296 2003-06-05 2016-06-17 2016-06-17 114609 ENSG00000150455 OTTHUMG00000140373 uc001qdo.1 AF378129 NM_148910 "CCDS8472|CCDS41731" P58753 "11526399|11544529" MGI:2152213 RGD:1595496 TIRAP 606252 +HGNC:17949 TJAP1 tight junction associated protein 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 PILT TJP4 "tight junction protein 4 (peripheral)|tight junction associated protein 1 (peripheral)" 2002-01-10 2005-07-05 2016-03-11 2016-03-11 93643 ENSG00000137221 OTTHUMG00000014736 uc011dvh.1 AK024269 NM_080604 "CCDS4898|CCDS55004" Q5JTD0 11602598 MGI:1921344 RGD:1308708 TJAP1 612658 +HGNC:11827 TJP1 tight junction protein 1 protein-coding gene gene with protein product Approved 15q13.1 15q13.1 "ZO-1|MGC133289|DKFZp686M05161" "zona occludens 1|tight junction protein ZO-1" "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 1995-04-26 2012-07-12 2016-10-05 7082 ENSG00000104067 OTTHUMG00000137397 uc001zcr.4 NM_003257 "CCDS42007|CCDS45199|CCDS73702|CCDS81858" Q07157 8825647 MGI:98759 RGD:1306305 TJP1 601009 +HGNC:14167 TJP1P1 tight junction protein 1 pseudogene 1 pseudogene pseudogene Approved 16p13.3 16p13.3 TJP1P tight junction protein 1 pseudogene 2000-12-21 2016-02-17 2016-02-17 2016-02-17 64730 NG_032180 +HGNC:11828 TJP2 tight junction protein 2 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 "ZO-2|X104|ZO2" "Friedreich ataxia region gene X104 (tight junction protein ZO-2)|zona occludens 2" DFNA51 deafness, autosomal dominant 51 "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 1999-07-01 2012-07-12 2016-10-05 9414 ENSG00000119139 OTTHUMG00000019978 uc011lrv.2 L27476 NM_201629 "CCDS6627|CCDS6628|CCDS55315|CCDS55316|CCDS55317" Q9UDY2 "7951235|20602916" MGI:1341872 RGD:619807 TJP2 607709 242924 +HGNC:11829 TJP3 tight junction protein 3 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ZO-3 zona occludens 3 "Membrane associated guanylate kinases|PDZ domain containing" "904|1220" 2000-02-16 2012-07-12 2016-04-25 27134 ENSG00000105289 OTTHUMG00000180872 uc010xhs.4 AC005954 NM_001267560 "CCDS32873|CCDS59332" O95049 MGI:1351650 RGD:1309247 TJP3 612689 +HGNC:11830 TK1 thymidine kinase 1 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 thymidine kinase 1, soluble 2001-06-22 2016-04-05 2016-10-05 7083 ENSG00000167900 OTTHUMG00000150674 uc002juw.3 NM_003258 CCDS11754 P04183 MGI:98763 RGD:621014 TK1 188300 2.7.1.21 +HGNC:11831 TK2 thymidine kinase 2, mitochondrial protein-coding gene gene with protein product Approved 16q21 16q21 SCA31 2001-06-22 2016-10-05 7084 ENSG00000166548 OTTHUMG00000137499 uc002eos.3 NM_004614 "CCDS10805|CCDS54016|CCDS54017|CCDS54018|CCDS61955" O00142 MGI:1913266 RGD:1309279 TK2 188250 120120 2.7.1.21 +HGNC:11833 TKCR torticollis, keloids, cryptorchidism and renal dysplasia phenotype phenotype only Approved Xq28-qter Xq28-qter TKC 2001-06-22 2012-10-02 7085 6132873 314300 +HGNC:24552 TKFC triokinase and FMN cyclase protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "DKFZP586B1621|NET45" FAD-AMP lyase (cyclizing) DAK "dihydroxyacetone kinase 2 homolog (yeast)|dihydroxyacetone kinase 2 homolog (S. cerevisiae)|triokinase/FMN cyclase" 2005-10-07 2015-03-20 2016-01-18 2016-01-18 26007 ENSG00000149476 OTTHUMG00000168076 NM_015533 CCDS8003 Q3LXA3 24569995 MGI:2385084 RGD:1311026 615844 "2.7.1.28|4.6.1.15" +HGNC:11834 TKT transketolase protein-coding gene gene with protein product Approved 3p21.1 03p21.1 Wernicke-Korsakoff syndrome 1992-06-10 2008-07-31 2016-10-05 7086 ENSG00000163931 OTTHUMG00000158192 uc003dgq.5 NM_001064 "CCDS2871|CCDS58834" P29401 1567394 MGI:105992 RGD:621036 TKT 606781 2.2.1.1 +HGNC:11835 TKTL1 transketolase like 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "TKR|TKT2" 1998-09-25 2016-06-03 2016-06-03 8277 ENSG00000007350 OTTHUMG00000022707 uc004fkg.4 X91817 NM_012253 "CCDS35448|CCDS55541" P51854 8838793 MGI:1933244 RGD:1593490 TKTL1 300044 +HGNC:25313 TKTL2 transketolase like 2 protein-coding gene gene with protein product Approved 4q32.2 04q32.2 "FLJ32975|DKFZP434L1717" similar to transketolase 2005-04-08 2016-06-03 2016-06-03 84076 ENSG00000151005 OTTHUMG00000161527 uc003iqp.5 BC028707 NM_032136 CCDS3805 Q9H0I9 11230166 MGI:1921669 RGD:1304767 TKTL2 +HGNC:25177 TLCD1 TLC domain containing 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 calfacilitin 2005-12-20 2015-11-26 116238 ENSG00000160606 OTTHUMG00000132683 uc002hco.4 BC014072 NM_138463 "CCDS11242|CCDS54102" Q96CP7 "12151215|23673622" MGI:1915572 RGD:1359195 TLCD1 +HGNC:33522 TLCD2 TLC domain containing 2 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 2008-03-14 2014-11-19 727910 ENSG00000185561 OTTHUMG00000132477 uc021tnh.2 NM_001164407 CCDS45567 A6NGC4 16793762 MGI:1917141 RGD:1562631 TLCD2 +HGNC:29325 TLDC1 TBC/LysM-associated domain containing 1 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 TLD domain containing 1 KIAA1609 KIAA1609 2006-04-07 2013-03-14 2013-03-14 2014-11-19 57707 ENSG00000140950 OTTHUMG00000176739 uc059xwo.1 AB046829 NM_020947 CCDS32498 Q6P9B6 10997877 MGI:1921597 RGD:1308461 +HGNC:16112 TLDC2 TBC/LysM-associated domain containing 2 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 dJ132F21.2 "hypothetical protein LOC140711|TLD domain containing 2" C20orf118 chromosome 20 open reading frame 118 2001-07-17 2013-03-14 2013-03-14 2013-03-14 140711 ENSG00000101342 OTTHUMG00000032400 uc002xgg.2 AL079335 NM_080628 CCDS33465 A0PJX2 MGI:2686178 RGD:1561343 +HGNC:11837 TLE1 transducin like enhancer of split 1 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 "ESG1|GRG1|ESG" enhancer of split groucho 1 transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila) WD repeat domain containing 362 1993-12-13 2015-11-23 2015-11-23 7088 ENSG00000196781 OTTHUMG00000021008 uc004aly.4 NM_005077 CCDS6661 Q04724 "8365415|8808280" MGI:104636 RGD:1309237 TLE1 600189 +HGNC:39438 TLE1P1 transducin like enhancer of split 1 pseudogene 1 pseudogene pseudogene Approved Xq12 Xq12 2011-01-04 2015-11-23 2015-11-23 645381 ENSG00000228158 OTTHUMG00000021718 NG_022665 PGOHUM00000241815 +HGNC:11838 TLE2 transducin like enhancer of split 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "ESG2|GRG2|ESG|FLJ41188" enhancer of split groucho 2 transducin-like enhancer of split 2 (E(sp1) homolog, Drosophila) WD repeat domain containing 362 1993-12-20 2015-11-23 2015-11-23 7089 ENSG00000065717 OTTHUMG00000180613 uc002lww.3 M99436 NM_003260 "CCDS45911|CCDS45912|CCDS45913|CCDS74255" Q04725 8808280 MGI:104635 RGD:1306665 TLE2 601041 +HGNC:11839 TLE3 transducin like enhancer of split 3 protein-coding gene gene with protein product Approved 15q22 15q22 "ESG|ESG3|KIAA1547|HsT18976|GRG3" transducin-like enhancer of split 3 (E(sp1) homolog, Drosophila) WD repeat domain containing 362 1993-12-13 2015-11-23 2015-11-23 7090 ENSG00000140332 OTTHUMG00000172121 uc002asm.4 M99438 NM_005078 "CCDS45293|CCDS45294|CCDS58375|CCDS61689|CCDS61691|CCDS61692|CCDS73747" Q04726 8365415 MGI:104634 RGD:620292 TLE3 600190 +HGNC:11840 TLE4 transducin like enhancer of split 4 protein-coding gene gene with protein product Approved 9q21.31 09q21.31 "E(spI)|ESG|GRG4" transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila) WD repeat domain containing 362 1993-12-20 2015-11-23 2016-10-05 7091 ENSG00000106829 OTTHUMG00000020072 uc004alc.5 M99439 XM_212237 "CCDS43837|CCDS65069|CCDS65070|CCDS75851" Q04727 8365415 MGI:104633 RGD:3868 TLE4 605132 +HGNC:30788 TLE6 transducin like enhancer of split 6 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "FLJ14009|GRG6" transducin-like enhancer of split 6 (E(sp1) homolog, Drosophila) WD repeat domain containing 362 2005-01-11 2015-11-23 2015-11-23 79816 ENSG00000104953 OTTHUMG00000156793 uc002lwu.3 AK024071 NM_024760 "CCDS12100|CCDS45910" Q9H808 11486032 MGI:2149593 RGD:1561530 TLE6 612399 +HGNC:11841 TLK1 tousled like kinase 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "KIAA0137|PKU-BETA" tousled-like kinase 1 2000-01-07 2015-11-19 2015-11-19 9874 ENSG00000198586 OTTHUMG00000132243 uc002ugn.3 AB004885 NM_012290 "CCDS2241|CCDS46447|CCDS46448" Q9UKI8 "9427565|12660173" MGI:2441683 RGD:1310370 TLK1 608438 objectId:2242 +HGNC:28608 TLK1P1 tousled like kinase 1 pseudogene 1 pseudogene pseudogene Approved 9q33.2 09q33.2 TLK1ps TLK1P "tousled-like kinase 1 pseudogene|tousled-like kinase 1 pseudogene 1" 2005-05-06 2010-04-19 2015-11-19 2016-10-05 100129793 ENSG00000226783 OTTHUMG00000020623 NG_021465 PGOHUM00000236766 +HGNC:11842 TLK2 tousled like kinase 2 protein-coding gene gene with protein product Approved 17q23 17q23 "PKU-ALPHA|MGC44450" tousled-like kinase 2 2000-01-07 2015-11-19 2016-08-09 11011 ENSG00000146872 OTTHUMG00000179176 uc002izz.5 AB004884 NM_006852 "CCDS11633|CCDS45753|CCDS62283|CCDS82182" Q86UE8 "9427565|10523312" MGI:1346023 RGD:1310907 TLK2 608439 objectId:2243 2.7.11.1 +HGNC:18048 TLK2P1 tousled like kinase 2 pseudogene 1 pseudogene pseudogene Approved 17q11.1-q23.2 17q11.1-q23.2 TLK2ps1 tousled-like kinase 2 pseudogene 1 2005-05-06 2015-11-19 2015-11-19 646202 ENSG00000226049 OTTHUMG00000166422 NG_006102 +HGNC:22227 TLK2P2 tousled like kinase 2 pseudogene 2 pseudogene pseudogene Approved 10p11.21 10p11.21 TLK2ps2 tousled-like kinase 2 pseudogene 2 2005-05-06 2015-11-19 2016-08-16 553121 ENSG00000228828 OTTHUMG00000017977 NG_006100 PGOHUM00000289798 +HGNC:11843 TLL1 tolloid like 1 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 Astacins 894 1997-10-16 2015-11-13 2015-11-13 7092 ENSG00000038295 OTTHUMG00000161112 uc003irh.3 AF282732 XM_017008570 "CCDS3811|CCDS56342" O43897 10516436 MGI:106923 RGD:1306120 TLL1 606742 237464 M12.016 +HGNC:11844 TLL2 tolloid like 2 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 Astacins 894 1997-10-16 2015-11-13 2015-11-13 7093 ENSG00000095587 OTTHUMG00000018833 uc001kml.3 AF059516 NM_012465 CCDS7449 Q9Y6L7 10516436 MGI:1346044 RGD:1559756 TLL2 606743 M12.018 +HGNC:11845 TLN1 talin 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 ILWEQ TLN FERM domain containing 1293 1996-10-31 2016-10-05 7094 ENSG00000137076 OTTHUMG00000019874 uc003zxt.3 AB028950 NM_006289 CCDS35009 Q9Y490 "7635475|10610730" MGI:1099832 RGD:1306247 TLN1 186745 +HGNC:15447 TLN2 talin 2 protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "KIAA0320|ILWEQ" FERM domain containing 1293 2001-04-25 2015-09-08 83660 ENSG00000171914 OTTHUMG00000133679 uc002alb.5 AB002318 XM_006720717 CCDS32261 Q9Y4G6 "9205841|11527381" MGI:1917799 RGD:1565416 TLN2 607349 +HGNC:11847 TLR1 toll like receptor 1 protein-coding gene gene with protein product Approved 4p14 04p14 "rsc786|KIAA0012|CD281" toll-like receptor 1 "CD molecules|Toll like receptors" "471|948" 1998-06-25 2016-01-21 2016-01-21 7096 ENSG00000174125 OTTHUMG00000160413 uc003gtl.4 U88540 XM_005262662 CCDS33973 Q15399 "9435236|7584026" MGI:1341295 RGD:1309975 TLR1 601194 objectId:1751 CD281 +HGNC:11848 TLR2 toll like receptor 2 protein-coding gene gene with protein product Approved 4q32 04q32 "TIL4|CD282" toll-like receptor 2 "CD molecules|Toll like receptors" "471|948" 1998-06-25 2016-01-21 2016-01-21 7097 ENSG00000137462 OTTHUMG00000161525 uc063aif.1 U88878 XM_017008573 CCDS3784 O60603 9435236 MGI:1346060 RGD:735138 TLR2 603028 objectId:1752 CD282 +HGNC:11849 TLR3 toll like receptor 3 protein-coding gene gene with protein product Approved 4q35 04q35 CD283 toll-like receptor 3 "CD molecules|Toll like receptors" "471|948" 1998-06-25 2016-01-21 2016-10-12 7098 ENSG00000164342 OTTHUMG00000160345 uc003iyq.4 U88879 XM_017008577 CCDS3846 O15455 9435236 MGI:2156367 RGD:735171 "TLR3base: Mutation registry for Influenza-associated encephalopathy|http://structure.bmc.lu.se/idbase/TLR3base/|LRG_117|http://www.lrg-sequence.org/LRG/LRG_117" TLR3 603029 167875 objectId:1753 CD283 +HGNC:11850 TLR4 toll like receptor 4 protein-coding gene gene with protein product Approved 9q33.1 09q33.1 "hToll|CD284|TLR-4|ARMD10" toll-like receptor 4 "CD molecules|Toll like receptors" "471|948" 1998-06-25 2016-01-21 2016-01-21 7099 ENSG00000136869 OTTHUMG00000021046 uc004bjz.5 U88880 NM_138554 CCDS6818 O00206 "9435236|9237759" MGI:96824 RGD:3870 TLR4 603030 353890 objectId:1754 CD284 +HGNC:11851 TLR5 toll like receptor 5 protein-coding gene gene with protein product Approved 1q41 01q41 "TIL3|FLJ10052|MGC126430|MGC126431" Toll/interleukin-1 receptor-like protein 3 SLEB1 "systemic lupus erythematosus susceptibility 1|toll-like receptor 5" Toll like receptors 948 1998-06-25 2016-01-21 2016-10-05 7100 ENSG00000187554 OTTHUMG00000037937 uc001hnw.3 NM_003268 CCDS31033 O60602 "9435236|16027372" MGI:1858171 RGD:631351 TLR5 603031 objectId:1755 +HGNC:16711 TLR6 toll like receptor 6 protein-coding gene gene with protein product Approved 4p14 04p14 CD286 toll-like receptor 6 "CD molecules|Toll like receptors" "471|948" 2001-10-01 2016-01-21 2016-10-05 10333 ENSG00000174130 OTTHUMG00000128579 uc010ifg.3 XM_011513612 CCDS3446 Q9Y2C9 10231569 MGI:1341296 RGD:1303030 TLR6 605403 objectId:1756 CD286 +HGNC:15631 TLR7 toll like receptor 7 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 toll-like receptor 7 Toll like receptors 948 2001-04-27 2016-01-21 2016-10-05 51284 ENSG00000196664 OTTHUMG00000021137 uc004cvc.4 AF240467 NM_016562 CCDS14151 Q9NYK1 11022119 MGI:2176882 RGD:1563357 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TLR7 TLR7 300365 objectId:1757 +HGNC:15632 TLR8 toll like receptor 8 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 CD288 toll-like receptor 8 "CD molecules|Toll like receptors" "471|948" 2001-04-27 2016-01-21 2016-10-05 51311 ENSG00000101916 OTTHUMG00000021145 uc004cvd.4 AF246971 NM_016610 "CCDS14152|CCDS14153" Q9NR97 11022119 MGI:2176887 RGD:1590327 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TLR8 TLR8 300366 objectId:1758 CD288 +HGNC:40720 TLR8-AS1 TLR8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.2 Xp22.2 TLR8 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 349408 ENSG00000233338 OTTHUMG00000021142 uc064xzx.1 NR_030727 +HGNC:15633 TLR9 toll like receptor 9 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 CD289 toll-like receptor 9 "CD molecules|Toll like receptors" "471|948" 2001-04-27 2016-01-21 2016-10-05 54106 ENSG00000239732 OTTHUMG00000158106 uc003dda.2 AF259262 NM_017442 CCDS2848 Q9NR96 11022119 MGI:1932389 RGD:631352 TLR9 605474 objectId:1759 CD289 +HGNC:15634 TLR10 toll like receptor 10 protein-coding gene gene with protein product Approved 4p14 04p14 CD290 toll-like receptor 10 "CD molecules|Toll like receptors" "471|948" 2001-04-27 2016-01-21 2016-01-21 81793 ENSG00000174123 OTTHUMG00000128578 uc021xnl.1 AF296673 XM_011513760 CCDS3445 Q9BXR5 11267672 RGD:1311569 TLR10 606270 objectId:1760 CD290 +HGNC:31754 TLR12P toll like receptor 12, pseudogene pseudogene pseudogene Approved 1p35.1 01p35.1 toll-like receptor 12, pseudogene 2010-03-12 2016-01-21 2016-01-21 100131451 ENSG00000234512 OTTHUMG00000154094 NG_016733 14993594 MGI:3045221 +HGNC:5056 TLX1 T-cell leukemia homeobox 1 protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "Homeo box-11 (T-cell leukemia-3 associated breakpoint, homologous to Drosophila Notch)|homeo box 11 (T-cell lymphoma 3-associated breakpoint)" "TCL3|HOX11" "homeo box 11 (T-cell lymphoma 3-associated breakpoint)|T-cell leukemia, homeobox 1" NKL subclass homeoboxes and pseudogenes 519 1991-03-18 2002-05-31 2005-12-22 2016-10-05 3195 ENSG00000107807 OTTHUMG00000019341 uc001ksw.4 M62626 NM_005521 "CCDS7510|CCDS55725" P31314 "1676542|1973146" MGI:98769 RGD:1563655 TLX1 186770 8520 330912 +HGNC:37183 TLX1NB TLX1 neighbor non-coding RNA RNA, long non-coding Approved 10q24.31 10q24.31 "TD1|TDI|APT-B7" 2009-08-14 2016-10-05 100038246 ENSG00000236311 OTTHUMG00000018925 uc001ksv.5 BC019674 NM_001085398 P0CAT3 17303350 612734 +HGNC:5057 TLX2 T-cell leukemia homeobox 2 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "Enx|Tlx2|NCX" HOX11L1 "homeo box 11-like 1|T-cell leukemia, homeobox 2" NKL subclass homeoboxes and pseudogenes 519 1998-08-04 2002-05-31 2005-12-22 2014-11-18 3196 ENSG00000115297 OTTHUMG00000129960 uc002smb.3 AJ002607 NM_016170 CCDS1947 O43763 10343123 MGI:1350935 RGD:1595506 TLX2 604240 8521 +HGNC:13532 TLX3 T-cell leukemia homeobox 3 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 RNX HOX11L2 "homeo box 11-like 2|T-cell leukemia, homeobox 3" NKL subclass homeoboxes and pseudogenes 519 2001-12-17 2002-05-31 2005-12-22 2014-11-19 30012 ENSG00000164438 OTTHUMG00000163207 uc003mbf.3 AJ223798 NM_021025 CCDS34288 O43711 "11435718|11435716" MGI:1351209 RGD:1564190 TLX3 604640 8522 330918 +HGNC:24142 TM2D1 TM2 domain containing 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 BBP 2005-05-19 2016-10-05 83941 ENSG00000162604 OTTHUMG00000008466 uc057hca.1 AF353990 NM_032027 CCDS65554 Q9BX74 "11278849|12553667" MGI:2137022 RGD:1305442 TM2D1 610080 +HGNC:24127 TM2D2 TM2 domain containing 2 protein-coding gene gene with protein product Approved 8p11.23 08p11.23 BLP1 2005-05-19 2005-08-09 83877 ENSG00000169490 OTTHUMG00000164098 uc003xmk.4 AF353991 NM_031940 "CCDS6111|CCDS43733" Q9BX73 11278849 MGI:1916992 RGD:1306769 TM2D2 610081 +HGNC:24128 TM2D3 TM2 domain containing 3 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "BLP2|FLJ22604" 2005-05-19 2014-11-19 80213 ENSG00000184277 OTTHUMG00000149872 uc002bxi.4 AK094955 NM_078474 "CCDS10392|CCDS10393|CCDS76795|CCDS76796" Q9BRN9 11278849 MGI:1915884 RGD:1564929 TM2D3 610014 +HGNC:11853 TM4SF1 transmembrane 4 L six family member 1 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 L6 M3S1 transmembrane 4 superfamily member 1 1993-12-08 2005-03-21 2016-10-05 4071 ENSG00000169908 OTTHUMG00000159597 uc003exb.2 M90657 XM_017006385 CCDS3143 P30408 1565644 MGI:104678 RGD:1309652 TM4SF1 191155 +HGNC:40587 TM4SF1-AS1 TM4SF1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 TM4SF1 antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874091 ENSG00000240541 OTTHUMG00000159596 uc032sfs.2 NR_109809 +HGNC:11856 TM4SF4 transmembrane 4 L six family member 4 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 il-TMP transmembrane 4 superfamily member 4 1997-10-16 2005-03-21 2016-10-05 7104 ENSG00000169903 OTTHUMG00000159619 uc003exd.3 NM_004617 CCDS46932 P48230 7665614 MGI:2385173 RGD:621784 TM4SF4 606567 +HGNC:11857 TM4SF5 transmembrane 4 L six family member 5 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 transmembrane 4 superfamily member 5 1999-01-21 2005-03-21 2016-10-05 9032 ENSG00000142484 OTTHUMG00000090776 uc002fyw.1 AF027204 NM_003963 CCDS11054 O14894 "9479038|26404468" MGI:1922854 RGD:1308709 TM4SF5 604657 +HGNC:25181 TM4SF18 transmembrane 4 L six family member 18 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 L6D 2005-03-21 2014-11-19 116441 ENSG00000163762 OTTHUMG00000159582 uc003exa.3 BC014339 NM_138786 CCDS3142 Q96CE8 10975581 TM4SF18 +HGNC:25167 TM4SF19 transmembrane 4 L six family member 19 protein-coding gene gene with protein product Approved 3q29 03q29 2005-03-21 2015-08-26 116211 ENSG00000145107 OTTHUMG00000155675 uc003fwl.3 BC013113 NM_138461 "CCDS3316|CCDS56299" Q96DZ7 12477932 MGI:3645933 RGD:1560486 TM4SF19 +HGNC:41085 TM4SF19-AS1 TM4SF19 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 TM4SF19 antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874214 ENSG00000235897 OTTHUMG00000155669 uc003fwk.2 NR_121665 +HGNC:49190 TM4SF19-TCTEX1D2 TM4SF19-TCTEX1D2 readthrough (NMD candidate) other readthrough Approved 3q29 03q29 2013-09-25 2013-09-25 100534611 ENSG00000273331 OTTHUMG00000186464 NR_037950 +HGNC:26230 TM4SF20 transmembrane 4 L six family member 20 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 "FLJ22800|TCCE518" 2005-03-21 2014-11-19 79853 ENSG00000168955 OTTHUMG00000133187 uc002vpb.3 AK026453 NM_024795 CCDS2466 Q53R12 12975309 MGI:1913511 RGD:1588633 TM4SF20 615404 +HGNC:11860 TM6SF1 transmembrane 6 superfamily member 1 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 2000-05-02 2016-10-05 53346 ENSG00000136404 OTTHUMG00000147365 uc002bjp.4 AF255922 NM_023003 "CCDS10323|CCDS45338|CCDS81915" Q9BZW5 11124529 MGI:1933209 RGD:1307978 TM6SF1 606562 +HGNC:11861 TM6SF2 transmembrane 6 superfamily member 2 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 Lpr4 2000-05-02 2016-01-15 53345 ENSG00000213996 OTTHUMG00000182222 uc002nmd.2 AF255923 NM_203510 CCDS42528 Q9BZW4 11124529 MGI:1933210 RGD:1597457 TM6SF2 606563 +HGNC:11863 TM7SF2 transmembrane 7 superfamily member 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "ANG1|DHCR14A|NET47" delta(14)-sterol reductase 1997-11-05 2014-11-18 7108 ENSG00000149809 OTTHUMG00000165603 uc001oct.5 BC012857 NM_003273 "CCDS41669|CCDS60846" O76062 "9615229|9286704" MGI:1920416 RGD:1311205 TM7SF2 603414 1.3.1.70 +HGNC:23049 TM7SF3 transmembrane 7 superfamily member 3 protein-coding gene gene with protein product Approved 12p11.23 12p11.23 2003-08-27 2016-10-05 51768 ENSG00000064115 OTTHUMG00000169243 uc010sjl.4 AB032470 NM_016551 CCDS8710 Q9NS93 10828615 MGI:1914873 RGD:1306752 TM7SF3 605181 +HGNC:11864 TM9SF1 transmembrane 9 superfamily member 1 protein-coding gene gene with protein product Approved 14q12 14q12 "MP70|HMP70" Transmembrane 9 superfamily members 1239 1999-12-09 2016-10-05 10548 ENSG00000100926 OTTHUMG00000029322 uc001wnb.3 U94831 NM_006405 "CCDS9617|CCDS41934|CCDS73623" O15321 9332367 MGI:1921390 RGD:1307085 TM9SF1 +HGNC:11865 TM9SF2 transmembrane 9 superfamily member 2 protein-coding gene gene with protein product Approved 13q32.3 13q32.3 P76 Transmembrane 9 superfamily members 1239 1999-12-15 2016-10-05 9375 ENSG00000125304 OTTHUMG00000017272 uc001voj.3 U81006 NM_004800 CCDS9493 Q99805 9729438 MGI:1915309 RGD:1359230 TM9SF2 604678 +HGNC:21529 TM9SF3 transmembrane 9 superfamily member 3 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 SMBP Transmembrane 9 superfamily members 1239 2006-03-22 2016-10-05 56889 ENSG00000077147 OTTHUMG00000018834 uc001kmm.5 "AF160213|AF269150" NM_020123 CCDS7450 Q9HD45 11595169 MGI:1914262 RGD:1564625 TM9SF3 616872 +HGNC:30797 TM9SF4 transmembrane 9 superfamily member 4 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "KIAA0255|dJ836N17.2" Transmembrane 9 superfamily members 1239 2004-04-19 2016-03-24 2016-04-12 9777 ENSG00000101337 OTTHUMG00000032206 uc002wxj.2 BC021107 NM_014742 CCDS13196 Q92544 "9039502|25999474|25659576" MGI:2139220 RGD:1307768 TM9SF4 +HGNC:26932 TMA7 translation machinery associated 7 homolog protein-coding gene gene with protein product Approved 3p21.31 03p21.31 HSPC016 CCDC72 "coiled-coil domain containing 72|translation machinery associated 7 homolog (S. cerevisiae)" 2006-02-10 2012-06-07 2015-09-25 2015-09-25 51372 ENSG00000232112 OTTHUMG00000156588 uc003cte.2 AF077202 NM_015933 CCDS46823 Q9Y2S6 "11042152|15740594" MGI:1913417 RGD:1584795 TMA7 615808 +HGNC:25638 TMA16 translation machinery associated 16 homolog protein-coding gene gene with protein product Approved 4q32.2 04q32.2 FLJ11184 C4orf43 "chromosome 4 open reading frame 43|translation machinery associated 16 homolog (S. cerevisiae)" 2008-06-19 2012-03-02 2015-09-25 2016-10-05 55319 ENSG00000198498 OTTHUMG00000161528 uc003iqq.5 NM_018352 CCDS43278 Q96EY4 12477932 MGI:1913532 RGD:1305222 +HGNC:43780 TMA16P1 translation machinery associated 16 homolog pseudogene 1 pseudogene pseudogene Approved 11q12.1 11q12.1 2012-03-02 2012-03-02 100101405 ENSG00000255265 OTTHUMG00000167431 NG_006426 PGOHUM00000242305 +HGNC:43781 TMA16P2 translation machinery associated 16 homolog pseudogene 2 pseudogene pseudogene Approved 1p34.1 01p34.1 2012-03-02 2012-03-02 100101407 ENSG00000232467 OTTHUMG00000008005 NG_006427 PGOHUM00000244004 +HGNC:23410 TMBIM1 transmembrane BAX inhibitor motif containing 1 protein-coding gene gene with protein product Approved 2q35 02q35 "PP1201|RECS1|LFG3" Transmembrane BAX inhibitor motif containing 1215 2005-08-22 2014-11-19 64114 ENSG00000135926 OTTHUMG00000133105 uc002vhp.2 BN000408 NM_022152 CCDS2412 Q969X1 12477932 MGI:1916910 RGD:1359409 TMBIM1 610364 +HGNC:24257 TMBIM4 transmembrane BAX inhibitor motif containing 4 protein-coding gene gene with protein product Approved 12q14.3 12q14.3 "CGI-119|S1R|ZPRO|LFG4|GAAP" Transmembrane BAX inhibitor motif containing 1215 2005-08-22 2014-11-19 51643 ENSG00000155957 OTTHUMG00000168973 uc001stc.5 AF113127 NM_016056 "CCDS41805|CCDS61187|CCDS81710" Q9HC24 "11042152|10810093" MGI:1915462 RGD:735173 TMBIM4 616874 +HGNC:11723 TMBIM6 transmembrane BAX inhibitor motif containing 6 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "BI-1|BAXI1" BAX inhibitor 1 TEGT testis enhanced gene transcript Transmembrane BAX inhibitor motif containing 1215 1994-08-30 2008-09-17 2008-09-17 2014-11-18 7009 ENSG00000139644 OTTHUMG00000169652 uc001rux.3 X75861 NM_003217 "CCDS31797|CCDS44875" P55061 "8530040|9660918" MGI:99682 RGD:3842 TMBIM6 600748 +HGNC:49212 TMBIM7P transmembrane BAX inhibitor motif containing 7, pseudogene pseudogene pseudogene Approved 7q21.2 07q21.2 Transmembrane BAX inhibitor motif containing 1215 2013-10-09 2013-12-12 ENSG00000230927 OTTHUMG00000155903 MGI:1922305 +HGNC:16513 TMC1 transmembrane channel like 1 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "DFNA36|DFNB7|DFNB11" transmembrane, cochlear expressed, 1 Transmembrane channel likes 1135 2001-10-08 2015-11-12 2016-10-05 117531 ENSG00000165091 OTTHUMG00000020014 uc004aiz.1 AF417578 XM_017014256 CCDS6643 Q8TDI8 "11850618|11850623" MGI:2151016 RGD:1308682 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=TMC1" TMC1 606706 120130 +HGNC:16527 TMC2 transmembrane channel like 2 protein-coding gene gene with protein product Approved 20p13 20p13 dJ686C3.3 C20orf145 transmembrane, cochlear expressed, 2 Transmembrane channel likes 1135 2001-10-08 2015-11-12 2015-11-12 117532 ENSG00000149488 OTTHUMG00000031698 uc002wgf.1 AF417580 XR_001754152 CCDS13029 Q8TDI7 "11850618|12906855" MGI:2151017 RGD:1310073 TMC2 606707 +HGNC:22995 TMC3 transmembrane channel like 3 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 Transmembrane channel likes 1135 2003-08-14 2015-11-12 2016-10-05 342125 ENSG00000188869 OTTHUMG00000172314 uc059mlt.1 AY263163 NM_181841 CCDS45324 Q7Z5M5 "12906855|12812529" MGI:2669033 RGD:1308063 TMC3 +HGNC:51424 TMC3-AS1 TMC3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q25.1 15q25.1 2014-11-21 2014-11-21 101929655 ENSG00000259343 OTTHUMG00000172313 "HY112626|CB134362" NR_120365 +HGNC:22998 TMC4 transmembrane channel like 4 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 Transmembrane channel likes 1135 2003-08-14 2015-11-12 2015-11-12 147798 ENSG00000167608 OTTHUMG00000066485 uc032icl.2 AY236492 XR_935741 "CCDS12882|CCDS46174" Q7Z404 "12812529|12906855" MGI:2669035 RGD:1304811 TMC4 +HGNC:22999 TMC5 transmembrane channel like 5 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 FLJ13593 Transmembrane channel likes 1135 2003-08-14 2015-11-12 2016-10-05 79838 ENSG00000103534 OTTHUMG00000131458 uc002dge.5 AY263164 NM_024780 "CCDS10577|CCDS42126|CCDS45431|CCDS76837" Q6UXY8 "12812529|12906855" MGI:1921674 RGD:1307037 TMC5 +HGNC:18021 TMC6 transmembrane channel like 6 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "LAK-4P|EVIN1" EVER1 epidermodysplasia verruciformis 1 Transmembrane channel likes 1135 2003-02-17 2005-11-10 2015-11-12 2016-10-12 11322 ENSG00000141524 OTTHUMG00000177466 uc002jul.2 AY057379 NM_001321185 CCDS32748 Q7Z403 12426567 MGI:1098686 RGD:1591146 "TMC6base: Mutation registry for Epidermodysplasia verruciformis (previously known as EVER1base)|http://structure.bmc.lu.se/idbase/TMC6base/|LRG_118|http://www.lrg-sequence.org/LRG/LRG_118" TMC6 605828 159303 +HGNC:23000 TMC7 transmembrane channel like 7 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 FLJ21240 Transmembrane channel likes 1135 2003-08-14 2015-11-12 2016-10-05 79905 ENSG00000170537 OTTHUMG00000131456 uc002dfq.4 AY263165 NM_024847 "CCDS10573|CCDS53992|CCDS73837" Q7Z402 "12812529|12906855" MGI:2443317 RGD:1564267 TMC7 +HGNC:20474 TMC8 transmembrane channel like 8 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 EVIN2 EVER2 epidermodysplasia verruciformis 2 Transmembrane channel likes 1135 2003-02-17 2005-11-10 2015-11-12 2016-10-12 147138 ENSG00000167895 OTTHUMG00000177436 uc002jup.3 AY057380 XM_011524402 CCDS32749 Q8IU68 12426567 MGI:2669037 RGD:1591150 "TMC8base: Mutation registry for Epidermodysplasia verruciformis (previously known as EVER2base)|http://structure.bmc.lu.se/idbase/TMC8base/|LRG_119|http://www.lrg-sequence.org/LRG/LRG_119" TMC8 605829 159387 +HGNC:29116 TMCC1 transmembrane and coiled-coil domain family 1 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 KIAA0779 transmembrane and coiled-coil domains 1 Transmembrane and coiled-coil domain containing 774 2005-01-21 2005-07-13 2016-10-05 23023 ENSG00000172765 OTTHUMG00000159579 uc021xdy.2 AB018322 NM_015008 CCDS33855 O94876 9872452 MGI:2442368 RGD:1311909 TMCC1 616242 +HGNC:49060 TMCC1-AS1 TMCC1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3q22.1 03q22.1 2013-08-20 2013-08-20 100507032 ENSG00000271270 OTTHUMG00000185164 NR_037893 +HGNC:31901 TMCC1P1 transmembrane and coiled-coil domain family 1 pseudogene 1 pseudogene pseudogene Approved 8q23.1 08q23.1 TMCC1P "transmembrane and coiled-coil domains 1 pseudogene|transmembrane and coiled-coil domain family 1 pseudogene" 2005-01-21 2010-04-19 2010-04-19 2014-11-18 100128132 ENSG00000253318 OTTHUMG00000164817 NG_016605 PGOHUM00000249471 +HGNC:24239 TMCC2 transmembrane and coiled-coil domain family 2 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "HUCEP11|FLJ38497" transmembrane and coiled-coil domains 2 Transmembrane and coiled-coil domain containing 774 2005-01-21 2005-07-13 2014-11-19 9911 ENSG00000133069 OTTHUMG00000037195 uc021pia.2 AB001596 NM_014858 "CCDS30984|CCDS55676|CCDS73010|CCDS76257|CCDS81418" O75069 9455484 MGI:1916125 RGD:1311960 TMCC2 +HGNC:29199 TMCC3 transmembrane and coiled-coil domain family 3 protein-coding gene gene with protein product Approved 12q22 12q22 KIAA1145 transmembrane and coiled-coil domains 3 Transmembrane and coiled-coil domain containing 774 2005-01-21 2005-07-13 2014-11-19 57458 ENSG00000057704 OTTHUMG00000170225 uc001tdj.3 AB032971 NM_020698 "CCDS31877|CCDS73506" Q9ULS5 10574461 MGI:2442900 RGD:1307241 TMCC3 +HGNC:18188 TMCO1 transmembrane and coiled-coil domains 1 protein-coding gene gene with protein product Approved 1q24.1 01q24.1 HP10122 TMCC4 transmembrane and coiled-coil domains 4 2005-05-19 2005-07-13 2005-07-13 2016-04-25 54499 ENSG00000143183 OTTHUMG00000034672 uc057mzb.1 AB020980 NM_019026 CCDS1251 Q9UM00 "8619474|9110174" MGI:1921173 RGD:1359178 TMCO1 614123 232228 +HGNC:23312 TMCO2 transmembrane and coiled-coil domains 2 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 dJ39G22.2 2005-07-13 2015-08-26 127391 ENSG00000188800 OTTHUMG00000005764 uc001cfe.3 AL050341 NM_001008740 CCDS30684 Q7Z6W1 MGI:1916719 RGD:2321463 TMCO2 +HGNC:20329 TMCO3 transmembrane and coiled-coil domains 3 protein-coding gene gene with protein product Approved 13q34 13q34 FLJ20623 C13orf11 chromosome 13 open reading frame 11 2003-01-29 2005-07-22 2005-07-22 2015-11-12 55002 ENSG00000150403 OTTHUMG00000017389 uc001vtu.5 BC012564 NM_017905 CCDS9537 Q6UWJ1 MGI:2444946 RGD:1306586 TMCO3 617134 +HGNC:27393 TMCO4 transmembrane and coiled-coil domains 4 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 DKFZp686C23231 2005-08-09 2014-11-19 255104 ENSG00000162542 OTTHUMG00000002697 uc001bcn.3 NM_181719 CCDS198 Q5TGY1 MGI:1924306 RGD:1566357 TMCO4 +HGNC:28558 TMCO5A transmembrane and coiled-coil domains 5A protein-coding gene gene with protein product Approved 15q14 15q14 MGC35118 TMCO5 transmembrane and coiled-coil domains 5 2005-10-25 2008-06-10 2008-06-10 2014-11-19 145942 ENSG00000166069 OTTHUMG00000129787 uc001zjw.4 BC029221 NM_152453 "CCDS10046|CCDS81862" Q8N6Q1 12477932 MGI:1914606 RGD:1565206 TMCO5A +HGNC:34243 TMCO5B transmembrane and coiled-coil domains 5B (pseudogene) pseudogene pseudogene Approved 15q13.3 15q13.3 transmembrane and coiled-coil domains 5B 2008-06-10 2016-01-06 2016-07-19 100652857 ENSG00000215296 OTTHUMG00000167569 NR_046005 A8MYB1 RGD:1561237 +HGNC:28814 TMCO6 transmembrane and coiled-coil domains 6 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "FLJ39769|PRO1580" 2006-08-21 2014-11-19 55374 ENSG00000113119 OTTHUMG00000129497 uc003lgl.4 BC001910 NM_018502 "CCDS4233|CCDS75320" Q96DC7 12477932 MGI:1919233 RGD:1309263 TMCO6 +HGNC:17291 TMED1 transmembrane p24 trafficking protein 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "ST2L|MGC1270|IL1RL1LG|Il1rl1l|p24gamma1|p24g1" "transmembrane emp24 domain containing 1|transmembrane emp24 protein transport domain containing 1" Transmembrane p24 trafficking proteins 1064 2005-01-07 2015-08-11 2015-08-11 11018 ENSG00000099203 OTTHUMG00000180696 uc002mpy.5 U41804 NM_006858 CCDS12249 Q13445 "11466339|8621446" MGI:106201 RGD:1311679 TMED1 605395 +HGNC:16996 TMED2 transmembrane p24 trafficking protein 2 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "RNP24|P24A|p24beta1|p24b1" transmembrane emp24 domain trafficking protein 2 Transmembrane p24 trafficking proteins 1064 2005-08-26 2015-08-11 2015-08-11 10959 ENSG00000086598 OTTHUMG00000168694 uc001ufg.4 X92098 NM_006815 CCDS9250 Q15363 8663407 MGI:1929269 RGD:69243 TMED2 +HGNC:28889 TMED3 transmembrane p24 trafficking protein 3 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "p24B|p24gamma4|p24g4" C15orf22 "chromosome 15 open reading frame 22|transmembrane emp24 domain containing 3|transmembrane emp24 protein transport domain containing 3" Transmembrane p24 trafficking proteins 1064 2004-06-25 2005-01-07 2015-08-11 2016-10-05 23423 ENSG00000166557 OTTHUMG00000144170 uc002beu.4 BC022232 NM_007364 "CCDS10310|CCDS73768|CCDS81914" Q9Y3Q3 12975309 MGI:1913361 RGD:1303327 TMED3 +HGNC:22301 TMED4 transmembrane p24 trafficking protein 4 protein-coding gene gene with protein product Approved 7p13 07p13 "HNLF|p24alpha3|p24a3" transmembrane emp24 protein transport domain containing 4 Transmembrane p24 trafficking proteins 1064 2004-12-21 2015-08-11 2015-08-11 222068 ENSG00000158604 OTTHUMG00000129210 uc003tli.4 BC035467 NM_182547 "CCDS5493|CCDS78227|CCDS78226" Q7Z7H5 12761501 MGI:1915070 RGD:1306319 TMED4 612038 +HGNC:24251 TMED5 transmembrane p24 trafficking protein 5 protein-coding gene gene with protein product Approved 1p22.1 01p22.1 "CGI-100|p24g2|p24gamma2" transmembrane emp24 protein transport domain containing 5 Transmembrane p24 trafficking proteins 1064 2004-12-21 2015-08-11 2015-08-11 50999 ENSG00000117500 OTTHUMG00000010162 uc001dpn.4 BC070051 NM_016040 "CCDS743|CCDS53342" Q9Y3A6 10810093 MGI:1921586 RGD:1359437 TMED5 616876 +HGNC:28331 TMED6 transmembrane p24 trafficking protein 6 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "MGC23911|p24gamma5|p24g5" transmembrane emp24 protein transport domain containing 6 Transmembrane p24 trafficking proteins 1064 2004-12-21 2015-08-11 2015-08-11 146456 ENSG00000157315 OTTHUMG00000137571 uc002exc.3 BC020827 NM_144676 CCDS10878 Q8WW62 12477932 MGI:1913519 RGD:1305260 TMED6 +HGNC:24253 TMED7 transmembrane p24 trafficking protein 7 protein-coding gene gene with protein product Approved 5q22.3 05q22.3 "CGI-109|FLJ90481|p24gamma3|p24g3" transmembrane emp24 protein transport domain containing 7 Transmembrane p24 trafficking proteins 1064 2004-12-21 2015-08-11 2015-08-11 51014 ENSG00000134970 OTTHUMG00000132013 uc003krf.4 AK074962 NM_181836 CCDS4120 Q9Y3B3 10810093 MGI:1913926 RGD:727954 TMED7 +HGNC:33945 TMED7-TICAM2 TMED7-TICAM2 readthrough other readthrough Approved 5q22.3 05q22.3 2009-11-05 2009-11-05 2014-11-19 100302736 ENSG00000251201 OTTHUMG00000162911 uc003kre.4 NM_001164468 "CCDS54887|CCDS54888" +HGNC:18633 TMED8 transmembrane p24 trafficking protein family member 8 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 FAM15B "family with sequence similarity 15, member B|transmembrane emp24 domain containing 8|transmembrane emp24 protein transport domain containing 8" GOLD domain containing 1062 2003-01-10 2005-01-07 2015-08-11 2015-08-26 283578 ENSG00000100580 OTTHUMG00000171552 uc001xto.2 AK095650 NM_213601 CCDS32125 Q6PL24 MGI:1923480 RGD:1589336 TMED8 +HGNC:24878 TMED9 transmembrane p24 trafficking protein 9 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "HSGP25L2G|p24alpha2|p24a2" transmembrane emp24 protein transport domain containing 9 Transmembrane p24 trafficking proteins 1064 2004-12-21 2015-08-11 2015-08-11 54732 ENSG00000184840 OTTHUMG00000130859 uc003mhx.4 AF441399 NM_017510 CCDS4428 Q9BVK6 12477932 MGI:1914761 RGD:1307627 TMED9 +HGNC:16998 TMED10 transmembrane p24 trafficking protein 10 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "TMP21|P24(DELTA)|p24d1|p24delta1|p23" transmembrane emp24-like trafficking protein 10 (yeast) Transmembrane p24 trafficking proteins 1064 2005-08-26 2015-08-11 2015-08-11 10972 ENSG00000170348 OTTHUMG00000171771 uc001xrm.2 "AL832012|X97442" NM_006827 CCDS9840 P49755 "7596406|8663407" MGI:1915831 RGD:620970 TMED10 605406 +HGNC:30754 TMED10P1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudogene pseudogene Approved 8q24.3 08q24.3 Tmp21-II TMED10P "transmembrane emp24-like trafficking protein 10 (yeast) pseudogene|transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 1" 2005-08-26 2010-04-19 2016-01-28 2016-01-28 286102 ENSG00000254618 OTTHUMG00000165203 AJ004914 XR_002807 10376215 PGOHUM00000249817 +HGNC:38105 TMED10P2 transmembrane p24 trafficking protein 10 pseudogene 2 pseudogene pseudogene Approved 3q21.3 03q21.3 transmembrane emp24-like trafficking protein 10 (yeast) pseudogene 2 2010-04-19 2016-01-28 2016-10-05 100129727 ENSG00000239405 OTTHUMG00000159692 NG_023009 PGOHUM00000238175 +HGNC:35401 TMED11P transmembrane p24 trafficking protein 11, pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 "p24alpha1|p24a1" transmembrane emp24 protein transport domain containing 11, pseudogene Transmembrane p24 trafficking proteins 1064 2009-01-06 2015-08-11 2015-08-11 100379220 ENSG00000215367 OTTHUMG00000154635 NR_033768 MGI:1914616 +HGNC:11866 TMEFF1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 "H7365|CT120.1" "tomoregulin-1|cancer/testis antigen family 120, member 1" C9orf2 transmembrane protein with EGF-like and two follistatin-like domains 1 1998-08-06 2016-01-21 2016-10-05 8577 ENSG00000241697 OTTHUMG00000020367 uc004baz.3 U19878 NM_003692 CCDS6750 Q8IYR6 9730596 MGI:1926810 RGD:62005 TMEFF1 603421 +HGNC:11867 TMEFF2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding gene gene with protein product Approved 2q32.3 02q32.3 "TENB2|HPP1|TR|TPEF|CT120.2" "transmembrane protein TENB2|tomoregulin|cancer/testis antigen family 120, member 2" transmembrane protein with EGF-like and two follistatin-like domains 2 1998-10-02 2016-01-21 2016-01-21 23671 ENSG00000144339 OTTHUMG00000132723 uc002utc.4 AB017269 NM_016192 "CCDS2314|CCDS82547|CCDS82548" Q9UIK5 10903839 MGI:1861735 RGD:1308839 TMEFF2 605734 +HGNC:11869 TMEM2 transmembrane protein 2 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 1999-03-24 2015-08-26 23670 ENSG00000135048 OTTHUMG00000020000 uc011lsa.1 NM_013390 "CCDS6638|CCDS47979" Q9UHN6 MGI:1890373 RGD:1307941 TMEM2 605835 +HGNC:13530 TMEM5 transmembrane protein 5 protein-coding gene gene with protein product Approved 12q14.2 12q14.2 HP10481 2000-09-20 2016-10-05 10329 ENSG00000118600 OTTHUMG00000168730 uc001srq.3 AB015633 NM_014254 "CCDS8966|CCDS61179" Q9Y2B1 "27130732|23217329" MGI:2384919 RGD:1309356 TMEM5 605862 317635 +HGNC:48910 TMEM5-AS1 TMEM5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q14.2 12q14.2 2013-07-01 2013-07-04 104169670 ENSG00000255850 OTTHUMG00000168731 DB026756 NR_126167 +HGNC:17205 TMEM8A transmembrane protein 8A protein-coding gene gene with protein product Approved 16p13.3 16p13.3 M83 "TMEM6|TMEM8" "transmembrane protein 6|transmembrane protein 8 (five membrane-spanning domains)" 2001-11-30 2009-06-12 2009-06-12 2014-11-19 58986 ENSG00000129925 OTTHUMG00000047996 uc002cgu.5 AB045292 NM_021259 CCDS10407 Q9HCN3 11006113 MGI:1926283 RGD:1311395 TMEM8A +HGNC:21427 TMEM8B transmembrane protein 8B protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "NAG-5|NGX6" nasopharyngeal carcinoma expressed 6 C9orf127 chromosome 9 open reading frame 127 2004-04-16 2009-06-12 2009-06-12 2015-08-26 51754 ENSG00000137103 OTTHUMG00000019885 uc003zym.5 BC043384 NM_016446 "CCDS6595|CCDS43800" A6NDV4 "12918109|8619474" MGI:2441680 RGD:1310012 TMEM8B 616888 +HGNC:33778 TMEM8C transmembrane protein 8C protein-coding gene gene with protein product Approved 9q34.2 09q34.2 TMEM226 "transmembrane protein 226|myomaker" 2009-06-12 2009-06-19 2016-06-27 389827 ENSG00000187616 OTTHUMG00000131685 uc011mdk.2 BX324209 NM_001080483 CCDS35170 A6NI61 MGI:1913389 RGD:1306074 TMEM8C 615345 +HGNC:18823 TMEM9 transmembrane protein 9 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 TMEM9A 2002-07-12 2016-10-05 252839 ENSG00000116857 OTTHUMG00000035831 uc001gwa.5 NM_016456 "CCDS1408|CCDS73001" Q9P0T7 MGI:1913491 RGD:1307922 TMEM9 616877 +HGNC:1168 TMEM9B TMEM9 domain family member B protein-coding gene gene with protein product Approved 11p15.4 11p15.4 C11orf15 "chromosome 11 open reading frame 15|TMEM9 domain family, member B" 2000-07-31 2005-10-06 2015-11-18 2016-10-05 56674 ENSG00000175348 OTTHUMG00000165676 uc001mhe.3 AJ400877 NM_001286095 "CCDS7796|CCDS66021" Q9NQ34 11528127 MGI:1915254 RGD:1310775 TMEM9B +HGNC:19230 TMEM9B-AS1 TMEM9B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 C11orf18 "chromosome 11 open reading frame 18|TMEM9B antisense RNA 1 (non-protein coding)" 2004-11-30 2011-11-25 2012-08-15 2016-10-05 493900 ENSG00000254860 OTTHUMG00000165677 uc031pyy.1 AJ400877 NR_073431 11528127 +HGNC:16823 TMEM11 transmembrane protein 11 protein-coding gene gene with protein product Approved 17p11.1 17p11.1 "PMI|PM1" C17orf35 chromosome 17 open reading frame 35 2003-01-14 2005-09-08 2005-09-08 2014-11-18 8834 ENSG00000178307 OTTHUMG00000178971 uc002gyp.3 BC002819 NM_003876 CCDS11216 P17152 "2110658|21274005" MGI:2144726 RGD:1309817 TMEM11 +HGNC:21076 TMEM14A transmembrane protein 14A protein-coding gene gene with protein product Approved 6p12.2 06p12.2 "PTD011|C6orf73" 2003-06-11 2016-10-05 28978 ENSG00000096092 OTTHUMG00000014856 uc003pax.4 AF239771 NM_014051 CCDS4943 Q9Y6G1 MGI:1922962 RGD:9417885 TMEM14A 616870 +HGNC:21384 TMEM14B transmembrane protein 14B protein-coding gene gene with protein product Approved 6p24.2 06p24.2 MGC1223 2003-06-11 2016-10-05 81853 ENSG00000137210 OTTHUMG00000014246 uc003mzk.5 AL024498 NM_030969 "CCDS4515|CCDS47372|CCDS75395|CCDS75396|CCDS75397" Q9NUH8 RGD:2319087 TMEM14B +HGNC:20952 TMEM14C transmembrane protein 14C protein-coding gene gene with protein product Approved 6p24.2 06p24.2 "HSPC194|bA421M1.6|NET26" C6orf53 chromosome 6 open reading frame 53 2003-04-24 2004-04-21 2004-04-16 2016-10-05 51522 ENSG00000111843 OTTHUMG00000014242 uc021ylj.2 AF151028 NM_016462 CCDS4514 Q9P0S9 "11042152|12958361" MGI:1913404 RGD:621692 TMEM14C 615318 +HGNC:15660 TMEM14DP transmembrane protein 14D, pseudogene pseudogene pseudogene Approved 10q21.3 10q21.3 bA524O24.3 TMEM14D transmembrane protein 14D 2004-05-27 2015-09-24 2015-09-24 2015-09-24 645203 ENSG00000214881 OTTHUMG00000018356 NG_023183 A8MWL7 +HGNC:34386 TMEM14EP transmembrane protein 14E, pseudogene pseudogene pseudogene Approved 3q25.2 03q25.2 TMEM14E transmembrane protein 14E 2008-07-04 2015-09-24 2015-09-24 2016-10-05 645843 ENSG00000221962 OTTHUMG00000159652 NM_001123228 Q6UXP3 +HGNC:26623 TMEM17 transmembrane protein 17 protein-coding gene gene with protein product Approved 2p15 02p15 FLJ34583 2004-01-14 2015-08-26 200728 ENSG00000186889 OTTHUMG00000129455 uc002sbt.3 NM_198276 CCDS1871 Q86X19 12477932 MGI:2144205 RGD:1310566 TMEM17 614950 +HGNC:25257 TMEM18 transmembrane protein 18 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 DKFZp434C1714 2004-02-05 2014-11-19 129787 ENSG00000151353 OTTHUMG00000151381 uc002qwl.4 AL137269 NM_152834 CCDS33141 Q96B42 12477932 MGI:2387176 RGD:1359389 TMEM18 613220 +HGNC:25605 TMEM19 transmembrane protein 19 protein-coding gene gene with protein product Approved 12q15 12q15 FLJ10936 2004-03-04 2015-08-26 55266 ENSG00000139291 OTTHUMG00000169558 uc001sws.4 BC008596 NM_018279 CCDS9002 Q96HH6 12477932 MGI:1914476 RGD:735209 TMEM19 +HGNC:25890 TMEM25 transmembrane protein 25 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 FLJ14399 C2-set domain containing 592 2004-04-14 2014-11-18 84866 ENSG00000149582 OTTHUMG00000166339 uc010rye.3 AK075437 NM_032780 "CCDS8398|CCDS44745|CCDS44746|CCDS44747|CCDS44748|CCDS81630" Q86YD3 "15254712|12975309" MGI:1918937 RGD:1596132 TMEM25 613934 +HGNC:28550 TMEM26 transmembrane protein 26 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "MGC35010|Em:AC068892.1" 2004-04-16 2016-10-05 219623 ENSG00000196932 OTTHUMG00000018293 uc001jlo.3 BC042872 NM_178505 CCDS41530 Q6ZUK4 12477932 MGI:2143537 RGD:1309273 TMEM26 +HGNC:51209 TMEM26-AS1 TMEM26 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q21.2 10q21.2 2014-08-07 2014-08-07 101928781 ENSG00000237233 OTTHUMG00000018294 BC041470 NR_120643 +HGNC:29437 TMEM27 transmembrane protein 27 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 NX17 collectrin 2004-06-02 2016-10-05 57393 ENSG00000147003 OTTHUMG00000021181 uc004cxc.4 AF229179 NM_020665 CCDS14170 Q9HBJ8 11278314 MGI:1926234 RGD:708489 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TMEM27 TMEM27 300631 +HGNC:16667 TMEM30A transmembrane protein 30A protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "FLJ10856|CDC50A" C6orf67 chromosome 6 open reading frame 67 2003-05-09 2004-06-18 2004-06-17 2015-06-03 55754 ENSG00000112697 OTTHUMG00000015050 uc003phw.3 AK001718 NM_018247 "CCDS4983|CCDS47453" Q9NV96 15375526 MGI:106402 RGD:1303315 TMEM30A 611028 +HGNC:27254 TMEM30B transmembrane protein 30B protein-coding gene gene with protein product Approved 14q23.1 14q23.1 CDC50B 2004-06-17 2006-09-20 161291 ENSG00000182107 OTTHUMG00000171426 uc001xfl.4 AK091169 XM_090844 CCDS32093 Q3MIR4 15375526 MGI:2442082 RGD:1308732 TMEM30B 611029 +HGNC:30443 TMEM30CP transmembrane protein 30C, pseudogene pseudogene pseudogene Approved 3q12.1 03q12.1 CDC50C TMEM30C transmembrane protein 30C 2005-01-10 2016-07-19 2016-07-19 2016-07-19 644444 ENSG00000235156 OTTHUMG00000159056 uc062lyr.1 NR_028357 A0ZSE6 15375526 MGI:1918277 RGD:1306090 611030 +HGNC:28601 TMEM31 transmembrane protein 31 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 MGC39655 2004-06-18 2014-11-19 203562 ENSG00000179363 OTTHUMG00000022109 uc004elh.4 BC029575 NM_182541 CCDS35359 Q5JXX7 12477932 TMEM31 +HGNC:25541 TMEM33 transmembrane protein 33 protein-coding gene gene with protein product Approved 4p13 04p13 FLJ10525 2004-07-28 2016-10-05 55161 ENSG00000109133 OTTHUMG00000099381 uc003gwi.3 BC000948 NM_018126 CCDS3464 P57088 25612671 MGI:1915128 RGD:708371 TMEM33 +HGNC:25864 TMEM35A transmembrane protein 35A protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 FLJ14084 TMEM35 transmembrane protein 35 2004-09-06 2016-05-13 2016-05-13 2016-10-05 59353 ENSG00000126950 OTTHUMG00000022016 uc004egw.4 AK024146 NM_021637 CCDS14478 Q53FP2 MGI:1914814 RGD:1303093 +HGNC:40021 TMEM35B transmembrane protein 35B protein-coding gene gene with protein product Approved 1p34.3 01p34.3 ZMYM6NB ZMYM6 neighbor 2011-05-23 2016-05-13 2016-05-13 2016-05-13 100506144 ENSG00000243749 OTTHUMG00000004158 uc001bye.4 NM_001195156 CCDS53296 Q8NCS4 MGI:3758095 RGD:2319741 +HGNC:18216 TMEM37 transmembrane protein 37 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 "PR1|PR" 2004-12-14 2014-11-19 140738 ENSG00000171227 OTTHUMG00000153304 uc002tly.4 AF361356 NM_183240 CCDS33281 Q8WXS4 MGI:2157899 RGD:628689 TMEM37 +HGNC:28462 TMEM38A transmembrane protein 38A protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "MGC3169|TRIC-A" 2004-12-21 2014-11-19 79041 ENSG00000072954 OTTHUMG00000182639 uc002nes.4 AK025981 NM_024074 CCDS12349 Q9H6F2 17611541 MGI:1921416 RGD:1307901 TMEM38A 611235 +HGNC:25535 TMEM38B transmembrane protein 38B protein-coding gene gene with protein product Approved 9q31.2 09q31.2 "FLJ10493|bA219P18.1|D4Ertd89e|TRIC-B" C9orf87 chromosome 9 open reading frame 87 2004-02-19 2004-12-22 2004-12-21 2016-10-05 55151 ENSG00000095209 OTTHUMG00000020429 uc004bcu.3 BC031938 NM_018112 CCDS6768 Q9NVV0 "17611541|23316006" MGI:1098718 RGD:1305703 TMEM38B 611236 330772 +HGNC:25600 TMEM39A transmembrane protein 39A protein-coding gene gene with protein product Approved 3q13.33 03q13.33 FLJ10902 2005-01-10 2005-01-10 55254 ENSG00000176142 OTTHUMG00000159361 uc003eck.3 BC021277 NM_018266 CCDS2987 Q9NV64 12477932 MGI:1915096 RGD:1306421 TMEM39A +HGNC:25510 TMEM39B transmembrane protein 39B protein-coding gene gene with protein product Approved 1p35.2 01p35.2 FLJ10315 2005-01-10 2016-10-05 55116 ENSG00000121775 OTTHUMG00000004020 uc010ogv.3 AL136695 NM_018056 CCDS351 Q9GZU3 12477932 MGI:2682939 RGD:1359450 TMEM39B +HGNC:25620 TMEM40 transmembrane protein 40 protein-coding gene gene with protein product Approved 3p25.2 03p25.2 FLJ11036 2005-01-10 2014-11-18 55287 ENSG00000088726 OTTHUMG00000129801 uc062gwh.1 BC020658 NM_018306 "CCDS2613|CCDS68347|CCDS68348" Q8WWA1 12477932 MGI:2137870 RGD:1587025 TMEM40 +HGNC:30544 TMEM41A transmembrane protein 41A protein-coding gene gene with protein product Approved 3q27.2 03q27.2 MGC15397 2005-01-19 2014-11-19 90407 ENSG00000163900 OTTHUMG00000156660 uc003fpj.2 BC019884 NM_080652 CCDS3271 Q96HV5 12975309 MGI:1913914 RGD:1591692 TMEM41A +HGNC:28948 TMEM41B transmembrane protein 41B protein-coding gene gene with protein product Approved 11p15.4 11p15.4 KIAA0033 2005-01-19 2016-10-05 440026 ENSG00000166471 OTTHUMG00000165719 uc001mhn.4 D26067 XR_001747881 "CCDS31424|CCDS53600" Q5BJD5 "7584026|7584028" MGI:1289225 RGD:1310870 TMEM41B +HGNC:28444 TMEM42 transmembrane protein 42 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 MGC29956 2005-01-19 2015-08-26 131616 ENSG00000169964 OTTHUMG00000133092 uc003cnz.4 AL834253 NM_144638 CCDS2722 Q69YG0 12477932 MGI:1277176 RGD:1307118 TMEM42 +HGNC:28472 TMEM43 transmembrane protein 43 protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "MGC3222|DKFZp586G1919|LUMA" ARVD5 arrhythmogenic right ventricular dysplasia 5 2005-01-24 2016-10-12 79188 ENSG00000170876 OTTHUMG00000129802 uc003byk.3 BC008054 NM_024334 CCDS2618 Q9BTV4 "11230166|18313022" MGI:1921372 RGD:1549711 "ARVD/C Genetic Variants Database|http://grenada.lumc.nl/LOVD2/ARVC/home.php?select_db=TMEM43|LRG_435|http://www.lrg-sequence.org/LRG/LRG_435" TMEM43 612048 159517 +HGNC:25120 TMEM44 transmembrane protein 44 protein-coding gene gene with protein product Approved 3q29 03q29 DKFZp686O18124 2005-01-25 2016-04-25 93109 ENSG00000145014 OTTHUMG00000156023 uc011bsv.3 AL833026 NM_138399 "CCDS3308|CCDS33921|CCDS54698|CCDS54699" Q2T9K0 MGI:1924489 RGD:1563737 TMEM44 +HGNC:44272 TMEM44-AS1 TMEM44 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 TMEM44 antisense RNA 1 (non-protein coding) 2012-08-03 2012-08-15 2014-02-12 100507297 ENSG00000231770 OTTHUMG00000156027 uc031scw.2 "BE071707|BI088778|BM717338|BU741601" NR_047573 +HGNC:25480 TMEM45A transmembrane protein 45A protein-coding gene gene with protein product Approved 3q12.2 03q12.2 "FLJ10134|DERP7" 2005-02-04 2015-09-08 55076 ENSG00000181458 OTTHUMG00000150327 uc003dtz.2 AK000996 NM_018004 CCDS2937 Q9NWC5 12477932 MGI:1913122 RGD:6495353 TMEM45A 616928 +HGNC:25194 TMEM45B transmembrane protein 45B protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "BC016153|FLJ40787" 2005-02-04 2015-08-26 120224 ENSG00000151715 OTTHUMG00000165760 uc001qfe.2 AK098106 NM_138788 CCDS8482 Q96B21 12477932 MGI:2384574 RGD:1305586 TMEM45B +HGNC:18515 TMEM47 transmembrane protein 47 protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 "BCMP1|DKFZP761J17121|DKFZp564E153" TM4SF10 transmembrane 4 superfamily member 10 2003-07-10 2005-03-21 2005-03-21 2016-10-05 83604 ENSG00000147027 OTTHUMG00000021343 uc004ddh.3 AK090917 NM_031442 CCDS14235 Q9BQJ4 11472633 MGI:2177570 RGD:1564799 TMEM47 300698 +HGNC:30590 TMEM50A transmembrane protein 50A protein-coding gene gene with protein product Approved 1p36.11 01p36.11 SMP1 small membrane protein 1 2005-06-02 2014-11-19 23585 ENSG00000183726 OTTHUMG00000007651 uc001bke.4 AY071927 NM_014313 CCDS264 O95807 "10938938|10845894" MGI:1919067 RGD:1305638 TMEM50A 605348 +HGNC:1280 TMEM50B transmembrane protein 50B protein-coding gene gene with protein product Approved 21q22.11 21q22.11 C21orf4 chromosome 21 open reading frame 4 1998-08-06 2005-06-02 2005-06-02 2016-10-05 757 ENSG00000142188 OTTHUMG00000065286 uc061zqd.1 AF045606 NR_040016 CCDS13625 P56557 MGI:1925225 RGD:1307561 TMEM50B +HGNC:25488 TMEM51 transmembrane protein 51 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 FLJ10199 C1orf72 chromosome 1 open reading frame 72 2005-05-18 2005-05-22 2005-05-22 2014-11-18 55092 ENSG00000171729 OTTHUMG00000002046 uc010obk.3 AK098467 NM_018022 "CCDS154|CCDS81266" Q9NW97 12477932 MGI:2384874 RGD:1565452 TMEM51 +HGNC:26301 TMEM51-AS1 TMEM51 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.21 01p36.21 FLJ23703 C1orf126 chromosome 1 open reading frame 126 2005-06-23 2013-12-05 2013-12-05 2014-11-18 200197 ENSG00000175147 OTTHUMG00000002043 uc009voh.3 AK074283 NR_027136 +HGNC:27916 TMEM52 transmembrane protein 52 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 2005-07-15 2014-11-19 339456 ENSG00000178821 OTTHUMG00000000944 uc001aij.3 AJ278736 NM_178545 CCDS35 Q8NDY8 MGI:1916921 RGD:2318502 TMEM52 +HGNC:26438 TMEM52B transmembrane protein 52B protein-coding gene gene with protein product Approved 12p13.2 12p13.2 FLJ31166 C12orf59 chromosome 12 open reading frame 59 2006-02-09 2012-08-15 2012-08-15 2014-11-18 120939 ENSG00000165685 OTTHUMG00000168410 uc031yuk.2 AY358845 NM_153022 "CCDS8619|CCDS66314" Q4KMG9 12975309 MGI:2442838 RGD:1586337 TMEM52B +HGNC:26186 TMEM53 transmembrane protein 53 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "FLJ22353|NET4" 2005-06-07 2014-11-19 79639 ENSG00000126106 OTTHUMG00000007833 uc001cmc.4 NM_024587 "CCDS511|CCDS72773" Q6P2H8 12958361 MGI:1916027 RGD:1307066 TMEM53 +HGNC:24143 TMEM54 transmembrane protein 54 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 CAC-1 2005-06-28 2016-10-05 113452 ENSG00000121900 OTTHUMG00000004016 uc001bwi.2 NM_033504 CCDS371 Q969K7 9500206 MGI:1913510 RGD:1304886 TMEM54 +HGNC:25452 TMEM55A transmembrane protein 55A protein-coding gene gene with protein product Approved 8q21.3 08q21.3 DKFZp762O076 type II phosphatidylinositol-4,5-bisphosphate 4-phosphatase Phosphoinositide phosphatases 1079 2005-07-18 2015-08-07 55529 ENSG00000155099 OTTHUMG00000164019 uc003yes.5 BC033892 NM_018710 CCDS6252 Q8N4L2 16365287 MGI:1919769 RGD:1306225 TMEM55A 609864 3.1.3.78 +HGNC:19299 TMEM55B transmembrane protein 55B protein-coding gene gene with protein product Approved 14q11.2 14q11.2 MGC26684 type I phosphatidylinositol-4,5-bisphosphate 4-phosphatase C14orf9 chromosome 14 open reading frame 9 Phosphoinositide phosphatases 1079 2002-11-27 2005-07-18 2005-07-18 2016-10-05 90809 ENSG00000165782 OTTHUMG00000029545 uc001vxl.4 BC002867 NM_144568 "CCDS9551|CCDS41911" Q86T03 "16365287|17940011" MGI:2448501 RGD:1307475 TMEM55B 609865 3.1.3.78 +HGNC:26477 TMEM56 transmembrane protein 56 protein-coding gene gene with protein product Approved 1p21.3 01p21.3 FLJ31842 2005-07-19 2014-11-19 148534 ENSG00000152078 OTTHUMG00000010847 uc001drb.4 NM_152487 CCDS753 Q96MV1 MGI:1923195 RGD:1563041 TMEM56 +HGNC:49388 TMEM56-RWDD3 TMEM56-RWDD3 readthrough other readthrough Approved 1p21.3 01p21.3 2013-11-05 2013-11-05 100527978 ENSG00000271092 OTTHUMG00000184628 NM_001199691 CCDS60199 +HGNC:25572 TMEM57 transmembrane protein 57 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 FLJ10747 2005-07-22 2014-11-19 55219 ENSG00000204178 OTTHUMG00000003473 uc001bkk.5 AK001609 NM_018202 "CCDS30638|CCDS60034" Q8N5G2 "12459264|15255972" MGI:1913396 RGD:1561685 TMEM57 610301 +HGNC:1239 TMEM59 transmembrane protein 59 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 HSPC001 C1orf8 chromosome 1 open reading frame 8 1999-07-22 2005-07-22 2005-07-22 2014-11-19 9528 ENSG00000116209 OTTHUMG00000008437 uc001cwp.4 AF047439 NM_004872 "CCDS586|CCDS81329|CCDS81330" Q9BXS4 9653160 MGI:1929278 RGD:1310313 TMEM59 617084 +HGNC:13237 TMEM59L transmembrane protein 59 like protein-coding gene gene with protein product Approved 19p12 19p12 BSMAP C19orf4 chromosome 19 open reading frame 4 2002-09-13 2007-03-14 2015-11-23 2015-11-23 25789 ENSG00000105696 OTTHUMG00000183113 uc002njy.5 AF186264 NM_012109 CCDS12383 Q9UK28 10527841 MGI:1915187 RGD:1305557 TMEM59L 617096 +HGNC:21754 TMEM60 transmembrane protein 60 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 DC32 C7orf35 chromosome 7 open reading frame 35 2003-07-22 2005-07-25 2005-07-25 2014-11-19 85025 ENSG00000135211 OTTHUMG00000130689 uc003ugn.4 AF260336 NM_032936 CCDS5593 Q9H2L4 MGI:2673965 RGD:1308939 TMEM60 +HGNC:27296 TMEM61 transmembrane protein 61 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 2005-07-25 2015-09-11 199964 ENSG00000143001 OTTHUMG00000009991 uc001cyd.3 BC029775 NM_182532 CCDS601 Q8N0U2 12477932 MGI:3041156 RGD:1584102 TMEM61 +HGNC:26269 TMEM62 transmembrane protein 62 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 FLJ23375 2005-07-25 2014-09-11 80021 ENSG00000137842 OTTHUMG00000176485 uc001zqr.4 BC009981 NM_024956 CCDS32210 Q0P6H9 MGI:2139461 RGD:1305647 TMEM62 +HGNC:29118 TMEM63A transmembrane protein 63A protein-coding gene gene with protein product Approved 1q42.12 01q42.12 KIAA0792 KIAA0792 2005-05-16 2005-07-25 2005-07-25 2014-11-19 9725 ENSG00000196187 OTTHUMG00000037442 uc001hpm.3 NM_014698 CCDS31042 O94886 "9872452|9455484" MGI:2384789 RGD:1306829 TMEM63A +HGNC:17735 TMEM63B transmembrane protein 63B protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "DKFZp434P0531|dJ421H19.2" C6orf110 chromosome 6 open reading frame 110 2003-11-25 2005-07-25 2005-07-25 2014-11-19 55362 ENSG00000137216 OTTHUMG00000014757 uc063ovd.1 BC022095 XM_166410 CCDS34461 Q5T3F8 MGI:2387609 RGD:1305862 TMEM63B +HGNC:23787 TMEM63C transmembrane protein 63C protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "DKFZp434P0111|CSC1|hsCSC1" calcium permeable stress-gated cation channel 1 homolog (Arabidopsis) C14orf171 chromosome 14 open reading frame 171 2003-12-10 2005-07-25 2005-07-25 2015-08-26 57156 ENSG00000165548 OTTHUMG00000171557 uc001xtf.3 NM_020431 CCDS45141 Q9P1W3 24503647 MGI:2444386 RGD:1310207 TMEM63C +HGNC:25441 TMEM64 transmembrane protein 64 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 DKFZp762C1112 2005-07-29 2014-11-19 169200 ENSG00000180694 OTTHUMG00000157185 uc003yen.3 AL834364 NM_001008495 "CCDS34920|CCDS55260" Q6YI46 MGI:2140359 RGD:1596128 TMEM64 +HGNC:25203 TMEM65 transmembrane protein 65 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 2005-07-29 2015-03-02 157378 ENSG00000164983 OTTHUMG00000165021 uc010mdl.4 BC032396 NM_194291 CCDS6348 Q6PI78 24765583 MGI:1922118 RGD:1563224 TMEM65 616609 +HGNC:28396 TMEM67 transmembrane protein 67 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "MGC26979|JBTS6|NPHP11" Meckelin MKS3 Meckel syndrome, type 3 2005-08-04 2016-10-12 91147 ENSG00000164953 OTTHUMG00000153119 uc011lgk.3 BX648768 NM_153704 "CCDS6258|CCDS47893" Q5HYA8 "12384791|16415887|19508969" MGI:1923928 RGD:1586167 LRG_688|http://www.lrg-sequence.org/LRG/LRG_688 TMEM67 609884 120140 +HGNC:26510 TMEM68 transmembrane protein 68 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 FLJ32370 2005-08-04 2015-08-26 137695 ENSG00000167904 OTTHUMG00000164293 uc003xsh.3 AK056932 NM_152417 "CCDS6161|CCDS75740|CCDS75741|CCDS75742" Q96MH6 12477932 MGI:1919348 RGD:1309006 TMEM68 +HGNC:28035 TMEM69 transmembrane protein 69 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 FLJ21029 C1orf154 chromosome 1 open reading frame 154 2005-07-14 2005-08-17 2005-08-17 2014-11-19 51249 ENSG00000159596 OTTHUMG00000040993 uc001cor.2 "BC040289|BC013608" NM_016486 CCDS41325 Q5SWH9 MGI:3045357 RGD:1561569 TMEM69 +HGNC:26050 TMEM70 transmembrane protein 70 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 FLJ20533 2005-08-26 2016-02-12 54968 ENSG00000175606 OTTHUMG00000164502 uc003yab.4 BC002748 NM_017866 "CCDS6215|CCDS47876" Q9BUB7 "21945727|22986587" MGI:1915068 RGD:1566224 TMEM70 612418 169415 +HGNC:26572 TMEM71 transmembrane protein 71 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 FLJ33069 2005-09-02 2014-11-19 137835 ENSG00000165071 OTTHUMG00000164647 uc003ytn.4 AK057631 NM_144649 "CCDS6366|CCDS47921" Q6P5X7 12477932 MGI:2146049 RGD:1593414 TMEM71 +HGNC:31658 TMEM72 transmembrane protein 72 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "bA285G1.3|KSP37" C10orf127 chromosome 10 open reading frame 127 2004-04-28 2008-08-21 2008-08-21 2015-08-26 643236 ENSG00000187783 OTTHUMG00000018067 uc001jbn.3 AB235418 NM_001123376 CCDS41504 A0PK05 MGI:2442707 RGD:1308850 TMEM72 +HGNC:27349 TMEM72-AS1 TMEM72 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 TMEM72 antisense RNA 1 (non-protein coding) 2011-10-20 2012-08-15 2014-11-19 220980 ENSG00000224812 OTTHUMG00000018062 uc001jbk.1 NR_033842 +HGNC:26409 TMEM74 transmembrane protein 74 protein-coding gene gene with protein product Approved 8q23.1 08q23.1 "FLJ30668|NET36" 2005-09-22 2014-11-19 157753 ENSG00000164841 OTTHUMG00000164881 uc003ymy.2 AK055230 NM_153015 CCDS6310 Q96NL1 12477932 MGI:2443417 RGD:1566279 TMEM74 613935 +HGNC:15893 TMEM74B transmembrane protein 74B protein-coding gene gene with protein product Approved 20p13 20p13 FLJ11190 C20orf46 chromosome 20 open reading frame 46 2001-06-21 2011-11-23 2011-11-23 2014-11-19 55321 ENSG00000125895 OTTHUMG00000031655 uc002weq.2 AK002052 NM_018354 CCDS13011 Q9NUR3 MGI:1918629 RGD:1564048 +HGNC:32295 TMEM75 transmembrane protein 75 other unknown Approved 8q24.21 08q24.21 FLJ36105 2005-10-04 2015-02-02 641384 ENSG00000280055 OTTHUMG00000187197 uc003ysm.3 AK093424 NR_103558 Q8N9X5 TMEM75 +HGNC:32307 TMEM78 transmembrane protein 78 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 FLJ40168 2005-09-27 2014-11-19 677790 ENSG00000177800 OTTHUMG00000037629 uc057qfo.1 AK097487 Q5T7P6 TMEM78 +HGNC:28196 TMEM79 transmembrane protein 79 protein-coding gene gene with protein product Approved 1q22 01q22 "MGC13102|FLJ16057|FLJ32254|MATT" mattrin 2006-02-15 2014-11-19 84283 ENSG00000163472 OTTHUMG00000019788 uc010phi.3 BC005094 NM_032323 CCDS1138 Q9BSE2 MGI:1919163 RGD:1309886 TMEM79 615531 +HGNC:27453 TMEM80 transmembrane protein 80 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 FLJ38216 2005-10-18 2016-04-25 283232 ENSG00000177042 OTTHUMG00000133307 uc001lqr.6 NM_174940 "CCDS41587|CCDS73231" Q96HE8 12477932 MGI:1918698 RGD:1308399 TMEM80 +HGNC:32349 TMEM81 transmembrane protein 81 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "UNQ2788|MGC75217|HC3107|KVLA2788" Immunoglobulin like domain containing 594 2006-02-15 2014-11-19 388730 ENSG00000174529 OTTHUMG00000037103 uc001hbt.3 BC061592 NM_203376 CCDS1450 Q6P7N7 MGI:1921876 RGD:1561544 TMEM81 +HGNC:32350 TMEM82 transmembrane protein 82 protein-coding gene gene with protein product Approved 1p36.21 01p36.21 2007-08-02 2015-10-23 388595 ENSG00000162460 OTTHUMG00000003065 uc001axc.5 NM_001013641 CCDS30608 A0PJX8 MGI:2384869 RGD:1566169 TMEM82 +HGNC:26890 TMEM86A transmembrane protein 86A protein-coding gene gene with protein product Approved 11p15.1 11p15.1 FLJ90119 2005-10-28 2014-11-19 144110 ENSG00000151117 OTTHUMG00000167680 uc001moz.2 BC035692 NM_153347 CCDS7844 Q8N2M4 MGI:1915143 RGD:1305749 TMEM86A +HGNC:28448 TMEM86B transmembrane protein 86B protein-coding gene gene with protein product Approved 19q13.42 19q13.42 MGC30208 "alkenylglycerophosphocholine hydrolase|alkenylglycerophosphoethanolamine hydrolase" 2005-10-28 2015-10-26 255043 ENSG00000180089 OTTHUMG00000187285 uc002qju.4 BC023000 NM_173804 CCDS12920 Q8N661 21515882 MGI:1915505 RGD:1593455 TMEM86B "3.3.2.2|3.3.2.5" +HGNC:24522 TMEM87A transmembrane protein 87A protein-coding gene gene with protein product Approved 15q15.1 15q15.1 DKFZP564G2022 2005-10-30 2014-11-19 25963 ENSG00000103978 OTTHUMG00000172783 uc059icp.1 AF132733 NM_015497 "CCDS32205|CCDS45243|CCDS66742" Q8NBN3 12477932 MGI:2441844 RGD:1309417 TMEM87A +HGNC:25913 TMEM87B transmembrane protein 87B protein-coding gene gene with protein product Approved 2q13 02q13 FLJ14681 2005-10-30 2014-11-19 84910 ENSG00000153214 OTTHUMG00000153266 uc002thm.2 AC092645 NM_032824 CCDS33275 Q96K49 MGI:1919727 RGD:1307907 TMEM87B +HGNC:32371 TMEM88 transmembrane protein 88 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MGC71744|FLJ20025" 2005-12-13 2014-11-19 92162 ENSG00000167874 OTTHUMG00000178022 uc002giy.4 BC057812 NM_203411 "CCDS11121|CCDS82058" Q6PEY1 MGI:1914270 RGD:1561781 TMEM88 +HGNC:37099 TMEM88B transmembrane protein 88B protein-coding gene gene with protein product Approved 1p36.33 01p36.33 2010-01-14 2013-01-16 643965 ENSG00000205116 OTTHUMG00000153395 uc010nyp.2 NM_001146685 CCDS57964 A6NKF7 MGI:2444329 RGD:1588243 +HGNC:32372 TMEM89 transmembrane protein 89 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 2005-11-02 2014-11-19 440955 ENSG00000183396 OTTHUMG00000156647 uc011bbo.3 AX657016 NM_001008269 CCDS33751 A2RUT3 MGI:1916634 RGD:1564575 TMEM89 +HGNC:32393 TMEM91 transmembrane protein 91 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "FLJ27310|IFITMD6" interferon induced transmembrane protein domain containing 6 2005-11-25 2015-08-26 641649 ENSG00000142046 OTTHUMG00000168127 uc002oqk.5 "AK130820|BC063705" NM_001098824 "CCDS42571|CCDS42572|CCDS46082|CCDS46083|CCDS46084" Q6ZNR0 12477932 MGI:2443589 RGD:2323264 TMEM91 +HGNC:26579 TMEM92 transmembrane protein 92 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 FLJ33318 2005-12-13 2016-08-09 162461 ENSG00000167105 OTTHUMG00000162060 uc002iqn.2 NM_153229 CCDS11562 Q6UXU6 "12975309|22120523" MGI:3034723 RGD:1593405 TMEM92 +HGNC:50442 TMEM92-AS1 TMEM92 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.33 17q21.33 "RP11-893F2.9|lncRNA-508851|TCONS_00025237" 2014-04-25 2014-04-29 2014-04-29 2014-04-29 103752589 ENSG00000251179 OTTHUMG00000162058 BU687974 NR_125805 24768205 +HGNC:28983 TMEM94 transmembrane protein 94 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 KIAA0195 KIAA0195 2005-12-15 2015-10-07 2015-10-07 2015-10-07 9772 ENSG00000177728 NM_014738 "CCDS32732|CCDS82204" Q12767 8724849 MGI:1919197 +HGNC:27898 TMEM95 transmembrane protein 95 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MGC129793|UNQ9390" 2005-12-15 2015-08-26 339168 ENSG00000182896 OTTHUMG00000132899 uc002ggf.1 NM_198154 "CCDS32546|CCDS82051|CCDS82052" Q3KNT9 12975309 MGI:3779488 RGD:1593310 TMEM95 +HGNC:28106 TMEM97 transmembrane protein 97 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 MAC30 2006-02-10 2016-08-09 27346 ENSG00000109084 OTTHUMG00000132497 uc002hat.3 BC091504 NM_014573 CCDS11226 Q5BJF2 "7694637|15375745|19583955|27378690" MGI:1916321 RGD:1307423 TMEM97 612912 +HGNC:39640 TMEM97P1 transmembrane protein 97 pseudogene 1 pseudogene pseudogene Approved 21q22.3 21q22.3 2011-03-17 2011-03-17 100873880 ENSG00000234030 OTTHUMG00000154997 NG_032333 PGOHUM00000239183 +HGNC:39641 TMEM97P2 transmembrane protein 97 pseudogene 2 pseudogene pseudogene Approved 8p21.3 08p21.3 2011-03-17 2011-03-17 724059 ENSG00000253866 OTTHUMG00000163890 NG_005603 PGOHUM00000249265 +HGNC:24529 TMEM98 transmembrane protein 98 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 DKFZP564K1964 2005-12-16 2015-08-26 26022 ENSG00000006042 OTTHUMG00000132882 uc002hhq.4 CR605381 NM_015544 CCDS11274 Q9Y2Y6 11230166 MGI:1923457 RGD:1359736 TMEM98 615949 410701 +HGNC:28305 TMEM99 transmembrane protein 99 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 MGC21518 2005-12-16 2014-11-19 147184 ENSG00000167920 OTTHUMG00000133579 uc002hvj.2 AK097454 NM_145274 CCDS42319 Q8N816 12477932 TMEM99 +HGNC:25607 TMEM100 transmembrane protein 100 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "FLJ10970|FLJ37856" 2005-12-16 2015-03-02 55273 ENSG00000166292 OTTHUMG00000177858 uc002iuk.5 AK001832 NM_018286 CCDS11587 Q9NV29 25640077 MGI:1915138 RGD:1560541 TMEM100 616334 +HGNC:28653 TMEM101 transmembrane protein 101 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "MGC4251|FLJ23987" 2005-12-16 2014-11-19 84336 ENSG00000091947 OTTHUMG00000181803 uc002ieu.4 AK172826 NM_032376 CCDS11474 Q96IK0 12761501 MGI:1923797 RGD:1306490 TMEM101 +HGNC:26722 TMEM102 transmembrane protein 102 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "FLJ36878|CBAP" common beta-chain-associated protein 2005-12-16 2015-05-13 284114 ENSG00000181284 OTTHUMG00000132901 uc002ggx.1 AK094197 NM_178518 CCDS11104 Q8N9M5 23620790 MGI:1921591 RGD:1559450 TMEM102 613936 +HGNC:25984 TMEM104 transmembrane protein 104 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "FLJ20255|FLJ00021" 2005-12-19 2014-11-19 54868 ENSG00000109066 OTTHUMG00000179025 uc002jls.5 AK074029 NM_017728 "CCDS32723|CCDS82201" Q8NE00 MGI:2444222 RGD:1307953 TMEM104 +HGNC:26794 TMEM105 transmembrane protein 105 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 FLJ38792 2005-12-19 2008-04-21 2008-04-21 2014-11-19 284186 ENSG00000185332 OTTHUMG00000177905 uc002kad.4 AK096111 NM_178520 CCDS11781 Q8N8V8 RGD:9417102 TMEM105 +HGNC:28288 TMEM106A transmembrane protein 106A protein-coding gene gene with protein product Approved 17q21.31 17q21.31 MGC20235 2005-12-19 2016-08-09 113277 ENSG00000184988 OTTHUMG00000180879 uc002idn.2 AK056132 NM_145041 "CCDS11462|CCDS74073|CCDS77039" Q96A25 26215746 MGI:1922056 RGD:1309043 TMEM106A +HGNC:22407 TMEM106B transmembrane protein 106B protein-coding gene gene with protein product Approved 7p21.3 07p21.3 "MGC33727|FLJ11273" 2005-12-19 2014-11-19 54664 ENSG00000106460 OTTHUMG00000125537 uc011jxk.3 BC033901 NM_018374 CCDS5358 Q9NUM4 "20154673|22511793" MGI:1919150 RGD:1303037 TMEM106B 613413 +HGNC:28775 TMEM106C transmembrane protein 106C protein-coding gene gene with protein product Approved 12q13.1 12q13.1 MGC5576 2005-12-19 2014-11-19 79022 ENSG00000134291 OTTHUMG00000169892 uc001rqr.4 BC000854 NM_024056 "CCDS8758|CCDS44867" Q9BVX2 MGI:1196384 RGD:1311532 TMEM106C +HGNC:28128 TMEM107 transmembrane protein 107 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 MGC10744 2005-12-19 2014-11-19 84314 ENSG00000179029 OTTHUMG00000166276 uc002gkg.5 AF311338 NM_032354 "CCDS11132|CCDS45607" Q6UX40 12477932 MGI:1914160 RGD:1595972 TMEM107 616183 +HGNC:28451 TMEM108 transmembrane protein 108 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "MGC3040|CT124" cancer/testis antigen 124 2005-12-22 2014-11-18 66000 ENSG00000144868 OTTHUMG00000159685 uc003eph.5 AL136578 NM_023943 "CCDS33858|CCDS75012" Q6UXF1 11214970 MGI:1932411 RGD:1311530 TMEM108 +HGNC:50307 TMEM108-AS1 TMEM108 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q22.1 03q22.1 2014-04-07 2014-04-07 101927455 ENSG00000251011 OTTHUMG00000159722 NR_110812 +HGNC:28771 TMEM109 transmembrane protein 109 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 MGC5508 2005-12-22 2014-11-19 79073 ENSG00000110108 OTTHUMG00000167801 uc001nqg.4 NM_024092 CCDS7996 Q9BVC6 "8619474|9110174" MGI:1915789 RGD:1359538 TMEM109 +HGNC:30526 TMEM110 transmembrane protein 110 protein-coding gene gene with protein product Approved 3p21.1 03p21.1 MGC52022 2005-12-22 2014-11-19 375346 ENSG00000213533 OTTHUMG00000150346 uc062kra.1 BC047015 NM_198563 CCDS2866 Q86TL2 12477932 MGI:1921500 TMEM110 +HGNC:38834 TMEM110-MUSTN1 TMEM110-MUSTN1 readthrough other readthrough Approved 3p21.1 03p21.1 2011-02-21 2014-11-19 100526772 ENSG00000248592 OTTHUMG00000160756 uc003dgc.5 NM_001198974 CCDS56264 MGI:1921500 RGD:735152 +HGNC:33227 TMEM114 transmembrane protein 114 protein-coding gene gene with protein product Approved 16p13.2 16p13.2 2007-08-01 2015-08-26 283953 ENSG00000232258 OTTHUMG00000172868 uc032dql.1 BC150511 NM_001146336 "CCDS73825|CCDS76819|CCDS76820" B3SHH9 "17492639|21689651" MGI:1921970 RGD:1560593 TMEM114 611579 +HGNC:30055 TMEM115 transmembrane protein 115 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 PL6 placental protein 6 Rhomboid family 926 2006-01-13 2014-11-19 11070 ENSG00000126062 OTTHUMG00000044212 uc003dan.2 BC011948 NM_007024 CCDS2828 Q12893 11085536 MGI:1930765 RGD:1310540 TMEM115 607069 +HGNC:25084 TMEM116 transmembrane protein 116 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 FLJ90167 2006-01-20 2014-11-19 89894 ENSG00000198270 OTTHUMG00000169606 uc001ttf.3 AK074648 NM_138341 "CCDS9157|CCDS55886|CCDS55887" Q8NCL8 12477932 MGI:1924712 RGD:1596066 TMEM116 +HGNC:25308 TMEM117 transmembrane protein 117 protein-coding gene gene with protein product Approved 12q12 12q12 DKFZp434K2435 2006-01-20 2014-11-19 84216 ENSG00000139173 OTTHUMG00000169427 uc001rod.5 BC060798 NM_032256 "CCDS8745|CCDS73462" Q9H0C3 11230166 MGI:2444580 RGD:1562562 TMEM117 +HGNC:27884 TMEM119 transmembrane protein 119 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 2006-01-24 2014-11-19 338773 ENSG00000183160 OTTHUMG00000169410 uc001tng.4 AK075501 NM_181724 CCDS9119 Q4V9L6 12975309 MGI:2385228 RGD:1307573 TMEM119 +HGNC:21697 TMEM120A transmembrane protein 120A protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "TMPIT|NET29" 2007-08-01 2015-09-08 83862 ENSG00000189077 OTTHUMG00000156620 uc032ztu.2 AF327923 NM_031925 "CCDS64688|CCDS83192" Q9BXJ8 MGI:2686991 RGD:1311474 616550 +HGNC:32008 TMEM120B transmembrane protein 120B protein-coding gene gene with protein product Approved 12q24.31 12q24.31 2007-08-01 2015-09-08 144404 ENSG00000188735 OTTHUMG00000169076 uc001ubc.5 BC127768 NM_001080825 CCDS41852 A0PK00 MGI:3603158 RGD:1584031 TMEM120B 616551 +HGNC:20511 TMEM121 transmembrane protein 121 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "MGC4659|hole" 2006-02-15 2014-11-19 80757 ENSG00000184986 OTTHUMG00000029912 uc001yrp.2 NM_025268 CCDS10006 Q9BTD3 12204283 MGI:1916445 RGD:1597216 TMEM121 +HGNC:30138 TMEM123 transmembrane protein 123 protein-coding gene gene with protein product Approved 11q22.2 11q22.2 "PORIMIN|KCT3" pro oncosis receptor inducing membrane injury gene 2006-02-03 2016-10-05 114908 ENSG00000152558 OTTHUMG00000167326 uc001pha.4 AL050161 NM_052932 CCDS41702 Q8N131 "11481458|24318988" MGI:1919179 RGD:1305625 TMEM123 606356 +HGNC:28275 TMEM125 transmembrane protein 125 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 MGC17299 2006-02-13 2014-11-19 128218 ENSG00000179178 OTTHUMG00000007288 uc021oml.1 BC016858 NM_144626 CCDS480 Q96AQ2 MGI:1923409 RGD:1311937 TMEM125 +HGNC:25382 TMEM126A transmembrane protein 126A protein-coding gene gene with protein product Approved 11q14.1 11q14.1 "DKFZp586C1924|OPA7" 2006-02-13 2015-06-02 84233 ENSG00000171202 OTTHUMG00000166975 uc001par.4 NM_032273 "CCDS8268|CCDS58165" Q9H061 "11230166|23500070" MGI:1913521 RGD:1305677 TMEM126A 612988 232171 +HGNC:30883 TMEM126B transmembrane protein 126B protein-coding gene gene with protein product Approved 11q14.1 11q14.1 HT007 Mitochondrial respiratory chain complex assembly factors 645 2006-02-13 2016-06-16 55863 ENSG00000171204 OTTHUMG00000166974 uc001pap.5 NM_018480 "CCDS53686|CCDS8267" Q8IUX1 22982022 MGI:1915722 RGD:1308371 TMEM126B 615533 +HGNC:26038 TMEM127 transmembrane protein 127 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "FLJ20507|FLJ22257" 2006-02-13 2016-10-12 55654 ENSG00000135956 OTTHUMG00000130454 uc002svq.4 AK000514 NM_017849 CCDS2018 O75204 10493829 MGI:1916720 RGD:1309744 LRG_528|http://www.lrg-sequence.org/LRG/LRG_528 TMEM127 613403 227079 +HGNC:28201 TMEM128 transmembrane protein 128 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 MGC13159 2006-02-14 2014-11-19 85013 ENSG00000132406 OTTHUMG00000125475 uc003ghr.2 BC007729 NM_032927 "CCDS3373|CCDS75099" Q5BJH2 MGI:1913559 RGD:1310481 TMEM128 +HGNC:25137 TMEM129 transmembrane protein 129 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 D4S2561E transmembrane protein 129, E3 ubiquitin protein ligase 2006-02-14 2015-11-20 2015-11-20 92305 ENSG00000168936 OTTHUMG00000121150 uc003gdn.4 BC009331 NM_138385 "CCDS3351|CCDS46998" A0AVI4 "24807418|25030448" MGI:1915616 RGD:1310828 TMEM129 615975 +HGNC:25429 TMEM130 transmembrane protein 130 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "DKFZp761L1417|FLJ42643" 2006-02-20 2014-11-18 222865 ENSG00000166448 OTTHUMG00000154419 uc011kir.3 NM_152913 "CCDS5658|CCDS47649|CCDS47650" Q8N3G9 12975309 MGI:3607706 RGD:1563248 TMEM130 +HGNC:30366 TMEM131 transmembrane protein 131 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "CC28|YR-23|RW1|KIAA0257|PRO1048" 2006-02-24 2014-11-19 23505 ENSG00000075568 OTTHUMG00000153061 uc002syh.5 AK025852 XM_371542 CCDS46368 Q92545 "9039502|10996388" MGI:1927110 RGD:1309266 TMEM131 615659 +HGNC:31092 TMEM132A transmembrane protein 132A protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "GBP|FLJ20539" HSPA5BP1 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) binding protein 1 2004-02-04 2006-03-02 2006-03-02 2014-11-19 54972 ENSG00000006118 OTTHUMG00000167803 uc001nqi.4 AK000546 NM_017870 "CCDS7997|CCDS44618" Q24JP5 "12514190|10997877" MGI:2147810 RGD:727936 TMEM132A +HGNC:29397 TMEM132B transmembrane protein 132B protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "KIAA1906|KIAA1786" 2006-03-02 2015-09-08 114795 ENSG00000139364 OTTHUMG00000168520 uc001uhe.3 AB067493 NM_052907 "CCDS41859|CCDS66501" Q14DG7 11572484 MGI:3609245 RGD:1566191 TMEM132B +HGNC:25436 TMEM132C transmembrane protein 132C protein-coding gene gene with protein product Approved 12q24.32 12q24.32 "DKFZp761O2018|PPP1R152" protein phosphatase 1, regulatory subunit 152 Protein phosphatase 1 regulatory subunits 694 2006-03-02 2014-11-19 92293 ENSG00000181234 OTTHUMG00000163736 uc021rgn.1 AK126715 XM_044062 CCDS45009 Q8N3T6 MGI:2443061 RGD:1583824 TMEM132C +HGNC:29411 TMEM132D transmembrane protein 132D protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "KIAA1944|MOLT|PPP1R153" protein phosphatase 1, regulatory subunit 153 Protein phosphatase 1 regulatory subunits 694 2006-03-02 2016-10-05 121256 ENSG00000151952 OTTHUMG00000168400 uc009zyl.2 AB061814 NM_133448 CCDS9266 Q14C87 "11853319|12966072" MGI:3044963 RGD:735062 TMEM132D 611257 +HGNC:26991 TMEM132E transmembrane protein 132E protein-coding gene gene with protein product Approved 17q12 17q12 DFNB99 2006-03-02 2014-11-28 124842 ENSG00000181291 OTTHUMG00000132927 uc284oib.1 BN000149 NM_207313 CCDS11283 Q6IEE7 25331638 MGI:2685490 RGD:1565522 TMEM132E 616178 +HGNC:24033 TMEM133 transmembrane protein 133 protein-coding gene gene with protein product Approved 11q22.1 11q22.1 AD031 2006-03-08 2014-11-19 83935 ENSG00000170647 OTTHUMG00000167577 uc001pgf.4 AF247167 NM_032021 CCDS8309 Q9H2Q1 12477932 TMEM133 +HGNC:26142 TMEM134 transmembrane protein 134 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 FLJ21749 2006-03-09 2014-11-19 80194 ENSG00000172663 OTTHUMG00000168034 uc001olq.3 AK025402 NM_025124 "CCDS8167|CCDS41678" Q9H6X4 MGI:1914240 RGD:1305824 TMEM134 +HGNC:26167 TMEM135 transmembrane protein 135 protein-coding gene gene with protein product Approved 11q14.2 11q14.2 FLJ22104 2006-03-09 2014-11-19 65084 ENSG00000166575 OTTHUMG00000167248 uc001pch.4 BX648678 NM_022918 "CCDS8280|CCDS53692" Q86UB9 12477932 MGI:1920009 RGD:1309948 TMEM135 616360 +HGNC:28280 TMEM136 transmembrane protein 136 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 MGC17839 2006-03-10 2014-11-19 219902 ENSG00000181264 OTTHUMG00000166142 uc001pxh.2 BC015232 NM_174926 "CCDS8432|CCDS55792|CCDS55793" Q6ZRR5 12477932 MGI:2685030 RGD:1565079 TMEM136 +HGNC:28252 TMEM137 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-15 +HGNC:26944 TMEM138 transmembrane protein 138 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "HSPC196|JBTS16" 2006-03-15 2014-11-19 51524 ENSG00000149483 OTTHUMG00000168145 uc001nrl.3 AF151030 NM_016464 "CCDS8005|CCDS81569" Q9NPI0 MGI:1920232 RGD:735168 TMEM138 614459 292990 +HGNC:22058 TMEM139 transmembrane protein 139 protein-coding gene gene with protein product Approved 7q34 07q34 FLJ90586 2006-03-17 2015-08-26 135932 ENSG00000178826 OTTHUMG00000152652 uc064iuz.1 AK075067 NM_153345 CCDS5878 Q8IV31 MGI:1924444 RGD:1594187 TMEM139 616524 +HGNC:21870 TMEM140 transmembrane protein 140 protein-coding gene gene with protein product Approved 7q33 07q33 FLJ11000 2006-03-17 2014-11-19 55281 ENSG00000146859 OTTHUMG00000155413 uc003vsi.4 AK001862 NM_018295 CCDS5837 Q9NV12 MGI:1915737 RGD:1549759 TMEM140 +HGNC:28211 TMEM141 transmembrane protein 141 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 MGC14141 2006-03-21 2015-08-26 85014 ENSG00000244187 OTTHUMG00000020945 uc004cje.5 BC007834 NM_032928 CCDS7007 Q96I45 MGI:1098773 RGD:1561492 TMEM141 +HGNC:25603 TMEM143 transmembrane protein 143 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 FLJ10922 2006-03-24 2014-11-19 55260 ENSG00000161558 OTTHUMG00000183197 uc002pix.2 AK129801 NM_018273 "CCDS12716|CCDS77325|CCDS77326" Q96AN5 12975309 MGI:1917459 RGD:1305013 TMEM143 +HGNC:25633 TMEM144 transmembrane protein 144 protein-coding gene gene with protein product Approved 4q32.1 04q32.1 FLJ11155 2006-03-24 2014-11-19 55314 ENSG00000164124 OTTHUMG00000162013 uc003ipx.4 AK002017 NM_018342 CCDS3799 Q7Z5S9 12477932 MGI:1917902 RGD:1565845 TMEM144 +HGNC:26912 TMEM145 transmembrane protein 145 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ90805 2006-03-24 2014-11-19 284339 ENSG00000167619 OTTHUMG00000177694 uc002otk.2 AK075286 NM_173633 CCDS12603 Q8NBT3 MGI:3607779 RGD:1595911 TMEM145 +HGNC:30414 TMEM147 transmembrane protein 147 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "NIFIE14|MGC1936" 2006-03-31 2014-11-19 10430 ENSG00000105677 OTTHUMG00000048105 uc002oaj.3 BC001118 NM_032635 "CCDS12466|CCDS56091" Q9BVK8 20538592 MGI:1915011 RGD:1304706 TMEM147 613585 +HGNC:51273 TMEM147-AS1 TMEM147 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2014-08-22 2014-08-22 100506469 ENSG00000236144 OTTHUMG00000048104 CR627053 NR_038396 +HGNC:24677 TMEM150A transmembrane protein 150A protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "TM6P1|FLJ90024" TMEM150 transmembrane protein 150 2006-05-08 2009-06-12 2009-06-12 2014-11-19 129303 ENSG00000168890 OTTHUMG00000130168 uc002spy.3 AK098152 NM_153342 CCDS33233 Q86TG1 10858565 MGI:2385244 RGD:619998 TMEM150A 616757 +HGNC:34415 TMEM150B transmembrane protein 150B protein-coding gene gene with protein product Approved 19q13.42 19q13.42 TMEM224 transmembrane protein 224 2009-02-24 2009-06-12 2009-06-12 2014-11-19 284417 ENSG00000180061 OTTHUMG00000180709 uc010yfu.3 BC020862 NM_001085488 CCDS42629 A6NC51 MGI:2679718 RGD:1306181 TMEM150B +HGNC:37263 TMEM150C transmembrane protein 150C protein-coding gene gene with protein product Approved 4q21.22 04q21.22 FLJ12993 2009-09-09 2010-06-25 441027 ENSG00000249242 OTTHUMG00000161083 uc011ccj.2 BC147027 NM_001080506 CCDS47087 B9EJG8 MGI:3041258 RGD:1306105 TMEM150C +HGNC:28497 TMEM151A transmembrane protein 151A protein-coding gene gene with protein product Approved 11q13.2 11q13.2 MGC33486 TMEM151 transmembrane protein 151 2006-05-10 2007-10-25 2007-10-25 2014-11-19 256472 ENSG00000179292 OTTHUMG00000166920 uc001ohl.4 BC033898 NM_153266 CCDS8133 Q8N4L1 12477932 MGI:2147713 RGD:1310680 TMEM151A +HGNC:21315 TMEM151B transmembrane protein 151B protein-coding gene gene with protein product Approved 6p21.1 06p21.1 bA444E17.5 "C6orf137|TMEM193" "chromosome 6 open reading frame 137|transmembrane protein 193" 2003-11-26 2007-10-25 2007-10-25 2014-11-19 441151 ENSG00000178233 OTTHUMG00000014765 uc003oxh.3 AK126839 NM_001039704 CCDS47437 Q8IW70 MGI:2685169 RGD:1562074 TMEM151B +HGNC:26489 TMEM154 transmembrane protein 154 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 FLJ32028 2006-05-22 2014-11-19 201799 ENSG00000170006 OTTHUMG00000161463 uc003imw.3 AK056590 NM_152680 CCDS3779 Q6P9G4 12477932 MGI:2444725 RGD:1563262 TMEM154 +HGNC:26418 TMEM155 transmembrane protein 155 protein-coding gene gene with protein product Approved 4q27 04q27 FLJ30834 2006-05-22 2015-07-22 132332 ENSG00000164112 OTTHUMG00000133035 uc003idx.2 AK055396 NM_152399 CCDS3721 Q4W5P6 TMEM155 +HGNC:26260 TMEM156 transmembrane protein 156 protein-coding gene gene with protein product Approved 4p14 04p14 FLJ23235 2006-05-22 2015-08-26 80008 ENSG00000121895 OTTHUMG00000128582 uc003gto.4 AK026888 NM_024943 CCDS3448 Q8N614 12477932 MGI:2685292 RGD:1562424 TMEM156 +HGNC:30293 TMEM158 transmembrane protein 158 (gene/pseudogene) protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "RIS1|p40BBp" Ras induced senescence 1 transmembrane protein 158 2006-07-11 2010-03-12 2014-11-19 25907 ENSG00000249992 OTTHUMG00000160317 uc011baf.3 AF438313 NM_015444 CCDS54573 Q8WZ71 "11399754|11822868" MGI:1919559 RGD:708473 TMEM158 +HGNC:30136 TMEM159 transmembrane protein 159 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 promethin 2006-06-14 2016-10-05 57146 ENSG00000011638 OTTHUMG00000131559 uc002dih.5 AF070596 NM_020422 "CCDS10595|CCDS76841|CCDS76842" Q96B96 "8619474|9110174|15589683" MGI:1925752 RGD:727895 TMEM159 611304 +HGNC:26042 TMEM160 transmembrane protein 160 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 FLJ20512 2006-06-19 2014-11-18 54958 ENSG00000130748 OTTHUMG00000183441 uc002pfz.4 AK000519 NM_017854 CCDS12695 Q9NX00 12477932 MGI:1916344 RGD:1564549 TMEM160 +HGNC:26020 TMEM161A transmembrane protein 161A protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "FLJ39645|FLJ20422" 2006-06-21 2014-11-19 54929 ENSG00000064545 OTTHUMG00000182217 uc002nlg.5 BC005210 NM_017814 "CCDS12393|CCDS58656" Q9NX61 12975309 MGI:2384577 RGD:1307703 TMEM161A +HGNC:28483 TMEM161B transmembrane protein 161B protein-coding gene gene with protein product Approved 5q14.3 05q14.3 MGC33214 2006-06-21 2014-11-19 153396 ENSG00000164180 OTTHUMG00000131323 uc003kjc.5 BC037287 NM_153354 "CCDS4065|CCDS75269|CCDS75270" Q8NDZ6 12477932 MGI:1919995 RGD:1309660 TMEM161B +HGNC:43839 TMEM161B-AS1 TMEM161B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q14.3 05q14.3 linc-POLR3G-8 TMEM161B antisense RNA 1 (non-protein coding) Long non-coding RNAs 788 2012-03-26 2012-08-15 2014-10-22 100505894 ENSG00000247828 OTTHUMG00000162704 uc003kje.5 AK082072 NR_039993 21890647 AK082072 +HGNC:44973 TMEM161BP1 transmembrane protein 161B pseudogene 1 pseudogene pseudogene Approved 10p11.21 10p11.21 2012-12-20 2012-12-20 646360 ENSG00000237970 OTTHUMG00000017972 NG_022901 PGOHUM00000251264 +HGNC:25380 TMEM163 transmembrane protein 163 protein-coding gene gene with protein product Approved 2q21.3 02q21.3 "DKFZP566N034|SV31" 2006-07-04 2014-11-19 81615 ENSG00000152128 OTTHUMG00000131713 uc002ttx.4 NM_030923 CCDS2172 Q8TC26 17623043 MGI:1919410 RGD:1306212 TMEM163 +HGNC:26217 TMEM164 transmembrane protein 164 protein-coding gene gene with protein product Approved Xq23 Xq23 "FLJ22679|RP13-360B22.2" 2006-07-11 2016-10-05 84187 ENSG00000157600 OTTHUMG00000022192 uc065arn.1 AK094127 NM_032227 "CCDS14550|CCDS55475" Q5U3C3 12477932 MGI:2148020 RGD:1563286 TMEM164 +HGNC:30760 TMEM165 transmembrane protein 165 protein-coding gene gene with protein product Approved 4q12 04q12 "TMPT27|TPARL|GDT1" TPA regulated locus 2006-07-17 2014-11-19 55858 ENSG00000134851 OTTHUMG00000128735 uc003hax.4 AF183409 NM_018475 CCDS3499 Q9HC07 "3202867|22683087|23575229" MGI:894407 RGD:1306983 TMEM165 614726 317781 +HGNC:28330 TMEM167A transmembrane protein 167A protein-coding gene gene with protein product Approved 5q14.2 05q14.2 "FLJ30508|MGC23909" TMEM167 transmembrane protein 167 2006-08-07 2008-06-06 2008-06-06 2015-05-05 153339 ENSG00000174695 OTTHUMG00000162570 uc003khx.5 "BC107575|AK055070" NM_174909 CCDS34198 Q8TBQ9 1316117 MGI:1913324 RGD:2323318 TMEM167A +HGNC:23956 TMEM167AP1 transmembrane protein 167A pseudogene 1 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-02-11 2016-10-05 360028 ENSG00000226504 OTTHUMG00000036541 NG_002949 12815422 PGOHUM00000233792 +HGNC:30187 TMEM167B transmembrane protein 167B protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "AD-020|FLJ90710" C1orf119 chromosome 1 open reading frame 119 2005-06-21 2008-06-06 2008-06-06 2014-11-19 56900 ENSG00000215717 OTTHUMG00000042364 uc001dwn.4 NM_020141 CCDS30789 Q9NRX6 12477932 MGI:1914745 RGD:1564454 TMEM167B +HGNC:25826 TMEM168 transmembrane protein 168 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 "DKFZp564C012|FLJ13576" 2006-08-08 2016-10-05 64418 ENSG00000146802 OTTHUMG00000155188 uc003vgn.5 NM_022484 CCDS5757 Q9H0V1 12477932 MGI:1921794 RGD:1307778 TMEM168 +HGNC:25130 TMEM169 transmembrane protein 169 protein-coding gene gene with protein product Approved 2q35 02q35 FLJ34263 2006-08-15 2014-11-19 92691 ENSG00000163449 OTTHUMG00000133053 uc010zjr.3 AK091582 NM_138390 CCDS2401 Q96HH4 12477932 MGI:2442781 RGD:1582820 TMEM169 +HGNC:29577 TMEM170A transmembrane protein 170A protein-coding gene gene with protein product Approved 16q23.1 16q23.1 FLJ37611 TMEM170 transmembrane protein 170 2006-08-17 2008-06-10 2008-06-10 2016-07-19 124491 ENSG00000166822 OTTHUMG00000137614 uc002fee.2 BX648484 NM_145254 "CCDS10917|CCDS76899|CCDS76900|CCDS76901" Q8WVE7 "12477932|26906412" MGI:106426 RGD:1559505 TMEM170A +HGNC:34244 TMEM170B transmembrane protein 170B protein-coding gene gene with protein product Approved 6p24.2 06p24.2 2008-06-10 2016-10-05 100113407 ENSG00000205269 OTTHUMG00000014259 uc010jpa.5 NM_001100829 CCDS43425 Q5T4T1 MGI:3647046 RGD:1561506 TMEM170B +HGNC:27031 TMEM171 transmembrane protein 171 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 PRP2 2006-08-18 2014-11-19 134285 ENSG00000157111 OTTHUMG00000131269 uc003kcm.3 BC018083 NM_173490 "CCDS4017|CCDS54869" Q8WVE6 12477932 MGI:2685751 RGD:1359492 TMEM171 +HGNC:27962 TMEM173 transmembrane protein 173 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "FLJ38577|NET23" 2006-08-24 2014-11-19 340061 ENSG00000184584 OTTHUMG00000129239 uc003lep.4 NM_198282 CCDS4215 Q86WV6 12477932 MGI:1919762 RGD:1562552 TMEM173 612374 438066 objectId:2902 +HGNC:28187 TMEM174 transmembrane protein 174 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "MGC13034|FLJ31268" 2006-08-25 2014-11-18 134288 ENSG00000164325 OTTHUMG00000131268 uc010izc.4 BC019346 NM_153217 CCDS4018 Q8WUU8 12477932 MGI:1915594 RGD:1561129 TMEM174 614909 +HGNC:28709 TMEM175 transmembrane protein 175 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 MGC4618 2006-08-29 2015-09-29 84286 ENSG00000127419 OTTHUMG00000118996 uc003gbq.4 BC005158 NM_032326 "CCDS3341|CCDS75087|CCDS75088" Q9BSA9 26317472 MGI:1919642 RGD:1309712 TMEM175 616660 +HGNC:24930 TMEM176A transmembrane protein 176A protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "HCA112|MS4B1" Membrane spanning 4-domains 958 2006-09-04 2015-06-04 55365 ENSG00000002933 OTTHUMG00000158114 uc064jeh.1 AF258340 NM_018487 CCDS5909 Q96HP8 "12097419|8889548" MGI:1913308 RGD:1310725 TMEM176A 610334 +HGNC:29596 TMEM176B transmembrane protein 176B protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "LR8|MS4B2" Membrane spanning 4-domains 958 2006-09-04 2015-06-04 28959 ENSG00000106565 OTTHUMG00000157577 uc003whw.5 AF115384 NM_014020 "CCDS5908|CCDS47746" Q3YBM2 9922225 MGI:1916348 RGD:708403 TMEM176B 610385 +HGNC:28143 TMEM177 transmembrane protein 177 protein-coding gene gene with protein product Approved 2q14.2 02q14.2 MGC10993 2006-09-08 2014-11-19 80775 ENSG00000144120 OTTHUMG00000153312 uc010flg.1 BC004404 NM_030577 CCDS2128 Q53S58 12477932 MGI:1913593 RGD:1310320 TMEM177 +HGNC:28517 TMEM178A transmembrane protein 178A protein-coding gene gene with protein product Approved 2p22.1 02p22.1 MGC33926 TMEM178 transmembrane protein 178 2006-09-18 2012-06-29 2012-06-29 2014-11-19 130733 ENSG00000152154 OTTHUMG00000128591 uc002rrt.5 BC029530 NM_152390 CCDS1804 Q8NBL3 12975309 MGI:1915277 RGD:1303057 +HGNC:44112 TMEM178B transmembrane protein 178B protein-coding gene gene with protein product Approved 7q34 07q34 DKFZp547G036 2012-06-29 2012-06-29 100507421 ENSG00000261115 OTTHUMG00000172737 uc003vwg.3 XM_011515705 CCDS59086 H3BS89 MGI:3647581 RGD:1585938 +HGNC:20137 TMEM179 transmembrane protein 179 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "FLJ42486|TMEM179A" C14orf90 chromosome 14 open reading frame 90 2002-12-18 2006-10-16 2006-10-16 2015-08-26 388021 ENSG00000258986 OTTHUMG00000170829 uc032bmk.2 AK124477 NM_207379 "CCDS66723|CCDS73688" Q6ZVK1 MGI:2144891 RGD:1310269 TMEM179 +HGNC:33744 TMEM179B transmembrane protein 179B protein-coding gene gene with protein product Approved 11q12.3 11q12.3 2007-11-26 2015-09-08 374395 ENSG00000185475 OTTHUMG00000167611 uc001nvd.5 BC051355 NM_199337 CCDS8036 Q7Z7N9 MGI:1914956 RGD:1582850 TMEM179B +HGNC:20958 TMEM181 transmembrane protein 181 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "KIAA1423|GPR178" "G protein-coupled receptor 178|KIAA1423" 2003-11-21 2006-10-19 2006-10-19 2015-09-08 57583 ENSG00000146433 OTTHUMG00000015913 uc003qrm.5 AB037844 NM_020823 CCDS43520 Q9P2C4 16452613 MGI:1924356 RGD:1566403 TMEM181 613209 +HGNC:26391 TMEM182 transmembrane protein 182 protein-coding gene gene with protein product Approved 2q12.1 02q12.1 FLJ30294 2006-10-26 2015-08-26 130827 ENSG00000170417 OTTHUMG00000130779 uc002tcc.5 AK054856 NM_144632 "CCDS2064|CCDS82489|CCDS82490" Q6ZP80 12477932 MGI:1923725 RGD:1563696 TMEM182 +HGNC:20173 TMEM183A transmembrane protein 183A protein-coding gene gene with protein product Approved 1q32.1 01q32.1 C1orf37 chromosome 1 open reading frame 37 2002-12-19 2006-12-18 2006-12-18 2016-10-05 92703 ENSG00000163444 OTTHUMG00000042051 uc001gyu.2 BC013073 NM_138391 CCDS1432 Q8IXX5 MGI:1914729 RGD:1309892 TMEM183A +HGNC:33458 TMEM183AP1 transmembrane protein 183A pseudogene 1 pseudogene pseudogene Approved 6p21.3 06p21.3 "BPG126D10.10|OTTHUMG00000086663" 2007-05-01 2014-11-19 100048909 ENSG00000227609 OTTHUMG00000086663 NG_031894 +HGNC:33205 TMEM183B transmembrane protein 183B protein-coding gene gene with protein product Approved 3q25.1 03q25.1 C1orf37-DUP 2006-12-18 2006-12-18 2014-02-12 653659 DQ186292 NM_001079809 Q1AE95 16644869 611365 +HGNC:28797 TMEM184A transmembrane protein 184A protein-coding gene gene with protein product Approved 7p22.3 07p22.3 "MGC9712|SDMG1" sexually dimorphic, expressed in male gonads 1 2007-07-11 2016-07-21 202915 ENSG00000164855 OTTHUMG00000119025 uc003skv.4 NM_152689 CCDS43537 Q6ZMB5 18321981 MGI:2385897 RGD:1306702 TMEM184A +HGNC:1310 TMEM184B transmembrane protein 184B protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "HS5O6A|DKFZP586A1024|FM08" C22orf5 chromosome 22 open reading frame 5 2000-03-29 2007-07-11 2007-07-11 2016-10-05 25829 ENSG00000198792 OTTHUMG00000030557 uc003avg.2 AL096879 NM_012264 CCDS13969 Q9Y519 10591208 MGI:2445179 RGD:1306591 TMEM184B +HGNC:25587 TMEM184C transmembrane protein 184C protein-coding gene gene with protein product Approved 4q31.22 04q31.22 FLJ10846 TMEM34 transmembrane protein 34 2004-07-28 2008-06-05 2008-06-05 2014-11-19 55751 ENSG00000164168 OTTHUMG00000161358 uc003ila.5 AF305823 NM_018241 CCDS3770 Q9NVA4 MGI:2384562 RGD:727852 TMEM184C 613937 +HGNC:17125 TMEM185A transmembrane protein 185A protein-coding gene gene with protein product Approved Xq28 Xq28 FRAXF "CXorf13|FAM11A" "chromosome X open reading frame 13|family with sequence similarity 11, member A" 2001-11-20 2007-02-05 2007-02-05 2015-09-08 84548 ENSG00000269556 OTTHUMG00000022625 uc033ezr.1 AF353675 NM_032508 "CCDS14689|CCDS55523|CCDS76041" Q8NFB2 12404111 MGI:2448555 RGD:1563037 TMEM185A 300031 172996 +HGNC:31717 TMEM185AP1 transmembrane protein 185A pseudogene 1 pseudogene pseudogene Approved Xq28 Xq28 TMEM185AL "family with sequence similarity 11, member C|transmembrane protein 185A-like" 2005-03-22 2012-04-20 2012-04-20 2014-11-19 100506205 ENSG00000235254 OTTHUMG00000022629 NG_029343 PGOHUM00000257277 +HGNC:18896 TMEM185B transmembrane protein 185B protein-coding gene gene with protein product Approved 2q14.2 02q14.2 FLJ20979 FAM11B "family with sequence similarity 11, member B|transmembrane protein 185B (pseudogene)" 2004-01-06 2007-02-05 2011-05-27 2015-09-08 79134 ENSG00000226479 OTTHUMG00000154402 uc002tmj.3 AK024632 NM_024121.2 CCDS58722 Q9H7F4 12404111 MGI:1917634 RGD:1309602 TMEM185B +HGNC:24530 TMEM186 transmembrane protein 186 protein-coding gene gene with protein product Approved 16p13.2 16p13.2 DKFZP564K2062 C16orf51 chromosome 16 open reading frame 51 2005-03-10 2007-02-08 2007-02-08 2014-11-19 25880 ENSG00000184857 OTTHUMG00000129696 uc002cze.3 BC015912 NM_015421 CCDS10535 Q96B77 11230166 MGI:1913940 RGD:1561167 TMEM186 +HGNC:13705 TMEM187 transmembrane protein 187 protein-coding gene gene with protein product Approved Xq28 Xq28 "ITBA1|DXS9878E" CXorf12 chromosome X open reading frame 12 2000-11-07 2007-03-14 2007-03-14 2014-11-19 8269 ENSG00000177854 OTTHUMG00000024220 uc004fjq.3 X92475 NM_003492 CCDS14739 Q14656 8661027 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TMEM187 TMEM187 300059 +HGNC:16735 TMEM189 transmembrane protein 189 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 Kua 2007-07-27 2014-11-19 387521 ENSG00000240849 OTTHUMG00000152625 uc002xvg.3 AF155120 NM_199129 "CCDS13428|CCDS54473" A5PLL7 11076860 MGI:2142624 RGD:1309093 TMEM189 610994 +HGNC:33521 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough other readthrough Approved 20q13.13 20q13.13 "Kua-UEV|CROC-1B" 2007-07-31 2014-11-18 387522 ENSG00000124208 OTTHUMG00000033085 uc002xvf.4 U39361 NM_199203 CCDS13424 11076860 TMEM189-UBE2V1 +HGNC:29632 TMEM190 transmembrane protein 190 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 MDAC1 2007-07-31 2014-11-19 147744 ENSG00000160472 OTTHUMG00000180794 uc002qkt.1 AF442729 NM_139172 CCDS33113 Q8WZ59 21273369 MGI:1925302 RGD:1583927 TMEM190 +HGNC:25317 TMEM191A transmembrane protein 191A (pseudogene) pseudogene pseudogene Approved 22q11.21 22q11.21 "DKFZp434N035|TMEM191AP" transmembrane protein 191A 2007-08-14 2012-04-20 2014-11-19 84222 ENSG00000226287 OTTHUMG00000150164 uc002zsx.2 AL136879 NR_026815 Q9H0A3 11230166 +HGNC:33600 TMEM191B transmembrane protein 191B protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2007-08-14 2015-09-08 728229 ENSG00000278558 OTTHUMG00000188353 uc021wlv.2 XM_001128423 CCDS74816 P0C7N4 +HGNC:33601 TMEM191C transmembrane protein 191C protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2007-08-14 2016-07-19 645426 ENSG00000206140 OTTHUMG00000150780 uc002zuu.3 NM_001207052 CCDS82695 A6NGB0 RGD:1587016 +HGNC:26775 TMEM192 transmembrane protein 192 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 FLJ38482 2007-10-25 2014-11-19 201931 ENSG00000170088 OTTHUMG00000161254 uc003iqz.5 BC036301 NM_152681 CCDS43279 Q8IY95 12477932 MGI:1920317 RGD:1309341 TMEM192 +HGNC:22431 TMEM196 transmembrane protein 196 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 MGC42090 2007-11-21 2016-10-05 256130 ENSG00000173452 OTTHUMG00000152504 uc011jyg.3 NM_152774 CCDS34607 Q5HYL7 MGI:2685374 RGD:1562527 TMEM196 +HGNC:33704 TMEM198 transmembrane protein 198 protein-coding gene gene with protein product Approved 2q35 02q35 "MGC99813|TMEM198A" 2007-12-17 2014-11-19 130612 ENSG00000188760 OTTHUMG00000059156 uc002vme.5 BC068567 NM_001005209 CCDS33385 Q66K66 MGI:2443133 RGD:2319152 TMEM198 +HGNC:43629 TMEM198B transmembrane protein 198B (pseudogene) pseudogene pseudogene Approved 12q13.2 12q13.2 transmembrane protein 198, pseudogene 2011-12-06 2016-01-06 2016-01-06 440104 ENSG00000182796 OTTHUMG00000154568 NR_036476 MGI:1921077 +HGNC:18085 TMEM199 transmembrane protein 199 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "MGC45714|VPH2|VMA12" C17orf32 chromosome 17 open reading frame 32 2002-01-30 2007-12-17 2007-12-17 2016-04-22 147007 ENSG00000244045 OTTHUMG00000132498 uc002hba.4 AY074907 NM_152464 CCDS11228 Q8N511 26833330 MGI:2144113 RGD:1566425 TMEM199 616815 +HGNC:21075 TMEM200A transmembrane protein 200A protein-coding gene gene with protein product Approved 6q23.1 06q23.1 TTMC KIAA1913 KIAA1913 2003-11-21 2007-12-18 2007-12-18 2015-08-26 114801 ENSG00000164484 OTTHUMG00000015557 uc003qca.5 AB067500 NM_052913 CCDS5140 Q86VY9 15722956 MGI:1924470 RGD:1564024 TMEM200A +HGNC:33785 TMEM200B transmembrane protein 200B protein-coding gene gene with protein product Approved 1p35.3 01p35.3 TTMB 2007-12-18 2016-10-05 399474 ENSG00000253304 OTTHUMG00000003658 uc001brn.3 NM_001003682 CCDS30658 Q69YZ2 15722956 MGI:3646343 RGD:1585251 TMEM200B +HGNC:37208 TMEM200C transmembrane protein 200C protein-coding gene gene with protein product Approved 18p11.31 18p11.31 TTMA 2009-09-08 2009-09-08 645369 ENSG00000206432 OTTHUMG00000178423 uc060nbn.1 NM_001080209 CCDS45825 A6NKL6 15722956 MGI:3646281 RGD:1561734 TMEM200C +HGNC:33719 TMEM201 transmembrane protein 201 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "RP13-15M17.2|NET5|Ima1|SAMP1" spindle associated membrane protein 1 2007-12-18 2016-07-26 199953 ENSG00000188807 OTTHUMG00000057457 uc021ofy.2 NM_001010866 "CCDS30579|CCDS44055" Q5SNT2 "19494128|21327071" MGI:1196277 RGD:1583947 TMEM201 +HGNC:33733 TMEM202 transmembrane protein 202 protein-coding gene gene with protein product Approved 15q23-q24.1 15q23-q24.1 FLJ27523 2007-12-18 2016-10-11 338949 ENSG00000187806 OTTHUMG00000172716 uc002auq.4 NM_001080462 CCDS32287 A6NGA9 MGI:1921143 RGD:1585107 TMEM202 +HGNC:28217 TMEM203 transmembrane protein 203 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "MGC14327|HBEBP1" HBeAg-binding protein 1 2007-12-18 2014-11-19 94107 ENSG00000187713 OTTHUMG00000020985 uc004clv.4 BC009283 NM_053045 CCDS35185 Q969S6 12477932 MGI:2443597 RGD:1306304 TMEM203 616499 +HGNC:14158 TMEM204 transmembrane protein 204 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ20898|CLP24" claudin-like protein of 24 kDa C16orf30 chromosome 16 open reading frame 30 2000-12-21 2008-01-08 2008-01-08 2014-11-19 79652 ENSG00000131634 OTTHUMG00000176585 uc002cmc.4 NM_024600 CCDS42098 Q9BSN7 15206924 MGI:3039635 RGD:1359314 TMEM204 611002 +HGNC:29631 TMEM205 transmembrane protein 205 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "UNQ501|MBC3205" 2008-01-09 2014-11-19 374882 ENSG00000105518 OTTHUMG00000182021 uc060tql.1 AK127147 NM_198536 CCDS32909 Q6UW68 12975309 MGI:3045495 RGD:1563250 TMEM205 613771 +HGNC:25593 TMEM206 transmembrane protein 206 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 FLJ10874 C1orf75 chromosome 1 open reading frame 75 2005-05-19 2008-01-17 2008-01-17 2014-11-19 55248 ENSG00000065600 OTTHUMG00000036751 uc001hjc.5 AK024066 NM_018252 "CCDS1504|CCDS55687" Q9H813 12477932 MGI:1914200 RGD:1359339 TMEM206 +HGNC:33705 TMEM207 transmembrane protein 207 protein-coding gene gene with protein product Approved 3q28 03q28 2008-02-18 2015-08-26 131920 ENSG00000198398 OTTHUMG00000156213 uc003fsj.4 BC071780 NM_207316 CCDS3297 Q6UWW9 MGI:2685386 RGD:2322856 TMEM207 614786 +HGNC:25015 TMEM208 transmembrane protein 208 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 HSPC171 2008-02-22 2008-05-02 29100 ENSG00000168701 OTTHUMG00000173064 uc002esi.3 NM_014187 "CCDS45511|CCDS81996" Q9BTX3 11042152 MGI:1913570 RGD:1560953 TMEM208 +HGNC:21898 TMEM209 transmembrane protein 209 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 "FLJ14803|NET31" 2008-02-26 2015-08-26 84928 ENSG00000146842 OTTHUMG00000157653 uc003vpn.2 NM_032842 "CCDS47712|CCDS75661" Q96SK2 12958361 MGI:1919899 RGD:1309682 TMEM209 +HGNC:34059 TMEM210 transmembrane protein 210 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 2008-04-04 2015-08-26 100505993 ENSG00000185863 OTTHUMG00000020981 uc033dlm.2 XM_001715022 CCDS65197 A6NLX4 MGI:1925467 RGD:2318321 TMEM210 +HGNC:33725 TMEM211 transmembrane protein 211 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 bA9F11.1 2008-06-10 2014-11-19 255349 ENSG00000206069 OTTHUMG00000150790 uc003abk.2 NM_001001663 CCDS33624 Q6ICI0 MGI:2685700 RGD:1584759 TMEM211 +HGNC:34295 TMEM212 transmembrane protein 212 protein-coding gene gene with protein product Approved 3q26.31 03q26.31 FLJ23172 2008-06-10 2015-08-26 389177 ENSG00000186329 OTTHUMG00000156839 uc003fhw.2 XM_017006376 CCDS46958 A6NML5 MGI:2685410 RGD:1563109 TMEM212 +HGNC:41939 TMEM212-AS1 TMEM212 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q26.31 03q26.31 TMEM212 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100874219 ENSG00000234717 OTTHUMG00000156879 uc062pzb.1 NR_046852 +HGNC:41505 TMEM212-IT1 TMEM212 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3q26.31 03q26.31 TMEM212 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874359 ENSG00000235943 OTTHUMG00000156878 uc062pzc.1 +HGNC:27220 TMEM213 transmembrane protein 213 protein-coding gene gene with protein product Approved 7q34 07q34 2008-06-10 2015-08-26 155006 ENSG00000214128 OTTHUMG00000157182 uc010lna.5 NM_001085429 CCDS47722 A2RRL7 MGI:1924772 RGD:1588740 TMEM213 +HGNC:25983 TMEM214 transmembrane protein 214 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 FLJ20254 2008-06-10 2015-08-26 54867 ENSG00000119777 OTTHUMG00000151999 uc002ria.5 NM_017727 "CCDS42664|CCDS46242" Q6NUQ4 23661706 MGI:1916046 RGD:1311324 TMEM214 615301 +HGNC:33816 TMEM215 transmembrane protein 215 protein-coding gene gene with protein product Approved 9p21.1 09p21.1 2008-06-10 2015-08-26 401498 ENSG00000188133 OTTHUMG00000129521 uc003zri.5 NM_212558 CCDS6530 Q68D42 MGI:2444167 RGD:1589861 TMEM215 +HGNC:25018 TMEM216 transmembrane protein 216 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "MGC13379|HSPC244|JBTS2" "CORS2|MKS2" "cerebello-oculo-renal syndrome 2|Meckel syndrome, type 2" 2008-06-10 2016-10-12 51259 ENSG00000187049 OTTHUMG00000168146 uc010rlj.3 NM_016499 "CCDS53640|CCDS81570" Q9P0N5 "11042152|20036350|20512146" MGI:1920020 RGD:1304607 LRG_698|http://www.lrg-sequence.org/LRG/LRG_698 TMEM216 613277 221342 +HGNC:21238 TMEM217 transmembrane protein 217 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 dJ355M6.2 C6orf128 chromosome 6 open reading frame 128 2003-05-29 2008-07-07 2008-07-07 2016-10-05 221468 ENSG00000172738 OTTHUMG00000014618 uc010jwr.5 NM_145316 "CCDS4831|CCDS69102" Q8N7C4 MGI:3646280 RGD:1585322 TMEM217 +HGNC:27344 TMEM218 transmembrane protein 218 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 2008-06-10 2015-08-26 219854 ENSG00000150433 OTTHUMG00000165880 uc058itc.1 NM_001080546 CCDS31715 A2RU14 MGI:1913529 RGD:1311364 TMEM218 +HGNC:25201 TMEM219 transmembrane protein 219 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2008-06-10 2015-10-26 124446 ENSG00000149932 OTTHUMG00000177105 uc002duw.3 NM_001083613 CCDS42145 Q86XT9 20353938 MGI:1915992 RGD:1560566 TMEM219 +HGNC:33757 TMEM220 transmembrane protein 220 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 2008-06-10 2014-11-19 388335 ENSG00000187824 OTTHUMG00000178043 uc002gmx.4 NM_001004313 "CCDS32567|CCDS82074|CCDS82075" Q6QAJ8 MGI:2443691 RGD:1309576 TMEM220 +HGNC:44357 TMEM220-AS1 TMEM220 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17p13.1-p12 17p13.1-p12 2012-08-17 2016-10-11 101101775 ENSG00000263400 OTTHUMG00000178046 uc031qza.2 DA190285 NR_073455 +HGNC:21943 TMEM221 transmembrane protein 221 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 2008-06-11 2015-08-26 100130519 ENSG00000188051 OTTHUMG00000182858 uc021uqh.1 XM_011527603 CCDS54230 A6NGB7 MGI:3525074 RGD:2319149 TMEM221 +HGNC:25363 TMEM222 transmembrane protein 222 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 DKFZP564D0478 C1orf160 chromosome 1 open reading frame 160 2005-07-15 2008-07-07 2008-07-07 2014-11-19 84065 ENSG00000186501 OTTHUMG00000004410 uc001bnr.5 AL136683 NM_032125 CCDS297 Q9H0R3 11230166 MGI:1098568 RGD:1304793 TMEM222 +HGNC:28464 TMEM223 transmembrane protein 223 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 MGC3196 2008-12-08 2015-09-08 79064 ENSG00000168569 OTTHUMG00000167693 uc001nve.3 NM_001080501 CCDS44628 A0PJW6 RGD:1582829 TMEM223 +HGNC:32390 TMEM225 transmembrane protein 225 protein-coding gene gene with protein product Approved 11q24.1 11q24.1 "PMP22CD|PPP1R154" "PMP22 claudin domain containing|protein phosphatase 1, regulatory subunit 154" Protein phosphatase 1 regulatory subunits 694 2009-03-11 2014-06-13 338661 ENSG00000204300 OTTHUMG00000165959 uc001pzi.4 AY634366 NM_001013743 CCDS31697 Q6GV28 MGI:1922917 RGD:1562358 TMEM225 +HGNC:37279 TMEM229A transmembrane protein 229A protein-coding gene gene with protein product Approved 7q31.32 07q31.32 2009-09-22 2015-08-26 730130 ENSG00000234224 OTTHUMG00000154762 uc011kob.3 BC157828 NM_001136002 CCDS47694 B2RXF0 MGI:2442812 RGD:1590212 TMEM229A +HGNC:20130 TMEM229B transmembrane protein 229B protein-coding gene gene with protein product Approved 14q23.3-q24.1 14q23.3-q24.1 FLJ33387 C14orf83 chromosome 14 open reading frame 83 2002-12-18 2009-09-22 2009-09-22 2015-09-08 161145 ENSG00000198133 OTTHUMG00000171270 uc059cpm.1 AK090706 NM_182526 CCDS9783 Q8NBD8 MGI:2444389 RGD:1562622 TMEM229B +HGNC:15876 TMEM230 transmembrane protein 230 protein-coding gene gene with protein product Approved 20p13-p12.3 20p13-p12.3 HSPC274 C20orf30 chromosome 20 open reading frame 30 2001-06-21 2012-03-16 2012-03-16 2016-10-11 29058 ENSG00000089063 OTTHUMG00000031796 uc002wlm.4 AF161392 XM_017027834 "CCDS13086|CCDS33438|CCDS82597" Q96A57 27270108 MGI:1917862 RGD:1307399 617019 +HGNC:37234 TMEM231 transmembrane protein 231 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "FLJ22167|ALYE870|PRO1886|JBTS20|MKS11" 2009-10-02 2014-11-19 79583 ENSG00000205084 OTTHUMG00000177132 uc002fem.5 NM_001077416 CCDS45530 Q9H6L2 "23012439|23349226" MGI:2685024 RGD:1306153 TMEM231 614949 321364 +HGNC:37270 TMEM232 transmembrane protein 232 protein-coding gene gene with protein product Approved 5q22.1 05q22.1 FLJ43080 2009-10-02 2009-10-02 2016-04-25 642987 ENSG00000186952 OTTHUMG00000163297 uc011cvh.4 AK125070 NM_001039763 CCDS47253 C9JQI7 MGI:2685786 RGD:1559548 TMEM232 +HGNC:37219 TMEM233 transmembrane protein 233 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 IFITMD2 interferon induced transmembrane protein domain containing 2 2009-10-16 2009-10-16 387890 ENSG00000224982 OTTHUMG00000168944 uc010szd.2 NM_001136534 CCDS44995 B4DJY2 MGI:3651514 RGD:1597489 TMEM233 +HGNC:28837 TMEM234 transmembrane protein 234 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "RP4-622L5|dJ622L5.7|FLJ90779" C1orf91 chromosome 1 open reading frame 91 2005-05-27 2011-02-14 2011-02-14 2016-10-05 56063 ENSG00000160055 OTTHUMG00000005742 uc001buq.4 AY358586 NM_019118 CCDS356 Q8WY98 12477932 MGI:1924049 RGD:1583487 TMEM234 +HGNC:27563 TMEM235 transmembrane protein 235 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 2011-01-31 2011-02-18 2011-02-18 2015-09-08 283999 ENSG00000204278 OTTHUMG00000170345 uc021ued.2 BC042066 NM_001204211 "CCDS56048|CCDS56046|CCDS56047" A6NFC5 21689651 MGI:3651706 RGD:1591141 TMEM235 +HGNC:23473 TMEM236 transmembrane protein 236 protein-coding gene gene with protein product Approved 10p12.33 10p12.33 "bA16O1.2|bA162I21.2" "FAM23B|FAM23A" "family with sequence similarity 23, member B|family with sequence similarity 23, member A" 2004-05-27 2011-04-19 2011-04-19 2015-08-26 653567 ENSG00000148483 OTTHUMG00000017753 uc009xjx.5 XM_017016574 CCDS41492 Q5W0B7 MGI:1919309 RGD:1590637 TMEM236 +HGNC:14432 TMEM237 transmembrane protein 237 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 JBTS14 ALS2CR4 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 4 2001-01-26 2011-05-20 2011-05-20 2016-10-05 65062 ENSG00000155755 OTTHUMG00000154526 uc061rky.1 AB053301 NM_152388 "CCDS46489|CCDS46490" Q96Q45 "11586298|20375344" MGI:2138365 RGD:1306705 TMEM237 614423 286631 +HGNC:40042 TMEM238 transmembrane protein 238 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 2011-08-15 2015-08-26 388564 ENSG00000233493 OTTHUMG00000180795 uc002qku.4 NM_001190764 CCDS54323 C9JI98 MGI:1922935 RGD:1565210 TMEM238 +HGNC:40044 TMEM239 transmembrane protein 239 protein-coding gene gene with protein product Approved 20p13 20p13 2011-08-15 2015-08-26 100288797 ENSG00000198326 OTTHUMG00000031713 uc002wgx.3 XR_001754107 "CCDS54444|CCDS82595" Q8WW34 MGI:1914016 RGD:1592450 TMEM239 +HGNC:25186 TMEM240 transmembrane protein 240 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "C1orf70|SCA21" "chromosome 1 open reading frame 70|spinocerebellar ataxia 21" 2005-05-18 2011-11-25 2011-11-25 2015-08-26 339453 ENSG00000205090 OTTHUMG00000042193 uc057bfw.1 NM_001114748 CCDS44040 Q5SV17 "12402269|25070513" MGI:3648074 RGD:2318117 TMEM240 616101 412653 +HGNC:31723 TMEM241 transmembrane protein 241 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "MGC11386|FLJ44259" C18orf45 chromosome 18 open reading frame 45 2005-01-11 2011-11-25 2011-11-25 2015-09-08 85019 ENSG00000134490 OTTHUMG00000131771 uc002kuf.4 BC082984 NM_032933 CCDS11876 Q24JQ0 12477932 MGI:2442435 RGD:1590602 TMEM241 615430 +HGNC:17206 TMEM242 transmembrane protein 242 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 BM033 C6orf35 chromosome 6 open reading frame 35 2001-11-20 2011-11-25 2011-11-25 2015-08-26 729515 ENSG00000215712 OTTHUMG00000015893 uc003sih.5 AF217510 NM_018452 CCDS43519 Q9NWH2 MGI:1917794 RGD:1307262 TMEM242 +HGNC:21707 TMEM243 transmembrane protein 243 protein-coding gene gene with protein product Approved 7q21.12 07q21.12 "MGC4175|MM-TRAG" MDR1 and mitochondrial taxol resistance associated gene C7orf23 "chromosome 7 open reading frame 23|transmembrane protein 243, mitochondrial" 2003-07-14 2012-12-03 2015-11-26 2015-11-26 79161 ENSG00000135185 OTTHUMG00000130823 uc064fad.1 NM_024315 CCDS5602 Q9BU79 MGI:3606159 RGD:1562351 616993 +HGNC:21571 TMEM244 transmembrane protein 244 protein-coding gene gene with protein product Approved 6q22.33 06q22.33 bA174C7.4 C6orf191 chromosome 6 open reading frame 191 2003-11-26 2012-02-21 2012-02-21 2014-11-19 253582 ENSG00000203756 OTTHUMG00000015553 uc063rhh.1 NM_001010876 CCDS34536 Q5VVB8 +HGNC:1363 TMEM245 transmembrane protein 245 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 CG-2 C9orf5 chromosome 9 open reading frame 5 1999-06-02 2012-03-06 2012-03-06 2016-10-05 23731 ENSG00000106771 OTTHUMG00000020469 uc004bdt.5 AF153415 NM_032012 CCDS43858 Q9H330 10564813 MGI:2445107 RGD:1308958 +HGNC:28180 TMEM246 transmembrane protein 246 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 MGC12992 C9orf125 chromosome 9 open reading frame 125 2004-04-15 2012-04-02 2012-04-02 2014-11-19 84302 ENSG00000165152 OTTHUMG00000020381 uc064uvq.1 BC006115 NM_032342 CCDS6757 Q9BRR3 12477932 MGI:1914313 RGD:1307218 +HGNC:51191 TMEM246-AS1 TMEM246 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q31.1 09q31.1 2014-08-01 2014-08-01 101928470 ENSG00000225376 OTTHUMG00000020380 NR_121573 +HGNC:42967 TMEM247 transmembrane protein 247 protein-coding gene gene with protein product Approved 2p21 02p21 2012-04-11 2012-04-11 388946 ENSG00000187600 OTTHUMG00000153137 uc061ivl.2 NM_001145051 CCDS56117 A6NEH6 MGI:1925719 RGD:1588160 +HGNC:25476 TMEM248 transmembrane protein 248 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 "FLJ10099|FLJ13090" C7orf42 chromosome 7 open reading frame 42 2006-08-08 2012-05-30 2012-05-30 2014-11-19 55069 ENSG00000106609 OTTHUMG00000129553 uc003tvk.4 NM_017994 CCDS5536 Q9NWD8 12477932 MGI:1918917 RGD:1303319 +HGNC:44053 TMEM248P1 transmembrane protein 248 pseudogene 1 pseudogene pseudogene Approved 4q28.1 04q28.1 2012-05-30 2012-05-30 645841 ENSG00000249555 OTTHUMG00000161145 NG_022036 PGOHUM00000245693 +HGNC:44155 TMEM249 transmembrane protein 249 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 C8orfK29 2012-07-02 2015-09-08 340393 ENSG00000261587 OTTHUMG00000165167 uc011llb.4 NM_001252402 CCDS59117 Q2WGJ8 MGI:3647471 RGD:6496784 +HGNC:20218 TMEM251 transmembrane protein 251 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 DKFZP564F1123 C14orf109 chromosome 14 open reading frame 109 2003-01-15 2012-07-18 2012-07-18 2015-08-26 26175 ENSG00000153485 OTTHUMG00000171265 uc001ybk.4 NM_015676 "CCDS41980|CCDS45158" Q8N6I4 MGI:2443862 RGD:1566396 +HGNC:52396 TMEM251P1 transmembrane protein 251 pseudogene 1 pseudogene pseudogene Approved 5q14.3 05q14.3 2016-09-21 2016-09-21 100420909 ENSG00000249514 OTTHUMG00000162666 NG_024610 PGOHUM00000300666 +HGNC:28537 TMEM252 transmembrane protein 252 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 MGC34760 C9orf71 chromosome 9 open reading frame 71 2004-01-05 2012-07-19 2012-07-19 2016-10-05 169693 ENSG00000181778 OTTHUMG00000019967 uc004agt.4 BC029780 NM_153237 CCDS35040 Q8N6L7 12477932 MGI:3583948 RGD:1359349 +HGNC:32545 TMEM253 transmembrane protein 253 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "NCRNA00220|C14orf95|C14orf176" "non-protein coding RNA 220|chromosome 14 open reading frame 95|chromosome 14 open reading frame 176" 2006-03-09 2012-10-24 2012-10-24 2014-11-19 643382 ENSG00000232070 OTTHUMG00000171361 uc010tlo.2 XM_926711 CCDS53884 P0C7T8 MGI:3588246 RGD:1597322 +HGNC:25804 TMEM254 transmembrane protein 254 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "FLJ13263|bA369J21.6" C10orf57 chromosome 10 open reading frame 57 2004-05-04 2012-11-06 2012-11-06 2016-10-05 80195 ENSG00000133678 OTTHUMG00000018602 uc001kbl.5 BC022252 NM_025125 "CCDS7363|CCDS58086|CCDS58087|CCDS73157" Q8TBM7 14702039 "MGI:1196450|MGI:3710397|MGI:3711260" RGD:1305689 TMEM254 +HGNC:27340 TMEM254-AS1 TMEM254 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2012-11-06 2015-06-11 219347 ENSG00000230091 OTTHUMG00000018601 uc001kbi.5 NR_027428 +HGNC:26086 TMEM255A transmembrane protein 255A protein-coding gene gene with protein product Approved Xq24 Xq24 FLJ20716 FAM70A family with sequence similarity 70, member A 2005-08-05 2012-11-30 2012-11-30 2014-11-19 55026 ENSG00000125355 OTTHUMG00000022298 uc010nqo.4 BC047054 NM_017938 "CCDS14597|CCDS43986|CCDS48157" Q5JRV8 12477932 MGI:3045722 RGD:727788 +HGNC:28297 TMEM255B transmembrane protein 255B protein-coding gene gene with protein product Approved 13q34 13q34 MGC20579 FAM70B family with sequence similarity 70, member B 2005-08-05 2012-11-30 2012-11-30 2015-09-08 348013 ENSG00000184497 OTTHUMG00000017398 uc001vuh.4 BC018995 NM_182614 CCDS45071 Q8WV15 12477932 MGI:2685533 RGD:1566042 +HGNC:28618 TMEM256 transmembrane protein 256 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 MGC40107 C17orf61 chromosome 17 open reading frame 61 2005-12-16 2012-12-03 2012-12-03 2014-11-18 254863 ENSG00000205544 OTTHUMG00000132900 uc002ggs.4 BC030270 NM_152766 CCDS11102 Q8N2U0 12477932 MGI:1916436 RGD:1563438 +HGNC:49186 TMEM256-PLSCR3 TMEM256-PLSCR3 readthrough (NMD candidate) other readthrough Approved 17p13.1 17p13.1 2013-09-25 2015-07-31 100529211 ENSG00000187838 OTTHUMG00000178150 NR_037719 RGD:1307016 +HGNC:45087 TMEM256P1 transmembrane protein 256 pseudogene 1 pseudogene pseudogene Approved 10q22.1 10q22.1 2013-02-08 2013-02-08 645269 ENSG00000233197 OTTHUMG00000018382 NG_028106 PGOHUM00000238517 +HGNC:45088 TMEM256P2 transmembrane protein 256 pseudogene 2 pseudogene pseudogene Approved 2q36.1 02q36.1 2013-02-08 2013-02-08 106479054 ENSG00000226726 OTTHUMG00000154498 NG_045177 PGOHUM00000241116 +HGNC:2562 TMEM257 transmembrane protein 257 protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 CXorf1 chromosome X open reading frame 1 1999-02-15 2012-12-03 2012-12-03 2012-12-03 9142 ENSG00000221870 OTTHUMG00000159605 uc004fch.4 Y08902 NM_004709 CCDS14681 O96002 9881668 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TMEM257 300565 +HGNC:1164 TMEM258 transmembrane protein 258 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 C11orf10 chromosome 11 open reading frame 10 1998-07-30 2012-12-03 2012-12-03 2014-11-18 746 ENSG00000134825 OTTHUMG00000168172 uc001nsf.4 NM_014206 CCDS8009 P61165 12427278 MGI:1916288 RGD:1560328 +HGNC:17039 TMEM259 transmembrane protein 259 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MGC4022|ASBABP1|MBRL" "membralin|aspecific BCL2 ARE-binding protein 1" C19orf6 chromosome 19 open reading frame 6 2003-05-02 2013-02-06 2013-02-06 2014-11-18 91304 ENSG00000182087 OTTHUMG00000181905 uc002lqs.2 BC008957 NM_033420 "CCDS12052|CCDS32862" Q4ZIN3 "12638133|16084606" MGI:2177957 RGD:1311136 611011 +HGNC:20185 TMEM260 transmembrane protein 260 protein-coding gene gene with protein product Approved 14q22.3 14q22.3 FLJ20392 C14orf101 chromosome 14 open reading frame 101 2002-12-20 2013-03-08 2013-03-08 2016-10-05 54916 ENSG00000070269 OTTHUMG00000152337 uc001xcm.4 AK000399 NM_017799 CCDS9727 Q9NX78 MGI:2443219 RGD:1562018 +HGNC:30536 TMEM261 transmembrane protein 261 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 MGC4730 C9orf123 chromosome 9 open reading frame 123 2004-04-15 2013-09-11 2013-09-11 2015-08-26 90871 ENSG00000137038 OTTHUMG00000019539 BC009510 NM_033428 CCDS34989 Q96GE9 21666724 MGI:1914178 RGD:1309148 +HGNC:49128 TMEM261P1 transmembrane protein 261 pseudogene 1 pseudogene pseudogene Approved 15q11.2 15q11.2 2013-09-11 2013-09-11 100289059 ENSG00000270814 OTTHUMG00000184800 NG_027714 PGOHUM00000246678 +HGNC:49389 TMEM262 transmembrane protein 262 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 2013-11-07 2013-11-07 100130348 ENSG00000187066 OTTHUMG00000165598 NM_001282448 CCDS60845 E9PQX1 MGI:3690536 RGD:2318452 +HGNC:28281 TMEM263 transmembrane protein 263 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 MGC17943 C12orf23 chromosome 12 open reading frame 23 2005-12-22 2014-03-19 2014-03-19 2014-11-19 90488 ENSG00000151135 OTTHUMG00000170014 NM_152261 CCDS9110 Q8WUH6 12477932 MGI:2143652 RGD:1563325 +HGNC:51241 TMEM265 transmembrane protein 265 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2015-01-20 2015-01-22 100862671 ENSG00000281991 OTTHUMG00000191414 NM_001256829 CCDS73870 A0A087WTH1 MGI:5613213 RGD:7523242 +HGNC:26763 TMEM266 transmembrane protein 266 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 FLJ38190 C15orf27 chromosome 15 open reading frame 27 2004-06-29 2015-10-06 2015-10-06 2016-10-05 123591 ENSG00000169758 OTTHUMG00000142918 AK095509 NM_152335 CCDS10289 Q2M3C6 "14702039|22020278" MGI:2142980 RGD:1562084 +HGNC:26139 TMEM267 transmembrane protein 267 protein-coding gene gene with protein product Approved 5p12 05p12 FLJ21657 C5orf28 chromosome 5 open reading frame 28 2006-08-11 2016-05-17 2016-05-17 2016-05-17 64417 ENSG00000151881 OTTHUMG00000131150 uc003jnx.4 AK025310 NM_022483 CCDS3945 Q0VDI3 12477932 MGI:3648543 RGD:1562550 +HGNC:24513 TMEM268 transmembrane protein 268 protein-coding gene gene with protein product Approved 9q32 09q32 "DKFZp547P234|FLJ38045" C9orf91 chromosome 9 open reading frame 91 2004-02-24 2016-06-20 2016-06-20 2016-10-05 203197 ENSG00000157693 OTTHUMG00000020541 uc004bjd.5 BX649023 NM_153045 "CCDS6808|CCDS83405" Q5VZI3 14702039 MGI:1913920 RGD:1304595 +HGNC:11870 TMF1 TATA element modulatory factor 1 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "ARA160|TMF" 1992-11-25 2014-11-19 7110 ENSG00000144747 OTTHUMG00000158771 uc003dnn.4 NM_007114 CCDS43105 P82094 1409643 MGI:2684999 RGD:620551 TMF1 601126 +HGNC:51353 TMF1P1 TATA element modulatory factor 1 pseudogene 1 pseudogene pseudogene Approved 16p13.12 16p13.12 2014-10-14 2014-10-14 106480320 ENSG00000262235 OTTHUMG00000177336 NG_044428 PGOHUM00000293708 +HGNC:30800 TMIE transmembrane inner ear protein-coding gene gene with protein product Approved 3p21.31 03p21.31 DFNB6 deafness, autosomal recessive 6 2004-05-19 2004-05-19 2016-10-05 259236 ENSG00000181585 OTTHUMG00000149909 uc010hjk.2 AY081842 NM_147196 CCDS43081 Q8NEW7 "12140191|12145746" MGI:2159400 RGD:1562523 CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=TMIE TMIE 607237 120145 +HGNC:32431 TMIGD1 transmembrane and immunoglobulin domain containing 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 UNQ9372 TMIGD "I-set domain containing|Immunoglobulin like domain containing" "593|594" 2005-12-19 2006-07-05 2006-07-05 2016-08-09 388364 ENSG00000182271 OTTHUMG00000179757 uc002hfa.1 AY358153 NM_206832 "CCDS32605|CCDS82099" Q6UXZ0 "12975309|26342724" MGI:1913851 RGD:1307444 TMIGD1 +HGNC:28324 TMIGD2 transmembrane and immunoglobulin domain containing 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MGC23244|CD28H|IGPR-1" "CD28 homologue|immunoglobulin-containing and proline-rich receptor-1" Immunoglobulin like domain containing 594 2006-07-05 2006-07-05 2015-08-21 126259 ENSG00000167664 OTTHUMG00000181880 uc002lzx.3 BC015655 NM_144615 "CCDS12126|CCDS59334|CCDS77217" Q96BF3 "22419821|23784006" TMIGD2 614715 +HGNC:51375 TMIGD3 transmembrane and immunoglobulin domain containing 3 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 AD026 2014-11-06 2015-09-08 57413 ENSG00000121933 OTTHUMG00000190810 NM_001081976 P0DMS9 MGI:5604098 RGD:2324712 +HGNC:18308 TMLHE trimethyllysine hydroxylase, epsilon protein-coding gene gene with protein product Approved Xq28 Xq28 "TMLH|FLJ10727|BBOX2|XAP130" butyrobetaine (gamma), 2-oxoglutarate dioxygenase (gamma-butyrobetaine hydroxylase) 2 2002-04-26 2014-11-19 55217 ENSG00000185973 OTTHUMG00000022674 uc004fnn.5 "AF373407|X97513" NM_018196 "CCDS14768|CCDS55547" Q9NVH6 "8908511|11431483" MGI:2180203 RGD:620629 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TMLHE TMLHE 300777 +HGNC:44261 TMLHE-AS1 TMLHE antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq28 Xq28 TMLHE antisense RNA 1 (non-protein coding) 2012-08-01 2012-08-15 2012-10-12 100507404 ENSG00000224533 OTTHUMG00000022672 uc004fnl.3 BC042086 NR_039991 +HGNC:11871 TMOD1 tropomodulin 1 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 ETMOD "D9S57E|TMOD" Tropomodulins 1140 1991-05-21 2003-03-21 2016-10-05 7111 ENSG00000136842 OTTHUMG00000020325 uc004axl.3 NM_003275 CCDS6726 P28289 "1370827|8661028" MGI:98775 RGD:3874 TMOD1 190930 +HGNC:11872 TMOD2 tropomodulin 2 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 NTMOD neuronal tropomodulin Tropomodulins 1140 2000-02-16 2015-11-16 2015-11-16 29767 ENSG00000128872 OTTHUMG00000131805 uc002abk.4 AF177169 XM_017022089 "CCDS10144|CCDS45260" Q9NZR1 10662549 MGI:1355335 RGD:61948 TMOD2 602928 +HGNC:11873 TMOD3 tropomodulin 3 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 UTMOD ubiquitous tropomodulin Tropomodulins 1140 2000-02-16 2015-11-16 2015-11-16 29766 ENSG00000138594 OTTHUMG00000131803 uc002abn.4 AF177171 XM_017022087 CCDS10145 Q9NYL9 10662549 MGI:1355315 RGD:1311030 TMOD3 605112 +HGNC:11874 TMOD4 tropomodulin 4 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 Sk-Tmod "actin-capping protein|skeletal tropomodulin" tropomodulin 4 (muscle) Tropomodulins 1140 2000-02-16 2015-11-16 2016-10-05 29765 ENSG00000163157 OTTHUMG00000012350 uc001exc.5 AF177173 XM_017001089 CCDS988 Q9NZQ9 "10662549|10497209" MGI:1355285 RGD:1308940 TMOD4 605834 +HGNC:11875 TMPO thymopoietin protein-coding gene gene with protein product Approved 12q23.1 12q23.1 "TP|LAP2|LEMD4" LEM domain containing 4 LEM domain containing 1087 1994-11-08 2016-10-12 7112 ENSG00000120802 OTTHUMG00000170210 uc001tfh.3 NM_003276 "CCDS9064|CCDS31879|CCDS31880|CCDS76589" "P42166|P42167" 7517549 MGI:106920 RGD:3875 LRG_443|http://www.lrg-sequence.org/LRG/LRG_443 TMPO 188380 159042 +HGNC:44158 TMPO-AS1 TMPO antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q23.1 12q23.1 TMPO antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100128191 ENSG00000257167 OTTHUMG00000170209 uc001tfg.4 NR_027157 +HGNC:21364 TMPOP1 thymopoietin pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 Em:AB014080.3 TMPOL1 thymopoietin-like 1 2003-11-27 2004-03-22 2004-03-22 2014-11-19 100129772 ENSG00000229068 OTTHUMG00000031218 NG_027533 PGOHUM00000243574 +HGNC:50860 TMPOP2 thymopoietin pseudogene 2 pseudogene pseudogene Approved 16q23.1 16q23.1 lncRNA-EBIC EZH2-binding lncRNA in cervical cancer thymopoietin pseudogene 2 (functional) Transcribed pseudogenes with published function 859 2014-07-06 2016-01-29 2016-01-29 100533619 ENSG00000262904 OTTHUMG00000177355 NG_028880 25007342 PGOHUM00000249173 +HGNC:33865 TMPPE transmembrane protein with metallophosphoesterase domain protein-coding gene gene with protein product Approved 3p22.3 03p22.3 FLJ45032 2009-02-24 2009-02-24 2015-08-26 643853 ENSG00000188167 OTTHUMG00000155779 uc003cfk.3 AK126979 NM_001039770 "CCDS33732|CCDS46786" Q6ZT21 MGI:5317335 RGD:7696429 TMPPE +HGNC:11876 TMPRSS2 transmembrane protease, serine 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 PRSS10 Proteases, serine 738 1997-05-09 2014-11-19 7113 ENSG00000184012 OTTHUMG00000086762 uc002yzj.4 U75329 XM_011529731 "CCDS33564|CCDS54486" O15393 9325052 MGI:1354381 RGD:620766 TMPRSS2 602060 S01.247 objectId:2421 +HGNC:11877 TMPRSS3 transmembrane protease, serine 3 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "DFNB10|DFNB8" Proteases, serine 738 2000-05-17 2015-11-02 64699 ENSG00000160183 OTTHUMG00000086796 uc062akz.1 AF201380 NM_032405 "CCDS13686|CCDS42939|CCDS58790" P57727 "11462234|11907649" MGI:2155445 RGD:1310135 "Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=TMPRSS3" TMPRSS3 605511 120148 S01.079 +HGNC:11878 TMPRSS4 transmembrane protease, serine 4 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "TMPRSS3|MT-SP2" "transmembrane serine protease 3|membrane-type serine protease 2|type II membrane serine protease" Proteases, serine 738 2000-08-11 2014-11-19 56649 ENSG00000137648 OTTHUMG00000164122 uc058hvt.1 AF179224 NM_019894 "CCDS31684|CCDS44743|CCDS53716|CCDS53717|CCDS76482" Q9NRS4 10825129 MGI:2384877 RGD:1305033 TMPRSS4 606565 364667 S01.034 +HGNC:44179 TMPRSS4-AS1 TMPRSS4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11q23.3 11q23.3 TMPRSS4 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100526771 ENSG00000255274 OTTHUMG00000166993 uc001pry.1 NR_038318 RGD:7587328 +HGNC:14908 TMPRSS5 transmembrane protease, serine 5 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 "MGC141886|MGC148044" spinesin Proteases, serine 738 2001-04-05 2008-07-31 2016-10-05 80975 ENSG00000166682 OTTHUMG00000168186 uc001poc.6 AB028140 NM_030770 "CCDS44735|CCDS73390|CCDS73391|CCDS73392|CCDS73393" Q9H3S3 MGI:1933407 RGD:628625 TMPRSS5 606751 S01.313 +HGNC:16517 TMPRSS6 transmembrane protease, serine 6 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 FLJ30744 Proteases, serine 738 2003-12-17 2016-10-05 164656 ENSG00000187045 OTTHUMG00000150541 uc003aqs.3 AY055383 NM_153609 "CCDS13941|CCDS74856|CCDS74857" Q8IU80 MGI:1919003 RGD:1307138 TMPRSS6 609862 139780 S01.308 objectId:2422 +HGNC:30846 TMPRSS7 transmembrane protease, serine 7 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 type II transmembrane serine protease 7 Proteases, serine 738 2003-12-17 2004-03-16 2014-11-19 344805 ENSG00000176040 OTTHUMG00000157148 uc010hqb.3 BN000125 XM_293599 CCDS43129 Q7RTY8 12838346 MGI:2686594 RGD:1304655 TMPRSS7 S01.072 +HGNC:30079 TMPRSS9 transmembrane protease, serine 9 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 polyserase 1 Proteases, serine 738 2004-04-07 2015-08-26 360200 ENSG00000178297 OTTHUMG00000180431 uc010xgx.3 AJ488946 NM_182973 CCDS12088 Q7Z410 12886014 MGI:3612246 RGD:1309581 TMPRSS9 610477 S01.969 +HGNC:27954 TMPRSS11A transmembrane protease, serine 11A protein-coding gene gene with protein product Approved 4q13.2 04q13.2 ECRG1 Proteases, serine 738 2005-03-11 2014-11-19 339967 ENSG00000187054 OTTHUMG00000129303 uc003hdr.2 AF071882 NM_182606 "CCDS3519|CCDS47065" Q6ZMR5 15328353 MGI:2684853 RGD:1596322 TMPRSS11A 611704 S01.292 +HGNC:25398 TMPRSS11B transmembrane protease, serine 11B protein-coding gene gene with protein product Approved 4q13.2 04q13.2 Proteases, serine 738 2005-03-11 2014-11-19 132724 ENSG00000185873 OTTHUMG00000129301 uc003hdw.5 BX537945 NM_182502 CCDS3521 Q86T26 MGI:2442893 RGD:1303278 TMPRSS11B S01.365 +HGNC:37262 TMPRSS11BNL TMPRSS11B N-terminal like, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 FLJ41562 "TMPRSS11B N terminal-like|TMPRSS11B N-terminal like" 2010-01-19 2014-05-08 2015-02-02 401136 ENSG00000250026 OTTHUMG00000160802 NM_001129907 TMPRSS11BNL +HGNC:31934 TMPRSS11CP transmembrane protease, serine 11C, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 Proteases, serine 738 2010-03-12 2014-11-19 100381178 ENSG00000232398 OTTHUMG00000154681 NG_016735 "15328353|18215125" MGI:3521861 RGD:1302967 +HGNC:24059 TMPRSS11D transmembrane protease, serine 11D protein-coding gene gene with protein product Approved 4q13.2 04q13.2 airway trypsin like protease Proteases, serine 738 2005-03-11 2014-11-19 9407 ENSG00000153802 OTTHUMG00000129300 uc003hdq.4 AB002134 NM_004262 CCDS3518 O60235 "9565616|9070615" MGI:2385221 RGD:620654 TMPRSS11D 605369 S01.047 objectId:2420 +HGNC:24465 TMPRSS11E transmembrane protease, serine 11E protein-coding gene gene with protein product Approved 4q13.2 04q13.2 DESC1 TMPRSS11E2 transmembrane protease, serine 11E2 Proteases, serine 738 2005-03-11 2014-11-19 28983 ENSG00000087128 OTTHUMG00000160438 uc003hdz.4 AF064819 NM_014058 CCDS33993 Q9UL52 15328353 MGI:3513175 RGD:1561698 TMPRSS11E 610399 S01.021 +HGNC:29994 TMPRSS11F transmembrane protease, serine 11F protein-coding gene gene with protein product Approved 4q13.2 04q13.2 FLJ16046 Proteases, serine 738 2005-03-11 2014-11-18 389208 ENSG00000198092 OTTHUMG00000129307 uc003hdt.2 AK122625 NM_207407 CCDS3520 Q6ZWK6 MGI:2442348 RGD:1560675 TMPRSS11F S01.321 +HGNC:42983 TMPRSS11GP transmembrane protease, serine 11G, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 2011-09-13 2011-09-13 644759 ENSG00000229009 OTTHUMG00000154737 NR_033737 MGI:2444058 PGOHUM00000245555 +HGNC:28779 TMPRSS12 transmembrane protease, serine 12 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "MGC57341|CT151" "transmembrane protease, serine 12|transmembrane (C-terminal) protease, serine 12" Proteases, serine 738 2005-02-24 2016-03-14 2016-03-14 283471 ENSG00000186452 OTTHUMG00000169483 uc001rwx.5 BC048112 NM_182559 CCDS44881 Q86WS5 MGI:1922252 RGD:2323781 TMPRSS12 S01.291 +HGNC:29808 TMPRSS13 transmembrane protease, serine 13 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 MSPL TMPRSS11 transmembrane protease, serine 11 Proteases, serine 738 2005-02-24 2005-03-12 2005-03-11 2016-10-05 84000 ENSG00000137747 OTTHUMG00000166992 uc001prs.3 AB048796 NM_032046 "CCDS41721|CCDS55788|CCDS55789|CCDS58185" Q9BYE2 11267681 MGI:2682935 RGD:1310872 TMPRSS13 610050 S01.087 +HGNC:9490 TMPRSS15 transmembrane protease, serine 15 protein-coding gene gene with protein product Approved 21q21.1 21q21.1 "ENTK|MGC133046" "proenterokinase|enteropeptidase" PRSS7 protease, serine, 7 (enterokinase) Proteases, serine 738 1995-08-14 2010-04-21 2010-04-21 2016-10-05 5651 ENSG00000154646 OTTHUMG00000074518 uc002ykw.4 NM_002772 CCDS13571 P98073 8052624 MGI:1197523 RGD:1311046 TMPRSS15 606635 173222 S01.156 +HGNC:11881 TMSB4X thymosin beta 4, X-linked protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 TB4X TMSB4 thymosin, beta 4, X chromosome 1994-09-06 2008-02-25 2015-09-08 7114 ENSG00000205542 OTTHUMG00000021144 uc004cvf.4 NM_021109 CCDS35202 P62328 "2677145|9381176" MGI:99510 RGD:621622 TMSB4X 300159 +HGNC:11883 TMSB4XP1 thymosin beta 4, X-linked pseudogene 1 pseudogene pseudogene Approved 1p34.2 01p34.2 TMSL1 "thymosin-like 1|thymosin-like 1 (pseudogene)" 1990-06-18 2010-06-23 2010-06-23 2014-11-18 7115 ENSG00000236876 OTTHUMG00000007433 BC101199 NG_004714 +HGNC:11884 TMSB4XP2 thymosin beta 4, X-linked pseudogene 2 pseudogene pseudogene Approved 2p25.3 02p25.3 TMSL2 "thymosin-like 2|thymosin-like 2 (pseudogene)" 1990-06-18 2010-06-23 2010-06-23 2014-11-19 7116 ENSG00000188765 OTTHUMG00000151484 NG_004719 +HGNC:38587 TMSB4XP3 thymosin beta 4, X-linked pseudogene 3 pseudogene pseudogene Approved 7p14.3 07p14.3 2010-06-23 2014-11-19 100873877 ENSG00000223437 OTTHUMG00000152734 NG_032206 PGOHUM00000262015 +HGNC:11886 TMSB4XP4 thymosin beta 4, X-linked pseudogene 4 pseudogene pseudogene Approved 9q34.11 09q34.11 TMSL4 "thymosin-like 4|thymosin-like 4 (pseudogene)" 1990-06-18 2012-03-06 2012-03-06 2014-11-19 7118 ENSG00000223551 OTTHUMG00000020739 NG_004715 TMSB4XP4 +HGNC:11887 TMSB4XP5 thymosin beta 4, X-linked pseudogene 5 pseudogene pseudogene Approved 11q12.3 11q12.3 TMSL5 "thymosin-like 5|thymosin-like 5 (pseudogene)" 1990-06-18 2012-03-06 2012-03-06 2012-03-06 7119 NG_002996 +HGNC:11888 TMSB4XP6 thymosin beta 4, X-linked pseudogene 6 pseudogene pseudogene Approved 20q13.13 20q13.13 dJ1071L10.1 "TMSB4L|TMSL6" "thymosin, beta 4-like|thymosin-like 6|thymosin-like 6 (pseudogene)" 1990-06-18 2012-03-06 2012-03-06 2012-03-06 7120 ENSG00000230043 OTTHUMG00000074021 BC112282 NG_006508 2004759 +HGNC:11889 TMSB4XP7 thymosin beta 4, X-linked pseudogene 7 pseudogene pseudogene Approved Xq23 Xq23 TMSL7 thymosin-like 7 (pseudogene) 1990-06-18 2012-03-06 2012-03-06 2014-11-19 7121 NG_002997 2004759 +HGNC:11885 TMSB4XP8 thymosin beta 4, X-linked pseudogene 8 pseudogene pseudogene Approved 4q22.1 04q22.1 TMSL3 thymosin-like 3 1990-06-18 2012-03-06 2012-03-06 2014-11-18 7117 ENSG00000187653 OTTHUMG00000130951 NG_028923 2004759 +HGNC:11882 TMSB4Y thymosin beta 4, Y-linked protein-coding gene gene with protein product Approved Yq11.221 Yq11.221 TB4Y thymosin, beta 4, Y chromosome Minor histocompatibility antigens 870 1999-02-03 2008-02-25 2015-09-08 9087 ENSG00000154620 OTTHUMG00000036366 uc004ftb.4 AF000989 NM_004202 CCDS14786 O14604 9381176 TMSB4Y 400017 +HGNC:11879 TMSB10 thymosin beta 10 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 TB10 1999-02-15 2008-02-25 2015-09-08 9168 ENSG00000034510 OTTHUMG00000130027 uc002sow.2 NM_021103 CCDS1970 P63313 "3365256|10487837" MGI:109146 RGD:62022 TMSB10 188399 +HGNC:41949 TMSB10P1 thymosin beta 10 pseudogene 1 pseudogene pseudogene Approved 2q37.2 02q37.2 2011-05-20 2014-11-18 100506723 ENSG00000228499 OTTHUMG00000153123 NG_029007 PGOHUM00000240566 +HGNC:41950 TMSB10P2 thymosin beta 10 pseudogene 2 pseudogene pseudogene Approved Xp22.13 Xp22.13 2011-05-20 2011-05-20 100873786 ENSG00000235211 OTTHUMG00000021213 NG_032381 PGOHUM00000241657 +HGNC:30744 TMSB15A thymosin beta 15a protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 TMSNB TMSL8 thymosin-like 8 2005-02-21 2009-01-12 2009-01-12 2016-10-05 11013 ENSG00000158164 OTTHUMG00000022054 uc004eje.4 D82345 NM_021992 CCDS14498 P0CG34 "9039501|17567946" MGI:1925728 RGD:708373 TMSB15A 300939 +HGNC:28612 TMSB15B thymosin beta 15B protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 MGC39900 2009-01-12 2015-09-11 286527 ENSG00000158427 OTTHUMG00000022117 uc065anb.1 NM_194324 CCDS59172 P0CG35 17567946 "MGI:3843059|MGI:3843061" TMSB15B +HGNC:24099 TMTC1 transmembrane and tetratricopeptide repeat containing 1 protein-coding gene gene with protein product Approved 12p11.22 12p11.22 "ARG99|OLF|FLJ31400|FLJ41625" Tetratricopeptide repeat domain containing 769 2006-01-06 2006-01-06 2014-11-19 83857 ENSG00000133687 OTTHUMG00000169324 uc001rjb.4 NM_031920 "CCDS8718|CCDS53772" Q8IUR5 24764305 MGI:3039590 RGD:1564868 TMTC1 615855 +HGNC:25440 TMTC2 transmembrane and tetratricopeptide repeat containing 2 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 DKFZp762A217 Tetratricopeptide repeat domain containing 769 2006-01-06 2014-11-18 160335 ENSG00000179104 OTTHUMG00000169736 uc001szt.5 AK074634 NM_152588 "CCDS9025|CCDS81717" Q8N394 24764305 MGI:1914057 RGD:1309848 TMTC2 615856 +HGNC:26899 TMTC3 transmembrane and tetratricopeptide repeat containing 3 protein-coding gene gene with protein product Approved 12q21.32 12q21.32 "FLJ90492|SMILE" Tetratricopeptide repeat domain containing 769 2006-01-06 2014-11-19 160418 ENSG00000139324 OTTHUMG00000169887 uc001tau.3 NM_181783 CCDS9032 Q6ZXV5 MGI:3036255 RGD:1306351 TMTC3 +HGNC:25904 TMTC4 transmembrane and tetratricopeptide repeat containing 4 protein-coding gene gene with protein product Approved 13q32.3 13q32.3 "FLJ14624|FLJ22153" Tetratricopeptide repeat domain containing 769 2006-01-06 2006-01-06 2014-11-18 84899 ENSG00000125247 OTTHUMG00000017289 uc001vou.5 NM_032813 "CCDS9497|CCDS41904|CCDS66575" Q5T4D3 MGI:1921050 RGD:1560183 TMTC4 +HGNC:21709 TMUB1 transmembrane and ubiquitin like domain containing 1 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 SB144 C7orf21 "chromosome 7 open reading frame 21|transmembrane and ubiquitin-like domain containing 1" 2003-07-14 2006-06-27 2016-03-15 2016-03-15 83590 ENSG00000164897 OTTHUMG00000158621 uc003wjd.4 BC000936 NM_031434 CCDS5920 Q9BVT8 MGI:1923764 RGD:735120 TMUB1 614792 +HGNC:28459 TMUB2 transmembrane and ubiquitin like domain containing 2 protein-coding gene gene with protein product Approved 17q21 17q21 MGC3123 transmembrane and ubiquitin-like domain containing 2 2006-06-27 2016-03-15 2016-03-15 79089 ENSG00000168591 OTTHUMG00000181811 uc002ifp.4 NM_177441 "CCDS11479|CCDS54134|CCDS82137" Q71RG4 "8619474|9110174" MGI:1919303 RGD:1304758 TMUB2 +HGNC:15487 TMX1 thioredoxin related transmembrane protein 1 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "TMX|PDIA11" "thioredoxin-related transmembrane protein|protein disulfide isomerase family A, member 11" "TXNDC|TXNDC1" "thioredoxin domain-containing|thioredoxin domain containing|thioredoxin domain containing 1|thioredoxin-related transmembrane protein 1" Protein disulfide isomerases 692 2001-04-23 2009-02-23 2016-02-01 2016-02-01 81542 ENSG00000139921 OTTHUMG00000171003 uc001wza.5 AB048246 NM_030755 CCDS41953 Q9H3N1 11152479 MGI:1919986 RGD:1308455 TMX1 610527 +HGNC:30739 TMX2 thioredoxin related transmembrane protein 2 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 PDIA12 protein disulfide isomerase family A, member 12 TXNDC14 "thioredoxin domain containing 14|thioredoxin-related transmembrane protein 2" Protein disulfide isomerases 692 2005-10-04 2009-02-23 2016-02-01 2016-02-01 51075 ENSG00000213593 OTTHUMG00000167200 uc001nlc.3 AF132965 NM_015959 "CCDS7967|CCDS44601" Q9Y320 12670024 MGI:1914208 RGD:1359456 TMX2 616715 +HGNC:41992 TMX2-CTNND1 TMX2-CTNND1 readthrough (NMD candidate) other readthrough Approved 11q12.1 11q12.1 2011-05-31 2013-05-09 2014-11-19 100528016 ENSG00000254462 OTTHUMG00000167384 uc058boc.1 NR_037646.1 +HGNC:49916 TMX2P1 thioredoxin related transmembrane protein 2 pseudogene 1 pseudogene pseudogene Approved 9p13.2 09p13.2 thioredoxin-related transmembrane protein 2 pseudogene 1 2014-03-21 2016-02-01 2016-02-01 100233198 ENSG00000213839 OTTHUMG00000019929 NG_009211 PGOHUM00000260500 +HGNC:24718 TMX3 thioredoxin related transmembrane protein 3 protein-coding gene gene with protein product Approved 18q22 18q22 "FLJ20793|KIAA1830|PDIA13" protein disulfide isomerase family A, member 13 TXNDC10 "thioredoxin domain containing 10|thioredoxin-related transmembrane protein 3" Protein disulfide isomerases 692 2005-01-06 2009-02-23 2016-02-01 2016-02-01 54495 ENSG00000166479 OTTHUMG00000172713 uc002lkf.4 BX647846 NM_019022 CCDS32840 Q96JJ7 15623505 MGI:2442418 RGD:1592777 TMX3 616102 +HGNC:25237 TMX4 thioredoxin related transmembrane protein 4 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "DJ971N18.2|KIAA1162|PDIA14" protein disulfide isomerase family A, member 14 TXNDC13 "thioredoxin domain containing 13|thioredoxin-related transmembrane protein 4" Protein disulfide isomerases 692 2005-09-13 2009-02-23 2016-02-01 2016-10-05 56255 ENSG00000125827 OTTHUMG00000031843 uc002wmx.2 NM_021156 CCDS13101 Q9H1E5 20056998 MGI:106558 RGD:1305146 TMX4 616766 +HGNC:5318 TNC tenascin C protein-coding gene gene with protein product Approved 9q33.1 09q33.1 "TN|MGC167029" hexabrachion (tenascin) "HXB|DFNA56" "hexabrachion (tenascin C, cytotactin)|deafness, autosomal dominant 56" "Fibrinogen C domain containing|Fibronectin type III domain containing" "554|555" 1989-09-08 2002-06-07 2008-07-31 2014-11-19 3371 ENSG00000041982 OTTHUMG00000021010 uc004bjj.6 NM_002160 CCDS6811 P24821 "1704365|1707164|23936043" MGI:101922 RGD:621057 TNC 187380 391333 +HGNC:11892 TNF tumor necrosis factor protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "TNFSF2|DIF|TNF-alpha" TNF superfamily, member 2 TNFA tumor necrosis factor (TNF superfamily, member 2) Tumor necrosis factor superfamily 781 1986-01-01 2010-05-04 2016-10-05 7124 ENSG00000232810 OTTHUMG00000031194 uc011fee.4 X02910 NM_000594 CCDS4702 P01375 "2413547|6392892" MGI:104798 RGD:3876 TNF 191160 139204 objectId:2635 +HGNC:11894 TNFAIP1 TNF alpha induced protein 1 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "B61|B12|MGC2317|BTBD34" EDP1 tumor necrosis factor, alpha-induced protein 1 (endothelial) BTB domain containing 861 1991-08-08 2015-11-23 2016-10-05 7126 ENSG00000109079 OTTHUMG00000132501 uc002hay.4 NM_021137 CCDS11227 Q13829 "2406243|2233719" MGI:104961 RGD:3877 TNFAIP1 191161 +HGNC:11895 TNFAIP2 TNF alpha induced protein 2 protein-coding gene gene with protein product Approved 14q32 14q32 "B94|EXOC3L3" exocyst complex component 3-like 3 tumor necrosis factor, alpha-induced protein 2 1992-09-29 2015-11-23 2015-11-23 7127 ENSG00000185215 OTTHUMG00000171890 uc059fpb.1 NM_006291 CCDS9979 Q03169 1374453 MGI:104960 RGD:1594556 TNFAIP2 603300 +HGNC:11896 TNFAIP3 TNF alpha induced protein 3 protein-coding gene gene with protein product Approved 6q23.3 06q23.3 "A20|OTUD7C" tumor necrosis factor, alpha-induced protein 3 OTU domain containing 669 1992-10-20 2015-11-23 2016-10-05 7128 ENSG00000118503 OTTHUMG00000015664 uc031spv.2 M59465 NM_006290 CCDS5187 P21580 2118515 MGI:1196377 RGD:1589275 TNFAIP3 191163 369146 C64.003 +HGNC:11898 TNFAIP6 TNF alpha induced protein 6 protein-coding gene gene with protein product Approved 2q23.3 02q23.3 "TSG6|TSG-6" tumor necrosis factor, alpha-induced protein 6 1992-10-20 2015-11-23 2015-11-23 7130 ENSG00000123610 OTTHUMG00000131884 uc002txk.3 NM_007115 CCDS2193 P98066 "1730767|8568267|15060082" MGI:1195266 RGD:621359 TNFAIP6 600410 +HGNC:11899 TNFAIP7 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:17260 TNFAIP8 TNF alpha induced protein 8 protein-coding gene gene with protein product Approved 5q23.1 05q23.1 "GG2-1|MDC-3.13|SCC-S2" tumor necrosis factor, alpha-induced protein 8 2004-02-11 2015-11-23 2015-11-23 25816 ENSG00000145779 OTTHUMG00000162949 uc003ksg.5 AF070671 NM_014350 "CCDS47257|CCDS47258|CCDS68933" O95379 "10233894|10644768" MGI:2147191 RGD:1305908 TNFAIP8 612111 +HGNC:28279 TNFAIP8L1 TNF alpha induced protein 8 like 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC17791 tumor necrosis factor, alpha-induced protein 8-like 1 2005-05-16 2015-11-23 2015-11-23 126282 ENSG00000185361 OTTHUMG00000182013 uc002max.4 BC017672 NM_152362 CCDS12132 Q8WVP5 21924498 MGI:1913693 RGD:1588574 TNFAIP8L1 615869 +HGNC:26277 TNFAIP8L2 TNF alpha induced protein 8 like 2 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 FLJ23467 tumor necrosis factor, alpha-induced protein 8-like 2 2005-05-16 2015-11-23 2016-10-05 79626 ENSG00000163154 OTTHUMG00000012259 uc001ewx.2 BC063014 NM_024575 CCDS985 Q6P589 21924498 MGI:1917019 RGD:1310519 TNFAIP8L2 612112 +HGNC:20620 TNFAIP8L3 TNF alpha induced protein 8 like 3 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 FLJ41287 tumor necrosis factor, alpha-induced protein 8-like 3 2005-05-16 2015-11-23 2015-11-23 388121 ENSG00000183578 OTTHUMG00000172460 uc001zyy.5 AK123281 NM_207381 "CCDS32241|CCDS81881" Q5GJ75 21924498 MGI:2685363 RGD:1311533 TNFAIP8L3 616438 +HGNC:11916 TNFRSF1A TNF receptor superfamily member 1A protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "TNF-R|TNFAR|TNFR60|TNF-R-I|CD120a|TNF-R55" TNFR1 tumor necrosis factor receptor superfamily, member 1A "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1991-01-15 2016-06-28 2016-10-12 7132 ENSG00000067182 OTTHUMG00000168267 uc001qnu.4 M75866 NM_001065 CCDS8542 P19438 "1655358|2158863" MGI:1314884 RGD:621237 "INFEVERS: The repertory of Familial Mediterranean Fever (FMF) and Hereditary Inflammatory Disorders Mutations|http://fmf.igh.cnrs.fr/infevers/|LRG_193|http://www.lrg-sequence.org/LRG/LRG_193" TNFRSF1A 191190 120173 objectId:1870 CD120a +HGNC:11917 TNFRSF1B TNF receptor superfamily member 1B protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "TNFBR|TNFR80|TNF-R75|TNF-R-II|p75|CD120b" TNFR2 tumor necrosis factor receptor superfamily, member 1B "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1991-01-15 2016-06-28 2016-06-28 7133 ENSG00000028137 OTTHUMG00000001829 uc001att.4 M32315 NM_001066 CCDS145 P20333 "2158863|8702885" MGI:1314883 RGD:621238 TNFRSF1B 191191 448527 objectId:1871 CD120b +HGNC:11918 TNFRSF4 TNF receptor superfamily member 4 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "ACT35|OX40|CD134" TXGP1L tumor necrosis factor receptor superfamily, member 4 "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1994-12-15 2016-06-28 2016-10-05 7293 ENSG00000186827 OTTHUMG00000001415 uc001ade.4 X75962 XM_011542074 CCDS11 P43489 "7510240|2828930" MGI:104512 RGD:3920 TNFRSF4 600315 434205 objectId:1873 CD134 +HGNC:11921 TNFRSF6B TNF receptor superfamily member 6b protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "DcR3|DCR3|TR6|M68" tumor necrosis factor receptor superfamily, member 6b, decoy Tumor necrosis factor receptor superfamily 782 1999-01-07 2016-06-28 2016-06-28 8771 ENSG00000243509 OTTHUMG00000143724 uc002yfz.4 AF104419 NM_003823 CCDS13532 O95407 "9872321|10318773" TNFRSF6B 603361 objectId:2322 +HGNC:11923 TNFRSF8 TNF receptor superfamily member 8 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 KI-1 "CD30|D1S166E" tumor necrosis factor receptor superfamily, member 8 "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1992-01-10 2016-06-28 2016-10-05 943 ENSG00000120949 OTTHUMG00000001827 uc001atq.3 M83554 XM_011542441 "CCDS144|CCDS59989" P28908 "1330892|1310894" MGI:99908 RGD:3879 TNFRSF8 153243 objectId:1877 CD30 +HGNC:11924 TNFRSF9 TNF receptor superfamily member 9 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 "CD137|4-1BB" ILA tumor necrosis factor receptor superfamily, member 9 "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1996-06-12 2016-06-28 2016-10-05 3604 ENSG00000049249 OTTHUMG00000001223 uc001aot.4 L12964 XM_011541386 CCDS92 Q07011 "8262389|8639902" MGI:1101059 RGD:1598208 TNFRSF9 602250 objectId:1878 CD137 +HGNC:11904 TNFRSF10A TNF receptor superfamily member 10a protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "DR4|Apo2|TRAILR-1|CD261" tumor necrosis factor receptor superfamily, member 10a "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1998-12-04 2016-06-28 2016-10-05 8797 ENSG00000104689 OTTHUMG00000097843 uc003xda.4 U90875 NM_003844 CCDS6039 O00220 "9311998|9082980" MGI:1341090 RGD:1308041 TNFRSF10A 603611 objectId:1879 CD261 +HGNC:11905 TNFRSF10B TNF receptor superfamily member 10b protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "DR5|KILLER|TRICK2A|TRAIL-R2|TRICKB|CD262" tumor necrosis factor receptor superfamily, member 10b "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1998-12-04 2016-06-28 2016-10-05 8795 ENSG00000120889 OTTHUMG00000097826 uc003xcu.4 AF012628 NM_147187 "CCDS6035|CCDS6036" O14763 "9285725|9311998" MGI:1341090 TNFRSF10B 603612 objectId:1880 CD262 +HGNC:11906 TNFRSF10C TNF receptor superfamily member 10c protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "DcR1|TRAILR3|LIT|TRID|CD263" tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1998-12-04 2016-06-28 2016-10-05 8794 ENSG00000173535 OTTHUMG00000097844 uc003xcy.4 AF012536 NM_003841 CCDS6037 O14798 "9314565|9325248" MGI:1341090 TNFRSF10C 603613 objectId:2323 CD263 +HGNC:11907 TNFRSF10D TNF receptor superfamily member 10d protein-coding gene gene with protein product Approved 8p21.3 08p21.3 "DcR2|TRUNDD|TRAILR4|CD264" tumor necrosis factor receptor superfamily, member 10d, decoy with truncated death domain "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1998-12-04 2016-06-28 2016-10-05 8793 ENSG00000173530 OTTHUMG00000097845 uc003xcz.4 AF029761 NM_003840 CCDS6038 Q9UBN6 "9382840|9537512" MGI:1341090 TNFRSF10D 603614 objectId:2324 CD264 +HGNC:11908 TNFRSF11A TNF receptor superfamily member 11a protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "RANK|CD265|FEO" "PDB2|LOH18CR1" "tumor necrosis factor receptor superfamily, member 11a, activator of NFKB|Paget disease of bone 2|loss of heterozygosity, 18, chromosomal region 1|tumor necrosis factor receptor superfamily, member 11a, NFKB activator" "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1998-12-04 2016-06-28 2016-10-12 8792 ENSG00000141655 OTTHUMG00000132779 uc002lin.5 AF018253 XM_011526244 "CCDS11980|CCDS59324|CCDS74227|CCDS74228" Q9Y6Q6 "9367155|10615125" MGI:1314891 RGD:1563614 LRG_194|http://www.lrg-sequence.org/LRG/LRG_194 TNFRSF11A 603499 120160 objectId:1881 CD265 +HGNC:11909 TNFRSF11B TNF receptor superfamily member 11b protein-coding gene gene with protein product Approved 8q24.12 08q24.12 "OCIF|TR1" OPG "osteoprotegerin|tumor necrosis factor receptor superfamily, member 11b" Tumor necrosis factor receptor superfamily 782 1997-09-05 2016-06-28 2016-10-05 4982 ENSG00000164761 OTTHUMG00000164969 uc003yon.5 U94332 NM_002546 CCDS6326 O00300 9108485 MGI:109587 RGD:619802 TNFRSF11B 602643 120164 objectId:1882 +HGNC:18152 TNFRSF12A TNF receptor superfamily member 12A protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FN14|TweakR|CD266" tumor necrosis factor receptor superfamily, member 12A "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 2002-12-20 2016-06-28 2016-06-28 51330 ENSG00000006327 OTTHUMG00000129001 uc002csv.5 AB035480 NM_016639 CCDS10489 Q9NP84 "10751351|10551889" MGI:1351484 RGD:631329 TNFRSF12A 605914 objectId:1884 CD266 +HGNC:11911 TNFRSF12L entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-09-05 +HGNC:18153 TNFRSF13B TNF receptor superfamily member 13B protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "TACI|CD267|IGAD2" tumor necrosis factor receptor superfamily, member 13B "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 2002-05-22 2016-06-28 2016-10-12 23495 ENSG00000240505 OTTHUMG00000059262 uc002gqs.2 AF023614 NM_012452 CCDS11181 O14836 9311921 MGI:1889411 RGD:1595998 "TNFRSF13Bbase: Mutation registry for TACI deficiency|http://structure.bmc.lu.se/idbase/TNFRSF13Bbase/|LRG_120|http://www.lrg-sequence.org/LRG/LRG_120" TNFRSF13B 604907 120169 objectId:1885 CD267 +HGNC:17755 TNFRSF13C TNF receptor superfamily member 13C protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "BAFFR|CD268" tumor necrosis factor receptor superfamily, member 13C "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 2002-05-22 2016-06-28 2016-10-12 115650 ENSG00000159958 OTTHUMG00000151271 uc003bbl.3 AF373846 NM_052945 CCDS14024 Q96RJ3 11509692 MGI:1919299 RGD:1560810 LRG_184|http://www.lrg-sequence.org/LRG/LRG_184 TNFRSF13C 606269 231494 objectId:1886 CD268 +HGNC:11912 TNFRSF14 TNF receptor superfamily member 14 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "HVEM|ATAR|TR2|LIGHTR|HVEA|CD270" herpesvirus entry mediator "tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)|tumor necrosis factor receptor superfamily, member 14" "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1998-12-04 2016-06-28 2016-06-28 8764 ENSG00000157873 OTTHUMG00000000792 uc001ajr.4 U70321 XM_017002718 CCDS44046 Q92956 "8898196|9162061" MGI:2675303 RGD:1310115 TNFRSF14 602746 objectId:1887 CD270 +HGNC:11913 TNFRSF17 TNF receptor superfamily member 17 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "BCM|CD269|TNFRSF13A" BCMA tumor necrosis factor receptor superfamily, member 17 "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1992-11-20 2016-06-28 2016-10-05 608 ENSG00000048462 OTTHUMG00000129826 uc002dbv.3 Z29574 NM_001192 CCDS10552 Q02223 "1396583|8165126" MGI:1343050 RGD:1304703 TNFRSF17 109545 objectId:1889 CD269 +HGNC:11914 TNFRSF18 TNF receptor superfamily member 18 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "AITR|GITR|CD357" tumor necrosis factor receptor superfamily, member 18 "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 1998-12-04 2016-06-28 2016-10-05 8784 ENSG00000186891 OTTHUMG00000001414 uc001add.4 AF125304 NM_004195 "CCDS9|CCDS10|CCDS30552" Q9Y5U5 "9177197|10037686" MGI:894675 RGD:1565872 TNFRSF18 603905 objectId:1890 +HGNC:11915 TNFRSF19 TNF receptor superfamily member 19 protein-coding gene gene with protein product Approved 13q12.12 13q12.12 "TAJ-alpha|TROY|TAJ|TRADE" toxicity and JNK inducer tumor necrosis factor receptor superfamily, member 19 Tumor necrosis factor receptor superfamily 782 2000-01-11 2016-06-28 2016-10-05 55504 ENSG00000127863 OTTHUMG00000016568 uc001uov.2 AB040434 NM_018647 "CCDS9301|CCDS9302|CCDS55893" Q9NS68 "10764796|10809768" MGI:1352474 RGD:1564996 TNFRSF19 606122 objectId:1891 +HGNC:13469 TNFRSF21 TNF receptor superfamily member 21 protein-coding gene gene with protein product Approved 6p12.3 06p12.3 "DR6|CD358" death receptor 6 tumor necrosis factor receptor superfamily, member 21 "CD molecules|Tumor necrosis factor receptor superfamily" "471|782" 2001-07-27 2016-06-28 2016-10-05 27242 ENSG00000146072 OTTHUMG00000014796 uc003oyv.5 AF068868 NM_014452 CCDS4921 O75509 9714541 MGI:2151075 RGD:1307308 TNFRSF21 605732 objectId:1893 +HGNC:11910 TNFRSF25 TNF receptor superfamily member 25 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 "DR3|TRAMP|WSL-1|LARD|WSL-LR|DDR3|TR3|APO-3" TNFRSF12 "tumor necrosis factor receptor superfamily, member 12 (translocating chain-association membrane protein)|tumor necrosis factor receptor superfamily, member 25" Tumor necrosis factor receptor superfamily 782 1998-12-04 2002-12-20 2016-06-28 2016-10-05 8718 ENSG00000215788 OTTHUMG00000000831 uc001anh.4 U72763 NM_148965 "CCDS71|CCDS72|CCDS73|CCDS74|CCDS75" Q93038 "9052839|8934525" MGI:1934667 RGD:1598206 TNFRSF25 603366 objectId:1883 +HGNC:11934 TNFSF4 tumor necrosis factor superfamily member 4 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "OX-40L|gp34|CD252" TXGP1 "tax-transcriptionally activated glycoprotein 1, 34kD|tumor necrosis factor (ligand) superfamily, member 4" "CD molecules|Tumor necrosis factor superfamily" "471|781" 1993-12-15 2015-11-19 2016-10-05 7292 ENSG00000117586 OTTHUMG00000034838 uc001giw.4 D90224 XM_011509964 "CCDS1306|CCDS72985" P23510 "1996093|8076595" MGI:104511 RGD:619816 TNFSF4 603594 369265 CD252 +HGNC:11938 TNFSF8 tumor necrosis factor superfamily member 8 protein-coding gene gene with protein product Approved 9q32-q33.1 09q32-q33.1 CD153 CD30LG tumor necrosis factor (ligand) superfamily, member 8 "CD molecules|Tumor necrosis factor superfamily" "471|781" 1993-11-08 2015-11-19 2016-10-11 944 ENSG00000106952 OTTHUMG00000021025 uc004bji.3 L09753 XR_001746422 "CCDS6810|CCDS75884" P32971 "8391931|9349718" MGI:88328 RGD:1590403 TNFSF8 603875 CD153 +HGNC:11939 TNFSF9 tumor necrosis factor superfamily member 9 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 4-1BB-L "receptor 4-1BB ligand|homolog of mouse 4-1BB-L" tumor necrosis factor (ligand) superfamily, member 9 Tumor necrosis factor superfamily 781 1998-12-04 2015-11-19 2015-11-19 8744 ENSG00000125657 OTTHUMG00000181831 uc002mfh.2 U03398 NM_003811 CCDS12169 P41273 "8405064|8088337" MGI:1101058 RGD:727974 TNFSF9 606182 +HGNC:11925 TNFSF10 tumor necrosis factor superfamily member 10 protein-coding gene gene with protein product Approved 3q26 03q26 "TRAIL|Apo-2L|TL2|CD253" tumor necrosis factor (ligand) superfamily, member 10 "CD molecules|Tumor necrosis factor superfamily" "471|781" 1998-12-04 2015-11-19 2015-11-19 8743 ENSG00000121858 OTTHUMG00000156917 uc003fid.3 U37518 NM_003810 "CCDS3219|CCDS54680" P50591 "8777713|8663110" MGI:107414 RGD:628734 TNFSF10 603598 CD253 +HGNC:11926 TNFSF11 tumor necrosis factor superfamily member 11 protein-coding gene gene with protein product Approved 13q14 13q14 "TRANCE|RANKL|OPGL|ODF|CD254" tumor necrosis factor (ligand) superfamily, member 11 "CD molecules|Tumor necrosis factor superfamily" "471|781" 1998-12-04 2015-11-19 2015-11-19 8600 ENSG00000120659 OTTHUMG00000016807 uc001uyu.3 AF013171 XM_017020802 "CCDS9384|CCDS9385" O14788 "9312132|9367155" MGI:1100089 RGD:620784 TNFSF11 602642 159048 CD254 +HGNC:11927 TNFSF12 tumor necrosis factor superfamily member 12 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "TWEAK|DR3LG|APO3L" tumor necrosis factor (ligand) superfamily, member 12 Tumor necrosis factor superfamily 781 1998-12-04 2015-11-19 2015-11-19 8742 ENSG00000239697 OTTHUMG00000108148 uc002ghg.4 AF030099 NM_003809 CCDS11109 O43508 "9405449|9560343" MGI:1196259 RGD:1359620 TNFSF12 602695 332459 +HGNC:33537 TNFSF12-TNFSF13 TNFSF12-TNFSF13 readthrough other readthrough Approved 17p13.1 17p13.1 TWE-PRIL 2007-07-31 2014-11-19 407977 ENSG00000248871 OTTHUMG00000161573 uc002ghi.2 AY081051 NM_172089 CCDS11108 12411489 MGI:3845075 TNFSF12-TNFSF13 +HGNC:11928 TNFSF13 tumor necrosis factor superfamily member 13 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "APRIL|CD256" tumor necrosis factor (ligand) superfamily, member 13 "CD molecules|Tumor necrosis factor superfamily" "471|781" 1998-12-04 2015-11-19 2015-11-19 8741 ENSG00000161955 OTTHUMG00000108145 uc002ghk.3 AF046888 NM_003808 "CCDS11111|CCDS11112|CCDS42256|CCDS56019|CCDS73957|CCDS56018" O75888 9743536 MGI:1916833 RGD:1305871 TNFSF13 604472 CD256 +HGNC:11929 TNFSF13B tumor necrosis factor superfamily member 13b protein-coding gene gene with protein product Approved 13q33.3 13q33.3 "BAFF|THANK|BLYS|TALL-1|TALL1|CD257" TNFSF20 tumor necrosis factor (ligand) superfamily, member 13b "CD molecules|Tumor necrosis factor superfamily" "471|781" 1999-07-19 2015-11-19 2016-10-05 10673 ENSG00000102524 OTTHUMG00000017329 uc001vqr.4 AF136293 XR_001749468 "CCDS9509|CCDS45067" Q9Y275 "10331498|10359578" MGI:1344376 RGD:1561519 TNFSF13B 603969 CD257 +HGNC:11930 TNFSF14 tumor necrosis factor superfamily member 14 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "LIGHT|LTg|HVEM-L|CD258" tumor necrosis factor (ligand) superfamily, member 14 "CD molecules|Tumor necrosis factor superfamily" "471|781" 1998-12-04 2015-11-19 2015-11-19 8740 ENSG00000125735 OTTHUMG00000181835 uc002mfk.3 AF036581 NM_172014 "CCDS12171|CCDS45939" O43557 9462508 MGI:1355317 RGD:1588572 TNFSF14 604520 CD258 +HGNC:11931 TNFSF15 tumor necrosis factor superfamily member 15 protein-coding gene gene with protein product Approved 9q32 09q32 "TL1|VEGI|TL1A|VEGI192A|MGC129934|MGC129935" "vascular endothelial cell growth inhibitor|TNF superfamily ligand TL1A|TNF ligand-related molecule 1|vascular endothelial growth inhibitor-192A" tumor necrosis factor (ligand) superfamily, member 15 Tumor necrosis factor superfamily 781 1998-12-04 2015-11-19 2015-11-19 9966 ENSG00000181634 OTTHUMG00000021011 uc004bjh.4 AF039390 NM_005118 CCDS6809 O95150 9434163 MGI:2180140 RGD:628735 TNFSF15 604052 317398 +HGNC:11932 TNFSF18 tumor necrosis factor superfamily member 18 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "AITRL|TL6|hGITRL" tumor necrosis factor (ligand) superfamily, member 18 Tumor necrosis factor superfamily 781 1999-01-15 2015-11-19 2016-10-05 8995 ENSG00000120337 OTTHUMG00000034835 uc001giu.3 AF117713 NM_005092 CCDS1305 Q9UNG2 "10037686|10074428" MGI:2673064 RGD:1305066 TNFSF18 603898 +HGNC:30765 TNIK TRAF2 and NCK interacting kinase protein-coding gene gene with protein product Approved 3q26.2-q26.31 03q26.2-q26.31 KIAA0551 2004-02-26 2016-10-11 23043 ENSG00000154310 OTTHUMG00000159036 uc003fhh.3 AF172264 XM_039796 "CCDS46956|CCDS54673|CCDS54674|CCDS54675|CCDS54676|CCDS54677|CCDS54678|CCDS54679" Q9UKE5 "9628581|10521462" MGI:1916264 RGD:1561817 TNIK 610005 461336 objectId:2244 +HGNC:16903 TNIP1 TNFAIP3 interacting protein 1 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 "NAF1|KIAA0113|ABIN-1|VAN" "virion-associated nuclear-shuttling protein|Nef-associated factor 1 SNP" 2002-10-03 2016-01-15 10318 ENSG00000145901 OTTHUMG00000163722 uc003ltj.4 AJ011895 NM_006058 "CCDS34280|CCDS58982|CCDS58983|CCDS58984|CCDS58985|CCDS75359" Q15025 "9923610|11090181" MGI:1926194 RGD:1309380 TNIP1 607714 369132 +HGNC:19118 TNIP2 TNFAIP3 interacting protein 2 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "ABIN-2|MGC4289|KLIP|FLIP1" 2002-10-03 2014-11-18 79155 ENSG00000168884 OTTHUMG00000090267 uc003gfg.2 BC002740 NM_024309 "CCDS3362|CCDS54714|CCDS75093" Q8NFZ5 "11390377|12933576" MGI:2386643 RGD:1307717 TNIP2 610669 +HGNC:19315 TNIP3 TNFAIP3 interacting protein 3 protein-coding gene gene with protein product Approved 4q27 04q27 "LIND|FLJ21162|ABIN-3" 2002-11-28 2015-08-26 79931 ENSG00000050730 OTTHUMG00000132969 uc010ing.4 AJ320534 NM_024873 "CCDS3718|CCDS58925|CCDS58926" Q96KP6 11345586 MGI:3041165 RGD:1588732 TNIP3 608019 +HGNC:11940 TNK1 tyrosine kinase non receptor 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 tyrosine kinase, non-receptor, 1 1998-12-03 2016-04-28 2016-04-28 8711 ENSG00000174292 OTTHUMG00000178174 uc002ggj.5 U43408 NM_003985 "CCDS45602|CCDS58510" Q13470 8632913 MGI:1930958 RGD:1310113 TNK1 608076 objectId:2245 +HGNC:19297 TNK2 tyrosine kinase non receptor 2 protein-coding gene gene with protein product Approved 3q29 03q29 "p21cdc42Hs|ACK|ACK1" activated Cdc42-associated kinase 1 tyrosine kinase, non-receptor, 2 2005-01-19 2016-04-28 2016-04-28 10188 ENSG00000061938 OTTHUMG00000155737 uc003fvu.2 L13738 NM_005781 "CCDS33927|CCDS33928|CCDS77875" Q07912 "8497321|14506255" MGI:1858308 RGD:1305957 TNK2 606994 392281 objectId:2246 +HGNC:49093 TNK2-AS1 TNK2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 2013-09-02 2013-09-02 100128262 ENSG00000224614 OTTHUMG00000155738 AK127609 +HGNC:11941 TNKS tankyrase protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "TIN1|TINF1|TNKS1|PARP-5a|PARP5A|pART5" TRF1-interacting ankyrin-related ADP-ribose polymerase 1 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase "Ankyrin repeat domain containing|Poly(ADP-ribose) polymerases|Sterile alpha motif domain containing" "403|684|760" 1999-01-08 2016-03-01 2016-03-01 8658 ENSG00000173273 OTTHUMG00000090481 uc003wss.4 AF082556 NM_003747 CCDS5974 O95271 "9822378|10198177" MGI:1341087 RGD:1308784 TNKS 603303 +HGNC:19081 TNKS1BP1 tankyrase 1 binding protein 1 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "TAB182|KIAA1741|FLJ45975" tankyrase 1 binding protein 1, 182kDa 2002-08-06 2015-11-09 2016-10-05 85456 ENSG00000149115 OTTHUMG00000167022 uc001njs.4 AB051528 NM_033396 CCDS7951 Q9C0C2 11854288 MGI:2446193 RGD:1312021 TNKS1BP1 607104 +HGNC:15677 TNKS2 tankyrase 2 protein-coding gene gene with protein product Approved 10q23.32 10q23.32 "TNKL|TANK2|PARP-5b|PARP-5c|PARP5B|PARP5C|pART6" TRF1-interacting ankyrin-related ADP-ribose polymerase 2 tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 "Ankyrin repeat domain containing|Poly(ADP-ribose) polymerases|Sterile alpha motif domain containing" "403|684|760" 2001-05-10 2016-03-01 2016-10-05 80351 ENSG00000107854 OTTHUMG00000018747 uc001khp.4 AF342982 NM_025235 CCDS7417 Q9H2K2 MGI:1921743 RGD:6496922 TNKS2 607128 +HGNC:45173 TNKS2-AS1 TNKS2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 10q23.32 10q23.32 TNKS2 antisense RNA 1 2013-03-01 2013-03-15 2013-03-15 100507633 ENSG00000228701 OTTHUMG00000018750 uc031wof.2 AA776692 NR_108070 +HGNC:17757 TNMD tenomodulin protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "myodulin|ChM1L|tendin|TEM|BRICD4" BRICHOS domain containing 4 BRICHOS domain containing 457 2004-06-09 2016-10-05 64102 ENSG00000000005 OTTHUMG00000022001 uc004efy.5 AF191770 NM_022144 CCDS14469 Q9H2S6 MGI:1929885 RGD:620938 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TNMD TNMD 300459 +HGNC:22942 TNN tenascin N protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "Fibrinogen C domain containing|Fibronectin type III domain containing" "554|555" 2003-07-25 2016-10-05 63923 ENSG00000120332 OTTHUMG00000034882 uc001gkl.1 AK127044 XM_040527 CCDS30943 Q9UQP3 MGI:2665790 RGD:1306002 TNN +HGNC:11943 TNNC1 troponin C1, slow skeletal and cardiac type protein-coding gene gene with protein product Approved 3p21.1 03p21.1 TNNC troponin C type 1 (slow) "EF-hand domain containing|Troponin complex subunits" "863|1219" 1989-12-11 2016-02-16 2016-10-12 7134 ENSG00000114854 OTTHUMG00000158572 uc003deb.4 NM_003280 CCDS2857 P63316 MGI:98779 RGD:1309921 LRG_378|http://www.lrg-sequence.org/LRG/LRG_378 TNNC1 191040 159055 +HGNC:11944 TNNC2 troponin C2, fast skeletal type protein-coding gene gene with protein product Approved 20q13.12 20q13.12 troponin C type 2 (fast) "EF-hand domain containing|Troponin complex subunits" "863|1219" 1995-05-25 2016-02-16 2016-10-05 7125 ENSG00000101470 OTTHUMG00000032623 uc002xpr.4 NM_003279 CCDS13375 P02585 2373703 MGI:98780 RGD:1311973 TNNC2 191039 +HGNC:11945 TNNI1 troponin I1, slow skeletal type protein-coding gene gene with protein product Approved 1q32.1 01q32.1 troponin I type 1 (skeletal, slow) Troponin complex subunits 1219 1989-12-11 2016-02-16 2016-10-05 7135 ENSG00000159173 OTTHUMG00000035736 uc057oic.1 BC012600 NM_003281 CCDS1411 P19237 "2365354|8144655" MGI:105073 RGD:621765 TNNI1 191042 +HGNC:11946 TNNI2 troponin I2, fast skeletal type protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "FSSV|DA2B" "troponin I, fast-twitch skeletal muscle isoform|troponin I fast twitch 2" AMCD2B "troponin I, skeletal, fast|arthrogryposis multiplex congenita, distal, type 2B|troponin I type 2 (skeletal, fast)" Troponin complex subunits 1219 1989-12-11 2016-02-16 2016-10-12 7136 ENSG00000130598 OTTHUMG00000012253 uc057xue.1 L21715 NM_003282 "CCDS31333|CCDS53594" P48788 "9016781|12592607" MGI:105070 RGD:62050 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=TNNI2|LRG_851|http://www.lrg-sequence.org/LRG/LRG_851" TNNI2 191043 120182 +HGNC:11947 TNNI3 troponin I3, cardiac type protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "TNNC1|CMH7" CMD2A "cardiomyopathy, dilated 2A (autosomal recessive)|troponin I type 3 (cardiac)|troponin I type 3" Troponin complex subunits 1219 1989-12-11 2016-02-16 2016-10-12 7137 ENSG00000129991 OTTHUMG00000180589 uc002qjg.5 M64247 NM_000363 CCDS42628 P19429 "9605869|9241277|10806205" MGI:98783 RGD:62052 "FHC Mutation Database|http://www.angis.org.au/Databases/Heart/heartbreak.html|LRG_432|http://www.lrg-sequence.org/LRG/LRG_432" TNNI3 191044 120184 +HGNC:19661 TNNI3K TNNI3 interacting kinase protein-coding gene gene with protein product Approved 1p31.1 01p31.1 CARK 2004-01-19 2016-10-12 51086 ENSG00000116783 OTTHUMG00000171318 uc001dgf.3 AF116826 NM_015978 "CCDS664|CCDS44161" Q59H18 12721663 MGI:2443276 RGD:727908 LRG_678|http://www.lrg-sequence.org/LRG/LRG_678 TNNI3K 613932 444714 objectId:2247 +HGNC:11948 TNNT1 troponin T1, slow skeletal type protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "ANM|STNT|TNT|TNTS|FLJ98147|MGC104241|NEM5" "slow skeletal muscle troponin T|troponin T1, skeletal, slow|nemaline myopathy type 5" troponin T type 1 (skeletal, slow) Troponin complex subunits 1219 1990-09-10 2016-02-16 2016-10-12 7138 ENSG00000105048 OTTHUMG00000180542 uc002qjb.5 NM_003283 "CCDS12917|CCDS46185|CCDS59421" P13805 1505979 MGI:1333868 RGD:621852 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=TNNT1|LRG_679|http://www.lrg-sequence.org/LRG/LRG_679" TNNT1 191041 120188 +HGNC:11949 TNNT2 troponin T2, cardiac type protein-coding gene gene with protein product Approved 1q32.1 01q32.1 CMPD2 "CMH2|CMD1D" "cardiomyopathy, hypertrophic 2|cardiomyopathy, dilated 1D (autosomal dominant)|troponin T type 2 (cardiac)" Troponin complex subunits 1219 1993-09-27 2016-02-16 2016-10-12 7139 ENSG00000118194 OTTHUMG00000035733 uc057ohe.1 X74819 NM_000364 "CCDS30968|CCDS30969|CCDS60390|CCDS73002|CCDS73003" P45379 "8088824|8205619|9482583" MGI:104597 RGD:3882 "FHC Mutation Database|http://www.angis.org.au/Databases/Heart/heartbreak.html|LRG_431|http://www.lrg-sequence.org/LRG/LRG_431" TNNT2 191045 120190 +HGNC:11950 TNNT3 troponin T3, fast skeletal type protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "AMCD2B|DA2B|FSSV|DKFZp779M2348" troponin-T3, skeletal, fast "troponin T3, skeletal, fast|troponin T type 3 (skeletal, fast)" Troponin complex subunits 1219 1994-07-25 2016-02-16 2016-10-12 7140 ENSG00000130595 OTTHUMG00000012475 uc001luu.5 M21984 NM_006757 "CCDS7727|CCDS41594|CCDS41595|CCDS41596" P45378 8172653 MGI:109550 RGD:3883 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=TNNT3|LRG_850|http://www.lrg-sequence.org/LRG/LRG_850" TNNT3 600692 120192 +HGNC:11951 TNP1 transition protein 1 protein-coding gene gene with protein product Approved 2q35 02q35 spermatid nuclear transition protein 1 transition protein 1 (during histone to protamine replacement) 1990-03-14 2015-11-19 2016-10-05 7141 ENSG00000118245 OTTHUMG00000133057 uc002vgk.4 NM_003284 CCDS2406 P09430 2249851 MGI:98784 RGD:3884 TNP1 190231 +HGNC:11952 TNP2 transition protein 2 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 TP2 transition protein 2 (during histone to protamine replacement) 1990-03-14 2016-07-19 2016-07-19 7142 ENSG00000178279 OTTHUMG00000172315 uc002das.4 NM_005425 CCDS45410 Q05952 "1395729|2250010" MGI:98785 RGD:3885 TNP2 190232 +HGNC:6401 TNPO1 transportin 1 protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "MIP|TRN|IPO2|MIP1" importin 2 KPNB2 karyopherin (importin) beta 2 Importins 596 1997-04-21 2004-01-30 2004-01-29 2016-10-05 3842 ENSG00000083312 OTTHUMG00000100967 uc003kci.5 U70322 NM_002270 "CCDS4016|CCDS43329" Q92973 "8808633|9144189" MGI:2681523 RGD:1308372 TNPO1 602901 +HGNC:45120 TNPO1P1 transportin 1 pseudogene 1 pseudogene pseudogene Approved 10q23.1 10q23.1 2013-02-15 2013-02-15 100418919 ENSG00000225423 OTTHUMG00000018640 NG_025528 PGOHUM00000238863 +HGNC:45121 TNPO1P2 transportin 1 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2013-02-15 2013-05-20 252968 ENSG00000230662 OTTHUMG00000059250 NG_001592 PGOHUM00000237258 +HGNC:50718 TNPO1P3 transportin 1 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2014-06-12 2014-06-12 339257 ENSG00000229586 OTTHUMG00000178885 NG_002721 PGOHUM00000264449 +HGNC:19998 TNPO2 transportin 2 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "IPO3|KPNB2B|FLJ12155|TRN2" "importin 3|karyopherin beta 2b" Importins 596 2003-12-09 2009-01-12 2014-11-19 30000 ENSG00000105576 OTTHUMG00000180333 uc002muq.4 AF019039 NM_013433 "CCDS45991|CCDS45992" O14787 "9298975|12384575" MGI:2384849 RGD:1310356 TNPO2 603002 +HGNC:17103 TNPO3 transportin 3 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "TRN-SR|MTR10A|TRN-SR2|IPO12" importin 12 LGMD1F limb girdle muscular dystrophy 1F (autosomal dominant) Importins 596 2003-12-09 2016-10-05 23534 ENSG00000064419 OTTHUMG00000158409 uc003vol.3 AF145029 NM_012470 "CCDS5809|CCDS55162" Q9Y5L0 "10366588|10713112|23543484|23667635" MGI:1196412 RGD:1308938 TNPO3 610032 239874 +HGNC:11953 TNR tenascin R protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "restrictin|janusin" "Fibrinogen C domain containing|Fibronectin type III domain containing" "554|555" 1995-10-24 2012-07-12 2016-10-05 7143 ENSG00000116147 OTTHUMG00000034876 uc009wwu.2 X98085 NM_003285 CCDS1318 Q92752 "8626505|8940128" MGI:99516 RGD:3886 TNR 601995 +HGNC:41391 TNR-IT1 TNR intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1q25.1 01q25.1 TNR intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874256 ENSG00000235628 OTTHUMG00000034946 uc057nmr.1 +HGNC:11954 TNR1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-01-29 +HGNC:11969 TNRC6A trinucleotide repeat containing 6A protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "CAGH26|KIAA1460|GW182" TNRC6 trinucleotide repeat containing 6 Trinucleotide repeat containing 775 2000-01-27 2004-12-17 2004-12-17 2016-10-05 27327 ENSG00000090905 OTTHUMG00000096999 uc002dmm.4 U80739 NM_020847 "CCDS10624|CCDS81959" Q8NDV7 9225980 MGI:2385292 RGD:1307268 TNRC6A 610739 +HGNC:29190 TNRC6B trinucleotide repeat containing 6B protein-coding gene gene with protein product Approved 22q13.1 22q13.1 KIAA1093 Trinucleotide repeat containing 775 2004-12-17 2016-10-05 23112 ENSG00000100354 OTTHUMG00000151114 uc011aor.3 AB029016 NM_015088 "CCDS46712|CCDS46713|CCDS54533" Q9UPQ9 MGI:2443730 RGD:621428 TNRC6B 610740 +HGNC:29318 TNRC6C trinucleotide repeat containing 6C protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "KIAA1582|FLJ20015" Trinucleotide repeat containing 775 2004-12-17 2016-05-06 57690 ENSG00000078687 OTTHUMG00000132642 uc060krg.1 AL834429 NM_018996 "CCDS45798|CCDS45799" Q9HCJ0 "19470757|26106978" MGI:2443265 RGD:1310027 TNRC6C 610741 +HGNC:44360 TNRC6C-AS1 TNRC6C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q25.3 17q25.3 2013-05-21 2013-05-21 100131096 ENSG00000204282 OTTHUMG00000177654 NR_040071 +HGNC:11961 TNRC17 trinucleotide repeat containing 17 other unknown Approved 2q21.3 02q21.3 CAGL234 Trinucleotide repeat containing 775 2000-01-27 2008-06-03 27321 U80752 9225980 +HGNC:11962 TNRC18 trinucleotide repeat containing 18 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "CAGL79|TNRC18A|KIAA1856" Trinucleotide repeat containing 775 2000-01-27 2015-08-26 84629 ENSG00000182095 OTTHUMG00000151831 uc003soi.5 U80753 XM_017012728 CCDS47534 O15417 9225980 MGI:3648294 RGD:1307540 TNRC18 +HGNC:43881 TNRC18P1 trinucleotide repeat containing 18 pseudogene 1 pseudogene pseudogene Approved 4q31.21 04q31.21 2012-04-17 2015-02-27 2015-02-27 644962 ENSG00000249661 OTTHUMG00000161424 NR_077215 PGOHUM00000245713 +HGNC:34014 TNRC18P2 trinucleotide repeat containing 18 pseudogene 2 pseudogene pseudogene Approved 7q11.21 07q11.21 TNRC18B trinucleotide repeat containing 18B 2008-12-10 2012-04-17 2012-04-17 2012-04-17 27320 ENSG00000223566 OTTHUMG00000156501 NG_009899 PGOHUM00000232790 +HGNC:34015 TNRC18P3 trinucleotide repeat containing 18 pseudogene 3 pseudogene pseudogene Approved 7p11.2 07p11.2 TNRC18C trinucleotide repeat containing 18C (pseudogene) 2008-12-10 2012-04-17 2012-04-17 2014-11-19 340221 ENSG00000189166 OTTHUMG00000156098 NG_009812 PGOHUM00000233275 +HGNC:11973 TNS1 tensin 1 protein-coding gene gene with protein product Approved 2q35 02q35 "DKFZp586K0617|PPP1R155" protein phosphatase 1, regulatory subunit 155 "TNS|MXRA6" "tensin|matrix-remodelling associated 6" "Protein phosphatase 1 regulatory subunits|SH2 domain containing|C2 tensin-type domain containing|PTEN protein phosphatases" "694|741|837|902" 1995-03-30 2005-05-13 2005-05-13 2016-10-05 7145 ENSG00000079308 OTTHUMG00000133056 uc002vgt.3 AB209238 NM_022648 "CCDS2407|CCDS77528|CCDS77529" Q9HBL0 MGI:104552 RGD:68427 TNS1 600076 +HGNC:19737 TNS2 tensin 2 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "KIAA1075|C1-TEN" TENC1 "tensin like C1 domain-containing phosphatase|tensin like C1 domain containing phosphatase (tensin 2)" "SH2 domain containing|C2 tensin-type domain containing|PTEN protein phosphatases" "741|837|902" 2002-12-09 2015-01-09 2015-01-09 2015-01-09 23371 ENSG00000111077 OTTHUMG00000169730 AF518729 NM_170754 "CCDS8842|CCDS8843|CCDS8844" Q63HR2 MGI:2387586 RGD:1310917 607717 +HGNC:21616 TNS3 tensin 3 protein-coding gene gene with protein product Approved 7p12.3 07p12.3 "TEM6|H_NH0549I23.2|FLJ13732" tumor endothelial marker 6 TENS1 tensin-like SH2 domain-containing 1 "SH2 domain containing|C2 tensin-type domain containing" "741|837" 2003-08-27 2005-05-13 2005-05-13 2014-11-19 64759 ENSG00000136205 OTTHUMG00000074075 uc003tnw.3 AF378756 NM_022748 CCDS5506 Q68CZ2 11559528 MGI:2443012 RGD:1564174 TNS3 606825 +HGNC:24352 TNS4 tensin 4 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 CTEN C terminal tensin like SH2 domain containing 741 2005-05-13 2014-11-19 84951 ENSG00000131746 OTTHUMG00000133330 uc010cxb.4 AF417488 NM_032865 CCDS11368 Q8IZW8 "12154022|12711115" MGI:2144377 RGD:1310402 TNS4 608385 +HGNC:11975 TNXA tenascin XA (pseudogene) pseudogene pseudogene Approved 6p21.33 06p21.33 "XA|D6S103E|HXBL" TNX tenascin XA 1995-05-08 2011-04-15 2016-10-05 7146 ENSG00000248290 OTTHUMG00000031024 AF077974 NR_001284 Q16473 "2475872|1988494" RGD:3887 PGOHUM00000260124 +HGNC:11976 TNXB tenascin XB protein-coding gene gene with protein product Approved 6p21.33-p21.32 06p21.33-p21.32 "TNXBS|XBS|XB" "TNXB1|TNXB2" "Fibrinogen C domain containing|Fibronectin type III domain containing" "554|555" 2000-07-25 2016-10-11 7148 ENSG00000168477 OTTHUMG00000031088 uc063nnw.1 X71923 NM_019105 CCDS4736 P22105 8530023 MGI:1932137 RGD:1594402 TNXB 600985 120194 +HGNC:11979 TOB1 transducer of ERBB2, 1 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "TOB|TROB|APRO5" TROB1 BTG/Tob family 1309 2000-06-01 2016-07-04 10140 ENSG00000141232 OTTHUMG00000162277 uc021uad.2 D38305 NM_005749 CCDS11576 P50616 "8632892|17785442" MGI:1349721 RGD:621126 TOB1 605523 +HGNC:44340 TOB1-AS1 TOB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q21.33 17q21.33 TOB1 antisense RNA 1 (non-protein coding) 2012-08-14 2012-08-15 2012-10-12 400604 ENSG00000229980 OTTHUMG00000132428 uc060hnf.1 "BC039664|BP421960|BQ222352|BU600024" NR_038458 +HGNC:11980 TOB2 transducer of ERBB2, 2 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "TOBL|TOB4|bK223H9|APRO5" TROB2 BTG/Tob family 1309 2000-06-01 2016-07-04 10766 ENSG00000183864 OTTHUMG00000150970 uc003azz.2 D64109 NM_016272 CCDS14015 Q14106 "10602502|10591208" MGI:1888525 RGD:1359722 TOB2 607396 +HGNC:13986 TOB2P1 transducer of ERBB2, 2 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "TOB4p|p373c6.3" TOB2P transducer of ERBB2, 2 pseudogene 2003-11-27 2010-02-26 2010-02-26 2014-11-19 222699 ENSG00000176933 OTTHUMG00000014512 BC050562 NR_002936 12477932 TOB2P1 PGOHUM00000243100 +HGNC:15954 TOE1 target of EGR1, member 1 (nuclear) protein-coding gene gene with protein product Approved 1p34.1 01p34.1 hCaf1z 2001-08-24 2016-10-05 114034 ENSG00000132773 OTTHUMG00000007678 uc009vxq.4 NM_025077 CCDS521 Q96GM8 12562764 MGI:1915526 RGD:1309094 TOE1 613931 +HGNC:16476 TOLLIP toll interacting protein protein-coding gene gene with protein product Approved 11p15.5 11p15.5 IL-1RAcPIP C2 domain containing 823 2003-03-13 2016-10-05 54472 ENSG00000078902 OTTHUMG00000133333 uc001lte.4 AJ242972 NM_019009 "CCDS7723|CCDS81532|CCDS81533|CCDS81534" Q9H0E2 "9426216|10854325" MGI:1891808 RGD:1304676 TOLLIP 606277 +HGNC:27403 TOLLIP-AS1 TOLLIP antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 11p15.5 11p15.5 2013-05-31 2013-05-31 255512 ENSG00000255153 OTTHUMG00000166230 NR_029409 12477932 +HGNC:11982 TOM1 target of myb1 membrane trafficking protein protein-coding gene gene with protein product Approved 22q12.3 22q12.3 "target of myb1 (chicken) homolog|target of myb1 (chicken)" 1998-10-14 2015-06-18 2016-10-05 10043 ENSG00000100284 OTTHUMG00000150958 uc003ann.3 AJ006973 NM_005488 "CCDS13913|CCDS46696|CCDS46697|CCDS46698" O60784 "10329004|15047686|20604899" MGI:1338026 RGD:1308024 TOM1 604700 +HGNC:11983 TOM1L1 target of myb1 like 1 membrane trafficking protein protein-coding gene gene with protein product Approved 17q23.2 17q23.2 SRCASM "target of myb1 (chicken) homolog-like 1|target of myb1 (chicken)-like 1" 1998-10-14 2015-06-18 2015-08-26 10040 ENSG00000141198 OTTHUMG00000177816 uc002iud.3 AJ010071 NM_005486 "CCDS11582|CCDS82160|CCDS82161" O75674 "10329004|15611048|17977829" MGI:1919193 RGD:1562626 TOM1L1 604701 +HGNC:11984 TOM1L2 target of myb1 like 2 membrane trafficking protein protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "target of myb1 (chicken) homolog-like 1|target of myb1-like 2 (chicken)" 1999-04-16 2015-06-18 2015-09-08 146691 ENSG00000175662 OTTHUMG00000059353 uc002grz.5 AJ230803 XM_005256461 "CCDS32584|CCDS42270|CCDS74000|CCDS74001|CCDS74002|CCDS74003" Q6ZVM7 10036180 MGI:2443306 RGD:1306728 TOM1L2 615519 +HGNC:31369 TOMM5 translocase of outer mitochondrial membrane 5 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 "bA613M10.3|Tom5" C9orf105 "chromosome 9 open reading frame 105|translocase of outer mitochondrial membrane 5 homolog (yeast)" Translocase of outer mitochondrial membrane complex 1229 2004-06-02 2008-08-21 2016-02-26 2016-02-26 401505 ENSG00000175768 OTTHUMG00000019923 uc010mlx.4 BC029423 NM_001001790 "CCDS43803|CCDS47967|CCDS47968" Q8N4H5 18331822 MGI:1915762 RGD:1596808 TOMM5 616169 +HGNC:34528 TOMM6 translocase of outer mitochondrial membrane 6 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "OBTP|Tom6" over-expressed breast tumor protein translocase of outer mitochondrial membrane 6 homolog (yeast) Translocase of outer mitochondrial membrane complex 1229 2008-08-21 2016-02-26 2016-02-26 100188893 ENSG00000214736 OTTHUMG00000137505 uc011dug.2 AF216754 NM_001134493 CCDS47424 Q96B49 18331822 MGI:1913369 RGD:1583567 TOMM6 616168 +HGNC:21648 TOMM7 translocase of outer mitochondrial membrane 7 protein-coding gene gene with protein product Approved 7p15.3 07p15.3 Tom7 translocase of outer mitochondrial membrane 7 homolog (yeast) Translocase of outer mitochondrial membrane complex 1229 2003-07-21 2016-02-26 2016-02-26 54543 ENSG00000196683 OTTHUMG00000094805 uc003svk.6 AF150733 NM_019059 CCDS5376 Q9P0U1 "10647823|12198123" MGI:1913419 RGD:1591393 TOMM7 607980 +HGNC:20947 TOMM20 translocase of outer mitochondrial membrane 20 protein-coding gene gene with protein product Approved 1q42.3 01q42.3 "KIAA0016|TOM20|MOM19|MAS20" translocase of outer mitochondrial membrane 20 homolog type II translocase of outer mitochondrial membrane 20 homolog (yeast) Translocase of outer mitochondrial membrane complex 1229 2003-10-13 2016-02-26 2016-10-05 9804 ENSG00000173726 OTTHUMG00000039619 uc001hwl.4 NM_014765 CCDS1603 Q15388 "7498524|7589431|15733919" MGI:1915202 RGD:708467 TOMM20 601848 +HGNC:33752 TOMM20L translocase of outer mitochondrial membrane 20 like protein-coding gene gene with protein product Approved 14q23.1 14q23.1 UNQ9438 translocase of outer mitochondrial membrane 20 homolog type I translocase of outer mitochondrial membrane 20 homolog (yeast)-like 2008-07-18 2016-02-26 2016-02-26 387990 ENSG00000196860 OTTHUMG00000140323 uc001xdr.2 NM_207377 CCDS9734 Q6UXN7 15733919 MGI:1922516 RGD:1586305 TOMM20L +HGNC:50518 TOMM20P1 TOMM20 pseudogene 1 pseudogene pseudogene Approved 11q13.5 11q13.5 translocase of outer mitochondrial membrane 20 homolog (yeast) pseudogene 1 2014-05-19 2014-12-17 2014-12-17 105369446 ENSG00000224829 OTTHUMG00000165137 NG_046610 PGOHUM00000242811 +HGNC:50519 TOMM20P2 TOMM20 pseudogene 2 pseudogene pseudogene Approved 17q12 17q12 translocase of outer mitochondrial membrane 20 homolog (yeast) pseudogene 2 2014-05-19 2014-12-17 2014-12-17 101927540 ENSG00000255987 OTTHUMG00000168389 PGOHUM00000237036 +HGNC:50520 TOMM20P3 TOMM20 pseudogene 3 pseudogene pseudogene Approved 18p11.22 18p11.22 translocase of outer mitochondrial membrane 20 homolog (yeast) pseudogene 3 2014-05-19 2014-12-17 2014-12-17 106480301 ENSG00000263935 OTTHUMG00000179014 NG_044264 PGOHUM00000234849 +HGNC:50522 TOMM20P4 TOMM20 pseudogene 4 pseudogene pseudogene Approved Xq13.2 Xq13.2 translocase of outer mitochondrial membrane 20 homolog (yeast) pseudogene 4 2014-05-19 2014-12-17 2014-12-17 100129272 ENSG00000230311 OTTHUMG00000021830 NG_030163 PGOHUM00000241843 +HGNC:18002 TOMM22 translocase of outer mitochondrial membrane 22 protein-coding gene gene with protein product Approved 22q13.1 22q13.1 TOM22 translocase of outer mitochondrial membrane 22 homolog (yeast) Translocase of outer mitochondrial membrane complex 1229 2002-04-30 2016-02-26 2016-02-26 56993 ENSG00000100216 OTTHUMG00000150991 uc003awe.4 AB040119 NM_020243 CCDS13975 Q9NS69 "10982837|10900208" MGI:2450248 RGD:1303260 TOMM22 607046 +HGNC:38736 TOMM22P1 TOMM22 pseudogene 1 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-07-29 2014-12-17 2014-12-17 100499416 ENSG00000237427 OTTHUMG00000036539 NG_023455 PGOHUM00000234008 +HGNC:38737 TOMM22P2 TOMM22 pseudogene 2 pseudogene pseudogene Approved Yp11.31 Yp11.31 2010-07-29 2014-12-17 2014-12-17 100499417 ENSG00000232195 OTTHUMG00000036083 NG_023456 PGOHUM00000233890 +HGNC:38739 TOMM22P3 TOMM22 pseudogene 3 pseudogene pseudogene Approved 13q13.1 13q13.1 2010-07-29 2014-12-17 2014-12-17 122038 ENSG00000227604 OTTHUMG00000016705 NG_023453 PGOHUM00000248357 +HGNC:38740 TOMM22P4 TOMM22 pseudogene 4 pseudogene pseudogene Approved 4q32.2 04q32.2 2010-07-29 2014-12-17 2014-12-17 100874517 ENSG00000248396 OTTHUMG00000161382 NG_032214 PGOHUM00000246123 +HGNC:38741 TOMM22P5 TOMM22 pseudogene 5 pseudogene pseudogene Approved 10q26.11 10q26.11 2010-07-29 2014-12-17 2014-12-17 390007 ENSG00000225155 OTTHUMG00000019135 NG_023452 PGOHUM00000238936 +HGNC:38742 TOMM22P6 TOMM22 pseudogene 6 pseudogene pseudogene Approved 3q26.1 03q26.1 2010-07-29 2014-12-17 2014-12-17 100287573 ENSG00000241874 OTTHUMG00000159087 NG_023451 PGOHUM00000237847 +HGNC:15746 TOMM34 translocase of outer mitochondrial membrane 34 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "TOM34|HTOM34P" outer mitochondrial membrane translocase (34kD) Tetratricopeptide repeat domain containing 769 2001-09-17 2016-10-05 10953 ENSG00000025772 OTTHUMG00000032552 uc002xmy.4 U58970 NM_006809 CCDS13340 Q15785 9324309 MGI:1914395 RGD:1309029 TOMM34 616049 +HGNC:18001 TOMM40 translocase of outer mitochondrial membrane 40 protein-coding gene gene with protein product Approved 19q13 19q13 "PEREC1|D19S1177E|C19orf1|TOM40|PER-EC1" translocase of outer mitochondrial membrane 40 homolog (yeast) Translocase of outer mitochondrial membrane complex 1229 2002-02-11 2016-02-26 2016-02-26 10452 ENSG00000130204 OTTHUMG00000180842 uc002ozx.4 AF043250 XM_005258411 CCDS12646 O96008 "10980201|15644312" MGI:1858259 RGD:1303022 TOMM40 608061 +HGNC:25756 TOMM40L translocase of outer mitochondrial membrane 40 like protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "FLJ12770|TOMM40B" "translocase of outer mitochondrial membrane 40 homolog-like (yeast)|translocase of outer mitochondrial membrane 40 homolog (yeast)-like" 2005-07-29 2016-02-26 2016-02-26 84134 ENSG00000158882 OTTHUMG00000034345 uc001fzd.5 NM_032174 "CCDS1227|CCDS65700" Q969M1 MGI:3589112 RGD:1562006 TOMM40L +HGNC:11985 TOMM70 translocase of outer mitochondrial membrane 70 protein-coding gene gene with protein product Approved 3q12.2 03q12.2 "KIAA0719|Tom70" TOMM70A "translocase of outer mitochondrial membrane 70 (yeast) homolog A|translocase of outer mitochondrial membrane 70 homolog A (yeast)|translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" "Tetratricopeptide repeat domain containing|Translocase of outer mitochondrial membrane complex" "769|1229" 2000-01-20 2016-02-26 2016-02-26 2016-02-26 9868 ENSG00000154174 OTTHUMG00000159065 uc003dtw.4 AB018262 NM_014820 CCDS33807 O94826 10582581 MGI:106295 RGD:1303049 606081 +HGNC:7801 TONSL tonsoku-like, DNA repair protein protein-coding gene gene with protein product Approved 8q24.3 08q24.3 IKBR NFKBIL2 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 2 Ankyrin repeat domain containing 403 1995-09-12 2010-11-30 2010-12-02 2014-11-19 4796 ENSG00000160949 OTTHUMG00000153122 uc011llg.3 NM_013432 CCDS34968 Q96HA7 "7738005|11246458" MGI:1919999 RGD:1307483 TONSL 604546 +HGNC:51556 TONSL-AS1 TONSL antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 2015-03-05 2015-03-05 100287098 ENSG00000232600 OTTHUMG00000153175 NR_109770 +HGNC:11986 TOP1 topoisomerase (DNA) I protein-coding gene gene with protein product Approved 20q12 20q12 Topoisomerases 1050 1989-02-23 2015-08-07 2016-10-05 7150 ENSG00000198900 OTTHUMG00000033057 uc002xjl.4 NM_003286 CCDS13312 P11387 MGI:98788 RGD:621246 TOP1 126420 objectId:2636 5.99.1.2 +HGNC:29787 TOP1MT topoisomerase (DNA) I, mitochondrial protein-coding gene gene with protein product Approved 8q24.3 08q24.3 Topoisomerases 1050 2004-07-19 2015-08-07 2015-08-07 116447 ENSG00000184428 OTTHUMG00000164979 uc003yxz.6 AF349018 NM_052963 "CCDS6400|CCDS59115" Q969P6 11526219 MGI:1920210 RGD:1303177 TOP1MT 606387 objectId:2759 +HGNC:11987 TOP1P1 topoisomerase (DNA) I pseudogene 1 pseudogene pseudogene Approved 1q24.3 01q24.3 1990-09-10 2015-08-07 2015-08-07 7151 ENSG00000268062 OTTHUMG00000035501 M55632 NR_002719 PGOHUM00000296655 +HGNC:11988 TOP1P2 topoisomerase (DNA) I pseudogene 2 pseudogene pseudogene Approved 22q11.23 22q11.23 1990-09-10 2015-08-07 2015-08-07 7152 M55630 NR_001283 +HGNC:11989 TOP2A topoisomerase (DNA) II alpha protein-coding gene gene with protein product Approved 17q21.2 17q21.2 TOP2 topoisomerase (DNA) II alpha 170kDa Topoisomerases 1050 1989-03-23 2015-08-07 2015-09-08 7153 ENSG00000131747 OTTHUMG00000155008 uc002huq.4 NM_001067 CCDS45672 P11388 MGI:98790 RGD:62048 TOP2A 126430 353516 objectId:2637 5.99.1.2 +HGNC:11990 TOP2B topoisomerase (DNA) II beta protein-coding gene gene with protein product Approved 3p24.2 03p24.2 topoisomerase (DNA) II beta 180kDa Topoisomerases 1050 1992-03-20 2015-08-07 2015-09-08 7155 ENSG00000077097 OTTHUMG00000155596 uc003cdj.4 X68060 XM_005265427 "CCDS46776|CCDS82746" Q02880 "1309226|1333583" MGI:98791 RGD:1586156 TOP2B 126431 5.99.1.3 +HGNC:11992 TOP3A topoisomerase (DNA) III alpha protein-coding gene gene with protein product Approved 17p11.2 17p11.2 ZGRF7 zinc finger, GRF-type containing 7 TOP3 "Zinc fingers GRF-type|Topoisomerases" "135|1050" 1999-03-18 2015-08-07 2015-08-07 7156 ENSG00000177302 OTTHUMG00000059391 uc002gsx.1 U43431 NM_004618 CCDS11194 Q13472 9450867 MGI:1197527 RGD:1309320 TOP3A 601243 5.99.1.2 +HGNC:11993 TOP3B topoisomerase (DNA) III beta protein-coding gene gene with protein product Approved 22q11.22 22q11.22 Topoisomerases 1050 1999-03-18 2015-08-07 2015-08-07 8940 ENSG00000100038 OTTHUMG00000167438 uc002zvt.6 AF017146 NM_003935 CCDS13797 O95985 "9786842|9074928" MGI:1333803 RGD:1309468 TOP3B 603582 +HGNC:11994 TOP3BP1 topoisomerase (DNA) III beta pseudogene 1 pseudogene pseudogene Approved 22q11.22 22q11.22 TOP3B2 topoisomerase (DNA) III beta, 2 1999-10-29 2012-01-13 2015-08-07 2015-08-07 23751 ENSG00000228050 OTTHUMG00000151044 NG_000002 10591208 PGOHUM00000246269 +HGNC:24746 TOPAZ1 testis and ovary specific PAZ domain containing 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ36157 C3orf77 chromosome 3 open reading frame 77 2009-06-12 2012-10-08 2012-10-08 2016-10-05 375337 ENSG00000173769 OTTHUMG00000156172 uc003cna.4 AK093476 NM_001145030 CCDS46809 Q8N9V7 22069478 MGI:3779933 RGD:1563398 614412 +HGNC:17008 TOPBP1 topoisomerase (DNA) II binding protein 1 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 "KIAA0259|TOP2BP1" BRCA1 B complex 1335 2004-06-21 2015-08-07 2015-08-07 11073 ENSG00000163781 OTTHUMG00000159773 uc003eps.4 AB019397 NM_007027 CCDS46919 Q92547 "9461304|9039502" MGI:1920018 RGD:1562949 TOPBP1 607760 +HGNC:21653 TOPORS TOP1 binding arginine/serine rich protein protein-coding gene gene with protein product Approved 9p21.1 09p21.1 "TP53BPL|LUN" RP31 "retinitis pigmentosa 31 (autosomal dominant)|topoisomerase I binding, arginine/serine-rich, E3 ubiquitin protein ligase" Ring finger proteins 58 2003-07-07 2016-04-19 2016-10-05 10210 ENSG00000197579 OTTHUMG00000019743 uc003zrb.4 AF098300 NM_005802 "CCDS6527|CCDS56566" Q9NS56 "10352183|12083797|17924349" MGI:2146189 RGD:1305270 TOPORS 609507 159443 +HGNC:31420 TOPORS-AS1 TOPORS antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p21.1 09p21.1 C9orf133 "chromosome 9 open reading frame 133|TOPORS antisense RNA 1 (non-protein coding)" 2005-03-22 2012-04-03 2012-08-15 2014-11-19 100129250 ENSG00000235453 OTTHUMG00000019742 uc031tdl.2 NR_033991 +HGNC:50276 TOPORSLP1 topoisomerase I binding, arginine and serine rich like, pseudogene 1 pseudogene pseudogene Approved 9q31.1 09q31.1 TOPORSLP "topoisomerase I binding, arginine/serine-rich like, pseudogene|topoisomerase I binding, arginine/serine-rich like, pseudogene 1" 2014-03-25 2015-08-07 2016-06-06 2016-06-06 347281 ENSG00000242111 OTTHUMG00000020402 NG_021672 MGI:1915524 PGOHUM00000304426 +HGNC:3098 TOR1A torsin family 1 member A protein-coding gene gene with protein product Approved 9q34.11 09q34.11 DQ2 torsin A DYT1 "dystonia 1, torsion (autosomal dominant; torsin A)|torsin family 1, member A (torsin A)" 1987-09-11 2004-11-26 2016-01-25 2016-10-12 1861 ENSG00000136827 OTTHUMG00000020794 uc004byl.4 AF007871 NM_000113 CCDS6930 O14656 10644435 MGI:1353568 RGD:628863 LRG_1029|http://www.lrg-sequence.org/LRG/LRG_1029 TOR1A 605204 120201 +HGNC:29456 TOR1AIP1 torsin 1A interacting protein 1 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "LAP1B|FLJ13142" lamina associated polypeptide 1B torsin A interacting protein 1 2005-06-07 2016-01-26 2016-10-05 26092 ENSG00000143337 OTTHUMG00000035257 uc001gnq.5 NM_015602 "CCDS1335|CCDS65737" Q5JTV8 "12061773|15767459" MGI:3582693 RGD:628851 TOR1AIP1 614512 432014 +HGNC:24055 TOR1AIP2 torsin 1A interacting protein 2 protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "LULL1|NET9|IFRG15" torsin A interacting protein 2 2005-06-07 2016-01-26 2016-01-26 163590 ENSG00000169905 OTTHUMG00000035265 uc001gnn.4 NM_145034 "CCDS1334|CCDS53439" "Q8NFQ8|Q9H496" 15767459 MGI:3582695 RGD:735059 TOR1AIP2 614513 +HGNC:11995 TOR1B torsin family 1 member B protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "DQ1|MGC4386" torsin B torsin family 1, member B (torsin B) 2000-02-17 2016-01-25 2016-10-05 27348 ENSG00000136816 OTTHUMG00000020795 uc004byk.1 AF007872 NM_014506 CCDS6929 O14657 "9288096|10644435" MGI:1353605 RGD:1308431 TOR1B 608050 +HGNC:11996 TOR2A torsin family 2 member A protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "FLJ14771|TORP1" torsin family 2, member A 2000-02-17 2016-01-25 2016-01-25 27433 ENSG00000160404 OTTHUMG00000020706 uc004brs.5 AA873275 NM_130459 "CCDS6876|CCDS43879|CCDS48024|CCDS48025" "Q5JU69|Q8N2E6" 10644435 MGI:1353596 RGD:1359111 TOR2A 608052 +HGNC:11997 TOR3A torsin family 3 member A protein-coding gene gene with protein product Approved 1q25.2 01q25.2 "FLJ22345|ADIR2" ADIR "ATP-dependant interferon responsive|torsin family 3, member A" Minor histocompatibility antigens 870 2000-02-17 2016-01-25 2016-01-25 64222 ENSG00000186283 OTTHUMG00000035077 uc001gmd.4 BC001085 NM_022371 CCDS1329 Q9H497 10644435 MGI:1353652 RGD:1310101 TOR3A 607555 +HGNC:25981 TOR4A torsin family 4 member A protein-coding gene gene with protein product Approved 9q34.3 09q34.3 FLJ20245 C9orf167 "chromosome 9 open reading frame 167|torsin family 4, member A" 2007-02-08 2012-04-03 2016-01-25 2016-01-25 54863 ENSG00000198113 OTTHUMG00000131779 uc004cmn.4 AK023361 NM_017723 CCDS7041 Q9NXH8 MGI:2442720 RGD:1308019 +HGNC:18988 TOX thymocyte selection associated high mobility group box protein-coding gene gene with protein product Approved 8q12.1 08q12.1 "KIAA0808|TOX1" 2007-03-20 2015-11-16 2016-10-05 9760 ENSG00000198846 OTTHUMG00000164331 uc003xtw.1 NM_014729 CCDS34897 O94900 "9872452|11850626" MGI:2181659 RGD:1310455 The Globin Gene Server|http://lovd.bx.psu.edu/home.php?select_db=TOX TOX 606863 +HGNC:16095 TOX2 TOX high mobility group box family member 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ1108D11.2|GCX-1" granulosa cell HMG box 1 C20orf100 chromosome 20 open reading frame 100 2001-07-17 2007-03-20 2007-03-20 2015-08-26 84969 ENSG00000124191 uc010ggo.4 BC007636 XR_001754425 "CCDS13324|CCDS42875|CCDS46603" Q96NM4 14764631 MGI:3611233 RGD:735184 TOX2 611163 +HGNC:11972 TOX3 TOX high mobility group box family member 3 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 CAGF9 TNRC9 trinucleotide repeat containing 9 Trinucleotide repeat containing 775 2000-01-27 2007-03-20 2007-03-20 2014-11-18 27324 ENSG00000103460 OTTHUMG00000173222 uc002egw.3 U80736 XM_049037 "CCDS54008|CCDS54009" O15405 9225980 MGI:3039593 RGD:1311529 TOX3 611416 +HGNC:20161 TOX4 TOX high mobility group box family member 4 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 LCP1 "C14orf92|KIAA0737" "chromosome 14 open reading frame 92|KIAA0737" 2002-12-19 2007-03-20 2007-03-20 2014-11-19 9878 ENSG00000092203 OTTHUMG00000150278 uc058zcl.1 AB018280 NM_014828 CCDS32043 O94842 MGI:1915389 RGD:708449 TOX4 614032 +HGNC:44009 TOX4P1 TOX high mobility group box family member 4 pseudogene 1 pseudogene pseudogene Approved 4q25 04q25 2012-05-28 2012-05-28 285412 ENSG00000248697 OTTHUMG00000161064 NG_022072 PGOHUM00000246033 +HGNC:11998 TP53 tumor protein p53 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "p53|LFS1" Li-Fraumeni syndrome 1986-01-01 2008-01-16 2016-10-12 7157 ENSG00000141510 OTTHUMG00000162125 uc060aur.1 AF307851 NM_000546 "CCDS11118|CCDS45605|CCDS45606|CCDS73963|CCDS73964|CCDS73965|CCDS73966|CCDS73967|CCDS73968|CCDS73969|CCDS73970|CCDS73971" P04637 "6396087|3456488|2047879" MGI:98834 RGD:3889 "IARC TP53 Mutation Database|http://www-p53.iarc.fr/|p53 UMD TP53 mutation database|http://p53.fr/|Database of Germline p53 Mutations|http://www.lf2.cuni.cz/projects/germline_mut_p53.htm|MUTP53LOAD, Mutant p53 Loss Of Activity Database|http://www.umd.be:2072/|LRG_321|http://www.lrg-sequence.org/LRG/LRG_321" TP53 191170 120204 +HGNC:29984 TP53AIP1 tumor protein p53 regulated apoptosis inducing protein 1 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 p53AIP1 2009-03-09 2009-03-09 2016-04-25 63970 ENSG00000120471 OTTHUMG00000165797 uc001qey.5 AB045831 NM_022112 "CCDS55797|CCDS55798|CCDS58195|CCDS8480" Q9HCN2 "11030628|12019168" TP53AIP1 605426 +HGNC:11999 TP53BP1 tumor protein p53 binding protein 1 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "53BP1|p202|TDRD30" tumor protein p53-binding protein, 1 Tudor domain containing 780 2000-06-24 2007-08-02 2016-10-05 7158 ENSG00000067369 OTTHUMG00000059757 uc001zrs.4 U09477 XR_001751382 "CCDS10096|CCDS45250|CCDS45251" Q12888 "8016121|9748285" MGI:1351320 RGD:1308039 TP53BP1 605230 +HGNC:12000 TP53BP2 tumor protein p53 binding protein 2 protein-coding gene gene with protein product Approved 1q41 01q41 "PPP1R13A|ASPP2|53BP2" tumor protein p53-binding protein, 2 "Ankyrin repeat domain containing|Protein phosphatase 1 regulatory subunits" "403|694" 1997-06-24 2014-06-24 2014-11-19 7159 ENSG00000143514 OTTHUMG00000037379 uc010pvb.3 U09582 "NM_001031685|NM_005426" "CCDS1538|CCDS44319" Q13625 "8668206|8016121" MGI:2138319 RGD:1305461 TP53BP2 602143 +HGNC:16328 TP53BP2P1 tumor protein p53 binding protein 2 pseudogene 1 pseudogene pseudogene Approved 8p21.3 08p21.3 PPP1R13AP protein phosphatase 1, regulatory (inhibitor) subunit 13A pseudogene 2001-08-08 2011-10-04 2015-03-17 2015-03-17 94299 11948623 +HGNC:43652 TP53COR1 tumor protein p53 pathway corepressor 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 6p21.2 06p21.2 "linc-p21|lincRNA-p21|Trp53cor1" Long non-coding RNAs 788 2015-03-25 2015-03-25 102800311 CD515754 "20673990|22841487|24381249" MGI:3801771 616343 214 +HGNC:19373 TP53I3 tumor protein p53 inducible protein 3 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 PIG3 2003-03-20 2015-09-08 9540 ENSG00000115129 OTTHUMG00000090817 uc002rey.2 AF010309 NM_004881 "CCDS1708|CCDS56112" Q53FA7 "11919562|10840161|19349281" RGD:1304982 TP53I3 605171 +HGNC:16842 TP53I11 tumor protein p53 inducible protein 11 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 PIG11 2003-03-20 2015-08-26 9537 ENSG00000175274 OTTHUMG00000165714 uc031pzy.1 AF010315 NM_006034 CCDS7911 O14683 9305847 MGI:2670995 RGD:1308395 TP53I11 +HGNC:25102 TP53I13 tumor protein p53 inducible protein 13 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 DSCP1 2006-01-16 2014-11-19 90313 ENSG00000167543 OTTHUMG00000179723 uc002hee.4 AK075341 NM_138349 CCDS42289 Q8NBR0 14767535 MGI:1915125 RGD:1559818 TP53I13 +HGNC:18022 TP53INP1 tumor protein p53 inducible nuclear protein 1 protein-coding gene gene with protein product Approved 8q22 08q22 "DKFZp434M1317|FLJ22139|P53DINP1|SIP|TP53INP1A|TP53INP1B|Teap" 2002-01-21 2004-03-11 94241 ENSG00000164938 OTTHUMG00000164697 uc003yhg.4 AF409115 XM_011517386 "CCDS6265|CCDS47899" Q96A56 "11511362|12438758" MGI:1926609 RGD:631423 TP53INP1 606185 +HGNC:16104 TP53INP2 tumor protein p53 inducible nuclear protein 2 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "FLJ21759|FLJ23500|DKFZp434B2411|DKFZp434O0827|dJ1181N3.1|PINH|DOR" diabetes and obesity regulated C20orf110 chromosome 20 open reading frame 110 2001-07-17 2004-06-18 2004-06-18 2015-08-26 58476 ENSG00000078804 OTTHUMG00000032310 uc002xau.2 AL109824 NM_021202 CCDS13240 Q8IXH6 12477932 MGI:1915978 RGD:735085 TP53INP2 +HGNC:16197 TP53RK TP53 regulating kinase protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ101A2.2|prpk|Nori-2p|BUD32" C20orf64 chromosome 20 open reading frame 64 2001-07-17 2004-05-12 2004-05-10 2016-10-05 112858 ENSG00000172315 OTTHUMG00000085887 uc002xsk.4 NM_033550 CCDS13401 Q96S44 "11546806|12914926" MGI:1918294 RGD:1304911 TP53RK 608679 objectId:2248 +HGNC:17026 TP53TG1 TP53 target 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 7q21.12 07q21.12 "H_RG012D21.9|LINC00096" "TP53 target gene 1|long intergenic non-protein coding RNA 96" TP53AP1 TP53 activated protein 1 Long non-coding RNAs 788 2003-08-12 2008-09-03 2008-09-03 2016-10-05 11257 ENSG00000182165 OTTHUMG00000130822 uc003uip.5 AB007455 NR_015381 Q9Y2A0 9713990 TP53TG1 616403 +HGNC:30759 TP53TG3 TP53 target 3 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "P53TG3|TP53TG3A" p53 target gene 3 2008-09-18 2015-06-09 24150 ENSG00000183632 OTTHUMG00000176507 uc002edd.5 AB023509 NM_016212 CCDS45475 Q9ULZ0 10534768 +HGNC:37202 TP53TG3B TP53 target 3B protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2009-09-22 2015-06-09 729355 ENSG00000261509 OTTHUMG00000176461 uc010caz.4 BC096733 NM_001099687 CCDS45477 Q9ULZ0 TP53TG3B +HGNC:42962 TP53TG3C TP53 target 3C protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2012-01-12 2015-06-09 653550 ENSG00000205457 OTTHUMG00000176458 uc032dyd.2 NM_001205259 CCDS58458 Q9ULZ0 TP53TG3C +HGNC:44657 TP53TG3D TP53 target 3D protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2012-12-11 2015-06-09 729264 ENSG00000205456 OTTHUMG00000132469 uc021tgy.2 NM_001243722 CCDS58456 Q9ULZ0 +HGNC:51816 TP53TG3E TP53 target 3 family member E protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2015-06-12 2016-01-15 102724101 ENSG00000275034 OTTHUMG00000189337 XM_017023950 CCDS81974 Q9ULZ0 +HGNC:51817 TP53TG3F TP53 target 3 family member F protein-coding gene gene with protein product Approved 16p11.2 16p11.2 2015-06-12 2016-01-15 102724127 ENSG00000278848 OTTHUMG00000189349 XM_017023955 CCDS81976 Q9ULZ0 +HGNC:51818 TP53TG3GP TP53 target 3 family member G, pseudogene pseudogene pseudogene Approved 2015-06-12 2015-06-12 106660619 ENSG00000261274 OTTHUMG00000176240 NG_044941 +HGNC:51819 TP53TG3HP TP53 target 3 family member H, pseudogene pseudogene pseudogene Approved 2015-06-12 2015-06-12 100130700 ENSG00000269622 OTTHUMG00000176011 NR_034018 +HGNC:15856 TP53TG5 TP53 target 5 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "CLG01|dJ453C12.5" C20orf10 chromosome 20 open reading frame 10 2001-06-21 2008-09-18 2008-09-18 2015-08-26 27296 ENSG00000124251 OTTHUMG00000032582 uc002xny.4 AB017802 NM_014477 CCDS13352 Q9Y2B4 MGI:1920853 RGD:1561934 TP53TG5 +HGNC:15979 TP63 tumor protein p63 protein-coding gene gene with protein product Approved 3q28 03q28 "p51|SHFM4|EEC3|p63|p73L|OFC8|KET|p73H|NBP|p53CP" "TP73L|TP53L|TP53CP" "tumor protein p73-like|tumor protein p53-like|tumor protein p53-competing protein" 2002-04-18 2016-10-12 8626 ENSG00000073282 OTTHUMG00000156313 uc003fsc.3 AB010153 NM_003722 "CCDS3293|CCDS46976|CCDS46977|CCDS46978|CCDS46979|CCDS46980|CCDS82887" Q9H3D4 "9774969|9662378|11181441|11181451" MGI:1330810 RGD:620863 "ARVD/C Genetic Variants Database|http://grenada.lumc.nl/LOVD2/ARVC/home.php?select_db=TP63|LRG_428|http://www.lrg-sequence.org/LRG/LRG_428" TP63 603273 120207 +HGNC:12003 TP73 tumor protein p73 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 P73 1997-11-12 2016-10-05 7161 ENSG00000078900 OTTHUMG00000000610 uc001akp.4 AB055065 NM_005427 "CCDS49|CCDS44049|CCDS44050|CCDS44051|CCDS55566|CCDS55567|CCDS55568|CCDS55569|CCDS59965" O15350 "9296498|9288759" MGI:1336991 RGD:1307083 TP73 601990 440324 +HGNC:29052 TP73-AS1 TP73 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.32 01p36.32 PDAM p53-dependent apoptosis modulator KIAA0495 KIAA0495 2009-06-19 2014-01-20 2014-01-20 2014-11-19 57212 ENSG00000227372 OTTHUMG00000003414 uc009vlm.4 NR_033708 Q9UF72 "9455484|20477830|23726844" +HGNC:12004 TPBG trophoblast glycoprotein protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "5T4-AG|5T4" 1990-10-16 2016-10-05 7162 ENSG00000146242 OTTHUMG00000015103 uc063ptt.1 AJ012159 XM_011536097 CCDS4995 Q13641 8132670 MGI:1341264 RGD:621453 TPBG 190920 +HGNC:44159 TPBGL trophoblast glycoprotein-like protein-coding gene gene with protein product Approved 11q13.4 11q13.4 2012-07-02 2015-08-26 100507050 ENSG00000261594 OTTHUMG00000165441 uc021qnk.2 BC007804 NM_001195528 CCDS60895 P0DKB5 MGI:3646425 RGD:1596774 +HGNC:18182 TPCN1 two pore segment channel 1 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 "KIAA1169|FLJ20612|TPC1" Two pore segment channels 247 2003-04-10 2016-10-05 53373 ENSG00000186815 OTTHUMG00000169625 uc001tuw.4 AB032995 NM_017901 "CCDS31908|CCDS44985|CCDS76605" Q9ULQ1 "10574461|10753632|16382101" MGI:2182472 RGD:708494 TPCN1 609666 objectId:392 +HGNC:20820 TPCN2 two pore segment channel 2 protein-coding gene gene with protein product Approved 11q13.3 11q13.3 TPC2 Two pore segment channels 247 2003-04-10 2016-10-05 219931 ENSG00000162341 OTTHUMG00000167898 uc001oos.3 AK023366 NM_139075 CCDS8189 Q8NHX9 16382101 MGI:2385297 RGD:1311779 TPCN2 612163 objectId:393 +HGNC:12005 TPD52 tumor protein D52 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "D52|hD52|N8L" 1996-04-30 2015-08-26 7163 ENSG00000076554 OTTHUMG00000164565 uc003ybr.3 U18914 NM_005079 "CCDS34912|CCDS47879|CCDS55249|CCDS75757|CCDS75758|CCDS75759" P55327 7796418 MGI:107749 RGD:1306767 TPD52 604068 +HGNC:12006 TPD52L1 tumor protein D52-like 1 protein-coding gene gene with protein product Approved 6q22-q23 06q22-q23 "D53|hD53" 1996-04-30 2015-08-26 7164 ENSG00000111907 OTTHUMG00000015505 uc003pzu.2 U44427 XM_017011237 "CCDS5130|CCDS34527|CCDS34528|CCDS43502|CCDS75513|CCDS75514|CCDS83122" Q16890 "8812487|16112108" MGI:1298386 RGD:1594796 TPD52L1 604069 +HGNC:12007 TPD52L2 tumor protein D52 like 2 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "D54|hD54" tumor protein D52-like 2 1998-04-02 2016-04-06 2016-10-05 7165 ENSG00000101150 OTTHUMG00000033009 uc002ygz.4 AF004430 XM_011529034 "CCDS13540|CCDS13541|CCDS13542|CCDS13543|CCDS13544|CCDS13545|CCDS58785|CCDS74752|CCDS74753" O43399 9484778 MGI:1913564 RGD:735167 TPD52L2 603747 +HGNC:23382 TPD52L3 tumor protein D52 like 3 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 NYD-SP25 tumor protein D52-like 3 2005-11-22 2016-07-25 2016-07-25 89882 ENSG00000170777 OTTHUMG00000019518 uc003zjw.4 AY032877 NM_033516 "CCDS34984|CCDS34985|CCDS34986" Q96J77 MGI:1913995 RGD:1309391 TPD52L3 +HGNC:25058 TPGS1 tubulin polyglutamylase complex subunit 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "GTRGEO22|PGs1" C19orf20 chromosome 19 open reading frame 20 2004-03-16 2011-11-23 2011-11-23 2014-11-19 91978 ENSG00000141933 OTTHUMG00000180557 uc002lou.5 BC009520 NM_033513 CCDS42454 Q6ZTW0 "11441184|12972506" MGI:106618 RGD:1588613 +HGNC:24561 TPGS2 tubulin polyglutamylase complex subunit 2 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "DKFZP586M1523|HsT3006" C18orf10 chromosome 18 open reading frame 10 2004-01-08 2011-11-25 2011-11-25 2011-11-25 25941 ENSG00000134779 OTTHUMG00000178075 uc002kzw.3 BC015178 NM_015476 "CCDS32817|CCDS62421|CCDS62422|CCDS62423|CCDS62424|CCDS74214|CCDS74215|CCDS82248" Q68CL5 12477932 MGI:1913898 RGD:1310571 TPGS2 +HGNC:12008 TPH1 tryptophan hydroxylase 1 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 tryptophan 5-monooxygenase "TPRH|TPH" tryptophan hydroxylase (tryptophan 5-monooxygenase) 2001-06-22 2003-04-04 2008-07-31 2016-10-05 7166 ENSG00000129167 OTTHUMG00000166421 uc001mnp.3 X52836 NM_004179 CCDS7829 P17752 1463016 MGI:98796 RGD:3895 TPH1 191060 objectId:1241 1.14.16.4 +HGNC:20692 TPH2 tryptophan hydroxylase 2 protein-coding gene gene with protein product Approved 12q21.1 12q21.1 "NTPH|FLJ37295" tryptophan 5-monooxygenase 2003-04-03 2016-10-05 121278 ENSG00000139287 OTTHUMG00000169677 uc009zrw.1 AY098914 NM_173353 CCDS31859 Q8IWU9 12511643 MGI:2651811 RGD:631332 TPH2 607478 objectId:1242 1.14.16.4 +HGNC:12009 TPI1 triosephosphate isomerase 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 2001-06-22 2015-08-26 7167 ENSG00000111669 OTTHUMG00000133767 uc058kmn.1 NM_000365 "CCDS8566|CCDS53740|CCDS58206" P60174 MGI:98797 RGD:3896 TPI1 190450 120218 5.3.1.1 +HGNC:35449 TPI1P1 triosephosphate isomerase 1 pseudogene 1 pseudogene pseudogene Approved 1p31.1 01p31.1 2010-04-08 2014-11-19 729708 ENSG00000226415 OTTHUMG00000009616 NG_008262 PGOHUM00000244760 +HGNC:38069 TPI1P2 triosephosphate isomerase 1 pseudogene 2 pseudogene pseudogene Approved 7q32.1 07q32.1 2010-04-08 2014-11-19 286016 ENSG00000230359 OTTHUMG00000158411 NR_002187.2 PGOHUM00000233566 +HGNC:38070 TPI1P3 triosephosphate isomerase 1 pseudogene 3 pseudogene pseudogene Approved 6q22.1 06q22.1 2010-04-08 2014-11-19 728402 ENSG00000186743 OTTHUMG00000015423 NR_027338.1 PGOHUM00000243749 +HGNC:38071 TPI1P4 triosephosphate isomerase 1 pseudogene 4 pseudogene pseudogene Approved 4p11 04p11 2010-04-08 2015-01-28 728629 ENSG00000225455 OTTHUMG00000160137 NG_011550 PGOHUM00000257074 +HGNC:17358 TPK1 thiamin pyrophosphokinase 1 protein-coding gene gene with protein product Approved 7q35 07q35 "HTPK1|PP20" "placental protein 20|thiamine pyrophosphokinase 1|thiamine kinase|thiamine diphosphokinase" 2001-12-13 2016-10-05 27010 ENSG00000196511 OTTHUMG00000152774 uc003weq.3 AB028138 NM_022445 "CCDS5888|CCDS55178" Q9H3S4 11342111 MGI:1352500 RGD:1589408 TPK1 606370 299186 +HGNC:12010 TPM1 tropomyosin 1 (alpha) protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "C15orf13|CMH3" "chromosome 15 open reading frame 13|cardiomyopathy, hypertrophic 3" Tropomyosins 777 1991-07-18 2016-10-12 7168 ENSG00000140416 OTTHUMG00000132803 uc002alh.4 AB209041 NM_001018004 "CCDS10181|CCDS32262|CCDS32263|CCDS32264|CCDS45273|CCDS58368|CCDS58369|CCDS81891|CCDS81892|CCDS81894" P09493 "10343096|8205619" MGI:98809 RGD:3898 "FHC Mutation Database|http://www.angis.org.au/Databases/Heart/heartbreak.html|LRG_387|http://www.lrg-sequence.org/LRG/LRG_387" TPM1 191010 120220 +HGNC:12011 TPM2 tropomyosin 2 (beta) protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "DA1|NEM4" nemaline myopathy type 4 AMCD1 arthrogryposis multiplex congenital, distal, type 1 Tropomyosins 777 1991-07-18 2003-12-02 2016-10-12 7169 ENSG00000198467 OTTHUMG00000019878 uc064syd.1 NM_003289 "CCDS6586|CCDS6587|CCDS78394" P07951 7606936 MGI:98810 RGD:1559479 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=TPM2|LRG_680|http://www.lrg-sequence.org/LRG/LRG_680" TPM2 190990 120223 +HGNC:12012 TPM3 tropomyosin 3 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 TRK NEM1 Tropomyosins 777 1991-07-18 2016-10-12 7170 ENSG00000143549 OTTHUMG00000035853 uc001fec.3 BC008425 NM_152263 "CCDS1060|CCDS41400|CCDS41401|CCDS41402|CCDS41403|CCDS60274|CCDS60275|CCDS72922" P06753 1829807 MGI:1890149 RGD:621546 "Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=TPM3|LRG_681|http://www.lrg-sequence.org/LRG/LRG_681" TPM3 191030 120227 +HGNC:16350 TPM3P1 tropomyosin 3 pseudogene 1 pseudogene pseudogene Approved 7q31.2 07q31.2 TPM3L2 "tropomyosin 3-like 2|tropomyosin 3-like 2 pseudogene" 2002-07-22 2010-10-27 2010-10-27 2016-10-05 252956 ENSG00000213050 OTTHUMG00000033986 AF458661 NG_005722 3024106 PGOHUM00000232970 +HGNC:16556 TPM3P2 tropomyosin 3 pseudogene 2 pseudogene pseudogene Approved 20q11.22 20q11.22 dJ1125A11.2 TPM5P tropomyosin 5, pseudogene 2001-09-17 2010-10-27 2010-10-27 2010-10-27 170555 ENSG00000214200 OTTHUMG00000032281 AL034549 NG_001060 PGOHUM00000247515 +HGNC:39166 TPM3P3 tropomyosin 3 pseudogene 3 pseudogene pseudogene Approved 8q21 08q21 2010-10-27 2010-10-27 106478937 ENSG00000254195 OTTHUMG00000164614 NG_043632 PGOHUM00000249728 +HGNC:39167 TPM3P4 tropomyosin 3 pseudogene 4 pseudogene pseudogene Approved 7p15.2 07p15.2 2010-10-27 2010-10-27 402643 ENSG00000214869 OTTHUMG00000033540 NG_005723 +HGNC:39168 TPM3P5 tropomyosin 3 pseudogene 5 pseudogene pseudogene Approved 19q13.2 19q13.2 2010-10-27 2010-10-27 644330 NG_005726 PGOHUM00000234701 +HGNC:39169 TPM3P6 tropomyosin 3 pseudogene 6 pseudogene pseudogene Approved 19q13.42 19q13.42 2010-10-27 2010-10-27 653758 ENSG00000250731 OTTHUMG00000163081 NG_005727 PGOHUM00000234773 +HGNC:39170 TPM3P7 tropomyosin 3 pseudogene 7 pseudogene pseudogene Approved 2p23.3 02p23.3 2010-10-27 2010-10-27 751599 ENSG00000187536 OTTHUMG00000152172 NG_005721 PGOHUM00000239993 +HGNC:39171 TPM3P8 tropomyosin 3 pseudogene 8 pseudogene pseudogene Approved 2q37.1 02q37.1 2010-10-27 2010-10-27 646839 ENSG00000183022 OTTHUMG00000153766 NG_005720 PGOHUM00000240545 +HGNC:44142 TPM3P9 tropomyosin 3 pseudogene 9 pseudogene pseudogene Approved 19q13.42 19q13.42 2012-06-30 2012-07-04 147804 ENSG00000241015 OTTHUMG00000157312 NR_003148 +HGNC:12013 TPM4 tropomyosin 4 protein-coding gene gene with protein product Approved 19p13.12-p13.11 19p13.12-p13.11 Tropomyosins 777 1991-07-18 2016-10-11 7171 ENSG00000167460 OTTHUMG00000182134 uc002ndi.3 NM_003290 "CCDS12338|CCDS46007" P67936 8641132 MGI:2449202 RGD:3899 TPM4 600317 357453 +HGNC:45234 TPM4P1 tropomyosin 4 pseudogene 1 pseudogene pseudogene Approved 10q24.31 10q24.31 2013-03-11 2016-10-05 644566 ENSG00000232230 OTTHUMG00000018905 NG_022157 PGOHUM00000238610 +HGNC:12014 TPMT thiopurine S-methyltransferase protein-coding gene gene with protein product Approved 6p22.3 06p22.3 1993-08-25 2016-10-12 7172 ENSG00000137364 OTTHUMG00000014317 uc003ncm.4 XM_017011241 CCDS4543 P51580 8316220 MGI:98812 RGD:1585162 LRG_874|http://www.lrg-sequence.org/LRG/LRG_874 TPMT 187680 120231 2.1.1.67 +HGNC:17490 TPMTP1 thiopurine S-methyltransferase pseudogene 1 pseudogene pseudogene Approved 18q21.1 18q21.1 2005-09-14 2012-11-15 400650 ENSG00000267156 OTTHUMG00000180321 U11424 NG_004077 7628307 PGOHUM00000235052 +HGNC:44565 TPMTP2 thiopurine S-methyltransferase pseudogene 2 pseudogene pseudogene Approved 3p22.1 03p22.1 2012-11-15 2012-11-15 100420393 ENSG00000234562 OTTHUMG00000156196 NG_025569 PGOHUM00000237600 +HGNC:44566 TPMTP3 thiopurine S-methyltransferase pseudogene 3 pseudogene pseudogene Approved Xp11.22 Xp11.22 2012-11-15 2012-11-15 100129277 ENSG00000232562 OTTHUMG00000021544 NG_022601 PGOHUM00000241300 +HGNC:44567 TPMTP4 thiopurine S-methyltransferase pseudogene 4 pseudogene pseudogene Approved Xq21.2 Xq21.2 2012-11-15 2012-11-15 100129298 ENSG00000223574 OTTHUMG00000021940 NG_022616 PGOHUM00000241424 +HGNC:12015 TPO thyroid peroxidase protein-coding gene gene with protein product Approved 2p25.3 02p25.3 TPX Sushi domain containing 1179 1986-01-01 2016-10-05 7173 ENSG00000115705 OTTHUMG00000090271 uc002qww.4 NM_000547 "CCDS1643|CCDS1644|CCDS1646" P07202 MGI:98813 RGD:3900 TPO 606765 120233 objectId:2526 1.11.1.7 +HGNC:2073 TPP1 tripeptidyl peptidase 1 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 TPP I "CLN2|SCAR7" "ceroid-lipofuscinosis, neuronal 2, late infantile (Jansky-Bielschowsky disease)|spinocerebellar ataxia, autosomal recessive 7|tripeptidyl peptidase I" 1990-01-30 2004-12-10 2016-04-05 2016-10-12 1200 ENSG00000166340 OTTHUMG00000133404 uc001mel.2 AF017456 NM_000391 CCDS7770 O14773 "9653647|23418007" MGI:1336194 RGD:621296 "Neuronal Ceroid Lipofuscinoses; NCL Mutations|http://www.ucl.ac.uk/ncl/|LRG_830|http://www.lrg-sequence.org/LRG/LRG_830" TPP1 607998 120236 S53.003 +HGNC:12016 TPP2 tripeptidyl peptidase 2 protein-coding gene gene with protein product Approved 13q33.1 13q33.1 TPPII tripeptidyl peptidase II 1993-02-23 2016-04-05 2016-10-05 7174 ENSG00000134900 OTTHUMG00000017305 uc001vpi.5 M55169 XR_001749654 "CCDS9502|CCDS81777" P29144 1670990 MGI:102724 RGD:621584 TPP2 190470 448714 S08.A56 objectId:2423 3.4.14.10 +HGNC:24164 TPPP tubulin polymerization promoting protein protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "p25alpha|TPPP1|p25|TPPP/p25" brain specific protein p25 alpha Tubulin polymerization promoting proteins 1240 2007-05-02 2014-11-19 11076 ENSG00000171368 OTTHUMG00000131011 uc003jbh.4 AB017016 NM_007030 CCDS3856 O94811 "10083737|12093283|15590652|17105200" MGI:1920198 RGD:1310121 TPPP 608773 +HGNC:19293 TPPP2 tubulin polymerization promoting protein family member 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "p25beta|p18|CT152" C14orf8 chromosome 14 open reading frame 8 Tubulin polymerization promoting proteins 1240 2003-10-02 2007-05-02 2016-03-24 2016-03-24 122664 ENSG00000179636 OTTHUMG00000171071 uc001vzh.4 AY072034 NM_173846 CCDS9566 P59282 "15590652|17105200" MGI:2684923 RGD:1566185 TPPP2 616956 +HGNC:24162 TPPP3 tubulin polymerization promoting protein family member 3 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "CGI-38|p25gamma|p20" Tubulin polymerization promoting proteins 1240 2007-05-02 2016-03-24 2016-03-24 51673 ENSG00000159713 OTTHUMG00000137516 uc002etb.5 BC000691 NM_015964 CCDS10835 Q9BW30 "15590652|17105200" MGI:1915221 RGD:1305061 TPPP3 616957 +HGNC:12017 TPR translocated promoter region, nuclear basket protein protein-coding gene gene with protein product Approved 1q31.1 01q31.1 translocated promoter region (to activated MET oncogene) Nucleoporins 1051 1991-11-21 2012-03-13 2016-10-05 7175 ENSG00000047410 OTTHUMG00000035580 uc001grv.4 U69668 NM_003292 CCDS41446 P12270 "1611909|15229283" MGI:1922066 RGD:1310664 TPR 189940 120239 +HGNC:30413 TPRA1 transmembrane protein adipocyte associated 1 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "TPRA40|FLJ32197|TMEM227" transmembrane protein 227 GPR175 "G protein-coupled receptor 175|transmembrane protein, adipocyte asscociated 1" 7TM orphan receptors 310 2005-01-21 2009-07-08 2016-01-27 2016-10-05 131601 ENSG00000163870 OTTHUMG00000159639 uc062nlu.1 AK056759 NM_016372 "CCDS3042|CCDS46899" Q86W33 10342878 MGI:1345190 RGD:620858 TPRA1 608336 objectId:655 +HGNC:24759 TPRG1 tumor protein p63 regulated 1 protein-coding gene gene with protein product Approved 3q28 03q28 "FLJ41238|FLJ43694" FAM79B family with sequence similarity 79, member B 2005-07-21 2008-01-16 2008-01-16 2014-11-19 285386 ENSG00000188001 OTTHUMG00000156321 uc003frv.3 AK125682 NM_198485 CCDS3292 Q6ZUI0 MGI:1918588 RGD:1306226 TPRG1 +HGNC:42391 TPRG1-AS1 TPRG1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q28 03q28 TPRG1 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-18 100874043 ENSG00000234076 OTTHUMG00000156324 uc062riq.1 NR_046873 +HGNC:41062 TPRG1-AS2 TPRG1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q28 03q28 TPRG1 antisense RNA 2 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100874027 ENSG00000230115 OTTHUMG00000156323 uc031scu.1 NR_046722 +HGNC:27007 TPRG1L tumor protein p63 regulated 1 like protein-coding gene gene with protein product Approved 1p36.32 01p36.32 "RP11-46F15.3|FLJ21811" FAM79A family with sequence similarity 79, member A 2005-07-21 2008-01-16 2016-07-27 2016-07-27 127262 ENSG00000158109 OTTHUMG00000000609 uc001akm.4 BC019034 NM_182752 CCDS47 Q5T0D9 12477932 MGI:1915058 RGD:1590079 TPRG1L 611460 +HGNC:52353 TPRG1LP1 tumor protein p63 regulated 1 like pseudogene 1 pseudogene pseudogene Approved 19q13.43 19q13.43 2016-07-28 2016-07-28 100130490 ENSG00000269097 OTTHUMG00000183473 NG_021767 PGOHUM00000295488 +HGNC:24259 TPRKB TP53RK binding protein protein-coding gene gene with protein product Approved 2p13.1 02p13.1 "CGI-121|CGI121" 2006-02-02 2016-07-01 51002 ENSG00000144034 OTTHUMG00000129815 uc002sjn.3 AY157986 NM_016058 "CCDS1927|CCDS82471" Q9Y3C4 "10810093|12659830" MGI:1917036 RGD:1309786 TPRKB 608680 +HGNC:44943 TPRKBP1 TP53RK binding protein pseudogene 1 pseudogene pseudogene Approved 10p12.1 10p12.1 2012-12-19 2014-02-12 101060176 ENSG00000231911 OTTHUMG00000017873 NG_051485 PGOHUM00000238706 +HGNC:44944 TPRKBP2 TP53RK binding protein pseudogene 2 pseudogene pseudogene Approved 16p11.2 16p11.2 2012-12-19 2012-12-19 106480804 ENSG00000260452 OTTHUMG00000176815 NG_045755 PGOHUM00000248771 +HGNC:26894 TPRN taperin protein-coding gene gene with protein product Approved 9q34.3 09q34.3 FLJ90254 "C9orf75|DFNB79" "chromosome 9 open reading frame 75|deafness, autosomal recessive 79" 2004-01-06 2010-03-24 2010-03-24 2014-11-18 286262 ENSG00000176058 OTTHUMG00000020984 uc004clu.4 AK074735 NM_173691 CCDS56594 Q4KMQ1 "20170898|20170899" MGI:2139535 RGD:1562935 TPRN 613354 227071 +HGNC:32174 TPRX1 tetrapeptide repeat homeobox 1 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 FLJ40321 PRD class homeoboxes and pseudogenes 521 2005-08-08 2016-07-13 2016-07-13 284355 ENSG00000178928 OTTHUMG00000170628 uc061aon.1 NM_198479 CCDS33066 Q8N7U7 TPRX1 611166 8550 +HGNC:32176 TPRX1P1 tetrapeptide repeat homeobox 1 pseudogene 1 pseudogene pseudogene Approved 10q22.3 10q22.3 PRD class homeoboxes and pseudogenes 521 2005-08-08 2016-07-13 2016-08-17 503628 ENSG00000259021 OTTHUMG00000171166 NG_004836 8399 PGOHUM00000289916 +HGNC:32175 TPRX2P tetrapeptide repeat homeobox 2, pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 TPRX2P1 PRD class homeoboxes and pseudogenes 521 2005-08-08 2016-07-13 2016-10-05 503627 ENSG00000259009 OTTHUMG00000171165 NG_004835 8401 PGOHUM00000295397 +HGNC:32178 TPRXL tetrapeptide repeat homeobox like pseudogene pseudogene Approved 3p25.1 03p25.1 "FLJ35107|TPRX3P" PRD class homeoboxes and pseudogenes 521 2005-08-08 2016-07-13 2016-07-13 348825 ENSG00000180438 OTTHUMG00000155509 uc062gyf.1 AK092426 NR_002223 Q17RH7 25981829 TPRXL 611167 8551 +HGNC:12019 TPSAB1 tryptase alpha/beta 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "tryptase alpha II|tryptase beta I|tryptase-I|tryptase-II|tryptase-III" "TPSB1|TPS1|TPS2" tryptase beta 1 1990-11-07 2004-10-15 2004-10-14 2015-09-08 7177 ENSG00000172236 OTTHUMG00000090467 uc002ckz.4 M33494 NM_003294 CCDS10431 Q15661 "2203827|9920877" "MGI:96942|MGI:96943" RGD:3066 TPSAB1 191080 S01.143 objectId:2424 +HGNC:14120 TPSB2 tryptase beta 2 (gene/pseudogene) protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "tryptase beta II|tryptase beta III" tryptase beta 2 2000-12-21 2009-11-18 2015-09-08 64499 ENSG00000197253 OTTHUMG00000155926 uc059ovc.1 AF099143 NM_024164 P20231 19748655 "MGI:96942|MGI:96943" RGD:3065 TPSB2 191081 S01.015 +HGNC:14118 TPSD1 tryptase delta 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "mMCP-7-like II|mMCP-7-like I|MMCP-7-LIKE-2" 2000-12-21 2015-09-08 23430 ENSG00000095917 OTTHUMG00000128511 uc002clb.2 AF206664 NM_012217 CCDS10432 Q9BZJ3 9920877 TPSD1 609272 S01.054 3.4.21.59 +HGNC:14134 TPSG1 tryptase gamma 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "TMT|PRSS31" "tryptase gamma II|tryptase gamma I" Proteases, serine 738 2000-12-21 2015-08-26 25823 ENSG00000116176 OTTHUMG00000090466 uc002ckw.3 AF175759 XM_011522446 CCDS10430 Q9NRR2 10521469 MGI:1349391 RGD:631355 TPSG1 609341 S01.028 objectId:2425 +HGNC:14182 TPSP1 tryptase pseudogene 1 pseudogene pseudogene Approved 16p13.3 16p13.3 2000-12-21 2014-11-18 100129339 NG_008445 +HGNC:14136 TPSP2 tryptase pseudogene 2 pseudogene pseudogene Approved 16p13.3 16p13.3 Mastin 2000-12-21 2014-11-19 650474 ENSG00000260284 OTTHUMG00000172998 NG_008446 10843716 PGOHUM00000262267 +HGNC:14127 TPSP3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:12020 TPST1 tyrosylprotein sulfotransferase 1 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 TANGO13A transport and golgi organization 13 homolog A (Drosophila) Sulfotransferases, membrane bound 763 1998-10-14 2014-11-18 8460 ENSG00000169902 OTTHUMG00000023871 uc003tuw.4 AF038009 NM_003596 CCDS5533 O60507 9501187 MGI:1298231 RGD:1308473 TPST1 603125 2.8.2.20 +HGNC:12021 TPST2 tyrosylprotein sulfotransferase 2 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 TANGO13B "transport and golgi organization 13 homolog B (Drosophila)|protein-tyrosine sulfotransferase 2" Sulfotransferases, membrane bound 763 1998-10-14 2015-12-11 8459 ENSG00000128294 OTTHUMG00000150987 uc062cqc.1 AF049891 NM_003595 CCDS13839 O60704 "9736702|9733778" MGI:1309516 RGD:1305331 TPST2 603126 2.8.2.20 +HGNC:44425 TPST2P1 tyrosylprotein sulfotransferase 2 pseudogene 1 pseudogene pseudogene Approved 15q14 15q14 2012-10-08 2015-08-19 100420710 ENSG00000260582 OTTHUMG00000172662 NG_025297 PGOHUM00000292910 +HGNC:12022 TPT1 tumor protein, translationally-controlled 1 protein-coding gene gene with protein product Approved 13q14.13 13q14.13 "TCTP|fortilin" 1992-09-17 2016-10-05 7178 ENSG00000133112 OTTHUMG00000016845 uc001uzy.3 X16064 NM_001286273 "CCDS9397|CCDS66538|CCDS73566" P13693 "2813067|10343127" MGI:104890 RGD:621623 TPT1 600763 +HGNC:43686 TPT1-AS1 TPT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.13 13q14.13 TPT1 antisense RNA 1 (non-protein coding) 2012-01-30 2012-08-15 2012-10-12 100190939 ENSG00000170919 OTTHUMG00000016851 uc058wui.1 AF318337 NR_024458 +HGNC:16742 TPT1P1 tumor protein, translationally-controlled 1 pseudogene 1 pseudogene pseudogene Approved 21q22.11 21q22.11 TPT1P tumor protein, translationally-controlled 1 pseudogene 2003-10-01 2010-08-18 2010-08-18 2014-11-19 100131268 ENSG00000234107 OTTHUMG00000084902 NG_021999 PGOHUM00000258122 +HGNC:49294 TPT1P2 tumor protein, translationally-controlled 1 pseudogene 2 pseudogene pseudogene Approved 2q34 02q34 2013-10-15 2013-10-15 100128483 ENSG00000228111 OTTHUMG00000154803 PGOHUM00000258137 +HGNC:49295 TPT1P3 tumor protein, translationally-controlled 1 pseudogene 3 pseudogene pseudogene Approved 3q23 03q23 2013-10-15 2013-10-15 100421439 ENSG00000241899 OTTHUMG00000159356 NG_025633 PGOHUM00000237796 +HGNC:49298 TPT1P4 tumor protein, translationally-controlled 1 pseudogene 4 pseudogene pseudogene Approved 6q24.2 06q24.2 2013-10-15 2013-10-15 285741 ENSG00000217027 OTTHUMG00000015740 NG_022331 PGOHUM00000243404 +HGNC:49296 TPT1P5 tumor protein, translationally-controlled 1 pseudogene 5 pseudogene pseudogene Approved 5p13.3 05p13.3 2013-10-15 2013-10-15 100421420 ENSG00000214108 OTTHUMG00000160377 NG_024662 PGOHUM00000258199 +HGNC:49297 TPT1P6 tumor protein, translationally-controlled 1 pseudogene 6 pseudogene pseudogene Approved 6q14.3 06q14.3 2013-10-15 2013-10-15 643870 ENSG00000214460 OTTHUMG00000015135 NG_030180 PGOHUM00000243273 +HGNC:49300 TPT1P7 tumor protein, translationally-controlled 1 pseudogene 7 pseudogene pseudogene Approved 7p15.3 07p15.3 2013-10-15 2013-10-15 102723852 ENSG00000231328 OTTHUMG00000152552 NG_042895 PGOHUM00000232618 +HGNC:24088 TPT1P8 tumor protein, translationally-controlled 1 pseudogene 8 pseudogene pseudogene Approved 8p11.23 08p11.23 FKSG2 2013-10-15 2013-10-15 59347 ENSG00000219491 OTTHUMG00000160404 NG_012761 Q9HAU6 PGOHUM00000250024 +HGNC:49299 TPT1P9 tumor protein, translationally-controlled 1 pseudogene 9 pseudogene pseudogene Approved 9q33.1 09q33.1 2013-10-15 2013-10-15 389787 ENSG00000234782 OTTHUMG00000020565 NG_021634 PGOHUM00000236321 +HGNC:49301 TPT1P10 tumor protein, translationally-controlled 1 pseudogene 10 pseudogene pseudogene Approved 10q21.1 10q21.1 2013-10-15 2013-10-15 101928715 ENSG00000180221 OTTHUMG00000018265 PGOHUM00000257781 +HGNC:49302 TPT1P11 tumor protein, translationally-controlled 1 pseudogene 11 pseudogene pseudogene Approved 2p16.3 02p16.3 2013-10-15 2013-10-15 102724868 ENSG00000239995 OTTHUMG00000151767 NG_046582 PGOHUM00000240037 +HGNC:49303 TPT1P12 tumor protein, translationally-controlled 1 pseudogene 12 pseudogene pseudogene Approved 12p13.31 12p13.31 2013-10-15 2013-10-15 100421480 ENSG00000256817 OTTHUMG00000168329 NG_023974 PGOHUM00000258615 +HGNC:49304 TPT1P13 tumor protein, translationally-controlled 1 pseudogene 13 pseudogene pseudogene Approved Xq25 Xq25 2013-10-15 2013-10-15 643421 ENSG00000213498 OTTHUMG00000022323 NG_023285 PGOHUM00000241525 +HGNC:49305 TPT1P14 tumor protein, translationally-controlled 1 pseudogene 14 pseudogene pseudogene Approved Xp22.2 Xp22.2 2013-10-15 2013-10-15 100128521 ENSG00000235929 OTTHUMG00000021169 NG_022583 PGOHUM00000241195 +HGNC:12023 TPTE transmembrane phosphatase with tensin homology protein-coding gene gene with protein product Approved 21p11.2 21p11.2 "PTEN2|CT44" "PTEN-related tyrosine phosphatase|cancer/testis antigen 44" "C2 tensin-type domain containing|PTEN protein phosphatases" "837|902" 1998-03-10 2015-12-11 7179 ENSG00000274391 OTTHUMG00000074127 uc002yip.2 AF007118 NM_001290224 "CCDS74771|CCDS74772|CCDS74773|CCDS77617" P56180 "14659893|11810268" TPTE 604336 +HGNC:17299 TPTE2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 TPIP "C2 tensin-type domain containing|PTEN protein phosphatases" "837|902" 2004-04-16 2015-09-11 93492 ENSG00000132958 OTTHUMG00000016493 uc001ume.4 AJ421032 NM_199254 "CCDS9285|CCDS45013|CCDS45014" Q6XPS3 "11716755|12717346|15057823" MGI:2446460 RGD:1305825 TPTE2 606791 +HGNC:35196 TPTE2P1 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 1 pseudogene pseudogene Approved 13q12.13 13q12.13 2008-10-21 2015-12-11 646405 ENSG00000253771 OTTHUMG00000016596 NR_026730 Q5T6R2 PGOHUM00000291897 +HGNC:38076 TPTE2P2 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 2 pseudogene pseudogene Approved 13q14.3 13q14.3 2010-04-09 2015-12-11 644623 ENSG00000272281 OTTHUMG00000016961 XR_001749878 PGOHUM00000291965 +HGNC:27345 TPTE2P3 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 3 pseudogene pseudogene Approved 13q14.3 13q14.3 2010-04-09 2015-12-11 220115 ENSG00000198384 OTTHUMG00000016976 BC041889 NR_002793 PGOHUM00000292159 +HGNC:38077 TPTE2P4 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 4 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-04-09 2015-12-11 286573 ENSG00000215506 OTTHUMG00000036765 NG_002820 PGOHUM00000305791 +HGNC:42356 TPTE2P5 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-07-01 2015-12-11 100616668 ENSG00000168852 OTTHUMG00000016779 NR_038258 PGOHUM00000291933 +HGNC:42644 TPTE2P6 transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 6 pseudogene pseudogene Approved 13q12.12 13q12.12 2011-08-10 2015-12-11 374491 ENSG00000205822 OTTHUMG00000016586 NR_002815 PGOHUM00000292099 +HGNC:43648 TPTEP1 transmembrane phosphatase with tensin homology pseudogene 1 pseudogene pseudogene Approved 22q11.1 22q11.1 psiTPTE22 2011-12-16 2013-10-15 387590 ENSG00000100181 OTTHUMG00000141300 uc002zls.2 NR_001591 14659893 PGOHUM00000250333 +HGNC:1249 TPX2 TPX2, microtubule nucleation factor protein-coding gene gene with protein product Approved 20q11.21 20q11.21 "p100|DIL-2" "C20orf2|C20orf1" "chromosome 20 open reading frame 1|TPX2, microtubule-associated, homolog (Xenopus laevis)|TPX2, microtubule-associated" 1999-09-29 2003-10-08 2016-04-29 2016-10-05 22974 ENSG00000088325 OTTHUMG00000032190 uc002wwp.2 AF098158 XM_011528697 CCDS13190 Q9ULW0 "9207457|10393424" MGI:1919369 RGD:1311894 TPX2 605917 +HGNC:12027 TRA T-cell receptor alpha locus protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "TCRA|TRA@" T cell receptor alpha locus T-cell receptor alpha locus at 14q11.2 371 1986-01-01 2013-03-05 2015-11-13 2015-11-13 6955 NG_001332 "3875152|3875483" 330881 +HGNC:34914 TRA-AGC1-1 transfer RNA-Ala (AGC) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA34 transfer RNA alanine 34 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189346 HG983548 +HGNC:34654 TRA-AGC2-1 transfer RNA-Ala (AGC) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA13 transfer RNA alanine 13 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189093 HG983549 +HGNC:34861 TRA-AGC2-2 transfer RNA-Ala (AGC) 2-2 non-coding RNA RNA, transfer Approved 6 06 TRNAA27 transfer RNA alanine 27 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189295 HG983550 +HGNC:34865 TRA-AGC3-1 transfer RNA-Ala (AGC) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA28 transfer RNA alanine 28 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189299 HG983551 +HGNC:34605 TRA-AGC4-1 transfer RNA-Ala (AGC) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA7 transfer RNA alanine 7 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189046 HG983552 +HGNC:34606 TRA-AGC5-1 transfer RNA-Ala (AGC) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA8 transfer RNA alanine 8 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189047 HG983553 +HGNC:34601 TRA-AGC6-1 transfer RNA-Ala (AGC) 6-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNAA6 transfer RNA alanine 6 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189042 HG983554 +HGNC:34653 TRA-AGC7-1 transfer RNA-Ala (AGC) 7-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA12 transfer RNA alanine 12 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189092 HG983555 +HGNC:33254 TRA-AGC8-1 transfer RNA-Ala (AGC) 8-1 non-coding RNA RNA, transfer Approved 2p23.3 02p23.3 TRNAA3 transfer RNA alanine 3 (anticodon AGC) Cytoplasmic transfer RNAs 842 2007-02-01 2014-06-19 2014-06-19 2014-06-19 100009604 HG983556 3613974 +HGNC:34966 TRA-AGC8-2 transfer RNA-Ala (AGC) 8-2 non-coding RNA RNA, transfer Approved 8 08 TRNAA39 transfer RNA alanine 39 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189398 HG983557 +HGNC:34718 TRA-AGC9-1 transfer RNA-Ala (AGC) 9-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA20 transfer RNA alanine 20 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189156 HG983558 +HGNC:34992 TRA-AGC9-2 transfer RNA-Ala (AGC) 9-2 non-coding RNA RNA, transfer Approved 6 06 TRNAA42 transfer RNA alanine 42 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189423 HG983559 +HGNC:34690 TRA-AGC10-1 transfer RNA-Ala (AGC) 10-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA18 transfer RNA alanine 18 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189128 HG983560 +HGNC:33253 TRA-AGC11-1 transfer RNA-Ala (AGC) 11-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNAA2 transfer RNA alanine 2 (anticodon AGC) Cytoplasmic transfer RNAs 842 2007-02-01 2014-06-19 2014-06-19 2014-06-19 100009603 HG983561 3613974 +HGNC:34937 TRA-AGC12-1 transfer RNA-Ala (AGC) 12-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA37 transfer RNA alanine 37 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189369 HG983562 +HGNC:34894 TRA-AGC12-2 transfer RNA-Ala (AGC) 12-2 non-coding RNA RNA, transfer Approved 6 06 TRNAA31 transfer RNA alanine 31 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189327 HG983563 +HGNC:34667 TRA-AGC12-3 transfer RNA-Ala (AGC) 12-3 non-coding RNA RNA, transfer Approved 6 06 TRNAA14 transfer RNA alanine 14 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189106 HG983564 +HGNC:34980 TRA-AGC13-1 transfer RNA-Ala (AGC) 13-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA41 transfer RNA alanine 41 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189411 HG983565 +HGNC:34619 TRA-AGC13-2 transfer RNA-Ala (AGC) 13-2 non-coding RNA RNA, transfer Approved 6 06 TRNAA9 transfer RNA alanine 9 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189060 HG983566 +HGNC:34926 TRA-AGC14-1 transfer RNA-Ala (AGC) 14-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA36 transfer RNA alanine 36 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189358 HG983567 +HGNC:34679 TRA-AGC15-1 transfer RNA-Ala (AGC) 15-1 non-coding RNA RNA, transfer Approved 14 14 TRNAA17 transfer RNA alanine 17 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189117 HG983568 +HGNC:34879 TRA-AGC16-1 transfer RNA-Ala (AGC) 16-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA30 transfer RNA alanine 30 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189312 HG983569 +HGNC:34921 TRA-AGC17-1 transfer RNA-Ala (AGC) 17-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA35 transfer RNA alanine 35 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189353 HG983570 +HGNC:34909 TRA-AGC18-1 transfer RNA-Ala (AGC) 18-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA33 transfer RNA alanine 33 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189341 HG983571 +HGNC:34775 TRA-AGC18-2 transfer RNA-Ala (AGC) 18-2 non-coding RNA RNA, transfer Approved 6 06 TRNAA22 transfer RNA alanine 22 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189212 HG983572 +HGNC:34809 TRA-AGC19-1 transfer RNA-Ala (AGC) 19-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA24 transfer RNA alanine 24 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189246 HG983573 +HGNC:34678 TRA-AGC20-1 transfer RNA-Ala (AGC) 20-1 non-coding RNA RNA, transfer Approved 1 01 TRNAA16 transfer RNA alanine 16 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189116 HG983574 +HGNC:34755 TRA-AGC21-1 transfer RNA-Ala (AGC) 21-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA21 transfer RNA alanine 21 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189192 HG983575 +HGNC:35004 TRA-AGC22-1 transfer RNA-Ala (AGC) 22-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA43 transfer RNA alanine 43 (anticodon AGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189434 HG983576 +HGNC:35040 TRA-AGC23-1 transfer RNA-Ala (AGC) 23-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNAA44P transfer RNA alanine 44 (anticodon AGC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189468 HG983577 NG_008526 +HGNC:34875 TRA-CGC1-1 transfer RNA-Ala (CGC) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA29 transfer RNA alanine 29 (anticodon CGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189308 HG983578 +HGNC:34969 TRA-CGC2-1 transfer RNA-Ala (CGC) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA40 transfer RNA alanine 40 (anticodon CGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189400 HG983579 +HGNC:34580 TRA-CGC3-1 transfer RNA-Ala (CGC) 3-1 non-coding RNA RNA, transfer Approved 2 02 TRNAA4 transfer RNA alanine 4 (anticodon CGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189021 HG983580 +HGNC:34592 TRA-CGC4-1 transfer RNA-Ala (CGC) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA5 transfer RNA alanine 5 (anticodon CGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189033 HG983581 +HGNC:34963 TRA-CGC5-1 transfer RNA-Ala (CGC) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA38 transfer RNA alanine 38 (anticodon CGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189395 HG983582 +HGNC:34711 TRA-TGC1-1 transfer RNA-Ala (TGC) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA19 transfer RNA alanine 19 (anticodon UGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189149 HG983583 +HGNC:34676 TRA-TGC2-1 transfer RNA-Ala (TGC) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA15 transfer RNA alanine 15 (anticodon UGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189114 HG983584 +HGNC:34846 TRA-TGC3-1 transfer RNA-Ala (TGC) 3-1 non-coding RNA RNA, transfer Approved 5 05 "TRNAA26|TRA-TGC3-2" "transfer RNA alanine 26 (anticodon UGC)|transfer RNA-Ala (TGC) 3-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189280 HG983586 +HGNC:34795 TRA-TGC3-2 transfer RNA-Ala (TGC) 3-2 non-coding RNA RNA, transfer Approved 12 12 "TRNAA23|TRA-TGC3-1" "transfer RNA alanine 23 (anticodon UGC)|transfer RNA-Ala (TGC) 3-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189232 HG983585 +HGNC:34907 TRA-TGC4-1 transfer RNA-Ala (TGC) 4-1 non-coding RNA RNA, transfer Approved 12 12 TRNAA32 transfer RNA alanine 32 (anticodon UGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189339 HG983587 +HGNC:34625 TRA-TGC5-1 transfer RNA-Ala (TGC) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA10 transfer RNA alanine 10 (anticodon UGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189066 HG983588 +HGNC:34642 TRA-TGC6-1 transfer RNA-Ala (TGC) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAA11 transfer RNA alanine 11 (anticodon UGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189082 HG983589 +HGNC:12098 TRA-TGC7-1 transfer RNA-Ala (TGC) 7-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 "TRAN|TRNAA1" "tRNA alanine|transfer RNA alanine 1 (anticodon UGC)" Cytoplasmic transfer RNAs 842 1995-05-08 2014-06-19 2014-06-19 2014-06-19 7154 HG983590 8661117 601431 +HGNC:34819 TRA-TGC8-1 transfer RNA-Ala (TGC) 8-1 non-coding RNA RNA, transfer Approved 11 11 TRNAA25 transfer RNA alanine 25 (anticodon UGC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189256 HG983591 +HGNC:35106 TRA-TGC9-1 transfer RNA-Ala (TGC) 9-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNAA46P transfer RNA alanine 46 (anticodon UGC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189529 HG983592 NG_008587 +HGNC:35041 TRA-TGC10-1 transfer RNA-Ala (TGC) 10-1 non-coding RNA RNA, transfer Approved 11q12.2 11q12.2 TRNAA45P transfer RNA alanine 45 (anticodon UGC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189469 HG983593 NG_008527 +HGNC:16645 TRA2A transformer 2 alpha homolog protein-coding gene gene with protein product Approved 7p15.3 07p15.3 "htra-2-alpha|tra2a|AWMS1" transformer 2 alpha homolog (Drosophila) RNA binding motif containing 725 2009-02-27 2016-04-11 2016-04-11 29896 ENSG00000164548 OTTHUMG00000128459 uc003swi.5 U53209 NM_013293 "CCDS5383|CCDS64609|CCDS75569" Q13595 "8799144|9546399" MGI:1933972 RGD:1562563 TRA2A 602718 +HGNC:10781 TRA2B transformer 2 beta homolog (Drosophila) protein-coding gene gene with protein product Approved 3q27.2 03q27.2 "Htra2-beta|PPP1R156" protein phosphatase 1, regulatory subunit 156 SFRS10 splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila) "Protein phosphatase 1 regulatory subunits|RNA binding motif containing" "694|725" 1998-04-27 2009-02-27 2009-02-27 2016-10-05 6434 ENSG00000136527 OTTHUMG00000156641 uc003fpv.4 AF057159 NM_004593 "CCDS33905|CCDS58872" P62995 9790768 MGI:106016 RGD:619886 TRA2B 602719 +HGNC:28805 TRABD TraB domain containing protein-coding gene gene with protein product Approved 22q13.33 22q13.33 PP2447 2006-07-06 2014-11-19 80305 ENSG00000170638 OTTHUMG00000044644 uc003bjs.2 AL449244 NM_025204 "CCDS14086|CCDS82724" Q9H4I3 12477932 MGI:1915226 RGD:1310875 TRABD +HGNC:27013 TRABD2A TraB domain containing 2A protein-coding gene gene with protein product Approved 2p11.2 02p11.2 TIKI1 C2orf89 chromosome 2 open reading frame 89 2009-09-30 2012-07-04 2012-07-04 2015-09-08 129293 ENSG00000186854 OTTHUMG00000152922 uc002sou.6 BC049209 NM_001080824 "CCDS46349|CCDS62946|CCDS77428" Q86V40 "22726442|25354456" 614912 M96.001 +HGNC:44200 TRABD2B TraB domain containing 2B protein-coding gene gene with protein product Approved 1p33 01p33 TIKI2 2012-07-04 2015-02-02 388630 ENSG00000269113 OTTHUMG00000007960 uc021ong.2 NM_001194986 CCDS58000 A6NFA1 25354456 MGI:3650152 RGD:1586386 614913 +HGNC:12029 TRAC T-cell receptor alpha constant other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha constant T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2015-11-13 2015-11-13 28755 ENSG00000277734 OTTHUMG00000028683 uc032auu.2 X02592 NG_001332 P01848 "3875483|8188290" 186880 401908 TRAC +HGNC:12030 TRADD TNFRSF1A associated via death domain protein-coding gene gene with protein product Approved 16q22.1 16q22.1 Hs.89862 TNFRSF1A-associated via death domain 1999-05-07 2016-04-20 2016-10-05 8717 ENSG00000102871 OTTHUMG00000137519 uc002eri.2 L41690 NM_001323552 CCDS10829 Q15628 "7758105|22333735" MGI:109200 RGD:621313 TRADD 603500 +HGNC:12031 TRAF1 TNF receptor associated factor 1 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 EBI6 TNF receptor associated factors 1056 1997-06-12 2015-11-20 2016-10-05 7185 ENSG00000056558 OTTHUMG00000020578 uc010mvl.2 AK090468 NM_005658 "CCDS6825|CCDS55335" Q13077 8069916 MGI:101836 RGD:1596290 TRAF1 601711 +HGNC:12032 TRAF2 TNF receptor associated factor 2 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 TRAP3 "Ring finger proteins|TNF receptor associated factors" "58|1056" 1999-04-28 2015-11-20 2016-10-05 7186 ENSG00000127191 OTTHUMG00000020952 uc004cjv.4 U12597 NM_021138 CCDS7013 Q12933 7639698 MGI:101835 RGD:1310457 TRAF2 601895 +HGNC:12033 TRAF3 TNF receptor associated factor 3 protein-coding gene gene with protein product Approved 14q32.32 14q32.32 "CAP-1|CD40bp|CRAF1|LAP1" "Zinc fingers|TNF receptor associated factors" "26|1056" 1998-05-05 2015-11-20 2016-10-12 7187 ENSG00000131323 OTTHUMG00000171902 uc001ymd.3 U21092 NM_145725 "CCDS9975|CCDS9976|CCDS55946" Q13114 "7530216|7859281" MGI:108041 RGD:1304633 LRG_229|http://www.lrg-sequence.org/LRG/LRG_229 TRAF3 601896 292425 +HGNC:17861 TRAF3IP1 TRAF3 interacting protein 1 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "MIP-T3|DKFZP434F124|MIPT3|IFT54" microtubule interacting protein that associates with TRAF3 TNF receptor-associated factor 3 interacting protein 1 Intraflagellar transport proteins 615 2004-03-12 2015-11-20 2015-11-20 26146 ENSG00000204104 OTTHUMG00000152872 uc002vye.4 AF230877 NM_015650 "CCDS33415|CCDS46557" Q8TDR0 "10791955|12935900" MGI:1921269 RGD:1309252 TRAF3IP1 607380 444522 +HGNC:1343 TRAF3IP2 TRAF3 interacting protein 2 protein-coding gene gene with protein product Approved 6q21 06q21 "DKFZP586G0522|ACT1|CIKS" "C6orf4|C6orf5|C6orf6|C6orf2" "chromosome 6 open reading frame 5|chromosome 6 open reading frame 2" 1999-04-15 2005-04-13 2002-06-20 2014-11-18 10758 ENSG00000056972 OTTHUMG00000015379 uc003pvf.5 AF136405 XM_006715319 "CCDS5093|CCDS55049|CCDS55050|CCDS5092" O43734 "10962033|10962024" MGI:2143599 RGD:1593240 TRAF3IP2 607043 370364 +HGNC:40005 TRAF3IP2-AS1 TRAF3IP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q21 06q21 C6UAS "TRAF3IP2-AS2|C6orf3|NCRNA00248" "TRAF3IP2 antisense RNA 2 (non-protein coding)|chromosome 6 open reading frame 3|non-protein coding RNA 248|TRAF3IP2 antisense RNA 1 (non-protein coding)" 2011-04-28 2012-08-15 2014-11-18 643749 ENSG00000231889 OTTHUMG00000015378 uc063qri.1 NR_034108 +HGNC:30766 TRAF3IP3 TRAF3 interacting protein 3 protein-coding gene gene with protein product Approved 1q32.2 01q32.2 T3JAM TRAF3 interacting Jun N terminal kinase (JNK) activating modulator 2005-06-02 2016-10-05 80342 ENSG00000009790 OTTHUMG00000036480 uc001hho.5 XM_017002399 "CCDS1490|CCDS73023|CCDS81422" Q9Y228 14572659 MGI:2441706 RGD:1304848 TRAF3IP3 608255 +HGNC:12034 TRAF4 TNF receptor associated factor 4 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "CART1|MLN62|RNF83" "Ring finger proteins|TNF receptor associated factors" "58|1056" 1999-05-07 2015-11-20 2016-10-05 9618 ENSG00000076604 OTTHUMG00000132677 uc002hcs.4 X80200 NM_145751 CCDS11243 Q9BUZ4 "7592751|7490069" MGI:1202880 RGD:1306708 TRAF4 602464 +HGNC:12035 TRAF5 TNF receptor associated factor 5 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 RNF84 "Ring finger proteins|TNF receptor associated factors" "58|1056" 1997-02-03 2015-11-20 2016-10-05 7188 ENSG00000082512 OTTHUMG00000036997 uc001hih.4 AB000509 NM_004619 CCDS1497 O00463 9126477 MGI:107548 RGD:1593883 TRAF5 602356 +HGNC:12036 TRAF6 TNF receptor associated factor 6 protein-coding gene gene with protein product Approved 11p12 11p12 RNF85 TNF receptor-associated factor 6, E3 ubiquitin protein ligase "Ring finger proteins|TNF receptor associated factors" "58|1056" 1997-06-12 2015-11-20 2015-11-20 7189 ENSG00000175104 OTTHUMG00000166391 uc001mws.3 NM_145803 CCDS7901 Q9Y4K3 8837778 MGI:108072 RGD:1306853 TRAF6 602355 325281 +HGNC:45032 TRAF6P1 TNF receptor associated factor 6 pseudogene 1 pseudogene pseudogene Approved 10q21.1 10q21.1 2013-01-08 2015-11-20 2015-11-20 644871 ENSG00000226557 OTTHUMG00000018274 NG_022147 PGOHUM00000238497 +HGNC:20456 TRAF7 TNF receptor associated factor 7 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "RNF119|DKFZp586I021|MGC7807" RFWD1 "ring finger and WD repeat domain 1|TNF receptor-associated factor 7, E3 ubiquitin protein ligase" "Ring finger proteins|WD repeat domain containing|TNF receptor associated factors" "58|362|1056" 2003-02-14 2004-06-04 2015-11-20 2015-11-20 84231 ENSG00000131653 OTTHUMG00000128826 uc002cow.4 AL136921 NM_032271 CCDS10461 Q6Q0C0 "11230166|15001576" MGI:3042141 RGD:1559653 TRAF7 606692 +HGNC:24808 TRAFD1 TRAF-type zinc finger domain containing 1 protein-coding gene gene with protein product Approved 12q24.13 12q24.13 FLN29 2005-05-30 2013-01-25 10906 ENSG00000135148 OTTHUMG00000169640 uc001ttp.4 AB007447 NM_006700 CCDS9160 O14545 12477932 MGI:1923551 RGD:620171 TRAFD1 613197 +HGNC:30764 TRAIP TRAF interacting protein protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "TRIP|RNF206" ring finger protein 206 Ring finger proteins 58 2006-01-09 2014-11-19 10293 ENSG00000183763 OTTHUMG00000158269 uc003cxs.2 BC019283 NM_005879 CCDS2806 Q9BWF2 9104814 MGI:1096377 RGD:1309761 TRAIP 605958 448855 +HGNC:12037 TRAJ1 T cell receptor alpha joining 1 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha joining 1 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2008-09-12 2014-11-19 28754 ENSG00000211888 OTTHUMG00000170966 uc058zhi.1 X02884 NG_001332 "8188290|2993909" TRAJ1 +HGNC:12048 TRAJ2 T cell receptor alpha joining 2 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha joining 2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2008-09-12 2014-11-19 28753 ENSG00000211887 OTTHUMG00000170965 uc058zhh.1 X02884 NG_001332 "2993909|8188290" TRAJ2 +HGNC:12059 TRAJ3 T cell receptor alpha joining 3 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28752 ENSG00000211886 OTTHUMG00000170964 uc058zhg.1 X02884 NG_001332 "2993909|8188290" TRAJ3 +HGNC:12070 TRAJ4 T cell receptor alpha joining 4 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28751 ENSG00000211885 OTTHUMG00000170963 uc058zhf.1 M94081 NG_001332 8188290 TRAJ4 +HGNC:12081 TRAJ5 T cell receptor alpha joining 5 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28750 ENSG00000211884 OTTHUMG00000170962 uc058zhe.1 M94081 NG_001332 8188290 TRAJ5 +HGNC:12092 TRAJ6 T cell receptor alpha joining 6 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28749 ENSG00000211883 OTTHUMG00000170961 uc058zhd.1 M16747 NG_001332 "3036367|8188290" TRAJ6 +HGNC:12095 TRAJ7 T cell receptor alpha joining 7 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28748 ENSG00000211882 OTTHUMG00000170960 uc032ave.2 M94081 NG_001332 8188290 TRAJ7 +HGNC:12096 TRAJ8 T cell receptor alpha joining 8 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28747 ENSG00000211881 OTTHUMG00000170959 M94081 NG_001332 8188290 TRAJ8 +HGNC:12097 TRAJ9 T cell receptor alpha joining 9 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28746 ENSG00000211880 OTTHUMG00000170958 uc058zhc.1 M94081 NG_001332 8188290 TRAJ9 +HGNC:12038 TRAJ10 T cell receptor alpha joining 10 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28745 ENSG00000211879 OTTHUMG00000170957 uc058zhb.1 M94081 NG_001332 8188290 TRAJ10 +HGNC:12039 TRAJ11 T cell receptor alpha joining 11 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-18 28744 ENSG00000211878 OTTHUMG00000170956 uc058zha.1 M94081 NG_001332 8188290 TRAJ11 +HGNC:12040 TRAJ12 T cell receptor alpha joining 12 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28743 ENSG00000211877 OTTHUMG00000170955 uc058zgz.1 X02885 NG_001332 "8188290|2993909" TRAJ12 +HGNC:12041 TRAJ13 T cell receptor alpha joining 13 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28742 ENSG00000211876 OTTHUMG00000170954 uc058zgy.1 M94081 NG_001332 8188290 TRAJ13 +HGNC:12042 TRAJ14 T cell receptor alpha joining 14 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28741 ENSG00000211875 OTTHUMG00000170953 uc058zgx.1 M94081 NG_001332 8188290 TRAJ14 +HGNC:12043 TRAJ15 T cell receptor alpha joining 15 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2015-02-02 28740 X05775 NG_001332 "3117531|8188290" TRAJ15 +HGNC:12044 TRAJ16 T cell receptor alpha joining 16 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28739 ENSG00000211873 OTTHUMG00000170951 uc058zgw.1 M94081 NG_001332 8188290 TRAJ16 +HGNC:12045 TRAJ17 T cell receptor alpha joining 17 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28738 ENSG00000211872 OTTHUMG00000170950 uc021rqm.2 X05773 NG_001332 8188290 TRAJ17 +HGNC:12046 TRAJ18 T cell receptor alpha joining 18 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-18 28737 ENSG00000211871 OTTHUMG00000170949 uc058zgv.1 M94081 NG_001332 8188290 TRAJ18 +HGNC:12047 TRAJ19 T cell receptor alpha joining 19 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha joining 19 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2008-09-12 2014-11-19 28736 ENSG00000211870 OTTHUMG00000170948 uc058zgu.1 M94081 NG_001332 8188290 TRAJ19 +HGNC:12049 TRAJ20 T cell receptor alpha joining 20 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-18 28735 ENSG00000211869 OTTHUMG00000170947 uc058zgt.1 M94081 NG_001332 8188290 TRAJ20 +HGNC:12050 TRAJ21 T cell receptor alpha joining 21 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28734 ENSG00000211868 OTTHUMG00000170946 uc058zgs.1 M94081 NG_001332 8188290 TRAJ21 +HGNC:12051 TRAJ22 T cell receptor alpha joining 22 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-18 28733 ENSG00000211867 OTTHUMG00000170945 uc058zgr.1 X02886 NG_001332 "8188290|2993909" TRAJ22 +HGNC:12052 TRAJ23 T cell receptor alpha joining 23 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28732 ENSG00000211866 OTTHUMG00000170944 uc058zgq.1 M94081 NG_001332 8188290 TRAJ23 +HGNC:12053 TRAJ24 T cell receptor alpha joining 24 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28731 ENSG00000211865 OTTHUMG00000170943 uc021rqk.2 X02887 NG_001332 "2993909|8188290" TRAJ24 +HGNC:12054 TRAJ25 T cell receptor alpha joining 25 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha joining 25 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2008-09-12 2014-11-19 28730 ENSG00000211864 OTTHUMG00000170942 uc058zgp.1 X02888 NG_001332 "2993909|8188290" TRAJ25 +HGNC:12055 TRAJ26 T cell receptor alpha joining 26 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28729 ENSG00000211863 OTTHUMG00000170941 uc058zgo.1 M94081 NG_001332 8188290 TRAJ26 +HGNC:12056 TRAJ27 T cell receptor alpha joining 27 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28728 ENSG00000211862 OTTHUMG00000170940 uc058zgn.1 M94081 NG_001332 8188290 TRAJ27 +HGNC:12057 TRAJ28 T cell receptor alpha joining 28 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28727 ENSG00000211861 OTTHUMG00000170939 uc058zgm.1 M94081 NG_001332 8188290 TRAJ28 +HGNC:12058 TRAJ29 T cell receptor alpha joining 29 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28726 ENSG00000211860 OTTHUMG00000170938 uc058zgl.1 X02889 NG_001332 "2993909|8188290" TRAJ29 +HGNC:12060 TRAJ30 T cell receptor alpha joining 30 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28725 ENSG00000211859 OTTHUMG00000170937 uc058zgk.1 M94081 NG_001332 8188290 TRAJ30 +HGNC:12061 TRAJ31 T cell receptor alpha joining 31 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28724 ENSG00000211858 OTTHUMG00000170936 uc058zgj.1 M14905 NG_001332 "3490692|8188290" TRAJ31 +HGNC:12062 TRAJ32 T cell receptor alpha joining 32 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28723 ENSG00000211857 OTTHUMG00000170935 uc058zgi.1 M94081 NG_001332 8188290 TRAJ32 +HGNC:12063 TRAJ33 T cell receptor alpha joining 33 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-18 28722 ENSG00000211856 OTTHUMG00000170934 uc058zgh.1 M94081 NG_001332 8188290 TRAJ33 +HGNC:12064 TRAJ34 T cell receptor alpha joining 34 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28721 ENSG00000211855 OTTHUMG00000170933 uc058zgg.1 M35622 NG_001332 "2971534|8188290" TRAJ34 +HGNC:12065 TRAJ35 T cell receptor alpha joining 35 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha joining 35 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2008-09-12 2014-11-19 28720 ENSG00000211854 OTTHUMG00000170932 uc058zgf.1 M94081 NG_001332 8188290 TRAJ35 +HGNC:12066 TRAJ36 T cell receptor alpha joining 36 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2015-02-02 28719 ENSG00000276699 OTTHUMG00000188544 uc058zge.1 M94081 NG_001332 8188290 TRAJ36 +HGNC:12067 TRAJ37 T cell receptor alpha joining 37 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2015-02-02 28718 ENSG00000278661 OTTHUMG00000188542 uc032auq.2 M94081 NG_001332 8188290 TRAJ37 +HGNC:12068 TRAJ38 T cell receptor alpha joining 38 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28717 ENSG00000211851 OTTHUMG00000170929 uc058zgd.1 M94081 NG_001332 8188290 TRAJ38 +HGNC:12069 TRAJ39 T cell receptor alpha joining 39 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28716 ENSG00000211850 OTTHUMG00000170928 uc058zgc.1 M94081 NG_001332 8188290 TRAJ39 +HGNC:12071 TRAJ40 T cell receptor alpha joining 40 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28715 ENSG00000211849 OTTHUMG00000170927 uc058zgb.1 M35620 NG_001332 "2971534|8188290" TRAJ40 +HGNC:12072 TRAJ41 T cell receptor alpha joining 41 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28714 ENSG00000211848 OTTHUMG00000170926 uc058zga.1 M94081 NG_001332 8188290 TRAJ41 +HGNC:12073 TRAJ42 T cell receptor alpha joining 42 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28713 ENSG00000211847 OTTHUMG00000170925 uc021rpz.2 M94081 NG_001332 8188290 TRAJ42 +HGNC:12074 TRAJ43 T cell receptor alpha joining 43 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2014-11-19 28712 ENSG00000211846 OTTHUMG00000170924 uc058zfz.1 M94081 NG_001332 8188290 TRAJ43 +HGNC:12075 TRAJ44 T cell receptor alpha joining 44 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28711 ENSG00000211845 OTTHUMG00000170923 uc058zfy.1 M35619 NG_001332 "2971534|8188290" TRAJ44 +HGNC:12076 TRAJ45 T cell receptor alpha joining 45 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28710 ENSG00000211844 OTTHUMG00000170922 uc058zfx.1 M94081 NG_001332 8188290 TRAJ45 +HGNC:12077 TRAJ46 T cell receptor alpha joining 46 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28709 ENSG00000211843 OTTHUMG00000170921 uc058zfw.1 M94081 NG_001332 8188290 TRAJ46 +HGNC:12078 TRAJ47 T cell receptor alpha joining 47 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28708 ENSG00000211842 OTTHUMG00000170920 uc058zfv.1 M94081 NG_001332 8188290 TRAJ47 +HGNC:12079 TRAJ48 T cell receptor alpha joining 48 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28707 ENSG00000211841 OTTHUMG00000170919 uc058zfu.1 M94081 NG_001332 8188290 TRAJ48 +HGNC:12080 TRAJ49 T cell receptor alpha joining 49 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28706 ENSG00000211840 OTTHUMG00000170918 uc058zft.1 M94081 NG_001332 8188290 TRAJ49 +HGNC:12082 TRAJ50 T cell receptor alpha joining 50 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28705 ENSG00000211839 OTTHUMG00000170917 uc058zfs.1 M94081 NG_001332 8188290 TRAJ50 +HGNC:12083 TRAJ51 T cell receptor alpha joining 51 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 "T cell receptor alpha joining 51|T cell receptor alpha joining 51 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2011-04-15 2012-02-07 28704 ENSG00000248366 OTTHUMG00000170916 M94081 NG_001332 8188290 TRAJ51 +HGNC:12084 TRAJ52 T cell receptor alpha joining 52 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28703 ENSG00000211838 OTTHUMG00000170915 uc058zfr.1 M94081 NG_001332 8188290 TRAJ52 +HGNC:12085 TRAJ53 T cell receptor alpha joining 53 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28702 ENSG00000211837 OTTHUMG00000170914 uc058zfq.1 M94081 NG_001332 8188290 TRAJ53 +HGNC:12086 TRAJ54 T cell receptor alpha joining 54 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28701 ENSG00000211836 OTTHUMG00000170913 uc058zfp.1 M94081 NG_001332 8188290 TRAJ54 +HGNC:12087 TRAJ55 T cell receptor alpha joining 55 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 "T cell receptor alpha joining 55|T cell receptor alpha joining 55 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2011-04-15 2012-02-07 28700 ENSG00000250688 OTTHUMG00000170912 M94081 NG_001332 8188290 TRAJ55 +HGNC:12088 TRAJ56 T cell receptor alpha joining 56 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28699 ENSG00000211835 OTTHUMG00000170911 uc058zfo.1 M94081 NG_001332 8188290 TRAJ56 +HGNC:12089 TRAJ57 T cell receptor alpha joining 57 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2012-02-07 28698 ENSG00000211834 OTTHUMG00000170910 uc058zfn.1 M94081 NG_001332 8188290 TRAJ57 +HGNC:12090 TRAJ58 T cell receptor alpha joining 58 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha joining 58 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2008-09-12 2012-02-07 28697 ENSG00000211833 OTTHUMG00000170909 uc058zfm.1 M94081 NG_001332 8188290 TRAJ58 +HGNC:12091 TRAJ59 T cell receptor alpha joining 59 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha joining 59 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2008-09-12 2012-02-07 28696 ENSG00000211832 OTTHUMG00000170908 uc058zfl.1 M94081 NG_001332 8188290 TRAJ59 +HGNC:12093 TRAJ60 T cell receptor alpha joining 60 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 "T cell receptor alpha joining 60|T cell receptor alpha joining 60 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2011-04-15 2012-02-07 28695 ENSG00000249446 OTTHUMG00000170907 M94081 NG_001332 8188290 TRAJ60 +HGNC:12094 TRAJ61 T cell receptor alpha joining 61 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha joining 61 T-cell receptor alpha locus at 14q11.2 371 2000-05-08 2008-09-12 2012-02-07 28694 ENSG00000211831 OTTHUMG00000170906 uc058zfk.1 M94081 NG_001332 8188290 TRAJ61 +HGNC:29947 TRAK1 trafficking kinesin protein 1 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "OIP106|KIAA1042|MILT1" "OGT(O Glc NAc transferase) interacting protein 106 KDa|O-linked N-acetylglucosamine transferase interacting protein 106|milton homolog 1 (Drosophila)" trafficking protein, kinesin binding 1 2005-12-13 2016-05-16 2016-05-16 22906 ENSG00000182606 OTTHUMG00000131795 uc003cky.5 NM_014965 "CCDS2695|CCDS43072|CCDS58826|CCDS74922" Q9UPV9 "10470851|12435728|16380713|20230862" MGI:1914345 RGD:1307844 TRAK1 608112 +HGNC:13206 TRAK2 trafficking kinesin protein 2 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 "CALS-C|KIAA0549|GRIF-1|OIP98|MILT2" "gamma-aminobutyric acid(A) receptor-interacting factor|milton homolog 2 (Drosophila)|O-linked N-acetylglucosamine transferase interacting protein 98" ALS2CR3 "amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 3|trafficking protein, kinesin binding 2" 2001-02-13 2005-12-13 2016-05-16 2016-05-16 66008 ENSG00000115993 OTTHUMG00000132822 uc002uyb.5 AB038951 NM_015049 CCDS2347 O60296 "11161814|16380713|20230862" MGI:1918077 RGD:620915 TRAK2 607334 +HGNC:20568 TRAM1 translocation associated membrane protein 1 protein-coding gene gene with protein product Approved 8q13.3 08q13.3 "TRAM|TRAMP" 2003-04-03 2016-10-05 23471 ENSG00000067167 OTTHUMG00000164428 uc003xyo.3 X63679 NM_014294 "CCDS6207|CCDS83300" Q15629 1315422 MGI:1919515 RGD:1359100 TRAM1 605190 +HGNC:28371 TRAM1L1 translocation associated membrane protein 1-like 1 protein-coding gene gene with protein product Approved 4q26 04q26 MGC26568 2004-02-06 2014-11-19 133022 ENSG00000174599 OTTHUMG00000132956 uc003ibv.5 AK074617 NM_152402 CCDS3707 Q8N609 12477932 MGI:2443503 RGD:1306398 TRAM1L1 +HGNC:16855 TRAM2 translocation associated membrane protein 2 protein-coding gene gene with protein product Approved 6p12.2 06p12.2 KIAA0057 2003-04-03 2016-10-05 9697 ENSG00000065308 OTTHUMG00000014850 uc003paq.4 D31762 NM_012288 CCDS34477 Q15035 "7584044|10594243" MGI:1924817 RGD:1589151 TRAM2 608485 +HGNC:48663 TRAM2-AS1 TRAM2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 6p12.2 06p12.2 2013-06-04 2013-06-04 2014-02-12 401264 ENSG00000225791 OTTHUMG00000014849 NR_103446 +HGNC:29011 TRANK1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "LBA1|KIAA0342" "lupus brain antigen 1|KIAA0342" "Ankyrin repeat domain containing|Tetratricopeptide repeat domain containing" "403|769" 2009-09-25 2016-04-25 9881 ENSG00000168016 OTTHUMG00000155848 uc003cgj.4 AK096678 NM_014831 CCDS46789 O15050 9205841 MGI:1341834 RGD:1563130 TRANK1 +HGNC:16264 TRAP1 TNF receptor associated protein 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "HSP75|HSP90L" TNF receptor-associated protein 1 Heat shock 90kDa proteins 586 2004-07-02 2016-03-29 2016-03-29 10131 ENSG00000126602 OTTHUMG00000129427 uc002cvt.4 AF154108 NM_016292 "CCDS10508|CCDS61824" Q12931 "10652318|7876093" MGI:1915265 RGD:1359733 TRAP1 606219 +HGNC:19894 TRAPPC1 trafficking protein particle complex 1 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MUM2|BET5" Trafficking protein particle complex 772 2003-08-29 2015-08-26 58485 ENSG00000170043 OTTHUMG00000108171 uc021tpl.1 AF129332 NM_021210 CCDS11125 Q9Y5R8 10582700 MGI:1098727 RGD:1311365 TRAPPC1 610969 +HGNC:23068 TRAPPC2 trafficking protein particle complex 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "TRS20|SEDT|MIP-2A|ZNF547L|hYP38334" SEDL spondyloepiphyseal dysplasia, late Trafficking protein particle complex 772 2005-01-26 2005-01-26 2016-10-05 6399 ENSG00000196459 OTTHUMG00000021157 uc064yat.1 AF157061 NM_014563 "CCDS48082|CCDS48083" P0DI81 14597397 MGI:1913476 RGD:1306925 TRAPPC2 300202 120241 +HGNC:10710 TRAPPC2B trafficking protein particle complex 2B other unknown Approved 19q13.43 19q13.43 "SEDLP1|MIP-2A" "SEDLP|TRAPPC2P1" "spondyloepiphyseal dysplasia, late, pseudogene|trafficking protein particle complex 2 pseudogene 1" 2000-01-20 2014-10-15 2014-10-15 2014-11-19 10597 ENSG00000256060 OTTHUMG00000183279 uc002qok.2 NR_002166 P0DI82 "11134351|24098805" RGD:6499350 +HGNC:30887 TRAPPC2L trafficking protein particle complex 2 like protein-coding gene gene with protein product Approved 16q24.3 16q24.3 HSPC176 trafficking protein particle complex 2-like Trafficking protein particle complex 772 2006-06-15 2016-07-19 2016-07-19 51693 ENSG00000167515 OTTHUMG00000137861 uc002fmg.4 BC011369 NM_016209 "CCDS10971|CCDS82029|CCDS82027|CCDS82028" Q9UL33 "11042152|21525244" MGI:1916295 RGD:1304906 TRAPPC2L 610970 +HGNC:10711 TRAPPC2P2 trafficking protein particle complex 2 pseudogene 2 pseudogene pseudogene Approved 8q13.3 08q13.3 SEDLP2 spondyloepiphyseal dysplasia, late, pseudogene 2 2000-01-20 2009-03-02 2009-03-02 2014-11-19 27196 ENSG00000253124 OTTHUMG00000164467 NG_005354 11031107 PGOHUM00000257191 +HGNC:10712 TRAPPC2P3 trafficking protein particle complex 2 pseudogene 3 pseudogene pseudogene Approved Yq11.222 Yq11.222 SEDLP3 spondyloepiphyseal dysplasia, late, pseudogene 3 2000-01-20 2009-03-02 2009-03-02 2014-11-19 27195 ENSG00000224964 OTTHUMG00000041665 AC007742 NG_004636.1 11031107 PGOHUM00000262152 +HGNC:10713 TRAPPC2P4 trafficking protein particle complex 2 pseudogene 4 pseudogene pseudogene Approved Yq11.23 Yq11.23 SEDLP4 spondyloepiphyseal dysplasia, late, pseudogene 4 2000-01-20 2009-03-02 2009-03-02 2014-11-19 27194 ENSG00000232914 OTTHUMG00000045261 AC007965 NG_004755.2 11031107 PGOHUM00000234092 +HGNC:10714 TRAPPC2P5 trafficking protein particle complex 2 pseudogene 5 pseudogene pseudogene Approved Yq11.23 Yq11.23 SEDLP5 spondyloepiphyseal dysplasia, late, pseudogene 5 2000-01-20 2009-03-02 2009-03-02 2014-11-18 27193 ENSG00000225256 OTTHUMG00000045291 AC010682 NG_004755.2 11031107 PGOHUM00000234087 +HGNC:10715 TRAPPC2P6 trafficking protein particle complex 2 pseudogene 6 pseudogene pseudogene Approved Yq11.23 Yq11.23 SEDLP6 spondyloepiphyseal dysplasia, late, pseudogene 6 2000-01-20 2009-03-02 2009-03-02 2009-03-02 27192 AC009235 11031107 +HGNC:10716 TRAPPC2P7 trafficking protein particle complex 2 pseudogene 7 pseudogene pseudogene Approved Yq11.222 Yq11.222 SEDLP7 spondyloepiphyseal dysplasia, late, pseudogene 7 2000-01-20 2009-03-02 2009-03-02 2016-10-05 392597 ENSG00000249606 OTTHUMG00000041987 AC007379 NG_004636.1 11031107 PGOHUM00000233777 +HGNC:37731 TRAPPC2P8 trafficking protein particle complex 2 pseudogene 8 pseudogene pseudogene Approved Yq11.222 Yq11.222 TRAPPC2P3B 2010-02-09 2010-02-09 2016-10-05 414751 ENSG00000225895 OTTHUMG00000041951 NG_004636 PGOHUM00000262159 +HGNC:37733 TRAPPC2P9 trafficking protein particle complex 2 pseudogene 9 pseudogene pseudogene Approved Yq11.223 Yq11.223 TRAPPC2P4B 2010-02-09 2010-02-09 2014-11-19 414753 ENSG00000232845 OTTHUMG00000044986 NG_004755 PGOHUM00000233830 +HGNC:37732 TRAPPC2P10 trafficking protein particle complex 2 pseudogene 10 pseudogene pseudogene Approved Yq11.23 Yq11.23 TRAPPC2P5B 2010-02-09 2010-02-09 2016-10-05 414752 ENSG00000228465 OTTHUMG00000044992 NG_004755 PGOHUM00000233835 +HGNC:19942 TRAPPC3 trafficking protein particle complex 3 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 BET3 Trafficking protein particle complex 772 2003-08-29 2016-10-05 27095 ENSG00000054116 OTTHUMG00000007664 uc001bzx.5 AF041432 NM_014408 "CCDS404|CCDS59194|CCDS72757|CCDS72758" O43617 8619474 MGI:1351486 RGD:1309135 TRAPPC3 610955 +HGNC:21090 TRAPPC3L trafficking protein particle complex 3 like protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "bA259P20.2|FLJ11180" BET3L "BET3 like (S. cerevisiae)|trafficking protein particle complex 3-like" 2003-11-26 2013-05-01 2016-02-23 2016-10-05 100128327 ENSG00000173626 OTTHUMG00000015440 AK002042 XM_166322 CCDS47468 Q5T215 21525244 MGI:3642034 RGD:2318506 614137 +HGNC:19943 TRAPPC4 trafficking protein particle complex 4 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "TRS23|SBDN|PTD009" Trafficking protein particle complex 772 2003-08-29 2016-01-05 51399 ENSG00000196655 OTTHUMG00000166351 uc010ryo.4 AF078862 NM_016146 "CCDS8407|CCDS81632|CCDS81633|CCDS81634|CCDS81635" Q9Y296 10810093 MGI:1926211 RGD:1302991 TRAPPC4 610971 +HGNC:23067 TRAPPC5 trafficking protein particle complex 5 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "MGC52424|TRS31" Trafficking protein particle complex 772 2003-09-01 2014-11-19 126003 ENSG00000181029 OTTHUMG00000182589 uc002mhi.2 BC042161 XM_058961 CCDS42490 Q8IUR0 MGI:1913932 RGD:1563971 TRAPPC5 +HGNC:23069 TRAPPC6A trafficking protein particle complex 6A protein-coding gene gene with protein product Approved 19q13.32 19q13.32 "TRS33|MGC2650|HSPC289" Trafficking protein particle complex 772 2003-09-03 2014-11-19 79090 ENSG00000007255 OTTHUMG00000181775 uc002paw.5 AF161407 NM_024108 "CCDS12655|CCDS59395|CCDS59396|CCDS59397" O75865 MGI:1914341 RGD:1591735 TRAPPC6A 610396 +HGNC:23066 TRAPPC6B trafficking protein particle complex 6B protein-coding gene gene with protein product Approved 14q21.1 14q21.1 Trafficking protein particle complex 772 2003-09-01 2016-10-05 122553 ENSG00000182400 OTTHUMG00000140259 uc001wut.2 AK025437 NM_177452 "CCDS9670|CCDS41947" Q86SZ2 MGI:1925482 RGD:1309325 TRAPPC6B 610397 +HGNC:29169 TRAPPC8 trafficking protein particle complex 8 protein-coding gene gene with protein product Approved 18q12.1 18q12.1 "HsT2706|TRS85|GSG1" general sporulation gene 1 homolog (S. cerevisiae) KIAA1012 KIAA1012 Trafficking protein particle complex 772 2004-01-04 2010-06-29 2010-06-29 2014-11-19 22878 ENSG00000153339 OTTHUMG00000132267 uc002kxc.5 AB023229 NM_014939 CCDS11901 Q9Y2L5 "10231032|11230166" MGI:2443008 RGD:9103349 TRAPPC8 614136 +HGNC:30832 TRAPPC9 trafficking protein particle complex 9 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "IKBKBBP|NIBP|KIAA1882|T1|TRS120|MRT13" "TRAPP 120 kDa subunit|tularik gene 1" Trafficking protein particle complex 772 2008-05-07 2016-10-12 83696 ENSG00000167632 OTTHUMG00000164187 uc003yvj.3 BC006206 NM_031466 "CCDS34946|CCDS55278" Q96Q05 11572484 MGI:1923760 RGD:1309461 LRG_1041|http://www.lrg-sequence.org/LRG/LRG_1041 TRAPPC9 611966 218049 +HGNC:11868 TRAPPC10 trafficking protein particle complex 10 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "EHOC-1|TRS130" "trafficking protein particle complex subunit 130|TRAPP 130 kDa subunit" TMEM1 transmembrane protein 1 Trafficking protein particle complex 772 1996-06-21 2008-05-07 2008-05-07 2014-11-19 7109 ENSG00000160218 OTTHUMG00000086894 uc002zea.4 U19252 NM_003274 CCDS13704 P48553 7633421 MGI:1336209 RGD:1311263 TRAPPC10 602103 +HGNC:25751 TRAPPC11 trafficking protein particle complex 11 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "FLJ12716|gry|foigr" "gryzun homolog (Drosophila)|foie gras homolog (zebrafish)" C4orf41 chromosome 4 open reading frame 41 Trafficking protein particle complex 772 2007-12-13 2011-12-12 2011-12-12 2014-11-19 60684 ENSG00000168538 OTTHUMG00000160673 uc003ivx.4 NM_021942 "CCDS34112|CCDS47166" Q7Z392 "19942856|21525244" MGI:2444585 RGD:1309765 614138 376401 +HGNC:24284 TRAPPC12 trafficking protein particle complex 12 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 "CGI-87|TTC-15" TTC15 tetratricopeptide repeat domain 15 "Tetratricopeptide repeat domain containing|Trafficking protein particle complex" "769|772" 2003-12-22 2011-12-12 2011-12-12 2014-11-19 51112 ENSG00000171853 OTTHUMG00000090328 uc002qxn.2 BC017475 NM_016030 CCDS1652 Q8WVT3 "10810093|21525244|20562859" MGI:2445089 RGD:1566054 614139 +HGNC:41046 TRAPPC12-AS1 TRAPPC12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2p25.3 02p25.3 TRAPPC12 antisense RNA 1 (non-protein coding) 2011-12-12 2012-08-15 2014-11-19 100861515 ENSG00000225234 OTTHUMG00000151434 uc061gep.1 BG683264 +HGNC:25828 TRAPPC13 trafficking protein particle complex 13 protein-coding gene gene with protein product Approved 5q12.3 05q12.3 "FLJ13611|FLJ26957|MGC48585" Trs65-related C5orf44 chromosome 5 open reading frame 44 Trafficking protein particle complex 772 2008-06-19 2013-01-24 2013-01-24 2015-08-11 80006 ENSG00000113597 OTTHUMG00000163649 uc003jua.5 NM_024941 "CCDS47221|CCDS47222|CCDS47223|CCDS58950" A5PLN9 23394947 MGI:1914225 RGD:1306583 TRAPPC13 +HGNC:50347 TRAPPC13P1 trafficking protein particle complex 13 pseudogene 1 pseudogene pseudogene Approved Xq13.3 Xq13.3 2014-04-15 2014-04-15 646193 ENSG00000235447 OTTHUMG00000021880 NG_022906 PGOHUM00000241406 +HGNC:30698 TRAT1 T cell receptor associated transmembrane adaptor 1 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 "HSPC062|TRIM" TCRIM T cell receptor interacting molecule 2004-11-03 2005-05-04 2005-05-04 2016-10-05 50852 ENSG00000163519 OTTHUMG00000159198 uc003dxi.2 AJ240084 NM_016388 "CCDS33813|CCDS82814" Q6PIZ9 "10663578|9687533" MGI:1924897 RGD:1563011 TRAT1 604962 +HGNC:12101 TRAV1-1 T cell receptor alpha variable 1-1 other T cell receptor gene Approved 14q11.2 14q11.2 "TRAV11|TCRAV1S1|TCRAV7S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-18 28693 ENSG00000255569 OTTHUMG00000168977 uc058zdj.1 AE000658 NG_001332 8188290 TRAV1-1 +HGNC:12102 TRAV1-2 T cell receptor alpha variable 1-2 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28692 ENSG00000256553 OTTHUMG00000168978 uc058zdk.1 AE000658 NG_001332 8188290 TRAV1-2 +HGNC:12116 TRAV2 T cell receptor alpha variable 2 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-18 28691 ENSG00000211776 OTTHUMG00000168980 uc021roz.2 AE000658 NG_001332 8188290 TRAV2 +HGNC:12128 TRAV3 T cell receptor alpha variable 3 (gene/pseudogene) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha variable 3 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2008-09-12 2014-11-19 28690 ENSG00000211777 OTTHUMG00000168981 uc001wbn.5 AE000658 NG_001332 8188290 TRAV3 +HGNC:12140 TRAV4 T cell receptor alpha variable 4 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV20S1|TCRAV4S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28689 ENSG00000211778 OTTHUMG00000168982 uc001wbp.4 AE000658 NG_001332 8188290 TRAV4 +HGNC:12143 TRAV5 T cell receptor alpha variable 5 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28688 ENSG00000211779 OTTHUMG00000168983 uc058zdm.1 AE000659 NG_001332 8188290 TRAV5 +HGNC:12144 TRAV6 T cell receptor alpha variable 6 other T cell receptor gene Approved 14q11.2 14q11.2 TCRAV5S1 T-cell receptor alpha locus at 14q11.2 371 1995-02-07 2014-11-19 6956 ENSG00000211780 OTTHUMG00000168984 uc001wbt.2 Z49060 NG_001332 "8188290|8530018" TRAV6 +HGNC:12145 TRAV7 T cell receptor alpha variable 7 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28686 ENSG00000211781 OTTHUMG00000168985 uc058zdo.1 AE000659 NG_001332 8188290 TRAV7 +HGNC:12146 TRAV8-1 T cell receptor alpha variable 8-1 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28685 ENSG00000211782 OTTHUMG00000168986 uc058zdp.1 AE000659 NG_001332 8188290 TRAV8-1 +HGNC:12147 TRAV8-2 T cell receptor alpha variable 8-2 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28684 ENSG00000211786 OTTHUMG00000168991 uc001wbz.2 AE000659 NG_001332 8188290 TRAV8-2 +HGNC:12148 TRAV8-3 T cell receptor alpha variable 8-3 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28683 ENSG00000211787 OTTHUMG00000168992 uc021rpf.2 AE000659 NG_001332 "8188290|2971534" RGD:2321267 TRAV8-3 +HGNC:12149 TRAV8-4 T cell receptor alpha variable 8-4 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28682 ENSG00000211790 OTTHUMG00000168995 uc058zdu.1 AE000659 NG_001332 8188290 TRAV8-4 +HGNC:12150 TRAV8-5 T cell receptor alpha variable 8-5 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 "TRAV85|TCRAV8S5" "T cell receptor alpha variable 8-5|T cell receptor alpha variable 8-5 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2011-04-15 2014-11-19 28681 ENSG00000256379 OTTHUMG00000168996 AE000659 NG_001332 8188290 PGOHUM00000248069 TRAV8-5 +HGNC:12151 TRAV8-6 T cell receptor alpha variable 8-6 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28680 ENSG00000211795 OTTHUMG00000170641 uc058zdx.1 X02850 NG_001332 "8206523|2993909" TRAV8-6 +HGNC:12152 TRAV8-7 T cell receptor alpha variable 8-7 (non-functional) other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor alpha variable 8-7 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2008-09-11 2014-11-19 28679 ENSG00000211808 OTTHUMG00000170655 uc010tmq.4 AE000660 NG_001332 8188290 TRAV8-7 +HGNC:12153 TRAV9-1 T cell receptor alpha variable 9-1 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28678 ENSG00000211783 OTTHUMG00000168987 uc001wbv.4 AE000659 NG_001332 8188290 TRAV9-1 +HGNC:12154 TRAV9-2 T cell receptor alpha variable 9-2 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28677 ENSG00000211793 OTTHUMG00000170637 uc032atm.2 AE000659 NG_001332 8188290 RGD:6489577 TRAV9-2 +HGNC:12103 TRAV10 T cell receptor alpha variable 10 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV10S1|TCRAV24S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28676 ENSG00000211784 OTTHUMG00000168988 uc058zdq.1 AE000659 NG_001332 8188290 TRAV10 +HGNC:12104 TRAV11 T cell receptor alpha variable 11 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 "T cell receptor alpha variable 11|T cell receptor alpha variable 11 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2011-04-15 2014-11-19 28675 ENSG00000256474 OTTHUMG00000168989 AE000659 NG_001332 8188290 TRAV11 +HGNC:12105 TRAV12-1 T cell receptor alpha variable 12-1 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28674 ENSG00000211785 OTTHUMG00000168990 uc058zdr.1 AE000659 NG_001332 8188290 TRAV12-1 +HGNC:12106 TRAV12-2 T cell receptor alpha variable 12-2 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28673 ENSG00000211789 OTTHUMG00000168994 uc058zdt.1 AE000659 NG_001332 8188290 TRAV12-2 +HGNC:12107 TRAV12-3 T cell receptor alpha variable 12-3 other T cell receptor gene Approved 14q11.2 14q11.2 "TRAV123|TCRAV2S2|TCRAV12S3" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2012-02-07 28672 ENSG00000211794 OTTHUMG00000170640 uc058zdw.1 X06193 NG_001332 "3501368|8951372" RGD:1564212 TRAV12-3 +HGNC:12108 TRAV13-1 T cell receptor alpha variable 13-1 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28671 ENSG00000211788 OTTHUMG00000168993 uc058zds.1 AE000659 NG_001332 8188290 TRAV13-1 +HGNC:12109 TRAV13-2 T cell receptor alpha variable 13-2 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28670 ENSG00000211791 OTTHUMG00000168997 uc058zdv.1 AE000659 NG_001332 8188290 TRAV13-2 +HGNC:12110 TRAV14DV4 T cell receptor alpha variable 14/delta variable 4 other T cell receptor gene Approved 14q11.2 14q11.2 "TRAV14/DV4|TCRAV6S1-hDV104S1|hADV14S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28669 ENSG00000211792 OTTHUMG00000168998 uc032atk.2 M21626 NG_001332 2456576 TRAV14/DV4 +HGNC:12111 TRAV15 T cell receptor alpha variable 15 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 TCRAV15S1 "T cell receptor alpha variable 15|T cell receptor alpha variable 15 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2011-04-15 2014-11-19 28668 ENSG00000258482 OTTHUMG00000170638 AE000659 NG_001332 8188290 TRAV15 +HGNC:12112 TRAV16 T cell receptor alpha variable 16 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV16S1|TCRAV9S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28667 ENSG00000211796 OTTHUMG00000170642 uc058zdy.1 AE000659 NG_001332 8188290 TRAV16 +HGNC:12113 TRAV17 T cell receptor alpha variable 17 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV17S1|TCRAV3S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28666 ENSG00000211797 OTTHUMG00000170643 uc058zdz.1 AE000660 NG_001332 "8188290|8662074" TRAV17 +HGNC:12114 TRAV18 T cell receptor alpha variable 18 other T cell receptor gene Approved 14q11.2 14q11.2 TCRAV18S1 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28665 ENSG00000211798 OTTHUMG00000170644 uc058zea.1 AE000660 NG_001332 8188290 TRAV18 +HGNC:12115 TRAV19 T cell receptor alpha variable 19 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV12S1|TCRAV19S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28664 ENSG00000211799 OTTHUMG00000170645 uc058zeb.1 AE000660 NG_001332 8188290 TRAV19 +HGNC:12117 TRAV20 T cell receptor alpha variable 20 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-18 28663 ENSG00000211800 OTTHUMG00000170647 uc021rpo.3 AE000660 NG_001332 8188290 TRAV20 +HGNC:12118 TRAV21 T cell receptor alpha variable 21 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-18 28662 ENSG00000211801 OTTHUMG00000170648 uc058zec.1 AE000660 NG_001332 8188290 TRAV21 +HGNC:12119 TRAV22 T cell receptor alpha variable 22 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV13S1|TCRAV22S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28661 ENSG00000211802 OTTHUMG00000170649 uc001wcy.4 AE000660 NG_001332 8188290 TRAV22 +HGNC:12120 TRAV23DV6 T cell receptor alpha variable 23/delta variable 6 other T cell receptor gene Approved 14q11.2 14q11.2 "TRAV23/DV6|TCRAV17S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28660 ENSG00000211803 OTTHUMG00000170650 uc058zed.1 AE000660 NG_001332 8188290 TRAV23/DV6 +HGNC:12121 TRAV24 T cell receptor alpha variable 24 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-18 28659 ENSG00000211805 OTTHUMG00000170652 uc058zeg.1 AE000660 NG_001332 "12594262|8188290" TRAV24 +HGNC:12122 TRAV25 T cell receptor alpha variable 25 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV25S1|TCRAV32S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28658 ENSG00000211806 OTTHUMG00000170653 uc010ajh.2 AE000660 NG_001332 8188290 TRAV25 +HGNC:12123 TRAV26-1 T cell receptor alpha variable 26-1 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28657 ENSG00000211807 OTTHUMG00000170654 uc058zeh.1 AE000660 NG_001332 8188290 TRAV26-1 +HGNC:12124 TRAV26-2 T cell receptor alpha variable 26-2 other T cell receptor gene Approved 14q11.2 14q11.2 "TRAV262|TCRAV4S1|TCRAV26S2" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28656 ENSG00000211812 OTTHUMG00000170663 uc058zem.1 AE000660 NG_001332 8188290 TRAV26-2 +HGNC:12125 TRAV27 T cell receptor alpha variable 27 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28655 ENSG00000211809 OTTHUMG00000170656 uc058zej.1 AE000660 NG_001332 8188290 TRAV27 +HGNC:12126 TRAV28 T cell receptor alpha variable 28 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 "T cell receptor alpha variable 28|T cell receptor alpha variable 28 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2011-04-15 2014-11-19 28654 ENSG00000258835 OTTHUMG00000170657 AE000660 NG_001332 8188290 TRAV28 +HGNC:12127 TRAV29DV5 T cell receptor alpha variable 29/delta variable 5 (gene/pseudogene) other T cell receptor gene Approved 14q11.2 14q11.2 TRAV29/DV5 T cell receptor alpha variable 29/delta variable 5 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2008-09-12 2014-11-19 28653 ENSG00000211810 OTTHUMG00000170658 uc058zek.1 AE000660 NG_001332 8188290 TRAV29/DV5 +HGNC:12129 TRAV30 T cell receptor alpha variable 30 other T cell receptor gene Approved 14q11.2 14q11.2 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28652 ENSG00000259092 OTTHUMG00000170659 uc058zel.1 AE000660 NG_001332 8188290 TRAV30 +HGNC:12130 TRAV31 T cell receptor alpha variable 31 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 TCRAV31S1 "T cell receptor alpha variable 31|T cell receptor alpha variable 31 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2011-04-15 2014-11-19 28651 ENSG00000249048 OTTHUMG00000170660 AE000660 NG_001332 8188290 TRAV31 +HGNC:12131 TRAV32 T cell receptor alpha variable 32 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 "T cell receptor alpha variable 32|T cell receptor alpha variable 32 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2011-04-15 2014-11-19 28650 ENSG00000258905 OTTHUMG00000170661 AE000660 NG_001332 8188290 PGOHUM00000248097 TRAV32 +HGNC:12132 TRAV33 T cell receptor alpha variable 33 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 C14orf12 "T cell receptor alpha variable 33|T cell receptor alpha variable 33 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2011-04-15 2012-02-07 28649 ENSG00000258812 OTTHUMG00000170662 AE000660 NG_001332 8188290 TRAV33 +HGNC:12133 TRAV34 T cell receptor alpha variable 34 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV26S1|TCRAV34S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28648 ENSG00000211813 OTTHUMG00000170664 uc058zen.1 AE000660 NG_001332 8188290 TRAV34 +HGNC:12134 TRAV35 T cell receptor alpha variable 35 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV25S1|TCRAV35S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28647 ENSG00000211814 OTTHUMG00000170665 AE000660 NG_001332 8188290 TRAV35 +HGNC:12135 TRAV36DV7 T cell receptor alpha variable 36/delta variable 7 other T cell receptor gene Approved 14q11.2 14q11.2 TRAV36/DV7 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28646 ENSG00000211815 OTTHUMG00000170666 uc058zeo.1 AE000660 NG_001332 8188290 TRAV36/DV7 +HGNC:12136 TRAV37 T cell receptor alpha variable 37 (pseudogene) pseudogene T cell receptor pseudogene Approved 14q11.2 14q11.2 "T cell receptor alpha variable 37|T cell receptor alpha variable 37 pseudogene" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2011-04-15 2014-11-19 28645 ENSG00000259068 OTTHUMG00000170836 AE000661 NG_001332 8188290 PGOHUM00000248102 TRAV37 +HGNC:12137 TRAV38-1 T cell receptor alpha variable 38-1 other T cell receptor gene Approved 14q11.2 14q11.2 "TRAV381|TCRAV14S2|TCRAV38S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28644 ENSG00000211816 OTTHUMG00000170837 uc021rpx.2 AE000661 NG_001332 8188290 TRAV38-1 +HGNC:12138 TRAV38-2DV8 T cell receptor alpha variable 38-2/delta variable 8 other T cell receptor gene Approved 14q11.2 14q11.2 "TRAV38-2/DV8|TRAV382DV8|TCRAV14S1|hADV38S2" T cell receptor alpha/delta variable 38-2/DV8 T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28643 ENSG00000211817 OTTHUMG00000170838 uc032aua.2 AE000661 NG_001332 8188290 TRAV38-2/DV8 +HGNC:12139 TRAV39 T cell receptor alpha variable 39 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV27S1|TCRAV39S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-19 28642 ENSG00000211818 OTTHUMG00000170839 uc058zer.1 AE000661 NG_001332 8188290 TRAV39 +HGNC:12141 TRAV40 T cell receptor alpha variable 40 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV31S1|TCRAV40S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-18 28641 ENSG00000211819 OTTHUMG00000170840 uc058zes.1 X73521 NG_001332 8412327 TRAV40 +HGNC:12142 TRAV41 T cell receptor alpha variable 41 other T cell receptor gene Approved 14q11.2 14q11.2 "TCRAV19S1|TCRAV41S1" T-cell receptor alpha locus at 14q11.2 371 2000-05-15 2014-11-18 28640 ENSG00000211820 OTTHUMG00000170841 uc058zet.1 AE000661 NG_001332 8188290 TRAV41 +HGNC:12155 TRB T cell receptor beta locus protein-coding gene gene with protein product Approved 7q34 07q34 T-cell antigen receptor, beta polypeptide, T-cell receptor, beta cluster "TCRB|TRB@" T cell receptor beta locus at 7q34 372 1986-01-01 2013-03-05 2013-03-05 6957 U66059 NG_001333 3983641 330810 +HGNC:12156 TRBC1 T cell receptor beta constant 1 other T cell receptor gene Approved 7q34 07q34 "TCRBC1|BV05S1J2.2" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28639 ENSG00000211751 OTTHUMG00000190609 uc064ita.1 M12887 NG_001333 P01850 3860845 186930 TRBC1 +HGNC:12157 TRBC2 T cell receptor beta constant 2 other T cell receptor gene Approved 7q34 07q34 TCRBC2 T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-08 28638 ENSG00000211772 OTTHUMG00000158912 uc064itq.1 M12888 NG_001333 A0A5B9 "3860845|8951372" 615445 TRBC2 +HGNC:12158 TRBD1 T cell receptor beta diversity 1 other T cell receptor gene Approved 7q34 07q34 TCRBD1 T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28637 ENSG00000282431 OTTHUMG00000190602 uc284qei.1 X00936 NG_001333 8650574 615447 TRBD1 +HGNC:12159 TRBD2 T cell receptor beta diversity 2 other T cell receptor gene Approved 7q34 07q34 TCRBD2 T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28636 X02987 NG_001333 8650574 615448 TRBD2 +HGNC:12162 TRBJ1-1 T cell receptor beta joining 1-1 other T cell receptor gene Approved 7q34 07q34 "TRBJ11|TCRBJ1S1" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28635 ENSG00000282320 OTTHUMG00000190603 uc284qej.1 X00936 NG_001333 8650574 TRBJ1-1 +HGNC:12163 TRBJ1-2 T cell receptor beta joining 1-2 other T cell receptor gene Approved 7q34 07q34 "TRBJ12|TCRBJ1S2" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28634 ENSG00000282420 OTTHUMG00000190604 uc284qek.1 X00936 NG_001333 8650574 TRBJ1-2 +HGNC:12164 TRBJ1-3 T cell receptor beta joining 1-3 other T cell receptor gene Approved 7q34 07q34 "TRBJ13|TCRBJ1S3" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28633 ENSG00000282133 OTTHUMG00000190605 uc284qbl.1 M14158 NG_001333 8650574 TRBJ1-3 +HGNC:12165 TRBJ1-4 T cell receptor beta joining 1-4 other T cell receptor gene Approved 7q34 07q34 "TRBJ14|TCRBJ1S4" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28632 ENSG00000281958 OTTHUMG00000190606 uc284qbm.1 M14158 NG_001333 8650574 TRBJ1-4 +HGNC:12166 TRBJ1-5 T cell receptor beta joining 1-5 other T cell receptor gene Approved 7q34 07q34 "TRBJ15|TCRBJ1S5" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28631 ENSG00000282173 OTTHUMG00000190607 uc284qbn.1 M14158 NG_001333 8650574 TRBJ1-5 +HGNC:12167 TRBJ1-6 T cell receptor beta joining 1-6 other T cell receptor gene Approved 7q34 07q34 "TRBJ16|TCRBJ1S6" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28630 ENSG00000282780 OTTHUMG00000190608 uc284qeo.1 M14158 NG_001333 8650574 TRBJ1-6 +HGNC:12168 TRBJ2-1 T cell receptor beta joining 2-1 other T cell receptor gene Approved 7q34 07q34 "TRBJ21|TCRBJ2S1" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28629 ENSG00000211764 OTTHUMG00000158918 uc064iti.1 X02987 NG_001333 8650574 TRBJ2-1 +HGNC:12169 TRBJ2-2 T cell receptor beta joining 2-2 other T cell receptor gene Approved 7q34 07q34 "TRBJ22|TCRBJ2S2" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28628 ENSG00000211765 OTTHUMG00000158870 uc064itj.1 X02987 NG_001333 8650574 TRBJ2-2 +HGNC:12170 TRBJ2-2P T cell receptor beta joining 2-2P (non-functional) other T cell receptor gene Approved 7q34 07q34 TRBJ22P T cell receptor beta joining 2-2P T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-12 2012-02-07 28627 ENSG00000211766 OTTHUMG00000158876 uc064itk.1 X02987 NG_001333 8650574 TRBJ2-2P +HGNC:12171 TRBJ2-3 T cell receptor beta joining 2-3 other T cell receptor gene Approved 7q34 07q34 "TRBJ23|TCRBJ2S3" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28626 ENSG00000211767 OTTHUMG00000158896 uc064itl.1 X02987 NG_001333 8650574 TRBJ2-3 +HGNC:12172 TRBJ2-4 T cell receptor beta joining 2-4 other T cell receptor gene Approved 7q34 07q34 "TRBJ24|TCRBJ2S4" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28625 ENSG00000211768 OTTHUMG00000158888 uc064itm.1 X02987 NG_001333 8650574 TRBJ2-4 +HGNC:12173 TRBJ2-5 T cell receptor beta joining 2-5 other T cell receptor gene Approved 7q34 07q34 "TRBJ25|TCRBJ2S5" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28624 ENSG00000211769 OTTHUMG00000158874 uc064itn.1 X02987 NG_001333 8650574 TRBJ2-5 +HGNC:12174 TRBJ2-6 T cell receptor beta joining 2-6 other T cell receptor gene Approved 7q34 07q34 "TRBJ26|TCRBJ2S6" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28623 ENSG00000211770 OTTHUMG00000158913 uc064ito.1 X02987 NG_001333 8650574 TRBJ2-6 +HGNC:12175 TRBJ2-7 T cell receptor beta joining 2-7 other T cell receptor gene Approved 7q34 07q34 "TRBJ27|TCRBJ2S7" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28622 ENSG00000211771 OTTHUMG00000158906 uc064itp.1 M14159 NG_001333 8650574 TRBJ2-7 +HGNC:12176 TRBV1 T cell receptor beta variable 1 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TCRBV27S1P|TCRBV1S1P" "T cell receptor beta variable 1|T cell receptor beta variable 1 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-02-07 28621 ENSG00000242736 OTTHUMG00000158515 L36092 NG_001333 8650574 PGOHUM00000233603 TRBV1 +HGNC:12195 TRBV2 T cell receptor beta variable 2 other T cell receptor gene Approved 7q34 07q34 "TCRBV22S1A2N1T|TCRBV2S1" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28620 ENSG00000226660 OTTHUMG00000158532 uc033ajr.2 L36092 NG_001333 8650574 TRBV2 +HGNC:12212 TRBV3-1 T cell receptor beta variable 3-1 other T cell receptor gene Approved 7q34 07q34 "TRBV31|TCRBV3S1|TCRBV9S1A1T" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28619 ENSG00000237702 OTTHUMG00000158526 uc022amz.3 U07977 NG_001333 8650574 TRBV3-1 +HGNC:12213 TRBV3-2 T cell receptor beta variable 3-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 alternate reference locus 07q34 alternate reference locus "TRBV32|TCRBV3S2|TCRBV9S2A2PT" "T cell receptor beta variable 3-2|T cell receptor beta variable 3-2 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2015-02-27 28618 "L36092|KI270803" NG_001333 8650574 TRBV3-2 +HGNC:12215 TRBV4-1 T cell receptor beta variable 4-1 other T cell receptor gene Approved 7q34 07q34 "TRBV41|TCRBV4S1|TCRBV7S1A1N2T|BV07S1J2.7" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28617 ENSG00000211710 OTTHUMG00000158522 uc003vxg.5 U07977 NG_001333 8650574 TRBV4-1 +HGNC:12216 TRBV4-2 T cell receptor beta variable 4-2 other T cell receptor gene Approved 7q34 07q34 "TRBV42|TCRBV4S2|TCRBV7S3A2T" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28616 ENSG00000211745 OTTHUMG00000158525 uc003vxp.6 U07975 NG_001333 8650574 TRBV4-2 +HGNC:12217 TRBV4-3 T cell receptor beta variable 4-3 other T cell receptor gene Approved 7q34 alternate reference locus 07q34 alternate reference locus "TRBV43|TCRBV4S3|TCRBV7S2A1N4T" T cell receptor beta locus at 7q34 372 2000-05-15 2015-02-27 28615 uc284qcg.1 "U07978|KI270803" NG_001333 "8650574|7931073" TRBV4-3 +HGNC:12218 TRBV5-1 T cell receptor beta variable 5-1 other T cell receptor gene Approved 7q34 07q34 "TRBV51|TCRBV5S1|TCRBV5S1A1T" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28614 ENSG00000211734 OTTHUMG00000158520 uc033ajs.2 L36092 NG_001333 8650574 TRBV5-1 +HGNC:12219 TRBV5-2 T cell receptor beta variable 5-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TRBV52|TCRBV31S1|TCRBV5S2P" "T cell receptor beta variable 5-2|T cell receptor beta variable 5-2 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-02-07 28613 ENSG00000242771 OTTHUMG00000158537 L36092 NG_001333 8650574 PGOHUM00000233044 TRBV5-2 +HGNC:12220 TRBV5-3 T cell receptor beta variable 5-3 (non-functional) other T cell receptor gene Approved 7q34 07q34 "TRBV53|TCRBV5S3|TCRBV5S5P" T cell receptor beta variable 5-3 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-11 2012-02-07 28612 ENSG00000211715 OTTHUMG00000158510 uc033akp.2 X61439 NG_001333 8650574 TRBV5-3 +HGNC:12221 TRBV5-4 T cell receptor beta variable 5-4 other T cell receptor gene Approved 7q34 07q34 "TRBV54|TCRBV5S4|TCRBV5S6A3N2T" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28611 ENSG00000230099 OTTHUMG00000158524 uc033alh.2 L36092 NG_001333 8650574 TRBV5-4 +HGNC:12222 TRBV5-5 T cell receptor beta variable 5-5 other T cell receptor gene Approved 7q34 07q34 "TRBV55|TCRBV5S3A2T|TCRBV5S5" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28610 ENSG00000211725 OTTHUMG00000158512 uc033aln.2 L36092 NG_001333 8650574 TRBV5-5 +HGNC:12223 TRBV5-6 T cell receptor beta variable 5-6 other T cell receptor gene Approved 7q34 07q34 "TRBV56|TCRBV5S2|TCRBV5S6" T-cell receptor beta chain V region CTL-L17 -like T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28609 ENSG00000211728 OTTHUMG00000158873 uc033als.2 L36092 NG_001333 8650574 TRBV5-6 +HGNC:12224 TRBV5-7 T cell receptor beta variable 5-7 (non-functional) other T cell receptor gene Approved 7q34 07q34 "TRBV57|TCRBV5S7|TCRBV5S7P" T cell receptor beta variable 5-7 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-11 2012-02-07 28608 ENSG00000211731 OTTHUMG00000158897 uc064ism.1 L36092 NG_001333 8650574 TRBV5-7 +HGNC:12225 TRBV5-8 T cell receptor beta variable 5-8 other T cell receptor gene Approved 7q34 alternate reference locus 07q34 alternate reference locus "TRBV58|TCRBV5S4A2T|TCRBV5S8" T cell receptor beta locus at 7q34 372 2000-05-15 2015-02-20 28607 uc284qde.1 L36092 NG_001333 8650574 TRBV5-8 +HGNC:12226 TRBV6-1 T cell receptor beta variable 6-1 other T cell receptor gene Approved 7q34 07q34 "TRBV61|TCRBV13S3|TCRBV6S1" T-cell receptor beta chain V region C5 -like T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28606 ENSG00000211706 OTTHUMG00000158531 uc033ajw.2 X61446 NG_001333 8650574 TRBV6-1 +HGNC:12227 TRBV6-2 T cell receptor beta variable 6-2 (gene/pseudogene) other T cell receptor gene Approved 7q34 07q34 "TRBV62|TCRBV13S2A1T|TCRBV6S2" T cell receptor beta variable 6-2 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-12 2014-11-19 28605 ENSG00000283063 OTTHUMG00000191598 uc284qcf.1 X61445 NG_001333 8650574 TRBV6-2 +HGNC:12228 TRBV6-3 T cell receptor beta variable 6-3 other T cell receptor gene Approved 7q34 alternate reference locus 07q34 alternate reference locus "TRBV63|TCRBV13S9/13S2A1T|TCRBV6S3" T cell receptor beta locus at 7q34 372 2000-05-15 2015-02-27 28604 uc284qch.1 "U07978|KI270803" NG_001333 8650574 TRBV6-3 +HGNC:12229 TRBV6-4 T cell receptor beta variable 6-4 other T cell receptor gene Approved 7q34 07q34 "TRBV64|TCRBV13S5|TCRBV6S4" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-18 28603 ENSG00000211713 OTTHUMG00000158533 uc033akl.2 X61653 NG_001333 8650574 TRBV6-4 +HGNC:12230 TRBV6-5 T cell receptor beta variable 6-5 other T cell receptor gene Approved 7q34 07q34 "TRBV65|TCRBV13S1|TCRBV6S5" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28602 ENSG00000211721 OTTHUMG00000158519 uc064isk.1 L36092 NG_001333 8650574 TRBV6-5 +HGNC:12231 TRBV6-6 T cell receptor beta variable 6-6 other T cell receptor gene Approved 7q34 07q34 "TRBV66|TCRBV13S6A2T|TCRBV6S6" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28601 ENSG00000211724 OTTHUMG00000158509 uc033alj.2 L36092 NG_001333 8650574 TRBV6-6 +HGNC:12232 TRBV6-7 T cell receptor beta variable 6-7 (non-functional) other T cell receptor gene Approved 7q34 07q34 "TRBV67|TCRBV13S8P|TCRBV6S7" T cell receptor beta variable 6-7 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-12 2012-02-07 28600 ENSG00000253188 OTTHUMG00000158511 uc033alo.2 L36092 NG_001333 8650574 TRBV6-7 +HGNC:12233 TRBV6-8 T cell receptor beta variable 6-8 other T cell receptor gene Approved 7q34 07q34 "TRBV68|TCRBV13S7P|TCRBV6S8" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28599 ENSG00000253534 OTTHUMG00000158916 uc033alu.2 L36092 NG_001333 8650574 TRBV6-8 +HGNC:12234 TRBV6-9 T cell receptor beta variable 6-9 other T cell receptor gene Approved 7q34 alternate reference locus 07q34 alternate reference locus "TRBV69|TCRBV13S4|TCRBV6S9" T cell receptor beta locus at 7q34 372 2000-05-15 2015-02-04 28598 uc284qdc.1 "X61447|KI270803" NG_001333 8650574 TRBV6-9 +HGNC:12235 TRBV7-1 T cell receptor beta variable 7-1 (non-functional) other T cell receptor gene Approved 7q34 07q34 "TRBV71|TCRBV6S7P|TCRBV7S1" T cell receptor beta variable 7-1 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-12 2012-02-07 28597 ENSG00000211707 OTTHUMG00000158529 uc064ish.1 X61444 NG_001333 8650574 TRBV7-1 +HGNC:12236 TRBV7-2 T cell receptor beta variable 7-2 other T cell receptor gene Approved 7q34 07q34 "TRBV72|TCRBV6S5A1N1|TCRBV7S2" T-cell receptor beta chain V region T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28596 ENSG00000282939 OTTHUMG00000191599 uc284qci.1 X61442 NG_001333 8650574 TRBV7-2 +HGNC:12237 TRBV7-3 T cell receptor beta variable 7-3 other T cell receptor gene Approved 7q34 07q34 "TRBV73|TCRBV6S1A1N1|TCRBV7S3" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28595 ENSG00000211714 OTTHUMG00000158528 uc033ako.2 X61440 NG_001333 8650574 TRBV7-3 +HGNC:12238 TRBV7-4 T cell receptor beta variable 7-4 (gene/pseudogene) other T cell receptor gene Approved 7q34 07q34 "TRBV74|TCRBV6S8A2T|TCRBV7S4" T cell receptor beta variable 7-4 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-12 2014-11-19 28594 ENSG00000253409 OTTHUMG00000158508 uc033alg.2 L36092 NG_001333 8650574 TRBV7-4 +HGNC:12239 TRBV7-5 T cell receptor beta variable 7-5 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TRBV75|TCRBV6S9P|TCRBV7S5" "T cell receptor beta variable 7-5|T cell receptor beta variable 7-5 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-02-07 28593 ENSG00000227550 OTTHUMG00000158506 L36092 NG_001333 8650574 PGOHUM00000233031 TRBV7-5 +HGNC:12240 TRBV7-6 T cell receptor beta variable 7-6 other T cell receptor gene Approved 7q34 07q34 "TRBV76|TCRBV6S3A1N1T|TCRBV7S6" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28592 ENSG00000211727 OTTHUMG00000158882 uc033alp.2 L36092 NG_001333 8650574 TRBV7-6 +HGNC:12241 TRBV7-7 T cell receptor beta variable 7-7 other T cell receptor gene Approved 7q34 07q34 "TRBV77|TCRBV6S6A2T|TCRBV7S7" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28591 ENSG00000253291 OTTHUMG00000158872 uc064isl.1 L36092 NG_001333 8650574 TRBV7-7 +HGNC:12242 TRBV7-8 T cell receptor beta variable 7-8 other T cell receptor gene Approved 7q34 alternate reference locus 07q34 alternate reference locus "TRBV78|TCRBV6S2A1N1T|TCRBV7S8" T cell receptor beta locus at 7q34 372 2000-05-15 2015-02-05 28590 uc284qdd.1 "M11953|KI270803" NG_001333 8650574 TRBV7-8 +HGNC:12243 TRBV7-9 T cell receptor beta variable 7-9 other T cell receptor gene Approved 7q34 07q34 "TRBV79|TCRBV6S4A1|TCRBV7S9" T cell receptor beta locus at 7q34 372 2000-05-15 2015-01-20 28589 ENSG00000278030 OTTHUMG00000188552 uc033aly.2 L36092 NG_001333 8650574 TRBV7-9 +HGNC:12244 TRBV8-1 T cell receptor beta variable 8-1 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TRBV81|TCRBV30S1P|TCRBV8S1P" "T cell receptor beta variable 8-1|T cell receptor beta variable 8-1 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-10-16 28588 ENSG00000243889 OTTHUMG00000158518 L36092 NG_001333 8650574 PGOHUM00000262478 TRBV8-1 +HGNC:12245 TRBV8-2 T cell receptor beta variable 8-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TRBV82|TCRBV32S1P" "T cell receptor beta variable 8-2|T cell receptor beta variable 8-2 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-02-07 28587 ENSG00000239944 OTTHUMG00000158530 L36092 NG_001333 8650574 TRBV8-2 +HGNC:12246 TRBV9 T cell receptor beta variable 9 other T cell receptor gene Approved 7q34 07q34 "TCRBV1S1A1N1|TCRBV9S1" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28586 ENSG00000211716 OTTHUMG00000158527 uc033akq.2 L36092 NG_001333 8650574 TRBV9 +HGNC:12177 TRBV10-1 T cell receptor beta variable 10-1(gene/pseudogene) other T cell receptor gene Approved 7q34 07q34 "TRBV101|TCRBV10S1|TCRBV12S2A1T|TCRBV12S2" T cell receptor beta variable 10-1 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-12 2014-11-19 28585 ENSG00000211717 OTTHUMG00000158514 uc064isi.1 U17050 NG_001333 8650574 TRBV10-1 +HGNC:12178 TRBV10-2 T cell receptor beta variable 10-2 other T cell receptor gene Approved 7q34 07q34 "TRBV102|TCRBV10S2|TCRBV12S3" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28584 ENSG00000229769 OTTHUMG00000158535 uc064isj.1 U17049 NG_001333 8650574 TRBV10-2 +HGNC:12179 TRBV10-3 T cell receptor beta variable 10-3 other T cell receptor gene Approved 7q34 07q34 "TRBV103|TCRBV10S3|TCRBV12S1A1N2" T cell receptor beta locus at 7q34 372 2000-05-15 2015-01-20 28583 ENSG00000275791 OTTHUMG00000188554 uc064iso.1 U03115 NG_001333 8650574 TRBV10-3 +HGNC:12180 TRBV11-1 T cell receptor beta variable 11-1 other T cell receptor gene Approved 7q34 07q34 "TRBV111|TCRBV11S1|TCRBV21S1" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28582 ENSG00000211720 OTTHUMG00000158505 uc033akx.2 M33233 NG_001333 8650574 TRBV11-1 +HGNC:12181 TRBV11-2 T cell receptor beta variable 11-2 other T cell receptor gene Approved 7q34 07q34 "TRBV112|TCRBV11S2|TCRBV21S3A2N2T" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28581 ENSG00000241657 OTTHUMG00000158536 uc033alb.2 L36092 NG_001333 8650574 PGOHUM00000233035 TRBV11-2 +HGNC:12182 TRBV11-3 T cell receptor beta variable 11-3 other T cell receptor gene Approved 7q34 07q34 "TRBV113|TCRBV11S3|TCRBV21S2A2" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-18 28580 ENSG00000276597 OTTHUMG00000188555 uc033amc.2 M33234 NG_001333 8650574 TRBV11-3 +HGNC:12183 TRBV12-1 T cell receptor beta variable 12-1 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TRBV121|TCRBV12S1|TCRBV8S4P" "T cell receptor beta variable 12-1|T cell receptor beta variable 12-1 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-10-16 28579 ENSG00000244661 OTTHUMG00000158507 X07224 NG_001333 8650574 PGOHUM00000233037 TRBV12-1 +HGNC:12184 TRBV12-2 T cell receptor beta variable 12-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TRBV122|TCRBV12S2|TCRBV8S5P" "T cell receptor beta variable 12-2|T cell receptor beta variable 12-2 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-10-16 28578 ENSG00000211739 OTTHUMG00000158523 X06936 NG_001333 8650574 PGOHUM00000262476 TRBV12-2 +HGNC:12185 TRBV12-3 T cell receptor beta variable 12-3 other T cell receptor gene Approved 7q34 07q34 "TRBV123|TCRBV12S3|TCRBV8S1" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28577 ENSG00000274752 OTTHUMG00000188556 uc064isp.1 X07192 NG_001333 P01733 8650574 RGD:6493911 TRBV12-3 +HGNC:12186 TRBV12-4 T cell receptor beta variable 12-4 other T cell receptor gene Approved 7q34 07q34 "TRBV124|TCRBV12S4|TCRBV8S2A1T" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-18 28576 ENSG00000276953 OTTHUMG00000188557 uc033amf.2 K02546 NG_001333 8650574 TRBV12-4 +HGNC:12187 TRBV12-5 T cell receptor beta variable 12-5 other T cell receptor gene Approved 7q34 07q34 "TRBV125|TCRBV12S5|TCRBV8S3" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28575 ENSG00000275158 OTTHUMG00000188558 uc064isq.1 X07223 NG_001333 8650574 TRBV12-5 +HGNC:12188 TRBV13 T cell receptor beta variable 13 other T cell receptor gene Approved 7q34 07q34 "TCRBV13S1|TCRBV23S1A2T" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28574 ENSG00000276405 OTTHUMG00000188553 uc064isn.1 U03115 NG_001333 8650574 TRBV13 +HGNC:12189 TRBV14 T cell receptor beta variable 14 other T cell receptor gene Approved 7q34 07q34 "TCRBV14S1|TCRBV16S1A1N1" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-18 28573 ENSG00000275743 OTTHUMG00000188559 uc033amk.2 X06154 NG_001333 8650574 TRBV14 +HGNC:12190 TRBV15 T cell receptor beta variable 15 other T cell receptor gene Approved 7q34 07q34 "TCRBV15S1|TCRBV24S1A3T" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28572 ENSG00000276819 OTTHUMG00000188560 uc033aml.2 U03115 NG_001333 8650574 TRBV15 +HGNC:12191 TRBV16 T cell receptor beta variable 16 (gene/pseudogene) other T cell receptor gene Approved 7q34 07q34 "TCRBV16S1|TCRBV25S1A2PT" T cell receptor beta variable 16 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-12 2012-02-07 28571 ENSG00000275243 OTTHUMG00000188561 uc064isr.1 L26231 NG_001333 8650574 TRBV16 +HGNC:12192 TRBV17 T cell receptor beta variable 17 (non-functional) other T cell receptor gene Approved 7q34 07q34 "TCRBV17S1|TCRBV26S1P" T cell receptor beta variable 17 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-11 2012-02-07 28570 ENSG00000277880 OTTHUMG00000188562 uc064iss.1 U03115 NG_001333 8650574 TRBV17 +HGNC:12193 TRBV18 T cell receptor beta variable 18 other T cell receptor gene Approved 7q34 07q34 TCRBV18S1 T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28569 ENSG00000276557 OTTHUMG00000188563 uc033amm.2 L36092 NG_001333 8650574 TRBV18 +HGNC:12194 TRBV19 T cell receptor beta variable 19 other T cell receptor gene Approved 7q34 07q34 "TCRBV17S1A1T|TCRBV19S1" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28568 ENSG00000211746 OTTHUMG00000158877 uc003vzo.4 U48260 NG_001333 8650574 TRBV19 +HGNC:12196 TRBV20-1 T cell receptor beta variable 20-1 other T cell receptor gene Approved 7q34 07q34 "TRBV201|TCRBV20S1|TCRBV2S1" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28567 ENSG00000211747 OTTHUMG00000158899 uc064ist.1 M11955 NG_001333 8650574 TRBV20-1 +HGNC:12197 TRBV20OR9-2 T cell receptor beta variable 20/OR9-2 (non-functional) other T cell receptor gene Approved 9p13.3 09p13.3 "TRBV20/OR9-2|TCRBV20S2|TCRBV2S2O" T-cell receptor, beta variable region 2, orphon TCRBV2O T cell receptor beta variable 20/OR9-2 T cell receptor beta (TRB) orphons 373 1995-01-24 2008-09-11 2016-10-05 6962 ENSG00000205274 OTTHUMG00000019781 uc064sqk.1 L05149 NG_001337 8384723 TRBV20/OR9-2 +HGNC:12198 TRBV21-1 T cell receptor beta variable 21-1 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TRBV211|TCRBV10S1P|TCRBV21S1" "T cell receptor beta variable 21-1|T cell receptor beta variable 21-1 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-02-07 28566 ENSG00000251578 OTTHUMG00000158880 L27608 NG_001333 8650574 PGOHUM00000250971 TRBV21-1 +HGNC:12199 TRBV21OR9-2 T cell receptor beta variable 21/OR9-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 9p13.3 09p13.3 "TRBV21/OR9-2|TCRBV10S2O|TCRBV21S2" T-cell receptor, beta variable region 10, orphon TCRBV10O "T cell receptor beta variable 21/OR9-2|T cell receptor beta variable 21/OR9-2 (non-functional)" T cell receptor beta (TRB) orphons 373 1995-01-24 2012-06-12 2016-10-05 6959 ENSG00000183938 OTTHUMG00000019783 uc064sql.1 L05151 NG_001337 8384723 TRBV21/OR9-2 +HGNC:12200 TRBV22-1 T cell receptor beta variable 22-1 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TCRBV22S1|TCRBV29S1P" TRBV22 "T cell receptor beta variable 22|T cell receptor beta variable 22 pseudogene|T cell receptor beta variable 22-1 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-11 2011-04-15 2014-11-18 28565 ENSG00000240578 OTTHUMG00000158895 L36092 NG_001333 8650574 TRBV22-1 +HGNC:18740 TRBV22OR9-2 T cell receptor beta variable 22/OR9-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 9p13.3 09p13.3 "TCRBV29S2O|TCRBV22S2|TRBV22/OR9-2" "T cell receptor beta variable 22/OR9-2|T cell receptor beta variable 22/OR9-2 pseudogene" T cell receptor beta (TRB) orphons 373 2002-06-12 2011-04-15 2016-10-05 246283 ENSG00000234122 OTTHUMG00000000400 AF029308 NG_001337 8384723 TRBV22/OR9-2 +HGNC:12201 TRBV23-1 T cell receptor beta variable 23-1 (non-functional) other T cell receptor gene Approved 7q34 07q34 "TRBV231|TCRBV19S1P|TCRBV23S1" T cell receptor beta variable 23-1 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-11 2012-02-07 28564 ENSG00000211749 OTTHUMG00000158920 uc064isu.1 L36092 NG_001333 8650574 TRBV23-1 +HGNC:12202 TRBV23OR9-2 T cell receptor beta variable 23/OR9-2 (non-functional) other T cell receptor gene Approved 9p13.3 09p13.3 "TRBV23/OR9-2|TRBV23OR92|TCRBV19S2O|TCRBV23S2" T cell receptor beta variable 23/OR9-2 T cell receptor beta (TRB) orphons 373 2000-05-15 2008-09-11 2016-10-05 28552 ENSG00000229063 OTTHUMG00000019774 uc064sqm.1 L27615 NG_001337 8384723 TRBV23/OR9-2 +HGNC:12203 TRBV24-1 T cell receptor beta variable 24-1 other T cell receptor gene Approved 7q34 07q34 "TRBV241|TCRBV15S1|TCRBV24S1" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28563 ENSG00000211750 OTTHUMG00000158889 uc003vzx.4 M11951 NG_001333 8650574 TRBV24-1 +HGNC:12204 TRBV24OR9-2 T cell receptor beta variable 24/OR9-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 9p13.3 09p13.3 "TRBV24/OR9-2|TCRBV15S2O|TCRBV24S2" T-cell receptor, beta variable region 15, orphan, T-cell receptor, beta variable region 15, orphon TCRBV15O "T cell receptor beta variable 24/OR9-2|T cell receptor beta variable 24/OR9-2 pseudogene" T cell receptor beta (TRB) orphons 373 1995-01-24 2011-04-15 2016-10-05 6961 ENSG00000215206 OTTHUMG00000152869 L05153 NG_001337 8384723 PGOHUM00000260499 TRBV24/OR9-2 +HGNC:12205 TRBV25-1 T cell receptor beta variable 25-1 other T cell receptor gene Approved 7q34 07q34 "TRBV251|TCRBV11S1A1T|TCRBV25S1" T cell receptor beta locus at 7q34 372 2000-05-15 2015-08-24 28562 ENSG00000282499 OTTHUMG00000158868 uc284qdw.1 L27610 NG_001333 8650574 TRBV25-1 +HGNC:12206 TRBV25OR9-2 T cell receptor beta variable 25/OR9-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 9p13.3 09p13.3 "TRBV25/OR9-2|TCRBV11S2O|TCRBV25S2" T-cell receptor, beta variable region 11, orphon TCRBV11O "T cell receptor beta variable 25/OR9-2|T cell receptor beta variable 25/OR9-2 pseudogene" T cell receptor beta (TRB) orphons 373 1995-01-24 2011-04-15 2016-10-05 6960 ENSG00000240215 OTTHUMG00000019791 L05152 NG_001337 8384723 TRBV25OR9-2 TRBV25/OR9-2 +HGNC:12207 TRBV26 T cell receptor beta variable 26 (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 "TCRBV26S1|TCRBV28S1P" "T cell receptor beta variable 26|T cell receptor beta variable 26 pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2013-02-18 28561 ENSG00000249912 OTTHUMG00000158928 L36092 NG_001333 8650574 PGOHUM00000263881 TRBV26 +HGNC:15485 TRBV26OR9-2 T cell receptor beta variable 26/OR9-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 9p13.3 09p13.3 "TRBV26/OR9-2|TCRBV28S2O|TCRBV28S2|TCRBV26S2" "T cell receptor beta variable 26/OR9-2|T cell receptor beta variable 26/OR9-2 pseudogene" T cell receptor beta (TRB) orphons 373 2002-06-12 2011-04-15 2016-10-05 246285 ENSG00000231165 OTTHUMG00000000411 AF029308 NG_001337 8384723 PGOHUM00000250519 TRBV26/OR9-2 +HGNC:12208 TRBV27 T cell receptor beta variable 27 other T cell receptor gene Approved 7q34 07q34 "TCRBV14S1|TCRBV27S1" T cell receptor beta locus at 7q34 372 2000-05-15 2012-02-07 28560 ENSG00000211752 OTTHUMG00000158924 uc033amu.2 L36092 NG_001333 8650574 TRBV27 +HGNC:12209 TRBV28 T cell receptor beta variable 28 other T cell receptor gene Approved 7q34 07q34 "TCRBV28S1|TCRBV3S1" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28559 ENSG00000211753 OTTHUMG00000158900 uc033amv.2 U08314 NG_001333 8650574 TRBV28 +HGNC:12210 TRBV29-1 T cell receptor beta variable 29-1 other T cell receptor gene Approved 7q34 07q34 "TRBV291|TCRBV29S1|TCRBV4S1A1T" T cell receptor beta locus at 7q34 372 2000-05-15 2014-11-19 28558 ENSG00000232869 OTTHUMG00000158898 uc033amx.2 L36092 NG_001333 8650574 TRBV29-1 +HGNC:12211 TRBV29OR9-2 T cell receptor beta variable 29/OR9-2 (non-functional) other T cell receptor gene Approved 9p13.3 09p13.3 "TRBV29/OR9-2|TCRBV29S2|TCRBV4S2O" "T-cell receptor, beta cluster, variable region 4, orphon|T-cell receptor, beta variable region 4, orphon" TCRBV4O T cell receptor beta variable 29/OR9-2 T cell receptor beta (TRB) orphons 373 1993-07-13 2008-09-11 2016-10-05 6958 ENSG00000223394 OTTHUMG00000000415 L05150 NG_001337 8384723 PGOHUM00000236443 TRBV29/OR9-2 +HGNC:12214 TRBV30 T cell receptor beta variable 30 (gene/pseudogene) other T cell receptor gene Approved 7q34 07q34 "TCRBV20S1A1N2|TCRBV30S1" T cell receptor beta variable 30 T cell receptor beta locus at 7q34 372 2000-05-15 2008-09-12 2014-11-19 28557 ENSG00000237254 OTTHUMG00000158907 uc022aob.3 L36092 NG_001333 8650574 TRBV30 +HGNC:12247 TRBVA T cell receptor beta variable A (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 TCRBV33S1 "T cell receptor beta variable A|T cell receptor beta variable A pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-02-07 28556 ENSG00000239992 OTTHUMG00000158911 L36092 NG_001333 8650574 TRBVA +HGNC:18741 TRBVAOR9-2 T cell receptor beta variable A/OR9-2 (pseudogene) pseudogene T cell receptor pseudogene Approved 9p21 09p21 "TRBVA/OR9-2|TCRBV33S2" "T cell receptor beta variable A/OR9-2|T cell receptor beta variable A/OR9-2 pseudogene" T cell receptor beta (TRB) orphons 373 2002-06-12 2011-04-15 2012-02-07 246286 AF029308 NG_001337 TRBVA/OR9-2 +HGNC:12248 TRBVB T cell receptor beta variable B (pseudogene) pseudogene T cell receptor pseudogene Approved 7q34 07q34 TCRBV34S1 "T cell receptor beta variable B|T cell receptor beta variable B pseudogene" T cell receptor beta locus at 7q34 372 2000-05-15 2011-04-15 2012-02-07 28555 ENSG00000241911 OTTHUMG00000158869 L36092 NG_001333 8650574 TRBVB +HGNC:50321 TRBVC T cell receptor beta variable C other T cell receptor gene Approved 7q34 07q34 T cell receptor beta locus at 7q34 372 2014-04-09 2014-04-09 103106900 L36092 TRBVC +HGNC:12249 TRBVOR9@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-17 +HGNC:35083 TRC-ACA1-1 transfer RNA-Cys (ACA) 1-1 non-coding RNA RNA, transfer Approved 5q33.1 05q33.1 TRNAC32P transfer RNA cysteine 32 (anticodon ACA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189508 HG983684 NG_008566 +HGNC:34706 TRC-GCA1-1 transfer RNA-Cys (GCA) 1-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC10 transfer RNA cysteine 10 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189144 HG983685 +HGNC:34760 TRC-GCA2-1 transfer RNA-Cys (GCA) 2-1 non-coding RNA RNA, transfer Approved 4 04 "TRNAC16|TRC-GCA2-4" "transfer RNA cysteine 16 (anticodon GCA)|transfer RNA-Cys (GCA) 2-4" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189197 HG983689 +HGNC:34611 TRC-GCA2-2 transfer RNA-Cys (GCA) 2-2 non-coding RNA RNA, transfer Approved 17 17 "TRNAC5|TRC-GCA2-1" "transfer RNA cysteine 5 (anticodon GCA)|transfer RNA-Cys (GCA) 2-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189052 HG983686 +HGNC:34666 TRC-GCA2-3 transfer RNA-Cys (GCA) 2-3 non-coding RNA RNA, transfer Approved 17 17 "TRNAC9|TRC-GCA2-2" "transfer RNA cysteine 9 (anticodon GCA)|transfer RNA-Cys (GCA) 2-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189105 HG983687 +HGNC:34983 TRC-GCA2-4 transfer RNA-Cys (GCA) 2-4 non-coding RNA RNA, transfer Approved 17 17 "TRNAC29|TRC-GCA2-3" "transfer RNA cysteine 29 (anticodon GCA)|transfer RNA-Cys (GCA) 2-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189414 HG983688 +HGNC:34658 TRC-GCA3-1 transfer RNA-Cys (GCA) 3-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC8 transfer RNA cysteine 8 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189097 HG983690 +HGNC:34650 TRC-GCA4-1 transfer RNA-Cys (GCA) 4-1 non-coding RNA RNA, transfer Approved 17 17 TRNAC7 transfer RNA cysteine 7 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189090 HG983691 +HGNC:34717 TRC-GCA5-1 transfer RNA-Cys (GCA) 5-1 non-coding RNA RNA, transfer Approved 15 15 TRNAC12 transfer RNA cysteine 12 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189155 HG983692 +HGNC:34741 TRC-GCA6-1 transfer RNA-Cys (GCA) 6-1 non-coding RNA RNA, transfer Approved 3 03 TRNAC14 transfer RNA cysteine 14 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189179 HG983693 +HGNC:38575 TRC-GCA7-1 transfer RNA-Cys (GCA) 7-1 non-coding RNA RNA, transfer Approved 1 01 TRNAC33 transfer RNA cysteine 33 (anticodon GCA) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 103456508 HG983694 +HGNC:34927 TRC-GCA8-1 transfer RNA-Cys (GCA) 8-1 non-coding RNA RNA, transfer Approved 14 14 TRNAC24 transfer RNA cysteine 24 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189359 HG983695 +HGNC:34813 TRC-GCA9-1 transfer RNA-Cys (GCA) 9-1 non-coding RNA RNA, transfer Approved 3 03 TRNAC18 transfer RNA cysteine 18 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189250 HG983696 +HGNC:34982 TRC-GCA9-2 transfer RNA-Cys (GCA) 9-2 non-coding RNA RNA, transfer Approved 7 07 TRNAC28 transfer RNA cysteine 28 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189413 HG983697 +HGNC:34944 TRC-GCA9-3 transfer RNA-Cys (GCA) 9-3 non-coding RNA RNA, transfer Approved 7 07 TRNAC26 transfer RNA cysteine 26 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189376 HG983698 +HGNC:34947 TRC-GCA9-4 transfer RNA-Cys (GCA) 9-4 non-coding RNA RNA, transfer Approved 7 07 TRNAC27 transfer RNA cysteine 27 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189379 HG983699 +HGNC:34871 TRC-GCA10-1 transfer RNA-Cys (GCA) 10-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC21 transfer RNA cysteine 21 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189305 HG983700 +HGNC:34566 TRC-GCA11-1 transfer RNA-Cys (GCA) 11-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC2 transfer RNA cysteine 2 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189008 HG983701 +HGNC:34634 TRC-GCA12-1 transfer RNA-Cys (GCA) 12-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC6 transfer RNA cysteine 6 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189075 HG983702 +HGNC:34925 TRC-GCA13-1 transfer RNA-Cys (GCA) 13-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC23 transfer RNA cysteine 23 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189357 HG983703 +HGNC:35005 TRC-GCA14-1 transfer RNA-Cys (GCA) 14-1 non-coding RNA RNA, transfer Approved 17 17 TRNAC30 transfer RNA cysteine 30 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189435 HG983704 +HGNC:34830 TRC-GCA15-1 transfer RNA-Cys (GCA) 15-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC19 transfer RNA cysteine 19 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189267 HG983705 +HGNC:34708 TRC-GCA16-1 transfer RNA-Cys (GCA) 16-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC11 transfer RNA cysteine 11 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189146 HG983706 +HGNC:34855 TRC-GCA17-1 transfer RNA-Cys (GCA) 17-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC20 transfer RNA cysteine 20 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189289 HG983707 +HGNC:34608 TRC-GCA18-1 transfer RNA-Cys (GCA) 18-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC4 transfer RNA cysteine 4 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189049 HG983708 +HGNC:34739 TRC-GCA19-1 transfer RNA-Cys (GCA) 19-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC13 transfer RNA cysteine 13 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189177 HG983709 +HGNC:34923 TRC-GCA20-1 transfer RNA-Cys (GCA) 20-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC22 transfer RNA cysteine 22 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189355 HG983710 +HGNC:34943 TRC-GCA21-1 transfer RNA-Cys (GCA) 21-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC25 transfer RNA cysteine 25 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189375 HG983711 +HGNC:34588 TRC-GCA22-1 transfer RNA-Cys (GCA) 22-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC3 transfer RNA cysteine 3 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189029 HG983712 +HGNC:34757 TRC-GCA23-1 transfer RNA-Cys (GCA) 23-1 non-coding RNA RNA, transfer Approved 7 07 TRNAC15 transfer RNA cysteine 15 (anticodon GCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189194 HG983713 +HGNC:12250 TRC-GCA24-1 transfer RNA-Cys (GCA) 24-1 non-coding RNA RNA, transfer Approved 17q12 17q12 "TRC|TRNAC1" "tRNA cysteine|transfer RNA cysteine|transfer RNA cysteine 1 (anticodon GCA)" Cytoplasmic transfer RNAs 842 1994-02-18 2014-06-19 2014-06-19 2014-06-19 7183 HG983714 +HGNC:35017 TRC-GCA25-1 transfer RNA-Cys (GCA) 25-1 non-coding RNA RNA, transfer Approved 3p24.3 03p24.3 TRNAC31P transfer RNA cysteine 31 (anticodon GCA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189447 HG983715 NG_008503 +HGNC:12252 TRD T cell receptor delta locus protein-coding gene gene with protein product Approved 14q11.2 14q11.2 TCRDV1 "TCRD|TRD@" T cell receptor delta locus at 14q11.2 374 1988-07-04 2013-03-05 2013-03-05 6964 M21624 NG_001332 "2456576|2439914" 330897 +HGNC:34770 TRD-GTC1-1 transfer RNA-Asp (GTC) 1-1 non-coding RNA RNA, transfer Approved 12 12 TRNAD10 transfer RNA aspartic acid 10 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189207 HG983664 +HGNC:34981 TRD-GTC2-1 transfer RNA-Asp (GTC) 2-1 non-coding RNA RNA, transfer Approved 1 01 TRNAD18 transfer RNA aspartic acid 18 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189412 HG983665 +HGNC:34798 TRD-GTC2-2 transfer RNA-Asp (GTC) 2-2 non-coding RNA RNA, transfer Approved 1 01 TRNAD11 transfer RNA aspartic acid 11 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189235 HG983666 +HGNC:34856 TRD-GTC2-3 transfer RNA-Asp (GTC) 2-3 non-coding RNA RNA, transfer Approved 1 01 TRNAD13 transfer RNA aspartic acid 13 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189290 HG983667 +HGNC:34696 TRD-GTC2-4 transfer RNA-Asp (GTC) 2-4 non-coding RNA RNA, transfer Approved 1 01 TRNAD6 transfer RNA aspartic acid 6 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189134 HG983668 +HGNC:34682 TRD-GTC2-5 transfer RNA-Asp (GTC) 2-5 non-coding RNA RNA, transfer Approved 1 01 TRNAD5 transfer RNA aspartic acid 5 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189120 HG983669 +HGNC:34720 TRD-GTC2-6 transfer RNA-Asp (GTC) 2-6 non-coding RNA RNA, transfer Approved 6 06 "TRNAD8|TRD-GTC2-10" "transfer RNA aspartic acid 8 (anticodon GUC)|transfer RNA-Asp (GTC) 2-10" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189158 HG983674 +HGNC:34858 TRD-GTC2-7 transfer RNA-Asp (GTC) 2-7 non-coding RNA RNA, transfer Approved 6 06 "TRNAD14|TRD-GTC2-11" "transfer RNA aspartic acid 14 (anticodon GUC)|transfer RNA-Asp (GTC) 2-11" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189292 HG983675 +HGNC:34802 TRD-GTC2-8 transfer RNA-Asp (GTC) 2-8 non-coding RNA RNA, transfer Approved 12 12 "TRNAD12|TRD-GTC2-6" "transfer RNA aspartic acid 12 (anticodon GUC)|transfer RNA-Asp (GTC) 2-6" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189239 HG983670 +HGNC:34911 TRD-GTC2-9 transfer RNA-Asp (GTC) 2-9 non-coding RNA RNA, transfer Approved 12 12 "TRNAD15|TRD-GTC2-7" "transfer RNA aspartic acid 15 (anticodon GUC)|transfer RNA-Asp (GTC) 2-7" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189343 HG983671 +HGNC:34915 TRD-GTC2-10 transfer RNA-Asp (GTC) 2-10 non-coding RNA RNA, transfer Approved 12 12 "TRNAD16|TRD-GTC2-8" "transfer RNA aspartic acid 16 (anticodon GUC)|transfer RNA-Asp (GTC) 2-8" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189347 HG983672 +HGNC:34951 TRD-GTC2-11 transfer RNA-Asp (GTC) 2-11 non-coding RNA RNA, transfer Approved 17 17 "TRNAD17|TRD-GTC2-9" "transfer RNA aspartic acid 17 (anticodon GUC)|transfer RNA-Asp (GTC) 2-9" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189383 HG983673 +HGNC:34763 TRD-GTC3-1 transfer RNA-Asp (GTC) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAD9 transfer RNA aspartic acid 9 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189200 HG983676 +HGNC:34551 TRD-GTC4-1 transfer RNA-Asp (GTC) 4-1 non-coding RNA RNA, transfer Approved 9 09 TRNAD2 transfer RNA aspartic acid 2 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100188994 HG983677 +HGNC:34620 TRD-GTC5-1 transfer RNA-Asp (GTC) 5-1 non-coding RNA RNA, transfer Approved 5 05 TRNAD3 transfer RNA aspartic acid 3 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189061 HG983678 +HGNC:34712 TRD-GTC6-1 transfer RNA-Asp (GTC) 6-1 non-coding RNA RNA, transfer Approved 3 03 TRNAD7 transfer RNA aspartic acid 7 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189150 HG983679 +HGNC:34647 TRD-GTC7-1 transfer RNA-Asp (GTC) 7-1 non-coding RNA RNA, transfer Approved 1 01 TRNAD4 transfer RNA aspartic acid 4 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189087 HG983680 +HGNC:35000 TRD-GTC8-1 transfer RNA-Asp (GTC) 8-1 non-coding RNA RNA, transfer Approved 12 12 TRNAD19 transfer RNA aspartic acid 19 (anticodon GUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189431 HG983681 +HGNC:12251 TRD-GTC9-1 transfer RNA-Asp (GTC) 9-1 non-coding RNA RNA, transfer Approved 1q23.3 01q23.3 "TRD|TRNAD1" "tRNA aspartic acid|transfer RNA aspartic acid 1 (anticodon GUC)" Cytoplasmic transfer RNAs 842 1994-02-18 2014-06-19 2014-06-19 2014-06-19 7192 HG983682 +HGNC:35070 TRD-GTC10-1 transfer RNA-Asp (GTC) 10-1 non-coding RNA RNA, transfer Approved 1q23.3 01q23.3 TRNAD20P transfer RNA aspartic acid 20 (anticodon GUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189495 HG983683 NG_008553 +HGNC:12253 TRDC T cell receptor delta constant other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor delta locus at 14q11.2 374 2000-05-15 2014-11-19 28526 ENSG00000211829 OTTHUMG00000170905 uc058zfj.1 M22148 NG_001332 B7Z8K6 186810 TRDC +HGNC:12254 TRDD1 T cell receptor delta diversity 1 other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor delta locus at 14q11.2 374 2000-05-15 2014-11-19 28525 ENSG00000223997 OTTHUMG00000170844 uc058zfb.1 M23325 NG_001332 2974163 TRDD1 +HGNC:12255 TRDD2 T cell receptor delta diversity 2 other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor delta locus at 14q11.2 374 2000-05-15 2014-11-19 28524 ENSG00000237235 OTTHUMG00000170845 uc058zfc.1 M22153 NG_001332 3413078 TRDD2 +HGNC:12256 TRDD3 T cell receptor delta diversity 3 other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor delta locus at 14q11.2 374 2000-05-15 2014-11-18 28523 ENSG00000228985 OTTHUMG00000170846 uc058zfd.1 M22152 NG_001332 3413078 TRDD3 +HGNC:12257 TRDJ1 T cell receptor delta joining 1 other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor delta locus at 14q11.2 374 2000-05-15 2012-02-07 28522 ENSG00000211825 OTTHUMG00000170847 uc058zfe.1 M20289 NG_001332 2836865 TRDJ1 +HGNC:12258 TRDJ2 T cell receptor delta joining 2 other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor delta locus at 14q11.2 374 2000-05-15 2012-02-07 28521 ENSG00000211827 OTTHUMG00000170903 uc058zfg.1 L36386 NG_001332 2974163 TRDJ2 +HGNC:12259 TRDJ3 T cell receptor delta joining 3 other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor delta locus at 14q11.2 374 2000-05-15 2012-02-07 28520 ENSG00000211828 OTTHUMG00000170904 uc058zfh.1 M21508 NG_001332 3186718 TRDJ3 +HGNC:12260 TRDJ4 T cell receptor delta joining 4 other T cell receptor gene Approved 14q11.2 14q11.2 T cell receptor delta locus at 14q11.2 374 2000-05-15 2012-02-07 28519 ENSG00000211826 OTTHUMG00000170902 uc058zff.1 NG_001332 8207230 TRDJ4 +HGNC:2977 TRDMT1 tRNA aspartic acid methyltransferase 1 protein-coding gene gene with protein product Approved 10p13 10p13 RNMT1 tRNA (cytosine(38)-C(5))-methyltransferase DNMT2 DNA (cytosine-5-)-methyltransferase 2 1998-05-07 2006-10-23 2006-10-23 2016-10-05 1787 ENSG00000107614 OTTHUMG00000017745 uc001iop.4 AJ223333 NM_004412 CCDS7114 O14717 "9425235|9763678|16424344" MGI:1274787 RGD:1306292 TRDMT1 602478 2.1.1.204 +HGNC:12261 TRDN triadin protein-coding gene gene with protein product Approved 6q22.31 06q22.31 1999-12-17 2015-09-08 10345 ENSG00000186439 OTTHUMG00000015497 uc003pzj.2 U18985 NM_001251987 "CCDS59035|CCDS75511|CCDS55053|CCDS59034" Q13061 7588753 MGI:1924007 RGD:619856 TRDN 603283 304242 +HGNC:12262 TRDV1 T cell receptor delta variable 1 other T cell receptor gene Approved 14q11.2 14q11.2 hDV101S1 T cell receptor delta locus at 14q11.2 374 2000-05-15 2012-02-07 28518 ENSG00000211804 OTTHUMG00000170651 uc058zee.1 M22198 NG_001332 3186718 TRDV1 +HGNC:12263 TRDV2 T cell receptor delta variable 2 other T cell receptor gene Approved 14q11.2 14q11.2 "hDV102S1|MGC117421" T cell receptor delta locus at 14q11.2 374 2000-05-15 2012-02-07 28517 ENSG00000211821 OTTHUMG00000170843 uc001wdu.3 X15207 NG_001332 2526321 TRDV2 +HGNC:12264 TRDV3 T cell receptor delta variable 3 other T cell receptor gene Approved 14q11.2 14q11.2 hDV103S1 T cell receptor delta locus at 14q11.2 374 2000-05-15 2012-02-07 28516 ENSG00000256590 OTTHUMG00000168896 uc001web.2 M23326 NG_001332 2974163 TRDV3 +HGNC:34952 TRE-CTC1-1 transfer RNA-Glu (CTC) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAE21 transfer RNA glutamic acid 21 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189384 HG983753 +HGNC:34651 TRE-CTC1-2 transfer RNA-Glu (CTC) 1-2 non-coding RNA RNA, transfer Approved 1 01 TRNAE13 transfer RNA glutamic acid 13 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189091 HG983754 +HGNC:34953 TRE-CTC1-3 transfer RNA-Glu (CTC) 1-3 non-coding RNA RNA, transfer Approved 1 01 TRNAE22 transfer RNA glutamic acid 22 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189385 HG983755 +HGNC:34822 TRE-CTC1-4 transfer RNA-Glu (CTC) 1-4 non-coding RNA RNA, transfer Approved 1 01 TRNAE18 transfer RNA glutamic acid 18 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189259 HG983756 +HGNC:34576 TRE-CTC1-5 transfer RNA-Glu (CTC) 1-5 non-coding RNA RNA, transfer Approved 1 01 TRNAE5 transfer RNA glutamic acid 5 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189017 HG983757 +HGNC:34583 TRE-CTC1-6 transfer RNA-Glu (CTC) 1-6 non-coding RNA RNA, transfer Approved 6 06 TRNAE6 transfer RNA glutamic acid 6 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189024 HG983758 +HGNC:34832 TRE-CTC1-7 transfer RNA-Glu (CTC) 1-7 non-coding RNA RNA, transfer Approved 6 06 TRNAE19 transfer RNA glutamic acid 19 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189269 HG983759 +HGNC:34978 TRE-CTC2-1 transfer RNA-Glu (CTC) 2-1 non-coding RNA RNA, transfer Approved 1 01 TRNAE24 transfer RNA glutamic acid 24 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189409 HG983760 +HGNC:34564 TRE-CTC3-1 transfer RNA-Glu (CTC) 3-1 non-coding RNA RNA, transfer Approved 13 13 TRNAE4 transfer RNA glutamic acid 4 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189007 HG983761 +HGNC:35081 TRE-CTC4-1 transfer RNA-Glu (CTC) 4-1 non-coding RNA RNA, transfer Approved 13q21.1 13q21.1 TRNAE39P transfer RNA glutamic acid 39 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189506 HG983762 NG_008564 +HGNC:34799 TRE-CTC5-1 transfer RNA-Glu (CTC) 5-1 non-coding RNA RNA, transfer Approved 8 08 TRNAE17 transfer RNA glutamic acid 17 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189236 HG983763 +HGNC:34986 TRE-CTC6-1 transfer RNA-Glu (CTC) 6-1 non-coding RNA RNA, transfer Approved 18 18 TRNAE25 transfer RNA glutamic acid 25 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189417 HG983764 +HGNC:35065 TRE-CTC7-1 transfer RNA-Glu (CTC) 7-1 non-coding RNA RNA, transfer Approved 2q24.1 02q24.1 TRNAE36P transfer RNA glutamic acid 36 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189491 HG983765 NG_008549 +HGNC:34603 TRE-CTC8-1 transfer RNA-Glu (CTC) 8-1 non-coding RNA RNA, transfer Approved 3 03 TRNAE9 transfer RNA glutamic acid 9 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189044 HG983766 +HGNC:35069 TRE-CTC9-1 transfer RNA-Glu (CTC) 9-1 non-coding RNA RNA, transfer Approved 2q23.3 02q23.3 TRNAE38P transfer RNA glutamic acid 38 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189494 HG983767 NG_008552 +HGNC:35109 TRE-CTC10-1 transfer RNA-Glu (CTC) 10-1 non-coding RNA RNA, transfer Approved 20p12.1 20p12.1 TRNAE43P transfer RNA glutamic acid 43 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189532 HG983768 NG_008590 +HGNC:35061 TRE-CTC11-1 transfer RNA-Glu (CTC) 11-1 non-coding RNA RNA, transfer Approved 8p23.1 08p23.1 TRNAE35P transfer RNA glutamic acid 35 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189488 HG983769 NG_008546 +HGNC:35010 TRE-CTC12-1 transfer RNA-Glu (CTC) 12-1 non-coding RNA RNA, transfer Approved 3q13.11 03q13.11 TRNAE27P transfer RNA glutamic acid 27 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189440 HG983770 NG_008496 +HGNC:35031 TRE-CTC13-1 transfer RNA-Glu (CTC) 13-1 non-coding RNA RNA, transfer Approved 2q11.1 02q11.1 TRNAE31P transfer RNA glutamic acid 31 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189459 HG983771 NG_008516 +HGNC:35020 TRE-CTC14-1 transfer RNA-Glu (CTC) 14-1 non-coding RNA RNA, transfer Approved 8q13.2 08q13.2 TRNAE28P transfer RNA glutamic acid 28 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189450 HG983772 NG_008506 +HGNC:35104 TRE-CTC15-1 transfer RNA-Glu (CTC) 15-1 non-coding RNA RNA, transfer Approved 2p13.3 02p13.3 TRNAE41P transfer RNA glutamic acid 41 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189527 HG983773 NG_008585 +HGNC:35105 TRE-CTC16-1 transfer RNA-Glu (CTC) 16-1 non-coding RNA RNA, transfer Approved 12q24.21 12q24.21 TRNAE42P transfer RNA glutamic acid 42 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189528 HG983774 NG_008586 +HGNC:34675 TRE-CTC17-1 transfer RNA-Glu (CTC) 17-1 non-coding RNA RNA, transfer Approved 1 01 TRNAE14 transfer RNA glutamic acid 14 (anticodon CUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189113 HG983775 +HGNC:35067 TRE-CTC18-1 transfer RNA-Glu (CTC) 18-1 non-coding RNA RNA, transfer Approved Xp11.22 Xp11.22 TRNAE37P transfer RNA glutamic acid 37 (anticodon CUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189492 HG983776 NG_008550 +HGNC:34987 TRE-TTC1-1 transfer RNA-Glu (TTC) 1-1 non-coding RNA RNA, transfer Approved 2 02 "TRNAE26|TRE-TTC1-2" "transfer RNA glutamic acid 26 (anticodon UUC)|transfer RNA-Glu (TTC) 1-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189418 HG983778 +HGNC:34901 TRE-TTC1-2 transfer RNA-Glu (TTC) 1-2 non-coding RNA RNA, transfer Approved 13 13 "TRNAE20|TRE-TTC1-1" "transfer RNA glutamic acid 20 (anticodon UUC)|transfer RNA-Glu (TTC) 1-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189333 HG983777 +HGNC:34589 TRE-TTC2-1 transfer RNA-Glu (TTC) 2-1 non-coding RNA RNA, transfer Approved 13 13 TRNAE7 transfer RNA glutamic acid 7 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189030 HG983779 +HGNC:34622 TRE-TTC2-2 transfer RNA-Glu (TTC) 2-2 non-coding RNA RNA, transfer Approved 15 15 TRNAE11 transfer RNA glutamic acid 11 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189063 HG983780 +HGNC:12265 TRE-TTC3-1 transfer RNA-Glu (TTC) 3-1 non-coding RNA RNA, transfer Approved 1p36.13 01p36.13 "TRE|TRNAE1" "tRNA glutamic acid|transfer RNA glutamic acid 1 (anticodon UUC)" Cytoplasmic transfer RNAs 842 1989-05-11 2014-06-19 2014-06-19 2014-06-19 7193 HG983781 6134271 180640 +HGNC:38581 TRE-TTC4-1 transfer RNA-Glu (TTC) 4-1 non-coding RNA RNA, transfer Approved 1 01 TRNAE44 transfer RNA glutamic acid 44 (anticodon UUC) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 103456506 HG983782 +HGNC:34976 TRE-TTC4-2 transfer RNA-Glu (TTC) 4-2 non-coding RNA RNA, transfer Approved 1 01 TRNAE23 transfer RNA glutamic acid 23 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189407 HG983783 +HGNC:34590 TRE-TTC5-1 transfer RNA-Glu (TTC) 5-1 non-coding RNA RNA, transfer Approved 1 01 TRNAE8 transfer RNA glutamic acid 8 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189031 HG983784 +HGNC:35037 TRE-TTC6-1 transfer RNA-Glu (TTC) 6-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAE32P transfer RNA glutamic acid 32 (anticodon UUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189465 HG983785 NG_008523 +HGNC:35028 TRE-TTC7-1 transfer RNA-Glu (TTC) 7-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAE30P transfer RNA glutamic acid 30 (anticodon UUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189457 HG983786 NG_008514 +HGNC:34627 TRE-TTC8-1 transfer RNA-Glu (TTC) 8-1 non-coding RNA RNA, transfer Approved 1 01 TRNAE12 transfer RNA glutamic acid 12 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189068 HG983787 +HGNC:35093 TRE-TTC9-1 transfer RNA-Glu (TTC) 9-1 non-coding RNA RNA, transfer Approved 2q33.2 02q33.2 TRNAE40P transfer RNA glutamic acid 40 (anticodon UUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189518 HG983788 NG_008576 +HGNC:35025 TRE-TTC10-1 transfer RNA-Glu (TTC) 10-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAE29P transfer RNA glutamic acid 29 (anticodon UUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189454 HG983789 NG_008510 +HGNC:34691 TRE-TTC11-1 transfer RNA-Glu (TTC) 11-1 non-coding RNA RNA, transfer Approved 14 14 TRNAE15 transfer RNA glutamic acid 15 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189129 HG983790 +HGNC:34557 TRE-TTC12-1 transfer RNA-Glu (TTC) 12-1 non-coding RNA RNA, transfer Approved 1 01 TRNAE3 transfer RNA glutamic acid 3 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189000 HG983791 +HGNC:34613 TRE-TTC13-1 transfer RNA-Glu (TTC) 13-1 non-coding RNA RNA, transfer Approved 2 02 TRNAE10 transfer RNA glutamic acid 10 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189054 HG983792 +HGNC:35058 TRE-TTC14-1 transfer RNA-Glu (TTC) 14-1 non-coding RNA RNA, transfer Approved 1q21.1 01q21.1 TRNAE34P transfer RNA glutamic acid 34 (anticodon UUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189485 HG983793 NG_008543 +HGNC:35057 TRE-TTC15-1 transfer RNA-Glu (TTC) 15-1 non-coding RNA RNA, transfer Approved 6q26 06q26 TRNAE33P transfer RNA glutamic acid 33 (anticodon UUC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189484 HG983794 NG_008542 +HGNC:34773 TRE-TTC16-1 transfer RNA-Glu (TTC) 16-1 non-coding RNA RNA, transfer Approved 1 01 TRNAE16 transfer RNA glutamic acid 16 (anticodon UUC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189210 HG983795 +HGNC:12266 TREH trehalase protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "TRE|TREA|MGC129621" "alpha,alpha-trehalase|alpha,alpha-trehalose glucohydrolase" trehalase (brush-border membrane glycoprotein) 1999-09-07 2015-11-09 2015-11-09 11181 ENSG00000118094 OTTHUMG00000166409 uc031ygn.2 AB000824 NM_007180 "CCDS73401|CCDS73402" O43280 9427547 MGI:1926230 RGD:61831 TREH 275360 158077 3.2.1.28 +HGNC:51907 TREHP1 trehalase pseudogene 1 pseudogene pseudogene Approved 11q23.3 11q23.3 2015-09-21 2015-09-21 768086 ENSG00000255239 OTTHUMG00000166410 NG_005770 PGOHUM00000290720 +HGNC:17760 TREM1 triggering receptor expressed on myeloid cells 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "TREM-1|CD354" "CD molecules|V-set domain containing" "471|590" 2002-08-09 2014-11-19 54210 ENSG00000124731 OTTHUMG00000014674 uc003oqf.3 AF196329 NM_018643 "CCDS4854|CCDS56427|CCDS59499" Q9NP99 "11922939|10799849" MGI:1930005 RGD:1309467 TREM1 605085 +HGNC:17761 TREM2 triggering receptor expressed on myeloid cells 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "TREM-2|Trem2a|Trem2b|Trem2c" triggering receptor expressed on myeloid cells 2a V-set domain containing 590 2002-08-09 2002-08-15 2016-10-12 54209 ENSG00000095970 OTTHUMG00000014671 uc003opy.4 AF213457 NM_018965 "CCDS4852|CCDS64422" Q9NZC2 "10799849|12080485" MGI:1913150 RGD:1309841 LRG_631|http://www.lrg-sequence.org/LRG/LRG_631 TREM2 605086 120249 +HGNC:20434 TREML1 triggering receptor expressed on myeloid cells like 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "TLT1|dJ238O23.3" TREM-like transcript 1 triggering receptor expressed on myeloid cells-like 1 V-set domain containing 590 2003-07-08 2015-11-23 2015-11-23 340205 ENSG00000161911 OTTHUMG00000016231 uc011duc.4 AF534822 NM_178174 "CCDS4851|CCDS64420|CCDS64421" Q86YW5 "12393607|12645956" MGI:1918576 RGD:1565175 TREML1 609714 +HGNC:21092 TREML2 triggering receptor expressed on myeloid cells like 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "FLJ13693|TLT2|dJ238O23.1" TREM-like transcript 2 C6orf76 "chromosome 6 open reading frame 76|triggering receptor expressed on myeloid cells-like 2" V-set domain containing 590 2003-05-19 2004-04-16 2015-11-23 2016-04-25 79865 ENSG00000112195 OTTHUMG00000016349 uc010jxm.3 AK023755 NM_024807 CCDS4853 Q5T2D2 12645956 MGI:2147038 RGD:1587039 TREML2 609715 +HGNC:30806 TREML3P triggering receptor expressed on myeloid cells like 3, pseudogene pseudogene pseudogene Approved 6p21.1 06p21.1 TLT3 TREM like transcript 3 TREML3 "triggering receptor expressed on myeloid cells-like 3|triggering receptor expressed on myeloid cells-like 3, pseudogene" 2004-04-14 2012-04-20 2015-11-23 2015-11-23 340206 ENSG00000184106 OTTHUMG00000177313 AF534825 NR_027256 12645956 609716 PGOHUM00000243171 +HGNC:30807 TREML4 triggering receptor expressed on myeloid cells like 4 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 TLT4 TREM like transcript 4 triggering receptor expressed on myeloid cells-like 4 V-set domain containing 590 2004-07-26 2015-11-23 2015-11-23 285852 ENSG00000188056 OTTHUMG00000016408 uc003oqc.3 AF534826 XR_001743356 CCDS34446 Q6UXN2 12645956 MGI:1923239 RGD:1587021 TREML4 614664 +HGNC:30808 TREML5P triggering receptor expressed on myeloid cells like 5, pseudogene pseudogene pseudogene Approved 6p21.1 06p21.1 TLT5 TREM like transcript 5 "TREML2P|TREML2P1" "triggering receptor expressed on myeloid cells-like 2 pseudogene|triggering receptor expressed on myeloid cells-like 2 pseudogene 1|triggering receptor expressed on myeloid cells-like 5, pseudogene" 2004-04-14 2012-04-20 2015-11-23 2015-11-23 221438 ENSG00000225690 OTTHUMG00000154701 AF534827 NR_002794 12645956 PGOHUM00000243619 +HGNC:18273 TRERF1 transcriptional regulating factor 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "TReP-132|HSA277276|RAPA|dJ139D8.5" BCAR2 breast cancer anti-estrogen resistance 2 Myb/SANT domain containing 532 2003-11-26 2016-10-05 55809 ENSG00000124496 OTTHUMG00000014698 uc003osd.3 AF297872 NM_033502 "CCDS4867|CCDS75455" Q96PN7 11349124 MGI:2442086 RGD:1307167 TRERF1 610322 +HGNC:44307 TRERNA1 translation regulatory long non-coding RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 "ncRNA-a7|treRNA" translational regulatory long non-coding RNA LINC00651 long intergenic non-protein coding RNA 651 Long non-coding RNAs 788 2012-08-09 2013-08-28 2013-08-28 2014-10-22 100887755 ENSG00000231265 OTTHUMG00000032711 "AI968488|BX118093" NR_051976 "20887892|23974796" LOC100887755 +HGNC:12269 TREX1 three prime repair exonuclease 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 DRN3 AGS1 Aicardi-Goutieres syndrome 1 Exonucleases 544 2000-05-17 2016-10-12 11277 ENSG00000213689 OTTHUMG00000156205 uc062jhw.1 AF151105 NM_016381 "CCDS2769|CCDS59451|CCDS43086" Q9NSU2 "10391904|10393201|16845398" MGI:1328317 RGD:1311998 "LOVD - Leiden Open Variation Database|http://chromium.liacs.nl/LOVD2/home.php?select_db=TREX1|LRG_282|http://www.lrg-sequence.org/LRG/LRG_282" TREX1 606609 120255 +HGNC:12270 TREX2 three prime repair exonuclease 2 protein-coding gene gene with protein product Approved Xq28 Xq28 Exonucleases 544 2000-05-17 2014-11-19 11219 ENSG00000183479 OTTHUMG00000159319 uc065bsy.1 AF151107 NM_080701 CCDS35437 Q9BQ50 10391904 MGI:1346343 RGD:1562245 TREX2 300370 +HGNC:34699 TRF-GAA1-1 transfer RNA-Phe (GAA) 1-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAF3|TRF-GAA1-5" "transfer RNA phenylalanine 3 (anticodon GAA)|transfer RNA-Phe (GAA) 1-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189137 HG983964 +HGNC:34817 TRF-GAA1-2 transfer RNA-Phe (GAA) 1-2 non-coding RNA RNA, transfer Approved 6 06 "TRNAF7|TRF-GAA1-6" "transfer RNA phenylalanine 7 (anticodon GAA)|transfer RNA-Phe (GAA) 1-6" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189254 HG983965 +HGNC:34984 TRF-GAA1-3 transfer RNA-Phe (GAA) 1-3 non-coding RNA RNA, transfer Approved 11 11 "TRNAF11|TRF-GAA1-1" "transfer RNA phenylalanine 11 (anticodon GAA)|transfer RNA-Phe (GAA) 1-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189415 HG983960 +HGNC:33259 TRF-GAA1-4 transfer RNA-Phe (GAA) 1-4 non-coding RNA RNA, transfer Approved 12q24.31 12q24.31 "TRNAF2|TRF-GAA1-2" "transfer RNA phenylalanine 2 (anticodon GAA)|transfer RNA-Phe (GAA) 1-2" Cytoplasmic transfer RNAs 842 2007-02-01 2016-02-15 2016-02-15 2016-02-15 100009606 HG983961 1191278 +HGNC:34814 TRF-GAA1-5 transfer RNA-Phe (GAA) 1-5 non-coding RNA RNA, transfer Approved 13 13 "TRNAF6|TRF-GAA1-3" "transfer RNA phenylalanine 6 (anticodon GAA)|transfer RNA-Phe (GAA) 1-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189251 HG983962 +HGNC:34873 TRF-GAA1-6 transfer RNA-Phe (GAA) 1-6 non-coding RNA RNA, transfer Approved 19 19 "TRNAF10|TRF-GAA1-4" "transfer RNA phenylalanine 10 (anticodon GAA)|transfer RNA-Phe (GAA) 1-4" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189306 HG983963 +HGNC:33255 TRF-GAA2-1 transfer RNA-Phe (GAA) 2-1 non-coding RNA RNA, transfer Approved 11q12.1 11q12.1 TRNAF1 transfer RNA phenylalanine 1 (anticodon GAA) Cytoplasmic transfer RNAs 842 2007-02-01 2014-06-19 2014-06-19 2014-06-19 100009605 HG983966 3678837 +HGNC:34732 TRF-GAA3-1 transfer RNA-Phe (GAA) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAF5 transfer RNA phenylalanine 5 (anticodon GAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189170 HG983967 +HGNC:34859 TRF-GAA4-1 transfer RNA-Phe (GAA) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAF9 transfer RNA phenylalanine 9 (anticodon GAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189293 HG983968 +HGNC:34707 TRF-GAA5-1 transfer RNA-Phe (GAA) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAF4 transfer RNA phenylalanine 4 (anticodon GAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189145 HG983969 +HGNC:34825 TRF-GAA6-1 transfer RNA-Phe (GAA) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAF8 transfer RNA phenylalanine 8 (anticodon GAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189262 HG983970 +HGNC:34990 TRF-GAA7-1 transfer RNA-Phe (GAA) 7-1 non-coding RNA RNA, transfer Approved 6 06 TRNAF12 transfer RNA phenylalanine 12 (anticodon GAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189421 HG983971 +HGNC:35016 TRF-GAA8-1 transfer RNA-Phe (GAA) 8-1 non-coding RNA RNA, transfer Approved 6q14.1 06q14.1 TRNAF13P transfer RNA phenylalanine 13 (anticodon GAA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189446 HG983972 NG_008502 +HGNC:35110 TRF-GAA9-1 transfer RNA-Phe (GAA) 9-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAF17P transfer RNA phenylalanine 17 (anticodon GAA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189533 HG983973 NG_008591 +HGNC:35072 TRF-GAA10-1 transfer RNA-Phe (GAA) 10-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAF16P transfer RNA phenylalanine 16 (anticodon GAA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189497 HG983974 NG_008555 +HGNC:35045 TRF-GAA11-1 transfer RNA-Phe (GAA) 11-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNAF15P transfer RNA phenylalanine 15 (anticodon GAA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189472 HG983975 NG_008530 +HGNC:35044 TRF-GAA12-1 transfer RNA-Phe (GAA) 12-1 non-coding RNA RNA, transfer Approved 8q24.13 08q24.13 TRNAF14P transfer RNA phenylalanine 14 (anticodon GAA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189471 HG983976 NG_008529 +HGNC:12271 TRG T cell receptor gamma locus protein-coding gene gene with protein product Approved 7p14 07p14 "T-cell antigen receptor, gamma polypeptide|T-cell receptor, gamma cluster|T-cell rearranging gene, gamma" "TCRG|TRG@" T cell receptor gamma locus at 7p14 375 1986-01-01 2013-03-05 2013-03-05 6965 NG_001336 "2526744|3102973" 330902 +HGNC:48974 TRG-AS1 T cell receptor gamma locus antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7p14.1 07p14.1 TRG antisense RNA 1 2013-07-23 2013-07-23 2014-02-12 100506776 ENSG00000281103 OTTHUMG00000189585 NR_040085 +HGNC:38580 TRG-CCC1-1 transfer RNA-Gly (CCC) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAG37 transfer RNA glycine 37 (anticodon CCC) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 103456505 HG983796 +HGNC:34864 TRG-CCC1-2 transfer RNA-Gly (CCC) 1-2 non-coding RNA RNA, transfer Approved 1 01 TRNAG28 transfer RNA glycine 28 (anticodon CCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189298 HG983797 +HGNC:34794 TRG-CCC2-1 transfer RNA-Gly (CCC) 2-1 non-coding RNA RNA, transfer Approved 2 02 "TRNAG22|TRG-CCC2-2" "transfer RNA glycine 22 (anticodon CCC)|transfer RNA-Gly (CCC) 2-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189231 HG983799 +HGNC:14183 TRG-CCC2-2 transfer RNA-Gly (CCC) 2-2 non-coding RNA RNA, transfer Approved 16p13.3 16p13.3 "TRG4|TRNAG4|TRG-CCC2-1" "tRNA glycine 4|transfer RNA glycine 4 (anticodon CCC)|transfer RNA-Gly (CCC) 2-1" Cytoplasmic transfer RNAs 842 2000-12-21 2016-02-15 2016-02-15 2016-02-15 64717 HG983798 +HGNC:34841 TRG-CCC3-1 transfer RNA-Gly (CCC) 3-1 non-coding RNA RNA, transfer Approved 17 17 TRNAG26 transfer RNA glycine 26 (anticodon CCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189277 HG983800 +HGNC:35059 TRG-CCC4-1 transfer RNA-Gly (CCC) 4-1 non-coding RNA RNA, transfer Approved 1p36.13 01p36.13 "TRNAV35P|TRNAG36" "transfer RNA valine 35 (anticodon CAC) pseudogene|transfer RNA glycine 36 (anticodon CCC)" Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189486 HG983801 NG_008544 +HGNC:34604 TRG-CCC5-1 transfer RNA-Gly (CCC) 5-1 non-coding RNA RNA, transfer Approved 1 01 TRNAG10 transfer RNA glycine 10 (anticodon CCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189045 HG983802 +HGNC:35073 TRG-CCC6-1 transfer RNA-Gly (CCC) 6-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAG34P transfer RNA glycine 34 (anticodon CCC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189498 HG983803 NG_008556 +HGNC:35030 TRG-CCC7-1 transfer RNA-Gly (CCC) 7-1 non-coding RNA RNA, transfer Approved 2p25.1 02p25.1 TRNAG32P transfer RNA glycine 32 (anticodon CCC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189458 HG983804 NG_008515 +HGNC:50798 TRG-CCC8-1 transfer RNA-Gly (CCC) 8-1 non-coding RNA RNA, transfer Approved 1 not on reference assembly 01 not on reference assembly Cytoplasmic transfer RNAs 842 2014-07-05 2014-07-11 103539958 HG983805 +HGNC:34934 TRG-GCC1-1 transfer RNA-Gly (GCC) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAG30 transfer RNA glycine 30 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189366 HG983806 +HGNC:34815 TRG-GCC1-2 transfer RNA-Gly (GCC) 1-2 non-coding RNA RNA, transfer Approved 1 01 TRNAG23 transfer RNA glycine 23 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189252 HG983807 +HGNC:34793 TRG-GCC1-3 transfer RNA-Gly (GCC) 1-3 non-coding RNA RNA, transfer Approved 1 01 TRNAG21 transfer RNA glycine 21 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189230 HG983808 +HGNC:34722 TRG-GCC1-4 transfer RNA-Gly (GCC) 1-4 non-coding RNA RNA, transfer Approved 1 01 TRNAG15 transfer RNA glycine 15 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189160 HG983809 +HGNC:34850 TRG-GCC1-5 transfer RNA-Gly (GCC) 1-5 non-coding RNA RNA, transfer Approved 21 21 TRNAG27 transfer RNA glycine 27 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189284 HG983810 +HGNC:34948 TRG-GCC2-1 transfer RNA-Gly (GCC) 2-1 non-coding RNA RNA, transfer Approved 1 01 TRNAG31 transfer RNA glycine 31 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189380 HG983811 +HGNC:34771 TRG-GCC2-2 transfer RNA-Gly (GCC) 2-2 non-coding RNA RNA, transfer Approved 2 02 "TRNAG19|TRG-GCC2-5" "transfer RNA glycine 19 (anticodon GCC)|transfer RNA-Gly (GCC) 2-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189208 HG983815 +HGNC:34881 TRG-GCC2-3 transfer RNA-Gly (GCC) 2-3 non-coding RNA RNA, transfer Approved 6 06 "TRNAG29|TRG-GCC2-6" "transfer RNA glycine 29 (anticodon GCC)|transfer RNA-Gly (GCC) 2-6" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189314 HG983816 +HGNC:34533 TRG-GCC2-4 transfer RNA-Gly (GCC) 2-4 non-coding RNA RNA, transfer Approved 16q22.1 16q22.1 "TRNAG6|TRG-GCC2-2" "transfer RNA glycine 6 (anticodon GCC)|transfer RNA-Gly (GCC) 2-2" Cytoplasmic transfer RNAs 842 2008-08-20 2016-02-15 2016-02-15 2016-02-15 100188985 HG983812 +HGNC:34725 TRG-GCC2-5 transfer RNA-Gly (GCC) 2-5 non-coding RNA RNA, transfer Approved 16 16 "TRNAG16|TRG-GCC2-3" "transfer RNA glycine 16 (anticodon GCC)|transfer RNA-Gly (GCC) 2-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189163 HG983813 +HGNC:12273 TRG-GCC2-6 transfer RNA-Gly (GCC) 2-6 non-coding RNA RNA, transfer Approved 17p13.1 17p13.1 "TRG2|TRNAG2|TRG-GCC2-4" "tRNA glycine 2|transfer RNA glycine 2|transfer RNA glycine 2 (anticodon GCC)|transfer RNA-Gly (GCC) 2-4" Cytoplasmic transfer RNAs 842 1991-08-18 2016-02-15 2016-02-15 2016-02-15 7196 HG983814 2066114 610407 +HGNC:12282 TRG-GCC3-1 transfer RNA-Gly (GCC) 3-1 non-coding RNA RNA, transfer Approved 16q22.1 16q22.1 "TRGL1|TRG5|TRNAG5" "tRNA glycine (GCC)-like 1|tRNA glycine 5 (anticodon GCC)|transfer RNA glycine 5 (anticodon GCC)" Cytoplasmic transfer RNAs 842 1990-02-24 2014-06-19 2014-06-19 2014-06-19 7198 HG983817 +HGNC:34838 TRG-GCC4-1 transfer RNA-Gly (GCC) 4-1 non-coding RNA RNA, transfer Approved 1 01 TRNAG25 transfer RNA glycine 25 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189274 HG983818 +HGNC:34783 TRG-GCC5-1 transfer RNA-Gly (GCC) 5-1 non-coding RNA RNA, transfer Approved 16 16 TRNAG20 transfer RNA glycine 20 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189220 HG983819 +HGNC:34641 TRG-GCC6-1 transfer RNA-Gly (GCC) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAG12 transfer RNA glycine 12 (anticodon GCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189081 HG983820 +HGNC:12274 TRG-TCC1-1 transfer RNA-Gly (TCC) 1-1 non-coding RNA RNA, transfer Approved 19p13.3 19p13.3 "TRG3|TRNAG3" "tRNA glycine (UCC) 3|tRNA glycine 3 (anticodon UCC)|transfer RNA glycine 3 (anticodon UCC)" Cytoplasmic transfer RNAs 842 1993-05-24 2014-06-19 2014-06-19 2014-06-19 7197 HG983821 1457046 615303 +HGNC:34623 TRG-TCC2-1 transfer RNA-Gly (TCC) 2-1 non-coding RNA RNA, transfer Approved 1 01 TRNAG11 transfer RNA glycine 11 (anticodon UCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189064 HG983822 +HGNC:34823 TRG-TCC2-2 transfer RNA-Gly (TCC) 2-2 non-coding RNA RNA, transfer Approved 1 01 TRNAG24 transfer RNA glycine 24 (anticodon UCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189260 HG983823 +HGNC:34703 TRG-TCC2-3 transfer RNA-Gly (TCC) 2-3 non-coding RNA RNA, transfer Approved 1q23.3 01q23.3 TRNAG13 transfer RNA glycine 13 (anticodon UCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189141 HG983824 +HGNC:34751 TRG-TCC2-4 transfer RNA-Gly (TCC) 2-4 non-coding RNA RNA, transfer Approved 1 01 TRNAG17 transfer RNA glycine 17 (anticodon UCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189188 HG983825 +HGNC:34598 TRG-TCC2-5 transfer RNA-Gly (TCC) 2-5 non-coding RNA RNA, transfer Approved 1 01 TRNAG9 transfer RNA glycine 9 (anticodon UCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189039 HG983826 +HGNC:34570 TRG-TCC2-6 transfer RNA-Gly (TCC) 2-6 non-coding RNA RNA, transfer Approved 1 01 TRNAG8 transfer RNA glycine 8 (anticodon UCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189011 HG983827 +HGNC:34769 TRG-TCC3-1 transfer RNA-Gly (TCC) 3-1 non-coding RNA RNA, transfer Approved 17 17 TRNAG18 transfer RNA glycine 18 (anticodon UCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189206 HG983828 +HGNC:34554 TRG-TCC4-1 transfer RNA-Gly (TCC) 4-1 non-coding RNA RNA, transfer Approved 1 01 TRNAG7 transfer RNA glycine 7 (anticodon UCC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100188997 HG983829 +HGNC:35032 TRG-TCC5-1 transfer RNA-Gly (TCC) 5-1 non-coding RNA RNA, transfer Approved 18q21.31 18q21.31 TRNAG33P transfer RNA glycine 33 (anticodon UCC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189460 HG983830 NG_008517 +HGNC:35086 TRG-TCC6-1 transfer RNA-Gly (TCC) 6-1 non-coding RNA RNA, transfer Approved 18q21.31 18q21.31 TRNAG35P transfer RNA glycine 35 (anticodon UCC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189511 HG983831 NG_008569 +HGNC:12275 TRGC1 T cell receptor gamma constant 1 other T cell receptor gene Approved 7p14.1 07p14.1 C1 T-cell receptor, gamma, constant region C1 TCRGC1 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6966 ENSG00000211689 OTTHUMG00000155219 uc064cxn.1 M14996 NG_001336 P0CF51 2879283 186970 TRGC1 +HGNC:12276 TRGC2 T cell receptor gamma constant 2 other T cell receptor gene Approved 7p14.1 07p14.1 "TRGC2(2X)|TRGC2(3X)" T-cell receptor, gamma, constant region C2 TCRGC2 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6967 ENSG00000227191 OTTHUMG00000155215 uc064cxk.1 M15002 NG_001336 P03986 3458221 615450 TRGC2 +HGNC:12277 TRGJ1 T cell receptor gamma joining 1 other T cell receptor gene Approved 7p14.1 07p14.1 J1 T-cell receptor, gamma, joining segment J1 TCRGJ1 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6968 ENSG00000211690 OTTHUMG00000155214 uc064cxr.1 M12960 NG_001336 3003579 TRGJ1 +HGNC:12278 TRGJ2 T cell receptor gamma joining 2 other T cell receptor gene Approved 7p14.1 07p14.1 J2 T-cell receptor gamma joining segment J2 TCRGJ2 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6969 ENSG00000211687 OTTHUMG00000155217 uc064cxl.1 M12961 NG_001336 3003579 TRGJ2 +HGNC:12279 TRGJP T cell receptor gamma joining P other T cell receptor gene Approved 7p14.1 07p14.1 JP T-cell receptor, gamma, joining segment JP TCRGJP T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6970 ENSG00000211691 OTTHUMG00000155220 uc064cxs.1 M12950 NG_001336 2938743 TRGJP +HGNC:12280 TRGJP1 T cell receptor gamma joining P1 other T cell receptor gene Approved 7p14.1 07p14.1 JP1 "T-cell receptor gamma joining segment JP1|T-cell receptor gamma joining P1" TCRGJP1 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6971 ENSG00000211692 OTTHUMG00000155226 uc064cxt.1 X08084 NG_001336 2969332 TRGJP1 +HGNC:12281 TRGJP2 T cell receptor gamma joining P2 other T cell receptor gene Approved 7p14.1 07p14.1 JP2 T-cell receptor, gamma, joining segment JP2 TCRGJP2 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6972 ENSG00000211688 OTTHUMG00000155222 uc064cxm.1 M16016 NG_001336 2951442 TRGJP2 +HGNC:12283 TRGP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-01-14 +HGNC:12284 TRGV1 T cell receptor gamma variable 1 (non-functional) other T cell receptor gene Approved 7p14.1 07p14.1 V1S1P TCRGV1 "T cell receptor gamma variable 1|T cell receptor gamma variable 1 pseudogene" T cell receptor gamma locus at 7p14 375 1989-05-30 2008-09-12 2016-10-05 6973 ENSG00000211701 OTTHUMG00000155097 uc064cyd.1 M12949 NG_001336 "2938743|2969332" TRGV1 +HGNC:12287 TRGV2 T cell receptor gamma variable 2 other T cell receptor gene Approved 7p14.1 07p14.1 VIS2 T-cell receptor, gamma, variable region V2 TCRGV2 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6974 ENSG00000233306 OTTHUMG00000155105 uc064cyc.1 M13429 NG_001336 "2938743|2969332" TRGV2 +HGNC:12288 TRGV3 T cell receptor gamma variable 3 other T cell receptor gene Approved 7p14.1 07p14.1 V1S3 T-cell receptor, gamma, variable region V3 TCRGV3 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6976 ENSG00000211699 OTTHUMG00000155102 uc064cyb.1 M13430 NG_001336 P03979 "2938743|2969332" TRGV3 +HGNC:12289 TRGV4 T cell receptor gamma variable 4 other T cell receptor gene Approved 7p14.1 07p14.1 V1S4 T-cell receptor, gamma, variable region V4 TCRGV4 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6977 ENSG00000211698 OTTHUMG00000155099 uc064cya.1 X15272 NG_001336 2969332 TRGV4 +HGNC:12290 TRGV5 T cell receptor gamma variable 5 other T cell receptor gene Approved 7p14 07p14 V1S5 T-cell receptor, gamma, variable region V5 TCRGV5 T cell receptor gamma locus at 7p14 375 1989-05-30 2014-11-19 6978 ENSG00000211697 OTTHUMG00000155101 uc022aca.2 M36286 NG_001336 "2902186|2969332" TRGV5 +HGNC:12291 TRGV5P T cell receptor gamma variable 5P (pseudogene) pseudogene T cell receptor pseudogene Approved 7p14.1 07p14.1 V1S5P T-cell receptor, gamma, variable region V5P (pseudogene) TCRGV5P "T cell receptor gamma variable 5P|T cell receptor gamma variable 5 pseudogene|T cell receptor gamma variable 5P pseudogene" T cell receptor gamma locus at 7p14 375 1989-05-30 2011-04-15 2016-10-05 6979 ENSG00000228668 OTTHUMG00000155095 M13431 NG_001336 "2938743|2969332" PGOHUM00000232657 TRGV5P +HGNC:12292 TRGV6 T cell receptor gamma variable 6 (pseudogene) pseudogene T cell receptor pseudogene Approved 7p14.1 07p14.1 "V1S5P|TCRGV5P" T-cell receptor, gamma, variable region V5P (pseudogene) TCRGV6 "T cell receptor gamma variable 6|T cell receptor gamma variable 6 pseudogene" T cell receptor gamma locus at 7p14 375 1989-05-30 2011-04-15 2016-10-05 6980 ENSG00000226212 OTTHUMG00000155096 M13432 NG_001336 "2938743|2969332" PGOHUM00000232656 TRGV6 +HGNC:12293 TRGV7 T cell receptor gamma variable 7 (pseudogene) pseudogene T cell receptor pseudogene Approved 7p14.1 07p14.1 V1S7P T-cell receptor, gamma, variable region V7 (pseudogene) TCRGV7 "T cell receptor gamma variable 7|T cell receptor gamma variable 7 pseudogene" T cell receptor gamma locus at 7p14 375 1989-05-30 2011-04-15 2016-10-05 6981 ENSG00000249978 OTTHUMG00000155100 M13433 NG_001336 "2938743|2969332" PGOHUM00000250858 TRGV7 +HGNC:12294 TRGV8 T cell receptor gamma variable 8 other T cell receptor gene Approved 7p14.1 07p14.1 V1S8 T-cell receptor, gamma, variable region V8 TCRGV8 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6982 ENSG00000211696 OTTHUMG00000155098 uc064cxx.1 M13434 NG_001336 TRGV8 +HGNC:12295 TRGV9 T cell receptor gamma variable 9 other T cell receptor gene Approved 7p14.1 07p14.1 V2 T-cell receptor, gamma, variable region V9 TCRGV9 T cell receptor gamma locus at 7p14 375 1989-05-30 2016-10-05 6983 ENSG00000211695 OTTHUMG00000155218 uc064cxv.1 X07205 NG_001336 "2969332|2806544" TRGV9 +HGNC:12285 TRGV10 T cell receptor gamma variable 10 (non-functional) other T cell receptor gene Approved 7p14.1 07p14.1 V3P T-cell receptor, gamma, variable region V10 TCRGV10 T cell receptor gamma variable 10 T cell receptor gamma locus at 7p14 375 1989-05-30 2008-09-12 2016-10-05 6984 ENSG00000211694 OTTHUMG00000155223 uc003tgl.4 X07206 NG_001336 2969332 TRGV10 +HGNC:12286 TRGV11 T cell receptor gamma variable 11 (non-functional) other T cell receptor gene Approved 7p14.1 07p14.1 V4P T-cell receptor, gamma, variable region V11 TCRGV11 T cell receptor gamma variable 11 T cell receptor gamma locus at 7p14 375 1989-05-30 2008-09-12 2016-10-05 6985 ENSG00000211693 OTTHUMG00000155221 uc064cxu.1 Y11227 NG_001336 TRGV11 +HGNC:12296 TRGVA T cell receptor gamma variable A (pseudogene) pseudogene T cell receptor pseudogene Approved 7p14.1 07p14.1 V5P T-cell receptor, gamma, variable region VA (pseudogene) TCRGVA "T cell receptor gamma variable A|T cell receptor gamma variable A pseudogene" T cell receptor gamma locus at 7p14 375 1989-05-30 2011-04-15 2016-10-05 6986 ENSG00000225992 OTTHUMG00000155224 X07208 NG_001336 2969332 TRGVA +HGNC:12297 TRGVB T cell receptor gamma variable B (pseudogene) pseudogene T cell receptor pseudogene Approved 7p14.1 07p14.1 V6P T-cell receptor, gamma, variable region VB (pseudogene) TCRGVB "T cell receptor gamma variable B|T cell receptor gamma variable B pseudogene" T cell receptor gamma locus at 7p14 375 1989-05-30 2011-04-15 2016-10-05 6987 ENSG00000231202 OTTHUMG00000155216 X07209 NG_001336 2969332 TRGVB +HGNC:12298 TRH thyrotropin releasing hormone protein-coding gene gene with protein product Approved 3q13.3-q21 03q13.3-q21 prothyroliberin thyrotropin-releasing hormone Endogenous ligands 542 1991-06-04 2016-01-27 2016-01-27 7200 ENSG00000170893 OTTHUMG00000159634 uc003enc.5 NM_007117 CCDS3066 P20396 "2126343|1900134" MGI:98823 RGD:3903 TRH 613879 120259 +HGNC:34535 TRH-GTG1-1 transfer RNA-His (GTG) 1-1 non-coding RNA RNA, transfer Approved 1q21.1 01q21.1 TRNAH4 transfer RNA histidine 4 (anticodon GUG) Cytoplasmic transfer RNAs 842 2008-08-21 2014-06-19 2014-06-19 2014-06-19 100188991 HG983832 +HGNC:34902 TRH-GTG1-2 transfer RNA-His (GTG) 1-2 non-coding RNA RNA, transfer Approved 1 01 TRNAH10 transfer RNA histidine 10 (anticodon GUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189334 HG983833 +HGNC:34874 TRH-GTG1-3 transfer RNA-His (GTG) 1-3 non-coding RNA RNA, transfer Approved 1 01 TRNAH9 transfer RNA histidine 9 (anticodon GUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189307 HG983834 +HGNC:34736 TRH-GTG1-4 transfer RNA-His (GTG) 1-4 non-coding RNA RNA, transfer Approved 1 01 TRNAH7 transfer RNA histidine 7 (anticodon GUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189174 HG983835 +HGNC:34538 TRH-GTG1-5 transfer RNA-His (GTG) 1-5 non-coding RNA RNA, transfer Approved 6 06 "TRNAH3|TRH-GTG1-8" "transfer RNA histidine 3 (anticodon GUG)|transfer RNA-His (GTG) 1-8" Cytoplasmic transfer RNAs 842 2008-09-03 2016-02-15 2016-02-15 2016-02-15 100188987 HG983839 +HGNC:33260 TRH-GTG1-6 transfer RNA-His (GTG) 1-6 non-coding RNA RNA, transfer Approved 9 09 "TRNAH5|TRH-GTG1-9" "transfer RNA histidine 5 (anticodon GUG)|transfer RNA-His (GTG) 1-9" Cytoplasmic transfer RNAs 842 2007-02-01 2016-02-15 2016-02-15 2016-02-15 100009607 HG983840 6188108 +HGNC:34536 TRH-GTG1-7 transfer RNA-His (GTG) 1-7 non-coding RNA RNA, transfer Approved 15 15 "TRNAH1|TRH-GTG1-5" "transfer RNA histidine 1 (anticodon GUG)|transfer RNA-His (GTG) 1-5" Cytoplasmic transfer RNAs 842 2008-09-03 2016-02-15 2016-02-15 2016-02-15 100188986 HG983836 +HGNC:34537 TRH-GTG1-8 transfer RNA-His (GTG) 1-8 non-coding RNA RNA, transfer Approved 15 15 "TRNAH2|TRH-GTG1-6" "transfer RNA histidine 2 (anticodon GUG)|transfer RNA-His (GTG) 1-6" Cytoplasmic transfer RNAs 842 2008-09-03 2016-02-15 2016-02-15 2016-02-15 100188988 HG983837 +HGNC:34624 TRH-GTG1-9 transfer RNA-His (GTG) 1-9 non-coding RNA RNA, transfer Approved 15 15 "TRNAH6|TRH-GTG1-7" "transfer RNA histidine 6 (anticodon GUG)|transfer RNA-His (GTG) 1-7" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189065 HG983838 +HGNC:34918 TRH-GTG2-1 transfer RNA-His (GTG) 2-1 non-coding RNA RNA, transfer Approved 1 01 TRNAH11 transfer RNA histidine 11 (anticodon GUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189350 HG983841 +HGNC:34805 TRH-GTG3-1 transfer RNA-His (GTG) 3-1 non-coding RNA RNA, transfer Approved 3 03 TRNAH8 transfer RNA histidine 8 (anticodon GUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189242 HG983842 +HGNC:30748 TRHDE thyrotropin releasing hormone degrading enzyme protein-coding gene gene with protein product Approved 12q21.1 12q21.1 "PGPEP2|TRH-DE|PAP-II" "pyroglutamyl-peptidase II|pyroglutamyl aminopeptidase II|TRH-specific aminopeptidase" thyrotropin-releasing hormone degrading enzyme 2005-05-10 2005-08-09 2016-02-01 2016-02-01 29953 ENSG00000072657 OTTHUMG00000169642 uc001sxa.4 AF126372 NM_013381 CCDS9004 Q9UKU6 "10491199|12975309" MGI:2384311 RGD:728895 TRHDE 606950 M01.008 objectId:1577 3.4.19.6 +HGNC:27471 TRHDE-AS1 TRHDE antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q21.1 12q21.1 TRHDE antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-18 283392 ENSG00000236333 OTTHUMG00000150370 uc021rat.2 BC040230 NR_026836 +HGNC:12299 TRHR thyrotropin releasing hormone receptor protein-coding gene gene with protein product Approved 8q23.1 08q23.1 thyrotropin-releasing hormone receptor Peptide receptors 220 1993-11-08 2016-02-01 2016-02-01 7201 ENSG00000174417 OTTHUMG00000164910 uc064pnj.1 XM_011517263 CCDS6311 P34981 8128317 MGI:98824 RGD:3904 TRHR 188545 120261 objectId:363 +HGNC:34812 TRI-AAT1-1 transfer RNA-Ile (AAT) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAI12 transfer RNA isoleucine 12 (anticodon AAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189249 HG983843 +HGNC:34630 TRI-AAT2-1 transfer RNA-Ile (AAT) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAI4 transfer RNA isoleucine 4 (anticodon AAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189071 HG983844 +HGNC:34776 TRI-AAT3-1 transfer RNA-Ile (AAT) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAI11 transfer RNA isoleucine 11 (anticodon AAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189213 HG983845 +HGNC:34961 TRI-AAT4-1 transfer RNA-Ile (AAT) 4-1 non-coding RNA RNA, transfer Approved 17 17 TRNAI24 transfer RNA isoleucine 24 (anticodon AAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189393 HG983846 +HGNC:34715 TRI-AAT5-1 transfer RNA-Ile (AAT) 5-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAI9|TRI-AAT5-3" "transfer RNA isoleucine 9 (anticodon AAU)|transfer RNA-Ile (AAT) 5-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189153 HG983849 +HGNC:34904 TRI-AAT5-2 transfer RNA-Ile (AAT) 5-2 non-coding RNA RNA, transfer Approved 6 06 "TRNAI20|TRI-AAT5-4" "transfer RNA isoleucine 20 (anticodon AAU)|transfer RNA-Ile (AAT) 5-4" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189336 HG983850 +HGNC:34877 TRI-AAT5-3 transfer RNA-Ile (AAT) 5-3 non-coding RNA RNA, transfer Approved 6 06 "TRNAI17|TRI-AAT5-5" "transfer RNA isoleucine 17 (anticodon AAU)|transfer RNA-Ile (AAT) 5-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189310 HG983851 +HGNC:34839 TRI-AAT5-4 transfer RNA-Ile (AAT) 5-4 non-coding RNA RNA, transfer Approved 14 14 "TRNAI15|TRI-AAT5-1" "transfer RNA isoleucine 15 (anticodon AAU)|transfer RNA-Ile (AAT) 5-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189275 HG983847 +HGNC:34955 TRI-AAT5-5 transfer RNA-Ile (AAT) 5-5 non-coding RNA RNA, transfer Approved 17 17 "TRNAI23|TRI-AAT5-2" "transfer RNA isoleucine 23 (anticodon AAU)|transfer RNA-Ile (AAT) 5-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189387 HG983848 +HGNC:34940 TRI-AAT6-1 transfer RNA-Ile (AAT) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAI22 transfer RNA isoleucine 22 (anticodon AAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189372 HG983852 +HGNC:34710 TRI-AAT7-1 transfer RNA-Ile (AAT) 7-1 non-coding RNA RNA, transfer Approved 6 06 TRNAI8 transfer RNA isoleucine 8 (anticodon AAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189148 HG983853 +HGNC:34970 TRI-AAT7-2 transfer RNA-Ile (AAT) 7-2 non-coding RNA RNA, transfer Approved 6 06 TRNAI25 transfer RNA isoleucine 25 (anticodon AAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189401 HG983854 +HGNC:34656 TRI-AAT8-1 transfer RNA-Ile (AAT) 8-1 non-coding RNA RNA, transfer Approved 6 06 TRNAI5 transfer RNA isoleucine 5 (anticodon AAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189095 HG983855 +HGNC:12300 TRI-AAT9-1 transfer RNA-Ile (AAT) 9-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 "TRI|TRNAI1" "transfer RNA isoleucine|transfer RNA isoleucine 1 (anticodon AAU)" Cytoplasmic transfer RNAs 842 1994-02-18 2014-06-19 2014-06-19 2014-06-19 7202 HG983856 +HGNC:35034 TRI-AAT10-1 transfer RNA-Ile (AAT) 10-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNAI28P transfer RNA isoleucine 28 (anticodon AAU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189462 HG983857 NG_008519 +HGNC:35047 TRI-AAT11-1 transfer RNA-Ile (AAT) 11-1 non-coding RNA RNA, transfer Approved 12q24.33 12q24.33 TRNAI29P transfer RNA isoleucine 29 (anticodon AAU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189474 HG983858 NG_008532 +HGNC:35054 TRI-AAT12-1 transfer RNA-Ile (AAT) 12-1 non-coding RNA RNA, transfer Approved 20q13.2 20q13.2 TRNAI30P transfer RNA isoleucine 30 (anticodon AAU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189481 HG983859 NG_008539 +HGNC:34694 TRI-GAT1-1 transfer RNA-Ile (GAT) 1-1 non-coding RNA RNA, transfer Approved X X TRNAI7 transfer RNA isoleucine 7 (anticodon GAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189132 HG983860 +HGNC:34609 TRI-GAT1-2 transfer RNA-Ile (GAT) 1-2 non-coding RNA RNA, transfer Approved X X TRNAI3 transfer RNA isoleucine 3 (anticodon GAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189050 HG983861 +HGNC:34996 TRI-GAT1-3 transfer RNA-Ile (GAT) 1-3 non-coding RNA RNA, transfer Approved X X TRNAI26 transfer RNA isoleucine 26 (anticodon GAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189427 HG983862 +HGNC:34891 TRI-TAT1-1 transfer RNA-Ile (TAT) 1-1 non-coding RNA RNA, transfer Approved 19 19 TRNAI18 transfer RNA isoleucine 18 (anticodon UAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189324 HG983863 +HGNC:34828 TRI-TAT2-1 transfer RNA-Ile (TAT) 2-1 non-coding RNA RNA, transfer Approved 2 02 TRNAI13 transfer RNA isoleucine 13 (anticodon UAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189265 HG983864 +HGNC:34587 TRI-TAT2-2 transfer RNA-Ile (TAT) 2-2 non-coding RNA RNA, transfer Approved 6 06 TRNAI2 transfer RNA isoleucine 2 (anticodon UAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189028 ENSG00000238621 HG983865 +HGNC:34693 TRI-TAT2-3 transfer RNA-Ile (TAT) 2-3 non-coding RNA RNA, transfer Approved 6 06 TRNAI6 transfer RNA isoleucine 6 (anticodon UAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189131 ENSG00000238648 HG983866 +HGNC:34916 TRI-TAT3-1 transfer RNA-Ile (TAT) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAI21 transfer RNA isoleucine 21 (anticodon UAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189348 HG983867 +HGNC:26937 TRIAP1 TP53 regulated inhibitor of apoptosis 1 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "P53CSV|WF-1|HSPC132|p53CSV|MDM35" "p53-inducible cell-survival factor|mitochondrial distribution and morphology 35 homolog (S. cerevisiae)" 2006-02-24 2014-11-18 51499 ENSG00000170855 OTTHUMG00000047787 uc001tyg.3 NM_016399 CCDS9198 O43715 "11042152|15735003" MGI:1916326 RGD:1586233 TRIAP1 614943 +HGNC:31659 TRIAP1P1 TP53 regulated inhibitor of apoptosis 1 pseudogene 1 pseudogene pseudogene Approved 10p12.1 10p12.1 bA748L13.4 C10orf135 chromosome 10 open reading frame 135 2004-05-27 2012-04-17 2012-04-17 2012-04-17 100289619 ENSG00000237956 OTTHUMG00000017859 NG_027980 PGOHUM00000238381 +HGNC:16891 TRIB1 tribbles pseudokinase 1 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "C8FW|GIG2|TRB1" tribbles homolog 1 (Drosophila) 2004-05-10 2013-10-03 2015-08-26 10221 ENSG00000173334 OTTHUMG00000165007 uc003yrx.4 AF205437 NM_025195 "CCDS6357|CCDS64971" Q96RU8 "9342215|16715410" MGI:2443397 RGD:621596 TRIB1 609461 objectId:2249 +HGNC:30809 TRIB2 tribbles pseudokinase 2 protein-coding gene gene with protein product Approved 2p24.3 02p24.3 "TRB2|GS3955" tribbles homolog 2 (Drosophila) 2004-04-30 2013-10-03 2016-10-05 28951 ENSG00000071575 OTTHUMG00000090575 uc002rbv.5 AY245544 NM_021643 CCDS1683 Q92519 "12736262|17097562|16715410" MGI:2145021 RGD:1564451 TRIB2 609462 objectId:2250 +HGNC:16228 TRIB3 tribbles pseudokinase 3 protein-coding gene gene with protein product Approved 20p13 20p13 "dJ1103G7.3|TRB3" C20orf97 "chromosome 20 open reading frame 97|tribbles homolog 3 (Drosophila)" 2001-07-17 2004-05-04 2013-10-03 2016-10-05 57761 ENSG00000101255 OTTHUMG00000031627 uc002wdm.4 AF250311 NM_021158 "CCDS12997|CCDS77554" Q96RU7 "12791994|16715410" MGI:1345675 RGD:708432 TRIB3 607898 objectId:2251 +HGNC:12302 TRICY1 trichilemmal cyst 1 phenotype phenotype only Approved 3p24.1-p22.1 03p24.1-p22.1 pilar cyst 2000-07-31 2011-02-10 94014 15637721 609649 +HGNC:22200 TRIL TLR4 interactor with leucine rich repeats protein-coding gene gene with protein product Approved 7p14.3 07p14.3 KIAA0644 2010-09-17 2016-06-06 2016-06-06 9865 ENSG00000255690 OTTHUMG00000152829 uc032zip.2 NM_014817 CCDS75573 Q7L0X0 19710467 MGI:1914123 RGD:1310827 613356 +HGNC:15974 TRIM2 tripartite motif containing 2 protein-coding gene gene with protein product Approved 4q31.3 04q31.3 "KIAA0517|RNF86|CMT2R" tripartite motif-containing 2 "Ring finger proteins|Tripartite motif containing" "58|59" 2001-07-18 2011-01-25 2015-06-25 23321 ENSG00000109654 OTTHUMG00000155991 uc003ing.3 AF220018 XM_017007943 "CCDS3781|CCDS47147" Q9C040 "9628581|11331580" MGI:1933163 RGD:1310981 TRIM2 614141 401930 +HGNC:10064 TRIM3 tripartite motif containing 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "HAC1|BERP|RNF97" "ring finger protein 22|brain expressed ring finger|tripartite motif protein TRIM3" RNF22 tripartite motif-containing 3 "Ring finger proteins|Tripartite motif containing" "58|59" 2000-07-31 2001-11-23 2011-01-25 2016-10-05 10612 ENSG00000110171 OTTHUMG00000133405 uc009yfd.4 AF045239 NM_006458 "CCDS7764|CCDS58115" O75382 10391919 MGI:1860040 RGD:70074 TRIM3 605493 +HGNC:16275 TRIM4 tripartite motif containing 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 RNF87 "tripartite motif protein TRIM4|tripartite motif protein 4" tripartite motif-containing 4 "Ring finger proteins|Tripartite motif containing" "58|59" 2001-07-19 2011-01-25 2016-10-05 89122 ENSG00000146833 OTTHUMG00000156648 uc003usd.4 AF220023 NM_033017 "CCDS5678|CCDS5679" Q9C037 11331580 TRIM4 +HGNC:16276 TRIM5 tripartite motif containing 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "RNF88|TRIM5alpha" "tripartite motif protein TRIM5|tripartite motif protein TRIM" tripartite motif-containing 5 "Ring finger proteins|Tripartite motif containing" "58|59" 2001-07-20 2011-01-25 2016-10-05 85363 ENSG00000132256 OTTHUMG00000066893 uc001mbm.3 AF220025 NM_033034 "CCDS31392|CCDS31393|CCDS31394" Q9C035 11331580 MGI:3646853 RGD:1304579 TRIM5 608487 +HGNC:16277 TRIM6 tripartite motif containing 6 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 RNF89 tripartite motif-containing 6 "Ring finger proteins|Tripartite motif containing" "58|59" 2001-11-21 2011-01-25 2016-10-05 117854 ENSG00000121236 OTTHUMG00000150029 uc001mbc.3 AF220030 NM_001003818 "CCDS31389|CCDS31390|CCDS55738" Q9C030 11331580 MGI:2137352 RGD:1310896 TRIM6 607564 +HGNC:33440 TRIM6-TRIM34 TRIM6-TRIM34 readthrough other readthrough Approved 11p15.4 11p15.4 Ring finger proteins 58 2007-07-31 2011-01-25 2014-11-19 445372 ENSG00000258588 OTTHUMG00000066899 uc001mbf.4 AB039903 NM_001003819 CCDS31388 "MGI:2137359|MGI:4821264" TRIM6-TRIM34 +HGNC:16278 TRIM7 tripartite motif containing 7 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "RNF90|GNIP" "glycogenin-interacting protein|tripartite motif protein TRIM7" tripartite motif-containing 7 "Ring finger proteins|Tripartite motif containing" "58|59" 2001-07-31 2011-01-25 2014-11-19 81786 ENSG00000146054 OTTHUMG00000130963 uc003mmz.3 AF220032 NM_203296 "CCDS4462|CCDS4463|CCDS4464|CCDS43414" Q9C029 11331580 MGI:2137353 RGD:1307328 TRIM7 609315 +HGNC:15579 TRIM8 tripartite motif containing 8 protein-coding gene gene with protein product Approved 10q24.32 10q24.32 GERP glioblastoma expressed ring finger protein RNF27 "ring finger protein 27|tripartite motif-containing 8" "Ring finger proteins|Tripartite motif containing" "58|59" 2001-04-26 2002-06-14 2011-01-25 2016-10-05 81603 ENSG00000171206 OTTHUMG00000018964 uc001kvz.3 AF281046 NM_030912 CCDS31274 Q9BZR9 "11118312|12163497" MGI:1933302 RGD:1585223 TRIM8 606125 +HGNC:16288 TRIM9 tripartite motif containing 9 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 "SPRING|RNF91" tripartite motif-containing 9 "Ring finger proteins|Tripartite motif containing|Fibronectin type III domain containing" "58|59|555" 2001-08-24 2011-01-25 2016-10-05 114088 ENSG00000100505 OTTHUMG00000140291 uc001wyx.5 AF220036 NM_015163 "CCDS9703|CCDS45105" Q9C026 "11331580|11524423" MGI:2137354 RGD:621540 TRIM9 606555 +HGNC:10072 TRIM10 tripartite motif containing 10 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "RFB30|HERF1" RNF9 tripartite motif-containing 10 "Ring finger proteins|Tripartite motif containing" "58|59" 1999-06-18 2001-11-23 2011-01-25 2016-10-05 10107 ENSG00000204613 OTTHUMG00000031295 uc011ihw.3 Y07829 XM_011514222 "CCDS4676|CCDS34375" Q9UDY6 "9271628|10207104" MGI:1338757 RGD:1359438 TRIM10 605701 +HGNC:16281 TRIM11 tripartite motif containing 11 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "RNF92|BIA1" tripartite motif-containing 11 "Ring finger proteins|Tripartite motif containing" "58|59" 2001-08-07 2011-01-25 2014-11-19 81559 ENSG00000154370 OTTHUMG00000039773 uc001hss.4 AF220125 NM_145214 CCDS31048 Q96F44 11331580 MGI:2137355 RGD:1305448 TRIM11 607868 +HGNC:9976 TRIM13 tripartite motif containing 13 protein-coding gene gene with protein product Approved 13q14.2 13q14.2 "Leu5|RNF77|DLEU5" RFP2 "ret finger protein 2|tripartite motif-containing 13" "Ring finger proteins|Tripartite motif containing" "58|59" 1999-12-01 2006-09-26 2011-01-25 2016-10-05 10206 ENSG00000204977 OTTHUMG00000016926 uc001vds.2 AF220127 NM_001007278 "CCDS9423|CCDS41888" O60858 9599022 MGI:1913847 RGD:1307609 TRIM13 605661 +HGNC:16283 TRIM14 tripartite motif containing 14 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 KIAA0129 tripartite motif-containing 14 Tripartite motif containing 59 2001-07-31 2011-01-25 2016-10-05 9830 ENSG00000106785 OTTHUMG00000020339 uc064urn.1 AF220130 NM_014788 CCDS6734 Q14142 11331580 MGI:1921985 RGD:1311514 TRIM14 606556 +HGNC:16284 TRIM15 tripartite motif containing 15 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "ZNFB7|RNF93" ZNF178 "zinc finger protein 178|tripartite motif-containing 15" "Ring finger proteins|Tripartite motif containing" "58|59" 2001-07-31 2011-01-25 2016-10-05 89870 ENSG00000204610 OTTHUMG00000031031 uc063ylb.1 "AF220132|U34249" NM_033229 CCDS4677 Q9C019 "11331580|8304341|8812418" MGI:1916347 RGD:6496746 TRIM15 +HGNC:17241 TRIM16 tripartite motif containing 16 protein-coding gene gene with protein product Approved 17p12 17p12 EBBP estrogen-responsive B box protein tripartite motif-containing 16 Tripartite motif containing 59 2001-11-22 2011-01-25 2016-10-05 10626 ENSG00000221926 OTTHUMG00000059067 uc002gox.4 AF096870 NM_006470 CCDS11171 O95361 11331580 MGI:2137356 RGD:1309749 TRIM16 609505 +HGNC:32670 TRIM16L tripartite motif containing 16-like protein-coding gene gene with protein product Approved 17p11.2 17p11.2 TRIM70 tripartite motif-containing 16-like 2006-03-29 2011-01-25 2015-09-08 147166 ENSG00000108448 OTTHUMG00000059050 uc010cqg.2 DQ232882 NM_001037330 CCDS32588 Q309B1 TRIM16L +HGNC:13430 TRIM17 tripartite motif containing 17 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "terf|RBCC" "ring finger protein 16|RING finger protein terf|testis RING finger protein" RNF16 tripartite motif-containing 17 "Ring finger proteins|Tripartite motif containing" "58|59" 2000-03-15 2001-11-30 2011-01-25 2016-10-05 51127 ENSG00000162931 OTTHUMG00000039974 uc001hsv.4 AF156271 NM_016102 "CCDS1571|CCDS44327" Q9Y577 "9792805|10894938" MGI:1861440 RGD:69290 TRIM17 606123 +HGNC:11312 TRIM21 tripartite motif containing 21 protein-coding gene gene with protein product Approved 11p15.5-p15.3 11p15.5-p15.3 "RNF81|RO52|Ro/SSA" SSA1 "Sjogren syndrome antigen A1 (52kDa, ribonucleoprotein autoantigen SS-A/Ro)|tripartite motif-containing 21" "Ring finger proteins|Tripartite motif containing" "58|59" 1994-01-06 2004-11-26 2011-01-25 2014-11-19 6737 ENSG00000132109 OTTHUMG00000165701 uc001lyy.2 AF391283 NM_003141 CCDS44525 P19474 8094596 MGI:106657 RGD:1305795 TRIM21 109092 +HGNC:16379 TRIM22 tripartite motif containing 22 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "STAF50|GPSTAF50|RNF94" tripartite motif-containing 22 "Ring finger proteins|Tripartite motif containing|Minor histocompatibility antigens" "58|59|870" 2001-08-10 2011-01-25 2016-10-05 10346 ENSG00000132274 OTTHUMG00000066904 uc001mbr.4 X82200 NM_006074 CCDS41612 Q8IYM9 "11331580|11096452" TRIM22 606559 +HGNC:660 TRIM23 tripartite motif containing 23 protein-coding gene gene with protein product Approved 5q12.3 05q12.3 "ARD1|RNF46" ARFD1 "ADP-ribosylation factor domain protein 1, 64kDa|tripartite motif-containing 23" "Ring finger proteins|Tripartite motif containing|ARF GTPase family" "58|59|357" 1994-06-23 2004-06-04 2011-01-25 2015-08-26 373 ENSG00000113595 OTTHUMG00000097802 uc003jty.4 L04510 NM_001656 "CCDS3986|CCDS3987|CCDS43322" P36406 8473324 MGI:1933161 RGD:621587 TRIM23 601747 +HGNC:11812 TRIM24 tripartite motif containing 24 protein-coding gene gene with protein product Approved 7q33-q34 07q33-q34 "hTIF1|Tif1a|RNF82|TIF1A" TIF1 "transcriptional intermediary factor 1|tripartite motif-containing 24" "Ring finger proteins|Tripartite motif containing|PHD finger proteins" "58|59|88" 1998-12-18 2005-06-02 2011-01-25 2016-10-11 8805 ENSG00000122779 OTTHUMG00000155820 uc003vuc.4 AF009353 NM_015905 "CCDS5847|CCDS47720" O15164 "9115274|9191165" MGI:109275 RGD:1560596 TRIM24 603406 120263 objectId:2252 +HGNC:12932 TRIM25 tripartite motif containing 25 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "EFP|RNF147" ZNF147 "zinc finger protein 147 (estrogen-responsive finger protein)|tripartite motif-containing 25" "Ring finger proteins|Tripartite motif containing" "58|59" 1994-03-16 2004-03-30 2011-01-25 2015-09-01 7706 ENSG00000121060 OTTHUMG00000178124 uc002iut.4 D21205 NM_005082 CCDS11591 Q14258 7789997 MGI:102749 RGD:1594396 TRIM25 600453 +HGNC:12962 TRIM26 tripartite motif containing 26 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 RNF95 ZNF173 tripartite motif-containing 26 "Ring finger proteins|Tripartite motif containing" "58|59" 1995-07-11 2001-11-23 2011-01-25 2016-10-05 7726 ENSG00000234127 OTTHUMG00000031041 uc011iib.3 AB088090 NM_003449 CCDS4678 Q12899 8530076 MGI:1337056 RGD:1359126 TRIM26 600830 +HGNC:31338 TRIM26BP tripartite motif containing 26B, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 "Em:AB023053.1|TRIM26P1" tripartite motif containing 26 pseudogene 1 TRIM26P tripartite motif-containing 26 pseudogene Tripartite motif containing 59 2004-03-02 2012-05-21 2012-05-21 2016-10-05 404024 ENSG00000236475 OTTHUMG00000031283 NG_023052 PGOHUM00000243569 +HGNC:9975 TRIM27 tripartite motif containing 27 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 RNF76 RFP "ret finger protein|tripartite motif-containing 27" "Ring finger proteins|Tripartite motif containing" "58|59" 1995-05-09 2006-09-26 2011-01-25 2016-10-05 5987 ENSG00000204713 OTTHUMG00000031215 uc003nlr.4 Z58939 NM_030950 CCDS4654 P14373 8114113 MGI:97904 RGD:1310105 TRIM27 602165 120269 +HGNC:16384 TRIM28 tripartite motif containing 28 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "TIF1B|KAP1|TF1B|RNF96|PPP1R157" protein phosphatase 1, regulatory subunit 157 tripartite motif-containing 28 "Ring finger proteins|Tripartite motif containing|PHD finger proteins|Protein phosphatase 1 regulatory subunits" "58|59|88|694" 2001-08-10 2011-01-25 2014-11-19 10155 ENSG00000130726 OTTHUMG00000183546 uc002qtg.2 NM_005762 CCDS12985 Q13263 "11331580|11226167" MGI:109274 RGD:620289 TRIM28 601742 objectId:2253 +HGNC:17274 TRIM29 tripartite motif containing 29 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "ATDC|FLJ36085" "tripartite motif protein TRIM29|ataxia-telangiectasia group D-associated protein" tripartite motif-containing 29 Tripartite motif containing 59 2001-11-28 2011-01-25 2014-11-18 23650 ENSG00000137699 OTTHUMG00000140377 uc001pwz.4 AF230388 NM_012101 "CCDS8428|CCDS81637" Q14134 11331580 MGI:1919419 RGD:1307858 TRIM29 610658 +HGNC:16289 TRIM31 tripartite motif containing 31 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "RNF|HCGI|C6orf13|HCG1" tripartite motif-containing 31 "Ring finger proteins|Tripartite motif containing" "58|59" 2001-08-16 2011-01-25 2016-10-05 11074 ENSG00000204616 OTTHUMG00000031064 uc011ihp.3 AF230386 XM_011514264 CCDS34374 Q9BZY9 11331580 MGI:2385051 RGD:1308607 TRIM31 609316 +HGNC:39761 TRIM31-AS1 TRIM31 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 TRIM31 antisense RNA 1 (non-protein coding) 2011-09-08 2012-08-15 2012-10-12 104533120 ENSG00000231226 OTTHUMG00000130787 uc063xfr.1 NR_126470 +HGNC:16380 TRIM32 tripartite motif containing 32 protein-coding gene gene with protein product Approved 9q33.1 09q33.1 "HT2A|TATIP|BBS11" LGMD2H "limb girdle muscular dystrophy 2H (autosomal recessive)|tripartite motif-containing 32" "Ring finger proteins|Tripartite motif containing|Bardet-Biedl syndrome associated" "58|59|980" 2001-08-10 2011-01-25 2016-10-12 22954 ENSG00000119401 OTTHUMG00000021026 uc004bjw.3 U18543 NM_012210 CCDS6817 Q13049 "11331580|7778269|16606853" MGI:1917057 RGD:1305238 "Leiden Muscular Dystrophy Pages|http://www.LOVD.nl/TRIM32|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=TRIM32|LRG_211|http://www.lrg-sequence.org/LRG/LRG_211" TRIM32 602290 120273 +HGNC:16290 TRIM33 tripartite motif containing 33 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "TIF1GAMMA|FLJ11429|KIAA1113|TIFGAMMA|RFG7|TF1G|TIF1G|PTC7" "transcriptional intermediary factor 1 gamma|ret-fused gene 7" tripartite motif-containing 33 "Ring finger proteins|Tripartite motif containing|PHD finger proteins" "58|59|88" 2001-08-10 2011-01-25 2016-10-05 51592 ENSG00000197323 OTTHUMG00000011891 uc001eew.3 AF220136 NM_015906 "CCDS872|CCDS873" Q9UPN9 "11331580|10022127" MGI:2137357 RGD:1307339 TRIM33 605769 120279 objectId:2254 +HGNC:10063 TRIM34 tripartite motif containing 34 protein-coding gene gene with protein product Approved 11p15 11p15 RNF21 tripartite motif-containing 34 "Ring finger proteins|Tripartite motif containing" "58|59" 2000-05-23 2001-11-23 2011-01-25 2015-09-08 53840 ENSG00000258659 OTTHUMG00000066892 uc001mbh.4 AB039902 NM_001003827 CCDS31391 Q9BYJ4 "MGI:2137359|MGI:4821264" RGD:7240857 TRIM34 605684 +HGNC:16285 TRIM35 tripartite motif containing 35 protein-coding gene gene with protein product Approved 8p21.2 08p21.2 "KIAA1098|MAIR|HLS5" tripartite motif-containing 35 "Ring finger proteins|Tripartite motif containing" "58|59" 2001-11-21 2011-01-25 2014-11-19 23087 ENSG00000104228 OTTHUMG00000102047 uc003xfl.2 AB029021 NM_171982 "CCDS6056|CCDS78322" Q9UPQ4 "11331580|14662771|12692137" MGI:1914104 RGD:1564642 TRIM35 617007 +HGNC:16280 TRIM36 tripartite motif containing 36 protein-coding gene gene with protein product Approved 5q22.3 05q22.3 "RBCC728|RNF98|HAPRIN" "zinc-binding protein Rbcc728|tripartite motif protein 36|RING finger protein 98" tripartite motif-containing 36 "Ring finger proteins|Tripartite motif containing|Fibronectin type III domain containing" "58|59|555" 2001-11-21 2011-01-25 2016-10-05 55521 ENSG00000152503 OTTHUMG00000128892 uc003kqs.4 AJ272269 NM_018700 "CCDS4115|CCDS34211|CCDS34212|CCDS75287|CCDS78047" Q9NQ86 11331580 MGI:106264 RGD:1308714 TRIM36 609317 +HGNC:41422 TRIM36-IT1 TRIM36 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 5q22.3 05q22.3 TRIM36 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874338 ENSG00000250472 OTTHUMG00000163154 uc063gct.1 +HGNC:7523 TRIM37 tripartite motif containing 37 protein-coding gene gene with protein product Approved 17q22 17q22 "KIAA0898|POB1|TEF3" RING-B-box-coiled-coil protein MUL tripartite motif-containing 37 "Ring finger proteins|Tripartite motif containing" "58|59" 1995-09-08 2001-11-30 2011-01-25 2016-01-15 4591 ENSG00000108395 OTTHUMG00000179360 uc002iwy.5 AB020705 NM_015294 "CCDS32694|CCDS45746|CCDS82174" O94972 "9106536|10888877" MGI:2153072 RGD:1308349 TRIM37 605073 120289 +HGNC:10059 TRIM38 tripartite motif containing 38 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 RORET RNF15 "ring finger protein 15|tripartite motif-containing 38" "Ring finger proteins|Tripartite motif containing" "58|59" 2000-03-06 2002-06-07 2011-01-25 2016-10-05 10475 ENSG00000112343 OTTHUMG00000014414 uc003nfm.5 U90547 XM_005248799 CCDS4568 O00635 MGI:2684869 RGD:1596868 TRIM38 +HGNC:10065 TRIM39 tripartite motif containing 39 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 RNF23 "ring finger protein 23|tripartite motif-containing 39" "Ring finger proteins|Tripartite motif containing" "58|59" 2000-07-31 2002-06-07 2011-01-25 2015-09-01 56658 ENSG00000204599 OTTHUMG00000031066 uc010jrz.4 BC034985 NM_172016 "CCDS34377|CCDS34378" Q9HCM9 11006080 MGI:1890659 RGD:1303115 TRIM39 605700 +HGNC:38845 TRIM39-RPP21 TRIM39-RPP21 readthrough other readthrough Approved 6p22.1 06p22.1 2011-02-21 2014-11-19 202658 ENSG00000248167 OTTHUMG00000161144 uc063mrm.1 NM_001199119.1 CCDS78121 +HGNC:18736 TRIM40 tripartite motif containing 40 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 RNF35 tripartite motif-containing 40 "Ring finger proteins|Tripartite motif containing" "58|59" 2002-06-11 2011-01-25 2016-10-05 135644 ENSG00000204614 OTTHUMG00000031083 uc011ihs.1 AF489517 NM_138700 "CCDS4675|CCDS69069" Q6P9F5 MGI:2684881 RGD:1359645 TRIM40 616976 +HGNC:19013 TRIM41 tripartite motif containing 41 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "MGC1127|RINCK" RING-finger protein that interacts with C kinase tripartite motif-containing 41 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2014-11-19 90933 ENSG00000146063 OTTHUMG00000130965 uc003mne.3 AF258579 NM_201627 "CCDS4465|CCDS4466" Q8WV44 16022281 MGI:2384814 RGD:1308885 TRIM41 610530 +HGNC:19014 TRIM42 tripartite motif containing 42 protein-coding gene gene with protein product Approved 3q23 03q23 "FLJ40097|PPP1R40|T4A1" protein phosphatase 1, regulatory subunit 40 tripartite motif-containing 42 "Ring finger proteins|Tripartite motif containing|Fibronectin type III domain containing|Protein phosphatase 1 regulatory subunits|Minor histocompatibility antigens" "58|59|555|694|870" 2003-01-03 2011-01-25 2015-08-26 287015 ENSG00000155890 OTTHUMG00000160170 uc003eto.3 AF521868 NM_152616 CCDS3113 Q8IWZ5 MGI:1926161 RGD:1359699 TRIM42 +HGNC:19015 TRIM43 tripartite motif containing 43 protein-coding gene gene with protein product Approved 2q11.1 02q11.1 TRIM43A tripartite motif-containing 43 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2016-10-05 129868 ENSG00000144015 OTTHUMG00000130401 uc002suv.4 BK000505 NM_138800 CCDS2015 Q96BQ3 RGD:1561074 TRIM43 +HGNC:37146 TRIM43B tripartite motif containing 43B protein-coding gene gene with protein product Approved 2q11.1 02q11.1 tripartite motif-containing 43B "Ring finger proteins|Tripartite motif containing" "58|59" 2009-07-24 2011-01-25 2016-09-27 653192 ENSG00000144010 OTTHUMG00000155170 NM_001164464 A6NCK2 +HGNC:43981 TRIM43CP tripartite motif containing 43C, pseudogene pseudogene pseudogene Approved 2q11.2 02q11.2 Tripartite motif containing 59 2012-05-21 2012-11-02 643445 ENSG00000144188 OTTHUMG00000155327 NG_028773 PGOHUM00000240216 +HGNC:19016 TRIM44 tripartite motif containing 44 protein-coding gene gene with protein product Approved 11p13 11p13 "DIPB|MC7" tripartite motif-containing 44 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2014-11-18 54765 ENSG00000166326 OTTHUMG00000166312 uc001mwi.3 BC024031 NM_017583 CCDS31461 Q96DX7 MGI:1931835 RGD:1304877 TRIM44 612298 445573 +HGNC:19018 TRIM45 tripartite motif containing 45 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 "FLJ13181|RNF99" tripartite motif-containing 45 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2014-11-19 80263 ENSG00000134253 OTTHUMG00000012119 uc001egz.3 NM_025188 "CCDS893|CCDS44200" Q9H8W5 15351693 MGI:1918187 RGD:1309168 TRIM45 609318 +HGNC:19019 TRIM46 tripartite motif containing 46 protein-coding gene gene with protein product Approved 1q22 01q22 "FLJ23229|TRIFIC" tripartite motif-containing 46 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2014-11-19 80128 ENSG00000163462 OTTHUMG00000035680 uc001fhs.3 NM_025058 "CCDS1097|CCDS58033|CCDS60285|CCDS72932|CCDS72931" Q7Z4K8 MGI:2673000 RGD:1305993 TRIM46 600986 +HGNC:19020 TRIM47 tripartite motif containing 47 protein-coding gene gene with protein product Approved 17q25 17q25 "GOA|RNF100" tripartite motif-containing 47 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2013-01-09 91107 ENSG00000132481 OTTHUMG00000179916 uc002jpw.4 AY026763 XM_005257787 CCDS32737 Q96LD4 MGI:1917374 RGD:1597317 TRIM47 611041 +HGNC:19021 TRIM48 tripartite motif containing 48 protein-coding gene gene with protein product Approved 11q11 11q11 RNF101 tripartite motif-containing 48 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2016-10-05 79097 ENSG00000150244 OTTHUMG00000157011 uc010rid.2 AF521869 NM_024114 CCDS7947 Q8IWZ4 TRIM48 +HGNC:13431 TRIM49 tripartite motif containing 49 protein-coding gene gene with protein product Approved 11p11.12-q12 11p11.12-q12 TRIM49A RNF18 "ring finger protein 18|tripartite motif-containing 49" "Ring finger proteins|Tripartite motif containing" "58|59" 2000-12-21 2004-11-17 2011-01-25 2015-09-08 57093 ENSG00000168930 OTTHUMG00000167634 uc001pdb.3 AB037682 NM_020358 CCDS8287 P0CI25 11018261 TRIM49 606124 +HGNC:42955 TRIM49B tripartite motif containing 49B protein-coding gene gene with protein product Approved 11p11.12 11p11.12 "Ring finger proteins|Tripartite motif containing" "58|59" 2012-05-18 2015-09-08 283116 ENSG00000182053 OTTHUMG00000186986 uc021qix.2 XM_017017561 CCDS55762 A6NDI0 TRIM49B +HGNC:38877 TRIM49C tripartite motif containing 49C protein-coding gene gene with protein product Approved 11q14.3 11q14.3 TRIM49L2 tripartite motif containing 49-like 2 "Ring finger proteins|Tripartite motif containing" "58|59" 2010-09-08 2012-05-18 2012-05-18 2015-09-08 642612 ENSG00000204449 uc010rua.2 BC126470 NM_001195234 CCDS53694 P0CI26 TRIM49C +HGNC:43973 TRIM49D1 tripartite motif containing 49D1 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 TRIM49D tripartite motif containing 49D "TRIM49DP|TRIM49D1P" "tripartite motif containing 49D, pseudogene|tripartite motif containing 49D1, pseudogene" "Ring finger proteins|Tripartite motif containing" "58|59" 2012-05-21 2013-03-06 2013-03-06 2014-02-17 399939 ENSG00000223417 OTTHUMG00000167643 uc009yvu.4 NM_001206627 CCDS60930 C9J1S8 PGOHUM00000257849 +HGNC:37217 TRIM49D2 tripartite motif containing 49D2 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 "TRIM49L|TRIM49L1|TRIM49D2P" "tripartite motif-containing 49-like|tripartite motif containing 49-like 1|tripartite motif containing 49D2, pseudogene" Tripartite motif containing 59 2010-03-04 2014-09-09 2014-09-09 2014-11-19 729384 ENSG00000233802 OTTHUMG00000167644 NM_001105522 C9J1S8 22144910 +HGNC:19017 TRIM50 tripartite motif containing 50 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 FLJ32804 TRIM50A "tripartite motif-containing 50A|tripartite motif-containing 50" "Ring finger proteins|Tripartite motif containing" "58|59" 2002-08-29 2006-03-31 2011-01-25 2016-07-28 135892 ENSG00000146755 OTTHUMG00000156805 uc032zrg.2 AY081948 NM_178125 CCDS34654 Q86XT4 MGI:2664992 RGD:631346 TRIM50 612548 6.3.2.- +HGNC:19023 TRIM51 tripartite motif-containing 51 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 TRIM51A SPRYD5 SPRY domain containing 5 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2012-05-18 2012-05-18 2016-10-05 84767 ENSG00000124900 OTTHUMG00000156437 uc010rip.3 BC005014 NM_032681 Q9BSJ1 +HGNC:37145 TRIM51BP tripartite motif-containing 51B, pseudogene pseudogene pseudogene Approved 11q14.3 11q14.3 "SPRYD5P|SPRYD5P1" "SPRY domain containing 5 pseudogene|SPRY domain containing 5 pseudogene 1" Tripartite motif containing 59 2009-07-24 2012-05-21 2012-05-21 2012-11-02 399937 ENSG00000204455 OTTHUMG00000167636 NG_011760 PGOHUM00000257911 +HGNC:43968 TRIM51CP tripartite motif-containing 51C, pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 Tripartite motif containing 59 2012-05-18 2012-05-21 2012-05-21 2012-11-02 100130105 ENSG00000249910 OTTHUMG00000160550 NG_028918 PGOHUM00000242680 +HGNC:43969 TRIM51DP tripartite motif-containing 51D, pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 Tripartite motif containing 59 2012-05-18 2012-05-21 2012-05-21 2012-11-02 100419945 ENSG00000255190 OTTHUMG00000166679 NG_024491 PGOHUM00000242695 +HGNC:43970 TRIM51EP tripartite motif-containing 51E, pseudogene pseudogene pseudogene Approved 11q14.3 11q14.3 Tripartite motif containing 59 2012-05-18 2012-05-21 2012-05-21 2012-11-02 399940 ENSG00000237706 OTTHUMG00000167650 XR_947879 PGOHUM00000257852 +HGNC:43966 TRIM51FP tripartite motif-containing 51F, pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 Tripartite motif containing 59 2012-05-21 2012-11-02 283257 ENSG00000219061 OTTHUMG00000166724 NG_028915 PGOHUM00000257816 +HGNC:43972 TRIM51GP tripartite motif-containing 51G, pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 Tripartite motif containing 59 2012-05-21 2013-01-16 120824 ENSG00000220948 OTTHUMG00000165215 NG_033009 PGOHUM00000257809 +HGNC:43977 TRIM51HP tripartite motif-containing 51H, pseudogene pseudogene pseudogene Approved 11q11 11q11 Tripartite motif containing 59 2012-05-21 2012-11-02 440041 ENSG00000166007 OTTHUMG00000166775 NR_038174 PGOHUM00000257821 +HGNC:43978 TRIM51JP tripartite motif-containing 51J, pseudogene pseudogene pseudogene Approved 2q11.1 02q11.1 Tripartite motif containing 59 2012-05-21 2012-11-02 643126 ENSG00000232717 OTTHUMG00000155155 NG_028919 PGOHUM00000258144 +HGNC:19024 TRIM52 tripartite motif containing 52 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 RNF102 tripartite motif-containing 52 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2015-09-10 84851 ENSG00000183718 OTTHUMG00000130964 uc003mnp.4 NM_032765 CCDS4467 Q96A61 RGD:1565615 TRIM52 +HGNC:49006 TRIM52-AS1 TRIM52 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 5q35.3 05q35.3 2013-07-30 2013-07-30 2013-07-30 100507602 ENSG00000248275 OTTHUMG00000163002 NR_102759 +HGNC:19025 TRIM53AP tripartite motif containing 53A, pseudogene pseudogene pseudogene Approved 11q14.3 11q14.3 "TRIM53|TRIM53P" "tripartite motif-containing 53|tripartite motif containing 53|tripartite motif containing 53, pseudogene" Tripartite motif containing 59 2004-11-17 2012-05-21 2012-05-21 2012-11-02 642569 ENSG00000225581 OTTHUMG00000167651 AP004607 NR_028346 PGOHUM00000257854 +HGNC:37144 TRIM53BP tripartite motif containing 53B, pseudogene pseudogene pseudogene Approved 11q14.3 11q14.3 "TRIM53L|TRIM53B|TRIM80P" "tripartite motif-containing 53-like|tripartite motif containing 53B|tripartite motif containing 80, pseudogene" Tripartite motif containing 59 2009-07-24 2012-05-21 2012-05-21 2012-05-21 642425 ENSG00000166013 OTTHUMG00000160564 NM_001146208 PGOHUM00000257908 +HGNC:43979 TRIM53CP tripartite motif containing 53C, pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 Tripartite motif containing 59 2012-05-21 2012-11-02 340970 ENSG00000254764 OTTHUMG00000166638 NG_021782 PGOHUM00000242232 +HGNC:16008 TRIM54 tripartite motif containing 54 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "MURF|MURF-3" RNF30 "ring finger protein 30|tripartite motif-containing 54" "Ring finger proteins|Tripartite motif containing" "58|59" 2001-07-02 2004-11-17 2011-01-25 2014-11-19 57159 ENSG00000138100 OTTHUMG00000097078 uc002rjo.4 AJ291714 NM_187841 "CCDS1745|CCDS1746" Q9BYV2 11243782 MGI:1889623 RGD:1306453 TRIM54 606474 +HGNC:14215 TRIM55 tripartite motif containing 55 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 MURF-2 RNF29 "ring finger protein 29|tripartite motif-containing 55" "Ring finger proteins|Tripartite motif containing" "58|59" 2001-07-02 2004-11-17 2011-01-25 2014-11-19 84675 ENSG00000147573 OTTHUMG00000164473 uc003xvv.4 AJ291712 NM_184085 "CCDS6184|CCDS6185|CCDS6186|CCDS6187" Q9BYV6 11243782 MGI:3036269 RGD:1306943 TRIM55 606469 +HGNC:19028 TRIM56 tripartite motif containing 56 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 RNF109 tripartite motif-containing 56 "Ring finger proteins|Tripartite motif containing" "58|59" 2003-01-03 2011-01-25 2016-10-05 81844 ENSG00000169871 OTTHUMG00000157032 uc003uxq.4 BK000511 NM_030961 CCDS43625 Q9BRZ2 MGI:2685298 TRIM56 616996 +HGNC:24150 TRIM58 tripartite motif containing 58 protein-coding gene gene with protein product Approved 1q44 01q44 BIA2 tripartite motif-containing 58 "Ring finger proteins|Tripartite motif containing" "58|59" 2004-11-17 2011-01-25 2015-08-26 25893 ENSG00000162722 OTTHUMG00000040203 uc001ido.4 AF327057 NM_015431 CCDS1636 Q8NG06 MGI:2684862 RGD:1566174 TRIM58 +HGNC:30834 TRIM59 tripartite motif containing 59 protein-coding gene gene with protein product Approved 3q25.33 03q25.33 "TSBF1|Mrf1|RNF104" TRIM57 "tripartite motif-containing 57|tripartite motif-containing 59" "Ring finger proteins|Tripartite motif containing" "58|59" 2004-07-12 2011-01-25 2016-10-05 286827 ENSG00000213186 OTTHUMG00000159034 uc003fdm.4 AY159379 NM_173084 CCDS3190 Q8IWR1 12095697 MGI:1914199 RGD:1311956 TRIM59 616148 +HGNC:21162 TRIM60 tripartite motif containing 60 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 FLJ35882 "RNF129|RNF33" "ring finger protein 129|tripartite motif-containing 60" "Ring finger proteins|Tripartite motif containing" "58|59" 2003-05-21 2004-11-17 2011-01-25 2014-11-19 166655 ENSG00000176979 OTTHUMG00000161262 uc003iqy.2 AK093201 NM_152620 CCDS3808 Q495X7 MGI:2387430 RGD:2324264 TRIM60 +HGNC:38403 TRIM60P1Y tripartite motif containing 60 pseudogene 1, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 TRIM60P1 TRIM60PY1 "tripartite motif-containing 60 pseudogene, Y-linked 1|tripartite motif-containing 60 pseudogene 1, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-18 100420362 NG_021907 PGOHUM00000233684 +HGNC:38405 TRIM60P2Y tripartite motif containing 60 pseudogene 2, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 TRIM60P2 TRIM60PY2 "tripartite motif-containing 60 pseudogene, Y-linked 2|tripartite motif-containing 60 pseudogene 2, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-19 100420363 NG_021908 PGOHUM00000233686 +HGNC:38409 TRIM60P3Y tripartite motif containing 60 pseudogene 3, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 TRIM60P3 TRIM60PY3 "tripartite motif-containing 60 pseudogene, Y-linked 3|tripartite motif-containing 60 pseudogene 3, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-19 100420364 ENSG00000227830 OTTHUMG00000041274 NG_021909 PGOHUM00000233693 +HGNC:38425 TRIM60P4Y tripartite motif containing 60 pseudogene 4, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 TRIM60P4 TRIM60PY4 "tripartite motif-containing 60 pseudogene, Y-linked 4|tripartite motif-containing 60 pseudogene 4, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-18 100420367 NG_021923 PGOHUM00000233820 +HGNC:38430 TRIM60P5Y tripartite motif containing 60 pseudogene 5, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 TRIM60P5 TRIM60PY5 "tripartite motif-containing 60 pseudogene, Y-linked 5|tripartite motif-containing 60 pseudogene 5, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-18 100420368 ENSG00000224210 OTTHUMG00000045106 NG_021927 PGOHUM00000233852 +HGNC:38432 TRIM60P6Y tripartite motif containing 60 pseudogene 6, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 TRIM60P6 TRIM60PY6 "tripartite motif-containing 60 pseudogene, Y-linked 6|tripartite motif-containing 60 pseudogene 6, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-19 100420369 NG_021928 PGOHUM00000233855 +HGNC:38433 TRIM60P7Y tripartite motif containing 60 pseudogene 7, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 TRIM60P7 TRIM60PY7 "tripartite motif-containing 60 pseudogene, Y-linked 7|tripartite motif-containing 60 pseudogene 7, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-19 100420370 NG_021929 PGOHUM00000233857 +HGNC:38458 TRIM60P8Y tripartite motif containing 60 pseudogene 8, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 TRIM60P8 TRIM60PY8 "tripartite motif-containing 60 pseudogene, Y-linked 8|tripartite motif-containing 60 pseudogene 8, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-18 100420373 ENSG00000232764 OTTHUMG00000043859 NG_004755 PGOHUM00000234032 +HGNC:38459 TRIM60P9Y tripartite motif containing 60 pseudogene 9, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 TRIM60P9 TRIM60PY9 "tripartite motif-containing 60 pseudogene, Y-linked 9|tripartite motif-containing 60 pseudogene 9, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-19 100420374 ENSG00000227251 OTTHUMG00000044063 NG_004755 PGOHUM00000234034 +HGNC:38462 TRIM60P10Y tripartite motif containing 60 pseudogene 10, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 TRIM60P10 TRIM60PY10 "tripartite motif-containing 60 pseudogene, Y-linked 10|tripartite motif-containing 60 pseudogene 10, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-18 100420376 ENSG00000232976 OTTHUMG00000045111 NG_004755 PGOHUM00000234065 +HGNC:38463 TRIM60P11Y tripartite motif containing 60 pseudogene 11, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 TRIM60P11 TRIM60PY11 "tripartite motif-containing 60 pseudogene, Y-linked 11|tripartite motif-containing 60 pseudogene 11, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-19 100420377 ENSG00000227837 OTTHUMG00000045204 NG_004755 PGOHUM00000234067 +HGNC:38465 TRIM60P12Y tripartite motif containing 60 pseudogene 12, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 TRIM60P12 TRIM60PY12 "tripartite motif-containing 60 pseudogene, Y-linked 12|tripartite motif-containing 60 pseudogene 12, Y-linked" 2010-05-12 2010-06-28 2011-01-25 2014-11-19 100420378 NG_004755 PGOHUM00000234070 +HGNC:38485 TRIM60P13 tripartite motif containing 60 pseudogene 13 pseudogene pseudogene Approved 13q31.2 13q31.2 tripartite motif-containing 60 pseudogene 13 2010-05-12 2011-01-25 2014-11-18 100132195 ENSG00000227247 OTTHUMG00000017174 NG_022984 PGOHUM00000248457 +HGNC:38486 TRIM60P14 tripartite motif containing 60 pseudogene 14 pseudogene pseudogene Approved 4q32.3 04q32.3 tripartite motif-containing 60 pseudogene 14 2010-05-12 2011-01-25 2014-11-18 653794 ENSG00000250227 OTTHUMG00000161253 NG_022090 PGOHUM00000246130 +HGNC:38487 TRIM60P15 tripartite motif containing 60 pseudogene 15 pseudogene pseudogene Approved 8q11.1 08q11.1 tripartite motif-containing 60 pseudogene 15 2010-05-12 2011-01-25 2014-11-19 100420405 ENSG00000250857 OTTHUMG00000160410 NG_022417 PGOHUM00000249648 +HGNC:38488 TRIM60P16 tripartite motif containing 60 pseudogene 16 pseudogene pseudogene Approved 7p11.2 07p11.2 tripartite motif-containing 60 pseudogene 16 2010-05-12 2011-01-25 2014-11-19 100420412 ENSG00000229909 OTTHUMG00000156293 NG_022536 PGOHUM00000232729 +HGNC:38489 TRIM60P17 tripartite motif containing 60 pseudogene 17 pseudogene pseudogene Approved 7q11.21 07q11.21 tripartite motif-containing 60 pseudogene 17 2010-05-12 2011-01-25 2014-11-19 100420414 ENSG00000223558 OTTHUMG00000156471 NG_022562 PGOHUM00000233351 +HGNC:38490 TRIM60P18 tripartite motif containing 60 pseudogene 18 pseudogene pseudogene Approved 7q11.21 07q11.21 tripartite motif-containing 60 pseudogene 18 2010-05-12 2011-01-25 2014-11-19 100420415 ENSG00000227986 OTTHUMG00000156540 NG_022564 PGOHUM00000233356 +HGNC:42010 TRIM60P19 tripartite motif containing 60 pseudogene 19 pseudogene pseudogene Approved 13q21.32 13q21.32 2011-05-31 2014-02-12 100533672 ENSG00000235737 OTTHUMG00000017033 NG_028899 PGOHUM00000256732 +HGNC:24339 TRIM61 tripartite motif containing 61 protein-coding gene gene with protein product Approved 4q32.3 04q32.3 RNF35 "ring finger protein 35|tripartite motif-containing 61" "Ring finger proteins|Tripartite motif containing" "58|59" 2004-11-19 2011-01-25 2013-01-09 391712 ENSG00000183439 OTTHUMG00000161266 uc003iqw.4 XM_373038 CCDS34093 Q5EBN2 MGI:2387432 TRIM61 +HGNC:25574 TRIM62 tripartite motif containing 62 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "FLJ10759|DEAR1" ductal epithelium-associated RING Chromosome 1 tripartite motif-containing 62 "Ring finger proteins|Tripartite motif containing" "58|59" 2004-11-19 2011-01-25 2014-11-18 55223 ENSG00000116525 OTTHUMG00000004132 uc001bxb.4 BC007999 NM_018207 "CCDS376|CCDS81297" Q9BVG3 19536326 MGI:1914775 RGD:1586169 TRIM62 616755 +HGNC:16007 TRIM63 tripartite motif containing 63 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "MURF-1|IRF|SMRZ" "muscle-specific RING finger protein 1|iris ring finger protein|striated muscle RING zinc finger protein" RNF28 "ring finger protein 28|tripartite motif containing 63, E3 ubiquitin protein ligase" "Ring finger proteins|Tripartite motif containing" "58|59" 2001-07-02 2004-11-17 2016-03-11 2016-10-12 84676 ENSG00000158022 OTTHUMG00000007510 uc001bli.3 AF353673 NM_032588 CCDS273 Q969Q1 "11243782|11283016" MGI:2447992 RGD:619964 LRG_757|http://www.lrg-sequence.org/LRG/LRG_757 TRIM63 606131 +HGNC:14663 TRIM64 tripartite motif containing 64 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 TRIM64A C11orf28 "chromosome 11 open reading frame 28|tripartite motif-containing 64" "Ring finger proteins|Tripartite motif containing" "58|59" 2001-02-28 2004-11-17 2011-01-25 2014-02-17 120146 ENSG00000204450 OTTHUMG00000167648 uc010rty.3 AP001769 XM_061890 CCDS73363 A6NGJ6 PGOHUM00000257916 +HGNC:37147 TRIM64B tripartite motif containing 64B protein-coding gene gene with protein product Approved 11q14.3 11q14.3 tripartite motif-containing 64B "Ring finger proteins|Tripartite motif containing" "58|59" 2009-07-24 2011-01-25 2015-09-08 642446 ENSG00000189253 OTTHUMG00000167638 uc021qoo.2 XM_011542954 CCDS53693 A6NI03 TRIM64B +HGNC:37148 TRIM64C tripartite motif containing 64C protein-coding gene gene with protein product Approved 11p11.12 11p11.12 tripartite motif-containing 64C "Ring finger proteins|Tripartite motif containing" "58|59" 2009-07-24 2011-01-25 2015-09-08 646754 ENSG00000214891 OTTHUMG00000166752 uc021qiy.1 NM_001206631 CCDS73287 A6NLI5 TRIM64C +HGNC:43974 TRIM64DP tripartite motif containing 64D, pseudogene pseudogene pseudogene Approved 11q14.3 11q14.3 Tripartite motif containing 59 2012-05-21 2012-11-02 727828 ENSG00000254751 OTTHUMG00000167631 NG_028916 PGOHUM00000257906 +HGNC:43975 TRIM64EP tripartite motif containing 64E, pseudogene pseudogene pseudogene Approved 11q14.3 11q14.3 Tripartite motif containing 59 2012-05-21 2012-11-02 440061 ENSG00000223709 OTTHUMG00000167656 NG_028917 PGOHUM00000257857 +HGNC:43976 TRIM64FP tripartite motif containing 64F, pseudogene pseudogene pseudogene Approved 2q11.1 02q11.1 Tripartite motif containing 59 2012-05-21 2012-11-02 390233 ENSG00000226185 OTTHUMG00000155177 NG_028781 PGOHUM00000240791 +HGNC:27316 TRIM65 tripartite motif containing 65 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 tripartite motif-containing 65 "Ring finger proteins|Tripartite motif containing" "58|59" 2004-11-19 2011-01-25 2014-11-19 201292 ENSG00000141569 OTTHUMG00000132127 uc002jpx.4 BC006138 NM_173547 CCDS11732 Q6PJ69 12477932 MGI:2442815 RGD:1559497 TRIM65 +HGNC:29005 TRIM66 tripartite motif containing 66 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "KIAA0298|TIF1D" C11orf29 "chromosome 11 open reading frame 29|tripartite motif-containing 66" "Tripartite motif containing|PHD finger proteins" "59|88" 2004-11-19 2011-01-25 2014-11-19 9866 ENSG00000166436 OTTHUMG00000150481 uc057ysc.1 AB002296 XM_084529 O15016 9205841 MGI:2152406 RGD:1595847 TRIM66 612000 objectId:2783 +HGNC:31859 TRIM67 tripartite motif containing 67 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 TNL tripartite motif-containing 67 "Ring finger proteins|Tripartite motif containing|Fibronectin type III domain containing" "58|59|555" 2004-11-19 2011-01-25 2014-11-19 440730 ENSG00000119283 OTTHUMG00000037958 uc009xfn.2 AK126782 NM_001004342 "CCDS44333|CCDS73048" Q6ZTA4 MGI:3045323 RGD:1560667 TRIM67 610584 +HGNC:21161 TRIM68 tripartite motif containing 68 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "SS-56|FLJ10369" RNF137 "ring finger protein 137|tripartite motif-containing 68" "Ring finger proteins|Tripartite motif containing" "58|59" 2003-05-21 2004-11-17 2011-01-25 2014-11-19 55128 ENSG00000167333 OTTHUMG00000165723 uc001lzf.2 AF360739 NM_018073 CCDS31356 Q6AZZ1 11597395 MGI:2142077 RGD:1593867 TRIM68 613184 +HGNC:17857 TRIM69 tripartite motif containing 69 protein-coding gene gene with protein product Approved 15q15-q21 15q15-q21 "Trif|TRIMLESS" RNF36 "ring finger protein 36|tripartite motif-containing 69" "Ring finger proteins|Tripartite motif containing" "58|59" 2002-01-10 2006-09-26 2011-01-25 2015-08-26 140691 ENSG00000185880 OTTHUMG00000131246 uc001zuf.3 AF302088 NM_182985 "CCDS10114|CCDS32220|CCDS73719|CCDS76745|CCDS76746" Q86WT6 MGI:1918178 RGD:1305074 TRIM69 616017 +HGNC:32669 TRIM71 tripartite motif containing 71 protein-coding gene gene with protein product Approved 3p22.3 03p22.3 "LIN41|LIN-41" tripartite motif containing 71, E3 ubiquitin protein ligase "Ring finger proteins|Tripartite motif containing" "58|59" 2006-03-30 2016-06-30 2016-06-30 131405 ENSG00000206557 OTTHUMG00000155778 uc003cff.4 NM_001039111 CCDS43060 Q2Q1W2 MGI:2685973 RGD:1566388 TRIM71 +HGNC:32671 TRIM72 tripartite motif containing 72 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MG53 mitsugumin 53 "tripartite motif-containing 72|tripartite motif containing 72, E3 ubiquitin protein ligase" "Ring finger proteins|Tripartite motif containing" "58|59" 2006-03-30 2016-03-22 2016-03-22 493829 ENSG00000177238 OTTHUMG00000176754 uc002ebn.3 AK090695 NM_001008274 CCDS32437 Q6ZMU5 "20399744|23354051" MGI:3612190 RGD:1562778 TRIM72 613288 +HGNC:18162 TRIM73 tripartite motif containing 73 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 TRIM50B "tripartite motif-containing 50B|tripartite motif-containing 73" "Ring finger proteins|Tripartite motif containing" "58|59" 2002-08-29 2006-03-31 2011-01-25 2015-09-08 375593 ENSG00000178809 OTTHUMG00000156075 uc003udc.2 AF498998 NM_198924 CCDS34665 Q86UV7 TRIM73 612549 +HGNC:17453 TRIM74 tripartite motif containing 74 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 MGC45440 TRIM50C "tripartite motif-containing 50C|tripartite motif-containing 74" "Ring finger proteins|Tripartite motif containing" "58|59" 2002-08-29 2006-03-31 2011-01-25 2015-09-08 378108 ENSG00000155428 OTTHUMG00000129851 uc022afm.3 AF498999 NM_198853 CCDS5545 Q86UV6 TRIM74 612550 +HGNC:32686 TRIM75P tripartite motif containing 75, pseudogene pseudogene pseudogene Approved 4q32.3 04q32.3 TRIM75 "tripartite motif-containing 75|tripartite motif containing 75" "Ring finger proteins|Tripartite motif containing" "58|59" 2006-04-05 2014-04-01 2014-04-01 2016-04-12 391714 ENSG00000250374 OTTHUMG00000161257 NG_016722 A6NK02 +HGNC:34228 TRIM77 tripartite motif containing 77 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 TRIM77P "tripartite motif-containing 77|tripartite motif containing 77, pseudogene" "Ring finger proteins|Tripartite motif containing" "58|59" 2008-05-29 2013-01-14 2013-01-14 2014-02-17 390231 ENSG00000214414 OTTHUMG00000167624 uc010rtw.2 NM_001146162 CCDS60929 I1YAP6 PGOHUM00000257902 +HGNC:43980 TRIM77BP tripartite motif containing 77B, pseudogene pseudogene pseudogene Approved 11p11.12 11p11.12 2014-04-01 2014-04-01 2014-04-01 646770 ENSG00000254993 OTTHUMG00000166641 NG_028906 PGOHUM00000242237 +HGNC:17232 TRIM78P tripartite motif containing 78, pseudogene pseudogene pseudogene Approved 11p15 11p15 TRIMP1 "tripartite motif-containing pseudogene 1|tripartite motif-containing 78, pseudogene" Tripartite motif containing 59 2001-11-21 2009-11-27 2011-01-25 2011-05-17 117852 AF230412 NR_002777 11331580 +HGNC:51490 TRIM80P tripartite motif containing 80, pseudogene pseudogene pseudogene Approved 17q25.1 17q25.1 TRIM47LP 2015-01-19 2015-01-19 106480328 ENSG00000232724 OTTHUMG00000154700 NG_044485 MGI:3588186 +HGNC:26698 TRIML1 tripartite motif family like 1 protein-coding gene gene with protein product Approved 4q35.2 04q35.2 "FLJ36180|RNF209" Ring finger proteins 58 2007-02-01 2015-11-13 2015-11-13 339976 ENSG00000184108 OTTHUMG00000160237 uc003izm.2 AK093499 NM_178556 CCDS3851 Q8N9V2 12477932 MGI:2687279 RGD:1305337 TRIML1 +HGNC:26378 TRIML2 tripartite motif family like 2 protein-coding gene gene with protein product Approved 4q35.2 04q35.2 "FLJ25801|SPRYD6" SPRY domain containing 6 2007-12-14 2015-11-13 2015-11-13 205860 ENSG00000179046 OTTHUMG00000160225 uc003izl.4 AK098667 NM_173553 CCDS3850 Q8N7C3 MGI:3642989 RGD:1565382 TRIML2 +HGNC:12303 TRIO trio Rho guanine nucleotide exchange factor protein-coding gene gene with protein product Approved 5p15.2 05p15.2 ARHGEF23 triple functional domain (PTPRF interacting) "I-set domain containing|Rho guanine nucleotide exchange factors" "593|722" 1997-01-29 2012-07-12 2016-10-05 7204 ENSG00000038382 OTTHUMG00000131057 uc003jff.4 AF091395 NM_007118 CCDS3883 O75962 8643598 MGI:1927230 RGD:1308360 TRIO 601893 objectId:2255 +HGNC:17009 TRIOBP TRIO and F-actin binding protein protein-coding gene gene with protein product Approved 22q13.1 22q13.1 "HRIHFB2122|KIAA1662|Tara|TAP68" DFNB28 Pleckstrin homology domain containing 682 2005-10-04 2014-11-18 11078 ENSG00000100106 OTTHUMG00000150657 uc003atv.4 AB051449 NM_001039141 "CCDS33644|CCDS43015|CCDS43016" Q9H2D6 "11148140|16385457|16385458" MGI:1349410 RGD:1308485 TRIOBP 609761 159213 +HGNC:12310 TRIP4 thyroid hormone receptor interactor 4 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "HsT17391|ZC2HC5" zinc finger, C2HC5-type Zinc fingers 26 1999-03-19 2016-10-05 9325 ENSG00000103671 OTTHUMG00000133033 uc002anm.3 L40371 NM_016213 CCDS10194 Q15650 7776974 MGI:1928469 RGD:1306838 TRIP4 604501 +HGNC:12311 TRIP6 thyroid hormone receptor interactor 6 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "ZRP-1|OIP1|MGC10556|MGC10558|MGC29959|MGC3837|MGC4423" LIM domain containing 1218 1997-10-16 2016-10-05 7205 ENSG00000087077 OTTHUMG00000157029 uc003uww.4 "L40374|AF000974" NM_003302 CCDS5708 Q15654 "9598321|7776974" MGI:1343458 RGD:1583180 TRIP6 602933 +HGNC:12304 TRIP10 thyroid hormone receptor interactor 10 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "STP|HSTP|CIP4" Cdc42-interacting protein STOT salt tolerator "Minor histocompatibility antigens|F-BAR domain containing " "870|1288" 1999-06-14 2014-11-18 9322 ENSG00000125733 OTTHUMG00000150255 uc002mfr.5 AB072596 XM_005259683 "CCDS12172|CCDS74271|CCDS74272" Q15642 "7776974|9210375|11294612" MGI:2146901 RGD:621145 TRIP10 604504 +HGNC:12305 TRIP11 thyroid hormone receptor interactor 11 protein-coding gene gene with protein product Approved 14q32.12 14q32.12 "CEV14|Trip230|GMAP-210|GMAP210" 1999-03-19 2016-01-15 9321 ENSG00000100815 OTTHUMG00000171128 uc001xzy.4 L40380 NM_001321851 CCDS9899 Q15643 "7776974|9373237" MGI:1924393 RGD:1586166 TRIP11 604505 225372 +HGNC:12306 TRIP12 thyroid hormone receptor interactor 12 protein-coding gene gene with protein product Approved 2q36.3 02q36.3 KIAA0045 1999-03-19 2014-11-19 9320 ENSG00000153827 OTTHUMG00000153623 uc002vpw.3 L40383 NM_004238 "CCDS33391|CCDS63145|CCDS63146" Q14669 7776974 MGI:1309481 RGD:1306607 TRIP12 604506 +HGNC:12307 TRIP13 thyroid hormone receptor interactor 13 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 16E1BP thyroid receptor interacting protein 13 AAA ATPases 413 2000-01-04 2016-10-05 9319 ENSG00000071539 OTTHUMG00000090349 uc003jbr.4 L40384 NM_004237 CCDS3858 Q15645 7776974 MGI:1916966 RGD:1308516 TRIP13 604507 +HGNC:27828 TRIQK triple QxxK/R motif containing protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "DKFZp779L1068|PRO0845|LOC286144" C8orf83 chromosome 8 open reading frame 83 2008-08-12 2012-04-18 2012-04-18 2015-09-08 286144 ENSG00000205133 OTTHUMG00000164162 uc064omt.1 "AK096398|BC110326|BC031029|BC065838" NM_001171795 CCDS55261 Q629K1 18828657 MGI:3650048 RGD:1561260 TRIQK +HGNC:20286 TRIT1 tRNA isopentenyltransferase 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "FLJ20061|IPT" 2004-01-15 2014-11-19 54802 ENSG00000043514 OTTHUMG00000009245 uc057fcv.1 AF074918 NM_017646 "CCDS30681|CCDS81302|CCDS81303" Q9H3H1 "11111046|15870694" MGI:1914216 RGD:1304781 TRIT1 2.5.1.8 +HGNC:34668 TRK-CTT1-1 transfer RNA-Lys (CTT) 1-1 non-coding RNA RNA, transfer Approved 14 14 TRNAK13 transfer RNA lysine 13 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189107 HG983908 +HGNC:34572 TRK-CTT1-2 transfer RNA-Lys (CTT) 1-2 non-coding RNA RNA, transfer Approved 15 15 TRNAK6 transfer RNA lysine 6 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189013 HG983909 +HGNC:34761 TRK-CTT2-1 transfer RNA-Lys (CTT) 2-1 non-coding RNA RNA, transfer Approved 1 01 TRNAK20 transfer RNA lysine 20 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189198 HG983910 +HGNC:34967 TRK-CTT2-2 transfer RNA-Lys (CTT) 2-2 non-coding RNA RNA, transfer Approved 5 05 "TRNAK33|TRK-CTT2-3" "transfer RNA lysine 33 (anticodon CUU)|transfer RNA-Lys (CTT) 2-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189399 HG983912 +HGNC:33199 TRK-CTT2-3 transfer RNA-Lys (CTT) 2-3 non-coding RNA RNA, transfer Approved 5q35.3 05q35.3 "TRK2|TRNAK2|TRK-CTT2-4" "tRNA lysine 2 (anticodon CUU)|transfer RNA lysine 2 (anticodon CUU)|transfer RNA-Lys (CTT) 2-4" Cytoplasmic transfer RNAs 842 2006-12-13 2016-02-15 2016-02-15 2016-02-15 790966 HG983913 2766931 612996 +HGNC:34671 TRK-CTT2-4 transfer RNA-Lys (CTT) 2-4 non-coding RNA RNA, transfer Approved 6 06 "TRNAK14|TRK-CTT2-5" "transfer RNA lysine 14 (anticodon CUU)|transfer RNA-Lys (CTT) 2-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189110 HG983914 +HGNC:34848 TRK-CTT2-5 transfer RNA-Lys (CTT) 2-5 non-coding RNA RNA, transfer Approved 16 16 "TRNAK26|TRK-CTT2-2" "transfer RNA lysine 26 (anticodon CUU)|transfer RNA-Lys (CTT) 2-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189282 HG983911 +HGNC:34681 TRK-CTT3-1 transfer RNA-Lys (CTT) 3-1 non-coding RNA RNA, transfer Approved 16 16 TRNAK15 transfer RNA lysine 15 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189119 HG983915 +HGNC:34621 TRK-CTT4-1 transfer RNA-Lys (CTT) 4-1 non-coding RNA RNA, transfer Approved 16 16 TRNAK9 transfer RNA lysine 9 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189062 HG983916 +HGNC:34772 TRK-CTT5-1 transfer RNA-Lys (CTT) 5-1 non-coding RNA RNA, transfer Approved 16 16 TRNAK21 transfer RNA lysine 21 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189209 HG983917 +HGNC:34552 TRK-CTT6-1 transfer RNA-Lys (CTT) 6-1 non-coding RNA RNA, transfer Approved 18 18 TRNAK4 transfer RNA lysine 4 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100188995 HG983918 +HGNC:35098 TRK-CTT7-1 transfer RNA-Lys (CTT) 7-1 non-coding RNA RNA, transfer Approved 1p36.13 01p36.13 "TRNAL48|TRNAQ49P" transfer RNA glutamine 49 (anticodon CUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-18 101056699 HG983919 NG_032957 +HGNC:34807 TRK-CTT8-1 transfer RNA-Lys (CTT) 8-1 non-coding RNA RNA, transfer Approved 16 16 TRNAK24 transfer RNA lysine 24 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189244 HG983920 +HGNC:34742 TRK-CTT9-1 transfer RNA-Lys (CTT) 9-1 non-coding RNA RNA, transfer Approved 5 05 TRNAK18 transfer RNA lysine 18 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189180 HG983921 +HGNC:34935 TRK-CTT10-1 transfer RNA-Lys (CTT) 10-1 non-coding RNA RNA, transfer Approved 19 19 TRNAK30 transfer RNA lysine 30 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189367 HG983922 +HGNC:34878 TRK-CTT11-1 transfer RNA-Lys (CTT) 11-1 non-coding RNA RNA, transfer Approved 19 19 TRNAK28 transfer RNA lysine 28 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189311 HG983923 +HGNC:35036 TRK-CTT12-1 transfer RNA-Lys (CTT) 12-1 non-coding RNA RNA, transfer Approved 1p34.3 01p34.3 TRNAK36P transfer RNA lysine 36 (anticodon CUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189464 HG983924 NG_008522 +HGNC:35009 TRK-CTT13-1 transfer RNA-Lys (CTT) 13-1 non-coding RNA RNA, transfer Approved 1q24.1 01q24.1 TRNAK35P transfer RNA lysine 35 (anticodon CUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189439 HG983925 NG_008599 +HGNC:35039 TRK-CTT14-1 transfer RNA-Lys (CTT) 14-1 non-coding RNA RNA, transfer Approved 16p13.3 16p13.3 TRNAK37P transfer RNA lysine 37 (anticodon CUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189467 HG983926 NG_008525 +HGNC:34556 TRK-CTT15-1 transfer RNA-Lys (CTT) 15-1 non-coding RNA RNA, transfer Approved 11 11 TRNAK5 transfer RNA lysine 5 (anticodon CUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100188999 HG983927 +HGNC:35113 TRK-CTT16-1 transfer RNA-Lys (CTT) 16-1 non-coding RNA RNA, transfer Approved 15q24.3 15q24.3 TRNAK42P transfer RNA lysine 42 (anticodon CUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189536 HG983928 NG_008594 +HGNC:34687 TRK-TTT1-1 transfer RNA-Lys (TTT) 1-1 non-coding RNA RNA, transfer Approved 16 16 TRNAK17 transfer RNA lysine 17 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189125 HG983929 +HGNC:34860 TRK-TTT2-1 transfer RNA-Lys (TTT) 2-1 non-coding RNA RNA, transfer Approved 11 11 TRNAK27 transfer RNA lysine 27 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189294 HG983930 +HGNC:34684 TRK-TTT3-1 transfer RNA-Lys (TTT) 3-1 non-coding RNA RNA, transfer Approved 1 01 TRNAK16 transfer RNA lysine 16 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189122 HG983931 +HGNC:34994 TRK-TTT3-2 transfer RNA-Lys (TTT) 3-2 non-coding RNA RNA, transfer Approved 1 01 TRNAK34 transfer RNA lysine 34 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189425 HG983932 +HGNC:34797 TRK-TTT3-3 transfer RNA-Lys (TTT) 3-3 non-coding RNA RNA, transfer Approved 6 06 "TRNAK22|TRK-TTT3-5" "transfer RNA lysine 22 (anticodon UUU)|transfer RNA-Lys (TTT) 3-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189234 HG983935 +HGNC:33256 TRK-TTT3-4 transfer RNA-Lys (TTT) 3-4 non-coding RNA RNA, transfer Approved 11q12.1 11q12.1 "TRNAK3|TRK-TTT3-3" "transfer RNA lysine 3 (anticodon UUU)|transfer RNA-Lys (TTT) 3-3" Cytoplasmic transfer RNAs 842 2007-02-01 2016-02-15 2016-02-15 2016-02-15 100049613 HG983933 3678837 +HGNC:12314 TRK-TTT3-5 transfer RNA-Lys (TTT) 3-5 non-coding RNA RNA, transfer Approved 17p13.1 17p13.1 "TRK1|TRNAK1|TRK-TTT3-4" "tRNA lysine 1|tRNA lysine 1 (anticodon UUU)|transfer RNA lysine 1 (anticodon UUU)|transfer RNA-Lys (TTT) 3-4" Cytoplasmic transfer RNAs 842 1989-06-30 2016-02-15 2016-02-15 2016-02-15 7206 HG983934 6296772 189918 +HGNC:34612 TRK-TTT4-1 transfer RNA-Lys (TTT) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAK8 transfer RNA lysine 8 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189053 HG983936 +HGNC:34801 TRK-TTT5-1 transfer RNA-Lys (TTT) 5-1 non-coding RNA RNA, transfer Approved 11 11 TRNAK23 transfer RNA lysine 23 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189238 HG983937 +HGNC:34745 TRK-TTT6-1 transfer RNA-Lys (TTT) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAK19 transfer RNA lysine 19 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189182 HG983938 +HGNC:34900 TRK-TTT7-1 transfer RNA-Lys (TTT) 7-1 non-coding RNA RNA, transfer Approved 6 06 TRNAK29 transfer RNA lysine 29 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189332 HG983939 +HGNC:34659 TRK-TTT8-1 transfer RNA-Lys (TTT) 8-1 non-coding RNA RNA, transfer Approved 1 01 TRNAK11 transfer RNA lysine 11 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189098 HG983940 +HGNC:34958 TRK-TTT9-1 transfer RNA-Lys (TTT) 9-1 non-coding RNA RNA, transfer Approved 6 06 TRNAK31 transfer RNA lysine 31 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189390 HG983941 +HGNC:35053 TRK-TTT10-1 transfer RNA-Lys (TTT) 10-1 non-coding RNA RNA, transfer Approved 19q13.2 19q13.2 TRNAK38P transfer RNA lysine 38 (anticodon UUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189480 HG983942 NG_008538 +HGNC:34665 TRK-TTT11-1 transfer RNA-Lys (TTT) 11-1 non-coding RNA RNA, transfer Approved 12 12 TRNAK12 transfer RNA lysine 12 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189104 HG983943 +HGNC:34610 TRK-TTT12-1 transfer RNA-Lys (TTT) 12-1 non-coding RNA RNA, transfer Approved 19 19 TRNAK7 transfer RNA lysine 7 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189051 HG983944 +HGNC:35116 TRK-TTT13-1 transfer RNA-Lys (TTT) 13-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNAK43P transfer RNA lysine 43 (anticodon UUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189539 HG983945 NG_008597 +HGNC:35089 TRK-TTT14-1 transfer RNA-Lys (TTT) 14-1 non-coding RNA RNA, transfer Approved 14q24.3 14q24.3 TRNAK40P transfer RNA lysine 40 (anticodon UUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189514 HG983946 NG_008572 +HGNC:35079 TRK-TTT15-1 transfer RNA-Lys (TTT) 15-1 non-coding RNA RNA, transfer Approved 2q36.1 02q36.1 TRNAK39P transfer RNA lysine 39 (anticodon UUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189504 HG983947 NG_008562 +HGNC:34960 TRK-TTT16-1 transfer RNA-Lys (TTT) 16-1 non-coding RNA RNA, transfer Approved 19 19 TRNAK32 transfer RNA lysine 32 (anticodon UUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189392 HG983948 +HGNC:35094 TRK-TTT17-1 transfer RNA-Lys (TTT) 17-1 non-coding RNA RNA, transfer Approved 8p22 08p22 TRNAK41P transfer RNA lysine 41 (anticodon UUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189519 HG983949 NG_008577 +HGNC:34930 TRL-AAG1-1 transfer RNA-Leu (AAG) 1-1 non-coding RNA RNA, transfer Approved 5 05 TRNAL34 transfer RNA leucine 34 (anticodon AAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189362 HG983868 +HGNC:34836 TRL-AAG1-2 transfer RNA-Leu (AAG) 1-2 non-coding RNA RNA, transfer Approved 5 05 TRNAL24 transfer RNA leucine 24 (anticodon AAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189273 HG983869 +HGNC:34561 TRL-AAG1-3 transfer RNA-Leu (AAG) 1-3 non-coding RNA RNA, transfer Approved 5 05 TRNAL4 transfer RNA leucine 4 (anticodon AAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189004 HG983870 +HGNC:34895 TRL-AAG2-1 transfer RNA-Leu (AAG) 2-1 non-coding RNA RNA, transfer Approved 5 05 "TRNAL32|TRL-AAG2-3" "transfer RNA leucine 32 (anticodon AAG)|transfer RNA-Leu (AAG) 2-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189328 HG983873 +HGNC:34765 TRL-AAG2-2 transfer RNA-Leu (AAG) 2-2 non-coding RNA RNA, transfer Approved 6 06 "TRNAL20|TRL-AAG2-4" "transfer RNA leucine 20 (anticodon AAG)|transfer RNA-Leu (AAG) 2-4" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189202 HG983874 +HGNC:12315 TRL-AAG2-3 transfer RNA-Leu (AAG) 2-3 non-coding RNA RNA, transfer Approved 14q11.2 14q11.2 "TRNP1|TRL1|TRNAL1|TRL-AAG2-1" "tRNA leucine 1|transfer RNA leucine 1 (anticodon CUU)|transfer RNA leucine 1 (anticodon AAG)|transfer RNA-Leu (AAG) 2-1" Cytoplasmic transfer RNAs 842 1989-06-30 2016-02-15 2016-02-15 2016-02-15 7207 HG983871 1686015 189932 +HGNC:34857 TRL-AAG2-4 transfer RNA-Leu (AAG) 2-4 non-coding RNA RNA, transfer Approved 16 16 "TRNAL27|TRL-AAG2-2" "transfer RNA leucine 27 (anticodon AAG)|transfer RNA-Leu (AAG) 2-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189291 HG983872 +HGNC:34731 TRL-AAG3-1 transfer RNA-Leu (AAG) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL17 transfer RNA leucine 17 (anticodon AAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189169 HG983875 +HGNC:34680 TRL-AAG4-1 transfer RNA-Leu (AAG) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL12 transfer RNA leucine 12 (anticodon AAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189118 HG983876 +HGNC:34602 TRL-AAG5-1 transfer RNA-Leu (AAG) 5-1 non-coding RNA RNA, transfer Approved 2 02 TRNAL9 transfer RNA leucine 9 (anticodon AAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189043 HG983877 +HGNC:34998 TRL-AAG6-1 transfer RNA-Leu (AAG) 6-1 non-coding RNA RNA, transfer Approved 20 20 TRNAL39 transfer RNA leucine 39 (anticodon AAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189429 HG983878 +HGNC:35068 TRL-AAG7-1 transfer RNA-Leu (AAG) 7-1 non-coding RNA RNA, transfer Approved 5q35.3 05q35.3 TRNAL43P transfer RNA leucine 43 (anticodon AAG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189493 HG983879 NG_008551 +HGNC:34917 TRL-AAG8-1 transfer RNA-Leu (AAG) 8-1 non-coding RNA RNA, transfer Approved 3 03 TRNAL33 transfer RNA leucine 33 (anticodon AAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189349 HG983880 +HGNC:38583 TRL-CAA1-1 transfer RNA-Leu (CAA) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL49 transfer RNA leucine 49 (anticodon CAA) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 103456511 HG983881 +HGNC:34800 TRL-CAA1-2 transfer RNA-Leu (CAA) 1-2 non-coding RNA RNA, transfer Approved 6 06 TRNAL22 transfer RNA leucine 22 (anticodon CAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189237 HG983882 +HGNC:34867 TRL-CAA2-1 transfer RNA-Leu (CAA) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL28 transfer RNA leucine 28 (anticodon CAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189301 HG983883 +HGNC:34597 TRL-CAA3-1 transfer RNA-Leu (CAA) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL8 transfer RNA leucine 8 (anticodon CAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189038 HG983884 +HGNC:34762 TRL-CAA4-1 transfer RNA-Leu (CAA) 4-1 non-coding RNA RNA, transfer Approved 1 01 TRNAL19 transfer RNA leucine 19 (anticodon CAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189199 HG983885 +HGNC:34938 TRL-CAA5-1 transfer RNA-Leu (CAA) 5-1 non-coding RNA RNA, transfer Approved 11 11 TRNAL36 transfer RNA leucine 36 (anticodon CAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189370 HG983886 +HGNC:34560 TRL-CAA6-1 transfer RNA-Leu (CAA) 6-1 non-coding RNA RNA, transfer Approved 1 01 TRNAL3 transfer RNA leucine 3 (anticodon CAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189003 HG983887 +HGNC:35074 TRL-CAA7-1 transfer RNA-Leu (CAA) 7-1 non-coding RNA RNA, transfer Approved 10p11.21 10p11.21 TRNAL44P transfer RNA leucine 44 (anticodon CAA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189499 HG983888 NG_008557 +HGNC:34962 TRL-CAG1-1 transfer RNA-Leu (CAG) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAL38 transfer RNA leucine 38 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189394 HG983889 +HGNC:34568 TRL-CAG1-2 transfer RNA-Leu (CAG) 1-2 non-coding RNA RNA, transfer Approved 1 01 TRNAL5 transfer RNA leucine 5 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189009 HG983890 +HGNC:34883 TRL-CAG1-3 transfer RNA-Leu (CAG) 1-3 non-coding RNA RNA, transfer Approved 1 01 TRNAL30 transfer RNA leucine 30 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189316 HG983891 +HGNC:34932 TRL-CAG1-4 transfer RNA-Leu (CAG) 1-4 non-coding RNA RNA, transfer Approved 1 01 TRNAL35 transfer RNA leucine 35 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189364 HG983892 +HGNC:34701 TRL-CAG1-5 transfer RNA-Leu (CAG) 1-5 non-coding RNA RNA, transfer Approved 1 01 TRNAL14 transfer RNA leucine 14 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189139 HG983893 +HGNC:34577 TRL-CAG1-6 transfer RNA-Leu (CAG) 1-6 non-coding RNA RNA, transfer Approved 1 01 TRNAL6 transfer RNA leucine 6 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189018 HG983894 +HGNC:34854 TRL-CAG1-7 transfer RNA-Leu (CAG) 1-7 non-coding RNA RNA, transfer Approved 6 06 TRNAL26 transfer RNA leucine 26 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189288 HG983895 +HGNC:34692 TRL-CAG2-1 transfer RNA-Leu (CAG) 2-1 non-coding RNA RNA, transfer Approved 16 16 TRNAL13 transfer RNA leucine 13 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189130 HG983896 +HGNC:34649 TRL-CAG2-2 transfer RNA-Leu (CAG) 2-2 non-coding RNA RNA, transfer Approved 16 16 TRNAL11 transfer RNA leucine 11 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189089 HG983897 +HGNC:34767 TRL-CAG3-1 transfer RNA-Leu (CAG) 3-1 non-coding RNA RNA, transfer Approved 5 05 TRNAL21 transfer RNA leucine 21 (anticodon CAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189204 HG983898 +HGNC:34880 TRL-TAA1-1 transfer RNA-Leu (TAA) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL29 transfer RNA leucine 29 (anticodon UAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189313 HG983899 +HGNC:34726 TRL-TAA2-1 transfer RNA-Leu (TAA) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL16 transfer RNA leucine 16 (anticodon UAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189164 HG983900 +HGNC:34803 TRL-TAA3-1 transfer RNA-Leu (TAA) 3-1 non-coding RNA RNA, transfer Approved 11 11 TRNAL23 transfer RNA leucine 23 (anticodon UAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189240 HG983901 +HGNC:34626 TRL-TAA4-1 transfer RNA-Leu (TAA) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL10 transfer RNA leucine 10 (anticodon UAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189067 HG983902 +HGNC:34737 TRL-TAA5-1 transfer RNA-Leu (TAA) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAL18 transfer RNA leucine 18 (anticodon UAA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189175 HG983903 +HGNC:12316 TRL-TAG1-1 transfer RNA-Leu (TAG) 1-1 non-coding RNA RNA, transfer Approved 17p13.1 17p13.1 "TRL2|TRNAL2" "tRNA leucine 2|tRNA leucine 2 (anticodon UAG)|transfer RNA leucine 2 (anticodon UAG)" Cytoplasmic transfer RNAs 842 1989-06-30 2014-06-19 2014-06-19 2014-06-19 7208 HG983904 3637777 189920 +HGNC:34713 TRL-TAG2-1 transfer RNA-Leu (TAG) 2-1 non-coding RNA RNA, transfer Approved 14 14 TRNAL15 transfer RNA leucine 15 (anticodon UAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189151 HG983905 +HGNC:34591 TRL-TAG3-1 transfer RNA-Leu (TAG) 3-1 non-coding RNA RNA, transfer Approved 16 16 TRNAL7 transfer RNA leucine 7 (anticodon UAG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189032 HG983906 +HGNC:35011 TRL-TAG4-1 transfer RNA-Leu (TAG) 4-1 non-coding RNA RNA, transfer Approved 14q11.2 14q11.2 TRNAL40P transfer RNA leucine 40 (anticodon UAG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189441 HG983907 NG_008497 +HGNC:34764 TRM-CAT1-1 transfer RNA-Met (CAT) 1-1 non-coding RNA RNA, transfer Approved 8 08 TRNAM11 transfer RNA methionine 11 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189201 HG983950 +HGNC:34697 TRM-CAT2-1 transfer RNA-Met (CAT) 2-1 non-coding RNA RNA, transfer Approved 16 16 TRNAM9 transfer RNA methionine 9 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189135 HG983951 +HGNC:34779 TRM-CAT3-1 transfer RNA-Met (CAT) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAM12 transfer RNA methionine 12 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189216 HG983952 +HGNC:34673 TRM-CAT3-2 transfer RNA-Met (CAT) 3-2 non-coding RNA RNA, transfer Approved 6 06 TRNAM8 transfer RNA methionine 8 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189111 HG983953 +HGNC:34661 TRM-CAT4-1 transfer RNA-Met (CAT) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAM7 transfer RNA methionine 7 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189100 HG983954 +HGNC:34922 TRM-CAT4-2 transfer RNA-Met (CAT) 4-2 non-coding RNA RNA, transfer Approved 6 06 TRNAM19 transfer RNA methionine 19 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189354 HG983955 +HGNC:34959 TRM-CAT4-3 transfer RNA-Met (CAT) 4-3 non-coding RNA RNA, transfer Approved 6 06 TRNAM20 transfer RNA methionine 20 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189391 HG983956 +HGNC:34869 TRM-CAT5-1 transfer RNA-Met (CAT) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAM16 transfer RNA methionine 16 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189303 HG983957 +HGNC:34789 TRM-CAT6-1 transfer RNA-Met (CAT) 6-1 non-coding RNA RNA, transfer Approved 16 16 TRNAM13 transfer RNA methionine 13 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189226 HG983958 +HGNC:34645 TRM-CAT7-1 transfer RNA-Met (CAT) 7-1 non-coding RNA RNA, transfer Approved 6 06 TRNAM5 transfer RNA methionine 5 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189085 HG983959 +HGNC:12321 TRMEP1 tRNA methionine elongator pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 1993-05-04 2014-11-19 7211 L15363 NG_001205 8293999 +HGNC:30967 TRMO tRNA methyltransferase O protein-coding gene gene with protein product Approved 9q22.33 09q22.33 HSPC219 C9orf156 chromosome 9 open reading frame 156 2004-05-17 2015-10-16 2015-10-16 2016-10-05 51531 ENSG00000136932 OTTHUMG00000021007 AK023069 NM_016481 "CCDS6730|CCDS83387" Q9BU70 25063302 MGI:1922003 RGD:1305420 +HGNC:25980 TRMT1 tRNA methyltransferase 1 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 "FLJ20244|TRM1" tRNA methyltransferase 1 homolog (S. cerevisiae) 2005-08-11 2015-09-25 2016-10-05 55621 ENSG00000104907 OTTHUMG00000180730 uc060ugy.1 AF196479 NM_017722 "CCDS12293|CCDS45997" Q9NXH9 10982862 MGI:1289155 RGD:1305992 TRMT1 611669 2.1.1.216 +HGNC:16782 TRMT1L tRNA methyltransferase 1 like protein-coding gene gene with protein product Approved 1q25.3 01q25.3 TRM1-like C1orf25 "chromosome 1 open reading frame 25|TRM1 tRNA methyltransferase 1-like|tRNA methyltransferase 1 homolog (S. cerevisiae)-like|tRNA methyltransferase 1-like" 2001-10-05 2011-01-24 2015-11-11 2016-10-05 81627 ENSG00000121486 OTTHUMG00000035389 uc001grf.5 AF288399 NM_030934 CCDS1366 Q7Z2T5 "11318611|17198746" MGI:1916185 RGD:1307890 TRMT1L 611673 +HGNC:24974 TRMT2A tRNA methyltransferase 2 homolog A protein-coding gene gene with protein product Approved 22q11.21 22q11.21 HTF9C HpaII tiny fragments locus 9C tRNA methyltransferase 2 homolog A (S. cerevisiae) 2008-09-17 2015-09-25 2015-09-25 27037 ENSG00000099899 OTTHUMG00000150454 uc002zrk.3 BC017184 NM_022727 "CCDS13774|CCDS58793|CCDS82693" Q8IZ69 "9417108|18075473" MGI:96270 RGD:1310418 TRMT2A 611151 +HGNC:25748 TRMT2B tRNA methyltransferase 2 homolog B protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 FLJ12687 CXorf34 "chromosome X open reading frame 34|tRNA methyltransferase 2 homolog B (S. cerevisiae)" 2004-08-16 2008-09-17 2015-09-25 2015-09-25 79979 ENSG00000188917 OTTHUMG00000022017 uc004egq.4 BC020116 NM_024917 "CCDS14477|CCDS55464" Q96GJ1 14702039 MGI:2442530 RGD:1565132 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TRMT2B TRMT2B +HGNC:41116 TRMT2B-AS1 TRMT2B antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq22.1 Xq22.1 TRMT2B antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 106481789 ENSG00000225839 OTTHUMG00000022015 uc065age.1 +HGNC:23141 TRMT5 tRNA methyltransferase 5 protein-coding gene gene with protein product Approved 14q23.1 14q23.1 TRM5 tRNA (guanine(37)-N1)-methyltransferase KIAA1393 "KIAA1393|tRNA methyltransferase 5 homolog (S. cerevisiae)" 2003-11-20 2005-08-11 2013-06-05 2015-08-26 57570 ENSG00000126814 OTTHUMG00000171294 uc001xff.5 AB037814 NM_02081 CCDS32092 Q32P41 15248782 MGI:1923607 RGD:1306567 TRMT5 611023 2.1.1.228 +HGNC:20900 TRMT6 tRNA methyltransferase 6 protein-coding gene gene with protein product Approved 20p12.3 20p12.3 "GCD10|MGC5029|Gcd10p|CGI-09" tRNA methyltransferase 6 homolog (S. cerevisiae) 2007-07-31 2014-11-17 2014-11-19 51605 ENSG00000089195 OTTHUMG00000031816 uc002wmh.3 AK000613 XM_017027875 "CCDS13093|CCDS63225" Q9UJA5 16043508 MGI:1914176 RGD:1308877 TRMT6 +HGNC:28403 TRMT10A tRNA methyltransferase 10A protein-coding gene gene with protein product Approved 4q23 04q23 "MGC27034|TRM10" RG9MTD2 "RNA (guanine-9-) methyltransferase domain containing 2|tRNA methyltransferase 10 homolog A (S. cerevisiae)" SPOUT methyltranferase domain containing 1294 2004-03-04 2012-06-28 2015-09-25 2015-09-25 93587 ENSG00000145331 OTTHUMG00000131025 uc003hva.5 BC028373 NM_152292 CCDS3650 Q8TBZ6 "24204302|23042678" MGI:1920421 RGD:1594565 616013 394606 +HGNC:26454 TRMT10B tRNA methyltransferase 10B protein-coding gene gene with protein product Approved 9p13.2 09p13.2 "FLJ31455|bA3J10.9" RG9MTD3 "RNA (guanine-9-) methyltransferase domain containing 3|tRNA methyltransferase 10 homolog B (S. cerevisiae)" SPOUT methyltranferase domain containing 1294 2004-03-04 2012-06-28 2015-09-25 2016-10-05 158234 ENSG00000165275 OTTHUMG00000019933 uc004aai.5 BC057774 NM_144964 "CCDS43804|CCDS69598|CCDS69600|CCDS69601" Q6PF06 "14702039|23042678" MGI:1917184 RGD:1310735 +HGNC:26022 TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding gene gene with protein product Approved 3q12.3 03q12.3 "FLJ20432|MRPP1" mitochondrial RNase P subunit 1 RG9MTD1 "RNA (guanine-9-) methyltransferase domain containing 1|tRNA methyltransferase 10 homolog C (S. cerevisiae)" SPOUT methyltranferase domain containing 1294 2004-03-04 2012-06-28 2015-09-25 2015-09-25 54931 ENSG00000174173 OTTHUMG00000159114 uc003duz.5 AK000439 NM_017819 CCDS43122 Q7L0Y3 18984158 MGI:1196261 RGD:1306333 615423 +HGNC:21080 TRMT11 tRNA methyltransferase 11 homolog protein-coding gene gene with protein product Approved 6q22.32 06q22.32 "MDS024|dJ187J11.2|TRM11|TRMT11-1" C6orf75 "chromosome 6 open reading frame 75|tRNA methyltransferase 11 homolog (S. cerevisiae)" 2003-11-26 2006-11-28 2015-10-02 2016-10-05 60487 ENSG00000066651 OTTHUMG00000015515 uc003qam.4 AF182423 NM_021820 CCDS35496 Q7Z4G4 MGI:1920931 RGD:727798 TRMT11 +HGNC:26091 TRMT12 tRNA methyltransferase 12 homolog protein-coding gene gene with protein product Approved 8q24.13 08q24.13 "FLJ20772|Trm12|TYW2" tRNA-yW synthesizing protein 2 "tRNA methyltranferase 12 homolog (S. cerevisiae)|tRNA methyltransferase 12 homolog (S. cerevisiae)" 2005-09-08 2016-05-04 2016-05-04 55039 ENSG00000183665 OTTHUMG00000165022 uc003yra.5 AF313041 NM_017956 CCDS6349 Q53H54 "16005430|17150819" MGI:1915510 RGD:1307127 TRMT12 611244 +HGNC:25502 TRMT13 tRNA methyltransferase 13 homolog protein-coding gene gene with protein product Approved 1p21.2 01p21.2 "FLJ10287|FLJ11219" CCDC76 "coiled-coil domain containing 76|tRNA methyltransferase 13 homolog (S. cerevisiae)" 2006-02-15 2012-06-07 2016-03-31 2016-03-31 54482 ENSG00000122435 OTTHUMG00000010841 uc001dsv.4 BC075811 NM_019083 CCDS765 Q9NUP7 11799066 MGI:1925219 RGD:1565211 +HGNC:26653 TRMT44 tRNA methyltransferase 44 homolog (S. cerevisiae) protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "FLJ35725|TRM44" tRNA methyltransferase 44 homolog (S. cerevisiae) "C4orf23|METTL19" "chromosome 4 open reading frame 23|methyltransferase like 19" Methyltransferase like 963 2006-05-22 2012-06-12 2012-06-12 2016-04-25 152992 ENSG00000155275 OTTHUMG00000160935 uc003glg.3 AK093044 NM_152544 CCDS3402 Q8IYL2 21658913 MGI:1926140 RGD:1308380 TRMT44 614309 +HGNC:23790 TRMT61A tRNA methyltransferase 61A protein-coding gene gene with protein product Approved 14q32 14q32 "FLJ40452|GCD14|Gcd14p|hTRM61" C14orf172 "chromosome 14 open reading frame 172|tRNA methyltransferase 61 homolog A (S. cerevisiae)" 2004-06-11 2009-01-09 2014-11-17 2015-08-26 115708 ENSG00000166166 OTTHUMG00000171762 uc001yng.4 AK097771 NM_152307 CCDS41994 Q96FX7 16043508 MGI:2443487 RGD:9330187 TRMT61A +HGNC:26070 TRMT61B tRNA methyltransferase 61B protein-coding gene gene with protein product Approved 2p23.2 02p23.2 FLJ20628 tRNA methyltransferase 61 homolog B (S. cerevisiae) 2009-01-09 2014-11-17 2014-11-19 55006 ENSG00000171103 OTTHUMG00000128433 uc002rmm.5 BC010365 NM_017910 CCDS1768 Q9BVS5 "11230166|23097428" TRMT61B +HGNC:26940 TRMT112 tRNA methyltransferase 11-2 homolog (S. cerevisiae) protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "HSPC152|HSPC170|TRM112|TRMT11-2|hTrm112" 2009-06-15 2015-10-02 51504 ENSG00000173113 OTTHUMG00000167848 uc001nzt.5 AF110774 NM_016404 "CCDS8068|CCDS66113|CCDS73312" Q9UI30 11042152 MGI:1914924 RGD:1309710 TRMT112 +HGNC:44020 TRMT112P1 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 2012-05-28 2012-05-28 100288861 ENSG00000250272 OTTHUMG00000161139 NG_027524 PGOHUM00000246044 +HGNC:44021 TRMT112P2 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 2 pseudogene pseudogene Approved 5q14.1 05q14.1 2012-05-28 2014-11-19 106479033 ENSG00000249778 OTTHUMG00000162546 NG_044366 PGOHUM00000235289 +HGNC:44022 TRMT112P3 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 3 pseudogene pseudogene Approved 17q23.2 17q23.2 2012-05-28 2014-11-19 729667 ENSG00000265262 OTTHUMG00000179101 NG_027522 PGOHUM00000237139 +HGNC:44023 TRMT112P4 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 4 pseudogene pseudogene Approved 9q31.1 09q31.1 2012-05-28 2014-11-19 100288173 ENSG00000236763 OTTHUMG00000020375 NG_027523 PGOHUM00000236287 +HGNC:44024 TRMT112P5 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 5 pseudogene pseudogene Approved 3q23 03q23 2012-05-28 2014-11-19 106480784 ENSG00000250161 OTTHUMG00000159950 NG_044040 PGOHUM00000237790 +HGNC:44025 TRMT112P6 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 6 pseudogene pseudogene Approved 2p23.3 02p23.3 2012-05-28 2014-11-19 391358 ENSG00000268412 OTTHUMG00000187085 NG_027521 +HGNC:44026 TRMT112P7 tRNA methyltransferase 11-2 homolog (S. cerevisiae) pseudogene 7 pseudogene pseudogene Approved 8q11.23 08q11.23 2012-05-28 2014-11-19 100287567 ENSG00000270275 OTTHUMG00000184845 NG_027525 PGOHUM00000249345 +HGNC:25481 TRMU tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding gene gene with protein product Approved 22q13.31 22q13.31 "FLJ10140|MTO2" TRMT tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2004-03-08 2005-08-11 2005-08-11 2016-10-05 55687 ENSG00000100416 OTTHUMG00000150424 uc003bhp.4 AY062123 NM_018006 "CCDS14075|CCDS63510" O75648 14746906 MGI:1919276 RGD:1311229 TRMU 610230 120293 2.1.1.61 +HGNC:34887 TRN-ATT1-1 transfer RNA-Asn (ATT) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN26 transfer RNA asparagine 26 (anticodon AUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189320 HG983627 +HGNC:50812 TRN-ATT1-2 transfer RNA-Asn (ATT) 1-2 non-coding RNA RNA, transfer Approved 1 not on reference assembly 01 not on reference assembly Cytoplasmic transfer RNAs 842 2014-07-07 2014-07-11 103581030 HG983628 +HGNC:34688 TRN-GTT1-1 transfer RNA-Asn (GTT) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN14 transfer RNA asparagine 14 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189126 HG983629 +HGNC:12324 TRN-GTT2-1 transfer RNA-Asn (GTT) 2-1 non-coding RNA RNA, transfer Approved 1p36.1 01p36.1 "RNN|TRN|TRN1|TRNAN1" "tRNA asparagine|tRNA asparagine 1 (anticodon GUU)|transfer RNA asparagine 1 (anticodon GUU)" Cytoplasmic transfer RNAs 842 1989-06-30 2014-06-19 2014-06-19 2014-06-19 7214 HG983630 189880 +HGNC:34971 TRN-GTT2-2 transfer RNA-Asn (GTT) 2-2 non-coding RNA RNA, transfer Approved 1 01 TRNAN32 transfer RNA asparagine 32 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189402 HG983631 +HGNC:34643 TRN-GTT2-3 transfer RNA-Asn (GTT) 2-3 non-coding RNA RNA, transfer Approved 10 10 TRNAN11 transfer RNA asparagine 11 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189083 HG983632 +HGNC:34595 TRN-GTT2-4 transfer RNA-Asn (GTT) 2-4 non-coding RNA RNA, transfer Approved 13 13 TRNAN7 transfer RNA asparagine 7 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189036 HG983633 +HGNC:34738 TRN-GTT2-5 transfer RNA-Asn (GTT) 2-5 non-coding RNA RNA, transfer Approved 17 17 TRNAN17 transfer RNA asparagine 17 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189176 HG983634 +HGNC:34758 TRN-GTT2-6 transfer RNA-Asn (GTT) 2-6 non-coding RNA RNA, transfer Approved 19 19 TRNAN20 transfer RNA asparagine 20 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189195 HG983635 +HGNC:34890 TRN-GTT3-1 transfer RNA-Asn (GTT) 3-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN27 transfer RNA asparagine 27 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189323 HG983636 +HGNC:34689 TRN-GTT3-2 transfer RNA-Asn (GTT) 3-2 non-coding RNA RNA, transfer Approved 1 01 TRNAN15 transfer RNA asparagine 15 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189127 HG983637 +HGNC:33197 TRN-GTT4-1 transfer RNA-Asn (GTT) 4-1 non-coding RNA RNA, transfer Approved 1p36.13 01p36.13 "TRN2|TRNAN2" transfer RNA asparagine 2 (anticodon GUU) Cytoplasmic transfer RNAs 842 2007-01-11 2014-06-19 2014-06-19 2014-06-19 791226 HG983638 6234206 +HGNC:38582 TRN-GTT5-1 transfer RNA-Asn (GTT) 5-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN37 transfer RNA asparagine 37 (anticodon GUU) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 101822346 HG983639 +HGNC:33198 TRN-GTT6-1 transfer RNA-Asn (GTT) 6-1 non-coding RNA RNA, transfer Approved 1q21.1 01q21.1 "TRN3|TRNAN3" transfer RNA asparagine 3 (anticodon GUU) Cytoplasmic transfer RNAs 842 2007-01-11 2014-06-19 2014-06-19 2014-06-19 791227 HG983640 6234206 +HGNC:34562 TRN-GTT7-1 transfer RNA-Asn (GTT) 7-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN5 transfer RNA asparagine 5 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189005 HG983641 +HGNC:34618 TRN-GTT8-1 transfer RNA-Asn (GTT) 8-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN8 transfer RNA asparagine 8 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189059 HG983642 +HGNC:34870 TRN-GTT9-1 transfer RNA-Asn (GTT) 9-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN25 transfer RNA asparagine 25 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189304 HG983643 +HGNC:34756 TRN-GTT9-2 transfer RNA-Asn (GTT) 9-2 non-coding RNA RNA, transfer Approved 1 01 TRNAN19 transfer RNA asparagine 19 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189193 HG983644 +HGNC:35092 TRN-GTT10-1 transfer RNA-Asn (GTT) 10-1 non-coding RNA RNA, transfer Approved 1q21.1 01q21.1 "TRNAN35P|TRNAN35" "transfer RNA asparagine 35 (anticodon GUU) pseudogene|transfer RNA asparagine 35 (anticodon GUU)" Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189517 HG983645 NG_008575 +HGNC:34669 TRN-GTT11-1 transfer RNA-Asn (GTT) 11-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN13 transfer RNA asparagine 13 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189108 HG983646 +HGNC:34820 TRN-GTT11-2 transfer RNA-Asn (GTT) 11-2 non-coding RNA RNA, transfer Approved 1 01 TRNAN22 transfer RNA asparagine 22 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189257 HG983647 +HGNC:34924 TRN-GTT12-1 transfer RNA-Asn (GTT) 12-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN29 transfer RNA asparagine 29 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189356 HG983648 +HGNC:34746 TRN-GTT13-1 transfer RNA-Asn (GTT) 13-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN18 transfer RNA asparagine 18 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189183 HG983649 +HGNC:34553 TRN-GTT14-1 transfer RNA-Asn (GTT) 14-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN4 transfer RNA asparagine 4 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100188996 HG983650 +HGNC:34796 TRN-GTT15-1 transfer RNA-Asn (GTT) 15-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN21 transfer RNA asparagine 21 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189233 HG983651 +HGNC:34628 TRN-GTT16-1 transfer RNA-Asn (GTT) 16-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN9 transfer RNA asparagine 9 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189069 HG983652 +HGNC:34834 TRN-GTT16-2 transfer RNA-Asn (GTT) 16-2 non-coding RNA RNA, transfer Approved 1 01 TRNAN24 transfer RNA asparagine 24 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189271 HG983653 +HGNC:34639 TRN-GTT16-3 transfer RNA-Asn (GTT) 16-3 non-coding RNA RNA, transfer Approved 1 01 TRNAN10 transfer RNA asparagine 10 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189079 HG983654 +HGNC:34727 TRN-GTT16-4 transfer RNA-Asn (GTT) 16-4 non-coding RNA RNA, transfer Approved 1 01 TRNAN16 transfer RNA asparagine 16 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189165 HG983655 +HGNC:34906 TRN-GTT16-5 transfer RNA-Asn (GTT) 16-5 non-coding RNA RNA, transfer Approved 1 01 TRNAN28 transfer RNA asparagine 28 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189338 HG983656 +HGNC:34657 TRN-GTT17-1 transfer RNA-Asn (GTT) 17-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN12 transfer RNA asparagine 12 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189096 HG983657 +HGNC:50799 TRN-GTT18-1 transfer RNA-Asn (GTT) 18-1 non-coding RNA RNA, transfer Approved 1p36.13 01p36.13 Cytoplasmic transfer RNAs 842 2014-06-14 2014-06-19 2014-06-20 103456509 HG983658 +HGNC:34949 TRN-GTT19-1 transfer RNA-Asn (GTT) 19-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN30 transfer RNA asparagine 30 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189381 HG983659 +HGNC:34829 TRN-GTT20-1 transfer RNA-Asn (GTT) 20-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN23 transfer RNA asparagine 23 (anticodon GUU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189266 HG983660 +HGNC:38584 TRN-GTT21-1 transfer RNA-Asn (GTT) 21-1 non-coding RNA RNA, transfer Approved 1 01 TRNAN38 transfer RNA asparagine 38 (anticodon GUU) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 100873961 HG983661 +HGNC:35111 TRN-GTT22-1 transfer RNA-Asn (GTT) 22-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAN36P transfer RNA asparagine 36 (anticodon GUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189534 HG983662 NG_008592 +HGNC:35064 TRN-GTT23-1 transfer RNA-Asn (GTT) 23-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAN34P transfer RNA asparagine 34 (anticodon GUU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189490 HG983663 NG_008548 +HGNC:34804 TRNAC17 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:12267 TRNAE2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:12272 TRNAG1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34709 TRNAG14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34743 TRNAI10 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34837 TRNAI14 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34872 TRNAI16 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34899 TRNAI19 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:35002 TRNAI27 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34636 TRNAK10 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34843 TRNAK25 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34844 TRNAL25 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:12317 TRNAL47P entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-20 +HGNC:34586 TRNAN6 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34968 TRNAN31 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34972 TRNAN33 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34565 TRNAQ4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-14 +HGNC:34672 TRNAR13 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-02 +HGNC:30813 TRNAU1AP tRNA selenocysteine 1 associated protein 1 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "SECP43|FLJ20503" TRSPAP1 tRNA selenocysteine associated protein 1 RNA binding motif containing 725 2005-11-28 2008-09-05 2008-09-05 2014-11-19 54952 ENSG00000180098 OTTHUMG00000003653 uc001bqi.4 NM_017846 CCDS324 Q9NX07 "10606267|16230358" MGI:1919037 RGD:619995 TRNAU1AP +HGNC:12356 TRNAVP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-19 +HGNC:12357 TRNAVP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-19 +HGNC:12358 TRNAVP3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-19 +HGNC:12359 TRNAVP4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-19 +HGNC:12325 TRNL entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-06-19 +HGNC:34348 TRNP1 TMF1-regulated nuclear protein 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 LOC388610 C1orf225 chromosome 1 open reading frame 225 2008-09-16 2009-02-19 2009-02-19 2012-10-03 388610 ENSG00000253368 OTTHUMG00000004277 uc001bnj.5 "AI366714|AL356390|BC069216|CH471059" NM_001013642 CCDS41289 Q6NT89 12477932 MGI:1916789 RGD:1582917 TRNP1 616824 +HGNC:17341 TRNT1 tRNA nucleotidyl transferase 1 protein-coding gene gene with protein product Approved 3p26.2 03p26.2 "MtCCA|CGI-47|CCA1" "ATP(CTP):tRNA nucleotidyltransferase|CCA-adding enzyme" "tRNA nucleotidyl transferase, CCA-adding, 1|tRNA CCA nucleotidyl transferase 1" 2002-05-30 2016-05-16 2016-10-05 51095 ENSG00000072756 OTTHUMG00000090259 uc003bpp.5 AF151805 XR_001740168 "CCDS2561|CCDS77691" Q96Q11 "10810093|11504732" MGI:1917297 RGD:1308857 TRNT1 612907 413615 2.7.7.25 +HGNC:12326 TRO trophinin protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "MAGE-D3|KIAA1114|MAGED3" MAGE family 1136 1997-10-30 2016-10-05 7216 ENSG00000067445 OTTHUMG00000021640 uc004dtq.6 U04811 NM_016157 "CCDS43958|CCDS43959|CCDS59527|CCDS59528|CCDS59529" Q12816 "9533028|11454705" MGI:1928994 RGD:6488256 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TRO TRO 300132 +HGNC:12327 TROAP trophinin associated protein protein-coding gene gene with protein product Approved 12q13.12 12q13.12 TASTIN tastin 2000-04-13 2012-10-17 2014-11-18 10024 ENSG00000135451 OTTHUMG00000169486 uc001rtx.5 U04810 NM_005480 "CCDS8784|CCDS41779|CCDS61117" Q12815 7758945 MGI:1925983 RGD:1306870 TROAP 603872 +HGNC:11313 TROVE2 TROVE domain family member 2 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 Ro60 SSA2 "Sjogren syndrome antigen A2 (60kDa, ribonucleoprotein autoantigen SS-A/Ro)|TROVE domain family, member 2" 1994-06-17 2005-06-14 2015-11-18 2016-10-05 6738 ENSG00000116747 OTTHUMG00000035675 uc001gsv.3 BC036658 NM_004600 "CCDS1379|CCDS41449|CCDS41450|CCDS53451" P10155 8188321 MGI:106652 RGD:1305083 TROVE2 600063 +HGNC:34579 TRP-AGG1-1 transfer RNA-Pro (AGG) 1-1 non-coding RNA RNA, transfer Approved 16 16 TRNAP5 transfer RNA proline 5 (anticodon AGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189020 HG983977 +HGNC:34578 TRP-AGG2-1 transfer RNA-Pro (AGG) 2-1 non-coding RNA RNA, transfer Approved 1 01 TRNAP4 transfer RNA proline 4 (anticodon AGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189019 HG983978 +HGNC:34786 TRP-AGG2-2 transfer RNA-Pro (AGG) 2-2 non-coding RNA RNA, transfer Approved 6 06 "TRNAP13|TRP-AGG2-7" "transfer RNA proline 13 (anticodon AGG)|transfer RNA-Pro (AGG) 2-7" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189223 HG983984 +HGNC:34840 TRP-AGG2-3 transfer RNA-Pro (AGG) 2-3 non-coding RNA RNA, transfer Approved 7 07 "TRNAP15|TRP-AGG2-8" "transfer RNA proline 15 (anticodon AGG)|transfer RNA-Pro (AGG) 2-8" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189276 HG983985 +HGNC:34631 TRP-AGG2-4 transfer RNA-Pro (AGG) 2-4 non-coding RNA RNA, transfer Approved 11 11 "TRNAP6|TRP-AGG2-2" "transfer RNA proline 6 (anticodon AGG)|transfer RNA-Pro (AGG) 2-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189072 HG983979 +HGNC:12330 TRP-AGG2-5 transfer RNA-Pro (AGG) 2-5 non-coding RNA RNA, transfer Approved 14q11.2 14q11.2 "TRNP1|TRP1|TRNAP1|TRP-AGG2-3" "tRNA proline 1|tRNA proline 1 (anticodon AGG)|transfer RNA proline 1 (anticodon AGG)|transfer RNA-Pro (AGG) 2-3" Cytoplasmic transfer RNAs 842 1989-06-30 2016-02-15 2016-02-15 2016-02-15 7217 HG983980 3557125 189930 +HGNC:12331 TRP-AGG2-6 transfer RNA-Pro (AGG) 2-6 non-coding RNA RNA, transfer Approved 14q11.2 14q11.2 "TRNP1|TRP2|TRNAP2|TRP-AGG2-4" "tRNA proline 2|transfer RNA proline 2 (anticodon UGG)|transfer RNA proline 2 (anticodon AGG)|transfer RNA-Pro (AGG) 2-4" Cytoplasmic transfer RNAs 842 1989-06-30 2016-02-15 2016-02-15 2016-02-15 7218 HG983981 3557125 189931 +HGNC:34698 TRP-AGG2-7 transfer RNA-Pro (AGG) 2-7 non-coding RNA RNA, transfer Approved 16 16 "TRNAP9|TRP-AGG2-5" "transfer RNA proline 9 (anticodon AGG)|transfer RNA-Pro (AGG) 2-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189136 HG983982 +HGNC:34862 TRP-AGG2-8 transfer RNA-Pro (AGG) 2-8 non-coding RNA RNA, transfer Approved 16 16 "TRNAP18|TRP-AGG2-6" "transfer RNA proline 18 (anticodon AGG)|transfer RNA-Pro (AGG) 2-6" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189296 HG983983 +HGNC:34929 TRP-AGG3-1 transfer RNA-Pro (AGG) 3-1 non-coding RNA RNA, transfer Approved 16 16 TRNAP20 transfer RNA proline 20 (anticodon AGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189361 HG983986 +HGNC:35107 TRP-AGG4-1 transfer RNA-Pro (AGG) 4-1 non-coding RNA RNA, transfer Approved 2p11.2 02p11.2 TRNAP28P transfer RNA proline 28 (anticodon AGG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189530 HG983987 NG_008588 +HGNC:35055 TRP-AGG5-1 transfer RNA-Pro (AGG) 5-1 non-coding RNA RNA, transfer Approved 2p12 02p12 TRNAP25P transfer RNA proline 25 (anticodon AGG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189482 HG983988 NG_008540 +HGNC:35049 TRP-AGG6-1 transfer RNA-Pro (AGG) 6-1 non-coding RNA RNA, transfer Approved 16p13.3 16p13.3 TRNAP24P transfer RNA proline 24 (anticodon AGG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189476 HG983989 NG_008534 +HGNC:34774 TRP-CGG1-1 transfer RNA-Pro (CGG) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAP11 transfer RNA proline 11 (anticodon CGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189211 HG983990 +HGNC:34784 TRP-CGG1-2 transfer RNA-Pro (CGG) 1-2 non-coding RNA RNA, transfer Approved 16 16 TRNAP12 transfer RNA proline 12 (anticodon CGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189221 HG983991 +HGNC:34686 TRP-CGG1-3 transfer RNA-Pro (CGG) 1-3 non-coding RNA RNA, transfer Approved 17 17 TRNAP8 transfer RNA proline 8 (anticodon CGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189124 HG983992 +HGNC:34734 TRP-CGG2-1 transfer RNA-Pro (CGG) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAP10 transfer RNA proline 10 (anticodon CGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189172 HG983993 +HGNC:35026 TRP-GGG1-1 transfer RNA-Pro (GGG) 1-1 non-coding RNA RNA, transfer Approved 10p12.2 10p12.2 TRNAP22P transfer RNA proline 22 (anticodon GGG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189455 HG983994 NG_008512 +HGNC:34852 TRP-TGG1-1 transfer RNA-Pro (TGG) 1-1 non-coding RNA RNA, transfer Approved 14 14 TRNAP17 transfer RNA proline 17 (anticodon UGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189286 HG983995 +HGNC:34787 TRP-TGG2-1 transfer RNA-Pro (TGG) 2-1 non-coding RNA RNA, transfer Approved 11 11 TRNAP14 transfer RNA proline 14 (anticodon UGG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189224 HG983996 +HGNC:12332 TRP-TGG3-1 transfer RNA-Pro (TGG) 3-1 non-coding RNA RNA, transfer Approved 5q35.3 05q35.3 "TRP3|TRNAP3|TRP-TGG3-5" "tRNA proline (UGG) 3|transfer RNA proline 3 (anticodon UGG)|transfer RNA-Pro (TGG) 3-5" Cytoplasmic transfer RNAs 842 1990-02-24 2016-02-15 2016-02-15 2016-02-15 7219 HG984001 "2613239|2676726" 189912 +HGNC:34648 TRP-TGG3-2 transfer RNA-Pro (TGG) 3-2 non-coding RNA RNA, transfer Approved 14 14 "TRNAP7|TRP-TGG3-1" "transfer RNA proline 7 (anticodon UGG)|transfer RNA-Pro (TGG) 3-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189088 HG983997 +HGNC:34903 TRP-TGG3-3 transfer RNA-Pro (TGG) 3-3 non-coding RNA RNA, transfer Approved 16 16 "TRNAP19|TRP-TGG3-2" "transfer RNA proline 19 (anticodon UGG)|transfer RNA-Pro (TGG) 3-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189335 HG983998 +HGNC:34956 TRP-TGG3-4 transfer RNA-Pro (TGG) 3-4 non-coding RNA RNA, transfer Approved 16 16 "TRNAP21|TRP-TGG3-3" "transfer RNA proline 21 (anticodon UGG)|transfer RNA-Pro (TGG) 3-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189388 HG983999 +HGNC:34847 TRP-TGG3-5 transfer RNA-Pro (TGG) 3-5 non-coding RNA RNA, transfer Approved 16 16 "TRNAP16|TRP-TGG3-4" "transfer RNA proline 16 (anticodon UGG)|transfer RNA-Pro (TGG) 3-4" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189281 HG984000 +HGNC:35056 TRP-TGG4-1 transfer RNA-Pro (TGG) 4-1 non-coding RNA RNA, transfer Approved 16p13.3 16p13.3 TRNAP26P transfer RNA proline 26 (anticodon UGG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189483 HG984002 NG_008541 +HGNC:35090 TRP-TGG5-1 transfer RNA-Pro (TGG) 5-1 non-coding RNA RNA, transfer Approved 1q32.1 01q32.1 TRNAP27P transfer RNA proline 27 (anticodon UGG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189515 HG984003 NG_008573 +HGNC:497 TRPA1 transient receptor potential cation channel subfamily A member 1 protein-coding gene gene with protein product Approved 8q21.11 08q21.11 ANKTM1 "ankyrin-like with transmembrane domains 1|transient receptor potential cation channel, subfamily A, member 1" "Transient receptor potential cation channels|Ankyrin repeat domain containing" "249|403" 1999-01-15 2003-11-20 2016-01-28 2016-10-05 8989 ENSG00000104321 OTTHUMG00000164516 uc003xza.4 Y10601 NM_007332 CCDS34908 O75762 16382100 MGI:3522699 RGD:1303284 TRPA1 604775 394596 objectId:485 +HGNC:12333 TRPC1 transient receptor potential cation channel subfamily C member 1 protein-coding gene gene with protein product Approved 3q23 03q23 HTRP-1 transient receptor potential cation channel, subfamily C, member 1 Transient receptor potential cation channels 249 1995-09-01 2016-01-28 2016-01-28 7220 ENSG00000144935 OTTHUMG00000159301 uc003evb.4 X89066 NM_003304 "CCDS3126|CCDS58856" P48995 "7568191|16382100" MGI:109528 RGD:619783 TRPC1 602343 objectId:486 +HGNC:12334 TRPC2 transient receptor potential cation channel subfamily C member 2, pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 "transient receptor potential cation channel, subfamily C, member 2|transient receptor potential cation channel, subfamily C, member 2, pseudogene" Transient receptor potential cation channels 249 1995-09-01 2016-01-28 2016-01-28 7221 ENSG00000182048 OTTHUMG00000011712 X89067 NR_002720 "7568191|16382100|17217050" MGI:109527 objectId:487 +HGNC:12335 TRPC3 transient receptor potential cation channel subfamily C member 3 protein-coding gene gene with protein product Approved 4q27 04q27 transient receptor potential cation channel, subfamily C, member 3 Transient receptor potential cation channels 249 1995-09-01 2016-01-28 2016-01-28 7222 ENSG00000138741 OTTHUMG00000133069 uc003ief.3 Y13758 NM_003305 "CCDS3725|CCDS47130" Q13507 "8646775|16382100" MGI:109526 RGD:61973 TRPC3 602345 460869 objectId:488 +HGNC:12336 TRPC4 transient receptor potential cation channel subfamily C member 4 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 "HTRP4|TRP4" transient receptor potential cation channel, subfamily C, member 4 "Transient receptor potential cation channels|Ankyrin repeat domain containing" "249|403" 1996-03-12 2016-01-28 2016-01-28 7223 ENSG00000133107 OTTHUMG00000016752 uc001uws.4 U40983 NM_003306 "CCDS9365|CCDS45035|CCDS45036|CCDS45038|CCDS45039|CCDS45037" Q9UBN4 "8646775|16382100" MGI:109525 RGD:621276 TRPC4 603651 objectId:489 +HGNC:16181 TRPC4AP transient receptor potential cation channel subfamily C member 4 associated protein protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "DKFZP727M231|DKFZp586C1223|dJ756N5.2|TRRP4AP|PPP1R158" protein phosphatase 1, regulatory subunit 158 C20orf188 "chromosome 20 open reading frame 188|transient receptor potential cation channel, subfamily C, member 4 associated protein" Protein phosphatase 1 regulatory subunits 694 2001-07-17 2003-10-08 2016-01-28 2016-10-05 26133 ENSG00000100991 OTTHUMG00000032319 uc002xbk.4 AF055022 NM_015638 "CCDS13246|CCDS46591" Q8TEL6 MGI:1930751 RGD:1309914 TRPC4AP 608430 +HGNC:12337 TRPC5 transient receptor potential cation channel subfamily C member 5 protein-coding gene gene with protein product Approved Xq23 Xq23 PPP1R159 protein phosphatase 1, regulatory subunit 159 transient receptor potential cation channel, subfamily C, member 5 "Transient receptor potential cation channels|Protein phosphatase 1 regulatory subunits" "249|694" 1996-03-12 2016-01-28 2016-01-28 7224 ENSG00000072315 OTTHUMG00000022212 uc004epl.2 AF054568 NM_012471 CCDS14561 Q9UL62 "10493832|16382100" MGI:109524 RGD:619787 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TRPC5 TRPC5 300334 objectId:490 +HGNC:40593 TRPC5OS TRPC5 opposite strand other unknown Approved Xq23 Xq23 TRPC5-AS1 TRPC5 antisense RNA 1 (non-protein coding) 2011-07-29 2012-06-25 2012-06-25 2014-11-19 100329135 ENSG00000204025 OTTHUMG00000022211 uc065atp.1 NM_001195576 CCDS83485 A6NMA1 MGI:3641805 RGD:6503255 +HGNC:12338 TRPC6 transient receptor potential cation channel subfamily C member 6 protein-coding gene gene with protein product Approved 11q22.1 11q22.1 TRP6 FSGS2 "focal segmental glomerulosclerosis 2|transient receptor potential cation channel, subfamily C, member 6" Transient receptor potential cation channels 249 1998-08-05 2016-01-28 2016-01-28 7225 ENSG00000137672 OTTHUMG00000167483 uc001pgk.4 AJ006276 NM_004621 CCDS8311 Q9Y210 "9925922|16382100|15879175" MGI:109523 RGD:619788 TRPC6 603652 120298 objectId:491 +HGNC:23270 TRPC6P transient receptor potential cation channel subfamily C member 6, pseudogene pseudogene pseudogene Approved Xq28 and Yq12 Xq28 and Yq12 TRPC6L transient receptor potential cation channel, subfamily C, member 6 pseudogene Pseudoautosomal region 2 716 2006-09-22 2016-01-28 2016-01-28 644218 ENSG00000223484 OTTHUMG00000022681 NG_005687 PGOHUM00000241624 +HGNC:20754 TRPC7 transient receptor potential cation channel subfamily C member 7 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 transient receptor potential cation channel, subfamily C, member 7 Transient receptor potential cation channels 249 2003-03-31 2016-01-28 2016-04-25 57113 ENSG00000069018 OTTHUMG00000189265 uc003lbn.3 AJ272034 NM_020389 "CCDS47267|CCDS54905|CCDS54906" Q9HCX4 "11805119|16382100" MGI:1349470 RGD:628820 TRPC7 objectId:492 +HGNC:40936 TRPC7-AS1 TRPC7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q31.1 05q31.1 TRPC7 antisense RNA 1 (non-protein coding) 2012-01-23 2012-08-15 2014-11-19 100874024 ENSG00000248211 OTTHUMG00000162034 uc063hgv.1 +HGNC:40937 TRPC7-AS2 TRPC7 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 5q31.1 05q31.1 TRPC7 antisense RNA 2 (non-protein coding) 2012-01-23 2012-08-15 2014-11-19 106478968 ENSG00000250947 OTTHUMG00000162036 uc063hgw.1 NR_133682 +HGNC:7146 TRPM1 transient receptor potential cation channel subfamily M member 1 protein-coding gene gene with protein product Approved 15q13.3 15q13.3 "LTRPC1|CSNB1C" MLSN1 "melastatin 1|transient receptor potential cation channel, subfamily M, member 1" Transient receptor potential cation channels 249 1998-05-26 2002-01-18 2016-01-28 2016-01-28 4308 ENSG00000134160 OTTHUMG00000129267 uc001zfm.4 AF071787 NM_002420 "CCDS10024|CCDS58345|CCDS58346|CCDS58347" Q7Z4N2 "9806836|9537257|16382100" MGI:1330305 RGD:1597140 TRPM1 603576 225280 objectId:493 +HGNC:12339 TRPM2 transient receptor potential cation channel subfamily M member 2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "KNP3|LTRPC2|NUDT9L1|NUDT9H|EREG1" TRPC7 transient receptor potential cation channel, subfamily M, member 2 "Transient receptor potential cation channels|Nudix hydrolase family" "249|667" 1998-03-23 2002-01-18 2016-01-28 2016-01-28 7226 ENSG00000142185 OTTHUMG00000040840 uc002zet.1 AB001535 NM_003307 "CCDS13710|CCDS82681" O94759 "9806837|11385575|16382100" MGI:1351901 RGD:1311889 TRPM2 603749 objectId:494 +HGNC:50758 TRPM2-AS TRPM2 antisense RNA non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 TRPM2-AS1 2014-06-01 2014-06-17 101928607 ENSG00000230061 OTTHUMG00000040845 AK057275 NR_109964 "18957938|24931166" +HGNC:17992 TRPM3 transient receptor potential cation channel subfamily M member 3 protein-coding gene gene with protein product Approved 9q21.12-q21.13 09q21.12-q21.13 "KIAA1616|LTRPC3|GON-2" melastatin 2 transient receptor potential cation channel, subfamily M, member 3 Transient receptor potential cation channels 249 2002-01-11 2016-01-28 2016-10-11 80036 ENSG00000083067 OTTHUMG00000019997 uc004aid.5 AB046836 NM_206945 "CCDS6634|CCDS6635|CCDS6636|CCDS6637|CCDS43835|CCDS65064" Q9HCF6 16382100 MGI:2443101 RGD:1304888 TRPM3 608961 objectId:495 +HGNC:17993 TRPM4 transient receptor potential cation channel subfamily M member 4 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 FLJ20041 transient receptor potential cation channel, subfamily M, member 4 Transient receptor potential cation channels 249 2002-01-11 2016-01-28 2016-01-28 54795 ENSG00000130529 OTTHUMG00000183184 uc002pmw.4 AK000048 NM_017636 "CCDS33073|CCDS56098" Q8TD43 "11535825|16382100" MGI:1915917 RGD:620244 TRPM4 606936 209301 objectId:496 +HGNC:14323 TRPM5 transient receptor potential cation channel subfamily M member 5 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "LTRPC5|MTR1" transient receptor potential cation channel, subfamily M, member 5 Transient receptor potential cation channels 249 2002-01-11 2016-01-28 2016-01-28 29850 ENSG00000070985 OTTHUMG00000009896 uc001lwm.5 AF177473 NM_014555 CCDS31340 Q9NZQ8 "10607831|16382100" MGI:1861718 RGD:1310620 TRPM5 604600 objectId:497 +HGNC:17995 TRPM6 transient receptor potential cation channel subfamily M member 6 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 "CHAK2|FLJ22628" "HOMG|HSH" "hypomagnesemia, secondary hypocalcemia|transient receptor potential cation channel, subfamily M, member 6" Transient receptor potential cation channels 249 2002-01-11 2016-01-28 2016-01-28 140803 ENSG00000119121 OTTHUMG00000020027 uc004ajl.1 AK026281 NM_017662 "CCDS6647|CCDS55318|CCDS55319" Q9BX84 "10021370|12032570|16382100" MGI:2675603 RGD:1309942 TRPM6 607009 120301 objectId:498 +HGNC:17994 TRPM7 transient receptor potential cation channel subfamily M member 7 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "CHAK1|LTRPC7|TRP-PLIK" transient receptor potential cation channel, subfamily M, member 7 Transient receptor potential cation channels 249 2002-01-11 2016-01-28 2016-10-05 54822 ENSG00000092439 OTTHUMG00000172449 uc001zyt.5 AF346629 NM_017672 "CCDS42035|CCDS73725" Q96QT4 "11161216|11385574|16382100" MGI:1929996 RGD:620053 TRPM7 605692 159298 objectId:499 +HGNC:17961 TRPM8 transient receptor potential cation channel subfamily M member 8 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 transient receptor potential cation channel, subfamily M, member 8 Transient receptor potential cation channels 249 2002-01-11 2016-01-28 2016-10-05 79054 ENSG00000144481 OTTHUMG00000059129 uc002vvh.3 AC005538 NM_024080 CCDS33407 Q7Z2W7 16382100 MGI:2181435 RGD:620762 TRPM8 606678 objectId:500 +HGNC:12340 TRPS1 transcriptional repressor GATA binding 1 protein-coding gene gene with protein product Approved 8q23.3 08q23.3 "LGCR|GC79" trichorhinophalangeal syndrome I "Zinc fingers C2H2-type|GATA zinc finger domain containing" "28|82" 1995-07-06 2016-02-15 2016-02-17 7227 ENSG00000104447 OTTHUMG00000142829 uc003yny.5 AF183810 NM_014112 "CCDS6318|CCDS64957|CCDS83316" Q9UHF7 "8530105|10615131|10647898" MGI:1927616 RGD:1311883 TRPS1 604386 120307 +HGNC:20316 TRPT1 tRNA phosphotransferase 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 MGC11134 tRNA splicing 2' phosphotransferase 1 2003-05-22 2016-10-05 83707 ENSG00000149743 OTTHUMG00000167844 uc001nyo.4 NM_031472 "CCDS31595|CCDS44639|CCDS53652|CCDS53653|CCDS81579" Q86TN4 14504659 MGI:1333115 RGD:1310831 TRPT1 610470 +HGNC:12716 TRPV1 transient receptor potential cation channel subfamily V member 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 VR1 "vanilloid receptor subtype 1|transient receptor potential cation channel, subfamily V, member 1" "Transient receptor potential cation channels|Ankyrin repeat domain containing" "249|403" 1997-12-05 2002-02-01 2016-01-28 2016-01-28 7442 ENSG00000196689 OTTHUMG00000177649 uc010vru.3 AJ272063 NM_018727 CCDS45576 Q8NER1 "9349813|11549313|16382100" MGI:1341787 RGD:628841 TRPV1 602076 objectId:507 +HGNC:18082 TRPV2 transient receptor potential cation channel subfamily V member 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "VRL|VRL-1|VRL1" transient receptor potential cation channel, subfamily V, member 2 "Transient receptor potential cation channels|Ankyrin repeat domain containing" "249|403" 2002-01-29 2016-01-28 2016-01-28 51393 ENSG00000187688 OTTHUMG00000058989 uc002gpy.3 AF129112 NM_016113 CCDS32576 Q9Y5S1 "10201375|16382100" MGI:1341836 RGD:3965 TRPV2 606676 objectId:508 +HGNC:18084 TRPV3 transient receptor potential cation channel subfamily V member 3 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 VRL3 transient receptor potential cation channel, subfamily V, member 3 "Transient receptor potential cation channels|Ankyrin repeat domain containing" "249|403" 2002-07-05 2016-01-28 2016-10-05 162514 ENSG00000167723 OTTHUMG00000090695 uc002fvt.3 AF514998 NM_145068 "CCDS11029|CCDS58500" Q8NET8 "12016205|12077606|16382100" MGI:2181407 RGD:1564531 TRPV3 607066 294456 objectId:509 +HGNC:18083 TRPV4 transient receptor potential cation channel subfamily V member 4 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "OTRPC4|TRP12|VROAC|VRL-2|VR-OAC|CMT2C" osmosensitive transient receptor potential channel 4 transient receptor potential cation channel, subfamily V, member 4 "Transient receptor potential cation channels|Ankyrin repeat domain containing" "249|403" 2002-01-29 2016-01-28 2016-10-12 59341 ENSG00000111199 OTTHUMG00000169277 uc001tpk.3 AF263523 NM_021625 "CCDS9134|CCDS9135|CCDS53827|CCDS53828|CCDS53829" Q9HBA0 "11025659|11081638|16382100|20037587" MGI:1926945 RGD:69337 LRG_372|http://www.lrg-sequence.org/LRG/LRG_372 TRPV4 605427 171081 objectId:510 +HGNC:3145 TRPV5 transient receptor potential cation channel subfamily V member 5 protein-coding gene gene with protein product Approved 7q34 07q34 CaT2 ECAC1 "epithelial calcium channel 1|transient receptor potential cation channel, subfamily V, member 5" "Transient receptor potential cation channels|Ankyrin repeat domain containing" "249|403" 2000-05-05 2002-02-01 2016-01-28 2016-01-28 56302 ENSG00000127412 OTTHUMG00000157157 uc003wby.2 AJ271207 NM_019841 CCDS5875 Q9NQA5 "10944439|10945469|16382100" MGI:2429764 RGD:620636 TRPV5 606679 objectId:511 +HGNC:14006 TRPV6 transient receptor potential cation channel subfamily V member 6 protein-coding gene gene with protein product Approved 7q34 07q34 CaT1 ECAC2 "epithelial calcium channel 2|transient receptor potential cation channel, subfamily V, member 6" "Transient receptor potential cation channels|Ankyrin repeat domain containing" "249|403" 2000-11-24 2002-02-01 2016-01-28 2016-01-28 55503 ENSG00000165125 OTTHUMG00000157158 uc003wbx.5 AJ277909 NM_014274 CCDS5874 Q9H1D0 "11097838|11549322|16382100|16717058" MGI:1927259 RGD:69335 TRPV6 606680 objectId:512 +HGNC:34853 TRQ-CTG1-1 transfer RNA-Gln (CTG) 1-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAQ22|TRQ-CTG1-3" "transfer RNA glutamine 22 (anticodon CUG)|transfer RNA-Gln (CTG) 1-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189287 HG983718 +HGNC:34752 TRQ-CTG1-2 transfer RNA-Gln (CTG) 1-2 non-coding RNA RNA, transfer Approved 6 06 "TRNAQ16|TRQ-CTG1-4" "transfer RNA glutamine 16 (anticodon CUG)|transfer RNA-Gln (CTG) 1-4" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189189 HG983719 +HGNC:34683 TRQ-CTG1-3 transfer RNA-Gln (CTG) 1-3 non-coding RNA RNA, transfer Approved 6 06 "TRNAQ11|TRQ-CTG1-5" "transfer RNA glutamine 11 (anticodon CUG)|transfer RNA-Gln (CTG) 1-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189121 HG983720 +HGNC:34884 TRQ-CTG1-4 transfer RNA-Gln (CTG) 1-4 non-coding RNA RNA, transfer Approved 15 15 "TRNAQ24|TRQ-CTG1-1" "transfer RNA glutamine 24 (anticodon CUG)|transfer RNA-Gln (CTG) 1-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189317 HG983716 +HGNC:12341 TRQ-CTG1-5 transfer RNA-Gln (CTG) 1-5 non-coding RNA RNA, transfer Approved 17p13.1 17p13.1 "TRQ1|TRNAQ1|TRQ-CTG1-2" "tRNA glutamine 1|tRNA glutamine 1 (anticodon CUG)|transfer RNA glutamine 1 (anticodon CUG)|transfer RNA-Gln (CTG) 1-2" Cytoplasmic transfer RNAs 842 1989-06-30 2016-02-15 2016-02-15 2016-02-15 7228 HG983717 189919 +HGNC:34831 TRQ-CTG2-1 transfer RNA-Gln (CTG) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAQ21 transfer RNA glutamine 21 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189268 HG983721 +HGNC:34954 TRQ-CTG3-1 transfer RNA-Gln (CTG) 3-1 non-coding RNA RNA, transfer Approved 1 01 TRNAQ29 transfer RNA glutamine 29 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189386 HG983722 +HGNC:34702 TRQ-CTG3-2 transfer RNA-Gln (CTG) 3-2 non-coding RNA RNA, transfer Approved 1 01 TRNAQ13 transfer RNA glutamine 13 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189140 HG983723 +HGNC:34615 TRQ-CTG4-1 transfer RNA-Gln (CTG) 4-1 non-coding RNA RNA, transfer Approved 1 01 TRNAQ8 transfer RNA glutamine 8 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189056 HG983724 +HGNC:34824 TRQ-CTG4-2 transfer RNA-Gln (CTG) 4-2 non-coding RNA RNA, transfer Approved 1 01 TRNAQ20 transfer RNA glutamine 20 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189261 HG983725 +HGNC:34896 TRQ-CTG5-1 transfer RNA-Gln (CTG) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAQ27 transfer RNA glutamine 27 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189329 HG983726 +HGNC:34777 TRQ-CTG6-1 transfer RNA-Gln (CTG) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAQ17 transfer RNA glutamine 17 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189214 HG983727 +HGNC:34555 TRQ-CTG7-1 transfer RNA-Gln (CTG) 7-1 non-coding RNA RNA, transfer Approved 1 01 TRNAQ3 transfer RNA glutamine 3 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100188998 HG983728 +HGNC:34780 TRQ-CTG8-1 transfer RNA-Gln (CTG) 8-1 non-coding RNA RNA, transfer Approved 1 01 TRNAQ19 transfer RNA glutamine 19 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189217 HG983729 +HGNC:34716 TRQ-CTG8-2 transfer RNA-Gln (CTG) 8-2 non-coding RNA RNA, transfer Approved 1 01 TRNAQ14 transfer RNA glutamine 14 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189154 HG983730 +HGNC:35108 TRQ-CTG9-1 transfer RNA-Gln (CTG) 9-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAQ51P transfer RNA glutamine 51 (anticodon CUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189531 HG983731 NG_008589 +HGNC:34889 TRQ-CTG10-1 transfer RNA-Gln (CTG) 10-1 non-coding RNA RNA, transfer Approved 1 01 TRNAQ26 transfer RNA glutamine 26 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189322 HG983732 +HGNC:35023 TRQ-CTG11-1 transfer RNA-Gln (CTG) 11-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAQ37P transfer RNA glutamine 37 (anticodon CUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189452 HG983733 NG_008508 +HGNC:34957 TRQ-CTG12-1 transfer RNA-Gln (CTG) 12-1 non-coding RNA RNA, transfer Approved 12 12 TRNAQ30 transfer RNA glutamine 30 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189389 HG983734 +HGNC:35115 TRQ-CTG13-1 transfer RNA-Gln (CTG) 13-1 non-coding RNA RNA, transfer Approved 5q33.1 05q33.1 TRNAQ53P transfer RNA glutamine 53 (anticodon CUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189538 HG983735 NG_008596 +HGNC:38574 TRQ-CTG14-1 transfer RNA-Gln (CTG) 14-1 non-coding RNA RNA, transfer Approved 1p36.13 01p36.13 TRNAQ55 transfer RNA glutamine 55 (anticodon CUG) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 100189523 HG983736 NG_008581 +HGNC:34575 TRQ-CTG15-1 transfer RNA-Gln (CTG) 15-1 non-coding RNA RNA, transfer Approved 9 09 TRNAQ6 transfer RNA glutamine 6 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189016 HG983737 +HGNC:35078 TRQ-CTG16-1 transfer RNA-Gln (CTG) 16-1 non-coding RNA RNA, transfer Approved 2q35 02q35 TRNAQ44P transfer RNA glutamine 44 (anticodon CUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189503 HG983738 NG_008561 +HGNC:34868 TRQ-CTG17-1 transfer RNA-Gln (CTG) 17-1 non-coding RNA RNA, transfer Approved 20 20 TRNAQ23 transfer RNA glutamine 23 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189302 HG983739 +HGNC:34919 TRQ-CTG18-1 transfer RNA-Gln (CTG) 18-1 non-coding RNA RNA, transfer Approved 16 16 TRNAQ28 transfer RNA glutamine 28 (anticodon CUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189351 HG983740 +HGNC:12342 TRQ-TTG1-1 transfer RNA-Gln (TTG) 1-1 non-coding RNA RNA, transfer Approved 17q21.32 17q21.32 "TRQ2|TRNAQ2" "tRNA glutamine 2|transfer RNA glutamine 2|transfer RNA glutamine 2 (anticodon UUG)" Cytoplasmic transfer RNAs 842 1992-02-27 2014-06-19 2014-06-19 2014-06-19 7229 HG983741 2041751 189923 +HGNC:34700 TRQ-TTG2-1 transfer RNA-Gln (TTG) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAQ12 transfer RNA glutamine 12 (anticodon UUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189138 HG983742 +HGNC:34888 TRQ-TTG3-1 transfer RNA-Gln (TTG) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAQ25 transfer RNA glutamine 25 (anticodon UUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189321 HG983743 +HGNC:34748 TRQ-TTG3-2 transfer RNA-Gln (TTG) 3-2 non-coding RNA RNA, transfer Approved 6 06 TRNAQ15 transfer RNA glutamine 15 (anticodon UUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189185 HG983744 +HGNC:34633 TRQ-TTG3-3 transfer RNA-Gln (TTG) 3-3 non-coding RNA RNA, transfer Approved 6 06 TRNAQ10 transfer RNA glutamine 10 (anticodon UUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189074 HG983745 +HGNC:34991 TRQ-TTG4-1 transfer RNA-Gln (TTG) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAQ32 transfer RNA glutamine 32 (anticodon UUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189422 HG983746 +HGNC:35046 TRQ-TTG5-1 transfer RNA-Gln (TTG) 5-1 non-coding RNA RNA, transfer Approved 2p21 02p21 TRNAQ39P transfer RNA glutamine 39 (anticodon UUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189473 HG983747 NG_008531 +HGNC:34585 TRQ-TTG6-1 transfer RNA-Gln (TTG) 6-1 non-coding RNA RNA, transfer Approved 4 04 TRNAQ7 transfer RNA glutamine 7 (anticodon UUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189026 HG983748 +HGNC:35014 TRQ-TTG7-1 transfer RNA-Gln (TTG) 7-1 non-coding RNA RNA, transfer Approved 5q14.1 05q14.1 TRNAQ33P transfer RNA glutamine 33 (anticodon UUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189444 HG983749 NG_008500 +HGNC:35080 TRQ-TTG8-1 transfer RNA-Gln (TTG) 8-1 non-coding RNA RNA, transfer Approved 19p13.2 19p13.2 TRNAQ45P transfer RNA glutamine 45 (anticodon UUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189505 HG983750 NG_008563 +HGNC:35084 TRQ-TTG9-1 transfer RNA-Gln (TTG) 9-1 non-coding RNA RNA, transfer Approved 12q23.1 12q23.1 TRNAQ46P transfer RNA glutamine 46 (anticodon UUG) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189509 HG983751 NG_008567 +HGNC:34569 TRQ-TTG10-1 transfer RNA-Gln (TTG) 10-1 non-coding RNA RNA, transfer Approved 6 06 TRNAQ5 transfer RNA glutamine 5 (anticodon UUG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189010 HG983752 +HGNC:34964 TRR-ACG1-1 transfer RNA-Arg (ACG) 1-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAR26|TRR-ACG1-2" "transfer RNA arginine 26 (anticodon ACG)|transfer RNA-Arg (ACG) 1-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189396 HG983595 +HGNC:12344 TRR-ACG1-2 transfer RNA-Arg (ACG) 1-2 non-coding RNA RNA, transfer Approved 6p21.3 06p21.3 "TRR2|TRNAR2|TRR-ACG1-3" "tRNA arginine (ACG) 2|tRNA arginine 2 (anticodon ACG)|transfer RNA arginine 2 (anticodon ACG)|transfer RNA-Arg (ACG) 1-3" Cytoplasmic transfer RNAs 842 1993-04-21 2016-02-15 2016-02-15 2016-02-15 7231 HG983596 1457046 615305 +HGNC:34806 TRR-ACG1-3 transfer RNA-Arg (ACG) 1-3 non-coding RNA RNA, transfer Approved 14 14 "TRNAR21|TRR-ACG1-1" "transfer RNA arginine 21 (anticodon ACG)|transfer RNA-Arg (ACG) 1-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189243 HG983594 +HGNC:34664 TRR-ACG2-1 transfer RNA-Arg (ACG) 2-1 non-coding RNA RNA, transfer Approved 3 03 TRNAR11 transfer RNA arginine 11 (anticodon ACG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189103 HG983597 +HGNC:34729 TRR-ACG2-2 transfer RNA-Arg (ACG) 2-2 non-coding RNA RNA, transfer Approved 6 06 TRNAR17 transfer RNA arginine 17 (anticodon ACG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189167 HG983598 +HGNC:34660 TRR-ACG2-3 transfer RNA-Arg (ACG) 2-3 non-coding RNA RNA, transfer Approved 6 06 TRNAR10 transfer RNA arginine 10 (anticodon ACG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189099 HG983599 +HGNC:34997 TRR-ACG2-4 transfer RNA-Arg (ACG) 2-4 non-coding RNA RNA, transfer Approved 6 06 TRNAR29 transfer RNA arginine 29 (anticodon ACG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189428 HG983600 +HGNC:34933 TRR-CCG1-1 transfer RNA-Arg (CCG) 1-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAR24|TRR-CCG1-2" "transfer RNA arginine 24 (anticodon CCG)|transfer RNA-Arg (CCG) 1-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189365 HG983602 +HGNC:34644 TRR-CCG1-2 transfer RNA-Arg (CCG) 1-2 non-coding RNA RNA, transfer Approved 6 06 "TRNAR9|TRR-CCG1-3" "transfer RNA arginine 9 (anticodon CCG)|transfer RNA-Arg (CCG) 1-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189084 HG983603 +HGNC:34735 TRR-CCG1-3 transfer RNA-Arg (CCG) 1-3 non-coding RNA RNA, transfer Approved 16 16 "TRNAR19|TRR-CCG1-1" "transfer RNA arginine 19 (anticodon CCG)|transfer RNA-Arg (CCG) 1-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189173 HG983601 +HGNC:12346 TRR-CCG2-1 transfer RNA-Arg (CCG) 2-1 non-coding RNA RNA, transfer Approved 17q24.2 17q24.2 "TRR4|TRNAR4" "tRNA arginine (CCG) 4|transfer RNA arginine 4 (anticodon CCG)" Cytoplasmic transfer RNAs 842 1997-04-16 2014-06-19 2014-06-19 2014-06-19 7233 HG983604 +HGNC:34638 TRR-CCT1-1 transfer RNA-Arg (CCT) 1-1 non-coding RNA RNA, transfer Approved 17 17 TRNAR8 transfer RNA arginine 8 (anticodon CCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189078 HG983605 +HGNC:34744 TRR-CCT2-1 transfer RNA-Arg (CCT) 2-1 non-coding RNA RNA, transfer Approved 17 17 TRNAR20 transfer RNA arginine 20 (anticodon CCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189181 HG983606 +HGNC:34730 TRR-CCT3-1 transfer RNA-Arg (CCT) 3-1 non-coding RNA RNA, transfer Approved 16 16 TRNAR18 transfer RNA arginine 18 (anticodon CCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189168 HG983607 +HGNC:34975 TRR-CCT4-1 transfer RNA-Arg (CCT) 4-1 non-coding RNA RNA, transfer Approved 7 07 TRNAR27 transfer RNA arginine 27 (anticodon CCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189406 HG983608 +HGNC:34833 TRR-CCT5-1 transfer RNA-Arg (CCT) 5-1 non-coding RNA RNA, transfer Approved 16 16 TRNAR23 transfer RNA arginine 23 (anticodon CCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189270 HG983609 +HGNC:35096 TRR-CCT6-1 transfer RNA-Arg (CCT) 6-1 non-coding RNA RNA, transfer Approved 1q21.1 01q21.1 TRNAR33P transfer RNA arginine 33 (anticodon CCU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189521 HG983610 +HGNC:35019 TRR-CCT6-2 transfer RNA-Arg (CCT) 6-2 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAR31P transfer RNA arginine 31 (anticodon CCU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-18 100189449 HG983611 NG_008505 +HGNC:35013 TRR-CCT7-1 transfer RNA-Arg (CCT) 7-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAR30P transfer RNA arginine 30 (anticodon CCU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189443 HG983612 NG_008499 +HGNC:35077 TRR-CCT8-1 transfer RNA-Arg (CCT) 8-1 non-coding RNA RNA, transfer Approved 1q21.2 01q21.2 TRNAR32P transfer RNA arginine 32 (anticodon CCU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189502 HG983613 NG_008560 +HGNC:35114 TRR-CCT9-1 transfer RNA-Arg (CCT) 9-1 non-coding RNA RNA, transfer Approved 11q13.1 11q13.1 TRNAR34P transfer RNA arginine 34 (anticodon CCU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189537 HG983614 NG_008595 +HGNC:34827 TRR-TCG1-1 transfer RNA-Arg (TCG) 1-1 non-coding RNA RNA, transfer Approved 15 15 TRNAR22 transfer RNA arginine 22 (anticodon UCG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189264 HG983615 +HGNC:34979 TRR-TCG2-1 transfer RNA-Arg (TCG) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAR28 transfer RNA arginine 28 (anticodon UCG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189410 HG983616 +HGNC:34939 TRR-TCG3-1 transfer RNA-Arg (TCG) 3-1 non-coding RNA RNA, transfer Approved 17 17 TRNAR25 transfer RNA arginine 25 (anticodon UCG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189371 HG983617 +HGNC:12345 TRR-TCG4-1 transfer RNA-Arg (TCG) 4-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 "TRR3|TRNAR3" "tRNA arginine (UCG) 3|tRNA arginine 3 (anticodon UCG)|transfer RNA arginine 3 (anticodon UCG)" Cytoplasmic transfer RNAs 842 1995-05-08 2014-06-19 2014-06-19 2014-06-19 7232 HG983618 8661117 601432 +HGNC:34593 TRR-TCG5-1 transfer RNA-Arg (TCG) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAR7 transfer RNA arginine 7 (anticodon UCG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189034 HG983619 +HGNC:34584 TRR-TCG6-1 transfer RNA-Arg (TCG) 6-1 non-coding RNA RNA, transfer Approved 9 09 TRNAR6 transfer RNA arginine 6 (anticodon UCG) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189025 HG983620 +HGNC:34695 TRR-TCT1-1 transfer RNA-Arg (TCT) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAR15 transfer RNA arginine 15 (anticodon UCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189133 HG983621 +HGNC:12343 TRR-TCT2-1 transfer RNA-Arg (TCT) 2-1 non-coding RNA RNA, transfer Approved 17p13.1 17p13.1 "TRR1|TRNAR1" "tRNA arginine (UCU) 1|tRNA arginine 1 (anticodon UCU)|transfer RNA arginine 1 (anticodon UCU)" Cytoplasmic transfer RNAs 842 1991-08-18 2014-06-19 2014-06-19 2014-06-19 7230 HG983622 2066114 610406 +HGNC:34670 TRR-TCT3-1 transfer RNA-Arg (TCT) 3-1 non-coding RNA RNA, transfer Approved 9 09 "TRNAR12|TRR-TCT3-2" "transfer RNA arginine 12 (anticodon UCU)|transfer RNA-Arg (TCT) 3-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189109 HG983624 +HGNC:34677 TRR-TCT3-2 transfer RNA-Arg (TCT) 3-2 non-coding RNA RNA, transfer Approved 11 11 "TRNAR14|TRR-TCT3-1" "transfer RNA arginine 14 (anticodon UCU)|transfer RNA-Arg (TCT) 3-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189115 HG983623 +HGNC:34728 TRR-TCT4-1 transfer RNA-Arg (TCT) 4-1 non-coding RNA RNA, transfer Approved 1 01 TRNAR16 transfer RNA arginine 16 (anticodon UCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189166 HG983625 +HGNC:34571 TRR-TCT5-1 transfer RNA-Arg (TCT) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAR5 transfer RNA arginine 5 (anticodon UCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189012 HG983626 +HGNC:12347 TRRAP transformation/transcription domain associated protein protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "TR-AP|PAF400|Tra1" transformation/transcription domain-associated protein SAGA complex 1059 1998-10-06 2016-03-15 2016-10-05 8295 ENSG00000196367 OTTHUMG00000150403 uc011kis.2 AF076974 NM_003496 "CCDS5659|CCDS59066" Q9Y4A5 "9708738|9885574" MGI:2153272 RGD:1305446 TRRAP 603015 objectId:2256 +HGNC:35102 TRS-ACT1-1 transfer RNA-Ser (ACT) 1-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNAS32P transfer RNA serine 32 (anticodon ACU) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189526 HG984007 NG_008584 +HGNC:34920 TRS-AGA1-1 transfer RNA-Ser (AGA) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS24 transfer RNA serine 24 (anticodon AGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189352 HG984008 +HGNC:34950 TRS-AGA2-1 transfer RNA-Ser (AGA) 2-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAS25|TRS-AGA2-2" "transfer RNA serine 25 (anticodon AGA)|transfer RNA-Ser (AGA) 2-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189382 HG984010 +HGNC:34637 TRS-AGA2-2 transfer RNA-Ser (AGA) 2-2 non-coding RNA RNA, transfer Approved 6 06 "TRNAS10|TRS-AGA2-3" "transfer RNA serine 10 (anticodon AGA)|transfer RNA-Ser (AGA) 2-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189077 HG984011 +HGNC:16293 TRS-AGA2-3 transfer RNA-Ser (AGA) 2-3 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 TRNS "TRS2|TRNAS2|TRS-AGA2-4" "tRNA serine (AGA) 2|tRNA serine 2 (anticodon AGA)|transfer RNA serine 2 (anticodon AGA)|transfer RNA-Ser (AGA) 2-4" Cytoplasmic transfer RNAs 842 2001-07-20 2016-02-15 2016-02-15 2016-02-15 23437 HG984012 3697066 189910 +HGNC:34810 TRS-AGA2-4 transfer RNA-Ser (AGA) 2-4 non-coding RNA RNA, transfer Approved 6 06 "TRNAS19|TRS-AGA2-5" "transfer RNA serine 19 (anticodon AGA)|transfer RNA-Ser (AGA) 2-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189247 HG984013 +HGNC:34811 TRS-AGA2-5 transfer RNA-Ser (AGA) 2-5 non-coding RNA RNA, transfer Approved 8 08 "TRNAS20|TRS-AGA2-6" "transfer RNA serine 20 (anticodon AGA)|transfer RNA-Ser (AGA) 2-6" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189248 HG984014 +HGNC:34747 TRS-AGA2-6 transfer RNA-Ser (AGA) 2-6 non-coding RNA RNA, transfer Approved 17 17 "TRNAS14|TRS-AGA2-1" "transfer RNA serine 14 (anticodon AGA)|transfer RNA-Ser (AGA) 2-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189184 HG984009 +HGNC:33201 TRS-AGA3-1 transfer RNA-Ser (AGA) 3-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 "TRS4|TRNAS4" "tRNA serine 4 (anticodon AGA)|transfer RNA serine 4 (anticodon AGA)" Cytoplasmic transfer RNAs 842 2006-12-14 2014-06-19 2014-06-19 2014-06-19 790951 HG984015 3340558 +HGNC:34629 TRS-AGA4-1 transfer RNA-Ser (AGA) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS9 transfer RNA serine 9 (anticodon AGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189070 HG984016 +HGNC:35001 TRS-AGA5-1 transfer RNA-Ser (AGA) 5-1 non-coding RNA RNA, transfer Approved 7 07 TRNAS28 transfer RNA serine 28 (anticodon AGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189432 HG984017 +HGNC:34989 TRS-AGA6-1 transfer RNA-Ser (AGA) 6-1 non-coding RNA RNA, transfer Approved 11 11 TRNAS26 transfer RNA serine 26 (anticodon AGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189420 HG984018 +HGNC:35060 TRS-AGA7-1 transfer RNA-Ser (AGA) 7-1 non-coding RNA RNA, transfer Approved 20q11.21 20q11.21 TRNAS29P transfer RNA serine 29 (anticodon AGA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189487 HG984019 NG_008545 +HGNC:34596 TRS-CGA1-1 transfer RNA-Ser (CGA) 1-1 non-coding RNA RNA, transfer Approved 17 17 TRNAS6 transfer RNA serine 6 (anticodon CGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189037 HG984020 +HGNC:34600 TRS-CGA2-1 transfer RNA-Ser (CGA) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS7 transfer RNA serine 7 (anticodon CGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189041 HG984021 +HGNC:34768 TRS-CGA3-1 transfer RNA-Ser (CGA) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS15 transfer RNA serine 15 (anticodon CGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189205 HG984022 +HGNC:34714 TRS-CGA4-1 transfer RNA-Ser (CGA) 4-1 non-coding RNA RNA, transfer Approved 12 12 TRNAS11 transfer RNA serine 11 (anticodon CGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189152 HG984023 +HGNC:34719 TRS-GCT1-1 transfer RNA-Ser (GCT) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS12 transfer RNA serine 12 (anticodon GCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189157 HG984024 +HGNC:34559 TRS-GCT2-1 transfer RNA-Ser (GCT) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS5 transfer RNA serine 5 (anticodon GCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189002 HG984025 +HGNC:34851 TRS-GCT3-1 transfer RNA-Ser (GCT) 3-1 non-coding RNA RNA, transfer Approved 11 11 TRNAS22 transfer RNA serine 22 (anticodon GCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189285 HG984026 +HGNC:34788 TRS-GCT4-1 transfer RNA-Ser (GCT) 4-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAS17|TRS-GCT4-3" "transfer RNA serine 17 (anticodon GCU)|transfer RNA-Ser (GCT) 4-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189225 HG984029 +HGNC:34792 TRS-GCT4-2 transfer RNA-Ser (GCT) 4-2 non-coding RNA RNA, transfer Approved 15 15 "TRNAS18|TRS-GCT4-1" "transfer RNA serine 18 (anticodon GCU)|transfer RNA-Ser (GCT) 4-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189229 HG984027 +HGNC:34898 TRS-GCT4-3 transfer RNA-Ser (GCT) 4-3 non-coding RNA RNA, transfer Approved 17 17 "TRNAS23|TRS-GCT4-2" "transfer RNA serine 23 (anticodon GCU)|transfer RNA-Ser (GCT) 4-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189331 HG984028 +HGNC:34721 TRS-GCT5-1 transfer RNA-Ser (GCT) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS13 transfer RNA serine 13 (anticodon GCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189159 HG984030 +HGNC:34781 TRS-GCT6-1 transfer RNA-Ser (GCT) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS16 transfer RNA serine 16 (anticodon GCU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189218 HG984031 +HGNC:34845 TRS-TGA1-1 transfer RNA-Ser (TGA) 1-1 non-coding RNA RNA, transfer Approved 10 10 TRNAS21 transfer RNA serine 21 (anticodon UGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189279 HG984032 +HGNC:16292 TRS-TGA2-1 transfer RNA-Ser (TGA) 2-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 "TRS1|TRNAS1" "tRNA serine (UGA) 1|tRNA serine 1 (anticodon UGA)|transfer RNA serine 1 (anticodon UGA)" Cytoplasmic transfer RNAs 842 2001-07-20 2014-06-19 2014-06-19 2014-06-19 94017 HG984033 3648680 606171 +HGNC:34999 TRS-TGA3-1 transfer RNA-Ser (TGA) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAS27 transfer RNA serine 27 (anticodon UGA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189430 HG984034 +HGNC:16294 TRS-TGA4-1 transfer RNA-Ser (TGA) 4-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 "TRS3|TRNAS3" "tRNA serine (UGA) 3|tRNA serine 3 (anticodon UGA)|transfer RNA serine 3 (anticodon UGA)" Cytoplasmic transfer RNAs 842 2001-07-20 2014-06-19 2014-06-19 2014-06-19 23540 HG984035 1549482 606172 +HGNC:34995 TRSUP-CTA1-1 transfer RNA suppressor (CTA) 1-1 non-coding RNA RNA, transfer Approved 17 17 TRNASUP3 transfer RNA suppressor 3 (anticodon CUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189426 HG984036 +HGNC:35012 TRSUP-CTA2-1 transfer RNA suppressor (CTA) 2-1 non-coding RNA RNA, transfer Approved 3p25.1 03p25.1 TRNASUP4P transfer RNA suppressor 4 (anticodon CUA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189442 HG984037 NG_008498 +HGNC:35043 TRSUP-CTA3-1 transfer RNA suppressor (CTA) 3-1 non-coding RNA RNA, transfer Approved 14q24.3 14q24.3 TRNASUP6P transfer RNA suppressor 6 (anticodon CUA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189470 HG984038 NG_008528 +HGNC:34640 TRSUP-TTA1-1 transfer RNA suppressor (TTA) 1-1 non-coding RNA RNA, transfer Approved 17q23.2 17q23.2 TRNASUP1 transfer RNA suppressor 1 (anticodon UUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189080 HG984039 +HGNC:34897 TRSUP-TTA2-1 transfer RNA suppressor (TTA) 2-1 non-coding RNA RNA, transfer Approved 21 21 TRNASUP2 transfer RNA suppressor 2 (anticodon UUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189330 HG984040 +HGNC:35024 TRSUP-TTA3-1 transfer RNA suppressor (TTA) 3-1 non-coding RNA RNA, transfer Approved 4p16.1 04p16.1 TRNASUP5P transfer RNA suppressor 5 (anticodon UUA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189453 HG984041 NG_008509 +HGNC:34750 TRT-AGT1-1 transfer RNA-Thr (AGT) 1-1 non-coding RNA RNA, transfer Approved 17 17 TRNAT8 transfer RNA threonine 8 (anticodon AGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189187 HG984042 +HGNC:34785 TRT-AGT1-2 transfer RNA-Thr (AGT) 1-2 non-coding RNA RNA, transfer Approved 17 17 TRNAT9 transfer RNA threonine 9 (anticodon AGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189222 HG984043 +HGNC:34563 TRT-AGT1-3 transfer RNA-Thr (AGT) 1-3 non-coding RNA RNA, transfer Approved 19 19 TRNAT4 transfer RNA threonine 4 (anticodon AGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189006 HG984044 +HGNC:34886 TRT-AGT2-1 transfer RNA-Thr (AGT) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAT14 transfer RNA threonine 14 (anticodon AGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189319 HG984045 +HGNC:34908 TRT-AGT2-2 transfer RNA-Thr (AGT) 2-2 non-coding RNA RNA, transfer Approved 6 06 TRNAT15 transfer RNA threonine 15 (anticodon AGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189340 HG984046 615309 +HGNC:35003 TRT-AGT3-1 transfer RNA-Thr (AGT) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAT21 transfer RNA threonine 21 (anticodon AGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189433 HG984047 +HGNC:34942 TRT-AGT4-1 transfer RNA-Thr (AGT) 4-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAT18|TRT-AGT5-1" "transfer RNA threonine 18 (anticodon AGU)|transfer RNA-Thr (AGT) 5-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189374 HG984049 +HGNC:35008 TRT-AGT5-1 transfer RNA-Thr (AGT) 5-1 non-coding RNA RNA, transfer Approved 17 17 "TRNAT22|TRT-AGT4-1" "transfer RNA threonine 22 (anticodon AGU)|transfer RNA-Thr (AGT) 4-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189438 HG984048 +HGNC:34705 TRT-AGT6-1 transfer RNA-Thr (AGT) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAT7 transfer RNA threonine 7 (anticodon AGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189143 HG984050 +HGNC:12352 TRT-AGT7-1 transfer RNA-Thr (AGT) 7-1 non-coding RNA RNA, transfer Approved 17q24.1 17q24.1 "TRT3|TRNAT3" "tRNA threonine (AGU) 3|transfer RNA threonine 3 (anticodon AGU)" Cytoplasmic transfer RNAs 842 1993-05-24 2014-06-19 2014-06-19 2014-06-19 7238 HG984051 1457046 +HGNC:34594 TRT-CGT1-1 transfer RNA-Thr (CGT) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAT5 transfer RNA threonine 5 (anticodon CGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189035 HG984052 +HGNC:34646 TRT-CGT2-1 transfer RNA-Thr (CGT) 2-1 non-coding RNA RNA, transfer Approved 16 16 TRNAT6 transfer RNA threonine 6 (anticodon CGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189086 HG984053 +HGNC:34928 TRT-CGT3-1 transfer RNA-Thr (CGT) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAT17 transfer RNA threonine 17 (anticodon CGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189360 HG984054 +HGNC:34808 TRT-CGT4-1 transfer RNA-Thr (CGT) 4-1 non-coding RNA RNA, transfer Approved 17 17 TRNAT10 transfer RNA threonine 10 (anticodon CGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189245 HG984055 +HGNC:34866 TRT-CGT5-1 transfer RNA-Thr (CGT) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAT13 transfer RNA threonine 13 (anticodon CGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189300 HG984056 +HGNC:34821 TRT-CGT6-1 transfer RNA-Thr (CGT) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAT11 transfer RNA threonine 11 (anticodon CGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189258 HG984057 +HGNC:34912 TRT-TGT1-1 transfer RNA-Thr (TGT) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAT16 transfer RNA threonine 16 (anticodon UGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189344 HG984058 +HGNC:34946 TRT-TGT2-1 transfer RNA-Thr (TGT) 2-1 non-coding RNA RNA, transfer Approved 1 01 TRNAT19 transfer RNA threonine 19 (anticodon UGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189378 HG984059 +HGNC:12351 TRT-TGT3-1 transfer RNA-Thr (TGT) 3-1 non-coding RNA RNA, transfer Approved 14q11.2 14q11.2 "TRT2|TRNAT2" "tRNA threonine (UGU) 2|transfer RNA threonine 2 (anticodon UGU)" Cytoplasmic transfer RNAs 842 1990-04-27 2014-06-19 2014-06-19 2014-06-19 7237 HG984060 189933 +HGNC:34988 TRT-TGT4-1 transfer RNA-Thr (TGT) 4-1 non-coding RNA RNA, transfer Approved 14 14 TRNAT20 transfer RNA threonine 20 (anticodon UGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189419 HG984061 +HGNC:34826 TRT-TGT5-1 transfer RNA-Thr (TGT) 5-1 non-coding RNA RNA, transfer Approved 14 14 TRNAT12 transfer RNA threonine 12 (anticodon UGU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189263 HG984062 +HGNC:12350 TRT-TGT6-1 transfer RNA-Thr (TGT) 6-1 non-coding RNA RNA, transfer Approved 5q35.3 05q35.3 "TRT1|TRNAT1" "tRNA threonine (UGU) 1|tRNA threonine 1 (anticodon UGU)|transfer RNA threonine 1 (anticodon UGU)" Cytoplasmic transfer RNAs 842 1990-02-24 2014-06-19 2014-06-19 2014-06-19 7236 HG984063 "2613239|2676726" 189913 +HGNC:12348 TRU-TCA1-1 transfer RNA-SeC (TCA) 1-1 non-coding RNA RNA, transfer Approved 19q13.2-q13.3 19q13.2-q13.3 tRNA(Sec) "TRSP|TRNAU1" "tRNA phosphoserine (opal suppressor)|transfer RNA selenocysteine/phosphoserine (opal suppressor)|transfer RNA selenocysteine 1 (anticodon UCA)" Cytoplasmic transfer RNAs 842 1986-01-01 2014-06-19 2014-06-19 2014-06-19 7234 HG984004 1395717 165060 +HGNC:12349 TRU-TCA2-1 transfer RNA-SeC (TCA) 2-1 non-coding RNA RNA, transfer Approved 22q11 22q11 TRSP2 transfer RNA selenocysteine/phosphoserine (opal suppressor) 2 "TRSPP1|TRNAU2" "transfer RNA selenocysteine/phosphoserine (opal suppressor) pseudogene 1|transfer RNA selenocysteine 2 (anticodon UCA)" Cytoplasmic transfer RNAs 842 2001-06-22 2014-06-19 2014-06-19 2014-06-19 7235 HG984005 NG_000872 +HGNC:34525 TRU-TCA3-1 transfer RNA-SeC (TCA) 3-1 non-coding RNA RNA, transfer Approved 17q21.1 17q21.1 TRNAU3 transfer RNA selenocysteine 3 (anticodon UCA) Cytoplasmic transfer RNAs 842 2008-08-19 2014-06-19 2014-06-19 2014-06-19 100188989 HG984006 +HGNC:16060 TRUB1 TruB pseudouridine synthase family member 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 PUS4 probable tRNA pseudouridine synthase 1 "TruB pseudouridine (psi) synthase homolog 1 (E. coli)|TruB pseudouridine (psi) synthase family member 1" 2001-11-16 2016-04-05 2016-04-05 142940 ENSG00000165832 OTTHUMG00000019094 uc001lcd.4 AF448144 NM_139169 CCDS7591 Q8WWH5 12736709 MGI:1919383 RGD:1308502 TRUB1 610726 +HGNC:17170 TRUB2 TruB pseudouridine synthase family member 2 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 CLONE24922 "TruB pseudouridine (psi) synthase homolog 2 (E. coli)|TruB pseudouridine (psi) synthase family member 2" 2001-11-16 2016-04-05 2016-04-05 26995 ENSG00000167112 OTTHUMG00000020741 uc004buq.2 AK001956 NM_015679 CCDS6897 O95900 12736709 MGI:2442186 RGD:1359394 TRUB2 610727 +HGNC:50813 TRUND-NNN1-1 transfer RNA-undetermined (NNN) 1-1 pseudogene pseudogene Approved 6 06 2014-06-20 2015-03-05 103482529 HG984090 18984615 +HGNC:50814 TRUND-NNN2-1 transfer RNA-undetermined (NNN) 2-1 pseudogene pseudogene Approved 8 08 2014-06-20 2015-03-05 103482523 HG984091 18984615 +HGNC:50815 TRUND-NNN3-1 transfer RNA-undetermined (NNN) 3-1 pseudogene pseudogene Approved 1 01 2014-06-20 2015-03-05 103482527 HG984092 18984615 +HGNC:50816 TRUND-NNN4-1 transfer RNA-undetermined (NNN) 4-1 pseudogene pseudogene Approved 1 01 2014-06-20 2015-03-05 103482530 HG984093 18984615 +HGNC:50817 TRUND-NNN5-1 transfer RNA-undetermined (NNN) 5-1 pseudogene pseudogene Approved 17 17 2014-06-20 2015-03-05 103482524 HG984094 18984615 +HGNC:50818 TRUND-NNN6-1 transfer RNA-undetermined (NNN) 6-1 pseudogene pseudogene Approved 17 17 2014-06-20 2015-03-05 103482525 HG984095 18984615 +HGNC:50819 TRUND-NNN7-1 transfer RNA-undetermined (NNN) 7-1 pseudogene pseudogene Approved 1 01 2014-06-20 2015-03-05 103482531 HG984096 18984615 +HGNC:50820 TRUND-NNN8-1 transfer RNA-undetermined (NNN) 8-1 pseudogene pseudogene Approved 1 01 2014-06-20 2015-03-05 103482528 HG984097 18984615 +HGNC:50821 TRUND-NNN9-1 transfer RNA-undetermined (NNN) 9-1 pseudogene pseudogene Approved 2 02 2014-06-20 2015-03-05 103482526 HG984098 18984615 +HGNC:50822 TRUND-NNN10-1 transfer RNA-undetermined (NNN) 10-1 pseudogene pseudogene Approved 19 19 2014-06-20 2015-03-05 103482532 HG984099 18984615 +HGNC:34885 TRV-AAC1-1 transfer RNA-Val (AAC) 1-1 non-coding RNA RNA, transfer Approved 3 03 TRNAV24 transfer RNA valine 24 (anticodon AAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189318 HG984100 615310 +HGNC:34542 TRV-AAC1-2 transfer RNA-Val (AAC) 1-2 non-coding RNA RNA, transfer Approved 5 05 TRNAV5 transfer RNA valine 5 (anticodon AAC) Cytoplasmic transfer RNAs 842 2008-08-27 2014-06-19 2014-06-19 2014-06-19 100188990 HG984101 +HGNC:12355 TRV-AAC1-3 transfer RNA-Val (AAC) 1-3 non-coding RNA RNA, transfer Approved 5 05 "TRV3|TRNAV3" "transfer RNA valine (IAC), isoacceptor 3|transfer RNA valine 3 (anticodon AAC)" Cytoplasmic transfer RNAs 842 1993-08-04 2014-06-19 2014-06-19 2014-06-19 7241 HG984102 1457046 +HGNC:12353 TRV-AAC1-4 transfer RNA-Val (AAC) 1-4 non-coding RNA RNA, transfer Approved 5q35.3 05q35.3 "TRV|TRV1|TRNAV1" "tRNA valine 1|transfer RNA valine 1|transfer RNA valine 1 (anticodon AAC)" Cytoplasmic transfer RNAs 842 1990-02-24 2014-06-19 2014-06-19 2014-06-19 7239 HG984103 2766931 189921 +HGNC:33246 TRV-AAC1-5 transfer RNA-Val (AAC) 1-5 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 HtV1 "TRV7|TRNAV7" "transfer RNA valine 7 (anticodon RAC)|transfer RNA valine 7 (anticodon AAC)" Cytoplasmic transfer RNAs 842 2007-01-11 2014-06-19 2014-06-19 2014-06-19 791230 HG984104 3023191 +HGNC:34543 TRV-AAC2-1 transfer RNA-Val (AAC) 2-1 non-coding RNA RNA, transfer Approved 5 05 TRNAV10 transfer RNA valine 10 (anticodon AAC) Cytoplasmic transfer RNAs 842 2008-08-27 2014-06-19 2014-06-19 2014-06-19 100188992 HG984105 +HGNC:33247 TRV-AAC3-1 transfer RNA-Val (AAC) 3-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 HtV2 "TRV8|TRNAV8" "transfer RNA valine 8 (anticodon RAC)|transfer RNA valine 8 (anticodon AAC)" Cytoplasmic transfer RNAs 842 2007-01-11 2014-06-19 2014-06-19 2014-06-19 791231 HG984106 3023191 +HGNC:34723 TRV-AAC4-1 transfer RNA-Val (AAC) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV17 transfer RNA valine 17 (anticodon AAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189161 HG984107 615308 +HGNC:34573 TRV-AAC5-1 transfer RNA-Val (AAC) 5-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV12 transfer RNA valine 12 (anticodon AAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189014 HG984108 615307 +HGNC:34740 TRV-AAC6-1 transfer RNA-Val (AAC) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV18 transfer RNA valine 18 (anticodon AAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189178 HG984109 +HGNC:34973 TRV-AAC7-1 transfer RNA-Val (AAC) 7-1 non-coding RNA RNA, transfer Approved 1 01 TRNAV30 transfer RNA valine 30 (anticodon AAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189404 HG984110 +HGNC:34941 TRV-CAC1-1 transfer RNA-Val (CAC) 1-1 non-coding RNA RNA, transfer Approved 1 01 TRNAV29 transfer RNA valine 29 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189373 HG984111 +HGNC:12354 TRV-CAC1-2 transfer RNA-Val (CAC) 1-2 non-coding RNA RNA, transfer Approved 5q35.3 05q35.3 "TRV2|TRNAV2" "transfer RNA valine (CAC) 2|transfer RNA valine 2 (anticodon CAC)" Cytoplasmic transfer RNAs 842 1993-08-04 2014-06-19 2014-06-19 2014-06-19 7240 HG984112 612995 +HGNC:33248 TRV-CAC1-3 transfer RNA-Val (CAC) 1-3 non-coding RNA RNA, transfer Approved 5q35.3 05q35.3 HtV3 "TRV9|TRNAV9" transfer RNA valine 9 (anticodon CAC) Cytoplasmic transfer RNAs 842 2007-01-11 2014-06-19 2014-06-19 2014-06-19 791232 HG984113 3023191 +HGNC:34541 TRV-CAC1-4 transfer RNA-Val (CAC) 1-4 non-coding RNA RNA, transfer Approved 5 05 TRNAV4 transfer RNA valine 4 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-27 2014-06-19 2014-06-19 2014-06-19 100189541 HG984114 +HGNC:33245 TRV-CAC1-5 transfer RNA-Val (CAC) 1-5 non-coding RNA RNA, transfer Approved 5q35.3 05q35.3 "TRV6|TRNAV6" transfer RNA valine 6 (anticodon CAC) Cytoplasmic transfer RNAs 842 2007-01-11 2014-06-19 2014-06-19 2014-06-19 100049614 HG984115 2766931 +HGNC:34790 TRV-CAC1-6 transfer RNA-Val (CAC) 1-6 non-coding RNA RNA, transfer Approved 6 06 TRNAV21 transfer RNA valine 21 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189227 HG984116 615306 +HGNC:34931 TRV-CAC2-1 transfer RNA-Val (CAC) 2-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV27 transfer RNA valine 27 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189363 HG984117 +HGNC:34985 TRV-CAC3-1 transfer RNA-Val (CAC) 3-1 non-coding RNA RNA, transfer Approved 19 19 TRNAV32 transfer RNA valine 32 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189416 HG984118 615304 +HGNC:34893 TRV-CAC4-1 transfer RNA-Val (CAC) 4-1 non-coding RNA RNA, transfer Approved 1 01 TRNAV25 transfer RNA valine 25 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189326 HG984119 +HGNC:34791 TRV-CAC5-1 transfer RNA-Val (CAC) 5-1 non-coding RNA RNA, transfer Approved 1 01 TRNAV22 transfer RNA valine 22 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189228 HG984120 +HGNC:34936 TRV-CAC6-1 transfer RNA-Val (CAC) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV28 transfer RNA valine 28 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189368 HG984121 +HGNC:34662 TRV-CAC7-1 transfer RNA-Val (CAC) 7-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV15 transfer RNA valine 15 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189101 HG984122 +HGNC:34704 TRV-CAC8-1 transfer RNA-Val (CAC) 8-1 non-coding RNA RNA, transfer Approved 1 01 TRNAV16 transfer RNA valine 16 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189142 HG984123 +HGNC:34759 TRV-CAC9-1 transfer RNA-Val (CAC) 9-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV20 transfer RNA valine 20 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189196 HG984124 +HGNC:38576 TRV-CAC10-1 transfer RNA-Val (CAC) 10-1 non-coding RNA RNA, transfer Approved 1 01 TRNAV38 transfer RNA valine 38 (anticodon CAC) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 100873876 HG984125 +HGNC:38578 TRV-CAC11-1 transfer RNA-Val (CAC) 11-1 non-coding RNA RNA, transfer Approved 1 01 TRNAV39 transfer RNA valine 39 (anticodon CAC) Cytoplasmic transfer RNAs 842 2010-06-23 2014-06-19 2014-06-19 2014-06-19 103456510 HG984126 +HGNC:35052 TRV-CAC11-2 transfer RNA-Val (CAC) 11-2 non-coding RNA RNA, transfer Approved 1p36.13 01p36.13 TRNAV34P transfer RNA valine 34 (anticodon CAC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189479 HG984127 NG_008537 +HGNC:34632 TRV-CAC12-1 transfer RNA-Val (CAC) 12-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV14 transfer RNA valine 14 (anticodon CAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189073 HG984128 +HGNC:35075 TRV-CAC13-1 transfer RNA-Val (CAC) 13-1 non-coding RNA RNA, transfer Approved 1p36.13 01p36.13 TRNAV36P transfer RNA valine 36 (anticodon CAC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189500 HG984129 NG_008558 +HGNC:35050 TRV-CAC14-1 transfer RNA-Val (CAC) 14-1 non-coding RNA RNA, transfer Approved 20q13.12 20q13.12 TRNAV33P transfer RNA valine 33 (anticodon CAC) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189477 HG984130 NG_008535 +HGNC:34544 TRV-TAC1-1 transfer RNA-Val (TAC) 1-1 non-coding RNA RNA, transfer Approved 11 11 TRNAV11 transfer RNA valine 11 (anticodon UAC) Cytoplasmic transfer RNAs 842 2008-08-27 2014-06-19 2014-06-19 2014-06-19 100188993 HG984131 +HGNC:34754 TRV-TAC1-2 transfer RNA-Val (TAC) 1-2 non-coding RNA RNA, transfer Approved X X TRNAV19 transfer RNA valine 19 (anticodon UAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189191 HG984132 +HGNC:34849 TRV-TAC2-1 transfer RNA-Val (TAC) 2-1 non-coding RNA RNA, transfer Approved 11 11 TRNAV23 transfer RNA valine 23 (anticodon UAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189283 HG984133 +HGNC:34910 TRV-TAC3-1 transfer RNA-Val (TAC) 3-1 non-coding RNA RNA, transfer Approved 10 10 TRNAV26 transfer RNA valine 26 (anticodon UAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189342 HG984134 +HGNC:34977 TRV-TAC4-1 transfer RNA-Val (TAC) 4-1 non-coding RNA RNA, transfer Approved 6 06 TRNAV31 transfer RNA valine 31 (anticodon UAC) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189408 HG984135 +HGNC:34685 TRW-CCA1-1 transfer RNA-Trp (CCA) 1-1 non-coding RNA RNA, transfer Approved 17 17 TRNAW4 transfer RNA tryptophan 4 (anticodon CCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189123 HG984064 +HGNC:34766 TRW-CCA2-1 transfer RNA-Trp (CCA) 2-1 non-coding RNA RNA, transfer Approved 17 17 TRNAW7 transfer RNA tryptophan 7 (anticodon CCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189203 HG984065 +HGNC:35006 TRW-CCA3-1 transfer RNA-Trp (CCA) 3-1 non-coding RNA RNA, transfer Approved 6 06 "TRNAW9|TRW-CCA3-2" "transfer RNA tryptophan 9 (anticodon CCA)|transfer RNA-Trp (CCA) 3-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189436 HG984067 +HGNC:34607 TRW-CCA3-2 transfer RNA-Trp (CCA) 3-2 non-coding RNA RNA, transfer Approved 6 06 "TRNAW2|TRW-CCA3-3" "transfer RNA tryptophan 2 (anticodon CCA)|transfer RNA-Trp (CCA) 3-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189048 HG984068 +HGNC:34674 TRW-CCA3-3 transfer RNA-Trp (CCA) 3-3 non-coding RNA RNA, transfer Approved 17 17 "TRNAW3|TRW-CCA3-1" "transfer RNA tryptophan 3 (anticodon CCA)|transfer RNA-Trp (CCA) 3-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189112 HG984066 +HGNC:34733 TRW-CCA4-1 transfer RNA-Trp (CCA) 4-1 non-coding RNA RNA, transfer Approved 12 12 TRNAW5 transfer RNA tryptophan 5 (anticodon CCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189171 HG984069 +HGNC:34753 TRW-CCA5-1 transfer RNA-Trp (CCA) 5-1 non-coding RNA RNA, transfer Approved 7 07 TRNAW6 transfer RNA tryptophan 6 (anticodon CCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189190 HG984070 +HGNC:34876 TRW-CCA6-1 transfer RNA-Trp (CCA) 6-1 non-coding RNA RNA, transfer Approved 9 09 TRNAW8 transfer RNA tryptophan 8 (anticodon CCA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189309 HG984071 +HGNC:12360 TRW-CCA7-1 transfer RNA-Trp (CCA) 7-1 non-coding RNA RNA, transfer Approved 11p11.2 11p11.2 "TRW|TRNAW1" "tRNA tryptophan|transfer RNA tryptophan|transfer RNA tryptophan 1 (anticodon CCA)" Cytoplasmic transfer RNAs 842 1994-02-18 2014-06-19 2014-06-19 2014-06-19 7246 HG984072 +HGNC:34574 TRX-CAT1-1 transfer RNA-iMet (CAT) 1-1 non-coding RNA RNA, transfer Approved 1q21.3 01q21.3 transfer RNA initiator methionine (CAT) 1-1 TRNAM3 transfer RNA methionine 3 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-14 100189015 HG984136 +HGNC:12318 TRX-CAT1-2 transfer RNA-iMet (CAT) 1-2 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 transfer RNA initiator methionine (CAT) 1-3 "TRM1|TRNAMI2|TRM2|TRMI2|TRNAM1|TRX-CAT1-3" "tRNA methionine 1|tRNA methionine 1 (anticodon CAU)|transfer RNA methionine initiator 2 (anticodon CAU)|tRNA methionine initiator 2|transfer RNA methionine initiator 2|transfer RNA methionine 1 (anticodon CAU)|transfer RNA-iMet (CAT) 1-3" Cytoplasmic transfer RNAs 842 1995-05-08 2016-02-15 2016-02-15 2016-02-15 7210 HG984138 8661117 180621 +HGNC:34655 TRX-CAT1-3 transfer RNA-iMet (CAT) 1-3 non-coding RNA RNA, transfer Approved 6 06 transfer RNA initiator methionine (CAT) 1-4 "TRNAM6|TRX-CAT1-4" "transfer RNA methionine 6 (anticodon CAU)|transfer RNA-iMet (CAT) 1-4" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189094 HG984139 +HGNC:34599 TRX-CAT1-4 transfer RNA-iMet (CAT) 1-4 non-coding RNA RNA, transfer Approved 6 06 transfer RNA initiator methionine (CAT) 1-5 "TRNAM4|TRX-CAT1-5" "transfer RNA methionine 4 (anticodon CAU)|transfer RNA-iMet (CAT) 1-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189040 HG984140 +HGNC:34913 TRX-CAT1-5 transfer RNA-iMet (CAT) 1-5 non-coding RNA RNA, transfer Approved 6 06 transfer RNA initiator methionine (CAT) 1-6 "TRNAM18|TRX-CAT1-6" "transfer RNA methionine 18 (anticodon CAU)|transfer RNA-iMet (CAT) 1-6" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189345 HG984141 +HGNC:34863 TRX-CAT1-6 transfer RNA-iMet (CAT) 1-6 non-coding RNA RNA, transfer Approved 6 06 transfer RNA initiator methionine (CAT) 1-7 "TRNAM15|TRX-CAT1-7" "transfer RNA methionine 15 (anticodon CAU)|transfer RNA-iMet (CAT) 1-7" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189297 HG984142 +HGNC:34882 TRX-CAT1-7 transfer RNA-iMet (CAT) 1-7 non-coding RNA RNA, transfer Approved 6 06 transfer RNA initiator methionine (CAT) 1-8 "TRNAM17|TRX-CAT1-8" "transfer RNA methionine 17 (anticodon CAU)|transfer RNA-iMet (CAT) 1-8" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189315 HG984143 +HGNC:34818 TRX-CAT1-8 transfer RNA-iMet (CAT) 1-8 non-coding RNA RNA, transfer Approved 17 17 transfer RNA initiator methionine (CAT) 1-2 "TRNAM14|TRX-CAT1-2" "transfer RNA methionine 14 (anticodon CAU)|transfer RNA-iMet (CAT) 1-2" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189255 HG984137 +HGNC:12322 TRX-CAT2-1 transfer RNA-iMet (CAT) 2-1 non-coding RNA RNA, transfer Approved 6p22.1 06p22.1 transfer RNA initiator methionine (CAT) 2-1 "TRM1|TRMI1|TRNAMI1|TRNAM2" "transfer RNA methionine initiator 1 (anticodon CAU)|transfer RNA methionine 2 (anticodon CAU)" Cytoplasmic transfer RNAs 842 2001-06-22 2014-06-19 2014-06-19 2014-06-19 7212 HG984144 6261953 180620 +HGNC:34749 TRX-CAT3-1 transfer RNA-iMet (CAT) 3-1 non-coding RNA RNA, transfer Approved 9 09 transfer RNA initiator methionine (CAT) 3-1 TRNAM10 transfer RNA methionine 10 (anticodon CAU) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189186 HG984145 +HGNC:34816 TRY-ATA1-1 transfer RNA-Tyr (ATA) 1-1 non-coding RNA RNA, transfer Approved 2 02 TRNAY9 transfer RNA tyrosine 9 (anticodon AUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189253 HG984073 +HGNC:34835 TRY-GTA1-1 transfer RNA-Tyr (GTA) 1-1 non-coding RNA RNA, transfer Approved 6 06 TRNAY10 transfer RNA tyrosine 10 (anticodon GUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189272 HG984074 +HGNC:34581 TRY-GTA2-1 transfer RNA-Tyr (GTA) 2-1 non-coding RNA RNA, transfer Approved 2 02 TRNAY4 transfer RNA tyrosine 4 (anticodon GUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189022 HG984075 +HGNC:34724 TRY-GTA3-1 transfer RNA-Tyr (GTA) 3-1 non-coding RNA RNA, transfer Approved 6 06 TRNAY7 transfer RNA tyrosine 7 (anticodon GUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189162 HG984076 +HGNC:34974 TRY-GTA4-1 transfer RNA-Tyr (GTA) 4-1 non-coding RNA RNA, transfer Approved 14 14 TRNAY13 transfer RNA tyrosine 13 (anticodon GUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189405 HG984077 +HGNC:35007 TRY-GTA5-1 transfer RNA-Tyr (GTA) 5-1 non-coding RNA RNA, transfer Approved 8 08 "TRNAY15|TRY-GTA5-4" "transfer RNA tyrosine 15 (anticodon GUA)|transfer RNA-Tyr (GTA) 5-4" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189437 HG984081 +HGNC:34663 TRY-GTA5-2 transfer RNA-Tyr (GTA) 5-2 non-coding RNA RNA, transfer Approved 8 08 "TRNAY6|TRY-GTA5-5" "transfer RNA tyrosine 6 (anticodon GUA)|transfer RNA-Tyr (GTA) 5-5" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189102 HG984082 +HGNC:34993 TRY-GTA5-3 transfer RNA-Tyr (GTA) 5-3 non-coding RNA RNA, transfer Approved 14 14 "TRNAY14|TRY-GTA5-1" "transfer RNA tyrosine 14 (anticodon GUA)|transfer RNA-Tyr (GTA) 5-1" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189424 HG984078 +HGNC:33250 TRY-GTA5-4 transfer RNA-Tyr (GTA) 5-4 non-coding RNA RNA, transfer Approved 14q11.2 14q11.2 "TRNAY2|TRY-GTA5-2" "transfer RNA tyrosine 2 (anticodon GUA)|transfer RNA-Tyr (GTA) 5-2" Cytoplasmic transfer RNAs 842 2007-02-01 2016-02-15 2016-02-15 2016-02-15 100009602 HG984079 3636257 +HGNC:34558 TRY-GTA5-5 transfer RNA-Tyr (GTA) 5-5 non-coding RNA RNA, transfer Approved 14 14 "TRNAY3|TRY-GTA5-3" "transfer RNA tyrosine 3 (anticodon GUA)|transfer RNA-Tyr (GTA) 5-3" Cytoplasmic transfer RNAs 842 2008-08-29 2016-02-15 2016-02-15 2016-02-15 100189001 HG984080 +HGNC:34782 TRY-GTA6-1 transfer RNA-Tyr (GTA) 6-1 non-coding RNA RNA, transfer Approved 6 06 TRNAY8 transfer RNA tyrosine 8 (anticodon GUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189219 HG984083 +HGNC:33249 TRY-GTA7-1 transfer RNA-Tyr (GTA) 7-1 non-coding RNA RNA, transfer Approved 14q11.2 14q11.2 TRNAY1 transfer RNA tyrosine 1 (anticodon GUA) Cytoplasmic transfer RNAs 842 2007-02-01 2014-06-19 2014-06-19 2014-06-19 100009601 HG984084 3636257 +HGNC:34905 TRY-GTA8-1 transfer RNA-Tyr (GTA) 8-1 non-coding RNA RNA, transfer Approved 6 06 TRNAY12 transfer RNA tyrosine 12 (anticodon GUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189337 HG984085 +HGNC:34616 TRY-GTA9-1 transfer RNA-Tyr (GTA) 9-1 non-coding RNA RNA, transfer Approved 8 08 TRNAY5 transfer RNA tyrosine 5 (anticodon GUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189057 HG984086 +HGNC:34842 TRY-GTA10-1 transfer RNA-Tyr (GTA) 10-1 non-coding RNA RNA, transfer Approved 7 07 TRNAY11 transfer RNA tyrosine 11 (anticodon GUA) Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-06-19 100189278 HG984087 +HGNC:35082 TRY-GTA11-1 transfer RNA-Tyr (GTA) 11-1 non-coding RNA RNA, transfer Approved 7q36.1 07q36.1 TRNAY17P transfer RNA tyrosine 17 (anticodon GUA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189507 HG984088 NG_008565 +HGNC:35071 TRY-GTA12-1 transfer RNA-Tyr (GTA) 12-1 non-coding RNA RNA, transfer Approved 15q26.1 15q26.1 TRNAY16P transfer RNA tyrosine 16 (anticodon GUA) pseudogene Cytoplasmic transfer RNAs 842 2008-08-29 2014-06-19 2014-06-19 2014-11-19 100189496 HG984089 NG_008554 +HGNC:30636 TSACC TSSK6 activating cochaperone protein-coding gene gene with protein product Approved 1q22 01q22 "SSTK-IP|SIP" SSTK-interacting protein C1orf182 chromosome 1 open reading frame 182 2005-08-01 2012-08-16 2016-05-24 2016-05-24 128229 ENSG00000163467 OTTHUMG00000024060 uc001foo.4 AY048672 NM_144627 "CCDS1141|CCDS76223" Q96A04 20829357 MGI:1924177 RGD:1304953 +HGNC:12362 TSC1 tuberous sclerosis 1 protein-coding gene gene with protein product Approved 9q34 09q34 "KIAA0243|LAM|hamartin" TSC 1986-01-01 2016-10-12 7248 ENSG00000165699 OTTHUMG00000020844 uc004cca.3 AF013168 XM_011518979 "CCDS6956|CCDS55350" Q92574 "9242607|10806479" MGI:1929183 RGD:620124 "TSC Mutation Database|http://www.LOVD.nl/TSC1|Tuberous sclerosis database|http://chromium.liacs.nl/LOVD2/TSC/home.php?select_db=TSC1|LRG_486|http://www.lrg-sequence.org/LRG/LRG_486" TSC1 605284 120309 +HGNC:12363 TSC2 tuberous sclerosis 2 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "tuberin|LAM|PPP1R160" protein phosphatase 1, regulatory subunit 160 TSC4 Protein phosphatase 1 regulatory subunits 694 1989-05-25 2016-10-12 7249 ENSG00000103197 OTTHUMG00000128745 uc002con.4 AB014460 NM_000548 "CCDS10458|CCDS45384|CCDS58408|CCDS81932|CCDS81933|CCDS81934" P49815 "1303246|7558029" MGI:102548 RGD:3908 "TSC2 Mutation Database|http://www.LOVD.nl/TSC2|Tuberous sclerosis database|http://chromium.liacs.nl/LOVD2/TSC/home.php?select_db=TSC2|LRG_487|http://www.lrg-sequence.org/LRG/LRG_487" TSC2 191092 120315 +HGNC:12364 TSC3 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-01-11 +HGNC:16826 TSC22D1 TSC22 domain family member 1 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "TSC22|MGC17597" TGFB1I4 "transforming growth factor beta 1 induced transcript 4|TSC22 domain family, member 1" 2004-04-16 2005-03-03 2015-11-18 2016-10-05 8848 ENSG00000102804 OTTHUMG00000016838 uc001uzm.5 AJ222700 NM_006022 "CCDS9392|CCDS31966|CCDS58291|CCDS73565" Q15714 "8651929|9022669" MGI:109127 RGD:3850 TSC22D1 607715 +HGNC:43684 TSC22D1-AS1 TSC22D1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 TSC22D1 antisense RNA 1 (non-protein coding) 2012-01-30 2012-08-15 2012-10-12 641467 ENSG00000278156 OTTHUMG00000187411 uc021rjb.2 BC040675 NR_038381 +HGNC:29095 TSC22D2 TSC22 domain family member 2 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "KIAA0669|TILZ4a|TILZ4b|TILZ4c" TSC22 domain family, member 2 2005-03-01 2015-11-18 2015-11-18 9819 ENSG00000196428 OTTHUMG00000159744 uc003exv.4 AB014569 NM_014779 CCDS3149 O75157 9734811 MGI:1919283 RGD:1593169 TSC22D2 +HGNC:3051 TSC22D3 TSC22 domain family member 3 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 "DIP|GILZ|TSC-22R|hDIP" glucocorticoid-induced leucine zipper DSIPI "delta sleep inducing peptide, immunoreactor|TSC22 domain family, member 3" 1997-06-24 2005-03-03 2015-11-18 2015-11-18 1831 ENSG00000157514 OTTHUMG00000022168 uc004eng.4 Z50781 NM_198057 "CCDS14530|CCDS14531|CCDS35365" Q99576 8982256 MGI:1196284 RGD:621654 TSC22D3 300506 +HGNC:21696 TSC22D4 TSC22 domain family member 4 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "THG-1|TILZ2" TSC22 domain family, member 4 2005-03-01 2015-11-18 2016-10-05 81628 ENSG00000166925 OTTHUMG00000150233 uc003uva.3 BC010406 NM_030935 CCDS5695 Q9Y3Q8 MGI:1926079 RGD:1584380 TSC22D4 611914 +HGNC:28422 TSEN2 tRNA splicing endonuclease subunit 2 protein-coding gene gene with protein product Approved 3p25.2 03p25.2 "SEN2|SEN2L|MGC2776" "tRNA splicing endonuclease 2 homolog (SEN2, S. cerevisiae)|tRNA splicing endonuclease 2 homolog (S. cerevisiae)|TSEN2 tRNA splicing endonuclease subunit" tRNA-splicing endonuclease subunits 776 2005-03-07 2015-11-27 2015-11-27 80746 ENSG00000154743 OTTHUMG00000129765 uc003bxb.4 BC019582 NM_025265 "CCDS2611|CCDS46757|CCDS46758" Q8NCE0 15109492 MGI:2141599 RGD:1309946 TSEN2 608753 169410 +HGNC:43965 TSEN2P1 tRNA splicing endonuclease subunit 2 pseudogene 1 pseudogene pseudogene Approved 4q34.2 04q34.2 "tRNA splicing endonuclease 2 homolog (S. cerevisiae) pseudogene 1|TSEN2 tRNA splicing endonuclease subunit pseudogene 1" 2012-05-17 2015-11-27 2015-11-27 391718 ENSG00000251174 OTTHUMG00000160763 NG_009835 PGOHUM00000246144 +HGNC:16791 TSEN15 tRNA splicing endonuclease subunit 15 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 C1orf19 "chromosome 1 open reading frame 19|tRNA splicing endonuclease 15 homolog (S. cerevisiae)|TSEN15 tRNA splicing endonuclease subunit" tRNA-splicing endonuclease subunits 776 2001-10-08 2008-06-12 2015-11-27 2016-10-05 116461 ENSG00000198860 OTTHUMG00000035461 uc001gqt.5 AF288394 XM_017000228 "CCDS1361|CCDS44286|CCDS72993" Q8WW01 "11318611|17166513" MGI:1913887 RGD:1308584 TSEN15 608756 461308 +HGNC:43962 TSEN15P1 tRNA splicing endonuclease subunit 15 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 "tRNA splicing endonuclease 15 homolog (S. cerevisiae) pseudogene 1|TSEN15 tRNA splicing endonuclease subunit pseudogene 1" 2012-05-17 2015-11-27 2015-11-27 100288179 ENSG00000230865 OTTHUMG00000059289 NG_030099 PGOHUM00000237247 +HGNC:43963 TSEN15P2 tRNA splicing endonuclease subunit 15 pseudogene 2 pseudogene pseudogene Approved 1p32.3 01p32.3 "tRNA splicing endonuclease 15 homolog (S. cerevisiae) pseudogene 2|TSEN15 tRNA splicing endonuclease subunit pseudogene 2" 2012-05-17 2015-11-27 2015-11-27 106480781 ENSG00000230604 OTTHUMG00000008626 NG_044015 PGOHUM00000244717 +HGNC:43964 TSEN15P3 tRNA splicing endonuclease subunit 15 pseudogene 3 pseudogene pseudogene Approved 7p15.3 07p15.3 "tRNA splicing endonuclease 15 homolog (S. cerevisiae) pseudogene 3|TSEN15 tRNA splicing endonuclease subunit pseudogene 3" 2012-05-17 2015-11-27 2015-11-27 105375192 ENSG00000234922 OTTHUMG00000152597 NG_046697 PGOHUM00000232622 +HGNC:15506 TSEN34 tRNA splicing endonuclease subunit 34 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "SEN34|SEN34L" LENG5 "leukocyte receptor cluster (LRC) member 5|tRNA splicing endonuclease 34 homolog (SEN34, S. cerevisiae)|tRNA splicing endonuclease 34 homolog (S. cerevisiae)|TSEN34 tRNA splicing endonuclease subunit" tRNA-splicing endonuclease subunits 776 2004-01-28 2005-03-12 2015-11-27 2016-10-05 79042 ENSG00000170892 OTTHUMG00000066515 uc032icq.1 AF211970 NM_024075 "CCDS42609|CCDS74446" Q9BSV6 "10941842|15109492" MGI:1913328 RGD:1359564 TSEN34 608754 169405 +HGNC:27561 TSEN54 tRNA splicing endonuclease subunit 54 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "SEN54|SEN54L" "tRNA splicing endonuclease 54 homolog (SEN54, S. cerevisiae)|tRNA splicing endonuclease 54 homolog (S. cerevisiae)|TSEN54 tRNA splicing endonuclease subunit" tRNA-splicing endonuclease subunits 776 2005-03-11 2015-11-27 2015-11-27 283989 ENSG00000182173 OTTHUMG00000179684 uc002jof.2 AK097583 NM_207346 CCDS11724 Q7Z6J9 15109492 MGI:1923515 RGD:1597379 TSEN54 608755 168268 +HGNC:12367 TSFM Ts translation elongation factor, mitochondrial protein-coding gene gene with protein product Approved 12q14.1 12q14.1 "EF-Tsmt|EF-TS" 1999-05-25 2014-11-18 10102 ENSG00000123297 OTTHUMG00000153042 uc001sqi.4 L37936 NM_005726 "CCDS8958|CCDS53809|CCDS53810|CCDS53811" P43897 7615523 MGI:1913649 RGD:1593058 TSFM 604723 173154 +HGNC:15971 TSG101 tumor susceptibility 101 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 VPS23 TSG10 "tumor susceptibility gene 10|tumor susceptibility gene 101" ESCRT-I 1116 2001-07-20 2013-08-22 2016-10-05 7251 ENSG00000074319 OTTHUMG00000167725 uc001mor.4 U82130 NM_006292 CCDS7842 Q99816 "9019400|9241264" MGI:106581 RGD:3909 TSG101 601387 +HGNC:14927 TSGA10 testis specific 10 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "CEP4L|CT79" cancer/testis antigen 79 2001-03-20 2015-11-12 2015-11-12 80705 ENSG00000135951 OTTHUMG00000130637 uc002szi.5 AF254756 NM_182911 CCDS2037 Q9BZW7 11179690 MGI:2685063 RGD:621142 TSGA10 607166 +HGNC:26555 TSGA10IP testis specific 10 interacting protein protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "FLJ32880|FAM161C" 2004-06-29 2015-11-12 2015-11-12 254187 ENSG00000175513 OTTHUMG00000166753 uc031xsf.2 AK057442 NM_152762 CCDS66138 Q3SY00 14702039 MGI:1925556 RGD:1302964 TSGA10IP +HGNC:12369 TSGA13 testis specific 13 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 2000-08-11 2015-11-12 2016-10-05 114960 ENSG00000213265 OTTHUMG00000154999 uc003vqj.4 AK093329 NM_052933 CCDS5824 Q96PP4 MGI:1891413 RGD:1584118 TSGA13 +HGNC:12372 TSHB thyroid stimulating hormone beta protein-coding gene gene with protein product Approved 1p13.2 01p13.2 Endogenous ligands 542 2001-06-22 2016-01-12 2016-10-05 7252 ENSG00000134200 OTTHUMG00000011881 uc001efs.2 BC069298 NM_000549 CCDS880 P01222 "2457586|3243440" MGI:98848 RGD:3910 TSHB 188540 166731 +HGNC:12373 TSHR thyroid stimulating hormone receptor protein-coding gene gene with protein product Approved 14q24-q31 14q24-q31 LGR3 Glycoprotein hormone receptors 199 1990-03-05 2016-10-12 7253 ENSG00000165409 OTTHUMG00000171429 uc059dxz.1 AY429111 NM_000369 "CCDS9872|CCDS32131|CCDS55935" P16473 "2558651|2610690" MGI:98849 RGD:9264819 "TSH Receptor mutation database|http://endokrinologie.uniklinikum-leipzig.de/tsh/|LRG_523|http://www.lrg-sequence.org/LRG/LRG_523" TSHR 603372 120320 objectId:255 +HGNC:12374 TSHRL1 thyroid stimulating hormone receptor like 1 other unknown Approved 1q 01q 1988-05-11 2016-01-12 2016-01-12 7254 +HGNC:12375 TSHRL2 thyroid stimulating hormone receptor like 2 other unknown Approved 8 08 1988-05-11 2016-01-12 2016-01-12 7255 +HGNC:12376 TSHRL3 thyroid stimulating hormone receptor like 3 other unknown Approved 10 10 1988-05-11 2016-01-12 2016-01-12 7256 +HGNC:10669 TSHZ1 teashirt zinc finger homeobox 1 protein-coding gene gene with protein product Approved 18q22.3 18q22.3 "NY-CO-33|TSH1" SDCCAG33 "serologically defined colon cancer antigen 33|teashirt zinc finger 1|teashirt family zinc finger 1" "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 1999-07-23 2006-03-14 2007-07-16 2014-11-18 10194 ENSG00000179981 OTTHUMG00000132859 uc002lly.4 AF039698 NM_005786 "CCDS12009|CCDS77199" Q6ZSZ6 17586487 MGI:1346031 RGD:1311684 TSHZ1 614427 8614 292088 +HGNC:13010 TSHZ2 teashirt zinc finger homeobox 2 protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "ZABC2|OVC10-2|TSH2" "C20orf17|ZNF218" "chromosome 20 open reading frame 17|zinc finger protein 218|teashirt family zinc finger 2" "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 1998-08-13 2006-03-14 2007-07-16 2014-11-18 128553 ENSG00000182463 OTTHUMG00000033058 uc002xwo.3 AF230201 NM_173485 "CCDS33490|CCDS54474" Q9NRE2 9671742 MGI:2153084 RGD:6490867 TSHZ2 614118 8615 +HGNC:30700 TSHZ3 teashirt zinc finger homeobox 3 protein-coding gene gene with protein product Approved 19q12 19q12 "KIAA1474|TSH3" teashirt 3 ZNF537 "zinc finger protein 537|teashirt family zinc finger 3" "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 2004-02-10 2006-03-14 2007-07-16 2016-10-05 57616 ENSG00000121297 OTTHUMG00000150184 uc002nsy.5 AL136805 NM_020856 CCDS12421 Q63HK5 MGI:2442819 RGD:1306322 TSHZ3 614119 8616 +HGNC:12377 TSIX TSIX transcript, XIST antisense RNA non-coding RNA RNA, long non-coding Approved Xq13.2 Xq13.2 "NCRNA00013|XIST-AS1|LINC00013" "XIST antisense RNA (non-protein coding)|long intergenic non-protein coding RNA 13" "X (inactive)-specific transcript, antisense|TSIX transcript, XIST antisense RNA (non-protein coding)" Long non-coding RNAs 788 1999-09-28 2012-08-15 2014-10-22 9383 ENSG00000270641 OTTHUMG00000184725 uc004ebn.2 NR_003255 10192391 300181 tsix +HGNC:30719 TSKS testis specific serine kinase substrate protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "TSSKS|PPP1R161" protein phosphatase 1, regulatory subunit 161 Protein phosphatase 1 regulatory subunits 694 2009-02-23 2016-01-26 2016-01-26 60385 ENSG00000126467 OTTHUMG00000183249 uc002ppm.4 BC058862 NM_021733 CCDS12780 Q9UJT2 "11444856|18495105" MGI:1347560 RGD:727784 TSKS 608253 +HGNC:28850 TSKU tsukushi, small leucine rich proteoglycan protein-coding gene gene with protein product Approved 11q13.5 11q13.5 "E2IG4|TSK" LRRC54 "leucine rich repeat containing 54|tsukushin|tsukushi small leucine rich proteoglycan homolog (Xenopus laevis)" 2005-09-13 2006-11-21 2012-12-05 2014-11-18 25987 ENSG00000182704 OTTHUMG00000165238 uc031qcw.2 AK075476 NM_015516 CCDS8246 Q8WUA8 "11085516|19710929|22880013" MGI:2443855 RGD:1359311 TSKU 608015 +HGNC:30743 TSLP thymic stromal lymphopoietin protein-coding gene gene with protein product Approved 5q22.1 05q22.1 2007-08-24 2014-11-18 85480 ENSG00000145777 OTTHUMG00000128791 uc003kpb.3 BC040592 NM_033035 CCDS4101 Q969D9 "11418668|11480573" MGI:1855696 RGD:1586479 TSLP 607003 +HGNC:12379 TSN translin protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "TRSLN|BCLF-1|REHF-1" recombination hotspot associated factor 1997-05-15 2016-10-05 7247 ENSG00000211460 OTTHUMG00000153334 uc002tnl.4 X78627 NM_004622 "CCDS33284|CCDS58723" Q15631 "7947454|9244443" MGI:109263 RGD:621107 TSN 600575 +HGNC:26437 TSNARE1 t-SNARE domain containing 1 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FLJ31164 2005-08-18 2014-11-19 203062 ENSG00000171045 OTTHUMG00000164867 uc003ywk.4 NM_145003 "CCDS6384|CCDS78369" Q96NA8 14702039 TSNARE1 +HGNC:12380 TSNAX translin associated factor X protein-coding gene gene with protein product Approved 1q42.2 01q42.2 TRAX 1997-05-15 2016-05-31 2016-05-31 7257 ENSG00000116918 OTTHUMG00000039486 uc001huw.4 X95073 NM_005999 CCDS1596 Q99598 9013868 MGI:1855672 RGD:621574 TSNAX 602964 +HGNC:49177 TSNAX-DISC1 TSNAX-DISC1 readthrough (NMD candidate) other readthrough Approved 1q42.2 01q42.2 2013-09-24 2013-09-24 100303453 ENSG00000270106 OTTHUMG00000183905 NR_028393 +HGNC:18586 TSNAXIP1 translin associated factor X interacting protein 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 TXI1 translin-associated factor X interacting protein 1 2003-03-12 2016-03-29 2016-10-05 55815 ENSG00000102904 OTTHUMG00000137545 uc002euj.5 AF132730 NM_018430 "CCDS10846|CCDS73903|CCDS73904" Q2TAA8 12036294 MGI:1919486 RGD:1565341 TSNAXIP1 607720 +HGNC:20657 TSPAN1 tetraspanin 1 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 "TSPAN-1|NET-1" Tetraspanins 768 2005-01-06 2016-10-05 10103 ENSG00000117472 OTTHUMG00000007602 uc001cpd.4 BC013404 NM_005727 CCDS530 O60635 "9714763|10719184" MGI:1914055 RGD:1303308 TSPAN1 613170 +HGNC:20659 TSPAN2 tetraspanin 2 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "TSPAN-2|TSN2|FLJ12082" Tetraspanins 768 2005-01-06 2016-10-05 10100 ENSG00000134198 OTTHUMG00000011878 uc001eft.5 AF054839 NM_005725 "CCDS881|CCDS76193" O60636 "9714763|11739647" MGI:1917997 RGD:620982 TSPAN2 613133 +HGNC:17752 TSPAN3 tetraspanin 3 protein-coding gene gene with protein product Approved 15q24.3 15q24.3 "TM4-A|TSPAN-3" TM4SF8 transmembrane 4 superfamily member 8 Tetraspanins 768 2003-07-21 2005-03-21 2005-03-21 2016-10-05 10099 ENSG00000140391 OTTHUMG00000143728 uc002bcj.4 NM_005724 "CCDS10292|CCDS10293|CCDS53963" O60637 MGI:1928098 RGD:1359444 TSPAN3 613134 +HGNC:11859 TSPAN4 tetraspanin 4 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "NAG-2|TSPAN-4|TETRASPAN" TM4SF7 transmembrane 4 superfamily member 7 Tetraspanins 768 1998-06-10 2005-03-21 2005-03-21 2014-11-19 7106 ENSG00000214063 OTTHUMG00000133305 uc001lsd.2 AF022813 XM_011520337 "CCDS7721|CCDS41589" O14817 9360996 MGI:1928097 RGD:1305810 TSPAN4 602644 +HGNC:17753 TSPAN5 tetraspanin 5 protein-coding gene gene with protein product Approved 4q23 04q23 "Tspan-5|NET-4" TM4SF9 transmembrane 4 superfamily member 9 Tetraspanins 768 2003-07-21 2005-03-21 2005-03-21 2016-10-05 10098 ENSG00000168785 OTTHUMG00000131008 uc003hub.4 NM_005723 CCDS3646 P62079 MGI:1928096 RGD:1303176 TSPAN5 613136 +HGNC:11858 TSPAN6 tetraspanin 6 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "T245|TSPAN-6" TM4SF6 transmembrane 4 superfamily member 6 Tetraspanins 768 1998-03-20 2005-03-21 2005-03-21 2016-10-05 7105 ENSG00000000003 OTTHUMG00000022002 uc004ega.3 AF043906 NM_003270 "CCDS14470|CCDS76001" O43657 9782095 MGI:1926264 RGD:1560160 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TSPAN6 TSPAN6 300191 +HGNC:11854 TSPAN7 tetraspanin 7 protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "DXS1692E|TALLA-1|A15|CD231" "MXS1|TM4SF2|MRX58" "transmembrane 4 superfamily member 2|mental retardation, X-linked 58" "X-linked mental retardation|CD molecules|Tetraspanins" "103|471|768" 1993-12-08 2005-03-21 2005-03-21 2014-11-19 7102 ENSG00000156298 OTTHUMG00000024090 uc004deg.5 D29808 NM_004615 CCDS14248 P41732 12070254 MGI:1298407 RGD:1589725 TSPAN7 300096 168155 CD231 +HGNC:11855 TSPAN8 tetraspanin 8 protein-coding gene gene with protein product Approved 12q21.1 12q21.1 CO-029 TM4SF3 transmembrane 4 superfamily member 3 Tetraspanins 768 1997-10-16 2005-03-21 2005-03-21 2016-01-15 7103 ENSG00000127324 OTTHUMG00000169542 uc001swk.2 M35252 NM_004616 CCDS8999 P19075 2395876 MGI:2384918 RGD:621783 TSPAN8 600769 +HGNC:21640 TSPAN9 tetraspanin 9 protein-coding gene gene with protein product Approved 12p13.33-p13.32 12p13.33-p13.32 NET-5 Tetraspanins 768 2005-03-21 2016-10-11 10867 ENSG00000011105 OTTHUMG00000150333 uc021qtd.1 AF089749 NM_006675 CCDS8520 O75954 "10719184|11739647" MGI:1924558 RGD:1304740 TSPAN9 613137 +HGNC:41462 TSPAN9-IT1 TSPAN9 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 12p13.33 12p13.33 TSPAN9 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874356 ENSG00000256197 OTTHUMG00000168180 uc058jxh.1 +HGNC:29942 TSPAN10 tetraspanin 10 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 OCSP oculospanin Tetraspanins 768 2005-03-21 2014-11-18 83882 ENSG00000182612 OTTHUMG00000178037 uc021ufc.3 BC032802 NM_031945 CCDS77130 Q9H1Z9 12107410 MGI:2384781 RGD:1590062 TSPAN10 +HGNC:30795 TSPAN11 tetraspanin 11 protein-coding gene gene with protein product Approved 12p11.21 12p11.21 Tetraspanins 768 2005-03-21 2014-11-19 441631 ENSG00000110900 OTTHUMG00000168484 uc001rjp.4 XM_497334 CCDS31765 A1L157 MGI:1915748 RGD:1305424 TSPAN11 +HGNC:21641 TSPAN12 tetraspanin 12 protein-coding gene gene with protein product Approved 7q31.31 07q31.31 NET-2 TM4SF12 transmembrane 4 superfamily member 12 Tetraspanins 768 2003-07-21 2005-03-21 2005-03-21 2015-09-08 23554 ENSG00000106025 OTTHUMG00000156980 uc003vjk.4 AF124522 NM_012338 CCDS5777 O95859 MGI:1889818 RGD:1311102 TSPAN12 613138 225339 +HGNC:21643 TSPAN13 tetraspanin 13 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 NET-6 TM4SF13 transmembrane 4 superfamily member 13 Tetraspanins 768 2003-07-21 2005-03-21 2005-03-21 2016-10-05 27075 ENSG00000106537 OTTHUMG00000022968 uc003stq.4 AF100759 NM_014399 CCDS5363 O95857 MGI:1913359 RGD:1311788 TSPAN13 613139 +HGNC:23303 TSPAN14 tetraspanin 14 protein-coding gene gene with protein product Approved 10q23.1 10q23.1 "DC-TM4F2|MGC11352" TM4SF14 transmembrane 4 superfamily member 14 Tetraspanins 768 2004-10-19 2005-03-21 2005-03-21 2014-11-19 81619 ENSG00000108219 OTTHUMG00000018615 uc001kcj.5 AF311903 NM_030927 "CCDS7369|CCDS44448" Q8NG11 11230166 MGI:1196325 RGD:1305714 TSPAN14 +HGNC:23298 TSPAN15 tetraspanin 15 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 NET-7 TM4SF15 transmembrane 4 superfamily member 15 Tetraspanins 768 2004-10-19 2005-03-21 2005-03-21 2014-11-19 23555 ENSG00000099282 OTTHUMG00000018381 uc001jpo.2 AY358934 NM_012339 CCDS7294 O95858 "11739647|10719184" MGI:1917673 RGD:1588304 TSPAN15 613140 +HGNC:30725 TSPAN16 tetraspanin 16 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "TM4-B|TM-8" TM4SF16 transmembrane 4 superfamily member 16 Tetraspanins 768 2004-10-19 2005-03-21 2005-03-21 2015-09-08 26526 ENSG00000130167 OTTHUMG00000180833 uc032hmt.2 BC029908 NM_012466 "CCDS12256|CCDS62549|CCDS62550" Q9UKR8 10500248 TSPAN16 +HGNC:13594 TSPAN17 tetraspanin 17 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 FBX23 "FBXO23|TM4SF17" F-box only protein 23, transmembrane 4 superfamily member 17 Tetraspanins 768 2000-09-27 2005-03-21 2005-03-21 2016-10-05 26262 ENSG00000048140 OTTHUMG00000163230 uc003meu.4 AF174603 XM_005265876 "CCDS34298|CCDS47346|CCDS54952" Q96FV3 "10531035|10531037" MGI:1921507 RGD:1311167 TSPAN17 +HGNC:20660 TSPAN18 tetraspanin 18 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 TSPAN Tetraspanins 768 2005-03-21 2016-01-15 90139 ENSG00000157570 OTTHUMG00000163883 uc058ark.1 AY358087 NM_130783 CCDS7910 Q96SJ8 11756464 MGI:1917186 RGD:1560411 TSPAN18 +HGNC:31886 TSPAN19 tetraspanin 19 protein-coding gene gene with protein product Approved 12q21.31 12q21.31 Tetraspanins 768 2005-03-21 2015-09-08 144448 ENSG00000231738 OTTHUMG00000166181 uc009zsj.4 NM_001100917 CCDS44949 P0C672 TSPAN19 +HGNC:10539 TSPAN31 tetraspanin 31 protein-coding gene gene with protein product Approved 12q13-q14 12q13-q14 SAS sarcoma amplified sequence Tetraspanins 768 1991-08-08 2005-08-16 2005-08-16 2015-09-08 6302 ENSG00000135452 OTTHUMG00000170381 uc001spt.4 XM_005269074 CCDS8952 Q12999 MGI:1914375 RGD:1309876 TSPAN31 181035 +HGNC:13410 TSPAN32 tetraspanin 32 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 "TSSC6|PHEMX" pan-hematopoietic expression Tetraspanins 768 2000-11-29 2005-08-16 2005-08-16 2016-10-05 10077 ENSG00000064201 OTTHUMG00000009762 uc001lvy.2 AF176070 NM_139024 CCDS7733 Q96QS1 "10072438|10950922" MGI:1350360 RGD:1308721 TSPAN32 603853 +HGNC:28743 TSPAN33 tetraspanin 33 protein-coding gene gene with protein product Approved 7q32.1 07q32.1 "MGC50844|Penumbra" Tetraspanins 768 2005-08-30 2016-10-05 340348 ENSG00000158457 OTTHUMG00000158420 uc033ahb.2 NM_178562 CCDS5810 Q86UF1 "16213355|16242907" MGI:1919012 RGD:1560915 TSPAN33 610120 +HGNC:1268 TSPEAR thrombospondin type laminin G domain and EAR repeats protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "MGC11251|TSP-EAR" "C21orf29|DFNB98" "chromosome 21 open reading frame 29|deafness, autosomal recessive 98" 2000-05-23 2011-01-25 2016-05-24 2016-05-24 54084 ENSG00000175894 OTTHUMG00000041215 uc002zfe.1 AJ487962 NM_144991 "CCDS13712|CCDS74801" Q8WU66 "12095917|22678063" MGI:2671932 RGD:1563108 TSPEAR 612920 314938 +HGNC:1271 TSPEAR-AS1 TSPEAR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 TSPEAR antisense RNA 1 (non-protein coding) 2000-05-23 2012-08-15 2012-10-12 54082 ENSG00000235890 OTTHUMG00000041216 uc062asq.1 NR_103707 +HGNC:16428 TSPEAR-AS2 TSPEAR antisense RNA 2 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 C21orf90 chromosome 21 open reading frame 90 2001-08-24 2014-10-01 2014-10-01 2014-11-19 114043 ENSG00000182912 OTTHUMG00000041217 AF426270 NR_026547 P59090 12036297 +HGNC:1158 TSPO translocator protein protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "PBR|MBR|PKBS|mDRC|DBI|IBP|pk18" peripheral-type benzodiazepine receptor/recognition site BZRP "benzodiazapine receptor (peripheral)|translocator protein (18kDa)" 1991-05-25 2006-07-12 2015-11-30 2016-10-05 706 ENSG00000100300 OTTHUMG00000150573 uc003bdn.4 AF075589 NM_007311 CCDS33661 "B1AH88|P30536" "1326278|1847678|16822554" MGI:88222 RGD:2228 TSPO 109610 objectId:2879 +HGNC:21256 TSPO2 translocator protein 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 dJ34B21.2 similar to RIKEN cDNA 2510027D20 BZRPL1 benzodiazapine receptor (peripheral)-like 1 2003-11-26 2009-09-04 2009-09-04 2014-11-19 222642 ENSG00000112212 OTTHUMG00000014666 uc003opj.4 NM_001010873.2 CCDS34444 Q5TGU0 19729679 MGI:1917276 RGD:1594018 TSPO2 +HGNC:16831 TSPOAP1 TSPO associated protein 1 protein-coding gene gene with protein product Approved 17q22 17q22 "PRAX-1|KIAA0612|RIM-BP1|RIMBP1" BZRAP1 benzodiazepine receptor (peripheral) associated protein 1 Fibronectin type III domain containing 555 2003-03-10 2016-03-24 2016-03-24 2016-03-24 9256 ENSG00000005379 OTTHUMG00000178923 uc002ivx.6 AB014512 NM_004758 "CCDS11605|CCDS45742" O95153 "9734811|9915832" MGI:2450877 RGD:708563 610764 +HGNC:44148 TSPOAP1-AS1 TSPOAP1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 17q22 17q22 BZRAP1-AS1 BZRAP1 antisense RNA 1 (non-protein coding) 2012-06-30 2016-06-07 2016-06-07 2016-06-07 100506779 ENSG00000265148 OTTHUMG00000178924 uc021uan.2 AK090885 NR_038410 +HGNC:12381 TSPY1 testis specific protein, Y-linked 1 protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 CT78 cancer/testis antigen 78 TSPY testis specific protein, Y-linked 1989-06-30 2004-04-07 2004-04-05 2015-09-10 7258 ENSG00000258992 OTTHUMG00000171452 uc065cqy.1 NM_003308 "CCDS48205|CCDS76071" Q01534 RGD:3912 TSPY1 480100 285739 +HGNC:23924 TSPY2 testis specific protein, Y-linked 2 protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 TSPYQ1 2004-04-05 2015-09-08 64591 ENSG00000168757 OTTHUMG00000040957 uc004fqr.2 AF106331 NM_022573 CCDS35465 A6NKD2 10773691 TSPY2 +HGNC:33876 TSPY3 testis specific protein, Y-linked 3 protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 CT78 2009-01-27 2015-09-08 728137 ENSG00000228927 OTTHUMG00000041535 uc033feo.1 BC075016 NM_001077697 CCDS48204 P0CV98 TSPY3 +HGNC:37287 TSPY4 testis specific protein, Y-linked 4 protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 2009-09-23 2015-09-08 728395 ENSG00000233803 OTTHUMG00000041529 uc022cja.3 AK093413 NM_001164471 CCDS48202 P0CV99 TSPY4 +HGNC:23907 TSPY5P testis specific protein, Y-linked 5, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 TSPYP5 testis specific protein, Y-linked pseudogene 5 2004-04-05 2009-10-16 2011-04-15 2014-11-18 379027 ENSG00000225685 OTTHUMG00000041615 NG_003093 12815422 PGOHUM00000233723 +HGNC:34039 TSPY6P testis specific protein, Y-linked 6, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 TSPYP6 testis specific protein, Y-linked pseudogene 6 2008-04-02 2009-10-16 2011-04-15 2015-08-17 653174 ENSG00000270073 OTTHUMG00000041522 XR_016233 PGOHUM00000305631 +HGNC:34040 TSPY7P testis specific protein, Y-linked 7, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 TSPYP7 testis specific protein, Y-linked pseudogene 7 2008-04-02 2009-10-16 2011-04-15 2011-04-15 653288 ENSG00000188656 OTTHUMG00000041533 XR_038447 +HGNC:37471 TSPY8 testis specific protein, Y-linked 8 protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 2009-10-16 2015-09-08 728403 ENSG00000229549 OTTHUMG00000041531 uc004frr.3 XM_001127004 CCDS59533 P0CW00 TSPY8 +HGNC:37472 TSPY9P testis specific protein, Y-linked 9, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 TSPY9 testis specific protein, Y-linked 9 2009-10-16 2012-07-12 2012-07-12 2015-09-30 728132 ENSG00000238074 OTTHUMG00000187491 uc033fep.2 NG_021936 +HGNC:37473 TSPY10 testis specific protein, Y-linked 10 protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 2009-10-16 2015-09-08 100289087 ENSG00000236424 OTTHUMG00000041524 uc033feq.1 XM_002344198 "CCDS65365|CCDS83519" P0CW01 TSPY10 +HGNC:23903 TSPY11P testis specific protein, Y-linked 11, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 TSPYP1 "testis specific protein, Y-linked pseudogene 1|testis specific protein, Y-linked 11 (pseudogene)" 2004-04-05 2009-10-16 2010-10-28 2014-11-19 347584 ENSG00000238235 OTTHUMG00000040946 NG_003077 12815422 PGOHUM00000233895 +HGNC:23904 TSPY12P testis specific protein, Y-linked 12, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 TSPYP2 "testis specific protein, Y-linked pseudogene 2|testis specific protein, Y-linked 12 (pseudogene)" 2004-04-05 2009-10-16 2010-10-28 2014-11-19 377997 ENSG00000236435 OTTHUMG00000041014 NG_003078 12815422 PGOHUM00000233682 +HGNC:23905 TSPY13P testis specific protein, Y-linked 13, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 TSPYP3 "testis specific protein, Y-linked pseudogene 3|testis specific protein, Y-linked 13 (pseudogene)" 2004-04-05 2009-10-16 2010-10-28 2014-11-19 378001 ENSG00000187657 OTTHUMG00000041595 NG_003079 12815422 PGOHUM00000233719 +HGNC:23906 TSPY14P testis specific protein, Y-linked 14, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 TSPYP4 "testis specific protein, Y-linked pseudogene 4|testis specific protein, Y-linked 14 (pseudogene)" 2004-04-05 2009-10-16 2010-10-28 2014-11-19 378013 ENSG00000169849 OTTHUMG00000042042 NG_003080 12815422 +HGNC:37474 TSPY15P testis specific protein, Y-linked 15, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 testis specific protein, Y-linked 15 (pseudogene) 2009-10-16 2010-10-28 2014-11-19 642631 ENSG00000236786 OTTHUMG00000041526 NG_016162 +HGNC:37712 TSPY16P testis specific protein, Y-linked 16, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 testis specific protein, Y-linked 16 (pseudogene) 2010-02-04 2010-10-28 2014-11-19 727969 ENSG00000226223 OTTHUMG00000041593 XM_001714044 PGOHUM00000233715 +HGNC:37713 TSPY17P testis specific protein, Y-linked 17, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 testis specific protein, Y-linked 17 (pseudogene) 2010-02-04 2010-10-28 2014-11-19 100132124 ENSG00000232620 OTTHUMG00000036523 NG_029070 PGOHUM00000233900 +HGNC:37725 TSPY18P testis specific protein, Y-linked 18, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 testis specific protein, Y-linked 18 (pseudogene) 2010-02-05 2010-10-28 2014-11-19 642796 ENSG00000231874 OTTHUMG00000041594 NG_016579 PGOHUM00000233926 +HGNC:37998 TSPY19P testis specific protein, Y-linked 19, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 testis specific protein, Y-linked 19 (pseudogene) 2010-03-17 2010-10-28 2014-11-19 100132504 ENSG00000234583 OTTHUMG00000040953 NG_022996 PGOHUM00000233678 +HGNC:38093 TSPY20P testis specific protein, Y-linked 20, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 testis specific protein, Y-linked 20 (pseudogene) 2010-04-14 2010-10-28 2014-11-19 100130848 ENSG00000243643 OTTHUMG00000041614 NG_022960 +HGNC:38101 TSPY21P testis specific protein, Y-linked 21, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 testis specific protein, Y-linked 21 (pseudogene) 2010-04-16 2010-10-28 2010-10-28 100287055 ENSG00000237902 OTTHUMG00000043591 NG_022976 +HGNC:38522 TSPY22P testis specific protein, Y-linked 22, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 testis specific protein, Y-linked 22 (pseudogene) 2010-06-07 2010-10-28 2014-11-19 100286996 ENSG00000229940 OTTHUMG00000043587 NG_022955 +HGNC:38594 TSPY23P testis specific protein, Y-linked 23, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 testis specific protein, Y-linked 23 (pseudogene) 2010-06-28 2010-10-28 2014-11-19 100286964 ENSG00000229159 OTTHUMG00000043596 NG_029413 PGOHUM00000234023 +HGNC:38725 TSPY24P testis specific protein, Y-linked 24, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 testis specific protein, Y-linked 24 (pseudogene) 2010-07-28 2010-10-28 2014-11-19 100874287 ENSG00000215601 OTTHUMG00000041266 NG_032212 +HGNC:38726 TSPY25P testis specific protein, Y-linked 25, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 testis specific protein, Y-linked 25 (pseudogene) 2010-07-28 2010-10-28 2014-11-18 100874288 ENSG00000234110 OTTHUMG00000041527 NG_032213 +HGNC:16256 TSPY26P testis specific protein, Y-linked 26, pseudogene pseudogene pseudogene Approved 20q11.21 20q11.21 bA392M18.1 TSPYL3 "TSPY-like 3|TSPY-like 3 (pseudogene)" 2001-07-17 2010-10-28 2010-10-28 2014-11-19 128854 ENSG00000235217 OTTHUMG00000032212 NM_178465 Q9H489 RGD:1310192 PGOHUM00000247511 +HGNC:12382 TSPYL1 TSPY like 1 protein-coding gene gene with protein product Approved 6q22.1 06q22.1 TSPYL TSPY-like 1998-04-20 2004-04-07 2016-07-01 2016-10-12 7259 ENSG00000189241 OTTHUMG00000015427 uc003pwp.5 AF042181 NM_003309 CCDS34518 Q9H0U9 9730615 MGI:1298395 RGD:1307726 LRG_862|http://www.lrg-sequence.org/LRG/LRG_862 TSPYL1 604714 173211 +HGNC:24358 TSPYL2 TSPY like 2 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "SE20-4|HRIHFB2216|CTCL|DENTT|CDA1|CINAP|TSPX" 2004-09-30 2016-07-01 2016-10-05 64061 ENSG00000184205 OTTHUMG00000021597 uc004drw.4 AF273046 NM_022117 CCDS14350 Q9H2G4 "11318608|11395479" MGI:106244 RGD:1563283 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=TSPYL2 TSPYL2 300564 +HGNC:21559 TSPYL4 TSPY like 4 protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "dJ486I3.2|KIAA0721" 2003-06-24 2016-07-01 2016-07-01 23270 ENSG00000187189 OTTHUMG00000015429 uc003pwn.4 NM_021648 CCDS5106 Q9UJ04 MGI:106393 RGD:1306653 TSPYL4 +HGNC:29367 TSPYL5 TSPY like 5 protein-coding gene gene with protein product Approved 8q22.1 08q22.1 KIAA1750 2004-04-05 2016-07-01 2016-07-01 85453 ENSG00000180543 OTTHUMG00000164857 uc003yhy.4 AB051537 NM_033512 CCDS34927 Q86VY4 11214970 MGI:2442458 RGD:1311262 TSPYL5 614721 +HGNC:14521 TSPYL6 TSPY like 6 protein-coding gene gene with protein product Approved 2p16.2 02p16.2 2004-08-18 2016-07-01 2016-10-05 388951 ENSG00000178021 OTTHUMG00000151823 uc002rxr.3 AK097417 XM_371494 CCDS42682 Q8N831 TSPYL6 +HGNC:25542 TSR1 TSR1, ribosome maturation factor protein-coding gene gene with protein product Approved 17p13.3 17p13.3 FLJ10534 TSR1, 20S rRNA accumulation, homolog (yeast) 2005-12-16 2016-04-14 2016-04-14 55720 ENSG00000167721 OTTHUMG00000177636 uc002fuj.4 AK026565 NM_018128 CCDS32525 Q2NL82 "10718198|20805244" MGI:2144566 RGD:2322150 TSR1 611214 +HGNC:25455 TSR2 TSR2, ribosome maturation factor protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "DT1P1A10|RP1-112K5.2|WGG1" WGG motif containing 1 TSR2, 20S rRNA accumulation, homolog (S. cerevisiae) 2006-07-03 2016-04-22 2016-04-22 90121 ENSG00000158526 OTTHUMG00000021628 uc004dte.5 BC007699 NM_058163 CCDS14358 Q969E8 9417904 MGI:1916749 RGD:1562416 TSR2 300945 412855 +HGNC:14175 TSR3 TSR3, acp transferase ribosome maturation factor protein-coding gene gene with protein product Approved 16p13.3 16p13.3 MGC24381 C16orf42 "chromosome 16 open reading frame 42|TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)" 2000-12-21 2012-06-06 2016-04-22 2016-04-22 115939 ENSG00000007520 OTTHUMG00000047834 uc002cll.4 BC013943 NM_001001410 CCDS10435 Q9UJK0 "12477932|27084949" MGI:1915577 RGD:1565744 617058 +HGNC:12383 TSSC1 tumor suppressing subtransferable candidate 1 protein-coding gene gene with protein product Approved 2p25.3 02p25.3 WD repeat domain containing 362 1998-06-22 2014-11-19 7260 ENSG00000032389 OTTHUMG00000090329 uc002qxj.3 AF019952 NM_003310 "CCDS1651|CCDS82416" Q53HC9 "9403053|9925925" MGI:1289332 RGD:1305817 TSSC1 608998 +HGNC:41392 TSSC1-IT1 TSSC1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2p25.3 02p25.3 TSSC1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874301 ENSG00000224885 OTTHUMG00000151430 uc061gdt.1 +HGNC:12384 TSSC2 tumor suppressing subtransferable candidate 2 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 "tumor-supressing STF cDNA 2|asparagine-linked glycosylation 1 homolog (yeast, beta-1,4-mannosyltransferase) (ALG1) pseudogene" tumor suppressing subtransferable candidate 2 1998-06-22 2008-06-30 2014-11-18 650368 ENSG00000223756 OTTHUMG00000011705 NR_024248 9403053 608999 +HGNC:12386 TSSC4 tumor suppressing subtransferable candidate 4 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 2000-04-13 2014-11-19 10078 ENSG00000184281 OTTHUMG00000009895 uc001lwk.4 AF125568 NM_005706 "CCDS7735|CCDS73241" Q9Y5U2 10072438 MGI:1861712 RGD:1307043 TSSC4 603852 +HGNC:11400 TSSK1A testis specific serine kinase 1A, pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 "TSSK1|SPOGA1|TSSK1AP" "STK22A|TSSK7P" "serine/threonine kinase 22A (spermiogenesis associated)|testis-specific serine kinase 7 pseudogene" 1999-10-29 2007-01-30 2016-01-26 2016-01-26 23752 ENSG00000231086 OTTHUMG00000150125 L77570 NG_004670 10591208 MGI:1347557 PGOHUM00000246404 +HGNC:14968 TSSK1B testis specific serine kinase 1B protein-coding gene gene with protein product Approved 5q22.2 05q22.2 "SPOGA4|FKSG81" "STK22D|TSSK1" "serine/threonine kinase 22D (spermiogenesis associated)|testis-specific serine kinase 1" 2001-04-05 2007-01-30 2016-01-26 2016-01-26 83942 ENSG00000212122 OTTHUMG00000128835 uc003kqm.2 AF348076 NM_032028 CCDS4112 Q9BXA7 15044604 MGI:1347557 RGD:1307352 TSSK1B 610709 objectId:2257 +HGNC:11401 TSSK2 testis specific serine kinase 2 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "SPOGA2|FLJ38613" STK22B serine/threonine kinase 22B (spermiogenesis associated) 1999-10-19 2005-03-12 2016-01-26 2016-01-26 23617 ENSG00000206203 OTTHUMG00000150118 uc002zow.2 AF362953 NM_053006 CCDS13755 Q96PF2 10591208 MGI:1347559 RGD:1304951 TSSK2 610710 objectId:2258 +HGNC:15473 TSSK3 testis specific serine kinase 3 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 SPOGA3 STK22C serine/threonine kinase 22C (spermiogenesis associated) 2001-04-02 2005-03-12 2016-01-26 2016-01-26 81629 ENSG00000162526 OTTHUMG00000007585 uc001bvf.4 AF296450 NM_052841 CCDS362 Q96PN8 11597141 MGI:1929914 RGD:1359231 TSSK3 607660 objectId:2259 +HGNC:19825 TSSK4 testis specific serine kinase 4 protein-coding gene gene with protein product Approved 14q12 14q12 chromosome 14 open reading frame 20 "C14orf20|STK22E" serine/threonine kinase 22E 2002-11-27 2005-03-12 2016-01-26 2016-10-05 283629 ENSG00000139908 OTTHUMG00000029323 uc001wng.4 AF542390 NM_174944 "CCDS9618|CCDS53890|CCDS76662" Q6SA08 MGI:1918349 RGD:1560814 TSSK4 610711 objectId:2260 +HGNC:31931 TSSK5P testis specific serine kinase 5, pseudogene pseudogene pseudogene Approved 8q24.3 08q24.3 TSSKps1 "TSSK5P2|TSSK5P1" "testis-specific serine kinase 5 pseudogene 2|testis-specific serine kinase 5 pseudogene 1" 2005-03-10 2014-06-19 2016-01-26 2016-01-26 648630 ENSG00000227473 OTTHUMG00000154993 NG_017084 +HGNC:30410 TSSK6 testis specific serine kinase 6 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "SSTK|FLJ24002|CT72" cancer/testis antigen 72 2005-03-10 2016-01-26 2016-01-26 83983 ENSG00000178093 OTTHUMG00000182146 uc002nmr.4 AK172841 NM_032037 CCDS12403 Q9BXA6 15044604 MGI:2148775 RGD:1559764 TSSK6 610712 objectId:2261 +HGNC:12388 TST thiosulfate sulfurtransferase protein-coding gene gene with protein product Approved 22q12.3 22q12.3 RDS rhodanese thiosulfate sulfurtransferase (rhodanese) 1992-08-25 2016-01-18 2016-10-05 7263 ENSG00000128311 OTTHUMG00000150533 uc031rxn.1 Z73420 NM_003312 CCDS13938 Q16762 1953758 MGI:98852 RGD:3913 TST 180370 2.8.1.1 +HGNC:12390 TSTA3 tissue specific transplantation antigen P35B protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "FX|P35B|SDR4E1" "short chain dehydrogenase/reductase family 4E, member 1|GDP-L-fucose synthase" Short chain dehydrogenase/reductase superfamily 743 1998-03-20 2012-02-22 7264 ENSG00000104522 OTTHUMG00000165159 uc003yzb.3 U58766 NM_003313 CCDS6408 Q13630 "7803801|1348494|19027726" MGI:98857 RGD:1307028 TSTA3 137020 1.1.1.271 +HGNC:35410 TSTD1 thiosulfate sulfurtransferase like domain containing 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 KAT thiosulfate sulfurtransferase (rhodanese)-like domain containing 1 2009-08-12 2016-04-19 2016-04-19 100131187 ENSG00000215845 OTTHUMG00000031476 uc010pjx.3 NM_001113207 "CCDS44257|CCDS44258|CCDS53400" Q8NFU3 12817473 MGI:3648482 RGD:2323815 TSTD1 616041 +HGNC:30087 TSTD2 thiosulfate sulfurtransferase like domain containing 2 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 PP4189 rhodanese like domain containing 2 C9orf97 "chromosome 9 open reading frame 97|thiosulfate sulfurtransferase (rhodanese)-like domain containing 2" 2004-03-11 2009-08-12 2016-04-19 2016-04-19 158427 ENSG00000136925 OTTHUMG00000020328 uc004axn.4 AF258575 NM_139246 CCDS6727 Q5T7W7 12477932 MGI:3039624 RGD:1310893 TSTD2 +HGNC:40910 TSTD3 thiosulfate sulfurtransferase (rhodanese)-like domain containing 3 protein-coding gene gene with protein product Approved 6q16.2 06q16.2 2012-07-04 2015-09-08 100130890 ENSG00000228439 OTTHUMG00000015265 uc063qfw.1 NM_001195131 CCDS83109 H0UI37 MGI:1924282 RGD:1563572 +HGNC:19140 TTBK1 tau tubulin kinase 1 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 KIAA1855 2003-05-28 2014-11-19 84630 ENSG00000146216 OTTHUMG00000014725 uc003ouq.2 AB058758 XM_017011364 CCDS34455 Q5TCY1 11347906 MGI:2147036 RGD:1559518 TTBK1 objectId:2262 +HGNC:19141 TTBK2 tau tubulin kinase 2 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 KIAA0847 SCA11 spinocerebellar ataxia 11 2003-05-28 2015-08-26 146057 ENSG00000128881 OTTHUMG00000175802 uc001zqo.4 AB020654 NM_173500 CCDS42029 Q6IQ55 10048485 MGI:2155779 RGD:1311661 TTBK2 611695 159341 objectId:2263 +HGNC:12391 TTC1 tetratricopeptide repeat domain 1 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 TPR1 Tetratricopeptide repeat domain containing 769 1997-12-12 2016-10-05 7265 ENSG00000113312 OTTHUMG00000130326 uc003lxu.5 U46570 NM_003314 CCDS4348 Q99614 8836031 MGI:1914077 RGD:1359604 TTC1 601963 +HGNC:12393 TTC3 tetratricopeptide repeat domain 3 protein-coding gene gene with protein product Approved 21q22.13 21q22.13 "TPRD|TPRDI|DCRR1|TPRDII|TPRDIII|RNF105" "Ring finger proteins|Tetratricopeptide repeat domain containing" "58|769" 1998-02-11 2016-10-05 7267 ENSG00000182670 OTTHUMG00000086654 uc002yvz.4 D84296 NM_001320704 CCDS13651 P53804 8947847 MGI:1276539 RGD:1308654 TTC3 602259 +HGNC:40595 TTC3-AS1 TTC3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.13 21q22.13 TTC3 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100874006 ENSG00000228677 OTTHUMG00000086658 uc062aaf.1 BF979681 NR_046651 +HGNC:23318 TTC3P1 tetratricopeptide repeat domain 3 pseudogene 1 pseudogene pseudogene Approved Xq13.3 Xq13.3 RNF105L TTC3L tetratricopeptide repeat domain 3-like 2005-04-07 2010-10-15 2010-10-15 2016-10-05 286495 ENSG00000215105 OTTHUMG00000021869 XR_017027 TTC3P1 PGOHUM00000241403 +HGNC:12394 TTC4 tetratricopeptide repeat domain 4 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "MGC5097|FLJ41930" Tetratricopeptide repeat domain containing 769 1998-08-26 2016-10-05 7268 ENSG00000243725 OTTHUMG00000009914 uc001cxx.5 NM_004623 CCDS596 O95801 9933562 MGI:1919604 RGD:1308529 TTC4 606753 +HGNC:12395 TTC4P1 tetratricopeptide repeat domain 4 pseudogene 1 pseudogene pseudogene Approved 7p12.3 07p12.3 TTC4P tetratricopeptide repeat domain 4, pseudogene 1999-10-19 2010-04-19 2010-04-19 2016-10-05 222052 ENSG00000221971 OTTHUMG00000154753 NG_021385 PGOHUM00000232681 +HGNC:19274 TTC5 tetratricopeptide repeat domain 5 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 Strap Tetratricopeptide repeat domain containing 769 2003-11-25 2015-08-26 91875 ENSG00000136319 OTTHUMG00000029506 uc001vwt.5 BC008647 NM_138376 CCDS9546 Q8N0Z6 11511361 MGI:2683584 RGD:1311284 TTC5 +HGNC:19739 TTC6 tetratricopeptide repeat domain 6 protein-coding gene gene with protein product Approved 14q21.1 14q21.1 "NCRNA00291|C14orf25" "non-protein coding RNA 291|chromosome 14 open reading frame 25" Tetratricopeptide repeat domain containing 769 2002-11-20 2016-10-05 319089 ENSG00000139865 OTTHUMG00000157369 uc001wuj.4 BC014342 XM_002343299 Q86TZ1 MGI:1918096 RGD:1560556 TTC6 +HGNC:19750 TTC7A tetratricopeptide repeat domain 7A protein-coding gene gene with protein product Approved 2p21 02p21 KIAA1140 TTC7 tetratricopeptide repeat domain 7 Tetratricopeptide repeat domain containing 769 2002-11-25 2004-06-02 2004-06-02 2016-10-05 57217 ENSG00000068724 OTTHUMG00000153121 uc002rvo.4 AB032966 XM_372927 "CCDS33193|CCDS74510|CCDS74511" Q9ULT0 10574461 MGI:1920999 RGD:1306211 TTC7A 609332 353460 +HGNC:19858 TTC7B tetratricopeptide repeat domain 7B protein-coding gene gene with protein product Approved 14q32.12 14q32.12 TTC7L1 tetratricopeptide repeat domain 7 like 1 Tetratricopeptide repeat domain containing 769 2002-11-27 2004-06-04 2004-06-02 2015-09-08 145567 ENSG00000165914 OTTHUMG00000171047 uc001xyp.4 BC035865 NM_001320421 CCDS32140 Q86TV6 MGI:2144724 RGD:1305920 TTC7B +HGNC:20087 TTC8 tetratricopeptide repeat domain 8 protein-coding gene gene with protein product Approved 14q31.3 14q31.3 "BBS8|RP51" "Tetratricopeptide repeat domain containing|Bardet-Biedl syndrome associated|BBSome" "769|980|1122" 2002-12-17 2013-02-14 123016 ENSG00000165533 OTTHUMG00000170884 uc059edo.1 AK093891 NM_144596 "CCDS9885|CCDS9886|CCDS32137|CCDS73674|CCDS73675" Q8TAM2 "14520415|20451172" MGI:1923510 RGD:1307769 TTC8 608132 120323 +HGNC:20267 TTC9 tetratricopeptide repeat domain 9 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 "KIAA0227|TTC9A" Tetratricopeptide repeat domain containing 769 2003-11-25 2015-09-08 23508 ENSG00000133985 OTTHUMG00000172133 uc001xmi.2 D86980 XM_027236 CCDS45132 Q92623 MGI:1916730 RGD:1565985 TTC9 610488 +HGNC:26395 TTC9B tetratricopeptide repeat domain 9B protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ30373 Tetratricopeptide repeat domain containing 769 2005-10-07 2014-11-19 148014 ENSG00000174521 OTTHUMG00000182600 uc002onc.3 BC029539 NM_152479 CCDS12550 Q8N6N2 MGI:1920282 RGD:1306256 TTC9B +HGNC:28432 TTC9C tetratricopeptide repeat domain 9C protein-coding gene gene with protein product Approved 11q12.3 11q12.3 MGC29649 Tetratricopeptide repeat domain containing 769 2005-10-07 2014-11-19 283237 ENSG00000162222 OTTHUMG00000167607 uc001nuy.4 BC032123 NM_173810 CCDS8033 Q8N5M4 MGI:1917637 RGD:1359253 TTC9C +HGNC:23700 TTC12 tetratricopeptide repeat domain 12 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 "FLJ13859|FLJ20535|TPARM" Tetratricopeptide repeat domain containing 769 2003-12-02 2015-08-26 54970 ENSG00000149292 OTTHUMG00000142832 uc001pnu.3 AK000542 NM_017868 "CCDS8360|CCDS81627" Q9H892 12964006 MGI:2444588 RGD:1303264 TTC12 610732 +HGNC:26204 TTC13 tetratricopeptide repeat domain 13 protein-coding gene gene with protein product Approved 1q42.2 01q42.2 FLJ22584 Tetratricopeptide repeat domain containing 769 2003-12-22 2016-04-25 79573 ENSG00000143643 OTTHUMG00000037788 uc001huf.5 NM_024525 "CCDS1588|CCDS44332" Q8NBP0 MGI:2384573 RGD:1310186 TTC13 +HGNC:24697 TTC14 tetratricopeptide repeat domain 14 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "FLJ00166|KIAA1980" Tetratricopeptide repeat domain containing 769 2003-12-22 2016-10-05 151613 ENSG00000163728 OTTHUMG00000157859 uc003fkk.4 AB075860 NM_133462 "CCDS3237|CCDS46963|CCDS75055" Q96N46 11853319 MGI:1914370 RGD:1310045 TTC14 +HGNC:26536 TTC16 tetratricopeptide repeat domain 16 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 FLJ32780 Tetratricopeptide repeat domain containing 769 2004-01-06 2016-10-05 158248 ENSG00000167094 OTTHUMG00000020711 uc004brq.2 AK057342 NM_144965 CCDS6875 Q8NEE8 12477932 MGI:2443048 RGD:2318922 TTC16 +HGNC:25596 TTC17 tetratricopeptide repeat domain 17 protein-coding gene gene with protein product Approved 11p12-p11.2 11p12-p11.2 FLJ10890 Tetratricopeptide repeat domain containing 769 2004-01-08 2016-10-11 55761 ENSG00000052841 OTTHUMG00000166398 uc001mxi.4 AK001540 NM_018259 "CCDS31466|CCDS76396" Q96AE7 12477932 MGI:1921819 RGD:1305410 TTC17 +HGNC:26006 TTC19 tetratricopeptide repeat domain 19 protein-coding gene gene with protein product Approved 17p12 17p12 "FLJ20343|MGC19520" Tetratricopeptide repeat domain containing 769 2004-08-27 2016-10-05 54902 ENSG00000011295 OTTHUMG00000059306 uc002gph.4 AK094819 NM_017775 CCDS11174 Q6DKK2 MGI:1920045 RGD:1582808 TTC19 613814 260358 +HGNC:30761 TTC21A tetratricopeptide repeat domain 21A protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "STI2|IFT139A" "Intraflagellar transport proteins|Tetratricopeptide repeat domain containing" "615|769" 2005-01-26 2016-04-25 199223 ENSG00000168026 OTTHUMG00000155973 uc003cjc.3 AJ487015 NM_145755 "CCDS43068|CCDS46800" Q8NDW8 MGI:1921302 RGD:1308806 TTC21A 611430 +HGNC:25660 TTC21B tetratricopeptide repeat domain 21B protein-coding gene gene with protein product Approved 2q24.3 02q24.3 "FLJ11457|JBTS11|NPHP12|IFT139B|THM1" "Intraflagellar transport proteins|Tetratricopeptide repeat domain containing" "615|769" 2005-01-26 2015-08-06 79809 ENSG00000123607 OTTHUMG00000154083 uc002udk.4 AB082523 NM_024753 CCDS33315 Q7Z4L5 "12056414|21258341" MGI:1920918 RGD:1565122 TTC21B 612014 260351 +HGNC:41115 TTC21B-AS1 TTC21B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q24.3 02q24.3 2013-10-15 2014-11-19 100506134 ENSG00000224490 OTTHUMG00000154082 NR_038983 +HGNC:26067 TTC22 tetratricopeptide repeat domain 22 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 FLJ20619 Tetratricopeptide repeat domain containing 769 2005-08-12 2014-11-19 55001 ENSG00000006555 OTTHUMG00000009916 uc001cxz.5 AK000626 NM_017904 "CCDS598|CCDS44152" Q5TAA0 MGI:3045307 RGD:1561518 TTC22 +HGNC:25730 TTC23 tetratricopeptide repeat domain 23 protein-coding gene gene with protein product Approved 15q26.3 15q26.3 "FLJ12572|HCC-8" Tetratricopeptide repeat domain containing 769 2005-08-12 2014-11-19 64927 ENSG00000103852 OTTHUMG00000147344 uc010bor.5 NM_022905 CCDS10379 Q5W5X9 12477932 MGI:1914259 RGD:1310409 TTC23 +HGNC:26355 TTC23L tetratricopeptide repeat domain 23 like protein-coding gene gene with protein product Approved 5p13.2 05p13.2 FLJ25439 tetratricopeptide repeat domain 23-like 2008-07-14 2016-01-29 2016-01-29 153657 ENSG00000205838 OTTHUMG00000162020 uc003jiu.4 NM_144725 CCDS54840 Q6PF05 25751302 MGI:1923027 RGD:1564928 TTC23L 616344 +HGNC:32348 TTC24 tetratricopeptide repeat domain 24 protein-coding gene gene with protein product Approved 1q22 01q22 Tetratricopeptide repeat domain containing 769 2005-12-14 2014-11-19 164118 ENSG00000187862 OTTHUMG00000033202 uc021pbf.1 XM_089384 CCDS53379 A2A3L6 MGI:2443841 RGD:2319887 TTC24 +HGNC:25280 TTC25 tetratricopeptide repeat domain 25 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 DKFZP434H0115 Tetratricopeptide repeat domain containing 769 2005-12-14 2016-08-05 83538 ENSG00000204815 OTTHUMG00000175837 uc032fin.2 AK055498 NM_031421 CCDS74063 Q96NG3 27486780 MGI:1921657 RGD:1311859 TTC25 617095 464166 +HGNC:21882 TTC26 tetratricopeptide repeat domain 26 protein-coding gene gene with protein product Approved 7q34 07q34 "FLJ12571|dyf-13|DYF13|IFT56" "Intraflagellar transport proteins|Tetratricopeptide repeat domain containing" "615|769" 2006-03-17 2015-08-06 79989 ENSG00000105948 OTTHUMG00000157472 uc003vus.4 AK022633 NM_024926 "CCDS5852|CCDS55172|CCDS55173|CCDS75665|CCDS83230" A0AVF1 MGI:2444853 RGD:1561363 TTC26 +HGNC:25986 TTC27 tetratricopeptide repeat domain 27 protein-coding gene gene with protein product Approved 2p22.3 02p22.3 FLJ20272 Tetratricopeptide repeat domain containing 769 2006-05-15 2014-11-19 55622 ENSG00000018699 OTTHUMG00000152134 uc002rom.4 "BC063791|AK000279" NM_017735 CCDS33176 Q6P3X3 MGI:1921446 RGD:1305264 TTC27 +HGNC:29179 TTC28 tetratricopeptide repeat domain 28 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 KIAA1043 Tetratricopeptide repeat domain containing 769 2006-07-11 2015-08-26 23331 ENSG00000100154 OTTHUMG00000151006 uc003adp.4 AB028966 XM_929318 CCDS46678 Q96AY4 10470851 MGI:2140873 RGD:1594541 TTC28 615098 +HGNC:29336 TTC28-AS1 TTC28 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q12.1 22q12.1 KIAA1648 "TTC28AS|TTC28-AS" "TTC28 antisense RNA (non-protein coding)|TTC28 antisense RNA 1 (non-protein coding)" 2010-07-08 2010-11-25 2012-08-15 2014-11-19 284900 ENSG00000235954 OTTHUMG00000150973 uc003ado.5 NR_026962 11258795 +HGNC:29936 TTC29 tetratricopeptide repeat domain 29 protein-coding gene gene with protein product Approved 4q31.23 04q31.23 NYD-SP14 Tetratricopeptide repeat domain containing 769 2006-07-11 2014-11-19 83894 ENSG00000137473 OTTHUMG00000162047 uc003ikw.5 AF345910 NM_031956 "CCDS47141|CCDS75200|CCDS82965" Q8NA56 12477932 MGI:1920551 RGD:1589777 TTC29 +HGNC:25853 TTC30A tetratricopeptide repeat domain 30A protein-coding gene gene with protein product Approved 2q31.2 02q31.2 "FLJ13946|IFT70A" "Intraflagellar transport proteins|Tetratricopeptide repeat domain containing" "615|769" 2006-07-11 2015-09-08 92104 ENSG00000197557 OTTHUMG00000132528 uc002ulo.4 AK024008 NM_152275 CCDS2276 Q86WT1 12477932 "MGI:1926052|MGI:3700200" TTC30A +HGNC:26425 TTC30B tetratricopeptide repeat domain 30B protein-coding gene gene with protein product Approved 2q31.2 02q31.2 "FLJ30990|fleer|IFT70B" "Intraflagellar transport proteins|Tetratricopeptide repeat domain containing" "615|769" 2006-07-11 2015-08-26 150737 ENSG00000196659 OTTHUMG00000154166 uc002uln.4 AK055552 NM_152517 CCDS42784 Q8N4P2 12477932 MGI:1919671 RGD:1590784 TTC30B +HGNC:25759 TTC31 tetratricopeptide repeat domain 31 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 FLJ12788 Tetratricopeptide repeat domain containing 769 2006-07-11 2014-11-19 64427 ENSG00000115282 OTTHUMG00000152887 uc002slt.3 AK026819 NM_022492 CCDS42701 Q49AM3 12477932 TTC31 +HGNC:32954 TTC32 tetratricopeptide repeat domain 32 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 Tetratricopeptide repeat domain containing 769 2006-07-11 2014-11-19 130502 ENSG00000183891 OTTHUMG00000151776 uc002rdg.4 BC057850 NM_001008237 CCDS33151 Q5I0X7 MGI:1922766 RGD:1585566 TTC32 +HGNC:29959 TTC33 tetratricopeptide repeat domain 33 protein-coding gene gene with protein product Approved 5p13.1 05p13.1 OSRF osmosis responsive factor Tetratricopeptide repeat domain containing 769 2006-08-24 2014-11-19 23548 ENSG00000113638 OTTHUMG00000131142 uc003jma.4 BC015701 NM_012382 CCDS3931 Q6PID6 12477932 MGI:1914765 RGD:1564042 TTC33 +HGNC:34297 TTC34 tetratricopeptide repeat domain 34 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 Tetratricopeptide repeat domain containing 769 2008-06-11 2014-11-19 100287898 ENSG00000215912 OTTHUMG00000000539 uc057bor.2 XM_002342015 CCDS55565 A8MYJ7 MGI:2445205 RGD:1304840 TTC34 +HGNC:33708 TTC36 tetratricopeptide repeat domain 36 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 HBP21 HSP70 binding protein 21 Tetratricopeptide repeat domain containing 769 2008-04-15 2015-08-26 143941 ENSG00000172425 OTTHUMG00000166338 uc001ptg.2 EU489483 NM_001080441 CCDS31687 A6NLP5 MGI:2384760 RGD:1359544 TTC36 +HGNC:23639 TTC37 tetratricopeptide repeat domain 37 protein-coding gene gene with protein product Approved 5q15 05q15 THES thespin KIAA0372 KIAA0372 Tetratricopeptide repeat domain containing 769 2003-12-17 2008-06-11 2008-06-11 2016-10-12 9652 ENSG00000198677 OTTHUMG00000121165 uc003klb.4 AB002370 NM_014639 CCDS4072 Q6PGP7 9205841 MGI:2679923 RGD:1306062 LRG_173|http://www.lrg-sequence.org/LRG/LRG_173 TTC37 614589 238544 +HGNC:26082 TTC38 tetratricopeptide repeat domain 38 protein-coding gene gene with protein product Approved 22q13.31 22q13.31 FLJ20699 Tetratricopeptide repeat domain containing 769 2008-06-11 2016-10-05 55020 ENSG00000075234 OTTHUMG00000150494 uc003bhi.3 NM_017931 CCDS43030 Q5R3I4 MGI:2146198 RGD:1306041 TTC38 +HGNC:18657 TTC39A tetratricopeptide repeat domain 39A protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "KIAA0452|DEME-6" C1orf34 chromosome 1 open reading frame 34 Tetratricopeptide repeat domain containing 769 2002-05-29 2008-06-23 2008-06-23 2015-08-26 22996 ENSG00000085831 OTTHUMG00000008193 uc001csl.4 AB007921 XM_011541048 "CCDS44143|CCDS44144|CCDS72789|CCDS72790|CCDS76162|CCDS76163" Q5SRH9 "9455484|9461476" MGI:2444350 RGD:1311126 TTC39A +HGNC:40851 TTC39A-AS1 TTC39A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p32.3 01p32.3 2014-02-02 2014-11-19 102724097 ENSG00000261664 OTTHUMG00000008189 CB128747 NR_123731 +HGNC:23704 TTC39B tetratricopeptide repeat domain 39B protein-coding gene gene with protein product Approved 9p22.3 09p22.3 FLJ33868 C9orf52 chromosome 9 open reading frame 52 Tetratricopeptide repeat domain containing 769 2003-12-02 2008-06-23 2008-06-23 2016-10-05 158219 ENSG00000155158 OTTHUMG00000019581 uc003zlr.3 AK091187 NM_152574 "CCDS55294|CCDS55295|CCDS55296|CCDS6477" Q5VTQ0 MGI:1917113 RGD:1305797 TTC39B 613574 +HGNC:26595 TTC39C tetratricopeptide repeat domain 39C protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "FLJ33761|HsT2697" C18orf17 chromosome 18 open reading frame 17 Tetratricopeptide repeat domain containing 769 2004-05-04 2008-06-23 2008-06-23 2014-11-18 125488 ENSG00000168234 OTTHUMG00000179403 uc002kuu.4 AK091080 NM_153211 "CCDS32804|CCDS45839|CCDS58616|CCDS77165" Q8N584 14702039 MGI:1919997 RGD:1585423 TTC39C +HGNC:51321 TTC39C-AS1 TTC39C antisense RNA 1 non-coding RNA RNA, long non-coding Approved 18q11.2 18q11.2 2014-10-02 2014-10-02 102724246 ENSG00000264745 OTTHUMG00000179404 "DB448536|DB513641|BX102499" NR_110796 +HGNC:44019 TTC39CP1 tetratricopeptide repeat domain 39C pseudogene 1 pseudogene pseudogene Approved 4q26 04q26 2012-05-28 2012-05-28 100288825 ENSG00000250627 OTTHUMG00000161074 NG_022030 PGOHUM00000245667 +HGNC:35451 TTC39DP tetratricopeptide repeat domain 39D, pseudogene pseudogene pseudogene Approved 2p22.1 02p22.1 2010-08-19 2014-11-19 646640 ENSG00000227238 OTTHUMG00000153484 NG_021561 MGI:1914987 PGOHUM00000240625 +HGNC:49210 TTC41P tetratricopeptide repeat domain 41, pseudogene pseudogene pseudogene Approved 12q23.3 12q23.3 GNNP 2015-04-10 2015-04-10 253724 ENSG00000214198 OTTHUMG00000170097 NR_027249 Q6P2S7 MGI:2387653 +HGNC:12397 TTF1 transcription termination factor 1 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 transcription termination factor, RNA polymerase I Myb/SANT domain containing 532 1996-05-13 2016-05-24 2016-10-05 7270 ENSG00000125482 OTTHUMG00000020836 uc004cbl.5 BC050734 NM_007344 "CCDS6948|CCDS75925" Q15361 7597036 MGI:105044 RGD:1565673 TTF1 600777 +HGNC:12398 TTF2 transcription termination factor 2 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 "HuF2|ZGRF6" "zinc finger, GRF-type containing 6|transcription release factor 2" transcription termination factor, RNA polymerase II Zinc fingers GRF-type 135 1998-10-14 2016-05-24 2016-05-24 8458 ENSG00000116830 OTTHUMG00000012030 uc001egy.4 AF073771 XM_017002549 CCDS892 Q9UNY4 "9748214|10455150" MGI:1921294 RGD:1309145 TTF2 604718 +HGNC:29029 TTI1 TELO2 interacting protein 1 protein-coding gene gene with protein product Approved 20q11.23 20q11.23 smg-10 smg-10 homolog, nonsense mediated mRNA decay factor (C. elegans) KIAA0406 "KIAA0406|Tel2 interacting protein 1 homolog (S. pombe)" TTT complex 1320 2006-05-19 2010-06-22 2011-11-10 2014-11-19 9675 ENSG00000101407 OTTHUMG00000032433 uc002xhm.4 BC013121 NM_014657 CCDS13300 O43156 "9455477|20427287|20371770" MGI:1922675 RGD:1562582 TTI1 614425 +HGNC:26262 TTI2 TELO2 interacting protein 2 protein-coding gene gene with protein product Approved 8p12 08p12 FLJ23263 C8orf41 "chromosome 8 open reading frame 41|Tel2 interacting protein 2 homolog (S. pombe)" TTT complex 1320 2005-07-28 2011-09-22 2011-11-10 2011-11-10 80185 ENSG00000129696 uc003xjn.2 AK026916 NM_025115 "CCDS6090|CCDS83276" Q6NXR4 "20801936|20810650" MGI:2384576 RGD:1310414 614426 392264 +HGNC:12400 TTIM1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2016-07-19 +HGNC:12401 TTK TTK protein kinase protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "MPS1|MPS1L1|CT96|MPH1" "cancer/testis antigen 96|monopolar spindle 1 kinase" 1995-07-11 2015-08-26 7272 ENSG00000112742 OTTHUMG00000015088 uc003pjb.5 XM_011536099 "CCDS4993|CCDS55040" P33981 1639825 MGI:1194921 RGD:1305558 TTK 604092 objectId:2264 +HGNC:21586 TTL tubulin tyrosine ligase protein-coding gene gene with protein product Approved 2q14.1 02q14.1 MGC46235 Tubulin tyrosine ligase family 779 2004-01-13 2016-10-05 150465 ENSG00000114999 OTTHUMG00000131316 uc002thu.4 NM_153712 CCDS2096 Q8NG68 11431336 MGI:1916987 RGD:621113 TTL 608291 6.3.2.25 +HGNC:1312 TTLL1 tubulin tyrosine ligase like 1 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 C22orf7 "tubulin tyrosine ligase-like 1|tubulin tyrosine ligase-like family member 1" Tubulin tyrosine ligase family 779 2000-03-29 2015-11-19 2016-10-05 25809 ENSG00000100271 OTTHUMG00000150699 uc003bdi.5 AL096886 NM_012263 CCDS14043 O95922 "10591208|11054573" MGI:2443047 RGD:1309124 TTLL1 608955 +HGNC:21211 TTLL2 tubulin tyrosine ligase like 2 protein-coding gene gene with protein product Approved 6q27 06q27 "NYD-TSPG|dJ366N23.3" C6orf104 "chromosome 6 open reading frame 104|tubulin tyrosine ligase-like family member 2" Tubulin tyrosine ligase family 779 2003-11-25 2004-01-14 2015-11-19 2015-11-19 83887 ENSG00000120440 OTTHUMG00000016023 uc003qvs.2 AK093039 NM_031949 CCDS5301 Q9BWV7 11054573 MGI:3644030 RGD:1305200 TTLL2 +HGNC:24483 TTLL3 tubulin tyrosine ligase like 3 protein-coding gene gene with protein product Approved 3p25.3 03p25.3 "DKFZP434B103|HOTTL" tubulin tyrosine ligase-like family member 3 Tubulin tyrosine ligase family 779 2004-01-13 2015-11-19 2016-04-25 26140 ENSG00000214021 OTTHUMG00000128439 uc003btg.5 NM_001025930.2 CCDS43048 Q9Y4R7 11054573 MGI:2141418 RGD:1311255 TTLL3 +HGNC:28976 TTLL4 tubulin tyrosine ligase like 4 protein-coding gene gene with protein product Approved 2q35 02q35 KIAA0173 tubulin tyrosine ligase-like family member 4 Tubulin tyrosine ligase family 779 2004-03-11 2015-11-19 2015-11-19 9654 ENSG00000135912 OTTHUMG00000133081 uc002viy.4 NM_014640 CCDS2422 Q14679 11054573 MGI:1914784 RGD:1594742 TTLL4 +HGNC:19963 TTLL5 tubulin tyrosine ligase like 5 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 KIAA0998 "KIAA0998|tubulin tyrosine ligase-like family member 5" Tubulin tyrosine ligase family 779 2003-11-21 2005-07-29 2015-11-19 2015-11-19 23093 ENSG00000119685 OTTHUMG00000171611 uc001xrx.4 AF107885 NM_015072 CCDS32124 Q6EMB2 15890843 MGI:2443657 RGD:1563583 TTLL5 612268 442634 +HGNC:26664 TTLL6 tubulin tyrosine ligase like 6 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 FLJ35808 tubulin tyrosine ligase-like family member 6 Tubulin tyrosine ligase family 779 2006-01-24 2015-11-19 2015-11-19 284076 ENSG00000170703 OTTHUMG00000156978 uc060gxc.1 AK093127 NM_173623 "CCDS11537|CCDS45724" Q8N841 15890843 MGI:2683461 RGD:1311922 TTLL6 610849 +HGNC:26242 TTLL7 tubulin tyrosine ligase like 7 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 FLJ23033 tubulin tyrosine ligase-like family member 7 Tubulin tyrosine ligase family 779 2005-07-28 2015-11-19 2015-11-19 79739 ENSG00000137941 OTTHUMG00000009932 uc001djc.4 AY170843 NM_024686 CCDS690 Q6ZT98 15890843 MGI:1918142 RGD:1566117 TTLL7 +HGNC:41486 TTLL7-IT1 TTLL7 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 TTLL7 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874314 ENSG00000233061 OTTHUMG00000009973 uc057hyj.1 +HGNC:34000 TTLL8 tubulin tyrosine ligase like 8 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 tubulin tyrosine ligase-like family member 8 Tubulin tyrosine ligase family 779 2008-02-21 2015-11-19 2015-11-19 164714 ENSG00000138892 OTTHUMG00000150241 uc062fiw.1 NM_001080447 A6PVC2 15890843 MGI:1922902 RGD:1306462 TTLL8 +HGNC:16118 TTLL9 tubulin tyrosine ligase like 9 protein-coding gene gene with protein product Approved 20q11 20q11 dJ310O13.1 C20orf125 "chromosome 20 open reading frame 125|tubulin tyrosine ligase-like family member 9" Tubulin tyrosine ligase family 779 2001-07-17 2005-07-28 2015-11-19 2015-11-19 164395 ENSG00000131044 OTTHUMG00000186843 uc002wwy.2 AL031658 NM_001008409 CCDS42863 Q3SXZ7 15890843 MGI:1913589 RGD:1359622 TTLL9 +HGNC:26693 TTLL10 tubulin tyrosine ligase like 10 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 FLJ36119 TTLL5 "tubulin tyrosine ligase-like family, member 5|tubulin tyrosine ligase-like family member 10" Tubulin tyrosine ligase family 779 2005-07-13 2005-07-29 2015-11-19 2015-11-19 254173 ENSG00000162571 OTTHUMG00000000851 uc010nyg.2 AK093438 NM_153254 "CCDS8|CCDS44036" Q6ZVT0 15890843 MGI:1921855 RGD:1560839 TTLL10 +HGNC:41159 TTLL10-AS1 TTLL10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.33 01p36.33 TTLL10 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100506376 ENSG00000205231 OTTHUMG00000000850 uc001acx.2 AK128833 XR_946813 +HGNC:18113 TTLL11 tubulin tyrosine ligase like 11 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 bA244O19.1 C9orf20 "chromosome 9 open reading frame 20|tubulin tyrosine ligase-like family member 11" Tubulin tyrosine ligase family 779 2002-01-31 2005-07-28 2016-04-19 2016-10-05 158135 ENSG00000175764 OTTHUMG00000020597 uc011lyl.3 AF521886 XM_088486 "CCDS6834|CCDS48012" Q8NHH1 15890843 MGI:1921660 RGD:1588742 TTLL11 +HGNC:24214 TTLL11-IT1 TTLL11 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 9q34.11 09q34.11 C9orf148 "chromosome 9 open reading frame 148|TTLL11 intronic transcript 1 (non-protein coding)" 2004-05-27 2012-04-03 2015-02-25 2016-08-22 105376261 ENSG00000237548 OTTHUMG00000020596 uc004bls.1 +HGNC:28974 TTLL12 tubulin tyrosine ligase like 12 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 KIAA0153 tubulin tyrosine ligase-like family member 12 Tubulin tyrosine ligase family 779 2006-02-02 2015-11-19 2016-10-05 23170 ENSG00000100304 OTTHUMG00000150682 uc003bdq.4 D63487 NM_015140 CCDS14047 Q14166 15890843 MGI:3039573 RGD:1305319 TTLL12 +HGNC:32484 TTLL13P tubulin tyrosine ligase like 13, pseudogene pseudogene pseudogene Approved 15q26.1 15q26.1 "FLJ46079|MGC33417" TTLL13 "tubulin tyrosine ligase-like family, member 13|tubulin tyrosine ligase-like family member 13, pseudogene" Tubulin tyrosine ligase family 779 2006-02-02 2015-01-16 2015-11-19 2015-11-19 440307 ENSG00000213471 OTTHUMG00000177210 BC036668 NR_104604 A6NNM8 15890843 MGI:1920845 RGD:1310399 +HGNC:12403 TTN titin protein-coding gene gene with protein product Approved 2q31.2 02q31.2 "CMPD4|FLJ32040|TMD|CMH9|LGMD2J|MYLK5" CMD1G cardiomyopathy, dilated 1G (autosomal dominant) "Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "555|593|594" 1991-06-07 2004-02-13 2016-10-12 7273 ENSG00000155657 OTTHUMG00000154448 uc031rqc.3 X90568 NM_133378 "CCDS54421|CCDS54422|CCDS54423|CCDS54424|CCDS33337|CCDS59435|CCDS74610" Q8WZ42 "2129545|10051295" MGI:98864 RGD:621114 "FHC Mutation Database|http://www.angis.org.au/Databases/Heart/heartbreak.html|TTN @ LOVD|http://www.LOVD.nl/TTN|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=TTN|LRG_391|http://www.lrg-sequence.org/LRG/LRG_391" TTN 188840 120326 objectId:2265 +HGNC:44124 TTN-AS1 TTN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q31.2 02q31.2 TTN antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100506866 ENSG00000237298 OTTHUMG00000133536 uc061qcw.1 BC041357 NR_038272 +HGNC:12404 TTPA alpha tocopherol transfer protein protein-coding gene gene with protein product Approved 8q12.3 08q12.3 AVED "ataxia (Friedreich-like) with vitamin E deficiency|tocopherol (alpha) transfer protein" 1993-07-06 2016-05-23 2016-05-23 7274 ENSG00000137561 OTTHUMG00000164367 uc003xux.3 BC058000 NM_000370 CCDS6178 P49638 "7719340|7887897" MGI:1354168 RGD:3915 TTPA 600415 120334 +HGNC:16114 TTPAL alpha tocopherol transfer protein like protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ179M20.3 C20orf121 "chromosome 20 open reading frame 121|tocopherol (alpha) transfer protein-like" 2001-07-17 2008-06-23 2016-05-23 2016-05-23 79183 ENSG00000124120 OTTHUMG00000032536 uc002xmd.2 BC003071 NM_024331 CCDS13332 Q9BTX7 MGI:1923330 RGD:1305754 TTPAL +HGNC:12405 TTR transthyretin protein-coding gene gene with protein product Approved 18q12.1 18q12.1 "HsT2651|CTS" "PALB|CTS1" "prealbumin, amyloidosis type I|carpal tunnel syndrome 1" Gla domain containing 1250 1986-01-01 2008-07-31 2016-10-12 7276 ENSG00000118271 OTTHUMG00000131984 uc002kwx.5 M10605 NM_000371 CCDS11899 P02766 8309582 MGI:98865 RGD:3916 "LSDB list|http://grenada.lumc.nl/LSDB_list/lsdbs/TTR|LRG_416|http://www.lrg-sequence.org/LRG/LRG_416" TTR 176300 120337 objectId:2851 +HGNC:14022 TTTY1 testis-specific transcript, Y-linked 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 "TTY1|NCRNA00033|LINC00033" "non-protein coding RNA 33|long intergenic non-protein coding RNA 33" testis-specific transcript, Y-linked 1 2001-09-21 2008-09-05 2012-10-12 50858 ENSG00000129845 OTTHUMG00000046226 uc004fsm.3 AF000990 NR_001538 +HGNC:37981 TTTY1B testis-specific transcript, Y-linked 1B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 2010-03-16 2012-10-12 100101116 ENSG00000129816 OTTHUMG00000040984 uc004fqt.3 NR_003589 +HGNC:14023 TTTY2 testis-specific transcript, Y-linked 2 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 "TTY2|lINC00109" long intergenic non-protein coding RNA 109 testis-specific transcript, Y-linked 2 2001-09-21 2008-09-05 2012-10-12 60439 ENSG00000212855 OTTHUMG00000046230 uc065crc.1 AF000991 NR_001536 +HGNC:37982 TTTY2B testis-specific transcript, Y-linked 2B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 2010-03-16 2012-10-12 100101117 ENSG00000212856 OTTHUMG00000040980 uc065cqa.1 NR_003590 +HGNC:16480 TTTY3 testis-specific transcript, Y-linked 3 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.23 Yq11.23 "TTY3|TTTY3A|LINC00121" long intergenic non-protein coding RNA 121 testis-specific transcript, Y-linked 3 2001-09-21 2009-08-21 2012-10-12 114760 ENSG00000231141 OTTHUMG00000045256 uc004fxg.1 AF332230 NR_001524 400036 +HGNC:31888 TTTY3B testis-specific transcript, Y-linked 3B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.23 Yq11.23 LNCRNA00122 long intergenic non-protein coding RNA 122 testis-specific transcript, Y-linked 3B 2005-01-06 2009-08-21 2015-07-22 474148 ENSG00000280961 OTTHUMG00000189591 uc004fvy.1 NR_002176 +HGNC:16481 TTTY4 testis-specific transcript, Y-linked 4 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.223 Yq11.223 "TTY4|TTTY4A|LINC00123" long intergenic non-protein coding RNA 123 testis-specific transcript, Y-linked 4 2001-09-21 2009-08-21 2016-10-05 114761 ENSG00000226906 OTTHUMG00000045294 uc011nbi.2 AF332231 NR_001525 400037 +HGNC:31891 TTTY4B testis-specific transcript, Y-linked 4B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.23 Yq11.23 LINC00124 long intergenic non-protein coding RNA 124 testis-specific transcript, Y-linked 4B 2005-01-06 2009-08-21 2016-10-05 474149 ENSG00000235412 OTTHUMG00000045296 uc004fwh.3 NR_002178 +HGNC:31892 TTTY4C testis-specific transcript, Y-linked 4C (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.23 Yq11.23 LINC00125 long intergenic non-protein coding RNA 125 testis-specific transcript, Y-linked 4C 2005-01-06 2009-08-21 2016-10-05 474150 ENSG00000228296 OTTHUMG00000045200 uc011nbv.2 NR_002177 +HGNC:16482 TTTY5 testis-specific transcript, Y-linked 5 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.223 Yq11.223 "TTY5|LINC00126" long intergenic non-protein coding RNA 126 testis-specific transcript, Y-linked 5 2001-09-21 2009-08-21 2016-10-05 83863 ENSG00000215560 OTTHUMG00000043578 uc004fvb.3 AF332236 NR_001541 400038 +HGNC:16483 TTTY6 testis-specific transcript, Y-linked 6 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.223 Yq11.223 "TTY6|TTTY6A|LINC00127" long intergenic non-protein coding RNA 127 testis-specific transcript, Y-linked 6 2001-09-21 2009-08-21 2012-10-12 84672 ENSG00000131538 OTTHUMG00000046220 uc022coj.2 AF332237 NR_001527 400039 +HGNC:31887 TTTY6B testis-specific transcript, Y-linked 6B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.223 Yq11.223 LINC00128 long intergenic non-protein coding RNA 128 testis-specific transcript, Y-linked 6B 2005-01-06 2009-08-21 2012-10-12 441543 ENSG00000131548 OTTHUMG00000043580 uc022cog.2 AY597808 NR_002175 +HGNC:18488 TTTY7 testis-specific transcript, Y-linked 7 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 "LINC00129|TTTY7A" long intergenic non-protein coding RNA 129 testis-specific transcript, Y-linked 7 2002-05-22 2009-08-21 2012-10-12 246122 ENSG00000147753 OTTHUMG00000040981 uc004fqw.3 AF332232 NR_001534 +HGNC:37463 TTTY7B testis-specific transcript, Y-linked 7B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00215 non-protein coding RNA 215 2009-10-16 2014-11-18 100101120 ENSG00000147761 OTTHUMG00000046238 uc004fsi.3 BX089948 NR_003592 +HGNC:18489 TTTY8 testis-specific transcript, Y-linked 8 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 "TTY8|NCRNA00130|LINC00130" "non-protein coding RNA 130|long intergenic non-protein coding RNA 130" testis-specific transcript, Y-linked 8 2002-05-22 2009-08-21 2012-10-12 84673 ENSG00000183385 OTTHUMG00000046237 uc065crb.1 AF332234 NR_001533 +HGNC:37622 TTTY8B testis-specific transcript, Y-linked 8B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00217 non-protein coding RNA 217 2009-11-19 2014-11-19 100101118 ENSG00000185700 OTTHUMG00000040982 uc065cqb.1 NR_003591 +HGNC:18490 TTTY9A testis-specific transcript, Y-linked 9A (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.222 Yq11.222 "TTY9|NCRNA00131" non-protein coding RNA 131 TTTY9 testis-specific transcript, Y-linked 9 2002-05-22 2005-12-16 2009-08-21 2015-02-03 83864 AF332238 NR_001530 +HGNC:32425 TTTY9B testis-specific transcript, Y-linked 9B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.222 Yq11.222 NCRNA00132 non-protein coding RNA 132 testis-specific transcript, Y-linked 9B 2005-12-16 2009-08-21 2016-10-05 425057 ENSG00000131007 OTTHUMG00000041950 uc004fts.1 NR_002159 12815422 +HGNC:18491 TTTY10 testis-specific transcript, Y-linked 10 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.223 Yq11.223 NCRNA00133 non-protein coding RNA 133 testis-specific transcript, Y-linked 10 2002-05-22 2009-08-21 2016-10-05 246119 ENSG00000229236 OTTHUMG00000036431 uc004fuj.1 AF332239 NR_001542 Q9BZA0 +HGNC:18492 TTTY11 testis-specific transcript, Y-linked 11 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 "TTY11|NCRNA00134" non-protein coding RNA 134 testis-specific transcript, Y-linked 11 2002-05-22 2009-08-21 2014-11-18 83866 ENSG00000180910 OTTHUMG00000041259 uc004frk.4 AF332240 NR_001548 +HGNC:18493 TTTY12 testis-specific transcript, Y-linked 12 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 "TTY11|NCRNA00135" non-protein coding RNA 135 testis-specific transcript, Y-linked 12 2002-05-22 2009-08-21 2012-10-12 83867 ENSG00000237048 OTTHUMG00000067560 uc004frh.4 AF332241 NR_001551 Q9BZ98 +HGNC:18494 TTTY13 testis-specific transcript, Y-linked 13 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.223 Yq11.223 "TTY13|NCRNA00136" non-protein coding RNA 136 testis-specific transcript, Y-linked 13 2002-05-22 2009-08-18 2016-10-05 83868 ENSG00000184991 OTTHUMG00000043583 uc004fus.3 AF332242 NR_001537 Q9BZ97 +HGNC:38596 TTTY13B testis-specific transcript, Y-linked 13B non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 2010-07-02 2010-07-02 2012-10-12 100287735 +HGNC:38613 TTTY13C testis-specific transcript, Y-linked 13C other unknown Approved Yp11.2 Yp11.2 2010-07-22 2010-07-26 100287979 +HGNC:18495 TTTY14 testis-specific transcript, Y-linked 14 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.222 Yq11.222 "TTY14|NCRNA00137|PRO2834" non-protein coding RNA 137 "NCRNA00185|CYorf14" "testis-specific transcript, Y-linked 14|non-protein coding RNA 185|chromosome Y open reading frame 14" 2002-05-22 2009-08-21 2014-11-18 83869 ENSG00000176728 OTTHUMG00000036505 uc065ctn.1 AF332243 NR_001543 +HGNC:18567 TTTY15 testis-specific transcript, Y-linked 15 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.221 Yq11.221 "DKFZP434I143|NCRNA00138" non-protein coding RNA 138 testis-specific transcript, Y-linked 15 2002-05-22 2009-08-21 2016-10-05 64595 ENSG00000233864 OTTHUMG00000036468 uc004fss.4 AL080135 NR_001545 +HGNC:18840 TTTY16 testis-specific transcript, Y-linked 16 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00139 non-protein coding RNA 139 testis-specific transcript, Y-linked 16 2002-07-22 2009-08-21 2014-11-18 252948 ENSG00000225520 OTTHUMG00000041019 uc004frf.1 NR_001552 +HGNC:18841 TTTY17A testis-specific transcript, Y-linked 17A (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.223 Yq11.223 NCRNA00140 non-protein coding RNA 140 TTTY17 "testis-specific transcript, Y-linked 17|testis-specific transcript, Y-linked 17A" 2002-07-22 2006-09-21 2009-08-21 2016-10-05 252949 ENSG00000228240 OTTHUMG00000043854 uc004fvi.3 AF527829 NR_001526 400040 +HGNC:31889 TTTY17B testis-specific transcript, Y-linked 17B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.23 Yq11.23 NCRNA00141 non-protein coding RNA 141 testis-specific transcript, Y-linked 17B 2005-01-06 2009-08-21 2016-10-05 474151 ENSG00000227439 OTTHUMG00000046228 uc004fwg.3 NR_002180 +HGNC:31890 TTTY17C testis-specific transcript, Y-linked 17C (non-protein coding) non-coding RNA RNA, long non-coding Approved Yq11.23 Yq11.23 NCRNA00142 non-protein coding RNA 142 testis-specific transcript, Y-linked 17C 2005-01-06 2009-08-21 2016-10-05 474152 ENSG00000223641 OTTHUMG00000045207 uc004fwt.3 NR_002179 +HGNC:18842 TTTY18 testis-specific transcript, Y-linked 18 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00143 non-protein coding RNA 143 testis-specific transcript, Y-linked 18 2002-07-22 2009-08-21 2012-10-12 252950 ENSG00000233699 OTTHUMG00000041267 uc004fri.1 NR_001550 +HGNC:18843 TTTY19 testis-specific transcript, Y-linked 19 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00144 non-protein coding RNA 144 testis-specific transcript, Y-linked 19 2002-07-22 2009-08-21 2014-11-18 252952 ENSG00000232419 OTTHUMG00000041268 uc004frj.1 NR_001549 +HGNC:18844 TTTY20 testis-specific transcript, Y-linked 20 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00145 non-protein coding RNA 145 testis-specific transcript, Y-linked 20 2002-07-22 2009-08-21 2012-10-12 252951 ENSG00000232808 OTTHUMG00000041537 uc004frm.3 NR_001546 +HGNC:18845 TTTY21 testis-specific transcript, Y-linked 21 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00146 non-protein coding RNA 146 testis-specific transcript, Y-linked 21 2002-07-22 2009-08-21 2012-10-12 252953 ENSG00000228890 OTTHUMG00000046232 uc004fsk.1 NR_001535 +HGNC:37980 TTTY21B testis-specific transcript, Y-linked 21B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 2010-03-16 2012-10-12 100101115 ENSG00000237563 OTTHUMG00000040983 uc004fqv.3 NR_003588 +HGNC:18846 TTTY22 testis-specific transcript, Y-linked 22 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00147 non-protein coding RNA 147 testis-specific transcript, Y-linked 22 2002-07-22 2009-08-21 2012-10-12 252954 ENSG00000224075 OTTHUMG00000041601 uc004fsn.1 NR_001539 +HGNC:18847 TTTY23 testis-specific transcript, Y-linked 23 (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 NCRNA00148 non-protein coding RNA 148 testis-specific transcript, Y-linked 23 2002-07-22 2009-08-21 2012-10-12 252955 ENSG00000239225 OTTHUMG00000046234 uc004fso.1 NR_001540 +HGNC:37983 TTTY23B testis-specific transcript, Y-linked 23B (non-protein coding) non-coding RNA RNA, long non-coding Approved Yp11.2 Yp11.2 2010-03-16 2012-10-12 100101121 ENSG00000237069 OTTHUMG00000036006 uc004fqq.1 NR_003593 +HGNC:38521 TTTY24P testis-specific transcript, Y-linked 24, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-07 2014-11-19 100287941 NG_031896 +HGNC:38524 TTTY25P testis-specific transcript, Y-linked 25, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-06-08 2015-07-22 100287026 ENSG00000259247 OTTHUMG00000172609 NG_032203 +HGNC:38528 TTTY26P testis-specific transcript, Y-linked 26, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-08 2014-11-19 100287818 +HGNC:38527 TTTY27P testis-specific transcript, Y-linked 27, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-08 2014-11-19 100287874 +HGNC:38534 TTTY28P testis-specific transcript, Y-linked 28, pseudogene pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-06-09 2014-11-19 100287606 +HGNC:38547 TTTY29P testis-specific transcript, Y-linked 29, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-06-11 2014-11-19 100287167 +HGNC:38604 TTTY30P testis-specific transcript, Y-linked 30, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-29 2010-06-29 2014-11-18 100287844 NG_032208 +HGNC:38711 TTTY31P testis-specific transcript, Y-linked 31, pseudogene pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-07-22 2014-11-19 100287905 NG_032210 +HGNC:13476 TTYH1 tweety family member 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "tweety (Drosophila) homolog 1|tweety homolog 1 (Drosophila)" 2000-09-28 2013-09-02 2016-10-05 57348 ENSG00000167614 OTTHUMG00000065544 uc002qft.4 AF177909 XM_017027025 "CCDS12893|CCDS33106|CCDS56102" Q9H313 10950931 MGI:1889007 RGD:1310103 TTYH1 605784 +HGNC:13877 TTYH2 tweety family member 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 C17orf29 "tweety (Drosophila) homolog 2|tweety homolog 2 (Drosophila)" 2000-11-27 2013-09-02 2016-04-05 94015 ENSG00000141540 OTTHUMG00000166018 uc002jkc.4 XM_005257824 "CCDS32717|CCDS45770|CCDS82195" Q9BSA4 "11597145|18577513" MGI:2157091 RGD:1562969 TTYH2 608855 +HGNC:22222 TTYH3 tweety family member 3 protein-coding gene gene with protein product Approved 7p22.3 07p22.3 KIAA1691 tweety homolog 3 (Drosophila) 2003-12-10 2013-09-02 2016-10-05 80727 ENSG00000136295 OTTHUMG00000152050 uc003smp.4 XM_166523 CCDS34588 Q9C0H2 MGI:1925589 RGD:1309549 TTYH3 608919 +HGNC:12406 TUB tubby bipartite transcription factor protein-coding gene gene with protein product Approved 11p15.4 11p15.4 rd5 "tubby (mouse) homolog|tubby homolog (mouse)" 1996-10-11 2013-08-06 2016-10-05 7275 ENSG00000166402 OTTHUMG00000165690 uc001mga.4 U54644 NM_003320 "CCDS7786|CCDS7787" P50607 8612280 MGI:2651573 RGD:3918 TUB 601197 400463 +HGNC:51120 TUB-AS1 TUB antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 2014-07-30 2014-07-30 101927917 ENSG00000248332 OTTHUMG00000165692 NR_120538 +HGNC:20766 TUBA1A tubulin alpha 1a protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "TUBA3|B-ALPHA-1|FLJ25113" tubulin, alpha, brain-specific Tubulins 778 2007-01-30 2015-12-11 2016-07-26 7846 ENSG00000167552 OTTHUMG00000169511 uc001rtp.5 AF141347 NM_006009 "CCDS8781|CCDS58226|CCDS58227" Q71U36 "11504633|3839072" MGI:98869 RGD:619717 TUBA1A 602529 159394 objectId:2638 +HGNC:18809 TUBA1B tubulin alpha 1b protein-coding gene gene with protein product Approved 12q13.12 12q13.12 K-ALPHA-1 tubulin, alpha, ubiquitous Tubulins 778 2007-02-12 2015-12-11 2015-12-11 10376 ENSG00000123416 OTTHUMG00000170410 uc001rtm.4 AF081484 NM_006082 CCDS31792 P68363 "12054644|6646120" MGI:107804 RGD:1565476 TUBA1B 602530 +HGNC:20768 TUBA1C tubulin alpha 1c protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "MGC14580|MGC10851|bcm948" TUBA6 tubulin, alpha 6 Tubulins 778 2005-11-02 2007-02-12 2015-12-11 2015-12-11 84790 ENSG00000167553 OTTHUMG00000169497 uc001rtt.2 BC004949 NM_032704 "CCDS8782|CCDS76556" Q9BQE3 7821789 MGI:1095409 RGD:6503589 TUBA1C +HGNC:12408 TUBA3C tubulin alpha 3c protein-coding gene gene with protein product Approved 13q12.11 13q12.11 bA408E5.3 TUBA2 tubulin, alpha 2 Tubulins 778 1992-09-17 2007-02-12 2015-12-11 2015-12-11 7278 ENSG00000198033 OTTHUMG00000016481 uc009zzj.3 AF005392 NM_006001 CCDS9284 Q13748 9465305 TUBA3C 602528 +HGNC:24071 TUBA3D tubulin alpha 3d protein-coding gene gene with protein product Approved 2q21.1 02q21.1 H2-ALPHA alpha-tubulin isotype H2-alpha Tubulins 778 2007-02-12 2015-12-11 2015-12-11 113457 ENSG00000075886 OTTHUMG00000153600 uc002tsu.5 K03460 NM_080386 CCDS33290 Q13748 3785200 RGD:1565155 TUBA3D +HGNC:20765 TUBA3E tubulin alpha 3e protein-coding gene gene with protein product Approved 2q21.1 02q21.1 Tubulins 778 2007-02-12 2015-12-11 2015-12-11 112714 ENSG00000152086 OTTHUMG00000131626 uc002tqv.4 BC057811 NM_207312 CCDS2158 Q6PEY2 "MGI:1095406|MGI:1095408" TUBA3E +HGNC:24067 TUBA3FP tubulin alpha 3f pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 Tubulins 778 2012-06-22 2015-12-17 2015-12-17 113691 ENSG00000161149 OTTHUMG00000150876 NR_003608 12477932 PGOHUM00000246251 +HGNC:44096 TUBA3GP tubulin alpha 3g pseudogene pseudogene pseudogene Approved 22q11.21 22q11.21 Tubulins 778 2012-06-28 2015-12-17 2015-12-17 645348 ENSG00000249680 OTTHUMG00000150926 NG_006439 PGOHUM00000246419 +HGNC:12407 TUBA4A tubulin alpha 4a protein-coding gene gene with protein product Approved 2q35 02q35 "FLJ30169|H2-ALPHA" TUBA1 "tubulin, alpha 1 (testis specific)|tubulin, alpha 1" Tubulins 778 2001-06-22 2007-02-12 2015-12-11 2016-10-05 7277 ENSG00000127824 OTTHUMG00000133126 uc002vkt.3 AK054731 NM_006000 "CCDS2438|CCDS63131" P68366 3785200 MGI:1095410 RGD:1359623 TUBA4A 191110 objectId:2639 +HGNC:18637 TUBA4B tubulin alpha 4b other unknown Approved 2q35 02q35 FLJ13940 TUBA4 "tubulin, alpha 4|tubulin, alpha 4b (pseudogene)" Tubulins 778 2002-05-14 2007-02-12 2015-12-17 2015-12-17 80086 ENSG00000243910 OTTHUMG00000154516 uc284pqj.1 AK024002 NR_003063 Q9H853 3785200 +HGNC:12410 TUBA8 tubulin alpha 8 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 TUBAL2 Tubulins 778 1999-10-29 2015-12-11 2016-10-05 51807 ENSG00000183785 OTTHUMG00000150097 uc002znv.3 AJ245922 NM_018943 "CCDS13751|CCDS54495" Q9NY65 "10772959|10591208" MGI:1858225 RGD:1566041 TUBA8 605742 260889 +HGNC:12409 TUBAL1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-03-20 +HGNC:23534 TUBAL3 tubulin alpha like 3 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 FLJ21665 tubulin, alpha-like 3 Tubulins 778 2004-05-27 2015-12-11 2015-12-11 79861 ENSG00000178462 OTTHUMG00000017595 uc001ihy.3 AK025318 NM_024803 "CCDS7066|CCDS53491" A6NHL2 MGI:3588215 RGD:1305289 TUBAL3 +HGNC:12411 TUBAP tubulin alpha pseudogene pseudogene pseudogene Approved 21q21.2 21q21.2 2000-05-23 2010-10-01 2015-12-17 2015-12-17 54016 ENSG00000237569 OTTHUMG00000078256 NG_000900 PGOHUM00000239052 +HGNC:14531 TUBAP2 tubulin alpha pseudogene 2 pseudogene pseudogene Approved 11q14.3 11q14.3 2001-02-28 2010-10-01 2015-12-17 2015-12-17 399942 ENSG00000214391 OTTHUMG00000167307 NG_029287 PGOHUM00000257918 +HGNC:44568 TUBAP3 tubulin alpha pseudogene 3 pseudogene pseudogene Approved 3p21.33 03p21.33 TUBA8P1 tubulin, alpha 8 pseudogene 1 2012-11-15 2015-03-19 2015-12-17 2015-12-17 100419007 NG_025571 PGOHUM00000237603 +HGNC:44569 TUBAP4 tubulin alpha pseudogene 4 pseudogene pseudogene Approved 15q25.2 15q25.2 TUBA8P2 tubulin, alpha 8 pseudogene 2 2012-11-15 2015-03-19 2015-12-17 2015-12-17 106479041 ENSG00000261665 OTTHUMG00000172852 NG_045841 PGOHUM00000247230 +HGNC:20778 TUBB tubulin beta class I protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "OK/SW-cl.56|MGC16435|M40|Tubb5" "class I beta-tubulin|beta1-tubulin" "tubulin, beta polypeptide|tubulin, beta|tubulin, beta class I" Tubulins 778 2004-11-22 2015-12-17 2015-12-17 203068 ENSG00000196230 OTTHUMG00000031059 uc063yon.1 AB062393 NM_178014 "CCDS4687|CCDS78124" P07437 "11504633|8270253" MGI:107812 RGD:628596 TUBB 191130 448353 objectId:2640 +HGNC:16257 TUBB1 tubulin beta 1 class VI protein-coding gene gene with protein product Approved 20q13.32 20q13.32 dJ543J19.4 class VI beta-tubulin tubulin, beta 1 Tubulins 778 2001-07-17 2015-12-17 2016-10-12 81027 ENSG00000101162 OTTHUMG00000032860 uc002yak.3 AJ292757 NM_030773 CCDS13475 Q9H4B7 MGI:107814 RGD:1589557 LRG_581|http://www.lrg-sequence.org/LRG/LRG_581 TUBB1 612901 280099 +HGNC:23982 TUBB1P1 tubulin beta 1 class VI pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 "tubulin, beta 1 pseudogene 1|tubulin, beta 1 class VI pseudogene 1" 2010-02-17 2015-12-17 2015-12-17 349448 ENSG00000249726 OTTHUMG00000041971 NG_002948 "11731935|12815422" PGOHUM00000305687 +HGNC:23981 TUBB1P2 tubulin beta 1 class VI pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 "tubulin, beta 1 pseudogene 2|tubulin, beta 1 class VI pseudogene 2" 2010-02-17 2015-12-17 2016-10-05 140004 ENSG00000228578 OTTHUMG00000036414 NG_002947 12815422 PGOHUM00000305489 +HGNC:12412 TUBB2A tubulin beta 2A class IIa protein-coding gene gene with protein product Approved 6p25.2 06p25.2 dJ40E16.7 class IIa beta-tubulin "TUBB|TUBB2" "tubulin, beta polypeptide|tubulin, beta 2|tubulin, beta 2A" Tubulins 778 2001-06-22 2005-11-03 2015-12-17 2015-12-17 7280 ENSG00000137267 OTTHUMG00000014135 uc003mvc.5 AY159127 NM_001069 CCDS4484 Q13885 14574404 MGI:107861 RGD:1588452 TUBB2A 615101 +HGNC:30829 TUBB2B tubulin beta 2B class IIb protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "MGC8685|DKFZp566F223|bA506K6.1" class IIb beta-tubulin tubulin, beta 2B Tubulins 778 2005-11-03 2015-12-17 2015-12-17 347733 ENSG00000137285 OTTHUMG00000014143 uc003mvg.4 BC001352 NM_178012 CCDS4485 Q9BVA1 "8619474|9110174" MGI:1920960 RGD:1309427 TUBB2B 612850 201538 +HGNC:42332 TUBB2BP1 tubulin beta 2B class IIb pseudogene 1 pseudogene pseudogene Approved 6p25.2 06p25.2 2013-01-23 2015-12-17 2015-12-17 100132153 ENSG00000216819 OTTHUMG00000014136 NG_022291 PGOHUM00000243043 +HGNC:20772 TUBB3 tubulin beta 3 class III protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "beta-4|CFEOM3|CFEOM3A" class III beta-tubulin FEOM3 "tubulin, beta 3|fibrosis of extraocular muscles, congenital, 3" Tubulins 778 2004-11-22 2015-12-17 2015-12-17 10381 ENSG00000258947 OTTHUMG00000138985 uc002fph.2 BC000748 NM_006086 "CCDS10988|CCDS56012" Q13509 "9473684|8098743|20074521" MGI:107813 RGD:628595 TUBB3 602661 226013 objectId:2752 +HGNC:42339 TUBB3P1 tubulin beta 3 class III pseudogene 1 pseudogene pseudogene Approved 6q15 06q15 2013-01-23 2015-12-17 2015-12-17 100288513 ENSG00000220418 OTTHUMG00000015197 NG_022360 PGOHUM00000260185 +HGNC:42181 TUBB3P2 tubulin beta 3 class III pseudogene 2 pseudogene pseudogene Approved 7q33 07q33 tubulin, beta 3 class III pseudogene 2 2013-01-23 2015-12-17 2015-12-17 100130187 ENSG00000230101 OTTHUMG00000155458 NG_032092 PGOHUM00000233003 +HGNC:20774 TUBB4A tubulin beta 4A class IVa protein-coding gene gene with protein product Approved 19p13.3 19p13.3 beta-5 class IVa beta-tubulin "TUBB4|DYT4" "tubulin, beta 4|tubulin, beta 4 class IVa|dystonia 4, torsion (autosomal dominant)" Tubulins 778 2004-11-22 2011-10-10 2015-12-17 2015-12-17 10382 ENSG00000104833 OTTHUMG00000181829 uc002mfg.2 AK075307 NM_006087 CCDS12168 P04350 "6865944|6462917|23595291" MGI:107848 RGD:619730 602662 306172 +HGNC:42340 TUBB4AP1 tubulin beta 4A class IVa pseudogene 1 pseudogene pseudogene Approved Xq25 Xq25 tubulin, beta 4A class IVa pseudogene 1 2013-01-23 2015-12-17 2015-12-17 402422 ENSG00000228466 OTTHUMG00000022330 NG_022697 16489141 PGOHUM00000241990 +HGNC:20771 TUBB4B tubulin beta 4B class IVb protein-coding gene gene with protein product Approved 9q34.3 09q34.3 Beta2 class IVb beta-tubulin TUBB2C tubulin, beta 2C Tubulins 778 2005-11-03 2011-10-10 2015-12-17 2015-12-17 10383 ENSG00000188229 OTTHUMG00000131783 uc004cmh.2 BC019359 NM_006088 CCDS7039 P68371 3999141 MGI:1915472 RGD:735101 602660 objectId:2641 +HGNC:42180 TUBB4BP1 tubulin beta 4B class IVb pseudogene 1 pseudogene pseudogene Approved 12p12.1 12p12.1 tubulin, beta 4B class IVb pseudogene 1 2013-01-23 2015-12-17 2015-12-17 106478981 ENSG00000255988 OTTHUMG00000169104 NG_043955 PGOHUM00000239376 +HGNC:42183 TUBB4BP2 tubulin beta 4B class IVb pseudogene 2 pseudogene pseudogene Approved 9p13.3 09p13.3 tubulin, beta 4B class IVb pseudogene 2 2013-01-23 2015-12-17 2015-12-17 100418974 ENSG00000224802 OTTHUMG00000000426 NG_023799 PGOHUM00000236017 +HGNC:42331 TUBB4BP3 tubulin beta 4B class IVb pseudogene 3 pseudogene pseudogene Approved Xq24 Xq24 tubulin, beta 4B class IVb pseudogene 3 2013-01-23 2015-12-17 2015-12-17 106480746 ENSG00000237458 OTTHUMG00000040068 NG_043762 PGOHUM00000261817 +HGNC:42333 TUBB4BP4 tubulin beta 4B class IVb pseudogene 4 pseudogene pseudogene Approved 11q14.3 11q14.3 tubulin, beta 4B class IVb pseudogene 4 2013-01-23 2015-12-17 2015-12-17 106480434 ENSG00000254961 OTTHUMG00000167333 NG_043327 PGOHUM00000242422 +HGNC:42335 TUBB4BP5 tubulin beta 4B class IVb pseudogene 5 pseudogene pseudogene Approved 4q27 04q27 tubulin, beta 4B class IVb pseudogene 5 2013-01-23 2013-01-28 2015-12-17 2015-12-17 106480747 ENSG00000224062 OTTHUMG00000161159 NG_043769 PGOHUM00000261391 +HGNC:42336 TUBB4BP6 tubulin beta 4B class IVb pseudogene 6 pseudogene pseudogene Approved 9q33.1 09q33.1 tubulin, beta 4B class IVb pseudogene 6 2013-01-23 2013-01-28 2015-12-17 2015-12-17 100996306 ENSG00000231166 OTTHUMG00000020568 PGOHUM00000236762 +HGNC:42337 TUBB4BP7 tubulin beta 4B class IVb pseudogene 7 pseudogene pseudogene Approved 6q25.2 06q25.2 tubulin, beta 4B class IVb pseudogene 7 2013-01-23 2015-12-17 2015-12-17 442271 ENSG00000217372 OTTHUMG00000015853 NG_022377 PGOHUM00000243825 +HGNC:20776 TUBB6 tubulin beta 6 class V protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "MGC4083|HsT1601" "tubulin beta MGC4083|class V beta-tubulin" "tubulin, beta 6|tubulin, beta 6 class V" Tubulins 778 2004-11-22 2015-12-17 2015-12-17 84617 ENSG00000176014 OTTHUMG00000131692 uc060nnc.1 AK001295 NM_032525 "CCDS11858|CCDS77153" Q9BUF5 12477932 MGI:1915201 RGD:1305887 TUBB6 615103 +HGNC:42342 TUBB6P1 tubulin beta 6 class V pseudogene 1 pseudogene pseudogene Approved 1p34.3 01p34.3 tubulin, beta 6 class V pseudogene 1 2013-01-23 2015-12-17 2015-12-17 100418964 NG_026927 PGOHUM00000243972 +HGNC:12413 TUBB7P tubulin beta 7 pseudogene pseudogene pseudogene Approved 4q35.2 04q35.2 TUBB4Q "tubulin, beta polypeptide 4, member Q|tubulin, beta polypeptide 4, member Q, pseudogene|tubulin, beta 7, pseudogene" Tubulins 778 2000-08-24 2011-10-10 2015-12-17 2015-12-17 56604 ENSG00000251297 OTTHUMG00000161002 U83110 NG_029424 10828619 PGOHUM00000306576 +HGNC:20773 TUBB8 tubulin beta 8 class VIII protein-coding gene gene with protein product Approved 10p15.3 10p15.3 bA631M21.2 class VIII beta-tubulin tubulin, beta 8 class VIII Tubulins 778 2011-10-10 2015-12-17 2015-12-17 347688 ENSG00000261456 OTTHUMG00000174803 uc001ifi.3 AF355127 NM_177987 CCDS7051 Q3ZCM7 TUBB8 616768 objectId:2753 +HGNC:42182 TUBB8P1 tubulin beta 8 class VIII pseudogene 1 pseudogene pseudogene Approved 9p21.3 09p21.3 2013-01-23 2013-01-28 100418937 ENSG00000229298 OTTHUMG00000019684 NG_023793 PGOHUM00000261527 +HGNC:42334 TUBB8P2 tubulin beta 8 class VIII pseudogene 2 pseudogene pseudogene Approved 6q24.2 06q24.2 2013-01-23 2013-01-28 2013-01-28 106478982 ENSG00000218896 OTTHUMG00000015726 NG_044994 PGOHUM00000261440 +HGNC:42338 TUBB8P3 tubulin beta 8 class VIII pseudogene 3 pseudogene pseudogene Approved 4q25 04q25 2013-01-23 2013-01-28 132719 ENSG00000250307 OTTHUMG00000161049 NG_022071 PGOHUM00000246030 +HGNC:42185 TUBB8P4 tubulin beta 8 class VIII pseudogene 4 pseudogene pseudogene Approved 12p11.1 12p11.1 tubulin, beta 8 class VIII pseudogene 4 2013-01-23 2015-12-17 2015-12-17 260338 ENSG00000250788 OTTHUMG00000163440 NG_002343 PGOHUM00000239404 +HGNC:42186 TUBB8P5 tubulin beta 8 class VIII pseudogene 5 pseudogene pseudogene Approved 12q12 12q12 tubulin, beta 8 class VIII pseudogene 5 2013-01-23 2015-12-17 2015-12-17 121014 ENSG00000254381 OTTHUMG00000169395 NG_002327 PGOHUM00000239742 +HGNC:42343 TUBB8P6 tubulin beta 8 class VIII pseudogene 6 pseudogene pseudogene Approved 1q43 01q43 tubulin, beta 8 class VIII pseudogene 6 2013-01-23 2015-12-17 2015-12-17 200149 ENSG00000224625 OTTHUMG00000039866 NG_002335 PGOHUM00000296840 +HGNC:42345 TUBB8P7 tubulin beta 8 class VIII pseudogene 7 pseudogene pseudogene Approved 16q24.3 16q24.3 tubulin, beta 8 class VIII pseudogene 7 2013-01-23 2015-12-17 2015-12-17 197331 ENSG00000261812 OTTHUMG00000172847 NG_002334 +HGNC:42346 TUBB8P8 tubulin beta 8 class VIII pseudogene 8 pseudogene pseudogene Approved 3q29 03q29 tubulin, beta 8 class VIII pseudogene 8 2013-01-23 2015-12-17 2015-12-17 102723626 ENSG00000213113 OTTHUMG00000155372 PGOHUM00000238322 +HGNC:42347 TUBB8P9 tubulin beta 8 class VIII pseudogene 9 pseudogene pseudogene Approved 1q42.13 01q42.13 tubulin, beta 8 class VIII pseudogene 9 2013-01-23 2015-12-17 2015-12-17 255208 ENSG00000235827 OTTHUMG00000037623 NG_002338 PGOHUM00000296797 +HGNC:42348 TUBB8P10 tubulin beta 8 class VIII pseudogene 10 pseudogene pseudogene Approved 1q42.13 01q42.13 tubulin, beta 8 class VIII pseudogene 10 2013-01-23 2015-12-17 2015-12-17 391171 ENSG00000237469 OTTHUMG00000037622 NG_022755 PGOHUM00000296079 +HGNC:32337 TUBB8P11 tubulin beta 8 class VIII pseudogene 11 pseudogene pseudogene Approved 1p36.33 01p36.33 2013-01-23 2015-12-17 2015-12-17 388579 ENSG00000234711 OTTHUMG00000002470 NG_005336 PGOHUM00000296185 +HGNC:24983 TUBB8P12 tubulin beta 8 pseudogene 12 pseudogene pseudogene Approved 18p11.32 18p11.32 2015-05-18 2015-05-18 260334 ENSG00000173213 OTTHUMG00000163448 AF355126 NG_002339 11731935 +HGNC:12414 TUBBP1 tubulin beta pseudogene 1 pseudogene pseudogene Approved 8p12 08p12 "tubulin, beta polypeptide pseudogene 1|tubulin, beta pseudogene 1" 2001-06-22 2015-12-17 2015-12-17 92755 ENSG00000127589 OTTHUMG00000163834 J00317 NG_001206 7070533 PGOHUM00000261520 +HGNC:12415 TUBBP2 tubulin beta pseudogene 2 pseudogene pseudogene Approved 13q14.11 13q14.11 "tubulin, beta polypeptide pseudogene 2|tubulin, beta pseudogene 2" 2001-06-22 2015-12-17 2015-12-17 647000 ENSG00000214222 OTTHUMG00000016794 NG_011428 1685473 PGOHUM00000248382 +HGNC:18192 TUBBP3 tubulin beta pseudogene 3 pseudogene pseudogene Approved 14q21.2 14q21.2 "tubulin, beta polypeptide pseudogene 3|tubulin, beta pseudogene 3" 2003-01-13 2015-12-17 2015-12-17 326106 NG_002529 PGOHUM00000256742 +HGNC:19913 TUBBP4 tubulin beta pseudogene 4 pseudogene pseudogene Approved 9p13.3 09p13.3 bA537H15.5 "tubulin, beta polypeptide pseudogene 4|tubulin, beta pseudogene 4" 2004-11-22 2015-12-17 2015-12-17 493816 NG_032183 +HGNC:23674 TUBBP5 tubulin beta pseudogene 5 pseudogene pseudogene Approved 9q34.3 09q34.3 "tubulin, beta polypeptide pseudogene 5|tubulin, beta pseudogene 5" 2003-12-01 2015-12-17 2015-12-17 643224 ENSG00000159247 OTTHUMG00000021001 AF355123 NR_027156 11731935 +HGNC:42175 TUBBP6 tubulin beta class I pseudogene 6 pseudogene pseudogene Approved 7p11.2 07p11.2 tubulin, beta class I pseudogene 6 2013-01-23 2015-12-17 2015-12-17 442308 ENSG00000235207 OTTHUMG00000156117 NG_022946 PGOHUM00000233240 +HGNC:42176 TUBBP7 tubulin beta class I pseudogene 7 pseudogene pseudogene Approved 8q22.1 08q22.1 tubulin, beta class I pseudogene 7 2013-01-23 2015-12-17 2015-12-17 100533620 NG_028884 PGOHUM00000249438 +HGNC:42179 TUBBP8 tubulin beta class I pseudogene 8 pseudogene pseudogene Approved 15q13.1 15q13.1 tubulin, beta class I pseudogene 8 2013-01-23 2015-12-17 2015-12-17 101927519 ENSG00000259300 OTTHUMG00000172188 NG_046389 PGOHUM00000247034 +HGNC:42178 TUBBP9 tubulin beta class I pseudogene 9 pseudogene pseudogene Approved 6p21.2 06p21.2 tubulin, beta class I pseudogene 9 2013-01-23 2015-12-17 2015-12-17 442210 ENSG00000220586 OTTHUMG00000014655 NG_028263 +HGNC:42344 TUBBP10 tubulin beta class I pseudogene 10 pseudogene pseudogene Approved 1p32.3 01p32.3 tubulin, beta class I pseudogene 10 2013-01-23 2015-12-17 2015-12-17 100418902 ENSG00000226147 OTTHUMG00000008919 NG_027095 +HGNC:42184 TUBBP11 tubulin beta class I pseudogene 11 pseudogene pseudogene Approved 3q13.11 03q13.11 tubulin, beta class I pseudogene 11 2013-01-23 2015-12-17 2015-12-17 106480745 ENSG00000243195 OTTHUMG00000159180 NG_043757 PGOHUM00000238121 +HGNC:16811 TUBD1 tubulin delta 1 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "FLJ12709|TUBD" tubulin, delta 1 Tubulins 778 2004-04-20 2015-12-17 2015-12-17 51174 ENSG00000108423 OTTHUMG00000179885 uc002ixw.3 AF201333 NM_016261 "CCDS11620|CCDS54151|CCDS54152|CCDS54153|CCDS54154" Q9UJT1 10620804 MGI:1891826 RGD:1311967 TUBD1 607344 +HGNC:20775 TUBE1 tubulin epsilon 1 protein-coding gene gene with protein product Approved 6q21 06q21 "dJ142L7.2|FLJ22589|TUBE" tubulin, epsilon 1 Tubulins 778 2003-05-22 2015-12-17 2015-12-17 51175 ENSG00000074935 OTTHUMG00000015382 uc003pvq.4 AF201334 NM_016262 CCDS5100 Q9UJT0 10620804 MGI:1919174 RGD:1306048 TUBE1 607345 +HGNC:12417 TUBG1 tubulin gamma 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 TUBGCP1 TUBG "tubulin, gamma polypeptide|tubulin, gamma 1" Tubulins 778 2000-01-20 2015-12-17 2015-12-17 7283 ENSG00000131462 OTTHUMG00000180277 uc002ian.4 BC000619 NM_001070 CCDS11433 P23258 1904010 MGI:101834 RGD:628606 TUBG1 191135 +HGNC:12418 TUBG1P tubulin gamma 1 pseudogene pseudogene pseudogene Approved 7p13 07p13 tubulin, gamma 1 pseudogene 2000-01-20 2015-12-17 2015-12-17 442673 ENSG00000237972 OTTHUMG00000155247 AC004985 NG_009488 10903841 +HGNC:12419 TUBG2 tubulin gamma 2 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 tubulin, gamma 2 Tubulins 778 2000-01-20 2015-12-17 2015-12-17 27175 ENSG00000037042 OTTHUMG00000180640 uc010wgr.3 AF225971 NM_016437 CCDS32658 Q9NRH3 MGI:2144208 RGD:1585798 TUBG2 605785 +HGNC:18599 TUBGCP2 tubulin gamma complex associated protein 2 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 "GCP2|Spc97p|SPBC97" tubulin, gamma complex associated protein 2 2002-08-14 2015-12-17 2015-12-17 10844 ENSG00000130640 OTTHUMG00000019319 uc001lmg.2 AF042379 XM_017015595 "CCDS7676|CCDS58104|CCDS58105" Q9BSJ2 9566967 MGI:1921487 RGD:1309597 TUBGCP2 +HGNC:18598 TUBGCP3 tubulin gamma complex associated protein 3 protein-coding gene gene with protein product Approved 13q34 13q34 "GCP3|Spc98p|SPBC98" spindle pole body protein tubulin, gamma complex associated protein 3 2002-08-14 2015-12-17 2015-12-17 10426 ENSG00000126216 OTTHUMG00000017367 uc001vse.3 AF042378 NM_006322 "CCDS9525|CCDS66584|CCDS73599" Q96CW5 "9566967|9566969" MGI:2183752 RGD:1305726 TUBGCP3 +HGNC:16691 TUBGCP4 tubulin gamma complex associated protein 4 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "76P|FLJ14797" tubulin, gamma complex associated protein 4 2007-08-20 2015-12-17 2015-12-17 27229 ENSG00000137822 OTTHUMG00000176647 uc001zrn.5 AJ249677 NM_014444 "CCDS42030|CCDS66745" Q9UGJ1 10562286 MGI:1196293 RGD:1306924 TUBGCP4 609610 426086 +HGNC:18600 TUBGCP5 tubulin gamma complex associated protein 5 protein-coding gene gene with protein product Approved 15q11.2 15q11.2 "GCP5|KIAA1899" gamma-tubulin complex component GCP5 tubulin, gamma complex associated protein 5 2002-08-14 2015-12-17 2016-10-05 114791 ENSG00000275835 OTTHUMG00000188371 uc001yur.5 AB067486 NM_052903 "CCDS73697|CCDS73698" Q96RT8 11694571 MGI:2178836 RGD:1304689 TUBGCP5 608147 +HGNC:18127 TUBGCP6 tubulin gamma complex associated protein 6 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 "GCP6|KIAA1669|DJ402G11.6" gamma-tubulin complex component 6 tubulin, gamma complex associated protein 6 2002-08-14 2015-12-17 2016-10-05 85378 ENSG00000128159 OTTHUMG00000030150 uc003bkb.2 AB051456 NM_020461 CCDS14087 Q96RT7 "11694571|11258795" MGI:2146071 RGD:1307743 TUBGCP6 610053 304005 +HGNC:12420 TUFM Tu translation elongation factor, mitochondrial protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "EFTu|EF-TuMT|EFTU" 1997-04-10 2015-09-08 7284 ENSG00000178952 OTTHUMG00000097039 uc002drh.2 L38995 NM_003321 CCDS10642 P49411 "9332382|9545647" MGI:1923686 RGD:1305501 TUFM 602389 267235 +HGNC:12421 TUFMP1 Tu translation elongation factor, mitochondrial pseudogene 1 pseudogene pseudogene Approved 17q11.1 17q11.1 TUFML Tu translation elongation factor, mitochondrial-like 1997-04-10 2010-10-26 2010-10-26 2010-10-26 645668 ENSG00000265646 OTTHUMG00000179167 Y11796 NG_006578 9545647 PGOHUM00000236995 +HGNC:12422 TUFT1 tuftelin 1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 1993-08-24 2016-10-05 7286 ENSG00000143367 OTTHUMG00000012536 uc001eyl.3 AF254260 NM_020127 "CCDS1000|CCDS44223" Q9NNX1 7919663 MGI:109572 RGD:1310373 TUFT1 600087 +HGNC:26066 TUG1 taurine up-regulated 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 22q12.2 22q12.2 "FLJ20618|NCRNA00080|LINC00080" "non-protein coding RNA 80|long intergenic non-protein coding RNA 80" taurine upregulated 1 (non-protein coding) Long non-coding RNAs 788 2008-09-02 2013-10-14 2014-11-19 55000 ENSG00000253352 OTTHUMG00000030444 uc003ajh.4 AK057695 NR_002323 "15797018|22961206|23801869|24381249" MGI:2144114 RGD:9685395 614971 tug1 +HGNC:12423 TULP1 tubby like protein 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "TUBL1|LCA15" RP14 1998-01-06 2016-10-05 7287 ENSG00000112041 OTTHUMG00000014575 uc003okv.6 U82468 NM_003322 "CCDS4807|CCDS75436" O00294 "9096357|9521870" MGI:109571 RGD:1311062 Mutations of the Tubby-like Protein 1 Gene|http://www.retina-international.org/files/sci-news/tulpmut.htm TULP1 602280 120341 +HGNC:12424 TULP2 tubby like protein 2 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "TUBL2|CT65" cancer/testis antigen 65 1998-01-06 2016-10-05 7288 ENSG00000104804 OTTHUMG00000164406 uc002pkz.3 U82469 NM_003323 CCDS12739 O00295 9096357 MGI:1861600 RGD:1310551 TULP2 602309 +HGNC:12425 TULP3 tubby like protein 3 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 TUBL3 1998-05-11 2016-10-05 7289 ENSG00000078246 OTTHUMG00000168152 uc010seh.2 AF045583 NM_003324 "CCDS8519|CCDS53737" O75386 9828123 MGI:1329045 RGD:1585259 TULP3 604730 +HGNC:39262 TULP3P1 tubby like protein 3 pseudogene 1 pseudogene pseudogene Approved 13q32.1 13q32.1 2010-11-24 2011-08-15 100128017 ENSG00000234267 OTTHUMG00000017234 NG_011427 PGOHUM00000258716 +HGNC:15530 TULP4 tubby like protein 4 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "TUSP|KIAA1397" WD repeat domain containing 362 2003-05-28 2016-10-05 56995 ENSG00000130338 OTTHUMG00000015910 uc003qrf.4 NM_020245 "CCDS34561|CCDS34562" Q9NRJ4 11595174 MGI:1916092 RGD:1564487 TULP4 +HGNC:44088 TUNAR TCL1 upstream neural differentiation-associated RNA non-coding RNA RNA, long non-coding Approved 14q32.2 14q32.2 "TUNA|HI-LNC78" "Tcl1 upstream neuron-associated lincRNA|Human Islet Long Non Coding RNA 78" LINC00617 "long intergenic non-protein coding RNA 617|TCL1A upstream neural differentiation-associated RNA" Long non-coding RNAs 788 2012-06-20 2014-02-18 2014-03-04 2014-11-19 100507043 ENSG00000250366 OTTHUMG00000171392 AK023027 NR_038861 "24530304|22196729|23040067" MGI:1917202 615719 megamind +HGNC:31010 TUSC1 tumor suppressor candidate 1 protein-coding gene gene with protein product Approved 9p21.2 09p21.2 TSG-9 2004-08-25 2014-11-19 286319 ENSG00000198680 OTTHUMG00000159591 uc003zpx.4 AY168647 NM_001004125 CCDS34999 Q2TAM9 15208665 MGI:2684283 TUSC1 610529 +HGNC:17034 TUSC2 tumor suppressor candidate 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "FUS1|PAP|C3orf11" PDAP2 PDGFA associated protein 2 2003-09-25 2004-01-21 2004-01-20 2016-10-05 11334 ENSG00000114383 OTTHUMG00000156877 uc003czy.2 AF055479 NM_007275 CCDS2819 O75896 "8780057|11593436" MGI:1931086 RGD:1561664 TUSC2 607052 +HGNC:23963 TUSC2P1 tumor suppressor candidate 2 pseudogene 1 pseudogene pseudogene Approved Yp11.2 Yp11.2 TUSC2P tumor suppressor candidate 2 pseudogene 2009-10-22 2010-02-26 2010-02-26 2010-10-07 359794 NG_002812 12815422 +HGNC:30242 TUSC3 tumor suppressor candidate 3 protein-coding gene gene with protein product Approved 8p22 08p22 "MGC13453|N33|OST3A|MRT7" oligosaccharyltransferase 3 homolog A (S. cerevisiae) Oligosaccharyltransferase complex subunits 445 2004-01-20 2014-11-19 7991 ENSG00000104723 OTTHUMG00000094803 uc003wwt.4 AK026149 NM_006765 "CCDS5993|CCDS5994" Q13454 "8661104|10097140" MGI:1933134 RGD:1303318 TUSC3 601385 159945 +HGNC:29592 TUSC5 tumor suppressor candidate 5 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "LOST1|IFITMD3" "located at seventeen p thirteen point three 1|interferon induced transmembrane protein domain containing 3|Dispanin subfamily B member 1" 2004-05-24 2016-04-05 286753 ENSG00000184811 OTTHUMG00000132196 uc002fsi.1 AB090231 NM_172367 CCDS42225 Q8IXB3 "12660825|26629404" MGI:3029307 RGD:1307639 TUSC5 612211 +HGNC:27701 TUSC7 tumor suppressor candidate 7 (non-protein coding) non-coding RNA RNA, long non-coding Approved 3q13.31 03q13.31 "LINC00902|LOC285194" "NCRNA00295|LSAMP-AS3" "non-protein coding RNA 295|LSAMP antisense RNA 3" Long non-coding RNAs 788 2010-11-18 2013-05-21 2013-05-21 2014-10-22 285194 ENSG00000243197 OTTHUMG00000159329 BC035185 NR_015391 "20048075|23680400" 616057 LOC285194 +HGNC:49111 TUSC8 tumor suppressor candidate 8 (non-protein coding) non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 XLOC_010588 LINC01071 long intergenic non-protein coding RNA 1071 Long non-coding RNAs 788 2013-09-05 2014-03-31 2014-03-31 2014-07-18 400128 ENSG00000237361 OTTHUMG00000016834 BC025370 NR_104174 24667250 +HGNC:26184 TUT1 terminal uridylyl transferase 1, U6 snRNA-specific protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "FLJ22347|FLJ22267|FLJ21850|PAPD2|TUTase" "RNA uridylyltransferase|U6 TUTase|TUTase 6" RBM21 RNA binding motif protein 21 "RNA binding motif containing|Non-canonical poly(A) polymerases" "725|1318" 2004-04-07 2006-10-06 2006-10-06 2016-10-05 64852 ENSG00000149016 OTTHUMG00000158564 uc001nto.2 BC005013 NM_022830 CCDS8021 Q9H6E5 16790842 MGI:1917294 RGD:1561043 TUT1 610641 "2.7.7.52|2.7.7.19" +HGNC:20398 TVP23A trans-golgi network vesicle protein 23 homolog A protein-coding gene gene with protein product Approved 16p13.13 16p13.13 YDR084C FAM18A "family with sequence similarity 18, member A|trans-golgi network vesicle protein 23 homolog A (S. cerevisiae)" 2003-04-03 2012-11-29 2016-03-31 2016-10-05 780776 ENSG00000166676 OTTHUMG00000177389 uc059qtc.1 NM_001079512 CCDS45408 A6NH52 MGI:3665441 RGD:1566405 +HGNC:20399 TVP23B trans-golgi network vesicle protein 23 homolog B protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "CGI-148|YDR084C" "FAM18B|FAM18B1" "family with sequence similarity 18, member B|family with sequence similarity 18, member B1|trans-golgi network vesicle protein 23 homolog B (S. cerevisiae)" 2003-04-03 2012-11-29 2016-09-29 2016-09-29 51030 ENSG00000171928 OTTHUMG00000059052 uc002gum.3 AF151906 NM_016078 "CCDS42274|CCDS82084" Q9NYZ1 10810093 MGI:1914760 RGD:1586539 +HGNC:31127 TVP23BP1 TVP23B pseudogene 1 pseudogene pseudogene Approved 15q12 15q12 FAM18B3P "family with sequence similarity 18, member B3, pseudogene|trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) pseudogene 1" 2010-08-18 2012-11-29 2013-10-18 2016-07-25 100129124 ENSG00000259122 OTTHUMG00000171825 NG_022121 PGOHUM00000293145 +HGNC:38869 TVP23BP2 TVP23B pseudogene 2 pseudogene pseudogene Approved 2p13.1 02p13.1 FAM18B4P "family with sequence similarity 18, member B4, pseudogene|trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) pseudogene 2" 2010-08-18 2012-11-29 2013-10-18 2016-07-25 100421473 ENSG00000108442 OTTHUMG00000152917 NG_023571 PGOHUM00000297918 +HGNC:30453 TVP23C trans-golgi network vesicle protein 23 homolog C protein-coding gene gene with protein product Approved 17p12 17p12 MGC8763 FAM18B2 "family with sequence similarity 18, member B2|trans-golgi network vesicle protein 23 homolog C (S. cerevisiae)" 2005-08-25 2012-11-29 2016-09-29 2016-09-29 201158 ENSG00000175106 OTTHUMG00000171461 uc010cor.3 BC011952 NM_145301 "CCDS11170|CCDS45617" Q96ET8 +HGNC:42961 TVP23C-CDRT4 TVP23C-CDRT4 readthrough other readthrough Approved 17p12 17p12 FAM18B2-CDRT4 FAM18B2-CDRT4 readthrough 2011-09-28 2012-11-29 2012-11-29 2012-11-29 100533496 ENSG00000259024 OTTHUMG00000165004 uc032eus.2 NM_001204478 CCDS56021 +HGNC:44646 TVP23CP1 TVP23C pseudogene 1 pseudogene pseudogene Approved 7q21.13 07q21.13 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) pseudogene 1 2012-11-29 2013-10-18 2013-10-18 100421599 ENSG00000223584 OTTHUMG00000033493 NG_026605 PGOHUM00000233467 +HGNC:44647 TVP23CP2 TVP23C pseudogene 2 pseudogene pseudogene Approved 16p13.12 16p13.12 trans-golgi network vesicle protein 23 homolog C (S. cerevisiae) pseudogene 2 2012-11-29 2013-10-18 2013-10-18 261735 ENSG00000262470 OTTHUMG00000177382 NG_002361 PGOHUM00000248988 +HGNC:9620 TWF1 twinfilin actin binding protein 1 protein-coding gene gene with protein product Approved 12q12 12q12 A6 PTK9 "protein tyrosine kinase 9|PTK9 protein tyrosine kinase 9|twinfilin, actin-binding protein, homolog 1 (Drosophila)" 1997-12-17 2006-11-13 2015-04-29 2016-04-25 5756 ENSG00000151239 OTTHUMG00000169426 uc001roa.4 U02680 NM_002822 "CCDS31780|CCDS55818" Q12792 7507208 MGI:1100520 RGD:1311872 TWF1 610932 objectId:2266 +HGNC:21736 TWF1P1 twinfilin 1 pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 A6ps1 PTK9P1 protein tyrosine kinase 9 pseudogene 1 2005-01-19 2007-12-18 2007-12-18 2014-11-18 619519 ENSG00000178082 OTTHUMG00000179542 NG_005328 +HGNC:21737 TWF1P2 twinfilin 1 pseudogene 2 pseudogene pseudogene Approved Xq28 Xq28 A6ps2 PTK9P2 protein tyrosine kinase 9 pseudogene 2 2005-01-19 2007-12-18 2007-12-18 2014-11-18 494555 NG_007309 +HGNC:9621 TWF2 twinfilin actin binding protein 2 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "A6RP|A6r" PTK9L "protein tyrosine kinase 9-like (A6-related protein)|PTK9L protein tyrosine kinase 9-like (A6-related protein)|twinfilin, actin-binding protein, homolog 2 (Drosophila)" 1999-09-28 2006-11-13 2015-04-29 2016-10-05 11344 ENSG00000247596 OTTHUMG00000158105 uc003ddd.4 Y17169 NM_007284 CCDS2849 Q6IBS0 "10406962|12807912" MGI:1346078 RGD:1591460 TWF2 607433 objectId:2267 +HGNC:12428 TWIST1 twist family bHLH transcription factor 1 protein-coding gene gene with protein product Approved 7p21.1 07p21.1 "SCS|H-twist|BPES2|bHLHa38|CRS1" Saethre-Chotzen syndrome "ACS3|BPES3|TWIST|CRS" "blepharophimosis, epicanthus inversus and ptosis 3|acrocephalosyndactyly 3|twist homolog 1 (Drosophila)|twist basic helix-loop-helix transcription factor 1|craniosynostosis" Basic helix-loop-helix proteins 420 1997-07-01 2003-03-28 2013-10-17 2016-10-05 7291 ENSG00000122691 OTTHUMG00000090821 uc003sum.3 U80998 NM_000474 CCDS5367 Q15672 "8995765|11474656|17343269" MGI:98872 RGD:621455 TWIST1 601622 120345 +HGNC:20670 TWIST2 twist family bHLH transcription factor 2 protein-coding gene gene with protein product Approved 2q37.3 02q37.3 "DERMO1|Dermo-1|bHLHa39" "twist homolog 2 (Drosophila)|twist basic helix-loop-helix transcription factor 2" Basic helix-loop-helix proteins 420 2003-03-25 2013-10-17 2015-09-08 117581 ENSG00000233608 OTTHUMG00000152836 uc032owz.2 BC017907 NM_057179 CCDS46558 Q8WVJ9 "7589808|9061034" MGI:104685 RGD:621286 TWIST2 607556 239021 +HGNC:18027 TWISTNB TWIST neighbor protein-coding gene gene with protein product Approved 7p21.1 07p21.1 2003-01-22 2015-08-24 221830 ENSG00000105849 OTTHUMG00000152497 uc003sup.2 AK090846 NM_001002926 CCDS34606 Q3B726 12438708 MGI:106292 RGD:1307824 TWISTNB 608312 +HGNC:1160 TWNK twinkle mtDNA helicase protein-coding gene gene with protein product Approved 10q24.31 10q24.31 "PEO|PEO1|TWINKLE|FLJ21832|TWINL" T7 helicase-related protein with intramitochondrial nucleoid localization "IOSCA|C10orf2" "infantile onset spinocerebellar ataxia (autosomal recessive)|chromosome 10 open reading frame 2" DNA helicases 1167 2000-08-11 2016-10-11 2016-10-11 2016-10-11 56652 ENSG00000107815 OTTHUMG00000018917 uc001ksf.3 AF292004 NM_021830 "CCDS7506|CCDS53570" Q96RR1 "11431692|10645945|16135556" MGI:2137410 RGD:1307884 606075 159897 +HGNC:12429 TWSG1 twisted gastrulation BMP signaling modulator 1 protein-coding gene gene with protein product Approved 18p11.22 18p11.22 TSG twisted gastrulation homolog 1 (Drosophila) 2000-02-16 2013-10-03 2016-10-05 57045 ENSG00000128791 OTTHUMG00000131597 uc002knz.3 AA486291 NM_020648 CCDS11844 Q9GZX9 11260715 MGI:2137520 RGD:1311215 TWSG1 605049 +HGNC:12434 TXK TXK tyrosine kinase protein-coding gene gene with protein product Approved 4p12 04p12 "TKL|PSCTK5|BTKL|RLK" PTK4 PTK4 protein tyrosine kinase 4 SH2 domain containing 741 1994-12-08 2003-04-01 2015-08-27 7294 ENSG00000074966 OTTHUMG00000102065 uc003gxx.4 L27071 NM_003328 CCDS3480 P42681 "7951233|7528718" MGI:102960 RGD:1306481 TXK 600058 objectId:2268 2.7.10.1 +HGNC:30685 TXLNA taxilin alpha protein-coding gene gene with protein product Approved 1p35.2 01p35.2 DKFZp451J0118 2005-07-29 2016-10-05 200081 ENSG00000084652 OTTHUMG00000004423 uc001bui.4 AF516206 NM_175852 CCDS353 P40222 "15184072|14623251" MGI:105968 RGD:1583435 TXLNA 608676 +HGNC:21617 TXLNB taxilin beta protein-coding gene gene with protein product Approved 6q24.1 06q24.1 "DKFZp451A175|MDP77|dJ522B19.2" C6orf198 chromosome 6 open reading frame 198 2003-06-27 2005-07-29 2005-07-29 2016-10-05 167838 ENSG00000164440 OTTHUMG00000015688 uc063rxd.1 NM_153235 CCDS34545 Q8N3L3 15184072 MGI:2671945 RGD:1307979 TXLNB 611438 +HGNC:18578 TXLNG taxilin gamma protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "FLJ11209|LSR5|FIAT|MGC126621|MGC126625|TXLNGX" "lipopolysaccharide specific response-5 protein|factor inhibiting activating transcription factor 4 (ATF4)-mediated transcription" CXorf15 chromosome X open reading frame 15 2002-05-22 2010-04-20 2010-04-20 2014-11-19 55787 ENSG00000086712 OTTHUMG00000021196 uc004cxq.3 AK002071 NM_018360 "CCDS14178|CCDS55373" Q9NUQ3 "15911876|15184072|16831913" MGI:3590652 RGD:1564371 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=CXorf15 TXLNG 300677 +HGNC:18473 TXLNGY taxilin gamma pseudogene, Y-linked pseudogene pseudogene Approved Yq11.222-q11.223 Yq11.222-q11.223 "CYorf15A|CYorf15B|TXLNG2P" "chromosome Y open reading frame 15A|chromosome Y open reading frame 15B|taxilin gamma 2, pseudogene" 2002-05-22 2014-05-07 2014-05-07 2016-10-11 246126 ENSG00000131002 OTTHUMG00000036509 AF332224 NR_045128 Q9BZA5 400031 PGOHUM00000263540 +HGNC:12435 TXN thioredoxin protein-coding gene gene with protein product Approved 9q31.3 09q31.3 TRX 1990-02-05 2016-10-05 7295 ENSG00000136810 OTTHUMG00000020480 uc004bep.3 X77584 NM_003329 "CCDS35103|CCDS59139" P10599 MGI:98874 RGD:621157 TXN 187700 +HGNC:17772 TXN2 thioredoxin 2 protein-coding gene gene with protein product Approved 22q12.3 22q12.3 MT-TRX 2002-02-13 2016-10-05 25828 ENSG00000100348 OTTHUMG00000150596 uc003apk.2 U78678 NM_012473 CCDS13928 Q99757 "9006939|17220299" MGI:1929468 RGD:71040 TXN2 609063 +HGNC:16470 TXNDC2 thioredoxin domain containing 2 protein-coding gene gene with protein product Approved 18p11.31-p11.2 18p11.31-p11.2 SPTRX1 sperm-specific thioredoxin 1 thioredoxin domain containing 2 (spermatozoa) 2001-08-30 2007-08-16 2016-03-31 2016-03-31 84203 ENSG00000168454 OTTHUMG00000131602 uc002koh.5 AF080095 XM_017026041 "CCDS11846|CCDS42414" Q86VQ3 "11230166|11399755" MGI:2389312 RGD:1359251 TXNDC2 +HGNC:21073 TXNDC5 thioredoxin domain containing 5 protein-coding gene gene with protein product Approved 6p24.3 06p24.3 "MGC3178|FLJ21353|FLJ90810|EndoPDI|Hcc-2|ERp46|PDIA15" protein disulfide isomerase family A, member 15 "thioredoxin domain containing 5|thioredoxin domain containing 5 (endoplasmic reticulum)" Protein disulfide isomerases 692 2003-05-15 2016-03-31 2016-03-31 81567 ENSG00000239264 OTTHUMG00000014216 uc003mxv.4 AK025006 NM_030810 "CCDS4505|CCDS47369" Q8NBS9 MGI:2145316 RGD:2323973 TXNDC5 616412 +HGNC:31454 TXNDC8 thioredoxin domain containing 8 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "bA427L11.2|TRX6|SPTRX-3" sperm-specific thioredoxin 3 thioredoxin domain containing 8 (spermatozoa) 2004-05-27 2007-08-16 2016-03-31 2016-03-31 255220 ENSG00000204193 OTTHUMG00000020481 uc004bes.5 BC035743 NM_001003936 "CCDS35104|CCDS69639|CCDS75872" Q6A555 MGI:1914652 RGD:1303121 TXNDC8 +HGNC:24110 TXNDC9 thioredoxin domain containing 9 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 APACD 2004-05-12 2014-11-19 10190 ENSG00000115514 OTTHUMG00000130641 uc002szz.4 BC005968 NM_005783 CCDS2044 O14530 12477932 MGI:2138153 RGD:708355 TXNDC9 612564 +HGNC:28030 TXNDC11 thioredoxin domain containing 11 protein-coding gene gene with protein product Approved 16p13.13 16p13.13 EFP1 EF-hand binding protein 1 2005-01-07 2008-09-29 51061 ENSG00000153066 OTTHUMG00000177467 uc002dbg.2 BC013727 NM_015914 "CCDS32387|CCDS76822" Q6PKC3 "8619474|9110174" MGI:1923620 RGD:1307538 TXNDC11 +HGNC:24626 TXNDC12 thioredoxin domain containing 12 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "TLP19|ERP18|ERP19|hAG-1|AGR1|PDIA16" "endoplasmic reticulum thioredoxin superfamily member, 18 kDa|anterior gradient homolog 1 (Xenopus laevis)|protein disulfide isomerase family A, member 16" thioredoxin domain containing 12 (endoplasmic reticulum) Protein disulfide isomerases 692 2005-06-06 2016-03-31 2016-03-31 51060 ENSG00000117862 OTTHUMG00000008629 uc001cti.5 AF131758 NM_015913 CCDS561 O95881 "8619474|9110174" MGI:1913323 RGD:1305960 TXNDC12 609448 +HGNC:30008 TXNDC12-AS1 TXNDC12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p32.3 01p32.3 2013-09-05 2014-11-19 104355143 ENSG00000228369 OTTHUMG00000008632 AI221303 NR_126385 +HGNC:20652 TXNDC15 thioredoxin domain containing 15 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "2310047H23Rik|FLJ22625" C5orf14 chromosome 5 open reading frame 14 2004-04-27 2007-08-16 2007-08-16 2015-08-24 79770 ENSG00000113621 OTTHUMG00000129115 uc003lac.2 AK026278 NM_024715 CCDS4180 Q96J42 MGI:1916922 RGD:1304696 TXNDC15 +HGNC:19965 TXNDC16 thioredoxin domain containing 16 protein-coding gene gene with protein product Approved 14q22.1 14q22.1 KIAA1344 KIAA1344 2003-11-21 2007-08-16 2007-08-16 2015-08-24 57544 ENSG00000087301 OTTHUMG00000171103 uc001wzs.4 AB037765 XM_051699 CCDS32083 Q9P2K2 MGI:1917811 RGD:1306755 TXNDC16 616179 +HGNC:28218 TXNDC17 thioredoxin domain containing 17 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MGC14353|TRP14" thioredoxin (Trx)-related protein, 14 kDa TXNL5 thioredoxin-like 5 2004-03-05 2007-08-16 2007-08-16 2016-10-05 84817 ENSG00000129235 OTTHUMG00000102053 uc002gdf.5 BC006405 NM_032731 CCDS11077 Q9BRA2 "14607844|14607843" MGI:1289248 RGD:1308868 TXNDC17 616967 +HGNC:16952 TXNIP thioredoxin interacting protein protein-coding gene gene with protein product Approved 1q21.1 01q21.1 "VDUP1|EST01027|HHCPA78|THIF|ARRDC6" "upregulated by 1,25-dihydroxyvitamin D-3|thioredoxin binding protein 2" Alpha arrestins 1311 2001-12-12 2016-10-05 10628 ENSG00000265972 OTTHUMG00000013755 uc031utr.2 S73591 NM_006472 "CCDS72876|CCDS81368" Q9H3M7 8086474 MGI:1889549 RGD:620886 TXNIP 606599 +HGNC:12436 TXNL1 thioredoxin like 1 protein-coding gene gene with protein product Approved 18q21.31 18q21.31 "Txl|TRP32" thioredoxin-like, 32kD TXNL "thioredoxin-like, 32kDa|thioredoxin-like 1" 1998-11-26 2004-05-07 2015-12-01 2015-12-01 9352 ENSG00000091164 OTTHUMG00000132722 uc002lgi.4 AF003938 XM_006722580 CCDS11961 O43396 "9473519|9668102" MGI:1860078 RGD:621717 TXNL1 603049 +HGNC:39459 TXNL1P1 thioredoxin like 1 pseudogene 1 pseudogene pseudogene Approved 13q31.1 13q31.1 thioredoxin-like 1 pseudogene 1 2011-01-17 2015-12-01 2015-12-01 100419095 ENSG00000231879 OTTHUMG00000017161 NG_024942 PGOHUM00000248656 +HGNC:30551 TXNL4A thioredoxin like 4A protein-coding gene gene with protein product Approved 18q23 18q23 "U5-15kD|DIM1|HsT161|DIB1|SNRNP15" similar to S. pombe dim1+ TXNL4 "thioredoxin-like 4|thioredoxin-like 4A" 2004-01-08 2004-08-12 2015-12-01 2015-12-01 10907 ENSG00000141759 OTTHUMG00000180376 uc002lnp.4 AF023612 NM_006701 "CCDS32852|CCDS82260" P83876 11015569 MGI:1351613 RGD:6492735 TXNL4A 611595 419132 +HGNC:26041 TXNL4B thioredoxin like 4B protein-coding gene gene with protein product Approved 16q22.2 16q22.2 "FLJ20511|DLP|Dim2" thioredoxin-like 4B 2004-08-11 2015-12-01 2015-12-01 54957 ENSG00000140830 OTTHUMG00000173453 uc010vmn.3 BC009646 NM_017853 CCDS10906 Q9NX01 15161931 MGI:2443724 RGD:1305127 TXNL4B +HGNC:49481 TXNP1 thioredoxin pseudogene 1 pseudogene pseudogene Approved 10q26.11 10q26.11 2013-12-20 2013-12-20 93202 ENSG00000232823 OTTHUMG00000019154 NG_001297 PGOHUM00000238638 +HGNC:49482 TXNP2 thioredoxin pseudogene 2 pseudogene pseudogene Approved 1p31.2 01p31.2 2013-12-20 2013-12-20 171416 ENSG00000225167 OTTHUMG00000009205 NG_001321 PGOHUM00000244067 +HGNC:49483 TXNP3 thioredoxin pseudogene 3 pseudogene pseudogene Approved 1p13.2 01p13.2 2013-12-20 2013-12-20 171419 ENSG00000234388 OTTHUMG00000011153 NG_001324 PGOHUM00000244850 +HGNC:49484 TXNP4 thioredoxin pseudogene 4 pseudogene pseudogene Approved 17p13.2 17p13.2 2013-12-20 2013-12-20 124974 ENSG00000262519 OTTHUMG00000177829 NG_001303 PGOHUM00000237203 +HGNC:49485 TXNP5 thioredoxin pseudogene 5 pseudogene pseudogene Approved 2q23.2 02q23.2 2013-12-20 2013-12-20 151276 ENSG00000228236 OTTHUMG00000153761 NG_001309 PGOHUM00000240383 +HGNC:49486 TXNP6 thioredoxin pseudogene 6 pseudogene pseudogene Approved 4q21.1 04q21.1 2013-12-20 2013-12-20 171560 ENSG00000234036 OTTHUMG00000160877 NG_001330 PGOHUM00000245597 +HGNC:49487 TXNP7 thioredoxin pseudogene 7 pseudogene pseudogene Approved 6q13 06q13 2013-12-20 2013-12-20 106480275 ENSG00000217268 OTTHUMG00000015041 NG_044064 PGOHUM00000243250 +HGNC:12437 TXNRD1 thioredoxin reductase 1 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 "TXNR|GRIM-12|Trxr1" Selenoproteins 890 1996-12-30 2016-01-15 7296 ENSG00000198431 OTTHUMG00000166481 uc021rcx.3 NM_003330 "CCDS53820|CCDS53821|CCDS53823|CCDS58274" Q16881 7589432 MGI:1354175 RGD:61959 TXNRD1 601112 +HGNC:18155 TXNRD2 thioredoxin reductase 2 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "TR|TRXR2|TR3" "thioredoxin reductase beta|selenoprotein Z" Selenoproteins 890 2002-02-22 2016-10-12 10587 ENSG00000184470 OTTHUMG00000149975 uc021wlj.4 AF106697 NM_006440 "CCDS42981|CCDS63402" Q9NNW7 "9923614|10215850|11012661" MGI:1347023 RGD:61960 LRG_417|http://www.lrg-sequence.org/LRG/LRG_417 TXNRD2 606448 286619 +HGNC:20667 TXNRD3 thioredoxin reductase 3 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "TR2|TRXR3|TGR" thioredoxin glutathione reductase Selenoproteins 890 2003-09-11 2016-10-05 114112 ENSG00000197763 OTTHUMG00000162733 uc003ejd.3 AF133519 XM_051264 "CCDS77810|CCDS77811" Q86VQ6 "10455115|12530083" MGI:2386711 RGD:1308363 TXNRD3 606235 +HGNC:33870 TXNRD3NB thioredoxin reductase 3 neighbor protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "TR2IT1|TXNRD3NT1" thioredoxin reductase 3 new transcript 1 TXNRD3IT1 thioredoxin reductase 3 intronic transcript 1 2009-06-12 2011-04-13 2011-04-13 2011-04-13 645840 ENSG00000206483 OTTHUMG00000162732 uc062nlb.1 BC130546 NM_001039783 CCDS33846 Q6F5E7 15674732 TXNRD3NB +HGNC:12440 TYK2 tyrosine kinase 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 JTK1 FERM domain containing 1293 1990-09-10 2016-10-12 7297 ENSG00000105397 OTTHUMG00000166373 uc002moc.5 XM_011528246 CCDS12236 P29597 2156206 MGI:1929470 RGD:2320469 "TYK2base: Mutation registry for TYK2 deficiency|http://structure.bmc.lu.se/idbase/TYK2base/|LRG_121|http://www.lrg-sequence.org/LRG/LRG_121" TYK2 176941 159075 objectId:2269 2.7.10.1 +HGNC:3148 TYMP thymidine phosphorylase protein-coding gene gene with protein product Approved 22q13.33 22q13.33 gliostatin "MNGIE|ECGF1" endothelial cell growth factor 1 (platelet-derived) Minor histocompatibility antigens 870 1991-06-27 2008-01-21 2008-01-21 2016-10-12 1890 ENSG00000025708 OTTHUMG00000150249 uc003bmc.7 M63193 NM_001953 "CCDS14096|CCDS58811" P19971 "1590793|11733540" MGI:1920212 RGD:1305756 LRG_727|http://www.lrg-sequence.org/LRG/LRG_727 TYMP 131222 159550 2.4.2.4 +HGNC:12441 TYMS thymidylate synthetase protein-coding gene gene with protein product Approved 18p11.32 18p11.32 "Tsase|TMS|HsT422" TS 1990-09-10 2016-10-12 7298 ENSG00000176890 OTTHUMG00000131473 uc010dka.2 X02308 NM_001071 CCDS11821 P04818 MGI:98878 RGD:3921 LRG_783|http://www.lrg-sequence.org/LRG/LRG_783 TYMS 188350 241969 objectId:2642 2.1.1.45 +HGNC:29553 TYMSOS TYMS opposite strand other unknown Approved 18p11.32 18p11.32 C18orf56 chromosome 18 open reading frame 56 2005-01-12 2014-05-21 2014-05-21 2014-11-19 494514 ENSG00000176912 OTTHUMG00000178257 BC028301 NM_001012716 Q8TAI1 +HGNC:52351 TYMSP1 thymidylate synthetase pseudogene 1 pseudogene pseudogene Approved 6q16.1 06q16.1 2016-07-28 2016-07-28 100419610 ENSG00000219139 OTTHUMG00000015241 NG_025965 PGOHUM00000301892 +HGNC:52352 TYMSP2 thymidylate synthetase pseudogene 2 pseudogene pseudogene Approved 19q13.12 19q13.12 2016-07-28 2016-07-28 ENSG00000267190 OTTHUMG00000182260 PGOHUM00000294986 +HGNC:12442 TYR tyrosinase protein-coding gene gene with protein product Approved 11q14.3 11q14.3 "OCAIA|OCA1A|OCA1" oculocutaneous albinism IA 1988-08-16 2012-09-28 2015-08-24 7299 ENSG00000077498 OTTHUMG00000167294 uc001pcs.4 M27160 NM_000372 CCDS8284 P14679 MGI:98880 RGD:1589755 "Albinism Database|http://albinismdb.med.umn.edu/|Mutations of the Tyrosinase Gene|http://www.retina-international.org/files/sci-news/tyrmut.htm" TYR 606933 120353 objectId:2643 1.14.18.1 +HGNC:12443 TYRL tyrosinase-like (pseudogene) pseudogene pseudogene Approved 11p11.12 11p11.12 tyrosinase-like 1988-08-16 2008-03-11 2016-10-05 7300 ENSG00000123447 OTTHUMG00000166674 M63240 NG_001529 "1903356|8234203|17355913" 191270 PGOHUM00000257815 +HGNC:12446 TYRO3 TYRO3 protein tyrosine kinase protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "Dtk|Brt|Tif|Sky|Etk-2|Rek" RSE "Receptor Tyrosine Kinases|Fibronectin type III domain containing|I-set domain containing|Immunoglobulin like domain containing" "321|555|593|594" 1992-10-02 2016-10-05 7301 ENSG00000092445 OTTHUMG00000130341 uc001zof.3 D50479 XM_017022542 "CCDS10080|CCDS81866" Q06418 7851890 MGI:104294 RGD:3923 TYRO3 600341 objectId:1836 2.7.10.1 +HGNC:12447 TYRO3P TYRO3P protein tyrosine kinase pseudogene pseudogene pseudogene Approved 15q24.2 15q24.2 1992-10-02 2012-04-04 7302 ENSG00000259581 OTTHUMG00000172619 X72887 NR_028510 7851890 PGOHUM00000262065 +HGNC:12449 TYROBP TYRO protein tyrosine kinase binding protein protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "DAP12|PLO-SL|KARAP" "killer activating receptor associated protein|DNAX-activation protein 12" PLOSL 1998-06-25 2016-10-12 7305 ENSG00000011600 OTTHUMG00000181739 uc002ocm.4 AF019563 NM_003332 "CCDS12482|CCDS46058|CCDS54255|CCDS59378" O43914 "9490415|10888890" MGI:1277211 RGD:1303081 LRG_607|http://www.lrg-sequence.org/LRG/LRG_607 TYROBP 604142 120356 +HGNC:12450 TYRP1 tyrosinase related protein 1 protein-coding gene gene with protein product Approved 9p23 09p23 "GP75|CATB|TRP|b-PROTEIN|OCA3" "TYRP|CAS2" 1991-09-04 2016-04-19 2016-04-19 7306 ENSG00000107165 OTTHUMG00000021034 uc003zkv.5 L33830 NM_000550 CCDS34990 P17643 9434945 MGI:98881 RGD:1593266 "Mutations of the Tyrosinase-related Protein 1 Gene|http://www.retina-international.org/files/sci-news/trp1mut.htm|Albinism Database|http://albinismdb.med.umn.edu/" TYRP1 115501 120361 +HGNC:12452 TYS sclerotylosis phenotype phenotype only Approved 4q 04q 1986-01-01 1986-01-01 7303 181600 +HGNC:28531 TYSND1 trypsin domain containing 1 protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "MGC34695|NET41" peroxisomal cysteine endopeptidase 2004-05-27 2006-09-21 2015-08-24 219743 ENSG00000156521 OTTHUMG00000018397 uc001jqr.5 BC016840 NM_173555 "CCDS31213|CCDS31214" Q2T9J0 17255948 MGI:1919017 RGD:1307354 TYSND1 611017 S01.286 +HGNC:25598 TYW1 tRNA-yW synthesizing protein 1 homolog protein-coding gene gene with protein product Approved 7q11.21 07q11.21 "FLJ10900|MGC23001|MGC60291|YPL207W|TYW1A" tRNA-yW synthesizing protein 1 homolog A (S. cerevisiae) RSAFD1 "radical S-adenosyl methionine and flavodoxin domains 1|tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)" 2004-11-08 2007-11-29 2015-11-19 2015-11-19 55253 ENSG00000198874 OTTHUMG00000129723 uc003tvn.5 AK001762 NM_018264 CCDS5538 Q9NV66 "16162496|17150819" MGI:2141161 RGD:1310420 TYW1 611243 +HGNC:33908 TYW1B tRNA-yW synthesizing protein 1 homolog B protein-coding gene gene with protein product Approved 7q11.22-q11.23 07q11.22-q11.23 "RSAFD2|MGC87315|NCRNA00069|LINC00069" "radical S-adenosyl methionine and flavodoxin domains 1|non-protein coding RNA 69|long intergenic non-protein coding RNA 69" "tRNA-yW synthesizing protein 1 homolog B (non-protein coding)|tRNA-yW synthesizing protein 1 homolog B (S. cerevisiae)" 2007-11-29 2015-11-19 2016-10-11 441250 ENSG00000277149 OTTHUMG00000157067 uc032zqb.2 BC068520 NM_001145440 CCDS69309 Q6NUM6 MGI:2141161 +HGNC:41905 TYW1P1 tRNA-yW synthesizing protein 1 homolog pseudogene 1 pseudogene pseudogene Approved 2p22.3 02p22.3 2011-05-09 2011-05-09 100533847 NG_028887 +HGNC:24757 TYW3 tRNA-yW synthesizing protein 3 homolog protein-coding gene gene with protein product Approved 1p31.1 01p31.1 FLJ40918 C1orf171 "chromosome 1 open reading frame 171|tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)" 2005-07-20 2006-05-25 2015-11-19 2015-11-19 127253 ENSG00000162623 OTTHUMG00000009641 uc001dgn.4 BX647591 NM_138467 "CCDS666|CCDS53334" Q6IPR3 17150819 MGI:2445040 RGD:1559623 TYW3 611245 +HGNC:26754 TYW5 tRNA-yW synthesizing protein 5 protein-coding gene gene with protein product Approved 2q33.1 02q33.1 FLJ37953 C2orf60 chromosome 2 open reading frame 60 2007-07-10 2011-05-09 2011-05-09 2014-11-18 129450 ENSG00000162971 OTTHUMG00000132770 uc002uvi.5 AK095272 NM_001039693 CCDS42795 A2RUC4 20739293 MGI:1915986 RGD:1311269 TYW5 +HGNC:12453 U2AF1 U2 small nuclear RNA auxiliary factor 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "U2AF35|RNU2AF1|RN" U2AFBP "U2(RNU2) small nuclear RNA auxiliary factor binding protein|U2(RNU2) small nuclear RNA auxiliary factor 1" RNA binding motif containing 725 1994-11-10 2006-04-11 2016-10-12 7307 ENSG00000160201 OTTHUMG00000086836 uc002zdb.2 BC001177 NM_006758 "CCDS13694|CCDS33574|CCDS42948" Q01081 "8660980|7956352" MGI:98884 RGD:1584190 LRG_615|http://www.lrg-sequence.org/LRG/LRG_615 U2AF1 191317 +HGNC:23020 U2AF1L4 U2 small nuclear RNA auxiliary factor 1 like 4 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "MGC33901|U2af26" U2AF1L3 U2(RNU2) small nuclear RNA auxiliary factor 1-like 3 RNA binding motif containing 725 2003-09-24 2006-04-12 2016-07-11 2016-07-11 199746 ENSG00000161265 OTTHUMG00000182066 uc060xho.1 "BC021186|AY569437" NM_144987 "CCDS12473|CCDS42551" Q8WU68 "8586425|11739736" MGI:2678374 RGD:1305600 U2AF1L4 601080 +HGNC:51830 U2AF1L5 U2 small nuclear RNA auxiliary factor 1 like 5 protein-coding gene gene with protein product Approved 21p12 21p12 2015-07-24 2016-07-11 2016-07-11 102724594 ENSG00000275895 OTTHUMG00000189373 NM_001320651 "CCDS82648|CCDS82649|CCDS82650" P0DN76 +HGNC:23156 U2AF2 U2 small nuclear RNA auxiliary factor 2 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 U2AF65 "U2 small nuclear ribonucleoprotein auxiliary factor (65kD)|splicing factor U2AF 65 kD subunit|U2 snRNP auxiliary factor large subunit" U2 (RNU2) small nuclear RNA auxiliary factor 2 RNA binding motif containing 725 2003-10-28 2006-04-11 2016-10-12 11338 ENSG00000063244 OTTHUMG00000180908 uc002qlu.4 BC008740 NM_007279 "CCDS12933|CCDS46197" P26368 1538748 MGI:98886 RGD:1310690 LRG_623|http://www.lrg-sequence.org/LRG/LRG_623 U2AF2 191318 +HGNC:30855 U2SURP U2 snRNP associated SURP domain containing protein-coding gene gene with protein product Approved 3q23 03q23 "fSAPa|SR140" "functional spliceosome-associated protein a|Ser/Arg-rich domain protein, 140 kDa|U2 associated SR140 protein" U2 snRNP-associated SURP domain containing RNA binding motif containing 725 2011-02-07 2016-04-04 2016-04-04 23350 ENSG00000163714 OTTHUMG00000159323 uc003evh.2 BK000564 NM_001080415 CCDS46928 O15042 "9205841|12234937" MGI:1915208 RGD:1307882 U2SURP +HGNC:15947 UACA uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding gene gene with protein product Approved 15q23 15q23 "FLJ10128|KIAA1561" nucling Ankyrin repeat domain containing 403 2001-06-29 2016-10-05 55075 ENSG00000137831 OTTHUMG00000133363 uc002asr.4 AF322916 XM_011521752 "CCDS10235|CCDS32280" Q9BZF9 "11162650|10997877" MGI:1919815 RGD:1560011 UACA 612516 +HGNC:12457 UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "AGX1|AgX" "UDP-N-acetylglucosamine diphosphorylase 1|UDP-N-acetylhexosamine pyrophosphorylase 1" SPAG2 1998-11-26 2014-07-31 2016-10-05 6675 ENSG00000117143 OTTHUMG00000034419 uc001gce.5 AB011004 NM_003115 "CCDS1240|CCDS81393|CCDS81394" Q16222 "9603950|8025165" MGI:1334459 RGD:1561967 UAP1 602862 2.7.7.23 +HGNC:28082 UAP1L1 UDP-N-acetylglucosamine pyrophosphorylase 1 like 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 2004-01-29 2014-07-31 2015-08-27 91373 ENSG00000197355 OTTHUMG00000020962 uc010ncb.3 AK022632 XM_038063 CCDS7028 Q3KQV9 MGI:2443318 RGD:1310630 UAP1L1 +HGNC:12469 UBA1 ubiquitin like modifier activating enzyme 1 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "UBE1X|POC20|CFAP124" "UBA1, ubiquitin-activating enzyme E1 homolog (yeast)|POC20 centriolar protein homolog (Chlamydomonas)" "A1S9T|GXP1|UBE1" "ubiquitin-activating enzyme E1 (A1S9T and BN75 temperature sensitivity complementing)|ubiquitin-activating enzyme E1|ubiquitin-like modifier activating enzyme 1" Ubiquitin like modifier activating enzymes 100 1991-07-11 2007-11-30 2016-01-27 2016-10-05 7317 ENSG00000130985 OTTHUMG00000021436 uc004dhj.5 AF258566 NM_003334 CCDS14275 P22314 1845793 MGI:98890 RGD:1359327 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=UBA1 UBA1 314370 140036 6.3.2.19 +HGNC:30661 UBA2 ubiquitin like modifier activating enzyme 2 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "FLJ13058|HRIHFB2115|ARX" UBA2, ubiquitin-activating enzyme E1 homolog (yeast) SAE2 "SUMO1 activating enzyme subunit 2|ubiquitin-like modifier activating enzyme 2" Ubiquitin like modifier activating enzymes 100 2006-10-31 2007-11-30 2016-01-27 2016-01-27 10054 ENSG00000126261 OTTHUMG00000182090 uc002nvk.4 BC003153 NM_005499 CCDS12439 Q9UBT2 "10187858|9920803" MGI:1858313 RGD:1312023 UBA2 613295 +HGNC:12470 UBA3 ubiquitin like modifier activating enzyme 3 protein-coding gene gene with protein product Approved 3p14.1 03p14.1 "hUba3|NAE2" "NEDD8-activating enzyme E1 catalytic subunit|NEDD8-activating enzyme E1 subunit 2" UBE1C "ubiquitin-activating enzyme E1C (homologous to yeast UBA3)|ubiquitin-activating enzyme E1C (UBA3 homolog, yeast)|ubiquitin-like modifier activating enzyme 3" Ubiquitin like modifier activating enzymes 100 1999-01-22 2007-11-30 2016-01-27 2016-01-27 9039 ENSG00000144744 OTTHUMG00000154325 uc003dno.4 AB012190 NM_198195 "CCDS2909|CCDS2910" Q8TBC4 9694792 MGI:1341217 RGD:621084 UBA3 603172 +HGNC:23230 UBA5 ubiquitin like modifier activating enzyme 5 protein-coding gene gene with protein product Approved 3q22.1 03q22.1 FLJ23251 UBA5, ubiquitin-activating enzyme E1 homolog (yeast) UBE1DC1 "ubiquitin-activating enzyme E1-domain containing 1|ubiquitin-like modifier activating enzyme 5" Ubiquitin like modifier activating enzymes 100 2003-10-28 2007-11-30 2016-01-27 2016-10-05 79876 ENSG00000081307 OTTHUMG00000159759 uc003epa.5 AY253672 NM_024818 "CCDS3076|CCDS3077" Q9GZZ9 "11230166|15071506" MGI:1913913 RGD:1311702 UBA5 610552 +HGNC:25581 UBA6 ubiquitin like modifier activating enzyme 6 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 FLJ10808 UBA6, ubiquitin-activating enzyme E1 UBE1L2 "ubiquitin-activating enzyme E1-like 2|ubiquitin-like modifier activating enzyme 6" Ubiquitin like modifier activating enzymes 100 2006-02-14 2007-11-30 2016-01-27 2016-01-27 55236 ENSG00000033178 OTTHUMG00000129299 uc003hdg.5 AK094164 NM_018227 CCDS3516 A0AVT1 17580310 MGI:1913894 RGD:1308324 UBA6 611361 +HGNC:49083 UBA6-AS1 UBA6 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4q13.2 04q13.2 LOC550112 2013-08-23 2014-01-15 550112 ENSG00000248049 OTTHUMG00000160769 NR_015439 +HGNC:12471 UBA7 ubiquitin like modifier activating enzyme 7 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "D8|UBE2|UBA1B" "UBA1, ubiquitin-activating enzyme E1 homolog B (yeast)|UBA7, ubiquitin-activating enzyme E1" UBE1L "ubiquitin-activating enzyme E1-like|ubiquitin-like modifier activating enzyme 7" Ubiquitin like modifier activating enzymes 100 1993-11-24 2007-11-30 2016-01-27 2016-10-05 7318 ENSG00000182179 OTTHUMG00000158267 uc003cxr.4 BC006378 NM_003335 CCDS2805 P41226 8327486 MGI:1349462 RGD:1308323 UBA7 191325 +HGNC:12458 UBA52 ubiquitin A-52 residue ribosomal protein fusion product 1 protein-coding gene gene with protein product Approved 19p13.1-p12 19p13.1-p12 "RPL40|CEP52|HUBCEP52|MGC57125|MGC126879|MGC126881|L40" "ribosomal protein L40|ubiquitin-52 amino acid fusion protein|ubiquitin carboxyl extension protein 52|60S ribosomal protein L40|ubiquitin-CEP52" L ribosomal proteins 729 1992-07-31 2015-08-26 7311 ENSG00000221983 OTTHUMG00000183110 uc002njr.4 NM_003333 CCDS12382 P62987 8188300 MGI:98887 RGD:68344 UBA52 191321 +HGNC:12459 UBA52P1 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 1 pseudogene pseudogene Approved 7p15.2 07p15.2 2009-03-01 2014-11-19 7312 M62405 NG_001207 "1330885|19123937" +HGNC:12460 UBA52P2 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 2 pseudogene pseudogene Approved 14q11.2 14q11.2 2009-03-01 2014-11-19 7313 M62406 NG_001208 "1330885|19123937" +HGNC:20056 UBA52P3 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 3 pseudogene pseudogene Approved 14q23.1 14q23.1 2009-03-01 2014-11-19 122837 ENSG00000243023 OTTHUMG00000158053 NG_002524 19123937 PGOHUM00000248185 +HGNC:35929 UBA52P4 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 4 pseudogene pseudogene Approved 3p22 03p22 2009-03-06 2009-03-11 100271030 NG_010942 19123937 +HGNC:36993 UBA52P5 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 5 pseudogene pseudogene Approved 8q24.13 08q24.13 2009-03-06 2009-03-11 100271031 ENSG00000243498 OTTHUMG00000158695 NG_010950 19123937 +HGNC:36763 UBA52P6 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 6 pseudogene pseudogene Approved 9p21.3 09p21.3 2009-03-06 2014-11-19 100130239 ENSG00000215221 OTTHUMG00000019688 NG_010990 19123937 +HGNC:36615 UBA52P7 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 7 pseudogene pseudogene Approved 12q24.21 12q24.21 2009-03-06 2009-03-11 100128617 ENSG00000241656 OTTHUMG00000158498 NG_010545 19123937 +HGNC:35625 UBA52P8 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 8 pseudogene pseudogene Approved 16q12 16q12 2009-03-06 2009-03-11 100271343 ENSG00000240793 OTTHUMG00000158140 NG_011237 19123937 +HGNC:36169 UBA52P9 ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 9 pseudogene pseudogene Approved 18q11.2-q12.1 18q11.2-q12.1 2009-03-06 2009-03-11 100271344 ENSG00000244329 OTTHUMG00000158402 NG_011241 19123937 +HGNC:30221 UBAC1 UBA domain containing 1 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 "GBDR1|KPC2" Kip1 ubiquitination-promoting complex subunit 2 UBADC1 ubiquitin associated domain containing 1 2004-01-27 2007-04-20 2007-04-20 2016-08-02 10422 ENSG00000130560 OTTHUMG00000020920 uc004cgt.3 AF176796 NM_016172 CCDS35177 Q9BSL1 "10857748|8619474|15531880" MGI:1920995 RGD:1359542 UBAC1 608129 C19.M01 +HGNC:20486 UBAC2 UBA domain containing 2 protein-coding gene gene with protein product Approved 13q32.3 13q32.3 "FLJ30548|RP11-178C10.1" PHGDHL1 phosphoglycerate dehydrogenase like 1 Rhomboid family 926 2003-02-28 2007-04-20 2007-04-20 2015-08-26 337867 ENSG00000134882 OTTHUMG00000017267 uc001voa.5 AK055110 NM_177967 "CCDS9490|CCDS45064" Q8NBM4 MGI:1916139 RGD:1311689 UBAC2 285499 +HGNC:42502 UBAC2-AS1 UBAC2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q32.3 13q32.3 UBAC2 antisense RNA 1 (non-protein coding) 2011-08-02 2012-08-15 2014-11-19 100289373 ENSG00000228889 OTTHUMG00000017261 uc001vny.3 NR_036531 +HGNC:39685 UBAC2-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2013-02-18 +HGNC:29576 UBALD1 UBA like domain containing 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FAM100A "family with sequence similarity 100, member A|UBA-like domain containing 1" 2005-11-14 2012-11-30 2016-01-27 2016-01-27 124402 ENSG00000153443 OTTHUMG00000129472 uc002cwx.2 BC025327 NM_145253 "CCDS10518|CCDS81944" Q8TB05 MGI:1916255 RGD:1359443 +HGNC:28438 UBALD2 UBA like domain containing 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 MGC29814 FAM100B "family with sequence similarity 100, member B|UBA-like domain containing 2" 2005-11-14 2012-11-30 2016-01-27 2016-01-27 283991 ENSG00000185262 OTTHUMG00000132666 uc010wsy.2 NM_182565 CCDS11742 Q8IYN6 MGI:1914635 RGD:1311298 +HGNC:12461 UBAP1 ubiquitin associated protein 1 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 UBAP ubiquitin associated protein ESCRT-I 1116 2000-06-08 2002-08-30 2002-08-27 2015-08-24 51271 ENSG00000165006 OTTHUMG00000000430 uc003ztx.4 AF222043 XM_011517898 "CCDS6550|CCDS55303" Q9NZ09 21757351 MGI:2149543 RGD:1305186 UBAP1 609787 +HGNC:40028 UBAP1L ubiquitin associated protein 1 like protein-coding gene gene with protein product Approved 15q22.31 15q22.31 2011-08-15 2015-11-16 2015-11-16 390595 ENSG00000246922 OTTHUMG00000172425 uc002aok.4 NM_001163692 CCDS53948 F5GYI3 MGI:2685360 RGD:1582742 UBAP1L +HGNC:14185 UBAP2 ubiquitin associated protein 2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "KIAA1491|bA176F3.5|FLJ22435" 2002-09-11 2016-10-05 55833 ENSG00000137073 OTTHUMG00000000427 uc003ztq.1 AB040924 NM_018449 "CCDS6547|CCDS75828" Q5T6F2 8871400 MGI:1916176 RGD:1311717 UBAP2 +HGNC:29877 UBAP2L ubiquitin associated protein 2 like protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "NICE-4|KIAA0144" ubiquitin associated protein 2-like 2004-09-14 2015-11-11 2015-11-11 9898 ENSG00000143569 OTTHUMG00000035983 uc001fep.5 BC003170 NM_014847 "CCDS1063|CCDS44229|CCDS72925|CCDS81381" Q14157 "8590280|11230159" MGI:1921633 RGD:1308707 UBAP2L 616472 +HGNC:12462 UBASH3A ubiquitin associated and SH3 domain containing A protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "STS-2|TULA|CLIP4" T-cell ubiquitin ligand protein 2000-05-02 2010-04-28 2015-08-13 53347 ENSG00000160185 OTTHUMG00000086805 uc002zbe.4 AJ277750 NM_001001895 "CCDS13687|CCDS33566|CCDS58791" P57075 11281453 MGI:1926074 RGD:1310305 UBASH3A 605736 +HGNC:29884 UBASH3B ubiquitin associated and SH3 domain containing B protein-coding gene gene with protein product Approved 11q24.1 11q24.1 "KIAA1959|STS-1|TULA2" SH3 domain-containing 70 kDa protein, suppressor of T-cell receptor signaling 1, nm23-phosphorylated unknown substrate Protein phosphatases 703 2007-12-07 2010-04-28 2015-08-13 84959 ENSG00000154127 OTTHUMG00000166025 uc001pyi.5 AB075839 NM_032873 CCDS31694 Q8TF42 "11853319|12370296|23784775" MGI:1920078 RGD:1310357 UBASH3B 609201 +HGNC:12463 UBB ubiquitin B protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "MGC8385|FLJ25987" polyubiquitin B 1990-03-06 2016-10-05 7314 ENSG00000170315 OTTHUMG00000058987 uc002gpx.5 NM_018955 CCDS11177 P0CG47 2154095 MGI:98888 RGD:621562 UBB 191339 +HGNC:12464 UBBP1 ubiquitin B pseudogene 1 pseudogene pseudogene Approved 2q22.1 02q22.1 1990-03-12 2011-08-10 7315 ENSG00000230037 OTTHUMG00000153582 X04801 NG_002284 PGOHUM00000259767 +HGNC:12465 UBBP2 ubiquitin B pseudogene 2 pseudogene pseudogene Approved 1q41 01q41 1999-08-06 2010-11-25 23668 ENSG00000228247 OTTHUMG00000038050 X04802 NG_002287 3029682 PGOHUM00000244419 +HGNC:12466 UBBP3 ubiquitin B pseudogene 3 pseudogene pseudogene Approved 2q23.1 02q23.1 1999-08-06 2011-08-10 23667 ENSG00000223962 OTTHUMG00000153738 Y00332 NG_002286 "3035490|3029682" PGOHUM00000240380 +HGNC:12467 UBBP4 ubiquitin B pseudogene 4 pseudogene pseudogene Approved 17p11.2 17p11.2 1999-08-20 2011-08-10 23666 ENSG00000263563 OTTHUMG00000179059 X07499 NG_002285 2834222 RGD:2321712 UBBP4 +HGNC:42645 UBBP5 ubiquitin B pseudogene 5 pseudogene pseudogene Approved 13q31.2 13q31.2 2011-08-10 2011-08-10 100873783 ENSG00000228074 OTTHUMG00000017163 NG_032525 PGOHUM00000248657 +HGNC:12468 UBC ubiquitin C protein-coding gene gene with protein product Approved 12q24.3 12q24.3 polyubiquitin-C 1991-10-23 2015-08-26 7316 ENSG00000150991 OTTHUMG00000044421 uc031zre.2 NM_021009 CCDS9260 P0CG48 "1315303|11872750" MGI:98889 RGD:621244 UBC 191340 +HGNC:18795 UBD ubiquitin D protein-coding gene gene with protein product Approved 6p22.1 06p22.1 FAT10 2002-06-19 2016-10-05 10537 ENSG00000213886 OTTHUMG00000031289 uc011hhy.2 Y12653 NM_006398 CCDS4662 O15205 "9368598|8662070" MGI:1344410 RGD:69418 UBD 606050 +HGNC:18796 UBDP1 ubiquitin D pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 dJ994E9.3 2003-11-27 2016-08-22 100286971 ENSG00000225797 OTTHUMG00000031258 NG_027532 PGOHUM00000301304 +HGNC:12472 UBE2A ubiquitin conjugating enzyme E2 A protein-coding gene gene with protein product Approved Xq24 Xq24 "UBC2|HHR6A|RAD6A" "ubiquitin-conjugating enzyme E2A (RAD6 homolog)|ubiquitin-conjugating enzyme E2A" Ubiquitin conjugating enzymes E2 102 1992-12-02 2016-03-14 2016-03-14 7319 ENSG00000077721 OTTHUMG00000022275 uc004erl.5 AK223045 NM_003336 "CCDS14580|CCDS14581|CCDS78500" P49459 1559696 MGI:102959 RGD:1359534 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=UBE2A UBE2A 312180 159080 +HGNC:12473 UBE2B ubiquitin conjugating enzyme E2 B protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "UBC2|HHR6B|RAD6B" "ubiquitin-conjugating enzyme E2B (RAD6 homolog)|ubiquitin-conjugating enzyme E2B" Ubiquitin conjugating enzymes E2 102 1992-12-02 2016-03-14 2016-03-14 7320 ENSG00000119048 OTTHUMG00000129120 uc003kzh.4 M74525 NM_003337 CCDS4174 P63146 1559696 MGI:102944 RGD:708345 UBE2B 179095 +HGNC:15937 UBE2C ubiquitin conjugating enzyme E2 C protein-coding gene gene with protein product Approved 20q13.12 20q13.12 UBCH10 ubiquitin-conjugating enzyme E2C Ubiquitin conjugating enzymes E2 102 2001-07-31 2016-03-14 2016-03-14 11065 ENSG00000175063 OTTHUMG00000033038 uc002xpm.4 U73379 NM_007019 "CCDS13370|CCDS13371|CCDS13372|CCDS13374|CCDS74733|CCDS74734" O00762 9122200 MGI:1915862 RGD:1305382 UBE2C 605574 +HGNC:19670 UBE2CP1 ubiquitin conjugating enzyme E2 C pseudogene 1 pseudogene pseudogene Approved 14q12 14q12 ubiquitin-conjugating enzyme E2C pseudogene 1 2003-01-13 2016-03-14 2016-03-14 326105 ENSG00000258648 OTTHUMG00000170581 NG_002528 PGOHUM00000247755 +HGNC:43551 UBE2CP2 ubiquitin conjugating enzyme E2 C pseudogene 2 pseudogene pseudogene Approved 18q11.2 18q11.2 ubiquitin-conjugating enzyme E2C pseudogene 2 2011-11-07 2016-03-14 2016-03-14 646595 ENSG00000265939 OTTHUMG00000179444 NG_022483 PGOHUM00000234895 +HGNC:43552 UBE2CP3 ubiquitin conjugating enzyme E2 C pseudogene 3 pseudogene pseudogene Approved 4q12 04q12 ubiquitin-conjugating enzyme E2C pseudogene 3 2011-11-07 2016-03-14 2016-03-14 100129983 ENSG00000250384 OTTHUMG00000160776 NG_022057 PGOHUM00000245919 +HGNC:43553 UBE2CP4 ubiquitin conjugating enzyme E2 C pseudogene 4 pseudogene pseudogene Approved 15q13.3 15q13.3 ubiquitin-conjugating enzyme E2C pseudogene 4 2011-11-07 2016-03-14 2016-03-14 283711 ENSG00000259179 OTTHUMG00000129269 NG_023395 PGOHUM00000247067 +HGNC:43554 UBE2CP5 ubiquitin conjugating enzyme E2 C pseudogene 5 pseudogene pseudogene Approved 19q13.43 19q13.43 ubiquitin-conjugating enzyme E2C pseudogene 5 2011-11-07 2016-03-14 2016-03-14 100874260 NG_032555 PGOHUM00000250630 +HGNC:12474 UBE2D1 ubiquitin conjugating enzyme E2 D1 protein-coding gene gene with protein product Approved 10q21.1 10q21.1 "UbcH5A|UBCH5|UBC4/5|E2(17)KB1" SFT "stimulator of Fe transport|ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2D 1" Ubiquitin conjugating enzymes E2 102 1997-03-21 2016-03-14 2016-03-14 7321 ENSG00000072401 OTTHUMG00000018269 uc001jke.3 BC015997 NM_003338 "CCDS7252|CCDS73139" P51668 "10072594|8530467" MGI:2384911 RGD:1307886 UBE2D1 602961 +HGNC:12475 UBE2D2 ubiquitin conjugating enzyme E2 D2 protein-coding gene gene with protein product Approved 5q31.2 05q31.2 "UbcH5B|UBC4" "ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC4/5)|ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2D 2" Ubiquitin conjugating enzymes E2 102 1997-03-21 2016-03-14 2016-03-14 7322 ENSG00000131508 OTTHUMG00000163282 uc003ler.3 L40146 NM_181838 "CCDS43369|CCDS47275" P62837 8530467 MGI:1930715 RGD:1591897 UBE2D2 602962 +HGNC:12476 UBE2D3 ubiquitin conjugating enzyme E2 D3 protein-coding gene gene with protein product Approved 4q24 04q24 UbcH5C "ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC4/5)|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2D 3" Ubiquitin conjugating enzymes E2 102 1997-03-21 2016-03-14 2016-03-14 7323 ENSG00000109332 OTTHUMG00000131119 uc003hwi.5 U39318 NM_181893 "CCDS3659|CCDS3660|CCDS3661|CCDS75172" P61077 8530467 MGI:1913355 RGD:619912 UBE2D3 602963 +HGNC:33349 UBE2D3P1 ubiquitin conjugating enzyme E2 D3 pseudogene 1 pseudogene pseudogene Approved 20p12.3 20p12.3 RP4-680N4 "UBE2D5P|UBE2D3P" "ubiquitin-conjugating enzyme E2D 5 pseudogene|ubiquitin-conjugating enzyme E2D 3 pseudogene|ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) pseudogene 1|ubiquitin-conjugating enzyme E2D 3 pseudogene 1" 2007-02-19 2010-09-21 2016-03-14 2016-03-14 100037280 ENSG00000225022 OTTHUMG00000031799 AL121755 XM_001723611 +HGNC:39010 UBE2D3P2 ubiquitin conjugating enzyme E2 D3 pseudogene 2 pseudogene pseudogene Approved 3p22.2 03p22.2 "ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) pseudogene 2|ubiquitin-conjugating enzyme E2D 3 pseudogene 2" 2010-09-21 2016-03-14 2016-03-14 100130139 ENSG00000225558 OTTHUMG00000155909 NG_028938 PGOHUM00000237994 +HGNC:39011 UBE2D3P3 ubiquitin conjugating enzyme E2 D3 pseudogene 3 pseudogene pseudogene Approved 1q21.3 01q21.3 "ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) pseudogene 3|ubiquitin-conjugating enzyme E2D 3 pseudogene 3" 2010-09-21 2016-03-14 2016-03-14 100874262 ENSG00000224690 OTTHUMG00000035007 NG_032223 PGOHUM00000251136 +HGNC:39391 UBE2D3P4 ubiquitin conjugating enzyme E2 D3 pseudogene 4 pseudogene pseudogene Approved 13q31.1 13q31.1 "ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) pseudogene 4|ubiquitin-conjugating enzyme E2D 3 pseudogene 4" 2010-12-02 2016-03-14 2016-03-14 100131800 ENSG00000224188 OTTHUMG00000017151 NG_011460 PGOHUM00000248651 +HGNC:21647 UBE2D4 ubiquitin conjugating enzyme E2 D4 (putative) protein-coding gene gene with protein product Approved 7p13 07p13 HBUCE1 ubiquitin-conjugating enzyme E2D 4 (putative) Ubiquitin conjugating enzymes E2 102 2005-02-02 2016-03-14 2016-03-14 51619 ENSG00000078967 OTTHUMG00000128971 uc003tja.3 BC004104 NM_015983 CCDS5474 Q9Y2X8 12690205 MGI:1913774 RGD:69425 UBE2D4 +HGNC:28656 UBE2DNL ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudogene pseudogene Approved Xq21.1 Xq21.1 MGC42638 "ubiquitin-conjugating enzyme E2D N-terminal like|ubiquitin-conjugating enzyme E2D N-terminal like pseudogene|ubiquitin-conjugating enzyme E2D N-terminal like (pseudogene)" 2006-12-11 2016-03-14 2016-03-14 100131816 ENSG00000229547 OTTHUMG00000021928 BC040290 NR_024062 Q8IWF7 12477932 +HGNC:12477 UBE2E1 ubiquitin conjugating enzyme E2 E1 protein-coding gene gene with protein product Approved 3p24.2 03p24.2 UbcH6 "ubiquitin-conjugating enzyme E2E 1 (homologous to yeast UBC4/5)|ubiquitin-conjugating enzyme E2E 1 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2E 1" Ubiquitin conjugating enzymes E2 102 1997-03-21 2016-03-14 2016-03-14 7324 ENSG00000170142 OTTHUMG00000130483 uc003cch.4 X92963 NM_003341 "CCDS2638|CCDS2639|CCDS56244" P51965 8576257 MGI:107411 RGD:2324438 UBE2E1 602916 +HGNC:40598 UBE2E1-AS1 UBE2E1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p24.3 03p24.3 UBE2E1 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100874092 ENSG00000223791 OTTHUMG00000155580 uc062hmp.1 NR_046652 +HGNC:12478 UBE2E2 ubiquitin conjugating enzyme E2 E2 protein-coding gene gene with protein product Approved 3p24.3 03p24.3 "UbcH8|FLJ25157" "ubiquitin-conjugating enzyme E2E 2 (homologous to yeast UBC4/5)|ubiquitin-conjugating enzyme E2E 2 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2E 2" Ubiquitin conjugating enzymes E2 102 1997-12-15 2016-03-14 2016-10-05 7325 ENSG00000182247 OTTHUMG00000130482 uc003ccg.3 AK057886 NM_152653 CCDS2637 Q96LR5 9371400 MGI:2384997 RGD:1305644 UBE2E2 602163 +HGNC:44512 UBE2E2-AS1 UBE2E2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 3p24.3 03p24.3 2012-11-13 2012-11-13 100505877 ENSG00000233153 OTTHUMG00000155608 uc062hmd.1 NR_136177 +HGNC:12479 UBE2E3 ubiquitin conjugating enzyme E2 E3 protein-coding gene gene with protein product Approved 2q31.3 02q31.3 UbcH9 "ubiquitin-conjugating enzyme E2E 3 (homologous to yeast UBC4/5)|ubiquitin-conjugating enzyme E2E 3 (UBC4/5 homolog, yeast)|ubiquitin-conjugating enzyme E2E 3" Ubiquitin conjugating enzymes E2 102 1998-12-01 2016-03-14 2016-03-14 10477 ENSG00000170035 OTTHUMG00000132585 uc032oln.2 AB017644 NM_006357 CCDS2282 Q969T4 10343118 MGI:107412 RGD:1308894 UBE2E3 604151 +HGNC:32199 UBE2E4P ubiquitin conjugating enzyme E2 E4 pseudogene pseudogene pseudogene Approved Xp22.2 Xp22.2 UbcM2 ubiquitin-conjugating enzyme E2E 4 pseudogene Ubiquitin conjugating enzymes E2 102 2005-08-10 2016-03-14 2016-03-14 286480 AF136176 NG_004721 +HGNC:12480 UBE2F ubiquitin conjugating enzyme E2 F (putative) protein-coding gene gene with protein product Approved 2q37.3 02q37.3 NCE2 NEDD8 conjugating enzyme ubiquitin-conjugating enzyme E2F (putative) Ubiquitin conjugating enzymes E2 102 1999-03-02 2016-03-14 2016-07-29 140739 ENSG00000184182 OTTHUMG00000133341 uc002vxk.4 BC010549 NM_080678 "CCDS2523|CCDS63175|CCDS63176|CCDS63177" Q969M7 "19250909|23201271" MGI:1915171 RGD:1307608 UBE2F 6.3.2.- +HGNC:48339 UBE2F-SCLY UBE2F-SCLY readthrough (NMD candidate) other readthrough Approved 2q37.3 02q37.3 2013-05-09 2013-05-09 100533179 ENSG00000258984 OTTHUMG00000170602 NR_037904 +HGNC:44535 UBE2FP1 ubiquitin conjugating enzyme E2 F (putative) pseudogene 1 pseudogene pseudogene Approved 3p22.2 03p22.2 ubiquitin-conjugating enzyme E2F (putative) pseudogene 1 2012-11-15 2016-03-14 2016-03-14 100421436 ENSG00000224080 OTTHUMG00000155910 NG_025564 PGOHUM00000237587 +HGNC:44536 UBE2FP2 ubiquitin conjugating enzyme E2 F (putative) pseudogene 2 pseudogene pseudogene Approved 16q21 16q21 ubiquitin-conjugating enzyme E2F (putative) pseudogene 2 2012-11-15 2016-03-14 2016-03-14 101060189 ENSG00000261199 OTTHUMG00000177029 NG_033246 PGOHUM00000248909 +HGNC:44537 UBE2FP3 ubiquitin conjugating enzyme E2 F (putative) pseudogene 3 pseudogene pseudogene Approved 1p13.2 01p13.2 ubiquitin-conjugating enzyme E2F (putative) pseudogene 3 2012-11-15 2016-03-14 2016-03-14 106480360 ENSG00000233337 OTTHUMG00000011747 NG_044745 PGOHUM00000244849 +HGNC:12482 UBE2G1 ubiquitin conjugating enzyme E2 G1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 UBC7 UBE2G "ubiquitin-conjugating enzyme E2G 1 (homologous to C. elegans UBC7)|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, C. elegans)|ubiquitin-conjugating enzyme E2G 1 (UBC7 homolog, yeast)|ubiquitin-conjugating enzyme E2G 1" Ubiquitin conjugating enzymes E2 102 1996-05-15 2016-03-14 2016-03-14 7326 ENSG00000132388 OTTHUMG00000177826 uc002fxs.4 BC026288 NM_003342 CCDS32532 P62253 8893823 MGI:1914378 RGD:620392 UBE2G1 601569 +HGNC:12483 UBE2G2 ubiquitin conjugating enzyme E2 G2 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 UBC7 "ubiquitin-conjugating enzyme E2G 2 (homologous to yeast UBC7)|ubiquitin-conjugating enzyme E2G 2 (UBC7 homolog, yeast)|ubiquitin-conjugating enzyme E2G 2" Ubiquitin conjugating enzymes E2 102 1997-11-20 2016-03-14 2016-03-14 7327 ENSG00000184787 OTTHUMG00000089179 uc002zfy.4 BC008351 NM_182688 "CCDS13714|CCDS33586" P60604 "9693041|9925943" MGI:1343188 RGD:1304860 UBE2G2 603124 +HGNC:12484 UBE2H ubiquitin conjugating enzyme E2 H protein-coding gene gene with protein product Approved 7q32.2 07q32.2 "UBCH|UBC8|GID3" GID complex subunit 3, UBC8 homolog (S. cerevisiae) "ubiquitin-conjugating enzyme E2H (homologous to yeast UBC8)|ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast)|ubiquitin-conjugating enzyme E2H" Ubiquitin conjugating enzymes E2 102 1995-07-12 2016-03-14 2016-10-05 7328 ENSG00000186591 OTTHUMG00000157650 uc003vpf.3 BC006277 NM_003344 "CCDS5814|CCDS47710" P62256 8132613 MGI:104632 RGD:2319288 UBE2H 601082 6.3.2.19 +HGNC:31079 UBE2HP1 ubiquitin conjugating enzyme E2 H pseudogene 1 pseudogene pseudogene Approved 8q21.13 08q21.13 UBE2HP "ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) pseudogene|ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) pseudogene 1|ubiquitin-conjugating enzyme E2H pseudogene 1" 2004-01-26 2010-07-07 2016-03-14 2016-03-14 646463 ENSG00000253677 OTTHUMG00000164597 NG_008822 PGOHUM00000249724 +HGNC:12485 UBE2I ubiquitin conjugating enzyme E2 I protein-coding gene gene with protein product Approved 16p13.3 16p13.3 UBC9 "ubiquitin-conjugating enzyme E2I (homologous to yeast UBC9)|ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast)|ubiquitin-conjugating enzyme E2I" Ubiquitin conjugating enzymes E2 102 1995-07-11 2016-03-14 2016-03-14 7329 ENSG00000103275 OTTHUMG00000186701 uc002cld.3 D45050 NM_003345 CCDS10433 P63279 8565643 MGI:107365 RGD:3926 UBE2I 601661 6.3.2.19 +HGNC:17598 UBE2J1 ubiquitin conjugating enzyme E2 J1 protein-coding gene gene with protein product Approved 6q15 06q15 "HSPC153|CGI-76|NCUBE1|UBC6" "ubiquitin-conjugating enzyme E2, J1 (UBC6 homolog, yeast)|ubiquitin-conjugating enzyme E2, J1" Ubiquitin conjugating enzymes E2 102 2002-11-26 2016-03-14 2016-03-14 51465 ENSG00000198833 OTTHUMG00000016337 uc003pnc.4 AJ245898 NM_016021 CCDS5021 Q9Y385 10708578 MGI:1926245 RGD:1305067 UBE2J1 616175 +HGNC:19268 UBE2J2 ubiquitin conjugating enzyme E2 J2 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "Ubc6p|NCUBE2" "ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast)|ubiquitin-conjugating enzyme E2, J2" Ubiquitin conjugating enzymes E2 102 2002-11-26 2016-03-14 2016-03-14 118424 ENSG00000160087 OTTHUMG00000001911 uc001adp.4 AF296658 NM_058167 "CCDS14|CCDS15|CCDS16" Q8N2K1 11278356 MGI:2153608 RGD:1359523 UBE2J2 +HGNC:4914 UBE2K ubiquitin conjugating enzyme E2 K protein-coding gene gene with protein product Approved 4p14 04p14 "HYPG|UBC1" HIP2 "huntingtin interacting protein 2|ubiquitin-conjugating enzyme E2K (UBC1 homolog, yeast)|ubiquitin-conjugating enzyme E2K" Ubiquitin conjugating enzymes E2 102 1997-08-28 2007-12-04 2016-03-14 2016-03-14 3093 ENSG00000078140 OTTHUMG00000160543 uc003guu.5 U58522 NM_005339 "CCDS33976|CCDS47043|CCDS47044" P61086 "8702625|17873885" MGI:1858216 RGD:1311626 UBE2K 602846 +HGNC:12486 UBE2L1 ubiquitin conjugating enzyme E2 L1 (pseudogene) pseudogene pseudogene Approved 14q22.3 14q22.3 "UBEL1|L-UBC|UBCH7N3" "UBE2L7P|UBE2L7" "ubiquitin-conjugating enzyme E2L 7 pseudogene|ubiquitin-conjugating enzyme E2L 1|ubiquitin-conjugating enzyme E2L 1 pseudogene|ubiquitin-conjugating enzyme E2L 1 (pseudogene)" Ubiquitin conjugating enzymes E2 102 1997-03-21 2016-03-14 2016-03-14 283556 NG_002490 "8563171|10760570" 600012 +HGNC:12487 UBE2L2 ubiquitin conjugating enzyme E2 L2 (pseudogene) pseudogene pseudogene Approved 12p12.2 12p12.2 "ubiquitin-conjugating enzyme E2L 2|ubiquitin-conjugating enzyme E2L 2 (pseudogene)" Ubiquitin conjugating enzymes E2 102 1997-03-21 2016-03-14 2016-10-05 100506424 ENSG00000131982 OTTHUMG00000168963 NG_029060 8672131 PGOHUM00000239368 +HGNC:12488 UBE2L3 ubiquitin conjugating enzyme E2 L3 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 UBCH7 ubiquitin-conjugating enzyme E2L 3 Ubiquitin conjugating enzymes E2 102 1997-03-21 2016-03-14 2016-10-05 7332 ENSG00000185651 OTTHUMG00000150823 uc002zva.2 AJ000519 NM_198157 "CCDS13790|CCDS58795|CCDS58796" P68036 "8672131|9693040" MGI:109240 RGD:1308361 UBE2L3 603721 369255 +HGNC:12489 UBE2L4 ubiquitin conjugating enzyme E2 L4 (pseudogene) pseudogene pseudogene Approved 19p13.2 19p13.2 "ubiquitin-conjugating enzyme E2L 4|ubiquitin-conjugating enzyme E2L 4 (pseudogene)" Ubiquitin conjugating enzymes E2 102 1997-04-16 2016-03-14 2016-10-05 7333 ENSG00000267741 OTTHUMG00000180210 Y09515 NG_001209 9605847 PGOHUM00000295189 +HGNC:13477 UBE2L5P ubiquitin conjugating enzyme E2 L5, pseudogene pseudogene pseudogene Approved 13q12.3 13q12.3 UBE2L5 "ubiquitin-conjugating enzyme E2L 5, pseudogene|ubiquitin conjugating enzyme E2L 5 (pseudogene)" Ubiquitin conjugating enzymes E2 102 2005-08-10 2005-08-15 2016-03-14 2016-03-14 171222 ENSG00000236444 OTTHUMG00000016669 AL161893 NG_001319 +HGNC:12490 UBE2L6 ubiquitin conjugating enzyme E2 L6 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 UBCH8 ubiquitin-conjugating enzyme E2L 6 Ubiquitin conjugating enzymes E2 102 1999-02-26 2016-03-14 2016-03-14 9246 ENSG00000156587 OTTHUMG00000167047 uc001nkn.3 "AF031141|AK093462|BC032491" NM_004223 "CCDS7960|CCDS7961" O14933 9153201 MGI:1914500 RGD:1307960 UBE2L6 603890 +HGNC:12491 UBE2M ubiquitin conjugating enzyme E2 M protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "hUbc12|UBC12" "ubiquitin-conjugating enzyme E2M (homologous to yeast UBC12)|ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)|ubiquitin-conjugating enzyme E2M" Ubiquitin conjugating enzymes E2 102 1999-01-22 2016-03-14 2016-03-14 9040 ENSG00000130725 OTTHUMG00000183548 uc002qtl.5 AB012191 NM_003969 CCDS12987 P61081 9694792 MGI:108278 RGD:1307614 UBE2M 603173 +HGNC:32195 UBE2MP1 ubiquitin conjugating enzyme E2 M pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 ubiquitin-conjugating enzyme E2M pseudogene 1 2005-08-10 2016-03-14 2016-03-14 606551 ENSG00000261461 OTTHUMG00000176235 CR599143 NR_002837 +HGNC:12492 UBE2N ubiquitin conjugating enzyme E2 N protein-coding gene gene with protein product Approved 12q22 12q22 "UbcH-ben|UBC13|MGC8489" "ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13)|ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast)|ubiquitin-conjugating enzyme E2N" Ubiquitin conjugating enzymes E2 102 1997-04-16 2016-03-14 2016-03-14 7334 ENSG00000177889 OTTHUMG00000170156 uc001tcp.4 D83004 NM_003348 CCDS31875 P61088 8902611 MGI:1934835 RGD:621096 UBE2N 603679 2.3.2.23 +HGNC:31710 UBE2NL ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding gene gene with protein product Approved Xq27.3 Xq27.3 "ubiquitin-conjugating enzyme E2N-like|ubiquitin-conjugating enzyme E2N-like (gene/pseudogene)" Ubiquitin conjugating enzymes E2 102 2004-06-03 2016-03-14 2016-03-14 389898 ENSG00000276380 OTTHUMG00000188525 uc284rcc.1 NM_001012989 Q5JXB2 20736409 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=UBE2NL UBE2NL +HGNC:20337 UBE2NP1 ubiquitin conjugating enzyme E2 N pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 ubiquitin-conjugating enzyme E2N pseudogene 1 2003-01-24 2016-03-14 2016-03-14 100288613 ENSG00000256385 OTTHUMG00000168889 NG_031850 PGOHUM00000247738 +HGNC:29554 UBE2O ubiquitin conjugating enzyme E2 O protein-coding gene gene with protein product Approved 17q25.1 17q25.1 E2-230K ubiquitin-conjugating enzyme E2O 2005-12-15 2016-03-14 2016-03-14 63893 ENSG00000175931 OTTHUMG00000180178 uc002jrm.5 AB051521 NM_022066 CCDS32742 Q9C0C9 "11311559|11214970" MGI:2444266 RGD:1310297 UBE2O +HGNC:15698 UBE2Q1 ubiquitin conjugating enzyme E2 Q1 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "PRO3094|NICE-5" UBE2Q "ubiquitin-conjugating enzyme E2Q (putative)|ubiquitin-conjugating enzyme E2Q family member 1" Ubiquitin conjugating enzymes E2 102 2001-05-17 2005-08-05 2016-03-14 2016-10-05 55585 ENSG00000160714 OTTHUMG00000037265 uc001fff.2 AJ243666 NM_017582 CCDS1069 Q7Z7E8 MGI:1917343 RGD:1305305 UBE2Q1 +HGNC:40722 UBE2Q1-AS1 UBE2Q1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1q21.3 01q21.3 UBE2Q1 antisense RNA 1 (non-protein coding) 2011-12-05 2012-08-15 2014-11-19 100874097 ENSG00000229780 OTTHUMG00000037263 uc057lip.1 AW070285 NR_046668 +HGNC:19248 UBE2Q2 ubiquitin conjugating enzyme E2 Q2 protein-coding gene gene with protein product Approved 15q24.2 15q24.2 DKFZp762C143 "ubiquitin-conjugating enzyme E2Q (putative) 2|ubiquitin-conjugating enzyme E2Q family member 2" Ubiquitin conjugating enzymes E2 102 2005-10-04 2016-03-14 2016-03-14 92912 ENSG00000140367 OTTHUMG00000142839 uc002bbg.4 BC017708 NM_173469 "CCDS10286|CCDS45309|CCDS66839" Q8WVN8 16300736 MGI:2388672 RGD:1307680 UBE2Q2 612501 +HGNC:44656 UBE2Q2L ubiquitin conjugating enzyme E2 Q2 like protein-coding gene gene with protein product Approved 15q25.2 15q25.2 ubiquitin-conjugating enzyme E2Q family member 2-like 2014-01-03 2016-03-14 2016-03-14 100505679 ENSG00000259511 OTTHUMG00000172496 NM_001243531 CCDS58396 H0YL09 +HGNC:37439 UBE2Q2P1 ubiquitin conjugating enzyme E2 Q2 pseudogene 1 pseudogene pseudogene Approved 15q25.2 15q25.2 FLJ43276 UBE2QP1 "ubiquitin-conjugating enzyme E2Q family pseudogene 1|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 1" 2009-09-28 2009-12-17 2016-03-14 2016-03-14 388165 ENSG00000189136 OTTHUMG00000148662 NR_003661 PGOHUM00000262233 +HGNC:37440 UBE2Q2P2 ubiquitin conjugating enzyme E2 Q2 pseudogene 2 pseudogene pseudogene Approved 15q25.2 15q25.2 "UBE2QP2|UBE2Q2P3" "ubiquitin-conjugating enzyme E2Q family pseudogene 2|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 3|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 2" 2009-09-28 2009-12-17 2016-03-14 2016-03-14 100134869 ENSG00000259429 OTTHUMG00000172604 BC066934 NR_004847 PGOHUM00000262260 +HGNC:38429 UBE2Q2P4Y ubiquitin conjugating enzyme E2 Q2 pseudogene 4, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 UBE2Q2PY1 "ubiquitin-conjugating enzyme E2Q family member 2 pseudogene, Y-linked 1|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 4, Y-linked" 2010-05-12 2010-06-28 2016-03-14 2016-03-14 100421716 ENSG00000225491 OTTHUMG00000045075 NG_021926 PGOHUM00000262155 +HGNC:38466 UBE2Q2P5Y ubiquitin conjugating enzyme E2 Q2 pseudogene 5, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 UBE2Q2PY2 "ubiquitin-conjugating enzyme E2Q family member 2 pseudogene, Y-linked 2|ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 5, Y-linked" 2010-05-12 2010-06-28 2016-03-14 2016-03-14 100421717 ENSG00000223636 OTTHUMG00000045280 NG_004755 PGOHUM00000262162 +HGNC:49412 UBE2Q2P6 ubiquitin conjugating enzyme E2 Q2 pseudogene 6 pseudogene pseudogene Approved 15q25.2 15q25.2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 6 2013-11-05 2016-03-14 2016-03-14 100421769 ENSG00000275695 OTTHUMG00000187868 NG_025398 PGOHUM00000293317 +HGNC:49413 UBE2Q2P7 ubiquitin conjugating enzyme E2 Q2 pseudogene 7 pseudogene pseudogene Approved 15q25.2 alternate reference locus 15q25.2 alternate reference locus ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 7 2013-11-05 2016-03-14 2016-03-14 100421766 NG_025343 PGOHUM00000262071 +HGNC:49521 UBE2Q2P8 ubiquitin conjugating enzyme E2 Q2 pseudogene 8 pseudogene pseudogene Approved 15q25.2 15q25.2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 8 2014-01-03 2016-03-14 2016-03-14 100421771 ENSG00000259633 OTTHUMG00000172498 NG_025401 PGOHUM00000262109 +HGNC:49517 UBE2Q2P9 ubiquitin conjugating enzyme E2 Q2 pseudogene 9 pseudogene pseudogene Approved 3p13 03p13 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 9 2014-01-03 2016-03-14 2016-03-14 106480276 ENSG00000244130 OTTHUMG00000158787 NG_044074 PGOHUM00000262434 +HGNC:49518 UBE2Q2P10 ubiquitin conjugating enzyme E2 Q2 pseudogene 10 pseudogene pseudogene Approved 8q21.3 08q21.3 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 10 2014-01-03 2016-03-14 2016-03-14 101928256 ENSG00000233915 OTTHUMG00000160482 PGOHUM00000250012 +HGNC:49522 UBE2Q2P11 ubiquitin conjugating enzyme E2 Q2 pseudogene 11 pseudogene pseudogene Approved 15q25.2 15q25.2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 11 2014-01-03 2016-03-14 2016-03-14 100421767 ENSG00000259538 OTTHUMG00000185780 NG_025347 PGOHUM00000262076 +HGNC:49523 UBE2Q2P12 ubiquitin conjugating enzyme E2 Q2 pseudogene 12 pseudogene pseudogene Approved 15q25.2 15q25.2 ubiquitin-conjugating enzyme E2Q family member 2 pseudogene 12 2014-01-03 2016-03-14 2016-03-14 100421768 ENSG00000197627 OTTHUMG00000148661 NG_025348 PGOHUM00000262077 +HGNC:37269 UBE2QL1 ubiquitin conjugating enzyme E2 Q family like 1 protein-coding gene gene with protein product Approved 5p15.31 05p15.31 FLJ25076 "ubiquitin-conjugating enzyme E2Q family-like 1|ubiquitin conjugating enzyme E2Q family-like 1" 2009-09-28 2016-03-14 2016-03-14 134111 ENSG00000215218 OTTHUMG00000161683 uc003jdp.5 AK057805 NM_001145161 CCDS47189 A1L167 24000165 MGI:1924230 RGD:1598121 UBE2QL1 615832 +HGNC:19907 UBE2R2 ubiquitin conjugating enzyme E2 R2 protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "UBC3B|CDC34B|FLJ20419|MGC10481" ubiquitin-conjugating enzyme E2R 2 Ubiquitin conjugating enzymes E2 102 2002-12-16 2016-03-14 2016-10-05 54926 ENSG00000107341 OTTHUMG00000019797 uc003ztm.4 AK000426 NM_017811 CCDS6546 Q712K3 12037680 MGI:1914865 RGD:1594826 UBE2R2 612506 +HGNC:49911 UBE2R2-AS1 UBE2R2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p13.3 09p13.3 2014-03-21 2014-03-21 101929665 ENSG00000235481 OTTHUMG00000000421 HG501976 +HGNC:17895 UBE2S ubiquitin conjugating enzyme E2 S protein-coding gene gene with protein product Approved 19q13.43 19q13.43 E2-EPF "ubiquitin carrier protein|ubiquitin-conjugating enzyme E2-24 kD|ubiquitin-protein ligase" ubiquitin-conjugating enzyme E2S Ubiquitin conjugating enzymes E2 102 2004-01-12 2016-03-14 2016-03-14 27338 ENSG00000108106 OTTHUMG00000180811 uc002qkx.2 BC004236 NM_014501 CCDS33114 Q16763 1379239 MGI:1925141 RGD:1564746 UBE2S 610309 +HGNC:30864 UBE2SP1 ubiquitin conjugating enzyme E2 S pseudogene 1 pseudogene pseudogene Approved 17p12 17p12 ubiquitin-conjugating enzyme E2S pseudogene 1 2005-08-10 2016-03-14 2016-10-05 246719 ENSG00000233966 OTTHUMG00000059073 NG_001583 +HGNC:32196 UBE2SP2 ubiquitin conjugating enzyme E2 S pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 ubiquitin-conjugating enzyme E2S pseudogene 2 2005-08-10 2016-03-14 2016-03-14 440406 ENSG00000224126 OTTHUMG00000059055 NG_031882 UBE2SP2 +HGNC:25009 UBE2T ubiquitin conjugating enzyme E2 T protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "HSPC150|FANCT" ubiquitin-conjugating enzyme E2T "Ubiquitin conjugating enzymes E2|Fanconi anemia complementation groups" "102|548" 2005-03-21 2016-03-14 2016-03-14 29089 ENSG00000077152 OTTHUMG00000041392 uc001gxx.5 AF161499 NM_014176 CCDS1425 Q9NPD8 "11042152|16916645|26046368" MGI:1914446 RGD:1310816 UBE2T 610538 432157 +HGNC:28559 UBE2U ubiquitin conjugating enzyme E2 U (putative) protein-coding gene gene with protein product Approved 1p31.3 01p31.3 MGC35130 ubiquitin-conjugating enzyme E2U (putative) Ubiquitin conjugating enzymes E2 102 2005-03-21 2016-03-14 2016-03-14 148581 ENSG00000177414 OTTHUMG00000009023 uc001dbn.1 BC029895 NM_152489 CCDS627 Q5VVX9 12477932 MGI:3588216 RGD:1565480 UBE2U +HGNC:12494 UBE2V1 ubiquitin conjugating enzyme E2 V1 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "UEV-1|CROC-1|UEV1A|CROC1" UBE2V ubiquitin-conjugating enzyme E2 variant 1 Ubiquitin conjugating enzymes E2 102 1998-03-20 2016-03-14 2016-10-05 7335 ENSG00000244687 OTTHUMG00000152626 uc002xva.5 U39360 NM_021988 "CCDS13426|CCDS13427|CCDS33483|CCDS58775|CCDS74740" Q13404 "9418904|9305758" MGI:1913839 RGD:1305503 UBE2V1 602995 +HGNC:16581 UBE2V1P1 ubiquitin conjugating enzyme E2 V1 pseudogene 1 pseudogene pseudogene Approved 20p13 20p13 dJ687F11.3 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 1 2001-09-17 2016-03-14 2016-07-22 170556 ENSG00000226632 OTTHUMG00000031743 AL117334 NG_001061 PGOHUM00000296883 +HGNC:32648 UBE2V1P2 ubiquitin conjugating enzyme E2 V1 pseudogene 2 pseudogene pseudogene Approved 3q26.31 03q26.31 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 2 2008-08-07 2016-03-14 2016-03-14 730052 ENSG00000214192 OTTHUMG00000157118 NG_008616 +HGNC:23983 UBE2V1P3 ubiquitin conjugating enzyme E2 V1 pseudogene 3 pseudogene pseudogene Approved Yp11.2 Yp11.2 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 3 2009-12-17 2016-03-14 2016-03-14 359798 ENSG00000229518 OTTHUMG00000036182 NG_002821 12815422 PGOHUM00000233669 +HGNC:44886 UBE2V1P4 ubiquitin conjugating enzyme E2 V1 pseudogene 4 pseudogene pseudogene Approved 9q34.11 09q34.11 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 4 2012-12-11 2016-03-14 2016-03-14 102724816 ENSG00000233909 OTTHUMG00000020792 NG_046388 PGOHUM00000236777 +HGNC:44888 UBE2V1P5 ubiquitin conjugating enzyme E2 V1 pseudogene 5 pseudogene pseudogene Approved 10q25.3 10q25.3 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 5 2012-12-11 2016-03-14 2016-03-14 100287173 ENSG00000226582 OTTHUMG00000019080 NG_030120 PGOHUM00000238926 +HGNC:44889 UBE2V1P6 ubiquitin conjugating enzyme E2 V1 pseudogene 6 pseudogene pseudogene Approved 2q31.1 02q31.1 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 6 2012-12-11 2016-03-14 2016-03-14 100287279 ENSG00000235995 OTTHUMG00000153958 NG_030150 PGOHUM00000241010 +HGNC:44890 UBE2V1P7 ubiquitin conjugating enzyme E2 V1 pseudogene 7 pseudogene pseudogene Approved Xq21.1 Xq21.1 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 7 2012-12-11 2016-03-14 2016-03-14 106481746 ENSG00000235061 OTTHUMG00000021891 NG_043589 PGOHUM00000241409 +HGNC:44893 UBE2V1P8 ubiquitin conjugating enzyme E2 V1 pseudogene 8 pseudogene pseudogene Approved 1p34.2 01p34.2 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 8 2012-12-11 2016-03-14 2016-03-14 102724706 ENSG00000233118 OTTHUMG00000005718 NG_046615 PGOHUM00000243981 +HGNC:44894 UBE2V1P9 ubiquitin conjugating enzyme E2 V1 pseudogene 9 pseudogene pseudogene Approved Xq21.31 Xq21.31 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 9 2012-12-11 2016-03-14 2016-03-14 100131981 ENSG00000229667 OTTHUMG00000021957 NG_030278 PGOHUM00000257258 +HGNC:44895 UBE2V1P10 ubiquitin conjugating enzyme E2 V1 pseudogene 10 pseudogene pseudogene Approved 9q21.33 09q21.33 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 10 2012-12-11 2016-03-14 2016-03-14 102724605 ENSG00000226590 OTTHUMG00000020121 NG_044944 PGOHUM00000236667 +HGNC:44896 UBE2V1P11 ubiquitin conjugating enzyme E2 V1 pseudogene 11 pseudogene pseudogene Approved 2q33.1 02q33.1 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 11 2012-12-11 2016-03-14 2016-03-14 102723977 ENSG00000231124 OTTHUMG00000154567 NG_046614 PGOHUM00000241071 +HGNC:44897 UBE2V1P12 ubiquitin conjugating enzyme E2 V1 pseudogene 12 pseudogene pseudogene Approved 5p14.3 05p14.3 ubiquitin-conjugating enzyme E2 variant 1 pseudogene 12 2012-12-11 2016-03-14 2016-03-14 106479048 ENSG00000249191 OTTHUMG00000161782 NG_044482 PGOHUM00000257101 +HGNC:12495 UBE2V2 ubiquitin conjugating enzyme E2 V2 protein-coding gene gene with protein product Approved 8q11.21 08q11.21 "UEV-2|DDVit-1|EDPF-1|MMS2" ubiquitin-conjugating enzyme E2 variant 2 Ubiquitin conjugating enzymes E2 102 1998-08-25 2016-03-14 2016-03-14 7336 ENSG00000169139 OTTHUMG00000164206 uc003xqm.4 X98091 NM_003350 CCDS43738 Q15819 "9418904|9199207" MGI:1917870 RGD:727838 UBE2V2 603001 +HGNC:44885 UBE2V2P1 ubiquitin conjugating enzyme E2 V2 pseudogene 1 pseudogene pseudogene Approved 10p12.31 10p12.31 ubiquitin-conjugating enzyme E2 variant 2 pseudogene 1 2012-12-11 2016-03-14 2016-03-14 100128493 ENSG00000226255 OTTHUMG00000017771 NG_022163 PGOHUM00000238682 +HGNC:44887 UBE2V2P2 ubiquitin conjugating enzyme E2 V2 pseudogene 2 pseudogene pseudogene Approved 17q25.3 17q25.3 ubiquitin-conjugating enzyme E2 variant 2 pseudogene 2 2012-12-11 2016-03-14 2016-03-14 104548970 ENSG00000267463 OTTHUMG00000177677 NG_041787 PGOHUM00000294225 +HGNC:44891 UBE2V2P3 ubiquitin conjugating enzyme E2 V2 pseudogene 3 pseudogene pseudogene Approved 1p36.22 01p36.22 ubiquitin-conjugating enzyme E2 variant 2 pseudogene 3 2012-12-11 2016-03-14 2016-03-14 100421341 ENSG00000238199 OTTHUMG00000002077 NG_026910 PGOHUM00000243890 +HGNC:44892 UBE2V2P4 ubiquitin conjugating enzyme E2 V2 pseudogene 4 pseudogene pseudogene Approved 1p34.3 01p34.3 ubiquitin-conjugating enzyme E2 variant 2 pseudogene 4 2012-12-11 2016-03-14 2016-03-14 106480802 ENSG00000231849 OTTHUMG00000007715 NG_044185 PGOHUM00000243969 +HGNC:25616 UBE2W ubiquitin conjugating enzyme E2 W (putative) protein-coding gene gene with protein product Approved 8q21.11 08q21.11 FLJ11011 ubiquitin-conjugating enzyme E2W (putative) Ubiquitin conjugating enzymes E2 102 2005-10-06 2016-03-14 2016-04-25 55284 ENSG00000104343 OTTHUMG00000164517 uc064nta.1 AK001873 NM_001001481 "CCDS47874|CCDS47875" Q96B02 12477932 MGI:1914049 RGD:6503620 UBE2W 614277 +HGNC:32198 UBE2WP1 ubiquitin conjugating enzyme E2 W pseudogene 1 pseudogene pseudogene Approved 1p21.3 01p21.3 UBE2WP "ubiquitin-conjugating enzyme E2W pseudogene|ubiquitin-conjugating enzyme E2W pseudogene 1" 2005-10-06 2010-07-07 2016-03-14 2016-03-14 619457 ENSG00000234422 OTTHUMG00000010709 AC092393 NG_028833 +HGNC:25847 UBE2Z ubiquitin conjugating enzyme E2 Z protein-coding gene gene with protein product Approved 17q21.32 17q21.32 "FLJ13855|USE1" UBA6-specific enzyme E2 ubiquitin-conjugating enzyme E2Z Ubiquitin conjugating enzymes E2 102 2005-12-15 2016-03-14 2016-03-14 65264 ENSG00000159202 OTTHUMG00000150521 uc002ioi.4 BC015890 NM_023079 CCDS11540 Q9H832 17597759 MGI:1343160 RGD:1308347 UBE2Z 611362 +HGNC:12496 UBE3A ubiquitin protein ligase E3A protein-coding gene gene with protein product Approved 15q11.2 15q11.2 "AS|ANCR|E6-AP|FLJ26981" Angelman syndrome "EPVE6AP|HPVE6A" human papilloma virus E6-associated protein 1993-10-21 2008-07-31 2016-10-12 7337 ENSG00000114062 OTTHUMG00000171548 uc059gvn.1 AF002224 NM_000462 "CCDS32177|CCDS45191|CCDS45192" Q05086 8221889 MGI:105098 RGD:1306361 "NGRL, Manchester LOVD|http://ngrl.manchester.ac.uk/LOVDv.2.0/home.php?select_db=UBE3A|LRG_15|http://www.lrg-sequence.org/LRG/LRG_15" UBE3A 601623 120365 6.3.2.19 +HGNC:12497 UBE3AP1 ubiquitin protein ligase E3A pseudogene 1 pseudogene pseudogene Approved 2q11.1 02q11.1 1997-06-20 2012-02-29 7338 AF010598 NG_002381 9465301 +HGNC:12498 UBE3AP2 ubiquitin protein ligase E3A pseudogene 2 pseudogene pseudogene Approved 21q22.11 21q22.11 1997-06-20 2016-10-05 7339 ENSG00000228941 OTTHUMG00000084863 AF010599 NG_001210 9465301 PGOHUM00000239064 +HGNC:13478 UBE3B ubiquitin protein ligase E3B protein-coding gene gene with protein product Approved 12q24.11 12q24.11 2004-03-02 2016-10-05 89910 ENSG00000151148 OTTHUMG00000169254 uc001toq.5 BC032301 NM_183415 "CCDS9129|CCDS58277" Q7Z3V4 MGI:1891295 RGD:1583074 UBE3B 608047 331716 +HGNC:16803 UBE3C ubiquitin protein ligase E3C protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "KIAA0010|KIAA10" 2004-05-04 2014-11-19 9690 ENSG00000009335 OTTHUMG00000157239 uc010lqs.4 AK127280 NM_014671 CCDS34789 Q15386 "7584026|11278995" MGI:2140998 RGD:1559986 UBE3C 614454 +HGNC:21381 UBE3D ubiquitin protein ligase E3D protein-coding gene gene with protein product Approved 6q14.1 06q14.1 "DKFZp434A1520|H10BH|YJR141W" UBCH10 binding protein with a hect-like domain "C6orf157|UBE2CBP" "chromosome 6 open reading frame 157|ubiquitin-conjugating enzyme E2C binding protein" 2003-06-11 2012-02-24 2012-02-24 2016-10-05 90025 ENSG00000118420 OTTHUMG00000015108 uc003pjp.4 AL137544 NM_198920 CCDS34491 Q7Z6J8 15749827 MGI:1917598 RGD:1306773 612495 +HGNC:12499 UBE4A ubiquitination factor E4A protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "UBOX2|UFD2|KIAA0126|E4" "ubiquitination factor E4A (homologous to yeast UFD2)|ubiquitination factor E4A (UFD2 homolog, yeast)" U-box domain containing 365 2000-01-28 2011-05-19 2014-11-18 9354 ENSG00000110344 OTTHUMG00000168100 uc001psv.4 D50916 NM_004788 "CCDS8396|CCDS55790" Q14139 10089879 MGI:2154580 RGD:1303173 UBE4A 603753 +HGNC:12500 UBE4B ubiquitination factor E4B protein-coding gene gene with protein product Approved 1p36.22 01p36.22 "UBOX3|E4|UFD2|KIAA0684" "ubiquitination factor E4B (homologous to yeast UFD2)|ubiquitination factor E4B (UFD2 homolog, yeast)" U-box domain containing 365 2000-01-28 2011-05-19 2016-10-05 10277 ENSG00000130939 OTTHUMG00000001797 uc001aqr.5 AF091093 NM_006048 "CCDS110|CCDS41245" O95155 "9734811|10089879" MGI:1927086 RGD:1304738 UBE4B 613565 +HGNC:30565 UBFD1 ubiquitin family domain containing 1 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "FLJ42145|FLJ38870|UBPH" ubiquitin-binding protein homolog 2007-03-02 2016-10-05 56061 ENSG00000103353 OTTHUMG00000128855 uc002dlv.4 AK124139 NM_019116 CCDS10613 O14562 10493829 MGI:107301 RGD:1306614 UBFD1 +HGNC:42389 UBFD1P1 ubiquitin family domain containing 1 pseudogene 1 pseudogene pseudogene Approved 3q11.2 03q11.2 2011-07-05 2014-11-19 100130484 ENSG00000244653 OTTHUMG00000159797 NG_022258 PGOHUM00000238111 +HGNC:30791 UBIAD1 UbiA prenyltransferase domain containing 1 protein-coding gene gene with protein product Approved 1p36.22 01p36.22 TERE1 transitional epithelia response protein SCCD Schnyder crystalline corneal dystrophy 2005-07-26 2014-11-19 29914 ENSG00000120942 OTTHUMG00000002075 uc001asg.4 NM_013319 "CCDS129|CCDS81260" Q9Y5Z9 "20953171|12497587|11314041|17668063|17962451|8894705" MGI:1918957 RGD:1309588 UBIAD1 611632 159547 +HGNC:12504 UBL3 ubiquitin like 3 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "HCG-1|DKFZP434K151|FLJ32018" PNSC1 ubiquitin-like 3 1998-01-30 2015-12-01 2016-10-05 5412 ENSG00000122042 OTTHUMG00000016661 uc001usp.4 AF044221 NM_007106 CCDS9334 O95164 10375635 MGI:1344373 RGD:1305431 UBL3 604711 +HGNC:12505 UBL4A ubiquitin like 4A protein-coding gene gene with protein product Approved Xq28 Xq28 "GDX|DXS254E|GET5|MDY2|TMA24" UBL4 "ubiquitin-like 4|ubiquitin-like 4A" 2000-02-21 2005-09-27 2015-12-01 2015-12-01 8266 ENSG00000102178 OTTHUMG00000013370 uc004flo.4 J03589 NM_014235 CCDS14754 P11441 "2829204|16872915" MGI:95049 RGD:1563983 UBL4A 312070 +HGNC:32309 UBL4B ubiquitin like 4B protein-coding gene gene with protein product Approved 1p13.3 01p13.3 FLJ25690 ubiquitin-like 4B 2005-09-27 2015-12-01 2015-12-01 164153 ENSG00000186150 OTTHUMG00000166989 uc001dzc.4 NM_203412 CCDS820 Q8N7F7 16872915 MGI:1914841 RGD:1589125 UBL4B 611127 +HGNC:13736 UBL5 ubiquitin like 5 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 ubiquitin-like 5 2000-10-24 2015-12-01 2015-12-01 59286 ENSG00000198258 OTTHUMG00000180214 uc002mmj.2 NM_024292 CCDS12219 Q9BZL1 MGI:1913427 RGD:1564644 UBL5 606849 +HGNC:44639 UBL5P1 ubiquitin like 5 pseudogene 1 pseudogene pseudogene Approved 5p13.3 05p13.3 ubiquitin-like 5 pseudogene 1 2012-11-23 2015-12-01 2015-12-01 100130803 ENSG00000248418 OTTHUMG00000161938 NG_027666 PGOHUM00000235540 +HGNC:44640 UBL5P2 ubiquitin like 5 pseudogene 2 pseudogene pseudogene Approved 17q11.2 17q11.2 ubiquitin-like 5 pseudogene 2 2012-11-23 2015-12-01 2015-12-01 100287215 ENSG00000266282 OTTHUMG00000179584 NG_027668 PGOHUM00000237026 +HGNC:44641 UBL5P3 ubiquitin like 5 pseudogene 3 pseudogene pseudogene Approved 3p14.2 03p14.2 ubiquitin-like 5 pseudogene 3 2012-11-23 2015-12-01 2015-12-01 100129031 ENSG00000240359 OTTHUMG00000158703 NG_027667 PGOHUM00000237642 +HGNC:44642 UBL5P4 ubiquitin like 5 pseudogene 4 pseudogene pseudogene Approved 16p13.13 16p13.13 ubiquitin-like 5 pseudogene 4 2012-11-23 2015-12-01 2015-12-01 106480800 ENSG00000260224 OTTHUMG00000172960 NG_044167 PGOHUM00000248725 +HGNC:28221 UBL7 ubiquitin like 7 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "BMSC-UbP|MGC14421" "bone marrow stromal cell-derived ubiquitin-like| ubiquitin-like protein SB132" "ubiquitin-like 7 (bone marrow stromal cell-derived)|ubiquitin-like 7" 2005-04-20 2015-12-01 2016-10-05 84993 ENSG00000138629 OTTHUMG00000139001 uc002axy.2 BC007913 "NM_032907|NM_201265" CCDS10263 Q96S82 12644319 MGI:1916709 RGD:1303055 UBL7 609748 +HGNC:48614 UBL7-AS1 UBL7 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 15q24.1 15q24.1 2013-05-24 2013-05-24 2013-05-24 440288 ENSG00000247240 OTTHUMG00000172644 NR_038448 +HGNC:28110 UBLCP1 ubiquitin like domain containing CTD phosphatase 1 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 "MGC10067|CPUB1" CTD phosphatase-like with ubiquitin domain 1 ubiquitin-like domain containing CTD phosphatase 1 CTD family phosphatases 1041 2005-07-20 2015-12-01 2015-12-01 134510 ENSG00000164332 OTTHUMG00000130305 uc003lxq.2 AK057996 NM_145049 CCDS4345 Q8WVY7 15883030 MGI:1933105 RGD:1310386 UBLCP1 609867 3.1.3.16 +HGNC:12506 UBN1 ubinuclein 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Protein phosphatase 1 regulatory subunits 694 2000-02-25 2015-08-24 29855 ENSG00000118900 OTTHUMG00000129531 uc002cyb.5 AF108460 NM_016936 "CCDS10525|CCDS73822" Q9NPG3 10725330 MGI:1891307 RGD:1311582 UBN1 609771 +HGNC:21931 UBN2 ubinuclein 2 protein-coding gene gene with protein product Approved 7q34 07q34 "FLJ25778|KIAA2030" 2008-12-08 2016-04-25 254048 ENSG00000157741 OTTHUMG00000157623 uc011kqr.2 AK098644 NM_173569 CCDS43655 Q6ZU65 19029251 MGI:2444236 RGD:1310722 UBN2 613841 +HGNC:17777 UBOX5 U-box domain containing 5 protein-coding gene gene with protein product Approved 20p13 20p13 "UIP5|KIAA0860|Ubce7ip5|RNF37" "Ring finger proteins|U-box domain containing" "58|365" 2005-01-10 2014-11-19 22888 ENSG00000185019 OTTHUMG00000031731 uc002whw.5 AB020667 NM_014948 "CCDS13046|CCDS13047" O94941 11274149 MGI:2154658 RGD:1305440 UBOX5 +HGNC:44111 UBOX5-AS1 UBOX5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p13 20p13 UBOX5 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 100134015 ENSG00000235958 OTTHUMG00000031730 uc002whv.2 AK097516 NR_038395 +HGNC:12507 UBP1 upstream binding protein 1 (LBP-1a) protein-coding gene gene with protein product Approved 3p22.3 03p22.3 LBP-1a 1996-05-13 2015-08-24 7342 ENSG00000153560 OTTHUMG00000130749 uc003cfq.5 AF198487 NM_014517 "CCDS2659|CCDS46788" Q9NZI7 8114710 MGI:104889 RGD:1564700 UBP1 609784 +HGNC:12508 UBQLN1 ubiquilin 1 protein-coding gene gene with protein product Approved 9q21.32 09q21.32 "DSK2|PLIC-1|XDRP1|DA41" Ubiquilin family 783 2000-02-18 2016-10-05 29979 ENSG00000135018 OTTHUMG00000020104 uc004amv.4 AF176069 NM_013438 "CCDS6663|CCDS6664" Q9UMX0 "9303440|10807547" MGI:1860276 RGD:620745 UBQLN1 605046 +HGNC:21633 UBQLN1P1 ubiquilin 1 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 UBQLN1P ubiquilin 1 pseudogene 2003-11-27 2010-07-07 2010-07-07 2014-11-19 387117 ENSG00000236405 OTTHUMG00000031134 NG_011407 PGOHUM00000243136 +HGNC:12509 UBQLN2 ubiquilin 2 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 "Chap1|Dsk2|RIHFB2157|LIC-2|CHAP1/DSK2|PLIC-2|N4BP4|PLIC2" NEDD4 binding protein 4 Ubiquilin family 783 2000-02-18 2016-10-12 29978 ENSG00000188021 OTTHUMG00000021669 uc004dus.4 AF189009 NM_013444 CCDS14374 Q9UHD9 10675567 MGI:1860283 RGD:1563566 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=UBQLN2|LRG_665|http://www.lrg-sequence.org/LRG/LRG_665" UBQLN2 300264 281347 +HGNC:12510 UBQLN3 ubiquilin 3 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 TUP-1 Ubiquilin family 783 2000-03-29 2016-10-05 50613 ENSG00000175520 OTTHUMG00000066886 uc001may.2 AF230481 NM_017481 CCDS7758 Q9H347 10831842 MGI:3045291 RGD:1304920 UBQLN3 605473 +HGNC:1237 UBQLN4 ubiquilin 4 protein-coding gene gene with protein product Approved 1q22 01q22 "A1U|UBIN" ataxin-1 ubiquitin-like interacting protein C1orf6 chromosome 1 open reading frame 6 Ubiquilin family 783 1999-01-11 2004-11-06 2004-11-05 2016-10-05 56893 ENSG00000160803 OTTHUMG00000017461 uc001fna.4 BC018403 NM_020131 CCDS1127 Q9NRR5 "10575211|11001934" MGI:2150152 RGD:1308273 UBQLN4 605440 +HGNC:31133 UBQLN4P1 ubiquilin 4 pseudogene 1 pseudogene pseudogene Approved 3q24 03q24 C3orf12 UBQLN4P ubiquilin 4 pseudogene 2004-11-05 2010-07-07 2010-07-07 2010-07-07 285329 ENSG00000241627 OTTHUMG00000159532 XM_209569 NG_005662 +HGNC:38662 UBQLN4P2 ubiquilin 4 pseudogene 2 pseudogene pseudogene Approved 2q23.3 02q23.3 2010-07-07 2014-11-19 100131393 ENSG00000226213 OTTHUMG00000154034 NG_028784 PGOHUM00000240987 +HGNC:28294 UBQLNL ubiquilin-like protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "MGC20470|MGC26958" Ubiquilin family 783 2006-11-06 2014-11-19 143630 ENSG00000175518 OTTHUMG00000066903 uc001maz.5 AK127987 NM_145053 CCDS31385 Q8IYU4 MGI:2685336 RGD:1307202 UBQLNL +HGNC:16808 UBR1 ubiquitin protein ligase E3 component n-recognin 1 protein-coding gene gene with protein product Approved 15q15.2 15q15.2 Ubiquitin protein ligase E3 component n-recognins 785 2002-01-25 2016-10-05 197131 ENSG00000159459 OTTHUMG00000130702 uc001zqq.4 NM_174916 CCDS10091 Q8IWV7 9653112 MGI:1277977 RGD:1562326 UBR1 605981 120373 +HGNC:21289 UBR2 ubiquitin protein ligase E3 component n-recognin 2 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "bA49A4.1|dJ392M17.3|KIAA0349" C6orf133 chromosome 6 open reading frame 133 Ubiquitin protein ligase E3 component n-recognins 785 2003-11-26 2005-01-12 2005-01-10 2014-11-18 23304 ENSG00000024048 OTTHUMG00000014703 uc011dur.3 BC024217 NM_015255 "CCDS4870|CCDS55001" Q8IWV8 MGI:1861099 RGD:1593237 UBR2 609134 +HGNC:30467 UBR3 ubiquitin protein ligase E3 component n-recognin 3 (putative) protein-coding gene gene with protein product Approved 2q31.1 02q31.1 "KIAA2024|DKFZp434P117|FLJ37422" ZNF650 zinc finger protein 650 Ubiquitin protein ligase E3 component n-recognins 785 2004-12-13 2007-11-29 2008-06-23 2015-03-03 130507 ENSG00000144357 OTTHUMG00000132229 uc061pjp.1 AL834144 NM_172070 CCDS2238 Q6ZT12 17462990 MGI:1861100 RGD:1565257 UBR3 613831 +HGNC:30313 UBR4 ubiquitin protein ligase E3 component n-recognin 4 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "KIAA1307|KIAA0462|RBAF600" ZUBR1 zinc finger, UBR1 type 1 Ubiquitin protein ligase E3 component n-recognins 785 2004-11-05 2007-06-19 2007-06-19 2015-08-24 23352 ENSG00000127481 OTTHUMG00000002498 uc001bbi.4 AF348492 NM_020765 CCDS189 Q5T4S7 "14702039|10718198|16055722" MGI:1916366 RGD:1563121 UBR4 609890 +HGNC:16806 UBR5 ubiquitin protein ligase E3 component n-recognin 5 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "DD5|HYD|EDD|KIAA0896" EDD1 E3 ubiquitin protein ligase, HECT domain containing, 1 Ubiquitin protein ligase E3 component n-recognins 785 2005-07-08 2007-06-19 2007-06-19 2016-10-05 51366 ENSG00000104517 OTTHUMG00000164755 uc003ykr.3 AF006010 NM_015902 "CCDS34933|CCDS64946" O95071 "10030672|16055722" MGI:1918040 RGD:621236 UBR5 608413 +HGNC:51661 UBR5-AS1 UBR5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q22.3 08q22.3 2015-04-24 2015-04-24 101927221 ENSG00000246263 OTTHUMG00000164878 NR_125415 +HGNC:20344 UBR7 ubiquitin protein ligase E3 component n-recognin 7 (putative) protein-coding gene gene with protein product Approved 14q32.12 14q32.12 C14orf130 chromosome 14 open reading frame 130 Ubiquitin protein ligase E3 component n-recognins 785 2003-01-28 2008-06-23 2008-06-23 2014-11-19 55148 ENSG00000012963 OTTHUMG00000171268 uc001ybm.4 AK001345 NM_175748 CCDS9909 Q8N806 18162545 MGI:1913872 RGD:1359144 UBR7 613816 +HGNC:25683 UBTD1 ubiquitin domain containing 1 protein-coding gene gene with protein product Approved 10q24.1-q24.2 10q24.1-q24.2 FLJ11807 2004-05-27 2016-10-11 80019 ENSG00000165886 OTTHUMG00000018856 uc001knv.2 BC007331 NM_024954 CCDS7465 Q9HAC8 12477932 MGI:2385092 RGD:1308172 UBTD1 616388 +HGNC:24463 UBTD2 ubiquitin domain containing 2 protein-coding gene gene with protein product Approved 5q35.1 05q35.1 "DC-UbP|MGC30022" dendritic cell derived ubiquitin like protein 2006-11-06 2014-11-19 92181 ENSG00000168246 OTTHUMG00000130519 uc003mbp.2 AF251700 NM_152277 CCDS4379 Q8WUN7 12507522 MGI:2444752 RGD:1305506 UBTD2 610174 +HGNC:12511 UBTF upstream binding transcription factor, RNA polymerase I protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "UBF|NOR-90|UBF1|UBF2" 1993-11-25 2015-08-24 7343 ENSG00000108312 OTTHUMG00000167585 uc010czt.3 BC042297 NM_014233 "CCDS11480|CCDS42346" P17480 9126496 MGI:98512 RGD:3927 UBTF 600673 +HGNC:14533 UBTFL1 upstream binding transcription factor, RNA polymerase I-like 1 protein-coding gene gene with protein product Approved 11q14.3 11q14.3 C11orf27 chromosome 11 open reading frame 27 2001-02-28 2008-11-20 2008-11-20 2014-11-19 642623 ENSG00000255009 OTTHUMG00000155291 uc010rub.2 NM_001143975 CCDS44704 P0CB47 19915186 MGI:3588290 613696 PGOHUM00000257917 +HGNC:35169 UBTFL2 upstream binding transcription factor, RNA polymerase I-like 2 (pseudogene) pseudogene pseudogene Approved 11q14.3 11q14.3 upstream binding transcription factor, RNA polymerase I-like 2 2008-11-20 2011-04-15 2011-04-15 120126 ENSG00000234376 OTTHUMG00000167627 NG_012230 19915186 PGOHUM00000257847 +HGNC:35402 UBTFL3 upstream binding transcription factor, RNA polymerase I-like 3 (pseudogene) pseudogene pseudogene Approved 2q11.1 02q11.1 upstream binding transcription factor, RNA polymerase I-like 3 2008-11-20 2011-04-15 2014-11-19 129870 ENSG00000204699 OTTHUMG00000155161 NG_023214 PGOHUM00000258145 +HGNC:44475 UBTFL4 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-11-05 +HGNC:35405 UBTFL5 upstream binding transcription factor, RNA polymerase I-like 5 (pseudogene) pseudogene pseudogene Approved 2q11.1 02q11.1 upstream binding transcription factor, RNA polymerase I-like 5 2008-11-20 2011-04-15 2014-11-18 728231 ENSG00000204705 OTTHUMG00000155173 NG_023413 PGOHUM00000258129 +HGNC:35406 UBTFL6 upstream binding transcription factor, RNA polymerase I-like 6 (pseudogene) pseudogene pseudogene Approved 2q11.2 02q11.2 upstream binding transcription factor, RNA polymerase I-like 6 2008-11-20 2011-04-15 2014-11-19 643615 ENSG00000228970 OTTHUMG00000153012 NG_027836 P0CB48 PGOHUM00000258134 +HGNC:35404 UBTFL7 upstream binding transcription factor, RNA polymerase I-like 7 (pseudogene) pseudogene pseudogene Approved 11p11.12 11p11.12 upstream binding transcription factor, RNA polymerase I-like 7 2008-11-20 2011-04-15 2011-04-15 646759 ENSG00000229361 OTTHUMG00000165234 NG_006986 PGOHUM00000257875 +HGNC:44476 UBTFL8 upstream binding transcription factor, RNA polymerase I-like 8 (pseudogene) pseudogene pseudogene Approved 3p26.1 03p26.1 2012-11-05 2012-11-05 643182 ENSG00000224082 OTTHUMG00000155239 NG_008907 PGOHUM00000237525 +HGNC:50286 UBTFL9 upstream binding transcription factor, RNA polymerase I-like 9 (pseudogene) pseudogene pseudogene Approved 11p11.12 11p11.12 2014-03-31 2014-03-31 100128427 ENSG00000254567 OTTHUMG00000166642 NG_008910 PGOHUM00000257814 +HGNC:50287 UBTFL10 upstream binding transcription factor, RNA polymerase I-like 10 (pseudogene) pseudogene pseudogene Approved 11q14.3 11q14.3 2014-03-31 2014-03-31 106480293 ENSG00000255385 OTTHUMG00000167622 NG_044200 PGOHUM00000257901 +HGNC:50288 UBTFL11 upstream binding transcription factor, RNA polymerase I-like 11 (pseudogene) pseudogene pseudogene Approved Xp11.4 Xp11.4 2014-03-31 2014-03-31 2014-03-31 442446 ENSG00000233007 OTTHUMG00000024088 NG_008905 PGOHUM00000241239 +HGNC:18402 UBXN1 UBX domain protein 1 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 "LOC51035|2B28|UBXD10|SAKS1" SAPK substrate protein 1 UBX domain containing 364 2008-07-25 2008-07-25 2016-10-05 51035 ENSG00000162191 OTTHUMG00000167580 uc001nul.4 NM_015853 "CCDS8029|CCDS66105|CCDS73307" Q04323 "12838346|20351172" MGI:1289301 RGD:1309471 UBXN1 616378 +HGNC:27265 UBXN2A UBX domain protein 2A protein-coding gene gene with protein product Approved 2p23.3 02p23.3 UBXD4 UBX domain containing 4 UBX domain containing 364 2004-01-09 2008-07-25 2008-07-25 2016-10-05 165324 ENSG00000173960 OTTHUMG00000125497 uc010exy.4 BC037901 NM_181713 CCDS1704 P68543 12477932 MGI:2442310 RGD:1589027 UBXN2A +HGNC:27035 UBXN2B UBX domain protein 2B protein-coding gene gene with protein product Approved 8q12.1 08q12.1 p37 UBX domain containing 364 2008-07-25 2014-11-19 137886 ENSG00000215114 OTTHUMG00000164300 uc003xtl.3 AK054658 NM_001077619 "CCDS43741|CCDS83297" Q14CS0 "8619474|9110174" MGI:1915303 RGD:1308557 UBXN2B 610686 +HGNC:14860 UBXN4 UBX domain protein 4 protein-coding gene gene with protein product Approved 2q21.3 02q21.3 KIAA0242 erasin "UBXDC1|UBXD2" "UBX domain-containing 2|UBX domain containing 2" UBX domain containing 364 2001-02-28 2008-07-25 2008-07-25 2016-10-05 23190 ENSG00000144224 OTTHUMG00000153577 uc002tur.4 D87684 NM_014607 CCDS42761 Q92575 16968747 MGI:1915062 RGD:1307451 UBXN4 611216 +HGNC:14928 UBXN6 UBX domain protein 6 protein-coding gene gene with protein product Approved 19p13 19p13 UBXDC2 UBXD1 "UBX domain-containing 1|UBX domain containing 1" UBX domain containing 364 2001-10-04 2008-07-25 2008-07-25 2014-11-19 80700 ENSG00000167671 OTTHUMG00000181954 uc002man.3 AF272893 NM_025241 "CCDS12129|CCDS54201" Q9BZV1 11342112 MGI:1913780 RGD:1590866 UBXN6 611946 +HGNC:29119 UBXN7 UBX domain protein 7 protein-coding gene gene with protein product Approved 3q29 03q29 KIAA0794 UBXD7 UBX domain containing 7 UBX domain containing 364 2006-01-06 2008-07-25 2008-07-25 2014-11-19 26043 ENSG00000163960 OTTHUMG00000155639 uc003fwm.5 AB018337 XM_087353 CCDS43191 O94888 "9872452|22537386" MGI:2146388 RGD:1306346 UBXN7 616379 +HGNC:41227 UBXN7-AS1 UBXN7 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 UBXN7 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-18 100874034 ENSG00000225822 OTTHUMG00000155674 uc062sbo.1 XR_001740548 +HGNC:30307 UBXN8 UBX domain protein 8 protein-coding gene gene with protein product Approved 8p12 08p12 "D8S2298E|REP8" UBXD6 UBX domain containing 6 UBX domain containing 364 2005-08-11 2008-07-25 2008-07-25 2016-01-15 7993 ENSG00000104691 OTTHUMG00000163851 uc033bgh.2 D83767 NM_005671 "CCDS75723|CCDS75724|CCDS75725" O00124 "9027507|21949850" MGI:1337129 RGD:1306023 UBXN8 602155 +HGNC:26354 UBXN10 UBX domain protein 10 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 FLJ25429 UBXD3 UBX domain containing 3 UBX domain containing 364 2004-01-09 2008-07-25 2008-07-25 2016-10-05 127733 ENSG00000162543 OTTHUMG00000002708 uc001bdb.4 AK058158 NM_152376 CCDS205 Q96LJ8 12477932 MGI:2443123 RGD:1308335 UBXN10 616783 +HGNC:41141 UBXN10-AS1 UBXN10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.12 01p36.12 2013-12-10 2014-11-18 101928017 ENSG00000225986 OTTHUMG00000002706 AI288607 NR_110078 +HGNC:30600 UBXN11 UBX domain protein 11 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "SOC|SOCI" socius UBXD5 UBX domain containing 5 UBX domain containing 364 2005-07-27 2008-07-25 2008-07-25 2014-11-18 91544 ENSG00000158062 OTTHUMG00000003382 uc057dqd.1 AF521017 NM_145345 "CCDS41286|CCDS41287|CCDS41288" Q5T124 11940653 MGI:1914836 RGD:620769 UBXN11 609151 +HGNC:37126 UCA1 urothelial cancer associated 1 (non-protein coding) non-coding RNA RNA, long non-coding Approved 19p13.12 19p13.12 "LINC00178|CUDR|UCAT1|onco-lncRNA-36" "long intergenic non-protein coding RNA 178|cancer up-regulated drug resistant" Long non-coding RNAs 788 2009-07-15 2015-07-29 652995 ENSG00000214049 OTTHUMG00000182287 uc002nbr.5 BC005351 NR_015379 "18501714|17416635|23801869" uca1 +HGNC:12512 UCHH2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-03-30 +HGNC:12513 UCHL1 ubiquitin C-terminal hydrolase L1 protein-coding gene gene with protein product Approved 4p13 04p13 "PGP9.5|Uch-L1" ubiquitin thiolesterase PARK5 ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) "Parkinson disease associated genes|Ubiquitin C-terminal hydrolases" "672|998" 1991-07-15 2015-11-13 2015-11-13 7345 ENSG00000154277 OTTHUMG00000099377 uc003gvo.4 BC000332 NM_004181 CCDS3462 P09936 1840236 MGI:103149 RGD:3928 UCHL1 191342 120375 C12.001 objectId:2426 3.4.19.12 +HGNC:40600 UCHL1-AS1 UCHL1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 4p13 04p13 2012-12-01 2014-11-19 101410542 ENSG00000251173 OTTHUMG00000160405 uc031sec.1 "DB169394|CN277289" NR_102709 +HGNC:12514 UCHL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-06-02 +HGNC:12515 UCHL3 ubiquitin C-terminal hydrolase L3 protein-coding gene gene with protein product Approved 13q22.2 13q22.2 ubiquitin thiolesterase ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) Ubiquitin C-terminal hydrolases 998 1991-07-15 2015-11-13 2016-10-05 7347 ENSG00000118939 OTTHUMG00000017090 uc001vjq.5 M30496 NM_006002 "CCDS9453|CCDS73586" P15374 2530630 MGI:1355274 RGD:1561196 UCHL3 603090 C12.003 objectId:2427 3.2.1.15 +HGNC:19678 UCHL5 ubiquitin C-terminal hydrolase L5 protein-coding gene gene with protein product Approved 1q31.2 01q31.2 "UCH37|CGI-70|INO80R" INO80 complex subunit R ubiquitin carboxyl-terminal hydrolase L5 "INO80 complex |Ubiquitin C-terminal hydrolases" "595|998" 2002-11-11 2015-11-13 2016-10-05 51377 ENSG00000116750 OTTHUMG00000035561 uc001gsm.4 NM_015984 "CCDS1378|CCDS55668|CCDS55669|CCDS55670" Q9Y5K5 "10810093|16027725" MGI:1914848 RGD:1305414 UCHL5 610667 C12.005 +HGNC:14859 UCK1 uridine-cytidine kinase 1 protein-coding gene gene with protein product Approved 9q34.13 09q34.13 "URK1|FLJ12255" 2004-05-28 2016-10-05 83549 ENSG00000130717 OTTHUMG00000020823 uc004cay.4 AF237290 NM_031432 "CCDS6944|CCDS48046|CCDS59151|CCDS59152" Q9HA47 11306702 MGI:98904 RGD:1308313 UCK1 609328 2.7.1.48 +HGNC:12562 UCK2 uridine-cytidine kinase 2 protein-coding gene gene with protein product Approved 1q24.1 01q24.1 UMPK uridine monophosphate kinase 2001-06-22 2004-07-14 2004-07-13 2016-10-05 7371 ENSG00000143179 OTTHUMG00000040117 uc021pec.2 AF236637 NM_012474 CCDS1252 Q9BZX2 MGI:1931744 RGD:620742 UCK2 609329 2.7.1.48 +HGNC:15938 UCKL1 uridine-cytidine kinase 1 like 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 FLJ20517 URKL1 "uridine kinase-like 1|uridine-cytidine kinase 1-like 1" 2001-06-21 2004-07-13 2016-04-06 2016-04-06 54963 ENSG00000198276 OTTHUMG00000033003 uc011abm.3 AK000524 NM_017859 "CCDS13547|CCDS54479" Q9NWZ5 MGI:1915806 RGD:1565465 UCKL1 610866 +HGNC:31967 UCKL1-AS1 UCKL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 FLJ46647 "UCKL1OS|UCKL1AS|UCKL1-AS" "uridine-cytidine kinase 1-like 1 opposite strand|UCKL1 antisense RNA (non-protein coding)|UCKL1 antisense RNA 1 (non-protein coding)" 2007-07-25 2010-11-25 2012-08-15 2012-10-12 100113386 ENSG00000280213 OTTHUMG00000187354 uc061yql.1 AK128497 NR_027287 +HGNC:25205 UCMA upper zone of growth plate and cartilage matrix associated protein-coding gene gene with protein product Approved 10p13 10p13 C10orf49 chromosome 10 open reading frame 49 2004-05-27 2009-03-25 2009-03-25 2014-11-19 221044 ENSG00000165623 OTTHUMG00000017692 uc057rts.1 BC018068 NM_145314 CCDS31147 Q8WVF2 12477932 MGI:1915777 RGD:1308977 UCMA +HGNC:12516 UCN urocortin protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "UROC|UI" prepro-urocortin Endogenous ligands 542 1998-01-21 2014-12-19 7349 ENSG00000163794 OTTHUMG00000097068 uc002rjp.2 AF038633 NM_003353 CCDS1747 P55089 "9628819|861256" MGI:1276123 RGD:3929 UCN 600945 +HGNC:18414 UCN2 urocortin 2 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "UCNI|SRP|URP|UCN-II" prepro-urocortin 2 Endogenous ligands 542 2004-04-20 2016-10-05 90226 ENSG00000145040 OTTHUMG00000133533 uc003cty.2 AF320560 NM_033199 CCDS2772 Q96RP3 11329063 MGI:2176375 RGD:620765 UCN2 605902 +HGNC:17781 UCN3 urocortin 3 protein-coding gene gene with protein product Approved 10p15.1 10p15.1 "UCNIII|SPC" "stresscopin|prepro-urocortin 3" Endogenous ligands 542 2003-11-06 2012-10-17 2014-11-19 114131 ENSG00000178473 OTTHUMG00000017594 uc001ihx.2 AF361943 NM_053049 CCDS7065 Q969E3 11416224 MGI:1932970 RGD:1562213 UCN3 605901 +HGNC:12517 UCP1 uncoupling protein 1 protein-coding gene gene with protein product Approved 4q31.1 04q31.1 SLC25A7 UCP uncoupling protein 1 (mitochondrial, proton carrier) Solute carriers 752 1991-08-19 2016-04-28 2016-04-28 7350 ENSG00000109424 OTTHUMG00000133415 uc011chj.3 X51955 XM_005263206 CCDS3753 P25874 2380264 MGI:98894 RGD:3931 UCP1 113730 SLC25A7 objectId:1066 +HGNC:12518 UCP2 uncoupling protein 2 protein-coding gene gene with protein product Approved 11q13 11q13 SLC25A8 BMIQ4 "body mass index QTL 4|body mass index quantitative trait 4|uncoupling protein 2 (mitochondrial, proton carrier)" Solute carriers 752 1997-07-11 2016-04-28 2016-04-28 7351 ENSG00000175567 OTTHUMG00000168095 uc001oup.2 U76367 NM_003355 CCDS8228 P55851 "9196039|11381268" MGI:109354 RGD:3932 UCP2 601693 SLC25A8 298784 objectId:1067 +HGNC:12519 UCP3 uncoupling protein 3 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 SLC25A9 uncoupling protein 3 (mitochondrial, proton carrier) Solute carriers 752 1997-07-11 2016-04-28 2016-04-28 7352 ENSG00000175564 OTTHUMG00000168109 uc001our.4 AF001787 NM_003356 "CCDS8229|CCDS44677" P55916 "9480760|9196039" MGI:1099787 RGD:3933 UCP3 602044 SLC25A9 objectId:1068 +HGNC:30866 UEVLD UEV and lactate/malate dehyrogenase domains protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "Attp|UEV3" 2006-07-14 2014-11-19 55293 ENSG00000151116 OTTHUMG00000167729 uc001mot.5 AF503350 NM_018314 "CCDS7843|CCDS41624|CCDS58122|CCDS58123|CCDS58124|CCDS58125|CCDS73266" Q8IX04 12427560 MGI:1860490 RGD:1587416 UEVLD 610985 +HGNC:26941 UFC1 ubiquitin-fold modifier conjugating enzyme 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 HSPC155 2005-05-27 2014-11-18 51506 ENSG00000143222 OTTHUMG00000033155 uc001fyd.5 AF161504 NM_016406 CCDS1220 Q9Y3C8 "15071506|11042152" MGI:1913405 RGD:1303313 UFC1 610554 +HGNC:12520 UFD1L ubiquitin fusion degradation 1 like (yeast) protein-coding gene gene with protein product Approved 22q11.21 22q11.21 UFD1 ubiquitin fusion degradation 1-like 1997-05-09 2005-10-10 2016-10-05 7353 ENSG00000070010 OTTHUMG00000150130 uc002zpm.3 AJ239058 XM_011530361 "CCDS13761|CCDS33600" Q92890 9063746 MGI:109353 RGD:619822 UFD1L 601754 159084 +HGNC:23039 UFL1 UFM1 specific ligase 1 protein-coding gene gene with protein product Approved 6q16.1 06q16.1 "NLBP|Maxer|RCAD" "novel LZAP-binding protein|Regulator of CDK5RAP3 and DDRGK1" KIAA0776 "KIAA0776|UFM1-specific ligase 1" 2003-11-21 2011-08-18 2016-03-11 2016-10-05 23376 ENSG00000014123 OTTHUMG00000015238 uc003por.4 BC036379 NM_015323 CCDS5034 O94874 "20018847|20164180|20228063|20531390" MGI:1914740 RGD:1309308 613372 +HGNC:41007 UFL1-AS1 UFL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q16.1 06q16.1 UFL1 antisense RNA 1 (non-protein coding) 2011-12-05 2012-08-15 2014-11-19 100861530 ENSG00000233797 OTTHUMG00000015237 uc063qdw.1 "BM126999|BM127608" +HGNC:20597 UFM1 ubiquitin fold modifier 1 protein-coding gene gene with protein product Approved 13q13.3 13q13.3 bA131P10.1 C13orf20 chromosome 13 open reading frame 20 2004-04-16 2005-05-27 2016-07-06 2016-07-06 51569 ENSG00000120686 OTTHUMG00000017409 uc001uwu.5 AF208844 NM_016617 "CCDS9366|CCDS66533" P61960 15071506 MGI:1915140 RGD:1304890 UFM1 610553 +HGNC:33821 UFSP1 UFM1 specific peptidase 1 (inactive) protein-coding gene gene with protein product Approved 7q22.1 07q22.1 UFSP UFM1-specific peptidase 1 (non-functional) 2008-03-25 2016-07-04 2016-07-04 402682 ENSG00000176125 OTTHUMG00000159662 uc003uxc.4 AF312032 NM_001015072 CCDS34710 Q6NVU6 "17182609|18321862" MGI:1917490 RGD:7536909 UFSP1 611481 C78.001 +HGNC:25640 UFSP2 UFM1 specific peptidase 2 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 FLJ11200 C4orf20 chromosome 4 open reading frame 20 2006-03-24 2008-03-25 2016-07-04 2016-07-04 55325 ENSG00000109775 OTTHUMG00000160441 uc003ixo.3 AK002062 NM_018359 CCDS3842 Q9NUQ7 17182609 MGI:1913679 RGD:1311161 UFSP2 611482 436858 C78.002 +HGNC:12524 UGCG UDP-glucose ceramide glucosyltransferase protein-coding gene gene with protein product Approved 9q31.3 09q31.3 GCS "glucosylceramide synthase|ceramide glucosyltransferase" UDP-glucose ceramide glucosyltransferases 450 1997-08-28 2016-10-05 7357 ENSG00000148154 OTTHUMG00000020498 uc004bft.4 D50840 NM_003358 CCDS6782 Q16739 "8643456|9605861" MGI:1332243 RGD:621870 UGCG 602874 objectId:2528 2.4.1.80 +HGNC:12525 UGDH UDP-glucose 6-dehydrogenase protein-coding gene gene with protein product Approved 4p14 04p14 UDP-glucose dehydrogenase 1997-12-01 2010-04-28 2015-08-24 7358 ENSG00000109814 OTTHUMG00000099371 uc003guk.3 AF061016 NM_003359 "CCDS3455|CCDS54757|CCDS54758" O60701 "9737970|10575217" MGI:1306785 RGD:621879 UGDH 603370 1.1.1.22 +HGNC:40601 UGDH-AS1 UGDH antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4p14 04p14 UGDH antisense RNA 1 (non-protein coding) 2011-11-07 2012-08-15 2014-11-19 100885776 ENSG00000249348 OTTHUMG00000160540 uc003gum.3 NR_047679 +HGNC:15663 UGGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 HUGT1 UGCGL1 UDP-glucose ceramide glucosyltransferase-like 1 UDP-glucose glycoprotein glucosyltransferases 440 2001-06-05 2009-07-23 2009-07-23 2014-11-19 56886 ENSG00000136731 OTTHUMG00000131570 uc002tps.4 AF227905 NM_020120 CCDS2154 Q9NYU2 10694380 MGI:2443162 RGD:619710 UGGT1 605897 +HGNC:15664 UGGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding gene gene with protein product Approved 13q32.1 13q32.1 "FLJ11485|HUGT2|FLJ10873|MGC150689|MGC87276|MGC117360" UDP-glucose:glycoprotein glucosyltransferase 2 UGCGL2 UDP-glucose ceramide glucosyltransferase-like 2 UDP-glucose glycoprotein glucosyltransferases 440 2001-06-05 2009-07-23 2009-07-23 2014-11-19 55757 ENSG00000102595 OTTHUMG00000017230 uc001vmt.5 AF227906 NM_020121 CCDS9480 Q9NYU1 10694380 MGI:1913685 RGD:1563520 UGGT2 605898 +HGNC:39934 UGGT2-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:12527 UGP2 UDP-glucose pyrophosphorylase 2 protein-coding gene gene with protein product Approved 2p15 02p15 UGPP1 UTP--glucose-1-phosphate uridylyltransferase UGP1 UDP-glucose pyrophosphorylase 1 2001-06-22 2016-10-05 7360 ENSG00000169764 OTTHUMG00000129513 uc002scm.4 NM_006759 "CCDS1875|CCDS42690" Q16851 MGI:2183447 RGD:1310210 UGP2 191760 2.7.7.9 +HGNC:12529 UGT1A UDP glucuronosyltransferase family 1 member A complex locus protein-coding gene gene with protein product Approved 2q37 02q37 UGT UGT1A@ "UDP glycosyltransferase 1 family, polypeptide A cluster|UDP glucuronosyltransferase 1 family, polypeptide A cluster|UDP glucuronosyltransferase 1 family, polypeptide A complex locus" UDP glucuronosyltransferases 363 1997-09-05 2010-03-05 2016-03-01 2016-03-01 7361 NG_002601 +HGNC:12530 UGT1A1 UDP glucuronosyltransferase family 1 member A1 other complex locus constituent Approved 2q37.1 02q37.1 UGT1A "UGT1|GNT1" UDP glycosyltransferase 1 family, polypeptide A1 UDP glucuronosyltransferases 363 1989-02-13 2016-03-01 2016-10-12 54658 ENSG00000241635 OTTHUMG00000059117 uc002vvb.4 M57899 NM_000463 CCDS2510 P22309 "9295054|9535849" MGI:98898 RGD:3935 LRG_733|http://www.lrg-sequence.org/LRG/LRG_733 UGT1A1 191740 120380 2.4.1.17 +HGNC:12534 UGT1A2P UDP glucuronosyltransferase family 1 member A2, pseudogene other complex locus constituent Approved 2q37.1 02q37.1 UGT1BP UDP glycosyltransferase 1 family, polypeptide A2 pseudogene UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-03-01 54580 ENSG00000228445 OTTHUMG00000059035 M84126 NG_001285 "9295054|1339448" PGOHUM00000298916 +HGNC:12535 UGT1A3 UDP glucuronosyltransferase family 1 member A3 other complex locus constituent Approved 2q37.1 02q37.1 UGT1C UDP glycosyltransferase 1 family, polypeptide A3 UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-10-05 54659 ENSG00000243135 OTTHUMG00000059118 uc002vuy.4 M84127 NM_019093 CCDS2509 P35503 "9295054|1339448|11434514" MGI:3576049 RGD:1549741 UGT1A3 606428 +HGNC:12536 UGT1A4 UDP glucuronosyltransferase family 1 member A4 other complex locus constituent Approved 2q37.1 02q37.1 "HUG-BR2|UGT1D" UDP glycosyltransferase 1 family, polypeptide A4 UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-03-01 54657 ENSG00000244474 OTTHUMG00000059119 uc002vux.4 M84128 NM_007120 CCDS33405 P22310 "9295054|1339448" MGI:3032634 UGT1A4 606429 +HGNC:12537 UGT1A5 UDP glucuronosyltransferase family 1 member A5 other complex locus constituent Approved 2q37.1 02q37.1 UGT1E UDP glycosyltransferase 1 family, polypeptide A5 UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-10-05 54579 ENSG00000240224 OTTHUMG00000059120 uc002vuw.4 M84129 NM_019078 CCDS33404 P35504 "9295054|1339448" UGT1A5 606430 +HGNC:12538 UGT1A6 UDP glucuronosyltransferase family 1 member A6 other complex locus constituent Approved 2q37.1 02q37.1 "HLUGP|GNT1|UGT1F" UDP glycosyltransferase 1 family, polypeptide A6 UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-10-05 54578 ENSG00000167165 OTTHUMG00000059122 uc002vuv.5 M84130 NM_205862 "CCDS2507|CCDS2508" P19224 "9295054|1339448" "MGI:2137698|MGI:3580629" UGT1A6 606431 +HGNC:12539 UGT1A7 UDP glucuronosyltransferase family 1 member A7 other complex locus constituent Approved 2q37.1 02q37.1 UGT1G UDP glycosyltransferase 1 family, polypeptide A7 UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-10-05 54577 ENSG00000244122 OTTHUMG00000059004 uc002vut.4 U39570 NM_019077 CCDS2506 Q9HAW7 "9295054|11434514" "MGI:3576092|MGI:3580642" UGT1A7 606432 +HGNC:12540 UGT1A8 UDP glucuronosyltransferase family 1 member A8 other complex locus constituent Approved 2q37.1 02q37.1 UGT1H UDP glycosyltransferase 1 family, polypeptide A8 UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-03-01 54576 ENSG00000242366 OTTHUMG00000059123 uc002vup.4 U42604 NM_019076 CCDS33402 Q9HAW9 "9295054|12042666" "MGI:3576092|MGI:3580642" UGT1A8 606433 +HGNC:12541 UGT1A9 UDP glucuronosyltransferase family 1 member A9 other complex locus constituent Approved 2q37.1 02q37.1 "HLUGP4|LUGP4|UGT1AI" UDP glycosyltransferase 1 family, polypeptide A9 UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-10-05 54600 ENSG00000241119 OTTHUMG00000059124 uc002vus.4 AF056188 NM_021027 CCDS2505 O60656 "9295054|1910331" "MGI:3576092|MGI:3580642" RGD:1549771 UGT1A9 606434 +HGNC:12531 UGT1A10 UDP glucuronosyltransferase family 1 member A10 other complex locus constituent Approved 2q37.1 02q37.1 UGT1J UDP glycosyltransferase 1 family, polypeptide A10 UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-10-05 54575 ENSG00000242515 OTTHUMG00000059121 uc002vur.4 U39550 NM_019075 CCDS33403 Q9HAW8 "9295054|9325166" "MGI:3576092|MGI:3580642" UGT1A10 606435 +HGNC:12532 UGT1A11P UDP glucuronosyltransferase family 1 member A11, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 UGT1K UDP glycosyltransferase 1 family, polypeptide A11 pseudogene UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-10-05 54574 ENSG00000227846 OTTHUMG00000059006 U39551 NG_001284 9295054 PGOHUM00000298914 +HGNC:12533 UGT1A12P UDP glucuronosyltransferase family 1 member A12, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 UGT1L UDP glycosyltransferase 1 family, polypeptide A12 pseudogene UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-03-01 54573 ENSG00000228949 OTTHUMG00000059116 U39552 NG_001283 9295054 PGOHUM00000298913 +HGNC:32191 UGT1A13P UDP glucuronosyltransferase family 1 member A13, pseudogene pseudogene pseudogene Approved 2q37.1 02q37.1 UDP glucuronosyltransferase 1 family, polypeptide A13 pseudogene UDP glucuronosyltransferases 363 2005-08-09 2016-03-01 2016-03-01 404204 ENSG00000234143 OTTHUMG00000059007 AF297093 NG_023770 11434514 PGOHUM00000298915 +HGNC:12542 UGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "UDP glycosyltransferase 2 family, polypeptide A1|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus" UDP glucuronosyltransferases 363 1999-08-12 2016-03-01 2016-03-01 10941 ENSG00000173610 OTTHUMG00000184942 uc062xbf.1 AJ006054 NM_006798 "CCDS3529|CCDS58901|CCDS58902|CCDS77925" Q9Y4X1 10359671 MGI:2149905 RGD:69432 UGT2A1 604716 +HGNC:28183 UGT2A2 UDP glucuronosyltransferase family 2 member A2 other complex locus constituent Approved 4q13.3 04q13.3 UDP glucuronosyltransferase 2 family, polypeptide A2 UDP glucuronosyltransferases 363 2005-07-20 2016-03-01 2016-03-01 574537 ENSG00000271271 OTTHUMG00000129398 uc010ihs.4 NM_001105677 "CCDS56331|CCDS77924" Q9Y4X1 MGI:3576095 +HGNC:28528 UGT2A3 UDP glucuronosyltransferase family 2 member A3 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 FLJ21934 UDP glucuronosyltransferase 2 family, polypeptide A3 UDP glucuronosyltransferases 363 2005-07-20 2016-03-01 2016-03-01 79799 ENSG00000135220 OTTHUMG00000129408 uc003hef.3 NM_024743 CCDS3525 Q6UWM9 MGI:1919344 UGT2A3 616382 +HGNC:39429 UGT2A3P7 UDP glucuronosyltransferase family 2 member A3 pseudogene 7 pseudogene pseudogene Approved 4q13.3 04q13.3 UDP glucuronosyltransferase 2 family, polypeptide A3 pseudogene 7 2010-12-14 2016-03-01 2016-03-01 100422023 ENSG00000248886 OTTHUMG00000161619 NG_025126 PGOHUM00000299879 +HGNC:12553 UGT2B4 UDP glucuronosyltransferase family 2 member B4 protein-coding gene gene with protein product Approved 4q13.3 04q13.3 UGT2B11 UDP glycosyltransferase 2 family, polypeptide B4 UDP glucuronosyltransferases 363 1997-07-01 2016-03-01 2016-03-01 7363 ENSG00000156096 OTTHUMG00000058891 uc003hek.4 BC026264 NM_021139 "CCDS43234|CCDS75137" P06133 "3109396|7835904" UGT2B4 600067 +HGNC:12554 UGT2B7 UDP glucuronosyltransferase family 2 member B7 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 UGT2B9 UDP glycosyltransferase 2 family, polypeptide B7 UDP glucuronosyltransferases 363 1997-07-01 2016-03-01 2016-10-05 7364 ENSG00000171234 OTTHUMG00000129404 uc003heg.4 BC030974 NM_001074 "CCDS3526|CCDS82930" P16662 "2159463|7835904" "MGI:3576100|MGI:3576103" RGD:708417 UGT2B7 600068 +HGNC:12544 UGT2B10 UDP glucuronosyltransferase family 2 member B10 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 UDP glycosyltransferase 2 family, polypeptide B10 UDP glucuronosyltransferases 363 1997-07-01 2016-03-01 2016-03-01 7365 ENSG00000109181 OTTHUMG00000161505 uc003hee.4 X63359 NM_001075 "CCDS75135|CCDS75136" P36537 8333863 MGI:2140962 UGT2B10 600070 +HGNC:12545 UGT2B11 UDP glucuronosyltransferase family 2 member B11 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 UDP glycosyltransferase 2 family, polypeptide B11 UDP glucuronosyltransferases 363 1998-09-29 2016-03-01 2016-10-05 10720 ENSG00000213759 OTTHUMG00000129395 uc062xas.1 AF016492 NM_001073 CCDS3527 O75310 9675083 UGT2B11 603064 +HGNC:12546 UGT2B15 UDP glucuronosyltransferase family 2 member B15 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 UGT2B8 UDP glycosyltransferase 2 family, polypeptide B15 UDP glucuronosyltransferases 363 1997-07-01 2016-03-01 2016-10-05 7366 ENSG00000196620 OTTHUMG00000161507 uc062xap.1 AF180322 NM_001076 CCDS3524 P54855 7835904 UGT2B15 600069 +HGNC:12547 UGT2B17 UDP glucuronosyltransferase family 2 member B17 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 UDP glycosyltransferase 2 family, polypeptide B17 "UDP glucuronosyltransferases|Minor histocompatibility antigens" "363|870" 1997-07-01 2016-03-01 2016-10-05 7367 ENSG00000197888 OTTHUMG00000129305 uc021xov.2 U59209 NM_001077 CCDS3523 O75795 8798464 MGI:1919023 RGD:708541 UGT2B17 601903 +HGNC:12548 UGT2B24P UDP glucuronosyltransferase family 2 member B24, pseudogene pseudogene pseudogene Approved 4q13.3 04q13.3 UDP glycosyltransferase 2 family, polypeptide B24 pseudogene UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-03-01 54572 ENSG00000249956 OTTHUMG00000161615 AF179876 NG_001282 10623541 PGOHUM00000300255 +HGNC:12549 UGT2B25P UDP glucuronosyltransferase family 2 member B25, pseudogene pseudogene pseudogene Approved 4q13.2-q13.3 04q13.2-q13.3 "UDP glycosyltransferase 2 family, polypeptide B25 pseudogene|UDP glucuronosyltransferase 2 family, polypeptide B25 pseudogene" UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-10-11 54571 ENSG00000215110 OTTHUMG00000161617 AF179877 NG_001281 10623541 PGOHUM00000300253 +HGNC:12550 UGT2B26P UDP glucuronosyltransferase family 2 member B26, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 UDP glycosyltransferase 2 family, polypeptide B26 pseudogene UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-03-01 54570 ENSG00000250919 OTTHUMG00000161514 AF179878 NG_001280 10623541 PGOHUM00000300242 +HGNC:12551 UGT2B27P UDP glucuronosyltransferase family 2 member B27, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 UDP glycosyltransferase 2 family, polypeptide B27 pseudogene UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-03-01 54569 ENSG00000251685 OTTHUMG00000161513 AF179879 NG_001279 10623541 PGOHUM00000299875 +HGNC:13479 UGT2B28 UDP glucuronosyltransferase family 2 member B28 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 UDP glycosyltransferase 2 family, polypeptide B28 UDP glucuronosyltransferases 363 2001-06-25 2016-03-01 2016-10-05 54490 ENSG00000135226 OTTHUMG00000129401 uc003hej.3 AF177272 NM_053039 "CCDS3528|CCDS56330" Q9BY64 11300766 "MGI:98900|MGI:2140794|MGI:2148239" RGD:1559459 UGT2B28 606497 +HGNC:12552 UGT2B29P UDP glucuronosyltransferase family 2 member B29, pseudogene pseudogene pseudogene Approved 4q13.2 04q13.2 UDP glycosyltransferase 2 family, polypeptide B28 pseudogene UDP glucuronosyltransferases 363 2000-06-22 2016-03-01 2016-03-01 54568 ENSG00000250566 OTTHUMG00000160743 AF179880 NG_001278 10623541 PGOHUM00000299862 +HGNC:12543 UGT2B@ entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-04-30 +HGNC:26625 UGT3A1 UDP glycosyltransferase family 3 member A1 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 FLJ34658 UDP glycosyltransferase 3 family, polypeptide A1 UDP glucuronosyltransferases 363 2005-07-20 2016-03-01 2016-03-01 133688 ENSG00000145626 OTTHUMG00000131107 uc003jjv.3 NM_152404 "CCDS3913|CCDS54841" Q6NUS8 "MGI:2146055|MGI:2145969" RGD:1564365 UGT3A1 616383 +HGNC:27266 UGT3A2 UDP glycosyltransferase family 3 member A2 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 UDP glycosyltransferase 3 family, polypeptide A2 UDP glucuronosyltransferases 363 2005-07-20 2016-03-01 2016-03-01 167127 ENSG00000168671 OTTHUMG00000131108 uc003jjz.3 NM_174914 "CCDS3914|CCDS54842" Q3SY77 12975309 "MGI:2146055|MGI:2145969" UGT3A2 616384 +HGNC:12555 UGT8 UDP glycosyltransferase 8 protein-coding gene gene with protein product Approved 4q26 04q26 2-hydroxyacylsphingosine 1-beta-galactosyltransferase CGT UDP-galactose ceramide galactosyltransferase UDP glucuronosyltransferases 363 1996-10-02 2005-07-20 2008-07-31 2015-09-03 7368 ENSG00000174607 OTTHUMG00000132915 uc003ibs.3 AK127970 NM_003360 CCDS3705 Q16880 8661025 MGI:109522 RGD:3938 UGT8 601291 2.4.1.45 +HGNC:19683 UHMK1 U2AF homology motif kinase 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "KIS|Kist" U2AF homology motif (UHM) kinase 1 RNA binding motif containing 725 2004-12-09 2016-08-10 2016-10-05 127933 ENSG00000152332 OTTHUMG00000031373 uc001gcc.3 BC026046 NM_175866 "CCDS1239|CCDS53423|CCDS53424" Q8TAS1 "12093740|12782393" MGI:1341908 RGD:2968 UHMK1 608849 objectId:2270 +HGNC:12556 UHRF1 ubiquitin like with PHD and ring finger domains 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "ICBP90|Np95|FLJ21925|RNF106|TDRD22" "Ring finger proteins|PHD finger proteins|Tudor domain containing" "58|88|780" 2000-03-15 2016-03-02 2016-03-02 29128 ENSG00000276043 OTTHUMG00000180251 uc060rzz.1 AF129507 NM_001048201 "CCDS74262|CCDS74263" Q96T88 10646863 MGI:1338889 RGD:1595855 UHRF1 607990 +HGNC:21216 UHRF1BP1 UHRF1 binding protein 1 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "FLJ20302|dJ349A12.1|ICBP90" C6orf107 chromosome 6 open reading frame 107 2003-11-25 2007-11-27 2008-08-15 2014-11-19 54887 ENSG00000065060 OTTHUMG00000014557 uc003oju.5 AB126777 NM_017754 CCDS43455 Q6BDS2 MGI:3041238 RGD:1307264 UHRF1BP1 +HGNC:29102 UHRF1BP1L UHRF1 binding protein 1 like protein-coding gene gene with protein product Approved 12q23.1 12q23.1 KIAA0701 2007-11-27 2016-03-02 2016-03-02 23074 ENSG00000111647 OTTHUMG00000170195 uc001tgq.4 NM_001006947 "CCDS31882|CCDS31883" A0JNW5 MGI:2442888 RGD:1594520 UHRF1BP1L +HGNC:12557 UHRF2 ubiquitin like with PHD and ring finger domains 2 protein-coding gene gene with protein product Approved 9p24.1 09p24.1 "RNF107|NIRF|URF2|MGC33463|TDRD23" Np95-like ring finger protein ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase "Ring finger proteins|PHD finger proteins|Tudor domain containing" "58|88|780" 2000-03-15 2016-03-02 2016-03-02 115426 ENSG00000147854 OTTHUMG00000019521 uc003zjy.4 AF274049 NM_152306 CCDS6469 Q96PU4 12176013 MGI:1923718 RGD:1309990 UHRF2 615211 +HGNC:39565 UHRF2P1 ubiquitin like with PHD and ring finger domains 2 pseudogene 1 pseudogene pseudogene Approved Xq13.2 Xq13.2 2011-03-09 2016-03-02 2016-03-02 260337 ENSG00000223650 OTTHUMG00000021844 NG_002342 PGOHUM00000258439 +HGNC:30298 UIMC1 ubiquitin interaction motif containing 1 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 RAP80 receptor associated protein 80 BRCA1 A complex 1328 2006-10-27 2014-11-19 51720 ENSG00000087206 OTTHUMG00000130852 uc063kao.1 AF349313 NM_016290 "CCDS4408|CCDS83050" Q96RL1 12080054 MGI:103185 RGD:1307009 UIMC1 609433 +HGNC:14893 ULBP1 UL16 binding protein 1 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 RAET1I 2001-04-27 2016-10-05 80329 ENSG00000111981 OTTHUMG00000015810 uc003qnp.5 AF304377 XM_017011322 CCDS5223 Q9BZM6 "11239445|11827464" MGI:1925027 ULBP1 605697 +HGNC:14894 ULBP2 UL16 binding protein 2 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 RAET1H 2001-04-27 2016-10-05 80328 ENSG00000131015 OTTHUMG00000015803 uc003qno.4 AF304378 XM_017011321 CCDS5222 Q9BZM5 11239445 MGI:1925027 RGD:1584760 ULBP2 605698 +HGNC:14895 ULBP3 UL16 binding protein 3 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 RAET1N 2001-04-27 2016-10-05 79465 ENSG00000131019 OTTHUMG00000015811 uc063sfx.1 AF304379 NM_024518 CCDS5225 Q9BZM4 "11239445|11827464" MGI:3588256 ULBP3 605699 +HGNC:12558 ULK1 unc-51 like autophagy activating kinase 1 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "ATG1|ATG1A" ATG1 autophagy related 1 homolog (S. cerevisiae) "unc-51 (C. elegans)-like kinase 1|unc-51-like kinase 1 (C. elegans)" Autophagy related 1022 1998-09-03 2013-07-02 2016-10-05 8408 ENSG00000177169 OTTHUMG00000168052 uc001uje.4 AF045458 XM_011538798 CCDS9274 O75385 9693035 MGI:1270126 RGD:1589743 ULK1 603168 objectId:2271 +HGNC:13480 ULK2 unc-51 like autophagy activating kinase 2 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "KIAA0623|Unc51.2|ATG1B" "unc-51 (C. elegans)-like kinase 2|unc-51-like kinase 2 (C. elegans)" Autophagy related 1022 2001-11-23 2013-07-02 2014-11-18 9706 ENSG00000083290 OTTHUMG00000059511 uc002gwm.5 AB014523 NM_014683 CCDS11213 Q8IYT8 10557072 MGI:1352758 RGD:1310181 ULK2 608650 objectId:2272 2.7.11.1 +HGNC:19703 ULK3 unc-51 like kinase 3 protein-coding gene gene with protein product Approved 15q24.1 15q24.1 "DKFZP434C131|FLJ90566" unc-51-like kinase 3 (C. elegans) 2005-01-19 2013-07-02 2014-11-19 25989 ENSG00000140474 OTTHUMG00000173020 uc059llp.1 BC048289 NM_015518 "CCDS45305|CCDS76779" Q6PHR2 MGI:1918992 RGD:1587417 ULK3 613472 objectId:2273 +HGNC:15784 ULK4 unc-51 like kinase 4 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "FLJ20574|REC01035|FAM7C1" unc-51-like kinase 4 (C. elegans) 2005-01-19 2013-07-02 2014-11-19 54986 ENSG00000168038 OTTHUMG00000156210 uc003ckv.5 AK000581 XM_929989 CCDS43071 Q96C45 12477932 MGI:1921622 RGD:1565726 ULK4 617010 objectId:2274 +HGNC:41413 ULK4-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:15775 ULK4P1 ULK4 pseudogene 1 pseudogene pseudogene Approved 15q13.3 15q13.3 D-X FAM7A1 "family with sequence similarity 7, member A1|family with sequence similarity 7, member A1 (non-protein coding)|unc-51-like kinase 4 (C. elegans) pseudogene 1" 2001-06-29 2011-11-25 2013-09-12 2014-11-19 89838 ENSG00000261279 OTTHUMG00000162940 BC070492 XR_041690 11829490 PGOHUM00000246727 +HGNC:15776 ULK4P2 ULK4 pseudogene 2 pseudogene pseudogene Approved 15q13.2 15q13.2 D-X FAM7A2 "family with sequence similarity 7, member A2|unc-51-like kinase 4 (C. elegans) pseudogene 2" 2001-06-29 2011-11-25 2013-09-12 2014-11-19 100288380 ENSG00000260128 OTTHUMG00000175653 NR_027470 11829490 PGOHUM00000262914 +HGNC:15777 ULK4P3 ULK4 pseudogene 3 pseudogene pseudogene Approved 15q13.2 15q13.2 D-X FAM7A3 "family with sequence similarity 7, member A3|unc-51-like kinase 4 (C. elegans) pseudogene 3" 2001-06-29 2011-11-25 2013-09-12 2014-03-20 89837 ENSG00000178081 OTTHUMG00000175637 BC023564 NR_026859 11829490 PGOHUM00000247040 +HGNC:48955 UMAD1 UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding gene gene with protein product Approved 7p21.3 07p21.3 "RPA3-AS1|RPA3OS" "RPA3 antisense RNA 1|RPA3 opposite strand" 2013-07-23 2014-10-10 2014-10-10 2014-10-15 729852 ENSG00000219545 OTTHUMG00000152007 AK027125 NM_001302348 CCDS83158 C9J7I0 20448139 MGI:3840148 +HGNC:12559 UMOD uromodulin protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "Tamm-Horsfall glycoprotein|uromucoid" uromodulin (uromucoid, Tamm-Horsfall glycoprotein) 1992-07-27 2008-06-23 2015-08-26 7369 ENSG00000169344 OTTHUMG00000131488 uc059rpt.1 M17778 XM_017023641 "CCDS10583|CCDS61876" P07911 8382593 MGI:102674 RGD:3940 UMOD 191845 120412 +HGNC:12560 UMODL1 uromodulin like 1 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 olfactorin 2000-05-17 2015-11-23 2015-11-23 89766 ENSG00000177398 OTTHUMG00000086788 uc002zag.1 XM_017028506 "CCDS42935|CCDS42936|CCDS56214|CCDS56215" Q5DID0 16026467 MGI:1929785 RGD:1566039 UMODL1 613859 +HGNC:23821 UMODL1-AS1 UMODL1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 FLJ33471 C21orf128 chromosome 21 open reading frame 128 2003-12-15 2014-10-01 2014-10-01 2014-10-01 150147 ENSG00000184385 OTTHUMG00000086790 NR_027243 Q8N2C9 +HGNC:12563 UMPS uridine monophosphate synthetase protein-coding gene gene with protein product Approved 3q21.2 03q21.2 orotate phosphoribosyl transferase and orotidine-5'-decarboxylase 1986-01-01 2008-02-04 2016-10-05 7372 ENSG00000114491 OTTHUMG00000159431 uc003ehl.5 NM_000373 CCDS3029 P11172 2767686 MGI:1298388 RGD:1311908 UMPS 613891 120414 "2.4.2.10|4.1.1.23" +HGNC:12567 UNC5A unc-5 netrin receptor A protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "KIAA1976|UNC5H1" "unc5 (C.elegans homolog) a|unc-5 homolog A (C. elegans)" I-set domain containing 593 1998-12-09 2015-06-19 2016-10-05 90249 ENSG00000113763 OTTHUMG00000163225 uc003mey.4 AB075856 XM_030300 CCDS34299 Q6ZN44 "12655055|20372800" MGI:894682 RGD:621755 UNC5A 607869 +HGNC:12568 UNC5B unc-5 netrin receptor B protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "UNC5H2|p53RDL1" "unc5 (C.elegans homolog) b|unc-5 homolog B (C. elegans)" I-set domain containing 593 1998-12-09 2015-06-19 2016-10-05 219699 ENSG00000107731 OTTHUMG00000018422 uc001jro.4 AB096256 NM_170744 "CCDS7309|CCDS58083" Q8IZJ1 "12655055|20693423" MGI:894703 RGD:621756 UNC5B 607870 +HGNC:45096 UNC5B-AS1 UNC5B antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.1 10q22.1 2013-02-14 2013-02-14 728978 ENSG00000237512 OTTHUMG00000018423 uc021psk.1 NR_038453 +HGNC:12569 UNC5C unc-5 netrin receptor C protein-coding gene gene with protein product Approved 4q22.3 04q22.3 "unc5 (C.elegans homolog) c|unc-5 homolog C (C. elegans)" I-set domain containing 593 1998-12-09 2015-06-19 2016-10-05 8633 ENSG00000182168 OTTHUMG00000130989 uc003hto.4 AF055634 NM_003728 CCDS3643 O95185 "9126742|9782087|12655055" MGI:1095412 RGD:735109 UNC5C 603610 +HGNC:21203 UNC5CL unc-5 family C-terminal like protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "MGC34763|ZUD" ZU5 and death domain containing unc-5 homolog C (C. elegans)-like 2003-05-28 2015-06-19 2015-06-19 222643 ENSG00000124602 OTTHUMG00000014665 uc003opi.4 BC035284 NM_173561 CCDS4847 Q8IV45 14769797 MGI:1923839 RGD:1587368 UNC5CL +HGNC:18634 UNC5D unc-5 netrin receptor D protein-coding gene gene with protein product Approved 8p12 08p12 "KIAA1777|Unc5h4" unc-5 homolog D (C. elegans) I-set domain containing 593 2002-05-13 2015-06-19 2015-06-19 137970 ENSG00000156687 OTTHUMG00000157145 uc003xjr.3 AB055056 NM_080872 "CCDS6093|CCDS83279" Q6UXZ4 18402767 MGI:2389364 RGD:1309245 UNC5D 616466 +HGNC:23150 UNC13A unc-13 homolog A protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "KIAA1032|Munc13-1" unc-13 homolog A (C. elegans) UNC13 homologs 836 2003-10-16 2016-06-24 2016-10-05 23025 ENSG00000130477 OTTHUMG00000163877 uc060vkq.1 AB028955 NM_001080421 CCDS46013 Q9UPW8 MGI:3051532 RGD:619722 UNC13A 609894 406692 +HGNC:12566 UNC13B unc-13 homolog B protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "hmunc13|Unc13h2" UNC13 "unc-13-like (C. elegans)|unc-13 homolog B (C. elegans)" UNC13 homologs 836 1998-10-30 2003-10-17 2016-06-24 2016-06-24 10497 ENSG00000198722 OTTHUMG00000019856 uc003zwq.4 AF020202 NM_006377 "CCDS6579|CCDS83361" O14795 9607201 MGI:1342278 RGD:619723 UNC13B 605836 +HGNC:23149 UNC13C unc-13 homolog C protein-coding gene gene with protein product Approved 15q21.3 15q21.3 "Munc13-3|DKFZp547H074" unc-13 homolog C (C. elegans) UNC13 homologs 836 2003-10-16 2016-06-24 2016-06-24 440279 ENSG00000137766 OTTHUMG00000172542 uc059jkr.1 AK091491 NM_173166 CCDS45264 Q8NB66 MGI:2149021 RGD:628592 UNC13C 614568 +HGNC:23147 UNC13D unc-13 homolog D protein-coding gene gene with protein product Approved 17q25.3 17q25.3 Munc13-4 unc-13 homolog D (C. elegans) UNC13 homologs 836 2003-10-16 2016-04-05 2016-10-12 201294 ENSG00000092929 OTTHUMG00000179895 uc002jpp.5 AK024474 XM_113950 CCDS11730 Q70J99 MGI:1917700 RGD:628593 "UNC13Dbase: Mutation registry for Familial hemophagocytic lymphohistiocytosis 3|http://structure.bmc.lu.se/idbase/UNC13Dbase/|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=UNC13D|LRG_122|http://www.lrg-sequence.org/LRG/LRG_122" UNC13D 608897 120416 +HGNC:30594 UNC45A unc-45 myosin chaperone A protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "SMAP-1|GC-UNC45" smooth muscle cell associated protein-1 unc-45 homolog A (C. elegans) 2005-11-17 2015-06-19 2015-06-19 55898 ENSG00000140553 OTTHUMG00000141261 uc002bqg.4 NM_018671 "CCDS10367|CCDS42082" Q9H3U1 "25444911|25487020" MGI:2142246 RGD:1305357 UNC45A 611219 +HGNC:14304 UNC45B unc-45 myosin chaperone B protein-coding gene gene with protein product Approved 17q12 17q12 UNC45 CMYA4 "cardiomyopathy associated 4|unc-45 homolog B (C. elegans)" 2002-04-03 2005-11-17 2015-06-19 2015-06-19 146862 ENSG00000141161 OTTHUMG00000132931 uc002hja.3 AW755253 NM_173167 "CCDS11292|CCDS45648|CCDS76993" Q8IWX7 "24549050|25487020" MGI:2443377 RGD:1305666 UNC45B 611220 405637 +HGNC:16046 UNC50 unc-50 inner nuclear membrane RNA binding protein protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "URP|UNCL|GMH1" unc-50 homolog (C. elegans) 2004-01-21 2016-04-29 2016-10-05 25972 ENSG00000115446 OTTHUMG00000130562 uc002szc.5 NM_014044 "CCDS2035|CCDS82485" Q53HI1 10980252 MGI:1914637 RGD:621749 UNC50 +HGNC:19966 UNC79 unc-79 homolog (C. elegans) protein-coding gene gene with protein product Approved 14q32.12 14q32.12 KIAA1409 KIAA1409 2003-11-21 2011-08-18 2011-08-18 2016-10-05 57578 ENSG00000133958 OTTHUMG00000029783 uc001ybs.2 AB037830 XM_028395 CCDS9911 Q9P2D8 "20714347|21040849" MGI:2684729 RGD:1311117 UNC79 616884 +HGNC:26582 UNC80 unc-80 homolog, NALCN activator protein-coding gene gene with protein product Approved 2q34 02q34 "FLJ33496|KIAA1843|UNC-80" C2orf21 "chromosome 2 open reading frame 21|unc-80 homolog (C. elegans)" 2004-01-20 2009-08-17 2015-11-19 2016-10-05 285175 ENSG00000144406 OTTHUMG00000132963 uc021vvx.2 AK090815 NM_182587 "CCDS2387|CCDS46504" Q8N2C7 "19092807|19535918" MGI:2652882 RGD:1309976 UNC80 612636 463796 +HGNC:12570 UNC93A unc-93 homolog A (C. elegans) protein-coding gene gene with protein product Approved 6q27 06q27 "dJ366N23.2|dJ366N23.1" unc93 (C.elegans) homolog A 2000-06-15 2001-11-28 2014-11-19 54346 ENSG00000112494 OTTHUMG00000016021 uc003qvq.4 AJ508812 NM_018974 "CCDS5300|CCDS47515" Q86WB7 12381271 MGI:3712668 RGD:1583290 UNC93A 607995 +HGNC:13481 UNC93B1 unc-93 homolog B1 (C. elegans) protein-coding gene gene with protein product Approved 11q13.2 11q13.2 UNC93 unc93 (C. elegans) homolog B1 2002-01-22 2001-11-28 2016-10-12 81622 ENSG00000110057 OTTHUMG00000167472 uc031xth.1 AJ271326 NM_030930 CCDS73334 Q9H1C4 11867227 MGI:1859307 RGD:1311984 "UNC93B1base: Mutation registry for UNC93B deficiency (Herpes simplex encephalitis)|http://structure.bmc.lu.se/idbase/UNC93B1base/|LRG_123|http://www.lrg-sequence.org/LRG/LRG_123" 608204 120419 +HGNC:13482 UNC93B2 unc-93 homolog B2 pseudogene (C. elegans) pseudogene pseudogene Approved 7p22.1 07p22.1 UNC93B2P 2008-02-28 2008-02-28 2015-03-27 641922 ENSG00000155070 OTTHUMG00000151911 NG_013106 11867227 +HGNC:13483 UNC93B3 unc-93 homolog B3 pseudogene (C. elegans) pseudogene pseudogene Approved 3p12.3 03p12.3 UNC93B3P 2008-02-28 2008-02-28 2014-11-18 285296 ENSG00000172971 OTTHUMG00000158960 XR_016294 11867227 PGOHUM00000250288 +HGNC:13484 UNC93B4 unc-93 homolog B4 pseudogene (C. elegans) pseudogene pseudogene Approved 4p16.3 04p16.3 2008-02-28 2001-11-28 2014-11-19 643384 ENSG00000250381 OTTHUMG00000159866 XR_016363 11867227 PGOHUM00000245440 +HGNC:34051 UNC93B5 unc-93 homolog B5 pseudogene (C. elegans) pseudogene pseudogene Approved 11q13.2 11q13.2 unc-93 homolog B5 (C. elegans) 2008-04-03 2012-04-18 2014-11-19 729196 ENSG00000184795 OTTHUMG00000167244 NG_028989 PGOHUM00000258569 +HGNC:34053 UNC93B6 unc-93 homolog B6 pseudogene (C. elegans) pseudogene pseudogene Approved 11q13.4 11q13.4 unc-93 homolog B6 (C. elegans) 2008-04-03 2015-02-27 2015-02-27 255620 ENSG00000255562 OTTHUMG00000167455 NG_009705.1 UNC93B6 +HGNC:44036 UNC93B7 unc-93 homolog B7 pseudogene (C. elegans) pseudogene pseudogene Approved 4p16.1 04p16.1 2012-05-29 2012-05-31 100887746 ENSG00000251624 OTTHUMG00000160194 NG_032765 PGOHUM00000259931 +HGNC:44037 UNC93B8 unc-93 homolog B8 pseudogene (C. elegans) pseudogene pseudogene Approved 4p16.1 04p16.1 2012-05-29 2012-05-31 100887748 ENSG00000249272 OTTHUMG00000160098 NG_032767 PGOHUM00000245821 +HGNC:12565 UNC119 unc-119 lipid binding chaperone protein-coding gene gene with protein product Approved 17q11.2 17q11.2 "HRG4|POC7|POC7A" POC7 centriolar protein homolog A (Chlamydomonas) "unc119 (C.elegans) homolog|unc-119 homolog (C. elegans)" 1999-01-29 2015-06-19 2016-10-12 9094 ENSG00000109103 OTTHUMG00000132606 uc002hbk.3 U40998 XM_017025289 "CCDS11233|CCDS11234|CCDS82094" Q13432 "8576185|9538874" MGI:1328357 RGD:3942 "Mutations of HRG4|http://www.retina-international.org/files/sci-news/hrg4mut.htm|LRG_341|http://www.lrg-sequence.org/LRG/LRG_341" UNC119 604011 227401 +HGNC:16488 UNC119B unc-119 lipid binding chaperone B protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "MGC5139|POC7B" POC7 centriolar protein homolog B (Chlamydomonas) "unc119 (C.elegans) homolog B|unc-119 homolog B (C. elegans)" 2001-09-06 2015-06-19 2016-10-05 84747 ENSG00000175970 OTTHUMG00000169201 uc001tyz.4 NM_001080533 CCDS31914 A6NIH7 23000199 MGI:2147162 UNC119B +HGNC:33194 UNCX UNC homeobox protein-coding gene gene with protein product Approved 7p22.3 07p22.3 Uncx4.1 PRD class homeoboxes and pseudogenes 521 2007-08-09 2014-11-19 340260 ENSG00000164853 OTTHUMG00000152022 uc011jvw.3 NM_001080461 CCDS34583 A6NJT0 MGI:108013 RGD:69361 UNCX 8617 +HGNC:12572 UNG uracil DNA glycosylase protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "UDG|UNG1|UNG2|HIGM4" uracil-DNA glycosylase 1, uracil-DNA glycosylase 2 DGU DNA glycosylases 1024 1990-02-22 2015-06-23 2016-10-12 7374 ENSG00000076248 OTTHUMG00000169247 uc001tnz.3 A64377 NM_080911 "CCDS9124|CCDS9125" P13051 "1923798|17101234" MGI:109352 RGD:1307200 "UNGbase: Mutation registry for UNG deficiency (Hyper-IgM syndrome, type 5)|http://structure.bmc.lu.se/idbase/UNGbase/|LRG_124|http://www.lrg-sequence.org/LRG/LRG_124" UNG 191525 120421 3.2.2.27 +HGNC:18579 UNGP1 uracil-DNA glycosylase pseudogene 1 pseudogene pseudogene Approved 16q12.1 16q12.1 2002-04-26 2008-05-14 57004 ENSG00000260818 OTTHUMG00000176689 X92985 NG_001287 8694824 +HGNC:18580 UNGP2 uracil-DNA glycosylase pseudogene 2 pseudogene pseudogene Approved 14q12-q21 14q12-q21 2002-04-26 2008-05-14 57005 X92986 NG_001288 8694824 +HGNC:20036 UNGP3 uracil-DNA glycosylase pseudogene 3 pseudogene pseudogene Approved 14q31.1 14q31.1 2003-01-13 2014-11-19 319122 ENSG00000270343 OTTHUMG00000184395 NG_002503 PGOHUM00000247873 +HGNC:29369 UNK unkempt family zinc finger protein-coding gene gene with protein product Approved 17q25.3 17q25.3 KIAA1753 "ZC3HDC5|ZC3H5" "zinc finger CCCH-type domain containing 5|zinc finger CCCH-type containing 5|unkempt homolog (Drosophila)" Zinc fingers CCCH-type 73 2004-02-27 2007-02-06 2013-10-17 2016-04-25 85451 ENSG00000132478 OTTHUMG00000179892 uc021udd.3 AB051540 NM_001080419 CCDS45778 Q9C0B0 11214970 MGI:2442456 RGD:1309224 UNK 616375 +HGNC:14184 UNKL unkempt family like zinc finger protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "ZC3HDC5L|ZC3H5L|FLJ23360" C16orf28 "chromosome 16 open reading frame 28|unkempt homolog (Drosophila)-like|unkempt family zinc finger-like" Zinc fingers CCCH-type 73 2000-12-21 2016-02-12 2016-02-12 64718 ENSG00000059145 OTTHUMG00000128553 uc059owu.1 BC011924 NM_001037125 "CCDS32359|CCDS53980|CCDS61787" Q9H9P5 20148946 MGI:1921404 RGD:1565247 UNKL +HGNC:12575 UOX urate oxidase (pseudogene) pseudogene pseudogene Approved 1p31.1 01p31.1 UOXP urate oxidase 1991-06-06 2016-01-06 2016-01-06 391051 ENSG00000240520 OTTHUMG00000009861 AB074093 NR_003927 "1395718|1556746" MGI:98907 191540 +HGNC:16297 UPB1 beta-ureidopropionase 1 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 BUP1 ureidopropionase, beta 2001-10-03 2016-05-16 2016-10-05 51733 ENSG00000100024 OTTHUMG00000150749 uc003aaf.4 AB013885 XM_011530222 CCDS13827 Q9UBR1 10542323 MGI:2143535 RGD:620091 UPB1 606673 120426 +HGNC:9962 UPF1 UPF1, RNA helicase and ATPase protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "HUPF1|KIAA0221|NORF1|pNORF1|smg-2" "UP Frameshift 1|smg-2 homolog, nonsense mediated mRNA decay factor (C. elegans)" RENT1 "regulator of nonsense transcripts 1|UPF1 regulator of nonsense transcripts homolog (yeast)" UPF1 like RNA helicases 1169 1997-02-11 2006-02-07 2016-03-14 2016-03-14 5976 ENSG00000005007 OTTHUMG00000183025 uc002nkf.4 AF074016 NM_002911 "CCDS12386|CCDS74315" Q92900 "8855285|9064659" MGI:107995 RGD:1589127 UPF1 601430 +HGNC:17854 UPF2 UPF2 regulator of nonsense transcripts homolog (yeast) protein-coding gene gene with protein product Approved 10p14 10p14 "RENT2|DKFZP434D222|KIAA1408|smg-3" smg-3 homolog, nonsense mediated mRNA decay factor (C. elegans) 2003-02-07 2016-10-05 26019 ENSG00000151461 OTTHUMG00000017678 uc001ilc.4 AB037829 XM_017016034 CCDS7086 Q9HAU5 "11073994|11113196" MGI:2449307 RGD:1309178 UPF2 605529 +HGNC:20332 UPF3A UPF3 regulator of nonsense transcripts homolog A (yeast) protein-coding gene gene with protein product Approved 13q34 13q34 "RENT3A|UPF3|HUPF3A" 2003-02-07 2014-11-19 65110 ENSG00000169062 OTTHUMG00000017403 uc001vup.4 AF318575 XM_006719991 "CCDS9543|CCDS9544" Q9H1J1 "11113196|11163187" MGI:1914281 RGD:1308778 UPF3A 605530 +HGNC:30568 UPF3AP1 UPF3A pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 1 2010-04-30 2013-09-13 2015-03-06 147226 ENSG00000226478 OTTHUMG00000059169 NG_001548 11997339 PGOHUM00000293968 +HGNC:30567 UPF3AP2 UPF3A pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 2 2010-04-30 2013-09-13 2015-03-06 147150 ENSG00000214832 OTTHUMG00000059514 NG_001546 11997339 PGOHUM00000293986 +HGNC:38395 UPF3AP3 UPF3A pseudogene 3 pseudogene pseudogene Approved 9q31.1 09q31.1 UPF3 regulator of nonsense transcripts homolog A (yeast) pseudogene 3 2010-04-30 2013-09-13 2015-03-06 100422343 ENSG00000234709 OTTHUMG00000020360 NG_021629 PGOHUM00000304006 +HGNC:20439 UPF3B UPF3 regulator of nonsense transcripts homolog B (yeast) protein-coding gene gene with protein product Approved Xq24 Xq24 "RENT3B|UPF3X|HUPF3B" "MRX62|UPF3BP1|UPF3BP2|UPF3BP3" "mental retardation, X-linked 62|UPF3B pseudogene 1|UPF3B pseudogene 2|UPF3B pseudogene 3" X-linked mental retardation 103 2003-02-07 2016-02-04 65109 ENSG00000125351 OTTHUMG00000022282 uc004erz.3 AF318576 NM_080632 "CCDS14587|CCDS14588" Q9BZI7 "11113196|11163187|19238151" MGI:1915384 RGD:1560264 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=UPF3B UPF3B 300298 159373 +HGNC:51566 UPF3BP4 UPF3B pseudogene 4 pseudogene pseudogene Approved Xq24 Xq24 2015-03-06 2015-03-06 107080630 ENSG00000277555 OTTHUMG00000188076 NG_046392 +HGNC:12577 UPK1A uroplakin 1A protein-coding gene gene with protein product Approved 19q13.12 19q13.12 TSPAN21 Tetraspanins 768 1999-08-26 2016-10-05 11045 ENSG00000105668 OTTHUMG00000048115 uc002oaw.5 AF085807 XM_017026225 "CCDS12470|CCDS62640" O00322 "9846985|10404304" MGI:98911 RGD:1309849 UPK1A 611557 +HGNC:40603 UPK1A-AS1 UPK1A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 UPK1A antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100862728 ENSG00000226510 OTTHUMG00000048113 uc002oax.2 BC007817 NR_046420 +HGNC:12578 UPK1B uroplakin 1B protein-coding gene gene with protein product Approved 3q13.32 03q13.32 TSPAN20 UPK1 Tetraspanins 768 1992-07-31 2015-08-26 7348 ENSG00000114638 OTTHUMG00000159354 uc003ecc.4 AF082888 NM_006952 CCDS2985 O75841 "9935153|9846985" MGI:98912 RGD:1307806 UPK1B 602380 +HGNC:12579 UPK2 uroplakin 2 protein-coding gene gene with protein product Approved 11q23 11q23 "UP2|UPII|MGC138598" "uroplakin II|uroplakin-2" 1992-07-31 2014-11-19 7379 ENSG00000110375 OTTHUMG00000166346 uc001puh.4 Y13645 NM_006760 CCDS8404 O00526 "9515818|9846985" MGI:98913 RGD:1597393 UPK2 611558 +HGNC:12580 UPK3A uroplakin 3A protein-coding gene gene with protein product Approved 22q13.31 22q13.31 UPK3 uroplakin 3 1992-07-31 2003-07-30 2003-07-29 2014-11-18 7380 ENSG00000100373 OTTHUMG00000151339 uc003bfy.4 AB010637 NM_006953 "CCDS14064|CCDS54539" O75631 9818021 MGI:98914 RGD:1310633 UPK3A 611559 268073 +HGNC:21444 UPK3B uroplakin 3B protein-coding gene gene with protein product Approved 7q11.2 07q11.2 "MGC10902|p35|UPIIIb|FLJ32198" uroplakin IIIb 2003-07-29 2015-09-03 80761 ENSG00000243566 OTTHUMG00000149929 uc064eqa.1 BC004304 NM_030570 Q9BT76 12446744 MGI:2140882 RGD:1309615 UPK3B 611887 +HGNC:37278 UPK3BL uroplakin 3B-like protein-coding gene gene with protein product Approved 7q22.1 07q22.1 UPLP uroplakin-like protein 2010-03-03 2010-03-03 2015-08-26 100134938 ENSG00000267368 OTTHUMG00000165036 uc010lij.3 EU341824 NM_001114403 CCDS47675 B0FP48 MGI:1916915 RGD:1598237 UPK3BL +HGNC:42353 UPK3BP1 uroplakin 3B pseudogene 1 pseudogene pseudogene Approved 7q11.23 07q11.23 2011-06-29 2011-07-04 107080637 ENSG00000242435 OTTHUMG00000155728 NG_046687 PGOHUM00000250954 +HGNC:12576 UPP1 uridine phosphorylase 1 protein-coding gene gene with protein product Approved 7p12.3 07p12.3 "UPASE|UPP|UDRPASE" UP uridine phosphorylase 2001-06-22 2003-08-29 2003-08-28 2014-11-19 7378 ENSG00000183696 OTTHUMG00000129253 uc003tok.5 AK096167 NM_003364 CCDS5507 Q16831 "752472|11807789" MGI:1097668 RGD:1305566 UPP1 191730 2.4.2.3 +HGNC:23061 UPP2 uridine phosphorylase 2 protein-coding gene gene with protein product Approved 2q24.1 02q24.1 "UPASE2|UP2|UDRPASE2" 2003-09-01 2016-10-05 151531 ENSG00000007001 OTTHUMG00000131969 uc002tzp.4 AY225131 NM_173355 "CCDS2207|CCDS46435" O95045 12849978 MGI:1923904 RGD:1308188 UPP2 2.4.2.3 +HGNC:41467 UPP2-IT1 UPP2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q24.1 02q24.1 UPP2 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874283 ENSG00000237327 OTTHUMG00000153915 uc061ouf.1 +HGNC:28334 UPRT uracil phosphoribosyltransferase homolog protein-coding gene gene with protein product Approved Xq13.3 Xq13.3 "DKFZp781E1243|MGC23937|FUR1|RP11-311P8.3" uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae) 2006-12-07 2015-11-18 2015-11-18 139596 ENSG00000094841 OTTHUMG00000021864 uc004ecb.3 BC015116 NM_145052 "CCDS14429|CCDS78494" Q96BW1 26271729 MGI:2685620 RGD:1564806 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=UPRT UPRT 300656 +HGNC:15891 UQCC1 ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 "FLJ10850|CBP3|BFZB" "Basic FGF-repressed Zic-binding protein|cytochrome B protein synthesis 3 homolog (S. cerevisiae)" "C20orf44|UQCC" "chromosome 20 open reading frame 44|ubiquinol-cytochrome c reductase complex chaperone" Mitochondrial respiratory chain complex assembly factors 645 2001-06-21 2013-09-20 2013-09-20 2016-04-25 55245 ENSG00000101019 OTTHUMG00000032335 AK001712 NM_018244 "CCDS13252|CCDS13253|CCDS54458" Q9NVA1 MGI:1929472 RGD:1585681 611797 +HGNC:21237 UQCC2 ubiquinol-cytochrome c reductase complex assembly factor 2 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "MGC14833|bA6B20.2|M19|Cbp6" cytochrome B protein synthesis 6 homolog (S. cerevisiae) "C6orf125|MNF1" "chromosome 6 open reading frame 125|mitochondrial nucleoid factor 1" Mitochondrial respiratory chain complex assembly factors 645 2003-05-29 2013-09-20 2013-09-20 2014-11-19 84300 ENSG00000137288 OTTHUMG00000014534 NM_032340 CCDS4784 Q9BRT2 19643811 MGI:1914517 RGD:1306917 614461 394920 +HGNC:34399 UQCC3 ubiquinol-cytochrome c reductase complex assembly factor 3 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 UNQ655 C11orf83 chromosome 11 open reading frame 83 Mitochondrial respiratory chain complex assembly factors 645 2008-07-18 2014-07-24 2014-07-24 2015-01-27 790955 ENSG00000204922 "AY358935|BC090057" NM_001085372 CCDS41658 Q6UW78 "12975309|25008109|25605331" MGI:2147553 RGD:1597344 616097 414565 +HGNC:30863 UQCR10 ubiquinol-cytochrome c reductase, complex III subunit X protein-coding gene gene with protein product Approved 22q12.2 22q12.2 "HSPC051|UCRC|QCR9|UCCR7.2" "ubiquinol-cytochrome c reductase, complex III subunit X, 7.2kDa|complex III subunit 9" Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 2010-01-26 2014-11-19 29796 ENSG00000184076 OTTHUMG00000151283 uc003agq.1 AB028598 NM_013387 "CCDS46680|CCDS46681" Q9UDW1 11042152 MGI:1913402 RGD:1595126 UQCR10 610843 +HGNC:30862 UQCR11 ubiquinol-cytochrome c reductase, complex III subunit XI protein-coding gene gene with protein product Approved 19p13.3 19p13.3 QCR10 complex III subunit 10 UQCR ubiquinol-cytochrome c reductase, 6.4kDa subunit Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 2005-01-10 2010-01-26 2010-01-26 2014-11-18 10975 ENSG00000127540 OTTHUMG00000180084 uc002ltm.4 D55636 NM_006830 CCDS12073 O14957 9161705 MGI:1913844 RGD:1590985 UQCR11 609711 +HGNC:12582 UQCRB ubiquinol-cytochrome c reductase binding protein protein-coding gene gene with protein product Approved 8q22.1 08q22.1 "QP-C|QCR7|UQCR6" "ubiquinol-cytochrome c reductase, complex III subunit VI|cytochrome b-c1 complex subunit 7" UQBP Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 1991-08-20 2016-10-05 7381 ENSG00000156467 OTTHUMG00000164711 uc003yhq.5 X13585 NM_006294 "CCDS6269|CCDS59107" P14927 "2167087|2543413|3056408" MGI:1914780 RGD:1311971 UQCRB 191330 166726 +HGNC:12583 UQCRBP1 ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudogene pseudogene Approved Xp11.21 Xp11.21 1993-07-16 2014-11-19 442454 ENSG00000237748 OTTHUMG00000021675 NR_002308 2543413 UQCRBP1 PGOHUM00000241342 +HGNC:12584 UQCRBP2 ubiquinol-cytochrome c reductase binding protein pseudogene 2 pseudogene pseudogene Approved 1q23.3 01q23.3 1993-07-16 2014-11-19 100130719 ENSG00000227941 OTTHUMG00000034418 NG_027838 2543413 PGOHUM00000256868 +HGNC:39033 UQCRBP3 ubiquinol-cytochrome c reductase binding protein pseudogene 3 pseudogene pseudogene Approved 5p15.2 05p15.2 2010-09-24 2014-11-19 100288785 ENSG00000249928 OTTHUMG00000161815 NG_028711 PGOHUM00000235128 +HGNC:12585 UQCRC1 ubiquinol-cytochrome c reductase core protein I protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "D3S3191|QCR1|UQCR1" Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 1993-07-09 2016-10-05 7384 ENSG00000010256 OTTHUMG00000133539 uc003cub.2 BC009586 NM_003365 CCDS2774 P31930 8407948 MGI:107876 RGD:1303314 UQCRC1 191328 M16.973 1.10.2.2 +HGNC:12586 UQCRC2 ubiquinol-cytochrome c reductase core protein II protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "QCR2|UQCR2" Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 1993-07-09 2016-10-05 7385 ENSG00000140740 OTTHUMG00000131585 uc002djx.4 J04973 NM_003366 CCDS10601 P22695 "8288258|2547763" MGI:1914253 RGD:1359150 UQCRC2 191329 328770 M16.974 1.10.2.2 +HGNC:44309 UQCRC2P1 ubiquinol-cytochrome c reductase core protein II pseudogene 1 pseudogene pseudogene Approved 3p21.31 03p21.31 2012-08-09 2012-08-09 100131327 ENSG00000236736 OTTHUMG00000156315 NG_022204 PGOHUM00000237612 +HGNC:12587 UQCRFS1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding gene gene with protein product Approved 19q12 19q12 "RIS1|RIP1|UQCR5|RISP" cytochrome b-c1 complex subunit 5 Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 1993-09-20 2014-11-19 7386 ENSG00000169021 OTTHUMG00000181997 uc002nsd.3 BC010035 NM_006003 CCDS12415 P47985 8088805 MGI:1913944 RGD:628838 UQCRFS1 191327 1.10.2.2 +HGNC:12588 UQCRFS1P1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 1 pseudogene pseudogene Approved 22q13.1 22q13.1 UQCRFSL1 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide-like 1 1994-12-16 2010-10-28 2010-10-28 2014-11-19 100128525 ENSG00000226085 OTTHUMG00000151103 NG_009458 P0C7P4 8088805 +HGNC:39172 UQCRFS1P2 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 2 pseudogene pseudogene Approved 7q34 07q34 2010-10-28 2010-10-28 647123 ENSG00000223721 OTTHUMG00000155872 NG_009734 PGOHUM00000233591 +HGNC:39173 UQCRFS1P3 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 3 pseudogene pseudogene Approved 6p22.3 06p22.3 2010-10-28 2010-10-28 100130994 ENSG00000217314 OTTHUMG00000014328 NG_022295 PGOHUM00000243071 +HGNC:12589 UQCRFSL2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12590 UQCRH ubiquinol-cytochrome c reductase hinge protein protein-coding gene gene with protein product Approved 1p33 01p33 "QCR6|UQCR8" ubiquinol-cytochrome c reductase, complex III subunit VIII Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 1993-07-09 2016-10-05 7388 ENSG00000173660 OTTHUMG00000007813 uc001cpp.4 BC001934 NM_006004 CCDS30704 P07919 2826252 MGI:1913826 RGD:1305987 UQCRH 613844 1.10.2.2 +HGNC:51714 UQCRHL ubiquinol-cytochrome c reductase hinge protein like protein-coding gene gene with protein product Approved 1p36.21 01p36.21 2015-06-12 2015-09-03 440567 ENSG00000233954 OTTHUMG00000003109 NM_001089591 CCDS76112 A0A096LP55 MGI:1913826 +HGNC:31341 UQCRHP1 ubiquinol-cytochrome c reductase hinge protein pseudogene 1 pseudogene pseudogene Approved 6p21.33 06p21.33 Em:AF129756.18 UQCRHP5 ubiquinol-cytochrome c reductase hinge protein pseudogene 5 2004-03-02 2014-11-19 100130756 ENSG00000230622 OTTHUMG00000031291 NG_023011 PGOHUM00000243144 +HGNC:38045 UQCRHP2 ubiquinol-cytochrome c reductase hinge protein pseudogene 2 pseudogene pseudogene Approved 2p23.3 02p23.3 2010-03-30 2014-11-19 729769 ENSG00000237629 OTTHUMG00000151934 NG_023004 PGOHUM00000240602 +HGNC:38046 UQCRHP3 ubiquinol-cytochrome c reductase hinge protein pseudogene 3 pseudogene pseudogene Approved 10q11.21 10q11.21 2010-03-30 2014-11-19 100131995 ENSG00000224162 OTTHUMG00000018046 NG_022997 PGOHUM00000238757 +HGNC:38047 UQCRHP4 ubiquinol-cytochrome c reductase hinge protein pseudogene 4 pseudogene pseudogene Approved 3p13 03p13 2010-03-30 2014-11-19 100128448 ENSG00000242728 OTTHUMG00000158799 NG_023010 PGOHUM00000238056 +HGNC:29594 UQCRQ ubiquinol-cytochrome c reductase complex III subunit VII protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "QP-C|QCR8|UQCR7" "ubiquinol-cytochrome c reductase, complex III subunit VII|complex III subunit 8" ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kDa Mitochondrial complex III: ubiquinol-cytochrome c reductase complex subunits 642 2005-12-01 2015-11-09 2015-11-09 27089 ENSG00000164405 OTTHUMG00000059836 uc003kya.2 BC001390 NM_014402 CCDS34237 O14949 "15544925|12709789|2164842" MGI:107807 RGD:1562350 UQCRQ 612080 159955 1.10.2.2 +HGNC:17785 URAD ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase protein-coding gene gene with protein product Approved 13q12.2 13q12.2 OHCU decarboxylase PRHOXNB parahox cluster neighbor 2005-09-06 2013-06-18 2013-06-18 2016-09-26 646625 ENSG00000183463 OTTHUMG00000186217 NM_001105577 CCDS45020 A6NGE7 16462750 MGI:3647519 RGD:1595191 615804 4.1.1.n1 +HGNC:43695 URAHP urate (hydroxyiso-) hydrolase, pseudogene pseudogene pseudogene Approved 16q24.3 16q24.3 URAH HIU hydrolase 2013-06-18 2013-06-18 100130015 ENSG00000222019 OTTHUMG00000154575 NR_027336 20106906 MGI:1916142 615805 3.5.2.17 +HGNC:17344 URB1 URB1 ribosome biogenesis 1 homolog (S. cerevisiae) protein-coding gene gene with protein product Approved 21q22.11 21q22.11 "KIAA0539|NPA1" C21orf108 chromosome 21 open reading frame 108 2001-12-11 2006-11-28 2006-11-28 2015-08-26 9875 ENSG00000142207 OTTHUMG00000064919 uc002ypn.3 AB011111 NM_014825 CCDS46645 O60287 9628581 MGI:2146468 RGD:1304621 URB1 608865 +HGNC:23128 URB1-AS1 URB1 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 21q22.11 21q22.11 "PRED84|MGC14136" C21orf119 chromosome 21 open reading frame 119 2003-10-01 2014-10-01 2014-10-01 2014-11-19 84996 ENSG00000256073 OTTHUMG00000064921 BC007928 NR_026845 Q96HZ7 +HGNC:28967 URB2 URB2 ribosome biogenesis 2 homolog (S. cerevisiae) protein-coding gene gene with protein product Approved 1q42.13 01q42.13 "NPA2|NET10" nucleolar preribosomal-associated protein 1 KIAA0133 KIAA0133 2004-11-08 2008-10-01 2008-10-01 2014-11-19 9816 ENSG00000135763 OTTHUMG00000039464 uc001hts.1 D50923 NM_014777 CCDS31052 Q14146 8590280 MGI:2681124 RGD:1307980 URB2 +HGNC:30890 URGCP upregulator of cell proliferation protein-coding gene gene with protein product Approved 7p13 07p13 "URG4|KIAA1507|FLJ20654|DKFZp666G166|DKFZp686O0457" up-regulated gene 4 2009-12-15 2014-11-19 55665 ENSG00000106608 OTTHUMG00000155245 uc003tiy.4 NM_001077664 "CCDS43572|CCDS47577|CCDS47578" Q8TCY9 "10819331|12082552" MGI:1919296 RGD:1564681 URGCP 610337 +HGNC:49188 URGCP-MRPS24 URGCP-MRPS24 readthrough other readthrough Approved 7p13 07p13 2013-09-25 2013-09-25 100534592 ENSG00000270617 OTTHUMG00000185136 NM_001204871 CCDS64632 +HGNC:13236 URI1 URI1, prefoldin like chaperone protein-coding gene gene with protein product Approved 19q12 19q12 "RMP|NNX3|FLJ10575|URI|PPP1R19" "unconventional prefoldin RPB5 interactor|RPB5-mediating protein|protein phosphatase 1, regulatory subunit 19" C19orf2 chromosome 19 open reading frame 2 "Protein phosphatase 1 regulatory subunits|Prefoldin subunits" "694|956" 2002-09-13 2011-11-21 2016-06-07 2016-07-25 8725 ENSG00000105176 OTTHUMG00000177923 uc002nsr.4 AF091095 NM_134447 "CCDS12420|CCDS58658" O94763 "9878255|9819440" MGI:1342294 RGD:1310358 603494 +HGNC:28378 URM1 ubiquitin related modifier 1 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 MGC2668 C9orf74 "chromosome 9 open reading frame 74|ubiquitin related modifier 1 homolog (S. cerevisiae)" 2004-01-06 2006-11-28 2010-06-24 2016-10-05 81605 ENSG00000167118 OTTHUMG00000020742 uc004buv.3 AK097029 NM_030914 "CCDS6900|CCDS48035|CCDS59148" Q9BTM9 "16046629|16864801|25747390" MGI:1915455 RGD:1306599 URM1 612693 +HGNC:26444 UROC1 urocanate hydratase 1 protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "FLJ31300|HMFN0320" urocanase 1 urocanase domain containing 1 2005-02-07 2012-08-21 2016-10-05 131669 ENSG00000159650 OTTHUMG00000162753 uc003eiz.3 AK055862 NM_144639 "CCDS3038|CCDS54636" Q96N76 19304569 MGI:2385332 RGD:1587777 UROC1 613012 212917 4.2.1.49 +HGNC:12591 UROD uroporphyrinogen decarboxylase protein-coding gene gene with protein product Approved 1p34.1 01p34.1 2001-06-22 2016-10-12 7389 ENSG00000126088 OTTHUMG00000008949 uc001cna.3 BC001778 NM_000374 CCDS518 P06132 "3015909|3460962" MGI:98916 RGD:3946 LRG_1079|http://www.lrg-sequence.org/LRG/LRG_1079 UROD 613521 120429 4.1.1.37 +HGNC:12592 UROS uroporphyrinogen III synthase protein-coding gene gene with protein product Approved 10q26.2 10q26.2 congenital erythropoietic porphyria 1991-09-13 2008-07-31 2016-10-12 7390 ENSG00000188690 OTTHUMG00000019236 uc001lix.5 J03824 NM_000375 "CCDS7648|CCDS81522" P10746 2037278 MGI:98917 RGD:1310396 LRG_1081|http://www.lrg-sequence.org/LRG/LRG_1081 UROS 606938 120431 4.2.1.75 +HGNC:25792 USB1 U6 snRNA biogenesis phosphodiesterase 1 protein-coding gene gene with protein product Approved 16q21 16q21 "FLJ13154|HVSL1|Mpn1" "HVSL motif containing 1|poikiloderma with neutropenia|U six biogenesis 1|mutated in poikiloderma with neutropenia protein 1" C16orf57 "chromosome 16 open reading frame 57|U6 snRNA biogenesis 1" 2006-02-17 2012-08-21 2016-03-31 2016-10-12 79650 ENSG00000103005 OTTHUMG00000133456 uc002emz.4 AK023216 NM_024598 "CCDS10791|CCDS55997|CCDS55998|CCDS81990|CCDS81991" Q9BQ65 "20004881|20503306|22899009|23022480" MGI:2142454 RGD:1305215 LRG_352|http://www.lrg-sequence.org/LRG/LRG_352 613276 225243 3.1.4. +HGNC:30882 USE1 unconventional SNARE in the ER 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "p31|SLT1|MDS032|D12" "Q-SNARE|SNARE-like tail-anchored protein 1 homolog (S. cerevisiae)" unconventional SNARE in the ER 1 homolog (S. cerevisiae) SNAREs 1124 2007-08-20 2016-03-14 2016-03-14 55850 ENSG00000053501 OTTHUMG00000182723 uc002nfo.3 AF220052 NM_018467 CCDS46011 Q9NZ43 "16354670|15029241" MGI:1914273 RGD:1306660 USE1 610675 +HGNC:12593 USF1 upstream transcription factor 1 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 "UEF|MLTFI|bHLHb11" Basic helix-loop-helix proteins 420 1992-12-10 2016-10-05 7391 ENSG00000158773 OTTHUMG00000031472 uc001fxi.5 BC035505 NM_007122 CCDS1214 P22415 8486371 MGI:99542 RGD:620974 USF1 191523 +HGNC:23773 USF1P1 upstream transcription factor 1 pseudogene 1 pseudogene pseudogene Approved 21q22.11 21q22.11 USF1P upstream transcription factor 1 pseudogene 2008-01-31 2010-02-26 2010-02-26 2014-11-19 100151645 ENSG00000226501 OTTHUMG00000065124 NG_007657 PGOHUM00000239166 +HGNC:12594 USF2 upstream transcription factor 2, c-fos interacting protein-coding gene gene with protein product Approved 19q13 19q13 "FIP|bHLHb12" Basic helix-loop-helix proteins 420 1994-10-25 2014-11-19 7392 ENSG00000105698 OTTHUMG00000183182 uc002nyq.2 AY007087 NM_003367 "CCDS12452|CCDS12453|CCDS82329" Q15853 8954795 MGI:99961 RGD:620975 USF2 600390 +HGNC:30494 USF3 upstream transcription factor family member 3 protein-coding gene gene with protein product Approved 3q13.2 03q13.2 KIAA2018 KIAA2018 2005-03-02 2015-10-08 2015-10-08 2015-10-08 205717 ENSG00000176542 OTTHUMG00000159322 AB095938 NM_001009899 CCDS43133 Q68DE3 MGI:2685454 RGD:1560175 +HGNC:12595 USH1A entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-01-28 +HGNC:12597 USH1C USH1 protein network component harmonin protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "PDZ73|harmonin|NY-CO-37|NY-CO-38|PDZ-73|AIE-75|PDZD7C" harmonin DFNB18 "deafness, autosomal recessive 18|Usher syndrome 1C (autosomal recessive, severe)|Usher syndrome 1C" PDZ domain containing 1220 1992-06-08 2016-02-16 2016-10-05 10083 ENSG00000006611 OTTHUMG00000166323 uc001mne.4 AB006955 NM_005709 "CCDS7825|CCDS31438|CCDS73265" Q9Y6N9 "10973247|12107438" MGI:1919338 RGD:1303329 "Mutations of the Harmonin Gene|http://www.retina-international.org/files/sci-news/ush1cmut.htm|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=USH1C" USH1C 605242 120433 +HGNC:12599 USH1E Usher syndrome 1E (autosomal recessive, severe) phenotype phenotype only Approved 21q21 21q21 1997-01-28 1997-01-28 7396 9002666 602097 139795 +HGNC:16356 USH1G USH1 protein network component sans protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "Sans|FLJ33924|ANKS4A" Usher syndrome 1G (autosomal recessive) "Ankyrin repeat domain containing|Sterile alpha motif domain containing" "403|760" 2001-12-07 2016-02-17 2016-02-17 124590 ENSG00000182040 OTTHUMG00000178864 uc032fra.2 AK091243 NM_173477 CCDS32725 Q495M9 12588794 MGI:2450757 RGD:1304551 CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=USH1G USH1G 607696 120442 +HGNC:22433 USH1H Usher syndrome 1H (autosomal recessive) phenotype phenotype only Approved 15q22-q23 15q22-q23 2008-12-08 2008-12-08 100271837 18505454 612632 316325 +HGNC:43724 USH1K Usher syndrome 1K (autosomal recessive) phenotype phenotype only Approved 10p11.21-q21.1 10p11.21-q21.1 2012-02-07 2013-07-23 101180907 22718019 614990 322975 +HGNC:12601 USH2A usherin protein-coding gene gene with protein product Approved 1q41 01q41 RP39 USH2 Usher syndrome 2A (autosomal recessive, mild) "Fibronectin type III domain containing|USH2 complex " "555|1244" 1990-03-06 2016-05-25 2016-05-25 7399 ENSG00000042781 OTTHUMG00000037079 uc001hku.1 AF055580 NM_007123 "CCDS1516|CCDS31025" O75445 "9624053|10729113" MGI:1341292 RGD:628777 "Mutations of the USH2a Gene|http://www.retina-international.org/files/sci-news/ush2amut.htm|CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=USH2A" USH2A 608400 120447 +HGNC:12602 USH2B entry withdrawn withdrawn withdrawn Entry Withdrawn 2010-03-25 +HGNC:12606 USH3B Usher syndrome 3B phenotype phenotype only Approved reserved reserved 1998-10-23 2002-04-15 23662 +HGNC:24058 USHBP1 USH1 protein network component harmonin binding protein 1 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "MCC2|AIEBP|FLJ38709" Usher syndrome 1C binding protein 1 2004-03-17 2016-03-14 2016-03-14 83878 ENSG00000130307 OTTHUMG00000182730 uc002nfs.2 AK096028 NM_031941 "CCDS12353|CCDS77256" Q8N6Y0 11311560 MGI:1922920 RGD:1310859 USHBP1 611810 +HGNC:30889 USMG5 up-regulated during skeletal muscle growth 5 homolog (mouse) protein-coding gene gene with protein product Approved 10q24.33 10q24.33 "MGC14697|bA792D24.4|DAPIT" Diabetes Associated Protein in Insulin-sensitive Tissues "upregulated during skeletal muscle growth 5|upregulated during skeletal muscle growth 5 homolog (mouse)" 2004-02-17 2008-06-05 2016-02-12 84833 ENSG00000173915 OTTHUMG00000018984 uc001kww.4 BC007087 NM_032747 CCDS7548 Q96IX5 "17570365|17575325|22688299" MGI:1891435 RGD:631426 USMG5 615204 +HGNC:31716 USMG5P1 USMG5 pseudogene 1 pseudogene pseudogene Approved Xq13.2 Xq13.2 up-regulated during skeletal muscle growth 5 homolog (mouse) pseudogene 1 2005-10-06 2013-09-12 2014-11-19 100288307 ENSG00000231549 OTTHUMG00000021847 NG_012722 USMG5P1 PGOHUM00000241853 +HGNC:30904 USO1 USO1 vesicle transport factor protein-coding gene gene with protein product Approved 4q21.1 04q21.1 "TAP|VDP|p115" "vesicle docking protein|transcytosis associated protein" "USO1 homolog, vesicle docking protein (yeast)|USO1 vesicle docking protein homolog (yeast)" 2007-08-20 2012-12-10 2012-12-10 8615 ENSG00000138768 OTTHUMG00000160952 uc032tmk.2 AL832010 NM_003715 "CCDS75144|CCDS77929" O60763 "9478999|9150144|12077354|15979508|14736916" MGI:1929095 RGD:621604 USO1 603344 +HGNC:12607 USP1 ubiquitin specific peptidase 1 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 ubiquitin specific protease 1 Ubiquitin specific peptidases 366 1998-06-08 2005-08-08 2014-11-19 7398 ENSG00000162607 OTTHUMG00000008972 uc001daj.3 NM_001017415 CCDS621 O94782 12838346 MGI:2385198 RGD:1306461 USP1 603478 C19.019 objectId:2428 +HGNC:12618 USP2 ubiquitin specific peptidase 2 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 UBP41 ubiquitin specific protease 2 Ubiquitin specific peptidases 366 1999-07-09 2005-08-08 2015-08-26 9099 ENSG00000036672 OTTHUMG00000166200 uc001pwm.5 AF079564 NM_171997 "CCDS8422|CCDS8423|CCDS58189" O75604 12838346 MGI:1858178 RGD:621073 USP2 604725 C19.013 objectId:2430 +HGNC:48673 USP2-AS1 USP2 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 11q23.3 11q23.3 THY1-AS1 2013-06-06 2013-06-06 100499227 ENSG00000245248 OTTHUMG00000166173 NR_034160 +HGNC:12626 USP3 ubiquitin specific peptidase 3 protein-coding gene gene with protein product Approved 15q22.3 15q22.3 ubiquitin specific protease 3 Ubiquitin specific peptidases 366 1999-07-09 2005-08-08 2014-11-18 9960 ENSG00000140455 OTTHUMG00000172309 uc002amf.5 AF073344 XM_017022763 "CCDS32265|CCDS58370" Q9Y6I4 12838346 MGI:2152450 RGD:1308852 USP3 604728 C19.026 +HGNC:44140 USP3-AS1 USP3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 15q22.31 15q22.31 2013-05-24 2013-05-24 100130855 ENSG00000259248 OTTHUMG00000172432 AK093077 NR_034080 +HGNC:12627 USP4 ubiquitin specific peptidase 4 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 Unph UNP ubiquitin specific peptidase 4 (proto-oncogene) Ubiquitin specific peptidases 366 1998-05-29 2016-04-06 2016-10-05 7375 ENSG00000114316 OTTHUMG00000156825 uc003cwq.3 U20657 NM_199443 "CCDS2793|CCDS2794|CCDS58832" Q13107 "12838346|9464533" MGI:98905 RGD:1587387 USP4 603486 C19.010 +HGNC:12628 USP5 ubiquitin specific peptidase 5 protein-coding gene gene with protein product Approved 12p13 12p13 IsoT isopeptidase T ubiquitin specific peptidase 5 (isopeptidase T) Ubiquitin specific peptidases 366 1999-02-01 2016-04-06 2016-04-06 8078 ENSG00000111667 OTTHUMG00000169233 uc001qrh.5 U35116 XR_001748873 "CCDS31733|CCDS41743" P45974 "12838346|8723724" MGI:1347343 RGD:1308438 USP5 601447 C19.001 objectId:2431 +HGNC:12629 USP6 ubiquitin specific peptidase 6 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "Tre-2|TRE17|Tre2" "ubiquitin carboxyl-terminal hydrolase 6|TBC1D3 and USP32 fusion|Tre-2 oncogene" "HRP1|TRESMCR" "ubiquitin specific protease 6 (Tre-2 oncogene)|TRE oncogene, Smith Magenis syndrome chromosome region|ubiquitin specific peptidase 6 (Tre-2 oncogene)" Ubiquitin specific peptidases 366 1999-02-01 2014-06-12 2016-10-05 9098 ENSG00000129204 OTTHUMG00000099449 uc002gau.2 X63547 NM_004505 CCDS11069 P35125 "12838346|1349106" USP6 604334 C19.009 3.4.19.12 +HGNC:16858 USP6NL USP6 N-terminal like protein-coding gene gene with protein product Approved 10p14 10p14 "RNTRE|KIAA0019|TRE2NL|RN-tre" related to the N terminus of tre USP6NL-IT1 USP6NL intronic transcript 1 (non-protein coding) 2003-11-06 2016-10-05 9712 ENSG00000148429 OTTHUMG00000017672 uc001iks.1 BC010351 NM_014688 "CCDS44357|CCDS53492" Q92738 "8700515|8700527|12399475" MGI:2138893 RGD:1311786 USP6NL 605405 +HGNC:12630 USP7 ubiquitin specific peptidase 7 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 HAUSP ubiquitin specific peptidase 7 (herpes virus-associated) Ubiquitin specific peptidases 366 1998-10-12 2016-07-19 2016-07-19 7874 ENSG00000187555 OTTHUMG00000176903 uc002czl.2 Z72499 NM_001321858 "CCDS32385|CCDS66941" Q93009 "12838346|9925944" MGI:2182061 RGD:1306915 USP7 602519 C19.016 +HGNC:12631 USP8 ubiquitin specific peptidase 8 protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "HumORF8|KIAA0055|UBPY|SPG59" ubiquitin specific protease 8 Ubiquitin specific peptidases 366 1999-02-01 2005-08-08 2016-10-05 9101 ENSG00000138592 OTTHUMG00000131645 uc001zyn.6 D29956 NM_005154 "CCDS10137|CCDS61632" P40818 "12838346|9582025|24482476" MGI:1934029 RGD:1304979 USP8 603158 403334 C19.011 +HGNC:13987 USP8P1 ubiquitin specific peptidase 8 pseudogene 1 pseudogene pseudogene Approved 6p21.33 06p21.33 "KIAA0055-hom|D84394.7" USP8P "ubiquitin specific protease 8 pseudogene|ubiquitin specific peptidase 8 pseudogene" 2004-01-12 2010-06-02 2010-06-02 2016-10-05 100287272 ENSG00000214892 OTTHUMG00000031047 NG_028817 PGOHUM00000262007 C19.P05 +HGNC:12632 USP9X ubiquitin specific peptidase 9, X-linked protein-coding gene gene with protein product Approved Xp11.4 Xp11.4 "DFFRX|FAF|MRX99" "ubiquitin specific protease 9, X chromosome (fat facets-like Drosophila)|ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila)|ubiquitin specific peptidase 9, X-linked (fat facets-like, Drosophila)" "X-linked mental retardation|Ubiquitin specific peptidases" "103|366" 1999-02-01 2006-02-14 2015-08-26 8239 ENSG00000124486 OTTHUMG00000021367 uc004dfb.3 X98296 NM_004652 "CCDS43930|CCDS55403" Q93008 8922996 MGI:894681 RGD:1560056 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=USP9X USP9X 300072 401212 C19.017 +HGNC:12633 USP9Y ubiquitin specific peptidase 9, Y-linked protein-coding gene gene with protein product Approved Yq11.221 Yq11.221 DFFRY fat facets-like homolog (Drosophila) ubiquitin specific peptidase 9, Y-linked (fat facets-like, Drosophila) "Ubiquitin specific peptidases|Minor histocompatibility antigens" "366|870" 1999-02-01 2009-03-17 2016-10-05 8287 ENSG00000114374 OTTHUMG00000036469 uc004fst.2 Y13618 NM_004654 CCDS14781 O00507 "8922996|9384609|19246359" MGI:1313274 RGD:9087771 USP9Y 400005 120450 C19.028 +HGNC:31741 USP9YP1 ubiquitin specific peptidase 9, Y-linked pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 USP9Y pseudogene 1 2004-06-24 2010-05-11 2016-10-05 387362 ENSG00000250951 OTTHUMG00000041979 NG_003171 12815422 PGOHUM00000233993 +HGNC:31742 USP9YP2 ubiquitin specific peptidase 9, Y-linked pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 USP9Y pseudogene 2 2004-06-24 2010-05-11 2016-10-05 387363 ENSG00000249501 OTTHUMG00000041954 NG_003172 12815422 PGOHUM00000233779 +HGNC:37739 USP9YP3 ubiquitin specific peptidase 9, Y-linked pseudogene 3 pseudogene pseudogene Approved Yq11.223 Yq11.223 USP9Y pseudogene 3 2010-02-10 2010-05-11 2014-11-19 387364 ENSG00000237023 OTTHUMG00000043577 NG_004832 PGOHUM00000234014 +HGNC:37740 USP9YP4 ubiquitin specific peptidase 9, Y-linked pseudogene 4 pseudogene pseudogene Approved Yp11.2 Yp11.2 USP9Y pseudogene 4 2010-02-11 2010-05-11 2010-09-21 387359 ENSG00000238154 OTTHUMG00000041408 NG_003168 PGOHUM00000233700 +HGNC:38418 USP9YP5 ubiquitin specific peptidase 9, Y-linked pseudogene 5 pseudogene pseudogene Approved Yq11.222 Yq11.222 USP9Y pseudogene 5 2010-05-11 2010-05-11 2014-11-19 100421217 ENSG00000249634 OTTHUMG00000041983 NG_021916 PGOHUM00000233774 +HGNC:38078 USP9YP6 ubiquitin specific peptidase 9, Y-linked pseudogene 6 pseudogene pseudogene Approved Yq11.222 Yq11.222 CDY24P "USP9Y pseudogene 6|chromodomain protein, Y-linked 24 pseudogene" 2010-05-11 2010-05-11 2014-11-19 100462820 ENSG00000226116 OTTHUMG00000041654 NG_021111 PGOHUM00000233766 +HGNC:38079 USP9YP7 ubiquitin specific peptidase 9, Y-linked pseudogene 7 pseudogene pseudogene Approved Yq11.222 Yq11.222 USP9Y pseudogene 7 2010-05-11 2010-05-11 2014-11-19 100462821 ENSG00000224485 OTTHUMG00000059524 NG_004636 PGOHUM00000233975 +HGNC:38424 USP9YP8 ubiquitin specific peptidase 9, Y-linked pseudogene 8 pseudogene pseudogene Approved Yq11.223 Yq11.223 USP9Y pseudogene 8 2010-05-11 2010-05-11 2014-11-19 100421219 ENSG00000229416 OTTHUMG00000043579 NG_021921 PGOHUM00000233802 +HGNC:38435 USP9YP9 ubiquitin specific peptidase 9, Y-linked pseudogene 9 pseudogene pseudogene Approved Yq11.23 Yq11.23 USP9Y pseudogene 9 2010-05-11 2010-05-11 2014-11-19 100421220 ENSG00000232614 OTTHUMG00000045258 NG_021931 PGOHUM00000233875 +HGNC:38454 USP9YP10 ubiquitin specific peptidase 9, Y-linked pseudogene 10 pseudogene pseudogene Approved Yq11.222 Yq11.222 USP9Y pseudogene 10 2010-05-11 2010-05-11 2014-11-19 100421222 ENSG00000238135 OTTHUMG00000041964 NG_004636 PGOHUM00000233998 +HGNC:38460 USP9YP11 ubiquitin specific peptidase 9, Y-linked pseudogene 11 pseudogene pseudogene Approved Yq11.23 Yq11.23 USP9Y pseudogene 11 2010-05-11 2010-05-11 2014-11-19 100421224 ENSG00000226369 OTTHUMG00000044989 NG_004755 PGOHUM00000234047 +HGNC:38720 USP9YP12 ubiquitin specific peptidase 9, Y-linked pseudogene 12 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-07-28 2014-11-18 100874382 ENSG00000227871 OTTHUMG00000044990 NG_032211 PGOHUM00000233834 +HGNC:38721 USP9YP13 ubiquitin specific peptidase 9, Y-linked pseudogene 13 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-07-28 2014-11-19 100861434 ENSG00000224571 OTTHUMG00000044988 NG_032005 PGOHUM00000234046 +HGNC:38748 USP9YP14 ubiquitin specific peptidase 9, Y-linked pseudogene 14 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 107133502 ENSG00000227494 OTTHUMG00000041981 NG_004636 PGOHUM00000233990 +HGNC:38751 USP9YP15 ubiquitin specific peptidase 9, Y-linked pseudogene 15 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 106480713 ENSG00000233120 OTTHUMG00000059527 NG_043508 PGOHUM00000233981 +HGNC:38752 USP9YP16 ubiquitin specific peptidase 9, Y-linked pseudogene 16 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 106478927 ENSG00000232744 OTTHUMG00000059526 NG_043553 PGOHUM00000233769 +HGNC:38753 USP9YP17 ubiquitin specific peptidase 9, Y-linked pseudogene 17 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-08-03 2014-11-19 106480714 ENSG00000229553 OTTHUMG00000043601 NG_043517 PGOHUM00000233809 +HGNC:38754 USP9YP18 ubiquitin specific peptidase 9, Y-linked pseudogene 18 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-08-03 2014-11-19 106480424 ENSG00000223407 OTTHUMG00000044994 NG_043241 PGOHUM00000233827 +HGNC:38755 USP9YP19 ubiquitin specific peptidase 9, Y-linked pseudogene 19 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2014-11-19 100500797 ENSG00000225326 OTTHUMG00000045257 NG_027712 PGOHUM00000233876 +HGNC:38767 USP9YP20 ubiquitin specific peptidase 9, Y-linked pseudogene 20 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2010-08-03 2014-11-19 106480717 ENSG00000230854 OTTHUMG00000045263 NG_043541 PGOHUM00000234093 +HGNC:38757 USP9YP21 ubiquitin specific peptidase 9, Y-linked pseudogene 21 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2014-11-19 106480355 ENSG00000227635 OTTHUMG00000045265 NG_044702 PGOHUM00000233879 +HGNC:38758 USP9YP22 ubiquitin specific peptidase 9, Y-linked pseudogene 22 pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-08-03 2014-11-19 100874383 ENSG00000224408 OTTHUMG00000041407 NG_032215 PGOHUM00000233919 +HGNC:38759 USP9YP23 ubiquitin specific peptidase 9, Y-linked pseudogene 23 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 100500798 ENSG00000223555 OTTHUMG00000059528 NG_027715 PGOHUM00000233973 +HGNC:38760 USP9YP24 ubiquitin specific peptidase 9, Y-linked pseudogene 24 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-08-03 2014-11-19 106478928 ENSG00000230814 OTTHUMG00000043849 NG_043562 PGOHUM00000234027 +HGNC:38761 USP9YP25 ubiquitin specific peptidase 9, Y-linked pseudogene 25 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-08-03 2014-11-19 106480715 ENSG00000224866 OTTHUMG00000044983 NG_043524 PGOHUM00000234043 +HGNC:38762 USP9YP26 ubiquitin specific peptidase 9, Y-linked pseudogene 26 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2014-11-19 106478929 ENSG00000234744 OTTHUMG00000045275 NG_043571 PGOHUM00000234095 +HGNC:38763 USP9YP27 ubiquitin specific peptidase 9, Y-linked pseudogene 27 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 106480716 ENSG00000235521 OTTHUMG00000059529 NG_043534 PGOHUM00000233762 +HGNC:38764 USP9YP28 ubiquitin specific peptidase 9, Y-linked pseudogene 28 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 107080622 ENSG00000224151 OTTHUMG00000041965 NG_004636 PGOHUM00000233782 +HGNC:38765 USP9YP29 ubiquitin specific peptidase 9, Y-linked pseudogene 29 pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-08-03 2014-11-19 106480425 ENSG00000232424 OTTHUMG00000044984 NG_043251 PGOHUM00000233829 +HGNC:38766 USP9YP30 ubiquitin specific peptidase 9, Y-linked pseudogene 30 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2014-11-18 100874384 ENSG00000235004 OTTHUMG00000045255 NG_032216 PGOHUM00000234088 +HGNC:38775 USP9YP31 ubiquitin specific peptidase 9, Y-linked pseudogene 31 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2014-11-19 106478930 ENSG00000229250 OTTHUMG00000045039 NG_043580 PGOHUM00000233838 +HGNC:38776 USP9YP32 ubiquitin specific peptidase 9, Y-linked pseudogene 32 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 106480718 ENSG00000237616 OTTHUMG00000059525 NG_043551 PGOHUM00000233767 +HGNC:38777 USP9YP33 ubiquitin specific peptidase 9, Y-linked pseudogene 33 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2014-11-19 106478931 ENSG00000232064 OTTHUMG00000045270 NG_043590 PGOHUM00000233872 +HGNC:38778 USP9YP34 ubiquitin specific peptidase 9, Y-linked pseudogene 34 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-08-03 2014-11-19 387361 ENSG00000233378 OTTHUMG00000041656 NG_029262 PGOHUM00000233977 +HGNC:38779 USP9YP35 ubiquitin specific peptidase 9, Y-linked pseudogene 35 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2014-11-19 106480719 ENSG00000237467 OTTHUMG00000045038 NG_043558 PGOHUM00000234050 +HGNC:38780 USP9YP36 ubiquitin specific peptidase 9, Y-linked pseudogene 36 pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-08-03 2014-11-19 106478932 ENSG00000229709 OTTHUMG00000045268 NG_043598 PGOHUM00000234084 +HGNC:12608 USP10 ubiquitin specific peptidase 10 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 "UBPO|KIAA0190" ubiquitin specific protease 10 Ubiquitin specific peptidases 366 1999-02-01 2005-08-08 2016-01-15 9100 ENSG00000103194 OTTHUMG00000176770 uc002fii.4 D80012 XM_017023863 "CCDS45537|CCDS62004" Q14694 12838346 MGI:894652 RGD:1561965 USP10 609818 C19.018 +HGNC:31752 USP10P1 ubiquitin specific peptidase 10 pseudogene 1 pseudogene pseudogene Approved 14q11.2 14q11.2 ubiquitin specific protease 10 pseudogene 1 2004-07-19 2007-01-31 2012-11-02 780779 NG_005813 +HGNC:33272 USP10P2 ubiquitin specific peptidase10 pseudogene 2 pseudogene pseudogene Approved 14q11.1 14q11.1 2007-01-22 2007-01-22 780778 NG_005812 +HGNC:12609 USP11 ubiquitin specific peptidase 11 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 UHX1 ubiquitin specific protease 11 Ubiquitin specific peptidases 366 1999-02-01 2005-08-08 2016-10-05 8237 ENSG00000102226 OTTHUMG00000021437 uc064yux.1 U44839 NM_004651 CCDS14277 P51784 12838346 MGI:2384312 RGD:1303052 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=USP11 USP11 300050 C19.014 +HGNC:20485 USP12 ubiquitin specific peptidase 12 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 USP12L1 "ubiquitin specific protease 12 like 1|ubiquitin specific protease 12" Ubiquitin specific peptidases 366 2003-02-19 2003-10-08 2005-08-08 2014-11-19 219333 ENSG00000152484 OTTHUMG00000016626 uc001uqy.4 AL049221 NM_182488 CCDS31952 O75317 12838346 MGI:1270128 RGD:1308045 USP12 +HGNC:39961 USP12-AS1 USP12 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.13 13q12.13 USP12 antisense RNA 1 (non-protein coding) 2011-04-18 2012-08-15 2014-11-19 100874070 ENSG00000232162 OTTHUMG00000016625 uc058waa.1 NR_046547 +HGNC:39962 USP12-AS2 USP12 antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 13q12.13 13q12.13 "USP12 antisense RNA 2 (non-protein coding)|USP12 antisense RNA 2" 2011-04-18 2012-10-15 2014-11-18 100874071 ENSG00000230641 OTTHUMG00000016628 uc032aab.2 NR_046548 +HGNC:12610 USP12P1 ubiquitin specific peptidase 12 pseudogene 1 pseudogene pseudogene Approved 5q33-q34 05q33-q34 "UBH1|USP12" "ubiquitin specific protease 12|ubiquitin specific protease 12 pseudogene 1" 1999-02-01 2003-10-08 2005-08-08 2014-11-19 9959 AF022789 NG_002822 12838346 603091 PGOHUM00000235832 +HGNC:21410 USP12PX ubiquitin specific peptidase 12 pseudogene, X-linked pseudogene pseudogene Approved Xq21.31 Xq21.31 USP12P2 "ubiquitin specific protease 12 pseudogene 2|ubiquitin specific peptidase 12 pseudogene 2" 2003-10-07 2010-05-12 2010-05-12 2014-11-18 254700 ENSG00000226081 OTTHUMG00000021956 NG_002823 PGOHUM00000241887 +HGNC:23195 USP12PY ubiquitin specific peptidase 12 pseudogene, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 USP12P3 "ubiquitin specific protease 12 pseudogene 3|ubiquitin specific peptidase 12 pseudogene 3" 2003-10-07 2010-05-12 2010-05-12 2014-11-19 359799 ENSG00000232927 OTTHUMG00000036183 NG_002824 +HGNC:12611 USP13 ubiquitin specific peptidase 13 (isopeptidase T-3) protein-coding gene gene with protein product Approved 3q26.33 03q26.33 IsoT-3 ubiquitin specific protease 13 (isopeptidase T-3) Ubiquitin specific peptidases 366 1999-02-01 2005-08-08 2016-10-05 8975 ENSG00000058056 OTTHUMG00000157783 uc003fkh.4 U75362 XM_017007425 CCDS3235 Q92995 12838346 MGI:1919857 RGD:1306044 USP13 603591 C19.012 +HGNC:12612 USP14 ubiquitin specific peptidase 14 protein-coding gene gene with protein product Approved 18p11.32 18p11.32 TGT "ubiquitin specific protease 14 (tRNA-guanine transglycosylase)|ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase)" Ubiquitin specific peptidases 366 1999-02-01 2016-02-23 2016-02-23 9097 ENSG00000101557 OTTHUMG00000178040 uc002kkf.2 U30888 NM_005151 "CCDS32780|CCDS32781" P54578 12838346 MGI:1928898 RGD:1311825 USP14 607274 C19.015 objectId:2429 +HGNC:12613 USP15 ubiquitin specific peptidase 15 protein-coding gene gene with protein product Approved 12q14 12q14 "KIAA0529|UNPH4" ubiquitin specific protease 15 Ubiquitin specific peptidases 366 1999-07-09 2005-08-08 2014-11-19 9958 ENSG00000135655 OTTHUMG00000170186 uc001srb.3 AB011101 NM_006313 "CCDS8963|CCDS58250|CCDS58251" Q9Y4E8 12838346 MGI:101857 RGD:628795 USP15 604731 C19.022 +HGNC:12614 USP16 ubiquitin specific peptidase 16 protein-coding gene gene with protein product Approved 21q21 21q21 Ubp-M ubiquitin specific protease 16 Ubiquitin specific peptidases 366 1999-07-09 2005-08-08 2015-08-26 10600 ENSG00000156256 OTTHUMG00000078802 uc002ymy.4 AF126736 XM_017028257 "CCDS13583|CCDS42912" Q9Y5T5 12838346 MGI:1921362 RGD:1307192 USP16 604735 C19.021 +HGNC:37182 USP17L1 ubiquitin specific peptidase 17-like family member 1 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 USP17L1P ubiquitin specific peptidase 17-like family member 1, pseudogene 2009-08-12 2014-09-09 2014-09-09 2015-09-03 401447 ENSG00000230549 OTTHUMG00000150578 NM_001256873 CCDS78298 Q7RTZ2 "17109758|15780755" +HGNC:34434 USP17L2 ubiquitin specific peptidase 17-like family member 2 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 DUB3 deubiquitinating enzyme 3 ubiquitin specific peptidase 17-like 2 Ubiquitin specific peptidases 366 2009-08-12 2012-10-09 2015-09-03 377630 ENSG00000223443 OTTHUMG00000165295 uc003wvc.2 BC156290 NM_201402 CCDS43713 Q6R6M4 RGD:6500127 USP17L2 610186 +HGNC:37175 USP17L3 ubiquitin specific peptidase 17-like family member 3 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "USP17B|USP17F" ubiquitin specific peptidase 17-like 3 2009-08-12 2012-10-09 2015-09-03 645836 ENSG00000225327 OTTHUMG00000165406 uc031taf.1 NM_001256871 CCDS78301 A6NCW0 "17109758|15780755" +HGNC:37176 USP17L4 ubiquitin specific peptidase 17-like family member 4 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 ubiquitin specific peptidase 17-like 4 2009-08-12 2012-10-09 2015-09-03 645402 ENSG00000236125 OTTHUMG00000150574 uc031tab.1 NM_001256874 CCDS78299 A6NCW7 "17109758|15780755" +HGNC:37177 USP17L5 ubiquitin specific peptidase 17-like family member 5 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 ubiquitin specific peptidase 17-like 5 2009-08-12 2012-10-09 2015-09-03 728386 ENSG00000227140 OTTHUMG00000160182 uc021xlo.1 NM_001242329 CCDS59467 A8MUK1 "17109758|15780755" +HGNC:37179 USP17L6P ubiquitin specific peptidase 17-like family member 6, pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 "DUB4|vDUB4|USP17L6" ubiquitin specific peptidase 17-like 6, pseudogene 2009-08-12 2012-10-09 2012-10-09 391622 ENSG00000205946 OTTHUMG00000160200 NR_027279 Q6QN14 "17109758|15780755" PGOHUM00000259929 +HGNC:37180 USP17L7 ubiquitin specific peptidase 17-like family member 7 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 ubiquitin specific peptidase 17-like 7 2009-08-12 2012-10-09 2016-09-26 392197 ENSG00000226430 OTTHUMG00000165294 uc031tag.2 NM_001256869 CCDS78305 P0C7H9 "17109758|15780755" PGOHUM00000258331 +HGNC:37181 USP17L8 ubiquitin specific peptidase 17-like family member 8 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 ubiquitin specific peptidase 17-like 8 2009-08-12 2012-10-09 2015-09-03 392188 ENSG00000237038 OTTHUMG00000165405 uc064kbr.1 NM_001256872 CCDS78300 P0C7I0 "17109758|15780755" +HGNC:12615 USP17L9P ubiquitin specific peptidase 17-like family member 9, pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 RS447 USP17 ubiquitin specific peptidase 17 1999-07-21 2012-10-09 2012-10-09 2014-11-18 391627 ENSG00000251694 OTTHUMG00000160188 D38378 NR_046416 12838346 607011 PGOHUM00000245839 C19.023 +HGNC:44438 USP17L10 ubiquitin specific peptidase 17-like family member 10 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2012-10-09 2015-09-03 100287144 ENSG00000231396 OTTHUMG00000160160 uc031sdg.1 NM_001256852 CCDS59454 C9JJH3 +HGNC:44439 USP17L11 ubiquitin specific peptidase 17-like family member 11 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2012-10-09 2015-09-03 100287178 ENSG00000233136 OTTHUMG00000160162 uc031sdh.1 NM_001256854 CCDS59455 C9JVI0 +HGNC:44440 USP17L12 ubiquitin specific peptidase 17-like family member 12 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2012-10-09 2015-09-03 100287205 ENSG00000227551 OTTHUMG00000160148 uc031sdi.1 NM_001256853 CCDS59456 C9JPN9 +HGNC:44441 USP17L13 ubiquitin specific peptidase 17-like family member 13 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 100287238 ENSG00000232399 OTTHUMG00000160152 uc031sdj.1 NM_001256855 CCDS59457 C9JLJ4 USP17L13 +HGNC:44442 USP17L14P ubiquitin specific peptidase 17-like family member 14, pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 2012-10-09 2012-10-09 100287270 ENSG00000249482 OTTHUMG00000160147 NG_022047 PGOHUM00000245829 +HGNC:44443 USP17L15 ubiquitin specific peptidase 17-like family member 15 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 100288520 ENSG00000223569 OTTHUMG00000160155 uc031sdk.1 NM_001256894 CCDS77901 C9J2P7 +HGNC:44444 USP17L16P ubiquitin specific peptidase 17-like family member 16, pseudogene pseudogene pseudogene Approved 4p16.1 04p16.1 2012-10-09 2012-10-09 100287302 ENSG00000250231 OTTHUMG00000160161 NG_022048 PGOHUM00000259928 +HGNC:44445 USP17L17 ubiquitin specific peptidase 17-like family member 17 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 100287327 ENSG00000249104 OTTHUMG00000160158 uc031sdl.1 NM_001256857 CCDS59458 D6RBQ6 +HGNC:44446 USP17L18 ubiquitin specific peptidase 17-like family member 18 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 100287364 ENSG00000250844 OTTHUMG00000160153 uc011bwp.2 NM_001256859 CCDS59459 D6R9N7 +HGNC:44447 USP17L19 ubiquitin specific peptidase 17-like family member 19 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 100287404 ENSG00000248920 OTTHUMG00000160146 uc031sdm.1 NM_001256860 CCDS59460 D6RCP7 +HGNC:44448 USP17L20 ubiquitin specific peptidase 17-like family member 20 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 100287441 ENSG00000250745 OTTHUMG00000160150 uc031sdn.1 NM_001256861 CCDS59461 D6RJB6 +HGNC:44449 USP17L21 ubiquitin specific peptidase 17-like family member 21 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 100287478 ENSG00000249811 OTTHUMG00000160149 uc031sdo.1 NM_001256862 CCDS59462 D6R901 +HGNC:44450 USP17L22 ubiquitin specific peptidase 17-like family member 22 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 100287513 ENSG00000248933 OTTHUMG00000160159 uc031sdp.1 NM_001256863 CCDS59463 D6RA61 +HGNC:44451 USP17L23 ubiquitin specific peptidase 17-like family member 23 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2012-10-09 2015-09-03 101241878 ENSG00000250913 OTTHUMG00000160156 uc062vda.1 D6RBM5 +HGNC:44453 USP17L24 ubiquitin specific peptidase 17-like family member 24 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 728369 ENSG00000232264 OTTHUMG00000160201 uc021xll.1 NM_001242327 CCDS59464 Q0WX57 USP17L24 +HGNC:44452 USP17L25 ubiquitin specific peptidase 17-like family member 25 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 728373 ENSG00000230430 OTTHUMG00000160192 uc021xlm.1 NM_001242326 CCDS59465 Q0WX57 USP17L25 +HGNC:44454 USP17L26 ubiquitin specific peptidase 17-like family member 26 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 728379 ENSG00000229579 OTTHUMG00000160189 uc021xln.1 NM_001242328 CCDS59466 Q0WX57 USP17L26 +HGNC:44455 USP17L27 ubiquitin specific peptidase 17-like family member 27 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 728393 ENSG00000235780 OTTHUMG00000160186 uc021xlp.1 NM_001242330 CCDS59468 Q0WX57 USP17L27 +HGNC:44456 USP17L28 ubiquitin specific peptidase 17-like family member 28 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 728400 ENSG00000231051 OTTHUMG00000160191 uc021xlq.1 NM_001242331 CCDS59469 Q0WX57 USP17L28 +HGNC:44457 USP17L29 ubiquitin specific peptidase 17-like family member 29 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 728405 ENSG00000231637 OTTHUMG00000160183 uc021xlr.1 NM_001242332 CCDS59470 Q0WX57 USP17L29 +HGNC:44458 USP17L30 ubiquitin specific peptidase 17-like family member 30 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 2012-10-09 2015-09-03 728419 ENSG00000228856 OTTHUMG00000160199 uc031sdr.1 NM_001256867 CCDS59471 Q0WX57 USP17L30 +HGNC:12616 USP18 ubiquitin specific peptidase 18 protein-coding gene gene with protein product Approved 22q11.2 22q11.2 ubiquitin specific protease 18 Ubiquitin specific peptidases 366 1999-11-16 2005-08-08 2015-09-03 11274 ENSG00000184979 OTTHUMG00000150104 uc002zny.4 AJ243526 NM_017414 CCDS13752 Q9UMW8 12838346 MGI:1344364 RGD:1359153 USP18 607057 C19.030 +HGNC:12617 USP19 ubiquitin specific peptidase 19 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "KIAA0891|ZMYND9" ubiquitin specific protease 19 "Zinc fingers MYND-type|Ubiquitin specific peptidases" "87|366" 1999-09-16 2005-08-08 2014-11-19 10869 ENSG00000172046 OTTHUMG00000133611 uc003cwd.3 AB020698 NM_006677 "CCDS43090|CCDS56254|CCDS56255|CCDS56256" O94966 12838346 MGI:1918722 RGD:1303276 USP19 614471 C19.024 +HGNC:12619 USP20 ubiquitin specific peptidase 20 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 KIAA1003 ubiquitin specific protease 20 Ubiquitin specific peptidases 366 1999-09-16 2005-08-08 2014-11-19 10868 ENSG00000136878 OTTHUMG00000020793 uc004bys.4 AB023220 XM_011518161 CCDS43892 Q9Y2K6 12838346 MGI:1921520 RGD:1305621 USP20 615143 C19.025 +HGNC:12620 USP21 ubiquitin specific peptidase 21 protein-coding gene gene with protein product Approved 1q23.3 01q23.3 USP16 USP23 ubiquitin specific protease 21 Ubiquitin specific peptidases 366 2000-06-08 2005-08-08 2016-10-05 27005 ENSG00000143258 OTTHUMG00000033154 uc031vci.2 AF177758 XM_017001036 "CCDS30920|CCDS81392" Q9UK80 "12838346|10799498" MGI:1353665 RGD:1588822 USP21 604729 C19.034 +HGNC:12621 USP22 ubiquitin specific peptidase 22 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 KIAA1063 USP3L "ubiquitin specific protease 22|ubiquitin specific peptidase 3-like" "Ubiquitin specific peptidases|SAGA complex" "366|1059" 1999-12-20 2005-08-08 2014-11-18 23326 ENSG00000124422 OTTHUMG00000133621 uc002gym.4 AB028986 XM_005256575 CCDS42285 Q9UPT9 12838346 MGI:2144157 RGD:1310354 USP22 612116 C19.035 +HGNC:12623 USP24 ubiquitin specific peptidase 24 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 KIAA1057 ubiquitin specific protease 24 Ubiquitin specific peptidases 366 1999-12-20 2005-08-08 2016-04-25 23358 ENSG00000162402 OTTHUMG00000008135 uc021onw.2 AB028980 XM_017000831 CCDS44154 Q9UPU5 12838346 MGI:1919936 RGD:1306799 USP24 610569 C19.047 +HGNC:42014 USP24P1 ubiquitin specific peptidase 24 pseudogene 1 pseudogene pseudogene Approved 13q12.11 13q12.11 2011-06-01 2014-11-18 100874248 ENSG00000229375 OTTHUMG00000016474 NG_032390 +HGNC:12624 USP25 ubiquitin specific peptidase 25 protein-coding gene gene with protein product Approved 21q21.1 21q21.1 USP21 ubiquitin specific protease 25 Ubiquitin specific peptidases 366 2000-02-10 2005-08-08 2016-10-05 29761 ENSG00000155313 OTTHUMG00000074343 uc002yjy.3 AF170562 XM_017028321 "CCDS33515|CCDS63336|CCDS63337" Q9UHP3 "12838346|10612803" MGI:1353655 RGD:1309003 USP25 604736 C19.041 +HGNC:13485 USP26 ubiquitin specific peptidase 26 protein-coding gene gene with protein product Approved Xq26.2 Xq26.2 ubiquitin specific protease 26 Ubiquitin specific peptidases 366 2001-04-26 2005-08-08 2015-08-26 83844 ENSG00000134588 OTTHUMG00000022429 uc010nrm.1 AF285593 NM_031907 CCDS14635 Q9BXU7 12838346 MGI:1933247 RGD:1563443 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=USP26 USP26 300309 C19.046 3.4.19.12 +HGNC:13486 USP27X ubiquitin specific peptidase 27, X-linked protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 USP27 "ubiquitin specific protease 27, X chromosome|ubiquitin specific protease 27, X-linked" Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-01-15 389856 ENSG00000273820 OTTHUMG00000189037 uc033edm.2 AW851065 XM_372213 CCDS65260 A6NNY8 12838346 MGI:1859645 RGD:1564628 USP27X 300975 +HGNC:27249 USP27X-AS1 USP27X antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved Xp11.23 Xp11.23 2013-05-17 2014-11-19 158572 ENSG00000234390 OTTHUMG00000024154 NR_026742 +HGNC:12625 USP28 ubiquitin specific peptidase 28 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 KIAA1515 ubiquitin specific protease 28 Ubiquitin specific peptidases 366 2000-05-26 2005-08-08 2016-10-05 57646 ENSG00000048028 OTTHUMG00000168205 uc001poh.4 AB040948 XM_005271633 "CCDS31680|CCDS73394" Q96RU2 "12838346|11597335" MGI:2442293 RGD:1311555 USP28 610748 C19.054 +HGNC:18563 USP29 ubiquitin specific peptidase 29 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 ubiquitin specific protease 29 Ubiquitin specific peptidases 366 2002-04-30 2005-08-08 2015-08-26 57663 ENSG00000131864 OTTHUMG00000183101 uc002qny.4 NM_020903 CCDS33124 Q9HBJ7 12838346 MGI:1888998 RGD:1306648 USP29 609546 C19.040 +HGNC:20065 USP30 ubiquitin specific peptidase 30 protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "MGC10702|FLJ40511" ubiquitin specific protease 30 Ubiquitin specific peptidases 366 2003-09-30 2005-08-08 2016-10-05 84749 ENSG00000135093 OTTHUMG00000133613 uc010sxi.3 BC022094 NM_032663 "CCDS9123|CCDS76599" Q70CQ3 12838346 MGI:2140991 RGD:1307949 USP30 612492 C19.060 +HGNC:40909 USP30-AS1 USP30 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 12q24.11 12q24.11 USP30 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-18 100131733 ENSG00000256262 OTTHUMG00000169245 uc021rdn.2 NR_038996 +HGNC:20060 USP31 ubiquitin specific peptidase 31 protein-coding gene gene with protein product Approved 16p12.2 16p12.2 KIAA1203 ubiquitin specific protease 31 Ubiquitin specific peptidases 366 2004-04-05 2005-08-08 2016-10-05 57478 ENSG00000103404 OTTHUMG00000094793 uc002dll.4 AB033029 NM_020718 CCDS10607 Q70CQ4 12838346 MGI:1923429 RGD:1308183 USP31 C19.071 +HGNC:19143 USP32 ubiquitin specific peptidase 32 protein-coding gene gene with protein product Approved 17q23.3 17q23.3 "NY-REN-60|USP10" ubiquitin specific protease 32 "Ubiquitin specific peptidases|EF-hand domain containing" "366|863" 2003-05-29 2005-08-08 2014-11-19 84669 ENSG00000170832 OTTHUMG00000180001 uc002iyo.2 AF533230 NM_032582 CCDS32697 Q8NFA0 12838346 MGI:2144475 RGD:1306657 USP32 607740 C19.044 +HGNC:43570 USP32P1 ubiquitin specific peptidase 32 pseudogene 1 pseudogene pseudogene Approved 17p11.2 17p11.2 2011-11-09 2015-08-25 162632 ENSG00000188933 OTTHUMG00000186451 NR_003190 +HGNC:30751 USP32P2 ubiquitin specific peptidase 32 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 TL132 2011-11-10 2014-03-20 220594 ENSG00000233327 OTTHUMG00000186369 NR_003554 11997339 PGOHUM00000250808 +HGNC:43576 USP32P3 ubiquitin specific peptidase 32 pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2011-11-10 2013-02-15 347716 ENSG00000189423 OTTHUMG00000179809 NG_002719 PGOHUM00000250833 +HGNC:43577 USP32P4 ubiquitin specific peptidase 32 pseudogene 4 pseudogene pseudogene Approved 17q23.2 17q23.2 2011-11-10 2011-11-10 100874252 NG_032561 PGOHUM00000259193 +HGNC:20059 USP33 ubiquitin specific peptidase 33 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "KIAA1097|VDU1" ubiquitin specific protease 33 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-10-05 23032 ENSG00000077254 OTTHUMG00000009651 uc001dhu.5 AF383173 NM_015017 "CCDS678|CCDS679|CCDS680" Q8TEY7 12838346 MGI:2159711 RGD:1307848 USP33 615146 C19.037 +HGNC:20066 USP34 ubiquitin specific peptidase 34 protein-coding gene gene with protein product Approved 2p15 02p15 "KIAA0570|KIAA0729" ubiquitin specific protease 34 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-10-05 9736 ENSG00000115464 OTTHUMG00000152265 uc002sbe.4 AB011142 NM_014709 CCDS42686 Q70CQ2 12838346 MGI:109473 RGD:1565181 USP34 615295 C19.067 +HGNC:20061 USP35 ubiquitin specific peptidase 35 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 KIAA1372 ubiquitin specific protease 35 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-08-26 57558 ENSG00000118369 OTTHUMG00000166492 uc021qny.2 AB037793 XM_290527 CCDS41693 Q9P2H5 12838346 MGI:2685339 RGD:1565984 USP35 C19.059 +HGNC:20062 USP36 ubiquitin specific peptidase 36 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "KIAA1453|FLJ12851" ubiquitin specific protease 36 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-08-26 57602 ENSG00000055483 OTTHUMG00000177542 uc002jwa.2 AB040886 NM_025090 CCDS32755 Q9P275 12838346 MGI:1919594 RGD:1309937 USP36 612543 C19.042 +HGNC:20063 USP37 ubiquitin specific peptidase 37 protein-coding gene gene with protein product Approved 2q35 02q35 KIAA1594 ubiquitin specific protease 37 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-08-26 57695 ENSG00000135913 OTTHUMG00000133113 uc010fvs.1 AB046814 NM_020935 CCDS2418 Q86T82 12838346 MGI:2442483 RGD:2319715 USP37 C19.053 +HGNC:20067 USP38 ubiquitin specific peptidase 38 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "KIAA1891|HP43.8KD" ubiquitin specific protease 38 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-10-05 84640 ENSG00000170185 OTTHUMG00000161420 uc003ijb.4 AF211481 NM_032557 "CCDS3758|CCDS77964" Q8NB14 12838346 MGI:1922091 RGD:1311974 USP38 C19.056 +HGNC:20071 USP39 ubiquitin specific peptidase 39 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 "SAD1|CGI-21|SNRNP65" "snRNP assembly defective 1 homolog (S.cerevisiae)|small nuclear ribonucleoprotein 65kDa (U4/U6.U5)" ubiquitin specific protease 39 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-08-26 10713 ENSG00000168883 OTTHUMG00000153090 uc002sqe.5 AF132955 NM_006590 "CCDS33234|CCDS58716|CCDS58717|CCDS74534" Q53GS9 12838346 MGI:107622 RGD:1308103 USP39 611594 +HGNC:20069 USP40 ubiquitin specific peptidase 40 protein-coding gene gene with protein product Approved 2q37.1 02q37.1 FLJ10785 ubiquitin specific protease 40 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-08-26 55230 ENSG00000085982 OTTHUMG00000153199 uc010zmr.3 AK001647 XM_114294 CCDS46547 Q9NVE5 12838346 MGI:2443184 RGD:1309613 USP40 610570 C19.069 +HGNC:20070 USP41 ubiquitin specific peptidase 41 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 ubiquitin specific protease 41 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-10-05 373856 ENSG00000161133 OTTHUMG00000151317 uc062bsg.1 AJ586979 XM_036729 Q3LFD5 12838346 USP41 C19.070 +HGNC:20068 USP42 ubiquitin specific peptidase 42 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 FLJ12697 ubiquitin specific protease 42 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-10-05 84132 ENSG00000106346 OTTHUMG00000151888 uc011jwp.3 AK022759 XM_166526 CCDS47535 Q9H9J4 12838346 MGI:1924050 RGD:1305231 USP42 C19.048 +HGNC:20072 USP43 ubiquitin specific peptidase 43 protein-coding gene gene with protein product Approved 17p12 17p12 FLJ30626 ubiquitin specific protease 43 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-08-26 124739 ENSG00000154914 OTTHUMG00000177942 uc010cod.5 AK055188 NM_153210 "CCDS45610|CCDS58516" Q70EL4 12838346 MGI:2444541 RGD:2303824 USP43 C19.976 +HGNC:20064 USP44 ubiquitin specific peptidase 44 protein-coding gene gene with protein product Approved 12q21.33 12q21.33 FLJ14528 ubiquitin specific protease 44 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-08-26 84101 ENSG00000136014 OTTHUMG00000170281 uc001teh.5 AK027434 NM_032147 CCDS9053 Q9H0E7 12838346 MGI:3045318 RGD:1308216 USP44 610993 C19.057 +HGNC:20080 USP45 ubiquitin specific peptidase 45 protein-coding gene gene with protein product Approved 6q16.2 06q16.2 MGC14793 ubiquitin specific protease 45 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2014-11-19 85015 ENSG00000123552 OTTHUMG00000015267 uc063qfl.1 AL832030 NM_032929 CCDS34501 Q70EL2 12838346 MGI:101850 RGD:1310976 USP45 C19.064 +HGNC:20075 USP46 ubiquitin specific peptidase 46 protein-coding gene gene with protein product Approved 4q12 04q12 FLJ12552 ubiquitin specific protease 46 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-09-03 64854 ENSG00000109189 OTTHUMG00000160640 uc003gzn.4 AK022614 NM_022832 "CCDS47053|CCDS47054" P62068 12838346 MGI:1916977 RGD:1564808 USP46 612849 C19.052 +HGNC:43991 USP46-AS1 USP46 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q12 04q12 USP46 antisense RNA 1 (non-protein coding) 2012-05-25 2012-08-15 2012-10-12 643783 ENSG00000248866 OTTHUMG00000160639 uc062wov.1 "BX354350|CN313378" NR_125363 +HGNC:20076 USP47 ubiquitin specific peptidase 47 protein-coding gene gene with protein product Approved 11p15.3 11p15.3 "Trf (TATA binding protein-related factor)-proximal homolog (Drosophila)|ubiquitin specific protease 47" Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-10-05 55031 ENSG00000170242 OTTHUMG00000165685 uc001mjr.4 AK027362 NM_017944 "CCDS41619|CCDS60725|CCDS81554" Q96K76 12838346 MGI:1922246 RGD:1310411 USP47 614460 C19.055 +HGNC:18533 USP48 ubiquitin specific peptidase 48 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "FLJ23277|FLJ11328|FLJ20103|FLJ23054|MGC14879" USP31 "ubiquitin specific protease 31|ubiquitin specific protease 48" Ubiquitin specific peptidases 366 2003-05-29 2004-04-07 2005-08-08 2015-08-26 84196 ENSG00000090686 OTTHUMG00000007798 uc001bfb.4 AF502942 NM_032236 "CCDS30623|CCDS44084|CCDS81277" Q86UV5 12838346 MGI:2158502 RGD:735213 USP48 C19.068 +HGNC:20078 USP49 ubiquitin specific peptidase 49 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 MGC20741 ubiquitin specific protease 49 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-10-05 25862 ENSG00000164663 OTTHUMG00000014688 uc003orh.3 AJ586139 NM_018561 "CCDS4861|CCDS69111" Q70CQ1 14715245 MGI:2685391 RGD:1310513 USP49 C19.073 +HGNC:20079 USP50 ubiquitin specific peptidase 50 protein-coding gene gene with protein product Approved 15q21.1 15q21.1 ubiquitin specific protease 50 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2015-08-26 373509 ENSG00000170236 OTTHUMG00000167591 uc021sky.2 AI990110 XR_001751265 CCDS53944 Q70EL3 12838346 MGI:1922333 RGD:1564751 USP50 C19.058 +HGNC:23086 USP51 ubiquitin specific peptidase 51 protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 ubiquitin specific protease 51 Ubiquitin specific peptidases 366 2003-09-04 2005-08-08 2016-10-05 158880 ENSG00000247746 OTTHUMG00000021656 uc004dun.3 BF741256 NM_201286 CCDS14370 Q70EK9 12838346 MGI:3588217 RGD:1562211 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=USP51 USP51 C19.065 +HGNC:29255 USP53 ubiquitin specific peptidase 53 protein-coding gene gene with protein product Approved 4q26 04q26 KIAA1350 ubiquitin specific protease 53 Ubiquitin specific peptidases 366 2004-01-28 2005-08-08 2015-08-26 54532 ENSG00000145390 OTTHUMG00000161331 uc003icr.5 BC017382 XM_052597 CCDS43265 Q70EK8 "10718198|14715245" MGI:2139607 RGD:1306615 USP53 C19.081 +HGNC:23513 USP54 ubiquitin specific peptidase 54 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "FLJ37318|bA137L10.3|bA137L10.4" C10orf29 "chromosome 10 open reading frame 29|ubiquitin specific protease 54" Ubiquitin specific peptidases 366 2003-11-21 2004-01-30 2005-08-08 2016-10-05 159195 ENSG00000166348 OTTHUMG00000018469 uc001juo.4 AJ583820 NM_152586 CCDS7329 Q70EL1 14715245 MGI:1926037 RGD:1303206 USP54 C19.080 +HGNC:20294 USPL1 ubiquitin specific peptidase like 1 protein-coding gene gene with protein product Approved 13q12.3 13q12.3 "bA121O19.1|D13S106E" C13orf22 chromosome 13 open reading frame 22 "Ubiquitin specific peptidases|Ubiquitin specific peptidase like " "366|988" 2004-04-16 2005-11-24 2005-11-24 2015-08-26 10208 ENSG00000132952 OTTHUMG00000016675 uc001utc.3 X59131 NM_005800 "CCDS9336|CCDS81760" Q5W0Q7 22878415 MGI:2442342 RGD:1310835 USPL1 +HGNC:17223 UST uronyl 2-sulfotransferase protein-coding gene gene with protein product Approved 6q25.1 06q25.1 2OST Sulfotransferases, membrane bound 763 2001-12-07 2016-03-14 2016-03-14 10090 ENSG00000111962 OTTHUMG00000016135 uc003qmg.4 AB020316 NM_005715 CCDS5213 Q9Y2C2 10187838 MGI:2442406 RGD:1304743 UST 610752 +HGNC:40802 UST-AS1 UST antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6q25.1 06q25.1 2015-10-15 2015-10-15 100128176 ENSG00000227660 OTTHUMG00000015777 NR_038408 +HGNC:12634 UTF1 undifferentiated embryonic cell transcription factor 1 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 1998-11-04 2016-10-05 8433 ENSG00000171794 OTTHUMG00000019302 uc001lmc.3 AB011076 NM_003577 CCDS31318 Q5T230 "9748258|18281244" MGI:1276125 RGD:1589375 UTF1 604130 +HGNC:24477 UTP3 UTP3, small subunit processome component homolog (S. cerevisiae) protein-coding gene gene with protein product Approved 4q13.3 04q13.3 "FLJ23256|DKFZp761F222|SAS10|CRLZ1" disrupter of silencing 10 UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) 2007-08-21 2016-02-25 2016-02-25 57050 ENSG00000132467 OTTHUMG00000129911 uc003hfo.3 AL136590 NM_020368 CCDS3546 Q9NQZ2 12477932 MGI:1919230 RGD:1308540 UTP3 611614 +HGNC:1983 UTP4 UTP4, small subunit processome component protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "NAIC|FLJ14728|KIAA1988|TEX292|CIRHIN" UTP4, small subunit (SSU) processome component, homolog (yeast) CIRH1A cirrhosis, autosomal recessive 1A (cirhin) WD repeat domain containing 362 2000-03-15 2015-11-03 2016-02-25 2016-10-05 84916 ENSG00000141076 OTTHUMG00000137570 uc002ews.5 AB075868 NM_032830 CCDS10872 Q969X6 "10820129|20385600" MGI:1096573 RGD:1311341 607456 173184 +HGNC:18279 UTP6 UTP6, small subunit processome component protein-coding gene gene with protein product Approved 17q11.2 17q11.2 HCA66 hepatocellular carcinoma associated antigen 66 C17orf40 "chromosome 17 open reading frame 40|UTP6, small subunit (SSU) processome component, homolog (yeast)" UTPB complex 1225 2005-05-24 2006-05-16 2016-02-25 2016-02-25 55813 ENSG00000108651 OTTHUMG00000132815 uc002hgr.4 AF116631 NM_018428 CCDS11269 Q9NYH9 "10843809|16138909|22434888" MGI:2445193 RGD:1311017 UTP6 +HGNC:24329 UTP11 UTP11, small subunit processome component homolog (S. cerevisiae) protein-coding gene gene with protein product Approved 1p34.3 01p34.3 CGI-94 UTP11L UTP11-like, U3 small nucleolar ribonucleoprotein (yeast) 2005-06-22 2016-02-25 2016-02-25 2016-02-25 51118 ENSG00000183520 OTTHUMG00000004435 uc001ccn.5 AF151852 NM_016037 CCDS429 Q9Y3A2 "11860508|10810093" MGI:1914455 RGD:621412 609440 +HGNC:10665 UTP14A UTP14A small subunit processome component protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 NY-CO-16 SDCCAG16 "serologically defined colon cancer antigen 16|UTP14, U3 small nucleolar ribonucleoprotein, homolog A (yeast)" 1999-08-25 2004-06-01 2015-11-18 2015-11-18 10813 ENSG00000156697 OTTHUMG00000022378 uc004euz.4 AF039694 NM_006649 "CCDS14615|CCDS55489" Q9BVJ6 "9610721|16354793|21078665" MGI:1919804 RGD:1359313 UTP14A 300508 +HGNC:20321 UTP14C UTP14, small subunit processome component homolog C (S. cerevisiae) protein-coding gene gene with protein product Approved 13q14.3 13q14.3 2700066J21Rik KIAA0266 "KIAA0266|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)" 2003-11-21 2004-06-16 2016-02-25 2016-10-05 9724 ENSG00000253797 OTTHUMG00000164353 uc058xgb.1 D87455 NM_021645 CCDS31978 Q5TAP6 "9039502|16354793" MGI:2445092 UTP14C 608969 +HGNC:25758 UTP15 UTP15, small subunit processome component protein-coding gene gene with protein product Approved 5q13.2 05q13.2 "FLJ12787|NET21|FLJ23637" "UTP15, U3 small nucleolar ribonucleoprotein, homolog (yeast)|UTP15, U3 small nucleolar ribonucleoprotein, homolog (S. cerevisiae)|UTP15 SSU processome component" WD repeat domain containing 362 2005-08-08 2016-02-25 2016-02-25 84135 ENSG00000164338 OTTHUMG00000162453 uc003kcw.3 AL831972 NM_032175 "CCDS34186|CCDS68893|CCDS68894" Q8TED0 "24219289|24754225" MGI:2145443 RGD:1310992 UTP15 616194 +HGNC:24274 UTP18 UTP18, small subunit processome component protein-coding gene gene with protein product Approved 17q21.33 17q21.33 CGI-48 WDR50 "WD repeat domain 50|UTP18 small subunit (SSU) processome component homolog (yeast)" "WD repeat domain containing|UTPB complex" "362|1225" 2005-02-01 2006-05-16 2016-02-25 2016-02-25 51096 ENSG00000011260 OTTHUMG00000162370 uc002its.4 AF151806 NM_016001 CCDS42362 Q9Y5J1 "10810093|8619474|15590835" MGI:1923402 RGD:1309957 UTP18 612816 +HGNC:17897 UTP20 UTP20, small subunit processome component protein-coding gene gene with protein product Approved 12q23 12q23 "DRIM|1A6/DRIM" down regulated in metastasis UTP20, small subunit (SSU) processome component, homolog (yeast) 2006-02-10 2016-02-25 2016-02-25 27340 ENSG00000120800 OTTHUMG00000170270 uc001tia.2 AJ006778 NM_014503 CCDS9081 O75691 "9673349|15590835|17498821" MGI:1917933 RGD:1560606 UTP20 612822 +HGNC:28224 UTP23 UTP23, small subunit processome component protein-coding gene gene with protein product Approved 8q24.11 08q24.11 MGC14595 C8orf53 "chromosome 8 open reading frame 53|UTP23, small subunit (SSU) processome component, homolog (yeast)" 2005-08-16 2008-06-12 2015-12-11 2015-12-11 84294 ENSG00000147679 OTTHUMG00000164958 uc003yoc.4 NM_032334 CCDS6320 Q9BRU9 "16769905|22180534" MGI:1925831 RGD:1307179 UTP23 +HGNC:12635 UTRN utrophin protein-coding gene gene with protein product Approved 6q24.2 06q24.2 "DRP|DRP1" DMDL utrophin (homologous to dystrophin) Zinc fingers ZZ-type 91 1989-06-30 2006-12-13 2016-10-05 7402 ENSG00000152818 OTTHUMG00000015746 uc003qkt.4 AK023675 XM_011536102 CCDS34547 P46939 1426262 MGI:104631 RGD:3947 UTRN 128240 +HGNC:12636 UTS2 urotensin 2 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 "UII|U-II|UCN2|PRO1068" prepro U-II Endogenous ligands 542 2000-03-22 2016-10-05 10911 ENSG00000049247 OTTHUMG00000001218 uc001aos.4 AF104118 NM_006786 "CCDS90|CCDS91" O95399 "9861051|10499587" MGI:1346329 RGD:3930 UTS2 604097 +HGNC:30894 UTS2B urotensin 2B protein-coding gene gene with protein product Approved 3q28 03q28 "URP|U2B" prepro-URP UTS2D urotensin 2 domain containing Endogenous ligands 542 2005-02-25 2013-02-28 2013-02-28 2014-11-19 257313 ENSG00000188958 OTTHUMG00000156192 uc003fsu.4 AB116021 NM_198152 CCDS3300 Q765I0 14550283 MGI:2677064 RGD:727977 +HGNC:4468 UTS2R urotensin 2 receptor protein-coding gene gene with protein product Approved 17q25.3 17q25.3 GPR14 G protein-coupled receptor 14 1995-08-10 2004-07-13 2004-07-13 2014-11-19 2837 ENSG00000181408 OTTHUMG00000178835 uc010wvl.3 AF140631 NM_018949 CCDS11810 Q9UKP6 "8666380|10499587" MGI:2183450 RGD:621884 UTS2R 600896 objectId:365 +HGNC:12638 UTY ubiquitously transcribed tetratricopeptide repeat containing, Y-linked protein-coding gene gene with protein product Approved Yq11.221 Yq11.221 KDM6AL "ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome|ubiquitously transcribed tetratricopeptide repeat gene, Y-linked" "Tetratricopeptide repeat domain containing|Minor histocompatibility antigens" "769|870" 1998-08-05 2012-11-15 2015-09-03 7404 ENSG00000183878 OTTHUMG00000036319 uc004fsx.3 AF000994 NM_182660 "CCDS14783|CCDS14784|CCDS14785|CCDS59184|CCDS76073|CCDS76074|CCDS76075|CCDS76076|CCDS76077|CCDS76078|CCDS76079|CCDS59185" O14607 "8944031|9499428" MGI:894810 UTY 400009 +HGNC:12640 UVRAG UV radiation resistance associated protein-coding gene gene with protein product Approved 11q13.5 11q13.5 VPS38 beclin 1 binding protein UV radiation resistance associated gene C2 domain containing 823 1997-01-10 2012-11-15 2016-10-05 7405 ENSG00000198382 OTTHUMG00000165319 uc001oxc.4 "X99050|AB012958" NM_003369 CCDS8241 Q9P2Y5 "9169138|16799551|18843052" MGI:1925860 RGD:1589754 UVRAG 602493 +HGNC:29304 UVSSA UV stimulated scaffold protein A protein-coding gene gene with protein product Approved 4p16.3 04p16.3 KIAA1530 KIAA1530 2007-12-12 2012-04-27 2015-11-13 2015-11-13 57654 ENSG00000163945 OTTHUMG00000160167 uc003gde.5 BC021930 NM_020894 CCDS33938 Q2YD98 "10819331|22466610|22466611|22466612" MGI:1918351 RGD:1306371 614632 302946 +HGNC:17729 UXS1 UDP-glucuronate decarboxylase 1 protein-coding gene gene with protein product Approved 2q12.2 02q12.2 "FLJ23591|UGD|SDR6E1" short chain dehydrogenase/reductase family 6E, member 12 Short chain dehydrogenase/reductase superfamily 743 2002-05-01 2015-08-26 80146 ENSG00000115652 OTTHUMG00000153150 uc002tdm.4 AK027244 NM_025076.3 "CCDS46378|CCDS58720|CCDS58721" Q8NBZ7 19027726 MGI:1915133 RGD:628680 UXS1 609749 4.1.1.35 +HGNC:12641 UXT ubiquitously expressed prefoldin like chaperone protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "ART-27|STAP1" "androgen receptor trapped clone 27|SKP2-associated alpha PFD 1" "ubiquitously-expressed transcript|ubiquitously-expressed, prefoldin-like chaperone" Prefoldin subunits 956 1998-09-03 2015-11-10 2016-10-05 8409 ENSG00000126756 OTTHUMG00000021453 uc004din.4 AF092737 NM_153477 "CCDS14284|CCDS14285" Q9UBK9 "10087202|16221885" MGI:1277988 RGD:1359326 UXT 300234 +HGNC:49239 UXT-AS1 UXT antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp11.23 Xp11.23 2013-10-11 2013-10-11 100133957 ENSG00000267064 OTTHUMG00000180159 NR_028119 +HGNC:25507 VAC14 Vac14, PIKFYVE complex component protein-coding gene gene with protein product Approved 16q22.1-q22.2 16q22.1-q22.2 "FLJ10305|ArPIKfyve" TAX1BP2 "Tax1 (human T-cell leukemia virus type I) binding protein 2|Vac14 homolog (S. cerevisiae)" 2005-02-09 2016-03-31 2016-10-11 55697 ENSG00000103043 OTTHUMG00000137583 uc002ezm.4 AK056433 NM_018052 CCDS10896 Q08AM6 "15542851|12719380" MGI:2157980 RGD:631410 VAC14 604632 +HGNC:48605 VAC14-AS1 VAC14 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16q22.1 16q22.1 2013-05-24 2016-10-05 100130894 ENSG00000214353 OTTHUMG00000177027 "AK095020|DB487352" NR_034083 +HGNC:12642 VAMP1 vesicle associated membrane protein 1 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 VAMP-1 SYB1 synaptobrevin 1 Vesicle associated membrane proteins 12 1990-03-14 2015-11-05 2016-10-05 6843 ENSG00000139190 OTTHUMG00000168269 uc001qok.4 NM_014231 "CCDS31731|CCDS41740|CCDS44809|CCDS73422" P23763 1976629 MGI:1313276 RGD:3948 VAMP1 185880 314894 +HGNC:12643 VAMP2 vesicle associated membrane protein 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 VAMP-2 SYB2 synaptobrevin 2 Vesicle associated membrane proteins 12 1990-03-14 2015-11-05 2015-11-05 6844 ENSG00000220205 OTTHUMG00000150254 uc010cnt.2 XM_005256775 "CCDS32561|CCDS82064" P63027 1976629 MGI:1313277 RGD:3949 VAMP2 185881 +HGNC:12644 VAMP3 vesicle associated membrane protein 3 protein-coding gene gene with protein product Approved 1p36.23 01p36.23 CEB cellubrevin Vesicle associated membrane proteins 12 1999-07-22 2015-11-05 2015-11-05 9341 ENSG00000049245 OTTHUMG00000001225 uc001aol.3 BC003570 NM_004781 CCDS88 Q15836 9885218 MGI:1321389 RGD:61880 VAMP3 603657 +HGNC:12645 VAMP4 vesicle associated membrane protein 4 protein-coding gene gene with protein product Approved 1q24.3 01q24.3 Vesicle associated membrane proteins 12 1998-11-30 2015-11-05 2016-10-05 8674 ENSG00000117533 OTTHUMG00000034788 uc001ghx.3 AF044310 NM_003762 "CCDS1298|CCDS53430" O75379 9553086 MGI:1858730 RGD:1309753 VAMP4 606909 +HGNC:12646 VAMP5 vesicle associated membrane protein 5 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 myobrevin Vesicle associated membrane proteins 12 1999-07-22 2015-11-05 2015-11-05 10791 ENSG00000168899 OTTHUMG00000130169 uc002spu.2 AF054825 NM_006634 CCDS1980 O95183 9725904 MGI:1858622 RGD:620419 VAMP5 607029 +HGNC:11486 VAMP7 vesicle associated membrane protein 7 protein-coding gene gene with protein product Approved Xq28 and Yq12 Xq28 and Yq12 "VAMP-7|TI-VAMP" SYBL1 synaptobrevin-like 1 "Vesicle associated membrane proteins|Pseudoautosomal region 2" "12|716" 1996-06-21 2007-12-05 2015-11-05 2015-11-05 6845 ENSG00000124333 OTTHUMG00000022679 uc004fxj.4 AJ295938 NM_005638 "CCDS14770|CCDS48199|CCDS55548" P51809 "8640232|11440841" MGI:1096399 RGD:621558 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=VAMP7 VAMP7 300053 410540 +HGNC:12647 VAMP8 vesicle associated membrane protein 8 protein-coding gene gene with protein product Approved 2p11.2 02p11.2 EDB endobrevin Vesicle associated membrane proteins 12 1998-11-30 2015-11-05 2016-10-05 8673 ENSG00000118640 OTTHUMG00000130180 uc002spt.5 AF053233 NM_003761 CCDS1979 Q9BV40 "9878266|9614193" MGI:1336882 RGD:620421 VAMP8 603177 +HGNC:15512 VANGL1 VANGL planar cell polarity protein 1 protein-coding gene gene with protein product Approved 1p13.1 01p13.1 STB2 "vang (van gogh, Drosophila)-like 1, vang, van gogh-like 1 (Drosophila)|vang-like 1 (van gogh, Drosophila)" 2001-04-06 2013-03-05 2014-11-19 81839 ENSG00000173218 OTTHUMG00000011971 uc001efv.1 AB075805 NM_001172411 "CCDS883|CCDS53350" Q8TAA9 "11956595|12011995" MGI:2159344 RGD:1597324 VANGL1 610132 138557 +HGNC:15511 VANGL2 VANGL planar cell polarity protein 2 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 "KIAA1215|LTAP|LPP1|STBM|STB1|STBM1|MGC119403|MGC119404" "vang, van gogh-like 2|loop-tail-associated protein|strabismus" "vang (van gogh, Drosophila)-like 2, vang, van gogh-like 2 (Drosophila)|vang-like 2 (van gogh, Drosophila)" 2001-04-06 2013-03-05 2016-01-15 57216 ENSG00000162738 OTTHUMG00000033122 uc001fwc.3 AB033041 NM_020335 CCDS30915 Q9ULK5 11431695 MGI:2135272 RGD:1309442 VANGL2 600533 283988 +HGNC:12648 VAPA VAMP associated protein A protein-coding gene gene with protein product Approved 18p11.22 18p11.22 "hVAP-33|VAP-A" "VAMP (vesicle-associated membrane protein)-associated protein A (33kD)|VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa" 1999-03-19 2015-11-09 2016-10-05 9218 ENSG00000101558 OTTHUMG00000131603 uc002kok.4 XM_011525769 "CCDS11847|CCDS11848" Q9P0L0 "9920726|9657962" MGI:1353561 RGD:61803 VAPA 605703 +HGNC:12649 VAPB VAMP associated protein B and C protein-coding gene gene with protein product Approved 20q13.32 20q13.32 "VAP-B|VAP-C|ALS8" VAMP (vesicle-associated membrane protein)-associated protein B and C 1999-03-19 2016-06-17 2016-10-12 9217 ENSG00000124164 OTTHUMG00000032840 uc002xza.4 AF086628 XR_001754433 "CCDS33498|CCDS56198" O95292 9920726 MGI:1928744 RGD:68326 "ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/|LRG_656|http://www.lrg-sequence.org/LRG/LRG_656" VAPB 605704 120453 +HGNC:12651 VARS valyl-tRNA synthetase protein-coding gene gene with protein product Approved 6p21.33 06p21.33 valine tRNA ligase 1, cytoplasmic VARS2 valyl-tRNA synthetase 2 Aminoacyl tRNA synthetases, Class I 131 1991-08-18 2005-07-05 2016-10-05 7407 ENSG00000204394 OTTHUMG00000031286 uc011gfl.3 BC012808 NM_006295 CCDS34412 P26640 15779907 MGI:90675 RGD:3950 VARS 192150 6.1.1.9 +HGNC:12650 VARS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-02 +HGNC:21642 VARS2 valyl-tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "DKFZP434L1435|KIAA1885|G7a" valine tRNA ligase 2, mitochondrial "VARS2L|VARSL" "valyl-tRNA synthetase 2-like|valyl-tRNA synthetase like|valyl-tRNA synthetase 2, mitochondrial (putative)" Aminoacyl tRNA synthetases, Class I 131 2003-07-02 2007-02-23 2012-10-26 2014-11-19 57176 ENSG00000137411 OTTHUMG00000031263 uc003nsc.3 AB067472 NM_020442 "CCDS34387|CCDS54980|CCDS54981" Q5ST30 "1898367|11572484|18400783" MGI:1916165 RGD:1303122 VARS2 612802 432047 6.1.1.9 +HGNC:19964 VASH1 vasohibin 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 KIAA1036 KIAA1036 2003-11-21 2005-08-16 2005-08-16 2015-07-22 22846 ENSG00000071246 OTTHUMG00000171493 uc001xst.3 AB028959 NM_014909 CCDS9851 Q7L8A9 MGI:2442543 RGD:1564082 VASH1 609011 +HGNC:25723 VASH2 vasohibin 2 protein-coding gene gene with protein product Approved 1q32.3 01q32.3 FLJ12505 2006-07-04 2016-10-05 79805 ENSG00000143494 OTTHUMG00000036925 uc001hjw.4 AK022567 NM_024749 "CCDS1511|CCDS44315|CCDS44316|CCDS73026" Q86V25 16528006 MGI:2444826 RGD:1564105 VASH2 610471 +HGNC:18517 VASN vasorin protein-coding gene gene with protein product Approved 16p13.3 16p13.3 SLITL2 slit-like 2 (Drosophila) 2005-01-26 2006-03-30 2006-03-30 2014-11-19 114990 ENSG00000168140 OTTHUMG00000129469 uc002cwj.1 AY358299 NM_138440 CCDS10514 Q6EMK4 15247411 MGI:2177651 RGD:1598149 VASN 608843 +HGNC:12652 VASP vasodilator-stimulated phosphoprotein protein-coding gene gene with protein product Approved 19q13.32 19q13.32 ENAH/VASPs 946 1996-06-07 2014-11-19 7408 ENSG00000125753 OTTHUMG00000182124 uc002pcg.4 XM_017027200 CCDS33051 P50552 8812448 MGI:109268 RGD:1311542 VASP 601703 +HGNC:16919 VAT1 vesicle amine transport 1 protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "VATI|FLJ20230" vesicle amine transport protein 1 homolog (T. californica) 2002-08-15 2013-08-23 2015-07-22 10493 ENSG00000108828 OTTHUMG00000180816 uc002icm.2 U18009 NM_006373 CCDS11451 Q99536 "7774926|8938427" MGI:1349450 RGD:1308943 VAT1 604631 +HGNC:29315 VAT1L vesicle amine transport 1 like protein-coding gene gene with protein product Approved 16q23.1 16q23.1 KIAA1576 "vesicle amine transport protein 1 homolog (T. californica)-like|vesicle amine transport 1-like" 2008-09-15 2016-07-19 2016-07-19 57687 ENSG00000171724 OTTHUMG00000176845 uc002ffg.2 AB046796 NM_020927 CCDS32492 Q9HCJ6 10997877 MGI:2142534 RGD:1598315 VAT1L +HGNC:12657 VAV1 vav guanine nucleotide exchange factor 1 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 VAV "vav 1 oncogene|vav 1 guanine nucleotide exchange factor" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|SH2 domain containing" "682|722|741" 1991-03-04 2015-11-27 2015-11-27 7409 ENSG00000141968 OTTHUMG00000181965 uc010xjh.3 NM_005428 "CCDS12174|CCDS59341|CCDS59342" P15498 9438848 MGI:98923 RGD:3951 VAV1 164875 +HGNC:12658 VAV2 vav guanine nucleotide exchange factor 2 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "vav 2 oncogene|vav 2 guanine nucleotide exchange factor" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|SH2 domain containing" "682|722|741" 1994-07-15 2015-11-27 2016-10-05 7410 ENSG00000160293 OTTHUMG00000020882 uc004cer.4 XM_017015108 "CCDS6979|CCDS48053" P52735 7762982 MGI:102718 RGD:1306285 VAV2 600428 +HGNC:12659 VAV3 vav guanine nucleotide exchange factor 3 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 "vav 3 oncogene|vav 3 guanine nucleotide exchange factor" "Pleckstrin homology domain containing|Rho guanine nucleotide exchange factors|SH2 domain containing" "682|722|741" 1999-07-07 2015-11-27 2015-11-27 10451 ENSG00000134215 OTTHUMG00000010995 uc001dvk.2 AF118886 NM_006113 "CCDS785|CCDS44181" Q9UKW4 MGI:1888518 RGD:1565941 VAV3 605541 +HGNC:40608 VAV3-AS1 VAV3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p13.3 01p13.3 VAV3 antisense RNA 1 (non-protein coding) 2012-02-24 2012-08-15 2014-11-19 100873946 ENSG00000230489 OTTHUMG00000010994 uc031pnj.1 "AA425131|BG193383" NR_046653 +HGNC:12660 VAX1 ventral anterior homeobox 1 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 NKL subclass homeoboxes and pseudogenes 519 1999-08-27 2016-10-05 11023 ENSG00000148704 OTTHUMG00000019117 uc009xyx.4 AK127095 XM_301242 "CCDS7597|CCDS44483" Q5SQQ9 "9636075|10485894" MGI:1277163 RGD:621132 VAX1 604294 8523 +HGNC:12661 VAX2 ventral anterior homeobox 2 protein-coding gene gene with protein product Approved 2p13.3 02p13.3 DRES93 NKL subclass homeoboxes and pseudogenes 519 1999-11-16 2014-11-19 25806 ENSG00000116035 OTTHUMG00000129714 uc002shh.4 Y17791 XM_006711982 CCDS1911 Q9UIW0 10485894 MGI:1346018 RGD:621133 VAX2 604295 8524 +HGNC:12662 VBP1 VHL binding protein 1 protein-coding gene gene with protein product Approved Xq28 Xq28 "PFD3|PFDN3" prefoldin 3 von Hippel-Lindau binding protein 1 Prefoldin subunits 956 1997-07-25 2016-05-20 2016-05-20 7411 ENSG00000155959 OTTHUMG00000022666 uc004fnc.4 U56833 NM_003372 "CCDS14765|CCDS78525" P61758 "8674032|9339366" MGI:1333804 RGD:1590535 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=VBP1 VBP1 300133 +HGNC:12663 VCAM1 vascular cell adhesion molecule 1 protein-coding gene gene with protein product Approved 1p21.2 01p21.2 CD106 "CD molecules|Endogenous ligands|C2-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "471|542|592|593|594" 1991-07-10 2016-10-05 7412 ENSG00000162692 OTTHUMG00000010982 uc001dti.5 M60335 NM_001078 "CCDS773|CCDS774|CCDS55617" P19320 MGI:98926 RGD:3952 VCAM1 192225 CD106 +HGNC:2464 VCAN versican protein-coding gene gene with protein product Approved 5q14.2-q14.3 05q14.2-q14.3 PG-M versican proteoglycan CSPG2 chondroitin sulfate proteoglycan 2 "Hyalectan proteoglycans|V-set domain containing|Sushi domain containing|C-type lectin domain containing" "574|590|1179|1298" 1991-07-18 2007-02-15 2007-02-15 2016-10-11 1462 ENSG00000038427 OTTHUMG00000131321 uc003kii.4 X15998 NM_004385 "CCDS4060|CCDS47242|CCDS54875|CCDS54876" P13611 "1478664|21063030" MGI:102889 RGD:619940 VCAN 118661 120457 +HGNC:40163 VCAN-AS1 VCAN antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q14.3 05q14.3 VCAN antisense RNA 1 (non-protein coding) 2011-08-23 2012-08-15 2014-11-19 100873929 ENSG00000249835 OTTHUMG00000162571 uc063fbx.1 +HGNC:12665 VCL vinculin protein-coding gene gene with protein product Approved 10q22.2 10q22.2 metavinculin 1990-09-10 2016-10-12 7414 ENSG00000035403 OTTHUMG00000018498 uc001jwd.4 M33308 "NM_003373|NM_014000" "CCDS7340|CCDS7341" P18206 1339348 MGI:98927 RGD:1311217 LRG_383|http://www.lrg-sequence.org/LRG/LRG_383 VCL 193065 159087 +HGNC:12666 VCP valosin containing protein protein-coding gene gene with protein product Approved 9p13.3 09p13.3 "IBMPFD|p97" valosin-containing protein AAA ATPases 413 1996-08-22 2011-01-25 2016-10-12 7415 ENSG00000165280 OTTHUMG00000019855 uc003zvy.3 AC004472 NM_007126 CCDS6573 P55072 "8595912|7553851" MGI:99919 RGD:621595 LRG_657|http://www.lrg-sequence.org/LRG/LRG_657 VCP 601023 120461 +HGNC:30897 VCPIP1 valosin containing protein interacting protein 1 protein-coding gene gene with protein product Approved 8q13.1 08q13.1 "VCIP135|KIAA1850|FLJ23132|DUBA3" valosin containing protein (p97)/p47 complex interacting protein 1 OTU domain containing 669 2005-02-22 2016-05-23 2016-10-05 80124 ENSG00000175073 OTTHUMG00000164560 uc003xwn.4 AB058753 NM_025054 CCDS6192 Q96JH7 "11347906|12509440" MGI:1917925 RGD:708520 VCPIP1 611745 C64.006 +HGNC:20352 VCPKMT valosin containing protein lysine methyltransferase protein-coding gene gene with protein product Approved 14q21.3 14q21.3 VCP-KMT "C14orf138|METTL21D" "chromosome 14 open reading frame 138|methyltransferase like 21D|valosin containing protein lysine (K) methyltransferase" Methyltransferase like 963 2003-01-28 2013-09-30 2016-01-05 2016-01-05 79609 ENSG00000100483 OTTHUMG00000029531 AK023982 NM_024558 "CCDS9696|CCDS41951" Q9H867 22948820 MGI:2684917 RGD:7565188 615260 +HGNC:12667 VCX variable charge, X-linked protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 "VCX1|VCX10R|VCX-10r|VCX-B1" variable charge, X chromosome Variable charge X/Y family 368 2000-03-03 2003-09-12 2014-11-18 26609 ENSG00000182583 OTTHUMG00000028608 uc004crz.3 AF167081 NM_013452 CCDS14128 Q9H320 "10607842|10903929" VCX 300229 +HGNC:18158 VCX2 variable charge, X-linked 2 protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 "VCX-2r|VCX-2R" Variable charge X/Y family 368 2004-04-16 2016-10-05 51480 ENSG00000177504 OTTHUMG00000021105 uc004csb.3 AF159127 NM_016378 CCDS35200 Q9H322 10607842 VCX2 300532 +HGNC:18159 VCX3A variable charge, X-linked 3A protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 "VCX-8r|VCX-8R|VCX-A" VCX3 variable charge, X-linked 3 Variable charge X/Y family 368 2004-04-16 2005-01-12 2005-01-11 2014-11-19 51481 ENSG00000169059 OTTHUMG00000021097 uc004crs.3 AF159128 NM_016379 CCDS35199 Q9NNX9 10607842 VCX3A 300533 +HGNC:31838 VCX3B variable charge, X-linked 3B protein-coding gene gene with protein product Approved Xp22.31 Xp22.31 VCX-C Variable charge X/Y family 368 2005-01-11 2016-04-25 425054 ENSG00000205642 OTTHUMG00000021106 uc011mht.3 NM_001001888 CCDS48077 Q9H321 VCX3B 300981 +HGNC:12668 VCY variable charge, Y-linked protein-coding gene gene with protein product Approved Yq11.221 Yq11.221 "BPY1|VCY1A|VCY1" variable charge, Y chromosome Variable charge X/Y family 368 1999-04-27 2003-09-12 2014-11-19 9084 ENSG00000129864 OTTHUMG00000036401 uc004ftc.4 AF000979 NM_004679 CCDS56617 O14598 9381176 VCY 400012 +HGNC:31751 VCY1B variable charge, Y-linked 1B protein-coding gene gene with protein product Approved Yq11.221 Yq11.221 BPY1B Variable charge X/Y family 368 2004-07-15 2014-11-19 353513 ENSG00000129862 OTTHUMG00000036402 uc004ftd.4 BC056508 NM_181880 CCDS56618 O14598 VCY1B +HGNC:12669 VDAC1 voltage dependent anion channel 1 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 "MGC111064|PORIN" Voltage dependent anion channels 306 1993-11-02 2016-01-14 2016-10-05 7416 ENSG00000213585 OTTHUMG00000129118 uc003kyr.3 XM_005272075 CCDS4168 P21796 7517385 MGI:106919 RGD:621575 VDAC1 604492 +HGNC:12671 VDAC1P1 voltage dependent anion channel 1 pseudogene 1 pseudogene pseudogene Approved Xq21.1 Xq21.1 VDAC1P voltage-dependent anion channel 1 pseudogene 1999-05-21 2009-10-23 2016-01-14 2016-01-14 642585 ENSG00000073905 OTTHUMG00000021909 AJ002428 NG_001224 7517385 PGOHUM00000241872 +HGNC:12670 VDAC1P2 voltage dependent anion channel 1 pseudogene 2 pseudogene pseudogene Approved Xp11.23 Xp11.23 VDAC1LP voltage-dependent anion channel 1-like pseudogene 1999-05-21 2009-10-23 2016-01-14 2016-01-14 10064 ENSG00000213856 OTTHUMG00000024151 AJ012218 NG_001223 7517385 PGOHUM00000241291 +HGNC:37478 VDAC1P3 voltage dependent anion channel 1 pseudogene 3 pseudogene pseudogene Approved Xq21.31 Xq21.31 2009-10-23 2016-01-14 2016-01-14 100310838 ENSG00000234702 OTTHUMG00000021963 NG_013287 PGOHUM00000304754 +HGNC:12675 VDAC1P4 voltage dependent anion channel 1 pseudogene 4 pseudogene pseudogene Approved 1q25.3 01q25.3 "VDAC4|VDAC4P" "voltage-dependent anion channel 4|voltage-dependent anion channel 4 pseudogene" 1994-04-18 2009-10-23 2016-01-14 2016-10-05 7418 ENSG00000235060 OTTHUMG00000035114 S75651 NG_007502 7517385 610030 PGOHUM00000245106 +HGNC:12676 VDAC1P5 voltage dependent anion channel 1 pseudogene 5 pseudogene pseudogene Approved 12q13.2 12q13.2 "VDAC3|VDAC5P" voltage-dependent anion channel 5, pseudogene 1994-04-18 2009-10-23 2016-01-14 2016-01-14 10187 ENSG00000270858 OTTHUMG00000169848 S75494 NG_000882 7517385 PGOHUM00000239465 +HGNC:37481 VDAC1P6 voltage dependent anion channel 1 pseudogene 6 pseudogene pseudogene Approved Yp11.2 Yp11.2 2009-10-23 2016-01-14 2016-01-14 359800 ENSG00000231341 OTTHUMG00000035151 NG_002825 PGOHUM00000305420 +HGNC:37482 VDAC1P7 voltage dependent anion channel 1 pseudogene 7 pseudogene pseudogene Approved 3p12.3 03p12.3 2009-10-23 2016-01-14 2016-01-14 100310839 ENSG00000213450 OTTHUMG00000158867 NG_013290 PGOHUM00000237665 +HGNC:37483 VDAC1P8 voltage dependent anion channel 1 pseudogene 8 pseudogene pseudogene Approved 6q24.2 06q24.2 2009-10-23 2016-01-14 2016-01-14 100310840 ENSG00000229036 OTTHUMG00000015727 NG_013291 PGOHUM00000243802 +HGNC:37484 VDAC1P9 voltage dependent anion channel 1 pseudogene 9 pseudogene pseudogene Approved 1q23.1 01q23.1 2009-10-23 2016-01-14 2016-01-14 391106 ENSG00000232366 OTTHUMG00000019397 NG_013292 PGOHUM00000295914 +HGNC:37479 VDAC1P10 voltage dependent anion channel 1 pseudogene 10 pseudogene pseudogene Approved 1q41 01q41 2009-10-23 2016-01-14 2016-01-14 643536 ENSG00000232809 OTTHUMG00000037013 NG_013293 PGOHUM00000245206 +HGNC:37480 VDAC1P11 voltage dependent anion channel 1 pseudogene 11 pseudogene pseudogene Approved 9q22.32 09q22.32 2009-10-23 2016-01-14 2016-01-14 100310841 ENSG00000237679 OTTHUMG00000020261 NG_013294 PGOHUM00000236268 +HGNC:39680 VDAC1P12 voltage dependent anion channel 1 pseudogene 12 pseudogene pseudogene Approved 13q13.2 13q13.2 2011-03-22 2016-01-14 2016-01-14 100874289 ENSG00000227254 OTTHUMG00000016717 NG_032346 PGOHUM00000248358 +HGNC:50515 VDAC1P13 voltage dependent anion channel 1 pseudogene 13 pseudogene pseudogene Approved 2p21 02p21 2014-05-16 2016-01-14 2016-01-14 100420568 ENSG00000232526 OTTHUMG00000152314 NG_023558 PGOHUM00000240022 +HGNC:12672 VDAC2 voltage dependent anion channel 2 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 Voltage dependent anion channels 306 1993-11-02 2016-01-14 2016-10-05 7417 ENSG00000165637 OTTHUMG00000018517 uc021ptp.3 BC000165 NM_003375 "CCDS7348|CCDS53544" P45880 "7517385|10049775" MGI:106915 RGD:621576 VDAC2 193245 +HGNC:12673 VDAC2P1 voltage dependent anion channel 2 pseudogene 1 pseudogene pseudogene Approved 21q21.1 21q21.1 VDAC2P voltage-dependent anion channel 2 pseudogene 2000-05-23 2009-10-23 2016-01-14 2016-01-14 54015 ENSG00000214976 OTTHUMG00000074376 NG_000899 PGOHUM00000297222 +HGNC:32693 VDAC2P2 voltage dependent anion channel 2 pseudogene 2 pseudogene pseudogene Approved 12p13.31 12p13.31 2006-04-11 2016-01-14 2016-01-14 643996 ENSG00000255776 OTTHUMG00000168287 NG_021271 PGOHUM00000291534 +HGNC:51931 VDAC2P3 voltage dependent anion channel 2 pseudogene 3 pseudogene pseudogene Approved 1p12 01p12 2015-10-06 2016-01-14 2016-01-14 401959 ENSG00000213262 OTTHUMG00000013704 NG_021270 PGOHUM00000295805 +HGNC:51932 VDAC2P4 voltage dependent anion channel 2 pseudogene 4 pseudogene pseudogene Approved 2q21.3 02q21.3 2015-10-06 2016-01-14 2016-01-14 100420574 ENSG00000234682 OTTHUMG00000153732 NG_023731 PGOHUM00000298736 +HGNC:12674 VDAC3 voltage dependent anion channel 3 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 HD-VDAC3 Voltage dependent anion channels 306 1999-05-28 2016-01-14 2016-01-14 7419 ENSG00000078668 OTTHUMG00000164168 uc003xpc.4 AF038962 NM_001135694 "CCDS6131|CCDS47850" Q9Y277 "9653160|9781040" MGI:106922 RGD:621577 VDAC3 610029 +HGNC:20722 VDAC3P1 voltage dependent anion channel 3 pseudogene 1 pseudogene pseudogene Approved 14q32.2 14q32.2 VDAC3P voltage-dependent anion channel 3 pseudogene 2003-03-24 2009-10-23 2016-01-14 2016-01-14 341965 ENSG00000271198 OTTHUMG00000184603 NG_022864 PGOHUM00000248265 +HGNC:12678 VDI vesicular stomatitis virus defective interfering particle suppression phenotype phenotype only Approved 16 16 2001-06-22 2013-04-03 7420 6275129 125260 +HGNC:12679 VDR vitamin D (1,25- dihydroxyvitamin D3) receptor protein-coding gene gene with protein product Approved 12q13.11 12q13.11 "NR1I1|PPP1R163" protein phosphatase 1, regulatory subunit 163 "Nuclear hormone receptors|Protein phosphatase 1 regulatory subunits" "71|694" 1989-06-30 2015-07-22 7421 ENSG00000111424 OTTHUMG00000169890 uc058ndj.1 J03258 XM_011538720 "CCDS8757|CCDS55820" P11473 1662663 MGI:103076 RGD:3959 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ VDR 601769 120464 objectId:605 +HGNC:12680 VEGFA vascular endothelial growth factor A protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "VEGF-A|VPF" VEGF vascular endothelial growth factor VEGF family 1267 1994-01-10 2006-10-31 2006-10-31 2016-10-05 7422 ENSG00000112715 OTTHUMG00000014745 uc063oun.1 AB021221 NM_001025366 "CCDS34457|CCDS4907|CCDS34458|CCDS47432|CCDS47433|CCDS47434|CCDS47435|CCDS55007|CCDS55008|CCDS55009|CCDS55010|CCDS55011|CCDS55012|CCDS55013|CCDS55014|CCDS55015|CCDS69125" P15692 8786112 MGI:103178 RGD:619991 ALSOD, the Amyotrophic Lateral Sclerosis Online Genetic Database|http://alsod.iop.kcl.ac.uk/ VEGFA 192240 objectId:2644 +HGNC:12681 VEGFB vascular endothelial growth factor B protein-coding gene gene with protein product Approved 11q13.1 11q13.1 VEGFL VRF VEGF family 1267 1996-10-26 2015-07-22 7423 ENSG00000173511 OTTHUMG00000167813 uc001nyx.4 BC008818 NM_003377 "CCDS8062|CCDS58144" P49765 "8637916|8919691" MGI:106199 RGD:619799 VEGFB 601398 +HGNC:12682 VEGFC vascular endothelial growth factor C protein-coding gene gene with protein product Approved 4q34.3 04q34.3 VRP vascular endothelial growth factor-related protein VEGF family 1267 1996-10-26 2015-08-26 7424 ENSG00000150630 OTTHUMG00000160734 uc032ufc.2 BC035212 NM_005429 CCDS43285 P49767 8617204 MGI:109124 RGD:619800 VEGFC 601528 376917 +HGNC:3708 VEGFD vascular endothelial growth factor D protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 VEGF-D FIGF c-fos induced growth factor (vascular endothelial growth factor D) VEGF family 1267 1997-03-27 2016-05-23 2016-05-23 2016-10-05 2277 ENSG00000165197 OTTHUMG00000021175 uc004cwt.3 AJ000185 NM_004469 CCDS14166 O43915 9479493 MGI:108037 RGD:620695 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=FIGF 300091 +HGNC:13639 VENTX VENT homeobox protein-coding gene gene with protein product Approved 10q26.3 10q26.3 HPX42B VENTX2 "VENT-like homeobox 2|VENT homeobox homolog (Xenopus laevis)" NKL subclass homeoboxes and pseudogenes 519 2001-08-23 2005-09-27 2011-06-01 2014-11-18 27287 ENSG00000151650 OTTHUMG00000019307 uc010quy.3 AF068006 NM_014468 CCDS7675 O95231 10790436 VENTX 607158 8558 +HGNC:30900 VENTXP1 VENT homeobox pseudogene 1 pseudogene pseudogene Approved Xp21.3 Xp21.3 "NA88A|CT18" "tumor antigen NA88A|cancer/testis antigen 18" VENT homeobox (Xenopus laevis) pseudogene 1 NKL subclass homeoboxes and pseudogenes 519 2005-09-27 2011-06-01 2012-10-04 139538 ENSG00000259849 OTTHUMG00000175433 uc004dbs.3 AF164963 NR_001559 P0C5K6 8402 +HGNC:30901 VENTXP2 VENT homeobox pseudogene 2 pseudogene pseudogene Approved 13q31.1 13q31.1 VENT homeobox (Xenopus laevis) pseudogene 2 NKL subclass homeoboxes and pseudogenes 519 2005-09-27 2011-06-01 2014-11-19 100287345 ENSG00000215037 OTTHUMG00000017150 NG_002909 8403 PGOHUM00000248448 +HGNC:30902 VENTXP3 VENT homeobox pseudogene 3 pseudogene pseudogene Approved 12q21.1 12q21.1 VENT homeobox (Xenopus laevis) pseudogene 3 NKL subclass homeoboxes and pseudogenes 519 2005-09-27 2011-06-01 2011-06-20 349814 ENSG00000257364 OTTHUMG00000169694 NG_002911 8404 PGOHUM00000239855 +HGNC:30903 VENTXP4 VENT homeobox pseudogene 4 pseudogene pseudogene Approved 3p24.1 03p24.1 VENT homeobox (Xenopus laevis) pseudogene 4 NKL subclass homeoboxes and pseudogenes 519 2005-09-27 2011-06-01 2016-10-05 152101 ENSG00000230465 OTTHUMG00000155613 NG_002906 8405 PGOHUM00000237560 +HGNC:32214 VENTXP5 VENT homeobox pseudogene 5 pseudogene pseudogene Approved 8p12 08p12 VENT homeobox (Xenopus laevis) pseudogene 5 NKL subclass homeoboxes and pseudogenes 519 2005-09-27 2011-06-01 2011-06-20 442384 ENSG00000253569 OTTHUMG00000163947 NG_005091 8406 PGOHUM00000249291 +HGNC:32216 VENTXP6 VENT homeobox pseudogene 6 pseudogene pseudogene Approved 8q21.11 08q21.11 VENT homeobox (Xenopus laevis) pseudogene 6 NKL subclass homeoboxes and pseudogenes 519 2005-09-27 2011-06-01 2011-06-20 552879 ENSG00000254105 OTTHUMG00000164572 NG_005090 8407 PGOHUM00000249712 +HGNC:13638 VENTXP7 VENT homeobox pseudogene 7 pseudogene pseudogene Approved 3p24.3 03p24.3 HPX42 VENTX1 "VENT-like homeobox 1|VENT homeobox (Xenopus laevis) pseudogene 7" NKL subclass homeoboxes and pseudogenes 519 2004-11-26 2005-09-27 2011-06-01 2014-11-18 391518 ENSG00000236380 OTTHUMG00000155442 X74864 NR_002311 11549314 8408 PGOHUM00000237957 +HGNC:25735 VEPH1 ventricular zone expressed PH domain containing 1 protein-coding gene gene with protein product Approved 3q25.31-q25.32 03q25.31-q25.32 "FLJ12604|KIAA1692" ventricular zone expressed PH domain homolog 1 (zebrafish) Pleckstrin homology domain containing 682 2005-01-24 2015-11-11 2016-10-11 79674 ENSG00000197415 OTTHUMG00000158711 uc003fbk.3 AL713656 NM_024621 "CCDS3179|CCDS54661|CCDS54662|CCDS54663" Q14D04 "11214970|15388229" MGI:1920039 RGD:1308217 VEPH1 609594 +HGNC:12949 VEZF1 vascular endothelial zinc finger 1 protein-coding gene gene with protein product Approved 17q22 17q22 DB1 ZNF161 zinc finger protein 161 Zinc fingers C2H2-type 28 1994-09-28 2006-08-16 2006-08-16 2015-08-26 7716 ENSG00000136451 OTTHUMG00000178777 uc002ivf.2 D28118 XM_005257644 "CCDS32687|CCDS82169" Q14119 8035792 MGI:1313291 RGD:1308058 VEZF1 606747 +HGNC:32320 VEZF1P1 vascular endothelial zinc finger 1 pseudogene 1 pseudogene pseudogene Approved 3q29 03q29 "ZNF161L1|VEZF1L1" "zinc finger protein 161-like 1|vascular endothelial zinc finger 1-like 1" 2005-10-04 2011-07-07 2011-07-07 2011-07-07 647319 ENSG00000236229 OTTHUMG00000156103 NG_006550 PGOHUM00000237903 +HGNC:18258 VEZT vezatin, adherens junctions transmembrane protein protein-coding gene gene with protein product Approved 12q22 12q22 DKFZP761C241 2006-01-27 2014-11-19 55591 ENSG00000028203 OTTHUMG00000170182 uc001tdz.2 AF216644 NM_017599 CCDS44954 Q9HBM0 "11080149|16199027|21156161" MGI:2143698 RGD:1359117 VEZT +HGNC:12684 VGF VGF nerve growth factor inducible protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "SCG7|SgVII" neuro-endocrine specific protein VGF Granins 925 1997-07-22 2016-10-05 7425 ENSG00000128564 OTTHUMG00000157109 uc003uxx.5 Y12661 NM_003378 CCDS5712 O15240 9344675 MGI:1343180 RGD:69399 VGF 602186 +HGNC:20985 VGLL1 vestigial like family member 1 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "TONDU|TDU" "vestigial like 1 (Drosophila)|vestigial-like family member 1" Vestigial like family 367 2003-04-30 2015-11-23 2015-11-23 51442 ENSG00000102243 OTTHUMG00000022509 uc004ezy.3 AF137387 NM_016267 CCDS14658 Q99990 10518497 MGI:2655768 RGD:1564038 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=VGLL1 VGLL1 300583 +HGNC:20232 VGLL2 vestigial like family member 2 protein-coding gene gene with protein product Approved 6q22.1 06q22.1 "vestigial like 2 (Drosophila)|vestigial-like family member 2" Vestigial like family 367 2003-04-30 2015-11-23 2016-10-05 245806 ENSG00000170162 OTTHUMG00000015451 uc003pxn.4 AY056583 NM_153453 "CCDS5114|CCDS5115" Q8N8G2 12376544 MGI:2447460 RGD:1311903 VGLL2 609979 +HGNC:24327 VGLL3 vestigial like family member 3 protein-coding gene gene with protein product Approved 3p12.1 03p12.1 VGL-3 "vestigial like 3 (Drosophila)|vestigial-like family member 3" Vestigial like family 367 2005-12-30 2015-11-23 2015-11-23 389136 ENSG00000206538 OTTHUMG00000158984 uc003dqn.4 AF099505 NM_016206 "CCDS43110|CCDS82807" A8MV65 12376544 MGI:1920819 RGD:1560030 VGLL3 609980 +HGNC:28966 VGLL4 vestigial like family member 4 protein-coding gene gene with protein product Approved 3p25.3-p25.2 03p25.3-p25.2 KIAA0121 "vestigial like 4 (Drosophila)|vestigial-like family member 4" Vestigial like family 367 2004-06-03 2015-11-23 2016-10-11 9686 ENSG00000144560 OTTHUMG00000129739 uc010hdx.3 D50911 NM_014667 "CCDS2606|CCDS46754|CCDS46755|CCDS46756|CCDS68342|CCDS68343" Q14135 "8590280|15140898" MGI:2652840 RGD:1311653 VGLL4 +HGNC:12687 VHL von Hippel-Lindau tumor suppressor protein-coding gene gene with protein product Approved 3p25.3 03p25.3 VHL1 "von Hippel-Lindau syndrome|von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase" 1986-01-01 2016-03-02 2016-10-12 7428 ENSG00000134086 OTTHUMG00000128668 uc003bvc.4 L15409 NM_000551 "CCDS2597|CCDS2598" P40337 9671762 MGI:103223 RGD:3960 "UMD Locus Specific Databases|http://www.umd.be/|LRG_322|http://www.lrg-sequence.org/LRG/LRG_322" VHL 608537 120467 +HGNC:30666 VHLL von Hippel-Lindau tumor suppressor like protein-coding gene gene with protein product Approved 1q22 01q22 VLP VHLP VHL pseudogene 2004-09-02 2016-03-02 2016-03-02 391104 ENSG00000189030 OTTHUMG00000024058 uc001fok.4 NM_001004319 Q6RSH7 14757845 VHLL +HGNC:12690 VIL1 villin 1 protein-coding gene gene with protein product Approved 2q35 02q35 D2S1471 VIL Gelsolin/villins 950 2001-06-22 2014-11-19 7429 ENSG00000127831 OTTHUMG00000133112 uc002via.4 X12901 NM_007127 CCDS2417 P09327 2846586 MGI:98930 RGD:1307048 VIL1 193040 +HGNC:30906 VILL villin like protein-coding gene gene with protein product Approved 3p22.2 03p22.2 Gelsolin/villins 950 2004-07-28 2016-06-30 2016-10-05 50853 ENSG00000136059 OTTHUMG00000130814 uc003chj.4 NM_015873 CCDS2670 O15195 9179494 MGI:1201781 RGD:1304843 VILL +HGNC:12692 VIM vimentin protein-coding gene gene with protein product Approved 10p13 10p13 Intermediate filaments Type III 610 2001-06-22 2015-08-26 7431 ENSG00000026025 OTTHUMG00000017744 uc001iou.3 M14144 NM_003380 CCDS7120 P08670 MGI:98932 RGD:621646 VIM 193060 233060 HGNC:12692 +HGNC:44879 VIM-AS1 VIM antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p13 10p13 2012-12-11 2012-12-11 100507347 ENSG00000229124 OTTHUMG00000017743 uc001iot.3 BC078172 NR_108060 +HGNC:43891 VIM2P vimentin 2, pseudogene pseudogene pseudogene Approved 6q22.32 06q22.32 "lncRNA-CIR|RP11-162L10.1|VIM2" long non-coding RNA, cartilage injury-related VIMP1 "vimentin pseudogene 1|vimentin 2, pseudogene (functional)" Transcribed pseudogenes with published function 859 2012-04-23 2014-06-27 2016-01-29 2016-03-24 100130535 ENSG00000220548 OTTHUMG00000015519 NG_022326 24757148 PGOHUM00000243352 +HGNC:12693 VIP vasoactive intestinal peptide protein-coding gene gene with protein product Approved 6q25.2 06q25.2 prepro-VIP Endogenous ligands 542 2001-06-22 2016-10-05 7432 ENSG00000146469 OTTHUMG00000015851 uc003qpe.6 XM_006715562 "CCDS5240|CCDS5241" P01282 MGI:98933 RGD:621647 VIP 192320 +HGNC:20347 VIPAS39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "VIPAR|VPS16B|SPE-39|SPE39|hSPE-39" VPS33B interacting protein, apical-basolateral polarity regulator C14orf133 chromosome 14 open reading frame 133 2003-01-28 2012-07-24 2012-07-24 2016-10-12 63894 ENSG00000151445 OTTHUMG00000171538 uc001xtu.3 AK022925 NM_022067 "CCDS9862|CCDS53905" Q9H9C1 "20190753|19109425|22753090|23002115|23918659" MGI:2144805 RGD:1589291 LRG_1019|http://www.lrg-sequence.org/LRG/LRG_1019 613401 227089 +HGNC:12694 VIPR1 vasoactive intestinal peptide receptor 1 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "VPAC1|RDC1|HVR1|VPAC1R" VIP and PACAP receptor 1 Vasoactive intestinal peptide receptor family 264 1991-09-13 2016-10-05 7433 ENSG00000114812 OTTHUMG00000131792 uc003clf.3 AH005329 NM_004624 "CCDS2698|CCDS58827|CCDS58828|CCDS58829" P32241 7708752 MGI:109272 RGD:3961 VIPR1 192321 objectId:371 +HGNC:40610 VIPR1-AS1 VIPR1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p22.1 03p22.1 VIPR1 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100874007 ENSG00000232354 OTTHUMG00000156181 uc062iol.1 NR_046654 +HGNC:12695 VIPR2 vasoactive intestinal peptide receptor 2 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "VPAC2|VPAC2R" VIP and PACAP receptor 2 Vasoactive intestinal peptide receptor family 264 1994-04-28 2014-11-19 7434 ENSG00000106018 OTTHUMG00000151446 uc003woh.3 "CA449700|X95097" NM_003382 "CCDS5950|CCDS78295" P41587 7811244 MGI:107166 RGD:3962 VIPR2 601970 objectId:372 +HGNC:12696 VIS1 viral integration site 1 other virus integration site Approved 2q14-q21 02q14-q21 "HIS1|HIS-1" 1992-11-25 2013-12-11 7435 uc021vqo.1 U56440 1682866 164755 +HGNC:12697 VIT vitrin protein-coding gene gene with protein product Approved 2p22.2 02p22.2 1998-04-02 2014-11-19 5212 ENSG00000205221 OTTHUMG00000152149 uc002rpl.4 AF063833 XM_017004325 "CCDS33180|CCDS54347|CCDS54348|CCDS54349|CCDS54350" Q6UXI7 MGI:1921449 RGD:1564128 VIT +HGNC:23663 VKORC1 vitamin K epoxide reductase complex subunit 1 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 VKCFD2 vitamin K dependent clotting factors deficiency 2 2004-02-04 2015-11-09 2016-10-12 79001 ENSG00000167397 OTTHUMG00000047408 uc002eas.4 NM_024006 "CCDS10703|CCDS10704" Q9BQB6 MGI:106442 RGD:1303107 LRG_582|http://www.lrg-sequence.org/LRG/LRG_582 VKORC1 608547 159472 objectId:2645 +HGNC:21492 VKORC1L1 vitamin K epoxide reductase complex subunit 1 like 1 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 2004-02-04 2015-11-09 2015-11-09 154807 ENSG00000196715 OTTHUMG00000129449 uc003tum.3 NM_173517 "CCDS5529|CCDS64663" Q8N0U8 23928358 MGI:1916818 RGD:9409402 VKORC1L1 608838 +HGNC:33182 VKORC1P1 VKORC1 pseudogene 1 pseudogene pseudogene Approved Xp22.11 Xp22.11 2006-11-20 2006-11-20 414355 NG_004115 +HGNC:33183 VKORC1P2 VKORC1 pseudogene 2 pseudogene pseudogene Approved 1p32 01p32 2006-11-20 2006-11-20 414357 NG_004116 +HGNC:12698 VLDLR very low density lipoprotein receptor protein-coding gene gene with protein product Approved 9p24.2 09p24.2 "CARMQ1|CHRMQ1|VLDLRCH" Low density lipoprotein receptors 634 1993-09-24 2016-10-05 7436 ENSG00000147852 OTTHUMG00000019447 uc003zhk.2 NM_003383 "CCDS6446|CCDS34979" P98155 8294473 MGI:98935 RGD:3963 VLDLR 192977 120470 +HGNC:49621 VLDLR-AS1 VLDLR antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9p24.2 09p24.2 2014-01-24 2014-06-02 401491 ENSG00000236404 OTTHUMG00000019448 "AK092343|BC004474" NR_015375 +HGNC:22082 VMA21 VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) protein-coding gene gene with protein product Approved Xq28 Xq28 XMEA MEAX myopathy with excessive autophagy 2009-01-10 2016-10-12 203547 ENSG00000160131 OTTHUMG00000024168 uc004feu.4 AK096835 NM_001017980 CCDS35430 Q3ZAQ7 "2892402|10757644|19379691" MGI:1914298 RGD:1566155 LRG_860|http://www.lrg-sequence.org/LRG/LRG_860 VMA21 300913 189325 +HGNC:33803 VMAC vimentin-type intermediate filament associated coiled-coil protein protein-coding gene gene with protein product Approved 19p13.3 19p13.3 2009-06-12 2012-04-23 400673 ENSG00000187650 OTTHUMG00000180618 uc002mds.5 BC110802 NM_001017921 CCDS32881 Q2NL98 14985129 MGI:2146912 RGD:1303340 VMAC +HGNC:12702 VMD1 vitelliform macular dystrophy, atypical phenotype phenotype only Approved 8q24.3 08q24.3 1986-01-01 2006-10-23 7438 9246008 153840 +HGNC:30387 VMO1 vitelline membrane outer layer 1 homolog protein-coding gene gene with protein product Approved 17p13.2 17p13.2 vitelline membrane outer layer 1 homolog (chicken) 2005-11-14 2016-04-05 2016-04-05 284013 ENSG00000182853 OTTHUMG00000177898 uc002fyx.4 AF521892 NM_182566 "CCDS11055|CCDS45585|CCDS45586|CCDS45587" Q7Z5L0 22025569 MGI:2685587 RGD:1559861 VMO1 +HGNC:29559 VMP1 vacuole membrane protein 1 protein-coding gene gene with protein product Approved 17q23.1 17q23.1 "EPG3|TANGO5" "ectopic P-granules autophagy protein 3 homolog (C. elegans)|transport and golgi organization 5 homolog (Drosophila)" TMEM49 transmembrane protein 49 2005-04-28 2011-03-02 2011-03-02 2014-05-20 81671 ENSG00000062716 OTTHUMG00000179882 uc002ixu.5 NM_030938 CCDS11619 Q96GC9 "11230166|11785947" MGI:1923159 RGD:70367 VMP1 611753 +HGNC:13548 VN1R1 vomeronasal 1 receptor 1 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "V1RL1|ZVNR1|ZVNH1" VNR19I1 vomeronasal olfactory receptor, (chromosome 19) subtype I, member 1 Vomeronasal receptors 291 2003-01-15 2003-01-15 2015-09-03 57191 ENSG00000178201 OTTHUMG00000183400 uc002qos.3 AF255342 NM_020633 CCDS12951 Q9GZP7 10973240 VN1R1 605234 +HGNC:19872 VN1R2 vomeronasal 1 receptor 2 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 V1RL2 Vomeronasal receptors 291 2003-01-15 2015-09-03 317701 ENSG00000196131 OTTHUMG00000182906 uc002qbi.2 AF370359 NM_173856 CCDS12862 Q8NFZ6 12123587 MGI:3645524 VN1R2 +HGNC:19867 VN1R3 vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "V1RL3|FKSG46" "vomeronasal 1 receptor 3|vomeronasal 1 receptor 3 pseudogene" Vomeronasal receptors 291 2003-01-15 2009-10-09 2014-11-19 317702 ENSG00000180663 OTTHUMG00000176634 AF336873 NG_005664 Q9BXE9 RGD:1359155 PGOHUM00000248814 +HGNC:19871 VN1R4 vomeronasal 1 receptor 4 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 V1RL4 Vomeronasal receptors 291 2003-01-15 2015-09-03 317703 ENSG00000228567 OTTHUMG00000182907 uc010ydu.3 AY114733 NM_173857 CCDS33099 Q7Z5H5 12123587 MGI:2159637 RGD:1359134 VN1R4 +HGNC:19870 VN1R5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding gene gene with protein product Approved 1q44 01q44 V1RL5 vomeronasal 1 receptor 5 Vomeronasal receptors 291 2003-01-15 2009-10-09 2015-09-03 317705 ENSG00000197617 OTTHUMG00000041165 "AY114735|AY312489" NM_173858 Q7Z5H4 12123587 RGD:1359628 PGOHUM00000245296 +HGNC:13712 VN1R6P vomeronasal 1 receptor 6 pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 "ZVNR2|ZVNH2" VNR19I2 vomeronasal olfactory receptor, (chromosome 19) subtype I, member 2 Vomeronasal receptors 291 2003-01-15 2003-01-15 2014-11-19 653753 ENSG00000174677 OTTHUMG00000154497 NG_012999 PGOHUM00000234763 +HGNC:8496 VN1R7P vomeronasal 1 receptor 7 pseudogene pseudogene pseudogene Approved 21p11.2 21p11.2 ORLP1 olfactory receptor-like pseudogene 1 Vomeronasal receptors 291 2000-05-23 2003-01-17 2003-01-15 2015-02-02 100132759 ENSG00000275592 OTTHUMG00000188302 AF253314 NG_002218 "11116092|10830953" PGOHUM00000239009 +HGNC:8497 VN1R8P vomeronasal 1 receptor 8 pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 ORLP2 olfactory receptor-like pseudogene 2 Vomeronasal receptors 291 2000-05-23 2003-01-17 2003-01-15 2014-11-19 54041 ENSG00000219280 OTTHUMG00000074205 NG_002647 PGOHUM00000239127 +HGNC:20257 VN1R9P vomeronasal 1 receptor 9 pseudogene pseudogene pseudogene Approved 22q11.1 22q11.1 VN1R22-1P Vomeronasal receptors 291 2003-01-15 2016-07-22 317691 ENSG00000276400 OTTHUMG00000188007 NG_002459 PGOHUM00000297441 +HGNC:13550 VN1R10P vomeronasal 1 receptor 10 pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 "hs6V1-1p|b24o18.2" VNR6I1P vomeronasal olfactory receptor, (chromosome 6) subtype I, member 1 pseudogene Vomeronasal receptors 291 2003-12-09 2003-01-15 2016-10-05 387316 ENSG00000220758 OTTHUMG00000016326 NR_045612 PGOHUM00000243528 +HGNC:13551 VN1R11P vomeronasal 1 receptor 11 pseudogene pseudogene pseudogene Approved 6p22.2 06p22.2 "dJ86C11.7|hs6V1-2p|VNR6I2P" Vomeronasal receptors 291 2003-12-09 2016-10-05 387317 ENSG00000219770 OTTHUMG00000014472 NG_015637 PGOHUM00000243525 +HGNC:18722 VN1R12P vomeronasal 1 receptor 12 pseudogene pseudogene pseudogene Approved 6p22.2 06p22.2 "VNR6I3P|bA373D17.2|hs6V1-3p" Vomeronasal receptors 291 2003-12-09 2016-10-05 387321 ENSG00000220581 OTTHUMG00000014465 NG_015635 +HGNC:18723 VN1R13P vomeronasal 1 receptor 13 pseudogene pseudogene pseudogene Approved 6p22.2 06p22.2 "bA373D17.3|hs6V1-4p|VNR6I4P" Vomeronasal receptors 291 2003-12-09 2016-10-05 387322 ENSG00000216762 OTTHUMG00000014467 NG_015636 PGOHUM00000243091 +HGNC:18721 VN1R14P vomeronasal 1 receptor 14 pseudogene pseudogene pseudogene Approved 6p22-p21 06p22-p21 "bA457M11.4|hs6M1-5p|VNR6I5P" Vomeronasal receptors 291 2003-12-09 2015-02-02 387320 NG_015634 +HGNC:37327 VN1R15P vomeronasal 1 receptor 15 pseudogene pseudogene pseudogene Approved 1q42.13 01q42.13 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312804 NG_015662 PGOHUM00000245233 +HGNC:37330 VN1R16P vomeronasal 1 receptor 16 pseudogene pseudogene pseudogene Approved 1q44 01q44 Vomeronasal receptors 291 2009-09-24 2012-06-11 100312805 NG_015663 +HGNC:37331 VN1R17P vomeronasal 1 receptor 17 pseudogene pseudogene pseudogene Approved 1q44 01q44 Vomeronasal receptors 291 2009-09-24 2014-11-19 441931 ENSG00000235818 OTTHUMG00000041163 NG_011997 Q8TDU5 RGD:1549696 PGOHUM00000244542 +HGNC:37334 VN1R18P vomeronasal 1 receptor 18 pseudogene pseudogene pseudogene Approved 2p16.3 02p16.3 Vomeronasal receptors 291 2009-09-24 2014-11-19 100133087 AC092650 NG_015956 PGOHUM00000240636 +HGNC:37328 VN1R19P vomeronasal 1 receptor 19 pseudogene pseudogene pseudogene Approved 2q21.2 02q21.2 Vomeronasal receptors 291 2009-09-24 2012-06-11 100312843 NG_015701 +HGNC:37335 VN1R20P vomeronasal 1 receptor 20 pseudogene pseudogene pseudogene Approved 3p25.1 03p25.1 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312775 ENSG00000233121 OTTHUMG00000154485 NG_015633 PGOHUM00000237948 +HGNC:37336 VN1R21P vomeronasal 1 receptor 21 pseudogene pseudogene pseudogene Approved 3p25.1 03p25.1 Vomeronasal receptors 291 2009-09-24 2014-11-19 100128368 ENSG00000224752 OTTHUMG00000154484 NG_015951 PGOHUM00000237541 +HGNC:37337 VN1R22P vomeronasal 1 receptor 22 pseudogene pseudogene pseudogene Approved 4q25 04q25 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312844 NG_015702 PGOHUM00000246019 +HGNC:37338 VN1R23P vomeronasal 1 receptor 23 pseudogene pseudogene pseudogene Approved 4q25 04q25 Vomeronasal receptors 291 2009-09-24 2014-11-18 100312845 NG_015703 PGOHUM00000245646 +HGNC:37344 VN1R24P vomeronasal 1 receptor 24 pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 Vomeronasal receptors 291 2009-09-24 2012-06-11 100312781 NG_015639 +HGNC:37345 VN1R25P vomeronasal 1 receptor 25 pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312782 ENSG00000224947 OTTHUMG00000156299 NG_015640 PGOHUM00000233259 +HGNC:37346 VN1R26P vomeronasal 1 receptor 26 pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 Vomeronasal receptors 291 2009-09-24 2012-06-11 100312783 NG_015641 +HGNC:37347 VN1R27P vomeronasal 1 receptor 27 pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 Vomeronasal receptors 291 2009-09-24 2012-06-11 100312784 NG_015642 +HGNC:37348 VN1R28P vomeronasal 1 receptor 28 pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312785 ENSG00000227182 OTTHUMG00000154495 NG_015643 PGOHUM00000232762 +HGNC:37349 VN1R29P vomeronasal 1 receptor 29 pseudogene pseudogene pseudogene Approved 7p11.2 07p11.2 Vomeronasal receptors 291 2009-09-24 2012-06-11 100312786 NG_015644 +HGNC:37350 VN1R30P vomeronasal 1 receptor 30 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-19 100287919 NG_015953 PGOHUM00000233316 +HGNC:37351 VN1R31P vomeronasal 1 receptor 31 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312787 ENSG00000236284 OTTHUMG00000156377 NG_015645 +HGNC:37352 VN1R32P vomeronasal 1 receptor 32 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312788 ENSG00000230361 OTTHUMG00000154490 NG_015646 PGOHUM00000233318 +HGNC:37353 VN1R33P vomeronasal 1 receptor 33 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-19 100288022 ENSG00000227426 OTTHUMG00000154474 NG_015943 PGOHUM00000232786 +HGNC:37354 VN1R34P vomeronasal 1 receptor 34 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-19 100129587 ENSG00000233173 OTTHUMG00000154486 NG_015947 PGOHUM00000232805 +HGNC:37355 VN1R35P vomeronasal 1 receptor 35 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312789 ENSG00000228660 OTTHUMG00000156545 NG_015647 PGOHUM00000232807 +HGNC:37356 VN1R36P vomeronasal 1 receptor 36 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-19 100312790 ENSG00000230639 OTTHUMG00000156548 NG_015648 +HGNC:37357 VN1R37P vomeronasal 1 receptor 37 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-18 402273 ENSG00000213643 OTTHUMG00000156479 NG_015950 PGOHUM00000232820 +HGNC:37358 VN1R38P vomeronasal 1 receptor 38 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2014-11-19 100131065 ENSG00000235227 OTTHUMG00000154469 NG_015958 PGOHUM00000232821 +HGNC:37359 VN1R39P vomeronasal 1 receptor 39 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-24 2012-06-11 100312791 NG_015649 +HGNC:37360 VN1R40P vomeronasal 1 receptor 40 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-25 2014-11-19 100312792 ENSG00000223845 OTTHUMG00000154491 NG_015650 +HGNC:37361 VN1R41P vomeronasal 1 receptor 41 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-25 2014-11-19 100312793 NG_015651 PGOHUM00000233360 +HGNC:37362 VN1R42P vomeronasal 1 receptor 42 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-25 2014-11-19 100312794 ENSG00000223476 OTTHUMG00000156629 NG_015652 +HGNC:37363 VN1R43P vomeronasal 1 receptor 43 pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 Vomeronasal receptors 291 2009-09-25 2012-06-11 100312795 NG_015653 +HGNC:37364 VN1R44P vomeronasal 1 receptor 44 pseudogene pseudogene pseudogene Approved 7 07 Vomeronasal receptors 291 2009-09-25 2012-06-11 100312855 NG_015713 +HGNC:37365 VN1R45P vomeronasal 1 receptor 45 pseudogene pseudogene pseudogene Approved 8p11.21 08p11.21 Vomeronasal receptors 291 2009-09-25 2012-06-11 100312796 NG_015654 +HGNC:37366 VN1R46P vomeronasal 1 receptor 46 pseudogene pseudogene pseudogene Approved 8p11.1 08p11.1 Vomeronasal receptors 291 2009-09-25 2016-10-05 100131789 ENSG00000253611 OTTHUMG00000164103 NG_014057 +HGNC:37367 VN1R47P vomeronasal 1 receptor 47 pseudogene pseudogene pseudogene Approved 9p13.3 09p13.3 Vomeronasal receptors 291 2009-09-25 2012-06-11 100312797 AL139008 NG_015655 +HGNC:37368 VN1R48P vomeronasal 1 receptor 48 pseudogene pseudogene pseudogene Approved 9p13.1 09p13.1 Vomeronasal receptors 291 2009-09-25 2014-11-19 100312798 ENSG00000237487 OTTHUMG00000019943 NG_015656 PGOHUM00000236037 +HGNC:37369 VN1R49P vomeronasal 1 receptor 49 pseudogene pseudogene pseudogene Approved 9q13 09q13 VN1R50P vomeronasal 1 receptor 50 pseudogene Vomeronasal receptors 291 2009-09-25 2016-02-08 100312799 NG_015657 +HGNC:37371 VN1R51P vomeronasal 1 receptor 51 pseudogene pseudogene pseudogene Approved 9q22.33 09q22.33 Vomeronasal receptors 291 2009-09-30 2014-11-18 100312801 ENSG00000228038 OTTHUMG00000020315 NG_015659 PGOHUM00000236276 +HGNC:37372 VN1R52P vomeronasal 1 receptor 52 pseudogene pseudogene pseudogene Approved 9q22.33 09q22.33 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312802 NG_015660 +HGNC:37373 VN1R53P vomeronasal 1 receptor 53 pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312806 ENSG00000236313 OTTHUMG00000017973 NG_015664 +HGNC:37374 VN1R54P vomeronasal 1 receptor 54 pseudogene pseudogene pseudogene Approved 10q11.21 10q11.21 Vomeronasal receptors 291 2009-09-30 2016-08-15 100312807 ENSG00000232109 OTTHUMG00000018015 NG_015665 +HGNC:37375 VN1R55P vomeronasal 1 receptor 55 pseudogene pseudogene pseudogene Approved 10q23.31 10q23.31 Vomeronasal receptors 291 2009-09-30 2014-11-18 100312808 NG_015666 PGOHUM00000238575 +HGNC:37376 VN1R56P vomeronasal 1 receptor 56 pseudogene pseudogene pseudogene Approved 11p15.4 11p15.4 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312774 NG_015632 +HGNC:37377 VN1R57P vomeronasal 1 receptor 57 pseudogene pseudogene pseudogene Approved 12q21.31 12q21.31 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312809 NG_015667 PGOHUM00000239872 +HGNC:37378 VN1R58P vomeronasal 1 receptor 58 pseudogene pseudogene pseudogene Approved 13q11 13q11 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312810 NG_015668 +HGNC:37379 VN1R59P vomeronasal 1 receptor 59 pseudogene pseudogene pseudogene Approved 14q23.1 14q23.1 Vomeronasal receptors 291 2009-09-30 2014-11-19 100312811 NG_015669 PGOHUM00000248196 +HGNC:37380 VN1R60P vomeronasal 1 receptor 60 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 Vomeronasal receptors 291 2009-09-30 2014-11-19 100312812 NG_015670 +HGNC:37381 VN1R61P vomeronasal 1 receptor 61 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312813 NG_015671 +HGNC:37382 VN1R62P vomeronasal 1 receptor 62 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 Vomeronasal receptors 291 2009-09-30 2014-11-19 100312814 NG_015672 +HGNC:37383 VN1R63P vomeronasal 1 receptor 63 pseudogene pseudogene pseudogene Approved 15q11.2 15q11.2 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312815 NG_015673 +HGNC:37384 VN1R64P vomeronasal 1 receptor 64 pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 Vomeronasal receptors 291 2009-09-30 2014-11-18 730196 ENSG00000213547 OTTHUMG00000154494 XR_015841 PGOHUM00000249057 +HGNC:37385 VN1R65P vomeronasal 1 receptor 65 pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 Vomeronasal receptors 291 2009-09-30 2014-11-18 100128384 ENSG00000260883 OTTHUMG00000176624 NG_014049 PGOHUM00000249058 +HGNC:37386 VN1R66P vomeronasal 1 receptor 66 pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 Vomeronasal receptors 291 2009-09-30 2014-11-19 100129315 ENSG00000237185 OTTHUMG00000154473 XM_001717900 PGOHUM00000249059 +HGNC:37387 VN1R67P vomeronasal 1 receptor 67 pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 Vomeronasal receptors 291 2009-09-30 2014-11-18 100131118 ENSG00000260722 OTTHUMG00000176632 NG_014054 PGOHUM00000248813 +HGNC:37389 VN1R68P vomeronasal 1 receptor 68 pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 Vomeronasal receptors 291 2009-09-30 2014-11-19 100131688 ENSG00000259979 OTTHUMG00000176228 NG_014056 PGOHUM00000248849 +HGNC:37390 VN1R69P vomeronasal 1 receptor 69 pseudogene pseudogene pseudogene Approved 16p11.2 16p11.2 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312816 ENSG00000260724 OTTHUMG00000176229 NG_015674 +HGNC:37391 VN1R70P vomeronasal 1 receptor 70 pseudogene pseudogene pseudogene Approved 16p11.1 16p11.1 Vomeronasal receptors 291 2009-09-30 2014-11-18 100130059 ENSG00000261515 OTTHUMG00000176024 NG_014052 +HGNC:37392 VN1R71P vomeronasal 1 receptor 71 pseudogene pseudogene pseudogene Approved 17q11.1 17q11.1 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312817 ENSG00000264837 OTTHUMG00000179150 NG_015675 +HGNC:37393 VN1R72P vomeronasal 1 receptor 72 pseudogene pseudogene pseudogene Approved 17 17 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312853 NG_015711 +HGNC:37394 VN1R73P vomeronasal 1 receptor 73 pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 Vomeronasal receptors 291 2009-09-30 2014-11-19 100312818 NG_015676 +HGNC:37395 VN1R74P vomeronasal 1 receptor 74 pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 Vomeronasal receptors 291 2009-09-30 2015-05-18 100312819 ENSG00000273732 OTTHUMG00000188031 NG_015677 PGOHUM00000294611 +HGNC:37396 VN1R75P vomeronasal 1 receptor 75 pseudogene pseudogene pseudogene Approved 18p11.21 18p11.21 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312820 NG_015678 +HGNC:37397 VN1R76P vomeronasal 1 receptor 76 pseudogene pseudogene pseudogene Approved 18q21.2 18q21.2 Vomeronasal receptors 291 2009-09-30 2014-11-19 100312821 ENSG00000273762 OTTHUMG00000187948 NG_015679 PGOHUM00000234935 +HGNC:37398 VN1R77P vomeronasal 1 receptor 77 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2014-11-18 100312822 NG_015680 PGOHUM00000234206 +HGNC:37399 VN1R78P vomeronasal 1 receptor 78 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312823 ENSG00000268272 OTTHUMG00000182741 NG_015681 PGOHUM00000294927 +HGNC:37400 VN1R79P vomeronasal 1 receptor 79 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312824 ENSG00000269885 OTTHUMG00000182744 NG_015682 PGOHUM00000295257 +HGNC:37329 VN1R80P vomeronasal 1 receptor 80 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312825 ENSG00000268598 OTTHUMG00000182832 NG_015683 PGOHUM00000295271 +HGNC:37401 VN1R81P vomeronasal 1 receptor 81 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312826 ENSG00000268357 OTTHUMG00000182834 NG_015684 PGOHUM00000295273 +HGNC:37402 VN1R82P vomeronasal 1 receptor 82 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-25 100312827 ENSG00000268995 OTTHUMG00000182836 NG_015685 +HGNC:37403 VN1R83P vomeronasal 1 receptor 83 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312828 ENSG00000268521 OTTHUMG00000182840 NG_015686 +HGNC:37404 VN1R84P vomeronasal 1 receptor 84 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312829 ENSG00000268117 OTTHUMG00000182871 NG_015687 PGOHUM00000294942 +HGNC:37405 VN1R85P vomeronasal 1 receptor 85 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312830 ENSG00000269345 OTTHUMG00000182933 NG_015688 +HGNC:37406 VN1R86P vomeronasal 1 receptor 86 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312831 NG_015689 +HGNC:37407 VN1R87P vomeronasal 1 receptor 87 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312832 ENSG00000268789 OTTHUMG00000182990 NG_015690 +HGNC:37408 VN1R88P vomeronasal 1 receptor 88 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2016-07-26 100312833 ENSG00000268541 OTTHUMG00000183121 NG_015691 PGOHUM00000295307 +HGNC:37409 VN1R89P vomeronasal 1 receptor 89 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-09-30 2012-06-11 100312834 NG_015692 +HGNC:37410 VN1R90P vomeronasal 1 receptor 90 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-10-02 2016-07-26 100312835 ENSG00000268794 OTTHUMG00000183236 NG_015693 PGOHUM00000295312 +HGNC:37411 VN1R91P vomeronasal 1 receptor 91 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-10-02 2016-07-26 100312836 ENSG00000268148 OTTHUMG00000183237 NG_015694 +HGNC:37412 VN1R92P vomeronasal 1 receptor 92 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-10-02 2016-07-26 100312837 ENSG00000268908 OTTHUMG00000183273 NG_015695 PGOHUM00000295315 +HGNC:37413 VN1R93P vomeronasal 1 receptor 93 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-10-02 2012-06-11 100312838 ENSG00000269320 OTTHUMG00000183386 NG_015696 +HGNC:37414 VN1R94P vomeronasal 1 receptor 94 pseudogene pseudogene pseudogene Approved 19p12 19p12 Vomeronasal receptors 291 2009-10-02 2012-06-11 100312839 NG_015697 +HGNC:37415 VN1R95P vomeronasal 1 receptor 95 pseudogene pseudogene pseudogene Approved 19q11 19q11 Vomeronasal receptors 291 2009-10-02 2012-06-11 100131141 NG_015948 PGOHUM00000234648 +HGNC:37416 VN1R96P vomeronasal 1 receptor 96 pseudogene pseudogene pseudogene Approved 19q13.2 19q13.2 Vomeronasal receptors 291 2009-10-02 2014-11-19 100127969 ENSG00000230086 OTTHUMG00000154501 NG_015957 PGOHUM00000234317 +HGNC:37417 VN1R97P vomeronasal 1 receptor 97 pseudogene pseudogene pseudogene Approved 19q13.33 19q13.33 Vomeronasal receptors 291 2009-10-02 2014-11-19 100312840 NG_015698 PGOHUM00000234731 +HGNC:37418 VN1R98P vomeronasal 1 receptor 98 pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 Vomeronasal receptors 291 2009-10-02 2012-06-11 100312841 NG_015699 +HGNC:37419 VN1R99P vomeronasal 1 receptor 99 pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 Vomeronasal receptors 291 2009-10-02 2014-11-18 100312842 NG_015700 +HGNC:37420 VN1R100P vomeronasal 1 receptor 100 pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 Vomeronasal receptors 291 2009-10-05 2012-06-11 100312846 NG_015704 +HGNC:37424 VN1R101P vomeronasal 1 receptor 101 pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 Vomeronasal receptors 291 2009-10-05 2012-06-11 729885 XR_015287 +HGNC:37425 VN1R102P vomeronasal 1 receptor 102 pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 Vomeronasal receptors 291 2009-10-05 2012-06-11 100312847 NG_015705 +HGNC:37426 VN1R103P vomeronasal 1 receptor 103 pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 Vomeronasal receptors 291 2009-10-05 2012-06-11 730066 XR_016072 +HGNC:37427 VN1R104P vomeronasal 1 receptor 104 pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 Vomeronasal receptors 291 2009-10-05 2014-11-19 100288195 ENSG00000249654 OTTHUMG00000065546 NG_014074 PGOHUM00000234427 +HGNC:37428 VN1R105P vomeronasal 1 receptor 105 pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 Vomeronasal receptors 291 2009-10-05 2014-11-19 100288264 ENSG00000242856 OTTHUMG00000065711 NG_014075 PGOHUM00000234784 +HGNC:37429 VN1R106P vomeronasal 1 receptor 106 pseudogene pseudogene pseudogene Approved 19q13.42 19q13.42 Vomeronasal receptors 291 2009-10-06 2012-06-11 100312848 NG_015706 +HGNC:37431 VN1R107P vomeronasal 1 receptor 107 pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 Vomeronasal receptors 291 2009-10-06 2016-07-26 100312849 ENSG00000268545 OTTHUMG00000183401 NG_015707 PGOHUM00000295487 +HGNC:37432 VN1R108P vomeronasal 1 receptor 108 pseudogene pseudogene pseudogene Approved 20p11.1 20p11.1 Vomeronasal receptors 291 2009-10-06 2014-11-19 100312850 ENSG00000230772 OTTHUMG00000032139 NG_015708 PGOHUM00000247616 +HGNC:37434 VN1R109P vomeronasal 1 receptor 109 pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 Vomeronasal receptors 291 2009-10-06 2012-06-11 100312851 NG_015709 +HGNC:37438 VN1R110P vomeronasal 1 receptor 110 pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 Vomeronasal receptors 291 2009-10-06 2012-06-11 100312803 ENSG00000231725 OTTHUMG00000024120 NG_015661 +HGNC:37332 VN1R111P vomeronasal 1 receptor 111 pseudogene pseudogene pseudogene Approved 13q11 13q11 Vomeronasal receptors 291 2009-10-06 2014-07-10 100312852 NG_015710 +HGNC:37437 VN1R112P vomeronasal 1 receptor 112 pseudogene pseudogene pseudogene Approved 22 22 Vomeronasal receptors 291 2009-10-06 2015-02-19 100312854 NG_015712 +HGNC:30344 VN2R1P vomeronasal 2 receptor 1 pseudogene pseudogene pseudogene Approved 3q25.31 03q25.31 GPRC2B CASRL1 calcium-sensing receptor like 1 Vomeronasal receptors 291 2005-05-10 2007-02-12 2007-02-12 2014-11-18 344760 ENSG00000174930 OTTHUMG00000154694 AB065664 NG_006066 VN2R1P PGOHUM00000238241 +HGNC:33208 VN2R2P vomeronasal 2 receptor 2 pseudogene pseudogene pseudogene Approved 5q35.3 05q35.3 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033391 NG_006052 +HGNC:33209 VN2R3P vomeronasal 2 receptor 3 pseudogene pseudogene pseudogene Approved 9p12 09p12 "VN2R4P|VN2R5P|VN2R8P" "vomeronasal 2 receptor 4 pseudogene|vomeronasal 2 receptor 5 pseudogene|vomeronasal 2 receptor 8 pseudogene" Vomeronasal receptors 291 2007-02-12 2016-10-05 100033392 ENSG00000234680 OTTHUMG00000152821 NG_006053 +HGNC:33212 VN2R6P vomeronasal 2 receptor 6 pseudogene pseudogene pseudogene Approved 9p11.1 09p11.1 Vomeronasal receptors 291 2007-02-12 2015-02-02 100033395 NG_006056 +HGNC:33213 VN2R7P vomeronasal 2 receptor 7 pseudogene pseudogene pseudogene Approved 9q12 09q12 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033396 NG_006057 +HGNC:33215 VN2R9P vomeronasal 2 receptor 9 pseudogene pseudogene pseudogene Approved 11q12.1 11q12.1 Vomeronasal receptors 291 2007-02-12 2012-06-19 648315 ENSG00000236541 OTTHUMG00000154508 NG_005898 +HGNC:33216 VN2R10P vomeronasal 2 receptor 10 pseudogene pseudogene pseudogene Approved 16q23.1 16q23.1 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033398 ENSG00000226348 OTTHUMG00000154504 NG_006059 +HGNC:33217 VN2R11P vomeronasal 2 receptor 11 pseudogene pseudogene pseudogene Approved 19p13.3 19p13.3 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033399 NG_006060 +HGNC:33218 VN2R12P vomeronasal 2 receptor 12 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033400 NG_006061 +HGNC:33219 VN2R13P vomeronasal 2 receptor 13 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033401 NG_006062 +HGNC:33220 VN2R14P vomeronasal 2 receptor 14 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033402 NG_006063 +HGNC:33221 VN2R15P vomeronasal 2 receptor 15 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033403 NG_007173 +HGNC:33222 VN2R16P vomeronasal 2 receptor 16 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033404 NG_006108 +HGNC:33223 VN2R17P vomeronasal 2 receptor 17 pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 Vomeronasal receptors 291 2007-02-12 2012-11-19 649186 ENSG00000213014 OTTHUMG00000182139 NG_006107 PGOHUM00000234432 +HGNC:33224 VN2R18P vomeronasal 2 receptor 18 pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033406 NG_007172 +HGNC:33225 VN2R19P vomeronasal 2 receptor 19 pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033407 ENSG00000235974 OTTHUMG00000152894 NG_006064 +HGNC:33226 VN2R20P vomeronasal 2 receptor 20 pseudogene pseudogene pseudogene Approved 21q21.2 21q21.2 Vomeronasal receptors 291 2007-02-12 2012-06-19 100033408 NG_006065 +HGNC:33938 VN2R21P vomeronasal 2 receptor 21 pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 Vomeronasal receptors 291 2008-01-16 2012-06-19 100127050 NG_007174 +HGNC:12705 VNN1 vanin 1 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 Tiff66 Vanins 10 1998-11-13 2016-10-05 8876 ENSG00000112299 OTTHUMG00000015587 uc003qdo.4 AJ132099 NM_004666 CCDS5159 O95497 9790769 MGI:108395 RGD:1310075 VNN1 603570 3.5.1.92 +HGNC:12706 VNN2 vanin 2 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 "FOAP-4|GPI-80" pantetheinase Vanins 10 1998-11-13 2016-10-05 8875 ENSG00000112303 OTTHUMG00000015588 uc003qdt.4 AB026705 XM_017011407 "CCDS5161|CCDS5162|CCDS56451" O95498 "9790769|11491533" VNN2 603571 3.5.1.92 +HGNC:40611 VNN2-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:16431 VNN3 vanin 3 protein-coding gene gene with protein product Approved 6q23.2 06q23.2 HSA238982 Vanins 10 2001-08-28 2010-11-15 2010-11-15 2014-11-19 55350 ENSG00000093134 OTTHUMG00000015589 uc063rkw.1 AJ238982 NR_028290 Q9NY84 "10501839|19932582|19322213" MGI:1347055 RGD:1560609 VNN3 606592 3.5.1.92 +HGNC:34518 VOPP1 vesicular, overexpressed in cancer, prosurvival protein 1 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 "ECop|GASP|FLJ20532|DKFZp564K0822" "Glioblastoma-amplified secreted protein|EGFR-coamplified and overexpressed protein" 2009-07-30 2014-11-19 81552 ENSG00000154978 OTTHUMG00000156124 uc003tqs.5 NM_030796 "CCDS47588|CCDS64654|CCDS64656|CCDS64655|CCDS83186|CCDS83187" Q96AW1 15735698 MGI:2141658 RGD:1306494 VOPP1 611915 +HGNC:12709 VPREB1 pre-B lymphocyte 1 protein-coding gene gene with protein product Approved 22q11.22 22q11.22 "VpreB|CD179A" "CD molecules|V-set domain containing" "471|590" 1988-08-31 2008-09-12 2016-10-05 7441 ENSG00000169575 OTTHUMG00000151042 uc002zvx.2 M34927 NM_007128 "CCDS13798|CCDS77657" P12018 3139558 MGI:98936 RGD:1588558 VPREB1 605141 VPREB1 CD179a +HGNC:12710 VPREB3 pre-B lymphocyte 3 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 8HS20 V-set domain containing 590 1999-09-09 2008-09-12 2014-11-19 29802 ENSG00000128218 OTTHUMG00000150738 uc002zxt.4 NM_013378 CCDS13813 Q9UKI3 "10702669|14670953" MGI:98938 RGD:1306807 VPREB3 605017 VPREB3 +HGNC:13488 VPS4A vacuolar protein sorting 4 homolog A protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "VPS4|VPS4-1|FLJ22197|SKD2|SKD1|SKD1A" "vacuolar protein sorting 4A (yeast homolog)|vacuolar protein sorting 4A (yeast)|vacuolar protein sorting 4 homolog A (S. cerevisiae)" "AAA ATPases|ESCRT-IV" "413|1120" 2002-06-12 2016-04-05 2016-04-05 27183 ENSG00000132612 OTTHUMG00000175589 uc002eww.4 AF112215 NM_013245 CCDS45517 Q9UN37 "10637304|11563910" MGI:1890520 RGD:628810 VPS4A 609982 +HGNC:10895 VPS4B vacuolar protein sorting 4 homolog B protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "VPS4-2|SKD1B" SKD1 "suppressor of K+ transport defect 1|vacuolar protein sorting 4B (yeast)|vacuolar protein sorting 4 homolog B (S. cerevisiae)" "AAA ATPases|ESCRT-IV" "413|1120" 1999-07-22 2002-06-14 2016-04-05 2016-04-05 9525 ENSG00000119541 OTTHUMG00000132790 uc002lix.4 AF038960 NM_004869 CCDS11983 O75351 11563910 MGI:1100499 RGD:1305969 VPS4B 609983 +HGNC:29122 VPS8 VPS8, CORVET complex subunit protein-coding gene gene with protein product Approved 3q27.2 03q27.2 FLJ32099 KIAA0804 "KIAA0804|vacuolar protein sorting 8 homolog (S. cerevisiae)" 2005-02-25 2006-07-07 2015-11-27 2015-11-27 23355 ENSG00000156931 OTTHUMG00000156707 uc062qxe.1 AK056661 NM_015303 "CCDS46972|CCDS46971" Q8N3P4 9872452 MGI:2146407 RGD:1309443 VPS8 +HGNC:13526 VPS9D1 VPS9 domain containing 1 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 ATP-BL C16orf7 chromosome 16 open reading frame 7 VPS9 domain containing 928 2000-09-20 2012-10-09 2012-10-09 2014-11-18 9605 ENSG00000075399 OTTHUMG00000173219 uc002fom.2 AB018551 NM_004913 CCDS42220 Q9Y2B5 10231027 MGI:1914143 RGD:1565149 +HGNC:48915 VPS9D1-AS1 VPS9D1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16q24.3 16q24.3 2013-07-01 2013-07-05 100128881 ENSG00000261373 OTTHUMG00000173220 NR_036480 +HGNC:14583 VPS11 VPS11, CORVET/HOPS core subunit protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "RNF108|PEP5" "vacuolar protein sorting 11 (yeast homolog)|vacuolar protein sorting 11 homolog (S. cerevisiae)" Ring finger proteins 58 2001-02-08 2015-11-27 2015-11-27 55823 ENSG00000160695 OTTHUMG00000166355 uc058iep.1 AB027508 NM_021729 "CCDS73404|CCDS76485" Q9H270 26463206 MGI:1918982 RGD:1308038 VPS11 608549 +HGNC:1908 VPS13A vacuolar protein sorting 13 homolog A protein-coding gene gene with protein product Approved 9q21.2 09q21.2 KIAA0986 chorein CHAC "chorea acanthocytosis|vacuolar protein sorting 13A (yeast)|vacuolar protein sorting 13 homolog A (S. cerevisiae)" 1997-06-12 2004-02-11 2016-04-05 2016-10-05 23230 ENSG00000197969 OTTHUMG00000020055 uc004akr.4 AB023203 NM_015186 "CCDS6655|CCDS6656|CCDS47983|CCDS55321" Q96RL7 "9382101|11381253" MGI:2444304 RGD:1311340 VPS13A 605978 120472 +HGNC:44167 VPS13A-AS1 VPS13A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 9q21.2 09q21.2 VPS13A antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2012-10-12 100286938 ENSG00000232998 OTTHUMG00000020054 uc022bij.2 "AA954471|DB509755" NR_026668 +HGNC:2183 VPS13B vacuolar protein sorting 13 homolog B protein-coding gene gene with protein product Approved 8q22.2 08q22.2 "CHS1|COH1" "Cohen syndrome 1|vacuolar protein sorting 13 homolog B (yeast)" 1993-12-15 2005-04-08 2016-05-04 2016-10-12 157680 ENSG00000132549 OTTHUMG00000140383 uc003yiv.5 AJ608772 NM_184042 "CCDS6280|CCDS6281|CCDS6283|CCDS47903" Q7Z7G8 "7920642|15498460" MGI:1916380 RGD:1311183 LRG_351|http://www.lrg-sequence.org/LRG/LRG_351 VPS13B 607817 120476 +HGNC:23594 VPS13C vacuolar protein sorting 13 homolog C protein-coding gene gene with protein product Approved 15q22.2 15q22.2 "FLJ20136|FLJ10381|KIAA1421" "vacuolar protein sorting 13C (yeast)|vacuolar protein sorting 13 homolog C (S. cerevisiae)" 2004-02-10 2016-04-05 2016-10-05 54832 ENSG00000129003 OTTHUMG00000132801 uc002aha.4 AJ608770 NM_017684 "CCDS10180|CCDS32257|CCDS45272|CCDS58367" Q709C8 MGI:2444207 RGD:1560364 VPS13C 608879 456083 +HGNC:23595 VPS13D vacuolar protein sorting 13 homolog D protein-coding gene gene with protein product Approved 1p36.22-p36.21 01p36.22-p36.21 "FLJ10619|KIAA0453" "vacuolar protein sorting 13D (yeast)|vacuolar protein sorting 13 homolog D (S. cerevisiae)" 2004-02-10 2016-04-05 2016-10-11 55187 ENSG00000048707 OTTHUMG00000013155 uc031tou.2 AJ608774 NM_015378 "CCDS30588|CCDS30589" Q5THJ4 MGI:2448530 RGD:1308403 VPS13D 608877 +HGNC:14584 VPS16 VPS16, CORVET/HOPS core subunit protein-coding gene gene with protein product Approved 20p13 20p13 vacuolar protein sorting 16 homolog (S. cerevisiae) 2001-02-08 2009-07-07 2015-11-27 2016-04-06 64601 ENSG00000215305 OTTHUMG00000031714 uc002whe.5 AF308801 NM_022575 "CCDS13036|CCDS13037" Q9H269 "26463206|25783203" MGI:2136772 RGD:1359414 VPS16 608550 +HGNC:15972 VPS18 VPS18, CORVET/HOPS core subunit protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "KIAA1475|PEP3" "vacuolar protein sorting protein 18|vacuolar protein sorting 18 homolog (S. cerevisiae)" 2001-06-25 2016-03-02 2016-03-02 57617 ENSG00000104142 OTTHUMG00000130135 uc001zne.3 AF308802 XM_011521843 CCDS10069 Q9P253 "11250079|16203730|26463206" MGI:2443626 RGD:1311556 VPS18 608551 +HGNC:28122 VPS25 vacuolar protein sorting 25 homolog protein-coding gene gene with protein product Approved 17q21.31 17q21.31 "MGC10540|EAP20|DERP9" "vacuolar protein sorting 25 (yeast)|vacuolar protein sorting 25 homolog (S. cerevisiae)" ESCRT-II 1117 2005-08-02 2016-04-05 2016-04-05 84313 ENSG00000131475 OTTHUMG00000180649 uc002ibi.5 AB014763 NM_032353 CCDS11438 Q9BRG1 15511219 MGI:106354 RGD:1584685 VPS25 610907 +HGNC:44250 VPS25P1 VPS25 pseudogene 1 pseudogene pseudogene Approved 1p12 01p12 vacuolar protein sorting 25 homolog (S. cerevisiae) pseudogene 1 2012-07-25 2013-09-13 2013-09-13 441899 ENSG00000226755 OTTHUMG00000012148 NG_022801 PGOHUM00000244868 +HGNC:12711 VPS26A VPS26, retromer complex component A protein-coding gene gene with protein product Approved 10q22.1 10q22.1 "Hbeta58|PEP8A" VPS26 "vacuolar protein sorting 26 (yeast homolog)|vacuolar protein sorting 26 homolog A (S. pombe)" 2000-03-15 2005-10-11 2016-06-06 2016-10-05 9559 ENSG00000122958 OTTHUMG00000018376 uc001jpb.4 AF054179 NM_004896 "CCDS7286|CCDS41536" O75436 "1638986|9653160|16732284" MGI:1353654 RGD:1359254 VPS26A 605506 +HGNC:44611 VPS26AP1 VPS26A pseudogene 1 pseudogene pseudogene Approved 3q13.31 03q13.31 vacuolar protein sorting 26 homolog A (S. pombe) pseudogene 1 2012-11-19 2013-09-13 2013-09-13 100421731 ENSG00000240375 OTTHUMG00000159341 NG_025727 PGOHUM00000238136 +HGNC:28119 VPS26B VPS26, retromer complex component B protein-coding gene gene with protein product Approved 11q25 11q25 "MGC10485|Pep8b" vacuolar protein sorting 26 homolog B (S. pombe) 2005-10-11 2016-06-06 2016-06-06 112936 ENSG00000151502 OTTHUMG00000167175 uc001qhe.4 NM_052875 CCDS8495 Q4G0F5 "16190980|21920005" MGI:1917656 RGD:1597170 VPS26B 610027 +HGNC:44612 VPS26BP1 VPS26B pseudogene 1 pseudogene pseudogene Approved 3p21.31 03p21.31 vacuolar protein sorting 26 homolog B (S. pombe) pseudogene 1 2012-11-19 2013-09-13 2013-09-13 100421729 ENSG00000224895 OTTHUMG00000156831 NG_025575 PGOHUM00000237617 +HGNC:18178 VPS28 VPS28, ESCRT-I subunit protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "vacuolar protein sorting 28 (yeast)|vacuolar protein sorting 28 homolog (S. cerevisiae)" ESCRT-I 1116 2002-02-13 2016-03-02 2016-03-02 51160 ENSG00000160948 OTTHUMG00000165209 uc003zcs.2 AF316887 XM_017013529 "CCDS6425|CCDS34967" Q9UK41 MGI:1914164 RGD:1306537 VPS28 611952 +HGNC:14340 VPS29 VPS29, retromer complex component protein-coding gene gene with protein product Approved 12q24.11 12q24.11 "PEP11|DC7|DC15" vacuolar protein sorting 29 homolog (S. cerevisiae) 2001-01-04 2016-06-06 2016-06-06 51699 ENSG00000111237 OTTHUMG00000169527 uc001tqy.5 AF193795 XM_017019457 "CCDS41832|CCDS53832|CCDS73525" Q9UBQ0 "11062004|21629666" MGI:1928344 RGD:1308332 VPS29 606932 +HGNC:18179 VPS33A VPS33A, CORVET/HOPS core subunit protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "vacuolar protein sorting 33A (yeast)|vacuolar protein sorting 33 homolog A (S. cerevisiae)" 2002-02-13 2015-11-27 2015-11-27 65082 ENSG00000139719 OTTHUMG00000168920 uc001ucd.4 AK026048 NM_022916 CCDS9231 Q96AX1 "11250079|26463206" MGI:1924823 RGD:620643 VPS33A 610034 +HGNC:12712 VPS33B VPS33B, late endosome and lysosome associated protein-coding gene gene with protein product Approved 15q26.1 15q26.1 FLJ14848 "vacuolar protein sorting 33B (yeast homolog)|vacuolar protein sorting 33 homolog B (yeast)" 1999-11-19 2016-03-02 2016-10-12 26276 ENSG00000184056 OTTHUMG00000149835 uc002bqp.3 AF201694 NM_018668 "CCDS10369|CCDS73783" Q9H267 "8996080|26403612" MGI:2446237 RGD:620644 LRG_884|http://www.lrg-sequence.org/LRG/LRG_884 VPS33B 608552 120480 +HGNC:13487 VPS35 VPS35, retromer complex component protein-coding gene gene with protein product Approved 16q11.2 16q11.2 "FLJ10752|MEM3|PARK17" vacuolar protein sorting 35 homolog (S. cerevisiae) Parkinson disease associated genes 672 2001-06-25 2016-06-06 2016-10-05 55737 ENSG00000069329 OTTHUMG00000132542 uc002eef.5 AF175265 NM_018206 CCDS10721 Q96QK1 "11112353|21763482" MGI:1890467 RGD:1589784 VPS35 601501 285081 +HGNC:51805 VPS35P1 VPS35, retromer complex component pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 vacuolar protein sorting 35 homolog (S. cerevisiae) pseudogene 1 2015-06-09 2016-03-02 2016-03-02 100422055 ENSG00000260809 OTTHUMG00000176657 NG_026414 PGOHUM00000293829 +HGNC:20312 VPS36 vacuolar protein sorting 36 homolog protein-coding gene gene with protein product Approved 13q14.3 13q14.3 "CGI-145|Eap45" C13orf9 "chromosome 13 open reading frame 9|vacuolar protein sorting 36 homolog (yeast)|vacuolar protein sorting 36 homolog (S. cerevisiae)" ESCRT-II 1117 2003-01-24 2005-08-02 2016-04-05 2016-10-05 51028 ENSG00000136100 OTTHUMG00000016964 uc001vgs.5 AF151903 NM_016075 "CCDS9434|CCDS73577" Q86VN1 "11278625|15755741" MGI:1917410 RGD:1309754 VPS36 610903 +HGNC:24928 VPS37A VPS37A, ESCRT-I subunit protein-coding gene gene with protein product Approved 8p22 08p22 "FLJ32642|HCRP1|SPG53" hepatocellular carcinoma related protein 1 PQBP2 "vacuolar protein sorting 37A (yeast)|polyglutamine binding protein 2|vacuolar protein sorting 37 homolog A (S. cerevisiae)" ESCRT-I 1116 2005-09-08 2016-03-02 2016-03-02 137492 ENSG00000155975 OTTHUMG00000130785 uc003wxj.4 NM_152415 "CCDS6001|CCDS47811" Q8NEZ2 "15240819|15218037|22717650" MGI:1261835 RGD:1560016 VPS37A 609927 324251 +HGNC:25754 VPS37B VPS37B, ESCRT-I subunit protein-coding gene gene with protein product Approved 12q24.31 12q24.31 FLJ12750 "vacuolar protein sorting 37B (yeast)|vacuolar protein sorting 37 homolog B (S. cerevisiae)" ESCRT-I 1116 2005-08-17 2016-03-02 2016-03-02 79720 ENSG00000139722 OTTHUMG00000168767 uc001udl.4 AK022812 NM_024667 CCDS9239 Q9H9H4 15218037 MGI:1916724 RGD:1304576 VPS37B 610037 +HGNC:26097 VPS37C VPS37C, ESCRT-I subunit protein-coding gene gene with protein product Approved 11q12.2 11q12.2 FLJ20847 "vacuolar protein sorting 37C (yeast)|vacuolar protein sorting 37 homolog C (S. cerevisiae)" ESCRT-I 1116 2005-08-17 2016-03-02 2016-03-02 55048 ENSG00000167987 OTTHUMG00000167826 uc001nqv.2 AK097326 NM_017966 CCDS31573 A5D8V6 15509564 MGI:2147661 RGD:1309258 VPS37C 610038 +HGNC:18287 VPS37D VPS37D, ESCRT-I subunit protein-coding gene gene with protein product Approved 7q11.23 07q11.23 MGC35352 WBSCR24 "Williams Beuren syndrome chromosome region 24|vacuolar protein sorting 37D (yeast)|vacuolar protein sorting 37 homolog D (S. cerevisiae)" ESCRT-I 1116 2002-03-05 2005-08-18 2016-03-02 2016-03-02 155382 ENSG00000176428 OTTHUMG00000157227 uc003tyr.4 AY081952 NM_152560 CCDS43596 Q86XT2 15218037 MGI:2159402 RGD:1587769 VPS37D 610039 +HGNC:20593 VPS39 VPS39, HOPS complex subunit protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "KIAA0770|VAM6" "vacuolar protein sorting 39 (yeast)|vacuolar protein sorting 39 homolog (S. cerevisiae)" 2003-09-04 2016-03-02 2016-10-05 23339 ENSG00000166887 OTTHUMG00000130467 uc001zpc.4 AF280814 NM_015289 "CCDS10083|CCDS73710" Q96JC1 "11448994|26463206" MGI:2443189 RGD:1304858 VPS39 612188 +HGNC:12713 VPS41 VPS41, HOPS complex subunit protein-coding gene gene with protein product Approved 7p14.1 07p14.1 HVSP41 "vacuolar protein sorting 41 (yeast homolog)|vacuolar protein sorting 41 (yeast)|vacuolar protein sorting 41 homolog (S. cerevisiae)" 2000-01-31 2016-03-02 2016-10-05 27072 ENSG00000006715 OTTHUMG00000023629 uc003tgy.4 U87309 XR_926930 "CCDS5457|CCDS5458" P49754 "9159129|26463206" MGI:1929215 RGD:1560511 VPS41 605485 +HGNC:14579 VPS45 vacuolar protein sorting 45 homolog protein-coding gene gene with protein product Approved 1q21.2 01q21.2 "h-vps45|H1" "VPS45B|VPS45A" "vacuolar protein sorting 45A (yeast homolog)|vacuolar protein sorting 45A (yeast)|vacuolar protein sorting 45 homolog (S. cerevisiae)" 2001-02-08 2006-12-19 2016-04-05 2016-04-05 11311 ENSG00000136631 OTTHUMG00000012511 uc001etp.5 U35246 NM_007259 "CCDS944|CCDS60244|CCDS72904" Q9NRW7 8996080 MGI:891965 RGD:621267 VPS45 610035 376411 +HGNC:25956 VPS50 VPS50, EARP/GARPII complex subunit protein-coding gene gene with protein product Approved 7q21.2-q21.3 07q21.2-q21.3 "KIAA1861|FLJ20097|DKFZp313I2429|VPS54L" syndetin CCDC132 coiled-coil domain containing 132 2006-09-01 2015-06-29 2016-03-02 2016-10-11 55610 ENSG00000004766 OTTHUMG00000131733 "AL833112|AK055965|AL832393" NM_017667 "CCDS5630|CCDS43617|CCDS59065" Q96JG6 "11347906|25453831|25799061" MGI:1920538 RGD:1304751 616465 +HGNC:1172 VPS51 VPS51, GARP complex subunit protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "ANG2|ANG3|FFR" fat-free homolog (zebrafish) "C11orf3|C11orf2" "chromosome 11 open reading frame 3|chromosome 11 open reading frame 2|vacuolar protein sorting 51 homolog (S. cerevisiae)" 1998-08-06 2012-07-19 2016-03-02 2016-03-02 738 ENSG00000149823 OTTHUMG00000165600 uc001ocr.3 AF024631 NM_013265 CCDS8093 Q9UID3 "9286704|20685960" MGI:1915755 RGD:2319165 615738 +HGNC:10518 VPS52 VPS52, GARP complex subunit protein-coding gene gene with protein product Approved 6p21.32 06p21.32 ARE1 SACM2L "SAC2 suppressor of actin mutations 2-like (yeast)|vacuolar protein sorting 52 (yeast)|vacuolar protein sorting 52 homolog (S. cerevisiae)" 1998-03-25 2003-09-05 2016-03-02 2016-10-05 6293 ENSG00000223501 OTTHUMG00000031276 uc011izy.4 AJ223319 NM_022553 CCDS4770 Q8N1B4 "9790748|15878329" MGI:1330304 RGD:3618 VPS52 603443 +HGNC:25608 VPS53 VPS53, GARP complex subunit protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "FLJ10979|HCCS1" "vacuolar protein sorting 53 (yeast)|vacuolar protein sorting 53 homolog (S. cerevisiae)" 2005-11-29 2016-03-02 2016-03-02 55275 ENSG00000141252 OTTHUMG00000177441 uc002frm.3 NM_018289 "CCDS10995|CCDS45558" Q5VIR6 15878329 MGI:1915549 RGD:1311391 VPS53 615850 401564 +HGNC:18652 VPS54 VPS54, GARP complex subunit protein-coding gene gene with protein product Approved 2p15-p14 02p15-p14 "HCC8|PPP1R164" protein phosphatase 1, regulatory subunit 164 "vacuolar protein sorting 54 (yeast)|vacuolar protein sorting 54 homolog (S. cerevisiae)" Protein phosphatase 1 regulatory subunits 694 2003-09-04 2016-03-02 2016-10-11 51542 ENSG00000143952 OTTHUMG00000152627 uc002scq.4 AF102177 NM_016516 "CCDS33208|CCDS46302" Q9P1Q0 "12039048|15878329" MGI:2178798 RGD:628718 VPS54 614633 +HGNC:11644 VPS72 vacuolar protein sorting 72 homolog protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "YL-1|YL1|Swc2" TCFL1 "transcription factor-like 1|vacuolar protein sorting 72 (yeast)|vacuolar protein sorting 72 homolog (S. cerevisiae)" SRCAP complex 1329 1995-12-08 2005-09-08 2016-04-05 2016-10-05 6944 ENSG00000163159 OTTHUMG00000012345 uc001exe.3 D43642 NM_005997 "CCDS989|CCDS59201" Q15906 7702631 MGI:1202305 RGD:1306121 VPS72 600607 +HGNC:12718 VRK1 vaccinia related kinase 1 protein-coding gene gene with protein product Approved 14q32.2 14q32.2 1997-06-12 2012-07-05 7443 ENSG00000100749 OTTHUMG00000171459 uc001yft.4 AB000449 NM_003384 CCDS9947 Q99986 9344656 MGI:1261847 RGD:1306069 VRK1 602168 208345 objectId:2275 +HGNC:12719 VRK2 vaccinia related kinase 2 protein-coding gene gene with protein product Approved 2p16.1 02p16.1 1997-06-12 2014-11-19 7444 ENSG00000028116 OTTHUMG00000129348 uc002rzo.3 AK058199 NM_006296 "CCDS1859|CCDS46291|CCDS46292" Q86Y07 MGI:1917172 RGD:1311585 VRK2 602169 objectId:2276 +HGNC:18996 VRK3 vaccinia related kinase 3 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 2003-08-18 2014-11-18 51231 ENSG00000105053 OTTHUMG00000183053 uc002prg.3 AB031052 NM_016440 "CCDS12791|CCDS33076|CCDS77334" Q8IV63 MGI:2182465 RGD:1549692 VRK3 objectId:2277 +HGNC:23021 VRK3P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-18 +HGNC:20223 VRTN vertebrae development associated protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "FLJ10811|vertnin" C14orf115 "chromosome 14 open reading frame 115|vertebrae development homolog (pig)" 2003-01-15 2010-10-20 2012-12-07 2016-10-05 55237 ENSG00000133980 OTTHUMG00000171208 uc001xpw.5 AK001673 NM_018228 CCDS9830 Q9H8Y1 21232157 MGI:3588197 RGD:1587174 VRTN +HGNC:28675 VSIG1 V-set and immunoglobulin domain containing 1 protein-coding gene gene with protein product Approved Xq22.3 Xq22.3 MGC44287 "V-set domain containing|Immunoglobulin like domain containing" "590|594" 2004-09-02 2014-11-19 340547 ENSG00000101842 OTTHUMG00000022175 uc004eno.4 BX648658 NM_182607 "CCDS14535|CCDS55474" Q86XK7 12477932 MGI:1926039 RGD:1565570 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=VSIG1 VSIG1 300620 +HGNC:17149 VSIG2 V-set and immunoglobulin domain containing 2 protein-coding gene gene with protein product Approved 11q24.2 11q24.2 "CTXL|CTH" "V-set domain containing|I-set domain containing" "590|593" 2004-09-02 2016-10-05 23584 ENSG00000019102 OTTHUMG00000150357 uc001qas.4 AF061022 NM_014312 CCDS8452 Q96IQ7 9862345 MGI:1928009 RGD:1561274 VSIG2 606011 +HGNC:17032 VSIG4 V-set and immunoglobulin domain containing 4 protein-coding gene gene with protein product Approved Xq12 Xq12 Z39IG "V-set domain containing|Immunoglobulin like domain containing" "590|594" 2004-09-10 2016-03-24 11326 ENSG00000155659 OTTHUMG00000021727 uc004dwh.3 AJ132502 NM_007268 "CCDS14383|CCDS48132|CCDS55435" Q9Y279 "11004523|17016555|17016562" MGI:2679720 RGD:1564659 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=VSIG4 VSIG4 300353 +HGNC:32063 VSIG8 V-set and immunoglobulin domain containing 8 protein-coding gene gene with protein product Approved 1q23.2 01q23.2 V-set domain containing 590 2005-12-01 2015-09-03 391123 ENSG00000243284 OTTHUMG00000168834 uc001fuh.3 NM_001013661 CCDS30913 Q5VU13 MGI:3642995 RGD:1562464 VSIG8 +HGNC:26078 VSIG10 V-set and immunoglobulin domain containing 10 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "V-set domain containing|I-set domain containing|Immunoglobulin like domain containing" "590|593|594" 2009-09-09 2013-01-29 54621 ENSG00000176834 OTTHUMG00000168835 uc001tws.4 NM_019086 CCDS44992 Q8N0Z9 12477932 MGI:2448533 RGD:1565800 VSIG10 +HGNC:27111 VSIG10L V-set and immunoglobulin domain containing 10 like protein-coding gene gene with protein product Approved 19q13.41 19q13.41 Immunoglobulin like domain containing 594 2009-09-09 2015-07-22 147645 ENSG00000186806 OTTHUMG00000182975 uc002pwf.4 NM_001163922 CCDS54300 Q86VR7 12477932 MGI:1922940 RGD:1564982 VSIG10L +HGNC:12722 VSNL1 visinin like 1 protein-coding gene gene with protein product Approved 2p24.2 02p24.2 "VILIP|HPCAL3|HUVISL1|HLP3|VILIP-1" hippocalcin-like protein 3 EF-hand domain containing 863 1994-11-02 2015-11-12 2016-10-05 7447 ENSG00000163032 OTTHUMG00000090645 uc061gwj.1 NM_003385 CCDS1689 P62760 "8530085|2202488" MGI:1349453 RGD:3966 VSNL1 600817 +HGNC:29455 VSTM1 V-set and transmembrane domain containing 1 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 UNQ3033 Immunoglobulin like domain containing 594 2006-08-02 2014-11-18 284415 ENSG00000189068 OTTHUMG00000064906 uc002qcw.5 AY358542 NM_198481 "CCDS12872|CCDS74441|CCDS74442" Q6UX27 12975309 RGD:2322891 VSTM1 616804 +HGNC:28499 VSTM2A V-set and transmembrane domain containing 2A protein-coding gene gene with protein product Approved 7p11.2 07p11.2 MGC33530 VSTM2 V-set and transmembrane domain containing 2 V-set domain containing 590 2006-09-12 2007-08-10 2007-08-10 2014-11-19 222008 ENSG00000170419 OTTHUMG00000129271 uc010kzf.4 BC028404 NM_182546 "CCDS5512|CCDS75604|CCDS83185" Q8TAG5 12477932 MGI:2384826 RGD:1596197 VSTM2A +HGNC:50770 VSTM2A-OT1 VSTM2A overlapping transcript 1 non-coding RNA RNA, long non-coding Approved 7p11.2 07p11.2 2014-06-18 2014-06-18 285878 ENSG00000224223 OTTHUMG00000156070 NR_038994 +HGNC:33595 VSTM2B V-set and transmembrane domain containing 2B protein-coding gene gene with protein product Approved 19q12 19q12 V-set domain containing 590 2007-08-10 2015-08-26 342865 ENSG00000187135 OTTHUMG00000182002 uc010xrl.2 NM_001146339 CCDS46034 A6NLU5 MGI:1914525 RGD:1306235 VSTM2B +HGNC:16096 VSTM2L V-set and transmembrane domain containing 2 like protein-coding gene gene with protein product Approved 20q11.23 20q11.23 dJ1118M15.2 C20orf102 chromosome 20 open reading frame 102 V-set domain containing 590 2001-07-17 2007-08-10 2007-08-10 2015-08-26 128434 ENSG00000132821 OTTHUMG00000032430 uc002xhk.5 AL109964 NM_080607 CCDS13299 Q96N03 MGI:2685537 RGD:1305725 VSTM2L 616537 +HGNC:26470 VSTM4 V-set and transmembrane domain containing 4 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 FLJ31737 C10orf72 chromosome 10 open reading frame 72 V-set domain containing 590 2004-02-05 2011-07-01 2011-07-01 2014-11-19 196740 ENSG00000165633 OTTHUMG00000018184 uc001jhf.4 BC041414 NM_144984 "CCDS7228|CCDS31198" Q8IW00 MGI:2444633 RGD:1310423 VSTM4 +HGNC:34443 VSTM5 V-set and transmembrane domain containing 5 protein-coding gene gene with protein product Approved 11q21 11q21 LOC387804 C11orf90 chromosome 11 open reading frame 90 V-set domain containing 590 2008-09-16 2011-07-01 2011-07-01 2015-08-26 387804 ENSG00000214376 OTTHUMG00000154159 uc010ruc.2 NM_001144871 CCDS44709 A8MXK1 16554811 MGI:1916387 RGD:1563328 VSTM5 +HGNC:12723 VSX1 visual system homeobox 1 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 "PPD|PPCD1" PPCD "posterior polymorphous corneal dystrophy|visual system homeobox 1 homolog, CHX10-like (zebrafish)" PRD class homeoboxes and pseudogenes 521 2000-03-14 2007-07-12 2015-09-03 30813 ENSG00000100987 OTTHUMG00000032111 uc002wuf.5 AF176797 XM_017027837 "CCDS13168|CCDS13169|CCDS58766|CCDS58767" Q9NZR4 10673340 MGI:1890816 RGD:1305667 VSX1 605020 8525 120483 +HGNC:1975 VSX2 visual system homeobox 2 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 RET1 "HOX10|CHX10" "C elegans ceh-10 homeo domain-containing homolog|ceh-10 homeo domain containing homolog (C. elegans)|ceh-10 homeodomain containing homolog (C. elegans)" PRD class homeoboxes and pseudogenes 521 1990-01-17 2007-08-21 2007-08-21 2015-08-26 338917 ENSG00000119614 OTTHUMG00000171206 uc001xpq.3 AC005519 NM_182894 CCDS9827 P58304 1973146 MGI:88401 RGD:621215 VSX2 142993 8559 159362 +HGNC:20954 VTA1 vesicle trafficking 1 protein-coding gene gene with protein product Approved 6q24.1-q24.2 06q24.1-q24.2 "HSPC228|My012" C6orf55 "chromosome 6 open reading frame 55|Vps20-associated 1 homolog (S. cerevisiae)|vesicle (multivesicular body) trafficking 1" ESCRT-IV 1120 2003-04-24 2007-04-03 2016-04-04 2016-10-11 51534 ENSG00000009844 OTTHUMG00000015707 uc003qiw.5 AF060225 NM_016485 "CCDS5197|CCDS69214|CCDS75531" Q9NP79 "11489251|15644320" MGI:1913451 RGD:1305031 VTA1 610902 +HGNC:50483 VTA1P1 vesicle (multivesicular body) trafficking 1 pseudogene 1 pseudogene pseudogene Approved 6q27 06q27 2014-05-06 2014-05-06 106481708 ENSG00000224999 OTTHUMG00000045407 NG_043284 PGOHUM00000243461 +HGNC:50484 VTA1P2 vesicle (multivesicular body) trafficking 1 pseudogene 2 pseudogene pseudogene Approved 8q21.3 08q21.3 2014-05-06 2014-05-06 100128412 ENSG00000253401 OTTHUMG00000163765 NG_022395 PGOHUM00000249422 +HGNC:28873 VTCN1 V-set domain containing T cell activation inhibitor 1 protein-coding gene gene with protein product Approved 1p13.1-p12 01p13.1-p12 "B7-H4|FLJ22418|B7S1|B7X|B7H4" "B7 family member, H4|B7 superfamily member 1" "V-set domain containing|Immunoglobulin like domain containing" "590|594" 2005-02-25 2016-10-11 79679 ENSG00000134258 OTTHUMG00000012118 uc001ehb.4 BX648021 NM_024626 "CCDS894|CCDS58019|CCDS58020" Q7Z7D3 "12818165|12818166" MGI:3039619 RGD:1311204 VTCN1 608162 +HGNC:17792 VTI1A vesicle transport through interaction with t-SNAREs 1A protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "MVti1|Vti1a|Vti1-rp2" vesicle transport through interaction with t-SNAREs homolog 1A (yeast) SNAREs 1124 2002-11-22 2012-12-10 2014-11-18 143187 ENSG00000151532 OTTHUMG00000019063 uc001kzz.5 BC017052 XM_017015745 CCDS7575 Q96AJ9 9446565 MGI:1855699 RGD:621490 VTI1A 614316 +HGNC:17793 VTI1B vesicle transport through interaction with t-SNAREs 1B protein-coding gene gene with protein product Approved 14q24.1 14q24.1 VTI2 vesicle transport through interaction with t-SNAREs homolog 1B (yeast) SNAREs 1124 2002-11-22 2012-12-10 2016-10-05 10490 ENSG00000100568 OTTHUMG00000171251 uc001xjt.4 AF060902 NM_006370 CCDS9786 Q9UEU0 "9636656|9446565" MGI:1855688 RGD:2323682 VTI1B 603207 +HGNC:43727 VTI1BP1 vesicle transport through interaction with t-SNAREs 1B pseudogene 1 pseudogene pseudogene Approved 3q12.1 03q12.1 vesicle transport through interaction with t-SNAREs homolog 1B (yeast) pseudogene 1 2012-02-10 2012-12-10 2012-12-10 391559 ENSG00000243974 OTTHUMG00000159057 NG_022260 PGOHUM00000238116 +HGNC:43728 VTI1BP2 vesicle transport through interaction with t-SNAREs 1B pseudogene 2 pseudogene pseudogene Approved 4q35.1 04q35.1 vesicle transport through interaction with t-SNAREs homolog 1B (yeast) pseudogene 2 2012-02-10 2012-12-10 2012-12-10 389246 ENSG00000213434 OTTHUMG00000160629 NG_005181 PGOHUM00000246153 +HGNC:43729 VTI1BP3 vesicle transport through interaction with t-SNAREs 1B pseudogene 3 pseudogene pseudogene Approved 12q13.13 12q13.13 vesicle transport through interaction with t-SNAREs homolog 1B (yeast) pseudogene 3 2012-02-10 2012-12-10 2012-12-10 100127976 ENSG00000258074 OTTHUMG00000170022 NG_021720 PGOHUM00000239791 +HGNC:43730 VTI1BP4 vesicle transport through interaction with t-SNAREs 1B pseudogene 4 pseudogene pseudogene Approved 9q34.11 09q34.11 vesicle transport through interaction with t-SNAREs homolog 1B (yeast) pseudogene 4 2012-02-10 2012-12-10 2012-12-10 100422540 ENSG00000227759 OTTHUMG00000020751 NG_023958 PGOHUM00000236776 +HGNC:12724 VTN vitronectin protein-coding gene gene with protein product Approved 17q11.2 17q11.2 VN "serum spreading factor|somatomedin B|complement S-protein" vitronectin (serum spreading factor, somatomedin B, complement S-protein) Endogenous ligands 542 1992-07-30 2006-02-10 2014-11-18 7448 ENSG00000109072 OTTHUMG00000132500 uc002hbc.4 BC005046 NM_000638 CCDS11229 P04004 2447940 MGI:98940 RGD:3967 VTN 193190 +HGNC:12654 VTRNA1-1 vault RNA 1-1 non-coding RNA RNA, vault Approved 5q31.3 05q31.3 "vtRNA1-1|hvg-1|HVG1|vRNA|VR1" VAULTRC1 vault RNA component 1 Vault RNAs 852 2000-07-31 2009-03-23 2009-03-23 2013-05-03 56664 ENSG00000199990 uc011czv.2 "AF045143|BD247418" NR_026703 "9535882|19298825|19491402" 612695 +HGNC:12655 VTRNA1-2 vault RNA 1-2 non-coding RNA RNA, vault Approved 5q31.3 05q31.3 "vtRNA1-2|hvg-2|HVG2|VR2" VAULTRC2 vault RNA component 2 Vault RNAs 852 2000-07-31 2009-03-23 2009-03-23 2013-05-03 56663 ENSG00000202111 uc011czw.2 "AF045144|BD247419" NR_026704 "9535882|19298825|19491402" 612696 +HGNC:12656 VTRNA1-3 vault RNA 1-3 non-coding RNA RNA, vault Approved 5q31.3 05q31.3 "vtRNA1-3|hvg-3|HVG3|VR3" VAULTRC3 vault RNA component 3 Vault RNAs 852 2000-07-31 2009-03-23 2009-03-23 2013-05-03 56662 ENSG00000202515 uc011czx.2 AF045145 NR_026705 "9535882|19298825|19491402" 612697 +HGNC:37054 VTRNA2-1 vault RNA 2-1 non-coding RNA RNA, vault Approved 5q31.1 05q31.1 "vtRNA2|hvg-5|CBL-3|hsa-mir-886|nc886" "MIR886|MIRN886|VTRNA2" "microRNA 886|vault RNA 2" Vault RNAs 852 2009-03-23 2011-04-11 2011-04-11 2016-10-12 100126299 ENSG00000270123 OTTHUMG00000183992 uc021ydy.2 NR_030583 "19298825|19491402|22926522|22058117" LRG_1104|http://www.lrg-sequence.org/LRG/LRG_1104 614938 +HGNC:46889 VTRNA2-2P vault RNA 2-2, pseudogene pseudogene pseudogene Approved 2p14 02p14 Vault RNAs 852 2013-10-30 2013-10-30 106479538 ENSG00000251900 NG_044305 +HGNC:23027 VTRNA3-1P vault RNA 3-1, pseudogene pseudogene pseudogene Approved Xp11.22 Xp11.22 "vtRNA3P|hvg-4|HVG4" "VAULTRC4|VTRNA3P" "vault RNA component 4|vault RNA 3 (pseudogene)" Vault RNAs 852 2008-03-28 2011-04-11 2011-04-11 2013-05-02 100144435 ENSG00000199422 uc022bxg.2 BD247421 NG_007501 "12758122|19298825|19491402" +HGNC:30910 VWA1 von Willebrand factor A domain containing 1 protein-coding gene gene with protein product Approved 1p36.33 01p36.33 "FLJ22215|VWA-1|WARP" Fibronectin type III domain containing 555 2005-07-18 2016-04-25 64856 ENSG00000179403 OTTHUMG00000002975 uc001afs.4 BC059409 NM_022834 "CCDS27|CCDS28" Q6PCB0 "14527666|12062410" MGI:2179729 RGD:1311476 VWA1 611901 +HGNC:24709 VWA2 von Willebrand factor A domain containing 2 protein-coding gene gene with protein product Approved 10q25.3 10q25.3 "FLJ45857|FLJ16213|CCSP-2|AMACO|NET42" 2005-12-19 2016-04-25 340706 ENSG00000165816 OTTHUMG00000019082 uc001lbl.3 AK127756 NM_198496 CCDS7589 Q5GFL6 "15580307|14506275" MGI:2684334 RGD:1562000 VWA2 +HGNC:27088 VWA3A von Willebrand factor A domain containing 3A protein-coding gene gene with protein product Approved 16p12.2 16p12.2 "FLJ46765|FLJ40941" 2007-08-14 2015-07-22 146177 ENSG00000175267 OTTHUMG00000175461 uc010vbq.2 "AK128606|AK098260" XM_011545742 CCDS45441 A6NCI4 12477932 MGI:3041229 RGD:1311670 VWA3A +HGNC:28385 VWA3B von Willebrand factor A domain containing 3B protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "DKFZp686F2227|MGC26733" 2007-08-14 2015-09-03 200403 ENSG00000168658 OTTHUMG00000153104 uc002syo.4 AL832761 NM_144992 CCDS42718 Q502W6 12477932 MGI:1918103 RGD:1562560 VWA3B 614884 +HGNC:6658 VWA5A von Willebrand factor A domain containing 5A protein-coding gene gene with protein product Approved 11q24.2 11q24.2 BCSC-1 LOH11CR2A loss of heterozygosity, 11, chromosomal region 2, gene A 1997-08-28 2008-07-25 2008-07-25 2016-10-05 4013 ENSG00000110002 OTTHUMG00000165971 uc001pzu.4 AF002672 NM_014622 "CCDS8444|CCDS8445" O00534 "9417908|14504409" MGI:1915026 RGD:735145 VWA5A 602929 +HGNC:26538 VWA5B1 von Willebrand factor A domain containing 5B1 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 FLJ32784 2008-07-25 2014-11-19 127731 ENSG00000158816 OTTHUMG00000002835 uc057cyt.1 "AK125833|AK057346" XM_001722222 Q5TIE3 MGI:1922968 RGD:1308559 VWA5B1 +HGNC:25144 VWA5B2 von Willebrand factor A domain containing 5B2 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "DKFZp761K032|LOC90113" 2008-07-25 2008-07-25 2014-11-19 90113 ENSG00000145198 OTTHUMG00000156820 uc011bra.3 XM_291077 "CCDS54686|CCDS82881" Q8N398 15231747 MGI:2681859 RGD:1564491 VWA5B2 +HGNC:13939 VWA7 von Willebrand factor A domain containing 7 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G7c|NG37" C6orf27 chromosome 6 open reading frame 27 2002-04-05 2011-12-13 2011-12-13 2016-10-05 80737 ENSG00000204396 OTTHUMG00000031132 uc011dog.3 NM_025258 CCDS4721 Q9Y334 MGI:1306798 RGD:1303137 609693 +HGNC:29071 VWA8 von Willebrand factor A domain containing 8 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 KIAA0564 KIAA0564 2007-12-06 2012-08-02 2012-08-02 2014-11-18 23078 ENSG00000102763 OTTHUMG00000016799 uc001uyk.4 AB011136 NM_015058 "CCDS31963|CCDS41881" A3KMH1 9628581 MGI:1919008 RGD:1308772 +HGNC:44270 VWA8-AS1 VWA8 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 13q14.11 13q14.11 "VWA8 antisense RNA 1 (non-protein coding)|VWA8 antisense RNA 1" 2012-08-02 2012-08-16 2012-10-12 100507240 ENSG00000278338 OTTHUMG00000187366 uc021rix.1 "AK092199|CA310831" NR_039974 +HGNC:44271 VWA8P1 von Willebrand factor A domain containing 8 pseudogene 1 pseudogene pseudogene Approved 5q13.1 05q13.1 2012-08-02 2012-08-02 106480787 ENSG00000250289 OTTHUMG00000162334 NG_044066 PGOHUM00000235248 +HGNC:25372 VWA9 von Willebrand factor A domain containing 9 protein-coding gene gene with protein product Approved 15q22.31 15q22.31 DKFZP564O1664 C15orf44 chromosome 15 open reading frame 44 2005-10-25 2012-09-27 2012-09-27 2014-11-19 81556 ENSG00000138614 OTTHUMG00000133159 uc002ape.5 AL136662 NM_030800 "CCDS55969|CCDS45283" Q96SY0 11230166 MGI:1917132 RGD:1359616 VWA9 +HGNC:30200 VWC2 von Willebrand factor C domain containing 2 protein-coding gene gene with protein product Approved 7p12.2 07p12.2 "PSST739|UNQ739" "brorin|brain-specific chordin-like" 2006-08-04 2016-10-05 375567 ENSG00000188730 OTTHUMG00000129265 uc003tot.2 AY358393 NM_198570 CCDS5508 Q2TAL6 17400546 MGI:2442987 RGD:1589624 VWC2 611108 +HGNC:37203 VWC2L von Willebrand factor C domain containing protein 2-like protein-coding gene gene with protein product Approved 2q34-q35 02q34-q35 von Willebrand factor C domain-containing protein 2-like 2009-09-22 2011-01-25 2016-10-11 402117 ENSG00000174453 OTTHUMG00000154811 uc002vet.3 AB374231 NM_001080500 CCDS46509 B2RUY7 MGI:2444069 RGD:1565501 VWC2L +HGNC:41508 VWC2L-IT1 VWC2L intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2q35 02q35 VWC2L intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100885780 ENSG00000224257 OTTHUMG00000154819 uc031rrf.2 NR_047698 +HGNC:26487 VWCE von Willebrand factor C and EGF domains protein-coding gene gene with protein product Approved 11q12.2 11q12.2 "URG11|FLJ32009|VWC1" 2006-01-24 2014-11-19 220001 ENSG00000167992 OTTHUMG00000168208 uc001nra.4 AK056571 NM_152718 CCDS8002 Q96DN2 12869306 MGI:1919018 RGD:1309910 VWCE 611115 +HGNC:21897 VWDE von Willebrand factor D and EGF domains protein-coding gene gene with protein product Approved 7p21.3 07p21.3 FLJ14712 2008-08-11 2008-09-23 221806 ENSG00000146530 OTTHUMG00000152315 uc003ssj.3 XM_371878 CCDS47544 Q8N2E2 "14702039|16303743" MGI:2685313 RGD:1561223 VWDE +HGNC:12726 VWF von Willebrand factor protein-coding gene gene with protein product Approved 12p13.31 12p13.31 F8VWF Endogenous ligands 542 1986-01-01 2016-10-12 7450 ENSG00000110799 OTTHUMG00000168265 uc001qnn.2 NM_000552 CCDS8539 P04275 2251280 MGI:98941 RGD:621759 "Von Willebrand Factor Database|http://vwf.group.shef.ac.uk/|LRG_587|http://www.lrg-sequence.org/LRG/LRG_587" VWF 613160 120487 +HGNC:12727 VWFP1 von Willebrand factor pseudogene 1 pseudogene pseudogene Approved 22q11.1 22q11.1 "F8VWFP|F8VWFL|VWFP" von Willebrand factor pseudogene 1989-04-24 2010-02-25 2010-02-25 2016-10-05 7451 ENSG00000241717 OTTHUMG00000143725 X66120 NG_001212 PGOHUM00000246202 +HGNC:17327 WAC WW domain containing adaptor with coiled-coil protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "Wwp4|FLJ31290|PRO1741|BM-016|MGC10753" WW domain-containing adaptor with coiled coil 2004-01-22 2003-03-19 2014-11-19 51322 ENSG00000095787 OTTHUMG00000017872 uc001iuf.4 AK055852 NM_100264 "CCDS7159|CCDS7160|CCDS7161" Q9BTA9 11827461 MGI:2387357 RGD:1562407 WAC 615049 +HGNC:27347 WAC-AS1 WAC antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 10p12.1 10p12.1 2012-11-06 2012-11-06 220906 ENSG00000254635 OTTHUMG00000166235 uc021pon.2 NR_033805 12477932 +HGNC:23293 WAPL WAPL cohesin release factor protein-coding gene gene with protein product Approved 10q23.2 10q23.2 FOE friend of EBNA2 "KIAA0261|WAPAL" "KIAA0261|wings apart-like homolog (Drosophila)" 2003-11-21 2015-07-30 2015-07-30 2016-10-05 23063 ENSG00000062650 OTTHUMG00000018651 AB065003 NM_015045 CCDS7375 Q7Z5K2 "9039502|17112726" MGI:2675859 RGD:1590924 610754 +HGNC:12729 WARS tryptophanyl-tRNA synthetase protein-coding gene gene with protein product Approved 14q32.2 14q32.2 IFP53 tryptophan tRNA ligase 1, cytoplasmic IFI53 Aminoacyl tRNA synthetases, Class I 131 2001-06-22 2014-11-19 7453 ENSG00000140105 OTTHUMG00000171572 uc001yhl.2 M61715 NM_004184 "CCDS9960|CCDS9961" P23381 "1537332|1763065" MGI:104630 RGD:1308278 WARS 191050 6.1.1.2 +HGNC:12730 WARS2 tryptophanyl tRNA synthetase 2, mitochondrial protein-coding gene gene with protein product Approved 1p12 01p12 TrpRS tryptophan tRNA ligase 2, mitochondrial Aminoacyl tRNA synthetases, Class I 131 1999-06-11 2007-02-23 2014-11-19 10352 ENSG00000116874 OTTHUMG00000012335 uc001ehn.4 BC021722 NM_015836 "CCDS900|CCDS30817" Q9UGM6 "10072595|10828066" MGI:1917810 RGD:1593417 WARS2 604733 6.1.1.2 +HGNC:41393 WARS2-IT1 WARS2 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p12 01p12 WARS2 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 104472716 ENSG00000224238 OTTHUMG00000012341 uc057juy.1 NR_126447 +HGNC:45116 WARS2P1 tryptophanyl tRNA synthetase 2 pseudogene 1 pseudogene pseudogene Approved 10q23.1 10q23.1 2013-02-15 2013-02-15 100421633 ENSG00000227209 OTTHUMG00000018622 NG_025451 PGOHUM00000258497 +HGNC:50482 WARSP1 tryptophanyl-tRNA synthetase pseudogene 1 pseudogene pseudogene Approved 11q12.1 11q12.1 2014-05-06 2014-05-06 341112 ENSG00000225802 OTTHUMG00000167476 NG_050634 PGOHUM00000261835 +HGNC:12731 WAS Wiskott-Aldrich syndrome protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "WASP|WASPA" eczema-thrombocytopenia "IMD2|THC" "thrombocytopenia 1 (X-linked)|Wiskott-Aldrich syndrome (eczema-thrombocytopenia)" Wiskott-Aldrich Syndrome protein family 14 2001-06-22 2012-07-12 2016-10-12 7454 ENSG00000015285 OTTHUMG00000034483 uc004dkm.5 AF115548 NM_000377 CCDS14303 P42768 7795648 MGI:105059 RGD:1563567 "WASbase: Mutation registry for Wiskott-Aldrich syndrome (WAS)|http://structure.bmc.lu.se/idbase/WASbase/|LRG_125|http://www.lrg-sequence.org/LRG/LRG_125" WAS 300392 120490 +HGNC:12732 WASF1 WAS protein family member 1 protein-coding gene gene with protein product Approved 6q21 06q21 "WAVE1|SCAR1|KIAA0269|WAVE" WAS protein family, member 1 "Wiskott-Aldrich Syndrome protein family|A-kinase anchoring proteins" "14|396" 1999-09-21 2015-11-18 2015-11-18 8936 ENSG00000112290 OTTHUMG00000015357 uc003ptv.1 D87459 NM_003931 CCDS5080 Q92558 "9843499|9889097" MGI:1890563 RGD:1561954 WASF1 605035 +HGNC:51533 WASF1P1 WASF1 pseudogene 1 pseudogene pseudogene Approved 2q12.3 02q12.3 2015-02-20 2015-02-20 100131624 ENSG00000227597 OTTHUMG00000153228 NG_021575 PGOHUM00000298614 +HGNC:12733 WASF2 WAS protein family member 2 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "WAVE2|SCAR2" WAS protein family, member 2 Wiskott-Aldrich Syndrome protein family 14 1999-09-21 2015-11-18 2015-11-18 10163 ENSG00000158195 OTTHUMG00000003393 uc057dvq.1 AB026542 NM_006990 "CCDS304|CCDS55582" Q9Y6W5 10381382 MGI:1098641 RGD:1307299 WASF2 605875 +HGNC:12734 WASF3 WAS protein family member 3 protein-coding gene gene with protein product Approved 13q12.13 13q12.13 "WAVE3|SCAR3|KIAA0900" WAS protein family, member 3 Wiskott-Aldrich Syndrome protein family 14 1999-09-21 2015-11-18 2016-10-05 10810 ENSG00000132970 OTTHUMG00000016621 uc001uqv.5 AB020707 NM_006646 "CCDS9318|CCDS76626" Q9UPY6 10381382 MGI:2658986 RGD:1592807 WASF3 605068 +HGNC:39841 WASF3-AS1 WASF3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 13q12.13 13q12.13 WASF3 antisense RNA 1 (non-protein coding) 2011-03-30 2012-08-15 2014-11-19 100874061 ENSG00000237001 OTTHUMG00000016619 uc058vzt.1 +HGNC:20801 WASF4P WAS protein family member 4, pseudogene pseudogene pseudogene Approved Xp11.23 Xp11.23 WASF4 "WAS protein family, member 4|WAS protein family, member 4, pseudogene" Wiskott-Aldrich Syndrome protein family 14 2007-07-31 2011-05-10 2015-11-18 2015-11-18 644739 ENSG00000188459 OTTHUMG00000021456 AJ509090 NG_007616 WASF4P PGOHUM00000241739 +HGNC:21665 WASF5P WAS protein family member 5, pseudogene pseudogene pseudogene Approved 6p21.33 06p21.33 Em:D84394.5 WAS protein family, member 5, pseudogene Wiskott-Aldrich Syndrome protein family 14 2003-11-27 2015-11-18 2015-11-18 387122 ENSG00000231402 OTTHUMG00000031266 NG_007617 PGOHUM00000243140 +HGNC:24361 WASH1 WAS protein family homolog 1 protein-coding gene gene with protein product Approved 9p24.3 09p24.3 FLJ00038 FAM39E family with sequence similarity 39, member E "Wiskott-Aldrich Syndrome protein family|WASH complex" "14|1331" 2007-08-02 2008-01-16 2008-01-16 2016-10-07 100287171 ENSG00000181404 OTTHUMG00000019420 uc010mgm.2 AY341937 NM_182905 CCDS78375 A8K0Z3 "15233989|18159949" MGI:1916017 RGD:1310196 613632 +HGNC:33145 WASH2P WAS protein family homolog 2 pseudogene pseudogene pseudogene Approved 2q14.1 02q14.1 MGC52000 FAM39B family with sequence similarity 39, member B Wiskott-Aldrich Syndrome protein family 14 2006-10-12 2008-01-16 2008-01-16 2016-10-05 375260 ENSG00000146556 OTTHUMG00000047822 NM_198943 Q6VEQ5 18159949 +HGNC:24362 WASH3P WAS protein family homolog 3 pseudogene pseudogene pseudogene Approved 15q26.3 15q26.3 FLJ25222 FAM39DP family with sequence similarity 39, member D pseudogene Wiskott-Aldrich Syndrome protein family 14 2006-10-19 2008-01-16 2008-01-16 2014-11-19 374666 ENSG00000185596 OTTHUMG00000172275 NM_199163 C4AMC7 "11701968|18159949" WASH3P +HGNC:14126 WASH4P WAS protein family homolog 4 pseudogene pseudogene pseudogene Approved 16p13.3 16p13.3 FLJ31670 FAM39CP family with sequence similarity 39, member C pseudogene Wiskott-Aldrich Syndrome protein family 14 2006-10-19 2008-01-16 2008-01-16 2014-10-10 374677 ENSG00000234769 OTTHUMG00000059914 NG_003159 A8MWX3 "9054936|11701968|18159949" WASH4P +HGNC:33884 WASH5P WAS protein family homolog 5 pseudogene pseudogene pseudogene Approved 19p 19p Wiskott-Aldrich Syndrome protein family 14 2007-11-20 2008-01-16 2008-01-16 2010-04-21 375690 ENSG00000282458 OTTHUMG00000180466 NR_033266 18159949 +HGNC:31685 WASH6P WAS protein family homolog 6 pseudogene pseudogene pseudogene Approved Xq28 and Yq12 Xq28 and Yq12 "FAM39A|CXYorf1" "family with sequence similarity 39, member A|chromosomes X and Y open reading frame 1" "Wiskott-Aldrich Syndrome protein family|Pseudoautosomal region 2" "14|716" 2005-12-22 2008-01-16 2008-01-16 2014-11-19 653440 ENSG00000182484 OTTHUMG00000022677 AI042587 NG_008380 Q9NQA3 "10655549|12566406|18159949" +HGNC:38034 WASH7P WAS protein family homolog 7 pseudogene pseudogene pseudogene Approved 1p36.33 01p36.33 FAM39F family with sequence similarity 39, member F Wiskott-Aldrich Syndrome protein family 14 2010-03-23 2010-03-23 653635 ENSG00000227232 OTTHUMG00000000958 NR_024540 18159949 +HGNC:38513 WASIR1 WASH and IL9R antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq28 and Yq12 Xq28 and Yq12 NCRNA00286B "non-protein coding RNA 286B|WASH and IL9R antisense RNA 1 (non-protein coding)" Pseudoautosomal region 2 716 2010-08-24 2011-04-28 2012-08-15 2012-10-12 100128260 ENSG00000185203 OTTHUMG00000022676 uc065cww.1 AJ271736 XR_001755999 +HGNC:38609 WASIR2 WASH and IL9R antisense RNA 2 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 NCRNA00286A "non-protein coding RNA 286A|WASH and IL9R antisense RNA 2 (non-protein coding)" 2010-08-24 2011-04-28 2012-08-15 2012-10-12 100132169 ENSG00000231439 OTTHUMG00000060721 uc002cfh.4 "BC032901|CR605219" XR_078518 11157797 +HGNC:12735 WASL Wiskott-Aldrich syndrome like protein-coding gene gene with protein product Approved 7q31.32 07q31.32 "N-WASP|NWASP|WASPB" Wiskott-Aldrich syndrome-like Wiskott-Aldrich Syndrome protein family 14 1998-10-14 2016-03-15 2016-10-05 8976 ENSG00000106299 OTTHUMG00000157346 uc003vkz.5 D88460 NM_003941 CCDS34743 O00401 "9422512|9322739" MGI:1920428 RGD:735144 WASL 605056 +HGNC:12737 WBP1 WW domain binding protein 1 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 WBP-1 1999-11-26 2016-10-05 23559 ENSG00000239779 OTTHUMG00000129958 uc002slj.3 U79457 NM_012477 CCDS1943 Q96G27 7644498 MGI:104710 RGD:1304961 WBP1 606961 +HGNC:23510 WBP1L WW domain binding protein 1-like protein-coding gene gene with protein product Approved 10q24.32 10q24.32 "FLJ20154|OPAL1" outcome predictor in acute leukemia 1 C10orf26 chromosome 10 open reading frame 26 2003-11-21 2012-05-02 2012-05-02 2016-10-05 54838 ENSG00000166272 OTTHUMG00000018968 uc001kwe.5 AK056285 NM_017787 "CCDS7540|CCDS44473" Q9NX94 MGI:107577 RGD:1305793 WBP1L 611129 +HGNC:43948 WBP1LP1 WW domain binding protein 1-like pseudogene 1 pseudogene pseudogene Approved 7q34 07q34 2012-05-16 2014-12-01 106479029 ENSG00000243661 OTTHUMG00000158902 NG_044331 PGOHUM00000302458 +HGNC:43949 WBP1LP2 WW domain binding protein 1-like pseudogene 2 pseudogene pseudogene Approved 7q22.3 07q22.3 2012-05-16 2014-12-01 100506330 ENSG00000250474 OTTHUMG00000154776 NG_029261 PGOHUM00000302890 +HGNC:43958 WBP1LP3 WW domain binding protein 1-like pseudogene 3 pseudogene pseudogene Approved 8p23.3 08p23.3 2012-05-16 2014-12-01 106479031 ENSG00000253612 OTTHUMG00000163907 NG_044349 PGOHUM00000303398 +HGNC:43951 WBP1LP4 WW domain binding protein 1-like pseudogene 4 pseudogene pseudogene Approved 5q35.3 05q35.3 2012-05-16 2014-12-01 106480779 ENSG00000251035 OTTHUMG00000162075 NG_043998 PGOHUM00000300855 +HGNC:43957 WBP1LP5 WW domain binding protein 1-like pseudogene 5 pseudogene pseudogene Approved 15q26.3 15q26.3 2012-05-16 2014-12-01 106480780 ENSG00000259454 OTTHUMG00000172270 NG_044007 PGOHUM00000293095 +HGNC:43956 WBP1LP6 WW domain binding protein 1-like pseudogene 6 pseudogene pseudogene Approved 1p36.33 01p36.33 2012-05-16 2012-05-16 2014-12-01 106481797 ENSG00000268663 OTTHUMG00000002340 NG_043960 PGOHUM00000296181 +HGNC:43955 WBP1LP7 WW domain binding protein 1-like pseudogene 7 pseudogene pseudogene Approved 1p36.33 01p36.33 2012-05-16 2014-12-01 106479030 ENSG00000269732 OTTHUMG00000002859 NG_044339 PGOHUM00000296173 +HGNC:51468 WBP1LP8 WW domain binding protein 1-like pseudogene 8 pseudogene pseudogene Approved 6q27 06q27 2014-12-01 2014-12-01 106480325 ENSG00000273640 OTTHUMG00000187659 NG_044462 PGOHUM00000301636 +HGNC:51469 WBP1LP9 WW domain binding protein 1-like pseudogene 9 pseudogene pseudogene Approved 9q34.3 09q34.3 2014-12-01 2014-12-01 107403079 NG_046797 PGOHUM00000304070 +HGNC:51470 WBP1LP10 WW domain binding protein 1-like pseudogene 10 pseudogene pseudogene Approved 11p15.5 11p15.5 2014-12-01 2014-12-01 106480326 ENSG00000253826 OTTHUMG00000165075 NG_044472 PGOHUM00000290769 +HGNC:51471 WBP1LP11 WW domain binding protein 1-like pseudogene 11 pseudogene pseudogene Approved 19p13.3 19p13.3 2014-12-01 2014-12-01 106481969 ENSG00000267792 OTTHUMG00000180455 NG_043323 PGOHUM00000295159 +HGNC:51472 WBP1LP12 WW domain binding protein 1-like pseudogene 12 pseudogene pseudogene Approved 6p25.3 06p25.3 2014-12-01 2014-12-01 106480327 ENSG00000271530 OTTHUMG00000184610 NG_045865 PGOHUM00000301638 +HGNC:12738 WBP2 WW domain binding protein 2 protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "WBP-2|GRAMD6" GRAM domain containing 1146 1999-11-26 2016-04-05 23558 ENSG00000132471 OTTHUMG00000179896 uc060kdn.1 U79458 NM_012478 "CCDS11731|CCDS82206" Q969T9 "7644498|26881968|23233354" MGI:104709 RGD:620032 WBP2 606962 +HGNC:28389 WBP2NL WBP2 N-terminal like protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "FLJ26145|MGC26816|PAWP|GRAMD7" postacrosomal sheath WW domain-binding protein GRAM domain containing 1146 2006-06-22 2015-11-17 164684 ENSG00000183066 OTTHUMG00000151270 uc003bbt.4 BC022546 NM_152613 CCDS14029 Q6ICG8 17289678 MGI:1921966 RGD:1586458 WBP2NL 610981 +HGNC:31695 WBP2P1 WW domain binding protein 2 pseudogene 1 pseudogene pseudogene Approved 18q11.2 18q11.2 2008-10-01 2008-10-01 147468 ENSG00000229248 OTTHUMG00000179508 NG_006941 +HGNC:12739 WBP4 WW domain binding protein 4 protein-coding gene gene with protein product Approved 13q14.11 13q14.11 "FBP21|MGC117310" formin binding protein 21 1999-09-16 2012-10-17 2016-10-05 11193 ENSG00000120688 OTTHUMG00000016784 uc001uxt.4 AF071185 NM_007187 CCDS9375 O75554 9724750 MGI:109568 RGD:620033 WBP4 604981 +HGNC:16461 WBP11 WW domain binding protein 11 protein-coding gene gene with protein product Approved 12p12.3 12p12.3 "NPWBP|SIPP1|PPP1R165" "splicing factor, PQBP1 and PP1 interacting|protein phosphatase 1, regulatory subunit 165" Protein phosphatase 1 regulatory subunits 694 2001-08-28 2014-11-19 51729 ENSG00000084463 OTTHUMG00000168737 uc001rci.4 AB029309 NM_016312 CCDS8666 Q9Y2W2 10593949 MGI:1891823 RGD:1307911 WBP11 +HGNC:26250 WBP11P1 WW domain binding protein 11 pseudogene 1 pseudogene pseudogene Approved 18q12.1 18q12.1 HsT3017 2007-05-15 2007-05-15 441818 ENSG00000260389 OTTHUMG00000177061 BC059403 NR_003558 +HGNC:12740 WBS2 Williams-Beuren syndrome type 2 phenotype phenotype only Approved 4q33-q35.1 04q33-q35.1 WS WBS 1992-12-14 1998-08-12 7457 1583646 +HGNC:12746 WBSCR2 Williams-Beuren syndrome chromosome region 2 other region Approved 7q11.23 07q11.23 WSCR2 1997-09-12 2008-06-11 7459 8812460 +HGNC:16347 WBSCR17 Williams-Beuren syndrome chromosome region 17 protein-coding gene gene with protein product Approved 7q11.22 07q11.22 "GALNTL3|GalNAc-T5L" "polypeptide N-acetylgalactosaminyltransferase-like 3|polypeptide GalNAc transferase 3" Polypeptide N-acetylgalactosaminyltransferases 433 2001-08-08 2016-10-05 64409 ENSG00000185274 OTTHUMG00000129783 uc003tvy.5 AF410457 NM_022479 CCDS5540 Q6IS24 "12073013|15744064|22787146" MGI:2137594 RGD:1563452 WBSCR17 615137 +HGNC:16405 WBSCR22 Williams-Beuren syndrome chromosome region 22 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "MGC19709|MGC2022|MGC5140|PP3381|WBMT|MERM1" metastasis-related methyltransferase 1 Williams Beuren syndrome chromosome region 22 2001-08-24 2016-03-15 2016-09-30 114049 ENSG00000071462 OTTHUMG00000023306 uc003tyt.4 AF420248 NM_001202560 "CCDS5557|CCDS56490" O43709 "12073013|11978965|21148752" MGI:1913388 RGD:1589742 WBSCR22 615733 2.1.1.- +HGNC:16498 WBSCR23 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:19068 WBSCR27 Williams Beuren syndrome chromosome region 27 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 2004-07-05 2014-11-19 155368 ENSG00000165171 OTTHUMG00000130033 uc003tzj.3 AF534110 NM_152559 CCDS5561 Q8N6F8 MGI:1933146 RGD:1588881 WBSCR27 612546 +HGNC:23018 WBSCR28 Williams-Beuren syndrome chromosome region 28 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 MGC26719 2006-07-04 2016-05-12 135886 ENSG00000175877 OTTHUMG00000157243 uc003tzk.2 BC030643 NM_182504 CCDS43597 Q6UE05 8812460 MGI:1923879 RGD:1561903 WBSCR28 612547 +HGNC:26157 WDCP WD repeat and coiled coil containing protein-coding gene gene with protein product Approved 2p23.3 02p23.3 FLJ21945 C2orf44 chromosome 2 open reading frame 44 2006-07-26 2016-04-22 2016-04-22 2016-04-22 80304 ENSG00000163026 OTTHUMG00000125498 uc002rep.3 AK025598 NM_025203 "CCDS1705|CCDS46229" Q9H6R7 "22327622|25469238" MGI:3040699 RGD:1563701 616234 +HGNC:20451 WDFY1 WD repeat and FYVE domain containing 1 protein-coding gene gene with protein product Approved 2q36.1 02q36.1 "KIAA1435|FENS-1|WDF1|ZFYVE17" WD40 and FYVE domain containing 1 "Zinc fingers FYVE-type|WD repeat domain containing" "81|362" 2003-03-03 2003-03-13 2016-10-05 57590 ENSG00000085449 OTTHUMG00000153370 uc002vnq.4 AB037856 NM_020830 CCDS33387 Q8IWB7 11739631 MGI:1916618 RGD:1305996 WDFY1 +HGNC:20482 WDFY2 WD repeat and FYVE domain containing 2 protein-coding gene gene with protein product Approved 13q14.3 13q14.3 ZFYVE22 WD40 and FYVE domain containing 2 "Zinc fingers FYVE-type|WD repeat domain containing" "81|362" 2003-03-03 2003-03-13 2016-10-05 115825 ENSG00000139668 OTTHUMG00000017407 uc001vfp.4 AF411978 NM_052950 CCDS9429 Q96P53 MGI:2442811 RGD:1307337 WDFY2 610418 +HGNC:40922 WDFY2-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:20751 WDFY3 WD repeat and FYVE domain containing 3 protein-coding gene gene with protein product Approved 4q21.23 04q21.23 "KIAA0993|ALFY|ZFYVE25" "Zinc fingers FYVE-type|WD repeat domain containing|BEACH domain containing " "81|362|1230" 2003-03-28 2016-10-05 23001 ENSG00000163625 OTTHUMG00000130424 uc003hpd.4 AB023210 NM_014991 CCDS3609 Q8IZQ1 10231032 MGI:1096875 RGD:1307097 WDFY3 +HGNC:40935 WDFY3-AS1 WDFY3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q21.23 04q21.23 WDFY3 antisense RNA 1 (non-protein coding) 2011-08-11 2012-08-15 2014-11-19 100874023 ENSG00000251260 OTTHUMG00000160941 uc062xxl.1 +HGNC:21603 WDFY3-AS2 WDFY3 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 4q21.23 04q21.23 FBI4 "C4orf12|NCRNA00247" "chromosome 4 open reading frame 12|non-protein coding RNA 247|WDFY3 antisense RNA 2 (non-protein coding)" 2005-06-30 2013-12-05 2013-12-05 2016-10-05 404201 ENSG00000180769 OTTHUMG00000141281 uc003hpg.3 AY250185 NR_015359 15580561 +HGNC:29323 WDFY4 WDFY family member 4 protein-coding gene gene with protein product Approved 10q11.23 10q11.23 "KIAA1607|Em:AC060234.3|FLJ45748" C10orf64 chromosome 10 open reading frame 64 "WD repeat domain containing|BEACH domain containing " "362|1230" 2004-02-05 2015-09-03 57705 ENSG00000128815 OTTHUMG00000018180 uc057tdq.1 AK074085 XM_033379 CCDS44385 Q6ZS81 10997877 MGI:3584510 RGD:1564142 WDFY4 613316 +HGNC:23170 WDHD1 WD repeat and HMG-box DNA binding protein 1 protein-coding gene gene with protein product Approved 14q22.2-q22.3 14q22.2-q22.3 "AND-1|CTF4|CHTF4" CTF4, chromosome transmission fidelity factor 4 homolog (S. cerevisiae) WD repeat domain containing 362 2003-11-13 2016-10-11 11169 ENSG00000198554 OTTHUMG00000140304 uc001xbm.3 AJ006266 NM_007086 "CCDS9721|CCDS41955" O75717 "9175701|20028748" MGI:2443514 RGD:1310200 WDHD1 608126 +HGNC:28027 WDPCP WD repeat containing planar cell polarity effector protein-coding gene gene with protein product Approved 2p15 02p15 "hFrtz|fritz|BBS15" C2orf86 chromosome 2 open reading frame 86 Bardet-Biedl syndrome associated 980 2009-02-25 2011-02-01 2011-02-01 2014-11-19 51057 ENSG00000143951 OTTHUMG00000152566 uc002sch.4 NM_015910 "CCDS42688|CCDS46301" O95876 "15654087|20671153" MGI:2144467 RGD:1309501 WDPCP 613580 247155 +HGNC:12754 WDR1 WD repeat domain 1 protein-coding gene gene with protein product Approved 4p16.1 04p16.1 WD repeat domain containing 362 1999-04-23 2015-08-26 9948 ENSG00000071127 OTTHUMG00000160253 uc032tce.2 AF020260 XM_017008880 "CCDS54739|CCDS54740" O75083 10036186 MGI:1337100 RGD:1305789 WDR1 604734 +HGNC:12755 WDR3 WD repeat domain 3 protein-coding gene gene with protein product Approved 1p12 01p12 "FLJ12796|UTP12|DIP2" "WD repeat domain containing|UTPB complex" "362|1225" 1998-11-30 2015-08-26 10885 ENSG00000065183 OTTHUMG00000012197 uc010oxe.2 AF083217 NM_006784 CCDS898 Q9UNX4 10395803 MGI:2443143 RGD:1307480 WDR3 604737 +HGNC:12756 WDR4 WD repeat domain 4 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 "TRM82|TRMT82" TRM82 tRNA methyltransferase 82 homolog (S. cerevisiae) WD repeat domain containing 362 1999-07-19 2015-08-26 10785 ENSG00000160193 OTTHUMG00000086826 uc002zci.5 AJ243912 XM_017028262 CCDS13691 P57081 12403464 MGI:1889002 RGD:1585179 WDR4 605924 +HGNC:12757 WDR5 WD repeat domain 5 protein-coding gene gene with protein product Approved 9q34.2 09q34.2 "SWD3|CFAP89" "SWD3, Set1c WD40 repeat protein, homolog (S. cerevisiae)|cilia and flagella associated protein 89" "WD repeat domain containing|ATAC complex" "362|1058" 1999-08-23 2016-10-05 11091 ENSG00000196363 OTTHUMG00000131707 uc004cey.4 AJ011376 NM_052821 CCDS6981 P61964 11551928 MGI:2155884 RGD:1305159 WDR5 609012 objectId:2831 +HGNC:17826 WDR5B WD repeat domain 5B protein-coding gene gene with protein product Approved 3q21.1 03q21.1 FLJ11287 WD repeat domain containing 362 2002-01-29 2013-01-09 54554 ENSG00000196981 OTTHUMG00000159489 uc003efa.2 AK002149 NM_019069 CCDS3012 Q86VZ2 10369878 MGI:1916794 RGD:1308567 WDR5B +HGNC:12758 WDR6 WD repeat domain 6 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 WD repeat domain containing 362 1999-09-07 2015-08-26 11180 ENSG00000178252 OTTHUMG00000133546 uc062jnu.1 AF099100 NM_018031 "CCDS2782|CCDS82772" Q9NNW5 MGI:1930140 RGD:1307649 WDR6 606031 +HGNC:13490 WDR7 WD repeat domain 7 protein-coding gene gene with protein product Approved 18q21.31 18q21.31 "KIAA0541|TRAG" WD repeat domain containing 362 2000-09-19 2015-08-26 23335 ENSG00000091157 OTTHUMG00000132721 uc002lgk.2 AB011113 XM_006722431 "CCDS11962|CCDS11963" Q9Y4E6 10828621 MGI:1860197 RGD:619836 WDR7 613473 +HGNC:45131 WDR7-OT1 WDR7 overlapping transcript 1 non-coding RNA RNA, long non-coding Approved 18q21.31 18q21.31 "WDR7-UA1|WDR7-UT1" "WDR7 3'UTR-associated RNA 1|WDR7 overlapping transcript 1 (non-protein coding)" 2013-02-21 2013-10-31 2014-06-02 2014-06-02 105601840 ENSG00000267225 OTTHUMG00000180085 DA634713 +HGNC:13831 WDR11 WD repeat domain 11 protein-coding gene gene with protein product Approved 10q26.12 10q26.12 "KIAA1351|FLJ10506|WDR15|HH14|DR11|SRI1" sensitization to ricin complex subunit 1 BRWD2 bromodomain and WD repeat domain containing 2 WD repeat domain containing 362 2000-11-20 2010-01-06 2010-01-06 2016-10-05 55717 ENSG00000120008 OTTHUMG00000019171 uc021pzt.2 AF320223 XM_017016397 CCDS7619 Q9BZH6 "10718198|11536051|23394947" MGI:1920230 RGD:1587347 WDR11 606417 244406 +HGNC:27437 WDR11-AS1 WDR11 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q26.12 10q26.12 WDR11 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 283089 ENSG00000227165 OTTHUMG00000019169 uc057wjr.1 AK094649 NR_033850 +HGNC:14098 WDR12 WD repeat domain 12 protein-coding gene gene with protein product Approved 2q33.2 02q33.2 "YTM1|FLJ10881" WD repeat domain containing 362 2001-07-09 2016-10-05 55759 ENSG00000138442 OTTHUMG00000132855 uc002uzl.4 AF242546 NM_018256 CCDS2356 Q9GZL7 "16043514|17353269" MGI:1927241 RGD:735072 WDR12 616620 +HGNC:14352 WDR13 WD repeat domain 13 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 WD repeat domain containing 362 2001-01-11 2015-08-26 64743 ENSG00000101940 OTTHUMG00000024119 uc064yzh.1 AF329819 XM_011543947 CCDS14302 Q9H1Z4 MGI:1914661 RGD:1560982 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=WDR13 WDR13 300512 +HGNC:16661 WDR17 WD repeat domain 17 protein-coding gene gene with protein product Approved 4q34.2 04q34.2 WD repeat domain containing 362 2001-10-26 2016-10-05 116966 ENSG00000150627 OTTHUMG00000160791 uc003iuj.4 AF492460 XM_017007686 "CCDS3825|CCDS43284" Q8IZU2 12401215 MGI:1924662 RGD:1590843 WDR17 609005 +HGNC:17956 WDR18 WD repeat domain 18 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 Ipi3 Involved in Processing ITS2 3 homolog (S. cerevisiae) "WD repeat domain containing|5FMC ribosome biogenesis complex" "362|1301" 2002-01-10 2015-08-26 57418 ENSG00000065268 OTTHUMG00000181903 uc002lqm.2 XM_017027027 CCDS12051 Q9BV38 22190735 MGI:2158400 RGD:1310646 WDR18 +HGNC:18340 WDR19 WD repeat domain 19 protein-coding gene gene with protein product Approved 4p14 04p14 "Pwdmp|KIAA1638|FLJ23127|ORF26|DYF-2|Oseg6|IFT144|NPHP13" intraflagellar transport 144 homolog (Chlamydomonas) "WD repeat domain containing|Intraflagellar transport proteins" "362|615" 2002-04-26 2015-08-26 57728 ENSG00000157796 OTTHUMG00000160466 uc003gtv.3 "AB046858|AY029257" XM_011513725 CCDS47042 Q8NEZ3 "12906858|22019273" MGI:2443231 RGD:1306997 WDR19 608151 285468 +HGNC:19667 WDR20 WD repeat domain 20 protein-coding gene gene with protein product Approved 14q32.31 14q32.31 "DMR|MGC33177|FLJ33659" WD repeat domain containing 362 2002-11-13 2015-07-22 91833 ENSG00000140153 OTTHUMG00000171753 uc001ykz.4 BC028387 NM_181291 "CCDS9968|CCDS9969|CCDS9970|CCDS55942|CCDS55943|CCDS55944|CCDS55945|CCDS81853" Q8TBZ3 MGI:1918198 RGD:1306499 WDR20 +HGNC:20852 WDR24 WD repeat domain 24 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "DKFZp434F054|JFP7" C16orf21 chromosome 16 open reading frame 21 WD repeat domain containing 362 2003-05-08 2014-11-19 84219 ENSG00000127580 OTTHUMG00000090421 uc002ciz.2 AL136863 NM_032259 CCDS10420 Q96S15 11230166 MGI:2446285 RGD:1304803 WDR24 +HGNC:21064 WDR25 WD repeat domain 25 protein-coding gene gene with protein product Approved 14q32.32 14q32.32 MGC4645 C14orf67 chromosome 14 open reading frame 67 WD repeat domain containing 362 2005-10-04 2015-08-26 79446 ENSG00000176473 OTTHUMG00000171585 uc010avx.4 BC007953 NM_024515 CCDS32157 Q64LD2 15587985 MGI:3045255 RGD:1562505 WDR25 +HGNC:21208 WDR26 WD repeat domain 26 protein-coding gene gene with protein product Approved 1q42.11-q42.12 01q42.11-q42.12 "FLJ21016|GID7" GID complex subunit 7 homolog (S. cerevisiae) WD repeat domain containing 362 2003-07-14 2016-10-11 80232 ENSG00000162923 OTTHUMG00000037636 uc001hop.4 AK024669 NM_025160 CCDS31037 Q9H7D7 MGI:1923825 RGD:1565589 WDR26 +HGNC:21248 WDR27 WD repeat domain 27 protein-coding gene gene with protein product Approved 6q27 06q27 MGC43690 WD repeat domain containing 362 2004-01-15 2003-06-18 2016-10-12 253769 ENSG00000184465 OTTHUMG00000016061 uc003qwx.4 AK131435 NM_182552 "CCDS47520|CCDS56459" A2RRH5 MGI:1918932 RGD:1309633 LRG_1071|http://www.lrg-sequence.org/LRG/LRG_1071 WDR27 +HGNC:21421 WDR31 WD repeat domain 31 protein-coding gene gene with protein product Approved 9q32 09q32 FLJ35921 similar to spermatid WD-repeat protein WD repeat domain containing 362 2003-11-25 2016-10-05 114987 ENSG00000148225 OTTHUMG00000020525 uc064vdu.1 BC012352 NM_145241 "CCDS6792|CCDS35110" Q8NA23 MGI:1918604 RGD:1309367 WDR31 +HGNC:25651 WDR33 WD repeat domain 33 protein-coding gene gene with protein product Approved 2q14.3 02q14.3 "FLJ11294|WDC146|NET14" WD repeat domain containing 362 2004-02-16 2016-10-05 55339 ENSG00000136709 OTTHUMG00000131534 uc002tpg.3 NM_018383 "CCDS2150|CCDS42746|CCDS46407" Q9C0J8 11162572 MGI:1921570 RGD:1309230 WDR33 +HGNC:28296 WDR34 WD repeat domain 34 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "DIC5|MGC20486|bA216B9.3|FAP133" WD repeat domain containing 362 2004-02-17 2013-02-19 2013-02-19 2014-11-18 89891 ENSG00000119333 OTTHUMG00000020750 uc004bvq.2 BC011874 NM_052844 CCDS6906 Q96EX3 "19521662|21953912|24183451" MGI:1919070 RGD:1359465 WDR34 613363 371931 +HGNC:29250 WDR35 WD repeat domain 35 protein-coding gene gene with protein product Approved 2p24.1 02p24.1 "MGC33196|KIAA1336|IFT121|IFTA1" "WD repeat domain containing|Intraflagellar transport proteins" "362|615" 2004-03-02 2016-10-05 57539 ENSG00000118965 OTTHUMG00000090737 uc002rdj.5 AB037757 NM_020779 "CCDS1695|CCDS33152" Q9P2L0 10718198 MGI:1921932 RGD:1564116 WDR35 613602 239955 +HGNC:30696 WDR36 WD repeat domain 36 protein-coding gene gene with protein product Approved 5q22.1 05q22.1 "TA-WDRP|UTP21" GLC1G glaucoma 1, open angle, G "WD repeat domain containing|UTPB complex" "362|1225" 2004-03-16 2016-10-05 134430 ENSG00000134987 OTTHUMG00000128790 uc063fxy.1 AF385437 NM_139281 CCDS4102 Q8NI36 "15590835|15677485" MGI:1917819 RGD:1586463 WDR36 609669 120509 +HGNC:31406 WDR37 WD repeat domain 37 protein-coding gene gene with protein product Approved 10p15.3 10p15.3 KIAA0982 WD repeat domain containing 362 2004-04-06 2014-11-19 22884 ENSG00000047056 OTTHUMG00000017540 uc031ptc.1 AB023199 NM_014023 CCDS7057 Q9Y2I8 "10231032|11230166" MGI:1920393 RGD:1306189 WDR37 +HGNC:23745 WDR38 WD repeat domain 38 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 WD repeat domain containing 362 2007-05-31 2014-11-19 401551 ENSG00000136918 OTTHUMG00000020664 uc004box.5 NM_001045476 "CCDS43876|CCDS75898|CCDS75899" Q5JTN6 MGI:1923896 RGD:1562587 WDR38 +HGNC:25601 WDR41 WD repeat domain 41 protein-coding gene gene with protein product Approved 5q13.3-q14.1 05q13.3-q14.1 FLJ10904 WD repeat domain containing 362 2004-06-24 2016-10-11 55255 ENSG00000164253 OTTHUMG00000102169 uc003kff.2 AF115511 NM_018268 CCDS4038 Q9HAD4 12477932 MGI:2445123 RGD:1306363 WDR41 +HGNC:28945 WDR43 WD repeat domain 43 protein-coding gene gene with protein product Approved 2p23.2 02p23.2 "KIAA0007|NET12|UTP5" UTP5, small subunit (SSU) processome component, homolog (yeast) WD repeat domain containing 362 2004-09-01 2016-10-05 23160 ENSG00000163811 OTTHUMG00000152015 uc002rmo.3 D87716 XM_087089 CCDS46251 Q15061 "7584026|7584028|17699751" MGI:1919765 RGD:1565005 WDR43 616195 +HGNC:30512 WDR44 WD repeat domain 44 protein-coding gene gene with protein product Approved Xq24 Xq24 "DKFZp686L20145|RPH11|RAB11BP" WD repeat domain containing 362 2004-09-02 2014-11-18 54521 ENSG00000131725 OTTHUMG00000022254 uc004eqn.4 AK001978 NM_019045 "CCDS14572|CCDS55482|CCDS55483" Q5JSH3 12477932 MGI:1919654 RGD:727965 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=WDR44 WDR44 +HGNC:28912 WDR45 WD repeat domain 45 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "JM5|WIPI4|NBIA5" neurodegeneration with brain iron accumulation 5 WDRX1 WD repeat domain, X-linked 1 WD repeat domain containing 362 2004-06-02 2004-09-03 2004-09-02 2015-08-26 11152 ENSG00000196998 OTTHUMG00000034500 uc004dmp.2 BC003037 NM_007075 "CCDS14318|CCDS35250" Q9Y484 12477932 MGI:1859606 RGD:1359718 WDR45 300526 331721 +HGNC:25072 WDR45B WD repeat domain 45B protein-coding gene gene with protein product Approved 17q25.3 17q25.3 WIPI3 WDR45L WDR45-like WD repeat domain containing 362 2004-09-02 2013-01-11 2013-01-11 2014-11-19 56270 ENSG00000141580 OTTHUMG00000150146 uc002kfq.3 AF091083 NM_019613 CCDS11815 Q5MNZ6 12477932 MGI:1914090 RGD:1305141 609226 +HGNC:26605 WDR45BP1 WD repeat domain 45B pseudogene 1 pseudogene pseudogene Approved 17q11.2 17q11.2 WDR45LP1 WDR45-like pseudogene 1 2004-09-03 2013-01-11 2013-01-11 2014-11-19 646086 ENSG00000265574 OTTHUMG00000179563 NG_005857 PGOHUM00000237024 +HGNC:13923 WDR46 WD repeat domain 46 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "BING4|UTP7" C6orf11 chromosome 6 open reading frame 11 WD repeat domain containing 362 2001-04-06 2005-05-31 2005-05-31 2016-10-05 9277 ENSG00000227057 OTTHUMG00000031192 uc011fqu.3 Z97184 NM_005452 CCDS4772 O15213 "9545376|9521053|24754225" MGI:1931871 RGD:2209 WDR46 611440 +HGNC:29141 WDR47 WD repeat domain 47 protein-coding gene gene with protein product Approved 1p13.3 01p13.3 KIAA0893 WD repeat domain containing 362 2004-11-12 2014-11-19 22911 ENSG00000085433 OTTHUMG00000011734 uc001dwi.4 AB020700 NM_014969 "CCDS30787|CCDS44186|CCDS44187" O94967 10048485 MGI:2139593 RGD:1309181 WDR47 615734 +HGNC:30914 WDR48 WD repeat domain 48 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "KIAA1449|P80|SPG60" WD repeat domain containing 362 2005-01-10 2016-10-05 57599 ENSG00000114742 OTTHUMG00000155972 uc003cit.4 AF468833 NM_020839 CCDS33738 Q8TAF3 "10819331|12196293|24482476" MGI:1914811 RGD:1309702 WDR48 612167 403350 +HGNC:26587 WDR49 WD repeat domain 49 protein-coding gene gene with protein product Approved 3q26.1 03q26.1 FLJ33620 WD repeat domain containing 362 2005-01-31 2015-09-03 151790 ENSG00000174776 OTTHUMG00000158290 uc003fev.2 AK097556 NM_178824 CCDS3201 Q8IV35 12477932 MGI:3645287 RGD:1564622 WDR49 +HGNC:28786 WDR53 WD repeat domain 53 protein-coding gene gene with protein product Approved 3q29 03q29 "MGC64882|MGC12928" WD repeat domain containing 362 2005-02-01 2014-11-19 348793 ENSG00000185798 OTTHUMG00000155572 uc003fwt.4 BC054030 NM_182627 CCDS3318 Q7Z5U6 12477932 MGI:1916230 RGD:1559546 WDR53 615110 +HGNC:25770 WDR54 WD repeat domain 54 protein-coding gene gene with protein product Approved 2p13.1 02p13.1 FLJ12953 WD repeat domain containing 362 2005-02-08 2014-11-19 84058 ENSG00000005448 OTTHUMG00000129951 uc002slb.4 AK023015 NM_032118 "CCDS1940|CCDS82473" Q9H977 12477932 MGI:1922909 RGD:1561494 WDR54 +HGNC:25971 WDR55 WD repeat domain 55 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "FLJ20195|FLJ21702" WD repeat domain containing 362 2005-02-24 2014-11-19 54853 ENSG00000120314 OTTHUMG00000129506 uc003lgr.5 AK000202 NM_017706 CCDS4235 Q9H6Y2 12477932 MGI:1915186 WDR55 +HGNC:25706 WDR59 WD repeat domain 59 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 FLJ12270 WD repeat domain containing 362 2005-04-12 2015-07-22 79726 ENSG00000103091 OTTHUMG00000170831 uc002fdh.2 AB067510 NM_030581 "CCDS32488|CCDS82011" Q6PJI9 11572484 MGI:2442115 RGD:1592213 WDR59 +HGNC:21862 WDR60 WD repeat domain 60 protein-coding gene gene with protein product Approved 7q36.3 07q36.3 "FLJ10300|FAP163" WD repeat domain containing 362 2005-04-19 2013-11-15 55112 ENSG00000126870 OTTHUMG00000151443 uc003woe.5 NM_018051 CCDS47757 Q8WVS4 23910462 MGI:2445085 RGD:1306493 WDR60 615462 363310 +HGNC:30300 WDR61 WD repeat domain 61 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 REC14 "WD repeat domain containing|Paf1/RNA polymerase II complex " "362|1029" 2005-04-26 2014-11-19 80349 ENSG00000140395 OTTHUMG00000143735 uc002bdn.4 NM_025234 "CCDS10300|CCDS76785" Q9GZS3 12477932 MGI:1917493 RGD:1308228 WDR61 609540 +HGNC:24502 WDR62 WD repeat domain 62 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "DKFZP434J046|FLJ33298" "C19orf14|MCPH2" "chromosome 19 open reading frame 14|microcephaly, primary autosomal recessive 2" WD repeat domain containing 362 2004-02-11 2005-05-09 2005-05-09 2014-11-19 284403 ENSG00000075702 OTTHUMG00000048139 uc002odc.3 BX647726 NM_015671 "CCDS33001|CCDS46059" O43379 "19910486|20729831|20890278|21496009" MGI:1923696 RGD:1306714 WDR62 613583 239949 +HGNC:30711 WDR63 WD repeat domain 63 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "DIC3|FLJ30067|NYD-SP29" WD repeat domain containing 362 2005-05-13 2013-02-19 2013-02-19 2014-11-19 126820 ENSG00000162643 OTTHUMG00000009953 uc001dkt.5 NM_145172 "CCDS702|CCDS72818" Q8IWG1 21953912 MGI:3045269 RGD:1563105 WDR63 +HGNC:26570 WDR64 WD repeat domain 64 protein-coding gene gene with protein product Approved 1q43 01q43 FLJ32978 WD repeat domain containing 362 2005-05-13 2014-11-18 128025 ENSG00000162843 OTTHUMG00000039705 uc001hzg.3 AK057540 NM_144625 B1ANS9 MGI:1923070 RGD:1591103 WDR64 +HGNC:28506 WDR66 WD repeat domain 66 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "MGC33630|CaM-IP4" WD repeat domain containing 362 2005-05-26 2014-07-31 144406 ENSG00000158023 OTTHUMG00000168948 uc009zxk.4 AL833930 NM_144668 "CCDS41853|CCDS53840" Q8TBY9 17967944 MGI:1918495 RGD:1564948 WDR66 +HGNC:25495 WDR70 WD repeat domain 70 protein-coding gene gene with protein product Approved 5p13.2 05p13.2 FLJ10233 WD repeat domain containing 362 2005-05-26 2015-08-26 55100 ENSG00000082068 OTTHUMG00000162263 uc003jkv.4 BC009648 NM_018034 CCDS34147 Q9NW82 12477932 MGI:1921020 RGD:1309487 WDR70 +HGNC:26790 WDR72 WD repeat domain 72 protein-coding gene gene with protein product Approved 15q21.3 15q21.3 FLJ38736 WD repeat domain containing 362 2005-05-26 2015-08-26 256764 ENSG00000166415 OTTHUMG00000131939 uc031qse.1 BX537884 NM_182758 "CCDS10151|CCDS73730" Q3MJ13 "19853237|25008349" MGI:3583957 RGD:1563550 WDR72 613214 225293 +HGNC:25928 WDR73 WD repeat domain 73 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "FLJ14888|HSPC264" WD repeat domain containing 362 2005-05-26 2015-07-22 84942 ENSG00000177082 OTTHUMG00000172375 uc002bkw.3 AK027200 NM_032856 CCDS45339 Q6P4I2 12477932 MGI:1919218 RGD:1306429 WDR73 616144 420151 +HGNC:25529 WDR74 WD repeat domain 74 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 FLJ10439 WD repeat domain containing 362 2005-05-27 2015-07-22 54663 ENSG00000133316 OTTHUMG00000167695 uc009yoi.3 NM_018093 "CCDS44630|CCDS76421" Q6RFH5 MGI:2147427 RGD:1582881 WDR74 +HGNC:25725 WDR75 WD repeat domain 75 protein-coding gene gene with protein product Approved 2q32.2 02q32.2 "FLJ12519|NET16|UTP17" UTP17, small subunit (SSU) processome component, homolog (yeast) WD repeat domain containing 362 2005-05-27 2014-11-18 84128 ENSG00000115368 OTTHUMG00000132660 uc002uql.2 AK091546 NM_032168 CCDS2298 Q8IWA0 17699751 MGI:1920924 RGD:1564869 WDR75 +HGNC:25773 WDR76 WD repeat domain 76 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 FLJ12973 WD repeat domain containing 362 2005-05-27 2014-11-19 79968 ENSG00000092470 OTTHUMG00000060143 uc001zti.3 AK023035 NM_024908 "CCDS10106|CCDS53938" Q9H967 12860291 MGI:1926186 RGD:1309616 WDR76 +HGNC:29652 WDR77 WD repeat domain 77 protein-coding gene gene with protein product Approved 1p13.2 01p13.2 "MEP50|p44" methylosome protein 50 WD repeat domain containing 362 2005-06-27 2005-08-09 2015-08-11 79084 ENSG00000116455 OTTHUMG00000011748 uc001ebb.4 BC016946 NM_024102 CCDS835 Q9BQA1 "11756452|8619474" MGI:1917715 RGD:1310479 WDR77 611734 +HGNC:26252 WDR78 WD repeat domain 78 protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "DIC4|FLJ23129" WD repeat domain containing 362 2005-07-18 2013-02-19 2013-02-19 2016-10-05 79819 ENSG00000152763 OTTHUMG00000009165 uc001dcx.5 BX648840 NM_024763 "CCDS635|CCDS44157" Q5VTH9 21953912 MGI:2385328 RGD:1311027 WDR78 +HGNC:26600 WDR81 WD repeat domain 81 protein-coding gene gene with protein product Approved 17p13.3 17p13.3 "FLJ33817|PPP1R166|CAMRQ2|SORF-2" protein phosphatase 1, regulatory subunit 166 "WD repeat domain containing|Protein phosphatase 1 regulatory subunits|BEACH domain containing " "362|694|1230" 2005-12-16 2016-05-03 124997 ENSG00000167716 OTTHUMG00000153941 uc010vqp.1 AK074111 NM_152348 "CCDS54061|CCDS54062|CCDS54063" Q562E7 "21885617|26783301|27126989" MGI:2681828 RGD:1311334 WDR81 614218 327288 +HGNC:28826 WDR82 WD repeat domain 82 protein-coding gene gene with protein product Approved 3p21.2 03p21.2 "PRO2730|MST107|MSTP107|PRO34047|WDR82A|SWD2" TMEM113 transmembrane protein 113 WD repeat domain containing 362 2006-01-06 2007-07-04 2007-07-04 2014-11-19 80335 ENSG00000164091 OTTHUMG00000150391 uc003ddl.3 AF132207 NM_025222 CCDS2851 Q6UXN9 17355966 MGI:1924555 RGD:1584269 WDR82 611059 +HGNC:32447 WDR82P1 WD repeat domain 82 pseudogene 1 pseudogene pseudogene Approved 3q11.2 03q11.2 "SW2|hCG26824|WDR82B" WDR82 WD repeat domain 82 2006-01-06 2007-07-04 2007-07-04 2015-03-27 728505 ENSG00000234629 OTTHUMG00000159020 XM_001127580 PGOHUM00000237686 +HGNC:33513 WDR82P2 WD repeat domain 82 pseudogene 2 pseudogene pseudogene Approved 1p22.1 01p22.1 WDR82C 2007-07-04 2007-07-04 2014-11-25 441891 ENSG00000241318 OTTHUMG00000010094 NG_006032 PGOHUM00000295744 +HGNC:32672 WDR83 WD repeat domain 83 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 MORG1 MAPK organizer 1 WD repeat domain containing 362 2010-01-25 2013-01-09 84292 ENSG00000123154 OTTHUMG00000169356 uc002mue.5 AK074525 NM_032332 CCDS12275 Q9BRX9 "15118098|16407229" MGI:1915086 RGD:1306947 WDR83 616850 +HGNC:30203 WDR83OS WD repeat domain 83 opposite strand protein-coding gene gene with protein product Approved 19p13.13 19p13.13 PTD008 C19orf56 chromosome 19 open reading frame 56 2006-08-21 2011-11-24 2011-11-24 2016-10-05 51398 ENSG00000105583 OTTHUMG00000182617 uc002mud.3 AF151898 NM_016145 CCDS12274 Q9Y284 10810093 MGI:3041257 RGD:1564058 +HGNC:28020 WDR86 WD repeat domain 86 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 WD repeat domain containing 362 2006-07-06 2015-08-26 349136 ENSG00000187260 OTTHUMG00000150764 uc003wkb.3 AK125347 NM_198285 "CCDS5925|CCDS64805|CCDS64806|CCDS75680" Q86TI4 12477932 MGI:1915466 RGD:1566180 WDR86 +HGNC:41186 WDR86-AS1 WDR86 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q36.1 07q36.1 WDR86 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2014-11-19 100131176 ENSG00000243836 OTTHUMG00000157360 uc033apx.2 AK095986 NR_034012 +HGNC:29934 WDR87 WD repeat domain 87 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 NYD-SP11 WD repeat domain containing 362 2006-07-06 2015-09-03 83889 ENSG00000171804 OTTHUMG00000048187 uc010efu.3 AK128826 NM_031951 "CCDS46063|CCDS74356" Q6ZQQ6 MGI:2149781 RGD:9407641 WDR87 +HGNC:26999 WDR88 WD repeat domain 88 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 PQWD PQQ repeat and WD repeat domain containing WD repeat domain containing 362 2006-07-06 2007-04-04 2007-04-04 2015-09-08 126248 ENSG00000166359 OTTHUMG00000180342 uc002nui.4 BC031227 NM_173479 CCDS12429 Q6ZMY6 12477932 MGI:2686275 RGD:1560122 WDR88 +HGNC:20489 WDR89 WD repeat domain 89 protein-coding gene gene with protein product Approved 14q23.2 14q23.2 MGC9907 C14orf150 WD repeat domain containing 362 2004-06-11 2006-07-07 2014-11-18 112840 ENSG00000140006 OTTHUMG00000140340 uc059chs.1 AF115513 NM_080666 CCDS9759 Q96FK6 MGI:1919588 RGD:1307393 WDR89 +HGNC:26960 WDR90 WD repeat domain 90 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ36483|KIAA1924" "C16orf17|C16orf15|C16orf16|C16orf19|C16orf18" "chromosome 16 open reading frame 17|chromosome 16 open reading frame 15|chromosome 16 open reading frame 16|chromosome 16 open reading frame 19|chromosome 16 open reading frame 18" WD repeat domain containing 362 2006-07-07 2015-08-26 197335 ENSG00000161996 OTTHUMG00000048040 uc002cii.2 AB067511 NM_145294 CCDS42092 Q96KV7 "11572484|11157797" MGI:1921267 RGD:7520481 WDR90 +HGNC:24997 WDR91 WD repeat domain 91 protein-coding gene gene with protein product Approved 7q33 07q33 "HSPC049|SORF-1" WD repeat domain containing 362 2007-06-18 2016-03-01 29062 ENSG00000105875 OTTHUMG00000155414 uc003vsp.3 AF161534 NM_014149 CCDS34758 A4D1P6 26783301 MGI:2141558 RGD:1306697 WDR91 616303 +HGNC:25176 WDR92 WD repeat domain 92 protein-coding gene gene with protein product Approved 2p14 02p14 "FLJ31741|Monad" WD repeat domain containing 362 2007-07-11 2014-11-18 116143 ENSG00000243667 OTTHUMG00000152561 uc002see.3 AK056303 NM_138458 "CCDS1884|CCDS58712" Q96MX6 16487927 MGI:2144224 RGD:1563863 WDR92 610729 +HGNC:26924 WDR93 WD repeat domain 93 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 WD repeat domain containing 362 2007-11-19 2015-07-22 56964 ENSG00000140527 OTTHUMG00000172007 uc002boj.3 NM_020212 "CCDS32326|CCDS66862|CCDS73779" Q6P2C0 22573824 MGI:3646885 RGD:1559862 WDR93 +HGNC:42637 WDR95P WD repeat domain 95, pseudogene pseudogene pseudogene Approved 13q12.3 13q12.3 WD40 repeat domain 95, pseudogene WD repeat domain containing 362 2011-08-10 2014-04-14 2014-11-18 100873795 ENSG00000231894 OTTHUMG00000016687 NG_032519 +HGNC:26959 WDR97 WD repeat domain 97 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 KIAA1875 KIAA1875 WD repeat domain containing 362 2005-09-23 2015-10-09 2015-10-09 2015-10-09 340390 ENSG00000179698 OTTHUMG00000165245 AB058778 NM_001316309 CCDS83334 A6NE52 11347906 MGI:5594498 RGD:1562063 +HGNC:26697 WDSUB1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding gene gene with protein product Approved 2q24.2 02q24.2 "UBOX6|FLJ36175" WDSAM1 "WD repeat and SAM domain containing 1|WD repeat, SAM and U-box domain containing 1" "WD repeat domain containing|U-box domain containing|Sterile alpha motif domain containing" "362|365|760" 2004-07-15 2005-03-25 2006-02-17 2014-11-18 151525 ENSG00000196151 OTTHUMG00000132028 uc002ual.5 AK093494 NM_152528 "CCDS2208|CCDS77477|CCDS82525" Q8N9V3 12477932 MGI:1919387 RGD:1359296 WDSUB1 +HGNC:29175 WDTC1 WD and tetratricopeptide repeats 1 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "KIAA1037|ADP|DCAF9" "adipose homolog (Drosophila)|DDB1 and CUL4 associated factor 9" "WD repeat domain containing|DDB1 and CUL4 associated factors|Tetratricopeptide repeat domain containing" "362|498|769" 2003-12-22 2016-10-05 23038 ENSG00000142784 OTTHUMG00000004273 uc001bno.5 AK023778 NM_015023 "CCDS296|CCDS60044" Q8N5D0 "12717455|19238144" MGI:2685541 RGD:1310362 WDTC1 +HGNC:25490 WDYHV1 WDYHV motif containing 1 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 FLJ10204 C8orf32 chromosome 8 open reading frame 32 2005-07-18 2008-10-01 2008-10-01 2015-07-22 55093 ENSG00000156795 OTTHUMG00000165093 uc003yqn.3 AK001066 NM_018024 "CCDS6344|CCDS64965" Q96HA8 12477932 MGI:1924023 RGD:1311362 WDYHV1 +HGNC:12761 WEE1 WEE1 G2 checkpoint kinase protein-coding gene gene with protein product Approved 11p15.4 11p15.4 WEE1A "wee1+ (S. pombe) homolog|WEE1 homolog (S. pombe)" 1992-08-06 2013-10-21 2016-07-28 7465 ENSG00000166483 OTTHUMG00000165863 uc001mhs.4 X62048 NM_003390 "CCDS7800|CCDS44536" P30291 1840647 MGI:103075 RGD:1307895 WEE1 193525 objectId:2278 2.7.10.2 +HGNC:19684 WEE2 WEE1 homolog 2 protein-coding gene gene with protein product Approved 7q34 07q34 FLJ16107 WEE1 homolog 2 (S. pombe) 2005-01-21 2016-07-28 2016-10-05 494551 ENSG00000214102 OTTHUMG00000157536 uc003vwn.2 AK131218 NM_001105558 CCDS43660 P0C1S8 MGI:3027899 RGD:1587197 WEE2 614084 objectId:2279 2.7.10.2 +HGNC:48669 WEE2-AS1 WEE2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 7q34 07q34 2013-06-04 2013-06-04 285962 ENSG00000228775 OTTHUMG00000157538 NR_015392 +HGNC:15466 WFDC1 WAP four-disulfide core domain 1 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 PS20 WAP four-disulfide core domain containing 361 2001-03-30 2016-04-20 58189 ENSG00000103175 OTTHUMG00000137641 uc002fhw.5 AF302109 NM_021197 CCDS10946 Q9HC57 "10967136|21936833" MGI:1915116 RGD:68938 WFDC1 605322 +HGNC:15939 WFDC2 WAP four-disulfide core domain 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "HE4|WAP5|dJ461P17.6|EDDM4" epididymal protein 4 WAP four-disulfide core domain containing 361 2001-07-31 2014-11-19 10406 ENSG00000101443 OTTHUMG00000032594 uc002xoo.4 X63187 NM_006103 CCDS35501 Q14508 "1686187|10570965" MGI:1914951 RGD:628757 WFDC2 I17.004 +HGNC:15957 WFDC3 WAP four-disulfide core domain 3 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ447F3.3|WAP14" WAP four-disulfide core domain containing 361 2001-09-17 2015-09-08 140686 ENSG00000124116 OTTHUMG00000032614 uc002xpf.1 AL050348 XM_011528553 CCDS33478 Q8IUB2 "12206714|10680116" MGI:1923897 RGD:1305295 WFDC3 I17.001 +HGNC:20477 WFDC5 WAP four-disulfide core domain 5 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "WAP1|dJ211D12.5" WAP four-disulfide core domain containing 361 2003-02-21 2016-10-05 149708 ENSG00000175121 OTTHUMG00000046411 uc002xne.2 AY038181 NM_145652 CCDS33475 Q8TCV5 "12206714|10680116" MGI:2384800 RGD:1304986 WFDC5 605161 I17.003 +HGNC:16164 WFDC6 WAP four-disulfide core domain 6 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ461P17.11|WAP6" C20orf171 chromosome 20 open reading frame 171 WAP four-disulfide core domain containing 361 2001-07-17 2003-02-21 2003-02-21 2016-10-05 140870 ENSG00000243543 OTTHUMG00000046354 uc002xos.2 AL031663 NM_080827 CCDS13358 Q9BQY6 12206714 RGD:1303277 WFDC6 I17.953 +HGNC:16163 WFDC8 WAP four-disulfide core domain 8 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ461P17.1|WAP8" C20orf170 chromosome 20 open reading frame 170 WAP four-disulfide core domain containing 361 2001-07-17 2003-02-21 2003-02-21 2016-10-05 90199 ENSG00000158901 OTTHUMG00000046342 uc002xow.4 AL031663 XM_017028119 CCDS13361 Q8IUA0 12206714 MGI:2685552 RGD:1597713 WFDC8 I02.971 +HGNC:20380 WFDC9 WAP four-disulfide core domain 9 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "WAP9|dJ688G8.2" WAP four-disulfide core domain containing 361 2003-02-21 2015-08-26 259240 ENSG00000180205 OTTHUMG00000046332 uc002xoy.3 AL031671 NM_147198 CCDS13362 Q8NEX5 12206714 MGI:3652032 RGD:1303087 WFDC9 +HGNC:16139 WFDC10A WAP four-disulfide core domain 10A protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ688G8.3|WAP10" C20orf146 chromosome 20 open reading frame 146 WAP four-disulfide core domain containing 361 2001-07-17 2003-02-21 2003-02-21 2016-10-05 140832 ENSG00000180305 OTTHUMG00000046331 uc002xoz.4 AL031671 XM_017027679 CCDS13363 Q9H1F0 12206714 RGD:1596480 WFDC10A +HGNC:20479 WFDC10B WAP four-disulfide core domain 10B protein-coding gene gene with protein product Approved 20q13.12 20q13.12 WAP12 WAP four-disulfide core domain containing 361 2003-02-21 2015-09-03 280664 ENSG00000182931 OTTHUMG00000130227 uc002xpc.4 AF454506 XM_017027824 "CCDS13365|CCDS13366" Q8IUB3 12206714 WFDC10B +HGNC:20478 WFDC11 WAP four-disulfide core domain 11 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 WAP11 WAP four-disulfide core domain containing 361 2003-02-21 2015-09-03 259239 ENSG00000180083 OTTHUMG00000046330 uc061xin.1 AY047609 NM_147197 CCDS13364 Q8NEX6 12206714 RGD:1596469 WFDC11 +HGNC:16115 WFDC12 WAP four-disulfide core domain 12 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ211D12.4|WAP2" C20orf122 chromosome 20 open reading frame 122 WAP four-disulfide core domain containing 361 2001-07-17 2003-02-21 2003-02-21 2015-08-26 128488 ENSG00000168703 OTTHUMG00000046412 uc002xnf.2 Z93016 NM_080869 CCDS13343 Q8WWY7 "11779191|12206714" MGI:2183434 RGD:1303229 WFDC12 609872 I17.003 +HGNC:16131 WFDC13 WAP four-disulfide core domain 13 protein-coding gene gene with protein product Approved 20q13.11 20q13.11 "dJ601O1.3|WAP13" C20orf138 chromosome 20 open reading frame 138 WAP four-disulfide core domain containing 361 2001-07-17 2003-02-21 2003-02-21 2015-08-26 164237 ENSG00000168634 OTTHUMG00000046333 uc002xpd.3 AF454505 NM_172005 CCDS13367 Q8IUB5 12206714 MGI:3582777 RGD:2319575 WFDC13 +HGNC:50357 WFDC21P WAP four-disulfide core domain 21, pseudogene pseudogene pseudogene Approved 17q23.1 17q23.1 "LOC645638|lnc-DC|LNCDC" "long non-coding RNA, dendritic cell differentiation|WDNM1-like, pseudogene" 2014-06-16 2015-07-31 645638 ENSG00000261040 OTTHUMG00000176074 NR_030732 "24744378|26158411" MGI:1913357 615772 +HGNC:30912 WFIKKN1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "RJD2|WFIKKN|WFDC20A" WAP four-disulfide core domain 20A C16orf12 chromosome 16 open reading frame 12 "WAP four-disulfide core domain containing|I-set domain containing" "361|593" 2004-08-24 2016-10-05 117166 ENSG00000127578 OTTHUMG00000090359 uc002cht.2 AK075356 NM_053284 CCDS10414 Q96NZ8 "11274388|11928817" MGI:2670967 RGD:1565835 WFIKKN1 608021 LI90-001 +HGNC:30916 WFIKKN2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "WFIKKNRP|WFDC20B" WAP four-disulfide core domain 20B "WAP four-disulfide core domain containing|I-set domain containing" "361|593" 2004-08-24 2014-11-19 124857 ENSG00000173714 OTTHUMG00000162274 uc002isv.5 AY358142 NM_175575 "CCDS11575|CCDS82159" Q8TEU8 "11928817|12709070" MGI:2669209 RGD:1305361 WFIKKN2 610895 LI90-002 +HGNC:12762 WFS1 wolframin ER transmembrane glycoprotein protein-coding gene gene with protein product Approved 4p16.1 04p16.1 "DIDMOAD|WFS" "DFNA6|DFNA14|DFNA38" Wolfram syndrome 1 (wolframin) 1995-01-30 2016-02-17 2016-02-17 7466 ENSG00000109501 OTTHUMG00000090431 uc003gix.3 AF084481 XM_017008586 CCDS3386 O76024 "7987399|9771706" MGI:1328355 RGD:68954 Hereditary Hearing Loss Homepage|http://hereditaryhearingloss.org WFS1 606201 120514 +HGNC:30493 WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "KIAA1971|WHAMM1" WHDC1 WAS protein homology region 2 domain containing 1 Wiskott-Aldrich Syndrome protein family 14 2005-10-25 2009-02-18 2009-02-18 2015-04-21 123720 ENSG00000156232 OTTHUMG00000172422 uc002bje.5 AK126887 XM_005272421 CCDS45333 Q8TF30 "11853319|18226259|18614018|18812086" MGI:2142282 RGD:1563506 WHAMM 612393 +HGNC:32361 WHAMMP1 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 1 pseudogene pseudogene Approved 15q13.3 15q13.3 WHDC1P1 WAS protein homology region 2 domain containing 1 pseudogene 1 2005-10-25 2009-02-18 2009-02-18 2014-11-19 100288615 AC009673 NR_036650 +HGNC:32360 WHAMMP2 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 2 pseudogene pseudogene Approved 15q13.1 15q13.1 "WHDC1L2|WHAMML2" "WAS protein homology region 2 domain containing 1-like 2 (pseudogene)|WAS protein homolog associated with actin, golgi membranes and microtubules-like 2 (pseudogene)" 2005-10-25 2011-06-24 2011-06-24 2014-03-20 440253 ENSG00000248334 OTTHUMG00000176340 BC035099 NR_026589 PGOHUM00000247031 +HGNC:27892 WHAMMP3 WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3 pseudogene pseudogene Approved 15q11.2 15q11.2 "WHDC1L1|WHAMML1" "WAS protein homology region 2 domain containing 1-like 1|WAS protein homolog associated with actin, golgi membranes and microtubules-like 1|WAS protein homolog associated with actin, golgi membranes and microtubules-like 1 (pseudogene)" 2005-10-25 2011-06-24 2011-06-24 2015-02-02 339005 ENSG00000276141 OTTHUMG00000188382 BC048987 NR_003521 Q1A5X7 18226259 PGOHUM00000293128 +HGNC:12764 WHCR Wolf-Hirschhorn syndrome chromosome region other region Approved 4p16 04p16 1990-09-10 2014-01-29 7467 +HGNC:16361 WHRN whirlin protein-coding gene gene with protein product Approved 9q32 09q32 "CIP98|USH2D|PDZD7B" DFNB31 deafness, autosomal recessive 31 "PDZ domain containing|USH2 complex " "1220|1244" 2001-08-14 2016-05-17 2016-05-17 2016-10-12 25861 ENSG00000095397 OTTHUMG00000020539 uc004biz.5 AK056190 NM_015404 "CCDS6806|CCDS43870" Q9P202 "12833159|17171570" MGI:2682003 RGD:631330 "CCHMC-BMI & UC Hearing Loss Mutation Database|https://research.cchmc.org/LOVD/home.php?select_db=DFNB31|LRG_1094|http://www.lrg-sequence.org/LRG/LRG_1094" 607928 139217 +HGNC:12766 WHSC1 Wolf-Hirschhorn syndrome candidate 1 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 "MMSET|NSD2" "multiple myeloma SET domain containing protein|nuclear receptor binding SET domain protein 2" "PHD finger proteins|PWWP domain containing" "88|1147" 1998-06-25 2016-03-01 7468 ENSG00000109685 OTTHUMG00000121147 uc003gdz.5 AF083386 NM_133330 "CCDS3356|CCDS33940|CCDS46999" O96028 "9618163|9787135" MGI:1276574 RGD:1307955 WHSC1 602952 120521 +HGNC:12767 WHSC1L1 Wolf-Hirschhorn syndrome candidate 1-like 1 protein-coding gene gene with protein product Approved 8p11.2 08p11.2 "FLJ20353|NSD3|WHISTLE" nuclear receptor binding SET domain protein 3 "PHD finger proteins|PWWP domain containing" "88|1147" 2000-05-02 2016-03-01 54904 ENSG00000147548 OTTHUMG00000165115 uc003xli.4 AF332469 NM_023034 "CCDS6105|CCDS43729" Q9BZ95 "10802047|23269674" MGI:2142581 RGD:1308980 WHSC1L1 607083 +HGNC:14647 WHSC1L2P Wolf-Hirschhorn syndrome candidate 1-like 2, pseudogene pseudogene pseudogene Approved 17q21 17q21 "NSD4P|HsT36289" WHSC1L1P Wolf-Hirschhorn syndrome candidate 1-like 1 pseudogene 2001-04-25 2011-04-15 2014-11-18 100128016 NG_008078 11549311 +HGNC:18081 WIF1 WNT inhibitory factor 1 protein-coding gene gene with protein product Approved 12q14.3 12q14.3 2002-01-29 2016-10-05 11197 ENSG00000156076 OTTHUMG00000168832 uc001ssk.4 AF122922 NM_007191 CCDS8971 Q9Y5W5 10201374 MGI:1344332 RGD:619774 WIF1 605186 +HGNC:12736 WIPF1 WAS/WASL interacting protein family member 1 protein-coding gene gene with protein product Approved 2q31.1 02q31.1 WIP WASPIP "Wiskott-Aldrich syndrome protein interacting protein|WAS/WASL interacting protein family, member 1" 1998-03-02 2006-10-12 2015-11-18 2016-10-12 7456 ENSG00000115935 OTTHUMG00000132334 uc002uja.4 AF031588 NM_003387 CCDS2260 O43516 9405671 MGI:2178801 RGD:620887 LRG_374|http://www.lrg-sequence.org/LRG/LRG_374 WIPF1 602357 292448 +HGNC:30923 WIPF2 WAS/WASL interacting protein family member 2 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 "WICH|WIRE" WAS/WASL interacting protein family, member 2 2006-10-12 2015-11-18 2015-11-18 147179 ENSG00000171475 OTTHUMG00000133331 uc002hug.2 BC025965 NM_133264 CCDS11364 Q8TF74 "12213210|11829459" MGI:1924462 RGD:1561080 WIPF2 609692 +HGNC:22004 WIPF3 WAS/WASL interacting protein family member 3 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 "CR16|FLJ36931" WAS/WASL interacting protein family, member 3 2006-10-12 2015-11-18 2016-10-05 644150 ENSG00000122574 OTTHUMG00000152761 uc022aaz.1 AK094250 XM_017012522 CCDS56472 A6NGB9 MGI:3044681 RGD:708559 WIPF3 612432 +HGNC:25471 WIPI1 WD repeat domain, phosphoinositide interacting 1 protein-coding gene gene with protein product Approved 17q24.2 17q24.2 "FLJ10055|WIPI49|ATG18|ATG18A" "WD repeat domain containing|Autophagy related" "362|1022" 2005-11-15 2016-03-01 55062 ENSG00000070540 OTTHUMG00000179873 uc010dey.4 NM_017983 "CCDS11677|CCDS82193" Q5MNZ9 "15020712|15602573" MGI:1261864 RGD:1307754 WIPI1 609224 +HGNC:32225 WIPI2 WD repeat domain, phosphoinositide interacting 2 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "ATG21|CGI-50|FLJ12979|FLJ14217|FLJ42984|DKFZP434J154|DKFZp686P02188|ATG18B" "WD repeat domain containing|Autophagy related" "362|1022" 2005-11-15 2016-03-01 26100 ENSG00000157954 OTTHUMG00000121179 uc003snx.4 NM_015610 "CCDS5339|CCDS34593|CCDS47531|CCDS47532|CCDS47533" Q9Y4P8 15602573 MGI:1923831 RGD:1359154 WIPI2 609225 +HGNC:12769 WISP1 WNT1 inducible signaling pathway protein 1 protein-coding gene gene with protein product Approved 8q24.22 08q24.22 CCN4 CYR61/CTGF/NOV matricellular proteins 1046 1999-01-22 2014-11-19 8840 ENSG00000104415 OTTHUMG00000164440 uc003yub.4 AF100779 NM_003882 "CCDS6371|CCDS6372|CCDS56555|CCDS56556" O95388 9843955 MGI:1197008 RGD:69431 WISP1 603398 +HGNC:49126 WISP1-OT1 WISP1 overlapping transcript 1 non-coding RNA RNA, long non-coding Approved 8q24.22 08q24.22 WISP1-UT1 "WISP1 3'UTR-associated RNA 1|WISP1 overlapping transcript 1 (non-protein coding)" 2013-09-02 2013-10-31 2014-06-02 2014-06-02 106144543 ENSG00000270132 OTTHUMG00000184142 BQ009791 +HGNC:12770 WISP2 WNT1 inducible signaling pathway protein 2 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "CT58|CTGF-L|CCN5" CYR61/CTGF/NOV matricellular proteins 1046 1999-01-22 2014-11-19 8839 ENSG00000064205 OTTHUMG00000033071 uc061xfx.1 AF100780 NM_003881 "CCDS13336|CCDS82619" O76076 9843955 MGI:1328326 RGD:621867 WISP2 603399 +HGNC:12771 WISP3 WNT1 inducible signaling pathway protein 3 protein-coding gene gene with protein product Approved 6q21 06q21 CCN6 CYR61/CTGF/NOV matricellular proteins 1046 1999-01-22 2015-08-26 8838 ENSG00000112761 OTTHUMG00000185101 uc003pvo.4 AF100781 NM_003880 "CCDS5097|CCDS5098" O95389 9843955 MGI:2685581 RGD:1564120 WISP3 603400 120528 +HGNC:30917 WIZ widely interspaced zinc finger motifs protein-coding gene gene with protein product Approved 19p13.12 19p13.12 ZNF803 WIZ zinc finger Zinc fingers C2H2-type 28 2006-10-17 2007-01-18 2014-11-18 58525 ENSG00000011451 OTTHUMG00000182448 uc002nbb.5 AK091183 NM_021241 "CCDS42516|CCDS82308" O95785 "9795207|12226707" MGI:1332638 RGD:1307771 WIZ +HGNC:51696 WIZP1 widely interspaced zinc finger motifs pseudogene 1 pseudogene pseudogene Approved 11p14.3 11p14.3 2015-05-07 2015-05-07 645598 ENSG00000255293 OTTHUMG00000166083 NG_021812 PGOHUM00000290845 +HGNC:30238 WLS wntless Wnt ligand secretion mediator protein-coding gene gene with protein product Approved 1p31.3 01p31.3 "FLJ23091|MRP|wls|EVI|mig-14" wntless homolog "C1orf139|GPR177" "chromosome 1 open reading frame 139|G protein-coupled receptor 177|wntless homolog (Drosophila)" 2005-07-08 2010-03-02 2013-10-03 2016-10-05 79971 ENSG00000116729 OTTHUMG00000009153 uc001def.3 BX538320 NM_024911 "CCDS642|CCDS30750|CCDS53331" Q5T9L3 12761501 MGI:1915401 RGD:735139 WLS 611514 +HGNC:14540 WNK1 WNK lysine deficient protein kinase 1 protein-coding gene gene with protein product Approved 12p13.33 12p13.33 "HSAN2|PPP1R167" protein phosphatase 1, regulatory subunit 167 "PRKWNK1|HSN2" "protein kinase, lysine deficient 1|hereditary sensory neuropathy, type II" "Protein phosphatase 1 regulatory subunits|Minor histocompatibility antigens" "694|870" 2001-02-06 2005-01-21 2005-01-19 2016-10-12 65125 ENSG00000060237 OTTHUMG00000090321 uc001qio.4 AJ296290 NM_018979 "CCDS8506|CCDS53731|CCDS73419" Q9H4A3 MGI:2442092 RGD:621141 "Inherited Peripheral Neuropathies Mutation Database|http://www.molgen.ua.ac.be/CMTMutations/|LRG_247|http://www.lrg-sequence.org/LRG/LRG_247" WNK1 605232 120531 objectId:2280 +HGNC:14542 WNK2 WNK lysine deficient protein kinase 2 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "NY-CO-43|KIAA1760" "SDCCAG43|PRKWNK2" serologically defined colon cancer antigen 43 2001-02-07 2005-01-22 2003-06-23 2016-10-05 65268 ENSG00000165238 OTTHUMG00000020247 uc004ati.3 AJ242724 NM_006648 CCDS75858 Q9Y3S1 "9610721|11571656" MGI:1922857 RGD:1307284 WNK2 606249 objectId:2281 +HGNC:14543 WNK3 WNK lysine deficient protein kinase 3 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 PRKWNK3 protein kinase, lysine deficient 3 2001-02-07 2005-01-22 2005-01-19 2014-11-19 65267 ENSG00000196632 OTTHUMG00000021626 uc004dtc.3 AJ409088 NM_020922 "CCDS14357|CCDS35302" Q9BYP7 MGI:2652875 RGD:1563131 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=WNK3 WNK3 300358 objectId:2282 +HGNC:14544 WNK4 WNK lysine deficient protein kinase 4 protein-coding gene gene with protein product Approved 17q21.2 17q21.2 PRKWNK4 protein kinase, lysine deficient 4 2001-02-07 2005-01-19 2005-01-19 2015-07-22 65266 ENSG00000126562 OTTHUMG00000180650 uc002ibj.4 AJ309861 NM_001321299 CCDS11439 Q96J92 MGI:1917097 RGD:631401 WNK4 601844 120534 objectId:2283 +HGNC:12774 WNT1 Wnt family member 1 protein-coding gene gene with protein product Approved 12q13.12 12q13.12 INT1 wingless-type MMTV integration site family, member 1 "Wnt family|Endogenous ligands" "360|542" 2001-06-22 2016-03-18 2016-03-18 7471 ENSG00000125084 OTTHUMG00000170403 uc001rsu.4 X03072 NM_005430 CCDS8776 P04628 "2998762|3281802" MGI:98953 RGD:1597195 WNT1 164820 331934 +HGNC:12780 WNT2 Wnt family member 2 protein-coding gene gene with protein product Approved 7q31.2 07q31.2 IRP secreted growth factor INT1L1 wingless-type MMTV integration site family member 2 "Wnt family|Endogenous ligands" "360|542" 1988-08-05 2016-03-18 2016-10-05 7472 ENSG00000105989 OTTHUMG00000023428 uc003viz.4 X07876 NM_003391 CCDS5771 P09544 2971536 MGI:98954 RGD:621346 WNT2 147870 +HGNC:12781 WNT2B Wnt family member 2B protein-coding gene gene with protein product Approved 1p13.2 01p13.2 XWNT2 "XWNT2, Xenopus, homolog of|wingless-type MMTV integration site family, member 13" WNT13 wingless-type MMTV integration site family, member 2B Wnt family 360 1997-09-05 2016-03-18 2016-10-05 7482 ENSG00000134245 OTTHUMG00000011157 uc001ecb.4 AB045116 NM_004185 "CCDS847|CCDS846|CCDS76188" Q93097 "8761309|10944466" MGI:1261834 RGD:69346 WNT2B 601968 +HGNC:12782 WNT3 Wnt family member 3 protein-coding gene gene with protein product Approved 17q21.31-q21.32 17q21.31-q21.32 "MGC131950|MGC138321|MGC138323" WNT-3 proto-oncogene protein INT4 wingless-type MMTV integration site family, member 3 "Wnt family|Endogenous ligands" "360|542" 1989-05-30 2016-03-18 2016-10-11 7473 ENSG00000108379 OTTHUMG00000178076 uc002ikv.3 AY009397 NM_030753 CCDS11505 P56703 8244403 MGI:98955 RGD:3972 WNT3 165330 120537 +HGNC:15983 WNT3A Wnt family member 3A protein-coding gene gene with protein product Approved 1q42.13 01q42.13 wingless-type MMTV integration site family, member 3A "Wnt family|Endogenous ligands" "360|542" 2001-06-29 2016-03-18 2016-10-05 89780 ENSG00000154342 OTTHUMG00000037593 uc001hrq.3 AB060284 NM_033131 CCDS1564 P56704 11414706 MGI:98956 RGD:1308057 WNT3A 606359 310103 +HGNC:12783 WNT4 Wnt family member 4 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 WNT-4 wingless-type MMTV integration site family, member 4 "Wnt family|Endogenous ligands" "360|542" 2000-07-31 2016-03-18 2016-10-05 54361 ENSG00000162552 OTTHUMG00000002894 uc001bfs.5 AL031281 XM_011541597 CCDS223 P56705 8168088 MGI:98957 RGD:621348 WNT4 603490 120540 +HGNC:12784 WNT5A Wnt family member 5A protein-coding gene gene with protein product Approved 3p14.3 03p14.3 hWNT5A WNT-5A protein wingless-type MMTV integration site family, member 5A "Wnt family|Endogenous ligands" "360|542" 1993-07-06 2016-03-18 2016-10-05 7474 ENSG00000114251 OTTHUMG00000158361 uc062ktw.1 L20861 NM_003392 "CCDS46850|CCDS58835" P41221 8288227 MGI:98958 RGD:69250 WNT5A 164975 231387 +HGNC:40616 WNT5A-AS1 WNT5A antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p14.3 03p14.3 WNT5A antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874008 ENSG00000244586 OTTHUMG00000158382 uc062kub.1 +HGNC:16265 WNT5B Wnt family member 5B protein-coding gene gene with protein product Approved 12p13.33 12p13.33 wingless-type MMTV integration site family, member 5B Wnt family 360 2001-07-18 2016-03-18 2016-10-05 81029 ENSG00000111186 OTTHUMG00000090375 uc009zdq.4 AB060966 NM_030775 CCDS8510 Q9H1J7 11445850 MGI:98959 RGD:628850 WNT5B 606361 +HGNC:12785 WNT6 Wnt family member 6 protein-coding gene gene with protein product Approved 2q35 02q35 wingless-type MMTV integration site family, member 6 Wnt family 360 1998-07-10 2016-03-18 2016-03-18 7475 ENSG00000115596 OTTHUMG00000133082 uc002vjc.2 AF079522 NM_006522 CCDS2425 Q9Y6F9 "10343101|11350055" MGI:98960 RGD:1304559 WNT6 604663 +HGNC:12786 WNT7A Wnt family member 7A protein-coding gene gene with protein product Approved 3p25.1 03p25.1 proto-oncogene Wnt7a protein wingless-type MMTV integration site family, member 7A Wnt family 360 1996-03-12 2016-03-18 2016-10-05 7476 ENSG00000154764 OTTHUMG00000129803 uc003bye.2 D83175 NM_004625 CCDS2616 O00755 "8893824|9161407" MGI:98961 RGD:69079 WNT7A 601570 120543 +HGNC:12787 WNT7B Wnt family member 7B protein-coding gene gene with protein product Approved 22q13.31 22q13.31 wingless-type MMTV integration site family, member 7B "Wnt family|Endogenous ligands" "360|542" 1997-04-21 2016-03-18 2016-10-05 7477 ENSG00000188064 OTTHUMG00000154636 uc003bgo.4 AF416743 NM_058238 CCDS33667 P56706 "8168088|9284940|11562755" MGI:98962 RGD:1311441 WNT7B 601967 +HGNC:12788 WNT8A Wnt family member 8A protein-coding gene gene with protein product Approved 5q31.2 05q31.2 WNT8D wingless-type MMTV integration site family, member 8A Wnt family 360 1995-11-01 2016-03-18 2016-10-05 7478 ENSG00000061492 OTTHUMG00000129196 uc003lcd.1 AB057725 NM_058244 "CCDS43368|CCDS75311" Q9H1J5 11408932 MGI:107924 RGD:1306312 WNT8A 606360 +HGNC:12789 WNT8B Wnt family member 8B protein-coding gene gene with protein product Approved 10q24.31 10q24.31 wingless-type MMTV integration site family, member 8B Wnt family 360 1995-11-01 2016-03-18 2016-10-05 7479 ENSG00000075290 OTTHUMG00000018912 uc001krb.4 X91940 NM_003393 CCDS7494 Q93098 8661156 MGI:109485 RGD:1307644 WNT8B 601396 +HGNC:12778 WNT9A Wnt family member 9A protein-coding gene gene with protein product Approved 1q42.13 01q42.13 WNT14 "wingless-type MMTV integration site family, member 14|wingless-type MMTV integration site family, member 9A" Wnt family 360 1997-09-12 2003-03-14 2016-03-18 2016-10-05 7483 ENSG00000143816 OTTHUMG00000037592 uc001hri.3 AB060283 NM_003395 CCDS31045 O14904 9441749 MGI:2446084 RGD:1305018 WNT9A 602863 +HGNC:12779 WNT9B Wnt family member 9B protein-coding gene gene with protein product Approved 17q21.32 17q21.32 WNT14B WNT15 "wingless-type MMTV integration site family, member 15|wingless-type MMTV integration site family, member 9B" Wnt family 360 1997-09-12 2003-03-14 2016-03-18 2016-03-18 7484 ENSG00000158955 OTTHUMG00000178077 uc002ikw.2 AF028703 NM_003396 "CCDS11506|CCDS82147" O14905 "9441749|11713592" MGI:1197020 RGD:1309574 WNT9B 602864 +HGNC:13829 WNT10A Wnt family member 10A protein-coding gene gene with protein product Approved 2q35 02q35 wingless-type MMTV integration site family, member 10A Wnt family 360 2001-07-13 2016-03-18 2016-03-18 80326 ENSG00000135925 OTTHUMG00000133085 uc002vjd.2 AB059569 NM_025216 CCDS2426 Q9GZT5 "11350055|17847007" MGI:108071 RGD:1307015 WNT10A 606268 123345 +HGNC:12775 WNT10B Wnt family member 10B protein-coding gene gene with protein product Approved 12q13.12 12q13.12 "WNT-12|SHFM6" wingless-type MMTV integration site family, member 10B Wnt family 360 1997-09-05 2016-03-18 2016-10-05 7480 ENSG00000169884 OTTHUMG00000150734 uc001rss.4 X97057 NM_003394 CCDS8775 O00744 "9121776|9284937|18515319" MGI:108061 RGD:1304988 WNT10B 601906 183933 +HGNC:12776 WNT11 Wnt family member 11 protein-coding gene gene with protein product Approved 11q13.5 11q13.5 wingless-type MMTV integration site family, member 11 Wnt family 360 1998-08-06 2016-03-18 2016-03-18 7481 ENSG00000085741 OTTHUMG00000165264 uc001oxe.4 Y12692 NM_004626 CCDS8242 O96014 9757009 MGI:101948 RGD:621463 WNT11 603699 +HGNC:16267 WNT16 Wnt family member 16 protein-coding gene gene with protein product Approved 7q31.31 07q31.31 wingless-type MMTV integration site family, member 16 Wnt family 360 2001-07-20 2016-03-18 2016-10-05 51384 ENSG00000002745 OTTHUMG00000156963 uc003vjw.4 AF152584 NM_057168 "CCDS5780|CCDS5781" Q9UBV4 10500199 MGI:2136018 RGD:1562253 WNT16 606267 +HGNC:25522 WRAP53 WD repeat containing antisense to TP53 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "FLJ10385|TCAB1" "telomerase cajal body protein 1|WD-encoding RNA antisense to p53" WDR79 "WD repeat domain 79|WD repeat containing, antisense to TP53" WD repeat domain containing 362 2005-08-12 2009-02-16 2016-04-25 2016-10-12 55135 ENSG00000141499 OTTHUMG00000134323 uc010vuh.2 "AK001247|DQ431240" NM_018081 CCDS11119 Q9BUR4 "19179534|19250907|19571673|19342896|20494116|21441950" MGI:2384933 RGD:1359624 LRG_375|http://www.lrg-sequence.org/LRG/LRG_375 WRAP53 612661 266162 +HGNC:12759 WRAP73 WD repeat containing, antisense to TP73 protein-coding gene gene with protein product Approved 1p36.32 01p36.32 WDR8 WD repeat domain 8 WD repeat domain containing 362 2000-03-15 2011-04-13 2011-04-13 2016-10-05 49856 ENSG00000116213 OTTHUMG00000000612 uc001ako.4 "AB034912|EF494669" XM_017001387 CCDS48 Q9P2S5 MGI:1891749 RGD:1359137 WRAP73 606040 +HGNC:12790 WRB tryptophan rich basic protein protein-coding gene gene with protein product Approved 21q22.2 21q22.2 "CHD5|GET1" 1997-07-22 2016-10-12 7485 ENSG00000182093 OTTHUMG00000066250 uc002yxs.4 NM_004627 "CCDS13664|CCDS54485" O00258 "9544840|21444755" MGI:2136882 RGD:735104 LRG_1060|http://www.lrg-sequence.org/LRG/LRG_1060 WRB 602915 +HGNC:44010 WRBP1 tryptophan rich basic protein pseudogene 1 pseudogene pseudogene Approved 4q25 04q25 2012-05-28 2012-05-28 256085 ENSG00000248633 OTTHUMG00000161560 NG_006948 PGOHUM00000250729 +HGNC:12791 WRN Werner syndrome RecQ like helicase protein-coding gene gene with protein product Approved 8p12 08p12 "RECQL2|RECQ3" Werner syndrome "Exonucleases|RecQ like helicases" "544|1049" 1991-08-21 2016-02-05 2016-10-12 7486 ENSG00000165392 OTTHUMG00000163894 uc003xio.5 XM_011544639 CCDS6082 Q14191 9288107 MGI:109635 RGD:1564788 "Database of WS-associated WRN mutations|http://www.pathology.washington.edu/werner/ws_wrn.html|LRG_524|http://www.lrg-sequence.org/LRG/LRG_524" WRN 604611 120545 +HGNC:20876 WRNIP1 Werner helicase interacting protein 1 protein-coding gene gene with protein product Approved 6p25.2 06p25.2 "WHIP|FLJ22526|bA420G6.2" AAA ATPases 413 2003-06-13 2014-11-19 56897 ENSG00000124535 OTTHUMG00000014126 uc003mtz.4 AB056152 NM_130395 "CCDS4475|CCDS4476" Q96S55 11301316 MGI:1926153 RGD:628836 WRNIP1 608196 +HGNC:12794 WS2B Waardenburg syndrome, type 2B phenotype phenotype only Approved 1p21-p13.3 01p21-p13.3 1994-11-20 2008-05-14 7488 7951321 600193 +HGNC:19221 WSB1 WD repeat and SOCS box containing 1 protein-coding gene gene with protein product Approved 17q11.1 17q11.1 "DKFZp564A122|DKFZp564B0482|SWIP1" WD repeat and SOCS box-containing 1 WD repeat domain containing 362 2004-02-20 2011-01-25 2016-10-05 26118 ENSG00000109046 OTTHUMG00000132293 uc002gzd.2 AF069313 NM_015626 "CCDS11220|CCDS11221" Q9Y6I7 "10354473|12076535" MGI:1926139 RGD:1307835 WSB1 610091 +HGNC:19222 WSB2 WD repeat and SOCS box containing 2 protein-coding gene gene with protein product Approved 12q24.23 12q24.23 "SBA2|MGC10210" WD repeat and SOCS box-containing 2 WD repeat domain containing 362 2004-02-20 2011-01-25 2014-11-18 55884 ENSG00000176871 OTTHUMG00000168885 uc001twr.4 AF038187 NM_018639 "CCDS9186|CCDS61251|CCDS61252" Q9NYS7 12076535 MGI:2144041 RGD:1359599 WSB2 +HGNC:29060 WSCD1 WSC domain containing 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 KIAA0523 2007-03-27 2015-07-22 23302 ENSG00000179314 OTTHUMG00000177794 uc010cli.4 NM_015253 CCDS32538 Q658N2 MGI:2448493 RGD:1308212 WSCD1 +HGNC:29117 WSCD2 WSC domain containing 2 protein-coding gene gene with protein product Approved 12q23.3 12q23.3 KIAA0789 2007-03-27 2015-07-22 9671 ENSG00000075035 OTTHUMG00000169579 uc001tms.4 NM_014653 CCDS41828 Q2TBF2 MGI:2445030 RGD:1589744 WSCD2 +HGNC:12795 WSN Waisman syndrome phenotype phenotype only Approved Xq27.3-qter Xq27.3-qter 1990-10-23 1991-07-03 7489 +HGNC:51639 WSPAR WNT signaling pathway activating non-coding RNA non-coding RNA RNA, long non-coding Approved 5q31.1 05q31.1 "TCONS_00009511-XLOC_004555|lncTCF7" 2015-04-09 2015-04-09 105664404 ENSG00000249073 OTTHUMG00000163048 BE270324 NR_131252 25842979 616333 +HGNC:12796 WT1 Wilms tumor 1 protein-coding gene gene with protein product Approved 11p13 11p13 "WAGR|WIT-2|AWT1|NPHS4" GUD Zinc fingers C2H2-type 28 1989-04-13 2016-10-12 7490 ENSG00000184937 OTTHUMG00000039556 uc001mtn.4 NM_000378 "CCDS7878|CCDS44561|CCDS44562|CCDS55750|CCDS55751" P19544 14681303 MGI:98968 RGD:3974 LRG_525|http://www.lrg-sequence.org/LRG/LRG_525 WT1 607102 120549 +HGNC:18135 WT1-AS WT1 antisense RNA non-coding RNA RNA, long non-coding Approved 11p13 11p13 "WIT-1|WT1AS|WT1-AS1" Wilms tumor associated protein WIT1 "Wilms tumor upstream neighbor 1|WT1 antisense RNA (non-protein coding)" Long non-coding RNAs 788 2005-10-28 2012-01-25 2012-08-15 2014-11-19 51352 ENSG00000183242 OTTHUMG00000039557 uc058adn.1 BC002734 NR_023920 Q06250 "2173145|8406502|17210670" WT1-AS 607899 wt1-as +HGNC:12797 WT2 Wilms tumor 2 phenotype phenotype only Approved 11p15.5 11p15.5 "MTACR1|ADCR" 1989-05-24 2011-03-17 7491 +HGNC:16846 WTAP Wilms tumor 1 associated protein protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "KIAA0105|MGC3925|Mum2" 2003-05-19 2016-10-05 9589 ENSG00000146457 OTTHUMG00000015933 uc003qsl.6 AJ276706 NM_152857 "CCDS5266|CCDS5267|CCDS75542" Q15007 "7788527|11001926|24407421" MGI:1926395 RGD:1563824 WTAP 605442 +HGNC:44115 WTAPP1 Wilms tumor 1 associated protein pseudogene 1 pseudogene pseudogene Approved 11q22.2 11q22.2 2012-06-23 2012-06-29 100288077 ENSG00000255282 OTTHUMG00000165847 NR_038390 +HGNC:20964 WTIP Wilms tumor 1 interacting protein protein-coding gene gene with protein product Approved 19q13.11 19q13.11 WT1-interacting protein LIM domain containing 1218 2005-02-11 2014-11-19 126374 ENSG00000142279 OTTHUMG00000182099 uc002nvm.4 AK130059 XM_059037 CCDS59375 A6NIX2 14736876 MGI:2141920 RGD:1306411 WTIP 614790 +HGNC:29435 WWC1 WW and C2 domain containing 1 protein-coding gene gene with protein product Approved 5q34 05q34 "KIBRA|KIAA0869|PPP1R168" protein phosphatase 1, regulatory subunit 168 WW, C2 and coiled-coil domain containing 1 "Protein phosphatase 1 regulatory subunits|C2 and WW domain containing" "694|838" 2006-02-22 2006-11-09 2014-11-19 23286 ENSG00000113645 OTTHUMG00000130408 uc003lzu.4 AF506799 NM_015238 "CCDS4366|CCDS54945" Q8IX03 "10048485|12559952" MGI:2388637 RGD:1308329 WWC1 610533 +HGNC:24148 WWC2 WW and C2 domain containing 2 protein-coding gene gene with protein product Approved 4q35.1 04q35.1 "BOMB|FLJ22029" WW, C2 and coiled-coil domain containing 2 C2 and WW domain containing 838 2006-02-22 2006-11-09 2014-11-19 80014 ENSG00000151718 OTTHUMG00000150685 uc010irx.4 BC017957 NM_024949 CCDS34109 Q6AWC2 12477932 MGI:1261872 RGD:1559427 WWC2 +HGNC:41041 WWC2-AS1 WWC2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 4q35.1 04q35.1 WWC2 antisense RNA 1 (non-protein coding) 2012-03-02 2012-08-15 2014-11-19 101928734 ENSG00000251128 OTTHUMG00000160679 uc003ivm.3 NR_126473 +HGNC:26390 WWC2-AS2 WWC2 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 4q35.1 04q35.1 FLJ30277 C4orf38 "chromosome 4 open reading frame 38|WWC2 antisense RNA 2 (non-protein coding)" 2007-07-10 2012-03-02 2012-08-15 2014-11-19 152641 ENSG00000251359 OTTHUMG00000160677 uc003ivj.2 AK054839 NR_024008 Q96NR7 +HGNC:29237 WWC3 WWC family member 3 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "KIAA1280|BM042" 2006-02-22 2016-10-05 55841 ENSG00000047644 OTTHUMG00000021123 uc064xyg.1 AK091936 NM_015691 CCDS14136 Q9ULE0 10574462 RGD:1560666 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=WWC3 WWC3 +HGNC:41236 WWC3-AS1 WWC3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.2 Xp22.2 WWC3 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873953 ENSG00000225076 OTTHUMG00000021122 uc064xyi.1 +HGNC:12799 WWOX WW domain containing oxidoreductase protein-coding gene gene with protein product Approved 16q23.1-q23.2 16q23.1-q23.2 "FOR|WOX1|SDR41C1" short chain dehydrogenase/reductase family 41C, member 1 WW domain-containing oxidoreductase Short chain dehydrogenase/reductase superfamily 743 2000-07-31 2002-01-14 2016-10-11 51741 ENSG00000186153 OTTHUMG00000176851 uc002ffk.4 AF187015 XM_011523101 "CCDS42196|CCDS42197" Q9NZC7 "10786676|10861292|19027726" MGI:1931237 RGD:1309927 WWOX 605131 120554 1.1.1.- +HGNC:17004 WWP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding gene gene with protein product Approved 8q21.3 08q21.3 "AIP5|DKFZP434D2111" C2 and WW domain containing 838 2004-07-07 2014-11-19 11059 ENSG00000123124 OTTHUMG00000163690 uc003ydt.4 AY043361 NM_007013 CCDS6242 Q9H0M0 "9169421|9647693" MGI:1861728 RGD:1311734 WWP1 602307 +HGNC:48944 WWP1P1 WW domain containing E3 ubiquitin protein ligase 1 pseudogene 1 pseudogene pseudogene Approved 3q12.1 03q12.1 2013-07-22 2016-08-16 339843 ENSG00000244153 OTTHUMG00000159795 NG_022259 PGOHUM00000299513 +HGNC:16804 WWP2 WW domain containing E3 ubiquitin protein ligase 2 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 AIP2 C2 and WW domain containing 838 2004-07-07 2014-11-18 11060 ENSG00000198373 OTTHUMG00000137573 uc002exv.3 BC013645 NM_007014 "CCDS10885|CCDS58475|CCDS58476|CCDS58477" O00308 "9169421|12167593" MGI:1914144 RGD:1310091 WWP2 602308 +HGNC:24042 WWTR1 WW domain containing transcription regulator 1 protein-coding gene gene with protein product Approved 3q25.1 03q25.1 "TAZ|DKFZp586I1419" 2004-12-03 2016-10-05 25937 ENSG00000018408 OTTHUMG00000159614 uc003exh.4 AK022036 NM_015472 CCDS3144 Q9GZV5 "11118213|15096513" MGI:1917649 RGD:1559609 WWTR1 607392 431102 +HGNC:41035 WWTR1-AS1 WWTR1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 WWTR1 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100128025 ENSG00000241313 OTTHUMG00000159618 uc003exi.3 NR_040250 +HGNC:41469 WWTR1-IT1 WWTR1 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 3q25.1 03q25.1 WWTR1 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 106478977 ENSG00000241985 OTTHUMG00000159620 uc062oxk.1 +HGNC:14089 XAB2 XPA binding protein 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "HCNP|HCRN|SYF1|NTC90" "SYF1 homolog, RNA splicing factor (S. cerevisiae)|SYF1 pre-mRNA-splicing factor" Nucleotide excision repair 1269 2003-10-14 2014-11-18 56949 ENSG00000076924 OTTHUMG00000182404 uc002mgx.4 AB026111 NM_020196 CCDS32892 Q9HCS7 10944529 MGI:1914689 RGD:621217 XAB2 610850 +HGNC:45056 XACT X active specific transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved Xq23 Xq23 X active coating transcript 2013-02-04 2016-03-24 105463123 ENSG00000241743 OTTHUMG00000022220 uc065atz.1 BQ010753 NR_131204 "23334669|25921272" 300901 +HGNC:30932 XAF1 XIAP associated factor 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "BIRC4BP|XIAPAF1|HSXIAPAF1" 2008-03-04 2014-11-19 54739 ENSG00000132530 OTTHUMG00000177908 uc002gdn.4 X99699 NM_017523 "CCDS11080|CCDS11081" Q6GPH4 "12029096|11175744" MGI:3505735 RGD:1585988 XAF1 606717 +HGNC:4111 XAGE1A X antigen family member 1A protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "XAGE-1|CT12.1a" cancer/testis antigen family 12, member 1a "GAGED2|XAGE1" "G antigen, family D, 2|X antigen family, member 1|X antigen family, member 1A" 1999-04-15 2008-05-19 2015-11-18 2015-11-18 ENSG00000204379 OTTHUMG00000021557 uc004dqf.4 NM_001097591 Q9HD64 10197611 XAGE1A +HGNC:25400 XAGE1B X antigen family member 1B protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 CT12.1b cancer/testis antigen family 12, member 1b X antigen family, member 1B 2006-06-30 2015-11-18 2015-11-18 653220 ENSG00000204382 OTTHUMG00000163577 uc064zig.1 XM_017029748 "CCDS75982|CCDS75983" Q9HD64 XAGE1B "300742|300743" +HGNC:30679 XAGE1C X antigen family member 1C protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 CT12.1c cancer/testis antigen family 12, member 1c X antigen family, member 1C 2006-06-30 2015-11-18 2015-11-18 653048 Q9HD64 XAGE1C +HGNC:21508 XAGE1D X antigen family member 1D protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 CT12.1d cancer/testis antigen family 12, member 1d X antigen family, member 1D 2006-06-30 2015-11-18 2015-11-18 9503 Q9HD64 XAGE1D +HGNC:18372 XAGE1E X antigen family member 1E protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 X antigen family, member 1E 2006-06-30 2015-11-18 2016-04-25 653067 XM_017029746 "CCDS48126|CCDS48128" Q9HD64 XAGE1E "300289|300744|300745" +HGNC:4112 XAGE2 X antigen family member 2 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "XAGE-2|CT12.2" cancer/testis antigen family 12, member 2 "GAGED3|XAGE2B" "G antigen, family D, 3|X antigen family, member 2B|X antigen family, member 2" 1999-04-15 2005-01-27 2015-11-18 2015-11-18 9502 ENSG00000155622 OTTHUMG00000021549 uc004dqe.4 NM_130777 CCDS59525 Q96GT9 10197611 XAGE2 300416 +HGNC:14618 XAGE3 X antigen family member 3 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "XAGE-3|pp9012|CT12.3a|CT12.3b" "cancer/testis antigen family 12, member 3a|cancer/testis antigen family 12, member 3b" "PLAC6|GAGED4" "placenta-specific 6; G antigen, family D, 4|X antigen family, member 3" 2002-04-03 2005-01-27 2015-11-18 2015-11-18 170626 ENSG00000171402 OTTHUMG00000021587 uc004drf.4 BG354572 NM_133179 CCDS14347 Q8WTP9 XAGE3 300740 +HGNC:30930 XAGE5 X antigen family member 5 protein-coding gene gene with protein product Approved Xp11.22 Xp11.22 "XAGE-5|CT12.5" cancer/testis antigen family 12, member 5 GAGED5 "G antigen, family D, 5|X antigen family, member 5" 2004-08-16 2005-01-27 2015-11-18 2016-10-05 170627 ENSG00000171405 OTTHUMG00000021589 uc064zio.1 BC069129 NM_130775 CCDS14346 Q8WWM1 12477932 XAGE5 +HGNC:12801 XBP1 X-box binding protein 1 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 XBP2 Basic leucine zipper proteins 506 1992-02-13 2015-08-26 7494 ENSG00000100219 OTTHUMG00000151094 uc062cvg.1 M31627 NM_005080 CCDS13847 P17861 "1718857|2196176" MGI:98970 RGD:1303073 XBP1 194355 +HGNC:12802 XBP1P1 X-box binding protein 1 pseudogene 1 pseudogene pseudogene Approved 5q22.2 05q22.2 "XBP1|XBPP1" X-box binding protein pseudogene 1 1991-07-11 2009-12-02 2009-12-02 2014-11-19 7495 ENSG00000249947 OTTHUMG00000162854 NG_003037 1718857 PGOHUM00000235731 +HGNC:12803 XBX1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-11-13 +HGNC:12804 XCE X chromosome controlling element other unknown Approved Xq13 Xq13 1988-04-26 2013-04-03 7497 "5480753|8118102" 300074 +HGNC:10645 XCL1 X-C motif chemokine ligand 1 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 "LPTN|ATAC|SCM-1a|SCM-1" lymphotactin "LTN|SCYC1" "small inducible cytokine subfamily C, member 1 (lymphotactin)|chemokine (C motif) ligand 1" "Chemokine ligands|Endogenous ligands" "483|542" 1996-03-19 2002-08-23 2016-03-02 2016-03-02 6375 ENSG00000143184 OTTHUMG00000034548 uc001gfo.2 D43768 NM_002995 CCDS1274 P47992 "7602097|7875320" MGI:104593 RGD:620452 XCL1 600250 +HGNC:10646 XCL2 X-C motif chemokine ligand 2 protein-coding gene gene with protein product Approved 1q24.2 01q24.2 SCM-1b SCYC2 "small inducible cytokine subfamily C, member 2|chemokine (C motif) ligand 2" "Chemokine ligands|Endogenous ligands" "483|542" 1997-02-19 2002-08-23 2016-03-02 2016-03-02 6846 ENSG00000143185 OTTHUMG00000034549 uc001gfn.4 BC070309 NM_003175 CCDS1273 Q9UBD3 7875320 MGI:104593 XCL2 604828 +HGNC:1625 XCR1 X-C motif chemokine receptor 1 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "GPR5|CCXCR1" "chemokine (C motif) XC receptor 1|chemokine (C motif) receptor 1" X-C motif chemokine receptors 1092 1994-07-25 2002-08-23 2016-03-14 2016-10-05 2829 ENSG00000173578 OTTHUMG00000133449 uc003cpd.2 XM_017006196 CCDS2736 P46094 "7832990|10400311" MGI:1346338 RGD:1311480 XCR1 600552 objectId:75 +HGNC:12805 XDH xanthine dehydrogenase protein-coding gene gene with protein product Approved 2p23.1 02p23.1 "XOR|XO" xanthene dehydrogenase 1994-04-08 2003-03-20 2014-11-19 7498 ENSG00000158125 OTTHUMG00000099385 uc002rnv.2 D11456 NM_000379 CCDS1775 P47989 8224915 MGI:98973 RGD:62043 XDH 607633 120558 objectId:2646 1.17.1.4 +HGNC:12806 XG Xg blood group protein-coding gene gene with protein product Approved Xp22.33 Xp22.33 PBDX Xg blood group (pseudoautosomal boundary-divided on the X chromosome) "Blood group antigens|Pseudoautosomal region 1" "454|715" 2001-06-22 2006-01-12 2016-10-12 7499 ENSG00000124343 OTTHUMG00000021075 uc011mhg.4 AF380356 NM_175569 "CCDS14120|CCDS48073" P55808 8054981 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=XG|LRG_805|http://www.lrg-sequence.org/LRG/LRG_805" XG 300879 +HGNC:12808 XGR XG and CD99 regulator phenotype phenotype only Approved Xp22.32 and Yp11 Xp22.32 and Yp11 YG expression of XG and MIC2 on erythrocytes 2001-06-22 2006-01-12 2012-10-02 7501 "314705|489500" +HGNC:12807 XGY1 Xg pseudogene, Y-linked 1 pseudogene pseudogene Approved Yq11.221 Yq11.221 XGPY1 XGPY "Xg pseudogene (Y-linked)|Xg pseudogene, Y-linked" 1995-12-20 2014-05-07 2014-05-07 2016-10-05 7500 ENSG00000227447 OTTHUMG00000036465 NG_005784 7633446 PGOHUM00000233746 +HGNC:34022 XGY2 Xg pseudogene, Y-linked 2 pseudogene pseudogene Approved Yp11.31 Yp11.31 XGPY2 2008-03-14 2014-05-07 2014-11-19 100132596 OTTHUMG00000036085 Z48510 NR_003254 +HGNC:592 XIAP X-linked inhibitor of apoptosis protein-coding gene gene with protein product Approved Xq25 Xq25 hILP "API3|BIRC4" "baculoviral IAP repeat-containing 4|X-linked inhibitor of apoptosis, E3 ubiquitin protein ligase" Baculoviral IAP repeat containing 419 1998-06-10 2008-03-04 2015-12-11 2016-10-12 331 ENSG00000101966 OTTHUMG00000022336 uc010nqu.4 U45880 NM_001167 CCDS14606 P98170 "8552191|8654366|15749826" MGI:107572 RGD:620692 "BIRC4base: Mutation registry for X-linked lymphoproliferative syndrome|http://structure.bmc.lu.se/idbase/BIRC4base/|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=XIAP|LRG_19|http://www.lrg-sequence.org/LRG/LRG_19" XIAP 300079 138732 objectId:2790 +HGNC:40078 XIAP-AS1 XIAP antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xq25 Xq25 XIAP antisense RNA 1 (non-protein coding) 2011-07-28 2012-08-15 2014-11-19 106480735 ENSG00000237331 OTTHUMG00000022339 uc065azu.1 +HGNC:52375 XIAPP1 X-linked inhibitor of apoptosis pseudogene 1 pseudogene pseudogene Approved 10q25.1 10q25.1 2016-08-19 2016-08-19 100996851 ENSG00000270294 OTTHUMG00000184641 PGOHUM00000290278 +HGNC:52376 XIAPP2 X-linked inhibitor of apoptosis pseudogene 2 pseudogene pseudogene Approved 11q14.2 11q14.2 2016-08-19 2016-08-19 100420509 ENSG00000254843 OTTHUMG00000167235 NG_024396 PGOHUM00000290621 +HGNC:52377 XIAPP3 X-linked inhibitor of apoptosis pseudogene 3 pseudogene pseudogene Approved 2q14.1 02q14.1 2016-08-19 2016-08-19 100128413 ENSG00000180152 OTTHUMG00000153319 NG_021579 PGOHUM00000298646 +HGNC:12809 XIC X chromosome inactivation center other region Approved Xq12-q13 Xq12-q13 1989-06-02 2010-04-20 7502 "6198418|1985270" +HGNC:14301 XIRP1 xin actin binding repeat containing 1 protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "DKFZp451D042|Xin" CMYA1 cardiomyopathy associated 1 2002-04-03 2007-06-27 2015-04-29 2016-10-05 165904 ENSG00000168334 OTTHUMG00000131297 uc003cjk.3 AW755250 XM_093522 "CCDS2683|CCDS56245" Q702N8 "12203715|15454575" MGI:1333878 RGD:1304776 XIRP1 609777 +HGNC:14303 XIRP2 xin actin binding repeat containing 2 protein-coding gene gene with protein product Approved 2q24.3 02q24.3 myomaxin CMYA3 cardiomyopathy associated 3 LIM domain containing 1218 2002-04-03 2007-06-27 2015-04-29 2016-10-05 129446 ENSG00000163092 OTTHUMG00000154027 uc002udx.4 AK056582 NM_152381 "CCDS42768|CCDS42769|CCDS56143|CCDS56144|CCDS56145" A4UGR9 "17046827|12203715|15454575" MGI:2685198 RGD:1302980 XIRP2 609778 +HGNC:40679 XIRP2-AS1 XIRP2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q24.3 02q24.3 XIRP2 antisense RNA 1 (non-protein coding) 2011-11-18 2012-08-15 2014-11-19 100874011 ENSG00000254552 OTTHUMG00000165270 uc032oir.2 NR_046665 +HGNC:12810 XIST X inactive specific transcript (non-protein coding) non-coding RNA RNA, long non-coding Approved Xq13.2 Xq13.2 "NCRNA00001|DXS1089|swd66|LINC00001" long intergenic non-protein coding RNA 1 DXS399E "X (inactive)-specific transcript|X (inactive)-specific transcript (non-protein coding)" Long non-coding RNAs 788 1991-02-04 2013-02-07 2014-10-22 7503 ENSG00000229807 OTTHUMG00000021839 uc004ebm.3 M97168 NR_001564 "1985261|2034279" MGI:98974 314670 xist +HGNC:12811 XK X-linked Kx blood group protein-coding gene gene with protein product Approved Xp21.1 Xp21.1 "XKR1|Kx|X1k" "Kx antigen|McLeod syndrome" "NA|NAC" "Kell blood group precursor (McLeod phenotype)|XK, Kell blood group complex subunit (McLeod syndrome)|neuroacanthocytosis|neurocanthocytosis" "Blood group antigens|XK related family" "454|955" 2001-06-22 2014-06-18 2016-10-12 7504 ENSG00000047597 OTTHUMG00000033171 uc004ddq.4 Z32684 NM_021083 CCDS14241 P51811 "8004674|11761473" MGI:103569 RGD:1359650 "Blood Group Antigen Mutation Database|http://www.ncbi.nlm.nih.gov/gv/mhc/xslcgi.fcgi?cmd=bgmut/home|Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=XK|LRG_812|http://www.lrg-sequence.org/LRG/LRG_812" XK 314850 120562 +HGNC:28778 XKR3 XK related 3 protein-coding gene gene with protein product Approved 22q11.1 22q11.1 "MGC57211|XTES" "X Kell blood group precursor-related family, member 3|XK, Kell blood group complex subunit-related family, member 3" XK related family 955 2005-07-28 2016-02-10 2016-02-10 150165 ENSG00000172967 OTTHUMG00000143726 uc002zlv.4 AY989815 NM_175878 CCDS42975 Q5GH77 16431037 XKR3 611674 +HGNC:29394 XKR4 XK related 4 protein-coding gene gene with protein product Approved 8q12.1 08q12.1 KIAA1889 "X Kell blood group precursor-related family, member 4|XK, Kell blood group complex subunit-related family, member 4" XK related family 955 2005-07-28 2016-02-10 2016-02-10 114786 ENSG00000206579 OTTHUMG00000164288 uc003xsf.4 AY534241 NM_052898 CCDS34893 Q5GH76 MGI:3528744 RGD:1549780 XKR4 +HGNC:20782 XKR5 XK related 5 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "X Kell blood group precursor-related family, member 5|XK, Kell blood group complex subunit-related family, member 5" XK related family 955 2005-07-28 2016-02-10 2016-02-10 389610 ENSG00000275591 OTTHUMG00000153652 uc033baq.2 AY358489 NM_207411 CCDS47763 Q6UX68 MGI:2442327 RGD:1359335 XKR5 +HGNC:27806 XKR6 XK related 6 protein-coding gene gene with protein product Approved 8p23.1 08p23.1 "C8orf7|C8orf21|C8orf5" "chromosome 8 open reading frame 7|chromosome 8 open reading frame 21|X Kell blood group precursor-related family, member 6|chromosome 8 open reading frame 5|XK, Kell blood group complex subunit-related family, member 6" XK related family 955 2004-06-11 2005-07-28 2016-02-10 2016-02-10 286046 ENSG00000171044 OTTHUMG00000129351 uc003wtk.3 BC024146 NM_173683 CCDS5978 Q5GH73 MGI:2447765 RGD:1310719 XKR6 +HGNC:23062 XKR7 XK related 7 protein-coding gene gene with protein product Approved 20q11.21 20q11.21 dJ310O13.4 C20orf159 "X Kell blood group precursor-related family, member 7|chromosome 20 open reading frame 159|XK, Kell blood group complex subunit-related family, member 7" XK related family 955 2005-07-28 2016-02-10 2016-02-10 343702 ENSG00000260903 OTTHUMG00000032198 uc002wxe.4 AY534245 NM_001011718 CCDS33459 Q5GH72 MGI:3526711 RGD:1359224 XKR7 +HGNC:25508 XKR8 XK related 8 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 FLJ10307 "X Kell blood group precursor-related family, member 8|XK, Kell blood group complex subunit-related family, member 8" XK related family 955 2005-07-28 2016-02-10 2016-02-10 55113 ENSG00000158156 OTTHUMG00000003912 uc001bph.2 AK091615 NM_018053 CCDS315 Q9H6D3 23845944 MGI:2685877 RGD:1305649 XKR8 +HGNC:20937 XKR9 XK related 9 protein-coding gene gene with protein product Approved 8q13.3 08q13.3 "X Kell blood group precursor-related family, member 9|XK, Kell blood group complex subunit-related family, member 9" XK related family 955 2005-07-28 2016-02-10 2016-02-10 389668 ENSG00000221947 OTTHUMG00000164431 uc003xyq.3 AY534247 NM_001011720 CCDS34905 Q5GH70 MGI:2686466 RGD:1359260 XKR9 +HGNC:29845 XKRX XK related, X-linked protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 "XPLAC|XKR2" "X Kell blood group precursor-related, X-linked|XK, Kell blood group complex subunit-related, X-linked" XK related family 955 2004-06-17 2016-02-10 2016-10-05 402415 ENSG00000182489 OTTHUMG00000022010 uc004egn.3 AY589511 NM_212559 CCDS14476 Q6PP77 MGI:3584011 RGD:1359223 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=XKRX XKRX 300684 +HGNC:18571 XKRY XK related, Y-linked other unknown Approved Yq11.222 Yq11.222 XKRY1 "X Kell blood group precursor-related, Y-linked|XK, Kell blood group complex subunit-related, Y-linked" XK related family 955 2002-05-22 2016-02-10 2016-02-10 9082 ENSG00000250868 OTTHUMG00000041664 AF000997 NM_004677 O14609 9381176 400015 +HGNC:23922 XKRY2 XK related, Y-linked 2 other unknown Approved Yq11.222 Yq11.222 XKRYP7 "X Kell blood group precursor-related, Y-linked pseudogene 7|X Kell blood group precursor-related, Y-linked 2|XK, Kell blood group complex subunit-related, Y-linked 2" XK related family 955 2004-04-30 2004-07-23 2016-02-10 2016-10-05 353515 ENSG00000244646 OTTHUMG00000041953 NM_001002906 A2RUG3 12815422 +HGNC:23908 XKRYP1 XK related, Y-linked pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 "X Kell blood group precursor-related, Y-linked pseudogene 1|XK, Kell blood group complex subunit-related, Y-linked pseudogene 1" 2004-02-05 2016-02-10 2016-10-05 379028 ENSG00000238067 OTTHUMG00000041984 NG_003094 12815422 PGOHUM00000233991 +HGNC:23909 XKRYP2 XK related, Y-linked pseudogene 2 pseudogene pseudogene Approved Yq11.222 Yq11.222 "X Kell blood group precursor-related, Y-linked pseudogene 2|XK, Kell blood group complex subunit-related, Y-linked pseudogene 2" 2004-02-05 2016-02-10 2016-02-10 379029 ENSG00000230904 OTTHUMG00000041961 NG_003095 12815422 PGOHUM00000233781 +HGNC:23910 XKRYP3 XK related, Y-linked pseudogene 3 pseudogene pseudogene Approved Yq11.223 Yq11.223 "X Kell blood group precursor-related, Y-linked pseudogene 3|XK, Kell blood group complex subunit-related, Y-linked pseudogene 3" 2004-02-05 2016-02-10 2016-02-10 379030 ENSG00000236620 OTTHUMG00000044981 NG_003096 12815422 PGOHUM00000233828 +HGNC:23911 XKRYP4 XK related, Y-linked pseudogene 4 pseudogene pseudogene Approved Yq11.23 Yq11.23 "X Kell blood group precursor-related, Y-linked pseudogene 4|XK, Kell blood group complex subunit-related, Y-linked pseudogene 4" 2004-02-05 2016-02-10 2016-10-05 379031 ENSG00000231026 OTTHUMG00000044982 NG_003097 12815422 PGOHUM00000233833 +HGNC:23912 XKRYP5 XK related, Y-linked pseudogene 5 pseudogene pseudogene Approved Yq11.23 Yq11.23 "X Kell blood group precursor-related, Y-linked pseudogene 5|XK, Kell blood group complex subunit-related, Y-linked pseudogene 5" 2004-02-05 2016-02-10 2016-10-05 379032 ENSG00000223406 OTTHUMG00000045259 NG_003098 12815422 PGOHUM00000234089 +HGNC:23913 XKRYP6 XK related, Y-linked pseudogene 6 pseudogene pseudogene Approved Yq11.23 Yq11.23 "X Kell blood group precursor-related, Y-linked pseudogene 6|XK, Kell blood group complex subunit-related, Y-linked pseudogene 6" 2004-02-05 2016-02-10 2016-02-10 379033 ENSG00000237546 OTTHUMG00000045267 NG_003099 12815422 PGOHUM00000234094 +HGNC:12813 XM Xm(a) antigen phenotype phenotype only Approved X X 2001-06-22 2012-10-02 7506 314900 +HGNC:12814 XPA XPA, DNA damage recognition and repair factor protein-coding gene gene with protein product Approved 9q22.33 09q22.33 "XPAC|XP1" xeroderma pigmentosum, complementation group A Xeroderma pigmentosum complementation groups 1125 1990-09-10 2016-05-23 2016-10-12 7507 ENSG00000136936 OTTHUMG00000020330 uc004axr.5 D14533 NM_000380 CCDS6729 P23025 MGI:99135 RGD:1308769 LRG_471|http://www.lrg-sequence.org/LRG/LRG_471 XPA 611153 120567 +HGNC:12815 XPAC entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12816 XPC XPC complex subunit, DNA damage recognition and repair factor protein-coding gene gene with protein product Approved 3p25.1 03p25.1 "XPCC|RAD4" xeroderma pigmentosum group C protein xeroderma pigmentosum, complementation group C Xeroderma pigmentosum complementation groups 1125 1992-10-05 2016-05-23 2016-10-12 7508 ENSG00000154767 OTTHUMG00000155526 uc011ave.3 NM_004628 CCDS46763 Q01831 1522891 MGI:103557 RGD:1305760 LRG_472|http://www.lrg-sequence.org/LRG/LRG_472 XPC 613208 120571 +HGNC:12822 XPNPEP1 X-prolyl aminopeptidase 1 protein-coding gene gene with protein product Approved 10q25.1 10q25.1 Xaa-Pro aminopeptidase 1 "XPNPEP|XPNPEPL1|XPNPEPL" "X-prolyl aminopeptidase (aminopeptidase P)-like|X-prolyl aminopeptidase (aminopeptidase P) 1, soluble" Aminopeptidases 104 1993-04-15 2016-07-04 2016-10-05 7511 ENSG00000108039 OTTHUMG00000019029 uc001kyp.2 NM_001324132 "CCDS53576|CCDS7560|CCDS81498" Q9NQW7 "10871044|18515364" MGI:2180003 RGD:621274 XPNPEP1 602443 M24.009 objectId:1578 3.4.11.9 +HGNC:12823 XPNPEP2 X-prolyl aminopeptidase 2 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound|Xaa-Pro aminopeptidase 2" Aminopeptidases 104 1998-02-18 2016-07-04 2016-10-05 7512 ENSG00000122121 OTTHUMG00000022373 uc004eut.2 U90724 NM_003399 CCDS14613 O43895 "9375790|9628831" MGI:2180001 RGD:621277 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=XPNPEP2 XPNPEP2 300145 281864 M24.005 objectId:1579 3.4.11.9 +HGNC:28052 XPNPEP3 X-prolyl aminopeptidase 3 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "APP3|NPHPL1|ICP55" Intermediate Cleaving Peptidase 55 "X-prolyl aminopeptidase (aminopeptidase P) 3, putative|X-prolyl aminopeptidase 3, mitochondrial" Aminopeptidases 104 2006-08-02 2016-07-04 2016-07-04 63929 ENSG00000196236 OTTHUMG00000151312 uc003azh.4 NM_022098 "CCDS14007|CCDS74869" Q9NQH7 "15708373|20179356|24116217" MGI:2445217 RGD:1589063 XPNPEP3 613553 227083 M24.026 objectId:1580 +HGNC:12825 XPO1 exportin 1 protein-coding gene gene with protein product Approved 2p15 02p15 "CRM1|emb" chromosome region maintenance 1 homolog (yeast) "exportin 1 (CRM1, yeast, homolog)|exportin 1 (CRM1 homolog, yeast)" Exportins 547 1998-05-12 2014-02-19 2014-11-19 7514 ENSG00000082898 OTTHUMG00000152316 uc002sbj.4 Y08614 NM_003400 CCDS33205 O14980 "9205132|9368044" MGI:2144013 RGD:620517 XPO1 602559 +HGNC:17796 XPO4 exportin 4 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "FLJ13046|KIAA1721" Exportins 547 2003-03-10 2016-10-05 64328 ENSG00000132953 OTTHUMG00000016528 uc001unq.5 AB051508 NM_022459 CCDS41872 Q9C0E2 "11214970|10944119" MGI:1888526 RGD:1312015 XPO4 611449 +HGNC:17675 XPO5 exportin 5 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 KIAA1291 Exportins 547 2003-03-10 2014-11-19 57510 ENSG00000124571 OTTHUMG00000014742 uc003ovp.3 AB033117 NM_020750 CCDS47430 Q9HAV4 "11777942|12426392" MGI:1913789 RGD:1311522 XPO5 607845 +HGNC:19733 XPO6 exportin 6 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "KIAA0370|FLJ22519" RANBP20 RAN binding protein 20 Exportins 547 2002-12-03 2003-03-14 2003-03-11 2014-11-19 23214 ENSG00000169180 OTTHUMG00000176782 uc002dpa.4 AY026388 XM_055195 "CCDS42135|CCDS59266" Q96QU8 14592989 MGI:2429950 RGD:1311491 XPO6 608411 +HGNC:14108 XPO7 exportin 7 protein-coding gene gene with protein product Approved 8p21.3 08p21.3 KIAA0745 RANBP16 RAN binding protein 16 Exportins 547 2001-01-22 2003-03-14 2003-03-11 2016-10-05 23039 ENSG00000130227 OTTHUMG00000163789 uc003xaa.5 AF064729 NM_015024 CCDS47818 Q9UIA9 "11024021|9872452" MGI:1929705 RGD:1310928 XPO7 606140 +HGNC:12826 XPOT exportin for tRNA protein-coding gene gene with protein product Approved 12q14.2 12q14.2 XPO3 "exportin, tRNA (nuclear export receptor for tRNAs)|exportin, tRNA" Exportins 547 1999-09-28 2016-03-14 2016-10-05 11260 ENSG00000184575 OTTHUMG00000168794 uc001ssb.4 AF039022 NM_007235 CCDS31852 O43592 "9660920|9512417" MGI:1920442 RGD:1305562 XPOT 603180 +HGNC:16586 XPOTP1 exportin for tRNA pseudogene 1 pseudogene pseudogene Approved 20q11.22 20q11.22 "dJ785G19.1|XPO3P1" "exportin, tRNA (nuclear export receptor for tRNAs) pseudogene 1|exportin, tRNA pseudogene 1" 2001-09-17 2016-03-14 2016-07-22 170559 ENSG00000214185 OTTHUMG00000032292 AL035458 NG_001062 PGOHUM00000296978 +HGNC:12827 XPR1 xenotropic and polytropic retrovirus receptor 1 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 "SYG1|X3" xenotropic and polytropic retrovirus receptor 1999-02-19 2010-04-23 2016-10-05 9213 ENSG00000143324 OTTHUMG00000035116 uc001goi.4 AF099082 NM_004736 "CCDS1340|CCDS44284" Q9UBH6 9990033 MGI:97932 RGD:1306554 XPR1 605237 431657 +HGNC:12828 XRCC1 X-ray repair cross complementing 1 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 RCC X-ray repair complementing defective repair in Chinese hamster cells 1 2001-06-22 2016-06-02 2016-10-12 7515 ENSG00000073050 OTTHUMG00000182699 uc002owt.3 M36089 NM_006297 CCDS12624 P18887 2247054 MGI:99137 RGD:619823 LRG_784|http://www.lrg-sequence.org/LRG/LRG_784 XRCC1 194360 +HGNC:12829 XRCC2 X-ray repair cross complementing 2 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 FANCU RAD51-like X-ray repair complementing defective repair in Chinese hamster cells 2 Fanconi anemia complementation groups 548 1995-02-07 2016-06-02 2016-10-05 7516 ENSG00000196584 OTTHUMG00000151470 uc003wld.4 Y08837 NM_005431 CCDS5933 O43543 "7607692|10422536|27208205" MGI:1927345 RGD:1564823 XRCC2 600375 299649 +HGNC:12830 XRCC3 X-ray repair cross complementing 3 protein-coding gene gene with protein product Approved 14q32.3 14q32.3 RAD51-like X-ray repair complementing defective repair in Chinese hamster cells 3 1995-08-11 2016-06-02 2016-06-02 7517 ENSG00000126215 OTTHUMG00000169228 uc001ynz.5 AF035586 NM_005432 CCDS9984 O43542 7603995 MGI:1921585 RGD:1306849 XRCC3 600675 +HGNC:12831 XRCC4 X-ray repair cross complementing 4 protein-coding gene gene with protein product Approved 5q14.2 05q14.2 "X-ray repair, complementing defective, repair in Chinese hamster|DNA repair protein XRCC4" X-ray repair complementing defective repair in Chinese hamster cells 4 1990-10-16 2016-06-02 2016-06-02 7518 ENSG00000152422 OTTHUMG00000131319 uc003kie.4 AB017445 NM_022550 "CCDS4058|CCDS4059" Q13426 "1697445|7665175" MGI:1333799 RGD:1359573 XRCC4 194363 460650 +HGNC:12832 XRCC4L entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12833 XRCC5 X-ray repair cross complementing 5 protein-coding gene gene with protein product Approved 2q35 02q35 "KU80|KARP-1|Ku86|KUB2" Ku autoantigen, 80kDa X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining; Ku autoantigen, 80kD) 1992-01-22 2016-06-02 2016-06-02 7520 ENSG00000079246 OTTHUMG00000133059 uc002vfy.4 AF039597 NM_021141 CCDS2402 P13010 "9636207|9214634" MGI:104517 RGD:3976 XRCC5 194364 3.6.4.- +HGNC:4055 XRCC6 X-ray repair cross complementing 6 protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "D22S731|D22S671|KU70|ML8" Ku autoantigen, 70kDa G22P1 "thyroid autoantigen 70kD (Ku antigen)|thyroid autoantigen 70kDa (Ku antigen)|X-ray repair complementing defective repair in Chinese hamster cells 6" DNA helicases 1167 1988-05-11 2005-05-06 2016-06-02 2016-06-02 2547 ENSG00000196419 OTTHUMG00000151190 uc003bao.3 J04607 NM_001469 "CCDS14021|CCDS74870|CCDS74871" P12956 "9200330|9223317" MGI:95606 RGD:2643 XRCC6 152690 +HGNC:32439 XRCC6BP2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-08-07 +HGNC:45183 XRCC6P1 X-ray repair cross complementing 6 pseudogene 1 pseudogene pseudogene Approved 10q23.33 10q23.33 X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 1 2013-03-04 2016-06-02 2016-06-02 387703 ENSG00000237417 OTTHUMG00000018770 NG_028753 PGOHUM00000238588 +HGNC:45184 XRCC6P2 X-ray repair cross complementing 6 pseudogene 2 pseudogene pseudogene Approved Xq28 Xq28 X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 2 2013-03-04 2016-06-02 2016-06-02 389901 ENSG00000234825 OTTHUMG00000022637 PGOHUM00000241596 +HGNC:45185 XRCC6P3 X-ray repair cross complementing 6 pseudogene 3 pseudogene pseudogene Approved 1q41 01q41 X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 3 2013-03-04 2016-06-02 2016-06-02 127086 ENSG00000230318 OTTHUMG00000037093 NG_022752 PGOHUM00000244427 +HGNC:45186 XRCC6P4 X-ray repair cross complementing 6 pseudogene 4 pseudogene pseudogene Approved 8q12.3 08q12.3 X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 4 2013-03-04 2016-06-02 2016-06-02 100422546 ENSG00000253517 OTTHUMG00000164362 NG_026031 PGOHUM00000260407 +HGNC:45187 XRCC6P5 X-ray repair cross complementing 6 pseudogene 5 pseudogene pseudogene Approved Xq22.1 Xq22.1 X-ray repair complementing defective repair in Chinese hamster cells 6 pseudogene 5 2013-03-04 2016-06-02 2016-06-02 442459 ENSG00000215070 OTTHUMG00000021996 NR_024608 PGOHUM00000263904 +HGNC:12834 XRCC8 X-ray repair cross complementing 8 phenotype phenotype only Approved reserved reserved X-ray repair complementing defective repair in Chinese hamster cells 8 1997-08-28 2016-06-02 2016-06-02 7521 "8879275|10887218" +HGNC:30654 XRN1 5'-3' exoribonuclease 1 protein-coding gene gene with protein product Approved 3q23 03q23 SEP1 2004-07-12 2014-11-18 54464 ENSG00000114127 OTTHUMG00000159251 uc003eus.4 AY137776 NM_019001 "CCDS3123|CCDS63801|CCDS75028" Q8IZH2 12515382 MGI:891964 RGD:1309713 XRN1 607994 +HGNC:12836 XRN2 5'-3' exoribonuclease 2 protein-coding gene gene with protein product Approved 20p11.22 20p11.22 1999-08-19 2016-10-05 22803 ENSG00000088930 OTTHUMG00000032025 uc002wsf.2 AF064257 NM_012255 CCDS13144 Q9H0D6 10409438 MGI:894687 RGD:1310218 XRN2 608851 3.1.13.- +HGNC:18868 XRRA1 X-ray radiation resistance associated 1 protein-coding gene gene with protein product Approved 11q13.4 11q13.4 FLJ00225 2003-08-13 2015-08-26 143570 ENSG00000166435 OTTHUMG00000165515 uc009yub.4 AK074152 NM_182969 "CCDS44680|CCDS58159|CCDS58160" Q6P2D8 "12908878|17295261" MGI:2181647 RGD:1305502 XRRA1 609788 +HGNC:12837 XS X-linked suppressor of LU antigens phenotype phenotype only Approved Xp21.2-q21.1 Xp21.2-q21.1 2001-06-22 2012-10-02 7523 309050 +HGNC:12838 XWNPEP X-tryptophanyl aminopeptidase other unknown Approved reserved reserved aminopeptidase W Aminopeptidases 104 1993-04-15 2012-07-12 2013-04-03 7524 3.4.11.16 +HGNC:26639 XXYLT1 xyloside xylosyltransferase 1 protein-coding gene gene with protein product Approved 3q29 03q29 FLJ35155 C3orf21 chromosome 3 open reading frame 21 Glycosyltransferase family 8 436 2005-02-07 2011-10-19 2011-10-19 2014-11-19 152002 ENSG00000173950 OTTHUMG00000155915 uc003fum.5 AK075551 NM_152531 "CCDS43188|CCDS77874" Q8NBI6 22117070 MGI:2146443 RGD:1308154 XXYLT1 614552 +HGNC:41153 XXYLT1-AS1 XXYLT1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q29 03q29 XXYLT1 antisense RNA 1 (non-protein coding) 2012-03-07 2012-08-15 2014-11-19 100874528 ENSG00000233303 OTTHUMG00000155917 uc032sny.1 BF509707 NR_104188 +HGNC:41154 XXYLT1-AS2 XXYLT1 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q29 03q29 XXYLT1 antisense RNA 2 (non-protein coding) 2012-03-07 2012-08-15 2014-11-19 101410543 ENSG00000230266 OTTHUMG00000155916 uc031scz.2 "R83154|AW963078" NR_102710 +HGNC:12839 XYLB xylulokinase protein-coding gene gene with protein product Approved 3p22.2 03p22.2 "FLJ10343|FLJ12539" "D-xylulokinase|xylulose kinase" xylulokinase homolog (H. influenzae) 1998-12-02 2016-06-30 2016-10-05 9942 ENSG00000093217 OTTHUMG00000131294 uc003cic.3 AB015046 NM_005108 CCDS2678 O75191 "23179721|9763671" MGI:2142985 RGD:1307372 XYLB 604049 +HGNC:15516 XYLT1 xylosyltransferase 1 protein-coding gene gene with protein product Approved 16p12.3 16p12.3 "XT-I|PXYLT1" protein xylosyltransferase 1 xylosyltransferase I Glucosaminyl (N-acetyl) transferases/xylosyltransferases 441 2001-04-06 2016-04-05 2016-10-05 64131 ENSG00000103489 OTTHUMG00000129975 uc002dfa.4 AJ277441 NM_022166 CCDS10569 Q86Y38 "11099377|23982343" MGI:2451073 RGD:620093 XYLT1 608124 376942 2.4.2.26 +HGNC:15517 XYLT2 xylosyltransferase 2 protein-coding gene gene with protein product Approved 17q21.33 17q21.33 "XT-II|PXYLT2" protein xylosyltransferase 2 xylosyltransferase II Glucosaminyl (N-acetyl) transferases/xylosyltransferases 441 2001-04-06 2016-04-05 2016-04-05 64132 ENSG00000015532 OTTHUMG00000162057 uc002iqo.5 AJ277442 NM_022167 CCDS11563 Q9H1B5 11099377 MGI:2444797 RGD:619765 XYLT2 608125 434703 2.4.2.26 +HGNC:24857 YAE1D1 Yae1 domain containing 1 protein-coding gene gene with protein product Approved 7p14.1 07p14.1 GK003 C7orf36 chromosome 7 open reading frame 36 2004-02-02 2011-11-24 2011-11-24 2016-06-07 57002 ENSG00000241127 OTTHUMG00000128689 uc003thc.5 AF226046 NM_020192 "CCDS5459|CCDS64630" Q9NRH1 26182403 MGI:1914258 RGD:1306613 YAE1D1 +HGNC:17363 YAF2 YY1 associated factor 2 protein-coding gene gene with protein product Approved 12q12 12q12 Zinc fingers RANBP2-type 89 2001-12-13 2015-07-14 10138 ENSG00000015153 OTTHUMG00000169380 uc001rmv.4 U72209 XM_011537728 "CCDS31775|CCDS53778|CCDS53779|CCDS53780" Q8IY57 9016636 MGI:1914307 RGD:1582851 YAF2 607534 +HGNC:49034 YAM1 YY1-associated myogenesis RNA 1 non-coding RNA RNA, long non-coding Approved 16p11.2 16p11.2 Yam-1 YY1-associated muscle lncRNA 1 YY1-associated myogenesis 1 (non-protein coding) Long non-coding RNAs 788 2013-08-16 2013-12-06 2014-07-18 107161157 23942234 +HGNC:16262 YAP1 Yes associated protein 1 protein-coding gene gene with protein product Approved 11q22.1 11q22.1 YAP65 Yes-associated protein 1, 65kDa 2001-07-17 2015-11-20 2016-10-05 10413 ENSG00000137693 OTTHUMG00000167322 uc001pgt.3 NM_006106 "CCDS44716|CCDS53699|CCDS53700|CCDS60944|CCDS60945|CCDS73373|CCDS73374|CCDS8314" P46937 7782338 MGI:103262 RGD:1306035 YAP1 606608 395071 +HGNC:38016 YAP1P1 Yes associated protein 1 pseudogene 1 pseudogene pseudogene Approved 6q24.3 06q24.3 2010-03-19 2015-11-20 2015-11-20 442266 ENSG00000220494 OTTHUMG00000015765 NG_022376 PGOHUM00000243810 +HGNC:38017 YAP1P2 Yes associated protein 1 pseudogene 2 pseudogene pseudogene Approved Xq23 Xq23 2010-03-19 2015-11-20 2015-11-20 100419909 ENSG00000236080 OTTHUMG00000022228 NG_022692 PGOHUM00000241958 +HGNC:43890 YAP1P3 Yes associated protein 1 pseudogene 3 pseudogene pseudogene Approved 6q22.32 06q22.32 2012-04-23 2015-11-20 2015-11-20 100419883 NG_025861 PGOHUM00000243353 +HGNC:12840 YARS tyrosyl-tRNA synthetase protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "YTS|YRS|tyrRS" tyrosine tRNA ligase 1, cytoplasmic Aminoacyl tRNA synthetases, Class I 131 1999-01-29 2016-10-12 8565 ENSG00000134684 OTTHUMG00000003933 uc001bvy.2 U89436 NM_003680 CCDS368 P54577 "8552597|9162081" MGI:2147627 RGD:1307616 LRG_273|http://www.lrg-sequence.org/LRG/LRG_273 YARS 603623 139906 6.1.1.1 +HGNC:24249 YARS2 tyrosyl-tRNA synthetase 2 protein-coding gene gene with protein product Approved 12p11.21 12p11.21 "FLJ13995|CGI-04|mt-TyrRS" tyrosine tRNA ligase 2, mitochondrial tyrosyl-tRNA synthetase 2, mitochondrial Aminoacyl tRNA synthetases, Class I 131 2005-06-28 2015-12-04 2015-12-04 51067 ENSG00000139131 OTTHUMG00000169454 uc001rli.4 AF132939 NM_015936 CCDS31770 Q9Y2Z4 "15779907|15840810" MGI:1917370 RGD:1311696 YARS2 610957 240658 6.1.1.1 +HGNC:1299 YBEY ybeY metallopeptidase (putative) protein-coding gene gene with protein product Approved 21q22.3 21q22.3 C21orf57 chromosome 21 open reading frame 57 2000-05-23 2010-12-08 2010-12-08 2015-08-26 54059 ENSG00000182362 OTTHUMG00000090632 uc002zix.4 AK294975 NM_058181 "CCDS33591|CCDS82685|CCDS82686|CCDS82687" P58557 MGI:2656825 RGD:1308722 YBEY +HGNC:8014 YBX1 Y-box binding protein 1 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "YB-1|YB1|DBPB|NSEP-1|MDR-NF1|BP-8|CSDB|CSDA2" NSEP1 nuclease sensitive element binding protein 1 Y box binding proteins 106 1993-10-20 2005-08-11 2015-11-19 2016-10-05 4904 ENSG00000065978 OTTHUMG00000007523 uc001chs.4 BC013838 NM_004559 CCDS470 P67809 "1891370|3174636" MGI:99146 RGD:61843 YBX1 154030 +HGNC:8015 YBX1P1 Y-box binding protein 1 pseudogene 1 pseudogene pseudogene Approved 14q23.3 14q23.3 PSDBPB1 NSEP1P nuclease sensitive element binding protein 1 pseudogene 2000-04-03 2005-08-11 2015-11-19 2016-10-05 50631 ENSG00000224861 OTTHUMG00000171177 L37516 NG_001276 2977358 +HGNC:22635 YBX1P2 Y-box binding protein 1 pseudogene 2 pseudogene pseudogene Approved 7q22.3 07q22.3 TCAG_1818537 2007-07-24 2015-11-19 2015-11-19 646531 ENSG00000231167 OTTHUMG00000157401 CR601484 NG_006863 PGOHUM00000250901 +HGNC:42424 YBX1P3 Y-box binding protein 1 pseudogene 3 pseudogene pseudogene Approved 3q13.31 03q13.31 2011-07-25 2015-11-19 2015-11-19 100861556 ENSG00000240002 OTTHUMG00000159369 NG_032054 PGOHUM00000238138 +HGNC:42425 YBX1P4 Y-box binding protein 1 pseudogene 4 pseudogene pseudogene Approved 7q36.1 07q36.1 2011-07-25 2015-11-19 2015-11-19 100131012 ENSG00000213188 OTTHUMG00000157256 NG_011685 PGOHUM00000233651 +HGNC:42426 YBX1P5 Y-box binding protein 1 pseudogene 5 pseudogene pseudogene Approved 5q13.2 05q13.2 2011-07-25 2015-11-19 2015-11-19 100861569 ENSG00000251108 OTTHUMG00000163415 NG_032056 +HGNC:42427 YBX1P6 Y-box binding protein 1 pseudogene 6 pseudogene pseudogene Approved 9q31.3 09q31.3 2011-07-25 2015-11-19 2015-11-19 402375 ENSG00000213539 OTTHUMG00000020474 NG_030460 PGOHUM00000236306 +HGNC:42428 YBX1P7 Y-box binding protein 1 pseudogene 7 pseudogene pseudogene Approved 2q21.2 02q21.2 2011-07-25 2015-11-19 2015-11-19 100861431 ENSG00000232349 OTTHUMG00000153549 NG_032001 PGOHUM00000240350 +HGNC:42429 YBX1P8 Y-box binding protein 1 pseudogene 8 pseudogene pseudogene Approved Xp11.3 Xp11.3 2011-07-25 2015-11-19 2016-10-05 100861476 ENSG00000226048 OTTHUMG00000021425 NG_032031 PGOHUM00000263336 +HGNC:42430 YBX1P9 Y-box binding protein 1 pseudogene 9 pseudogene pseudogene Approved 1q42.12 01q42.12 2011-07-25 2015-11-19 2015-11-19 100861470 ENSG00000236994 OTTHUMG00000037559 NG_032027 +HGNC:42432 YBX1P10 Y-box binding protein 1 pseudogene 10 pseudogene pseudogene Approved 9p13.3 09p13.3 2011-07-25 2015-11-19 2015-11-19 158373 ENSG00000213866 OTTHUMG00000019890 NG_003008 PGOHUM00000236027 +HGNC:17948 YBX2 Y-box binding protein 2 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "MSY2|CSDA3|Contrin" Y box binding proteins 106 2005-08-11 2015-11-19 2015-11-19 51087 ENSG00000006047 OTTHUMG00000177992 uc002gfq.3 AF096834 NM_015982 CCDS11098 Q9Y2T7 "10100484|9780336" MGI:1096372 RGD:1305068 YBX2 611447 +HGNC:49498 YBX2P1 Y-box binding protein 2 pseudogene 1 pseudogene pseudogene Approved 10q26.13 10q26.13 2013-12-20 2015-11-19 2015-11-19 100124332 ENSG00000213438 OTTHUMG00000019210 NG_006652 PGOHUM00000238962 +HGNC:2428 YBX3 Y-box binding protein 3 protein-coding gene gene with protein product Approved 12p13.2 12p13.2 "dbpA|ZONAB|CSDA1" cold-shock domain containing A1 CSDA cold shock domain protein A Y box binding proteins 106 1998-10-23 2013-03-13 2015-11-19 2016-10-05 8531 ENSG00000060138 OTTHUMG00000168409 uc001qyt.4 L29064 NM_003651 "CCDS8630|CCDS44831" P16989 "2977358|8710501" MGI:2137670 RGD:621056 603437 +HGNC:2429 YBX3P1 Y-box binding protein 3 pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 CSDAP1 cold shock domain protein A pseudogene 1 1999-07-13 2013-03-13 2015-11-19 2015-11-19 440359 Y17508 NR_027011 10343102 PGOHUM00000248811 +HGNC:27158 YDJC YdjC homolog (bacterial) protein-coding gene gene with protein product Approved 22q11.21 22q11.21 2008-02-26 2015-07-14 150223 ENSG00000161179 OTTHUMG00000150822 uc002zvb.4 XR_937814 CCDS33613 A8MPS7 18177738 MGI:1916351 RGD:1359227 YDJC +HGNC:25489 YEATS2 YEATS domain containing 2 protein-coding gene gene with protein product Approved 3q27.1 03q27.1 "FLJ10201|FLJ12841|FLJ13308|KIAA1197" "ATAC complex|YEATS domain containing" "1058|1283" 2004-08-18 2016-10-05 55689 ENSG00000163872 OTTHUMG00000156898 uc003fly.2 AB033023 NM_018023 CCDS43175 Q9ULM3 10574462 MGI:2447762 RGD:1566176 YEATS2 613373 +HGNC:41101 YEATS2-AS1 YEATS2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q27.1 03q27.1 YEATS2 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100874113 ENSG00000233885 OTTHUMG00000156899 uc062qpn.1 +HGNC:24859 YEATS4 YEATS domain containing 4 protein-coding gene gene with protein product Approved 12q15 12q15 "NuBI-1|GAS41|YAF9" "YEATS domain containing| SRCAP complex" "1283|1329" 2004-08-18 2015-07-22 8089 ENSG00000127337 OTTHUMG00000169358 uc001sux.4 AJ245746 NM_006530 "CCDS8990|CCDS73495" O95619 "9302258|11903063" MGI:1927224 RGD:1305741 YEATS4 602116 +HGNC:12841 YES1 YES proto-oncogene 1, Src family tyrosine kinase protein-coding gene gene with protein product Approved 18p11.32 18p11.32 "Yes|c-yes|HsT441" v-yes-1 Yamaguchi sarcoma viral oncogene homolog 1 SH2 domain containing 741 1986-01-01 2014-06-26 2016-10-05 7525 ENSG00000176105 OTTHUMG00000131472 uc002kkz.4 M15990 NM_005433 CCDS11824 P07947 2983418 MGI:99147 RGD:3977 YES1 164880 objectId:2284 +HGNC:12842 YES1P1 YES1 pseudogene 1 pseudogene pseudogene Approved 22q12.1 22q12.1 D22S670 "SYR|YES2|YESP" v-yes-1 Yamaguchi sarcoma viral oncogene homolog pseudogene 1988-08-31 2014-06-25 2014-06-25 2014-06-25 7526 ENSG00000224003 OTTHUMG00000150872 NG_001213 PGOHUM00000246552 +HGNC:16688 YIF1A Yip1 interacting factor homolog A, membrane trafficking protein protein-coding gene gene with protein product Approved 11q13.2 11q13.2 "YIF1P|54TM|FinGER7" YIF1 Yip1 interacting factor homolog (S. cerevisiae) YIP family 1144 2003-05-28 2005-06-07 2016-01-18 2016-10-05 10897 ENSG00000174851 OTTHUMG00000102079 uc001ohk.5 AF004876 NM_020470 "CCDS8132|CCDS73325" O95070 "8824393|10970842|18718466" MGI:1915340 RGD:628749 YIF1A 611484 +HGNC:30511 YIF1B Yip1 interacting factor homolog B, membrane trafficking protein protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FinGER8 Yip1 interacting factor homolog B (S. cerevisiae) YIP family 1144 2005-03-14 2016-01-18 2016-01-18 90522 ENSG00000167645 OTTHUMG00000182324 uc002ohz.3 AL833382 NM_033557 "CCDS12512|CCDS33010|CCDS46066|CCDS46067" Q5BJH7 12975309 MGI:1924504 RGD:735199 YIF1B +HGNC:25231 YIPF1 Yip1 domain family member 1 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "DJ167A19.1|FinGER1" Yip1 domain family, member 1 Yip1 domain containing 105 2005-07-04 2015-11-11 2016-10-05 54432 ENSG00000058799 OTTHUMG00000008074 uc001cvu.4 BC009674 NM_018982 CCDS584 Q9Y548 12477932 MGI:1915532 RGD:735206 YIPF1 +HGNC:28476 YIPF2 Yip1 domain family member 2 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "MGC3262|FinGER2" Yip1 domain family, member 2 Yip1 domain containing 105 2005-07-04 2015-11-11 2015-11-11 78992 ENSG00000130733 OTTHUMG00000180796 uc002mqc.4 BC013014 NM_024029 "CCDS12251|CCDS82293" Q9BWQ6 12477932 MGI:1922016 RGD:1307512 YIPF2 +HGNC:21023 YIPF3 Yip1 domain family member 3 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "DKFZp566C243|KLIP1|dJ337H4.3|FinGER3" C6orf109 "chromosome 6 open reading frame 109|Yip1 domain family, member 3" Yip1 domain containing 105 2003-11-25 2005-07-04 2015-11-11 2015-11-11 25844 ENSG00000137207 OTTHUMG00000014738 uc003ovl.2 AK000946 NM_015388 CCDS4899 Q9GZM5 MGI:106280 RGD:1308185 YIPF3 609775 +HGNC:28145 YIPF4 Yip1 domain family member 4 protein-coding gene gene with protein product Approved 2p22.3 02p22.3 "MGC11061|FinGER4" Yip1 domain family, member 4 Yip1 domain containing 105 2005-07-04 2015-11-11 2015-11-11 84272 ENSG00000119820 OTTHUMG00000128452 uc002rok.4 AK098486 NM_032312 CCDS1781 Q9BSR8 12477932 MGI:1915114 RGD:1310157 YIPF4 +HGNC:24877 YIPF5 Yip1 domain family member 5 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "SMAP-5|FinGER5" Yip1 domain family, member 5 Yip1 domain containing 105 2005-07-04 2015-11-11 2015-11-11 81555 ENSG00000145817 OTTHUMG00000129679 uc003lnl.6 AF318329 NM_030799 "CCDS4279|CCDS64277" Q969M3 "12975309|18718466" MGI:1914430 RGD:1359165 YIPF5 611483 +HGNC:28304 YIPF6 Yip1 domain family member 6 protein-coding gene gene with protein product Approved Xq12-q13.1 Xq12-q13.1 "MGC21416|FinGER6" Yip1 domain family, member 6 Yip1 domain containing 105 2005-07-04 2015-11-11 2016-10-11 286451 ENSG00000181704 OTTHUMG00000021745 uc004dwz.4 BC012469 NM_173834 "CCDS14389|CCDS56604" Q96EC8 12477932 MGI:1925179 RGD:1566154 YIPF6 +HGNC:26825 YIPF7 Yip1 domain family member 7 protein-coding gene gene with protein product Approved 4p12 04p12 "FLJ39576|FinGER9" Yip1 domain family, member 7 Yip1 domain containing 105 2005-07-04 2015-11-11 2016-10-05 285525 ENSG00000177752 OTTHUMG00000160467 uc062whs.1 AK096895 NM_182592 CCDS54766 Q8N8F6 MGI:1922831 RGD:1310766 YIPF7 +HGNC:24785 YJEFN3 YjeF N-terminal domain containing 3 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "hYjeF_N3-19p13.11|FLJ44968" 2008-08-19 2014-09-11 374887 ENSG00000250067 OTTHUMG00000162251 uc010ecf.3 NM_198537 "CCDS42530|CCDS54236" A6XGL0 17533573 MGI:2681845 RGD:1563236 YJEFN3 +HGNC:16959 YKT6 YKT6 v-SNARE homolog (S. cerevisiae) protein-coding gene gene with protein product Approved 7p13 07p13 R-SNARE SNAREs 1124 2006-04-21 2016-04-26 10652 ENSG00000106636 OTTHUMG00000129089 uc003tkm.4 BC007319 NM_006555 CCDS5482 O15498 "15479160|15544955" MGI:1927550 RGD:70897 YKT6 606209 +HGNC:17798 YLPM1 YLP motif containing 1 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "ZAP|PPP1R169" protein phosphatase 1, regulatory subunit 169 C14orf170 chromosome 14 open reading frame 170 Protein phosphatase 1 regulatory subunits 694 2003-11-21 2004-07-15 2004-07-15 2014-06-13 56252 ENSG00000119596 OTTHUMG00000172503 uc001xqj.5 AK090435 NM_019589 CCDS45135 P49750 7596406 MGI:1926195 RGD:1564946 YLPM1 +HGNC:12843 YME1L1 YME1 like 1 ATPase protein-coding gene gene with protein product Approved 10p12.1 10p12.1 "YME1 (S.cerevisiae)-like 1|YME1-like 1 (S. cerevisiae)|YME1-like 1 ATPase" AAA ATPases 413 1999-04-15 2015-12-04 2016-10-05 10730 ENSG00000136758 OTTHUMG00000017853 uc001itj.4 AJ132637 NM_139312 "CCDS7151|CCDS7152|CCDS58072" Q96TA2 22262461 MGI:1351651 RGD:620764 YME1L1 607472 M41.026 +HGNC:12844 YME1L1P1 YME1L1 pseudogene 1 pseudogene pseudogene Approved 22q11.1 22q11.1 YME1L2 "YME1 (S.cerevisiae)-like 2|YME1-like 2 (S. cerevisiae)|YME1-like 1 (S. cerevisiae) pseudogene 1" 1999-10-28 2010-10-15 2013-06-10 2013-06-10 23749 ENSG00000236831 OTTHUMG00000140356 NG_002636 10591208 PGOHUM00000246193 +HGNC:25035 YOD1 YOD1 deubiquitinase protein-coding gene gene with protein product Approved 1q32.1 01q32.1 "DKFZp451J1719|OTUD2|DUBA8" "YOD1 OTU deubiquinating enzyme 1 homolog ( yeast)|YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)" OTU domain containing 669 2005-05-26 2013-06-04 2016-10-05 55432 ENSG00000180667 OTTHUMG00000036032 uc001hfe.1 NM_018566 "CCDS31002|CCDS60402" Q5VVQ6 MGI:2442596 RGD:1359726 YOD1 612023 +HGNC:12845 YPEL1 yippee like 1 protein-coding gene gene with protein product Approved 22q11.21-q11.22 22q11.21-q11.22 "yippee (Drosophila) homolog-like 1|yippee-like 1 (Drosophila)" Yippee like family 1130 2000-05-05 2015-11-05 2016-10-11 29799 ENSG00000100027 OTTHUMG00000150830 uc002zvl.4 AF060862 NM_013313 CCDS13794 O60688 "11473580|15556292" MGI:1913303 RGD:2321291 YPEL1 608082 +HGNC:18326 YPEL2 yippee like 2 protein-coding gene gene with protein product Approved 17q22 17q22 FKSG4 yippee-like 2 (Drosophila) Yippee like family 1130 2004-02-20 2015-11-05 2015-11-05 388403 ENSG00000175155 OTTHUMG00000179378 uc002ixm.2 AF305195 XM_371070 CCDS32695 Q96QA6 15556292 MGI:1925114 RGD:1311564 YPEL2 609723 +HGNC:18327 YPEL3 yippee like 3 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC10500 yippee-like 3 (Drosophila) Yippee like family 1130 2004-08-12 2015-11-05 2015-11-05 83719 ENSG00000090238 OTTHUMG00000176853 uc059tai.1 AF305622 NM_031477 "CCDS42147|CCDS45459" P61236 15556292 MGI:1913340 RGD:1564579 YPEL3 609724 +HGNC:18328 YPEL4 yippee like 4 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 FLJ30213 yippee-like 4 (Drosophila) Yippee like family 1130 2004-08-12 2015-11-05 2015-11-05 219539 ENSG00000166793 OTTHUMG00000167138 uc058bnh.1 AK054775 NM_145008 CCDS7963 Q96NS1 15556292 MGI:3605071 RGD:1560142 YPEL4 609725 +HGNC:18329 YPEL5 yippee like 5 protein-coding gene gene with protein product Approved 2p23.1 02p23.1 CGI-127 yippee-like 5 (Drosophila) Yippee like family 1130 2004-06-28 2015-11-05 2016-10-05 51646 ENSG00000119801 OTTHUMG00000097839 uc002rna.5 AF135161 NM_016061 CCDS1771 P62699 15556292 MGI:1916937 RGD:1309657 YPEL5 609726 +HGNC:50555 YPEL5P1 YPEL5 pseudogene 1 pseudogene pseudogene Approved 1q25.3 01q25.3 2014-05-21 2014-12-17 2014-12-17 100130996 ENSG00000232096 OTTHUMG00000037406 NG_023360 PGOHUM00000244360 +HGNC:50556 YPEL5P2 YPEL5 pseudogene 2 pseudogene pseudogene Approved 11p11.2 11p11.2 2014-05-21 2014-12-17 2014-12-17 100132562 ENSG00000271557 OTTHUMG00000184763 NG_028134 PGOHUM00000242664 +HGNC:50557 YPEL5P3 YPEL5 pseudogene 3 pseudogene pseudogene Approved 12q23.1 12q23.1 2014-05-21 2014-12-17 2014-12-17 100653396 ENSG00000258251 OTTHUMG00000170362 NG_029645 PGOHUM00000239551 +HGNC:28905 YRDC yrdC N6-threonylcarbamoyltransferase domain containing protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "FLJ23476|IRIP|SUA5" ischemia/reperfusion inducible protein "yrdC domain containing (E.coli)|yrdC domain containing (E. coli)" 2005-08-08 2016-04-12 2016-04-12 79693 ENSG00000196449 OTTHUMG00000004318 uc001cca.2 NM_024640 CCDS30675 Q86U90 12730717 MGI:2387201 RGD:708492 YRDC 612276 +HGNC:39919 YRDCP1 yrdC N(6)-threonylcarbamoyltransferase domain containing pseudogene 1 pseudogene pseudogene Approved 9q22.32 09q22.32 yrdC domain containing (E. coli) pseudogene 1 2011-04-12 2013-09-12 2015-05-07 100420501 ENSG00000278486 OTTHUMG00000187831 NG_023852 PGOHUM00000303998 +HGNC:39920 YRDCP2 yrdC N(6)-threonylcarbamoyltransferase domain containing pseudogene 2 pseudogene pseudogene Approved 9q22.33 09q22.33 yrdC domain containing (E. coli) pseudogene 2 2011-04-12 2013-09-12 2015-05-07 100128237 ENSG00000236745 OTTHUMG00000020308 NG_021668 PGOHUM00000304408 +HGNC:39921 YRDCP3 yrdC N(6)-threonylcarbamoyltransferase domain containing pseudogene 3 pseudogene pseudogene Approved 21q22.2 21q22.2 yrdC domain containing (E. coli) pseudogene 3 2011-04-12 2013-09-12 2015-05-07 100861429 ENSG00000230859 OTTHUMG00000154985 NG_031997 PGOHUM00000297386 +HGNC:30626 YTHDC1 YTH domain containing 1 protein-coding gene gene with protein product Approved 4q13.2 04q13.2 "YT521|KIAA1966|YT521-B" 2006-01-31 2016-10-05 91746 ENSG00000083896 OTTHUMG00000129306 uc003hdy.4 AK098515 NM_133370 "CCDS3522|CCDS33992|CCDS82929" Q96MU7 "12368078|10564280" MGI:2443713 RGD:621706 YTHDC1 +HGNC:24721 YTHDC2 YTH domain containing 2 protein-coding gene gene with protein product Approved 5q22.2 05q22.2 "FLJ2194|FLJ10053|DKFZp564A186" 2004-06-01 2016-10-05 64848 ENSG00000047188 OTTHUMG00000128837 uc003kqn.4 AK000915 NM_022828 CCDS4113 Q9H6S0 12477932 MGI:2448561 RGD:1563192 YTHDC2 616530 +HGNC:15867 YTHDF1 YTH N6-methyladenosine RNA binding protein 1 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 FLJ20391 C20orf21 "YTH domain family 1|YTH domain family, member 1|YTH N(6)-methyladenosine RNA binding protein 1" 2001-06-21 2004-06-04 2016-04-12 2016-04-12 54915 ENSG00000149658 OTTHUMG00000032955 uc002yeh.4 AK000398 NM_017798 CCDS13511 Q9BYJ9 24284625 MGI:1917431 RGD:1308932 YTHDF1 616529 +HGNC:31681 YTHDF1P1 YTH domain family member 1 pseudogene 1 pseudogene pseudogene Approved 5q15 05q15 YTHDF1P "YTH domain family 1 pseudogene|YTH domain family, member 1 pseudogene|YTH domain family, member 1 pseudogene 1" 2004-06-01 2010-09-24 2015-11-18 2015-11-18 402220 ENSG00000251389 OTTHUMG00000162697 NG_004396 PGOHUM00000258202 +HGNC:31675 YTHDF2 YTH N6-methyladenosine RNA binding protein 2 protein-coding gene gene with protein product Approved 1p35.3 01p35.3 "HGRG8|NY-REN-2|CAHL" "YTH domain family 2|YTH domain family, member 2|YTH N(6)-methyladenosine RNA binding protein 2" 2004-06-01 2016-04-12 2016-10-05 51441 ENSG00000198492 OTTHUMG00000003648 uc021okf.2 AF155095 NM_016258 "CCDS41296|CCDS53287" Q9Y5A9 "10508479|22575960" MGI:2444233 RGD:1311321 YTHDF2 610640 +HGNC:19865 YTHDF2P1 YTH domain family member 2 pseudogene 1 pseudogene pseudogene Approved 14q21.1 14q21.1 "HGRG8|NY-REN-2" YTHDF2P "YTH domain family, member 2 pseudogene|YTH domain family, member 2 pseudogene 1" 2004-06-01 2010-09-24 2015-11-18 2015-11-18 400209 ENSG00000270503 OTTHUMG00000184431 NG_004109 10508479 PGOHUM00000292637 +HGNC:26465 YTHDF3 YTH N6-methyladenosine RNA binding protein 3 protein-coding gene gene with protein product Approved 8q12.3 08q12.3 FLJ31657 "YTH domain family 3|YTH domain family, member 3|YTH N(6)-methyladenosine RNA binding protein 3" 2004-06-01 2016-04-12 2016-04-12 253943 ENSG00000185728 OTTHUMG00000164369 uc033bnj.2 BC052970 NM_152758 "CCDS75747|CCDS75748|CCDS75749" Q7Z739 22575960 MGI:1918850 RGD:1305234 YTHDF3 +HGNC:48728 YTHDF3-AS1 YTHDF3 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 8q12.3 08q12.3 2013-06-07 2015-07-22 101410533 ENSG00000270673 OTTHUMG00000185282 "BM681776|BM967225|BQ631682" NR_102684 +HGNC:12849 YWHAB tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "14-3-3 beta|14-3-3 alpha" YWHAA "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, alpha polypeptide|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide" 14-3-3 phospho-serine/phospho-threonine binding proteins 1053 1993-09-20 2016-02-29 2016-10-05 7529 ENSG00000166913 OTTHUMG00000032549 uc002xmu.5 X57346 NM_003404 CCDS13339 P31946 "8617504|7890696" MGI:1891917 RGD:61998 YWHAB 601289 +HGNC:50294 YWHABP1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta pseudogene 1 pseudogene pseudogene Approved 9p13.1 09p13.1 2014-04-02 2016-02-29 2016-02-29 647051 ENSG00000237557 OTTHUMG00000019949 NG_021647 PGOHUM00000236462 +HGNC:50295 YWHABP2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta pseudogene 2 pseudogene pseudogene Approved 11p15.1 11p15.1 2014-04-03 2016-02-29 2016-02-29 100422666 ENSG00000256464 OTTHUMG00000167726 NG_024320 PGOHUM00000242182 +HGNC:12851 YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon protein-coding gene gene with protein product Approved 17p13.3 17p13.3 FLJ45465 14-3-3 epsilon tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 14-3-3 phospho-serine/phospho-threonine binding proteins 1053 1993-09-20 2016-02-29 2016-02-29 7531 ENSG00000108953 OTTHUMG00000134316 uc002fsj.4 U54778 NM_006761 CCDS11001 P62258 9371399 MGI:894689 RGD:62000 YWHAE 605066 269928 +HGNC:49442 YWHAEP1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 2013-12-03 2016-03-01 2016-03-01 649395 ENSG00000232727 OTTHUMG00000156252 NR_029404 PGOHUM00000302734 +HGNC:49429 YWHAEP2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2013-12-03 2016-03-01 2016-03-01 106481688 ENSG00000266162 OTTHUMG00000179532 NG_043108 PGOHUM00000293977 +HGNC:49430 YWHAEP3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 3 pseudogene pseudogene Approved 17p11.2 17p11.2 2013-12-03 2016-03-01 2016-03-01 106480273 ENSG00000263976 OTTHUMG00000130728 NG_044047 PGOHUM00000293989 +HGNC:49440 YWHAEP4 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 4 pseudogene pseudogene Approved 4q32.1 04q32.1 2013-12-03 2016-03-01 2016-03-01 106481785 ENSG00000250205 OTTHUMG00000161482 NG_045104 PGOHUM00000300038 +HGNC:49439 YWHAEP5 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 5 pseudogene pseudogene Approved 2q22.1 02q22.1 2013-12-03 2016-03-01 2016-03-01 440917 ENSG00000234645 OTTHUMG00000153613 NG_023209 PGOHUM00000298163 +HGNC:49435 YWHAEP6 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 6 pseudogene pseudogene Approved 17q12 17q12 2013-12-03 2016-03-01 2016-03-01 PGOHUM00000259217 +HGNC:49437 YWHAEP7 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 7 pseudogene pseudogene Approved 17q12 17q12 LOC284100 2013-12-03 2016-03-01 2016-03-01 284100 ENSG00000276715 OTTHUMG00000188480 NR_024178 24312300 PGOHUM00000294091 +HGNC:12852 YWHAG tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma protein-coding gene gene with protein product Approved 7q11.23 07q11.23 PPP1R170 "14-3-3 gamma|protein phosphatase 1, regulatory subunit 170" tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 14-3-3 phospho-serine/phospho-threonine binding proteins 1053 1993-09-20 2016-03-01 2016-03-01 7532 ENSG00000170027 OTTHUMG00000022862 uc011kgj.2 AF142498 NM_012479 CCDS5584 P61981 "10486217|10433554" MGI:108109 RGD:62002 YWHAG 605356 +HGNC:12853 YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta protein-coding gene gene with protein product Approved 22q12.3 22q12.3 14-3-3 eta YWHA1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide 14-3-3 phospho-serine/phospho-threonine binding proteins 1053 1991-08-06 2016-03-01 2016-10-05 7533 ENSG00000128245 OTTHUMG00000030833 uc003alz.4 X78138 NM_003405 CCDS13901 Q04917 MGI:109194 RGD:3978 YWHAH 113508 +HGNC:12854 YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding gene gene with protein product Approved 2p25.1 02p25.1 "HS1|14-3-3" protein tau "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide|protein, theta" 14-3-3 phospho-serine/phospho-threonine binding proteins 1053 1999-08-20 2016-02-29 2016-10-05 10971 ENSG00000134308 OTTHUMG00000013848 uc002qzx.5 AF070556 NM_006826 CCDS1666 P27348 11080204 MGI:891963 RGD:3979 YWHAQ 609009 +HGNC:19937 YWHAQP1 YWHAQ pseudogene 1 pseudogene pseudogene Approved 14q21.1 14q21.1 YWHAQP tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta pseudogene 2003-01-13 2010-01-12 2010-01-13 2014-11-19 319121 NG_002502 PGOHUM00000247782 +HGNC:23211 YWHAQP2 YWHAQ pseudogene 2 pseudogene pseudogene Approved 22q13.2 22q13.2 2003-10-14 2010-01-12 246716 NG_001580 11080204 +HGNC:37682 YWHAQP3 YWHAQ pseudogene 3 pseudogene pseudogene Approved 12q13.3 12q13.3 2010-01-13 2014-11-19 100128944 NG_028176 PGOHUM00000239811 +HGNC:37683 YWHAQP4 YWHAQ pseudogene 4 pseudogene pseudogene Approved 4q32.3 04q32.3 2010-01-13 2014-11-19 646954 NG_028173 PGOHUM00000246126 +HGNC:37684 YWHAQP5 YWHAQ pseudogene 5 pseudogene pseudogene Approved 2q11.2 02q11.2 2010-01-13 2014-11-19 100130391 ENSG00000236564 OTTHUMG00000153115 NG_028174 PGOHUM00000240813 +HGNC:37685 YWHAQP6 YWHAQ pseudogene 6 pseudogene pseudogene Approved 3q23 03q23 2010-01-13 2014-11-19 101290504 ENSG00000249986 OTTHUMG00000160145 NG_042187 PGOHUM00000237795 +HGNC:37686 YWHAQP7 YWHAQ pseudogene 7 pseudogene pseudogene Approved 12q21.2 12q21.2 2010-01-13 2015-07-22 100422674 ENSG00000271142 OTTHUMG00000184752 NG_028769 PGOHUM00000291739 +HGNC:37687 YWHAQP8 YWHAQ pseudogene 8 pseudogene pseudogene Approved Xq22.1 Xq22.1 2010-01-13 2014-11-19 392510 NG_005333 PGOHUM00000241467 +HGNC:37688 YWHAQP9 YWHAQ pseudogene 9 pseudogene pseudogene Approved 1q43 01q43 2010-06-17 2014-11-19 101290508 ENSG00000230019 OTTHUMG00000039601 NG_033177 PGOHUM00000244499 +HGNC:12855 YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding gene gene with protein product Approved 8q22.3 08q22.3 "KCIP-1|14-3-3-zeta" "14-3-3 zeta|14-3-3 delta" YWHAD "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, delta polypeptide|tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide" 14-3-3 phospho-serine/phospho-threonine binding proteins 1053 1993-09-20 2016-02-29 2016-02-29 7534 ENSG00000164924 OTTHUMG00000134291 uc064pcn.1 U28964 NM_145690 CCDS6290 P63104 "8617504|7890696" MGI:109484 RGD:3980 YWHAZ 601288 +HGNC:19938 YWHAZP1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 1 pseudogene pseudogene Approved 14q21.3 14q21.3 YWHAZP tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta pseudogene 2003-01-13 2006-09-21 2016-03-01 2016-03-01 319120 NG_002501 PGOHUM00000256739 +HGNC:31078 YWHAZP2 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 2 pseudogene pseudogene Approved 2q14.3 02q14.3 2004-01-26 2016-03-01 2016-03-01 150554 ENSG00000213236 OTTHUMG00000153373 NG_001553 PGOHUM00000257036 +HGNC:31101 YWHAZP3 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 3 pseudogene pseudogene Approved 10p12.2 10p12.2 2004-05-28 2016-03-01 2016-10-05 143371 ENSG00000229932 OTTHUMG00000017813 NG_001545 +HGNC:30851 YWHAZP4 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 4 pseudogene pseudogene Approved 6q22.33 06q22.33 2006-09-21 2016-03-01 2016-10-05 246737 ENSG00000213131 OTTHUMG00000015524 NG_001587 PGOHUM00000243768 +HGNC:30564 YWHAZP5 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 5 pseudogene pseudogene Approved 10q25.1 10q25.1 2007-07-31 2016-03-01 2016-03-01 86123 ENSG00000213260 OTTHUMG00000019013 NG_001531 PGOHUM00000256662 +HGNC:30849 YWHAZP6 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 6 pseudogene pseudogene Approved 9p13.3 09p13.3 2010-09-24 2016-03-01 2016-03-01 158383 ENSG00000215199 OTTHUMG00000019843 NG_001561 PGOHUM00000257221 +HGNC:39028 YWHAZP7 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 7 pseudogene pseudogene Approved Xq11.2 Xq11.2 2010-09-24 2016-03-01 2016-03-01 100130640 ENSG00000227261 OTTHUMG00000021708 NG_028959 PGOHUM00000241351 +HGNC:39029 YWHAZP8 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 8 pseudogene pseudogene Approved Xq13.2 Xq13.2 2010-09-24 2016-03-01 2016-03-01 646016 ENSG00000225664 OTTHUMG00000021828 NG_022672 PGOHUM00000257271 +HGNC:39030 YWHAZP9 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 9 pseudogene pseudogene Approved 11q12.1 11q12.1 2010-09-24 2016-03-01 2016-03-01 441609 NG_005491 +HGNC:12856 YY1 YY1 transcription factor protein-coding gene gene with protein product Approved 14q32.2 14q32.2 "NF-E1|DELTA|UCRBP|YIN-YANG-1|INO80S" "INO80 complex subunit S|Yin and Yang 1 protein" "Zinc fingers C2H2-type|INO80 complex " "28|595" 1993-09-17 2016-10-05 7528 ENSG00000100811 OTTHUMG00000150479 uc001ygy.3 BC020324 NM_003403 CCDS9957 P25490 "1655281|7912122" MGI:99150 RGD:3982 YY1 600013 +HGNC:30935 YY1AP1 YY1 associated protein 1 protein-coding gene gene with protein product Approved 1q22 01q22 "YY1AP|HCCA2|YAP" 2005-02-09 2015-09-03 55249 ENSG00000163374 OTTHUMG00000035437 uc010pgi.3 BC008766 NM_139118 "CCDS1115|CCDS1116|CCDS55643|CCDS55644|CCDS55645" Q9H869 11710830 YY1AP1 607860 +HGNC:45094 YY1P1 YY1 transcription factor pseudogene 1 pseudogene pseudogene Approved 10q22.1 10q22.1 2013-02-14 2013-02-14 100419963 ENSG00000230661 OTTHUMG00000018405 NG_025445 PGOHUM00000238524 +HGNC:45095 YY1P2 YY1 transcription factor pseudogene 2 pseudogene pseudogene Approved 2q22.1 02q22.1 2013-02-14 2013-02-14 647012 ENSG00000229104 OTTHUMG00000153634 NR_033658 PGOHUM00000240965 +HGNC:31684 YY2 YY2 transcription factor protein-coding gene gene with protein product Approved Xp22.12 Xp22.12 ZNF631 transcription factor yin yang 2 Zinc fingers C2H2-type 28 2004-05-27 2016-10-05 404281 ENSG00000230797 OTTHUMG00000021236 uc011mjp.2 AK091850 NM_206923 CCDS14202 O15391 14702039 MGI:3837947 RGD:2324567 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=YY2 YY2 300570 +HGNC:29504 ZACN zinc activated ion channel protein-coding gene gene with protein product Approved 17q25.1 17q25.1 "LGICZ|L2|ZAC|ZAC1" LGICZ1 "ligand-gated ion channel, zinc activated 1|zinc activated ligand-gated ion channel" Zinc activated channels 176 2006-01-31 2008-04-17 2016-02-05 2016-10-05 353174 ENSG00000186919 OTTHUMG00000157186 uc002jqn.3 AK122638 NM_180990 CCDS11740 Q401N2 "12381728|16083862" ZACN 610935 objectId:587 +HGNC:51915 ZACNP1 zinc activated ion channel pseudogene 1 pseudogene pseudogene Approved 4q25 04q25 zinc activated ligand-gated ion channel pseudogene 1 2015-10-06 2016-02-05 2016-02-05 101929026 ENSG00000278589 OTTHUMG00000187581 PGOHUM00000300315 +HGNC:28697 ZADH2 zinc binding alcohol dehydrogenase domain containing 2 protein-coding gene gene with protein product Approved 18q22.3 18q22.3 MGC45594 2004-06-17 2008-05-29 2015-07-16 284273 ENSG00000180011 OTTHUMG00000132858 uc002llx.4 BC033780 NM_175907 "CCDS12008|CCDS77198" Q8N4Q0 12477932 MGI:2444835 RGD:1309999 ZADH2 +HGNC:12857 ZAN zonadhesin (gene/pseudogene) protein-coding gene gene with protein product Approved 7q22.1 07q22.1 zonadhesin 1996-06-07 2013-10-10 2014-11-18 7455 ENSG00000146839 OTTHUMG00000157037 uc032zzi.1 U83191 NM_003386 "CCDS47663|CCDS47664" Q9Y493 "9799793|17033959" MGI:106656 RGD:1305044 ZAN 602372 +HGNC:12858 ZAP70 zeta chain of T cell receptor associated protein kinase 70 protein-coding gene gene with protein product Approved 2q11.2 02q11.2 "ZAP-70|STD" tyrosine-protein kinase ZAP-70 SRK "zeta-chain (TCR) associated protein kinase (70 kD)|zeta-chain (TCR) associated protein kinase 70kDa|zeta chain of T cell receptor associated protein kinase 70kDa" SH2 domain containing 741 1995-05-16 2016-06-22 2016-10-12 7535 ENSG00000115085 OTTHUMG00000153060 uc002syd.2 L05148 NM_001079 "CCDS33254|CCDS33255" P43403 1423621 MGI:99613 RGD:3983 "ZAP70base: Mutation registry for autosomal recessive ZAP70 immunodeficiency|http://structure.bmc.lu.se/idbase/ZAP70base/index2.html|LRG_126|http://www.lrg-sequence.org/LRG/LRG_126" ZAP70 176947 120579 objectId:2285 +HGNC:20436 ZAR1 zygote arrest 1 protein-coding gene gene with protein product Approved 4p11 04p11 Z3CXXC6 zinc finger, 3CxxC-type 6 Zinc fingers 3CxxC-type 137 2003-02-07 2014-11-19 326340 ENSG00000182223 OTTHUMG00000102093 uc003gyd.4 AY193890 XR_925129 CCDS3483 Q86SH2 12539046 MGI:2180337 RGD:727972 ZAR1 607520 +HGNC:37116 ZAR1L zygote arrest 1-like protein-coding gene gene with protein product Approved 13q13.1 13q13.1 Z3CXXC7 zinc finger, 3CxxC-type 7 Zinc fingers 3CxxC-type 137 2009-06-23 2014-02-20 646799 ENSG00000189167 OTTHUMG00000016694 uc058wfs.1 NM_001136571 CCDS45023 A6NP61 18442940 MGI:3690051 RGD:1591034 ZAR1L +HGNC:26245 ZBBX zinc finger B-box domain containing protein-coding gene gene with protein product Approved 3q26.1 03q26.1 FLJ23049 2008-02-18 2016-02-12 2016-02-12 79740 ENSG00000169064 OTTHUMG00000133560 uc003fep.4 AK026702 NM_024687 "CCDS3199|CCDS56295|CCDS56296" A8MT70 12477932 MGI:2674085 RGD:1308632 ZBBX +HGNC:447 ZBED1 zinc finger BED-type containing 1 protein-coding gene gene with protein product Approved Xp22.33 and Yp11 Xp22.33 and Yp11 "TRAMP|KIAA0785|DREF|hDREF" ALTE Ac-like transposable element "Zinc fingers BED-type|Pseudoautosomal region 1" "64|715" 2000-05-11 2004-01-16 2016-02-12 2016-02-12 9189 ENSG00000214717 OTTHUMG00000021069 uc022ciu.2 AB018328 NM_004729 CCDS14118 O96006 "9872452|9887332|23533661" Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZBED1 ZBED1 300178 +HGNC:44004 ZBED1P1 zinc finger BED-type containing 1 pseudogene 1 pseudogene pseudogene Approved 4q25 04q25 2012-05-28 2016-02-12 2016-02-12 645145 ENSG00000250304 OTTHUMG00000161111 NG_008326 PGOHUM00000246025 +HGNC:20710 ZBED2 zinc finger BED-type containing 2 protein-coding gene gene with protein product Approved 3q13.13 03q13.13 MGC10796 Zinc fingers BED-type 64 2003-03-21 2016-02-12 2016-02-12 79413 ENSG00000177494 OTTHUMG00000074061 uc003dxy.4 BC003536 NM_024508 CCDS2960 Q9BTP6 23533661 RGD:9378503 ZBED2 615246 +HGNC:20711 ZBED3 zinc finger BED-type containing 3 protein-coding gene gene with protein product Approved 5q13.3 05q13.3 MGC15435 Zinc fingers BED-type 64 2003-03-21 2016-02-12 2016-10-05 84327 ENSG00000132846 OTTHUMG00000102131 uc003kev.2 BC007239 NM_032367 CCDS4036 Q96IU2 23533661 MGI:1919364 RGD:1309665 ZBED3 615250 +HGNC:44188 ZBED3-AS1 ZBED3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 5q13.3 05q13.3 ZBED3 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2015-01-23 728723 ENSG00000250802 OTTHUMG00000162473 uc063est.1 NR_024398 25482444 +HGNC:20721 ZBED4 zinc finger BED-type containing 4 protein-coding gene gene with protein product Approved 22q13.33 22q13.33 KIAA0637 Zinc fingers BED-type 64 2003-03-24 2016-02-12 2016-02-12 9889 ENSG00000100426 OTTHUMG00000150291 uc003bix.3 AB014537 NM_014838 CCDS33677 O75132 23533661 MGI:2682302 RGD:1305949 ZBED4 612552 +HGNC:30803 ZBED5 zinc finger BED-type containing 5 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 Buster1 Zinc fingers BED-type 64 2006-07-14 2016-02-12 2016-10-05 58486 ENSG00000236287 OTTHUMG00000150341 uc057zcl.1 AF205601 NM_021211 Q49AG3 "10607616|23533661" MGI:1919220 ZBED5 615251 +HGNC:48646 ZBED5-AS1 ZBED5 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 11p15.4 11p15.4 2013-05-31 2016-10-05 729013 ENSG00000247271 OTTHUMG00000165888 NR_034137 +HGNC:33273 ZBED6 zinc finger BED-type containing 6 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 Zinc fingers BED-type 64 2010-06-28 2016-02-12 2016-02-12 100381270 ENSG00000257315 OTTHUMG00000170422 uc021phs.2 NM_001174108 CCDS55673 P86452 "20016685|20375320|23533661" MGI:3828086 RGD:9238526 ZBED6 613512 +HGNC:21720 ZBED6CL ZBED6 C-terminal like protein-coding gene gene with protein product Approved 7q36.1 07q36.1 C7orf29 chromosome 7 open reading frame 29 2003-07-14 2013-05-03 2013-05-03 2016-10-05 113763 ENSG00000188707 OTTHUMG00000158328 BC011406 NM_138434 CCDS5900 Q96FA7 23533661 615252 +HGNC:30804 ZBED8 zinc finger BED-type containing 8 protein-coding gene gene with protein product Approved 5q33.3 05q33.3 Buster3 C5orf54 chromosome 5 open reading frame 54 2009-03-06 2014-05-12 2016-02-12 2016-02-12 63920 ENSG00000221886 OTTHUMG00000163554 NM_022090 CCDS34283 Q8IZ13 "10607616|23533661" RGD:1559988 615253 +HGNC:13851 ZBED9 zinc finger BED-type containing 9 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "ZFP38-L|KIAA1925|FLJ31087|Buster4" "ZNF305P2|ZNF452|SCAND3" "zinc finger protein 305 pseudogene 2|zinc finger protein 452|SCAN domain containing 3" 2003-05-20 2014-05-12 2016-02-12 2016-10-05 114821 ENSG00000232040 OTTHUMG00000016237 AB067512 NM_052923 CCDS34355 Q6R2W3 "23533661|23550032" 615254 1138 +HGNC:16176 ZBP1 Z-DNA binding protein 1 protein-coding gene gene with protein product Approved 20q13.31 20q13.31 "dJ718J7.3|DLM1|DLM-1|DAI" DNA-dependent activator of IRFs C20orf183 chromosome 20 open reading frame 183 2001-07-17 2002-07-26 2002-07-25 2014-11-18 81030 ENSG00000124256 OTTHUMG00000032824 uc002xyo.4 AJ300575 NM_030776 "CCDS13461|CCDS54477|CCDS54478" Q9H171 11842111 MGI:1927449 RGD:619956 ZBP1 606750 +HGNC:20259 ZBTB1 zinc finger and BTB domain containing 1 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 "KIAA0997|ZNF909" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-01-15 2015-07-14 22890 ENSG00000126804 OTTHUMG00000171147 uc001xhh.5 AB023214 XM_017021094 "CCDS32097|CCDS45126" Q9Y2K1 10231032 MGI:2442326 RGD:1303095 ZBTB1 616578 399 +HGNC:20868 ZBTB2 zinc finger and BTB domain containing 2 protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "KIAA1483|ZNF437|bA351K16.2" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-04-16 2015-08-26 57621 ENSG00000181472 OTTHUMG00000015834 uc003qoh.4 BC020172 NM_020861 CCDS5231 Q8N680 10819331 MGI:2685949 RGD:1306621 ZBTB2 616595 441 +HGNC:22918 ZBTB3 zinc finger and BTB domain containing 3 protein-coding gene gene with protein product Approved 11q12.3 11q12.3 FLJ23392 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-07-23 2014-11-19 79842 ENSG00000185670 OTTHUMG00000167608 uc001nuz.4 AK027045 NM_024784 CCDS8034 Q9H5J0 MGI:1922541 RGD:1561140 ZBTB3 +HGNC:23847 ZBTB4 zinc finger and BTB domain containing 4 protein-coding gene gene with protein product Approved 17p13.1 17p13.1 "KIAA1538|KAISO-L1|ZNF903" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-12-15 2016-10-05 57659 ENSG00000174282 OTTHUMG00000108137 uc002ghd.5 AB040971 NM_020899 CCDS11107 Q9P1Z0 "16354688|25499219" MGI:1922830 RGD:1307184 ZBTB4 612308 137 +HGNC:23836 ZBTB5 zinc finger and BTB domain containing 5 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 KIAA0354 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-12-15 2016-10-05 9925 ENSG00000168795 OTTHUMG00000019918 uc003zzx.4 AB002352 NM_014872 CCDS6610 O15062 9205841 MGI:1924601 RGD:1307367 ZBTB5 616590 +HGNC:16764 ZBTB6 zinc finger and BTB domain containing 6 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 ZID ZNF482 zinc finger protein 482 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-12-15 2006-04-10 2006-04-10 2016-10-05 10773 ENSG00000186130 OTTHUMG00000020628 uc004bnh.5 X82018 NM_006626 CCDS6846 Q15916 7958847 MGI:2442998 RGD:1306007 ZBTB6 605976 1222 +HGNC:18078 ZBTB7A zinc finger and BTB domain containing 7A protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "FBI-1|LRF|DKFZp547O146|pokemon|ZNF857A" "zinc finger and BTB domain containing 7A, HIV-1 inducer of short transcripts binding protein|lymphoma related factor" ZBTB7 zinc finger and BTB domain containing 7 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2004-01-16 2005-04-07 2014-11-19 51341 ENSG00000178951 OTTHUMG00000181792 uc002lzi.4 AF000561 NM_015898 CCDS12119 O95365 "9973611|9927193" MGI:1335091 RGD:620946 ZBTB7A 605878 167 +HGNC:18668 ZBTB7B zinc finger and BTB domain containing 7B protein-coding gene gene with protein product Approved 1q21.3 01q21.3 "ZBTB15|c-Krox|hcKrox|ZNF857B" zinc finger and BTB domain containing 15 ZFP67 zinc finger protein 67 homolog (mouse) "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2002-05-23 2005-04-07 2016-10-05 51043 ENSG00000160685 OTTHUMG00000037414 uc031ppr.2 AF007833 NM_015872 "CCDS1081|CCDS58030" O15156 "9370309|7937772" MGI:102755 RGD:1305963 ZBTB7B 607646 24 +HGNC:31700 ZBTB7C zinc finger and BTB domain containing 7C protein-coding gene gene with protein product Approved 18q21.1 18q21.1 ZNF857C ZBTB36 zinc finger and BTB domain containing 36 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2005-01-07 2005-04-07 2014-11-18 201501 ENSG00000184828 OTTHUMG00000180322 uc010dnw.4 Y14591 NM_001039360 CCDS32830 A1YPR0 MGI:2443302 RGD:1591841 ZBTB7C 616591 1131 +HGNC:24172 ZBTB8A zinc finger and BTB domain containing 8A protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "BOZF1|FLJ90065|ZNF916A" ZBTB8 zinc finger and BTB domain containing 8 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-12-16 2009-03-25 2009-03-25 2016-10-05 653121 ENSG00000160062 OTTHUMG00000007855 uc001bvn.4 AF548353 NM_144621 "CCDS30664|CCDS76133" Q96BR9 23329847 MGI:1920930 RGD:1308756 ZBTB8A 8 +HGNC:37057 ZBTB8B zinc finger and BTB domain containing 8B protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "RP1-27O5.1|DKFZp547H154|ZNF916B" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2009-03-25 2015-02-02 728116 ENSG00000273274 OTTHUMG00000167087 uc001bvl.5 AL442095 NM_001145720 CCDS44104 Q8NAP8 MGI:2387181 RGD:1562327 ZBTB8B 1211 +HGNC:24094 ZBTB8OS zinc finger and BTB domain containing 8 opposite strand protein-coding gene gene with protein product Approved 1p35.1 01p35.1 ARCH archease 2005-04-08 2015-01-12 339487 ENSG00000176261 OTTHUMG00000007856 uc001bvp.4 AY151084 NM_178547 "CCDS365|CCDS76134|CCDS81292" Q8IWT0 24870230 MGI:1914356 RGD:1562249 ZBTB8OS 615891 +HGNC:19043 ZBTB8OSP1 zinc finger and BTB domain containing 8 opposite strand pseudogene 1 pseudogene pseudogene Approved 4q31.3 04q31.3 2010-09-30 2014-11-19 729566 ENSG00000183432 OTTHUMG00000161446 NG_029802 PGOHUM00000250797 +HGNC:30326 ZBTB8OSP2 zinc finger and BTB domain containing 8 opposite strand pseudogene 2 pseudogene pseudogene Approved 2q37.1 02q37.1 2010-09-30 2014-11-19 729898 ENSG00000172799 OTTHUMG00000153872 NG_028934 PGOHUM00000240548 +HGNC:28323 ZBTB9 zinc finger and BTB domain containing 9 protein-coding gene gene with protein product Approved 6p21.32 06p21.32 "MGC23166|ZNF919" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2004-01-23 2016-10-05 221504 ENSG00000213588 OTTHUMG00000140180 uc003oeq.4 AK122644 NM_152735 CCDS4780 Q96C00 12477932 MGI:1918022 RGD:1303050 ZBTB9 781 +HGNC:30953 ZBTB10 zinc finger and BTB domain containing 10 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "RINZF|FLJ12752" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2004-01-23 2016-10-05 65986 ENSG00000205189 OTTHUMG00000155016 uc064nyh.1 AK022814 NM_023929 "CCDS47880|CCDS64920" Q96DT7 12477932 MGI:2139883 RGD:708377 ZBTB10 +HGNC:16740 ZBTB11 zinc finger and BTB domain containing 11 protein-coding gene gene with protein product Approved 3q12.3 03q12.3 "ZNF-U69274|ZNF913" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2004-04-15 2015-08-26 27107 ENSG00000066422 OTTHUMG00000159133 uc003dve.5 U69274 NM_014415 CCDS2943 O95625 MGI:2443876 RGD:1308275 ZBTB11 395 +HGNC:48573 ZBTB11-AS1 ZBTB11 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q12.3 03q12.3 2013-05-17 2013-05-17 100009676 ENSG00000256628 OTTHUMG00000159176 NR_024407 +HGNC:19066 ZBTB12 zinc finger and BTB domain containing 12 protein-coding gene gene with protein product Approved 6p21.33 06p21.33 "G10|NG35|D6S59E" C6orf46 chromosome 6 open reading frame 46 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2002-08-13 2004-04-16 2004-04-15 2016-10-05 221527 ENSG00000204366 OTTHUMG00000031169 uc003nyd.2 BC043609 NM_181842 CCDS4727 Q9Y330 9545376 MGI:88133 RGD:1302958 ZBTB12 +HGNC:37702 ZBTB12BP zinc finger and BTB domain containing 12B, pseudogene pseudogene pseudogene Approved 4p14 04p14 ZNF920 "ZBTB12B|ZBTB12P1" "zinc finger and BTB domain containing 12B|zinc finger and BTB domain containing 12 pseudogene 1" 2010-01-26 2015-10-30 2015-10-30 2015-10-30 100499252 ENSG00000180610 OTTHUMG00000160580 NG_023432 PGOHUM00000250704 1220 +HGNC:12860 ZBTB14 zinc finger and BTB domain containing 14 protein-coding gene gene with protein product Approved 18p11.31 18p11.31 ZNF478 ZFP161 "zinc finger protein 161 homolog (mouse)|zinc finger protein 161|ZFP161 zinc finger protein" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1996-12-20 2013-01-08 2013-01-08 2014-11-19 7541 ENSG00000198081 OTTHUMG00000131563 uc021ugn.2 D89859 NM_003409 CCDS11837 O43829 9244432 MGI:1195345 RGD:628712 602126 146 +HGNC:12930 ZBTB16 zinc finger and BTB domain containing 16 protein-coding gene gene with protein product Approved 11q23.2 11q23.2 PLZF promyelocytic leukaemia zinc finger ZNF145 zinc finger protein 145 (Kruppel-like, expressed in promyelocytic leukemia) "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1993-11-01 2004-07-16 2004-07-16 2016-10-05 7704 ENSG00000109906 OTTHUMG00000168243 uc001pop.4 Z19002 NM_006006 CCDS8367 Q05516 MGI:103222 RGD:727921 ZBTB16 176797 391986 62 +HGNC:12936 ZBTB17 zinc finger and BTB domain containing 17 protein-coding gene gene with protein product Approved 1p36.13 01p36.13 "MIZ1|pHZ-67" "ZNF151|ZNF60" "zinc finger protein 151 (pHZ-67)|zinc finger protein 60" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1994-03-16 2004-07-16 2004-07-16 2014-11-19 7709 ENSG00000116809 OTTHUMG00000009377 uc001axl.5 U20647 NM_003443 "CCDS165|CCDS55576|CCDS72712" Q13105 MGI:107410 RGD:1307143 ZBTB17 604084 4 +HGNC:13030 ZBTB18 zinc finger and BTB domain containing 18 protein-coding gene gene with protein product Approved 1q44 01q44 "C2H2-171|TAZ-1|RP58" ZNF238 zinc finger protein 238 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1998-11-19 2013-01-09 2013-01-09 2014-11-19 10472 ENSG00000179456 OTTHUMG00000040013 uc001iad.6 U38896 NM_205768 CCDS1622 Q99592 "9568537|9013868" MGI:1353609 RGD:621548 608433 370418 30 +HGNC:13503 ZBTB20 zinc finger and BTB domain containing 20 protein-coding gene gene with protein product Approved 3q13.31 03q13.31 "ODA-8S|DKFZp566F123|DPZF" ZNF288 zinc finger protein 288 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2001-06-25 2004-07-16 2004-07-16 2016-10-05 26137 ENSG00000181722 OTTHUMG00000159366 uc003ebn.5 AF139460 NM_015642 "CCDS2981|CCDS54626" Q9HC78 "10965110|11352661" MGI:1929213 RGD:1560387 ZBTB20 606025 410685 555 +HGNC:40640 ZBTB20-AS1 ZBTB20 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q13.31 03q13.31 ZBTB20 antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100131117 ENSG00000241560 OTTHUMG00000159368 uc003ebo.3 NR_038993 +HGNC:42421 ZBTB20-AS2 ZBTB20 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3q13.31 03q13.31 ZBTB20 antisense RNA 2 (non-protein coding) 2011-07-25 2012-08-15 2014-11-18 100506673 ENSG00000241295 OTTHUMG00000159363 uc062mrj.1 +HGNC:42422 ZBTB20-AS3 ZBTB20 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 3q13.31 03q13.31 ZBTB20 antisense RNA 3 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 104413890 ENSG00000239946 OTTHUMG00000159365 uc062mrl.1 NR_126422 +HGNC:42423 ZBTB20-AS4 ZBTB20 antisense RNA 4 non-coding RNA RNA, long non-coding Approved 3q13.31 03q13.31 ZBTB20 antisense RNA 4 (non-protein coding) 2011-07-25 2012-08-15 2014-11-18 100874131 ENSG00000242767 OTTHUMG00000159364 uc062mrn.1 NR_046877 +HGNC:13083 ZBTB21 zinc finger and BTB domain containing 21 protein-coding gene gene with protein product Approved 21q22.3 21q22.3 KIAA1227 ZNF295 zinc finger protein 295 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2000-03-15 2013-01-09 2013-01-09 2014-11-19 49854 ENSG00000173276 OTTHUMG00000086789 uc002zab.5 AB033053 NM_020727 "CCDS13678|CCDS42934" Q9ULJ3 MGI:1927240 RGD:1310841 616485 48 +HGNC:13085 ZBTB22 zinc finger and BTB domain containing 22 protein-coding gene gene with protein product Approved 6p21.3 06p21.3 "BING1|ZNF297A|fruitless|fru|ZBTB22A" ZNF297 zinc finger protein 297 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2000-07-25 2006-04-12 2006-04-12 2015-08-26 9278 ENSG00000236104 OTTHUMG00000031110 uc011jax.3 Z97183 NM_005453 CCDS4775 O15209 MGI:1931870 RGD:1359627 ZBTB22 611439 435 +HGNC:21143 ZBTB24 zinc finger and BTB domain containing 24 protein-coding gene gene with protein product Approved 6q21 06q21 "KIAA0441|BIF1|PATZ2" POZ (BTB) and AT hook containing zinc finger 2 ZNF450 zinc finger protein 450 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-05-20 2004-04-16 2004-04-15 2016-10-12 9841 ENSG00000112365 OTTHUMG00000015349 uc003ptl.2 AB007901 NM_014797 CCDS34509 O43167 9455477 MGI:3039618 RGD:1306951 LRG_326|http://www.lrg-sequence.org/LRG/LRG_326 ZBTB24 614064 268103 569 +HGNC:13112 ZBTB25 zinc finger and BTB domain containing 25 protein-coding gene gene with protein product Approved 14q23.3 14q23.3 KUP "ZNF46|C14orf51" "zinc finger protein 46 (KUP)|chromosome 14 open reading frame 51" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1991-07-12 2005-05-22 2005-05-22 2016-10-05 7597 ENSG00000089775 OTTHUMG00000141310 uc001xhf.4 X16576 NM_006977 "CCDS9765|CCDS76689" P24278 MGI:99197 RGD:735076 ZBTB25 194541 783 +HGNC:23383 ZBTB26 zinc finger and BTB domain containing 26 protein-coding gene gene with protein product Approved 9q33.2 09q33.2 ZNF481 zinc finger protein 481 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-11-14 2004-04-16 2004-04-15 2016-10-05 57684 ENSG00000171448 OTTHUMG00000020627 uc004bnk.4 AB046792 NM_020924 CCDS6847 Q9HCK0 MGI:2444402 RGD:1308561 ZBTB26 1221 +HGNC:16763 ZBTB32 zinc finger and BTB domain containing 32 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "TZFP|FAZF|FAXF|Rog|ZNF538" repressor of GATA "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2005-09-23 2016-10-05 27033 ENSG00000011590 OTTHUMG00000048118 uc060xgt.1 AF130255 NM_014383 CCDS12471 Q9Y2Y4 10572087 MGI:1891838 RGD:1584121 ZBTB32 605859 217 +HGNC:16682 ZBTB33 zinc finger and BTB domain containing 33 protein-coding gene gene with protein product Approved Xq24 Xq24 "ZNF-kaiso|kaiso|WUGSC:H_DJ525N14.1|KAISO|ZNF348" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2004-04-15 2016-10-05 10009 ENSG00000177485 OTTHUMG00000171159 uc004esn.2 BC042753 NM_006777 CCDS14596 Q86T24 MGI:1927290 RGD:1566309 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZBTB33 ZBTB33 300329 524 +HGNC:31446 ZBTB34 zinc finger and BTB domain containing 34 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "KIAA1993|MGC24652|ZNF918" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2004-05-27 2014-11-19 403341 ENSG00000177125 OTTHUMG00000020694 uc064vtp.1 DQ227306 NM_001099270 CCDS48023 Q8NCN2 16718364 MGI:2685195 RGD:1596130 ZBTB34 611692 683 +HGNC:28365 ZBTB37 zinc finger and BTB domain containing 37 protein-coding gene gene with protein product Approved 1q25.1 01q25.1 "MGC2629|ZNF908" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2004-08-25 2016-10-05 84614 ENSG00000185278 OTTHUMG00000037274 uc021pfb.2 AK057310 NM_032522 "CCDS1312|CCDS44278" Q5TC79 12477932 MGI:2444467 RGD:1308731 ZBTB37 584 +HGNC:26636 ZBTB38 zinc finger and BTB domain containing 38 protein-coding gene gene with protein product Approved 3q23 03q23 "FLJ35036|CIBZ|ZNF921|PPP1R171" protein phosphatase 1, regulatory subunit 171 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2005-04-12 2015-08-26 253461 ENSG00000177311 OTTHUMG00000160128 uc062olr.1 BC015444 XM_017006050 CCDS43157 Q8NAP3 "18375381|21188497|24726359" MGI:2442866 RGD:1310136 ZBTB38 612218 660 +HGNC:29014 ZBTB39 zinc finger and BTB domain containing 39 protein-coding gene gene with protein product Approved 12q13.3 12q13.3 "KIAA0352|ZNF922" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2005-05-09 2014-11-19 9880 ENSG00000166860 OTTHUMG00000171007 uc001sml.3 AB002350 NM_014830 CCDS31839 O15060 9205841 MGI:2443316 RGD:1306532 ZBTB39 498 +HGNC:29045 ZBTB40 zinc finger and BTB domain containing 40 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "KIAA0478|ZNF923" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2005-05-09 2016-10-05 9923 ENSG00000184677 OTTHUMG00000002897 uc001bft.2 AB007947 NM_014870 "CCDS224|CCDS81278" Q9NUA8 MGI:2682254 RGD:1309866 ZBTB40 612106 5 +HGNC:41493 ZBTB40-IT1 ZBTB40 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 1p36.12 01p36.12 ZBTB40 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874345 ENSG00000237200 OTTHUMG00000040025 uc057ddu.1 +HGNC:24819 ZBTB41 zinc finger and BTB domain containing 41 protein-coding gene gene with protein product Approved 1q31.3 01q31.3 "FRBZ1|FLJ36199|DKFZp686C06120|ZNF924" "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2005-05-12 2015-07-14 360023 ENSG00000177888 OTTHUMG00000036275 uc001gtx.2 NM_194314 CCDS30960 Q5SVQ8 MGI:2444487 RGD:1560834 ZBTB41 26 +HGNC:32550 ZBTB42 zinc finger and BTB domain containing 42 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 ZNF925 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2006-03-15 2015-08-26 100128927 ENSG00000179627 OTTHUMG00000170790 uc021sem.3 AX721091 XM_017020911 CCDS45174 B2RXF5 MGI:3644133 RGD:1582758 ZBTB42 613915 591 +HGNC:17908 ZBTB43 zinc finger and BTB domain containing 43 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 "KIAA0414|ZNF-X|FLJ22470|ZBTB22B" ZNF297B zinc finger protein 297B "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2002-01-29 2006-04-12 2006-04-12 2015-08-26 23099 ENSG00000169155 OTTHUMG00000020693 uc010mxf.4 AF049907 NM_001135776 CCDS6867 O43298 MGI:1919084 RGD:1310287 ZBTB43 509 +HGNC:25001 ZBTB44 zinc finger and BTB domain containing 44 protein-coding gene gene with protein product Approved 11q24.3 11q24.3 "HSPC063|ZNF851" BTBD15 BTB (POZ) domain containing 15 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2005-03-13 2006-09-19 2006-09-19 2014-11-19 29068 ENSG00000196323 OTTHUMG00000165769 uc001qgb.5 AK024659 NM_014155 "CCDS44776|CCDS73414|CCDS73415" Q8NCP5 11042152 MGI:1925123 RGD:1308984 ZBTB44 575 +HGNC:23715 ZBTB45 zinc finger and BTB domain containing 45 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ14486 ZNF499 zinc finger protein 499 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-12-03 2006-09-19 2006-09-19 2014-11-19 84878 ENSG00000119574 OTTHUMG00000183545 uc002qtf.4 AK027392 NM_032792 CCDS12984 Q96K62 MGI:2685003 RGD:1310920 ZBTB45 337 +HGNC:49227 ZBTB45P1 zinc finger and BTB domain containing 45 pseudogene 1 pseudogene pseudogene Approved 2q13 02q13 2013-10-10 2013-10-10 645129 ENSG00000225108 OTTHUMG00000154978 NG_011684 PGOHUM00000240247 +HGNC:49228 ZBTB45P2 zinc finger and BTB domain containing 45 pseudogene 2 pseudogene pseudogene Approved 2q13 02q13 2013-10-10 2013-10-10 729248 ENSG00000226065 OTTHUMG00000154955 NG_021578 PGOHUM00000240856 +HGNC:16094 ZBTB46 zinc finger and BTB domain containing 46 protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "FLJ13502|RINZF|BZEL" BTB-ZF protein expressed in effector lymphocytes "ZNF340|BTBD4" BTB (POZ) domain containing 4 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2001-07-17 2006-09-19 2006-09-19 2014-11-19 140685 ENSG00000130584 OTTHUMG00000033001 uc061ypq.1 AK131482 NM_025224 CCDS13538 Q86UZ6 MGI:1919397 RGD:1307408 ZBTB46 614639 1243 +HGNC:40753 ZBTB46-AS1 ZBTB46 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.33 20q13.33 2014-06-13 2014-11-19 101928604 ENSG00000231208 OTTHUMG00000032990 NR_110081 +HGNC:26955 ZBTB47 zinc finger and BTB domain containing 47 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 "KIAA1190|DKFZp434N0615" ZNF651 zinc finger protein 651 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2005-01-07 2006-09-19 2006-09-19 2016-04-25 92999 ENSG00000114853 OTTHUMG00000156207 uc003clu.3 AB033016 NM_145166 CCDS46805 Q9UFB7 10574461 MGI:2670992 RGD:1562434 ZBTB47 385 +HGNC:4930 ZBTB48 zinc finger and BTB domain containing 48 protein-coding gene gene with protein product Approved 1p36.31 01p36.31 ZNF855 HKR3 GLI-Kruppel family member HKR3 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1989-05-29 2006-09-20 2006-09-20 2016-10-05 3104 ENSG00000204859 OTTHUMG00000001438 uc001anx.5 BC013573 NM_005341 CCDS84 P10074 "2850480|8661141" MGI:2140248 RGD:1311581 ZBTB48 165270 2 +HGNC:19883 ZBTB49 zinc finger and BTB domain containing 49 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 FLJ38559 ZNF509 zinc finger protein 509 "Zinc fingers C2H2-type|BTB domain containing" "28|861" 2003-12-15 2010-01-26 2010-01-26 2016-10-05 166793 ENSG00000168826 OTTHUMG00000090325 uc003ghu.4 AK095878 NM_145291 CCDS3375 Q6ZSB9 25245946 MGI:1922329 RGD:1306733 ZBTB49 616238 408 +HGNC:24277 ZC2HC1A zinc finger C2HC-type containing 1A protein-coding gene gene with protein product Approved 8q21.13 08q21.13 CGI-62 "C8orf70|FAM164A" "chromosome 8 open reading frame 70|family with sequence similarity 164, member A" Zinc fingers C2HC-type 66 2005-09-22 2012-02-03 2016-02-12 2016-10-05 51101 ENSG00000104427 OTTHUMG00000164619 uc003ybd.4 NM_016010 CCDS6223 Q96GY0 10810093 MGI:1914556 RGD:1311970 +HGNC:21174 ZC2HC1B zinc finger C2HC-type containing 1B protein-coding gene gene with protein product Approved 6q24.2 06q24.2 dJ468K18.5 "FAM164B|C6orf94" "family with sequence similarity 164, member B|chromosome 6 open reading frame 94" Zinc fingers C2HC-type 66 2003-11-26 2012-02-03 2016-02-12 2016-02-12 153918 ENSG00000118491 OTTHUMG00000015734 uc010khk.4 BC146950 NM_001013623 CCDS47495 Q5TFG8 MGI:1922372 RGD:2319701 ZC2HC1B +HGNC:20354 ZC2HC1C zinc finger C2HC-type containing 1C protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "C14orf140|FAM164C" "chromosome 14 open reading frame 140|family with sequence similarity 164, member C" Zinc fingers C2HC-type 66 2003-01-28 2012-02-03 2016-02-12 2016-02-12 79696 ENSG00000119703 OTTHUMG00000167439 uc001xrh.5 AK026746 NM_001042430 "CCDS41972|CCDS45138|CCDS81829" Q53FD0 MGI:1919600 RGD:1307122 +HGNC:28972 ZC3H3 zinc finger CCCH-type containing 3 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 KIAA0150 ZC3HDC3 zinc finger CCCH-type domain containing 3 Zinc fingers CCCH-type 73 2004-01-30 2005-06-02 2005-06-02 2014-11-19 23144 ENSG00000014164 OTTHUMG00000165127 uc003yyd.3 D63484 NM_015117 CCDS6402 Q8IXZ2 8590280 MGI:2663721 RGD:1307276 ZC3H3 +HGNC:17808 ZC3H4 zinc finger CCCH-type containing 4 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 KIAA1064 C19orf7 chromosome 19 open reading frame 7 Zinc fingers CCCH-type 73 2001-12-14 2007-10-18 2007-10-18 2015-08-24 23211 ENSG00000130749 OTTHUMG00000183442 uc002pga.5 AB028987 XM_006723113 CCDS42582 Q9UPT8 MGI:2682314 RGD:1596943 ZC3H4 +HGNC:24762 ZC3H6 zinc finger CCCH-type containing 6 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 "FLJ41410|FLJ45877|KIAA2035" ZC3HDC6 zinc finger CCCH-type domain containing 6 Zinc fingers CCCH-type 73 2004-03-19 2005-06-02 2005-06-02 2016-10-05 376940 ENSG00000188177 OTTHUMG00000153286 uc002thq.2 AK123404 NM_198581 CCDS46393 P61129 MGI:1926001 RGD:1311061 ZC3H6 +HGNC:30959 ZC3H7A zinc finger CCCH-type containing 7A protein-coding gene gene with protein product Approved 16p13.13 16p13.13 "HSPC055|FLJ20318" "ZC3HDC7|ZC3H7" "zinc finger CCCH-type domain containing 7|zinc finger CCCH-type containing 7" "Zinc fingers CCCH-type|Tetratricopeptide repeat domain containing" "73|769" 2004-04-22 2005-06-08 2005-06-02 2016-10-05 29066 ENSG00000122299 OTTHUMG00000129825 uc002dbl.4 AF161540 NM_014153 CCDS10550 Q8IWR0 11042152 MGI:2445044 RGD:1311225 ZC3H7A +HGNC:30869 ZC3H7B zinc finger CCCH-type containing 7B protein-coding gene gene with protein product Approved 22q13.2 22q13.2 "RoXaN|FLJ13787|DKFZp434K0920|KIAA1031" "Zinc fingers CCCH-type|Tetratricopeptide repeat domain containing" "73|769" 2005-06-08 2005-08-09 2014-11-19 23264 ENSG00000100403 OTTHUMG00000150969 uc003azw.5 NM_017590 CCDS14013 Q9UGR2 "10470851|11230166" MGI:1328310 RGD:1307064 ZC3H7B +HGNC:30941 ZC3H8 zinc finger CCCH-type containing 8 protein-coding gene gene with protein product Approved 2q14.1 02q14.1 Fliz1 ZC3HDC8 zinc finger CCCH-type domain containing 8 Zinc fingers CCCH-type 73 2004-03-19 2005-06-02 2005-06-02 2016-10-05 84524 ENSG00000144161 OTTHUMG00000153270 uc061mze.1 AF334161 NM_032494 CCDS46392 Q8N5P1 12477932 MGI:1930128 RGD:1310458 ZC3H8 +HGNC:25893 ZC3H10 zinc finger CCCH-type containing 10 protein-coding gene gene with protein product Approved 12q13.2 12q13.2 FLJ14451 ZC3HDC10 zinc finger CCCH-type domain containing 10 Zinc fingers CCCH-type 73 2005-05-06 2005-06-02 2005-06-02 2015-01-12 84872 ENSG00000135482 OTTHUMG00000170184 uc001sjp.2 BC018708 NM_032786 CCDS8903 Q96K80 18814840 MGI:2143670 RGD:1587846 ZC3H10 +HGNC:29093 ZC3H11A zinc finger CCCH-type containing 11A protein-coding gene gene with protein product Approved 1q32.1 01q32.1 KIAA0663 ZC3HDC11A zinc finger CCCH-type domain containing 11A Zinc fingers CCCH-type 73 2005-05-06 2005-06-02 2005-06-02 2014-11-19 9877 ENSG00000058673 OTTHUMG00000035909 uc001had.4 NM_014827 CCDS30978 O75152 9734811 MGI:1917829 RGD:1308290 ZC3H11A 613513 +HGNC:25659 ZC3H11B zinc finger CCCH-type containing 11B pseudogene pseudogene pseudogene Approved 1q41 01q41 ZC3HDC11B zinc finger CCCH-type containing 11B Zinc fingers CCCH-type 73 2005-05-06 2005-06-02 2007-08-09 2014-11-19 643136 ENSG00000215817 OTTHUMG00000037436 NG_007367 +HGNC:26259 ZC3H12A zinc finger CCCH-type containing 12A protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "FLJ23231|MCPIP1" MCP induced protein 1 Zinc fingers CCCH-type 73 2005-06-03 2014-11-19 80149 ENSG00000163874 OTTHUMG00000004221 uc001cbb.5 NM_025079 CCDS417 Q5D1E8 "18178554|22055188" MGI:2385891 RGD:1306776 ZC3H12A 610562 +HGNC:17407 ZC3H12B zinc finger CCCH-type containing 12B protein-coding gene gene with protein product Approved Xq11.2-q12 Xq11.2-q12 MCPIP2 MCP induced protein 2 CXorf32 chromosome X open reading frame 32 Zinc fingers CCCH-type 73 2004-08-16 2005-06-14 2005-06-14 2016-10-11 340554 ENSG00000102053 OTTHUMG00000021719 uc010nko.3 BX647241 XM_293334 CCDS48131 Q5HYM0 18178554 MGI:2442133 RGD:1560891 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZC3H12B ZC3H12B 300889 +HGNC:29362 ZC3H12C zinc finger CCCH-type containing 12C protein-coding gene gene with protein product Approved 11q22.3 11q22.3 "KIAA1726|MCPIP3" MCP induced protein 3 Zinc fingers CCCH-type 73 2005-06-14 2012-07-05 85463 ENSG00000149289 OTTHUMG00000166572 uc010rwd.3 NM_033390 CCDS44727 Q9C0D7 "11214970|18178554" MGI:3026959 RGD:1565078 ZC3H12C 615001 +HGNC:21175 ZC3H12D zinc finger CCCH-type containing 12D protein-coding gene gene with protein product Approved 6q25.1 06q25.1 "dJ281H8.1|MCPIP4" MCP induced protein 4 C6orf95 chromosome 6 open reading frame 95 Zinc fingers CCCH-type 73 2003-11-26 2005-06-30 2005-06-30 2015-08-24 340152 ENSG00000178199 OTTHUMG00000015786 uc010kid.4 NM_207360 CCDS47500 A2A288 18178554 MGI:3045313 RGD:1597152 ZC3H12D 611106 +HGNC:20368 ZC3H13 zinc finger CCCH-type containing 13 protein-coding gene gene with protein product Approved 13q14.13 13q14.13 DKFZp434D1812 KIAA0853 KIAA0853 Zinc fingers CCCH-type 73 2003-11-21 2006-05-15 2006-05-15 2016-10-05 23091 ENSG00000123200 OTTHUMG00000016863 uc001vas.3 AB020660 NM_015070 "CCDS9400|CCDS81766" Q5T200 10048485 MGI:1914552 RGD:1307729 ZC3H13 616453 +HGNC:20509 ZC3H14 zinc finger CCCH-type containing 14 protein-coding gene gene with protein product Approved 14q31.3 14q31.3 "FLJ11806|UKp68|NY-REN-37" Zinc fingers CCCH-type 73 2006-05-15 2014-11-19 79882 ENSG00000100722 OTTHUMG00000170803 uc001xww.4 AF155107 NM_024824 "CCDS32133|CCDS32134|CCDS32135|CCDS32136|CCDS55938" Q6PJT7 10508479 MGI:1919824 RGD:621850 ZC3H14 613279 285406 +HGNC:29528 ZC3H15 zinc finger CCCH-type containing 15 protein-coding gene gene with protein product Approved 2q32.1 02q32.1 LEREPO4 likely ortholog of mouse immediate early response, erythropoietin 4 Zinc fingers CCCH-type 73 2006-11-06 2014-11-19 55854 ENSG00000065548 OTTHUMG00000154251 uc002upo.4 NM_018471 CCDS42791 Q8WU90 10880228 MGI:1919747 RGD:1359234 ZC3H15 +HGNC:25091 ZC3H18 zinc finger CCCH-type containing 18 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 NHN1 Zinc fingers CCCH-type 73 2007-11-13 2015-01-28 124245 ENSG00000158545 OTTHUMG00000137679 uc002fky.4 BC001584 NM_144604 "CCDS10967|CCDS73924" Q86VM9 17579712 MGI:1923264 RGD:1303257 ZC3H18 +HGNC:33799 ZC3H18-AS1 ZC3H18 antisense RNA 1 (head to head) other unknown Approved 16q24.2 16q24.2 FLJ45530 "C16orf85|LINC00859" "chromosome 16 open reading frame 85|long intergenic non-protein coding RNA 859" 2007-12-14 2013-10-15 2013-10-15 2014-11-19 400555 AK127438 XR_933880 +HGNC:23721 ZC3HAV1 zinc finger CCCH-type containing, antiviral 1 protein-coding gene gene with protein product Approved 7q34 07q34 "ZAP|FLB6421|FLJ13288|MGC48898|ZC3HDC2|ZC3H2|PARP13" "zinc finger antiviral protein| CCCH-type zinc finger antiviral protein" "Zinc fingers CCCH-type|Poly(ADP-ribose) polymerases" "73|684" 2003-12-11 2016-02-12 2016-02-12 56829 ENSG00000105939 OTTHUMG00000157471 uc003vun.4 BX571742 NM_020119 "CCDS5851|CCDS55171" Q7Z2W4 "12215647|12851707|25635049" MGI:1926031 RGD:628694 ZC3HAV1 607312 +HGNC:22423 ZC3HAV1L zinc finger CCCH-type containing, antiviral 1 like protein-coding gene gene with protein product Approved 7q34 07q34 MGC14289 C7orf39 chromosome 7 open reading frame 39 2006-07-03 2006-07-03 2016-02-12 2016-02-12 92092 ENSG00000146858 OTTHUMG00000157229 uc003vum.1 BC008842 NM_080660 CCDS5850 Q96H79 MGI:2443387 RGD:1309236 ZC3HAV1L +HGNC:29913 ZC3HC1 zinc finger C3HC-type containing 1 protein-coding gene gene with protein product Approved 7q32.2 07q32.2 NIPA nuclear interaction partner of ALK Zinc fingers 26 2004-11-19 2016-02-12 2016-02-12 51530 ENSG00000091732 OTTHUMG00000157648 uc003vpi.4 AF151050 NM_016478 "CCDS34753|CCDS64767|CCDS75659" Q86WB0 11042152 MGI:1916023 RGD:1561099 ZC3HC1 +HGNC:24931 ZC4H2 zinc finger C4H2-type containing protein-coding gene gene with protein product Approved Xq11.2 Xq11.2 HCA127 "KIAA1166|WWS" "KIAA1166|Wieacker-Wolff syndrome|zinc finger, C4H2 domain containing" Zinc fingers 26 2004-08-09 2008-10-01 2016-02-10 2016-10-05 55906 ENSG00000126970 OTTHUMG00000021712 uc004dvu.4 AF270491 NM_018684 "CCDS14380|CCDS55431|CCDS55432" Q9NQZ6 "10574461|12097419|23623388" MGI:2679294 RGD:1561708 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZC4H2 ZC4H2 300897 353728 +HGNC:22916 ZCCHC2 zinc finger CCHC-type containing 2 protein-coding gene gene with protein product Approved 18q21.33 18q21.33 "FLJ20281|KIAA1744|FLJ20222" C18orf49 chromosome 18 open reading frame 49 Zinc fingers CCHC-type 74 2003-07-23 2016-02-12 2016-02-12 54877 ENSG00000141664 OTTHUMG00000180165 uc002lip.5 AB051531 NM_017742 CCDS45880 Q9C0B9 11214970 MGI:2444114 RGD:1310626 ZCCHC2 +HGNC:16230 ZCCHC3 zinc finger CCHC-type containing 3 protein-coding gene gene with protein product Approved 20p13 20p13 dJ1103G7.7 C20orf99 chromosome 20 open reading frame 99 Zinc fingers CCHC-type 74 2001-07-17 2004-07-14 2016-02-12 2016-02-12 85364 ENSG00000247315 OTTHUMG00000188280 uc032oxz.2 AL034548 NM_033089 CCDS42844 Q9NUD5 MGI:1915167 RGD:1585203 ZCCHC3 +HGNC:22917 ZCCHC4 zinc finger CCHC-type containing 4 protein-coding gene gene with protein product Approved 4p15.2 04p15.2 "HSPC052|FLJ23024|ZGRF4" zinc finger, GRF-type containing 4 "Zinc fingers CCHC-type|Zinc fingers GRF-type" "74|135" 2003-08-14 2016-02-12 2016-10-05 29063 ENSG00000168228 OTTHUMG00000160563 uc003grl.5 AF161537 XR_925324 CCDS43218 Q9H5U6 11042152 MGI:1926046 RGD:1311414 ZCCHC4 611792 +HGNC:22997 ZCCHC5 zinc finger CCHC-type containing 5 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "FLJ38865|Mar3|Mart3|ZHC5" Zinc fingers CCHC-type 74 2003-08-14 2016-02-12 2016-10-05 203430 ENSG00000179300 OTTHUMG00000021892 uc004edc.1 AK096184 NM_152694 CCDS14440 Q8N8U3 "15716091|16093683" MGI:2685221 RGD:1564805 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZCCHC5 ZCCHC5 +HGNC:25817 ZCCHC6 zinc finger CCHC-type containing 6 protein-coding gene gene with protein product Approved 9q21.33 09q21.33 "KIAA1711|FLJ13409|PAPD6|TUT7" TUTase7 "Zinc fingers CCHC-type|Non-canonical poly(A) polymerases" "74|1318" 2004-01-05 2016-02-12 2016-10-05 79670 ENSG00000083223 OTTHUMG00000020137 uc004aoq.4 AL832026 NM_024617 "CCDS35057|CCDS55323|CCDS83383" Q5VYS8 11214970 MGI:2387179 RGD:1586015 ZCCHC6 613467 +HGNC:26209 ZCCHC7 zinc finger CCHC-type containing 7 protein-coding gene gene with protein product Approved 9p13.2 09p13.2 "FLJ22611|AIR1" Zinc fingers CCHC-type 74 2004-02-09 2016-02-12 2016-10-05 84186 ENSG00000147905 OTTHUMG00000019915 uc003zzq.4 AK026264 NM_032226 CCDS6608 Q8N3Z6 MGI:2442912 RGD:1310467 ZCCHC7 +HGNC:25265 ZCCHC8 zinc finger CCHC-type containing 8 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 DKFZp434E2220 "Zinc fingers CCHC-type|Nuclear exosome targeting complex" "74|1316" 2004-02-17 2016-02-12 2016-02-12 55596 ENSG00000033030 OTTHUMG00000168878 uc284ngs.1 BC017704 NM_017612 Q6NZY4 "16263084|21855801" MGI:1917900 RGD:1309774 ZCCHC8 616381 +HGNC:25424 ZCCHC9 zinc finger CCHC-type containing 9 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "DKFZp761J139|PPP1R41" protein phosphatase 1, regulatory subunit 41 "Zinc fingers CCHC-type|Protein phosphatase 1 regulatory subunits" "74|694" 2004-02-17 2016-02-12 2016-02-12 84240 ENSG00000131732 OTTHUMG00000119014 uc063ezn.1 BC014841 NM_032280 CCDS4054 Q8N567 18721783 MGI:1916335 RGD:1307450 ZCCHC9 +HGNC:25954 ZCCHC10 zinc finger CCHC-type containing 10 protein-coding gene gene with protein product Approved 5q31.1 05q31.1 FLJ20094 Zinc fingers CCHC-type 74 2004-02-17 2016-02-12 2016-02-12 54819 ENSG00000155329 OTTHUMG00000129013 uc003kyg.4 BC005211 NM_017665 "CCDS4165|CCDS75300|CCDS75301|CCDS75302|CCDS78059|CCDS78060" Q8TBK6 12477932 MGI:1196228 RGD:1308149 ZCCHC10 +HGNC:28981 ZCCHC11 zinc finger CCHC-type containing 11 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "KIAA0191|PAPD3|TUT4" TUTase4 "Zinc fingers CCHC-type|Non-canonical poly(A) polymerases" "74|1318" 2004-04-07 2016-02-12 2016-02-12 23318 ENSG00000134744 OTTHUMG00000008200 uc001cty.3 D83776 XM_038288 "CCDS30715|CCDS30716" Q5TAX3 "8724849|12239557" MGI:2445126 RGD:1310138 ZCCHC11 613692 +HGNC:27273 ZCCHC12 zinc finger CCHC-type containing 12 protein-coding gene gene with protein product Approved Xq24 Xq24 "FLJ16123|SIZN|SIZN1|PNMA7A" paraneoplastic Ma antigen family member 7A "Zinc fingers CCHC-type|Paraneoplastic Ma antigens" "74|671" 2004-07-14 2016-02-12 2016-02-12 170261 ENSG00000174460 OTTHUMG00000022261 uc004equ.4 AK122676 NM_173798 CCDS14574 Q6PEW1 "21739307|19578717" MGI:1919943 RGD:1359439 ZCCHC12 300701 +HGNC:31749 ZCCHC13 zinc finger CCHC-type containing 13 protein-coding gene gene with protein product Approved Xq13.2 Xq13.2 "4930513O09RIK|Cnbp2|ZNF9L" Zinc fingers CCHC-type 74 2004-08-19 2016-02-12 2016-02-12 389874 ENSG00000187969 OTTHUMG00000021851 uc004ebs.5 BC021176 NM_203303 CCDS14425 Q8WW36 MGI:1922314 RGD:1589760 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZCCHC13 ZCCHC13 +HGNC:24134 ZCCHC14 zinc finger CCHC-type containing 14 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 "BDG29|MGC14139" "Zinc fingers CCHC-type|Sterile alpha motif domain containing" "74|760" 2004-07-14 2016-02-12 2016-02-12 23174 ENSG00000140948 OTTHUMG00000137655 uc002fjz.2 AB011151 NM_015144 CCDS10961 Q8WYQ9 9628581 MGI:2159407 RGD:1309494 ZCCHC14 +HGNC:25214 ZCCHC16 zinc finger CCHC-type containing 16 protein-coding gene gene with protein product Approved Xq23 Xq23 "Mart4|Mar4|FLJ46608" Zinc fingers CCHC-type 74 2005-05-31 2016-02-12 2016-02-12 340595 ENSG00000187823 OTTHUMG00000159706 uc065atq.1 AK128465 NM_001004308 CCDS35369 Q6ZR62 "15716091|16093683" MGI:3588192 RGD:1588188 ZCCHC16 +HGNC:30246 ZCCHC17 zinc finger CCHC-type containing 17 protein-coding gene gene with protein product Approved 1p35.2 01p35.2 "PS1D|HSPC251|pNO40" Zinc fingers CCHC-type 74 2005-12-01 2016-02-12 2016-02-12 51538 ENSG00000121766 OTTHUMG00000003791 uc001bsp.3 AF151085 NM_016505 "CCDS341|CCDS60061|CCDS72741|CCDS72742|CCDS72743|CCDS72744|CCDS60062" Q9NP64 "12202495|12893261" MGI:1919955 RGD:1565267 ZCCHC17 +HGNC:32459 ZCCHC18 zinc finger CCHC-type containing 18 protein-coding gene gene with protein product Approved Xq22.2 Xq22.2 "SIZN2|PNMA7B" paraneoplastic Ma antigen family member 7B zinc finger, CCHC domain containing 12 pseudogene 1 "Zinc fingers CCHC-type|Paraneoplastic Ma antigens" "74|671" 2008-03-06 2016-02-12 2016-02-12 644353 ENSG00000166707 OTTHUMG00000022123 uc011msh.4 AF086548 NM_001143978 CCDS65304 P0CG32 MGI:1914245 +HGNC:32963 ZCCHC23 zinc finger CCHC-type containing 23 protein-coding gene gene with protein product Approved 4q25 04q25 FLJ45231 Zinc fingers CCHC-type 74 2006-07-14 2016-02-12 2016-02-12 645078 NM_001039778 Q6ZST2 +HGNC:26911 ZCCHC24 zinc finger CCHC-type containing 24 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "FLJ90798|Z3CXXC8" zinc finger, 3CxxC-type 8 C10orf56 chromosome 10 open reading frame 56 "Zinc fingers CCHC-type|Zinc fingers 3CxxC-type" "74|137" 2004-05-27 2008-06-23 2016-02-12 2016-02-12 219654 ENSG00000165424 OTTHUMG00000018561 uc001kak.4 AK075279 NM_153367 CCDS7359 Q8N2G6 12477932 MGI:1919168 RGD:1306164 ZCCHC24 +HGNC:29620 ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 protein-coding gene gene with protein product Approved 12q12 12q12 "MADP-1|MADP1|RBM36|ZCCHC19|SNRNP31" U11/U12 snRNP 31K "Zinc fingers CCHC-type|RNA binding motif containing" "74|725" 2006-01-25 2016-02-12 2016-02-12 85437 ENSG00000139168 OTTHUMG00000169382 uc001rmz.4 BC022543 NM_033114 CCDS8740 Q8TBF4 "15146077|16959469" MGI:1914447 RGD:1309851 ZCRB1 610750 +HGNC:23486 ZCWPW1 zinc finger CW-type and PWWP domain containing 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "FLJ10057|DKFZp434N0510|ZCW1" zinc finger, CW-type with PWWP domain 1 "Zinc fingers CW-type|PWWP domain containing" "96|1147" 2003-11-24 2016-02-12 2016-02-12 55063 ENSG00000078487 OTTHUMG00000159537 uc003uut.5 AK000919 NM_017984 "CCDS43623|CCDS59067" Q9H0M4 "11230166|14607086|20826339" MGI:2685899 RGD:6497217 ZCWPW1 +HGNC:23574 ZCWPW2 zinc finger CW-type and PWWP domain containing 2 protein-coding gene gene with protein product Approved 3p24.1 03p24.1 ZCW2 zinc finger, CW type with PWWP domain 2 "Zinc fingers CW-type|PWWP domain containing" "96|1147" 2004-11-03 2016-02-12 2016-10-05 152098 ENSG00000206559 OTTHUMG00000155705 uc003ceh.4 BC065764 XM_087384 CCDS33723 Q504Y3 14607086 MGI:1921888 RGD:1596709 ZCWPW2 +HGNC:29313 ZDBF2 zinc finger DBF-type containing 2 protein-coding gene gene with protein product Approved 2q33.3 02q33.3 "FLJ45338|KIAA1571" Zinc fingers DBF-type 75 2007-03-27 2016-02-12 2016-10-12 57683 ENSG00000204186 OTTHUMG00000154648 uc002vbp.4 AB046791 NM_020923 "CCDS46501|CCDS74637" Q9HCK1 10997877 MGI:1921134 RGD:1560005 LRG_1065|http://www.lrg-sequence.org/LRG/LRG_1065 ZDBF2 617059 +HGNC:17916 ZDHHC1 zinc finger DHHC-type containing 1 protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "HSU90653|ZNF377" C16orf1 chromosome 16 open reading frame 1 Zinc fingers DHHC-type 76 2002-04-04 2016-02-12 2016-02-12 29800 ENSG00000159714 OTTHUMG00000137522 uc010vjm.3 U90653 NM_013304 CCDS10836 Q8WTX9 10395086 MGI:1918046 RGD:1589775 ZDHHC1 +HGNC:18469 ZDHHC2 zinc finger DHHC-type containing 2 protein-coding gene gene with protein product Approved 8p22 08p22 ZNF372 Zinc fingers DHHC-type 76 2002-04-04 2016-02-12 2016-02-12 51201 ENSG00000104219 OTTHUMG00000163860 uc003wxe.4 AB023584 NM_016353 CCDS47810 Q9UIJ5 10918388 MGI:1923452 RGD:628681 ZDHHC2 +HGNC:18470 ZDHHC3 zinc finger DHHC-type containing 3 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "ZNF373|GODZ" golgi-specific DHHC Zinc Finger Protein Zinc fingers DHHC-type 76 2002-04-04 2016-02-15 2016-02-15 51304 ENSG00000163812 OTTHUMG00000133093 uc003cog.4 AF247703 NM_016598 "CCDS2724|CCDS46811" Q9NYG2 19955568 MGI:1926134 RGD:1309041 ZDHHC3 617150 +HGNC:18471 ZDHHC4 zinc finger DHHC-type containing 4 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "FLJ10479|ZNF374" Zinc fingers DHHC-type 76 2002-04-04 2016-02-15 2016-02-15 55146 ENSG00000136247 OTTHUMG00000023579 uc064bil.1 AF201931 NM_018106 CCDS5352 Q9NPG8 MGI:1920131 RGD:1308389 ZDHHC4 +HGNC:39443 ZDHHC4P1 zinc finger DHHC-type containing 4 pseudogene 1 pseudogene pseudogene Approved 13q14.11 13q14.11 2011-01-11 2016-02-15 2016-02-15 100420920 ENSG00000238025 OTTHUMG00000016812 NG_024919 PGOHUM00000248576 +HGNC:18472 ZDHHC5 zinc finger DHHC-type containing 5 protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "KIAA1748|ZNF375" Zinc fingers DHHC-type 76 2002-04-04 2016-02-15 2016-10-05 25921 ENSG00000156599 OTTHUMG00000167198 uc001nkx.2 AB051535 NM_015457 CCDS7965 Q9C0B5 11214970 MGI:1923573 RGD:1589737 ZDHHC5 614586 +HGNC:19160 ZDHHC6 zinc finger DHHC-type containing 6 protein-coding gene gene with protein product Approved 10q25.2 10q25.2 "ZNF376|FLJ21952" Zinc fingers DHHC-type 76 2002-08-28 2016-02-15 2016-10-05 64429 ENSG00000023041 OTTHUMG00000019062 uc001kzv.3 AK025605 NM_022494 "CCDS7574|CCDS76335" Q9H6R6 MGI:1914230 RGD:1304657 ZDHHC6 +HGNC:18459 ZDHHC7 zinc finger DHHC-type containing 7 protein-coding gene gene with protein product Approved 16q24.1 16q24.1 "FLJ10792|ZNF370|FLJ20279|SERZ-B|SERZ1" Sertoli cell gene with zinc finger domain-β Zinc fingers DHHC-type 76 2002-04-04 2016-02-15 2016-10-05 55625 ENSG00000153786 OTTHUMG00000137645 uc002fiq.3 AK000286 NM_017740 "CCDS10950|CCDS45538" Q9NXF8 MGI:2142662 RGD:620205 ZDHHC7 614604 +HGNC:18474 ZDHHC8 zinc finger DHHC-type containing 8 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "ZNF378|KIAA1292" Zinc fingers DHHC-type 76 2002-04-05 2003-02-28 2016-02-15 2016-02-15 29801 ENSG00000099904 OTTHUMG00000150499 uc002zrq.4 AB033118 NM_013373 "CCDS13776|CCDS54502" Q9ULC8 "10574462|15184899" MGI:1338012 RGD:1308875 ZDHHC8 608784 +HGNC:26461 ZDHHC8P1 zinc finger DHHC-type containing 8 pseudogene 1 pseudogene pseudogene Approved 22q11.23 22q11.23 FLJ31568 ZDHHC8P zinc finger, DHHC-type containing 8 pseudogene 2008-02-21 2010-02-25 2016-02-15 2016-02-15 150244 ENSG00000133519 OTTHUMG00000150650 NR_003950 PGOHUM00000246279 +HGNC:18475 ZDHHC9 zinc finger DHHC-type containing 9 protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "ZNF379|CGI-89|ZNF380" "ZDHHC10|CXorf11" "zinc finger, DHHC-type containing 10|chromosome X open reading frame 11" Zinc fingers DHHC-type 76 2002-04-05 2016-02-15 2016-02-15 51114 ENSG00000188706 OTTHUMG00000022375 uc004euw.4 AF151847 NM_016032 CCDS35395 Q9Y397 10810093 MGI:2444393 RGD:1561389 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZDHHC9 ZDHHC9 300646 159313 +HGNC:19158 ZDHHC11 zinc finger DHHC-type containing 11 protein-coding gene gene with protein product Approved 5p15.33 05p15.33 "ZNF399|FLJ13153" Zinc fingers DHHC-type 76 2002-08-28 2016-02-15 2016-10-05 79844 ENSG00000188818 OTTHUMG00000090319 uc011cma.2 AK023215 NM_024786 CCDS3857 Q9H8X9 MGI:1918414 RGD:1564281 ZDHHC11 +HGNC:32962 ZDHHC11B zinc finger DHHC-type containing 11B protein-coding gene gene with protein product Approved 5p15.33 05p15.33 Zinc fingers DHHC-type 76 2006-07-14 2016-02-15 2016-02-15 653082 ENSG00000206077 OTTHUMG00000162148 uc063bxb.1 XM_926053 P0C7U3 MGI:1918414 ZDHHC11B +HGNC:19159 ZDHHC12 zinc finger DHHC-type containing 12 protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "ZNF400|FLJ14524" Zinc fingers DHHC-type 76 2002-08-28 2016-02-15 2016-02-15 84885 ENSG00000160446 OTTHUMG00000020756 uc004bvy.4 AK027430 NM_032799 CCDS6909 Q96GR4 MGI:1913470 RGD:1306593 ZDHHC12 +HGNC:18413 ZDHHC13 zinc finger DHHC-type containing 13 protein-coding gene gene with protein product Approved 11p15.1 11p15.1 "FLJ10852|FLJ10941|HIP14L" "Zinc fingers DHHC-type|Ankyrin repeat domain containing" "76|403" 2004-05-07 2016-02-15 2016-02-15 54503 ENSG00000177054 OTTHUMG00000166099 uc001mpi.4 AB024495 NM_019028 "CCDS44550|CCDS44551" Q8IUH4 18794299 MGI:1919227 RGD:1309736 ZDHHC13 612815 +HGNC:20341 ZDHHC14 zinc finger DHHC-type containing 14 protein-coding gene gene with protein product Approved 6q25.3 06q25.3 "FLJ20984|NEW1CP" Zinc fingers DHHC-type 76 2003-01-27 2016-02-15 2016-02-15 79683 ENSG00000175048 OTTHUMG00000015896 uc003qqt.4 AF542388 NM_153746 "CCDS5252|CCDS47510" Q8IZN3 MGI:2653229 RGD:1565877 ZDHHC14 +HGNC:20342 ZDHHC15 zinc finger DHHC-type containing 15 protein-coding gene gene with protein product Approved Xq13.3 Xq13.3 "FLJ31812|MRX91" "Zinc fingers DHHC-type|X-linked mental retardation" "76|103" 2003-01-28 2016-02-15 2016-02-15 158866 ENSG00000102383 OTTHUMG00000021866 uc004ecg.4 AK056374 NM_144969 "CCDS14430|CCDS55454" Q96MV8 MGI:1915336 RGD:1562075 ZDHHC15 300576 +HGNC:20714 ZDHHC16 zinc finger DHHC-type containing 16 protein-coding gene gene with protein product Approved 10q24.1 10q24.1 APH2 Zinc fingers DHHC-type 76 2003-03-21 2016-02-15 2016-02-15 84287 ENSG00000171307 OTTHUMG00000018847 uc001knj.5 AF258563 NM_032327 "CCDS7460|CCDS7461|CCDS7462|CCDS7463|CCDS73176" Q969W1 12021275 MGI:1921418 RGD:1591893 ZDHHC16 616750 +HGNC:18412 ZDHHC17 zinc finger DHHC-type containing 17 protein-coding gene gene with protein product Approved 12q21.2 12q21.2 "HIP14|HYPH|KIAA0946" "Zinc fingers DHHC-type|Ankyrin repeat domain containing" "76|403" 2004-07-14 2016-02-15 2016-02-15 23390 ENSG00000186908 OTTHUMG00000169917 uc001syk.2 AB023163 NM_015336 CCDS44946 Q8IUH5 "9700202|18794299" MGI:2445110 RGD:1595790 ZDHHC17 607799 +HGNC:20712 ZDHHC18 zinc finger DHHC-type containing 18 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 DKFZp667O2416 Zinc fingers DHHC-type 76 2003-03-21 2016-02-15 2016-02-15 84243 ENSG00000204160 OTTHUMG00000004092 uc001bnb.4 AK056427 NM_032283 CCDS30650 Q9NUE0 MGI:3527792 RGD:1309334 ZDHHC18 +HGNC:20713 ZDHHC19 zinc finger DHHC-type containing 19 protein-coding gene gene with protein product Approved 3q29 03q29 MGC33345 Zinc fingers DHHC-type 76 2003-03-21 2016-02-15 2016-02-15 131540 ENSG00000163958 OTTHUMG00000133642 uc003fwc.4 BC022078 NM_144637 CCDS43190 Q8WVZ1 MGI:2682948 RGD:1309014 ZDHHC19 +HGNC:20749 ZDHHC20 zinc finger DHHC-type containing 20 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 FLJ25952 Zinc fingers DHHC-type 76 2005-03-08 2016-02-15 2016-02-15 253832 ENSG00000180776 OTTHUMG00000017410 uc001uoa.4 AK090979 NM_153251 "CCDS45017|CCDS73551|CCDS81758" Q5W0Z9 MGI:1923215 RGD:1305755 ZDHHC20 +HGNC:39899 ZDHHC20-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:39900 ZDHHC20-IT1 ZDHHC20 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 13q12.11 13q12.11 ZDHHC20 intronic transcript 1 (non-protein coding) 2011-04-08 2015-02-25 2015-02-25 100874367 ENSG00000236953 OTTHUMG00000046192 uc058vvu.1 +HGNC:33456 ZDHHC20P1 zinc finger DHHC-type containing 20 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 OTTHUMG00000086707 2007-05-01 2016-02-15 2016-10-05 100048907 ENSG00000233916 OTTHUMG00000086707 NG_029279 PGOHUM00000243125 +HGNC:33457 ZDHHC20P2 zinc finger DHHC-type containing 20 pseudogene 2 pseudogene pseudogene Approved 6p21.33 06p21.33 OTTHUMG00000133740 2007-05-01 2016-02-15 2016-10-05 100048908 ENSG00000223702 OTTHUMG00000133740 NG_029280 PGOHUM00000243583 +HGNC:39775 ZDHHC20P3 zinc finger DHHC-type containing 20 pseudogene 3 pseudogene pseudogene Approved 11q13.4 11q13.4 2011-03-29 2016-02-15 2016-02-15 100874348 ENSG00000255460 OTTHUMG00000165440 NG_032357 PGOHUM00000242372 +HGNC:39776 ZDHHC20P4 zinc finger DHHC-type containing 20 pseudogene 4 pseudogene pseudogene Approved 13q21.33 13q21.33 2011-03-29 2016-02-15 2016-02-15 730239 ENSG00000232380 OTTHUMG00000017050 NG_011414 PGOHUM00000248624 +HGNC:20750 ZDHHC21 zinc finger DHHC-type containing 21 protein-coding gene gene with protein product Approved 9p22.3 09p22.3 "HSPC097|DNZ1" Zinc fingers DHHC-type 76 2004-02-06 2016-02-15 2016-02-15 340481 ENSG00000175893 OTTHUMG00000019573 uc003zlh.3 AF161360 NM_178566 CCDS6475 Q8IVQ6 19956733 MGI:1915518 RGD:1305750 ZDHHC21 614605 +HGNC:20106 ZDHHC22 zinc finger DHHC-type containing 22 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 C14orf59 chromosome 14 open reading frame 59 Zinc fingers DHHC-type 76 2003-01-13 2004-03-10 2016-02-15 2016-02-15 283576 ENSG00000177108 OTTHUMG00000171575 uc010asp.3 AK095612 NM_174976 CCDS45140 Q8N966 MGI:2685108 RGD:1308446 ZDHHC22 +HGNC:28654 ZDHHC23 zinc finger DHHC-type containing 23 protein-coding gene gene with protein product Approved 3q13.31 03q13.31 MGC42530 Zinc fingers DHHC-type 76 2004-03-05 2016-02-15 2016-02-15 254887 ENSG00000184307 OTTHUMG00000159335 uc003eau.4 AK127025 NM_173570 CCDS33827 Q8IYP9 22399288 MGI:2685625 RGD:1303254 ZDHHC23 +HGNC:27387 ZDHHC24 zinc finger DHHC-type containing 24 protein-coding gene gene with protein product Approved 11q13.2 11q13.2 Zinc fingers DHHC-type 76 2005-03-14 2016-02-15 2016-02-15 254359 ENSG00000174165 OTTHUMG00000167096 uc001oin.2 BC005015 NM_207340 CCDS8143 Q6UX98 MGI:1917855 RGD:1565630 ZDHHC24 +HGNC:11642 ZEB1 zinc finger E-box binding homeobox 1 protein-coding gene gene with protein product Approved 10p11.22 10p11.22 "BZP|ZEB|AREB6|NIL-2-A|Zfhep|Zfhx1a|FECD6" "TCF8|PPCD3" "transcription factor 8 (represses interleukin 2 expression)|posterior polymorphous corneal dystrophy 3" "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 1991-12-17 2007-02-15 2007-02-15 2014-11-19 6935 ENSG00000148516 OTTHUMG00000017907 uc001ivs.5 AK091478 NM_030751 "CCDS7169|CCDS44370|CCDS53505|CCDS53506|CCDS53507" P37275 "1427828|1840704|15384081|16252232" MGI:1344313 RGD:3831 ZEB1 189909 8618 120584 +HGNC:42354 ZEB1-AS1 ZEB1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10p11.22 10p11.22 ZEB1 antisense RNA 1 (non-protein coding) 2011-06-30 2012-08-15 2014-11-18 220930 ENSG00000237036 OTTHUMG00000017905 uc057soa.1 NR_024284 616915 +HGNC:14881 ZEB2 zinc finger E-box binding homeobox 2 protein-coding gene gene with protein product Approved 2q22.3 02q22.3 "KIAA0569|SIP-1|SIP1" SMAD interacting protein 1 ZFHX1B zinc finger homeobox 1b "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 2001-03-14 2007-02-15 2007-02-15 2015-07-31 9839 ENSG00000169554 OTTHUMG00000187624 uc002tvu.4 AB011141 NM_014795 "CCDS2186|CCDS54403" O60315 MGI:1344407 RGD:1307272 ZEB2 605802 8619 120593 +HGNC:37149 ZEB2-AS1 ZEB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 2q22.3 02q22.3 ZEB2NAT ZEB2 natural antisense transcript "ZEB2AS|ZEB2-AS" "ZEB2 antisense RNA (non-protein coding)|ZEB2 antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2009-08-30 2010-11-25 2012-08-15 2015-07-31 100303491 ENSG00000238057 OTTHUMG00000153879 uc061ohe.1 NR_040248 "18347095|26152796" RGD:9273023 zeb2nat +HGNC:33346 ZEB2P1 zinc finger E-box binding homeobox 2 pseudogene 1 pseudogene pseudogene Approved 4p15.32 04p15.32 ZEB1P1 ZF class homeoboxes and pseudogenes 529 2007-02-15 2007-03-08 2007-03-08 2014-11-19 100420926 ENSG00000249506 OTTHUMG00000160179 NG_025087 8572 PGOHUM00000245474 +HGNC:30960 ZER1 zyg-11 related cell cycle regulator protein-coding gene gene with protein product Approved 9q34.11 09q34.11 "ZYG|Hzyg" "C9orf60|ZYG11BL" "chromosome 9 open reading frame 60|zyg-11 homolog B (C. elegans)-like|zer-1 homolog (C. elegans)" ZYG11 cell cycle regulator family 6 2004-01-06 2007-01-04 2016-04-19 2016-10-05 10444 ENSG00000160445 OTTHUMG00000020759 uc004bwa.3 X99802 NM_006336 CCDS6910 Q7Z7L7 11719588 MGI:2442511 RGD:1310284 ZER1 +HGNC:25858 ZFAND1 zinc finger AN1-type containing 1 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 FLJ14007 zinc finger, AN1-type domain 1 Zinc fingers AN1-type 63 2005-03-18 2016-02-12 2016-02-12 79752 ENSG00000104231 OTTHUMG00000164684 uc003ycj.3 NM_024699 "CCDS6232|CCDS55250|CCDS55251" Q8TCF1 24121501 MGI:1913611 RGD:1309519 ZFAND1 +HGNC:28073 ZFAND2A zinc finger AN1-type containing 2A protein-coding gene gene with protein product Approved 7p22.3 07p22.3 AIRAP arsenite inducible RNA associated protein zinc finger, AN1-type domain 2A Zinc fingers AN1-type 63 2005-08-22 2016-02-12 2016-02-12 90637 ENSG00000178381 OTTHUMG00000119019 uc003skc.4 BC029558 NM_182491 CCDS5323 Q8N6M9 20185824 MGI:2140729 RGD:1310991 ZFAND2A 610699 +HGNC:25206 ZFAND2B zinc finger AN1-type containing 2B protein-coding gene gene with protein product Approved 2q35 02q35 AIRAPL arsenite inducible RNA associated protein-like "zinc finger, AN1-type 2B|zinc finger, AN1-type domain 2B" Zinc fingers AN1-type 63 2005-08-22 2016-02-12 2016-02-12 130617 ENSG00000158552 OTTHUMG00000133135 uc031rri.1 AK074571 NM_138802 "CCDS2435|CCDS74656" Q8WV99 18467495 MGI:1916068 RGD:1306260 ZFAND2B 613474 +HGNC:18019 ZFAND3 zinc finger AN1-type containing 3 protein-coding gene gene with protein product Approved 6p21.2 06p21.2 FLJ13222 TEX27 "testis expressed sequence 27|zinc finger, AN1-type domain 3" Zinc fingers AN1-type 63 2002-01-18 2005-12-15 2016-02-12 2016-02-12 60685 ENSG00000156639 OTTHUMG00000014629 uc003onx.4 AK023284 NM_021943 CCDS4836 Q9H8U3 MGI:1096572 RGD:1307113 ZFAND3 607455 +HGNC:23504 ZFAND4 zinc finger AN1-type containing 4 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 FLJ40185 ANUBL1 "AN1, ubiquitin-like, homolog (Xenopus laevis)|zinc finger, AN1-type domain 4" Zinc fingers AN1-type 63 2003-11-21 2011-11-10 2016-02-12 2016-02-12 93550 ENSG00000172671 OTTHUMG00000018085 uc001jcm.6 AF311324 NM_174890 "CCDS7214|CCDS60520" Q86XD8 MGI:1914742 RGD:628707 ZFAND4 +HGNC:13008 ZFAND5 zinc finger AN1-type containing 5 protein-coding gene gene with protein product Approved 9q21.13 09q21.13 ZFAND5A "ZNF216|ZA20D2" "zinc finger protein 216|zinc finger, A20 domain containing 2|zinc finger, AN1-type domain 5" Zinc fingers AN1-type 63 1998-04-20 2006-07-07 2016-02-12 2016-02-12 7763 ENSG00000107372 OTTHUMG00000020008 uc031ted.1 AF062072 NM_001278243 CCDS6642 O76080 9758550 MGI:1278334 RGD:1310776 ZFAND5 604761 +HGNC:30164 ZFAND6 zinc finger AN1-type containing 6 protein-coding gene gene with protein product Approved 15q25.1 15q25.1 "ZFAND5B|AWP1" protein associated with PRK1 ZA20D3 "zinc finger, A20 domain containing 3|zinc finger, AN1-type domain 6" Zinc fingers AN1-type 63 2004-09-10 2006-07-07 2016-02-12 2016-10-05 54469 ENSG00000086666 OTTHUMG00000144169 uc002bfe.2 BC005283 NM_019006 "CCDS10313|CCDS58395" Q6FIF0 11054541 MGI:1929510 RGD:1359317 ZFAND6 610183 +HGNC:42978 ZFAND6P1 zinc finger AN1-type containing 6 pseudogene 1 pseudogene pseudogene Approved 9p13.3 09p13.3 zinc finger, AN1-type domain 6 pseudogene 1 2011-09-12 2016-02-12 2016-02-12 100631382 ENSG00000244213 OTTHUMG00000019859 NG_029329 PGOHUM00000261990 +HGNC:33101 ZFAS1 ZNFX1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q13.13 20q13.13 "HSUP1|HSUP2" "C20orf199|NCRNA00275|ZNFX1-AS1" "chromosome 20 open reading frame 199|non-protein coding RNA 275|ZNFX1 antisense RNA 1 (non-protein coding)" Long non-coding RNAs 788 2006-08-07 2013-02-06 2012-08-15 2014-11-19 441951 ENSG00000177410 OTTHUMG00000032698 uc061xqc.1 "AY513722|AY513723" NR_003604 21460236 MGI:1916199 zfas1 +HGNC:19899 ZFAT zinc finger and AT-hook domain containing protein-coding gene gene with protein product Approved 8q24.22 08q24.22 KIAA1485 "ZNF406|ZFAT1" "zinc finger protein 406|zinc finger and AT hook domain containing" Zinc fingers C2H2-type 28 2002-11-29 2008-01-25 2015-11-23 2016-10-05 57623 ENSG00000066827 OTTHUMG00000164321 uc003yup.4 BC025423 NM_001029939 "CCDS43768|CCDS47924|CCDS55275|CCDS55276" Q9P243 "10819331|18329245" MGI:2681865 RGD:1310886 ZFAT 610931 +HGNC:33992 ZFAT-AS1 ZFAT antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.22 08q24.22 "SAS-ZFAT|NCRNA00070" non-protein coding RNA 70 "ZFATAS|ZFAT-AS" "ZFAT antisense RNA (non-protein coding)|ZFAT antisense RNA 1 (non-protein coding)" 2008-02-12 2010-11-25 2012-08-15 2012-10-12 594840 ENSG00000248492 OTTHUMG00000164323 uc003yus.1 AB167742 NR_002438 "15294872|22894909" +HGNC:28328 ZFC3H1 zinc finger C3H1-type containing protein-coding gene gene with protein product Approved 12q21.1 12q21.1 "MGC23401|KIAA0546|CSRC2" "PSRC2|CCDC131" "proline/serine-rich coiled-coil 2|coiled-coil domain containing 131" Zinc fingers 26 2005-12-01 2008-10-01 2016-02-12 2016-03-14 196441 ENSG00000133858 OTTHUMG00000169545 uc001swo.4 AB011118 NM_144982 CCDS41813 O60293 9628581 MGI:2446143 RGD:1306287 ZFC3H1 +HGNC:20152 ZFHX2 zinc finger homeobox 2 protein-coding gene gene with protein product Approved 14q11.2 14q11.2 "KIAA1762|KIAA1056|ZFH-5" ZNF409 zinc finger protein 409 "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 2002-12-18 2015-08-24 85446 ENSG00000136367 OTTHUMG00000156894 uc010tno.2 AB051549 NM_014894 CCDS55907 Q9C0A1 "11214970|10470851" MGI:2686934 RGD:735143 ZFHX2 8620 +HGNC:777 ZFHX3 zinc finger homeobox 3 protein-coding gene gene with protein product Approved 16q22.2-q22.3 16q22.2-q22.3 ZNF927 ATBF1 AT-binding transcription factor 1 "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 1994-11-02 2007-08-09 2007-08-09 2016-10-11 463 ENSG00000140836 OTTHUMG00000137599 uc002fck.4 D10250 NM_006885 "CCDS10908|CCDS54035" Q15911 "1719379|7592926" MGI:99948 RGD:1560268 ZFHX3 104155 8621 125 +HGNC:30939 ZFHX4 zinc finger homeobox 4 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "ZFH4|FLJ20980" zinc finger homeodomain 4 ZF class homeoboxes and pseudogenes 529 2004-07-22 2007-07-16 2016-10-05 79776 ENSG00000091656 OTTHUMG00000164557 uc003yau.3 NM_024721 CCDS47878 Q86UP3 "10873665|11935336" MGI:2137668 RGD:1563022 ZFHX4 606940 8622 +HGNC:44165 ZFHX4-AS1 ZFHX4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q21.13 08q21.13 ZFHX4 antisense RNA 1 (non-protein coding) 2012-06-30 2012-08-15 2016-10-05 100192378 ENSG00000253661 OTTHUMG00000164554 uc003yas.5 BC037827 NR_024360 +HGNC:23328 ZFP1 ZFP1 zinc finger protein protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "FLJ34243|ZNF475" "zinc finger protein 1 homolog (mouse)|zinc finger protein 1" Zinc fingers C2H2-type 28 2003-11-07 2012-11-27 2016-10-05 162239 ENSG00000184517 OTTHUMG00000137602 uc002fdq.4 AK094761 NM_153688 "CCDS10914|CCDS82012|CCDS82013" Q6P2D0 2574853 MGI:99154 RGD:1565049 ZFP1 127 +HGNC:26138 ZFP2 ZFP2 zinc finger protein protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "FLJ21628|ZNF751" zinc finger protein 2 homolog (mouse) Zinc fingers C2H2-type 28 2005-05-09 2012-11-27 2014-11-18 80108 ENSG00000198939 OTTHUMG00000130885 uc003mjn.2 AK025281 NM_030613 CCDS4440 Q6ZN57 MGI:99167 RGD:1562610 ZFP2 536 +HGNC:12861 ZFP3 ZFP3 zinc finger protein protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "FLJ30726|ZNF752" "zinc finger protein homologous to Zfp-3 in mouse|zinc finger protein 3 homolog (mouse)" Zinc fingers C2H2-type 28 2001-06-22 2012-11-27 2015-03-03 124961 ENSG00000180787 OTTHUMG00000177799 uc002gaq.4 BX647638 NM_153018 CCDS11067 Q96NJ6 MGI:99177 RGD:1565881 ZFP3 194480 133 +HGNC:29312 ZFP14 ZFP14 zinc finger protein protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "KIAA1559|ZNF531" zinc finger protein 14 homolog (mouse) Zinc fingers C2H2-type 28 2006-06-30 2012-11-27 2014-11-19 57677 ENSG00000142065 OTTHUMG00000180675 uc010eex.3 AB046779 NM_020917 CCDS33002 Q9HCL3 10997877 MGI:99160 RGD:1560188 ZFP14 540 +HGNC:17801 ZFP28 ZFP28 zinc finger protein protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "KIAA1431|mkr5" zinc finger protein 28 homolog (mouse) Zinc fingers C2H2-type 28 2001-12-19 2012-11-27 2014-11-19 140612 ENSG00000196867 OTTHUMG00000181944 uc002qnj.4 NM_020828 "CCDS12946|CCDS77363" Q8NHY6 MGI:99175 RGD:7679103 ZFP28 616798 297 +HGNC:29555 ZFP30 ZFP30 zinc finger protein protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "ZNF745|KIAA0961" zinc finger protein 30 homolog (mouse) Zinc fingers C2H2-type 28 2006-03-02 2012-11-27 2016-10-05 22835 ENSG00000120784 OTTHUMG00000048177 uc002ogx.2 AB023178 NM_014898 CCDS33005 Q9Y2G7 10231032 MGI:99178 RGD:6500781 ZFP30 136 +HGNC:12862 ZFP36 ZFP36 ring finger protein protein-coding gene gene with protein product Approved 19q13.1 19q13.1 "RNF162A|TIS11|G0S24|TTP|NUP475" tristetraprolin zinc finger protein 36, C3H type, homolog (mouse) Ring finger proteins 58 1991-04-30 2012-11-27 2016-04-25 7538 ENSG00000128016 OTTHUMG00000182970 uc002olh.3 M63625 NM_003407 CCDS12534 P26651 1699942 MGI:99180 RGD:620722 ZFP36 190700 +HGNC:1107 ZFP36L1 ZFP36 ring finger protein like 1 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 "RNF162B|Berg36|ERF1|TIS11B|cMG1" BRF1 "zinc finger protein, C3H type, 36-like 1|zinc finger protein 36, C3H type-like 1" Ring finger proteins 58 1995-05-09 2001-11-23 2016-06-30 2016-06-30 677 ENSG00000185650 OTTHUMG00000171385 uc001xki.3 X79066 NM_004926 CCDS9791 Q07352 8024689 MGI:107946 RGD:62009 ZFP36L1 601064 +HGNC:1108 ZFP36L2 ZFP36 ring finger protein like 2 protein-coding gene gene with protein product Approved 2p21 02p21 "ERF2|RNF162C|TIS11D" BRF2 "zinc finger protein 36, C3H type-like 1|zinc finger protein 36, C3H type-like 2" Ring finger proteins 58 1995-05-09 2001-11-23 2016-06-30 2016-10-05 678 ENSG00000152518 OTTHUMG00000128642 uc002rsv.5 X78992 NM_006887 CCDS1811 P47974 "7835719|8545129|14981510|17172869" MGI:107945 RGD:1308913 ZFP36L2 612053 +HGNC:12863 ZFP37 ZFP37 zinc finger protein protein-coding gene gene with protein product Approved 9q32 09q32 ZNF906 "zinc finger protein homologous to Zfp37 in mouse|zinc finger protein 37 homolog (mouse)" Zinc fingers C2H2-type 28 1997-03-19 2012-11-27 2014-11-19 7539 ENSG00000136866 OTTHUMG00000021019 uc011lwz.3 AF022158 NM_003408 "CCDS6787|CCDS65109|CCDS65110" Q9Y6Q3 MGI:99181 RGD:2323040 ZFP37 602951 505 +HGNC:26786 ZFP41 ZFP41 zinc finger protein protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "FLJ38705|FLJ00028|ZNF753" zinc finger protein 41 homolog (mouse) Zinc fingers C2H2-type 28 2005-10-06 2012-11-27 2016-04-25 286128 ENSG00000181638 OTTHUMG00000164951 uc064qwy.1 NM_173832 CCDS6397 Q8N8Y5 11214971 MGI:99186 RGD:1307587 ZFP41 673 +HGNC:30949 ZFP42 ZFP42 zinc finger protein protein-coding gene gene with protein product Approved 4q35.2 04q35.2 "REX1|ZNF754" "zinc finger protein 42 homolog (mouse)|zinc finger protein 42" Zinc fingers C2H2-type 28 2005-05-09 2012-11-27 2014-11-19 132625 ENSG00000179059 OTTHUMG00000160235 uc003izh.2 AK056719 NM_174900 CCDS3849 Q96MM3 12110702 MGI:99187 RGD:2319177 ZFP42 614572 +HGNC:18791 ZFP57 ZFP57 zinc finger protein protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "ZNF698|bA145L22|bA145L22.2" C6orf40 "chromosome 6 open reading frame 40|zinc finger protein 57 homolog (mouse)" Zinc fingers C2H2-type 28 2003-11-26 2005-07-20 2012-11-27 2016-04-25 346171 ENSG00000204644 OTTHUMG00000031158 uc011dlw.2 AL050328 XM_294093 CCDS43436 Q9NU63 MGI:99204 RGD:1302981 ZFP57 612192 206724 +HGNC:23241 ZFP62 ZFP62 zinc finger protein protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "FLJ34231|ZET|ZNF755" "zinc finger protein 62 homolog (mouse)|zinc finger protein 62" Zinc fingers C2H2-type 28 2003-10-28 2012-11-27 2016-04-25 643836 ENSG00000196670 OTTHUMG00000162273 uc011dhe.3 AK002206 NM_152283 "CCDS47357|CCDS54955" Q8NB50 8808410 MGI:99662 RGD:1560191 ZFP62 610281 422 +HGNC:15940 ZFP64 ZFP64 zinc finger protein protein-coding gene gene with protein product Approved 20q13.2 20q13.2 "FLJ10734|dJ831D17.1|FLJ12628|dJ548G19.1" ZNF338 "zinc finger protein 338|zinc finger protein 64 homolog (mouse)|zinc finger protein 64" Zinc fingers C2H2-type 28 2001-06-21 2012-11-27 2016-10-05 55734 ENSG00000020256 OTTHUMG00000032756 uc002xwk.4 AK001596 NM_018197 "CCDS13439|CCDS13440|CCDS13441|CCDS13442|CCDS82630" "Q9NPA5|Q9NTW7" 9034307 MGI:107342 RGD:1307948 ZFP64 +HGNC:19820 ZFP64P1 ZFP64 zinc finger protein pseudogene 1 pseudogene pseudogene Approved 14q22.1 14q22.1 ZNF405P "zinc finger protein 405 pseudogene|zinc finger protein 405 (pseudogene)|zinc finger protein 405, pseudogene|zinc finger protein 64 homolog (mouse) pseudogene 1" 2003-01-13 2011-02-25 2012-11-27 2014-11-18 319123 ENSG00000258491 OTTHUMG00000170900 NG_002504 PGOHUM00000247799 +HGNC:24708 ZFP69 ZFP69 zinc finger protein protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "ZKSCAN23A|FLJ16030|ZFP69A|ZSCAN54A" ZFP69 zinc finger protein A ZNF642 zinc finger protein 642 Zinc fingers C2H2-type 28 2004-11-03 2012-11-27 2012-11-27 2014-11-19 339559 ENSG00000187815 OTTHUMG00000007303 uc009vwb.4 AK122618 NM_198494 CCDS30686 Q49AA0 MGI:107794 RGD:2322990 14 +HGNC:28053 ZFP69B ZFP69 zinc finger protein B protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "ZKSCAN23B|FLJ34293|ZSCAN54B" ZNF643 zinc finger protein 643 Zinc fingers C2H2-type 28 2004-11-03 2012-11-27 2012-11-27 2016-04-25 65243 ENSG00000187801 OTTHUMG00000007302 uc001cfn.3 BC017498 NM_023070 CCDS452 Q9UJL9 13 +HGNC:28682 ZFP82 ZFP82 zinc finger protein protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "MGC45380|KIAA1948" ZNF545 "zinc finger protein 545|zinc finger protein 82 homolog (mouse)|zinc finger protein 82" Zinc fingers C2H2-type 28 2004-02-13 2008-07-01 2012-11-27 2014-11-19 284406 ENSG00000181007 OTTHUMG00000048146 uc002ody.2 AL834267 NM_133466 CCDS12493 Q8N141 11853319 MGI:1890753 RGD:6499485 ZFP82 220 +HGNC:23329 ZFP90 ZFP90 zinc finger protein protein-coding gene gene with protein product Approved 16q22.1 16q22.1 "KIAA1954|NK10|ZNF756" zinc finger protein 90 homolog (mouse) Zinc fingers C2H2-type 28 2003-11-07 2012-11-27 2014-11-19 146198 ENSG00000184939 OTTHUMG00000177312 uc010cff.4 AK074332 XM_085375 "CCDS42183|CCDS76892|CCDS82003" Q8TF47 7576184 MGI:104786 RGD:1563077 ZFP90 609451 596 +HGNC:14983 ZFP91 ZFP91 zinc finger protein protein-coding gene gene with protein product Approved 11q12.1 11q12.1 "PZF|ZNF757" "zinc finger protein homologous to Zfp91 in mouse|zinc finger protein 91 homolog (mouse)" Zinc fingers C2H2-type 28 2001-03-27 2012-11-27 2016-10-05 80829 ENSG00000186660 OTTHUMG00000137391 uc001nmx.5 AB056107 NM_053023 CCDS31553 Q96JP5 "12738986|20682767" MGI:104854 RGD:628736 ZFP91 +HGNC:33441 ZFP91-CNTF ZFP91-CNTF readthrough (NMD candidate) other readthrough Approved 11q12.1 11q12.1 2011-05-31 2013-05-09 2014-11-19 386607 ENSG00000255073 OTTHUMG00000166280 uc058bpo.1 AB057443 NM_170768 12738986 ZFP91-CNTF +HGNC:12865 ZFP92 ZFP92 zinc finger protein protein-coding gene gene with protein product Approved Xq28 Xq28 ZNF897 "zinc finger protein homologous to Zfp92 in mouse|zinc finger protein 92 homolog (mouse)" Zinc fingers C2H2-type 28 2000-02-18 2012-11-27 2014-11-19 139735 ENSG00000189420 OTTHUMG00000024198 uc011myo.3 U82695 XM_017029281 CCDS59177 A6NM28 MGI:108094 RGD:1559446 ZFP92 1113 +HGNC:12868 ZFPL1 zinc finger protein like 1 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 "D11S750|MCG4" zinc-finger protein in MEN1 region 1997-10-30 2016-02-12 2016-10-05 7542 ENSG00000162300 OTTHUMG00000165597 uc001ocq.2 NM_006782 CCDS8092 O95159 9653652 MGI:1891017 RGD:1586738 ZFPL1 +HGNC:19762 ZFPM1 zinc finger protein, FOG family member 1 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 "FOG1|FOG|ZNF89A|ZC2HC11A" zinc finger protein, multitype 1 "Zinc fingers C2H2-type|Zinc fingers C2HC-type" "28|66" 2002-11-26 2012-11-27 2014-11-19 161882 ENSG00000179588 OTTHUMG00000173152 uc002fkv.4 AF488691 XM_011522912 CCDS32502 Q8IX07 MGI:1095400 RGD:1582810 ZFPM1 601950 +HGNC:16700 ZFPM2 zinc finger protein, FOG family member 2 protein-coding gene gene with protein product Approved 8q23 08q23 "FOG2|hFOG-2|ZNF89B|ZC2HC11B" zinc finger protein, multitype 2 "Zinc fingers C2H2-type|Zinc fingers C2HC-type" "28|66" 2002-11-26 2012-11-27 2013-01-10 23414 ENSG00000169946 OTTHUMG00000164818 uc003ymd.4 AF119334 XM_011516947 CCDS47908 Q8WW38 "9927675|10438528" MGI:1334444 RGD:1306021 ZFPM2 603693 120598 +HGNC:50698 ZFPM2-AS1 ZFPM2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q23.1 08q23.1 2014-06-09 2014-06-09 102723356 ENSG00000251003 OTTHUMG00000164861 BF244158 NR_125797 +HGNC:17277 ZFR zinc finger RNA binding protein protein-coding gene gene with protein product Approved 5p13.3 05p13.3 "ZFR1|SPG71" 2001-12-07 2016-10-05 51663 ENSG00000056097 OTTHUMG00000161979 uc003jhr.2 AF100742 XR_427659 CCDS34139 Q96KR1 "11574164|24482476" MGI:1341890 RGD:1311890 ZFR 615635 403392 +HGNC:29189 ZFR2 zinc finger RNA binding protein 2 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 KIAA1086 KIAA1086 2004-02-10 2008-03-25 2008-03-25 2014-11-18 23217 ENSG00000105278 OTTHUMG00000180918 uc002lyw.3 AB029009 NM_015174 "CCDS45921|CCDS45922" Q9UPR6 10470851 MGI:2143792 RGD:1304737 ZFR2 +HGNC:38030 ZFRP1 zinc finger RNA binding protein pseudogene 1 pseudogene pseudogene Approved Xq11.1 Xq11.1 2010-03-23 2014-11-19 100129438 ENSG00000234570 OTTHUMG00000021694 NG_023000 PGOHUM00000241347 +HGNC:12869 ZFX zinc finger protein, X-linked protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 ZNF926 Zinc fingers C2H2-type 28 1988-07-06 2016-10-05 7543 ENSG00000005889 OTTHUMG00000021264 uc004dbd.3 NM_003410 "CCDS14211|CCDS55390|CCDS83461" P17010 MGI:99211 RGD:1562664 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZFX ZFX 314980 517 +HGNC:40617 ZFX-AS1 ZFX antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp22.11 Xp22.11 ZFX antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2014-11-19 100873922 ENSG00000234230 OTTHUMG00000021263 uc031thb.1 NR_046657 +HGNC:12870 ZFY zinc finger protein, Y-linked protein-coding gene gene with protein product Approved Yp11.2 Yp11.2 ZNF911 Zinc fingers C2H2-type 28 1988-07-06 2016-10-05 7544 ENSG00000067646 OTTHUMG00000036159 uc065cpg.1 L10393 NM_003411 "CCDS14774|CCDS48200|CCDS48201" P08048 2497060 ZFY 490000 528 +HGNC:38798 ZFY-AS1 ZFY antisense RNA 1 non-coding RNA RNA, long non-coding Approved Yp11.31 Yp11.31 "ZFYAS|ZFY-AS" "ZFY antisense RNA (non-protein coding)|ZFY antisense RNA 1 (non-protein coding)" 2010-08-05 2010-11-25 2012-08-15 2012-10-12 100506003 ENSG00000233070 OTTHUMG00000036156 uc065cpj.1 +HGNC:13180 ZFYVE1 zinc finger FYVE-type containing 1 protein-coding gene gene with protein product Approved 14q24.2 14q24.2 "DFCP1|KIAA1589|TAFF1|PPP1R172" protein phosphatase 1, regulatory subunit 172 ZNFN2A1 "zinc finger protein, subfamily 2A (FYVE domain containing), 1|zinc finger, FYVE domain containing 1" Zinc fingers FYVE-type 81 2000-05-02 2003-03-07 2016-02-15 2016-02-15 53349 ENSG00000165861 OTTHUMG00000171365 uc001xnm.5 AF251025 NM_021260 "CCDS9811|CCDS41969|CCDS61498" Q9HBF4 "11024279|11256955" MGI:3026685 RGD:1307795 ZFYVE1 605471 +HGNC:6775 ZFYVE9 zinc finger FYVE-type containing 9 protein-coding gene gene with protein product Approved 1p32.3 01p32.3 "SMADIP|SARA|PPP1R173" protein phosphatase 1, regulatory subunit 173 MADHIP "MAD, mothers against decapentaplegic homolog (Drosophila) interacting protein, receptor activation anchor|zinc finger, FYVE domain containing 9" Zinc fingers FYVE-type 81 2000-06-08 2004-05-26 2016-02-15 2016-02-15 9372 ENSG00000157077 OTTHUMG00000008061 uc001cto.5 AF104304 NM_007324 "CCDS563|CCDS564" O95405 9865696 MGI:2652838 RGD:1310856 ZFYVE9 603755 +HGNC:33359 ZFYVE9P1 zinc finger FYVE-type containing 9 pseudogene 1 pseudogene pseudogene Approved Xq26.3 Xq26.3 zinc finger, FYVE domain containing 9 pseudogene 1 2010-09-28 2016-02-15 2016-02-15 100289259 ENSG00000229562 OTTHUMG00000022526 NG_022707 PGOHUM00000242043 +HGNC:39046 ZFYVE9P2 zinc finger FYVE-type containing 9 pseudogene 2 pseudogene pseudogene Approved 2p24.2 02p24.2 zinc finger, FYVE domain containing 9 pseudogene 2 2010-09-28 2016-02-15 2016-02-15 100420972 ENSG00000214843 OTTHUMG00000151762 NG_023679 PGOHUM00000240587 +HGNC:20756 ZFYVE16 zinc finger FYVE-type containing 16 protein-coding gene gene with protein product Approved 5q14.1 05q14.1 "KIAA0305|PPP1R69" "endofin|protein phosphatase 1, regulatory subunit 69" zinc finger, FYVE domain containing 16 "Zinc fingers FYVE-type|Protein phosphatase 1 regulatory subunits" "81|694" 2003-04-01 2016-02-15 2016-02-15 9765 ENSG00000039319 OTTHUMG00000108178 uc003kgq.6 AB002303 NM_014733 CCDS4050 Q7Z3T8 11546807 MGI:2145181 RGD:1564784 ZFYVE16 608880 +HGNC:20758 ZFYVE19 zinc finger FYVE-type containing 19 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "FLJ14840|ANCHR" abscission/nocut checkpoint regulator zinc finger, FYVE domain containing 19 Zinc fingers FYVE-type 81 2003-04-01 2016-02-15 2016-02-15 84936 ENSG00000166140 OTTHUMG00000172537 uc001zmt.2 AK027746 NM_032850 "CCDS42025|CCDS58353|CCDS58354|CCDS58355" Q96K21 24814515 MGI:1919258 RGD:1561576 ZFYVE19 +HGNC:20760 ZFYVE21 zinc finger FYVE-type containing 21 protein-coding gene gene with protein product Approved 14q32.33 14q32.33 "MGC2550|ZF21" zinc finger, FYVE domain containing 21 Zinc fingers FYVE-type 81 2003-04-01 2016-02-15 2016-02-15 79038 ENSG00000100711 OTTHUMG00000171651 uc001yoc.4 AK057816 NM_024071 "CCDS9985|CCDS55948" Q9BQ24 21768110 MGI:1915770 RGD:1311036 ZFYVE21 613504 +HGNC:20761 ZFYVE26 zinc finger FYVE-type containing 26 protein-coding gene gene with protein product Approved 14q24.1 14q24.1 KIAA0321 "spastizin|FYVE-CENT" SPG15 "spastic paraplegia 15 (complicated, autosomal recessive)|zinc finger, FYVE domain containing 26" Zinc fingers FYVE-type 81 2003-04-01 2016-02-15 2016-02-15 23503 ENSG00000072121 OTTHUMG00000171274 uc001xka.2 AB002319 NM_015346 CCDS9788 Q68DK2 "9205841|18394578" MGI:1924767 RGD:1307820 ZFYVE26 612012 159390 +HGNC:26559 ZFYVE27 zinc finger FYVE-type containing 27 protein-coding gene gene with protein product Approved 10q24.2 10q24.2 "FLJ32919|SPG33" protrudin zinc finger, FYVE domain containing 27 Zinc fingers FYVE-type 81 2004-03-05 2016-02-15 2016-02-15 118813 ENSG00000155256 OTTHUMG00000018867 uc001kom.3 BC030621 NM_144588 "CCDS31263|CCDS31264|CCDS53562|CCDS53563|CCDS53564|CCDS53565|CCDS31262" Q5T4F4 14702039 MGI:1919602 RGD:735177 ZFYVE27 610243 +HGNC:29334 ZFYVE28 zinc finger FYVE-type containing 28 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 KIAA1643 zinc finger, FYVE domain containing 28 Zinc fingers FYVE-type 81 2004-03-05 2016-02-15 2016-02-15 57732 ENSG00000159733 OTTHUMG00000160292 uc003gex.3 AK126692 XM_035371 "CCDS33942|CCDS54708|CCDS54709|CCDS54710|CCDS54711|CCDS54712" Q9HCC9 10997877 MGI:2684992 RGD:1310151 ZFYVE28 614176 +HGNC:30961 ZG16 zymogen granule protein 16 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "hZG16|JCLN1|ZG16A" JCLN "jacalin-like lectin domain containing|zymogen granule protein 16 homolog (rat)" 2009-01-05 2009-03-11 2012-12-07 2015-01-12 653808 ENSG00000174992 OTTHUMG00000177139 uc002dtr.5 AK125559 NM_152338 CCDS54000 O60844 21110947 MGI:1916286 RGD:620346 ZG16 +HGNC:30456 ZG16B zymogen granule protein 16B protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "HRPE773|PRO1567|JCLN2" jacalin-like lectin domain containing 2 zymogen granule protein 16 homolog B (rat) 2009-03-11 2012-12-07 2015-01-12 124220 ENSG00000162078 OTTHUMG00000128933 uc002cru.4 BC009722 NM_145252 CCDS10479 Q96DA0 21110947 RGD:3623 ZG16B +HGNC:37245 ZGLP1 zinc finger, GATA-like protein 1 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "GLP1|GLP-1|GATAD3" "GATA like protein 1|GATA zinc finger domain containing 3" GATA zinc finger domain containing 82 2009-10-02 2015-08-24 100125288 ENSG00000220201 OTTHUMG00000152114 uc002mnw.5 AK096830 NM_001103167 CCDS45959 P0C6A0 16982049 MGI:3696042 RGD:2322460 ZGLP1 611639 +HGNC:15948 ZGPAT zinc finger CCCH-type and G-patch domain containing protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "dJ583P15.3|MGC44880|FLJ14972|ZC3HDC9|ZC3H9|GPATC6|GPATCH6|ZIP" KIAA1847 "KIAA1847|zinc finger CCCH-type with G-patch domain" "Zinc fingers CCCH-type|G-patch domain containing" "73|579" 2003-11-21 2004-12-01 2016-02-12 2016-10-05 84619 ENSG00000197114 OTTHUMG00000032998 uc002ygi.3 AK027878 NM_181484 "CCDS13534|CCDS13535|CCDS56203" Q8N5A5 16952911 MGI:2449939 RGD:1310801 ZGPAT +HGNC:25654 ZGRF1 zinc finger GRF-type containing 1 protein-coding gene gene with protein product Approved 4q25 04q25 FLJ11331 C4orf21 chromosome 4 open reading frame 21 "Zinc fingers GRF-type|UPF1 like RNA helicases" "135|1169" 2006-03-24 2014-02-18 2016-02-12 2016-02-12 55345 ENSG00000138658 OTTHUMG00000132908 BC044799 NM_018392 CCDS3700 Q86YA3 12477932 MGI:1918893 RGD:1305834 +HGNC:12871 ZHX1 zinc fingers and homeoboxes 1 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 zinc-fingers and homeoboxes 1 "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 1999-08-19 2004-01-23 2015-07-14 11244 ENSG00000165156 OTTHUMG00000165088 uc003yqe.4 AF106862 NM_001017926 CCDS6342 Q9UKY1 10441475 MGI:109271 RGD:620010 ZHX1 604764 8596 +HGNC:42975 ZHX1-C8orf76 ZHX1-C8orf76 readthrough other readthrough Approved 8q24.13 08q24.13 2011-09-28 2014-03-20 2014-03-20 2014-03-20 100533106 ENSG00000259305 OTTHUMG00000165087 uc064pxh.1 NM_001204180 CCDS56552 Q96EF9 +HGNC:18513 ZHX2 zinc fingers and homeoboxes 2 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 KIAA0854 zinc-fingers and homeoboxes 2 "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 2004-01-22 2004-01-23 2015-08-24 22882 ENSG00000178764 OTTHUMG00000165077 uc003ypk.2 AB020661 NM_014943 CCDS6336 Q9Y6X8 "10048485|12741956" MGI:2683087 RGD:727926 ZHX2 609185 8623 +HGNC:15935 ZHX3 zinc fingers and homeoboxes 3 protein-coding gene gene with protein product Approved 20q12 20q12 KIAA0395 TIX1 triple homeobox 1 "Zinc fingers C2H2-type|ZF class homeoboxes and pseudogenes" "28|529" 2001-06-21 2004-01-30 2004-01-29 2014-11-18 23051 ENSG00000174306 OTTHUMG00000032481 uc002xju.2 AB007855 NM_015035 CCDS13315 Q9H4I2 9455477 MGI:2444772 RGD:631431 ZHX3 609598 8624 +HGNC:12872 ZIC1 Zic family member 1 protein-coding gene gene with protein product Approved 3q24 03q24 "ZIC|ZNF201" "Zic family member 1 (odd-paired Drosophila homolog)|Zic family member 1 (odd-paired homolog, Drosophila)" Zinc fingers C2H2-type 28 1997-10-09 2011-05-19 2013-01-08 7545 ENSG00000152977 OTTHUMG00000159456 uc003ewe.4 D76435 NM_003412 CCDS3136 Q15915 8542595 MGI:106683 RGD:620110 ZIC1 600470 120606 +HGNC:12873 ZIC2 Zic family member 2 protein-coding gene gene with protein product Approved 13q32.3 13q32.3 HPE5 Zinc finger protein of the cerebellum 2 "Zic family member 2 (odd-paired Drosophila homolog)|Zic family member 2 (odd-paired homolog, Drosophila)" Zinc fingers C2H2-type 28 1998-04-27 2011-05-19 2016-10-05 7546 ENSG00000043355 OTTHUMG00000017279 uc001von.4 AF104902 NM_007129 CCDS9495 O95409 9771712 MGI:106679 RGD:1311174 ZIC2 603073 120610 +HGNC:12874 ZIC3 Zic family member 3 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "HTX|ZNF203" HTX1 "heterotaxy 1|Zic family member 3 (odd-paired homolog, Drosophila)" Zinc fingers C2H2-type 28 1993-11-16 2011-05-19 2016-10-05 7547 ENSG00000156925 OTTHUMG00000022525 uc004fak.4 AF028706 XM_017029802 "CCDS14663|CCDS83494" O60481 "8298651|7747776" MGI:106676 RGD:1561261 ZIC3 300265 120613 +HGNC:20393 ZIC4 Zic family member 4 protein-coding gene gene with protein product Approved 3q24 03q24 zinc finger protein of the cerebellum 4 Zinc fingers C2H2-type 28 2003-02-03 2003-02-21 2013-01-08 84107 ENSG00000174963 OTTHUMG00000037281 uc003ewd.3 AF332509 XM_017007314 "CCDS43160|CCDS54652|CCDS54653|CCDS58857" Q8N9L1 MGI:107201 RGD:1307298 ZIC4 608948 120618 +HGNC:40920 ZIC4-AS1 ZIC4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3q24 03q24 ZIC4 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100873950 ENSG00000241202 OTTHUMG00000159453 uc062ott.1 +HGNC:20322 ZIC5 Zic family member 5 protein-coding gene gene with protein product Approved 13q32.3 13q32.3 Zic family member 5 (odd-paired homolog, Drosophila) Zinc fingers C2H2-type 28 2003-01-30 2011-05-19 2016-10-05 85416 ENSG00000139800 OTTHUMG00000017280 uc001vom.2 AF378304 NM_033132 CCDS9494 Q96T25 MGI:1929518 RGD:1310160 ZIC5 +HGNC:33104 ZIK1 zinc finger protein interacting with K protein 1 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 ZNF762 zinc finger protein interacting with K protein 1 homolog (mouse) Zinc fingers C2H2-type 28 2006-08-11 2012-12-07 2014-11-19 284307 ENSG00000171649 OTTHUMG00000183468 uc002qpg.4 AK092538 NM_001010879 "CCDS33135|CCDS82407|CCDS82408" Q3SY52 MGI:108070 RGD:1590949 ZIK1 771 +HGNC:38031 ZIK1P1 zinc finger protein interacting with K protein 1 pseudogene 1 pseudogene pseudogene Approved Xq25 Xq25 zinc finger protein interacting with K protein 1 homolog (mouse) pseudogene 1 2010-03-23 2012-12-07 2014-11-19 100131493 ENSG00000237426 OTTHUMG00000022340 NG_023003 PGOHUM00000241528 +HGNC:12875 ZIM2 zinc finger imprinted 2 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 ZNF656 Zinc fingers C2H2-type 28 1999-10-20 2016-03-07 2016-03-07 23619 ENSG00000269699 OTTHUMG00000171953 uc010etp.4 AF166122 NM_015363 CCDS33123 Q9NZV7 ZIM2 1195 +HGNC:51304 ZIM2-AS1 ZIM2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.43 19q13.43 ZIM2as 2014-09-26 2014-09-26 101929059 ENSG00000269793 OTTHUMG00000182160 NR_110744 19539734 +HGNC:16366 ZIM3 zinc finger imprinted 3 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 ZNF657 Zinc fingers C2H2-type 28 2001-08-23 2016-03-07 2016-03-07 114026 ENSG00000141946 OTTHUMG00000183102 uc002qnz.1 AF365931 NM_052882 CCDS33125 Q96PE6 RGD:6499280 ZIM3 300 +HGNC:13101 ZKSCAN1 zinc finger with KRAB and SCAN domains 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "KOX18|PHZ-37|ZSCAN33" "ZNF139|ZNF36" zinc finger protein 36 (KOX 18) Zinc fingers C2H2-type 28 1990-09-30 2004-11-17 2004-11-16 2016-10-05 7586 ENSG00000106261 OTTHUMG00000156534 uc003usk.3 X52349 NM_003439 "CCDS34698|CCDS69349|CCDS75640" P17029 MGI:1921820 RGD:1560616 ZKSCAN1 601260 562 +HGNC:25677 ZKSCAN2 zinc finger with KRAB and SCAN domains 2 protein-coding gene gene with protein product Approved 16p12.1 16p12.1 "FLJ23199|ZSCAN34" ZNF694 zinc finger protein 694 "Zinc fingers C2H2-type|Myb/SANT domain containing" "28|532" 2005-05-13 2007-02-20 2007-02-20 2015-09-08 342357 ENSG00000155592 OTTHUMG00000177180 uc002dod.5 AK026852 NM_001012981 CCDS32410 Q63HK3 MGI:2444060 RGD:1359568 ZKSCAN2 593 +HGNC:13853 ZKSCAN3 zinc finger with KRAB and SCAN domains 3 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "Zfp47|ZF47|ZSCAN35" "ZNF306|ZNF309" "zinc finger protein 306|zinc finger protein 309" Zinc fingers C2H2-type 28 2001-09-20 2007-02-20 2007-02-20 2014-11-19 80317 ENSG00000189298 OTTHUMG00000014521 uc003nle.4 U71601 NM_024493 "CCDS4650|CCDS56408" Q9BRR0 "10520746|22531714" MGI:1919989 RGD:1305753 ZKSCAN3 612791 433 +HGNC:13854 ZKSCAN4 zinc finger with KRAB and SCAN domains 4 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "p373c6.1|P1P373C6|FLJ32136|ZSCAN36" "ZNF307|ZNF427" "zinc finger protein 307|zinc finger protein 427" Zinc fingers C2H2-type 28 2003-11-27 2007-02-20 2007-02-20 2016-10-05 387032 ENSG00000187626 OTTHUMG00000014511 uc003nks.2 AK056698 NM_019110 CCDS4647 Q969J2 19008334 MGI:3649412 RGD:1309004 ZKSCAN4 611643 430 +HGNC:12867 ZKSCAN5 zinc finger with KRAB and SCAN domains 5 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "ZNF914|ZSCAN37" ZFP95 "zinc finger protein homologous to Zfp95 in mouse|zinc finger protein 95 homolog (mouse)" Zinc fingers C2H2-type 28 1999-08-23 2007-02-20 2007-02-20 2016-10-05 23660 ENSG00000196652 OTTHUMG00000156749 uc003uqv.4 AF170025 NM_014569 CCDS5667 Q9Y2L8 10585779 MGI:107533 RGD:1311175 ZKSCAN5 611272 456 +HGNC:12955 ZKSCAN7 zinc finger with KRAB and SCAN domains 7 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "FLJ12738|ZSCAN39" "ZNF64|ZNF448|ZNF167" "zinc finger protein 64|zinc finger protein 448|zinc finger protein 167" Zinc fingers C2H2-type 28 1995-06-01 2013-01-09 2013-01-09 2016-10-05 55888 ENSG00000196345 OTTHUMG00000186378 uc003cnj.5 "L32164|AY280798" NM_018651 "CCDS2714|CCDS2715|CCDS74924" Q9P0L1 "7814019|1505991" MGI:3040678 RGD:1305242 542 +HGNC:49867 ZKSCAN7P1 zinc finger with KRAB and SCAN domains 7 pseudogene 1 pseudogene pseudogene Approved 12p12.3 12p12.3 2014-03-18 2014-03-18 100419827 ENSG00000256138 OTTHUMG00000168843 NG_024067 PGOHUM00000239695 +HGNC:12983 ZKSCAN8 zinc finger with KRAB and SCAN domains 8 protein-coding gene gene with protein product Approved 6p21 06p21 "LD5-1|ZSCAN40" ZNF192 zinc finger protein 192 Zinc fingers C2H2-type 28 1997-02-14 2013-01-09 2013-01-09 2015-08-24 7745 ENSG00000198315 OTTHUMG00000014510 uc003nkn.3 XM_011514870 CCDS4645 Q15776 MGI:1913815 RGD:1308983 602240 155 +HGNC:29377 ZMAT1 zinc finger matrin-type 1 protein-coding gene gene with protein product Approved Xq22.1 Xq22.1 KIAA1789 Zinc fingers matrin-type 84 2004-09-06 2016-02-12 2016-10-05 84460 ENSG00000166432 OTTHUMG00000022044 uc011mrl.3 Z69304 XM_005262212 CCDS35348 Q5H9K5 MGI:2442284 RGD:1565344 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZMAT1 ZMAT1 +HGNC:26433 ZMAT2 zinc finger matrin-type 2 protein-coding gene gene with protein product Approved 5q31.3 05q31.3 "FLJ31121|hSNU23|Snu23" Zinc fingers matrin-type 84 2004-09-06 2016-02-12 2016-10-05 153527 ENSG00000146007 OTTHUMG00000129503 uc003lgy.2 AK055683 NM_144723 CCDS4239 Q96NC0 12477932 MGI:1913742 RGD:1583592 ZMAT2 +HGNC:29983 ZMAT3 zinc finger matrin-type 3 protein-coding gene gene with protein product Approved 3q26.32 03q26.32 "WIG1|MGC10613|FLJ12296|WIG-1|PAG608" Zinc fingers matrin-type 84 2006-06-30 2016-02-12 2016-02-12 64393 ENSG00000172667 OTTHUMG00000157290 uc003fjg.5 AK122768 NM_152240 "CCDS3224|CCDS46962" Q9HA38 "9400996|11689294" MGI:1195270 RGD:620134 ZMAT3 606452 +HGNC:25844 ZMAT4 zinc finger matrin-type 4 protein-coding gene gene with protein product Approved 8p11.21 08p11.21 FLJ13842 Zinc fingers matrin-type 84 2005-03-22 2016-02-12 2016-02-12 79698 ENSG00000165061 OTTHUMG00000164049 uc003xnr.5 AK023904 NM_024645 "CCDS34885|CCDS47848" Q9H898 21269563 MGI:2443497 RGD:1584398 ZMAT4 +HGNC:28046 ZMAT5 zinc finger matrin-type 5 protein-coding gene gene with protein product Approved 22q12.2 22q12.2 SNRNP20 "U11/U12 snRNP 20K|zinc finger CCCH-type containing 19" ZC3H19 zinc finger CCCH-type containing 19 "Zinc fingers CCCH-type|Zinc fingers matrin-type" "73|84" 2005-05-12 2015-07-06 2016-02-12 2016-02-12 55954 ENSG00000100319 OTTHUMG00000151292 uc003agn.4 NM_019103 CCDS13868 Q9UDW3 9847074 MGI:1914428 RGD:1559774 ZMAT5 +HGNC:16493 ZMIZ1 zinc finger MIZ-type containing 1 protein-coding gene gene with protein product Approved 10q22.3 10q22.3 "RP11-519K18.1|KIAA1224|FLJ13541|hZIMP10|Zimp10|MIZ" RAI17 retinoic acid induced 17 Zinc fingers MIZ-type 85 2001-12-07 2006-10-24 2016-02-12 2016-02-12 57178 ENSG00000108175 OTTHUMG00000018560 uc001kaf.3 AB033050 NM_020338 CCDS7357 Q9ULJ6 15626329 MGI:3040693 RGD:1311620 ZMIZ1 607159 +HGNC:27433 ZMIZ1-AS1 ZMIZ1 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.3 10q22.3 2013-02-15 2014-11-19 283050 ENSG00000224596 OTTHUMG00000018559 uc001jzz.4 NR_024431 +HGNC:22229 ZMIZ2 zinc finger MIZ-type containing 2 protein-coding gene gene with protein product Approved 7p13 07p13 "KIAA1886|hZIMP7|ZIMP7|DKFZp761I2123|NET27" Zinc fingers MIZ-type 85 2006-10-24 2016-02-12 2016-02-12 83637 ENSG00000122515 OTTHUMG00000155817 uc003tlr.4 AK090415 NM_031449 "CCDS43576|CCDS43577|CCDS75591" Q8NF64 MGI:106374 RGD:1309256 ZMIZ2 611196 +HGNC:12877 ZMPSTE24 zinc metallopeptidase STE24 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 "FACE-1|Ste24p|STE24|HGPS|PRO1" "Hutchinson-Gilford progeria syndrome|CAAX prenyl protease 1 homolog" "zinc metalloproteinase (STE24 homolog, yeast)|zinc metallopeptidase (STE24 homolog, yeast)|zinc metallopeptidase STE24 homolog (S. cerevisiae)" 1999-09-17 2012-12-10 2016-10-12 10269 ENSG00000084073 OTTHUMG00000005762 uc001cfg.5 Y13834 XR_001736906 CCDS449 O75844 "10373325|9700155|16671095" MGI:1890508 RGD:1305570 "ZMPSTE24 @ LOVD|http://www.LOVD.nl/ZMPSTE24|Leiden Muscular Dystrophy pages|http://www.dmd.nl/nmdb2/home.php?select_db=ZMPSTE24|LRG_212|http://www.lrg-sequence.org/LRG/LRG_212" ZMPSTE24 606480 120620 M48.003 3.4.24.84 +HGNC:26253 ZMYM1 zinc finger MYM-type containing 1 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "FLJ23151|MYM" zinc finger, MYM domain containing 1 Zinc fingers MYM-type 86 2004-03-29 2016-02-15 2016-02-15 79830 ENSG00000197056 OTTHUMG00000004374 uc031txc.2 AK096206 NM_024772 CCDS41302 Q5SVZ6 12477932 MGI:1915560 RGD:1307027 ZMYM1 +HGNC:12989 ZMYM2 zinc finger MYM-type containing 2 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "RAMP|FIM|MYM" ZNF198 zinc finger protein 198 Zinc fingers MYM-type 86 1997-07-22 2006-07-13 2016-02-15 2016-10-05 7750 ENSG00000121741 OTTHUMG00000016507 uc031zxu.1 AF012126 NM_003453 CCDS45016 Q9UBW7 "9499416|9425908" MGI:1923257 RGD:1593255 ZMYM2 602221 +HGNC:39936 ZMYM2-IT1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:13054 ZMYM3 zinc finger MYM-type containing 3 protein-coding gene gene with protein product Approved Xq13.1 Xq13.1 "ZNF198L2|DXS6673E|KIAA0385|MYM" ZNF261 zinc finger protein 261 Zinc fingers MYM-type 86 1999-02-15 2005-12-19 2016-02-15 2016-02-15 9203 ENSG00000147130 OTTHUMG00000021799 uc004dzh.3 AB002383 NM_201599 "CCDS14409|CCDS55443|CCDS55444" Q14202 10486218 MGI:1927231 RGD:1564967 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZMYM3 ZMYM3 300061 +HGNC:13055 ZMYM4 zinc finger MYM-type containing 4 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "KIAA0425|ZNF198L3|MYM" ZNF262 zinc finger protein 262 Zinc fingers MYM-type 86 1999-02-15 2005-12-19 2016-02-15 2016-10-05 9202 ENSG00000146463 OTTHUMG00000004241 uc001byt.3 AB007885 NM_005095 CCDS389 Q5VZL5 10449923 MGI:1915035 RGD:1309545 ZMYM4 613568 +HGNC:40624 ZMYM4-AS1 ZMYM4 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p34.3 01p34.3 ZMYM4 antisense RNA 1 (non-protein coding) 2011-12-05 2012-08-15 2014-11-19 100861513 ENSG00000227409 OTTHUMG00000004369 uc057eru.1 "BG187713|BG208679" +HGNC:13029 ZMYM5 zinc finger MYM-type containing 5 protein-coding gene gene with protein product Approved 13q12.11 13q12.11 "ZNF198L1|MYM" ZNF237 zinc finger protein 237 Zinc fingers MYM-type 86 1998-10-30 2005-09-12 2016-02-15 2016-10-05 9205 ENSG00000132950 OTTHUMG00000016504 uc010tcn.1 AF161535 NM_014242 "CCDS31942|CCDS31943" Q9UJ78 MGI:3041170 RGD:1306353 ZMYM5 616443 +HGNC:39911 ZMYM5-AS1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:13050 ZMYM6 zinc finger MYM-type containing 6 protein-coding gene gene with protein product Approved 1p34.3 01p34.3 "ZNF198L4|MYM|Buster2|ZBED7" zinc finger, BED-type containing 7 ZNF258 zinc finger protein 258 Zinc fingers MYM-type 86 1999-02-15 2005-09-12 2016-02-15 2016-10-05 9204 ENSG00000163867 OTTHUMG00000004163 uc001byh.4 AF055470 NM_007167 CCDS387 O95789 "10486218|23533661" MGI:106505 RGD:1561833 ZMYM6 613567 +HGNC:9397 ZMYND8 zinc finger MYND-type containing 8 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 RACK7 PRKCBP1 protein kinase C binding protein 1 "Zinc fingers MYND-type|PHD finger proteins|PWWP domain containing" "87|88|1147" 1999-10-19 2007-01-29 2016-02-15 2016-02-15 23613 ENSG00000101040 OTTHUMG00000032667 uc061xnt.1 U48251 NM_183047 "CCDS13404|CCDS13405|CCDS46613|CCDS63300|CCDS63301|CCDS63304|CCDS63306|CCDS74738|CCDS63305|CCDS63303" Q9ULU4 MGI:1918025 RGD:1309544 ZMYND8 615713 objectId:2781 +HGNC:19412 ZMYND10 zinc finger MYND-type containing 10 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "BLU|CILD22" Zinc fingers MYND-type 87 2003-05-01 2016-02-15 2016-10-05 51364 ENSG00000004838 OTTHUMG00000156874 uc003dag.2 U70824 NM_015896 "CCDS2825|CCDS77747" O75800 "12629521|23891469" MGI:2387863 RGD:1303250 ZMYND10 607070 360500 +HGNC:40890 ZMYND10-AS1 ZMYND10 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 ZMYND10 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100874210 ENSG00000235058 OTTHUMG00000156875 uc062kef.1 +HGNC:16966 ZMYND11 zinc finger MYND-type containing 11 protein-coding gene gene with protein product Approved 10p15.3 10p15.3 BS69 "Zinc fingers MYND-type|PHD finger proteins|PWWP domain containing" "87|88|1147" 2004-04-20 2016-02-15 2016-04-25 10771 ENSG00000015171 OTTHUMG00000017526 uc010pzu.3 X86098 NM_006624 "CCDS55696|CCDS55697|CCDS7052|CCDS7053|CCDS73060|CCDS73061|CCDS81436" Q15326 "7621829|10734313" MGI:1913755 RGD:1303252 ZMYND11 608668 444761 objectId:2782 +HGNC:21192 ZMYND12 zinc finger MYND-type containing 12 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 DKFZp434N2435 Zinc fingers MYND-type 87 2003-05-23 2016-02-15 2016-10-05 84217 ENSG00000066185 OTTHUMG00000007333 uc001chj.4 AK057384 NM_032257 CCDS467 Q9H0C1 11230166 MGI:2140259 RGD:1307175 ZMYND12 +HGNC:20997 ZMYND15 zinc finger MYND-type containing 15 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 DKFZp434N127 Zinc fingers MYND-type 87 2003-05-01 2016-02-15 2016-10-05 84225 ENSG00000141497 OTTHUMG00000090760 uc002fyv.4 AL136893 NM_032265 "CCDS11053|CCDS45584|CCDS58506" Q9H091 11230166 MGI:3603821 RGD:1309845 ZMYND15 614312 401603 +HGNC:21146 ZMYND19 zinc finger MYND-type containing 19 protein-coding gene gene with protein product Approved 9q34.3 09q34.3 MIZIP Zinc fingers MYND-type 87 2003-05-20 2016-02-15 2016-02-15 116225 ENSG00000165724 OTTHUMG00000020992 uc004cno.2 BC012948 NM_138462 CCDS7048 Q96E35 MGI:1914437 RGD:735079 ZMYND19 611424 +HGNC:44540 ZMYND19P1 zinc finger MYND-type containing 19 pseudogene 1 pseudogene pseudogene Approved 14q24.3 14q24.3 2012-11-15 2016-02-15 2016-02-15 100421055 ENSG00000258917 OTTHUMG00000171543 NG_027392 PGOHUM00000248238 +HGNC:12878 ZNF1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-12 +HGNC:12991 ZNF2 zinc finger protein 2 protein-coding gene gene with protein product Approved 2q11.1 02q11.1 "A1-5|ZNF661|Zfp661" zinc finger protein 2 (A1-5) Zinc fingers C2H2-type 28 1989-05-31 2005-02-07 2015-02-02 7549 ENSG00000275111 OTTHUMG00000155150 uc032nuy.2 X60152 NM_021088 "CCDS42712|CCDS42713|CCDS62957|CCDS77434|CCDS77435" Q9BSG1 "8183940|1945843" MGI:1919430 RGD:6500748 ZNF2 194500 345 +HGNC:13089 ZNF3 zinc finger protein 3 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "A8-51|KOX25|PP838|FLJ20216|HF.12|Zfp113" zinc finger protein 3 (A8-51) Zinc fingers C2H2-type 28 1989-05-31 2006-05-05 2014-11-19 7551 ENSG00000166526 OTTHUMG00000154596 uc031syk.2 AF027136 NM_017715 "CCDS43618|CCDS43619" P17036 MGI:1929116 RGD:6489147 ZNF3 194510 460 +HGNC:13139 ZNF7 zinc finger protein 7 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "KOX4|HF.16" zinc finger protein 7 (KOX 4, clone HF.16) Zinc fingers C2H2-type 28 1989-09-08 2006-05-09 2016-10-05 7553 ENSG00000147789 OTTHUMG00000165200 uc003zeh.4 AB209619 NM_003416 "CCDS6435|CCDS64996|CCDS64998|CCDS64999|CCDS83336" P17097 "2106481|1946370" MGI:99208 RGD:6498719 ZNF7 194531 491 +HGNC:13154 ZNF8 zinc finger protein 8 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "HF.18|Zfp128" zinc finger protein 8 (clone HF.18) Zinc fingers C2H2-type 28 1989-09-08 2006-05-09 2015-07-22 7554 ENSG00000278129 OTTHUMG00000182073 uc002qry.2 M29581 NM_021089 CCDS12974 P17098 2106481 MGI:2389445 RGD:7606541 ZNF8 194532 329 +HGNC:12879 ZNF10 zinc finger protein 10 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 KOX1 zinc finger protein 10 (KOX 1) Zinc fingers C2H2-type 28 1990-06-13 2005-05-22 2014-11-19 7556 ENSG00000256223 OTTHUMG00000167944 uc001ulq.4 "X52332|BC024182" NM_015394 CCDS9283 P21506 "7865130|8262519" ZNF10 194538 81 +HGNC:12902 ZNF12 zinc finger protein 12 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "KOX3|GIOT-3" ZNF325 zinc finger protein 325 Zinc fingers C2H2-type 28 1990-06-13 2005-06-09 2016-10-05 7559 ENSG00000164631 OTTHUMG00000151910 uc003sqt.3 "X52334|AB021643" NM_016265 "CCDS47538|CCDS47539" P17014 MGI:99157 RGD:1564396 ZNF12 194536 148 +HGNC:12924 ZNF14 zinc finger protein 14 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "KOX6|GIOT-4" zinc finger protein 14 (KOX 6) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2015-08-26 7561 ENSG00000105708 OTTHUMG00000182362 uc002nnk.2 AA286756 NM_021030 CCDS12409 P17017 "MGI:3036263|MGI:3648690" RGD:620185 ZNF14 194556 197 +HGNC:12946 ZNF15L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12947 ZNF16 zinc finger protein 16 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 KOX9 zinc finger protein 16 (KOX 9) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2016-10-05 7564 ENSG00000170631 OTTHUMG00000165253 uc003zet.3 X52340 NM_006958 CCDS6437 P17020 RGD:7613843 ZNF16 601262 493 +HGNC:12958 ZNF17 zinc finger protein 17 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "HPF3|KOX10|KIAA1947|FLJ40864|FLJ46058|FLJ46615" zinc finger protein 17 (HPF3, KOX 10) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2015-08-26 7565 ENSG00000186272 OTTHUMG00000183371 uc002qoo.2 X52341 NM_006959 "CCDS42636|CCDS82405" P17021 "2115127|2014798" ZNF17 305 +HGNC:12969 ZNF18 zinc finger protein 18 protein-coding gene gene with protein product Approved 17p12 17p12 "ZKSCAN6|KOX11|HDSG1|Zfp535|ZNF535|ZSCAN38" zinc finger protein 18 (KOX 11) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2014-11-19 7566 ENSG00000154957 OTTHUMG00000178307 uc002gnh.2 X52342 XM_085596 "CCDS32568|CCDS76957" P17022 15702252 MGI:1289293 RGD:1305130 ZNF18 194524 500 +HGNC:12981 ZNF19 zinc finger protein 19 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 "KOX12|MGC51021" zinc finger protein 19 (KOX 12) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2016-10-05 7567 ENSG00000157429 OTTHUMG00000137593 uc002fam.2 X52343 NM_006961 CCDS10901 P17023 "1505991|1946370" ZNF19 194525 124 +HGNC:12992 ZNF20 zinc finger protein 20 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 KOX13 zinc finger protein 20 (KOX 13) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2015-08-26 7568 ENSG00000132010 OTTHUMG00000156409 uc002mtf.3 X52344 NM_021143 CCDS45986 P17024 ZNF20 194557 185 +HGNC:13012 ZNF22 zinc finger protein 22 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "KOX15|HKR-T1|ZNF422|Zfp422" Zinc fingers C2H2-type 28 1990-06-13 2012-07-12 2016-10-05 7570 ENSG00000165512 OTTHUMG00000018064 uc001jbw.4 BC041139 NM_006963 CCDS7211 P17026 MGI:1914505 RGD:620229 ZNF22 194529 568 +HGNC:13023 ZNF23 zinc finger protein 23 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 "KOX16|Zfp612|ZNF612" ZNF359 zinc finger protein 359 Zinc fingers C2H2-type 28 1990-06-13 2012-07-12 2014-11-18 7571 ENSG00000167377 OTTHUMG00000176797 uc002fah.4 X52347 NM_145911 "CCDS10900|CCDS76895" P17027 MGI:2443465 RGD:1307197 ZNF23 194527 123 +HGNC:13032 ZNF24 zinc finger protein 24 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "ZSCAN3|Zfp191|KOX17" ZNF191 zinc finger protein 24 (KOX 17) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2016-10-05 7572 ENSG00000172466 OTTHUMG00000132565 uc002kys.3 AF016052 NM_006965 "CCDS11912|CCDS77175" P17028 MGI:1929704 RGD:727963 ZNF24 194534 153 +HGNC:13043 ZNF25 zinc finger protein 25 protein-coding gene gene with protein product Approved 10p11.21 10p11.21 "KOX19|FLJ31890|Zfp9" zinc finger protein 25 (KOX 19) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2016-10-05 219749 ENSG00000175395 OTTHUMG00000019344 uc001ize.2 AK056452 "NM_145011|NM_006966" CCDS7195 P17030 "1639412|8464732" MGI:99210 RGD:2293498 ZNF25 194528 42 +HGNC:13053 ZNF26 zinc finger protein 26 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 "KOX20|FLJ20755" zinc finger protein 26 (KOX 20) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2014-11-19 7574 ENSG00000198393 OTTHUMG00000167936 uc001ull.3 X52351 NM_019591 "CCDS31939|CCDS81756" P17031 ZNF26 194537 78 +HGNC:13073 ZNF28 zinc finger protein 28 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "KOX24|DKFZp781D0275" zinc finger protein 28 (KOX 24) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2016-04-25 7576 ENSG00000198538 OTTHUMG00000154564 uc002qad.4 X52355 NM_006969 CCDS33093 P17035 ZNF28 1197 +HGNC:13080 ZNF29P zinc finger protein 29, pseudogene pseudogene pseudogene Approved 17p12 17p12 KOX26 ZNF29 "zinc finger protein 29 (KOX 26)|zinc finger protein 29 pseudogene|zinc finger protein 29 (pseudogene)" 1990-06-13 2009-11-20 2010-08-03 2015-10-30 7577 ENSG00000108452 OTTHUMG00000059142 X52357 NG_007542 2288909 194535 785 +HGNC:13090 ZNF30 zinc finger protein 30 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "KOX28|DKFZp686N19164|FLJ20562" zinc finger protein 30 (KOX 28) Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2015-08-27 90075 ENSG00000168661 OTTHUMG00000182960 uc010edr.2 X52359 NM_194325 "CCDS46044|CCDS46045" P17039 ZNF30 215 +HGNC:51179 ZNF30-AS1 ZNF30 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.11 19q13.11 2014-08-01 2014-08-01 102723513 ENSG00000270876 OTTHUMG00000184607 NR_110749 +HGNC:13095 ZNF32 zinc finger protein 32 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 KOX30 zinc finger protein 32 (KOX 30) Zinc fingers C2H2-type 28 1990-06-13 2006-05-11 2016-10-05 7580 ENSG00000169740 OTTHUMG00000018043 uc001jbc.4 U69645 NM_006973 CCDS7206 P17041 MGI:2448537 RGD:1559850 ZNF32 194539 512 +HGNC:23577 ZNF32-AS1 ZNF32 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 bA402L1.8 ZNF32OS1 "zinc finger protein 32 opposite strand 1|ZNF32 antisense RNA 1 (non-protein coding)" 2004-05-27 2011-09-02 2012-08-15 2012-10-12 414197 ENSG00000226245 OTTHUMG00000018036 uc031puq.1 NR_047557 +HGNC:23593 ZNF32-AS2 ZNF32 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 b402L1.7 ZNF32OS2 "zinc finger protein 32 opposite strand 2|ZNF32 antisense RNA 2 (non-protein coding)" 2004-05-27 2011-09-02 2012-08-15 2012-10-12 414208 ENSG00000230565 OTTHUMG00000018039 uc031pur.1 NR_047558 +HGNC:23583 ZNF32-AS3 ZNF32 antisense RNA 3 non-coding RNA RNA, long non-coding Approved 10q11.21 10q11.21 bA402L1.3 C10orf44 "chromosome 10 open reading frame 44|ZNF32 antisense RNA 3 (non-protein coding)" 2004-05-27 2011-09-16 2012-08-15 2014-11-19 414201 ENSG00000223910 OTTHUMG00000018037 uc001jba.3 BC033403 NR_038867 +HGNC:13096 ZNF33A zinc finger protein 33A protein-coding gene gene with protein product Approved 10p11.1 10p11.1 "KOX5|KOX31|KIAA0065|FLJ23404|ZZAPK" zinc finger and ZAK associated protein with KRAB domain "ZNF33|ZNF11A" "zinc finger protein 33a (KOX 31)|zinc finger protein 11A" Zinc fingers C2H2-type 28 1990-06-13 2005-03-18 2016-10-05 7581 ENSG00000189180 OTTHUMG00000017983 uc001izh.4 D31763 NM_006974 "CCDS31182|CCDS60514|CCDS73088|CCDS73089|CCDS44372" Q06730 "2014798|8464732" ZNF33A 194521 43 +HGNC:13097 ZNF33B zinc finger protein 33B protein-coding gene gene with protein product Approved 10q11.21 10q11.21 "KOX31|KOX2" ZNF11B "zinc finger protein 33b (KOX 31)|zinc finger protein 11B" Zinc fingers C2H2-type 28 1991-09-13 2005-03-18 2016-10-05 7582 ENSG00000196693 OTTHUMG00000018014 uc001jaf.1 "X68688|AJ491697" NM_006955 CCDS7198 Q06732 2014798 ZNF33B 194522 44 +HGNC:44975 ZNF33BP1 zinc finger protein 33B pseudogene 1 pseudogene pseudogene Approved 10p11.21 10p11.21 2012-12-20 2016-10-05 100419868 ENSG00000225192 OTTHUMG00000017978 NR_051997 PGOHUM00000238410 967 +HGNC:30957 ZNF33CP zinc finger protein 33C, pseudogene pseudogene pseudogene Approved 10p11.2 10p11.2 BA393J16.4 ZNF33AP1 zinc finger protein 33A pseudogene 1 2010-04-14 2015-10-30 2015-10-30 2015-10-30 79231 ENSG00000235197 OTTHUMG00000017982 NG_002659 1059 +HGNC:13098 ZNF34 zinc finger protein 34 protein-coding gene gene with protein product Approved 8q24 08q24 KOX32 zinc finger protein 34 (KOX 32) Zinc fingers C2H2-type 28 1990-06-13 2006-05-11 2014-11-18 80778 ENSG00000196378 OTTHUMG00000165248 uc003zdy.6 BC028136 NM_030580 "CCDS47945|CCDS69562" Q8IZ26 "8104631|2014798" RGD:1566248 ZNF34 194526 490 +HGNC:13099 ZNF35 zinc finger protein 35 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "HF.10|HF10|Zfp105" zinc finger protein 35 (clone HF.10) Zinc fingers C2H2-type 28 1990-06-11 2006-05-11 2016-10-05 7584 ENSG00000169981 OTTHUMG00000133091 uc003cnq.4 X07289 NM_003420 CCDS2718 P13682 "2108922|1572646" MGI:1277119 RGD:1309905 ZNF35 194533 389 +HGNC:13100 ZNF35P entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-05-11 +HGNC:13102 ZNF37A zinc finger protein 37A protein-coding gene gene with protein product Approved 10p11.2 10p11.2 "KOX21|ZNF37" zinc finger protein 37a (KOX 21) Zinc fingers C2H2-type 28 1990-09-30 2006-05-11 2015-09-29 7587 ENSG00000075407 OTTHUMG00000017990 uc001izl.4 X69115 NM_003421 "CCDS31183|CCDS81451" P17032 "2014798|8464732" ZNF37A 616085 32 +HGNC:13103 ZNF37BP zinc finger protein 37B, pseudogene pseudogene pseudogene Approved 10q11.21 10q11.21 "KOX21|FLJ23327" ZNF37B "zinc finger protein 37b (KOX 21)|zinc finger protein 37B|zinc finger protein 37B (pseudogene)" 1991-09-13 2010-08-03 2010-08-03 2015-10-30 100129482 ENSG00000234420 OTTHUMG00000018011 AK026980 NR_026777 "2014798|8464732" 1184 +HGNC:29445 ZNF37CP zinc finger protein 37C, pseudogene pseudogene pseudogene Approved 10p11.21 10p11.21 ZNF37C zinc finger protein 37C (pseudogene) 2009-06-12 2015-05-20 2012-09-17 2015-10-30 79232 ENSG00000151963 OTTHUMG00000017981 NG_002660 PGOHUM00000290104 1059 +HGNC:13107 ZNF41 zinc finger protein 41 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 "MGC8941|MRX89" "Zinc fingers C2H2-type|X-linked mental retardation" "28|103" 1990-10-23 2016-10-05 7592 ENSG00000147124 OTTHUMG00000021448 uc004dhy.5 X60155 NM_153380 CCDS14279 P51814 2037297 RGD:1309564 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF41 ZNF41 314995 159118 520 +HGNC:13109 ZNF43 zinc finger protein 43 protein-coding gene gene with protein product Approved 19p12 19p12 "HTF6|KOX27" ZNF39L1 "zinc finger protein 39-like 1 (KOX 27)|zinc finger protein 43 (HTF6)" Zinc fingers C2H2-type 28 1991-02-04 2006-05-11 2016-10-05 7594 ENSG00000198521 OTTHUMG00000128543 uc002nqj.5 X59244 NM_003423 "CCDS12413|CCDS59367|CCDS74321" P17038 1711675 MGI:3040691 ZNF43 603972 206 +HGNC:13106 ZNF43L entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-07-06 +HGNC:13110 ZNF44 zinc finger protein 44 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "KOX7|ZNF504" "ZNF58|ZNF55" "zinc finger protein 58|zinc finger protein 44 (KOX 7)|zinc finger protein 55" Zinc fingers C2H2-type 28 1991-06-06 2006-05-11 2015-09-29 51710 ENSG00000197857 OTTHUMG00000156424 uc010dys.4 X52338 NM_016264 "CCDS45988|CCDS54223" P15621 "1946370|1505991" ZNF44 194542 691 +HGNC:13111 ZNF45 zinc finger protein 45 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 ZNF13 "zinc finger protein 45 (a Kruppel-associated box (KRAB) domain polypeptide)|zinc finger protein 13" Zinc fingers C2H2-type 28 1991-06-06 2005-01-11 2015-09-29 7596 ENSG00000124459 OTTHUMG00000182189 uc002oxw.3 M67509 NM_003425 CCDS12632 Q02386 9067431 RGD:1563843 ZNF45 194554 243 +HGNC:13114 ZNF48 zinc finger protein 48 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 "DKFZp762K013|FLJ31751|MGC43952" ZNF553 zinc finger protein 553 Zinc fingers C2H2-type 28 1991-10-07 2015-08-26 197407 ENSG00000180035 OTTHUMG00000048195 uc021tgi.2 "M88358|AK056313" NM_152652 "CCDS10679|CCDS73868" Q96MX3 1505991 MGI:2384725 RGD:9115869 ZNF48 110 +HGNC:13119 ZNF53A entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-07-06 +HGNC:13120 ZNF53B entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-12-14 +HGNC:13121 ZNF54A entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-07-06 +HGNC:13122 ZNF54B entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-07-06 +HGNC:13124 ZNF56 zinc finger protein 56 other unknown Approved 19p13.1 19p13.1 ZNF742 zinc finger protein 742 Zinc fingers C2H2-type 28 1991-10-07 2014-11-19 7608 M88366 NG_023190 Q15929 1505991 PGOHUM00000261271 740 +HGNC:13125 ZNF57 zinc finger protein 57 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 ZNF424 zinc finger protein 424 Zinc fingers C2H2-type 28 1991-10-07 2014-11-19 126295 ENSG00000171970 OTTHUMG00000164485 uc002lwr.3 M88368 NM_173480 "CCDS12098|CCDS82274" Q68EA5 1505991 ZNF57 165 +HGNC:13127 ZNF59 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13132 ZNF63 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13135 ZNF66 zinc finger protein 66 other unknown Approved 19p12 19p12 FLJ16537 ZNF66P zinc finger protein 66, pseudogene 1991-10-08 2013-03-06 2013-03-06 2013-03-06 7617 ENSG00000160229 OTTHUMG00000167735 uc060wfa.1 M88375 NG_023377 Q6ZN08 1505991 581 +HGNC:13137 ZNF68 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:13138 ZNF69 zinc finger protein 69 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Cos5 zinc finger protein 69 (Cos5) Zinc fingers C2H2-type 28 1991-11-28 2006-05-12 2014-11-19 7620 ENSG00000198429 OTTHUMG00000156526 uc060tvz.1 X60076 NM_021915 CCDS32914 Q9UC07 1639391 ZNF69 194543 140 +HGNC:13140 ZNF70 zinc finger protein 70 protein-coding gene gene with protein product Approved 22q11.23 22q11.23 "Cos17|MGC48959" zinc finger protein 70 (Cos17) Zinc fingers C2H2-type 28 1991-11-28 2006-05-12 2014-11-19 7621 ENSG00000187792 OTTHUMG00000150739 uc002zxs.4 X60077 NM_021916 CCDS13812 Q9UC06 1639391 ZNF70 194544 381 +HGNC:13846 ZNF70P1 zinc finger protein 70 pseudogene 1 pseudogene pseudogene Approved 6p21.32 06p21.32 "dJ1033B10.7|bCX269C15.3" ZNF314P "zinc finger protein 314 pseudogene|zinc finger protein 314 (pseudogene)|zinc finger protein 314, pseudogene" 2004-01-16 2011-02-25 2011-02-25 2014-11-18 100419609 ENSG00000225463 OTTHUMG00000031147 NG_025932 PGOHUM00000243592 +HGNC:13141 ZNF71 zinc finger protein 71 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "Cos26|EZFIT" zinc finger protein 71 (Cos26) Zinc fingers C2H2-type 28 1991-11-28 2006-05-12 2014-11-19 58491 ENSG00000197951 OTTHUMG00000182157 uc002qnm.5 X60074 NM_021216 CCDS12947 Q9NQZ8 1639391 ZNF71 194545 298 +HGNC:13142 ZNF72P zinc finger protein 72, pseudogene pseudogene pseudogene Approved 22q11.1 22q11.1 Cos8 ZNF72 "zinc finger protein 72 (Cos8)|zinc finger protein 72" 1991-11-28 2011-02-25 2011-02-25 2015-10-30 100287084 ENSG00000184624 OTTHUMG00000140359 X60078 1639391 194546 1070 +HGNC:13143 ZNF73 zinc finger protein 73 other unknown Approved 22p11.2 22p11.2 "hZNF2|Cos12" ZNF186 zinc finger protein 73 (Cos12) Zinc fingers C2H2-type 28 1991-11-28 2006-05-12 2015-07-02 7624 O43830 1639391 194547 +HGNC:13144 ZNF74 zinc finger protein 74 protein-coding gene gene with protein product Approved 22q11.21 22q11.21 "Cos52|Zfp520|ZNF520" zinc finger protein 74 (Cos52) Zinc fingers C2H2-type 28 1991-11-28 2006-05-12 2016-10-05 7625 ENSG00000185252 OTTHUMG00000150687 uc010gsm.5 X71623 NM_003426 "CCDS42982|CCDS58794" Q16587 "1639391|10591208" ZNF74 194548 377 +HGNC:13146 ZNF75A zinc finger protein 75a protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ31529 Zinc fingers C2H2-type 28 1997-07-07 2016-10-05 7627 ENSG00000162086 OTTHUMG00000129356 uc002cut.5 X91826 NM_153028 CCDS10501 Q96N20 8661144 ZNF75A 601473 103 +HGNC:13147 ZNF75BP zinc finger protein 75B, pseudogene pseudogene pseudogene Approved 12q12 12q12 ZNF75B "zinc finger protein 75B|zinc finger protein 75B (pseudogene)" 1997-07-07 2010-08-03 2010-08-03 2015-10-30 7628 ENSG00000258212 OTTHUMG00000169428 X91827 NG_001214 8661144 PGOHUM00000291314 979 +HGNC:13148 ZNF75CP zinc finger protein 75C, pseudogene pseudogene pseudogene Approved 11q14.1 11q14.1 ZNF75C "zinc finger protein 75c|zinc finger protein 75C (pseudogene)" 1997-07-07 2010-08-03 2010-08-03 2015-10-30 729944 X91828 NG_008023 Q92670 8661144 PGOHUM00000250413 1088 +HGNC:13145 ZNF75D zinc finger protein 75D protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "ZKSCAN24|D8C6|ZSCAN28" "ZNF82|ZNF75" zinc finger protein 75 (D8C6) Zinc fingers C2H2-type 28 1992-03-25 2008-06-11 2008-06-11 2016-10-05 7626 ENSG00000186376 OTTHUMG00000022482 uc033evx.2 S43109 NM_007131 "CCDS14648|CCDS55503" P51815 1505955 RGD:1584423 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF75D ZNF75D 314997 525 +HGNC:13149 ZNF76 zinc finger protein 76 protein-coding gene gene with protein product Approved 6p21.31 06p21.31 "Zfp523|ZNF523" D6S229E zinc finger protein 76 (expressed in testis) Zinc fingers C2H2-type 28 1992-03-30 2011-02-25 2015-09-11 7629 ENSG00000065029 OTTHUMG00000014564 uc003oki.2 M91592 NM_003427 "CCDS4801|CCDS75435" P36508 1427894 MGI:2687278 RGD:1306239 ZNF76 194549 +HGNC:13150 ZNF77 zinc finger protein 77 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 pT1 zinc finger protein 77 (pT1) Zinc fingers C2H2-type 28 1992-04-07 2006-05-12 2015-08-26 58492 ENSG00000175691 OTTHUMG00000180566 uc002lws.5 X65230 NM_021217 CCDS12099 Q15935 8478004 ZNF77 194551 166 +HGNC:13152 ZNF78L2 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-05-12 +HGNC:13153 ZNF79 zinc finger protein 79 protein-coding gene gene with protein product Approved 9q33.3 09q33.3 pT7 zinc finger protein 79 (pT7) Zinc fingers C2H2-type 28 1992-04-07 2006-05-12 2016-10-05 7633 ENSG00000196152 OTTHUMG00000020703 uc004bqw.5 X65232 NM_007135 "CCDS6871|CCDS69664|CCDS75904" Q15937 8478004 ZNF79 194552 510 +HGNC:13155 ZNF80 zinc finger protein 80 protein-coding gene gene with protein product Approved 3q13.31 03q13.31 pT17 zinc finger protein 80 (pT17) Zinc fingers C2H2-type 28 1992-04-07 2006-05-12 2014-11-19 7634 ENSG00000174255 OTTHUMG00000159332 uc062mqj.1 X65233 NM_007136 CCDS2979 P51504 8478004 RGD:7570552 ZNF80 194553 396 +HGNC:13156 ZNF81 zinc finger protein 81 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 HFZ20 MRX45 "zinc finger protein 81 (HFZ20)|mental retardation, X-linked 45" "Zinc fingers C2H2-type|X-linked mental retardation" "28|103" 1992-04-13 2006-05-12 2014-11-19 347344 ENSG00000197779 OTTHUMG00000021462 uc064ywi.1 AK126949 NM_007137 CCDS43933 P51508 "8507979|15121780" RGD:2323171 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF81 ZNF81 314998 168335 521 +HGNC:13158 ZNF83 zinc finger protein 83 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "FLJ11015|HPF1" ZNF816B "zinc finger protein 83 (HPF1)|zinc finger protein 816B" Zinc fingers C2H2-type 28 1992-04-28 2006-05-12 2015-07-22 55769 ENSG00000167766 OTTHUMG00000182761 uc010epv.4 M27877 NM_018300 CCDS12854 P51522 8088807 ZNF83 194558 274 +HGNC:13159 ZNF84 zinc finger protein 84 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 HPF2 zinc finger protein 84 (HPF2) Zinc fingers C2H2-type 28 1992-04-28 2006-05-12 2015-08-27 7637 ENSG00000198040 OTTHUMG00000167939 uc001ulm.5 M27878 NM_003428 CCDS31940 P51523 ZNF84 79 +HGNC:13160 ZNF85 zinc finger protein 85 protein-coding gene gene with protein product Approved 19p12 19p12 "HPF4|HTF1" zinc finger protein 85 (HPF4, HTF1) Zinc fingers C2H2-type 28 1992-04-28 2006-05-12 2015-07-22 7639 ENSG00000105750 OTTHUMG00000182747 uc002npg.5 U35376 NM_003429 "CCDS32977|CCDS58657" Q03923 2505992 ZNF85 603899 201 +HGNC:13161 ZNF86 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-06-13 +HGNC:13162 ZNF87 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-05-12 +HGNC:13163 ZNF88 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-05-12 +HGNC:13165 ZNF90 zinc finger protein 90 protein-coding gene gene with protein product Approved 19p12 19p12 HTF9 zinc finger protein 90 (HTF9) Zinc fingers C2H2-type 28 1992-04-28 2006-02-01 2015-08-27 7643 ENSG00000213988 OTTHUMG00000158057 uc002nor.3 M61870 NM_007138 CCDS46028 Q03938 8467795 RGD:2322273 ZNF90 603973 741 +HGNC:12888 ZNF90P1 zinc finger protein 90 pseudogene 1 pseudogene pseudogene Approved 3q12.3 03q12.3 "ZNF108|ZNF108P" "zinc finger protein 108 (Y9)|zinc finger protein 108, pseudogene" 1992-04-28 2011-04-07 2011-04-07 2012-10-16 7661 ENSG00000241738 OTTHUMG00000159123 NG_009580 8467795 PGOHUM00000262435 911 +HGNC:21687 ZNF90P2 zinc finger protein 90 pseudogene 2 pseudogene pseudogene Approved 6p22.1 06p22.1 dJ111M5.3 ZNF463P "zinc finger protein 463 pseudogene|zinc finger protein 463, pseudogene" 2003-11-27 2011-04-07 2011-04-07 2014-11-18 100419606 ENSG00000233366 OTTHUMG00000031240 NG_025795 PGOHUM00000243108 821 +HGNC:39882 ZNF90P3 zinc finger protein 90 pseudogene 3 pseudogene pseudogene Approved 7q11.21 07q11.21 2011-04-07 2014-11-18 100873799 ENSG00000233782 OTTHUMG00000156264 NG_032367 +HGNC:13166 ZNF91 zinc finger protein 91 protein-coding gene gene with protein product Approved 19p12 19p12 "HPF7|HTF10" zinc finger protein 91 (HPF7, HTF10) Zinc fingers C2H2-type 28 1992-04-28 2006-05-12 2014-11-18 7644 ENSG00000167232 OTTHUMG00000183268 uc002nre.4 M61871 NM_003430 "CCDS42541|CCDS74322" Q05481 "2023909|2505992" MGI:1914119 ZNF91 603971 209 +HGNC:13168 ZNF92 zinc finger protein 92 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 "HPF12|TF12" zinc finger protein 92 (HTF12) Zinc fingers C2H2-type 28 1992-04-28 2006-05-12 2014-11-19 168374 ENSG00000146757 OTTHUMG00000156557 uc003ttz.5 M61872 NM_152626 "CCDS34646|CCDS47596|CCDS75608|CCDS75609" Q03936 8467795 ZNF92 603974 454 +HGNC:39553 ZNF92P1Y zinc finger protein 92 pseudogene 1, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 2011-02-25 2011-02-25 100419554 ENSG00000215603 OTTHUMG00000041017 NG_024760 PGOHUM00000233685 1051 +HGNC:39554 ZNF92P2 zinc finger protein 92 pseudogene 2 pseudogene pseudogene Approved 19p12 19p12 2011-02-25 2016-07-25 100419705 ENSG00000269505 OTTHUMG00000182929 NG_024170 PGOHUM00000294945 792 +HGNC:39555 ZNF92P3 zinc finger protein 92 pseudogene 3 pseudogene pseudogene Approved 19p12 19p12 2011-02-25 2015-10-30 100419711 ENSG00000269421 OTTHUMG00000183391 NG_024255 PGOHUM00000234643 876 +HGNC:13169 ZNF93 zinc finger protein 93 protein-coding gene gene with protein product Approved 19p12 19p12 "HPF34|TF34|FLJ12488" ZNF505 "zinc finger protein 505|zinc finger protein 93 (HTF34)" Zinc fingers C2H2-type 28 1992-04-28 2006-05-12 2014-11-19 81931 ENSG00000184635 OTTHUMG00000182371 uc002non.4 M61873 NM_031218 CCDS32973 P35789 "8467795|2023909" MGI:2664334 RGD:1587241 ZNF93 603975 199 +HGNC:13170 ZNF94 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-06-13 +HGNC:13171 ZNF95 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-08-30 +HGNC:13173 ZNF97 entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-06-26 +HGNC:13174 ZNF98 zinc finger protein 98 protein-coding gene gene with protein product Approved 19p12 19p12 "ZNF739|F7175" zinc finger protein 739 Zinc fingers C2H2-type 28 1992-04-28 2008-06-12 2010-04-20 2014-02-14 148198 ENSG00000197360 OTTHUMG00000182940 uc002nqt.3 NM_001098626 CCDS46031 A6NK75 ZNF98 603980 1168 +HGNC:13175 ZNF99 zinc finger protein 99 protein-coding gene gene with protein product Approved 19p12 19p12 MGC24986 C19orf9 "zinc finger protein 99 (F8281)|chromosome 19 open reading frame 9" Zinc fingers C2H2-type 28 1992-04-28 2006-01-17 2014-11-18 7652 ENSG00000213973 OTTHUMG00000182992 uc060wjg.1 BC021822 XM_065124 CCDS59369 A8MXY4 RGD:1559684 ZNF99 603981 1167 +HGNC:12880 ZNF100 zinc finger protein 100 protein-coding gene gene with protein product Approved 19p13.1 19p13.1 zinc finger protein 100 (Y1) Zinc fingers C2H2-type 28 1992-04-28 2003-12-19 2015-08-26 163227 ENSG00000197020 OTTHUMG00000182872 uc002nqi.4 BC035579 NM_173531 CCDS42538 Q8IYN0 12477932 ZNF100 603982 205 +HGNC:12881 ZNF101 zinc finger protein 101 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "HZF12|DKFZp570I0164" zinc finger protein 101 (Y2) Zinc fingers C2H2-type 28 1992-04-28 2004-02-10 2015-08-26 94039 ENSG00000181896 OTTHUMG00000167736 uc060wcj.1 AK097169 NM_033204 "CCDS32971|CCDS77271" Q8IZC7 11441184 ZNF101 603983 196 +HGNC:44940 ZNF101P1 zinc finger protein 101 pseudogene 1 pseudogene pseudogene Approved 10p12.1 10p12.1 2012-12-19 2015-11-03 100419867 ENSG00000237746 OTTHUMG00000017869 NG_025421 PGOHUM00000238382 968 +HGNC:44942 ZNF101P2 zinc finger protein 101 pseudogene 2 pseudogene pseudogene Approved 1q31.2 01q31.2 2012-12-19 2012-12-19 730190 ENSG00000234473 OTTHUMG00000035560 NG_022749 PGOHUM00000244381 +HGNC:12882 ZNF102 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12883 ZNF103 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12884 ZNF104 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12885 ZNF105 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12886 ZNF106 zinc finger protein 106 protein-coding gene gene with protein product Approved 15q15.1 15q15.1 "ZNF474|SH3BP3" SH3-domain binding protein 3 ZFP106 zinc finger protein 106 homolog (mouse) Zinc fingers C2H2-type 28 1992-04-28 2012-11-27 2014-11-18 64397 ENSG00000103994 OTTHUMG00000173244 uc001zpw.5 AF205632 NM_022473 "CCDS32208|CCDS61602|CCDS61603" Q9H2Y7 MGI:1270153 RGD:1593644 +HGNC:12887 ZNF107 zinc finger protein 107 protein-coding gene gene with protein product Approved 7q11.2 07q11.2 "ZFD25|smap-7" ZNF588 "zinc finger protein 588|zinc finger protein 107 (Y8)" Zinc fingers C2H2-type 28 1992-04-28 2007-06-26 2015-08-26 51427 ENSG00000196247 OTTHUMG00000129433 uc032zog.1 AB027251 NM_016220 "CCDS5527|CCDS75605|CCDS75606" Q9UII5 8467795 ZNF107 603989 450 +HGNC:12889 ZNF109 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12890 ZNF110 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12891 ZNF111 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12892 ZNF112 zinc finger protein 112 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "ZFP112|ZNF228" "zinc finger protein 112 homolog (mouse)|zinc finger protein 228" Zinc fingers C2H2-type 28 1992-04-28 2012-11-27 2016-10-05 7771 ENSG00000062370 OTTHUMG00000182357 uc002ozc.5 AF198358 NM_013380 Q9UJU3 MGI:1929115 RGD:1305757 603994 256 +HGNC:12893 ZNF113 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12894 ZNF114 zinc finger protein 114 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 MGC17986 Zinc fingers C2H2-type 28 1992-04-28 2014-11-18 163071 ENSG00000178150 OTTHUMG00000183191 uc002pil.2 BC014935 NM_153608 "CCDS12713|CCDS74412" Q8NC26 ZNF114 603996 260 +HGNC:23771 ZNF114P1 zinc finger protein 114 pseudogene 1 pseudogene pseudogene Approved 21q11.2 21q11.2 2003-12-15 2014-11-19 100132509 ENSG00000234538 OTTHUMG00000155503 NG_023336 PGOHUM00000239137 +HGNC:12896 ZNF116 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-06-12 +HGNC:12897 ZNF117 zinc finger protein 117 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 "HPF9|H-plk" zinc finger protein 117 (HPF9) Zinc fingers C2H2-type 28 1992-05-19 2006-06-12 2016-10-05 51351 ENSG00000152926 OTTHUMG00000156631 uc003ttr.3 M27879 NM_024498 CCDS43593 Q03924 1427907 ZNF117 194624 453 +HGNC:12898 ZNF118 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12899 ZNF119 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12903 ZNF120 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12904 ZNF121 zinc finger protein 121 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "ZHC32|ZNF20" D19S204 zinc finger protein 121 (clone ZHC32) Zinc fingers C2H2-type 28 1992-08-24 2006-08-22 2014-11-19 7675 ENSG00000197961 OTTHUMG00000180134 uc010dwt.3 M99593 NM_001008727 "CCDS32902|CCDS77228" P58317 8468057 ZNF121 194628 579 +HGNC:12905 ZNF122 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12906 ZNF123P zinc finger protein 123, pseudogene pseudogene pseudogene Approved 11q24.3 11q24.3 HZF-1 ZNF123 "zinc finger protein 123 (HZF-1)|zinc finger protein 123|zinc finger protein 123 pseudogene|zinc finger protein 123 (pseudogene)" 1992-09-24 2008-06-13 2010-08-03 2012-10-05 100188891 ENSG00000255259 OTTHUMG00000165775 S52506 NG_008436 1339395 194630 PGOHUM00000242536 969 +HGNC:12907 ZNF124 zinc finger protein 124 protein-coding gene gene with protein product Approved 1q44 01q44 "HZF16|HZF-16" zinc finger protein 124 (HZF-16) Zinc fingers C2H2-type 28 1992-09-24 2006-06-13 2015-08-26 7678 ENSG00000196418 OTTHUMG00000041112 uc001ick.4 S54641 NM_003431 "CCDS31089|CCDS58067|CCDS73057|CCDS76278" Q15973 7916577 MGI:5142006 ZNF124 194631 34 +HGNC:12908 ZNF125 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-05-28 +HGNC:12909 ZNF126 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-05-28 +HGNC:12911 ZNF128 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12912 ZNF129 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12914 ZNF130 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12915 ZNF131 zinc finger protein 131 protein-coding gene gene with protein product Approved 5p12 05p12 "ZBTB35|pHZ-10" zinc finger and BTB domain containing 35 zinc finger protein 131 (clone pHZ-10) "Zinc fingers C2H2-type|BTB domain containing" "28|861" 1993-02-11 2006-06-13 2014-11-18 7690 ENSG00000172262 OTTHUMG00000162223 uc063dij.1 U09410 NM_003432 "CCDS43313|CCDS78005" P52739 MGI:1919715 RGD:1307638 ZNF131 604073 +HGNC:12916 ZNF132 zinc finger protein 132 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 pHZ-12 zinc finger protein 132 (clone pHZ-12) Zinc fingers C2H2-type 28 1993-02-11 2006-06-13 2014-11-19 7691 ENSG00000131849 OTTHUMG00000183537 uc002qst.4 U09411 NM_003433 CCDS12980 P52740 7557990 ZNF132 604074 333 +HGNC:12917 ZNF133 zinc finger protein 133 protein-coding gene gene with protein product Approved 20p11.23 20p11.23 "pHZ-13|pHZ-66" ZNF150 "zinc finger protein 150 (pHZ-66)|zinc finger protein 133 (clone pHZ-13)" Zinc fingers C2H2-type 28 1993-02-11 2006-06-13 2014-11-18 7692 ENSG00000125846 OTTHUMG00000031965 uc032pck.2 AK123005 NM_003434 "CCDS13134|CCDS63234|CCDS63235|CCDS74703|CCDS74704|CCDS63233" P52736 "7557990|7649249" RGD:1566283 ZNF133 604075 359 +HGNC:12918 ZNF134 zinc finger protein 134 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 pHZ-15 zinc finger protein 134 (clone pHZ-15) Zinc fingers C2H2-type 28 1993-02-11 2006-06-13 2014-11-19 7693 ENSG00000213762 OTTHUMG00000183471 uc002qpn.3 U09412 NM_003435 CCDS42638 P52741 7557990 ZNF134 604076 417 +HGNC:12919 ZNF135 zinc finger protein 135 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 pHZ-17 "ZNF61|ZNF78L1" "zinc finger protein 61|zinc finger protein 135 (clone pHZ-17)" Zinc fingers C2H2-type 28 1993-02-11 2006-05-12 2016-04-25 7694 ENSG00000176293 OTTHUMG00000160719 uc002qrd.3 U09413 NM_003436 "CCDS12970|CCDS54329|CCDS54330|CCDS74471|CCDS74472" P52742 "7557990|1505991" ZNF135 604077 325 +HGNC:12920 ZNF136 zinc finger protein 136 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 pHZ-20 zinc finger protein 136 (clone pHZ-20) Zinc fingers C2H2-type 28 1993-02-11 2006-06-13 2015-08-26 7695 ENSG00000196646 OTTHUMG00000156429 uc002mti.4 U09367 NM_003437 CCDS32916 P52737 7557990 ZNF136 604078 187 +HGNC:12921 ZNF137P zinc finger protein 137, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 pHZ-30 ZNF137 "zinc finger protein 137 (clone pHZ-30)|zinc finger protein 137|zinc finger protein 137 (pseudogene)" 1993-02-11 2010-08-03 2010-08-03 2016-10-05 7696 ENSG00000123870 OTTHUMG00000154335 U09414 NR_023311 P52743 7557990 604079 273 +HGNC:12922 ZNF138 zinc finger protein 138 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 pHZ-32 zinc finger protein 138 (clone pHZ-32) Zinc fingers C2H2-type 28 1993-02-11 2005-07-11 2016-04-25 7697 ENSG00000197008 OTTHUMG00000156603 uc003ttg.5 U09847 NM_006524 "CCDS34645|CCDS55115|CCDS64659|CCDS64660|CCDS64661|CCDS75607" P52744 ZNF138 604080 451 +HGNC:12925 ZNF140 zinc finger protein 140 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 pHZ-39 zinc finger protein 140 (clone pHZ-39) Zinc fingers C2H2-type 28 1993-02-11 2006-06-13 2015-08-26 7699 ENSG00000196387 OTTHUMG00000167942 uc001ulo.4 U09368 NM_003440 "CCDS9282|CCDS73550" P52738 7557990 ZNF140 604082 80 +HGNC:12926 ZNF141 zinc finger protein 141 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 pHZ-44 D4S90 zinc finger protein 141 (clone pHZ-44) Zinc fingers C2H2-type 28 1993-02-11 2006-06-13 2015-08-26 7700 ENSG00000131127 OTTHUMG00000159852 uc003gaa.3 L15309 NM_003441 CCDS33931 Q15928 8268908 ZNF141 194648 323464 406 +HGNC:12927 ZNF142 zinc finger protein 142 protein-coding gene gene with protein product Approved 2q35 02q35 "KIAA0236|pHZ-49" zinc finger protein 142 (clone pHZ-49) Zinc fingers C2H2-type 28 1993-02-11 2006-06-13 2015-08-26 7701 ENSG00000115568 OTTHUMG00000154736 uc061smv.1 U09849 NM_005081 CCDS42817 P52746 MGI:1924514 RGD:1309648 ZNF142 604083 560 +HGNC:12928 ZNF143 zinc finger protein 143 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "SBF|pHZ-1|STAF" zinc finger protein 143 (clone pHZ-1) Zinc fingers C2H2-type 28 1993-06-07 2006-06-13 2014-11-18 7702 ENSG00000166478 OTTHUMG00000149922 uc001mhr.3 U09850 NM_003442 "CCDS7799|CCDS60720|CCDS60721" P52747 MGI:1277969 RGD:1305662 ZNF143 603433 +HGNC:12931 ZNF146 zinc finger protein 146 protein-coding gene gene with protein product Approved 19q13.1 19q13.1 OZF Zinc fingers C2H2-type 28 1993-11-01 2014-11-19 7705 ENSG00000167635 OTTHUMG00000180511 uc010eeu.4 X70394 NM_007145 CCDS12492 Q15072 "10449921|8641144" MGI:1347092 RGD:7630088 ZNF146 601505 219 +HGNC:12933 ZNF148 zinc finger protein 148 protein-coding gene gene with protein product Approved 3q21.2 03q21.2 "BERF-1|ZBP-89|BFCOL1|HT-BETA|ZFP148|pHZ-52" zinc finger protein 148 (pHZ-52) Zinc fingers C2H2-type 28 1994-03-16 2006-06-13 2015-08-26 7707 ENSG00000163848 OTTHUMG00000159448 uc003ehx.5 U09851 NM_021964 CCDS3031 Q9UQR1 "7557990|9925940" MGI:1332234 RGD:62063 ZNF148 601897 +HGNC:12934 ZNF149 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12937 ZNF152 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12938 ZNF153 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12939 ZNF154 zinc finger protein 154 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 pHZ-92 zinc finger protein 154 (pHZ-92) Zinc fingers C2H2-type 28 1994-03-16 2006-08-22 2016-10-05 7710 ENSG00000179909 OTTHUMG00000140375 uc061dmm.1 U20648 XR_001753757 CCDS42639 Q13106 7557990 ZNF154 604085 315 +HGNC:12940 ZNF155 zinc finger protein 155 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 pHZ-96 zinc finger protein 155 (pHZ-96) Zinc fingers C2H2-type 28 1994-03-16 2006-08-22 2016-01-15 7711 ENSG00000204920 OTTHUMG00000182215 uc031rlg.1 U09852 NM_003445 "CCDS12634|CCDS58668" Q12901 7557990 ZNF155 604086 245 +HGNC:12941 ZNF156 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12942 ZNF157 zinc finger protein 157 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 HZF22 zinc finger protein 157 (HZF22) Zinc fingers C2H2-type 28 1994-04-14 2006-08-22 2016-10-05 7712 ENSG00000147117 OTTHUMG00000021443 uc004dhr.2 U28687 NM_003446 CCDS14278 P51786 8586441 RGD:1359435 ZNF157 300024 519 +HGNC:12943 ZNF158 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-08-30 +HGNC:12944 ZNF159 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-08-30 +HGNC:12948 ZNF160 zinc finger protein 160 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "HZF5|F11|KR18|HKr18|FLJ00032|KIAA1611" Zinc fingers C2H2-type 28 1994-07-04 2015-08-26 90338 ENSG00000170949 OTTHUMG00000182854 uc010eqk.3 X78928 NM_033288 "CCDS12859|CCDS82391|CCDS82392" Q9HCG1 "7774943|7865130" ZNF160 600398 1196 +HGNC:12952 ZNF164 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:12953 ZNF165 zinc finger protein 165 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "ZSCAN7|CT53" cancer/testis antigen 53 Zinc fingers C2H2-type 28 1995-02-17 2016-10-05 7718 ENSG00000197279 OTTHUMG00000014505 uc021yro.2 U78722 NM_003447 CCDS4643 P49910 7490084 ZNF165 600834 427 +HGNC:12957 ZNF169 zinc finger protein 169 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 MGC51961 Zinc fingers C2H2-type 28 1995-04-24 2014-11-19 169841 ENSG00000175787 OTTHUMG00000020264 uc004aum.2 U28322 NM_194320 CCDS6709 Q14929 "9186526|9071574" MGI:1915161 RGD:1304631 ZNF169 603404 499 +HGNC:12959 ZNF170 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-08-30 +HGNC:12960 ZNF171 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:12961 ZNF172 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:12963 ZNF174 zinc finger protein 174 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 ZSCAN8 Zinc fingers C2H2-type 28 1995-07-11 2016-10-05 7727 ENSG00000103343 OTTHUMG00000129358 uc002cvc.5 U31248 NM_003450 "CCDS10504|CCDS32380" Q15697 MGI:2686600 RGD:7498198 ZNF174 603900 105 +HGNC:12964 ZNF175 zinc finger protein 175 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 OTK18 Zinc fingers C2H2-type 28 1995-12-12 2016-10-05 7728 ENSG00000105497 OTTHUMG00000167771 uc002pxb.4 D50419 NM_007147 CCDS12837 Q9Y473 8838321 MGI:1917180 RGD:7510716 ZNF175 601139 261 +HGNC:12966 ZNF177 zinc finger protein 177 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Zinc fingers C2H2-type 28 1995-09-11 2015-08-26 7730 ENSG00000188629 OTTHUMG00000179943 uc002mlk.4 "U37263|BC012012" NM_003451 "CCDS12212|CCDS54214" Q13360 ZNF177 601276 173 +HGNC:12970 ZNF180 zinc finger protein 180 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 HHZ168 zinc finger protein 180 (HHZ168) Zinc fingers C2H2-type 28 1995-11-22 2006-08-22 2014-11-18 7733 ENSG00000167384 OTTHUMG00000180495 uc002ozf.6 AF192913 NM_013256 "CCDS12639|CCDS62707|CCDS62708" Q9UJW8 MGI:1923701 RGD:631380 ZNF180 606740 258 +HGNC:12971 ZNF181 zinc finger protein 181 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "HHZ181|MGC44316" zinc finger protein 181 (HHZ181) Zinc fingers C2H2-type 28 1995-11-22 2006-04-27 2016-10-05 339318 ENSG00000197841 OTTHUMG00000157508 uc002nvu.4 "BC104759|H54888" NM_001029997 "CCDS32990|CCDS46043" Q2M3W8 ZNF181 606741 752 +HGNC:13001 ZNF182 zinc finger protein 182 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "KOX14|HHZ150|Zfp182" ZNF21 "zinc finger protein 182 (HHZ150)|zinc finger protein 21 (KOX 14)" Zinc fingers C2H2-type 28 1990-06-13 2006-05-10 2006-05-10 2015-08-26 7569 ENSG00000147118 OTTHUMG00000021460 uc004dit.4 "AK122874|R98366" NM_006962 "CCDS35235|CCDS35236" P17025 "8088786|2014798|8914609" MGI:2442220 RGD:6490591 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF182 ZNF182 314993 567 +HGNC:12973 ZNF182L entry withdrawn withdrawn withdrawn Entry Withdrawn 2007-07-06 +HGNC:12975 ZNF184 zinc finger protein 184 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 zinc finger protein 184 (Kruppel-like) Zinc fingers C2H2-type 28 1996-11-15 2006-06-28 2016-10-05 7738 ENSG00000096654 OTTHUMG00000014478 uc003nji.4 U66561 NM_007149 CCDS4624 Q99676 MGI:1922244 RGD:1304798 ZNF184 602277 426 +HGNC:12976 ZNF185 zinc finger protein 185 (LIM domain) protein-coding gene gene with protein product Approved Xq28 Xq28 SCELL sciellin like LIM domain containing 1218 1996-12-12 2016-02-16 7739 ENSG00000147394 OTTHUMG00000024187 uc010ntv.3 AK056517 NM_007150 "CCDS48184|CCDS55528|CCDS55529|CCDS55530|CCDS55531|CCDS55532|CCDS69832" O15231 9268636 MGI:108095 RGD:1586351 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF185 ZNF185 300381 +HGNC:13988 ZNF187P1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-08-30 +HGNC:12979 ZNF188 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:12980 ZNF189 zinc finger protein 189 protein-coding gene gene with protein product Approved 9q31.1 09q31.1 Zinc fingers C2H2-type 28 1996-12-12 2016-10-05 7743 ENSG00000136870 OTTHUMG00000020383 uc004bbh.3 AF025770 NM_003452 "CCDS6754|CCDS6755|CCDS65096|CCDS75867" O75820 9653648 MGI:2444707 RGD:1306510 ZNF189 603132 502 +HGNC:18777 ZNF192P1 zinc finger protein 192 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "dJ265C24.4|ZNF389P" zinc finger protein 389, pseudogene ZNF389 zinc finger protein 389 2004-01-16 2011-08-31 2011-08-31 2012-10-05 651302 ENSG00000226314 OTTHUMG00000014513 NR_103448 1084 +HGNC:42862 ZNF192P2 zinc finger protein 192 pseudogene 2 pseudogene pseudogene Approved 6p22.1 06p22.1 2011-08-31 2011-08-31 222701 ENSG00000218016 OTTHUMG00000014514 NG_006136 PGOHUM00000243544 +HGNC:12985 ZNF194 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:12986 ZNF195 zinc finger protein 195 protein-coding gene gene with protein product Approved 11p15.5 11p15.5 Zinc fingers C2H2-type 28 1997-07-22 2015-08-26 7748 ENSG00000005801 OTTHUMG00000011694 uc001lxs.4 XM_017018260 "CCDS41604|CCDS44521|CCDS44522|CCDS55736|CCDS55737|CCDS58111" O14628 9344677 ZNF195 602187 52 +HGNC:12987 ZNF196 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:12988 ZNF197 zinc finger protein 197 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "P18|D3S1363E|ZKSCAN9|ZSCAN41" ZNF166 zinc finger protein 166 Zinc fingers C2H2-type 28 1999-09-29 2003-10-07 2016-10-05 10168 ENSG00000186448 OTTHUMG00000133089 uc003cnm.4 AF011573 NM_006991 "CCDS2717|CCDS33743" O14709 "9380504|8353497" ZNF197 388 +HGNC:40620 ZNF197-AS1 ZNF197 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p21.31 03p21.31 ZNF197 antisense RNA 1 (non-protein coding) 2011-07-07 2012-08-15 2014-11-19 100874094 ENSG00000233509 OTTHUMG00000156308 uc062ivj.1 NR_046658 +HGNC:12990 ZNF199 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:12993 ZNF200 zinc finger protein 200 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Zinc fingers C2H2-type 28 1997-08-28 2014-11-19 7752 ENSG00000010539 OTTHUMG00000129317 uc002cuk.2 AF060866 XM_017023647 "CCDS10497|CCDS42112|CCDS45395" P98182 "9288094|9787081" ZNF200 603231 101 +HGNC:12994 ZNF202 zinc finger protein 202 protein-coding gene gene with protein product Approved 11q23.3 11q23.3 "ZKSCAN10|ZSCAN42" Zinc fingers C2H2-type 28 1997-10-16 2014-11-19 7753 ENSG00000166261 OTTHUMG00000166008 uc001pze.2 AF027219 NM_003455 CCDS8443 O95125 9790754 MGI:1933401 RGD:1562294 ZNF202 603430 482 +HGNC:12995 ZNF204P zinc finger protein 204, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 "b24o18.1|ZNF184-Lp" "ZNF204|ZNF315P" "zinc finger protein 204|zinc finger protein 204 (pseudogene)|zinc finger protein 315, pseudogene|zinc finger protein 315 pseudogene|zinc finger protein 315 (pseudogene)" 1997-11-20 2009-11-20 2010-08-03 2016-10-05 7754 ENSG00000204789 OTTHUMG00000016415 AF033199 NR_002722 9628832 603282 1027 +HGNC:12996 ZNF205 zinc finger protein 205 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 Zfp13 ZNF210 Zinc fingers C2H2-type 28 1998-01-16 2014-11-19 7755 ENSG00000122386 OTTHUMG00000148676 uc002cua.4 AF060865 NM_003456 CCDS10494 O95201 9787081 MGI:99159 RGD:1304577 ZNF205 603436 99 +HGNC:28586 ZNF205-AS1 ZNF205 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 MGC3771 2012-11-06 2012-11-06 81854 ENSG00000263214 OTTHUMG00000177517 NR_024166 12477932 +HGNC:12998 ZNF207 zinc finger protein 207 protein-coding gene gene with protein product Approved 17q11.2 17q11.2 Zinc fingers C2H2-type 28 1998-02-09 2014-11-19 7756 ENSG00000010244 OTTHUMG00000132810 uc002hhh.5 AF046001 XM_017025019 "CCDS11271|CCDS32614|CCDS42294" O43670 9799612 MGI:1340045 RGD:1308121 ZNF207 603428 +HGNC:12999 ZNF208 zinc finger protein 208 protein-coding gene gene with protein product Approved 19p12 19p12 "PMIDP|ZNF95" zinc finger protein 95 Zinc fingers C2H2-type 28 1998-03-10 2015-08-26 7757 ENSG00000160321 OTTHUMG00000182913 uc060wic.1 BC038199 NM_007153 CCDS54240 O43345 9724325 MGI:1917477 ZNF208 603977 207 +HGNC:13000 ZNF209P zinc finger protein 209, pseudogene pseudogene pseudogene Approved 19p12 19p12 ZNF209 zinc finger protein 209 (pseudogene) 1998-03-16 2009-11-20 2010-08-03 2015-11-03 441843 ENSG00000269138 OTTHUMG00000182979 NG_021760 9724325 PGOHUM00000295294 1055 +HGNC:13003 ZNF211 zinc finger protein 211 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 "ZNF-25|CH2H2-25" Zinc fingers C2H2-type 28 1999-09-29 2014-11-18 10520 ENSG00000121417 OTTHUMG00000168012 uc031rng.2 U38904 NM_001265597 "CCDS12956|CCDS12957|CCDS58686|CCDS58687|CCDS58688|CCDS74468" Q13398 "7633419|9096115" ZNF211 601856 312 +HGNC:13004 ZNF212 zinc finger protein 212 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 C2H2-150 Zinc fingers C2H2-type 28 1999-09-29 2014-11-19 7988 ENSG00000170260 OTTHUMG00000158968 uc003wfp.3 U38864 NM_012256 CCDS5896 Q9UDV6 9169157 MGI:2682609 RGD:1307836 ZNF212 602386 467 +HGNC:13005 ZNF213 zinc finger protein 213 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "CR53|ZKSCAN21|ZSCAN53" Zinc fingers C2H2-type 28 1998-03-23 2007-02-20 2007-02-20 2014-11-19 7760 ENSG00000085644 OTTHUMG00000177519 uc059pvx.1 AF017433 NM_004220 CCDS10495 O14771 "9653642|10023065" MGI:3053094 RGD:1305919 ZNF213 608387 100 +HGNC:50505 ZNF213-AS1 ZNF213 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 16p13.3 16p13.3 2014-05-13 2014-05-13 2014-05-13 100507458 ENSG00000263072 OTTHUMG00000177518 NR_110900 +HGNC:13006 ZNF214 zinc finger protein 214 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 Zinc fingers C2H2-type 28 1998-03-23 2014-11-19 7761 ENSG00000149050 OTTHUMG00000165618 uc001mfa.3 AF056617 XM_011520355 CCDS31418 Q9UL59 ZNF214 605015 588 +HGNC:13007 ZNF215 zinc finger protein 215 protein-coding gene gene with protein product Approved 11p15.4 11p15.4 "ZKSCAN11|ZSCAN43" Zinc fingers C2H2-type 28 1998-03-23 2014-11-19 7762 ENSG00000149054 OTTHUMG00000165507 uc001mey.4 AF056618 XM_006718311 CCDS7775 Q9UL58 ZNF215 605016 53 +HGNC:13009 ZNF217 zinc finger protein 217 protein-coding gene gene with protein product Approved 20q13.2 20q13.2 ZABC1 Zinc fingers C2H2-type 28 1998-08-13 2014-11-19 7764 ENSG00000171940 OTTHUMG00000032764 uc002xwq.5 AF041259 NM_006526 CCDS13443 O75362 9671742 MGI:2685408 RGD:1308451 ZNF217 602967 +HGNC:13011 ZNF219 zinc finger protein 219 protein-coding gene gene with protein product Approved 14q11 14q11 Zinc fingers C2H2-type 28 2000-07-31 2014-11-18 51222 ENSG00000165804 OTTHUMG00000029647 uc010aik.2 AB015427 XM_017021354 CCDS9568 Q9P2Y4 10819330 MGI:1917140 RGD:1359259 ZNF219 605036 +HGNC:13014 ZNF221 zinc finger protein 221 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 Zinc fingers C2H2-type 28 1998-08-13 2015-09-09 7638 ENSG00000159905 OTTHUMG00000182214 uc002oxx.3 AF187987 XM_017027232 CCDS12633 Q9UK13 ZNF221 244 +HGNC:13015 ZNF222 zinc finger protein 222 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 Zinc fingers C2H2-type 28 1998-08-13 2015-08-27 7673 ENSG00000159885 OTTHUMG00000182309 uc002oyc.4 AF187988 XM_005259208 "CCDS33045|CCDS46098" Q9UK12 ZNF222 247 +HGNC:13016 ZNF223 zinc finger protein 223 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 Zinc fingers C2H2-type 28 1998-08-13 2015-08-27 7766 ENSG00000178386 OTTHUMG00000182311 uc002oyf.2 AF187989 XM_017027258 CCDS12635 Q9UK11 ZNF223 248 +HGNC:13017 ZNF224 zinc finger protein 224 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "BMZF-2|KOX22" "ZNF255|ZNF27" "zinc finger protein 255|zinc finger protein 27" Zinc fingers C2H2-type 28 1998-08-13 2004-02-13 2015-09-09 7767 ENSG00000267680 OTTHUMG00000182313 uc002oyh.3 AF187990 NM_013398 CCDS33046 Q9NZL3 ZNF224 194555 634 +HGNC:13018 ZNF225 zinc finger protein 225 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 Zinc fingers C2H2-type 28 1998-08-13 2015-08-27 7768 ENSG00000256294 OTTHUMG00000182336 uc002oyj.2 AF187991 NM_013362 CCDS46100 Q9UK10 ZNF225 250 +HGNC:13019 ZNF226 zinc finger protein 226 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 Zinc fingers C2H2-type 28 1998-08-13 2012-09-11 2012-09-11 2015-09-09 7769 ENSG00000167380 OTTHUMG00000182351 uc002oyp.4 AF024707 XM_006723367 "CCDS46102|CCDS46103" Q9NYT6 MGI:1929114 ZNF226 1175 +HGNC:13020 ZNF227 zinc finger protein 227 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 Zinc fingers C2H2-type 28 1998-08-13 2015-08-27 7770 ENSG00000131115 OTTHUMG00000182352 uc002oyv.5 AK092253 NM_182490 "CCDS12636|CCDS74388" Q86WZ6 ZNF227 253 +HGNC:13022 ZNF229 zinc finger protein 229 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 Zinc fingers C2H2-type 28 1998-08-13 2014-11-19 7772 ENSG00000278318 OTTHUMG00000182377 uc032hzj.2 AF192979 NM_014518 "CCDS42574|CCDS62706" Q9UJW7 ZNF229 635 +HGNC:13024 ZNF230 zinc finger protein 230 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 FDZF2 Zinc fingers C2H2-type 28 1998-08-13 2015-09-09 7773 ENSG00000159882 OTTHUMG00000182307 uc002oyb.2 U95044 NM_006300 CCDS33044 Q9UIE0 ZNF230 246 +HGNC:13026 ZNF232 zinc finger protein 232 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 ZSCAN11 Zinc fingers C2H2-type 28 1998-08-06 2014-11-19 7775 ENSG00000167840 OTTHUMG00000099450 uc002gat.4 AF080169 NM_014519 "CCDS11068|CCDS82043" Q9UNY5 11311944 ZNF232 616463 134 +HGNC:30946 ZNF233 zinc finger protein 233 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 FLJ38032 Zinc fingers C2H2-type 28 2005-01-07 2015-09-09 353355 ENSG00000159915 OTTHUMG00000182354 uc002oyz.3 AY166792 NM_181756 "CCDS33047|CCDS82363" A6NK53 12743021 ZNF233 254 +HGNC:13027 ZNF234 zinc finger protein 234 protein-coding gene gene with protein product Approved 19q13 19q13 HZF4 ZNF269 Zinc fingers C2H2-type 28 1999-07-29 2015-08-27 10780 ENSG00000263002 OTTHUMG00000182337 uc002oym.4 X78927 XM_017026149 CCDS46101 Q14588 7865130 ZNF234 604750 251 +HGNC:12866 ZNF235 zinc finger protein 235 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 "HZF6|ANF270" "ZNF270|ZFP93" zinc finger protein homologous to Zfp93 in mouse Zinc fingers C2H2-type 28 1999-07-19 2002-11-08 2002-11-04 2015-08-27 9310 ENSG00000159917 OTTHUMG00000182353 uc002oza.5 X78929 XM_005259412 CCDS33048 Q14590 "7865130|9570955" MGI:1929117 RGD:620595 ZNF235 604749 255 +HGNC:13028 ZNF236 zinc finger protein 236 protein-coding gene gene with protein product Approved 18q22-q23 18q22-q23 Zinc fingers C2H2-type 28 1998-08-26 2015-08-27 7776 ENSG00000130856 OTTHUMG00000179331 uc002lmi.4 AF085243 XM_011526165 "CCDS42447|CCDS77201" Q9UL36 10458916 MGI:1926950 RGD:1309670 ZNF236 604760 +HGNC:13031 ZNF239 zinc finger protein 239 protein-coding gene gene with protein product Approved 10q11.22-q11.23 10q11.22-q11.23 "MOK2|HOK-2" Zinc fingers C2H2-type 28 1998-11-06 2014-11-19 8187 ENSG00000196793 OTTHUMG00000018033 uc009xmk.4 X82125 NM_001324351 CCDS41502 Q16600 "8903737|8587123" MGI:1306812 RGD:6502210 ZNF239 601069 45 +HGNC:13033 ZNF240 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:13034 ZNF241 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:13035 ZNF242 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:13037 ZNF244 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:13038 ZNF245 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:13039 ZNF246 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:13040 ZNF247 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:13041 ZNF248 zinc finger protein 248 protein-coding gene gene with protein product Approved 10p11.21 10p11.21 bA162G10.3 Zinc fingers C2H2-type 28 1998-11-30 2015-08-26 57209 ENSG00000198105 OTTHUMG00000017980 uc010qeu.2 AJ491695 NM_021045 "CCDS7194|CCDS58077|CCDS73087" Q8NDW4 12566394 MGI:1919970 RGD:1561270 ZNF248 41 +HGNC:13042 ZNF249 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-13 +HGNC:13044 ZNF250 zinc finger protein 250 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 "MGC9718|ZFP647" ZNF647 zinc finger protein 647 Zinc fingers C2H2-type 28 1998-11-30 2004-11-08 2015-01-12 58500 ENSG00000196150 OTTHUMG00000165252 uc003zeq.4 AK095705 NM_021061 "CCDS34972|CCDS55282" P15622 20346131 MGI:3052806 RGD:1308203 ZNF250 492 +HGNC:13045 ZNF251 zinc finger protein 251 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 Zinc fingers C2H2-type 28 1998-11-30 2015-08-27 90987 ENSG00000198169 OTTHUMG00000165189 uc003zdv.5 AK000435 NM_138367 CCDS47944 Q9BRH9 MGI:1918841 RGD:1311138 ZNF251 675 +HGNC:13046 ZNF252P zinc finger protein 252, pseudogene pseudogene pseudogene Approved 8q24.3 08q24.3 ZNF252 zinc finger protein 252 1998-11-30 2012-04-19 2012-04-19 2012-10-05 286101 ENSG00000196922 OTTHUMG00000165201 BC019922 NR_023392 ZNF252P 676 +HGNC:27821 ZNF252P-AS1 ZNF252P antisense RNA 1 non-coding RNA RNA, long non-coding Approved 8q24.3 08q24.3 C8orf77 "chromosome 8 open reading frame 77|ZNF252P antisense RNA 1 (non-protein coding)" 2005-10-06 2012-05-01 2012-08-15 2012-10-12 286103 ENSG00000255559 OTTHUMG00000165204 uc003zfb.5 AK092777 NR_026974 Q0IIN9 12477932 +HGNC:13497 ZNF253 zinc finger protein 253 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 "BMZF-1|FLJ90391" ZNF411 zinc finger protein 411 Zinc fingers C2H2-type 28 2001-08-23 2003-12-17 2016-10-05 56242 ENSG00000256771 OTTHUMG00000182369 uc002noj.4 AF038951 NM_021047 CCDS42532 O75346 10585455 MGI:107769 ZNF253 606954 198 +HGNC:13047 ZNF254 zinc finger protein 254 protein-coding gene gene with protein product Approved 19p13 19p13 "HD-ZNF1|BMZF-5" "ZNF91L|ZNF539" zinc finger protein 539 Zinc fingers C2H2-type 28 1999-05-28 2014-11-18 9534 ENSG00000213096 OTTHUMG00000183394 uc002nru.5 AF054180 NM_004876 "CCDS32983|CCDS62622|CCDS62623|CCDS74323|CCDS74324" O75437 9653160 ZNF254 604768 212 +HGNC:13049 ZNF256 zinc finger protein 256 protein-coding gene gene with protein product Approved 19q13 19q13 BMZF-3 Zinc fingers C2H2-type 28 1999-07-30 2014-11-19 10172 ENSG00000152454 OTTHUMG00000183449 uc002qqu.4 AF067165 XM_017026138 CCDS12966 Q9Y2P7 ZNF256 606956 322 +HGNC:13498 ZNF257 zinc finger protein 257 protein-coding gene gene with protein product Approved 19p12 19p12 BMZF-4 Zinc fingers C2H2-type 28 2001-08-23 2014-11-19 113835 ENSG00000197134 OTTHUMG00000182927 uc010ecx.4 AF070651 NM_001316998 CCDS46030 Q9Y2Q1 10585455 ZNF257 606957 208 +HGNC:13052 ZNF259P1 zinc finger protein 259 pseudogene 1 pseudogene pseudogene Approved 6q21 06q21 354J5 ZNF259P zinc finger protein 259, pseudogene 1999-02-15 2009-11-20 2009-11-20 2012-10-05 442240 ENSG00000219565 OTTHUMG00000016136 Z95118 NG_009460 PGOHUM00000243320 +HGNC:13499 ZNF260 zinc finger protein 260 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "ozrf1|Zfp260" Zinc fingers C2H2-type 28 2006-06-30 2014-11-19 339324 ENSG00000254004 OTTHUMG00000048155 uc002oef.3 AK122854 NM_001012756 CCDS33003 Q3ZCT1 MGI:1347071 RGD:621205 ZNF260 613749 754 +HGNC:13056 ZNF263 zinc finger protein 263 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FPM315|ZKSCAN12|ZSCAN44" Zinc fingers C2H2-type 28 1999-06-11 2015-08-26 10127 ENSG00000006194 OTTHUMG00000129323 uc002cuq.4 AC004232 XM_006720834 CCDS10499 O14978 9256059 MGI:1921370 RGD:1307301 ZNF263 604191 102 +HGNC:13057 ZNF264 zinc finger protein 264 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 KIAA0412 Zinc fingers C2H2-type 28 1999-06-11 2014-11-19 9422 ENSG00000083844 OTTHUMG00000183104 uc002qob.3 AB007872 XM_011527522 CCDS33127 O43296 9455477 ZNF264 604668 126 +HGNC:13059 ZNF266 zinc finger protein 266 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 HZF1 Zinc fingers C2H2-type 28 1999-07-19 2015-09-14 10781 ENSG00000174652 OTTHUMG00000179945 uc010dwq.5 X78924 XM_017026154 CCDS12213 Q14584 7865130 MGI:1924769 ZNF266 604751 174 +HGNC:13060 ZNF267 zinc finger protein 267 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 HZF2 Zinc fingers C2H2-type 28 1999-07-19 2014-11-19 10308 ENSG00000185947 OTTHUMG00000176535 uc002ecs.6 X78925 NM_003414 CCDS32440 Q14586 7865130 MGI:1098769 ZNF267 604752 119 +HGNC:13061 ZNF268 zinc finger protein 268 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 HZF3 Zinc fingers C2H2-type 28 1999-07-19 2013-01-08 10795 ENSG00000090612 OTTHUMG00000167946 uc010tcf.3 X78926 NM_152943 "CCDS45012|CCDS53851|CCDS53852|CCDS53853|CCDS53854|CCDS59239|CCDS59240" Q14587 7865130 MGI:3651014 ZNF268 604753 82 +HGNC:13065 ZNF271P zinc finger protein 271, pseudogene pseudogene pseudogene Approved 18q12.2 18q12.2 "HZF7|ZNFEB" ZNF271 zinc finger protein 271 Zinc fingers C2H2-type 28 1999-07-19 2014-10-10 2014-10-10 2014-11-19 10778 ENSG00000257267 OTTHUMG00000132563 X78930 NR_024565 "7865130|11777961" 604754 152 +HGNC:13067 ZNF273 zinc finger protein 273 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 HZF9 Zinc fingers C2H2-type 28 1999-07-19 2014-11-19 10793 ENSG00000198039 OTTHUMG00000149837 uc003tto.4 X78932 XM_017011688 CCDS5528 Q14593 7865130 ZNF273 604756 452 +HGNC:13068 ZNF274 zinc finger protein 274 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "ZKSCAN19|ZSCAN51" Zinc fingers C2H2-type 28 1999-07-19 2014-11-18 10782 ENSG00000171606 OTTHUMG00000183456 uc032igq.2 AB029149 NM_133502 "CCDS74473|CCDS74474|CCDS74475|CCDS74476" Q96GC6 10777669 MGI:1890378 RGD:1306339 ZNF274 605467 327 +HGNC:13069 ZNF275 zinc finger protein 275 protein-coding gene gene with protein product Approved Xq28 Xq28 Zinc fingers C2H2-type 28 1999-07-22 2014-11-19 10838 ENSG00000063587 OTTHUMG00000067450 uc065bsr.1 BC041602 NM_001080485 CCDS48188 Q9NSD4 MGI:1350985 RGD:1564630 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF275 ZNF275 1112 +HGNC:23330 ZNF276 zinc finger protein 276 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 "MGC45417|ZNF477|CENPZ|CENP-Z|ZADT" "centromere protein Z|zinc finger, AD-type" ZFP276 zinc finger protein 276 homolog (mouse) Zinc fingers C2H2-type 28 2003-11-07 2006-02-10 2006-02-10 2014-11-19 92822 ENSG00000158805 OTTHUMG00000138050 uc002foq.5 AK026482 NM_152287 "CCDS10986|CCDS45554" Q8N554 "10936049|20813266" MGI:1888495 RGD:1307469 ZNF276 608460 +HGNC:13070 ZNF277 zinc finger protein 277 protein-coding gene gene with protein product Approved 7q31.1 07q31.1 NRIF4 ZNF277P "zinc finger protein (C2H2 type) 277|zinc finger protein 277 pseudogene" 1999-09-07 2007-10-23 2007-10-23 2014-11-19 11179 ENSG00000198839 OTTHUMG00000150209 uc003vge.3 AF209198 NM_021994 CCDS5755 Q9NRM2 "10860669|16213364|16395595" MGI:1890393 RGD:1583856 ZNF277 605465 +HGNC:18597 ZNF280A zinc finger protein 280A protein-coding gene gene with protein product Approved 22q11.22 22q11.22 "3'OY11.1|ZNF636" "ZNF280|SUHW1" "zinc finger protein 280|suppressor of hairy wing homolog 1 (Drosophila)" 2002-04-29 2007-09-20 2007-09-20 2016-10-05 129025 ENSG00000169548 OTTHUMG00000030545 uc032qhw.1 D87009 NM_080740 CCDS13800 P59817 9074928 ZNF280A +HGNC:23022 ZNF280B zinc finger protein 280B protein-coding gene gene with protein product Approved 22q11.22 22q11.22 "5'OY11.1|ZNF632" "ZNF279|SUHW2" "zinc finger protein 279|suppressor of hairy wing homolog 2 (Drosophila)" 2003-08-19 2007-09-20 2007-09-20 2016-10-05 140883 ENSG00000275004 OTTHUMG00000151066 uc062cby.1 AK097608 NM_080764 CCDS13799 Q86YH2 9074928 MGI:1927865 RGD:1565460 ZNF280B +HGNC:25955 ZNF280C zinc finger protein 280C protein-coding gene gene with protein product Approved Xq26.1 Xq26.1 "FLJ20095|ZNF633" SUHW3 suppressor of hairy wing homolog 3 (Drosophila) 2004-06-02 2007-09-20 2007-09-20 2016-10-05 55609 ENSG00000056277 OTTHUMG00000022393 uc004evm.4 AL834333 NM_017666 CCDS14622 Q8ND82 12477932 MGI:2387585 RGD:1564669 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF280C ZNF280C +HGNC:25953 ZNF280D zinc finger protein 280D protein-coding gene gene with protein product Approved 15q21.2 15q21.2 "FLJ20086|ZNF634" SUHW4 suppressor of hairy wing homolog 4 (Drosophila) 2004-06-02 2007-09-20 2007-09-20 2015-09-08 54816 ENSG00000137871 OTTHUMG00000172509 uc002adu.5 AB046804 XM_370867 "CCDS32245|CCDS42041|CCDS58364" Q6N043 10997877 MGI:2384583 RGD:1560796 ZNF280D +HGNC:13075 ZNF281 zinc finger protein 281 protein-coding gene gene with protein product Approved 1q32.1 01q32.1 ZBP-99 Zinc fingers C2H2-type 28 2000-01-31 2014-11-19 23528 ENSG00000162702 OTTHUMG00000035724 uc001gve.5 AF125158 NM_012482 "CCDS1402|CCDS60384" Q9Y2X9 10448078 MGI:3029290 RGD:1305139 ZNF281 27 +HGNC:13076 ZNF282 zinc finger protein 282 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 HUB1 Zinc fingers C2H2-type 28 2000-03-22 2015-08-27 8427 ENSG00000170265 OTTHUMG00000158974 uc033apc.1 D30612 NM_003575 "CCDS5895|CCDS78284" Q9UDV7 9396811 MGI:2141413 RGD:1306278 ZNF282 603397 466 +HGNC:13077 ZNF283 zinc finger protein 283 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 Zinc fingers C2H2-type 28 1999-12-17 2014-11-18 284349 ENSG00000167637 OTTHUMG00000182186 uc002oxr.5 AK098175 NM_181845 "CCDS46097|CCDS74387" Q8N7M2 12743021 RGD:2318713 ZNF283 631 +HGNC:13078 ZNF284 zinc finger protein 284 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 DKFZp781F1775 Zinc fingers C2H2-type 28 1999-12-17 2014-11-19 342909 ENSG00000186026 OTTHUMG00000182312 uc002oyg.2 AY166789 NM_001037813 CCDS46099 Q2VY69 12743021 ZNF284 633 +HGNC:13079 ZNF285 zinc finger protein 285 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 ZNF285A zinc finger protein 285A Zinc fingers C2H2-type 28 1999-12-17 2010-04-14 2010-04-14 2014-11-18 26974 ENSG00000267508 OTTHUMG00000178848 uc002ozd.5 AK055309 NM_152354 "CCDS12638|CCDS74389" Q96NJ3 ZNF285 257 +HGNC:33262 ZNF285B zinc finger protein 285B (pseudogene) pseudogene pseudogene Approved 19q13.31 19q13.31 zinc finger protein 285B 2007-01-18 2016-01-06 2016-01-06 147711 ENSG00000176761 OTTHUMG00000176423 XR_016906 PGOHUM00000295387 757 +HGNC:13501 ZNF286A zinc finger protein 286A protein-coding gene gene with protein product Approved 17p12 17p12 KIAA1874 ZNF286 zinc finger protein 286 Zinc fingers C2H2-type 28 2001-09-20 2007-01-05 2007-01-05 2016-10-05 57335 ENSG00000187607 OTTHUMG00000166448 uc010vwa.3 AF217226 NM_020652 "CCDS11172|CCDS73997" Q9HBT8 11347906 MGI:2384758 RGD:1561950 ZNF286A 138 +HGNC:33241 ZNF286B zinc finger protein 286B protein-coding gene gene with protein product Approved 17p11.2 17p11.2 ZNF590 zinc finger protein 590 "ZNF286L|ZNF286C" "zinc finger protein 286-like|zinc finger 286C pseudogene" Zinc fingers C2H2-type 28 2007-01-05 2015-09-08 729288 ENSG00000249459 OTTHUMG00000178136 uc010vyd.3 XM_001723047 CCDS58523 P0CG31 ZNF286B 1130 +HGNC:13502 ZNF287 zinc finger protein 287 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 "ZKSCAN13|ZSCAN45" Zinc fingers C2H2-type 28 2001-09-20 2014-11-19 57336 ENSG00000141040 OTTHUMG00000058993 uc002gqi.3 AF217227 XM_011523968 CCDS11179 Q9HBT7 MGI:2176561 RGD:1308617 ZNF287 139 +HGNC:18410 ZNF292 zinc finger protein 292 protein-coding gene gene with protein product Approved 6q14.3 06q14.3 "KIAA0530|ZFP292|bA393I2.3|Zn-15|Zn-16" Zinc fingers C2H2-type 28 2002-10-07 2016-10-05 23036 ENSG00000188994 OTTHUMG00000015164 uc003plm.5 AB011102 NM_015021 CCDS47457 O60281 9628581 MGI:1353423 RGD:61931 ZNF292 616213 +HGNC:23130 ZNF295-AS1 ZNF295 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 21q22.3 21q22.3 PRED87 "C21orf121|NCRNA00318" "chromosome 21 open reading frame 121|non-protein coding RNA 318|ZNF295 antisense RNA 1 (non-protein coding)" 2003-10-01 2011-08-11 2012-08-15 2014-11-19 150142 ENSG00000237232 OTTHUMG00000086787 uc062ajz.1 NR_027273 Q8N0V1 +HGNC:15981 ZNF296 zinc finger protein 296 protein-coding gene gene with protein product Approved 19q13.32 19q13.32 ZNF342 zinc finger protein 342 Zinc fingers C2H2-type 28 2001-07-02 2008-06-24 2008-06-24 2015-08-27 162979 ENSG00000170684 OTTHUMG00000181766 uc002pao.4 BC019352 NM_145288 CCDS12653 Q8WUU4 "11063263|14633674" MGI:1926956 RGD:1595818 ZNF296 613226 +HGNC:13088 ZNF299P zinc finger protein 299, pseudogene pseudogene pseudogene Approved 21q21.2 21q21.2 "ZNF299|ZNF299P1" "zinc finger protein 299|zinc finger protein 299 pseudogene 1" 2000-05-23 2010-08-04 2010-08-04 2016-10-05 54012 ENSG00000219368 OTTHUMG00000078250 NG_000898 PGOHUM00000239051 1013 +HGNC:13091 ZNF300 zinc finger protein 300 protein-coding gene gene with protein product Approved 5q33.1 05q33.1 Zinc fingers C2H2-type 28 2000-05-23 2014-11-19 91975 ENSG00000145908 OTTHUMG00000130076 uc021yfy.1 AF395541 NM_052860 "CCDS4311|CCDS54939|CCDS54940" Q96RE9 14746915 ZNF300 612429 416 +HGNC:27032 ZNF300P1 zinc finger protein 300 pseudogene 1 pseudogene pseudogene Approved 5q33.1 05q33.1 zinc finger protein 300 pseudogene 1 (functional) Transcribed pseudogenes with published function 859 2010-07-23 2016-01-29 2016-08-17 134466 ENSG00000197083 OTTHUMG00000154830 AK096536 NR_026867 24393131 PGOHUM00000300788 1019 +HGNC:13092 ZNF301 entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-16 +HGNC:13848 ZNF302 zinc finger protein 302 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 "ZNF327|ZNF135L|ZNF140L" Zinc fingers C2H2-type 28 2001-09-20 2016-10-05 55900 ENSG00000089335 OTTHUMG00000163329 uc002nvq.3 AF155656 XM_017026978 "CCDS46042|CCDS74330|CCDS74331|CCDS74332|CCDS74333" Q9NR11 ZNF302 214 +HGNC:13505 ZNF304 zinc finger protein 304 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 Zinc fingers C2H2-type 28 2000-09-19 2014-11-18 57343 ENSG00000131845 OTTHUMG00000183245 uc061djc.1 AJ276316 XM_011527145 "CCDS12950|CCDS74462|CCDS77365" Q9HCX3 ZNF304 613840 302 +HGNC:13847 ZNF311 zinc finger protein 311 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 Zinc fingers C2H2-type 28 2003-05-28 2016-10-05 282890 ENSG00000197935 OTTHUMG00000031292 uc011idy.2 AL833166 XM_212581 CCDS34357 Q5JNZ3 ZNF311 667 +HGNC:13843 ZNF316 zinc finger protein 316 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 "MZF-3|ENST00000305834" Zinc fingers C2H2-type 28 2004-06-08 2014-08-13 100131017 ENSG00000205903 OTTHUMG00000151854 uc021zzj.3 NM_001278559 CCDS75563 A6NFI3 MGI:1860402 RGD:1311647 1089 +HGNC:13507 ZNF317 zinc finger protein 317 protein-coding gene gene with protein product Approved 19p13 19p13 Zinc fingers C2H2-type 28 2001-07-13 2014-11-19 57693 ENSG00000130803 OTTHUMG00000179932 uc002mku.4 AF275255 NM_020933 "CCDS12210|CCDS54213" Q96PQ6 "10997877|11688974" MGI:107775 RGD:1565419 ZNF317 613864 171 +HGNC:31062 ZNF317P1 zinc finger protein 317 pseudogene 1 pseudogene pseudogene Approved 8q22.1 08q22.1 2005-10-06 2014-11-19 100288659 ENSG00000253781 OTTHUMG00000164237 NG_022426 PGOHUM00000249746 936 +HGNC:13578 ZNF318 zinc finger protein 318 protein-coding gene gene with protein product Approved 6p21.1 06p21.1 "HRIHFB2436|ZFP318" Zinc fingers C2H2-type 28 2003-05-01 2014-11-18 24149 ENSG00000171467 OTTHUMG00000014732 uc003oux.3 AF090114 NM_014345 CCDS4895 Q5VUA4 10873617 MGI:1889348 RGD:1583221 ZNF318 +HGNC:13644 ZNF319 zinc finger protein 319 protein-coding gene gene with protein product Approved 16q21 16q21 "KIAA1388|Zfp319" Zinc fingers C2H2-type 28 2002-10-09 2014-11-18 57567 ENSG00000166188 OTTHUMG00000175512 uc002emx.2 AB037809 XM_005256069 CCDS32462 Q9P2F9 "10718198|11161788" MGI:1890618 RGD:1306198 ZNF319 346 +HGNC:13842 ZNF320 zinc finger protein 320 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "ZFPL|DKFZp686G16228" Zinc fingers C2H2-type 28 2006-07-19 2015-08-27 162967 ENSG00000182986 OTTHUMG00000182797 uc002qai.4 AF086262 NM_207333 CCDS33095 A2RRD8 11536051 ZNF320 606427 646 +HGNC:13827 ZNF321P zinc finger protein 321, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 MGC35402 ZNF321 zinc finger protein 321 2001-07-27 2011-04-19 2011-04-19 2015-08-25 399669 ENSG00000213801 OTTHUMG00000167760 AK096828 NR_037805 Q8N8H1 ZNF321P 718 +HGNC:23640 ZNF322 zinc finger protein 322 protein-coding gene gene with protein product Approved 6p22.2 06p22.2 "bA457M11.3|bA457M11.2" "ZNF489|ZNF388|HCG12|ZNF322A" "zinc finger protein 489|HLA complex group 12|zinc finger protein 322A" Zinc fingers C2H2-type 28 2003-11-27 2011-07-29 2011-07-29 2016-10-05 79692 ENSG00000181315 OTTHUMG00000014460 uc003nil.4 AY376736 NM_024639 CCDS4617 Q6U7Q0 15555580 MGI:2442566 RGD:1594230 610847 425 +HGNC:14003 ZNF322P1 zinc finger protein 322 pseudogene 1 pseudogene pseudogene Approved 9q22.33 09q22.33 "ZNF322|ZNF322B" "zinc finger protein 322|zinc finger protein 322B" 2000-11-27 2011-07-29 2011-07-29 2014-11-18 387328 ENSG00000188801 OTTHUMG00000020322 NM_199005 501 +HGNC:14096 ZNF324 zinc finger protein 324 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "ZF5128|ZNF324A" Zinc fingers C2H2-type 28 2000-12-11 2014-11-19 25799 ENSG00000083812 OTTHUMG00000183540 uc061dtb.1 AF060503 NM_014347 CCDS12981 O75467 MGI:2444641 ZNF324 335 +HGNC:33107 ZNF324B zinc finger protein 324B protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ45850 Zinc fingers C2H2-type 28 2006-08-14 2015-09-10 388569 ENSG00000249471 OTTHUMG00000183539 uc002qsv.2 AK127750 NM_207395 CCDS33138 Q6AW86 MGI:2444641 RGD:1306631 ZNF324B 334 +HGNC:14104 ZNF326 zinc finger protein 326 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "Zfp326|ZAN75|FLJ20403|ZIRD" ZNF-protein interacting with nuclear mRNPs and DBC1 Zinc fingers C2H2-type 28 2001-09-26 2016-10-05 284695 ENSG00000162664 OTTHUMG00000010675 uc001dnq.3 BC013102 NM_181781 "CCDS727|CCDS728|CCDS81351" Q5BKZ1 22446626 MGI:1927246 RGD:1592829 ZNF326 614601 +HGNC:14209 ZNF329 zinc finger protein 329 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ12586 Zinc fingers C2H2-type 28 2000-12-12 2015-08-27 79673 ENSG00000181894 OTTHUMG00000183453 uc032igm.2 AK022648 NM_024620 CCDS12972 Q86UD4 MGI:1921283 RGD:1565029 ZNF329 326 +HGNC:15462 ZNF330 zinc finger protein 330 protein-coding gene gene with protein product Approved 4q31.21 04q31.21 "NOA36|HSA6591" Zinc fingers C2H2-type 28 2003-12-02 2014-11-19 27309 ENSG00000109445 OTTHUMG00000133413 uc003iiq.5 AJ006591 NM_014487 CCDS3754 Q9Y3S2 "11528117|10593942" MGI:1353574 RGD:1307510 ZNF330 609550 +HGNC:15489 ZNF331 zinc finger protein 331 protein-coding gene gene with protein product Approved 19q13 19q13 "RITA|ZNF463|ZNF361" rearranged in thyroid adenomas Zinc fingers C2H2-type 28 2003-10-06 2016-10-12 55422 ENSG00000130844 OTTHUMG00000163019 uc002qbx.2 AF251515 NM_018555 CCDS33102 Q9NQX6 LRG_1068|http://www.lrg-sequence.org/LRG/LRG_1068 ZNF331 606043 577 +HGNC:15624 ZNF333 zinc finger protein 333 protein-coding gene gene with protein product Approved 19p13.12 19p13.12 KIAA1806 Zinc fingers C2H2-type 28 2005-01-07 2015-02-26 84449 ENSG00000160961 OTTHUMG00000183407 uc002mzn.4 NM_032433 "CCDS12316|CCDS74298" Q96JL9 12151103 ZNF333 611811 57 +HGNC:15806 ZNF334 zinc finger protein 334 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 bA179N14.1 Zinc fingers C2H2-type 28 2001-09-17 2015-08-27 55713 ENSG00000198185 OTTHUMG00000032654 uc002xsc.5 AK001331 XM_017027933 "CCDS33480|CCDS74736" Q9HCZ1 MGI:2388656 RGD:1592574 ZNF334 368 +HGNC:15807 ZNF335 zinc finger protein 335 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "bA465L10.2|NIF-1" NRC-interacting factor 1 Zinc fingers C2H2-type 28 2001-09-17 2014-11-18 63925 ENSG00000198026 OTTHUMG00000032637 uc002xqw.4 AK026157 NM_022095 CCDS13389 Q9H4Z2 "12215545|19131338" MGI:2682313 RGD:628751 ZNF335 610827 331701 +HGNC:15809 ZNF337 zinc finger protein 337 protein-coding gene gene with protein product Approved 20p11.21 20p11.21 dJ694B14.1 Zinc fingers C2H2-type 28 2001-09-17 2016-10-05 26152 ENSG00000130684 OTTHUMG00000032131 uc002wvc.4 XM_006723558 CCDS13174 Q9Y3M9 ZNF337 363 +HGNC:40759 ZNF337-AS1 ZNF337 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20p11.1 20p11.1 2014-01-08 2014-11-19 102724826 ENSG00000213742 OTTHUMG00000032129 NR_126465 +HGNC:15992 ZNF341 zinc finger protein 341 protein-coding gene gene with protein product Approved 20q11.22 20q11.22 dJ553F4.3 Zinc fingers C2H2-type 28 2001-09-17 2015-07-14 84905 ENSG00000131061 OTTHUMG00000032275 uc002wzx.5 AK027550 XR_001754424 "CCDS13227|CCDS74719" Q9BYN7 MGI:2682937 RGD:1564726 ZNF341 +HGNC:50736 ZNF341-AS1 ZNF341 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 20q11.22 20q11.22 2014-06-13 2014-06-13 101929746 ENSG00000230753 OTTHUMG00000032278 NR_110623 +HGNC:16017 ZNF343 zinc finger protein 343 protein-coding gene gene with protein product Approved 20p13 20p13 MGC10715 Zinc fingers C2H2-type 28 2001-07-16 2014-11-18 79175 ENSG00000088876 OTTHUMG00000031701 uc002wge.2 AK096911 NM_024325 "CCDS13028|CCDS74692|CCDS74693|CCDS74694" Q6P1L6 ZNF343 357 +HGNC:16367 ZNF345 zinc finger protein 345 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 HZF10 Zinc fingers C2H2-type 28 2001-08-07 2014-11-19 25850 ENSG00000251247 OTTHUMG00000048162 uc002oex.4 X78933 XM_011526704 CCDS12497 Q14585 7865130 ZNF345 226 +HGNC:16403 ZNF346 zinc finger protein 346 protein-coding gene gene with protein product Approved 5q35.2 05q35.2 "JAZ|Zfp346" 2004-04-28 2016-10-05 23567 ENSG00000113761 OTTHUMG00000130848 uc003mfi.4 AF083340 NM_012279 "CCDS4409|CCDS78094|CCDS83052|CCDS83053|CCDS83054" Q9UL40 10488071 MGI:1349417 RGD:1308068 ZNF346 605308 +HGNC:41423 ZNF346-IT1 ZNF346 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 5q35.2 05q35.2 ZNF346 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 106480741 ENSG00000251666 OTTHUMG00000163314 uc063kbe.1 +HGNC:16447 ZNF347 zinc finger protein 347 protein-coding gene gene with protein product Approved 19q13.3 19q13.3 ZNF1111 Zinc fingers C2H2-type 28 2001-08-24 2015-08-27 84671 ENSG00000197937 OTTHUMG00000182883 uc002qbb.3 AY029765 NM_032584 "CCDS33097|CCDS54314" Q96SE7 ZNF347 281 +HGNC:16656 ZNF350 zinc finger protein 350 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 "ZBRK1|ZFQR" Zinc fingers C2H2-type 28 2003-05-16 2014-11-19 59348 ENSG00000256683 OTTHUMG00000182538 uc002pyd.4 AF295096 NM_021632 CCDS12845 Q9GZX5 "11090615|11161714" ZNF350 605422 265 +HGNC:48598 ZNF350-AS1 ZNF350 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.41 19q13.41 uc002pyc HCCAT3 hepatocellular carcinoma associated transcript 3 (non-protein coding) 2013-05-14 2014-06-20 2014-06-20 2014-06-20 101669766 ENSG00000269235 OTTHUMG00000182537 "BC014606|DA066128" NR_103847 +HGNC:11628 ZNF354A zinc finger protein 354A protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "KID-1|EZNF|HKL1|KID1" TCF17 Zinc fingers C2H2-type 28 1995-07-06 2001-11-23 2015-08-27 6940 ENSG00000169131 OTTHUMG00000130895 uc003mjj.4 AF116030 NM_005649 CCDS4438 O60765 9465904 MGI:103172 RGD:2967 ZNF354A 602444 418 +HGNC:17197 ZNF354B zinc finger protein 354B protein-coding gene gene with protein product Approved 5q35.3 05q35.3 "KID2|FLJ25008" Zinc fingers C2H2-type 28 2001-11-21 2015-08-26 117608 ENSG00000178338 OTTHUMG00000130896 uc003mjl.4 AK057737 NM_058230 CCDS4439 Q96LW1 MGI:1351476 RGD:1560080 ZNF354B 419 +HGNC:16736 ZNF354C zinc finger protein 354C protein-coding gene gene with protein product Approved 5q35.3 05q35.3 KID3 Zinc fingers C2H2-type 28 2001-11-21 2016-10-05 30832 ENSG00000177932 OTTHUMG00000130888 uc003mju.4 XM_017009409 CCDS4443 Q86Y25 10786630 MGI:1353621 RGD:69405 ZNF354C 421 +HGNC:17218 ZNF355P zinc finger protein 355, pseudogene pseudogene pseudogene Approved 21q11.2 21q11.2 PRED65 ZNF834 "zinc finger protein 355, pseudogene|zinc finger protein 834|zinc finger protein 355 (pseudogene)" 2003-10-01 2010-08-03 2014-11-18 100505852 ENSG00000168122 OTTHUMG00000074165 Q9NSJ1 1227 +HGNC:16838 ZNF358 zinc finger protein 358 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "FLJ10390|ZFEND" Zinc fingers C2H2-type 28 2001-12-06 2015-08-27 140467 ENSG00000198816 OTTHUMG00000182582 uc002mgn.3 AK001252 XM_017026296 CCDS32890 Q9NW07 MGI:2153740 RGD:1310416 ZNF358 508 +HGNC:18079 ZNF362 zinc finger protein 362 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 "FLJ25476|lin-29|RN" rotund homolog (Drosophila) Zinc fingers C2H2-type 28 2002-01-29 2015-08-26 149076 ENSG00000160094 OTTHUMG00000004124 uc001bxc.1 NM_152493 CCDS377 Q5T0B9 MGI:2652839 RGD:1306498 ZNF362 +HGNC:18194 ZNF365 zinc finger protein 365 protein-coding gene gene with protein product Approved 10q21.2 10q21.2 "KIAA0844|UAN" Talanin Zinc fingers C2H2-type 28 2003-06-13 2014-11-18 22891 ENSG00000138311 OTTHUMG00000018302 uc001jlz.5 AB020651 NM_014951 "CCDS7264|CCDS7265|CCDS31209|CCDS41531" "Q70YC4|Q70YC5" "10048485|12740763" MGI:2143676 RGD:1565986 ZNF365 607818 371324 +HGNC:18316 ZNF366 zinc finger protein 366 protein-coding gene gene with protein product Approved 5q13.1 05q13.1 FLJ39796 Zinc fingers C2H2-type 28 2002-04-29 2015-08-26 167465 ENSG00000178175 OTTHUMG00000100965 uc003kce.2 AK097115 NM_152625 CCDS4015 Q8N895 MGI:2178429 RGD:2322904 ZNF366 610159 414 +HGNC:18320 ZNF367 zinc finger protein 367 protein-coding gene gene with protein product Approved 9q22.32 09q22.32 FLJ33970 Zinc fingers C2H2-type 28 2002-04-29 2016-10-05 195828 ENSG00000165244 OTTHUMG00000020295 uc004awf.4 AK091289 XM_011518345 CCDS6718 Q7RTV3 MGI:2442266 RGD:1307136 ZNF367 610160 +HGNC:17409 ZNF382 zinc finger protein 382 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "FLJ14686|KS1" Zinc fingers C2H2-type 28 2003-11-27 2016-10-05 84911 ENSG00000161298 OTTHUMG00000048153 uc002oek.5 AF513816 NM_032825 "CCDS33004|CCDS58659" Q96SR6 MGI:3588204 RGD:708385 ZNF382 609516 541 +HGNC:18609 ZNF383 zinc finger protein 383 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 FLJ35863 Zinc fingers C2H2-type 28 2004-04-15 2015-09-29 163087 ENSG00000188283 OTTHUMG00000181890 uc002oft.2 AY438646 NM_152604 CCDS12501 Q8NA42 MGI:1920979 RGD:2318764 ZNF383 231 +HGNC:11955 ZNF384 zinc finger protein 384 protein-coding gene gene with protein product Approved 12p13.31 12p13.31 "CAGH1A|CIZ|NMP4|NP" TNRC1 trinucleotide repeat containing 1 "Zinc fingers C2H2-type|Trinucleotide repeat containing" "28|775" 2000-01-27 2002-05-24 2002-05-23 2015-09-08 171017 ENSG00000126746 OTTHUMG00000168716 uc010sfh.3 U80738 XM_011520921 "CCDS8557|CCDS31732|CCDS44817" Q8TF68 "9225980|11149472" MGI:2443203 RGD:708346 ZNF384 609951 +HGNC:25101 ZNF384OS entry withdrawn withdrawn withdrawn Entry Withdrawn 2008-06-18 +HGNC:17521 ZNF385A zinc finger protein 385A protein-coding gene gene with protein product Approved 12q13.13 12q13.13 "DKFZp586G1122|Hzf|ZFP385" ZNF385 zinc finger protein 385 2003-10-28 2007-12-06 2007-12-06 2015-05-18 25946 ENSG00000161642 OTTHUMG00000169840 uc001sfy.4 AF304052 NM_015481 "CCDS8879|CCDS44910|CCDS44911|CCDS76563" Q96PM9 MGI:1352495 RGD:1593784 ZNF385A 609124 +HGNC:26332 ZNF385B zinc finger protein 385B protein-coding gene gene with protein product Approved 2q31.2-q31.3 02q31.2-q31.3 FLJ25270 ZNF533 zinc finger protein 533 2004-02-05 2007-12-06 2007-12-06 2016-10-11 151126 ENSG00000144331 OTTHUMG00000154559 uc002unn.5 AK057999 NM_152520 "CCDS33339|CCDS46463|CCDS46464" Q569K4 "22945289|23029477" MGI:2444734 RGD:1311181 ZNF385B 612344 +HGNC:33722 ZNF385C zinc finger protein 385C protein-coding gene gene with protein product Approved 17q21.2 17q21.2 2007-12-06 2014-11-18 201181 ENSG00000187595 OTTHUMG00000132073 uc060fgj.1 BC067901 NM_001013624 CCDS74065 Q66K41 MGI:3608347 RGD:1563442 ZNF385C +HGNC:26191 ZNF385D zinc finger protein 385D protein-coding gene gene with protein product Approved 3p24.3 03p24.3 FLJ22419 ZNF659 zinc finger protein 659 2005-01-24 2007-12-06 2007-12-06 2014-11-18 79750 ENSG00000151789 OTTHUMG00000130484 uc003cce.5 BC007212 NM_024697 CCDS2636 Q9H6B1 12477932 RGD:1359606 ZNF385D +HGNC:41136 ZNF385D-AS1 ZNF385D antisense RNA 1 non-coding RNA RNA, long non-coding Approved 3p24.3 03p24.3 ZNF385D antisense RNA 1 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874216 ENSG00000225542 OTTHUMG00000155559 uc062hlq.1 NR_046731 +HGNC:42420 ZNF385D-AS2 ZNF385D antisense RNA 2 non-coding RNA RNA, long non-coding Approved 3p24.3 03p24.3 ZNF385D antisense RNA 2 (non-protein coding) 2011-07-25 2012-08-15 2014-11-19 100874221 ENSG00000223351 OTTHUMG00000155585 uc062hly.1 NR_046876 +HGNC:18779 ZNF391 zinc finger protein 391 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 dJ153G14.3 Zinc fingers C2H2-type 28 2003-11-27 2016-10-05 346157 ENSG00000124613 OTTHUMG00000014477 uc003njf.2 BC132797 NM_001076781 CCDS43429 Q9UJN7 ZNF391 1082 +HGNC:18832 ZNF394 zinc finger protein 394 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "ZKSCAN14|FLJ12298|ZSCAN46" Zinc fingers C2H2-type 28 2002-07-22 2015-09-08 84124 ENSG00000160908 OTTHUMG00000154660 uc003uqs.4 BC025241 NM_032164 CCDS5666 Q53GI3 15249231 MGI:1914485 RGD:628654 ZNF394 455 +HGNC:18737 ZNF395 zinc finger protein 395 protein-coding gene gene with protein product Approved 8p21.1 08p21.1 "PRF-1|HDBP2|PBF|DKFZp434K1210" Zinc fingers C2H2-type 28 2004-04-30 2016-10-05 55893 ENSG00000186918 OTTHUMG00000102137 uc003xgr.4 AB044750 NM_018660 CCDS6067 Q9H8N7 14625278 MGI:2682318 RGD:1307849 ZNF395 609494 +HGNC:18824 ZNF396 zinc finger protein 396 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 "ZSCAN14|FLJ31213" Zinc fingers C2H2-type 28 2002-07-22 2016-10-05 252884 ENSG00000186496 OTTHUMG00000132562 uc060olp.1 AK055775 NM_145756 "CCDS11913|CCDS82246|CCDS82247" Q96N95 ZNF396 609600 154 +HGNC:18818 ZNF397 zinc finger protein 397 protein-coding gene gene with protein product Approved 18p12 18p12 "ZSCAN15|MGC13250" ZNF47 zinc finger protein 47 Zinc fingers C2H2-type 28 2002-07-22 2003-07-22 2014-11-19 84307 ENSG00000186812 OTTHUMG00000178532 uc010dmp.4 BC006172 NM_032347 "CCDS32814|CCDS45852" Q8NF99 MGI:1916506 RGD:6504280 ZNF397 609601 151 +HGNC:18373 ZNF398 zinc finger protein 398 protein-coding gene gene with protein product Approved 7q35 07q35 "ZER6|KIAA1339|P51|P71" Zinc fingers C2H2-type 28 2002-08-06 2015-09-08 57541 ENSG00000197024 OTTHUMG00000158970 uc011kul.3 AB037760 XM_011516439 "CCDS5894|CCDS47739" Q8TD17 11779858 MGI:1917856 RGD:1562129 ZNF398 465 +HGNC:19292 ZNF402P zinc finger protein 402, pseudogene pseudogene pseudogene Approved 22q11.1 22q11.1 "zinc finger protein 402 pseudogene|zinc finger protein 402 (pseudogene)" 2002-10-03 2010-08-03 2016-08-16 266673 ENSG00000220248 OTTHUMG00000147350 NG_002664 PGOHUM00000297433 812 +HGNC:19417 ZNF404 zinc finger protein 404 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 Zinc fingers C2H2-type 28 2002-11-04 2014-11-19 342908 ENSG00000176222 OTTHUMG00000182206 uc002oxs.7 XM_092027 NM_001033719 CCDS59394 Q494X3 ZNF404 756 +HGNC:19904 ZNF407 zinc finger protein 407 protein-coding gene gene with protein product Approved 18q23 18q23 "FLJ20307|FLJ13839|KIAA1703" Zinc fingers C2H2-type 28 2002-11-29 2015-09-08 55628 ENSG00000215421 OTTHUMG00000179122 uc002llw.3 AB051490 NM_017757 "CCDS45885|CCDS54191|CCDS58634" Q9C0G0 11214970 MGI:2685179 RGD:1310645 ZNF407 615894 +HGNC:20041 ZNF408 zinc finger protein 408 protein-coding gene gene with protein product Approved 11p11.2 11p11.2 FLJ12827 "Zinc fingers C2H2-type|PR/SET domain family" "28|1197" 2002-12-16 2016-01-26 79797 ENSG00000175213 OTTHUMG00000166568 uc001nde.3 AF346626 NM_024741 CCDS7923 Q9H9D4 15231747 MGI:2685857 RGD:2318583 ZNF408 616454 357738 56 +HGNC:20144 ZNF410 zinc finger protein 410 protein-coding gene gene with protein product Approved 14q24.3 14q24.3 "APA1|APA-1" Zinc fingers C2H2-type 28 2003-12-10 2015-08-26 57862 ENSG00000119725 OTTHUMG00000171257 uc001xoz.3 U90919 NM_021188 "CCDS9821|CCDS55929|CCDS55930|CCDS55931" Q86VK4 12370286 MGI:1289280 RGD:1305636 ZNF410 +HGNC:20630 ZNF414 zinc finger protein 414 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "MGC15716|Zfp414" Zinc fingers C2H2-type 28 2005-04-26 2014-11-18 84330 ENSG00000133250 OTTHUMG00000182240 uc002mke.5 AK074191 NM_032370 "CCDS12205|CCDS54211" Q96IQ9 MGI:1915641 RGD:1308123 ZNF414 +HGNC:20636 ZNF415 zinc finger protein 415 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 Zinc fingers C2H2-type 28 2004-02-20 2015-09-29 55786 ENSG00000170954 OTTHUMG00000182865 uc010yds.3 AK002053 NM_018355 "CCDS12860|CCDS54313|CCDS82393" Q09FC8 14702039 ZNF415 280 +HGNC:49869 ZNF415P1 zinc finger protein 415 pseudogene 1 pseudogene pseudogene Approved 18p11.22 18p11.22 2014-03-18 2014-03-18 100419893 ENSG00000266127 OTTHUMG00000178559 NG_026310 PGOHUM00000234986 +HGNC:20645 ZNF416 zinc finger protein 416 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 FLJ20557 Zinc fingers C2H2-type 28 2003-03-17 2015-09-29 55659 ENSG00000083817 OTTHUMG00000183467 uc002qpf.4 BC000130 NM_017879 CCDS12954 Q9BWM5 MGI:2444763 RGD:1311663 ZNF416 310 +HGNC:20646 ZNF417 zinc finger protein 417 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 MGC34079 Zinc fingers C2H2-type 28 2003-03-17 2015-09-29 147687 ENSG00000173480 OTTHUMG00000183488 uc002qqq.4 BC025783 NM_152475 "CCDS12965|CCDS74469" Q8TAU3 ZNF417 321 +HGNC:20647 ZNF418 zinc finger protein 418 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "KIAA1956|FLJ31551" Zinc fingers C2H2-type 28 2003-03-17 2015-09-29 147686 ENSG00000196724 OTTHUMG00000183448 uc002qqs.1 "AB075836|AY695825" NM_133460 "CCDS42642|CCDS82409|CCDS82410" Q8TF45 11853319 ZNF418 130 +HGNC:20648 ZNF419 zinc finger protein 419 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 ZAPHIR ZNF419A zinc finger protein 419A "Zinc fingers C2H2-type|Minor histocompatibility antigens" "28|870" 2003-03-17 2006-12-15 2006-12-15 2015-09-29 79744 ENSG00000105136 OTTHUMG00000037073 uc002qow.3 AK026886 NM_024691 "CCDS42637|CCDS46211|CCDS54325|CCDS54326|CCDS54327|CCDS54328" Q96HQ0 21738768 ZNF419 306 +HGNC:20649 ZNF420 zinc finger protein 420 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ32191 Zinc fingers C2H2-type 28 2003-03-17 2015-08-26 147923 ENSG00000197050 OTTHUMG00000048168 uc002ofl.4 AK056695 NM_144689 CCDS12498 Q8TAQ5 MGI:2444666 RGD:9421075 ZNF420 228 +HGNC:16762 ZNF423 zinc finger protein 423 protein-coding gene gene with protein product Approved 16q12.1 16q12.1 "KIAA0760|OAZ|Roaz|Ebfaz|Zfp104|NPHP14|JBTS19" "OLF-1/EBF associated zinc finger gene| Smad- and Olf-interacting zinc finger protein|early B-cell factor associated zinc finger protein" Zinc fingers C2H2-type 28 2004-04-06 2016-10-05 23090 ENSG00000102935 OTTHUMG00000173491 uc031qwd.2 AB018303 NM_015069 "CCDS32445|CCDS61930|CCDS81979" Q2M1K9 "9872452|10660046" MGI:1891217 RGD:621664 ZNF423 604557 313822 +HGNC:20690 ZNF425 zinc finger protein 425 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 Zinc fingers C2H2-type 28 2003-03-31 2015-09-29 155054 ENSG00000204947 OTTHUMG00000158971 uc003wfj.4 AK056498 XM_088140 CCDS34773 Q6IV72 ZNF425 527 +HGNC:20725 ZNF426 zinc finger protein 426 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC2663 Zinc fingers C2H2-type 28 2003-03-25 2015-08-26 79088 ENSG00000130818 OTTHUMG00000180132 uc002mlq.4 AK095759 NM_024106 "CCDS12215|CCDS74279|CCDS82285" Q9BUY5 MGI:1920248 RGD:1590942 ZNF426 175 +HGNC:20804 ZNF428 zinc finger protein 428 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "MGC51082|Zfp428" C19orf37 chromosome 19 open reading frame 37 Zinc fingers C2H2-type 28 2005-11-21 2006-07-04 2006-07-04 2014-11-18 126299 ENSG00000131116 OTTHUMG00000182734 uc002oxa.4 AY257197 NM_182498 CCDS12626 Q96B54 MGI:1916463 RGD:1564862 ZNF428 +HGNC:20817 ZNF429 zinc finger protein 429 protein-coding gene gene with protein product Approved 19p12 19p12 Zinc fingers C2H2-type 28 2003-04-25 2015-09-29 353088 ENSG00000197013 OTTHUMG00000182848 uc002nqd.2 AY269786 NM_001001415 CCDS42537 Q86V71 ZNF429 347 +HGNC:20808 ZNF430 zinc finger protein 430 protein-coding gene gene with protein product Approved 19p12 19p12 FLJ13659 Zinc fingers C2H2-type 28 2003-04-09 2015-09-29 80264 ENSG00000118620 OTTHUMG00000182771 uc002npj.4 AK023721 NM_025189 CCDS32978 Q9H8G1 ZNF430 202 +HGNC:20809 ZNF431 zinc finger protein 431 protein-coding gene gene with protein product Approved 19p12 19p12 KIAA1969 Zinc fingers C2H2-type 28 2003-04-09 2016-07-25 170959 ENSG00000196705 OTTHUMG00000182835 uc002npp.3 AB075849 XM_086098 CCDS32979 Q8TF32 11853319 ZNF431 203 +HGNC:20810 ZNF432 zinc finger protein 432 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 KIAA0798 Zinc fingers C2H2-type 28 2003-04-09 2015-09-29 9668 ENSG00000256087 OTTHUMG00000182552 uc061cax.1 AB018341 NM_014650 CCDS12848 O94892 9872452 ZNF432 267 +HGNC:20811 ZNF433 zinc finger protein 433 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ40981 Zinc fingers C2H2-type 28 2003-04-09 2016-10-05 163059 ENSG00000197647 OTTHUMG00000156427 uc002msy.2 AK098300 NM_152602 "CCDS45983|CCDS77240" Q8N7K0 "MGI:1920860|MGI:5591846|MGI:5592537" ZNF433 184 +HGNC:20814 ZNF436 zinc finger protein 436 protein-coding gene gene with protein product Approved 1p36.12 01p36.12 "KIAA1710|Zfp46" Zinc fingers C2H2-type 28 2003-04-09 2016-10-05 80818 ENSG00000125945 OTTHUMG00000003232 uc001bgu.4 AB051497 NM_030634 CCDS233 Q9C0F3 11214970 MGI:99192 RGD:1310584 ZNF436 611703 6 +HGNC:25122 ZNF436-AS1 ZNF436 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p36.12 01p36.12 FLJ90508 C1orf213 chromosome 1 open reading frame 213 2006-08-21 2014-10-01 2014-10-01 2014-11-19 148898 ENSG00000249087 OTTHUMG00000003225 BC028411 NR_033691 Q8NC38 12477932 +HGNC:21029 ZNF438 zinc finger protein 438 protein-coding gene gene with protein product Approved 10p11.23 10p11.23 bA330O11.1 Zinc fingers C2H2-type 28 2006-02-15 2014-11-18 220929 ENSG00000183621 OTTHUMG00000017904 uc010qdz.3 AK057323 NM_182755 "CCDS7168|CCDS44369|CCDS53504" Q7Z4V0 MGI:2444919 RGD:1307214 ZNF438 +HGNC:20873 ZNF439 zinc finger protein 439 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 DKFZp571K0837 Zinc fingers C2H2-type 28 2003-04-16 2016-10-05 90594 ENSG00000171291 OTTHUMG00000156527 uc002mss.4 AL833935 NM_152262 CCDS12268 Q8NDP4 ZNF439 183 +HGNC:20874 ZNF440 zinc finger protein 440 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ37933 Zinc fingers C2H2-type 28 2003-04-16 2006-08-14 2006-08-14 2016-10-05 126070 ENSG00000171295 OTTHUMG00000156403 uc002msp.2 AK095252 NM_152357 CCDS42503 Q8IYI8 ZNF440 182 +HGNC:20875 ZNF441 zinc finger protein 441 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ38637 Zinc fingers C2H2-type 28 2003-04-16 2016-10-05 126068 ENSG00000197044 OTTHUMG00000154449 uc010dyj.4 AK095956 NM_152355 CCDS12266 Q8N8Z8 ZNF441 180 +HGNC:20877 ZNF442 zinc finger protein 442 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ14356 Zinc fingers C2H2-type 28 2003-04-16 2016-10-05 79973 ENSG00000198342 OTTHUMG00000156411 uc002mtr.2 AK024418 NM_030824 CCDS12271 Q9H7R0 "MGI:1261426|MGI:3652251|MGI:3652255|MGI:3702417|MGI:3702875|MGI:3709288|MGI:3709298|MGI:3709324|MGI:3709632|MGI:3709638|MGI:3779623|MGI:3780195|MGI:3782904|MGI:3782921" RGD:6502699 ZNF442 189 +HGNC:20878 ZNF443 zinc finger protein 443 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 ZK1 Zinc fingers C2H2-type 28 2003-04-16 2016-10-05 10224 ENSG00000180855 OTTHUMG00000156404 uc002mtu.4 AB011414 NM_005815 CCDS32918 Q9Y2A4 9731181 MGI:2384299 RGD:628698 ZNF443 606697 191 +HGNC:16052 ZNF444 zinc finger protein 444 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "ZSCAN17|FLJ11137|EZF2" Zinc fingers C2H2-type 28 2003-05-01 2014-11-19 55311 ENSG00000167685 OTTHUMG00000181761 uc002qmm.4 AB052954 NM_018337 "CCDS12939|CCDS59426" Q8N0Y2 "11978792|19760602" MGI:1923365 RGD:1304847 ZNF444 607874 290 +HGNC:35157 ZNF444P1 zinc finger protein 444 pseudogene 1 pseudogene pseudogene Approved 15q22.1 15q22.1 ZNF864P zinc finger protein 864, pseudogene 2008-09-26 2011-04-07 2011-04-07 2015-05-29 100419866 ENSG00000259738 OTTHUMG00000171986 NG_025387 PGOHUM00000293259 1160 +HGNC:21018 ZNF445 zinc finger protein 445 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "ZKSCAN15|ZSCAN47" ZNF168 zinc finger protein 168 Zinc fingers C2H2-type 28 2003-06-02 2003-10-07 2016-10-05 353274 ENSG00000185219 OTTHUMG00000133042 uc003cnf.4 AY262260 NM_181489 CCDS2713 P59923 7814019 MGI:2143340 RGD:1559144 ZNF445 578 +HGNC:21036 ZNF446 zinc finger protein 446 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "ZKSCAN20|FLJ20626|ZSCAN52" Zinc fingers C2H2-type 28 2003-06-02 2014-11-19 55663 ENSG00000083838 OTTHUMG00000183541 uc002qsz.4 NM_017908 CCDS12982 Q9NWS9 MGI:2442185 RGD:7612453 ZNF446 336 +HGNC:21039 ZNF449 zinc finger protein 449 protein-coding gene gene with protein product Approved Xq26.3 Xq26.3 "ZSCAN19|FLJ23614" Zinc fingers C2H2-type 28 2003-06-02 2015-08-27 203523 ENSG00000173275 OTTHUMG00000022478 uc004eys.4 AY280801 NM_152695 CCDS14649 Q6P9G9 MGI:1925869 RGD:1584453 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF449 ZNF449 300627 537 +HGNC:21091 ZNF451 zinc finger protein 451 protein-coding gene gene with protein product Approved 6p12.1 06p12.1 "KIAA0576|COASTER|dJ417I1.1|KIAA1702" Zinc fingers C2H2-type 28 2003-05-23 2014-11-18 26036 ENSG00000112200 OTTHUMG00000014916 uc003pdn.3 AB011148 NM_015555 "CCDS4960|CCDS43477|CCDS59026" Q9Y4E5 9628581 MGI:2137896 RGD:1305865 ZNF451 615708 +HGNC:21200 ZNF454 zinc finger protein 454 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 FLJ37444 Zinc fingers C2H2-type 28 2003-07-14 2015-08-26 285676 ENSG00000178187 OTTHUMG00000130891 uc003mjo.3 AK094763 XM_209718 CCDS4441 Q8N9F8 MGI:2679253 RGD:7529496 ZNF454 420 +HGNC:21628 ZNF460 zinc finger protein 460 protein-coding gene gene with protein product Approved 19q13.4 19q13.4 HZF8 ZNF272 zinc finger protein 272 Zinc fingers C2H2-type 28 2006-06-28 2014-11-19 10794 ENSG00000197714 OTTHUMG00000183222 uc002qog.3 X78931 NM_006635 "CCDS12949|CCDS82404" Q14592 15004467 ZNF460 604755 301 +HGNC:21629 ZNF461 zinc finger protein 461 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "GIOT-1|MGC33911" Zinc fingers C2H2-type 28 2006-06-28 2015-09-29 92283 ENSG00000197808 OTTHUMG00000180832 uc002oem.4 BX649031 NM_153257 "CCDS54257|CCDS74348" Q8TAF7 "11579202|15004467" ZNF461 608640 224 +HGNC:21684 ZNF462 zinc finger protein 462 protein-coding gene gene with protein product Approved 9q31.2 09q31.2 "DKFZP762N2316|KIAA1803|Zfp462" Zinc fingers C2H2-type 28 2004-01-05 2016-10-05 58499 ENSG00000148143 OTTHUMG00000020438 uc004bcz.4 AB058706 NM_021224 CCDS35096 Q96JM2 MGI:107690 RGD:1562123 ZNF462 +HGNC:23154 ZNF467 zinc finger protein 467 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "EZI|Zfp467" Zinc fingers C2H2-type 28 2004-11-03 2014-11-19 168544 ENSG00000181444 OTTHUMG00000157883 uc003wgd.3 BC029296 NM_207336 CCDS5899 Q7Z7K2 12426389 MGI:1916160 RGD:1561603 ZNF467 614040 470 +HGNC:33105 ZNF468 zinc finger protein 468 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 Zinc fingers C2H2-type 28 2006-08-11 2014-11-19 90333 ENSG00000204604 OTTHUMG00000182687 uc002qaf.4 AK023558 NM_001008801 "CCDS33094|CCDS62781" Q5VIY5 16144304 ZNF468 616841 716 +HGNC:23216 ZNF469 zinc finger protein 469 protein-coding gene gene with protein product Approved 16q24.2 16q24.2 KIAA1858 Zinc fingers C2H2-type 28 2003-10-15 2016-01-26 84627 ENSG00000225614 OTTHUMG00000173151 uc002fku.2 AB058761 NG_012236 CCDS45544 Q96JG9 11347906 MGI:2684868 RGD:1583874 ZNF469 612078 159463 597 +HGNC:22220 ZNF470 zinc finger protein 470 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "CZF-1|FLJ26175" Zinc fingers C2H2-type 28 2006-05-12 2014-11-19 388566 ENSG00000197016 OTTHUMG00000182141 uc002qnl.5 AK129686 NM_001001668 CCDS33122 Q6ECI4 15302581 ZNF470 49 +HGNC:23226 ZNF471 zinc finger protein 471 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "KIAA1396|Z1971" Zinc fingers C2H2-type 28 2003-10-21 2014-11-19 57573 ENSG00000196263 OTTHUMG00000181943 uc002qnh.4 AB037817 NM_020813 CCDS12945 Q9BX82 10718198 MGI:107783 ZNF471 296 +HGNC:23239 ZNF473 zinc finger protein 473 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 "KIAA1141|DKFZP434N043|HZFP100" Zinc fingers C2H2-type 28 2003-10-28 2015-08-26 25888 ENSG00000142528 OTTHUMG00000183054 uc002prm.4 AB032967 XM_046390 "CCDS33077|CCDS77335" Q8WTR7 11782445 MGI:2442697 RGD:1305084 ZNF473 63 +HGNC:23245 ZNF474 zinc finger protein 474 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 "4933409D10Rik|FLJ32921" Zinc fingers C2H2-type 28 2006-03-24 2015-08-26 133923 ENSG00000164185 OTTHUMG00000128911 uc003ksv.4 AK057483 NM_207317 CCDS4130 Q6S9Z5 MGI:1914008 RGD:1564428 ZNF474 +HGNC:23258 ZNF479 zinc finger protein 479 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 KR19 Zinc fingers C2H2-type 28 2003-10-31 2014-11-19 90827 ENSG00000185177 OTTHUMG00000156682 uc010kzo.4 AF277624 XM_291202 CCDS43590 Q96JC4 11410164 ZNF479 670 +HGNC:23305 ZNF480 zinc finger protein 480 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 MGC32104 Zinc fingers C2H2-type 28 2004-07-15 2014-11-18 147657 ENSG00000198464 OTTHUMG00000157507 uc010ydl.3 AY512662 NM_144684 "CCDS12850|CCDS74437|CCDS77346" Q8WV37 15219843 ZNF480 613910 268 +HGNC:23384 ZNF483 zinc finger protein 483 protein-coding gene gene with protein product Approved 9q31.3 09q31.3 "ZKSCAN16|KIAA1962|ZSCAN48" Zinc fingers C2H2-type 28 2003-11-14 2016-10-05 158399 ENSG00000173258 OTTHUMG00000020490 uc004bff.4 AB075842 XM_088567 "CCDS35105|CCDS35106" Q8TF39 MGI:3510405 RGD:727958 ZNF483 566 +HGNC:23385 ZNF484 zinc finger protein 484 protein-coding gene gene with protein product Approved 9q22.31 09q22.31 "BA526D8.4|FLJ33884" Zinc fingers C2H2-type 28 2004-08-25 2016-10-05 83744 ENSG00000127081 OTTHUMG00000020236 uc004asu.3 AK091203 XM_046861 "CCDS35066|CCDS35067|CCDS59136" Q5JVG2 ZNF484 564 +HGNC:23440 ZNF485 zinc finger protein 485 protein-coding gene gene with protein product Approved 10q11.21 10q11.21 Zinc fingers C2H2-type 28 2004-02-20 2014-11-19 220992 ENSG00000198298 OTTHUMG00000018040 uc010qfc.3 AK074679 NM_145312 CCDS7205 Q8NCK3 ZNF485 46 +HGNC:20807 ZNF486 zinc finger protein 486 protein-coding gene gene with protein product Approved 19p12 19p12 MGC2396 KRBO2 KRAB domain only 2 Zinc fingers C2H2-type 28 2003-11-20 2003-12-17 2003-12-16 2015-08-27 90649 ENSG00000256229 OTTHUMG00000179731 uc002nou.4 BC008936 NM_052852 CCDS46029 Q96H40 ZNF486 614 +HGNC:23488 ZNF487 zinc finger protein 487 other unknown Approved 10q11.21 10q11.21 "KRBO1|ZNF487P" "KRAB domain only 1|zinc finger protein 487, pseudogene" 2006-02-10 2013-03-06 2013-03-06 2014-11-19 642819 ENSG00000243660 OTTHUMG00000185507 uc057swm.1 XM_926224 B1APH4 1060 +HGNC:23535 ZNF488 zinc finger protein 488 protein-coding gene gene with protein product Approved 10q11.22 10q11.22 FLJ32104 Zinc fingers C2H2-type 28 2003-11-21 2015-08-26 118738 ENSG00000265763 OTTHUMG00000188322 uc001jex.3 AK056666 NM_153034 CCDS73120 Q96MN9 MGI:2686052 RGD:1309835 ZNF488 +HGNC:23705 ZNF490 zinc finger protein 490 protein-coding gene gene with protein product Approved 19p13.2-p13.13 19p13.2-p13.13 KIAA1198 Zinc fingers C2H2-type 28 2003-12-02 2016-10-11 57474 ENSG00000188033 OTTHUMG00000156398 uc002mtz.3 AB033024 NM_020714 CCDS12272 Q9ULM2 ZNF490 193 +HGNC:23706 ZNF491 zinc finger protein 491 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ34791 Zinc fingers C2H2-type 28 2003-12-02 2014-11-18 126069 ENSG00000177599 OTTHUMG00000156529 uc002mso.2 AK092110 NM_152356 CCDS12267 Q8N8L2 ZNF491 181 +HGNC:23707 ZNF492 zinc finger protein 492 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 KIAA1473 ZNF115 zinc finger protein 115 (Y20) Zinc fingers C2H2-type 28 2003-12-02 2014-11-19 57615 ENSG00000229676 OTTHUMG00000182987 uc002nqw.3 AB040906 NM_020855 CCDS46032 Q9P255 10819331 ZNF492 620 +HGNC:23708 ZNF493 zinc finger protein 493 protein-coding gene gene with protein product Approved 19p12 19p12 FLJ36504 Zinc fingers C2H2-type 28 2003-12-02 2014-11-19 284443 ENSG00000196268 OTTHUMG00000141297 uc002npw.4 "AK093823|BC006408|BC022394" NM_175910 "CCDS12412|CCDS42536|CCDS12411" Q6ZR52 ZNF493 204 +HGNC:23713 ZNF496 zinc finger protein 496 protein-coding gene gene with protein product Approved 1q44 01q44 "ZKSCAN17|MGC15548|ZSCAN49" Zinc fingers C2H2-type 28 2003-12-03 2015-08-27 84838 ENSG00000162714 OTTHUMG00000041164 uc001ico.4 BC007263 NM_032752 CCDS1631 Q96IT1 12477932 MGI:2679270 RGD:1304611 ZNF496 613911 35 +HGNC:23714 ZNF497 zinc finger protein 497 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ44773 Zinc fingers C2H2-type 28 2003-12-03 2014-11-18 162968 ENSG00000174586 OTTHUMG00000183510 uc002qsh.3 AK126727 NM_198458 CCDS12977 Q6ZNH5 ZNF497 331 +HGNC:23716 ZNF500 zinc finger protein 500 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "ZKSCAN18|KIAA0557|ZSCAN50" Zinc fingers C2H2-type 28 2003-12-03 2014-11-19 26048 ENSG00000103199 OTTHUMG00000176543 uc002cxp.2 AB011129 XM_085507 "CCDS32383|CCDS76814" O60304 9628581 ZNF500 582 +HGNC:23717 ZNF501 zinc finger protein 501 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 MGC21738 ZNF52 zinc finger protein 52 Zinc fingers C2H2-type 28 2003-12-03 2016-10-05 115560 ENSG00000186446 OTTHUMG00000133048 uc003cnu.3 BC013762 NM_145044 CCDS2720 Q96CX3 1505991 ZNF501 391 +HGNC:23718 ZNF502 zinc finger protein 502 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 "FLJ14855|FLJ12515" Zinc fingers C2H2-type 28 2003-12-03 2016-10-05 91392 ENSG00000196653 OTTHUMG00000133086 uc011bab.3 AK022577 NM_033210 CCDS2719 Q8TBZ5 MGI:3033356 RGD:6494479 ZNF502 390 +HGNC:23589 ZNF503 zinc finger protein 503 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 "FLJ45745|MGC2555|Nlz2" Zinc fingers C2H2-type 28 2003-12-04 2016-10-05 84858 ENSG00000165655 OTTHUMG00000018526 uc001jxg.4 AK127647 NM_032772 CCDS7350 Q96F45 19014486 MGI:1353644 RGD:1312018 ZNF503 613902 +HGNC:27370 ZNF503-AS1 ZNF503 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.2 10q22.2 ZNF503 antisense RNA 1 (non-protein coding) 2011-08-11 2012-08-15 2014-11-19 253264 ENSG00000226051 OTTHUMG00000018524 uc057ugr.1 NR_038223 +HGNC:23525 ZNF503-AS2 ZNF503 antisense RNA 2 non-coding RNA RNA, long non-coding Approved 10q22.2 10q22.2 "C10orf41|NCRNA00245" "chromosome 10 open reading frame 41|non-protein coding RNA 245|ZNF503 antisense RNA 2 (non-protein coding)" 2004-05-27 2011-08-11 2012-08-15 2016-10-05 100131213 ENSG00000237149 OTTHUMG00000018528 uc010qlf.3 BC029963 NR_024422 A6NEH8 ZNF503-AS2 +HGNC:23780 ZNF506 zinc finger protein 506 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 DKFZp761G1812 Zinc fingers C2H2-type 28 2003-12-10 2014-11-19 440515 ENSG00000081665 OTTHUMG00000182367 uc060wcw.1 AK095575 XM_036218 "CCDS42531|CCDS46027" Q5JVG8 ZNF506 692 +HGNC:23783 ZNF507 zinc finger protein 507 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 KIAA1084 Zinc fingers C2H2-type 28 2003-12-10 2015-08-27 22847 ENSG00000168813 OTTHUMG00000180220 uc002ntd.4 AB029007 NM_014910 CCDS32985 Q8TCN5 MGI:1916378 RGD:1307017 ZNF507 +HGNC:29161 ZNF510 zinc finger protein 510 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 KIAA0972 Zinc fingers C2H2-type 28 2003-12-19 2014-11-19 22869 ENSG00000081386 OTTHUMG00000020303 uc004awo.1 AB023189 NM_014930 CCDS35074 Q9Y2H8 10231032 ZNF510 565 +HGNC:28445 ZNF511 zinc finger protein 511 protein-coding gene gene with protein product Approved 10q26.3 10q26.3 MGC30006 Zinc fingers C2H2-type 28 2003-12-19 2015-08-27 118472 ENSG00000198546 OTTHUMG00000019317 uc001lmj.2 AK091711 NM_145806 CCDS7677 Q8NB15 21540836 MGI:1917002 RGD:1308585 ZNF511 +HGNC:38088 ZNF511-PRAP1 ZNF511-PRAP1 readthrough other readthrough Approved 10q26.3 10q26.3 2012-06-27 2012-06-27 104326056 ENSG00000283496 OTTHUMG00000191874 21540836 +HGNC:29380 ZNF512 zinc finger protein 512 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 KIAA1805 Zinc fingers C2H2-type 28 2003-12-19 2016-10-05 84450 ENSG00000243943 OTTHUMG00000097786 uc002rla.5 AL833748 NM_032434 "CCDS1758|CCDS59428|CCDS59429" Q96ME7 11347906 MGI:1917345 RGD:1561526 ZNF512 +HGNC:29212 ZNF512B zinc finger protein 512B protein-coding gene gene with protein product Approved 20q13.33 20q13.33 "GM632|MGC149845|MGC149846" 2007-03-20 2014-11-18 57473 ENSG00000196700 OTTHUMG00000033008 uc061yqm.1 AB033022 NM_020713 CCDS13548 Q96KM6 10574462 MGI:2685478 RGD:1305284 ZNF512B +HGNC:26498 ZNF513 zinc finger protein 513 protein-coding gene gene with protein product Approved 2p23.3 02p23.3 "FLJ32203|RP58" Zinc fingers C2H2-type 28 2003-12-19 2015-08-27 130557 ENSG00000163795 OTTHUMG00000097783 uc002rkk.4 AL833946 NM_144631 "CCDS1751|CCDS56114" Q8N8E2 20797688 MGI:2141255 RGD:1310456 ZNF513 613598 239967 538 +HGNC:25894 ZNF514 zinc finger protein 514 protein-coding gene gene with protein product Approved 2q11.1 02q11.1 FLJ14457 Zinc fingers C2H2-type 28 2003-12-19 2016-10-05 84874 ENSG00000144026 OTTHUMG00000130391 uc061lsz.1 AL832263 NM_032788 CCDS2011 Q96K75 ZNF514 344 +HGNC:28990 ZNF516 zinc finger protein 516 protein-coding gene gene with protein product Approved 18q23 18q23 "HsT287|KIAA0222" Zinc fingers C2H2-type 28 2004-01-08 2015-11-03 2015-11-03 2015-11-03 9658 ENSG00000101493 OTTHUMG00000165995 uc032hhr.2 D86975 NM_014643 CCDS74234 Q92618 9039502 MGI:2443957 RGD:1306817 ZNF516 615114 604 +HGNC:27984 ZNF517 zinc finger protein 517 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 Zinc fingers C2H2-type 28 2004-01-06 2014-11-19 340385 ENSG00000197363 OTTHUMG00000165199 uc003zed.1 AK096527 XM_291261 CCDS6434 Q6ZMY9 ZNF517 531 +HGNC:29009 ZNF518A zinc finger protein 518A protein-coding gene gene with protein product Approved 10q24.1 10q24.1 KIAA0335 ZNF518 zinc finger protein 518 Zinc fingers C2H2-type 28 2004-05-27 2007-12-07 2007-12-07 2016-10-05 9849 ENSG00000177853 OTTHUMG00000018828 uc031wpn.2 AB002333 NM_014803 CCDS73170 Q6AHZ1 9205841 MGI:1919922 RGD:1305314 ZNF518A +HGNC:29365 ZNF518B zinc finger protein 518B protein-coding gene gene with protein product Approved 4p16.1 04p16.1 KIAA1729 Zinc fingers C2H2-type 28 2007-12-07 2014-11-19 85460 ENSG00000178163 OTTHUMG00000160060 uc003gmn.4 AB051516 NM_053042 CCDS33960 Q9C0D4 11214970 MGI:2140750 RGD:1564150 ZNF518B +HGNC:30574 ZNF519 zinc finger protein 519 protein-coding gene gene with protein product Approved 18p11.21 18p11.21 "HsT2362|FLJ36809" similar to Zinc finger protein 85 (Zinc finger protein HPF4) (HTF1) Zinc fingers C2H2-type 28 2004-01-15 2014-11-18 162655 ENSG00000175322 OTTHUMG00000182055 uc002kst.3 BC024227 NM_145287 CCDS32797 Q8TB69 12477932 MGI:1930708 RGD:2323100 ZNF519 149 +HGNC:50785 ZNF519P1 zinc finger protein 519 pseudogene 1 pseudogene pseudogene Approved 10q22.3 10q22.3 2014-06-18 2016-10-05 100419873 ENSG00000232950 OTTHUMG00000018611 NG_025526 PGOHUM00000238860 +HGNC:50786 ZNF519P2 zinc finger protein 519 pseudogene 2 pseudogene pseudogene Approved 15q11.2 15q11.2 2014-06-18 2014-06-18 100287908 ENSG00000258799 OTTHUMG00000171707 NG_022098 PGOHUM00000246629 +HGNC:50787 ZNF519P3 zinc finger protein 519 pseudogene 3 pseudogene pseudogene Approved 15q11.2 15q11.2 2014-06-18 2014-06-18 100288042 ENSG00000258585 OTTHUMG00000171729 NG_022099 PGOHUM00000246641 +HGNC:50788 ZNF519P4 zinc finger protein 519 pseudogene 4 pseudogene pseudogene Approved 4p16.3 04p16.3 2014-06-18 2014-06-18 106481981 ENSG00000249025 OTTHUMG00000159864 NG_045048 PGOHUM00000263501 +HGNC:24605 ZNF521 zinc finger protein 521 protein-coding gene gene with protein product Approved 18q11.2 18q11.2 "EHZF|Evi3" early hematopoietic zinc finger Zinc fingers C2H2-type 28 2004-04-05 2014-11-19 25925 ENSG00000198795 OTTHUMG00000179511 uc002kvk.3 AK027354 NM_015461 "CCDS32806|CCDS77167" Q96K83 "11984006|14630787" MGI:95459 RGD:1307345 ZNF521 610974 150 +HGNC:30328 ZNF522 entry withdrawn withdrawn withdrawn Entry Withdrawn 2006-08-30 +HGNC:28322 ZNF524 zinc finger protein 524 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 MGC23143 Zinc fingers C2H2-type 28 2004-02-02 2015-08-26 147807 ENSG00000171443 OTTHUMG00000180859 uc002qlk.2 BC014666 NM_153219 CCDS12929 Q96C55 12477932 MGI:1916740 RGD:1565485 ZNF524 287 +HGNC:29423 ZNF525 zinc finger protein 525 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 KIAA1979 Zinc fingers C2H2-type 28 2004-02-02 2014-11-19 170958 ENSG00000203326 OTTHUMG00000158277 uc061cjl.1 AB075859 NR_003699 Q8N782 11853319 ZNF525 649 +HGNC:29415 ZNF526 zinc finger protein 526 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 "KIAA1951|MGC4267" Zinc fingers C2H2-type 28 2004-02-02 2015-08-26 116115 ENSG00000167625 OTTHUMG00000182785 uc002osz.2 AB075831 XM_057401 CCDS12598 Q8TF50 11853319 MGI:2445181 RGD:1588959 ZNF526 614387 240 +HGNC:29385 ZNF527 zinc finger protein 527 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 KIAA1829 Zinc fingers C2H2-type 28 2004-02-02 2016-10-05 84503 ENSG00000189164 OTTHUMG00000048173 uc010efk.2 "AB058732|AK091585" NM_032453 CCDS42559 Q8NB42 11347906 ZNF527 628 +HGNC:29384 ZNF528 zinc finger protein 528 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 KIAA1827 Zinc fingers C2H2-type 28 2004-02-02 2016-10-05 84436 ENSG00000167555 OTTHUMG00000156494 uc061cdk.1 AB058730 NM_032423 CCDS33091 Q3MIS6 11347906 ZNF528 615580 270 +HGNC:51305 ZNF528-AS1 ZNF528 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.41 19q13.41 2014-09-26 2014-09-26 102724105 ENSG00000269834 OTTHUMG00000182646 NR_125345 +HGNC:29328 ZNF529 zinc finger protein 529 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 KIAA1615 Zinc fingers C2H2-type 28 2004-02-02 2016-10-05 57711 ENSG00000186020 OTTHUMG00000180714 uc002oeh.5 AK025110 NM_020951 "CCDS54256|CCDS82335" Q6P280 10997877 ZNF529 222 +HGNC:51275 ZNF529-AS1 ZNF529 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2014-08-22 2014-08-22 101927599 ENSG00000233527 OTTHUMG00000048152 NR_110705 +HGNC:29297 ZNF530 zinc finger protein 530 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 KIAA1508 Zinc fingers C2H2-type 28 2004-02-02 2014-11-19 348327 ENSG00000183647 OTTHUMG00000183469 uc002qpk.3 AK096831 NM_020880 CCDS12955 Q6P9A1 10819331 ZNF530 311 +HGNC:30940 ZNF532 zinc finger protein 532 protein-coding gene gene with protein product Approved 18q21.32 18q21.32 FLJ10697 Zinc fingers C2H2-type 28 2004-02-03 2015-08-27 55205 ENSG00000074657 OTTHUMG00000132759 uc002lho.4 AB046849 NM_018181 CCDS11969 Q9HCE3 10997877 MGI:3036282 RGD:1311719 ZNF532 +HGNC:26337 ZNF534 zinc finger protein 534 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ25344 KRBO3 KRAB domain only 3 Zinc fingers C2H2-type 28 2004-02-02 2004-02-11 2004-02-06 2014-11-19 147658 ENSG00000198633 OTTHUMG00000156493 uc002pzk.4 AK058073 NM_182512 "CCDS46165|CCDS46166|CCDS77347|CCDS77348" Q76KX8 ZNF534 640 +HGNC:29025 ZNF536 zinc finger protein 536 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 KIAA0390 Zinc fingers C2H2-type 28 2004-02-09 2015-08-26 9745 ENSG00000198597 OTTHUMG00000182112 uc002nsu.2 NM_014717 CCDS32984 O15090 9205841 MGI:1926102 RGD:1563363 ZNF536 +HGNC:25331 ZNF540 zinc finger protein 540 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 DKFZp547B0714 Zinc fingers C2H2-type 28 2004-02-12 2014-11-19 163255 ENSG00000171817 OTTHUMG00000182053 uc002ogq.5 AL832315 NM_152606 "CCDS12506|CCDS54258" Q8NDQ6 RGD:6501656 ZNF540 613903 235 +HGNC:25294 ZNF541 zinc finger protein 541 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 DKFZp434I1930 "Zinc fingers C2H2-type|Myb/SANT domain containing" "28|532" 2004-02-12 2016-04-25 84215 ENSG00000118156 OTTHUMG00000141262 uc002phg.5 AL136846 NM_032255 CCDS46133 Q9H0D2 11230166 MGI:3647699 RGD:1310756 ZNF541 +HGNC:25393 ZNF542P zinc finger protein 542, pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 DKFZp686B2197 ZNF542 zinc finger protein 542 Zinc fingers C2H2-type 28 2004-02-12 2014-03-20 2014-03-20 2014-11-19 147947 ENSG00000240225 OTTHUMG00000140382 AL833621 NR_003127 Q5EBM4 292 +HGNC:25281 ZNF543 zinc finger protein 543 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 DKFZp434H055 Zinc fingers C2H2-type 28 2004-02-12 2014-11-19 125919 ENSG00000178229 OTTHUMG00000183243 uc002qoi.3 AL834534 XM_064865 CCDS33130 Q08ER8 ZNF543 616847 529 +HGNC:16759 ZNF544 zinc finger protein 544 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 AF020591 zinc finger protein AF020591 Zinc fingers C2H2-type 28 2004-02-12 2014-11-19 27300 ENSG00000198131 OTTHUMG00000183458 uc061dqu.1 AF020591 NM_014480 "CCDS12973|CCDS82411|CCDS82412|CCDS82413" Q6NX49 ZNF544 328 +HGNC:28671 ZNF546 zinc finger protein 546 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 MGC43537 ZNF49 Zinc fingers C2H2-type 28 2004-02-13 2014-11-19 339327 ENSG00000187187 OTTHUMG00000182578 uc002oms.3 BC045649 NM_178544 "CCDS12548|CCDS77297" Q86UE3 12477932 MGI:99156 ZNF546 239 +HGNC:26432 ZNF547 zinc finger protein 547 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ31100 Zinc fingers C2H2-type 28 2004-02-13 2014-11-19 284306 ENSG00000152433 OTTHUMG00000183246 uc002qol.4 AK055662 NM_173631 CCDS33131 Q8IVP9 ZNF547 303 +HGNC:26561 ZNF548 zinc finger protein 548 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ32932 Zinc fingers C2H2-type 28 2004-02-13 2014-11-19 147694 ENSG00000188785 OTTHUMG00000183281 uc002qom.5 AK057494 NM_152909 "CCDS46209|CCDS54324" Q8NEK5 12477932 ZNF548 304 +HGNC:26632 ZNF549 zinc finger protein 549 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ34917 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 256051 ENSG00000121406 OTTHUMG00000183465 uc002qpa.3 AK092236 NM_153263 "CCDS12952|CCDS56106" Q6P9A3 12477932 ZNF549 308 +HGNC:28643 ZNF550 zinc finger protein 550 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 MGC41917 Zinc fingers C2H2-type 28 2004-02-15 2016-04-25 162972 ENSG00000251369 OTTHUMG00000133709 uc002qpd.4 AL833214 NM_153231 CCDS35500 Q7Z398 12477932 ZNF550 309 +HGNC:25108 ZNF551 zinc finger protein 551 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 DKFZp686H1038 Zinc fingers C2H2-type 28 2004-02-15 2016-04-25 90233 ENSG00000204519 OTTHUMG00000183470 uc002qpw.6 BX538151 NM_138347 CCDS12959 Q7Z340 MGI:3588205 RGD:1592780 ZNF551 1193 +HGNC:26135 ZNF552 zinc finger protein 552 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ21603 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 79818 ENSG00000178935 OTTHUMG00000183478 uc002qqg.3 AK097041 NM_024762 CCDS12963 Q9H707 ZNF552 319 +HGNC:26629 ZNF554 zinc finger protein 554 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ34817 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 115196 ENSG00000172006 OTTHUMG00000180493 uc002lwm.3 AK027860 NM_152303 CCDS42462 Q86TJ5 12477932 ZNF554 162 +HGNC:28382 ZNF555 zinc finger protein 555 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 MGC26707 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 148254 ENSG00000186300 OTTHUMG00000180500 uc002lwo.4 AL832140 NM_152791 "CCDS12096|CCDS59329" Q8NEP9 12477932 ZNF555 163 +HGNC:25669 ZNF556 zinc finger protein 556 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 FLJ11637 Zinc fingers C2H2-type 28 2004-02-15 2015-08-27 80032 ENSG00000172000 OTTHUMG00000180501 uc002lwp.2 BC009374 NM_024967 "CCDS12097|CCDS74254" Q9HAH1 12477932 ZNF556 164 +HGNC:28632 ZNF557 zinc finger protein 557 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC4054 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 79230 ENSG00000130544 OTTHUMG00000181977 uc002mga.4 AK095524 NM_024341 "CCDS42485|CCDS45945" Q8N988 12477932 ZNF557 168 +HGNC:26422 ZNF558 zinc finger protein 558 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ30932 Zinc fingers C2H2-type 28 2004-02-15 2015-09-08 148156 ENSG00000167785 OTTHUMG00000182196 uc010dwg.2 AK055494 NM_144693 CCDS12208 Q96NG5 MGI:1921681 ZNF558 169 +HGNC:28197 ZNF559 zinc finger protein 559 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC13105 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 84527 ENSG00000188321 OTTHUMG00000179942 uc060sze.2 AL389937 NM_032497 "CCDS12211|CCDS59349|CCDS62531|CCDS62532" Q9BR84 12477932 ZNF559 172 +HGNC:42964 ZNF559-ZNF177 ZNF559-ZNF177 readthrough other readthrough Approved 19p13.2 19p13.2 2011-09-27 2013-10-15 100529215 ENSG00000270011 OTTHUMG00000183958 uc002mli.4 NM_001172650 CCDS56081 "MGI:2441662|MGI:3708667|MGI:3779822" +HGNC:26484 ZNF560 zinc finger protein 560 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ31986 Zinc fingers C2H2-type 28 2004-02-15 2015-09-08 147741 ENSG00000198028 OTTHUMG00000180130 uc002mlp.2 AK056548 NM_152476 CCDS12214 Q96MR9 MGI:1915280 ZNF560 170 +HGNC:28684 ZNF561 zinc finger protein 561 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC45408 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 93134 ENSG00000171469 OTTHUMG00000157054 uc002mlu.4 AK074787 NM_152289 "CCDS12216|CCDS82286" Q8N587 12477932 ZNF561 176 +HGNC:27613 ZNF561-AS1 ZNF561 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 19p13.2 19p13.2 C19orf82 chromosome 19 open reading frame 82 2013-06-06 2014-07-17 2014-07-17 2014-11-19 284385 ENSG00000267106 OTTHUMG00000180135 NR_122038 K7EIQ3 +HGNC:25950 ZNF562 zinc finger protein 562 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ20079 Zinc fingers C2H2-type 28 2004-02-15 2014-11-18 54811 ENSG00000171466 OTTHUMG00000180205 uc002mly.4 AK000086 NM_017656 "CCDS12217|CCDS45956|CCDS74280" Q6V9R5 ZNF562 177 +HGNC:30498 ZNF563 zinc finger protein 563 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ34797 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 147837 ENSG00000188868 OTTHUMG00000156413 uc002mtp.4 BC022523 NM_145276 CCDS12270 Q8TA94 MGI:2677168 RGD:1308729 ZNF563 188 +HGNC:31106 ZNF564 zinc finger protein 564 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 MGC26914 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 163050 ENSG00000249709 OTTHUMG00000156418 uc002mty.4 BC028367 NM_144976 CCDS42505 Q8TBZ8 ZNF564 612 +HGNC:26726 ZNF565 zinc finger protein 565 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ36991 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 147929 ENSG00000196357 OTTHUMG00000180508 uc002odo.5 AK094310 NM_152477 CCDS12491 Q8N9K5 MGI:107780 ZNF565 614275 218 +HGNC:25919 ZNF566 zinc finger protein 566 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "FLJ14779|MGC12515" Zinc fingers C2H2-type 28 2004-02-15 2015-09-08 84924 ENSG00000186017 OTTHUMG00000048148 uc002oea.4 AK074497 NM_032838 "CCDS12494|CCDS46061|CCDS74346" Q969W8 12477932 MGI:1919806 RGD:1563239 ZNF566 221 +HGNC:28696 ZNF567 zinc finger protein 567 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 MGC45586 Zinc fingers C2H2-type 28 2004-02-15 2014-11-18 163081 ENSG00000189042 OTTHUMG00000180898 uc010xtl.3 AK093034 NM_152603 "CCDS12495|CCDS74349" Q8N184 12477932 MGI:3045326 RGD:6484969 ZNF567 225 +HGNC:25392 ZNF568 zinc finger protein 568 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 DKFZp686B0797 Zinc fingers C2H2-type 28 2004-02-15 2014-11-18 374900 ENSG00000198453 OTTHUMG00000048160 uc002ofc.4 BX640681 NM_198539 "CCDS42558|CCDS56092|CCDS56093|CCDS74351" Q3ZCX4 RGD:1559509 ZNF568 227 +HGNC:24737 ZNF569 zinc finger protein 569 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "FLJ32053|ZAP1" Zinc fingers C2H2-type 28 2004-02-15 2015-09-11 148266 ENSG00000196437 OTTHUMG00000048172 uc002ogi.4 AL833408 NM_152484 "CCDS12503|CCDS82341" Q5MCW4 16793018 MGI:107784 RGD:1563223 ZNF569 613904 233 +HGNC:26416 ZNF570 zinc finger protein 570 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ30791 Zinc fingers C2H2-type 28 2004-02-15 2014-11-18 148268 ENSG00000171827 OTTHUMG00000048176 uc002ogk.2 AK055353 NM_144694 "CCDS12504|CCDS74355" Q96NI8 RGD:2323671 ZNF570 234 +HGNC:25000 ZNF571 zinc finger protein 571 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 HSPC059 Zinc fingers C2H2-type 28 2004-02-15 2014-11-18 51276 ENSG00000180479 OTTHUMG00000182016 uc002ogt.4 AF161544 NM_016536 CCDS12505 Q7Z3V5 11042152 ZNF571 236 +HGNC:44324 ZNF571-AS1 ZNF571 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2013-05-21 2013-05-21 100507433 ENSG00000267470 OTTHUMG00000182052 "BC042488|BX647800" NR_038247 +HGNC:26758 ZNF572 zinc finger protein 572 protein-coding gene gene with protein product Approved 8q24.13 08q24.13 FLJ38002 Zinc fingers C2H2-type 28 2004-02-15 2014-11-18 137209 ENSG00000180938 OTTHUMG00000164988 uc003yrr.4 BX537876 NM_152412 CCDS6354 Q7Z3I7 ZNF572 483 +HGNC:26420 ZNF573 zinc finger protein 573 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ30921 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 126231 ENSG00000189144 OTTHUMG00000048183 uc002ohe.3 AK074539 NM_152360 "CCDS12508|CCDS54260|CCDS59381" Q86YE8 12477932 ZNF573 238 +HGNC:26166 ZNF574 zinc finger protein 574 protein-coding gene gene with protein product Approved 19q13.2 19q13.2 FLJ22059 Zinc fingers C2H2-type 28 2004-02-15 2015-08-26 64763 ENSG00000105732 OTTHUMG00000182751 uc060zev.1 AK074788 NM_022752 "CCDS12596|CCDS82356" Q6ZN55 12477932 MGI:2442951 RGD:1311420 ZNF574 534 +HGNC:27606 ZNF575 zinc finger protein 575 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 FLJ32567 Zinc fingers C2H2-type 28 2004-02-15 2015-08-26 284346 ENSG00000176472 OTTHUMG00000182698 uc002ows.4 BC043611 NM_174945 CCDS12623 Q86XF7 MGI:2141921 RGD:1305025 ZNF575 241 +HGNC:28357 ZNF576 zinc finger protein 576 protein-coding gene gene with protein product Approved 19q13.31 19q13.31 MGC2508 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 79177 ENSG00000124444 OTTHUMG00000165479 uc002owz.3 AK026353 NM_024327 CCDS12625 Q9H609 12477932 ZNF576 +HGNC:28673 ZNF577 zinc finger protein 577 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 MGC4400 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 84765 ENSG00000161551 OTTHUMG00000157045 uc010yde.4 AL832871 NM_032679 "CCDS12842|CCDS46160" Q9BSK1 12477932 RGD:1584032 ZNF577 262 +HGNC:26449 ZNF578 zinc finger protein 578 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ31384 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 147660 ENSG00000258405 OTTHUMG00000156468 uc002pzp.5 AK095562 NM_152472 CCDS54310 Q96N58 271 +HGNC:26646 ZNF579 zinc finger protein 579 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 FLJ35453 Zinc fingers C2H2-type 28 2004-02-15 2015-08-26 163033 ENSG00000218891 OTTHUMG00000180857 uc002qlh.4 AK092772 NM_152600 CCDS12927 Q8NAF0 MGI:1915740 RGD:1308475 ZNF579 285 +HGNC:29473 ZNF580 zinc finger protein 580 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 Zinc fingers C2H2-type 28 2004-02-15 2015-09-10 51157 ENSG00000213015 OTTHUMG00000180868 uc002qlo.4 AF184939 NM_016202 CCDS12931 Q9UK33 21599657 MGI:1916242 RGD:1306892 ZNF580 +HGNC:25017 ZNF581 zinc finger protein 581 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "HSPC189|FLJ22550" Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 51545 ENSG00000171425 OTTHUMG00000180869 uc002qln.4 AK026203 NM_016535 CCDS12932 Q9P0T4 11042152 ZNF581 +HGNC:26421 ZNF582 zinc finger protein 582 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ30927 Zinc fingers C2H2-type 28 2004-02-15 2015-01-12 147948 ENSG00000018869 OTTHUMG00000181939 uc061dfm.1 AK055489 NM_144690 CCDS33121 Q96NG8 22815913 RGD:7617005 ZNF582 615600 293 +HGNC:25213 ZNF582-AS1 ZNF582 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 19q13.43 19q13.43 "ZNF582 antisense RNA 1 (non-protein coding)|ZNF582 antisense RNA 1" 2012-08-10 2012-08-16 2012-10-12 386758 ENSG00000267454 uc002qnb.3 "AW160702|BC036928" NR_037159 12477932 +HGNC:26427 ZNF583 zinc finger protein 583 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ31030 Zinc fingers C2H2-type 28 2004-02-15 2015-08-26 147949 ENSG00000198440 OTTHUMG00000168874 uc002qnc.3 AK055592 NM_152478 CCDS12943 Q96ND8 MGI:2682297 RGD:1562044 ZNF583 294 +HGNC:27318 ZNF584 zinc finger protein 584 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ39899 Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 201514 ENSG00000171574 OTTHUMG00000183533 uc002qsp.4 AK097218 NM_173548 "CCDS12979|CCDS82414" Q8IVC4 ZNF584 332 +HGNC:26305 ZNF585A zinc finger protein 585A protein-coding gene gene with protein product Approved 19q13.13 19q13.13 FLJ23765 Zinc fingers C2H2-type 28 2004-02-15 2014-11-18 199704 ENSG00000196967 OTTHUMG00000181857 uc002ofo.3 AK074345 NM_152655 "CCDS12499|CCDS74353" Q6P3V2 12477932 MGI:99174 ZNF585A 627 +HGNC:30948 ZNF585B zinc finger protein 585B protein-coding gene gene with protein product Approved 19q13.13 19q13.13 "FLJ14928|SZFP41" Zinc fingers C2H2-type 28 2004-02-15 2014-11-19 92285 ENSG00000245680 OTTHUMG00000048165 uc002ofq.3 AK027834 NM_152279 CCDS12500 Q52M93 12477932 ZNF585B 1210 +HGNC:25949 ZNF586 zinc finger protein 586 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ20070 Zinc fingers C2H2-type 28 2004-02-19 2014-11-19 54807 ENSG00000083828 OTTHUMG00000183477 uc002qqd.4 AK095993 NM_017652 "CCDS42640|CCDS56107|CCDS56108" Q9NXT0 12477932 ZNF586 318 +HGNC:30955 ZNF587 zinc finger protein 587 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "ZF6|FLJ14710|UBF-fl|FLJ20813" Zinc fingers C2H2-type 28 2004-02-19 2014-11-19 84914 ENSG00000198466 OTTHUMG00000154901 uc002qql.4 AF294842 NM_032828 "CCDS12964|CCDS56110" Q96SQ5 10520746 ZNF587 320 +HGNC:37142 ZNF587B zinc finger protein 587B protein-coding gene gene with protein product Approved 19q13.43 19q13.43 Zinc fingers C2H2-type 28 2012-02-01 2013-01-08 100293516 ENSG00000269343 OTTHUMG00000183479 uc061dnm.1 AK299091 NM_001204818 CCDS56109 E7ETH6 ZNF587B 653 +HGNC:42438 ZNF587P1 zinc finger protein 587 pseudogene 1 pseudogene pseudogene Approved 3p23 03p23 2011-07-27 2011-07-27 100419751 ENSG00000223965 OTTHUMG00000155827 NG_025682 PGOHUM00000237978 +HGNC:16747 ZNF589 zinc finger protein 589 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 SZF1 Zinc fingers C2H2-type 28 2004-02-26 2016-10-05 51385 ENSG00000164048 OTTHUMG00000156833 uc003csl.5 AF114816 NM_016089 CCDS43085 Q86UQ0 10029171 ZNF589 616702 392 +HGNC:28986 ZNF592 zinc finger protein 592 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "KIAA0211|CAMOS" SCAR5 spinocerebellar ataxia, autosomal recessive 5 Zinc fingers C2H2-type 28 2004-02-24 2015-08-26 9640 ENSG00000166716 OTTHUMG00000172490 uc002bld.4 D86966 NM_014630 CCDS32317 Q92610 "9039502|12030328|20531441" MGI:2443541 RGD:1308705 ZNF592 613624 244368 +HGNC:30943 ZNF593 zinc finger protein 593 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 ZT86 2004-02-27 2016-10-05 51042 ENSG00000142684 OTTHUMG00000007538 uc001bll.5 D45213 NM_015871 CCDS275 O00488 9115366 MGI:1915290 RGD:1310179 ZNF593 616698 +HGNC:29392 ZNF594 zinc finger protein 594 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 KIAA1871 Zinc fingers C2H2-type 28 2004-02-27 2016-10-05 84622 ENSG00000180626 OTTHUMG00000132059 uc010cla.2 AB058774 XM_290737 CCDS42241 Q96JF6 11347906 ZNF594 599 +HGNC:27196 ZNF595 zinc finger protein 595 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 FLJ31740 Zinc fingers C2H2-type 28 2004-03-01 2014-11-18 152687 ENSG00000272602 OTTHUMG00000159865 uc032szy.1 BX537887 NM_182524 "CCDS75075|CCDS75076|CCDS75077" Q8IYB9 12477932 MGI:3040707 ZNF595 405 +HGNC:27268 ZNF596 zinc finger protein 596 protein-coding gene gene with protein product Approved 8p23.3 08p23.3 Zinc fingers C2H2-type 28 2004-03-01 2014-11-19 169270 ENSG00000172748 OTTHUMG00000086931 uc033azn.1 BC026190 NM_173539 CCDS5951 Q8TC21 12477932 ZNF596 473 +HGNC:26573 ZNF597 zinc finger protein 597 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 "FLJ33071|HIT-4" Zinc fingers C2H2-type 28 2004-03-01 2016-10-12 146434 ENSG00000167981 OTTHUMG00000129359 uc002cvd.4 AK057633 NM_152457 CCDS10505 Q96LX8 19968752 MGI:1918313 RGD:628674 LRG_1066|http://www.lrg-sequence.org/LRG/LRG_1066 ZNF597 614685 106 +HGNC:28079 ZNF598 zinc finger protein 598 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ00086 Zinc fingers C2H2-type 28 2004-03-01 2015-08-26 90850 ENSG00000167962 OTTHUMG00000176955 uc002cof.3 BC029270 NM_178167 Q86UK7 MGI:2670965 RGD:1304900 ZNF598 +HGNC:26408 ZNF599 zinc finger protein 599 protein-coding gene gene with protein product Approved 19q13.13 19q13.13 FLJ30663 Zinc fingers C2H2-type 28 2004-03-05 2014-11-19 148103 ENSG00000153896 OTTHUMG00000182346 uc010edn.2 AK055225 XM_086046 CCDS32991 Q96NL3 RGD:6499588 ZNF599 39 +HGNC:30951 ZNF600 zinc finger protein 600 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "KR-ZNF1|DKFZp686F06123" Zinc fingers C2H2-type 28 2004-03-05 2014-11-18 162966 ENSG00000189190 OTTHUMG00000182686 uc002qab.5 U52096 NM_198457 CCDS12856 Q6ZNG1 12576331 ZNF600 276 +HGNC:29407 ZNF601P zinc finger protein 601, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 "dJ313I6.8|D6S2711|PRD51p" "zinc finger protein 601 pseudogene|zinc finger protein 601 (pseudogene)" 2004-11-25 2010-08-03 2015-10-30 493824 NG_029789 +HGNC:23313 ZNF602P zinc finger protein 602, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 dJ265C24.5 "zinc finger protein 602 pseudogene|zinc finger protein 602 (pseudogene)" 2004-11-25 2010-08-03 2015-10-30 100419608 ENSG00000219392 OTTHUMG00000014508 NG_025918 PGOHUM00000301714 +HGNC:23322 ZNF603P zinc finger protein 603, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 p373c6.7 "zinc finger protein 603 pseudogene|zinc finger protein 603 (pseudogene)" 2004-11-25 2010-08-03 2015-10-30 493821 ENSG00000216901 OTTHUMG00000014516 NG_032184 PGOHUM00000301715 +HGNC:19999 ZNF604P entry withdrawn withdrawn withdrawn Entry Withdrawn 2014-11-19 +HGNC:28068 ZNF605 zinc finger protein 605 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 Zinc fingers C2H2-type 28 2004-03-15 2009-09-11 2009-09-11 2015-09-10 100289635 ENSG00000196458 OTTHUMG00000167934 uc001ulh.4 AL832623 NM_183238 "CCDS31938|CCDS53850" Q86T29 MGI:2444933 RGD:2318406 ZNF605 77 +HGNC:25879 ZNF606 zinc finger protein 606 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "FLJ14260|KIAA1852" ZNF328 Zinc fingers C2H2-type 28 2004-03-18 2014-11-19 80095 ENSG00000166704 OTTHUMG00000169804 uc002qqw.4 AB058755 NM_025027 CCDS12968 Q8WXB4 11347906 MGI:1914620 RGD:1309810 ZNF606 613905 323 +HGNC:28192 ZNF607 zinc finger protein 607 protein-coding gene gene with protein product Approved 19q13.1 19q13.1 "MGC13071|FLJ14802" Zinc fingers C2H2-type 28 2004-03-18 2014-11-19 84775 ENSG00000198182 OTTHUMG00000182108 uc002ohc.2 AK127464 NM_032689 "CCDS33006|CCDS54259" Q96SK3 14702039 ZNF607 533 +HGNC:29238 ZNF608 zinc finger protein 608 protein-coding gene gene with protein product Approved 5q23.2 05q23.2 "KIAA1281|DKFZp434M098|NY-REN-36" Zinc fingers C2H2-type 28 2004-03-19 2015-09-10 57507 ENSG00000168916 OTTHUMG00000162999 uc003ktq.2 AB033107 XM_114432 CCDS34219 Q9ULD9 "10574462|10508479" MGI:2442338 RGD:1306824 ZNF608 +HGNC:29003 ZNF609 zinc finger protein 609 protein-coding gene gene with protein product Approved 15q22.1 15q22.1 KIAA0295 Zinc fingers C2H2-type 28 2004-03-19 2015-09-10 23060 ENSG00000180357 OTTHUMG00000172370 uc002ann.4 BC014251 XM_042833 CCDS32270 O15014 9205841 MGI:2674092 RGD:1561651 ZNF609 +HGNC:26687 ZNF610 zinc finger protein 610 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ36040 Zinc fingers C2H2-type 28 2004-03-29 2014-11-19 162963 ENSG00000167554 OTTHUMG00000182645 uc002pyx.5 AK093359 NM_173530 "CCDS12851|CCDS54309" Q8N9Z0 12477932 ZNF610 269 +HGNC:28766 ZNF611 zinc finger protein 611 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 MGC5384 Zinc fingers C2H2-type 28 2004-03-29 2016-10-05 81856 ENSG00000213020 OTTHUMG00000154908 uc010ydp.2 AK091389 NM_030972 "CCDS12855|CCDS54312" Q8N823 12477932 ZNF611 275 +HGNC:25827 ZNF613 zinc finger protein 613 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ13590 Zinc fingers C2H2-type 28 2004-03-29 2014-11-19 79898 ENSG00000176024 OTTHUMG00000182424 uc061bzl.1 AK027565 NM_024840 "CCDS12844|CCDS33089" Q6PF04 12477932 MGI:1919404 ZNF613 264 +HGNC:24722 ZNF614 zinc finger protein 614 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ21941 Zinc fingers C2H2-type 28 2004-03-29 2014-11-19 80110 ENSG00000142556 OTTHUMG00000182551 uc002pyj.4 BC022246 NM_025040 CCDS12847 Q8N883 12477932 ZNF614 266 +HGNC:24740 ZNF615 zinc finger protein 615 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ33710 Zinc fingers C2H2-type 28 2004-03-29 2014-11-19 284370 ENSG00000197619 OTTHUMG00000182550 uc002pye.3 AK096691 NM_198480 "CCDS12846|CCDS59418|CCDS82387" Q8N8J6 12477932 ZNF615 535 +HGNC:28062 ZNF616 zinc finger protein 616 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 MGC45556 Zinc fingers C2H2-type 28 2004-03-29 2014-11-19 90317 ENSG00000204611 OTTHUMG00000182566 uc002pym.4 AK092266 XM_030892 CCDS33090 Q08AN1 "MGI:1328322|MGI:2148252|MGI:3650650|MGI:3651014|MGI:3651978|MGI:3651986|MGI:3700963|MGI:3700965|MGI:3701604|MGI:3702694|MGI:3705222|MGI:3712454|MGI:5590069" ZNF616 545 +HGNC:29416 ZNF618 zinc finger protein 618 protein-coding gene gene with protein product Approved 9q32 09q32 "KIAA1952|NEDD10" neural precursor cell expressed, developmentally down-regulated 10 Zinc fingers C2H2-type 28 2004-04-15 2016-10-05 114991 ENSG00000157657 OTTHUMG00000020532 uc004bic.4 BC012922 XM_054983 "CCDS48008|CCDS83402|CCDS83403" Q5T7W0 11853319 MGI:1919950 RGD:1310743 ZNF618 617077 +HGNC:26910 ZNF619 zinc finger protein 619 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 FLJ90764 Zinc fingers C2H2-type 28 2004-04-15 2016-10-05 285267 ENSG00000177873 OTTHUMG00000131391 uc011azb.3 AK075245 NM_173656 "CCDS46801|CCDS46802|CCDS46803" Q8N2I2 ZNF619 384 +HGNC:50784 ZNF619P1 zinc finger protein 619 pseudogene 1 pseudogene pseudogene Approved 7p12.3 07p12.3 2014-06-18 2014-06-18 100419776 ENSG00000224547 OTTHUMG00000155473 NG_026563 PGOHUM00000233223 +HGNC:28742 ZNF620 zinc finger protein 620 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 MGC50836 Zinc fingers C2H2-type 28 2004-04-15 2016-10-05 253639 ENSG00000177842 OTTHUMG00000156044 uc003ckk.5 AK093599 XM_171060 "CCDS33740|CCDS58825" Q6ZNG0 12477932 ZNF620 553 +HGNC:24787 ZNF621 zinc finger protein 621 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 FLJ45246 Zinc fingers C2H2-type 28 2004-04-15 2016-10-05 285268 ENSG00000172888 OTTHUMG00000131389 uc003ckn.4 AK127181 NM_198484 "CCDS2693|CCDS74920" Q6ZSS3 ZNF621 50 +HGNC:30958 ZNF622 zinc finger protein 622 protein-coding gene gene with protein product Approved 5p15.1 05p15.1 "MGC2485|MGC17552|ZPR9" 2004-04-19 2014-11-18 90441 ENSG00000173545 OTTHUMG00000090567 uc003jfq.4 AY046059 NM_033414 CCDS3886 Q969S3 "11802789|12645566" MGI:1289282 RGD:1309146 ZNF622 608694 +HGNC:29084 ZNF623 zinc finger protein 623 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 KIAA0628 Zinc fingers C2H2-type 28 2004-04-20 2014-11-19 9831 ENSG00000183309 OTTHUMG00000165186 uc003yzd.3 AB014528 NM_014789 "CCDS34957|CCDS47931" O75123 9734811 MGI:1926084 RGD:7635192 ZNF623 570 +HGNC:29254 ZNF624 zinc finger protein 624 protein-coding gene gene with protein product Approved 17p11.2 17p11.2 KIAA1349 Zinc fingers C2H2-type 28 2004-04-22 2014-11-19 57547 ENSG00000197566 OTTHUMG00000058996 uc010cpi.3 AB037770 XM_047617 CCDS11180 Q9P2J8 10718198 MGI:3809197 RGD:6503044 ZNF624 532 +HGNC:30571 ZNF625 zinc finger protein 625 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Zinc fingers C2H2-type 28 2004-04-22 2016-04-25 90589 ENSG00000257591 OTTHUMG00000156407 uc010dyo.3 BC007868 NM_145233 CCDS12269 Q96I27 12477932 ZNF625 186 +HGNC:48368 ZNF625-ZNF20 ZNF625-ZNF20 readthrough (NMD candidate) other readthrough Approved 19p13.2 19p13.2 2013-05-14 2013-05-14 100529855 ENSG00000213297 OTTHUMG00000170135 NR_037802 RGD:7665176 +HGNC:30461 ZNF626 zinc finger protein 626 protein-coding gene gene with protein product Approved 19p13.11 19p13.11 Zinc fingers C2H2-type 28 2004-04-22 2014-11-19 199777 ENSG00000188171 OTTHUMG00000179733 uc060wew.1 BC007116 NM_145297 "CCDS32976|CCDS42535" Q68DY1 12477932 ZNF626 617 +HGNC:30570 ZNF627 zinc finger protein 627 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ90365 Zinc fingers C2H2-type 28 2004-04-22 2014-11-19 199692 ENSG00000198551 OTTHUMG00000182035 uc002msk.3 AK074846 NM_145295 CCDS42502 Q7L945 12477932 MGI:2681848 ZNF627 612248 179 +HGNC:28054 ZNF628 zinc finger protein 628 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "ZEC|Zfp628" Zinc finger expressed in Embryonal cells and Certain adult organs Zinc fingers C2H2-type 28 2005-04-12 2016-10-05 89887 ENSG00000197483 OTTHUMG00000150396 uc002qld.3 AF367249 XM_058964 CCDS33116 Q5EBL2 MGI:2665174 RGD:2323809 ZNF628 610671 763 +HGNC:29008 ZNF629 zinc finger protein 629 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 KIAA0326 ZNF65 zinc finger protein 65 Zinc fingers C2H2-type 28 2004-04-23 2014-11-19 23361 ENSG00000102870 OTTHUMG00000176905 uc002dzs.1 AB002324 NM_015309 CCDS45463 Q9UEG4 9205841 MGI:2444524 ZNF629 594 +HGNC:28855 ZNF630 zinc finger protein 630 protein-coding gene gene with protein product Approved Xp11.23 Xp11.23 "BC037316|dJ54B20.2|FLJ20573|MGC138344" Zinc fingers C2H2-type 28 2004-05-27 2016-10-05 57232 ENSG00000221994 OTTHUMG00000021463 uc022bvs.2 AK000580 NM_001037735 "CCDS35237|CCDS75971" Q2M218 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF630 ZNF630 300819 1042 +HGNC:41215 ZNF630-AS1 ZNF630 antisense RNA 1 non-coding RNA RNA, long non-coding Approved Xp11.23 Xp11.23 ZNF630 antisense RNA 1 (non-protein coding) 2011-07-29 2012-08-15 2015-02-02 100874120 ENSG00000277541 OTTHUMG00000021461 uc033ecd.2 NR_046742 +HGNC:17894 ZNF638 zinc finger protein 638 protein-coding gene gene with protein product Approved 2p13.3-p13.2 02p13.3-p13.2 "NP220|MGC26130|Zfp638" ZFML zinc finger, matrin-like RNA binding motif containing 725 2004-07-02 2004-07-30 2004-07-29 2016-10-11 27332 ENSG00000075292 OTTHUMG00000129735 uc002sia.4 D83032 NM_014497 CCDS1917 Q14966 8647861 MGI:1203484 RGD:1309746 ZNF638 614349 +HGNC:41434 ZNF638-IT1 ZNF638 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 2p13.2 02p13.2 ZNF638 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100507113 ENSG00000281195 OTTHUMG00000189547 uc061kmy.1 BC044944 +HGNC:30950 ZNF639 zinc finger protein 639 protein-coding gene gene with protein product Approved 3q26.33 03q26.33 "ANC-2H01|ZASC1" zinc finger amplified in esophageal squamous cell carcinomas 1 Zinc fingers C2H2-type 28 2004-07-30 2016-10-05 51193 ENSG00000121864 OTTHUMG00000157439 uc003fjr.2 BC020500 NM_016331 CCDS3227 Q9UID6 14522885 MGI:1915028 RGD:1585689 ZNF639 403 +HGNC:31834 ZNF641 zinc finger protein 641 protein-coding gene gene with protein product Approved 12q13.11 12q13.11 FLJ31295 Zinc fingers C2H2-type 28 2005-05-04 2015-05-18 121274 ENSG00000167528 OTTHUMG00000169906 uc058nha.1 BC018090 NM_152320 "CCDS8763|CCDS53787|CCDS53788" Q96N77 MGI:2442788 RGD:1310412 ZNF641 613906 69 +HGNC:29222 ZNF644 zinc finger protein 644 protein-coding gene gene with protein product Approved 1p22.2 01p22.2 "KIAA1221|BM-005|MGC60165|MGC70410" 2004-11-08 2014-11-19 84146 ENSG00000122482 OTTHUMG00000010078 uc001dnw.4 AB033047 NM_032186 "CCDS731|CCDS732" Q9H582 10574462 MGI:1277212 RGD:1306805 ZNF644 614159 +HGNC:26371 ZNF645 zinc finger protein 645 protein-coding gene gene with protein product Approved Xp22.11 Xp22.11 "FLJ25735|HAKAIL|CT138" 2004-11-16 2015-07-06 158506 ENSG00000175809 OTTHUMG00000021242 uc004dai.4 AK098601 NM_152577 CCDS14205 Q8N7E2 20657603 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF645 ZNF645 +HGNC:29004 ZNF646 zinc finger protein 646 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 KIAA0296 Zinc fingers C2H2-type 28 2004-12-08 2015-07-14 9726 ENSG00000167395 OTTHUMG00000047355 uc002eap.4 AB002294 NM_014699 CCDS10702 O15015 MGI:3665412 RGD:1561579 ZNF646 118 +HGNC:39749 ZNF646P1 zinc finger protein 646 pseudogene 1 pseudogene pseudogene Approved 13q14.3 13q14.3 2011-03-25 2015-10-30 100419854 ENSG00000274316 OTTHUMG00000187806 NG_024858 PGOHUM00000291966 +HGNC:18190 ZNF648 zinc finger protein 648 protein-coding gene gene with protein product Approved 1q25.3 01q25.3 FLJ46813 Zinc fingers C2H2-type 28 2004-10-18 2015-09-10 127665 ENSG00000179930 OTTHUMG00000037302 uc001goz.3 AK128654 XM_060597 CCDS30952 Q5T619 MGI:2685049 RGD:2323778 ZNF648 1121 +HGNC:25741 ZNF649 zinc finger protein 649 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ12644 Zinc fingers C2H2-type 28 2006-02-02 2014-11-19 65251 ENSG00000198093 OTTHUMG00000182423 uc002pxy.4 BC005368 NM_023074 CCDS12843 Q9BS31 15950191 ZNF649 611903 263 +HGNC:51285 ZNF649-AS1 ZNF649 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.41 19q13.41 2014-08-28 2014-08-28 101928571 ENSG00000268095 OTTHUMG00000182422 NR_110733 +HGNC:29147 ZNF652 zinc finger protein 652 protein-coding gene gene with protein product Approved 17q21.32 17q21.32 KIAA0924 Zinc fingers C2H2-type 28 2005-01-07 2015-08-26 22834 ENSG00000198740 OTTHUMG00000161322 uc002iow.4 AB023141 NM_014897 CCDS32677 Q9Y2D9 10231032 MGI:2442221 RGD:1566329 ZNF652 613907 +HGNC:35166 ZNF652P1 zinc finger protein 652 pseudogene 1 pseudogene pseudogene Approved 3p21.2 03p21.2 ZNF652P zinc finger protein 652 pseudogene 2008-10-09 2009-11-20 2009-11-20 2016-10-05 646592 ENSG00000235278 OTTHUMG00000156856 XM_929528 PGOHUM00000237627 813 +HGNC:25196 ZNF653 zinc finger protein 653 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Zip67 Zinc fingers C2H2-type 28 2005-01-07 2013-01-08 115950 ENSG00000161914 OTTHUMG00000182032 uc002mrz.2 AY072704 NM_138783 CCDS12261 Q96CK0 12477932 MGI:2442362 RGD:1308754 ZNF653 611371 +HGNC:25612 ZNF654 zinc finger protein 654 protein-coding gene gene with protein product Approved 3p11.1 03p11.1 "FLJ10997|FLJ21142" 2005-01-10 2005-01-10 55279 ENSG00000175105 OTTHUMG00000159097 uc003dqv.4 AF543494 NM_018293 CCDS46874 Q8IZM8 MGI:1919270 RGD:1308321 ZNF654 +HGNC:30899 ZNF655 zinc finger protein 655 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "VIK-1|VIK" Zinc fingers C2H2-type 28 2005-01-11 2015-08-17 79027 ENSG00000197343 OTTHUMG00000185968 uc003urj.5 AY099353 NM_138494 "CCDS5669|CCDS5670|CCDS34695|CCDS47655" Q8N720 "11179890|15558030" MGI:1919861 RGD:1309158 ZNF655 457 +HGNC:25226 ZNF658 zinc finger protein 658 protein-coding gene gene with protein product Approved 9q21.11 09q21.11 "MGC35232|DKFZp572C163|FLJ32813" Zinc fingers C2H2-type 28 2005-01-20 2016-10-05 26149 ENSG00000274349 OTTHUMG00000188361 uc004abs.2 AA482262 NM_033160 CCDS75846 Q5TYW1 "MGI:1923640|MGI:3648947|MGI:3650906" RGD:7740563 ZNF658 616290 563 +HGNC:32033 ZNF658B zinc finger protein 658B (pseudogene) pseudogene pseudogene Approved 9p12 09p12 zinc finger protein 658B 2005-08-30 2016-01-06 2016-10-05 401509 ENSG00000198416 OTTHUMG00000171406 AK095694 NM_001032297 Q4V348 ZNF658B PGOHUM00000303804 678 +HGNC:26720 ZNF660 zinc finger protein 660 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 FLJ36870 Zinc fingers C2H2-type 28 2005-02-07 2016-10-05 285349 ENSG00000144792 OTTHUMG00000133097 uc003cnl.2 AK094189 NM_173658 CCDS2716 Q6AZW8 MGI:3645415 RGD:11394460 ZNF660 387 +HGNC:31930 ZNF662 zinc finger protein 662 protein-coding gene gene with protein product Approved 3p22.1 03p22.1 FLJ45880 Zinc fingers C2H2-type 28 2005-03-04 2014-11-19 389114 ENSG00000182983 OTTHUMG00000133041 uc003cmk.3 AK127779 NM_207404 "CCDS2708|CCDS46807" Q6ZS27 ZNF662 386 +HGNC:25342 ZNF663P zinc finger protein 663, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 DKFZp547G0215 ZNF663 zinc finger protein 663 Zinc fingers C2H2-type 28 2005-03-17 2013-09-26 2013-09-26 2014-03-13 100130934 ENSG00000215452 OTTHUMG00000032648 NM_173643 MGI:2685854 PGOHUM00000250546 367 +HGNC:25406 ZNF664 zinc finger protein 664 protein-coding gene gene with protein product Approved 12q24.31 12q24.31 "ZFOC1|DKFZp761B128" zinc finger, organ of Corti 1 ZNF176 zinc finger protein 176 Zinc fingers C2H2-type 28 2005-03-17 2015-09-10 144348 ENSG00000179195 OTTHUMG00000168596 uc058uwb.1 NM_152437 CCDS9257 Q8N3J9 21695231 MGI:2442505 RGD:6491226 ZNF664 76 +HGNC:25885 ZNF665 zinc finger protein 665 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 FLJ14345 Zinc fingers C2H2-type 28 2005-03-17 2014-11-19 79788 ENSG00000197497 OTTHUMG00000182885 uc010eqm.2 NM_024733 CCDS46169 Q9H7R5 MGI:108187 RGD:2319215 ZNF665 282 +HGNC:28854 ZNF667 zinc finger protein 667 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ14011 Zinc fingers C2H2-type 28 2005-03-18 2015-09-10 63934 ENSG00000198046 OTTHUMG00000181941 uc002qnd.4 NM_022103 CCDS12944 Q5HYK9 MGI:2442757 RGD:1359114 ZNF667 611024 295 +HGNC:44321 ZNF667-AS1 ZNF667 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 19q13.43 19q13.43 MORT 2013-05-21 2016-05-25 100128252 ENSG00000166770 OTTHUMG00000181942 "AW955601|BC110411" NR_036521 26646903 +HGNC:25821 ZNF668 zinc finger protein 668 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ13479 Zinc fingers C2H2-type 28 2005-03-18 2015-01-12 79759 ENSG00000167394 OTTHUMG00000047357 uc002eao.4 NM_024706 "CCDS10701|CCDS54003" Q96K58 "21852383|23777805" MGI:2442943 RGD:1308623 ZNF668 617103 117 +HGNC:25736 ZNF669 zinc finger protein 669 protein-coding gene gene with protein product Approved 1q44 01q44 FLJ12606 Zinc fingers C2H2-type 28 2005-03-18 2014-11-19 79862 ENSG00000188295 OTTHUMG00000040869 uc001ice.3 NM_024804 "CCDS31088|CCDS44345" Q96BR6 12477932 MGI:4867078 ZNF669 33 +HGNC:28167 ZNF670 zinc finger protein 670 protein-coding gene gene with protein product Approved 1q44 01q44 MGC12466 Zinc fingers C2H2-type 28 2005-03-18 2015-08-03 93474 ENSG00000277462 OTTHUMG00000040868 uc001icd.3 NM_033213 CCDS31087 Q9BS34 12477932 RGD:1597136 ZNF670 355 +HGNC:49200 ZNF670-ZNF695 ZNF670-ZNF695 readthrough (NMD candidate) other readthrough Approved 1q44 01q44 2013-09-30 2015-08-17 100533111 ENSG00000135747 OTTHUMG00000187277 NR_037894 +HGNC:26279 ZNF671 zinc finger protein 671 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ23506 hypothetical protein FLJ23506 Zinc fingers C2H2-type 28 2005-03-25 2014-11-19 79891 ENSG00000083814 OTTHUMG00000183476 uc002qpz.5 NM_024833 CCDS12961 Q8TAW3 12477932 ZNF671 316 +HGNC:26179 ZNF672 zinc finger protein 672 protein-coding gene gene with protein product Approved 1q44 01q44 FLJ22301 hypothetical protein FLJ22301 Zinc fingers C2H2-type 28 2005-03-25 2014-11-19 79894 ENSG00000171161 OTTHUMG00000040377 uc001iex.4 AK027476 NM_024836 CCDS1638 Q499Z4 12477932 MGI:2442105 RGD:1359094 ZNF672 36 +HGNC:17625 ZNF674 zinc finger protein 674 protein-coding gene gene with protein product Approved Xp11.3 Xp11.3 ZNF673B MRX92 "Zinc fingers C2H2-type|X-linked mental retardation" "28|103" 2005-10-27 2010-09-15 2013-01-08 641339 ENSG00000251192 OTTHUMG00000021420 uc004dgr.4 AY971607 NM_001039891 "CCDS48099|CCDS55406" Q2M3X9 16385466 ZNF674 300573 1043 +HGNC:44266 ZNF674-AS1 ZNF674 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved Xp11.3 Xp11.3 "ZNF674 antisense RNA 1 (non-protein coding)|ZNF674 antisense RNA 1" 2012-08-02 2012-10-17 2016-10-05 401588 ENSG00000230844 OTTHUMG00000021424 uc004dgs.6 "BC034616|DA707714" NR_015378 +HGNC:30768 ZNF675 zinc finger protein 675 protein-coding gene gene with protein product Approved 19p12 19p12 "TIZ|TBZF" TRAF6 inhibitory zinc finger Zinc fingers C2H2-type 28 2005-03-28 2014-11-19 171392 ENSG00000197372 OTTHUMG00000183384 uc002nri.4 NM_138330 CCDS32981 Q8TD23 11751921 ZNF675 210 +HGNC:20429 ZNF676 zinc finger protein 676 protein-coding gene gene with protein product Approved 19p12 19p12 Zinc fingers C2H2-type 28 2005-03-30 2013-01-08 163223 ENSG00000196109 OTTHUMG00000182934 uc002nqs.2 AK097798 NM_001001411 CCDS42539 Q8N7Q3 MGI:3036278 ZNF676 348 +HGNC:28730 ZNF677 zinc finger protein 677 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 MGC48625 hypothetical protein MGC48625 Zinc fingers C2H2-type 28 2005-03-31 2015-01-12 342926 ENSG00000197928 OTTHUMG00000182890 uc002qbg.2 BC050038 NM_182609 CCDS12861 Q86XU0 25504438 ZNF677 283 +HGNC:28652 ZNF678 zinc finger protein 678 protein-coding gene gene with protein product Approved 1q42.13 01q42.13 MGC42493 hypothetical protein MGC42493 Zinc fingers C2H2-type 28 2005-03-31 2014-11-19 339500 ENSG00000181450 OTTHUMG00000037700 uc001hqw.3 BC042500 NM_178549 Q5SXM1 12477932 ZNF678 28 +HGNC:28650 ZNF679 zinc finger protein 679 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 MGC42415 hypothetical protein MGC42415 Zinc fingers C2H2-type 28 2005-03-31 2014-11-19 168417 ENSG00000197123 OTTHUMG00000156486 uc003tsx.3 BC033523 NM_153363 CCDS47592 Q8IYX0 12477932 ZNF679 448 +HGNC:26897 ZNF680 zinc finger protein 680 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 FLJ90430 hypothetical protein FLJ90430 Zinc fingers C2H2-type 28 2005-03-31 2014-11-19 340252 ENSG00000173041 OTTHUMG00000156542 uc003tta.3 AK074911 NM_178558 "CCDS34644|CCDS47594" Q8NEM1 12477932 ZNF680 449 +HGNC:50379 ZNF680P1 ZNF680 pseudogene 1 pseudogene pseudogene Approved 7q11.21 07q11.21 2014-04-24 2014-04-24 728947 ENSG00000228014 OTTHUMG00000156541 NG_022565 PGOHUM00000233359 +HGNC:26457 ZNF681 zinc finger protein 681 protein-coding gene gene with protein product Approved 19p12 19p12 FLJ31526 hypothetical protein FLJ31526 Zinc fingers C2H2-type 28 2005-03-31 2014-11-19 148213 ENSG00000196172 OTTHUMG00000150831 uc002nrk.4 AK056088 NM_138286 CCDS12414 Q96N22 ZNF681 211 +HGNC:28857 ZNF682 zinc finger protein 682 protein-coding gene gene with protein product Approved 19p12 19p12 BC39498_3 Zinc fingers C2H2-type 28 2005-03-31 2014-11-19 91120 ENSG00000197124 OTTHUMG00000182650 uc002noq.4 AC006539 NM_033196 "CCDS42533|CCDS42534" O95780 ZNF682 200 +HGNC:28495 ZNF683 zinc finger protein 683 protein-coding gene gene with protein product Approved 1p36.11 01p36.11 "MGC33414|Hobit" homolog of Blimp-1 in T cells Zinc fingers C2H2-type 28 2005-03-31 2015-08-26 257101 ENSG00000176083 OTTHUMG00000003521 uc001bmh.2 BC029505 NM_173574 "CCDS279|CCDS76126" Q8IZ20 22885984 MGI:3650254 RGD:2323855 ZNF683 616775 +HGNC:28418 ZNF684 zinc finger protein 684 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 MGC27466 hypothetical protein MGC27466 Zinc fingers C2H2-type 28 2005-04-03 2014-11-19 127396 ENSG00000117010 OTTHUMG00000007359 uc001cft.2 NM_152373 CCDS454 Q5T5D7 12477932 ZNF684 15 +HGNC:29277 ZNF687 zinc finger protein 687 protein-coding gene gene with protein product Approved 1q21.3 01q21.3 KIAA1441 2005-05-06 2016-10-05 57592 ENSG00000143373 OTTHUMG00000012347 uc001exq.4 NM_020832 CCDS992 Q8N1G0 10718198 MGI:1925516 RGD:2323182 ZNF687 610568 451453 +HGNC:30489 ZNF688 zinc finger protein 688 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 Zinc fingers C2H2-type 28 2005-05-09 2014-11-19 146542 ENSG00000229809 OTTHUMG00000132408 uc002dyt.4 AK122680 NM_145271 "CCDS10684|CCDS42151" P0C7X2 10493829 MGI:1916484 ZNF688 784 +HGNC:25173 ZNF689 zinc finger protein 689 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ90415 Zinc fingers C2H2-type 28 2005-05-09 2014-11-19 115509 ENSG00000156853 OTTHUMG00000132415 uc002dyx.5 BC014000 NM_138447 CCDS10686 Q96CS4 MGI:1918381 RGD:628696 ZNF689 116 +HGNC:28028 ZNF691 zinc finger protein 691 protein-coding gene gene with protein product Approved 1p34.2 01p34.2 Zfp691 Zinc fingers C2H2-type 28 2005-05-13 2014-11-19 51058 ENSG00000164011 OTTHUMG00000007623 uc001cig.4 NM_015911 "CCDS476|CCDS55595" Q5VV52 "8619474|9110174" MGI:3041163 RGD:1308150 ZNF691 17 +HGNC:26049 ZNF692 zinc finger protein 692 protein-coding gene gene with protein product Approved 1q44 01q44 "FLJ20531|Zfp692|AREBP" AICAR responsive element binding protein Zinc fingers C2H2-type 28 2005-05-13 2015-01-12 55657 ENSG00000171163 OTTHUMG00000040423 uc001ifc.3 BC002948 NM_017865 "CCDS31127|CCDS44348|CCDS53487" Q9BU19 17097062 MGI:2144276 RGD:1306740 ZNF692 +HGNC:30954 ZNF695 zinc finger protein 695 protein-coding gene gene with protein product Approved 1q44 01q44 SBZF3 Zinc fingers C2H2-type 28 2005-05-23 2015-01-12 57116 ENSG00000197472 OTTHUMG00000040707 uc009xgu.4 NM_020394 "CCDS44344|CCDS55694" Q8IW36 24007497 ZNF695 616348 31 +HGNC:25872 ZNF696 zinc finger protein 696 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 FLJ14129 Zinc fingers C2H2-type 28 2005-05-30 2014-11-19 79943 ENSG00000185730 OTTHUMG00000164957 uc003yxy.5 AK024191 NM_030895 CCDS6399 Q9H7X3 ZNF696 487 +HGNC:32034 ZNF697 zinc finger protein 697 protein-coding gene gene with protein product Approved 1p12 01p12 MGC45731 Zinc fingers C2H2-type 28 2005-07-05 2014-11-19 90874 ENSG00000143067 OTTHUMG00000012962 uc001ehy.2 "AK027019|BC033126" XM_371286 CCDS44202 Q5TEC3 MGI:2139736 RGD:1308711 ZNF697 583 +HGNC:24750 ZNF699 zinc finger protein 699 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "FLJ38144|hang" Zinc fingers C2H2-type 28 2005-08-11 2014-11-18 374879 ENSG00000196110 OTTHUMG00000179941 uc060syk.1 BC109268 NM_198535 CCDS42495 Q32M78 16940975 ZNF699 609571 605 +HGNC:25292 ZNF700 zinc finger protein 700 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 DKFZp434I1610 Zinc fingers C2H2-type 28 2005-08-11 2014-11-18 90592 ENSG00000196757 OTTHUMG00000156421 uc002msu.5 AL136732 NM_144566 "CCDS32915|CCDS74289" Q9H0M5 "MGI:3642406|MGI:3779761|MGI:5011613|MGI:5590873" ZNF700 379 +HGNC:25597 ZNF701 zinc finger protein 701 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 FLJ10891 Zinc fingers C2H2-type 28 2005-08-12 2014-11-19 55762 ENSG00000167562 OTTHUMG00000182754 uc002pzs.3 AK001753 NM_018260 "CCDS33092|CCDS54311" Q9NV72 ZNF701 272 +HGNC:25775 ZNF702P zinc finger protein 702, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 FLJ12985 ZNF702 "zinc finger protein 702|zinc finger protein 702 pseudogene|zinc finger protein 702 (pseudogene)" 2005-08-12 2008-07-03 2010-08-03 2014-11-19 79986 ENSG00000242779 OTTHUMG00000150515 NM_024924 Q9H963 278 +HGNC:25883 ZNF703 zinc finger protein 703 protein-coding gene gene with protein product Approved 8p12 08p12 "FLJ14299|ZNF503L|NLZ1|Zpo1|ZEPPO1" zinc finger elbow-related proline domain protein 1 2005-08-16 2015-09-10 80139 ENSG00000183779 OTTHUMG00000164001 uc003xjy.2 AK024361 NM_025069 CCDS6094 Q9H7S9 "15897872|21317240" MGI:2662729 RGD:1588249 ZNF703 617045 +HGNC:32291 ZNF704 zinc finger protein 704 protein-coding gene gene with protein product Approved 8q21.13 08q21.13 "FLJ16218|Gig1" 2005-09-27 2014-11-19 619279 ENSG00000164684 OTTHUMG00000164733 uc003yby.2 AK131274 NM_001033723 CCDS34913 Q6ZNC4 MGI:2180715 RGD:1563869 ZNF704 +HGNC:32281 ZNF705A zinc finger protein 705A protein-coding gene gene with protein product Approved 12p13.31 12p13.31 FLJ16353 Zinc fingers C2H2-type 28 2005-09-22 2005-09-22 2014-11-19 440077 ENSG00000196946 OTTHUMG00000168635 uc058kvq.1 AK131339 NM_001004328 CCDS31737 Q6ZN79 MGI:3036291 RGD:1359109 ZNF705A 548 +HGNC:32284 ZNF705B zinc finger protein 705B protein-coding gene gene with protein product Approved 8p23.1 08p23.1 Zinc fingers C2H2-type 28 2005-09-22 2013-01-08 100132396 ENSG00000215356 OTTHUMG00000165401 uc010lro.1 NM_001193630 CCDS55194 P0CI00 ZNF705B +HGNC:32283 ZNF705CP zinc finger protein 705C, pseudogene pseudogene pseudogene Approved 8p23.1 08p23.1 ZNF705C zinc finger protein 705C (pseudogene) 2005-09-22 2015-05-27 2012-09-17 2015-05-27 389631 ENSG00000215339 OTTHUMG00000165457 NG_005518 +HGNC:33202 ZNF705D zinc finger protein 705D protein-coding gene gene with protein product Approved 8p23.1 08p23.1 Zinc fingers C2H2-type 28 2006-12-21 2014-11-19 728957 ENSG00000215343 OTTHUMG00000165474 uc064kiq.1 BC110823 NM_001039615 CCDS43712 P0CH99 ZNF705D 1103 +HGNC:33203 ZNF705E zinc finger protein 705E protein-coding gene gene with protein product Approved 11q13.4 11q13.4 2006-12-21 2016-09-27 100131539 ENSG00000214534 OTTHUMG00000167482 NM_001278713 A8MWA4 PGOHUM00000258570 1123 +HGNC:33204 ZNF705F zinc finger protein 705F other unknown Approved 8p23.1 08p23.1 Zinc fingers C2H2-type 28 2006-12-21 2014-11-19 790969 A8MVS1 +HGNC:37134 ZNF705G zinc finger protein 705G protein-coding gene gene with protein product Approved 8p23.1 08p23.1 Zinc fingers C2H2-type 28 2009-07-20 2014-11-18 100131980 ENSG00000215372 OTTHUMG00000165384 uc033bav.2 XM_001720517 CCDS47773 A8MUZ8 ZNF705G 1035 +HGNC:24992 ZNF706 zinc finger protein 706 protein-coding gene gene with protein product Approved 8q22.3 08q22.3 HSPC038 2005-09-22 2015-09-10 51123 ENSG00000120963 OTTHUMG00000164823 uc064pdj.1 AF125099 NM_016096 CCDS6291 Q9Y5V0 11042152 MGI:1915286 RGD:1563959 ZNF706 +HGNC:27815 ZNF707 zinc finger protein 707 protein-coding gene gene with protein product Approved 8q24.3 08q24.3 Zinc fingers C2H2-type 28 2005-09-23 2016-06-14 286075 ENSG00000181135 OTTHUMG00000165146 uc010mfh.4 AK001126 NM_173831 CCDS47932 Q96C28 12477932 MGI:1916270 RGD:1311188 ZNF707 488 +HGNC:12945 ZNF708 zinc finger protein 708 protein-coding gene gene with protein product Approved 19p12 19p12 KOX8 "ZNF15|ZNF15L1" "zinc finger protein 15-like 1 (KOX 8)|zinc finger protein 708|zinc finger protein 708 (KOX8)" Zinc fingers C2H2-type 28 1990-06-13 2005-08-16 2006-08-22 2014-11-19 7562 ENSG00000182141 OTTHUMG00000182841 uc002npq.2 X52339 NM_021269 CCDS32980 P17019 2014798 ZNF708 576 +HGNC:20629 ZNF709 zinc finger protein 709 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ38281 Zinc fingers C2H2-type 28 2005-10-04 2014-11-19 163051 ENSG00000242852 OTTHUMG00000156406 uc002mtv.5 AK095600 NM_152601 CCDS42504 Q8N972 ZNF709 1179 +HGNC:25352 ZNF710 zinc finger protein 710 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 "DKFZp547K1113|FLJ37393|FLJ00306" Zinc fingers C2H2-type 28 2005-10-30 2014-11-19 374655 ENSG00000140548 OTTHUMG00000149812 uc002bov.3 AK094712 NM_198526 CCDS10358 Q8N1W2 MGI:1921747 RGD:1306491 ZNF710 96 +HGNC:13128 ZNF711 zinc finger protein 711 protein-coding gene gene with protein product Approved Xq21.1 Xq21.1 "CMPX1|ZNF4|ZNF5|dJ75N13.1|Zfp711|MRX97" ZNF6 "zinc finger protein 6 (CMPX1)|zinc finger protein 6" "Zinc fingers C2H2-type|X-linked mental retardation" "28|103" 1989-05-31 2006-06-29 2006-06-29 2015-09-11 7552 ENSG00000147180 OTTHUMG00000021933 uc004eeo.4 BC006349 NM_021998 "CCDS35344|CCDS83481" Q9Y462 19377476 MGI:3045342 RGD:1562768 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZNF711 ZNF711 314990 290194 523 +HGNC:22043 ZNF713 zinc finger protein 713 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 FLJ39963 Zinc fingers C2H2-type 28 2006-01-20 2014-11-19 349075 ENSG00000178665 OTTHUMG00000156175 uc003trc.3 AK097282 NM_182633 CCDS34639 Q8N859 ZNF713 616181 447 +HGNC:27124 ZNF714 zinc finger protein 714 protein-coding gene gene with protein product Approved 19p12 19p12 Zinc fingers C2H2-type 28 2006-01-17 2016-07-26 148206 ENSG00000160352 OTTHUMG00000182833 uc032hqo.2 AK056006 NM_182515 CCDS54239 Q96N38 12477932 ZNF714 618 +HGNC:32458 ZNF716 zinc finger protein 716 protein-coding gene gene with protein product Approved 7p11.2 07p11.2 FLJ46189 Zinc fingers C2H2-type 28 2006-01-17 2016-10-05 441234 ENSG00000182111 OTTHUMG00000156689 uc011kdi.2 AK131575 NM_001159279 CCDS55112 A6NP11 ZNF716 1092 +HGNC:29448 ZNF717 zinc finger protein 717 protein-coding gene gene with protein product Approved 3p12.3 03p12.3 X17 ZNF838 zinc finger protein 838 Zinc fingers C2H2-type 28 2005-11-28 2014-11-19 100131827 ENSG00000227124 OTTHUMG00000158965 uc062lpg.1 AF226994 NM_001128223 "CCDS77774|CCDS77773" Q9BY31 MGI:99183 RGD:1306633 ZNF717 732 +HGNC:26889 ZNF718 zinc finger protein 718 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 FLJ90036 Zinc fingers C2H2-type 28 2006-01-20 2014-11-18 255403 ENSG00000250312 OTTHUMG00000159873 uc032tae.2 AK096662 NM_001039127 "CCDS75078|CCDS75079" Q3SXZ3 556 +HGNC:26987 ZNF720 zinc finger protein 720 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 Zinc fingers C2H2-type 28 2006-01-17 2014-11-19 124411 ENSG00000197302 OTTHUMG00000167515 uc002ecn.5 AK128671 NM_001004300 CCDS45473 Q7Z2F6 ZNF720 550 +HGNC:34505 ZNF720P1 zinc finger protein 720 pseudogene 1 pseudogene pseudogene Approved 16p11.2 16p11.2 2008-08-06 2008-08-06 2014-02-12 342426 ENSG00000260010 OTTHUMG00000176627 NG_008699 PGOHUM00000259049 1128 +HGNC:29425 ZNF721 zinc finger protein 721 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 KIAA1982 Zinc fingers C2H2-type 28 2006-01-17 2013-01-08 170960 ENSG00000182903 OTTHUMG00000112450 uc003gag.5 AK092362 NM_133474 CCDS46991 Q8TF20 11853319 ZNF721 407 +HGNC:22571 ZNF722P zinc finger protein 722, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 ZNF722 zinc finger protein 722 2006-01-20 2012-07-04 2012-07-04 2012-07-04 442695 1095 +HGNC:32286 ZNF723P zinc finger protein 723, pseudogene pseudogene pseudogene Approved 19p12 19p12 ZNF723 zinc finger protein 723 2006-06-30 2014-10-10 2014-10-10 2014-10-10 646864 ENSG00000268696 OTTHUMG00000183120 DQ048837 NG_029131 747 +HGNC:32460 ZNF724 zinc finger protein 724 other unknown Approved 19p12 19p12 ZNF724P "zinc finger protein 724 pseudogene|zinc finger protein 724 (pseudogene)|zinc finger protein 724, pseudogene" 2006-06-30 2016-07-19 2016-07-19 2016-07-19 440519 ENSG00000196081 OTTHUMG00000183231 uc060wjr.1 NR_045525 A8MTY0 748 +HGNC:32461 ZNF725P zinc finger protein 725, pseudogene pseudogene pseudogene Approved 19p12 19p12 ZNF725 zinc finger protein 725 2006-06-30 2012-04-20 2012-04-20 2012-10-16 100128853 ENSG00000268100 OTTHUMG00000183274 NG_011783 PGOHUM00000262388 749 +HGNC:32462 ZNF726 zinc finger protein 726 protein-coding gene gene with protein product Approved 19p12 19p12 Zinc fingers C2H2-type 28 2006-06-30 2014-11-19 730087 ENSG00000213967 OTTHUMG00000167681 uc060wlk.1 "DQ036016|BC046415" XM_001715134 CCDS59372 A6NNF4 MGI:1925501 RGD:7718701 751 +HGNC:13136 ZNF726P1 zinc finger protein 726 pseudogene 1 pseudogene pseudogene Approved 19p13.1 19p13.1 "ZNF67|ZNF67P" "zinc finger protein 67|zinc finger protein 67, pseudogene" 1991-10-08 2011-04-07 2011-04-07 2012-10-05 7618 M88376 NG_008024 Q15940 1505991 PGOHUM00000250601 1056 +HGNC:22785 ZNF727 zinc finger protein 727 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 ZNF727P zinc finger protein 727, pseudogene Zinc fingers C2H2-type 28 2008-06-13 2014-09-09 2014-09-09 2014-11-19 442319 ENSG00000214652 OTTHUMG00000156536 uc011kdm.2 NM_001159522 CCDS55113 A8MUV8 ZNF727 1096 +HGNC:32463 ZNF728 zinc finger protein 728 protein-coding gene gene with protein product Approved 19p12 19p12 Zinc fingers C2H2-type 28 2006-06-30 2014-02-14 388523 ENSG00000269067 OTTHUMG00000183124 uc002nqz.3 BC128130 NM_001267716 CCDS59370 P0DKX0 1166 +HGNC:32464 ZNF729 zinc finger protein 729 protein-coding gene gene with protein product Approved 19p12 19p12 Zinc fingers C2H2-type 28 2006-06-30 2014-11-19 100287226 ENSG00000196350 OTTHUMG00000182938 uc021urs.2 XM_496301 CCDS59368 A6NN14 "MGI:2145180|MGI:3036250|MGI:3040706" ZNF729 746 +HGNC:32470 ZNF730 zinc finger protein 730 protein-coding gene gene with protein product Approved 19p12 19p12 Zinc fingers C2H2-type 28 2008-06-13 2016-07-25 100129543 ENSG00000183850 OTTHUMG00000183227 uc031rkc.2 AK131472 XM_001719792 CCDS59371 Q6ZMV8 ZNF730 622 +HGNC:32471 ZNF731P zinc finger protein 731, pseudogene pseudogene pseudogene Approved 1q44 01q44 ZNF731 zinc finger protein 731 2008-06-13 2012-04-20 2012-04-20 2013-02-15 729806 NG_022762 1120 +HGNC:37138 ZNF732 zinc finger protein 732 protein-coding gene gene with protein product Approved 4p16.3 04p16.3 FLJ59067 Zinc fingers C2H2-type 28 2009-07-22 2009-07-22 2014-02-12 654254 ENSG00000186777 OTTHUMG00000159883 uc062udf.1 AK302099 NM_001137608 CCDS46990 B4DXR9 ZNF732 1017 +HGNC:32473 ZNF733P zinc finger protein 733, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 ZNF733 zinc finger protein 733 2008-06-12 2012-04-20 2012-04-20 2012-04-20 643955 ENSG00000185037 OTTHUMG00000156270 XR_001758298 PGOHUM00000232782 1029 +HGNC:32465 ZNF734P zinc finger protein 734, pseudogene pseudogene pseudogene Approved 7q11.21 07q11.21 ZNF734 zinc finger protein 734 2008-06-12 2012-04-20 2012-04-20 2012-04-20 644017 ENSG00000197990 OTTHUMG00000156384 NG_009437 PGOHUM00000233320 1093 +HGNC:32466 ZNF735 zinc finger protein 735 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 ZNF735P zinc finger protein 735, pseudogene Zinc fingers C2H2-type 28 2007-05-31 2014-09-09 2014-09-09 2014-09-09 730291 ENSG00000223614 OTTHUMG00000156539 uc011kdn.3 NM_001159524 CCDS78236 P0CB33 1097 +HGNC:32467 ZNF736 zinc finger protein 736 protein-coding gene gene with protein product Approved 7q11.21 07q11.21 Zinc fingers C2H2-type 28 2008-06-13 2013-01-08 728927 ENSG00000234444 OTTHUMG00000156537 uc003tsz.5 NM_001170905 CCDS55114 B4DX44 ZNF736 1098 +HGNC:37726 ZNF736P1Y zinc finger protein 736 pseudogene 1, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 ZNF736P1 zinc finger protein 736 pseudogene 1 2010-02-05 2010-06-28 2010-06-28 2014-11-19 442486 ENSG00000223978 OTTHUMG00000045205 NG_004755 PGOHUM00000233856 1046 +HGNC:37727 ZNF736P2Y zinc finger protein 736 pseudogene 2, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 ZNF736P2 zinc finger protein 736 pseudogene 2 2010-02-05 2010-06-28 2010-06-28 2014-11-19 392603 ENSG00000226270 OTTHUMG00000045110 NG_028692 PGOHUM00000234066 +HGNC:37728 ZNF736P3Y zinc finger protein 736 pseudogene 3, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 "ZNF381P|ZNF736P3" "zinc finger protein 381, Y-linked (pseudogene)|zinc finger protein 736 pseudogene 3" 2010-02-05 2010-06-28 2010-06-28 2016-10-05 246123 ENSG00000233126 OTTHUMG00000044062 NG_004755 PGOHUM00000234033 +HGNC:38464 ZNF736P4Y zinc finger protein 736 pseudogene 4, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-06-28 2010-06-28 2014-11-18 100419735 ENSG00000236379 OTTHUMG00000045206 NG_028693 PGOHUM00000234069 +HGNC:38597 ZNF736P5Y zinc finger protein 736 pseudogene 5, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-06-28 2010-06-28 2014-11-19 106480711 ENSG00000230819 OTTHUMG00000045198 NG_043491 PGOHUM00000233858 +HGNC:38440 ZNF736P6Y zinc finger protein 736 pseudogene 6, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-28 2010-06-28 2014-11-19 100419732 ENSG00000224634 OTTHUMG00000041269 NG_024791 PGOHUM00000233912 +HGNC:38404 ZNF736P7Y zinc finger protein 736 pseudogene 7, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-28 2010-06-28 2014-11-19 100419725 ENSG00000241200 OTTHUMG00000041059 NG_024762 1051 +HGNC:38406 ZNF736P8Y zinc finger protein 736 pseudogene 8, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-28 2010-06-28 2014-11-19 100419724 ENSG00000244246 OTTHUMG00000041058 NG_024761 PGOHUM00000233687 +HGNC:38408 ZNF736P9Y zinc finger protein 736 pseudogene 9, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-28 2014-11-19 100419726 ENSG00000239893 OTTHUMG00000041061 NG_024763 PGOHUM00000233689 +HGNC:38410 ZNF736P10Y zinc finger protein 736 pseudogene 10, Y-linked pseudogene pseudogene Approved Yp11.2 Yp11.2 2010-06-28 2014-11-19 100419727 ENSG00000216824 OTTHUMG00000041275 NG_024764 PGOHUM00000233694 +HGNC:38426 ZNF736P11Y zinc finger protein 736 pseudogene 11, Y-linked pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-06-28 2014-11-19 100419730 ENSG00000215537 OTTHUMG00000043857 NG_024779 PGOHUM00000233821 +HGNC:38431 ZNF736P12Y zinc finger protein 736 pseudogene 12, Y-linked pseudogene pseudogene Approved Yq11.23 Yq11.23 2010-06-28 2014-11-19 100419731 ENSG00000232003 OTTHUMG00000045107 NG_024785 PGOHUM00000233853 +HGNC:32468 ZNF737 zinc finger protein 737 protein-coding gene gene with protein product Approved 19p12 19p12 ZNF102 Zinc fingers C2H2-type 28 2007-05-31 2013-01-08 100129842 ENSG00000237440 OTTHUMG00000179732 uc002npa.4 BC015765 NM_145289 CCDS54238 O75373 ZNF737 603984 743 +HGNC:32469 ZNF738 zinc finger protein 738 other unknown Approved 19p12 19p12 2006-08-18 2013-01-16 148203 ENSG00000172687 OTTHUMG00000141298 uc002nps.5 BC034499 NR_027130 Q8NE65 RGD:1594209 ZNF738 744 +HGNC:27465 ZNF740 zinc finger protein 740 protein-coding gene gene with protein product Approved 12q13.13 12q13.13 Zfp740 Zinc fingers C2H2-type 28 2006-01-27 2013-01-08 283337 ENSG00000139651 OTTHUMG00000170027 uc001scb.5 BC053557 NM_001004304 CCDS44896 Q8NDX6 MGI:1915994 RGD:1589052 ZNF740 +HGNC:21948 ZNF746 zinc finger protein 746 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 "FLJ31413|PARIS" parkin interacting substrate Zinc fingers C2H2-type 28 2006-03-20 2015-09-11 155061 ENSG00000181220 OTTHUMG00000158972 uc003wfw.3 AK055975 NM_152557 "CCDS5897|CCDS55180" Q6NUN9 21376232 MGI:1916478 RGD:1306209 ZNF746 613914 469 +HGNC:28350 ZNF747 zinc finger protein 747 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC2474 Zinc fingers C2H2-type 28 2006-03-24 2015-08-26 65988 ENSG00000169955 OTTHUMG00000132401 uc059tfj.1 BC001361 NM_023931 "CCDS10682|CCDS76855|CCDS76856" Q9BV97 10493829 ZNF747 113 +HGNC:32783 ZNF749 zinc finger protein 749 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ16360 Zinc fingers C2H2-type 28 2006-05-10 2014-11-19 388567 ENSG00000186230 OTTHUMG00000150372 uc002qoq.3 AK122740 NM_001023561 CCDS33132 O43361 ZNF749 770 +HGNC:25843 ZNF750 zinc finger protein 750 protein-coding gene gene with protein product Approved 17q25.3 17q25.3 "FLJ13841|Zfp750" 2006-06-07 2014-11-19 79755 ENSG00000141579 OTTHUMG00000177822 uc002kga.4 AK023903 NM_024702 CCDS11819 Q32MQ0 16751772 MGI:2442210 RGD:1590044 ZNF750 610226 173226 +HGNC:23179 ZNF761 zinc finger protein 761 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 "KIAA2033|FLJ16231|FLJ35333" Zinc fingers C2H2-type 28 2006-06-30 2006-08-11 2006-08-11 2015-08-26 388561 ENSG00000160336 OTTHUMG00000156999 uc032icc.1 AB107355 NM_001008401 CCDS77353 Q86XN6 MGI:99198 RGD:1560046 ZNF761 574 +HGNC:27614 ZNF763 zinc finger protein 763 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 ZNF440L Zinc fingers C2H2-type 28 2006-08-14 2006-08-14 2015-08-26 284390 ENSG00000197054 OTTHUMG00000156430 uc002msv.4 AK092240 NM_001012753 CCDS45982 Q0D2J5 ZNF763 737 +HGNC:28200 ZNF764 zinc finger protein 764 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC13138 Zinc fingers C2H2-type 28 2006-08-14 2015-01-12 92595 ENSG00000169951 OTTHUMG00000132406 uc002dyq.4 BC008821 NM_033410 "CCDS10683|CCDS54001" Q96H86 22577170 MGI:2443580 RGD:7540019 ZNF764 114 +HGNC:25092 ZNF765 zinc finger protein 765 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 Zinc fingers C2H2-type 28 2006-08-14 2015-08-26 91661 ENSG00000196417 OTTHUMG00000163079 uc002qbm.4 BC017357 NM_138372 CCDS46171 Q7L2R6 12477932 RGD:7708183 ZNF765 720 +HGNC:28063 ZNF766 zinc finger protein 766 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 Zinc fingers C2H2-type 28 2006-08-14 2016-01-14 90321 ENSG00000196214 OTTHUMG00000182629 uc002pyr.2 AK024074 NM_001010851 CCDS46163 Q5HY98 ZNF766 639 +HGNC:21884 ZNF767P zinc finger family member 767, pseudogene pseudogene pseudogene Approved 7q36.1 07q36.1 FLJ12700 ZNF767 zinc finger family member 767 Zinc fingers C2H2-type 28 2006-08-14 2014-03-20 2014-03-20 2014-11-18 79970 ENSG00000133624 OTTHUMG00000158976 AK022762 NR_027788 Q75MW2 776 +HGNC:26273 ZNF768 zinc finger protein 768 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ23436 Zinc fingers C2H2-type 28 2006-08-14 2014-11-19 79724 ENSG00000169957 OTTHUMG00000132392 uc002dyk.4 BC013760 NM_024671 CCDS10681 Q9H5H4 12477932 MGI:2384582 RGD:7609558 ZNF768 112 +HGNC:26061 ZNF770 zinc finger protein 770 protein-coding gene gene with protein product Approved 15q14 15q14 "FLJ20582|PRO1914" Zinc fingers C2H2-type 28 2006-08-14 2014-11-19 54989 ENSG00000198146 OTTHUMG00000129689 uc001ziw.4 BC071603 NM_014106 CCDS10042 Q6IQ21 MGI:2445100 RGD:1597283 ZNF770 93 +HGNC:29653 ZNF771 zinc finger protein 771 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 DSC43 Zinc fingers C2H2-type 28 2006-08-14 2016-01-14 51333 ENSG00000179965 OTTHUMG00000176985 uc002dyd.4 BC026192 NM_016643 CCDS45460 Q7L3S4 12477932 MGI:2442050 RGD:1305903 ZNF771 111 +HGNC:33106 ZNF772 zinc finger protein 772 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 DKFZp686I1569 Zinc fingers C2H2-type 28 2006-08-14 2016-01-14 400720 ENSG00000197128 OTTHUMG00000168007 uc002qot.3 BX647068 NM_001024596 "CCDS33133|CCDS46210|CCDS82406" Q68DY9 ZNF772 651 +HGNC:30487 ZNF773 zinc finger protein 773 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 MGC4728 ZNF419B zinc finger protein 419B Zinc fingers C2H2-type 28 2006-08-15 2006-12-15 2006-12-15 2015-08-26 374928 ENSG00000152439 OTTHUMG00000183403 uc002qox.4 BC005167 NM_198542 "CCDS33134|CCDS77368|CCDS77369" Q6PK81 12477932 MGI:2385265 RGD:7559893 ZNF773 307 +HGNC:33108 ZNF774 zinc finger protein 774 protein-coding gene gene with protein product Approved 15q26.1 15q26.1 MGC75360 Zinc fingers C2H2-type 28 2006-08-15 2015-08-26 342132 ENSG00000196391 OTTHUMG00000172359 uc002bpk.5 BC067279 NM_001004309 CCDS32330 Q6NX45 ZNF774 549 +HGNC:28501 ZNF775 zinc finger protein 775 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 MGC33584 Zinc fingers C2H2-type 28 2006-08-15 2014-11-19 285971 ENSG00000196456 OTTHUMG00000158324 uc003whf.2 BC038111 NM_173680 CCDS43678 Q96BV0 12477932 MGI:2683557 RGD:1304910 ZNF775 472 +HGNC:26765 ZNF776 zinc finger protein 776 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ38288 Zinc fingers C2H2-type 28 2006-08-15 2014-11-19 284309 ENSG00000152443 OTTHUMG00000156943 uc002qqa.3 AK095607 NM_173632 CCDS12962 Q68DI1 ZNF776 652 +HGNC:22213 ZNF777 zinc finger protein 777 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 KIAA1285 Zinc fingers C2H2-type 28 2006-08-15 2014-11-19 27153 ENSG00000196453 OTTHUMG00000158967 uc003wfv.4 AB033111 NM_015694 CCDS43675 Q9ULD5 MGI:1919556 RGD:1566056 ZNF777 468 +HGNC:26479 ZNF778 zinc finger protein 778 protein-coding gene gene with protein product Approved 16q24.3 16q24.3 FLJ31875 Zinc fingers C2H2-type 28 2006-08-15 2016-10-12 197320 ENSG00000170100 OTTHUMG00000175526 uc002fmv.4 AK056437 NM_182531 "CCDS45550|CCDS73928" Q96MU6 MGI:99173 RGD:1565847 LRG_284|http://www.lrg-sequence.org/LRG/LRG_284 ZNF778 128 +HGNC:27603 ZNF780A zinc finger protein 780A protein-coding gene gene with protein product Approved 19q13.2 19q13.2 ZNF780 Zinc fingers C2H2-type 28 2006-08-15 2006-08-15 2014-11-19 284323 ENSG00000197782 OTTHUMG00000155119 uc002omy.4 AK091274 NM_001010880 "CCDS33026|CCDS46078|CCDS46079" O75290 "MGI:2148237|MGI:3584526" ZNF780A 630 +HGNC:33109 ZNF780B zinc finger protein 780B protein-coding gene gene with protein product Approved 19q13.2 19q13.2 ZNF779 zinc finger protein 779 Zinc fingers C2H2-type 28 2006-08-15 2006-08-15 2006-08-15 2013-01-08 163131 ENSG00000128000 OTTHUMG00000155118 uc060yoj.1 AK127063 NM_001005851 CCDS46077 Q9Y6R6 MGI:2444764 RGD:7588314 ZNF780B 394 +HGNC:26745 ZNF781 zinc finger protein 781 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 FLJ37549 Zinc fingers C2H2-type 28 2006-08-15 2015-07-22 163115 ENSG00000196381 OTTHUMG00000182106 uc002ogy.3 AK097019 NM_152605 CCDS12507 Q8N8C0 ZNF781 237 +HGNC:33110 ZNF782 zinc finger protein 782 protein-coding gene gene with protein product Approved 9q22.33 09q22.33 FLJ16636 Zinc fingers C2H2-type 28 2006-08-16 2014-11-19 158431 ENSG00000196597 OTTHUMG00000020310 uc004awp.2 AK131468 NM_001001662 CCDS35075 Q6ZMW2 ZNF782 461 +HGNC:27222 ZNF783 zinc finger family member 783 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 DKFZp667J212 Zinc fingers C2H2-type 28 2006-08-16 2008-05-28 2013-01-08 100289678 ENSG00000204946 OTTHUMG00000158969 uc011kuo.3 AK131504 NM_001195220 CCDS56519 Q6ZMS7 "8619474|9110174" ZNF783 552 +HGNC:33111 ZNF784 zinc finger protein 784 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 MGC75238 Zinc fingers C2H2-type 28 2006-08-16 2014-11-19 147808 ENSG00000179922 OTTHUMG00000180860 uc002qll.2 AK074859 NM_203374 CCDS12930 Q8NCA9 MGI:3606042 RGD:1565545 ZNF784 288 +HGNC:26496 ZNF785 zinc finger protein 785 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 FLJ32130 Zinc fingers C2H2-type 28 2006-08-16 2015-08-17 146540 ENSG00000197162 OTTHUMG00000176950 uc002dyw.3 BC040642 NM_152458 CCDS10685 A8K8V0 10493829 ZNF785 115 +HGNC:21806 ZNF786 zinc finger protein 786 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 DKFZp762I137 Zinc fingers C2H2-type 28 2006-08-16 2015-09-11 136051 ENSG00000197362 OTTHUMG00000158975 uc003wfh.3 "AK095701|AL834510" NM_152411 CCDS47738 Q8N393 MGI:3026883 RGD:2293500 ZNF786 464 +HGNC:26998 ZNF787 zinc finger protein 787 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 Zinc fingers C2H2-type 28 2006-08-16 2015-07-22 126208 ENSG00000142409 OTTHUMG00000181760 uc032igd.1 "BC077728|AF000560" NM_001002836 CCDS42634 Q6DD87 MGI:1914359 RGD:1310536 ZNF787 361 +HGNC:33112 ZNF788 zinc finger family member 788 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ46419 Zinc fingers C2H2-type 28 2006-08-16 2006-08-16 2014-11-19 388507 ENSG00000214189 OTTHUMG00000156416 uc060txj.1 AI566055 XM_930581 Q6ZQV5 RGD:727944 ZNF788 19 +HGNC:27801 ZNF789 zinc finger protein 789 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 Zinc fingers C2H2-type 28 2006-08-17 2014-11-19 285989 ENSG00000198556 OTTHUMG00000154601 uc003uqq.2 AK093141 NM_213603 "CCDS34693|CCDS34694" Q5FWF6 12477932 ZNF789 530 +HGNC:33114 ZNF790 zinc finger protein 790 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 "MGC62100|FLJ20350" Zinc fingers C2H2-type 28 2006-08-17 2015-08-26 388536 ENSG00000197863 OTTHUMG00000165616 uc021utm.1 BC057245 NM_206894 CCDS12496 Q6PG37 MGI:1923431 RGD:1309815 ZNF790 223 +HGNC:27617 ZNF790-AS1 ZNF790 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 ZNF790 antisense RNA 1 (non-protein coding) 2012-06-23 2012-08-15 2012-10-12 284408 ENSG00000267254 OTTHUMG00000180904 uc002oev.3 NR_040027 +HGNC:26895 ZNF791 zinc finger protein 791 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 FLJ90396 Zinc fingers C2H2-type 28 2006-08-17 2016-10-05 163049 ENSG00000173875 OTTHUMG00000156426 uc002mua.3 AK074877 NM_153358 CCDS12273 Q3KP31 MGI:3648473 RGD:2323544 ZNF791 194 +HGNC:24751 ZNF792 zinc finger protein 792 protein-coding gene gene with protein product Approved 19q13.11 19q13.11 FLJ38451 Zinc fingers C2H2-type 28 2006-08-17 2014-11-19 126375 ENSG00000180884 OTTHUMG00000150339 uc002nxh.1 AK095770 NM_175872 CCDS12440 Q3KQV3 8889548 ZNF792 216 +HGNC:33115 ZNF793 zinc finger protein 793 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 Zinc fingers C2H2-type 28 2006-08-17 2015-07-22 390927 ENSG00000188227 OTTHUMG00000182003 uc010xts.3 AK131417 NM_001013659 CCDS46062 Q6ZN11 ZNF793 629 +HGNC:51303 ZNF793-AS1 ZNF793 antisense RNA 1 (head to head) non-coding RNA RNA, long non-coding Approved 19q13.12 19q13.12 2014-09-26 2014-09-26 101927720 ENSG00000266916 OTTHUMG00000181988 NR_110723 +HGNC:28071 ZNF799 zinc finger protein 799 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 "HIT-40|MGC71805" ZNF842 zinc finger protein 842 Zinc fingers C2H2-type 28 2006-08-21 2014-11-19 90576 ENSG00000196466 OTTHUMG00000156408 uc010dyt.4 BC009517 NM_001080821 "CCDS45989|CCDS82297" Q96GE5 MGI:2443934 RGD:1359692 ZNF799 190 +HGNC:27267 ZNF800 zinc finger protein 800 protein-coding gene gene with protein product Approved 7q31.33 07q31.33 Zinc fingers C2H2-type 28 2006-08-21 2015-09-10 168850 ENSG00000048405 OTTHUMG00000023456 uc064hro.1 AF218032 NM_176814 CCDS5795 Q2TB10 12477932 MGI:1889334 RGD:1560157 ZNF800 +HGNC:21711 ZNF804A zinc finger protein 804A protein-coding gene gene with protein product Approved 2q32.1 02q32.1 C2orf10 2004-11-30 2006-10-27 2006-10-27 2014-11-18 91752 ENSG00000170396 OTTHUMG00000132625 uc002uph.4 AF052145 NM_194250 CCDS2291 Q7Z570 12970790 MGI:2442949 RGD:1305239 ZNF804A 612282 +HGNC:21958 ZNF804B zinc finger protein 804B protein-coding gene gene with protein product Approved 7q21.13 07q21.13 FLJ32110 zinc finger 804B 2006-10-27 2006-12-18 2015-09-10 219578 ENSG00000182348 OTTHUMG00000131037 uc011khi.3 AK056672 NM_181646 CCDS5613 A4D1E1 MGI:2685287 RGD:1589640 ZNF804B +HGNC:23272 ZNF805 zinc finger protein 805 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 Zinc fingers C2H2-type 28 2006-12-15 2013-01-08 390980 ENSG00000204524 OTTHUMG00000183219 uc010ygt.3 AF024708 NM_001023563 "CCDS46207|CCDS46208" Q5CZA5 ZNF805 769 +HGNC:33228 ZNF806 zinc finger protein 806 other unknown Approved 2q21.2 02q21.2 Zinc fingers C2H2-type 28 2006-12-21 2015-05-20 646915 ENSG00000018607 OTTHUMG00000153932 XM_497879 P0C7X5 PGOHUM00000240959 1067 +HGNC:33229 ZNF807 zinc finger protein 807 other unknown Approved 19q13.11 19q13.11 ZNF181P1 ZNF807P zinc finger protein 807, pseudogene Zinc fingers C2H2-type 28 2006-12-21 2011-02-17 2011-02-17 2014-08-13 100129800 ENSG00000248830 OTTHUMG00000158178 NG_011972 1007 +HGNC:33230 ZNF808 zinc finger protein 808 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 Zinc fingers C2H2-type 28 2006-12-21 2014-11-19 388558 ENSG00000198482 OTTHUMG00000158230 uc010epq.2 CR749856 NM_001039886 CCDS46167 Q8N4W9 RGD:7701959 ZNF808 713 +HGNC:33242 ZNF812P zinc finger protein 812, pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 ZNF812 zinc finger protein 812 Zinc fingers C2H2-type 28 2007-01-05 2015-11-03 2015-11-03 2015-11-03 729648 ENSG00000224689 OTTHUMG00000167867 uc060tbh.1 XR_001753863 RGD:1308643 733 +HGNC:33257 ZNF813 zinc finger protein 813 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 FLJ16542 Zinc fingers C2H2-type 28 2007-01-18 2016-10-05 126017 ENSG00000198346 OTTHUMG00000158309 uc002qbu.3 AK091460 NM_001004301 CCDS46172 Q6ZN06 ZNF813 551 +HGNC:33258 ZNF814 zinc finger protein 814 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 Zinc fingers C2H2-type 28 2007-01-18 2013-01-08 730051 ENSG00000204514 OTTHUMG00000183519 uc061dny.1 XM_001725708 CCDS46212 B7Z6K7 RGD:7541917 ZNF814 772 +HGNC:22029 ZNF815P zinc finger protein 815, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 FLJ38969 ZNF815 zinc finger protein 815 2007-01-18 2012-04-20 2012-04-20 2016-08-17 401303 ENSG00000235944 OTTHUMG00000155501 AK096288 NR_023382 A8K554 PGOHUM00000302512 1087 +HGNC:26995 ZNF816 zinc finger protein 816 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 ZNF816A zinc finger protein 816A Zinc fingers C2H2-type 28 2007-01-18 2010-07-23 2010-07-23 2015-07-22 125893 ENSG00000180257 OTTHUMG00000167761 uc002qal.3 BC063805 NM_001031665 CCDS33096 Q0VGE8 RGD:1597345 ZNF816 1198 +HGNC:38879 ZNF816-ZNF321P ZNF816-ZNF321P readthrough other readthrough Approved 19q13.41 19q13.41 ZNF816-ZNF321 ZNF816-ZNF321 readthrough 2010-09-15 2011-04-19 2011-04-19 2015-08-25 100529240 ENSG00000221874 OTTHUMG00000167759 uc010eqj.4 AK316503 NM_001202473 CCDS56101 +HGNC:33265 ZNF818P zinc finger protein 818, pseudogene pseudogene pseudogene Approved 19q13.41 19q13.41 FLJ46385 ZNF818 "zinc finger protein 818|zinc finger protein 818 pseudogene|zinc finger protein 818 (pseudogene)" 2007-01-19 2008-07-03 2010-08-03 2010-08-03 390963 AK128250 XR_040819 Q6ZRF7 342 +HGNC:28043 ZNF821 zinc finger protein 821 protein-coding gene gene with protein product Approved 16q22.2 16q22.2 Zinc fingers C2H2-type 28 2007-11-20 2015-07-22 55565 ENSG00000102984 OTTHUMG00000176874 uc021tlb.1 AF070588 NM_017530 "CCDS32481|CCDS56006|CCDS73911" O75541 "8619474|9110174" MGI:1923121 RGD:1306674 ZNF821 +HGNC:30936 ZNF823 zinc finger protein 823 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 HSZFP36 ZFP 36 for a zinc finger protein Zinc fingers C2H2-type 28 2008-01-18 2013-01-08 55552 ENSG00000197933 OTTHUMG00000156528 uc002msm.3 X51760 NM_001080493 CCDS45981 P16415 RGD:7531244 ZNF823 607 +HGNC:33875 ZNF826P zinc finger protein 826, pseudogene pseudogene pseudogene Approved 19p12 19p12 FLJ44894 ZNF826 zinc finger protein 826 2008-02-01 2010-08-03 2010-08-03 2014-11-19 664701 ENSG00000231205 OTTHUMG00000162773 BC016785 NM_001039884 Q6ZT77 ZNF826P 616 +HGNC:27193 ZNF827 zinc finger protein 827 protein-coding gene gene with protein product Approved 4q31.21-q31.22 04q31.21-q31.22 Zinc fingers C2H2-type 28 2008-03-25 2016-10-11 152485 ENSG00000151612 OTTHUMG00000161362 uc003ikm.4 AK091130 NM_178835 "CCDS34072|CCDS77968" Q17R98 25150861 MGI:2444807 RGD:1560620 ZNF827 +HGNC:34032 ZNF829 zinc finger protein 829 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 DKFZp779O175 Zinc fingers C2H2-type 28 2008-03-25 2014-11-19 374899 ENSG00000185869 OTTHUMG00000048161 uc002ofa.3 BC107131 NM_001037232 "CCDS42557|CCDS59380" Q3KNS6 ZNF829 625 +HGNC:28291 ZNF830 zinc finger protein 830 protein-coding gene gene with protein product Approved 17q12 17q12 "MGC20398|OMCG1" orphan maintenance of genome 1 CCDC16 coiled-coil domain containing 16 2005-04-03 2008-03-25 2008-03-25 2014-11-19 91603 ENSG00000198783 OTTHUMG00000179771 uc002hih.5 AK055707 NM_052857 CCDS32618 Q96NB3 23066043 MGI:1914233 RGD:1562573 ZNF830 +HGNC:16167 ZNF831 zinc finger protein 831 protein-coding gene gene with protein product Approved 20q13.32 20q13.32 dJ492J12.1 C20orf174 chromosome 20 open reading frame 174 2001-07-17 2008-03-25 2008-03-25 2015-08-26 128611 ENSG00000124203 OTTHUMG00000032864 uc002yan.4 AL121919 NM_178457 CCDS42894 Q5JPB2 MGI:3641861 RGD:1565819 ZNF831 +HGNC:33819 ZNF833P zinc finger protein 833, pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 ZNF833 zinc finger protein 833 2008-06-12 2010-08-03 2010-08-03 2015-08-17 401898 ENSG00000267343 OTTHUMG00000182038 BC137336 NM_001013691 Q6ZTB9 ZNF833P 606 +HGNC:34332 ZNF835 zinc finger protein 835 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 BC37295_3 Zinc fingers C2H2-type 28 2008-06-12 2013-01-08 90485 ENSG00000127903 OTTHUMG00000182158 uc010ygn.3 AK023017 NM_001005850 CCDS56105 Q9Y2P0 ZNF835 3 +HGNC:34333 ZNF836 zinc finger protein 836 protein-coding gene gene with protein product Approved 19q13.33 19q13.33 FLJ16287 Zinc fingers C2H2-type 28 2008-06-12 2013-01-08 162962 ENSG00000196267 OTTHUMG00000182567 uc010ydi.3 BC011784 NM_001102657 CCDS46162 Q6ZNA1 ZNF836 638 +HGNC:25164 ZNF837 zinc finger protein 837 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 Zinc fingers C2H2-type 28 2008-06-12 2013-01-08 116412 ENSG00000152475 OTTHUMG00000183517 uc002qsl.5 BC012365 NM_138466 CCDS46216 Q96EG3 12477932 ZNF837 654 +HGNC:20345 ZNF839 zinc finger protein 839 protein-coding gene gene with protein product Approved 14q32.31 14q32.31 C14orf131 chromosome 14 open reading frame 131 2003-01-28 2008-06-23 2008-06-23 2016-10-05 55778 ENSG00000022976 OTTHUMG00000171864 uc010awk.3 AK093342 NM_018335 "CCDS45164|CCDS58336" A8K0R7 MGI:1920055 RGD:1562557 ZNF839 +HGNC:38455 ZNF839P1 zinc finger protein 839 pseudogene 1 pseudogene pseudogene Approved Yq11.222 Yq11.222 2010-05-06 2014-11-19 100419733 ENSG00000217896 OTTHUMG00000036499 NG_021945 PGOHUM00000262160 +HGNC:34344 ZNF840P zinc finger protein 840, pseudogene pseudogene pseudogene Approved 20q13.12 20q13.12 dJ981L23.3 "C20orf157|ZNF840" "chromosome 20 open reading frame 157|zinc finger protein 840" 2008-06-23 2014-10-10 2014-10-10 2015-08-06 100533646 ENSG00000184617 OTTHUMG00000032647 NG_028901 A6NDX5 PGOHUM00000297130 1069 +HGNC:27611 ZNF841 zinc finger protein 841 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 LOC284371 Zinc fingers C2H2-type 28 2008-06-23 2015-08-27 284371 ENSG00000197608 OTTHUMG00000182558 uc061cbg.1 AK131409 XM_209155 "CCDS46161|CCDS82388" Q6ZN19 ZNF841 637 +HGNC:28710 ZNF843 zinc finger protein 843 protein-coding gene gene with protein product Approved 16p11.2 16p11.2 MGC46336 Zinc fingers C2H2-type 28 2008-07-04 2013-01-11 283933 ENSG00000176723 OTTHUMG00000176616 uc059tnf.1 BC036762 NM_001136509 CCDS45471 Q8N446 12477932 ZNF843 595 +HGNC:25932 ZNF844 zinc finger protein 844 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 FLJ14959 Zinc fingers C2H2-type 28 2008-07-04 2015-08-27 284391 ENSG00000223547 OTTHUMG00000156405 uc002mtb.3 AL832297 XM_017026664 CCDS45985 Q08AG5 RGD:1642422 ZNF844 609 +HGNC:25112 ZNF845 zinc finger protein 845 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 Zinc fingers C2H2-type 28 2008-07-04 2015-08-27 91664 ENSG00000213799 OTTHUMG00000182920 uc010ydv.1 BC007307 XM_039908 CCDS46170 Q96IR2 "MGI:5588897|MGI:5588905|MGI:5590685" RGD:7716527 ZNF845 648 +HGNC:27260 ZNF846 zinc finger protein 846 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Zinc fingers C2H2-type 28 2008-07-04 2014-11-19 162993 ENSG00000196605 OTTHUMG00000180208 uc002mmb.2 AK097652 NM_001077624 CCDS42496 Q147U1 MGI:1924012 RGD:1564241 ZNF846 734 +HGNC:34384 ZNF847P zinc finger protein 847, pseudogene pseudogene pseudogene Approved 1q42.13 01q42.13 gm127 "zinc finger protein 847 pseudogene|zinc finger protein 847 (pseudogene)" 2008-07-04 2010-08-03 2010-08-03 401983 ENSG00000215812 OTTHUMG00000037696 NR_036753 585 +HGNC:34387 ZNF848P zinc finger protein 848, pseudogene pseudogene pseudogene Approved 17q24.1 17q24.1 "zinc finger protein 848 pseudogene|zinc finger protein 848 (pseudogene)" 2008-07-04 2010-08-03 2010-08-03 100380945 NG_016731 600 +HGNC:34389 ZNF849P zinc finger protein 849, pseudogene pseudogene pseudogene Approved 19p12 19p12 "zinc finger protein 849 pseudogene|zinc finger protein 849 (pseudogene)" 2008-07-04 2010-08-03 2015-11-03 100130108 ENSG00000198153 OTTHUMG00000182989 XM_001719785 PGOHUM00000295302 621 +HGNC:27994 ZNF850 zinc finger protein 850 protein-coding gene gene with protein product Approved 19q13.12 19q13.12 ZNF850P "zinc finger protein 850 pseudogene|zinc finger protein 850 (pseudogene)" Zinc fingers C2H2-type 28 2008-07-04 2010-08-02 2010-08-02 2015-07-22 342892 ENSG00000267041 OTTHUMG00000180899 uc010efc.4 BC052603 NM_001193552 "CCDS59379|CCDS74350" A8MQ14 12477932 ZNF850 624 +HGNC:27713 ZNF852 zinc finger protein 852 protein-coding gene gene with protein product Approved 3p21.31 03p21.31 Zinc fingers C2H2-type 28 2008-07-04 2016-10-05 285346 ENSG00000178917 OTTHUMG00000156453 uc062iuy.1 BC014381 XM_001717402 Q6ZMS4 ZNF852 657 +HGNC:21767 ZNF853 zinc finger protein 853 protein-coding gene gene with protein product Approved 7p22.1 07p22.1 DKFZp434J1015 Zinc fingers C2H2-type 28 2008-07-04 2015-08-26 54753 ENSG00000236609 OTTHUMG00000151853 uc011jwz.3 AL133055 NM_017560 CCDS59048 P0CG23 MGI:2685638 RGD:1563095 ZNF853 669 +HGNC:34507 ZNF859P zinc finger protein 859, pseudogene pseudogene pseudogene Approved 1p33 01p33 "zinc finger protein 859 pseudogene|zinc finger protein 859 (pseudogene)" 2008-08-06 2010-08-03 2014-11-19 100507490 ENSG00000215887 OTTHUMG00000008273 NG_028931 PGOHUM00000256878 1054 +HGNC:34513 ZNF860 zinc finger protein 860 protein-coding gene gene with protein product Approved 3p24.1 03p24.1 Zinc fingers C2H2-type 28 2008-08-11 2014-11-19 344787 ENSG00000197385 OTTHUMG00000155838 uc011axg.3 AK294003 XM_017006299 CCDS46784 A6NHJ4 ZNF860 1071 +HGNC:34514 ZNF861P zinc finger protein 861, pseudogene pseudogene pseudogene Approved 19p13.12 19p13.12 "zinc finger protein 861 pseudogene|zinc finger protein 861 (pseudogene)" 2008-08-11 2010-08-03 2012-10-03 100302737 ENSG00000267235 OTTHUMG00000182286 NG_023047 O60384 PGOHUM00000259304 1009 +HGNC:34519 ZNF862 zinc finger protein 862 protein-coding gene gene with protein product Approved 7q36.1 07q36.1 Zinc fingers C2H2-type 28 2008-08-15 2014-11-19 643641 ENSG00000106479 OTTHUMG00000158093 uc010lpn.4 AB011115 NM_001099220 CCDS47741 O60290 RGD:1598054 ZNF862 1153 +HGNC:35156 ZNF863P zinc finger protein 863, pseudogene pseudogene pseudogene Approved 2p16.3 02p16.3 "zinc finger protein 863, pseudogene|zinc finger protein 863 (pseudogene)" 2008-09-26 2010-08-03 2014-11-19 100419682 ENSG00000236538 OTTHUMG00000151841 NG_023689 1064 +HGNC:38705 ZNF865 zinc finger protein 865 protein-coding gene gene with protein product Approved 19q13.42 19q13.42 Zinc fingers C2H2-type 28 2010-07-29 2015-08-27 100507290 ENSG00000261221 OTTHUMG00000177108 uc061dbu.1 NM_001195605 CCDS58681 P0CJ78 MGI:2442656 RGD:6494165 764 +HGNC:32472 ZNF876P zinc finger protein 876, pseudogene pseudogene pseudogene Approved 4p16.3 04p16.3 2008-06-12 2009-07-22 2010-08-03 2014-11-19 642280 ENSG00000198155 OTTHUMG00000159874 BC028359 NR_027481 Q49A33 PGOHUM00000250744 1073 +HGNC:38697 ZNF877P zinc finger protein 877, pseudogene pseudogene pseudogene Approved 20p11.23 20p11.23 2010-07-29 2014-11-19 100873811 ENSG00000226875 OTTHUMG00000032019 NG_032730 PGOHUM00000247609 1236 +HGNC:37246 ZNF878 zinc finger protein 878 protein-coding gene gene with protein product Approved 19p13.2 19p13.2 Zinc fingers C2H2-type 28 2009-09-23 2016-04-25 729747 ENSG00000257446 OTTHUMG00000169370 uc021upl.2 NM_001080404 CCDS45984 C9JN71 MGI:2684459 ZNF878 738 +HGNC:37273 ZNF879 zinc finger protein 879 protein-coding gene gene with protein product Approved 5q35.3 05q35.3 DKFZp686E2433 Zinc fingers C2H2-type 28 2009-09-25 2014-11-19 345462 ENSG00000234284 OTTHUMG00000163596 uc003mjt.5 AK300504 NM_001136116 CCDS47352 B4DU55 MGI:3053099 RGD:1563273 ZNF879 1080 +HGNC:37249 ZNF880 zinc finger protein 880 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 Zinc fingers C2H2-type 28 2009-09-28 2013-01-08 400713 ENSG00000221923 OTTHUMG00000167972 uc002pzc.4 BC058819 NM_001145434 CCDS46164 Q6PDB4 ZNF880 759 +HGNC:27271 ZNF883 zinc finger protein 883 protein-coding gene gene with protein product Approved 9q32 09q32 Zinc fingers C2H2-type 28 2010-03-17 2014-11-19 169834 ENSG00000228623 OTTHUMG00000020514 uc064vda.1 AK095843 NM_001101338 CCDS83401 P0CG24 RGD:2322991 1036 +HGNC:38421 ZNF884P zinc finger protein 884, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-05-06 2015-11-03 100419729 NG_021920 PGOHUM00000305525 852 +HGNC:38456 ZNF885P zinc finger protein 885, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-05-06 2014-11-19 100419734 ENSG00000228764 OTTHUMG00000036665 NG_021946 PGOHUM00000234005 +HGNC:38420 ZNF886P zinc finger protein 886, pseudogene pseudogene pseudogene Approved Yq11.223 Yq11.223 2010-05-06 2014-11-19 100419728 ENSG00000232522 OTTHUMG00000036506 NG_021919 PGOHUM00000233787 853 +HGNC:38700 ZNF887P zinc finger protein 887, pseudogene pseudogene pseudogene Approved 19p13.2 19p13.2 ZNF887 zinc finger protein 887 2010-07-23 2012-04-20 2012-04-20 2015-08-17 100419709 ENSG00000267500 OTTHUMG00000156530 NG_024217 PGOHUM00000295196 735 +HGNC:38695 ZNF888 zinc finger protein 888 protein-coding gene gene with protein product Approved 19q13.41 19q13.41 Zinc fingers C2H2-type 28 2010-07-23 2014-11-19 388559 ENSG00000213793 uc061cgs.1 XM_496322 P0CJ79 1200 +HGNC:38691 ZNF890P zinc finger protein 890, pseudogene pseudogene pseudogene Approved 7p22.1 07p22.1 2010-07-29 2016-08-17 645700 ENSG00000159904 OTTHUMG00000166790 NR_034163 PGOHUM00000302029 1033 +HGNC:38709 ZNF891 zinc finger protein 891 protein-coding gene gene with protein product Approved 12q24.33 12q24.33 Zinc fingers C2H2-type 28 2010-07-29 2016-09-26 101060200 ENSG00000214029 OTTHUMG00000167943 uc031qkm.2 XM_017018666 CCDS59238 A8MT65 RGD:1583951 ZNF891 973 +HGNC:39250 ZNF962P zinc finger protein 962, pseudogene pseudogene pseudogene Approved 13q11 13q11 2010-11-24 2014-11-19 729501 ENSG00000215604 OTTHUMG00000016450 NG_023215 +HGNC:42025 ZNF965P zinc finger protein 965, pseudogene pseudogene pseudogene Approved 13q11 13q11 2011-06-01 2011-06-01 100132598 ENSG00000227784 OTTHUMG00000016464 NG_021967 PGOHUM00000248503 +HGNC:44091 ZNF968P zinc finger protein 968, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 2012-06-22 2015-10-30 100419756 NG_025794 PGOHUM00000301289 +HGNC:44211 ZNF969P zinc finger protein 969, pseudogene pseudogene pseudogene Approved 4q25 04q25 2012-07-09 2015-05-18 100130995 ENSG00000251046 OTTHUMG00000161373 NG_028847 PGOHUM00000300322 1076 +HGNC:44511 ZNF970P zinc finger protein 970, pseudogene pseudogene pseudogene Approved 12q11 12q11 2015-05-20 2015-05-20 105369729 ENSG00000258368 OTTHUMG00000169295 NG_042161 PGOHUM00000291622 941 +HGNC:51848 ZNF971P zinc finger protein 971, pseudogene pseudogene pseudogene Approved 16p11.1 16p11.1 2015-08-26 2015-08-26 2015-08-26 100419895 ENSG00000214581 OTTHUMG00000176003 NG_026366 PGOHUM00000293581 1127 +HGNC:13181 ZNFP1 entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:29271 ZNFX1 zinc finger NFX1-type containing 1 protein-coding gene gene with protein product Approved 20q13.13 20q13.13 "KIAA1404|FLJ11277" zinc finger, NFX1-type containing 1 UPF1 like RNA helicases 1169 2006-02-17 2016-04-12 2016-04-12 57169 ENSG00000124201 OTTHUMG00000032696 uc002xui.5 AK022641 NM_021035 CCDS13417 Q9P2E3 10718198 MGI:2138982 RGD:1306344 ZNFX1 +HGNC:21688 ZNHIT1 zinc finger HIT-type containing 1 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "CG1I|H_DJ0747G18.14" putative cyclin G1 interacting protein ZNFN4A1 "zinc finger protein, subfamily 4A (HIT domain containing), member 1|zinc finger, HIT domain containing 1" "Zinc fingers HIT-type| SRCAP complex" "83|1329" 2003-07-14 2003-08-08 2016-02-12 2016-02-12 10467 ENSG00000106400 OTTHUMG00000157113 uc003uye.4 AF093571 NM_006349 CCDS5716 O43257 MGI:1917353 RGD:2322870 ZNHIT1 +HGNC:44474 ZNHIT1P1 zinc finger HIT-type containing 1 pseudogene 1 pseudogene pseudogene Approved 8q24.3 08q24.3 2012-11-02 2016-02-12 2016-02-12 100288248 ENSG00000253421 OTTHUMG00000164657 NG_030258 PGOHUM00000249811 +HGNC:1177 ZNHIT2 zinc finger HIT-type containing 2 protein-coding gene gene with protein product Approved 11q13.1 11q13.1 FON C11orf5 "chromosome 11 open reading frame 5|zinc finger, HIT domain containing 2" Zinc fingers HIT-type 83 1998-08-06 2004-07-14 2016-02-12 2016-10-05 741 ENSG00000174276 OTTHUMG00000165604 uc001ocw.4 NM_014205 CCDS8094 Q9UHR6 MGI:1352481 RGD:1307918 ZNHIT2 604575 +HGNC:12309 ZNHIT3 zinc finger HIT-type containing 3 protein-coding gene gene with protein product Approved 17q12 17q12 TRIP3 "thyroid hormone receptor interactor 3|zinc finger, HIT type 3" Zinc fingers HIT-type 83 1999-03-19 2005-09-08 2016-02-12 2016-10-05 9326 ENSG00000273611 OTTHUMG00000188436 uc002hms.3 L40410 NM_004773 "CCDS11312|CCDS62156" Q15649 7776974 MGI:3051596 RGD:1598226 ZNHIT3 604500 +HGNC:26089 ZNHIT6 zinc finger HIT-type containing 6 protein-coding gene gene with protein product Approved 1p22.3 01p22.3 "FLJ20729|NY-BR-75|BCD1" box C/D snoRNA essential 1 homolog (S. cerevisiae) C1orf181 "chromosome 1 open reading frame 181|zinc finger, HIT type 6" Zinc fingers HIT-type 83 2005-07-28 2008-06-23 2016-02-12 2016-02-12 54680 ENSG00000117174 OTTHUMG00000010576 uc001dlh.4 AL442074 NM_017953 "CCDS707|CCDS53338" Q9NWK9 12747765 MGI:1916996 RGD:1308723 ZNHIT6 +HGNC:13182 ZNRD1 zinc ribbon domain containing 1 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "hZR14|HTEX-6|tctex-6|RPA12" zinc ribbon domain containing, 1 2000-04-13 2006-04-04 2016-10-05 30834 ENSG00000066379 OTTHUMG00000031149 uc003npa.5 AF024617 NM_170783 CCDS4670 Q9P1U0 "8938444|10662553" MGI:1913386 RGD:1303114 ZNRD1 607525 +HGNC:13924 ZNRD1ASP zinc ribbon domain containing 1 antisense, pseudogene pseudogene pseudogene Approved 6p22.1 06p22.1 "HTEX4|Em:AB023056.3" "C6orf12|NCRNA00171|ZNRD1AS|ZNRD1-AS|ZNRD1-AS1" "chromosome 6 open reading frame 12|non-protein coding RNA 171|ZNRD1 antisense RNA (non-protein coding)|ZNRD1 antisense RNA 1 (non-protein coding)|ZNRD1 antisense RNA 1" 2002-11-18 2016-02-22 2016-02-22 2016-10-11 80862 ENSG00000204623 OTTHUMG00000191729 uc011dme.2 AF032110 NR_026751 "9553157|11130983|25110835" MGI:1923666 RGD:1590246 615714 +HGNC:18452 ZNRF1 zinc and ring finger 1 protein-coding gene gene with protein product Approved 16q23.1 16q23.1 "nin283|FLJ14846|DKFZp434E229" zinc and ring finger 1, E3 ubiquitin protein ligase Ring finger proteins 58 2004-07-02 2016-07-28 2016-10-05 84937 ENSG00000186187 OTTHUMG00000137606 uc002fdl.2 AF378524 XM_017023793 CCDS10912 Q8ND25 MGI:2177308 RGD:1592195 ZNRF1 612060 6.3.2.- +HGNC:22316 ZNRF2 zinc and ring finger 2 protein-coding gene gene with protein product Approved 7p14.3 07p14.3 RNF202 zinc and ring finger 2, E3 ubiquitin protein ligase Ring finger proteins 58 2004-07-29 2016-07-28 2016-10-05 223082 ENSG00000180233 OTTHUMG00000097759 uc003tat.3 AF513707 NM_147128 CCDS5426 Q8NHG8 22797923 MGI:1196246 RGD:1306645 ZNRF2 612061 6.3.2.- +HGNC:42792 ZNRF2P1 zinc and ring finger 2 pseudogene 1 pseudogene pseudogene Approved 7p14.3 07p14.3 2011-08-18 2014-11-18 441208 ENSG00000237004 OTTHUMG00000152982 NR_003502 +HGNC:42793 ZNRF2P2 zinc and ring finger 2 pseudogene 2 pseudogene pseudogene Approved 7p14.3 07p14.3 2011-08-22 2015-02-02 100271874 ENSG00000225264 OTTHUMG00000152750 NR_027347 PGOHUM00000232633 +HGNC:45113 ZNRF2P3 zinc and ring finger 2 pseudogene 3 pseudogene pseudogene Approved 10q22.3 10q22.3 2013-02-15 2013-02-15 100130879 ENSG00000235924 OTTHUMG00000018593 NG_011590 +HGNC:18126 ZNRF3 zinc and ring finger 3 protein-coding gene gene with protein product Approved 22q12.1 22q12.1 "KIAA1133|BK747E2.3|FLJ22057|RNF203" Ring finger proteins 58 2004-07-29 2016-07-28 84133 ENSG00000183579 OTTHUMG00000151009 uc021wnq.2 AB051436 XM_290972 "CCDS42999|CCDS56225" Q9ULT6 10574461 MGI:3039616 RGD:1593771 ZNRF3 612062 6.3.2.- +HGNC:41927 ZNRF3-AS1 ZNRF3 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 22q12.1 22q12.1 ZNRF3 antisense RNA 1 (non-protein coding) 2011-05-19 2012-08-15 2014-11-19 100874123 ENSG00000177993 OTTHUMG00000153511 uc031rxk.1 NR_046851 +HGNC:41440 ZNRF3-IT1 ZNRF3 intronic transcript 1 non-coding RNA RNA, long non-coding Approved 22q12.1 22q12.1 ZNRF3 intronic transcript 1 (non-protein coding) 2011-05-19 2015-02-25 2015-02-25 100874339 ENSG00000235786 OTTHUMG00000151010 uc062cvv.1 +HGNC:17726 ZNRF4 zinc and ring finger 4 protein-coding gene gene with protein product Approved 19p13.3 19p13.3 "spzn|Ssrzf1|RNF204" "sperizin|nixin" Ring finger proteins 58 2004-07-29 2016-07-28 148066 ENSG00000105428 OTTHUMG00000180356 uc002mca.5 AK098722 NM_181710 CCDS42475 Q8WWF5 "10191088|21205830" MGI:1341258 RGD:1563631 ZNRF4 612063 6.3.2.- +HGNC:13187 ZP1 zona pellucida glycoprotein 1 protein-coding gene gene with protein product Approved 11q12.2 11q12.2 zona pellucida glycoprotein 1 (sperm receptor) Zona pellucida glycoproteins 8 1999-12-10 2015-11-20 2015-11-20 22917 ENSG00000149506 OTTHUMG00000167797 uc001nqd.4 BC067899 NM_207341 CCDS31572 P60852 10542331 MGI:103073 RGD:620604 ZP1 195000 406889 +HGNC:13188 ZP2 zona pellucida glycoprotein 2 protein-coding gene gene with protein product Approved 16p12.3-p12.2 16p12.3-p12.2 ZPA zona pellucida glycoprotein 2 (sperm receptor) Zona pellucida glycoproteins 8 1997-07-01 2016-03-29 2016-10-11 7783 ENSG00000103310 OTTHUMG00000090681 uc002dii.3 M90366 XM_011545942 "CCDS10596|CCDS73843" Q05996 8385033 MGI:99214 RGD:620605 ZP2 182888 +HGNC:13189 ZP3 zona pellucida glycoprotein 3 protein-coding gene gene with protein product Approved 7q11.23 07q11.23 "ZP3-424|ZP3-372|ZPC" "ZP3A|ZP3B" zona pellucida glycoprotein 3A (sperm receptor) Zona pellucida glycoproteins 8 1991-07-31 2002-09-20 2016-07-28 2016-07-28 7784 ENSG00000188372 OTTHUMG00000130575 uc003ufc.5 M60504 XM_017012586 "CCDS5586|CCDS47618" P21754 1478648 MGI:99215 RGD:620606 ZP3 182889 +HGNC:15770 ZP4 zona pellucida glycoprotein 4 protein-coding gene gene with protein product Approved 1q43 01q43 ZPB Zona pellucida glycoproteins 8 2001-07-04 2015-09-14 57829 ENSG00000116996 OTTHUMG00000039586 uc001hym.3 U05781 NM_021186 CCDS1615 Q12836 7841460 RGD:628708 ZP4 613514 +HGNC:51635 ZPAXP zona pellucida glycoprotein AX, pseudogene pseudogene pseudogene Approved 2p24.2 02p24.2 2015-03-31 2015-03-31 105373450 XR_939764 "15570621|18046012" +HGNC:15662 ZPBP zona pellucida binding protein protein-coding gene gene with protein product Approved 7p12.2 07p12.2 "SP38|ZPBP1" Immunoglobulin like domain containing 594 2001-05-02 2016-10-05 11055 ENSG00000042813 OTTHUMG00000023528 uc003tou.4 D17570 NM_007009 "CCDS5509|CCDS55110" Q9BS86 9378618 MGI:1855701 RGD:1563985 ZPBP 608498 +HGNC:20678 ZPBP2 zona pellucida binding protein 2 protein-coding gene gene with protein product Approved 17q21.1 17q21.1 "ZPBPL|MGC41930" Immunoglobulin like domain containing 594 2004-04-30 2015-08-24 124626 ENSG00000186075 OTTHUMG00000133022 uc002hte.4 BC043152 NM_198844 "CCDS11352|CCDS11353" Q6X784 12883658 MGI:1916626 RGD:1549726 ZPBP2 608499 +HGNC:27022 ZPLD1 zona pellucida like domain containing 1 protein-coding gene gene with protein product Approved 3q12.3 03q12.3 2006-01-06 2016-07-05 2016-07-05 131368 ENSG00000170044 OTTHUMG00000159229 uc003dvs.2 AY090780 NM_175056 CCDS2947 Q8TCW7 18632209 MGI:2443415 RGD:1308138 ZPLD1 615915 +HGNC:13051 ZPR1 ZPR1 zinc finger protein-coding gene gene with protein product Approved 11q23.3 11q23.3 ZNF259 zinc finger protein 259 Zinc fingers 26 1999-02-15 2014-02-20 2014-02-20 2014-11-18 8882 ENSG00000109917 OTTHUMG00000046114 AF019767 NM_003904 CCDS8375 O75312 "8650580|9763455|22422766" MGI:1330262 RGD:1562173 603901 +HGNC:18224 ZRANB1 zinc finger RANBP2-type containing 1 protein-coding gene gene with protein product Approved 10q26.13 10q26.13 TRABID zinc finger, RAN-binding domain containing 1 "Zinc fingers RANBP2-type |OTU domain containing" "89|669" 2003-05-12 2016-02-12 2016-10-05 54764 ENSG00000019995 OTTHUMG00000019223 uc001lic.4 AJ252060 NM_017580 CCDS7642 Q9UGI0 11463333 MGI:106441 RGD:2321751 ZRANB1 611749 C64.004 +HGNC:13058 ZRANB2 zinc finger RANBP2-type containing 2 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "ZIS|ZIS1|ZIS2" ZNF265 "zinc finger protein 265|zinc finger, RAN-binding domain containing 2" Zinc fingers RANBP2-type 89 1999-07-19 2006-06-28 2016-02-12 2016-10-05 9406 ENSG00000132485 OTTHUMG00000009660 uc001dft.4 AF065391 NM_203350 "CCDS659|CCDS660" O95218 9931435 MGI:1858211 RGD:61854 ZRANB2 604347 +HGNC:43594 ZRANB2-AS1 ZRANB2 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 ZRANB2 antisense RNA 1 (non-protein coding) 2011-11-22 2012-08-15 2012-10-12 100132618 ENSG00000235079 OTTHUMG00000009659 uc057hmu.1 BC070115 NR_038420 +HGNC:43595 ZRANB2-AS2 ZRANB2 antisense RNA 2 (head to head) non-coding RNA RNA, long non-coding Approved 1p31.1 01p31.1 "ZRANB2 antisense RNA 2 (non-protein coding)|ZRANB2 antisense RNA 2" 2011-11-22 2012-10-03 2012-10-12 100852410 ENSG00000229956 OTTHUMG00000009733 uc057hnc.1 BC054887 NR_046217 +HGNC:25249 ZRANB3 zinc finger RANBP2-type containing 3 protein-coding gene gene with protein product Approved 2q21.3 02q21.3 DKFZP434B1727 zinc finger, RAN-binding domain containing 3 Zinc fingers RANBP2-type 89 2004-07-14 2016-02-12 2016-02-12 84083 ENSG00000121988 OTTHUMG00000150475 uc002tum.5 AL136824 NM_032143 "CCDS46419|CCDS67963|CCDS74580" Q5FWF4 11230166 MGI:1918362 RGD:1564952 ZRANB3 615655 +HGNC:13193 ZRK entry withdrawn withdrawn withdrawn Entry Withdrawn 2005-09-06 +HGNC:12456 ZRSR1 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 1 other unknown Approved 5q22.2 05q22.2 "U2AF1-RS1|U2AF1RS1|ZC3H21" U2(RNU2) small nuclear RNA auxiliary factor pseudogene 1 "U2AFBPL|U2AF1P|U2AF1L1" "U2(RNU2) small nuclear RNA auxiliary factor binding protein-like|U2 small nuclear RNA auxillary factor 1-like 1" "Zinc fingers CCCH-type|RNA binding motif containing" "73|725" 1994-07-13 2006-09-26 2016-02-10 2016-02-10 7310 ENSG00000212643 OTTHUMG00000163143 uc021ycm.2 D49676 NM_005083 Q15695 7956352 RGD:1561824 ZRSR1 601079 +HGNC:23019 ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 protein-coding gene gene with protein product Approved Xp22.2 Xp22.2 "U2AF1-RS2|URP|ZC3H22" U2AF1L2 "U2(RNU2) small nuclear RNA auxiliary factor 1-like 2|U2 small nuclear RNA auxiliary factor 1-like 2" "Zinc fingers CCCH-type|RNA binding motif containing" "73|725" 2003-09-24 2006-09-26 2016-02-10 2016-10-12 8233 ENSG00000169249 OTTHUMG00000021184 uc004cxg.5 BC050451 NM_005089 CCDS14172 Q15696 "8586425|9237760|15146077" MGI:103287 RGD:1559763 "Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZRSR2|LRG_618|http://www.lrg-sequence.org/LRG/LRG_618" ZRSR2 300028 +HGNC:23712 ZSCAN1 zinc finger and SCAN domain containing 1 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "FLJ33779|ZNF915" zinc finger with SCAN domain 1 Zinc fingers C2H2-type 28 2004-03-29 2004-04-21 2015-09-14 284312 ENSG00000152467 OTTHUMG00000183381 uc002qrc.1 AK091098 NM_182572 CCDS12969 Q8NBB4 12477932 ZSCAN1 324 +HGNC:20994 ZSCAN2 zinc finger and SCAN domain containing 2 protein-coding gene gene with protein product Approved 15q25.2 15q25.2 "FLJ20595|ZNF854" ZFP29 zinc finger protein 29 Zinc fingers C2H2-type 28 2003-04-30 2004-11-02 2004-11-01 2015-09-11 54993 ENSG00000176371 OTTHUMG00000074027 uc059mrt.1 BC041620 NM_017894 "CCDS10329|CCDS32315|CCDS32316" Q7Z7L9 1937051 MGI:99176 RGD:1584548 ZSCAN2 95 +HGNC:23709 ZSCAN4 zinc finger and SCAN domain containing 4 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ35105 ZNF494 zinc finger protein 494 Zinc fingers C2H2-type 28 2003-12-03 2004-11-02 2004-11-01 2015-09-14 201516 ENSG00000180532 OTTHUMG00000183474 uc002qpu.3 AK092424 NM_152677 CCDS12958 Q8NAM6 24735877 RGD:6485469 ZSCAN4 613419 313 +HGNC:23710 ZSCAN5A zinc finger and SCAN domain containing 5A protein-coding gene gene with protein product Approved 19q13.43 19q13.43 MGC4161 "ZNF495|ZSCAN5" "zinc finger protein 495|zinc finger and SCAN domain containing 5" Zinc fingers C2H2-type 28 2003-12-03 2008-06-10 2008-06-10 2015-09-14 79149 ENSG00000131848 OTTHUMG00000181883 uc002qmr.4 AK098700 NM_024303 "CCDS12941|CCDS82403" Q9BUG6 MGI:2159640 RGD:6488065 ZSCAN5A 291 +HGNC:34246 ZSCAN5B zinc finger and SCAN domain containing 5B protein-coding gene gene with protein product Approved 19q13.43 19q13.43 "ZNF495B|ZNF371" Zinc fingers C2H2-type 28 2008-06-10 2014-10-07 342933 ENSG00000197213 OTTHUMG00000181827 uc061ddz.1 NM_001080456 CCDS46203 A6NJL1 MGI:2159640 RGD:1559143 ZSCAN5B 765 +HGNC:34294 ZSCAN5C zinc finger and SCAN domain containing 5C other unknown Approved 19q13.43 19q13.43 ZNF495C ZSCAN5CP zinc finger and SCAN domain containing 5C, pseudogene Zinc fingers C2H2-type 28 2008-06-10 2016-07-19 2016-07-19 2016-07-19 649137 ENSG00000204532 OTTHUMG00000167475 NG_012782 A6NGD5 ZSCAN5C 766 +HGNC:37706 ZSCAN5DP zinc finger and SCAN domain containing 5D pseudogene pseudogene pseudogene Approved 19q13.43 19q13.43 ZNF495D "ZSCAN5DP|ZSCAN5D" "zinc finger and SCAN domain containing 5D, pseudogene|zinc finger and SCAN domain containing 5D" Zinc fingers C2H2-type 28 2010-01-27 2016-09-27 2016-09-27 2016-09-27 646698 ENSG00000267908 OTTHUMG00000183254 XM_001725568.1 P0CG00 767 +HGNC:12984 ZSCAN9 zinc finger and SCAN domain containing 9 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 PRD51 ZNF193 zinc finger protein 193 Zinc fingers C2H2-type 28 1997-02-14 2013-01-09 2013-01-09 2016-10-05 7746 ENSG00000137185 OTTHUMG00000014515 uc003nkq.3 U62392 NM_006299 "CCDS4646|CCDS56407" O15535 602246 429 +HGNC:12997 ZSCAN10 zinc finger and SCAN domain containing 10 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 ZNF206 zinc finger protein 206 Zinc fingers C2H2-type 28 1999-03-09 2007-02-20 2007-02-20 2015-09-11 84891 ENSG00000130182 OTTHUMG00000177478 uc002ctv.4 AA206569 NM_032805 "CCDS10493|CCDS61813|CCDS61814" Q96SZ4 9653642 MGI:3040700 RGD:1310745 ZSCAN10 98 +HGNC:13172 ZSCAN12 zinc finger and SCAN domain containing 12 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "KIAA0426|ZNF29K1|ZFP96|dJ29K1.2" "ZNF305|ZNF96" "zinc finger protein 305|zinc finger protein 96" Zinc fingers C2H2-type 28 2005-06-02 2007-02-20 2007-02-20 2016-10-05 9753 ENSG00000158691 OTTHUMG00000014522 uc063mll.1 AB007886 NM_014724 O43309 9244436 MGI:1099444 RGD:628738 ZSCAN12 603978 434 +HGNC:13850 ZSCAN12P1 zinc finger and SCAN domain containing 12 pseudogene 1 pseudogene pseudogene Approved 6p22.1 06p22.1 "ZNF187p1|dJ313I6.7" "ZNF305P1|ZNF96P1|ZNF96L1|ZSCAN12L1" "zinc finger protein 305 pseudogene 1|zinc finger protein 96 pseudogene 1|zinc finger protein 96-like 1|zinc finger and SCAN domain containing 12-like 1" 2003-11-27 2010-04-14 2010-04-14 2016-10-05 221584 ENSG00000219891 OTTHUMG00000014502 BC040524 NR_024063 PGOHUM00000243540 1180 +HGNC:20813 ZSCAN16 zinc finger and SCAN domain containing 16 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "FLJ22191|dJ265C24.3" "ZNF392|ZNF435" "zinc finger protein 392|zinc finger protein 435" Zinc fingers C2H2-type 28 2003-04-09 2007-02-20 2007-02-20 2016-10-05 80345 ENSG00000196812 OTTHUMG00000014509 uc003nkm.4 AK025844 NM_025231 CCDS4644 Q9H4T2 ZSCAN16 428 +HGNC:48982 ZSCAN16-AS1 ZSCAN16 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 6p22.1 06p22.1 2013-07-24 2013-07-24 100129195 ENSG00000269293 OTTHUMG00000184041 NR_103455 +HGNC:21037 ZSCAN18 zinc finger and SCAN domain containing 18 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 FLJ12895 ZNF447 zinc finger protein 447 Zinc fingers C2H2-type 28 2003-06-02 2007-02-20 2007-02-20 2015-08-26 65982 ENSG00000121413 OTTHUMG00000183451 uc002qrh.3 "AY280799|AY279352" NM_023926 "CCDS12971|CCDS46214|CCDS46215" Q8TBC5 MGI:3643810 RGD:1560671 ZSCAN18 773 +HGNC:13093 ZSCAN20 zinc finger and SCAN domain containing 20 protein-coding gene gene with protein product Approved 1p35.1 01p35.1 KOX29 "ZNF360|ZNF31" "zinc finger protein 31 (KOX 29)|zinc finger protein 31" "Zinc fingers C2H2-type|Myb/SANT domain containing" "28|532" 1990-06-13 2007-02-20 2007-02-20 2016-10-05 7579 ENSG00000121903 OTTHUMG00000004173 uc001bxj.5 X52360 NM_145238 CCDS41300 P17040 2288909 MGI:2679268 RGD:1562996 ZSCAN20 611315 10 +HGNC:13104 ZSCAN21 zinc finger and SCAN domain containing 21 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 "DKFZp434L134|NY-REN-21|Zipro1" ZNF38 "zinc finger protein 38 (KOX 25)|zinc finger protein 38" Zinc fingers C2H2-type 28 1990-09-30 2006-10-06 2006-10-06 2016-10-05 7589 ENSG00000166529 OTTHUMG00000154583 uc003uso.5 AL136865 NM_145914 CCDS5681 Q9Y5A6 "2288909|2014798" MGI:99182 RGD:1309981 ZSCAN21 601261 459 +HGNC:4929 ZSCAN22 zinc finger and SCAN domain containing 22 protein-coding gene gene with protein product Approved 19q13.43 19q13.43 oncogene HKR2 "ZNF50|HKR2" "zinc finger protein 50|GLI-Kruppel family member HKR2" Zinc fingers C2H2-type 28 1989-05-29 2006-09-20 2006-09-20 2015-08-26 342945 ENSG00000182318 OTTHUMG00000183463 uc002qsc.3 M20675 NM_181846 CCDS12975 P10073 "2850480|1505991" MGI:2443312 ZSCAN22 165260 330 +HGNC:21193 ZSCAN23 zinc finger and SCAN domain containing 23 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 dJ29K1.3.1 "ZNF453|ZNF390" "zinc finger protein 453|zinc finger protein 390" Zinc fingers C2H2-type 28 2003-05-27 2007-02-20 2007-02-20 2016-10-05 222696 ENSG00000187987 OTTHUMG00000016346 uc003nli.5 AK092117 XM_167147 CCDS47393 Q3MJ62 ZSCAN23 1024 +HGNC:21961 ZSCAN25 zinc finger and SCAN domain containing 25 protein-coding gene gene with protein product Approved 7q22.1 07q22.1 FLJ32468 ZNF498 zinc finger protein 498 Zinc fingers C2H2-type 28 2003-12-03 2013-01-09 2013-01-09 2015-08-26 221785 ENSG00000197037 OTTHUMG00000074055 uc003url.1 AK057030 NM_145115 CCDS5671 Q6NSZ9 11179890 MGI:3647079 RGD:1308619 672 +HGNC:12978 ZSCAN26 zinc finger and SCAN domain containing 26 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 SRE-ZBP ZNF187 zinc finger protein 187 Zinc fingers C2H2-type 28 1996-12-12 2013-01-09 2013-01-09 2016-10-05 7741 ENSG00000197062 OTTHUMG00000014519 uc032wpm.2 Z11773 NM_007151 "CCDS75414|CCDS75415|CCDS78119" Q16670 1569959 MGI:3531417 RGD:727885 616474 431 +HGNC:26673 ZSCAN29 zinc finger and SCAN domain containing 29 protein-coding gene gene with protein product Approved 15q15.3 15q15.3 "FLJ35867|Zfp690" ZNF690 zinc finger protein 690 Zinc fingers C2H2-type 28 2005-05-10 2007-03-08 2007-03-08 2015-08-26 146050 ENSG00000140265 OTTHUMG00000130767 uc001zrk.2 AF525399 NM_152455 CCDS10095 Q8IWY8 12434312 MGI:2139317 RGD:1559150 ZSCAN29 94 +HGNC:33517 ZSCAN30 zinc finger and SCAN domain containing 30 protein-coding gene gene with protein product Approved 18q12.2 18q12.2 ZNF917 ZNF397OS "zinc finger protein 397 opposite strand|ZNF397 opposite strand" Zinc fingers C2H2-type 28 2007-07-10 2010-07-23 2010-07-23 2015-09-14 100101467 ENSG00000186814 OTTHUMG00000178569 uc002kyl.5 AY234408 NM_001112734 "CCDS42427|CCDS74207" Q86W11 12801647 MGI:2685600 RGD:1306095 ZSCAN30 602 +HGNC:14097 ZSCAN31 zinc finger and SCAN domain containing 31 protein-coding gene gene with protein product Approved 6p22.1 06p22.1 "ZNF310P|ZNF323" "zinc finger protein 310 pseudogene|zinc finger protein 323" Zinc fingers C2H2-type 28 2000-12-11 2013-01-08 2013-01-08 2016-10-05 64288 ENSG00000235109 OTTHUMG00000014518 uc010jra.4 NM_030899 "CCDS4649|CCDS59001" Q96LW9 610794 432 +HGNC:20812 ZSCAN32 zinc finger and SCAN domain containing 32 protein-coding gene gene with protein product Approved 16p13.3 16p13.3 FLJ20417 ZNF434 zinc finger protein 434 Zinc fingers C2H2-type 28 2003-04-09 2013-01-09 2013-01-09 2014-11-18 54925 ENSG00000140987 OTTHUMG00000129357 uc002cux.5 AK000424 NM_017810 "CCDS10503|CCDS66920|CCDS66921" Q9NX65 104 +HGNC:16155 ZSWIM1 zinc finger SWIM-type containing 1 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 dJ337O18.5 C20orf162 chromosome 20 open reading frame 162 Zinc fingers SWIM-type 90 2001-07-17 2003-12-19 2016-02-15 2016-02-15 90204 ENSG00000168612 OTTHUMG00000074023 uc010ghi.4 AL008726 NM_080603 CCDS13382 Q9BR11 24508175 MGI:1919221 RGD:1305715 ZSWIM1 +HGNC:30990 ZSWIM2 zinc finger SWIM-type containing 2 protein-coding gene gene with protein product Approved 2q32.1 02q32.1 "MGC33890|ZZZ2" "Zinc fingers SWIM-type|Zinc fingers ZZ-type" "90|91" 2003-12-17 2016-02-15 2016-10-05 151112 ENSG00000163012 OTTHUMG00000154259 uc002upu.2 AK128006 NM_182521 CCDS33348 Q8NEG5 12477932 MGI:1919111 RGD:1311373 ZSWIM2 +HGNC:16157 ZSWIM3 zinc finger SWIM-type containing 3 protein-coding gene gene with protein product Approved 20q13.12 20q13.12 "dJ337O18.7|PPP1R174" protein phosphatase 1, regulatory subunit 174 C20orf164 chromosome 20 open reading frame 164 Zinc fingers SWIM-type 90 2001-07-17 2003-12-19 2016-02-15 2016-02-15 140831 ENSG00000132801 OTTHUMG00000032627 uc002xqd.4 AL008726 NM_080752 CCDS13381 Q96MP5 MGI:1914788 RGD:1309789 ZSWIM3 +HGNC:25704 ZSWIM4 zinc finger SWIM-type containing 4 protein-coding gene gene with protein product Approved 19p13.13 19p13.13 FLJ12221 Zinc fingers SWIM-type 90 2003-12-17 2016-02-15 2016-02-15 65249 ENSG00000132003 OTTHUMG00000181752 uc002mxh.1 AK022283 XM_031342 CCDS32924 Q9H7M6 MGI:2443726 RGD:1308020 ZSWIM4 +HGNC:29299 ZSWIM5 zinc finger SWIM-type containing 5 protein-coding gene gene with protein product Approved 1p34.1 01p34.1 KIAA1511 Zinc fingers SWIM-type 90 2003-12-17 2016-02-15 2016-02-15 57643 ENSG00000162415 OTTHUMG00000008950 uc001cnd.3 AB040944 XM_046581 CCDS41319 Q9P217 10819331 MGI:1921714 RGD:1310741 ZSWIM5 +HGNC:43768 ZSWIM5P1 zinc finger SWIM-type containing 5 pseudogene 1 pseudogene pseudogene Approved 17p12 17p12 2012-02-23 2016-02-15 2016-02-15 100130110 ENSG00000235430 OTTHUMG00000059143 NG_022443 PGOHUM00000293964 +HGNC:43769 ZSWIM5P2 zinc finger SWIM-type containing 5 pseudogene 2 pseudogene pseudogene Approved 17p11.2 17p11.2 2012-02-23 2016-02-15 2016-02-15 100132201 ENSG00000231258 OTTHUMG00000059558 NG_022447 PGOHUM00000293997 +HGNC:43770 ZSWIM5P3 zinc finger SWIM-type containing 5 pseudogene 3 pseudogene pseudogene Approved 4q28.2 04q28.2 2012-02-23 2016-02-15 2016-02-15 391697 ENSG00000248958 OTTHUMG00000161310 NG_022037 PGOHUM00000299997 +HGNC:29316 ZSWIM6 zinc finger SWIM-type containing 6 protein-coding gene gene with protein product Approved 5q12.1 05q12.1 KIAA1577 Zinc fingers SWIM-type 90 2003-12-17 2016-02-15 2016-02-15 57688 ENSG00000130449 OTTHUMG00000162388 uc003jsr.4 BC039438 NM_020928 CCDS47215 Q9HCJ5 "10997877|16427614" MGI:1914513 RGD:1306624 ZSWIM6 615951 410706 +HGNC:26993 ZSWIM7 zinc finger SWIM-type containing 7 protein-coding gene gene with protein product Approved 17p12 17p12 SWS1 SWIM domain containing Srs2 interacting protein 1 Zinc fingers SWIM-type 90 2007-03-27 2016-02-15 2016-10-05 125150 ENSG00000214941 OTTHUMG00000059308 uc002gpf.4 AK093384 NM_001042697 CCDS42266 Q19AV6 16710300 MGI:1916997 RGD:1310324 ZSWIM7 614535 +HGNC:23528 ZSWIM8 zinc finger SWIM-type containing 8 protein-coding gene gene with protein product Approved 10q22.2 10q22.2 4832404P21Rik KIAA0913 KIAA0913 Zinc fingers SWIM-type 90 2004-05-27 2012-11-02 2016-02-15 2016-10-05 23053 ENSG00000214655 OTTHUMG00000018486 uc009xrl.4 "BC151206|BC040726" NM_001242487 "CCDS44440|CCDS60560" A7E2V4 MGI:1919156 RGD:1309414 ZSWIM8 +HGNC:45103 ZSWIM8-AS1 ZSWIM8 antisense RNA 1 non-coding RNA RNA, long non-coding Approved 10q22.2 10q22.2 2013-02-15 2015-02-02 100507331 ENSG00000272589 OTTHUMG00000185986 uc057udo.1 NR_038357 +HGNC:21224 ZUFSP zinc finger with UFM1 specific peptidase domain protein-coding gene gene with protein product Approved 6q22.1 06q22.1 dJ412I7.3 C6orf113 chromosome 6 open reading frame 113 Zinc fingers C2H2-type 28 2003-11-25 2008-03-25 2016-03-11 2016-10-05 221302 ENSG00000153975 OTTHUMG00000015445 uc003pxf.3 AK054582 NM_145062 CCDS5110 Q96AP4 MGI:1919830 RGD:1307672 ZUFSP +HGNC:13194 ZW10 zw10 kinetochore protein protein-coding gene gene with protein product Approved 11q23.2 11q23.2 KNTC1AP "ZW10 (Drosophila) homolog, centromere/kinetochore protein|ZW10, kinetochore associated, homolog (Drosophila)" 1999-05-11 2012-12-13 2016-10-05 9183 ENSG00000086827 OTTHUMG00000168190 uc001poe.4 U54996 NM_004724 CCDS8363 O43264 9298984 MGI:1349478 RGD:1309197 ZW10 603954 +HGNC:25468 ZWILCH zwilch kinetochore protein protein-coding gene gene with protein product Approved 15q22.31 15q22.31 "FLJ10036|KNTC1AP" Zwilch, kinetochore associated, homolog (Drosophila) 2005-07-25 2012-12-13 2014-11-19 55055 ENSG00000174442 OTTHUMG00000133194 uc002aqb.5 AK023175 NM_017975 "CCDS10219|CCDS73746" Q9H900 12686595 MGI:1915264 RGD:1583880 ZWILCH 609984 +HGNC:13195 ZWINT ZW10 interacting kinetochore protein protein-coding gene gene with protein product Approved 10q21-q22 10q21-q22 "KNTC2AP|SIP30|Zwint1" SNAP25 interacting protein of 30 kDa ZW10 interactor 2001-06-22 2013-05-01 2016-04-19 11130 ENSG00000122952 OTTHUMG00000018261 uc001jjx.2 AF067656 XM_017015605 "CCDS7249|CCDS31205" O95229 10806105 MGI:1289227 RGD:628671 ZWINT 609177 +HGNC:13196 ZWINTAS entry withdrawn withdrawn withdrawn Entry Withdrawn 2012-10-12 +HGNC:13198 ZXDA zinc finger, X-linked, duplicated A protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 ZNF896 zinc finger protein 896 Zinc fingers C2H2-type 28 1993-11-02 2015-09-11 7789 ENSG00000198205 OTTHUMG00000021688 uc004dve.4 L14787 NM_007156 CCDS14376 P98168 8268913 MGI:3694898 Mental Retardation database|http://grenada.lumc.nl/LOVD2/MR/home.php?select_db=ZXDA ZXDA 300235 573 +HGNC:13199 ZXDB zinc finger, X-linked, duplicated B protein-coding gene gene with protein product Approved Xp11.21 Xp11.21 ZNF905 Zinc fingers C2H2-type 28 1994-08-29 2016-10-05 158586 ENSG00000198455 OTTHUMG00000021685 uc004dvd.4 L14788 NM_007157 CCDS35313 P98169 8268913 MGI:3694898 RGD:1563355 ZXDB 300236 572 +HGNC:28160 ZXDC ZXD family zinc finger C protein-coding gene gene with protein product Approved 3q21.3 03q21.3 "MGC11349|FLJ13861" Zinc fingers C2H2-type 28 2005-05-10 2015-08-24 79364 ENSG00000070476 OTTHUMG00000162754 uc003eiv.3 AK023923 NM_025112 "CCDS43145|CCDS43146" Q2QGD7 "8619474|9110174" MGI:1933108 RGD:1561296 ZXDC 615746 +HGNC:32058 ZYG11A zyg-11 family member A, cell cycle regulator protein-coding gene gene with protein product Approved 1p32.3 01p32.3 ZYG11 zyg-11 homolog A (C. elegans) ZYG11 cell cycle regulator family 6 2005-07-11 2012-12-10 2015-08-26 440590 ENSG00000203995 OTTHUMG00000008923 uc001cuk.3 NM_001004339 "CCDS44148|CCDS76166" Q6WRX3 MGI:2446208 RGD:1309582 ZYG11A +HGNC:38032 ZYG11AP1 zyg-11 family member A, cell cycle regulator pseudogene 1 pseudogene pseudogene Approved 9q31.1 09q31.1 zyg-11 homolog A (C. elegans) pseudogene 1 2010-03-23 2012-12-10 2015-05-07 100131879 ENSG00000232242 OTTHUMG00000020394 NG_021631 PGOHUM00000304018 +HGNC:25820 ZYG11B zyg-11 family member B, cell cycle regulator protein-coding gene gene with protein product Approved 1p32.3 01p32.3 FLJ13456 ZYG11 "zyg-11 homolog (C. elegans)|zyg-11 homolog B (C. elegans)" ZYG11 cell cycle regulator family 6 2005-06-06 2005-07-11 2012-12-10 2015-08-26 79699 ENSG00000162378 OTTHUMG00000008938 uc001cuj.4 AB051517 NM_024646 CCDS30717 Q9C0D3 11214970 MGI:2685277 RGD:1307814 ZYG11B +HGNC:13200 ZYX zyxin protein-coding gene gene with protein product Approved 7q34 07q34 LIM domain containing 1218 1997-10-16 2016-10-05 7791 ENSG00000159840 OTTHUMG00000023822 uc003wcx.5 X95735 NM_003461 CCDS5883 Q15942 "8917469|8940160" MGI:103072 RGD:620698 ZYX 602002 +HGNC:51695 ZYXP1 zyxin pseudogene 1 pseudogene pseudogene Approved 8q24.23 08q24.23 2015-05-07 2015-05-07 106480342 ENSG00000274572 OTTHUMG00000187758 NG_044600 PGOHUM00000303383 +HGNC:29027 ZZEF1 zinc finger ZZ-type and EF-hand domain containing 1 protein-coding gene gene with protein product Approved 17p13.2 17p13.2 "KIAA0399|ZZZ4|FLJ10821" zinc finger, ZZ-type with EF hand domain 1 "Zinc fingers ZZ-type|EF-hand domain containing" "91|863" 2004-02-27 2016-02-12 2016-10-05 23140 ENSG00000074755 OTTHUMG00000090741 uc002fxe.4 BC035319 NM_015113 CCDS11043 O43149 9455477 MGI:2444286 RGD:1311189 ZZEF1 +HGNC:24523 ZZZ3 zinc finger ZZ-type containing 3 protein-coding gene gene with protein product Approved 1p31.1 01p31.1 "DKFZP564I052|ATAC1" ATAC component 1 homolog (Drosophila) "Zinc fingers ZZ-type|Myb/SANT domain containing|ATAC complex" "91|532|1058" 2004-01-13 2016-02-12 2016-02-12 26009 ENSG00000036549 OTTHUMG00000009652 uc001dhq.4 AL080063 NM_015534 "CCDS677|CCDS76172" Q8IYH5 "16428443|21304275" MGI:1920453 RGD:1565468 ZZZ3 diff --git a/exomiser-spring-boot-autoconfigure/.mvn/wrapper/maven-wrapper.jar b/exomiser-spring-boot-autoconfigure/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-spring-boot-autoconfigure/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-spring-boot-autoconfigure/.mvn/wrapper/maven-wrapper.properties b/exomiser-spring-boot-autoconfigure/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/exomiser-spring-boot-autoconfigure/mvnw b/exomiser-spring-boot-autoconfigure/mvnw new file mode 100644 index 000000000..5bf251c07 --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/mvnw @@ -0,0 +1,225 @@ +#!/bin/sh +# ---------------------------------------------------------------------------- +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +# ---------------------------------------------------------------------------- + +# ---------------------------------------------------------------------------- +# Maven2 Start Up Batch script +# +# Required ENV vars: +# ------------------ +# JAVA_HOME - location of a JDK home dir +# +# Optional ENV vars +# ----------------- +# M2_HOME - location of maven2's installed home dir +# MAVEN_OPTS - parameters passed to the Java VM when running Maven +# e.g. to debug Maven itself, use +# set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +# MAVEN_SKIP_RC - flag to disable loading of mavenrc files +# ---------------------------------------------------------------------------- + +if [ -z "$MAVEN_SKIP_RC" ] ; then + + if [ -f /etc/mavenrc ] ; then + . /etc/mavenrc + fi + + if [ -f "$HOME/.mavenrc" ] ; then + . "$HOME/.mavenrc" + fi + +fi + +# OS specific support. $var _must_ be set to either true or false. +cygwin=false; +darwin=false; +mingw=false +case "`uname`" in + CYGWIN*) cygwin=true ;; + MINGW*) mingw=true;; + Darwin*) darwin=true + # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home + # See https://developer.apple.com/library/mac/qa/qa1170/_index.html + if [ -z "$JAVA_HOME" ]; then + if [ -x "/usr/libexec/java_home" ]; then + export JAVA_HOME="`/usr/libexec/java_home`" + else + export JAVA_HOME="/Library/Java/Home" + fi + fi + ;; +esac + +if [ -z "$JAVA_HOME" ] ; then + if [ -r /etc/gentoo-release ] ; then + JAVA_HOME=`java-config --jre-home` + fi +fi + +if [ -z "$M2_HOME" ] ; then + ## resolve links - $0 may be a link to maven's home + PRG="$0" + + # need this for relative symlinks + while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG="`dirname "$PRG"`/$link" + fi + done + + saveddir=`pwd` + + M2_HOME=`dirname "$PRG"`/.. + + # make it fully qualified + M2_HOME=`cd "$M2_HOME" && pwd` + + cd "$saveddir" + # echo Using m2 at $M2_HOME +fi + +# For Cygwin, ensure paths are in UNIX format before anything is touched +if $cygwin ; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --unix "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --unix "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --unix "$CLASSPATH"` +fi + +# For Migwn, ensure paths are in UNIX format before anything is touched +if $mingw ; then + [ -n "$M2_HOME" ] && + M2_HOME="`(cd "$M2_HOME"; pwd)`" + [ -n "$JAVA_HOME" ] && + JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`" + # TODO classpath? +fi + +if [ -z "$JAVA_HOME" ]; then + javaExecutable="`which javac`" + if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then + # readlink(1) is not available as standard on Solaris 10. + readLink=`which readlink` + if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then + if $darwin ; then + javaHome="`dirname \"$javaExecutable\"`" + javaExecutable="`cd \"$javaHome\" && pwd -P`/javac" + else + javaExecutable="`readlink -f \"$javaExecutable\"`" + fi + javaHome="`dirname \"$javaExecutable\"`" + javaHome=`expr "$javaHome" : '\(.*\)/bin'` + JAVA_HOME="$javaHome" + export JAVA_HOME + fi + fi +fi + +if [ -z "$JAVACMD" ] ; then + if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + else + JAVACMD="`which java`" + fi +fi + +if [ ! -x "$JAVACMD" ] ; then + echo "Error: JAVA_HOME is not defined correctly." >&2 + echo " We cannot execute $JAVACMD" >&2 + exit 1 +fi + +if [ -z "$JAVA_HOME" ] ; then + echo "Warning: JAVA_HOME environment variable is not set." +fi + +CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher + +# traverses directory structure from process work directory to filesystem root +# first directory with .mvn subdirectory is considered project base directory +find_maven_basedir() { + + if [ -z "$1" ] + then + echo "Path not specified to find_maven_basedir" + return 1 + fi + + basedir="$1" + wdir="$1" + while [ "$wdir" != '/' ] ; do + if [ -d "$wdir"/.mvn ] ; then + basedir=$wdir + break + fi + # workaround for JBEAP-8937 (on Solaris 10/Sparc) + if [ -d "${wdir}" ]; then + wdir=`cd "$wdir/.."; pwd` + fi + # end of workaround + done + echo "${basedir}" +} + +# concatenates all lines of a file +concat_lines() { + if [ -f "$1" ]; then + echo "$(tr -s '\n' ' ' < "$1")" + fi +} + +BASE_DIR=`find_maven_basedir "$(pwd)"` +if [ -z "$BASE_DIR" ]; then + exit 1; +fi + +export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"} +echo $MAVEN_PROJECTBASEDIR +MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS" + +# For Cygwin, switch paths to Windows format before running java +if $cygwin; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --path --windows "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --windows "$CLASSPATH"` + [ -n "$MAVEN_PROJECTBASEDIR" ] && + MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"` +fi + +WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +exec "$JAVACMD" \ + $MAVEN_OPTS \ + -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \ + "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \ + ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@" diff --git a/exomiser-spring-boot-autoconfigure/mvnw.cmd b/exomiser-spring-boot-autoconfigure/mvnw.cmd new file mode 100644 index 000000000..019bd74d7 --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/mvnw.cmd @@ -0,0 +1,143 @@ +@REM ---------------------------------------------------------------------------- +@REM Licensed to the Apache Software Foundation (ASF) under one +@REM or more contributor license agreements. See the NOTICE file +@REM distributed with this work for additional information +@REM regarding copyright ownership. The ASF licenses this file +@REM to you under the Apache License, Version 2.0 (the +@REM "License"); you may not use this file except in compliance +@REM with the License. You may obtain a copy of the License at +@REM +@REM http://www.apache.org/licenses/LICENSE-2.0 +@REM +@REM Unless required by applicable law or agreed to in writing, +@REM software distributed under the License is distributed on an +@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +@REM KIND, either express or implied. See the License for the +@REM specific language governing permissions and limitations +@REM under the License. +@REM ---------------------------------------------------------------------------- + +@REM ---------------------------------------------------------------------------- +@REM Maven2 Start Up Batch script +@REM +@REM Required ENV vars: +@REM JAVA_HOME - location of a JDK home dir +@REM +@REM Optional ENV vars +@REM M2_HOME - location of maven2's installed home dir +@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands +@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a key stroke before ending +@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven +@REM e.g. to debug Maven itself, use +@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files +@REM ---------------------------------------------------------------------------- + +@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on' +@echo off +@REM enable echoing my setting MAVEN_BATCH_ECHO to 'on' +@if "%MAVEN_BATCH_ECHO%" == "on" echo %MAVEN_BATCH_ECHO% + +@REM set %HOME% to equivalent of $HOME +if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%") + +@REM Execute a user defined script before this one +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre +@REM check for pre script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat" +if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd" +:skipRcPre + +@setlocal + +set ERROR_CODE=0 + +@REM To isolate internal variables from possible post scripts, we use another setlocal +@setlocal + +@REM ==== START VALIDATION ==== +if not "%JAVA_HOME%" == "" goto OkJHome + +echo. +echo Error: JAVA_HOME not found in your environment. >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +:OkJHome +if exist "%JAVA_HOME%\bin\java.exe" goto init + +echo. +echo Error: JAVA_HOME is set to an invalid directory. >&2 +echo JAVA_HOME = "%JAVA_HOME%" >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +@REM ==== END VALIDATION ==== + +:init + +@REM Find the project base dir, i.e. the directory that contains the folder ".mvn". +@REM Fallback to current working directory if not found. + +set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR% +IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir + +set EXEC_DIR=%CD% +set WDIR=%EXEC_DIR% +:findBaseDir +IF EXIST "%WDIR%"\.mvn goto baseDirFound +cd .. +IF "%WDIR%"=="%CD%" goto baseDirNotFound +set WDIR=%CD% +goto findBaseDir + +:baseDirFound +set MAVEN_PROJECTBASEDIR=%WDIR% +cd "%EXEC_DIR%" +goto endDetectBaseDir + +:baseDirNotFound +set MAVEN_PROJECTBASEDIR=%EXEC_DIR% +cd "%EXEC_DIR%" + +:endDetectBaseDir + +IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig + +@setlocal EnableExtensions EnableDelayedExpansion +for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a +@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS% + +:endReadAdditionalConfig + +SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe" + +set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar" +set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %* +if ERRORLEVEL 1 goto error +goto end + +:error +set ERROR_CODE=1 + +:end +@endlocal & set ERROR_CODE=%ERROR_CODE% + +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost +@REM check for post script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat" +if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd" +:skipRcPost + +@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on' +if "%MAVEN_BATCH_PAUSE%" == "on" pause + +if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE% + +exit /B %ERROR_CODE% diff --git a/exomiser-spring-boot-autoconfigure/pom.xml b/exomiser-spring-boot-autoconfigure/pom.xml new file mode 100644 index 000000000..3d8216f91 --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/pom.xml @@ -0,0 +1,94 @@ + + + + + + 4.0.0 + + exomiser-spring-boot-autoconfigure + jar + + exomiser-spring-boot-autoconfigure + Spring boot auto-configuration for the Exomiser + + + org.monarchinitiative + exomiser + 8.0.0 + + + + UTF-8 + + + + + org.springframework.boot + spring-boot-dependencies + ${spring-boot.version} + pom + + + org.springframework.boot + spring-boot + + + org.springframework.boot + spring-boot-autoconfigure + + + org.springframework.boot + spring-boot-configuration-processor + true + + + org.springframework.boot + spring-boot-starter-cache + + + net.sf.ehcache + ehcache + + + + com.github.ben-manes.caffeine + caffeine + + + org.springframework.boot + spring-boot-test + test + + + org.monarchinitiative + exomiser-core + ${project.version} + true + + + org.mockito + mockito-core + RELEASE + + + diff --git a/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/EnableExomiser.java b/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/EnableExomiser.java new file mode 100644 index 000000000..5b6047aed --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/EnableExomiser.java @@ -0,0 +1,35 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.autoconfigure; + +import org.springframework.context.annotation.Import; + +import java.lang.annotation.*; + +/** + * @author Jules Jacobsen + */ +@Retention(RetentionPolicy.RUNTIME) +@Target({ElementType.TYPE}) +@Documented +@Import(ExomiserAutoConfiguration.class) +public @interface EnableExomiser { +} diff --git a/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfiguration.java b/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfiguration.java new file mode 100644 index 000000000..b0c7adebd --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfiguration.java @@ -0,0 +1,377 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.autoconfigure; + +import com.zaxxer.hikari.HikariConfig; +import com.zaxxer.hikari.HikariDataSource; +import de.charite.compbio.jannovar.data.JannovarData; +import de.charite.compbio.jannovar.data.JannovarDataSerializer; +import de.charite.compbio.jannovar.data.SerializationException; +import htsjdk.tribble.readers.TabixReader; +import org.monarchinitiative.exomiser.core.Exomiser; +import org.monarchinitiative.exomiser.core.analysis.AnalysisFactory; +import org.monarchinitiative.exomiser.core.genome.dao.ErrorThrowingTabixDataSource; +import org.monarchinitiative.exomiser.core.genome.dao.TabixDataSource; +import org.monarchinitiative.exomiser.core.genome.dao.TabixReaderAdaptor; +import org.monarchinitiative.exomiser.core.model.frequency.FrequencySource; +import org.monarchinitiative.exomiser.core.model.pathogenicity.PathogenicitySource; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrix; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrixIO; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.boot.autoconfigure.condition.ConditionalOnClass; +import org.springframework.boot.autoconfigure.condition.ConditionalOnMissingBean; +import org.springframework.boot.context.properties.EnableConfigurationProperties; +import org.springframework.cache.CacheManager; +import org.springframework.cache.annotation.EnableCaching; +import org.springframework.cache.concurrent.ConcurrentMapCacheManager; +import org.springframework.cache.ehcache.EhCacheCacheManager; +import org.springframework.cache.ehcache.EhCacheManagerFactoryBean; +import org.springframework.cache.interceptor.CacheResolver; +import org.springframework.cache.interceptor.NamedCacheResolver; +import org.springframework.cache.support.NoOpCacheManager; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.ComponentScan; +import org.springframework.context.annotation.Configuration; +import org.springframework.context.annotation.Lazy; +import org.springframework.core.io.ClassPathResource; +import org.springframework.core.io.Resource; + +import javax.sql.DataSource; +import java.io.File; +import java.io.IOException; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.List; + +/** + * @author Jules Jacobsen + */ +@Configuration +@EnableCaching +@ConditionalOnClass({Exomiser.class, AnalysisFactory.class}) +@EnableConfigurationProperties(ExomiserProperties.class) +@ComponentScan("org.monarchinitiative.exomiser.core") +public class ExomiserAutoConfiguration { + + private static final Logger logger = LoggerFactory.getLogger(ExomiserAutoConfiguration.class); + + @Autowired + private ExomiserProperties properties; + + /** + * This is critical for the application to run as it points to the data + * directory where all the required resources are found. Without this being + * correctly set, the application will fail. + * + * @return + */ + @Bean + public Path exomiserDataDirectory() { + Path dataPath = Paths.get(properties.getDataDirectory()); + logger.info("Exomiser data directory set to: {}", dataPath.toAbsolutePath()); + return dataPath; + } + + private Path resolveRelativeToDataDir(String fileName) { + return exomiserDataDirectory().resolve(fileName); + } + + @Bean + public Path exomiserWorkingDirectory() { + Path workingDir = Paths.get(getWorkingDir()); + logger.info("Exomiser working directory set to: {}", workingDir.toAbsolutePath()); + return workingDir; + } + + private String getWorkingDir() { + if (properties.getWorkingDirectory() != null) { + return properties.getWorkingDirectory(); + } + String tempDirectory = System.getProperty("java.io.tmpdir"); + return new File(tempDirectory, "exomiser-data").getAbsolutePath(); + } + + //Variant analysis configuration + @Bean + public Path transcriptFilePath() { + String transcriptFileNameValue = properties.getTranscriptDataFileName(); + Path transcriptFilePath = resolveRelativeToDataDir(transcriptFileNameValue); + logger.debug("Transcript data file: {}", transcriptFilePath.toAbsolutePath()); + return transcriptFilePath; + } + + /** + * This takes a few seconds to de-serialise. Can be overridden by defining your own bean. + */ + @Lazy + @Bean + @ConditionalOnMissingBean + public JannovarData jannovarData(Path transcriptFilePath) { + try { + return new JannovarDataSerializer(transcriptFilePath.toString()).load(); + } catch (SerializationException e) { + throw new ExomiserAutoConfigurationException("Could not load Jannovar data from " + transcriptFilePath, e); + } + } + + /** + * Optional full system path to CADD InDels.tsv.gz and InDels.tsv.gz.tbi file pair. + * These can be downloaded from http://cadd.gs.washington.edu/download - v1.3 has been tested. + *

    + * Default is empty and will return no data. + * + * @return + */ + @Lazy + @Bean + public TabixDataSource caddInDelTabixDataSource() { + String caddInDelPath = properties.getCaddInDelPath(); + logTabixPathIfNotEmpty("Reading CADD InDel file from:", caddInDelPath); + return getTabixDataSourceOrDefaultForProperty(caddInDelPath, PathogenicitySource.CADD.name()); + } + + /** + * Optional full system path to CADD whole_genome_SNVs.tsv.gz and whole_genome_SNVs.tsv.gz.tbi file pair. + * These can be downloaded from http://cadd.gs.washington.edu/download - v1.3 has been tested. + *

    + * Default is empty and will return no data. + * + * @return + */ + @Lazy + @Bean + public TabixDataSource caddSnvTabixDataSource() { + String caddSnvPath = properties.getCaddSnvPath(); + logTabixPathIfNotEmpty("Reading CADD snv file from:", caddSnvPath); + return getTabixDataSourceOrDefaultForProperty(caddSnvPath, PathogenicitySource.CADD.name()); + } + + /** + * Optional full system path to REMM remmData.tsv.gz and remmData.tsv.gz.tbi file pair. + *

    + * Default is empty and will return no data. + * + * @return + */ + @Lazy + @Bean + public TabixDataSource remmTabixDataSource() { + String remmPath = properties.getRemmPath(); + logTabixPathIfNotEmpty("Reading REMM data file from:", remmPath); + return getTabixDataSourceOrDefaultForProperty(remmPath, PathogenicitySource.REMM.name()); + } + + /** + * Optional full system path to local frequency .tsv.gz and .tsv.gz.tbi file pair. + *

    + * Default is empty and will return no data. + * + * @return + */ + @Lazy + @Bean + public TabixDataSource localFrequencyTabixDataSource() { + String localFrequencyPath = properties.getLocalFrequencyPath(); + logTabixPathIfNotEmpty("Reading LOCAL frequency file from:", localFrequencyPath); + return getTabixDataSourceOrDefaultForProperty(localFrequencyPath, FrequencySource.LOCAL.name()); + } + + private void logTabixPathIfNotEmpty(String prefixMessage, String tabixPath) { + if (!tabixPath.isEmpty()) { + logger.info("{} {}", prefixMessage, tabixPath); + } + } + + private TabixDataSource getTabixDataSourceOrDefaultForProperty(String pathToTabixGzFile, String dataSourceName) { + String tabixGzPathValue = pathToTabixGzFile; + if (tabixGzPathValue.isEmpty()) { + logger.warn("Data for {} is not configured. THIS WILL LEAD TO ERRORS IF REQUIRED DURING ANALYSIS. Check the application.properties is pointing to a valid file.", dataSourceName); + String message = "Data for " + dataSourceName + " is not configured. Check the application.properties is pointing to a valid file."; + return new ErrorThrowingTabixDataSource(message); + } + TabixReader tabixReader; + try { + tabixReader = new TabixReader(tabixGzPathValue); + } catch (IOException e) { + throw new ExomiserAutoConfigurationException(tabixGzPathValue + " file not found. Please check exomiser properties file points to a valid tabix .gz file.", e); + } + return new TabixReaderAdaptor(tabixReader); + } + + //Prioritiser configuration + + @Bean + public Path phenixDataDirectory() { + String phenixDataDirValue = properties.getPhenixDataDir(); + Path phenixDataDirectory = resolveRelativeToDataDir(phenixDataDirValue); + logger.debug("phenixDataDirectory: {}", phenixDataDirectory.toAbsolutePath()); + return phenixDataDirectory; + } + + @Bean + @ConditionalOnMissingBean(name = "hpoOboFilePath") + public Path hpoOboFilePath() { + String hpoFileName = properties.getHpoFileName(); + Path hpoFilePath = phenixDataDirectory().resolve(hpoFileName); + logger.debug("hpoOboFilePath: {}", hpoFilePath.toAbsolutePath()); + return hpoFilePath; + } + + @Bean + @ConditionalOnMissingBean(name = "hpoAnnotationFilePath") + public Path hpoAnnotationFilePath() { + String hpoAnnotationFileValue = properties.getHpoAnnotationFile(); + Path hpoAnnotationFilePath = phenixDataDirectory().resolve(hpoAnnotationFileValue); + logger.debug("hpoAnnotationFilePath: {}", hpoAnnotationFilePath.toAbsolutePath()); + return hpoAnnotationFilePath; + } + + /** + * This needs a lot of RAM and is slow to create from the randomWalkFile, so + * it's set as lazy use on the command-line. + * + * @return + */ + @Lazy + @Bean + @ConditionalOnMissingBean(name = "randomWalkMatrix") + public DataMatrix randomWalkMatrix() { + String randomWalkFileNameValue = properties.getRandomWalkFileName(); + Path randomWalkFilePath = resolveRelativeToDataDir(randomWalkFileNameValue); + + String randomWalkIndexFileNameValue = properties.getRandomWalkIndexFileName(); + Path randomWalkIndexFilePath = resolveRelativeToDataDir(randomWalkIndexFileNameValue); + + return DataMatrixIO.loadDataMatrix(randomWalkFilePath.toString(), randomWalkIndexFilePath.toString(), true); + } + + @Bean + @ConditionalOnMissingBean + public DataSource dataSource() { + HikariDataSource dataSource; + + dataSource = new HikariDataSource(h2Config()); + + logger.info("DataSource using maximum of {} database connections", dataSource.getMaximumPoolSize()); + logger.info("Returning a new {} DataSource pool to URL {} user: {}", dataSource.getPoolName(), dataSource.getJdbcUrl(), dataSource.getUsername()); + return dataSource; + } + + @Bean + @ConditionalOnMissingBean + public HikariConfig h2Config() { + + ExomiserProperties.H2 h2 = properties.getH2(); + + HikariConfig config = new HikariConfig(); + config.setDriverClassName("org.h2.Driver"); + config.setJdbcUrl(determineH2Url(h2)); + config.setUsername(h2.getUser()); + config.setPassword(h2.getPassword()); + config.setMaximumPoolSize(h2.getMaxConnections()); + config.setPoolName("exomiser-H2"); + + return config; + } + + private String determineH2Url(ExomiserProperties.H2 h2) { + //the data path is the default place for the exomiser H2 database to be found. + if (h2.getDirectory().isEmpty()) { + logger.info("H2 path not set. Using default data path: {}", exomiserDataDirectory()); + return resolveH2UrlPathPlaceholder(h2.getUrl(), exomiserDataDirectory().toAbsolutePath().toString()); + } else { + logger.info("Using user defined H2 path: {}", h2.getDirectory()); + return resolveH2UrlPathPlaceholder(h2.getUrl(), h2.getDirectory()); + } + } + + private String resolveH2UrlPathPlaceholder(String h2Url, String h2AbsolutePath) { + return h2Url.replace("${h2Path}", h2AbsolutePath); + } + + @Bean + public CacheResolver modelCacheResolver() { + NamedCacheResolver modelCacheResolver = new NamedCacheResolver(); + //these guys are relatively small, always accessed and never grow so were using a ConcurrentMap to store them. + modelCacheResolver.setCacheNames(Arrays.asList("models")); + modelCacheResolver.setCacheManager(new ConcurrentMapCacheManager()); + return modelCacheResolver; + } + + @Bean + @ConditionalOnMissingBean + public CacheManager cacheManager() { + String cacheOption = properties.getCache(); + //see http://docs.spring.io/spring/docs/current/spring-framework-reference/html/cache.html for how this works + CacheManager cacheManager; + List cacheNames = new ArrayList<>(); + switch (cacheOption) { + case "none": + cacheManager = noOpCacheManager(); + break; + case "mem": + cacheManager = new ConcurrentMapCacheManager("pathogenicity", "frequency", "diseaseHp", "diseases","hpo", "mpo", "zpo", "cadd", "remm"); + cacheNames.addAll(cacheManager.getCacheNames()); + break; + case "ehcache": + cacheManager = ehCacheCacheManager(); + cacheNames.addAll(Arrays.asList(ehCacheCacheManager().getCacheManager().getCacheNames())); + break; + default: + String message = String.format("Unrecognised value '%s' for exomiser cache option. Please choose 'none', 'mem' or 'ehcache'.", cacheOption); + logger.error(message); + throw new ExomiserAutoConfigurationException(message); + } + logger.info("Set up {} caches: {}", cacheOption, cacheNames); + return cacheManager; + } + + private NoOpCacheManager noOpCacheManager() { + logger.info("Caching disabled."); + return new NoOpCacheManager(); + } + + private EhCacheCacheManager ehCacheCacheManager() { + return new EhCacheCacheManager(ehCacheManager().getObject()); + } + + @Bean + @ConditionalOnMissingBean + public Resource ehCacheConfig() { + return new ClassPathResource("ehcache.xml"); + } + + @Lazy + @Bean + public EhCacheManagerFactoryBean ehCacheManager() { + Resource ehCacheConfig = ehCacheConfig(); + logger.info("Loading ehcache.xml from {}", ehCacheConfig.getDescription()); + + EhCacheManagerFactoryBean ehCacheManagerFactoryBean = new EhCacheManagerFactoryBean(); + ehCacheManagerFactoryBean.setConfigLocation(ehCacheConfig); + return ehCacheManagerFactoryBean; + } + +} diff --git a/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfigurationException.java b/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfigurationException.java new file mode 100644 index 000000000..54124d3a0 --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfigurationException.java @@ -0,0 +1,43 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.autoconfigure; + +/** + * @author Jules Jacobsen + */ +public class ExomiserAutoConfigurationException extends RuntimeException { + + public ExomiserAutoConfigurationException() { + super(); + } + + public ExomiserAutoConfigurationException(String message) { + super(message); + } + + public ExomiserAutoConfigurationException(String message, Throwable cause) { + super(message, cause); + } + + public ExomiserAutoConfigurationException(Throwable cause) { + super(cause); + } +} diff --git a/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserProperties.java b/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserProperties.java new file mode 100644 index 000000000..afed4c7e7 --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/main/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserProperties.java @@ -0,0 +1,230 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.autoconfigure; + +import org.springframework.boot.context.properties.ConfigurationProperties; +import org.springframework.boot.context.properties.NestedConfigurationProperty; + +/** + * @author Jules Jacobsen + */ +@ConfigurationProperties(prefix = "exomiser") +public class ExomiserProperties { + + private String dataDirectory; + + private String workingDirectory; + + @NestedConfigurationProperty + private ExomiserProperties.H2 h2 = new H2(); + + //genomiser variant data files + private String caddSnvPath = ""; + private String caddInDelPath = ""; + private String remmPath = ""; + + private String localFrequencyPath = ""; + + //http://docs.spring.io/spring-boot/docs/current/reference/html/boot-features-caching.html +// private CacheType cache = CacheType.NONE; + + /** + * none/mem/ehcache + */ + private String cache = "none"; + + /** + * name of transcript data .ser file created from Jannovar for defining known exon locations + */ + private String transcriptDataFileName = "hg19_ucsc.ser"; + + //Random walk matrix for hiPhive and exomeWalker + private String randomWalkFileName = "rw_string_9_05.gz"; + private String randomWalkIndexFileName = "rw_string_9_05_id2index.gz"; + + //Phenix data + private String phenixDataDir = "phenix"; + private String hpoFileName = "hp.obo"; + private String hpoAnnotationFile = "ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt"; + + public String getDataDirectory() { + return dataDirectory; + } + + public void setDataDirectory(String dataDirectory) { + this.dataDirectory = dataDirectory; + } + + public String getWorkingDirectory() { + return workingDirectory; + } + + public void setWorkingDirectory(String workingDirectory) { + this.workingDirectory = workingDirectory; + } + + public ExomiserProperties.H2 getH2() { + return h2; + } + + public void setH2(ExomiserProperties.H2 h2) { + this.h2 = h2; + } + + public String getCaddSnvPath() { + return caddSnvPath; + } + + public void setCaddSnvPath(String caddSnvPath) { + this.caddSnvPath = caddSnvPath; + } + + public String getCaddInDelPath() { + return caddInDelPath; + } + + public void setCaddInDelPath(String caddInDelPath) { + this.caddInDelPath = caddInDelPath; + } + + public String getRemmPath() { + return remmPath; + } + + public void setRemmPath(String remmPath) { + this.remmPath = remmPath; + } + + public String getLocalFrequencyPath() { + return localFrequencyPath; + } + + public void setLocalFrequencyPath(String localFrequencyPath) { + this.localFrequencyPath = localFrequencyPath; + } + + public String getCache() { + return cache; + } + + public void setCache(String cache) { + this.cache = cache; + } + + public String getTranscriptDataFileName() { + return transcriptDataFileName; + } + + public void setTranscriptDataFileName(String transcriptDataFileName) { + this.transcriptDataFileName = transcriptDataFileName; + } + + public String getRandomWalkFileName() { + return randomWalkFileName; + } + + public void setRandomWalkFileName(String randomWalkFileName) { + this.randomWalkFileName = randomWalkFileName; + } + + public String getRandomWalkIndexFileName() { + return randomWalkIndexFileName; + } + + public void setRandomWalkIndexFileName(String randomWalkIndexFileName) { + this.randomWalkIndexFileName = randomWalkIndexFileName; + } + + public String getPhenixDataDir() { + return phenixDataDir; + } + + public void setPhenixDataDir(String phenixDataDir) { + this.phenixDataDir = phenixDataDir; + } + + public String getHpoFileName() { + return hpoFileName; + } + + public void setHpoFileName(String hpoFileName) { + this.hpoFileName = hpoFileName; + } + + public String getHpoAnnotationFile() { + return hpoAnnotationFile; + } + + public void setHpoAnnotationFile(String hpoAnnotationFile) { + this.hpoAnnotationFile = hpoAnnotationFile; + } + + public static class H2 { + + private String directory = ""; + + private String user = "sa"; + private String password = ""; + private String url = "jdbc:h2:file:${h2Path}/exomiser;MODE=PostgreSQL;SCHEMA=EXOMISER;DATABASE_TO_UPPER=FALSE;IFEXISTS=TRUE;AUTO_RECONNECT=TRUE;ACCESS_MODE_DATA=r;"; + private int maxConnections = 3; + + + public String getDirectory() { + return directory; + } + + public void setDirectory(String directory) { + this.directory = directory; + } + + public String getUser() { + return user; + } + + public void setUser(String user) { + this.user = user; + } + + public String getPassword() { + return password; + } + + public void setPassword(String password) { + this.password = password; + } + + public String getUrl() { + return url; + } + + public void setUrl(String url) { + this.url = url; + } + + public int getMaxConnections() { + return maxConnections; + } + + public void setMaxConnections(int maxConnections) { + this.maxConnections = maxConnections; + } + } +} diff --git a/exomiser-spring-boot-autoconfigure/src/main/resources/META-INF/spring.factories b/exomiser-spring-boot-autoconfigure/src/main/resources/META-INF/spring.factories new file mode 100644 index 000000000..8663c9f8f --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/main/resources/META-INF/spring.factories @@ -0,0 +1 @@ +org.springframework.boot.autoconfigure.EnableAutoConfiguration=org.monarchinitiative.exomiser.autoconfigure.ExomiserAutoConfiguration \ No newline at end of file diff --git a/exomiser-spring-boot-autoconfigure/src/main/resources/ehcache.xml b/exomiser-spring-boot-autoconfigure/src/main/resources/ehcache.xml new file mode 100644 index 000000000..bcbf53acc --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/main/resources/ehcache.xml @@ -0,0 +1,59 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/exomiser-spring-boot-autoconfigure/src/test/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfigurationTest.java b/exomiser-spring-boot-autoconfigure/src/test/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfigurationTest.java new file mode 100644 index 000000000..6bda1e6c0 --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/test/java/org/monarchinitiative/exomiser/autoconfigure/ExomiserAutoConfigurationTest.java @@ -0,0 +1,445 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.autoconfigure; + +import com.google.common.collect.ImmutableList; +import com.zaxxer.hikari.HikariConfig; +import de.charite.compbio.jannovar.data.JannovarData; +import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import org.junit.After; +import org.junit.Test; +import org.mockito.Mockito; +import org.monarchinitiative.exomiser.core.genome.dao.ErrorThrowingTabixDataSource; +import org.monarchinitiative.exomiser.core.genome.dao.TabixDataSource; +import org.monarchinitiative.exomiser.core.prioritisers.util.DataMatrix; +import org.springframework.boot.test.util.EnvironmentTestUtils; +import org.springframework.cache.CacheManager; +import org.springframework.cache.concurrent.ConcurrentMapCacheManager; +import org.springframework.context.annotation.AnnotationConfigApplicationContext; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; + +import javax.sql.DataSource; +import java.nio.file.Path; +import java.nio.file.Paths; + +import static org.hamcrest.CoreMatchers.*; +import static org.hamcrest.core.IsEqual.equalTo; +import static org.junit.Assert.assertThat; + +/** + * @author Jules Jacobsen + */ +public class ExomiserAutoConfigurationTest { + + private AnnotationConfigApplicationContext context; + + private static final Path TEST_DATA = Paths.get("src/test/resources/data"); + private static final String TEST_DATA_ENV = "exomiser.data-directory=" + TEST_DATA; + + @After + public void tearDown() { + if (this.context != null) { + this.context.close(); + } + } + + private void load(Class config, String... environment) { + AnnotationConfigApplicationContext applicationContext = new AnnotationConfigApplicationContext(); + EnvironmentTestUtils.addEnvironment(applicationContext, environment); + applicationContext.register(config); + applicationContext.register(ExomiserAutoConfiguration.class); + applicationContext.refresh(); + this.context = applicationContext; + } + + @Test + public void testDataPath() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + Path exomiserDataDirectory = (Path) this.context.getBean("exomiserDataDirectory"); + assertThat(exomiserDataDirectory.getFileName(), equalTo(Paths.get("data"))); + } + + @Test + public void testWorkingDirectoryPathDefaultIsTempDir() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + Path workingDirectory = (Path) this.context.getBean("exomiserWorkingDirectory"); + assertThat(workingDirectory.getFileName(), equalTo(Paths.get("exomiser-data"))); + assertThat(workingDirectory.getParent(), equalTo(Paths.get(System.getProperty("java.io.tmpdir")))); + } + + @Test + public void testCanSpecifyWorkingDirectory() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.working-directory=" + TEST_DATA + "/wibble"); + Path workingDirectory = (Path) this.context.getBean("exomiserWorkingDirectory"); + assertThat(workingDirectory.getFileName(), equalTo(Paths.get("wibble"))); + assertThat(workingDirectory.getParent(), equalTo(TEST_DATA)); + } + + @Test + public void transcriptFilePathIsDefinedRelativeToDataPath() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.transcript-data-file-name=ucsc.ser"); + Path ucscFilePath = (Path) this.context.getBean("transcriptFilePath"); + assertThat(ucscFilePath.getFileName(), equalTo(Paths.get("ucsc.ser"))); + assertThat(ucscFilePath.getParent(), equalTo(TEST_DATA)); + } + + /** + * We're testing against empty placeholder files here so we're expecting an error + */ + @Test(expected = RuntimeException.class) + public void testJannovarData() { + load(NoJannovarOverrideConfiguration.class, TEST_DATA_ENV, "exomiser.transcript-data-file-name=ucsc.ser"); + JannovarData jannovarData = (JannovarData) this.context.getBean("jannovarData"); + } + + @Test + public void testJannovarDataCanBeOverridden() { + load(BeanOverrideConfiguration.class, TEST_DATA_ENV, "exomiser.transcriptDataFileName=hg19_ucsc.ser"); + JannovarData jannovarData = (JannovarData) this.context.getBean("jannovarData"); + assertThat(jannovarData, not(nullValue())); + } + + @Test(expected = RuntimeException.class) + public void loadTabixFileThrowsRuntimeExceptionWhenFileNotFound() { + String testTabixFilePath = TEST_DATA.resolve("wibble.tsv.gz").toAbsolutePath().toString(); + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.caddSnvPath=" + testTabixFilePath); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("caddSnvTabixDataSource"); + } + + @Test + public void loadCaddSnvTabixFromPlaceholderWhenNotDefined() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("caddSnvTabixDataSource"); + assertThat(tabixDataSource, instanceOf(ErrorThrowingTabixDataSource.class)); + } + + @Test + public void loadCaddSnvTabixFileFromFullPathWhenDefined() { + String testTabixFilePath = TEST_DATA.resolve("whole_genome_SNVs.tsv.gz").toAbsolutePath().toString(); + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.caddSnvPath=" + testTabixFilePath); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("caddSnvTabixDataSource"); + assertThat(tabixDataSource.getSource(), equalTo(testTabixFilePath)); + } + + @Test + public void loadCaddIndelTabixFromPlaceholderWhenNotDefined() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("caddInDelTabixDataSource"); + assertThat(tabixDataSource, instanceOf(ErrorThrowingTabixDataSource.class)); + } + + @Test + public void loadCaddIndelTabixFileFromFullPathWhenDefined() { + String testTabixFilePath = TEST_DATA.resolve("InDels.tsv.gz").toAbsolutePath().toString(); + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.caddInDelPath=" + testTabixFilePath); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("caddInDelTabixDataSource"); + assertThat(tabixDataSource.getSource(), equalTo(testTabixFilePath)); + } + + @Test + public void loadRemmTabixFromPlaceholderWhenNotDefined() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("remmTabixDataSource"); + assertThat(tabixDataSource, instanceOf(ErrorThrowingTabixDataSource.class)); + } + + @Test + public void loadRemmTabixFileFromFullPathWhenDefined() { + String testTabixFilePath = TEST_DATA.resolve("remmData.tsv.gz").toAbsolutePath().toString(); + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.remmPath=" + testTabixFilePath); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("remmTabixDataSource"); + assertThat(tabixDataSource.getSource(), equalTo(testTabixFilePath)); + } + + @Test + public void loadLocalFrequencyTabixFromPlaceholderWhenNotDefined() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("localFrequencyTabixDataSource"); + assertThat(tabixDataSource, instanceOf(ErrorThrowingTabixDataSource.class)); + } + + @Test + public void loadLocalFrequencyTabixFileFromFullPathWhenDefined() { + String testTabixFilePath = TEST_DATA.resolve("placeholder.tsv.gz").toAbsolutePath().toString(); + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.local-frequency-path=" + testTabixFilePath); + TabixDataSource tabixDataSource = (TabixDataSource) context.getBean("localFrequencyTabixDataSource"); + assertThat(tabixDataSource.getSource(), equalTo(testTabixFilePath)); + } + + @Test + public void phenixDirectoryDefaultNameIsDefinedRelativeToDataPath() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + Path phenixDataDirectory = (Path) this.context.getBean("phenixDataDirectory"); + assertThat(phenixDataDirectory.getFileName(), equalTo(Paths.get("phenix"))); + assertThat(phenixDataDirectory.getParent(), equalTo(TEST_DATA)); + } + + @Test + public void phenixDirectoryIsDefinedRelativeToDataPath() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.phenixDataDir=wibble"); + Path phenixDataDirectory = (Path) this.context.getBean("phenixDataDirectory"); + assertThat(phenixDataDirectory.getFileName(), equalTo(Paths.get("wibble"))); + assertThat(phenixDataDirectory.getParent(), equalTo(TEST_DATA)); + } + + + @Test + public void hpoFileDefaultIsDefinedRelativeToPhenixPath() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + Path path = (Path) this.context.getBean("hpoOboFilePath"); + assertThat(path.getFileName(), equalTo(Paths.get("hp.obo"))); + assertThat(path.getParent(), equalTo((Path) this.context.getBean("phenixDataDirectory"))); + } + + @Test + public void hpoFileIsDefinedRelativeToPhenixPath() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.hpoFileName=wibble"); + Path path = (Path) this.context.getBean("hpoOboFilePath"); + assertThat(path.getFileName(), equalTo(Paths.get("wibble"))); + assertThat(path.getParent(), equalTo((Path) this.context.getBean("phenixDataDirectory"))); + } + + @Test + public void hpoFileBeanCanBeOverridden() { + load(BeanOverrideConfiguration.class, TEST_DATA_ENV, "exomiser.hpoFileName=wibble"); + Path path = (Path) this.context.getBean("hpoOboFilePath"); + assertThat(path.getFileName(), equalTo(Paths.get("hpo.obo"))); + assertThat(path.getParent(), equalTo((Paths.get("/another/data/dir")))); + } + + @Test + public void hpoAnnotationFileDefaultIsDefinedRelativeToPhenixPath() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + Path path = (Path) this.context.getBean("hpoAnnotationFilePath"); + assertThat(path.getFileName(), equalTo(Paths.get("ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt"))); + assertThat(path.getParent(), equalTo((Path) this.context.getBean("phenixDataDirectory"))); + } + + @Test + public void hpoAnnotationFileIsDefinedRelativeToDataPath() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.hpoAnnotationFile=wibble"); + Path path = (Path) this.context.getBean("hpoAnnotationFilePath"); + assertThat(path.getFileName(), equalTo(Paths.get("wibble"))); + assertThat(path.getParent(), equalTo((Path) this.context.getBean("phenixDataDirectory"))); + } + + @Test + public void hpoAnnotationFileBeanCanBeOverridden() { + load(BeanOverrideConfiguration.class, TEST_DATA_ENV, "exomiser.hpoAnnotationFile=wibble"); + Path path = (Path) this.context.getBean("hpoAnnotationFilePath"); + assertThat(path.getFileName(), equalTo(Paths.get("hpo.annotations"))); + assertThat(path.getParent(), equalTo((Paths.get("/another/data/dir")))); + } + + @Test(expected = Exception.class) + public void randomWalkMatrixDefault() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + DataMatrix dataMatrix = (DataMatrix) context.getBean("randomWalkMatrix"); + } + + @Test + public void randomWalkMatrixCanBeOverriden() { + load(BeanOverrideConfiguration.class, TEST_DATA_ENV, "exomiser.randomWalkFileName=wibble", "exomiser.randomWalkIndexFileName=wibbleIndex"); + DataMatrix dataMatrix = (DataMatrix) context.getBean("randomWalkMatrix"); + assertThat(dataMatrix, not(nullValue())); + } + + @Test + public void exomiserH2DefaultConfig() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + HikariConfig hikariConfig = (HikariConfig) context.getBean("h2Config"); + assertThat(hikariConfig.getDriverClassName(), equalTo("org.h2.Driver")); + assertThat(hikariConfig.getMaximumPoolSize(), equalTo(3)); + assertThat(hikariConfig.getUsername(), equalTo("sa")); + assertThat(hikariConfig.getPassword(), equalTo("")); + assertThat(hikariConfig.getJdbcUrl(), startsWith("jdbc:h2:file:"+ TEST_DATA.toAbsolutePath()+"/exomiser;")); + } + + @Test + public void exomiserH2ConfigUserDefinedH2PathNoUrlDefined() { + load(EmptyConfiguration.class, TEST_DATA_ENV, + "exomiser.h2.directory=wibble", + "exomiser.h2.user=wibble", + "exomiser.h2.password=wibble", + "exomiser.h2.max-connections=999"); + + HikariConfig hikariConfig = (HikariConfig) context.getBean("h2Config"); + assertThat(hikariConfig.getDriverClassName(), equalTo("org.h2.Driver")); + assertThat(hikariConfig.getMaximumPoolSize(), equalTo(999)); + assertThat(hikariConfig.getUsername(), equalTo("wibble")); + assertThat(hikariConfig.getPassword(), equalTo("wibble")); + assertThat(hikariConfig.getJdbcUrl(), startsWith("jdbc:h2:file:wibble/exomiser;")); + } + + @Test + public void exomiserH2ConfigUserDefinedH2PathUrlDefined() { + load(EmptyConfiguration.class, TEST_DATA_ENV, + "exomiser.h2.directory=wibble", + "exomiser.h2.user=wibble", + "exomiser.h2.password=wibble", + "exomiser.h2.url=jdbc:h2:mem:exomiser", + "exomiser.h2.max-connections=999"); + + HikariConfig hikariConfig = (HikariConfig) context.getBean("h2Config"); + assertThat(hikariConfig.getDriverClassName(), equalTo("org.h2.Driver")); + assertThat(hikariConfig.getMaximumPoolSize(), equalTo(999)); + assertThat(hikariConfig.getUsername(), equalTo("wibble")); + assertThat(hikariConfig.getPassword(), equalTo("wibble")); + assertThat(hikariConfig.getJdbcUrl(), equalTo("jdbc:h2:mem:exomiser")); + } + + @Test + public void exomiserH2ConfigCanBeOveridden() { + load(H2OverrideConfiguration.class, TEST_DATA_ENV); + HikariConfig hikariConfig = (HikariConfig) context.getBean("h2Config"); + assertThat(hikariConfig.getDriverClassName(), equalTo("org.h2.Driver")); + assertThat(hikariConfig.getMaximumPoolSize(), equalTo(3)); + assertThat(hikariConfig.getJdbcUrl(), startsWith("jdbc:h2:mem:exomiser")); + } + + @Test + public void dataSource() throws Exception { + load(H2OverrideConfiguration.class, TEST_DATA_ENV); + DataSource dataSource = (DataSource) context.getBean("dataSource"); + assertThat(dataSource, not(nullValue())); + assertThat(dataSource.getConnection().isValid(1), is(true)); + } + + @Test + public void cachingDisabledByDefault() { + load(EmptyConfiguration.class, TEST_DATA_ENV); + CacheManager cache = context.getBean(CacheManager.class); + assertThat(cache.getCacheNames().isEmpty(), is(true)); + } + + @Test(expected = RuntimeException.class) + public void cachingThrowsExceptionWhenNameNotRecognised() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.cache=wibble"); + } + + @Test + public void cachingCanBeDisabledExplicitly() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.cache=none"); + CacheManager cache = context.getBean(CacheManager.class); + assertThat(cache.getCacheNames().isEmpty(), is(true)); + } + + @Test + public void cachingInMemCanBeDefined() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.cache=mem"); + CacheManager cache = context.getBean(CacheManager.class); + assertThat(cache.getCacheNames(), hasItems("pathogenicity", "frequency", "diseaseHp", "diseases","hpo", "mpo", "zpo", "cadd", "remm")); + } + + @Test + public void cachingEhCacheCanBeDefined() { + load(EmptyConfiguration.class, TEST_DATA_ENV, "exomiser.cache=ehcache"); + CacheManager cache = context.getBean(CacheManager.class); + assertThat(cache.getCacheNames(), hasItems("pathogenicity", "frequency", "diseaseHp", "diseases","hpo", "mpo", "zpo", "cadd", "remm")); + } + + @Test + public void cachingCanBeOverridden() { + load(BeanOverrideConfiguration.class, TEST_DATA_ENV, "exomiser.cache=ehcache"); + CacheManager cache = context.getBean(CacheManager.class); + assertThat(cache.getCacheNames(), hasItems("wibble")); + } + + @Configuration + static class NoJannovarOverrideConfiguration { + /* + * Mock this otherwise we'll try connecting to a non-existent database. + */ + @Bean + public DataSource dataSource() { + return Mockito.mock(DataSource.class); + } + } + + @Configuration + static class EmptyConfiguration { + + /* + * Mock this otherwise we'll try connecting to a non-existent database. + */ + @Bean + public DataSource dataSource() { + return Mockito.mock(DataSource.class); + } + + @Bean + public JannovarData jannovarData() { + return new JannovarData(HG19RefDictBuilder.build(), ImmutableList.of()); + } + + } + + @Configuration + static class BeanOverrideConfiguration extends EmptyConfiguration { + + @Bean + public JannovarData jannovarData() { + return new JannovarData(HG19RefDictBuilder.build(), ImmutableList.of()); + } + + @Bean + public Path hpoOboFilePath() { + return Paths.get("/another/data/dir/hpo.obo"); + } + + @Bean + public Path hpoAnnotationFilePath() { + return Paths.get("/another/data/dir/hpo.annotations"); + } + + @Bean + public DataMatrix randomWalkMatrix() { + return Mockito.mock(DataMatrix.class); + } + + @Bean + public CacheManager cacheManager() { + return new ConcurrentMapCacheManager("wibble"); + } + + } + + @Configuration + static class H2OverrideConfiguration { + + @Bean + public JannovarData jannovarData() { + return new JannovarData(HG19RefDictBuilder.build(), ImmutableList.of()); + } + + @Bean + public HikariConfig h2Config() { + HikariConfig config = new HikariConfig(); + config.setDriverClassName("org.h2.Driver"); + config.setJdbcUrl("jdbc:h2:mem:exomiser"); + config.setMaximumPoolSize(3); + config.setPoolName("exomiser-H2-mem"); + return config; + } + } + +} \ No newline at end of file diff --git a/exomiser-cli/src/main/resources/distribution/data/InDels.tsv.gz b/exomiser-spring-boot-autoconfigure/src/test/resources/data/InDels.tsv.gz similarity index 100% rename from exomiser-cli/src/main/resources/distribution/data/InDels.tsv.gz rename to exomiser-spring-boot-autoconfigure/src/test/resources/data/InDels.tsv.gz diff --git a/exomiser-cli/src/main/resources/distribution/data/InDels.tsv.gz.tbi b/exomiser-spring-boot-autoconfigure/src/test/resources/data/InDels.tsv.gz.tbi similarity index 100% rename from exomiser-cli/src/main/resources/distribution/data/InDels.tsv.gz.tbi rename to exomiser-spring-boot-autoconfigure/src/test/resources/data/InDels.tsv.gz.tbi diff --git a/exomiser-cli/src/main/resources/distribution/data/remmData.tsv.gz b/exomiser-spring-boot-autoconfigure/src/test/resources/data/placeholder.tsv.gz similarity index 100% rename from exomiser-cli/src/main/resources/distribution/data/remmData.tsv.gz rename to exomiser-spring-boot-autoconfigure/src/test/resources/data/placeholder.tsv.gz diff --git a/exomiser-cli/src/main/resources/distribution/data/remmData.tsv.gz.tbi b/exomiser-spring-boot-autoconfigure/src/test/resources/data/placeholder.tsv.gz.tbi similarity index 100% rename from exomiser-cli/src/main/resources/distribution/data/remmData.tsv.gz.tbi rename to exomiser-spring-boot-autoconfigure/src/test/resources/data/placeholder.tsv.gz.tbi diff --git a/exomiser-cli/src/main/resources/distribution/data/whole_genome_SNVs.tsv.gz b/exomiser-spring-boot-autoconfigure/src/test/resources/data/remmData.tsv.gz similarity index 100% rename from exomiser-cli/src/main/resources/distribution/data/whole_genome_SNVs.tsv.gz rename to exomiser-spring-boot-autoconfigure/src/test/resources/data/remmData.tsv.gz diff --git a/exomiser-cli/src/main/resources/distribution/data/whole_genome_SNVs.tsv.gz.tbi b/exomiser-spring-boot-autoconfigure/src/test/resources/data/remmData.tsv.gz.tbi similarity index 100% rename from exomiser-cli/src/main/resources/distribution/data/whole_genome_SNVs.tsv.gz.tbi rename to exomiser-spring-boot-autoconfigure/src/test/resources/data/remmData.tsv.gz.tbi diff --git a/exomiser-spring-boot-autoconfigure/src/test/resources/data/rw_string_9_05_id2index.gz b/exomiser-spring-boot-autoconfigure/src/test/resources/data/rw_string_9_05_id2index.gz new file mode 100644 index 000000000..e69de29bb diff --git a/exomiser-spring-boot-autoconfigure/src/test/resources/data/whole_genome_SNVs.tsv.gz b/exomiser-spring-boot-autoconfigure/src/test/resources/data/whole_genome_SNVs.tsv.gz new file mode 100644 index 000000000..e69de29bb diff --git a/exomiser-spring-boot-autoconfigure/src/test/resources/data/whole_genome_SNVs.tsv.gz.tbi b/exomiser-spring-boot-autoconfigure/src/test/resources/data/whole_genome_SNVs.tsv.gz.tbi new file mode 100644 index 000000000..e69de29bb diff --git a/exomiser-spring-boot-autoconfigure/src/test/resources/ehcache.xml b/exomiser-spring-boot-autoconfigure/src/test/resources/ehcache.xml new file mode 100644 index 000000000..051730468 --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/test/resources/ehcache.xml @@ -0,0 +1,61 @@ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/exomiser-spring-boot-autoconfigure/src/test/resources/logback.groovy b/exomiser-spring-boot-autoconfigure/src/test/resources/logback.groovy new file mode 100644 index 000000000..c18d4836c --- /dev/null +++ b/exomiser-spring-boot-autoconfigure/src/test/resources/logback.groovy @@ -0,0 +1,29 @@ +/* + * The Exomiser - A tool to annotate and prioritize variants + * + * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +appender("CONSOLE", ConsoleAppender) { + encoder(PatternLayoutEncoder) { + pattern = "%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger - %msg%n" + } +} + +logger("org.monarchinitiative.exomiser", INFO) +logger("org.thymeleaf", ERROR) + +root(INFO, ["CONSOLE"]) \ No newline at end of file diff --git a/exomiser-spring-boot-starter/.mvn/wrapper/maven-wrapper.jar b/exomiser-spring-boot-starter/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-spring-boot-starter/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-spring-boot-starter/.mvn/wrapper/maven-wrapper.properties b/exomiser-spring-boot-starter/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/exomiser-spring-boot-starter/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/exomiser-spring-boot-starter/mvnw b/exomiser-spring-boot-starter/mvnw new file mode 100644 index 000000000..5bf251c07 --- /dev/null +++ b/exomiser-spring-boot-starter/mvnw @@ -0,0 +1,225 @@ +#!/bin/sh +# ---------------------------------------------------------------------------- +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +# ---------------------------------------------------------------------------- + +# ---------------------------------------------------------------------------- +# Maven2 Start Up Batch script +# +# Required ENV vars: +# ------------------ +# JAVA_HOME - location of a JDK home dir +# +# Optional ENV vars +# ----------------- +# M2_HOME - location of maven2's installed home dir +# MAVEN_OPTS - parameters passed to the Java VM when running Maven +# e.g. to debug Maven itself, use +# set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +# MAVEN_SKIP_RC - flag to disable loading of mavenrc files +# ---------------------------------------------------------------------------- + +if [ -z "$MAVEN_SKIP_RC" ] ; then + + if [ -f /etc/mavenrc ] ; then + . /etc/mavenrc + fi + + if [ -f "$HOME/.mavenrc" ] ; then + . "$HOME/.mavenrc" + fi + +fi + +# OS specific support. $var _must_ be set to either true or false. +cygwin=false; +darwin=false; +mingw=false +case "`uname`" in + CYGWIN*) cygwin=true ;; + MINGW*) mingw=true;; + Darwin*) darwin=true + # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home + # See https://developer.apple.com/library/mac/qa/qa1170/_index.html + if [ -z "$JAVA_HOME" ]; then + if [ -x "/usr/libexec/java_home" ]; then + export JAVA_HOME="`/usr/libexec/java_home`" + else + export JAVA_HOME="/Library/Java/Home" + fi + fi + ;; +esac + +if [ -z "$JAVA_HOME" ] ; then + if [ -r /etc/gentoo-release ] ; then + JAVA_HOME=`java-config --jre-home` + fi +fi + +if [ -z "$M2_HOME" ] ; then + ## resolve links - $0 may be a link to maven's home + PRG="$0" + + # need this for relative symlinks + while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG="`dirname "$PRG"`/$link" + fi + done + + saveddir=`pwd` + + M2_HOME=`dirname "$PRG"`/.. + + # make it fully qualified + M2_HOME=`cd "$M2_HOME" && pwd` + + cd "$saveddir" + # echo Using m2 at $M2_HOME +fi + +# For Cygwin, ensure paths are in UNIX format before anything is touched +if $cygwin ; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --unix "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --unix "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --unix "$CLASSPATH"` +fi + +# For Migwn, ensure paths are in UNIX format before anything is touched +if $mingw ; then + [ -n "$M2_HOME" ] && + M2_HOME="`(cd "$M2_HOME"; pwd)`" + [ -n "$JAVA_HOME" ] && + JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`" + # TODO classpath? +fi + +if [ -z "$JAVA_HOME" ]; then + javaExecutable="`which javac`" + if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then + # readlink(1) is not available as standard on Solaris 10. + readLink=`which readlink` + if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then + if $darwin ; then + javaHome="`dirname \"$javaExecutable\"`" + javaExecutable="`cd \"$javaHome\" && pwd -P`/javac" + else + javaExecutable="`readlink -f \"$javaExecutable\"`" + fi + javaHome="`dirname \"$javaExecutable\"`" + javaHome=`expr "$javaHome" : '\(.*\)/bin'` + JAVA_HOME="$javaHome" + export JAVA_HOME + fi + fi +fi + +if [ -z "$JAVACMD" ] ; then + if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + else + JAVACMD="`which java`" + fi +fi + +if [ ! -x "$JAVACMD" ] ; then + echo "Error: JAVA_HOME is not defined correctly." >&2 + echo " We cannot execute $JAVACMD" >&2 + exit 1 +fi + +if [ -z "$JAVA_HOME" ] ; then + echo "Warning: JAVA_HOME environment variable is not set." +fi + +CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher + +# traverses directory structure from process work directory to filesystem root +# first directory with .mvn subdirectory is considered project base directory +find_maven_basedir() { + + if [ -z "$1" ] + then + echo "Path not specified to find_maven_basedir" + return 1 + fi + + basedir="$1" + wdir="$1" + while [ "$wdir" != '/' ] ; do + if [ -d "$wdir"/.mvn ] ; then + basedir=$wdir + break + fi + # workaround for JBEAP-8937 (on Solaris 10/Sparc) + if [ -d "${wdir}" ]; then + wdir=`cd "$wdir/.."; pwd` + fi + # end of workaround + done + echo "${basedir}" +} + +# concatenates all lines of a file +concat_lines() { + if [ -f "$1" ]; then + echo "$(tr -s '\n' ' ' < "$1")" + fi +} + +BASE_DIR=`find_maven_basedir "$(pwd)"` +if [ -z "$BASE_DIR" ]; then + exit 1; +fi + +export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"} +echo $MAVEN_PROJECTBASEDIR +MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS" + +# For Cygwin, switch paths to Windows format before running java +if $cygwin; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --path --windows "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --windows "$CLASSPATH"` + [ -n "$MAVEN_PROJECTBASEDIR" ] && + MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"` +fi + +WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +exec "$JAVACMD" \ + $MAVEN_OPTS \ + -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \ + "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \ + ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@" diff --git a/exomiser-spring-boot-starter/mvnw.cmd b/exomiser-spring-boot-starter/mvnw.cmd new file mode 100644 index 000000000..019bd74d7 --- /dev/null +++ b/exomiser-spring-boot-starter/mvnw.cmd @@ -0,0 +1,143 @@ +@REM ---------------------------------------------------------------------------- +@REM Licensed to the Apache Software Foundation (ASF) under one +@REM or more contributor license agreements. See the NOTICE file +@REM distributed with this work for additional information +@REM regarding copyright ownership. The ASF licenses this file +@REM to you under the Apache License, Version 2.0 (the +@REM "License"); you may not use this file except in compliance +@REM with the License. You may obtain a copy of the License at +@REM +@REM http://www.apache.org/licenses/LICENSE-2.0 +@REM +@REM Unless required by applicable law or agreed to in writing, +@REM software distributed under the License is distributed on an +@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +@REM KIND, either express or implied. See the License for the +@REM specific language governing permissions and limitations +@REM under the License. +@REM ---------------------------------------------------------------------------- + +@REM ---------------------------------------------------------------------------- +@REM Maven2 Start Up Batch script +@REM +@REM Required ENV vars: +@REM JAVA_HOME - location of a JDK home dir +@REM +@REM Optional ENV vars +@REM M2_HOME - location of maven2's installed home dir +@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands +@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a key stroke before ending +@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven +@REM e.g. to debug Maven itself, use +@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files +@REM ---------------------------------------------------------------------------- + +@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on' +@echo off +@REM enable echoing my setting MAVEN_BATCH_ECHO to 'on' +@if "%MAVEN_BATCH_ECHO%" == "on" echo %MAVEN_BATCH_ECHO% + +@REM set %HOME% to equivalent of $HOME +if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%") + +@REM Execute a user defined script before this one +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre +@REM check for pre script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat" +if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd" +:skipRcPre + +@setlocal + +set ERROR_CODE=0 + +@REM To isolate internal variables from possible post scripts, we use another setlocal +@setlocal + +@REM ==== START VALIDATION ==== +if not "%JAVA_HOME%" == "" goto OkJHome + +echo. +echo Error: JAVA_HOME not found in your environment. >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +:OkJHome +if exist "%JAVA_HOME%\bin\java.exe" goto init + +echo. +echo Error: JAVA_HOME is set to an invalid directory. >&2 +echo JAVA_HOME = "%JAVA_HOME%" >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +@REM ==== END VALIDATION ==== + +:init + +@REM Find the project base dir, i.e. the directory that contains the folder ".mvn". +@REM Fallback to current working directory if not found. + +set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR% +IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir + +set EXEC_DIR=%CD% +set WDIR=%EXEC_DIR% +:findBaseDir +IF EXIST "%WDIR%"\.mvn goto baseDirFound +cd .. +IF "%WDIR%"=="%CD%" goto baseDirNotFound +set WDIR=%CD% +goto findBaseDir + +:baseDirFound +set MAVEN_PROJECTBASEDIR=%WDIR% +cd "%EXEC_DIR%" +goto endDetectBaseDir + +:baseDirNotFound +set MAVEN_PROJECTBASEDIR=%EXEC_DIR% +cd "%EXEC_DIR%" + +:endDetectBaseDir + +IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig + +@setlocal EnableExtensions EnableDelayedExpansion +for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a +@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS% + +:endReadAdditionalConfig + +SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe" + +set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar" +set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %* +if ERRORLEVEL 1 goto error +goto end + +:error +set ERROR_CODE=1 + +:end +@endlocal & set ERROR_CODE=%ERROR_CODE% + +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost +@REM check for post script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat" +if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd" +:skipRcPost + +@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on' +if "%MAVEN_BATCH_PAUSE%" == "on" pause + +if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE% + +exit /B %ERROR_CODE% diff --git a/exomiser-spring-boot-starter/pom.xml b/exomiser-spring-boot-starter/pom.xml new file mode 100644 index 000000000..d328b9a4c --- /dev/null +++ b/exomiser-spring-boot-starter/pom.xml @@ -0,0 +1,57 @@ + + + + + + 4.0.0 + + + org.monarchinitiative + exomiser + 8.0.0 + + + + exomiser-spring-boot-starter + jar + + + UTF-8 + + + + + org.springframework.boot + spring-boot-starter + + + org.monarchinitiative + exomiser-spring-boot-autoconfigure + ${project.version} + + + org.monarchinitiative + exomiser-core + ${project.version} + + + diff --git a/exomiser-spring-boot-starter/src/main/resources/META-INF/spring.provides b/exomiser-spring-boot-starter/src/main/resources/META-INF/spring.provides new file mode 100644 index 000000000..89f0a67cf --- /dev/null +++ b/exomiser-spring-boot-starter/src/main/resources/META-INF/spring.provides @@ -0,0 +1 @@ +provides: exomiser-core \ No newline at end of file diff --git a/exomiser-spring-boot-test/.mvn/wrapper/maven-wrapper.jar b/exomiser-spring-boot-test/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-spring-boot-test/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-spring-boot-test/.mvn/wrapper/maven-wrapper.properties b/exomiser-spring-boot-test/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/exomiser-spring-boot-test/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/exomiser-spring-boot-test/mvnw b/exomiser-spring-boot-test/mvnw new file mode 100644 index 000000000..5bf251c07 --- /dev/null +++ b/exomiser-spring-boot-test/mvnw @@ -0,0 +1,225 @@ +#!/bin/sh +# ---------------------------------------------------------------------------- +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +# ---------------------------------------------------------------------------- + +# ---------------------------------------------------------------------------- +# Maven2 Start Up Batch script +# +# Required ENV vars: +# ------------------ +# JAVA_HOME - location of a JDK home dir +# +# Optional ENV vars +# ----------------- +# M2_HOME - location of maven2's installed home dir +# MAVEN_OPTS - parameters passed to the Java VM when running Maven +# e.g. to debug Maven itself, use +# set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +# MAVEN_SKIP_RC - flag to disable loading of mavenrc files +# ---------------------------------------------------------------------------- + +if [ -z "$MAVEN_SKIP_RC" ] ; then + + if [ -f /etc/mavenrc ] ; then + . /etc/mavenrc + fi + + if [ -f "$HOME/.mavenrc" ] ; then + . "$HOME/.mavenrc" + fi + +fi + +# OS specific support. $var _must_ be set to either true or false. +cygwin=false; +darwin=false; +mingw=false +case "`uname`" in + CYGWIN*) cygwin=true ;; + MINGW*) mingw=true;; + Darwin*) darwin=true + # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home + # See https://developer.apple.com/library/mac/qa/qa1170/_index.html + if [ -z "$JAVA_HOME" ]; then + if [ -x "/usr/libexec/java_home" ]; then + export JAVA_HOME="`/usr/libexec/java_home`" + else + export JAVA_HOME="/Library/Java/Home" + fi + fi + ;; +esac + +if [ -z "$JAVA_HOME" ] ; then + if [ -r /etc/gentoo-release ] ; then + JAVA_HOME=`java-config --jre-home` + fi +fi + +if [ -z "$M2_HOME" ] ; then + ## resolve links - $0 may be a link to maven's home + PRG="$0" + + # need this for relative symlinks + while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG="`dirname "$PRG"`/$link" + fi + done + + saveddir=`pwd` + + M2_HOME=`dirname "$PRG"`/.. + + # make it fully qualified + M2_HOME=`cd "$M2_HOME" && pwd` + + cd "$saveddir" + # echo Using m2 at $M2_HOME +fi + +# For Cygwin, ensure paths are in UNIX format before anything is touched +if $cygwin ; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --unix "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --unix "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --unix "$CLASSPATH"` +fi + +# For Migwn, ensure paths are in UNIX format before anything is touched +if $mingw ; then + [ -n "$M2_HOME" ] && + M2_HOME="`(cd "$M2_HOME"; pwd)`" + [ -n "$JAVA_HOME" ] && + JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`" + # TODO classpath? +fi + +if [ -z "$JAVA_HOME" ]; then + javaExecutable="`which javac`" + if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then + # readlink(1) is not available as standard on Solaris 10. + readLink=`which readlink` + if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then + if $darwin ; then + javaHome="`dirname \"$javaExecutable\"`" + javaExecutable="`cd \"$javaHome\" && pwd -P`/javac" + else + javaExecutable="`readlink -f \"$javaExecutable\"`" + fi + javaHome="`dirname \"$javaExecutable\"`" + javaHome=`expr "$javaHome" : '\(.*\)/bin'` + JAVA_HOME="$javaHome" + export JAVA_HOME + fi + fi +fi + +if [ -z "$JAVACMD" ] ; then + if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + else + JAVACMD="`which java`" + fi +fi + +if [ ! -x "$JAVACMD" ] ; then + echo "Error: JAVA_HOME is not defined correctly." >&2 + echo " We cannot execute $JAVACMD" >&2 + exit 1 +fi + +if [ -z "$JAVA_HOME" ] ; then + echo "Warning: JAVA_HOME environment variable is not set." +fi + +CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher + +# traverses directory structure from process work directory to filesystem root +# first directory with .mvn subdirectory is considered project base directory +find_maven_basedir() { + + if [ -z "$1" ] + then + echo "Path not specified to find_maven_basedir" + return 1 + fi + + basedir="$1" + wdir="$1" + while [ "$wdir" != '/' ] ; do + if [ -d "$wdir"/.mvn ] ; then + basedir=$wdir + break + fi + # workaround for JBEAP-8937 (on Solaris 10/Sparc) + if [ -d "${wdir}" ]; then + wdir=`cd "$wdir/.."; pwd` + fi + # end of workaround + done + echo "${basedir}" +} + +# concatenates all lines of a file +concat_lines() { + if [ -f "$1" ]; then + echo "$(tr -s '\n' ' ' < "$1")" + fi +} + +BASE_DIR=`find_maven_basedir "$(pwd)"` +if [ -z "$BASE_DIR" ]; then + exit 1; +fi + +export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"} +echo $MAVEN_PROJECTBASEDIR +MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS" + +# For Cygwin, switch paths to Windows format before running java +if $cygwin; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --path --windows "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --windows "$CLASSPATH"` + [ -n "$MAVEN_PROJECTBASEDIR" ] && + MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"` +fi + +WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +exec "$JAVACMD" \ + $MAVEN_OPTS \ + -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \ + "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \ + ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@" diff --git a/exomiser-spring-boot-test/mvnw.cmd b/exomiser-spring-boot-test/mvnw.cmd new file mode 100644 index 000000000..019bd74d7 --- /dev/null +++ b/exomiser-spring-boot-test/mvnw.cmd @@ -0,0 +1,143 @@ +@REM ---------------------------------------------------------------------------- +@REM Licensed to the Apache Software Foundation (ASF) under one +@REM or more contributor license agreements. See the NOTICE file +@REM distributed with this work for additional information +@REM regarding copyright ownership. The ASF licenses this file +@REM to you under the Apache License, Version 2.0 (the +@REM "License"); you may not use this file except in compliance +@REM with the License. You may obtain a copy of the License at +@REM +@REM http://www.apache.org/licenses/LICENSE-2.0 +@REM +@REM Unless required by applicable law or agreed to in writing, +@REM software distributed under the License is distributed on an +@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +@REM KIND, either express or implied. See the License for the +@REM specific language governing permissions and limitations +@REM under the License. +@REM ---------------------------------------------------------------------------- + +@REM ---------------------------------------------------------------------------- +@REM Maven2 Start Up Batch script +@REM +@REM Required ENV vars: +@REM JAVA_HOME - location of a JDK home dir +@REM +@REM Optional ENV vars +@REM M2_HOME - location of maven2's installed home dir +@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands +@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a key stroke before ending +@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven +@REM e.g. to debug Maven itself, use +@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files +@REM ---------------------------------------------------------------------------- + +@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on' +@echo off +@REM enable echoing my setting MAVEN_BATCH_ECHO to 'on' +@if "%MAVEN_BATCH_ECHO%" == "on" echo %MAVEN_BATCH_ECHO% + +@REM set %HOME% to equivalent of $HOME +if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%") + +@REM Execute a user defined script before this one +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre +@REM check for pre script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat" +if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd" +:skipRcPre + +@setlocal + +set ERROR_CODE=0 + +@REM To isolate internal variables from possible post scripts, we use another setlocal +@setlocal + +@REM ==== START VALIDATION ==== +if not "%JAVA_HOME%" == "" goto OkJHome + +echo. +echo Error: JAVA_HOME not found in your environment. >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +:OkJHome +if exist "%JAVA_HOME%\bin\java.exe" goto init + +echo. +echo Error: JAVA_HOME is set to an invalid directory. >&2 +echo JAVA_HOME = "%JAVA_HOME%" >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +@REM ==== END VALIDATION ==== + +:init + +@REM Find the project base dir, i.e. the directory that contains the folder ".mvn". +@REM Fallback to current working directory if not found. + +set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR% +IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir + +set EXEC_DIR=%CD% +set WDIR=%EXEC_DIR% +:findBaseDir +IF EXIST "%WDIR%"\.mvn goto baseDirFound +cd .. +IF "%WDIR%"=="%CD%" goto baseDirNotFound +set WDIR=%CD% +goto findBaseDir + +:baseDirFound +set MAVEN_PROJECTBASEDIR=%WDIR% +cd "%EXEC_DIR%" +goto endDetectBaseDir + +:baseDirNotFound +set MAVEN_PROJECTBASEDIR=%EXEC_DIR% +cd "%EXEC_DIR%" + +:endDetectBaseDir + +IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig + +@setlocal EnableExtensions EnableDelayedExpansion +for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a +@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS% + +:endReadAdditionalConfig + +SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe" + +set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar" +set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %* +if ERRORLEVEL 1 goto error +goto end + +:error +set ERROR_CODE=1 + +:end +@endlocal & set ERROR_CODE=%ERROR_CODE% + +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost +@REM check for post script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat" +if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd" +:skipRcPost + +@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on' +if "%MAVEN_BATCH_PAUSE%" == "on" pause + +if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE% + +exit /B %ERROR_CODE% diff --git a/exomiser-spring-boot-test/pom.xml b/exomiser-spring-boot-test/pom.xml new file mode 100644 index 000000000..acb0be4da --- /dev/null +++ b/exomiser-spring-boot-test/pom.xml @@ -0,0 +1,28 @@ + + + + exomiser + org.monarchinitiative + 8.0.0 + + 4.0.0 + + exomiser-spring-boot-test + jar + + + + org.monarchinitiative + exomiser-core + ${parent.version} + + + org.mockito + mockito-core + + + + + \ No newline at end of file diff --git a/exomiser-spring-boot-test/src/main/java/org/monarchinitiative/exomiser/test/ExomiserStubDataConfig.java b/exomiser-spring-boot-test/src/main/java/org/monarchinitiative/exomiser/test/ExomiserStubDataConfig.java new file mode 100644 index 000000000..25753fca0 --- /dev/null +++ b/exomiser-spring-boot-test/src/main/java/org/monarchinitiative/exomiser/test/ExomiserStubDataConfig.java @@ -0,0 +1,89 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.test; + +import com.google.common.collect.ImmutableList; +import com.zaxxer.hikari.HikariConfig; +import de.charite.compbio.jannovar.data.JannovarData; +import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import htsjdk.tribble.readers.TabixReader; +import org.mockito.Mockito; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; + +/** + * Configuration to provide a stub classes for exomiser beans which require on-disk files to operate on. + * + * @author Jules Jacobsen + */ +@Configuration +public class ExomiserStubDataConfig { + + private static final Logger logger = LoggerFactory.getLogger(ExomiserStubDataConfig.class); + + @Bean + public HikariConfig h2Config() { + logger.info("Creating in memory H2 databasegit stash"); + HikariConfig config = new HikariConfig(); + config.setDriverClassName("org.h2.Driver"); + config.setJdbcUrl("jdbc:h2:mem:exomiser"); + config.setMaximumPoolSize(3); + config.setPoolName("exomiser-H2-mem"); + return config; + } + + @Bean + public JannovarData jannovarData() { + logger.info("Creating stub Jannovar data"); + return new JannovarData(HG19RefDictBuilder.build(), ImmutableList.of()); + } + + /** + * Provides a mock TabixReader in place of a TabixReader for a specific tabix file. + * @return a mock TabixReader + */ + @Bean + public TabixReader inDelTabixReader() { + logger.info("Mocking inDelTabixReader"); + return Mockito.mock(TabixReader.class); + } + + @Bean + public TabixReader snvTabixReader() { + logger.info("Mocking snvTabixReader"); + return Mockito.mock(TabixReader.class); + } + + @Bean + public TabixReader remmTabixReader() { + logger.info("Mocking remmTabixReader"); + return Mockito.mock(TabixReader.class); + } + + @Bean + public TabixReader localFrequencyTabixReader() { + logger.info("Mocking localFrequencyTabixReader"); + return Mockito.mock(TabixReader.class); + } + +} diff --git a/exomiser-spring-boot-test/src/test/java/org/monarchinitiative/exomiser/test/ExomiserStubDataConfigTest.java b/exomiser-spring-boot-test/src/test/java/org/monarchinitiative/exomiser/test/ExomiserStubDataConfigTest.java new file mode 100644 index 000000000..b38d95c94 --- /dev/null +++ b/exomiser-spring-boot-test/src/test/java/org/monarchinitiative/exomiser/test/ExomiserStubDataConfigTest.java @@ -0,0 +1,82 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.test; + +import de.charite.compbio.jannovar.data.JannovarData; +import htsjdk.tribble.readers.TabixReader; +import org.junit.Test; +import org.junit.runner.RunWith; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.test.context.ContextConfiguration; +import org.springframework.test.context.junit4.SpringRunner; + +import static org.hamcrest.CoreMatchers.equalTo; +import static org.hamcrest.CoreMatchers.instanceOf; +import static org.hamcrest.MatcherAssert.assertThat; + + +/** + * @author Jules Jacobsen + */ +@RunWith(SpringRunner.class) +@ContextConfiguration(classes = ExomiserStubDataConfig.class) +public class ExomiserStubDataConfigTest { + + @Autowired + private JannovarData jannovarData; + + @Autowired + private TabixReader inDelTabixReader; + + @Autowired + private TabixReader snvTabixReader; + + @Autowired + private TabixReader remmTabixReader; + + @Autowired + private TabixReader localFrequencyTabixReader; + + @Test + public void testJannovarData() { + assertThat(jannovarData.getChromosomes().size(), equalTo(25)); + } + + @Test + public void testInDelTabixReader() { + assertThat(inDelTabixReader, instanceOf(TabixReader.class)); + } + + @Test + public void testSnvTabixReader() { + assertThat(snvTabixReader, instanceOf(TabixReader.class)); + } + + @Test + public void testRemmTabixReader() { + assertThat(remmTabixReader, instanceOf(TabixReader.class)); + } + + @Test + public void testLocalFrequencyTabixReader() { + assertThat(localFrequencyTabixReader, instanceOf(TabixReader.class)); + } +} \ No newline at end of file diff --git a/exomiser-web/.mvn/wrapper/maven-wrapper.jar b/exomiser-web/.mvn/wrapper/maven-wrapper.jar new file mode 100644 index 000000000..9cc84ea9b Binary files /dev/null and b/exomiser-web/.mvn/wrapper/maven-wrapper.jar differ diff --git a/exomiser-web/.mvn/wrapper/maven-wrapper.properties b/exomiser-web/.mvn/wrapper/maven-wrapper.properties new file mode 100644 index 000000000..56bb0164e --- /dev/null +++ b/exomiser-web/.mvn/wrapper/maven-wrapper.properties @@ -0,0 +1 @@ +distributionUrl=https://repo1.maven.org/maven2/org/apache/maven/apache-maven/3.5.0/apache-maven-3.5.0-bin.zip \ No newline at end of file diff --git a/exomiser-web/README.md b/exomiser-web/README.md index f4d11c920..823fe9c72 100644 --- a/exomiser-web/README.md +++ b/exomiser-web/README.md @@ -3,38 +3,55 @@ The Exomiser - Web Code ##Setup -This is designed so that the database connection is provided to the application -by the container using JNDI. Here we're using Tomcat so you need to configure -Tomcat to connect to the database. In this case we're using the embedded version +This is a Spring Boot jar application meaning it runs using its own embedded Tomcat server. In this case we're using the embedded version of the H2 database as this performs well, in particular because the data is local to the machine. -To do this you will need to: - -1. Add H2.jar to the tomcat /lib directory -2. Add the following snippet to tomcat server.xml under the GlobalNamingResources section: - - ```xml - - ``` - -3. Add this snippet to the context.xml of the WAR file (this is already done, but if you change the name, you'll need to change this): - - ```xml - - ``` - -4. If you're using a pre-built war file change the path of dataDir in WEB-INF/classes/exomiser.properties to point to the location of these files on your webserver. - +Once built, to run the application will need to: + + 1. Have the exomiser-cli data directory somewhere visible to the machine you're running the server from. + 1. Copy the ${project.name}-${project.version}.jar to the machine you want to run it from. + 1. Make sure you have the ``application.properties`` file alongside the jar file. The defaults can be found in /src/main/resources/application.properties: + + ```properties + + #due to hardware and page timeout constraints + #we need to limit the maximum number of variants which will be analysed + maxVariants=100000 + #max genes especially hits the RAM usage for rendering a page so this is limited + maxGenes=200 + + exomiser.data-directory=/full/system/path/to/exomiser/data + ``` +##Running +Launch the application by intoning the incantation thus: + ```shell + java -jar -XX:+UseG1GC -Xms8G -Xmx8G ${project.name}-${project.version}.jar + ``` + The port will default to 8080, but it can be changed by specifying it either on the command line: + ```shell + java -jar -XX:+UseG1GC -Xms8G -Xmx8G ${project.name}-${project.version}.jar --server.port=8090 + ``` + or by adding it to the ``application.properties`` + ```properties + server.port=8090 + ``` + Further details can be found on the [Spring Boot Deployment](http://docs.spring.io/spring-boot/docs/current/reference/html/deployment.html) reference. + + Check all is well by visiting the submission page: + ``` + http://localhost:8080/exomiser/submit + ``` + +The submission page now contains a warning, shown by default, alerting users not to input sensitive clinical data. +If the instance *is* running in a clinically-compliant setting, the banner can be removed by setting the field +```exomiser.web.clinical-instance``` to ```true``` in the application.properties file: + +```properties +exomiser.web.clinical-instance=true +``` +or override this by launching the application using the command-line option + +```shell +--exomiser.web.clinical-instance=true +``` \ No newline at end of file diff --git a/exomiser-web/mvnw b/exomiser-web/mvnw new file mode 100644 index 000000000..5bf251c07 --- /dev/null +++ b/exomiser-web/mvnw @@ -0,0 +1,225 @@ +#!/bin/sh +# ---------------------------------------------------------------------------- +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, +# software distributed under the License is distributed on an +# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +# KIND, either express or implied. See the License for the +# specific language governing permissions and limitations +# under the License. +# ---------------------------------------------------------------------------- + +# ---------------------------------------------------------------------------- +# Maven2 Start Up Batch script +# +# Required ENV vars: +# ------------------ +# JAVA_HOME - location of a JDK home dir +# +# Optional ENV vars +# ----------------- +# M2_HOME - location of maven2's installed home dir +# MAVEN_OPTS - parameters passed to the Java VM when running Maven +# e.g. to debug Maven itself, use +# set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +# MAVEN_SKIP_RC - flag to disable loading of mavenrc files +# ---------------------------------------------------------------------------- + +if [ -z "$MAVEN_SKIP_RC" ] ; then + + if [ -f /etc/mavenrc ] ; then + . /etc/mavenrc + fi + + if [ -f "$HOME/.mavenrc" ] ; then + . "$HOME/.mavenrc" + fi + +fi + +# OS specific support. $var _must_ be set to either true or false. +cygwin=false; +darwin=false; +mingw=false +case "`uname`" in + CYGWIN*) cygwin=true ;; + MINGW*) mingw=true;; + Darwin*) darwin=true + # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home + # See https://developer.apple.com/library/mac/qa/qa1170/_index.html + if [ -z "$JAVA_HOME" ]; then + if [ -x "/usr/libexec/java_home" ]; then + export JAVA_HOME="`/usr/libexec/java_home`" + else + export JAVA_HOME="/Library/Java/Home" + fi + fi + ;; +esac + +if [ -z "$JAVA_HOME" ] ; then + if [ -r /etc/gentoo-release ] ; then + JAVA_HOME=`java-config --jre-home` + fi +fi + +if [ -z "$M2_HOME" ] ; then + ## resolve links - $0 may be a link to maven's home + PRG="$0" + + # need this for relative symlinks + while [ -h "$PRG" ] ; do + ls=`ls -ld "$PRG"` + link=`expr "$ls" : '.*-> \(.*\)$'` + if expr "$link" : '/.*' > /dev/null; then + PRG="$link" + else + PRG="`dirname "$PRG"`/$link" + fi + done + + saveddir=`pwd` + + M2_HOME=`dirname "$PRG"`/.. + + # make it fully qualified + M2_HOME=`cd "$M2_HOME" && pwd` + + cd "$saveddir" + # echo Using m2 at $M2_HOME +fi + +# For Cygwin, ensure paths are in UNIX format before anything is touched +if $cygwin ; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --unix "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --unix "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --unix "$CLASSPATH"` +fi + +# For Migwn, ensure paths are in UNIX format before anything is touched +if $mingw ; then + [ -n "$M2_HOME" ] && + M2_HOME="`(cd "$M2_HOME"; pwd)`" + [ -n "$JAVA_HOME" ] && + JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`" + # TODO classpath? +fi + +if [ -z "$JAVA_HOME" ]; then + javaExecutable="`which javac`" + if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then + # readlink(1) is not available as standard on Solaris 10. + readLink=`which readlink` + if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then + if $darwin ; then + javaHome="`dirname \"$javaExecutable\"`" + javaExecutable="`cd \"$javaHome\" && pwd -P`/javac" + else + javaExecutable="`readlink -f \"$javaExecutable\"`" + fi + javaHome="`dirname \"$javaExecutable\"`" + javaHome=`expr "$javaHome" : '\(.*\)/bin'` + JAVA_HOME="$javaHome" + export JAVA_HOME + fi + fi +fi + +if [ -z "$JAVACMD" ] ; then + if [ -n "$JAVA_HOME" ] ; then + if [ -x "$JAVA_HOME/jre/sh/java" ] ; then + # IBM's JDK on AIX uses strange locations for the executables + JAVACMD="$JAVA_HOME/jre/sh/java" + else + JAVACMD="$JAVA_HOME/bin/java" + fi + else + JAVACMD="`which java`" + fi +fi + +if [ ! -x "$JAVACMD" ] ; then + echo "Error: JAVA_HOME is not defined correctly." >&2 + echo " We cannot execute $JAVACMD" >&2 + exit 1 +fi + +if [ -z "$JAVA_HOME" ] ; then + echo "Warning: JAVA_HOME environment variable is not set." +fi + +CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher + +# traverses directory structure from process work directory to filesystem root +# first directory with .mvn subdirectory is considered project base directory +find_maven_basedir() { + + if [ -z "$1" ] + then + echo "Path not specified to find_maven_basedir" + return 1 + fi + + basedir="$1" + wdir="$1" + while [ "$wdir" != '/' ] ; do + if [ -d "$wdir"/.mvn ] ; then + basedir=$wdir + break + fi + # workaround for JBEAP-8937 (on Solaris 10/Sparc) + if [ -d "${wdir}" ]; then + wdir=`cd "$wdir/.."; pwd` + fi + # end of workaround + done + echo "${basedir}" +} + +# concatenates all lines of a file +concat_lines() { + if [ -f "$1" ]; then + echo "$(tr -s '\n' ' ' < "$1")" + fi +} + +BASE_DIR=`find_maven_basedir "$(pwd)"` +if [ -z "$BASE_DIR" ]; then + exit 1; +fi + +export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"} +echo $MAVEN_PROJECTBASEDIR +MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS" + +# For Cygwin, switch paths to Windows format before running java +if $cygwin; then + [ -n "$M2_HOME" ] && + M2_HOME=`cygpath --path --windows "$M2_HOME"` + [ -n "$JAVA_HOME" ] && + JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"` + [ -n "$CLASSPATH" ] && + CLASSPATH=`cygpath --path --windows "$CLASSPATH"` + [ -n "$MAVEN_PROJECTBASEDIR" ] && + MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"` +fi + +WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +exec "$JAVACMD" \ + $MAVEN_OPTS \ + -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \ + "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \ + ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@" diff --git a/exomiser-web/mvnw.cmd b/exomiser-web/mvnw.cmd new file mode 100644 index 000000000..019bd74d7 --- /dev/null +++ b/exomiser-web/mvnw.cmd @@ -0,0 +1,143 @@ +@REM ---------------------------------------------------------------------------- +@REM Licensed to the Apache Software Foundation (ASF) under one +@REM or more contributor license agreements. See the NOTICE file +@REM distributed with this work for additional information +@REM regarding copyright ownership. The ASF licenses this file +@REM to you under the Apache License, Version 2.0 (the +@REM "License"); you may not use this file except in compliance +@REM with the License. You may obtain a copy of the License at +@REM +@REM http://www.apache.org/licenses/LICENSE-2.0 +@REM +@REM Unless required by applicable law or agreed to in writing, +@REM software distributed under the License is distributed on an +@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY +@REM KIND, either express or implied. See the License for the +@REM specific language governing permissions and limitations +@REM under the License. +@REM ---------------------------------------------------------------------------- + +@REM ---------------------------------------------------------------------------- +@REM Maven2 Start Up Batch script +@REM +@REM Required ENV vars: +@REM JAVA_HOME - location of a JDK home dir +@REM +@REM Optional ENV vars +@REM M2_HOME - location of maven2's installed home dir +@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands +@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a key stroke before ending +@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven +@REM e.g. to debug Maven itself, use +@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000 +@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files +@REM ---------------------------------------------------------------------------- + +@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on' +@echo off +@REM enable echoing my setting MAVEN_BATCH_ECHO to 'on' +@if "%MAVEN_BATCH_ECHO%" == "on" echo %MAVEN_BATCH_ECHO% + +@REM set %HOME% to equivalent of $HOME +if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%") + +@REM Execute a user defined script before this one +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre +@REM check for pre script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat" +if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd" +:skipRcPre + +@setlocal + +set ERROR_CODE=0 + +@REM To isolate internal variables from possible post scripts, we use another setlocal +@setlocal + +@REM ==== START VALIDATION ==== +if not "%JAVA_HOME%" == "" goto OkJHome + +echo. +echo Error: JAVA_HOME not found in your environment. >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +:OkJHome +if exist "%JAVA_HOME%\bin\java.exe" goto init + +echo. +echo Error: JAVA_HOME is set to an invalid directory. >&2 +echo JAVA_HOME = "%JAVA_HOME%" >&2 +echo Please set the JAVA_HOME variable in your environment to match the >&2 +echo location of your Java installation. >&2 +echo. +goto error + +@REM ==== END VALIDATION ==== + +:init + +@REM Find the project base dir, i.e. the directory that contains the folder ".mvn". +@REM Fallback to current working directory if not found. + +set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR% +IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir + +set EXEC_DIR=%CD% +set WDIR=%EXEC_DIR% +:findBaseDir +IF EXIST "%WDIR%"\.mvn goto baseDirFound +cd .. +IF "%WDIR%"=="%CD%" goto baseDirNotFound +set WDIR=%CD% +goto findBaseDir + +:baseDirFound +set MAVEN_PROJECTBASEDIR=%WDIR% +cd "%EXEC_DIR%" +goto endDetectBaseDir + +:baseDirNotFound +set MAVEN_PROJECTBASEDIR=%EXEC_DIR% +cd "%EXEC_DIR%" + +:endDetectBaseDir + +IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig + +@setlocal EnableExtensions EnableDelayedExpansion +for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a +@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS% + +:endReadAdditionalConfig + +SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe" + +set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar" +set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain + +%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %* +if ERRORLEVEL 1 goto error +goto end + +:error +set ERROR_CODE=1 + +:end +@endlocal & set ERROR_CODE=%ERROR_CODE% + +if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost +@REM check for post script, once with legacy .bat ending and once with .cmd ending +if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat" +if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd" +:skipRcPost + +@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on' +if "%MAVEN_BATCH_PAUSE%" == "on" pause + +if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE% + +exit /B %ERROR_CODE% diff --git a/exomiser-web/pom.xml b/exomiser-web/pom.xml index 9a93c76ed..02cd34bd0 100644 --- a/exomiser-web/pom.xml +++ b/exomiser-web/pom.xml @@ -23,20 +23,21 @@ 4.0.0 exomiser-web - war + jar exomiser-web - Exomiser - de.charite.compbio - 7.2.3 + org.monarchinitiative + exomiser + 8.0.0 UTF-8 - C:/Users/jj8/Documents/exomiser-cli-4.0.0/data + ${project.build.testOutputDirectory}/data + ${data.dir} exomiser @@ -45,6 +46,7 @@ sanger /www/data/exomiser + /www/data/exomiser/data resources#software#exomiser @@ -52,60 +54,66 @@ - de.charite.compbio - exomiser-core - ${project.version} + org.monarchinitiative + exomiser-spring-boot-starter + ${project.parent.version} - - org.springframework - spring-web + org.monarchinitiative + exomiser-spring-boot-test + ${project.parent.version} + test + - org.springframework - spring-webmvc + org.springframework.boot + spring-boot-starter-thymeleaf - javax.servlet - javax.servlet-api - jar + org.springframework.boot + spring-boot-devtools + true - - - com.jayway.jsonpath - json-path-assert - test + org.springframework.boot + spring-boot-starter-actuator - - com.fasterxml.jackson.core - jackson-databind - jar + com.h2database + h2 com.fasterxml.jackson.core jackson-annotations jar + - com.fasterxml.jackson.datatype - jackson-datatype-jdk8 + org.webjars + bootstrap + 3.3.7-1 - - org.thymeleaf - thymeleaf - jar + org.webjars + jquery + 2.1.4 - org.thymeleaf - thymeleaf-spring4 - jar + org.webjars + chosen + 1.3.0 + + + + org.springframework.boot + spring-boot-starter-test + + - commons-fileupload - commons-fileupload + com.jayway.jsonpath + json-path-assert + test @@ -124,25 +132,17 @@ - org.apache.maven.plugins - maven-war-plugin - 2.1.1 - - false - ${warName} - - - - src/test/resources - - Pfeiffer.vcf - - resources - - - + org.springframework.boot + spring-boot-maven-plugin + ${spring-boot.version} + + + + repackage + build-info + + + diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/CacheConfig.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/CacheConfig.java deleted file mode 100644 index 85ad39b22..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/CacheConfig.java +++ /dev/null @@ -1,46 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.web.config; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.cache.CacheManager; -import org.springframework.cache.annotation.EnableCaching; -import org.springframework.cache.ehcache.EhCacheCacheManager; -import org.springframework.cache.ehcache.EhCacheManagerFactoryBean; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.Lazy; -import org.springframework.core.io.ClassPathResource; -import org.springframework.core.io.Resource; - -/** - * - * @author Jules Jacobsen - */ -@EnableCaching -@Configuration -public class CacheConfig { - - private static final Logger logger = LoggerFactory.getLogger(CacheConfig.class); - - @Bean - public CacheManager cacheManager() { - //see http://docs.spring.io/spring/docs/current/spring-framework-reference/html/cache.html for how this works - return new EhCacheCacheManager(ehCacheManager().getObject()); - } - - @Bean - public EhCacheManagerFactoryBean ehCacheManager() { - Resource ehCachConfig = new ClassPathResource("ehcache.xml"); - logger.info("Loading ehcache.xml from {}", ehCachConfig.getDescription()); - - EhCacheManagerFactoryBean ehCacheManagerFactoryBean = new EhCacheManagerFactoryBean(); - ehCacheManagerFactoryBean.setConfigLocation(ehCachConfig); - return ehCacheManagerFactoryBean; - } - -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/DaoConfig.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/DaoConfig.java deleted file mode 100644 index 8ac8437d0..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/DaoConfig.java +++ /dev/null @@ -1,54 +0,0 @@ -/* - * Copyright (C) 2014 jj8 - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ -package de.charite.compbio.exomiser.web.config; - -import de.charite.compbio.exomiser.web.dao.ExomiserDao; -import de.charite.compbio.exomiser.web.dao.JdbcExomiserDao; -import javax.naming.NamingException; -import javax.sql.DataSource; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.jndi.JndiTemplate; - -/** - * - * @author Jules Jacobsen - */ -@Configuration -public class DaoConfig { - - Logger logger = LoggerFactory.getLogger(DaoConfig.class); - - @Bean - public DataSource dataSource() { - JndiTemplate jndiTemplate = new JndiTemplate(); - DataSource dataSource = null; - try { - dataSource = jndiTemplate.lookup("java:comp/env/jdbc/exomiserDataSource", DataSource.class); - } catch (NamingException ex) { - logger.error(null, ex); - } - return dataSource; - } - - @Bean - public ExomiserDao exomiserDao() { - return new JdbcExomiserDao(); - } -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/ExomiserConfig.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/ExomiserConfig.java deleted file mode 100644 index 1f1b229e6..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/ExomiserConfig.java +++ /dev/null @@ -1,229 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.web.config; - -import de.charite.compbio.exomiser.core.analysis.AnalysisFactory; -import de.charite.compbio.exomiser.core.analysis.SettingsParser; -import de.charite.compbio.exomiser.core.dao.DefaultFrequencyDao; -import de.charite.compbio.exomiser.core.dao.DefaultPathogenicityDao; -import de.charite.compbio.exomiser.core.dao.FrequencyDao; -import de.charite.compbio.exomiser.core.dao.PathogenicityDao; -import de.charite.compbio.exomiser.core.factories.SampleDataFactory; -import de.charite.compbio.exomiser.core.factories.VariantDataServiceImpl; -import de.charite.compbio.exomiser.core.dao.DefaultDiseaseDao; -import de.charite.compbio.exomiser.core.dao.DiseaseDao; -import de.charite.compbio.exomiser.core.dao.HumanPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.MousePhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.dao.ZebraFishPhenotypeOntologyDao; -import de.charite.compbio.exomiser.core.factories.VariantAnnotator; -import de.charite.compbio.exomiser.core.factories.VariantDataService; -import de.charite.compbio.exomiser.core.factories.VariantFactory; -import de.charite.compbio.exomiser.core.prioritisers.PriorityFactoryImpl; -import de.charite.compbio.exomiser.core.prioritisers.util.DataMatrix; -import de.charite.compbio.exomiser.core.prioritisers.util.ModelService; -import de.charite.compbio.exomiser.core.prioritisers.util.ModelServiceImpl; -import de.charite.compbio.jannovar.data.JannovarData; -import de.charite.compbio.jannovar.data.JannovarDataSerializer; -import de.charite.compbio.jannovar.data.SerializationException; -import de.charite.compbio.exomiser.core.prioritisers.util.OntologyService; -import de.charite.compbio.exomiser.core.prioritisers.util.OntologyServiceImpl; -import de.charite.compbio.exomiser.core.prioritisers.util.PriorityService; - -import java.nio.file.Path; -import java.nio.file.Paths; - -import de.charite.compbio.jannovar.htsjdk.VariantContextAnnotator; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.Configuration; -import org.springframework.context.annotation.Import; -import org.springframework.context.annotation.Lazy; -import org.springframework.context.annotation.PropertySource; -import org.springframework.core.env.Environment; - -/** - * Provides configuration details from the settings.properties file located in - * the classpath. - * - * @author Jules Jacobsen - */ -@Configuration -@PropertySource({"classpath:exomiser.properties"}) -@Import(value = {CacheConfig.class, DaoConfig.class}) -public class ExomiserConfig { - - private static final Logger logger = LoggerFactory.getLogger(ExomiserConfig.class); - - @Autowired - private Environment env; - - @Bean - public SettingsParser settingsParser() { - return new SettingsParser(priorityFactory(), variantDataService()); - } - - @Bean - AnalysisFactory analysisFactory() { - return new AnalysisFactory(sampleDataFactory(), priorityFactory(), variantDataService()); - } - - /** - * This is critical for the application to run as it points to the data - * directory where all the required resources are found. Without this being - * correctly set, the application will fail. - * - * @return - */ - @Bean - public Path dataPath() { - Path dataPath = Paths.get(env.getProperty("dataDir")); - logger.info("Root data source directory set to: {}", dataPath.toAbsolutePath()); - - return dataPath; - } - - @Bean - public int maxVariants() { - int maxVariants = Integer.valueOf(env.getProperty("maxVariants")); - logger.info("Set max variants to {}", maxVariants); - return maxVariants; - } - - @Bean - public int maxGenes() { - int maxGenes = Integer.valueOf(env.getProperty("maxGenes")); - logger.info("Set max genes to {}", maxGenes); - return maxGenes; - } - - @Bean - public Path ucscFilePath() { - Path ucscFilePath = dataPath().resolve(env.getProperty("ucscFileName")); - logger.info("UCSC data file: {}", ucscFilePath.toAbsolutePath()); - return ucscFilePath; - } - - @Bean - public Path phenixDataDirectory() { - Path phenixDataDirectory = dataPath().resolve(env.getProperty("phenomizerDataDir")); - logger.info("phenixDataDirectory: {}", phenixDataDirectory.toAbsolutePath()); - return phenixDataDirectory; - } - - @Bean - public Path hpoOntologyFilePath() { - Path hpoOntologyFilePath = phenixDataDirectory().resolve(env.getProperty("hpoOntologyFile")); - logger.info("hpoOntologyFilePath: {}", hpoOntologyFilePath.toAbsolutePath()); - return hpoOntologyFilePath; - } - - @Bean - public Path hpoAnnotationFilePath() { - Path hpoAnnotationFilePath = phenixDataDirectory().resolve(env.getProperty("hpoAnnotationFile")); - logger.info("hpoAnnotationFilePath: {}", hpoAnnotationFilePath.toAbsolutePath()); - return hpoAnnotationFilePath; - } - - /** - * This takes a few seconds to de-serialise. - */ - @Bean - public JannovarData jannovarData() { - try { - return new JannovarDataSerializer(ucscFilePath().toString()).load(); - } catch (SerializationException e) { - throw new RuntimeException("Could not load Jannovar data from " + ucscFilePath(), e); - } - } - - @Lazy - @Bean - public VariantFactory variantFactory() { - JannovarData jannovarData = jannovarData(); - VariantContextAnnotator variantContextAnnotator = new VariantContextAnnotator(jannovarData.getRefDict(), jannovarData.getChromosomes()); - VariantAnnotator variantAnnotator = new VariantAnnotator(variantContextAnnotator); - return new VariantFactory(variantAnnotator); - } - - @Lazy - @Bean - public SampleDataFactory sampleDataFactory() { - return new SampleDataFactory(); - } - - /** - * This needs a lot of RAM and is slow to create from the randomWalkFile, so - * it's set as lazy use on the command-line. - * - */ - @Bean - @Lazy - public DataMatrix randomWalkMatrix() { - Path randomWalkFilePath = dataPath().resolve(env.getProperty("randomWalkFileName")); - Path randomWalkIndexFilePath = dataPath().resolve(env.getProperty("randomWalkIndexFileName")); - - return new DataMatrix(randomWalkFilePath.toString(), randomWalkIndexFilePath.toString(), true); - } - - @Bean - public PriorityFactoryImpl priorityFactory() { - return new PriorityFactoryImpl(); - } - - @Bean - PriorityService priorityService() { - return new PriorityService(); - } - - @Bean - ModelService modelService() { - return new ModelServiceImpl(); - } - - @Bean - public VariantDataService variantDataService() { - return new VariantDataServiceImpl(); - } - - //cacheable beans - @Bean - public FrequencyDao frequencyDao() { - return new DefaultFrequencyDao(); - } - - @Bean - public PathogenicityDao pathogenicityDao() { - return new DefaultPathogenicityDao(); - } - - @Bean - OntologyService ontologyService() { - return new OntologyServiceImpl(); - } - - @Bean - DiseaseDao diseaseDao() { - return new DefaultDiseaseDao(); - } - - @Bean - HumanPhenotypeOntologyDao humanPhenotypeOntologyDao() { - return new HumanPhenotypeOntologyDao(); - } - - @Bean - MousePhenotypeOntologyDao mousePhenotypeOntologyDao() { - return new MousePhenotypeOntologyDao(); - } - - @Bean - ZebraFishPhenotypeOntologyDao zebraFishPhenotypeOntologyDao() { - return new ZebraFishPhenotypeOntologyDao(); - } - -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/WebAppConfig.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/WebAppConfig.java deleted file mode 100644 index e01c99dcd..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/WebAppConfig.java +++ /dev/null @@ -1,76 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.web.config; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.context.annotation.Bean; -import org.springframework.context.annotation.ComponentScan; -import org.springframework.context.annotation.Configuration; -import org.springframework.web.multipart.MultipartResolver; -import org.springframework.web.multipart.commons.CommonsMultipartResolver; -import org.springframework.web.servlet.config.annotation.EnableWebMvc; -import org.springframework.web.servlet.config.annotation.ResourceHandlerRegistry; -import org.springframework.web.servlet.config.annotation.WebMvcConfigurerAdapter; -import org.thymeleaf.spring4.SpringTemplateEngine; -import org.thymeleaf.spring4.view.ThymeleafViewResolver; -import org.thymeleaf.templateresolver.ServletContextTemplateResolver; - -/** - * - * @author Jules Jacobsen - */ -@Configuration -@EnableWebMvc -@ComponentScan(basePackages = "de.charite.compbio.exomiser.web.controller") -public class WebAppConfig extends WebMvcConfigurerAdapter { - - Logger logger = LoggerFactory.getLogger(WebAppConfig.class); - - @Bean - MultipartResolver multipartResolver() { - CommonsMultipartResolver multipartResolver = new CommonsMultipartResolver(); - int maxUploadSizeInMb = 50 * 1024 * 1204; //50MB filesize - - multipartResolver.setMaxUploadSize(maxUploadSizeInMb); - multipartResolver.setDefaultEncoding("UTF-8"); - //do we need this? -// multipartResolver.setUploadTempDir(null); - return multipartResolver; - } - - @Override - public void addResourceHandlers(ResourceHandlerRegistry registry) { - registry.addResourceHandler("/resources/**").addResourceLocations("/resources/"); - } - - @Bean - public ThymeleafViewResolver thymeleafViewResolver() { - ThymeleafViewResolver viewResolver = new ThymeleafViewResolver(); - viewResolver.setTemplateEngine(templateEngine()); - viewResolver.setCharacterEncoding("UTF-8"); - return viewResolver; - } - - @Bean - public SpringTemplateEngine templateEngine() { - SpringTemplateEngine templateEngine = new SpringTemplateEngine(); - templateEngine.setTemplateResolver(templateResolver()); - return templateEngine; - } - - @Bean - public ServletContextTemplateResolver templateResolver() { - ServletContextTemplateResolver resolver = new ServletContextTemplateResolver(); - resolver.setPrefix("/WEB-INF/templates/"); - resolver.setSuffix(".html"); - resolver.setTemplateMode("HTML5"); - //setCacheable=false will enable easy development - just save the template and then refresh the browser to see the changes - resolver.setCacheable(false); - return resolver; - } - -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/WebAppInitializer.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/WebAppInitializer.java deleted file mode 100644 index 4ac08d71d..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/config/WebAppInitializer.java +++ /dev/null @@ -1,63 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.web.config; - -import java.util.Set; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.web.WebApplicationInitializer; -import org.springframework.web.context.WebApplicationContext; -import org.springframework.web.context.support.AnnotationConfigWebApplicationContext; -import org.springframework.web.servlet.DispatcherServlet; - -import javax.servlet.ServletContext; -import javax.servlet.ServletRegistration; -import org.springframework.web.context.ContextLoaderListener; - -/** - * Replacement for the old web.xml - * @author Jules Jacobsen - */ -public class WebAppInitializer implements WebApplicationInitializer { - - private static final Logger logger = LoggerFactory.getLogger(WebAppInitializer.class); - - @Override - public void onStartup(ServletContext servletContext) { - WebApplicationContext rootContext = createRootContext(servletContext); - - configureSpringMvc(servletContext, rootContext); - } - - - private WebApplicationContext createRootContext(ServletContext servletContext) { - AnnotationConfigWebApplicationContext rootContext = new AnnotationConfigWebApplicationContext(); - - servletContext.addListener(new ContextLoaderListener(rootContext)); - servletContext.setInitParameter("defaultHtmlEscape", "true"); - - return rootContext; - } - - private void configureSpringMvc(ServletContext servletContext, WebApplicationContext rootContext) { - AnnotationConfigWebApplicationContext mvcContext = new AnnotationConfigWebApplicationContext(); - mvcContext.register(WebAppConfig.class); - mvcContext.register(ExomiserConfig.class); - mvcContext.setParent(rootContext); - - ServletRegistration.Dynamic appServlet = servletContext.addServlet("exomiser", new DispatcherServlet(mvcContext)); - appServlet.setLoadOnStartup(1); - Set mappingConflicts = appServlet.addMapping("/"); - - if (!mappingConflicts.isEmpty()) { - for (String s : mappingConflicts) { - logger.error("Mapping conflict: " + s); - } - throw new IllegalStateException("'exomiser' cannot be mapped to '/'"); - } - } - -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/DataController.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/DataController.java deleted file mode 100644 index 91a813f1d..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/DataController.java +++ /dev/null @@ -1,115 +0,0 @@ -/* - * Copyright (C) 2014 jj8 - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ -package de.charite.compbio.exomiser.web.controller; - -import de.charite.compbio.exomiser.web.model.SelectOption; -import de.charite.compbio.exomiser.web.dao.ExomiserDao; -import java.util.ArrayList; -import java.util.Collections; -import java.util.HashSet; -import java.util.List; -import java.util.Map; -import java.util.Map.Entry; -import java.util.Set; -import javax.annotation.PostConstruct; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.bind.annotation.ResponseBody; -import org.springframework.web.bind.annotation.RestController; - -/** - * - * @author Jules Jacobsen - */ -@RestController -@RequestMapping("data") -public class DataController { - private static final Logger logger = LoggerFactory.getLogger(DataController.class); - - @Autowired - private ExomiserDao exomiserDao; - - private Map hpoTerms; - private Set hpoSelectOptions; - - private Map diseases; - private Set diseaseSelectOptions; - - private Map genes; - private Set geneSelectOptions; - - @PostConstruct - private void setUp() { - hpoTerms = exomiserDao.getHpoTerms(); - hpoSelectOptions = makeSelectOptionsFromMap(hpoTerms); - - diseases = exomiserDao.getDiseases(); - diseaseSelectOptions = makeSelectOptionsFromMap(diseases); - - genes = exomiserDao.getGenes(); - geneSelectOptions = makeSelectOptionsFromMap(genes); - - logger.info("Loaded {} HPO, {} disease and {} gene select options", hpoSelectOptions.size(), diseaseSelectOptions.size(), geneSelectOptions.size()); - } - - private Set makeSelectOptionsFromMap(Map inputMap) { - Set selectOptions = new HashSet<>(); - for (Entry entry : inputMap.entrySet()) { - selectOptions.add(new SelectOption(entry.getKey(), entry.getValue())); - } - return selectOptions; - } - - @RequestMapping(value = "disease", method = RequestMethod.GET, produces = "application/json") - public @ResponseBody List getDiseaseOptionsContainingTerm(@RequestParam(value="term") String term) { - logger.info("Searching for disease term '{}'", term); - return findSelectOptionContainingTerm(term, diseaseSelectOptions); - } - - @RequestMapping(value = "hpo", method = RequestMethod.GET, produces = "application/json") - public @ResponseBody List getHpoTermOptionsContainingTerm(@RequestParam(value="term") String term) { - logger.info("Searching for HPO term '{}'", term); - return findSelectOptionContainingTerm(term, hpoSelectOptions); - } - - @RequestMapping(value = "gene", method = RequestMethod.GET, produces = "application/json") - public @ResponseBody List getGeneOptionsContainingTerm(@RequestParam(value="term") String term) { - logger.info("Searching for gene name '{}'", term); - return findSelectOptionContainingTerm(term, geneSelectOptions); - } - - - private List findSelectOptionContainingTerm(String term, Set selectOptions) { - List matches = new ArrayList<>(); - - for (SelectOption selectOption : selectOptions) { - if (selectOption.getText().toLowerCase().contains(term.toLowerCase())) { - matches.add(selectOption); - } - } - Collections.sort(matches); - logger.info("Returning {}", matches); - return matches; - } - - - -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/HomeController.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/HomeController.java deleted file mode 100644 index 166bfa190..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/HomeController.java +++ /dev/null @@ -1,25 +0,0 @@ -/* - * To change this license header, choose License Headers in Project Properties. - * To change this template file, choose Tools | Templates - * and open the template in the editor. - */ -package de.charite.compbio.exomiser.web.controller; - -import org.springframework.stereotype.Controller; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; - -/** - * - * @author Jules Jacobsen - */ -@Controller -@RequestMapping("/") -public class HomeController { - - @RequestMapping(value = "", method = RequestMethod.GET) - public String index() { - return "submit"; - } - -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/SubmitJobController.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/SubmitJobController.java deleted file mode 100644 index e6cd4ff2d..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/controller/SubmitJobController.java +++ /dev/null @@ -1,308 +0,0 @@ -/* - * Copyright (C) 2014 Jules Jacobsen - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ -package de.charite.compbio.exomiser.web.controller; - -import com.fasterxml.jackson.core.JsonProcessingException; -import com.fasterxml.jackson.databind.ObjectMapper; -import com.fasterxml.jackson.databind.SerializationFeature; -import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; -import com.fasterxml.jackson.datatype.jdk7.Jdk7Module; -import de.charite.compbio.exomiser.core.analysis.Analysis; -import de.charite.compbio.exomiser.core.analysis.AnalysisFactory; -import de.charite.compbio.exomiser.core.analysis.AnalysisRunner; -import de.charite.compbio.exomiser.core.analysis.AnalysisMode; -import de.charite.compbio.exomiser.core.filters.FilterReport; -import de.charite.compbio.exomiser.core.analysis.SettingsParser; -import de.charite.compbio.exomiser.core.filters.FilterSettings; -import de.charite.compbio.exomiser.core.filters.FilterSettingsImpl.FilterSettingsBuilder; -import de.charite.compbio.exomiser.core.model.Gene; -import de.charite.compbio.exomiser.core.model.GeneticInterval; -import de.charite.compbio.exomiser.core.model.SampleData; -import de.charite.compbio.exomiser.core.model.VariantEvaluation; -import de.charite.compbio.exomiser.core.prioritisers.PrioritiserSettings; -import de.charite.compbio.exomiser.core.prioritisers.PrioritiserSettingsImpl.PrioritiserSettingsBuilder; -import de.charite.compbio.exomiser.core.writers.ResultsWriterUtils; -import de.charite.compbio.exomiser.core.writers.VariantEffectCount; -import de.charite.compbio.exomiser.core.prioritisers.PriorityType; -import de.charite.compbio.jannovar.data.ReferenceDictionary; -import de.charite.compbio.jannovar.data.ReferenceDictionaryBuilder; -import de.charite.compbio.jannovar.pedigree.ModeOfInheritance; -import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; -import java.io.BufferedReader; -import java.io.IOException; -import java.nio.charset.StandardCharsets; -import java.nio.file.Files; -import java.nio.file.Path; -import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.HashSet; -import java.util.List; -import java.util.Set; -import java.util.TreeSet; -import javax.servlet.http.HttpSession; -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; -import org.springframework.stereotype.Controller; -import org.springframework.ui.Model; -import org.springframework.web.bind.annotation.RequestMapping; -import org.springframework.web.bind.annotation.RequestMethod; -import org.springframework.web.bind.annotation.RequestParam; -import org.springframework.web.multipart.MultipartFile; - -/** - * - * @author Jules Jacobsen - */ -@Controller -public class SubmitJobController { - - private static final Logger logger = LoggerFactory.getLogger(SubmitJobController.class); - - private final ReferenceDictionary referenceDictionary = new ReferenceDictionaryBuilder().build(); - - @Autowired - private SettingsParser settingsParser; - - @Autowired - private AnalysisFactory analysisFactory; - - @Autowired - private int maxVariants; - - @Autowired - private int maxGenes; - - @RequestMapping(value = "submit", method = RequestMethod.GET) - public String configureExomiserJob(Model model) { - return "submit"; - } - - @RequestMapping(value = "submit", method = RequestMethod.POST) - public String submit( - @RequestParam(value = "vcf") MultipartFile vcfFile, - @RequestParam(value = "ped", required = false) MultipartFile pedFile, - @RequestParam(value = "disease", required = false) String diseaseId, - @RequestParam(value = "phenotypes", required = false) List phenotypes, - @RequestParam(value = "min-call-quality", required = false) Float minimumQuality, - @RequestParam(value = "genetic-interval", required = false) String geneticInterval, - @RequestParam("frequency") String frequency, - @RequestParam("remove-dbsnp") Boolean removeDbSnp, - @RequestParam("keep-non-pathogenic") Boolean keepNonPathogenic, - @RequestParam("keep-off-target") Boolean keepOffTarget, - @RequestParam("inheritance") String modeOfInheritance, - @RequestParam(value = "genes-to-keep", required = false) List genesToFilter, - @RequestParam("prioritiser") String prioritiser, - HttpSession session, - Model model) { - - logger.info("Session id: {}", session.getId()); - Path vcfPath = createPathFromMultipartFile(vcfFile); - Path pedPath = createPathFromMultipartFile(pedFile); - - logger.info("Selected disease: {}", diseaseId); - logger.info("Selected phenotypes: {}", phenotypes); - Set genesToKeep = makeGenesToKeep(genesToFilter); - //require a mimimum input of a VCF file and a set of HPO terms - these can come from the diseaseId - if (vcfPath == null) { - return "submit"; - } - - int numVariantsInSample = countVariantLinesInVcf(vcfPath); - if (numVariantsInSample > maxVariants) { - logger.info("{} contains {} variants - this is more than the allowed maximum of {}." - + "Returning user to submit page", vcfPath, numVariantsInSample, maxVariants); - cleanUpSampleFiles(vcfPath, pedPath); - model.addAttribute("numVariants", numVariantsInSample); - return "resubmitWithFewerVariants"; - } - - //TODO: Submit the settings to the ExomiserController to run the job rather than do it here - Analysis analysis = buildAnalysis(Paths.get(vcfFile.getOriginalFilename()), Paths.get(pedFile.getOriginalFilename()), diseaseId, phenotypes, geneticInterval, minimumQuality, removeDbSnp, keepOffTarget, keepNonPathogenic, modeOfInheritance, frequency, genesToKeep, prioritiser); - AnalysisRunner analysisRunner = analysisFactory.getAnalysisRunnerForMode(AnalysisMode.PASS_ONLY); - analysisRunner.runAnalysis(analysis); - - buildResultsModel(model, analysis); - - logger.info("Returning {} results to user", vcfPath.getFileName()); - cleanUpSampleFiles(vcfPath, pedPath); - return "results"; - } - - private int countVariantLinesInVcf(Path vcfPath) { - int variantCount = 0; - try { - BufferedReader fileReader = Files.newBufferedReader(vcfPath, StandardCharsets.UTF_8); - boolean readingVariants = false; - String line; - for (line = fileReader.readLine(); fileReader.readLine() != null;) { - if (line.startsWith("#CHROM")) { - readingVariants = true; - } - while (readingVariants == true) { - variantCount++; - } - } - } catch (IOException ex) { - logger.error("", ex); - } - logger.info("Vcf {} contains {} variants", vcfPath, variantCount); - return variantCount; - } - - private Analysis buildAnalysis(Path vcfPath, Path pedPath, String diseaseId, List phenotypes, String geneticInterval, Float minimumQuality, Boolean removeDbSnp, Boolean keepOffTarget, Boolean keepNonPathogenic, String modeOfInheritance, String frequency, Set genesToKeep, String prioritiser) throws NumberFormatException { - Analysis analysis = new Analysis(); - analysis.setVcfPath(vcfPath); - analysis.setPedPath(pedPath); - analysis.setHpoIds(phenotypes); - analysis.setModeOfInheritance(ModeOfInheritance.valueOf(modeOfInheritance)); - - analysis.setScoringMode(PriorityType.valueOf(prioritiser).getScoringMode()); - analysis.setAnalysisMode(AnalysisMode.PASS_ONLY); - - //Set Filtering Parameters - FilterSettingsBuilder filterSettingsBuilder = new FilterSettingsBuilder() - .minimumQuality(minimumQuality == null ? 0 : minimumQuality) - .removeKnownVariants(removeDbSnp) - .keepOffTargetVariants(keepOffTarget) - .keepNonPathogenic(keepNonPathogenic) - .modeOfInheritance(ModeOfInheritance.valueOf(modeOfInheritance)) - .maximumFrequency(Float.valueOf(frequency)) - .genesToKeep(genesToKeep); - if (geneticInterval != null) { - filterSettingsBuilder.geneticInterval(GeneticInterval.parseString(HG19RefDictBuilder.build(), geneticInterval)); - } - FilterSettings filterSettings = filterSettingsBuilder.build(); - - PrioritiserSettings prioritiserSettings = new PrioritiserSettingsBuilder() - .usePrioritiser(PriorityType.valueOf(prioritiser)) - .diseaseId(diseaseId) - .hpoIdList(phenotypes == null ? new ArrayList() : phenotypes) - .build(); - - analysis.addAllSteps(settingsParser.makeAnalysisSteps(filterSettings, prioritiserSettings)); - - return analysis; - } - - private void buildResultsModel(Model model, Analysis analysis) { - ObjectMapper mapper = new ObjectMapper(new YAMLFactory()); - //required for correct output of Path types - mapper.registerModule(new Jdk7Module()); - mapper.configure(SerializationFeature.INDENT_OUTPUT, true); - mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); - String jsonSettings = ""; - try { - jsonSettings = mapper.writeValueAsString(analysis); - } catch (JsonProcessingException ex) { - logger.error("Unable to process JSON settings", ex); - } - model.addAttribute("settings", jsonSettings); - - SampleData sampleData = analysis.getSampleData(); - //make the user aware of any unanalysed variants - List unAnalysedVarEvals = sampleData.getUnAnnotatedVariantEvaluations(); - model.addAttribute("unAnalysedVarEvals", unAnalysedVarEvals); - - //write out the filter reports section - List filterReports = ResultsWriterUtils.makeFilterReports(analysis); - model.addAttribute("filterReports", filterReports); - - List variantEvaluations = sampleData.getVariantEvaluations(); - List variantEffectCounters = ResultsWriterUtils.makeVariantEffectCounters(variantEvaluations); - model.addAttribute("variantTypeCounters", variantEffectCounters); - - //write out the variant type counters - List sampleNames = sampleData.getSampleNames(); - String sampleName = "Anonymous"; - if (!sampleNames.isEmpty()) { - sampleName = sampleNames.get(0); - } - model.addAttribute("sampleName", sampleName); - model.addAttribute("sampleNames", sampleNames); - - List sampleGenes = sampleData.getGenes(); - model.addAttribute("geneResultsTruncated", false); - int numCandidateGenes = numGenesPassedFilters(sampleGenes); - if (numCandidateGenes > maxGenes) { - logger.info("Truncating number of genes returned - {} "); - model.addAttribute("geneResultsTruncated", true); - model.addAttribute("numCandidateGenes", numCandidateGenes); - model.addAttribute("totalGenes", sampleGenes.size()); - } - - List passedGenes = ResultsWriterUtils.getMaxPassedGenes(sampleGenes, maxGenes); - model.addAttribute("genes", passedGenes); - } - - private int numGenesPassedFilters(List genes) { - int numCandidateGenes = 0; - for (Gene gene : genes) { - if (gene.passedFilters()) { - numCandidateGenes++; - } - } - return numCandidateGenes; - } - - private void cleanUpSampleFiles(Path vcfPath, Path pedPath) { - logger.info("Deleting input files VCF: {} and PED: {}", vcfPath, pedPath); - try { - Files.deleteIfExists(vcfPath); - if (pedPath != null) { - Files.deleteIfExists(pedPath); - } - } catch (IOException ex) { - logger.error("Unable to delete sample files", ex); - } - } - - private Set makeGenesToKeep(List genesToFilter) { - logger.info("Genes to filter: {}", genesToFilter); - if (genesToFilter == null) { - return new HashSet<>(); - } - Set genesToKeep = new TreeSet<>(); - for (String geneId : genesToFilter) { - try { - Integer entrezId = Integer.parseInt(geneId); - logger.info("Adding gene {} to genesToFilter", entrezId); - genesToKeep.add(entrezId); - } catch (NumberFormatException ex) { - logger.error("'{}' not added to genesToKeep as this is not a number.", geneId); - } - } - return genesToKeep; - } - - private Path createPathFromMultipartFile(MultipartFile multipartFile) { - Path tempDirPath = Paths.get(System.getProperty("java.io.tmpdir")); - if (!multipartFile.isEmpty()) { - logger.info("Uploading multipart file: {}", multipartFile.getOriginalFilename()); - try { - Path path = Files.createTempFile(tempDirPath, "temp", multipartFile.getOriginalFilename()); -// Path path = Paths.get(tempDirPath.toString(), multipartFile.getOriginalFilename()); - multipartFile.transferTo(path.toFile()); - return path; - } catch (IOException e) { - logger.error("Failed to upload file {}", multipartFile.getOriginalFilename(), e); - } - } - //PED files are permitted to be null so this is OK really. - return null; - } -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/dao/ExomiserDao.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/dao/ExomiserDao.java deleted file mode 100644 index ddb46e006..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/dao/ExomiserDao.java +++ /dev/null @@ -1,33 +0,0 @@ -/* - * Copyright (C) 2014 jj8 - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ -package de.charite.compbio.exomiser.web.dao; - -import java.util.Map; - -/** - * - * @author Jules Jacobsen - */ -public interface ExomiserDao { - - public Map getDiseases(); - - public Map getHpoTerms(); - - public Map getGenes(); - -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/dao/JdbcExomiserDao.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/dao/JdbcExomiserDao.java deleted file mode 100644 index b96ac037c..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/dao/JdbcExomiserDao.java +++ /dev/null @@ -1,129 +0,0 @@ -/* - * The Exomiser - A tool to annotate and prioritize variants - * - * Copyright (C) 2012 - 2016 Charite Universitätsmedizin Berlin and Genome Research Ltd. - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU Affero General Public License as - * published by the Free Software Foundation, either version 3 of the - * License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU Affero General Public License for more details. - * - * You should have received a copy of the GNU Affero General Public License - * along with this program. If not, see . - */ -package de.charite.compbio.exomiser.web.dao; - -import org.slf4j.Logger; -import org.slf4j.LoggerFactory; -import org.springframework.beans.factory.annotation.Autowired; - -import javax.sql.DataSource; -import java.sql.Connection; -import java.sql.PreparedStatement; -import java.sql.ResultSet; -import java.sql.SQLException; -import java.util.Collections; -import java.util.Map; -import java.util.concurrent.ConcurrentHashMap; - -/** - * - * @author Jules Jacobsen - */ -public class JdbcExomiserDao implements ExomiserDao { - - Logger logger = LoggerFactory.getLogger(JdbcExomiserDao.class); - - @Autowired - private DataSource dataSource; - - @Override - public Map getDiseases() { - String query = "SELECT disease_id, diseasename FROM disease"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement preparedStatement = createPreparedStatement(connection, query); - ResultSet rs = preparedStatement.executeQuery()) { - - return processGetDiseasesResults(rs); - - } catch (SQLException e) { - logger.error("Error executing getDiseases query: ", e); - } - - return Collections.emptyMap(); - } - - @Override - public Map getHpoTerms() { - String query = "select id, lcname from hpo"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement preparedStatement = createPreparedStatement(connection, query); - ResultSet rs = preparedStatement.executeQuery()) { - - return processGetHpoTermsResults(rs); - - } catch (SQLException e) { - logger.error("Error executing getHpoTerms query: ", e); - } - - return Collections.emptyMap(); - } - - @Override - public Map getGenes() { - String query = "select entrez_id, human_gene_symbol from human2mouse_orthologs"; - try ( - Connection connection = dataSource.getConnection(); - PreparedStatement preparedStatement = createPreparedStatement(connection, query); - ResultSet rs = preparedStatement.executeQuery()) { - - return processGetHpoTermsResults(rs); - - } catch (SQLException e) { - logger.error("Error executing getGenes query: ", e); - } - - return Collections.emptyMap(); - } - - private PreparedStatement createPreparedStatement(Connection connection, String query) throws SQLException { - PreparedStatement preparedStatement = connection.prepareStatement(query); - return preparedStatement; - } - - private Map processGetDiseasesResults(ResultSet rs) throws SQLException { - Map diseaseIdToTerms = new ConcurrentHashMap<>(); - - while (rs.next()) { - String diseaseId = rs.getString(1); - String diseaseTerm = (rs.getString(2) == null)? "": rs.getString(2); - if (diseaseId != null) { - diseaseId = diseaseId.trim(); - diseaseIdToTerms.put(diseaseId, diseaseTerm); - } - } - - return diseaseIdToTerms; - } - - private Map processGetHpoTermsResults(ResultSet rs) throws SQLException { - Map hpoTerms = new ConcurrentHashMap<>(); - - while (rs.next()) { - String hpId = rs.getString(1); - String hpTerm = rs.getString(2); - hpId = hpId.trim(); - hpoTerms.put(hpId, hpTerm); - } - - return hpoTerms; - } - -} diff --git a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/model/SelectOption.java b/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/model/SelectOption.java deleted file mode 100644 index ac9b464d5..000000000 --- a/exomiser-web/src/main/java/de/charite/compbio/exomiser/web/model/SelectOption.java +++ /dev/null @@ -1,76 +0,0 @@ -/* - * Copyright (C) 2014 jj8 - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see . - */ -package de.charite.compbio.exomiser.web.model; - -import java.util.Objects; - -/** - * Bean class to represent an HTML select option. - * - * @author Jules Jacobsen - */ -public class SelectOption implements Comparable{ - - private final String text; - private final String value; - - public SelectOption(String value, String text) { - this.value = value; - this.text = text; - } - - public String getText() { - return text; - } - - public String getValue() { - return value; - } - - @Override - public int hashCode() { - int hash = 3; - hash = 97 * hash + Objects.hashCode(this.text); - hash = 97 * hash + Objects.hashCode(this.value); - return hash; - } - - @Override - public boolean equals(Object obj) { - if (obj == null) { - return false; - } - if (getClass() != obj.getClass()) { - return false; - } - final SelectOption other = (SelectOption) obj; - if (!Objects.equals(this.text, other.text)) { - return false; - } - return Objects.equals(this.value, other.value); - } - - @Override - public int compareTo(SelectOption other) { - return this.text.compareTo(other.text); - } - - @Override - public String toString() { - return "{text=" + text + ", value=" + value + "}"; - } -} diff --git a/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/ExomiserWebApp.java b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/ExomiserWebApp.java new file mode 100644 index 000000000..cfca75ab0 --- /dev/null +++ b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/ExomiserWebApp.java @@ -0,0 +1,38 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.web; + +import org.monarchinitiative.exomiser.autoconfigure.EnableExomiser; +import org.springframework.boot.SpringApplication; +import org.springframework.boot.autoconfigure.SpringBootApplication; + +/** + * @author Jules Jacobsen + */ +@EnableExomiser +@SpringBootApplication +public class ExomiserWebApp { + + public static void main(String[] args) { + SpringApplication.run(ExomiserWebApp.class, args); + } + +} diff --git a/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/config/ControllerConfig.java b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/config/ControllerConfig.java new file mode 100644 index 000000000..cc185c6d4 --- /dev/null +++ b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/config/ControllerConfig.java @@ -0,0 +1,72 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +/* + * To change this license header, choose License Headers in Project Properties. + * To change this template file, choose Tools | Templates + * and open the template in the editor. + */ +package org.monarchinitiative.exomiser.web.config; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.context.annotation.Bean; +import org.springframework.context.annotation.Configuration; +import org.springframework.core.env.Environment; +import org.springframework.web.servlet.config.annotation.WebMvcConfigurerAdapter; + +/** + * + * @author Jules Jacobsen + */ +@Configuration +public class ControllerConfig extends WebMvcConfigurerAdapter { + + Logger logger = LoggerFactory.getLogger(ControllerConfig.class); + + @Autowired + private Environment env; + + @Bean + public Integer maxVariants() { + Integer maxVariants = Integer.valueOf(env.getProperty("exomiser.web.max-variants")); + logger.info("Set max variants to {}", maxVariants); + return maxVariants; + } + + @Bean + public Integer maxGenes() { + Integer maxGenes = Integer.valueOf(env.getProperty("exomiser.web.max-genes")); + logger.info("Set max genes to {}", maxGenes); + return maxGenes; + } + + @Bean + public Boolean clinicalInstance() { + Boolean clinicalInstance = Boolean.valueOf(env.getProperty("exomiser.web.clinical-instance")); + if (clinicalInstance) { + logger.info("Instance is running in a CLINICAL setting."); + } else { + logger.info("Instance is running in a NON-CLINICAL setting."); + } + return clinicalInstance; + } +} diff --git a/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/DataController.java b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/DataController.java new file mode 100644 index 000000000..96751c7c9 --- /dev/null +++ b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/DataController.java @@ -0,0 +1,114 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ +package org.monarchinitiative.exomiser.web.controller; + +import org.monarchinitiative.exomiser.web.dao.ExomiserDao; +import org.monarchinitiative.exomiser.web.model.SelectOption; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.web.bind.annotation.*; + +import javax.annotation.PostConstruct; +import java.util.*; +import java.util.Map.Entry; + +/** + * + * @author Jules Jacobsen + */ +@RestController +@RequestMapping("data") +public class DataController { + private static final Logger logger = LoggerFactory.getLogger(DataController.class); + + private final ExomiserDao exomiserDao; + + private Map hpoTerms; + private Set hpoSelectOptions; + + private Map diseases; + private Set diseaseSelectOptions; + + private Map genes; + private Set geneSelectOptions; + + @Autowired + public DataController(ExomiserDao exomiserDao) { + this.exomiserDao = exomiserDao; + } + + @PostConstruct + private void setUp() { + hpoTerms = exomiserDao.getHpoTerms(); + hpoSelectOptions = makeSelectOptionsFromMap(hpoTerms); + + diseases = exomiserDao.getDiseases(); + diseaseSelectOptions = makeSelectOptionsFromMap(diseases); + + genes = exomiserDao.getGenes(); + geneSelectOptions = makeSelectOptionsFromMap(genes); + + logger.info("Loaded {} HPO, {} disease and {} gene select options", hpoSelectOptions.size(), diseaseSelectOptions.size(), geneSelectOptions.size()); + } + + private Set makeSelectOptionsFromMap(Map inputMap) { + Set selectOptions = new HashSet<>(); + for (Entry entry : inputMap.entrySet()) { + selectOptions.add(new SelectOption(entry.getKey(), entry.getValue())); + } + return selectOptions; + } + + @GetMapping(value = "disease", produces = "application/json;charset=UTF-8") + public @ResponseBody List getDiseaseOptionsContainingTerm(@RequestParam(value="term") String term) { + logger.info("Searching for disease term '{}'", term); + return findSelectOptionContainingTerm(term, diseaseSelectOptions); + } + + @GetMapping(value = "hpo", produces = "application/json;charset=UTF-8") + public @ResponseBody List getHpoTermOptionsContainingTerm(@RequestParam(value="term") String term) { + logger.info("Searching for HPO term '{}'", term); + return findSelectOptionContainingTerm(term, hpoSelectOptions); + } + + @GetMapping(value = "gene", produces = "application/json;charset=UTF-8") + public @ResponseBody List getGeneOptionsContainingTerm(@RequestParam(value="term") String term) { + logger.info("Searching for gene name '{}'", term); + return findSelectOptionContainingTerm(term, geneSelectOptions); + } + + + private List findSelectOptionContainingTerm(String term, Set selectOptions) { + List matches = new ArrayList<>(); + + for (SelectOption selectOption : selectOptions) { + if (selectOption.getText().toLowerCase().contains(term.toLowerCase())) { + matches.add(selectOption); + } + } + Collections.sort(matches); + logger.info("Returning {}", matches); + return matches; + } + + + +} diff --git a/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/StaticPageController.java b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/StaticPageController.java new file mode 100644 index 000000000..43b261194 --- /dev/null +++ b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/StaticPageController.java @@ -0,0 +1,61 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ + +package org.monarchinitiative.exomiser.web.controller; + +import org.springframework.stereotype.Controller; +import org.springframework.web.bind.annotation.GetMapping; + +/** + * @author Jules Jacobsen + */ +@Controller +public class StaticPageController { + + @GetMapping(value = "/") + public String root() { + return "index"; + } + + @GetMapping(value = "index") + public String index() { + return "index"; + } + + @GetMapping(value = "publications") + public String publications() { + return "publications"; + } + + @GetMapping(value = "download") + public String download() { + return "download"; + } + + @GetMapping(value = "legal") + public String legal() { + return "legal"; + } + + @GetMapping(value = "about") + public String about() { + return "about"; + } +} diff --git a/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/SubmitJobController.java b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/SubmitJobController.java new file mode 100644 index 000000000..2ad488c5d --- /dev/null +++ b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/controller/SubmitJobController.java @@ -0,0 +1,348 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ +package org.monarchinitiative.exomiser.web.controller; + +import com.fasterxml.jackson.core.JsonProcessingException; +import com.fasterxml.jackson.databind.ObjectMapper; +import com.fasterxml.jackson.databind.SerializationFeature; +import com.fasterxml.jackson.dataformat.yaml.YAMLFactory; +import com.fasterxml.jackson.datatype.jdk7.Jdk7Module; +import de.charite.compbio.jannovar.mendel.ModeOfInheritance; +import de.charite.compbio.jannovar.reference.HG19RefDictBuilder; +import org.monarchinitiative.exomiser.core.Exomiser; +import org.monarchinitiative.exomiser.core.analysis.*; +import org.monarchinitiative.exomiser.core.filters.FilterReport; +import org.monarchinitiative.exomiser.core.model.Gene; +import org.monarchinitiative.exomiser.core.model.GeneticInterval; +import org.monarchinitiative.exomiser.core.model.VariantEvaluation; +import org.monarchinitiative.exomiser.core.prioritisers.PriorityType; +import org.monarchinitiative.exomiser.core.prioritisers.service.PriorityService; +import org.monarchinitiative.exomiser.core.writers.*; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Controller; +import org.springframework.ui.Model; +import org.springframework.web.bind.annotation.GetMapping; +import org.springframework.web.bind.annotation.PostMapping; +import org.springframework.web.bind.annotation.RequestParam; +import org.springframework.web.multipart.MultipartFile; + +import javax.servlet.http.HttpSession; +import java.io.BufferedReader; +import java.io.IOException; +import java.nio.charset.StandardCharsets; +import java.nio.file.Files; +import java.nio.file.Path; +import java.nio.file.Paths; +import java.util.*; + +/** + * + * @author Jules Jacobsen + */ +@Controller +public class SubmitJobController { + + private static final Logger logger = LoggerFactory.getLogger(SubmitJobController.class); + + @Autowired + private Integer maxVariants; + @Autowired + private Integer maxGenes; + @Autowired + private boolean clinicalInstance; + + @Autowired + private Exomiser exomiser; + @Autowired + private SettingsParser settingsParser; + @Autowired + private PriorityService priorityService; + @Autowired + private ResultsWriterFactory resultsWriterFactory; + + @GetMapping(value = "submit") + public String submit() { + return "submit"; + } + + @PostMapping(value = "submit") + public String submit( + @RequestParam(value = "vcf") MultipartFile vcfFile, + @RequestParam(value = "ped", required = false) MultipartFile pedFile, + @RequestParam(value = "proband", required = false) String proband, + @RequestParam(value = "disease", required = false) String diseaseId, + @RequestParam(value = "phenotypes", required = false) List phenotypes, + @RequestParam(value = "min-call-quality", required = false) Float minimumQuality, + @RequestParam(value = "genetic-interval", required = false) String geneticInterval, + @RequestParam("frequency") String frequency, + @RequestParam("remove-dbsnp") Boolean removeDbSnp, + @RequestParam("keep-non-pathogenic") Boolean keepNonPathogenic, + @RequestParam("keep-off-target") Boolean keepOffTarget, + @RequestParam("inheritance") String modeOfInheritance, + @RequestParam(value = "genes-to-keep", required = false) List genesToFilter, + @RequestParam("prioritiser") String prioritiser, + HttpSession session, + Model model) { + + UUID analysisId = UUID.randomUUID(); + logger.info("Analysis id: {}", analysisId); + Path vcfPath = createVcfPathFromMultipartFile(vcfFile); + Path pedPath = createPedPathFromMultipartFile(pedFile); + //require a mimimum input of a VCF file and a set of HPO terms - these can come from the diseaseId + if (vcfPath == null) { + logger.info("User did not submit a VCF - returning to submission page"); + return "submit"; + } + + if (phenotypes == null && diseaseId == null) { + logger.info("User did not provide a disease or phenotype set - returning to submission page"); + return "submit"; + } + + if(phenotypes == null) { + logger.info("No phenotypes provided - trying to use disease phenotypes"); + phenotypes = getDiseasePhenotypes(diseaseId); + } + + logger.info("Using disease: {}", diseaseId); + logger.info("Using phenotypes: {}", phenotypes); + + int numVariantsInSample = countVariantLinesInVcf(vcfPath); + if (numVariantsInSample > maxVariants) { + logger.info("{} contains {} variants - this is more than the allowed maximum of {}." + + "Returning user to submit page", vcfPath, numVariantsInSample, maxVariants); + cleanUpSampleFiles(vcfPath, pedPath); + model.addAttribute("numVariants", numVariantsInSample); + return "resubmitWithFewerVariants"; + } + + Analysis analysis = buildAnalysis(vcfPath, pedPath, proband, diseaseId, phenotypes, geneticInterval, minimumQuality, removeDbSnp, keepOffTarget, keepNonPathogenic, modeOfInheritance, frequency, makeGenesToKeep(genesToFilter), prioritiser); + AnalysisResults analysisResults = exomiser.run(analysis); + + Path outputDir = Paths.get(System.getProperty("java.io.tmpdir"), analysisId.toString()); + try { + Files.createDirectory(outputDir); + } catch (IOException e) { + logger.error("Unable to create directory {}", outputDir, e); + } + logger.info("Output dir: {}", outputDir); + String outFileName = outputDir.toString() + "/results"; + OutputSettings outputSettings = OutputSettings.builder() + .numberOfGenesToShow(20) + .outputPrefix(outFileName) + //OutputFormat.HTML, causes issues due to thymeleaf templating + .outputFormats(EnumSet.of(OutputFormat.TSV_GENE, OutputFormat.TSV_VARIANT, OutputFormat.VCF)) + .build(); + + for (OutputFormat outFormat : outputSettings.getOutputFormats()) { + ResultsWriter resultsWriter = resultsWriterFactory.getResultsWriter(outFormat); + resultsWriter.writeFile(analysis, analysisResults, outputSettings); + } + + buildResultsModel(model, analysis, analysisResults); + logger.info("Returning {} results to user", vcfPath.getFileName()); + cleanUpSampleFiles(vcfPath, pedPath); + return "results"; + } + + private List getDiseasePhenotypes(String diseaseId) { + if (diseaseId == null || diseaseId.isEmpty()) { + return Collections.emptyList(); + } + return priorityService.getHpoIdsForDiseaseId(diseaseId); + } + + private int countVariantLinesInVcf(Path vcfPath) { + int variantCount = 0; + try (BufferedReader fileReader = Files.newBufferedReader(vcfPath, StandardCharsets.UTF_8)) { + boolean readingVariants = false; + String line; + for (line = fileReader.readLine(); fileReader.readLine() != null;) { + if (line.startsWith("#CHROM")) { + readingVariants = true; + } + while (readingVariants) { + variantCount++; + } + } + } catch (IOException ex) { + logger.error("", ex); + } + logger.info("Vcf {} contains {} variants", vcfPath, variantCount); + return variantCount; + } + + private Analysis buildAnalysis(Path vcfPath, Path pedPath, String proband, String diseaseId, List phenotypes, String geneticInterval, Float minimumQuality, Boolean removeDbSnp, Boolean keepOffTarget, Boolean keepNonPathogenic, String modeOfInheritance, String frequency, Set genesToKeep, String prioritiser) { + + Settings settings = Settings.builder() + .vcfFilePath(vcfPath) + .pedFilePath(pedPath) + .probandSampleName(proband) + .hpoIdList(phenotypes) + .modeOfInheritance(ModeOfInheritance.valueOf(modeOfInheritance)) + .minimumQuality(minimumQuality == null ? 0 : minimumQuality) + .removeKnownVariants(removeDbSnp) + .keepOffTargetVariants(keepOffTarget) + .keepNonPathogenic(keepNonPathogenic) + .maximumFrequency(Float.valueOf(frequency)) + .genesToKeep(genesToKeep) + .geneticInterval(geneticInterval != null ? GeneticInterval.parseString(HG19RefDictBuilder.build(), geneticInterval) : null) + .usePrioritiser(PriorityType.valueOf(prioritiser)) + .diseaseId(diseaseId) + .build(); + + Analysis sparseAnalysis = settingsParser.parse(settings); + + return sparseAnalysis + .copy() + .analysisMode(AnalysisMode.PASS_ONLY) + .build(); + } + + private void buildResultsModel(Model model, Analysis analysis, AnalysisResults analysisResults) { + ObjectMapper mapper = new ObjectMapper(new YAMLFactory()); + //required for correct output of Path types + mapper.registerModule(new Jdk7Module()); + mapper.configure(SerializationFeature.INDENT_OUTPUT, true); + mapper.configure(SerializationFeature.WRITE_ENUMS_USING_TO_STRING, true); + String jsonSettings = ""; + try { + jsonSettings = mapper.writeValueAsString(analysis); + } catch (JsonProcessingException ex) { + logger.error("Unable to process JSON settings", ex); + } + model.addAttribute("settings", jsonSettings); + + //make the user aware of any unanalysed variants + List unAnalysedVarEvals = analysisResults.getUnAnnotatedVariantEvaluations(); + model.addAttribute("unAnalysedVarEvals", unAnalysedVarEvals); + + //write out the filter reports section + List filterReports = ResultsWriterUtils.makeFilterReports(analysis, analysisResults); + model.addAttribute("filterReports", filterReports); + + List variantEvaluations = analysisResults.getVariantEvaluations(); + List variantEffectCounters = ResultsWriterUtils.makeVariantEffectCounters(variantEvaluations); + model.addAttribute("variantTypeCounters", variantEffectCounters); + + //write out the variant type counters + List sampleNames = analysisResults.getSampleNames(); + String sampleName = "Anonymous"; + if (!sampleNames.isEmpty()) { + sampleName = sampleNames.get(0); + } + model.addAttribute("sampleName", sampleName); + model.addAttribute("sampleNames", sampleNames); + + List sampleGenes = analysisResults.getGenes(); + model.addAttribute("geneResultsTruncated", false); + int numCandidateGenes = numGenesPassedFilters(sampleGenes); + if (numCandidateGenes > maxGenes) { + logger.info("Truncating number of genes returned to {} ", maxGenes); + model.addAttribute("geneResultsTruncated", true); + model.addAttribute("numCandidateGenes", numCandidateGenes); + model.addAttribute("totalGenes", sampleGenes.size()); + } + + List passedGenes = ResultsWriterUtils.getMaxPassedGenes(sampleGenes, maxGenes); + model.addAttribute("genes", passedGenes); + //this will change the links to the relevant resource. + // For the time being we're going to maintain the original behaviour (UCSC) + // Need to wire it up through the system or it might be easiest to autodetect this from the transcripts of passed variants. + // One of UCSC, ENSEMBL or REFSEQ + model.addAttribute("transcriptDb", "UCSC"); + model.addAttribute("variantRankComparator", new VariantEvaluation.RankBasedComparator()); + } + + private int numGenesPassedFilters(List genes) { + int numCandidateGenes = 0; + for (Gene gene : genes) { + if (gene.passedFilters()) { + numCandidateGenes++; + } + } + return numCandidateGenes; + } + + //This throws 'java.nio.file.FileSystemException: The process cannot access the file because it is being used by another process.' + // when on Windows as it seems tha Tomcat is locking the files/not setting the correct owner permissions. + private void cleanUpSampleFiles(Path vcfPath, Path pedPath) { + deleteSampleFile(vcfPath); + deleteSampleFile(pedPath); + } + + private void deleteSampleFile(Path sampleFile) { + try { + if (sampleFile != null) { + logger.info("Deleting sample input file {}", sampleFile); + Files.deleteIfExists(sampleFile); + } + } catch (IOException ex) { + logger.error("Unable to delete sample file {}", sampleFile, ex); + } + } + + private Set makeGenesToKeep(List genesToFilter) { + logger.info("Genes to filter: {}", genesToFilter); + if (genesToFilter == null) { + return new HashSet<>(); + } + Set genesToKeep = new TreeSet<>(); + for (String geneId : genesToFilter) { + try { + Integer entrezId = Integer.parseInt(geneId); + logger.info("Adding gene {} to genesToFilter", entrezId); + genesToKeep.add(entrezId); + } catch (NumberFormatException ex) { + logger.error("'{}' not added to genesToKeep as this is not a number.", geneId); + } + } + return genesToKeep; + } + + private Path createVcfPathFromMultipartFile(MultipartFile multipartVcfFile) { + if (multipartVcfFile.getOriginalFilename().endsWith(".vcf.gz")) { + return createPathFromMultipartFile(multipartVcfFile, ".vcf.gz"); + } + return createPathFromMultipartFile(multipartVcfFile, ".vcf"); + } + + private Path createPedPathFromMultipartFile(MultipartFile multipartPedFile) { + return createPathFromMultipartFile(multipartPedFile, ".ped"); + } + + private Path createPathFromMultipartFile(MultipartFile multipartFile, String suffix) { + Path tempDirPath = Paths.get(System.getProperty("java.io.tmpdir")); + if (!multipartFile.isEmpty()) { + logger.info("Uploading multipart file: {}", multipartFile.getOriginalFilename()); + try { + Path path = Files.createTempFile(tempDirPath, "exomiser-", suffix); + multipartFile.transferTo(path.toFile()); + return path; + } catch (IOException e) { + logger.error("Failed to upload file {}", multipartFile.getOriginalFilename(), e); + } + } + //PED files are permitted to be null so this is OK really. + return null; + } +} diff --git a/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/dao/ExomiserDao.java b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/dao/ExomiserDao.java new file mode 100644 index 000000000..f3b77a2b0 --- /dev/null +++ b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/dao/ExomiserDao.java @@ -0,0 +1,36 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ +package org.monarchinitiative.exomiser.web.dao; + +import java.util.Map; + +/** + * + * @author Jules Jacobsen + */ +public interface ExomiserDao { + + Map getDiseases(); + + Map getHpoTerms(); + + Map getGenes(); + +} diff --git a/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/dao/JdbcExomiserDao.java b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/dao/JdbcExomiserDao.java new file mode 100644 index 000000000..5e4c961f6 --- /dev/null +++ b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/dao/JdbcExomiserDao.java @@ -0,0 +1,136 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ +package org.monarchinitiative.exomiser.web.dao; + +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; +import org.springframework.beans.factory.annotation.Autowired; +import org.springframework.stereotype.Component; + +import javax.sql.DataSource; +import java.sql.Connection; +import java.sql.PreparedStatement; +import java.sql.ResultSet; +import java.sql.SQLException; +import java.util.Collections; +import java.util.Map; +import java.util.concurrent.ConcurrentHashMap; + +/** + * + * @author Jules Jacobsen + */ +@Component +public class JdbcExomiserDao implements ExomiserDao { + + private static final Logger logger = LoggerFactory.getLogger(JdbcExomiserDao.class); + + private final DataSource dataSource; + + @Autowired + public JdbcExomiserDao(DataSource dataSource) { + this.dataSource = dataSource; + } + + @Override + public Map getDiseases() { + String query = "SELECT disease_id, diseasename FROM disease"; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement preparedStatement = createPreparedStatement(connection, query); + ResultSet rs = preparedStatement.executeQuery()) { + + return processGetDiseasesResults(rs); + + } catch (SQLException e) { + logger.error("Error executing getDiseases query: ", e); + } + + return Collections.emptyMap(); + } + + @Override + public Map getHpoTerms() { + String query = "select id, lcname from hpo"; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement preparedStatement = createPreparedStatement(connection, query); + ResultSet rs = preparedStatement.executeQuery()) { + + return processGetHpoTermsResults(rs); + + } catch (SQLException e) { + logger.error("Error executing getHpoTerms query: ", e); + } + + return Collections.emptyMap(); + } + + @Override + public Map getGenes() { + String query = "select entrez_id, human_gene_symbol from human2mouse_orthologs"; + try ( + Connection connection = dataSource.getConnection(); + PreparedStatement preparedStatement = createPreparedStatement(connection, query); + ResultSet rs = preparedStatement.executeQuery()) { + + return processGetHpoTermsResults(rs); + + } catch (SQLException e) { + logger.error("Error executing getGenes query: ", e); + } + + return Collections.emptyMap(); + } + + private PreparedStatement createPreparedStatement(Connection connection, String query) throws SQLException { + PreparedStatement preparedStatement = connection.prepareStatement(query); + return preparedStatement; + } + + private Map processGetDiseasesResults(ResultSet rs) throws SQLException { + Map diseaseIdToTerms = new ConcurrentHashMap<>(); + + while (rs.next()) { + String diseaseId = rs.getString(1); + String diseaseTerm = (rs.getString(2) == null)? "": rs.getString(2); + if (diseaseId != null) { + diseaseId = diseaseId.trim(); + diseaseIdToTerms.put(diseaseId, diseaseTerm); + } + } + + return diseaseIdToTerms; + } + + private Map processGetHpoTermsResults(ResultSet rs) throws SQLException { + Map hpoTerms = new ConcurrentHashMap<>(); + + while (rs.next()) { + String hpId = rs.getString(1); + String hpTerm = rs.getString(2); + hpId = hpId.trim(); + hpoTerms.put(hpId, hpTerm); + } + + return hpoTerms; + } + +} diff --git a/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/model/SelectOption.java b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/model/SelectOption.java new file mode 100644 index 000000000..c4a55e039 --- /dev/null +++ b/exomiser-web/src/main/java/org/monarchinitiative/exomiser/web/model/SelectOption.java @@ -0,0 +1,79 @@ +/* + * The Exomiser - A tool to annotate and prioritize genomic variants + * + * Copyright (c) 2016-2017 Queen Mary University of London. + * Copyright (c) 2012-2016 Charité Universitätsmedizin Berlin and Genome Research Ltd. + * + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU Affero General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see . + */ +package org.monarchinitiative.exomiser.web.model; + +import java.util.Objects; + +/** + * Bean class to represent an HTML select option. + * + * @author Jules Jacobsen + */ +public class SelectOption implements Comparable{ + + private final String text; + private final String value; + + public SelectOption(String value, String text) { + this.value = value; + this.text = text; + } + + public String getText() { + return text; + } + + public String getValue() { + return value; + } + + @Override + public int hashCode() { + int hash = 3; + hash = 97 * hash + Objects.hashCode(this.text); + hash = 97 * hash + Objects.hashCode(this.value); + return hash; + } + + @Override + public boolean equals(Object obj) { + if (obj == null) { + return false; + } + if (getClass() != obj.getClass()) { + return false; + } + final SelectOption other = (SelectOption) obj; + if (!Objects.equals(this.text, other.text)) { + return false; + } + return Objects.equals(this.value, other.value); + } + + @Override + public int compareTo(SelectOption other) { + return this.text.compareTo(other.text); + } + + @Override + public String toString() { + return "{text=" + text + ", value=" + value + "}"; + } +} diff --git a/exomiser-web/src/main/resources/application.properties b/exomiser-web/src/main/resources/application.properties new file mode 100644 index 000000000..2b069b848 --- /dev/null +++ b/exomiser-web/src/main/resources/application.properties @@ -0,0 +1,41 @@ +# +# The Exomiser - A tool to annotate and prioritize variants +# +# Copyright (C) 2012 - 2016 Charite Universittsmedizin Berlin and Genome Research Ltd. +# +# This program is free software: you can redistribute it and/or modify +# it under the terms of the GNU Affero General Public License as +# published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see . +# +spring.application.name=exomiser-web + +server.context-path=/exomiser/ +server.compression.enabled=true +server.port=8080 +server.display-name=Exomiser Web Server + + +spring.http.multipart.enabled=true +spring.http.multipart.max-file-size=75MB +spring.http.multipart.max-request-size=75MB + +#due to hardware and page timeout constraints +#we need to limit the maximum number of variants which will be analysed +exomiser.web.max-variants=100000 +#max genes especially hits the RAM usage for rendering a page so this is limited +exomiser.web.max-genes=30 +#If this instance is running on hardware located in a clinical setting where patient data is +#protected according to local policy, this can be set to true to disable the warning on the analysis submission page. +exomiser.web.clinical-instance=false + +exomiser.data-directory=${data.dir} +exomiser.cache=ehcache \ No newline at end of file diff --git a/exomiser-web/src/main/resources/banner.txt b/exomiser-web/src/main/resources/banner.txt new file mode 100644 index 000000000..b2c04abc0 --- /dev/null +++ b/exomiser-web/src/main/resources/banner.txt @@ -0,0 +1,7 @@ + _____ _ _____ _ + |_ _| |__ ___ | ____|_ _____ _ __ ___ (_)___ ___ _ __ + | | | '_ \ / _ \ | _| \ \/ / _ \| '_ ` _ \| / __|/ _ \ '__| + | | | | | | __/ | |___ > < (_) | | | | | | \__ \ __/ | + |_| |_| |_|\___| |_____/_/\_\___/|_| |_| |_|_|___/\___|_| + + === Web Server === v${project.version} diff --git a/exomiser-web/src/main/resources/ehcache.xml b/exomiser-web/src/main/resources/ehcache.xml index e09929b15..fff8a2832 100644 --- a/exomiser-web/src/main/resources/ehcache.xml +++ b/exomiser-web/src/main/resources/ehcache.xml @@ -13,6 +13,9 @@ + + + diff --git a/exomiser-web/src/main/resources/exomiser.properties b/exomiser-web/src/main/resources/exomiser.properties deleted file mode 100644 index 4f17a1a8b..000000000 --- a/exomiser-web/src/main/resources/exomiser.properties +++ /dev/null @@ -1,41 +0,0 @@ -#root path where data is to be downloaded and worked on -#it is assumed that all the files required by exomiser listed in this properties file -#will be found in the dataDir directory. -dataDir=${data.dir} - -#due to hardware and page timeout constraints -#we need to limit the maximum number of variants which will be analysed -maxVariants=100000 -#max genes especially hits the RAM usage for rendering a page so this is limited -maxGenes=200 - -#Full path to the H2 database file (leave blank to use the default location) -#h2Path= -#toggle to switch between using the embedded H2 and a external PostgreSQL database -#usePostgreSQL=false -#these are the necessary credentials for connecting to your PostgreSQL server -#username= -#password= -#server= -#database= -#port= - -#set the number of database connections you want this process to use - this should really only need 4 connections per job -#maxConnections=5 - -################################################################### -# Don't touch anything below here unless you want to break things # -################################################################### - -#name of ucsc.ser file created from Jannovar for defining known exon locations -ucscFileName=ucsc_hg19.ser - -randomWalkFileName=rw_string_9_05.gz - -randomWalkIndexFileName=rw_string_9_05_id2index.gz -#phenix directory -phenomizerDataDir=phenix - -hpoOntologyFile=hp.obo - -hpoAnnotationFile=phenotype_annotation.tab \ No newline at end of file diff --git a/exomiser-web/src/main/resources/log4j2.xml b/exomiser-web/src/main/resources/log4j2.xml deleted file mode 100644 index 266775898..000000000 --- a/exomiser-web/src/main/resources/log4j2.xml +++ /dev/null @@ -1,22 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - \ No newline at end of file diff --git a/exomiser-web/src/main/resources/logback.groovy b/exomiser-web/src/main/resources/logback.groovy deleted file mode 100644 index e4f867a0f..000000000 --- a/exomiser-web/src/main/resources/logback.groovy +++ /dev/null @@ -1,19 +0,0 @@ - -appender("FILE", FileAppender) { - file = "logs/exomiser.log" - append = true - encoder(PatternLayoutEncoder) { - pattern = "%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger - %msg%n" - } -} - -appender("CONSOLE", ConsoleAppender) { - encoder(PatternLayoutEncoder) { - pattern = "%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger - %msg%n" - } -} - -logger("de.charite.compbio.exomiser", INFO) -logger("org.thymeleaf", ERROR) - -root(INFO, ["CONSOLE", "FILE"]) \ No newline at end of file diff --git a/exomiser-web/src/test/resources/Pfeiffer.vcf b/exomiser-web/src/main/resources/static/Pfeiffer.vcf similarity index 100% rename from exomiser-web/src/test/resources/Pfeiffer.vcf rename to exomiser-web/src/main/resources/static/Pfeiffer.vcf diff --git a/exomiser-web/src/main/webapp/resources/chosen_v1.2.0/chosen-bootstrap.css b/exomiser-web/src/main/resources/static/css/bootstrap-chosen/bootstrap-chosen.css similarity index 100% rename from exomiser-web/src/main/webapp/resources/chosen_v1.2.0/chosen-bootstrap.css rename to exomiser-web/src/main/resources/static/css/bootstrap-chosen/bootstrap-chosen.css diff --git a/exomiser-web/src/main/webapp/resources/chosen_v1.2.0/chosen-sprite.png b/exomiser-web/src/main/resources/static/css/bootstrap-chosen/chosen-sprite.png similarity index 100% rename from exomiser-web/src/main/webapp/resources/chosen_v1.2.0/chosen-sprite.png rename to exomiser-web/src/main/resources/static/css/bootstrap-chosen/chosen-sprite.png diff --git a/exomiser-web/src/main/webapp/resources/chosen_v1.2.0/chosen-sprite@2x.png b/exomiser-web/src/main/resources/static/css/bootstrap-chosen/chosen-sprite@2x.png similarity index 100% rename from exomiser-web/src/main/webapp/resources/chosen_v1.2.0/chosen-sprite@2x.png rename to exomiser-web/src/main/resources/static/css/bootstrap-chosen/chosen-sprite@2x.png diff --git a/exomiser-web/src/main/resources/static/favicon.ico b/exomiser-web/src/main/resources/static/favicon.ico new file mode 100644 index 000000000..40084eb4f Binary files /dev/null and b/exomiser-web/src/main/resources/static/favicon.ico differ diff --git a/exomiser-web/src/main/webapp/resources/chosen_v1.2.0/ajax-chosen.min.js b/exomiser-web/src/main/resources/static/js/ajax-chosen/ajax-chosen.min.js similarity index 100% rename from exomiser-web/src/main/webapp/resources/chosen_v1.2.0/ajax-chosen.min.js rename to exomiser-web/src/main/resources/static/js/ajax-chosen/ajax-chosen.min.js diff --git a/exomiser-web/src/main/resources/static/logo.png b/exomiser-web/src/main/resources/static/logo.png new file mode 100644 index 000000000..8190294b9 Binary files /dev/null and b/exomiser-web/src/main/resources/static/logo.png differ diff --git a/exomiser-web/src/main/resources/static/monarch_logo.png b/exomiser-web/src/main/resources/static/monarch_logo.png new file mode 100644 index 000000000..683c86d88 Binary files /dev/null and b/exomiser-web/src/main/resources/static/monarch_logo.png differ diff --git a/exomiser-web/src/main/resources/templates/about.html b/exomiser-web/src/main/resources/templates/about.html new file mode 100644 index 000000000..7952717aa --- /dev/null +++ b/exomiser-web/src/main/resources/templates/about.html @@ -0,0 +1,91 @@ + + + + + Exomiser :: About + + + + + + + +

    + +
    +

    Who we are

    +

    + The Monarch Initiative is a collaboration between Oregon Health & Science University, + The Jackson Laboratory, Lawrence Berkeley National Laboratory, the University of + Pittsburgh, Sanger Institute, Charité - Universitätsmedizin Berlin, Garvan Institute of Medical Research, + and William Harvey Research Institute, Barts & The London School of Medicine & Dentistry, + Queen Mary University of London. +

    +
    + +
    +

    Source Data

    +

    + We are grateful to the many original + sources of our data for allowing Monarch to integrate them in this way. +

    +
    + +
    +

    Funding

    + Monarch is supported generously by a NIH Office of the Director Grant #5R24OD011883, + as well as by NIH-UDP: HHSN268201300036C, HHSN268201400093P, NCI/Leidos #15X143.
    +
    + +
    + + + + + + diff --git a/exomiser-web/src/main/resources/templates/legal.html b/exomiser-web/src/main/resources/templates/legal.html new file mode 100644 index 000000000..8cf255e59 --- /dev/null +++ b/exomiser-web/src/main/resources/templates/legal.html @@ -0,0 +1,90 @@ + + + + + + Exomiser :: Legal + + + + + + + + + + + +
    +

    + You have been identified as a recipient of one or more Monarch Initiative software and/or data collection tools, including but not limited to the Exomiser (“Monarch Tools”) developed in part at Oregon Health & Science University (“OHSU”). OHSU provides you the Monarch Tools under the following limitations. By accessing and using one or more Monarch Tools, you agree to the following terms ("Terms"), which constitute a legally binding agreement between you and OHSU. If you do not agree with any of these Terms, please do not use or access the Monarch Tools. +

    +

    Disclaimer

    +

    + + YOU ACKNOWLEDGE THAT THE MONARCH TOOLS, INCLUDING WITHOUT LIMITATION, THE DATABASE OF INFORMATION CONTAINED THEREIN, IS EXPERIMENTAL AND ACADEMIC IN NATURE, AND IS NOT LICENSED BY THE U.S. FOOD AND DRUG ADMINISTRATION OR ANY OTHER REGULATORY BODY. + THE MONARCH TOOLS ARE PROVIDED ON AN "AS IS" AND “AS AVAILABLE” BASIS WITH ALL FAULTS, WITHOUT WARRANTY OR REPRESENTATION OF ANY KIND, EXPRESS OR IMPLIED. OHSU DISCLAIM ALL WARRANTIES AND REPRESENTATIONS, EXPRESS OR IMPLIED, WITH RESPECT TO THE MONARCH TOOLS, INCLUDING WITHOUT LIMITATION, ANY WARRANTIES OF TITLE, MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NON-INFRINGEMENT OF THIRD PARTY RIGHTS. THIS DISCLAIMER APPLIES TO THE FULLEST EXTENT POSSIBLE. OHSU DOES NOT WARRANT THAT THE MONARCH TOOLS WILL MEET YOUR REQUIREMENTS OR THAT THE USE OF THE MONARCH TOOLS WILL BE FREE OF INFECTION OR VIRUSES, ERROR-FREE, UNINTERRUPED, SECURE OR WILL PRODUCE ACCURATE RESULTS. YOU SHALL BEAR TOTAL AND EXCLUSIVE RESPONSIBILITY AND RISK FOR THE USE OF THE MONARCH TOOLS. YOU SHALL BE SOLELY RESPONSIBLE FOR ANY RESULTING DAMAGE TO YOUR COMPUTER SYSTEMS OR LOSS OF DATA. IF YOU ARE DISSATISFIED WITH THE MONARCH TOOLS, OR WITH ANY OF THESE TERMS, YOUR SOLE AND EXCLUSIVE REMEDY IS TO DISCONTINUE USING THE MONARCH TOOLS. + +

    +

    Limitation of Liability

    +

    + + IN NO EVENT SHALL OHSU, OR THEIR RESPECTIVE DIRECTORS, OFFICERS, EMPLOYEES, AGENTS, LICENSEES, LICENSORS, CONTRIBUTORS, FOUNDERS OR ADVISORS, OR ANY OTHER PERSON WHO HAS BEEN INVOLVED IN THE CREATION OR PRODUCTION OF THE MONARCH TOOLS (EACH A “RELEASED PARTY” AND COLLECTIVELY, "RELEASED PARTIES") BE LIABLE FOR ANY CLAIMS, DEMANDS, LIABILITIES, COSTS, LOSSES, DAMAGES OR EXPENSES (INCLUDING WITHOUT LIMITATION LEGAL COSTS AND ATTORNEYS’ FEES) CAUSED TO OR SUFFERED BY ANY PERSONS OR ENTITIES (INCLUDING WITHOUT LIMITATION, YOU), THAT DIRECTLY OR INDIRECTLY ARISE OUT OF OR RESULT FROM THE USE OF, THE INABILITY TO USE, OR ERRORS, OMISSIONS, INTERRUPTIONS OR OTHER INACCURACIES IN, THE MONARCH TOOLS OR VIOLATION OF ANY RIGHTS OF ANY THIRD PARTY. WITHOUT LIMITING THE FOREGOING, THE RELEASED PARTIES SHALL NOT BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, CONSEQUENTIAL, SPECIAL, PUNITIVE OR EXEMPLARY DAMAGES, OR ANY OTHER DAMAGES OF ANY KIND, INCLUDING WITHOUT LIMITATION, DAMAGES FOR LOSS OF BUSINESS, LOSS OF DATA, LOST PROFITS OR BUSINESS INTERRUPTION, UNDER ANY CONTRACT, NEGLIGENCE, STRICT LIABILITY OR OTHER THEORY, EVEN IF A RELEASED PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES. THIS LIMITATION OF LIABILITY APPLIES TO THE FULLEST EXTENT POSSIBLE. + +

    +
    + +
    + + + + + diff --git a/exomiser-web/src/main/resources/templates/submit.html b/exomiser-web/src/main/resources/templates/submit.html new file mode 100644 index 000000000..a9dedf81c --- /dev/null +++ b/exomiser-web/src/main/resources/templates/submit.html @@ -0,0 +1,321 @@ + + + + + + Exomiser :: Analysis + + + + + + + + + + +
    + +

    Analysis Options

    +
    +
    +
    +

    Upload Sample Files

    +
    +
    +
    +
    + + + +

    Required. Upload exome sequencing results in VCF format. We can only accept files containing up to 100000 variants. + Example file with causative FGFR2 + variant for the autosomal dominant Pfeiffer syndrome added to exome of a + healthy individual +

    +
    +
    +
    +
    + + +

    Only required for multi-sample VCF files

    +
    +
    +
    +
    + + +

    Sample identifier for the proband as in the VCF and PED files. Only required for multi-sample VCF files

    +
    +
    +
    +
    +
    +
    +

    Enter Sample Phenotypes

    +
    +
    + +
    + +
    + +
    +
    + +
    + +
    + + +

    Input terms from the HPO. These will override any phenotypes derived from the specified disease!

    +
    +
    +
    +
    +
    +
    +

    Set Filtering Parameters

    +
    +
    +
    + +
    +
    + Phred + +
    +
    + + +
    + +
    + + +
    + +
    +
    +
    + +
    +
    + Chr + +
    +
    + + +
    + +
    + + +
    + +
    +
    +
    + +
    +
    + MAF + + % +
    +
    + + +
    + +
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    +
    +
    +

    Choose Prioritiser

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    +
    +
    + + +
    +
    +
    +
    + + +

    + Please be patient and do not mash the submit button - the analysis could take a minute or two depending on the size of the sample and load on the server. + VCF files are stored as temporary files on our server and deleted following analysis. For performance reasons only the top 100 genes are returned. + If you require the Exomiser for analysing large samples or batches of multiple samples we strongly suggest you download and run the + offline version available from the FTP site. + The Exomiser is freely available for academic users or for private use. Other users are requested to contact us to obtain a license. +

    + + +
    +
    +
    + + +
    + + + + + + + + + diff --git a/exomiser-web/src/main/webapp/META-INF/context.xml b/exomiser-web/src/main/webapp/META-INF/context.xml deleted file mode 100644 index 28bcdaecd..000000000 --- a/exomiser-web/src/main/webapp/META-INF/context.xml +++ /dev/null @@ -1,4 +0,0 @@ - - - - diff --git a/exomiser-web/src/main/webapp/WEB-INF/templates/index.html b/exomiser-web/src/main/webapp/WEB-INF/templates/index.html deleted file mode 100644 index 5aa40d2a1..000000000 --- a/exomiser-web/src/main/webapp/WEB-INF/templates/index.html +++ /dev/null @@ -1,58 +0,0 @@ - - - - - Exomiser - - - - - - -
    -

    The Exomiser: A Tool to Annotate and Filter Variants

    -
    -
    -

    - The Exomiser is a Java program that functionally annotates variants from whole-exome - sequencing data starting from a VCF file (version 4). The functional annotation code is - based on Annovar and uses - UCSC KnownGene transcript definitions and - hg19 genomic coordinates -

    -

    - Variants are prioritized according to user-defined criteria on variant frequency, pathogenicity, - quality, inheritance pattern, and model organism phenotype data. Predicted pathogenicity data - was extracted from the dbNSFP resource. - Cross-species phenotype comparisons come from our PhenoDigm tool powered - by the OWLSim algorithm. -

    -

    - The Exomiser was developed by the Computational Biology and Bioinformatics group at the - Institute for Medical Genetics and Human Genetics of the - Charité - Universitätsmedizin Berlin, the Mouse - Informatics Group at the Sanger Institute and other members of - the Monarch initiative. -

    -

    - Read more in our paper: Robinson P, Köhler S, Oellrich A, Sanger Mouse Genetics Project, Wang K, Mungall C, Lewis SE, Washington N, Bauer S, Seelow D, Krawitz P, Gilissen C, Haendel M and Smedley D. Improved exome prioritization of disease genes through cross species phenotype comparison. Genome Research. 2014 Feb;24(2):340-8. -

    -

    - Download Exomiser New -

    - -
    - -
    -
    -
    -
    - - diff --git a/exomiser-web/src/main/webapp/WEB-INF/templates/resubmitWithFewerVariants.html b/exomiser-web/src/main/webapp/WEB-INF/templates/resubmitWithFewerVariants.html deleted file mode 100644 index c5d68aec4..000000000 --- a/exomiser-web/src/main/webapp/WEB-INF/templates/resubmitWithFewerVariants.html +++ /dev/null @@ -1,29 +0,0 @@ - - - - - Analysis Settings - - - - - - - - - - - - diff --git a/exomiser-web/src/main/webapp/WEB-INF/templates/results.html b/exomiser-web/src/main/webapp/WEB-INF/templates/results.html deleted file mode 100644 index e6ad0dca8..000000000 --- a/exomiser-web/src/main/webapp/WEB-INF/templates/results.html +++ /dev/null @@ -1,247 +0,0 @@ - - - - - - The Exomiser - A Tool to Annotate and Prioritise Whole-Exome Sequencing Data - - - - - - -
    -

    - Exomiser Analysis Results for Slartibartfast -

    - -
    -
    -

    Settings used for this analysis:

    -
    ExomiserSettings{vcfFilePath=Pfeiffer.vcf, pedFilePath=null, prioritiser=exomiser-mouse, maximumFrequency=1.0, minimumQuality=0.0, geneticInterval=null, removePathFilterCutOff=false, removeDbSnp=false, removeOffTargetVariants=true, candidateGene=, modeOfInheritance=AUTOSOMAL_DOMINANT, diseaseId=OMIM:101600, hpoIds=[], seedGeneList=[], numberOfGenesToShow=0, outFileName=results/Pfeiffer-exomiser-results, outputFormat=[HTML], diseaseGeneFamilyName=, buildVersion=, buildTimestamp=}
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    - - - - - - - - - - - - - - - - - -
    FilterReportPassed filterFailed filter
    Frequency Filter -
      Allele frequency < 1.00 %
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    1691620793
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    Variant TypeSlartibartfast
    MISSENSE1
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    - MISSENSE - chr10:g.123256215T>G [0/1] - - rs141235720 - - (variation viewer) - -
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    Analyzed samples

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    affected: red, parent of affected: light blue, unaffected: white

    - - - - - - - if (this.pedigree.isNthPersonAffected(i)) { - - } else if (this.pedigree.isNthPersonParentOfAffected(i)) { - - } else { - - } - - - - - -
    Sample name: manuel
    famidididfathIDmothIDsexdisease
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    - FGFR2 -

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    - Exomiser Score: 1.005 -
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    - Phenotype Score: 1.004 -
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    - Variant Score: 1.005 -
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    - MISSENSE - chr10:g.123256215T>G [0/1] - - rs141235720 - - (variation viewer) - -
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    Transcripts:
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    - uc001lfg.4 exon6:c.518A> C:p.E173A -
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    Pathogenicity Data:
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    1.00
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    No pathogenicity data
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    Mutation Taster: 0.999 (P)
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    Frequency Data:
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    No frequency data
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    1000Genomes: 0.02%
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    - The Exomizer is a Java program that functionally annotates variants from whole-exome - sequencing data starting from a VCF file (version 4). The functional annotation code is - based on Jannovar and uses - UCSC KnownGene transcript definitions and - hg19 genomic coordinates -

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    - Variants are prioritized according to user-defined criteria on variant frequency, pathogenicity, - quality, inheritance pattern, and model organism phenotype data. Predicted pathogenicity data - was extracted from the dbNSFP resource. -

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    - Developed by the Computational Biology and Bioinformatics group at the - Institute for Medical Genetics and Human Genetics of the - Charité - Universitätsmedizin Berlin and the Mouse - Informatics Group at the Sanger Institute. -

    - - -

    Problems, suggestions, or comments? Please let us know

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    - - - - diff --git a/exomiser-web/src/main/webapp/WEB-INF/templates/submit.html b/exomiser-web/src/main/webapp/WEB-INF/templates/submit.html deleted file mode 100644 index 3e127d97a..000000000 --- a/exomiser-web/src/main/webapp/WEB-INF/templates/submit.html +++ /dev/null @@ -1,268 +0,0 @@ - - - - - Analysis Settings - - - - - - - - - - -
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    Exomiser Analysis Options

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    Upload Sample Files

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    Required. Upload exome sequencing results in VCF format. We can only accept files containing up to 100000 variants. - Example file with causative FGFR2 - variant for the autosomal dominant Pfeiffer syndrome added to exome of a - healthy individual -

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    Only required for multi-sample VCF files

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    Enter Sample Phenotypes

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    Input terms from the HPO. These will override any phenotypes derived from the specified disease!

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    Set Filtering Parameters

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    Choose Prioritiser

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    - Please be patient and do not mash the submit button - the analysis could take a minute or two depending on the size of the sample and load on the server. - VCF files are stored as temporary files on our server and deleted following analysis. For performance reasons only the top 100 genes are returned. - If you require the Exomiser for analysing large samples or batches of multiple samples we strongly suggest you download and run the - offline version available from the FTP site. - The Exomiser is freely available for academic users or for private use. Other users are requested to contact us to obtain a license. -

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    - - - - - - - - diff --git a/exomiser-web/src/main/webapp/resources/bootstrap-3.2.0/css/bootstrap-theme.css b/exomiser-web/src/main/webapp/resources/bootstrap-3.2.0/css/bootstrap-theme.css deleted file mode 100644 index f860bbc06..000000000 --- a/exomiser-web/src/main/webapp/resources/bootstrap-3.2.0/css/bootstrap-theme.css +++ /dev/null @@ -1,442 +0,0 @@ -/*! - * Bootstrap v3.2.0 (http://getbootstrap.com) - * Copyright 2011-2014 Twitter, Inc. - * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) - */ - -.btn-default, -.btn-primary, -.btn-success, -.btn-info, -.btn-warning, -.btn-danger { - text-shadow: 0 -1px 0 rgba(0, 0, 0, .2); - -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075); -} -.btn-default:active, -.btn-primary:active, -.btn-success:active, -.btn-info:active, -.btn-warning:active, -.btn-danger:active, -.btn-default.active, 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}\n\n &:active,\n &.active {\n background-color: darken(@btn-color, 12%);\n border-color: darken(@btn-color, 14%);\n }\n\n &:disabled,\n &[disabled] {\n background-color: darken(@btn-color, 12%);\n background-image: none;\n }\n}\n\n// Common styles\n.btn {\n // Remove the gradient for the pressed/active state\n &:active,\n &.active {\n background-image: none;\n }\n}\n\n// Apply the mixin to the buttons\n.btn-default { .btn-styles(@btn-default-bg); text-shadow: 0 1px 0 #fff; border-color: #ccc; }\n.btn-primary { .btn-styles(@btn-primary-bg); }\n.btn-success { .btn-styles(@btn-success-bg); }\n.btn-info { .btn-styles(@btn-info-bg); }\n.btn-warning { .btn-styles(@btn-warning-bg); }\n.btn-danger { .btn-styles(@btn-danger-bg); }\n\n\n\n//\n// Images\n// --------------------------------------------------\n\n.thumbnail,\n.img-thumbnail {\n .box-shadow(0 1px 2px rgba(0,0,0,.075));\n}\n\n\n\n//\n// Dropdowns\n// --------------------------------------------------\n\n.dropdown-menu > li > a:hover,\n.dropdown-menu > li > a:focus {\n #gradient > .vertical(@start-color: @dropdown-link-hover-bg; @end-color: darken(@dropdown-link-hover-bg, 5%));\n background-color: darken(@dropdown-link-hover-bg, 5%);\n}\n.dropdown-menu > .active > a,\n.dropdown-menu > .active > a:hover,\n.dropdown-menu > .active > a:focus {\n #gradient > .vertical(@start-color: @dropdown-link-active-bg; @end-color: darken(@dropdown-link-active-bg, 5%));\n background-color: darken(@dropdown-link-active-bg, 5%);\n}\n\n\n\n//\n// Navbar\n// --------------------------------------------------\n\n// Default navbar\n.navbar-default {\n #gradient > .vertical(@start-color: lighten(@navbar-default-bg, 10%); @end-color: @navbar-default-bg);\n .reset-filter(); // Remove gradient in IE<10 to fix bug where dropdowns don't get triggered\n border-radius: @navbar-border-radius;\n @shadow: inset 0 1px 0 rgba(255,255,255,.15), 0 1px 5px rgba(0,0,0,.075);\n .box-shadow(@shadow);\n\n .navbar-nav > .active > a {\n #gradient > .vertical(@start-color: darken(@navbar-default-bg, 5%); @end-color: darken(@navbar-default-bg, 2%));\n .box-shadow(inset 0 3px 9px rgba(0,0,0,.075));\n }\n}\n.navbar-brand,\n.navbar-nav > li > a {\n text-shadow: 0 1px 0 rgba(255,255,255,.25);\n}\n\n// Inverted navbar\n.navbar-inverse {\n #gradient > .vertical(@start-color: lighten(@navbar-inverse-bg, 10%); @end-color: @navbar-inverse-bg);\n .reset-filter(); // Remove gradient in IE<10 to fix bug where dropdowns don't get triggered\n\n .navbar-nav > .active > a {\n #gradient > .vertical(@start-color: @navbar-inverse-bg; @end-color: lighten(@navbar-inverse-bg, 2.5%));\n .box-shadow(inset 0 3px 9px rgba(0,0,0,.25));\n }\n\n .navbar-brand,\n .navbar-nav > li > a {\n text-shadow: 0 -1px 0 rgba(0,0,0,.25);\n }\n}\n\n// Undo rounded corners in static and fixed navbars\n.navbar-static-top,\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n border-radius: 0;\n}\n\n\n\n//\n// Alerts\n// --------------------------------------------------\n\n// Common styles\n.alert {\n text-shadow: 0 1px 0 rgba(255,255,255,.2);\n @shadow: inset 0 1px 0 rgba(255,255,255,.25), 0 1px 2px rgba(0,0,0,.05);\n .box-shadow(@shadow);\n}\n\n// Mixin for generating new styles\n.alert-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 7.5%));\n border-color: darken(@color, 15%);\n}\n\n// Apply the mixin to the alerts\n.alert-success { .alert-styles(@alert-success-bg); }\n.alert-info { .alert-styles(@alert-info-bg); }\n.alert-warning { .alert-styles(@alert-warning-bg); }\n.alert-danger { .alert-styles(@alert-danger-bg); }\n\n\n\n//\n// Progress bars\n// --------------------------------------------------\n\n// Give the progress background some depth\n.progress {\n #gradient > .vertical(@start-color: darken(@progress-bg, 4%); @end-color: @progress-bg)\n}\n\n// Mixin for generating new styles\n.progress-bar-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 10%));\n}\n\n// Apply the mixin to the progress bars\n.progress-bar { .progress-bar-styles(@progress-bar-bg); }\n.progress-bar-success { .progress-bar-styles(@progress-bar-success-bg); }\n.progress-bar-info { .progress-bar-styles(@progress-bar-info-bg); }\n.progress-bar-warning { .progress-bar-styles(@progress-bar-warning-bg); }\n.progress-bar-danger { .progress-bar-styles(@progress-bar-danger-bg); }\n\n// Reset the striped class because our mixins don't do multiple gradients and\n// the above custom styles override the new `.progress-bar-striped` in v3.2.0.\n.progress-bar-striped {\n #gradient > .striped();\n}\n\n\n//\n// List groups\n// --------------------------------------------------\n\n.list-group {\n border-radius: @border-radius-base;\n .box-shadow(0 1px 2px rgba(0,0,0,.075));\n}\n.list-group-item.active,\n.list-group-item.active:hover,\n.list-group-item.active:focus {\n text-shadow: 0 -1px 0 darken(@list-group-active-bg, 10%);\n #gradient > .vertical(@start-color: @list-group-active-bg; @end-color: darken(@list-group-active-bg, 7.5%));\n border-color: darken(@list-group-active-border, 7.5%);\n}\n\n\n\n//\n// Panels\n// --------------------------------------------------\n\n// Common styles\n.panel {\n .box-shadow(0 1px 2px rgba(0,0,0,.05));\n}\n\n// Mixin for generating new styles\n.panel-heading-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 5%));\n}\n\n// Apply the mixin to the panel headings only\n.panel-default > .panel-heading { .panel-heading-styles(@panel-default-heading-bg); }\n.panel-primary > .panel-heading { .panel-heading-styles(@panel-primary-heading-bg); }\n.panel-success > .panel-heading { .panel-heading-styles(@panel-success-heading-bg); }\n.panel-info > .panel-heading { .panel-heading-styles(@panel-info-heading-bg); }\n.panel-warning > .panel-heading { .panel-heading-styles(@panel-warning-heading-bg); }\n.panel-danger > .panel-heading { .panel-heading-styles(@panel-danger-heading-bg); }\n\n\n\n//\n// Wells\n// --------------------------------------------------\n\n.well {\n #gradient > .vertical(@start-color: darken(@well-bg, 5%); @end-color: @well-bg);\n border-color: darken(@well-bg, 10%);\n @shadow: inset 0 1px 3px rgba(0,0,0,.05), 0 1px 0 rgba(255,255,255,.1);\n .box-shadow(@shadow);\n}\n","// Vendor Prefixes\n//\n// All vendor mixins are deprecated as of v3.2.0 due to the introduction of\n// Autoprefixer in our Gruntfile. They will be removed in v4.\n\n// - Animations\n// - Backface visibility\n// - Box shadow\n// - Box sizing\n// - Content columns\n// - Hyphens\n// - Placeholder text\n// - Transformations\n// - Transitions\n// - User Select\n\n\n// Animations\n.animation(@animation) {\n -webkit-animation: @animation;\n -o-animation: @animation;\n animation: @animation;\n}\n.animation-name(@name) {\n -webkit-animation-name: @name;\n animation-name: @name;\n}\n.animation-duration(@duration) {\n -webkit-animation-duration: @duration;\n animation-duration: @duration;\n}\n.animation-timing-function(@timing-function) {\n -webkit-animation-timing-function: @timing-function;\n animation-timing-function: @timing-function;\n}\n.animation-delay(@delay) {\n -webkit-animation-delay: @delay;\n animation-delay: @delay;\n}\n.animation-iteration-count(@iteration-count) {\n -webkit-animation-iteration-count: @iteration-count;\n animation-iteration-count: @iteration-count;\n}\n.animation-direction(@direction) {\n -webkit-animation-direction: @direction;\n animation-direction: @direction;\n}\n.animation-fill-mode(@fill-mode) {\n -webkit-animation-fill-mode: @fill-mode;\n animation-fill-mode: @fill-mode;\n}\n\n// Backface visibility\n// Prevent browsers from flickering when using CSS 3D transforms.\n// Default value is `visible`, but can be changed to `hidden`\n\n.backface-visibility(@visibility){\n -webkit-backface-visibility: @visibility;\n -moz-backface-visibility: @visibility;\n backface-visibility: @visibility;\n}\n\n// Drop shadows\n//\n// Note: Deprecated `.box-shadow()` as of v3.1.0 since all of Bootstrap's\n// supported browsers that have box shadow capabilities now support it.\n\n.box-shadow(@shadow) {\n -webkit-box-shadow: @shadow; // iOS <4.3 & Android <4.1\n box-shadow: @shadow;\n}\n\n// Box sizing\n.box-sizing(@boxmodel) {\n -webkit-box-sizing: @boxmodel;\n -moz-box-sizing: @boxmodel;\n box-sizing: @boxmodel;\n}\n\n// CSS3 Content Columns\n.content-columns(@column-count; @column-gap: @grid-gutter-width) {\n -webkit-column-count: @column-count;\n -moz-column-count: @column-count;\n column-count: @column-count;\n -webkit-column-gap: @column-gap;\n -moz-column-gap: @column-gap;\n column-gap: @column-gap;\n}\n\n// Optional hyphenation\n.hyphens(@mode: auto) {\n word-wrap: break-word;\n -webkit-hyphens: @mode;\n -moz-hyphens: @mode;\n -ms-hyphens: @mode; // IE10+\n -o-hyphens: @mode;\n hyphens: @mode;\n}\n\n// Placeholder text\n.placeholder(@color: @input-color-placeholder) {\n &::-moz-placeholder { color: @color; // Firefox\n opacity: 1; } // See https://github.com/twbs/bootstrap/pull/11526\n &:-ms-input-placeholder { color: @color; } // Internet Explorer 10+\n &::-webkit-input-placeholder { color: @color; } // Safari and Chrome\n}\n\n// Transformations\n.scale(@ratio) {\n -webkit-transform: scale(@ratio);\n -ms-transform: scale(@ratio); // IE9 only\n -o-transform: scale(@ratio);\n transform: scale(@ratio);\n}\n.scale(@ratioX; @ratioY) {\n -webkit-transform: scale(@ratioX, @ratioY);\n -ms-transform: scale(@ratioX, @ratioY); // IE9 only\n -o-transform: scale(@ratioX, @ratioY);\n transform: scale(@ratioX, @ratioY);\n}\n.scaleX(@ratio) {\n -webkit-transform: scaleX(@ratio);\n -ms-transform: scaleX(@ratio); // IE9 only\n -o-transform: scaleX(@ratio);\n transform: scaleX(@ratio);\n}\n.scaleY(@ratio) {\n -webkit-transform: scaleY(@ratio);\n -ms-transform: scaleY(@ratio); // IE9 only\n -o-transform: scaleY(@ratio);\n transform: scaleY(@ratio);\n}\n.skew(@x; @y) {\n -webkit-transform: skewX(@x) skewY(@y);\n -ms-transform: skewX(@x) skewY(@y); // See https://github.com/twbs/bootstrap/issues/4885; IE9+\n -o-transform: skewX(@x) skewY(@y);\n transform: skewX(@x) skewY(@y);\n}\n.translate(@x; @y) {\n -webkit-transform: translate(@x, @y);\n -ms-transform: translate(@x, @y); // IE9 only\n -o-transform: translate(@x, @y);\n transform: translate(@x, @y);\n}\n.translate3d(@x; @y; @z) {\n -webkit-transform: translate3d(@x, @y, @z);\n transform: translate3d(@x, @y, @z);\n}\n.rotate(@degrees) {\n -webkit-transform: rotate(@degrees);\n -ms-transform: rotate(@degrees); // IE9 only\n -o-transform: rotate(@degrees);\n transform: rotate(@degrees);\n}\n.rotateX(@degrees) {\n -webkit-transform: rotateX(@degrees);\n -ms-transform: rotateX(@degrees); // IE9 only\n -o-transform: rotateX(@degrees);\n transform: rotateX(@degrees);\n}\n.rotateY(@degrees) {\n -webkit-transform: rotateY(@degrees);\n -ms-transform: rotateY(@degrees); // IE9 only\n -o-transform: rotateY(@degrees);\n transform: rotateY(@degrees);\n}\n.perspective(@perspective) {\n -webkit-perspective: @perspective;\n -moz-perspective: @perspective;\n perspective: @perspective;\n}\n.perspective-origin(@perspective) {\n -webkit-perspective-origin: @perspective;\n -moz-perspective-origin: @perspective;\n perspective-origin: @perspective;\n}\n.transform-origin(@origin) {\n -webkit-transform-origin: @origin;\n -moz-transform-origin: @origin;\n -ms-transform-origin: @origin; // IE9 only\n transform-origin: @origin;\n}\n\n\n// Transitions\n\n.transition(@transition) {\n -webkit-transition: @transition;\n -o-transition: @transition;\n transition: @transition;\n}\n.transition-property(@transition-property) {\n -webkit-transition-property: @transition-property;\n transition-property: @transition-property;\n}\n.transition-delay(@transition-delay) {\n -webkit-transition-delay: @transition-delay;\n transition-delay: @transition-delay;\n}\n.transition-duration(@transition-duration) {\n -webkit-transition-duration: @transition-duration;\n transition-duration: @transition-duration;\n}\n.transition-timing-function(@timing-function) {\n -webkit-transition-timing-function: @timing-function;\n transition-timing-function: @timing-function;\n}\n.transition-transform(@transition) {\n -webkit-transition: -webkit-transform @transition;\n -moz-transition: -moz-transform @transition;\n -o-transition: -o-transform @transition;\n transition: transform @transition;\n}\n\n\n// User select\n// For selecting text on the page\n\n.user-select(@select) {\n -webkit-user-select: @select;\n -moz-user-select: @select;\n -ms-user-select: @select; // IE10+\n user-select: @select;\n}\n",null,"// Gradients\n\n#gradient {\n\n // Horizontal gradient, from left to right\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .horizontal(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to right, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n // Vertical gradient, from top to bottom\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .vertical(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to bottom, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n .directional(@start-color: #555; @end-color: #333; @deg: 45deg) {\n background-repeat: repeat-x;\n background-image: -webkit-linear-gradient(@deg, @start-color, @end-color); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(@deg, @start-color, @end-color); // Opera 12\n background-image: linear-gradient(@deg, @start-color, @end-color); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n }\n .horizontal-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(to right, @start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .vertical-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .radial(@inner-color: #555; @outer-color: #333) {\n background-image: -webkit-radial-gradient(circle, @inner-color, @outer-color);\n background-image: radial-gradient(circle, @inner-color, @outer-color);\n background-repeat: no-repeat;\n }\n .striped(@color: rgba(255,255,255,.15); @angle: 45deg) {\n background-image: -webkit-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n }\n}\n","// Reset filters for IE\n//\n// When you need to remove a gradient background, do not forget to use this to reset\n// the IE filter for IE9 and below.\n\n.reset-filter() {\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(enabled = false)\"));\n}\n"]} \ No newline at end of file diff --git a/exomiser-web/src/main/webapp/resources/bootstrap-3.2.0/css/bootstrap-theme.min.css b/exomiser-web/src/main/webapp/resources/bootstrap-3.2.0/css/bootstrap-theme.min.css deleted file mode 100644 index 2e97597c8..000000000 --- a/exomiser-web/src/main/webapp/resources/bootstrap-3.2.0/css/bootstrap-theme.min.css +++ /dev/null @@ -1,5 +0,0 @@ -/*! - * Bootstrap v3.2.0 (http://getbootstrap.com) - * Copyright 2011-2014 Twitter, Inc. - * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) - */.btn-default,.btn-primary,.btn-success,.btn-info,.btn-warning,.btn-danger{text-shadow:0 -1px 0 rgba(0,0,0,.2);-webkit-box-shadow:inset 0 1px 0 rgba(255,255,255,.15),0 1px 1px rgba(0,0,0,.075);box-shadow:inset 0 1px 0 rgba(255,255,255,.15),0 1px 1px 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- } - .col-sm-offset-8 { - margin-left: 66.66666667%; - } - .col-sm-offset-7 { - margin-left: 58.33333333%; - } - .col-sm-offset-6 { - margin-left: 50%; - } - .col-sm-offset-5 { - margin-left: 41.66666667%; - } - .col-sm-offset-4 { - margin-left: 33.33333333%; - } - .col-sm-offset-3 { - margin-left: 25%; - } - .col-sm-offset-2 { - margin-left: 16.66666667%; - } - .col-sm-offset-1 { - margin-left: 8.33333333%; - } - .col-sm-offset-0 { - margin-left: 0; - } -} -@media (min-width: 992px) { - .col-md-1, .col-md-2, .col-md-3, .col-md-4, .col-md-5, .col-md-6, .col-md-7, .col-md-8, .col-md-9, .col-md-10, .col-md-11, .col-md-12 { - float: left; - } - .col-md-12 { - width: 100%; - } - .col-md-11 { - width: 91.66666667%; - } - .col-md-10 { - width: 83.33333333%; - } - .col-md-9 { - width: 75%; - } - .col-md-8 { - width: 66.66666667%; - } - .col-md-7 { - width: 58.33333333%; - } - .col-md-6 { - width: 50%; - } - .col-md-5 { - width: 41.66666667%; - } - .col-md-4 { - width: 33.33333333%; - } - .col-md-3 { - width: 25%; - } - .col-md-2 { - width: 16.66666667%; - } - .col-md-1 { - width: 8.33333333%; - } - .col-md-pull-12 { - right: 100%; - } - .col-md-pull-11 { - right: 91.66666667%; - } - .col-md-pull-10 { - right: 83.33333333%; - } - .col-md-pull-9 { - right: 75%; - } - .col-md-pull-8 { - right: 66.66666667%; - } - .col-md-pull-7 { - right: 58.33333333%; - } - .col-md-pull-6 { - right: 50%; - } - .col-md-pull-5 { - right: 41.66666667%; - } - .col-md-pull-4 { - right: 33.33333333%; - } - .col-md-pull-3 { - right: 25%; - } - .col-md-pull-2 { - right: 16.66666667%; - } - .col-md-pull-1 { - right: 8.33333333%; - } - .col-md-pull-0 { - right: auto; - } - .col-md-push-12 { - left: 100%; - } - .col-md-push-11 { - left: 91.66666667%; - } - .col-md-push-10 { - left: 83.33333333%; - } - .col-md-push-9 { - left: 75%; - } - .col-md-push-8 { - left: 66.66666667%; - } - .col-md-push-7 { - left: 58.33333333%; - } - .col-md-push-6 { - left: 50%; - } - .col-md-push-5 { - left: 41.66666667%; - } - .col-md-push-4 { - left: 33.33333333%; - } - .col-md-push-3 { - left: 25%; - } - .col-md-push-2 { - left: 16.66666667%; - } - .col-md-push-1 { - left: 8.33333333%; - } - .col-md-push-0 { - left: auto; - } - .col-md-offset-12 { - margin-left: 100%; - } - .col-md-offset-11 { - margin-left: 91.66666667%; - } - .col-md-offset-10 { - margin-left: 83.33333333%; - } - .col-md-offset-9 { - margin-left: 75%; - } - .col-md-offset-8 { - margin-left: 66.66666667%; - } - .col-md-offset-7 { - margin-left: 58.33333333%; - } - .col-md-offset-6 { - margin-left: 50%; - } - .col-md-offset-5 { - margin-left: 41.66666667%; - } - .col-md-offset-4 { - margin-left: 33.33333333%; - } - .col-md-offset-3 { - margin-left: 25%; - } - .col-md-offset-2 { - margin-left: 16.66666667%; - } - .col-md-offset-1 { - margin-left: 8.33333333%; - } - .col-md-offset-0 { - margin-left: 0; - } -} -@media (min-width: 1200px) { - .col-lg-1, .col-lg-2, .col-lg-3, .col-lg-4, .col-lg-5, .col-lg-6, .col-lg-7, .col-lg-8, .col-lg-9, .col-lg-10, .col-lg-11, .col-lg-12 { - float: left; - } - .col-lg-12 { - width: 100%; - } - .col-lg-11 { - width: 91.66666667%; - } - .col-lg-10 { - width: 83.33333333%; - } - .col-lg-9 { - width: 75%; - } - .col-lg-8 { - width: 66.66666667%; - } - .col-lg-7 { - width: 58.33333333%; - } - .col-lg-6 { - width: 50%; - } - .col-lg-5 { - width: 41.66666667%; - } - .col-lg-4 { - width: 33.33333333%; - } - .col-lg-3 { - width: 25%; - } - .col-lg-2 { - width: 16.66666667%; - } - .col-lg-1 { - width: 8.33333333%; - } - .col-lg-pull-12 { - right: 100%; - } - .col-lg-pull-11 { - right: 91.66666667%; - } - .col-lg-pull-10 { - right: 83.33333333%; - } - .col-lg-pull-9 { - right: 75%; - } - .col-lg-pull-8 { - right: 66.66666667%; - } - .col-lg-pull-7 { - right: 58.33333333%; - } - .col-lg-pull-6 { - right: 50%; - } - .col-lg-pull-5 { - right: 41.66666667%; - } - .col-lg-pull-4 { - right: 33.33333333%; - } - .col-lg-pull-3 { - right: 25%; - } - .col-lg-pull-2 { - right: 16.66666667%; - } - .col-lg-pull-1 { - right: 8.33333333%; - } - .col-lg-pull-0 { - right: auto; - } - .col-lg-push-12 { - left: 100%; - } - .col-lg-push-11 { - left: 91.66666667%; - } - .col-lg-push-10 { - left: 83.33333333%; - } - .col-lg-push-9 { - left: 75%; - } - .col-lg-push-8 { - left: 66.66666667%; - } - .col-lg-push-7 { - left: 58.33333333%; - } - .col-lg-push-6 { - left: 50%; - } - .col-lg-push-5 { - left: 41.66666667%; - } - .col-lg-push-4 { - left: 33.33333333%; - } - .col-lg-push-3 { - left: 25%; - } - .col-lg-push-2 { - left: 16.66666667%; - } - .col-lg-push-1 { - left: 8.33333333%; - } - .col-lg-push-0 { - left: auto; - } - .col-lg-offset-12 { - margin-left: 100%; - } - .col-lg-offset-11 { - margin-left: 91.66666667%; - } - .col-lg-offset-10 { - margin-left: 83.33333333%; - } - .col-lg-offset-9 { - margin-left: 75%; - } - .col-lg-offset-8 { - margin-left: 66.66666667%; - } - .col-lg-offset-7 { - margin-left: 58.33333333%; - } - .col-lg-offset-6 { - margin-left: 50%; - } - .col-lg-offset-5 { - margin-left: 41.66666667%; - } - .col-lg-offset-4 { - margin-left: 33.33333333%; - } - .col-lg-offset-3 { - margin-left: 25%; - } - .col-lg-offset-2 { - margin-left: 16.66666667%; - } - .col-lg-offset-1 { - margin-left: 8.33333333%; - } - .col-lg-offset-0 { - margin-left: 0; - } -} -table { - background-color: transparent; -} -th { - text-align: left; -} -.table { - width: 100%; - max-width: 100%; - margin-bottom: 20px; -} -.table > thead > tr > th, -.table > tbody > tr > th, -.table > tfoot > tr > th, -.table > thead > tr > td, -.table > tbody > tr > td, -.table > tfoot > tr > td { - padding: 8px; - line-height: 1.42857143; - vertical-align: top; - border-top: 1px solid #ddd; -} -.table > thead > tr > th { - vertical-align: bottom; - border-bottom: 2px solid #ddd; -} -.table > caption + thead > tr:first-child > th, -.table > colgroup + thead > tr:first-child > th, -.table > thead:first-child > tr:first-child > th, -.table > caption + thead > tr:first-child > td, -.table > colgroup + thead > tr:first-child > td, -.table > thead:first-child > tr:first-child > td { - border-top: 0; -} -.table > tbody + tbody { - border-top: 2px solid #ddd; -} -.table .table { - background-color: #fff; -} -.table-condensed > thead > tr > th, -.table-condensed > tbody > tr > th, -.table-condensed > tfoot > tr > th, -.table-condensed > thead > tr > td, -.table-condensed > tbody > tr > td, -.table-condensed > tfoot > tr > td { - padding: 5px; -} -.table-bordered { - border: 1px solid #ddd; -} -.table-bordered > thead > tr > th, -.table-bordered > tbody > tr > th, -.table-bordered > tfoot > tr > th, -.table-bordered > thead > tr > td, -.table-bordered > tbody > tr > td, -.table-bordered > tfoot > tr > td { - border: 1px solid #ddd; -} -.table-bordered > thead > tr > th, -.table-bordered > thead > tr > td { - border-bottom-width: 2px; -} -.table-striped > tbody > tr:nth-child(odd) > td, -.table-striped > tbody > tr:nth-child(odd) > th { - background-color: #f9f9f9; -} -.table-hover > tbody > tr:hover > td, -.table-hover > tbody > tr:hover > th { - background-color: #f5f5f5; -} -table col[class*="col-"] { - position: static; - display: table-column; - float: none; -} -table td[class*="col-"], -table th[class*="col-"] { - position: static; - display: table-cell; - float: none; -} -.table > thead > tr > td.active, -.table > tbody > tr > td.active, -.table > tfoot > tr > td.active, -.table > thead > tr > th.active, -.table > tbody > tr > th.active, -.table > tfoot > tr > th.active, -.table > thead > tr.active > td, -.table > tbody > tr.active > td, -.table > tfoot > tr.active > td, -.table > thead > tr.active > th, -.table > tbody > tr.active > th, -.table > tfoot > tr.active > th { - background-color: #f5f5f5; -} -.table-hover > tbody > tr > td.active:hover, -.table-hover > tbody > tr > th.active:hover, -.table-hover > tbody > tr.active:hover > td, -.table-hover > tbody > tr:hover > .active, -.table-hover > tbody > tr.active:hover > th { - background-color: #e8e8e8; -} -.table > thead > tr > td.success, -.table > tbody > tr > td.success, -.table > tfoot > tr > td.success, -.table > thead > tr > th.success, -.table > tbody > tr > th.success, -.table > tfoot > tr > th.success, -.table > thead > tr.success > td, -.table > tbody > tr.success > td, -.table > tfoot > tr.success > td, -.table > thead > tr.success > th, -.table > tbody > tr.success > th, -.table > tfoot > tr.success > th { - background-color: #dff0d8; -} -.table-hover > tbody > tr > td.success:hover, -.table-hover > tbody > tr > th.success:hover, -.table-hover > tbody > tr.success:hover > td, -.table-hover > tbody > tr:hover > .success, -.table-hover > tbody > tr.success:hover > th { - background-color: #d0e9c6; -} -.table > thead > tr > td.info, -.table > tbody > tr > td.info, -.table > tfoot > tr > td.info, -.table > thead > tr > th.info, -.table > tbody > tr > th.info, -.table > tfoot > tr > th.info, -.table > thead > tr.info > td, -.table > tbody > tr.info > td, -.table > tfoot > tr.info > td, -.table > thead > tr.info > th, -.table > tbody > tr.info > th, -.table > tfoot > tr.info > th { - background-color: #d9edf7; -} -.table-hover > tbody > tr > td.info:hover, -.table-hover > tbody > tr > th.info:hover, -.table-hover > tbody > tr.info:hover > td, -.table-hover > tbody > tr:hover > .info, -.table-hover > tbody > tr.info:hover > th { - background-color: #c4e3f3; -} -.table > thead > tr > td.warning, -.table > tbody > tr > td.warning, -.table > tfoot > tr > td.warning, -.table > thead > tr > th.warning, -.table > tbody > tr > th.warning, -.table > tfoot > tr > th.warning, -.table > thead > tr.warning > td, -.table > tbody > tr.warning > td, -.table > tfoot > tr.warning > td, -.table > thead > tr.warning > th, -.table > tbody > tr.warning > th, -.table > tfoot > tr.warning > th { - background-color: #fcf8e3; -} -.table-hover > tbody > tr > td.warning:hover, -.table-hover > tbody > tr > th.warning:hover, -.table-hover > tbody > tr.warning:hover > td, -.table-hover > tbody > tr:hover > .warning, -.table-hover > tbody > tr.warning:hover > th { - background-color: #faf2cc; -} -.table > thead > tr > td.danger, -.table > tbody > tr > td.danger, -.table > tfoot > tr > td.danger, -.table > thead > tr > th.danger, -.table > tbody > tr > th.danger, -.table > tfoot > tr > th.danger, -.table > thead > tr.danger > td, -.table > tbody > tr.danger > td, -.table > tfoot > tr.danger > td, -.table > thead > tr.danger > th, -.table > tbody > tr.danger > th, -.table > tfoot > tr.danger > th { - background-color: #f2dede; -} -.table-hover > tbody > tr > td.danger:hover, -.table-hover > tbody > tr > th.danger:hover, -.table-hover > tbody > tr.danger:hover > td, -.table-hover > tbody > tr:hover > .danger, -.table-hover > tbody > tr.danger:hover > th { - background-color: #ebcccc; -} -@media screen and (max-width: 767px) { - .table-responsive { - width: 100%; - margin-bottom: 15px; - overflow-x: auto; - overflow-y: hidden; - -webkit-overflow-scrolling: touch; - -ms-overflow-style: -ms-autohiding-scrollbar; - border: 1px solid #ddd; - } - .table-responsive > .table { - margin-bottom: 0; - } - .table-responsive > .table > thead > tr > th, - .table-responsive > .table > tbody > tr > th, - .table-responsive > .table > tfoot > tr > th, - .table-responsive > .table > thead > tr > td, - .table-responsive > .table > tbody > tr > td, - .table-responsive > .table > tfoot > tr > td { - white-space: nowrap; - } - .table-responsive > .table-bordered { - border: 0; - } - .table-responsive > .table-bordered > thead > tr > th:first-child, - .table-responsive > .table-bordered > tbody > tr > th:first-child, - .table-responsive > .table-bordered > tfoot > tr > th:first-child, - .table-responsive > .table-bordered > thead > tr > td:first-child, - .table-responsive > .table-bordered > tbody > tr > td:first-child, - .table-responsive > .table-bordered > tfoot > tr > td:first-child { - border-left: 0; - } - .table-responsive > .table-bordered > thead > tr > th:last-child, - .table-responsive > .table-bordered > tbody > tr > th:last-child, - .table-responsive > .table-bordered > tfoot > tr > th:last-child, - .table-responsive > .table-bordered > thead > tr > td:last-child, - .table-responsive > .table-bordered > tbody > tr > td:last-child, - .table-responsive > .table-bordered > tfoot > tr > td:last-child { - border-right: 0; - } - .table-responsive > .table-bordered > tbody > tr:last-child > th, - .table-responsive > .table-bordered > tfoot > tr:last-child > th, - .table-responsive > .table-bordered > tbody > tr:last-child > td, - .table-responsive > .table-bordered > tfoot > tr:last-child > td { - border-bottom: 0; - } -} -fieldset { - min-width: 0; - padding: 0; - margin: 0; - border: 0; -} -legend { - display: block; - width: 100%; - padding: 0; - margin-bottom: 20px; - font-size: 21px; - line-height: inherit; - color: #333; - border: 0; - border-bottom: 1px solid #e5e5e5; -} -label { - display: inline-block; - max-width: 100%; - margin-bottom: 5px; - font-weight: bold; -} -input[type="search"] { - -webkit-box-sizing: border-box; - -moz-box-sizing: border-box; - box-sizing: border-box; -} -input[type="radio"], -input[type="checkbox"] { - margin: 4px 0 0; - margin-top: 1px \9; - line-height: normal; -} -input[type="file"] { - display: block; -} -input[type="range"] { - display: block; - width: 100%; -} -select[multiple], -select[size] { - height: auto; -} -input[type="file"]:focus, -input[type="radio"]:focus, -input[type="checkbox"]:focus { - outline: thin dotted; - outline: 5px auto -webkit-focus-ring-color; - outline-offset: -2px; -} -output { - display: block; - padding-top: 7px; - font-size: 14px; - line-height: 1.42857143; - color: #555; -} -.form-control { - display: block; - width: 100%; - height: 34px; - padding: 6px 12px; - font-size: 14px; - line-height: 1.42857143; - color: #555; - background-color: #fff; - background-image: none; - border: 1px solid #ccc; - border-radius: 4px; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - -webkit-transition: border-color ease-in-out .15s, -webkit-box-shadow ease-in-out .15s; - -o-transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s; - transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s; -} -.form-control:focus { - border-color: #66afe9; - outline: 0; - -webkit-box-shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, .6); - box-shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, .6); -} -.form-control::-moz-placeholder { - color: #777; - opacity: 1; -} -.form-control:-ms-input-placeholder { - color: #777; -} -.form-control::-webkit-input-placeholder { - color: #777; -} -.form-control[disabled], -.form-control[readonly], -fieldset[disabled] .form-control { - cursor: not-allowed; - background-color: #eee; - opacity: 1; -} -textarea.form-control { - height: auto; -} -input[type="search"] { - -webkit-appearance: none; -} -input[type="date"], -input[type="time"], -input[type="datetime-local"], -input[type="month"] { - line-height: 34px; - line-height: 1.42857143 \0; -} -input[type="date"].input-sm, -input[type="time"].input-sm, -input[type="datetime-local"].input-sm, -input[type="month"].input-sm { - line-height: 30px; -} -input[type="date"].input-lg, -input[type="time"].input-lg, -input[type="datetime-local"].input-lg, -input[type="month"].input-lg { - line-height: 46px; -} -.form-group { - margin-bottom: 15px; -} -.radio, -.checkbox { - position: relative; - display: block; - min-height: 20px; - margin-top: 10px; - margin-bottom: 10px; -} -.radio label, -.checkbox label { - padding-left: 20px; - margin-bottom: 0; - font-weight: normal; - cursor: pointer; -} -.radio input[type="radio"], -.radio-inline input[type="radio"], -.checkbox input[type="checkbox"], -.checkbox-inline input[type="checkbox"] { - position: absolute; - margin-top: 4px \9; - margin-left: -20px; -} -.radio + .radio, -.checkbox + .checkbox { - margin-top: -5px; -} -.radio-inline, -.checkbox-inline { - display: inline-block; - padding-left: 20px; - margin-bottom: 0; - font-weight: normal; - vertical-align: middle; - cursor: pointer; -} -.radio-inline + .radio-inline, -.checkbox-inline + .checkbox-inline { - margin-top: 0; - margin-left: 10px; -} -input[type="radio"][disabled], -input[type="checkbox"][disabled], -input[type="radio"].disabled, -input[type="checkbox"].disabled, -fieldset[disabled] input[type="radio"], -fieldset[disabled] input[type="checkbox"] { - cursor: not-allowed; -} -.radio-inline.disabled, -.checkbox-inline.disabled, -fieldset[disabled] .radio-inline, -fieldset[disabled] .checkbox-inline { - cursor: not-allowed; -} -.radio.disabled label, -.checkbox.disabled label, -fieldset[disabled] .radio label, -fieldset[disabled] .checkbox label { - cursor: not-allowed; -} -.form-control-static { - padding-top: 7px; - padding-bottom: 7px; - margin-bottom: 0; -} -.form-control-static.input-lg, -.form-control-static.input-sm { - padding-right: 0; - padding-left: 0; -} -.input-sm, -.form-horizontal .form-group-sm .form-control { - height: 30px; - padding: 5px 10px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -select.input-sm { - height: 30px; - line-height: 30px; -} -textarea.input-sm, -select[multiple].input-sm { - height: auto; -} -.input-lg, -.form-horizontal .form-group-lg .form-control { - height: 46px; - padding: 10px 16px; - font-size: 18px; - line-height: 1.33; - border-radius: 6px; -} -select.input-lg { - height: 46px; - line-height: 46px; -} -textarea.input-lg, -select[multiple].input-lg { - height: auto; -} -.has-feedback { - position: relative; -} -.has-feedback .form-control { - padding-right: 42.5px; -} -.form-control-feedback { - position: absolute; - top: 25px; - right: 0; - z-index: 2; - display: block; - width: 34px; - height: 34px; - line-height: 34px; - text-align: center; -} -.input-lg + .form-control-feedback { - width: 46px; - height: 46px; - line-height: 46px; -} -.input-sm + .form-control-feedback { - width: 30px; - height: 30px; - line-height: 30px; -} -.has-success .help-block, -.has-success .control-label, -.has-success .radio, -.has-success .checkbox, -.has-success .radio-inline, -.has-success .checkbox-inline { - color: #3c763d; -} -.has-success .form-control { - border-color: #3c763d; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); -} -.has-success .form-control:focus { - border-color: #2b542c; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #67b168; - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #67b168; -} -.has-success .input-group-addon { - color: #3c763d; - background-color: #dff0d8; - border-color: #3c763d; -} -.has-success .form-control-feedback { - color: #3c763d; -} -.has-warning .help-block, -.has-warning .control-label, -.has-warning .radio, -.has-warning .checkbox, -.has-warning .radio-inline, -.has-warning .checkbox-inline { - color: #8a6d3b; -} -.has-warning .form-control { - border-color: #8a6d3b; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); -} -.has-warning .form-control:focus { - border-color: #66512c; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #c0a16b; - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #c0a16b; -} -.has-warning .input-group-addon { - color: #8a6d3b; - background-color: #fcf8e3; - border-color: #8a6d3b; -} -.has-warning .form-control-feedback { - color: #8a6d3b; -} -.has-error .help-block, -.has-error .control-label, -.has-error .radio, -.has-error .checkbox, -.has-error .radio-inline, -.has-error .checkbox-inline { - color: #a94442; -} -.has-error .form-control { - border-color: #a94442; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075); -} -.has-error .form-control:focus { - border-color: #843534; - -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #ce8483; - box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #ce8483; -} -.has-error .input-group-addon { - color: #a94442; - background-color: #f2dede; - border-color: #a94442; -} -.has-error .form-control-feedback { - color: #a94442; -} -.has-feedback label.sr-only ~ .form-control-feedback { - top: 0; -} -.help-block { - display: block; - margin-top: 5px; - margin-bottom: 10px; - color: #737373; -} -@media (min-width: 768px) { - .form-inline .form-group { - display: inline-block; - margin-bottom: 0; - vertical-align: middle; - } - .form-inline .form-control { - display: inline-block; - width: auto; - vertical-align: middle; - } - .form-inline .input-group { - display: inline-table; - vertical-align: middle; - } - .form-inline .input-group .input-group-addon, - .form-inline .input-group .input-group-btn, - .form-inline .input-group .form-control { - width: auto; - } - .form-inline .input-group > .form-control { - width: 100%; - } - .form-inline .control-label { - margin-bottom: 0; - vertical-align: middle; - } - .form-inline .radio, - .form-inline .checkbox { - display: inline-block; - margin-top: 0; - margin-bottom: 0; - vertical-align: middle; - } - .form-inline .radio label, - .form-inline .checkbox label { - padding-left: 0; - } - .form-inline .radio input[type="radio"], - .form-inline .checkbox input[type="checkbox"] { - position: relative; - margin-left: 0; - } - .form-inline .has-feedback .form-control-feedback { - top: 0; - } -} -.form-horizontal .radio, -.form-horizontal .checkbox, -.form-horizontal .radio-inline, -.form-horizontal .checkbox-inline { - padding-top: 7px; - margin-top: 0; - margin-bottom: 0; -} -.form-horizontal .radio, -.form-horizontal .checkbox { - min-height: 27px; -} -.form-horizontal .form-group { - margin-right: -15px; - margin-left: -15px; -} -@media (min-width: 768px) { - .form-horizontal .control-label { - padding-top: 7px; - margin-bottom: 0; - text-align: right; - } -} -.form-horizontal .has-feedback .form-control-feedback { - top: 0; - right: 15px; -} -@media (min-width: 768px) { - .form-horizontal .form-group-lg .control-label { - padding-top: 14.3px; - } -} -@media (min-width: 768px) { - .form-horizontal .form-group-sm .control-label { - padding-top: 6px; - } -} -.btn { - display: inline-block; - padding: 6px 12px; - margin-bottom: 0; - font-size: 14px; - font-weight: normal; - line-height: 1.42857143; - text-align: center; - white-space: nowrap; - vertical-align: middle; - cursor: pointer; - -webkit-user-select: none; - -moz-user-select: none; - -ms-user-select: none; - user-select: none; - background-image: none; - border: 1px solid transparent; - border-radius: 4px; -} -.btn:focus, -.btn:active:focus, -.btn.active:focus { - outline: thin dotted; - outline: 5px auto -webkit-focus-ring-color; - outline-offset: -2px; -} -.btn:hover, -.btn:focus { - color: #333; - text-decoration: none; -} -.btn:active, -.btn.active { - background-image: none; - outline: 0; - -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125); - box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125); -} -.btn.disabled, -.btn[disabled], -fieldset[disabled] .btn { - pointer-events: none; - cursor: not-allowed; - filter: alpha(opacity=65); - -webkit-box-shadow: none; - box-shadow: none; - opacity: .65; -} -.btn-default { - color: #333; - background-color: #fff; - border-color: #ccc; -} -.btn-default:hover, -.btn-default:focus, -.btn-default:active, -.btn-default.active, -.open > .dropdown-toggle.btn-default { - color: #333; - background-color: #e6e6e6; - border-color: #adadad; -} -.btn-default:active, -.btn-default.active, -.open > .dropdown-toggle.btn-default { - background-image: none; -} -.btn-default.disabled, -.btn-default[disabled], -fieldset[disabled] .btn-default, -.btn-default.disabled:hover, -.btn-default[disabled]:hover, -fieldset[disabled] .btn-default:hover, -.btn-default.disabled:focus, -.btn-default[disabled]:focus, -fieldset[disabled] .btn-default:focus, -.btn-default.disabled:active, -.btn-default[disabled]:active, -fieldset[disabled] .btn-default:active, -.btn-default.disabled.active, -.btn-default[disabled].active, -fieldset[disabled] .btn-default.active { - background-color: #fff; - border-color: #ccc; -} -.btn-default .badge { - color: #fff; - background-color: #333; -} -.btn-primary { - color: #fff; - background-color: #428bca; - border-color: #357ebd; -} -.btn-primary:hover, -.btn-primary:focus, -.btn-primary:active, -.btn-primary.active, -.open > .dropdown-toggle.btn-primary { - color: #fff; - background-color: #3071a9; - border-color: #285e8e; -} -.btn-primary:active, -.btn-primary.active, -.open > .dropdown-toggle.btn-primary { - background-image: none; -} -.btn-primary.disabled, -.btn-primary[disabled], -fieldset[disabled] .btn-primary, -.btn-primary.disabled:hover, -.btn-primary[disabled]:hover, -fieldset[disabled] .btn-primary:hover, -.btn-primary.disabled:focus, -.btn-primary[disabled]:focus, -fieldset[disabled] .btn-primary:focus, -.btn-primary.disabled:active, -.btn-primary[disabled]:active, -fieldset[disabled] .btn-primary:active, -.btn-primary.disabled.active, -.btn-primary[disabled].active, -fieldset[disabled] .btn-primary.active { - background-color: #428bca; - border-color: #357ebd; -} -.btn-primary .badge { - color: #428bca; - background-color: #fff; -} -.btn-success { - color: #fff; - background-color: #5cb85c; - border-color: #4cae4c; -} -.btn-success:hover, -.btn-success:focus, -.btn-success:active, -.btn-success.active, -.open > .dropdown-toggle.btn-success { - color: #fff; - background-color: #449d44; - border-color: #398439; -} -.btn-success:active, -.btn-success.active, -.open > .dropdown-toggle.btn-success { - background-image: none; -} -.btn-success.disabled, -.btn-success[disabled], -fieldset[disabled] .btn-success, -.btn-success.disabled:hover, -.btn-success[disabled]:hover, -fieldset[disabled] .btn-success:hover, -.btn-success.disabled:focus, -.btn-success[disabled]:focus, -fieldset[disabled] .btn-success:focus, -.btn-success.disabled:active, -.btn-success[disabled]:active, -fieldset[disabled] .btn-success:active, -.btn-success.disabled.active, -.btn-success[disabled].active, -fieldset[disabled] .btn-success.active { - background-color: #5cb85c; - border-color: #4cae4c; -} -.btn-success .badge { - color: #5cb85c; - background-color: #fff; -} -.btn-info { - color: #fff; - background-color: #5bc0de; - border-color: #46b8da; -} -.btn-info:hover, -.btn-info:focus, -.btn-info:active, -.btn-info.active, -.open > .dropdown-toggle.btn-info { - color: #fff; - background-color: #31b0d5; - border-color: #269abc; -} -.btn-info:active, -.btn-info.active, -.open > .dropdown-toggle.btn-info { - background-image: none; -} -.btn-info.disabled, -.btn-info[disabled], -fieldset[disabled] .btn-info, -.btn-info.disabled:hover, -.btn-info[disabled]:hover, -fieldset[disabled] .btn-info:hover, -.btn-info.disabled:focus, -.btn-info[disabled]:focus, -fieldset[disabled] .btn-info:focus, -.btn-info.disabled:active, -.btn-info[disabled]:active, -fieldset[disabled] .btn-info:active, -.btn-info.disabled.active, -.btn-info[disabled].active, -fieldset[disabled] .btn-info.active { - background-color: #5bc0de; - border-color: #46b8da; -} -.btn-info .badge { - color: #5bc0de; - background-color: #fff; -} -.btn-warning { - color: #fff; - background-color: #f0ad4e; - border-color: #eea236; -} -.btn-warning:hover, -.btn-warning:focus, -.btn-warning:active, -.btn-warning.active, -.open > .dropdown-toggle.btn-warning { - color: #fff; - background-color: #ec971f; - border-color: #d58512; -} -.btn-warning:active, -.btn-warning.active, -.open > .dropdown-toggle.btn-warning { - background-image: none; -} -.btn-warning.disabled, -.btn-warning[disabled], -fieldset[disabled] .btn-warning, -.btn-warning.disabled:hover, -.btn-warning[disabled]:hover, -fieldset[disabled] .btn-warning:hover, -.btn-warning.disabled:focus, -.btn-warning[disabled]:focus, -fieldset[disabled] .btn-warning:focus, -.btn-warning.disabled:active, -.btn-warning[disabled]:active, -fieldset[disabled] .btn-warning:active, -.btn-warning.disabled.active, -.btn-warning[disabled].active, -fieldset[disabled] .btn-warning.active { - background-color: #f0ad4e; - border-color: #eea236; -} -.btn-warning .badge { - color: #f0ad4e; - background-color: #fff; -} -.btn-danger { - color: #fff; - background-color: #d9534f; - border-color: #d43f3a; -} -.btn-danger:hover, -.btn-danger:focus, -.btn-danger:active, -.btn-danger.active, -.open > .dropdown-toggle.btn-danger { - color: #fff; - background-color: #c9302c; - border-color: #ac2925; -} -.btn-danger:active, -.btn-danger.active, -.open > .dropdown-toggle.btn-danger { - background-image: none; -} -.btn-danger.disabled, -.btn-danger[disabled], -fieldset[disabled] .btn-danger, -.btn-danger.disabled:hover, -.btn-danger[disabled]:hover, -fieldset[disabled] .btn-danger:hover, -.btn-danger.disabled:focus, -.btn-danger[disabled]:focus, -fieldset[disabled] .btn-danger:focus, -.btn-danger.disabled:active, -.btn-danger[disabled]:active, -fieldset[disabled] .btn-danger:active, -.btn-danger.disabled.active, -.btn-danger[disabled].active, -fieldset[disabled] .btn-danger.active { - background-color: #d9534f; - border-color: #d43f3a; -} -.btn-danger .badge { - color: #d9534f; - background-color: #fff; -} -.btn-link { - font-weight: normal; - color: #428bca; - cursor: pointer; - border-radius: 0; -} -.btn-link, -.btn-link:active, -.btn-link[disabled], -fieldset[disabled] .btn-link { - background-color: transparent; - -webkit-box-shadow: none; - box-shadow: none; -} -.btn-link, -.btn-link:hover, -.btn-link:focus, -.btn-link:active { - border-color: transparent; -} -.btn-link:hover, -.btn-link:focus { - color: #2a6496; - text-decoration: underline; - background-color: transparent; -} -.btn-link[disabled]:hover, -fieldset[disabled] .btn-link:hover, -.btn-link[disabled]:focus, -fieldset[disabled] .btn-link:focus { - color: #777; - text-decoration: none; -} -.btn-lg, -.btn-group-lg > .btn { - padding: 10px 16px; - font-size: 18px; - line-height: 1.33; - border-radius: 6px; -} -.btn-sm, -.btn-group-sm > .btn { - padding: 5px 10px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -.btn-xs, -.btn-group-xs > .btn { - padding: 1px 5px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -.btn-block { - display: block; - width: 100%; -} -.btn-block + .btn-block { - margin-top: 5px; -} -input[type="submit"].btn-block, -input[type="reset"].btn-block, -input[type="button"].btn-block { - width: 100%; -} -.fade { - opacity: 0; - -webkit-transition: opacity .15s linear; - -o-transition: opacity .15s linear; - transition: opacity .15s linear; -} -.fade.in { - opacity: 1; -} -.collapse { - display: none; -} -.collapse.in { - display: block; -} -tr.collapse.in { - display: table-row; -} -tbody.collapse.in { - display: table-row-group; -} -.collapsing { - position: relative; - height: 0; - overflow: hidden; - -webkit-transition: height .35s ease; - -o-transition: height .35s ease; - transition: height .35s ease; -} -.caret { - display: inline-block; - width: 0; - height: 0; - margin-left: 2px; - vertical-align: middle; - border-top: 4px solid; - border-right: 4px solid transparent; - border-left: 4px solid transparent; -} -.dropdown { - position: relative; -} -.dropdown-toggle:focus { - outline: 0; -} -.dropdown-menu { - position: absolute; - top: 100%; - left: 0; - z-index: 1000; - display: none; - float: left; - min-width: 160px; - padding: 5px 0; - margin: 2px 0 0; - font-size: 14px; - text-align: left; - list-style: none; - background-color: #fff; - -webkit-background-clip: padding-box; - background-clip: padding-box; - border: 1px solid #ccc; - border: 1px solid rgba(0, 0, 0, .15); - border-radius: 4px; - -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, .175); - box-shadow: 0 6px 12px rgba(0, 0, 0, .175); -} -.dropdown-menu.pull-right { - right: 0; - left: auto; -} -.dropdown-menu .divider { - height: 1px; - margin: 9px 0; - overflow: hidden; - background-color: #e5e5e5; -} -.dropdown-menu > li > a { - display: block; - padding: 3px 20px; - clear: both; - font-weight: normal; - line-height: 1.42857143; - color: #333; - white-space: nowrap; -} -.dropdown-menu > li > a:hover, -.dropdown-menu > li > a:focus { - color: #262626; - text-decoration: none; - background-color: #f5f5f5; -} -.dropdown-menu > .active > a, -.dropdown-menu > .active > a:hover, -.dropdown-menu > .active > a:focus { - color: #fff; - text-decoration: none; - background-color: #428bca; - outline: 0; -} -.dropdown-menu > .disabled > a, -.dropdown-menu > .disabled > a:hover, -.dropdown-menu > .disabled > a:focus { - color: #777; -} -.dropdown-menu > .disabled > a:hover, -.dropdown-menu > .disabled > a:focus { - text-decoration: none; - cursor: not-allowed; - background-color: transparent; - background-image: none; - filter: progid:DXImageTransform.Microsoft.gradient(enabled = false); -} -.open > .dropdown-menu { - display: block; -} -.open > a { - outline: 0; -} -.dropdown-menu-right { - right: 0; - left: auto; -} -.dropdown-menu-left { - right: auto; - left: 0; -} -.dropdown-header { - display: block; - padding: 3px 20px; - font-size: 12px; - line-height: 1.42857143; - color: #777; - white-space: nowrap; -} -.dropdown-backdrop { - position: fixed; - top: 0; - right: 0; - bottom: 0; - left: 0; - z-index: 990; -} -.pull-right > .dropdown-menu { - right: 0; - left: auto; -} -.dropup .caret, -.navbar-fixed-bottom .dropdown .caret { - content: ""; - border-top: 0; - border-bottom: 4px solid; -} -.dropup .dropdown-menu, -.navbar-fixed-bottom .dropdown .dropdown-menu { - top: auto; - bottom: 100%; - margin-bottom: 1px; -} -@media (min-width: 768px) { - .navbar-right .dropdown-menu { - right: 0; - left: auto; - } - .navbar-right .dropdown-menu-left { - right: auto; - left: 0; - } -} -.btn-group, -.btn-group-vertical { - position: relative; - display: inline-block; - vertical-align: middle; -} -.btn-group > .btn, -.btn-group-vertical > .btn { - position: relative; - float: left; -} -.btn-group > .btn:hover, -.btn-group-vertical > .btn:hover, -.btn-group > .btn:focus, -.btn-group-vertical > .btn:focus, -.btn-group > .btn:active, -.btn-group-vertical > .btn:active, -.btn-group > .btn.active, -.btn-group-vertical > .btn.active { - z-index: 2; -} -.btn-group > .btn:focus, -.btn-group-vertical > .btn:focus { - outline: 0; -} -.btn-group .btn + .btn, -.btn-group .btn + .btn-group, -.btn-group .btn-group + .btn, -.btn-group .btn-group + .btn-group { - margin-left: -1px; -} -.btn-toolbar { - margin-left: -5px; -} -.btn-toolbar .btn-group, -.btn-toolbar .input-group { - float: left; -} -.btn-toolbar > .btn, -.btn-toolbar > .btn-group, -.btn-toolbar > .input-group { - margin-left: 5px; -} -.btn-group > .btn:not(:first-child):not(:last-child):not(.dropdown-toggle) { - border-radius: 0; -} -.btn-group > .btn:first-child { - margin-left: 0; -} -.btn-group > .btn:first-child:not(:last-child):not(.dropdown-toggle) { - border-top-right-radius: 0; - border-bottom-right-radius: 0; -} -.btn-group > .btn:last-child:not(:first-child), -.btn-group > .dropdown-toggle:not(:first-child) { - border-top-left-radius: 0; - border-bottom-left-radius: 0; -} -.btn-group > .btn-group { - float: left; -} -.btn-group > .btn-group:not(:first-child):not(:last-child) > .btn { - border-radius: 0; -} -.btn-group > .btn-group:first-child > .btn:last-child, -.btn-group > .btn-group:first-child > .dropdown-toggle { - border-top-right-radius: 0; - border-bottom-right-radius: 0; -} -.btn-group > .btn-group:last-child > .btn:first-child { - border-top-left-radius: 0; - border-bottom-left-radius: 0; -} -.btn-group .dropdown-toggle:active, -.btn-group.open .dropdown-toggle { - outline: 0; -} -.btn-group > .btn + .dropdown-toggle { - padding-right: 8px; - padding-left: 8px; -} -.btn-group > .btn-lg + .dropdown-toggle { - padding-right: 12px; - padding-left: 12px; -} -.btn-group.open .dropdown-toggle { - -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125); - box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125); -} -.btn-group.open .dropdown-toggle.btn-link { - -webkit-box-shadow: none; - box-shadow: none; -} -.btn .caret { - margin-left: 0; -} -.btn-lg .caret { - border-width: 5px 5px 0; - border-bottom-width: 0; -} -.dropup .btn-lg .caret { - border-width: 0 5px 5px; -} -.btn-group-vertical > .btn, -.btn-group-vertical > .btn-group, -.btn-group-vertical > .btn-group > .btn { - display: block; - float: none; - width: 100%; - max-width: 100%; -} -.btn-group-vertical > .btn-group > .btn { - float: none; -} -.btn-group-vertical > .btn + .btn, -.btn-group-vertical > .btn + .btn-group, -.btn-group-vertical > .btn-group + .btn, -.btn-group-vertical > .btn-group + .btn-group { - margin-top: -1px; - margin-left: 0; -} -.btn-group-vertical > .btn:not(:first-child):not(:last-child) { - border-radius: 0; -} -.btn-group-vertical > .btn:first-child:not(:last-child) { - border-top-right-radius: 4px; - border-bottom-right-radius: 0; - border-bottom-left-radius: 0; -} -.btn-group-vertical > .btn:last-child:not(:first-child) { - border-top-left-radius: 0; - border-top-right-radius: 0; - border-bottom-left-radius: 4px; -} -.btn-group-vertical > .btn-group:not(:first-child):not(:last-child) > .btn { - border-radius: 0; -} -.btn-group-vertical > .btn-group:first-child:not(:last-child) > .btn:last-child, -.btn-group-vertical > .btn-group:first-child:not(:last-child) > .dropdown-toggle { - border-bottom-right-radius: 0; - border-bottom-left-radius: 0; -} -.btn-group-vertical > .btn-group:last-child:not(:first-child) > .btn:first-child { - border-top-left-radius: 0; - border-top-right-radius: 0; -} -.btn-group-justified { - display: table; - width: 100%; - table-layout: fixed; - border-collapse: separate; -} -.btn-group-justified > .btn, -.btn-group-justified > .btn-group { - display: table-cell; - float: none; - width: 1%; -} -.btn-group-justified > .btn-group .btn { - width: 100%; -} -.btn-group-justified > .btn-group .dropdown-menu { - left: auto; -} -[data-toggle="buttons"] > .btn > input[type="radio"], -[data-toggle="buttons"] > .btn > input[type="checkbox"] { - position: absolute; - z-index: -1; - filter: alpha(opacity=0); - opacity: 0; -} -.input-group { - position: relative; - display: table; - border-collapse: separate; -} -.input-group[class*="col-"] { - float: none; - padding-right: 0; - padding-left: 0; -} -.input-group .form-control { - position: relative; - z-index: 2; - float: left; - width: 100%; - margin-bottom: 0; -} -.input-group-lg > .form-control, -.input-group-lg > .input-group-addon, -.input-group-lg > .input-group-btn > .btn { - height: 46px; - padding: 10px 16px; - font-size: 18px; - line-height: 1.33; - border-radius: 6px; -} -select.input-group-lg > .form-control, -select.input-group-lg > .input-group-addon, -select.input-group-lg > .input-group-btn > .btn { - height: 46px; - line-height: 46px; -} -textarea.input-group-lg > .form-control, -textarea.input-group-lg > .input-group-addon, -textarea.input-group-lg > .input-group-btn > .btn, -select[multiple].input-group-lg > .form-control, -select[multiple].input-group-lg > .input-group-addon, -select[multiple].input-group-lg > .input-group-btn > .btn { - height: auto; -} -.input-group-sm > .form-control, -.input-group-sm > .input-group-addon, -.input-group-sm > .input-group-btn > .btn { - height: 30px; - padding: 5px 10px; - font-size: 12px; - line-height: 1.5; - border-radius: 3px; -} -select.input-group-sm > .form-control, -select.input-group-sm > .input-group-addon, -select.input-group-sm > .input-group-btn > .btn { - height: 30px; - line-height: 30px; -} -textarea.input-group-sm > .form-control, -textarea.input-group-sm > .input-group-addon, -textarea.input-group-sm > .input-group-btn > .btn, -select[multiple].input-group-sm > .form-control, -select[multiple].input-group-sm > .input-group-addon, -select[multiple].input-group-sm > .input-group-btn > .btn { - height: auto; -} -.input-group-addon, -.input-group-btn, -.input-group .form-control { - display: table-cell; -} -.input-group-addon:not(:first-child):not(:last-child), -.input-group-btn:not(:first-child):not(:last-child), -.input-group .form-control:not(:first-child):not(:last-child) { - border-radius: 0; -} -.input-group-addon, -.input-group-btn { - width: 1%; - white-space: nowrap; - vertical-align: middle; -} -.input-group-addon { - padding: 6px 12px; - font-size: 14px; - font-weight: normal; - line-height: 1; - color: #555; - text-align: center; - background-color: #eee; - border: 1px solid #ccc; - border-radius: 4px; -} -.input-group-addon.input-sm { - padding: 5px 10px; - font-size: 12px; - border-radius: 3px; -} -.input-group-addon.input-lg { - padding: 10px 16px; - font-size: 18px; - border-radius: 6px; -} -.input-group-addon input[type="radio"], -.input-group-addon input[type="checkbox"] { - margin-top: 0; -} -.input-group .form-control:first-child, -.input-group-addon:first-child, -.input-group-btn:first-child > .btn, -.input-group-btn:first-child > .btn-group > .btn, -.input-group-btn:first-child > .dropdown-toggle, -.input-group-btn:last-child > .btn:not(:last-child):not(.dropdown-toggle), -.input-group-btn:last-child > .btn-group:not(:last-child) > .btn { - border-top-right-radius: 0; - border-bottom-right-radius: 0; -} -.input-group-addon:first-child { - border-right: 0; -} -.input-group .form-control:last-child, -.input-group-addon:last-child, -.input-group-btn:last-child > .btn, -.input-group-btn:last-child > .btn-group > .btn, -.input-group-btn:last-child > .dropdown-toggle, -.input-group-btn:first-child > .btn:not(:first-child), -.input-group-btn:first-child > .btn-group:not(:first-child) > .btn { - border-top-left-radius: 0; - border-bottom-left-radius: 0; -} -.input-group-addon:last-child { - border-left: 0; -} -.input-group-btn { - position: relative; - font-size: 0; - white-space: nowrap; -} -.input-group-btn > .btn { - position: relative; -} -.input-group-btn > .btn + .btn { - margin-left: -1px; -} -.input-group-btn > .btn:hover, -.input-group-btn > .btn:focus, -.input-group-btn > .btn:active { - z-index: 2; -} -.input-group-btn:first-child > .btn, -.input-group-btn:first-child > .btn-group { - margin-right: -1px; -} -.input-group-btn:last-child > .btn, -.input-group-btn:last-child > .btn-group { - margin-left: -1px; -} -.nav { - padding-left: 0; - margin-bottom: 0; - list-style: none; -} -.nav > li { - position: relative; - display: block; -} -.nav > li > a { - position: relative; - display: block; - padding: 10px 15px; -} -.nav > li > a:hover, -.nav > li > a:focus { - text-decoration: none; - background-color: #eee; -} -.nav > li.disabled > a { - color: #777; -} -.nav > li.disabled > a:hover, -.nav > li.disabled > a:focus { - color: #777; - text-decoration: none; - cursor: not-allowed; - background-color: transparent; -} -.nav .open > a, -.nav .open > a:hover, -.nav .open > a:focus { - background-color: #eee; - border-color: #428bca; -} -.nav .nav-divider { - height: 1px; - margin: 9px 0; - overflow: hidden; - background-color: #e5e5e5; -} -.nav > li > a > img { - max-width: none; -} -.nav-tabs { - border-bottom: 1px solid #ddd; -} -.nav-tabs > li { - float: left; - margin-bottom: -1px; -} -.nav-tabs > li > a { - margin-right: 2px; - line-height: 1.42857143; - border: 1px solid transparent; - border-radius: 4px 4px 0 0; -} -.nav-tabs > li > a:hover { - border-color: #eee #eee #ddd; -} -.nav-tabs > li.active > a, -.nav-tabs > li.active > a:hover, -.nav-tabs > li.active > a:focus { - color: #555; - cursor: default; - background-color: #fff; - border: 1px solid #ddd; - border-bottom-color: transparent; -} -.nav-tabs.nav-justified { - width: 100%; - border-bottom: 0; -} -.nav-tabs.nav-justified > li { - float: none; -} -.nav-tabs.nav-justified > li > a { - margin-bottom: 5px; - text-align: center; -} -.nav-tabs.nav-justified > .dropdown .dropdown-menu { - top: auto; - left: auto; -} -@media (min-width: 768px) { - .nav-tabs.nav-justified > li { - display: table-cell; - width: 1%; - } - .nav-tabs.nav-justified > li > a { - margin-bottom: 0; - } -} -.nav-tabs.nav-justified > li > a { - margin-right: 0; - border-radius: 4px; -} -.nav-tabs.nav-justified > .active > a, -.nav-tabs.nav-justified > .active > a:hover, -.nav-tabs.nav-justified > .active > a:focus { - border: 1px solid #ddd; -} -@media (min-width: 768px) { - .nav-tabs.nav-justified > li > a { - border-bottom: 1px solid #ddd; - border-radius: 4px 4px 0 0; - } - .nav-tabs.nav-justified > .active > a, - .nav-tabs.nav-justified > .active > a:hover, - .nav-tabs.nav-justified > .active > a:focus { - border-bottom-color: #fff; - } -} -.nav-pills > li { - float: left; -} -.nav-pills > li > a { - border-radius: 4px; -} -.nav-pills > li + li { - margin-left: 2px; -} -.nav-pills > li.active > a, -.nav-pills > li.active > a:hover, -.nav-pills > li.active > a:focus { - color: #fff; - background-color: #428bca; -} -.nav-stacked > li { - float: none; -} -.nav-stacked > li + li { - margin-top: 2px; - margin-left: 0; -} -.nav-justified { - width: 100%; -} -.nav-justified > li { - float: none; -} -.nav-justified > li > a { - margin-bottom: 5px; - text-align: center; -} -.nav-justified > .dropdown .dropdown-menu { - top: auto; - left: auto; -} -@media (min-width: 768px) { - .nav-justified > li { - display: table-cell; - width: 1%; - } - .nav-justified > li > a { - margin-bottom: 0; - } -} -.nav-tabs-justified { - border-bottom: 0; -} -.nav-tabs-justified > li > a { - margin-right: 0; - border-radius: 4px; -} -.nav-tabs-justified > .active > a, -.nav-tabs-justified > .active > a:hover, -.nav-tabs-justified > .active > a:focus { - border: 1px solid #ddd; -} -@media (min-width: 768px) { - .nav-tabs-justified > li > a { - border-bottom: 1px solid #ddd; - border-radius: 4px 4px 0 0; - } - .nav-tabs-justified > .active > a, - .nav-tabs-justified > .active > a:hover, - .nav-tabs-justified > .active > a:focus { - border-bottom-color: #fff; - } -} -.tab-content > .tab-pane { - display: none; -} -.tab-content > .active { - display: block; -} -.nav-tabs .dropdown-menu { - margin-top: -1px; - border-top-left-radius: 0; - border-top-right-radius: 0; -} -.navbar { - position: relative; - min-height: 50px; - margin-bottom: 20px; - border: 1px solid transparent; -} -@media (min-width: 768px) { - .navbar { - border-radius: 4px; - } -} -@media (min-width: 768px) { - .navbar-header { - float: left; - } -} -.navbar-collapse { - padding-right: 15px; - padding-left: 15px; - overflow-x: visible; - -webkit-overflow-scrolling: touch; - border-top: 1px solid transparent; - -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1); - box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1); -} -.navbar-collapse.in { - overflow-y: auto; -} -@media (min-width: 768px) { - .navbar-collapse { - width: auto; - border-top: 0; - -webkit-box-shadow: none; - box-shadow: none; - } - .navbar-collapse.collapse { - display: block !important; - height: auto !important; - padding-bottom: 0; - overflow: visible !important; - } - .navbar-collapse.in { - overflow-y: visible; - } - .navbar-fixed-top .navbar-collapse, - .navbar-static-top .navbar-collapse, - .navbar-fixed-bottom .navbar-collapse { - padding-right: 0; - padding-left: 0; - } -} -.navbar-fixed-top .navbar-collapse, -.navbar-fixed-bottom .navbar-collapse { - max-height: 340px; -} -@media (max-width: 480px) and (orientation: landscape) { - .navbar-fixed-top .navbar-collapse, - .navbar-fixed-bottom .navbar-collapse { - max-height: 200px; - } -} -.container > .navbar-header, -.container-fluid > .navbar-header, -.container > .navbar-collapse, -.container-fluid > .navbar-collapse { - margin-right: -15px; - margin-left: -15px; -} -@media (min-width: 768px) { - .container > .navbar-header, - .container-fluid > .navbar-header, - .container > .navbar-collapse, - .container-fluid > .navbar-collapse { - margin-right: 0; - margin-left: 0; - } -} -.navbar-static-top { - z-index: 1000; - border-width: 0 0 1px; -} -@media (min-width: 768px) { - .navbar-static-top { - border-radius: 0; - } -} -.navbar-fixed-top, -.navbar-fixed-bottom { - position: fixed; - right: 0; - left: 0; - z-index: 1030; - -webkit-transform: translate3d(0, 0, 0); - -o-transform: translate3d(0, 0, 0); - transform: translate3d(0, 0, 0); -} -@media (min-width: 768px) { - .navbar-fixed-top, - .navbar-fixed-bottom { - border-radius: 0; - } -} -.navbar-fixed-top { - top: 0; - border-width: 0 0 1px; -} -.navbar-fixed-bottom { - bottom: 0; - margin-bottom: 0; - border-width: 1px 0 0; -} -.navbar-brand { - float: left; - height: 50px; - padding: 15px 15px; - font-size: 18px; - line-height: 20px; -} -.navbar-brand:hover, -.navbar-brand:focus { - text-decoration: none; -} -@media (min-width: 768px) { - .navbar > .container .navbar-brand, - .navbar > .container-fluid .navbar-brand { - margin-left: -15px; - } -} -.navbar-toggle { - position: relative; - float: right; - padding: 9px 10px; - margin-top: 8px; - margin-right: 15px; - margin-bottom: 8px; - background-color: transparent; - background-image: none; - border: 1px solid transparent; - border-radius: 4px; -} -.navbar-toggle:focus { - outline: 0; -} -.navbar-toggle .icon-bar { - display: block; - width: 22px; - height: 2px; - border-radius: 1px; -} -.navbar-toggle .icon-bar + .icon-bar { - margin-top: 4px; -} -@media (min-width: 768px) { - .navbar-toggle { - display: none; - } -} -.navbar-nav { - margin: 7.5px -15px; -} -.navbar-nav > li > a { - padding-top: 10px; - padding-bottom: 10px; - line-height: 20px; -} -@media (max-width: 767px) { - .navbar-nav .open .dropdown-menu { - position: static; - float: none; - width: auto; - margin-top: 0; - background-color: transparent; - border: 0; - -webkit-box-shadow: none; - box-shadow: none; - } - .navbar-nav .open .dropdown-menu > li > a, - .navbar-nav .open .dropdown-menu .dropdown-header { - padding: 5px 15px 5px 25px; - } - .navbar-nav .open .dropdown-menu > li > a { - line-height: 20px; - } - .navbar-nav .open .dropdown-menu > li > a:hover, - .navbar-nav .open .dropdown-menu > li > a:focus { - background-image: none; - } -} -@media (min-width: 768px) { - .navbar-nav { - float: left; - margin: 0; - } - .navbar-nav > li { - float: left; - } - .navbar-nav > li > a { - padding-top: 15px; - padding-bottom: 15px; - } - .navbar-nav.navbar-right:last-child { - margin-right: -15px; - } -} -@media (min-width: 768px) { - .navbar-left { - float: left !important; - } - .navbar-right { - float: right !important; - } -} -.navbar-form { - padding: 10px 15px; - margin-top: 8px; - margin-right: -15px; - margin-bottom: 8px; - margin-left: -15px; - border-top: 1px solid transparent; - border-bottom: 1px solid transparent; - -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 0 rgba(255, 255, 255, .1); - box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 0 rgba(255, 255, 255, .1); -} -@media (min-width: 768px) { - .navbar-form .form-group { - display: inline-block; - margin-bottom: 0; - vertical-align: middle; - } - .navbar-form .form-control { - display: inline-block; - width: auto; - vertical-align: middle; - } - .navbar-form .input-group { - display: inline-table; - vertical-align: middle; - } - .navbar-form .input-group .input-group-addon, - .navbar-form .input-group .input-group-btn, - .navbar-form .input-group .form-control { - width: auto; - } - .navbar-form .input-group > .form-control { - width: 100%; - } - .navbar-form .control-label { - margin-bottom: 0; - vertical-align: middle; - } - .navbar-form .radio, - .navbar-form .checkbox { - display: inline-block; - margin-top: 0; - margin-bottom: 0; - vertical-align: middle; - } - .navbar-form .radio label, - .navbar-form .checkbox label { - padding-left: 0; - } - .navbar-form .radio input[type="radio"], - .navbar-form .checkbox input[type="checkbox"] { - position: relative; - margin-left: 0; - } - .navbar-form .has-feedback .form-control-feedback { - top: 0; - } -} -@media (max-width: 767px) { - .navbar-form .form-group { - margin-bottom: 5px; - } -} -@media (min-width: 768px) { - .navbar-form { - width: auto; - padding-top: 0; - padding-bottom: 0; - margin-right: 0; - margin-left: 0; - border: 0; - -webkit-box-shadow: none; - box-shadow: none; - } - .navbar-form.navbar-right:last-child { - margin-right: -15px; - } -} -.navbar-nav > li > .dropdown-menu { - margin-top: 0; - border-top-left-radius: 0; - border-top-right-radius: 0; -} -.navbar-fixed-bottom .navbar-nav > li > .dropdown-menu { - border-bottom-right-radius: 0; - border-bottom-left-radius: 0; -} -.navbar-btn { - margin-top: 8px; - margin-bottom: 8px; -} -.navbar-btn.btn-sm { - margin-top: 10px; - margin-bottom: 10px; -} -.navbar-btn.btn-xs { - margin-top: 14px; - margin-bottom: 14px; -} -.navbar-text { - margin-top: 15px; - margin-bottom: 15px; -} -@media (min-width: 768px) { - .navbar-text { - float: left; - margin-right: 15px; - margin-left: 15px; - } - .navbar-text.navbar-right:last-child { - margin-right: 0; - } -} -.navbar-default { - background-color: #f8f8f8; - border-color: #e7e7e7; -} -.navbar-default .navbar-brand { - color: #777; -} -.navbar-default .navbar-brand:hover, -.navbar-default .navbar-brand:focus { - color: #5e5e5e; - background-color: transparent; -} -.navbar-default .navbar-text { - color: #777; -} -.navbar-default .navbar-nav > li > a { - color: #777; -} -.navbar-default .navbar-nav > li > a:hover, -.navbar-default .navbar-nav > li > a:focus { - color: #333; - background-color: transparent; -} -.navbar-default .navbar-nav > .active > a, -.navbar-default .navbar-nav > .active > a:hover, -.navbar-default .navbar-nav > .active > a:focus { - color: #555; - background-color: #e7e7e7; -} -.navbar-default .navbar-nav > .disabled > a, -.navbar-default .navbar-nav > .disabled > a:hover, -.navbar-default .navbar-nav > .disabled > a:focus { - color: #ccc; - background-color: transparent; -} -.navbar-default .navbar-toggle { - border-color: #ddd; -} -.navbar-default .navbar-toggle:hover, -.navbar-default .navbar-toggle:focus { - background-color: #ddd; -} -.navbar-default .navbar-toggle .icon-bar { - background-color: #888; -} -.navbar-default .navbar-collapse, -.navbar-default .navbar-form { - border-color: #e7e7e7; -} -.navbar-default .navbar-nav > .open > a, -.navbar-default .navbar-nav > .open > a:hover, -.navbar-default .navbar-nav > .open > a:focus { - color: #555; - background-color: #e7e7e7; -} -@media (max-width: 767px) { - .navbar-default .navbar-nav .open .dropdown-menu > li > a { - color: #777; - } - .navbar-default .navbar-nav .open .dropdown-menu > li > a:hover, - .navbar-default .navbar-nav .open .dropdown-menu > li > a:focus { - color: #333; - background-color: transparent; - } - .navbar-default .navbar-nav .open .dropdown-menu > .active > a, - .navbar-default .navbar-nav .open .dropdown-menu > .active > a:hover, - .navbar-default .navbar-nav .open .dropdown-menu > .active > a:focus { - color: #555; - background-color: #e7e7e7; - } - .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a, - .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:hover, - .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:focus { - color: #ccc; - background-color: transparent; - } -} -.navbar-default .navbar-link { - color: #777; -} -.navbar-default .navbar-link:hover { - color: #333; -} -.navbar-default .btn-link { - color: #777; -} -.navbar-default .btn-link:hover, -.navbar-default .btn-link:focus { - color: #333; -} -.navbar-default .btn-link[disabled]:hover, -fieldset[disabled] .navbar-default .btn-link:hover, -.navbar-default .btn-link[disabled]:focus, -fieldset[disabled] .navbar-default .btn-link:focus { - color: #ccc; -} -.navbar-inverse { - background-color: #222; - border-color: #080808; -} -.navbar-inverse .navbar-brand { - color: #777; -} -.navbar-inverse .navbar-brand:hover, -.navbar-inverse .navbar-brand:focus { - color: #fff; - background-color: transparent; -} -.navbar-inverse .navbar-text { - color: #777; -} -.navbar-inverse .navbar-nav > li > a { - color: #777; -} -.navbar-inverse .navbar-nav > li > a:hover, -.navbar-inverse .navbar-nav > li > a:focus { - color: #fff; - background-color: transparent; -} -.navbar-inverse .navbar-nav > .active > a, -.navbar-inverse .navbar-nav > .active > a:hover, -.navbar-inverse .navbar-nav > .active > a:focus { - color: #fff; - background-color: #080808; -} -.navbar-inverse .navbar-nav > .disabled > a, -.navbar-inverse .navbar-nav > .disabled > a:hover, -.navbar-inverse .navbar-nav > .disabled > a:focus { - color: #444; - background-color: transparent; -} -.navbar-inverse .navbar-toggle { - border-color: #333; -} -.navbar-inverse .navbar-toggle:hover, -.navbar-inverse .navbar-toggle:focus { - background-color: #333; -} -.navbar-inverse .navbar-toggle .icon-bar { - background-color: #fff; -} -.navbar-inverse .navbar-collapse, -.navbar-inverse .navbar-form { - border-color: #101010; -} -.navbar-inverse .navbar-nav > .open > a, -.navbar-inverse .navbar-nav > .open > a:hover, -.navbar-inverse .navbar-nav > .open > a:focus { - color: #fff; - background-color: #080808; -} -@media (max-width: 767px) { - .navbar-inverse .navbar-nav .open .dropdown-menu > .dropdown-header { - border-color: #080808; - } - .navbar-inverse .navbar-nav .open .dropdown-menu .divider { - background-color: #080808; - } - .navbar-inverse .navbar-nav .open .dropdown-menu > li > a { - color: #777; - } - .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:hover, - .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:focus { - color: #fff; - background-color: transparent; - } - .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a, - .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:hover, - .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:focus { - color: #fff; - background-color: #080808; - } - .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a, - .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:hover, - .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:focus { - color: #444; - background-color: transparent; - } -} -.navbar-inverse .navbar-link { - color: #777; -} -.navbar-inverse .navbar-link:hover { - color: #fff; -} -.navbar-inverse .btn-link { - color: #777; -} -.navbar-inverse .btn-link:hover, -.navbar-inverse .btn-link:focus { - color: #fff; -} -.navbar-inverse .btn-link[disabled]:hover, -fieldset[disabled] .navbar-inverse .btn-link:hover, -.navbar-inverse .btn-link[disabled]:focus, -fieldset[disabled] .navbar-inverse .btn-link:focus { - color: #444; -} -.breadcrumb { - padding: 8px 15px; - margin-bottom: 20px; - list-style: none; - background-color: #f5f5f5; - border-radius: 4px; -} -.breadcrumb > li { - display: inline-block; -} -.breadcrumb > li + li:before { - padding: 0 5px; - color: #ccc; - content: "/\00a0"; -} -.breadcrumb > .active { - color: #777; -} -.pagination { - display: inline-block; - padding-left: 0; - margin: 20px 0; - border-radius: 4px; -} -.pagination > li { - display: inline; -} -.pagination > li > a, -.pagination > li > span { - position: relative; - float: left; - padding: 6px 12px; - margin-left: -1px; - line-height: 1.42857143; - color: #428bca; - text-decoration: none; - background-color: #fff; - border: 1px solid #ddd; -} -.pagination > li:first-child > a, -.pagination > li:first-child > span { - margin-left: 0; - border-top-left-radius: 4px; - border-bottom-left-radius: 4px; -} -.pagination > li:last-child > a, -.pagination > li:last-child > span { - border-top-right-radius: 4px; - border-bottom-right-radius: 4px; -} -.pagination > li > a:hover, -.pagination > li > span:hover, -.pagination > li > a:focus, -.pagination > li > span:focus { - color: #2a6496; - background-color: #eee; - border-color: #ddd; -} -.pagination > .active > a, -.pagination > .active > span, -.pagination > .active > a:hover, -.pagination > .active > span:hover, -.pagination > .active > a:focus, -.pagination > .active > span:focus { - z-index: 2; - color: #fff; - cursor: default; - background-color: #428bca; - border-color: #428bca; -} -.pagination > .disabled > span, -.pagination > .disabled > span:hover, -.pagination > .disabled > span:focus, -.pagination > .disabled > a, -.pagination > .disabled > a:hover, -.pagination > .disabled > a:focus { - color: #777; - cursor: not-allowed; - background-color: #fff; - border-color: #ddd; -} -.pagination-lg > li > a, -.pagination-lg > li > span { - padding: 10px 16px; - font-size: 18px; -} -.pagination-lg > li:first-child > a, -.pagination-lg > li:first-child > span { - border-top-left-radius: 6px; - border-bottom-left-radius: 6px; -} -.pagination-lg > li:last-child > a, -.pagination-lg > li:last-child > span { - border-top-right-radius: 6px; - border-bottom-right-radius: 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-.pager .disabled > span { - color: #777; - cursor: not-allowed; - background-color: #fff; -} -.label { - display: inline; - padding: .2em .6em .3em; - font-size: 75%; - font-weight: bold; - line-height: 1; - color: #fff; - text-align: center; - white-space: nowrap; - vertical-align: baseline; - border-radius: .25em; -} -a.label:hover, -a.label:focus { - color: #fff; - text-decoration: none; - cursor: pointer; -} -.label:empty { - display: none; -} -.btn .label { - position: relative; - top: -1px; -} -.label-default { - background-color: #777; -} -.label-default[href]:hover, -.label-default[href]:focus { - background-color: #5e5e5e; -} -.label-primary { - background-color: #428bca; -} -.label-primary[href]:hover, -.label-primary[href]:focus { - background-color: #3071a9; -} -.label-success { - background-color: #5cb85c; -} -.label-success[href]:hover, -.label-success[href]:focus { - background-color: #449d44; -} -.label-info { - background-color: #5bc0de; -} -.label-info[href]:hover, 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-} -.alert-info .alert-link { - color: #245269; -} -.alert-warning { - color: #8a6d3b; - background-color: #fcf8e3; - border-color: #faebcc; -} -.alert-warning hr { - border-top-color: #f7e1b5; -} -.alert-warning .alert-link { - color: #66512c; -} -.alert-danger { - color: #a94442; - background-color: #f2dede; - border-color: #ebccd1; -} -.alert-danger hr { - border-top-color: #e4b9c0; -} -.alert-danger .alert-link { - color: #843534; -} -@-webkit-keyframes progress-bar-stripes { - from { - background-position: 40px 0; - } - to { - background-position: 0 0; - } -} -@-o-keyframes progress-bar-stripes { - from { - background-position: 40px 0; - } - to { - background-position: 0 0; - } -} -@keyframes progress-bar-stripes { - from { - background-position: 40px 0; - } - to { - background-position: 0 0; - } -} -.progress { - height: 20px; - margin-bottom: 20px; - overflow: hidden; - background-color: #f5f5f5; - border-radius: 4px; - -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, .1); - 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.table-responsive > .table-bordered > thead > tr > td:last-child, -.panel > .table-bordered > tbody > tr > td:last-child, -.panel > .table-responsive > .table-bordered > tbody > tr > td:last-child, -.panel > .table-bordered > tfoot > tr > td:last-child, -.panel > .table-responsive > .table-bordered > tfoot > tr > td:last-child { - border-right: 0; -} -.panel > .table-bordered > thead > tr:first-child > td, -.panel > .table-responsive > .table-bordered > thead > tr:first-child > td, -.panel > .table-bordered > tbody > tr:first-child > td, -.panel > .table-responsive > .table-bordered > tbody > tr:first-child > td, -.panel > .table-bordered > thead > tr:first-child > th, -.panel > .table-responsive > .table-bordered > thead > tr:first-child > th, -.panel > .table-bordered > tbody > tr:first-child > th, -.panel > .table-responsive > .table-bordered > tbody > tr:first-child > th { - border-bottom: 0; -} -.panel > .table-bordered > tbody > tr:last-child > td, -.panel > .table-responsive > .table-bordered > tbody > tr:last-child > td, -.panel > .table-bordered > tfoot > tr:last-child > td, -.panel > .table-responsive > .table-bordered > tfoot > tr:last-child > td, -.panel > .table-bordered > tbody > tr:last-child > th, -.panel > .table-responsive > .table-bordered > tbody > tr:last-child > th, -.panel > .table-bordered > tfoot > tr:last-child > th, -.panel > .table-responsive > .table-bordered > tfoot > tr:last-child > th { - border-bottom: 0; -} -.panel > .table-responsive { - margin-bottom: 0; - border: 0; -} -.panel-group { - margin-bottom: 20px; -} -.panel-group .panel { - margin-bottom: 0; - border-radius: 4px; -} -.panel-group .panel + .panel { - margin-top: 5px; -} -.panel-group .panel-heading { - border-bottom: 0; -} -.panel-group .panel-heading + .panel-collapse > .panel-body { - border-top: 1px solid #ddd; -} -.panel-group .panel-footer { - border-top: 0; -} -.panel-group .panel-footer + .panel-collapse .panel-body { - border-bottom: 1px solid #ddd; -} 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-.carousel-control:hover, -.carousel-control:focus { - color: #fff; - text-decoration: none; - filter: alpha(opacity=90); - outline: 0; - opacity: .9; -} -.carousel-control .icon-prev, -.carousel-control .icon-next, -.carousel-control .glyphicon-chevron-left, -.carousel-control .glyphicon-chevron-right { - position: absolute; - top: 50%; - z-index: 5; - display: inline-block; -} -.carousel-control .icon-prev, -.carousel-control .glyphicon-chevron-left { - left: 50%; - margin-left: -10px; -} -.carousel-control .icon-next, -.carousel-control .glyphicon-chevron-right { - right: 50%; - margin-right: -10px; -} -.carousel-control .icon-prev, -.carousel-control .icon-next { - width: 20px; - height: 20px; - margin-top: -10px; - font-family: serif; -} -.carousel-control .icon-prev:before { - content: '\2039'; -} -.carousel-control .icon-next:before { - content: '\203a'; -} -.carousel-indicators { - position: absolute; - bottom: 10px; - left: 50%; - z-index: 15; - width: 60%; - padding-left: 0; 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normalize.css v3.0.1 | MIT License | git.io/normalize */\n\n//\n// 1. Set default font family to sans-serif.\n// 2. Prevent iOS text size adjust after orientation change, without disabling\n// user zoom.\n//\n\nhtml {\n font-family: sans-serif; // 1\n -ms-text-size-adjust: 100%; // 2\n -webkit-text-size-adjust: 100%; // 2\n}\n\n//\n// Remove default margin.\n//\n\nbody {\n margin: 0;\n}\n\n// HTML5 display definitions\n// ==========================================================================\n\n//\n// Correct `block` display not defined for any HTML5 element in IE 8/9.\n// Correct `block` display not defined for `details` or `summary` in IE 10/11 and Firefox.\n// Correct `block` display not defined for `main` in IE 11.\n//\n\narticle,\naside,\ndetails,\nfigcaption,\nfigure,\nfooter,\nheader,\nhgroup,\nmain,\nnav,\nsection,\nsummary {\n display: block;\n}\n\n//\n// 1. Correct `inline-block` display not defined in IE 8/9.\n// 2. Normalize vertical alignment of `progress` in Chrome, Firefox, and Opera.\n//\n\naudio,\ncanvas,\nprogress,\nvideo {\n display: inline-block; // 1\n vertical-align: baseline; // 2\n}\n\n//\n// Prevent modern browsers from displaying `audio` without controls.\n// Remove excess height in iOS 5 devices.\n//\n\naudio:not([controls]) {\n display: none;\n height: 0;\n}\n\n//\n// Address `[hidden]` styling not present in IE 8/9/10.\n// Hide the `template` element in IE 8/9/11, Safari, and Firefox < 22.\n//\n\n[hidden],\ntemplate {\n display: none;\n}\n\n// Links\n// ==========================================================================\n\n//\n// Remove the gray background color from active links in IE 10.\n//\n\na {\n background: transparent;\n}\n\n//\n// Improve readability when focused and also mouse hovered in all browsers.\n//\n\na:active,\na:hover {\n outline: 0;\n}\n\n// Text-level semantics\n// ==========================================================================\n\n//\n// Address styling not present in IE 8/9/10/11, Safari, and Chrome.\n//\n\nabbr[title] {\n border-bottom: 1px dotted;\n}\n\n//\n// Address style set to `bolder` in Firefox 4+, Safari, and Chrome.\n//\n\nb,\nstrong {\n font-weight: bold;\n}\n\n//\n// Address styling not present in Safari and Chrome.\n//\n\ndfn {\n font-style: italic;\n}\n\n//\n// Address variable `h1` font-size and margin within `section` and `article`\n// contexts in Firefox 4+, Safari, and Chrome.\n//\n\nh1 {\n font-size: 2em;\n margin: 0.67em 0;\n}\n\n//\n// Address styling not present in IE 8/9.\n//\n\nmark {\n background: #ff0;\n color: #000;\n}\n\n//\n// Address inconsistent and variable font size in all browsers.\n//\n\nsmall {\n font-size: 80%;\n}\n\n//\n// Prevent `sub` and `sup` affecting `line-height` in all browsers.\n//\n\nsub,\nsup {\n font-size: 75%;\n line-height: 0;\n position: relative;\n vertical-align: baseline;\n}\n\nsup {\n top: -0.5em;\n}\n\nsub {\n bottom: -0.25em;\n}\n\n// Embedded content\n// ==========================================================================\n\n//\n// Remove border when inside `a` element in IE 8/9/10.\n//\n\nimg {\n border: 0;\n}\n\n//\n// Correct overflow not hidden in IE 9/10/11.\n//\n\nsvg:not(:root) {\n overflow: hidden;\n}\n\n// Grouping content\n// ==========================================================================\n\n//\n// Address margin not present in IE 8/9 and Safari.\n//\n\nfigure {\n margin: 1em 40px;\n}\n\n//\n// Address differences between Firefox and other browsers.\n//\n\nhr {\n -moz-box-sizing: content-box;\n box-sizing: content-box;\n height: 0;\n}\n\n//\n// Contain overflow in all browsers.\n//\n\npre {\n overflow: auto;\n}\n\n//\n// Address odd `em`-unit font size rendering in all browsers.\n//\n\ncode,\nkbd,\npre,\nsamp {\n font-family: monospace, monospace;\n font-size: 1em;\n}\n\n// Forms\n// ==========================================================================\n\n//\n// Known limitation: by default, Chrome and Safari on OS X allow very limited\n// styling of `select`, unless a `border` property is set.\n//\n\n//\n// 1. Correct color not being inherited.\n// Known issue: affects color of disabled elements.\n// 2. Correct font properties not being inherited.\n// 3. Address margins set differently in Firefox 4+, Safari, and Chrome.\n//\n\nbutton,\ninput,\noptgroup,\nselect,\ntextarea {\n color: inherit; // 1\n font: inherit; // 2\n margin: 0; // 3\n}\n\n//\n// Address `overflow` set to `hidden` in IE 8/9/10/11.\n//\n\nbutton {\n overflow: visible;\n}\n\n//\n// Address inconsistent `text-transform` inheritance for `button` and `select`.\n// All other form control elements do not inherit `text-transform` values.\n// Correct `button` style inheritance in Firefox, IE 8/9/10/11, and Opera.\n// Correct `select` style inheritance in Firefox.\n//\n\nbutton,\nselect {\n text-transform: none;\n}\n\n//\n// 1. Avoid the WebKit bug in Android 4.0.* where (2) destroys native `audio`\n// and `video` controls.\n// 2. Correct inability to style clickable `input` types in iOS.\n// 3. Improve usability and consistency of cursor style between image-type\n// `input` and others.\n//\n\nbutton,\nhtml input[type=\"button\"], // 1\ninput[type=\"reset\"],\ninput[type=\"submit\"] {\n -webkit-appearance: button; // 2\n cursor: pointer; // 3\n}\n\n//\n// Re-set default cursor for disabled elements.\n//\n\nbutton[disabled],\nhtml input[disabled] {\n cursor: default;\n}\n\n//\n// Remove inner padding and border in Firefox 4+.\n//\n\nbutton::-moz-focus-inner,\ninput::-moz-focus-inner {\n border: 0;\n padding: 0;\n}\n\n//\n// Address Firefox 4+ setting `line-height` on `input` using `!important` in\n// the UA stylesheet.\n//\n\ninput {\n line-height: normal;\n}\n\n//\n// It's recommended that you don't attempt to style these elements.\n// Firefox's implementation doesn't respect box-sizing, padding, or width.\n//\n// 1. Address box sizing set to `content-box` in IE 8/9/10.\n// 2. Remove excess padding in IE 8/9/10.\n//\n\ninput[type=\"checkbox\"],\ninput[type=\"radio\"] {\n box-sizing: border-box; // 1\n padding: 0; // 2\n}\n\n//\n// Fix the cursor style for Chrome's increment/decrement buttons. For certain\n// `font-size` values of the `input`, it causes the cursor style of the\n// decrement button to change from `default` to `text`.\n//\n\ninput[type=\"number\"]::-webkit-inner-spin-button,\ninput[type=\"number\"]::-webkit-outer-spin-button {\n height: auto;\n}\n\n//\n// 1. Address `appearance` set to `searchfield` in Safari and Chrome.\n// 2. Address `box-sizing` set to `border-box` in Safari and Chrome\n// (include `-moz` to future-proof).\n//\n\ninput[type=\"search\"] {\n -webkit-appearance: textfield; // 1\n -moz-box-sizing: content-box;\n -webkit-box-sizing: content-box; // 2\n box-sizing: content-box;\n}\n\n//\n// Remove inner padding and search cancel button in Safari and Chrome on OS X.\n// Safari (but not Chrome) clips the cancel button when the search input has\n// padding (and `textfield` appearance).\n//\n\ninput[type=\"search\"]::-webkit-search-cancel-button,\ninput[type=\"search\"]::-webkit-search-decoration {\n -webkit-appearance: none;\n}\n\n//\n// Define consistent border, margin, and padding.\n//\n\nfieldset {\n border: 1px solid #c0c0c0;\n margin: 0 2px;\n padding: 0.35em 0.625em 0.75em;\n}\n\n//\n// 1. Correct `color` not being inherited in IE 8/9/10/11.\n// 2. Remove padding so people aren't caught out if they zero out fieldsets.\n//\n\nlegend {\n border: 0; // 1\n padding: 0; // 2\n}\n\n//\n// Remove default vertical scrollbar in IE 8/9/10/11.\n//\n\ntextarea {\n overflow: auto;\n}\n\n//\n// Don't inherit the `font-weight` (applied by a rule above).\n// NOTE: the default cannot safely be changed in Chrome and Safari on OS X.\n//\n\noptgroup {\n font-weight: bold;\n}\n\n// Tables\n// ==========================================================================\n\n//\n// Remove most spacing between table cells.\n//\n\ntable {\n border-collapse: collapse;\n border-spacing: 0;\n}\n\ntd,\nth {\n padding: 0;\n}\n","//\n// Basic print styles\n// --------------------------------------------------\n// Source: https://github.com/h5bp/html5-boilerplate/blob/master/css/main.css\n\n@media print {\n\n * {\n text-shadow: none !important;\n color: #000 !important; // Black prints faster: h5bp.com/s\n background: transparent !important;\n box-shadow: none !important;\n }\n\n a,\n a:visited {\n text-decoration: underline;\n }\n\n a[href]:after {\n content: \" (\" attr(href) \")\";\n }\n\n abbr[title]:after {\n content: \" (\" attr(title) \")\";\n }\n\n // Don't show links for images, or javascript/internal links\n a[href^=\"javascript:\"]:after,\n a[href^=\"#\"]:after {\n content: \"\";\n }\n\n pre,\n blockquote {\n border: 1px solid #999;\n page-break-inside: avoid;\n }\n\n thead {\n display: table-header-group; // h5bp.com/t\n }\n\n tr,\n img {\n page-break-inside: avoid;\n }\n\n img {\n max-width: 100% !important;\n }\n\n p,\n h2,\n h3 {\n orphans: 3;\n widows: 3;\n }\n\n h2,\n h3 {\n page-break-after: avoid;\n }\n\n // Chrome (OSX) fix for https://github.com/twbs/bootstrap/issues/11245\n // Once fixed, we can just straight up remove this.\n select {\n background: #fff !important;\n }\n\n // Bootstrap components\n .navbar {\n display: none;\n }\n .table {\n td,\n th {\n background-color: #fff !important;\n }\n }\n .btn,\n .dropup > .btn {\n > .caret {\n border-top-color: #000 !important;\n }\n }\n .label {\n border: 1px solid #000;\n }\n\n .table {\n border-collapse: collapse !important;\n }\n .table-bordered {\n th,\n td {\n border: 1px solid #ddd !important;\n }\n }\n\n}\n","//\n// Glyphicons for Bootstrap\n//\n// Since icons are fonts, they can be placed anywhere text is placed and are\n// thus automatically sized to match the surrounding child. To use, create an\n// inline element with the appropriate classes, like so:\n//\n// Star\n\n// Import the fonts\n@font-face {\n font-family: 'Glyphicons Halflings';\n src: url('@{icon-font-path}@{icon-font-name}.eot');\n src: url('@{icon-font-path}@{icon-font-name}.eot?#iefix') format('embedded-opentype'),\n url('@{icon-font-path}@{icon-font-name}.woff') format('woff'),\n url('@{icon-font-path}@{icon-font-name}.ttf') format('truetype'),\n url('@{icon-font-path}@{icon-font-name}.svg#@{icon-font-svg-id}') format('svg');\n}\n\n// Catchall baseclass\n.glyphicon {\n position: relative;\n top: 1px;\n display: inline-block;\n font-family: 'Glyphicons Halflings';\n font-style: normal;\n font-weight: normal;\n line-height: 1;\n -webkit-font-smoothing: antialiased;\n -moz-osx-font-smoothing: grayscale;\n}\n\n// Individual icons\n.glyphicon-asterisk { &:before { content: \"\\2a\"; } }\n.glyphicon-plus { &:before { content: \"\\2b\"; } }\n.glyphicon-euro { &:before { content: \"\\20ac\"; } }\n.glyphicon-minus { &:before { content: \"\\2212\"; } }\n.glyphicon-cloud { &:before { content: \"\\2601\"; } }\n.glyphicon-envelope { &:before { content: \"\\2709\"; } }\n.glyphicon-pencil { &:before { content: \"\\270f\"; } }\n.glyphicon-glass { &:before { content: \"\\e001\"; } }\n.glyphicon-music { &:before { content: \"\\e002\"; } }\n.glyphicon-search { &:before { content: \"\\e003\"; } }\n.glyphicon-heart { &:before { content: \"\\e005\"; } }\n.glyphicon-star { &:before { content: \"\\e006\"; } }\n.glyphicon-star-empty { &:before { content: \"\\e007\"; } }\n.glyphicon-user { &:before { content: \"\\e008\"; } }\n.glyphicon-film { &:before { content: \"\\e009\"; } }\n.glyphicon-th-large { &:before { content: \"\\e010\"; } }\n.glyphicon-th { &:before { content: \"\\e011\"; } }\n.glyphicon-th-list { &:before { content: \"\\e012\"; } }\n.glyphicon-ok { &:before { content: \"\\e013\"; } }\n.glyphicon-remove { &:before { content: \"\\e014\"; } }\n.glyphicon-zoom-in { &:before { content: \"\\e015\"; } }\n.glyphicon-zoom-out { &:before { content: \"\\e016\"; } }\n.glyphicon-off { &:before { content: \"\\e017\"; } }\n.glyphicon-signal { &:before { content: \"\\e018\"; } }\n.glyphicon-cog { &:before { content: \"\\e019\"; } }\n.glyphicon-trash { &:before { content: \"\\e020\"; } }\n.glyphicon-home { &:before { content: \"\\e021\"; } }\n.glyphicon-file { &:before { content: \"\\e022\"; } }\n.glyphicon-time { &:before { content: \"\\e023\"; } }\n.glyphicon-road { &:before { content: \"\\e024\"; } }\n.glyphicon-download-alt { &:before { content: \"\\e025\"; } }\n.glyphicon-download { &:before { content: \"\\e026\"; } }\n.glyphicon-upload { &:before { content: \"\\e027\"; } }\n.glyphicon-inbox { &:before { content: \"\\e028\"; } }\n.glyphicon-play-circle { &:before { content: \"\\e029\"; } }\n.glyphicon-repeat { &:before { content: \"\\e030\"; } }\n.glyphicon-refresh { &:before { content: \"\\e031\"; } }\n.glyphicon-list-alt { &:before { content: \"\\e032\"; } }\n.glyphicon-lock { &:before { content: \"\\e033\"; } }\n.glyphicon-flag { &:before { content: \"\\e034\"; } }\n.glyphicon-headphones { &:before { content: \"\\e035\"; } }\n.glyphicon-volume-off { &:before { content: \"\\e036\"; } }\n.glyphicon-volume-down { &:before { content: \"\\e037\"; } }\n.glyphicon-volume-up { &:before { content: \"\\e038\"; } }\n.glyphicon-qrcode { &:before { content: \"\\e039\"; } }\n.glyphicon-barcode { &:before { content: \"\\e040\"; } }\n.glyphicon-tag { &:before { content: \"\\e041\"; } }\n.glyphicon-tags { &:before { content: \"\\e042\"; } }\n.glyphicon-book { &:before { content: \"\\e043\"; } }\n.glyphicon-bookmark { &:before { content: \"\\e044\"; } }\n.glyphicon-print { &:before { content: \"\\e045\"; } }\n.glyphicon-camera { &:before { content: \"\\e046\"; } }\n.glyphicon-font { &:before { content: \"\\e047\"; } }\n.glyphicon-bold { &:before { content: \"\\e048\"; } }\n.glyphicon-italic { &:before { content: \"\\e049\"; } }\n.glyphicon-text-height { &:before { content: \"\\e050\"; } }\n.glyphicon-text-width { &:before { content: \"\\e051\"; } }\n.glyphicon-align-left { &:before { content: \"\\e052\"; } }\n.glyphicon-align-center { &:before { content: \"\\e053\"; } }\n.glyphicon-align-right { &:before { content: \"\\e054\"; } }\n.glyphicon-align-justify { &:before { content: \"\\e055\"; } }\n.glyphicon-list { &:before { content: \"\\e056\"; } }\n.glyphicon-indent-left { &:before { content: \"\\e057\"; } }\n.glyphicon-indent-right { &:before { content: \"\\e058\"; } }\n.glyphicon-facetime-video { &:before { content: \"\\e059\"; } }\n.glyphicon-picture { &:before { content: \"\\e060\"; } }\n.glyphicon-map-marker { &:before { content: \"\\e062\"; } }\n.glyphicon-adjust { &:before { content: \"\\e063\"; } }\n.glyphicon-tint { &:before { content: \"\\e064\"; } }\n.glyphicon-edit { &:before { content: \"\\e065\"; } }\n.glyphicon-share { &:before { content: \"\\e066\"; } }\n.glyphicon-check { &:before { content: \"\\e067\"; } }\n.glyphicon-move { &:before { content: \"\\e068\"; } }\n.glyphicon-step-backward { &:before { content: \"\\e069\"; } }\n.glyphicon-fast-backward { &:before { content: \"\\e070\"; } }\n.glyphicon-backward { &:before { content: \"\\e071\"; } }\n.glyphicon-play { &:before { content: \"\\e072\"; } }\n.glyphicon-pause { &:before { content: \"\\e073\"; } }\n.glyphicon-stop { &:before { content: \"\\e074\"; } }\n.glyphicon-forward { &:before { content: \"\\e075\"; } }\n.glyphicon-fast-forward { &:before { content: \"\\e076\"; } }\n.glyphicon-step-forward { &:before { content: \"\\e077\"; } }\n.glyphicon-eject { &:before { content: \"\\e078\"; } }\n.glyphicon-chevron-left { &:before { content: \"\\e079\"; } }\n.glyphicon-chevron-right { &:before { content: \"\\e080\"; } }\n.glyphicon-plus-sign { &:before { content: \"\\e081\"; } }\n.glyphicon-minus-sign { &:before { content: \"\\e082\"; } }\n.glyphicon-remove-sign { &:before { content: \"\\e083\"; } }\n.glyphicon-ok-sign { &:before { content: \"\\e084\"; } }\n.glyphicon-question-sign { &:before { content: \"\\e085\"; } }\n.glyphicon-info-sign { &:before { content: \"\\e086\"; } }\n.glyphicon-screenshot { &:before { content: \"\\e087\"; } }\n.glyphicon-remove-circle { &:before { content: \"\\e088\"; } }\n.glyphicon-ok-circle { &:before { content: \"\\e089\"; } }\n.glyphicon-ban-circle { &:before { content: \"\\e090\"; } }\n.glyphicon-arrow-left { &:before { content: \"\\e091\"; } }\n.glyphicon-arrow-right { &:before { content: \"\\e092\"; } }\n.glyphicon-arrow-up { &:before { content: \"\\e093\"; } }\n.glyphicon-arrow-down { &:before { content: \"\\e094\"; } }\n.glyphicon-share-alt { &:before { content: \"\\e095\"; } }\n.glyphicon-resize-full { &:before { content: \"\\e096\"; } }\n.glyphicon-resize-small { &:before { content: \"\\e097\"; } }\n.glyphicon-exclamation-sign { &:before { content: \"\\e101\"; } }\n.glyphicon-gift { &:before { content: \"\\e102\"; } }\n.glyphicon-leaf { &:before { content: \"\\e103\"; } }\n.glyphicon-fire { &:before { content: \"\\e104\"; } }\n.glyphicon-eye-open { &:before { content: \"\\e105\"; } }\n.glyphicon-eye-close { &:before { content: \"\\e106\"; } }\n.glyphicon-warning-sign { &:before { content: \"\\e107\"; } }\n.glyphicon-plane { &:before { content: \"\\e108\"; } }\n.glyphicon-calendar { &:before { content: \"\\e109\"; } }\n.glyphicon-random { &:before { content: \"\\e110\"; } }\n.glyphicon-comment { &:before { content: \"\\e111\"; } }\n.glyphicon-magnet { &:before { content: \"\\e112\"; } }\n.glyphicon-chevron-up { &:before { content: \"\\e113\"; } }\n.glyphicon-chevron-down { &:before { content: \"\\e114\"; } }\n.glyphicon-retweet { &:before { content: \"\\e115\"; } }\n.glyphicon-shopping-cart { &:before { content: \"\\e116\"; } }\n.glyphicon-folder-close { &:before { content: \"\\e117\"; } }\n.glyphicon-folder-open { &:before { content: \"\\e118\"; } }\n.glyphicon-resize-vertical { &:before { content: \"\\e119\"; } }\n.glyphicon-resize-horizontal { &:before { content: \"\\e120\"; } }\n.glyphicon-hdd { &:before { content: \"\\e121\"; } }\n.glyphicon-bullhorn { &:before { content: \"\\e122\"; } }\n.glyphicon-bell { &:before { content: \"\\e123\"; } }\n.glyphicon-certificate { &:before { content: \"\\e124\"; } }\n.glyphicon-thumbs-up { &:before { content: \"\\e125\"; } }\n.glyphicon-thumbs-down { &:before { content: \"\\e126\"; } }\n.glyphicon-hand-right { &:before { content: \"\\e127\"; } }\n.glyphicon-hand-left { &:before { content: \"\\e128\"; } }\n.glyphicon-hand-up { &:before { content: \"\\e129\"; } }\n.glyphicon-hand-down { &:before { content: \"\\e130\"; } }\n.glyphicon-circle-arrow-right { &:before { content: \"\\e131\"; } }\n.glyphicon-circle-arrow-left { &:before { content: \"\\e132\"; } }\n.glyphicon-circle-arrow-up { &:before { content: \"\\e133\"; } }\n.glyphicon-circle-arrow-down { &:before { content: \"\\e134\"; } }\n.glyphicon-globe { &:before { content: \"\\e135\"; } }\n.glyphicon-wrench { &:before { content: \"\\e136\"; } }\n.glyphicon-tasks { &:before { content: \"\\e137\"; } }\n.glyphicon-filter { &:before { content: \"\\e138\"; } }\n.glyphicon-briefcase { &:before { content: \"\\e139\"; } }\n.glyphicon-fullscreen { &:before { content: \"\\e140\"; } }\n.glyphicon-dashboard { &:before { content: \"\\e141\"; } }\n.glyphicon-paperclip { &:before { content: \"\\e142\"; } }\n.glyphicon-heart-empty { &:before { content: \"\\e143\"; } }\n.glyphicon-link { &:before { content: \"\\e144\"; } }\n.glyphicon-phone { &:before { content: \"\\e145\"; } }\n.glyphicon-pushpin { &:before { content: \"\\e146\"; } }\n.glyphicon-usd { &:before { content: \"\\e148\"; } }\n.glyphicon-gbp { &:before { content: \"\\e149\"; } }\n.glyphicon-sort { &:before { content: \"\\e150\"; } }\n.glyphicon-sort-by-alphabet { &:before { content: \"\\e151\"; } }\n.glyphicon-sort-by-alphabet-alt { &:before { content: \"\\e152\"; } }\n.glyphicon-sort-by-order { &:before { content: \"\\e153\"; } }\n.glyphicon-sort-by-order-alt { &:before { content: \"\\e154\"; } }\n.glyphicon-sort-by-attributes { &:before { content: \"\\e155\"; } }\n.glyphicon-sort-by-attributes-alt { &:before { content: \"\\e156\"; } }\n.glyphicon-unchecked { &:before { content: \"\\e157\"; } }\n.glyphicon-expand { &:before { content: \"\\e158\"; } }\n.glyphicon-collapse-down { &:before { content: \"\\e159\"; } }\n.glyphicon-collapse-up { &:before { content: \"\\e160\"; } }\n.glyphicon-log-in { &:before { content: \"\\e161\"; } }\n.glyphicon-flash { &:before { content: \"\\e162\"; } }\n.glyphicon-log-out { &:before { content: \"\\e163\"; } }\n.glyphicon-new-window { &:before { content: \"\\e164\"; } }\n.glyphicon-record { &:before { content: \"\\e165\"; } }\n.glyphicon-save { &:before { content: \"\\e166\"; } }\n.glyphicon-open { &:before { content: \"\\e167\"; } }\n.glyphicon-saved { &:before { content: \"\\e168\"; } }\n.glyphicon-import { &:before { content: \"\\e169\"; } }\n.glyphicon-export { &:before { content: \"\\e170\"; } }\n.glyphicon-send { &:before { content: \"\\e171\"; } }\n.glyphicon-floppy-disk { &:before { content: \"\\e172\"; } }\n.glyphicon-floppy-saved { &:before { content: \"\\e173\"; } }\n.glyphicon-floppy-remove { &:before { content: \"\\e174\"; } }\n.glyphicon-floppy-save { &:before { content: \"\\e175\"; } }\n.glyphicon-floppy-open { &:before { content: \"\\e176\"; } }\n.glyphicon-credit-card { &:before { content: \"\\e177\"; } }\n.glyphicon-transfer { &:before { content: \"\\e178\"; } }\n.glyphicon-cutlery { &:before { content: \"\\e179\"; } }\n.glyphicon-header { &:before { content: \"\\e180\"; } }\n.glyphicon-compressed { &:before { content: \"\\e181\"; } }\n.glyphicon-earphone { &:before { content: \"\\e182\"; } }\n.glyphicon-phone-alt { &:before { content: \"\\e183\"; } }\n.glyphicon-tower { &:before { content: \"\\e184\"; } }\n.glyphicon-stats { &:before { content: \"\\e185\"; } }\n.glyphicon-sd-video { &:before { content: \"\\e186\"; } }\n.glyphicon-hd-video { &:before { content: \"\\e187\"; } }\n.glyphicon-subtitles { &:before { content: \"\\e188\"; } }\n.glyphicon-sound-stereo { &:before { content: \"\\e189\"; } }\n.glyphicon-sound-dolby { &:before { content: \"\\e190\"; } }\n.glyphicon-sound-5-1 { &:before { content: \"\\e191\"; } }\n.glyphicon-sound-6-1 { &:before { content: \"\\e192\"; } }\n.glyphicon-sound-7-1 { &:before { content: \"\\e193\"; } }\n.glyphicon-copyright-mark { &:before { content: \"\\e194\"; } }\n.glyphicon-registration-mark { &:before { content: \"\\e195\"; } }\n.glyphicon-cloud-download { &:before { content: \"\\e197\"; } }\n.glyphicon-cloud-upload { &:before { content: \"\\e198\"; } }\n.glyphicon-tree-conifer { &:before { content: \"\\e199\"; } }\n.glyphicon-tree-deciduous { &:before { content: \"\\e200\"; } }\n","//\n// Scaffolding\n// --------------------------------------------------\n\n\n// Reset the box-sizing\n//\n// Heads up! This reset may cause conflicts with some third-party widgets.\n// For recommendations on resolving such conflicts, see\n// http://getbootstrap.com/getting-started/#third-box-sizing\n* {\n .box-sizing(border-box);\n}\n*:before,\n*:after {\n .box-sizing(border-box);\n}\n\n\n// Body reset\n\nhtml {\n font-size: 10px;\n -webkit-tap-highlight-color: rgba(0,0,0,0);\n}\n\nbody {\n font-family: @font-family-base;\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @text-color;\n background-color: @body-bg;\n}\n\n// Reset fonts for relevant elements\ninput,\nbutton,\nselect,\ntextarea {\n font-family: inherit;\n font-size: inherit;\n line-height: inherit;\n}\n\n\n// Links\n\na {\n color: @link-color;\n text-decoration: none;\n\n &:hover,\n &:focus {\n color: @link-hover-color;\n text-decoration: underline;\n }\n\n &:focus {\n .tab-focus();\n }\n}\n\n\n// Figures\n//\n// We reset this here because previously Normalize had no `figure` margins. This\n// ensures we don't break anyone's use of the element.\n\nfigure {\n margin: 0;\n}\n\n\n// Images\n\nimg {\n vertical-align: middle;\n}\n\n// Responsive images (ensure images don't scale beyond their parents)\n.img-responsive {\n .img-responsive();\n}\n\n// Rounded corners\n.img-rounded {\n border-radius: @border-radius-large;\n}\n\n// Image thumbnails\n//\n// Heads up! This is mixin-ed into thumbnails.less for `.thumbnail`.\n.img-thumbnail {\n padding: @thumbnail-padding;\n line-height: @line-height-base;\n background-color: @thumbnail-bg;\n border: 1px solid @thumbnail-border;\n border-radius: @thumbnail-border-radius;\n .transition(all .2s ease-in-out);\n\n // Keep them at most 100% wide\n .img-responsive(inline-block);\n}\n\n// Perfect circle\n.img-circle {\n border-radius: 50%; // set radius in percents\n}\n\n\n// Horizontal rules\n\nhr {\n margin-top: @line-height-computed;\n margin-bottom: @line-height-computed;\n border: 0;\n border-top: 1px solid @hr-border;\n}\n\n\n// Only display content to screen readers\n//\n// See: http://a11yproject.com/posts/how-to-hide-content/\n\n.sr-only {\n position: absolute;\n width: 1px;\n height: 1px;\n margin: -1px;\n padding: 0;\n overflow: hidden;\n clip: rect(0,0,0,0);\n border: 0;\n}\n\n// Use in conjunction with .sr-only to only display content when it's focused.\n// Useful for \"Skip to main content\" links; see http://www.w3.org/TR/2013/NOTE-WCAG20-TECHS-20130905/G1\n// Credit: HTML5 Boilerplate\n\n.sr-only-focusable {\n &:active,\n &:focus {\n position: static;\n width: auto;\n height: auto;\n margin: 0;\n overflow: visible;\n clip: auto;\n }\n}\n","// Vendor Prefixes\n//\n// All vendor mixins are deprecated as of v3.2.0 due to the introduction of\n// Autoprefixer in our Gruntfile. They will be removed in v4.\n\n// - Animations\n// - Backface visibility\n// - Box shadow\n// - Box sizing\n// - Content columns\n// - Hyphens\n// - Placeholder text\n// - Transformations\n// - Transitions\n// - User Select\n\n\n// Animations\n.animation(@animation) {\n -webkit-animation: @animation;\n -o-animation: @animation;\n animation: @animation;\n}\n.animation-name(@name) {\n -webkit-animation-name: @name;\n animation-name: @name;\n}\n.animation-duration(@duration) {\n -webkit-animation-duration: @duration;\n animation-duration: @duration;\n}\n.animation-timing-function(@timing-function) {\n -webkit-animation-timing-function: @timing-function;\n animation-timing-function: @timing-function;\n}\n.animation-delay(@delay) {\n -webkit-animation-delay: @delay;\n animation-delay: @delay;\n}\n.animation-iteration-count(@iteration-count) {\n -webkit-animation-iteration-count: @iteration-count;\n animation-iteration-count: @iteration-count;\n}\n.animation-direction(@direction) {\n -webkit-animation-direction: @direction;\n animation-direction: @direction;\n}\n.animation-fill-mode(@fill-mode) {\n -webkit-animation-fill-mode: @fill-mode;\n animation-fill-mode: @fill-mode;\n}\n\n// Backface visibility\n// Prevent browsers from flickering when using CSS 3D transforms.\n// Default value is `visible`, but can be changed to `hidden`\n\n.backface-visibility(@visibility){\n -webkit-backface-visibility: @visibility;\n -moz-backface-visibility: @visibility;\n backface-visibility: @visibility;\n}\n\n// Drop shadows\n//\n// Note: Deprecated `.box-shadow()` as of v3.1.0 since all of Bootstrap's\n// supported browsers that have box shadow capabilities now support it.\n\n.box-shadow(@shadow) {\n -webkit-box-shadow: @shadow; // iOS <4.3 & Android <4.1\n box-shadow: @shadow;\n}\n\n// Box sizing\n.box-sizing(@boxmodel) {\n -webkit-box-sizing: @boxmodel;\n -moz-box-sizing: @boxmodel;\n box-sizing: @boxmodel;\n}\n\n// CSS3 Content Columns\n.content-columns(@column-count; @column-gap: @grid-gutter-width) {\n -webkit-column-count: @column-count;\n -moz-column-count: @column-count;\n column-count: @column-count;\n -webkit-column-gap: @column-gap;\n -moz-column-gap: @column-gap;\n column-gap: @column-gap;\n}\n\n// Optional hyphenation\n.hyphens(@mode: auto) {\n word-wrap: break-word;\n -webkit-hyphens: @mode;\n -moz-hyphens: @mode;\n -ms-hyphens: @mode; // IE10+\n -o-hyphens: @mode;\n hyphens: @mode;\n}\n\n// Placeholder text\n.placeholder(@color: @input-color-placeholder) {\n &::-moz-placeholder { color: @color; // Firefox\n opacity: 1; } // See https://github.com/twbs/bootstrap/pull/11526\n &:-ms-input-placeholder { color: @color; } // Internet Explorer 10+\n &::-webkit-input-placeholder { color: @color; } // Safari and Chrome\n}\n\n// Transformations\n.scale(@ratio) {\n -webkit-transform: scale(@ratio);\n -ms-transform: scale(@ratio); // IE9 only\n -o-transform: scale(@ratio);\n transform: scale(@ratio);\n}\n.scale(@ratioX; @ratioY) {\n -webkit-transform: scale(@ratioX, @ratioY);\n -ms-transform: scale(@ratioX, @ratioY); // IE9 only\n -o-transform: scale(@ratioX, @ratioY);\n transform: scale(@ratioX, @ratioY);\n}\n.scaleX(@ratio) {\n -webkit-transform: scaleX(@ratio);\n -ms-transform: scaleX(@ratio); // IE9 only\n -o-transform: scaleX(@ratio);\n transform: scaleX(@ratio);\n}\n.scaleY(@ratio) {\n -webkit-transform: scaleY(@ratio);\n -ms-transform: scaleY(@ratio); // IE9 only\n -o-transform: scaleY(@ratio);\n transform: scaleY(@ratio);\n}\n.skew(@x; @y) {\n -webkit-transform: skewX(@x) skewY(@y);\n -ms-transform: skewX(@x) skewY(@y); // See https://github.com/twbs/bootstrap/issues/4885; IE9+\n -o-transform: skewX(@x) skewY(@y);\n transform: skewX(@x) skewY(@y);\n}\n.translate(@x; @y) {\n -webkit-transform: translate(@x, @y);\n -ms-transform: translate(@x, @y); // IE9 only\n -o-transform: translate(@x, @y);\n transform: translate(@x, @y);\n}\n.translate3d(@x; @y; @z) {\n -webkit-transform: translate3d(@x, @y, @z);\n transform: translate3d(@x, @y, @z);\n}\n.rotate(@degrees) {\n -webkit-transform: rotate(@degrees);\n -ms-transform: rotate(@degrees); // IE9 only\n -o-transform: rotate(@degrees);\n transform: rotate(@degrees);\n}\n.rotateX(@degrees) {\n -webkit-transform: rotateX(@degrees);\n -ms-transform: rotateX(@degrees); // IE9 only\n -o-transform: rotateX(@degrees);\n transform: rotateX(@degrees);\n}\n.rotateY(@degrees) {\n -webkit-transform: rotateY(@degrees);\n -ms-transform: rotateY(@degrees); // IE9 only\n -o-transform: rotateY(@degrees);\n transform: rotateY(@degrees);\n}\n.perspective(@perspective) {\n -webkit-perspective: @perspective;\n -moz-perspective: @perspective;\n perspective: @perspective;\n}\n.perspective-origin(@perspective) {\n -webkit-perspective-origin: @perspective;\n -moz-perspective-origin: @perspective;\n perspective-origin: @perspective;\n}\n.transform-origin(@origin) {\n -webkit-transform-origin: @origin;\n -moz-transform-origin: @origin;\n -ms-transform-origin: @origin; // IE9 only\n transform-origin: @origin;\n}\n\n\n// Transitions\n\n.transition(@transition) {\n -webkit-transition: @transition;\n -o-transition: @transition;\n transition: @transition;\n}\n.transition-property(@transition-property) {\n -webkit-transition-property: @transition-property;\n transition-property: @transition-property;\n}\n.transition-delay(@transition-delay) {\n -webkit-transition-delay: @transition-delay;\n transition-delay: @transition-delay;\n}\n.transition-duration(@transition-duration) {\n -webkit-transition-duration: @transition-duration;\n transition-duration: @transition-duration;\n}\n.transition-timing-function(@timing-function) {\n -webkit-transition-timing-function: @timing-function;\n transition-timing-function: @timing-function;\n}\n.transition-transform(@transition) {\n -webkit-transition: -webkit-transform @transition;\n -moz-transition: -moz-transform @transition;\n -o-transition: -o-transform @transition;\n transition: transform @transition;\n}\n\n\n// User select\n// For selecting text on the page\n\n.user-select(@select) {\n -webkit-user-select: @select;\n -moz-user-select: @select;\n -ms-user-select: @select; // IE10+\n user-select: @select;\n}\n","// WebKit-style focus\n\n.tab-focus() {\n // Default\n outline: thin dotted;\n // WebKit\n outline: 5px auto -webkit-focus-ring-color;\n outline-offset: -2px;\n}\n","// Image Mixins\n// - Responsive image\n// - Retina image\n\n\n// Responsive image\n//\n// Keep images from scaling beyond the width of their parents.\n.img-responsive(@display: block) {\n display: @display;\n width: 100% \\9; // Force IE10 and below to size SVG images correctly\n max-width: 100%; // Part 1: Set a maximum relative to the parent\n height: auto; // Part 2: Scale the height according to the width, otherwise you get stretching\n}\n\n\n// Retina image\n//\n// Short retina mixin for setting background-image and -size. Note that the\n// spelling of `min--moz-device-pixel-ratio` is intentional.\n.img-retina(@file-1x; @file-2x; @width-1x; @height-1x) {\n background-image: url(\"@{file-1x}\");\n\n @media\n only screen and (-webkit-min-device-pixel-ratio: 2),\n only screen and ( min--moz-device-pixel-ratio: 2),\n only screen and ( -o-min-device-pixel-ratio: 2/1),\n only screen and ( min-device-pixel-ratio: 2),\n only screen and ( min-resolution: 192dpi),\n only screen and ( min-resolution: 2dppx) {\n background-image: url(\"@{file-2x}\");\n background-size: @width-1x @height-1x;\n }\n}\n","//\n// Typography\n// --------------------------------------------------\n\n\n// Headings\n// -------------------------\n\nh1, h2, h3, h4, h5, h6,\n.h1, .h2, .h3, .h4, .h5, .h6 {\n font-family: @headings-font-family;\n font-weight: @headings-font-weight;\n line-height: @headings-line-height;\n color: @headings-color;\n\n small,\n .small {\n font-weight: normal;\n line-height: 1;\n color: @headings-small-color;\n }\n}\n\nh1, .h1,\nh2, .h2,\nh3, .h3 {\n margin-top: @line-height-computed;\n margin-bottom: (@line-height-computed / 2);\n\n small,\n .small {\n font-size: 65%;\n }\n}\nh4, .h4,\nh5, .h5,\nh6, .h6 {\n margin-top: (@line-height-computed / 2);\n margin-bottom: (@line-height-computed / 2);\n\n small,\n .small {\n font-size: 75%;\n }\n}\n\nh1, .h1 { font-size: @font-size-h1; }\nh2, .h2 { font-size: @font-size-h2; }\nh3, .h3 { font-size: @font-size-h3; }\nh4, .h4 { font-size: @font-size-h4; }\nh5, .h5 { font-size: @font-size-h5; }\nh6, .h6 { font-size: @font-size-h6; }\n\n\n// Body text\n// -------------------------\n\np {\n margin: 0 0 (@line-height-computed / 2);\n}\n\n.lead {\n margin-bottom: @line-height-computed;\n font-size: floor((@font-size-base * 1.15));\n font-weight: 300;\n line-height: 1.4;\n\n @media (min-width: @screen-sm-min) {\n font-size: (@font-size-base * 1.5);\n }\n}\n\n\n// Emphasis & misc\n// -------------------------\n\n// Ex: (12px small font / 14px base font) * 100% = about 85%\nsmall,\n.small {\n font-size: floor((100% * @font-size-small / @font-size-base));\n}\n\n// Undo browser default styling\ncite {\n font-style: normal;\n}\n\nmark,\n.mark {\n background-color: @state-warning-bg;\n padding: .2em;\n}\n\n// Alignment\n.text-left { text-align: left; }\n.text-right { text-align: right; }\n.text-center { text-align: center; }\n.text-justify { text-align: justify; }\n.text-nowrap { white-space: nowrap; }\n\n// Transformation\n.text-lowercase { text-transform: lowercase; }\n.text-uppercase { text-transform: uppercase; }\n.text-capitalize { text-transform: capitalize; }\n\n// Contextual colors\n.text-muted {\n color: @text-muted;\n}\n.text-primary {\n .text-emphasis-variant(@brand-primary);\n}\n.text-success {\n .text-emphasis-variant(@state-success-text);\n}\n.text-info {\n .text-emphasis-variant(@state-info-text);\n}\n.text-warning {\n .text-emphasis-variant(@state-warning-text);\n}\n.text-danger {\n .text-emphasis-variant(@state-danger-text);\n}\n\n// Contextual backgrounds\n// For now we'll leave these alongside the text classes until v4 when we can\n// safely shift things around (per SemVer rules).\n.bg-primary {\n // Given the contrast here, this is the only class to have its color inverted\n // automatically.\n color: #fff;\n .bg-variant(@brand-primary);\n}\n.bg-success {\n .bg-variant(@state-success-bg);\n}\n.bg-info {\n .bg-variant(@state-info-bg);\n}\n.bg-warning {\n .bg-variant(@state-warning-bg);\n}\n.bg-danger {\n .bg-variant(@state-danger-bg);\n}\n\n\n// Page header\n// -------------------------\n\n.page-header {\n padding-bottom: ((@line-height-computed / 2) - 1);\n margin: (@line-height-computed * 2) 0 @line-height-computed;\n border-bottom: 1px solid @page-header-border-color;\n}\n\n\n// Lists\n// -------------------------\n\n// Unordered and Ordered lists\nul,\nol {\n margin-top: 0;\n margin-bottom: (@line-height-computed / 2);\n ul,\n ol {\n margin-bottom: 0;\n }\n}\n\n// List options\n\n// Unstyled keeps list items block level, just removes default browser padding and list-style\n.list-unstyled {\n padding-left: 0;\n list-style: none;\n}\n\n// Inline turns list items into inline-block\n.list-inline {\n .list-unstyled();\n margin-left: -5px;\n\n > li {\n display: inline-block;\n padding-left: 5px;\n padding-right: 5px;\n }\n}\n\n// Description Lists\ndl {\n margin-top: 0; // Remove browser default\n margin-bottom: @line-height-computed;\n}\ndt,\ndd {\n line-height: @line-height-base;\n}\ndt {\n font-weight: bold;\n}\ndd {\n margin-left: 0; // Undo browser default\n}\n\n// Horizontal description lists\n//\n// Defaults to being stacked without any of the below styles applied, until the\n// grid breakpoint is reached (default of ~768px).\n\n.dl-horizontal {\n dd {\n &:extend(.clearfix all); // Clear the floated `dt` if an empty `dd` is present\n }\n\n @media (min-width: @grid-float-breakpoint) {\n dt {\n float: left;\n width: (@dl-horizontal-offset - 20);\n clear: left;\n text-align: right;\n .text-overflow();\n }\n dd {\n margin-left: @dl-horizontal-offset;\n }\n }\n}\n\n\n// Misc\n// -------------------------\n\n// Abbreviations and acronyms\nabbr[title],\n// Add data-* attribute to help out our tooltip plugin, per https://github.com/twbs/bootstrap/issues/5257\nabbr[data-original-title] {\n cursor: help;\n border-bottom: 1px dotted @abbr-border-color;\n}\n.initialism {\n font-size: 90%;\n text-transform: uppercase;\n}\n\n// Blockquotes\nblockquote {\n padding: (@line-height-computed / 2) @line-height-computed;\n margin: 0 0 @line-height-computed;\n font-size: @blockquote-font-size;\n border-left: 5px solid @blockquote-border-color;\n\n p,\n ul,\n ol {\n &:last-child {\n margin-bottom: 0;\n }\n }\n\n // Note: Deprecated small and .small as of v3.1.0\n // Context: https://github.com/twbs/bootstrap/issues/11660\n footer,\n small,\n .small {\n display: block;\n font-size: 80%; // back to default font-size\n line-height: @line-height-base;\n color: @blockquote-small-color;\n\n &:before {\n content: '\\2014 \\00A0'; // em dash, nbsp\n }\n }\n}\n\n// Opposite alignment of blockquote\n//\n// Heads up: `blockquote.pull-right` has been deprecated as of v3.1.0.\n.blockquote-reverse,\nblockquote.pull-right {\n padding-right: 15px;\n padding-left: 0;\n border-right: 5px solid @blockquote-border-color;\n border-left: 0;\n text-align: right;\n\n // Account for citation\n footer,\n small,\n .small {\n &:before { content: ''; }\n &:after {\n content: '\\00A0 \\2014'; // nbsp, em dash\n }\n }\n}\n\n// Quotes\nblockquote:before,\nblockquote:after {\n content: \"\";\n}\n\n// Addresses\naddress {\n margin-bottom: @line-height-computed;\n font-style: normal;\n line-height: @line-height-base;\n}\n","// Typography\n\n.text-emphasis-variant(@color) {\n color: @color;\n a&:hover {\n color: darken(@color, 10%);\n }\n}\n","// Contextual backgrounds\n\n.bg-variant(@color) {\n background-color: @color;\n a&:hover {\n background-color: darken(@color, 10%);\n }\n}\n","// Text overflow\n// Requires inline-block or block for proper styling\n\n.text-overflow() {\n overflow: hidden;\n text-overflow: ellipsis;\n white-space: nowrap;\n}\n","//\n// Code (inline and block)\n// --------------------------------------------------\n\n\n// Inline and block code styles\ncode,\nkbd,\npre,\nsamp {\n font-family: @font-family-monospace;\n}\n\n// Inline code\ncode {\n padding: 2px 4px;\n font-size: 90%;\n color: @code-color;\n background-color: @code-bg;\n border-radius: @border-radius-base;\n}\n\n// User input typically entered via keyboard\nkbd {\n padding: 2px 4px;\n font-size: 90%;\n color: @kbd-color;\n background-color: @kbd-bg;\n border-radius: @border-radius-small;\n box-shadow: inset 0 -1px 0 rgba(0,0,0,.25);\n\n kbd {\n padding: 0;\n font-size: 100%;\n box-shadow: none;\n }\n}\n\n// Blocks of code\npre {\n display: block;\n padding: ((@line-height-computed - 1) / 2);\n margin: 0 0 (@line-height-computed / 2);\n font-size: (@font-size-base - 1); // 14px to 13px\n line-height: @line-height-base;\n word-break: break-all;\n word-wrap: break-word;\n color: @pre-color;\n background-color: @pre-bg;\n border: 1px solid @pre-border-color;\n border-radius: @border-radius-base;\n\n // Account for some code outputs that place code tags in pre tags\n code {\n padding: 0;\n font-size: inherit;\n color: inherit;\n white-space: pre-wrap;\n background-color: transparent;\n border-radius: 0;\n }\n}\n\n// Enable scrollable blocks of code\n.pre-scrollable {\n max-height: @pre-scrollable-max-height;\n overflow-y: scroll;\n}\n","//\n// Grid system\n// --------------------------------------------------\n\n\n// Container widths\n//\n// Set the container width, and override it for fixed navbars in media queries.\n\n.container {\n .container-fixed();\n\n @media (min-width: @screen-sm-min) {\n width: @container-sm;\n }\n @media (min-width: @screen-md-min) {\n width: @container-md;\n }\n @media (min-width: @screen-lg-min) {\n width: @container-lg;\n }\n}\n\n\n// Fluid container\n//\n// Utilizes the mixin meant for fixed width containers, but without any defined\n// width for fluid, full width layouts.\n\n.container-fluid {\n .container-fixed();\n}\n\n\n// Row\n//\n// Rows contain and clear the floats of your columns.\n\n.row {\n .make-row();\n}\n\n\n// Columns\n//\n// Common styles for small and large grid columns\n\n.make-grid-columns();\n\n\n// Extra small grid\n//\n// Columns, offsets, pushes, and pulls for extra small devices like\n// smartphones.\n\n.make-grid(xs);\n\n\n// Small grid\n//\n// Columns, offsets, pushes, and pulls for the small device range, from phones\n// to tablets.\n\n@media (min-width: @screen-sm-min) {\n .make-grid(sm);\n}\n\n\n// Medium grid\n//\n// Columns, offsets, pushes, and pulls for the desktop device range.\n\n@media (min-width: @screen-md-min) {\n .make-grid(md);\n}\n\n\n// Large grid\n//\n// Columns, offsets, pushes, and pulls for the large desktop device range.\n\n@media (min-width: @screen-lg-min) {\n .make-grid(lg);\n}\n","// Grid system\n//\n// Generate semantic grid columns with these mixins.\n\n// Centered container element\n.container-fixed(@gutter: @grid-gutter-width) {\n margin-right: auto;\n margin-left: auto;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n &:extend(.clearfix all);\n}\n\n// Creates a wrapper for a series of columns\n.make-row(@gutter: @grid-gutter-width) {\n margin-left: (@gutter / -2);\n margin-right: (@gutter / -2);\n &:extend(.clearfix all);\n}\n\n// Generate the extra small columns\n.make-xs-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n float: left;\n width: percentage((@columns / @grid-columns));\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n}\n.make-xs-column-offset(@columns) {\n margin-left: percentage((@columns / @grid-columns));\n}\n.make-xs-column-push(@columns) {\n left: percentage((@columns / @grid-columns));\n}\n.make-xs-column-pull(@columns) {\n right: percentage((@columns / @grid-columns));\n}\n\n// Generate the small columns\n.make-sm-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-sm-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-offset(@columns) {\n @media (min-width: @screen-sm-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-push(@columns) {\n @media (min-width: @screen-sm-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-pull(@columns) {\n @media (min-width: @screen-sm-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n\n// Generate the medium columns\n.make-md-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-md-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-offset(@columns) {\n @media (min-width: @screen-md-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-push(@columns) {\n @media (min-width: @screen-md-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-pull(@columns) {\n @media (min-width: @screen-md-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n\n// Generate the large columns\n.make-lg-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-lg-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-offset(@columns) {\n @media (min-width: @screen-lg-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-push(@columns) {\n @media (min-width: @screen-lg-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-pull(@columns) {\n @media (min-width: @screen-lg-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n","// Framework grid generation\n//\n// Used only by Bootstrap to generate the correct number of grid classes given\n// any value of `@grid-columns`.\n\n.make-grid-columns() {\n // Common styles for all sizes of grid columns, widths 1-12\n .col(@index) when (@index = 1) { // initial\n @item: ~\".col-xs-@{index}, .col-sm-@{index}, .col-md-@{index}, .col-lg-@{index}\";\n .col((@index + 1), @item);\n }\n .col(@index, @list) when (@index =< @grid-columns) { // general; \"=<\" isn't a typo\n @item: ~\".col-xs-@{index}, .col-sm-@{index}, .col-md-@{index}, .col-lg-@{index}\";\n .col((@index + 1), ~\"@{list}, @{item}\");\n }\n .col(@index, @list) when (@index > @grid-columns) { // terminal\n @{list} {\n position: relative;\n // Prevent columns from collapsing when empty\n min-height: 1px;\n // Inner gutter via padding\n padding-left: (@grid-gutter-width / 2);\n padding-right: (@grid-gutter-width / 2);\n }\n }\n .col(1); // kickstart it\n}\n\n.float-grid-columns(@class) {\n .col(@index) when (@index = 1) { // initial\n @item: ~\".col-@{class}-@{index}\";\n .col((@index + 1), @item);\n }\n .col(@index, @list) when (@index =< @grid-columns) { // general\n @item: ~\".col-@{class}-@{index}\";\n .col((@index + 1), ~\"@{list}, @{item}\");\n }\n .col(@index, @list) when (@index > @grid-columns) { // terminal\n @{list} {\n float: left;\n }\n }\n .col(1); // kickstart it\n}\n\n.calc-grid-column(@index, @class, @type) when (@type = width) and (@index > 0) {\n .col-@{class}-@{index} {\n width: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = push) and (@index > 0) {\n .col-@{class}-push-@{index} {\n left: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = push) and (@index = 0) {\n .col-@{class}-push-0 {\n left: auto;\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = pull) and (@index > 0) {\n .col-@{class}-pull-@{index} {\n right: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = pull) and (@index = 0) {\n .col-@{class}-pull-0 {\n right: auto;\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = offset) {\n .col-@{class}-offset-@{index} {\n margin-left: percentage((@index / @grid-columns));\n }\n}\n\n// Basic looping in LESS\n.loop-grid-columns(@index, @class, @type) when (@index >= 0) {\n .calc-grid-column(@index, @class, @type);\n // next iteration\n .loop-grid-columns((@index - 1), @class, @type);\n}\n\n// Create grid for specific class\n.make-grid(@class) {\n .float-grid-columns(@class);\n .loop-grid-columns(@grid-columns, @class, width);\n .loop-grid-columns(@grid-columns, @class, pull);\n .loop-grid-columns(@grid-columns, @class, push);\n .loop-grid-columns(@grid-columns, @class, offset);\n}\n","//\n// Tables\n// --------------------------------------------------\n\n\ntable {\n background-color: @table-bg;\n}\nth {\n text-align: left;\n}\n\n\n// Baseline styles\n\n.table {\n width: 100%;\n max-width: 100%;\n margin-bottom: @line-height-computed;\n // Cells\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n padding: @table-cell-padding;\n line-height: @line-height-base;\n vertical-align: top;\n border-top: 1px solid @table-border-color;\n }\n }\n }\n // Bottom align for column headings\n > thead > tr > th {\n vertical-align: bottom;\n border-bottom: 2px solid @table-border-color;\n }\n // Remove top border from thead by default\n > caption + thead,\n > colgroup + thead,\n > thead:first-child {\n > tr:first-child {\n > th,\n > td {\n border-top: 0;\n }\n }\n }\n // Account for multiple tbody instances\n > tbody + tbody {\n border-top: 2px solid @table-border-color;\n }\n\n // Nesting\n .table {\n background-color: @body-bg;\n }\n}\n\n\n// Condensed table w/ half padding\n\n.table-condensed {\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n padding: @table-condensed-cell-padding;\n }\n }\n }\n}\n\n\n// Bordered version\n//\n// Add borders all around the table and between all the columns.\n\n.table-bordered {\n border: 1px solid @table-border-color;\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n border: 1px solid @table-border-color;\n }\n }\n }\n > thead > tr {\n > th,\n > td {\n border-bottom-width: 2px;\n }\n }\n}\n\n\n// Zebra-striping\n//\n// Default zebra-stripe styles (alternating gray and transparent backgrounds)\n\n.table-striped {\n > tbody > tr:nth-child(odd) {\n > td,\n > th {\n background-color: @table-bg-accent;\n }\n }\n}\n\n\n// Hover effect\n//\n// Placed here since it has to come after the potential zebra striping\n\n.table-hover {\n > tbody > tr:hover {\n > td,\n > th {\n background-color: @table-bg-hover;\n }\n }\n}\n\n\n// Table cell sizing\n//\n// Reset default table behavior\n\ntable col[class*=\"col-\"] {\n position: static; // Prevent border hiding in Firefox and IE9/10 (see https://github.com/twbs/bootstrap/issues/11623)\n float: none;\n display: table-column;\n}\ntable {\n td,\n th {\n &[class*=\"col-\"] {\n position: static; // Prevent border hiding in Firefox and IE9/10 (see https://github.com/twbs/bootstrap/issues/11623)\n float: none;\n display: table-cell;\n }\n }\n}\n\n\n// Table backgrounds\n//\n// Exact selectors below required to override `.table-striped` and prevent\n// inheritance to nested tables.\n\n// Generate the contextual variants\n.table-row-variant(active; @table-bg-active);\n.table-row-variant(success; @state-success-bg);\n.table-row-variant(info; @state-info-bg);\n.table-row-variant(warning; @state-warning-bg);\n.table-row-variant(danger; @state-danger-bg);\n\n\n// Responsive tables\n//\n// Wrap your tables in `.table-responsive` and we'll make them mobile friendly\n// by enabling horizontal scrolling. Only applies <768px. Everything above that\n// will display normally.\n\n.table-responsive {\n @media screen and (max-width: @screen-xs-max) {\n width: 100%;\n margin-bottom: (@line-height-computed * 0.75);\n overflow-y: hidden;\n overflow-x: auto;\n -ms-overflow-style: -ms-autohiding-scrollbar;\n border: 1px solid @table-border-color;\n -webkit-overflow-scrolling: touch;\n\n // Tighten up spacing\n > .table {\n margin-bottom: 0;\n\n // Ensure the content doesn't wrap\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n white-space: nowrap;\n }\n }\n }\n }\n\n // Special overrides for the bordered tables\n > .table-bordered {\n border: 0;\n\n // Nuke the appropriate borders so that the parent can handle them\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th:first-child,\n > td:first-child {\n border-left: 0;\n }\n > th:last-child,\n > td:last-child {\n border-right: 0;\n }\n }\n }\n\n // Only nuke the last row's bottom-border in `tbody` and `tfoot` since\n // chances are there will be only one `tr` in a `thead` and that would\n // remove the border altogether.\n > tbody,\n > tfoot {\n > tr:last-child {\n > th,\n > td {\n border-bottom: 0;\n }\n }\n }\n\n }\n }\n}\n","// Tables\n\n.table-row-variant(@state; @background) {\n // Exact selectors below required to override `.table-striped` and prevent\n // inheritance to nested tables.\n .table > thead > tr,\n .table > tbody > tr,\n .table > tfoot > tr {\n > td.@{state},\n > th.@{state},\n &.@{state} > td,\n &.@{state} > th {\n background-color: @background;\n }\n }\n\n // Hover states for `.table-hover`\n // Note: this is not available for cells or rows within `thead` or `tfoot`.\n .table-hover > tbody > tr {\n > td.@{state}:hover,\n > th.@{state}:hover,\n &.@{state}:hover > td,\n &:hover > .@{state},\n &.@{state}:hover > th {\n background-color: darken(@background, 5%);\n }\n }\n}\n","//\n// Forms\n// --------------------------------------------------\n\n\n// Normalize non-controls\n//\n// Restyle and baseline non-control form elements.\n\nfieldset {\n padding: 0;\n margin: 0;\n border: 0;\n // Chrome and Firefox set a `min-width: min-content;` on fieldsets,\n // so we reset that to ensure it behaves more like a standard block element.\n // See https://github.com/twbs/bootstrap/issues/12359.\n min-width: 0;\n}\n\nlegend {\n display: block;\n width: 100%;\n padding: 0;\n margin-bottom: @line-height-computed;\n font-size: (@font-size-base * 1.5);\n line-height: inherit;\n color: @legend-color;\n border: 0;\n border-bottom: 1px solid @legend-border-color;\n}\n\nlabel {\n display: inline-block;\n max-width: 100%; // Force IE8 to wrap long content (see https://github.com/twbs/bootstrap/issues/13141)\n margin-bottom: 5px;\n font-weight: bold;\n}\n\n\n// Normalize form controls\n//\n// While most of our form styles require extra classes, some basic normalization\n// is required to ensure optimum display with or without those classes to better\n// address browser inconsistencies.\n\n// Override content-box in Normalize (* isn't specific enough)\ninput[type=\"search\"] {\n .box-sizing(border-box);\n}\n\n// Position radios and checkboxes better\ninput[type=\"radio\"],\ninput[type=\"checkbox\"] {\n margin: 4px 0 0;\n margin-top: 1px \\9; // IE8-9\n line-height: normal;\n}\n\n// Set the height of file controls to match text inputs\ninput[type=\"file\"] {\n display: block;\n}\n\n// Make range inputs behave like textual form controls\ninput[type=\"range\"] {\n display: block;\n width: 100%;\n}\n\n// Make multiple select elements height not fixed\nselect[multiple],\nselect[size] {\n height: auto;\n}\n\n// Focus for file, radio, and checkbox\ninput[type=\"file\"]:focus,\ninput[type=\"radio\"]:focus,\ninput[type=\"checkbox\"]:focus {\n .tab-focus();\n}\n\n// Adjust output element\noutput {\n display: block;\n padding-top: (@padding-base-vertical + 1);\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @input-color;\n}\n\n\n// Common form controls\n//\n// Shared size and type resets for form controls. Apply `.form-control` to any\n// of the following form controls:\n//\n// select\n// textarea\n// input[type=\"text\"]\n// input[type=\"password\"]\n// input[type=\"datetime\"]\n// input[type=\"datetime-local\"]\n// input[type=\"date\"]\n// input[type=\"month\"]\n// input[type=\"time\"]\n// input[type=\"week\"]\n// input[type=\"number\"]\n// input[type=\"email\"]\n// input[type=\"url\"]\n// input[type=\"search\"]\n// input[type=\"tel\"]\n// input[type=\"color\"]\n\n.form-control {\n display: block;\n width: 100%;\n height: @input-height-base; // Make inputs at least the height of their button counterpart (base line-height + padding + border)\n padding: @padding-base-vertical @padding-base-horizontal;\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @input-color;\n background-color: @input-bg;\n background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214\n border: 1px solid @input-border;\n border-radius: @input-border-radius;\n .box-shadow(inset 0 1px 1px rgba(0,0,0,.075));\n .transition(~\"border-color ease-in-out .15s, box-shadow ease-in-out .15s\");\n\n // Customize the `:focus` state to imitate native WebKit styles.\n .form-control-focus();\n\n // Placeholder\n .placeholder();\n\n // Disabled and read-only inputs\n //\n // HTML5 says that controls under a fieldset > legend:first-child won't be\n // disabled if the fieldset is disabled. Due to implementation difficulty, we\n // don't honor that edge case; we style them as disabled anyway.\n &[disabled],\n &[readonly],\n fieldset[disabled] & {\n cursor: not-allowed;\n background-color: @input-bg-disabled;\n opacity: 1; // iOS fix for unreadable disabled content\n }\n\n // Reset height for `textarea`s\n textarea& {\n height: auto;\n }\n}\n\n\n// Search inputs in iOS\n//\n// This overrides the extra rounded corners on search inputs in iOS so that our\n// `.form-control` class can properly style them. Note that this cannot simply\n// be added to `.form-control` as it's not specific enough. For details, see\n// https://github.com/twbs/bootstrap/issues/11586.\n\ninput[type=\"search\"] {\n -webkit-appearance: none;\n}\n\n\n// Special styles for iOS temporal inputs\n//\n// In Mobile Safari, setting `display: block` on temporal inputs causes the\n// text within the input to become vertically misaligned.\n// As a workaround, we set a pixel line-height that matches the\n// given height of the input. Since this fucks up everything else, we have to\n// appropriately reset it for Internet Explorer and the size variations.\n\ninput[type=\"date\"],\ninput[type=\"time\"],\ninput[type=\"datetime-local\"],\ninput[type=\"month\"] {\n line-height: @input-height-base;\n // IE8+ misaligns the text within date inputs, so we reset\n line-height: @line-height-base ~\"\\0\";\n\n &.input-sm {\n line-height: @input-height-small;\n }\n &.input-lg {\n line-height: @input-height-large;\n }\n}\n\n\n// Form groups\n//\n// Designed to help with the organization and spacing of vertical forms. For\n// horizontal forms, use the predefined grid classes.\n\n.form-group {\n margin-bottom: 15px;\n}\n\n\n// Checkboxes and radios\n//\n// Indent the labels to position radios/checkboxes as hanging controls.\n\n.radio,\n.checkbox {\n position: relative;\n display: block;\n min-height: @line-height-computed; // clear the floating input if there is no label text\n margin-top: 10px;\n margin-bottom: 10px;\n\n label {\n padding-left: 20px;\n margin-bottom: 0;\n font-weight: normal;\n cursor: pointer;\n }\n}\n.radio input[type=\"radio\"],\n.radio-inline input[type=\"radio\"],\n.checkbox input[type=\"checkbox\"],\n.checkbox-inline input[type=\"checkbox\"] {\n position: absolute;\n margin-left: -20px;\n margin-top: 4px \\9;\n}\n\n.radio + .radio,\n.checkbox + .checkbox {\n margin-top: -5px; // Move up sibling radios or checkboxes for tighter spacing\n}\n\n// Radios and checkboxes on same line\n.radio-inline,\n.checkbox-inline {\n display: inline-block;\n padding-left: 20px;\n margin-bottom: 0;\n vertical-align: middle;\n font-weight: normal;\n cursor: pointer;\n}\n.radio-inline + .radio-inline,\n.checkbox-inline + .checkbox-inline {\n margin-top: 0;\n margin-left: 10px; // space out consecutive inline controls\n}\n\n// Apply same disabled cursor tweak as for inputs\n// Some special care is needed because